Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Ion mobility index	Ion mobility length	1/K0	1/K0 length	Calibrated 1/K0	CCS	Calibrated CCS	CCS length	Match time difference	Match m/z difference	Match K0 difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAADHAA	8	Unmodified	_AAAADHAA_					0	0	0		ENST00000370071.6_1_1:108023260-108023536:+|nuORF	ENST00000370071.6_1_1:108023260-108023536:+|nuORF	ENST00000370071.6_1_1:108023260-108023536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3263787740999	1	697.326379	696.319102	0.81891	0.00057105	-9.2646	-0.0064605	-8.4457	-0.0058894	697.3200568767057	42.962	0.16802	42.962	42.914	43.082	0	702	58	1.2008407	0.034308076	1.2008407	245.24974	0	7.0068054						132	8	2	NaN	NaN	NaN	0.84692	1	3162	3162		1.4396	0	1	10380			0	6648	0	0	0	0					-0.04120447956154294
AAAAGHFL	8	Unmodified	_AAAAGHFL_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139749436-139750950:+|nuORF;ENST00000263857.10_1_2:86332834-86332951:-|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.3991497866999	1	757.39915	756.391873	0.76144	0.00057671	-3.9532	-0.0029942	-3.1918	-0.0024174	757.3957963145536	35.072	0.12069	35.072	35.048	35.168	0	549	58	1.292695	0.034128904	1.292695	263.6046	0	6.9595337						171	6	3	NaN	NaN	NaN	0.81214	1	4174	4174		7.5902	1.4999	1	16080			1	5094	1	1	1	1					0.003933058372695086
AAAALEIEL	9	Unmodified	_AAAALEIEL_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744376999	1	900.503674	899.496398	1.3545	0.0012197	-0.91869	-0.00082728	0.4358	0.00039244	900.5028281825516	28.773	0.12063	28.765	28.74	28.861	-0.0083504	360	64	1.405474	0.037472963	1.4039545	285.7889	0	7.619751						180	6	3	NaN	NaN	NaN	0.030391	1	5944	5944		58.599	8.7663	1	27742			2	1043	2	2	2	2					0.0426296280331826
AAAAPNPG	8	Unmodified	_AAAAPNPG_					0	0	0		ENST00000312006.4_1_11:65812951-65816641:-|nuORF;ENSG00000133069|ENST00000358024|TMCC2	ENST00000312006.4_1_11:65812951-65816641:-|nuORF	ENST00000312006.4_1_11:65812951-65816641:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3362151789	1	668.336215	667.328939	1.8577	0.0012416	5.4059	0.0036129	7.2636	0.0048545	668.3399270607717	22.887	0.14471	22.887	22.838	22.983	0	717	58	1.1918083	0.034333944	1.1918083	243.60878	0	7.017929						153	7	2	NaN	NaN	NaN	0.84651	1	2536	2536		1.6704	0	1	14324			3	2809	3	3	3	3					-0.01803259950759184
AAAELEPAL	9	Unmodified	_AAAELEPAL_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000168807|Q13425-2|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.4723743092999	1	884.472374	883.465098	2.1075	0.001864	-0.45017	-0.00039816	1.6573	0.0014659	884.471986837486	23.562	0.19278	23.562	23.513	23.706	0	438	91	1.359022	0.05363846	1.359022	276.41895	0	10.90979						316	9	3	NaN	NaN	NaN	0.056143	1	5845	5845		44.302	2.5178	1	48624			4	4639	4	4	4	4					0.018703897692262217
AAAELEPAL	9	Unmodified	_AAAELEPAL_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000168807|Q13425-2|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.4723743092999	1	884.472374	883.465098	1.9806	0.0017518	-0.88891	-0.00078622	1.0917	0.0009656	884.4716644706488	23.585	0.14464	23.572	23.524	23.669	-0.013048	435	88	1.360811	0.051847696	1.3592916	276.7828	0	10.545563						231	7	2	NaN	NaN	NaN	0.023074	1	5724	5724		68.108	18.275	1	46326			5	4639	4	4	5	5					0.018703897692262217
AAAETQSL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAETQSL_					1	0	0		ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4046886746	1	832.404689	831.397412	1.9452	0.0016192	-0.75835	-0.00063125	1.1868	0.00098793	832.4044018682274	22.549	0.16882	22.549	22.501	22.67	0	450	61	1.3518641	0.035800934	1.3518641	275.22693	0	7.288727						246	8	3	NaN	NaN	NaN	0.023741	1	5151	5151		93.472	26.317	1	29037			6	1885	5	5	6	6					-0.02503060161564008
AAAGKGSK	8	Unmodified	_AAAGKGSK_					0	0	0			REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1	REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3940644088	1	689.394064	688.386788	1.7355	0.0011964	-4.7706	-0.0032888	-3.0351	-0.0020924	689.3911724994458	28.701	0.1448	28.701	28.677	28.822	0	633	73	1.2423272	0.04325092	1.2423272	253.77895	0	8.835175						180	7	3	NaN	NaN	NaN	0.84876	1	2998	2998		0.39566	0	1	26313	+		7	8703	6	6	7	7					0.03013001974659346
AAAGKPPAP	9	Unmodified	_AAAGKPPAP_					0	0	0			REV__ENSG00000185155|ENST00000366810|MIXL1	REV__ENSG00000185155|ENST00000366810|MIXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	779.4410146014	1	779.441015	778.433738	1.9791	0.0015426	-4.1132	-0.003206	-2.134	-0.0016633	779.4378912729999	52.427	0.095863	52.427	52.403	52.499	0	552	37	1.2908988	0.021556258	1.2908988	263.10553	0	4.3934937						66	5	2	NaN	NaN	NaN	0.67989	1	4473	4473		0.92586	0.5302	1	3447.6	+		8	10950	7	7	8	8					0.03565861525794389
AAALTGFV	8	Unmodified	_AAALTGFV_					0	0	0		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4192165268	1	749.419217	748.41194	1.2877	0.000965	-0.36568	-0.00027405	0.92199	0.00069095	749.4191232083904	29.401	0.16899	29.401	29.353	29.522	0	540	52	1.2980826	0.030529857	1.2980826	264.75348	0	6.2268066						172	8	3	NaN	NaN	NaN	0.75682	1	4032	4032		15.013	8.2189	1	16762			9	5563	8	8	9	9					0.02767056777236121
AAALTGFV	8	Unmodified	_AAALTGFV_					0	0	0		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.4192165268	1	749.419217	748.41194	1.3186	0.00098816	0.27461	0.0002058	1.5932	0.001194	749.4190496818978	29.4	0.16891	29.393	29.344	29.513	-0.0077209	537	58	1.2998781	0.034121633	1.2983587	265.1197	0	6.9593506						141	8	2	NaN	NaN	NaN	0.66957	1	3955	3955		20.952	9.8618	1	14850			10	5563	8	8	10	10					0.02767056777236121
AAANAKVP	8	Unmodified	_AAANAKVP_					0	0	0			REV__nc|ENSG00000099889|O00192-2|ARVCF	REV__nc|ENSG00000099889|O00192-2|ARVCF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4253645372	1	741.425365	740.418088	1.3395	0.00099313	-3.1433	-0.0023305	-1.8038	-0.0013374	741.4230181864473	36.446	0.14476	36.446	36.398	36.543	0	621	91	1.2495319	0.054063678	1.2495319	254.90071	0	11.028809						226	7	3	NaN	NaN	NaN	0.84727	1	3920	3920		1.2418	0.84618	1	31828	+		11	8777	9	9	11	11					0.03749575008748707
AAAPCDPLL	9	Unmodified	_AAAPCDPLL_					0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4389656909001	1	870.438966	869.431689	1.3063	0.001137	6.4635	0.0056261	7.7698	0.0067631	870.4444580614821	24.309	0.19301	24.309	24.237	24.43	0	444	88	1.3554435	0.051913977	1.3554435	275.75925	0	10.561676						176	9	2	NaN	NaN	NaN	0.47587	1	5653	5653		10.605	0.85897	1	22581	+		12	8532	10	10	12	12					-0.008249352743064264
AAAPGPAQG	9	Unmodified	_AAAPGPAQG_					0	0	0			REV__ENSG00000087095|ENST00000407008|NLK	REV__ENSG00000087095|ENST00000407008|NLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.3733289667001	1	739.373329	738.366053	1.6465	0.0012174	-1.7733	-0.0013111	-0.1268	-9.3753E-05	739.3727282444717	28.194	0.12065	28.194	28.17	28.291	0	561	100	1.2855089	0.0593462	1.2855089	262.25314	0	12.107056						168	6	2	NaN	NaN	NaN	0.61413	1	3891	3891		4.9097	0.85605	1	18671	+		13	8692	11	11	13	13					-0.013595884050005225
AAAPGPAQG	9	Unmodified						0	0	0			REV__ENSG00000087095|ENST00000407008|NLK	REV__ENSG00000087095|ENST00000407008|NLK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.373329	738.366053	1.6465	0.0012174	-1.7733	-0.0013111	-0.1268	-9.3753E-05	739.3727282444717	28.194	0.12065	28.194	28.17	28.291	0	561	100	1.2855089	0.0593462	1.2855089	262.25314		12.107056	-0.0072266	-1.1261E-05	0.00075972	NaN	4.9097	168	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18671	+		14	8692	11	11							-0.013595884050005225
AAAQAAHAD	9	Unmodified	_AAAQAAHAD_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	825.3849562854999	1	825.384956	824.37768	1.8538	0.0015301	0.33649	0.00027773	2.1903	0.0018078	825.3843578700915	20.213	0.12017	20.213	20.165	20.285	0	516	46	1.3124412	0.02690649	1.3124412	267.2378	0	5.478668						112	6	2	NaN	NaN	NaN	0.36492	1	5086	5086		15.175	6.0522	1	8294.7			15	5871	12	12	14	14					-0.04153391381680649
AAASGRAS	8	Unmodified	_AAASGRAS_					0	0	0		PLXNA3|p.Y104Mfs*78|1|0.56|ENSG00000130827|chrX:154460492-154460492|C/-|frameshift_variant	PLXNA3|p.Y104Mfs*78|1|0.56|ENSG00000130827|chrX:154460492-154460492|C/-|frameshift_variant	PLXNA3|p.Y104Mfs*78|1|0.56|ENSG00000130827|chrX:154460492-154460492|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3529278756	1	690.352928	689.345651	2.2664	0.0015646	-6.3196	-0.0043627	-4.0532	-0.0027981	690.3484635868244	25.491	0.096516	25.479	25.455	25.551	-0.012011	660	40	1.2261056	0.02343893	1.2245861	250.45845	0	4.7878876						75	5	2	NaN	NaN	NaN	0.84512	1	2930	2930		2.4615	0	1	4558.1			16	8099	13	13	15	15					-0.011447590648117512
AAASPPGL	8	Unmodified	_AAASPPGL_					0	0	0		nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L	nc|ENSG00000144445|A0AUZ9-2|KANSL1L	nc|ENSG00000144445|A0AUZ9-2|KANSL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3722663342002	1	683.372266	682.36499	2.3474	0.0016042	2.5784	0.001762	4.9258	0.0033662	683.3744906786857	34.492	0.02412	34.491	34.491	34.515	-0.0006485	675	52	1.2170867	0.030676961	1.2155672	248.66563	0	6.267685						40	2	2	NaN	NaN	NaN	0.84887	1	2802	2802		0.32989	0	1	2421.8			17	3475	14	14	16	16					0.011101972261030824
AAASTATL	8	Unmodified	_AAASTATL_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3777456426002	1	705.377746	704.370469	-0.73156	-0.00051603	7.2383	0.0051057	6.5067	0.0045897	705.3832203994436	55.963	0.072075	55.962	55.938	56.01	-0.00059128	669	79	1.2206948	0.046885252	1.2191753	249.24954	0	9.573334						117	4	3	NaN	NaN	NaN	0.84887	1	3232	3232		0.32989	0	1	16098			18	5061	15	15	17	17					0.006458760179157252
AAASTVSH	8	Unmodified	_AAASTVSH_					0	0	0			REV__PCSK2|p.G382V|1|0.21|ENSG00000125851|chr20:17456391-17456391|G/T|missense_variant	REV__PCSK2|p.G382V|1|0.21|ENSG00000125851|chr20:17456391-17456391|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3682435888	1	743.368244	742.360967	1.6405	0.0012195	-7.8948	-0.0058687	-6.2543	-0.0046493	743.3621993900564	38.249	0.26439	38.252	38.132	38.397	0.0034256	567	79	1.2819146	0.046740174	1.2803952	261.49426	0	9.534378						265	12	2	NaN	NaN	NaN	0.82332	1	3869	3869		6.0903	2.5171	1	29903	+		19	13290	16	16	18	18					-0.0205189226761604
AAASTVSH	8	Unmodified						0	0	0			REV__PCSK2|p.G382V|1|0.21|ENSG00000125851|chr20:17456391-17456391|G/T|missense_variant	REV__PCSK2|p.G382V|1|0.21|ENSG00000125851|chr20:17456391-17456391|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	743.368244	742.360967	1.6405	0.0012195	-7.8948	-0.0058687	-6.2543	-0.0046493	743.3621993900564	38.249	0.26439	38.252	38.132	38.397	0.0034256	567	79	1.2819146	0.046740174	1.2803952	261.49426		9.534378	-0.011496	-0.00042962	0.0010378	NaN	6.0903	265	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29903	+		20	13290	16	16							-0.0205189226761604
AAATSSKT	8	Unmodified	_AAATSSKT_					0	0	0		ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53	ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENST00000588858.5_1_19:13886394-13889009:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.383559302	1	736.383559	735.376283	2.0188	0.0014866	6.9553	0.0051218	8.9741	0.0066084	736.389509441726	22.091	0.072304	22.077	22.053	22.125	-0.013731	996	46	1.0229213	0.027371764	1.0214019	208.69882	0	5.5844574						55	4	2	NaN	NaN	NaN	0.82797	1	3755	3755		5.4659	2.3125	1	3308.4			21	1507	17	17	19	19					-0.001990254704310246
AAATTITT	8	Unmodified	_AAATTITT_					0	0	0			REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4039603931	1	749.40396	748.396684	0.99047	0.00074226	4.6721	0.0035013	5.6625	0.0042435	749.4074090091831	30.825	0.12065	30.825	30.777	30.897	0	558	46	1.2873057	0.026952505	1.2873057	262.5555	0	5.497162						103	6	2	NaN	NaN	NaN	0.84455	1	4029	4029		2.7852	1.3456	1	8004.1	+		22	11326	18	18	20	20					0.01242145189371513
AAAVYRPP	8	Unmodified	_AAAVYRPP_					0	0	0		ENST00000561344.5_1_15:96826128-96833920:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF	ENST00000561344.5_1_15:96826128-96833920:-|nuORF	ENST00000561344.5_1_15:96826128-96833920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4675637029001	1	844.467564	843.460287	1.3676	0.0011549	-0.66969	-0.00056553	0.69789	0.00058935	844.4672807652793	20.862	0.07239	20.862	20.838	20.911	0	393	76	1.3858368	0.044681907	1.3858368	282.07785	0	9.094727						107	4	2	NaN	NaN	NaN	0.77489	1	5311	5311		12.588	1.9829	1	11056			23	7309	19	19	21	21					0.03229550417131577
AACQSDFADL	10	Unmodified	_AACQSDFADL_					0	0	0		LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant;ENSG00000135338|ENST00000369846|LCA5	LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7213066713	2	520.721307	1039.42806	1.2296	0.0006403	-2.8284	-0.0014728	-1.5987	-0.00083249	521.2206399957813	36.952	0.16838	36.952	36.904	37.072	0	1308	37	0.83204526	0.022148132	0.83204526	337.6845	0	8.9888						191	8	4	NaN	NaN	NaN	0.66626	1	10169	10169		10.36	0.61416	1	16486			24	7861	20	20	22	22					-0.0900764983884983
AACVLHKA	8	Unmodified	_AACVLHKA_					0	0	0		ENST00000591325.1_1_19:58790629-58791205:+|nuORF	ENST00000591325.1_1_19:58790629-58791205:+|nuORF	ENST00000591325.1_1_19:58790629-58791205:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4447197708001	1	812.44472	811.437443	1.9619	0.001594	7.2932	0.0059253	9.2551	0.0075193	812.4509643610163	46.174	0.31165	46.174	46.078	46.39	0	309	58	1.435777	0.03383565	1.435777	292.42764	0	6.8913574						305	14	3	NaN	NaN	NaN	0.84887	1	4911	4911		0.32989	0	1	29390			25	7731	21	21	23	23					0.024182080280183982
AADAAHEF	8	Unmodified	_AADAAHEF_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.3631582109	1	831.363158	830.355882	1.8396	0.0015294	-8.206	-0.0068222	-6.3664	-0.0052928	831.3565935084861	26.118	0.1448	26.107	26.059	26.204	-0.011137	489	79	1.3285799	0.0466156	1.3270605	270.49203	0	9.490692						188	7	2	NaN	NaN	NaN	0.77489	1	5018	5018		12.588	1.9829	1	22496			26	2484	22	22	24	24					-0.06608196130241595
AADAAHEF	8	Unmodified						0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	831.363158	830.355882	2.2696	0.0018868	-9.6115	-0.0079907	-7.3419	-0.0061038	831.3547951623937	26.119	0.2172	26.119	26.07	26.288	0	486	64	1.3303722	0.037644982	1.3303722	270.85693		7.664337	0.0056831	-0.00059206	0.0016558	NaN	12.588	242	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24036			27	2484	22	22							-0.06608196130241595
AADDTEISF	9	Unmodified	_AADDTEISF_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.4207326693002	1	968.420733	967.413456	1.5841	0.0015341	-0.10804	-0.00010462	1.4761	0.0014295	968.4205999467208	23.778	0.2169	23.765	23.717	23.934	-0.013048	294	124	1.4446791	0.07306051	1.4431597	293.44995	0	14.840393						344	10	2	NaN	NaN	NaN	0.10956	1	7388	7388		34.439	0.74048	1	65843			28	3010	23	23	25	25					-0.07155398715315187
AADEPVYI	8	Unmodified	_AADEPVYI_					0	0	0		nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4301751436	1	877.430175	876.422899	1.958	0.001718	-0.36303	-0.00031853	1.5949	0.0013994	877.4298235213394	23.248	0.14472	23.248	23.2	23.345	0	405	79	1.3786905	0.046486616	1.3786905	280.45395	0	9.456329						151	7	2	NaN	NaN	NaN	0.40747	1	5749	5749		36.036	10.285	1	16810			29	3454	24	24	26	26					-0.020255856391486304
AADEPVYI	8	Unmodified	_AADEPVYI_					0	0	0		nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4301751436	1	877.430175	876.422899	1.5937	0.0013984	-1.3913	-0.0012208	0.20245	0.00017764	877.4287296042603	23.272	0.12063	23.258	23.21	23.331	-0.013294	402	97	1.3804773	0.05722654	1.3789579	280.81744	0	11.641052						177	6	3	NaN	NaN	NaN	0.19946	1	5621	5621		50.033	21.366	1	15414			30	3454	24	24	27	27					-0.020255856391486304
AAECHPPVGR	10	Unmodified	_AAECHPPVGR_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant;STAG2|p.G542W|1|0.15|ENSG00000101972|chrX:124061860-124061860|G/T|missense_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7532755017	2	518.753276	1035.492	1.7906	0.00092887	-4.1834	-0.0021701	-2.3928	-0.0012413	519.2518708317016	28.001	0.096502	28.001	27.953	28.05	0	1311	79	0.83019954	0.04798758	0.83019954	336.95215	0	19.476654						208	5	3	NaN	NaN	NaN	0.69717	1	10005	10005		8.2448	0	1	17697			31	1354	25	25	28	28					-0.024328248912297568
AAECHPPVGR	10	Unmodified						0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant;STAG2|p.G542W|1|0.15|ENSG00000101972|chrX:124061860-124061860|G/T|missense_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.753276	1035.492	1.0711	0.00055563	-3.547	-0.00184	-2.4759	-0.0012844	519.2534945253599	28.001	0.12065	27.992	27.919	28.04	-0.0089798	1314	67	0.8283535	0.04060924	0.8268341	336.20294		16.482025	-0.0048685	0.00044774	-0.0016827	NaN	8.2448	155	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12873			32	1354	25	25							-0.024328248912297568
AAEGAPVV	8	Unmodified	_AAEGAPVV_					0	0	0			REV__ENSG00000283632|ENST00000413988|EXOC3L2	REV__ENSG00000283632|ENST00000413988|EXOC3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.3828310205001	1	713.382831	712.375555	1.2147	0.00086652	6.4099	0.0045727	7.6246	0.0054392	713.3880709467252	27.664	0.048246	27.664	27.639	27.688	0	579	49	1.2747238	0.028772473	1.2747238	260.22577	0	5.873657						72	3	2	NaN	NaN	NaN	0.84651	1	3468	3468		1.6704	0.2308	1	5250.7	+		33	11440	26	26	29	29					0.007861798805265607
AAEGPELVSL	10	Unmodified	_AAEGPELVSL_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB;nc|ENSG00000204520|Q29983-2|MICA;nc|ENSG00000204520|Q29983|MICA	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5200527834	1	985.520053	984.512776	1.9823	0.0019536	-0.61338	-0.0006045	1.3689	0.0013491	985.5206170994448	26.287	0.16888	26.276	26.204	26.373	-0.011137	252	76	1.4695803	0.04444039	1.4680609	298.43518	0	9.024719						262	8	3	NaN	NaN	NaN	0.10581	1	7861	7861		45.165	2.8473	1	41920			34	5888	27	27	30	30					0.01990043969431099
AAEGPELVSL	10	Unmodified						0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB;nc|ENSG00000204520|Q29983-2|MICA;nc|ENSG00000204520|Q29983|MICA	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	985.520053	984.512776	2.4427	0.0024073	-0.61565	-0.00060673	1.827	0.0018006	985.5190302702274	26.288	0.12069	26.288	26.239	26.36	0	258	64	1.4660252	0.03732586	1.4660252	297.71323		7.579956	0.005678	-1.0793E-06	-0.0010178	NaN	45.165	235	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37892			35	5888	27	27							0.01990043969431099
AAEHPEGMHI	10	Unmodified	_AAEHPEGMHI_					0	0	0			REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.50280258036673	3	364.502803	1090.48658	1.6974	0.00061871	-4.8045	-0.0017512	-3.107	-0.0011325	364.50099959090903	19.444	0.21592	19.444	19.324	19.54	0	1503	43	0.711653	0.026022136	0.711653	432.96497	0	15.831726						216	10	3	NaN	NaN	NaN	0.71736	1	12407	12407		3.261	1.4108	1	25134	+		36	11736	28	28	31	31					-0.055045484736865546
AAEHPEGMHI	10	Unmodified	_AAEHPEGMHI_					0	0	0			REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2505656372501	2	546.250566	1090.48658	1.499	0.00081883	-2.621	-0.0014317	-1.122	-0.0006129	546.2481484531187	19.466	0.16846	19.452	19.404	19.573	-0.014141	1245	79	0.87076044	0.04790461	0.869241	353.18063	0	19.430115						266	8	3	NaN	NaN	NaN	0.47601	1	12102	12102		20.449	5.2733	1	38493	+		37	11736	28	28	32	32					-0.055045484736865546
AAEHPEGMHI	10	Unmodified						0	0	0			REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.250566	1090.48658	1.5986	0.00087322	0.44594	0.0002436	2.0445	0.0011168	546.7531082624372	19.444	0.144	19.444	19.42	19.564	0	1242	94	0.87260187	0.057126284	0.87260187	353.9275		23.17044	-0.004054	0.0019148	0.0016804	NaN	20.449	374	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46361	+		38	11736	28	28							-0.055045484736865546
AAEHPEGMHI	10	Unmodified						0	0	0			REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	REV__ENST00000496270.5_1_3:182983909-182987339:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.250566	1090.48658	1.499	0.00081883	-2.621	-0.0014317	-1.122	-0.0006129	546.2481484531187	19.466	0.16846	19.452	19.404	19.573	-0.014141	1245	79	0.87076044	0.04790461	0.869241	353.18063		19.430115	0.004054	-0.0014359	-0.0016804	NaN	20.449	266	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38493	+		39	11736	28	28							-0.055045484736865546
AAEPSSPAL	9	Unmodified	_AAEPSSPAL_					0	0	0		ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.4254241167001	1	842.425424	841.418148	2.2573	0.0019016	-1.496	-0.0012603	0.76134	0.00064137	842.4241119394337	18.316	0.12	18.316	18.268	18.388	0	525	49	1.3070582	0.028717041	1.3070582	266.05334	0	5.845398						82	6	2	NaN	NaN	NaN	0.062072	1	5282	5282		41.785	12.186	1	6171.1			40	7489	29	29	33	33					-0.008904697818934437
AAEPSSPAL	9	Unmodified	_AAEPSSPAL_					0	0	0		ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	ENST00000539387.5_1_4:140216240-140223649:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.4254241167001	1	842.425424	841.418148	1.9238	0.0016207	-2.0557	-0.0017318	-0.13188	-0.0001111	842.4234420496177	18.338	0.21608	18.324	18.252	18.468	-0.01395	528	46	1.3052634	0.026918054	1.303744	265.68802	0	5.4792175						112	10	2	NaN	NaN	NaN	0.025843	1	5151	5151		64.55	20.248	1	8131.1			41	7489	29	29	34	34					-0.008904697818934437
AAFLGDIAL	9	Unmodified	_AAFLGDIAL_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4981951292999	1	890.498195	889.490919	1.3689	0.001219	-0.23825	-0.00021216	1.1306	0.0010068	890.4979054193918	32.128	0.07238	32.128	32.104	32.177	0	309	55	1.435777	0.032060027	1.435777	292.0002	0	6.520172						94	4	2	NaN	NaN	NaN	0.094712	1	5932	5932		36.586	9.8549	1	11729			42	4624	30	30	35	35					0.04175284011500935
AAGANPAQ	8	Unmodified	_AAGANPAQ_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3420288383	1	699.342029	698.334752	1.3588	0.00095026	3.4101	0.0023849	4.7689	0.0033351	699.3456617205237	25.346	0.21712	25.334	25.262	25.479	-0.012011	633	115	1.2423272	0.06853926	1.2408078	253.70842	0	13.997116						305	10	3	NaN	NaN	NaN	0.82797	1	3124	3124		5.4659	1.4122	1	29210			43	5167	31	31	36	36					-0.02648161439094565
AAGCTAPS	8	Unmodified	_AAGCTAPS_					0	0	0			REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.2923014537	1	677.292301	676.285025	1.8838	0.0012759	7.8406	0.0053103	9.7243	0.0065862	677.2986829229245	16.854	0.071924	16.854	16.806	16.877	0	744	40	1.1755381	0.02351427	1.1755381	240.21915	0	4.8050995						34	4	2	NaN	NaN	NaN	0.84692	1	2761	2761		1.4396	1.0439	1	2178.1	+		44	12862	32	32	37	37					-0.06606612439406945
AAGCTAPS	8	Unmodified						0	0	0			REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.292301	676.285025	1.8838	0.0012759	7.8406	0.0053103	9.7243	0.0065862	677.2986829229245	16.854	0.071924	16.854	16.806	16.877	0	744	40	1.1755381	0.02351427	1.1755381	240.21915		4.8050995	0.032272	-0.0014995	0.0016641	NaN	1.4396	34	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2178.1	+		45	12862	32	32							-0.06606612439406945
AAGEGMVF	8	Unmodified	_AAGEGMVF_					0	0	0			REV__ENSG00000151093|ENST00000280701|OXSM	REV__ENSG00000151093|ENST00000280701|OXSM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.3549017105	1	781.354902	780.347625	1.9045	0.0014881	-4.5217	-0.0035331	-2.6172	-0.002045	781.3514418938606	29.16	0.3137	29.16	29.112	29.425	0	567	91	1.2819146	0.053942442	1.2819146	261.2633	0	10.993866						539	14	2	NaN	NaN	NaN	0.69631	1	4491	4491		19.285	5.5477	1	211280	+		46	10021	33	33	38	38					-0.05133466371216855
AAGEGMVF	8	Unmodified						0	0	0			REV__ENSG00000151093|ENST00000280701|OXSM	REV__ENSG00000151093|ENST00000280701|OXSM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	781.354902	780.347625	1.9045	0.0014881	-4.5217	-0.0035331	-2.6172	-0.002045	781.3514418938606	29.16	0.3137	29.16	29.112	29.425	0	567	91	1.2819146	0.053942442	1.2819146	261.2633		10.993866	-0.0078152	0.00015993	0.00075972	NaN	19.285	539	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211280	+		47	10021	33	33							-0.05133466371216855
AAGEGMVF	8	Unmodified						0	0	0			REV__ENSG00000151093|ENST00000280701|OXSM	REV__ENSG00000151093|ENST00000280701|OXSM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	781.354902	780.347625	1.7005	0.0013287	-4.947	-0.0038653	-3.2465	-0.0025367	781.3512004919359	29.183	0.33784	29.175	29.103	29.441	-0.0077209	567	148	1.2819146	0.08812022	1.2803952	261.2633		17.959534	0.0078152	-0.00017231	-0.00075972	NaN	19.285	797	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225190	+		48	10021	33	33							-0.05133466371216855
AAGFGGPFI	9	Unmodified	_AAGFGGPFI_					0	0	0			REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.4301155641	1	836.430116	835.422839	1.4609	0.001222	5.2601	0.0043997	6.721	0.0056217	836.4357600307328	34.227	0.072376	34.225	34.201	34.274	-0.0012474	417	49	1.3715409	0.028597951	1.3700215	279.21106	0	5.8218384						67	4	2	NaN	NaN	NaN	0.58547	1	5079	5079		6.0903	2.0366	1	4123.8	+		49	10197	34	34	39	39					-0.0014554084848441562
AAGFGGPFI	9	Unmodified						0	0	0			REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	836.430116	835.422839	1.5543	0.0013	2.5894	0.0021658	4.1436	0.0034659	836.432000759975	34.203	0.072392	34.203	34.203	34.276	0	414	37	1.3733286	0.021450758	1.3733286	279.57498		4.3668213	-0.010894	-0.00087771	0.0016535	NaN	6.0903	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3149	+		50	10197	34	34							-0.0014554084848441562
AAGFGGPFI	9	Unmodified						0	0	0			REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	REV__ENST00000470545.1_1_21:45556883-45557341:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	836.430116	835.422839	1.4609	0.001222	5.2601	0.0043997	6.721	0.0056217	836.4357600307328	34.227	0.072376	34.225	34.201	34.274	-0.0012474	417	49	1.3715409	0.028597951	1.3700215	279.21106		5.8218384	0.010894	0.0013562	-0.0016535	NaN	6.0903	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4123.8	+		51	10197	34	34							-0.0014554084848441562
AAGGGLSHG	9	Unmodified	_AAGGGLSHG_					0	0	0			REV__ENST00000454738.5_1_7:6456256-6487444:-|nuORF	REV__ENST00000454738.5_1_7:6456256-6487444:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3529278756001	1	726.352928	725.345651	1.5215	0.0011052	1.0499	0.0007626	2.5714	0.0018678	726.3535760158754	28.026	0.14478	28.026	27.977	28.122	0	627	61	1.24593	0.036034703	1.24593	254.2619	0	7.3537445						154	7	2	NaN	NaN	NaN	0.47587	1	3691	3691		10.605	3.0646	1	18800	+		52	8303	35	35	40	40					-0.0280075906480306
AAGGGWTH	8	Unmodified	_AAGGGWTH_					0	0	0		ENST00000567142.2_1_16:72146385-72146660:+|nuORF	ENST00000567142.2_1_16:72146385-72146660:+|nuORF	ENST00000567142.2_1_16:72146385-72146660:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3423631893	1	756.342363	755.335087	1.3718	0.0010375	-9.1774	-0.0069412	-7.8056	-0.0059037	756.335159545455	26.649	0.12066	26.639	26.614	26.735	-0.010645	561	70	1.2855089	0.04133606	1.2839894	262.14575	0	8.429382						175	6	3	NaN	NaN	NaN	0.82332	1	4080	4080		6.0903	0.62448	1	13450			53	7629	36	36	41	41					-0.0523674171923858
AAGGSSCD	8	Unmodified	_AAGGSSCD_					0	0	0			REV__nc|ENSG00000166507|P52849-2|NDST2	REV__nc|ENSG00000166507|P52849-2|NDST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.12122848595	2	334.121228	666.227904	1.795	0.00059974	-4.2014	-0.0014038	-2.4064	-0.00080403	334.1202524358129	55.1	0.072224	55.1	55.052	55.124	0	1467	40	0.7339432	0.024133325	0.7339432	300.04077	0	9.865845						101	4	3	NaN	NaN	NaN	0.84887	1	2471	2471		0.32989	0	1	9879.2	+		54	10436	37	37	42	42					-0.11856079715778378
AAGHAGVP	8	Unmodified	_AAGHAGVP_					0	0	0			REV__ENST00000378132.2_1_5:140176594-140176870:+|nuORF	REV__ENST00000378132.2_1_5:140176594-140176870:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3521995941	1	679.3522	678.344923	0.89755	0.00060975	-5.4621	-0.0037107	-4.5645	-0.0031009	679.3490721676608	30.462	0.12065	30.456	30.432	30.553	-0.0057545	636	139	1.2405256	0.08292425	1.2390062	253.48404	0	16.944427						294	6	3	NaN	NaN	NaN	0.83849	1	2717	2717		4.0537	0	1	33049	+		55	11949	38	38	43	43					-0.007115537138702166
AAGHAGVP	8	Unmodified						0	0	0			REV__ENST00000378132.2_1_5:140176594-140176870:+|nuORF	REV__ENST00000378132.2_1_5:140176594-140176870:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.3522	678.344923	0.89755	0.00060975	-5.4621	-0.0037107	-4.5645	-0.0031009	679.3490721676608	30.462	0.12065	30.456	30.432	30.553	-0.0057545	636	139	1.2405256	0.08292425	1.2390062	253.48404		16.944427	-0.003388	-0.00020756	-0.00075972	NaN	4.0537	294	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33049	+		56	11949	38	38							-0.007115537138702166
AAGKSAIA	8	Unmodified	_AAGKSAIA_					0	0	0		ENST00000587413.5_1_19:37288486-37288672:+|nuORF;ENST00000589218.5_1_19:37808833-37809055:+|nuORF	ENST00000587413.5_1_19:37288486-37288672:+|nuORF	ENST00000587413.5_1_19:37288486-37288672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3988154357	1	688.398815	687.391539	1.1341	0.00078073	7.5169	0.0051746	8.651	0.0059554	688.4034359456952	33.407	0.096523	33.407	33.359	33.456	0	642	43	1.2369217	0.02522695	1.2369217	252.6818	0	5.153427						79	5	2	NaN	NaN	NaN	0.84512	1	2983	2983		2.4615	1.2197	1	7104			57	7706	39	39	44	44					0.03533886117418206
AAGKSAIA	8	Unmodified						0	0	0		ENST00000587413.5_1_19:37288486-37288672:+|nuORF;ENST00000589218.5_1_19:37808833-37809055:+|nuORF	ENST00000587413.5_1_19:37288486-37288672:+|nuORF	ENST00000587413.5_1_19:37288486-37288672:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	688.398815	687.391539	1.0239	0.00070482	10.956	0.0075419	11.98	0.0082467	688.406949792543	33.382	0.096527	33.38	33.356	33.452	-0.0018501	636	52	1.2405256	0.030634403	1.2390062	253.41798		6.258087	-0.013666	0.0013906	0.0010422	NaN	2.4615	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6031			58	7706	39	39							0.03533886117418206
AAGNECPEL	9	Unmodified	_AAGNECPEL_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.3876584019	1	903.387658	902.380382	1.5427	0.0013936	0.048782	4.4069E-05	1.5915	0.0014377	903.3862941229804	24.381	0.048246	24.381	24.357	24.406	0	384	49	1.3911947	0.028576732	1.3911947	282.87177	0	5.810486						56	3	2	NaN	NaN	NaN	0.58159	1	6120	6120		6.2502	0	1	3708.3			59	2530	40	40	45	45					-0.07471304039029292
AAGPCDPD	8	Unmodified	_AAGPCDPD_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.2821306978999	1	745.282131	744.274854	2.5446	0.0018964	-1.793	-0.0013363	0.7516	0.00056016	745.2820150475852	25.974	0.048283	25.962	25.962	26.01	-0.0116	663	67	1.2243022	0.039676428	1.2227827	249.7304	0	8.093094						69	3	2	NaN	NaN	NaN	0.84692	1	3889	3889		1.4396	1.0439	1	7182.9			60	1326	41	41	46	46					-0.10751220164650022
AAGPCDPD	8	Unmodified						0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.282131	744.274854	1.9759	0.0014726	3.6358	0.0027097	5.6118	0.0041823	745.2828978460062	26.07	0.096546	26.07	26.046	26.143	0	654	64	1.2297117	0.037858725	1.2297117	250.83379		7.722336	0.054182	0.002398	0.0034645	NaN	1.4396	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6815.5			61	1326	41	41							-0.10751220164650022
AAGPDPPT	8	Unmodified	_AAGPDPPT_					0	0	0			REV__ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	REV__ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3464455141999	1	725.346446	724.339169	1.3396	0.00097171	-8.1117	-0.0058838	-6.7721	-0.0049121	725.3405694729713	24.26	0.072412	24.248	24.224	24.296	-0.012749	609	184	1.2567334	0.10975933	1.255214	256.47327	0	22.399612						195	4	2	NaN	NaN	NaN	0.8439	1	3590	3590		3.1533	0	1	40985	+		62	8340	42	42	47	47					-0.03402697016201728
AAGQGPGQ	8	Unmodified	_AAGQGPGQ_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3263787741	1	685.326379	684.319102	-0.24508	-0.00016796	0.24045	0.00016478	-0.0046349	-3.1764E-06	685.327007894837	53.312	0.16791	53.312	53.264	53.432	-0.00053406	669	64	1.2206948	0.037870884	1.2191753	249.38881	0	7.7370453						152	8	3	NaN	NaN	NaN	0.84692	1	2846	2846		1.4396	0	1	15596			63	3951	43	43	48	48					-0.03568447956149612
AAGSHVIIL	9	Unmodified	_AAGSHVIIL_					0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.76617752420003	2	440.766178	879.517802	0.90796	0.0004002	-2.271	-0.001001	-1.3631	-0.0006008	440.7650717083736	21.031	0.12039	21.031	21.007	21.127	0	1371	46	0.79324204	0.027743638	0.79324204	322.70023	0	11.286438						145	6	3	NaN	NaN	NaN	0.23112	1	5796	5796		23.334	4.2161	1	22076			64	4661	44	44	49	49					0.07322392622711504
AAGSHVIIL	9	Unmodified						0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	440.766178	879.517802	0.79919	0.00035225	-1.6785	-0.00073981	-0.87927	-0.00038755	440.76533320383754	21.079	0.12037	21.065	21.017	21.138	-0.014004	1371	40	0.79324204	0.024047077	0.7917226	322.7002		9.782623	0.017219	0.00023695	-0.00075972	NaN	23.334	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20632			65	4661	44	44							0.07322392622711504
AAGVDFEL	8	Unmodified	_AAGVDFEL_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4039603931	1	821.40396	820.396684	1.4438	0.001186	-0.98603	-0.00080993	0.4578	0.00037604	821.4033722165377	27.132	0.072397	27.122	27.098	27.17	-0.010126	501	43	1.3214091	0.025100708	1.3198897	269.0852	0	5.111389						76	4	2	NaN	NaN	NaN	0.72043	1	4912	4912		17.78	1.3637	1	7041.9			66	1723	45	45	50	50					-0.020698548106224735
AAGVGDMVM	9	Unmodified	_AAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.3797362525002	1	850.379736	849.37246	2.3003	0.0019561	-1.7521	-0.00149	0.54812	0.00046611	850.3790899639375	23.176	0.21706	23.176	23.128	23.345	0	456	85	1.348284	0.05014789	1.348284	274.4036	0	10.206116						425	10	4	NaN	NaN	NaN	0.3389	1	5371	5371		16.417	2.3751	1	81546			67	2468	46	46	51	51					-0.05825154560136525
AAGVGDMVM	9	Unmodified	_AAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.3797362525002	1	850.379736	849.37246	1.5709	0.0013359	-0.57003	-0.00048474	1.0009	0.00085114	850.3800766990723	23.199	0.21717	23.186	23.138	23.355	-0.013294	456	88	1.348284	0.051941633	1.3467646	274.4036	0	10.5711975						403	10	4	NaN	NaN	NaN	0.042649	1	5239	5239		50.033	19.422	1	79906			68	2468	46	46	52	52					-0.05825154560136525
AAGVGDMVM	9	Oxidation (M)	_AAGVGDM(Oxidation (M))VM_		AAGVGDM(0.999)VM(0.001)		AAGVGDM(30)VM(-30)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.3746508746002	1	866.374651	865.367374	2.4227	0.002099	-1.2342	-0.0010693	1.1885	0.0010297	866.3740292898038	18.676	0.095919	18.676	18.628	18.724	0	468	67	1.3411216	0.03940189	1.3411216	272.8655	0	8.016754						242	5	3	NaN	NaN	NaN	0.018156	1	5604	5604		74.332	45.665	2	50465			69	2468	46	47	53	53		286;287			-0.07069458422745356
AAGVGDMVM	9	Oxidation (M)	_AAGVGDM(Oxidation (M))VM_		AAGVGDM(1)VM		AAGVGDM(39)VM(-39)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.3746508746002	1	866.374651	865.367374	1.6819	0.0014572	-2.105	-0.0018237	-0.42306	-0.00036653	866.3738524411942	18.674	0.095953	18.66	18.612	18.708	-0.014059	465	73	1.3429124	0.04298401	1.341393	273.22992	0	8.745544						279	5	5	NaN	NaN	NaN	0.014943	1	5465	5465		78.398	55.063	2	48316			70	2468	46	47	54	54		286;287			-0.07069458422745356
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(47)VM(47)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.3695654967001	1	882.369565	881.362289	1.7457	0.0015403	-1.32	-0.0011648	0.42564	0.00037557	882.3687156748917	14.789	0.26418	14.789	14.717	14.981	0	477	82	1.3357477	0.048385262	1.3357477	271.695	0	9.841705						574	12	3	NaN	NaN	NaN	0.04947	1	5817	5817		47.136	23.801	1	88919			71	2468	46	48	55	55		286;287			-0.08313762285376924
AAGVGDMVM	9	2 Oxidation (M)	_AAGVGDM(Oxidation (M))VM(Oxidation (M))_		AAGVGDM(1)VM(1)		AAGVGDM(96)VM(96)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.3695654967001	1	882.369565	881.362289	1.3092	0.0011552	-1.3171	-0.0011622	-0.0079224	-6.9905E-06	882.3686536835769	14.788	0.28821	14.776	14.704	14.992	-0.011738	474	82	1.3375392	0.048385262	1.3360198	272.0594	0	9.841705						562	13	3	NaN	NaN	NaN	0.0081087	1	5693	5693		96.245	66.647	1	78329			72	2468	46	48	56	56		286;287			-0.08313762285376924
AAGVLPQN	8	Unmodified	_AAGVLPQN_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.4202791593	1	769.420279	768.413003	1.3375	0.0010291	-9.6033	-0.007389	-8.2658	-0.0063599	769.4129252782583	29.062	0.12065	29.055	29.031	29.151	-0.0077209	543	67	1.296287	0.039511442	1.2947675	264.26343	0	8.054871						139	6	2	NaN	NaN	NaN	0.82332	1	4263	4263		6.0903	2.5171	1	16352			73	7970	47	49	57	57					0.019532711461351937
AAGVLPQN	8	Unmodified						0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.420279	768.413003	1.4996	0.0011538	-8.7105	-0.006702	-7.2109	-0.0055482	769.4134941262886	29.063	0.12066	29.063	29.015	29.136	0	543	58	1.296287	0.03412521	1.296287	264.26343		6.956848	0.0042687	0.00025984	0.00075972	NaN	6.0903	134	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16140			74	7970	47	49							0.019532711461351937
AAHAAAPK	8	Unmodified	_AAHAAAPK_					0	0	0			REV__ENST00000583444.1_1_17:80189502-80189688:+|nuORF	REV__ENST00000583444.1_1_17:80189502-80189688:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.410048824	1	736.410049	735.402772	1.5243	0.0011225	-10.935	-0.008053	-9.4112	-0.0069305	736.4023949970212	54.5	0.072205	54.5	54.476	54.548	0	570	67	1.2801172	0.039553523	1.2801172	261.17242	0	8.069824						116	4	3	NaN	NaN	NaN	0.8439	1	3833	3833		3.1533	1.483	1	11295	+		75	12872	48	50	58	58					0.024487082115570047
AAHAAAPK	8	Unmodified						0	0	0			REV__ENST00000583444.1_1_17:80189502-80189688:+|nuORF	REV__ENST00000583444.1_1_17:80189502-80189688:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	736.410049	735.402772	1.5243	0.0011225	-10.935	-0.008053	-9.4112	-0.0069305	736.4023949970212	54.5	0.072205	54.5	54.476	54.548	0	570	67	1.2801172	0.039553523	1.2801172	261.17242		8.069824	0.0013491	-0.00055994	-0.00013899	NaN	3.1533	116	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11295	+		76	12872	48	50							0.024487082115570047
AAHHPHLA	8	Unmodified	_AAHHPHLA_					0	0	0			REV__nc|ENSG00000178573|O75444|MAF	REV__nc|ENSG00000178573|O75444|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4427459359001	1	853.442746	852.435469	1.842	0.0015721	-0.79503	-0.00067851	1.047	0.00089354	853.4417522256988	55.124	0.09642	55.124	55.076	55.172	0	348	58	1.412609	0.0338825	1.412609	287.4786	0	6.8953857						98	5	2	NaN	NaN	NaN	0.84651	1	5419	5419		1.6704	0	1	13532	+		77	10791	49	51	59	59					0.003349153344174738
AAHLECIFR	9	Unmodified	_AAHLECIFR_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2738437683	2	530.273844	1058.53313	1.2633	0.00066991	4.7362	0.0025115	5.9995	0.0031814	530.2766054977556	34.203	0.048199	34.203	34.155	34.203	0	1272	52	0.854179	0.031334043	0.854179	346.58563	0	12.713898						85	3	3	NaN	NaN	NaN	0.31737	1	11025	11025		17.799	4.7961	1	18622			78	5841	50	52	60	60					0.006209361482433451
AAHLPILVL	9	Unmodified	_AAHLPILVL_					0	0	0			REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.80784537364997	2	473.807845	945.601138	1.4041	0.00066527	-2.7789	-0.0013167	-1.3748	-0.00065138	473.80605619995225	28.412	0.096512	28.412	28.363	28.46	0	1287	58	0.8449601	0.03505075	0.8449601	343.3704	0	14.243744						139	5	3	NaN	NaN	NaN	0.36886	1	6980	6980		15.013	0	1	15414	+		79	10489	51	53	61	61					0.12616129070545412
AAHLPILVL	9	Unmodified						0	0	0			REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.807845	945.601138	1.4041	0.00066527	-2.7789	-0.0013167	-1.3748	-0.00065138	473.80605619995225	28.412	0.096512	28.412	28.363	28.46	0	1287	58	0.8449601	0.03505075	0.8449601	343.3704		14.243744	-0.0072459	-0.00066468	0.00075972	NaN	15.013	139	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15414	+		80	10489	51	53							0.12616129070545412
AAHMCSSAPLA	11	Unmodified	_AAHMCSSAPLA_					0	0	0		ENST00000456970.6_1_16:16251574-16267200:-|nuORF	ENST00000456970.6_1_16:16251574-16267200:-|nuORF	ENST00000456970.6_1_16:16251574-16267200:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7415191846501	2	529.741519	1057.46849	1.1087	0.00058732	-10.886	-0.0057666	-9.777	-0.0051793	529.7358589333588	20.309	0.1204	20.295	20.271	20.391	-0.014141	1335	37	0.8154261	0.02216971	0.81390667	330.86588	0	8.995544						121	6	3	NaN	NaN	NaN	0.69801	1	10741	10741		7.5876	1.3374	1	11123			81	7063	52	54	62	62					-0.05795006720040874
AAHTAAPA	8	Unmodified	_AAHTAAPA_					0	0	0			REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804	1	709.362764	708.355488	1.7208	0.0012207	0.2449	0.00017372	1.9657	0.0013944	709.3622705089664	26.022	0.096539	26.022	25.998	26.094	0	618	61	1.2513325	0.03601551	1.2513325	255.47797	0	7.3530884						78	5	2	NaN	NaN	NaN	0.8439	1	3391	3391		3.1533	0	1	4730.1	+		82	10187	53	55	63	63					-0.010355710594353695
AAHTLVMKINA	11	Unmodified	_AAHTLVMKINA_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8289831337502	2	584.828983	1167.64341	1.7071	0.00099837	2.7967	0.0016356	4.5038	0.0026339	584.8302713732994	20.357	0.096392	20.343	20.319	20.415	-0.014141	1191	37	0.90387505	0.02205491	0.9023556	366.30945	0	8.93811						84	5	2	NaN	NaN	NaN	0.75376	1	14878	14878		3.9281	1.7518	1	6122.1			83	541	54	56	64	64					0.06629736416653031
AAHTLVMKINA	11	Unmodified						0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.828983	1167.64341	1.8843	0.001102	-0.29664	-0.00017348	1.5877	0.00092852	584.8286173838204	20.237	0.096146	20.237	20.189	20.285	0	1188	40	0.90571284	0.023891509	0.90571284	367.0543		9.682404	-0.052963	-0.0017806	0.0016786	NaN	3.9281	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6003.9			84	541	54	56							0.06629736416653031
AAIGLVIYY	9	Unmodified	_AAIGLVIYY_					0	0	0		ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5607953861	1	982.560795	981.553519	1.1971	0.0011762	0.36954	0.00036309	1.5666	0.0015393	982.5611268609331	31.379	0.096512	31.374	31.35	31.446	-0.0050716	150	49	1.5299006	0.028337836	1.5283811	310.69766	0	5.754944						143	5	3	NaN	NaN	NaN	0.10053	1	7774	7774		35.745	13.618	1	14192			85	5206	55	57	65	65					0.062004300797070755
AAKGPGAH	8	Unmodified	_AAKGPGAH_					0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486956	1	708.378749	707.371472	1.5583	0.0011039	-0.87708	-0.0006213	0.68121	0.00048255	708.378533615456	17.717	0.095846	17.717	17.669	17.765	0	1491	67	0.7190863	0.04086095	0.7190863	146.81595	0	8.342575						93	5	2	NaN	NaN	NaN	0.84887	1	3374	3374		0.32989	0.32989	1	10537			86	4348	56	58	66	66					0.006081351774696486
AAKGPGAH	8	Unmodified						0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.378749	707.371472	1.621	0.0011483	0.8223	0.0005825	2.4433	0.0017308	708.379729080945	17.81	0.095865	17.796	17.748	17.844	-0.013784	1494	61	0.7172283	0.037142277	0.71570885	146.43658		7.5833435	0.039484	0.00061035	-0.0016887	NaN	0.32989	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11165			87	4348	56	58							0.006081351774696486
AAKLVGLL	8	Unmodified	_AAKLVGLL_					0	0	0			REV__ENSG00000171695|ENST00000302096|LKAAEAR1	REV__ENSG00000171695|ENST00000302096|LKAAEAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.5291013272002	1	784.529101	783.521825	-0.015072	-1.1824E-05	5.0165	0.0039356	5.0014	0.0039238	784.5324067915286	54.066	0.1918	54.065	54.017	54.209	-0.00059128	432	154	1.3625998	0.09137499	1.3610804	277.68805	0	18.621582						430	9	4	NaN	NaN	NaN	0.84876	1	4461	4461		0.39566	0	1	113160	+		88	10630	57	59	67	67					0.12140482116433304
AALFTCAA	8	Unmodified	_AALFTCAA_					0	0	0			REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3756371525999	1	767.375637	766.368361	0.41496	0.00031843	9.2927	0.007131	9.7077	0.0074495	767.383983897011	46.628	0.14385	46.638	46.614	46.757	0.0098152	546	40	1.294491	0.023346424	1.2929716	263.90958	0	4.7596436						76	7	2	NaN	NaN	NaN	0.8439	1	4228	4228		3.1533	1.483	1	5000.1	+		89	8494	58	60	68	68					-0.024168759915710325
AALFTCAA	8	Unmodified						0	0	0			REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.375637	766.368361	0.41496	0.00031843	9.2927	0.007131	9.7077	0.0074495	767.383983897011	46.628	0.14385	46.638	46.614	46.757	0.0098152	546	40	1.294491	0.023346424	1.2929716	263.90958		4.7596436	0.016145	-2.9084E-05	-0.00075972	NaN	3.1533	76	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5000.1	+		90	8494	58	60							-0.024168759915710325
AALGAAHT	8	Unmodified	_AALGAAHT_					0	0	0			REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF	REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3784143446	1	711.378414	710.371138	1.469	0.001045	-5.5559	-0.0039523	-4.0869	-0.0029073	711.3745008091569	24.357	0.096539	24.344	24.296	24.393	-0.012747	618	49	1.2513325	0.028809309	1.2498131	255.46425	0	5.8815155						74	5	2	NaN	NaN	NaN	0.84692	1	3371	3371		1.4396	0	1	5263.9	+		91	12833	59	61	69	69					0.004367154576016219
AALSYGRI	8	Unmodified	_AALSYGRI_					0	0	0		ENST00000273610.3_1_3:48599503-48599590:-|nuORF	ENST00000273610.3_1_3:48599503-48599590:-|nuORF	ENST00000273610.3_1_3:48599503-48599590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.74270242790004	2	425.742702	849.470852	0.65735	0.00027986	-4.6436	-0.001977	-3.9863	-0.0016971	425.7408700611492	32.562	0.14482	32.558	32.486	32.631	-0.0031052	1350	43	0.80618626	0.025878608	0.8046668	328.14426	0	10.533447						164	7	3	NaN	NaN	NaN	0.81251	1	5247	5247		7.5404	0	1	12101			92	6344	60	62	70	70					0.04009533071575788
AAMGGPFH	8	Unmodified	_AAMGGPFH_					0	0	0			REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|61|2|anti-sense	REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|61|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.18142343955	2	394.181423	786.348294	1.3447	0.00053005	-1.503	-0.00059245	-0.15831	-6.2404E-05	394.18072325919707	15.63	0.096066	15.63	15.63	15.726	0	1413	73	0.7673241	0.044449985	0.7673241	312.7241	0	18.115662						110	5	2	NaN	NaN	NaN	0.83849	1	4582	4582		4.0537	2.3833	1	10071	+		93	13354	61	63	71	71					-0.05342626931508221
AAMKGLGK	8	Unmodified	_AAMKGLGK_					0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.4494707977001	1	775.449471	774.442194	2.0899	0.0016206	-5.2432	-0.0040659	-3.1534	-0.0024453	775.4456254591086	26.118	0.16891	26.107	26.083	26.252	-0.011137	510	55	1.316029	0.032289624	1.3145095	268.2514	0	6.5816956						163	8	2	NaN	NaN	NaN	0.80071	1	4347	4347		9.1232	1.533	1	21483			94	2667	62	64	72	72					0.04595092170779935
AAMKGLGK	8	Unmodified						0	0	0		ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	ENSG00000130762|ENST00000378378|ARHGEF16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.449471	774.442194	2.1509	0.0016679	-6.9051	-0.0053546	-4.7542	-0.0036866	775.4440592987527	26.336	0.096571	26.336	26.263	26.36	0	513	43	1.3142352	0.02511406	1.3142352	267.88577		5.1190796	0.11428	-0.0010887	-0.00013716	NaN	9.1232	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5756.3			95	2667	62	64							0.04595092170779935
AANGLPNP	8	Unmodified	_AANGLPNP_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3889790309	1	753.388979	752.381703	1.351	0.0010178	-3.4751	-0.0026181	-2.1241	-0.0016003	753.3854926041964	27.326	0.096531	27.326	27.277	27.374	0	537	91	1.2998781	0.053890586	1.2998781	265.09454	0	10.990326						175	5	2	NaN	NaN	NaN	0.82797	1	4102	4102		5.4659	0	1	17278			96	429	63	65	73	73					-0.004393018879568444
AANPHSFVF	9	Unmodified	_AANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.24560925760005	2	495.245609	988.476666	1.5643	0.00077469	-0.59211	-0.00029324	0.97215	0.00048145	495.2447794641292	21.44	0.12049	21.44	21.392	21.513	0	1293	40	0.84127116	0.023982108	0.84127116	341.65875	0	9.739655						125	6	3	NaN	NaN	NaN	0.29341	1	8156	8156		19.336	9.7248	1	15107			97	2672	64	66	74	74					-0.01803368416756257
AANQQPLWK	9	Unmodified	_AANQQPLWK_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.28526573435	2	528.285266	1054.55598	1.3447	0.00071036	6.6239	0.0034993	7.9685	0.0042097	528.2886169475088	24.043	0.072374	24.031	24.006	24.079	-0.012749	1290	76	0.84311575	0.046094477	0.8415963	342.11322	0	18.703888						101	4	2	NaN	NaN	NaN	0.62619	1	10619	10619		4.4131	0.84331	1	7902.8	+		98	8603	65	67	75	75					0.030882785373478328
AAPAGGKK	8	Unmodified	_AAPAGGKK_					0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.4147998509001	1	699.4148	698.407523	-0.47986	-0.00033562	-5.3181	-0.0037196	-5.798	-0.0040552	699.4105109842116	58.458	0.071983	58.458	58.41	58.482	-0.00048065	633	49	1.2423272	0.028824687	1.2408078	253.70795	0	5.8865967						67	4	2	NaN	NaN	NaN	0.84876	1	3134	3134		0.39566	0.065779	1	5486.2	+		99	10281	66	68	76	76					0.046255923543299104
AAPAGGKK	8	Unmodified						0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	699.4148	698.407523	1.2795	0.00089487	-8.5243	-0.005962	-7.2449	-0.0050672	699.4086904581018	58.461	0.16788	58.461	58.365	58.533	0	636	46	1.2405256	0.027021766	1.2405256	253.34004		5.5183716	0.0014781	-0.00098089	-0.0001411	NaN	0.39566	83	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4961.4	+		100	10281	66	68							0.046255923543299104
AAPAGGKK	8	Unmodified						0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	699.4148	698.407523	-0.47986	-0.00033562	-5.3181	-0.0037196	-5.798	-0.0040552	699.4105109842116	58.458	0.071983	58.458	58.41	58.482	-0.00048065	633	49	1.2423272	0.028824687	1.2408078	253.70795		5.8865967	-0.0014781	0.0012616	0.0001411	NaN	0.39566	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5486.2	+		101	10281	66	68							0.046255923543299104
AAPCHCLF	8	Unmodified	_AAPCHCLF_					0	0	0			REV__ENST00000262715.9_2_14:20872800-20872851:-|nuORF	REV__ENST00000262715.9_2_14:20872800-20872851:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.19093388085	2	431.190934	860.367315	1.4437	0.0006225	1.6994	0.00073277	3.1431	0.0013553	431.19080625367087	29.57	0.048292	29.57	29.546	29.594	0	1497	28	0.71537006	0.01672399	0.71537006	291.12045	0	6.805847						33	3	2	NaN	NaN	NaN	0.84651	1	5532	5532		1.6704	0.2308	1	2339.1	+		102	11554	67	69	77	77					-0.06845413632106556
AAPGAVGG	8	Unmodified	_AAPGAVGG_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	1.1287	0.00033879	4.6625	0.0013995	5.7912	0.0017383	300.16237361970855	41.401	0.16851	41.401	41.281	41.45	0	1518	52	0.7023569	0.03161037	0.7023569	287.7808	0	12.951874						179	8	3	NaN	NaN	NaN	0.84876	1	601	601		0.39566	0	1	27716			103	5209	68	70	78	78					-0.007746449794581167
AAPGPGAA	8	Unmodified	_AAPGPGAA_					0	0	0		ENST00000224862.7_1_10:104182019-104182794:+|nuORF	REV__ENST00000596099.1_1_19:17393503-17393812:+|nuORF	REV__ENST00000596099.1_1_19:17393503-17393812:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.3147514553	1	611.314751	610.307475	1.1891	0.0007269	-7.9048	-0.0048323	-6.7157	-0.0041054	611.3110456734787	54.524	0.16853	54.524	54.476	54.644	0	723	112	1.1881942	0.06693947	1.1881942	243.32533	0	13.708267						276	8	2	NaN	NaN	NaN	0.84876	1	812	812		0.39566	0	1	22631			104	6240	69	71	79	79					-0.013266449794855362
AAPHVVGS	8	Unmodified	_AAPHVVGS_					0	0	0		nc|ENSG00000260220|A0A096LP49|CCDC187;ENSG00000260220|ENST00000638797|CCDC187	nc|ENSG00000260220|A0A096LP49|CCDC187	nc|ENSG00000260220|A0A096LP49|CCDC187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088002	1	737.394064	736.386788	3.0265	0.0022317	-7.322	-0.0053992	-4.2955	-0.0031674	737.3893450193043	22.042	0.024027	22.029	22.005	22.029	-0.013731	999	37	1.0210962	0.021905541	1.0195768	208.32127	0	4.4691315						31	2	2	NaN	NaN	NaN	0.83849	1	3778	3778		4.0537	0.48046	1	1494.6			105	6141	70	72	80	80					0.008050019746747239
AAPKVKGG	8	Unmodified	_AAPKVKGG_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.4460999793002	1	727.4461	726.438824	1.4048	0.0010219	-0.15981	-0.00011625	1.245	0.00090568	727.4462356943649	45.383	0.14368	45.383	45.239	45.383	0	576	31	1.2765218	0.017977	1.2765218	260.49765	0	3.6685486						60	7	2	NaN	NaN	NaN	0.84876	1	3721	3721		0.39566	0.065779	1	3185.2			106	2444	71	73	81	81					0.06466165388440004
AAPPAEVHR	9	Unmodified	_AAPPAEVHR_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.2565082949	2	474.256508	946.498464	0.39829	0.00018889	-0.30591	-0.00014508	0.092381	4.3812E-05	474.25644915562674	12.894	0.14381	12.885	12.813	12.957	-0.00947	1359	55	0.8006399	0.03328693	0.7991205	325.35538	0	13.526794						196	7	3	NaN	NaN	NaN	0.29681	1	6866	6866		19.118	1.338	1	31903			107	958	72	74	82	82					0.023074363318073665
AAPPAEVHR	9	Unmodified						0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.256508	946.498464	0.85218	0.00040415	-2.4109	-0.0011434	-1.5587	-0.00073922	474.2553778181735	12.868	0.19218	12.868	12.82	13.012	0	1359	43	0.8006399	0.025887072	0.8006399	325.35538		10.519684	-0.0082492	-0.00098006	0.00075972	NaN	19.118	231	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33986			108	958	72	74							0.023074363318073665
AAPVGGEG	8	Unmodified	_AAPVGGEG_					0	0	0			REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF	REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3202307637001	1	657.320231	656.312954	1.2373	0.00081328	6.1702	0.0040558	7.4075	0.0048691	657.3245741002911	20.79	0.024109	20.79	20.766	20.79	0	738	49	1.179155	0.02893281	1.179155	241.10362	0	5.9159393						41	2	2	NaN	NaN	NaN	0.84651	1	2193	2193		1.6704	0	1	3208.2	+		109	12577	73	75	83	83					-0.0289496618765952
AAPVGGEG	8	Unmodified						0	0	0			REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF	REV__ENST00000517503.1_3_8:144103316-144103727:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	657.320231	656.312954	1.2373	0.00081328	6.1702	0.0040558	7.4075	0.0048691	657.3245741002911	20.79	0.024109	20.79	20.766	20.79	0	738	49	1.179155	0.02893281	1.179155	241.10362		5.9159393	0	0	0	NaN	1.6704	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3208.2	+		110	12577	73	75							-0.0289496618765952
AARGNIVL	8	Unmodified	_AARGNIVL_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.4941128044001	1	813.494113	812.486836	2.0617	0.0016772	6.5282	0.0053106	8.5899	0.0069878	813.4973391089125	58.029	0.048061	58.029	58.005	58.053	0	435	52	1.360811	0.030403137	1.360811	277.15323	0	6.1921387						109	3	4	NaN	NaN	NaN	0.84727	1	4922	4922		1.2418	0	1	9387.5			111	4044	74	76	84	84					0.07309239308460747
AARGNIVL	8	Unmodified						0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	813.494113	812.486836	-0.018578	-1.5113E-05	4.0428	0.0032888	4.0242	0.0032737	813.4972137407926	58.027	0.047977	58.026	58.002	58.05	-0.00050735	426	58	1.3661768	0.033976436	1.3646574	278.2461		6.9198914	-0.0014002	-0.001052	0.0019232	NaN	1.2418	75	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8000			112	4044	74	76							0.07309239308460747
AARKPSGA	8	Unmodified	_AARKPSGA_					0	0	0		ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.2193945071	2	379.219395	756.424236	2.143	0.00081265	2.1421	0.00081231	4.285	0.001625	379.22015837008746	25.756	0.16895	25.745	25.721	25.89	-0.0116	1440	58	0.7506418	0.035233438	0.7491224	306.1322	0	14.369171						116	8	2	NaN	NaN	NaN	0.80692	1	4100	4100		8.2903	0	1	14248			113	5617	75	77	85	85					0.03628093240274666
AASAQPPP	8	Unmodified	_AASAQPPP_					0	0	0		SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|33|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|15|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|33|3|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|5|1|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|33|3|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|33|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3780799936001	1	738.37808	737.370804	1.6335	0.0012061	4.5938	0.0033919	6.2273	0.0045981	738.3813265275048	28.194	0.1448	28.194	28.17	28.315	0	1206	46	0.894683	0.02758503	0.894683	182.5263	0	5.6276855						121	7	3	NaN	NaN	NaN	0.84782	1	3876	3876		0.92586	0	1	13961			114	13702	76	78	86	86					-0.00838704262241663
AASDSYLE	8	Unmodified	_AASDSYLE_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.19016533089996	2	428.190165	854.365778	2.5172	0.0010778	-0.70335	-0.00030117	1.8138	0.00077665	428.18983710251507	25.853	0.096542	25.841	25.817	25.914	-0.0116	1422	28	0.7617651	0.01667869	0.7602457	310.03516	0	6.788147						53	5	2	NaN	NaN	NaN	0.80692	1	5314	5314		8.2903	2.8244	1	3072			115	4992	77	79	87	87					-0.06723052915515382
AASDSYLE	8	Unmodified						0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	428.190165	854.365778	1.8543	0.00079401	0.77048	0.00032991	2.6248	0.0011239	428.18952724864255	25.853	0.072371	25.853	25.829	25.901	0	1422	31	0.7617651	0.018532872	0.7617651	310.03516		7.542816	0.0059275	0.0005998	0.00075972	NaN	8.2903	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4687.3			116	4992	77	79							-0.06723052915515382
AASGDFWVL	9	Unmodified	_AASGDFWVL_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4727086603001	1	965.472709	964.465432	1.2719	0.001228	-0.81899	-0.00079071	0.45294	0.0004373	965.471252687858	32.177	0.16888	32.177	32.128	32.297	0	279	67	1.4535767	0.0391469	1.4535767	295.26993	0	7.952057						233	8	3	NaN	NaN	NaN	0.17818	1	7460	7460		26.732	2.8811	1	25553			117	4714	78	80	88	88					-0.0182219051090442
AASGDFWVL	9	Unmodified						0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	965.472709	964.465432	0.72384	0.00069885	0.1804	0.00017417	0.90424	0.00087302	965.4729942843733	32.175	0.14478	32.172	32.148	32.292	-0.0037613	279	58	1.4535767	0.033799767	1.4520572	295.26993		6.8658447	-0.0024357	0.00051346	-0.00075972	NaN	26.732	222	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25246			118	4714	78	80							-0.0182219051090442
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3;ENSG00000187837|ENST00000343677|H1-2	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.8040195935001	2	552.80402	1103.59349	1.1678	0.00064556	-0.48125	-0.00026604	0.68654	0.00037952	552.8034146505096	12.39	0.21599	12.381	12.309	12.525	-0.0088415	1188	34	0.90571284	0.020213723	0.9041934	367.3029	0	8.197479						135	10	2	NaN	NaN	NaN	0.3939	1	12653	12653		22.269	1.7552	1	11044			119	2426;5524	79	81	89	89					0.04583325012345085
AASKQPIVYPW	11	Unmodified	_AASKQPIVYPW_					0	0	0		ENSG00000198353|ENST00000430889|HOXC4	ENSG00000198353|ENST00000430889|HOXC4	ENSG00000198353|ENST00000430889|HOXC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.34278061325	2	630.342781	1258.67101	1.4783	0.00093185	-4.0069	-0.0025257	-2.5286	-0.0015939	630.340315001322	19.25	0.16823	19.236	19.14	19.308	-0.014141	1095	55	0.9625867	0.03297192	0.96106726	389.77377	0	13.351105						284	8	4	NaN	NaN	NaN	0.059285	1	17203	17203		47.482	4.4868	1	56965			120	5770	80	82	90	90					0.05201962948513028
AASKQPIVYPW	11	Unmodified						0	0	0		ENSG00000198353|ENST00000430889|HOXC4	ENSG00000198353|ENST00000430889|HOXC4	ENSG00000198353|ENST00000430889|HOXC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.342781	1258.67101	1.7972	0.0011328	-9.4317	-0.0059452	-7.6346	-0.0048124	630.33835237185	19.228	0.26394	19.228	19.108	19.372	0	1095	70	0.9625867	0.042142153	0.9625867	389.77377		17.064331	-0.0039228	-0.0064534	0.00075972	NaN	47.482	332	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77327			121	5770	80	82							0.05201962948513028
AASPPELAM	9	Unmodified	_AASPPELAM_					0	0	0		ENST00000263026.9_1_16:22217912-22237237:+|nuORF	ENST00000263026.9_1_16:22217912-22237237:+|nuORF	ENST00000263026.9_1_16:22217912-22237237:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.433880313	1	886.43388	885.426604	2.1272	0.0018856	-1.0411	-0.00092283	1.0862	0.0009628	886.4326128002239	22.67	0.072378	22.67	22.621	22.694	0	453	40	1.3500742	0.0232718	1.3500742	274.58966	0	4.7332153						63	4	2	NaN	NaN	NaN	0.062072	1	5876	5876		41.785	21.229	1	4133.3			122	6312	81	83	91	91					-0.020692391369379948
AASPPELAM	9	Unmodified	_AASPPELAM_					0	0	0		ENST00000263026.9_1_16:22217912-22237237:+|nuORF	ENST00000263026.9_1_16:22217912-22237237:+|nuORF	ENST00000263026.9_1_16:22217912-22237237:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.433880313	1	886.43388	885.426604	2.2322	0.0019787	-1.562	-0.0013846	0.67027	0.00059415	886.4319448582158	22.669	0.072384	22.655	22.631	22.704	-0.01354	453	37	1.3500742	0.021480441	1.3485547	274.58966	0	4.3688965						46	4	2	NaN	NaN	NaN	0.056143	1	5754	5754		44.302	14.704	1	3279.6			123	6312	81	83	92	92					-0.020692391369379948
AASPSGSG	8	Unmodified	_AASPSGSG_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN;REV__nc|ENSG00000169083|P10275-3|AR	REV__ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.2838452574	1	633.283845	632.276569	0.73296	0.00046417	-2.199	-0.0013926	-1.466	-0.0009284	633.2821064687066	43.942	0.14374	43.954	43.93	44.074	0.011429	696	43	1.2044523	0.025283694	1.2029328	246.46721	0	5.173813						91	7	2	NaN	NaN	NaN	0.84727	1	1442	1442		1.2418	0	1	5441.6	+		124	10560;10534	82	84	93	93					-0.054278430843737624
AASPVAISA	9	Unmodified	_AASPVAISA_					0	0	0		ENST00000596658.1_1_19:50433558-50434160:+|nuORF;ENST00000423777.6_1_19:50432412-50434160:+|nuORF;ENST00000597227.5_1_19:50432514-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.4355948724999	1	786.435595	785.428318	2.1021	0.0016532	1.8269	0.0014367	3.9291	0.0030899	786.4363744064982	19.78	0.096094	19.78	19.756	19.852	0	558	37	1.2873057	0.021558523	1.2873057	262.3327	0	4.39328						62	5	2	NaN	NaN	NaN	0.10956	1	4572	4572		34.439	9.4778	1	4380.8			125	6932	83	85	94	94					0.027021379433222137
AASPVAISA	9	Unmodified						0	0	0		ENST00000596658.1_1_19:50433558-50434160:+|nuORF;ENST00000423777.6_1_19:50432412-50434160:+|nuORF;ENST00000597227.5_1_19:50432514-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	786.435595	785.428318	2.1347	0.0016788	1.4657	0.0011527	3.6004	0.0028314	786.4366713797305	19.779	0.072199	19.765	19.741	19.813	-0.014141	552	40	1.2908988	0.023356318	1.2893794	263.0649		4.759674	-0.0075142	-0.0001516	0.0010368	NaN	34.439	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4657.5			126	6932	83	85							0.027021379433222137
AASSVSVVL	9	Unmodified	_AASSVSVVL_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000165240|Q04656-4|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4774596872002	1	832.47746	831.470183	1.9392	0.0016143	1.2447	0.0010362	3.1838	0.0026505	832.4785232219643	23.851	0.048164	23.851	23.827	23.875	0	447	37	1.3536539	0.02147603	1.3536539	275.5909	0	4.3723145						50	3	2	NaN	NaN	NaN	0.29681	1	5158	5158		19.118	6.1155	1	3757.9			127	2365;4388	84	86	95	95					0.04770693631871836
AASSVSVVL	9	Unmodified						0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000165240|Q04656-4|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.47746	831.470183	2.0974	0.0017461	-1.0766	-0.00089624	1.0208	0.00084982	832.4775421991744	23.875	0.072304	23.861	23.813	23.886	-0.013048	447	37	1.3536539	0.02147603	1.3521345	275.5909		4.372284	0.0054284	-0.0010627	-0.00075972	NaN	19.118	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3748			128	2365;4388	84	86							0.04770693631871836
AATARRGA	8	Unmodified	_AATARRGA_					0	0	0		ENST00000368467.3_1_1:154909248-154909302:-|nuORF	ENST00000368467.3_1_1:154909248-154909302:-|nuORF	ENST00000368467.3_1_1:154909248-154909302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.4376605580001	1	773.437661	772.430384	1.2097	0.00093561	-8.2599	-0.0063885	-7.0502	-0.0054529	773.4313236195422	20.911	0.072268	20.897	20.873	20.945	-0.014086	513	58	1.3142352	0.03408885	1.3127158	267.89795	0	6.9487915						117	4	2	NaN	NaN	NaN	0.5868	1	4316	4316		26.115	0	1	11655			129	6631	85	87	96	96					0.03506611471800625
AATEPIRVKQA	11	Unmodified	_AATEPIRVKQA_					0	0	0		nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENSG00000142661|ENST00000374434|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.23130010853333	3	395.2313	1182.67207	1.2813	0.0005064	0.39325	0.00015543	1.6745	0.00066182	395.23135902732724	21.031	0.12041	21.017	20.969	21.089	-0.014086	1515	31	0.7042165	0.018597364	0.70269704	428.02438	0	11.303497						82	6	2	NaN	NaN	NaN	0.70255	1	15329	15329		7.2894	1.1487	1	5999.9			130	3382	86	88	97	97					0.08804177317415451
AATEQEISL	9	Unmodified	_AATEQEISL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.4836672771002	1	961.483667	960.476391	1.5175	0.0014591	-0.72341	-0.00069555	0.79414	0.00076355	961.483077739136	21.729	0.14441	21.715	21.691	21.836	-0.013897	309	85	1.435777	0.049881697	1.4342575	291.67126	0	10.13324						255	7	3	NaN	NaN	NaN	0.022082	1	7198	7198		69.363	5.6325	1	42131			131	1839	87	89	98	98					-0.005428329272717747
AATPGDPEL	9	Unmodified	_AATPGDPEL_					0	0	0		nc|ENSG00000154305|Q5JRA6-4|MIA3;ENST00000495210.1_1_1:222817751-222823660:+|nuORF	nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-4|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4203387388001	1	870.420339	869.413062	1.832	0.0015946	0.051245	4.4605E-05	1.8833	0.0016392	870.4202677700738	19.012	0.11991	19.012	18.964	19.084	0	459	49	1.3464937	0.028649807	1.3464937	273.9386	0	5.828705						126	6	2	NaN	NaN	NaN	0.12328	1	5651	5651		32.453	9.1183	1	8803			132	7965	88	90	99	99					-0.026867736445183255
AATPGDPEL	9	Unmodified	_AATPGDPEL_					0	0	0		nc|ENSG00000154305|Q5JRA6-4|MIA3;ENST00000495210.1_1_1:222817751-222823660:+|nuORF	nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-4|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.4203387388001	1	870.420339	869.413062	1.5123	0.0013164	0.4783	0.00041632	1.9906	0.0017327	870.4208831854359	19.01	0.12009	18.996	18.972	19.092	-0.014059	453	52	1.3500742	0.030442119	1.3485547	274.66702	0	6.193329						104	6	2	NaN	NaN	NaN	0.27442	1	5513	5513		20.555	9.007	1	7680.8			133	7965	88	90	100	100					-0.026867736445183255
AATTVEEIL	9	Unmodified	_AATTVEEIL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5091537461	1	946.509154	945.501877	2.2589	0.0021381	-0.38732	-0.0003666	1.8716	0.0017715	946.5084499163806	25.636	0.2171	25.624	25.576	25.793	-0.0116	306	130	1.4375578	0.076599956	1.4360384	292.09845	0	15.564392						427	10	3	NaN	NaN	NaN	0.094712	1	6834	6834		36.586	8.7976	1	128290			134	3658	89	91	101	101					0.026946415951329072
AATTVEEIL	9	Unmodified						0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	946.509154	945.501877	2.3081	0.0021847	-0.7678	-0.00072673	1.5403	0.0014579	946.5088158556913	25.636	0.21717	25.636	25.612	25.829	0	306	127	1.4375578	0.07486236	1.4375578	292.09845		15.211334	0.0059214	-0.00016658	0.00075972	NaN	36.586	442	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125710			135	3658	89	91							0.026946415951329072
AAVAFDAVL	9	Unmodified	_AAVAFDAVL_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.4825450651	1	876.482545	875.475269	1.4072	0.0012334	-0.43783	-0.00038375	0.96935	0.00084962	876.4828374321722	29.063	0.096504	29.063	29.039	29.136	0	381	94	1.3929803	0.05536437	1.3929803	283.36554	0	11.262451						189	5	3	NaN	NaN	NaN	0.049695	1	5739	5739		47.04	17.442	1	19112			136	6046	90	92	102	102					0.032549974944686255
AAVAFDAVL	9	Unmodified						0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	876.482545	875.475269	0.91313	0.00080034	-0.093761	-8.218E-05	0.81937	0.00071816	876.4818842463388	29.062	0.096523	29.055	29.031	29.127	-0.0077209	378	82	1.3947657	0.048230886	1.3932463	283.72873		9.81131	-0.0042687	0.00015904	0.00013297	NaN	47.04	174	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22275			137	6046	90	92							0.032549974944686255
AAVEPEASVL	10	Unmodified	_AAVEPEASVL_					0	0	0			REV__nc|ENSG00000213889|Q8N819-2|PPM1N	REV__nc|ENSG00000213889|Q8N819-2|PPM1N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5200527834	1	985.520053	984.512776	2.4427	0.0024073	-0.61565	-0.00060673	1.827	0.0018006	985.5190302702274	26.288	0.12069	26.288	26.239	26.36	0	258	64	1.4660252	0.03732586	1.4660252	297.71323	0	7.579956						235	6	3	NaN	NaN	NaN	0.10964	1	8034	8034		44.638	2.3209	1	37892	+		138	13228	91	93	103	103					0.01990043969431099
AAVFSALEL	9	Unmodified	_AAVFSALEL_					0	0	0		ENSG00000152315|ENST00000282146|KCNK13	ENSG00000152315|ENST00000282146|KCNK13	ENSG00000152315|ENST00000282146|KCNK13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5087598156	1	920.50876	919.501483	1.0247	0.00094325	-0.018414	-1.695E-05	1.0063	0.0009263	920.5093599715805	32.827	0.096485	32.824	32.8	32.896	-0.0031052	303	55	1.4393384	0.032053113	1.437819	292.57895	0	6.5155334						119	5	2	NaN	NaN	NaN	0.20577	1	6281	6281		24.961	5.8427	1	11077			139	3770	92	94	104	104					0.038512666659471506
AAVFSALEL	9	Unmodified						0	0	0		ENSG00000152315|ENST00000282146|KCNK13	ENSG00000152315|ENST00000282146|KCNK13	ENSG00000152315|ENST00000282146|KCNK13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	920.50876	919.501483	1.2139	0.0011174	-0.82675	-0.00076103	0.38716	0.00035638	920.5084663401828	32.828	0.12067	32.828	32.804	32.925	0	306	61	1.4375578	0.035618424	1.4375578	292.217		7.240265	0.0020733	-0.00037881	-0.0001306	NaN	24.961	123	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12321			140	3770	92	94							0.038512666659471506
AAVGGGGVE	9	Unmodified	_AAVGGGGVE_					0	0	0		ENST00000203630.9_2_12:6861487-6862330:-|nuORF	ENST00000203630.9_2_12:6861487-6862330:-|nuORF	ENST00000203630.9_2_12:6861487-6862330:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.3573445515	1	716.357345	715.350068	2.0648	0.0014791	6.2896	0.0045056	8.3544	0.0059848	716.3622426452434	23.031	0.048077	23.031	23.007	23.055	0	1026	28	1.0046607	0.016444206	1.0046607	205.07823	0	3.35672						30	3	2	NaN	NaN	NaN	0.65818	1	3522	3522		2.7852	1.3456	1	1852			141	6223	93	95	105	105					-0.01899294641907545
AAVSKRGS	8	Unmodified	_AAVSKRGS_					0	0	0			REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4420772339001	1	775.442077	774.434801	2.6346	0.002043	5.4117	0.0041965	8.0463	0.0062394	775.4469463797857	25.708	0.12062	25.708	25.684	25.805	0	510	235	1.316029	0.14028084	1.316029	268.2514	0	28.594025						545	6	5	NaN	NaN	NaN	0.57691	1	4428	4428		26.732	0	1	409360	+		142	9214	94	96	106	106					0.03856075894714195
AAVSKRGS	8	Unmodified						0	0	0			REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.442077	774.434801	2.6346	0.002043	5.4117	0.0041965	8.0463	0.0062394	775.4469463797857	25.708	0.12062	25.708	25.684	25.805	0	510	235	1.316029	0.14028084	1.316029	268.2514		28.594025	-0.018187	0.00017445	0.00075972	NaN	26.732	545	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409360	+		143	9214	94	96							0.03856075894714195
AAVSKRGS	8	Unmodified						0	0	0			REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	REV__RALGPS2|p.P309L|1|0.12|ENSG00000116191|chr1:178885097-178885097|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.442077	774.434801	2.7496	0.0021321	5.0815	0.0039404	7.831	0.0060725	775.4464744133974	25.756	0.3379	25.745	25.696	26.034	-0.0116	510	175	1.316029	0.10419989	1.3145095	268.2514		21.239487	0.018187	-8.163E-05	-0.00075972	NaN	26.732	796	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360850	+		144	9214	94	96							0.03856075894714195
AAYNTQGA	8	Unmodified	_AAYNTQGA_					0	0	0			REV__tr|U7SIV4|U7SIV4_FUSNU3-oxoacyl-[acyl-carrier-protein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02246PE=3SV=1	REV__tr|U7SIV4|U7SIV4_FUSNU3-oxoacyl-[acyl-carrier-protein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02246PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3631582109	1	795.363158	794.355882	-0.1481	-0.0001178	-1.6203	-0.0012887	-1.7684	-0.0014065	795.3618540472745	55.026	0.047993	55.025	55.025	55.073	-0.0006218	390	397	1.3876231	0.23676765	1.3861036	282.72122	0	48.240204						407	3	3	NaN	NaN	NaN	0.8439	1	4586	4586		3.1533	0	1	55405	+		145	13398	95	97	107	107					-0.04952196130238917
ACFAAGLM	8	Unmodified	_ACFAAGLM_					0	0	0		ENST00000334444.10_1_3:183732224-183735750:-|nuORF	ENST00000334444.10_1_3:183732224-183735750:-|nuORF	ENST00000334444.10_1_3:183732224-183735750:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.18003484354995	2	392.180035	782.345517	1.3878	0.00054427	-3.4432	-0.0013503	-2.0554	-0.00080608	392.17972379867587	29.739	0.072378	29.739	29.715	29.787	0	1458	28	0.7395112	0.016702175	0.7395112	301.41528	0	6.807617						74	4	3	NaN	NaN	NaN	0.84651	1	4521	4521		1.6704	0	1	5360			146	6517	96	98	108	108					-0.05436218380680202
ACGAKGAG	8	Unmodified	_ACGAKGAG_					0	0	0		ENST00000460425.1_1_10:49863935-49864277:-|nuORF	ENST00000460425.1_1_10:49863935-49864277:-|nuORF	ENST00000460425.1_1_10:49863935-49864277:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.2977211826001	1	634.297721	633.290445	2.3493	0.0014902	-9.1297	-0.0057909	-6.7804	-0.0043008	634.2907338600348	25.756	0.096498	25.745	25.672	25.769	-0.0116	1140	64	0.93509084	0.0385316	0.9335714	191.3413	0	7.8844604						91	5	2	NaN	NaN	NaN	0.8439	1	1476	1476		3.1533	0	1	6984.1			147	7073	97	99	109	109					-0.040868888569320916
ACGYIGTL	8	Unmodified	_ACGYIGTL_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19673915275	2	399.196739	796.378925	1.2121	0.00048387	-2.0407	-0.00081465	-0.82862	-0.00033078	399.19581404902345	30.391	0.09655	30.391	30.366	30.463	0	1404	28	0.77288127	0.016669631	0.77288127	314.92102	0	6.7922974						61	5	2	NaN	NaN	NaN	0.84651	1	4711	4711		1.6704	0.2308	1	4308.9			148	3860	98	100	110	110					-0.02740893337113448
ACHCCSEG	8	Unmodified	_ACHCCSEG_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.1223909664	2	405.122391	808.230229	0.69079	0.00027986	-9.8598	-0.0039944	-9.169	-0.0037146	405.1187539360183	35.36	0.24116	35.361	35.24	35.481	0.00053024	1461	49	0.7376554	0.029694438	0.73613596	300.4933	0	12.096405						325	11	3	NaN	NaN	NaN	0.84876	1	4761	4761		0.39566	0.065779	1	55944	+		149	13212	99	101	111	111					-0.1815569057397397
ACHCCSEG	8	Unmodified						0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.122391	808.230229	0.43293	0.00017539	-7.6477	-0.0030983	-7.2148	-0.0029229	405.1195435336262	35.385	0.048286	35.385	35.361	35.41	0	1461	88	0.7376554	0.053765833	0.7376554	300.49326		21.902191	0.012453	0.001323	0.00075972	NaN	0.39566	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5746	+		150	13212	99	101							-0.1815569057397397
ACHCCSEG	8	Unmodified						0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.122391	808.230229	0.69079	0.00027986	-9.8598	-0.0039944	-9.169	-0.0037146	405.1187539360183	35.36	0.24116	35.361	35.24	35.481	0.00053024	1461	49	0.7376554	0.029694438	0.73613596	300.4933		12.096405	-0.012453	-0.00046939	-0.00075972	NaN	0.39566	325	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55944	+		151	13212	99	101							-0.1815569057397397
ACPASLSCGFY	11	Unmodified	_ACPASLSCGFY_					0	0	0			REV__ENSG00000167693|ENST00000336868|NXN	REV__ENSG00000167693|ENST00000336868|NXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7359024905	2	559.735902	1117.45725	0.98942	0.00055382	-6.5791	-0.0036826	-5.5897	-0.0031287	559.7317625994946	35.167	0.14483	35.167	35.143	35.287	-4.5776E-05	1269	46	0.8560222	0.027641773	0.85450274	347.09824	0	11.20813						139	7	4	NaN	NaN	NaN	0.7072	1	13161	13161		6.9844	1.7955	1	12920	+		152	10474	100	102	112	112					-0.09677828814187706
ACTDMGITCPI	11	Unmodified	_ACTDMGITCPI_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.74287024285	2	562.74287	1123.47119	1.5306	0.00086132	-1.491	-0.00083907	0.039527	2.2244E-05	562.741823889714	20.959	0.16848	20.959	20.862	21.031	0	1233	70	0.87812483	0.04235655	0.87812483	356.0371	0	17.173492						232	8	2	NaN	NaN	NaN	0.74155	1	13808	13808		4.7291	0.31598	1	26749			153	5054	101	103	113	113					-0.08560919377418941
ADAFDMFE	8	Unmodified	_ADAFDMFE_					0	0	0			REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8	REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.3658603273001	1	945.36586	944.358584	1.401	0.0013244	0.32015	0.00030266	1.7211	0.0016271	945.3661932255997	26.553	0.26544	26.542	26.518	26.783	-0.010645	357	76	1.407258	0.04461074	1.4057386	285.94678	0	9.064636						387	12	4	NaN	NaN	NaN	0.27293	1	6781	6781		44.247	8.2106	1	57958	+		154	11346	102	104	114	114					-0.11582108787581546
ADAFDMFE	8	Unmodified						0	0	0			REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8	REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	945.36586	944.358584	1.401	0.0013244	0.32015	0.00030266	1.7211	0.0016271	945.3661932255997	26.553	0.26544	26.542	26.518	26.783	-0.010645	357	76	1.407258	0.04461074	1.4057386	285.94678		9.064636	-0.0054688	0.00056196	0.0001323	NaN	44.247	387	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57958	+		155	11346	102	104							-0.11582108787581546
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4414681114	1	1026.44147	1025.43419	1.3522	0.001388	-1.6034	-0.0016458	-0.25115	-0.0002578	1026.4397673558253	40.897	0.072052	40.897	40.849	40.921	0	231	46	1.4820169	0.026641488	1.4820169	300.7949	0	5.4072266						81	4	2	NaN	NaN	NaN	0.025843	1	9580	9580		64.55	43.994	1	6812.9			156	523	103	105	115	115					-0.0775080833566335
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4414681114	1	1026.44147	1025.43419	1.1602	0.0011909	-0.98133	-0.0010073	0.17889	0.00018362	1026.4406593616682	38.684	0.04805	38.684	38.684	38.732	0	228	49	1.4837929	0.028413057	1.4837929	301.15533	0	5.766815						63	3	2	NaN	NaN	NaN	0.032764	1	9581	9581		55.494	30.533	1	4817.7			157	523	103	105	116	116					-0.0775080833566335
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4414681114	1	1026.44147	1025.43419	1.3583	0.0013943	0.071524	7.3415E-05	1.4299	0.0014677	1026.4409762153998	41.017	0.072102	41.017	40.969	41.041	0	234	43	1.4802408	0.024864078	1.4802408	300.43442	0	5.046509						92	4	2	NaN	NaN	NaN	0.032764	1	9582	9582		55.494	30.533	1	8442.8			158	523	103	105	117	117					-0.0775080833566335
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4414681114	1	1026.44147	1025.43419	1.7327	0.0017785	-0.063442	-6.5119E-05	1.6693	0.0017134	1026.4416749758739	38.299	0.43249	38.299	38.203	38.636	0	225	220	1.4855686	0.12964225	1.4855686	301.51575	0	26.312592						1580	19	5	NaN	NaN	NaN	8.7755E-05	1	9584	9584		123.66	87.071	1	895710			159	523	103	105	118	118					-0.0775080833566335
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4414681114	1	1026.44147	1025.43419	1.2172	0.0012494	0.37062	0.00038042	1.5878	0.0016298	1026.4420151057684	40.871	0.096134	40.878	40.782	40.878	0.0074921	228	49	1.4837929	0.028413057	1.4822735	301.15533	0	5.766815						97	5	2	NaN	NaN	NaN	0.036546	1	9394	9394		52.624	27.663	1	8497.2			160	523	103	105	119	119					-0.0775080833566335
ADAFGDELF	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAFGDELF_					1	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF;ENST00000504388.5_1_5:54603829-54620403:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4414681114	1	1026.44147	1025.43419	2.3361	0.0023979	-0.32537	-0.00033397	2.0108	0.0020639	1026.4412413345678	38.297	0.5769	38.301	38.204	38.781	0.0034256	222	211	1.4873441	0.12428141	1.4858247	301.87613	0	25.224548						1831	25	5	NaN	NaN	NaN	0.0018626	1	9397	9397		111.43	79.872	1	869800			161	523	103	105	120	120					-0.0775080833566335
ADARDDLE	8	Unmodified	_ADARDDLE_					0	0	0			REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4006659291999	1	904.400666	903.393389	2.2447	0.0020301	-11.718	-0.010597	-9.4728	-0.0085672	904.3902470112546	25.926	0.16892	25.926	25.877	26.046	0	405	124	1.3786905	0.07322395	1.3786905	280.3246	0	14.888367						208	8	2	NaN	NaN	NaN	0.5868	1	6136	6136		26.115	8.316	1	19005	+		162	8487	104	106	121	121					-0.062171496552878125
ADARDDLE	8	Unmodified						0	0	0			REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	904.400666	903.393389	2.2447	0.0020301	-11.718	-0.010597	-9.4728	-0.0085672	904.3902470112546	25.926	0.16892	25.926	25.877	26.046	0	405	124	1.3786905	0.07322395	1.3786905	280.3246		14.888367	-0.018212	-0.00014591	0.00075972	NaN	26.115	208	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19005	+		163	8487	104	106							-0.062171496552878125
ADARDDLE	8	Unmodified						0	0	0			REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	REV__ENST00000544432.5_1_12:6572000-6579752:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	904.400666	903.393389	2.5813	0.0023346	-11.366	-0.010279	-8.7843	-0.0079445	904.3906043831673	25.974	0.14482	25.962	25.865	26.01	-0.0116	405	130	1.3786905	0.07681215	1.377171	280.3246		15.61795	0.018212	0.00017236	-0.00075972	NaN	26.115	205	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17638	+		164	8487	104	106							-0.062171496552878125
ADAVTEHA	8	Unmodified	_ADAVTEHA_					0	0	0			REV__ENST00000402157.6_1_11:8684787-8693411:-|nuORF	REV__ENST00000402157.6_1_11:8684787-8693411:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.3737228972	1	813.373723	812.366446	2.1074	0.0017141	3.3432	0.0027192	5.4506	0.0044333	813.3768450280231	22.573	0.024147	22.573	22.573	22.597	0	585	70	1.2711272	0.04134488	1.2711272	258.88818	0	8.420624						63	2	2	NaN	NaN	NaN	0.84455	1	4916	4916		2.7852	0	1	8070.1	+		165	12039	105	107	122	122					-0.04724213475810757
ADAVTEHA	8	Unmodified						0	0	0			REV__ENST00000402157.6_1_11:8684787-8693411:-|nuORF	REV__ENST00000402157.6_1_11:8684787-8693411:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	813.373723	812.366446	2.1074	0.0017141	3.3432	0.0027192	5.4506	0.0044333	813.3768450280231	22.573	0.024147	22.573	22.573	22.597	0	585	70	1.2711272	0.04134488	1.2711272	258.88818		8.420624	0	0	0	NaN	2.7852	63	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8070.1	+		166	12039	105	107							-0.04724213475810757
ADAVVAEQAF	10	Unmodified	_ADAVVAEQAF_					0	0	0			REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.75346407945	2	510.753464	1019.49238	1.3377	0.00068322	-2.5368	-0.0012957	-1.1991	-0.00061246	510.7518983591604	25.057	0.0965	25.045	25.021	25.117	-0.012011	1326	40	0.8209676	0.02401328	0.81944823	333.27383	0	9.74823						116	5	3	NaN	NaN	NaN	0.039609	1	9154	9154		55.592	7.5894	1	13632	+		167	10203	106	108	123	123					-0.016591266903787982
ADAVVAEQAF	10	Unmodified						0	0	0			REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.753464	1019.49238	1.3377	0.00068322	-2.5368	-0.0012957	-1.1991	-0.00061246	510.7518983591604	25.057	0.0965	25.045	25.021	25.117	-0.012011	1326	40	0.8209676	0.02401328	0.81944823	333.27383		9.74823	-0.0061172	-9.621E-05	0.00016377	NaN	55.592	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13632	+		168	10203	106	108							-0.016591266903787982
ADCLNDTYT	9	Unmodified	_ADCLNDTYT_					0	0	0		ENST00000278980.10_1_20:31290564-31290831:-|nuORF	ENST00000278980.10_1_20:31290564-31290831:-|nuORF	ENST00000278980.10_1_20:31290564-31290831:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.20548943160003	2	508.205489	1014.39643	1.8412	0.00093572	-2.7757	-0.0014106	-0.93453	-0.00047493	508.20424144219345	14.261	0.12013	14.261	14.189	14.309	0	1227	37	0.88180584	0.022085905	0.88180584	357.99518	0	8.966431						79	6	2	NaN	NaN	NaN	0.47587	1	9141	9141		10.605	0.99332	1	5695.9			169	6358	107	109	124	124					-0.11019642592771106
ADDAFVEPTM	10	Unmodified	_ADDAFVEPTM_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.4663026534	1	1095.4663	1094.45903	2.4258	0.0026574	3.7512	0.0041093	6.177	0.0067667	1095.4716816222679	26.07	0.16895	26.059	25.962	26.131	-0.011137	144	100	1.533442	0.05840659	1.5319226	310.97168	0	11.844482						439	8	4	NaN	NaN	NaN	0.29898	1	12258	12258		27.789	1.0573	1	78281			170	3883	108	110	125	125					-0.0844249652459439
ADDIDIEAM	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADDIDIEAM_					1	0	0		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000493853.1_1_20:34328703-34329397:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.4346681739999	1	1034.43467	1033.42739	1.4335	0.0014829	-0.74523	-0.00077089	0.68828	0.00071198	1034.4344426447856	32.152	0.24131	32.152	32.08	32.321	0	195	166	1.5033154	0.09760296	1.5033154	305.0864	0	19.80777						480	11	4	NaN	NaN	NaN	0.055351	1	9905	9905		44.638	30.597	1	86318			171	2690	109	111	126	126					-0.08798489278547095
ADDIDIEAM	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADDIDIEAM(Oxidation (M))_		ADDIDIEAM(1)		ADDIDIEAM(58)	1	0	1		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000493853.1_1_20:34328703-34329397:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.4295827961	1	1050.42958	1049.42231	2.2466	0.0023599	-0.27109	-0.00028476	1.9755	0.0020751	1050.4301233502138	26.746	0.21767	26.746	26.698	26.915	0	186	127	1.5086359	0.07449746	1.5086359	306.10464	0	15.115662						542	10	4	NaN	NaN	NaN	0.030669	1	10592	10592		58.235	28.637	1	110180			172	2690	109	112	127	127		307			-0.10042793141178663
ADDIDIEAM	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADDIDIEAM(Oxidation (M))_		ADDIDIEAM(1)		ADDIDIEAM(58)	1	0	1		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000493853.1_1_20:34328703-34329397:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.4295827961	1	1050.42958	1049.42231	1.511	0.0015872	-0.29543	-0.00031033	1.2156	0.0012769	1050.4296106480786	26.746	0.21719	26.735	26.687	26.904	-0.010645	180	136	1.5121819	0.07981455	1.5106624	306.82416	0	16.194489						496	10	4	NaN	NaN	NaN	0.030669	1	10373	10373		58.235	32.121	1	102520			173	2690	109	112	128	128		307			-0.10042793141178663
ADDLISSQE	9	Unmodified	_ADDLISSQE_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.22473642975	2	489.224736	976.43492	1.4436	0.00070626	-1.3411	-0.00065608	0.10258	5.0187E-05	489.22426774856206	14.597	0.11993	14.597	14.501	14.621	0	1353	34	0.8043377	0.020334303	0.8043377	326.71454	0	8.259613						80	6	2	NaN	NaN	NaN	0.46215	1	7784	7784		11.17	2.2084	1	6951.2	+		174	10371	110	113	129	129					-0.05424013686604212
ADDVETFSI	9	Unmodified	_ADDVETFSI_					0	0	0			REV__ENSG00000158158|ENST00000377075|CNNM4	REV__ENSG00000158158|ENST00000377075|CNNM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4520327977001	1	996.452033	995.444756	1.8553	0.0018487	-0.6739	-0.00067151	1.1814	0.0011772	996.4518734492099	24.212	0.096529	24.199	24.175	24.272	-0.012749	279	43	1.4535767	0.024911642	1.4520572	295.14047	0	5.0581665						90	5	2	NaN	NaN	NaN	0.45297	1	8225	8225		11.548	0.94349	1	6756.7	+		175	10160	111	114	130	130					-0.053148256812278305
ADFCQLHSCTL	11	Unmodified	_ADFCQLHSCTL_					0	0	0			REV__ENSG00000033800|ENST00000249636|PIAS1	REV__ENSG00000033800|ENST00000249636|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.18285266543336	3	413.182853	1236.52673	1.072	0.00044293	-4.3077	-0.0017799	-3.2357	-0.0013369	413.515440633786	26.77	0.096529	26.759	26.735	26.832	-0.010645	1488	40	0.7209441	0.02414906	0.71942466	437.97174	0	14.670471						104	5	3	NaN	NaN	NaN	0.74794	1	16701	16701		1.6806	0	1	8281.6	+		176	8447	112	115	131	131					-0.08207369865431247
ADFFETHSD	9	Unmodified	_ADFFETHSD_					0	0	0			REV__ENST00000583167.5_1_17:45892556-45892844:-|nuORF	REV__ENST00000583167.5_1_17:45892556-45892844:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.71707857315	2	534.717079	1067.4196	1.6093	0.00086053	7.9969	0.0042761	9.6062	0.0051366	534.7216420664271	24.261	0.072386	24.261	24.213	24.285	0	1278	79	0.85049206	0.04794085	0.85049206	345.0527	0	19.450073						134	4	3	NaN	NaN	NaN	0.55027	1	11428	11428		7.5404	2.3515	1	19554	+		177	8365	113	116	132	132					-0.11140880483799265
ADFFETHSD	9	Unmodified						0	0	0			REV__ENST00000583167.5_1_17:45892556-45892844:-|nuORF	REV__ENST00000583167.5_1_17:45892556-45892844:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.717079	1067.4196	1.6093	0.00086053	7.9969	0.0042761	9.6062	0.0051366	534.7216420664271	24.261	0.072386	24.261	24.213	24.285	0	1278	79	0.85049206	0.04794085	0.85049206	345.0527		19.450073	0.0065195	-0.00073071	0.0016816	NaN	7.5404	134	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19554	+		178	8365	113	116							-0.11140880483799265
ADGASSGG	8	Unmodified	_ADGASSGG_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21549679-21554039:+|nuORF;ENST00000554514.1_1_14:21549058-21555515:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.2474597511002	1	621.24746	620.240183	1.3562	0.00084253	3.5997	0.0022363	4.9558	0.0030788	621.2498492974873	46.054	0.047897	46.054	46.03	46.078	0	702	49	1.2008407	0.028898835	1.2008407	245.82896	0	5.915985						58	3	2	NaN	NaN	NaN	0.84945	1	1151	1151		0	0	1	4653			179	4427	114	117	133	133					-0.0851271998106995
ADHIQLIVP	9	Unmodified	_ADHIQLIVP_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.29001676125006	2	503.290017	1004.56548	1.4973	0.00075357	-0.26525	-0.0001335	1.232	0.00062008	503.29000264551934	25.201	0.21711	25.189	25.117	25.334	-0.012011	1296	70	0.8394264	0.042416096	0.83790696	340.83463	0	17.22232						204	10	2	NaN	NaN	NaN	0.14301	1	8603	8603		29.598	4.6373	1	25019			180	1227	115	118	134	134					0.06338046822907017
ADINDNPPTF	10	Unmodified	_ADINDNPPTF_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	ENSG00000253767|ENST00000398604|PCDHGA8	ENSG00000253767|ENST00000398604|PCDHGA8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2538282201999	2	552.253828	1102.4931	1.0336	0.00057081	-2.5277	-0.0013959	-1.4941	-0.00082511	552.2526897579182	31.477	0.024126	31.477	31.477	31.501	0	1311	25	0.83019954	0.014766991	0.83019954	336.68335	0	5.988678						24	2	2	NaN	NaN	NaN	0.77024	1	12929	12929		2.8895	0.42796	1	1535.2			181	6113	116	119	135	135					-0.05404332041348425
ADKMDMSL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADKMDMSL_					1	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4114303114	1	952.41143	951.404154	1.8518	0.0017637	-0.041087	-3.9131E-05	1.8107	0.0017246	952.4116235109889	24.743	0.2413	24.743	24.671	24.912	0	294	133	1.4446791	0.07840216	1.4446791	293.5193	0	15.929199						711	11	5	NaN	NaN	NaN	0.12977	1	7109	7109		58.398	18.939	1	225110			182	5318	117	120	136	136					-0.07349206596870772
ADKMDMSL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))ADKM(Oxidation (M))DMSL_		ADKM(0.5)DM(0.5)SL		ADKM(0)DM(0)SL	1	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4063449335	1	968.406345	967.399068	1.8834	0.0018239	-1.0832	-0.0010489	0.80024	0.00077495	968.4060026598548	20.429	0.33685	20.429	20.381	20.718	0	309	85	1.435777	0.049876332	1.435777	291.64175	0	10.131134						723	15	5	NaN	NaN	NaN	0.31535	1	7530	7530		40.957	8.5041	2	179760			183	5318	117	121	137	137		554;555			-0.08593510459479603
ADNQHYYCDSL	11	Unmodified	_ADNQHYYCDSL_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000603658.1_1_10:122663582-122664949:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.51191490120004	3	443.511915	1327.51392	0.81257	0.00036039	2.4007	0.0010647	3.2133	0.0014251	443.51257330088845	35.143	0.16894	35.143	35.094	35.263	-4.5776E-05	1452	31	0.74322224	0.018552959	0.7417028	451.16428	0	11.26239						117	8	3	NaN	NaN	NaN	0.7072	1	18351	18351		4.9007	3.0505	1	10063			184	2245	118	122	138	138					-0.13674109723956462
ADPTFLAIA	9	Unmodified	_ADPTFLAIA_					0	0	0			REV__ENSG00000160113|ENST00000291442|NR2F6	REV__ENSG00000160113|ENST00000291442|NR2F6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4931097514	1	918.49311	917.485833	1.2971	0.0011914	-1.5679	-0.0014401	-0.27085	-0.00024878	918.4918105251933	27.615	0.12064	27.605	27.557	27.677	-0.009552	309	55	1.435777	0.032060027	1.4342575	291.86447	0	6.517151						112	6	2	NaN	NaN	NaN	0.12945	1	6239	6239		31.561	1.9627	1	7569.1	+		185	10194	119	123	139	139					0.023789801488987905
ADPTFLAIA	9	Unmodified						0	0	0			REV__ENSG00000160113|ENST00000291442|NR2F6	REV__ENSG00000160113|ENST00000291442|NR2F6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	918.49311	917.485833	1.5053	0.0013826	-1.1755	-0.0010797	0.32976	0.00030289	918.4919034054114	27.591	0.14478	27.591	27.543	27.688	0	312	64	1.433996	0.03741324	1.433996	291.5024		7.605377	-0.0068787	0.00018966	-0.00013079	NaN	31.561	109	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8295.8	+		186	10194	119	123							0.023789801488987905
ADPTFLAIA	9	Unmodified						0	0	0			REV__ENSG00000160113|ENST00000291442|NR2F6	REV__ENSG00000160113|ENST00000291442|NR2F6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	918.49311	917.485833	1.2971	0.0011914	-1.5679	-0.0014401	-0.27085	-0.00024878	918.4918105251933	27.615	0.12064	27.605	27.557	27.677	-0.009552	309	55	1.435777	0.032060027	1.4342575	291.86447		6.517151	0.0068787	-0.00017079	0.00013079	NaN	31.561	112	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7569.1	+		187	10194	119	123							0.023789801488987905
ADRNGKGG	8	Unmodified	_ADRNGKGG_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.3852906365001	1	774.385291	773.378014	0.97232	0.00075295	1.2887	0.00099796	2.261	0.0017509	774.3867914459355	32.151	0.14478	32.148	32.123	32.268	-0.0037613	558	94	1.2873057	0.055731535	1.2857863	262.4029	0	11.360275						245	7	2	NaN	NaN	NaN	0.83582	1	4329	4329		4.4131	0.3594	1	24568	+		188	9886	120	124	140	140					-0.017739716618052626
ADRNGKGG	8	Unmodified						0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	774.385291	773.378014	0.97232	0.00075295	1.2887	0.00099796	2.261	0.0017509	774.3867914459355	32.151	0.14478	32.148	32.123	32.268	-0.0037613	558	94	1.2873057	0.055731535	1.2857863	262.4029		11.360275	-0.0024194	0.00023532	0.0001387	NaN	4.4131	245	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24568	+		189	9886	120	124							-0.017739716618052626
ADSFHYHTLEE	11	Unmodified	_ADSFHYHTLEE_					0	0	0		ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.19832471399997	3	450.198325	1347.57314	1.4007	0.00063059	-3.6546	-0.0016453	-2.2539	-0.0010147	450.197203087695	24.55	0.024036	24.538	24.514	24.538	-0.012394	1407	37	0.77102906	0.022227407	0.7695096	467.97247	0	13.490814						43	2	2	NaN	NaN	NaN	0.76488	1	18642	18642		0.9877	0	1	5102.4			190	1512	121	125	141	141					-0.08673890438149101
ADTCLFHFI	9	Unmodified	_ADTCLFHFI_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5026285802	1	1066.50263	1065.49535	1.5285	0.0016302	-2.3197	-0.0024739	-0.79116	-0.00084377	1066.4999524990885	32.418	0.14476	32.418	32.37	32.514	0	120	70	1.5476005	0.04068172	1.5476005	313.94916	0	8.252777						231	7	4	NaN	NaN	NaN	0.17818	1	11359	11359		26.732	8.7619	1	23780			191	7845	122	126	142	142					-0.0347757483721125
ADTCLFHFI	9	Unmodified	_ADTCLFHFI_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|103|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5026285802	1	1066.50263	1065.49535	0.74521	0.00079477	-1.9678	-0.0020986	-1.2226	-0.0013039	1066.500673339183	32.393	0.16898	32.389	32.365	32.534	-0.0037613	114	70	1.5511382	0.04067743	1.5496187	314.66684	0	8.251892						203	8	2	NaN	NaN	NaN	0.17818	1	11097	11097		26.732	4.6052	1	24416			192	7845	122	126	143	143					-0.0347757483721125
ADTIQHFC	8	Unmodified	_ADTIQHFC_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.70800233079996	2	467.708002	933.401452	0.5001	0.0002339	-5.556	-0.0025986	-5.0559	-0.0023647	467.7062630404877	35.023	0.072395	35.023	34.999	35.072	0	1386	37	0.78399014	0.022210538	0.78399014	318.6534	0	9.027496						59	4	2	NaN	NaN	NaN	0.80071	1	6673	6673		9.1232	3.6573	1	4830.8			193	5398	123	127	144	144					-0.06791293939511434
ADTPIVAL	8	Unmodified	_ADTPIVAL_					0	0	0			REV__nc|ENSG00000113108|O95704-5|APBB3	REV__nc|ENSG00000113108|O95704-5|APBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.4559959636	1	799.455996	798.448719	2.1566	0.0017241	-2.2557	-0.0018033	-0.099109	-7.9233E-05	799.4541187733107	24.309	0.048285	24.296	24.272	24.32	-0.012749	495	40	1.3249949	0.023306489	1.3234755	269.93753	0	4.748169						52	3	2	NaN	NaN	NaN	0.78264	1	4644	4644		11.548	2.4253	1	3877.1	+		194	13107	124	128	145	145					0.0414330860313612
ADVFVQWM	8	Unmodified	_ADVFVQWM_					0	0	0		nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM	nc|ENSG00000211899|P01871-1|IGHM	nc|ENSG00000211899|P01871-1|IGHM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4655147924001	1	995.465515	994.458238	1.3528	0.0013467	6.9469	0.0069154	8.2998	0.0082621	995.4758119242339	30.922	0.048235	30.922	30.897	30.946	0	228	52	1.4837929	0.03018403	1.4837929	301.27975	0	6.1288147						99	3	3	NaN	NaN	NaN	0.81251	1	8369	8369		7.5404	1.45	1	6274.9			195	8032	125	129	146	146					-0.039212463829812805
ADVLFEVLF	9	Unmodified	_ADVLFEVLF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000467077.1_1_3:142074330-142089377:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5662746945	1	1052.56627	1051.559	1.8972	0.0019969	-10.405	-0.010952	-8.5083	-0.0089556	1052.554951340026	32.563	0.072365	32.563	32.539	32.611	0	216	121	1.4908947	0.07091987	1.4908947	302.497	0	14.389374						146	4	2	NaN	NaN	NaN	0.36492	1	10696	10696		15.175	1.1338	1	21338			196	1944	126	130	147	147					0.035281088715237274
ADVPKGSV	8	Unmodified	_ADVPKGSV_					0	0	0			REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.4199448083001	1	772.419945	771.412668	1.5623	0.0012068	4.6396	0.0035837	6.2019	0.0047905	772.4228049902903	28.87	0.072384	28.87	28.87	28.943	0	540	88	1.2980826	0.05211377	1.2980826	264.6114	0	10.6232605						108	4	2	NaN	NaN	NaN	0.84512	1	4373	4373		2.4615	0	1	9381.9	+		197	13538	127	131	148	148					0.017818514262899043
ADVPKGSV	8	Unmodified						0	0	0			REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	772.419945	771.412668	1.5623	0.0012068	4.6396	0.0035837	6.2019	0.0047905	772.4228049902903	28.87	0.072384	28.87	28.87	28.943	0	540	88	1.2980826	0.05211377	1.2980826	264.6114		10.6232605	-0.007494	-0.00011292	0.00075972	NaN	2.4615	108	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9381.9	+		198	13538	127	131							0.017818514262899043
ADVPKGSV	8	Unmodified						0	0	0			REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	772.419945	771.412668	1.4355	0.0011088	4.9339	0.0038111	6.3695	0.0049199	772.4240957309755	28.894	0.072439	28.885	28.861	28.933	-0.0083485	540	88	1.2980826	0.05211377	1.2965631	264.6114		10.6232605	0.007494	0.00011443	-0.00075972	NaN	2.4615	120	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9906.7	+		199	13538	127	131							0.017818514262899043
ADVTAGAV	8	Unmodified	_ADVTAGAV_					0	0	0			REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3620955784	1	703.362096	702.354819	1.2433	0.00087448	-4.3599	-0.0030666	-3.1166	-0.0021921	703.3589498800005	55.004	0.072029	55.004	55.004	55.076	0	555	124	1.2891023	0.07362306	1.2891023	263.2319	0	15.033661						190	4	2	NaN	NaN	NaN	0.84455	1	3252	3252		2.7852	0	1	22142	+		200	10270	128	132	149	149					-0.008264104991440036
ADYKPNLDFF	10	Unmodified	_ADYKPNLDFF_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.29549606965	2	615.295496	1228.57644	0.77856	0.00047904	6.3674	0.0039178	7.146	0.0043969	615.2992930772824	29.377	0.096491	29.377	29.329	29.425	0	1149	58	0.92958635	0.034873188	0.92958635	376.51114	0	14.124725						150	5	3	NaN	NaN	NaN	0.58645	1	17204	17204		15.822	2.8191	1	22471	+		201	8595	129	133	150	150					-0.02870595593503822
ADYKPNLDFF	10	Unmodified						0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.295496	1228.57644	0.77856	0.00047904	6.3674	0.0039178	7.146	0.0043969	615.2992930772824	29.377	0.096491	29.377	29.329	29.425	0	1149	58	0.92958635	0.034873188	0.92958635	376.51114		14.124725	0	0	0	NaN	15.822	150	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22471	+		202	8595	129	133							-0.02870595593503822
AEAEMPAQIY	10	Unmodified	_AEAEMPAQIY_					0	0	0			REV__nc|ENSG00000134899|P28715-2|ERCC5	REV__nc|ENSG00000134899|P28715-2|ERCC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7604318318001	2	561.760432	1121.50631	2.1986	0.0012351	7.195	0.0040419	9.3936	0.005277	562.2658383531046	18.125	0.1199	18.125	18.053	18.173	0	1251	64	0.8670771	0.03866917	0.8670771	351.56522	0	15.678833						118	6	2	NaN	NaN	NaN	0.77513	1	13736	13736		1.7022	0.37103	1	8581.1	+		203	9599	130	134	151	151					-0.04958217253579278
AEAEMPAQIY	10	Unmodified						0	0	0			REV__nc|ENSG00000134899|P28715-2|ERCC5	REV__nc|ENSG00000134899|P28715-2|ERCC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.760432	1121.50631	2.1986	0.0012351	7.195	0.0040419	9.3936	0.005277	562.2658383531046	18.125	0.1199	18.125	18.053	18.173	0	1251	64	0.8670771	0.03866917	0.8670771	351.56522		15.678833	0	0	0	NaN	1.7022	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8581.1	+		204	9599	130	134							-0.04958217253579278
AEAHNKYS	8	Unmodified	_AEAHNKYS_					0	0	0		ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2170487834	2	460.217049	918.419545	1.0018	0.00046105	-5.5865	-0.002571	-4.5847	-0.0021099	460.2158763682588	35.53	0.38589	35.53	35.458	35.844	0	1416	79	0.76547134	0.048180282	0.76547134	311.20004	0	19.587555						1299	17	8	NaN	NaN	NaN	0.78264	1	6380	6380		11.548	2.4253	1	907350			205	7313	131	135	152	152					-0.04292835693138386
AEAHNKYS	8	Unmodified	_AEAHNKYS_					0	0	0		ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2170487834	2	460.217049	918.419545	0.63102	0.00029041	-4.7876	-0.0022033	-4.1565	-0.0019129	460.21437468351996	37.241	0.12059	37.241	37.145	37.265	0	1428	43	0.7580582	0.025948882	0.7580582	308.18622	0	10.549438						66	6	2	NaN	NaN	NaN	0.80692	1	6381	6381		8.2903	0.74991	1	3884.7			206	7313	131	135	153	153					-0.04292835693138386
AEALYTETR	9	Unmodified	_AEALYTETR_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.26419594125	2	527.264196	1052.51384	1.6002	0.00084374	6.1224	0.0032281	7.7226	0.0040719	527.2666330934178	23.971	0.07238	23.971	23.971	24.044	0	1290	40	0.84311575	0.0239743	0.84311575	342.1218	0	9.728363						46	4	2	NaN	NaN	NaN	0.53317	1	10738	10738		8.2448	0.65722	1	3089.8			207	2567	132	136	154	154					-0.01031741661677188
AEAQLRFIQAW	11	Unmodified	_AEAQLRFIQAW_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.8565864802501	2	666.856586	1331.69862	1.3613	0.00090781	-1.0974	-0.00073183	0.2639	0.00017598	666.8557028960033	27.109	0.096525	27.109	27.084	27.181	0	1164	43	0.9204082	0.025705755	0.9204082	372.4728	0	10.402649						153	5	4	NaN	NaN	NaN	0.03394	1	19283	19283		54.277	36.307	1	20246			208	3695	133	137	155	155					0.046038662087539706
AEAQLRFIQAW	11	Unmodified	_AEAQLRFIQAW_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.8565864802501	2	666.856586	1331.69862	1.3209	0.00088086	-1.6296	-0.0010867	-0.30864	-0.00020582	666.8548345418576	27.132	0.1448	27.122	27.098	27.242	-0.010126	1167	43	0.91857195	0.025705755	0.9170525	371.72974	0	10.402649						153	7	3	NaN	NaN	NaN	0.00427	1	18424	18424		74.865	47.818	1	18426			209	3695	133	137	156	156					0.046038662087539706
AEATEITGL	9	Unmodified	_AEATEITGL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4622035535	1	904.462204	903.454927	1.9572	0.0017702	-2.2307	-0.0020176	-0.27353	-0.0002474	904.4611043775755	22.067	0.16887	22.067	22.019	22.187	0	384	67	1.3911947	0.03929293	1.3911947	282.8667	0	7.989319						194	8	2	NaN	NaN	NaN	0.094712	1	6142	6142		36.586	2.1477	1	22532			210	5930	134	138	157	157					-0.0006621795599812685
AEATEITGL	9	Unmodified						0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	904.462204	903.454927	1.6832	0.0015224	-2.1067	-0.0019054	-0.42346	-0.000383	904.4606958488001	22.066	0.16858	22.053	21.956	22.125	-0.013731	381	64	1.3929803	0.037500978	1.3914609	283.22977		7.624939	-0.0070184	4.5869E-05	0.00013306	NaN	36.586	176	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16246			211	5930	134	138							-0.0006621795599812685
AEDIPELLL	9	Unmodified	_AEDIPELLL_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5561039387002	1	1012.5561	1011.54883	1.1003	0.0011141	-0.88623	-0.00089736	0.21407	0.00021676	1012.5550810379583	35.096	0.12067	35.096	35.072	35.192	0	234	85	1.4802408	0.049749374	1.4802408	300.48914	0	10.099121						320	6	4	NaN	NaN	NaN	0.014046	1	9053	9053		80.639	16.089	1	53751			212	2043	135	139	158	158					0.04351501146300052
AEDKENYKKF	10	Unmodified	_AEDKENYKKF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.5470653510333	3	424.547065	1270.61937	1.8261	0.00077528	-1.788	-0.0007591	0.038128	1.6187E-05	424.8802637171617	11.62	0.11998	11.62	11.548	11.668	0	1446	34	0.7469324	0.020404935	0.7469324	453.6253	0	12.392303						92	6	2	NaN	NaN	NaN	0.28195	1	18242	18242		18.924	10.571	1	8635.3			213	1139;909	136	140	159	159					-0.005118255360457624
AEDKENYKKFY	11	Unmodified	_AEDKENYKKFY_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.90150819713335	3	478.901508	1433.6827	2.2903	0.0010968	-4.4559	-0.0021339	-2.1656	-0.0010371	478.8988793858899	13.709	0.096098	13.709	13.709	13.805	0	1380	34	0.7876915	0.020354152	0.7876915	477.79443	0	12.346344						57	5	2	NaN	NaN	NaN	0.76404	1	20296	20296		3.0365	1.6669	1	4503.2			214	1139;909	137	141	160	160					-0.016798848188045667
AEDLNSRVSYW	11	Unmodified	_AEDLNSRVSYW_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.3174911095001	2	670.317491	1338.62043	1.6406	0.0010997	-0.52569	-0.00035238	1.1149	0.00074732	670.8182698515493	21.85	0.12052	21.85	21.826	21.946	0	1119	46	0.9479278	0.02749288	0.9479278	383.58914	0	11.125305						171	6	3	NaN	NaN	NaN	0.10311	1	19386	19386		39.34	27.601	1	16190			215	4492	138	142	161	161					-0.03533611167131312
AEDLNSRVSYW	11	Unmodified	_AEDLNSRVSYW_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3174911095001	2	670.317491	1338.62043	1.3058	0.00087532	0.66369	0.00044488	1.9695	0.0013202	670.3169506367989	21.85	0.14454	21.836	21.812	21.956	-0.013895	1119	52	0.9479278	0.031158626	0.94640833	383.58914	0	12.608673						154	7	3	NaN	NaN	NaN	0.52491	1	18522	18522		17.582	4.1187	1	13259			216	4492	138	142	162	162					-0.03533611167131312
AEDLNTRVAYW	11	Unmodified	_AEDLNTRVAYW_					0	0	0		ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENSG00000134970|ENST00000456936|TMED7	ENSG00000134970|ENST00000456936|TMED7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3278588305501	2	669.327859	1336.64116	1.9089	0.0012777	-2.7385	-0.0018329	-0.82962	-0.00055529	669.3258783453691	23.031	0.07213	23.031	22.983	23.055	0	1107	46	0.9552588	0.02748698	0.9552588	386.56158	0	11.123047						112	4	3	NaN	NaN	NaN	0.14074	1	19356	19356		45.55	32.087	1	21048			217	2909	139	143	163	163					-0.01369020787478803
AEDLNTRVAYW	11	Unmodified	_AEDLNTRVAYW_					0	0	0		ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENSG00000134970|ENST00000456936|TMED7	ENSG00000134970|ENST00000456936|TMED7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3278588305501	2	669.327859	1336.64116	1.5858	0.0010614	-3.8697	-0.0025901	-2.2839	-0.0015287	669.3258791825403	23.055	0.07221	23.041	23.017	23.09	-0.013294	1107	49	0.9552588	0.029317856	0.9537394	386.56158	0	11.863953						158	4	4	NaN	NaN	NaN	0.0075391	1	18491	18491		97.213	71.412	1	22573			218	2909	139	143	164	164					-0.01369020787478803
AEELERQGY	9	Unmodified	_AEELERQGY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7592777388501	2	547.759278	1093.504	1.1631	0.00063709	-0.16821	-9.2136E-05	0.99488	0.00054496	547.759114104835	14.501	0.11988	14.501	14.429	14.549	0	1263	43	0.85970795	0.025797546	0.85970795	348.68573	0	10.463135						116	6	3	NaN	NaN	NaN	0.084037	1	12532	12532		38.131	12.33	1	10116			219	1712	140	144	165	165					-0.03900929667042874
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.8695912375666	3	370.869591	1109.58694	1.8846	0.00069892	-2.8094	-0.0010419	-0.92489	-0.00034301	370.8684267415844	18.916	0.12006	18.916	18.892	19.012	0	1485	34	0.72280174	0.020433784	0.72280174	439.65347	0	12.429108						76	6	2	NaN	NaN	NaN	0.16171	1	13268	13268		24.4	10.937	1	7604.2			220	170;3312	141	145	166	166					0.03653431851603273
AEELFARKF	9	Unmodified	_AEELFARKF_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.8695912375666	3	370.869591	1109.58694	1.9083	0.00070775	-0.39261	-0.00014561	1.5157	0.00056214	370.8699487585339	19.01	0.096073	18.996	18.948	19.044	-0.014059	1488	31	0.7209441	0.018575132	0.71942466	438.52353	0	11.298584						79	5	2	NaN	NaN	NaN	0.23112	1	12889	12889		15.822	6.8803	1	7884.3			221	170;3312	141	145	167	167					0.03653431851603273
AEELQALNQE	10	Unmodified	_AEELQALNQE_					0	0	0			REV__ENST00000567372.1_1_18:65945123-65945423:-|nuORF	REV__ENST00000567372.1_1_18:65945123-65945423:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.77766745725	2	572.777667	1143.54078	2.2187	0.0012708	0.25383	0.00014539	2.4725	0.0014162	572.7780631488845	25.756	0.072414	25.745	25.745	25.817	-0.0116	1209	37	0.892844	0.022069216	0.8913246	361.928	0	8.946106						49	4	2	NaN	NaN	NaN	0.71559	1	14096	14096		6.9844	0.73415	1	4440.9	+		222	12808	142	146	168	168					-0.02524677841142875
AEEYGCFPC	9	Unmodified	_AEEYGCFPC_					0	0	0			REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.6858782927	2	509.685878	1017.3572	1.5699	0.00080014	-3.0188	-0.0015386	-1.4489	-0.0007385	510.18503185228724	21.224	0.072233	21.21	21.186	21.258	-0.014004	1359	37	0.8006399	0.022186518	0.7991205	325.03082	0	9.0069275						62	4	2	NaN	NaN	NaN	0.66196	1	9077	9077		2.4615	0	1	4153.3	+		223	10455	143	147	169	169					-0.1507806614799847
AEEYILLL	8	Unmodified	_AEEYILLL_					0	0	0		RGS22|p.L771F|1|0.17|ENSG00000132554|chr8:100008425-100008425|G/A|missense_variant;ENST00000519421.1_1_8:101015243-101020719:-|nuORF;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	RGS22|p.L771F|1|0.17|ENSG00000132554|chr8:100008425-100008425|G/A|missense_variant	RGS22|p.L771F|1|0.17|ENSG00000132554|chr8:100008425-100008425|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.5397255930003	1	963.539726	962.532449	1.4683	0.0014148	1.1615	0.0011191	2.6298	0.0025339	963.5410901936472	34.662	0.14468	34.662	34.614	34.758	0	240	55	1.4766881	0.03197825	1.4766881	299.9731	0	6.4960327						179	7	3	NaN	NaN	NaN	0.57691	1	7411	7411		26.732	0	1	20290			224	2772	144	148	170	170					0.049684199802072726
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3136888228	2	615.313689	1228.61282	1.5117	0.00093019	-7.2388	-0.0044541	-5.7271	-0.0035239	615.3089015505543	28.653	0.36199	28.653	28.605	28.967	0	1128	112	0.9424274	0.06791097	0.9424274	381.7121	0	27.506042						933	16	4	NaN	NaN	NaN	0.00039182	1	17206	17206		91.973	41.658	1	565320			225	1101	145	149	171	171					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3136888228	2	615.313689	1228.61282	1.2732	0.00078341	-6.3804	-0.003926	-5.1073	-0.0031426	615.3096329677298	28.652	0.28958	28.644	28.62	28.909	-0.0083485	1128	118	0.9424274	0.0715819	0.94090796	381.7121	0	28.992859						796	13	4	NaN	NaN	NaN	0.0020454	1	16510	16510		85.824	46.785	1	537360			226	1101	145	149	172	172					0.007662813032311533
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000556757.5_1_14:90863574-90867886:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.80041427205	2	594.800414	1187.58628	1.2475	0.00074202	-1.5932	-0.00094766	-0.34572	-0.00020563	594.798950820477	28.918	0.14481	28.918	28.87	29.015	0	1167	76	0.91857195	0.04592049	0.91857195	372.19266	0	18.606323						243	7	3	NaN	NaN	NaN	0.075094	1	16081	16081		49.394	19.688	1	59022			227	3455	146	150	173	173					-1.4075880926611717E-05
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.74563904735	2	515.745639	1029.47673	2.0128	0.0010381	0.96238	0.00049634	2.9752	0.0015345	515.7462900304182	22.597	0.193	22.597	22.549	22.742	0	1266	52	0.85786515	0.0313375	0.85786515	348.20746	0	12.719879						191	9	4	NaN	NaN	NaN	0.23112	1	9746	9746		23.334	4.2161	1	21641			228	5088	147	151	174	174					-0.036834132074318404
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.74563904735	2	515.745639	1029.47673	1.1627	0.00059967	2.1687	0.0011185	3.3314	0.0017182	515.7471306851844	22.597	0.14473	22.583	22.559	22.704	-0.01354	1266	67	0.85786515	0.04056537	0.8563457	348.20746	0	16.465485						210	7	4	NaN	NaN	NaN	0.23112	1	9547	9547		23.334	11.286	1	24934			229	5088	147	151	175	175					-0.036834132074318404
AEGDTEEDDGF	11	Unmodified	_AEGDTEEDDGF_					0	0	0		ENST00000480816.5_1_20:3781734-3783795:+|nuORF;nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	ENST00000480816.5_1_20:3781734-3783795:+|nuORF	ENST00000480816.5_1_20:3781734-3783795:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.7149298147	2	592.71493	1183.41531	2.5177	0.0014923	-8.3572	-0.0049535	-5.8396	-0.0034612	592.7113270873261	16.083	0.047937	16.07	16.07	16.118	-0.012611	1248	40	0.8689189	0.02393806	0.86739945	352.0882	0	9.699768						43	3	2	NaN	NaN	NaN	0.77278	1	15332	15332		1.5054	0.17424	1	2877.3			230	1309	148	152	176	176					-0.16906434488032573
AEGGKSGL	8	Unmodified	_AEGGKSGL_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.3729946157001	1	718.372995	717.365718	0.96977	0.00069665	7.1046	0.0051038	8.0744	0.0058004	718.3769410320906	26.987	0.16898	26.977	26.905	27.074	-0.010126	624	58	1.247731	0.03422022	1.2462115	254.68193	0	6.984894						227	8	3	NaN	NaN	NaN	0.80071	1	3480	3480		9.1232	0.83292	1	22078	+		231	11410	149	153	177	177					-0.004270081248478164
AEGIALVW	8	Unmodified	_AEGIALVW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4719803788	1	858.47198	857.464704	1.0998	0.00094413	0.28842	0.0002476	1.3882	0.0011917	858.4715870789645	31.235	0.048244	31.235	31.235	31.284	0	390	46	1.3876231	0.02679205	1.3876231	282.36743	0	5.451935						65	3	2	NaN	NaN	NaN	0.45125	1	5504	5504		33.698	5.0318	1	4731.3			232	5678;276	150	154	178	178					0.03027014840040465
AEGIALVW	8	Unmodified						0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	858.47198	857.464704	1.2424	0.0010665	1.6906	0.0014513	2.933	0.0025179	858.4722591405204	31.258	0.096558	31.253	31.205	31.302	-0.0050716	390	40	1.3876231	0.023217201	1.3861036	282.36743		4.724518	0.0090079	0.00052176	-0.00075972	NaN	33.698	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5172.9			233	5678;276	150	154							0.03027014840040465
AEGIHTGQFVY	11	Unmodified	_AEGIHTGQFVY_					0	0	0		ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8	ENST00000531767.1_1_8:146017155-146017514:-|nuORF	ENST00000531767.1_1_8:146017155-146017514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.2985700748501	2	611.29857	1220.58259	0.81485	0.00049811	-1.6862	-0.0010308	-0.87136	-0.00053266	611.2981253903388	20.525	0.096207	20.525	20.501	20.597	0	1161	49	0.9222442	0.029377997	0.9222442	373.56458	0	11.899872						147	5	3	NaN	NaN	NaN	0.47586	1	16995	16995		19.336	5.8734	1	16422			234	4089	151	155	179	179					-0.018880773619457614
AEGIHTGQFVY	11	Unmodified						0	0	0		ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8	ENST00000531767.1_1_8:146017155-146017514:-|nuORF	ENST00000531767.1_1_8:146017155-146017514:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.29857	1220.58259	0.79112	0.00048361	-2.2722	-0.001389	-1.4811	-0.00090537	611.2967306530642	20.549	0.072195	20.535	20.487	20.559	-0.014141	1164	58	0.9204082	0.034895778	0.91888875	372.82086		14.134888	0.005055	-0.00023613	-0.0016777	NaN	19.336	120	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12131			235	4089	151	155							-0.018880773619457614
AEGPADKLQL	10	Unmodified	_AEGPADKLQL_					0	0	0			REV__ENST00000578849.1_1_17:8192409-8192553:+|nuORF	REV__ENST00000578849.1_1_17:8192409-8192553:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2823886944001	2	521.282389	1040.55022	1.8635	0.0009714	-3.9052	-0.0020357	-2.0417	-0.0010643	521.2801096530679	18.94	0.19198	18.94	18.868	19.06	0	1299	61	0.8375814	0.036913514	0.8375814	339.92654	0	14.98111						227	9	3	NaN	NaN	NaN	0.5626	1	10237	10237		16.858	2.4333	1	26809	+		236	12860	152	156	180	180					0.031571352350511006
AEGPELDLIM	10	Unmodified	_AEGPELDLIM_					0	0	0			REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.5339882880999	1	1087.53399	1086.52671	1.1243	0.0012227	-3.0131	-0.0032769	-1.8889	-0.0020542	1087.5296118289223	27.228	0.12065	27.218	27.17	27.291	-0.010124	135	58	1.5387528	0.033620834	1.5372335	312.07706	0	6.818695						98	6	2	NaN	NaN	NaN	0.5917	1	11927	11927		15.463	2.893	1	8081.7	+		237	12293	153	157	181	181					-0.01309046593792118
AEGQHVIA	8	Unmodified	_AEGQHVIA_					0	0	0			REV__ENST00000536676.5_1_6:97372808-97372874:+|nuORF	REV__ENST00000536676.5_1_6:97372808-97372874:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.71668464264997	2	412.716685	823.418816	1.7991	0.00074253	-4.4024	-0.0018169	-2.6032	-0.0010744	412.7149771888562	16.206	0.07206	16.206	16.182	16.254	0	1419	31	0.76361835	0.018528879	0.76361835	310.9739	0	7.545624						45	4	2	NaN	NaN	NaN	0.8421	1	5067	5067		3.5698	0.78459	1	2733.2	+		238	12678	154	158	182	182					4.369657801817084E-05
AEGQPAPG	8	Unmodified	_AEGQPAPG_					0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3416944873001	1	726.341694	725.334418	1.3399	0.00097326	0.1429	0.0001038	1.4829	0.0010771	726.3412866681258	21.488	0.14456	21.488	21.464	21.609	0	636	79	1.2405256	0.046870112	1.2405256	253.15909	0	9.565002						174	7	3	NaN	NaN	NaN	0.063835	1	3688	3688		74.332	21.574	1	16205	+		239	8389	155	159	183	183					-0.03923581158949219
AEGQPAPG	8	Unmodified						0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	726.341694	725.334418	1.3399	0.00097326	0.1429	0.0001038	1.4829	0.0010771	726.3412866681258	21.488	0.14456	21.488	21.464	21.609	0	636	79	1.2405256	0.046870112	1.2405256	253.15909		9.565002	0.006982	-8.5477E-05	0.00075972	NaN	74.332	174	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16205	+		240	8389	155	159							-0.03923581158949219
AEGQPAPG	8	Unmodified						0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.341694	725.334418	1.4729	0.0010698	0.32061	0.00023287	1.7935	0.0013027	726.3418555456647	21.489	0.12055	21.475	21.45	21.571	-0.014006	636	73	1.2405256	0.043260098	1.2390062	253.15909		8.828278	-0.006982	4.3595E-05	-0.00075972	NaN	74.332	158	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18657	+		241	8389	155	159							-0.03923581158949219
AEGTHVIQR	9	Unmodified	_AEGTHVIQR_					0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.77252249984997	2	505.772522	1009.53049	2.2719	0.0011491	-2.109	-0.0010667	0.16287	8.2376E-05	505.77166201782205	11.98	0.48027	11.98	11.836	12.316	0	1290	97	0.84311575	0.059061587	0.84311575	342.30988	0	23.97934						946	21	5	NaN	NaN	NaN	0.011206	1	8963	8963		89.256	6.2955	1	621450	+		242	10594	156	160	184	184					0.02610804014943824
AEGTHVIQR	9	Unmodified	_AEGTHVIQR_					0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.77252249984997	2	505.772522	1009.53049	1.1161	0.0005645	-3.7557	-0.0018995	-2.6396	-0.001335	505.77183935258876	12.342	0.095914	12.333	12.333	12.429	-0.0088415	1290	34	0.84311575	0.020290375	0.8415963	342.30988	0	8.238007						76	5	2	NaN	NaN	NaN	0.12328	1	8792	8792		32.453	6.3378	1	8843.8	+		243	10594	156	160	185	185					0.02610804014943824
AEGTHVIQR	9	Unmodified						0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	505.772522	1009.53049	2.2719	0.0011491	-2.109	-0.0010667	0.16287	8.2376E-05	505.77166201782205	11.98	0.48027	11.98	11.836	12.316	0	1290	97	0.84311575	0.059061587	0.84311575	342.30988		23.97934	-0.17654	6.3288E-05	0.00075972	NaN	89.256	946	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621450	+		244	10594	156	160							0.02610804014943824
AEGTHVIQR	9	Unmodified						0	0	0			REV__ENSG00000170631|ENST00000394909|ZNF16	REV__ENSG00000170631|ENST00000394909|ZNF16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.772522	1009.53049	1.1161	0.0005645	-3.7557	-0.0018995	-2.6396	-0.001335	505.77183935258876	12.342	0.095914	12.333	12.333	12.429	-0.0088415	1290	34	0.84311575	0.020290375	0.8415963	342.30988		8.238007	0.17654	-0.0016024	-0.00075972	NaN	89.256	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8843.8	+		245	10594	156	160							0.02610804014943824
AEGVRNIKSMW	11	Unmodified	_AEGVRNIKSMW_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8347967931501	2	645.834797	1289.65504	2.4407	0.0015763	-1.9225	-0.0012416	0.51813	0.00033462	645.8335516436788	18.652	0.11988	18.652	18.628	18.748	0	1125	43	0.9442611	0.025672436	0.9442611	382.25357	0	10.39267						108	6	3	NaN	NaN	NaN	0.12028	1	18592	18592		37.743	26.572	1	9811			246	2342	157	161	186	186					0.021799334399702275
AEGVRNIKSMW	11	Unmodified	_AEGVRNIKSMW_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8347967931501	2	645.834797	1289.65504	2.1952	0.0014177	-2.9512	-0.001906	-0.75604	-0.00048828	645.8331631379974	18.794	0.16817	18.78	18.731	18.9	-0.014061	1125	34	0.9442611	0.020167947	0.94274163	382.25357	0	8.164337						107	8	2	NaN	NaN	NaN	0.48738	1	17763	17763		18.924	10.005	1	8931			247	2342	157	161	187	187					0.021799334399702275
AEGVRNIKSMW	11	Unmodified	_AEGVRNIKSMW_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.89229001763334	3	430.89229	1289.65504	1.4557	0.00062724	-0.16132	-6.9511E-05	1.2944	0.00055773	430.8925574449445	18.818	0.1441	18.804	18.731	18.876	-0.014059	1419	40	0.76361835	0.024091423	0.7620989	463.68546	0	14.628815						114	7	2	NaN	NaN	NaN	0.29813	1	17764	17764		15.993	1.034	1	10217			248	2342	157	161	188	188					0.021799334399702275
AEHDRMARQW	10	Unmodified	_AEHDRMARQW_					0	0	0		ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	ENST00000493707.1_1_3:23907959-23932094:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.87188892653336	3	433.871889	1298.59384	1.6309	0.00070758	-2.0853	-0.00090475	-0.45444	-0.00019717	433.8707785556151	12.798	0.09598	12.789	12.765	12.861	-0.00947	1497	28	0.71537006	0.016725838	0.7138506	434.35645	0	10.155518						42	5	2	NaN	NaN	NaN	0.74042	1	17917	17917		5.2847	4.1826	1	2820.4			249	4712	158	162	189	189					-0.04351578539467482
AEICETFTR	9	Unmodified	_AEICETFTR_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2527739752001	2	535.252774	1068.491	2.3062	0.0012344	-11.409	-0.0061066	-9.1027	-0.0048722	535.2472113365021	25.66	0.16887	25.66	25.515	25.684	0	1260	52	0.8615505	0.03132391	0.8615505	349.53488	0	12.708252						96	8	2	NaN	NaN	NaN	0.63698	1	11474	11474		3.9685	1.1833	1	6722.1			250	3541	159	163	190	190					-0.040510840507977264
AEICETFTR	9	Unmodified						0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.252774	1068.491	1.6923	0.00090581	-10.433	-0.0055841	-8.7404	-0.0046783	535.247474122008	25.684	0.096466	25.672	25.6	25.696	-0.0116	1260	64	0.8615505	0.038698435	0.8600311	349.53488		15.700134	0.006133	0.00039725	-0.00075972	NaN	3.9685	120	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11154			251	3541	159	163							-0.040510840507977264
AEIIKEDLW	9	Unmodified	_AEIIKEDLW_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.80041427205	2	558.800414	1115.58628	1.4581	0.00081479	-4.4958	-0.0025123	-3.0377	-0.0016975	558.797356913162	24.816	0.16893	24.816	24.791	24.96	0	1242	85	0.87260187	0.05152273	0.87260187	353.82816	0	20.891724						274	8	3	NaN	NaN	NaN	0.40649	1	13504	13504		13.463	0.89334	1	31542			252	5588	160	164	191	191					0.033105924118899566
AEIIKEDLW	9	Unmodified	_AEIIKEDLW_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.80041427205	2	558.800414	1115.58628	1.2846	0.00071782	-1.6633	-0.00092944	-0.3787	-0.00021162	558.7994598818992	24.84	0.12063	24.827	24.779	24.9	-0.012392	1245	85	0.87076044	0.051528275	0.869241	353.08148	0	20.893982						172	6	3	NaN	NaN	NaN	0.37272	1	13116	13116		14.854	3.6837	1	22199			253	5588	160	164	192	192					0.033105924118899566
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.3109491686	2	514.310949	1026.60735	1.6406	0.00084378	-4.4816	-0.0023049	-2.841	-0.0014612	514.3078328792617	24.502	0.048275	24.502	24.478	24.526	0	1269	40	0.8560222	0.023961365	0.8560222	347.47223	0	9.726257						57	3	3	NaN	NaN	NaN	0.51576	1	9643	9643		8.962	1.4216	1	6679.2			254	2724	161	165	193	193					0.09510602511409161
AEINNIIKI	9	Unmodified						0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.310949	1026.60735	1.3522	0.00069545	-6.2922	-0.0032361	-4.94	-0.0025407	514.3073083691129	24.526	0.024227	24.514	24.489	24.514	-0.012392	1269	34	0.8560222	0.020272791	0.85450274	347.47223		8.229034	0.0058101	-0.00068704	-0.00075972	NaN	8.962	54	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6773.7			255	2724	161	165							0.09510602511409161
AEIRSLVTW	9	Unmodified	_AEIRSLVTW_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.8007486230501	2	537.800749	1073.58694	1.2481	0.00067121	-1.2648	-0.0006802	-0.016714	-8.989E-06	537.8000163966619	24.936	0.14477	24.924	24.875	25.02	-0.012392	1254	70	0.8652351	0.04235655	0.86371565	351.00845	0	17.183197						178	7	3	NaN	NaN	NaN	0.090258	1	11422	11422		37.231	9.442	1	55159			256	2241;2242	162	166	194	194					0.053094318516286876
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2883993190501	2	631.288399	1260.56225	1.7442	0.0011011	-0.83139	-0.00052485	0.91283	0.00057626	631.2874858851029	15.726	0.2159	15.726	15.702	15.918	0	1134	94	0.9387595	0.056898355	0.9387595	380.1194	0	23.039124						290	10	4	NaN	NaN	NaN	0.07051	1	18006	18006		44.633	26.664	1	35540			257	5664	163	167	195	195					-0.05761292812417196
AEIVEGENHTY	11	Unmodified	_AEIVEGENHTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2883993190501	2	631.288399	1260.56225	1.8666	0.0011784	-0.90415	-0.00057078	0.96245	0.00060758	631.2882055565519	15.724	0.21554	15.711	15.687	15.903	-0.012611	1134	88	0.9387595	0.053227544	0.93724006	380.1194	0	21.552734						304	10	3	NaN	NaN	NaN	0.03394	1	17229	17229		54.277	20.852	1	37481			258	5664	163	167	196	196					-0.05761292812417196
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENSG00000168028|ENST00000301821|RPSA;nc|ENSG00000288920|A0A8I5KQE6|RPSA2	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.3007784128	2	576.300778	1150.587	1.3493	0.00077759	-2.8643	-0.0016507	-1.515	-0.00087312	576.2989183049771	13.06	0.14406	13.06	13.012	13.156	0	1215	34	0.8891654	0.020235598	0.8891654	360.41052	0	8.202209						112	7	2	NaN	NaN	NaN	0.17829	1	14837	14837		37.395	20.196	1	10236			259	4589	164	168	197	197					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENSG00000168028|ENST00000301821|RPSA;nc|ENSG00000288920|A0A8I5KQE6|RPSA2	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.3007784128	2	576.300778	1150.587	1.1366	0.00065501	0.76496	0.00044085	1.9015	0.0010959	576.3002984096137	13.086	0.095884	13.076	13.052	13.148	-0.009469	1215	34	0.8891654	0.020233393	0.88764596	360.41052	0	8.201324						107	5	3	NaN	NaN	NaN	0.66796	1	14333	14333		10.244	3.2594	1	10060			260	4589	164	168	198	198					0.01773387060939058
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7951319289	2	525.795132	1049.57571	1.1599	0.00060984	-0.82688	-0.00043477	0.33298	0.00017508	525.7944867844113	20.67	0.14459	20.67	20.622	20.766	0	1278	73	0.85049206	0.044238746	0.85049206	345.12747	0	17.951965						146	7	2	NaN	NaN	NaN	0.034172	1	10626	10626		53.652	10.657	1	21849			261	1054	165	169	199	199					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7951319289	2	525.795132	1049.57571	0.91102	0.00047901	-0.5311	-0.00027925	0.37992	0.00019976	525.7950363615796	20.694	0.096474	20.68	20.632	20.728	-0.014088	1278	73	0.85049206	0.044233978	0.8489726	345.12747	0	17.950043						166	5	3	NaN	NaN	NaN	0.41527	1	10407	10407		13.101	3.978	1	20166			262	1054	165	169	200	200					0.05290609757457787
AELAAAEVK	9	Unmodified	_AELAAAEVK_					0	0	0			REV__ENST00000392882.6_1_14:100800274-100800334:-|nuORF	REV__ENST00000392882.6_1_14:100800274-100800334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4989234108	1	901.498923	900.491647	1.643	0.0014811	7.2213	0.00651	8.8643	0.0079912	901.5053612053844	28.774	0.096523	28.774	28.725	28.822	0	363	52	1.4036897	0.030335188	1.4036897	285.42133	0	6.168274						98	5	2	NaN	NaN	NaN	0.20577	1	6097	6097		24.961	1.6266	1	13021	+		263	11982	166	170	201	201					0.037420786605594
AELAVILKF	9	Unmodified	_AELAVILKF_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.3129605413	2	502.312961	1002.61137	1.414	0.00071028	-1.2057	-0.00060562	0.20836	0.00010466	502.3120506560878	29.112	0.072384	29.112	29.087	29.16	0	1293	64	0.84127116	0.0387277	0.84127116	341.59265	0	15.725159						96	4	2	NaN	NaN	NaN	0.054111	1	8711	8711		45.165	20.603	1	12283			264	3090	167	171	202	202					0.11016692005136974
AELAVILKF	9	Unmodified	_AELAVILKF_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.3129605413	2	502.312961	1002.61137	1.0743	0.00053962	-2.0841	-0.0010469	-1.0098	-0.00050725	502.31174031165943	29.111	0.12068	29.103	29.079	29.2	-0.0077209	1293	46	0.84127116	0.027665615	0.8397517	341.59265	0	11.233459						112	6	3	NaN	NaN	NaN	0.33629	1	8534	8534		16.584	6.8382	1	10244			265	3090	167	171	203	203					0.11016692005136974
AELDLNWRVPD	11	Unmodified	_AELDLNWRVPD_					0	0	0			REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.33568386265	2	664.335684	1326.65681	2.0714	0.0013761	-3.1847	-0.0021157	-1.1133	-0.00073959	664.3330589526805	25.998	0.12066	25.998	25.926	26.046	0	1101	49	0.95892316	0.029311538	0.95892316	388.0743	0	11.862305						117	6	3	NaN	NaN	NaN	0.73057	1	19206	19206		5.4499	1.1398	1	9341.7	+		266	12322	168	172	204	204					0.006552657295515019
AELDLNWRVPD	11	Unmodified						0	0	0			REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.335684	1326.65681	2.0714	0.0013761	-3.1847	-0.0021157	-1.1133	-0.00073959	664.3330589526805	25.998	0.12066	25.998	25.926	26.046	0	1101	49	0.95892316	0.029311538	0.95892316	388.0743		11.862305	-0.01846	0.002499	0.0016758	NaN	5.4499	117	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9341.7	+		267	12322	168	172							0.006552657295515019
AELDLNWRVPD	11	Unmodified						0	0	0			REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	664.335684	1326.65681	2.5413	0.0016883	-8.1802	-0.0054344	-5.6389	-0.0037461	664.3325595758922	26.046	0.14483	26.035	25.938	26.083	-0.011135	1104	46	0.9570911	0.02748698	0.95557165	387.3329		11.123932	0.01846	-0.0041385	-0.0016758	NaN	5.4499	106	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12818	+		268	12322	168	172							0.006552657295515019
AELDRQIKSF	10	Unmodified	_AELDRQIKSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.8274946898	2	603.827495	1205.64044	1.4756	0.000891	-0.1606	-9.6975E-05	1.315	0.00079403	603.8270817136679	17.522	0.072023	17.508	17.46	17.532	-0.013567	1158	46	0.92408	0.027537405	0.9225606	374.36005	0	11.155884						107	4	3	NaN	NaN	NaN	0.40597	1	15968	15968		23.353	4.0163	1	8536.2			269	5722	169	173	205	205					0.04584184563464078
AELDRQIKSF	10	Unmodified						0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	603.827495	1205.64044	1.6537	0.00099857	-1.2816	-0.00077386	0.37215	0.00022471	603.8263106208981	17.453	0.071953	17.453	17.429	17.501	0	1161	40	0.9222442	0.02386576	0.9222442	373.61633		9.6684265	-0.027558	-0.00084794	-0.00015819	NaN	23.353	92	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6157.2			270	5722	169	173							0.04584184563464078
AELLQVANY	9	Unmodified	_AELLQVANY_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5360371986	1	1020.53604	1019.52876	2.9789	0.00304	-3.0831	-0.0031464	-0.10423	-0.00010637	1020.5364787318362	25.708	0.048235	25.708	25.684	25.732	0	195	40	1.5033154	0.023059964	1.5033154	305.14117	0	4.6806946						82	3	3	NaN	NaN	NaN	0.46215	1	9349	9349		11.17	4.7404	1	4709.9			271	799	170	174	206	206					0.01977750206322071
AELLQVANY	9	Unmodified	_AELLQVANY_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5360371986	1	1020.53604	1019.52876	2.5737	0.0026265	-4.1829	-0.0042688	-1.6092	-0.0016423	1020.5319543232952	25.708	0.12064	25.696	25.672	25.793	-0.0116	195	49	1.5033154	0.028379917	1.501796	305.14117	0	5.7605286						99	6	2	NaN	NaN	NaN	0.44082	1	9160	9160		12.049	4.4611	1	6965.9			272	799	170	174	207	207					0.01977750206322071
AELTRHNY	8	Unmodified	_AELTRHNY_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.25142291699996	2	502.251423	1002.48829	1.8139	0.00091102	-11.401	-0.0057264	-9.5876	-0.0048154	502.2458509418081	19.9	0.12024	19.9	19.852	19.972	0	1302	34	0.8357362	0.020296931	0.8357362	339.34586	0	8.241455						85	6	2	NaN	NaN	NaN	0.77891	1	8686	8686		12.049	0.50025	1	10265			273	1975	171	175	208	208					-0.01285171393442397
AEMEERFYRY	10	Unmodified	_AEMEERFYRY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant;ENST00000536999.1_1_12:6705170-6707214:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.2116882725667	3	465.211688	1392.61324	1.3323	0.00061979	-0.089936	-4.1839E-05	1.2423	0.00057795	465.21139800571785	17.858	0.071947	17.844	17.82	17.892	-0.013786	1431	34	0.75620437	0.020391703	0.7546849	458.82416	0	12.372589						63	4	2	NaN	NaN	NaN	0.66854	1	19065	19065		10.204	3.3962	1	6833.1			274	1821	172	176	209	209					-0.06736667039217537
AEMEERFYRY	10	Unmodified						0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant;ENST00000536999.1_1_12:6705170-6707214:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	465.211688	1392.61324	1.4762	0.00068674	1.0264	0.00047752	2.5026	0.0011643	465.5477396596504	17.789	0.071934	17.789	17.765	17.837	0	1428	40	0.7580582	0.02409923	0.7580582	459.9489		14.622131	-0.027505	0.0010727	0.0016866	NaN	10.204	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6914.6			275	1821	172	176							-0.06736667039217537
AEMLPGVLQQF	11	Unmodified	_AEMLPGVLQQF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8208237506501	2	616.820824	1231.62709	0.62601	0.00038614	-1.8373	-0.0011333	-1.2113	-0.00074714	616.8193242983024	31.839	0.14481	31.839	31.79	31.935	0	1161	55	0.9222442	0.033043087	0.9222442	373.5271	0	13.383118						216	7	3	NaN	NaN	NaN	0.50669	1	17317	17317		18.233	8.6219	1	37559			276	1474	173	177	210	210					0.020546104598906823
AEMLPGVLQQF	11	Unmodified	_AEMLPGVLQQF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8208237506501	2	616.820824	1231.62709	0.15838	9.769E-05	-1.7998	-0.0011102	-1.6415	-0.0010125	616.8202826467079	31.838	0.12064	31.833	31.785	31.906	-0.0044155	1158	76	0.92408	0.045900643	0.9225606	374.27066	0	18.590668						265	6	4	NaN	NaN	NaN	0.043578	1	16593	16593		51.467	38.897	1	40913			277	1474	173	177	211	211					0.020546104598906823
AENAEFMRNF	10	Unmodified	_AENAEFMRNF_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7744048743001	2	614.774405	1227.53426	1.0046	0.00061763	1.5004	0.00092243	2.5051	0.0015401	614.7757081771739	21.609	0.16868	21.609	21.513	21.681	0	1194	55	0.902037	0.03307879	0.902037	365.3563	0	13.398071						119	8	2	NaN	NaN	NaN	0.73114	1	17173	17173		5.9198	0.22562	1	14548			278	1216	174	178	212	212					-0.07040894273495724
AENAEFMRNF	10	Unmodified						0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.774405	1227.53426	1.0189	0.00062639	-0.77437	-0.00047607	0.24452	0.00015032	614.7746155099416	21.609	0.16855	21.595	21.523	21.691	-0.013897	1194	37	0.902037	0.022057295	0.9005176	365.3563		8.9339905	-0.0068572	-0.00088696	-0.00075972	NaN	5.9198	168	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14530			279	1216	174	178							-0.07040894273495724
AEPGHEEV	8	Unmodified	_AEPGHEEV_					0	0	0		nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2;ENST00000575944.1_1_17:1519839-1531078:-|nuORF	nc|ENSG00000167703|Q8N370-2|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.3842875835	1	867.384288	866.377011	1.9005	0.0016484	5.568	0.0048296	7.4684	0.006478	867.3878748060646	25.298	0.072353	25.298	25.274	25.346	0	435	55	1.360811	0.03219676	1.360811	276.86646	0	6.5506287						88	4	2	NaN	NaN	NaN	0.30832	1	5618	5618		41.46	4.8736	1	9812.3			280	4563	175	179	213	213					-0.06152230821373905
AEPGQGPA	8	Unmodified	_AEPGQGPA_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3416944873001	1	726.341694	725.334418	1.4729	0.0010698	0.32061	0.00023287	1.7935	0.0013027	726.3418555456647	21.489	0.12055	21.475	21.45	21.571	-0.014006	636	73	1.2405256	0.043260098	1.2390062	253.15909	0	8.828278						158	6	2	NaN	NaN	NaN	0.16655	1	3606	3606		52.624	0	1	18657	+		281	8847	176	180	214	214					-0.03923581158949219
AEPGSVISW	9	Unmodified	_AEPGSVISW_					0	0	0		ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000244482|Q6PI73|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73-2|LILRA6;nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.4676232824	1	945.467623	944.460347	2.0377	0.0019266	0.49128	0.00046449	2.529	0.0023911	945.4683921438481	26.239	0.1448	26.239	26.191	26.336	0	369	40	1.4001206	0.02320242	1.4001206	284.49606	0	4.71463						116	7	2	NaN	NaN	NaN	0.04947	1	6929	6929		47.136	17.537	1	10363			282	6092	177	181	215	215					-0.014104943735219422
AEPGSVISW	9	Unmodified						0	0	0		ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000244482|Q6PI73|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73-2|LILRA6;nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	945.467623	944.460347	2.0138	0.001904	-0.80002	-0.0007564	1.2138	0.0011476	945.4667827543282	26.239	0.096506	26.228	26.18	26.276	-0.011137	369	52	1.4001206	0.030338526	1.3986012	284.49606		6.164612	-0.0056648	-0.00081665	-0.00075972	NaN	47.136	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9723.4			283	6092	177	181							-0.014104943735219422
AEPVACETD	9	Unmodified	_AEPVACETD_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.382238673	1	934.382239	933.374962	1.5492	0.0014475	-4.032	-0.0037674	-2.4828	-0.0023199	934.3794029030539	27.471	0.19312	27.471	27.35	27.543	0	405	76	1.3786905	0.044662952	1.3786905	280.1894	0	9.076782						376	9	4	NaN	NaN	NaN	0.18779	1	6671	6671		26.115	6.9966	1	37835	+		284	13212	178	182	216	216					-0.09439027621499463
AEPVACETD	9	Unmodified	_AEPVACETD_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.382238673	1	934.382239	933.374962	1.2472	0.0011654	-3.8921	-0.0036367	-2.6449	-0.0024714	934.3787626920092	27.494	0.19307	27.484	27.388	27.581	-0.009552	399	76	1.382264	0.044658184	1.3807446	280.91565	0	9.075836						223	9	2	NaN	NaN	NaN	0.10956	1	6530	6530		34.439	12.312	1	28435	+		285	13212	178	182	217	217					-0.09439027621499463
AEPVACETD	9	Unmodified						0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.382239	933.374962	1.5492	0.0014475	-4.032	-0.0037674	-2.4828	-0.0023199	934.3794029030539	27.471	0.19312	27.471	27.35	27.543	0	405	76	1.3786905	0.044662952	1.3786905	280.1894		9.076782	-0.006894	-8.7644E-05	-0.0010271	NaN	34.439	376	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37835	+		286	13212	178	182							-0.09439027621499463
AEPVACETD	9	Unmodified						0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	934.382239	933.374962	1.2472	0.0011654	-3.8921	-0.0036367	-2.6449	-0.0024714	934.3787626920092	27.494	0.19307	27.484	27.388	27.581	-0.009552	399	76	1.382264	0.044658184	1.3807446	280.91565		9.075836	0.006894	4.3024E-05	0.0010271	NaN	34.439	223	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28435	+		287	13212	178	182							-0.09439027621499463
AEQADVDESE	10	Unmodified	_AEQADVDESE_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7200151926	2	546.720015	1091.42548	1.8564	0.001015	-4.363	-0.0023854	-2.5066	-0.0013704	547.2189700092997	26.36	0.16893	26.36	26.312	26.481	0	1284	49	0.8468043	0.029505253	0.8468043	343.46033	0	11.967194						288	8	5	NaN	NaN	NaN	0.44412	1	12444	12444		21.771	1.3224	1	57513	+		288	10899	179	183	218	218					-0.11657826762780132
AEQELANLEKW	11	Unmodified	_AEQELANLEKW_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.8355166871501	2	665.835517	1329.65648	1.6094	0.0010716	-2.4718	-0.0016458	-0.86245	-0.00057425	665.833632837238	23.947	0.1206	23.947	23.899	24.019	0	1119	61	0.9479278	0.036674976	0.9479278	383.61557	0	14.841949						138	6	3	NaN	NaN	NaN	0.0035853	1	19245	19245		75.53	44.332	1	18688			289	2812	180	184	219	219					0.004838460097062125
AEQELANLEKW	11	Unmodified	_AEQELANLEKW_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.8355166871501	2	665.835517	1329.65648	1.8303	0.0012187	-3.1038	-0.0020666	-1.2735	-0.00084791	665.8338138460862	23.947	0.12062	23.934	23.91	24.03	-0.013048	1122	55	0.9460945	0.03300035	0.9445751	382.87366	0	13.354858						147	6	3	NaN	NaN	NaN	0.57312	1	18389	18389		15.786	4.0471	1	16680			290	2812	180	184	220	220					0.004838460097062125
AEQQVPLVLW	10	Unmodified	_AEQQVPLVLW_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8295060625001	2	591.829506	1181.64446	0.75799	0.0004486	-4.8266	-0.0028565	-4.0686	-0.0024079	591.8266100882977	33.166	0.12066	33.166	33.142	33.262	0	1185	34	0.90755045	0.020211518	0.90755045	367.74814	0	8.189911						94	6	3	NaN	NaN	NaN	0.2504	1	15890	15890		31.198	19.149	1	10586			291	779	181	185	221	221					0.06090274057191891
AERLREVFNTA	11	Unmodified	_AERLREVFNTA_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3491255889	2	653.349126	1304.6837	1.4924	0.00097505	-10.294	-0.0067257	-8.8019	-0.0057507	653.342980709256	19.54	0.047998	19.54	19.516	19.564	0	1131	46	0.94059354	0.027513683	0.94059354	380.72247	0	11.136658						58	3	2	NaN	NaN	NaN	0.6875	1	18854	18854		8.2775	0.68994	1	6829.7		+	292	180	182	186	222	222					0.04354374340755385
AERRDGAR	8	Unmodified	_AERRDGAR_					0	0	0			REV__ENST00000263674.3_1_11:73020153-73020513:+|nuORF	REV__ENST00000263674.3_1_11:73020153-73020513:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4864016646001	1	930.486402	929.479125	1.9189	0.0017855	-5.5927	-0.0052039	-3.6738	-0.0034184	930.4840152418584	55.1	0.072285	55.1	55.076	55.148	0	264	121	1.4624695	0.07114601	1.4624695	297.23383	0	14.459808						192	4	4	NaN	NaN	NaN	0.83582	1	6592	6592		4.4131	0	1	14980	+		293	11560	183	187	223	223					0.011564800408905285
AESDFASTF	9	Unmodified	_AESDFASTF_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4101679830001	1	974.410168	973.402892	1.8291	0.0017823	-1.9436	-0.0018938	-0.1145	-0.00011157	974.4091087546466	23.875	0.16883	23.875	23.851	24.019	0	315	49	1.4322147	0.028503776	1.4322147	290.893	0	5.789337						95	8	2	NaN	NaN	NaN	0.028349	1	7692	7692		61.271	31.673	1	7266.1			294	1823	184	188	224	224					-0.08487381369752711
AESDFASTF	9	Unmodified	_AESDFASTF_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4101679830001	1	974.410168	973.402892	2.0443	0.001992	-1.3652	-0.0013303	0.67907	0.00066169	974.4093676792687	23.875	0.09646	23.861	23.861	23.958	-0.013048	312	43	1.433996	0.024938107	1.4324765	291.25476	0	5.0651245						81	5	2	NaN	NaN	NaN	0.29681	1	7543	7543		19.118	3.9429	1	5982.7			295	1823	184	188	225	225					-0.08487381369752711
AESITDVL	8	Unmodified	_AESITDVL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4407398299	1	847.44074	846.433463	2.1147	0.001792	1.6964	0.0014376	3.811	0.0032296	847.4431512890872	26.191	0.12064	26.191	26.167	26.288	0	438	70	1.359022	0.04112935	1.359022	276.60428	0	8.371124						134	6	2	NaN	NaN	NaN	0.30832	1	5342	5342		41.46	5.4237	1	14315			296	3419	185	189	226	226					0.0041039701528688965
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.76383180049993	2	509.763832	1017.51311	2.1875	0.0011151	-1.9989	-0.001019	0.18861	9.6145E-05	509.76293743432996	17.837	0.14391	17.837	17.813	17.957	0	1290	40	0.84311575	0.023982108	0.84311575	342.27377	0	9.73584						110	7	2	NaN	NaN	NaN	0.094712	1	9269	9269		36.586	21.411	1	13778			297	2404	186	190	227	227					0.005054636892737108
AESIVVHTY	9	Unmodified	_AESIVVHTY_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.76383180049993	2	509.763832	1017.51311	1.6651	0.00084883	-0.17521	-8.9318E-05	1.4899	0.00075951	509.7633038202772	17.858	0.11995	17.844	17.82	17.94	-0.013786	1293	43	0.84127116	0.02582264	0.8397517	341.52493	0	10.483063						133	6	3	NaN	NaN	NaN	0.074859	1	9092	9092		39.459	21.66	1	16577			298	2404	186	190	228	228					0.005054636892737108
AESPNASDTE	10	Unmodified	_AESPNASDTE_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.70945050629996	2	510.709451	1019.40435	2.4306	0.0012413	-1.8656	-0.00095277	0.56506	0.00028858	510.70900790317927	18.316	0.168	18.316	18.292	18.46	0	1335	61	0.8154261	0.036937475	0.8154261	331.0246	0	14.994873						235	8	3	NaN	NaN	NaN	0.44412	1	9333	9333		21.771	7.346	1	22188			299	833	187	191	229	229					-0.10457792071656513
AETAAATDR	9	Unmodified	_AETAAATDR_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	905.4323004086	1	905.4323	904.425024	2.464	0.002231	-2.8279	-0.0025605	-0.36387	-0.00032946	905.4306088767424	18.292	0.071905	18.292	18.268	18.34	0	426	55	1.3661768	0.032182932	1.3661768	277.77545	0	6.5435486						74	4	2	NaN	NaN	NaN	0.27442	1	6158	6158		20.555	0	1	5216.9	+		300	11059	188	192	230	230					-0.031011569013344342
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.8002173068	2	521.800217	1041.58588	1.372	0.00071593	-1.5611	-0.00081459	-0.18909	-9.8665E-05	521.7997615091566	28.87	0.16897	28.87	28.846	29.015	0	1254	40	0.8652351	0.023945808	0.8652351	351.14505	0	9.71814						136	8	3	NaN	NaN	NaN	0.078597	1	10296	10296		38.918	12.186	1	14902			301	1366	189	193	231	231					0.0667521748271156
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.8002173068	2	521.800217	1041.58588	1.1501	0.00060011	-0.59638	-0.00031119	0.5537	0.00028892	521.8003607153144	28.894	0.096558	28.885	28.861	28.958	-0.0083485	1257	46	0.86339295	0.027629793	0.8618735	350.3974	0	11.213226						118	5	3	NaN	NaN	NaN	0.49672	1	10087	10087		9.746	2.2056	1	16533			302	1366	189	193	232	232					0.0667521748271156
AETPDLFKL	9	Unmodified	_AETPDLFKL_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.2818573781501	2	517.281857	1032.54916	2.0087	0.0010391	-1.9202	-0.00099328	0.088528	4.5794E-05	517.281070524565	25.298	0.096472	25.298	25.274	25.371	0	1272	70	0.854179	0.042397797	0.854179	346.69763	0	17.208557						195	5	3	NaN	NaN	NaN	0.25548	1	9889	9889		21.771	0	1	25085			303	2084	190	194	233	233					0.03418920866147346
AETWNLENLIV	11	Unmodified	_AETWNLENLIV_					0	0	0			REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47-4|CACNA2D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.34043488955	2	651.340435	1300.66632	1.9626	0.0012783	-10.44	-0.0068	-8.4775	-0.0055217	651.3336907358099	30.125	0.28964	30.125	30.004	30.294	0	1101	79	0.95892316	0.04764664	0.95892316	388.15427	0	19.286469						539	13	3	NaN	NaN	NaN	0.63477	1	18794	18794		11.739	0	1	130910	+		304	8379	191	195	234	234					0.02801034015078585
AEVRYRLF	8	Unmodified	_AEVRYRLF_					0	0	0			REV__ENST00000527653.1_1_8:145139258-145139832:+|nuORF	REV__ENST00000527653.1_1_8:145139258-145139832:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2956334554	2	527.295633	1052.57671	0.99807	0.00052628	4.4026	0.0023215	5.4007	0.0028478	527.2973073751907	24.743	0.193	24.731	24.707	24.9	-0.012394	1251	73	0.8670771	0.044190943	0.8655577	351.84464	0	17.931915						116	6	3	NaN	NaN	NaN	0.77891	1	10528	10528		12.049	3.7584	1	16516	+		305	11163	192	196	235	235					0.05252868917023079
AEYDAMLL	8	Unmodified	_AEYDAMLL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.433545962	1	925.433546	924.426269	1.2424	0.0011498	0.72043	0.00066671	1.9628	0.0018165	925.4321009078603	31.79	0.16895	31.79	31.766	31.935	0	309	52	1.435777	0.030277252	1.435777	291.83206	0	6.1540833						138	8	3	NaN	NaN	NaN	0.40747	1	6491	6491		36.036	12.186	1	10794			306	5630	193	197	236	236					-0.03896658856785962
AEYDAMLL	8	Unmodified						0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	925.433546	924.426269	0.37182	0.0003441	1.5521	0.0014364	1.9239	0.0017805	925.4337809411395	31.789	0.096575	31.785	31.761	31.857	-0.0044174	306	43	1.4375578	0.024932861	1.4360384	292.19403		5.06781	-0.002737	0.00026621	0.00013069	NaN	36.036	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9412.6			307	5630	193	197							-0.03896658856785962
AFADGCKRSKF	11	Unmodified	_AFADGCKRSKF_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-3|NLRC5	REV__nc|ENSG00000140853|Q86WI3-3|NLRC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.54136873363336	3	410.541369	1228.60228	1.5222	0.00062494	5.1233	0.0021033	6.6455	0.0027283	410.5432701807482	16.134	0.16792	16.134	16.062	16.23	0	1470	46	0.7320868	0.027840078	0.7320868	444.77246	0	16.91397						141	8	2	NaN	NaN	NaN	0.48069	1	17209	17209		10.204	1.2	1	24609	+		308	9810	194	198	237	237					-0.0028802462284147623
AFADGCKRSKF	11	Unmodified						0	0	0			REV__nc|ENSG00000140853|Q86WI3-3|NLRC5	REV__nc|ENSG00000140853|Q86WI3-3|NLRC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	410.541369	1228.60228	1.5222	0.00062494	5.1233	0.0021033	6.6455	0.0027283	410.5432701807482	16.134	0.16792	16.134	16.062	16.23	0	1470	46	0.7320868	0.027840078	0.7320868	444.77246		16.91397	0	0	0	NaN	10.204	141	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24609	+		309	9810	194	198							-0.0028802462284147623
AFATLVATKCL	11	Unmodified	_AFATLVATKCL_					0	0	0			REV__ENSG00000136518|ENST00000429709|ACTL6A	REV__ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3204596099	2	569.32046	1136.62637	1.4547	0.0008282	3.9032	0.0022222	5.3579	0.0030504	569.3224778554596	20.742	0.048237	20.742	20.718	20.766	0	1185	64	0.90755045	0.03859818	0.90755045	367.91614	0	15.647491						75	3	3	NaN	NaN	NaN	0.54514	1	14351	14351		16.858	0.27415	1	9469.8	+		310	8626	195	199	238	238					0.06351815810808148
AFATPFLVV	9	Unmodified	_AFATPFLVV_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.77875358320006	2	482.778754	963.542954	1.9184	0.00092615	-10.988	-0.005305	-9.0701	-0.0043789	482.7739056756476	21.705	0.14446	21.691	21.643	21.788	-0.013897	1341	61	0.8117308	0.036945462	0.81021136	329.77887	0	15.009705						167	7	2	NaN	NaN	NaN	0.17818	1	7295	7295		26.732	4.6052	1	21285			311	2528	196	200	239	239					0.05972447425290284
AFATPFLVV	9	Unmodified						0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	482.778754	963.542954	1.8719	0.00090373	-6.2498	-0.0030173	-4.3778	-0.0021135	482.77600428025914	21.85	0.07218	21.85	21.802	21.874	0	1326	49	0.8209676	0.029553175	0.8209676	333.53146		12.00647	0.079229	0.0014262	0.0053782	NaN	26.732	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13081			312	2528	196	200							0.05972447425290284
AFCGSAPM	8	Unmodified	_AFCGSAPM_					0	0	0			REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3164077142001	1	783.316408	782.309131	1.285	0.0010065	-0.034527	-2.7045E-05	1.2504	0.00097948	783.316936938039	41.522	0.26472	41.522	41.401	41.666	0	669	46	1.2206948	0.027056336	1.2206948	248.77548	0	5.5140533						290	12	4	NaN	NaN	NaN	0.84692	1	4517	4517		1.4396	0	1	55032	+		313	13549	197	201	240	240					-0.09073095277381071
AFCGSAPM	8	Unmodified						0	0	0			REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.316408	782.309131	1.285	0.0010065	-0.034527	-2.7045E-05	1.2504	0.00097948	783.316936938039	41.522	0.26472	41.522	41.401	41.666	0	669	46	1.2206948	0.027056336	1.2206948	248.77548		5.5140533	0.092939	-0.00078738	-0.00014216	NaN	1.4396	290	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55032	+		314	13549	197	201							-0.09073095277381071
AFCGSAPM	8	Unmodified						0	0	0			REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	REV__tr|U7SXI5|U7SXI5_FUSNUDihydroorotatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrDPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.316408	782.309131	1.1898	0.00093197	2.0001	0.0015668	3.1899	0.0024987	783.3183599555961	41.328	0.31307	41.336	41.095	41.408	0.0082626	666	52	1.2224985	0.030663848	1.2209791	249.14308		6.2492523	-0.092939	0.00080641	0.00014216	NaN	1.4396	279	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77462	+		315	13549	197	201							-0.09073095277381071
AFCRDEEFAEF	11	Unmodified	_AFCRDEEFAEF_					0	0	0			REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	REV__nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.2848023851001	2	682.284802	1362.55505	1.474	0.0010057	-5.4203	-0.0036982	-3.9463	-0.0026925	682.2803643222279	24.212	0.28958	24.199	24.127	24.417	-0.012749	1113	70	0.9515937	0.042164862	0.95007426	385.00348	0	17.059418						351	13	3	NaN	NaN	NaN	0.54514	1	18798	18798		16.858	2.9095	1	45002	+		316	10711	198	202	241	241					-0.11172348684499411
AFDASRTSF	9	Unmodified	_AFDASRTSF_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.23798119075	2	501.237981	1000.46141	2.1523	0.0010788	-1.9667	-0.00098578	0.18557	9.3016E-05	501.73830615845304	18.173	0.11992	18.173	18.149	18.268	0	1323	61	0.8228144	0.0369215	0.8228144	334.10812	0	14.9921875						136	6	3	NaN	NaN	NaN	0.14787	1	8596	8596		28.896	8.4469	1	16996			317	1520	199	203	242	242					-0.03880280004614178
AFDDAIAEL	9	Unmodified	_AFDDAIAEL_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4622035535	1	964.462204	963.454927	1.1278	0.0010877	3.4181	0.0032966	4.5459	0.0043843	964.4655688876006	28.725	0.072378	28.716	28.692	28.765	-0.0083504	237	43	1.4784646	0.024869442	1.4769452	300.32993	0	5.05188						74	4	2	NaN	NaN	NaN	0.12945	1	7273	7273		31.561	9.4347	1	39120			318	1704;2559	200	204	243	243					-0.028262179559988
AFDEAIAEL	9	Unmodified	_AFDEAIAEL_					0	0	0		ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000166913|ENST00000353703|YWHAB	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4778536177001	1	978.477854	977.470577	1.9961	0.0019532	1.186	0.0011605	3.1822	0.0031137	978.4795551495457	28.026	0.14478	28.026	27.977	28.122	0	219	64	1.4891195	0.03728628	1.4891195	302.43317	0	7.572693						219	7	3	NaN	NaN	NaN	0.094712	1	7809	7809		36.586	6.9881	1	27343			319	2862	201	205	244	244					-0.01905931438943753
AFDEAIAEL	9	Unmodified	_AFDEAIAEL_					0	0	0		ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000166913|ENST00000353703|YWHAB	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4778536177001	1	978.477854	977.470577	1.4378	0.0014069	1.0536	0.0010309	2.4914	0.0024378	978.4790412196672	28.025	0.16892	28.016	27.992	28.161	-0.0089779	213	82	1.4926696	0.047954798	1.4911501	303.15417	0	9.73941						222	8	3	NaN	NaN	NaN	0.12945	1	7650	7650		31.561	9.7261	1	27787			320	2862	201	205	245	245					-0.01905931438943753
AFDGPITI	8	Unmodified	_AFDGPITI_					0	0	0		CD44-PDHX|1|fusion;CD44-PDHX|3|fusion;CD44-PDHX|6|fusion;CD44-PDHX|2|fusion;ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-16|CD44;ENST00000525209.5_1_11:35208413-35222108:+|nuORF;ENST00000531118.5_1_11:35198231-35211698:+|nuORF;nc|ENSG00000026508|P16070-10|CD44;CD44-PDHX|7|fusion;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-15|CD44;CD44-PDHX|4|fusion	CD44-PDHX|1|fusion	CD44-PDHX|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4403458994001	1	833.440346	832.433069	1.5899	0.0013251	0.1781	0.00014844	1.768	0.0014735	833.4404549724859	27.446	0.072411	27.446	27.422	27.495	0	495	49	1.3249949	0.028680325	1.3249949	269.75116	0	5.8389587						86	4	2	NaN	NaN	NaN	0.23625	1	5167	5167		47.136	16.345	1	7795			321	87	202	206	246	246					0.01015022086096451
AFDGPITI	8	Unmodified	_AFDGPITI_					0	0	0		CD44-PDHX|1|fusion;CD44-PDHX|3|fusion;CD44-PDHX|6|fusion;CD44-PDHX|2|fusion;ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-16|CD44;ENST00000525209.5_1_11:35208413-35222108:+|nuORF;ENST00000531118.5_1_11:35198231-35211698:+|nuORF;nc|ENSG00000026508|P16070-10|CD44;CD44-PDHX|7|fusion;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-15|CD44;CD44-PDHX|4|fusion	CD44-PDHX|1|fusion	CD44-PDHX|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.4403458994001	1	833.440346	832.433069	1.1034	0.00091958	0.84779	0.00070658	1.9511	0.0016262	833.4408872441262	27.47	0.096481	27.46	27.412	27.508	-0.0095501	492	58	1.3267875	0.034048796	1.325268	270.1161	0	6.931885						95	5	2	NaN	NaN	NaN	0.12876	1	5053	5053		58.599	27.038	1	8947.4			322	87	202	206	247	247					0.01015022086096451
AFDLDVVKL	9	Unmodified	_AFDLDVVKL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.29222509920004	2	510.292225	1018.5699	1.9894	0.0010152	-1.5222	-0.00077678	0.46714	0.00023838	510.29158010618426	28.484	0.1207	28.484	28.46	28.581	0	1278	52	0.85049206	0.031340897	0.85049206	345.2635	0	12.723053						167	6	4	NaN	NaN	NaN	0.032689	1	9330	9330		55.592	28.295	1	65463			323	1179	203	207	248	248					0.061355112458159056
AFDLDVVKL	9	Unmodified	_AFDLDVVKL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.29222509920004	2	510.292225	1018.5699	0.9897	0.00050504	-1.2571	-0.00064151	-0.26745	-0.00013648	510.29142243919364	28.483	0.12065	28.475	28.451	28.572	-0.0083504	1278	49	0.85049206	0.029495716	0.8489726	345.2635	0	11.973999						208	6	4	NaN	NaN	NaN	0.23499	1	9138	9138		23.086	13.34	1	64430			324	1179	203	207	249	249					0.061355112458159056
AFDLIEHYF	9	Unmodified	_AFDLIEHYF_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7794818647	2	577.779482	1153.54441	2.0033	0.0011575	4.6443	0.0026834	6.6476	0.0038409	577.7825030304367	30.053	0.14485	30.053	30.004	30.149	0	1191	73	0.90387505	0.044133663	0.90387505	366.36172	0	17.888397						217	7	4	NaN	NaN	NaN	0.030391	1	14919	14919		58.599	38.044	1	30542			325	476;1938	204	208	250	250					-0.026219632766469658
AFDLIEHYF	9	Unmodified	_AFDLIEHYF_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;KPNA1|p.G505E|1|0.16|ENSG00000114030|chr3:122427088-122427088|C/T|missense_variant;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7794818647	2	577.779482	1153.54441	0.98299	0.00056795	3.6043	0.0020825	4.5873	0.0026505	577.781427696907	30.052	0.1448	30.045	29.997	30.142	-0.0064106	1188	79	0.90571284	0.04781151	0.9041934	367.10663	0	19.37912						213	7	4	NaN	NaN	NaN	0.023828	1	14425	14425		67.154	43.978	1	28370			326	476;1938	204	208	251	251					-0.026219632766469658
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2765750350001	2	520.276575	1038.5386	1.1944	0.00062144	-1.9234	-0.0010007	-0.72892	-0.00037924	520.2754940414305	35.771	0.16879	35.771	35.723	35.892	0	1302	49	0.8357362	0.029521227	0.8357362	339.18628	0	11.981262						201	8	3	NaN	NaN	NaN	0.028349	1	10140	10140		61.271	13.79	1	33883			327	1399	205	209	252	252					0.020869382117098212
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2765750350001	2	520.276575	1038.5386	0.88235	0.00045906	-0.94778	-0.00049311	-0.065437	-3.4045E-05	520.2757685943799	35.794	0.14458	35.794	35.746	35.891	0.00052643	1299	43	0.8375814	0.025833845	0.83606195	339.93515	0	10.484772						180	7	3	NaN	NaN	NaN	0.055351	1	9938	9938		44.638	6.5077	1	24154			328	1399	205	209	253	253					0.020869382117098212
AFDLSQVLF	9	Unmodified	_AFDLSQVLF_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5458736034	1	1039.54587	1038.5386	1.2187	0.0012668	2.7578	0.0028669	3.9765	0.0041337	1039.5493063727681	35.77	0.24091	35.77	35.722	35.963	0.00053024	93	175	1.5635144	0.10267055	1.5619949	317.2827	0	20.834839						785	11	4	NaN	NaN	NaN	0.055351	1	9943	9943		44.638	11.213	1	202620			329	1399	205	209	254	254					0.020869382117098212
AFDLTEQRY	9	Unmodified	_AFDLTEQRY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7774704920001	2	571.77747	1141.54039	1.4824	0.00084761	-1.1408	-0.00065229	0.34161	0.00019532	571.7768412352227	20.573	0.19264	20.573	20.525	20.718	0	1227	73	0.88180584	0.04414797	0.88180584	357.46097	0	17.896454						289	9	3	NaN	NaN	NaN	0.14787	1	14512	14512		28.896	14.471	1	51523			330	3577	206	210	255	255					-0.02472052770326627
AFDLTEQRY	9	Unmodified	_AFDLTEQRY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7774704920001	2	571.77747	1141.54039	0.93273	0.00053331	-0.38115	-0.00021793	0.55158	0.00031538	571.7770877401952	20.574	0.21693	20.559	20.535	20.752	-0.014086	1227	73	0.88180584	0.0441671	0.8802864	357.46097	0	17.904175						291	10	3	NaN	NaN	NaN	0.31471	1	14037	14037		17.97	3.5447	1	49696			331	3577	206	210	256	256					-0.02472052770326627
AFDNMVTSM	9	Unmodified	_AFDNMVTSM_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.4223293487	1	1015.42233	1014.41505	2.3799	0.0024166	-1.3249	-0.0013453	1.055	0.0010713	1015.4220298206906	25.395	0.12066	25.395	25.371	25.491	0	204	43	1.4979934	0.024840355	1.4979934	304.08136	0	5.0424194						114	6	3	NaN	NaN	NaN	0.14787	1	9142	9142		28.896	8.4469	1	10975			332	4550	207	211	257	257					-0.09157804222570576
AFDNMVTSM	9	Unmodified						0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1015.42233	1014.41505	2.2681	0.0023031	0.80663	0.00081907	3.0747	0.0031221	1015.4234170317659	25.394	0.072351	25.382	25.358	25.431	-0.012011	201	49	1.4997677	0.028388977	1.4982482	304.4415		5.7627563	-0.0061507	0.00063546	0.00012739	NaN	28.896	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10326			333	4550	207	211							-0.09157804222570576
AFDPTSTLL	9	Unmodified	_AFDPTSTLL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	1.3819	0.0013329	-1.9419	-0.0018729	-0.55992	-0.00054004	964.4965144925324	28.676	0.1689	28.668	28.62	28.789	-0.0083504	255	133	1.4678029	0.07821083	1.4662834	298.164	0	15.887451						514	8	4	NaN	NaN	NaN	0.028349	1	7279	7279		61.271	26.832	1	158120			334	5325	208	212	258	258					0.008106589407248066
AFDSSLVFI	9	Unmodified	_AFDSSLVFI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5193245019001	1	998.519325	997.512048	1.1065	0.0011048	1.0408	0.0010393	2.1473	0.0021441	998.5189937932201	33.648	0.096558	33.648	33.6	33.697	0	168	55	1.5192716	0.031900406	1.5192716	308.47073	0	6.4770203						119	5	2	NaN	NaN	NaN	0.078597	1	8478	8478		38.918	12.186	1	13848			335	4223	209	213	259	259					0.013192493203860067
AFDSSLVFI	9	Unmodified	_AFDSSLVFI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5193245019001	1	998.519325	997.512048	0.86727	0.00086599	1.2143	0.0012125	2.0815	0.0020785	998.5212220039708	33.623	0.12063	33.621	33.597	33.718	-0.0018501	162	58	1.5228153	0.033667326	1.5212959	309.19025	0	6.8357544						119	6	2	NaN	NaN	NaN	0.29681	1	8302	8302		19.118	3.6556	1	13093			336	4223	209	213	260	260					0.013192493203860067
AFDVAEKYL	9	Unmodified	_AFDVAEKYL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.27403234605	2	528.274032	1054.53351	1.2917	0.0006824	1.1639	0.00061485	2.4556	0.0012972	528.2754967131467	23.875	0.09642	23.861	23.837	23.934	-0.013048	1278	61	0.85049206	0.036857605	0.8489726	345.10645	0	14.955841						111	5	2	NaN	NaN	NaN	0.040769	1	10613	10613		50.831	20.221	1	16300			337	786	210	214	261	261					0.008426343491009902
AFDVAEREF	9	Unmodified	_AFDVAEREF_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2589135981	2	542.258914	1082.50327	1.7302	0.00093821	-0.55606	-0.00030153	1.1741	0.00063668	542.2584940003027	21.561	0.14455	21.561	21.537	21.681	0	1257	67	0.86339295	0.040530264	0.86339295	350.22458	0	16.440582						261	7	4	NaN	NaN	NaN	0.055363	1	12079	12079		44.633	15.035	1	76142			338	2836	211	215	262	262					-0.034677243161013394
AFDVAEREF	9	Unmodified	_AFDVAEREF_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2589135981	2	542.258914	1082.50327	1.6283	0.00088295	-0.20885	-0.00011325	1.4194	0.0007697	542.2588766925725	21.561	0.19272	21.547	21.475	21.667	-0.013895	1254	58	0.8652351	0.03500533	0.86371565	350.97183	0	14.199463						251	9	3	NaN	NaN	NaN	0.10206	1	11765	11765		35.523	17.553	1	72695			339	2836	211	215	263	263					-0.034677243161013394
AFDVAEREF	9	Unmodified						0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.258914	1082.50327	2.3699	0.0012851	0.0529	2.8686E-05	2.4228	0.0013138	542.7590119935032	21.874	0.048141	21.86	21.836	21.884	-0.013895	1257	37	0.86339295	0.022104979	0.8618735	350.22458		8.966644	0.14952	0.0005602	-0.00075972	NaN	44.633	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2453.7			340	2836	211	215							-0.034677243161013394
AFDVVERSFL	10	Unmodified	_AFDVVERSFL_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8113133093501	2	591.811313	1181.60807	1.1237	0.000665	-0.90146	-0.0005335	0.22221	0.00013151	591.8102533070497	26.915	0.14474	26.915	26.867	27.012	0	1176	34	0.9130621	0.020204961	0.9130621	369.98163	0	8.187256						96	7	2	NaN	NaN	NaN	0.41022	1	15887	15887		23.177	6.9508	1	13662			341	1224	212	216	264	264					0.024533971604796534
AFEDVAVYF	9	Unmodified	_AFEDVAVYF_					0	0	0		nc|ENSG00000240747|C9JBD0-2|KRBOX1;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF;ENSG00000083812|ENST00000196482|ZNF324	nc|ENSG00000240747|C9JBD0-2|KRBOX1	nc|ENSG00000240747|C9JBD0-2|KRBOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.4985890597998	1	1060.49859	1059.49131	1.3364	0.0014172	0.85137	0.00090287	2.1877	0.0023201	1060.4993173871246	31.573	0.21725	31.573	31.525	31.742	0	111	94	1.5529068	0.05485511	1.5529068	315.04843	0	11.128815						335	10	2	NaN	NaN	NaN	0.032764	1	11051	11051		55.494	34.938	1	65885			342	949	213	217	265	265					-0.036053410593012813
AFEDVAVYF	9	Unmodified	_AFEDVAVYF_					0	0	0		nc|ENSG00000240747|C9JBD0-2|KRBOX1;ENST00000463888.1_1_3:42982705-42984136:+|nuORF;ENSG00000240747|ENST00000383748|KRBOX1;ENST00000418093.2_1_3:42980387-43074030:+|nuORF;ENSG00000083812|ENST00000196482|ZNF324	nc|ENSG00000240747|C9JBD0-2|KRBOX1	nc|ENSG00000240747|C9JBD0-2|KRBOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.4985890597998	1	1060.49859	1059.49131	0.87267	0.00092547	1.7699	0.001877	2.6426	0.0028025	1060.499040157021	31.572	0.19307	31.568	31.519	31.712	-0.0044155	108	103	1.5546752	0.060160518	1.5531558	315.4072	0	12.20517						438	9	3	NaN	NaN	NaN	0.049695	1	10815	10815		47.04	17.442	1	69003			343	949	213	217	266	266					-0.036053410593012813
AFFSAMSQI	9	Unmodified	_AFFSAMSQI_					0	0	0			REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF	REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.24167797265005	2	501.241678	1000.4688	1.8701	0.00093735	-9.4726	-0.004748	-7.6025	-0.0038107	501.23674576329506	18.194	0.216	18.18	18.156	18.372	-0.01395	1326	58	0.8209676	0.035084903	0.81944823	333.35825	0	14.246429						217	10	3	NaN	NaN	NaN	0.11656	1	8427	8427		33.425	5.6365	1	25630	+		344	9388	214	218	267	267					-0.03141263728537069
AFFSAMSQI	9	Unmodified						0	0	0			REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF	REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.241678	1000.4688	1.8701	0.00093735	-9.4726	-0.004748	-7.6025	-0.0038107	501.23674576329506	18.194	0.216	18.18	18.156	18.372	-0.01395	1326	58	0.8209676	0.035084903	0.81944823	333.35825		14.246429	0.0035515	-5.3208E-05	-0.0016831	NaN	33.425	217	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25630	+		345	9388	214	218							-0.03141263728537069
AFGGKGLL	8	Unmodified	_AFGGKGLL_					0	0	0			REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.4508510062002	1	762.450851	761.443575	0.97106	0.00074038	5.4948	0.0041895	6.4659	0.0049299	762.4549791957716	37.819	0.26441	37.819	37.747	38.011	0	480	76	1.3339561	0.044801235	1.3339561	271.98633	0	9.134705						370	12	3	NaN	NaN	NaN	0.82332	1	4232	4232		6.0903	0.62448	1	54616	+		346	10690	215	219	268	268					0.05331049531196186
AFGGKGLL	8	Unmodified						0	0	0			REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	762.450851	761.443575	0.97106	0.00074038	5.4948	0.0041895	6.4659	0.0049299	762.4549791957716	37.819	0.26441	37.819	37.747	38.011	0	480	76	1.3339561	0.044801235	1.3339561	271.98633		9.134705	-0.00014816	0.00026411	-0.00013611	NaN	6.0903	370	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54616	+		347	10690	215	219							0.05331049531196186
AFGGKGLL	8	Unmodified						0	0	0			REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	REV__ENST00000465443.5_1_1:45266117-45270174:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	762.450851	761.443575	1.5689	0.0011962	4.9172	0.0037492	6.4861	0.0049454	762.4544449863845	37.816	0.28854	37.819	37.747	38.036	0.0028229	477	76	1.3357477	0.044805884	1.3342283	272.35162		9.135681	0.00014816	-0.00017625	0.00013611	NaN	6.0903	361	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52300	+		348	10690	215	219							0.05331049531196186
AFGKGAGL	8	Unmodified	_AFGKGAGL_					0	0	0		ENST00000496583.1_1_19:54694392-54694767:+|nuORF	ENST00000496583.1_1_19:54694392-54694767:+|nuORF	ENST00000496583.1_1_19:54694392-54694767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.4039008136002	1	720.403901	719.396624	1.446	0.0010417	4.9394	0.0035583	6.3853	0.0046	720.4070502126365	54.5	0.19257	54.5	54.476	54.668	0	570	112	1.2801172	0.066468716	1.2801172	261.27866	0	13.566589						315	9	2	NaN	NaN	NaN	0.84876	1	3583	3583		0.39566	0	1	31881			349	7293	216	220	269	269					0.02570189980053783
AFGTGGSS	8	Unmodified	_AFGTGGSS_					0	0	0			REV__CON__Q148H6	REV__CON__Q148H6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1533858941	2	342.153386	682.292219	1.3351	0.00045681	2.4692	0.00084484	3.8043	0.0013017	342.15491051755623	30.39	0.14479	30.383	30.359	30.504	-0.0064106	1500	40	0.71351165	0.024159491	0.7119922	291.55038	0	9.871887						142	7	3	NaN	NaN	NaN	0.84727	1	2789	2789		1.2418	0.84618	1	13775	+	+	350	8270	217	221	270	270					-0.06163556567332762
AFGTGGSS	8	Unmodified						0	0	0			REV__CON__Q148H6	REV__CON__Q148H6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.153386	682.292219	1.3351	0.00045681	2.4692	0.00084484	3.8043	0.0013017	342.15491051755623	30.39	0.14479	30.383	30.359	30.504	-0.0064106	1500	40	0.71351165	0.024159491	0.7119922	291.55038		9.871887	-0.0037118	-0.00081787	-0.0016889	NaN	1.2418	142	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13775	+	+	351	8270	217	221							-0.06163556567332762
AFGVVSLL	8	Unmodified	_AFGVVSLL_					0	0	0			REV__ENSG00000103546|ENST00000568943|SLC6A2	REV__ENSG00000103546|ENST00000568943|SLC6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4818167836003	1	805.481817	804.47454	1.2322	0.00099252	0.30256	0.00024371	1.5348	0.0012362	805.4812616838219	31.477	0.048254	31.477	31.452	31.501	0	441	40	1.3572328	0.023261905	1.3572328	276.47025	0	4.7384644						59	3	2	NaN	NaN	NaN	0.78605	1	4804	4804		11.091	0	1	4430.6	+		352	8922	218	222	271	271					0.06448202845444939
AFGVVSLL	8	Unmodified						0	0	0			REV__ENSG00000103546|ENST00000568943|SLC6A2	REV__ENSG00000103546|ENST00000568943|SLC6A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	805.481817	804.47454	1.2322	0.00099252	0.30256	0.00024371	1.5348	0.0012362	805.4812616838219	31.477	0.048254	31.477	31.452	31.501	0	441	40	1.3572328	0.023261905	1.3572328	276.47025		4.7384644	0.002738	0.00035877	0.00075972	NaN	11.091	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4430.6	+		353	8922	218	222							0.06448202845444939
AFICFGIL	8	Unmodified	_AFICFGIL_					0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.4746229157003	1	883.474623	882.467346	1.2741	0.0011256	0.81285	0.00071813	2.087	0.0018438	883.4751994970829	37.169	0.1929	37.169	37.097	37.29	0	351	46	1.4108255	0.026754975	1.4108255	286.9605	0	5.4419556						158	9	2	NaN	NaN	NaN	0.30174	1	5833	5833		41.978	0	1	12065	+		354	10254	219	223	272	272					0.02141146973360719
AFICFGIL	8	Unmodified						0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	883.474623	882.467346	1.2741	0.0011256	0.81285	0.00071813	2.087	0.0018438	883.4751994970829	37.169	0.1929	37.169	37.097	37.29	0	351	46	1.4108255	0.026754975	1.4108255	286.9605		5.4419556	0.036267	0.0017535	-0.0010237	NaN	41.978	158	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12065	+		355	10254	219	223							0.02141146973360719
AFICFGIL	8	Unmodified						0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	883.474623	882.467346	3.0562	0.0027	-4.7056	-0.0041573	-1.6494	-0.0014572	883.4708112053586	37.094	0.048222	37.096	37.072	37.121	0.0022507	345	31	1.4143922	0.017833829	1.4128729	287.686		3.6273804	-0.036267	-0.0031219	0.0010237	NaN	41.978	24	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247.1	+		356	10254	219	223							0.02141146973360719
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.5379530302	3	393.537953	1177.59203	1.5811	0.00062223	-2.3899	-0.0009405	-0.80874	-0.00031827	393.5369842723245	21.898	0.19279	21.898	21.85	22.043	0	1458	55	0.7395112	0.033399045	0.7395112	449.49893	0	20.300995						239	9	4	NaN	NaN	NaN	0.12866	1	15748	15748		23.177	12.315	1	52887			357	3677	220	224	273	273					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.803291312	2	589.803291	1177.59203	2.011	0.0011861	-2.6818	-0.0015818	-0.67087	-0.00039568	589.8018627513586	21.898	0.19279	21.898	21.85	22.043	0	1167	85	0.91857195	0.05145037	0.91857195	372.2289	0	20.848999						446	9	4	NaN	NaN	NaN	3.0773E-07	1	15749	15749		130.13	80.302	1	151520			358	3677	220	224	274	274					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.5379530302	3	393.537953	1177.59203	1.1619	0.00045726	-2.0122	-0.00079188	-0.85028	-0.00033462	393.5370507018097	22.042	0.24092	22.029	21.932	22.173	-0.013731	1458	40	0.7395112	0.024125457	0.73799175	449.49893	0	14.664215						218	11	3	NaN	NaN	NaN	0.33629	1	15175	15175		19.336	6.7667	1	35543			359	3677	220	224	275	275					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.803291312	2	589.803291	1177.59203	1.2394	0.00073099	-1.4895	-0.00087854	-0.25016	-0.00014755	589.8024917574595	22.042	0.26503	22.029	21.908	22.173	-0.013731	1164	64	0.9204082	0.03856069	0.91888875	372.973	0	15.625793						487	12	3	NaN	NaN	NaN	0.084037	1	15176	15176		38.131	13.731	1	147720			360	3677	220	224	276	276					0.010337357142361725
AFIKAETPWLF	11	Unmodified	_AFIKAETPWLF_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.8608061909	2	661.860806	1321.70706	1.2314	0.00081502	-4.3012	-0.0028468	-3.0698	-0.0020318	661.8586570242297	30.535	0.072403	30.535	30.511	30.584	0	1098	67	0.960755	0.040299058	0.960755	388.83066	0	16.30957						145	4	3	NaN	NaN	NaN	0.40559	1	19135	19135		21.85	14.263	1	14531			361	7678	221	225	277	277					0.05907420125367935
AFIKAETPWLF	11	Unmodified	_AFIKAETPWLF_					0	0	0		ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	ENST00000580048.1_1_18:72264114-72264453:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.8608061909	2	661.860806	1321.70706	1.3825	0.00091503	-5.7363	-0.0037967	-4.3538	-0.0028816	661.858603147068	30.559	0.096487	30.553	30.505	30.601	-0.0057564	1095	58	0.9625867	0.034798086	0.96106726	389.57196	0	14.083252						184	5	4	NaN	NaN	NaN	0.63477	1	18280	18280		11.739	1.3787	1	14641			362	7678	221	225	278	278					0.05907420125367935
AFIVPLKLIL	10	Unmodified	_AFIVPLKLIL_					0	0	0			REV__ENST00000540884.1_1_19:48232905-48244686:+|nuORF	REV__ENST00000540884.1_1_19:48232905-48244686:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.7598295448001	1	1126.75983	1125.75255	0.47516	0.00053539	5.041	0.00568	5.5162	0.0062154	1126.7648500059618	53.672	0.024075	53.671	53.647	53.671	-0.00059128	54	1129	1.5864743	0.6762909	1.5849549	321.61484	0	137.09975						2143	2	3	NaN	NaN	NaN	0.77832	1	13497	13497		0.92586	0	1	1643600	+		363	8338	222	226	279	279					0.1947069037842084
AFKKLRFY	8	Unmodified	_AFKKLRFY_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.21492176283334	3	358.214922	1071.62294	1.8674	0.00066894	6.7956	0.0024343	8.663	0.0031032	358.21731288419244	22.862	0.072309	22.848	22.824	22.896	-0.01354	1422	37	0.7617651	0.022239447	0.7602457	463.55438	0	13.533295						77	4	2	NaN	NaN	NaN	0.84692	1	11338	11338		0.79988	0	1	9374.4	+		364	8358	223	227	280	280					0.08998933819134436
AFLCAIGP	8	Unmodified	_AFLCAIGP_					0	0	0			REV__LANCL3|p.Y302C|1|0.48|ENSG00000147036|chrX:37667291-37667291|A/G|missense_variant	REV__LANCL3|p.Y302C|1|0.48|ENSG00000147036|chrX:37667291-37667291|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.4120226589	1	791.412023	790.404746	0.17261	0.0001366	-0.97897	-0.00077477	-0.80636	-0.00063816	791.410666016055	54.618	0.096214	54.617	54.593	54.689	-0.0006218	432	46	1.3625998	0.026834846	1.3610804	277.64642	0	5.467926						66	5	2	NaN	NaN	NaN	0.84651	1	4545	4545		1.6704	0	1	5232	+		365	13053	224	228	281	281					0.001160009051545785
AFLEINRQLLF	11	Unmodified	_AFLEINRQLLF_					0	0	0		ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	ENSG00000176401|ENST00000326282|EID2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3902621221001	2	682.390262	1362.76597	1.2812	0.00087427	-3.8642	-0.0026369	-2.583	-0.0017626	682.3878705601213	30.632	0.072411	30.632	30.608	30.68	0	1062	46	0.9827221	0.027436674	0.9827221	397.59702	0	11.100525						79	4	3	NaN	NaN	NaN	0.63949	1	19726	19726		15.311	8.881	1	7933.7			366	5025	225	229	282	282					0.09909896419708275
AFLGAPSF	8	Unmodified	_AFLGAPSF_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.4192165268001	1	809.419217	808.41194	2.0649	0.0016714	-2.8361	-0.0022956	-0.77114	-0.00062418	809.4168269478047	28.001	0.072388	28.001	27.953	28.026	0	453	88	1.3500742	0.05195284	1.3500742	274.98956	0	10.58197						99	4	2	NaN	NaN	NaN	0.40747	1	4870	4870		36.036	5.2452	1	8470.6			367	13682	226	230	283	283					7.056777246816637E-05
AFLGAPSF	8	Unmodified						0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.419217	808.41194	1.5259	0.0012351	-1.7822	-0.0014426	-0.2563	-0.00020746	809.4187818091094	28.001	0.072407	27.992	27.968	28.04	-0.0089798	453	64	1.3500742	0.037604928	1.3485547	274.98956		7.659546	-0.0048685	0.00045894	-0.00075972	NaN	36.036	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7094			368	13682	226	230							7.056777246816637E-05
AFLILPELR	9	Unmodified	_AFLILPELR_					0	0	0		ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.3316846107	2	536.331685	1070.64882	0.8685	0.0004658	-1.0674	-0.00057248	-0.19891	-0.00010668	536.3308286607663	30.872	0.21719	30.866	30.746	30.963	-0.0057545	1221	43	0.885486	0.025755763	0.88396657	359.23633	0	10.448975						236	10	3	NaN	NaN	NaN	0.18779	1	11307	11307		26.115	0.314	1	40707			369	289	227	231	284	284					0.11631783270740925
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2894854450001	2	499.289485	996.564418	2.0591	0.0010281	-0.25405	-0.00012684	1.8051	0.00090125	499.2893677263928	26.022	0.14482	26.022	25.998	26.143	0	1284	43	0.8468043	0.025817096	0.8468043	343.86758	0	10.483704						135	7	4	NaN	NaN	NaN	0.53317	1	8456	8456		8.2448	1.9946	1	16426			370	1242	228	232	285	285					0.06599832454003263
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.2894854450001	2	499.289485	996.564418	1.7941	0.00089577	0.25051	0.00012508	2.0446	0.0010208	499.2891387705616	26.07	0.14483	26.059	26.011	26.156	-0.011137	1284	37	0.8468043	0.02212894	0.8452849	343.86758	0	8.986053						124	7	3	NaN	NaN	NaN	0.33202	1	8283	8283		16.858	8.6135	1	16828			371	1242	228	232	286	286					0.06599832454003263
AFLQYCRKD	9	Unmodified	_AFLQYCRKD_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.2844084546	2	572.284408	1142.55426	1.8223	0.0010429	3.1381	0.0017959	4.9604	0.0028388	572.2852718831276	19.948	0.12027	19.948	19.876	19.997	0	1221	52	0.885486	0.03127992	0.885486	358.949	0	12.679932						101	6	2	NaN	NaN	NaN	0.64666	1	14545	14545		3.5698	0.35817	1	8083.9			372	741	229	233	287	287					-0.01131098542896325
AFLQYCRKD	9	Unmodified						0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.284408	1142.55426	1.5935	0.00091193	7.8741	0.0045062	9.4676	0.0054181	572.2910976293729	19.972	0.096313	19.958	19.885	19.982	-0.014141	1218	40	0.8873258	0.023914814	0.8858064	359.6948		9.694336	0.0046227	0.0027495	0.00016018	NaN	3.5698	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5023			373	741	229	233							-0.01131098542896325
AFLSRYQLER	10	Unmodified	_AFLSRYQLER_					0	0	0		ENST00000551925.1_1_12:58024960-58026164:-|nuORF	ENST00000551925.1_1_12:58024960-58026164:-|nuORF	ENST00000551925.1_1_12:58024960-58026164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.2349331209667	3	428.234933	1281.68297	1.1354	0.00048623	-3.6523	-0.001564	-2.5168	-0.0010778	428.2334287145482	20.694	0.072332	20.694	20.67	20.742	0	1473	67	0.7302302	0.040821016	0.7302302	443.44064	0	24.789062						77	4	3	NaN	NaN	NaN	0.75466	1	18455	18455		2.0359	0	1	5135.2			374	7550	230	234	288	288					0.0533957969171297
AFLVELGAM	9	Oxidation (M)	_AFLVELGAM(Oxidation (M))_		AFLVELGAM(1)		AFLVELGAM(47)	0	0	1			REV__ENSG00000125818|ENST00000335877|PSMF1	REV__ENSG00000125818|ENST00000335877|PSMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4964805698002	1	966.496481	965.489204	0.97107	0.00093853	3.1557	0.00305	4.1268	0.0039885	966.4984156366967	27.832	0.14485	27.822	27.75	27.895	-0.009552	237	103	1.4784646	0.060448408	1.4769452	300.32098	0	12.278931						301	7	4	NaN	NaN	NaN	0.049695	1	7352	7352		47.04	7.5814	1	27841	+		375	9404	231	235	289	289		648			0.0050790693126145925
AFLYNDQLIW	10	Unmodified	_AFLYNDQLIW_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.82696337355	2	641.826963	1281.63937	1.1587	0.00074366	-1.5688	-0.0010069	-0.41014	-0.00026324	641.825947532147	33.89	0.19303	33.89	33.842	34.035	0	1134	61	0.9387595	0.036674976	0.9387595	380.05164	0	14.847656						314	9	4	NaN	NaN	NaN	0.019347	1	18452	18452		63.958	43.445	1	53944			376	2335	232	236	290	290					0.009819701945616544
AFLYNDQLIW	10	Unmodified	_AFLYNDQLIW_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.82696337355	2	641.826963	1281.63937	1.4446	0.00092717	-1.5188	-0.00097479	-0.074193	-4.7619E-05	641.8258525552359	33.889	0.21717	33.887	33.839	34.056	-0.0012474	1134	61	0.9387595	0.036671042	0.93724006	380.05164	0	14.846069						316	10	4	NaN	NaN	NaN	0.10964	1	17632	17632		44.638	29.176	1	52775			377	2335	232	236	291	291					0.009819701945616544
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(58)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2676957579	2	532.267696	1062.52084	1.0953	0.000583	1.2026	0.00064011	2.2979	0.0012231	532.2680825812196	24.647	0.1688	24.634	24.586	24.755	-0.012394	1260	91	0.8615505	0.055292487	0.8600311	349.5598	0	22.434021						614	8	5	NaN	NaN	NaN	0.030696	1	10972	10972		58.2	36.365	1	202500			378	6090	233	237	292	292		619			-0.007921003148112504
AFNSRSYLI	9	Unmodified	_AFNSRSYLI_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7850985588501	2	535.785099	1069.55564	2.0532	0.0011001	-1.6902	-0.00090556	0.36304	0.00019451	535.7827524833409	21.85	0.072281	21.85	21.826	21.898	0	1221	37	0.885486	0.022081137	0.885486	359.241	0	8.958282						71	4	3	NaN	NaN	NaN	0.44834	1	11550	11550		11.739	0	1	5698.2			379	5444	234	238	293	293					0.023648588175319674
AFNSRSYLI	9	Unmodified						0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.785099	1069.55564	1.1467	0.00061436	-1.3434	-0.00071975	-0.19671	-0.00010539	535.7842564603382	21.874	0.12047	21.86	21.836	21.956	-0.013895	1221	52	0.885486	0.031290054	0.88396657	359.241		12.694336	0.0050213	0.00018204	-0.00075972	NaN	11.739	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8878.6			380	5444	234	238							0.023648588175319674
AFNWFSTLTT	10	Unmodified	_AFNWFSTLTT_					0	0	0		ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.2902137265	2	594.290214	1186.56587	0.79941	0.00047508	-1.0924	-0.0006492	-0.29298	-0.00017411	594.2898325066137	31.21	0.072395	31.205	31.157	31.229	-0.0050716	1284	40	0.8468043	0.023971736	0.8452849	343.11676	0	9.713104						75	4	2	NaN	NaN	NaN	0.74854	1	15443	15443		4.7291	0.31598	1	8801.9			381	5670	235	239	294	294					-0.019945782478998808
AFPEIFYTF	9	Unmodified	_AFPEIFYTF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1134.5506246302998	1	1134.55062	1133.54335	1.9942	0.0022626	-2.1533	-0.002443	-0.15906	-0.00018046	1134.5475834492427	36.229	0.072357	36.229	36.157	36.229	0	60	58	1.582944	0.033542633	1.582944	320.87247	0	6.7993164						127	4	2	NaN	NaN	NaN	0.12328	1	14220	14220		32.453	5.7212	1	14325			382	5625	236	240	295	295					-0.0180817764553467
AFPEIFYTF	9	Unmodified	_AFPEIFYTF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1134.5506246302998	1	1134.55062	1133.54335	1.5195	0.0017239	0.70601	0.00080101	2.2255	0.002525	1134.5522549211523	36.18	0.072308	36.181	36.132	36.205	0.0011024	63	49	1.5811787	0.028247952	1.5796592	320.5146	0	5.7260437						76	4	2	NaN	NaN	NaN	0.13602	1	13767	13767		30.61	7.2757	1	6662			383	5625	236	240	296	296					-0.0180817764553467
AFQIGLLRG	9	Unmodified	_AFQIGLLRG_					0	0	0			REV__tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	REV__tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.7927266257	2	487.792727	973.5709	1.6204	0.00079044	-5.285	-0.002578	-3.6645	-0.0017875	487.79044138591934	28.774	0.07239	28.774	28.725	28.798	0	1278	88	0.85049206	0.0534696	0.85049206	345.47617	0	21.719757						175	4	3	NaN	NaN	NaN	0.66529	1	7716	7716		2.1763	0.73677	1	15622	+		384	13524	237	241	297	297					0.08305770405377189
AFQRLGEL	8	Unmodified	_AFQRLGEL_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.5152421770002	1	933.515242	932.507966	1.0305	0.00096203	-1.3791	-0.0012875	-0.3486	-0.00032543	933.5152633979851	33.962	0.12063	33.962	33.938	34.059	0	279	46	1.4535767	0.026681185	1.4535767	295.4124	0	5.422455						98	6	2	NaN	NaN	NaN	0.75561	1	6668	6668		15.175	1.4383	1	7766.6			385	2479	238	242	298	298					0.03901204617341136
AFSGVGGG	8	Unmodified	_AFSGVGGG_					0	0	0		ENST00000483744.5_1_10:86007469-86008730:+|nuORF	ENST00000483744.5_1_10:86007469-86008730:+|nuORF	ENST00000483744.5_1_10:86007469-86008730:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.15847127200004	2	326.158471	650.30239	1.6174	0.00052754	5.0335	0.0016417	6.6509	0.0021692	326.1604182116296	39.018	0.16825	39.023	38.879	39.047	0.0046806	1533	94	0.6930556	0.057661235	0.6915362	283.46472	0	23.583862						245	8	3	NaN	NaN	NaN	0.8439	1	1967	1967		3.1533	0	1	30521			386	7222	239	243	299	299					-0.03674948842080994
AFTSSIFGSWQ	11	Unmodified	_AFTSSIFGSWQ_					0	0	0		nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.7931205562002	2	615.793121	1229.57169	1.466	0.00090276	3.8496	0.0023705	5.3156	0.0032733	615.7953337991542	25.684	0.14473	25.672	25.552	25.696	-0.0116	1200	67	0.89836043	0.04042524	0.896841	363.8604	0	16.373352						158	7	2	NaN	NaN	NaN	0.7072	1	16531	16531		6.9844	0.55443	1	17283			387	3528	240	244	300	300					-0.033914797362285753
AFTSSIFGSWQ	11	Unmodified						0	0	0		nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.793121	1229.57169	1.4706	0.00090559	4.0435	0.0024899	5.5141	0.0033955	615.7965088996679	25.732	0.1448	25.732	25.588	25.732	0	1200	73	0.89836043	0.044100344	0.89836043	363.8604		17.861816	0.03006	0.0001062	0.00075972	NaN	6.9844	194	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23303			388	3528	240	244							-0.033914797362285753
AFTSYHYGF	9	Unmodified	_AFTSYHYGF_					0	0	0			REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7428993931501	2	546.742899	1091.47125	0.9305	0.00050875	-9.9759	-0.0054542	-9.0454	-0.0049455	547.2384261911252	35.795	0.09647	35.795	35.747	35.844	0	1266	55	0.85786515	0.03317547	0.85786515	347.9464	0	13.455811						158	5	4	NaN	NaN	NaN	0.53206	1	12448	12448		8.2903	1.4271	1	13643	+		389	13568	241	245	301	301					-0.07083091999243152
AFTSYHYGF	9	Unmodified						0	0	0			REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	REV__tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.742899	1091.47125	0.9305	0.00050875	-9.9759	-0.0054542	-9.0454	-0.0049455	547.2384261911252	35.795	0.09647	35.795	35.747	35.844	0	1266	55	0.85786515	0.03317547	0.85786515	347.9464		13.455811	0.012553	0.00011673	0.00075972	NaN	8.2903	158	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13643	+		390	13568	241	245							-0.07083091999243152
AFVGGKGG	8	Unmodified	_AFVGGKGG_					0	0	0			REV__MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	REV__MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.99192	0.00068678	8.1012	0.005609	9.0931	0.0062958	692.3785852781683	30.776	0.19305	30.77	30.698	30.891	-0.0057545	732	85	1.1827712	0.05063796	1.1812518	241.59267	0	10.3433075						357	9	4	NaN	NaN	NaN	0.84887	1	2995	2995		0.32989	0	1	54861	+		391	13068	242	246	302	302					0.007296169459550583
AFVISVCVL	9	Unmodified	_AFVISVCVL_					0	0	0		ENSG00000145642|ENST00000389074|SHISAL2B	ENSG00000145642|ENST00000389074|SHISAL2B	ENSG00000145642|ENST00000389074|SHISAL2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.5379514540001	1	950.537951	949.530675	0.96053	0.00091302	-0.45652	-0.00043394	0.50401	0.00047908	950.5373244788902	35.746	0.19284	35.746	35.626	35.819	0.00053024	255	67	1.4678029	0.03909707	1.4662834	298.2258	0	7.943695						198	9	2	NaN	NaN	NaN	0.24994	1	6953	6953		22.126	0	1	14848			392	3523	243	247	303	303					0.05389087690582528
AFVSITVE	8	Unmodified	_AFVSITVE_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4665606499001	1	865.466561	864.459284	1.2794	0.0011073	-8.5221	-0.0073756	-7.2427	-0.0062683	865.4599382599207	35.723	0.096497	35.723	35.699	35.795	0	414	43	1.3733286	0.025025845	1.3733286	279.423	0	5.091858						91	5	2	NaN	NaN	NaN	0.76633	1	5587	5587		13.737	1.1492	1	6857.6			393	2829	244	248	304	304					0.02163291257579658
AFVSITVE	8	Unmodified						0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	865.466561	864.459284	0.92487	0.00080044	-5.7303	-0.0049594	-4.8055	-0.004159	865.461305362061	35.722	0.096405	35.722	35.698	35.794	0.00052643	411	43	1.3751161	0.02502048	1.3735967	279.78668		5.09079	-0.00046616	0.00097619	0.00013402	NaN	13.737	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7949.4			394	2829	244	248							0.02163291257579658
AFYLKDTE	8	Unmodified	_AFYLKDTE_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.7451077311	2	493.745108	985.475663	0.21374	0.00010553	1.1955	0.00059027	1.4092	0.0006958	493.74522744362935	33.478	0.072399	33.476	33.428	33.501	-0.0018501	1329	43	0.81912065	0.02586186	0.8176012	332.67685	0	10.503479						75	4	2	NaN	NaN	NaN	0.76406	1	7885	7885		14.042	0.57854	1	14643			395	4602	245	249	305	305					-0.017656275763329177
AFYWSLMF	8	Unmodified	_AFYWSLMF_					0	0	0		ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5;ENST00000547138.5_1_12:50529516-50531570:-|nuORF;ENST00000546676.1_1_12:50529513-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.7491388640001	2	532.749139	1063.48372	1.8203	0.00096975	-1.2312	-0.0006559	0.58911	0.00031385	532.7485671119846	26.698	0.096588	26.698	26.674	26.77	0	1212	46	0.8910048	0.02758503	0.8910048	361.5062	0	11.192017						57	5	2	NaN	NaN	NaN	0.84692	1	11268	11268		1.4396	0	1	4057.4			396	3225	246	250	306	306					-0.0454777186055253
AFYWSLMF	8	Unmodified						0	0	0		ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5;ENST00000547138.5_1_12:50529516-50531570:-|nuORF;ENST00000546676.1_1_12:50529513-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.749139	1063.48372	1.2184	0.0006491	-1.8296	-0.00097472	-0.6112	-0.00032562	532.7483055837303	26.722	0.072407	26.711	26.687	26.759	-0.010645	1212	40	0.8910048	0.023907006	0.88948536	361.5062		9.699768	0.0065755	-0.0002822	-0.00075972	NaN	1.4396	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4058.4			397	3225	246	250							-0.0454777186055253
AGAAASRL	8	Unmodified	_AGAAASRL_					0	0	0		ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	ENST00000515223.1_1_5:180659598-180660003:+|nuORF	ENST00000515223.1_1_5:180659598-180660003:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.4049634461002	1	716.404963	715.397687	1.8428	0.0013202	0.37689	0.00027001	2.2197	0.0015902	716.4057583506456	13.613	0.12003	13.613	13.565	13.685	0	642	40	1.2369217	0.023426294	1.2369217	252.48863	0	4.7819366						84	6	2	NaN	NaN	NaN	0.84455	1	3525	3525		2.7852	0	1	6724.8			398	3545	247	251	307	307					0.0286040434896222
AGAAASRL	8	Unmodified						0	0	0		ENST00000515223.1_1_5:180659598-180660003:+|nuORF;ENST00000515834.1_1_5:180657548-180660003:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	ENST00000515223.1_1_5:180659598-180660003:+|nuORF	ENST00000515223.1_1_5:180659598-180660003:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	716.404963	715.397687	1.31	0.00093852	0.76394	0.00054729	2.074	0.0014858	716.4049990001223	13.589	0.14387	13.579	13.555	13.699	-0.010098	642	49	1.2369217	0.028837085	1.2354022	252.48863		5.8864136	-0.016747	0.00010867	-0.00075972	NaN	2.7852	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7649.1			399	3545	247	251							0.0286040434896222
AGAAGKTR	8	Unmodified	_AGAAGKTR_					0	0	0		ENST00000608395.1_1_3:151987222-151987342:-|nuORF	ENST00000608395.1_1_3:151987222-151987342:-|nuORF	ENST00000608395.1_1_3:151987222-151987342:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.4158624834001	1	731.415862	730.408586	0.15056	0.00011012	1.0219	0.00074745	1.1725	0.00085757	731.4181073402003	54.594	0.072342	54.593	54.569	54.642	-0.0006218	1008	28	1.0156195	0.01643014	1.0141001	207.23488	0	3.3525238						51	4	2	NaN	NaN	NaN	0.84876	1	3686	3686		0.39566	0	1	4137.7			400	7789	248	252	308	308					0.0325980672323567
AGADHIITM	9	Unmodified	_AGADHIITM_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;ENST00000430496.1_1_9:127913263-127913512:+|nuORF	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.7314774271	2	464.731477	927.448402	1.1038	0.00051296	-0.31981	-0.00014863	0.78397	0.00036434	464.7314357831211	19.348	0.096004	19.348	19.348	19.444	0	1356	40	0.8024889	0.024034083	0.8024889	326.20258	0	9.769592						104	5	3	NaN	NaN	NaN	0.16171	1	6536	6536		27.789	1.6739	1	10067			401	1352	249	253	309	309					-0.01822434388361671
AGADHIITM	9	Unmodified						0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;ENST00000430496.1_1_9:127913263-127913512:+|nuORF	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	464.731477	927.448402	0.80756	0.0003753	0.1426	6.6269E-05	0.95015	0.00044157	464.7315709654361	19.394	0.16829	19.38	19.332	19.5	-0.014141	1356	43	0.8024889	0.025887072	0.8009695	326.20258		10.522797	0.016	0.00017965	-0.00075972	NaN	27.789	118	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12453			402	1352	249	253							-0.01822434388361671
AGAGAGNM	8	Unmodified	_AGAGAGNM_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.2769857405001	1	648.276986	647.269709	1.8117	0.0011745	6.0078	0.0038947	7.8196	0.0050692	648.2826077905601	36.567	0.048233	36.567	36.543	36.591	0	1146	52	0.93142134	0.031205654	0.93142134	190.50343	0	6.382492						37	3	2	NaN	NaN	NaN	0.84887	1	1988	1988		0.32989	0.054495	1	2221.5			403	5624	250	254	310	310					-0.06803479236589283
AGAGLALR	8	Unmodified	_AGAGLALR_					0	0	0			REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.4413489524002	1	728.441349	727.434072	0.62853	0.00045785	2.1138	0.0015398	2.7423	0.0019976	728.4432653849055	43.295	0.16761	43.306	43.235	43.402	0.010994	624	43	1.247731	0.025216103	1.2462115	254.61589	0	5.145706						115	8	2	NaN	NaN	NaN	0.84692	1	3646	3646		1.4396	0	1	8167.5	+		404	12876	251	255	311	311					0.05945281245669776
AGCGSGPP	8	Unmodified	_AGCGSGPP_					0	0	0			REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.2660867031999	1	645.266087	644.25881	1.9668	0.0012691	-6.4852	-0.0041847	-4.5185	-0.0029156	645.2618909268402	19.779	0.14434	19.765	19.741	19.885	-0.014141	1386	49	0.78399014	0.02961409	0.7824707	160.3649	0	6.057556						136	7	2	NaN	NaN	NaN	0.84727	1	1768	1768		1.2418	0	1	12183	+		405	12397	252	256	312	312					-0.07754881610890152
AGCGSGPP	8	Unmodified						0	0	0			REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	645.266087	644.25881	2.0904	0.0013489	-6.1748	-0.0039844	-4.0844	-0.0026355	645.2618440490007	19.756	0.16816	19.756	19.732	19.9	0	1386	52	0.78399014	0.031463265	0.78399014	160.3649		6.435791	-0.0044904	8.5922E-05	0.00075972	NaN	1.2418	151	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14315	+		406	12397	252	256							-0.07754881610890152
AGCGSGPP	8	Unmodified						0	0	0			REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	REV__ENST00000483218.1_1_2:237076144-237122398:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	645.266087	644.25881	1.9668	0.0012691	-6.4852	-0.0041847	-4.5185	-0.0029156	645.2618909268402	19.779	0.14434	19.765	19.741	19.885	-0.014141	1386	49	0.78399014	0.02961409	0.7824707	160.3649		6.057556	0.0044904	-0.00011442	-0.00075972	NaN	1.2418	136	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12183	+		407	12397	252	256							-0.07754881610890152
AGCLFNFI	8	Unmodified	_AGCLFNFI_					0	0	0			REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.4334863825001	1	884.433486	883.42621	0.90573	0.00080106	0.41529	0.00036729	1.321	0.0011683	884.4348333745688	33.334	0.16891	33.331	33.283	33.452	-0.0024757	369	67	1.4001206	0.039280415	1.3986012	284.7784	0	7.9894714						195	8	3	NaN	NaN	NaN	0.78605	1	5721	5721		11.091	1.9675	1	16797	+		408	13447	253	257	313	313					-0.020166140661331156
AGCSAAVK	8	Unmodified	_AGCSAAVK_					0	0	0			REV__ENSG00000149100|ENST00000531120|EIF3M	REV__ENSG00000149100|ENST00000531120|EIF3M	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3552360615	1	706.355236	705.34796	0.39052	0.00027585	5.3586	0.0037851	5.7491	0.0040609	706.3590654301238	31.982	0.26544	31.979	31.882	32.148	-0.0037594	759	94	1.1664921	0.056060433	1.1649727	238.1758	0	11.446487						414	12	3	NaN	NaN	NaN	0.84756	1	3258	3258		1.072	0.67635	1	32983	+		409	9989	254	258	314	314					-0.016500466513662104
AGCSAAVK	8	Unmodified						0	0	0			REV__ENSG00000149100|ENST00000531120|EIF3M	REV__ENSG00000149100|ENST00000531120|EIF3M	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	706.355236	705.34796	0.39052	0.00027585	5.3586	0.0037851	5.7491	0.0040609	706.3590654301238	31.982	0.26544	31.979	31.882	32.148	-0.0037594	759	94	1.1664921	0.056060433	1.1649727	238.1758		11.446487	-0.0024234	0.00015706	0.00014516	NaN	1.072	414	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32983	+		410	9989	254	258							-0.016500466513662104
AGDEFSLI	8	Unmodified	_AGDEFSLI_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4145250794	1	851.414525	850.407249	2.2842	0.0019448	-1.6162	-0.001376	0.66802	0.00056876	851.4130548378221	25.853	0.16891	25.853	25.805	25.974	0	453	67	1.3500742	0.039380908	1.3500742	274.7626	0	8.014648						302	8	3	NaN	NaN	NaN	0.54545	1	5390	5390		28.667	1.935	1	52718			411	586	255	259	315	315					-0.023938721561876264
AGDFGNIFV	9	Unmodified	_AGDFGNIFV_					0	0	0		ENST00000372981.1_1_X:99942062-99942296:-|nuORF;ENSG00000102362|ENST00000372989|SYTL4	ENST00000372981.1_1_X:99942062-99942296:-|nuORF	ENST00000372981.1_1_X:99942062-99942296:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4570585961002	1	939.457059	938.449782	1.5774	0.0014819	3.9914	0.0037498	5.5688	0.0052317	939.4607325580894	29.811	0.16894	29.811	29.739	29.908	0	318	112	1.4304334	0.06590462	1.4304334	290.68216	0	13.392639						344	8	3	NaN	NaN	NaN	0.18779	1	6783	6783		26.115	2.7805	1	33594			412	1376	256	260	316	316					-0.02190477027943416
AGDHKQAEL	9	Unmodified	_AGDHKQAEL_					0	0	0		ENST00000330714.7_1_21:42767619-42769596:+|nuORF	ENST00000330714.7_1_21:42767619-42769596:+|nuORF	ENST00000330714.7_1_21:42767619-42769596:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.7434307094	2	484.743431	967.472308	1.9019	0.00092194	-9.1837	-0.0044518	-7.2818	-0.0035298	484.73910225822164	21.537	0.14472	21.523	21.45	21.595	-0.014004	1356	34	0.8024889	0.020336509	0.8009695	326.00555	0	8.261566						102	7	2	NaN	NaN	NaN	0.27507	1	7391	7391		20.513	1.3497	1	10252			413	6504	257	261	317	317					-0.012728776303333689
AGDQAGLL	8	Unmodified	_AGDQAGLL_					0	0	0			REV__ENSG00000243509|ENST00000369996|TNFRSF6B	REV__ENSG00000243509|ENST00000369996|TNFRSF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.3886446799	1	744.388645	743.381368	1.8088	0.0013465	2.1693	0.0016148	3.9781	0.0029612	744.3877569431588	29.98	0.072393	29.98	29.932	30.004	0	996	46	1.0229213	0.027371764	1.0229213	208.65771	0	5.5833435						74	4	2	NaN	NaN	NaN	0.83211	1	3964	3964		4.9097	1.7564	1	4474.1	+		414	11349	258	262	318	318					-0.0005872160780882041
AGEGFSED	8	Unmodified	_AGEGFSED_					0	0	0		ENST00000367921.7_1_1:162737127-162740114:+|nuORF	ENST00000367921.7_1_1:162737127-162740114:+|nuORF	ENST00000367921.7_1_1:162737127-162740114:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.3104539384	1	811.310454	810.303177	1.8782	0.0015238	1.6745	0.0013585	3.5527	0.0028823	811.3117356951259	45.694	0.2401	45.694	45.622	45.862	0	627	49	1.24593	0.028812408	1.24593	253.76704	0	5.868408						208	11	2	NaN	NaN	NaN	0.84455	1	4893	4893		2.7852	0	1	25155			415	6627	259	263	319	319					-0.10956198983706145
AGEGFSED	8	Unmodified						0	0	0		ENST00000367921.7_1_1:162737127-162740114:+|nuORF	ENST00000367921.7_1_1:162737127-162740114:+|nuORF	ENST00000367921.7_1_1:162737127-162740114:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	811.310454	810.303177	0.22368	0.00018148	2.8975	0.0023507	3.1211	0.0025322	811.313098409001	45.644	0.1921	45.655	45.607	45.8	0.011345	624	46	1.247731	0.027013063	1.2462115	254.13388		5.5019226	-0.0194	0.00055694	0.00014081	NaN	2.7852	180	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18434			416	6627	259	263							-0.10956198983706145
AGEITDLLI	9	Unmodified	_AGEITDLLI_					0	0	0			REV__nc|ENSG00000185379|O75771-8|RAD51D	REV__nc|ENSG00000185379|O75771-8|RAD51D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5298891882002	1	944.529889	943.522613	1.5375	0.0014522	-1.2919	-0.0012202	0.24562	0.000232	944.5282296386382	29.691	0.12066	29.691	29.667	29.787	0	270	73	1.458913	0.042692184	1.458913	296.44653	0	8.674896						142	6	2	NaN	NaN	NaN	0.47587	1	6913	6913		10.605	0	1	15647	+		417	13197	260	264	320	320					0.04859231974819522
AGEPEPFL	8	Unmodified	_AGEPEPFL_					0	0	0		nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.4196104573001	1	859.41961	858.412334	2.4115	0.0020725	0.11525	9.9052E-05	2.5267	0.0021715	859.4185500470563	25.78	0.072414	25.769	25.745	25.817	-0.0116	399	43	1.382264	0.025015235	1.3807446	281.27203	0	5.090271						60	4	2	NaN	NaN	NaN	0.76633	1	5380	5380		13.737	0.73422	1	4421.3			418	3817	261	265	321	321					-0.022535682935654222
AGEPLGKRK	9	Unmodified	_AGEPLGKRK_					0	0	0		ENST00000469820.1_1_X:102884508-102884760:+|nuORF	ENST00000469820.1_1_X:102884508-102884760:+|nuORF	ENST00000469820.1_1_X:102884508-102884760:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.2878084233	2	478.287808	954.561064	1.6856	0.00080618	2.7408	0.0013109	4.4263	0.0021171	478.2900972510573	56.804	0.14397	56.804	56.684	56.828	0	1332	28	0.8172735	0.01662457	0.8172735	332.07455	0	6.7549133						73	7	2	NaN	NaN	NaN	0.68136	1	7205	7205		0.79988	0.40421	1	4661.3			419	7143	262	266	322	322					0.08196582399989438
AGEPQPQL	8	Unmodified	_AGEPQPQL_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.4257584677001	1	839.425758	838.418482	1.6766	0.0014074	0.11836	9.9355E-05	1.795	0.0015068	839.4258403236997	21.488	0.14456	21.488	21.464	21.609	0	543	127	1.296287	0.07533431	1.296287	263.876	0	15.335266						261	7	2	NaN	NaN	NaN	0.3434	1	5246	5246		39.459	0	1	24766	+		420	8944	263	267	323	323					-0.007190500620367857
AGETLNEVK	9	Unmodified	_AGETLNEVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4996516923001	1	960.499652	959.492375	1.4697	0.0014116	-1.0413	-0.0010002	0.42836	0.00041144	960.4992163459249	28.412	0.072426	28.412	28.412	28.484	0	279	55	1.4535767	0.03201914	1.4535767	295.2915	0	6.504608						97	4	2	NaN	NaN	NaN	0.27608	1	7322	7322		20.449	2.479	1	10279	+		421	10114	264	268	324	324					0.011008733096218748
AGETLNEVK	9	Unmodified						0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	960.499652	959.492375	1.4697	0.0014116	-1.0413	-0.0010002	0.42836	0.00041144	960.4992163459249	28.412	0.072426	28.412	28.412	28.484	0	279	55	1.4535767	0.03201914	1.4535767	295.2915		6.504608	0	0	0	NaN	20.449	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10279	+		422	10114	264	268							0.011008733096218748
AGFGGSST	8	Unmodified	_AGFGGSST_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15338589410004	2	342.153386	682.292219	1.0219	0.00034966	4.3752	0.001497	5.3972	0.0018467	342.1548991750581	31.018	0.16892	31.018	30.994	31.163	0	1509	88	0.70793515	0.053958714	0.70793515	289.27176	0	22.048248						168	8	2	NaN	NaN	NaN	0.84876	1	2878	2878		0.39566	0	1	17390	+		423	9562	265	269	325	325					-0.06163556567321393
AGFGGSST	8	Unmodified	_AGFGGSST_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.15338589410004	2	342.153386	682.292219	1.4731	0.00050404	4.2996	0.0014711	5.7727	0.0019752	342.1554876080773	31.017	0.16896	31.012	30.964	31.133	-0.0050716	1512	103	0.7060759	0.06324482	0.70455647	288.51205	0	25.842682						264	8	3	NaN	NaN	NaN	0.84876	1	2793	2793		0.39566	0	1	26943	+		424	9562	265	269	326	326					-0.06163556567321393
AGFTGLISF	9	Unmodified	_AGFTGLISF_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4825450651001	1	912.482545	911.475269	1.3938	0.0012718	0.48628	0.00044372	1.88	0.0017155	912.482412639655	32.78	0.12064	32.78	32.732	32.852	0	327	49	1.425088	0.028515935	1.425088	289.71985	0	5.7972717						164	6	3	NaN	NaN	NaN	0.04947	1	6250	6250		47.136	7.677	1	15268			425	3379	266	270	327	327					0.015989974944773166
AGFTGLISF	9	Unmodified						0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	912.482545	911.475269	1.3384	0.0012213	-0.73006	-0.00066617	0.60833	0.00055509	912.4809455293201	32.779	0.072414	32.776	32.751	32.824	-0.0031052	327	49	1.425088	0.028512955	1.4235686	289.71985		5.7966614	-0.0020824	-0.00051415	-0.00075972	NaN	47.136	142	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13578			426	3379	266	270							0.015989974944773166
AGGAAALF	8	Unmodified	_AGGAAALF_					0	0	0		ENST00000382592.4_1_13:21549450-21553917:-|nuORF	ENST00000382592.4_1_13:21549450-21553917:-|nuORF	ENST00000382592.4_1_13:21549450-21553917:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479	1	677.361702	676.354425	0.95091	0.00064411	9.0054	0.0060999	9.9563	0.006744	677.3677568182918	30.172	0.19303	30.166	30.118	30.311	-0.0064106	699	157	1.2026466	0.09405208	1.2011272	245.75822	0	19.219345						493	9	2	NaN	NaN	NaN	0.84651	1	2682	2682		1.6704	1.2747	1	100590			427	6743	267	271	328	328					0.0033021457165887114
AGGAAALF	8	Unmodified						0	0	0		ENST00000382592.4_1_13:21549450-21553917:-|nuORF	ENST00000382592.4_1_13:21549450-21553917:-|nuORF	ENST00000382592.4_1_13:21549450-21553917:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.361702	676.354425	1.3597	0.000921	8.914	0.006038	10.274	0.006959	677.3678108279513	30.439	0.19305	30.439	30.391	30.584	0	762	139	1.1646824	0.08319986	1.1646824	238.00032		17.001724	0.13642	-3.2923E-05	-0.018222	NaN	1.6704	501	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69086			428	6743	267	271							0.0033021457165887114
AGGAAPHL	8	Unmodified	_AGGAAPHL_					0	0	0		ENSG00000266265|ENST00000583337|KLF14	ENSG00000266265|ENST00000583337|KLF14	ENSG00000266265|ENST00000583337|KLF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3678496583001	1	693.36785	692.360573	0.90646	0.00062851	-5.9525	-0.0041273	-5.046	-0.0034987	693.3636087146474	29.497	0.36193	29.49	29.369	29.731	-0.0070648	789	52	1.1483859	0.030795574	1.1468664	234.56264	0	6.2901306						385	16	3	NaN	NaN	NaN	0.84651	1	3021	3021		1.6704	1.2747	1	43021			429	6165	268	272	329	329					0.002087328031848301
AGGAGGFR	8	Unmodified	_AGGAGGFR_					0	0	0		ENSG00000148798|ENST00000369849|INA	ENSG00000148798|ENST00000369849|INA	ENSG00000148798|ENST00000369849|INA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3474485672001	1	692.347449	691.340172	2.0669	0.001431	-1.7267	-0.0011955	0.3402	0.00023554	692.3462932461568	17.933	0.047926	17.933	17.885	17.933	0	708	46	1.1972283	0.027096987	1.1972283	244.5459	0	5.5348206						66	3	2	NaN	NaN	NaN	0.84887	1	3053	3053		0.32989	0	1	5564.9			430	3649	269	273	330	330					-0.017844378566223895
AGGAGVKM	8	Unmodified	_AGGAGVKM_					0	0	0			REV__ENST00000357814.7_2_17:72767432-72767837:-|nuORF	REV__ENST00000357814.7_2_17:72767432-72767837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.4411	0.0009949	3.7505	0.0025892	5.1916	0.0035841	690.3630989799719	27.783	0.16898	27.774	27.702	27.87	-0.009552	711	37	1.1954219	0.021678805	1.1939025	244.19055	0	4.4283447						81	8	2	NaN	NaN	NaN	0.84692	1	2940	2940		1.4396	1.0439	1	4787.1	+		431	11824	270	274	331	331					-0.004057427887460108
AGGASRSRLR	10	Unmodified	_AGGASRSRLR_					0	0	0		ENST00000416938.5_1_7:99704853-99705072:+|nuORF	ENST00000416938.5_1_7:99704853-99705072:+|nuORF	ENST00000416938.5_1_7:99704853-99705072:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7968632634	2	515.796863	1029.57917	1.9552	0.0010085	4.533	0.0023381	6.4883	0.0033466	515.7989215198597	55.196	0.09626	55.196	55.172	55.268	0	1269	55	0.8560222	0.033171892	0.8560222	347.45892	0	13.464447						167	5	3	NaN	NaN	NaN	0.73444	1	9773	9773		5.6942	0.50528	1	23168			432	6888	271	275	332	332					0.06556717374701293
AGGFGPRA	8	Unmodified	_AGGFGPRA_					0	0	0			REV__ENST00000255890.8_1_22:23733884-23742504:-|nuORF	REV__ENST00000255890.8_1_22:23733884-23742504:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3787486955999	1	732.378749	731.371472	1.6932	0.00124	-2.4505	-0.0017947	-0.75736	-0.00055467	732.3771139384827	30.101	0.14485	30.101	30.029	30.173	0	675	46	1.2170867	0.027062178	1.2170867	248.33781	0	5.5218506						104	7	2	NaN	NaN	NaN	0.84692	1	3769	3769		1.4396	0	1	8526.5	+		433	11521	272	276	333	333					-0.004958648225397155
AGGFGPRA	8	Unmodified						0	0	0			REV__ENST00000255890.8_1_22:23733884-23742504:-|nuORF	REV__ENST00000255890.8_1_22:23733884-23742504:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	732.378749	731.371472	1.6932	0.00124	-2.4505	-0.0017947	-0.75736	-0.00055467	732.3771139384827	30.101	0.14485	30.101	30.029	30.173	0	675	46	1.2170867	0.027062178	1.2170867	248.33781		5.5218506	0.0036934	-0.00074018	-0.00014235	NaN	1.4396	104	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8526.5	+		434	11521	272	276							-0.004958648225397155
AGGFSLSI	8	Unmodified	_AGGFSLSI_					0	0	0			REV__LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	REV__LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3984810847002	1	751.398481	750.391205	1.8199	0.0013674	4.2038	0.0031587	6.0236	0.0045262	751.4010963335096	36.155	0.096401	36.157	36.108	36.205	0.0011024	639	40	1.2387238	0.023426294	1.2372043	252.6348	0	4.7777405						89	5	2	NaN	NaN	NaN	0.84207	1	3985	3985		3.5732	0	1	6554.8	+		435	8935	273	277	334	334					0.00602466397583612
AGGGFEDA	8	Unmodified	_AGGGFEDA_					0	0	0		ENST00000175091.4_1_2:20251347-20251488:-|nuORF	ENST00000175091.4_1_2:20251347-20251488:-|nuORF	ENST00000175091.4_1_2:20251347-20251488:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.2944099437	1	723.29441	722.287133	1.5692	0.001135	-9.8152	-0.0070993	-8.246	-0.0059643	723.2870867421472	53.924	0.072186	53.924	53.9	53.972	0	774	34	1.1574414	0.01991582	1.1574414	236.22229	0	4.064621						50	4	2	NaN	NaN	NaN	0.84692	1	3634	3634		1.4396	0	1	3514.7			436	6220	274	278	335	335					-0.08511860429950957
AGGGFLST	8	Unmodified	_AGGGFLST_					0	0	0		ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3515308921	1	709.351531	708.344254	0.97999	0.00069516	8.3341	0.0059118	9.3141	0.006607	709.3574936704666	22.452	0.19275	22.438	22.39	22.583	-0.013733	714	55	1.1936152	0.032521605	1.1920958	243.69418	0	6.6397552						250	9	3	NaN	NaN	NaN	0.80071	1	3326	3326		9.1232	0.83292	1	28864			437	1452	275	279	336	336					-0.02158393153581528
AGGGFLST	8	Unmodified						0	0	0		ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.351531	708.344254	1.3554	0.00096146	9.2481	0.0065601	10.603	0.0075216	709.3581079362817	22.477	0.24097	22.477	22.429	22.67	0	714	52	1.1936152	0.030716538	1.1936152	243.69417		6.271225	0.019239	0.00034045	0.00075972	NaN	9.1232	280	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34782			438	1452	275	279							-0.02158393153581528
AGGGGSYA	8	Unmodified	_AGGGGSYA_					0	0	0			REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.2732805710999	1	639.273281	638.266004	1.8906	0.0012086	-4.7	-0.0030046	-2.8094	-0.001796	639.2707867385188	34.419	0.096375	34.419	34.346	34.443	-0.00064468	1149	43	0.92958635	0.025691867	0.9280669	190.18361	0	5.2562866						76	5	2	NaN	NaN	NaN	0.84876	1	1601	1601		0.39566	0	1	5550.1	+		439	11879	276	280	337	337					-0.06759825738822656
AGGGGSYA	8	Unmodified						0	0	0			REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	639.273281	638.266004	1.8906	0.0012086	-4.7	-0.0030046	-2.8094	-0.001796	639.2707867385188	34.419	0.096375	34.419	34.346	34.443	-0.00064468	1149	43	0.92958635	0.025691867	0.9280669	190.18361		5.2562866	-0.03714	-0.0003046	0.0001579	NaN	0.39566	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5550.1	+		440	11879	276	280							-0.06759825738822656
AGGGKAHG	8	Unmodified	_AGGGKAHG_					0	0	0			REV__nc|ENSG00000100883|P61011-2|SRP54	REV__nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3317985030001	1	654.331799	653.324522	1.265	0.00082775	-3.9545	-0.0025876	-2.6895	-0.0017598	654.3294578913266	46.438	0.26358	46.438	46.366	46.629	0	798	52	1.1429502	0.030805469	1.1429502	233.72263	0	6.2994385						186	12	2	NaN	NaN	NaN	0.84887	1	2149	2149		0.32989	0.32989	1	18188	+		441	8834	277	281	338	338					-0.01600724373668072
AGGGKAHG	8	Unmodified						0	0	0			REV__nc|ENSG00000100883|P61011-2|SRP54	REV__nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	654.331799	653.324522	1.265	0.00082775	-3.9545	-0.0025876	-2.6895	-0.0017598	654.3294578913266	46.438	0.26358	46.438	46.366	46.629	0	798	52	1.1429502	0.030805469	1.1429502	233.72263		6.2994385	0.0079294	-0.00044368	-0.00014632	NaN	0.32989	186	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18188	+		442	8834	277	281							-0.01600724373668072
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	1.2142	0.00076659	3.1597	0.0019949	4.3739	0.0027615	631.3560288922017	41.498	0.24065	41.498	41.329	41.57	0	783	145	1.1520087	0.08692896	1.1520087	235.75092	0	17.789444						829	11	4	NaN	NaN	NaN	0.84887	1	1459	1459		0.32989	0	1	94714			443	1707	278	282	339	339					0.014964462861485117
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	0.9048	0.00057124	6.3244	0.0039929	7.2292	0.0045642	631.3560704323139	39.863	0.31298	39.863	39.791	40.104	0	759	103	1.1664921	0.06151533	1.1664921	238.71484	0	12.588684						374	14	2	NaN	NaN	NaN	0.84887	1	1464	1464		0.32989	0	1	45725			444	1707	278	282	340	340					0.014964462861485117
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	0.91088	0.00057508	3.7328	0.0023567	4.6436	0.0029318	631.356636103904	41.665	0.24053	41.673	41.577	41.817	0.0082588	759	118	1.1664921	0.0705806	1.1649727	238.71486	0	14.443848						685	11	5	NaN	NaN	NaN	0.84887	1	1379	1379		0.32989	0	1	88618			445	1707	278	282	341	341					0.014964462861485117
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	1.1253	0.00071047	6.2525	0.0039475	7.3778	0.004658	631.3560958308846	39.837	0.28917	39.843	39.771	40.06	0.0060463	756	109	1.1683017	0.065126896	1.1667823	239.08516	0	13.327774						369	13	2	NaN	NaN	NaN	0.84887	1	1384	1384		0.32989	0	1	47991			446	1707	278	282	342	342					0.014964462861485117
AGGGKKGG	8	Unmodified	_AGGGKKGG_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	0.84243	0.00053187	7.9566	0.0050234	8.7991	0.0055553	631.3571231739268	41.424	0.21661	41.432	41.336	41.553	0.0082626	783	139	1.1520087	0.08329797	1.1504892	235.75089	0	17.046387						395	10	2	NaN	NaN	NaN	0.84727	1	1386	1386		1.2418	0	1	60705			447	1707	278	282	343	343					0.014964462861485117
AGGGRGGK	8	Unmodified	_AGGGRGGK_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.7395	0.0011469	-3.3796	-0.0022284	-1.6402	-0.0010815	659.3560526127159	26.408	0.096537	26.408	26.36	26.456	0	735	163	1.1809633	0.097711325	1.1809633	241.45815	0	19.97792						307	5	2	NaN	NaN	NaN	0.84727	1	2242	2242		1.2418	0	1	34049			448	6896	279	283	344	344					0.0082296451765842
AGGGRGGK	8	Unmodified	_AGGGRGGK_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.8469	0.0012177	-1.9298	-0.0012724	-0.082938	-5.4686E-05	659.35665723689	22.019	0.26516	22.019	21.85	22.115	0	819	148	1.1302601	0.08873534	1.1302601	231.09146	0	18.1427						1018	12	3	NaN	NaN	NaN	0.84455	1	2253	2253		2.7852	1.5433	1	140470			449	6896	279	283	345	345					0.0082296451765842
AGGGRGGK	8	Unmodified	_AGGGRGGK_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.9937	0.0013146	-1.9926	-0.0013138	0.0011653	7.6833E-07	659.3567640736546	23.272	0.21699	23.272	23.2	23.417	0	789	157	1.1483859	0.09412265	1.1483859	234.79741	0	19.244186						508	10	2	NaN	NaN	NaN	0.84455	1	2254	2254		2.7852	1.5433	1	112560			450	6896	279	283	346	346					0.0082296451765842
AGGGRGGK	8	Unmodified						0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	2.0318	0.0013397	0.34043	0.00022447	2.3723	0.0015642	659.3569842599371	23.272	0.14477	23.258	23.21	23.355	-0.013294	786	127	1.1501974	0.076071024	1.148678	235.16779		15.55336	-0.0068985	0.0012743	0.00014603	NaN	2.7852	582	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119500			451	6896	279	283							0.0082296451765842
AGGGRKGG	8	Unmodified	_AGGGRKGG_					0	0	0		ENST00000467713.5_1_3:9982844-9985032:+|nuORF	ENST00000467713.5_1_3:9982844-9985032:+|nuORF	ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	1.8294	0.0012062	-1.6076	-0.00106	0.22178	0.00014623	659.3566216061232	23.61	0.19271	23.61	23.538	23.73	0	765	187	1.1628724	0.11222327	1.1628724	237.75932	0	22.945007						705	9	5	NaN	NaN	NaN	0.84727	1	2257	2257		1.2418	0	1	114970			452	7124	280	284	347	347					0.008229645176697886
AGGGRKGG	8	Unmodified						0	0	0		ENST00000467713.5_1_3:9982844-9985032:+|nuORF	ENST00000467713.5_1_3:9982844-9985032:+|nuORF	ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.7342	0.0011435	-2.4919	-0.001643	-0.75768	-0.00049959	659.3565893567953	23.826	0.21704	23.813	23.765	23.982	-0.013048	792	151	1.1465741	0.09050262	1.1450547	234.427		18.504028	0.10181	-0.00033073	-0.0089089	NaN	1.2418	658	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80623			453	7124	280	284							0.008229645176697886
AGGGSNLF	8	Unmodified	_AGGGSNLF_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3467798652	1	722.34678	721.339503	1.4872	0.0010743	7.1763	0.0051838	8.6636	0.0062581	722.3515732482152	30.246	0.096498	30.246	30.198	30.294	0	651	49	1.2315145	0.028849363	1.2315145	251.34593	0	5.8880005						81	5	2	NaN	NaN	NaN	0.83582	1	3609	3609		4.4131	0.83987	1	4991.4	+		454	8385	281	285	348	348					-0.03231277296333701
AGGGSYKG	8	Unmodified	_AGGGSYKG_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3311298010001	1	696.33113	695.323853	1.8875	0.0013143	-1.4115	-0.00098286	0.476	0.00033145	696.3301392992616	18.125	0.19188	18.125	18.077	18.268	0	741	70	1.1773466	0.041588783	1.1773466	240.4581	0	8.493973						236	9	2	NaN	NaN	NaN	0.83211	1	3145	3145		4.9097	0	1	28293			455	899	282	286	349	349					-0.03599563813372697
AGGKRGGG	8	Unmodified	_AGGKRGGG_					0	0	0		ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	1.4743	0.00097207	-0.81557	-0.00053775	0.6587	0.00043432	659.3574164008993	28.532	0.14483	28.532	28.412	28.556	0	774	106	1.1574414	0.0633415	1.1574414	236.6489	0	12.950729						216	7	2	NaN	NaN	NaN	0.84727	1	2260	2260		1.2418	0	1	23650			456	7011	283	287	350	350					0.008229645176697886
AGGKRGGG	8	Unmodified	_AGGKRGGG_					0	0	0		ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	1.3814	0.00091081	-0.34531	-0.00022768	1.036	0.00068312	659.3580301096131	28.605	0.048265	28.605	28.581	28.629	0	783	85	1.1520087	0.050708532	1.1520087	235.53812	0	10.367798						125	3	2	NaN	NaN	NaN	0.84727	1	2262	2262		1.2418	0	1	13137			457	7011	283	287	351	351					0.008229645176697886
AGGKRGGG	8	Unmodified	_AGGKRGGG_					0	0	0		ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	1.5399	0.0010153	1.3758	0.00090717	2.9157	0.0019225	659.3569920506419	28.967	0.21723	28.967	28.894	29.112	0	783	160	1.1520087	0.09589672	1.1520087	235.53812	0	19.606918						747	10	3	NaN	NaN	NaN	0.84727	1	2267	2267		1.2418	0	1	127590			458	7011	283	287	352	352					0.008229645176697886
AGGKRGGG	8	Unmodified	_AGGKRGGG_					0	0	0		ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.5355	0.0010124	-1.3261	-0.0008744	0.20933	0.00013802	659.3574327180182	19.274	0.24033	19.26	19.164	19.404	-0.014143	750	109	1.1719203	0.06514788	1.1704009	239.60922	0	13.320038						262	11	2	NaN	NaN	NaN	0.84727	1	2179	2179		1.2418	0	1	17763			459	7011	283	287	353	353					0.008229645176697886
AGGKRGGG	8	Unmodified						0	0	0		ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	ENST00000442176.1_1_7:15734921-15734990:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.1791	0.00077747	-1.5226	-0.0010039	-0.34341	-0.00022643	659.3571250285299	28.628	0.048243	28.62	28.572	28.62	-0.0083504	783	103	1.1520087	0.061561465	1.1504892	235.53813		12.586777	0.043717	-0.00028617	-0.0034761	NaN	1.2418	136	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15201			460	7011	283	287							0.008229645176697886
AGGLDTAL	8	Unmodified	_AGGLDTAL_					0	0	0		nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3777456426	1	717.377746	716.370469	1.1303	0.00081086	0.28067	0.00020135	1.411	0.0010122	717.3781274009779	20.357	0.14423	20.357	20.309	20.453	0	651	52	1.2315145	0.030647635	1.2315145	251.37846	0	6.2558136						144	7	2	NaN	NaN	NaN	0.40747	1	3541	3541		36.036	16.752	1	14983			461	526	284	288	354	354					0.0009387601789967448
AGGLDTAL	8	Unmodified	_AGGLDTAL_					0	0	0		nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.3777456426	1	717.377746	716.370469	1.2521	0.00089824	-0.83424	-0.00059846	0.41788	0.00029978	717.377340261052	20.357	0.12045	20.343	20.295	20.415	-0.014141	651	52	1.2315145	0.030644298	1.229995	251.37846	0	6.255142						148	6	2	NaN	NaN	NaN	0.54545	1	3469	3469		28.667	1.935	1	14512			462	526	284	288	355	355					0.0009387601789967448
AGGLGFAA	8	Unmodified	_AGGLGFAA_					0	0	0		ENST00000469090.5_1_17:27944312-27944674:-|nuORF	ENST00000469090.5_1_17:27944312-27944674:-|nuORF	ENST00000469090.5_1_17:27944312-27944674:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3460515836999	1	663.346052	662.338775	1.5058	0.00099886	-2.9781	-0.0019755	-1.4723	-0.00097663	663.3446907828094	36.712	0.12033	36.712	36.663	36.784	0	765	55	1.1628724	0.032577395	1.1628724	237.73021	0	6.659912						83	6	2	NaN	NaN	NaN	0.84651	1	2370	2370		1.6704	0	1	4539.8			463	7134	285	289	356	356					-0.005900719453961756
AGGLGFFG	8	Unmodified	_AGGLGFFG_					0	0	0			REV__nc|nan|Q96N68|C18orf15	REV__nc|nan|Q96N68|C18orf15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3617016479001	1	725.361702	724.354425	1.2769	0.00092621	5.2325	0.0037954	6.5094	0.0047217	725.3652009461287	37.672	0.16833	37.675	37.603	37.771	0.0028229	723	52	1.1881942	0.030723095	1.1866747	242.48566	0	6.269928						115	8	2	NaN	NaN	NaN	0.84651	1	3593	3593		1.6704	0.42852	1	10159	+		464	13265	286	290	357	357					-0.018777854283371198
AGGLGFFG	8	Unmodified						0	0	0			REV__nc|nan|Q96N68|C18orf15	REV__nc|nan|Q96N68|C18orf15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.361702	724.354425	1.2769	0.00092621	5.2325	0.0037954	6.5094	0.0047217	725.3652009461287	37.672	0.16833	37.675	37.603	37.771	0.0028229	723	52	1.1881942	0.030723095	1.1866747	242.48566		6.269928	-0.011851	0.00010615	0.000144	NaN	1.6704	115	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10159	+		465	13265	286	290							-0.018777854283371198
AGGLVFGG	8	Unmodified	_AGGLVFGG_					0	0	0			REV__ENSG00000177370|ENST00000327158|TIMM22	REV__ENSG00000177370|ENST00000327158|TIMM22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3617016479002	1	677.361702	676.354425	1.5641	0.0010594	8.2712	0.0056026	9.8353	0.006662	677.3671391242418	28.098	0.16895	28.098	28.05	28.219	0	762	88	1.1646824	0.052482963	1.1646824	238.00034	0	10.724777						240	8	2	NaN	NaN	NaN	0.84651	1	2764	2764		1.6704	0	1	20895	+		466	10764	287	291	358	358					0.003302145716816085
AGGLVFGG	8	Unmodified						0	0	0			REV__ENSG00000177370|ENST00000327158|TIMM22	REV__ENSG00000177370|ENST00000327158|TIMM22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.361702	676.354425	1.5641	0.0010594	8.2712	0.0056026	9.8353	0.006662	677.3671391242418	28.098	0.16895	28.098	28.05	28.219	0	762	88	1.1646824	0.052482963	1.1646824	238.00034		10.724777	0.0048604	-0.0004314	-0.00014516	NaN	1.6704	240	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20895	+		467	10764	287	291							0.003302145716816085
AGGLVFGG	8	Unmodified						0	0	0			REV__ENSG00000177370|ENST00000327158|TIMM22	REV__ENSG00000177370|ENST00000327158|TIMM22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	677.361702	676.354425	0.84615	0.00057315	9.4606	0.0064083	10.307	0.0069814	677.3678775629895	28.097	0.14477	28.088	28.04	28.185	-0.0089798	759	91	1.1664921	0.05429554	1.1649727	238.37015		11.0952	-0.0048604	0.00037427	0.00014516	NaN	1.6704	241	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22022	+		468	10764	287	291							0.003302145716816085
AGGRGFGA	8	Unmodified	_AGGRGFGA_					0	0	0			REV__ENST00000460900.1_1_14:105954779-105954845:+|nuORF	REV__ENST00000460900.1_1_14:105954779-105954845:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3474485672	1	692.347449	691.340172	1.8241	0.0012629	-2.7448	-0.0019004	-0.92074	-0.00063747	692.3448896830121	17.93	0.192	17.916	17.868	18.06	-0.013786	705	49	1.1990347	0.028898835	1.1975152	244.91486	0	5.902878						154	9	2	NaN	NaN	NaN	0.84727	1	2983	2983		1.2418	0	1	11761	+		469	12262	288	292	359	359					-0.017844378566337582
AGGRGFGA	8	Unmodified						0	0	0			REV__ENST00000460900.1_1_14:105954779-105954845:+|nuORF	REV__ENST00000460900.1_1_14:105954779-105954845:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	692.347449	691.340172	1.8241	0.0012629	-2.7448	-0.0019004	-0.92074	-0.00063747	692.3448896830121	17.93	0.192	17.916	17.868	18.06	-0.013786	705	49	1.1990347	0.028898835	1.1975152	244.91486		5.902878	-0.0084037	-0.00035919	0.00014342	NaN	1.2418	154	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11761	+		470	12262	288	292							-0.017844378566337582
AGGRGPAK	8	Unmodified	_AGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.4052977970999	1	713.405298	712.398021	1.2669	0.00090384	-2.2862	-0.001631	-1.0193	-0.00072716	713.403463584669	37.407	0.0961	37.41	37.362	37.458	0.0028229	741	40	1.1773466	0.023509264	1.1758271	240.3468	0	4.79924						69	5	2	NaN	NaN	NaN	0.84887	1	3404	3404		0.32989	0	1	4677.5			471	6396	289	293	360	360					0.03031824068784772
AGGSGSSS	8	Unmodified	_AGGSGSSS_					0	0	0		ENSG00000185442|ENST00000327355|FAM174B	ENSG00000185442|ENST00000327355|FAM174B	ENSG00000185442|ENST00000327355|FAM174B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.2474597511	1	609.24746	608.240183	1.2507	0.00076201	7.4352	0.0045299	8.686	0.0052919	609.2530704929133	50.942	0.14376	50.942	50.822	50.966	0	678	52	1.2152823	0.030673742	1.2152823	248.89104	0	6.282013						127	7	2	NaN	NaN	NaN	0.84727	1	764	764		1.2418	0.91196	1	8514.9			472	5414	290	294	361	361					-0.07960719981088005
AGGSKGSL	8	Unmodified	_AGGSKGSL_					0	0	0			REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3624299294	1	676.36243	675.355153	1.7618	0.0011916	-4.9755	-0.0033653	-3.2137	-0.0021736	676.3560725449732	23.489	0.096539	23.476	23.427	23.524	-0.013294	729	79	1.184579	0.047030926	1.1830596	242.07333	0	9.610977						121	5	2	NaN	NaN	NaN	0.83913	1	2646	2646		3.9685	1.1833	1	7488.3	+		473	12038	291	295	362	362					0.0044900922071065
AGGSPIHA	8	Unmodified	_AGGSPIHA_					0	0	0			REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642803999	1	709.362764	708.355488	0.87545	0.00062101	-8.1767	-0.0058003	-7.3013	-0.0051793	709.3568791457907	24.381	0.2413	24.381	24.213	24.454	0	720	67	1.1900014	0.039769888	1.1900014	242.95634	0	8.119614						189	11	2	NaN	NaN	NaN	0.84207	1	3385	3385		3.5732	0	1	26318	+		474	8293	292	296	363	363					-0.010355710594467382
AGGSPIHA	8	Unmodified						0	0	0			REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.362764	708.355488	0.87545	0.00062101	-8.1767	-0.0058003	-7.3013	-0.0051793	709.3568791457907	24.381	0.2413	24.381	24.213	24.454	0	720	67	1.1900014	0.039769888	1.1900014	242.95634		8.119614	0.0064931	-0.0010288	0.00075972	NaN	3.5732	189	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26318	+		475	8293	292	296							-0.010355710594467382
AGGSPIHA	8	Unmodified						0	0	0			REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	REV__CPNE2|p.M17Wfs*14|1|0.23|ENSG00000140848|chr16:57110786-57110786|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.362764	708.355488	1.0408	0.00073833	-6.0738	-0.0043085	-5.033	-0.0035702	709.3585990908095	24.381	0.21719	24.368	24.32	24.537	-0.012749	720	67	1.1900014	0.039765716	1.1884819	242.95634		8.118744	-0.0064931	0.00046298	-0.00075972	NaN	3.5732	212	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27798	+		476	8293	292	296							-0.010355710594467382
AGHEDHAG	8	Unmodified	_AGHEDHAG_					0	0	0		ENST00000369046.8_1_6:107077528-107088354:+|nuORF	ENST00000369046.8_1_6:107077528-107088354:+|nuORF	ENST00000369046.8_1_6:107077528-107088354:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	793.3223560287	1	793.322356	792.31508	2.2767	0.0018061	3.3509	0.0026583	5.6275	0.0044645	793.3255650778813	25.781	0.1689	25.781	25.708	25.877	0	540	58	1.2980826	0.03411436	1.2980826	264.48935	0	6.9509277						196	8	3	NaN	NaN	NaN	0.84207	1	4649	4649		3.5732	0.41988	1	19542			477	6637	293	297	364	364					-0.08938537449853357
AGHGPGKD	8	Unmodified	_AGHGPGKD_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3529278756	1	738.352928	737.345651	1.5274	0.0011277	-9.4438	-0.0069729	-7.9165	-0.0058451	738.3459995391485	28.508	0.12068	28.508	28.484	28.605	0	690	43	1.2080631	0.025275707	1.2080631	246.4599	0	5.15654						90	6	2	NaN	NaN	NaN	0.84651	1	3870	3870		1.6704	0	1	5478.9			478	723	294	298	365	365					-0.03352759064819111
AGHLPASS	8	Unmodified	_AGHLPASS_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.3733289667001	1	739.373329	738.366053	1.2709	0.00093965	-1.7448	-0.00129	-0.47388	-0.00035037	739.3729537575897	28.218	0.14482	28.209	28.161	28.305	-0.0089779	561	94	1.2855089	0.055737615	1.2839894	262.25314	0	11.370865						179	7	3	NaN	NaN	NaN	0.83849	1	3816	3816		4.0537	0.48046	1	17888			479	7930	295	299	366	366					-0.013595884050005225
AGIFYEAQYK	10	Unmodified	_AGIFYEAQYK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2980387586	2	595.298039	1188.58152	0.75293	0.00044822	4.1197	0.0024525	4.8727	0.0029007	595.8008216601984	34.998	0.1689	34.998	34.926	35.094	-4.5776E-05	1170	52	0.91673553	0.031222522	0.9152161	371.44495	0	12.650818						198	8	3	NaN	NaN	NaN	0.68669	1	15502	15502		8.962	0.67169	1	21534			480	4204	296	300	367	367					-0.005222917308628894
AGIFYEAQYK	10	Unmodified						0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.298039	1188.58152	0.61503	0.00036613	3.2122	0.0019122	3.8273	0.0022784	595.8014134866551	34.999	0.19289	34.999	34.903	35.096	0	1176	61	0.9130621	0.036738336	0.9130621	369.95654		14.885742	0.00074486	-0.00050225	-0.001077	NaN	8.962	240	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22451			481	4204	296	300							-0.005222917308628894
AGKALCGA	8	Unmodified	_AGKALCGA_					0	0	0		ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.76028	0.00052487	6.5772	0.0045406	7.3374	0.0050655	690.3626534479888	33.334	0.28957	33.331	33.21	33.5	-0.0024757	744	109	1.1755381	0.065099	1.1740186	240.12883	0	13.297867						781	13	5	NaN	NaN	NaN	0.84727	1	2953	2953		1.2418	0	1	86617			482	7370	297	301	368	368					-0.004057427887460108
AGKLAPAN	8	Unmodified	_AGKLAPAN_					0	0	0		ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.4253645372	1	741.425365	740.418088	1.6663	0.0012355	-3.841	-0.0028478	-2.1747	-0.0016123	741.4223929090392	36.445	0.16875	36.446	36.398	36.567	0.0016785	621	91	1.2495319	0.054057837	1.2480124	254.90071	0	11.027649						231	8	3	NaN	NaN	NaN	0.8439	1	3847	3847		3.1533	0.69183	1	33077			483	4644	298	302	369	369					0.03749575008748707
AGKLAPAN	8	Unmodified						0	0	0		ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.425365	740.418088	1.3395	0.00099313	-3.1433	-0.0023305	-1.8038	-0.0013374	741.4230181864473	36.446	0.14476	36.446	36.398	36.543	0	621	91	1.2495319	0.054063678	1.2495319	254.90071		11.028809	9.3897E-05	0.00023285	0.00075972	NaN	3.1533	226	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31828			484	4644	298	302							0.03749575008748707
AGLAGPPC	8	Unmodified	_AGLAGPPC_					0	0	0			REV__ENST00000264716.8_1_2:28615948-28616017:+|nuORF	REV__ENST00000264716.8_1_2:28615948-28616017:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3337723379	1	685.333772	684.326496	1.9911	0.0013646	-11.618	-0.0079622	-9.6269	-0.0065976	685.3255009936177	53.314	0.14402	53.314	53.266	53.41	0	669	94	1.2206948	0.05595839	1.2206948	249.38882	0	11.432373						242	7	3	NaN	NaN	NaN	0.84651	1	2928	2928		1.6704	0	1	28762	+		485	11564	299	303	370	370					-0.028294316800838715
AGLAGPPC	8	Unmodified						0	0	0			REV__ENST00000264716.8_1_2:28615948-28616017:+|nuORF	REV__ENST00000264716.8_1_2:28615948-28616017:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	685.333772	684.326496	1.9911	0.0013646	-11.618	-0.0079622	-9.6269	-0.0065976	685.3255009936177	53.314	0.14402	53.314	53.266	53.41	0	669	94	1.2206948	0.05595839	1.2206948	249.38882		11.432373	0.0011311	-0.00026059	0.00075972	NaN	1.6704	242	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28762	+		486	11564	299	303							-0.028294316800838715
AGLAHGSG	8	Unmodified	_AGLAHGSG_					0	0	0		ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3314641520002	1	669.331464	668.324188	1.6454	0.0011014	5.8353	0.0039058	7.4808	0.0050071	669.3352877486836	46.222	0.35954	46.222	46.03	46.39	0	498	76	1.3232021	0.044825077	1.3232021	270.45792	0	9.162079						485	16	2	NaN	NaN	NaN	0.84876	1	2555	2555		0.39566	0	1	77284			487	7033	300	304	371	371					-0.02324144093506675
AGLAHGSG	8	Unmodified						0	0	0		ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	0.051363	3.4379E-05	6.2357	0.0041738	6.2871	0.0042082	669.3357394432073	46.172	0.35998	46.183	46.015	46.375	0.010719	495	85	1.3249949	0.05020678	1.3234755	270.82434		10.262085	-0.019592	0.00012806	0.00013669	NaN	0.39566	490	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83598			488	7033	300	304							-0.02324144093506675
AGLDDQQLQI	10	Unmodified	_AGLDDQQLQI_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7827528351501	2	550.782753	1099.55095	1.7074	0.00094039	-3.318	-0.0018275	-1.6106	-0.00088711	550.7805437282714	22.911	0.096464	22.911	22.863	22.959	0	1239	52	0.87444305	0.031300247	0.87444305	354.63782	0	12.694061						146	5	3	NaN	NaN	NaN	0.10581	1	12828	12828		45.165	2.8473	1	43269	+		489	11119	301	305	372	372					0.005159298840908377
AGLDDQQLQI	10	Unmodified						0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.782753	1099.55095	1.7074	0.00094039	-3.318	-0.0018275	-1.6106	-0.00088711	550.7805437282714	22.911	0.096464	22.911	22.863	22.959	0	1239	52	0.87444305	0.031300247	0.87444305	354.63782		12.694061	-0.016967	-0.00038401	0.00075972	NaN	45.165	146	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43269	+		490	11119	301	305							0.005159298840908377
AGLGSRAA	8	Unmodified	_AGLGSRAA_					0	0	0		ENST00000290552.7_1_16:55358558-55358915:+|nuORF	ENST00000290552.7_1_16:55358558-55358915:+|nuORF	ENST00000290552.7_1_16:55358558-55358915:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3893133819	1	702.389313	701.382037	0.94355	0.00066274	5.5559	0.0039024	6.4995	0.0045652	702.3924314694215	20.862	0.096447	20.862	20.838	20.935	0	648	46	1.2333171	0.027039051	1.2333171	251.8473	0	5.521469						67	5	2	NaN	NaN	NaN	0.78264	1	3242	3242		11.548	0	1	5344.6			491	6383	302	306	373	373					0.019401178318958046
AGLLSKSS	8	Unmodified	_AGLLSKSS_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.4355948725001	1	762.435595	761.428318	1.5722	0.0011987	3.3768	0.0025746	4.949	0.0037733	762.438456080887	28.653	0.12067	28.653	28.629	28.75	0	540	58	1.2980826	0.03411436	1.2980826	264.67203	0	6.955719						148	6	3	NaN	NaN	NaN	0.80692	1	4231	4231		8.2903	2.2	1	13686			492	2029	303	307	374	374					0.038061379433429465
AGLLTIVVC	9	Unmodified	_AGLLTIVVC_					0	0	0		ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.5223013898001	1	888.522301	887.515025	1.0661	0.00094725	-0.58806	-0.0005225	0.47804	0.00042475	888.5218041162813	31.258	0.096556	31.253	31.229	31.326	-0.0050716	291	61	1.446459	0.03559947	1.4449396	294.18265	0	7.240265						161	5	4	NaN	NaN	NaN	0.24994	1	5792	5792		22.126	1.5709	1	23332			493	1074	304	308	375	375					0.06676801173534841
AGLTAAAY	8	Unmodified	_AGLTAAAY_					0	0	0		ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3828310204999	1	737.382831	736.375555	1.5257	0.0011251	5.4544	0.004022	6.9801	0.005147	737.387335957385	29.763	0.26546	29.763	29.667	29.932	0	603	58	1.2603331	0.034198165	1.2603331	257.12973	0	6.9770355						272	12	3	NaN	NaN	NaN	0.81807	1	3852	3852		6.794	0.70367	1	26919			494	4963	305	309	376	376					-0.003178201194941721
AGPCCCCY	8	Unmodified	_AGPCCCCY_					0	0	0		ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.2292489657999	1	819.229249	818.221972	0.88584	0.00072571	5.8352	0.0047804	6.721	0.0055061	819.23511808023	31.862	0.36195	31.857	31.809	32.171	-0.0044155	576	82	1.2765218	0.048524976	1.2750024	259.95593	0	9.881805						590	16	4	NaN	NaN	NaN	0.84876	1	4879	4879		0.39566	0.39566	1	66439			495	6237	306	310	377	377					-0.1944096081497264
AGPCCCCY	8	Unmodified						0	0	0		ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	819.229249	818.221972	1.5936	0.0013055	5.638	0.0046188	7.2316	0.0059244	819.2342291536177	31.863	0.28963	31.863	31.815	32.104	0	576	91	1.2765218	0.053919435	1.2765218	259.95593		10.980377	0.002733	-9.4118E-05	0.00075972	NaN	0.39566	517	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62885			496	6237	306	310							-0.1944096081497264
AGPFQPKDDLS	11	Unmodified	_AGPFQPKDDLS_					0	0	0			REV__ENST00000538423.5_1_19:41903720-41916874:+|nuORF	REV__ENST00000538423.5_1_19:41903720-41916874:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.79057786725	2	587.790578	1173.5666	1.9656	0.0011553	-3.7759	-0.0022195	-1.8104	-0.0010641	587.788270034003	14.165	0.047895	14.154	14.13	14.177	-0.011219	1173	28	0.91489893	0.01652956	0.9133795	370.75525	0	6.6984863						40	3	2	NaN	NaN	NaN	0.77059	1	15044	15044		1.8901	0.38472	1	3219.9	+		497	11362	307	311	378	378					-0.013237835988547886
AGPPSGPN	8	Unmodified	_AGPPSGPN_					0	0	0			REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3311298010001	1	696.33113	695.323853	1.2887	0.00089736	0.054977	3.8282E-05	1.3437	0.00093564	696.3313635267215	14.333	0.19196	14.333	14.285	14.477	0	735	73	1.1809633	0.043394685	1.1809633	241.19675	0	8.862793						235	9	3	NaN	NaN	NaN	0.81251	1	3146	3146		7.5404	2.6306	1	22084	+		498	10050	308	312	379	379					-0.03599563813372697
AGPSIVHR	8	Unmodified	_AGPSIVHR_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.74049408995	2	418.740494	835.466435	1.0168	0.00042577	-2.4196	-0.0010132	-1.4028	-0.00058742	418.7389809257785	12.868	0.04805	12.868	12.82	12.868	0	1533	37	0.6930556	0.022328973	0.6930556	282.1715	0	9.091034						47	3	2	NaN	NaN	NaN	0.38377	1	5208	5208		37.302	13.968	1	4008.2			499	3442	309	313	380	380					0.042120686486555314
AGPSIVHR	8	Unmodified						0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	418.740494	835.466435	1.1261	0.00047156	-0.011047	-4.6258E-06	1.1151	0.00046693	418.74050760362803	12.894	0.11984	12.885	12.837	12.957	-0.00947	1533	37	0.6930556	0.022328973	0.6915362	282.17148		9.091034	0.0082492	0.00090176	-0.00075972	NaN	37.302	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6078.6			500	3442	309	313							0.042120686486555314
AGPSLSPF	8	Unmodified	_AGPSLSPF_					0	0	0		ENST00000586361.5_1_19:36386996-36387795:-|nuORF;ENST00000588497.2_1_19:36386996-36388558:-|nuORF	ENST00000586361.5_1_19:36386996-36387795:-|nuORF	ENST00000586361.5_1_19:36386996-36387795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.3984810847	1	775.398481	774.391205	1.5173	0.0011765	4.1957	0.0032533	5.713	0.0044298	775.4020394598721	32.611	0.19308	32.611	32.563	32.756	0	549	61	1.292695	0.035923243	1.292695	263.49542	0	7.3223877						307	9	4	NaN	NaN	NaN	0.72043	1	4423	4423		17.78	4.0433	1	40943			501	7701	310	314	381	381					-0.005015336024257522
AGPSLSPF	8	Unmodified						0	0	0		ENST00000586361.5_1_19:36386996-36387795:-|nuORF;ENST00000588497.2_1_19:36386996-36388558:-|nuORF	ENST00000586361.5_1_19:36386996-36387795:-|nuORF	ENST00000586361.5_1_19:36386996-36387795:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.398481	774.391205	1.1872	0.00092054	4.9952	0.0038732	6.1824	0.0047938	775.4023775488489	32.61	0.21721	32.607	32.558	32.776	-0.0031052	546	61	1.294491	0.035919428	1.2929716	263.8615		7.321594	-0.0020875	0.00025386	0.00013831	NaN	17.78	294	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41148			502	7701	310	314							-0.005015336024257522
AGPSNEML	8	Unmodified	_AGPSNEML_					0	0	0			REV__ENST00000507454.1_1_4:128812246-128813710:+|nuORF	REV__ENST00000507454.1_1_4:128812246-128813710:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.3712800562001	1	818.37128	817.364004	1.5584	0.0012754	2.4351	0.0019928	3.9936	0.0032682	818.373559206847	32.852	0.19304	32.852	32.78	32.973	0	468	70	1.3411216	0.041203856	1.3411216	273.11606	0	8.391083						170	9	2	NaN	NaN	NaN	0.78264	1	4979	4979		11.548	0	1	16584	+		503	9851	311	315	382	382					-0.05198385205108025
AGPSVHSH	8	Unmodified	_AGPSVHSH_					0	0	0			REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.3794769771001	1	791.379477	790.372201	1.3794	0.0010916	0.39422	0.00031198	1.7736	0.0014036	791.3799424952372	34.131	0.096432	34.131	34.107	34.203	0	489	46	1.3285799	0.026880741	1.3285799	270.71466	0	5.4772644						77	5	2	NaN	NaN	NaN	0.80071	1	4627	4627		9.1232	2.3292	1	6279.4	+		504	9108	312	316	383	383					-0.03137070173477241
AGPSVHSH	8	Unmodified						0	0	0			REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	791.379477	790.372201	1.3794	0.0010916	0.39422	0.00031198	1.7736	0.0014036	791.3799424952372	34.131	0.096432	34.131	34.107	34.203	0	489	46	1.3285799	0.026880741	1.3285799	270.71466		5.4772644	0.001238	-0.00019796	0.00075972	NaN	9.1232	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6279.4	+		505	9108	312	316							-0.03137070173477241
AGPTGRDL	8	Unmodified	_AGPTGRDL_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4104427545	1	786.410443	785.403166	1.3347	0.0010496	-10.101	-0.0079433	-8.766	-0.0068937	786.4025386363802	26.987	0.19308	26.977	26.953	27.146	-0.010126	486	73	1.3303722	0.043020606	1.3288528	271.10916	0	8.766937						250	9	3	NaN	NaN	NaN	0.78967	1	4484	4484		10.605	3.0646	1	35998			506	3435	313	317	384	384					0.0018808314075613453
AGPTGRDL	8	Unmodified						0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	786.410443	785.403166	1.5748	0.0012385	-9.2147	-0.0072465	-7.6399	-0.0060081	786.4029717103901	26.988	0.21717	26.988	26.94	27.157	0	486	82	1.3303722	0.04841113	1.3303722	271.10916		9.865448	0.0054504	0.000331	0.00075972	NaN	10.605	297	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37414			507	3435	313	317							0.0018808314075613453
AGQGHGTG	8	Unmodified	_AGQGHGTG_					0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.6566270748	2	342.656627	683.298701	1.6344	0.00056004	-6.6614	-0.0022826	-5.027	-0.0017225	342.65506211194196	32.611	0.072365	32.611	32.539	32.611	0	1503	52	0.711653	0.031600058	0.711653	290.7826	0	12.911835						54	4	2	NaN	NaN	NaN	0.84727	1	2901	2901		1.2418	0	1	3033.6			508	4582	314	318	385	385					-0.055616186159568315
AGSAHGGL	8	Unmodified	_AGSAHGGL_					0	0	0		IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.331464152	1	669.331464	668.324188	1.3591	0.00090967	-11.017	-0.0073743	-9.6583	-0.0064646	669.3237334014336	28.967	0.16897	28.967	28.918	29.087	0	678	64	1.2152823	0.037899256	1.2152823	248.39958	0	7.746475						177	8	3	NaN	NaN	NaN	0.82797	1	2545	2545		5.4659	2.3125	1	14089			509	7825	315	319	386	386					-0.023241440935294122
AGSAHGGL	8	Unmodified						0	0	0		IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	IRX4|p.S108A|1|0.27|ENSG00000113430|chr5:1880810-1880810|A/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	1.1479	0.00076834	-9.913	-0.0066351	-8.7651	-0.0058667	669.3240302090984	28.966	0.16894	28.958	28.91	29.079	-0.0077229	675	82	1.2170867	0.048743248	1.2155672	248.76837		9.962952	-0.0042463	0.00040428	0.00014245	NaN	5.4659	176	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17421			510	7825	315	319							-0.023241440935294122
AGSHGVVP	8	Unmodified	_AGSHGVVP_					0	0	0			REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3784143446001	1	723.378414	722.371138	1.5018	0.0010864	-6.2332	-0.0045089	-4.7314	-0.0034226	723.3743246019272	29.739	0.21721	29.739	29.691	29.908	0	624	106	1.247731	0.06305742	1.247731	254.64893	0	12.8693695						367	10	4	NaN	NaN	NaN	0.84455	1	3642	3642		2.7852	1.1148	1	60547	+		511	8964	316	320	387	387					-0.0011528454238032282
AGSPSGFH	8	Unmodified	_AGSPSGFH_					0	0	0			REV__ENSG00000138347|ENST00000358913|MYPN	REV__ENSG00000138347|ENST00000358913|MYPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.17465265245	2	380.174653	758.334752	1.4379	0.00054665	6.8312	0.0025971	8.2691	0.0031437	380.1779140954737	53.672	0.064808	53.671	53.647	53.712	-0.00059128	1476	25	0.72837335	0.014855325	0.7268539	297.0372	0	6.058136						29	3	2	NaN	NaN	NaN	0.8439	1	4115	4115		3.1533	1.7138	1	1381.2	+		512	9725	317	321	388	388					-0.05408161439095238
AGSPSGFH	8	Unmodified						0	0	0			REV__ENSG00000138347|ENST00000358913|MYPN	REV__ENSG00000138347|ENST00000358913|MYPN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	380.174653	758.334752	1.4379	0.00054665	6.8312	0.0025971	8.2691	0.0031437	380.1779140954737	53.672	0.064808	53.671	53.647	53.712	-0.00059128	1476	25	0.72837335	0.014855325	0.7268539	297.0372		6.058136	-0.066004	-0.00074392	-0.0016881	NaN	3.1533	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1381.2	+		513	9725	317	321							-0.05408161439095238
AGSSKSSS	8	Unmodified	_AGSSKSSS_					0	0	0		ENSG00000143107|ENST00000370017|FNDC7	ENSG00000143107|ENST00000370017|FNDC7	ENSG00000143107|ENST00000370017|FNDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3315237315	1	710.331524	709.324247	0.39922	0.00028358	-3.7364	-0.0026541	-3.3372	-0.0023705	710.3287809993126	39.791	0.19292	39.791	39.694	39.887	0	738	49	1.179155	0.02893591	1.179155	240.73566	0	5.907547						176	9	2	NaN	NaN	NaN	0.84512	1	3407	3407		2.4615	1.2197	1	16452			514	3397	318	322	389	389					-0.04204188884182258
AGSSSGRG	8	Unmodified	_AGSSSGRG_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__ENSG00000198911|ENST00000361204|SREBF2;ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3165423693	1	678.316542	677.309266	2.0561	0.0013947	-6.9623	-0.0047227	-4.9062	-0.003328	678.3121615878215	17.162	0.64787	17.149	16.98	17.628	-0.013569	690	139	1.2080631	0.08314645	1.2065437	246.85826	0	16.990326						1281	28	4	NaN	NaN	NaN	0.84455	1	2702	2702		2.7852	0	1	378990			515	11204;3273	319	323	390	390					-0.042296359615306756
AGSSSGRG	8	Unmodified						0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__ENSG00000198911|ENST00000361204|SREBF2;ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	678.316542	677.309266	2.1297	0.0014446	-7.1096	-0.0048226	-4.98	-0.003378	678.3118891035158	17.141	0.64762	17.141	16.997	17.645	0	693	133	1.2062578	0.07953143	1.2062578	246.48936		16.251617	-0.0035199	-4.0605E-05	-0.00014293	NaN	2.7852	1198	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362100			516	11204;3273	319	323							-0.042296359615306756
AGTDAAEF	8	Unmodified	_AGTDAAEF_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.3362747584	1	781.336275	780.328998	2.1032	0.0016433	-1.0592	-0.0008276	1.044	0.0008157	781.3355711756327	16.494	0.33574	16.494	16.35	16.686	0	600	55	1.2621325	0.032393098	1.2621325	257.2317	0	6.601944						478	15	3	NaN	NaN	NaN	0.62311	1	4490	4490		23.85	6.0701	1	84211			517	13904	320	324	391	391					-0.06995304741428754
AGTLVVVVL	9	Unmodified	_AGTLVVVVL_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.5658807640001	1	870.565881	869.558604	0.9813	0.00085428	-0.094213	-8.2019E-05	0.88709	0.00077227	870.5655443286847	31.718	0.096567	31.718	31.694	31.79	0	348	52	1.412609	0.030319095	1.412609	287.38873	0	6.1683044						103	5	2	NaN	NaN	NaN	0.14301	1	5659	5659		29.598	4.6373	1	12724			518	3634	321	325	392	392					0.11860733942330626
AGTPKFFLTD	10	Unmodified	_AGTPKFFLTD_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7873068968	2	548.787307	1095.56006	1.0677	0.00058592	-7.2439	-0.0039754	-6.1763	-0.0033894	549.2860055655495	20.622	0.072229	20.622	20.573	20.646	0	1224	64	0.883646	0.03865248	0.883646	358.38632	0	15.676544						124	4	3	NaN	NaN	NaN	0.77024	1	12649	12649		2.8895	0.29002	1	13556			519	2401	322	326	393	393					0.016103232404248047
AGVELEPR	8	Unmodified	_AGVELEPR_					0	0	0			REV__ENST00000597275.5_1_X:48911128-48919505:+|nuORF	REV__ENST00000597275.5_1_X:48911128-48919505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.73761705000004	2	435.737617	869.460681	1.5207	0.00066263	-1.6048	-0.00069928	-0.084111	-3.665E-05	435.7364798724446	16.611	0.11997	16.598	16.574	16.693	-0.012993	1404	40	0.77288127	0.024075806	0.7713618	314.47308	0	9.796051						104	6	2	NaN	NaN	NaN	0.75561	1	5518	5518		15.175	1.1338	1	10768	+		520	12949	323	327	394	394					0.02072925346340071
AGVGDMVM	8	Unmodified	_AGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	779.3426224647002	1	779.342622	778.335346	2.1108	0.0016451	-1.1459	-0.00089305	0.96493	0.00075201	779.3420781102159	23.248	0.14467	23.248	23.224	23.369	0	555	61	1.2891023	0.035934687	1.2891023	262.73993	0	7.3240967						199	7	4	NaN	NaN	NaN	0.62311	1	4471	4471		23.85	10.113	1	20927			521	2468	324	328	395	395					-0.06268826105895187
AGVGDMVM	8	Oxidation (M)	_AGVGDMVM(Oxidation (M))_		AGVGDMVM(1)		AGVGDM(-37)VM(37)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3375370868002	1	795.337537	794.330261	1.8489	0.0014705	0.57511	0.00045741	2.424	0.0019279	795.337827641707	18.842	0.19221	18.828	18.78	18.972	-0.014059	567	73	1.2819146	0.043144703	1.2803952	261.18378	0	8.790527						203	9	2	NaN	NaN	NaN	0.09307	1	4584	4584		65.672	41.822	2	21511			522	2468	324	329	396	396		286;287			-0.07513129968504018
AGVGDMVM	8	Oxidation (M)						0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.337537	794.330261	2.2799	0.0018133	-2.1836	-0.0017367	0.096296	7.6588E-05	795.3362930684845	18.82	0.19206	18.82	18.796	18.988	0	567	70	1.2819146	0.04133153	1.2819146	261.1838		8.421112	-0.0036596	-0.00085333	0.00075972	NaN	65.672	252	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25735			523	2468	324	329				286;287			-0.07513129968504018
AGVPHANG	8	Unmodified	_AGVPHANG_					0	0	0			REV__ENST00000494911.5_1_11:32457087-32459470:+|nuORF	REV__ENST00000494911.5_1_11:32457087-32459470:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3580132535001	1	722.358013	721.350737	1.502	0.001085	5.8995	0.0042615	7.4015	0.0053465	722.3621326549254	26.336	0.21713	26.324	26.228	26.445	-0.011137	645	112	1.2351195	0.06673205	1.2336	252.08163	0	13.619675						270	10	2	NaN	NaN	NaN	0.82797	1	3538	3538		5.4659	1.8926	1	27774	+		524	12492	325	330	397	397					-0.021084552021875425
AGVPHANG	8	Unmodified						0	0	0			REV__ENST00000494911.5_1_11:32457087-32459470:+|nuORF	REV__ENST00000494911.5_1_11:32457087-32459470:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.358013	721.350737	1.502	0.001085	5.8995	0.0042615	7.4015	0.0053465	722.3621326549254	26.336	0.21713	26.324	26.228	26.445	-0.011137	645	112	1.2351195	0.06673205	1.2336	252.08163		13.619675	0.0063612	0.00063915	-0.00075972	NaN	5.4659	270	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27774	+		525	12492	325	330							-0.021084552021875425
AGWGVQIFF	9	Unmodified	_AGWGVQIFF_					0	0	0		OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7661775242001	2	512.766178	1023.5178	2.0856	0.0010694	-11.404	-0.0058476	-9.3184	-0.0047782	512.7592143642703	19.708	0.16813	19.708	19.636	19.804	0	1287	73	0.8449601	0.044248343	0.8449601	342.9957	0	17.961761						226	8	4	NaN	NaN	NaN	0.45297	1	9498	9498		11.548	3.2582	1	18916			526	8081	326	331	398	398					0.0069839262271216285
AGWGVQIFF	9	Unmodified						0	0	0		OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	OR2T33|p.C95W|1|0.15|ENSG00000177212|chr1:248273530-248273530|A/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.766178	1023.5178	1.2955	0.00066431	-11.125	-0.0057047	-9.8298	-0.0050404	512.7599433728475	19.731	0.096241	19.717	19.693	19.789	-0.014141	1287	52	0.8449601	0.03135097	0.84344065	342.9957		12.726349	0.0044314	0.00011168	-0.00075972	NaN	11.548	143	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13648			527	8081	326	331							0.0069839262271216285
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;ENSG00000108518|ENST00000225655|PFN1;CON__P02584	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.777470492	2	589.77747	1177.54039	1.2914	0.00076166	-1.4962	-0.00088244	-0.20479	-0.00012078	590.2782695177715	36.952	0.21675	36.952	36.928	37.145	0	1179	46	0.9112251	0.027558208	0.9112251	369.25195	0	11.167297						230	10	3	NaN	NaN	NaN	0.080496	1	15735	15735		48.65	25.533	1	40537		+	528	190	327	332	399	399					-0.041280527703293046
AGWNAYIDNL	10	Acetyl (Protein N-term)						1	0	0		PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;ENSG00000108518|ENST00000225655|PFN1;CON__P02584	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.77747	1177.54039	0.85914	0.0005067	-0.57437	-0.00033875	0.28478	0.00016795	589.7772473644744	36.974	0.16825	36.976	36.928	37.096	0.0022507	1176	61	0.9130621	0.036750257	0.91154265	369.99637		14.892151	0.012038	0.00057754	0.00015879	NaN	48.65	270	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31558		+	529	190	327	332							-0.041280527703293046
AHAACSGC	8	Unmodified	_AHAACSGC_					0	0	0			REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.2599554678001	1	719.259955	718.252679	1.7326	0.0012462	7.8946	0.0056782	9.6272	0.0069245	719.265777815496	25.95	0.16891	25.95	25.829	25.998	0	708	70	1.1972283	0.04154861	1.1972283	244.36787	0	8.48056						168	8	2	NaN	NaN	NaN	0.84692	1	3562	3562		1.4396	0.19772	1	14140	+		530	10263	328	333	400	400					-0.11771723114054566
AHAACSGC	8	Unmodified						0	0	0			REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.259955	718.252679	1.7326	0.0012462	7.8946	0.0056782	9.6272	0.0069245	719.265777815496	25.95	0.16891	25.95	25.829	25.998	0	708	70	1.1972283	0.04154861	1.1972283	244.36787		8.48056	-0.030527	0.00030281	-0.00014342	NaN	1.4396	168	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14140	+		531	10263	328	333							-0.11771723114054566
AHAACSGC	8	Unmodified						0	0	0			REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	REV__ENST00000490459.5_1_2:32095017-32236086:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.259955	718.252679	1.9827	0.0014261	7.1227	0.005123	9.1054	0.0065491	719.265611064321	26.022	0.096544	26.011	25.938	26.035	-0.011135	705	88	1.1990347	0.052381873	1.1975152	244.73656		10.691742	0.030527	-0.00025239	0.00014342	NaN	1.4396	167	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18398	+		532	10263	328	333							-0.11771723114054566
AHCRSFPS	8	Unmodified	_AHCRSFPS_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8|KCP	REV__nc|ENSG00000135253|Q6ZWJ8|KCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4093968970001	1	904.409397	903.40212	2.1685	0.0019612	-0.29207	-0.00026415	1.8764	0.001697	904.4087421883456	23.345	0.096464	23.345	23.296	23.393	0	411	43	1.3751161	0.025023222	1.3751161	279.59775	0	5.08786						83	5	2	NaN	NaN	NaN	0.83582	1	6137	6137		4.4131	0.44458	1	5541.8	+		533	9608	329	334	401	401					-0.05344454499788753
AHDEPFFYTL	10	Unmodified	_AHDEPFFYTL_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.2876710375501	2	620.287671	1238.56079	0.93743	0.00058148	4.8588	0.0030138	5.7962	0.0035953	620.2929360225278	22.862	0.14463	22.848	22.8	22.945	-0.01354	1167	85	0.91857195	0.05141151	0.9170525	372.01666	0	20.82138						215	7	3	NaN	NaN	NaN	0.53991	1	16752	16752		17.799	7.4388	1	21450	+		534	9947	330	335	402	402					-0.04894882110511389
AHDEPFFYTL	10	Unmodified						0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.287671	1238.56079	1.5689	0.00097317	5.0475	0.0031309	6.6164	0.004104	620.2917137093314	22.838	0.12062	22.838	22.79	22.911	0	1170	52	0.91673553	0.031219184	0.91673553	371.27292		12.643585	-0.0049181	8.7349E-05	-0.00015849	NaN	17.799	148	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17207	+		535	9947	330	335							-0.04894882110511389
AHDEPFFYTL	10	Unmodified						0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.287671	1238.56079	0.93743	0.00058148	4.8588	0.0030138	5.7962	0.0035953	620.2929360225278	22.862	0.14463	22.848	22.8	22.945	-0.01354	1167	85	0.91857195	0.05141151	0.9170525	372.01666		20.82138	0.0049181	-0.00014673	0.00015849	NaN	17.799	215	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21450	+		536	9947	330	335							-0.04894882110511389
AHEAVPGD	8	Unmodified	_AHEAVPGD_					0	0	0			REV__ENSG00000139410|ENST00000403593|SDSL	REV__ENSG00000139410|ENST00000403593|SDSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3631582109001	1	795.363158	794.355882	2.0373	0.0016204	-3.242	-0.0025785	-1.2047	-0.00095818	795.3605779676393	55.028	0.072029	55.028	55.004	55.076	0	393	331	1.3858368	0.19743192	1.3858368	282.3573	0	40.225754						317	4	2	NaN	NaN	NaN	0.83211	1	4674	4674		4.9097	0	1	48284	+		537	9769	331	336	403	403					-0.049521961302275486
AHEAVPGD	8	Unmodified						0	0	0			REV__ENSG00000139410|ENST00000403593|SDSL	REV__ENSG00000139410|ENST00000403593|SDSL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.363158	794.355882	2.0373	0.0016204	-3.242	-0.0025785	-1.2047	-0.00095818	795.3605779676393	55.028	0.072029	55.028	55.004	55.076	0	393	331	1.3858368	0.19743192	1.3858368	282.3573		40.225754	0.0012148	-0.00085776	-0.00013335	NaN	4.9097	317	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48284	+		538	9769	331	336							-0.049521961302275486
AHEAVPGD	8	Unmodified						0	0	0			REV__ENSG00000139410|ENST00000403593|SDSL	REV__ENSG00000139410|ENST00000403593|SDSL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	795.363158	794.355882	-0.1481	-0.0001178	-1.6203	-0.0012887	-1.7684	-0.0014065	795.3618540472745	55.026	0.047993	55.025	55.025	55.073	-0.0006218	390	397	1.3876231	0.23676765	1.3861036	282.72122		48.240204	-0.0012148	0.00043209	0.00013335	NaN	4.9097	407	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55405	+		539	9769	331	336							-0.049521961302275486
AHGAGKGT	8	Unmodified	_AHGAGKGT_					0	0	0		ENSG00000162761|ENST00000342310|LMX1A	ENSG00000162761|ENST00000342310|LMX1A	ENSG00000162761|ENST00000342310|LMX1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3580132535	1	698.358013	697.350737	-0.70666	-0.0004935	-2.3	-0.0016062	-3.0066	-0.0020997	698.3562139022729	47.227	0.23959	47.234	47.138	47.378	0.007412	714	40	1.1936152	0.023486614	1.1920958	243.76709	0	4.7965546						171	11	2	NaN	NaN	NaN	0.84727	1	3110	3110		1.2418	0.31598	1	14541			540	4174	332	337	404	404					-0.010044552022009157
AHGAGTAA	8	Unmodified	_AHGAGTAA_					0	0	0			REV__ENST00000415259.5_2_3:51705480-51705564:+|nuORF	REV__ENST00000415259.5_2_3:51705480-51705564:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3158140877999	1	655.315814	654.308538	0.98144	0.00064315	-7.2148	-0.004728	-6.2334	-0.0040848	655.311120456775	27.759	0.09651	27.75	27.726	27.822	-0.009552	738	73	1.179155	0.04341328	1.1776356	241.11877	0	8.877335						89	5	2	NaN	NaN	NaN	0.84651	1	2076	2076		1.6704	0	1	5963.8	+		541	12089	333	338	405	405					-0.03244430610584459
AHGAVASG	8	Unmodified	_AHGAVASG_					0	0	0			REV__COX11|p.A160Mfs*37|1|0.27|ENSG00000166260|chr17:54964742-54964743|-/TG|frameshift_variant	REV__COX11|p.A160Mfs*37|1|0.27|ENSG00000166260|chr17:54964742-54964743|-/TG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3314641520001	1	669.331464	668.324188	1.8409	0.0012322	-2.5751	-0.0017236	-0.73412	-0.00049137	669.3314220489574	53.314	0.23997	53.314	53.242	53.482	0	633	160	1.2423272	0.095568776	1.2423272	253.92741	0	19.533936						715	11	4	NaN	NaN	NaN	0.84692	1	2553	2553		1.4396	0	1	123290	+		542	8292	334	339	406	406					-0.023241440935180435
AHGGASKG	8	Unmodified	_AHGGASKG_					0	0	0		ENST00000373669.6_1_X:71401532-71406332:+|nuORF	ENST00000373669.6_1_X:71401532-71406332:+|nuORF	ENST00000373669.6_1_X:71401532-71406332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.3423631893002	1	684.342363	683.335087	1.2596	0.00086202	1.8075	0.001237	3.0672	0.002099	684.3438362939146	42.219	0.14397	42.219	42.171	42.315	0	732	43	1.1827712	0.025310874	1.1827712	241.64781	0	5.171173						142	7	2	NaN	NaN	NaN	0.84876	1	2908	2908		0.39566	0.065779	1	15032			543	6681	335	340	407	407					-0.01924741719233225
AHGPVIKLS	9	Unmodified	_AHGPVIKLS_					0	0	0			REV__ENST00000467747.1_1_2:97526365-97527817:-|nuORF	REV__ENST00000467747.1_1_2:97526365-97527817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5516276833001	1	921.551628	920.544351	-0.3394	-0.00031278	1.0782	0.00099363	0.73881	0.00068085	921.5520677255992	51.899	0.095871	51.899	51.803	51.899	-9.9182E-05	345	49	1.4143922	0.028528094	1.4128729	287.50327	0	5.798889						102	5	2	NaN	NaN	NaN	0.61413	1	6301	6301		4.9097	2.1245	1	7046.9	+		544	10523	336	341	408	408					0.08090081514046688
AHGPVIKLS	9	Unmodified						0	0	0			REV__ENST00000467747.1_1_2:97526365-97527817:-|nuORF	REV__ENST00000467747.1_1_2:97526365-97527817:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	921.551628	920.544351	-0.3394	-0.00031278	1.0782	0.00099363	0.73881	0.00068085	921.5520677255992	51.899	0.095871	51.899	51.803	51.899	-9.9182E-05	345	49	1.4143922	0.028528094	1.4128729	287.50327		5.798889	0.035116	0.0016269	0.0010237	NaN	4.9097	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7046.9	+		545	10523	336	341							0.08090081514046688
AHIPDPVG	8	Unmodified	_AHIPDPVG_					0	0	0		RYR3|p.R1711P|1|0.57|ENSG00000198838|chr15:33662662-33662662|G/C|missense_variant	RYR3|p.R1711P|1|0.57|ENSG00000198838|chr15:33662662-33662662|G/C|missense_variant	RYR3|p.R1711P|1|0.57|ENSG00000198838|chr15:33662662-33662662|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4202791593001	1	805.420279	804.413003	-0.12923	-0.00010409	9.3671	0.0075444	9.2379	0.0074404	805.4257729782574	55.026	0.095943	55.025	55.001	55.097	-0.0006218	411	64	1.3751161	0.037528872	1.3735967	280.1134	0	7.644684						127	5	3	NaN	NaN	NaN	0.82797	1	4705	4705		5.4659	1.8926	1	11484			546	13669	337	342	409	409					0.0029727114614388483
AHLEAKELW	9	Unmodified	_AHLEAKELW_					0	0	0		TBX3|p.V105A|1|0.44|ENSG00000135111|chr12:114682887-114682887|A/G|missense_variant	TBX3|p.V105A|1|0.44|ENSG00000135111|chr12:114682887-114682887|A/G|missense_variant	TBX3|p.V105A|1|0.44|ENSG00000135111|chr12:114682887-114682887|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7929235909501	2	548.792924	1095.57129	2.0328	0.0011156	-1.6121	-0.00088472	0.42063	0.00023084	548.7924533600958	23.055	0.16864	23.041	22.993	23.162	-0.013294	1251	82	0.8670771	0.04972291	0.8655577	351.6663	0	20.166443						443	8	4	NaN	NaN	NaN	0.032764	1	12334	12334		55.494	13.709	1	321980			547	13713	338	343	410	410					0.027331453345595946
AHLGSALVL	9	Unmodified	_AHLGSALVL_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.7661775241999	2	440.766178	879.517802	0.76856	0.00033876	-0.6316	-0.00027839	0.13697	6.0371E-05	440.7660064885743	20.694	0.12054	20.68	20.656	20.776	-0.014088	1350	43	0.80618626	0.025878608	0.8046668	327.96606	0	10.5277405						149	6	3	NaN	NaN	NaN	0.049695	1	5676	5676		47.04	5.5801	1	29226			548	438	339	344	411	411					0.07322392622688767
AHSGSSNV	8	Unmodified	_AHSGSSNV_					0	0	0		ENST00000504932.2_1_11:124629306-124634876:+|nuORF;ENST00000532579.1_1_11:124632332-124634876:+|nuORF	ENST00000504932.2_1_11:124629306-124634876:+|nuORF	ENST00000504932.2_1_11:124629306-124634876:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.6750167932	2	379.675017	757.335481	1.7208	0.00065336	2.2643	0.00085969	3.9851	0.001513	379.67572426485583	19.756	0.19225	19.756	19.732	19.924	0	1386	49	0.78399014	0.029607654	0.78399014	319.7257	0	12.074554						159	9	2	NaN	NaN	NaN	0.84692	1	4180	4180		1.4396	0.19772	1	16938			549	7323	340	345	412	412					-0.05289366790043459
AHSGSSNV	8	Unmodified						0	0	0		ENST00000504932.2_1_11:124629306-124634876:+|nuORF;ENST00000532579.1_1_11:124632332-124634876:+|nuORF	ENST00000504932.2_1_11:124629306-124634876:+|nuORF	ENST00000504932.2_1_11:124629306-124634876:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	379.675017	757.335481	1.5647	0.00059408	3.5035	0.0013302	5.0682	0.0019243	379.6764213307837	19.803	0.16843	19.789	19.717	19.885	-0.014141	1383	46	0.7858409	0.027758658	0.7843215	320.4805		11.320496	0.016519	0.00070623	0.00016567	NaN	1.4396	155	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17543			550	7323	340	345							-0.05289366790043459
AHTAAAPV	8	Unmodified	_AHTAAAPV_					0	0	0			REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3940644088	1	737.394064	736.386788	1.1386	0.00083958	1.6983	0.0012523	2.8368	0.0020919	737.3955654143897	24.502	0.12052	24.502	24.454	24.574	0	558	58	1.2873057	0.034147143	1.2873057	262.63257	0	6.966614						146	6	3	NaN	NaN	NaN	0.84692	1	3858	3858		1.4396	1.0439	1	13141	+		551	11607	341	346	413	413					0.008050019746519865
AHTCKQDL	8	Unmodified	_AHTCKQDL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	915.4352772965	1	915.435277	914.428001	1.8024	0.00165	4.5464	0.0041619	6.3488	0.0058119	915.439392096607	27.977	0.12062	27.977	27.929	28.05	0	375	64	1.3965509	0.03748095	1.3965509	283.9046	0	7.6194763						149	6	3	NaN	NaN	NaN	0.72013	1	6308	6308		17.799	4.0619	1	15580			552	1979	342	347	414	414					-0.032636050481755774
AHTCKQDL	8	Unmodified						0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	915.435277	914.428001	1.2505	0.0011447	5.9896	0.0054831	7.2401	0.0066278	915.4407935817688	27.977	0.1448	27.968	27.919	28.064	-0.0089798	372	55	1.3983358	0.032131672	1.3968164	284.26746		6.5320435	-0.0048797	0.00066067	0.00013278	NaN	17.799	134	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16329			553	1979	342	347							-0.032636050481755774
AHVAAAVL	8	Unmodified	_AHVAAAVL_					0	0	0		nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.4460999792999	1	751.4461	750.438824	1.1416	0.00085787	-10.365	-0.0077888	-9.2234	-0.0069309	751.4379691921073	34.033	0.16895	34.032	33.96	34.129	-0.0012474	483	73	1.3321642	0.043025136	1.3306447	271.69153	0	8.774872						214	8	2	NaN	NaN	NaN	0.83849	1	3995	3995		4.0537	0	1	22037			554	7993	343	348	415	415					0.053621653884079024
AHVCGRCCAEF	11	Unmodified	_AHVCGRCCAEF_					0	0	0		ENSG00000103449|ENST00000251020|SALL1	ENSG00000103449|ENST00000251020|SALL1	ENSG00000103449|ENST00000251020|SALL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2439030856	2	598.243903	1194.47325	1.3691	0.00081903	-8.1095	-0.0048515	-6.7404	-0.0040324	598.7398447939931	34.565	0.072369	34.565	34.541	34.614	0	1227	64	0.88180584	0.038627446	0.88180584	357.27188	0	15.650269						128	4	3	NaN	NaN	NaN	0.7072	1	16277	16277		6.9844	0.73415	1	10117			555	1442	344	349	416	416					-0.11620445848961936
AIAAGLIPTF	10	Unmodified	_AIAAGLIPTF_					0	0	0			REV__nc|ENSG00000163406|Q16348-2|SLC15A2	REV__nc|ENSG00000163406|Q16348-2|SLC15A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.28948544499997	2	487.289485	972.564418	1.7719	0.00086342	-1.5739	-0.00076696	0.19796	9.6463E-05	487.2887084767588	23.875	0.21704	23.861	23.765	23.982	-0.013048	1317	67	0.8265074	0.04060483	0.82498795	335.73822	0	16.494232						358	10	4	NaN	NaN	NaN	0.29898	1	7539	7539		27.789	0.74236	1	110720	+		556	10280	345	350	417	417					0.0770383245398989
AIAGVVFK	8	Unmodified	_AIAGVVFK_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4978011988001	1	804.497801	803.490525	-0.07019	-5.6468E-05	-8.5907	-0.0069112	-8.6609	-0.0069677	804.4911411230132	58.29	0.048019	58.29	58.29	58.338	-0.00048065	480	49	1.3339561	0.028668165	1.3324367	271.73438	0	5.8398743						90	3	3	NaN	NaN	NaN	0.84876	1	4699	4699		0.39566	0	1	9178.3	+		557	9559	346	351	418	418					0.0809190908232722
AIATNAMIA	9	Unmodified	_AIATNAMIA_					0	0	0			REV__tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	REV__tr|U7SK63|U7SK63_FUSNUThiazolesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.4655147924	1	875.465515	874.458238	1.6966	0.0014853	1.4961	0.0013097	3.1926	0.002795	875.4630064039287	26.36	0.072399	26.349	26.324	26.397	-0.011135	363	58	1.4036897	0.033911347	1.4021703	285.54922	0	6.8984985						82	4	2	NaN	NaN	NaN	0.39244	1	5599	5599		14.042	1.0388	1	5187.4	+		558	13410	347	352	419	419					0.01598753617008697
AIGGKGGEL	9	Unmodified	_AIGGKGGEL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.4464939098001	1	801.446494	800.439217	1.549	0.0012414	4.7629	0.0038172	6.3119	0.0050586	801.4507207782702	32.345	0.14479	32.345	32.321	32.466	0	456	58	1.348284	0.03401625	1.348284	274.6706	0	6.9297485						141	7	2	NaN	NaN	NaN	0.31737	1	4755	4755		17.799	3.7574	1	14782	+		559	9275	348	353	420	420					0.03101540317618401
AIGGKGGEL	9	Unmodified						0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	801.446494	800.439217	1.549	0.0012414	4.7629	0.0038172	6.3119	0.0050586	801.4507207782702	32.345	0.14479	32.345	32.321	32.466	0	456	58	1.348284	0.03401625	1.348284	274.6706		6.9297485	0.0024397	0.00015032	-0.00013535	NaN	17.799	141	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14782	+		560	9275	348	353							0.03101540317618401
AIGGKGGEL	9	Unmodified						0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	801.446494	800.439217	1.11	0.00088959	4.3556	0.0034907	5.4655	0.0043803	801.4498153385828	32.344	0.096519	32.341	32.316	32.413	-0.0037613	453	52	1.3500742	0.030429125	1.3485547	275.03528		6.1989746	-0.0024397	-0.00017613	0.00013535	NaN	17.799	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13688	+		561	9275	348	353							0.03101540317618401
AIIDVVIL	8	Unmodified	_AIIDVVIL_					0	0	0			REV__OR4A5|p.T132Pfs*3|1|0.4|ENSG00000221840|chr11:54707277-54707277|G/-|frameshift_variant	REV__OR4A5|p.T132Pfs*3|1|0.4|ENSG00000221840|chr11:54707277-54707277|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.5549817267002	1	855.554982	854.547705	1.5373	0.0013152	-1.0581	-0.00090523	0.47922	0.00041	855.5535869414709	36.133	0.12064	36.133	36.085	36.205	0	357	52	1.407258	0.03032887	1.407258	286.3784	0	6.171936						138	6	3	NaN	NaN	NaN	0.27293	1	5464	5464		44.247	5.639	1	14704	+		562	11303	349	354	421	421					0.11461331568057176
AIIDVVIL	8	Unmodified						0	0	0			REV__OR4A5|p.T132Pfs*3|1|0.4|ENSG00000221840|chr11:54707277-54707277|G/-|frameshift_variant	REV__OR4A5|p.T132Pfs*3|1|0.4|ENSG00000221840|chr11:54707277-54707277|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	855.554982	854.547705	1.5373	0.0013152	-1.0581	-0.00090523	0.47922	0.00041	855.5535869414709	36.133	0.12064	36.133	36.085	36.205	0	357	52	1.407258	0.03032887	1.407258	286.3784		6.171936	0.0002668	-9.9402E-05	-0.00013221	NaN	44.247	138	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14704	+		563	11303	349	354							0.11461331568057176
AILGSVTF	8	Unmodified	_AILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4610813415002	1	807.461081	806.453805	1.9559	0.0015793	-1.1751	-0.00094884	0.7808	0.00063046	807.4610867331625	28.532	0.096548	28.532	28.508	28.605	0	435	52	1.360811	0.030412912	1.360811	277.1877	0	6.1948853						86	5	2	NaN	NaN	NaN	0.45125	1	4848	4848		33.698	5.0318	1	8389.3			564	2190	350	355	422	422					0.04283612465769693
AILGSVTF	8	Unmodified	_AILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4610813415002	1	807.461081	806.453805	1.5376	0.0012416	0.83053	0.00067062	2.3682	0.0019122	807.4612467132196	28.532	0.072384	28.523	28.499	28.572	-0.0083485	432	49	1.3625998	0.02862537	1.3610804	277.5521	0	5.83078						75	4	2	NaN	NaN	NaN	0.76633	1	4754	4754		13.737	0	1	7751.2			565	2190	350	355	423	423					0.04283612465769693
AISFAPYLA	9	Unmodified	_AISFAPYLA_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.76056083004994	2	476.760561	951.506569	1.4296	0.00068158	-5.7708	-0.0027513	-4.3412	-0.0020697	476.7582724743116	21.513	0.16869	21.513	21.44	21.609	0	1329	46	0.81912065	0.027707577	0.81912065	332.8403	0	11.258667						160	8	3	NaN	NaN	NaN	0.65818	1	7125	7125		2.7852	0.32367	1	16725			566	3239	351	356	424	424					0.028875705285599906
AIVDVVANR	9	Unmodified	_AIVDVVANR_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.7798162157	2	478.779816	955.545079	1.7814	0.00085291	-2.6517	-0.0012696	-0.87031	-0.00041669	478.77899583397095	18.77	0.12002	18.756	18.708	18.828	-0.014059	1335	43	0.8154261	0.02586186	0.81390667	331.31912	0	10.508026						139	6	3	NaN	NaN	NaN	0.2961	1	7098	7098		19.164	9.4176	1	15868			567	3149	352	357	425	425					0.0655287616308442
AIVKSGGK	8	Unmodified	_AIVKSGGK_					0	0	0		ENSG00000178172|ENST00000325630|SPINK6;chr5:148202893-148203021|283|25.86|0.1|8.0|+|ENST00000621437|SPINK6,SPINK6	ENSG00000178172|ENST00000325630|SPINK6	ENSG00000178172|ENST00000325630|SPINK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4723147298002	1	759.472315	758.465038	1.3762	0.0010452	4.5734	0.0034734	5.9496	0.0045185	759.4751306979077	29.256	0.07238	29.256	29.232	29.305	0	453	55	1.3500742	0.032224298	1.3500742	275.29184	0	6.5707703						89	4	2	NaN	NaN	NaN	0.76406	1	4202	4202		14.042	1.9929	1	10841			568	147	353	358	426	426					0.07614434559911842
AIVLKQYIGR	10	Unmodified	_AIVLKQYIGR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.5765191834667	3	387.576519	1159.70773	0.82724	0.00032062	8.7246	0.0033814	9.5518	0.0037021	387.5798948557898	30.801	0.16888	30.801	30.777	30.946	0	1479	49	0.72651637	0.029717028	0.72651637	441.6789	0	18.066193						151	8	2	NaN	NaN	NaN	0.77435	1	15145	15145		1.8901	0.36453	1	18850	+		569	10114	354	359	427	427					0.13426259565085275
AKAVAALP	8	Unmodified	_AKAVAALP_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	740.4665010703999	1	740.466501	739.459225	1.7581	0.0013018	-1.9015	-0.001408	-0.14333	-0.00010613	740.465565214612	29.232	0.28956	29.232	29.16	29.449	0	612	190	1.2549332	0.11363721	1.2549332	256.0086	0	23.182175						638	13	4	NaN	NaN	NaN	0.84651	1	3902	3902		1.6704	0	1	416960			570	6144	355	360	428	428					0.07907336048208435
AKAVAALP	8	Unmodified						0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	740.466501	739.459225	1.8349	0.0013587	-2.7506	-0.0020367	-0.91574	-0.00067808	740.46463349228	29.231	0.33785	29.224	29.175	29.513	-0.0077209	612	175	1.2549332	0.104590416	1.2534138	256.0086		21.336624	-0.0042402	-0.00031775	-0.00075972	NaN	1.6704	686	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393090			571	6144	355	360							0.07907336048208435
AKEKRYNRNT	10	Unmodified	_AKEKRYNRNT_					0	0	0			REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.34691725095	2	640.346917	1278.67928	2.1648	0.0013862	-1.3072	-0.00083705	0.85758	0.00054915	640.3472141878127	37.504	0.19268	37.506	37.434	37.627	0.0028229	1236	115	0.876284	0.06993121	0.8747646	354.76755	0	28.311981						999	9	7	NaN	NaN	NaN	0.73444	1	17577	17577		5.6942	0	1	446630	+		572	12114	356	361	429	429					0.0510890991783981
AKFGAGAA	8	Unmodified	_AKFGAGAA_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852	1	692.372601	691.365324	0.87827	0.00060809	7.1348	0.0049399	8.0131	0.005548	692.3771962845735	40.464	0.16826	40.464	40.392	40.561	0	717	97	1.1918083	0.057791352	1.1918083	243.43861	0	11.804474						222	8	3	NaN	NaN	NaN	0.84876	1	3059	3059		0.39566	0	1	25908			573	566	357	362	430	430					0.007296169459436896
AKFGAGAA	8	Unmodified	_AKFGAGAA_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	0.96204	0.00066609	5.5099	0.0038149	6.4719	0.004481	692.3767069437514	31.596	0.096563	31.592	31.544	31.64	-0.0044174	732	43	1.1827712	0.025308013	1.1812518	241.59268	0	5.1694336						58	5	2	NaN	NaN	NaN	0.84887	1	2986	2986		0.32989	0.32989	1	4261.7			574	566	357	362	431	431					0.007296169459436896
AKFGAGAA	8	Unmodified						0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.4578	0.0010093	9.1381	0.006327	10.596	0.0073363	692.3792366011988	31.815	0.2655	31.815	31.694	31.959	0	717	163	1.1918083	0.097742796	1.1918083	243.4386		19.964935	0.11136	0.0003813	0.0052783	NaN	0.32989	758	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338650			575	566	357	362							0.007296169459436896
AKFGAGAA	8	Unmodified						0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	692.372601	691.365324	0.85636	0.00059292	5.5599	0.0038495	6.4163	0.0044424	692.3761162131769	40.438	0.14419	40.445	40.373	40.517	0.0067558	714	61	1.1936152	0.036142826	1.1920958	243.80768		7.382538	-0.0096444	-0.00072463	0.00014371	NaN	0.39566	186	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23388			576	566	357	362							0.007296169459436896
AKFQHLSH	8	Unmodified	_AKFQHLSH_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5108255011002	1	967.510826	966.503549	1.0084	0.00097568	5.4745	0.0052967	6.483	0.0062724	967.5162634678071	29.062	0.096523	29.055	29.007	29.103	-0.0077209	336	64	1.419741	0.037433147	1.4182216	288.38818	0	7.6036987						167	5	3	NaN	NaN	NaN	0.84455	1	7376	7376		2.7852	0	1	17739			577	5362	358	363	432	432					0.018957401944248886
AKGGGAGFL	9	Unmodified	_AKGGGAGFL_					0	0	0			REV__ENSG00000101421|ENST00000217402|CHMP4B	REV__ENSG00000101421|ENST00000217402|CHMP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.4253645372002	1	777.425365	776.418088	1.3099	0.0010183	6.0297	0.0046876	7.3395	0.0057059	777.4301171006651	34.01	0.21719	34.01	33.962	34.179	0	492	88	1.3267875	0.052008152	1.3267875	270.43234	0	10.600555						385	10	3	NaN	NaN	NaN	0.27442	1	4448	4448		20.555	5.3801	1	99566	+		578	8853	359	364	433	433					0.020935750087687666
AKGGGAGFL	9	Unmodified						0	0	0			REV__ENSG00000101421|ENST00000217402|CHMP4B	REV__ENSG00000101421|ENST00000217402|CHMP4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	777.425365	776.418088	1.3099	0.0010183	6.0297	0.0046876	7.3395	0.0057059	777.4301171006651	34.01	0.21719	34.01	33.962	34.179	0	492	88	1.3267875	0.052008152	1.3267875	270.43234		10.600555	0.001237	0.00020118	0.00075972	NaN	20.555	385	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99566	+		579	8853	359	364							0.020935750087687666
AKGGGGGS	8	Unmodified	_AKGGGGGS_					0	0	0			REV__ENSG00000112799|ENST00000230568|LY86	REV__ENSG00000112799|ENST00000230568|LY86	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.2892649863	1	590.289265	589.281989	1.5773	0.00093106	3.2946	0.0019447	4.8719	0.0028758	590.2896848029023	35.698	0.024139	35.698	35.698	35.722	0.00053024	1188	37	0.90571284	0.022057295	0.9041934	185.6218	0	4.5205536						37	2	2	NaN	NaN	NaN	0.84756	1	537	537		1.072	0.74213	1	2437.9	+		580	9130	360	365	434	434					-0.029081195018989092
AKGGKGPL	8	Unmodified	_AKGGKGPL_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4460999793001	1	727.4461	726.438824	0.36009	0.00026195	0.070074	5.0975E-05	0.43016	0.00031292	727.4456164297243	45.5	0.14369	45.512	45.464	45.607	0.011345	576	40	1.2765218	0.023371339	1.2750024	260.49765	0	4.7693176						89	7	2	NaN	NaN	NaN	0.84692	1	3635	3635		1.4396	1.0439	1	5548.2	+		581	9516	361	366	435	435					0.06466165388428635
AKGGKGPL	8	Unmodified						0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	727.4461	726.438824	0.36009	0.00026195	0.070074	5.0975E-05	0.43016	0.00031292	727.4456164297243	45.5	0.14369	45.512	45.464	45.607	0.011345	576	40	1.2765218	0.023371339	1.2750024	260.49765		4.7693176	0.064519	9.1998E-05	-0.00075972	NaN	1.4396	89	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5548.2	+		582	9516	361	366							0.06466165388428635
AKGKKAVM	8	Unmodified	_AKGKKAVM_					0	0	0		nc|ENSG00000178965|Q5RHP9-3|ERICH3	nc|ENSG00000178965|Q5RHP9-3|ERICH3	nc|ENSG00000178965|Q5RHP9-3|ERICH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.5073200276001	1	832.50732	831.500044	-0.21226	-0.00017671	-1.4771	-0.0012297	-1.6893	-0.0014064	832.5059511046129	56.035	0.16808	56.034	55.986	56.154	-0.00059128	438	187	1.359022	0.111136794	1.3575026	276.68365	0	22.626373						429	8	5	NaN	NaN	NaN	0.84876	1	5045	5045		0.39566	0	1	185630			583	7991	362	367	436	436					0.07755354096207157
AKGKKAVM	8	Unmodified						0	0	0		nc|ENSG00000178965|Q5RHP9-3|ERICH3	nc|ENSG00000178965|Q5RHP9-3|ERICH3	nc|ENSG00000178965|Q5RHP9-3|ERICH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.50732	831.500044	2.0097	0.0016731	-3.0932	-0.0025751	-1.0836	-0.00090207	832.5042339511663	55.821	0.12008	55.821	55.773	55.893	0	435	103	1.360811	0.060868025	1.360811	277.04788		12.39212	-0.10664	-0.00095055	0.0016542	NaN	0.39566	228	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64971			584	7991	362	367							0.07755354096207157
AKGSGGKG	8	Unmodified	_AKGSGGKG_					0	0	0			REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3627642804001	1	661.362764	660.355488	1.982	0.0013108	7.3716	0.0048753	9.3536	0.0061861	661.3675802354607	26.263	0.193	26.252	26.156	26.349	-0.011137	732	157	1.1827712	0.09406209	1.1812518	241.81282	0	19.230637						195	4	2	NaN	NaN	NaN	0.84887	1	2230	2230		0.32989	0	1	35981	+		585	12110	363	368	437	437					0.011724289405719901
AKGSGGKG	8	Unmodified						0	0	0			REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	661.362764	660.355488	1.5404	0.0010188	10.637	0.007035	12.178	0.0080538	661.3699429430171	26.601	0.024157	26.601	26.577	26.601	0	777	139	1.1556307	0.08319986	1.1556307	236.26404		17.009888	0.17462	0.0010092	-0.012811	NaN	0.32989	129	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11203	+		586	12110	363	368							0.011724289405719901
AKGSGGKG	8	Unmodified						0	0	0			REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	REV__ENST00000421216.1_1_20:2474656-2489480:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	661.362764	660.355488	1.982	0.0013108	7.3716	0.0048753	9.3536	0.0061861	661.3675802354607	26.263	0.193	26.252	26.156	26.349	-0.011137	732	157	1.1827712	0.09406209	1.1812518	241.81282		19.230637	-0.17462	-0.0011505	0.012811	NaN	0.32989	195	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35981	+		587	12110	363	368							0.011724289405719901
AKGVVCGG	8	Unmodified	_AKGVVCGG_					0	0	0			REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394002	1	690.360321	689.353045	0.68456	0.00047259	5.0331	0.0034747	5.7177	0.0039473	690.3637963714981	31.982	0.19304	31.979	31.93	32.123	-0.0037594	696	139	1.2044523	0.08311975	1.2029328	246.0352	0	16.978989						438	9	2	NaN	NaN	NaN	0.84692	1	2948	2948		1.4396	1.0439	1	53639	+		588	11981	364	369	438	438					-0.004057427887346421
AKGVVCGG	8	Unmodified						0	0	0			REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	REV__ENST00000392779.6_1_3:160821289-160823116:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	0.68456	0.00047259	5.0331	0.0034747	5.7177	0.0039473	690.3637963714981	31.982	0.19304	31.979	31.93	32.123	-0.0037594	696	139	1.2044523	0.08311975	1.2029328	246.0352		16.978989	0.13032	0.0003476	0.017316	NaN	1.4396	438	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53639	+		589	11981	364	369							-0.004057427887346421
AKHRLHAVKPM	11	Unmodified	_AKHRLHAVKPM_					0	0	0		RAB11FIP1|p.P1178A|1|0.19|ENSG00000156675|chr8:37870521-37870521|G/C|missense_variant	RAB11FIP1|p.P1178A|1|0.19|ENSG00000156675|chr8:37870521-37870521|G/C|missense_variant	RAB11FIP1|p.P1178A|1|0.19|ENSG00000156675|chr8:37870521-37870521|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1287.7466558715998	1	1287.74666	1286.73938	1.1063	0.0014246	4.0158	0.0051713	5.1221	0.0065959	1287.7518964638425	41.737	0.072254	41.745	41.721	41.793	0.0082588	624	91	1.247731	0.054023266	1.2462115	252.55994	0	10.935135						170	4	2	NaN	NaN	NaN	0.77378	1	17721	17721		1.3312	0.15435	1	11949			590	8109	365	370	439	439					0.10747929047352045
AKHSVSIPW	9	Unmodified	_AKHSVSIPW_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7823589046501	2	512.782359	1023.55016	1.9064	0.00097758	1.648	0.00084506	3.5544	0.0018226	512.7827941633778	19.252	0.12006	19.252	19.204	19.324	0	1278	70	0.85049206	0.042397797	0.85049206	345.2411	0	17.210571						184	6	3	NaN	NaN	NaN	0.51576	1	9520	9520		8.962	0	1	23590			591	5002	366	371	440	440					0.03933180025705951
AKHVEGCSRKS	11	Unmodified	_AKHVEGCSRKS_					0	0	0		tr|U7SSB7|U7SSB7_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01571PE=4SV=1	tr|U7SSB7|U7SSB7_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01571PE=4SV=1	tr|U7SSB7|U7SSB7_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01571PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.2083896111333	3	401.20839	1200.60334	1.773	0.00071133	7.5752	0.0030392	9.3482	0.0037506	401.21175372917975	15.556	0.11985	15.544	15.448	15.568	-0.012201	1404	31	0.77288127	0.018518806	0.7713618	469.67816	0	11.253845						83	6	2	NaN	NaN	NaN	0.62211	1	15852	15852		9.0037	0.7262	1	7032.1			592	13826	367	372	441	441					0.011061897460649561
AKNGTTDEL	9	Unmodified	_AKNGTTDEL_					0	0	0			REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4632661859999	1	948.463266	947.45599	1.4242	0.0013508	5.236	0.0049662	6.6602	0.006317	948.4678648886937	22.645	0.096493	22.631	22.607	22.704	-0.01354	303	64	1.4393384	0.037385464	1.437819	292.45157	0	7.5961304						110	5	2	NaN	NaN	NaN	0.16939	1	6881	6881		27.296	3.4458	1	10887	+		593	11703	368	373	442	442					-0.019840035870970496
AKNGTTDEL	9	Unmodified						0	0	0			REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.463266	947.45599	1.8304	0.001736	6.4304	0.006099	8.2608	0.007835	948.469109870293	22.645	0.072378	22.645	22.621	22.694	0	306	61	1.4375578	0.0356071	1.4375578	292.08975		7.2348022	0.0070743	0.00064511	-0.0001306	NaN	27.296	146	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11977	+		594	11703	368	373							-0.019840035870970496
AKNGTTDEL	9	Unmodified						0	0	0			REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	REV__ENST00000315781.9_2_1:227946746-227946803:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.463266	947.45599	1.4242	0.0013508	5.236	0.0049662	6.6602	0.006317	948.4678648886937	22.645	0.096493	22.631	22.607	22.704	-0.01354	303	64	1.4393384	0.037385464	1.437819	292.45157		7.5961304	-0.0070743	-0.00048769	0.0001306	NaN	27.296	110	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10887	+		595	11703	368	373							-0.019840035870970496
AKPPGGQP	8	Unmodified	_AKPPGGQP_					0	0	0		ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.20849546979997	2	376.208495	750.402438	1.4544	0.00054717	-3.9099	-0.0014709	-2.4555	-0.00092378	376.207313392584	29.474	0.096596	29.474	29.425	29.522	0	1476	28	0.72837335	0.016711295	0.72837335	297.0929	0	6.8163147						47	5	2	NaN	NaN	NaN	0.84692	1	4066	4066		1.4396	0	1	3357.9			596	7374	369	374	443	443					0.017252884917070332
AKPPGGQP	8	Unmodified						0	0	0		ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	376.208495	750.402438	2.2113	0.00083192	-3.0753	-0.0011569	-0.86395	-0.00032502	376.2071936185034	29.521	0.048244	29.514	29.49	29.538	-0.0070648	1473	25	0.7302302	0.014853656	0.7287108	297.85025		6.0585938	0.020218	0.00018958	0.00016869	NaN	1.4396	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2530.5			597	7374	369	374							0.017252884917070332
AKQAKIDFEEQ	11	Unmodified	_AKQAKIDFEEQ_					0	0	0		ENST00000503074.1_1_5:35659153-35697983:+|nuORF;nc|ENSG00000152582|Q9C093-3|SPEF2;NIPBL-SPEF2|1|fusion;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.2261032803	3	436.226103	1305.65648	1.2701	0.00055404	-5.7527	-0.0025095	-4.4826	-0.0019554	436.2240614954925	15.75	0.11996	15.75	15.726	15.846	0	1416	67	0.76547134	0.04077679	0.76547134	464.7504	0	24.757324						182	6	3	NaN	NaN	NaN	0.6875	1	18870	18870		5.9336	1.3903	1	17940			598	3779	370	375	444	444					0.015878460097155767
AKQAKIDFEEQ	11	Unmodified						0	0	0		ENST00000503074.1_1_5:35659153-35697983:+|nuORF;nc|ENSG00000152582|Q9C093-3|SPEF2;NIPBL-SPEF2|1|fusion;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	436.226103	1305.65648	1.7366	0.00075753	-5.9871	-0.0026117	-4.2506	-0.0018542	436.22310846987546	15.844	0.095804	15.831	15.783	15.879	-0.012611	1413	61	0.7673241	0.037069798	0.76580465	465.8753		22.506653	0.040473	-0.00014103	0.00016667	NaN	5.9336	115	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12931			599	3779	370	375							0.015878460097155767
AKRGGGGG	8	Unmodified	_AKRGGGGG_					0	0	0		ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000370598.5_1_6:69345325-69345415:+|nuORF	REV__ENST00000370598.5_1_6:69345325-69345415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	1.4911	0.00098318	-1.3913	-0.00091735	0.099837	6.5828E-05	659.3573953770526	29.498	0.53092	29.498	29.256	29.787	0	792	169	1.1465741	0.10134113	1.1465741	234.427	0	20.720078						1028	23	2	NaN	NaN	NaN	0.84727	1	2255	2255		1.2418	0	1	124030			600	7268	371	376	445	445					0.008229645176697886
AKRGGGGG	8	Unmodified						0	0	0		ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000370598.5_1_6:69345325-69345415:+|nuORF	REV__ENST00000370598.5_1_6:69345325-69345415:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.1282	0.00074391	-1.5984	-0.0010539	-0.47021	-0.00031004	659.3575211936497	29.642	0.14478	29.635	29.61	29.755	-0.0070648	795	145	1.1447623	0.08687317	1.1432428	234.05653		17.761963	0.068426	-0.00011543	-0.0016657	NaN	1.2418	293	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30445			601	7268	371	376							0.008229645176697886
AKRLCAES	8	Unmodified	_AKRLCAES_					0	0	0		ENST00000238156.7_1_12:124421304-124421517:-|nuORF	ENST00000238156.7_1_12:124421304-124421517:-|nuORF	ENST00000238156.7_1_12:124421304-124421517:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.2316446026	2	439.231645	876.448736	0.79799	0.0003505	-3.2155	-0.0014123	-2.4175	-0.0010618	439.23032653079616	35.046	0.14477	35.046	34.998	35.143	-4.5776E-05	1434	82	0.75435036	0.050041497	0.7528309	306.89514	0	20.358582						184	7	2	NaN	NaN	NaN	0.84455	1	5628	5628		2.7852	1.1148	1	16177			602	6256	372	377	446	446					0.005569853314909778
AKRNGGGG	8	Unmodified	_AKRNGGGG_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3798113281002	1	716.379811	715.372535	1.1054	0.00079191	4.3194	0.0030943	5.4248	0.0038862	716.3825371120063	27.783	0.24134	27.774	27.726	27.967	-0.009552	624	109	1.247731	0.06488335	1.2462115	254.69524	0	13.244446						443	11	3	NaN	NaN	NaN	0.84692	1	3448	3448		1.4396	0.36755	1	117700	+		603	10274	373	378	447	447					0.003463495463961408
AKSDVLKFI	9	Unmodified	_AKSDVLKFI_					0	0	0			REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.80804233890007	2	510.808042	1019.60153	0.89891	0.00045917	7.4049	0.0037825	8.3038	0.0042417	510.81142608114715	32.924	0.096504	32.921	32.897	32.993	-0.0024757	1230	46	0.8799654	0.027608931	0.878446	357.22354	0	11.207886						113	5	3	NaN	NaN	NaN	0.63698	1	9176	9176		3.9685	1.1833	1	11708	+		604	8341	374	379	448	448					0.09251503999769284
AKSDVLKFI	9	Unmodified	_AKSDVLKFI_					0	0	0			REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.80804233890007	2	510.808042	1019.60153	0.89601	0.00045769	7.842	0.0040058	8.738	0.0044635	511.3141604998653	32.851	0.096485	32.848	32.776	32.872	-0.0031052	1233	58	0.87812483	0.034971297	0.8766054	356.47635	0	14.196655						136	5	3	NaN	NaN	NaN	0.63698	1	9177	9177		3.9685	1.1833	1	11010	+		605	8341	374	379	449	449					0.09251503999769284
AKSDVLKFI	9	Unmodified						0	0	0			REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.808042	1019.60153	1.3985	0.00071438	6.4049	0.0032717	7.8034	0.0039861	510.81213907184974	33.238	0.04826	33.238	33.238	33.287	0	1236	25	0.876284	0.014725566	0.876284	355.7291		5.9778748	0.19515	-0.00098463	-0.00016068	NaN	3.9685	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2309.7	+		606	8341	374	379							0.09251503999769284
AKSDVLKFI	9	Unmodified						0	0	0			REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	REV__ENST00000404600.2_1_6:1514778-1515111:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.808042	1019.60153	0.89601	0.00045769	7.842	0.0040058	8.738	0.0044635	511.3141604998653	32.851	0.096485	32.848	32.776	32.872	-0.0031052	1233	58	0.87812483	0.034971297	0.8766054	356.47635		14.196655	-0.19515	0.00048354	0.00016068	NaN	3.9685	136	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11010	+		607	8341	374	379							0.09251503999769284
AKSGLWYAWI	10	Unmodified	_AKSGLWYAWI_					0	0	0			REV__ENSG00000128641|ENST00000392318|MYO1B	REV__ENSG00000128641|ENST00000392318|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8189413762001	2	597.818941	1193.62333	1.4357	0.00085827	-0.6165	-0.00036855	0.81917	0.00048972	597.8180976337366	19.54	0.04801	19.54	19.54	19.588	0	1086	34	0.9680805	0.0201419	0.9680805	392.23004	0	8.160767						70	3	3	NaN	NaN	NaN	0.65442	1	16267	16267		11.17	0	1	6671.1	+		608	9452	375	380	450	450					0.03426308748316842
AKSIVDKPFIW	11	Unmodified	_AKSIVDKPFIW_					0	0	0			REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	REV__tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.2518126499666	3	435.251813	1302.73361	2.0836	0.0009069	-10.282	-0.0044752	-8.1983	-0.0035683	435.24824001239733	25.515	0.072395	25.503	25.455	25.528	-0.0116	1386	28	0.78399014	0.016658783	0.7824707	476.00513	0	10.114532						54	4	2	NaN	NaN	NaN	0.76251	1	17996	17996		3.3044	0.043437	1	4165	+		609	13477	376	381	451	451					0.09435109016681054
AKSLACGG	8	Unmodified	_AKSLACGG_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3552360615001	1	706.355236	705.34796	0.43506	0.0003073	4.1303	0.0029174	4.5653	0.0032247	706.3580199600235	33.768	0.19309	33.766	33.694	33.887	-0.0018463	684	94	1.2116731	0.05596447	1.2101537	247.40091	0	11.426895						288	9	2	NaN	NaN	NaN	0.84876	1	3250	3250		0.39566	0	1	41167			610	1636	377	382	452	452					-0.016500466513548417
AKSSGSSS	8	Unmodified	_AKSSGSSS_					0	0	0			REV__ENSG00000155249|ENST00000641172|OR4K1	REV__ENSG00000155249|ENST00000641172|OR4K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3315237315	1	710.331524	709.324247	0.46701	0.00033173	3.6214	0.0025724	4.0884	0.0029041	710.3337123011358	33.431	0.14479	33.431	33.359	33.504	0	660	70	1.2261056	0.041499734	1.2261056	250.32101	0	8.47258						132	7	2	NaN	NaN	NaN	0.84727	1	3409	3409		1.2418	0.84618	1	9900.1	+		611	10107	378	383	453	453					-0.04204188884182258
AKTTSGGL	8	Unmodified	_AKTTSGGL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	734.4042947441002	1	734.404295	733.397018	0.83605	0.000614	5.0199	0.0036866	5.856	0.0043006	734.4076960124677	34.035	0.14482	34.035	34.01	34.155	0	585	88	1.2711272	0.05220294	1.2711272	259.3512	0	10.651077						149	7	2	NaN	NaN	NaN	0.84455	1	3806	3806		2.7852	0	1	11463			612	5930	379	384	454	454					0.019655649092555905
AKTTSGGL	8	Unmodified	_AKTTSGGL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.4042947441002	1	734.404295	733.397018	1.163	0.00085408	7.0781	0.0051982	8.2411	0.0060523	734.4089648450902	34.033	0.14484	34.032	33.984	34.129	-0.0012474	585	58	1.2711272	0.034169078	1.2696078	259.3512	0	6.971588						117	7	2	NaN	NaN	NaN	0.84512	1	3725	3725		2.4615	0	1	9531.2			613	5930	379	384	455	455					0.019655649092555905
AKVLPPLE	8	Unmodified	_AKVLPPLE_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.77092855110004	2	433.770929	865.527304	0.98143	0.00042571	0.40157	0.00017419	1.383	0.00059991	433.7711058277392	14.621	0.16809	14.621	14.573	14.741	0	1548	31	0.6837494	0.01861757	0.6837494	278.22638	0	7.5757446						88	8	2	NaN	NaN	NaN	0.8439	1	5613	5613		3.1533	0	1	7657.7			614	2768	380	385	456	456					0.08916160908233906
AKYGETKA	8	Unmodified	_AKYGETKA_					0	0	0			REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	REV__tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.4570585961	1	867.457059	866.449782	1.0328	0.0008959	-7.5653	-0.0065626	-6.5325	-0.0056667	867.4498813272868	39.789	0.16887	39.794	39.697	39.866	0.0053368	459	52	1.3464937	0.03043878	1.3449743	273.95322	0	6.1929626						147	8	2	NaN	NaN	NaN	0.78967	1	5479	5479		10.605	2.3147	1	14355	+		615	13519	381	386	457	457					0.011215229720392017
AKYIGENLQ	9	Unmodified	_AKYIGENLQ_					0	0	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.27710635125	2	518.277106	1034.53966	1.4543	0.00075371	-1.0916	-0.00056577	0.36262	0.00018794	518.7761910641037	27.133	0.072397	27.133	27.133	27.205	0	1263	52	0.85970795	0.031320512	0.85970795	348.93292	0	12.712189						111	4	3	NaN	NaN	NaN	0.48181	1	9975	9975		10.36	2.0699	1	8108.8			616	2776	382	387	458	458					0.023771525806068894
ALAGGKGK	8	Unmodified	_ALAGGKGK_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.4304499151001	1	701.43045	700.423173	1.2544	0.0008799	-5.0762	-0.0035606	-3.8218	-0.0026807	701.4250741512192	56.373	0.19189	56.373	56.325	56.517	0	507	79	1.3178225	0.04663551	1.3178225	269.1107	0	9.523346						368	9	4	NaN	NaN	NaN	0.84876	1	3230	3230		0.39566	0	1	29139	+		617	9338	383	388	459	459					0.060978788713782706
ALAGGKGK	8	Unmodified						0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	701.43045	700.423173	1.2544	0.0008799	-5.0762	-0.0035606	-3.8218	-0.0026807	701.4250741512192	56.373	0.19189	56.373	56.325	56.517	0	507	79	1.3178225	0.04663551	1.3178225	269.1107		9.523346	0.001275	-0.00048824	-0.00013697	NaN	0.39566	368	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29139	+		618	9338	383	388							0.060978788713782706
ALAGGKGK	8	Unmodified						0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	701.43045	700.423173	-0.80208	-0.0005626	-3.4563	-0.0024243	-4.2584	-0.002987	701.4252053313126	56.371	0.14384	56.37	56.322	56.466	-0.00056458	504	88	1.3196158	0.052013636	1.3180964	269.47693		10.621643	-0.001275	0.00064801	0.00013697	NaN	0.39566	344	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27070	+		619	9338	383	388							0.060978788713782706
ALALCVSY	8	Unmodified	_ALALCVSY_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.22021424904995	2	420.220214	838.425876	1.5371	0.00064592	-10.682	-0.0044889	-9.1453	-0.003843	420.2156732842989	21.488	0.19285	21.488	21.44	21.633	0	1329	91	0.81912065	0.055460215	0.81912065	333.4788	0	22.578888						270	9	3	NaN	NaN	NaN	0.79379	1	5244	5244		10.052	0	1	39000	+		620	10458	384	389	460	460					0.00019966214006217342
ALASLLYV	8	Unmodified	_ALASLLYV_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.5080315341	1	849.508032	848.500755	2.159	0.0018341	-4.8895	-0.0041537	-2.7305	-0.0023196	849.503792063565	29.69	0.024115	29.683	29.683	29.707	-0.0070648	408	43	1.3769034	0.025015235	1.375384	280.23282	0	5.0911865						38	2	2	NaN	NaN	NaN	0.76633	1	5234	5234		13.737	0	1	1922.7	+		621	9283	385	390	461	461					0.07044472016900727
ALCFGVLG	8	Unmodified	_ALCFGVLG_					0	0	0		nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5	nc|ENSG00000017483|Q8WUX1-2|SLC38A5	nc|ENSG00000017483|Q8WUX1-2|SLC38A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	779.4120226589	1	779.412023	778.404746	1.5953	0.0012434	-4.8336	-0.0037674	-3.2383	-0.002524	779.409132740121	29.232	0.07238	29.232	29.232	29.305	0	543	55	1.296287	0.03230679	1.296287	264.2039	0	6.5846252						67	4	2	NaN	NaN	NaN	0.83849	1	4472	4472		4.0537	0	1	4774.2			622	450	386	391	462	462					0.006680009051478919
ALCPGRCK	8	Unmodified	_ALCPGRCK_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.21748298234996	2	424.217483	846.420413	1.5636	0.00066329	2.3534	0.00099836	3.917	0.0016617	424.2186111473403	15.532	0.11986	15.52	15.472	15.592	-0.012202	1461	34	0.7376554	0.020413876	0.73613596	300.26712	0	8.30957						88	6	2	NaN	NaN	NaN	0.84692	1	5206	5206		1.4396	0	1	7584.3			623	5930	387	392	463	463					-0.008940358494555767
ALDLAREFL	9	Unmodified	_ALDLAREFL_					0	0	0		nc|ENSG00000148090|Q13825-2|AUH;ENSG00000148090|ENST00000375731|AUH	nc|ENSG00000148090|Q13825-2|AUH	nc|ENSG00000148090|Q13825-2|AUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2952991044001	2	524.295299	1046.57605	1.6714	0.00087629	0.14583	7.6461E-05	1.8172	0.00095275	524.2958870382903	48.426	0.071842	48.426	48.355	48.426	0	1305	28	0.83389086	0.016608357	0.83389086	338.40332	0	6.7398987						44	4	2	NaN	NaN	NaN	0.68136	1	10499	10499		0.79988	0	1	2790.5			624	3614	388	393	464	464					0.05462029477325814
ALDPSLVPT	9	Unmodified	_ALDPSLVPT_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5036744377002	1	912.503674	911.496398	1.5934	0.001454	-1.9766	-0.0018036	-0.38322	-0.00034969	912.5015448746242	27.133	0.072374	27.133	27.109	27.181	0	360	46	1.405474	0.026757836	1.405474	285.73224	0	5.43985						55	4	2	NaN	NaN	NaN	0.20577	1	6251	6251		24.961	1.6266	1	5243.1			625	4601	389	394	465	465					0.03710962803347684
ALDTYLSYI	9	Unmodified	_ALDTYLSYI_					0	0	0		tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	tr|U7SKA6|U7SKA6_FUSNUTetratricopeptiderepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02161PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5404538745	1	1058.54045	1057.53318	2.3098	0.0024451	-1.5967	-0.0016902	0.71312	0.00075487	1058.5386802289818	26.336	0.096533	26.336	26.312	26.408	0	111	91	1.5529068	0.053088427	1.5529068	315.05594	0	10.77066						134	5	2	NaN	NaN	NaN	0.043119	1	10988	10988		49.833	5.5305	1	15591			626	13754	390	395	466	466					0.006712146292329635
ALEASSPLL	9	Unmodified	_ALEASSPLL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230778340-230804693:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5036744377002	1	900.503674	899.496398	1.8549	0.0016703	1.9265	0.0017348	3.7813	0.0034051	900.5059995850585	28.315	0.072369	28.315	28.291	28.363	0	363	64	1.4036897	0.03745711	1.4036897	285.4261	0	7.616516						100	4	2	NaN	NaN	NaN	0.14301	1	6060	6060		29.598	9.0429	1	8637.1			627	2962	391	396	467	467					0.04262962803340997
ALGAAVML	8	Unmodified	_ALGAAVML_					0	0	0		ENST00000380773.8_2_6:2785591-2785759:+|nuORF	ENST00000380773.8_2_6:2785591-2785759:+|nuORF	ENST00000380773.8_2_6:2785591-2785759:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.4276727231	1	745.427673	744.420396	1.2068	0.00089955	-5.4698	-0.0040774	-4.2631	-0.0031778	745.4238285735197	30.462	0.12065	30.456	30.432	30.553	-0.0057545	555	67	1.2891023	0.03952825	1.2875829	262.94727	0	8.062866						137	6	2	NaN	NaN	NaN	0.30174	1	3898	3898		41.978	0	1	16659			628	6736	392	397	468	468					0.037962874221989296
ALGKTKAA	8	Unmodified	_ALGKTKAA_					0	0	0			REV__nc|ENSG00000130479|Q66K74-2|MAP1S	REV__nc|ENSG00000130479|Q66K74-2|MAP1S	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4723147297999	1	759.472315	758.465038	1.7099	0.0012986	-4.6351	-0.0035203	-2.9253	-0.0022216	759.4692399559348	54.188	0.071918	54.188	54.164	54.236	0	438	43	1.359022	0.025049925	1.359022	277.11642	0	5.10791						72	4	2	NaN	NaN	NaN	0.84897	1	4201	4201		0.27539	0	1	6821.2	+		629	9486	393	398	469	469					0.07614434559877736
ALHLTAELI	9	Unmodified	_ALHLTAELI_					0	0	0			REV__nc|ENSG00000112655|Q13308-5|PTK7	REV__nc|ENSG00000112655|Q13308-5|PTK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.79239227470003	2	490.792392	979.570232	1.532	0.00075187	-3.0861	-0.0015147	-1.5542	-0.00076278	490.7908167271111	24.719	0.14478	24.719	24.671	24.816	0	1305	52	0.83389086	0.03137821	0.83389086	338.70374	0	12.744965						159	7	3	NaN	NaN	NaN	0.17818	1	7878	7878		26.732	1.7706	1	23896	+		630	9126	394	399	470	470					0.07962930965663872
ALHLTAELI	9	Unmodified						0	0	0			REV__nc|ENSG00000112655|Q13308-5|PTK7	REV__nc|ENSG00000112655|Q13308-5|PTK7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	490.792392	979.570232	1.532	0.00075187	-3.0861	-0.0015147	-1.5542	-0.00076278	490.7908167271111	24.719	0.14478	24.719	24.671	24.816	0	1305	52	0.83389086	0.03137821	0.83389086	338.70374		12.744965	0.0062687	-8.1804E-06	0.0016825	NaN	26.732	159	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23896	+		631	9126	394	399							0.07962930965663872
ALKKSMFA	8	Unmodified	_ALKKSMFA_					0	0	0		tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	tr|U7SWG5|U7SWG5_FUSNUCobalt-precorrin-5BC(1)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiDPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.5069856766002	1	895.506986	894.499709	1.0894	0.00097559	7.3648	0.0065952	8.4542	0.0075708	895.513980765538	35.167	0.1207	35.167	35.119	35.239	-4.5776E-05	447	43	1.3536539	0.02505529	1.3521345	275.27496	0	5.095154						125	6	3	NaN	NaN	NaN	0.8439	1	5876	5876		3.1533	0.36816	1	9191.8			632	13900	395	400	471	471					0.048239343763498255
ALLGGARG	8	Unmodified	_ALLGGARG_					0	0	0			REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.4256988882001	1	714.425699	713.418422	0.41709	0.00029798	1.087	0.00077657	1.5041	0.0010746	714.4264172392932	52.066	0.04792	52.066	52.042	52.09	-9.9182E-05	651	34	1.2315145	0.01983285	1.229995	251.39798	0	4.0486298						35	3	2	NaN	NaN	NaN	0.84727	1	3419	3419		1.2418	0	1	2434.5	+		633	11506	396	401	472	472					0.05024994728614729
ALLKVLCI	8	Unmodified	_ALLKVLCI_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5637722739999	1	872.563772	871.556496	0.85066	0.00074225	-2.1531	-0.0018787	-1.3024	-0.0011364	872.5615894788568	29.304	0.12063	29.296	29.248	29.368	-0.0077229	1212	46	0.8910048	0.02758801	0.88948536	181.26431	0	5.612442						148	6	3	NaN	NaN	NaN	0.84887	1	5555	5555		0.32989	0	1	15676			634	3089	397	402	473	473					0.11557981932844541
ALLQWPAR	8	Unmodified	_ALLQWPAR_					0	0	0			REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.77961925044997	2	477.779619	953.544686	1.1477	0.00054834	-5.9039	-0.0028207	-4.7562	-0.0022724	477.77671074134156	12.412	0.19186	12.412	12.34	12.532	0	1317	70	0.8265074	0.042485	0.8265074	335.8316	0	17.262787						199	9	2	NaN	NaN	NaN	0.74229	1	7174	7174		16.417	2.9536	1	18157	+		635	11986	398	403	474	474					0.066055012338893
ALLQWPAR	8	Unmodified						0	0	0			REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.779619	953.544686	1.1477	0.00054834	-5.9039	-0.0028207	-4.7562	-0.0022724	477.77671074134156	12.412	0.19186	12.412	12.34	12.532	0	1317	70	0.8265074	0.042485	0.8265074	335.8316		17.262787	-0.032496	8.4457E-05	-0.00016337	NaN	16.417	199	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18157	+		636	11986	398	403							0.066055012338893
ALLQWPAR	8	Unmodified						0	0	0			REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	REV__ENST00000479352.5_1_3:124837626-124844743:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	477.779619	953.544686	1.0032	0.00047931	-6.0583	-0.0028945	-5.0551	-0.0024152	477.7771343367745	12.486	0.12014	12.477	12.429	12.549	-0.0088415	1314	67	0.8283535	0.040639997	0.8268341	336.58176		16.513123	0.032496	-6.3107E-05	0.00016337	NaN	16.417	184	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18543	+		637	11986	398	403							0.066055012338893
ALMAAKAN	8	Unmodified	_ALMAAKAN_					0	0	0			REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4287353556	1	789.428735	788.421459	1.4458	0.0011414	-4.7738	-0.0037686	-3.328	-0.0026272	789.4250411881756	20.863	0.16856	20.849	20.728	20.897	-0.014088	519	37	1.310647	0.021530986	1.3091276	267.0719	0	4.38739						97	8	2	NaN	NaN	NaN	0.82332	1	4518	4518		6.0903	0	1	6241.5	+		638	13323	399	404	475	475					0.018785017911000068
ALMAAKAN	8	Unmodified						0	0	0			REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.428735	788.421459	1.5742	0.0012427	-4.5212	-0.0035692	-2.9471	-0.0023265	789.4250064540563	20.814	0.12048	20.814	20.742	20.862	0	522	37	1.3088527	0.02153325	1.3088527	266.70627		4.387848	-0.017144	6.876E-05	-0.00013745	NaN	6.0903	99	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7137.5	+		639	13323	399	404							0.018785017911000068
ALMAAKAN	8	Unmodified						0	0	0			REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	REV__sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.428735	788.421459	1.4458	0.0011414	-4.7738	-0.0037686	-3.328	-0.0026272	789.4250411881756	20.863	0.16856	20.849	20.728	20.897	-0.014088	519	37	1.310647	0.021530986	1.3091276	267.0719		4.38739	0.017144	-0.0001306	0.00013745	NaN	6.0903	97	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6241.5	+		640	13323	399	404							0.018785017911000068
ALMPGGHCPL	10	Unmodified	_ALMPGGHCPL_					0	0	0		nc|ENSG00000179082|Q8NAJ2|LINC02913	nc|ENSG00000179082|Q8NAJ2|LINC02913	nc|ENSG00000179082|Q8NAJ2|LINC02913	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.24369773284997	2	498.243698	994.472843	0.90944	0.00045312	5.2325	0.0026071	6.1419	0.0030602	498.24631202408784	14.956	0.19231	14.944	14.872	15.064	-0.011738	1353	40	0.8043377	0.02403146	0.80281824	326.6322	0	9.758881						125	9	2	NaN	NaN	NaN	0.6965	1	8203	8203		8.2903	1.4271	1	10648			641	7992	400	405	476	476					-0.024614975064991995
ALNLYTDII	9	Unmodified	_ALNLYTDII_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5720883539	1	1035.57209	1034.56481	1.2764	0.0013218	-0.28859	-0.00029885	0.98777	0.0010229	1035.5716934139846	29.328	0.12064	29.32	29.296	29.417	-0.0077209	171	112	1.5174994	0.065597415	1.51598	307.96045	0	13.312286						332	6	3	NaN	NaN	NaN	0.042816	1	9777	9777		49.961	7.6437	1	122510			642	5122	401	406	477	477					0.04891207383184337
ALPEFTSIF	9	Unmodified	_ALPEFTSIF_					0	0	0		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5349745661001	1	1024.53497	1023.5277	1.4092	0.0014437	-0.89798	-0.00092001	0.51117	0.00052371	1024.5333613645685	33.864	0.07235	33.863	33.839	33.911	-0.0018463	192	43	1.5050892	0.024829865	1.5035697	305.48526	0	5.039673						69	4	2	NaN	NaN	NaN	0.27442	1	9319	9319		20.555	4.1388	1	4947.5			643	1384	402	407	478	478					0.016875358374363714
ALPGSPAN	8	Unmodified	_ALPGSPAN_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3780799936	1	726.37808	725.370804	0.44287	0.00032169	-1.7609	-0.0012791	-1.318	-0.00095737	726.3775580492836	38.732	0.14417	38.732	38.66	38.804	0	615	79	1.2531329	0.04684007	1.2531329	255.7317	0	9.558853						124	7	2	NaN	NaN	NaN	0.84756	1	3692	3692		1.072	0	1	7901.1			644	5825	403	408	479	479					-0.0028670426224834955
ALPLVAMAA	9	Unmodified	_ALPLVAMAA_					0	0	0		nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4960866393	1	856.496087	855.48881	1.3995	0.0011987	-5.8634	-0.005022	-4.4639	-0.0038233	856.4913956077935	34.853	0.096432	34.853	34.804	34.901	-0.0006485	393	55	1.3858368	0.032148838	1.3843174	282.01428	0	6.5421753						95	5	2	NaN	NaN	NaN	0.16059	1	5336	5336		27.861	2.9595	1	6300.2			645	3701	404	409	480	480					0.05528532002051634
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.28948544499997	2	487.289485	972.564418	1.984	0.00096678	-2.1323	-0.001039	-0.14829	-7.226E-05	487.28838642800093	23.851	0.19275	23.851	23.778	23.971	0	1317	61	0.8265074	0.036913514	0.8265074	335.73822	0	14.9947815						368	9	4	NaN	NaN	NaN	0.13999	1	7690	7690		30.035	9.5867	1	106830			646	2286	405	410	481	481					0.0770383245398989
ALPSKLPTF	9	Unmodified						0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	487.289485	972.564418	1.7719	0.00086342	-1.5739	-0.00076696	0.19796	9.6463E-05	487.2887084767588	23.875	0.21704	23.861	23.765	23.982	-0.013048	1317	67	0.8265074	0.04060483	0.82498795	335.73822		16.494232	0.0054284	0.00030802	-0.00075972	NaN	30.035	358	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110720			647	2286	405	410							0.0770383245398989
ALPWVPPHL	9	Unmodified	_ALPWVPPHL_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2976448281	2	515.297645	1028.58074	2.2674	0.0011684	-5.8065	-0.0029921	-3.5391	-0.0018237	515.2945534512132	17.765	0.095879	17.765	17.717	17.813	0	1257	64	0.86339295	0.03867334	0.86339295	350.45523	0	15.697693						131	5	2	NaN	NaN	NaN	0.6762	1	9727	9727		1.2418	0	1	14016			648	1356	406	411	482	482					0.06758958410750893
ALPYFWEHF	9	Unmodified	_ALPYFWEHF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.2900167612501	2	605.290017	1208.56548	1.7058	0.0010325	-1.1721	-0.00070947	0.53365	0.00032301	605.2887242885121	30.246	0.31372	30.246	30.101	30.415	0	1131	112	0.94059354	0.06793296	0.94059354	381.03952	0	27.52005						935	14	4	NaN	NaN	NaN	0.056143	1	16689	16689		44.302	33.697	1	186900			649	6120	407	412	483	483					-0.03045953177092997
ALPYFWEHF	9	Unmodified	_ALPYFWEHF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2900167612501	2	605.290017	1208.56548	0.90203	0.00054599	-0.76287	-0.00046176	0.13916	8.423E-05	605.2893137019529	30.269	0.26543	30.263	30.166	30.431	-0.0064106	1131	109	0.94059354	0.066093385	0.93907416	381.03952	0	26.77481						925	12	4	NaN	NaN	NaN	0.078597	1	16017	16017		38.918	24.876	1	181470			650	6120	407	412	484	484					-0.03045953177092997
ALQGPWNPEL	10	Unmodified	_ALQGPWNPEL_					0	0	0		ENST00000591030.5_1_19:6477238-6481723:-|nuORF	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.790380902	2	562.790381	1123.56621	1.8843	0.0010604	-11.477	-0.006459	-9.5924	-0.0053985	563.284061140986	22.019	0.024086	22.019	21.994	22.019	0	1248	103	0.8689189	0.0625633	0.8689189	352.30423	0	25.366364						92	2	2	NaN	NaN	NaN	0.76548	1	13823	13823		3.5698	0.35817	1	10780			651	7728	408	413	485	485					0.009368414719347129
ALQHLPRC	8	Unmodified	_ALQHLPRC_					0	0	0			REV__ENSG00000130726|ENST00000253024|TRIM28	REV__ENSG00000130726|ENST00000253024|TRIM28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.25545404990004	2	469.255454	936.496355	0.90007	0.00042236	-0.1947	-9.1363E-05	0.70537	0.000331	469.25639216261004	26.456	0.072378	26.445	26.445	26.517	-0.011137	1338	31	0.81357855	0.018476725	0.8120591	330.66376	0	7.5095215						57	4	2	NaN	NaN	NaN	0.84727	1	6614	6614		1.2418	0	1	4047.1	+		652	9493	409	414	486	486					0.025566843223487012
ALQTHIKL	8	Unmodified	_ALQTHIKL_					0	0	0			REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475	1	923.567278	922.560001	1.8364	0.0016961	-1.9955	-0.001843	-0.1591	-0.00014694	923.5648344306635	55.052	0.048008	55.052	55.028	55.076	0	279	82	1.4535767	0.048061848	1.4535767	295.45877	0	9.769226						121	3	3	NaN	NaN	NaN	0.8439	1	6457	6457		3.1533	0	1	10720	+		653	10297	410	415	487	487					0.09562368031083679
ALQTHIKL	8	Unmodified						0	0	0			REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.567278	922.560001	1.8364	0.0016961	-1.9955	-0.001843	-0.1591	-0.00014694	923.5648344306635	55.052	0.048008	55.052	55.028	55.076	0	279	82	1.4535767	0.048061848	1.4535767	295.45877		9.769226	0.0011924	-0.00080977	-0.00012975	NaN	3.1533	121	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10720	+		654	10297	410	415							0.09562368031083679
ALQTHIKL	8	Unmodified						0	0	0			REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-3|MTHFD2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	923.567278	922.560001	-0.62021	-0.0005728	-0.38177	-0.00035259	-1.002	-0.00092539	923.5673653088179	55.05	0.047993	55.049	55.025	55.073	-0.0006218	276	85	1.4553556	0.04983926	1.4538362	295.82034		10.130493	-0.0011924	0.00068066	0.00012975	NaN	3.1533	126	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11770	+		655	10297	410	415							0.09562368031083679
ALREAEQEPEL	11	Unmodified	_ALREAEQEPEL_					0	0	0		ENST00000565298.5_1_16:1576517-1634259:-|nuORF;ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.8251489661001	2	642.825149	1283.63574	1.7927	0.0011524	7.041	0.0045261	8.8337	0.0056785	642.8306029101113	28.725	0.1448	28.725	28.677	28.822	0	1164	109	0.9204082	0.066043496	0.9204082	372.616	0	26.736908						257	7	2	NaN	NaN	NaN	0.61966	1	18494	18494		21.85	9.2807	1	29147			656	5508	411	416	488	488					0.0052725563004969445
ALREAEQEPEL	11	Unmodified						0	0	0		ENST00000565298.5_1_16:1576517-1634259:-|nuORF;ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	642.825149	1283.63574	1.7218	0.0011068	6.5975	0.004241	8.3193	0.0053479	642.8298310519816	28.749	0.19303	28.74	28.596	28.789	-0.0083504	1167	124	0.91857195	0.075179756	0.9170525	371.87262		30.435608	0.0075204	-0.00025839	-0.0016778	NaN	21.85	286	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22695			657	5508	411	416							0.0052725563004969445
ALSIEDLLF	9	Unmodified	_ALSIEDLLF_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5611893166001	1	1020.56119	1019.55391	1.3354	0.0013629	3.4762	0.0035477	4.8116	0.0049105	1020.5635704490742	33.213	0.096535	33.21	33.138	33.235	-0.0024757	147	79	1.5316714	0.046058893	1.530152	310.8967	0	9.348938						124	5	2	NaN	NaN	NaN	0.56671	1	9167	9167		6.8632	1.1691	1	8966.6	+		658	9113	412	417	489	489					0.044918050089108874
ALSPPLSLSL	10	Unmodified	_ALSPPLSLSL_					0	0	0		ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5928237960003	1	997.592824	996.585547	0.072053	7.1879E-05	9.6826	0.0096593	9.7547	0.0097312	997.6047259678973	53.753	0.02412	53.753	53.753	53.777	-0.00059128	258	49	1.4660252	0.028440237	1.4645058	297.6634	0	5.774536						78	2	3	NaN	NaN	NaN	0.76548	1	8286	8286		3.5698	1.1083	1	6347.6			659	7107	413	418	490	490					0.0871179776287363
ALSPPLSLSL	10	Unmodified						0	0	0		ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	997.592824	996.585547	1.9708	0.0019661	8.3332	0.0083132	10.304	0.010279	997.6011554732607	53.755	0.048252	53.755	53.731	53.779	0	264	52	1.4624695	0.030222535	1.4624695	296.94144		6.136444	0.0011889	-0.00045967	-0.0010182	NaN	3.5698	104	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10313			660	7107	413	418							0.0871179776287363
ALTGDALAVL	10	Unmodified	_ALTGDALAVL_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.276575035	2	472.276575	942.538597	0.92441	0.00043658	-4.4373	-0.0020956	-3.5129	-0.0016591	472.274856521778	17.426	0.095993	17.412	17.364	17.46	-0.013567	1341	40	0.8117308	0.024023652	0.81021136	329.8822	0	9.763062						94	5	3	NaN	NaN	NaN	0.47601	1	6754	6754		20.449	3.8645	1	6966	+		661	8386	414	419	491	491					0.06502938211713172
ALTGELERL	9	Unmodified	_ALTGELERL_					0	0	0		ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5625863001002	1	1001.56259	1000.55531	1.086	0.0010877	4.0349	0.0040412	5.1208	0.0051288	1001.5673213968483	33.359	0.14482	33.359	33.335	33.48	0	201	85	1.4997677	0.049696565	1.4997677	304.49802	0	10.089905						214	7	3	NaN	NaN	NaN	0.12328	1	8625	8625		32.453	2.8544	1	21120			662	4936	415	420	492	492					0.05505439097669296
ALTIVPED	8	Unmodified	_ALTIVPED_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.461475272	1	857.461475	856.454199	1.2346	0.0010586	-6.0005	-0.0051452	-4.766	-0.0040866	857.456833895987	34.106	0.12072	34.105	34.08	34.201	-0.0012474	513	55	1.3142352	0.032279134	1.3127158	267.43875	0	6.5686035						80	6	2	NaN	NaN	NaN	0.80071	1	5350	5350		9.1232	3.0329	1	5534.5	+		663	10687	416	421	493	493					0.02022987394957454
ALTIVPED	8	Unmodified						0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.461475	856.454199	1.2346	0.0010586	-6.0005	-0.0051452	-4.766	-0.0040866	857.456833895987	34.106	0.12072	34.105	34.08	34.201	-0.0012474	513	55	1.3142352	0.032279134	1.3127158	267.43875		6.5686035	-0.001237	0.00038472	-0.00075972	NaN	9.1232	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5534.5	+		664	10687	416	421							0.02022987394957454
ALVKGKRFLAK	11	Unmodified	_ALVKGKRFLAK_					0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1230.8044883265	1	1230.80449	1229.79721	3.5703	0.0043944	-1.6967	-0.0020883	1.8737	0.0023061	1230.799930838977	39.235	0.67399	39.24	39.023	39.697	0.0046806	66	718	1.579413	0.4267223	1.5778936	319.85492	0	86.417694						12968	29	5	NaN	NaN	NaN	0.77278	1	16547	16547		1.5054	0.43338	1	36259000	+		665	8970	417	422	494	494					0.19150514244438455
ALVKGKRFLAK	11	Unmodified						0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1230.80449	1229.79721	3.1712	0.0039031	-1.5627	-0.0019234	1.6085	0.0019797	1230.800759483609	39.237	0.7946	39.237	39.044	39.839	0	66	790	1.579413	0.4701774	1.579413	319.85492		95.218	-0.0013109	8.082E-05	0.00075972	NaN	1.5054	13108	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56286000	+		666	8970	417	422							0.19150514244438455
ALVKGKRFLAK	11	Unmodified						0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1230.80449	1229.79721	3.5703	0.0043944	-1.6967	-0.0020883	1.8737	0.0023061	1230.799930838977	39.235	0.67399	39.24	39.023	39.697	0.0046806	66	718	1.579413	0.4267223	1.5778936	319.85492		86.417694	0.0013109	-8.4054E-05	-0.00075972	NaN	1.5054	12968	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36259000	+		667	8970	417	422							0.19150514244438455
ALVSVSALAI	10	Unmodified	_ALVSVSALAI_					0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.29476778814995	2	472.294768	942.574983	1.4156	0.0006686	-1.8588	-0.00087791	-0.44319	-0.00020932	472.29378512116455	22.139	0.096531	22.139	22.115	22.212	0	1329	40	0.81912065	0.024010658	0.81912065	332.8852	0	9.757782						125	5	3	NaN	NaN	NaN	0.12649	1	6891	6891		42.318	0.47907	1	19927	+		668	11228	418	423	495	495					0.10139815108414041
ALVSVSALAI	10	Unmodified	_ALVSVSALAI_					0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.29476778814995	2	472.294768	942.574983	0.11623	5.4894E-05	-1.0142	-0.00047901	-0.89799	-0.00042411	472.29417200995414	22.163	0.096457	22.149	22.101	22.197	-0.013731	1326	37	0.8209676	0.022162437	0.81944823	333.6358	0	9.006683						106	5	3	NaN	NaN	NaN	0.070973	1	6758	6758		49.961	3.3736	1	19935	+		669	11228	418	423	496	496					0.10139815108414041
ALVSVSALAI	10	Unmodified						0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	472.294768	942.574983	1.4156	0.0006686	-1.8588	-0.00087791	-0.44319	-0.00020932	472.29378512116455	22.139	0.096531	22.139	22.115	22.212	0	1329	40	0.81912065	0.024010658	0.81912065	332.8852		9.757782	-0.0049822	-0.00051977	-0.00016377	NaN	49.961	125	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19927	+		670	11228	418	423							0.10139815108414041
ALVSVSALAI	10	Unmodified						0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	472.294768	942.574983	0.11623	5.4894E-05	-1.0142	-0.00047901	-0.89799	-0.00042411	472.29417200995414	22.163	0.096457	22.149	22.101	22.197	-0.013731	1326	37	0.8209676	0.022162437	0.81944823	333.6358		9.006683	0.0049822	0.00027804	0.00016377	NaN	49.961	106	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19935	+		671	11228	418	423							0.10139815108414041
ALWLADHYYW	10	Unmodified	_ALWLADHYYW_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3193055169501	2	669.319306	1336.62406	1.6721	0.0011192	-10.934	-0.0073181	-9.2615	-0.0061989	669.3118813952505	23.151	0.12066	23.138	23.114	23.234	-0.013294	1113	52	0.9515937	0.03115189	0.95007426	385.0785	0	12.60614						141	6	3	NaN	NaN	NaN	0.66268	1	18488	18488		10.605	0.99332	1	17194			672	4023	419	424	497	497					-0.03078896602619352
ALWQPACRY	9	Unmodified	_ALWQPACRY_					0	0	0			REV__ENST00000561246.1_1_15:34519911-34521752:+|nuORF	REV__ENST00000561246.1_1_15:34519911-34521752:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2738437683	2	554.273844	1106.53313	1.8796	0.0010418	4.9207	0.0027274	6.8002	0.0037692	554.2771146978772	13.757	0.048056	13.757	13.733	13.781	0	1257	49	0.86339295	0.029479682	0.86339295	350.12897	0	11.954834						91	3	3	NaN	NaN	NaN	0.67989	1	13129	13129		0.92586	0	1	7678.6	+		673	12788	420	425	498	498					-0.01587063851752646
ALWQPACRY	9	Unmodified						0	0	0			REV__ENST00000561246.1_1_15:34519911-34521752:+|nuORF	REV__ENST00000561246.1_1_15:34519911-34521752:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.273844	1106.53313	1.8796	0.0010418	4.9207	0.0027274	6.8002	0.0037692	554.2771146978772	13.757	0.048056	13.757	13.733	13.781	0	1257	49	0.86339295	0.029479682	0.86339295	350.12897		11.954834	-0.006808	8.5579E-05	-0.00016137	NaN	0.92586	91	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7678.6	+		674	12788	420	425							-0.01587063851752646
ALYAAYVLGA	10	Unmodified	_ALYAAYVLGA_					0	0	0			REV__TF|p.D88A|1|0.05|ENSG00000091513|chr3:133753641-133753641|A/C|missense_variant	REV__TF|p.D88A|1|0.05|ENSG00000091513|chr3:133753641-133753641|A/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5509589812999	1	1011.55096	1010.54368	0.91568	0.00092626	2.898	0.0029315	3.8137	0.0038578	1011.5537224565805	31.572	0.14484	31.568	31.495	31.64	-0.0044155	129	88	1.5422925	0.051316142	1.540773	313.08978	0	10.417328						241	7	3	NaN	NaN	NaN	0.6965	1	8829	8829		8.2903	0.045466	1	21126	+		675	13370	421	426	499	499					0.038832420743119656
ALYARRRSY	9	Unmodified	_ALYARRRSY_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.88423473763334	3	385.884235	1154.63087	1.8542	0.00071551	-1.4181	-0.0005472	0.43616	0.00016831	385.88357075671865	11.596	0.14401	11.596	11.548	11.692	0	1521	31	0.70049703	0.018597364	0.70049703	425.8827	0	11.306671						87	7	2	NaN	NaN	NaN	0.48464	1	14982	14982		10.244	3.6263	1	6164.5			676	3230	422	427	500	500					0.05974461068603887
ALYRAVCV	8	Unmodified	_ALYRAVCV_					0	0	0			REV__ENST00000310942.8_1_17:77760985-77761486:+|nuORF	REV__ENST00000310942.8_1_17:77760985-77761486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4865845855	1	894.486585	893.479308	1.4532	0.0012999	8.2474	0.0073772	9.7006	0.0086771	894.4921273575658	26.673	0.048254	26.663	26.639	26.687	-0.010643	327	46	1.425088	0.026732326	1.4235686	289.8066	0	5.4362793						72	3	2	NaN	NaN	NaN	0.83849	1	5865	5865		4.0537	0.48046	1	5833.6	+		677	11687	423	428	501	501					0.02830763716531237
ALYVFTIA	8	Unmodified	_ALYVFTIA_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.25765400035004	2	449.257654	896.500755	2.3767	0.0010678	-0.77044	-0.00034613	1.6063	0.00072164	449.25662800442615	14.668	0.023946	14.656	14.656	14.68	-0.011738	1368	22	0.7950918	0.012949824	0.79357237	323.35855	0	5.2666016						30	2	2	NaN	NaN	NaN	0.84692	1	5898	5898		1.4396	0	1	1711.2			678	3166	424	429	502	502					0.04836472016904736
AMELLDAEF	9	Unmodified	_AMELLDAEF_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.74425045135	2	519.74425	1037.47395	1.6089	0.00083623	-0.51189	-0.00026605	1.097	0.00057018	519.7453007872697	24.912	0.072409	24.912	24.888	24.96	0	1305	34	0.83389086	0.020299077	0.83389086	338.44186	0	8.238586						69	4	2	NaN	NaN	NaN	0.39244	1	10093	10093		14.042	2.4931	1	6610	+		679	9945	425	430	503	503					-0.04329004656597135
AMELLDAEF	9	Unmodified						0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	519.74425	1037.47395	1.6089	0.00083623	-0.51189	-0.00026605	1.097	0.00057018	519.7453007872697	24.912	0.072409	24.912	24.888	24.96	0	1305	34	0.83389086	0.020299077	0.83389086	338.44186		8.238586	-0.0057745	0.00053748	0.00075972	NaN	14.042	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6610	+		680	9945	425	430							-0.04329004656597135
AMGIFYLIF	9	Unmodified	_AMGIFYLIF_					0	0	0			REV__ENSG00000121318|ENST00000240619|TAS2R10	REV__ENSG00000121318|ENST00000240619|TAS2R10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7882640245	2	537.788264	1073.56198	1.1669	0.00062755	1.5446	0.00083066	2.7115	0.0014582	537.788315093435	37.314	0.16846	37.314	37.241	37.41	0	1239	52	0.87444305	0.03129685	0.87444305	354.74402	0	12.696503						174	8	2	NaN	NaN	NaN	0.36886	1	11718	11718		15.013	0.97131	1	13818	+		681	9330	426	431	504	504					0.028136607246551648
AMGQAMFDLSL	11	Unmodified	_AMGQAMFDLSL_					0	0	0			REV__ENST00000477216.1_1_3:170077681-170077735:+|nuORF	REV__ENST00000477216.1_1_3:170077681-170077735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.2779344807001	2	592.277934	1182.54132	1.8629	0.0011033	-9.7685	-0.0057857	-7.9056	-0.0046823	592.7735081045842	17.909	0.095945	17.909	17.885	17.981	0	1197	61	0.9001988	0.036782026	0.9001988	364.76602	0	14.904297						85	5	2	NaN	NaN	NaN	0.73057	1	15908	15908		5.4499	0.26105	1	6226	+		682	12357	427	432	505	505					-0.042652977172792816
AMIKTYVVP	9	Unmodified	_AMIKTYVVP_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.2911708542	2	511.291171	1020.56779	1.9225	0.00098294	-10.154	-0.0051919	-8.232	-0.0042089	511.28557161817747	22.284	0.096487	22.284	22.236	22.332	0	1278	70	0.85049206	0.042425334	0.85049206	345.25452	0	17.222412						124	5	3	NaN	NaN	NaN	0.62619	1	9395	9395		4.4131	1.2015	1	11395			683	7977	428	433	506	506					0.058327592363411895
AMKLVTKH	8	Unmodified	_AMKLVTKH_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.27585514099997	2	464.275855	926.537157	1.5064	0.00069937	4.1042	0.0019055	5.6106	0.0026049	464.2778746710977	17.933	0.072018	17.933	17.933	18.005	0	1335	43	0.8154261	0.025867462	0.8154261	331.46616	0	10.514954						69	4	2	NaN	NaN	NaN	0.84756	1	6527	6527		1.072	0.67635	1	6404.5			684	4974	429	434	507	507					0.07095025641956454
AMKLVTKH	8	Unmodified						0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	464.275855	926.537157	1.5535	0.00072126	3.8065	0.0017673	5.36	0.0024885	464.2773674476565	17.978	0.071995	17.964	17.94	18.012	-0.013786	1341	43	0.8117308	0.025867462	0.81021136	329.96402		10.514954	0.015555	-0.00012667	-0.0026074	NaN	1.072	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5592.4			685	4974	429	434							0.07095025641956454
AMVIGGGDA	9	Unmodified	_AMVIGGGDA_					0	0	0			REV__ENST00000355683.9_2_14:31495536-31495596:-|nuORF	REV__ENST00000355683.9_2_14:31495536-31495596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.3763654341001	1	790.376365	789.369089	1.6193	0.0012798	4.7954	0.0037902	6.4147	0.00507	790.3810546935877	26.795	0.12115	26.795	26.746	26.867	0	519	94	1.310647	0.055660248	1.310647	267.06638	0	11.341705						251	6	3	NaN	NaN	NaN	0.53206	1	4617	4617		8.2903	0.74991	1	20663	+		686	11815	430	435	508	508					-0.03402081342494512
AMVIGGGDA	9	Unmodified						0	0	0			REV__ENST00000355683.9_2_14:31495536-31495596:-|nuORF	REV__ENST00000355683.9_2_14:31495536-31495596:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	790.376365	789.369089	1.6193	0.0012798	4.7954	0.0037902	6.4147	0.00507	790.3810546935877	26.795	0.12115	26.795	26.746	26.867	0	519	94	1.310647	0.055660248	1.310647	267.06638		11.341705	-0.0063293	0.00012286	-0.00013736	NaN	8.2903	251	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20663	+		687	11815	430	435							-0.03402081342494512
AMYPVCIL	8	Unmodified	_AMYPVCIL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.2322673793	2	455.232267	908.449982	1.098	0.00049983	-10.37	-0.0047207	-9.272	-0.0042209	455.228187535502	15.702	0.168	15.702	15.678	15.846	0	1386	43	0.78399014	0.025909483	0.78399014	318.78036	0	10.535156						153	8	3	NaN	NaN	NaN	0.77734	1	6205	6205		12.26	0	1	13463	+		688	10023	431	436	509	509					-0.00790516623953863
ANEGLVYF	8	Unmodified	_ANEGLVYF_					0	0	0			REV__nc|ENSG00000157796|Q8NEZ3-2|WDR19	REV__nc|ENSG00000157796|Q8NEZ3-2|WDR19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4461595588	1	912.44616	911.438883	1.8305	0.0016702	-0.34614	-0.00031583	1.4844	0.0013544	912.4458483114345	23.995	0.19302	23.995	23.947	24.14	0	333	85	1.4215236	0.0499295	1.4215236	288.99536	0	10.150635						391	9	3	NaN	NaN	NaN	0.63138	1	6243	6243		23.334	5.5355	1	59979	+		689	10155	432	437	510	510					-0.0203787940224629
ANHQCQSCAGT	11	Unmodified	_ANHQCQSCAGT_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.8150518524333	3	373.815052	1118.42333	1.8011	0.00067328	-0.0061102	-2.2841E-06	1.795	0.00067099	374.14851542223533	29.328	0.12063	29.32	29.248	29.368	-0.0077209	1500	31	0.71351165	0.018585265	0.7119922	433.96063	0	11.303619						64	6	2	NaN	NaN	NaN	0.72342	1	13197	13197		2.5605	0.22239	1	4103.1	+		690	9853	433	438	511	511					-0.13114857253231094
ANHSLRELDL	10	Unmodified	_ANHSLRELDL_					0	0	0		ENST00000525701.5_1_11:494693-500690:-|nuORF;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525701.5_1_11:494693-500690:-|nuORF	ENST00000525701.5_1_11:494693-500690:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.87540489696664	3	389.875405	1166.60439	1.2497	0.00048724	3.8135	0.0014868	5.0633	0.001974	389.87715235762823	13.445	0.14398	13.435	13.387	13.531	-0.010098	1479	46	0.72651637	0.027855158	0.7249969	441.6483	0	16.933105						166	7	3	NaN	NaN	NaN	0.5626	1	14835	14835		13.638	4.7186	1	14638			691	7425	434	439	512	512					0.02774727386622544
ANPDLSAVL	9	Unmodified	_ANPDLSAVL_					0	0	0		ENST00000427137.1_1_7:46039864-46040332:-|nuORF	ENST00000427137.1_1_7:46039864-46040332:-|nuORF	ENST00000427137.1_1_7:46039864-46040332:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4832733466002	1	899.483273	898.475997	2.5596	0.0023023	-2.2401	-0.002015	0.31944	0.00028734	899.4823504955942	25.66	0.072353	25.648	25.624	25.696	-0.011602	357	40	1.407258	0.023192525	1.4057386	286.1566	0	4.7160645						68	4	2	NaN	NaN	NaN	0.089764	1	5928	5928		37.302	2.8636	1	4725			692	6949	435	440	513	513					0.022697921435337776
ANPDLSAVL	9	Unmodified						0	0	0		ENST00000427137.1_1_7:46039864-46040332:-|nuORF	ENST00000427137.1_1_7:46039864-46040332:-|nuORF	ENST00000427137.1_1_7:46039864-46040332:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	899.483273	898.475997	2.2113	0.001989	1.3384	0.0012039	3.5497	0.0031929	899.483790814016	25.636	0.04829	25.636	25.636	25.684	0	357	46	1.407258	0.026760697	1.407258	286.1566		5.44162	-0.0061371	0.0016736	0.00075972	NaN	37.302	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4637.7			693	6949	435	440							0.022697921435337776
ANPKPTMV	8	Unmodified	_ANPKPTMV_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4549501061	1	857.45495	856.447674	1.0814	0.00092721	3.7923	0.0032517	4.8737	0.004179	857.4585312667414	35.866	0.14455	35.867	35.819	35.964	0.0011024	507	40	1.3178225	0.023316503	1.316303	268.16873	0	4.744751						108	7	2	NaN	NaN	NaN	0.8439	1	5354	5354		3.1533	0	1	7765.9	+		694	9363	436	441	514	514					0.013707709625805364
ANRAILDP	8	Unmodified	_ANRAILDP_					0	0	0		ENST00000554869.5_1_14:50079291-50081129:+|nuORF	ENST00000554869.5_1_14:50079291-50081129:+|nuORF	ENST00000554869.5_1_14:50079291-50081129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.24560925759994	2	435.245609	868.476666	1.4528	0.00063233	1.154	0.00050227	2.6068	0.0011346	435.24633916830487	25.129	0.07233	25.117	25.069	25.141	-0.012011	1428	43	0.7580582	0.025948882	0.75653875	308.4472	0	10.55835						69	4	2	NaN	NaN	NaN	0.84727	1	5503	5503		1.2418	0	1	7647			695	7567	437	442	515	515					0.03716631583222352
ANSNTKGS	8	Unmodified	_ANSNTKGS_					0	0	0			REV__ENST00000545556.6_1_12:123699379-123710843:-|nuORF	REV__ENST00000545556.6_1_12:123699379-123710843:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.68812416845	2	389.688124	777.361695	1.1694	0.00045569	-4.6269	-0.0018031	-3.4576	-0.0013474	389.68634827418333	26.77	0.19353	26.77	26.722	26.915	0	1605	34	0.64833945	0.020522833	0.64833945	264.284	0	8.365753						104	9	2	NaN	NaN	NaN	0.84782	1	4456	4456		0.92586	0	1	8192.7	+		696	8496	438	443	516	516					-0.03589097618566939
APAAFYGG	8	Unmodified	_APAAFYGG_					0	0	0			REV__nc|ENSG00000081913|O60346-2|PHLPP1	REV__nc|ENSG00000081913|O60346-2|PHLPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3566162700001	1	753.356616	752.34934	1.4608	0.0011005	-2.7797	-0.0020941	-1.3189	-0.00099358	753.3543042589113	45.694	0.19214	45.694	45.646	45.838	0	669	61	1.2206948	0.036080956	1.2206948	248.94624	0	7.3582916						138	9	2	NaN	NaN	NaN	0.84876	1	4100	4100		0.39566	0	1	19416	+		697	8666	439	444	517	517					-0.03674089290950633
APAAHGGV	8	Unmodified	_APAAHGGV_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3521995941002	1	679.3522	678.344923	1.7817	0.0012104	-1.1594	-0.00078761	0.62234	0.00042279	679.3517397661084	53.242	0.096043	53.242	53.17	53.266	0	651	193	1.2315145	0.115434766	1.2315145	251.64273	0	23.587479						417	5	3	NaN	NaN	NaN	0.84876	1	2802	2802		0.39566	0	1	80735	+		698	9213	440	445	518	518					-0.007115537138474792
APAAHGGV	8	Unmodified	_APAAHGGV_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3521995941002	1	679.3522	678.344923	1.6152	0.0010973	-0.88591	-0.00060184	0.72933	0.00049547	679.3511707158038	53.506	0.09581	53.506	53.482	53.578	0	669	82	1.2206948	0.048732758	1.2206948	249.43188	0	9.9578705						219	5	4	NaN	NaN	NaN	0.84876	1	2803	2803		0.39566	0	1	20779	+		699	9213	440	445	519	519					-0.007115537138474792
APAAHGGV	8	Unmodified						0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	679.3522	678.344923	1.6152	0.0010973	-0.88591	-0.00060184	0.72933	0.00049547	679.3511707158038	53.506	0.09581	53.506	53.482	53.578	0	669	82	1.2206948	0.048732758	1.2206948	249.43188		9.9578705	0.0011108	-0.00099786	0.00075972	NaN	0.39566	219	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20779	+		700	9213	440	445							-0.007115537138474792
APAAHGGV	8	Unmodified						0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.3522	678.344923	-0.48613	-0.00033025	2.0041	0.0013615	1.5179	0.0010312	679.3540864364386	53.504	0.095867	53.504	53.48	53.576	-0.00053787	669	97	1.2206948	0.057779074	1.2191753	249.43187		11.806335	-0.0011108	0.00096546	-0.00075972	NaN	0.39566	185	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13621	+		701	9213	440	445							-0.007115537138474792
APACRVQL	8	Unmodified	_APACRVQL_					0	0	0			REV__ENST00000361927.8_1_1:184006627-184006753:-|nuORF	REV__ENST00000361927.8_1_1:184006627-184006753:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4661834944001	1	857.466183	856.458907	1.1047	0.00094728	-9.8071	-0.0084092	-8.7023	-0.0074619	857.4573540329262	34.998	0.096519	34.998	34.95	35.046	-4.5776E-05	522	58	1.3088527	0.034085274	1.3073332	266.34344	0	6.9361267						114	5	2	NaN	NaN	NaN	0.84207	1	5353	5353		3.5732	0	1	10226	+		702	11850	441	446	520	520					0.02493593056726695
APADPEMVTL	10	Unmodified	_APADPEMVTL_					0	0	0		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5077735376	1	1043.50777	1042.5005	1.9074	0.0019904	-0.7595	-0.00079255	1.1479	0.0011978	1043.5078249014784	25.274	0.1689	25.274	25.178	25.346	0	183	70	1.510409	0.04078102	1.510409	306.4908	0	8.275269						206	8	3	NaN	NaN	NaN	0.050502	1	10316	10316		52.78	28.218	1	17267			703	491	442	447	521	521					-0.019053157652479058
APADPEMVTL	10	Unmodified	_APADPEMVTL_					0	0	0		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5077735376	1	1043.50777	1042.5005	1.7746	0.0018518	-0.25708	-0.00026826	1.5175	0.0015836	1043.507470483189	25.274	0.14472	25.262	25.214	25.358	-0.012011	180	79	1.5121819	0.046102762	1.5106624	306.8506	0	9.355133						217	7	3	NaN	NaN	NaN	0.25724	1	10110	10110		30.61	8.7751	1	18103			704	491	442	447	522	522					-0.019053157652479058
APADPGKA	8	Unmodified	_APADPGKA_					0	0	0		ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3780799936001	1	726.37808	725.370804	1.2304	0.00089374	6.0029	0.0043604	7.2333	0.0052541	726.38275894111	32.587	0.28957	32.587	32.514	32.804	0	600	82	1.2621325	0.04861307	1.2621325	257.56824	0	9.920654						349	13	3	NaN	NaN	NaN	0.82332	1	3695	3695		6.0903	0.62448	1	60622			705	4509	443	448	523	523					-0.0028670426223698087
APADPGKA	8	Unmodified						0	0	0		ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.37808	725.370804	2.2255	0.0016166	5.8154	0.0042242	8.0409	0.0058407	726.3859928306651	32.73	0.048279	32.727	32.727	32.776	-0.0031052	609	34	1.2567334	0.019798994	1.255214	256.46643		4.040451	0.070319	-0.00011053	-0.0034593	NaN	6.0903	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2041.6			706	4509	443	448							-0.0028670426223698087
APAEDPVFTIL	11	Unmodified	_APAEDPVFTIL_					0	0	0		ENSG00000119559|ENST00000585675|C19orf25;nc|nan|Q9UFG5-2|C19orf25;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENST00000589421.1_1_19:1478470-1478902:-|nuORF	ENSG00000119559|ENST00000585675|C19orf25	ENSG00000119559|ENST00000585675|C19orf25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1172.6197668280001	1	1172.61977	1171.61249	1.9106	0.0022404	0.050373	5.9068E-05	1.961	0.0022995	1172.6180694991695	33.456	0.072414	33.456	33.407	33.48	0	60	76	1.582944	0.04415381	1.582944	320.74692	0	8.946716						114	4	2	NaN	NaN	NaN	0.15564	1	15547	15547		34.454	18.991	1	11242			707	2219	444	449	524	524					0.033548615833979056
APAEDPVFTIL	11	Unmodified	_APAEDPVFTIL_					0	0	0		ENSG00000119559|ENST00000585675|C19orf25;nc|nan|Q9UFG5-2|C19orf25;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENST00000589421.1_1_19:1478470-1478902:-|nuORF	ENSG00000119559|ENST00000585675|C19orf25	ENSG00000119559|ENST00000585675|C19orf25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1172.6197668280001	1	1172.61977	1171.61249	1.4552	0.0017063	0.25154	0.00029496	1.7067	0.0020013	1172.6205634610103	33.43	0.072403	33.428	33.404	33.476	-0.0018501	60	73	1.582944	0.04238093	1.5814246	320.74692	0	8.587524						136	4	3	NaN	NaN	NaN	0.076968	1	15001	15001		42.995	15.699	1	8999			708	2219	444	449	525	525					0.033548615833979056
APAGAGGK	8	Unmodified	_APAGAGGK_					0	0	0		ENST00000602462.1_1_7:100845744-100846490:-|nuORF	ENST00000602462.1_1_7:100845744-100846490:-|nuORF	ENST00000602462.1_1_7:100845744-100846490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.3413005568001	1	628.341301	627.334024	1.3083	0.00082204	-1.1004	-0.00069141	0.20789	0.00013062	628.3406615895848	32.587	0.072376	32.587	32.514	32.587	0	1137	79	0.9369253	0.047677517	0.9369253	191.75507	0	9.757874						90	4	2	NaN	NaN	NaN	0.84692	1	1346	1346		1.4396	0	1	7710.7			709	7771	445	450	526	526					0.005450439118590111
APALEYETL	9	Unmodified	_APALEYETL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST	nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001-14|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5091537461002	1	1006.50915	1005.50188	1.7033	0.0017144	-0.17764	-0.0001788	1.5257	0.0015356	1006.5085779671555	24.888	0.048258	24.875	24.851	24.9	-0.012394	213	61	1.4926696	0.035505056	1.4911501	303.03668	0	7.20813						97	3	3	NaN	NaN	NaN	0.29681	1	8627	8627		19.118	6.1155	1	8483.5			710	3759	446	451	527	527					-0.0006535840484502842
APAPAEAEL	9	Unmodified	_APAPAEAEL_					0	0	0		ENSG00000185670|ENST00000394807|ZBTB3;nc|ENSG00000185670|Q9H5J0|ZBTB3	ENSG00000185670|ENST00000394807|ZBTB3	ENSG00000185670|ENST00000394807|ZBTB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4410741809	1	868.441074	867.433798	1.9022	0.0016519	-0.99502	-0.00086412	0.90717	0.00078782	868.4411535766785	19.396	0.07202	19.396	19.372	19.444	0	477	43	1.3357477	0.02507925	1.3357477	271.76202	0	5.1024475						62	4	2	NaN	NaN	NaN	0.58159	1	5631	5631		6.2502	2.2817	1	3395.2			711	5428	447	452	528	528					-0.005221832648544478
APAPASEL	8	Unmodified	_APAPASEL_					0	0	0			REV__nc|ENSG00000160271|Q12967-4|RALGDS	REV__nc|ENSG00000160271|Q12967-4|RALGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3933957068001	1	755.393396	754.386119	1.2536	0.00094699	4.3934	0.0033187	5.647	0.0042657	755.3959748829882	32.37	0.16889	32.37	32.345	32.514	0	537	52	1.2998781	0.030520082	1.2998781	265.08188	0	6.2239075						183	8	3	NaN	NaN	NaN	0.76633	1	4143	4143		13.737	0	1	18522	+		712	13150	448	453	529	529					-0.0008983746504327428
APAPASEL	8	Unmodified	_APAPASEL_					0	0	0			REV__nc|ENSG00000160271|Q12967-4|RALGDS	REV__nc|ENSG00000160271|Q12967-4|RALGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068001	1	755.393396	754.386119	1.0567	0.0007982	4.6507	0.0035131	5.7073	0.0043113	755.3971419481157	32.369	0.1689	32.365	32.341	32.51	-0.0037613	537	64	1.2998781	0.03770125	1.2983587	265.08188	0	7.6883545						199	8	3	NaN	NaN	NaN	0.76633	1	4064	4064		13.737	0	1	21235	+		713	13150	448	453	530	530					-0.0008983746504327428
APAPASEL	8	Unmodified						0	0	0			REV__nc|ENSG00000160271|Q12967-4|RALGDS	REV__nc|ENSG00000160271|Q12967-4|RALGDS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.393396	754.386119	1.2536	0.00094699	4.3934	0.0033187	5.647	0.0042657	755.3959748829882	32.37	0.16889	32.37	32.345	32.514	0	537	52	1.2998781	0.030520082	1.2998781	265.08188		6.2239075	0.0024316	-0.00013252	0.00075972	NaN	13.737	183	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18522	+		714	13150	448	453							-0.0008983746504327428
APAPASEL	8	Unmodified						0	0	0			REV__nc|ENSG00000160271|Q12967-4|RALGDS	REV__nc|ENSG00000160271|Q12967-4|RALGDS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	755.393396	754.386119	1.0567	0.0007982	4.6507	0.0035131	5.7073	0.0043113	755.3971419481157	32.369	0.1689	32.365	32.341	32.51	-0.0037613	537	64	1.2998781	0.03770125	1.2983587	265.08188		7.6883545	-0.0024316	6.1858E-05	-0.00075972	NaN	13.737	199	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21235	+		715	13150	448	453							-0.0008983746504327428
APAPASISL	9	Unmodified	_APAPASISL_					0	0	0		ENST00000464763.5_1_2:220094544-220095147:+|nuORF;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000486203.5_1_2:220094592-220097474:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1	ENST00000464763.5_1_2:220094544-220095147:+|nuORF	ENST00000464763.5_1_2:220094544-220095147:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	826.4668950009001	1	826.466895	825.459619	2.1953	0.0018144	0.44983	0.00037177	2.6452	0.0021861	826.4671674842059	23.441	0.072426	23.441	23.417	23.489	0	483	58	1.3321642	0.03403437	1.3321642	271.24792	0	6.929901						73	4	2	NaN	NaN	NaN	0.032764	1	5097	5097		55.494	16.035	1	5018.6			716	4236	449	454	531	531					0.03990710977427625
APAPASISL	9	Unmodified	_APAPASISL_					0	0	0		ENST00000464763.5_1_2:220094544-220095147:+|nuORF;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000486203.5_1_2:220094592-220097474:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1	ENST00000464763.5_1_2:220094544-220095147:+|nuORF	ENST00000464763.5_1_2:220094544-220095147:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	826.4668950009001	1	826.466895	825.459619	2.2846	0.0018882	-2.4836	-0.0020526	-0.199	-0.00016446	826.4657646204396	23.465	0.096539	23.451	23.427	23.524	-0.013294	477	43	1.3357477	0.025081873	1.3342283	271.9776	0	5.1070557						70	5	2	NaN	NaN	NaN	0.030391	1	4976	4976		58.599	11.463	1	4937.6			717	4236	449	454	532	532					0.03990710977427625
APAPESITL	9	Unmodified	_APAPESITL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.4880243735	1	898.488024	897.480748	1.8868	0.0016953	0.19234	0.00017282	2.0792	0.0018681	898.4880832870915	23.803	0.16864	23.803	23.754	23.923	0	366	97	1.4019053	0.057129025	1.4019053	285.0729	0	11.617004						343	8	3	NaN	NaN	NaN	0.014046	1	6025	6025		80.639	30.806	1	61106			718	107	450	455	533	533					0.027906762862812684
APAPESITL	9	Unmodified	_APAPESITL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.4880243735	1	898.488024	897.480748	1.7902	0.0016085	-0.62721	-0.00056354	1.163	0.0010449	898.4874022451493	23.826	0.16871	23.813	23.741	23.91	-0.013048	363	79	1.4036897	0.046402454	1.4021703	285.43576	0	9.435791						327	8	4	NaN	NaN	NaN	0.043119	1	5911	5911		49.833	0	1	55148			719	107	450	455	534	534					0.027906762862812684
APAPKAYVL	9	Unmodified	_APAPKAYVL_					0	0	0		ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.27637806975	2	465.276378	928.538203	1.5088	0.00070202	-1.0712	-0.0004984	0.43763	0.00020362	465.27619929260067	18.796	0.096027	18.796	18.772	18.868	0	1326	40	0.8209676	0.024010658	0.8209676	333.70828	0	9.759888						86	5	2	NaN	NaN	NaN	0.33629	1	6566	6566		16.584	3.5813	1	10220			720	5343	451	456	535	535					0.07107563282522733
APAPKAYVL	9	Unmodified						0	0	0		ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	ENSG00000184207|ENST00000333503|PGP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.276378	928.538203	0.99004	0.00046064	-2.2571	-0.0010502	-1.2671	-0.00058954	465.27443996415434	18.818	0.096071	18.804	18.78	18.876	-0.014059	1326	43	0.8209676	0.025858998	0.81944823	333.70828		10.5112	0.0036698	-0.00059031	-0.00075972	NaN	16.584	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9919.1			721	5343	451	456							0.07107563282522733
APAPLHLG	8	Unmodified	_APAPLHLG_					0	0	0			REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4460999793002	1	775.4461	774.438824	2.3184	0.0017978	-0.13617	-0.00010559	2.1822	0.0016922	775.445994479494	25.708	0.16888	25.708	25.684	25.853	0	1266	205	0.85786515	0.12551993	0.85786515	174.86206	0	25.58522						468	8	3	NaN	NaN	NaN	0.84876	1	4427	4427		0.39566	0	1	78105	+		722	11731	452	457	536	536					0.04258165388432644
APAPLHLG	8	Unmodified						0	0	0			REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.4461	774.438824	2.3184	0.0017978	-0.13617	-0.00010559	2.1822	0.0016922	775.445994479494	25.708	0.16888	25.708	25.684	25.853	0	1266	205	0.85786515	0.12551993	0.85786515	174.86206		25.58522	-0.018187	-0.00041609	0.00075972	NaN	0.39566	468	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78105	+		723	11731	452	457							0.04258165388432644
APAPLHLG	8	Unmodified						0	0	0			REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.4461	774.438824	2.3184	0.0017978	0.94531	0.00073304	3.2638	0.0025309	775.447137858003	25.756	0.1931	25.745	25.696	25.89	-0.0116	1266	124	0.85786515	0.07556236	0.8563457	174.86206		15.402176	0.018187	0.00042254	-0.00075972	NaN	0.39566	426	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69377	+		724	11731	452	457							0.04258165388432644
APAPTAVVL	9	Unmodified	_APAPTAVVL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	838.5032805072002	1	838.503281	837.496004	1.4141	0.0011858	0.26846	0.0002251	1.6826	0.0014109	838.5041404093615	24.381	0.048246	24.381	24.357	24.406	0	468	37	1.3411216	0.021491885	1.3411216	273.0075	0	4.3750305						57	3	2	NaN	NaN	NaN	0.31737	1	5231	5231		17.799	8.053	1	4387.5			725	1777	453	458	537	537					0.0707558787414655
APAPTAVVL	9	Unmodified						0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	838.503281	837.496004	1.7529	0.0014698	-0.16043	-0.00013452	1.5925	0.0013353	838.5043117214213	24.381	0.072412	24.368	24.344	24.417	-0.012749	468	37	1.3411216	0.02148974	1.3396021	273.0075		4.3745728	-0.0064931	-0.00022568	-0.00075972	NaN	17.799	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3562.4			726	1777	453	458							0.0707558787414655
APAPTYPS	8	Unmodified	_APAPTYPS_					0	0	0			REV__ENST00000471095.5_1_3:141713860-141724285:-|nuORF	REV__ENST00000471095.5_1_3:141713860-141724285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3933957068001	1	803.393396	802.386119	1.8748	0.0015062	-2.1025	-0.0016891	-0.22772	-0.00018295	803.3920637575061	19.803	0.14442	19.789	19.717	19.861	-0.014141	504	40	1.3196158	0.023314	1.3180964	268.8194	0	4.749298						101	7	2	NaN	NaN	NaN	0.72043	1	4683	4683		17.78	2.6049	1	7859.4	+		727	9163	454	459	538	538					-0.022978374650392652
APAQPACP	8	Unmodified	_APAQPACP_					0	0	0		ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3552360615	1	754.355236	753.34796	1.6608	0.0012528	4.1969	0.0031659	5.8576	0.0044187	754.3596840352939	28.846	0.096537	28.846	28.822	28.918	0	603	40	1.2603331	0.023396254	1.2603331	257.02383	0	4.771286						51	5	2	NaN	NaN	NaN	0.84876	1	4118	4118		0.39566	0	1	2896.2			728	40	455	460	539	539					-0.038580466513622014
APASGEMTM	9	Unmodified	_APASGEMTM_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.3695654967003	1	894.369565	893.362289	2.1213	0.0018972	-0.5979	-0.00053475	1.5234	0.0013625	894.3695658807854	17.789	0.14382	17.789	17.693	17.837	0	432	55	1.3625998	0.032193303	1.3625998	277.09955	0	6.5468445						136	7	2	NaN	NaN	NaN	0.036546	1	5967	5967		52.624	27.663	1	13550			729	5047	456	461	540	540					-0.08865762285358869
APASGEMTM	9	Unmodified	_APASGEMTM_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.3695654967003	1	894.369565	893.362289	1.8563	0.0016602	0.44184	0.00039516	2.2982	0.0020554	894.3699799618933	17.762	0.21584	17.748	17.676	17.892	-0.013786	426	49	1.3661768	0.02861631	1.3646574	277.827	0	5.8194275						163	10	2	NaN	NaN	NaN	0.036546	1	5852	5852		52.624	29.29	1	13693			730	5047	456	461	541	541					-0.08865762285358869
APASTASGAA	10	Unmodified	_APASTASGAA_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3893729614001	1	803.389373	802.382096	2.1248	0.0017071	4.1628	0.0033444	6.2876	0.0050514	803.3927888478903	19.78	0.14411	19.78	19.732	19.876	0	507	55	1.3178225	0.032289624	1.3178225	268.45404	0	6.5777283						134	7	2	NaN	NaN	NaN	0.5917	1	4775	4775		15.463	0.28729	1	10417			731	5394	457	462	542	542					-0.02699926958746346
APASTASGAA	10	Unmodified						0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	803.389373	802.382096	1.8748	0.0015062	2.9047	0.0023336	4.7795	0.0038398	803.3920637575061	19.803	0.14442	19.789	19.717	19.861	-0.014141	504	40	1.3196158	0.023314	1.3180964	268.8194		4.749298	0.0045148	-0.00071287	0.00013697	NaN	15.463	101	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7859.4			732	5394	457	462							-0.02699926958746346
APASVETPL	9	Unmodified	_APASVETPL_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.4723743093001	1	884.472374	883.465098	1.5952	0.0014109	-0.5471	-0.0004839	1.0481	0.00092699	884.4713550624493	21.079	0.12043	21.079	21.031	21.151	0	414	55	1.3733286	0.032176137	1.3733286	279.32883	0	6.5444946						104	6	2	NaN	NaN	NaN	0.23112	1	5844	5844		23.334	2.779	1	7725.1			733	3843	458	463	543	543					0.01870389769248959
APASVSPD	8	Unmodified	_APASVSPD_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3570102005001	1	743.35701	742.349734	0.65694	0.00048834	8.2715	0.0061487	8.9285	0.0066371	743.3625514803823	38.275	0.2883	38.275	38.131	38.42	0	573	76	1.2783196	0.04494965	1.2783196	260.76093	0	9.169144						339	13	2	NaN	NaN	NaN	0.8439	1	3947	3947		3.1533	0	1	36310			734	2569	459	464	544	544					-0.0317471436175083
APAVPGCG	8	Unmodified	_APAVPGCG_					0	0	0			REV__ENST00000560518.1_1_15:52472518-52472599:+|nuORF	REV__ENST00000560518.1_1_15:52472518-52472599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.0221	0.00034361	6.4283	0.002161	7.4505	0.0025046	336.16501289806746	41.953	0.19176	41.962	41.962	42.154	0.0089951	1521	64	0.70049703	0.039065063	0.6989776	286.3327	0	15.968109						253	9	2	NaN	NaN	NaN	0.84876	1	2521	2521		0.39566	0	1	32007	+		735	12780	460	465	545	545					-0.03749718197116181
APAYLIDLM	9	Unmodified	_APAYLIDLM_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5277806982001	1	1006.52778	1005.5205	1.1652	0.0011728	1.491	0.0015007	2.6562	0.0026736	1006.5304010028651	32.997	0.1207	32.997	32.949	33.069	0	180	79	1.5121819	0.0460881	1.5121819	306.9979	0	9.356659						169	6	2	NaN	NaN	NaN	0.056143	1	8802	8802		44.302	5.3845	1	14735			736	847	461	466	546	546					0.01796479965355502
APAYLIDLM	9	Unmodified						0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1006.52778	1005.5205	1.2091	0.001217	-0.40184	-0.00040446	0.80731	0.00081258	1006.5278385548454	32.972	0.12053	32.969	32.945	33.066	-0.0024757	177	91	1.5139546	0.053189874	1.5124352	307.3578		10.798431	-0.013859	-0.00083728	0.00012664	NaN	44.302	219	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17119			737	847	461	466							0.01796479965355502
APDAFDIVAM	10	Unmodified	_APDAFDIVAM_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.4972088512998	1	1049.49721	1048.48993	1.4523	0.0015241	2.9059	0.0030497	4.3581	0.0045739	1049.5002590552017	31.115	0.21718	31.115	31.066	31.284	0	147	109	1.5316714	0.063753486	1.5316714	310.78217	0	12.935852						302	10	2	NaN	NaN	NaN	0.088985	1	10562	10562		47.482	19.693	1	50797			738	5332	462	467	547	547					-0.03237298419708168
APDAFDIVAM	10	Oxidation (M)	_APDAFDIVAM(Oxidation (M))_		APDAFDIVAM(1)		APDAFDIVAM(58)	0	0	1		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4921234733997	1	1065.49212	1064.48485	1.7854	0.0019023	0.73176	0.00077968	2.5171	0.002682	1065.493193820151	26.795	0.16943	26.795	26.722	26.891	0	183	124	1.510409	0.07266593	1.510409	306.40814	0	14.7413025						462	8	3	NaN	NaN	NaN	0.033206	1	11317	11317		58.235	29.74	1	58814			739	5332	462	468	548	548		557			-0.04481602282339736
APDAVYTEL	9	Unmodified	_APDAVYTEL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4778536176999	1	978.477854	977.470577	1.8931	0.0018523	0.062282	6.0942E-05	1.9554	0.0019133	978.4778335980488	23.899	0.16883	23.899	23.851	24.019	0	255	82	1.4678029	0.048010826	1.4678029	298.10388	0	9.750763						332	8	3	NaN	NaN	NaN	0.04947	1	7808	7808		47.136	21.021	1	45386			740	1037	463	469	549	549					-0.019059314389664905
APDAVYTEL	9	Unmodified	_APDAVYTEL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4778536176999	1	978.477854	977.470577	1.9337	0.0018921	0.18507	0.00018108	2.1188	0.0020732	978.4777380001318	23.899	0.16882	23.886	23.837	24.006	-0.01305	252	70	1.4695803	0.04088509	1.4680609	298.46484	0	8.303558						321	8	3	NaN	NaN	NaN	0.021751	1	7649	7649		69.782	22.742	1	41759			741	1037	463	469	550	550					-0.019059314389664905
APDEAAEAL	9	Unmodified	_APDEAAEAL_					0	0	0		ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4152533609	1	886.415253	885.407977	2.4085	0.0021349	-0.53187	-0.00047146	1.8766	0.0016634	886.4145875309727	18.94	0.19198	18.94	18.868	19.06	0	426	115	1.3661768	0.06800723	1.3661768	277.86484	0	13.831879						641	9	4	NaN	NaN	NaN	0.025843	1	5872	5872		64.55	0	1	134800			742	3380	464	470	551	551					-0.03931077507138525
APDEETLIAL	10	Unmodified	_APDEETLIAL_					0	0	0		ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5568322202	1	1071.55683	1070.54956	1.3035	0.0013968	-3.6868	-0.0039506	-2.3833	-0.0025539	1071.5545104772766	28.99	0.072371	28.982	28.982	29.055	-0.0077229	111	37	1.5529068	0.021217346	1.5513873	315.00662	0	4.303955						69	4	2	NaN	NaN	NaN	0.2358	1	11289	11289		32.453	10.682	1	6584.8			743	3314	465	471	552	552					0.017102957953511577
APDEIPYLL	9	Unmodified	_APDEIPYLL_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5455392524	1	1030.54554	1029.53826	1.1681	0.0012038	-0.10149	-0.00010459	1.0666	0.0010992	1030.5455958140064	31.694	0.16896	31.694	31.621	31.79	0	162	88	1.5228153	0.051403165	1.5228153	309.0591	0	10.432404						285	8	2	NaN	NaN	NaN	0.032417	1	9759	9759		55.947	17.029	1	51519			744	2353	466	472	553	553					0.024675184918578452
APDELAIQ	8	Unmodified	_APDELAIQ_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4410741809	1	856.441074	855.433798	1.7672	0.0015135	1.7326	0.0014838	3.4997	0.0029973	856.4419171302717	21.416	0.096283	21.402	21.378	21.475	-0.014004	408	37	1.3769034	0.021446228	1.375384	280.19656	0	4.3642273						72	5	2	NaN	NaN	NaN	0.75561	1	5333	5333		15.175	1.1338	1	4453.7			745	3867	467	473	554	554					0.00029816735138865624
APDGKSYLL	9	Unmodified	_APDGKSYLL_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.2609249708	2	482.260925	962.507297	1.925	0.00092833	-0.62199	-0.00029996	1.303	0.00062837	482.26070384009057	19.732	0.19212	19.732	19.66	19.852	0	1347	43	0.8080346	0.025873005	0.8080346	328.28217	0	10.511505						204	9	3	NaN	NaN	NaN	0.13999	1	7409	7409		30.035	5.0744	1	23453			746	3809	468	474	555	555					0.02454365177618456
APDIDVQL	8	Unmodified	_APDIDVQL_					0	0	0		ENSG00000105373|ENST00000246802|NOP53;ENST00000600410.5_1_19:48257983-48259211:+|nuORF	ENSG00000105373|ENST00000246802|NOP53	ENSG00000105373|ENST00000246802|NOP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4567242451002	1	870.456724	869.449448	2.3149	0.002015	-0.73842	-0.00064276	1.5765	0.0013723	870.4562245529199	25.805	0.36194	25.805	25.684	26.046	0	369	100	1.4001206	0.05893624	1.4001206	284.8486	0	11.990326						615	16	3	NaN	NaN	NaN	0.05596	1	5657	5657		76.739	21.246	1	137080			747	1531	469	475	556	556					0.00950103252205281
APDIDVQL	8	Unmodified	_APDIDVQL_					0	0	0		ENSG00000105373|ENST00000246802|NOP53;ENST00000600410.5_1_19:48257983-48259211:+|nuORF	ENSG00000105373|ENST00000246802|NOP53	ENSG00000105373|ENST00000246802|NOP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.4567242451002	1	870.456724	869.449448	2.0624	0.0017952	-1.0173	-0.00088555	1.0451	0.0009097	870.4558315987642	25.805	0.41029	25.793	25.672	26.083	-0.0116	369	88	1.4001206	0.051781416	1.3986012	284.8486	0	10.5346985						722	18	4	NaN	NaN	NaN	0.078718	1	5515	5515		69.782	11.547	1	136840			748	1531	469	475	557	557					0.00950103252205281
APDISSYVL	9	Unmodified	_APDISSYVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.6621	0.0016031	-1.3772	-0.0013283	0.28494	0.00027482	964.4971331974832	27.808	0.21715	27.808	27.736	27.953	0	237	88	1.4784646	0.051545262	1.4784646	300.32977	0	10.470734						284	10	2	NaN	NaN	NaN	0.062072	1	7433	7433		41.785	5.198	1	39540			749	4256	470	476	558	558					0.008106589407248066
APDISSYVL	9	Unmodified	_APDISSYVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	1.0717	0.0010336	-0.15291	-0.00014748	0.91874	0.00088613	964.497962181042	27.808	0.21722	27.798	27.726	27.943	-0.009552	234	85	1.4802408	0.049759984	1.4787214	300.6906	0	10.108032						290	10	2	NaN	NaN	NaN	0.04947	1	7283	7283		47.136	22.175	1	39064			750	4256	470	476	559	559					0.008106589407248066
APDLYIPTM	9	Oxidation (M)	_APDLYIPTM(Oxidation (M))_		APDLYIPTM(1)		APDLYIPTM(70)	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5019598782	1	1036.50196	1035.49468	1.5942	0.0016524	-1.0686	-0.0011076	0.52559	0.00054477	1036.500694019941	25.105	0.28951	25.093	24.972	25.262	-0.012011	180	112	1.5121819	0.06563914	1.5106624	306.8777	0	13.320618						483	13	4	NaN	NaN	NaN	0.021751	1	9796	9796		69.782	47.947	1	69440			751	4962	471	477	560	560		518			-0.021644142769218888
APDNVLLTL	9	Unmodified	_APDNVLLTL_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.276575035	2	478.276575	954.538597	1.0694	0.00051146	-3.4738	-0.0016614	-2.4044	-0.00115	478.2753921531906	26.866	0.1448	26.856	26.808	26.952	-0.010645	1305	82	0.83389086	0.04986292	0.8323714	338.8267	0	20.260315						251	7	2	NaN	NaN	NaN	0.089764	1	7056	7056		37.302	1.266	1	27380			752	5226	472	478	561	561					0.0595093821170849
APDPTESRSL	10	Unmodified	_APDPTESRSL_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.76710277095	2	536.767103	1071.51965	0.92987	0.00049912	-1.6232	-0.00087128	-0.69333	-0.00037216	536.7660294369801	15.028	0.2163	15.016	14.92	15.136	-0.011737	1296	67	0.8394264	0.040596068	0.83790696	340.54672	0	16.46939						211	10	3	NaN	NaN	NaN	0.34981	1	11328	11328		25.681	5.1681	1	23524			753	4870	473	479	562	562					-0.013246431499965183
APDVVVPTL	9	Unmodified	_APDVVVPTL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.5244098798001	1	910.52441	909.517133	1.4441	0.0013149	-0.86367	-0.00078639	0.58047	0.00052853	910.5235992925718	27.832	0.16897	27.822	27.75	27.919	-0.009552	312	109	1.433996	0.06416774	1.4324765	291.54016	0	13.045685						244	8	2	NaN	NaN	NaN	0.12328	1	6105	6105		32.453	10.618	1	21108			754	5678;276	474	480	563	563					0.05875553183000193
APEAALYG	8	Unmodified	_APEAALYG_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000491885.6_1_6:111982944-111997736:-|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	ENSG00000197122|ENST00000373578|SRC;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	ENST00000471959.2_1_6:111995672-112015899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.3933957068001	1	791.393396	790.386119	1.4679	0.0011617	4.4515	0.0035229	5.9194	0.0046846	791.3972532183523	29.883	0.096512	29.876	29.852	29.948	-0.0070667	477	46	1.3357477	0.0268749	1.3342283	272.17508	0	5.4761047						81	5	2	NaN	NaN	NaN	0.84207	1	4543	4543		3.5732	0.41988	1	7643.9			755	5682;396	475	481	564	564					-0.01745837465045952
APEDLTVVL	9	Unmodified	_APEDLTVVL_					0	0	0		ENST00000502854.5_1_5:176829295-176830776:-|nuORF;ENSG00000131187|ENST00000253496|F12;ENST00000504406.5_1_5:176830401-176830713:-|nuORF	ENST00000502854.5_1_5:176829295-176830776:-|nuORF	ENST00000502854.5_1_5:176829295-176830776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.2548	0.0012002	1.6027	0.0015331	2.8575	0.0027333	956.5311183290322	41.4	0.096359	41.408	41.36	41.456	0.0082588	261	55	1.4642475	0.03200209	1.462728	297.4767	0	6.5015564						107	5	2	NaN	NaN	NaN	0.36492	1	7093	7093		15.175	1.1338	1	6952.9			756	2697	476	482	565	565					0.04307231974826209
APEDQVVLL	9	Unmodified	_APEDQVVLL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.2740323460501	2	492.274032	982.533512	1.5053	0.00074101	-1.3692	-0.000674	0.13612	6.7009E-05	492.2738500857374	27.495	0.14486	27.495	27.446	27.591	0	1281	55	0.84864825	0.033200562	0.84864825	344.68338	0	13.484619						142	7	2	NaN	NaN	NaN	0.10363	1	7971	7971		35.296	0	1	23024			757	3696	477	483	566	566					0.04154634349117714
APEDQVVLL	9	Unmodified	_APEDQVVLL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2740323460501	2	492.274032	982.533512	0.59117	0.00029102	-0.70839	-0.00034872	-0.11723	-5.7708E-05	492.27399950105314	27.518	0.12067	27.508	27.46	27.581	-0.009552	1281	49	0.84864825	0.029505253	0.8471288	344.68338	0	11.983734						115	6	2	NaN	NaN	NaN	0.060816	1	7800	7800		42.318	5.0152	1	16936			758	3696	477	483	567	567					0.04154634349117714
APEEEDHVL	9	Unmodified	_APEEEDHVL_					0	0	0		ENST00000466567.2_1_17:79817024-79818356:-|nuORF;P4HB-CDK5RAP3|1|fusion;ENSG00000185624|ENST00000331483|P4HB	ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENST00000466567.2_1_17:79817024-79818356:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.74055366945	2	519.740554	1037.46655	1.9368	0.0010066	-1.0775	-0.00056004	0.85928	0.0004466	519.7400052532687	16.179	0.14384	16.166	16.142	16.286	-0.012993	1302	43	0.8357362	0.025833845	0.8342168	339.19086	0	10.484924						146	7	2	NaN	NaN	NaN	0.41766	1	9884	9884		13.003	6.0185	1	19356			759	5424	478	484	568	568					-0.050680209326628756
APEEEDHVL	9	Unmodified						0	0	0		ENST00000466567.2_1_17:79817024-79818356:-|nuORF;P4HB-CDK5RAP3|1|fusion;ENSG00000185624|ENST00000331483|P4HB	ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENST00000466567.2_1_17:79817024-79818356:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	519.740554	1037.46655	1.776	0.00092308	-1.1333	-0.00058903	0.64273	0.00033405	519.7401350121871	16.182	0.19205	16.182	16.134	16.326	0	1302	43	0.8357362	0.025833845	0.8357362	339.19086		10.484924	0.007881	-2.547E-05	0.00075972	NaN	13.003	159	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22311			760	5424	478	484							-0.050680209326628756
APEEFISEL	9	Unmodified	_APEEFISEL_					0	0	0		nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-3|UFL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5040683681998	1	1034.50407	1033.49679	1.0458	0.0010819	2.3797	0.0024618	3.4255	0.0035437	1034.505929993979	28.17	0.1207	28.161	28.088	28.209	-0.0089779	159	115	1.5245869	0.06736672	1.5230675	309.40298	0	13.671539						325	6	3	NaN	NaN	NaN	0.16171	1	9710	9710		27.789	5.9538	1	25190			761	433	479	485	569	569					-0.018616622674926475
APEEHPTLL	9	Unmodified	_APEEHPTLL_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.7638318005	2	503.763832	1005.51311	2.2522	0.0011346	-3.4305	-0.0017282	-1.1784	-0.00059362	503.7620526895597	18.916	0.26392	18.916	18.868	19.132	0	1308	121	0.83204526	0.07378715	0.83204526	337.83337	0	29.959625						733	12	4	NaN	NaN	NaN	0.013281	1	8799	8799		82.96	21.689	1	204880			762	3442	480	486	570	570					0.010574636892783928
APEEHPTLL	9	Unmodified	_APEEHPTLL_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ACTC1|p.R97G|1|0.38|ENSG00000159251|chr15:34793410-34793410|G/C|missense_variant	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7638318005	2	503.763832	1005.51311	1.7154	0.00086418	-0.74566	-0.00037564	0.96979	0.00048854	503.763346182423	18.962	0.21622	18.948	18.876	19.092	-0.014059	1308	106	0.83204526	0.06454629	0.8305259	337.83334	0	26.20758						611	10	4	NaN	NaN	NaN	0.04947	1	8632	8632		47.136	15.575	1	179000			763	3442	480	486	571	571					0.010574636892783928
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5411225765	1	1004.54112	1003.53385	1.897	0.0019056	-5.6072	-0.0056327	-3.7103	-0.0037271	1004.5407076492436	20.309	0.26443	20.309	20.237	20.501	0	240	154	1.4766881	0.090590954	1.4766881	299.80014	0	18.391968						744	12	4	NaN	NaN	NaN	0.025843	1	8729	8729		64.55	32.989	1	144170			764	841	481	487	572	572					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.77419952155	2	502.7742	1003.53385	2.5674	0.0012908	-2.2044	-0.0011083	0.36303	0.00018252	502.77308569504964	20.309	0.57739	20.309	20.189	20.766	0	1308	448	0.83204526	0.2764591	0.83204526	337.84235	0	112.25304						2560	25	6	NaN	NaN	NaN	0.0081087	1	8733	8733		96.245	58.943	1	6828700			765	841	481	487	573	573					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.77419952155	2	502.7742	1003.53385	2.7549	0.0013851	-1.8771	-0.00094377	0.87775	0.00044131	502.7733295003813	20.333	0.67421	20.319	20.198	20.873	-0.014141	1308	448	0.83204526	0.2764591	0.8305259	337.84235	0	112.25304						2628	29	6	NaN	NaN	NaN	0.012648	1	8560	8560		84.879	37.839	1	6908800			766	841	481	487	574	574					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5411225765	1	1004.54112	1003.53385	1.726	0.0017339	0.34574	0.00034731	2.0718	0.0020812	1004.5416956993104	20.333	0.14453	20.319	20.271	20.415	-0.014141	243	151	1.4749115	0.08880997	1.473392	299.43942	0	18.030365						316	7	2	NaN	NaN	NaN	0.043119	1	8562	8562		49.833	10.915	1	79561			767	841	481	487	575	575					0.032220540689422705
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.2561739438999	2	477.256174	952.497795	1.4262	0.00068068	-2.3324	-0.0011132	-0.9062	-0.00043249	477.25507528750194	14.933	0.26426	14.933	14.861	15.126	0	1353	55	0.8043377	0.033265352	0.8043377	326.82855	0	13.516785						294	12	3	NaN	NaN	NaN	0.12104	1	7153	7153		32.778	7.0262	1	48520			768	1769	482	488	576	576					0.01964596892071313
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.2561739438999	2	477.256174	952.497795	0.93532	0.00044639	-1.0975	-0.00052378	-0.16215	-7.7389E-05	477.25564935722605	14.932	0.26437	14.92	14.848	15.112	-0.011737	1350	64	0.80618626	0.038815916	0.8046668	327.57968	0	15.772156						265	12	3	NaN	NaN	NaN	0.024359	1	7011	7011		66.481	20.655	1	48453			769	1769	482	488	577	577					0.01964596892071313
APELESKESVL	11	Unmodified	_APELESKESVL_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3191681312001	2	601.319168	1200.62378	1.4309	0.00086043	0.48655	0.00029257	1.9175	0.001153	601.3193951917879	19.396	0.21596	19.396	19.3	19.516	0	1188	55	0.90571284	0.03307879	0.90571284	366.93652	0	13.401398						237	10	3	NaN	NaN	NaN	0.22256	1	16502	16502		36.622	13.504	1	33260			770	2046	483	489	578	578					0.03149638886861794
APELESKESVL	11	Unmodified	_APELESKESVL_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3191681312001	2	601.319168	1200.62378	1.1033	0.00066341	-1.2264	-0.00073747	-0.12316	-7.4057E-05	601.318852780552	19.418	0.096121	19.404	19.356	19.452	-0.014141	1191	49	0.90387505	0.029406548	0.9023556	366.192	0	11.913666						171	5	3	NaN	NaN	NaN	0.03273	1	15853	15853		67.665	41.864	1	24988			771	2046	483	489	579	579					0.03149638886861794
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(110)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.26789272315	2	557.267893	1112.52123	1.8699	0.001042	-1.6151	-0.00090006	0.25479	0.00014199	557.2671243246481	23.754	0.1205	23.754	23.658	23.778	0	1248	76	0.8689189	0.046029747	0.8689189	352.3466	0	18.66504						357	6	5	NaN	NaN	NaN	0.0035249	1	13365	13365		106.42	61.26	1	215480			772	1184	484	490	580	580		129			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(56)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.26789272315	2	557.267893	1112.52123	1.8148	0.0010113	-1.4559	-0.00081132	0.35891	0.00020001	557.267297090318	23.851	0.2411	23.851	23.827	24.068	0	1254	82	0.8652351	0.049728274	0.8652351	350.8528	0	20.164825						480	11	5	NaN	NaN	NaN	0.032409	1	13366	13366		55.958	24.397	1	243260			773	1184	484	490	581	581		129			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(75)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.26789272315	2	557.267893	1112.52123	1.9942	0.0011113	-1.7067	-0.00095107	0.28755	0.00016024	557.2671474090474	23.778	0.14455	23.765	23.645	23.789	-0.013048	1248	82	0.8689189	0.049717486	0.86739945	352.3466	0	20.16043						385	7	5	NaN	NaN	NaN	0.017558	1	12986	12986		75.089	36.958	1	220310			774	1184	484	490	582	582		129			-0.03052725385600752
APFKFDMEL	9	Unmodified	_APFKFDMEL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2704354121	2	549.270435	1096.52632	1.6053	0.00088173	-1.3402	-0.00073615	0.26504	0.00014558	549.2697621672818	27.783	0.24134	27.774	27.726	27.967	-0.009552	1251	91	0.8670771	0.055238724	0.8655577	351.66248	0	22.40329						572	11	5	NaN	NaN	NaN	0.064504	1	12352	12352		40.957	6.5181	1	419010			775	1184	484	491	583	583					-0.01808421522991921
APFTEGISF	9	Unmodified	_APFTEGISF_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4723743093	1	968.472374	967.465098	1.8685	0.0018096	-0.41512	-0.00040203	1.4534	0.0014076	968.471309346547	28.508	0.048271	28.508	28.484	28.532	0	318	34	1.4304334	0.019597411	1.4304334	290.55606	0	3.980713						64	3	3	NaN	NaN	NaN	0.12945	1	7537	7537		31.561	7.7106	1	4971			776	2565	485	492	584	584					-0.019936102307724468
APFTEGISF	9	Unmodified	_APFTEGISF_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.4723743093	1	968.472374	967.465098	1.3106	0.0012693	-2.7169	-0.0026312	-1.4063	-0.001362	968.4695002735291	28.532	0.096508	28.523	28.475	28.572	-0.0083485	315	43	1.4322147	0.024940848	1.4306953	290.9179	0	5.0660706						67	5	2	NaN	NaN	NaN	0.36492	1	7390	7390		15.175	0	1	5766.7			777	2565	485	492	585	585					-0.019936102307724468
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8160643362501	2	590.816064	1179.61758	1.4237	0.00084112	-3.5023	-0.0020692	-2.0786	-0.0012281	590.8139715749376	34.662	0.16883	34.662	34.638	34.806	0	1182	43	0.9093879	0.025722384	0.9093879	368.49997	0	10.423187						202	8	4	NaN	NaN	NaN	0.14658	1	15820	15820		35.296	16.133	1	26990			778	2565	486	493	586	586					0.034951654459973724
APFTEGISFVL	11	Unmodified	_APFTEGISFVL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8160643362501	2	590.816064	1179.61758	0.9301	0.00054952	-2.1446	-0.0012671	-1.2145	-0.00071754	590.8147846198168	34.66	0.1446	34.66	34.636	34.78	-0.00064468	1179	46	0.9112251	0.027558208	0.90970564	369.24445	0	11.167084						211	7	4	NaN	NaN	NaN	0.48069	1	15238	15238		19.164	6.1607	1	28972			779	2565	486	493	587	587					0.034951654459973724
APGERMYLF	9	Unmodified	_APGERMYLF_					0	0	0		ENST00000373044.2_1_1:38269292-38269487:-|nuORF	ENST00000373044.2_1_1:38269292-38269487:-|nuORF	ENST00000373044.2_1_1:38269292-38269487:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.26822707415	2	542.268227	1082.5219	1.1364	0.00061622	-5.2175	-0.0028293	-4.0811	-0.0022131	542.2637052471773	34.347	0.19275	34.346	34.249	34.442	-0.0012474	1284	85	0.8468043	0.051600754	0.8452849	343.49554	0	20.931183						200	9	3	NaN	NaN	NaN	0.27608	1	11772	11772		20.449	1.3303	1	22761			780	6668	487	494	588	588					-0.01605885945900809
APGHTANG	8	Unmodified	_APGHTANG_					0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3372778114001	1	724.337278	723.330001	1.4537	0.001053	2.2362	0.0016198	3.6899	0.0026727	724.3396040114814	54.38	0.11993	54.38	54.356	54.476	0	612	52	1.2549332	0.030604959	1.2549332	256.1125	0	6.245987						143	6	2	NaN	NaN	NaN	0.84207	1	3659	3659		3.5732	1.9029	1	23020	+		781	12892	488	495	589	589					-0.0427304558185142
APGHTANG	8	Unmodified						0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.337278	723.330001	1.4537	0.001053	2.2362	0.0016198	3.6899	0.0026727	724.3396040114814	54.38	0.11993	54.38	54.356	54.476	0	612	52	1.2549332	0.030604959	1.2549332	256.1125		6.245987	0.0013491	-0.00034724	-0.00014033	NaN	3.5732	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23020	+		782	12892	488	495							-0.0427304558185142
APGHTANG	8	Unmodified						0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	724.337278	723.330001	-0.48912	-0.00035429	3.1319	0.0022686	2.6428	0.0019143	724.339038454613	54.378	0.14391	54.377	54.353	54.497	-0.00061798	609	61	1.2567334	0.036007762	1.255214	256.47986		7.348633	-0.0013491	0.00030157	0.00014033	NaN	3.5732	151	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22135	+		783	12892	488	495							-0.0427304558185142
APGPADPLL	9	Unmodified	_APGPADPLL_					0	0	0		ENST00000525701.5_1_11:494693-500690:-|nuORF;ENST00000531223.1_1_11:499827-500624:-|nuORF	ENST00000525701.5_1_11:494693-500690:-|nuORF	ENST00000525701.5_1_11:494693-500690:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.4668950009001	1	850.466895	849.459619	1.8401	0.001565	-1.132	-0.00096272	0.70814	0.00060225	850.4656715176873	25.033	0.1689	25.033	24.985	25.153	0	444	100	1.3554435	0.05908096	1.3554435	275.86023	0	12.024139						308	8	3	NaN	NaN	NaN	0.020004	1	5377	5377		71.993	35.406	1	41996			784	7425	489	496	590	590					0.028867109774296296
APGPADPLL	9	Unmodified	_APGPADPLL_					0	0	0		ENST00000525701.5_1_11:494693-500690:-|nuORF;ENST00000531223.1_1_11:499827-500624:-|nuORF	ENST00000525701.5_1_11:494693-500690:-|nuORF	ENST00000525701.5_1_11:494693-500690:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.4668950009001	1	850.466895	849.459619	1.2723	0.0010821	-1.3159	-0.0011192	-0.04359	-3.7072E-05	850.4653809472269	25.033	0.16887	25.021	24.972	25.141	-0.012011	441	97	1.3572328	0.057281375	1.3557134	276.2244	0	11.657928						278	8	3	NaN	NaN	NaN	0.094712	1	5244	5244		36.586	13.252	1	37027			785	7425	489	496	591	591					0.028867109774296296
APGPPGSGG	9	Unmodified	_APGPPGSGG_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|8|1|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|8|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3311298010001	1	696.33113	695.323853	1.7079	0.0011893	0.6225	0.00043346	2.3304	0.0016227	696.3318216564156	18.122	0.12003	18.108	18.084	18.204	-0.013948	735	64	1.1809633	0.037968278	1.1794438	241.19675	0	7.754547						122	6	2	NaN	NaN	NaN	0.55027	1	3080	3080		7.5404	0	1	12811	+		786	13061	490	497	592	592					-0.03599563813372697
APGPPGSGG	9	Unmodified						0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|8|1|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|8|1|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	696.33113	695.323853	1.7079	0.0011893	0.6225	0.00043346	2.3304	0.0016227	696.3318216564156	18.122	0.12003	18.108	18.084	18.204	-0.013948	735	64	1.1809633	0.037968278	1.1794438	241.19675		7.754547	-0.0084735	0.0010395	0.0010486	NaN	7.5404	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12811	+		787	13061	490	497							-0.03599563813372697
APGQLGGYG	9	Unmodified	_APGQLGGYG_					0	0	0			REV__ENSG00000069011|ENST00000265340|PITX1	REV__ENSG00000069011|ENST00000265340|PITX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.3995437172001	1	819.399544	818.392267	1.2385	0.0010148	-10.505	-0.0086077	-9.2664	-0.0075929	819.3912196878725	39.694	0.072296	39.694	39.694	39.767	0	501	58	1.3214091	0.034074306	1.3214091	269.0961	0	6.9389954						70	4	2	NaN	NaN	NaN	0.53206	1	4998	4998		8.2903	2.2	1	4391.6	+		788	8560	491	498	593	593					-0.024193192335133062
APGSPQYL	8	Unmodified	_APGSPQYL_					0	0	0			REV__ENSG00000185359|ENST00000329138|HGS	REV__ENSG00000185359|ENST00000329138|HGS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4199448083001	1	832.419945	831.412668	1.6009	0.0013326	7.6506	0.0063685	9.2515	0.0077011	832.4246102531574	29.087	0.2172	29.087	29.015	29.232	0	441	52	1.3572328	0.030416131	1.3572328	276.31982	0	6.1924133						153	10	2	NaN	NaN	NaN	0.78264	1	5152	5152		11.548	0	1	15023	+		789	10961	492	499	594	594					-0.009781485737107687
APGSPQYL	8	Unmodified						0	0	0			REV__ENSG00000185359|ENST00000329138|HGS	REV__ENSG00000185359|ENST00000329138|HGS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.419945	831.412668	1.6009	0.0013326	7.6506	0.0063685	9.2515	0.0077011	832.4246102531574	29.087	0.2172	29.087	29.015	29.232	0	441	52	1.3572328	0.030416131	1.3572328	276.31982		6.1924133	0.016332	9.6161E-05	0.00075972	NaN	11.548	153	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15023	+		790	10961	492	499							-0.009781485737107687
APGSPQYL	8	Unmodified						0	0	0			REV__ENSG00000185359|ENST00000329138|HGS	REV__ENSG00000185359|ENST00000329138|HGS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.419945	831.412668	1.0343	0.00086098	7.3305	0.0061021	8.3648	0.0069631	832.4244181385676	29.062	0.14478	29.055	29.007	29.151	-0.0077209	441	49	1.3572328	0.02862537	1.3557134	276.31982		5.8278503	-0.016332	-0.00017031	-0.00075972	NaN	11.548	148	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15363	+		791	10961	492	499							-0.009781485737107687
APHEDTLSL	9	Unmodified	_APHEDTLSL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.74563904735004	2	491.745639	981.476725	2.2606	0.0011116	-0.78911	-0.00038804	1.4715	0.00072359	491.7450620142081	18.772	0.19195	18.772	18.7	18.892	0	1317	91	0.8265074	0.05538225	0.8265074	335.6957	0	22.49414						388	9	3	NaN	NaN	NaN	0.094712	1	7933	7933		36.586	7.9199	1	54091			792	3257	493	500	595	595					-0.014754132074131121
APHEDTLSL	9	Unmodified	_APHEDTLSL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.74563904735004	2	491.745639	981.476725	1.2588	0.00061901	0.23146	0.00011382	1.4903	0.00073283	491.7453231987298	18.794	0.1441	18.78	18.731	18.876	-0.014061	1317	91	0.8265074	0.05537623	0.82498795	335.6957	0	22.49173						418	7	3	NaN	NaN	NaN	0.20577	1	7758	7758		24.961	0	1	56176			793	3257	493	500	596	596					-0.014754132074131121
APIAPLTA	8	Unmodified	_APIAPLTA_					0	0	0			REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4505166551999	1	753.450517	752.44324	1.4356	0.0010817	-5.8529	-0.0044099	-4.4173	-0.0033282	753.4453956846465	27.735	0.16898	27.726	27.702	27.87	-0.009552	612	40	1.2549332	0.023403764	1.2534138	255.9282	0	4.7729187						111	8	2	NaN	NaN	NaN	0.84887	1	4034	4034		0.32989	0	1	8169.3	+		794	13361	494	501	597	597					0.05711629811310104
APIAPLTA	8	Unmodified						0	0	0			REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	753.450517	752.44324	1.5498	0.0011677	-3.891	-0.0029316	-2.3412	-0.001764	753.4475899796397	27.736	0.12067	27.736	27.688	27.808	0	615	40	1.2531329	0.023403764	1.2531329	255.56105		4.7729034	0.0051879	0.00049142	-0.00014043	NaN	0.32989	93	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6821.5	+		795	13361	494	501							0.05711629811310104
APIAPLTA	8	Unmodified						0	0	0			REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	REV__SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|51|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.450517	752.44324	1.4356	0.0010817	-5.8529	-0.0044099	-4.4173	-0.0033282	753.4453956846465	27.735	0.16898	27.726	27.702	27.87	-0.009552	612	40	1.2549332	0.023403764	1.2534138	255.9282		4.7729187	-0.0051879	-0.0009868	0.00014043	NaN	0.32989	111	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8169.3	+		796	13361	494	501							0.05711629811310104
APIQSEPRV	9	Unmodified	_APIQSEPRV_					0	0	0		BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77727352675004	2	498.777274	995.539994	1.6579	0.00082694	-4.6007	-0.0022947	-2.9428	-0.0014678	498.7751444492195	15.366	0.16823	15.366	15.342	15.51	0	1323	61	0.8228144	0.036949456	0.8228144	334.13055	0	15.004547						226	8	3	NaN	NaN	NaN	0.12866	1	8420	8420		31.675	5.5605	1	25526			797	60	495	502	598	598					0.04204572300477594
APIQSEPRV	9	Unmodified	_APIQSEPRV_					0	0	0		BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77727352675004	2	498.777274	995.539994	1.6412	0.00081859	-2.1004	-0.0010476	-0.45923	-0.00022905	498.77618080836504	15.366	0.12018	15.366	15.342	15.462	0	1272	37	0.854179	0.022121787	0.854179	346.86716	0	8.983276						84	6	2	NaN	NaN	NaN	0.49999	1	8423	8423		9.6116	1.3668	1	7464.5			798	60	495	502	599	599					0.04204572300477594
APIQSEPRV	9	Unmodified	_APIQSEPRV_					0	0	0		BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.77727352675004	2	498.777274	995.539994	1.2643	0.00063062	-2.6951	-0.0013443	-1.4308	-0.00071363	498.77642309937215	15.364	0.16789	15.352	15.28	15.448	-0.012201	1323	73	0.8228144	0.044329762	0.82129496	334.13055	0	18.001556						236	8	3	NaN	NaN	NaN	0.12866	1	8252	8252		31.675	5.5605	1	28350			799	60	495	502	600	600					0.04204572300477594
APIRPDIVNF	10	Unmodified	_APIRPDIVNF_					0	0	0		ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3218482059	2	571.321848	1140.62914	1.5866	0.00090646	4.4473	0.0025409	6.0339	0.0034473	571.3240975208026	24.333	0.096527	24.333	24.309	24.406	0	1191	103	0.90387505	0.062515974	0.90387505	366.41074	0	25.34256						337	5	5	NaN	NaN	NaN	0.075094	1	14482	14482		49.394	26.276	1	135060			800	4947;7599	496	503	601	601					0.0644540725998013
APIRPDIVNF	10	Unmodified	_APIRPDIVNF_					0	0	0		ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.3218482059	2	571.321848	1140.62914	1.304	0.00074502	0.42707	0.00024399	1.7311	0.00098901	571.322110854197	24.357	0.1207	24.344	24.296	24.417	-0.012747	1197	91	0.9001988	0.0551731	0.8986794	364.92047	0	22.365936						353	6	4	NaN	NaN	NaN	0.23201	1	14012	14012		32.778	11.007	1	130970			801	4947;7599	496	503	602	602					0.0644540725998013
APIWQFEDL	9	Unmodified	_APIWQFEDL_					0	0	0		ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	ENSG00000137509|ENST00000313010|PRCP	ENSG00000137509|ENST00000313010|PRCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5516872628	1	1118.55169	1117.54441	1.6545	0.0018507	-1.334	-0.0014921	0.32059	0.00035859	1118.5475100381918	32.297	0.096561	32.297	32.273	32.37	0	75	55	1.5741152	0.031802535	1.5741152	319.1378	0	6.447693						96	5	2	NaN	NaN	NaN	0.14787	1	13579	13579		28.896	9.5592	1	7324.2			802	3091	497	504	603	603					-0.009659632766215509
APIYADLSL	9	Unmodified	_APIYADLSL_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5193245019001	1	962.519325	961.512048	1.5085	0.001452	-1.2616	-0.0012143	0.2469	0.00023765	962.5200500690461	29.208	0.16896	29.208	29.16	29.329	0	225	112	1.4855686	0.06572282	1.4855686	301.78162	0	13.351074						502	8	5	NaN	NaN	NaN	0.056143	1	7372	7372		44.302	5.3845	1	85343			803	13719	498	505	604	604					0.029752493203773156
APIYADLSL	9	Unmodified						0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.519325	961.512048	1.2842	0.001236	-2.1901	-0.002108	-0.90594	-0.00087199	962.5188012428201	29.231	0.19308	29.224	29.151	29.344	-0.0077209	222	115	1.4873441	0.06748116	1.4858247	302.1423		13.708282	0.0078234	-0.0004152	0.00012805	NaN	44.302	503	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85850			804	13719	498	505							0.029752493203773156
APKAGPPG	8	Unmodified	_APKAGPPG_					0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3882507494	1	694.388251	693.380974	1.2203	0.00084736	-9.2267	-0.0064069	-8.0064	-0.0055595	694.3822527969664	36.157	0.048264	36.157	36.157	36.205	0	738	49	1.179155	0.02892983	1.179155	240.84052	0	5.9088593						73	3	2	NaN	NaN	NaN	0.84887	1	3115	3115		0.32989	0	1	7619.4			805	7639	499	506	605	605					0.02201903462980681
APKAGPPG	8	Unmodified	_APKAGPPG_					0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3882507494	1	694.388251	693.380974	1.2666	0.00087954	-8.7517	-0.0060771	-7.485	-0.0051975	694.3826478866732	36.784	0.14436	36.784	36.736	36.88	0	756	73	1.1683017	0.04341328	1.1683017	238.62373	0	8.867081						193	7	2	NaN	NaN	NaN	0.84887	1	3116	3116		0.32989	0	1	20219			806	7639	499	506	606	606					0.02201903462980681
APKAGPPG	8	Unmodified						0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.388251	693.380974	1.6078	0.0011165	-13.85	-0.0096176	-12.243	-0.0085011	694.3799070455697	36.396	0.048214	36.398	36.398	36.446	0.0016785	738	67	1.179155	0.03979969	1.1776356	240.84053		8.129044	0.12046	-0.0016802	-0.00075972	NaN	0.32989	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5491.2			807	7639	499	506							0.02201903462980681
APKAGPPG	8	Unmodified						0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.388251	693.380974	1.4737	0.0010233	-11.29	-0.0078394	-9.816	-0.0068161	694.3802381717891	36.613	0.048164	36.615	36.567	36.615	0.0016785	738	49	1.179155	0.02893281	1.1776356	240.84052		5.9095	-0.084416	-0.0013717	0.0046669	NaN	0.32989	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5627.3			808	7639	499	506							0.02201903462980681
APKGPGGK	8	Unmodified	_APKGPGGK_					0	0	0			REV__nc|ENSG00000129993|O75081-5|CBFA2T3	REV__nc|ENSG00000129993|O75081-5|CBFA2T3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4147998509001	1	711.4148	710.407523	-0.56931	-0.00040501	2.81	0.0019991	2.2407	0.001594	711.4165693387927	55.819	0.048012	55.818	55.794	55.842	-0.00059128	651	64	1.2315145	0.03785062	1.229995	251.41805	0	7.7273407						84	3	2	NaN	NaN	NaN	0.84887	1	3381	3381		0.32989	0	1	10451	+		809	13118	500	507	607	607					0.040735923543252284
APKGPGGK	8	Unmodified						0	0	0			REV__nc|ENSG00000129993|O75081-5|CBFA2T3	REV__nc|ENSG00000129993|O75081-5|CBFA2T3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.4148	710.407523	1.3379	0.00095179	0.7449	0.00052993	2.0828	0.0014817	711.4147827255786	56.037	0.11991	56.037	55.965	56.085	0	654	88	1.2297117	0.052264333	1.2297117	251.05		10.669937	0.10936	-0.00080772	-0.00014168	NaN	0.32989	164	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25995	+		810	13118	500	507							0.040735923543252284
APKGPGGK	8	Unmodified						0	0	0			REV__nc|ENSG00000129993|O75081-5|CBFA2T3	REV__nc|ENSG00000129993|O75081-5|CBFA2T3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.4148	710.407523	-0.56931	-0.00040501	2.81	0.0019991	2.2407	0.001594	711.4165693387927	55.819	0.048012	55.818	55.794	55.842	-0.00059128	651	64	1.2315145	0.03785062	1.229995	251.41805		7.7273407	-0.10936	0.0006614	0.00014168	NaN	0.32989	84	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10451	+		811	13118	500	507							0.040735923543252284
APLEDEATL	9	Unmodified	_APLEDEATL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4727682398001	1	958.472768	957.465492	2.3381	0.002241	0.40128	0.00038462	2.7394	0.0026256	958.4732632982125	22.115	0.38591	22.115	21.994	22.38	0	309	223	1.435777	0.13202703	1.435777	291.68423	0	26.821869						1752	17	6	NaN	NaN	NaN	0.0023856	1	7269	7269		109.86	39.258	1	1535300			812	3696	501	508	608	608					-0.014942353015612753
APLEDEATL	9	Unmodified	_APLEDEATL_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4727682398001	1	958.472768	957.465492	2.3349	0.0022379	0.072036	6.9045E-05	2.4069	0.002307	958.4729075781638	22.115	0.31336	22.101	21.981	22.294	-0.013731	309	232	1.435777	0.13740146	1.4342575	291.68423	0	27.913696						1645	14	5	NaN	NaN	NaN	0.00020136	1	7132	7132		116.74	36.097	1	1432200			813	3696	501	508	609	609					-0.014942353015612753
APLGGAHA	8	Unmodified	_APLGGAHA_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3678496583	1	693.36785	692.360573	1.5711	0.0010893	-6.6217	-0.0045913	-5.0506	-0.003502	693.3636436774915	25.129	0.16887	25.117	25.069	25.238	-0.012011	651	40	1.2315145	0.023436308	1.229995	251.542	0	4.786972						116	8	2	NaN	NaN	NaN	0.84651	1	3020	3020		1.6704	0	1	8072.3			814	4507	502	509	610	610					0.0020873280317346143
APLPLLIGG	9	Unmodified	_APLPLLIGG_					0	0	0			REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.77347124005	2	425.773471	849.53239	1.4243	0.00060642	1.3458	0.00057301	2.7701	0.0011794	425.7739088332811	17.57	0.21582	17.556	17.484	17.7	-0.013567	1362	55	0.79879075	0.033297777	0.7972713	325.13364	0	13.553284						277	10	3	NaN	NaN	NaN	0.65388	1	5249	5249		3.1533	0	1	45570	+		815	11686	503	510	611	611					0.10160464770854105
APLPLLIGG	9	Unmodified						0	0	0			REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	425.773471	849.53239	1.7473	0.00074397	2.6999	0.0011495	4.4472	0.0018935	425.77451676375506	17.429	0.16789	17.429	17.381	17.549	0	1365	52	0.7969414	0.03144282	0.7969414	324.3809		12.798218	-0.063572	0.00068546	-0.00016497	NaN	3.1533	208	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39812	+		816	11686	503	510							0.10160464770854105
APLPLLIGG	9	Unmodified						0	0	0			REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	REV__ENST00000310677.8_1_14:24791428-24793534:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	425.773471	849.53239	1.4243	0.00060642	1.3458	0.00057301	2.7701	0.0011794	425.7739088332811	17.57	0.21582	17.556	17.484	17.7	-0.013567	1362	55	0.79879075	0.033297777	0.7972713	325.13364		13.553284	0.063572	-0.00046757	0.00016497	NaN	3.1533	277	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45570	+		817	11686	503	510							0.10160464770854105
APLSVEVEF	9	Unmodified	_APLSVEVEF_					0	0	0		ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;nc|ENSG00000167118|Q9BTM9-3|URM1	ENSG00000167118|ENST00000372853|URM1	ENSG00000167118|ENST00000372853|URM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5142391240001	1	990.514239	989.506963	2.0423	0.0020229	-2.4342	-0.0024111	-0.39192	-0.0003882	990.5110018224273	28.822	0.14482	28.822	28.725	28.87	0	252	94	1.4695803	0.055094242	1.4695803	298.4144	0	11.1875						347	7	4	NaN	NaN	NaN	0.036546	1	8190	8190		52.624	27.663	1	47099			818	4528	504	511	612	612					0.011789454577751712
APLYNKWV	8	Unmodified	_APLYNKWV_					0	0	0			REV__nc|ENSG00000079332|Q9NR31-2|SAR1A	REV__nc|ENSG00000079332|Q9NR31-2|SAR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.7740025563	2	495.774003	989.533452	1.7398	0.00086255	3.3413	0.0016565	5.0811	0.0025191	495.77504697680655	15.846	0.1199	15.846	15.798	15.918	0	1563	34	0.67443806	0.02049154	0.67443806	273.90015	0	8.32196						83	6	2	NaN	NaN	NaN	0.8439	1	8200	8200		3.1533	0	1	6455.4	+		819	8641	505	512	613	613					0.03826679139751832
APMGNDTIL	9	Unmodified	_APMGNDTIL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4553440366002	1	931.455344	930.448068	2.034	0.0018946	2.2687	0.0021132	4.3027	0.0040078	931.4557618439583	23.61	0.19271	23.61	23.538	23.73	0	327	82	1.425088	0.0481385	1.425088	289.63193	0	9.783569						230	9	2	NaN	NaN	NaN	0.026295	1	6618	6618		63.958	32.397	1	28054			820	1604	506	513	614	614					-0.019938541082069605
APMGNDTIL	9	Unmodified	_APMGNDTIL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4553440366002	1	931.455344	930.448068	1.701	0.0015844	2.5539	0.0023788	4.2549	0.0039632	931.4570223275884	23.609	0.21692	23.596	23.524	23.741	-0.013048	324	88	1.42687	0.05169332	1.4253505	289.9941	0	10.5060425						262	10	2	NaN	NaN	NaN	0.13602	1	6479	6479		30.61	3.8786	1	33492			821	1604	506	513	615	615					-0.019938541082069605
APNEEAFF	8	Unmodified	_APNEEAFF_					0	0	0		nc|ENSG00000154743|Q8NCE0-5|TSEN2;nc|ENSG00000154743|Q8NCE0-3|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	nc|ENSG00000154743|Q8NCE0-5|TSEN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4097740525001	1	924.409774	923.402498	0.62809	0.00058061	4.7813	0.0044199	5.4094	0.0050005	924.4136845933606	32.489	0.14478	32.486	32.462	32.607	-0.0031013	306	61	1.4375578	0.035618424	1.4360384	292.19876	0	7.239807						178	7	2	NaN	NaN	NaN	0.55996	1	6341	6341		27.789	5.9538	1	16704			822	7966	507	514	616	616					-0.06226756298940472
APNFEGPHHI	10	Unmodified	_APNFEGPHHI_					0	0	0			REV__ENST00000431180.5_1_3:47058436-47058586:-|nuORF	REV__ENST00000431180.5_1_3:47058436-47058586:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.5174404887667	3	373.51744	1117.53049	1.8381	0.00068657	-8.9638	-0.0033481	-7.1257	-0.0026616	373.5142230880086	15.726	0.40809	15.726	15.486	15.894	0	1470	82	0.7320868	0.050150216	0.7320868	445.26248	0	30.501862						463	18	2	NaN	NaN	NaN	0.507	1	13574	13574		11.561	2.5993	1	108630	+		823	12156	508	515	617	617					-0.023571959850414714
APPAASVI	8	Unmodified	_APPAASVI_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.4192165268001	1	725.419217	724.41194	1.3093	0.00094976	6.2485	0.0045328	7.5577	0.0054825	725.4237285553976	36.181	0.26521	36.181	36.133	36.398	0	570	109	1.2801172	0.06476545	1.2801172	261.24484	0	13.217285						382	12	3	NaN	NaN	NaN	0.79379	1	3681	3681		10.052	3.9612	1	84671			824	3574	509	516	618	618					0.03871056777245485
APPAASVI	8	Unmodified	_APPAASVI_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.4192165268001	1	725.419217	724.41194	1.5067	0.001093	5.3374	0.0038719	6.8441	0.0049648	725.4227935075339	36.18	0.24092	36.181	36.132	36.373	0.0011024	567	97	1.2819146	0.057550907	1.2803952	261.61166	0	11.744934						362	11	3	NaN	NaN	NaN	0.79379	1	3596	3596		10.052	3.9612	1	82535			825	3574	509	516	619	619					0.03871056777245485
APPAGTGP	8	Unmodified	_APPAGTGP_					0	0	0			REV__ENST00000487162.1_1_22:50967616-50968379:-|nuORF	REV__ENST00000487162.1_1_22:50967616-50968379:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3409662058001	1	667.340966	666.33369	1.2635	0.0008432	6.2952	0.0042011	7.5588	0.0050443	667.3451677903373	27.494	0.2413	27.484	27.46	27.702	-0.009552	702	76	1.2008407	0.045166373	1.1993213	245.46237	0	9.232422						188	11	2	NaN	NaN	NaN	0.81807	1	2401	2401		6.794	0	1	20254	+		826	8435	510	517	620	620					-0.012823758080003245
APPCGGSG	8	Unmodified	_APPCGGSG_					0	0	0			REV__ENSG00000176399|ENST00000325870|DMRTA1	REV__ENSG00000176399|ENST00000325870|DMRTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.2660867032	1	645.266087	644.25881	2.0939	0.0013511	-4.0314	-0.0026013	-1.9375	-0.0012502	645.2625374331316	19.756	0.14411	19.756	19.732	19.876	0	807	40	1.1375128	0.023564696	1.1375128	232.67781	0	4.8201447						103	7	2	NaN	NaN	NaN	0.84692	1	1872	1872		1.4396	0	1	9091.9	+		827	10748	511	518	621	621					-0.07754881610878783
APPFGFLV	8	Unmodified	_APPFGFLV_					0	0	0			REV__ENST00000320743.7_2_12:59314033-59314237:-|nuORF	REV__ENST00000320743.7_2_12:59314033-59314237:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.23926428195	2	424.239264	846.463976	3.277	0.0013902	-10.375	-0.0044015	-7.098	-0.0030112	424.23610762796267	25.515	0.024143	25.503	25.503	25.528	-0.0116	1311	25	0.83019954	0.014766991	0.8286801	337.93756	0	6.0109863						26	2	2	NaN	NaN	NaN	0.84876	1	5211	5211		0.39566	0	1	1437.7	+		828	11720	512	519	622	622					0.03460220190993368
APPGAEAL	8	Unmodified	_APPGAEAL_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3828310205	1	725.382831	724.375555	0.94182	0.00068318	5.5611	0.0040339	6.5029	0.0047171	725.3864251815978	34.903	0.26521	34.903	34.831	35.096	0	606	82	1.2585332	0.048607945	1.2585332	256.84027	0	9.919846						303	12	3	NaN	NaN	NaN	0.76633	1	3677	3677		13.737	4.6139	1	47785	+		829	9656	513	520	623	623					0.0023417988052187866
APPGAEAL	8	Unmodified						0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	725.382831	724.375555	0.94182	0.00068318	5.5611	0.0040339	6.5029	0.0047171	725.3864251815978	34.903	0.26521	34.903	34.831	35.096	0	606	82	1.2585332	0.048607945	1.2585332	256.84027		9.919846	0.00078758	0.00020124	0.00075972	NaN	13.737	303	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47785	+		830	9656	513	520							0.0023417988052187866
APPGAEAL	8	Unmodified						0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.382831	724.375555	1.2136	0.00088034	5.0805	0.0036853	6.2942	0.0045657	725.3862376370489	34.901	0.19296	34.901	34.853	35.046	-4.5776E-05	606	73	1.2585332	0.043204665	1.2570138	256.84027		8.817169	-0.00078758	-0.00014735	-0.00075972	NaN	13.737	307	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49147	+		831	9656	513	520							0.0023417988052187866
APPGAITV	8	Unmodified	_APPGAITV_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.4192165268	1	725.419217	724.41194	0.89998	0.00065287	7.273	0.0052759	8.1729	0.0059288	725.4240956991658	34.033	0.12073	34.032	33.984	34.105	-0.0012474	540	79	1.2980826	0.046705246	1.2965631	264.91122	0	9.531555						208	6	3	NaN	NaN	NaN	0.76633	1	3597	3597		13.737	0	1	28008	+		832	11026	514	521	624	624					0.038710567772341165
APPGDGGG	8	Unmodified	_APPGDGGG_					0	0	0		ENST00000313871.8_1_X:1710486-1710570:+|nuORF	ENST00000313871.8_1_X:1710486-1710570:+|nuORF	ENST00000313871.8_1_X:1710486-1710570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2732805711001	1	627.273281	626.266004	0.618	0.00038765	2.0768	0.0013027	2.6948	0.0016904	627.2755659946063	33.913	0.16893	33.911	33.887	34.056	-0.0012474	1155	40	0.92591566	0.023860574	0.9243962	189.50867	0	4.8835907						126	8	2	NaN	NaN	NaN	0.84887	1	1197	1197		0.32989	0	1	16387			833	6457	515	522	625	625					-0.06207825738795236
APQISDAEL	9	Unmodified	_APQISDAEL_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4731025907998	1	943.473103	942.465826	1.8823	0.0017759	3.7007	0.0034915	5.583	0.0052674	943.4761044320221	21.778	0.096231	21.764	21.74	21.836	-0.013895	327	49	1.425088	0.028518915	1.4235686	289.57806	0	5.795044						90	5	2	NaN	NaN	NaN	0.059222	1	6735	6735		42.995	18.433	1	6345.1			834	1140	516	523	626	626					-0.007708155817340412
APQPTEERL	9	Unmodified	_APQPTEERL_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.77218814885	2	520.772188	1039.52982	1.6635	0.00086632	-2.1249	-0.0011066	-0.4614	-0.00024028	520.7713182072235	14.861	0.24024	14.861	14.813	15.053	0	1275	79	0.85233563	0.047956467	0.85233563	345.91888	0	19.463013						493	11	3	NaN	NaN	NaN	0.054111	1	10198	10198		45.165	20.765	1	135020			835	973	517	524	627	627					0.011639645752211436
APQPTEERL	9	Unmodified	_APQPTEERL_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.77218814885	2	520.772188	1039.52982	1.3449	0.00070041	-1.3702	-0.00071354	-0.025222	-1.3135E-05	520.7714745361449	14.86	0.33644	14.848	14.8	15.136	-0.011738	1272	85	0.854179	0.0516454	0.8526596	346.66702	0	20.960205						434	15	2	NaN	NaN	NaN	0.030545	1	9982	9982		58.398	10.396	1	143530			836	973	517	524	628	628					0.011639645752211436
APQVADAIL	9	Unmodified	_APQVADAIL_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H591Y|1|0.22|ENSG00000070371|chr22:19229849-19229849|G/A|missense_variant;ENST00000466513.1_1_17:57742174-57744343:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.5040087886999	1	897.504009	896.496732	1.9563	0.0017557	-1.1711	-0.0010511	0.78513	0.00070466	897.5031147441039	25.298	0.12062	25.298	25.274	25.395	0	357	76	1.407258	0.044587016	1.407258	286.1661	0	9.066742						213	6	3	NaN	NaN	NaN	0.026295	1	6010	6010		63.958	16.918	1	30701			837	170;3312	518	525	629	629					0.04434382523174918
APQVADAIL	9	Unmodified						0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H591Y|1|0.22|ENSG00000070371|chr22:19229849-19229849|G/A|missense_variant;ENST00000466513.1_1_17:57742174-57744343:+|nuORF;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	897.504009	896.496732	1.7993	0.0016149	-0.30339	-0.00027229	1.4959	0.0013426	897.503793401072	25.322	0.14473	25.31	25.262	25.407	-0.012011	357	67	1.407258	0.03923869	1.4057386	286.1661		7.9791565	0.0059139	0.00049881	-0.00075972	NaN	63.958	230	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30910			838	170;3312	518	525							0.04434382523174918
APRGRPRRKGP	11	Unmodified	_APRGRPRRKGP_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1247.7555810739998	1	1247.75558	1246.7483	1.5586	0.0019448	-2.5665	-0.0032024	-1.0079	-0.0012576	1247.7520548001569	35.241	0.024136	35.241	35.217	35.241	0	903	118	1.0794045	0.07089925	1.0794045	218.56262	0	14.356018						176	2	3	NaN	NaN	NaN	0.77378	1	17701	17701		1.3312	0.53129	1	13900			839	582	519	526	630	630					0.1348003872803929
APSADAPMF	9	Unmodified	_APSADAPMF_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000466525.1_1_12:6646272-6646383:+|nuORF;ENST00000403475.2_1_6:84102419-84102602:+|nuORF;ENST00000511530.1_1_5:173940615-173940888:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4025801846	1	906.40258	905.395304	2.1832	0.0019788	0.56308	0.00051038	2.7463	0.0024892	906.4030134462627	23.393	0.1688	23.393	23.345	23.513	0	378	76	1.3947657	0.04464388	1.3947657	283.58365	0	9.076996						278	8	3	NaN	NaN	NaN	0.01047	1	6168	6168		91.429	63.64	1	32924			840	1819	520	527	631	631					-0.061178121710327105
APSADAPMF	9	Unmodified	_APSADAPMF_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000466525.1_1_12:6646272-6646383:+|nuORF;ENST00000403475.2_1_6:84102419-84102602:+|nuORF;ENST00000511530.1_1_5:173940615-173940888:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4025801846	1	906.40258	905.395304	2.3881	0.0021646	0.22513	0.00020406	2.6133	0.0023687	906.4032706659283	23.392	0.21717	23.379	23.331	23.548	-0.013296	375	58	1.3965509	0.0339185	1.3950315	283.94662	0	6.8963013						262	10	3	NaN	NaN	NaN	0.01047	1	6046	6046		91.429	66.468	1	31990			841	1819	520	527	632	632					-0.061178121710327105
APSADAPMF	9	Oxidation (M)	_APSADAPM(Oxidation (M))F_		APSADAPM(1)F		APSADAPM(59)F	0	0	1		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000466525.1_1_12:6646272-6646383:+|nuORF;ENST00000403475.2_1_6:84102419-84102602:+|nuORF;ENST00000511530.1_1_5:173940615-173940888:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.3974948067	1	922.397495	921.390218	1.7827	0.0016443	0.41365	0.00038155	2.1963	0.0020259	922.398313193701	20.117	0.096077	20.117	20.069	20.165	0	399	55	1.382264	0.032155514	1.382264	280.96875	0	6.5361633						174	5	3	NaN	NaN	NaN	0.030391	1	6427	6427		58.599	40.819	1	22162			842	1819	520	528	633	633		205			-0.07362116033641541
APSADAPMF	9	Oxidation (M)	_APSADAPM(Oxidation (M))F_		APSADAPM(1)F		APSADAPM(59)F	0	0	1		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000466525.1_1_12:6646272-6646383:+|nuORF;ENST00000403475.2_1_6:84102419-84102602:+|nuORF;ENST00000511530.1_1_5:173940615-173940888:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.3974948067	1	922.397495	921.390218	1.2692	0.0011707	1.305	0.0012037	2.5742	0.0023744	922.3991076912693	20.116	0.09627	20.102	20.054	20.15	-0.014141	393	61	1.3858368	0.035728455	1.3843174	281.695	0	7.2624207						168	5	3	NaN	NaN	NaN	0.030391	1	6304	6304		58.599	45.596	1	20273			843	1819	520	528	634	634		205			-0.07362116033641541
APSDLDLLI	9	Unmodified	_APSDLDLLI_					0	0	0			REV__ENSG00000089818|ENST00000339754|NECAP1	REV__ENSG00000089818|ENST00000339754|NECAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5298891882002	1	956.529889	955.522613	1.4006	0.0013397	-0.77838	-0.00074454	0.62218	0.00059513	956.5307487888243	27.567	0.12067	27.567	27.543	27.664	0	300	70	1.4411188	0.0409503	1.4411188	292.77792	0	8.319489						242	6	3	NaN	NaN	NaN	0.20577	1	7230	7230		24.961	1.6266	1	27513	+		844	8719	521	529	635	635					0.04307231974826209
APSGAPVCT	9	Unmodified	_APSGAPVCT_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	802.3763654341	1	802.376365	801.369089	1.3953	0.0011196	0.26718	0.00021438	1.6625	0.0013339	802.3776121603591	32.755	0.12067	32.752	32.703	32.824	-0.0031013	570	52	1.2801172	0.030552626	1.2785977	260.77866	0	6.2240295						104	6	2	NaN	NaN	NaN	0.47587	1	4669	4669		10.605	2.3147	1	8291.3	+		845	10641	522	530	636	636					-0.039540813425105625
APSGLFCV	8	Unmodified	_APSGLFCV_					0	0	0		ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENST00000465481.5_1_6:31633906-31635902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.3912872168	1	793.391287	792.384011	1.2625	0.0010017	1.0136	0.00080421	2.2762	0.0018059	793.3916798578538	35.842	0.14454	35.843	35.794	35.939	0.00053024	516	49	1.3124412	0.028704882	1.3109218	267.41458	0	5.8487244						140	7	2	NaN	NaN	NaN	0.78605	1	4571	4571		11.091	1.9675	1	12437			846	7108	523	531	637	637					-0.020485894745092992
APSPELYSL	9	Unmodified	_APSPELYSL_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4985890597999	1	976.498589	975.491313	2.5425	0.0024827	-1.8805	-0.0018363	0.66197	0.00064641	976.4951058540477	25.563	0.096498	25.552	25.528	25.624	-0.011602	246	52	1.4731345	0.030206561	1.4716152	299.19516	0	6.1349792						81	5	2	NaN	NaN	NaN	0.062072	1	7601	7601		41.785	22.666	1	5446.7			847	1538	524	532	638	638					0.0025865894069738715
APSPQREVL	9	Unmodified	_APSPQREVL_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.77727352675	2	498.777274	995.539994	1.0369	0.00051721	0.15776	7.8686E-05	1.1947	0.00059589	498.77716506454533	30.317	0.048267	30.311	30.311	30.359	-0.0064087	1317	61	0.8265074	0.036905527	0.82498795	335.63016	0	14.986694						85	3	2	NaN	NaN	NaN	0.62869	1	8255	8255		4.3102	0.74037	1	5998.1			848	3145	525	533	639	639					0.04204572300466225
APSQDFFL	8	Unmodified	_APSQDFFL_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4461595588001	1	924.44616	923.438883	1.6877	0.0015602	-0.87123	-0.00080541	0.81651	0.00075482	924.4451950113851	28.774	0.14482	28.774	28.725	28.87	0	306	106	1.4375578	0.062375307	1.4375578	292.1986	0	12.678436						205	7	2	NaN	NaN	NaN	0.059364	1	6468	6468		75.698	28.563	1	19237			849	3906	526	534	640	640					-0.025898794022282345
APSQDFFL	8	Unmodified	_APSQDFFL_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4461595588001	1	924.44616	923.438883	0.83935	0.00077594	1.5436	0.001427	2.3829	0.0022029	924.4481776666936	28.773	0.14477	28.765	28.74	28.885	-0.0083504	300	100	1.4411188	0.05881095	1.4395994	292.92242	0	11.953949						182	7	2	NaN	NaN	NaN	0.20037	1	6343	6343		49.961	19.351	1	16452			850	3906	526	534	641	641					-0.025898794022282345
APSRRALVVWV	11	Unmodified	_APSRRALVVWV_					0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.37748909785	2	627.377489	1252.74043	1.202	0.00075413	8.2335	0.0051655	9.4356	0.0059197	627.3833181455574	39.141	0.36154	39.141	39.068	39.43	0	1194	118	0.902037	0.07176763	0.902037	365.2745	0	29.06189						1103	16	6	NaN	NaN	NaN	0.74155	1	17854	17854		4.7291	0.80096	1	460050	+		851	9558	527	535	642	642					0.12416466687909633
APSRRALVVWV	11	Unmodified						0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.377489	1252.74043	1.202	0.00075413	8.2335	0.0051655	9.4356	0.0059197	627.3833181455574	39.141	0.36154	39.141	39.068	39.43	0	1194	118	0.902037	0.07176763	0.902037	365.2745		29.06189	0.01075	0.00021876	0.00075972	NaN	4.7291	1103	16	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460050	+		852	9558	527	535							0.12416466687909633
APSRRALVVWV	11	Unmodified						0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.377489	1252.74043	1.6843	0.0010567	7.9172	0.0049671	9.6015	0.0060238	627.383130420259	39.115	0.38527	39.119	39.095	39.48	0.0046806	1194	121	0.902037	0.07359594	0.9005176	365.2745		29.802216	-0.01075	-0.00017819	-0.00075972	NaN	4.7291	1150	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586030	+		853	9558	527	535							0.12416466687909633
APSTPATSPG	10	Unmodified	_APSTPATSPG_					0	0	0		ENST00000585782.1_1_19:3057505-3062198:-|nuORF	ENST00000585782.1_1_19:3057505-3062198:-|nuORF	ENST00000585782.1_1_19:3057505-3062198:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4312377761	1	885.431238	884.423961	2.1086	0.001867	-2.8554	-0.0025283	-0.74683	-0.00066127	885.4285470663724	17.429	0.14394	17.429	17.333	17.477	0	426	43	1.3661768	0.025036573	1.3661768	277.86957	0	5.0922546						111	7	2	NaN	NaN	NaN	0.53991	1	5858	5858		17.799	4.7961	1	8188.9			854	7697	528	536	643	643					-0.02287371270233507
APTDIEEGM	9	Unmodified	_APTDIEEGM_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4135388014	1	962.413539	961.406262	1.5964	0.0015364	0.13534	0.00013025	1.7318	0.0016667	962.4132509065918	20.021	0.12016	20.021	19.997	20.117	0	348	55	1.412609	0.032100916	1.412609	286.96088	0	6.521057						175	6	3	NaN	NaN	NaN	0.032764	1	7352	7352		55.494	23.933	1	14633			855	4092	529	537	644	644					-0.07598454587400738
APTDIEEGM	9	Unmodified	_APTDIEEGM_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4135388014	1	962.413539	961.406262	1.5926	0.0015328	0.12224	0.00011764	1.7148	0.0016504	962.4133769957666	20.044	0.096294	20.03	19.982	20.078	-0.014141	348	52	1.412609	0.030315995	1.4110895	286.96088	0	6.1584473						151	5	3	NaN	NaN	NaN	0.01452	1	7209	7209		79.199	44.76	1	11857			856	4092	529	537	645	645					-0.07598454587400738
APTDIEEGM	9	Oxidation (M)	_APTDIEEGM(Oxidation (M))_		APTDIEEGM(1)		APTDIEEGM(87)	0	0	1		ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4084534235001	1	978.408453	977.401177	1.9212	0.0018797	0.17814	0.0001743	2.0993	0.002054	978.408245046413	15.966	0.14396	15.966	15.942	16.086	0	351	67	1.4108255	0.039242864	1.4108255	286.53232	0	7.9700317						196	7	2	NaN	NaN	NaN	0.011942	1	7805	7805		87.021	42.718	1	16603			857	4092	529	538	646	646		439			-0.08842758450009569
APTDIEEGM	9	Oxidation (M)	_APTDIEEGM(Oxidation (M))_		APTDIEEGM(1)		APTDIEEGM(70)	0	0	1		ENSG00000161057|ENST00000292644|PSMC2;ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4084534235001	1	978.408453	977.401177	2.465	0.0024118	-0.82319	-0.00080542	1.6418	0.0016064	978.4084096566421	15.963	0.14369	15.951	15.903	16.047	-0.012611	351	70	1.4108255	0.041024446	1.409306	286.53232	0	8.331879						213	7	3	NaN	NaN	NaN	0.021751	1	7646	7646		69.782	29.628	1	17594			858	4092	529	538	647	647		439			-0.08842758450009569
APTLIADLF	9	Unmodified	_APTLIADLF_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;ENST00000569969.5_2_16:28986191-28992937:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.540059944	1	960.54006	959.532783	1.4717	0.0014136	2.4116	0.0023165	3.8833	0.0037301	960.5418681244789	35.094	0.072384	35.094	35.046	35.119	-4.5776E-05	213	40	1.4926696	0.023074627	1.4911501	303.23294	0	4.687561						80	4	2	NaN	NaN	NaN	0.094712	1	7185	7185		36.586	8.7976	1	6253.8			859	4685	530	539	648	648					0.051398397000298246
APTLIADLF	9	Unmodified						0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;ENST00000569969.5_2_16:28986191-28992937:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	960.54006	959.532783	0.58989	0.00056661	0.65475	0.00062892	1.2446	0.0011955	960.5403756490575	35.096	0.072392	35.096	35.072	35.144	0	213	46	1.4926696	0.026627302	1.4926696	303.23297		5.4093018	0.00073062	-0.0011292	0.00075972	NaN	36.586	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7020.9			860	4685	530	539							0.051398397000298246
APTPQTPQ	8	Unmodified	_APTPQTPQ_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.4257584677001	1	839.425758	838.418482	1.2598	0.0010575	0.31581	0.0002651	1.5756	0.0013226	839.426155933769	21.489	0.12055	21.475	21.45	21.571	-0.014006	543	136	1.296287	0.08071101	1.2947675	263.876	0	16.42978						240	6	2	NaN	NaN	NaN	0.29743	1	5119	5119		42.318	0	1	30114	+		861	9416	531	540	649	649					-0.007190500620367857
APTPQTPQ	8	Unmodified						0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.425758	838.418482	1.6766	0.0014074	0.11836	9.9355E-05	1.795	0.0015068	839.4258403236997	21.488	0.14456	21.488	21.464	21.609	0	543	127	1.296287	0.07533431	1.296287	263.876		15.335266	0.006982	-9.7692E-05	0.00075972	NaN	42.318	261	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24766	+		862	9416	531	540							-0.007190500620367857
APTPQTPQ	8	Unmodified						0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	839.425758	838.418482	1.2598	0.0010575	0.31581	0.0002651	1.5756	0.0013226	839.426155933769	21.489	0.12055	21.475	21.45	21.571	-0.014006	543	136	1.296287	0.08071101	1.2947675	263.876		16.42978	-0.006982	6.8052E-05	-0.00075972	NaN	42.318	240	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30114	+		863	9416	531	540							-0.007190500620367857
APVAAAALA	9	Unmodified	_APVAAAALA_					0	0	0		ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.4457656282998	1	754.445766	753.438489	1.7017	0.0012838	-4.3695	-0.0032966	-2.6678	-0.0020127	754.442325066496	29.884	0.096531	29.884	29.836	29.932	0	603	55	1.2603331	0.032393098	1.2603331	257.02335	0	6.6060333						136	5	3	NaN	NaN	NaN	0.6907	1	4124	4124		0	0	1	15822			864	5023	532	541	650	650					0.051907456685398756
APVAAAALA	9	Unmodified						0	0	0		ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	754.445766	753.438489	1.2789	0.00096487	-2.6232	-0.0019791	-1.3443	-0.0010142	754.4435323793515	29.883	0.14476	29.876	29.828	29.972	-0.0070667	603	52	1.2603331	0.030591846	1.2588136	257.02332		6.238678	-0.0039968	0.00047895	-0.00075972	NaN	0	117	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14959			865	5023	532	541							0.051907456685398756
APVFRDYVF	9	Unmodified	_APVFRDYVF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2900167612501	2	557.290017	1112.56548	1.9115	0.0010653	0.5279	0.00029419	2.4394	0.0013595	557.7937360473541	25.66	0.096567	25.66	25.588	25.684	0	1236	109	0.876284	0.06620771	0.876284	355.33298	0	26.847229						180	5	3	NaN	NaN	NaN	0.3947	1	13383	13383		13.949	1.9001	1	42745			866	1110	533	542	651	651					0.013700468228989848
APVKYDHIL	9	Unmodified	_APVKYDHIL_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.29784179335	2	528.297842	1054.58113	1.9808	0.0010464	-1.7695	-0.0009348	0.21129	0.00011163	528.2964787548964	17.909	0.071939	17.909	17.885	17.957	0	1257	67	0.86339295	0.040530264	0.86339295	350.3411	0	16.446075						118	4	2	NaN	NaN	NaN	0.44834	1	10854	10854		11.739	0.56853	1	12412			867	3752	534	543	652	652					0.056023333399252806
APVKYDHIL	9	Unmodified						0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.297842	1054.58113	1.6619	0.00087796	0.69695	0.0003682	2.3588	0.0012462	528.2985250032408	18.002	0.216	17.988	17.868	18.084	-0.013786	1257	67	0.86339295	0.04051715	0.8618735	350.34106		16.440735	0.039517	0.0012427	-0.00075972	NaN	11.739	185	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14599			868	3752	534	543							0.056023333399252806
APVLPEPIL	9	Unmodified	_APVLPEPIL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5764454503002	1	948.576445	947.569169	1.0697	0.0010147	0.76224	0.00072304	1.832	0.0017377	948.5771083328847	30.631	0.096527	30.625	30.577	30.673	-0.0057545	261	82	1.4642475	0.04802096	1.462728	297.5122	0	9.757111						223	5	3	NaN	NaN	NaN	0.0081087	1	6905	6905		96.245	19.982	1	25284			869	4398	535	544	653	653					0.09328716596769482
APVLPEPIL	9	Unmodified						0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.576445	947.569169	1.308	0.0012407	-1.2574	-0.0011927	0.050605	4.8003E-05	948.5754062012905	30.632	0.12069	30.632	30.584	30.704	0	261	88	1.4642475	0.051589012	1.4642475	297.5122		10.482086	0.0034002	-0.00093777	0.00075972	NaN	96.245	240	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25173			870	4398	535	544							0.09328716596769482
APVSFFLVL	9	Unmodified	_APVSFFLVL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5815308282	1	992.581531	991.574254	1.3336	0.0013237	-0.11298	-0.00011214	1.2206	0.0012115	992.5814422048295	38.756	0.24027	38.756	38.684	38.924	0	180	106	1.5121819	0.06205809	1.5121819	307.0563	0	12.601227						591	11	4	NaN	NaN	NaN	0.03623	1	8293	8293		52.758	8.4559	1	127570			871	1230	536	545	654	654					0.07813020459366271
APVSFFLVL	9	Unmodified						0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.581531	991.574254	1.8429	0.0018292	-0.091109	-9.0433E-05	1.7518	0.0017388	992.5815913146944	38.754	0.31236	38.758	38.686	38.998	0.0040245	177	94	1.5139546	0.054971695	1.5124352	307.41626		11.162262	0.00092819	9.6612E-06	0.00012664	NaN	52.758	630	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134810			872	1230	536	545							0.07813020459366271
APWPVGHK	8	Unmodified	_APWPVGHK_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	891.4835481181001	1	891.483548	890.476272	-0.26989	-0.0002406	4.5602	0.0040654	4.2904	0.0038248	891.4879682521059	54.522	0.12054	54.521	54.497	54.617	-0.0006218	255	49	1.4678029	0.028440237	1.4662834	298.5084	0	5.7839355						126	6	2	NaN	NaN	NaN	0.84207	1	5818	5818		3.5732	0.78803	1	10581	+		873	11993	537	546	655	655					0.026652566540406042
APYEADAQL	9	Unmodified	_APYEADAQL_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.4574525265999	1	977.457453	976.450176	1.8375	0.0017961	-1.1301	-0.0011046	0.70744	0.00069149	977.4569789064768	20.141	0.096079	20.141	20.117	20.213	0	297	61	1.4428991	0.03559947	1.4428991	293.0503	0	7.230194						116	5	2	NaN	NaN	NaN	0.017076	1	7787	7787		75.698	20.285	1	12848			874	4941	538	547	656	656					-0.0389910209877371
APYSVDQSL	9	Unmodified	_APYSVDQSL_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.4731025908001	1	979.473103	978.465826	1.6928	0.001658	1.7518	0.0017159	3.4446	0.0033739	979.4740542469801	21.344	0.16846	21.344	21.272	21.44	0	279	61	1.4535767	0.03558433	1.4535767	295.21042	0	7.2269287						165	8	2	NaN	NaN	NaN	0.054111	1	7836	7836		45.165	7.8626	1	18041			875	2432	539	548	657	657					-0.024268155817139814
APYSVDQSL	9	Unmodified	_APYSVDQSL_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.4731025908001	1	979.473103	978.465826	1.7237	0.0016883	1.5543	0.0015224	3.2779	0.0032107	979.4751672977317	21.344	0.19243	21.33	21.258	21.45	-0.014006	279	76	1.4535767	0.04447806	1.4520572	295.21042	0	9.033142						206	9	3	NaN	NaN	NaN	0.019939	1	7675	7675		72.076	27.438	1	18279			876	2432	539	548	658	658					-0.024268155817139814
AQAKALPS	8	Unmodified	_AQAKALPS_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.4515792876999	1	785.451579	784.444303	2.028	0.0015929	-11.388	-0.0089447	-9.3599	-0.0073518	785.4424898956921	53.972	0.048012	53.972	53.972	54.02	0	432	43	1.3625998	0.02504456	1.3625998	277.6825	0	5.1037903						56	3	2	NaN	NaN	NaN	0.8439	1	4560	4560		3.1533	1.7138	1	3359.7			877	5324	540	549	659	659					0.04345844180215863
AQAKIYWNL	9	Unmodified	_AQAKIYWNL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.803291312	2	553.803291	1105.59203	1.3718	0.00075973	-2.6029	-0.0014415	-1.231	-0.00068173	553.8015020642606	23.803	0.19275	23.803	23.778	23.971	0	1224	82	0.883646	0.049669147	0.883646	358.34592	0	20.142395						234	9	3	NaN	NaN	NaN	0.12328	1	13091	13091		32.453	7.4917	1	44766			878	5649;5713	541	550	660	660					0.0434573571421879
AQAKIYWNL	9	Unmodified	_AQAKIYWNL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.803291312	2	553.803291	1105.59203	1.5769	0.00087331	-1.8542	-0.0010269	-0.27728	-0.00015356	553.8022120415768	23.85	0.16877	23.837	23.789	23.958	-0.013048	1224	79	0.883646	0.047842503	0.88212657	358.34592	0	19.401642						258	8	3	NaN	NaN	NaN	0.25448	1	12731	12731		21.835	4.9767	1	46406			879	5649;5713	541	550	661	661					0.0434573571421879
AQALGPGE	8	Unmodified	_AQALGPGE_					0	0	0			REV__ENSG00000205899|ENST00000391429|BHLHA9	REV__ENSG00000205899|ENST00000391429|BHLHA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3729946157001	1	742.372995	741.365718	1.9572	0.001453	4.1988	0.0031171	6.1561	0.0045701	742.3758962812691	23.609	0.072374	23.596	23.548	23.621	-0.013048	591	79	1.26753	0.04675007	1.2660105	258.56622	0	9.536667						140	4	2	NaN	NaN	NaN	0.82797	1	3858	3858		5.4659	0	1	24318	+		880	11271	542	551	662	662					-0.015310081248458118
AQAQPGVP	8	Unmodified	_AQAQPGVP_					0	0	0		MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant;ENSG00000117983|ENST00000529681|MUC5B	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.20595278085	2	384.205953	766.397353	1.2894	0.00049539	-5.2018	-0.0019986	-3.9124	-0.0015032	384.20405870043294	26.77	0.21769	26.77	26.674	26.891	0	1440	46	0.7506418	0.027818918	0.7506418	306.06146	0	11.342682						220	10	3	NaN	NaN	NaN	0.8439	1	4304	4304		3.1533	0	1	24792			881	2160	543	552	663	663					0.004809846290982023
AQATCPTF	8	Unmodified	_AQATCPTF_					0	0	0			REV__ENST00000206423.7_2_3:112323420-112323531:-|nuORF	REV__ENST00000206423.7_2_3:112323420-112323531:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	838.3763654341001	1	838.376365	837.369089	1.5977	0.0013395	-3.931	-0.0032957	-2.3333	-0.0019562	838.3727381482502	25.394	0.28954	25.382	25.31	25.6	-0.012011	480	61	1.3339561	0.03583896	1.3324367	271.54953	0	7.2956543						288	13	3	NaN	NaN	NaN	0.67593	1	5104	5104		20.555	0	1	33849	+		882	11451	544	553	664	664					-0.056100813425018714
AQEASEEL	8	Unmodified	_AQEASEEL_					0	0	0			REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.3945179188	1	876.394518	875.387241	0.73367	0.00064298	2.8474	0.0024955	3.5811	0.0031385	876.3971463962221	31.572	0.1207	31.568	31.519	31.64	-0.0044155	426	40	1.3661768	0.023247004	1.3646574	277.91348	0	4.729004						97	6	2	NaN	NaN	NaN	0.83211	1	5603	5603		4.9097	0	1	6265.7	+		883	11790	545	554	665	665					-0.05543667886797721
AQGPKQMNI	9	Unmodified	_AQGPKQMNI_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.75802652860006	2	493.758027	985.5015	1.8307	0.00090394	-6.5382	-0.0032283	-4.7075	-0.0023244	493.75567916356454	23.706	0.096371	23.706	23.658	23.754	0	1326	40	0.8209676	0.024008036	0.8209676	333.4269	0	9.75058						84	5	2	NaN	NaN	NaN	0.55027	1	8059	8059		7.5404	0.67717	1	5099.8			884	2926	546	555	666	666					0.008169433943066906
AQHLAEVD	8	Unmodified	_AQHLAEVD_					0	0	0			REV__ENST00000497936.5_1_6:84884653-84936120:-|nuORF	REV__ENST00000497936.5_1_6:84884653-84936120:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.4315721271	1	882.431572	881.424296	0.30107	0.00026567	3.0471	0.0026888	3.3481	0.0029545	882.4336484160809	56.467	0.095985	56.466	56.466	56.562	-0.00056458	447	37	1.3536539	0.021473646	1.3521345	275.33685	0	4.367798						58	5	2	NaN	NaN	NaN	0.84455	1	5698	5698		2.7852	0	1	3534.2	+		885	9611	547	556	667	667					-0.021159515503882176
AQIEPEEWMF	10	Unmodified	_AQIEPEEWMF_					0	0	0			REV__ENSG00000124701|ENST00000244669|APOBEC2	REV__ENSG00000124701|ENST00000244669|APOBEC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.1936346607333	3	427.193635	1278.55907	1.2581	0.00053743	6.2657	0.0026767	7.5238	0.0032141	427.1964378108836	26.432	0.14478	26.421	26.373	26.517	-0.011137	1437	43	0.7524962	0.025957286	0.75097674	456.9738	0	15.763245						97	7	2	NaN	NaN	NaN	0.75966	1	17568	17568		1.6985	0	1	8452.8	+		886	9381	548	557	668	668					-0.06906259190805031
AQKKAKRS	8	Unmodified	_AQKKAKRS_					0	0	0			REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.5686747310001	1	916.568675	915.561398	1.2333	0.0011304	-0.086065	-7.8885E-05	1.1472	0.0010515	916.5692794312705	31.983	0.072422	31.983	31.959	32.032	0	333	46	1.4215236	0.026735067	1.4215236	288.976	0	5.4348755						90	4	3	NaN	NaN	NaN	0.84887	1	6346	6346		0.32989	0	1	7004.6	+		887	12697	549	558	669	669					0.10024002119848774
AQLPILLTHA	10	Unmodified	_AQLPILLTHA_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.8267664083002	2	538.826766	1075.63898	1.1214	0.00060426	2.6471	0.0014263	3.7685	0.0020306	538.8280951115396	31.38	0.28964	31.38	31.332	31.621	0	1236	52	0.876284	0.03129351	0.876284	355.48218	0	12.694824						368	13	5	NaN	NaN	NaN	0.47601	1	11809	11809		20.449	0	1	120020	+		888	8384	550	559	670	670					0.10418595265377917
AQLSGVDSS	9	Unmodified	_AQLSGVDSS_					0	0	0			REV__nc|ENSG00000136944|O60663-2|LMX1B	REV__nc|ENSG00000136944|O60663-2|LMX1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2088894003	2	432.208889	862.403226	1.7054	0.00073708	-5.1695	-0.0022343	-3.4642	-0.0014972	432.2064593939633	23.441	0.096598	23.427	23.403	23.5	-0.013294	1323	40	0.8228144	0.024005413	0.82129496	334.83267	0	9.768707						103	5	3	NaN	NaN	NaN	0.66196	1	5419	5419		2.4615	0.53688	1	8056.9	+		889	9673	551	560	671	671					-0.03347961649899389
AQLSGVDSS	9	Unmodified						0	0	0			REV__nc|ENSG00000136944|O60663-2|LMX1B	REV__nc|ENSG00000136944|O60663-2|LMX1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	432.208889	862.403226	1.5361	0.00066394	-4.8332	-0.002089	-3.2971	-0.001425	432.20681632037184	23.417	0.096502	23.417	23.393	23.489	0	1323	46	0.8228144	0.027701616	0.8228144	334.83267		11.272766	-0.0052149	0.00013619	0.00075972	NaN	2.4615	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10544	+		890	9673	551	560							-0.03347961649899389
AQLSGVDSS	9	Unmodified						0	0	0			REV__nc|ENSG00000136944|O60663-2|LMX1B	REV__nc|ENSG00000136944|O60663-2|LMX1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.208889	862.403226	1.7054	0.00073708	-5.1695	-0.0022343	-3.4642	-0.0014972	432.2064593939633	23.441	0.096598	23.427	23.403	23.5	-0.013294	1323	40	0.8228144	0.024005413	0.82129496	334.83267		9.768707	0.0052149	-0.00015455	-0.00075972	NaN	2.4615	103	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8056.9	+		891	9673	551	560							-0.03347961649899389
AQLSRDEAVY	10	Unmodified	_AQLSRDEAVY_					0	0	0			REV__ENSG00000111816|ENST00000606080|FRK	REV__ENSG00000111816|ENST00000606080|FRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2882023538001	2	576.288202	1150.56185	1.9967	0.0011507	-2.368	-0.0013647	-0.3713	-0.00021398	576.286339590424	17.621	0.071943	17.621	17.597	17.669	0	1221	37	0.885486	0.022081137	0.885486	358.91925	0	8.950256						92	4	3	NaN	NaN	NaN	0.74854	1	14829	14829		4.7291	0.31598	1	7254.1	+		892	9106	552	561	672	672					-0.007406677416156526
AQPGFFDRF	9	Unmodified	_AQPGFFDRF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7641661515	2	542.764166	1083.51378	1.2608	0.0006843	-1.4703	-0.00079804	-0.20956	-0.00011374	542.7633876243762	24.502	0.19291	24.502	24.454	24.647	0	1260	73	0.8615505	0.04422921	0.8615505	349.47314	0	17.940796						233	9	4	NaN	NaN	NaN	0.40649	1	12116	12116		13.463	3.8514	1	27218			893	3358	553	562	673	673					-0.024636968710183282
AQPGFFDRF	9	Unmodified						0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.764166	1083.51378	1.2968	0.00070385	-0.98547	-0.00053488	0.31132	0.00016897	542.7632599089121	24.526	0.12065	24.514	24.465	24.586	-0.012392	1260	55	0.8615505	0.033157587	0.8600311	349.47314		13.449768	0.0058101	0.00026064	-0.00075972	NaN	13.463	157	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20951			894	3358	553	562							-0.024636968710183282
AQPSQVPL	8	Unmodified	_AQPSQVPL_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.462143974	1	839.462144	838.454868	1.8495	0.0015526	0.80828	0.00067852	2.6578	0.0022311	839.462895559915	21.754	0.048153	21.754	21.73	21.778	0	465	43	1.3429124	0.025071263	1.3429124	273.36703	0	5.1035767						68	3	2	NaN	NaN	NaN	0.59183	1	5252	5252		25.801	1.2389	1	5370.8	+		895	9625	554	563	674	674					0.029178268346640834
AQPSQVPL	8	Unmodified						0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.462144	838.454868	1.8495	0.0015526	0.80828	0.00067852	2.6578	0.0022311	839.462895559915	21.754	0.048153	21.754	21.73	21.778	0	465	43	1.3429124	0.025071263	1.3429124	273.36703		5.1035767	0.019046	0.00028956	0.00075972	NaN	25.801	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5370.8	+		896	9625	554	563							0.029178268346640834
AQPSQVPL	8	Unmodified						0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	839.462144	838.454868	1.5784	0.001325	-0.022208	-1.8643E-05	1.5562	0.0013063	839.4613692463244	21.729	0.096308	21.715	21.691	21.788	-0.013897	465	40	1.3429124	0.02327931	1.341393	273.36703		4.7387695	-0.019046	-0.0004076	-0.00075972	NaN	25.801	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4920.1	+		897	9625	554	563							0.029178268346640834
AQTVFLLL	8	Unmodified	_AQTVFLLL_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.5502306998002	1	904.550231	903.542954	1.095	0.0009905	0.027423	2.4805E-05	1.1224	0.0010153	904.5494853189748	31.139	0.072393	31.139	31.115	31.187	0	330	55	1.4233059	0.032076955	1.4233059	289.39532	0	6.5220947						75	4	2	NaN	NaN	NaN	0.69825	1	6155	6155		19.164	2.5794	1	5847.2			898	5201	555	564	675	675					0.08732447425290957
AQVPTTAVTI	10	Unmodified	_AQVPTTAVTI_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7873068968	2	500.787307	999.560061	2.1299	0.0010666	-0.60817	-0.00030456	1.5218	0.00076208	500.7872819200779	18.053	0.095898	18.053	18.053	18.149	0	1329	34	0.81912065	0.020318925	0.81912065	332.61234	0	8.250702						68	5	2	NaN	NaN	NaN	0.77513	1	8583	8583		1.7022	0	1	6698.6			899	2127	556	565	676	676					0.060263232404167866
AQVPTTAVTI	10	Unmodified						0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.787307	999.560061	2.27	0.0011368	-3.2181	-0.0016116	-0.9481	-0.0004748	500.7856269966169	18.098	0.048006	18.084	18.06	18.108	-0.013786	1329	31	0.81912065	0.01847279	0.8176012	332.61234		7.5010376	0.015569	-0.00093182	-0.00075972	NaN	1.7022	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4492.2			900	2127	556	565							0.060263232404167866
AQYHLEEL	8	Unmodified	_AQYHLEEL_					0	0	0			REV__ENST00000524792.5_1_11:108158320-108236232:+|nuORF	REV__ENST00000524792.5_1_11:108158320-108236232:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.74818173630007	2	501.748182	1001.48181	1.2504	0.0006274	4.7952	0.002406	6.0456	0.0030334	501.75100400486696	26.504	0.072378	26.494	26.47	26.542	-0.010645	1263	40	0.85970795	0.023953617	0.8581885	349.0841	0	9.726349						95	4	3	NaN	NaN	NaN	0.78264	1	8476	8476		11.548	1.4969	1	10552	+		901	9993	557	566	677	677					-0.0188710934479559
ARFYYVHSKF	10	Unmodified	_ARFYYVHSKF_					0	0	0			REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3405722752999	2	659.340572	1316.66659	1.4389	0.0009487	-5.3265	-0.003512	-3.8876	-0.0025633	659.3372696323349	28.484	0.21723	28.484	28.412	28.629	0	1101	67	0.95892316	0.040325046	0.95892316	388.10464	0	16.32077						160	10	2	NaN	NaN	NaN	0.65442	1	19060	19060		11.17	2.8928	1	14562	+		902	10059	558	567	678	678					0.020924985255760475
ARFYYVHSKF	10	Unmodified						0	0	0			REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	659.340572	1316.66659	1.4389	0.0009487	-5.3265	-0.003512	-3.8876	-0.0025633	659.3372696323349	28.484	0.21723	28.484	28.412	28.629	0	1101	67	0.95892316	0.040325046	0.95892316	388.10464		16.32077	-0.0075407	-0.00036232	0.0016758	NaN	11.17	160	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14562	+		903	10059	558	567							0.020924985255760475
ARFYYVHSKF	10	Unmodified						0	0	0			REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	659.340572	1316.66659	1.2224	0.00080596	-4.7987	-0.003164	-3.5763	-0.002358	659.3387061080293	28.507	0.12065	28.499	28.451	28.572	-0.0083485	1104	61	0.9570911	0.036655188	0.95557165	387.36316		14.835449	0.0075407	0.00033367	-0.0016758	NaN	11.17	146	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11850	+		904	10059	558	567							0.020924985255760475
ARGGAAPK	8	Unmodified	_ARGGAAPK_					0	0	0		ENST00000481981.1_1_1:229406900-229424591:+|nuORF	ENST00000481981.1_1_1:229406900-229424591:+|nuORF	ENST00000481981.1_1_1:229406900-229424591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.21411216395	2	364.214112	726.413671	1.6822	0.0006127	5.9429	0.0021645	7.6251	0.0027772	364.21561339956486	55.196	0.072262	55.196	55.196	55.268	0	1458	40	0.7395112	0.024122834	0.7395112	301.81403	0	9.845154						86	4	3	NaN	NaN	NaN	0.84727	1	3714	3714		1.2418	0.91196	1	7485.5			905	7209	559	568	679	679					0.039521105858511874
ARGGGGGH	8	Unmodified	_ARGGGGGH_					0	0	0			REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492	1	668.322296	667.31502	0.83077	0.00055522	2.73	0.0018245	3.5608	0.0023798	668.3239611372733	35.458	0.024105	35.458	35.434	35.458	0	741	64	1.1773466	0.03798449	1.1773466	240.65288	0	7.764145						62	2	2	NaN	NaN	NaN	0.84887	1	2520	2520		0.32989	0.32989	1	5539.6	+		906	12942	560	569	680	680					-0.03194492659201842
ARGGGGGH	8	Unmodified	_ARGGGGGH_					0	0	0			REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.6647864579	2	334.664786	667.31502	2.258	0.00075566	3.5937	0.0012027	5.8517	0.0019583	334.66736465317217	51.565	0.071896	51.565	51.517	51.589	0	1530	22	0.6949163	0.013025939	0.6949163	284.077	0	5.32489						36	4	2	NaN	NaN	NaN	0.84876	1	2533	2533		0.39566	0.39566	1	1711.3	+		907	12942	560	569	681	681					-0.03194492659201842
ARGGGGGH	8	Unmodified						0	0	0			REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	REV__ENST00000595288.5_1_19:7685958-7686162:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.664786	667.31502	2.258	0.00075566	3.5937	0.0012027	5.8517	0.0019583	334.66736465317217	51.565	0.071896	51.565	51.517	51.589	0	1530	22	0.6949163	0.013025939	0.6949163	284.077		5.32489	-0.023274	-0.00011574	0.00169	NaN	0.39566	36	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711.3	+		908	12942	560	569							-0.03194492659201842
ARGKGPGP	8	Unmodified	_ARGKGPGP_					0	0	0		ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4	ENSG00000069020|ENST00000403625|MAST4	ENSG00000069020|ENST00000403625|MAST4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.4209478613002	1	739.420948	738.413671	1.55	0.0011461	-6.3694	-0.0047097	-4.8195	-0.0035636	739.4165455570333	55.028	0.048008	55.028	55.028	55.076	0	486	73	1.3303722	0.043006897	1.3303722	271.4053	0	8.773712						95	3	2	NaN	NaN	NaN	0.84692	1	3893	3893		1.4396	0.19772	1	16274			909	740	561	570	682	682					0.03400110585857874
ARGKGPGP	8	Unmodified						0	0	0		ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4	ENSG00000069020|ENST00000403625|MAST4	ENSG00000069020|ENST00000403625|MAST4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	739.420948	738.413671	-0.26026	-0.00019244	-6.7767	-0.0050108	-7.037	-0.0052033	739.4162103229685	55.026	0.095943	55.025	55.001	55.097	-0.0006218	483	76	1.3321642	0.044796467	1.3306447	271.7709		9.138794	-0.0012148	-0.00017894	0.0001363	NaN	1.4396	130	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21704			910	740	561	570							0.03400110585857874
ARKGGAGG	8	Unmodified	_ARKGGAGG_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH;REV__ENSG00000132017|ENST00000254337|DCAF15	nc|ENSG00000100285|P12036-2|NEFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3739976687001	1	673.373998	672.366721	0.82828	0.00055774	4.1978	0.0028267	5.0261	0.0033844	673.3766857685398	28.894	0.12069	28.885	28.837	28.958	-0.0083485	663	58	1.2243022	0.034267783	1.2227827	250.21294	0	7.003372						129	6	2	NaN	NaN	NaN	0.84727	1	2577	2577		1.2418	0	1	16948			911	1215;9524	562	571	683	683					0.017432510347134667
ARKGGAGG	8	Unmodified						0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH;REV__ENSG00000132017|ENST00000254337|DCAF15	nc|ENSG00000100285|P12036-2|NEFH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	673.373998	672.366721	1.2248	0.00082476	4.0503	0.0027274	5.2751	0.0035521	673.3766546086714	28.87	0.14479	28.87	28.846	28.991	0	663	46	1.2243022	0.027053475	1.2243022	250.21294		5.5289764	-0.007494	-4.2047E-05	0.00075972	NaN	1.2418	130	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13980			912	1215;9524	562	571							0.017432510347134667
ARKKEEEELVA	11	Unmodified	_ARKKEEEELVA_					0	0	0		nc|ENSG00000130595|P45378-5|TNNT3;nc|ENSG00000130595|P45378-7|TNNT3;nc|ENSG00000130595|P45378-4|TNNT3;nc|ENSG00000130595|P45378-6|TNNT3;ENSG00000130595|ENST00000278317|TNNT3;nc|ENSG00000130595|P45378-3|TNNT3;nc|ENSG00000130595|P45378|TNNT3	nc|ENSG00000130595|P45378-5|TNNT3	nc|ENSG00000130595|P45378-5|TNNT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.35661627	2	651.356616	1300.69868	0.78388	0.00051059	-0.55147	-0.0003592	0.23241	0.00015138	651.356738907604	41.4	0.12041	41.408	41.36	41.481	0.0082588	1230	58	0.8799654	0.034952402	0.878446	356.1935	0	14.148071						120	6	4	NaN	NaN	NaN	0.77466	1	17965	17965		1.1768	0.48567	1	6459.8			913	2652	563	572	684	684					0.060358214180723735
ARKRNAGP	8	Unmodified	_ARKRNAGP_					0	0	0			REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.2568426459	2	435.256843	868.499132	1.4604	0.00063566	2.6449	0.0011512	4.1053	0.0017869	435.2585015566146	22.163	0.072374	22.163	22.163	22.236	0	1377	28	0.7895419	0.01665157	0.7895419	321.25754	0	6.7753906						56	4	2	NaN	NaN	NaN	0.77489	1	5647	5647		12.588	2.2277	1	3730.6	+		914	11682	564	573	685	685					0.05962275771514669
ARKRNAGP	8	Unmodified						0	0	0			REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	435.256843	868.499132	1.4604	0.00063566	2.6449	0.0011512	4.1053	0.0017869	435.2585015566146	22.163	0.072374	22.163	22.163	22.236	0	1377	28	0.7895419	0.01665157	0.7895419	321.25754		6.7753906	-0.0049893	0.0016114	-0.0010904	NaN	12.588	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3730.6	+		915	11682	564	573							0.05962275771514669
ARKWQMQGLT	10	Unmodified	_ARKWQMQGLT_					0	0	0			REV__ENST00000488079.1_1_7:100189300-100192029:+|nuORF	REV__ENST00000488079.1_1_7:100189300-100192029:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.88524689343336	3	406.885247	1217.63391	1.8608	0.00075715	-3.2723	-0.0013315	-1.4115	-0.00057432	406.8855773457877	23.441	0.048252	23.441	23.441	23.489	0	1443	25	0.7487872	0.014837563	0.7487872	454.9641	0	9.01535						34	3	2	NaN	NaN	NaN	0.76548	1	16936	16936		1.5256	0	1	2147.1	+		916	8986	565	574	686	686					0.03379968131116584
ARLQQLLFVIF	11	Unmodified	_ARLQQLLFVIF_					0	0	0		ENSG00000180708|ENST00000641042|OR10K2;ENSG00000173285|ENST00000641535|OR10K1	ENSG00000180708|ENST00000641042|OR10K2	ENSG00000180708|ENST00000641042|OR10K2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.9430905316667	3	449.943091	1346.80744	1.0585	0.00047627	1.4193	0.00063859	2.4778	0.0011149	450.277784295347	30.318	0.12065	30.318	30.27	30.391	0	1395	34	0.7784366	0.020365238	0.7784366	472.47113	0	12.360626						101	6	2	NaN	NaN	NaN	0.65815	1	19505	19505		10.204	5.6605	1	11907			917	4886	566	575	687	687					0.14791077179029344
ARNQAVPG	8	Unmodified	_ARNQAVPG_					0	0	0		ENST00000460538.5_1_22:45928872-45931215:+|nuORF	ENST00000460538.5_1_22:45928872-45931215:+|nuORF	ENST00000460538.5_1_22:45928872-45931215:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.7223013368	2	406.722301	811.43005	2.0067	0.00081618	-9.5083	-0.0038672	-7.5016	-0.003051	406.7182882402638	18.074	0.14404	18.06	17.988	18.132	-0.013786	1404	31	0.77288127	0.018520832	0.7713618	314.82227	0	7.5441895						88	7	2	NaN	NaN	NaN	0.84651	1	4812	4812		1.6704	0.2308	1	7386.2			918	7074	567	576	688	688					0.01679191751941289
ARNQAVPG	8	Unmodified						0	0	0		ENST00000460538.5_1_22:45928872-45931215:+|nuORF	ENST00000460538.5_1_22:45928872-45931215:+|nuORF	ENST00000460538.5_1_22:45928872-45931215:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	406.722301	811.43005	1.7483	0.00071106	-10.352	-0.0042105	-8.604	-0.0034994	406.71773218151503	18.005	0.11988	18.005	17.981	18.101	0	1404	61	0.77288127	0.03702563	0.77288127	314.82227		15.081879	-0.027559	-0.00038902	0.00075972	NaN	1.6704	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7911.3			919	7074	567	576							0.01679191751941289
ARPPVLLC	8	Unmodified	_ARPPVLLC_					0	0	0			REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.5073200276001	1	868.50732	867.500044	1.0393	0.00090262	4.1407	0.0035962	5.18	0.0044988	868.510687732058	30.293	0.072372	30.287	30.238	30.311	-0.0064106	438	49	1.359022	0.02862537	1.3575026	276.4969	0	5.8239136						80	4	2	NaN	NaN	NaN	0.84651	1	5493	5493		1.6704	0	1	7323.8	+		920	11876	568	577	689	689					0.06099354096204479
ARPPVLLC	8	Unmodified						0	0	0			REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	868.50732	867.500044	1.7094	0.0014847	4.5416	0.0039444	6.2511	0.0054291	868.512417379838	30.294	0.072397	30.294	30.246	30.318	0	435	46	1.360811	0.026837707	1.360811	276.86087		5.4602356	0.0036873	0.00022382	0.0016542	NaN	1.6704	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9638.8	+		921	11876	568	577							0.06099354096204479
ARPPVLLC	8	Unmodified						0	0	0			REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	REV__ENST00000369063.7_1_6:107077156-107077285:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	868.50732	867.500044	1.0393	0.00090262	4.1407	0.0035962	5.18	0.0044988	868.510687732058	30.293	0.072372	30.287	30.238	30.311	-0.0064106	438	49	1.359022	0.02862537	1.3575026	276.4969		5.8239136	-0.0036873	-0.00012439	-0.0016542	NaN	1.6704	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7323.8	+		922	11876	568	577							0.06099354096204479
ARRTVGPRA	9	Unmodified	_ARRTVGPRA_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	328.53342490396665	3	328.533425	982.578445	2.3712	0.00077901	-0.032873	-1.08E-05	2.3383	0.00076821	328.53353490622123	18.868	0.14404	18.868	18.82	18.964	0	1497	28	0.71537006	0.016725838	0.71537006	435.82108	0	10.189789						46	7	2	NaN	NaN	NaN	0.66529	1	7983	7983		1.04	0	1	2429.7			923	7708	569	578	690	690					0.08645922725645505
ARVNTNEHG	9	Unmodified	_ARVNTNEHG_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.24412920115003	2	499.244129	996.473705	1.5991	0.00079832	5.3042	0.0026481	6.9033	0.0034464	499.2471420865364	32.587	0.04826	32.587	32.563	32.611	0	1392	28	0.780288	0.016662419	0.780288	316.8572	0	6.7662354						38	3	2	NaN	NaN	NaN	0.66822	1	8438	8438		1.9246	0	1	2613.7	+		924	9335	570	579	691	691					-0.024672435415709515
ARVPFSMKFF	10	Unmodified	_ARVPFSMKFF_					0	0	0		ENSG00000198840|ENST00000361227|MT-ND3	ENSG00000198840|ENST00000361227|MT-ND3	ENSG00000198840|ENST00000361227|MT-ND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3286189930001	2	615.328619	1228.64269	1.5443	0.00095026	-1.7577	-0.0010815	-0.21335	-0.00013128	615.3281057017622	18.197	0.095915	18.197	18.173	18.268	0	1173	43	0.91489893	0.025716841	0.91489893	370.5621	0	10.416107						83	5	2	NaN	NaN	NaN	0.77729	1	17221	17221		1.1768	0	1	9105.1			925	5820	571	580	692	692					0.03750941767589211
ASAAGSCV	8	Unmodified	_ASAAGSCV_					0	0	0			REV__ENST00000380877.7_1_15:50601985-50647294:-|nuORF	REV__ENST00000380877.7_1_15:50601985-50647294:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.14978896015	2	333.149789	664.285025	0.99583	0.00033176	1.1569	0.00038542	2.1527	0.00071718	333.1502766048754	33.407	0.16893	33.407	33.359	33.528	0	1506	76	0.70979416	0.04648584	0.70979416	290.1855	0	19.004822						239	8	2	NaN	NaN	NaN	0.83211	1	2427	2427		4.9097	0	1	23218	+		926	11967	572	581	693	693					-0.06054612439402263
ASAAGSCV	8	Unmodified						0	0	0			REV__ENST00000380877.7_1_15:50601985-50647294:-|nuORF	REV__ENST00000380877.7_1_15:50601985-50647294:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.149789	664.285025	0.99583	0.00033176	1.1569	0.00038542	2.1527	0.00071718	333.1502766048754	33.407	0.16893	33.407	33.359	33.528	0	1506	76	0.70979416	0.04648584	0.70979416	290.1855		19.004822	0	0	0	NaN	4.9097	239	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23218	+		927	11967	572	581							-0.06054612439402263
ASAGAAFLF	9	Unmodified	_ASAGAAFLF_					0	0	0		ENST00000279101.9_1_20:60965807-60965945:-|nuORF	ENST00000279101.9_1_20:60965807-60965945:-|nuORF	ENST00000279101.9_1_20:60965807-60965945:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.4406802504	1	854.44068	853.433404	1.0437	0.00089178	4.1489	0.003545	5.1926	0.0044367	854.4441246043951	34.227	0.28932	34.225	34.153	34.442	-0.0012474	411	97	1.3751161	0.05722654	1.3735967	279.84323	0	11.645905						458	13	4	NaN	NaN	NaN	0.55027	1	5302	5302		7.5404	1.45	1	78089			928	6359	573	582	694	694					0.0008244180594374484
ASAGAAFLF	9	Unmodified						0	0	0		ENST00000279101.9_1_20:60965807-60965945:-|nuORF	ENST00000279101.9_1_20:60965807-60965945:-|nuORF	ENST00000279101.9_1_20:60965807-60965945:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	854.44068	853.433404	1.6247	0.0013882	4.1843	0.0035752	5.809	0.0049634	854.444128579507	34.228	0.28936	34.228	34.155	34.445	0	414	91	1.3733286	0.053655505	1.3733286	279.47946		10.919189	0.001179	1.121E-05	-0.00013402	NaN	7.5404	468	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79294			929	6359	573	582							0.0008244180594374484
ASAGHLNA	8	Unmodified	_ASAGHLNA_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.3685779398	1	740.368578	739.361301	0.91937	0.00068068	-9.1623	-0.0067835	-8.2429	-0.0061028	740.3619876339536	31.572	0.16894	31.568	31.519	31.688	-0.0044155	561	61	1.2855089	0.035942435	1.2839894	262.24673	0	7.3323364						118	8	2	NaN	NaN	NaN	0.83211	1	3824	3824		4.9097	0.49665	1	9979.7	+		930	8815	574	583	695	695					-0.01880472547759382
ASAGHLNA	8	Unmodified						0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	740.368578	739.361301	0.76587	0.00056703	-7.5157	-0.0055644	-6.7499	-0.0049974	740.3632928765078	31.573	0.14483	31.573	31.549	31.694	0	561	46	1.2855089	0.026952505	1.2855089	262.24673		5.498352	0.0027441	0.00049711	0.00075972	NaN	4.9097	98	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8796	+		931	8815	574	583							-0.01880472547759382
ASAGHLNA	8	Unmodified						0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	740.368578	739.361301	0.91937	0.00068068	-9.1623	-0.0067835	-8.2429	-0.0061028	740.3619876339536	31.572	0.16894	31.568	31.519	31.688	-0.0044155	561	61	1.2855089	0.035942435	1.2839894	262.24673		7.3323364	-0.0027441	-0.00072197	-0.00075972	NaN	4.9097	118	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9979.7	+		932	8815	574	583							-0.01880472547759382
ASDISELW	8	Unmodified	_ASDISELW_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.435988803	1	920.435989	919.428712	1.0962	0.001009	0.27989	0.00025763	1.3761	0.0012666	920.435852460382	28.507	0.21714	28.499	28.475	28.692	-0.0083485	354	73	1.4090419	0.04280126	1.4075224	286.4208	0	8.700348						342	10	4	NaN	NaN	NaN	0.15767	1	6264	6264		53.324	14.716	1	60290			933	4433	575	584	696	696					-0.03422487127477325
ASDSPLLEL	9	Unmodified	_ASDSPLLEL_					0	0	0		ENST00000481046.1_1_9:104296388-104296490:+|nuORF	ENST00000481046.1_1_9:104296388-104296490:+|nuORF	ENST00000481046.1_1_9:104296388-104296490:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4935036819	1	944.493504	943.486227	2.0784	0.001963	0.72414	0.00068395	2.8025	0.002647	944.4943342217961	25.467	0.26542	25.455	25.334	25.6	-0.012011	312	79	1.433996	0.0462991	1.4324765	291.38364	0	9.407806						369	12	3	NaN	NaN	NaN	0.056143	1	6770	6770		44.302	4.8436	1	50583			934	7202	576	585	697	697					0.012223550780959158
ASELIPNP	8	Unmodified	_ASELIPNP_					0	0	0		ENST00000370069.5_1_20:62219030-62219531:-|nuORF	ENST00000370069.5_1_20:62219030-62219531:-|nuORF	ENST00000370069.5_1_20:62219030-62219531:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4461595588	1	840.44616	839.438883	1.5294	0.0012854	0.48981	0.00041166	2.0192	0.0016971	840.4464929680411	23.826	0.40978	23.813	23.621	24.03	-0.013048	468	106	1.3411216	0.06268823	1.3396021	272.9973	0	12.760742						624	18	2	NaN	NaN	NaN	0.35353	1	5134	5134		38.918	6.4651	1	104490			935	6646	577	586	698	698					0.012741205977590653
ASFALPSC	8	Unmodified	_ASFALPSC_					0	0	0			REV__nc|ENSG00000141971|Q96EY5-2|MVB12A	REV__nc|ENSG00000141971|Q96EY5-2|MVB12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3705517747001	1	795.370552	794.363275	2.2646	0.0018012	-5.671	-0.0045105	-3.4064	-0.0027093	795.3663150294163	25.66	0.16891	25.66	25.612	25.781	0	564	46	1.2837118	0.026958227	1.2837118	261.5498	0	5.4926147						129	8	2	NaN	NaN	NaN	0.62311	1	4676	4676		23.85	3.295	1	13285	+		936	9836	578	587	699	699					-0.04213179854173177
ASFASQGGL	9	Unmodified	_ASFASQGGL_					0	0	0		nc|ENSG00000139154|Q6ZN18-3|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;nc|ENSG00000139154|Q6ZN18|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.20869243505007	2	419.208692	836.402832	0.8483	0.00035561	-6.5492	-0.0027455	-5.701	-0.0023899	419.2055026726754	35.07	0.12066	35.07	34.998	35.119	-4.5776E-05	1473	52	0.7302302	0.03155893	0.7287108	297.30142	0	12.848724						122	6	2	NaN	NaN	NaN	0.63698	1	5089	5089		3.9685	0.39529	1	14325			937	3200	579	588	700	700					-0.02191336579073777
ASFIEVTSLD	10	Unmodified	_ASFIEVTSLD_					0	0	0		ENST00000586185.1_1_17:76615003-76620327:-|nuORF	ENST00000586185.1_1_17:76615003-76620327:-|nuORF	ENST00000586185.1_1_17:76615003-76620327:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2742293113001	2	541.274229	1080.53391	0.69418	0.00037574	-4.4142	-0.0023893	-3.72	-0.0020135	541.2713457397688	33.43	0.096512	33.428	33.404	33.501	-0.0018501	1284	61	0.8468043	0.03687364	0.8452849	343.50348	0	14.957672						141	5	3	NaN	NaN	NaN	0.65442	1	11686	11686		11.17	1.4243	1	11822			938	7699	580	589	701	701					-0.0031399072170188447
ASFKYAVES	9	Unmodified	_ASFKYAVES_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2;nc|ENSG00000164347|Q969S9-5|GFM2;GFM2|p.H539Qfs*7|1|0.21|ENSG00000164347|chr5:74730369-74730370|-/T|frameshift_variant;nc|ENSG00000164347|Q969S9-4|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.25055724975	2	501.250557	1000.48656	1.7462	0.0008753	-4.167	-0.0020887	-2.4208	-0.0012134	501.2487856121016	28.026	0.14477	28.026	28.001	28.146	0	1287	52	0.8449601	0.03135097	0.8449601	343.1004	0	12.730255						123	7	2	NaN	NaN	NaN	0.46215	1	8602	8602		11.17	0.56537	1	11754			939	4318	581	590	702	702					-0.013662252020480992
ASGGGKAQ	8	Unmodified	_ASGGGKAQ_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3420288383	1	675.342029	674.334752	1.1859	0.0008009	-7.2009	-0.0048631	-6.015	-0.0040622	675.3362035796748	28.967	0.048277	28.967	28.967	29.015	0	675	55	1.2170867	0.032479763	1.2170867	248.72389	0	6.6375885						73	3	2	NaN	NaN	NaN	0.84756	1	2706	2706		1.072	0	1	5826.4			940	435	582	591	703	703					-0.015441614390965697
ASGGGKAQ	8	Unmodified						0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.342029	674.334752	1.042	0.00070369	-7.8445	-0.0052977	-6.8025	-0.004594	675.3365343115572	28.99	0.12066	28.982	28.958	29.079	-0.0077229	675	55	1.2170867	0.032479763	1.2155672	248.72389		6.6375885	0.0078213	-0.00021982	-0.00075972	NaN	1.072	99	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6337.1			941	435	582	591							-0.015441614390965697
ASGGRWLF	8	Unmodified	_ASGGRWLF_					0	0	0			REV__ENST00000484848.5_1_10:102266147-102268388:-|nuORF	REV__ENST00000484848.5_1_10:102266147-102268388:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.2350445713	2	447.235045	892.455536	1.5275	0.00068316	-3.3997	-0.0015205	-1.8722	-0.00083732	447.2336542873019	31.355	0.048231	31.35	31.326	31.374	-0.0050716	1455	31	0.7413668	0.018555045	0.73984736	301.52957	0	7.5467224						33	3	2	NaN	NaN	NaN	0.84876	1	5840	5840		0.39566	0	1	2661.6	+		942	12412	583	592	704	704					0.005006662743767265
ASGKSSVF	8	Unmodified	_ASGKSSVF_					0	0	0		tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	tr|U7SU04|U7SU04_FUSNUATPaseAAA-typecoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01265PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4042947441001	1	782.404295	781.397018	1.6713	0.0013076	4.7418	0.00371	6.413	0.0050176	782.408389896283	30.438	0.41016	30.432	30.36	30.77	-0.0057545	519	178	1.310647	0.10600209	1.3091276	267.11295	0	21.60347						784	18	3	NaN	NaN	NaN	0.75561	1	4427	4427		15.175	1.1338	1	303400			943	13873	584	593	705	705					-0.0024243509076313785
ASGPVPLC	8	Unmodified	_ASGPVPLC_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3756371526001	1	743.375637	742.368361	0.81101	0.00060288	1.3323	0.0009904	2.1433	0.0015933	743.3764616342525	33.817	0.26543	33.817	33.721	33.986	0	597	73	1.2639319	0.043200135	1.2639319	257.82593	0	8.812256						390	12	3	NaN	NaN	NaN	0.75682	1	3949	3949		15.013	0	1	45332	+		944	10975	585	594	706	706					-0.013128759915502997
ASGPVPLC	8	Unmodified						0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.375637	742.368361	0.81101	0.00060288	1.3323	0.0009904	2.1433	0.0015933	743.3764616342525	33.817	0.26543	33.817	33.721	33.986	0	597	73	1.2639319	0.043200135	1.2639319	257.82593		8.812256	0.013599	0.00044209	-0.00013985	NaN	15.013	390	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45332	+		945	10975	585	594							-0.013128759915502997
ASGPVPLC	8	Unmodified						0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	743.375637	742.368361	0.97144	0.00072214	0.072392	5.3815E-05	1.0438	0.00077596	743.3754231944973	33.792	0.24134	33.79	33.694	33.935	-0.0018501	594	88	1.265731	0.05220294	1.2642115	258.19293		10.648712	-0.013599	-0.0004945	0.00013985	NaN	15.013	355	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44078	+		946	10975	585	594							-0.013128759915502997
ASGRGCQMRQG	11	Unmodified	_ASGRGCQMRQG_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7638485755	2	575.763849	1149.51314	1.5324	0.00088232	4.5348	0.002611	6.0672	0.0034933	575.7667830721373	20.285	0.26439	20.285	20.189	20.453	0	1212	70	0.8910048	0.042319894	0.8910048	361.16006	0	17.153961						245	12	2	NaN	NaN	NaN	0.7072	1	14776	14776		6.9844	0.73415	1	22386	+		947	8126	586	595	707	707					-0.055631828540299466
ASGRGCQMRQG	11	Unmodified						0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.763849	1149.51314	1.5324	0.00088232	4.5348	0.002611	6.0672	0.0034933	575.7667830721373	20.285	0.26439	20.285	20.189	20.453	0	1212	70	0.8910048	0.042319894	0.8910048	361.16006		17.153961	-0.0048841	-0.001229	0.0081201	NaN	6.9844	245	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22386	+		948	8126	586	595							-0.055631828540299466
ASGRGCQMRQG	11	Unmodified						0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.763849	1149.51314	1.2923	0.00074407	7.0665	0.0040686	8.3588	0.0048127	575.7681915879957	20.309	0.2408	20.295	20.174	20.415	-0.014141	1236	67	0.876284	0.040486515	0.8747646	355.19315		16.410797	0.0048841	0.0016863	-0.0081201	NaN	6.9844	184	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18170	+		949	8126	586	595							-0.055631828540299466
ASIVVLGVL	9	Unmodified	_ASIVVLGVL_					0	0	0			REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.5658807640003	1	870.565881	869.558604	0.38207	0.00033262	0.72995	0.00063547	1.112	0.00096808	870.5661047264257	31.717	0.096588	31.712	31.688	31.785	-0.0044155	345	49	1.4143922	0.028531194	1.4128729	287.75153	0	5.804535						121	5	3	NaN	NaN	NaN	0.056143	1	5520	5520		44.302	0	1	13555	+		950	9451	587	596	708	708					0.11860733942353363
ASIVVLGVL	9	Unmodified						0	0	0			REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	REV__nc|ENSG00000128596|Q96JN2-3|CCDC136	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	870.565881	869.558604	0.38207	0.00033262	0.72995	0.00063547	1.112	0.00096808	870.5661047264257	31.717	0.096588	31.712	31.688	31.785	-0.0044155	345	49	1.4143922	0.028531194	1.4128729	287.75153		5.804535	-0.0027574	0.00031502	0.00013193	NaN	44.302	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13555	+		951	9451	587	596							0.11860733942353363
ASLEEVPFAA	10	Unmodified	_ASLEEVPFAA_					0	0	0		ADCK4|p.W283Lfs*4|1|0.35|ENSG00000123815|chr19:40702645-40702646|-/A|frameshift_variant;nc|ENSG00000123815|Q96D53-2|COQ8B;ENSG00000123815|ENST00000324464|COQ8B	ADCK4|p.W283Lfs*4|1|0.35|ENSG00000123815|chr19:40702645-40702646|-/A|frameshift_variant	ADCK4|p.W283Lfs*4|1|0.35|ENSG00000123815|chr19:40702645-40702646|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.263664625	2	517.263665	1032.51278	1.64	0.00084832	-4.5243	-0.0023403	-2.8843	-0.0014919	517.261570293269	17.138	0.14394	17.124	17.1	17.244	-0.013569	1287	55	0.8449601	0.033207774	0.84344065	342.95602	0	13.478516						110	7	2	NaN	NaN	NaN	0.68669	1	9674	9674		8.962	0	1	12473			952	11	588	597	709	709					-0.00217956030564892
ASLSKTSEYKP	11	Unmodified	_ASLSKTSEYKP_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;nc|ENSG00000162849|Q2KJY2-2|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.2153156933333	3	404.215316	1209.62412	1.0033	0.00040556	-0.55438	-0.00022409	0.44895	0.00018147	404.2148238761265	14.501	0.23995	14.501	14.453	14.693	0	1500	46	0.71351165	0.027882397	0.71351165	433.56274	0	16.942627						231	11	3	NaN	NaN	NaN	0.63477	1	16722	16722		5.9336	0	1	26968			953	4187	589	598	710	710					0.0276905860671377
ASLSSSSF	8	Unmodified	_ASLSSSSF_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.3675748868002	1	785.367575	784.360298	1.5357	0.0012061	5.4987	0.0043185	7.0344	0.0055246	785.3718807660088	26.891	0.096529	26.88	26.856	26.952	-0.010643	522	49	1.3088527	0.02871406	1.3073332	266.72986	0	5.851593						99	5	2	NaN	NaN	NaN	0.84455	1	4465	4465		2.7852	0	1	7498.8	+		954	9371	590	599	711	711					-0.04050731707309296
ASLSSSSF	8	Unmodified						0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.367575	784.360298	1.4941	0.0011734	3.4118	0.0026795	4.9059	0.0038529	785.3707725533916	26.915	0.14477	26.915	26.843	26.988	0	525	46	1.3070582	0.026915193	1.3070582	266.36417		5.485016	0.017781	-0.00090284	-0.00013755	NaN	2.7852	113	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7707.5	+		955	9371	590	599							-0.04050731707309296
ASLSSSSF	8	Unmodified						0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	785.367575	784.360298	1.5357	0.0012061	5.4987	0.0043185	7.0344	0.0055246	785.3718807660088	26.891	0.096529	26.88	26.856	26.952	-0.010643	522	49	1.3088527	0.02871406	1.3073332	266.72986		5.851593	-0.017781	0.00073618	0.00013755	NaN	2.7852	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7498.8	+		956	9371	590	599							-0.04050731707309296
ASMFFTIVF	9	Unmodified	_ASMFFTIVF_					0	0	0			REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7700712713502	2	531.770071	1061.52559	1.5624	0.00083084	-4.3999	-0.0023397	-2.8375	-0.0015089	531.7688979946485	27.422	0.04829	27.422	27.422	27.471	0	1281	55	0.84864825	0.033179045	0.84864825	344.32907	0	13.462006						72	3	2	NaN	NaN	NaN	0.62619	1	11176	11176		4.4131	0.44458	1	8084.2	+		957	11056	591	600	712	712					-0.0027121617201828485
ASMFFTIVF	9	Unmodified						0	0	0			REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.770071	1061.52559	1.5624	0.00083084	-4.3999	-0.0023397	-2.8375	-0.0015089	531.7688979946485	27.422	0.04829	27.422	27.422	27.471	0	1281	55	0.84864825	0.033179045	0.84864825	344.32907		13.462006	-0.0066193	0.0026065	0.00075972	NaN	4.4131	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8084.2	+		958	11056	591	600							-0.0027121617201828485
ASMFFTIVF	9	Unmodified						0	0	0			REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.770071	1061.52559	0.85586	0.00045512	-9.6314	-0.0051217	-8.7756	-0.0046666	532.2655587427612	27.446	0.072371	27.436	27.411	27.484	-0.010126	1281	64	0.84864825	0.038698435	0.8471288	344.3291		15.701447	0.0066193	-0.0029574	-0.00075972	NaN	4.4131	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6698.2	+		959	11056	591	600							-0.0027121617201828485
ASMMVLLFILF	11	Unmodified	_ASMMVLLFILF_					0	0	0			REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.8583633499001	2	642.858363	1283.70217	3.1289	0.0020115	6.5919	0.0042377	9.7209	0.0062491	643.3637722403854	39.668	1.1067	39.673	39.625	40.732	0.0053368	1215	121	0.8891654	0.07360387	0.88764596	359.96753	0	29.797607						3679	47	6	NaN	NaN	NaN	0.76304	1	17672	17672		3.2116	0.61216	1	4702500	+		960	11061	592	601	713	713					0.07167076666746652
ASNGASSS	8	Unmodified	_ASNGASSS_					0	0	0			REV__ENSG00000112561|ENST00000373033|TFEB	REV__ENSG00000112561|ENST00000373033|TFEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	340.64592500275	2	340.645925	679.277297	1.6717	0.00056946	6.3256	0.0021548	7.9973	0.0027242	340.648263132808	36.688	0.14452	36.688	36.591	36.736	0	1527	31	0.69677675	0.018605411	0.69677675	284.73703	0	7.6030884						65	7	2	NaN	NaN	NaN	0.84455	1	2830	2830		2.7852	0	1	4043.8	+		961	9123	593	602	714	714					-0.07517048435317975
ASNGASSS	8	Unmodified						0	0	0			REV__ENSG00000112561|ENST00000373033|TFEB	REV__ENSG00000112561|ENST00000373033|TFEB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	340.645925	679.277297	1.6717	0.00056946	6.3256	0.0021548	7.9973	0.0027242	340.648263132808	36.688	0.14452	36.688	36.591	36.736	0	1527	31	0.69677675	0.018605411	0.69677675	284.73703		7.6030884	0.012215	0.00087544	-0.0001704	NaN	2.7852	65	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043.8	+		962	9123	593	602							-0.07517048435317975
ASNGASSS	8	Unmodified						0	0	0			REV__ENSG00000112561|ENST00000373033|TFEB	REV__ENSG00000112561|ENST00000373033|TFEB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	340.645925	679.277297	2.0244	0.00068959	2.7292	0.00092968	4.7535	0.0016193	340.6476633731908	36.661	0.072094	36.663	36.639	36.711	0.0016747	1524	31	0.698637	0.018599331	0.69711757	285.49725		7.6006165	-0.012215	-0.0015748	0.0001704	NaN	2.7852	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5084.6	+		963	9123	593	602							-0.07517048435317975
ASPDRIPSL	9	Unmodified	_ASPDRIPSL_					0	0	0		ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1	ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant	ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.263998976	2	478.263999	954.513445	1.8799	0.00089909	-2.1772	-0.0010413	-0.29735	-0.00014221	478.2634014556674	16.347	0.2158	16.334	16.262	16.478	-0.012995	1371	85	0.79324204	0.05176294	0.7917226	322.31036	0	21.032318						323	10	3	NaN	NaN	NaN	0.21199	1	7051	7051		24.562	0.71157	1	40539			964	48	594	603	715	715					0.03436883409131042
ASPGAPPA	8	Unmodified	_ASPGAPPA_					0	0	0		nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3409662058	1	667.340966	666.33369	1.432	0.00095561	5.4689	0.0036496	6.9008	0.0046052	667.343929615015	27.495	0.24136	27.495	27.422	27.664	0	705	58	1.1990347	0.034319043	1.1990347	245.0932	0	7.0151367						170	11	2	NaN	NaN	NaN	0.72043	1	2491	2491		17.78	4.0433	1	18649			965	8015	595	604	716	716					-0.012823758080116932
ASPGAPPA	8	Unmodified						0	0	0		nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-2|ATXN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.340966	666.33369	1.2635	0.0008432	6.2952	0.0042011	7.5588	0.0050443	667.3451677903373	27.494	0.2413	27.484	27.46	27.702	-0.009552	702	76	1.2008407	0.045166373	1.1993213	245.46237		9.232422	-0.0051656	0.00026069	0.00014332	NaN	17.78	188	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20254			966	8015	595	604							-0.012823758080116932
ASPRAVFP	8	Unmodified	_ASPRAVFP_					0	0	0		ITIH6|p.W491R|1|0.12|ENSG00000102313|chrX:54758603-54758603|A/T|missense_variant	ITIH6|p.W491R|1|0.12|ENSG00000102313|chrX:54758603-54758603|A/T|missense_variant	ITIH6|p.W491R|1|0.12|ENSG00000102313|chrX:54758603-54758603|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4675637029001	1	844.467564	843.460287	0.71811	0.00060642	-0.84932	-0.00071722	-0.1312	-0.0001108	844.4668537380919	20.911	0.12037	20.897	20.873	20.993	-0.014086	390	55	1.3876231	0.032152176	1.3861036	282.4414	0	6.5443726						96	6	2	NaN	NaN	NaN	0.78967	1	5177	5177		10.605	0	1	9930.6			967	7827	596	605	717	717					0.03229550417131577
ASQGPSTSITL	11	Unmodified	_ASQGPSTSITL_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2773033165	2	531.277303	1060.54005	2.1664	0.0011509	6.375	0.0033869	8.5414	0.0045378	531.2806940812892	18.94	0.19198	18.94	18.868	19.06	0	1191	169	0.90387505	0.10310125	0.90387505	366.741	0	41.83261						483	9	3	NaN	NaN	NaN	0.37105	1	11133	11133		23.086	3.7494	1	61315	+		968	12714	597	606	718	718					0.012205275098040147
ASQSSSVS	8	Unmodified	_ASQSSSVS_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.3420884178001	1	752.342088	751.334812	1.3282	0.00099924	4.8881	0.0036775	6.2163	0.0046768	752.3460568447925	27.229	0.14478	27.229	27.181	27.326	0	603	52	1.2603331	0.030591846	1.2603331	257.03616	0	6.2389984						157	7	2	NaN	NaN	NaN	0.83582	1	4085	4085		4.4131	0	1	18492			969	1664	598	607	719	719					-0.05080206229740725
ASRAALAGG	9	Unmodified	_ASRAALAGG_					0	0	0		ENST00000409031.5_3_2:130939329-130940025:-|nuORF	ENST00000409031.5_3_2:130939329-130940025:-|nuORF	ENST00000409031.5_3_2:130939329-130940025:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.4264271697	1	773.426427	772.419151	1.4505	0.0011218	5.5507	0.0042931	7.0012	0.0054149	773.4304556148251	20.862	0.096447	20.862	20.838	20.935	0	513	70	1.3142352	0.041261077	1.3142352	267.89795	0	8.410767						129	5	3	NaN	NaN	NaN	0.44082	1	4394	4394		12.049	0.50025	1	12250			970	6852	599	608	720	720					0.02383789377654466
ASRNLVLW	8	Unmodified	_ASRNLVLW_					0	0	0		ENST00000472593.1_1_3:183520964-183521276:+|nuORF	ENST00000472593.1_1_3:183520964-183521276:+|nuORF	ENST00000472593.1_1_3:183520964-183521276:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5468766564001	1	958.546877	957.5396	0.94511	0.00090593	7.1998	0.0069014	8.1449	0.0078073	958.5557195320814	31.67	0.048277	31.67	31.646	31.694	0	258	43	1.4660252	0.024890542	1.4660252	297.82895	0	5.05661						53	3	2	NaN	NaN	NaN	0.82212	1	7283	7283		6.2502	0.15988	1	3310.1			971	7164	600	609	721	721					0.05913197371273782
ASSEEMRESF	10	Unmodified	_ASSEEMRESF_					0	0	0			REV__CARM1|p.T141M|1|0.15|ENSG00000142453|chr19:10908114-10908114|C/T|missense_variant	REV__CARM1|p.T141M|1|0.15|ENSG00000142453|chr19:10908114-10908114|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.74805273805	2	586.748053	1171.48155	1.3853	0.00081281	0.79762	0.000468	2.1829	0.0012808	586.7483971688371	34.879	0.096539	34.879	34.782	34.879	0	1209	46	0.892844	0.02758503	0.892844	361.82513	0	11.178833						90	5	2	NaN	NaN	NaN	0.65442	1	15525	15525		11.17	0	1	8885.7	+		972	8175	601	610	722	722					-0.09732897126991702
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5353089171	1	997.535309	996.528032	1.8062	0.0018018	-0.29734	-0.00029661	1.5089	0.0015052	997.5353026171414	34.324	0.16877	34.324	34.276	34.445	0	198	79	1.5015416	0.0461272	1.5015416	304.87497	0	9.365723						309	8	3	NaN	NaN	NaN	0.021105	1	8449	8449		70.6	23.464	1	54771			973	3622	602	611	723	723					0.029629555572796562
ASSFVFLNL	9	Unmodified						0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	997.535309	996.528032	1.4021	0.0013987	0.31846	0.00031768	1.7206	0.0017163	997.53597684908	34.323	0.14449	34.322	34.274	34.418	-0.0012474	195	82	1.5033154	0.04789877	1.501796	305.23514		9.725433	-0.0012441	0.00034173	0.0001272	NaN	70.6	331	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54033			974	3622	602	611							0.029629555572796562
ASSSGTTI	8	Unmodified	_ASSSGTTI_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3519248226002	1	723.351925	722.344648	1.6668	0.0012057	7.9175	0.0057272	9.5843	0.0069328	723.3577726099223	23.634	0.16865	23.621	23.621	23.789	-0.013048	591	64	1.26753	0.037785888	1.2660105	258.6898	0	7.7117157						155	8	2	NaN	NaN	NaN	0.84455	1	3558	3558		2.7852	1.5433	1	16618	+		975	8512	603	612	724	724					-0.02763018224368352
ASSSGTTI	8	Unmodified						0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	723.351925	722.344648	1.6668	0.0012057	7.9175	0.0057272	9.5843	0.0069328	723.3577726099223	23.634	0.16865	23.621	23.621	23.789	-0.013048	591	64	1.26753	0.037785888	1.2660105	258.6898		7.7117157	-0.0066443	0.00021987	-0.00075972	NaN	2.7852	155	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16618	+		976	8512	603	612							-0.02763018224368352
ASVALHRL	8	Unmodified	_ASVALHRL_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.76396918625	2	433.763969	865.513385	1.7754	0.0007701	-2.8171	-0.0012219	-1.0417	-0.00045185	433.7628053284119	13.565	0.19214	13.565	13.517	13.709	0	1491	46	0.7190863	0.027867317	0.7190863	292.6055	0	11.339569						213	9	3	NaN	NaN	NaN	0.72013	1	5612	5612		17.799	0	1	33747			977	5851	604	613	725	725					0.07524928199791248
ASVLYLSGE	9	Unmodified	_ASVLYLSGE_					0	0	0		ENST00000529192.1_3_11:46638262-46638355:-|nuORF	ENST00000529192.1_3_11:46638262-46638355:-|nuORF	ENST00000529192.1_3_11:46638262-46638355:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.74510773110006	2	469.745108	937.475663	0.5306	0.00024925	3.302	0.0015511	3.8326	0.0018004	469.74659442220786	31.018	0.14486	31.018	30.946	31.091	0	1368	37	0.7950918	0.022196114	0.7950918	323.14526	0	9.021057						136	7	3	NaN	NaN	NaN	0.31737	1	6769	6769		17.799	0	1	15983			978	7441	605	614	726	726					0.0044237242368581065
ASVLYLSGE	9	Unmodified						0	0	0		ENST00000529192.1_3_11:46638262-46638355:-|nuORF	ENST00000529192.1_3_11:46638262-46638355:-|nuORF	ENST00000529192.1_3_11:46638262-46638355:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	469.745108	937.475663	0.11674	5.484E-05	2.0573	0.00096643	2.1741	0.0010213	469.7459869575355	30.993	0.21724	30.988	30.94	31.157	-0.0050716	1362	43	0.79879075	0.025887072	0.7972713	324.64862		10.521149	-0.015129	-0.00067091	0.0010898	NaN	17.799	185	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26031			979	7441	605	614							0.0044237242368581065
ASWAVGPVPP	10	Unmodified	_ASWAVGPVPP_					0	0	0		ENST00000563715.1_1_22:44208349-44208478:+|nuORF	ENST00000563715.1_1_22:44208349-44208478:+|nuORF	ENST00000563715.1_1_22:44208349-44208478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5199932039001	1	980.519993	979.512717	1.147	0.0011247	-8.6608	-0.0084921	-7.5138	-0.0073674	980.5131083509674	37.65	0.096348	37.65	37.626	37.723	0	249	40	1.4713576	0.023101568	1.4713576	298.81717	0	4.6917114						83	5	2	NaN	NaN	NaN	0.64889	1	7866	7866		11.548	1.4969	1	5685.1			980	7615	606	615	727	727					0.022140887600926362
ATAASHAG	8	Unmodified	_ATAASHAG_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3263787741	1	685.326379	684.319102	2.3628	0.0016193	-11.324	-0.0077608	-8.9614	-0.0061415	685.3185011259733	26.408	0.2896	26.408	26.36	26.65	0	669	130	1.2206948	0.07760334	1.2206948	249.38887	0	15.854416						533	13	3	NaN	NaN	NaN	0.80071	1	2926	2926		9.1232	0.83292	1	122720	+		981	10649	607	616	728	728					-0.03568447956149612
ATAASHAG	8	Unmodified						0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	685.326379	684.319102	2.3628	0.0016193	-11.324	-0.0077608	-8.9614	-0.0061415	685.3185011259733	26.408	0.2896	26.408	26.36	26.65	0	669	130	1.2206948	0.07760334	1.2206948	249.38887		15.854416	0.0057055	-0.00021261	-0.00014216	NaN	9.1232	533	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122720	+		982	10649	607	616							-0.03568447956149612
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.25089160075	2	444.250892	886.48723	1.2833	0.0005701	-1.7556	-0.00077992	-0.47229	-0.00020982	444.25029730496885	16.877	0.14384	16.877	16.83	16.973	0	1380	49	0.7876915	0.029604435	0.7876915	320.40347	0	12.041992						102	7	2	NaN	NaN	NaN	0.49999	1	5897	5897		9.6116	2.024	1	8638.1			983	4822	608	617	729	729					0.03944614237661881
ATADLALGR	9	Unmodified	_ATADLALGR_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160056-49160527:-|nuORF	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.25089160075	2	444.250892	886.48723	1.4984	0.00066565	-1.8378	-0.00081643	-0.3394	-0.00015078	444.25027247064685	16.85	0.11983	16.837	16.813	16.933	-0.013294	1377	43	0.7895419	0.02590108	0.78802246	321.15616	0	10.5355835						99	6	2	NaN	NaN	NaN	0.048656	1	5776	5776		47.482	8.0228	1	9452.8			984	4822	608	617	730	730					0.03944614237661881
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC-VMP1|14|fusion;CLTC-VMP1|18|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.28526573435005	2	486.285266	970.555979	1.9639	0.00095503	-3.4807	-0.0016926	-1.5168	-0.00073758	486.2835937327315	17.093	0.072041	17.093	17.045	17.117	0	1320	55	0.824661	0.033225775	0.824661	334.99786	0	13.497131						119	4	4	NaN	NaN	NaN	0.14619	1	7634	7634		40.154	14.353	1	23205			985	170;3312	609	618	731	731					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;CLTC-VMP1|14|fusion;CLTC-VMP1|18|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.28526573435005	2	486.285266	970.555979	1.7916	0.00087125	-1.7919	-0.00087139	-0.00029483	-1.4337E-07	486.28441605251345	17.09	0.144	17.077	17.053	17.197	-0.013294	1317	55	0.8265074	0.03322214	0.82498795	335.74792	0	13.4956665						185	7	3	NaN	NaN	NaN	0.14619	1	7490	7490		40.154	11.258	1	34254			986	170;3312	609	618	732	732					0.06952278537380607
ATAVDPEWG	9	Unmodified	_ATAVDPEWG_					0	0	0			REV__ENST00000584445.5_1_17:80438345-80438627:+|nuORF	REV__ENST00000584445.5_1_17:80438345-80438627:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.21925712135	2	473.219257	944.423961	1.1691	0.00055324	-4.5063	-0.0021324	-3.3372	-0.0015792	473.2184597093466	26.07	0.14483	26.059	26.011	26.156	-0.011137	1323	106	0.8228144	0.06468612	0.82129496	334.37692	0	26.287292						283	7	3	NaN	NaN	NaN	0.49672	1	6784	6784		9.746	0	1	37344	+		987	12875	610	619	733	733					-0.0504737127023418
ATIYPVLPK	9	Unmodified	_ATIYPVLPK_					0	0	0		ENSG00000138074|ENST00000310574|SLC5A6;ENST00000461757.1_1_2:27423306-27424138:-|nuORF	ENSG00000138074|ENST00000310574|SLC5A6	ENSG00000138074|ENST00000310574|SLC5A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.3051355092	2	501.305136	1000.59572	1.8676	0.00093622	-7.0218	-0.0035201	-5.1543	-0.0025839	501.3013289485528	22.814	0.072338	22.814	22.79	22.863	0	1272	40	0.854179	0.02396655	0.854179	346.8433	0	9.73172						67	4	2	NaN	NaN	NaN	0.66529	1	8631	8631		2.1763	0.73677	1	8364.3			988	3134	611	620	734	734					0.09544405488088614
ATLDGLIG	8	Unmodified	_ATLDGLIG_					0	0	0			REV__ENSG00000120500|ENST00000307959|ARR3	REV__ENSG00000120500|ENST00000307959|ARR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.4246958352	1	759.424696	758.417419	0.31681	0.00024059	6.2732	0.004764	6.59	0.0050046	759.429340083452	49.743	0.35936	49.744	49.649	50.008	0.0017853	495	742	1.3249949	0.44166505	1.3234755	270.17825	0	90.05943						2579	16	4	NaN	NaN	NaN	0.8439	1	4119	4119		3.1533	1.7138	1	392770	+		989	9314	612	621	735	735					0.028547355690420773
ATLSALAAL	9	Unmodified	_ATLSALAAL_					0	0	0			REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	830.4981951292999	1	830.498195	829.490919	1.6289	0.0013528	0.28243	0.00023456	1.9113	0.0015873	830.4984732821633	27.711	0.048256	27.702	27.677	27.726	-0.009552	480	40	1.3339561	0.023291588	1.3324367	271.59116	0	4.7421265						59	3	2	NaN	NaN	NaN	0.39244	1	5016	5016		14.042	3.4366	1	3702.4	+		990	12482	613	622	736	736					0.06935284011501608
ATLSALAAL	9	Unmodified						0	0	0			REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	REV__ENST00000494142.1_1_19:54677740-54682918:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	830.498195	829.490919	1.6289	0.0013528	0.28243	0.00023456	1.9113	0.0015873	830.4984732821633	27.711	0.048256	27.702	27.677	27.726	-0.009552	480	40	1.3339561	0.023291588	1.3324367	271.59116		4.7421265	0.0068869	0.00067087	-0.0016556	NaN	14.042	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3702.4	+		991	12482	613	622							0.06935284011501608
ATLYGAVG	8	Unmodified	_ATLYGAVG_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.20287877565005	2	376.202879	750.391205	1.7065	0.00064201	7.1594	0.0026934	8.8659	0.0033354	376.20577813274053	28.774	0.048231	28.774	28.75	28.798	0	1461	37	0.7376554	0.022270858	0.7376554	300.8789	0	9.083954						40	3	2	NaN	NaN	NaN	0.84692	1	4062	4062		1.4396	0	1	2442	+		992	9722	614	623	737	737					0.00602466397583612
ATNFLLEMT	9	Unmodified	_ATNFLLEMT_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5128589155	1	1039.51286	1038.50558	1.0049	0.0010446	0.47877	0.00049769	1.4837	0.0015423	1039.5134373495746	30.221	0.19303	30.214	30.166	30.359	-0.0064106	144	100	1.533442	0.058449984	1.5319226	311.1803	0	11.861206						440	9	3	NaN	NaN	NaN	0.10363	1	9930	9930		35.296	9.1815	1	52130			993	6112	615	624	738	738					-0.012130119026551256
ATPHFTSVS	9	Unmodified	_ATPHFTSVS_					0	0	0			REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.73507436105	2	473.735074	945.455596	1.3036	0.00061754	-0.71461	-0.00033854	0.58895	0.00027901	473.7347624088034	16.035	0.1918	16.023	15.975	16.166	-0.012611	1353	43	0.8043377	0.02588147	0.80281824	326.8632	0	10.517578						134	9	2	NaN	NaN	NaN	0.36492	1	6822	6822		15.175	3.6269	1	13611	+		994	12529	616	625	739	739					-0.019313785162808017
ATPHFTSVS	9	Unmodified						0	0	0			REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.735074	945.455596	1.4224	0.00067384	-2.1726	-0.0010293	-0.75023	-0.00035541	473.7337672604571	16.014	0.095984	16.014	15.99	16.086	0	1356	43	0.8024889	0.02588147	0.8024889	326.11188		10.517609	-0.0043469	-0.00076495	-0.00016467	NaN	15.175	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10348	+		995	12529	616	625							-0.019313785162808017
ATPHFTSVS	9	Unmodified						0	0	0			REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.735074	945.455596	1.3036	0.00061754	-0.71461	-0.00033854	0.58895	0.00027901	473.7347624088034	16.035	0.1918	16.023	15.975	16.166	-0.012611	1353	43	0.8043377	0.02588147	0.80281824	326.8632		10.517578	0.0043469	0.00061648	0.00016467	NaN	15.175	134	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13611	+		996	12529	616	625							-0.019313785162808017
ATQGLGGF	8	Unmodified	_ATQGLGGF_					0	0	0		ENST00000371132.8_2_20:57226772-57226844:+|nuORF	ENST00000371132.8_2_20:57226772-57226844:+|nuORF	ENST00000371132.8_2_20:57226772-57226844:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.3780799936002	1	750.37808	749.370804	0.93516	0.00070172	7.8941	0.0059235	8.8292	0.0066253	750.3821631371395	33.792	0.16893	33.79	33.742	33.911	-0.0018501	525	70	1.3070582	0.04128754	1.3055388	266.57794	0	8.420685						204	8	2	NaN	NaN	NaN	0.7718	1	3964	3964		13.003	0	1	27247			997	6654	617	626	740	740					-0.013907042622236077
ATQGLGGF	8	Unmodified						0	0	0		ENST00000371132.8_2_20:57226772-57226844:+|nuORF	ENST00000371132.8_2_20:57226772-57226844:+|nuORF	ENST00000371132.8_2_20:57226772-57226844:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	750.37808	749.370804	0.80143	0.00060137	8.5225	0.0063951	9.324	0.0069965	750.382676876592	33.793	0.19302	33.793	33.745	33.938	0	528	64	1.3052634	0.037697315	1.3052634	266.21188		7.6884766	0.0015406	0.00023314	-0.00013764	NaN	13.003	251	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27841			998	6654	617	626							-0.013907042622236077
ATSDAYFPT	9	Unmodified	_ATSDAYFPT_					0	0	0			REV__nc|ENSG00000104936|Q09013-12|DMPK	REV__nc|ENSG00000104936|Q09013-12|DMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.71908994584993	2	486.71909	971.423627	2.2356	0.0010881	-0.04001	-1.9473E-05	2.1956	0.0010687	486.7199623615291	25.588	0.096497	25.576	25.552	25.648	-0.0116	1368	37	0.7950918	0.022196114	0.79357237	322.9821	0	9.0164795						61	5	2	NaN	NaN	NaN	0.61413	1	7497	7497		4.9097	0	1	6727.2	+		999	8943	618	627	741	741					-0.06322790990100202
ATSDAYFPT	9	Unmodified						0	0	0			REV__nc|ENSG00000104936|Q09013-12|DMPK	REV__nc|ENSG00000104936|Q09013-12|DMPK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.71909	971.423627	2.2356	0.0010881	-0.04001	-1.9473E-05	2.1956	0.0010687	486.7199623615291	25.588	0.096497	25.576	25.552	25.648	-0.0116	1368	37	0.7950918	0.022196114	0.79357237	322.9821		9.0164795	-0.0058899	-0.00071201	-0.00075972	NaN	4.9097	61	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6727.2	+		1000	8943	618	627							-0.06322790990100202
ATSDRYYKL	9	Unmodified	_ATSDRYYKL_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.86098429756663	3	372.860984	1115.56112	1.9317	0.00072027	-2.5265	-0.00094205	-0.5948	-0.00022178	372.86075278050095	14.213	0.095811	14.201	14.177	14.273	-0.011218	1482	31	0.72465914	0.018573165	0.7231397	440.75436	0	11.2966						50	5	2	NaN	NaN	NaN	0.51576	1	13110	13110		5.4499	0.83248	1	4645.2	+		1001	8788	619	628	742	742					0.007965376093125087
ATYWAARIL	9	Unmodified	_ATYWAARIL_					0	0	0			REV__ENSG00000165678|ENST00000372134|GHITM	REV__ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.79800896885	2	532.798009	1063.58147	0.71734	0.0003822	-3.1404	-0.0016732	-2.4231	-0.001291	533.2959140741863	28.604	0.12063	28.596	28.523	28.644	-0.0083504	1236	46	0.876284	0.027608931	0.8747646	355.53317	0	11.201721						104	6	2	NaN	NaN	NaN	0.55027	1	11031	11031		7.5404	0	1	12854	+		1002	10391	620	629	743	743					0.052217530597772566
ATYWAARIL	9	Unmodified						0	0	0			REV__ENSG00000165678|ENST00000372134|GHITM	REV__ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.798009	1063.58147	1.84	0.00098036	-0.73091	-0.00038943	1.1091	0.00059093	532.7978538900448	28.532	0.096548	28.532	28.508	28.605	0	1236	37	0.876284	0.022093058	0.876284	355.53314		8.963806	-0.031654	0.0012989	0.00075972	NaN	7.5404	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6493.1	+		1003	10391	620	629							0.052217530597772566
ATYWAARIL	9	Unmodified						0	0	0			REV__ENSG00000165678|ENST00000372134|GHITM	REV__ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.798009	1063.58147	0.71734	0.0003822	-3.1404	-0.0016732	-2.4231	-0.001291	533.2959140741863	28.604	0.12063	28.596	28.523	28.644	-0.0083504	1236	46	0.876284	0.027608931	0.8747646	355.53317		11.201721	0.031654	-0.0012687	-0.00075972	NaN	7.5404	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12854	+		1004	10391	620	629							0.052217530597772566
AVAAKRLG	8	Unmodified	_AVAAKRLG_					0	0	0		sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4991981823002	1	785.499198	784.491922	1.6937	0.0013304	-0.38675	-0.00030379	1.307	0.0010266	785.4990550637064	44.877	0.047874	44.889	44.889	44.937	0.011646	597	25	1.2639319	0.014393806	1.2624124	257.57477	0	2.933319						37	3	2	NaN	NaN	NaN	0.84727	1	4475	4475		1.2418	0	1	1918.4			1005	13683	621	630	744	744					0.09105543171096997
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;nc|ENSG00000089597|Q14697-3|GANAB;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.77486822355	2	442.774868	883.535184	1.882	0.00083329	-2.6678	-0.0011812	-0.78582	-0.00034794	442.77362809993144	11.332	0.28792	11.332	11.236	11.524	0	1341	40	0.8117308	0.02402109	0.8117308	330.19858	0	9.771362						226	13	3	NaN	NaN	NaN	0.012648	1	5849	5849		84.879	6.4809	1	51218			1006	1039	622	631	745	745					0.08875732948365567
AVAAVAARR	9	Unmodified						0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;nc|ENSG00000089597|Q14697-3|GANAB;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	442.774868	883.535184	1.1826	0.00052362	-1.1939	-0.00052861	-0.011281	-4.9948E-06	442.77429312021496	11.31	0.31199	11.302	11.23	11.542	-0.0075302	1338	40	0.81357855	0.02402109	0.8120591	330.95023		9.771362	-0.014743	0.0007191	0.00016417	NaN	84.879	313	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70891			1007	1039	622	631							0.08875732948365567
AVAAVARAR	9	Unmodified	_AVAAVARAR_					0	0	0			REV__ENST00000358154.7_1_16:21610933-21611029:+|nuORF	REV__ENST00000358154.7_1_16:21610933-21611029:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.77486822355	2	442.774868	883.535184	1.1826	0.00052362	-1.1939	-0.00052861	-0.011281	-4.9948E-06	442.77429312021496	11.31	0.31199	11.302	11.23	11.542	-0.0075302	1338	40	0.81357855	0.02402109	0.8120591	330.95023	0	9.771362						313	14	3	NaN	NaN	NaN	0.025843	1	5729	5729		64.55	5.9508	1	70891	+		1008	11825	623	632	746	746					0.08875732948365567
AVAPCGPC	8	Unmodified	_AVAPCGPC_					0	0	0			REV__ENST00000427034.1_1_22:38382230-38422155:+|nuORF	REV__ENST00000427034.1_1_22:38382230-38422155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.3058430279	1	717.305843	716.298567	1.3133	0.000942	-4.1706	-0.0029916	-2.8573	-0.0020496	717.3037992121833	22.091	0.048193	22.077	22.053	22.101	-0.013731	657	46	1.2279087	0.027044892	1.2263893	250.64294	0	5.520447						61	3	2	NaN	NaN	NaN	0.83849	1	3463	3463		4.0537	0	1	6227.8	+		1009	12134	624	633	747	747					-0.0709307793182461
AVAPCGPC	8	Unmodified						0	0	0			REV__ENST00000427034.1_1_22:38382230-38422155:+|nuORF	REV__ENST00000427034.1_1_22:38382230-38422155:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.305843	716.298567	1.3133	0.000942	-4.1706	-0.0029916	-2.8573	-0.0020496	717.3037992121833	22.091	0.048193	22.077	22.053	22.101	-0.013731	657	46	1.2279087	0.027044892	1.2263893	250.64294		5.520447	0.0050188	0.00054786	-0.00075972	NaN	4.0537	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6227.8	+		1010	12134	624	633							-0.0709307793182461
AVASVYREI	9	Unmodified	_AVASVYREI_					0	0	0		ENST00000417856.5_1_11:66034501-66034906:+|nuORF	ENST00000417856.5_1_11:66034501-66034906:+|nuORF	ENST00000417856.5_1_11:66034501-66034906:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2796490402	2	504.279649	1006.54475	2.1945	0.0011066	3.7387	0.0018853	5.9331	0.002992	504.2823322525762	17.981	0.071951	17.981	17.957	18.029	0	1308	37	0.83204526	0.022148132	0.83204526	337.82864	0	8.992615						45	4	2	NaN	NaN	NaN	0.25448	1	8852	8852		21.835	5.2508	1	3763.6			1011	6892	625	634	748	748					0.04173456443231771
AVATTSIT	8	Unmodified	_AVATTSIT_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.4196104572999	1	763.41961	762.412334	1.3512	0.0010315	-9.9224	-0.007575	-8.5713	-0.0065435	763.4125236047529	32.563	0.16893	32.563	32.514	32.683	0	576	40	1.2765218	0.023371339	1.2765218	260.27	0	4.7651978						125	8	2	NaN	NaN	NaN	0.84207	1	4245	4245		3.5732	0	1	9743.7			1012	5207	626	635	749	749					0.02162431706415191
AVATTTSG	8	Unmodified	_AVATTTSG_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.3570102005001	1	707.35701	706.349734	1.4938	0.0010566	5.8769	0.004157	7.3706	0.0052137	707.3611524696146	26.287	0.26539	26.276	26.228	26.493	-0.011137	624	112	1.247731	0.066696286	1.2462115	254.75636	0	13.617767						432	12	3	NaN	NaN	NaN	0.8439	1	3279	3279		3.1533	0	1	89483	+		1013	8216	627	636	750	750					-0.015187143617481524
AVATTTSG	8	Unmodified						0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	707.35701	706.349734	1.7955	0.00127	4.7226	0.0033405	6.518	0.0046106	707.3605283459748	26.288	0.26546	26.288	26.215	26.481	0	627	85	1.24593	0.05045402	1.24593	254.38863		10.301468	0.005678	-0.00038272	-0.00014081	NaN	3.1533	476	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93041	+		1014	8216	627	636							-0.015187143617481524
AVATTTSG	8	Unmodified						0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	707.35701	706.349734	1.4938	0.0010566	5.8769	0.004157	7.3706	0.0052137	707.3611524696146	26.287	0.26539	26.276	26.228	26.493	-0.011137	624	112	1.247731	0.066696286	1.2462115	254.75636		13.617767	-0.005678	0.00043377	0.00014081	NaN	3.1533	432	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89483	+		1015	8216	627	636							-0.015187143617481524
AVEEHEVAQV	10	Unmodified	_AVEEHEVAQV_					0	0	0			REV__TMCO3|p.I198*|1|0.31|ENSG00000150403|chr13:113498489-113498489|A/-|frameshift_variant	REV__TMCO3|p.I198*|1|0.31|ENSG00000150403|chr13:113498489-113498489|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.77492780305	2	555.774928	1109.5353	0.81765	0.00045443	2.1261	0.0011816	2.9438	0.0016361	555.776100100905	31.718	0.16897	31.718	31.646	31.815	0	1227	55	0.88180584	0.033132493	0.88180584	357.58398	0	13.435638						278	8	4	NaN	NaN	NaN	0.22448	1	13250	13250		33.425	1.7499	1	55462	+		1016	10009	628	637	751	751					-0.015083566329622045
AVEEHEVAQV	10	Unmodified						0	0	0			REV__TMCO3|p.I198*|1|0.31|ENSG00000150403|chr13:113498489-113498489|A/-|frameshift_variant	REV__TMCO3|p.I198*|1|0.31|ENSG00000150403|chr13:113498489-113498489|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.774928	1109.5353	0.81765	0.00045443	2.1261	0.0011816	2.9438	0.0016361	555.776100100905	31.718	0.16897	31.718	31.646	31.815	0	1227	55	0.88180584	0.033132493	0.88180584	357.58398		13.435638	0.0027574	-0.00015854	0.00075972	NaN	33.425	278	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55462	+		1017	10009	628	637							-0.015083566329622045
AVETLSPDWEF	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AVETLSPDWEF_					1	0	0		ENSG00000136051|ENST00000332180|WASHC4;ENST00000547404.1_1_12:105501575-105508004:+|nuORF;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3088004101501	2	668.3088	1334.60305	0.73248	0.00048952	-4.2958	-0.0028709	-3.5633	-0.0023814	668.3059734933213	38.972	0.048054	38.972	38.972	39.02	0	1107	49	0.9552588	0.029311538	0.9552588	386.56763	0	11.861603						59	3	2	NaN	NaN	NaN	0.085722	1	19320	19320		40.957	31.345	1	4755.9			1018	2989	629	638	752	752					-0.050869514928081117
AVFHMVKLK	9	Unmodified	_AVFHMVKLK_					0	0	0			REV__ENSG00000187601|ENST00000342972|MAGEH1	REV__ENSG00000187601|ENST00000342972|MAGEH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.21604536896666	3	358.216045	1071.62631	1.8635	0.00066754	3.1824	0.00114	5.0459	0.0018075	358.21711631090193	22.79	0.096432	22.79	22.766	22.863	0	1422	37	0.7617651	0.022237062	0.7617651	463.55438	0	13.53183						73	5	2	NaN	NaN	NaN	0.67989	1	11640	11640		0.38509	0.052546	1	9767.3	+		1019	11027	630	639	753	753					0.09335860601481727
AVFHMVKLK	9	Unmodified						0	0	0			REV__ENSG00000187601|ENST00000342972|MAGEH1	REV__ENSG00000187601|ENST00000342972|MAGEH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	358.216045	1071.62631	1.8635	0.00066754	3.1824	0.00114	5.0459	0.0018075	358.21711631090193	22.79	0.096432	22.79	22.766	22.863	0	1422	37	0.7617651	0.022237062	0.7617651	463.55438		13.53183	-0.029021	-0.00023539	0.00075972	NaN	0.38509	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9767.3	+		1020	11027	630	639							0.09335860601481727
AVFHMVKLK	9	Unmodified						0	0	0			REV__ENSG00000187601|ENST00000342972|MAGEH1	REV__ENSG00000187601|ENST00000342972|MAGEH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	358.216045	1071.62631	1.8674	0.00066894	3.6589	0.0013107	5.5263	0.0019796	358.21731288419244	22.862	0.072309	22.848	22.824	22.896	-0.01354	1422	37	0.7617651	0.022239447	0.7602457	463.55438		13.533295	0.029021	0.00027671	-0.00075972	NaN	0.38509	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9374.4	+		1021	11027	630	639							0.09335860601481727
AVFVCSGL	8	Unmodified	_AVFVCSGL_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.4069372810001	1	795.406937	794.399661	1.3909	0.0011063	-4.8993	-0.0038969	-3.5084	-0.0027906	795.4042643379265	26.794	0.096535	26.783	26.759	26.856	-0.010645	495	76	1.3249949	0.044834614	1.3234755	269.96082	0	9.134827						127	5	2	NaN	NaN	NaN	0.80071	1	4596	4596		9.1232	0	1	12969			1022	6301	631	640	754	754					-0.005763029574609391
AVFVCSGL	8	Unmodified						0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.406937	794.399661	1.6322	0.0012983	-4.287	-0.0034099	-2.6548	-0.0021117	795.4036009467209	26.795	0.1211	26.795	26.77	26.891	0	498	91	1.3232021	0.05381584	1.3232021	269.59552		10.964722	0.0057404	0.00023152	-0.00013669	NaN	9.1232	191	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16937			1023	6301	631	640							-0.005763029574609391
AVGDTEISI	9	Unmodified	_AVGDTEISI_					0	0	0			REV__ENSG00000152315|ENST00000282146|KCNK13	REV__ENSG00000152315|ENST00000282146|KCNK13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4622035535002	1	904.462204	903.454927	1.6832	0.0015224	-2.1067	-0.0019054	-0.42346	-0.000383	904.4606958488001	22.066	0.16858	22.053	21.956	22.125	-0.013731	381	64	1.3929803	0.037500978	1.3914609	283.22977	0	7.624939						176	8	3	NaN	NaN	NaN	0.094712	1	6017	6017		36.586	0	1	16246	+		1024	10049	632	641	755	755					-0.0006621795597538949
AVGPEDVAL	9	Unmodified	_AVGPEDVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.4567242451	1	870.456724	869.449448	1.409	0.0012265	0.22043	0.00019187	1.6294	0.0014184	870.456767459885	23.802	0.14461	23.789	23.717	23.861	-0.013048	459	55	1.3464937	0.032227635	1.3449743	273.93842	0	6.556549						208	7	3	NaN	NaN	NaN	0.062072	1	5517	5517		41.785	5.198	1	27130			1025	5207	633	642	756	756					0.009501032521825437
AVGPVGAGE	9	Unmodified	_AVGPVGAGE_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;OBSCN-KRT17|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3886446799002	1	756.388645	755.381368	1.2789	0.00096732	4.8275	0.0036514	6.1063	0.0046188	756.3919736915925	29.666	0.19303	29.659	29.61	29.803	-0.0070648	528	70	1.3052634	0.04128754	1.303744	266.17386	0	8.419464						259	9	3	NaN	NaN	NaN	0.60063	1	4085	4085		5.4659	0	1	32192			1026	3841	634	643	757	757					-0.006107216078021338
AVGSLLPAII	10	Unmodified	_AVGSLLPAII_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.30513550919994	2	477.305136	952.595718	1.2352	0.00058959	-1.2393	-0.00059152	-0.0040597	-1.9377E-06	477.30421335108736	24.188	0.12069	24.188	24.14	24.261	0	1338	34	0.81357855	0.020325482	0.81357855	330.58295	0	8.258911						111	6	3	NaN	NaN	NaN	0.65442	1	7158	7158		11.17	0	1	15051	+		1027	9638	635	644	758	758					0.11752405488073236
AVHSVAAL	8	Unmodified	_AVHSVAAL_					0	0	0			REV__ENST00000457861.1_1_7:935511-935808:+|nuORF	REV__ENST00000457861.1_1_7:935511-935808:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4410146014001	1	767.441015	766.433738	1.548	0.001188	-8.2476	-0.0063295	-6.6996	-0.0051416	767.4344162708192	34.033	0.072433	34.032	34.008	34.08	-0.0012474	546	43	1.294491	0.025140882	1.2929716	263.90927	0	5.1254883						67	4	2	NaN	NaN	NaN	0.84455	1	4237	4237		2.7852	0	1	5160.8	+		1028	12254	636	645	759	759					0.041178615257990714
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.7638318005	2	491.763832	981.513111	2.1116	0.0010384	-3.0272	-0.0014887	-0.91561	-0.00045026	491.7621457756336	17.861	0.11992	17.861	17.837	17.957	0	1323	61	0.8228144	0.03692949	0.8228144	334.19562	0	14.999329						196	6	3	NaN	NaN	NaN	0.12945	1	7940	7940		31.561	16.386	1	24754			1029	2966	637	646	760	760					0.02161463689287757
AVIEAEHTL	9	Unmodified	_AVIEAEHTL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000436565.2_1_13:77561342-77561690:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.7638318005	2	491.763832	981.513111	1.3905	0.00068382	0.12109	5.9547E-05	1.5116	0.00074337	491.76415227768655	17.882	0.11996	17.868	17.844	17.964	-0.013786	1323	55	0.8228144	0.033232927	0.82129496	334.19562	0	13.497955						178	6	3	NaN	NaN	NaN	0.094712	1	7766	7766		36.586	13.252	1	24210			1030	2966	637	646	761	761					0.02161463689287757
AVIPSSIVL	9	Unmodified	_AVIPSSIVL_					0	0	0		ENST00000217173.6_1_20:3102175-3102238:-|nuORF;nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	ENST00000217173.6_1_20:3102175-3102238:-|nuORF	ENST00000217173.6_1_20:3102175-3102238:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5607953861	1	898.560795	897.553519	1.861	0.0016722	0.33349	0.00029966	2.1944	0.0019718	898.5616505432829	29.908	0.096506	29.908	29.86	29.956	0	330	52	1.4233059	0.030296564	1.4233059	289.4243	0	6.1607056						85	5	2	NaN	NaN	NaN	0.094712	1	6032	6032		36.586	11.625	1	7013.9			1031	5386	638	647	762	762					0.10064430079705744
AVLEQMSP	8	Unmodified	_AVLEQMSP_					0	0	0			REV__nc|ENSG00000133250|Q96IQ9|ZNF414	REV__nc|ENSG00000133250|Q96IQ9|ZNF414	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4338803130001	1	874.43388	873.426604	0.77484	0.00067755	-4.1336	-0.0036145	-3.3587	-0.002937	874.430502207636	32.924	0.14478	32.921	32.873	33.018	-0.0024757	402	76	1.3804773	0.044681907	1.3789579	280.83234	0	9.089722						175	7	2	NaN	NaN	NaN	0.528	1	5575	5575		29.598	4.6373	1	16415	+		1032	9563	639	648	763	763					-0.01517239136921944
AVMTVAILL	9	Unmodified	_AVMTVAILL_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.5692515824002	1	930.569252	929.561975	1.5539	0.001446	-0.51776	-0.00048181	1.0361	0.00096416	930.5696101285005	34.443	0.048222	34.443	34.443	34.491	-0.0006485	231	40	1.4820169	0.023086786	1.4804975	301.20627	0	4.6921997						66	3	3	NaN	NaN	NaN	0.078597	1	6470	6470		38.918	6.4651	1	4182.8			1033	1773	640	649	764	764					0.09437660724688612
AVMTVAILL	9	Unmodified						0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.569252	929.561975	1.9779	0.0018406	2.4333	0.0022644	4.4112	0.004105	930.572477906819	34.469	0.048244	34.469	34.445	34.493	0	234	37	1.4802408	0.021314383	1.4802408	300.84528		4.3319397	0.013004	0.0016556	-0.00012833	NaN	38.918	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3862.5			1034	1773	640	649							0.09437660724688612
AVNLNSAGE	9	Unmodified	_AVNLNSAGE_					0	0	0		ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4264867492001	1	874.426487	873.41921	1.0259	0.00089711	4.0869	0.0035737	5.1128	0.0044708	874.4297621170999	32.9	0.09655	32.9	32.876	32.973	0	405	64	1.3786905	0.037528872	1.3786905	280.46884	0	7.634552						123	5	2	NaN	NaN	NaN	0.19268	1	5712	5712		25.801	1.9505	1	12122			1035	7516	641	650	765	765					-0.02256255412999053
AVNLNSAGE	9	Unmodified						0	0	0		ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	874.426487	873.41921	0.77485	0.00067755	4.3217	0.003779	5.0966	0.0044566	874.430502207636	32.924	0.14478	32.921	32.873	33.018	-0.0024757	402	76	1.3804773	0.044681907	1.3789579	280.83234		9.089722	0.010311	9.1975E-05	0.00013373	NaN	25.801	175	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16415			1036	7516	641	650							-0.02256255412999053
AVNPIIYSF	9	Unmodified	_AVNPIIYSF_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2791177239501	2	512.279118	1022.54368	0.87356	0.0004475	-0.95328	-0.00048834	-0.079721	-4.084E-05	512.2787882371118	29.618	0.19303	29.61	29.538	29.731	-0.0070648	1281	76	0.84864825	0.046099424	0.8471288	344.49713	0	18.71344						214	9	3	NaN	NaN	NaN	0.35794	1	9277	9277		15.463	4.8577	1	16231			1037	2483	642	651	766	766					0.03331242074330021
AVNPIIYSF	9	Unmodified						0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.279118	1022.54368	1.7758	0.0009097	-3.0227	-0.0015484	-1.2469	-0.00063875	512.2771941230989	29.594	0.12066	29.594	29.594	29.715	0	1284	67	0.8468043	0.040569723	0.8468043	343.7486		16.46875	-0.0081024	-0.0014434	-0.00016227	NaN	15.463	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8633			1038	2483	642	651							0.03331242074330021
AVNYNRINML	10	Unmodified	_AVNYNRINML_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.3162398992501	2	604.31624	1206.61793	1.1012	0.00066548	-3.7043	-0.0022386	-2.6031	-0.0015731	604.3144731743209	21.778	0.048124	21.764	21.74	21.788	-0.013895	1152	64	0.92775106	0.03856069	0.9262317	375.8438	0	15.621429						70	3	2	NaN	NaN	NaN	0.73444	1	15986	15986		5.6942	0.50528	1	9406.8	+		1039	8584	643	652	767	767					0.022882618942276167
AVPGGGCL	8	Unmodified	_AVPGGGCL_					0	0	0		ENST00000423400.5_1_1:11863371-11863530:-|nuORF	ENST00000423400.5_1_1:11863371-11863530:-|nuORF	ENST00000423400.5_1_1:11863371-11863530:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3337723379001	1	673.333772	672.326496	1.0521	0.00070838	3.65	0.0024577	4.7021	0.0031661	673.3360169484699	24.381	0.16896	24.368	24.296	24.465	-0.012749	753	100	1.1701111	0.05971551	1.1685916	239.13809	0	12.204208						217	8	2	NaN	NaN	NaN	0.84651	1	2570	2570		1.6704	0	1	13849			1040	6926	644	653	768	768					-0.022774316800678207
AVPPGLVGYVM	11	Unmodified	_AVPPGLVGYVM_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.20369396620003	3	368.203694	1101.58925	1.6886	0.00062174	4.3283	0.0015937	6.0169	0.0022154	368.20537976417734	19.444	0.095999	19.444	19.42	19.516	0	1476	37	0.72837335	0.022282898	0.72837335	443.08185	0	13.555084						65	5	2	NaN	NaN	NaN	0.70904	1	12915	12915		2.7042	0	1	6215.5			1041	4862	645	654	769	769					0.04252144265069546
AVPSLPGPIL	10	Unmodified	_AVPSLPGPIL_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.2973104771	2	482.29731	962.580068	2.0003	0.00096475	-1.935	-0.00093326	0.065297	3.1493E-05	482.29637446566494	21.44	0.096283	21.426	21.378	21.475	-0.014006	1320	52	0.824661	0.031395137	0.8231416	335.03665	0	12.754974						119	5	3	NaN	NaN	NaN	0.33935	1	7259	7259		26.115	2.7805	1	15017	+		1042	11241	646	655	770	770					0.09728118971031563
AVPYKRLM	8	Unmodified	_AVPYKRLM_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.5600838796001	1	977.560084	976.552807	1.9092	0.0018663	-0.42884	-0.00041921	1.4803	0.0014471	977.5592911175899	54.596	0.096325	54.596	54.548	54.644	0	171	85	1.5174994	0.049643874	1.5174994	308.20105	0	10.082581						170	5	3	NaN	NaN	NaN	0.84727	1	7801	7801		1.2418	0	1	18351			1043	5694	647	656	771	771					0.06359312159008823
AVQCQEPLTMM	11	Unmodified	_AVQCQEPLTMM_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.7825267195999	2	625.782527	1249.5505	2.1177	0.0013252	-8.1634	-0.0051085	-6.0457	-0.0037833	625.776571836116	23.007	0.072115	23.007	23.007	23.079	0	1188	34	0.90571284	0.02022028	0.90571284	366.7733	0	8.188324						39	4	2	NaN	NaN	NaN	0.74794	1	17760	17760		4.3102	0.34164	1	3024.3			1044	5610	648	657	772	772					-0.06429272423292787
AVQTKLIM	8	Unmodified	_AVQTKLIM_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;POGZ-SLC6A13|2|fusion;POGZ-SLC6A13|4|fusion;POGZ-SLC6A13|1|fusion;POGZ-SLC6A13|3|fusion;POGZ-SLC6A13|5|fusion	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.27023844685004	2	452.270238	902.525924	1.1923	0.00053925	-2.3922	-0.0010819	-1.1999	-0.00054267	452.26910234542515	22.163	0.072386	22.163	22.139	22.212	0	1362	34	0.79879075	0.02034092	0.79879075	324.8302	0	8.2716675						80	4	3	NaN	NaN	NaN	0.5868	1	6134	6134		26.115	2.7805	1	6965.6			1045	3424	649	658	773	773					0.07076203547831028
AVSAACYA	8	Unmodified	_AVSAACYA_					0	0	0			REV__nc|ENSG00000257365|P49356-2|FNTB	REV__nc|ENSG00000257365|P49356-2|FNTB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3392516462999	1	755.339252	754.331975	1.654	0.0012494	-3.335	-0.002519	-1.681	-0.0012697	755.336102075361	55.028	0.047966	55.028	55.004	55.052	0	444	76	1.3554435	0.044753432	1.3554435	276.4136	0	9.126495						100	3	2	NaN	NaN	NaN	0.84207	1	4138	4138		3.5732	0	1	10710	+		1046	11385	650	659	774	774					-0.05501752888278588
AVSAACYA	8	Unmodified						0	0	0			REV__nc|ENSG00000257365|P49356-2|FNTB	REV__nc|ENSG00000257365|P49356-2|FNTB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.339252	754.331975	1.654	0.0012494	-3.335	-0.002519	-1.681	-0.0012697	755.336102075361	55.028	0.047966	55.028	55.004	55.052	0	444	76	1.3554435	0.044753432	1.3554435	276.4136		9.126495	0.0012148	-0.00094712	-0.0010296	NaN	3.5732	100	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10710	+		1047	11385	650	659							-0.05501752888278588
AVSKAGAG	8	Unmodified	_AVSKAGAG_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3675153073001	1	660.367515	659.360239	1.3473	0.00088973	-10.676	-0.00705	-9.3285	-0.0061602	660.3578418822764	27.301	0.26546	27.291	27.049	27.315	-0.010126	735	136	1.1809633	0.08145666	1.1794438	241.45067	0	16.653992						613	12	2	NaN	NaN	NaN	0.84512	1	2207	2207		2.4615	0	1	67553			1048	5624	651	660	775	775					0.016933130833308496
AVSSPDPLL	9	Unmodified	_AVSSPDPLL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.4880243735	1	898.488024	897.480748	1.8179	0.0016334	-0.026665	-2.3958E-05	1.7913	0.0016094	898.487551958179	25.033	0.14478	25.033	24.985	25.129	0	351	130	1.4108255	0.07679582	1.4108255	286.8868	0	15.61618						311	7	3	NaN	NaN	NaN	0.0072287	1	6024	6024		98.041	13.162	1	43087			1049	4512	652	661	776	776					0.027906762862812684
AVSSPDPLL	9	Unmodified	_AVSSPDPLL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.4880243735	1	898.488024	897.480748	1.6258	0.0014608	0.37275	0.00033491	1.9986	0.0017957	898.488174887314	25.033	0.14476	25.021	24.972	25.117	-0.012011	351	109	1.4108255	0.064263344	1.409306	286.8868	0	13.067749						297	7	3	NaN	NaN	NaN	0.011942	1	5912	5912		87.021	18.912	1	40203			1050	4512	652	661	777	777					0.027906762862812684
AVTDFILLG	9	Unmodified	_AVTDFILLG_					0	0	0		ENSG00000187857|ENST00000641576|OR6C75	ENSG00000187857|ENST00000641576|OR6C75	ENSG00000187857|ENST00000641576|OR6C75	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5400599440002	1	948.54006	947.532783	1.3902	0.0013187	0.042542	4.0353E-05	1.4328	0.0013591	948.5392331241701	32.563	0.072376	32.563	32.514	32.587	0	258	58	1.4660252	0.033774614	1.4660252	297.8736	0	6.862488						131	4	3	NaN	NaN	NaN	0.078597	1	7031	7031		38.918	0	1	13098			1051	5526	653	662	778	778					0.05691839700057244
AVTGLHLR	8	Unmodified	_AVTGLHLR_					0	0	0			REV__nc|ENSG00000054793|O75110-2|ATP9A	REV__nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.76396918625005	2	433.763969	865.513385	1.7438	0.00075638	-3.7944	-0.0016459	-2.0506	-0.00088947	433.7624095598534	13.565	0.096091	13.565	13.517	13.613	0	1380	37	0.7876915	0.02220571	0.7876915	320.52185	0	9.035797						67	5	2	NaN	NaN	NaN	0.78264	1	5611	5611		11.548	2.4253	1	6102	+		1052	8504	654	663	779	779					0.07524928199802616
AVTHPLSLSF	10	Unmodified	_AVTHPLSLSF_					0	0	0			REV__ENST00000410062.8_1_2:181845343-181846756:+|nuORF	REV__ENST00000410062.8_1_2:181845343-181846756:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	2.1048	0.0011288	-10.894	-0.0058426	-8.7897	-0.0047139	536.2896429766523	25.274	0.14477	25.274	25.202	25.346	0	1239	55	0.87444305	0.033143222	0.87444305	354.75662	0	13.446014						138	7	3	NaN	NaN	NaN	0.2358	1	11589	11589		32.453	4.6639	1	49703	+		1053	12063	655	664	780	780					0.04358029477339187
AVTHPLSLSF	10	Unmodified						0	0	0			REV__ENST00000410062.8_1_2:181845343-181846756:+|nuORF	REV__ENST00000410062.8_1_2:181845343-181846756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.295299	1070.57605	2.1048	0.0011288	-10.894	-0.0058426	-8.7897	-0.0047139	536.2896429766523	25.274	0.14477	25.274	25.202	25.346	0	1239	55	0.87444305	0.033143222	0.87444305	354.75662		13.446014	0	0	0	NaN	32.453	138	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49703	+		1054	12063	655	664							0.04358029477339187
AVTSVAKVVR	10	Unmodified	_AVTSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3243908948501	2	515.324391	1028.63423	2.2724	0.001171	-2.3415	-0.0012067	-0.069149	-3.5634E-05	515.3235523508454	13.973	0.072027	13.973	13.949	14.021	0	1233	34	0.87812483	0.020246506	0.87812483	356.43472	0	8.21817						80	4	3	NaN	NaN	NaN	0.21251	1	9735	9735		34.454	20.991	1	9488.4			1055	4437	656	665	781	781					0.12105711122626417
AVTSVAKVVR	10	Unmodified	_AVTSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.3243908948501	2	515.324391	1028.63423	1.3803	0.00071131	-0.99505	-0.00051277	0.38527	0.00019854	515.3238520286438	14.045	0.11995	14.034	13.986	14.106	-0.010672	1233	34	0.87812483	0.020248711	0.8766054	356.4347	0	8.219055						89	6	2	NaN	NaN	NaN	0.19179	1	9536	9536		36.235	15.786	1	8393.8			1056	4437	656	665	782	782					0.12105711122626417
AVVAGSSL	8	Unmodified	_AVVAGSSL_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3984810846999	1	703.398481	702.391205	1.3036	0.00091692	-9.6709	-0.0068025	-8.3673	-0.0058856	703.3913601009076	54.068	0.071907	54.068	54.044	54.116	0	522	49	1.3088527	0.02871108	1.3088527	267.26465	0	5.862732						71	4	2	NaN	NaN	NaN	0.84651	1	3256	3256		1.6704	0	1	4727.6	+		1057	8931	657	666	783	783					0.028104663975568656
AVVDVRIGMTR	11	Unmodified	_AVVDVRIGMTR_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.8451645142001	2	608.845165	1215.67578	1.2838	0.00078165	-0.8035	-0.00048921	0.48033	0.00029245	608.8448061443585	19.226	0.072084	19.212	19.164	19.236	-0.014141	1101	31	0.95892316	0.018319666	0.9574037	388.43927	0	7.420929						72	4	3	NaN	NaN	NaN	0.6678	1	16216	16216		9.5705	1.8879	1	7169.4			1058	1986	658	667	784	784					0.07656523819628092
AVVDVRIGMTR	11	Unmodified						0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.845165	1215.67578	1.2782	0.0007782	-0.99363	-0.00060497	0.28452	0.00017323	608.8449832462508	19.156	0.047989	19.156	19.132	19.18	0	1098	34	0.960755	0.020150542	0.960755	389.18134		8.162567	-0.027883	-9.7444E-05	0.0016757	NaN	9.5705	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7158.1			1059	1986	658	667							0.07656523819628092
AVVFVLIY	8	Unmodified	_AVVFVLIY_					0	0	0			REV__nc|ENSG00000163870|Q86W33-2|TPRA1	REV__nc|ENSG00000163870|Q86W33-2|TPRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5600671046002	1	923.560067	922.552791	-0.62021	-0.0005728	7.4257	0.0068581	6.8055	0.0062852	923.5673653088179	55.05	0.047993	55.049	55.025	55.073	-0.0006218	276	85	1.4553556	0.04983926	1.4538362	295.82034	0	10.130493						126	3	3	NaN	NaN	NaN	0.84651	1	6332	6332		1.6704	0	1	11770	+		1060	10304	659	668	785	785					0.08841635430667338
AVVLAPLAL	9	Unmodified	_AVVLAPLAL_					0	0	0			REV__GNL1|p.P231L|1|0.26|ENSG00000204590|chr6:30553466-30553466|G/A|missense_variant	REV__GNL1|p.P231L|1|0.26|ENSG00000204590|chr6:30553466-30553466|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.5709661418999	1	866.570966	865.56369	-0.54534	-0.00047258	-1.265	-0.0010962	-1.8103	-0.0015688	866.5698905669585	55.194	0.096272	55.193	55.169	55.266	-0.0006218	339	70	1.4179583	0.041006923	1.4164388	288.49774	0	8.343292						174	5	4	NaN	NaN	NaN	0.6762	1	5472	5472		1.2418	0	1	37926	+		1061	13000	660	669	786	786					0.12553037804923406
AVWAKRELHR	10	Unmodified	_AVWAKRELHR_					0	0	0			REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.36491303885	2	633.364913	1264.71527	1.2098	0.00076627	3.9115	0.0024774	5.1213	0.0032437	633.3675426424784	32.104	0.21717	32.104	31.935	32.152	0	1044	61	0.99369496	0.036552608	0.99369496	402.3493	0	14.800232						221	10	2	NaN	NaN	NaN	0.77884	1	18109	18109		0.79988	0.20265	1	20550	+		1062	8297	661	670	787	787					0.09350411885338872
AVWAKRELHR	10	Unmodified						0	0	0			REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	633.364913	1264.71527	1.2098	0.00076627	3.9115	0.0024774	5.1213	0.0032437	633.3675426424784	32.104	0.21717	32.104	31.935	32.152	0	1044	61	0.99369496	0.036552608	0.99369496	402.3493		14.800232	0.014508	-0.00091423	-0.0028959	NaN	0.79988	221	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20550	+		1063	8297	661	670							0.09350411885338872
AVWAKRELHR	10	Unmodified						0	0	0			REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	REV__CRY1|p.E222K|1|0.14|ENSG00000008405|chr12:107001300-107001300|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.364913	1264.71527	0.78728	0.00049864	5.0017	0.0031679	5.7889	0.0036665	633.3679169848149	32.079	0.24131	32.075	31.954	32.196	-0.0037613	1032	67	1.0010062	0.04019493	0.99948686	405.3097		16.275024	-0.014508	0.00046674	0.0028959	NaN	0.79988	269	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19355	+		1064	8297	661	670							0.09350411885338872
AVWALGKA	8	Unmodified	_AVWALGKA_					0	0	0		ENST00000397940.5_3_8:21881740-21881821:+|nuORF	ENST00000397940.5_3_8:21881740-21881821:+|nuORF	ENST00000397940.5_3_8:21881740-21881821:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4774001077001	1	815.4774	814.470124	-0.19335	-0.00015767	2.5513	0.0020805	2.3579	0.0019228	815.479286482991	55.819	0.071976	55.818	55.794	55.866	-0.00059128	465	58	1.3429124	0.0340271	1.341393	273.49683	0	6.9299316						120	4	3	NaN	NaN	NaN	0.84651	1	4842	4842		1.6704	0	1	16569			1065	6812	662	671	788	788					0.05546738422515318
AVWALGKA	8	Unmodified						0	0	0		ENST00000397940.5_3_8:21881740-21881821:+|nuORF	ENST00000397940.5_3_8:21881740-21881821:+|nuORF	ENST00000397940.5_3_8:21881740-21881821:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.4774	814.470124	2.0784	0.0016949	0.432	0.00035229	2.5104	0.0020472	815.4774221168245	55.821	0.072052	55.821	55.797	55.869	0	468	55	1.3411216	0.032237887	1.3411216	273.1321		6.5655518	0.0013843	-0.0010733	-0.00013573	NaN	1.6704	117	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18111			1066	6812	662	671							0.05546738422515318
AVYHDYGMAT	10	Unmodified	_AVYHDYGMAT_					0	0	0			REV__nc|ENSG00000249730|P0C629|OR10J4	REV__nc|ENSG00000249730|P0C629|OR10J4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2449489431001	2	564.244949	1126.47534	1.0842	0.00061177	0.86205	0.00048641	1.9463	0.0010982	564.245417635664	33.624	0.12059	33.624	33.576	33.697	0	1260	73	0.8615505	0.04420048	0.8615505	349.30576	0	17.920563						187	6	3	NaN	NaN	NaN	0.76548	1	13940	13940		3.5698	0.35817	1	21791	+		1067	13248	663	672	789	789					-0.08283370567824022
AWAAMALTF	9	Unmodified	_AWAAMALTF_					0	0	0		ENST00000579674.1_1_17:27899162-27899804:+|nuORF;ENSG00000167543|ENST00000301057|TP53I13	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4862502345	1	981.48625	980.478974	1.2135	0.001191	-0.075878	-7.4473E-05	1.1376	0.0011165	981.4870615841456	33.142	0.12066	33.142	33.094	33.214	0	201	67	1.4997677	0.039043188	1.4997677	304.58276	0	7.929138						119	6	2	NaN	NaN	NaN	0.13477	1	7894	7894		30.791	14.355	1	9478.9			1068	4552	664	673	790	790					-0.01204656003335458
AWAAMALTF	9	Unmodified	_AWAAMALTF_					0	0	0		ENST00000579674.1_1_17:27899162-27899804:+|nuORF;ENSG00000167543|ENST00000301057|TP53I13	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.4862502345	1	981.48625	980.478974	1.4055	0.0013795	-1.7368	-0.0017046	-0.33128	-0.00032514	981.4854660869192	33.14	0.096493	33.138	33.114	33.21	-0.0024757	201	49	1.4997677	0.028385997	1.4982482	304.58276	0	5.764801						98	5	2	NaN	NaN	NaN	0.13477	1	7727	7727		30.791	15.778	1	8086.9			1069	4552	664	673	791	791					-0.01204656003335458
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;nc|ENSG00000071054|O95819-6|MAP4K4;CHST10-MAP4K4|4|fusion;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.5573475571666	3	415.557348	1243.65021	1.6676	0.00069298	-1.8945	-0.00078725	-0.22687	-9.4278E-05	415.55660270948823	15.15	0.26426	15.15	15.077	15.342	0	1482	97	0.72465914	0.059388936	0.72465914	440.2008	0	36.076355						536	12	4	NaN	NaN	NaN	0.38087	1	17618	17618		24.393	12.244	1	100060			1070	3840;3327;164	665	674	792	792					0.038134173594926324
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-2|MAP4K4;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;nc|ENSG00000071054|O95819-6|MAP4K4;CHST10-MAP4K4|4|fusion;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.83238310245	2	622.832383	1243.65021	1.3535	0.00084299	-0.43939	-0.00027367	0.91408	0.00056932	623.3339481130191	15.15	0.12016	15.15	15.101	15.222	0	1122	73	0.9460945	0.044000506	0.9460945	383.14587	0	17.819183						126	6	2	NaN	NaN	NaN	0.57785	1	17619	17619		20.449	14.755	1	8956.2			1071	3840;3327;164	665	674	793	793					0.038134173594926324
AWDIAIATM	9	Unmodified	_AWDIAIATM_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.4917295429002	1	991.49173	990.484453	1.3575	0.001346	-0.26776	-0.00026548	1.0898	0.0010805	991.4922282138199	31.066	0.12067	31.066	31.018	31.139	0	183	91	1.510409	0.053218126	1.510409	306.70093	0	10.806366						225	6	3	NaN	NaN	NaN	0.094712	1	8230	8230		36.586	9.8549	1	26747			1072	305	666	675	794	794					-0.011169772114953957
AWDIAIATM	9	Unmodified	_AWDIAIATM_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.4917295429002	1	991.49173	990.484453	1.4182	0.0014062	-0.40489	-0.00040145	1.0134	0.0010047	991.491115610614	31.041	0.12069	31.036	31.012	31.133	-0.0050716	180	85	1.5121819	0.04965973	1.5106624	307.06094	0	10.083801						250	6	4	NaN	NaN	NaN	0.14301	1	8056	8056		29.598	11.799	1	26578			1073	305	666	675	795	795					-0.011169772114953957
AWDIAIATM	9	Oxidation (M)	_AWDIAIATM(Oxidation (M))_		AWDIAIATM(1)		AWDIAIATM(89)	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4866441650003	1	1007.48664	1006.47937	1.2813	0.0012909	2.5014	0.0025201	3.7827	0.003811	1007.4887780053215	27.301	0.14483	27.291	27.267	27.411	-0.010126	180	97	1.5121819	0.056771994	1.5106624	306.99396	0	11.525513						287	7	3	NaN	NaN	NaN	0.011206	1	8667	8667		89.256	47.471	1	30766			1074	305	666	676	796	796		26			-0.023612810741042267
AWDLGTNFF	9	Unmodified	_AWDLGTNFF_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;ENST00000506571.1_1_4:68544155-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4941723839	1	1070.49417	1069.4869	1.0663	0.0011415	1.6954	0.0018149	2.7617	0.0029564	1070.4955532505505	33.576	0.12054	33.576	33.528	33.648	0	93	70	1.5635144	0.040660262	1.5635144	317.16235	0	8.248016						202	6	3	NaN	NaN	NaN	0.13602	1	11531	11531		30.61	15.435	1	25850			1075	499	667	677	797	797					-0.04506805482196796
AWDLGTNFF	9	Unmodified						0	0	0		ENSG00000033178|ENST00000322244|UBA6;ENST00000506571.1_1_4:68544155-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1070.49417	1069.4869	0.42269	0.00045249	1.4727	0.0015765	1.8954	0.002029	1070.495227073333	33.599	0.12065	33.597	33.549	33.67	-0.0018501	90	64	1.5652816	0.037112713	1.5637622	317.52084		7.528412	0.010486	-0.00010466	0.00012392	NaN	30.61	206	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23926			1076	499	667	677							-0.04506805482196796
AWESLAWL	8	Unmodified	_AWESLAWL_					0	0	0		ENST00000498314.5_1_3:49002413-49006047:+|nuORF	ENST00000498314.5_1_3:49002413-49006047:+|nuORF	ENST00000498314.5_1_3:49002413-49006047:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.4934441023998	1	975.493444	974.486168	1.4125	0.0013779	0.078828	7.6896E-05	1.4914	0.0014548	975.4934290307623	34.974	0.1689	34.974	34.95	35.119	-4.5776E-05	228	52	1.4837929	0.030190468	1.4822735	301.3642	0	6.131836						166	8	3	NaN	NaN	NaN	0.40747	1	7578	7578		36.036	7.3698	1	13595			1077	7302	668	678	798	798					-0.0020960013126796184
AWHNRIAL	8	Unmodified	_AWHNRIAL_					0	0	0		ENST00000560937.1_1_15:89442628-89444976:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.77486822354996	2	490.774868	979.535184	2.0566	0.0010094	-3.9797	-0.0019531	-1.923	-0.00094378	490.7732509603233	22.959	0.14443	22.959	22.911	23.055	0	1338	58	0.81357855	0.035092473	0.81357855	330.45358	0	14.253632						173	7	3	NaN	NaN	NaN	0.83211	1	7870	7870		4.9097	1.7564	1	26693			1078	3274	669	679	799	799					0.044597329483508474
AWHNRIAL	8	Unmodified						0	0	0		ENST00000560937.1_1_15:89442628-89444976:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.774868	979.535184	1.132	0.00055556	-4.3843	-0.0021517	-3.2523	-0.0015962	490.772873769054	22.982	0.1446	22.969	22.921	23.065	-0.01354	1338	52	0.81357855	0.031401932	0.8120591	330.45358		12.754639	0.0049323	-0.00018391	-0.00075972	NaN	4.9097	198	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27207			1079	3274	669	679							0.044597329483508474
AWIEHVHVI	9	Unmodified	_AWIEHVHVI_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.3034584875	2	552.303458	1102.59236	1.4235	0.00078622	-2.5025	-0.0013822	-1.079	-0.00059593	552.3015012408687	22.043	0.048246	22.043	22.043	22.091	0	1185	37	0.90755045	0.022050142	0.90755045	368.05225	0	8.942322						62	3	2	NaN	NaN	NaN	0.043119	1	12956	12956		49.833	26.715	1	7871.7			1080	984	670	680	800	800					0.04517155434086817
AWLSDSPLF	9	Unmodified	_AWLSDSPLF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.514573475	1	1035.51457	1034.5073	1.3692	0.0014178	2.389	0.0024739	3.7582	0.0038917	1035.5179250507754	32.876	0.12067	32.876	32.852	32.973	0	120	112	1.5476005	0.06550014	1.5476005	314.06937	0	13.292572						420	6	3	NaN	NaN	NaN	0.014943	1	9968	9968		78.398	46.837	1	90349			1081	7828	671	681	801	801					-0.00857634822386899
AWLSDSPLF	9	Unmodified	_AWLSDSPLF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.514573475	1	1035.51457	1034.5073	1.1493	0.0011901	1.5596	0.0016149	2.7088	0.002805	1035.517039245415	32.875	0.14474	32.872	32.824	32.969	-0.0031052	117	109	1.5493695	0.06371963	1.54785	314.42834	0	12.931244						454	7	3	NaN	NaN	NaN	1.433E-07	1	9756	9756		136.23	80.284	1	86693			1082	7828	671	681	802	802					-0.00857634822386899
AWMSSVFHF	9	Unmodified	_AWMSSVFHF_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2551196989001	2	556.25512	1110.49569	1.4825	0.00082463	-7.0475	-0.0039202	-5.565	-0.0030956	556.2527193781654	29.884	0.12065	29.884	29.86	29.98	0	1257	67	0.86339295	0.04054779	0.86339295	350.11365	0	16.442474						132	6	3	NaN	NaN	NaN	0.53206	1	13287	13287		8.2903	5.1369	1	11417			1083	1769	672	682	803	803					-0.05514155117361952
AWMSSVFHF	9	Oxidation (M)	_AWM(Oxidation (M))SSVFHF_		AWM(1)SSVFHF		AWM(41)SSVFHF	0	0	1		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2525770099501	2	564.252577	1126.4906	2.039	0.0011505	4.3277	0.0024419	6.3667	0.0035924	564.2572844582484	26.481	0.096508	26.481	26.456	26.553	0	1260	70	0.8615505	0.04234737	0.8615505	349.30566	0	17.16922						95	5	3	NaN	NaN	NaN	0.062836	1	13946	13946		41.46	31.714	1	6097.7			1084	1769	672	683	804	804		199			-0.06758458979970783
AWRRLHPFRRQ	11	Unmodified	_AWRRLHPFRRQ_					0	0	0			REV__SVA_A_dup46|chr1:153582339-153583909:+|2.031148181261908|0.1339009560295861|3.92|521.0|45|1|anti-sense	REV__SVA_A_dup46|chr1:153582339-153583909:+|2.031148181261908|0.1339009560295861|3.92|521.0|45|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.9343597978	2	761.93436	1521.85417	1.9239	0.0014659	5.4302	0.0041374	7.3541	0.0056033	761.9384858291469	23.393	0.072372	23.393	23.369	23.441	0	996	40	1.0229213	0.023724794	1.0229213	413.4264	0	9.588654						124	4	4	NaN	NaN	NaN	0.73455	1	20649	20649		5.1889	0.87873	1	20993	+		1085	13343	673	684	805	805					0.114113745735267
AWRRTGADI	9	Unmodified	_AWRRTGADI_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.28051470745	2	523.280515	1044.54648	1.1645	0.00060936	-2.2815	-0.0011939	-1.117	-0.00058452	523.2784442187274	22.332	0.14451	22.318	22.246	22.39	-0.013731	1278	40	0.85049206	0.023969114	0.8489726	345.149	0	9.727203						119	7	2	NaN	NaN	NaN	0.44082	1	10194	10194		12.049	1.805	1	16533	+		1086	9804	674	685	806	806					0.025985102518461645
AWRRTGADI	9	Unmodified						0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.280515	1044.54648	1.1645	0.00060936	-2.2815	-0.0011939	-1.117	-0.00058452	523.2784442187274	22.332	0.14451	22.318	22.246	22.39	-0.013731	1278	40	0.85049206	0.023969114	0.8489726	345.149		9.727203	-0.0070855	0.00022432	-0.00075972	NaN	12.049	119	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16533	+		1087	9804	674	685							0.025985102518461645
AYAAATAPQAV	11	Unmodified	_AYAAATAPQAV_					0	0	0			REV__ENSG00000239306|ENST00000310137|RBM14	REV__ENSG00000239306|ENST00000310137|RBM14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.26928131915	2	517.269281	1032.52401	1.5502	0.00080188	-9.7368	-0.0050365	-8.1866	-0.0042347	517.2636679345366	14.789	0.12005	14.789	14.741	14.861	0	1326	49	0.8209676	0.029543579	0.8209676	333.2178	0	11.991272						101	6	2	NaN	NaN	NaN	0.61551	1	9885	9885		13.003	0	1	10637	+		1088	11333	675	686	807	807					0.009048660635471606
AYADVQAVL	9	Unmodified	_AYADVQAVL_					0	0	0		ENST00000489293.5_1_7:116770554-116838385:+|nuORF;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1|ST7	ENST00000489293.5_1_7:116770554-116838385:+|nuORF	ENST00000489293.5_1_7:116770554-116838385:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.4989234108001	1	949.498923	948.491647	2.0241	0.0019219	0.6551	0.00062202	2.6792	0.0025439	949.5001060847436	25.322	0.24129	25.322	25.226	25.467	0	252	115	1.4695803	0.06760311	1.4695803	298.59158	0	13.735687						416	11	3	NaN	NaN	NaN	0.042816	1	7047	7047		49.961	10.503	1	53127			1089	313	676	687	808	808					0.01534078660574778
AYADVQAVL	9	Unmodified	_AYADVQAVL_					0	0	0		ENST00000489293.5_1_7:116770554-116838385:+|nuORF;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1|ST7	ENST00000489293.5_1_7:116770554-116838385:+|nuORF	ENST00000489293.5_1_7:116770554-116838385:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.4989234108001	1	949.498923	948.491647	1.8265	0.0017342	1.8222	0.0017302	3.6487	0.0034644	949.5011571796948	25.322	0.21707	25.31	25.214	25.431	-0.012011	252	112	1.4695803	0.06582761	1.4680609	298.59158	0	13.374939						383	10	4	NaN	NaN	NaN	0.39244	1	6919	6919		14.042	3.4366	1	46514			1090	313	676	687	809	809					0.01534078660574778
AYADYKYFVSL	11	Unmodified	_AYADYKYFVSL_					0	0	0		ENST00000478601.1_1_3:122478069-122496706:-|nuORF;nc|ENSG00000169087|Q96EW2-2|HSPBAP1;ENST00000467643.5_1_3:122474254-122512599:-|nuORF;nc|ENSG00000169087|Q96EW2-3|HSPBAP1;ENST00000465044.5_1_3:122473819-122512560:-|nuORF;ENSG00000169087|ENST00000306103|HSPBAP1	ENST00000478601.1_1_3:122478069-122496706:-|nuORF	ENST00000478601.1_1_3:122478069-122496706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.3320785412	2	670.332079	1338.6496	1.2117	0.00081227	-0.44775	-0.00030014	0.764	0.00051213	670.3316845282594	27.06	0.096586	27.06	27.036	27.133	0	1023	46	1.0064877	0.02740711	1.0064877	407.28595	0	11.090576						95	5	2	NaN	NaN	NaN	0.2084	1	19389	19389		29.547	19.801	1	8605			1091	4656	677	688	810	810					-0.006174668708808895
AYADYKYFVSL	11	Unmodified	_AYADYKYFVSL_					0	0	0		ENST00000478601.1_1_3:122478069-122496706:-|nuORF;nc|ENSG00000169087|Q96EW2-2|HSPBAP1;ENST00000467643.5_1_3:122474254-122512599:-|nuORF;nc|ENSG00000169087|Q96EW2-3|HSPBAP1;ENST00000465044.5_1_3:122473819-122512560:-|nuORF;ENSG00000169087|ENST00000306103|HSPBAP1	ENST00000478601.1_1_3:122478069-122496706:-|nuORF	ENST00000478601.1_1_3:122478069-122496706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3320785412	2	670.332079	1338.6496	1.3154	0.00088177	-1.4048	-0.00094168	-0.089373	-5.991E-05	670.3313937792792	27.084	0.096531	27.074	27.049	27.146	-0.010124	1026	40	1.0046607	0.023750246	1.0031413	406.54666	0	9.610809						95	5	3	NaN	NaN	NaN	0.40559	1	18524	18524		21.85	8.3874	1	6448.7			1092	4656	677	688	811	811					-0.006174668708808895
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.26875000289994	2	489.26875	976.522947	1.9561	0.00095706	-1.2199	-0.00059687	0.73619	0.00036019	489.2682569030525	28.026	0.12063	28.026	27.977	28.098	0	1290	55	0.84311575	0.033200562	0.84311575	342.46542	0	13.485779						193	6	3	NaN	NaN	NaN	0.028349	1	7796	7796		61.271	16.969	1	53297			1093	5625	678	689	812	812					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.5302235391999	1	977.530224	976.522947	2.4363	0.0023816	0.2425	0.00023705	2.6788	0.0026186	977.5307438581572	28.026	0.31369	28.026	27.977	28.291	0	177	172	1.5139546	0.10116291	1.5139546	307.4812	0	20.54599						792	14	5	NaN	NaN	NaN	0.019103	1	7799	7799		73.133	22.818	1	371340			1094	5625	678	689	813	813					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.26875000289994	2	489.26875	976.522947	0.95872	0.00046907	-1.2038	-0.00058899	-0.24509	-0.00011991	489.2680077280953	28.049	0.24138	28.04	27.992	28.233	-0.0089779	1290	49	0.84311575	0.02951163	0.8415963	342.46542	0	11.987335						249	11	3	NaN	NaN	NaN	0.036546	1	7639	7639		52.624	7.9856	1	69179			1095	5625	678	689	814	814					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5302235391999	1	977.530224	976.522947	1.9207	0.0018775	0.28164	0.00027531	2.2023	0.0021528	977.5307264229957	28.049	0.21717	28.04	27.968	28.185	-0.0089779	177	166	1.5139546	0.09759259	1.5124352	307.4812	0	19.820862						714	10	5	NaN	NaN	NaN	0.012495	1	7643	7643		85.344	29.931	1	344150			1096	5625	678	689	815	815					0.033746516946507654
AYAFFVQTCR	10	Unmodified	_AYAFFVQTCR_					0	0	0		HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3	HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant	HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.2922334867001	2	603.292233	1204.56991	1.2525	0.0007556	8.3604	0.0050438	9.6129	0.0057994	603.2973088025257	23.947	0.24116	23.934	23.765	24.006	-0.013048	1179	79	0.9112251	0.047754705	0.90970564	369.15598	0	19.346405						296	11	2	NaN	NaN	NaN	0.5358	1	15944	15944		17.97	0.17071	1	67076			1097	489	679	690	816	816					-0.02418812025848638
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.29750744235	2	525.297507	1048.58046	2.0035	0.0010524	-0.7618	-0.00040017	1.2417	0.00065224	525.2972983420728	22.139	0.24126	22.139	22.091	22.332	0	1233	82	0.87812483	0.049717486	0.87812483	356.34515	0	20.175476						574	11	5	NaN	NaN	NaN	0.0073225	1	10582	10582		97.85	28.067	1	390660			1098	3929	680	691	817	817					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5877384181	1	1049.58774	1048.58046	2.2212	0.0023313	-0.50806	-0.00053325	1.7131	0.0017981	1049.5869927445467	22.139	0.072422	22.139	22.115	22.187	0	126	61	1.544062	0.035392284	1.544062	313.29593	0	7.181244						125	4	3	NaN	NaN	NaN	0.013696	1	10583	10583		81.699	26.206	1	12731			1099	3929	680	691	818	818					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.5877384181	1	1049.58774	1048.58046	1.3753	0.0014435	-0.35738	-0.0003751	1.0179	0.0010684	1049.5874050552356	22.139	0.096457	22.125	22.101	22.197	-0.013731	123	58	1.5458313	0.033617258	1.5443119	313.65494	0	6.821106						123	5	3	NaN	NaN	NaN	0.030696	1	10358	10358		58.2	15.882	1	14955			1100	3929	680	691	819	819					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.29750744235	2	525.297507	1048.58046	1.5647	0.00082191	-0.2991	-0.00015712	1.2656	0.0006648	525.2975746781146	22.139	0.21706	22.125	22.101	22.318	-0.013731	1239	79	0.87444305	0.047878683	0.8729236	354.85107	0	19.42929						588	10	5	NaN	NaN	NaN	0.0042638	1	10359	10359		104.2	34.416	1	424770			1101	3929	680	691	820	820					0.05811493900228015
AYAKFYTLL	9	Unmodified	_AYAKFYTLL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3025928202501	2	545.302593	1088.59063	2.0249	0.0011042	-0.45485	-0.00024803	1.5701	0.00085617	545.3021826932911	26.336	0.26549	26.336	26.263	26.529	0	1200	67	0.89836043	0.04046464	0.89836043	364.3831	0	16.412811						433	12	4	NaN	NaN	NaN	0.10363	1	12338	12338		35.296	9.1815	1	115970			1102	3070	681	692	821	821					0.049881016254630595
AYAKFYTLL	9	Unmodified	_AYAKFYTLL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3025928202501	2	545.302593	1088.59063	1.7403	0.00094898	0.5325	0.00029037	2.2728	0.0012393	545.3030799665823	26.36	0.24128	26.349	26.276	26.517	-0.011135	1200	76	0.89836043	0.04598999	0.896841	364.3831	0	18.65393						444	11	4	NaN	NaN	NaN	0.048656	1	12033	12033		47.482	14.056	1	115500			1103	3070	681	692	822	822					0.049881016254630595
AYAKKVEGDMY	11	Unmodified	_AYAKKVEGDMY_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8079133406501	2	637.807913	1273.60127	1.2623	0.00080512	5.1193	0.0032651	6.3816	0.0040702	637.8110672458391	35.215	0.16901	35.215	35.167	35.336	-4.5776E-05	1143	43	0.9332562	0.025686324	0.93173677	377.84903	0	10.399658						141	8	2	NaN	NaN	NaN	0.71564	1	17481	17481		6.4299	0.17972	1	14958			1104	323	682	693	823	823					-0.024582837824027592
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.3082095144001	2	521.30821	1040.60187	1.3835	0.00072121	-1.0158	-0.00052955	0.36764	0.00019166	521.3077777445776	26.94	0.19307	26.94	26.915	27.109	0	1197	64	0.9001988	0.03861493	0.9001988	365.33914	0	15.67157						282	9	4	NaN	NaN	NaN	0.032417	1	10252	10252		55.947	17.029	1	66108			1105	6025	683	694	824	824					0.08318923719616578
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.3082095144001	2	521.30821	1040.60187	1.1955	0.00062321	-1.4608	-0.00076154	-0.26536	-0.00013834	521.307569124833	26.987	0.14484	26.977	26.929	27.074	-0.010126	1197	58	0.9001988	0.034933507	0.8986794	365.33914	0	14.177521						258	7	4	NaN	NaN	NaN	0.013314	1	10039	10039		82.858	33.025	1	61203			1106	6025	683	694	825	825					0.08318923719616578
AYAMRQYFL	9	Unmodified	_AYAMRQYFL_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7893266570001	2	581.789327	1161.5641	1.6585	0.00096487	-0.72418	-0.00042132	0.93427	0.00054355	581.7889711493146	24.164	0.14489	24.164	24.092	24.237	0	1176	73	0.9130621	0.044090807	0.9130621	370.0553	0	17.869598						294	7	4	NaN	NaN	NaN	0.39244	1	15201	15201		14.042	5.7513	1	34602			1107	2630	684	695	826	826					-0.010219105375199433
AYAMRQYFL	9	Unmodified						0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.789327	1161.5641	1.5234	0.00088628	1.2382	0.00072036	2.7615	0.0016066	581.7892716252472	24.188	0.12064	24.175	24.151	24.272	-0.012749	1173	76	0.91489893	0.045930386	0.9133795	370.7997		18.615143	0.0055604	0.0017203	0.00015869	NaN	14.042	189	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24083			1108	2630	684	695							-0.010219105375199433
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7663744894501	2	513.766374	1025.5182	2.1481	0.0011036	-4.2156	-0.0021658	-2.0674	-0.0010622	513.7642747420449	28.243	0.1689	28.243	28.194	28.363	0	1305	88	0.83389086	0.053498566	0.83389086	338.49353	0	21.716156						186	8	3	NaN	NaN	NaN	0.10956	1	9596	9596		34.439	13.883	1	40863			1109	5201	685	696	827	827					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7663744894501	2	513.766374	1025.5182	0.95155	0.00048887	-5.2218	-0.0026828	-4.2703	-0.0021939	513.7641326327791	28.242	0.2172	28.233	28.161	28.378	-0.0089779	1302	82	0.8357362	0.049792826	0.8342168	339.2426	0	20.211945						201	10	2	NaN	NaN	NaN	0.028349	1	9408	9408		61.271	14.135	1	48822			1110	5201	685	696	828	828					0.0064576755189591495
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.76617752420003	2	482.766178	963.517802	2.3478	0.0011334	-2.0094	-0.00097007	0.33838	0.00016336	482.76527994132266	18.772	0.312	18.772	18.676	18.988	0	1269	103	0.8560222	0.06272584	0.8560222	347.77304	0	25.483398						542	14	2	NaN	NaN	NaN	0.16059	1	7442	7442		27.861	6.0257	1	75946			1111	2565	686	697	829	829					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.76617752420003	2	482.766178	963.517802	2.2734	0.0010975	-2.0805	-0.0010044	0.19282	9.3086E-05	482.7652915160921	18.794	0.33626	18.78	18.684	19.02	-0.014061	1326	103	0.8209676	0.06272584	0.81944823	333.53156	0	25.483398						543	15	2	NaN	NaN	NaN	0.10053	1	7289	7289		35.745	10.784	1	69603			1112	2565	686	697	830	830					0.03458392622712836
AYAPQGWIAFF	11	Unmodified	_AYAPQGWIAFF_					0	0	0		FUBP1-USP33|2|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.8163986872501	2	635.816399	1269.61824	1.6828	0.00107	-2.2815	-0.0014506	-0.59872	-0.00038067	635.815130177535	36.688	0.24068	36.688	36.639	36.88	0	1143	76	0.9332562	0.045846224	0.9332562	377.8618	0	18.56247						533	11	4	NaN	NaN	NaN	0.017073	1	18229	18229		63.958	42.187	1	74554			1113	7804	687	698	831	831					-0.005779951143040307
AYAPQGWIAFF	11	Unmodified	_AYAPQGWIAFF_					0	0	0		FUBP1-USP33|2|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;ENST00000461986.5_1_1:78183501-78187881:-|nuORF;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.8163986872501	2	635.816399	1269.61824	1.5734	0.0010004	-1.8072	-0.0011491	-0.23379	-0.00014865	635.8155082205	36.709	0.24059	36.711	36.615	36.856	0.0016747	1143	79	0.9332562	0.047677517	0.93173677	377.8618	0	19.303925						461	11	3	NaN	NaN	NaN	0.079637	1	17409	17409		42.318	26.855	1	66034			1114	7804	687	698	832	832					-0.005779951143040307
AYAQLAYLVF	10	Unmodified	_AYAQLAYLVF_					0	0	0		ENST00000511337.5_1_4:88973244-88983097:+|nuORF;nc|ENSG00000118762|Q13563-4|PKD2;PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant;nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	ENST00000511337.5_1_4:88973244-88983097:+|nuORF	ENST00000511337.5_1_4:88973244-88983097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.81332468205	2	579.813325	1157.6121	1.4788	0.00085741	-2.4618	-0.0014274	-0.98303	-0.00056997	579.8115800169475	34.806	0.21705	34.806	34.758	34.975	0	1209	52	0.892844	0.03125626	0.892844	361.87558	0	12.668396						265	10	4	NaN	NaN	NaN	0.091497	1	15074	15074		47.136	28.017	1	41307			1115	2192	688	699	833	833					0.039594866541847296
AYAQLAYLVF	10	Unmodified	_AYAQLAYLVF_					0	0	0		ENST00000511337.5_1_4:88973244-88983097:+|nuORF;nc|ENSG00000118762|Q13563-4|PKD2;PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant;nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	ENST00000511337.5_1_4:88973244-88983097:+|nuORF	ENST00000511337.5_1_4:88973244-88983097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.81332468205	2	579.813325	1157.6121	1.3342	0.00077359	-1.924	-0.0011156	-0.58984	-0.000342	579.8121945277662	34.805	0.21698	34.804	34.756	34.973	-0.0006485	1206	55	0.894683	0.03309667	0.89316356	362.62094	0	13.414307						293	10	4	NaN	NaN	NaN	0.091497	1	14576	14576		47.136	26.58	1	41752			1116	2192	688	699	834	834					0.039594866541847296
AYARIGNSYF	10	Unmodified	_AYARIGNSYF_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2880053885501	2	581.288005	1160.56146	1.1764	0.00068385	-6.4585	-0.0037543	-5.2821	-0.0030704	581.2838867456347	21.007	0.2407	20.993	20.897	21.138	-0.014086	1206	82	0.894683	0.04964775	0.89316356	362.6101	0	20.121948						299	11	3	NaN	NaN	NaN	0.24484	1	14645	14645		31.675	15.091	1	43844			1117	4620	689	700	835	835					-0.012400426707927181
AYARIGNSYF	10	Unmodified						0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.288005	1160.56146	1.6178	0.0009404	-4.629	-0.0026908	-3.0112	-0.0017504	581.284230137421	20.983	0.07214	20.983	20.959	21.031	0	1206	85	0.894683	0.051472604	0.894683	362.6101		20.861542	-0.0050762	0.0011329	0.00075972	NaN	31.675	143	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31987			1118	4620	689	700							-0.012400426707927181
AYASFIDAF	9	Unmodified	_AYASFIDAF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4723743093001	1	1004.47237	1003.4651	1.0257	0.0010303	2.2374	0.0022474	3.2631	0.0032777	1004.4745711804142	31.259	0.19305	31.259	31.235	31.428	0	195	82	1.5033154	0.047903895	1.5033154	305.20633	0	9.725555						322	9	3	NaN	NaN	NaN	0.049695	1	8714	8714		47.04	15.479	1	54471			1119	4261	690	701	836	836					-0.03649610230752387
AYASFIDAF	9	Unmodified	_AYASFIDAF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4723743093001	1	1004.47237	1003.4651	1.1702	0.0011754	2.2623	0.0022724	3.4324	0.0034478	1004.47479780538	31.258	0.16892	31.253	31.229	31.398	-0.0050716	192	73	1.5050892	0.042569995	1.5035697	305.56644	0	8.642639						301	8	4	NaN	NaN	NaN	0.14945	1	8538	8538		28.667	13.491	1	49534			1120	4261	690	701	837	837					-0.03649610230752387
AYATFIVTNYW	11	Unmodified	_AYATFIVTNYW_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1;ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.8322457167001	2	674.832246	1347.64994	0.82285	0.00055529	-4.3326	-0.0029238	-3.5098	-0.0023685	674.829158787988	33.19	0.3137	33.19	33.069	33.383	0	1101	106	0.95892316	0.06412244	0.95892316	388.01196	0	25.946045						588	14	4	NaN	NaN	NaN	0.076968	1	19512	19512		42.995	29.046	1	92158			1121	3809	691	702	838	838					-0.009980471510061761
AYATFIVTNYW	11	Unmodified	_AYATFIVTNYW_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1;ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.8322457167001	2	674.832246	1347.64994	0.60084	0.00040546	-4.0433	-0.0027285	-3.4424	-0.0023231	674.8289911275311	33.213	0.21716	33.21	33.114	33.331	-0.0024757	1095	91	0.9625867	0.054953218	0.96106726	389.49435	0	22.23587						588	10	5	NaN	NaN	NaN	0.036982	1	18645	18645		53.14	36.282	1	86864			1122	3809	691	702	839	839					-0.009980471510061761
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.1870317462	3	361.187032	1080.53927	2.5506	0.00092125	-2.5926	-0.00093642	-0.04202	-1.5177E-05	361.18606556819964	18.173	0.26389	18.173	18.125	18.388	0	1443	64	0.7487872	0.038954973	0.7487872	455.60938	0	23.702667						474	12	4	NaN	NaN	NaN	0.055351	1	12003	12003		32.778	14.545	1	266310			1123	1845	692	703	840	840					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.276909386	2	541.276909	1080.53927	2.5545	0.0013827	-2.3461	-0.0012699	0.20832	0.00011276	541.2760705647688	18.173	0.28789	18.173	18.125	18.412	0	1278	88	0.85049206	0.053429186	0.85049206	344.9994	0	21.67337						700	13	4	NaN	NaN	NaN	0.0073225	1	12004	12004		97.85	42.437	1	286650			1124	1845	692	703	841	841					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.276909386	2	541.276909	1080.53927	2.4865	0.0013459	-2.1681	-0.0011736	0.31836	0.00017232	541.2760249010947	18.338	0.2641	18.324	18.228	18.492	-0.01395	1278	103	0.85049206	0.06265128	0.8489726	344.9994	0	25.414276						858	12	5	NaN	NaN	NaN	0.0042638	1	11689	11689		104.2	59.56	1	310560			1125	1845	692	703	842	842					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.1870317462	3	361.187032	1080.53927	2.7657	0.00099892	-2.4443	-0.00088286	0.32133	0.00011606	361.1861334312563	18.338	0.33602	18.324	18.228	18.564	-0.01395	1440	70	0.7506418	0.042664945	0.7491224	456.73782	0	25.960052						557	15	4	NaN	NaN	NaN	0.13602	1	11690	11690		21.85	6.9964	1	284630			1126	1845	692	703	843	843					0.0022177765142714634
AYAVLYDII	9	Unmodified	_AYAVLYDII_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5662746945	1	1040.56627	1039.559	0.91754	0.00095477	7.8648	0.0081839	8.7824	0.0091386	1040.5768046563646	33.673	0.16895	33.673	33.6	33.769	0	87	136	1.5670487	0.07961166	1.5670487	317.99582	0	16.155334						432	8	3	NaN	NaN	NaN	0.22308	1	10206	10206		23.85	0.51602	1	52243			1127	1084	693	704	844	844					0.04080108871517041
AYDAIGELF	9	Unmodified	_AYDAIGELF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4829389956001	1	998.482939	997.475663	1.0943	0.0010926	0.77244	0.00077126	1.8667	0.0018639	998.4826464390993	31.211	0.12066	31.211	31.163	31.284	0	216	103	1.4908947	0.06033945	1.4908947	302.70926	0	12.251251						256	6	3	NaN	NaN	NaN	0.18779	1	8472	8472		26.115	8.316	1	21784			1128	5138	694	705	845	845					-0.02317627576326231
AYDAIGELF	9	Unmodified	_AYDAIGELF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4829389956001	1	998.482939	997.475663	1.2249	0.001223	0.60757	0.00060665	1.8325	0.0018297	998.4822376666278	31.186	0.14481	31.181	31.157	31.302	-0.0050716	216	91	1.4908947	0.05325198	1.4893752	302.70926	0	10.812195						262	7	3	NaN	NaN	NaN	0.29681	1	8295	8295		19.118	2.7017	1	23414			1129	5138	694	705	846	846					-0.02317627576326231
AYDSDYAVL	9	Unmodified	_AYDSDYAVL_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.4571181755999	1	1016.45712	1015.44984	2.6433	0.0026868	-0.17208	-0.00017491	2.4712	0.0025118	1016.4566934925273	23.055	0.21678	23.055	23.007	23.224	0	261	55	1.4642475	0.03200209	1.4642475	297.2271	0	6.4960938						236	10	3	NaN	NaN	NaN	0.056143	1	9183	9183		44.302	8.266	1	27835	+		1130	8484	695	706	847	847					-0.05726521818621677
AYDSDYAVL	9	Unmodified	_AYDSDYAVL_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4571181755999	1	1016.45712	1015.44984	1.9752	0.0020077	-0.0015884	-1.6145E-06	1.9736	0.0020061	1016.4571521625459	23.055	0.16868	23.041	23.017	23.186	-0.013294	258	55	1.4660252	0.03200209	1.4645058	297.58798	0	6.4960938						199	8	3	NaN	NaN	NaN	0.03623	1	9003	9003		52.758	2.9254	1	26435	+		1131	8484	695	706	848	848					-0.05726521818621677
AYDSDYAVL	9	Unmodified						0	0	0			REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.45712	1015.44984	2.6433	0.0026868	-0.17208	-0.00017491	2.4712	0.0025118	1016.4566934925273	23.055	0.21678	23.055	23.007	23.224	0	261	55	1.4642475	0.03200209	1.4642475	297.2271		6.4960938	0.0069331	-7.5322E-05	-0.00012918	NaN	52.758	236	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27835	+		1132	8484	695	706							-0.05726521818621677
AYDSDYAVL	9	Unmodified						0	0	0			REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1016.45712	1015.44984	1.9752	0.0020077	-0.0015884	-1.6145E-06	1.9736	0.0020061	1016.4571521625459	23.055	0.16868	23.041	23.017	23.186	-0.013294	258	55	1.4660252	0.03200209	1.4645058	297.58798		6.4960938	-0.0069331	9.7974E-05	0.00012918	NaN	52.758	199	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26435	+		1133	8484	695	706							-0.05726521818621677
AYDTGNYICKA	11	Unmodified	_AYDTGNYICKA_					0	0	0		IGSF10|p.R2501T|1|0.23|ENSG00000152580|chr3:151437059-151437059|C/G|missense_variant	IGSF10|p.R2501T|1|0.23|ENSG00000152580|chr3:151437059-151437059|C/G|missense_variant	IGSF10|p.R2501T|1|0.23|ENSG00000152580|chr3:151437059-151437059|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.77661321225	2	609.776613	1217.53867	1.0002	0.00060992	-4.9893	-0.0030423	-3.989	-0.0024324	610.2746194054812	21.464	0.21691	21.45	21.378	21.595	-0.014006	1176	61	0.9130621	0.036738336	0.91154265	369.8556	0	14.881653						278	10	4	NaN	NaN	NaN	0.37105	1	16248	16248		23.086	1.3147	1	28449			1134	7821	696	707	849	849					-0.06139429850600209
AYDTLPVLI	9	Unmodified	_AYDTLPVLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5662746945001	1	1004.56627	1003.559	1.2849	0.0012908	0.38767	0.00038944	1.6726	0.0016802	1004.5661690701583	32.972	0.096497	32.969	32.921	33.018	-0.0024757	111	67	1.5529068	0.038923264	1.5513873	315.27408	0	7.9022827						145	5	3	NaN	NaN	NaN	0.056143	1	8569	8569		44.302	12.741	1	12405			1135	946	697	708	850	850					0.057361088715197184
AYDTLPVLI	9	Unmodified						0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1004.56627	1003.559	1.2231	0.0012287	0.55287	0.00055539	1.776	0.0017841	1004.5664284154112	32.973	0.096546	32.973	32.925	33.021	0	114	70	1.5511382	0.040694714	1.5511382	314.915		8.261932	0.0017896	6.9866E-05	-0.00012457	NaN	44.302	130	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14231			1136	946	697	708							0.057361088715197184
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.78001318095	2	593.780013	1185.54547	1.3693	0.00081308	-1.0766	-0.00063923	0.29277	0.00017384	593.7800039348092	26.601	0.14483	26.601	26.529	26.674	0	1197	52	0.9001988	0.031246126	0.9001988	364.7553	0	12.660767						151	7	2	NaN	NaN	NaN	0.3106	1	16020	16020		18.233	9.9887	1	20691			1137	5051	698	709	851	851					-0.039877489077071004
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.78001318095	2	593.780013	1185.54547	2.2006	0.0013067	0.50907	0.00030228	2.7097	0.001609	593.7802106920151	25.346	0.45842	25.346	25.226	25.684	0	1200	109	0.89836043	0.06615049	0.89836043	364.0104	0	26.803802						914	20	4	NaN	NaN	NaN	0.0014219	1	16022	16022		112.76	67.596	1	843390			1138	5051	698	709	852	852					-0.039877489077071004
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.78001318095	2	593.780013	1185.54547	2.2134	0.0013143	1.2234	0.00072646	3.4368	0.0020407	593.7806170442921	25.346	0.43424	25.334	25.262	25.696	-0.012011	1200	106	0.89836043	0.06430256	0.896841	364.0104	0	26.055023						1065	19	5	NaN	NaN	NaN	0.00016172	1	15410	15410		119.15	73.986	1	851680			1139	5051	698	709	853	853					-0.039877489077071004
AYDTVRWEF	9	Unmodified						0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.780013	1185.54547	0.76744	0.00045569	-0.9097	-0.00054016	-0.14226	-8.4474E-05	593.7799671232148	26.697	0.21719	26.687	26.542	26.759	-0.010645	1194	52	0.902037	0.031242788	0.9005176	365.50015		12.659393	0.042777	0.00010299	0.00015938	NaN	18.233	198	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30780			1140	5051	698	709							-0.039877489077071004
AYDVLFHQW	9	Unmodified	_AYDVLFHQW_					0	0	0		nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENSG00000179832|ENST00000326134|MROH1	nc|ENSG00000179832|Q8NDA8-6|MROH1	nc|ENSG00000179832|Q8NDA8-6|MROH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7850985588501	2	589.785099	1177.55564	1.4441	0.0008517	0.29347	0.00017308	1.7376	0.0010248	589.7846281567132	27.109	0.096529	27.109	27.06	27.157	0	1176	85	0.9130621	0.05144483	0.9130621	369.9963	0	20.846771						193	5	2	NaN	NaN	NaN	0.021751	1	15740	15740		69.782	43.667	1	63850			1141	5169	699	710	854	854					-0.026031411824760653
AYDVLFHQW	9	Unmodified	_AYDVLFHQW_					0	0	0		nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENSG00000179832|ENST00000326134|MROH1	nc|ENSG00000179832|Q8NDA8-6|MROH1	nc|ENSG00000179832|Q8NDA8-6|MROH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7850985588501	2	589.785099	1177.55564	0.97013	0.00057217	1.9353	0.0011414	2.9054	0.0017136	589.7862374172114	27.132	0.16893	27.122	27.074	27.242	-0.010126	1176	73	0.9130621	0.044090807	0.91154265	369.9963	0	17.86673						257	8	2	NaN	NaN	NaN	0.0094682	1	15168	15168		93.472	56.241	1	66976			1142	5169	699	710	855	855					-0.026031411824760653
AYEHKFYEI	9	Unmodified	_AYEHKFYEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2902137265002	2	600.290214	1198.56587	1.8855	0.0011319	-0.37969	-0.00022793	1.5058	0.00090393	600.2902355230386	18.292	0.14399	18.292	18.268	18.412	0	1149	67	0.92958635	0.040394723	0.92958635	376.61588	0	16.365692						136	7	2	NaN	NaN	NaN	0.14227	1	16420	16420		29.706	13.122	1	14213			1143	1463	700	711	856	856					-0.025465782478931942
AYEHKFYEI	9	Unmodified	_AYEHKFYEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.2902137265002	2	600.290214	1198.56587	1.618	0.00097124	0.56295	0.00033793	2.1809	0.0013092	600.290190540669	18.434	0.14411	18.42	18.348	18.492	-0.01395	1149	58	0.92958635	0.034880698	0.9280669	376.61588	0	14.131714						131	7	2	NaN	NaN	NaN	0.055363	1	15775	15775		44.633	18.519	1	14689			1144	1463	700	711	857	857					-0.025465782478931942
AYEIHLEQ	8	Unmodified	_AYEIHLEQ_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.7481817363	2	501.748182	1001.48181	1.7683	0.00088724	4.2306	0.0021227	5.9989	0.00301	501.7503584896457	26.505	0.048262	26.505	26.481	26.529	0	1263	55	0.85970795	0.033161104	0.85970795	349.0841	0	13.465057						94	3	3	NaN	NaN	NaN	0.72043	1	8647	8647		17.78	1.3637	1	12164			1145	4731	701	712	858	858					-0.018871093448069587
AYEIHLEQ	8	Unmodified						0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.748182	1001.48181	1.2504	0.0006274	4.7952	0.002406	6.0456	0.0030334	501.75100400486696	26.504	0.072378	26.494	26.47	26.542	-0.010645	1263	40	0.85970795	0.023953617	0.8581885	349.0841		9.726349	-0.0054718	0.00032664	-0.00075972	NaN	17.78	95	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10552			1146	4731	701	712							-0.018871093448069587
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.2793146892001	2	573.279315	1144.54408	1.4108	0.00080881	-3.0382	-0.0017417	-1.6273	-0.00093292	573.2779705675453	34.155	0.21711	34.155	34.083	34.3	0	1221	70	0.885486	0.042306185	0.885486	358.9416	0	17.149292						512	10	5	NaN	NaN	NaN	0.032826	1	14605	14605		55.413	13.095	1	112650			1147	5468	702	713	859	859					-0.022413829964762044
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1145.5513529118	1	1145.55135	1144.54408	2.3006	0.0026355	-0.33812	-0.00038734	1.9625	0.0022481	1145.5509015276812	34.155	0.1447	34.155	34.107	34.252	0	63	73	1.5811787	0.04238534	1.5811787	320.4775	0	8.59079						324	7	4	NaN	NaN	NaN	0.02857	1	14607	14607		60.982	28.529	1	40625			1148	5468	702	713	860	860					-0.022413829964762044
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2793146892001	2	573.279315	1144.54408	0.99648	0.00057126	-1.7801	-0.0010205	-0.78366	-0.00044926	573.2793979224219	34.154	0.19307	34.153	34.105	34.298	-0.0012474	1221	79	0.885486	0.04782182	0.88396657	358.9416	0	19.385101						463	9	5	NaN	NaN	NaN	0.019103	1	14127	14127		73.133	25.997	1	103040			1149	5468	702	713	861	861					-0.022413829964762044
AYEILFLP	8	Unmodified	_AYEILFLP_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|236|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|236|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.2707613756	2	483.270761	964.52697	1.6652	0.00080476	-4.5454	-0.0021967	-2.8802	-0.0013919	483.2698797122939	20.477	0.072128	20.477	20.429	20.501	0	1506	31	0.70979416	0.018589258	0.70979416	288.3613	0	7.5520935						46	4	2	NaN	NaN	NaN	0.84207	1	7471	7471		3.5732	0	1	3444.9	+		1150	13038	703	714	862	862					0.04328741188373897
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.27677200025	2	599.276772	1196.53899	1.3484	0.00080807	-3.943	-0.0023629	-2.5946	-0.0015549	599.7755311586001	29.329	0.21723	29.329	29.28	29.498	0	1185	109	0.90755045	0.066200554	0.90755045	367.6953	0	26.821228						591	10	4	NaN	NaN	NaN	0.024221	1	16349	16349		66.656	19.521	1	151960			1151	4276	704	715	863	863					-0.05141686859087713
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.27677200025	2	599.276772	1196.53899	0.97825	0.00058624	-3.3216	-0.0019906	-2.3434	-0.0014043	599.2764432833095	29.328	0.19305	29.32	29.272	29.465	-0.0077209	1182	100	0.9093879	0.060654342	0.90786844	368.43973	0	24.574188						427	9	4	NaN	NaN	NaN	0.070055	1	15705	15705		40.154	18.383	1	144600			1152	4276	704	715	864	864					-0.05141686859087713
AYFDFPELL	9	Unmodified	_AYFDFPELL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7764078595001	2	557.776408	1113.53826	1.6883	0.00094167	-0.1605	-8.952E-05	1.5278	0.00085215	557.7763365120154	36.543	0.24114	36.543	36.446	36.688	0	1203	109	0.8965218	0.06626499	0.8965218	363.5355	0	26.870148						883	11	4	NaN	NaN	NaN	0.0047854	1	13418	13418		103.03	55.89	1	293060			1153	5222	705	716	865	865					-0.013964815081408233
AYFDFPELL	9	Unmodified	_AYFDFPELL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7764078595001	2	557.776408	1113.53826	1.7853	0.00099581	0.55672	0.00031052	2.342	0.0013063	557.7770658684387	36.541	0.24083	36.543	36.47	36.711	0.0016785	1200	112	0.89836043	0.06809461	0.896841	364.28104	0	27.61206						854	11	4	NaN	NaN	NaN	0.025843	1	13038	13038		64.55	32.097	1	258290			1154	5222	705	716	866	866					-0.013964815081408233
AYFDVIEEID	10	Unmodified	_AYFDVIEEID_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.2847939976001	2	607.284794	1212.55504	0.51035	0.00030993	2.4432	0.0014837	2.9535	0.0017936	607.286571352659	20.839	0.072128	20.825	20.776	20.849	-0.014086	1197	61	0.9001988	0.036762178	0.8986794	364.66183	0	14.891998						116	4	2	NaN	NaN	NaN	0.71736	1	16115	16115		6.8632	0.43328	1	19638			1155	765	706	717	867	867					-0.042740254128375454
AYFDVPELI	9	Unmodified	_AYFDVPELI_					0	0	0		nc|ENSG00000115295|Q8N3C7-4|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7764078595001	2	533.776408	1065.53826	0.47182	0.00025185	-0.69774	-0.00037244	-0.22592	-0.00012059	533.7757689310881	33.816	0.07243	33.814	33.79	33.863	-0.0018463	1245	43	0.87076044	0.025783658	0.869241	353.28378	0	10.460907						79	4	2	NaN	NaN	NaN	0.3389	1	11103	11103		16.417	8.8763	1	9295.1			1156	2013	707	718	868	868					0.008115184918551677
AYFKRYQVKF	10	Unmodified	_AYFKRYQVKF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.5836737579999	3	450.583674	1348.72919	1.5129	0.00068168	-0.29698	-0.00013381	1.2159	0.00054787	450.583671928453	17.933	0.095945	17.933	17.885	17.981	0	1446	70	0.7469324	0.042660296	0.7469324	453.34314	0	25.892242						174	5	3	NaN	NaN	NaN	0.6262	1	19533	19533		13.101	1.634	1	19817			1157	2321	708	719	869	869					0.06877644593782861
AYFLKPKEL	9	Unmodified	_AYFLKPKEL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8236924031	2	554.823692	1107.63283	1.4061	0.00078013	-0.73146	-0.00040583	0.67462	0.0003743	554.8231293701272	19.084	0.09594	19.084	19.036	19.132	0	1197	43	0.9001988	0.025736272	0.9001988	365.0503	0	10.436615						117	5	3	NaN	NaN	NaN	0.10945	1	13193	13193		34.454	11.12	1	14743			1158	2911	709	720	870	870					0.0833207703383323
AYFLKPKEL	9	Unmodified	_AYFLKPKEL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.8236924031	2	554.823692	1107.63283	1.4792	0.00082072	-0.75661	-0.00041979	0.72262	0.00040093	554.8234692864227	19.226	0.12018	19.212	19.164	19.284	-0.014141	1197	43	0.9001988	0.025736272	0.8986794	365.0503	0	10.436615						164	6	3	NaN	NaN	NaN	0.041983	1	12820	12820		50.315	31.152	1	18121			1159	2911	709	720	871	871					0.0833207703383323
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.74236807690005	2	500.742368	999.470183	1.42	0.00071108	0.10966	5.491E-05	1.5297	0.00076599	500.7430143658142	32.635	0.072433	32.635	32.587	32.659	0	1314	31	0.8283535	0.018456757	0.8283535	336.36185	0	7.494568						55	4	2	NaN	NaN	NaN	0.27293	1	8562	8562		44.247	24.962	1	4579.9			1160	3097	710	721	872	872					-0.029573063681368694
AYFNFPEL	8	Unmodified						0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.742368	999.470183	1.2488	0.00062531	-1.0704	-0.000536	0.17836	8.931E-05	500.74127668981396	32.634	0.096539	32.631	32.607	32.703	-0.0031052	1305	37	0.83389086	0.022143304	0.8323714	338.61032		8.991516	-0.0020926	-0.00051008	0.0020089	NaN	44.247	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4497.2			1161	3097	710	721							-0.029573063681368694
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2844000671001	2	557.2844	1112.55425	1.8542	0.0010333	-1.0018	-0.00055827	0.85242	0.00047504	557.2837719253445	35.82	0.40989	35.82	35.747	36.157	0	1215	115	0.8891654	0.06990099	0.8891654	360.5564	0	28.344849						1315	18	6	NaN	NaN	NaN	8.7755E-05	1	13376	13376		123.66	62.676	1	2276500			1162	3097	711	722	873	873					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1113.5615236676	1	1113.56152	1112.55425	1.5292	0.0017028	0.34875	0.00038836	1.8779	0.0020912	1113.561210716107	35.82	0.072308	35.82	35.795	35.868	0	648	163	1.2333171	0.09715891	1.2333171	250.0577	0	19.699158						312	4	3	NaN	NaN	NaN	0.0084155	1	13377	13377		95.62	48.579	1	27420			1163	3097	711	722	874	874					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1113.5615236676	1	1113.56152	1112.55425	1.7143	0.001909	0.28021	0.00031204	1.9945	0.002221	1113.561108540864	35.844	0.19279	35.844	35.771	35.964	0	57	202	1.5847093	0.11855829	1.5847093	321.30322	0	24.037964						543	9	4	NaN	NaN	NaN	0.012495	1	13378	13378		85.344	38.304	1	95848			1164	3097	711	722	875	875					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2844000671001	2	557.2844	1112.55425	1.2354	0.00068849	-1.7651	-0.00098367	-0.52967	-0.00029518	557.2834270564291	36.902	0.31265	36.904	36.856	37.169	0.0022469	1203	79	0.8965218	0.04783213	0.89500237	363.53943	0	19.395935						573	14	4	NaN	NaN	NaN	0.23112	1	12995	12995		23.334	10.747	1	88772			1165	3097	711	722	876	876					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2844000671001	2	557.2844	1112.55425	2.057	0.0011463	-0.98017	-0.00054623	1.0768	0.00060011	557.2837311513166	35.818	0.33744	35.819	35.746	36.084	0.00052643	1212	127	0.8910048	0.07727569	0.88948536	361.30228	0	31.335297						1354	15	6	NaN	NaN	NaN	0.01452	1	12997	12997		79.199	39.74	1	2177000			1166	3097	711	722	877	877					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1113.5615236676	1	1113.56152	1112.55425	0.83907	0.00093436	0.3941	0.00043885	1.2332	0.0013732	1113.5621982416296	35.818	0.072296	35.819	35.794	35.867	0.00052643	648	136	1.2333171	0.08100462	1.2317977	250.0577	0	16.423859						270	4	3	NaN	NaN	NaN	0.0084155	1	12998	12998		95.62	39.672	1	26620			1167	3097	711	722	878	878					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1113.5615236676	1	1113.56152	1112.55425	1.0617	0.0011822	0.27449	0.00030566	1.3361	0.0014879	1113.5615378050288	35.818	0.16863	35.819	35.77	35.939	0.00052643	54	205	1.5864743	0.12033427	1.5849549	321.66107	0	24.39801						581	8	4	NaN	NaN	NaN	0.0034808	1	12999	12999		106.56	53.934	1	114550			1168	3097	711	722	879	879					0.002472247287641949
AYFNFPELL	9	Unmodified						0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.2844	1112.55425	1.4497	0.00080791	-2.5844	-0.0014402	-1.1346	-0.00063232	557.2832976178059	36.808	0.16838	36.808	36.712	36.88	0	1200	91	0.89836043	0.0552029	0.89836043	364.28497		22.384766	-0.048167	-0.00042316	0.001679	NaN	23.334	502	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113750			1169	3097	711	722							0.002472247287641949
AYFNFPELL	9	Unmodified						0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.2844	1112.55425	1.3293	0.00074083	-3.2799	-0.0018278	-1.9505	-0.001087	557.282189079475	36.131	0.1205	36.132	36.108	36.229	0.0011024	1218	70	0.8873258	0.042310774	0.8858064	359.81046		17.157013	0.15646	-0.002375	-0.0016795	NaN	123.66	160	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20961			1170	3097	711	722							0.002472247287641949
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8029569610001	2	592.802957	1183.59136	1.0175	0.00060315	-2.5282	-0.0014987	-1.5108	-0.0008956	592.8010574643665	34.975	0.31353	34.975	34.879	35.192	0	1176	67	0.9130621	0.04042095	0.9130621	369.9745	0	16.378662						632	14	5	NaN	NaN	NaN	0.0025223	1	15961	15961		84.233	47.998	1	161220			1171	4307	712	723	880	880					0.006908962745228564
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8029569610001	2	592.802957	1183.59136	1.0455	0.00061978	-2.0275	-0.0012019	-0.982	-0.00058213	592.8014443912224	34.974	0.21713	34.974	34.877	35.094	-4.5776E-05	1176	70	0.9130621	0.042255938	0.91154265	369.97446	0	17.122192						546	10	5	NaN	NaN	NaN	0.026555	1	15354	15354		60.982	43.183	1	150080			1172	4307	712	723	881	881					0.006908962745228564
AYFPELIANF	10	Unmodified						0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.802957	1183.59136	1.9197	0.001138	-1.3983	-0.0008289	0.5214	0.00030909	592.8011751381881	34.829	0.04821	34.828	34.804	34.853	-0.0006485	1161	31	0.9222442	0.018359244	0.92072475	373.69507		7.439209	-0.073396	0.0012355	0.0038313	NaN	84.233	47	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2446.3			1173	4307	712	723							0.006908962745228564
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		LIMK2-ATXN10|2|fusion;nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2-ATXN10|2|fusion	LIMK2-ATXN10|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.27710635125	2	560.277106	1118.53966	1.6704	0.0009359	-0.039364	-2.2055E-05	1.6311	0.00091384	560.2771661592028	24.695	0.3377	24.682	24.634	24.972	-0.012392	1218	91	0.8873258	0.05519694	0.8858064	359.7869	0	22.38086						650	15	5	NaN	NaN	NaN	0.024359	1	13210	13210		66.481	27.563	1	296830			1174	7862	713	724	882	882					-0.014868474193917791
AYFTSRDLF	9	Unmodified						0	0	0		LIMK2-ATXN10|2|fusion;nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	LIMK2-ATXN10|2|fusion	LIMK2-ATXN10|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.277106	1118.53966	1.855	0.0010393	-0.80247	-0.0004496	1.0525	0.00058971	560.2763842983576	24.671	0.28953	24.671	24.647	24.936	0	1218	91	0.8873258	0.05519694	0.8873258	359.7869		22.38086	-0.0057888	-0.00055137	0.00075972	NaN	66.481	616	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318420			1175	7862	713	724							-0.014868474193917791
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4618096230001	1	962.46181	961.454533	1.3519	0.0013011	-0.85063	-0.0008187	0.50123	0.00048241	962.4628527442185	31.091	0.33788	31.091	31.042	31.38	0	255	211	1.4678029	0.124678135	1.4678029	298.1729	0	25.327362						1063	15	4	NaN	NaN	NaN	0.011942	1	7359	7359		87.021	11.322	1	621400			1176	4033	714	725	883	883					-0.02773592885182552
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4618096230001	1	962.46181	961.454533	1.8512	0.0017817	0.044843	4.316E-05	1.896	0.0018248	962.4618903037107	31.089	0.38614	31.084	30.988	31.374	-0.0050716	255	184	1.4678029	0.10860753	1.4662834	298.17288	0	22.062805						852	17	2	NaN	NaN	NaN	0.014046	1	7214	7214		80.639	27.859	1	615000			1177	4033	714	725	884	884					-0.02773592885182552
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5349745661001	1	1012.53497	1011.5277	1.5092	0.0015282	0.04425	4.4804E-05	1.5535	0.001573	1012.5349517735763	33.287	0.2896	33.287	33.214	33.504	0	177	145	1.5139546	0.08512199	1.5139546	307.3331	0	17.279785						695	13	3	NaN	NaN	NaN	0.014943	1	9045	9045		78.398	17.127	1	233470			1178	1325	715	726	885	885					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.77112551635	2	506.771126	1011.5277	0.58394	0.00029592	-2.0786	-0.0010534	-1.4946	-0.00075743	506.7703610038023	33.285	0.14477	33.283	33.235	33.379	-0.0024757	1329	73	0.81912065	0.0443058	0.8176012	332.5589	0	17.987946						201	7	3	NaN	NaN	NaN	0.12945	1	8871	8871		31.561	11.112	1	27060			1179	1325	715	726	886	886					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5349745661001	1	1012.53497	1011.5277	1.4522	0.0014704	0.88178	0.00089283	2.334	0.0023632	1012.5359742385841	33.285	0.26542	33.283	33.235	33.5	-0.0024757	174	160	1.5157272	0.09401381	1.5142077	307.69293	0	19.084808						670	12	3	NaN	NaN	NaN	0.014943	1	8872	8872		78.398	25.774	1	230060			1180	1325	715	726	887	887					0.022395358374296848
AYGDIILTF	9	Unmodified						0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.771126	1011.5277	1.002	0.00050776	-2.7401	-0.0013886	-1.7381	-0.00088083	506.76985873912025	33.287	0.1448	33.287	33.238	33.383	0	1332	76	0.8172735	0.046149373	0.8172735	331.80896		18.73642	0.0018964	-0.00025543	-0.00016387	NaN	31.561	216	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29242			1181	1325	715	726							0.022395358374296848
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4355948725	1	966.435595	965.428318	2.1619	0.0020893	-0.12101	-0.00011695	2.0408	0.0019723	966.4353284523174	28.484	0.38613	28.484	28.436	28.822	0	276	139	1.4553556	0.0818789	1.4553556	295.62714	0	16.63208						1044	17	4	NaN	NaN	NaN	0.033463	1	7487	7487		54.579	26.79	1	347860			1182	2515	716	727	888	888					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4355948725	1	966.435595	965.428318	1.8069	0.0017462	2.691	0.0026007	4.4978	0.0043469	966.4383476710115	29.86	0.14478	29.86	29.811	29.956	0	285	67	1.4500183	0.039142847	1.4500183	294.54294	0	7.9510803						215	7	2	NaN	NaN	NaN	0.16059	1	7488	7488		27.861	12.685	1	16015			1183	2515	716	727	889	889					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4355948725	1	966.435595	965.428318	1.5301	0.0014788	0.6714	0.00064887	2.2015	0.0021276	966.436171759738	28.507	0.36191	28.499	28.427	28.789	-0.0083485	273	160	1.4571344	0.09437394	1.4556149	295.98846	0	19.170197						1014	16	5	NaN	NaN	NaN	0.033463	1	7336	7336		54.579	29.618	1	339280			1184	2515	716	727	890	890					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4355948725	1	966.435595	965.428318	1.0986	0.0010618	6.3959	0.0061812	7.4945	0.0072429	966.4432747075534	30.269	0.096491	30.263	30.263	30.359	-0.0064106	273	55	1.4571344	0.03201914	1.4556149	295.98843	0	6.504059						87	5	2	NaN	NaN	NaN	0.26823	1	7339	7339		20.952	10.901	1	7867.1			1185	2515	716	727	891	891					-0.05577862056668437
AYGGAFYAF	9	Unmodified						0	0	0		ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENST00000527981.1_1_14:59945878-59946064:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	966.435595	965.428318	1.5564	0.0015041	-0.15216	-0.00014705	1.4042	0.0013571	966.4361690093244	29.979	0.024132	29.973	29.973	29.997	-0.0064087	270	49	1.458913	0.028461456	1.4573935	296.34973		5.781372	0.056657	-0.0018604	0.0036876	NaN	27.861	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3852.6			1186	2515	716	727							-0.05577862056668437
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.7403567042	2	560.740357	1119.46616	2.2877	0.0012828	-0.062847	-3.5241E-05	2.2249	0.0012476	560.7403585876727	22.67	0.26535	22.67	22.621	22.887	0	1206	91	0.894683	0.055179	0.894683	362.7664	0	22.373383						713	12	5	NaN	NaN	NaN	0.024986	1	13637	13637		65.672	29.086	1	378250			1187	810	717	728	892	892					-0.08879395861845296
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7403567042	2	560.740357	1119.46616	1.8864	0.0010578	-0.077353	-4.3375E-05	1.809	0.0010144	560.7403241533444	22.693	0.43392	22.68	22.607	23.041	-0.01354	1203	109	0.8965218	0.06622201	0.89500237	363.51196	0	26.850983						901	19	4	NaN	NaN	NaN	0.11467	1	13232	13232		33.698	3.6629	1	388860			1188	810	717	728	893	893					-0.08879395861845296
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2821917291501	2	532.282192	1062.54983	1.865	0.00099268	-2.7198	-0.0014477	-0.85484	-0.00045502	532.2803434115949	20.237	0.16828	20.237	20.213	20.381	0	1209	85	0.892844	0.051528275	0.892844	362.2565	0	20.906708						173	8	2	NaN	NaN	NaN	0.03533	1	11236	11236		53.14	28.239	1	67424			1189	5760	718	729	894	894					0.021057603058579843
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	355.1905533083	3	355.190553	1062.54983	1.65	0.00058606	-1.9526	-0.00069354	-0.30262	-0.00010749	355.18964509977997	20.237	0.16828	20.237	20.213	20.381	0	1455	52	0.7413668	0.03154522	0.7413668	451.19028	0	19.198181						200	8	4	NaN	NaN	NaN	0.12328	1	11237	11237		23.086	7.6231	1	39539			1190	5760	718	729	895	895					0.021057603058579843
AYGLDFYIL	9	Unmodified	_AYGLDFYIL_					0	0	0		ENST00000481453.5_1_16:418974-419244:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;ENSG00000086504|ENST00000199706|MRPL28	ENST00000481453.5_1_16:418974-419244:-|nuORF	ENST00000481453.5_1_16:418974-419244:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5506246303	1	1074.55062	1073.54335	1.6422	0.0017646	1.0282	0.0011049	2.6704	0.0028695	1074.5506797899573	36.085	0.24124	36.085	36.036	36.278	0	63	133	1.5811787	0.07778072	1.5811787	320.73016	0	15.777222						567	11	4	NaN	NaN	NaN	0.020004	1	11713	11713		71.993	24.953	1	149300			1191	986	719	730	896	896					0.009518223544773718
AYGLDFYIL	9	Unmodified	_AYGLDFYIL_					0	0	0		ENST00000481453.5_1_16:418974-419244:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;ENSG00000086504|ENST00000199706|MRPL28	ENST00000481453.5_1_16:418974-419244:-|nuORF	ENST00000481453.5_1_16:418974-419244:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5506246303	1	1074.55062	1073.54335	1.706	0.0018332	1.0481	0.0011262	2.7541	0.0029594	1074.550985617544	36.083	0.19277	36.084	36.036	36.229	0.0011024	63	133	1.5811787	0.0777725	1.5796592	320.73013	0	15.775543						555	9	4	NaN	NaN	NaN	0.020004	1	11411	11411		71.993	27.69	1	135370			1192	986	719	730	897	897					0.009518223544773718
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4774596872	1	928.47746	927.470183	2.2809	0.0021177	0.73978	0.00068687	3.0207	0.0028046	928.4783781785899	27.229	0.28962	27.229	27.181	27.471	0	288	208	1.4482387	0.12295568	1.4482387	294.35083	0	24.990417						1024	13	4	NaN	NaN	NaN	3.3858E-07	1	6540	6540		128.99	67.015	1	683160			1193	3933	720	731	898	898					0.00354693631857117
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4774596872	1	928.47746	927.470183	1.5053	0.0013977	0.29095	0.00027014	1.7963	0.0016678	928.4778464764643	27.228	0.28959	27.218	27.17	27.46	-0.010124	285	226	1.4500183	0.13369024	1.4484988	294.71252	0	27.17221						1026	13	4	NaN	NaN	NaN	0.002833	1	6414	6414		108.51	30.112	1	668420			1194	3933	720	731	899	899					0.00354693631857117
AYGNFFFFSFS	11	Unmodified	_AYGNFFFFSFS_					0	0	0		ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000498205.5_1_3:156260994-156266845:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.2980387586	2	667.298039	1332.58152	1.4782	0.00098643	-4.2009	-0.0028032	-2.7226	-0.0018168	667.2948138994185	34.685	0.1446	34.684	34.636	34.78	-0.0006485	1101	52	0.95892316	0.031148553	0.9574037	388.05652	0	12.605164						157	7	3	NaN	NaN	NaN	0.71564	1	18432	18432		6.4299	0	1	12313			1195	7301	721	732	900	900					-0.071462917308736
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4570585961001	1	975.457059	974.449782	2.1749	0.0021215	0.6479	0.00063199	2.8228	0.0027535	975.4578385366107	29.377	0.36202	29.377	29.305	29.667	0	264	175	1.4624695	0.10321677	1.4624695	297.03348	0	20.963745						1422	16	5	NaN	NaN	NaN	0.01452	1	7728	7728		79.199	17.928	1	654700			1196	2911;14025	722	733	901	901					-0.03846477027957462
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.4570585961001	1	975.457059	974.449782	2.0514	0.0020011	0.18727	0.00018268	2.2387	0.0021837	975.4574509809712	29.376	0.41018	29.368	29.296	29.706	-0.0077229	261	187	1.4642475	0.110358715	1.462728	297.3946	0	22.414276						1549	18	6	NaN	NaN	NaN	0.018156	1	7574	7574		74.332	24.499	1	654140			1197	2911;14025	722	733	902	902					-0.03846477027957462
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF	nc|ENSG00000137944|Q6YP21-3|KYAT3	nc|ENSG00000137944|Q6YP21-3|KYAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.4989234108001	1	985.498923	984.491647	2.147	0.0021159	-0.1265	-0.00012467	2.0205	0.0019912	985.4989841490417	28.894	0.31375	28.894	28.846	29.16	0	213	148	1.4926696	0.0870384	1.4926696	303.12415	0	17.675323						643	14	4	NaN	NaN	NaN	7.737099999999999E-36	1	8027	8027		187.3	106.66	1	178150			1198	3119	723	734	903	903					-0.0012192133942789951
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF	nc|ENSG00000137944|Q6YP21-3|KYAT3	nc|ENSG00000137944|Q6YP21-3|KYAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.4989234108001	1	985.498923	984.491647	1.7127	0.0016879	-0.005257	-5.1808E-06	1.7075	0.0016827	985.4987519226034	28.894	0.2896	28.885	28.837	29.127	-0.0083485	213	139	1.4926696	0.08169651	1.4911501	303.12415	0	16.590515						577	13	3	NaN	NaN	NaN	6.5392E-05	1	7855	7855		125.02	63.749	1	164870			1199	3119	723	734	904	904					-0.0012192133942789951
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.2268851882	2	479.226885	956.439217	1.7608	0.00084384	-1.4762	-0.00070742	0.28468	0.00013643	479.2262776080714	19.684	0.16813	19.684	19.636	19.804	0	1314	40	0.8283535	0.023997664	0.8283535	336.56723	0	9.750458						169	8	3	NaN	NaN	NaN	0.59262	1	7245	7245		25.752	10.576	1	18925			1200	1211	724	735	905	905					-0.04074459682385623
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		ENST00000514938.1_1_22:50943733-50944613:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	ENST00000514938.1_1_22:50943733-50944613:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.2268851882	2	479.226885	956.439217	1.5993	0.00076645	-0.67828	-0.00032505	0.92106	0.0004414	479.22664403837115	19.707	0.12026	19.693	19.669	19.789	-0.014141	1311	40	0.83019954	0.023997664	0.8286801	337.3173	0	9.750458						149	6	3	NaN	NaN	NaN	0.62311	1	7106	7106		23.85	7.4338	1	18633			1201	1211	724	735	906	906					-0.04074459682385623
AYGWVSATF	9	Unmodified	_AYGWVSATF_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4727086603	1	1001.47271	1000.46543	2.164	0.0021672	-0.3792	-0.00037976	1.7848	0.0017875	1001.4723886450963	28.798	0.36206	28.798	28.677	29.039	0	201	139	1.4997677	0.081679225	1.4997677	304.4984	0	16.583344						922	16	3	NaN	NaN	NaN	0.024986	1	8598	8598		65.672	24.212	1	367490			1202	3615	725	736	907	907					-0.03478190510918466
AYGWVSATF	9	Unmodified	_AYGWVSATF_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4727086603	1	1001.47271	1000.46543	1.8151	0.0018177	-0.14676	-0.00014697	1.6683	0.0016708	1001.4725132813275	28.797	0.3137	28.789	28.74	29.054	-0.0083504	201	136	1.4997677	0.079907775	1.4982482	304.4984	0	16.223694						624	14	2	NaN	NaN	NaN	3.1345E-12	1	8428	8428		151.07	106.43	1	330790			1203	3615	725	736	908	908					-0.03478190510918466
AYHLATCGYC	10	Unmodified	_AYHLATCGYC_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2282446339001	2	551.228245	1100.44194	1.2513	0.00068974	6.4134	0.0035353	7.6647	0.004225	551.2312413034142	29.666	0.12067	29.659	29.635	29.755	-0.0070648	1248	46	0.8689189	0.027626812	0.86739945	352.39386	0	11.204163						79	6	2	NaN	NaN	NaN	0.75966	1	12512	12512		3.9685	0.39873	1	7377.5	+		1204	10058	726	737	909	909					-0.10426695611386094
AYHLATCGYC	10	Unmodified						0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.228245	1100.44194	1.2868	0.00070929	10.533	0.0058059	11.819	0.0065152	551.2334378647039	29.667	0.09654	29.667	29.642	29.739	0	1248	40	0.8689189	0.023943245	0.8689189	352.39386		9.710266	0.003949	0.0017935	0.00075972	NaN	3.9685	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6676.7	+		1205	10058	726	737							-0.10426695611386094
AYHLATCGYC	10	Unmodified						0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	551.228245	1100.44194	1.2513	0.00068974	6.4134	0.0035353	7.6647	0.004225	551.2312413034142	29.666	0.12067	29.659	29.635	29.755	-0.0070648	1248	46	0.8689189	0.027626812	0.86739945	352.39386		11.204163	-0.003949	-0.0027478	-0.00075972	NaN	3.9685	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7377.5	+		1206	10058	726	737							-0.10426695611386094
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2483489118	2	518.248349	1034.48214	2.0857	0.0010809	-1.1034	-0.00057186	0.98227	0.00050906	518.2476775007387	16.662	0.28781	16.662	16.614	16.901	0	1263	85	0.85970795	0.051634252	0.85970795	348.93317	0	20.957						648	13	3	NaN	NaN	NaN	0.089764	1	9956	9956		37.302	15.467	1	91432			1207	131	727	738	910	910					-0.03371689624964347
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	ENST00000493660.5_1_17:38792069-38802054:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2483489118	2	518.248349	1034.48214	1.7639	0.00091412	-0.48825	-0.00025304	1.2756	0.00066109	518.2478782789672	16.683	0.33558	16.669	16.621	16.957	-0.013294	1263	97	0.85970795	0.05902332	0.8581885	348.93317	0	23.956024						486	15	2	NaN	NaN	NaN	0.026295	1	9750	9750		63.958	31.505	1	89220			1208	131	727	738	911	911					-0.03371689624964347
AYHPLGHQ	8	Unmodified	_AYHPLGHQ_					0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.7301263689001	2	461.730126	921.4457	1.303	0.00060163	-1.0068	-0.00046487	0.2962	0.00013677	461.7300254916058	15.676	0.21574	15.663	15.615	15.831	-0.012611	1488	40	0.7209441	0.024151623	0.71942466	293.08344	0	9.818298						172	10	3	NaN	NaN	NaN	0.76633	1	6310	6310		13.737	0	1	15586	+		1209	11783	728	739	912	912					-0.01816521730995646
AYHPLGHQ	8	Unmodified						0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	461.730126	921.4457	1.303	0.00060163	-1.0068	-0.00046487	0.2962	0.00013677	461.7300254916058	15.676	0.21574	15.663	15.615	15.831	-0.012611	1488	40	0.7209441	0.024151623	0.71942466	293.08344		9.818298	0.040636	0.00018932	-0.00075972	NaN	13.737	172	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15586	+		1210	11783	728	739							-0.01816521730995646
AYIDYLSHL	9	Unmodified	_AYIDYLSHL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7794818647001	2	547.779482	1093.54441	1.2465	0.00068282	-0.096561	-5.2894E-05	1.15	0.00062993	547.7799645429944	27.133	0.19303	27.133	27.084	27.277	0	1179	127	0.9112251	0.07727569	0.9112251	369.5802	0	31.34195						382	9	3	NaN	NaN	NaN	0.043119	1	12555	12555		49.833	18.272	1	56627			1211	5009	729	740	913	913					0.0013803672338781325
AYIDYLSHL	9	Unmodified	_AYIDYLSHL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7794818647001	2	547.779482	1093.54441	1.1487	0.00062924	1.0708	0.00058657	2.2195	0.0012158	547.7795337252504	27.156	0.1448	27.146	27.098	27.242	-0.010126	1179	124	0.9112251	0.075431764	0.90970564	369.58017	0	30.594086						377	7	3	NaN	NaN	NaN	0.062072	1	12234	12234		41.785	10.223	1	54541			1212	5009	729	740	914	914					0.0013803672338781325
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(84)NYI	0	0	1		ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	ENST00000471959.2_1_6:111995672-112015899:-|nuORF	ENST00000471959.2_1_6:111995672-112015899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.78952362225	2	594.789524	1187.56449	2.0116	0.0011964	-1.8939	-0.0011265	0.1176	6.9949E-05	594.7886260839539	18.796	0.19196	18.796	18.724	18.916	0	1179	67	0.9112251	0.04042524	0.9112251	369.21588	0	16.37976						443	9	5	NaN	NaN	NaN	0.012861	1	16079	16079		84.233	44.079	1	157380			1213	396	730	741	915	915		34			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(67)NYI	0	0	1		ENST00000471959.2_1_6:111995672-112015899:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	ENST00000471959.2_1_6:111995672-112015899:-|nuORF	ENST00000471959.2_1_6:111995672-112015899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.78952362225	2	594.789524	1187.56449	1.5554	0.00092514	-1.3208	-0.00078562	0.23456	0.00013952	594.7888012098841	18.842	0.26427	18.828	18.731	18.996	-0.014059	1176	70	0.9130621	0.042265058	0.91154265	369.9602	0	17.125244						447	12	4	NaN	NaN	NaN	0.024221	1	15466	15466		66.656	27.198	1	159120			1214	396	730	741	916	916		34			-0.02178535608322818
AYIEVVKR	8	Unmodified	_AYIEVVKR_					0	0	0		tr|U7STW7|U7STW7_FUSNUPhosphoribosylaminoimidazole-succinocarboxamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purCPE=3SV=1	tr|U7STW7|U7STW7_FUSNUPhosphoribosylaminoimidazole-succinocarboxamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purCPE=3SV=1	tr|U7STW7|U7STW7_FUSNUPhosphoribosylaminoimidazole-succinocarboxamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5778424338001	1	977.577842	976.570566	1.1154	0.0010904	-3.7577	-0.0036734	-2.6423	-0.002583	977.5741200218383	31.427	0.21716	31.423	31.302	31.519	-0.0044155	195	103	1.5033154	0.060352206	1.501796	305.32025	0	12.257416						190	10	2	NaN	NaN	NaN	0.69631	1	7645	7645		19.285	0	1	26019			1215	13868	731	742	917	917					0.0813435068552053
AYIFIHRKW	9	Unmodified	_AYIFIHRKW_					0	0	0		nc|ENSG00000172954|Q6UWP7-2|LCLAT1;ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.9012257169667	3	411.901226	1232.68185	2.0442	0.00084201	-2.5134	-0.0010353	-0.46924	-0.00019328	411.9001147298506	18.46	0.14396	18.46	18.364	18.508	0	1494	34	0.7172283	0.02044046	0.7172283	435.72934	0	12.417938						110	7	2	NaN	NaN	NaN	0.084037	1	17354	17354		38.131	25.824	1	15089			1216	4863	732	743	918	918					0.0748141011347343
AYIGVSLVL	9	Unmodified	_AYIGVSLVL_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;SLC39A9|p.L248Pfs*19|1|0.29|ENSG00000029364|chr14:69458409-69458418|TGCTTTTCTC/-|frameshift_variant;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5607953861	1	934.560795	933.553519	1.505	0.0014066	0.67536	0.00063117	2.1804	0.0020377	934.5604691105664	32.563	0.096508	32.563	32.514	32.611	0	222	157	1.4873441	0.09247041	1.4873441	302.27008	0	18.792572						282	5	3	NaN	NaN	NaN	0.034898	1	6702	6702		53.324	6.2836	1	53481			1217	487	733	744	919	919					0.08408430079703066
AYIGVSLVL	9	Unmodified	_AYIGVSLVL_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;SLC39A9|p.L248Pfs*19|1|0.29|ENSG00000029364|chr14:69458409-69458418|TGCTTTTCTC/-|frameshift_variant;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5607953861	1	934.560795	933.553519	1.1988	0.0011204	-0.91898	-0.00085884	0.27985	0.00026154	934.5602593246706	32.562	0.14483	32.558	32.51	32.655	-0.0031052	222	127	1.4873441	0.07463205	1.4858247	302.27008	0	15.167328						301	7	4	NaN	NaN	NaN	0.042649	1	6558	6558		50.033	8.5725	1	51872			1218	487	733	744	920	920					0.08408430079703066
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5819247587	1	1054.58192	1053.57465	1.8625	0.0019641	2.8395	0.0029945	4.702	0.0049587	1054.5834075348516	35.844	0.16874	35.844	35.771	35.94	0	60	154	1.582944	0.09017885	1.582944	321.16547	0	18.296509						328	8	2	NaN	NaN	NaN	0.029744	1	10811	10811		59.445	15.143	1	77583			1219	945	734	745	921	921					0.05000395388583456
AYILDTLVF	9	Unmodified						0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1054.58192	1053.57465	1.3601	0.0014343	5.8488	0.006168	7.2089	0.0076023	1054.5889186969407	35.818	0.24099	35.819	35.746	35.987	0.00052643	63	127	1.5811787	0.07422948	1.5796592	320.80728		15.060516	-0.01258	0.0015872	-0.0016424	NaN	59.445	444	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99411			1220	945	734	745							0.05000395388583456
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7925892399501	2	539.792589	1077.57063	1.4653	0.00079098	-0.99438	-0.00053676	0.47095	0.00025422	539.7920046536185	19.996	0.14448	19.982	19.934	20.078	-0.014141	1248	79	0.8689189	0.047909796	0.86739945	352.4864	0	19.43512						241	7	3	NaN	NaN	NaN	0.097143	1	11561	11561		36.235	2.8095	1	70739			1221	3875	735	746	922	922					0.03494305894855643
AYINKVEEL	9	Unmodified						0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.792589	1077.57063	1.9791	0.0010683	-2.0652	-0.0011148	-0.086145	-4.65E-05	539.7916275954354	19.972	0.19237	19.972	19.9	20.093	0	1248	64	0.8689189	0.038685918	0.8689189	352.4864		15.693329	-0.0046227	-0.00056157	0.00075972	NaN	36.235	304	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75358			1222	3875	735	746							0.03494305894855643
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.79546627990004	2	510.795466	1019.57638	1.7148	0.00087593	-3.2799	-0.0016753	-1.565	-0.00079942	510.79409029468536	20.862	0.16854	20.862	20.838	21.007	0	1263	82	0.85970795	0.049782038	0.85970795	349.00015	0	20.209137						246	8	4	NaN	NaN	NaN	0.01966	1	9356	9356		72.428	11.445	1	63031			1223	3176	736	747	923	923					0.06737449197191836
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.79546627990004	2	510.795466	1019.57638	0.8002	0.00040874	-0.57903	-0.00029577	0.22116	0.00011297	510.7951792961194	20.911	0.19264	20.897	20.849	21.041	-0.014086	1263	46	0.85970795	0.027638733	0.8581885	349.00015	0	11.220032						239	9	4	NaN	NaN	NaN	0.026469	1	9169	9169		63.731	21.413	1	64522			1224	3176	736	747	924	924					0.06737449197191836
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.78984958575	2	540.78985	1079.56515	1.5477	0.00083696	-2.1801	-0.001179	-0.63248	-0.00034204	540.7880615217865	29.546	0.19305	29.546	29.498	29.691	0	1227	121	0.88180584	0.073667586	0.88180584	357.70578	0	29.883331						285	9	3	NaN	NaN	NaN	0.062836	1	11964	11964		41.46	15.659	1	40386			1225	3491	737	748	925	925					0.028546271030108983
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5724227048997	1	1080.57242	1079.56515	1.2245	0.0013232	0.1819	0.00019656	1.4064	0.0015197	1080.5723726136337	29.546	0.16898	29.546	29.474	29.642	0	78	64	1.5723488	0.037097096	1.5723488	318.9165	0	7.5243225						206	8	3	NaN	NaN	NaN	0.020004	1	11965	11965		71.993	28.998	1	22964			1226	3491	737	748	926	926					0.028546271030108983
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.78984958575	2	540.78985	1079.56515	1.0628	0.00057474	-0.45689	-0.00024708	0.60589	0.00032766	540.7894386064298	29.545	0.16889	29.538	29.514	29.683	-0.0070648	1227	94	0.88180584	0.057064593	0.8802864	357.70578	0	23.148315						255	8	3	NaN	NaN	NaN	0.11467	1	11657	11657		33.698	0.56135	1	43790			1227	3491	737	748	927	927					0.028546271030108983
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5724227048997	1	1080.57242	1079.56515	1.4517	0.0015687	0.054986	5.9416E-05	1.5067	0.0016281	1080.5722072378164	29.545	0.0965	29.538	29.514	29.61	-0.0070648	72	79	1.5758814	0.045927167	1.5743619	319.633	0	9.315338						190	5	3	NaN	NaN	NaN	0.023074	1	11658	11658		68.108	31.522	1	23008			1228	3491	737	748	928	928					0.028546271030108983
AYIPLNNYLVF	11	Unmodified	_AYIPLNNYLVF_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.8582635019499	2	663.858264	1325.70197	1.0193	0.00067667	-2.9665	-0.0019693	-1.9472	-0.0012927	663.856272912366	35.337	0.21709	35.337	35.289	35.506	0	1071	97	0.977233	0.05857885	0.977233	395.48718	0	23.70694						565	10	5	NaN	NaN	NaN	0.00013397	1	19188	19188		85.344	50.048	1	142440			1229	3491	738	749	929	929					0.052151162627069425
AYIPLNNYLVF	11	Unmodified	_AYIPLNNYLVF_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.8582635019499	2	663.858264	1325.70197	1.3642	0.00090564	-2.9422	-0.0019532	-1.578	-0.0010476	663.8562699781821	36.085	0.14479	36.085	36.061	36.205	0	1071	43	0.977233	0.025619924	0.977233	395.48718	0	10.368408						88	7	2	NaN	NaN	NaN	0.63005	1	19189	19189		12.049	0.87837	1	6048.5			1230	3491	738	749	930	930					0.052151162627069425
AYIPLNNYLVF	11	Unmodified	_AYIPLNNYLVF_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.8582635019499	2	663.858264	1325.70197	1.448	0.00096127	-1.8482	-0.0012269	-0.40017	-0.00026565	664.3586050720822	36.012	0.072315	36.012	35.964	36.036	0	1071	40	0.977233	0.023791254	0.977233	395.48718	0	9.628326						56	4	2	NaN	NaN	NaN	0.63005	1	19192	19192		12.049	6.3545	1	3655			1231	3491	738	749	931	931					0.052151162627069425
AYIPLNNYLVF	11	Unmodified	_AYIPLNNYLVF_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.8582635019499	2	663.858264	1325.70197	1.5262	0.0010132	-3.6141	-0.0023992	-2.0879	-0.001386	663.8556369201132	35.336	0.24117	35.336	35.287	35.529	-4.5776E-05	1068	97	0.97906286	0.05857253	0.9775434	396.22775	0	23.704346						567	11	5	NaN	NaN	NaN	0.01271	1	18333	18333		66.656	28.526	1	150580			1232	3491	738	749	932	932					0.052151162627069425
AYIPLNNYLVF	11	Unmodified						0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	663.858264	1325.70197	3.6009	0.0023905	-2.5917	-0.0017205	1.0091	0.00066993	663.8591253032131	36.204	0.024101	36.205	36.205	36.229	0.0011024	1080	22	0.9717421	0.012813389	0.97022265	393.265		5.185608	0.06002	0.0002963	-0.0035052	NaN	12.049	28	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456.3			1233	3491	738	749							0.052151162627069425
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7743964868	2	587.774396	1173.53424	1.0067	0.00059173	3.8874	0.0022849	4.8941	0.0028766	587.7788941125349	27.663	0.12062	27.653	27.653	27.774	-0.009552	1194	82	0.902037	0.04959947	0.9005176	365.54315	0	20.099792						202	6	2	NaN	NaN	NaN	0.39244	1	15040	15040		14.042	3.6814	1	51358			1234	5328	739	750	933	933					-0.045585710018713144
AYIQESATF	9	Unmodified	_AYIQESATF_					0	0	0		ENST00000497302.1_1_1:12042112-12052340:+|nuORF;ENSG00000116688|ENST00000235329|MFN2	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.4887526549999	1	1029.48875	1028.48148	1.9078	0.001964	0.04987	5.1341E-05	1.9576	0.0020153	1029.4894327104228	22.597	0.072405	22.597	22.573	22.645	0	159	55	1.5245869	0.031890154	1.5245869	309.42285	0	6.47229						105	4	3	NaN	NaN	NaN	0.49672	1	9706	9706		9.746	0.62279	1	7913			1235	2097	740	751	934	934					-0.03162529064661612
AYISGLDVF	9	Unmodified	_AYISGLDVF_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5036744377	1	984.503674	983.496398	1.3979	0.0013763	0.50302	0.00049522	1.901	0.0018715	984.5041216338865	30.97	0.19308	30.97	30.922	31.115	0	165	70	1.5210435	0.040759444	1.5210435	308.8905	0	8.277344						286	9	4	NaN	NaN	NaN	0.020004	1	8006	8006		71.993	24.857	1	52364			1236	5519	741	752	935	935					0.0039896280333096
AYISGLDVF	9	Unmodified	_AYISGLDVF_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5036744377	1	984.503674	983.496398	1.5285	0.0015049	-0.64615	-0.00063613	0.8824	0.00086872	984.5025531365732	30.945	0.14481	30.94	30.915	31.06	-0.0050716	162	91	1.5228153	0.05317855	1.5212959	309.2503	0	10.799408						304	7	4	NaN	NaN	NaN	0.023074	1	7831	7831		68.108	26.324	1	54493			1237	5519	741	752	936	936					0.0039896280333096
AYITGLCFI	9	Unmodified	_AYITGLCFI_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000562715.1_1_16:14670117-14678644:-|nuORF;ENST00000563697.5_1_16:14649555-14678249:-|nuORF;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5172160119001	1	1000.51722	999.50994	1.4133	0.0014141	-0.89093	-0.00089139	0.5224	0.00052267	1000.5166276911842	34.901	0.2894	34.901	34.781	35.07	-4.5776E-05	108	67	1.5546752	0.03890264	1.5531558	315.65042	0	7.898529						348	13	3	NaN	NaN	NaN	0.011118	1	8390	8390		89.521	39.489	1	32636			1238	3286	742	753	937	937					0.010164973109226594
AYKSEVVYF	9	Unmodified	_AYKSEVVYF_					0	0	0		ENST00000377653.2_1_9:39174468-39266986:-|nuORF;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.28185737815	2	553.281857	1104.54916	1.4459	0.00079998	-2.7301	-0.0015105	-1.2842	-0.00071055	553.2804864148015	21.778	0.16862	21.778	21.754	21.922	0	1257	55	0.86339295	0.033161104	0.86339295	350.13672	0	13.447998						225	8	3	NaN	NaN	NaN	0.059222	1	13036	13036		42.995	16.88	1	31521			1239	1616	743	754	938	938					0.0010692086611925333
AYKSEVVYF	9	Unmodified	_AYKSEVVYF_					0	0	0		ENST00000377653.2_1_9:39174468-39266986:-|nuORF;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	ENST00000377653.2_1_9:39174468-39266986:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.28185737815	2	553.281857	1104.54916	1.3142	0.00072713	-1.9784	-0.0010946	-0.66421	-0.0003675	553.2807358417322	21.802	0.26485	21.788	21.74	22.004	-0.013895	1260	70	0.8615505	0.04237026	0.8600311	349.3896	0	17.182648						235	12	3	NaN	NaN	NaN	0.27507	1	12692	12692		20.513	2.733	1	32461			1240	1616	743	754	939	939					0.0010692086611925333
AYKVELER	8	Unmodified	_AYKVELER_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.5520216138001	1	1007.55202	1006.54475	2.1103	0.0021262	-4.9072	-0.0049442	-2.7969	-0.002818	1007.5469480375158	26.288	0.096571	26.288	26.263	26.36	0	243	58	1.4749115	0.03376031	1.4749115	299.42728	0	6.8537903						78	5	2	NaN	NaN	NaN	0.65542	1	8848	8848		21.835	0	1	9846	+		1241	9215	744	755	940	940					0.04173456443231771
AYKYIQELW	9	Unmodified	_AYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3162315117501	2	607.316232	1212.61791	1.9977	0.0012133	-2.0686	-0.0012563	-0.070888	-4.3051E-05	607.3149388775124	25.901	0.24134	25.901	25.877	26.119	0	1158	97	0.92408	0.058730662	0.92408	374.33566	0	23.79123						584	11	3	NaN	NaN	NaN	0.031551	1	16800	16800		72.076	35.49	1	179040			1242	4958	745	756	941	941					0.020105851658399843
AYKYIQELW	9	Unmodified	_AYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3162315117501	2	607.316232	1212.61791	1.9813	0.0012033	-1.2172	-0.00073924	0.76409	0.00046404	607.3153087939407	25.925	0.31377	25.914	25.865	26.179	-0.0116	1158	118	0.92408	0.071612775	0.9225606	374.33566	0	29.009644						622	14	3	NaN	NaN	NaN	0.06409	1	16127	16127		53.14	21.579	1	180820			1243	4958	745	756	942	942					0.020105851658399843
AYLALFLKL	9	Unmodified	_AYLALFLKL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.33115329445	2	526.331153	1050.64775	0.89781	0.00047254	-0.77611	-0.00040849	0.1217	6.4053E-05	526.331333595531	32.537	0.12067	32.534	32.486	32.607	-0.0031052	1218	52	0.8873258	0.031259656	0.8858064	360.06976	0	12.684906						116	6	2	NaN	NaN	NaN	0.62619	1	10447	10447		4.4131	0.44458	1	8238.9			1244	2911	746	757	943	943					0.12445568901830484
AYLALFLKL	9	Unmodified						0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.331153	1050.64775	1.1517	0.0006062	-2.1756	-0.0011451	-1.0238	-0.00053887	526.3303271286206	32.466	0.096508	32.466	32.442	32.539	0	1218	61	0.8873258	0.036782026	0.8873258	360.06976		14.925873	-0.034133	-0.00073632	0.00075972	NaN	4.4131	109	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7873.5			1245	2911	746	757							0.12445568901830484
AYLAQSPQL	9	Unmodified	_AYLAQSPQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5254725123001	1	990.525473	989.518196	1.6335	0.001618	-5.7047	-0.0056506	-4.0711	-0.0040326	990.5220814574161	22.597	0.048241	22.583	22.535	22.583	-0.01354	204	97	1.4979934	0.056826234	1.496474	304.18396	0	11.539185						111	3	2	NaN	NaN	NaN	0.35794	1	8028	8028		15.463	2.8748	1	11158			1246	2044	747	758	944	944					0.023017675519099612
AYLARFLI	8	Unmodified	_AYLARFLI_					0	0	0		nc|ENSG00000122970|Q8WYA0-3|IFT81;ENSG00000122970|ENST00000242591|IFT81	nc|ENSG00000122970|Q8WYA0-3|IFT81	nc|ENSG00000122970|Q8WYA0-3|IFT81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5771141523002	1	966.577114	965.569838	1.5286	0.0014775	-8.3879	-0.0081075	-6.8593	-0.00663	966.5688480198463	36.902	0.072033	36.904	36.88	36.952	0.0022469	159	34	1.5245869	0.019489527	1.5230675	309.68954	0	3.9589233						68	4	2	NaN	NaN	NaN	0.63975	1	7362	7362		22.812	1.8598	1	4597.9			1247	2352	748	759	945	945					0.08567556036473434
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7716568326	2	534.771657	1067.52876	2.1711	0.001161	-2.2911	-0.0012252	-0.11999	-6.4169E-05	534.7707177849051	19.54	0.264	19.54	19.444	19.708	0	1260	91	0.8615505	0.055298448	0.8615505	349.53885	0	22.43509						356	12	3	NaN	NaN	NaN	0.015447	1	11440	11440		77.761	46.085	1	71324			1248	715	749	760	946	946					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7716568326	2	534.771657	1067.52876	1.2182	0.00065144	-1.6883	-0.00090284	-0.47011	-0.0002514	534.7712168652647	19.539	0.26477	19.524	19.428	19.693	-0.014143	1260	70	0.8615505	0.042388618	0.8600311	349.53885	0	17.197449						447	12	4	NaN	NaN	NaN	0.022082	1	11172	11172		69.363	35.938	1	69894			1249	715	749	760	947	947					-0.0023024979368528875
AYLDNLQAF	9	Unmodified	_AYLDNLQAF_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7638318005	2	527.763832	1053.51311	1.6215	0.00085576	-3.9665	-0.0020934	-2.3451	-0.0012376	527.7634268278977	28.339	0.096512	28.339	28.339	28.436	0	1254	79	0.8652351	0.047925293	0.8652351	351.0932	0	19.447021						110	5	2	NaN	NaN	NaN	0.39244	1	10785	10785		14.042	5.0796	1	12569			1250	5293	750	761	948	948					-0.011505363107289668
AYLDYESTKE	10	Unmodified	_AYLDYESTKE_					0	0	0		PCDH11Y|p.S662Hfs*14|1|0.14|ENSG00000099715|chrY:5099560-5099560|T/-|frameshift_variant;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X	PCDH11Y|p.S662Hfs*14|1|0.14|ENSG00000099715|chrY:5099560-5099560|T/-|frameshift_variant	PCDH11Y|p.S662Hfs*14|1|0.14|ENSG00000099715|chrY:5099560-5099560|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.7798757951999	2	609.779876	1217.5452	1.097	0.00066891	-10.944	-0.0066736	-9.8472	-0.0060047	610.2732122278188	21.44	0.16865	21.44	21.368	21.537	0	1185	64	0.90755045	0.03857732	0.90755045	367.623	0	15.626587						227	8	3	NaN	NaN	NaN	0.62092	1	16922	16922		13.463	2.8581	1	24791			1251	1160	751	762	949	949					-0.054872134182460286
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7534640794499	2	540.753464	1079.49238	2.1751	0.0011762	-1.4225	-0.00076924	0.75258	0.00040696	540.7527451858169	19.492	0.31205	19.492	19.42	19.732	0	1239	100	0.87444305	0.060798764	0.87444305	354.71936	0	24.663116						697	14	4	NaN	NaN	NaN	0.01047	1	11944	11944		91.429	33.193	1	332800			1252	1813	752	763	950	950					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7534640794499	2	540.753464	1079.49238	1.9	0.0010274	-1.5278	-0.00082614	0.37223	0.00020129	540.7529409381655	19.515	0.26476	19.5	19.452	19.717	-0.014141	1242	103	0.87260187	0.06264448	0.8710824	353.97247	0	25.411865						679	12	4	NaN	NaN	NaN	0.0040938	1	11642	11642		104.71	40.161	1	313440			1253	1813	752	763	951	951					-0.0441912669039084
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2718240081	2	539.271824	1076.5291	2.5094	0.0013533	-1.7921	-0.00096645	0.71729	0.00038681	539.2715458587971	23.031	0.28911	23.031	23.007	23.296	0	1230	121	0.8799654	0.0736835	0.8799654	356.9719	0	29.89087						806	13	4	NaN	NaN	NaN	0.00015011	1	11823	11823		119.86	77.541	1	314080			1254	534	753	764	952	952					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2718240081	2	539.271824	1076.5291	1.9221	0.0010365	-1.2885	-0.00069488	0.63352	0.00034164	539.2713186914722	23.079	0.19285	23.065	23.041	23.234	-0.013294	1230	130	0.8799654	0.07920545	0.878446	356.9719	0	32.13095						627	9	4	NaN	NaN	NaN	0.0052656	1	11509	11509		102.05	46.553	1	295930			1255	534	753	764	953	953					-0.006108300738333128
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892	2	567.279315	1132.54408	2.0305	0.0011519	-1.1492	-0.00065189	0.88133	0.00049996	567.278397866013	22.284	0.072371	22.284	22.236	22.308	0	1221	79	0.885486	0.047837377	0.885486	358.98685	0	19.39386						178	4	3	NaN	NaN	NaN	0.006197	1	14176	14176		100.15	44.733	1	68916			1256	3201	754	765	954	954					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892	2	567.279315	1132.54408	1.1607	0.00065843	1.8328	0.0010397	2.9935	0.0016982	567.2809774058106	22.308	0.072344	22.294	22.246	22.318	-0.013731	1218	82	0.8873258	0.0496853	0.8858064	359.73273	0	20.143005						200	4	3	NaN	NaN	NaN	0.10945	1	13734	13734		34.454	7.1578	1	82391			1257	3201	754	765	955	955					-0.01689382996482891
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5462675339	1	1065.54627	1064.53899	1.9584	0.0020867	-0.6494	-0.00069196	1.309	0.0013948	1065.5460887257082	28.436	0.14481	28.436	28.388	28.532	0	90	121	1.5652816	0.07076216	1.5652816	317.53964	0	14.355103						271	7	3	NaN	NaN	NaN	0.019939	1	11331	11331		72.076	7.5261	1	33466			1258	7911	755	766	956	956					0.009303131409069465
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.27677200025	2	533.276772	1064.53899	0.67968	0.00036246	-0.77358	-0.00041253	-0.093898	-5.0074E-05	533.2765645147168	28.435	0.14481	28.426	28.354	28.499	-0.0089798	1239	43	0.87444305	0.025778055	0.8729236	354.78214	0	10.45874						177	7	3	NaN	NaN	NaN	0.12866	1	11071	11071		31.675	4.3792	1	21837			1259	7911	755	766	957	957					0.009303131409069465
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5462675339	1	1065.54627	1064.53899	1.0381	0.0011062	0.78339	0.00083473	1.8215	0.0019409	1065.5473151947072	28.435	0.14478	28.426	28.378	28.523	-0.0089798	90	124	1.5652816	0.07252741	1.5637622	317.53964	0	14.713196						222	7	2	NaN	NaN	NaN	0.013959	1	11072	11072		80.901	25.488	1	30303			1260	7911	755	766	958	958					0.009303131409069465
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2896824102501	2	584.289682	1166.56481	2.1025	0.0012285	-1.0182	-0.00059492	1.0843	0.00063356	584.7903895430686	27.615	0.24135	27.615	27.495	27.736	0	1203	91	0.8965218	0.05516112	0.8965218	363.3334	0	22.355164						635	11	4	NaN	NaN	NaN	0.084037	1	15359	15359		38.131	5.3528	1	184660			1261	4038	756	767	959	959					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2896824102501	2	584.289682	1166.56481	1.401	0.00081858	-0.76069	-0.00044446	0.6403	0.00037412	584.2886620356579	27.783	0.33788	27.774	27.75	28.088	-0.009552	1200	97	0.89836043	0.058813155	0.896841	364.07852	0	23.835205						653	15	6	NaN	NaN	NaN	0.097143	1	14827	14827		36.235	13.117	1	152130			1262	4038	756	767	960	960					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2896824102501	2	584.289682	1166.56481	1.5577	0.00091016	-0.8911	-0.00052066	0.66663	0.00038951	584.2891380155281	27.663	0.36198	27.653	27.364	27.726	-0.009552	1200	103	0.89836043	0.06250924	0.896841	364.07852	0	25.33313						785	16	5	NaN	NaN	NaN	0.054111	1	14828	14828		45.165	17.376	1	249440			1263	4038	756	767	961	961					-0.011807926168103222
AYLESFYKF	9	Unmodified						0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.289682	1166.56481	2.1622	0.0012634	-2.554	-0.0014923	-0.39173	-0.00022889	584.2880376887556	27.784	0.28958	27.784	27.712	28.001	0	1203	85	0.8965218	0.05146706	0.8965218	363.3334		20.858032	0.065501	-0.0011618	-0.00015958	NaN	45.165	454	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127270			1264	4038	756	767							-0.011807926168103222
AYLFDMNALEQ	11	Unmodified	_AYLFDMNALEQ_					0	0	0			REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.8726725899999	3	438.872673	1313.59619	0.90797	0.00039848	-3.817	-0.0016752	-2.909	-0.0012767	438.8709422587738	29.111	0.14482	29.103	29.079	29.224	-0.0077209	1398	31	0.77658504	0.018518806	0.7750656	471.46817	0	11.242859						118	7	3	NaN	NaN	NaN	0.64343	1	18161	18161		5.2847	0.38394	1	10696	+		1265	13494	757	768	962	962					-0.04806587645043692
AYLFDMNALEQ	11	Unmodified						0	0	0			REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	REV__tr|U7STH1|U7STH1_FUSNUNADHoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01482PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	438.872673	1313.59619	0.90797	0.00039848	-3.817	-0.0016752	-2.909	-0.0012767	438.8709422587738	29.111	0.14482	29.103	29.079	29.224	-0.0077209	1398	31	0.77658504	0.018518806	0.7750656	471.46817		11.242859	0.019874	0.00034138	0.00016617	NaN	5.2847	118	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10696	+		1266	13494	757	768							-0.04806587645043692
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2844000671	2	545.2844	1088.55425	1.154	0.00062928	-2.114	-0.0011527	-0.95995	-0.00052344	545.2830583883077	32.442	0.12064	32.442	32.394	32.514	0	1263	46	0.85970795	0.027641773	0.85970795	348.70547	0	11.211731						178	6	3	NaN	NaN	NaN	0.060816	1	12325	12325		42.318	12.719	1	27414			1267	2518	758	769	963	963					0.013512247287508217
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2844000671	2	545.2844	1088.55425	0.88741	0.00048389	-2.3988	-0.001308	-1.5114	-0.00082412	545.283388958785	32.417	0.19304	32.414	32.39	32.583	-0.0031052	1260	43	0.8615505	0.025794804	0.8600311	349.45282	0	10.462616						190	9	3	NaN	NaN	NaN	0.42773	1	12019	12019		12.588	3.4647	1	26723			1268	2518	758	769	964	964					0.013512247287508217
AYLFSAACR	9	Unmodified	_AYLFSAACR_					0	0	0			REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2472946668	2	501.247295	1000.48004	1.1525	0.00057767	5.9855	0.0030002	7.138	0.0035779	501.75085707822325	34.95	0.1206	34.95	34.901	35.022	-4.5776E-05	1302	37	0.8357362	0.022143304	0.8342168	339.35498	0	8.991425						133	6	4	NaN	NaN	NaN	0.45297	1	8434	8434		11.548	2.5865	1	9602.3	+		1269	11675	759	770	965	965					-0.020184416344250167
AYLFSAACR	9	Unmodified						0	0	0			REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.247295	1000.48004	1.0257	0.00051411	7.8596	0.0039396	8.8853	0.0044537	501.75180370066516	34.927	0.096378	34.927	34.903	34.999	0	1305	37	0.83389086	0.022145689	0.83389086	338.60565		8.992371	-0.011267	0.0010425	-0.00016297	NaN	11.548	124	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10914	+		1270	11675	759	770							-0.020184416344250167
AYLFSAACR	9	Unmodified						0	0	0			REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	REV__ENST00000305963.2_1_X:135053232-135055898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.247295	1000.48004	1.1525	0.00057767	5.9855	0.0030002	7.138	0.0035779	501.75085707822325	34.95	0.1206	34.95	34.901	35.022	-4.5776E-05	1302	37	0.8357362	0.022143304	0.8342168	339.35498		8.991425	0.011267	-0.00083626	0.00016297	NaN	11.548	133	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9602.3	+		1271	11675	759	770							-0.020184416344250167
AYLGILEGL	9	Unmodified	_AYLGILEGL_					0	0	0			REV__ENST00000541544.1_1_11:71936127-71939670:+|nuORF	REV__ENST00000541544.1_1_11:71936127-71939670:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5400599440001	1	948.54006	947.532783	1.937	0.0018374	-1.2394	-0.0011756	0.69765	0.00066175	948.5385437191087	30.173	0.16893	30.173	30.149	30.318	0	315	112	1.4322147	0.06584859	1.4322147	291.0038	0	13.379425						310	8	3	NaN	NaN	NaN	0.14945	1	7030	7030		28.667	1.935	1	49165	+		1272	10382	760	771	966	966					0.056918397000458754
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7638318004999	2	527.763832	1053.51311	1.74	0.00091828	-2.5904	-0.0013671	-0.85048	-0.00044885	527.7624266441892	19.084	0.14393	19.084	19.036	19.18	0	1224	43	0.883646	0.025764108	0.883646	358.5639	0	10.454498						189	7	4	NaN	NaN	NaN	0.056143	1	10786	10786		44.302	13.692	1	32039			1273	1701	761	772	967	967					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7638318004999	2	527.763832	1053.51311	1.2502	0.00065982	-1.3473	-0.00071106	-0.097077	-5.1234E-05	527.7633046086129	19.106	0.12025	19.092	19.068	19.188	-0.014141	1227	43	0.88180584	0.025764108	0.8802864	357.8172	0	10.454498						155	6	3	NaN	NaN	NaN	0.078597	1	10565	10565		38.918	15.8	1	28303			1274	1701	761	772	968	968					-0.011505363107289668
AYLIQVHKW	9	Unmodified	_AYLIQVHKW_					0	0	0		ENST00000534775.1_1_11:47587445-47593178:+|nuORF;ENSG00000110536|ENST00000326674|PTPMT1	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.55371454473334	3	386.553715	1156.63931	1.194	0.00046154	-1.5456	-0.00059748	-0.35167	-0.00013594	386.5531411283442	20.477	0.12023	20.477	20.453	20.573	0	1464	40	0.73579943	0.024130642	0.73579943	447.3364	0	14.670471						149	6	3	NaN	NaN	NaN	0.14301	1	15045	15045		25.801	2.7151	1	26500			1275	1767	762	773	969	969					0.06726014985224538
AYLIQVHKW	9	Unmodified	_AYLIQVHKW_					0	0	0		ENST00000534775.1_1_11:47587445-47593178:+|nuORF;ENSG00000110536|ENST00000326674|PTPMT1	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3269335838	2	579.326934	1156.63931	1.5044	0.00087153	-1.0994	-0.0006369	0.40499	0.00023462	579.3263092948226	20.477	0.096142	20.477	20.453	20.549	0	1164	43	0.9204082	0.025708497	0.9204082	373.05124	0	10.419922						140	5	3	NaN	NaN	NaN	0.04947	1	15046	15046		47.136	17.1	1	19469			1276	1767	762	773	970	970					0.06726014985224538
AYLIQVHKW	9	Unmodified	_AYLIQVHKW_					0	0	0		ENST00000534775.1_1_11:47587445-47593178:+|nuORF;ENSG00000110536|ENST00000326674|PTPMT1	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.55371454473334	3	386.553715	1156.63931	1.1796	0.00045597	-0.77019	-0.00029772	0.40939	0.00015825	386.5534840729315	20.598	0.16868	20.584	20.511	20.68	-0.014088	1464	37	0.73579943	0.022273242	0.73428	447.3364	0	13.54126						165	8	3	NaN	NaN	NaN	0.23112	1	14546	14546		20.513	3.8544	1	20859			1277	1767	762	773	971	971					0.06726014985224538
AYLIQVHKW	9	Unmodified	_AYLIQVHKW_					0	0	0		ENST00000534775.1_1_11:47587445-47593178:+|nuORF;ENSG00000110536|ENST00000326674|PTPMT1	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	ENST00000534775.1_1_11:47587445-47593178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3269335838	2	579.326934	1156.63931	1.1756	0.00068103	0.48873	0.00028313	1.6643	0.00096416	579.3277000213608	20.574	0.14463	20.559	20.535	20.68	-0.014086	1167	64	0.91857195	0.03857732	0.9170525	372.30698	0	15.635834						195	7	3	NaN	NaN	NaN	0.12328	1	14547	14547		32.453	17.599	1	21294			1278	1767	762	773	972	972					0.06726014985224538
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.32332826235	2	519.323328	1036.6321	2.0746	0.0010774	0.026843	1.394E-05	2.1014	0.0010913	519.3231223802826	29.256	0.26542	29.256	29.208	29.474	0	1212	103	0.8910048	0.062570035	0.8910048	361.6259	0	25.394867						726	12	6	NaN	NaN	NaN	0.10956	1	10077	10077		34.439	5.5432	1	892570			1279	2273	763	774	973	973					0.11525282384764068
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.32332826235	2	519.323328	1036.6321	1.0027	0.00052075	-0.8109	-0.00042112	0.19185	9.9632E-05	519.3230523023666	29.907	0.16888	29.9	29.803	29.972	-0.0070667	1212	43	0.8910048	0.02575022	0.88948536	361.6259	0	10.45108						162	8	3	NaN	NaN	NaN	0.39244	1	9871	9871		14.042	2.4931	1	25554			1280	2273	763	774	974	974					0.11525282384764068
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.32332826235	2	519.323328	1036.6321	1.8833	0.00097802	-0.47343	-0.00024586	1.4098	0.00073215	519.3229988645037	29.304	0.38605	29.296	29.224	29.61	-0.0077229	1209	106	0.892844	0.064413846	0.8913246	362.37234	0	26.143188						808	17	5	NaN	NaN	NaN	0.074859	1	9872	9872		39.459	8.8486	1	921760			1281	2273	763	774	975	975					0.11525282384764068
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.80549964995	2	572.8055	1143.59645	1.7785	0.0010187	-3.5757	-0.0020482	-1.7972	-0.0010294	572.8024519396065	28.677	0.21719	28.677	28.653	28.87	0	1158	109	0.92408	0.06614339	0.92408	374.5898	0	26.812225						532	10	4	NaN	NaN	NaN	0.00019594	1	14586	14586		117.07	53.108	1	103950			1282	6313	764	775	976	976					0.03039200137118314
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.80549964995	2	572.8055	1143.59645	0.97557	0.00055881	-0.49997	-0.00028639	0.4756	0.00027243	572.8050245024757	28.701	0.24133	28.692	28.668	28.909	-0.0083504	1158	100	0.92408	0.060615063	0.9225606	374.58978	0	24.571228						378	11	4	NaN	NaN	NaN	0.03618	1	14107	14107		52.78	10.462	1	83417			1283	6313	764	775	977	977					0.03039200137118314
AYLKLRNWQW	10	Unmodified	_AYLKLRNWQW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000473022.1_1_22:36698592-36700051:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.91905642813333	3	459.919056	1376.73534	1.2089	0.00055601	-2.0139	-0.00092621	-0.80493	-0.0003702	459.91795566922224	23.899	0.21699	23.899	23.827	24.044	0	1416	103	0.76547134	0.063011825	0.76547134	464.49942	0	38.23654						504	10	4	NaN	NaN	NaN	0.044307	1	19866	19866		53.652	41.502	1	97603			1284	1231	765	776	978	978					0.06204162825315507
AYLKLRNWQW	10	Unmodified	_AYLKLRNWQW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000473022.1_1_22:36698592-36700051:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3749464089001	2	689.374946	1376.73534	1.8537	0.0012779	-1.7136	-0.0011813	0.14015	9.6613E-05	689.3736425950704	23.899	0.24116	23.899	23.851	24.092	0	1032	43	1.0010062	0.025584042	1.0010062	404.9533	0	10.349945						313	11	4	NaN	NaN	NaN	0.0002888	1	19867	19867		97.85	78.513	1	46381			1285	1231	765	776	979	979					0.06204162825315507
AYLKLRNWQW	10	Unmodified	_AYLKLRNWQW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000473022.1_1_22:36698592-36700051:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.91905642813333	3	459.919056	1376.73534	1.0337	0.00047541	-2.1982	-0.001011	-1.1646	-0.0005356	459.91815346265594	24.164	0.33783	24.151	24.006	24.344	-0.012749	1413	100	0.7673241	0.06115526	0.76580465	465.62372	0	37.109924						444	15	3	NaN	NaN	NaN	0.66796	1	18931	18931		10.244	3.8874	1	64348			1286	1231	765	776	980	980					0.06204162825315507
AYLKLRNWQW	10	Unmodified	_AYLKLRNWQW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000473022.1_1_22:36698592-36700051:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3749464089001	2	689.374946	1376.73534	1.3724	0.00094609	-2.2768	-0.0015696	-0.90443	-0.00062349	689.8748678014836	24.14	0.28954	24.127	24.006	24.296	-0.012749	1029	43	1.0028336	0.02558142	1.0013142	405.69257	0	10.348846						247	13	3	NaN	NaN	NaN	0.044307	1	18932	18932		67.154	55.106	1	31594			1287	1231	765	776	981	981					0.06204162825315507
AYLKLRNWQW	10	Unmodified						0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000473022.1_1_22:36698592-36700051:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	459.919056	1376.73534	0.91392	0.00042033	-2.6808	-0.0012329	-1.7668	-0.0008126	459.9180837860126	24.236	0.072412	24.224	24.224	24.296	-0.012747	1416	82	0.76547134	0.05004692	0.7639519	464.49942		30.369232	0.16238	-0.00067424	-0.00075972	NaN	53.652	118	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22879			1288	1231	765	776							0.06204162825315507
AYLKWISQI	9	Unmodified	_AYLKWISQI_					0	0	0		ENSG00000135249|ENST00000257700|RINT1;RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3213168896501	2	561.321317	1120.62808	1.4727	0.00082665	-2.3397	-0.0013133	-0.86702	-0.00048668	561.3208642765617	27.109	0.14482	27.109	27.06	27.205	0	1170	79	0.91673553	0.04777533	0.91673553	371.70334	0	19.371185						200	7	3	NaN	NaN	NaN	0.011693	1	13718	13718		87.778	47.624	1	41711			1289	2924	766	777	982	982					0.07259192891092425
AYLLFYERI	9	Unmodified	_AYLLFYERI_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3265992328	2	594.326599	1186.63865	1.3814	0.00082103	-2.7282	-0.0016215	-1.3468	-0.00080043	594.324659116362	28.339	0.072357	28.339	28.315	28.388	0	1137	40	0.9369253	0.023847759	0.9369253	379.63266	0	9.662872						65	4	2	NaN	NaN	NaN	0.060816	1	16063	16063		42.318	10.642	1	10650			1290	3911	767	778	983	983					0.052791755455018574
AYLLFYERI	9	Unmodified	_AYLLFYERI_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.3265992328	2	594.326599	1186.63865	0.80846	0.00048049	-2.3657	-0.001406	-1.5572	-0.0009255	594.3257682183215	28.363	0.072384	28.354	28.305	28.378	-0.0089779	1137	46	0.9369253	0.027516663	0.93540585	379.63266	0	11.149475						83	4	2	NaN	NaN	NaN	0.27608	1	15450	15450		20.449	8.4	1	11129			1291	3911	767	778	984	984					0.052791755455018574
AYLLHKNART	10	Unmodified	_AYLLHKNART_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.83819676185	2	593.838197	1185.66184	0.80502	0.00047805	-2.8954	-0.0017194	-2.0904	-0.0012414	593.8383951032197	28.435	0.024166	28.426	28.402	28.426	-0.0089798	1155	49	0.92591566	0.029362142	0.9243962	375.1752	0	11.897369						84	2	3	NaN	NaN	NaN	0.75316	1	15426	15426		4.4131	0	1	11676	+		1292	9064	768	779	985	985					0.07643614382823216
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5993061574	1	1070.59931	1069.59203	2.2242	0.0023812	-1.3535	-0.0014491	0.87065	0.00093211	1070.5988147696403	26.288	0.048288	26.288	26.288	26.336	0	117	46	1.5493695	0.026531577	1.5493695	314.29263	0	5.3819885						72	3	2	NaN	NaN	NaN	0.01047	1	11562	11562		91.429	26.879	1	6918.6			1293	713	769	780	986	986					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.803291312	2	535.803291	1069.59203	2.5155	0.0013478	-0.52603	-0.00028185	1.9895	0.001066	535.8033001518136	26.288	0.19311	26.288	26.263	26.456	0	1194	85	0.902037	0.05150044	0.902037	365.95557	0	20.893677						422	9	5	NaN	NaN	NaN	0.014943	1	11563	11563		78.398	39.48	1	141010			1294	713	769	780	987	987					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5993061574	1	1070.59931	1069.59203	1.7943	0.001921	-1.5923	-0.0017047	0.20209	0.00021635	1070.596197935939	26.311	0.072378	26.3	26.3	26.373	-0.011135	111	49	1.5529068	0.028295875	1.5513873	315.0102	0	5.739868						80	4	3	NaN	NaN	NaN	0.032764	1	11270	11270		55.494	32.159	1	5850.6			1295	713	769	780	988	988					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.803291312	2	535.803291	1069.59203	1.5278	0.00081862	0.68561	0.00036735	2.2134	0.001186	535.8036314399677	26.311	0.19303	26.3	26.276	26.469	-0.011135	1191	70	0.90387505	0.042292476	0.9023556	366.70123	0	17.15802						386	9	4	NaN	NaN	NaN	0.020004	1	11271	11271		71.993	32.534	1	127630			1296	713	769	780	989	989					0.06001735714221468
AYLLRECAL	9	Unmodified	_AYLLRECAL_					0	0	0			REV__SLC30A8|p.P169A|1|0.43|ENSG00000164756|chr8:117157777-117157777|C/G|missense_variant	REV__SLC30A8|p.P169A|1|0.43|ENSG00000164756|chr8:117157777-117157777|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.28387713835	2	526.283877	1050.5532	1.5793	0.00083117	5.7716	0.0030375	7.3509	0.0038686	526.287234826488	23.585	0.096476	23.572	23.524	23.621	-0.013048	1263	46	0.85970795	0.027635753	0.8581885	348.86304	0	11.214386						120	5	3	NaN	NaN	NaN	0.40649	1	10438	10438		13.463	0.46021	1	21657	+		1297	13318	770	781	990	990					0.029946870881985888
AYLLTLGKF	9	Unmodified	_AYLLTLGKF_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.3051355092	2	513.305136	1024.59572	1.7283	0.00088715	-1.1746	-0.00060291	0.55375	0.00028424	513.302886613047	27.374	0.072433	27.374	27.374	27.446	0	1251	58	0.8670771	0.03500533	0.8670771	351.9687	0	14.209564						130	4	3	NaN	NaN	NaN	0.055351	1	9573	9573		44.638	0	1	27244			1298	601	771	782	991	991					0.08440405488067881
AYLLTLGKF	9	Unmodified						0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.305136	1024.59572	0.89256	0.00045816	-3.5577	-0.0018262	-2.6651	-0.001368	513.3030334510539	27.422	0.048239	27.411	27.411	27.46	-0.010126	1251	43	0.8670771	0.0257864	0.8655577	351.96872		10.467346	0.018717	-0.00095236	-0.00075972	NaN	44.638	100	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19031			1299	601	771	782							0.08440405488067881
AYLLVAYSL	9	Unmodified	_AYLLVAYSL_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5713600723999	1	1012.57136	1011.56408	1.594	0.0016141	-0.088469	-8.9581E-05	1.5056	0.0015245	1012.5712099200188	32.297	0.14481	32.297	32.249	32.394	0	90	91	1.5652816	0.05303788	1.5652816	317.75235	0	10.766693						304	7	4	NaN	NaN	NaN	0.032417	1	9059	9059		55.947	8.9072	1	43071			1300	1748	772	783	992	992					0.05876412734119185
AYLLVAYSL	9	Unmodified	_AYLLVAYSL_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5713600723999	1	1012.57136	1011.56408	1.1635	0.0011782	0.57512	0.00058235	1.7387	0.0017605	1012.5719449060463	32.296	0.19308	32.292	32.22	32.413	-0.0037613	87	94	1.5670487	0.054802895	1.5655292	318.11105	0	11.125						338	9	4	NaN	NaN	NaN	0.021781	1	8886	8886		69.745	30.827	1	45414			1301	1748	772	783	993	993					0.05876412734119185
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8080423389001	2	546.808042	1091.60153	1.7009	0.00093009	-0.92374	-0.00050511	0.7772	0.00042498	546.8075258921743	29.449	0.2655	29.449	29.401	29.667	0	1149	139	0.92958635	0.084534824	0.92958635	377.0356	0	34.286926						669	12	5	NaN	NaN	NaN	0.032417	1	12477	12477		55.947	17.029	1	521330			1302	766	773	784	994	994					0.059395039997752974
AYLLYSLHL	9	Unmodified	_AYLLYSLHL_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.8080423389001	2	546.808042	1091.60153	1.7231	0.0009422	-0.87739	-0.00047976	0.8457	0.00046244	546.8076043394606	29.449	0.41017	29.442	29.393	29.803	-0.0070667	1146	121	0.93142134	0.07347685	0.9299019	377.77988	0	29.801819						860	18	5	NaN	NaN	NaN	0.029744	1	12161	12161		59.445	6.6869	1	523090			1303	766	773	784	995	995					0.059395039997752974
AYLNGHAE	8	Unmodified	_AYLNGHAE_					0	0	0		nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4053573766	1	874.405357	873.398081	1.682	0.0014708	-8.0004	-0.0069956	-6.3183	-0.0055248	874.3992319641538	26.505	0.048262	26.505	26.481	26.529	0	420	79	1.3697531	0.046456933	1.3697531	278.65085	0	9.450806						115	3	2	NaN	NaN	NaN	0.80071	1	5709	5709		9.1232	0.83292	1	9072.9			1304	2396	774	785	996	996					-0.043682207218580515
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.8340601241501	2	529.83406	1057.65357	2.0551	0.0010889	-1.4797	-0.00078398	0.57544	0.00030489	529.833490748923	28.17	0.24128	28.17	28.122	28.363	0	1233	82	0.87812483	0.0496853	0.87812483	356.30554	0	20.160156						426	11	4	NaN	NaN	NaN	0.12328	1	11003	11003		32.453	0	1	97881			1305	2274	775	786	997	997					0.12704667413527204
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.8340601241501	2	529.83406	1057.65357	0.90933	0.00048179	-0.92345	-0.00048927	-0.014114	-7.4782E-06	529.8338433947496	28.194	0.24134	28.185	28.088	28.33	-0.0089779	1236	85	0.876284	0.051528275	0.8747646	355.55862	0	20.907959						506	11	4	NaN	NaN	NaN	0.021105	1	10770	10770		70.6	0	1	114300			1306	2274	775	786	998	998					0.12704667413527204
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5094880970998	1	1039.50949	1038.50221	2.1264	0.0022104	0.46871	0.00048722	2.5951	0.0026976	1039.5100507860957	26.384	0.21716	26.373	26.3	26.517	-0.011137	156	172	1.5263584	0.10109854	1.5248389	309.74283	0	20.515839						698	10	3	NaN	NaN	NaN	0.00065562	1	9926	9926		115.07	56.834	1	523400			1307	4557	776	787	999	999					-0.015499386850024166
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.3033211017499	2	622.303321	1242.59209	1.0054	0.00062566	1.9159	0.0011923	2.9213	0.0018179	622.3038414190062	31.115	0.14478	31.115	31.091	31.235	0	1149	94	0.92958635	0.056910694	0.92958635	376.46396	0	23.047699						443	7	5	NaN	NaN	NaN	0.0039884	1	17595	17595		96.341	70.226	1	189400			1308	4557	777	788	1000	1000					-0.01950309076460144
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.3033211017499	2	622.303321	1242.59209	1.0428	0.00064895	6.1315	0.0038156	7.1743	0.0044646	622.3071521457772	31.114	0.2655	31.109	31.06	31.326	-0.0050716	1146	97	0.93142134	0.05873698	0.9299019	377.2071	0	23.787323						816	12	5	NaN	NaN	NaN	0.00018674	1	16851	16851		106.42	72.999	1	286790			1309	4557	777	788	1001	1001					-0.01950309076460144
AYLQLLNLF	9	Unmodified	_AYLQLLNLF_					0	0	0		ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	ENST00000466901.5_1_2:232653280-232656595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.815867371	2	547.815867	1093.61718	0.46336	0.00025384	-1.5871	-0.00086944	-1.1237	-0.0006156	547.814854233043	38.972	0.14417	38.972	38.876	39.02	0	1215	40	0.8891654	0.023914814	0.8891654	360.63278	0	9.699493						157	7	3	NaN	NaN	NaN	0.02781	1	12576	12576		61.977	26.68	1	16345			1310	3478	778	789	1002	1002					0.07411790516789551
AYLSEAMKL	9	Unmodified	_AYLSEAMKL_					0	0	0		nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2704354121	2	513.270435	1024.52632	2.2247	0.0011419	-0.12714	-6.5255E-05	2.0976	0.0010766	513.2700677279046	22.935	0.048185	22.935	22.911	22.959	0	1269	34	0.8560222	0.020270646	0.8560222	347.48154	0	8.228363						58	3	2	NaN	NaN	NaN	0.53317	1	9560	9560		8.2448	0.70444	1	7934.9			1311	3642	779	790	1003	1003					0.015035784770134342
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2785947952001	2	529.278595	1056.54264	1.633	0.00086429	-2.2264	-0.0011784	-0.59348	-0.00031412	529.2778947329755	27.109	0.21717	27.109	27.06	27.277	0	1236	88	0.876284	0.053417623	0.876284	355.56345	0	21.674866						506	10	5	NaN	NaN	NaN	0.026295	1	10943	10943		63.958	31.505	1	130210			1312	4574	780	791	1004	1004					0.016627044337838015
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2785947952001	2	529.278595	1056.54264	0.96175	0.00050903	-1.1354	-0.00060094	-0.17365	-9.1911E-05	529.2785009874251	27.156	0.21717	27.146	27.098	27.315	-0.010126	1236	94	0.876284	0.057101607	0.8747646	355.56342	0	23.169708						600	10	5	NaN	NaN	NaN	0.024221	1	10717	10717		66.656	31.36	1	126640			1313	4574	780	791	1005	1005					0.016627044337838015
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(58)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2760521062501	2	537.276052	1072.53755	2.2578	0.0012131	-2.1392	-0.0011493	0.11864	6.3742E-05	537.2751970034373	23.538	0.16866	23.538	23.513	23.682	0	1239	85	0.87444305	0.051578403	0.87444305	354.74835	0	20.924591						369	8	4	NaN	NaN	NaN	0.030669	1	11663	11663		58.235	19.318	1	143770			1314	4574	780	792	1006	1006		488			0.004184005711522332
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(61)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2760521062501	2	537.276052	1072.53755	1.8245	0.00098026	-1.4941	-0.00080275	0.33039	0.00017751	537.2751576917796	23.561	0.19291	23.548	23.476	23.669	-0.013048	1239	70	0.87444305	0.04235655	0.8729236	354.74835	0	17.18341						403	9	6	NaN	NaN	NaN	0.02857	1	11362	11362		60.982	24.395	1	146200			1315	4574	780	792	1007	1007		488			0.004184005711522332
AYLSGSAS	8	Unmodified	_AYLSGSAS_					0	0	0			REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3570102005	1	755.35701	754.349734	1.7128	0.0012937	5.1317	0.0038763	6.8444	0.00517	755.3604524391451	22.934	0.16874	22.921	22.896	23.065	-0.01354	564	49	1.2837118	0.028753877	1.2821923	261.78534	0	5.8637695						139	8	2	NaN	NaN	NaN	0.76633	1	4060	4060		13.737	4.6139	1	15366	+		1316	11348	781	793	1008	1008					-0.03726714361766881
AYLSIWTEL	9	Unmodified	_AYLSIWTEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5720883538997	1	1095.57209	1094.56481	1.8108	0.0019839	-0.090977	-9.9672E-05	1.7198	0.0018842	1095.572626232744	34.348	0.1929	34.348	34.3	34.493	0	60	79	1.582944	0.04591751	1.582944	321.00998	0	9.311768						346	9	4	NaN	NaN	NaN	0.00050979	1	12613	12613		115.51	48.355	1	32562			1317	2699	782	794	1009	1009					0.021312073831722955
AYLSIWTEL	9	Unmodified	_AYLSIWTEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5720883538997	1	1095.57209	1094.56481	1.3593	0.0014893	-0.78472	-0.00085972	0.57462	0.00062953	1095.5712472225237	34.347	0.16862	34.346	34.298	34.466	-0.0012474	60	64	1.582944	0.03708136	1.5814246	321.00998	0	7.5198364						176	8	2	NaN	NaN	NaN	0.0047854	1	12284	12284		103.03	50.402	1	22983			1318	2699	782	794	1010	1010					0.021312073831722955
AYLSKAMEI	9	Unmodified	_AYLSKAMEI_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2704354121	2	513.270435	1024.52632	1.9895	0.0010212	-2.5834	-0.001326	-0.5939	-0.00030483	513.2693321199968	21.392	0.21678	21.392	21.32	21.537	0	1278	127	0.85049206	0.07753521	0.85049206	345.23672	0	31.473541						385	10	4	NaN	NaN	NaN	0.028404	1	9558	9558		61.199	23.068	1	80080			1319	2438	783	795	1011	1011					0.015035784770134342
AYLSKAMEI	9	Unmodified	_AYLSKAMEI_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2704354121	2	513.270435	1024.52632	1.3517	0.00069381	-3.1365	-0.0016099	-1.7847	-0.00091605	513.26876154104	21.416	0.31298	21.402	21.33	21.643	-0.014004	1278	118	0.85049206	0.071985304	0.8489726	345.23672	0	29.220673						331	14	2	NaN	NaN	NaN	0.032409	1	9375	9375		55.958	17.827	1	77850			1320	2438	783	795	1012	1012					0.015035784770134342
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(49)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.26789272315	2	521.267893	1040.52123	1.7246	0.00089895	-1.7266	-0.0009	-0.0020158	-1.0508E-06	521.2675723508069	17.522	0.072023	17.508	17.46	17.532	-0.013567	1287	49	0.8449601	0.02951479	0.84344065	342.92126	0	11.978394						135	4	3	NaN	NaN	NaN	0.045904	1	10012	10012		48.65	14.211	1	30980			1321	2438	783	796	1013	1013		274			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(40)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.26789272315	2	521.267893	1040.52123	1.7778	0.00092673	-1.2526	-0.00065296	0.52521	0.00027377	521.2674987672057	17.594	0.16779	17.58	17.556	17.724	-0.013567	1287	64	0.8449601	0.038736105	0.84344065	342.92126	0	15.720795						254	8	4	NaN	NaN	NaN	0.070055	1	10013	10013		40.154	11.258	1	46731			1322	2438	783	796	1014	1014		274			0.0025927461438186583
AYLSRRLAYF	10	Unmodified	_AYLSRRLAYF_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.56802369379994	3	420.568024	1258.68224	1.3343	0.00056115	-1.5773	-0.00066337	-0.24307	-0.00010223	420.5678925151232	21.103	0.072266	21.103	21.079	21.151	0	1476	37	0.72837335	0.022287786	0.72837335	442.3991	0	13.53714						56	4	2	NaN	NaN	NaN	0.65893	1	17975	17975		10.861	5.9607	1	5021.2			1323	5362	784	797	1015	1015					0.0632478504262508
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.5379530302	3	365.537953	1093.59203	1.5389	0.00056251	-2.7899	-0.0010198	-1.2511	-0.00045732	365.53701436789777	20.814	0.26485	20.814	20.766	21.031	0	1413	52	0.7673241	0.03149396	0.7673241	466.81836	0	19.160034						282	12	4	NaN	NaN	NaN	0.29681	1	12568	12568		16.858	5.688	1	94768			1324	4780	785	798	1016	1016					0.04897735714234841
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.803291312	2	547.803291	1093.59203	1.3194	0.0007228	-1.605	-0.00087921	-0.28553	-0.00015641	547.8025222317742	20.814	0.21679	20.814	20.766	20.983	0	1191	73	0.90387505	0.044133663	0.90387505	366.5989	0	17.899994						287	10	4	NaN	NaN	NaN	0.0081087	1	12570	12570		96.245	54.461	1	87763			1325	4780	785	798	1017	1017					0.04897735714234841
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.803291312	2	547.803291	1093.59203	1.1138	0.00061013	-3.7483	-0.0020534	-2.6346	-0.0014432	547.8024766007052	20.911	0.19264	20.897	20.849	21.041	-0.014086	1194	94	0.902037	0.05702758	0.9005176	365.85345	0	23.129578						450	9	5	NaN	NaN	NaN	1.433E-07	1	12243	12243		136.23	86.398	1	104090			1326	4780	785	798	1018	1018					0.04897735714234841
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.5379530302	3	365.537953	1093.59203	1.3401	0.00048985	-1.4357	-0.0005248	-0.095594	-3.4943E-05	365.53730303375426	20.911	0.21674	20.897	20.849	21.065	-0.014086	1410	52	0.76917666	0.03149396	0.7676573	467.9454	0	19.160034						336	10	5	NaN	NaN	NaN	0.049695	1	12245	12245		33.425	17.603	1	94833			1327	4780	785	798	1019	1019					0.04897735714234841
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.5458736034	1	1027.54587	1026.5386	1.3529	0.0013901	1.9677	0.0020219	3.3206	0.0034121	1027.5485270319557	27.397	0.24131	27.387	27.267	27.508	-0.010126	93	184	1.5635144	0.108009696	1.5619949	317.33133	0	21.921661						570	11	4	NaN	NaN	NaN	0.021105	1	9441	9441		70.6	3.9433	1	116830			1328	1741	786	799	1020	1020					0.026389382117031346
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.30058144755	2	557.300581	1112.58661	1.6674	0.00092925	0.24987	0.00013926	1.9173	0.0010685	557.3009448174558	22.814	0.072338	22.814	22.79	22.863	0	1164	46	0.9204082	0.027543366	0.9204082	373.22522	0	11.168823						69	4	2	NaN	NaN	NaN	0.16939	1	13387	13387		27.296	3.9618	1	7699.1			1329	3347	787	800	1021	1021					0.03482012131757983
AYLVYTDRL	9	Unmodified						0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.300581	1112.58661	1.5966	0.00088981	-2.0959	-0.0011681	-0.49929	-0.00027826	557.2995686070652	22.838	0.072309	22.824	22.824	22.896	-0.01354	1164	40	0.9204082	0.02386576	0.91888875	373.22522		9.677582	0.0049394	-0.0005383	-0.00075972	NaN	27.296	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7499.8			1330	3347	787	800							0.03482012131757983
AYLYKYFAL	9	Unmodified	_AYLYKYFAL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.31041785235	2	576.310418	1150.60628	1.836	0.0010581	-3.176	-0.0018304	-1.34	-0.00077225	576.3090925684351	27.833	0.21715	27.833	27.808	28.026	0	1164	85	0.9204082	0.051439285	0.9204082	373.07428	0	20.85019						364	10	5	NaN	NaN	NaN	0.043119	1	14840	14840		49.833	34.011	1	71587			1331	7828;7829;2996	788	801	1022	1022					0.037003881425107465
AYMAAFNSI	9	Unmodified	_AYMAAFNSI_					0	0	0		nc|ENSG00000183605|Q6P4A7-3|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.4604294145	1	987.460429	986.453153	1.9282	0.001904	-0.19904	-0.00019655	1.7292	0.0017075	987.4604723178803	26.795	0.048252	26.795	26.795	26.843	0	195	40	1.5033154	0.023062348	1.5033154	305.27768	0	4.683258						50	3	2	NaN	NaN	NaN	0.56671	1	8093	8093		6.8632	0.613	1	3547.3			1332	5314	789	802	1023	1023					-0.04061550245603485
AYMAAFNSI	9	Unmodified						0	0	0		nc|ENSG00000183605|Q6P4A7-3|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	nc|ENSG00000183605|Q6P4A7-3|SFXN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	987.460429	986.453153	1.8104	0.0017877	-1.5923	-0.0015723	0.21812	0.00021539	987.4589037019438	26.818	0.072412	26.808	26.783	26.856	-0.010645	198	43	1.5015416	0.02483511	1.5000222	304.91745		5.0432434	0.0063293	-0.00071489	-0.0016466	NaN	6.8632	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5058.9			1333	5314	789	802							-0.04061550245603485
AYMGFINSF	9	Unmodified	_AYMGFINSF_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.4760794787	1	1049.47608	1048.4688	1.413	0.0014829	1.6104	0.0016901	3.0234	0.0031729	1049.478473288774	30.994	0.072411	30.994	30.97	31.042	0	111	64	1.5529068	0.037148118	1.5529068	315.091	0	7.537506						106	4	2	NaN	NaN	NaN	0.11467	1	10557	10557		33.698	17.114	1	10247			1334	1602	790	803	1024	1024					-0.05349263728544429
AYMGFINSF	9	Unmodified						0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1049.47608	1048.4688	1.4639	0.0015363	0.31636	0.00033202	1.7803	0.0018683	1049.4769861703887	30.993	0.096537	30.988	30.964	31.06	-0.0050716	108	61	1.5546752	0.03537357	1.5531558	315.44983		7.177429	-0.0030628	-0.00067589	0.00012448	NaN	33.698	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10859			1335	1602	790	803							-0.05349263728544429
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.77314527655	2	563.773145	1125.53174	2.2445	0.0012654	-0.93522	-0.00052725	1.3093	0.00073813	563.7728090231886	27.712	0.2654	27.712	27.591	27.857	0	1188	121	0.90571284	0.07357204	0.90571284	367.21457	0	29.829254						597	12	4	NaN	NaN	NaN	0.002833	1	13895	13895		108.51	55.751	1	396200			1336	3588	791	804	1025	1025					-0.026006979405110542
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.77314527655	2	563.773145	1125.53174	1.8043	0.0010172	-0.40253	-0.00022694	1.4017	0.00079026	564.274504865446	28.556	0.14482	28.556	28.508	28.653	0	1191	40	0.90387505	0.023891509	0.90387505	366.46945	0	9.6866455						117	7	3	NaN	NaN	NaN	0.63698	1	13896	13896		3.9685	0.81517	1	9100.4			1337	3588	791	804	1026	1026					-0.026006979405110542
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.77314527655	2	563.773145	1125.53174	1.5929	0.00089803	-1.6876	-0.00095145	-0.094748	-5.3416E-05	563.7721366807756	27.735	0.2896	27.726	27.653	27.943	-0.009552	1188	133	0.90571284	0.08094674	0.9041934	367.21457	0	32.819275						764	13	4	NaN	NaN	NaN	0.011118	1	13469	13469		89.521	50.603	1	423170			1338	3588	791	804	1027	1027					-0.026006979405110542
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(90)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7706025876	2	571.770603	1141.52665	2.3731	0.0013569	-2.6911	-0.0015387	-0.31795	-0.00018179	571.7709603556809	25.346	0.28955	25.346	25.25	25.539	0	1191	130	0.90387505	0.07909429	0.90387505	366.40732	0	32.062775						976	13	5	NaN	NaN	NaN	0.011118	1	14509	14509		89.521	52.935	1	416720			1339	3588	791	805	1028	1028		403			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(100)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7706025876	2	571.770603	1141.52665	2.0955	0.0011981	-3.2198	-0.001841	-1.1243	-0.00064285	571.7711406282773	25.346	0.33773	25.334	25.214	25.551	-0.012011	1194	133	0.902037	0.08092928	0.9005176	365.66223	0	32.80664						1141	15	5	NaN	NaN	NaN	0.0055068	1	14031	14031		101.55	64.968	1	457720			1340	3588	791	805	1029	1029		403			-0.038450018031426225
AYMQEPLFVEF	11	Unmodified	_AYMQEPLFVEF_					0	0	0		ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3259389183	2	687.325939	1372.63732	1.8479	0.0012701	-2.1544	-0.0014807	-0.30646	-0.00021064	687.3246137405182	34.228	0.2411	34.228	34.155	34.396	0	1056	103	0.9863805	0.062240064	0.9863805	399.04834	0	25.179718						704	11	5	NaN	NaN	NaN	0.0071196	1	19820	19820		72.093	46.412	1	142610			1341	6179	792	806	1030	1030					-0.0340882660555053
AYMQEPLFVEF	11	Unmodified	_AYMQEPLFVEF_					0	0	0		ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3259389183	2	687.325939	1372.63732	1.4266	0.00098055	-2.7419	-0.0018846	-1.3153	-0.00090405	687.3238910648337	34.227	0.21703	34.225	34.153	34.37	-0.0012474	1053	109	0.9882094	0.06589419	0.98669	399.78824	0	26.65802						781	10	5	NaN	NaN	NaN	2.9749E-11	1	18885	18885		107.32	68.282	1	147370			1342	6179	792	806	1031	1031					-0.0340882660555053
AYMQEPLFVEF	11	Oxidation (M)	_AYM(Oxidation (M))QEPLFVEF_		AYM(1)QEPLFVEF		AYM(92)QEPLFVEF	0	0	1		ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.32339622935	2	695.323396	1388.63224	1.3862	0.00096389	-2.9364	-0.0020417	-1.5501	-0.0010778	695.3212797473084	32.273	0.28956	32.273	32.201	32.49	0	1059	103	0.98455137	0.062226653	0.98455137	398.26263	0	25.171387						862	13	6	NaN	NaN	NaN	3.5092E-07	1	19970	19970		91.973	60.297	1	228690			1343	6179	792	807	1032	1032		626			-0.046531304681820984
AYMQEPLFVEF	11	Oxidation (M)	_AYM(Oxidation (M))QEPLFVEF_		AYM(1)QEPLFVEF		AYM(75)QEPLFVEF	0	0	1		ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.32339622935	2	695.323396	1388.63224	0.89726	0.00062388	-2.5603	-0.0017802	-1.663	-0.0011563	695.3218985457335	32.272	0.41024	32.268	32.148	32.558	-0.0037613	1059	97	0.98455137	0.058559954	0.9830319	398.26263	0	23.688171						924	18	5	NaN	NaN	NaN	0.0044011	1	19037	19037		74.737	52.887	1	229240			1344	6179	792	807	1033	1033		626			-0.046531304681820984
AYMREHNQL	9	Unmodified	_AYMREHNQL_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.27711473875	2	581.277115	1160.53968	1.2115	0.00070421	-0.45507	-0.00026452	0.75642	0.00043969	581.7774492377793	12.772	0.12007	12.772	12.772	12.892	0	1227	37	0.88180584	0.022081137	0.88180584	357.3911	0	8.949371						83	6	3	NaN	NaN	NaN	0.27507	1	15159	15159		20.513	12.269	1	4714.5			1345	14025	793	808	1034	1034					-0.03417170691045612
AYMRSLFDYF	10	Unmodified	_AYMRSLFDYF_					0	0	0		ENSG00000078237|ENST00000179259|TIGAR	ENSG00000078237|ENST00000179259|TIGAR	ENSG00000078237|ENST00000179259|TIGAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.80517368645	2	656.805174	1311.59579	1.0381	0.00068181	-1.0781	-0.00070811	-0.040047	-2.6303E-05	656.8038203669441	31.065	0.072418	31.06	31.012	31.084	-0.0050716	1104	49	0.9570911	0.029314697	0.95557165	387.3787	0	11.865021						91	4	2	NaN	NaN	NaN	0.68732	1	18139	18139		8.9191	2.6689	1	9964.9			1346	880	794	809	1035	1035					-0.04753962574250181
AYMYYLKHF	9	Unmodified	_AYMYYLKHF_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.2995272025499	2	618.299527	1234.5845	1.1316	0.00069968	-3.5971	-0.0022241	-2.4655	-0.0015244	618.2982716039052	21.464	0.096478	21.464	21.44	21.537	0	1128	31	0.9424274	0.018333495	0.9424274	381.6916	0	7.425232						90	5	3	NaN	NaN	NaN	0.66196	1	17384	17384		2.4615	0.28518	1	8468.3			1347	2274	795	810	1036	1036					-0.023407398777180788
AYNAISFTW	9	Unmodified	_AYNAISFTW_					0	0	0		nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5098224481	1	1072.50982	1071.50255	1.153	0.0012366	-0.012698	-1.3618E-05	1.1403	0.001223	1072.5096438319576	30.703	0.16887	30.698	30.649	30.818	-0.0057564	150	91	1.5299006	0.053105354	1.5283811	310.33627	0	10.772278						280	8	2	NaN	NaN	NaN	0.01452	1	11321	11321		79.199	20.963	1	61588			1348	2864	796	811	1037	1037					-0.030345189651370674
AYNAISFTW	9	Unmodified						0	0	0		nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1072.50982	1071.50255	1.3978	0.0014992	-0.72732	-0.00078006	0.6705	0.00071912	1072.5096883039632	30.704	0.19306	30.704	30.656	30.849	0	153	121	1.5281296	0.07078469	1.5281296	309.97702		14.35849	0.0033982	-0.00034089	-0.00012579	NaN	79.199	673	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88781			1349	2864	796	811							-0.030345189651370674
AYNAMNKAYF	10	Unmodified	_AYNAMNKAYF_					0	0	0		tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	tr|U7SRG5|U7SRG5_FUSNUHigh-affinityirontransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01654PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.776416247	2	596.776416	1191.53828	0.87794	0.00052393	-3.8015	-0.0022686	-2.9235	-0.0017447	596.7760001384361	32.658	0.072395	32.655	32.631	32.703	-0.0031052	1191	55	0.90387505	0.033075213	0.9023556	366.22372	0	13.401123						86	4	3	NaN	NaN	NaN	0.67523	1	15576	15576		9.746	1.5012	1	6190.3			1350	13816	797	812	1038	1038					-0.04982804779797334
AYNAVSFTW	9	Unmodified	_AYNAVSFTW_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.75072442525	2	529.750724	1057.4869	1.4548	0.00077068	-3.0551	-0.0016185	-1.6003	-0.00084778	529.7482949127635	29.039	0.072378	29.039	29.039	29.112	0	1311	61	0.83019954	0.036905527	0.83019954	336.8602	0	14.974701						86	4	2	NaN	NaN	NaN	0.10956	1	10970	10970		34.439	17.855	1	12888			1351	71	798	813	1039	1039					-0.03954805482203483
AYNAVSFTW	9	Unmodified	_AYNAVSFTW_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.4941723839	1	1058.49417	1057.4869	1.9949	0.0021116	-0.81544	-0.00086314	1.1794	0.0012484	1058.4934000103458	29.039	0.24138	29.039	28.991	29.232	0	180	73	1.5121819	0.042547345	1.5121819	306.7938	0	8.63208						462	11	4	NaN	NaN	NaN	0.0012818	1	10972	10972		113.18	60.559	1	101070			1352	71	798	813	1040	1040					-0.03954805482203483
AYNAVSFTW	9	Unmodified	_AYNAVSFTW_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.4941723839	1	1058.49417	1057.4869	1.5115	0.0015999	-0.7675	-0.0008124	0.74402	0.00078754	1058.4930794880206	29.038	0.28959	29.031	28.982	29.272	-0.0077229	180	88	1.5121819	0.0513978	1.5106624	306.7938	0	10.427643						512	13	5	NaN	NaN	NaN	0.00017726	1	10746	10746		118.2	62.612	1	98978			1353	71	798	813	1041	1041					-0.03954805482203483
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.7931205561999	2	645.793121	1289.57169	1.4874	0.00096054	-7.6982	-0.0049715	-6.2108	-0.0040109	646.2882179065225	35.916	0.19276	35.916	35.82	36.012	0	1128	49	0.9424274	0.029340029	0.9424274	381.51157	0	11.87735						126	9	2	NaN	NaN	NaN	0.64158	1	18582	18582		12.049	0.87837	1	9991.3			1354	1657	799	814	1042	1042					-0.061514797362633544
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.7931205561999	2	645.793121	1289.57169	1.6897	0.0010912	-2.7654	-0.0017859	-1.0756	-0.00069464	645.7913034949582	36.302	0.24115	36.302	36.085	36.326	0	1125	46	0.9442611	0.027501822	0.9442611	382.25385	0	11.13324						245	11	3	NaN	NaN	NaN	0.66626	1	18583	18583		10.36	1.4411	1	41053			1355	1657	799	814	1043	1043					-0.061514797362633544
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.7931205561999	2	645.793121	1289.57169	1.7378	0.0011223	-2.4839	-0.0016041	-0.74609	-0.00048182	645.7913813095787	36.398	0.096489	36.398	36.374	36.471	0	1125	67	0.9442611	0.04033816	0.9442611	382.25385	0	16.32959						156	5	2	NaN	NaN	NaN	0.68732	1	18584	18584		8.9191	5.3397	1	45009			1356	1657	799	814	1044	1044					-0.061514797362633544
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.7931205561999	2	645.793121	1289.57169	1.6211	0.0010469	-1.9675	-0.0012706	-0.34634	-0.00022367	645.7921507396524	35.144	0.50672	35.144	35.023	35.53	0	1122	100	0.9460945	0.06050396	0.9460945	382.99606	0	24.493073						1336	22	6	NaN	NaN	NaN	0.00014814	1	18585	18585		106.42	70.19	1	1235200			1357	1657	799	814	1045	1045					-0.061514797362633544
AYNDNWFITF	10	Unmodified	_AYNDNWFITF_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.7931205561999	2	645.793121	1289.57169	2.2508	0.0014536	-2.2741	-0.0014686	-0.023303	-1.5049E-05	645.7920385481603	35.143	0.45837	35.143	35.07	35.529	-4.5776E-05	1119	103	0.9479278	0.062340796	0.94640833	383.7382	0	25.236664						1339	20	5	NaN	NaN	NaN	0.00071861	1	17756	17756		90.252	67.134	1	1248700			1358	1657	799	814	1046	1046					-0.061514797362633544
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.3058637907001	2	560.305864	1118.59717	1.4487	0.00081169	-1.4418	-0.00080783	0.006899	3.8655E-06	560.3047861490164	32.297	0.19309	32.297	32.249	32.442	0	1209	70	0.892844	0.042297065	0.892844	362.02414	0	17.15033						325	9	3	NaN	NaN	NaN	6.4939E-06	1	13627	13627		121.66	37.426	1	97599			1359	818	800	815	1047	1047					0.04261994786179457
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.3058637907001	2	560.305864	1118.59717	0.96831	0.00054255	-1.5581	-0.00087303	-0.58983	-0.00033049	560.3048966592794	32.296	0.21724	32.292	32.22	32.437	-0.0037613	1206	67	0.894683	0.040455878	0.89316356	362.7698	0	16.403778						291	10	3	NaN	NaN	NaN	0.12158	1	13221	13221		42.995	8.5408	1	92555			1360	818	800	815	1048	1048					0.04261994786179457
AYNKLNVFHW	10	Unmodified	_AYNKLNVFHW_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENST00000563762.5_1_15:72640446-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.22425698433335	3	431.224257	1290.65094	1.6913	0.00072933	-2.0243	-0.00087292	-0.33298	-0.00014359	431.5578777221546	23.272	0.19291	23.272	23.2	23.393	0	1359	49	0.8006399	0.029585183	0.8006399	486.1618	0	17.96463						208	9	4	NaN	NaN	NaN	0.10964	1	18603	18603		29.706	22.899	1	32293			1361	5962;7627	801	816	1049	1049					0.017242120085484203
AYNPMARDLF	10	Unmodified	_AYNPMARDLF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.28969079775	2	599.289691	1196.56483	1.0382	0.00062218	0.16929	0.00010145	1.2075	0.00072363	599.2888047031668	24.116	0.12061	24.103	24.079	24.199	-0.012749	1188	100	0.90571284	0.060608506	0.9041934	366.95068	0	24.555634						248	6	3	NaN	NaN	NaN	0.34981	1	15711	15711		25.681	2.5956	1	35743			1362	5808	802	817	1050	1050					-0.02559115888470842
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3160345465001	2	540.316035	1078.61752	1.5192	0.00082083	-1.3051	-0.00070519	0.21403	0.00011565	540.3155396887859	27.036	0.3137	27.036	26.843	27.157	0	1197	97	0.9001988	0.058870375	0.9001988	365.17096	0	23.881104						480	14	4	NaN	NaN	NaN	0.29681	1	11929	11929		19.118	5.3813	1	76296			1363	2785	803	818	1051	1051					0.08135210236650892
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.3160345465001	2	540.316035	1078.61752	1.1828	0.00063908	-0.68816	-0.00037183	0.49463	0.00026726	540.3157327267951	27.084	0.33786	27.074	26.88	27.218	-0.010124	1197	94	0.9001988	0.05702758	0.8986794	365.17096	0	23.133575						571	15	3	NaN	NaN	NaN	0.39244	1	11625	11625		14.042	1.0388	1	92403			1364	2785	803	818	1052	1052					0.08135210236650892
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7842328916	2	558.784233	1115.55391	1.7433	0.00097412	-1.1656	-0.00065134	0.57766	0.00032278	558.783398800637	32.514	0.31369	32.514	32.418	32.732	0	1212	115	0.8910048	0.06994635	0.8910048	361.2904	0	28.362305						1015	14	5	NaN	NaN	NaN	0.014046	1	13496	13496		80.639	41.18	1	496250			1365	4878	804	819	1053	1053					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.5611893166	1	1116.56119	1115.55391	1.2844	0.0014341	-0.10944	-0.0001222	1.175	0.0013119	1116.5609055098998	33.6	0.33774	33.6	33.311	33.648	0	69	61	1.5776473	0.03532493	1.5776473	319.86084	0	7.161957						348	15	3	NaN	NaN	NaN	0.12328	1	13497	13497		32.453	10.326	1	38249			1366	4878	804	819	1054	1054					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.5611893166	1	1116.56119	1115.55391	2.2979	0.0025658	0.19923	0.00022245	2.4972	0.0027882	1116.5612415551439	32.514	0.50676	32.514	32.418	32.925	0	72	175	1.5758814	0.102594495	1.5758814	319.5028	0	20.800537						1355	22	5	NaN	NaN	NaN	0.0023856	1	13499	13499		109.86	48.586	1	742240			1367	4878	804	819	1055	1055					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7842328916	2	558.784233	1115.55391	1.5241	0.00085166	-1.2751	-0.00071253	0.24899	0.00013913	558.7834202945523	32.513	0.36197	32.51	32.39	32.751	-0.0031052	1209	115	0.892844	0.06993884	0.8913246	362.03616	0	28.359222						1017	16	4	NaN	NaN	NaN	0.043119	1	13107	13107		49.833	19.223	1	513950			1368	4878	804	819	1056	1056					0.0007580500889616815
AYPEYLITF	9	Unmodified	_AYPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.5611893166	1	1116.56119	1115.55391	1.6669	0.0018612	-0.10619	-0.00011857	1.5607	0.0017426	1116.5614493085423	32.513	0.36197	32.51	32.438	32.8	-0.0031052	69	205	1.5776473	0.12034702	1.5761279	319.86084	0	24.39981						1334	16	6	NaN	NaN	NaN	0.0040938	1	13108	13108		104.71	52.087	1	689560			1369	4878	804	819	1057	1057					0.0007580500889616815
AYPFIGPFFF	10	Unmodified	_AYPFIGPFFF_					0	0	0		ENST00000529906.5_1_11:59944867-59947426:-|nuORF;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	ENST00000529906.5_1_11:59944867-59947426:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3051355092	2	603.305136	1204.59572	0.86453	0.00052157	-3.1812	-0.0019192	-2.3167	-0.0013977	603.3039740319263	42.434	0.11976	42.434	42.363	42.482	0	1164	40	0.9204082	0.02386576	0.9204082	372.8762	0	9.668518						84	6	2	NaN	NaN	NaN	0.090148	1	16610	16610		47.321	33.28	1	5987.1			1370	1750	805	820	1058	1058					0.0016040548807723098
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.26040204205	2	547.260402	1092.50625	2.2428	0.0012274	-1.9466	-0.0010653	0.29611	0.00016205	547.259542683494	23.345	0.48216	23.345	23.248	23.73	0	1194	133	0.902037	0.080999315	0.902037	365.85797	0	32.85257						1302	21	5	NaN	NaN	NaN	0.017076	1	12494	12494		75.698	38.396	1	566590			1371	713	806	821	1059	1059					-0.03630172462931114
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.26040204205	2	547.260402	1092.50625	2.4554	0.0013437	-2.0592	-0.0011269	0.39614	0.00021679	547.2594408559148	23.392	0.36188	23.379	23.283	23.644	-0.013296	1194	133	0.902037	0.08099055	0.9005176	365.85797	0	32.84903						997	16	3	NaN	NaN	NaN	0.011206	1	12180	12180		89.256	53.959	1	540590			1372	713	806	821	1060	1060					-0.03630172462931114
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(140)TF	0	0	1		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2578593531	2	555.257859	1108.50117	2.0329	0.0011288	-2.6197	-0.0014546	-0.5868	-0.00032583	555.2572026383382	19.516	0.40813	19.516	19.396	19.804	0	1251	130	0.8670771	0.07921404	0.8670771	351.61536	0	32.12271						1575	18	5	NaN	NaN	NaN	1.0592E-07	1	13215	13215		137.62	104.19	1	783840			1373	713	806	822	1061	1061		73			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(67)TF	0	0	1		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2578593531	2	555.257859	1108.50117	2.1835	0.0012124	-3.4287	-0.0019038	-1.2452	-0.00069142	555.2564640697119	19.515	0.43319	19.5	19.404	19.837	-0.014141	1254	133	0.8652351	0.08106065	0.86371565	350.86838	0	32.87152						1681	19	5	NaN	NaN	NaN	0.024221	1	12839	12839		66.656	33.231	1	734990			1374	713	806	822	1062	1062		73			-0.04874476325562682
AYPHRLNLF	9	Unmodified	_AYPHRLNLF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.80890800615	2	565.808908	1129.60326	1.6687	0.00094419	-0.5504	-0.00031142	1.1183	0.00063277	565.8082940223441	20.453	0.16828	20.453	20.405	20.573	0	1176	73	0.9130621	0.044100344	0.9130621	370.17813	0	17.879395						298	8	4	NaN	NaN	NaN	0.47587	1	14072	14072		10.605	0.85897	1	41775			1375	4204	807	823	1063	1063					0.04364557808344216
AYPHRLNLF	9	Unmodified	_AYPHRLNLF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.5416974929666	3	377.541697	1129.60326	1.3196	0.00049822	2.967	0.0011202	4.2866	0.0016184	377.5426651242033	20.477	0.19238	20.477	20.405	20.597	0	1503	58	0.711653	0.035313904	0.711653	432.77814	0	21.475464						149	9	2	NaN	NaN	NaN	0.20577	1	14073	14073		27.296	12.871	1	25931			1376	4204	807	823	1064	1064					0.04364557808344216
AYPIIFTAW	9	Unmodified	_AYPIIFTAW_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5716944233998	1	1081.57169	1080.56442	0.61055	0.00066035	1.4649	0.0015844	2.0755	0.0022448	1081.573027021826	35.385	0.24123	35.385	35.313	35.554	0	111	73	1.5529068	0.04243481	1.5529068	314.96942	0	8.606873						271	11	2	NaN	NaN	NaN	0.024986	1	12019	12019		65.672	46.554	1	40162			1377	1558	808	824	1065	1065					0.027358324539818568
AYPIIFTAW	9	Unmodified	_AYPIIFTAW_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5716944233998	1	1081.57169	1080.56442	1.0751	0.0011628	-1.3858	-0.0014988	-0.31063	-0.00033597	1081.5707285787273	35.384	0.21701	35.385	35.312	35.529	0.00053024	111	79	1.5529068	0.04596615	1.5513873	314.96945	0	9.32312						317	10	3	NaN	NaN	NaN	0.03623	1	11703	11703		52.758	25.462	1	41050			1378	1558	808	824	1066	1066					0.027358324539818568
AYPILYMHF	9	Unmodified	_AYPILYMHF_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7887953407501	2	577.788795	1153.56304	1.6095	0.00092996	-2.842	-0.0016421	-1.2325	-0.00071211	577.7870407200195	29.449	0.26548	29.449	29.329	29.594	0	1122	118	0.9460945	0.07159734	0.9460945	383.47424	0	29.02008						490	12	4	NaN	NaN	NaN	0.10053	1	14922	14922		35.745	16.581	1	69699			1379	4598	809	825	1067	1067					-0.007601249064236981
AYPILYMHF	9	Unmodified	_AYPILYMHF_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7887953407501	2	577.788795	1153.56304	1.1302	0.00065303	-3.2887	-0.0019002	-2.1585	-0.0012472	577.7863091600088	29.473	0.28952	29.466	29.345	29.635	-0.0070667	1119	136	0.9479278	0.08263016	0.94640833	384.2173	0	33.491943						485	13	4	NaN	NaN	NaN	0.16059	1	14430	14430		27.861	13.007	1	63452			1380	4598	809	825	1068	1068					-0.007601249064236981
AYPNSSLFMFF	11	Oxidation (M)	_AYPNSSLFM(Oxidation (M))FF_		AYPNSSLFM(1)FF		AYPNSSLFM(49)FF	0	0	1		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.30500651095	2	670.305007	1338.59546	1.0348	0.00069361	-2.0517	-0.0013753	-1.0169	-0.00068164	670.3037274090753	35.675	0.21703	35.675	35.578	35.795	0	1119	118	0.9479278	0.071412265	0.9479278	383.5892	0	28.897766						455	10	2	NaN	NaN	NaN	0.054678	1	19384	19384		48.65	33.188	1	51155			1381	4605	810	826	1069	1069		491			-0.06029382294104835
AYPNSSLFMFF	11	Oxidation (M)	_AYPNSSLFM(Oxidation (M))FF_		AYPNSSLFM(1)FF		AYPNSSLFM(46)FF	0	0	1		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.30500651095	2	670.305007	1338.59546	0.75489	0.00050601	-1.4379	-0.00096385	-0.68304	-0.00045785	670.3035899371162	35.673	0.19286	35.674	35.602	35.794	0.00053024	1119	124	0.9479278	0.07508254	0.94640833	383.5892	0	30.382965						582	9	3	NaN	NaN	NaN	0.065807	1	18521	18521		45.827	30.005	1	50808			1382	4605	810	826	1070	1070		491			-0.06029382294104835
AYPPAPFMHI	10	Unmodified	_AYPPAPFMHI_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.2864198273002	2	572.28642	1142.55829	2.1898	0.0012532	-1.0765	-0.00061609	1.1132	0.00063708	572.2869687898674	25.926	0.16891	25.926	25.853	26.022	0	1197	76	0.9001988	0.045960188	0.9001988	364.91312	0	18.63086						324	7	4	NaN	NaN	NaN	0.25514	1	14544	14544		30.791	7.7053	1	53463			1383	3436	811	827	1071	1071					-0.007290090491551382
AYPPAPFMHI	10	Unmodified	_AYPPAPFMHI_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2864198273002	2	572.28642	1142.55829	1.8944	0.0010842	-0.51139	-0.00029266	1.383	0.0007915	572.2873984055896	25.925	0.31375	25.914	25.721	26.034	-0.0116	1197	91	0.9001988	0.055155218	0.8986794	364.91312	0	22.358215						408	14	4	NaN	NaN	NaN	0.25514	1	14065	14065		30.791	7.4567	1	60609			1384	3436	811	827	1072	1072					-0.007290090491551382
AYPTAYPSF	9	Unmodified	_AYPTAYPSF_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-3|SMAP2;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4723743093001	1	1016.47237	1015.4651	2.2237	0.0022604	-2.0597	-0.0020936	0.16405	0.00016675	1016.4714796687337	24.96	0.072378	24.948	24.948	25.02	-0.012394	192	52	1.5050892	0.030152082	1.5035697	305.5175	0	6.120575						80	4	2	NaN	NaN	NaN	0.39244	1	9004	9004		14.042	2.4931	1	5177.7			1385	13660	812	828	1073	1073					-0.04201610230757069
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.29476778815	2	568.294768	1134.57498	1.1443	0.00065029	-1.984	-0.0011275	-0.83972	-0.00047721	568.2938465162534	27.06	0.2655	27.049	26.929	27.194	-0.010126	1200	58	0.89836043	0.034929693	0.896841	364.19846	0	14.160645						443	12	4	NaN	NaN	NaN	0.16939	1	13801	13801		27.296	9.5159	1	118640			1386	865	813	829	1074	1074					0.013078151084073397
AYPTVKFYF	9	Unmodified						0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.294768	1134.57498	1.7234	0.00097941	-1.7431	-0.00099057	-0.01964	-1.1161E-05	568.293609976424	27.036	0.28956	27.036	26.964	27.253	0	1200	61	0.89836043	0.03676611	0.89836043	364.19846		14.905121	-0.0066336	0.00011356	0.00075972	NaN	27.296	453	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125800			1387	865	813	829							0.013078151084073397
AYPVWTAQL	9	Unmodified	_AYPVWTAQL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5462079544	1	1048.54621	1047.53893	2.0524	0.0021521	-3.4194	-0.0035854	-1.367	-0.0014333	1048.54554508985	28.677	0.21718	28.677	28.629	28.846	0	165	70	1.5210435	0.040759444	1.5210435	308.6294	0	8.270355						277	10	3	NaN	NaN	NaN	0.00020136	1	10531	10531		116.74	72.434	1	35019			1388	974	814	830	1075	1075					0.01706357931561797
AYPVWTAQL	9	Unmodified	_AYPVWTAQL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5462079544	1	1048.54621	1047.53893	1.3098	0.0013734	-3.5928	-0.0037672	-2.283	-0.0023939	1048.5458162390485	28.676	0.1689	28.668	28.62	28.789	-0.0083504	165	58	1.5210435	0.033660054	1.5195241	308.6294	0	6.829834						233	8	3	NaN	NaN	NaN	0.018156	1	10316	10316		74.332	34.873	1	29045			1389	974	814	830	1076	1076					0.01706357931561797
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5047370702	1	1088.50474	1087.49746	2.1759	0.0023685	-0.46001	-0.00050073	1.7159	0.0018677	1088.5036588315606	26.674	0.24183	26.674	26.625	26.867	0	75	130	1.5741152	0.07602501	1.5741152	319.24536	0	15.418579						925	11	4	NaN	NaN	NaN	0.0092442	1	12264	12264		93.929	61.151	1	143490			1390	4937	815	831	1077	1077					-0.042788228277458984
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7560067684001	2	544.756007	1087.49746	1.2857	0.0007004	0.060999	3.323E-05	1.3467	0.00073363	544.755879689326	26.673	0.21719	26.663	26.59	26.808	-0.010643	1224	94	0.883646	0.05708307	0.88212657	358.4193	0	23.153717						424	10	4	NaN	NaN	NaN	0.14787	1	11954	11954		28.896	8.4469	1	87252			1391	4937	815	831	1078	1078					-0.042788228277458984
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5047370702	1	1088.50474	1087.49746	1.1659	0.0012691	1.018	0.0011081	2.1839	0.0023772	1088.50538125882	26.673	0.21718	26.663	26.614	26.832	-0.010643	72	136	1.5758814	0.07956946	1.5743619	319.60358	0	16.137451						881	10	4	NaN	NaN	NaN	0.00065562	1	11955	11955		115.07	62.446	1	140880			1392	4937	815	831	1079	1079					-0.042788228277458984
AYPYNFSNL	9	Unmodified						0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.756007	1087.49746	1.5694	0.00085493	0.62045	0.00033799	2.1898	0.0011929	544.7564147318707	26.65	0.26597	26.65	26.625	26.891	0	1227	85	0.88180584	0.051550567	0.88180584	357.67288		20.909607	-0.0065785	0.00028765	-0.00016038	NaN	28.896	353	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84357			1393	4937	815	831							-0.042788228277458984
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.790380902	2	556.790381	1111.56621	1.713	0.00095378	4.7866	0.0026652	6.4996	0.0036189	556.7937539452452	21.826	0.36132	21.826	21.705	22.067	0	1200	85	0.89836043	0.051511586	0.89836043	364.2889	0	20.888153						447	16	3	NaN	NaN	NaN	0.077759	1	13346	13346		39.039	15.189	1	84357			1394	3279	816	832	1080	1080					0.014888414719507637
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.790380902	2	556.790381	1111.56621	1.4329	0.00079782	5.906	0.0032884	7.3389	0.0040862	556.7945262252431	21.826	0.21673	21.812	21.764	21.98	-0.013895	1200	85	0.89836043	0.051511586	0.896841	364.2889	0	20.888153						381	10	4	NaN	NaN	NaN	0.1507	1	12969	12969		28.495	8.0466	1	80858			1395	3279	816	832	1081	1081					0.014888414719507637
AYQHAFLYI	9	Unmodified	_AYQHAFLYI_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2900167612501	2	563.290017	1124.56548	2.3509	0.0013242	-0.91123	-0.00051329	1.4396	0.00081093	563.2890879186969	25.66	0.16891	25.66	25.612	25.781	0	1200	73	0.89836043	0.044119358	0.89836043	364.23737	0	17.888062						305	8	3	NaN	NaN	NaN	0.16171	1	13870	13870		27.789	9.7543	1	65779			1396	5574	817	833	1082	1082					0.008180468229056714
AYQHAFLYI	9	Unmodified	_AYQHAFLYI_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2900167612501	2	563.290017	1124.56548	2.0503	0.0011549	-0.60468	-0.00034061	1.4456	0.00081431	563.289271434971	25.684	0.28957	25.672	25.6	25.89	-0.0116	1200	82	0.89836043	0.04963696	0.896841	364.23737	0	20.125153						369	13	3	NaN	NaN	NaN	0.39244	1	13443	13443		14.042	0.57854	1	72332			1397	5574	817	833	1083	1083					0.008180468229056714
AYQHAFLYI	9	Unmodified						0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.290017	1124.56548	2.1867	0.0012318	-5.1376	-0.0028939	-2.9509	-0.0016622	563.7895413626117	25.539	0.12068	25.528	25.455	25.576	-0.0116	1215	40	0.8891654	0.023909628	0.88764596	360.5093		9.694061	-0.06624	-0.0036142	-0.0053572	NaN	27.789	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5606.8			1398	5574	817	833							0.008180468229056714
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3134918575502	2	584.313492	1166.61243	2.7334	0.0015972	-2.6885	-0.0015709	0.044859	2.6212E-05	584.3112508319622	29.691	0.41026	29.691	29.642	30.053	0	1146	178	0.93142134	0.10844284	0.93142134	377.47696	0	43.94861						1345	18	6	NaN	NaN	NaN	0.011118	1	15370	15370		89.521	34.108	1	2254700			1399	5332;3279	818	834	1084	1084					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3;ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3134918575502	2	584.313492	1166.61243	2.2769	0.0013304	-2.2354	-0.0013062	0.04152	2.4261E-05	584.3117340411284	29.738	0.48259	29.731	29.586	30.069	-0.0070648	1143	148	0.9332562	0.08997512	0.93173677	378.22058	0	36.464203						1459	21	6	NaN	NaN	NaN	0.025843	1	14837	14837		64.55	9.1369	1	2339700			1400	5332;3279	818	834	1085	1085					0.03578906374059443
AYQHLLRSMYW	11	Unmodified	_AYQHLLRSMYW_					0	0	0			REV__ENSG00000143994|ENST00000316470|ABHD1	REV__ENSG00000143994|ENST00000316470|ABHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.91157309426677	3	489.911573	1466.71289	1.869	0.00091566	7.4505	0.0036501	9.3195	0.0045657	489.9153614248353	18.482	0.12004	18.468	18.396	18.516	-0.01395	1419	34	0.76361835	0.020385087	0.7620989	463.09262	0	12.362427						84	6	2	NaN	NaN	NaN	0.77082	1	19471	19471		1.8502	0.48058	1	7558.7	+		1401	9887	819	835	1086	1086					-0.0017980463458115992
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2952991044	2	548.295299	1094.57605	1.4041	0.00076985	0.85765	0.00047025	2.2617	0.0012401	548.295959935576	19.252	0.168	19.252	19.228	19.396	0	1221	55	0.885486	0.033114612	0.885486	359.13657	0	13.430664						171	8	2	NaN	NaN	NaN	0.11656	1	12617	12617		33.425	14.307	1	22251			1402	3377	820	836	1087	1087					0.032540294773070855
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2952991044	2	548.295299	1094.57605	1.4839	0.00081364	-0.73258	-0.00040167	0.75137	0.00041197	548.2947808701329	19.298	0.1442	19.284	19.236	19.38	-0.014141	1224	67	0.883646	0.040477753	0.88212657	358.3903	0	16.417023						181	7	2	NaN	NaN	NaN	0.16939	1	12289	12289		27.296	9.4972	1	22052			1403	3377	820	836	1088	1088					0.032540294773070855
AYQLMTDVF	9	Unmodified	_AYQLMTDVF_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.26006769105	2	544.260068	1086.50558	1.392	0.00075761	-1.0642	-0.00057919	0.32783	0.00017843	544.2596693263155	30.439	0.19306	30.439	30.342	30.535	0	1251	94	0.8670771	0.057113945	0.8670771	351.70273	0	23.166473						343	9	3	NaN	NaN	NaN	0.20577	1	12235	12235		24.961	9.7856	1	44617			1404	606	821	837	1089	1089					-0.034210119026511165
AYQLMTDVF	9	Unmodified	_AYQLMTDVF_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5128589155	1	1087.51286	1086.50558	1.863	0.0020261	3.9408	0.0042857	5.8038	0.0063117	1088.5219576102816	30.439	0.2172	30.439	30.342	30.56	0	81	133	1.5705823	0.07782197	1.5705823	318.5325	0	15.783203						484	10	3	NaN	NaN	NaN	0.16939	1	12238	12238		27.296	8.1779	1	74019			1405	606	821	837	1090	1090					-0.034210119026511165
AYQLMTDVF	9	Unmodified	_AYQLMTDVF_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.26006769105	2	544.260068	1086.50558	1.0547	0.00057401	-2.343	-0.0012752	-1.2884	-0.00070121	544.2586038941514	30.438	0.19304	30.432	30.36	30.553	-0.0057545	1260	88	0.8615505	0.053417623	0.8600311	349.46106	0	21.667175						376	9	3	NaN	NaN	NaN	0.14787	1	11921	11921		28.896	9.7773	1	50646			1406	606	821	837	1091	1091					-0.034210119026511165
AYQLMTDVF	9	Unmodified	_AYQLMTDVF_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.5128589155	1	1087.51286	1086.50558	0.89572	0.00097411	3.7397	0.004067	4.6354	0.0050411	1088.5221633888596	30.438	0.19305	30.432	30.384	30.577	-0.0057545	81	100	1.5705823	0.058326244	1.5690628	318.5325	0	11.829224						286	9	2	NaN	NaN	NaN	0.03618	1	11925	11925		52.78	21.219	1	56867			1407	606	821	837	1092	1092					-0.034210119026511165
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(53)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5077735375999	1	1103.50777	1102.5005	1.6898	0.0018647	0.37687	0.00041588	2.0667	0.0022806	1103.5091193363332	26.601	0.12069	26.601	26.577	26.698	0	87	70	1.5670487	0.040638685	1.5670487	317.75803	0	8.240509						195	6	3	NaN	NaN	NaN	0.03618	1	12933	12933		52.78	13.321	1	21398			1408	606	821	838	1093	1093		61			-0.04665315765282685
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(92)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5077735375999	1	1103.50777	1102.5005	1.38	0.0015229	0.42838	0.00047272	1.8084	0.0019956	1103.5074939553951	26.625	0.12063	26.614	26.566	26.687	-0.010643	84	70	1.5688156	0.040634394	1.5672961	318.1163	0	8.239624						162	6	2	NaN	NaN	NaN	0.010404	1	12597	12597		91.563	44.427	1	19632			1409	606	821	838	1094	1094		61			-0.04665315765282685
AYQLMVDVF	9	Unmodified	_AYQLMVDVF_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5335943576	1	1085.53359	1084.52632	1.5969	0.0017335	0.1508	0.00016369	1.7477	0.0018972	1085.5341174514356	32.756	0.26545	32.756	32.683	32.949	0	72	112	1.5758814	0.06538916	1.5758814	319.61453	0	13.261993						620	12	4	NaN	NaN	NaN	0.084037	1	12162	12162		38.131	14.28	1	126920			1410	2884	822	839	1095	1095					-0.012564215229986075
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(76)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.5285089796998	1	1101.52851	1100.52123	1.7309	0.0019067	-2.0417	-0.0022489	-0.31074	-0.00034229	1101.52853417484	29.787	0.16893	29.787	29.763	29.932	0	66	79	1.579413	0.0459224	1.579413	320.27234	0	9.312134						254	8	3	NaN	NaN	NaN	0.017076	1	12859	12859		75.698	42.273	1	23211			1411	2884	822	840	1096	1096		333			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(61)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.26789272315	2	551.267893	1100.52123	1.7719	0.00097678	-1.3319	-0.00073422	0.43999	0.00024255	551.2674544823204	29.787	0.24132	29.787	29.739	29.98	0	1275	64	0.85233563	0.038702607	0.85233563	345.66818	0	15.696014						514	11	5	NaN	NaN	NaN	0.028349	1	12861	12861		61.271	26.832	1	272780			1412	2884	822	840	1097	1097		333			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(40)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.5285089796998	1	1101.52851	1100.52123	1.4207	0.001565	-1.8922	-0.0020843	-0.47143	-0.00051929	1101.5247337869944	29.786	0.072365	29.779	29.755	29.828	-0.0070648	63	70	1.5811787	0.04062581	1.5796592	320.63034	0	8.238068						188	4	3	NaN	NaN	NaN	0.070055	1	12525	12525		40.154	8.4784	1	20498			1413	2884	822	840	1098	1098		333			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(53)VDVF	0	0	1		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.26789272315	2	551.267893	1100.52123	1.4702	0.00081048	-1.8364	-0.0010124	-0.36624	-0.00020189	551.2671101212288	29.786	0.24127	29.779	29.731	29.972	-0.0070648	1272	88	0.854179	0.053423405	0.8526596	346.41577	0	21.666077						507	11	5	NaN	NaN	NaN	0.036546	1	12526	12526		52.624	21.063	1	282220			1414	2884	822	840	1099	1099		333			-0.025007253856074385
AYQSIQNYL	9	Unmodified	_AYQSIQNYL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5418508579999	1	1099.54185	1098.53457	2.0712	0.0022774	-1.0659	-0.001172	1.0053	0.0011054	1099.5402204332536	25.443	0.096529	25.443	25.419	25.515	0	69	55	1.5776473	0.03179586	1.5776473	319.92142	0	6.4476624						99	5	2	NaN	NaN	NaN	0.19268	1	12781	12781		25.801	5.2455	1	6400.3			1415	2851	823	841	1100	1100					-0.010751512820206699
AYRLSRKQG	9	Unmodified	_AYRLSRKQG_					0	0	0		ENST00000528145.5_1_11:46666897-46677909:+|nuORF;ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8094393224001	2	539.809439	1077.60433	1.8985	0.0010248	1.9586	0.0010573	3.8571	0.0020821	539.8104185056603	15.844	0.095778	15.831	15.807	15.903	-0.012611	1251	70	0.8670771	0.042342782	0.8655577	351.7391	0	17.176788						259	5	3	NaN	NaN	NaN	0.55027	1	11571	11571		7.5404	0	1	30428			1416	4989	824	842	1101	1101					0.0686277217728275
AYRPQFCLSK	10	Unmodified	_AYRPQFCLSK_					0	0	0		ENSG00000197683|ENST00000360542|KRTAP26-1	ENSG00000197683|ENST00000360542|KRTAP26-1	ENSG00000197683|ENST00000360542|KRTAP26-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.81333306955	2	606.813333	1211.61211	1.4302	0.00086784	-7.6933	-0.0046684	-6.2631	-0.0038005	606.8076637879758	23.416	0.09654	23.403	23.379	23.476	-0.013294	1155	61	0.92591566	0.036714554	0.9243962	375.0828	0	14.872864						152	5	3	NaN	NaN	NaN	0.75466	1	16093	16093		4.3102	0.74037	1	15367			1417	5721	825	843	1102	1102					0.01477163382537583
AYRTEEQGRR	10	Unmodified	_AYRTEEQGRR_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3208994657	2	633.320899	1264.62725	1.8736	0.0011866	-0.45274	-0.00028673	1.4208	0.00089984	633.3210250216351	25.226	0.12067	25.226	25.202	25.322	0	1113	91	0.9515937	0.055000663	0.9515937	385.30273	0	22.269897						297	6	4	NaN	NaN	NaN	0.60686	1	18095	18095		14.425	2.3763	1	38677			1418	1066	826	844	1103	1103					0.0055174650408389425
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.2816604129	2	492.28166	982.548768	1.7339	0.00085357	-3.142	-0.0015468	-1.4081	-0.0006932	492.28036460710194	24.526	0.31355	24.526	24.478	24.791	0	1311	76	0.83019954	0.0461244	0.83019954	337.19025	0	18.733704						472	14	5	NaN	NaN	NaN	0.012861	1	7975	7975		84.233	46.102	1	206210			1419	5557	827	845	1104	1104					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5560443592001	1	983.556044	982.548768	1.6132	0.0015867	-0.29034	-0.00028556	1.3229	0.0013011	983.5558618627828	24.526	0.072294	24.526	24.502	24.574	0	141	55	1.5352125	0.03186655	1.5352125	311.77203	0	6.4714966						103	4	2	NaN	NaN	NaN	0.060816	1	7976	7976		42.318	17.756	1	10240			1420	5557	827	845	1105	1105					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2816604129	2	492.28166	982.548768	1.0899	0.00053652	-1.7649	-0.00086883	-0.67505	-0.00033232	492.2809278360941	24.55	0.33773	24.538	24.489	24.827	-0.012394	1311	70	0.83019954	0.042443633	0.8286801	337.19025	0	17.238739						444	15	4	NaN	NaN	NaN	0.0073225	1	7804	7804		97.85	53.211	1	191410			1421	5557	827	845	1106	1106					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5560443592001	1	983.556044	982.548768	1.7436	0.0017149	-0.085619	-8.4211E-05	1.658	0.0016307	983.5553368646785	24.55	0.072311	24.538	24.514	24.586	-0.012394	138	52	1.5369828	0.030094624	1.5354633	312.13156	0	6.1116333						91	4	2	NaN	NaN	NaN	0.03618	1	7805	7805		52.78	28.218	1	8360.3			1422	5557	827	845	1107	1107					0.05679545936948216
AYSEAIFEL	9	Unmodified	_AYSEAIFEL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5091537461	1	1042.50915	1041.50188	1.8534	0.0019322	1.1286	0.0011766	2.982	0.0031088	1042.5094237112132	30.56	0.362	30.56	30.463	30.825	0	120	175	1.5476005	0.10275757	1.5476005	314.0416	0	20.851746						1058	16	3	NaN	NaN	NaN	0.0072287	1	10267	10267		98.041	33.491	1	466980			1423	1608	828	846	1108	1108					-0.01721358404847706
AYSEAIFEL	9	Unmodified	_AYSEAIFEL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5091537461	1	1042.50915	1041.50188	1.6765	0.0017478	1.0037	0.0010464	2.6802	0.0027942	1042.5094283475432	30.559	0.38603	30.553	30.456	30.842	-0.0057564	117	178	1.5493695	0.10452378	1.54785	314.40057	0	21.210114						1141	17	3	NaN	NaN	NaN	0.016254	1	10063	10063		76.739	21.246	1	480840			1424	1608	828	846	1109	1109					-0.01721358404847706
AYSEPCGLRG	10	Unmodified	_AYSEPCGLRG_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4829557706	1	1052.48296	1051.47568	1.3462	0.0014169	-9.5733	-0.010076	-8.2271	-0.0086589	1052.473355383484	29.593	0.19302	29.586	29.49	29.683	-0.0070667	141	73	1.5352125	0.042502284	1.5336931	311.48923	0	8.623596						350	9	3	NaN	NaN	NaN	0.53991	1	10456	10456		17.799	3.374	1	50589			1425	4601	829	847	1110	1110					-0.04799950847973378
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.8697026879	3	385.869703	1154.58728	1.678	0.00064747	-2.4938	-0.00096227	-0.81582	-0.0003148	385.8687370211732	19.684	0.19213	19.684	19.636	19.828	0	1458	46	0.7395112	0.027840078	0.7395112	449.60245	0	16.925995						245	9	4	NaN	NaN	NaN	0.34922	1	14971	14971		15.822	6.2103	1	39952			1426	952	830	848	1111	1111					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.30091579855	2	578.300916	1154.58728	1.9716	0.0011402	-1.9315	-0.001117	0.040066	2.317E-05	578.2996158884588	19.684	0.19213	19.684	19.636	19.828	0	1158	46	0.92408	0.027537405	0.92408	374.5473	0	11.1614685						229	9	3	NaN	NaN	NaN	0.01564	1	14973	14973		87.778	48.319	1	41393			1427	952	830	848	1112	1112					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.30091579855	2	578.300916	1154.58728	1.5228	0.00088061	0.15536	8.9845E-05	1.6781	0.00097046	578.3006913408358	19.924	0.28885	19.909	19.765	20.054	-0.014141	1158	103	0.92408	0.062482238	0.9225606	374.5473	0	25.325226						420	13	3	NaN	NaN	NaN	0.13196	1	14477	14477		23.118	0	1	62106			1428	952	830	848	1113	1113					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.8697026879	3	385.869703	1154.58728	1.5228	0.00058759	0.41279	0.00015928	1.9356	0.00074687	385.86991343811997	19.924	0.26478	19.909	19.765	20.03	-0.014141	1461	55	0.7376554	0.03341353	0.73613596	448.47415	0	20.314484						237	12	2	NaN	NaN	NaN	0.33202	1	14478	14478		16.858	8.5045	1	44709			1429	952	830	848	1114	1114					0.01616851571452571
AYSIVAGVF	9	Unmodified	_AYSIVAGVF_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4981951293001	1	926.498195	925.490919	2.3661	0.0021922	-0.74628	-0.00069143	1.6198	0.0015008	926.4972866691121	30.198	0.21719	30.198	30.149	30.366	0	306	130	1.4375578	0.07655108	1.4375578	292.1891	0	15.559296						686	10	4	NaN	NaN	NaN	0.032417	1	6505	6505		55.947	6.1145	1	238930			1430	576	831	849	1115	1115					0.025192840115323634
AYSIVAGVF	9	Unmodified	_AYSIVAGVF_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.4981951293001	1	926.498195	925.490919	1.0006	0.00092706	-0.46818	-0.00043377	0.53242	0.00049329	926.4975196140125	30.197	0.19303	30.19	30.142	30.335	-0.0064106	303	142	1.4393384	0.08368993	1.437819	292.55103	0	17.010315						676	9	4	NaN	NaN	NaN	0.020004	1	6376	6376		71.993	16.045	1	234870			1431	576	831	849	1116	1116					0.025192840115323634
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.28694275605	2	519.286943	1036.55933	1.0737	0.00055757	-2.0466	-0.0010628	-0.97288	-0.0005052	519.2855355691669	34.975	0.16878	34.975	34.927	35.096	0	1230	61	0.8799654	0.036821842	0.8799654	357.14575	0	14.944641						235	8	4	NaN	NaN	NaN	0.10956	1	10073	10073		34.439	3.6477	1	38504			1432	3266	832	850	1117	1117					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5666090455	1	1037.56661	1036.55933	1.018	0.0010562	1.0075	0.0010453	2.0255	0.0021015	1037.5679350638081	34.999	0.14467	34.999	34.927	35.072	0	93	100	1.5635144	0.05834472	1.5635144	317.29065	0	11.840149						318	7	3	NaN	NaN	NaN	0.10956	1	10074	10074		34.439	13.883	1	39727			1433	3266	832	850	1118	1118					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.28694275605	2	519.286943	1036.55933	1.1198	0.00058151	-2.1482	-0.0011155	-1.0284	-0.00053404	519.2857299873915	34.974	0.19301	34.974	34.926	35.119	-4.5776E-05	1227	64	0.88180584	0.038664997	0.8802864	357.8927	0	15.6927185						215	9	3	NaN	NaN	NaN	0.014046	1	9865	9865		80.639	33.503	1	36848			1434	3266	832	850	1119	1119					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	ENST00000561693.5_1_15:75648526-75649300:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5666090455	1	1037.56661	1036.55933	1.1134	0.0011552	-0.91363	-0.00094795	0.19977	0.00020727	1037.5662426593024	34.998	0.14476	34.998	34.926	35.07	-4.5776E-05	87	124	1.5670487	0.07251203	1.5655292	318.0079	0	14.715179						360	7	3	NaN	NaN	NaN	0.032764	1	9866	9866		55.494	21.795	1	42326			1435	3266	832	850	1120	1120					0.042515285913850676
AYSPAIQMF	9	Unmodified	_AYSPAIQMF_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2495030047501	2	514.249503	1026.48445	2.0606	0.0010597	2.5748	0.0013241	4.6354	0.0023838	514.2491617531679	28.291	0.096493	28.291	28.267	28.363	0	1293	55	0.84127116	0.033196986	0.84127116	341.48508	0	13.475189						116	5	3	NaN	NaN	NaN	0.31737	1	9624	9624		17.799	6.2505	1	17580			1436	1385	833	851	1121	1121					-0.027729772114980733
AYSPAIQMF	9	Unmodified	_AYSPAIQMF_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2495030047501	2	514.249503	1026.48445	0.92872	0.00047759	4.5962	0.0023636	5.5249	0.0028412	514.250702729777	28.29	0.12064	28.281	28.257	28.378	-0.0089779	1290	67	0.84311575	0.04056537	0.8415963	342.2338	0	16.466095						147	6	3	NaN	NaN	NaN	0.14787	1	9434	9434		28.896	14.854	1	20152			1437	1385	833	851	1122	1122					-0.027729772114980733
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.30566682545	2	565.305667	1128.59678	2.3316	0.0013181	-1.0033	-0.00056716	1.3283	0.00075092	565.3056621835663	26.505	0.26549	26.505	26.481	26.746	0	1170	97	0.91673553	0.058806837	0.91673553	371.67142	0	23.84198						795	12	5	NaN	NaN	NaN	0.015029	1	14037	14037		78.289	38.136	1	244960			1438	2730	834	852	1123	1123					0.03762619856979654
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.30566682545	2	565.305667	1128.59678	1.5494	0.00087589	-0.76954	-0.00043503	0.77987	0.00044087	565.3055473032686	26.553	0.26541	26.542	26.47	26.735	-0.010645	1170	91	0.91673553	0.055125415	0.9152161	371.67142	0	22.349457						775	12	6	NaN	NaN	NaN	0.0028258	1	13595	13595		108.53	44.573	1	247850			1439	2730	834	852	1124	1124					0.03762619856979654
AYSPRHYVI	9	Unmodified	_AYSPRHYVI_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2930907664501	2	553.293091	1104.57163	1.4198	0.00078555	1.8026	0.00099735	3.2223	0.0017829	553.2924396843582	15.966	0.095898	15.966	15.918	16.014	0	1197	34	0.9001988	0.020222485	0.9001988	365.0627	0	8.200928						69	5	2	NaN	NaN	NaN	0.5168	1	13044	13044		8.9191	4.9506	1	4917.8			1440	4835	835	853	1125	1125					0.023525650544115706
AYSQALCPL	9	Unmodified	_AYSQALCPL_					0	0	0			REV__ANO3|p.L330Hfs*14|1|0.16|ENSG00000134343|chr11:26537418-26537419|TT/-|frameshift_variant	REV__ANO3|p.L330Hfs*14|1|0.16|ENSG00000134343|chr11:26537418-26537419|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4760794787	1	965.476079	964.468803	0.72384	0.00069885	-3.311	-0.0031966	-2.5871	-0.0024978	965.4729942843733	32.175	0.14478	32.172	32.148	32.292	-0.0037613	279	58	1.4535767	0.033799767	1.4520572	295.26993	0	6.8658447						222	7	3	NaN	NaN	NaN	0.23112	1	7310	7310		23.334	1.4994	1	25246	+		1441	8135	836	854	1126	1126					-0.014852637285684978
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.28800538855	2	581.288005	1160.56146	2.2067	0.0012827	-2.2959	-0.0013346	-0.089157	-5.1826E-05	581.2862862584093	18.892	0.21595	18.892	18.844	19.06	0	1221	79	0.885486	0.047837377	0.885486	358.8826	0	19.388214						289	10	3	NaN	NaN	NaN	0.16939	1	15162	15162		27.296	16.126	1	41886			1442	64	837	855	1127	1127					-0.012400426708154555
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.28800538855	2	581.288005	1160.56146	1.709	0.0009934	-2.4108	-0.0014014	-0.70182	-0.00040796	581.28666810027	18.938	0.21622	18.924	18.876	19.092	-0.014059	1221	70	0.885486	0.042310774	0.88396657	358.8826	0	17.148346						274	10	3	NaN	NaN	NaN	0.13999	1	14647	14647		30.035	5.4734	1	42705			1443	64	837	855	1128	1128					-0.012400426708154555
AYSTVPGYYSW	11	Unmodified	_AYSTVPGYYSW_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.2929533807	2	647.292953	1292.57135	1.9254	0.0012463	-2.7718	-0.0017942	-0.8464	-0.00054787	647.2915415062517	27.205	0.41026	27.205	27.109	27.519	0	1143	91	0.9332562	0.055042148	0.9332562	377.78958	0	22.281525						1184	18	5	NaN	NaN	NaN	5.6213E-18	1	18625	18625		131.88	99.424	1	299960			1444	4428	838	856	1129	1129					-0.06322899456085906
AYSTVPGYYSW	11	Unmodified	_AYSTVPGYYSW_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.2929533807	2	647.292953	1292.57135	1.724	0.0011159	-2.0859	-0.0013502	-0.36196	-0.00023429	647.2916551768636	27.228	0.36198	27.218	27.098	27.46	-0.010124	1143	94	0.9332562	0.056879938	0.93173677	377.78958	0	23.025482						1058	16	4	NaN	NaN	NaN	2.932E-07	1	17791	17791		93.929	60.503	1	296590			1445	4428	838	856	1130	1130					-0.06322899456085906
AYSTVPGYYSW	11	Unmodified						0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	647.292953	1292.57135	1.4979	0.00096958	-2.7345	-0.00177	-1.2366	-0.00080043	647.7917683824603	27.518	0.072428	27.508	27.508	27.581	-0.009552	1149	55	0.92958635	0.033032417	0.9280669	376.304		13.371796	0.15168	4.6403E-05	-0.0025947	NaN	131.88	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7096.3			1446	4428	838	856							-0.06322899456085906
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7565380846501	2	530.756538	1059.49852	1.9884	0.0010554	-1.9831	-0.0010525	0.0052876	2.8064E-06	530.7555064344983	15.63	0.33602	15.63	15.582	15.918	0	1263	58	0.85970795	0.035016656	0.85970795	348.82495	0	14.207947						367	15	3	NaN	NaN	NaN	0.024221	1	11053	11053		66.656	34.204	1	109870			1447	2147	839	857	1131	1131					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7565380846501	2	530.756538	1059.49852	1.6209	0.00086033	-1.4104	-0.0007486	0.21051	0.00011173	530.7555374731874	15.652	0.33549	15.639	15.591	15.927	-0.012611	1263	61	0.85970795	0.03686565	0.8581885	348.82495	0	14.95816						436	15	3	NaN	NaN	NaN	0.02857	1	10817	10817		60.982	26.543	1	124590			1448	2147	839	857	1132	1132					-0.028846084588622034
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5298891881998	1	1076.52989	1075.52261	1.3111	0.0014115	-8.173	-0.0087984	-6.8618	-0.007387	1076.520799102381	32.563	0.096519	32.563	32.539	32.635	0	117	100	1.5493695	0.058369517	1.5493695	314.27057	0	11.839539						88	5	2	NaN	NaN	NaN	0.01047	1	11781	11781		91.429	47.126	1	5895.2			1449	4118	840	858	1133	1133					-0.012127680251978745
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5298891881998	1	1076.52989	1075.52261	1.3565	0.0014603	2.0054	0.0021589	3.3619	0.0036192	1076.5304327596916	32.683	0.19306	32.683	32.611	32.804	0	90	118	1.5652816	0.06896758	1.5652816	317.49814	0	13.989227						439	9	3	NaN	NaN	NaN	0.00050979	1	11789	11789		115.51	71.207	1	67433			1450	4118	840	858	1134	1134					-0.012127680251978745
AYSVLFETF	9	Unmodified	_AYSVLFETF_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5298891881998	1	1076.52989	1075.52261	1.386	0.0014921	1.926	0.0020734	3.312	0.0035654	1076.530458911492	32.682	0.19308	32.679	32.583	32.776	-0.0031052	87	103	1.5670487	0.060109615	1.5655292	317.85657	0	12.192505						462	9	4	NaN	NaN	NaN	0.00010594	1	11479	11479		122.55	75.414	1	64363			1451	4118	840	858	1135	1135					-0.012127680251978745
AYTALKFYL	9	Unmodified	_AYTALKFYL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.30259282025	2	545.302593	1088.59063	1.1581	0.00063153	0.45221	0.00024659	1.6103	0.00087812	545.3028289765268	27.109	0.14482	27.109	26.988	27.133	0	1212	40	0.8910048	0.023909628	0.8910048	361.3996	0	9.697968						107	7	3	NaN	NaN	NaN	0.35794	1	12339	12339		15.463	1.4211	1	12248			1452	2658	841	859	1136	1136					0.04988101625440322
AYTALKFYL	9	Unmodified						0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.302593	1088.59063	1.1815	0.00064428	0.87258	0.00047582	2.0541	0.0011201	545.302965763103	27.132	0.12066	27.122	27.074	27.194	-0.010126	1212	49	0.8910048	0.029425621	0.88948536	361.39957		11.935303	0.0066132	0.00027585	-0.00075972	NaN	15.463	124	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11697			1453	2658	841	859							0.04988101625440322
AYTDCIPQL	9	Unmodified	_AYTDCIPQL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.4815587871	1	1023.48156	1022.47428	2.4603	0.0025181	1.3367	0.0013681	3.7971	0.0038862	1023.4839987372064	27.857	0.28958	27.857	27.712	28.001	0	168	139	1.5192716	0.08153188	1.5192716	308.36804	0	16.548615						575	13	4	NaN	NaN	NaN	0.014046	1	9454	9454		80.639	30.806	1	79082			1454	847	842	860	1137	1137					-0.03605584936747164
AYTDCIPQL	9	Unmodified	_AYTDCIPQL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.4815587871	1	1023.48156	1022.47428	1.4518	0.0014859	3.3993	0.0034792	4.8512	0.0049651	1023.4844935677015	27.856	0.43439	27.846	27.581	28.015	-0.009552	168	136	1.5192716	0.07973838	1.5177522	308.36804	0	16.1846						542	19	2	NaN	NaN	NaN	0.10956	1	9262	9262		34.439	9.8768	1	91519			1455	847	842	860	1138	1138					-0.03605584936747164
AYTLIAPNI	9	Unmodified	_AYTLIAPNI_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000542706.5_1_13:43543884-43565242:-|nuORF;ENST00000536042.1_1_13:43543884-43566301:-|nuORF;ENST00000540470.5_1_13:43544616-43566301:-|nuORF	ENSG00000133106|ENST00000313624|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.5509589812999	1	975.550959	974.543683	2.0252	0.0019757	-0.21667	-0.00021137	1.8085	0.0017643	975.551336946366	28.17	0.096527	28.17	28.098	28.194	0	186	148	1.5086359	0.08701074	1.5086359	306.40967	0	17.67221						180	5	2	NaN	NaN	NaN	0.026295	1	7744	7744		63.958	29.519	1	17305			1456	2812	843	861	1139	1139					0.05539242074314643
AYTLIAPNI	9	Unmodified	_AYTLIAPNI_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000542706.5_1_13:43543884-43565242:-|nuORF;ENST00000536042.1_1_13:43543884-43566301:-|nuORF;ENST00000540470.5_1_13:43544616-43566301:-|nuORF	ENSG00000133106|ENST00000313624|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5509589812999	1	975.550959	974.543683	1.3303	0.0012978	-1.2891	-0.0012576	0.041207	4.02E-05	975.5498802344965	28.17	0.072422	28.161	28.137	28.209	-0.0089779	183	151	1.510409	0.088781714	1.5088896	306.76978	0	18.031921						191	4	2	NaN	NaN	NaN	0.39244	1	7585	7585		14.042	0.30454	1	17191			1457	2812	843	861	1140	1140					0.05539242074314643
AYTLLLHTW	9	Unmodified	_AYTLLLHTW_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.30566682545	2	559.305667	1116.59678	1.7606	0.0009847	-1.6087	-0.00089977	0.15185	8.4931E-05	559.3050461344359	27.591	0.36196	27.591	27.471	27.833	0	1182	94	0.9093879	0.056996763	0.9093879	368.74026	0	23.111176						531	16	4	NaN	NaN	NaN	0.00010594	1	13544	13544		122.55	72.235	1	206460			1458	2879;7410	844	862	1141	1141					0.04314619856972968
AYTLLLHTW	9	Unmodified	_AYTLLLHTW_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.30566682545	2	559.305667	1116.59678	1.4495	0.00081071	-1.4672	-0.00082064	-0.017762	-9.9346E-06	559.3047633854685	27.615	0.28958	27.605	27.508	27.798	-0.009552	1179	103	0.9112251	0.06252271	0.90970564	369.48523	0	25.351837						732	13	5	NaN	NaN	NaN	6.0019E-18	1	13148	13148		158.52	108.69	1	235520			1459	2879;7410	844	862	1142	1142					0.04314619856972968
AYTNVLYAL	9	Unmodified	_AYTNVLYAL_					0	0	0			REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.5458736034	1	1027.54587	1026.5386	1.9302	0.0019834	-0.53046	-0.00054508	1.3997	0.0014383	1027.5453007396627	27.398	0.14484	27.398	27.35	27.495	0	96	166	1.5617468	0.09736514	1.5617468	316.9726	0	19.761261						453	7	4	NaN	NaN	NaN	0.013281	1	9631	9631		82.96	12.36	1	103840	+		1460	9068	845	863	1143	1143					0.026389382117031346
AYTNVLYAL	9	Unmodified						0	0	0			REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1027.54587	1026.5386	1.9302	0.0019834	-0.53046	-0.00054508	1.3997	0.0014383	1027.5453007396627	27.398	0.14484	27.398	27.35	27.495	0	96	166	1.5617468	0.09736514	1.5617468	316.9726		19.761261	0.0054565	-0.00072208	-0.00012401	NaN	82.96	453	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103840	+		1461	9068	845	863							0.026389382117031346
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.77145986734996	2	509.77146	1017.52837	2.2442	0.001144	-0.50776	-0.00025884	1.7365	0.00088521	509.7709937774345	23.899	0.21705	23.899	23.851	24.068	0	1281	76	0.84864825	0.046094477	0.84864825	344.51968	0	18.712646						449	10	5	NaN	NaN	NaN	0.011687	1	9276	9276		87.795	35.036	1	390220			1462	3167	846	864	1144	1144					0.0203037527712695
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.77145986734996	2	509.77146	1017.52837	1.8516	0.00094389	-1.1966	-0.00060998	0.65501	0.00033391	509.7706897147086	23.947	0.26535	23.934	23.861	24.127	-0.013048	1281	73	0.84864825	0.04425788	0.8471288	344.51968	0	17.967072						588	12	4	NaN	NaN	NaN	0.013314	1	9098	9098		82.858	38.556	1	386550			1463	3167	846	864	1145	1145					0.0203037527712695
AYTRAVMHF	9	Unmodified	_AYTRAVMHF_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2738437683	2	548.273844	1094.53313	1.5897	0.0008716	-1.2198	-0.00066878	0.36991	0.00020281	548.2740161796626	17.261	0.095835	17.261	17.237	17.333	0	1209	40	0.892844	0.023909628	0.892844	362.121	0	9.697296						116	5	3	NaN	NaN	NaN	0.51576	1	12605	12605		8.962	3.0422	1	10597			1464	4973	847	865	1146	1146					-0.010350638517593325
AYTTLLNQL	9	Unmodified	_AYTTLLNQL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7873068968	2	518.787307	1035.56006	1.7	0.00088192	-4.6986	-0.0024376	-2.9986	-0.0015557	518.7852646644001	28.532	0.096548	28.532	28.508	28.605	0	1239	82	0.87444305	0.049744427	0.87444305	354.90894	0	20.189697						128	5	3	NaN	NaN	NaN	0.47587	1	10020	10020		10.605	0	1	18671			1465	3097	848	866	1147	1147					0.04370323240414109
AYTTLLNQL	9	Unmodified	_AYTTLLNQL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.567337327	1	1036.56734	1035.56006	1.633	0.0016927	-0.33141	-0.00034353	1.3016	0.0013492	1036.5673812896632	28.532	0.072409	28.532	28.508	28.581	0	75	46	1.5741152	0.026492357	1.5741152	319.44598	0	5.376251						82	4	2	NaN	NaN	NaN	0.055351	1	10022	10022		44.638	14.028	1	8757.2			1466	3097	848	866	1148	1148					0.04370323240414109
AYTTLLNQL	9	Unmodified	_AYTTLLNQL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.567337327	1	1036.56734	1035.56006	1.3329	0.0013816	-1.1098	-0.0011504	0.22313	0.00023128	1036.5665208867554	28.532	0.072384	28.523	28.499	28.572	-0.0083485	69	64	1.5776473	0.037093043	1.5761279	320.16278	0	7.5275574						75	4	2	NaN	NaN	NaN	0.032826	1	9813	9813		55.413	20.974	1	6616.5			1467	3097	848	866	1149	1149					0.04370323240414109
AYTTVLQEW	9	Unmodified	_AYTTVLQEW_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1110.5466018849	1	1110.5466	1109.53933	2.082	0.0023122	-0.71173	-0.0007904	1.3703	0.0015218	1110.5458868079184	28.194	0.21717	28.194	28.146	28.363	0	87	67	1.5670487	0.038877964	1.5670487	317.7331	0	7.8828735						276	10	3	NaN	NaN	NaN	0.015447	1	13252	13252		77.761	36.804	1	33869			1468	5691	849	867	1150	1150					-0.01106267139243755
AYTTVLQEW	9	Unmodified	_AYTTVLQEW_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.5466018849	1	1110.5466	1109.53933	0.87193	0.00096831	0.7457	0.00082814	1.6176	0.0017965	1110.5472449759297	28.194	0.14482	28.185	28.161	28.305	-0.0089779	87	67	1.5670487	0.03886974	1.5655292	317.7331	0	7.881195						244	7	3	NaN	NaN	NaN	1.7723E-07	1	12882	12882		134.97	80.696	1	29383			1469	5691	849	867	1151	1151					-0.01106267139243755
AYVDKLEEL	9	Unmodified	_AYVDKLEEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2845970323501	2	540.284597	1078.55464	1.1563	0.00062475	-2.0316	-0.0010976	-0.87526	-0.00047289	540.2833801181207	22.38	0.12023	22.366	22.318	22.438	-0.013733	1251	58	0.8670771	0.03499776	0.8655577	351.7352	0	14.197052						190	6	3	NaN	NaN	NaN	0.11656	1	11611	11611		33.425	12.473	1	43443			1470	2268	850	868	1152	1152					0.01850599657973362
AYVDKLEEL	9	Unmodified						0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.284597	1078.55464	1.8379	0.00099301	-0.63773	-0.00034456	1.2002	0.00064846	540.2839840067104	22.597	0.072405	22.597	22.573	22.645	0	1278	43	0.85049206	0.025803149	0.85049206	345.0074		10.467194	0.11556	0.0012286	-0.0075328	NaN	33.425	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5468.6			1471	2268	850	868							0.01850599657973362
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8107819931	2	539.810782	1077.60701	1.7862	0.00096423	-2.6492	-0.0014301	-0.86299	-0.00046585	539.8095889926196	15.774	0.11998	15.774	15.774	15.894	0	1254	70	0.8652351	0.042342782	0.8652351	350.99188	0	17.176788						233	6	3	NaN	NaN	NaN	0.034172	1	11872	11872		53.652	13.498	1	31072			1472	4444	851	869	1153	1153					0.0713118279156788
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.5449961544	3	369.544996	1105.61316	1.723	0.00063674	-2.3676	-0.00087494	-0.64458	-0.0002382	369.5439684429221	15.966	0.14396	15.966	15.942	16.086	0	1491	43	0.7190863	0.026013732	0.7190863	437.41275	0	15.823853						196	7	4	NaN	NaN	NaN	0.048656	1	13098	13098		55.958	23.18	1	35167			1473	1936	852	870	1154	1154					0.06457701023077789
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.5449961544	3	369.544996	1105.61316	2.2819	0.00084325	-3.3366	-0.001233	-1.0547	-0.00038975	369.54401063496636	16.035	0.14379	16.023	15.975	16.118	-0.012611	1491	46	0.7190863	0.027864277	0.71756685	437.41275	0	16.949524						223	7	4	NaN	NaN	NaN	0.032826	1	12737	12737		41.839	3.7077	1	40990			1474	1936	852	870	1155	1155					0.06457701023077789
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8138559983	2	553.813856	1105.61316	2.0502	0.0011354	-1.7363	-0.00096159	0.31392	0.00017385	553.8128947384142	16.059	0.1918	16.047	15.975	16.166	-0.012611	1227	49	0.88180584	0.029447913	0.8802864	357.59958	0	11.942017						228	9	3	NaN	NaN	NaN	0.097143	1	12738	12738		36.235	2.8095	1	45720			1475	1936	852	870	1156	1156					0.06457701023077789
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.8660696754667	3	360.86607	1079.57638	1.8659	0.00067335	-2.453	-0.00088521	-0.58709	-0.00021186	360.86576390925995	19.036	0.023996	19.036	19.036	19.06	0	1455	31	0.7413668	0.018555045	0.7413668	451.0994	0	11.290161						41	2	2	NaN	NaN	NaN	0.39983	1	11970	11970		8.2448	1.2605	1	5011.6			1476	1324	853	871	1157	1157					0.03977449197191163
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7954662799001	2	540.795466	1079.57638	1.8196	0.00098402	-2.0359	-0.001101	-0.21635	-0.000117	540.794306356971	19.036	0.071888	19.036	19.012	19.084	0	1173	37	0.91489893	0.022040606	0.91489893	371.12997	0	8.940796						123	4	4	NaN	NaN	NaN	0.020004	1	11971	11971		71.993	33.075	1	19939			1477	1324	853	871	1158	1158					0.03977449197191163
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7954662799001	2	540.795466	1079.57638	1.4692	0.00079454	-1.5134	-0.00081843	-0.044174	-2.3889E-05	540.7953501437677	19.154	0.096178	19.14	19.092	19.188	-0.014141	1173	34	0.91489893	0.020202816	0.9133795	371.12997	0	8.195282						131	5	3	NaN	NaN	NaN	0.049033	1	11661	11661		47.321	18.655	1	20491			1478	1324	853	871	1159	1159					0.03977449197191163
AYVELVHHI	9	Unmodified						0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	360.86607	1079.57638	2.3922	0.00086326	-1.1416	-0.00041196	1.2506	0.0004513	360.86517066780715	19.13	0.072111	19.116	19.092	19.164	-0.014141	1458	31	0.7395112	0.018557012	0.73799175	449.9703		11.291382	0.039784	0.00093423	-0.0016875	NaN	8.2448	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3915.5			1479	1324	853	871							0.03977449197191163
AYVEWFNRL	9	Unmodified	_AYVEWFNRL_					0	0	0		RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3061981417001	2	599.306198	1196.59784	1.2845	0.0007698	-1.4837	-0.00088916	-0.19917	-0.00011936	599.3055225756073	27.229	0.26547	27.229	27.181	27.446	0	1158	64	0.92408	0.038556516	0.92408	374.39206	0	15.621246						370	12	5	NaN	NaN	NaN	0.016254	1	16358	16358		76.739	28.737	1	99742			1480	3178	854	872	1160	1160					0.0074083422589410475
AYVEWFNRL	9	Unmodified	_AYVEWFNRL_					0	0	0		RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant;nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	RASGEF1B|p.Y267C|1|0.17|ENSG00000138670|chr4:81445768-81445768|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.3061981417001	2	599.306198	1196.59784	0.84726	0.00050777	-0.44507	-0.00026673	0.40219	0.00024104	599.3065065427112	27.277	0.19305	27.267	27.194	27.387	-0.010126	1158	64	0.92408	0.038556516	0.9225606	374.39206	0	15.621216						311	9	5	NaN	NaN	NaN	0.042816	1	15716	15716		49.961	25.561	1	83705			1481	3178	854	872	1161	1161					0.0074083422589410475
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.5094880971	1	979.509488	978.502212	2.0488	0.0020068	-1.028	-0.001007	1.0207	0.00099981	979.508462589788	25.153	0.21717	25.153	25.105	25.322	0	240	79	1.4766881	0.046210527	1.4766881	299.90402	0	9.38501						284	10	3	NaN	NaN	NaN	5.7913E-18	1	7843	7843		158.81	67.244	1	51099			1482	694	855	873	1162	1162					0.012100613149868877
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.5094880971	1	979.509488	978.502212	2.0057	0.0019646	-1.6437	-0.0016101	0.36197	0.00035455	979.5079220238827	25.153	0.19297	25.141	25.093	25.286	-0.012011	240	79	1.4766881	0.046200752	1.4751687	299.90402	0	9.383026						263	9	3	NaN	NaN	NaN	0.013281	1	7681	7681		82.96	40.643	1	48133			1483	694	855	873	1163	1163					0.012100613149868877
AYVGDVPI	8	Unmodified	_AYVGDVPI_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4403458994001	1	833.440346	832.433069	1.805	0.0015043	0.2876	0.0002397	2.0926	0.001744	833.4426309287937	29.667	0.072411	29.667	29.642	29.715	0	471	49	1.3393306	0.028656006	1.3393306	272.66968	0	5.8339844						75	4	2	NaN	NaN	NaN	0.69631	1	5168	5168		19.285	1.5044	1	4501.3			1484	3231	856	874	1164	1164					0.01015022086096451
AYVGDVPIL	9	Unmodified	_AYVGDVPIL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5244098798001	1	946.52441	945.517133	1.7107	0.0016192	-0.95571	-0.0009046	0.75499	0.00071462	946.5232957534655	29.715	0.12066	29.715	29.667	29.787	0	297	97	1.4428991	0.05697739	1.4428991	293.1837	0	11.5772705						262	6	3	NaN	NaN	NaN	0.0088919	1	6968	6968		94.648	26.539	1	47104			1485	3231	857	875	1165	1165					0.04219553183008884
AYVGDVPIL	9	Unmodified	_AYVGDVPIL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5244098798001	1	946.52441	945.517133	1.216	0.0011509	-0.35705	-0.00033796	0.85892	0.00081299	946.5235557778423	29.714	0.12061	29.707	29.659	29.779	-0.0070648	297	91	1.4428991	0.053399324	1.4413797	293.1837	0	10.85022						309	6	4	NaN	NaN	NaN	0.078597	1	6836	6836		38.918	4.4791	1	55181			1486	3231	857	875	1166	1166					0.04219553183008884
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.76839424965	2	552.768394	1103.52224	2.3495	0.0012987	-2.4408	-0.0013492	-0.091288	-5.0461E-05	552.7667966480448	18.94	0.67193	18.94	18.772	19.444	0	1191	262	0.90387505	0.16040969	0.90387505	366.55786	0	65.05258						1763	29	7	NaN	NaN	NaN	2.0426E-12	1	12979	12979		152.13	110.34	1	1691100			1487	3230	858	876	1167	1167					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.84802165529993	3	368.848022	1103.52224	1.7739	0.00065429	-1.2996	-0.00047934	0.4743	0.00017494	368.84774152935216	19.756	0.072033	19.756	19.708	19.78	0	1404	34	0.77288127	0.02037406	0.77288127	470.1466	0	12.393585						96	4	3	NaN	NaN	NaN	0.56671	1	12980	12980		3.9281	1.3287	1	8290			1488	3230	858	876	1168	1168					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.84802165529993	3	368.848022	1103.52224	1.8884	0.00069653	-0.67585	-0.00024929	1.2126	0.00044725	368.84762699748234	19.852	0.024033	19.852	19.828	19.852	0	1404	37	0.77288127	0.022225022	0.77288127	470.1466	0	13.519531						41	2	2	NaN	NaN	NaN	0.36492	1	12982	12982		9.6116	6.6416	1	4577.3			1489	3230	858	876	1169	1169					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.84802165529993	3	368.848022	1103.52224	2.6919	0.00099289	-1.3704	-0.00050548	1.3214	0.00048741	368.8474537520379	18.94	0.47991	18.94	18.82	19.3	0	1401	241	0.77473325	0.14805496	0.77473325	471.27316	0	90.06238						1296	21	6	NaN	NaN	NaN	0.12945	1	12983	12983		21.771	10.601	1	2047500			1490	3230	858	876	1170	1170					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.76839424965	2	552.768394	1103.52224	2.5441	0.0014063	-2.047	-0.0011315	0.49711	0.00027479	552.7671868041981	19.058	0.4085	19.044	18.924	19.332	-0.014059	1191	259	0.90387505	0.1585744	0.9023556	366.55786	0	64.30832						2057	18	6	NaN	NaN	NaN	1.433E-07	1	12637	12637		136.23	93.914	1	1857500			1491	3230	858	876	1171	1171					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	368.84802165529993	3	368.848022	1103.52224	2.8499	0.0010512	-0.69962	-0.00025805	2.1503	0.00079312	368.8478214305541	19.058	0.43255	19.044	18.852	19.284	-0.014059	1401	235	0.77473325	0.14435351	0.7732138	471.27316	0	87.81082						1244	19	5	NaN	NaN	NaN	0.078597	1	12638	12638		27.296	17.053	1	2168200			1492	3230	858	876	1172	1172					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.76839424965	2	552.768394	1103.52224	1.4452	0.00079886	6.6819	0.0036935	8.1271	0.0044924	553.2708058323254	19.731	0.14434	19.717	19.645	19.789	-0.014141	1197	46	0.9001988	0.027576089	0.8986794	365.067	0	11.183228						110	7	2	NaN	NaN	NaN	0.024986	1	12639	12639		65.672	38.376	1	14739			1493	3230	858	876	1173	1173					-0.025384662260421464
AYVHMVTHF	9	Unmodified						0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.768394	1103.52224	1.4602	0.00080716	4.4848	0.0024791	5.945	0.0032862	552.7727364731155	19.708	0.1201	19.708	19.684	19.804	0	1194	49	0.902037	0.029416084	0.902037	365.81244		11.929413	-0.0044314	-0.0011466	0.0016788	NaN	65.672	141	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15370			1494	3230	858	876							-0.025384662260421464
AYVHMVTHF	9	Unmodified						0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	368.848022	1103.52224	1.905	0.00070264	-2.2578	-0.00083279	-0.35286	-0.00013015	368.8467945250989	19.539	0.048176	19.524	19.476	19.524	-0.014143	1407	40	0.77102906	0.024080992	0.7695096	469.01993		14.64856	-0.11585	-0.0006266	-0.0016858	NaN	3.9281	63	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7175.1			1495	3230	858	876							-0.025384662260421464
AYVHMVTHF	9	Unmodified						0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	368.848022	1103.52224	1.8433	0.0006799	-1.6434	-0.00060617	0.1999	7.3732E-05	369.1824460222024	19.755	0.12033	19.741	19.693	19.813	-0.014141	1407	31	0.77102906	0.018520832	0.7695096	469.01993		11.266296	-0.055581	-0.0004394	-0.0016858	NaN	9.6116	97	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8157.8			1496	3230	858	876							-0.025384662260421464
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(66)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.7658515607	2	560.765852	1119.51715	2.3957	0.0013434	-1.0464	-0.00058679	1.3493	0.00075664	560.765559676234	15.63	0.40788	15.63	15.606	16.014	0	1221	235	0.885486	0.14376092	0.885486	359.03708	0	58.29059						1272	18	6	NaN	NaN	NaN	0.024986	1	13643	13643		65.672	49.85	1	1156200			1497	3230	858	877	1174	1174		358			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(120)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.7658515607	2	560.765852	1119.51715	2.2222	0.0012462	-0.68267	-0.00038282	1.5396	0.00086334	560.7655160290496	15.558	0.048009	15.558	15.51	15.558	0	1218	133	0.8873258	0.08102554	0.8873258	359.78305	0	32.853363						315	3	6	NaN	NaN	NaN	0.00011853	1	13644	13644		121.78	82.864	1	543270			1498	3230	858	877	1175	1175		358			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(110)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7658515607	2	560.765852	1119.51715	2.9028	0.0016278	-1.2351	-0.00069259	1.6677	0.00093521	560.765715797923	15.724	0.43126	15.711	15.543	15.975	-0.012611	1218	172	0.8873258	0.104925334	0.8858064	359.78305	0	42.543976						1313	19	4	NaN	NaN	NaN	0.002833	1	13242	13242		108.51	76.057	1	1799200			1499	3230	858	877	1176	1176		358			-0.03782770088673715
AYVKGGLSTF	10	Unmodified	_AYVKGGLSTF_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.78202455365	2	521.782025	1041.5495	1.745	0.00091051	-2.2668	-0.0011828	-0.52183	-0.00027228	521.7809447525004	19.756	0.21618	19.756	19.684	19.9	0	1251	67	0.8670771	0.040539026	0.8670771	351.89276	0	16.45227						200	10	3	NaN	NaN	NaN	0.31689	1	10280	10280		27.046	11.871	1	25116			1500	1882	859	878	1177	1177					0.030383405859765844
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.82148406515	2	547.821484	1093.62842	2.004	0.0010978	0.37216	0.00020388	2.3761	0.0013017	547.8219166848822	28.122	0.24134	28.122	28.074	28.315	0	1191	115	0.90387505	0.06986326	0.90387505	366.59875	0	28.33554						484	11	5	NaN	NaN	NaN	3.1345E-12	1	12580	12580		151.07	106.77	1	311820			1501	3399	860	879	1178	1178					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.82148406515	2	547.821484	1093.62842	1.5491	0.00084863	-0.57247	-0.00031361	0.97663	0.00053502	547.8212917619421	28.145	0.24134	28.137	28.088	28.33	-0.0089798	1191	124	0.90387505	0.075391054	0.9023556	366.59875	0	30.577515						460	11	4	NaN	NaN	NaN	0.00010594	1	12252	12252		122.55	85.963	1	311590			1502	3399	860	879	1179	1179					0.08534612610924341
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.75835249209996	2	487.758352	973.502152	2.1172	0.0010327	-2.8138	-0.0013724	-0.69656	-0.00033975	487.756520782378	23.417	0.14475	23.417	23.393	23.538	0	1287	82	0.8449601	0.049825132	0.8449601	343.22937	0	20.23938						321	7	4	NaN	NaN	NaN	0.16059	1	7703	7703		27.861	1.1291	1	56718			1503	1654	861	880	1180	1180					0.01434106105648425
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.75835249209996	2	487.758352	973.502152	1.8595	0.000907	-3.0033	-0.0014649	-1.1438	-0.00055789	487.75681926228907	23.465	0.14478	23.451	23.403	23.548	-0.013294	1308	85	0.83204526	0.051673353	0.8305259	337.98328	0	20.990112						352	7	4	NaN	NaN	NaN	0.10053	1	7554	7554		35.745	10.784	1	56469			1504	1654	861	880	1181	1181					0.01434106105648425
AYVRQFQVI	9	Unmodified	_AYVRQFQVI_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.31656586275	2	562.316566	1122.61858	1.8009	0.0010126	-3.6797	-0.0020691	-1.8788	-0.0010565	562.313617485216	22.332	0.12057	22.332	22.308	22.429	0	1191	49	0.90387505	0.029409707	0.90387505	366.48096	0	11.924316						129	6	3	NaN	NaN	NaN	0.39244	1	13800	13800		14.042	1.4537	1	11516			1505	1674	862	881	1182	1182					0.06217424605551969
AYVRQFQVI	9	Unmodified						0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.316566	1122.61858	1.2508	0.00070337	2.4405	0.0013723	3.6913	0.0020757	562.3157318910935	22.38	0.096174	22.366	22.318	22.414	-0.013733	1188	43	0.90571284	0.02573073	0.9041934	367.22607		10.432648	0.016973	0.0041706	0.00015919	NaN	14.042	133	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12630			1506	1674	862	881							0.06217424605551969
AYVVFVSTL	9	Unmodified	_AYVVFVSTL_					0	0	0		ENST00000549185.5_3_14:31803609-31872202:-|nuORF;nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;HEATR5A|p.L808Ifs*29|1|0.47|ENSG00000129493|chr14:31350708-31350709|-/A|frameshift_variant	ENST00000549185.5_3_14:31803609-31872202:-|nuORF	ENST00000549185.5_3_14:31803609-31872202:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5557100082002	1	998.55571	997.548434	1.3175	0.0013155	-0.42253	-0.00042192	0.89493	0.00089363	998.5551767694182	30.897	0.12065	30.897	30.873	30.994	0	177	73	1.5139546	0.042511344	1.5139546	307.39102	0	8.631409						170	6	3	NaN	NaN	NaN	0.098515	1	8490	8490		36.036	13.91	1	33468			1507	2605	863	882	1183	1183					0.04956126217109613
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5713600724001	1	1012.57136	1011.56408	1.553	0.0015725	-1.3591	-0.0013762	0.19394	0.00019637	1012.5695527367678	32.539	0.12062	32.539	32.49	32.611	0	129	61	1.5422925	0.0353961	1.5422925	313.08554	0	7.1853943						119	6	2	NaN	NaN	NaN	0.19345	1	9058	9058		25.752	6.6335	1	8323.2			1508	382	864	883	1184	1184					0.058764127341419226
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5713600724001	1	1012.57136	1011.56408	1.7786	0.0018009	0.55395	0.00056092	2.3325	0.0023619	1012.5721947335388	31.79	0.21722	31.79	31.742	31.959	0	129	172	1.5422925	0.10101271	1.5422925	313.08554	0	20.505615						837	10	5	NaN	NaN	NaN	0.042649	1	9060	9060		50.033	15.594	1	390050			1509	382	864	883	1185	1185					0.058764127341419226
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.3051355092001	2	513.305136	1024.59572	2.0051	0.0010292	-1.1397	-0.000585	0.86546	0.00044425	513.3045001120978	26.625	0.14483	26.625	26.577	26.722	0	1296	76	0.8394264	0.046094477	0.8394264	340.74457	0	18.710907						289	7	4	NaN	NaN	NaN	0.02857	1	9574	9574		60.982	30.371	1	46250			1510	2469	865	884	1186	1186					0.08440405488090619
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.A1089P|1|0.12|ENSG00000125730|chr19:6693049-6693049|C/G|missense_variant;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.3051355092001	2	513.305136	1024.59572	0.96366	0.00049465	-0.40184	-0.00020627	0.56182	0.00028839	513.3046782765157	26.649	0.12066	26.639	26.59	26.711	-0.010645	1293	76	0.84127116	0.04608953	0.8397517	341.4934	0	18.708923						269	6	3	NaN	NaN	NaN	0.042816	1	9388	9388		49.961	22.172	1	43014			1511	2469	865	884	1187	1187					0.08440405488090619
AYYEFKKQFF	10	Unmodified	_AYYEFKKQFF_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.5641677806999	3	457.564168	1369.67067	1.1842	0.00054185	-1.5752	-0.00072075	-0.391	-0.00017891	457.8966555234575	21.994	0.096344	21.994	21.97	22.067	0	1386	37	0.78399014	0.02220571	0.78399014	475.76126	0	13.475464						97	5	3	NaN	NaN	NaN	0.64871	1	19794	19794		11.561	8.2569	1	7478.8			1512	648	866	885	1188	1188					0.0006254322863696871
AYYEFKKQFF	10	Unmodified	_AYYEFKKQFF_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.84261343775	2	685.842613	1369.67067	2.1519	0.0014759	-1.8538	-0.0012714	0.29816	0.00020449	685.8409640476951	21.994	0.048151	21.994	21.97	22.019	0	993	31	1.0247463	0.018248796	1.0247463	414.57852	0	7.3828735						44	3	2	NaN	NaN	NaN	0.61836	1	19795	19795		21.771	10.032	1	4084.8			1513	648	866	885	1189	1189					0.0006254322863696871
AYYGNINFF	9	Unmodified	_AYYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-2|POLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.75854945735	2	554.758549	1107.50255	1.0111	0.00056093	0.59497	0.00033006	1.6061	0.000891	554.758733170663	30.487	0.26546	30.487	30.415	30.68	0	1224	43	0.883646	0.025764108	0.883646	358.3383	0	10.4479065						213	12	3	NaN	NaN	NaN	0.3389	1	13160	13160		16.417	8.1718	1	23047			1514	1251	867	886	1190	1190					-0.04690518965162482
AYYGNINFF	9	Unmodified	_AYYGNINFF_					0	0	0		nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-2|POLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.75854945735	2	554.758549	1107.50255	0.96312	0.0005343	-0.93573	-0.0005191	0.027396	1.5198E-05	554.7594375030816	30.486	0.16891	30.48	30.408	30.577	-0.0057545	1221	58	0.885486	0.034967482	0.88396657	359.08444	0	14.180084						213	8	3	NaN	NaN	NaN	0.056143	1	12791	12791		44.302	26.333	1	26584			1515	1251	867	886	1191	1191					-0.04690518965162482
AYYLTEALY	9	Unmodified	_AYYLTEALY_					0	0	0			REV__ENST00000515717.1_1_4:122590675-122593697:-|nuORF	REV__ENST00000515717.1_1_4:122590675-122593697:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5404538745	1	1106.54045	1105.53318	1.5831	0.0017517	-1.7913	-0.0019822	-0.2083	-0.00023049	1106.5371326634706	28.991	0.12068	28.991	28.967	29.087	0	60	55	1.582944	0.03178227	1.582944	320.9703	0	6.444458						97	6	2	NaN	NaN	NaN	0.20577	1	13077	13077		24.961	0	1	7803.9	+		1516	10320	868	887	1192	1192					-0.015367853707630275
AYYLTEALY	9	Unmodified						0	0	0			REV__ENST00000515717.1_1_4:122590675-122593697:-|nuORF	REV__ENST00000515717.1_1_4:122590675-122593697:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1106.54045	1105.53318	1.5831	0.0017517	-1.7913	-0.0019822	-0.2083	-0.00023049	1106.5371326634706	28.991	0.12068	28.991	28.967	29.087	0	60	55	1.582944	0.03178227	1.582944	320.9703		6.444458	-0.0078386	0.00040776	0.00075972	NaN	24.961	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7803.9	+		1517	10320	868	887							-0.015367853707630275
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.30639510695	2	636.306395	1270.59824	2.0474	0.0013028	-2.0299	-0.0012916	0.017533	1.1157E-05	636.3041484330109	23.296	0.07238	23.296	23.272	23.345	0	1155	91	0.92591566	0.055024385	0.92591566	374.8866	0	22.278381						122	4	2	NaN	NaN	NaN	0.25335	1	18239	18239		27.296	16.936	1	26403			1518	1977	869	888	1193	1193					-0.02623790844904761
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.30639510695	2	636.306395	1270.59824	2.0363	0.0012957	-0.70611	-0.0004493	1.3301	0.00084638	636.3065458536448	23.32	0.16888	23.307	23.258	23.427	-0.013296	1155	103	0.92591566	0.06234753	0.9243962	374.8866	0	25.243408						331	8	4	NaN	NaN	NaN	0.038403	1	17429	17429		52.78	34.981	1	43150			1519	1977	869	888	1194	1194					-0.02623790844904761
AYYTRSVGMT	10	Unmodified	_AYYTRSVGMT_					0	0	0			REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF	REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7738735580501	2	574.773874	1147.53319	1.7349	0.00099716	-4.1674	-0.0023953	-2.4325	-0.0013981	574.7716943521377	20.911	0.43336	20.897	20.704	21.138	-0.014086	1212	115	0.8910048	0.06990099	0.88948536	361.1675	0	28.334259						1529	19	4	NaN	NaN	NaN	0.12158	1	14222	14222		42.995	14.099	1	1336500	+		1520	12752	870	889	1195	1195					-0.03467108642394123
AYYTRSVGMT	10	Unmodified	_AYYTRSVGMT_					0	0	0			REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF	REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7738735580501	2	574.773874	1147.53319	2.394	0.001376	-4.2853	-0.0024631	-1.8913	-0.0010871	574.771420450026	18.41	0.31204	18.396	18.324	18.636	-0.013948	1233	115	0.87812483	0.06989348	0.8766054	355.94662	0	28.331207						1024	14	5	NaN	NaN	NaN	0.34693	1	14224	14224		25.801	2.6834	1	474330	+		1521	12752	870	889	1196	1196					-0.03467108642394123
CAACGKAF	8	Unmodified	_CAACGKAF_					0	0	0		ENSG00000198816|ENST00000597229|ZNF358;ENSG00000196152|ENST00000342483|ZNF79;ENSG00000170631|ENST00000394909|ZNF16	ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.3323921294	1	770.332392	769.325116	1.9928	0.0015351	3.5882	0.0027641	5.5811	0.0042993	770.3351161361381	30.294	0.28956	30.294	30.222	30.511	0	582	118	1.2729256	0.07019651	1.2729256	259.49548	0	14.310074						625	13	4	NaN	NaN	NaN	0.81807	1	4345	4345		6.794	0.54379	1	156580			1522	5813	871	890	1197	1197					-0.06877389040494108
CAAEHPTI	8	Unmodified	_CAAEHPTI_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.197270469	2	421.19727	840.379988	1.8997	0.00080013	3.7119	0.0015635	5.6116	0.0023636	421.1995602799167	37.961	0.12019	37.964	37.916	38.036	0.0034256	1440	22	0.7506418	0.012980759	0.7491224	305.58832	0	5.2845154						57	6	2	NaN	NaN	NaN	0.82332	1	5138	5138		6.0903	2.0366	1	3147.9			1523	2879;7410	872	891	1198	1198					-0.046586789682237395
CAAEHPTI	8	Unmodified						0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	421.19727	840.379988	1.0559	0.00044476	3.9173	0.0016499	4.9732	0.0020947	421.19920829461694	37.578	0.072243	37.578	37.53	37.602	0	1455	31	0.7413668	0.018557012	0.7413668	301.81244		7.5546265	-0.19289	0.00010834	-0.0038778	NaN	6.0903	43	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2391.9			1524	2879;7410	872	891							-0.046586789682237395
CACCVGGC	8	Unmodified	_CACCVGGC_					0	0	0		nc|ENSG00000214946|Q86UD7-3|TBC1D26	nc|ENSG00000214946|Q86UD7-3|TBC1D26	nc|ENSG00000214946|Q86UD7-3|TBC1D26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.10515534095	2	358.105155	714.195758	1.6358	0.00058578	4.8181	0.0017254	6.4538	0.0023111	358.1071325552441	26.529	0.28956	26.518	26.373	26.663	-0.010645	1458	67	0.7395112	0.040825486	0.73799175	301.90936	0	16.667206						366	13	3	NaN	NaN	NaN	0.84651	1	3426	3426		1.6704	0.42852	1	46783			1525	8036	873	892	1199	1199					-0.17277229986439124
CACSCHEG	8	Unmodified	_CACSCHEG_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.12239096639996	2	405.122391	808.230229	1.4312	0.00057982	-10.082	-0.0040843	-8.6504	-0.0035045	405.1181528576453	36.517	0.072395	36.519	36.494	36.567	0.0016785	1464	64	0.73579943	0.038959205	0.73428	299.7372	0	15.870514						106	4	2	NaN	NaN	NaN	0.84887	1	4762	4762		0.32989	0	1	8407.5			1526	2089	874	893	1200	1200					-0.1815569057398534
CAGACGTS	8	Unmodified	_CAGACGTS_					0	0	0		ENST00000470582.1_1_2:96799698-96803509:-|nuORF;ENSG00000188886|ENST00000342380|ASTL	ENST00000470582.1_1_2:96799698-96803509:-|nuORF	ENST00000470582.1_1_2:96799698-96803509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.2330720153	1	669.233072	668.225796	1.8145	0.0012143	-3.6823	-0.0024643	-1.8678	-0.00125	669.2308585482573	26.263	0.26541	26.252	26.083	26.349	-0.011137	780	94	1.1538198	0.056108475	1.1523004	235.8375	0	11.46843						326	12	2	NaN	NaN	NaN	0.84876	1	2446	2446		0.39566	0	1	28648			1527	5570	875	894	1201	1201					-0.12158831725241726
CAGAPGLL	8	Unmodified	_CAGAPGLL_					0	0	0		ENST00000427865.2_1_5:180220053-180230689:-|nuORF	ENST00000427865.2_1_5:180220053-180230689:-|nuORF	ENST00000427865.2_1_5:180220053-180230689:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3650724662999	1	701.365072	700.357796	1.313	0.00092088	-5.3129	-0.0037263	-3.9999	-0.0028054	701.3607201695474	22.694	0.19294	22.694	22.645	22.838	0	645	46	1.2351195	0.027033329	1.2351195	252.22249	0	5.5204315						128	9	2	NaN	NaN	NaN	0.83849	1	3226	3226		4.0537	0	1	13324			1528	6957	876	895	1202	1202					-0.004368586459918333
CAGLVALV	8	Unmodified	_CAGLVALV_					0	0	0			REV__ENSG00000170537|ENST00000304381|TMC7	REV__ENSG00000170537|ENST00000304381|TMC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.4276727230999	1	745.427673	744.420396	1.3085	0.00097543	-10.623	-0.0079186	-9.3144	-0.0069432	745.4187261551089	29.232	0.072411	29.232	29.184	29.256	0	630	40	1.2441287	0.023418784	1.2441287	253.7737	0	4.7769012						76	4	2	NaN	NaN	NaN	0.84876	1	3976	3976		0.39566	0	1	7432.2	+		1529	10590	877	896	1203	1203					0.03796287422187561
CAGLVALV	8	Unmodified						0	0	0			REV__ENSG00000170537|ENST00000304381|TMC7	REV__ENSG00000170537|ENST00000304381|TMC7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.427673	744.420396	1.3085	0.00097543	-10.623	-0.0079186	-9.3144	-0.0069432	745.4187261551089	29.232	0.072411	29.232	29.184	29.256	0	630	40	1.2441287	0.023418784	1.2441287	253.7737		4.7769012	0.0042402	0.00052749	0.00075972	NaN	0.39566	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7432.2	+		1530	10590	877	896							0.03796287422187561
CAGLVALV	8	Unmodified						0	0	0			REV__ENSG00000170537|ENST00000304381|TMC7	REV__ENSG00000170537|ENST00000304381|TMC7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	745.427673	744.420396	1.374	0.0010242	-11.836	-0.008823	-10.462	-0.0077988	745.4188497992386	29.231	0.072378	29.224	29.2	29.272	-0.0077209	630	46	1.2441287	0.027018785	1.2426093	253.77371		5.511215	-0.0042402	-0.00037688	-0.00075972	NaN	0.39566	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11533	+		1531	10590	877	896							0.03796287422187561
CAGWRRPSAGW	11	Unmodified	_CAGWRRPSAGW_					0	0	0		ENST00000361170.6_1_1:156536318-156539228:-|nuORF	ENST00000361170.6_1_1:156536318-156539228:-|nuORF	ENST00000361170.6_1_1:156536318-156539228:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.7985486726001	2	623.798549	1245.58254	1.1151	0.00069557	-6.5081	-0.0040597	-5.393	-0.0033642	623.7951689743272	23.079	0.12047	23.065	22.945	23.065	-0.013294	1179	73	0.9112251	0.044076502	0.90970564	369.0183	0	17.84967						200	6	2	NaN	NaN	NaN	0.54514	1	16902	16902		16.858	1.6829	1	33914			1532	6601	878	897	1204	1204					-0.03042355842944744
CALGAKGA	8	Unmodified	_CALGAKGA_					0	0	0			REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.33169	0.00022899	5.1689	0.0035684	5.5006	0.0037974	690.3638955760257	43.607	0.33565	43.618	43.498	43.834	0.010994	723	64	1.1881942	0.03795612	1.1866747	242.71411	0	7.7533417						285	15	2	NaN	NaN	NaN	0.84727	1	2947	2947		1.2418	0	1	30262	+		1533	12174	879	898	1205	1205					-0.004057427887460108
CALGAKGA	8	Unmodified						0	0	0			REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.3303	0.00091836	5.2889	0.0036513	6.6192	0.0045696	690.3637441048651	43.609	0.11998	43.609	43.537	43.657	0	726	64	1.1863867	0.03796017	1.1863867	242.34491		7.754181	-0.0045231	4.1464E-05	-0.000144	NaN	1.2418	183	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15844	+		1534	12174	879	898							-0.004057427887460108
CALGAKGA	8	Unmodified						0	0	0			REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	REV__ENST00000435893.6_1_14:75895226-75904736:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	0.33169	0.00022899	5.1689	0.0035684	5.5006	0.0037974	690.3638955760257	43.607	0.33565	43.618	43.498	43.834	0.010994	723	64	1.1881942	0.03795612	1.1866747	242.71411		7.7533417	0.0045231	-4.1401E-05	0.000144	NaN	1.2418	285	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30262	+		1535	12174	879	898							-0.004057427887460108
CALMVPVS	8	Unmodified	_CALMVPVS_					0	0	0		ENST00000282908.9_1_4:5500837-5501047:+|nuORF	ENST00000282908.9_1_4:5500837-5501047:+|nuORF	ENST00000282908.9_1_4:5500837-5501047:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.4103080994001	1	819.410308	818.403032	1.5762	0.0012916	-9.3801	-0.0076861	-7.8039	-0.0063946	819.4033511594438	32.201	0.14478	32.201	32.177	32.321	0	522	46	1.3088527	0.026915193	1.3088527	266.53903	0	5.481079						168	7	3	NaN	NaN	NaN	0.79379	1	5000	5000		10.052	1.7613	1	12901			1536	6367	880	899	1206	1206					-0.013433761751002748
CALRLLPG	8	Unmodified	_CALRLLPG_					0	0	0			REV__ENSG00000181803|ENST00000320704|OR6S1	REV__ENSG00000181803|ENST00000320704|OR6S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.4916699634002	1	842.49167	841.484393	0.928	0.00078183	5.6892	0.0047931	6.6172	0.005575	842.4964039938014	26.891	0.1207	26.88	26.832	26.952	-0.010643	483	49	1.3321642	0.028671265	1.3306447	271.16333	0	5.8360596						124	6	2	NaN	NaN	NaN	0.84651	1	5154	5154		1.6704	0	1	10045	+		1537	10850	881	900	1207	1207					0.05731067579165483
CANNIVQK	8	Unmodified	_CANNIVQK_					0	0	0			REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.2316446026	2	445.231645	888.448736	0.73424	0.00032691	7.2666	0.0032353	8.0008	0.0035622	445.235427091677	35.554	0.33765	35.554	35.482	35.82	0	1413	73	0.7673241	0.04445964	0.7673241	312.10825	0	18.083923						664	15	4	NaN	NaN	NaN	0.84455	1	5919	5919		2.7852	0.32367	1	160360	+		1538	9226	882	901	1208	1208					4.985331497664447E-05
CAPGSTGA	8	Unmodified	_CAPGSTGA_					0	0	0			REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	332.14196392804996	2	332.141964	662.269375	1.9427	0.00064525	-1.9794	-0.00065745	-0.03673	-1.2199E-05	332.1414085825884	28.219	0.072405	28.219	28.194	28.267	0	1521	46	0.70049703	0.027894557	0.70049703	286.40207	0	11.404846						68	4	2	NaN	NaN	NaN	0.84455	1	2365	2365		2.7852	0	1	5201.9	+		1539	12889	883	902	1209	1209					-0.07526898956461991
CAPGSTGA	8	Unmodified						0	0	0			REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	332.141964	662.269375	1.9427	0.00064525	-1.9794	-0.00065745	-0.03673	-1.2199E-05	332.1414085825884	28.219	0.072405	28.219	28.194	28.267	0	1521	46	0.70049703	0.027894557	0.70049703	286.40207		11.404846	0.0048441	-0.00052733	0.00075972	NaN	2.7852	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5201.9	+		1540	12889	883	902							-0.07526898956461991
CAPGSTGA	8	Unmodified						0	0	0			REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	REV__ENST00000590135.5_1_19:36234629-36235052:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	332.141964	662.269375	1.6753	0.00055642	-0.32539	-0.00010808	1.3499	0.00044835	332.1419469490223	28.218	0.12071	28.209	28.185	28.305	-0.0089779	1521	43	0.70049703	0.026036322	0.6989776	286.40204		10.645081	-0.0048441	0.00057142	-0.00075972	NaN	2.7852	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6466.5	+		1541	12889	883	902							-0.07526898956461991
CARAEKSPQ	9	Unmodified	_CARAEKSPQ_					0	0	0			REV__ENSG00000049283|ENST00000268933|EPN3	REV__ENSG00000049283|ENST00000268933|EPN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2452832941	2	495.245283	988.476014	1.8537	0.00091804	3.9571	0.0019597	5.8108	0.0028778	495.2479557336094	14.093	0.16811	14.093	14.045	14.213	0	1353	37	0.8043377	0.022184074	0.8043377	326.65924	0	9.00946						107	8	2	NaN	NaN	NaN	0.6532	1	8157	8157		3.2116	0.058268	1	11512	+		1542	8488	884	903	1210	1210					-0.018685311281274153
CARAEKSPQ	9	Unmodified						0	0	0			REV__ENSG00000049283|ENST00000268933|EPN3	REV__ENSG00000049283|ENST00000268933|EPN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	495.245283	988.476014	1.8537	0.00091804	3.9571	0.0019597	5.8108	0.0028778	495.2479557336094	14.093	0.16811	14.093	14.045	14.213	0	1353	37	0.8043377	0.022184074	0.8043377	326.65924		9.00946	0.0054402	0.00035853	-0.00016457	NaN	3.2116	107	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11512	+		1543	8488	884	903							-0.018685311281274153
CARAEKSPQ	9	Unmodified						0	0	0			REV__ENSG00000049283|ENST00000268933|EPN3	REV__ENSG00000049283|ENST00000268933|EPN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	495.245283	988.476014	1.0434	0.00051675	3.184	0.0015769	4.2274	0.0020936	495.24662456256925	14.093	0.19175	14.082	14.01	14.202	-0.010672	1350	49	0.80618626	0.029572368	0.8046668	327.41		12.01001	-0.0054402	-0.00040715	0.00016457	NaN	3.2116	120	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10470	+		1544	8488	884	903							-0.018685311281274153
CAVGLGQG	8	Unmodified	_CAVGLGQG_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3395859973001	1	704.339586	703.33231	0.3725	0.00026237	3.5781	0.0025202	3.9506	0.0027826	704.3420187364303	39.02	0.048054	39.02	38.972	39.02	0	714	46	1.1936152	0.027099848	1.1936152	243.72714	0	5.5335846						56	3	2	NaN	NaN	NaN	0.84887	1	3265	3265		0.32989	0	1	3839.8	+		1545	8378	885	904	1211	1211					-0.03122333168403202
CCCCCGRS	8	Unmodified	_CCCCCGRS_					0	0	0			REV__chr19:49044224-49044577|447|28.38|0.84|5.08|+|1|CGB5,CGB5|1	REV__chr19:49044224-49044577|447|28.38|0.84|5.08|+|1|CGB5,CGB5|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	834.2183667035001	1	834.218367	833.21109	1.8344	0.0015303	1.2609	0.0010519	3.0953	0.0025822	834.2199411437254	58.797	0.095951	58.797	58.749	58.845	0	522	91	1.3088527	0.053804398	1.3088527	266.4608	0	10.953705						160	5	2	NaN	NaN	NaN	0.84876	1	5174	5174		0.39566	0	1	11053	+		1546	8220	886	905	1212	1212					-0.21218686460883873
CCCCCGRS	8	Unmodified						0	0	0			REV__chr19:49044224-49044577|447|28.38|0.84|5.08|+|1|CGB5,CGB5|1	REV__chr19:49044224-49044577|447|28.38|0.84|5.08|+|1|CGB5,CGB5|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	834.218367	833.21109	1.8344	0.0015303	1.2609	0.0010519	3.0953	0.0025822	834.2199411437254	58.797	0.095951	58.797	58.749	58.845	0	522	91	1.3088527	0.053804398	1.3088527	266.4608		10.953705	0	0	0	NaN	0.39566	160	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11053	+		1547	8220	886	905							-0.21218686460883873
CCCFWCFAFQ	10	Unmodified	_CCCFWCFAFQ_					0	0	0		ENST00000316660.6_1_18:57570359-57570470:+|nuORF	ENST00000316660.6_1_18:57570359-57570470:+|nuORF	ENST00000316660.6_1_18:57570359-57570470:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.221050766	2	629.221051	1256.42755	1.7751	0.0011169	-3.7182	-0.0023396	-1.9431	-0.0012227	629.2180984407502	16.877	0.095886	16.877	16.854	16.949	0	1152	61	0.92775106	0.036694765	0.92775106	375.6753	0	14.858856						101	5	2	NaN	NaN	NaN	0.77318	1	17912	17912		2.1763	0.2517	1	8268.7			1548	6468	887	906	1213	1213					-0.19040807355554534
CCCFWCFAFQ	10	Unmodified						0	0	0		ENST00000316660.6_1_18:57570359-57570470:+|nuORF	ENST00000316660.6_1_18:57570359-57570470:+|nuORF	ENST00000316660.6_1_18:57570359-57570470:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	629.221051	1256.42755	1.6378	0.0010306	-4.5855	-0.0028853	-2.9477	-0.0018547	629.2180540570428	16.898	0.095911	16.885	16.861	16.957	-0.013294	1152	61	0.92775106	0.036694765	0.9262317	375.6753		14.858856	0.003657	-0.00052233	-0.00075972	NaN	2.1763	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8833.6			1549	6468	887	906							-0.19040807355554534
CCCGLDVPFAS	11	Unmodified	_CCCGLDVPFAS_					0	0	0			REV__ENST00000372025.4_1_1:46153844-46156656:+|nuORF	REV__ENST00000372025.4_1_1:46153844-46156656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7219378355001	2	557.721938	1113.42932	1.3993	0.00078041	-2.069	-0.0011539	-0.66968	-0.0003735	558.2212088779312	24.14	0.14475	24.127	24.079	24.224	-0.012749	1281	43	0.84864825	0.025811553	0.8471288	344.1234	0	10.466461						170	7	3	NaN	NaN	NaN	0.77378	1	13014	13014		1.3312	0.089322	1	15222	+		1550	11907	888	907	1214	1214					-0.12285475065937135
CCEGDVVQ	8	Unmodified	_CCEGDVVQ_					0	0	0		ENSG00000079557|ENST00000226355|AFM;CON__REFSEQ:XP_585019	ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.3226153041	1	852.322615	851.315339	0.0039474	3.3644E-06	-8.7307	-0.0074414	-8.7268	-0.007438	852.3146845993379	44.542	0.24007	44.553	44.457	44.697	0.011646	609	52	1.2567334	0.03060162	1.255214	255.76189	0	6.227844						209	11	2	NaN	NaN	NaN	0.84512	1	5267	5267		2.4615	0.79115	1	22758			1551	896	889	908	1215	1215					-0.11626621836524009
CCGCCRTS	8	Unmodified	_CCGCCRTS_					0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.2568606998001	1	832.256861	831.249584	1.0975	0.00091344	4.6769	0.0038924	5.7744	0.0048058	832.2606223607992	33.19	0.12066	33.19	33.142	33.262	0	519	58	1.310647	0.034099817	1.310647	266.83627	0	6.9424133						123	6	2	NaN	NaN	NaN	0.84876	1	5146	5146		0.39566	0	1	14608	+		1552	8554	890	909	1216	1216					-0.17279057554719657
CCGCCRTS	8	Unmodified						0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.256861	831.249584	1.0975	0.00091344	4.6769	0.0038924	5.7744	0.0048058	832.2606223607992	33.19	0.12066	33.19	33.142	33.262	0	519	58	1.310647	0.034099817	1.310647	266.83627		6.9424133	-0.107	-0.00010465	0.0016569	NaN	0.39566	123	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14608	+		1553	8554	890	909							-0.17279057554719657
CCGCCRTS	8	Unmodified						0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.256861	831.249584	0.78737	0.0006553	5.1016	0.0042458	5.889	0.0049011	832.2608717266509	33.406	0.096512	33.404	33.404	33.501	-0.0018501	522	40	1.3088527	0.023326516	1.3073332	266.47095		4.749054	0.107	0.00024882	-0.0016569	NaN	0.39566	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7080.1	+		1554	8554	890	909							-0.17279057554719657
CCLPSFVI	8	Unmodified	_CCLPSFVI_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.2166173151	2	441.216617	880.418682	1.1419	0.00050384	1.3306	0.00058707	2.4725	0.0010909	441.21736864144225	28.869	0.072416	28.861	28.837	28.909	-0.0083504	1404	40	0.77288127	0.024073124	0.7713618	314.41226	0	9.793091						68	4	3	NaN	NaN	NaN	0.80692	1	5683	5683		8.2903	2.0401	1	5917			1555	2863	891	910	1217	1217					-0.026310896580639564
CCNMGMSDC	9	Unmodified	_CCNMGMSDC_					0	0	0			REV__ENST00000444078.5_1_2:231775762-231789902:-|nuORF	REV__ENST00000444078.5_1_2:231775762-231789902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.2497264114	1	963.249726	962.24245	1.8494	0.0017815	0.71298	0.00068678	2.5624	0.0024683	963.2493809007842	59.492	0.096046	59.492	59.492	59.588	0	321	37	1.4286518	0.021377802	1.4286518	290.21628	0	4.3427124						53	5	2	NaN	NaN	NaN	0.68845	1	7386	7386		0.19249	0.19249	1	2754.2	+		1556	12202	892	911	1218	1218					-0.24018158217461405
CCSNSGFG	8	Unmodified	_CCSNSGFG_					0	0	0			REV__ENSG00000240432|ENST00000390690|KRTAP13-3	REV__ENSG00000240432|ENST00000390690|KRTAP13-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.2545357389001	1	774.254536	773.247259	0.49451	0.00038288	-1.6396	-0.0012694	-1.1451	-0.00088656	774.2538310150618	58.938	0.047947	58.938	58.89	58.938	-0.00045395	579	34	1.2747238	0.019773602	1.2732043	259.839	0	4.0306396						39	3	2	NaN	NaN	NaN	0.84876	1	4326	4326		0.39566	0	1	3342	+		1557	11338	893	912	1219	1219					-0.14843446696511364
CCSNSGFG	8	Unmodified	_CCSNSGFG_					0	0	0			REV__ENSG00000240432|ENST00000390690|KRTAP13-3	REV__ENSG00000240432|ENST00000390690|KRTAP13-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.2545357389001	1	774.254536	773.247259	0.91344	0.00070724	-0.50688	-0.00039245	0.40656	0.00031478	774.2540550232159	57.762	0.024021	57.762	57.738	57.762	-0.00051117	588	34	1.2693287	0.019786358	1.2678093	258.73926	0	4.0332336						38	2	2	NaN	NaN	NaN	0.84876	1	4327	4327		0.39566	0	1	2255	+		1558	11338	893	912	1220	1220					-0.14843446696511364
CCSPCCCT	8	Unmodified	_CCSPCCCT_					0	0	0			REV__ENSG00000198271|ENST00000343246|KRTAP4-5	REV__ENSG00000198271|ENST00000343246|KRTAP4-5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.1962342778999	1	819.196234	818.188958	0.69868	0.00057236	-6.3793	-0.0052259	-5.6806	-0.0046535	819.1917292195049	59.394	0.071892	59.394	59.37	59.442	-0.00045776	507	31	1.3178225	0.017936707	1.316303	268.36682	0	3.65271						43	4	2	NaN	NaN	NaN	0.84887	1	4878	4878		0.32989	0.32989	1	2581.7	+		1559	11172	894	913	1221	1221					-0.22740910929337588
CCSPSCPR	8	Unmodified	_CCSPSCPR_					0	0	0			REV__ENST00000600350.1_1_19:39667133-39669216:+|nuORF	REV__ENST00000600350.1_1_19:39667133-39669216:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.3160901382	1	852.31609	851.308814	1.6867	0.0014376	-3.8835	-0.00331	-2.1968	-0.0018724	852.313034616489	45.694	0.26406	45.694	45.622	45.886	0	600	70	1.2621325	0.041384578	1.2621325	256.8607	0	8.422302						395	12	3	NaN	NaN	NaN	0.84727	1	5401	5401		1.2418	0	1	30225	+		1560	12959	895	914	1222	1222					-0.12278838268889558
CCSSSYGC	8	Unmodified	_CCSSSYGC_					0	0	0			REV__ENSG00000187026|ENST00000333892|KRTAP21-2	REV__ENSG00000187026|ENST00000333892|KRTAP21-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.11677427225	2	405.116774	808.218996	0.98891	0.00040063	3.6552	0.0014808	4.6441	0.0018814	405.11827426498735	35.988	0.096535	35.988	35.988	36.085	0	1443	100	0.7487872	0.061195076	0.7487872	305.02795	0	24.928558						228	5	2	NaN	NaN	NaN	0.84887	1	4855	4855		0.32989	0	1	31679	+		1561	11019	896	915	1223	1223					-0.1927851266812013
CCSVTHPTSDP	11	Unmodified	_CCSVTHPTSDP_					0	0	0			REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.73134842885	2	573.731348	1145.44814	1.2965	0.00074384	-7.0872	-0.0040661	-5.7907	-0.0033223	574.2285754593305	22.717	0.096458	22.704	22.68	22.776	-0.01354	1257	64	0.86339295	0.038702607	0.8618735	349.98264	0	15.688416						124	5	4	NaN	NaN	NaN	0.69801	1	14145	14145		7.5876	2.1217	1	8185.4	+		1562	12297	897	916	1224	1224					-0.11876222170531037
CCSVTHPTSDP	11	Unmodified						0	0	0			REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.731348	1145.44814	1.8255	0.0010473	-8.1016	-0.0046481	-6.2761	-0.0036008	574.227849539769	22.718	0.072392	22.718	22.694	22.766	0	1254	37	0.8652351	0.022104979	0.8652351	350.7294		8.960449	0.0070631	-0.00058671	0.0016808	NaN	7.5876	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6609.1	+		1563	12297	897	916							-0.11876222170531037
CCSVTHPTSDP	11	Unmodified						0	0	0			REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	573.731348	1145.44814	1.2965	0.00074384	-7.0872	-0.0040661	-5.7907	-0.0033223	574.2285754593305	22.717	0.096458	22.704	22.68	22.776	-0.01354	1257	64	0.86339295	0.038702607	0.8618735	349.98264		15.688416	-0.0070631	0.00057723	-0.0016808	NaN	7.5876	124	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8185.4	+		1564	12297	897	916							-0.11876222170531037
CCTSAEAAP	9	Unmodified	_CCTSAEAAP_					0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.3226153040999	1	852.322615	851.315339	1.5455	0.0013173	-11.42	-0.0097339	-9.8749	-0.0084166	852.3142553171735	44.568	0.24023	44.568	44.472	44.712	0	612	52	1.2549332	0.03060162	1.2549332	255.39555	0	6.227829						335	11	3	NaN	NaN	NaN	0.66196	1	5400	5400		2.4615	1.2197	1	28376	+		1565	12344	898	917	1225	1225					-0.11626621836535378
CCTSAEAAP	9	Unmodified						0	0	0			REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	REV__ENST00000474125.6_1_10:102770610-102771988:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	852.322615	851.315339	1.5455	0.0013173	-11.42	-0.0097339	-9.8749	-0.0084166	852.3142553171735	44.568	0.24023	44.568	44.472	44.712	0	612	52	1.2549332	0.03060162	1.2549332	255.39555		6.227829	0.0071038	-0.00095358	-0.00014033	NaN	2.4615	335	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28376	+		1566	12344	898	917							-0.11626621836535378
CCVDNGTM	8	Unmodified	_CCVDNGTM_					0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.2841213078	1	842.284121	841.276845	1.2743	0.0010733	1.6516	0.0013912	2.926	0.0024645	842.2845675484618	31.935	0.07242	31.935	31.911	31.983	0	465	43	1.3429124	0.025071263	1.3429124	273.35223	0	5.103302						55	4	2	NaN	NaN	NaN	0.80071	1	5279	5279		9.1232	2.3292	1	3903.8	+		1567	8144	899	918	1226	1226					-0.15014250742694912
CCVDNGTM	8	Unmodified	_CCVDNGTM_					0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.2841213078	1	842.284121	841.276845	0.96702	0.00081451	5.2496	0.0044217	6.2166	0.0052362	842.2887398207562	31.934	0.072403	31.93	31.906	31.979	-0.0037613	465	37	1.3429124	0.02148974	1.341393	273.35223	0	4.3742676						56	4	2	NaN	NaN	NaN	0.81251	1	5148	5148		7.5404	4.387	1	3836.4	+		1568	8144	899	918	1227	1227					-0.15014250742694912
CCVDNGTM	8	Unmodified						0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	842.284121	841.276845	1.2743	0.0010733	1.6516	0.0013912	2.926	0.0024645	842.2845675484618	31.935	0.07242	31.935	31.911	31.983	0	465	43	1.3429124	0.025071263	1.3429124	273.35223		5.103302	0.0024194	-0.0017624	0.00075972	NaN	9.1232	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3903.8	+		1569	8144	899	918							-0.15014250742694912
CCVDNGTM	8	Unmodified						0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	842.284121	841.276845	0.96702	0.00081451	5.2496	0.0044217	6.2166	0.0052362	842.2887398207562	31.934	0.072403	31.93	31.906	31.979	-0.0037613	465	37	1.3429124	0.02148974	1.341393	273.35223		4.3742676	-0.0024194	0.0012681	-0.00075972	NaN	9.1232	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3836.4	+		1570	8144	899	918							-0.15014250742694912
CCVHLPALFWS	11	Unmodified	_CCVHLPALFWS_					0	0	0		ENST00000533277.5_1_11:66612430-66612655:+|nuORF	ENST00000533277.5_1_11:66612430-66612655:+|nuORF	ENST00000533277.5_1_11:66612430-66612655:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3042866169501	2	638.304287	1274.59402	2.128	0.0013583	-6.3806	-0.0040728	-4.2527	-0.0027145	638.3004522688441	17.741	0.071915	17.741	17.717	17.789	0	1161	46	0.9222442	0.027540386	0.9222442	373.3875	0	11.150238						99	4	3	NaN	NaN	NaN	0.77166	1	18305	18305		1.7022	0.52538	1	7261			1571	7460	900	919	1228	1228					-0.032292948638314556
CDAEPMNE	8	Unmodified	_CDAEPMNE_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.65986050745	2	454.659861	907.305168	2.2397	0.0010183	2.9792	0.0013545	5.2189	0.0023728	454.6611227114498	23.368	0.096512	23.355	23.307	23.403	-0.013294	1374	40	0.791392	0.024054885	0.7898726	321.79605	0	9.7812195						56	5	2	NaN	NaN	NaN	0.83211	1	6070	6070		4.9097	0.49665	1	3443.8	+		1572	9930	901	920	1229	1229					-0.15219229561751035
CDAEPMNE	8	Unmodified						0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	454.659861	907.305168	1.5883	0.00072211	3.4524	0.0015696	5.0406	0.0022918	454.661112592701	23.128	0.048281	23.128	23.103	23.152	0	1374	40	0.791392	0.024052322	0.791392	321.79605		9.780151	-0.11368	0.00022294	0.00075972	NaN	4.9097	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3819.4	+		1573	9930	901	920							-0.15219229561751035
CDAEPMNE	8	Unmodified						0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	454.659861	907.305168	2.2397	0.0010183	2.9792	0.0013545	5.2189	0.0023728	454.6611227114498	23.368	0.096512	23.355	23.307	23.403	-0.013294	1374	40	0.791392	0.024054885	0.7898726	321.79605		9.7812195	0.11368	-0.00020733	-0.00075972	NaN	4.9097	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3443.8	+		1574	9930	901	920							-0.15219229561751035
CDEEFACPEL	10	Unmodified	_CDEEFACPEL_					0	0	0		ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant;ENSG00000164742|ENST00000297323|ADCY1	ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.22028221605	2	578.220282	1154.42601	1.2729	0.00073602	1.2981	0.0007506	2.571	0.0014866	578.2217916197174	21.272	0.16831	21.258	21.234	21.402	-0.014004	1239	64	0.87444305	0.03867334	0.8729236	354.42908	0	15.675079						237	8	4	NaN	NaN	NaN	0.44258	1	14454	14454		21.835	0	1	31713			1575	12	902	921	1230	1230					-0.1450244663894864
CDEEFACPEL	10	Unmodified						0	0	0		ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant;ENSG00000164742|ENST00000297323|ADCY1	ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	578.220282	1154.42601	1.5821	0.00091479	0.50382	0.00029132	2.0859	0.0012061	578.221061955394	21.272	0.16855	21.272	21.2	21.368	0	1239	49	0.87444305	0.02945745	0.87444305	354.42908		11.939697	0.0069098	-0.0005114	0.00075972	NaN	21.835	205	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29657			1576	12	902	921							-0.1450244663894864
CDPEQFHEEN	10	Unmodified	_CDPEQFHEEN_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-11|NIN	REV__nc|ENSG00000100503|Q8N4C6-11|NIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.2353095035501	2	624.23531	1246.45607	1.16	0.00072414	8.4463	0.0052725	9.6063	0.0059966	624.2413097484838	31.934	0.048256	31.93	31.93	31.979	-0.0037613	1179	37	0.9112251	0.022045374	0.90970564	369.01544	0	8.927643						38	3	2	NaN	NaN	NaN	0.77144	1	16935	16935		2.5994	0.13793	1	2729.6	+		1577	13095	903	922	1231	1231					-0.15730371649397057
CDRCVRSQR	9	Unmodified	_CDRCVRSQR_					0	0	0			REV__FGD3|p.L585M|1|0.27|ENSG00000127084|chr9:93032841-93032841|C/A|missense_variant	REV__FGD3|p.L585M|1|0.27|ENSG00000127084|chr9:93032841-93032841|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.76639126445	2	561.766391	1121.51823	0.90316	0.00050736	-3.7844	-0.0021259	-2.8812	-0.0016186	561.7636169382787	31.163	0.14478	31.163	31.115	31.259	0	1254	61	0.8652351	0.03682977	0.8652351	350.81836	0	14.932983						171	7	2	NaN	NaN	NaN	0.59509	1	13735	13735		5.6942	1.2811	1	15302	+		1578	9431	904	923	1232	1232					-0.03766878991405065
CDTSSNEDVY	10	Unmodified	_CDTSSNEDVY_					0	0	0		nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.4099099865	1	1132.40991	1131.40263	1.5606	0.0017672	-5.8419	-0.0066155	-4.2814	-0.0048483	1132.4033999809167	34.709	0.04821	34.708	34.684	34.732	-0.00064468	150	49	1.5299006	0.028325915	1.5283811	310.1273	0	5.7419434						55	3	2	NaN	NaN	NaN	0.77729	1	13663	13663		1.1768	0.1048	1	3684			1579	4180	905	924	1233	1233					-0.15781169151910035
CEGFGQEGPA	10	Unmodified	_CEGFGQEGPA_					0	0	0			REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.70037426395	2	497.700374	993.386196	1.2675	0.00063084	0.52474	0.00026116	1.7923	0.00089201	497.7007700672052	27.977	0.048285	27.968	27.968	28.016	-0.0089798	1344	37	0.8098828	0.022179246	0.8083634	328.88895	0	9.006866						44	3	2	NaN	NaN	NaN	0.64158	1	8162	8162		12.049	1.4437	1	4377.8	+		1580	8746	906	925	1234	1234					-0.11076205527353977
CEGLPRLR	8	Unmodified	_CEGLPRLR_					0	0	0		ENST00000519067.5_1_8:142220968-142221217:-|nuORF	ENST00000519067.5_1_8:142220968-142221217:-|nuORF	ENST00000519067.5_1_8:142220968-142221217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5141963195001	1	943.514196	942.50692	0.14505	0.00013685	7.1978	0.0067913	7.3429	0.0069281	943.5205717543206	57.091	0.047981	57.09	57.066	57.114	-0.00053406	144	52	1.533442	0.030097842	1.5319226	311.5954	0	6.1158752						53	3	2	NaN	NaN	NaN	0.84455	1	6751	6751		2.7852	1.1148	1	5723			1581	7390	907	926	1235	1235					0.03336666976770175
CEGWEPEY	8	Unmodified	_CEGWEPEY_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.3716739867	1	1012.37167	1011.3644	2.118	0.0021442	5.1207	0.005184	7.2387	0.0073282	1012.3773127764911	28.194	0.072416	28.194	28.146	28.219	0	408	37	1.3769034	0.021448374	1.3769034	279.51227	0	4.354065						57	4	2	NaN	NaN	NaN	0.82332	1	9016	9016		6.0903	0.62448	1	3930.7			1582	1006	908	927	1236	1236					-0.14083010275930974
CEGWEPEY	8	Unmodified	_CEGWEPEY_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.3716739867	1	1012.37167	1011.3644	2.0604	0.0020859	4.5904	0.0046472	6.6508	0.0067331	1012.3771263219702	28.194	0.072456	28.185	28.161	28.233	-0.0089779	411	28	1.3751161	0.016085505	1.3735967	279.14944	0	3.2653809						50	4	2	NaN	NaN	NaN	0.82797	1	8841	8841		5.4659	2.3125	1	3459.7			1583	1006	908	927	1237	1237					-0.14083010275930974
CEKEYEERD	9	Unmodified	_CEKEYEERD_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.7455100491	2	600.74551	1199.47647	1.0836	0.00065095	6.2637	0.0037629	7.3473	0.0044138	600.7499394488156	20.814	0.14458	20.814	20.79	20.935	0	1170	82	0.91673553	0.049620926	0.91673553	371.40625	0	20.103424						239	7	4	NaN	NaN	NaN	0.51576	1	16446	16446		8.962	1.4216	1	24135	+		1584	13188	909	928	1238	1238					-0.11529200989616584
CEKEYEERD	9	Unmodified						0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.74551	1199.47647	1.0836	0.00065095	6.2637	0.0037629	7.3473	0.0044138	600.7499394488156	20.814	0.14458	20.814	20.79	20.935	0	1170	82	0.91673553	0.049620926	0.91673553	371.40625		20.103424	-0.0051108	-0.00057159	0.00075972	NaN	8.962	239	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24135	+		1585	13188	909	928							-0.11529200989616584
CEKTCFAI	8	Unmodified	_CEKTCFAI_					0	0	0		ENST00000432673.1_1_6:139013691-139017806:+|nuORF	ENST00000432673.1_1_6:139013691-139017806:+|nuORF	ENST00000432673.1_1_6:139013691-139017806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.4110363809001	1	914.411036	913.40376	1.5461	0.0014137	-4.8328	-0.0044192	-3.2868	-0.0030054	914.4069258211038	36.35	0.12051	36.35	36.302	36.422	0	366	49	1.4019053	0.028552294	1.4019053	284.99786	0	5.8045044						97	6	2	NaN	NaN	NaN	0.78967	1	6291	6291		10.605	0	1	6806.8			1586	6977	910	929	1239	1239					-0.056405815260518466
CERVLSDL	8	Unmodified	_CERVLSDL_					0	0	0			REV__ENST00000585164.2_1_17:79994733-79995558:-|nuORF	REV__ENST00000585164.2_1_17:79994733-79995558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4662430739	1	934.466243	933.458967	1.8104	0.0016917	-11.653	-0.010889	-9.8426	-0.0091976	934.4557533206116	25.178	0.024122	25.178	25.178	25.202	0	339	52	1.4179583	0.030309439	1.4179583	288.1694	0	6.159729						60	2	2	NaN	NaN	NaN	0.72013	1	6685	6685		17.799	1.2148	1	7919.2	+		1587	10562	911	930	1240	1240					-0.010424517339288286
CEYIMLKYFY	10	Unmodified	_CEYIMLKYFY_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.81943515465	2	686.819435	1371.62432	1.7511	0.0012027	-7.3451	-0.0050448	-5.594	-0.003842	686.8139854768054	23.778	0.12051	23.765	23.741	23.861	-0.013048	1107	70	0.9552588	0.042123973	0.9537394	386.4607	0	17.041718						136	6	2	NaN	NaN	NaN	0.5917	1	18880	18880		15.463	4.2923	1	16478			1588	8058	912	931	1241	1241					-0.04662980989314747
CFDEFNRIEL	10	Unmodified	_CFDEFNRIEL_					0	0	0		DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	2.1963	0.0014128	-1.4081	-0.00090584	0.78813	0.000507	643.2972203439759	23.513	0.14458	23.513	23.465	23.61	0	1002	124	1.0192708	0.07479197	1.0192708	412.6361	0	30.278381						471	7	3	NaN	NaN	NaN	0.77928	1	18506	18506		0.69115	0	1	54300			1589	7986;264	913	932	1242	1242					-0.050034544422260296
CFFHFTLW	8	Unmodified	_CFFHFTLW_					0	0	0			REV__ENST00000265801.6_2_8:20105580-20105898:-|nuORF	REV__ENST00000265801.6_2_8:20105580-20105898:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7547555581501	2	550.754756	1099.49496	1.4967	0.00082432	1.0481	0.00057727	2.5448	0.0014016	550.7555533515307	23.007	0.16857	22.993	22.969	23.137	-0.01354	1098	91	0.960755	0.054929554	0.9592356	389.6426	0	22.27716						244	8	3	NaN	NaN	NaN	0.84876	1	12485	12485		0.39566	0.065779	1	23892	+		1590	11573	914	933	1243	1243					-0.0508094976639768
CFSRVTAAHGG	11	Unmodified	_CFSRVTAAHGG_					0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2640073635	2	553.264007	1104.51346	1.1607	0.00064219	-8.6055	-0.0047611	-7.4448	-0.0041189	553.7600991224513	31.234	0.14481	31.229	31.157	31.302	-0.0050716	1230	49	0.8799654	0.02945429	0.878446	356.85764	0	11.944763						80	7	2	NaN	NaN	NaN	0.57257	1	12683	12683		15.822	0.64654	1	6993.8	+		1591	9784	915	934	1244	1244					-0.03461439862530824
CFSRVTAAHGG	11	Unmodified						0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.264007	1104.51346	0.47465	0.0002626	-3.366	-0.0018623	-2.8914	-0.0015997	553.263258504289	31.163	0.096533	31.163	31.139	31.235	0	1239	46	0.87444305	0.027608931	0.87444305	354.6181		11.196411	-0.03315	0.00273	-0.0020015	NaN	15.822	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9642	+		1592	9784	915	934							-0.03461439862530824
CFSRVTAAHGG	11	Unmodified						0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.264007	1104.51346	1.1607	0.00064219	-8.6055	-0.0047611	-7.4448	-0.0041189	553.7600991224513	31.234	0.14481	31.229	31.157	31.302	-0.0050716	1230	49	0.8799654	0.02945429	0.878446	356.85764		11.944763	0.03315	-0.0030677	0.0020015	NaN	15.822	80	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6993.8	+		1593	9784	915	934							-0.03461439862530824
CFTWDQQLL	9	Unmodified	_CFTWDQQLL_					0	0	0			REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	REV__ENST00000477553.1_1_9:124091151-124091454:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.2709667283501	2	577.270967	1152.52738	1.5251	0.00088041	0.30901	0.00017838	1.8341	0.0010588	577.2702937836841	24.623	0.26525	24.623	24.454	24.719	0	1239	73	0.87444305	0.0441671	0.87444305	354.43597	0	17.90216						280	12	3	NaN	NaN	NaN	0.35794	1	14881	14881		15.463	1.9996	1	43873	+		1594	12360	916	935	1245	1245					-0.0427820715406142
CFWAVQQAFL	10	Unmodified	_CFWAVQQAFL_					0	0	0		ENST00000483497.6_2_9:134065850-134070628:+|nuORF	ENST00000483497.6_2_9:134065850-134070628:+|nuORF	ENST00000483497.6_2_9:134065850-134070628:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7971516891	2	606.797152	1211.57975	1.4015	0.00085044	0.61582	0.00037368	2.0173	0.0012241	606.7970779035259	23.706	0.12051	23.706	23.682	23.803	0	1032	94	1.0010062	0.05662924	1.0010062	405.50165	0	22.940155						274	6	3	NaN	NaN	NaN	0.77884	1	16761	16761		0.79988	0	1	27712			1595	7219	917	936	1246	1246					-0.01757624020478943
CFYCSSEA	8	Unmodified	_CFYCSSEA_					0	0	0			REV__ENST00000513679.1_1_4:515547-515999:+|nuORF	REV__ENST00000513679.1_1_4:515547-515999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.15949636669995	2	455.159496	908.30444	2.9051	0.0013223	5.5236	0.0025141	8.4287	0.0038364	455.16361829000505	22.91	0.07238	22.896	22.848	22.921	-0.01354	1371	22	0.79324204	0.012951255	0.7917226	322.543	0	5.2661743						30	4	2	NaN	NaN	NaN	0.84692	1	6083	6083		1.4396	0.19772	1	1472.1	+		1596	10695	918	937	1247	1247					-0.15338024210814183
CFYGTNAGWIS	11	Unmodified	_CFYGTNAGWIS_					0	0	0		ENST00000275227.8_2_6:133092229-133093282:-|nuORF	ENST00000275227.8_2_6:133092229-133093282:-|nuORF	ENST00000275227.8_2_6:133092229-133093282:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.76604852595	2	609.766049	1217.51754	0.85709	0.00052262	-8.7192	-0.0053167	-7.8621	-0.0047941	609.7611175839864	32.056	0.14477	32.056	32.008	32.152	0	1206	97	0.894683	0.058863997	0.894683	362.41083	0	23.844147						435	7	4	NaN	NaN	NaN	0.51407	1	16917	16917		17.97	2.507	1	68009			1597	6350	919	938	1248	1248					-0.08251395159459207
CFYGTNAGWIS	11	Unmodified						0	0	0		ENST00000275227.8_2_6:133092229-133093282:-|nuORF	ENST00000275227.8_2_6:133092229-133093282:-|nuORF	ENST00000275227.8_2_6:133092229-133093282:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.766049	1217.51754	0.33162	0.00020221	-9.891	-0.0060312	-9.5594	-0.005829	609.7604985992099	32.055	0.1689	32.051	32.003	32.172	-0.0037613	1203	85	0.8965218	0.051505983	0.89500237	363.1557		20.863617	-0.0024367	-0.00091188	0.00015968	NaN	17.97	424	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63400			1598	6350	919	938							-0.08251395159459207
CGAAAQPP	8	Unmodified	_CGAAAQPP_					0	0	0		ENSG00000159267|ENST00000674895|HLCS	ENSG00000159267|ENST00000674895|HLCS	ENSG00000159267|ENST00000674895|HLCS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.3239359331001	1	714.323936	713.316659	0.48251	0.00034467	7.0096	0.0050072	7.4922	0.0053518	714.3306895496547	40.2	0.024036	40.2	40.176	40.2	0	708	61	1.1972283	0.036115766	1.1972283	244.39954	0	7.3726044						66	2	2	NaN	NaN	NaN	0.84692	1	3476	3476		1.4396	0	1	11163			1599	4018	920	939	1249	1249					-0.05146619685456244
CGAKGGVV	8	Unmodified	_CGAKGGVV_					0	0	0			REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.0699	0.00073859	4.1443	0.0028611	5.2142	0.0035997	690.3632621844761	40.32	0.31268	40.32	40.2	40.512	0	738	52	1.179155	0.030736208	1.179155	240.86769	0	6.278534						307	14	3	NaN	NaN	NaN	0.84876	1	3019	3019		0.39566	0.065779	1	45546	+		1600	11422	921	940	1250	1250					-0.004057427887460108
CGAKGGVV	8	Unmodified						0	0	0			REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.0699	0.00073859	4.1443	0.0028611	5.2142	0.0035997	690.3632621844761	40.32	0.31268	40.32	40.2	40.512	0	738	52	1.179155	0.030736208	1.179155	240.86769		6.278534	0	0	0	NaN	0.39566	307	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45546	+		1601	11422	921	940							-0.004057427887460108
CGALSKGS	8	Unmodified	_CGALSKGS_					0	0	0			REV__ENST00000488292.1_1_9:35738625-35739104:-|nuORF	REV__ENST00000488292.1_1_9:35738625-35739104:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3501506836002	1	722.350151	721.342874	1.8765	0.0013555	4.0401	0.0029184	5.9166	0.0042738	722.3527915829926	25.539	0.19307	25.528	25.383	25.576	-0.0116	717	46	1.1918083	0.027099848	1.1902889	243.24211	0	5.530945						140	9	2	NaN	NaN	NaN	0.84512	1	3536	3536		2.4615	0	1	9747.9	+		1602	12440	922	941	1251	1251					-0.028943505139636727
CGCDHDCG	8	Unmodified	_CGCDHDCG_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8;ENST00000596224.5_1_19:17005229-17007510:-|nuORF	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.10419821324996	2	405.104198	808.193843	1.6724	0.00067751	-11.528	-0.0046699	-9.8553	-0.0039924	405.0997211859342	25.974	0.19308	25.974	25.901	26.094	0	1482	55	0.72465914	0.033424437	0.72465914	295.1993	0	13.615875						228	9	3	NaN	NaN	NaN	0.84887	1	4854	4854		0.32989	0	1	20030			1603	4044	923	942	1252	1252					-0.21792567470697577
CGCGKGCC	8	Unmodified	_CGCGKGCC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.2139332526	1	730.213933	729.206657	1.5031	0.0010976	-10.213	-0.0074579	-8.7102	-0.0063603	730.2074308370823	55.124	0.07238	55.124	55.1	55.172	0	579	49	1.2747238	0.028769255	1.2747238	260.1125	0	5.8704834						88	4	3	NaN	NaN	NaN	0.84945	1	3746	3746		0	0	1	7467.4			1604	8060	924	943	1253	1253					-0.16877827612154306
CGDSGAVK	8	Unmodified	_CGDSGAVK_					0	0	0		tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	368.66834585405	2	368.668346	735.322139	0.94535	0.00034852	-10.668	-0.0039329	-9.7224	-0.0035844	368.66448162889907	54.546	0.048187	54.545	54.497	54.545	-0.00061798	1503	31	0.711653	0.018587232	0.71013355	290.37946	0	7.584259						43	3	2	NaN	NaN	NaN	0.84727	1	3754	3754		1.2418	0.16982	1	2196.4			1605	13955	925	944	1254	1254					-0.056109408936322325
CGEACGCC	8	Unmodified	_CGEACGCC_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.1772133953	1	745.177213	744.169937	0.61146	0.00045565	-10.098	-0.0075251	-9.487	-0.0070695	745.1707135124811	59.802	0.071918	59.802	59.73	59.802	-0.0004425	621	31	1.2495319	0.018007636	1.2480124	254.87738	0	3.673172						54	4	2	NaN	NaN	NaN	0.84876	1	3888	3888		0.39566	0.39566	1	2909.5			1606	4446	926	945	1255	1255					-0.21238124228727884
CGECSHDG	8	Unmodified	_CGECSHDG_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2396139562001	1	807.239614	806.232337	1.6641	0.0013434	-6.2001	-0.0050049	-4.5359	-0.0036616	807.2347542623778	35.988	0.31348	35.988	35.892	36.205	0	582	94	1.2729256	0.055737615	1.2729256	259.2873	0	11.353394						337	14	2	NaN	NaN	NaN	0.84455	1	4825	4825		2.7852	1.1148	1	24335	+		1607	8349	927	946	1256	1256					-0.17852938564521992
CGECSHDG	8	Unmodified	_CGECSHDG_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2396139562001	1	807.239614	806.232337	1.5727	0.0012695	-5.5625	-0.0044903	-3.9898	-0.0032207	807.2350812309064	34.709	0.19279	34.708	34.612	34.804	-0.00064468	582	106	1.2729256	0.06293619	1.2714062	259.2873	0	12.819748						370	9	2	NaN	NaN	NaN	0.84455	1	4734	4734		2.7852	1.5433	1	77965	+		1608	8349	927	946	1257	1257					-0.17852938564521992
CGECSHDG	8	Unmodified						0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.239614	806.232337	1.7816	0.0014382	-5.9466	-0.0048003	-4.165	-0.0033621	807.2347214431115	34.324	0.09639	34.324	34.3	34.396	0	579	115	1.2747238	0.06833446	1.2747238	259.65356		13.919312	-0.19193	-0.00022043	0.0016588	NaN	2.7852	242	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28757	+		1609	8349	927	946							-0.17852938564521992
CGECSHDG	8	Unmodified						0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.239614	806.232337	1.5727	0.0012695	-5.5625	-0.0044903	-3.9898	-0.0032207	807.2350812309064	34.709	0.19279	34.708	34.612	34.804	-0.00064468	582	106	1.2729256	0.06293619	1.2714062	259.2873		12.819748	0.19193	8.9587E-05	-0.0016588	NaN	2.7852	370	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77965	+		1610	8349	927	946							-0.17852938564521992
CGEVVVFL	8	Unmodified	_CGEVVVFL_					0	0	0		ENST00000367023.5_2_1:209941899-209946303:+|nuORF	ENST00000367023.5_2_1:209941899-209946303:+|nuORF	ENST00000367023.5_2_1:209941899-209946303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4488020957002	1	865.448802	864.441526	1.6989	0.0014703	-0.59066	-0.00051119	1.1082	0.00095911	865.4482114156112	30.366	0.12067	30.366	30.318	30.439	0	387	61	1.389409	0.035720825	1.389409	282.69485	0	7.267914						175	6	3	NaN	NaN	NaN	0.50567	1	5585	5585		30.791	5.0393	1	21143			1611	6618	928	947	1258	1258					0.0038825273107931935
CGFGMCTG	8	Unmodified	_CGFGMCTG_					0	0	0			REV__ENST00000478412.1_1_13:47254285-47255964:+|nuORF	REV__ENST00000478412.1_1_13:47254285-47255964:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2571782758	1	775.257178	774.249902	1.8044	0.0013988	-9.2047	-0.007136	-7.4003	-0.0057371	775.2537337526015	59.516	0.072029	59.516	59.516	59.588	0	600	49	1.2621325	0.028790832	1.2621325	257.26663	0	5.868561						95	4	2	NaN	NaN	NaN	0.84876	1	4412	4412		0.39566	0.065779	1	8060.8	+		1612	12363	929	948	1259	1259					-0.1462531456322722
CGGAAVLF	8	Unmodified	_CGGAAVLF_					0	0	0		ENST00000513876.3_1_4:165878121-165878319:+|nuORF	ENST00000513876.3_1_4:165878121-165878319:+|nuORF	ENST00000513876.3_1_4:165878121-165878319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3650724663	1	737.365072	736.357796	1.2029	0.00088697	-2.7292	-0.0020124	-1.5263	-0.0011255	737.3624426971348	31.911	0.07242	31.911	31.887	31.959	0	558	37	1.2873057	0.021556258	1.2873057	262.63278	0	4.3978577						40	4	2	NaN	NaN	NaN	0.83849	1	3848	3848		4.0537	0	1	2545.1			1613	7368	930	949	1260	1260					-0.020928586459831422
CGGAAVLF	8	Unmodified	_CGGAAVLF_					0	0	0		ENST00000513876.3_1_4:165878121-165878319:+|nuORF	ENST00000513876.3_1_4:165878121-165878319:+|nuORF	ENST00000513876.3_1_4:165878121-165878319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3650724663	1	737.365072	736.357796	1.321	0.00097403	-3.9139	-0.0028859	-2.5929	-0.0019119	737.36231507842	31.886	0.072376	31.881	31.881	31.954	-0.0044155	552	43	1.2908988	0.025154352	1.2893794	263.36584	0	5.1319275						76	4	2	NaN	NaN	NaN	0.84651	1	3773	3773		1.6704	1.2747	1	4193.5			1614	7368	930	949	1261	1261					-0.020928586459831422
CGGDDSTC	8	Unmodified	_CGGDDSTC_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.2127305037	1	757.212731	756.205454	2.6253	0.0019879	-12.067	-0.0091374	-9.4419	-0.0071495	757.2009728220611	11.5	0.072076	11.5	11.476	11.548	0	1197	28	0.9001988	0.016545653	0.9001988	183.56815	0	3.3739777						33	4	2	NaN	NaN	NaN	0.84887	1	4168	4168		0.32989	0	1	1566			1615	3418	931	950	1262	1262					-0.1824004717570915
CGGGGYGG	8	Unmodified	_CGGGGYGG_					0	0	0		ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000432375.1_1_6:32293532-32293889:+|nuORF	ENSG00000139675|ENST00000357495|HNRNPA1L2	ENSG00000139675|ENST00000357495|HNRNPA1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2191365106002	1	627.219137	626.21186	2.2371	0.0014031	1.2268	0.00076944	3.4638	0.0021726	627.2194399584605	26.022	0.072424	26.011	26.011	26.083	-0.011135	819	46	1.1302601	0.02719593	1.1287407	231.33261	0	5.5662384						72	4	2	NaN	NaN	NaN	0.84945	1	1196	1196		0	0	1	4775.4			1616	3232	932	951	1263	1263					-0.11619741162007813
CGGKGGFG	8	Unmodified	_CGGKGGFG_					0	0	0		nc|ENSG00000143751|Q6IQ49-2|SDE2;ENSG00000143751|ENST00000272091|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	341.6524988246	2	341.652499	681.290445	1.088	0.00037171	6.1293	0.0020941	7.2173	0.0024658	341.65552445669175	33.407	0.21716	33.407	33.359	33.576	0	1527	76	0.69677675	0.046490908	0.69677675	284.72046	0	18.997345						416	10	4	NaN	NaN	NaN	0.84887	1	2863	2863		0.32989	0.32989	1	54529			1617	3447	933	952	1264	1264					-0.06294888856928083
CGGKGGFG	8	Unmodified	_CGGKGGFG_					0	0	0		nc|ENSG00000143751|Q6IQ49-2|SDE2;ENSG00000143751|ENST00000272091|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.2977211826001	1	682.297721	681.290445	2.1098	0.0014395	-5.5539	-0.0037894	-3.4442	-0.0023499	682.2944662064895	26.07	0.14482	26.059	25.987	26.131	-0.011137	1113	55	0.9515937	0.03298968	0.95007426	194.42824	0	6.740402						145	7	2	NaN	NaN	NaN	0.84876	1	2774	2774		0.39566	0.39566	1	14385			1618	3447	933	952	1265	1265					-0.06294888856928083
CGGKGGFG	8	Unmodified						0	0	0		nc|ENSG00000143751|Q6IQ49-2|SDE2;ENSG00000143751|ENST00000272091|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	341.652499	681.290445	1.0285	0.00035139	6.0964	0.0020828	7.1249	0.0024342	341.65545150994825	33.406	0.19305	33.404	33.356	33.549	-0.0018501	1527	70	0.69677675	0.042776287	0.6952573	284.72046		17.479431	-0.0015985	-9.4721E-06	-0.00075972	NaN	0.32989	367	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54096			1619	3447	933	952							-0.06294888856928083
CGGLCYGC	8	Unmodified	_CGGLCYGC_					0	0	0			REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2571782758	1	775.257178	774.249902	1.7954	0.0013919	-9.9922	-0.0077465	-8.1969	-0.0063547	775.2530188639452	59.468	0.095932	59.468	59.396	59.492	0	597	49	1.2639319	0.028790832	1.2639319	257.6334	0	5.868561						141	5	3	NaN	NaN	NaN	0.84876	1	4409	4409		0.39566	0.39566	1	10378	+		1620	11726	934	953	1266	1266					-0.1462531456322722
CGGLCYGC	8	Unmodified						0	0	0			REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.257178	774.249902	1.7954	0.0013919	-9.9922	-0.0077465	-8.1969	-0.0063547	775.2530188639452	59.468	0.095932	59.468	59.396	59.492	0	597	49	1.2639319	0.028790832	1.2639319	257.6334		5.868561	0.097324	-0.00041883	-0.0019387	NaN	0.39566	141	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10378	+		1621	11726	934	953							-0.1462531456322722
CGGLCYGC	8	Unmodified						0	0	0			REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	REV__ENST00000323039.9_2_19:40321124-40324722:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.257178	774.249902	0.0069738	5.4065E-06	-8.8559	-0.0068656	-8.8489	-0.0068602	775.2547847670421	59.274	0.095798	59.274	59.178	59.274	-0.00045395	588	55	1.2693287	0.032382727	1.2678093	258.73346		6.6007385	-0.097324	0.00046208	0.0019387	NaN	0.39566	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7138.8	+		1622	11726	934	953							-0.1462531456322722
CGHAAAGL	8	Unmodified	_CGHAAAGL_					0	0	0			REV__ENST00000454486.4_1_15:32828531-32828903:-|nuORF	REV__ENST00000454486.4_1_15:32828531-32828903:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3242702841	1	699.32427	698.316994	0.94774	0.00066278	-5.8516	-0.0040922	-4.9039	-0.0034294	699.3199454077172	28.725	0.096514	28.716	28.692	28.789	-0.0083504	708	55	1.1972283	0.0325042	1.1957089	244.49847	0	6.6380157						94	5	2	NaN	NaN	NaN	0.83849	1	3123	3123		4.0537	2.3833	1	6954.8	+		1623	12240	935	954	1267	1267					-0.044231999656062726
CGKLGPGL	8	Unmodified	_CGKLGPGL_					0	0	0		ENST00000263360.10_1_11:85955988-85956345:+|nuORF	ENST00000263360.10_1_11:85955988-85956345:+|nuORF	ENST00000263360.10_1_11:85955988-85956345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.4072716320001	1	744.407272	743.399995	-0.1575	-0.00011724	-8.7697	-0.0065282	-8.9272	-0.0066455	744.4005952385904	56.851	0.16812	56.85	56.754	56.922	-0.00056458	507	73	1.3178225	0.043043613	1.316303	268.81223	0	8.780121						165	8	2	NaN	NaN	NaN	0.84692	1	3881	3881		1.4396	0	1	11309			1624	6317	936	955	1268	1268					0.0180311676239171
CGMAWCPC	8	Unmodified	_CGMAWCPC_					0	0	0		ENST00000551692.5_1_14:105834472-105850026:+|nuORF	ENST00000551692.5_1_14:105834472-105850026:+|nuORF	ENST00000551692.5_1_14:105834472-105850026:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.2765335094	1	870.276534	869.269257	0.36984	0.00032186	1.7867	0.0015549	2.1565	0.0018768	870.2782776426242	33.551	0.21716	33.549	33.476	33.694	-0.0018463	507	76	1.3178225	0.044834614	1.316303	268.10623	0	9.121429						220	10	3	NaN	NaN	NaN	0.84651	1	5511	5511		1.6704	0	1	18308			1625	7548	937	956	1269	1269					-0.17060681543966894
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	2.0116	0.0016239	-8.4829	-0.0068478	-6.4713	-0.0052239	807.2348424530277	34.686	0.19295	34.686	34.614	34.806	0	585	112	1.2711272	0.06653261	1.2711272	258.921	0	13.552292						584	9	4	NaN	NaN	NaN	0.84651	1	4816	4816		1.6704	0.42852	1	93957	+		1626	12940	938	957	1270	1270					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	2.0743	0.0016744	-8.367	-0.0067542	-6.2927	-0.0050797	807.234853137665	34.541	0.16893	34.541	34.421	34.589	0	585	94	1.2711272	0.055761337	1.2711272	258.921	0	11.358261						371	8	3	NaN	NaN	NaN	0.84651	1	4817	4817		1.6704	0.42852	1	44060	+		1627	12940	938	957	1271	1271					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.2491	0.0010083	-7.5411	-0.0060874	-6.292	-0.0050791	807.2352057700273	33.721	0.12067	33.721	33.648	33.769	0	582	82	1.2729256	0.0485456	1.2729256	259.2873	0	9.888458						337	6	4	NaN	NaN	NaN	0.84651	1	4818	4818		1.6704	1.3405	1	41636	+		1628	12940	938	957	1272	1272					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.6852	0.0013603	-7.9531	-0.00642	-6.2679	-0.0050597	807.2347041582583	34.179	0.21716	34.179	34.059	34.276	0	603	106	1.2603331	0.06296313	1.2603331	256.72226	0	12.825195						643	10	3	NaN	NaN	NaN	0.84651	1	4819	4819		1.6704	0.42852	1	75842	+		1629	12940	938	957	1273	1273					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.9193	0.0015494	-8.1002	-0.0065388	-6.1808	-0.0049894	807.2346947469315	36.88	0.38488	36.88	36.712	37.097	0	597	103	1.2639319	0.06114781	1.2639319	257.45532	0	12.45546						845	17	4	NaN	NaN	NaN	0.83849	1	4821	4821		4.0537	2.8118	1	123450	+		1630	12940	938	957	1274	1274					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.6649	0.001344	-7.7645	-0.0062678	-6.0996	-0.0049239	807.2346033982152	37.362	0.48166	37.362	37.121	37.602	0	582	136	1.2729256	0.08097005	1.2729256	259.2873	0	16.493088						1328	21	3	NaN	NaN	NaN	0.84651	1	4822	4822		1.6704	0.42852	1	178610	+		1631	12940	938	957	1275	1275					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.37	0.0011059	-7.2975	-0.0058908	-5.9275	-0.0047849	807.2351722610074	33.842	0.24129	33.842	33.793	34.035	0	576	112	1.2765218	0.0664829	1.2765218	260.0198	0	13.54216						812	11	4	NaN	NaN	NaN	0.83849	1	4823	4823		4.0537	1.2685	1	89158	+		1632	12940	938	957	1276	1276					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.1926	0.00096268	-6.969	-0.0056256	-5.7764	-0.004663	807.2352365272161	37.675	0.096317	37.675	37.65	37.747	0	588	94	1.2693287	0.05578518	1.2693287	258.55463	0	11.363113						146	5	2	NaN	NaN	NaN	0.84651	1	4824	4824		1.6704	1.2747	1	13599	+		1633	12940	938	957	1277	1277					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.1591	0.00093571	-5.9421	-0.0047967	-4.783	-0.003861	807.2353479295359	37.795	0.096191	37.795	37.747	37.843	0	579	88	1.2747238	0.052175045	1.2747238	259.65356	0	10.627731						144	5	2	NaN	NaN	NaN	0.84651	1	4828	4828		1.6704	0.42852	1	12412	+		1634	12940	938	957	1278	1278					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2404823541001	1	807.240482	806.233206	1.139	0.00091948	-5.1684	-0.0041722	-4.0294	-0.0032527	807.2374904619596	37.939	0.072083	37.939	37.867	37.939	0	570	58	1.2801172	0.034165382	1.2801172	260.75217	0	6.9592743						109	4	2	NaN	NaN	NaN	0.84651	1	4829	4829		1.6704	1.2747	1	8327.7	+		1635	12940	938	957	1279	1279					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.4171	0.0011439	-7.944	-0.0064127	-6.5269	-0.0052688	807.2338270244773	34.95	0.072357	34.95	34.926	34.998	-4.5776E-05	585	85	1.2711272	0.050356984	1.2696078	258.921	0	10.257431						137	4	2	NaN	NaN	NaN	0.84651	1	4723	4723		1.6704	0.42852	1	15837	+		1636	12940	938	957	1280	1280					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.5986	0.0012905	-7.7607	-0.0062647	-6.162	-0.0049742	807.2348086234514	33.261	0.53085	33.259	33.09	33.621	-0.0024757	594	151	1.265731	0.08996177	1.2642115	257.8218	0	18.324692						1541	23	3	NaN	NaN	NaN	0.84651	1	4726	4726		1.6704	0	1	507750	+		1637	12940	938	957	1281	1281					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.369	0.0011051	-7.4626	-0.0060241	-6.0935	-0.0049189	807.2351525596007	34.323	0.16862	34.322	34.274	34.442	-0.0012474	579	118	1.2747238	0.07013655	1.2732043	259.65356	0	14.286377						417	8	3	NaN	NaN	NaN	0.84651	1	4727	4727		1.6704	1.2747	1	39897	+		1638	12940	938	957	1282	1282					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.4308	0.001155	-7.4251	-0.0059938	-5.9943	-0.0048388	807.2347302028638	37.6	0.072224	37.603	37.603	37.675	0.0028267	588	100	1.2693287	0.059396982	1.2678093	258.55463	0	12.098801						187	4	3	NaN	NaN	NaN	0.84651	1	4728	4728		1.6704	1.3405	1	14476	+		1639	12940	938	957	1283	1283					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	0.89974	0.0007263	-6.8524	-0.0055316	-5.9527	-0.0048053	807.2353183004155	33.72	0.096527	33.718	33.67	33.766	-0.0018463	579	79	1.2747238	0.04674518	1.2732043	259.65356	0	9.521713						271	5	3	NaN	NaN	NaN	0.83849	1	4729	4729		4.0537	3.658	1	36283	+		1640	12940	938	957	1284	1284					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.1099	0.00089596	-7.0389	-0.005682	-5.929	-0.0047861	807.2353001286173	35.263	0.14485	35.263	35.215	35.36	-4.5776E-05	591	76	1.26753	0.044964075	1.2660105	258.18823	0	9.158905						336	7	4	NaN	NaN	NaN	0.84651	1	4730	4730		1.6704	0.2308	1	40499	+		1641	12940	938	957	1285	1285					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.43	0.0011544	-7.3454	-0.0059295	-5.9153	-0.0047751	807.2355268136482	34.54	0.14473	34.539	34.419	34.563	-0.00064468	582	100	1.2729256	0.0593462	1.2714062	259.2873	0	12.088486						375	7	3	NaN	NaN	NaN	0.84651	1	4731	4731		1.6704	0.2308	1	43907	+		1642	12940	938	957	1286	1286					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.1673	0.00094226	-5.9713	-0.0048203	-4.8041	-0.003878	807.2358239078843	33.84	0.24131	33.839	33.79	34.032	-0.0018463	573	115	1.2783196	0.06829059	1.2768002	260.38602	0	13.9104						589	11	2	NaN	NaN	NaN	0.84651	1	4736	4736		1.6704	0.42852	1	77936	+		1643	12940	938	957	1287	1287					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.4757	0.0011912	-6.1496	-0.0049642	-4.6739	-0.003773	807.235378839634	37.359	0.43336	37.362	37.121	37.555	0.0028229	582	127	1.2729256	0.07556784	1.2714062	259.2873	0	15.392715						923	19	2	NaN	NaN	NaN	0.84651	1	4737	4737		1.6704	1.2747	1	144830	+		1644	12940	938	957	1288	1288					-0.177661387208218
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2404823541001	1	807.240482	806.233206	1.788	0.0014433	-6.0511	-0.0048847	-4.2631	-0.0034413	807.2356064568858	37.985	0.12019	37.988	37.916	38.036	0.0034256	570	67	1.2801172	0.03954935	1.2785977	260.75217	0	8.055969						135	6	2	NaN	NaN	NaN	0.84651	1	4738	4738		1.6704	1.3405	1	9114.4	+		1645	12940	938	957	1289	1289					-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	2.0743	0.0016744	-8.367	-0.0067542	-6.2927	-0.0050797	807.234853137665	34.541	0.16893	34.541	34.421	34.589	0	585	94	1.2711272	0.055761337	1.2711272	258.921		11.358261	0.00098432	-0.00035398	-0.00013947	NaN	1.6704	371	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44060	+		1646	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.6852	0.0013603	-7.9531	-0.00642	-6.2679	-0.0050597	807.2347041582583	34.179	0.21716	34.179	34.059	34.276	0	603	106	1.2603331	0.06296313	1.2603331	256.72226		12.825195	-0.010882	-6.8331E-05	-0.0010397	NaN	1.6704	643	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75842	+		1647	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	2.0116	0.0016239	-8.4829	-0.0068478	-6.4713	-0.0052239	807.2348424530277	34.686	0.19295	34.686	34.614	34.806	0	585	112	1.2711272	0.06653261	1.2711272	258.921		13.552292	-0.19216	-0.00062629	0.00075972	NaN	1.6704	584	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93957	+		1648	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.9193	0.0015494	-8.1002	-0.0065388	-6.1808	-0.0049894	807.2346947469315	36.88	0.38488	36.88	36.712	37.097	0	597	103	1.2639319	0.06114781	1.2639319	257.45532		12.45546	-0.012052	-0.00032859	-0.00013985	NaN	4.0537	845	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123450	+		1649	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.2491	0.0010083	-7.5411	-0.0060874	-6.292	-0.0050791	807.2352057700273	33.721	0.12067	33.721	33.648	33.769	0	582	82	1.2729256	0.0485456	1.2729256	259.2873		9.888458	0.0015528	-0.00023172	-0.00013937	NaN	4.0537	337	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41636	+		1650	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.1926	0.00096268	-6.969	-0.0056256	-5.7764	-0.004663	807.2352365272161	37.675	0.096317	37.675	37.65	37.747	0	588	94	1.2693287	0.05578518	1.2693287	258.55463		11.363113	0.035928	0.00018798	0.00075972	NaN	1.6704	146	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13599	+		1651	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.6649	0.001344	-7.7645	-0.0062678	-6.0996	-0.0049239	807.2346033982152	37.362	0.48166	37.362	37.121	37.602	0	582	136	1.2729256	0.08097005	1.2729256	259.2873		16.493088	-0.0002214	-0.00071072	0.00075972	NaN	1.6704	1328	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178610	+		1652	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.37	0.0011059	-7.2975	-0.0058908	-5.9275	-0.0047849	807.2351722610074	33.842	0.24129	33.842	33.793	34.035	0	576	112	1.2765218	0.0664829	1.2765218	260.0198		13.54216	0.0015243	-0.00059121	-0.00013918	NaN	4.0537	812	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89158	+		1653	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.240482	806.233206	1.139	0.00091948	-5.1684	-0.0041722	-4.0294	-0.0032527	807.2374904619596	37.939	0.072083	37.939	37.867	37.939	0	570	58	1.2801172	0.034165382	1.2801172	260.75217		6.9592743	-0.024488	0.0004041	0.00075972	NaN	1.6704	109	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8327.7	+		1654	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.43	0.0011544	-7.3454	-0.0059295	-5.9153	-0.0047751	807.2355268136482	34.54	0.14473	34.539	34.419	34.563	-0.00064468	582	100	1.2729256	0.0593462	1.2714062	259.2873		12.088486	-0.00098432	0.00047071	0.00013947	NaN	1.6704	375	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43907	+		1655	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.2459	0.0010057	-6.603	-0.0053302	-5.3571	-0.0043245	807.23528525699	35.07	0.14481	35.07	35.046	35.191	-4.5776E-05	585	88	1.2711272	0.052152634	1.2696078	258.921		10.623184	0.19216	0.00089129	-0.00075972	NaN	1.6704	259	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29072	+		1656	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	0.89974	0.0007263	-6.8524	-0.0055316	-5.9527	-0.0048053	807.2353183004155	33.72	0.096527	33.718	33.67	33.766	-0.0018463	579	79	1.2747238	0.04674518	1.2732043	259.65356		9.521713	-0.0015528	0.00032416	0.00013937	NaN	4.0537	271	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36283	+		1657	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.4308	0.001155	-7.4251	-0.0059938	-5.9943	-0.0048388	807.2347302028638	37.6	0.072224	37.603	37.603	37.675	0.0028267	588	100	1.2693287	0.059396982	1.2678093	258.55463		12.098801	-0.035928	-0.00018021	-0.00075972	NaN	1.6704	187	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14476	+		1658	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.4757	0.0011912	-6.1496	-0.0049642	-4.6739	-0.003773	807.235378839634	37.359	0.43336	37.362	37.121	37.555	0.0028229	582	127	1.2729256	0.07556784	1.2714062	259.2873		15.392715	0.0002214	0.00059289	-0.00075972	NaN	1.6704	923	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144830	+		1659	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.1673	0.00094226	-5.9713	-0.0048203	-4.8041	-0.003878	807.2358239078843	33.84	0.24131	33.839	33.79	34.032	-0.0018463	573	115	1.2783196	0.06829059	1.2768002	260.38602		13.9104	-0.0015243	0.0004793	0.00013918	NaN	4.0537	589	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77936	+		1660	12940	938	957							-0.177661387208218
CGMHPCGC	8	Unmodified						0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.240482	806.233206	1.788	0.0014433	-6.0511	-0.0048847	-4.2631	-0.0034413	807.2356064568858	37.985	0.12019	37.988	37.916	38.036	0.0034256	570	67	1.2801172	0.03954935	1.2785977	260.75217		8.055969	0.024488	-0.0003084	-0.00075972	NaN	1.6704	135	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9114.4	+		1661	12940	938	957							-0.177661387208218
CGPEDGAA	8	Unmodified	_CGPEDGAA_					0	0	0			REV__ENSG00000112541|ENST00000539869|PDE10A	REV__ENSG00000112541|ENST00000539869|PDE10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.2664806337	1	719.266481	718.259204	1.9827	0.0014261	-1.9494	-0.0014021	0.033343	2.3982E-05	719.265611064321	26.022	0.096544	26.011	25.938	26.035	-0.011135	705	88	1.1990347	0.052381873	1.1975152	244.73656	0	10.691742						167	5	2	NaN	NaN	NaN	0.84692	1	3492	3492		1.4396	1.0439	1	18398	+		1662	9122	939	958	1290	1290					-0.11119506681689018
CGSFRKALF	9	Unmodified	_CGSFRKALF_					0	0	0			REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7709369386	2	514.770937	1027.52732	0.92416	0.00047573	5.5938	0.0028795	6.5179	0.0033552	514.7738121329962	29.811	0.1689	29.803	29.731	29.9	-0.0070648	1224	46	0.883646	0.027608931	0.88212657	358.68085	0	11.206726						167	8	3	NaN	NaN	NaN	0.44082	1	9485	9485		12.049	2.9255	1	16173	+		1663	9817	940	959	1291	1291					0.014658376365787262
CGSFRKALF	9	Unmodified						0	0	0			REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.770937	1027.52732	1.9728	0.0010155	4.6494	0.0023934	6.6221	0.0034089	514.7734828578464	29.811	0.19307	29.811	29.715	29.908	0	1230	40	0.8799654	0.023927689	0.8799654	357.18686		9.712494	0.0039724	-0.00060949	-0.0010806	NaN	12.049	147	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13715	+		1664	9817	940	959							0.014658376365787262
CGSFRKALF	9	Unmodified						0	0	0			REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	REV__ENST00000576149.5_1_17:503295-579448:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.770937	1027.52732	0.92416	0.00047573	5.5938	0.0028795	6.5179	0.0033552	514.7738121329962	29.811	0.1689	29.803	29.731	29.9	-0.0070648	1224	46	0.883646	0.027608931	0.88212657	358.68085		11.206726	-0.0039724	0.00036281	0.0010806	NaN	12.049	167	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16173	+		1665	9817	940	959							0.014658376365787262
CGSGTSYT	8	Unmodified	_CGSGTSYT_					0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.2926953842001	1	775.292695	774.285419	2.0064	0.0015555	0.083733	6.4918E-05	2.0901	0.0016204	775.2927411522252	26.239	0.14479	26.228	26.107	26.252	-0.011137	627	88	1.24593	0.05224204	1.2444105	253.96371	0	10.648743						208	7	2	NaN	NaN	NaN	0.84727	1	4339	4339		1.2418	0.84618	1	24017	+		1666	12053	941	960	1292	1292					-0.11075237510203806
CGSGTSYT	8	Unmodified						0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.292695	774.285419	1.8676	0.0014479	1.7576	0.0013626	3.6252	0.0028106	775.2935679381684	26.481	0.072388	26.481	26.481	26.553	0	636	67	1.2405256	0.039642334	1.2405256	252.86212		8.080505	0.12634	0.00082109	-0.0019425	NaN	1.2418	118	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7975.2	+		1667	12053	941	960							-0.11075237510203806
CGSGTSYT	8	Unmodified						0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.292695	774.285419	2.0064	0.0015555	0.083733	6.4918E-05	2.0901	0.0016204	775.2927411522252	26.239	0.14479	26.228	26.107	26.252	-0.011137	627	88	1.24593	0.05224204	1.2444105	253.96371		10.648743	-0.12634	-0.00047664	0.0019425	NaN	1.2418	208	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24017	+		1668	12053	941	960							-0.11075237510203806
CGTPATLY	8	Unmodified	_CGTPATLY_					0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	825.3811164610001	1	825.381116	824.37384	1.3844	0.0011426	4.5896	0.0037881	5.9739	0.0049307	825.384928312442	22.5	0.096495	22.486	22.462	22.559	-0.013731	477	61	1.3357477	0.035835147	1.3342283	271.98343	0	7.2967224						116	5	2	NaN	NaN	NaN	0.80071	1	4966	4966		9.1232	3.0329	1	10559	+		1669	13324	942	961	1293	1293					-0.04537197199726961
CGTPATLY	8	Unmodified						0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	825.381116	824.37384	1.9621	0.0016195	2.9404	0.0024269	4.9025	0.0040464	825.3830919492223	22.501	0.096325	22.501	22.453	22.549	0	480	58	1.3339561	0.034048796	1.3339561	271.61862		6.9329834	0.0071872	-0.00066464	-0.00013611	NaN	9.1232	119	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12047	+		1670	13324	942	961							-0.04537197199726961
CGTPATLY	8	Unmodified						0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	825.381116	824.37384	1.3844	0.0011426	4.5896	0.0037881	5.9739	0.0049307	825.384928312442	22.5	0.096495	22.486	22.462	22.559	-0.013731	477	61	1.3357477	0.035835147	1.3342283	271.98343		7.2967224	-0.0071872	0.00069655	0.00013611	NaN	9.1232	116	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10559	+		1671	13324	942	961							-0.04537197199726961
CGTTSCTL	8	Unmodified	_CGTTSCTL_					0	0	0			REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3168016447001	1	785.316802	784.309525	1.1561	0.00090792	0.15818	0.00012422	1.3143	0.0010321	785.3166247949574	41.377	0.16851	41.377	41.281	41.45	0	615	46	1.2531329	0.027004361	1.2531329	255.37509	0	5.5032043						133	8	2	NaN	NaN	NaN	0.8439	1	4551	4551		3.1533	0	1	9509.1	+		1672	10249	943	962	1294	1294					-0.09125720348174582
CGTTSCTL	8	Unmodified						0	0	0			REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.316802	784.309525	1.1561	0.00090792	0.15818	0.00012422	1.3143	0.0010321	785.3166247949574	41.377	0.16851	41.377	41.281	41.45	0	615	46	1.2531329	0.027004361	1.2531329	255.37509		5.5032043	0.0086429	-0.0007017	0.015175	NaN	3.1533	133	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9509.1	+		1673	10249	943	962							-0.09125720348174582
CGTTSCTL	8	Unmodified						0	0	0			REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	REV__VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	785.316802	784.309525	1.4727	0.0011565	1.7929	0.001408	3.2656	0.0025645	785.3186695166764	41.352	0.07225	41.36	41.312	41.384	0.0082588	663	31	1.2243022	0.018034816	1.2227827	249.49968		3.6752777	-0.0086429	0.00058206	-0.015175	NaN	3.1533	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4962.5	+		1674	10249	943	962							-0.09125720348174582
CGTYTCFPGS	10	Unmodified	_CGTYTCFPGS_					0	0	0		ENST00000263280.10_1_19:47228149-47228762:-|nuORF	ENST00000263280.10_1_19:47228149-47228762:-|nuORF	ENST00000263280.10_1_19:47228149-47228762:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.3910292203	1	1035.39103	1034.38375	1.0972	0.001136	-1.9178	-0.0019857	-0.82062	-0.00084966	1035.389259031121	30.777	0.096556	30.777	30.728	30.825	0	210	49	1.4944444	0.028395057	1.4944444	303.28238	0	5.7624817						153	5	3	NaN	NaN	NaN	0.73444	1	9948	9948		5.6942	0.2283	1	12752			1675	6315	944	963	1295	1295					-0.13206377256665291
CGVCGAGF	8	Unmodified	_CGVCGAGF_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.14090968305004	2	357.14091	712.267266	1.8535	0.00066197	2.7065	0.00096659	4.56	0.0016286	357.14197670823506	25.298	0.12062	25.298	25.274	25.395	0	1530	58	0.6949163	0.03533691	0.6949163	283.71768	0	14.427216						94	6	2	NaN	NaN	NaN	0.84876	1	3462	3462		0.39566	0	1	7560.4			1676	5937	945	964	1296	1296					-0.10037650965898592
CGVLSAGL	8	Unmodified	_CGVLSAGL_					0	0	0			REV__SLC27A4|p.V10Cfs*9|1|0.19|ENSG00000167114|chr9:128343156-128343156|G/-|frameshift_variant	REV__SLC27A4|p.V10Cfs*9|1|0.19|ENSG00000167114|chr9:128343156-128343156|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3756371526	1	719.375637	718.368361	1.5217	0.0010947	-0.62605	-0.00045036	0.89566	0.00064431	719.3750795049472	22.115	0.072397	22.115	22.067	22.139	0	585	46	1.2711272	0.026975632	1.2711272	259.45074	0	5.5059814						62	4	2	NaN	NaN	NaN	0.35933	1	3565	3565		38.608	7.8168	1	4380.7	+		1677	13316	946	965	1297	1297					-0.002088759915523042
CGVLSAGL	8	Unmodified						0	0	0			REV__SLC27A4|p.V10Cfs*9|1|0.19|ENSG00000167114|chr9:128343156-128343156|G/-|frameshift_variant	REV__SLC27A4|p.V10Cfs*9|1|0.19|ENSG00000167114|chr9:128343156-128343156|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.375637	718.368361	1.5217	0.0010947	-0.62605	-0.00045036	0.89566	0.00064431	719.3750795049472	22.115	0.072397	22.115	22.067	22.139	0	585	46	1.2711272	0.026975632	1.2711272	259.45074		5.5059814	0	0	0	NaN	38.608	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4380.7	+		1678	13316	946	965							-0.002088759915523042
CHCGADNC	8	Unmodified	_CHCGADNC_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;ENST00000528828.1_1_8:38133161-38137268:-|nuORF	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.62001545294993	2	411.620015	821.225478	1.7485	0.00071972	-2.8868	-0.0011883	-1.1383	-0.00046855	411.61899046425475	36.637	0.12024	36.639	36.591	36.711	0.0016747	1437	40	0.7524962	0.024107158	0.75097674	306.45795	0	9.817749						62	6	2	NaN	NaN	NaN	0.84945	1	4923	4923		0	0	1	3696.1			1679	3602	947	966	1298	1298					-0.1922857471674888
CHDRSHGRPD	10	Unmodified	_CHDRSHGRPD_					0	0	0			REV__ENST00000248054.9_2_19:16990151-16990553:+|nuORF	REV__ENST00000248054.9_2_19:16990151-16990553:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2572449639001	2	590.257245	1178.49994	2.0632	0.0012178	-2.1657	-0.0012783	-0.10244	-6.0469E-05	590.758261428932	23.079	0.24083	23.079	22.959	23.2	0	1194	55	0.902037	0.03308952	0.902037	365.52527	0	13.4086						282	11	4	NaN	NaN	NaN	0.70677	1	15769	15769		7.5876	0.7936	1	63166	+		1680	11502	948	967	1299	1299					-0.08217297641726873
CHESCAGC	8	Unmodified	_CHESCAGC_					0	0	0		nc|ENSG00000138759|Q86XX4-4|FRAS1;nc|ENSG00000138759|Q86XX4-6|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1;nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4-4|FRAS1	nc|ENSG00000138759|Q86XX4-4|FRAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.12239096639996	2	405.122391	808.230229	1.5132	0.00061304	-9.7816	-0.0039628	-8.2684	-0.0033497	405.11834482547556	36.613	0.096188	36.615	36.615	36.711	0.0016785	1461	52	0.7376554	0.031541824	0.73613596	300.4933	0	12.8489685						98	5	2	NaN	NaN	NaN	0.84876	1	4763	4763		0.39566	0	1	5713.1			1681	3188	949	968	1300	1300					-0.1815569057398534
CHILQSQFP	9	Unmodified	_CHILQSQFP_					0	0	0			REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5244266548	1	1072.52443	1071.51715	1.1297	0.0012117	-5.9007	-0.0063286	-4.7709	-0.0051169	1072.5199128547272	29.786	0.048244	29.779	29.731	29.779	-0.0070648	108	64	1.5546752	0.03714025	1.5531558	315.36172	0	7.5338135						84	3	2	NaN	NaN	NaN	0.29681	1	11325	11325		19.118	3.2964	1	12138	+		1682	11525	950	969	1301	1301					-0.015747700886549865
CHILQSQFP	9	Unmodified						0	0	0			REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1072.52443	1071.51715	1.7567	0.0018841	-6.7465	-0.0072358	-4.9898	-0.0053517	1072.5187918404745	29.763	0.048248	29.763	29.739	29.787	0	108	58	1.5546752	0.033599496	1.5546752	315.36172		6.8155823	-0.0080932	-0.00031256	0.00075972	NaN	19.118	84	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12605	+		1683	11525	950	969							-0.015747700886549865
CHILQSQFP	9	Unmodified						0	0	0			REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1072.52443	1071.51715	1.1297	0.0012117	-5.9007	-0.0063286	-4.7709	-0.0051169	1072.5199128547272	29.786	0.048244	29.779	29.731	29.779	-0.0070648	108	64	1.5546752	0.03714025	1.5531558	315.36172		7.5338135	0.0080932	0.00059461	-0.00075972	NaN	19.118	84	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12138	+		1684	11525	950	969							-0.015747700886549865
CHLQRQVYDI	10	Unmodified	_CHLQRQVYDI_					0	0	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8191467289502	2	637.819147	1273.62374	1.9182	0.0012234	-2.3742	-0.0015143	-0.456	-0.00029085	637.8179829179194	25.105	0.1206	25.093	24.996	25.117	-0.012011	1137	67	0.9369253	0.04033816	0.93540585	379.3345	0	16.331787						122	6	2	NaN	NaN	NaN	0.70677	1	17484	17484		7.5876	0.60324	1	11445	+		1685	9795	951	970	1302	1302					-0.0021263959411044198
CHLQRQVYDI	10	Unmodified						0	0	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.819147	1273.62374	1.8406	0.001174	1.1875	0.00075739	3.028	0.0019313	637.8199472454244	25.105	0.048262	25.105	25.081	25.129	0	1140	40	0.93509084	0.023847759	0.93509084	378.5918		9.655273	0.0061222	0.0022006	-0.0001575	NaN	7.5876	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5625.9	+		1686	9795	951	970							-0.0021263959411044198
CHLQRQVYDI	10	Unmodified						0	0	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.819147	1273.62374	1.9182	0.0012234	-2.3742	-0.0015143	-0.456	-0.00029085	637.8179829179194	25.105	0.1206	25.093	24.996	25.117	-0.012011	1137	67	0.9369253	0.04033816	0.93540585	379.3345		16.331787	-0.0061222	-0.0023427	0.0001575	NaN	7.5876	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11445	+		1687	9795	951	970							-0.0021263959411044198
CHTGYRLT	8	Unmodified	_CHTGYRLT_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.D389V|1|0.23|ENSG00000134569|chr11:46895901-46895901|T/A|missense_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.72926908915	2	475.729269	949.443985	1.6098	0.00076581	6.0917	0.002898	7.7015	0.0036638	475.73175567456985	17.021	0.21604	17.021	16.949	17.165	0	1347	73	0.8080346	0.0443874	0.8080346	328.34573	0	18.036865						228	10	2	NaN	NaN	NaN	0.80692	1	7064	7064		8.2903	0.74991	1	17524			1688	2881	952	971	1303	1303					-0.03275898811261868
CHYHCCHA	8	Unmodified	_CHYHCCHA_					0	0	0		ENST00000371253.6_2_6:46977002-46977047:-|nuORF	ENST00000371253.6_2_6:46977002-46977047:-|nuORF	ENST00000371253.6_2_6:46977002-46977047:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.3225724996	1	973.322572	972.315296	2.4589	0.0023933	0.88479	0.00086118	3.3437	0.0032545	973.3234048741031	11.404	0.19193	11.404	11.284	11.476	0	447	67	1.3536539	0.039376736	1.3536539	274.941	0	7.9978333						197	9	2	NaN	NaN	NaN	0.84876	1	7666	7666		0.39566	0	1	21508			1689	6657	953	972	1304	1304					-0.17196900317514974
CIALAGAG	8	Unmodified	_CIALAGAG_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021001	1	675.349422	674.342146	1.7731	0.0011974	4.711	0.0031815	6.484	0.004379	675.3525655673609	26.215	0.24133	26.215	26.167	26.408	0	756	127	1.1683017	0.07597327	1.1683017	238.75407	0	15.525879						401	11	2	NaN	NaN	NaN	0.84651	1	2715	2715		1.6704	0	1	35194	+		1690	9734	954	973	1305	1305					-0.008051451630194606
CIALAGAG	8	Unmodified						0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.7731	0.0011974	4.711	0.0031815	6.484	0.004379	675.3525655673609	26.215	0.24133	26.215	26.167	26.408	0	756	127	1.1683017	0.07597327	1.1683017	238.75407		15.525879	-0.15139	0.00042083	0.0034744	NaN	1.6704	401	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35194	+		1691	9734	954	973							-0.008051451630194606
CIALAGAG	8	Unmodified						0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	0.99692	0.00067327	2.5215	0.0017029	3.5184	0.0023761	675.3520452363064	26.529	0.048277	26.518	26.518	26.566	-0.010645	765	100	1.1628724	0.05970931	1.161353	237.64456		12.202179	0.15139	-0.0010578	-0.0034744	NaN	1.6704	134	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10652	+		1692	9734	954	973							-0.008051451630194606
CKERDLWSGVC	11	Unmodified	_CKERDLWSGVC_					0	0	0			REV__ENSG00000168878|ENST00000519937|SFTPB	REV__ENSG00000168878|ENST00000519937|SFTPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.53388539976663	3	432.533885	1294.57983	0.94289	0.00040783	0.37269	0.0001612	1.3156	0.00056903	432.5340487522385	21.97	0.1686	21.956	21.884	22.053	-0.013895	1449	46	0.74507743	0.027827978	0.743558	452.4088	0	16.897064						143	8	2	NaN	NaN	NaN	0.66717	1	17832	17832		4.5433	0	1	19432	+		1693	10525	955	974	1306	1306					-0.05567992082796991
CKGPGGAG	8	Unmodified	_CKGPGGAG_					0	0	0		ENST00000421538.1_1_22:46439505-46440174:-|nuORF	ENST00000421538.1_1_22:46439505-46440174:-|nuORF	ENST00000421538.1_1_22:46439505-46440174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.2977211826001	1	646.297721	645.290445	1.4418	0.00093186	7.8307	0.005061	9.2725	0.0059928	646.3023745369677	35.844	0.21687	35.844	35.795	36.012	0	732	61	1.1827712	0.036158323	1.1827712	241.92732	0	7.395935						221	10	2	NaN	NaN	NaN	0.84887	1	1928	1928		0.32989	0	1	20019			1694	6918	956	975	1307	1307					-0.04638888856925405
CKNNFYIFYFF	11	Unmodified	_CKNNFYIFYFF_					0	0	0		ENST00000553951.1_1_14:65544523-65568380:-|nuORF	ENST00000553951.1_1_14:65544523-65568380:-|nuORF	ENST00000553951.1_1_14:65544523-65568380:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3497483655999	2	753.349748	1504.68494	0.9682	0.00072939	1.033	0.00077821	2.0012	0.0015076	753.3508295029906	38.948	0.0481	38.948	38.9	38.948	0	1041	37	0.9955231	0.021933973	0.9955231	402.39444	0	8.865814						37	3	2	NaN	NaN	NaN	0.74794	1	20599	20599		4.3102	0.34164	1	2231.5			1695	7563	957	976	1308	1308					-0.047211276147436365
CKQPLGLE	8	Unmodified	_CKQPLGLE_					0	0	0		MUC5B|p.E3610K|1|0.16|ENSG00000117983|chr11:1247708-1247708|G/A|missense_variant	MUC5B|p.E3610K|1|0.16|ENSG00000117983|chr11:1247708-1247708|G/A|missense_variant	MUC5B|p.E3610K|1|0.16|ENSG00000117983|chr11:1247708-1247708|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4655147924	1	887.465515	886.458238	2.351	0.0020864	-3.4563	-0.0030674	-1.1053	-0.00098091	887.4622425547418	30.148	0.072403	30.142	30.118	30.19	-0.0064106	387	31	1.389409	0.017858505	1.3878895	282.5849	0	3.632141						40	4	2	NaN	NaN	NaN	0.82797	1	5769	5769		5.4659	0	1	2163.3			1696	7886	958	977	1309	1309					0.010467536170040148
CKRTPLYIDFK	11	Unmodified	_CKRTPLYIDFK_					0	0	0		ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3762974670999	2	692.376297	1382.73804	0.83796	0.00058018	-9.6464	-0.0066789	-8.8084	-0.0060988	692.3698476287252	30.269	0.14475	30.263	30.214	30.359	-0.0064106	1041	52	0.9955231	0.03107816	0.99400365	402.71774	0	12.5720215						245	7	4	NaN	NaN	NaN	0.50669	1	18984	18984		18.233	7.8733	1	33144			1697	4211	959	978	1310	1310					0.06198250167926744
CKVGTGAA	8	Unmodified	_CKVGTGAA_					0	0	0		CALB2|p.M271Cfs*60|1|0.29|ENSG00000172137|chr16:71389854-71389854|C/-|frameshift_variant	CALB2|p.M271Cfs*60|1|0.29|ENSG00000172137|chr16:71389854-71389854|C/-|frameshift_variant	CALB2|p.M271Cfs*60|1|0.29|ENSG00000172137|chr16:71389854-71389854|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615	1	706.355236	705.34796	0.41435	0.00029268	4.2466	0.0029996	4.6609	0.0032923	706.3583351155978	40.248	0.21646	40.248	40.224	40.44	0	681	52	1.2134778	0.030676961	1.2134778	247.7694	0	6.263672						153	10	2	NaN	NaN	NaN	0.84512	1	3316	3316		2.4615	1.2197	1	13823			1698	75	960	979	1311	1311					-0.016500466513662104
CKVHSPGKM	9	Unmodified	_CKVHSPGKM_					0	0	0			REV__nc|ENSG00000197721|Q2VPA4-2|CR1L	REV__nc|ENSG00000197721|Q2VPA4-2|CR1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.74914725150006	2	493.749147	985.483742	1.0712	0.00052888	-2.8512	-0.0014078	-1.78	-0.00087888	493.74762502652146	12.82	0.28827	12.82	12.724	13.012	0	1347	49	0.8080346	0.02956599	0.8080346	328.17438	0	12.007874						245	13	2	NaN	NaN	NaN	0.33629	1	8057	8057		16.584	1.1215	1	26420	+		1699	11158	961	980	1312	1312					-0.009580951321936482
CLAIVIFF	8	Unmodified	_CLAIVIFF_					0	0	0		ENST00000529484.5_1_11:117061404-117064733:+|nuORF;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2;ENST00000525065.1_1_11:117062460-117063438:+|nuORF	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.5215731083	1	925.521573	924.514297	2.0259	0.001875	-9.0586	-0.0083839	-7.0327	-0.0065089	925.5137419901208	56.061	0.024036	56.061	56.061	56.085	0	327	46	1.425088	0.026726604	1.425088	289.6591	0	5.432373						46	2	2	NaN	NaN	NaN	0.84651	1	6497	6497		1.6704	0	1	3807.2			1700	3686	962	981	1313	1313					0.049020065244803845
CLDRIMEEIFF	11	Unmodified	_CLDRIMEEIFF_					0	0	0			REV__nc|ENSG00000117308|Q14376-2|GALE	REV__nc|ENSG00000117308|Q14376-2|GALE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3385233647999	2	708.338523	1414.66249	1.1148	0.00078965	1.2034	0.00085241	2.3182	0.0016421	708.8420337676471	36.107	0.096424	36.108	36.012	36.108	0.0011024	1044	46	0.99369496	0.027427733	0.9921755	401.88837	0	11.092865						117	5	3	NaN	NaN	NaN	0.63477	1	19227	19227		11.739	1.3787	1	9371.4	+		1701	9244	963	982	1314	1314					-0.028250950746496528
CLEEGWDI	8	Unmodified	_CLEEGWDI_					0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000525697.1_1_11:9830438-9830537:-|nuORF	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.408059493	1	964.408059	963.400783	1.8266	0.0017616	-3.5593	-0.0034326	-1.7326	-0.001671	964.403521548429	23.682	0.072285	23.682	23.658	23.73	0	324	34	1.42687	0.019601583	1.42687	289.84943	0	3.9818115						67	4	2	NaN	NaN	NaN	0.76633	1	7417	7417		13.737	2.1886	1	4078.6			1702	2835	964	983	1315	1315					-0.08238133379222745
CLFLIYSPLQL	11	Unmodified	_CLFLIYSPLQL_					0	0	0			REV__ENST00000283122.7_1_5:89689765-89689855:-|nuORF	REV__ENST00000283122.7_1_5:89689765-89689855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3648671135501	2	655.364867	1308.71518	0.86771	0.00056867	5.7294	0.0037549	6.5971	0.0043235	655.3676777523212	30.656	0.26549	30.656	30.511	30.777	0	1104	43	0.9570911	0.025650322	0.9570911	387.38757	0	10.382111						230	12	3	NaN	NaN	NaN	0.69801	1	18914	18914		7.5876	1.3374	1	34002	+		1703	11609	965	984	1316	1316					0.07317231050478767
CLFQLVSFAS	10	Unmodified	_CLFQLVSFAS_					0	0	0			REV__ENST00000509676.1_1_4:2934766-2935650:-|nuORF	REV__ENST00000509676.1_1_4:2934766-2935650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7837099628501	2	557.78371	1113.55287	1.5369	0.00085725	2.2644	0.001263	3.8013	0.0021203	557.7849561027462	26.577	0.072374	26.577	26.505	26.577	0	1215	58	0.8891654	0.034948587	0.8891654	360.55243	0	14.171478						86	4	2	NaN	NaN	NaN	0.66626	1	13428	13428		10.36	0.61416	1	22406	+		1704	9063	966	985	1317	1317					0.0006326736836399505
CLGLHPVLRA	10	Unmodified	_CLGLHPVLRA_					0	0	0			REV__ENST00000414797.5_1_7:79083283-79084263:+|nuORF	REV__ENST00000414797.5_1_7:79083283-79084263:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.2111828917333	3	360.211183	1077.61172	2.2191	0.00079934	-11.005	-0.0039641	-8.7858	-0.0031647	360.2086723830777	18.676	0.095919	18.676	18.628	18.724	0	1422	43	0.7617651	0.02594322	0.7617651	463.52185	0	15.786041						124	5	3	NaN	NaN	NaN	0.66796	1	11871	11871		10.244	5.2269	1	19582	+		1705	12086	967	986	1318	1318					0.07601788453325753
CLGPKGGG	8	Unmodified	_CLGPKGGG_					0	0	0		nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3446713752002	1	688.344671	687.337395	1.4106	0.00097099	4.8794	0.0033587	6.29	0.0043297	688.3482006978004	29.593	0.096546	29.586	29.562	29.659	-0.0070667	735	49	1.1809633	0.028926611	1.1794438	241.25082	0	5.9092255						90	5	2	NaN	NaN	NaN	0.84887	1	2898	2898		0.32989	0	1	6087.1			1706	3426	968	987	1319	1319					-0.018780293057830022
CLGRDSSV	8	Unmodified	_CLGRDSSV_					0	0	0			REV__ENST00000472202.1_1_10:7830197-7841158:+|nuORF	REV__ENST00000472202.1_1_10:7830197-7841158:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.3930781308001	1	836.393078	835.385802	1.9792	0.0016554	4.6688	0.0039049	6.648	0.0055604	836.3970839684199	34.829	0.072315	34.828	34.78	34.853	-0.0006485	414	31	1.3733286	0.017875552	1.3718091	279.57516	0	3.6390076						49	4	2	NaN	NaN	NaN	0.82332	1	5076	5076		6.0903	0.62448	1	2774.6	+		1707	8152	969	988	1320	1320					-0.038475804565450744
CLGSGPTF	8	Unmodified	_CLGSGPTF_					0	0	0			REV__ENST00000588224.1_1_10:118427801-118429708:-|nuORF	REV__ENST00000588224.1_1_10:118427801-118429708:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.3549017104999	1	781.354902	780.347625	1.7005	0.0013287	-4.947	-0.0038653	-3.2465	-0.0025367	781.3512004919359	29.183	0.33784	29.175	29.103	29.441	-0.0077209	567	148	1.2819146	0.08812022	1.2803952	261.2633	0	17.959534						797	15	4	NaN	NaN	NaN	0.72043	1	4411	4411		17.78	4.0433	1	225190	+		1708	12898	970	989	1321	1321					-0.051334663712282236
CLHHPGHFDF	10	Unmodified	_CLHHPGHFDF_					0	0	0			REV__ENST00000302351.8_1_5:73925440-73925572:-|nuORF	REV__ENST00000302351.8_1_5:73925440-73925572:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.26655005245	2	605.26655	1208.51855	0.97804	0.00059197	-8.1843	-0.0049537	-7.2063	-0.0043617	605.7614772122977	24.502	0.36188	24.489	24.32	24.682	-0.012747	1197	94	0.9001988	0.056978285	0.8986794	364.67557	0	23.082245						569	16	4	NaN	NaN	NaN	0.59589	1	16011	16011		15.175	0.75036	1	80550	+		1709	11661	971	990	1322	1322					-0.07737135999900602
CLHVLDLPI	9	Unmodified	_CLHVLDLPI_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5703142149001	1	1022.57031	1021.56304	2.0498	0.002096	-7.7091	-0.0078831	-5.6593	-0.0057871	1022.562548322109	24.502	0.096405	24.502	24.454	24.55	0	189	103	1.5068626	0.060352206	1.5068626	305.85306	0	12.249908						219	5	3	NaN	NaN	NaN	0.53206	1	9442	9442		8.2903	2.2	1	21039	+		1710	10821	972	991	1323	1323					0.0531187509358233
CLIVLSLSTFH	11	Unmodified	_CLIVLSLSTFH_					0	0	0		ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8390165038	2	616.839017	1231.66348	1.3133	0.0008101	3.3992	0.0020967	4.7125	0.0029068	616.842397368779	16.949	0.047939	16.949	16.925	16.973	0	1110	37	0.95342636	0.02199316	0.95342636	386.15634	0	8.907654						62	3	2	NaN	NaN	NaN	0.76488	1	17322	17322		2.8895	0.71314	1	6427.4			1711	5433	973	992	1324	1324					0.05691487356580183
CLKSDLFV	8	Unmodified	_CLKSDLFV_					0	0	0		ENST00000298125.6_1_13:52334347-52334536:+|nuORF	ENST00000298125.6_1_13:52334347-52334536:+|nuORF	ENST00000298125.6_1_13:52334347-52334536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.74659617505	2	462.746596	923.478639	0.95267	0.00044085	3.2943	0.0015244	4.247	0.0019653	462.7479503335542	13.805	0.095858	13.794	13.77	13.866	-0.010673	1416	52	0.76547134	0.031500757	0.7639519	311.17487	0	12.805511						95	5	2	NaN	NaN	NaN	0.84562	1	6347	6347		2.1763	0.73677	1	6993			1712	6405	974	993	1325	1325					0.013839242768312943
CLLCGGVM	8	Unmodified	_CLLCGGVM_					0	0	0			REV__ENSG00000184113|ENST00000618236|CLDN5	REV__ENSG00000184113|ENST00000618236|CLDN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3561640389001	1	795.356164	794.348888	1.9745	0.0015704	-4.7523	-0.0037798	-2.7778	-0.0022093	795.3543711425766	55.22	0.12028	55.22	55.172	55.292	0	519	82	1.310647	0.048452377	1.310647	267.0378	0	9.871918						303	6	4	NaN	NaN	NaN	0.83849	1	4673	4673		4.0537	0.48046	1	27139	+		1713	10912	975	994	1326	1326					-0.05651291598314856
CLLCGGVM	8	Unmodified						0	0	0			REV__ENSG00000184113|ENST00000618236|CLDN5	REV__ENSG00000184113|ENST00000618236|CLDN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.356164	794.348888	1.9745	0.0015704	-4.7523	-0.0037798	-2.7778	-0.0022093	795.3543711425766	55.22	0.12028	55.22	55.172	55.292	0	519	82	1.310647	0.048452377	1.310647	267.0378		9.871918	0.013422	-0.00020679	-0.0010343	NaN	4.0537	303	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27139	+		1714	10912	975	994							-0.05651291598314856
CLLCGGVM	8	Unmodified						0	0	0			REV__ENSG00000184113|ENST00000618236|CLDN5	REV__ENSG00000184113|ENST00000618236|CLDN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	795.356164	794.348888	-0.20947	-0.00016661	-3.962	-0.0031512	-4.1715	-0.0033178	795.3558324978854	55.194	0.1203	55.193	55.169	55.29	-0.0006218	513	85	1.3142352	0.050233483	1.3127158	267.76886		10.234833	-0.013422	0.00042178	0.0010343	NaN	4.0537	211	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20557	+		1715	10912	975	994							-0.05651291598314856
CLQGEGPF	8	Unmodified	_CLQGEGPF_					0	0	0		ENST00000345617.7_1_2:239971330-239971666:-|nuORF	ENST00000345617.7_1_2:239971330-239971666:-|nuORF	ENST00000345617.7_1_2:239971330-239971666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.3763654341002	1	850.376365	849.369089	1.457	0.001239	5.8318	0.0049593	7.2888	0.0061982	850.3814136944883	29.377	0.096512	29.377	29.353	29.449	0	372	52	1.3983358	0.030341625	1.3983358	284.59015	0	6.175171						111	5	2	NaN	NaN	NaN	0.82797	1	5372	5372		5.4659	1.0528	1	10966			1716	6556	976	995	1327	1327					-0.06162081342483816
CLQLLSVSSH	10	Unmodified	_CLQLLSVSSH_					0	0	0			REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.5612060916	1	1086.56121	1085.55393	1.5793	0.001716	7.4098	0.0080512	8.9891	0.0097672	1086.5690958181417	36.372	0.26493	36.374	36.229	36.494	0.0016747	69	88	1.5776473	0.05122924	1.5761279	319.96887	0	10.390015						416	12	3	NaN	NaN	NaN	0.20271	1	11894	11894		35.296	7.5077	1	84708	+		1717	12954	977	996	1328	1328					0.014574817372704274
CLRHYLPL	8	Unmodified	_CLRHYLPL_					0	0	0			REV__nc|ENSG00000196642|Q3YEC7-3|RABL6	REV__nc|ENSG00000196642|Q3YEC7-3|RABL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5553328527002	1	1014.55533	1013.54806	1.5899	0.001613	-10.238	-0.010387	-8.6478	-0.0087737	1014.543687276557	34.202	0.096531	34.201	34.177	34.274	-0.0012474	192	46	1.5050892	0.02660203	1.5035697	305.52527	0	5.400055						119	5	3	NaN	NaN	NaN	0.80692	1	8954	8954		8.2903	2.2	1	8788.6	+		1718	13210	978	997	1329	1329					0.04182428016258655
CLSALVLITD	10	Unmodified	_CLSALVLITD_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.29136781945	2	524.291368	1046.56818	1.6065	0.00084227	-10.487	-0.005498	-8.8801	-0.0046557	524.2844917951985	23.923	0.072388	23.91	23.91	23.982	-0.013048	1248	73	0.8689189	0.044233978	0.86739945	352.6182	0	17.950714						97	4	3	NaN	NaN	NaN	0.68669	1	10288	10288		8.962	2.7118	1	8344.4			1719	2372	979	998	1330	1330					0.04676134165538315
CLSALVLITD	10	Unmodified						0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.291368	1046.56818	1.4056	0.00073693	-7.1791	-0.0037639	-5.7735	-0.003027	524.7904244047434	23.899	0.072319	23.899	23.875	23.947	0	1251	37	0.8670771	0.022102654	0.8670771	351.87076		8.969513	-0.0054121	0.0016034	-0.00016117	NaN	8.962	49	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5121.6			1720	2372	979	998							0.04676134165538315
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7764162470002	2	572.776416	1143.53828	1.9562	0.0011205	-4.6508	-0.0026639	-2.6946	-0.0015434	572.77365457026	21.681	0.16864	21.681	21.633	21.802	0	1233	88	0.87812483	0.05341184	0.87812483	355.9614	0	21.651306						282	8	2	NaN	NaN	NaN	0.076968	1	14572	14572		42.995	3.536	1	106840	+		1721	12639	980	999	1331	1331					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7764162470002	2	572.776416	1143.53828	2.5075	0.0014363	-5.0977	-0.0029199	-2.5902	-0.0014836	572.773265257515	22.26	0.38567	22.26	22.163	22.549	0	1236	163	0.876284	0.09940827	0.876284	355.2152	0	40.29666						1700	17	4	NaN	NaN	NaN	0.054678	1	14573	14573		48.65	4.0118	1	1644600	+		1722	12639	980	999	1332	1332					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7764162470002	2	572.776416	1143.53828	1.792	0.0010264	-2.0633	-0.0011818	-0.27133	-0.00015541	572.7759783273585	22.067	0.096529	22.067	22.067	22.163	0	1233	64	0.87812483	0.038648307	0.87812483	355.96136	0	15.6666565						183	5	3	NaN	NaN	NaN	0.47586	1	14576	14576		19.336	0.21812	1	28068	+		1723	12639	980	999	1333	1333					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7764162470002	2	572.776416	1143.53828	0.89908	0.00051497	-2.7038	-0.0015487	-1.8047	-0.0010337	572.7754266722168	22.115	0.16867	22.101	22.005	22.173	-0.013731	1236	67	0.876284	0.040499628	0.8747646	355.21518	0	16.417145						282	8	4	NaN	NaN	NaN	0.61402	1	14093	14093		13.101	1.3623	1	33745	+		1724	12639	980	999	1334	1334					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified	_CLSPLPQGGSW_					0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7764162470002	2	572.776416	1143.53828	1.2083	0.00069211	-2.91	-0.0016668	-1.7017	-0.00097469	572.7745579323845	21.729	0.1204	21.715	21.643	21.764	-0.013897	1236	85	0.876284	0.051578403	0.8747646	355.21518	0	20.908081						219	6	3	NaN	NaN	NaN	0.15564	1	14094	14094		34.454	8.653	1	58631	+		1725	12639	980	999	1335	1335					-0.027748047797786057
CLSPLPQGGSW	11	Unmodified						0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.776416	1143.53828	1.9562	0.0011205	-4.6508	-0.0026639	-2.6946	-0.0015434	572.77365457026	21.681	0.16864	21.681	21.633	21.802	0	1233	88	0.87812483	0.05341184	0.87812483	355.9614		21.651306	-0.017093	-0.00094753	0.0016801	NaN	42.995	282	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106840	+		1726	12639	980	999							-0.027748047797786057
CLSPLPQGGSW	11	Unmodified						0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.776416	1143.53828	1.792	0.0010264	-2.0633	-0.0011818	-0.27133	-0.00015541	572.7759783273585	22.067	0.096529	22.067	22.067	22.163	0	1233	64	0.87812483	0.038648307	0.87812483	355.96136		15.6666565	-0.017078	0.00044138	0.0016801	NaN	19.336	183	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28068	+		1727	12639	980	999							-0.027748047797786057
CLSPLPQGGSW	11	Unmodified						0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.776416	1143.53828	1.2083	0.00069211	-2.91	-0.0016668	-1.7017	-0.00097469	572.7745579323845	21.729	0.1204	21.715	21.643	21.764	-0.013897	1236	85	0.876284	0.051578403	0.8747646	355.21518		20.908081	0.017093	0.0010466	-0.0016801	NaN	42.995	219	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58631	+		1728	12639	980	999							-0.027748047797786057
CLSPLPQGGSW	11	Unmodified						0	0	0			REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.776416	1143.53828	0.89908	0.00051497	-2.7038	-0.0015487	-1.8047	-0.0010337	572.7754266722168	22.115	0.16867	22.101	22.005	22.173	-0.013731	1236	67	0.876284	0.040499628	0.8747646	355.21518		16.417145	0.017078	-0.00029232	-0.0016801	NaN	19.336	282	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33745	+		1729	12639	980	999							-0.027748047797786057
CLTSLLLLAE	10	Unmodified	_CLTSLLLLAE_					0	0	0		BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.3070178836501	2	538.307018	1074.59948	1.5012	0.0008081	-8.483	-0.0045665	-6.9818	-0.0037584	538.3032652762367	36.229	0.16877	36.229	36.181	36.35	0	1248	70	0.8689189	0.04237026	0.8689189	352.49872	0	17.188568						226	8	3	NaN	NaN	NaN	0.47601	1	11761	11761		20.449	2.479	1	21534			1730	70	981	1000	1336	1336					0.06516707199648408
CLVILSTTRW	10	Unmodified	_CLVILSTTRW_					0	0	0		ENST00000474669.1_1_3:122439146-122439230:+|nuORF	ENST00000474669.1_1_3:122439146-122439230:+|nuORF	ENST00000474669.1_1_3:122439146-122439230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.88999792033337	3	397.889998	1190.64816	1.8288	0.00072765	2.0547	0.00081755	3.8835	0.0015452	397.89163151858617	20.839	0.072128	20.825	20.776	20.849	-0.014086	1449	28	0.74507743	0.016696751	0.743558	452.8248	0	10.1475525						46	4	2	NaN	NaN	NaN	0.76892	1	15560	15560		4.6175	1.6474	1	2585			1731	7171	982	1001	1337	1337					0.06046620559391158
CLWFFFVF	8	Unmodified	_CLWFFFVF_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|35|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7698743061001	2	554.769874	1107.5252	1.0139	0.00056246	1.3476	0.00074763	2.3615	0.0013101	554.7703909535161	32.78	0.24132	32.78	32.707	32.949	0	1266	97	0.85786515	0.05894679	0.85786515	347.88348	0	23.904236						454	11	2	NaN	NaN	NaN	0.81214	1	13164	13164		7.5902	0.60588	1	78535	+		1732	13043	983	1002	1338	1338					-0.024265911012207653
CLWVPDSG	8	Unmodified	_CLWVPDSG_					0	0	0		ENST00000376887.8_1_13:95725473-95726547:-|nuORF	ENST00000376887.8_1_13:95725473-95726547:-|nuORF	ENST00000376887.8_1_13:95725473-95726547:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.3920154983001	1	876.392015	875.384739	0.88843	0.00077862	6.1425	0.0053832	7.0309	0.0061619	876.3975414826303	31.549	0.1207	31.549	31.525	31.646	0	426	52	1.3661768	0.0303967	1.3661768	277.91348	0	6.1834106						93	6	2	NaN	NaN	NaN	0.81807	1	5735	5735		6.794	1.8843	1	5840.7			1733	6704	984	1003	1339	1339					-0.0579379482544482
CLWVPDSG	8	Unmodified						0	0	0		ENST00000376887.8_1_13:95725473-95726547:-|nuORF	ENST00000376887.8_1_13:95725473-95726547:-|nuORF	ENST00000376887.8_1_13:95725473-95726547:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	876.392015	875.384739	0.73367	0.00064298	5.7028	0.0049979	6.4365	0.0056409	876.3971463962221	31.572	0.1207	31.568	31.519	31.64	-0.0044155	426	40	1.3661768	0.023247004	1.3646574	277.91348		4.729004	0.0093306	-0.00018178	-0.00075972	NaN	6.794	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6265.7			1734	6704	984	1003							-0.0579379482544482
CLYIKHLRWE	10	Unmodified	_CLYIKHLRWE_					0	0	0			REV__ENSG00000244234|ENST00000463439|GMCL2	REV__ENSG00000244234|ENST00000463439|GMCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.24466366709987	3	454.244664	1359.71216	1.2383	0.00056248	0.458	0.00020805	1.6963	0.00077052	454.24444161962714	20.622	0.096411	20.608	20.559	20.656	-0.014088	1467	28	0.7339432	0.016707659	0.7324238	445.42303	0	10.139709						63	5	2	NaN	NaN	NaN	0.77024	1	18778	18778		1.2289	0.52073	1	5705.8	+		1735	11356	985	1004	1340	1340					0.04669400716306882
CMAMSSYS	8	Unmodified	_CMAMSSYS_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.3045223989001	1	879.304522	878.297246	-0.086925	-7.6433E-05	-4.0059	-0.0035224	-4.0929	-0.0035989	879.3009683402415	45.668	0.24005	45.679	45.584	45.824	0.011349	546	55	1.294491	0.032327414	1.2929716	263.3174	0	6.5758667						228	11	2	NaN	NaN	NaN	0.84876	1	5648	5648		0.39566	0	1	24232			1736	3151	986	1005	1341	1341					-0.14677080082879002
CMGQMEPD	8	Unmodified	_CMGQMEPD_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.65880626244996	2	455.658806	909.30306	1.2649	0.00057637	-2.1596	-0.00098404	-0.89469	-0.00040767	455.6581155845832	27.904	0.048311	27.895	27.846	27.895	-0.009552	1380	61	0.7876915	0.037009597	0.78617203	320.28085	0	15.04834						71	3	2	NaN	NaN	NaN	0.8439	1	6093	6093		3.1533	0.69183	1	4734.6			1737	1026	987	1006	1342	1342					-0.15521981571225751
CMMKYLKEGQ	10	Unmodified	_CMMKYLKEGQ_					0	0	0			REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF	REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.7876120975001	2	615.787612	1229.56067	1.2416	0.00076457	6.535	0.0040242	7.7766	0.0047887	615.7905917264874	25.298	0.072353	25.298	25.274	25.346	0	1197	76	0.9001988	0.04592049	0.9001988	364.60504	0	18.59903						107	4	2	NaN	NaN	NaN	0.76892	1	17246	17246		3.2116	0.32214	1	9559.1	+		1738	8473	988	1007	1343	1343					-0.04492664698045701
CMVCGCGW	8	Unmodified	_CMVCGCGW_					0	0	0			REV__ENST00000474783.2_2_11:31811484-31812594:-|nuORF	REV__ENST00000474783.2_2_11:31811484-31812594:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.2765335094001	1	858.276534	857.269257	0.77767	0.00066746	-0.74672	-0.00064089	0.030954	2.6567E-05	858.2767273204059	33.237	0.21718	33.235	33.138	33.355	-0.0024757	516	79	1.3124412	0.04665041	1.3109218	267.06964	0	9.49292						416	10	3	NaN	NaN	NaN	0.84876	1	5364	5364		0.39566	0	1	59003	+		1739	12351	989	1008	1344	1344					-0.16508681543962211
CNCNFPNSL	9	Unmodified	_CNCNFPNSL_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.20476953759993	2	506.20477	1010.39499	0.70087	0.00035478	-10.028	-0.0050763	-9.3274	-0.0047216	506.701131020322	32.055	0.12068	32.051	32.027	32.148	-0.0037613	1344	40	0.8098828	0.024023652	0.8083634	328.81335	0	9.753632						127	6	3	NaN	NaN	NaN	0.31737	1	8808	8808		17.799	3.7574	1	8635.7	+		1740	10919	990	1009	1345	1345					-0.10979555162543875
CNCNFPNSL	9	Unmodified						0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.20477	1010.39499	0.70087	0.00035478	-10.028	-0.0050763	-9.3274	-0.0047216	506.701131020322	32.055	0.12068	32.051	32.027	32.148	-0.0037613	1344	40	0.8098828	0.024023652	0.8083634	328.81335		9.753632	-0.014492	-7.3797E-05	-0.00075972	NaN	17.799	127	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8635.7	+		1741	10919	990	1009							-0.10979555162543875
CNDMQQSGSCP	11	Unmodified	_CNDMQQSGSCP_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2046405393502	2	585.204641	1168.39473	2.45	0.0014338	2.7858	0.0016303	5.2359	0.003064	585.2069215124848	13.613	0.16813	13.613	13.541	13.709	0	1251	43	0.8670771	0.0257864	0.8670771	351.3939	0	10.450256						250	8	4	NaN	NaN	NaN	0.55071	1	15417	15417		9.6116	0	1	34253			1742	2767	991	1010	1346	1346					-0.18273342944667093
CNKCCPCN	8	Unmodified	_CNKCCPCN_					0	0	0			REV__ADAM17|p.S519C|1|0.53|ENSG00000151694|chr2:9502266-9502266|T/A|missense_variant	REV__ADAM17|p.S519C|1|0.53|ENSG00000151694|chr2:9502266-9502266|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.2881608281999	1	884.288161	883.280884	1.0347	0.00091493	-1.0959	-0.00096909	-0.061242	-5.4155E-05	884.2858484427181	33.237	0.14481	33.235	33.162	33.307	-0.0024757	483	70	1.3321642	0.041208267	1.3306447	270.95706	0	8.381622						163	7	2	NaN	NaN	NaN	0.84727	1	5719	5719		1.2418	0	1	12244	+		1743	8124	992	1011	1347	1347					-0.16542484520641665
CNSYFRDQRQ	10	Unmodified	_CNSYFRDQRQ_					0	0	0			REV__ENSG00000212710|ENST00000391403|CTAGE1	REV__ENSG00000212710|ENST00000391403|CTAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.5315323288333	3	439.531532	1315.57277	1.7819	0.00078319	0.4357	0.0001915	2.2176	0.0009747	439.5324246257406	25.346	0.024118	25.346	25.346	25.371	0	1386	22	0.78399014	0.012956858	0.78399014	475.95642	0	7.866028						28	2	2	NaN	NaN	NaN	0.77513	1	19036	19036		0.63172	0.14095	1	1872.2	+		1744	11279	993	1012	1348	1348					-0.07239588639004069
CNSYFRDQRQ	10	Unmodified						0	0	0			REV__ENSG00000212710|ENST00000391403|CTAGE1	REV__ENSG00000212710|ENST00000391403|CTAGE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	439.531532	1315.57277	1.7819	0.00078319	0.4357	0.0001915	2.2176	0.0009747	439.5324246257406	25.346	0.024118	25.346	25.346	25.371	0	1386	22	0.78399014	0.012956858	0.78399014	475.95642		7.866028	0	0	0	NaN	0.63172	28	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1872.2	+		1745	11279	993	1012							-0.07239588639004069
CPCKNNLEWR	10	Unmodified	_CPCKNNLEWR_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|63|3|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|63|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.53047528799993	3	421.530475	1261.5696	1.5767	0.00066463	-0.49424	-0.00020834	1.0825	0.00045629	421.53062647028077	22.477	0.096272	22.477	22.429	22.525	0	1521	34	0.70049703	0.020458162	0.70049703	425.45703	0	12.425598						74	5	2	NaN	NaN	NaN	0.65442	1	18027	18027		6.1406	0.44341	1	6041.3	+		1746	13040	994	1013	1349	1349					-0.05072555017363811
CPCKNNLEWR	10	Unmodified						0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|63|3|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|63|3|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	421.530475	1261.5696	1.5767	0.00066463	-0.49424	-0.00020834	1.0825	0.00045629	421.53062647028077	22.477	0.096272	22.477	22.429	22.525	0	1521	34	0.70049703	0.020458162	0.70049703	425.45703		12.425598	-0.02908	0.00070573	-0.0001702	NaN	6.1406	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6041.3	+		1747	13040	994	1013							-0.05072555017363811
CPEGLCLP	8	Unmodified	_CPEGLCLP_					0	0	0		ENST00000433688.2_2_11:63529859-63530528:-|nuORF	ENST00000433688.2_2_11:63529859-63530528:-|nuORF	ENST00000433688.2_2_11:63529859-63530528:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.19059952985	2	416.1906	830.366646	1.1619	0.00048357	1.9855	0.00082633	3.1473	0.0013099	416.1912617333036	35.844	0.096485	35.844	35.82	35.916	0	1455	37	0.7413668	0.02226597	0.7413668	301.87088	0	9.066315						79	5	2	NaN	NaN	NaN	0.84207	1	5139	5139		3.5732	0.41988	1	6986.4			1748	6983	995	1014	1350	1350					-0.05532253071817195
CPESRHLLDWG	11	Unmodified	_CPESRHLLDWG_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.2082781608	3	438.208278	1311.60301	1.5451	0.00067708	3.8042	0.001667	5.3493	0.0023441	438.2098947277879	19.972	0.07214	19.972	19.948	20.021	0	1470	28	0.7320868	0.016707659	0.7320868	444.46008	0	10.143433						43	4	2	NaN	NaN	NaN	0.74794	1	18976	18976		1.6806	0	1	2683.9			1749	7291	996	1015	1351	1351					-0.04033229973788366
CPFPIPPHHKP	11	Unmodified	_CPFPIPPHHKP_					0	0	0			REV__ENSG00000188816|ENST00000339992|HMX2	REV__ENSG00000188816|ENST00000339992|HMX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.89022082099996	3	423.890221	1268.64883	2.029	0.00086008	0.32719	0.00013869	2.3562	0.00099877	423.889357784808	20.381	0.024033	20.381	20.381	20.405	0	1506	19	0.70979416	0.011154771	0.70979416	431.0778	0	6.774597						20	2	2	NaN	NaN	NaN	0.77166	1	18209	18209		0.49077	0	1	1118.6	+		1750	11070	997	1016	1352	1352					0.025254599990830684
CPFPKNNSH	9	Unmodified	_CPFPKNNSH_					0	0	0			REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.24000095095	2	522.240001	1042.46545	2.1377	0.0011164	5.6541	0.0029528	7.7918	0.0040692	522.2430054379366	18.029	0.31183	18.029	17.909	18.221	0	1305	79	0.83389086	0.047982335	0.83389086	338.42062	0	19.47284						389	14	3	NaN	NaN	NaN	0.2961	1	10307	10307		19.164	2.5794	1	78116	+		1751	10817	998	1017	1353	1353					-0.05408513782549562
CPGPGPGG	8	Unmodified	_CPGPGPGG_					0	0	0			REV__ENSG00000160714|ENST00000292211|UBE2Q1	REV__ENSG00000160714|ENST00000292211|UBE2Q1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.2711720811002	1	641.271172	640.263896	1.3425	0.00086093	8.5539	0.0054854	9.8964	0.0063463	641.2762211255018	33.237	0.16892	33.235	33.186	33.355	-0.0024757	723	79	1.1881942	0.047000885	1.1866747	243.0761	0	9.615234						143	8	2	NaN	NaN	NaN	0.84876	1	1639	1639		0.39566	0	1	15529	+		1752	10210	999	1018	1354	1354					-0.07062577748251897
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2868221453002	1	643.286822	642.279546	1.7215	0.0011074	-0.81364	-0.0005234	0.90781	0.00058398	643.2860066428514	35.82	0.21684	35.82	35.771	35.988	0	1215	94	0.8891654	0.05701524	0.8891654	181.89008	0	11.663193						527	10	3	NaN	NaN	NaN	0.84876	1	1773	1773		0.39566	0	1	139050	+		1753	12271	1000	1019	1355	1355					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2868221453002	1	643.286822	642.279546	1.3853	0.00089116	7.3593	0.0047341	8.7446	0.0056253	643.2915108206737	35.771	0.16879	35.771	35.723	35.892	0	621	58	1.2495319	0.034223795	1.2495319	255.60756	0	7.000931						188	8	3	NaN	NaN	NaN	0.84945	1	1776	1776		0	0	1	16621	+		1754	12271	1000	1019	1356	1356					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453002	1	643.286822	642.279546	1.8088	0.0011636	-0.31619	-0.0002034	1.4926	0.00096016	643.2865529182874	35.818	0.24103	35.819	35.77	36.011	0.00052643	1215	94	0.8891654	0.0570091	0.88764596	181.89008	0	11.661942						536	11	3	NaN	NaN	NaN	0.84945	1	1679	1679		0	0	1	136000	+		1755	12271	1000	1019	1357	1357					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453002	1	643.286822	642.279546	2.0492	0.0013182	5.8258	0.0037477	7.875	0.0050659	643.2908122172993	26.456	0.16891	26.445	26.373	26.542	-0.011137	699	73	1.2026466	0.04337144	1.2011272	246.0166	0	8.872177						186	8	2	NaN	NaN	NaN	0.84945	1	1681	1681		0	0	1	12087	+		1756	12271	1000	1019	1358	1358					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453002	1	643.286822	642.279546	1.5328	0.00098603	7.9666	0.0051248	9.4994	0.0061108	643.2915595315483	35.77	0.16866	35.77	35.722	35.891	0.00053024	624	49	1.247731	0.028815389	1.2462115	255.23917	0	5.8945465						150	8	2	NaN	NaN	NaN	0.84945	1	1682	1682		0	0	1	15237	+		1757	12271	1000	1019	1359	1359					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453002	1	643.286822	642.279546	1.8623	0.001198	7.7213	0.004967	9.5836	0.006165	643.2915109979796	34.733	0.14458	34.732	34.684	34.828	-0.0006485	618	61	1.2513325	0.03601551	1.2498131	255.97592	0	7.3674164						151	7	2	NaN	NaN	NaN	0.84945	1	1683	1683		0	0	1	17358	+		1758	12271	1000	1019	1360	1360					-0.05590291231203537
CPGVPGGG	8	Unmodified	_CPGVPGGG_					0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453002	1	643.286822	642.279546	1.2954	0.00083328	8.302	0.0053406	9.5974	0.0061739	643.2922649340576	33.695	0.19308	33.694	33.645	33.838	-0.0018501	597	49	1.2639319	0.028787732	1.2624124	258.55328	0	5.8889008						163	9	2	NaN	NaN	NaN	0.84945	1	1684	1684		0	0	1	17071	+		1759	12271	1000	1019	1361	1361					-0.05590291231203537
CPGVPGGG	8	Unmodified						0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	643.286822	642.279546	1.7215	0.0011074	-0.81364	-0.0005234	0.90781	0.00058398	643.2860066428514	35.82	0.21684	35.82	35.771	35.988	0	1215	94	0.8891654	0.05701524	0.8891654	181.89008		11.663193	0.00050888	-0.00021769	0.00075972	NaN	0.39566	527	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139050	+		1760	12271	1000	1019							-0.05590291231203537
CPGVPGGG	8	Unmodified						0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	643.286822	642.279546	1.3853	0.00089116	7.3593	0.0047341	8.7446	0.0056253	643.2915108206737	35.771	0.16879	35.771	35.723	35.892	0	621	58	1.2495319	0.034223795	1.2495319	255.60756		7.000931	0.00050888	-0.00019428	0.0016602	NaN	0	188	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16621	+		1761	12271	1000	1019							-0.05590291231203537
CPGVPGGG	8	Unmodified						0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	643.286822	642.279546	1.8088	0.0011636	-0.31619	-0.0002034	1.4926	0.00096016	643.2865529182874	35.818	0.24103	35.819	35.77	36.011	0.00052643	1215	94	0.8891654	0.0570091	0.88764596	181.89008		11.661942	-0.00050888	0.00010231	-0.00075972	NaN	0.39566	536	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136000	+		1762	12271	1000	1019							-0.05590291231203537
CPGVPGGG	8	Unmodified						0	0	0			REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	643.286822	642.279546	1.5328	0.00098603	7.9666	0.0051248	9.4994	0.0061108	643.2915595315483	35.77	0.16866	35.77	35.722	35.891	0.00053024	624	49	1.247731	0.028815389	1.2462115	255.23917		5.8945465	-0.00050888	0.0001964	-0.0016602	NaN	0	150	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15237	+		1763	12271	1000	1019							-0.05590291231203537
CPICVSLPWGD	11	Unmodified	_CPICVSLPWGD_					0	0	0		nc|ENSG00000134758|Q8WVD3-2|RNF138;ENST00000502765.1_1_5:54825986-54826487:-|nuORF;ENSG00000134758|ENST00000261593|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.27265213755	2	595.272652	1188.53075	2.1468	0.0012779	4.3499	0.0025894	6.4967	0.0038673	595.2755400387144	17.594	0.095947	17.58	17.532	17.628	-0.013567	1215	37	0.8891654	0.022073984	0.88764596	360.2742	0	8.944						40	5	2	NaN	NaN	NaN	0.64343	1	15490	15490		11.17	2.2084	1	3038.3			1764	2892	1001	1020	1362	1362					-0.05597280371716806
CPPAPGCL	8	Unmodified	_CPPAPGCL_					0	0	0		ENST00000593685.5_2_19:40316427-40316523:-|nuORF	ENST00000593685.5_2_19:40316427-40316523:-|nuORF	ENST00000593685.5_2_19:40316427-40316523:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.3371431563002	1	757.337143	756.329867	2.0166	0.0015272	1.431	0.0010838	3.4476	0.002611	757.3380376359677	25.805	0.12066	25.805	25.757	25.877	0	594	55	1.265731	0.032382727	1.265731	258.1065	0	6.60347						117	6	2	NaN	NaN	NaN	0.81214	1	4170	4170		7.5902	0	1	10143			1765	7747	1002	1021	1363	1363					-0.058045048977078295
CPPAPGCL	8	Unmodified						0	0	0		ENST00000593685.5_2_19:40316427-40316523:-|nuORF	ENST00000593685.5_2_19:40316427-40316523:-|nuORF	ENST00000593685.5_2_19:40316427-40316523:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	757.337143	756.329867	2.5349	0.0019198	4.0604	0.0030751	6.5954	0.0049949	757.3393469145566	26.143	0.096525	26.131	26.107	26.204	-0.011137	579	55	1.2747238	0.032361984	1.2732043	259.94028		6.5992126	0.16325	0.0011629	0.0037367	NaN	7.5902	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4687.7			1766	7747	1002	1021							-0.058045048977078295
CPPASPSG	8	Unmodified	_CPPASPSG_					0	0	0		ENST00000494610.1_1_22:38690075-38690477:-|nuORF	ENST00000494610.1_1_22:38690075-38690477:-|nuORF	ENST00000494610.1_1_22:38690075-38690477:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3079515179002	1	715.307952	714.300675	1.4164	0.0010132	8.1311	0.0058162	9.5475	0.0068294	715.3131424906761	54.908	0.11993	54.908	54.884	55.004	0	549	88	1.292695	0.05210817	1.292695	263.881	0	10.636963						240	6	3	NaN	NaN	NaN	0.84692	1	3499	3499		1.4396	0	1	37508			1767	7282	1003	1022	1364	1364					-0.06790325922349894
CPPCAMAG	8	Unmodified	_CPPCAMAG_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.2779137179001	1	749.277914	748.270637	0.47622	0.00035682	4.1261	0.0030916	4.6024	0.0034484	749.2827833666365	44.278	0.2397	44.29	44.194	44.433	0.01165	744	64	1.1755381	0.03797245	1.1740186	239.7604	0	7.744766						387	11	4	NaN	NaN	NaN	0.84876	1	3937	3937		0.39566	0	1	38294			1768	828	1004	1023	1365	1365					-0.11356724183553979
CPPFPPPFL	9	Unmodified	_CPPFPPPFL_					0	0	0		ENST00000555222.5_1_12:57492796-57493045:-|nuORF	ENST00000555222.5_1_12:57492796-57493045:-|nuORF	ENST00000555222.5_1_12:57492796-57493045:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5117367035001	1	1014.51174	1013.50446	1.5179	0.0015399	4.2385	0.0043	5.7564	0.00584	1014.5163207672082	30.801	0.19305	30.801	30.704	30.897	0	198	85	1.5015416	0.049685955	1.5015416	304.80527	0	10.086029						227	9	3	NaN	NaN	NaN	0.48931	1	9125	9125		10.052	1.0896	1	21384			1769	7569	1005	1024	1366	1366					-0.0017518148089266106
CPRLLTHVKF	10	Unmodified	_CPRLLTHVKF_					0	0	0			REV__nc|ENSG00000242110|Q9UHK6-2|AMACR	REV__nc|ENSG00000242110|Q9UHK6-2|AMACR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3473430624	2	607.347343	1212.68013	1.7529	0.0010646	-6.3769	-0.003873	-4.6239	-0.0028083	607.3441517290871	24.019	0.048235	24.006	24.006	24.055	-0.012747	1134	25	0.9387595	0.014673173	0.93724006	380.28198	0	5.943939						39	3	2	NaN	NaN	NaN	0.74854	1	16132	16132		4.7291	0.76056	1	3299.7	+		1770	13243	1006	1025	1367	1367					0.08230033033169093
CPSGFSVI	8	Unmodified	_CPSGFSVI_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3862018389001	1	809.386202	808.378925	2.2331	0.0018074	1.6469	0.001333	3.88	0.0031404	809.3886143931408	23.682	0.21681	23.682	23.658	23.875	0	495	88	1.3249949	0.052013636	1.3249949	269.88147	0	10.594421						360	10	4	NaN	NaN	NaN	0.62311	1	4868	4868		23.85	4.5657	1	68607	+		1771	9152	1007	1026	1368	1368					-0.0329289333711813
CPSGFSVI	8	Unmodified	_CPSGFSVI_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3862018389001	1	809.386202	808.378925	2.0032	0.0016213	2.4932	0.002018	4.4964	0.0036393	809.388968943841	23.706	0.21686	23.693	23.645	23.861	-0.013048	492	103	1.3267875	0.060991406	1.325268	270.24658	0	12.423035						333	10	4	NaN	NaN	NaN	0.69631	1	4776	4776		19.285	2.8482	1	65020	+		1772	9152	1007	1026	1369	1369					-0.0329289333711813
CPSGFSVI	8	Unmodified						0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.386202	808.378925	2.2331	0.0018074	1.6469	0.001333	3.88	0.0031404	809.3886143931408	23.682	0.21681	23.682	23.658	23.875	0	495	88	1.3249949	0.052013636	1.3249949	269.88147		10.594421	-0.0053857	-0.00033526	-0.00013659	NaN	23.85	360	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68607	+		1773	9152	1007	1026							-0.0329289333711813
CPSGFSVI	8	Unmodified						0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.386202	808.378925	2.0032	0.0016213	2.4932	0.002018	4.4964	0.0036393	809.388968943841	23.706	0.21686	23.693	23.645	23.861	-0.013048	492	103	1.3267875	0.060991406	1.325268	270.24658		12.423035	0.0053857	0.00034971	0.00013659	NaN	23.85	333	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65020	+		1774	9152	1007	1026							-0.0329289333711813
CPSWSTYWTV	10	Unmodified	_CPSWSTYWTV_					0	0	0			REV__ENSG00000244509|ENST00000361441|APOBEC3C	REV__ENSG00000244509|ENST00000361441|APOBEC3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.51470818179996	3	410.514708	1228.5223	2.2365	0.0009181	2.0376	0.00083647	4.2741	0.0017546	410.51571410537207	15.676	0.072015	15.663	15.639	15.711	-0.012611	1458	31	0.7395112	0.018557012	0.73799175	449.28342	0	11.274139						53	4	2	NaN	NaN	NaN	0.76548	1	16502	16502		1.5256	0.29665	1	3804.5	+		1775	9446	1008	1027	1370	1370					-0.0828251101670503
CPSWSTYWTV	10	Unmodified						0	0	0			REV__ENSG00000244509|ENST00000361441|APOBEC3C	REV__ENSG00000244509|ENST00000361441|APOBEC3C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	410.514708	1228.5223	2.2365	0.0009181	2.0376	0.00083647	4.2741	0.0017546	410.51571410537207	15.676	0.072015	15.663	15.639	15.711	-0.012611	1458	31	0.7395112	0.018557012	0.73799175	449.28342		11.274139	-0.0073993	-0.00053966	-0.00075972	NaN	1.5256	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3804.5	+		1776	9446	1008	1027							-0.0828251101670503
CPTSAGEWGQH	11	Unmodified	_CPTSAGEWGQH_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.7431047459	2	586.743105	1171.47166	1.6813	0.00098652	7.1925	0.0042201	8.8738	0.0052066	587.2482245209601	27.688	0.072399	27.688	27.664	27.736	0	1233	52	0.87812483	0.03129351	0.87812483	355.8602	0	12.681671						113	4	3	NaN	NaN	NaN	0.77466	1	15523	15523		1.1768	0.1048	1	9062.9	+		1777	11430	1009	1028	1371	1371					-0.10722040341693173
CPTSAGEWGQH	11	Unmodified						0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	586.743105	1171.47166	1.6813	0.00098652	7.1925	0.0042201	8.8738	0.0052066	587.2482245209601	27.688	0.072399	27.688	27.664	27.736	0	1233	52	0.87812483	0.03129351	0.87812483	355.8602		12.681671	0.0051727	0.00085997	-0.0010808	NaN	1.1768	113	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9062.9	+		1778	11430	1009	1028							-0.10722040341693173
CPTSAGEWGQH	11	Unmodified						0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	586.743105	1171.47166	1.3149	0.00077149	5.5887	0.0032791	6.9035	0.0040506	587.2480139018879	27.687	0.072376	27.677	27.653	27.726	-0.009552	1227	43	0.88180584	0.02576971	0.8802864	357.35193		10.443146	-0.0051727	-0.0010221	0.0010808	NaN	1.1768	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5949.5	+		1779	11430	1009	1028							-0.10722040341693173
CPWKFLFK	8	Unmodified	_CPWKFLFK_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2;NOS2|p.T11S|1|0.48|ENSG00000007171|chr17:27798778-27798778|G/C|missense_variant	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	356.86149107253334	3	356.861491	1067.56264	1.9155	0.00068358	-1.6034	-0.00057218	0.31215	0.00011139	356.8607565931468	17.405	0.11995	17.405	17.381	17.501	0	1458	85	0.7395112	0.05199915	0.7395112	450.034	0	31.64441						226	6	3	NaN	NaN	NaN	0.80071	1	11453	11453		6.2502	1.2333	1	20687			1780	355	1010	1029	1372	1372					0.03156500164391218
CPYLPCPER	9	Unmodified	_CPYLPCPER_					0	0	0		ENST00000597254.1_1_19:6755269-6763810:-|nuORF	ENST00000597254.1_1_19:6755269-6763810:-|nuORF	ENST00000597254.1_1_19:6755269-6763810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.24643738705	2	539.246437	1076.47832	0.68233	0.00036795	5.32	0.0028688	6.0023	0.0032367	539.7503684425443	35.336	0.14463	35.336	35.287	35.432	-4.5776E-05	1287	52	0.8449601	0.031357765	0.84344065	342.7716	0	12.720825						219	7	4	NaN	NaN	NaN	0.20577	1	11503	11503		24.961	11.958	1	20580			1781	7757	1011	1030	1373	1373					-0.0568581871468723
CPYSVMMPK	9	Unmodified	_CPYSVMMPK_					0	0	0			REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2397664479001	2	528.239766	1054.46498	1.3141	0.00069417	-0.91749	-0.00048466	0.39663	0.00020951	528.2376350112506	24.188	0.072433	24.188	24.14	24.213	0	1272	64	0.854179	0.0387277	0.854179	346.6028	0	15.714661						118	4	2	NaN	NaN	NaN	0.51576	1	10823	10823		8.962	2.7118	1	10402	+		1782	12925	1012	1031	1374	1374					-0.06007392818264634
CPYSVMMPK	9	Unmodified						0	0	0			REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.239766	1054.46498	1.3141	0.00069417	-0.91749	-0.00048466	0.39663	0.00020951	528.2376350112506	24.188	0.072433	24.188	24.14	24.213	0	1272	64	0.854179	0.0387277	0.854179	346.6028		15.714661	-0.0055573	-0.00073287	0.0016814	NaN	8.962	118	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10402	+		1783	12925	1012	1031							-0.06007392818264634
CPYSVMMPK	9	Unmodified						0	0	0			REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	REV__ENST00000591956.1_1_17:74557657-74557777:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.239766	1054.46498	1.1742	0.00062024	0.49251	0.00026016	1.6667	0.0008804	528.2379316798433	24.212	0.096474	24.199	24.127	24.224	-0.012749	1275	61	0.85233563	0.036881566	0.8508162	345.85483		14.965546	0.0055573	0.00075677	-0.0016814	NaN	8.962	132	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11063	+		1784	12925	1012	1031							-0.06007392818264634
CQALATGG	8	Unmodified	_CQALATGG_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.3345006194	1	720.334501	719.327224	0.46768	0.00033688	8.2301	0.0059284	8.6978	0.0062653	720.3377949801525	31.38	0.19307	31.38	31.308	31.501	0	666	67	1.2224985	0.039676428	1.2224985	249.51884	0	8.09816						160	9	2	NaN	NaN	NaN	0.83211	1	3581	3581		4.9097	1.7564	1	11214	+		1785	10795	1013	1032	1375	1375					-0.043666370310234015
CQALATGG	8	Unmodified						0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	720.334501	719.327224	0.46768	0.00033688	8.2301	0.0059284	8.6978	0.0062653	720.3377949801525	31.38	0.19307	31.38	31.308	31.501	0	666	67	1.2224985	0.039676428	1.2224985	249.51884		8.09816	0.015125	0.0009359	0.0016616	NaN	4.9097	160	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11214	+		1786	10795	1013	1032							-0.043666370310234015
CQCRLLRLF	9	Unmodified	_CQCRLLRLF_					0	0	0			REV__ENSG00000171873|ENST00000379453|ADRA1D	REV__ENSG00000171873|ENST00000379453|ADRA1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.31244600005	2	576.312446	1150.61034	0.79425	0.00045774	-8.3891	-0.0048347	-7.5948	-0.004377	576.8087362418274	38.54	0.072067	38.54	38.516	38.588	0	1194	31	0.902037	0.01838106	0.902037	365.6278	0	7.4505005						47	4	2	NaN	NaN	NaN	0.16171	1	14838	14838		27.789	8.6252	1	3922.4	+		1787	10639	1014	1033	1376	1376					0.04105831092920198
CQCRLLRLF	9	Unmodified						0	0	0			REV__ENSG00000171873|ENST00000379453|ADRA1D	REV__ENSG00000171873|ENST00000379453|ADRA1D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.312446	1150.61034	0.79425	0.00045774	-8.3891	-0.0048347	-7.5948	-0.004377	576.8087362418274	38.54	0.072067	38.54	38.516	38.588	0	1194	31	0.902037	0.01838106	0.902037	365.6278		7.4505005	0.011122	0.00027569	-0.00015929	NaN	27.789	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3922.4	+		1788	10639	1014	1033							0.04105831092920198
CQECVNNNI	9	Unmodified	_CQECVNNNI_					0	0	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.71295871045	2	518.712959	1035.41136	0.78373	0.00040653	3.944	0.0020458	4.7278	0.0024524	519.2152660960977	32.055	0.14479	32.051	32.003	32.148	-0.0037613	1326	40	0.8209676	0.024008036	0.81944823	333.20554	0	9.744141						143	7	3	NaN	NaN	NaN	0.59509	1	9784	9784		5.6942	0.78442	1	9914.6	+		1789	9014	1015	1034	1377	1377					-0.10492473996441731
CQGHCPETPL	10	Unmodified	_CQGHCPETPL_					0	0	0		ENST00000488325.5_1_6:32780676-32780880:-|nuORF	ENST00000488325.5_1_6:32780676-32780880:-|nuORF	ENST00000488325.5_1_6:32780676-32780880:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7311514636001	2	542.731151	1083.44775	1.6569	0.00089923	-10.919	-0.0059261	-9.2623	-0.0050269	542.7254627825656	14.213	0.11977	14.201	14.177	14.297	-0.011218	1239	31	0.87444305	0.018410921	0.8729236	354.7031	0	7.468048						71	6	2	NaN	NaN	NaN	0.63397	1	11799	11799		12.57	0.52101	1	5852.5			1790	7248	1016	1035	1378	1378					-0.09063597099702747
CQGHCPETPL	10	Unmodified						0	0	0		ENST00000488325.5_1_6:32780676-32780880:-|nuORF	ENST00000488325.5_1_6:32780676-32780880:-|nuORF	ENST00000488325.5_1_6:32780676-32780880:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.731151	1083.44775	1.684	0.00091396	-10.3	-0.0055902	-8.6161	-0.0046762	542.7248127079669	14.237	0.096107	14.237	14.189	14.285	0	1242	34	0.87260187	0.020255327	0.87260187	353.95624		8.216217	0.017877	0.00046069	-0.00016088	NaN	12.57	80	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5292.1			1791	7248	1016	1035							-0.09063597099702747
CQGPPAQG	8	Unmodified	_CQGPPAQG_					0	0	0		ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522335.5_1_8:144462155-144464818:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.3297495925001	1	757.32975	756.322473	1.4401	0.0010906	5.5562	0.0042079	6.9963	0.0052985	757.3350601416347	40.631	0.072063	40.637	40.589	40.661	0.0067558	687	64	1.2098682	0.03790331	1.2083488	246.71504	0	7.7292023						94	4	2	NaN	NaN	NaN	0.84692	1	4092	4092		1.4396	0	1	6675.4			1792	7404	1017	1036	1379	1379					-0.06543521173784939
CQLGLPELL	9	Unmodified	_CQLGLPELL_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5386797355001	1	985.53868	984.531403	1.4334	0.0014126	7.6823	0.0075712	9.1156	0.0089838	985.5467564527468	28.266	0.072388	28.257	28.209	28.281	-0.0089779	225	76	1.4855686	0.04439783	1.4840492	301.6819	0	9.016083						120	4	2	NaN	NaN	NaN	0.10956	1	7868	7868		34.439	0.74048	1	14328	+		1793	10183	1018	1037	1380	1380					0.03851882339631629
CQLGLPELL	9	Unmodified						0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	985.53868	984.531403	2.1222	0.0020915	10.195	0.010048	12.317	0.012139	985.5505588257042	28.243	0.048264	28.243	28.219	28.267	0	237	67	1.4784646	0.039067984	1.4784646	300.23923		7.9337463	-0.0072215	0.0012032	-0.0027923	NaN	34.439	102	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8666.9	+		1794	10183	1018	1037							0.03851882339631629
CQLGLPELL	9	Unmodified						0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	985.53868	984.531403	1.4334	0.0014126	7.6823	0.0075712	9.1156	0.0089838	985.5467564527468	28.266	0.072388	28.257	28.209	28.281	-0.0089779	225	76	1.4855686	0.04439783	1.4840492	301.6819		9.016083	0.0072215	-0.0012734	0.0027923	NaN	34.439	120	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14328	+		1795	10183	1018	1037							0.03851882339631629
CQPGGGPP	8	Unmodified	_CQPGGGPP_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3082858689	1	712.308286	711.301009	0.54238	0.00038634	9.1174	0.0064944	9.6598	0.0068808	712.3163544429784	35.048	0.19303	35.048	34.975	35.168	0	735	73	1.1809633	0.043390036	1.1809633	241.09206	0	8.858017						336	9	3	NaN	NaN	NaN	0.84876	1	3447	3447		0.39566	0	1	42983			1796	4636	1019	1038	1381	1381					-0.06618906202504604
CQPGGGPP	8	Unmodified	_CQPGGGPP_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	712.3082858689	1	712.308286	711.301009	0.88792	0.00063247	8.7736	0.0062495	9.6615	0.006882	712.3164439232206	35.022	0.19305	35.022	34.974	35.167	-4.5776E-05	732	76	1.1827712	0.04519558	1.1812518	241.46117	0	9.226608						314	9	3	NaN	NaN	NaN	0.84692	1	3385	3385		1.4396	1.0439	1	43409			1797	4636	1019	1038	1382	1382					-0.06618906202504604
CQPRGHLW	8	Unmodified	_CQPRGHLW_					0	0	0			REV__ENST00000558282.5_1_15:85737264-85737420:+|nuORF	REV__ENST00000558282.5_1_15:85737264-85737420:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.74525350435005	2	498.745254	995.475954	1.8104	0.00090294	-5.9657	-0.0029754	-4.1553	-0.0020724	498.74243967008357	16.901	0.14385	16.901	16.854	16.997	0	1302	73	0.8357362	0.044315398	0.8357362	339.37817	0	17.995728						102	7	2	NaN	NaN	NaN	0.72043	1	8404	8404		17.78	4.7775	1	8329.3	+		1798	12774	1020	1039	1383	1383					-0.021964863374591914
CRASLHTDQ	9	Unmodified	_CRASLHTDQ_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4734537168	1	1030.47345	1029.46618	1.6285	0.0016781	2.1899	0.0022567	3.8184	0.0039348	1030.475432436733	28.774	0.072365	28.774	28.75	28.822	0	213	43	1.4926696	0.024850845	1.4926696	302.94122	0	5.0435486						89	4	2	NaN	NaN	NaN	0.51576	1	9744	9744		5.6942	0	1	6529	+		1799	9721	1021	1040	1384	1384					-0.0473771913350447
CRCYFQFCQL	10	Unmodified	_CRCYFQFCQL_					0	0	0		ENST00000421484.5_1_3:183558394-183560156:-|nuORF	ENST00000421484.5_1_3:183558394-183560156:-|nuORF	ENST00000421484.5_1_3:183558394-183560156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.7775787274501	2	655.777579	1309.5406	0.93296	0.00061182	-9.1047	-0.0059706	-8.1717	-0.0053588	655.7721617345744	24.743	0.21709	24.731	24.658	24.875	-0.012394	1128	46	0.9424274	0.027507722	0.94090796	381.44992	0	11.13382						270	10	3	NaN	NaN	NaN	0.65442	1	18085	18085		11.17	5.7045	1	35678			1800	6916	1022	1041	1385	1385					-0.10178415637983562
CRCYFQFCQL	10	Unmodified						0	0	0		ENST00000421484.5_1_3:183558394-183560156:-|nuORF	ENST00000421484.5_1_3:183558394-183560156:-|nuORF	ENST00000421484.5_1_3:183558394-183560156:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	655.777579	1309.5406	0.90476	0.00059332	-14.19	-0.0093052	-13.285	-0.0087119	656.2720736284797	24.381	0.14479	24.381	24.309	24.454	0	1146	37	0.93142134	0.022019207	0.93142134	376.9952		8.912323	-0.17463	-0.0050262	-0.0047433	NaN	11.17	119	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8457.8			1801	6916	1022	1041							-0.10178415637983562
CRFDGTGPR	9	Unmodified	_CRFDGTGPR_					0	0	0		ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.73762543750007	2	504.737625	1007.4607	1.7993	0.00090819	-5.0491	-0.0025485	-3.2498	-0.0016403	505.23506799086374	28.026	0.096514	28.026	28.001	28.098	0	1335	49	0.8154261	0.029553175	0.8154261	331.07687	0	11.999084						82	5	3	NaN	NaN	NaN	0.53317	1	8869	8869		8.2448	1.3816	1	5967.8			1802	6531	1023	1042	1386	1386					-0.04273397925305744
CRGRGPDRG	9	Unmodified	_CRGRGPDRG_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.2408666182	2	487.240867	972.46718	1.9004	0.00092594	0.425	0.00020708	2.3254	0.001133	487.2405681009131	16.371	0.19177	16.358	16.334	16.526	-0.012995	1335	37	0.8154261	0.02216971	0.81390667	331.23734	0	9.005615						150	9	2	NaN	NaN	NaN	0.49672	1	7522	7522		9.746	0	1	15694			1803	2851	1024	1043	1387	1387					-0.02015459973938505
CRGRGPDRG	9	Unmodified						0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	487.240867	972.46718	1.8648	0.00090859	-2.0607	-0.001004	-0.19591	-9.5456E-05	487.2398408063014	16.326	0.16797	16.326	16.278	16.446	0	1338	43	0.81357855	0.025867462	0.81357855	330.48685		10.507721	-0.015961	-0.0013605	-0.00016407	NaN	9.746	149	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13270			1804	2851	1024	1043							-0.02015459973938505
CRIERFLQM	9	Unmodified	_CRIERFLQM_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.2073325703	3	399.207333	1194.60017	1.6477	0.00065777	-11.293	-0.0045083	-9.6455	-0.0038506	399.20202613566244	17.57	0.16794	17.556	17.484	17.652	-0.013567	1494	58	0.7172283	0.035298526	0.71570885	435.88293	0	21.452057						327	8	4	NaN	NaN	NaN	0.51576	1	15663	15663		5.4499	0.72086	1	43139			1805	5217	1025	1044	1388	1388					0.010652233677092227
CRIERFLQM	9	Unmodified						0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	399.207333	1194.60017	1.5865	0.00063336	-13.079	-0.0052211	-11.492	-0.0045877	399.20173854334377	17.429	0.16782	17.429	17.405	17.573	0	1494	64	0.7172283	0.03900993	0.7172283	435.88293		23.707611	-0.063572	-0.00079565	0.00075972	NaN	5.4499	259	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41163			1806	5217	1025	1044							0.010652233677092227
CRKRCNRTRW	10	Unmodified	_CRKRCNRTRW_					0	0	0		ENST00000552870.1_1_12:120934252-120934327:+|nuORF	ENST00000552870.1_1_12:120934252-120934327:+|nuORF	ENST00000552870.1_1_12:120934252-120934327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.85640629	2	689.856406	1377.69826	1.613	0.0011128	-5.1159	-0.0035292	-3.5029	-0.0024165	690.855018705182	45.67	0.19209	45.67	45.598	45.79	0	1188	52	0.90571284	0.031249523	0.90571284	366.40018	0	12.641815						219	9	4	NaN	NaN	NaN	0.73444	1	19873	19873		5.6942	0	1	16298			1807	7556	1026	1045	1389	1389					0.024518447362424922
CRLEYFKV	8	Unmodified	_CRLEYFKV_					0	0	0			REV__ENST00000369162.6_1_6:101173569-101214481:-|nuORF	REV__ENST00000369162.6_1_6:101173569-101214481:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5499131238	1	1057.54991	1056.54264	0.93222	0.00098587	7.4482	0.0078768	8.3804	0.0088627	1057.558131318205	35.601	0.1447	35.602	35.553	35.698	0.00053024	90	112	1.5652816	0.065437675	1.5637622	317.57037	0	13.276245						279	7	2	NaN	NaN	NaN	0.76406	1	10720	10720		14.042	3.99	1	23747	+		1808	11877	1027	1046	1390	1390					0.016627044337838015
CRPAFKKHF	9	Unmodified	_CRPAFKKHF_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.5394109873333	3	378.539411	1132.5964	1.7823	0.00067465	-5.964	-0.0022576	-4.1817	-0.001583	378.53707206720554	22.79	0.12058	22.79	22.766	22.887	0	1470	73	0.7320868	0.044551373	0.7320868	445.19043	0	27.092194						216	6	3	NaN	NaN	NaN	0.66529	1	14191	14191		1.04	0.12123	1	23524	+		1809	9917	1028	1047	1391	1391					0.035409216561447465
CRPRPRVGLE	10	Unmodified	_CRPRPRVGLE_					0	0	0		ENST00000359139.7_1_22:50781764-50810449:+|nuORF	ENST00000359139.7_1_22:50781764-50810449:+|nuORF	ENST00000359139.7_1_22:50781764-50810449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8298488010001	2	591.829849	1181.64514	0.55461	0.00032823	-3.4788	-0.0020589	-2.9242	-0.0017306	591.8265362181668	33.189	0.096535	33.186	33.138	33.235	-0.0024796	1182	82	0.9093879	0.04959947	0.90786844	368.49268	0	20.098175						117	5	3	NaN	NaN	NaN	0.73444	1	15294	15294		5.6942	0.2283	1	14305			1810	6589	1029	1048	1392	1392					0.061587902252540516
CRQPYSYDF	9	Unmodified	_CRQPYSYDF_					0	0	0		ENST00000497706.5_1_6:31865631-31903710:+|nuORF;nc|ENSG00000166278|P06681-2|C2;nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2	ENST00000497706.5_1_6:31865631-31903710:+|nuORF	ENST00000497706.5_1_6:31865631-31903710:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.75039846175	2	589.750398	1177.48624	1.8595	0.0010966	6.6855	0.0039428	8.5449	0.0050394	589.7544495261103	17.309	0.095823	17.309	17.285	17.381	0	1236	34	0.876284	0.020248711	0.876284	355.0931	0	8.205292						78	5	2	NaN	NaN	NaN	0.66822	1	15728	15728		1.9246	0.22244	1	5553.1			1811	4465	1030	1049	1393	1393					-0.0953996819355325
CRRRCHTM	8	Unmodified	_CRRRCHTM_					0	0	0		nc|ENSG00000138796|Q16836-2|HADH	nc|ENSG00000138796|Q16836-2|HADH	nc|ENSG00000138796|Q16836-2|HADH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.74694730105	2	531.746947	1061.47934	0.62969	0.00033483	1.5205	0.00080853	2.1502	0.0011434	531.7469944744481	27.494	0.096539	27.484	27.46	27.557	-0.009552	1266	49	0.85786515	0.029492497	0.8563457	348.0689	0	11.966217						106	5	3	NaN	NaN	NaN	0.76406	1	10918	10918		14.042	2.4931	1	15472			1812	7947	1031	1050	1394	1394					-0.048938828267864665
CRRRCHTM	8	Unmodified						0	0	0		nc|ENSG00000138796|Q16836-2|HADH	nc|ENSG00000138796|Q16836-2|HADH	nc|ENSG00000138796|Q16836-2|HADH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.746947	1061.47934	1.5792	0.00083972	5.2293	0.0027807	6.8085	0.0036204	531.7478184418087	27.471	0.14484	27.471	27.422	27.567	0	1266	52	0.85786515	0.0313375	0.85786515	348.06888		12.714813	-0.006894	0.0023563	0.00075972	NaN	14.042	147	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17311			1813	7947	1031	1050							-0.048938828267864665
CRWPPAAWW	9	Unmodified	_CRWPPAAWW_					0	0	0		ENST00000246115.4_1_19:3178863-3179049:+|nuORF	ENST00000246115.4_1_19:3178863-3179049:+|nuORF	ENST00000246115.4_1_19:3178863-3179049:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.77655363275	2	586.776554	1171.53855	1.4413	0.00084571	-5.3779	-0.0031556	-3.9366	-0.0023099	586.7736239329727	19.298	0.12019	19.284	19.236	19.356	-0.014141	1071	121	0.977233	0.07318413	0.97571355	396.0236	0	29.657898						254	6	3	NaN	NaN	NaN	0.68748	1	14987	14987		0.27539	0	1	20223			1814	6271	1032	1051	1395	1395					-0.04035340269274457
CSCGCCWC	8	Unmodified	_CSCGCCWC_					0	0	0		ENST00000222584.7_1_7:21470186-21470375:+|nuORF	ENST00000222584.7_1_7:21470186-21470375:+|nuORF	ENST00000222584.7_1_7:21470186-21470375:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.1965686289	1	864.196569	863.189292	2.2439	0.0019392	-9.6752	-0.0083613	-7.4313	-0.0064221	864.1883015314312	11.596	0.14401	11.596	11.548	11.692	0	1122	58	0.9460945	0.034831822	0.9460945	192.50067	0	7.0871887						113	7	2	NaN	NaN	NaN	0.84945	1	5569	5569		0	0	1	6444.2			1815	6239	1033	1052	1396	1396					-0.2477749120947692
CSGKTGICC	9	Unmodified	_CSGKTGICC_					0	0	0			REV__ENST00000590168.5_1_17:74469085-74473795:-|nuORF	REV__ENST00000590168.5_1_17:74469085-74473795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.3470559156	1	871.347056	870.339779	1.6839	0.0014672	-4.6341	-0.0040379	-2.9502	-0.0025707	871.3437131920741	44.592	0.072159	44.592	44.544	44.616	0	603	31	1.2603331	0.017994285	1.2603331	256.4053	0	3.6607819						47	4	2	NaN	NaN	NaN	0.68263	1	5661	5661		0.69115	0.29548	1	2118.5	+		1816	9467	1034	1053	1397	1397					-0.10057684954654178
CSHCVCQD	8	Unmodified	_CSHCVCQD_					0	0	0		ENST00000526084.1_1_11:7693541-7694179:-|nuORF	ENST00000526084.1_1_11:7693541-7694179:-|nuORF	ENST00000526084.1_1_11:7693541-7694179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.2902693182	1	894.290269	893.282993	1.5137	0.0013537	3.5825	0.0032038	5.0962	0.0045574	894.2948829133911	35.143	0.096546	35.143	35.094	35.191	-4.5776E-05	390	37	1.3876231	0.021430135	1.3861036	282.18866	0	4.3580627						63	5	2	NaN	NaN	NaN	0.83211	1	5851	5851		4.9097	1.7564	1	4229.8			1817	7426	1035	1054	1398	1398					-0.1679173251117163
CSHDGGQRP	9	Unmodified	_CSHDGGQRP_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4002887737001	1	956.400289	955.393012	2.1823	0.0020871	-5.5519	-0.0053098	-3.3696	-0.0032227	956.395183874277	15.772	0.1916	15.759	15.687	15.879	-0.012611	387	40	1.389409	0.023217201	1.3878895	282.2731	0	4.7168274						164	9	2	NaN	NaN	NaN	0.31737	1	7065	7065		17.799	0.018654	1	11754	+		1818	8349	1036	1055	1399	1399					-0.08646847856118711
CSHFSFLI	8	Unmodified	_CSHFSFLI_					0	0	0			REV__ENST00000498289.5_1_1:169773308-169819597:+|nuORF	REV__ENST00000498289.5_1_1:169773308-169819597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4549501061002	1	953.45495	952.447674	1.2774	0.001218	7.816	0.0074522	9.0934	0.0086702	953.4614613019685	35.312	0.072479	35.312	35.287	35.36	-4.5776E-05	276	49	1.4553556	0.028461456	1.4538362	295.6838	0	5.782501						69	4	2	NaN	NaN	NaN	0.62311	1	7004	7004		23.85	4.5657	1	5831.7	+		1819	8346	1037	1056	1400	1400					-0.030452290374000768
CSLVLFYLNL	10	Unmodified	_CSLVLFYLNL_					0	0	0			REV__ATP9B|p.I165L|1|0.13|ENSG00000166377|chr18:79113289-79113289|A/T|missense_variant	REV__ATP9B|p.I165L|1|0.13|ENSG00000166377|chr18:79113289-79113289|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.55098223776673	3	395.550982	1183.63112	1.4218	0.0005624	0.97749	0.00038665	2.3993	0.00094905	395.55136606190507	22.019	0.21697	22.019	21.922	22.139	0	1458	34	0.7395112	0.020416021	0.7395112	449.4724	0	12.408783						85	10	2	NaN	NaN	NaN	0.68669	1	15974	15974		4.6175	0	1	9009	+		1820	8154	1038	1057	1401	1401					0.046646999536051226
CSNEADSD	8	Unmodified	_CSNEADSD_					0	0	0			REV__nc|ENSG00000140464|P29590-13|PML	REV__nc|ENSG00000140464|P29590-13|PML	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.2676028456999	1	840.267603	839.260326	0.98885	0.0008309	-3.272	-0.0027494	-2.2832	-0.0019185	840.2649060235242	33.383	0.096554	33.383	33.335	33.431	0	528	46	1.3052634	0.026920795	1.3052634	265.699	0	5.480011						81	5	2	NaN	NaN	NaN	0.84887	1	5257	5257		0.32989	0	1	5395.1	+		1821	13128	1039	1058	1402	1402					-0.16573337103454833
CSNEADSD	8	Unmodified						0	0	0			REV__nc|ENSG00000140464|P29590-13|PML	REV__nc|ENSG00000140464|P29590-13|PML	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	840.267603	839.260326	0.98885	0.0008309	-3.272	-0.0027494	-2.2832	-0.0019185	840.2649060235242	33.383	0.096554	33.383	33.335	33.431	0	528	46	1.3052634	0.026920795	1.3052634	265.699		5.480011	0.08637	-0.0013563	0.0016572	NaN	0.32989	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5395.1	+		1822	13128	1039	1058							-0.16573337103454833
CSNEADSD	8	Unmodified						0	0	0			REV__nc|ENSG00000140464|P29590-13|PML	REV__nc|ENSG00000140464|P29590-13|PML	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	840.267603	839.260326	1.5247	0.0012812	0.21642	0.00018185	1.7411	0.001463	840.270497038574	33.213	0.072411	33.21	33.162	33.235	-0.0024757	531	43	1.3034686	0.025124788	1.3019491	265.33362		5.1144104	-0.08637	0.0015749	-0.0016572	NaN	0.32989	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2649.6	+		1823	13128	1039	1058							-0.16573337103454833
CSPDDRDC	8	Unmodified	_CSPDDRDC_					0	0	0			REV__ENSG00000142619|ENST00000375460|PADI3	REV__ENSG00000142619|ENST00000375460|PADI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.6551094805499	2	455.655109	909.295666	1.2311	0.00056094	8.1215	0.0037006	9.3525	0.0042615	455.6587772355	27.446	0.048239	27.436	27.411	27.46	-0.010126	1365	61	0.7969414	0.03700155	0.79542196	324.04193	0	15.045074						80	3	3	NaN	NaN	NaN	0.83211	1	6094	6094		4.9097	0.94122	1	5203.5	+		1824	9847	1040	1059	1403	1403					-0.16260997847291492
CSSCSGAS	8	Unmodified	_CSSCSGAS_					0	0	0		ENST00000489617.5_1_1:205496841-205496988:+|nuORF	ENST00000489617.5_1_1:205496841-205496988:+|nuORF	ENST00000489617.5_1_1:205496841-205496988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.2229012595001	1	701.222901	700.215625	0.77847	0.00054588	-2.1002	-0.0014727	-1.3217	-0.00092682	701.2212064976459	28.942	0.12069	28.933	28.837	28.958	-0.0083485	693	79	1.2062578	0.046955585	1.2047384	246.3296	0	9.588776						162	6	2	NaN	NaN	NaN	0.84727	1	3158	3158		1.2418	0.84618	1	13340			1825	7258	1041	1060	1404	1404					-0.14647439450470756
CSSCSGAS	8	Unmodified						0	0	0		ENST00000489617.5_1_1:205496841-205496988:+|nuORF	ENST00000489617.5_1_1:205496841-205496988:+|nuORF	ENST00000489617.5_1_1:205496841-205496988:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	701.222901	700.215625	0.98577	0.00069125	-2.6394	-0.0018508	-1.6536	-0.0011595	701.2211703587967	28.894	0.072384	28.894	28.87	28.943	0	696	64	1.2044523	0.03791547	1.2044523	245.9609		7.7427063	-0.019592	-0.0002005	-0.00014303	NaN	1.2418	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9398.1			1826	7258	1041	1060							-0.14647439450470756
CSSGSHDNIQT	11	Unmodified	_CSSGSHDNIQT_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.4927432748999	3	383.492743	1147.4564	1.7407	0.00066753	-11.451	-0.0043912	-9.71	-0.0037237	383.48899975188493	21.464	0.096428	21.45	21.426	21.523	-0.014006	1530	31	0.6949163	0.018605411	0.69339687	422.52094	0	11.312439						93	5	3	NaN	NaN	NaN	0.76488	1	14213	14213		0.9877	0	1	7193.4			1827	1731	1042	1061	1405	1405					-0.11142951929559786
CSVILRFTQ	9	Unmodified	_CSVILRFTQ_					0	0	0			REV__ENST00000254322.2_1_19:14625625-14625751:-|nuORF	REV__ENST00000254322.2_1_19:14625625-14625751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7893266570001	2	533.789327	1065.5641	1.5981	0.00085306	-2.1723	-0.0011596	-0.57422	-0.00030651	534.2887245518228	25.66	0.072353	25.648	25.624	25.696	-0.011602	1242	67	0.87260187	0.04050398	0.8710824	354.03076	0	16.433228						144	4	3	NaN	NaN	NaN	0.44082	1	11109	11109		12.049	2.3027	1	13271	+		1828	11509	1043	1062	1406	1406					0.03394089462494776
CTCLYAVA	8	Unmodified	_CTCLYAVA_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000507805.5_1_5:94852607-94856520:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.19059952985	2	422.1906	842.366646	1.2142	0.00051261	-5.4776	-0.0023126	-4.2634	-0.0018	422.18855671814396	37.84	0.14433	37.844	37.772	37.916	0.0034218	1425	31	0.7599118	0.01853484	0.75839233	309.35046	0	7.5453186						100	7	2	NaN	NaN	NaN	0.84692	1	5161	5161		1.4396	0	1	7973.2			1829	5791	1044	1063	1407	1407					-0.06084253071821877
CTLTPAIK	8	Unmodified	_CTLTPAIK_					0	0	0			REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.7413138319	2	423.741314	845.468075	1.9866	0.0008418	6.117	0.002592	8.1036	0.0034338	423.7441659939055	18.245	0.11984	18.245	18.197	18.316	0	1509	34	0.70793515	0.02044928	0.70793515	288.17447	0	8.324158						88	6	2	NaN	NaN	NaN	0.78967	1	5334	5334		10.605	2.3147	1	9480.1	+		1830	12871	1045	1064	1408	1408					0.03915941622403807
CTLTPAIK	8	Unmodified	_CTLTPAIK_					0	0	0			REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.7413138319	2	423.741314	845.468075	1.8987	0.00080458	7.2409	0.0030683	9.1396	0.0038728	423.7440244425892	18.29	0.11999	18.276	18.228	18.348	-0.01395	1506	40	0.70979416	0.024167359	0.7082747	288.9312	0	9.8376465						106	6	3	NaN	NaN	NaN	0.78967	1	5200	5200		10.605	1.643	1	8856.5	+		1831	12871	1045	1064	1409	1409					0.03915941622403807
CTLTPAIK	8	Unmodified						0	0	0			REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	423.741314	845.468075	1.9866	0.0008418	6.117	0.002592	8.1036	0.0034338	423.7441659939055	18.245	0.11984	18.245	18.197	18.316	0	1509	34	0.70793515	0.02044928	0.70793515	288.17447		8.324158	-0.015505	-0.00051413	-0.0001698	NaN	10.605	88	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9480.1	+		1832	12871	1045	1064							0.03915941622403807
CTLTPAIK	8	Unmodified						0	0	0			REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	REV__ENST00000583167.5_1_17:45894121-45894334:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	423.741314	845.468075	1.8987	0.00080458	7.2409	0.0030683	9.1396	0.0038728	423.7440244425892	18.29	0.11999	18.276	18.228	18.348	-0.01395	1506	40	0.70979416	0.024167359	0.7082747	288.9312		9.8376465	0.015505	0.00043833	0.0001698	NaN	10.605	106	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8856.5	+		1833	12871	1045	1064							0.03915941622403807
CTMMFPAT	8	Unmodified	_CTMMFPAT_					0	0	0			REV__ENST00000406486.8_1_22:25421664-25423932:+|nuORF	REV__ENST00000406486.8_1_22:25421664-25423932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.3616433473002	1	901.361643	900.354367	0.48312	0.00043546	5.8715	0.0052923	6.3546	0.0057278	901.3668351411098	56.083	0.048054	56.082	56.058	56.106	-0.00056458	411	40	1.3751161	0.023234606	1.3735967	279.6119	0	4.724457						50	3	2	NaN	NaN	NaN	0.84727	1	5966	5966		1.2418	0	1	3687.9	+		1834	12049	1046	1065	1410	1410					-0.09979612806500882
CTPAWGTE	8	Unmodified	_CTPAWGTE_					0	0	0		AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense;nc|ENSG00000170085|Q8NDZ2-2|SIMC1	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	AluY_dup65734|chr11:44619481-44619789:+|1.083678068887855|0.0057506542606521|7.56|522.0|11|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.3556299920001	1	864.35563	863.348354	1.6428	0.00142	0.54482	0.00047092	2.1876	0.0018909	864.3560015826598	29.498	0.24138	29.498	29.449	29.691	0	423	52	1.3679651	0.030399919	1.3679651	278.33728	0	6.185425						245	11	3	NaN	NaN	NaN	0.77489	1	5571	5571		12.588	2.5363	1	23719			1835	27	1047	1066	1411	1411					-0.08878671722163745
CTPPAHFA	8	Unmodified	_CTPPAHFA_					0	0	0		ENST00000282120.6_1_2:85547375-85547630:-|nuORF	ENST00000282120.6_1_2:85547375-85547630:-|nuORF	ENST00000282120.6_1_2:85547375-85547630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.1945308148	2	422.194531	842.374509	1.326	0.00055984	6.6169	0.0027936	7.943	0.0033535	422.1972706164847	30.679	0.072397	30.673	30.625	30.698	-0.0057545	1392	28	0.780288	0.016662419	0.77876854	317.64526	0	6.783081						55	4	2	NaN	NaN	NaN	0.84692	1	5164	5164		1.4396	0.19772	1	4036.2			1836	6366	1048	1067	1412	1412					-0.05298357760034378
CTPPSSSM	8	Unmodified	_CTPPSSSM_					0	0	0		ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3168016447001	1	809.316802	808.309525	1.4997	0.0012137	3.3664	0.0027245	4.8661	0.0039382	809.3203945146183	22.018	0.19268	22.004	21.956	22.149	-0.013895	489	79	1.3285799	0.046610594	1.3270605	270.61206	0	9.4938965						416	9	4	NaN	NaN	NaN	0.82332	1	4766	4766		6.0903	0.62448	1	54755			1837	4837	1049	1068	1413	1413					-0.10229720348183946
CTVSFPGF	8	Unmodified	_CTVSFPGF_					0	0	0		nc|ENSG00000231782|Q6W349|LINC00575	nc|ENSG00000231782|Q6W349|LINC00575	nc|ENSG00000231782|Q6W349|LINC00575	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.3862018389002	1	857.386202	856.378925	0.94227	0.00080789	-3.8043	-0.0032617	-2.862	-0.0024538	857.3820263102009	30.414	0.048283	30.407	30.383	30.431	-0.0064106	489	58	1.3285799	0.034056187	1.3270605	270.3582	0	6.9302063						103	3	3	NaN	NaN	NaN	0.76633	1	5345	5345		13.737	4.6139	1	10686			1838	8043	1050	1069	1414	1414					-0.055008933371027524
CVEKEVVI	8	Unmodified	_CVEKEVVI_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4964805698002	1	918.496481	917.489204	1.3998	0.0012858	0.78464	0.00072069	2.1845	0.0020064	918.4975932214098	27.109	0.072388	27.109	27.084	27.157	0	339	79	1.4179583	0.0463531	1.4179583	288.24225	0	9.422668						163	4	2	NaN	NaN	NaN	0.29743	1	6372	6372		42.318	5.7311	1	28858	+		1839	12527	1051	1070	1415	1415					0.02715906931268819
CVFPNGHLYI	10	Unmodified	_CVFPNGHLYI_					0	0	0			REV__ENSG00000139211|ENST00000550413|AMIGO2	REV__ENSG00000139211|ENST00000550413|AMIGO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7893266570002	2	581.789327	1161.5641	1.9728	0.0011477	-10.899	-0.006341	-8.9264	-0.0051933	582.2841717262286	23.392	0.1448	23.379	23.331	23.476	-0.013296	1158	94	0.92408	0.05694753	0.9225606	374.5208	0	23.080322						280	7	4	NaN	NaN	NaN	0.67523	1	14685	14685		9.746	0	1	36631	+		1840	9759	1052	1071	1416	1416					-0.01021910537497206
CVGGYQYKTH	10	Unmodified	_CVGGYQYKTH_					0	0	0			REV__nc|ENSG00000065361|P21860-3|ERBB3	REV__nc|ENSG00000065361|P21860-3|ERBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.26621570145	2	578.266216	1154.51788	1.2954	0.00074909	-7.9502	-0.0045973	-6.6547	-0.0038482	578.261968339521	24.84	0.14476	24.827	24.779	24.924	-0.012392	1260	64	0.8615505	0.03867334	0.8600311	349.2032	0	15.675049						135	7	2	NaN	NaN	NaN	0.60686	1	14458	14458		14.425	6.1802	1	17596	+		1841	8537	1053	1072	1417	1417					-0.05319975439601876
CVGSGGKV	8	Unmodified	_CVGSGGKV_					0	0	0		ENST00000393784.7_1_5:172377864-172378200:+|nuORF	ENST00000393784.7_1_5:172377864-172378200:+|nuORF	ENST00000393784.7_1_5:172377864-172378200:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3552360615	1	706.355236	705.34796	0.89192	0.00063001	3.8471	0.0027174	4.739	0.0033474	706.35845378425	27.325	0.16894	27.315	27.242	27.411	-0.010124	744	61	1.1755381	0.036158323	1.1740186	240.0228	0	7.382843						135	8	2	NaN	NaN	NaN	0.84455	1	3251	3251		2.7852	1.5433	1	9855.2			1842	6771	1054	1073	1418	1418					-0.016500466513662104
CVHTSQLYPQ	10	Unmodified	_CVHTSQLYPQ_					0	0	0			REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.52197420666664	3	392.521974	1174.54409	1.1013	0.00043228	-6.5115	-0.0025559	-5.4102	-0.0021236	392.5191092998243	36.374	0.096428	36.374	36.326	36.422	0	1494	28	0.7172283	0.016722202	0.7172283	435.96774	0	10.164581						108	5	4	NaN	NaN	NaN	0.5917	1	15626	15626		8.9416	0	1	9464	+		1843	12058	1055	1074	1419	1419					-0.03619706268136724
CVISDMEVIE	10	Unmodified	_CVISDMEVIE_					0	0	0		nc|ENSG00000015592|Q9H169-3|STMN4;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2619500655	2	569.26195	1136.50935	2.0322	0.0011568	4.5923	0.0026142	6.6245	0.0037711	569.2648714564389	23.538	0.1688	23.538	23.417	23.586	0	1278	82	0.85049206	0.049744427	0.85049206	344.7854	0	20.166138						254	8	4	NaN	NaN	NaN	0.44258	1	14327	14327		21.835	4.036	1	47842			1844	445	1056	1075	1420	1420					-0.053447101911160644
CVKLAYDVHL	10	Unmodified	_CVKLAYDVHL_					0	0	0			REV__nc|ENSG00000105643|Q8TBH0-2|ARRDC2	REV__nc|ENSG00000105643|Q8TBH0-2|ARRDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.5425981984334	3	387.542598	1159.60597	1.5828	0.00061341	-4.9298	-0.0019105	-3.347	-0.0012971	387.54105363869417	16.758	0.095966	16.758	16.734	16.83	0	1497	34	0.71537006	0.020442665	0.71537006	434.9031	0	12.427948						71	5	2	NaN	NaN	NaN	0.65442	1	15130	15130		6.1406	1.8917	1	7108.8	+		1845	8967	1057	1076	1421	1421					0.03254645151037039
CVLGPGGA	8	Unmodified	_CVLGPGGA_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3337723379001	1	673.333772	672.326496	1.6745	0.0011275	2.3073	0.0015536	3.9819	0.0026811	673.3347473221554	25.684	0.12061	25.672	25.6	25.721	-0.0116	789	130	1.1483859	0.07781136	1.1468664	234.69807	0	15.902466						221	6	2	NaN	NaN	NaN	0.83849	1	2569	2569		4.0537	1.2685	1	17146			1846	5932	1058	1077	1422	1422					-0.022774316800678207
CVLGSILLL	9	Unmodified	_CVLGSILLL_					0	0	0		ENST00000467320.1_1_16:58550403-58550922:+|nuORF	ENST00000467320.1_1_16:58550403-58550922:+|nuORF	ENST00000467320.1_1_16:58550403-58550922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5692515824002	1	930.569252	929.561975	1.3504	0.0012566	0.022827	2.1242E-05	1.3732	0.0012779	930.5692483521807	35.675	0.16877	35.675	35.627	35.795	0	267	85	1.4606913	0.049791694	1.4606913	296.872	0	10.11969						218	8	3	NaN	NaN	NaN	0.062836	1	6609	6609		41.46	10.669	1	31298			1847	7122	1059	1078	1423	1423					0.09437660724688612
CVMWPCGP	8	Unmodified	_CVMWPCGP_					0	0	0		ENST00000376257.7_1_6:31127292-31129271:+|nuORF	ENST00000376257.7_1_6:31127292-31129271:+|nuORF	ENST00000376257.7_1_6:31127292-31129271:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.6793447393	2	446.679345	891.344137	-0.29935	-0.00013371	5.4884	0.0024516	5.1891	0.0023178	446.6811799032942	55.098	0.048019	55.097	55.073	55.121	-0.0006218	1407	28	0.77102906	0.016671479	0.7695096	313.59973	0	6.7807617						49	3	2	NaN	NaN	NaN	0.84876	1	5819	5819		0.39566	0	1	5091.7			1848	6698	1060	1079	1424	1424					-0.10588175741088435
CVPLCFAA	8	Unmodified	_CVPLCFAA_					0	0	0			REV__ENST00000587757.5_1_18:13612213-13612381:+|nuORF	REV__ENST00000587757.5_1_18:13612213-13612381:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.3840933489	1	823.384093	822.376817	1.1652	0.0009594	-10.343	-0.0085161	-9.1776	-0.0075567	823.3755554925227	27.759	0.19309	27.75	27.677	27.87	-0.009552	456	61	1.348284	0.03580463	1.3467646	274.54706	0	7.290802						167	9	2	NaN	NaN	NaN	0.81214	1	4931	4931		7.5902	1.4999	1	15196	+		1849	12895	1061	1080	1425	1425					-0.041476453465861596
CVPPQEAFPND	11	Unmodified	_CVPPQEAFPND_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;ENSG00000163946|ENST00000683822|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.7687881801501	2	608.768788	1215.52302	1.2016	0.00073153	-8.6699	-0.005278	-7.4683	-0.0045465	608.7638067255506	29.16	0.3137	29.16	29.087	29.401	0	1200	73	0.89836043	0.044105053	0.89836043	363.90714	0	17.866058						495	14	5	NaN	NaN	NaN	0.70497	1	16859	16859		7.1304	0.70044	1	104290			1850	4276	1062	1081	1426	1426					-0.076117163676372
CVRCCQNEPLI	11	Unmodified	_CVRCCQNEPLI_					0	0	0			REV__NELL1|p.S692Kfs*21|1|0.39|ENSG00000165973|chr11:21570855-21570856|-/A|frameshift_variant	REV__NELL1|p.S692Kfs*21|1|0.39|ENSG00000165973|chr11:21570855-21570856|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.2935929324001	2	639.293593	1276.57263	1.8275	0.0011683	-5.8304	-0.0037273	-4.0029	-0.002559	639.2889546338064	28.412	0.072384	28.412	28.363	28.436	0	1149	88	0.92958635	0.05321604	0.92958635	376.35385	0	21.545135						151	4	3	NaN	NaN	NaN	0.6875	1	18349	18349		8.2775	0.032722	1	12708	+		1851	10410	1063	1082	1427	1427					-0.054590479548323856
CVSCESGA	8	Unmodified	_CVSCESGA_					0	0	0		ENST00000587491.5_1_17:75206862-75207027:+|nuORF	ENST00000587491.5_1_17:75206862-75207027:+|nuORF	ENST00000587491.5_1_17:75206862-75207027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.2698514521	1	755.269851	754.262575	1.7952	0.0013559	5.1598	0.003897	6.955	0.0052529	755.2741270116541	28.194	0.24131	28.194	28.146	28.388	0	564	94	1.2837118	0.055755377	1.2837118	261.7859	0	11.370163						259	11	2	NaN	NaN	NaN	0.8439	1	4135	4135		3.1533	0	1	30222			1852	7707	1064	1083	1428	1428					-0.12438579899333035
CVVAACYF	8	Unmodified	_CVVAACYF_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.379007971	1	875.379008	874.371732	1.2174	0.0010657	-5.0322	-0.0044051	-3.8148	-0.0033394	875.3741041342463	29.231	0.1448	29.224	29.175	29.32	-0.0077209	429	52	1.3643885	0.030409694	1.362869	277.5547	0	6.186157						87	7	2	NaN	NaN	NaN	0.84651	1	5594	5594		1.6704	0	1	5426.1			1853	2651	1065	1084	1429	1429					-0.07047949209209037
CWLRVDNYFIW	11	Unmodified	_CWLRVDNYFIW_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.86609692155	2	757.866097	1513.71764	1.5808	0.001198	-10.354	-0.0078469	-8.7731	-0.0066489	757.85629414049	27.205	0.024105	27.205	27.205	27.229	0	1005	52	1.0174452	0.031027913	1.0174452	411.23312	0	12.540955						43	2	2	NaN	NaN	NaN	0.77883	1	20626	20626		0.44583	0.060735	1	2765.8			1854	785	1066	1085	1430	1430					-0.018669204918523974
CYACDSAF	8	Unmodified	_CYACDSAF_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;ENST00000491251.1_1_22:30418516-30421787:+|nuORF	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.3011515805	1	879.301152	878.293875	1.5382	0.0013525	-3.1042	-0.0027295	-1.566	-0.001377	879.299102892185	45.67	0.19212	45.67	45.622	45.814	0	546	46	1.294491	0.026941061	1.294491	263.3174	0	5.4801636						178	9	2	NaN	NaN	NaN	0.84876	1	5772	5772		0.39566	0	1	15324			1855	1226	1067	1086	1431	1431					-0.1501400686523766
CYCIFDDWS	9	Unmodified	_CYCIFDDWS_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2122602187001	2	576.21226	1150.40997	1.5769	0.00090863	-3.9144	-0.0022555	-2.3375	-0.0013469	576.2099987349112	20.261	0.16828	20.261	20.189	20.357	0	1245	49	0.87076044	0.029470205	0.87076044	352.95102	0	11.945343						182	8	4	NaN	NaN	NaN	0.36492	1	14811	14811		15.175	8.3122	1	16829	+		1856	9043	1068	1087	1432	1432					-0.15922108085192122
CYCIFDDWS	9	Unmodified						0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.21226	1150.40997	1.5769	0.00090863	-3.9144	-0.0022555	-2.3375	-0.0013469	576.2099987349112	20.261	0.16828	20.261	20.189	20.357	0	1245	49	0.87076044	0.029470205	0.87076044	352.95102		11.945343	0.019169	-0.00036879	0.0026014	NaN	15.175	182	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16829	+		1857	9043	1068	1087							-0.15922108085192122
CYIYKLMAL	9	Unmodified	_CYIYKLMAL_					0	0	0			REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3	REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2928562634	2	559.292856	1116.57116	2.7772	0.0015533	3.7503	0.0020975	6.5276	0.0036508	559.2935835444819	9.3447	0.047891	9.3375	9.3375	9.3854	-0.0071888	1404	40	0.77288127	0.024075806	0.7713618	313.3894	0	9.762299						34	3	2	NaN	NaN	NaN	0.68549	1	13145	13145		0.23014	0	1	1961.7	+		1858	9541	1069	1088	1433	1433					0.017536860186964986
CYLCMEVEI	9	Unmodified	_CYLCMEVEI_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.4617513224	1	1102.46175	1101.45447	0.93326	0.0010289	-2.5619	-0.0028244	-1.6286	-0.0017955	1102.4583980699429	35.505	0.1689	35.505	35.457	35.626	0.00052643	111	82	1.5529068	0.04773152	1.5513873	314.8941	0	9.678894						286	8	3	NaN	NaN	NaN	0.36492	1	12550	12550		15.175	1.1338	1	21958	+		1859	13114	1070	1089	1434	1434					-0.09219420263366374
CYMEDWSKLE	10	Unmodified	_CYMEDWSKLE_					0	0	0		ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.2703064138501	2	652.270306	1302.52606	2.0588	0.0013429	1.985	0.0012948	4.0438	0.0026377	652.2723772687278	18.412	0.1679	18.412	18.364	18.532	0	1167	70	0.91857195	0.04221946	0.91857195	371.81522	0	17.089386						270	8	4	NaN	NaN	NaN	0.75466	1	18818	18818		4.3102	0.38204	1	25171			1860	5266	1071	1090	1435	1435					-0.11310209305133867
CYYRCHSKCLN	11	Unmodified	_CYYRCHSKCLN_					0	0	0		nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54-4|DEF8	nc|ENSG00000140995|Q6ZN54-4|DEF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.86687011393343	3	463.86687	1388.57878	1.7942	0.00083228	-3.4404	-0.0015959	-1.6462	-0.00076361	463.8659644414212	25.467	0.048279	25.455	25.431	25.479	-0.012011	1371	28	0.79324204	0.016649783	0.7917226	481.31033	0	10.102509						57	3	3	NaN	NaN	NaN	0.77378	1	19033	19033		0.38034	0	1	3605.1			1861	3299	1072	1091	1436	1436					-0.09996529723298408
CYYRCHSKCLN	11	Unmodified						0	0	0		nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54-4|DEF8	nc|ENSG00000140995|Q6ZN54-4|DEF8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	463.86687	1388.57878	1.6422	0.00076177	-2.8996	-0.001345	-1.2574	-0.00058325	463.8659964023164	25.443	0.02413	25.443	25.443	25.467	0	1377	25	0.7895419	0.014800608	0.7895419	479.06522		8.980469	-0.0059119	0.00033721	-0.0010904	NaN	0.38034	28	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216.4			1862	3299	1072	1091							-0.09996529723298408
CYYRLQEFA	9	Unmodified	_CYYRLQEFA_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.7764162470002	2	596.776416	1191.53828	1.1226	0.00066994	4.7587	0.0028399	5.8813	0.0035098	596.781771182573	20.477	0.19238	20.477	20.405	20.597	0	1215	145	0.8891654	0.08820075	0.8891654	360.26376	0	35.73636						331	9	3	NaN	NaN	NaN	0.44082	1	16189	16189		12.049	3.7584	1	44284			1863	5649;5713	1073	1092	1437	1437					-0.04982804779774597
DAAAAFGLRD	10	Unmodified	_DAAAAFGLRD_					0	0	0		ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7512557415	2	503.751256	1005.48796	1.3216	0.00066578	1.3801	0.00069524	2.7018	0.001361	503.75101732728353	20.237	0.14431	20.222	20.198	20.343	-0.014143	1290	61	0.84311575	0.03689754	0.8415963	342.32837	0	14.981415						160	7	3	NaN	NaN	NaN	0.58645	1	8618	8618		15.822	0.64654	1	16212			1864	6044	1074	1093	1438	1438					-0.014565911132876863
DAAAEYDEL	9	Unmodified	_DAAAEYDEL_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4156472914	1	996.415647	995.408371	2.0826	0.0020752	0.48517	0.00048343	2.5678	0.0025586	996.4166077194177	22.621	0.14474	22.621	22.597	22.742	0	282	46	1.4517976	0.026686788	1.4517976	294.7794	0	5.4186096						127	7	3	NaN	NaN	NaN	0.030669	1	8388	8388		58.235	22.939	1	8872.5			1865	2801	1075	1094	1439	1439					-0.08951702577940068
DAAAEYDEL	9	Unmodified	_DAAAEYDEL_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4156472914	1	996.415647	995.408371	1.6829	0.0016769	-0.86058	-0.0008575	0.82231	0.00081936	996.4146481327546	22.621	0.16887	22.607	22.583	22.752	-0.01354	279	52	1.4535767	0.030248284	1.4520572	295.14062	0	6.141754						119	8	2	NaN	NaN	NaN	0.16171	1	8220	8220		27.789	9.8191	1	8973.6			1866	2801	1075	1094	1440	1440					-0.08951702577940068
DAAEIRLVSK	10	Unmodified	_DAAEIRLVSK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.316762828	2	551.316763	1100.61897	1.5456	0.00085212	-1.6092	-0.00088717	-0.063568	-3.5046E-05	551.3160098682979	16.734	0.16789	16.734	16.686	16.854	0	1224	43	0.883646	0.025761366	0.883646	358.36584	0	10.447601						216	8	4	NaN	NaN	NaN	0.054136	1	12878	12878		41.55	23.751	1	38789			1867	1986	1076	1095	1441	1441					0.07268799534745085
DAAEIRLVSK	10	Unmodified	_DAAEIRLVSK_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.316762828	2	551.316763	1100.61897	1.6535	0.00091161	-1.1364	-0.00062653	0.51709	0.00028508	551.3162299113427	16.754	0.16768	16.741	16.693	16.861	-0.013294	1224	43	0.883646	0.025758564	0.88212657	358.36584	0	10.446472						217	8	4	NaN	NaN	NaN	0.039356	1	12541	12541		72.358	29.363	1	40828			1868	1986	1076	1095	1442	1442					0.07268799534745085
DAAEPDVQR	9	Unmodified	_DAAEPDVQR_					0	0	0		ENSG00000104518|ENST00000262580|GSDMD	ENSG00000104518|ENST00000262580|GSDMD	ENSG00000104518|ENST00000262580|GSDMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7383453315	2	500.738345	999.462138	1.3445	0.00067324	-1.1692	-0.00058548	0.17527	8.7763E-05	500.73843128936824	13.036	0.072055	13.036	13.012	13.084	0	1362	43	0.79879075	0.025895417	0.79879075	324.3576	0	10.515137						70	4	2	NaN	NaN	NaN	0.31471	1	8560	8560		17.97	7.6095	1	5926.4			1869	1479	1077	1096	1443	1443					-0.037614853555623995
DAAEPDVQR	9	Unmodified	_DAAEPDVQR_					0	0	0		ENSG00000104518|ENST00000262580|GSDMD	ENSG00000104518|ENST00000262580|GSDMD	ENSG00000104518|ENST00000262580|GSDMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7383453315	2	500.738345	999.462138	1.0608	0.00053119	-0.89978	-0.00045055	0.16104	8.0639E-05	500.73772919386994	13.038	0.14378	13.028	13.004	13.148	-0.00947	1365	49	0.7969414	0.02959162	0.79542196	323.60663	0	12.015991						132	7	2	NaN	NaN	NaN	0.57723	1	8373	8373		6.4299	2.0168	1	9844.5			1870	1479	1077	1096	1444	1444					-0.037614853555623995
DAAHPTNVQR	10	Unmodified	_DAAHPTNVQR_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.77833615925	2	554.778336	1107.54212	2.1932	0.0012168	-1.6553	-0.00091835	0.5379	0.00029841	554.7777113522005	11.212	0.33566	11.212	11.116	11.452	0	1269	49	0.8560222	0.029489279	0.8560222	347.13608	0	11.958557						420	15	3	NaN	NaN	NaN	0.3469	1	13171	13171		31.198	17.156	1	80243			1871	4590	1078	1097	1445	1445					-0.00734998961729616
DAAHPTNVQR	10	Unmodified	_DAAHPTNVQR_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.77833615925	2	554.778336	1107.54212	1.4688	0.00081488	-1.103	-0.00061189	0.36588	0.00020298	554.7780579220117	11.19	0.33577	11.183	11.063	11.399	-0.0071888	1269	49	0.8560222	0.029489279	0.85450274	347.13608	0	11.958557						386	15	4	NaN	NaN	NaN	0.14759	1	12797	12797		47.424	31.962	1	74254			1872	4590	1078	1097	1446	1446					-0.00734998961729616
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.32036814945	2	611.320368	1220.62618	1.3343	0.00081571	-1.9521	-0.0011933	-0.61772	-0.00037762	611.3195563246271	14.093	0.12007	14.093	14.069	14.189	0	1170	37	0.91673553	0.022038221	0.91673553	371.33307	0	8.926819						144	6	3	NaN	NaN	NaN	0.53563	1	17001	17001		17.198	4.1956	1	18534			1873	4590	1079	1098	1447	1447					0.02469532135182817
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.8826709218333	3	407.882671	1220.62618	1.5563	0.00063477	-1.9117	-0.00077976	-0.35546	-0.00014498	407.88212374856414	14.093	0.096084	14.093	14.069	14.165	0	1455	73	0.7413668	0.044546545	0.7413668	450.4431	0	27.065796						201	5	4	NaN	NaN	NaN	0.054678	1	17002	17002		37.395	29.591	1	20619			1874	4590	1079	1098	1448	1448					0.02469532135182817
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.8826709218333	3	407.882671	1220.62618	1.1641	0.00047482	-1.5	-0.00061184	-0.33593	-0.00013702	407.8822483243011	14.093	0.16773	14.082	14.058	14.226	-0.010672	1458	79	0.7395112	0.048264027	0.73799175	449.31567	0	29.324463						202	8	2	NaN	NaN	NaN	0.21983	1	16315	16315		21.237	15.097	1	25038			1875	4590	1079	1098	1449	1449					0.02469532135182817
DAAHPTNVQRL	11	Unmodified	_DAAHPTNVQRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.32036814945	2	611.320368	1220.62618	0.88255	0.00053952	0.53834	0.0003291	1.4209	0.00086862	611.320914290069	14.093	0.11985	14.082	14.058	14.178	-0.010672	1170	40	0.91673553	0.023873508	0.9152161	371.33307	0	9.670197						133	6	3	NaN	NaN	NaN	0.032697	1	16316	16316		54.991	23.315	1	15818			1876	4590	1079	1098	1450	1450					0.02469532135182817
DAAIEEVEM	9	Oxidation (M)	_DAAIEEVEM(Oxidation (M))_		DAAIEEVEM(1)		DAAIEEVEM(55)	0	0	1		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.4346681740001	1	1022.43467	1021.42739	2.5213	0.0025778	2.2647	0.0023155	4.786	0.0048934	1022.4368184013948	19.588	0.096004	19.588	19.54	19.636	0	267	37	1.4606913	0.021339297	1.4606913	296.482	0	4.331299						90	5	2	NaN	NaN	NaN	0.032826	1	9418	9418		55.413	15.954	1	6497.7			1877	2220	1080	1099	1451	1451		258			-0.08246489278531044
DAAKDSILR	9	Unmodified	_DAAKDSILR_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.7747308378	2	494.774731	987.534909	1.97	0.00097469	-3.5774	-0.00177	-1.6074	-0.00079531	494.77321059911327	14.141	0.16811	14.141	14.045	14.213	0	1314	61	0.8283535	0.0369215	0.8283535	336.41705	0	14.994812						272	8	3	NaN	NaN	NaN	0.12104	1	8136	8136		32.778	8.3778	1	57358			1878	2571	1081	1100	1452	1452					0.040642684378553895
DAALDFKL	8	Unmodified	_DAALDFKL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.74236807690005	2	446.742368	891.470183	2.036	0.00090958	-4.1402	-0.0018496	-2.1041	-0.00094001	446.7407664176107	26.215	0.096506	26.204	26.18	26.276	-0.011137	1386	34	0.78399014	0.020360768	0.7824707	318.87073	0	8.2812805						53	5	2	NaN	NaN	NaN	0.65542	1	5830	5830		21.835	7.7934	1	4301.2			1879	2713	1082	1101	1453	1453					0.020106936318711632
DAALEFADF	9	Unmodified	_DAALEFADF_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4465534893	1	998.446553	997.439277	1.338	0.0013359	1.2872	0.0012852	2.6252	0.0026211	998.4496738789998	31.646	0.072428	31.646	31.646	31.718	0	261	40	1.4642475	0.02310896	1.4642475	297.299	0	4.6920166						57	4	2	NaN	NaN	NaN	0.18779	1	8466	8466		26.115	13.112	1	3966.3			1880	4900	1083	1102	1454	1454					-0.059545044730498375
DAALEFADF	9	Unmodified	_DAALEFADF_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4465534893	1	998.446553	997.439277	1.2241	0.0012222	0.98177	0.00098025	2.2059	0.0022024	998.447748582403	31.669	0.072372	31.664	31.64	31.712	-0.0044155	258	55	1.4660252	0.0319885	1.4645058	297.65997	0	6.4949036						70	4	2	NaN	NaN	NaN	0.47587	1	8289	8289		10.605	0.85897	1	4668.1			1881	4900	1083	1102	1455	1455					-0.059545044730498375
DAALYAGLV	9	Unmodified	_DAALYAGLV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.7423680769	2	446.742368	891.470183	1.5915	0.00071098	-2.767	-0.0012361	-1.1755	-0.00052516	446.7411836184501	26.191	0.072386	26.191	26.167	26.239	0	1389	34	0.7821392	0.020360768	0.7821392	318.1179	0	8.2812805						55	4	2	NaN	NaN	NaN	0.58547	1	5945	5945		6.0903	0.39618	1	5240.7			1882	1640	1084	1103	1456	1456					0.020106936318597946
DAAPGVDL	8	Unmodified	_DAAPGVDL_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;KRT14|p.E271K|1|0.14|ENSG00000186847|chr17:41583876-41583876|C/T|missense_variant;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;TPT1-KRT17|1|fusion	ENSG00000171346|ENST00000254043|KRT15;ENSG00000186847|ENST00000167586|KRT14;ENSG00000128422|ENST00000311208|KRT17;TPT1-KRT17|1|fusion	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.3726602646999	1	757.37266	756.365384	1.6732	0.0012672	0.32043	0.00024269	1.9936	0.0015099	757.3728612454563	22.501	0.14458	22.501	22.453	22.597	0	600	49	1.2621325	0.028793812	1.2621325	257.3725	0	5.871628						144	7	2	NaN	NaN	NaN	0.35353	1	4171	4171		38.918	12.186	1	15220		+	1883	187;206;176;13722	1085	1104	1457	1457					-0.022544278447298893
DAAPGVDL	8	Unmodified	_DAAPGVDL_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;KRT14|p.E271K|1|0.14|ENSG00000186847|chr17:41583876-41583876|C/T|missense_variant;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;TPT1-KRT17|1|fusion	ENSG00000171346|ENST00000254043|KRT15;ENSG00000186847|ENST00000167586|KRT14;ENSG00000128422|ENST00000311208|KRT17;TPT1-KRT17|1|fusion	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.3726602646999	1	757.37266	756.365384	1.4782	0.0011195	-0.48258	-0.00036549	0.9956	0.00075404	757.3718819665645	22.5	0.14469	22.486	22.438	22.583	-0.013731	600	61	1.2621325	0.03598845	1.2606131	257.3725	0	7.33873						143	7	2	NaN	NaN	NaN	0.528	1	4093	4093		29.598	7.472	1	15417		+	1884	187;206;176;13722	1085	1104	1458	1458					-0.022544278447298893
DAASGGLLAAF	11	Unmodified	_DAASGGLLAAF_					0	0	0		nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5047370702	1	992.504737	991.497461	1.5903	0.0015783	4.0714	0.0040409	5.6617	0.0056193	992.5081083350816	41.762	0.28856	41.762	41.666	41.955	0	243	88	1.4749115	0.051523328	1.4749115	299.48865	0	10.462097						614	13	3	NaN	NaN	NaN	0.19696	1	8264	8264		30.61	1.7145	1	70258			1885	4560	1086	1105	1459	1459					0.0013717717223471482
DACLAGGG	8	Unmodified	_DACLAGGG_					0	0	0			REV__ENST00000524249.5_1_2:46768823-46769105:-|nuORF	REV__ENST00000524249.5_1_2:46768823-46769105:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	332.1419639280501	2	332.141964	662.269375	1.6753	0.00055642	-0.32539	-0.00010808	1.3499	0.00044835	332.1419469490223	28.218	0.12071	28.209	28.185	28.305	-0.0089779	1521	43	0.70049703	0.026036322	0.6989776	286.40204	0	10.645081						80	6	2	NaN	NaN	NaN	0.84692	1	2289	2289		1.4396	0	1	6466.5	+		1886	12611	1087	1106	1460	1460					-0.07526898956439254
DADDAVYEL	9	Unmodified	_DADDAVYEL_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4;SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant;ENST00000556436.1_1_14:70234873-70235392:+|nuORF;ENST00000605204.1_1_1:29486580-29492463:-|nuORF;nc|ENSG00000100650|Q13243-2|SRSF5;ENST00000554465.5_1_14:70234873-70235638:+|nuORF;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4312973555999	1	1010.4313	1009.42402	2.3762	0.002401	-0.96747	-0.00097757	1.4088	0.0014235	1010.4304891950668	25.998	0.2655	25.998	25.901	26.167	0	261	91	1.4642475	0.053331137	1.4642475	297.2509	0	10.826538						530	12	4	NaN	NaN	NaN	0.021105	1	8940	8940		70.6	6.6415	1	124740			1887	2078	1088	1107	1461	1461					-0.08031416060907759
DADDAVYEL	9	Unmodified	_DADDAVYEL_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4;SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant;ENST00000556436.1_1_14:70234873-70235392:+|nuORF;ENST00000605204.1_1_1:29486580-29492463:-|nuORF;nc|ENSG00000100650|Q13243-2|SRSF5;ENST00000554465.5_1_14:70234873-70235638:+|nuORF;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4312973555999	1	1010.4313	1009.42402	2.5778	0.0026047	-0.37911	-0.00038306	2.1987	0.0022216	1010.4307161218906	25.998	0.362	25.987	25.914	26.276	-0.011137	258	112	1.4660252	0.06578565	1.4645058	297.6118	0	13.354889						641	16	4	NaN	NaN	NaN	0.036546	1	8770	8770		52.624	16.038	1	136410			1888	2078	1088	1107	1462	1462					-0.08031416060907759
DADLREQAL	9	Unmodified	_DADLREQAL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7618204278	2	515.76182	1029.50909	2.8437	0.0014666	-1.3788	-0.00071111	1.4649	0.00075553	515.7612817543433	18.221	0.31185	18.221	18.125	18.436	0	1323	97	0.8228144	0.05904883	0.8228144	333.98022	0	23.967896						585	14	4	NaN	NaN	NaN	0.0092442	1	9752	9752		93.929	43.967	1	302540			1889	5661	1089	1108	1463	1463					-0.00448625804438052
DADLREQAL	9	Unmodified	_DADLREQAL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7618204278	2	515.76182	1029.50909	2.3979	0.0012367	-0.56419	-0.00029099	1.8337	0.00094576	515.7617479577001	18.242	0.26401	18.228	18.18	18.444	-0.01395	1323	88	0.8228144	0.05354488	0.82129496	333.98022	0	21.733856						606	12	4	NaN	NaN	NaN	0.011693	1	9557	9557		87.778	29.543	1	316260			1890	5661	1089	1108	1464	1464					-0.00448625804438052
DADNDNCMC	9	Unmodified	_DADNDNCMC_					0	0	0		nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.2804924929	1	1000.28049	999.273216	2.0398	0.0020404	2.7715	0.0027722	4.8113	0.0048126	1001.2852313081715	59.54	0.096016	59.54	59.516	59.612	0	297	49	1.4428991	0.028476596	1.4428991	292.95712	0	5.7816772						81	5	2	NaN	NaN	NaN	0.68748	1	8541	8541		0.27539	0.27539	1	3837.2			1891	3832	1090	1109	1465	1465					-0.22644965307222265
DADPILISL	9	Unmodified	_DADPILISL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5298891882002	1	956.529889	955.522613	1.0816	0.0010346	0.84146	0.00080488	1.923	0.0018394	956.5309304473719	33.504	0.31363	33.504	33.431	33.745	0	231	148	1.4820169	0.087130904	1.4820169	301.0868	0	17.701538						649	14	4	NaN	NaN	NaN	0.0062755	1	7233	7233		99.986	34.314	1	186090			1892	4848	1091	1110	1466	1466					0.04307231974826209
DADPILISL	9	Unmodified	_DADPILISL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.0952	0.0010476	0.14337	0.00013714	1.2386	0.0011847	956.5300816449198	33.502	0.24133	33.501	33.428	33.67	-0.0018463	228	157	1.4837929	0.09248996	1.4822735	301.44757	0	18.790283						616	11	4	NaN	NaN	NaN	0.0023856	1	7092	7092		109.86	45.308	1	175010			1893	4848	1091	1110	1467	1467					0.04307231974826209
DADPNRCYNMT	11	Unmodified	_DADPNRCYNMT_					0	0	0			REV__CON__P06868	REV__CON__P06868	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.8412666029333	3	433.841267	1298.50197	0.93968	0.00040767	1.2222	0.00053023	2.1618	0.0009379	433.84222695745086	21.224	0.16842	21.21	21.186	21.354	-0.014004	1413	37	0.7673241	0.022232234	0.76580465	465.9021	0	13.498901						185	8	4	NaN	NaN	NaN	0.54514	1	17912	17912		9.0037	0	1	19883	+	+	1894	8262	1092	1111	1468	1468					-0.13534049738836984
DADPYNPVL	9	Unmodified	_DADPYNPVL_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;ENST00000548296.1_1_12:48090057-48091454:-|nuORF	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4731025908001	1	1003.4731	1002.46583	2.1342	0.0021416	-0.37599	-0.0003773	1.7582	0.0017643	1003.4727897341398	25.564	0.14472	25.564	25.515	25.66	0	339	49	1.4179583	0.028528094	1.4179583	287.88083	0	5.7919006						157	7	3	NaN	NaN	NaN	0.021751	1	8681	8681		69.782	35.343	1	13678			1895	321	1093	1112	1469	1469					-0.03530815581711977
DADPYNPVL	9	Unmodified	_DADPYNPVL_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3;ENST00000548296.1_1_12:48090057-48091454:-|nuORF	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4731025908001	1	1003.4731	1002.46583	2.1497	0.0021571	-0.14452	-0.00014502	2.0052	0.0020121	1003.4732042834108	25.563	0.16889	25.552	25.503	25.672	-0.011602	336	49	1.419741	0.028524995	1.4182216	288.24277	0	5.7912903						143	8	3	NaN	NaN	NaN	0.12866	1	8507	8507		31.675	6.7144	1	12723			1896	321	1093	1112	1470	1470					-0.03530815581711977
DADQIRAL	8	Unmodified	_DADQIRAL_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.2405238797	2	451.240524	900.466495	1.9218	0.0008672	-2.0185	-0.00091084	-0.096713	-4.3641E-05	451.2399336908518	18.026	0.12003	18.012	17.964	18.084	-0.013786	1386	52	0.78399014	0.031466663	0.7824707	318.82242	0	12.796417						98	6	2	NaN	NaN	NaN	0.79607	1	5973	5973		9.746	1.5012	1	6942.5			1897	3502	1094	1113	1471	1471					0.012280238579933211
DADQIRAL	8	Unmodified						0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	451.240524	900.466495	1.5827	0.00071417	-1.3859	-0.00062538	0.19676	8.8788E-05	451.2403591402406	18.005	0.071981	18.005	17.981	18.053	0	1386	49	0.78399014	0.029607654	0.78399014	318.82242		12.040405	-0.0035551	0.00028952	0.00075972	NaN	9.746	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5337			1898	3502	1094	1113							0.012280238579933211
DAEADVASL	9	Unmodified	_DAEADVASL_					0	0	0		CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1	CON__Q3SX28	CON__Q3SX28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.410167983	1	890.410168	889.402892	1.4081	0.0012538	-2.7524	-0.0024508	-1.3443	-0.001197	890.4076371761325	22.645	0.16881	22.631	22.607	22.776	-0.01354	417	70	1.3715409	0.04112494	1.3700215	278.93668	0	8.36377						232	8	3	NaN	NaN	NaN	0.094712	1	5805	5805		36.586	6.9881	1	22554		+	1899	217	1095	1114	1472	1472					-0.046233813697654114
DAEDYYIVL	9	Unmodified	_DAEDYYIVL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-13|CHEK2;CHEK2|p.T323Lfs*14|1|0.42|ENSG00000183765|chr22:28699869-28699879|AGCTTGCAGGT/-|frameshift_variant;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.5146330544999	1	1100.51463	1099.50736	1.2445	0.0013696	2.5579	0.002815	3.8024	0.0041846	1100.5154343527026	32.08	0.14479	32.08	32.056	32.201	0	66	49	1.579413	0.028257012	1.579413	320.27597	0	5.7299805						168	7	3	NaN	NaN	NaN	0.56671	1	12821	12821		6.8632	2.8947	1	9698.8			1900	108	1096	1115	1473	1473					-0.038416796130377406
DAEDYYIVL	9	Unmodified	_DAEDYYIVL_					0	0	0		ENST00000439346.5_1_22:29095780-29107983:-|nuORF;nc|ENSG00000183765|O96017-13|CHEK2;CHEK2|p.T323Lfs*14|1|0.42|ENSG00000183765|chr22:28699869-28699879|AGCTTGCAGGT/-|frameshift_variant;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	ENST00000439346.5_1_22:29095780-29107983:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.5146330544999	1	1100.51463	1099.50736	1.36	0.0014967	0.7299	0.00080327	2.0899	0.0023	1100.5151160933574	32.079	0.096535	32.075	32.051	32.148	-0.0037613	63	55	1.5811787	0.031789064	1.5796592	320.634	0	6.4462585						109	5	2	NaN	NaN	NaN	0.56671	1	12491	12491		6.8632	2.9351	1	8069.8			1901	108	1096	1115	1474	1474					-0.038416796130377406
DAEHGAWAL	9	Unmodified	_DAEHGAWAL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.22487381549996	2	485.224874	968.435195	1.6662	0.00080846	-2.3929	-0.0011611	-0.72673	-0.00035263	485.22390609925947	22.669	0.12063	22.655	22.631	22.752	-0.01354	1335	34	0.8154261	0.020323336	0.81390667	331.25656	0	8.256073						98	6	2	NaN	NaN	NaN	0.29681	1	7408	7408		19.118	0	1	10639			1902	3964	1097	1116	1475	1475					-0.050285491760973855
DAEHGAWAL	9	Unmodified						0	0	0		ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.224874	968.435195	1.9368	0.00093979	-2.8972	-0.0014058	-0.96041	-0.00046601	485.2234803822192	22.645	0.16886	22.645	22.621	22.79	0	1335	49	0.8154261	0.029556334	0.8154261	331.25656		12.006897	-0.0049872	-0.0002377	0.00075972	NaN	19.118	130	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11630			1903	3964	1097	1116							-0.050285491760973855
DAEPLEIIL	9	Unmodified	_DAEPLEIIL_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5561039387002	1	1012.5561	1011.54883	1.3911	0.0014085	-0.15549	-0.00015744	1.2356	0.0012511	1012.556425627031	35.094	0.12064	35.094	35.046	35.167	-4.5776E-05	234	91	1.4802408	0.053302884	1.4787214	300.48914	0	10.820496						323	6	3	NaN	NaN	NaN	0.021105	1	8880	8880		70.6	0	1	54043			1904	1198	1098	1117	1476	1476					0.04351501146300052
DAFAEWTEM	9	Unmodified	_DAFAEWTEM_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.4400879029	1	1099.44009	1098.43281	1.297	0.0014259	0.41325	0.00045434	1.7102	0.0018803	1099.4406816959454	30.728	0.16893	30.728	30.656	30.825	0	144	73	1.533442	0.042502284	1.533442	310.95767	0	8.618805						291	8	3	NaN	NaN	NaN	0.016254	1	12766	12766		76.739	50.624	1	37853			1905	2104	1099	1118	1477	1477					-0.11246765696068906
DAFAEWTEM	9	Unmodified	_DAFAEWTEM_					0	0	0		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.4400879029	1	1099.44009	1098.43281	1.587	0.0017448	-0.48188	-0.0005298	1.1051	0.001215	1099.4398064537377	30.727	0.12062	30.722	30.673	30.794	-0.0057545	144	64	1.533442	0.03717959	1.5319226	310.95767	0	7.539459						294	6	4	NaN	NaN	NaN	0.036546	1	12434	12434		52.624	16.038	1	37192			1906	2104	1099	1118	1478	1478					-0.11246765696068906
DAFAEWTEM	9	Oxidation (M)	_DAFAEWTEM(Oxidation (M))_		DAFAEWTEM(1)		DAFAEWTEM(110)	0	0	1		nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	nc|ENSG00000116729|Q5T9L3-3|WLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1115.4350025249998	1	1115.435	1114.42773	2.2952	0.0025602	0.13386	0.00014931	2.4291	0.0027095	1115.4342654336008	26.384	0.12068	26.384	26.336	26.456	0	132	85	1.5405227	0.049559712	1.5405227	312.33786	0	10.048126						195	6	3	NaN	NaN	NaN	0.0018626	1	13446	13446		111.43	74.847	1	28822			1907	2104	1099	1119	1479	1479		241			-0.12491069558700474
DAFDFNVAL	9	Unmodified	_DAFDFNVAL_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-3|NECAP2;ENST00000496239.5_1_1:16767256-16775723:+|nuORF;nc|ENSG00000157191|Q9NVZ3-2|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4781879687001	1	1011.47819	1010.47091	1.0817	0.0010941	3.6465	0.0036884	4.7282	0.0047825	1011.4824118119201	33.528	0.048244	33.528	33.504	33.552	0	216	43	1.4908947	0.024850845	1.4908947	302.6562	0	5.0448						58	3	2	NaN	NaN	NaN	0.18779	1	8995	8995		26.115	10.652	1	4462.5			1908	3948	1100	1120	1480	1480					-0.03390511719089773
DAFDFNVAL	9	Unmodified						0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-3|NECAP2;ENST00000496239.5_1_1:16767256-16775723:+|nuORF;nc|ENSG00000157191|Q9NVZ3-2|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1011.47819	1010.47091	1.3992	0.0014153	2.7539	0.0027855	4.1532	0.0042008	1011.4820531051824	33.527	0.072411	33.525	33.501	33.573	-0.0018501	219	40	1.4891195	0.023079515	1.4876001	302.2958		4.685211	-0.0016087	-0.00056914	-0.0016473	NaN	26.115	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4049.7			1909	3948	1100	1120							-0.03390511719089773
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.7423680769	2	470.742368	939.470183	1.7374	0.00081786	-2.8973	-0.0013639	-1.1599	-0.00054602	470.74091044505485	25.974	0.14481	25.974	25.95	26.094	0	1305	46	0.83389086	0.027683675	0.83389086	338.9038	0	11.250977						189	7	4	NaN	NaN	NaN	0.48912	1	6807	6807		31.675	2.0771	1	35404			1910	563	1101	1121	1481	1481					-0.001973063681475651
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4774596872	1	940.47746	939.470183	1.9085	0.0017949	0.48527	0.00045639	2.3938	0.0022513	940.478040962335	25.974	0.12067	25.974	25.95	26.07	0	303	64	1.4393384	0.037397385	1.4393384	292.4872	0	7.5994873						167	6	3	NaN	NaN	NaN	0.28883	1	6810	6810		42.995	16.88	1	16428			1911	563	1101	1121	1482	1482					-0.001973063681475651
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.7423680769	2	470.742368	939.470183	1.0319	0.00048577	0.050139	2.3602E-05	1.0821	0.00050937	470.7423466103512	25.998	0.12068	25.987	25.938	26.059	-0.011137	1305	49	0.83389086	0.029530823	0.8323714	338.9038	0	12.001678						186	6	4	NaN	NaN	NaN	0.54116	1	6671	6671		28.896	8.3401	1	39914			1912	563	1101	1121	1483	1483					-0.001973063681475651
DAFKDFVV	8	Unmodified	_DAFKDFVV_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4774596872	1	940.47746	939.470183	2.5038	0.0023548	0.93877	0.0008829	3.4426	0.0032377	940.4776361859592	25.998	0.096552	25.987	25.962	26.059	-0.011137	303	67	1.4393384	0.039171934	1.437819	292.48718	0	7.9601135						164	5	3	NaN	NaN	NaN	0.45636	1	6673	6673		33.425	11.59	1	17385			1913	563	1101	1121	1484	1484					-0.001973063681475651
DAFLKEPAL	9	Unmodified	_DAFLKEPAL_					0	0	0		ENSG00000092010|ENST00000206451|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.276575035	2	502.276575	1002.5386	1.4801	0.0007434	-3.1905	-0.0016025	-1.7104	-0.00085911	502.2748702304025	24.502	0.16879	24.502	24.43	24.598	0	1302	97	0.8357362	0.059068024	0.8357362	339.34558	0	23.984192						467	8	4	NaN	NaN	NaN	0.032409	1	8700	8700		55.958	26.36	1	76722			1914	1084	1102	1122	1485	1485					0.03742938211712499
DAFLKEPAL	9	Unmodified	_DAFLKEPAL_					0	0	0		ENSG00000092010|ENST00000206451|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.276575035	2	502.276575	1002.5386	1.219	0.00061226	-0.81579	-0.00040975	0.40319	0.00020251	502.2761093032492	24.526	0.19304	24.514	24.441	24.634	-0.012392	1302	94	0.8357362	0.05721903	0.8342168	339.34555	0	23.233429						440	9	4	NaN	NaN	NaN	0.10206	1	8527	8527		35.523	1.069	1	67501			1915	1084	1102	1122	1486	1486					0.03742938211712499
DAFPDQVAI	9	Unmodified	_DAFPDQVAI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.4781879687001	1	975.478188	974.470912	1.522	0.0014847	2.9861	0.0029129	4.5082	0.0043976	975.4816110956898	27.687	0.072376	27.677	27.653	27.726	-0.009552	306	46	1.4375578	0.026709557	1.4360384	291.97372	0	5.4248047						79	4	2	NaN	NaN	NaN	0.2961	1	7576	7576		19.164	1.3646	1	7182.1			1916	1254	1103	1123	1487	1487					-0.01734511719087095
DAFPDQVAI	9	Unmodified						0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	975.478188	974.470912	1.7504	0.0017074	3.5549	0.0034677	5.3053	0.0051752	975.4819358171783	27.664	0.12066	27.664	27.615	27.736	0	306	46	1.4375578	0.026709557	1.4375578	291.97372		5.4248047	-0.0068838	0.00026432	0.00075972	NaN	19.164	102	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8763.8			1917	1254	1103	1123							-0.01734511719087095
DAGAEYVV	8	Unmodified	_DAGAEYVV_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000425487.2_1_X:46299833-46299950:-|nuORF;ENST00000466525.1_1_12:6645960-6646242:+|nuORF;ENST00000507324.1_1_15:64821358-64821781:-|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.3832249510001	1	823.383225	822.375948	2.0304	0.0016718	-0.94122	-0.00077498	1.0891	0.00089678	823.3825299703622	21.705	0.12046	21.705	21.681	21.802	0	522	37	1.3088527	0.02153325	1.3088527	266.51773	0	4.3847656						98	6	2	NaN	NaN	NaN	0.67593	1	5046	5046		20.555	11.432	1	7197.1			1918	1819	1104	1124	1488	1488					-0.042344451902749825
DAGAEYVV	8	Unmodified	_DAGAEYVV_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000425487.2_1_X:46299833-46299950:-|nuORF;ENST00000466525.1_1_12:6645960-6646242:+|nuORF;ENST00000507324.1_1_15:64821358-64821781:-|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.3832249510001	1	823.383225	822.375948	1.7842	0.0014691	-3.0113	-0.0024795	-1.2271	-0.0010103	823.3806055496291	21.705	0.096312	21.691	21.667	21.764	-0.013897	525	40	1.3070582	0.0233289	1.3055388	266.15234	0	4.7503967						82	5	2	NaN	NaN	NaN	0.54545	1	4932	4932		28.667	10.886	1	6177.2			1919	1819	1104	1124	1489	1489					-0.042344451902749825
DAGDKEGYEKL	11	Unmodified	_DAGDKEGYEKL_					0	0	0		tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.7907748325001	2	612.790775	1223.567	0.69024	0.00042298	-5.7903	-0.0035482	-5.1	-0.0031252	612.78638840206	26.625	0.16888	26.614	26.566	26.735	-0.010643	1170	61	0.91673553	0.03672248	0.9152161	371.32312	0	14.87442						157	8	2	NaN	NaN	NaN	0.63747	1	16368	16368		11.561	0.39098	1	51831			1920	13970	1105	1125	1490	1490					-0.0358440866964429
DAGDKEGYEKL	11	Unmodified						0	0	0		tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	tr|U7T3C8|U7T3C8_FUSNU4Fe-4Sdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00221PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.790775	1223.567	1.1136	0.0006824	-5.8233	-0.0035685	-4.7097	-0.0028861	612.7869288678239	26.65	0.26597	26.65	26.577	26.843	0	1170	85	0.91673553	0.051422596	0.91673553	371.32312		20.828705	0.01756	-2.144E-05	0.00075972	NaN	11.561	210	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56325			1921	13970	1105	1125							-0.0358440866964429
DAGFEISAM	9	Oxidation (M)	_DAGFEISAM(Oxidation (M))_		DAGFEISAM(1)		DAGFEISAM(42)	0	0	1		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4029741151	1	956.402974	955.395698	1.9071	0.0018239	-0.2498	-0.00023891	1.6573	0.001585	956.4027874196372	23.031	0.096243	23.031	22.959	23.055	0	360	43	1.405474	0.0249753	1.405474	285.53683	0	5.074005						78	5	2	NaN	NaN	NaN	0.060816	1	7210	7210		42.318	13.422	1	6662.1			1922	3401	1106	1126	1491	1491		381			-0.0837843724183358
DAGFEISAM	9	Oxidation (M)						0	0	1		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	956.402974	955.395698	1.9199	0.0018362	-0.012182	-1.1651E-05	1.9078	0.0018246	956.4026147397743	23.031	0.12047	23.017	22.945	23.065	-0.013294	354	46	1.4090419	0.026754975	1.4075224	286.2617		5.4355774	-0.0069555	0.00011827	0.0010242	NaN	42.318	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7639.6			1923	3401	1106	1126				381			-0.0837843724183358
DAGREYSL	8	Unmodified	_DAGREYSL_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.7168816079	2	455.716882	909.41921	1.4239	0.00064891	-1.7913	-0.00081634	-0.36739	-0.00016743	455.71602322396006	16.994	0.28785	16.981	16.933	17.221	-0.013294	1371	40	0.79324204	0.0240497	0.7917226	322.53714	0	9.778778						198	13	3	NaN	NaN	NaN	0.45636	1	6102	6102		33.425	4.7588	1	26952			1924	3107	1107	1127	1492	1492					-0.03912255412990362
DAGYVWSI	8	Unmodified	_DAGYVWSI_					0	0	0			REV__ENSG00000111181|ENST00000684302|SLC6A12	REV__ENSG00000111181|ENST00000684302|SLC6A12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.71889298060006	2	455.718893	909.423233	1.2486	0.00056899	-4.9947	-0.0022762	-3.7461	-0.0017072	455.71667059563407	16.973	0.16795	16.973	16.925	17.093	0	1371	40	0.79324204	0.0240497	0.79324204	322.53714	0	9.778748						157	8	3	NaN	NaN	NaN	0.45125	1	6218	6218		33.698	0.273	1	22516	+		1925	9090	1108	1128	1493	1493					-0.035101659192719126
DAGYVWSI	8	Unmodified						0	0	0			REV__ENSG00000111181|ENST00000684302|SLC6A12	REV__ENSG00000111181|ENST00000684302|SLC6A12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	455.718893	909.423233	1.2486	0.00056899	-4.9947	-0.0022762	-3.7461	-0.0017072	455.71667059563407	16.973	0.16795	16.973	16.925	17.093	0	1371	40	0.79324204	0.0240497	0.79324204	322.53714		9.778748	-0.0036626	0.0005884	0.00075972	NaN	33.698	157	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22516	+		1926	9090	1108	1128							-0.035101659192719126
DAHEETISI	9	Unmodified	_DAHEETISI_					0	0	0		ENST00000578557.1_1_18:9562972-9570431:-|nuORF;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;PPP4R1|p.D674Efs*35|1|0.49|ENSG00000154845|chr18:9559425-9559426|-/T|frameshift_variant;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1	ENST00000578557.1_1_18:9562972-9570431:-|nuORF	ENST00000578557.1_1_18:9562972-9570431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.7405536694501	2	507.740554	1013.46655	1.7909	0.0009093	-4.2562	-0.0021611	-2.4653	-0.0012518	507.738150245455	20.093	0.07205	20.093	20.093	20.165	0	1296	76	0.8394264	0.04615438	0.8394264	340.7942	0	18.737976						82	4	2	NaN	NaN	NaN	0.47587	1	9110	9110		10.605	3.0646	1	6253.6			1927	3859	1109	1129	1494	1494					-0.03964020932642143
DAHEETISI	9	Unmodified						0	0	0		ENST00000578557.1_1_18:9562972-9570431:-|nuORF;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;PPP4R1|p.D674Efs*35|1|0.49|ENSG00000154845|chr18:9559425-9559426|-/T|frameshift_variant;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1	ENST00000578557.1_1_18:9562972-9570431:-|nuORF	ENST00000578557.1_1_18:9562972-9570431:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	507.740554	1013.46655	1.7729	0.00090018	0.92197	0.00046812	2.6949	0.0013683	507.7410165948522	20.116	0.072222	20.102	20.078	20.15	-0.014141	1293	40	0.84127116	0.023979485	0.8397517	341.54312		9.735321	0.0047101	0.0024645	0.00016267	NaN	10.605	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4410.7			1928	3859	1109	1129							-0.03964020932642143
DAHPETIVL	9	Unmodified	_DAHPETIVL_					0	0	0		SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion;ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1	SYNE2-ITPK1|1|fusion	SYNE2-ITPK1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.7638318005	2	497.763832	993.513111	1.902	0.00094675	-2.6413	-0.0013148	-0.73931	-0.000368	497.7623525357857	22.597	0.14476	22.597	22.549	22.694	0	1311	85	0.83019954	0.051695704	0.83019954	337.1389	0	20.993286						319	7	3	NaN	NaN	NaN	0.17818	1	8343	8343		26.732	0.97976	1	62648			1929	13711	1110	1130	1495	1495					0.01609463689283075
DAHPETIVL	9	Unmodified	_DAHPETIVL_					0	0	0		SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion;ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1	SYNE2-ITPK1|1|fusion	SYNE2-ITPK1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.7638318005	2	497.763832	993.513111	1.0907	0.00054292	-1.6341	-0.00081337	-0.54333	-0.00027045	497.76281090462976	22.597	0.16886	22.583	22.535	22.704	-0.01354	1311	88	0.83019954	0.053533256	0.8286801	337.13885	0	21.739532						326	8	3	NaN	NaN	NaN	0.14301	1	8178	8178		29.598	5.7479	1	66028			1930	13711	1110	1130	1496	1496					0.01609463689283075
DAIAELDTL	9	Unmodified	_DAIAELDTL_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.488418304	1	960.488418	959.481142	1.923	0.001847	-4.6423	-0.0044589	-2.7193	-0.0026119	960.4834677605513	29.401	0.65162	29.401	29.232	29.884	0	333	220	1.4215236	0.13001454	1.4215236	288.78003	0	26.412231						2431	28	3	NaN	NaN	NaN	0.016254	1	7318	7318		76.739	8.6309	1	1025200			1931	1704;2559	1111	1131	1497	1497					-0.00021948784524283838
DAIEKAVSR	9	Unmodified	_DAIEKAVSR_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.7747308378	2	494.774731	987.534909	1.9656	0.00097255	-1.3201	-0.00065313	0.64559	0.00031942	494.7744461199191	13.445	0.19213	13.445	13.397	13.589	0	1287	37	0.8449601	0.022131324	0.8449601	343.16144	0	8.988129						161	9	3	NaN	NaN	NaN	0.022185	1	8137	8137		69.233	29.079	1	19720			1932	3137	1112	1132	1498	1498					0.040642684378553895
DAIEKAVSR	9	Unmodified	_DAIEKAVSR_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.7747308378	2	494.774731	987.534909	0.84159	0.0004164	-1.2669	-0.00062683	-0.42532	-0.00021044	494.7748442096504	13.469	0.16797	13.459	13.411	13.579	-0.010098	1284	37	0.8468043	0.022131324	0.8452849	343.9104	0	8.988129						152	8	3	NaN	NaN	NaN	0.028117	1	7973	7973		61.575	20.618	1	18434			1933	3137	1112	1132	1499	1499					0.040642684378553895
DAIITEGGENF	11	Unmodified	_DAIITEGGENF_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.2722179386001	2	583.272218	1164.52988	2.0598	0.0012014	-8.8227	-0.005146	-6.7629	-0.0039446	583.2671956466887	30.198	0.048292	30.198	30.149	30.198	0	1218	70	0.8873258	0.042315364	0.8873258	359.6139	0	17.149506						64	3	2	NaN	NaN	NaN	0.69801	1	15290	15290		7.5876	0.72439	1	6433.8			1934	338	1113	1133	1500	1500					-0.04580080215419002
DAIITEGGENF	11	Unmodified						0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	583.272218	1164.52988	1.8607	0.0010853	-3.1578	-0.0018418	-1.2971	-0.00075655	583.76947999006	30.366	0.048243	30.359	30.335	30.383	-0.0064106	1212	40	0.8910048	0.023914814	0.88948536	361.1049		9.692139	0.080748	0.0024516	0.0010798	NaN	7.5876	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3232.4			1935	338	1113	1133							-0.04580080215419002
DAIKDTVL	8	Unmodified	_DAIKDTVL_					0	0	0		ENST00000563366.5_1_16:23573052-23581908:+|nuORF;ENSG00000103353|ENST00000395878|UBFD1	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4880243735	1	874.488024	873.480748	1.7595	0.0015386	-1.1237	-0.00098267	0.63577	0.00055597	874.4871821849674	20.165	0.048046	20.165	20.141	20.189	0	402	34	1.3804773	0.019655824	1.3804773	280.83206	0	3.9985962						43	3	2	NaN	NaN	NaN	0.63486	1	5721	5721		23.118	6.5334	1	2634.6			1936	1434	1114	1134	1501	1501					0.03894676286279264
DAIKDTVL	8	Unmodified	_DAIKDTVL_					0	0	0		ENST00000563366.5_1_16:23573052-23581908:+|nuORF;ENSG00000103353|ENST00000395878|UBFD1	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.74765042005	2	437.74765	873.480748	1.1926	0.00052204	-1.7255	-0.00075533	-0.53293	-0.00023329	437.7469805406693	20.164	0.096367	20.15	20.126	20.222	-0.014143	1350	40	0.80618626	0.024028838	0.8046668	328.0009	0	9.776276						111	5	3	NaN	NaN	NaN	0.38377	1	5583	5583		37.302	12.341	1	15317			1937	1434	1114	1134	1502	1502					0.03894676286279264
DAIKDTVL	8	Unmodified						0	0	0		ENST00000563366.5_1_16:23573052-23581908:+|nuORF;ENSG00000103353|ENST00000395878|UBFD1	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	ENST00000563366.5_1_16:23573052-23581908:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	874.488024	873.480748	2.0369	0.0017812	-0.56329	-0.00049259	1.4736	0.0012886	874.4866519896241	20.188	0.048174	20.174	20.15	20.198	-0.014141	399	40	1.382264	0.023227215	1.3807446	281.19553		4.725128	0.0047915	0.00027003	0.00013363	NaN	23.118	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2851.3			1938	1434	1114	1134							0.03894676286279264
DAILWETEL	9	Unmodified	_DAILWETEL_					0	0	0		ENST00000276960.7_1_9:37515899-37521812:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENSG00000147912|ENST00000432825|FBXO10	ENST00000276960.7_1_9:37515899-37521812:-|nuORF	ENST00000276960.7_1_9:37515899-37521812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5462675339	1	1089.54627	1088.53899	1.5921	0.0017346	-2.0866	-0.0022734	-0.49452	-0.0005388	1089.5434324953721	32.804	0.096489	32.804	32.78	32.876	0	153	58	1.5281296	0.03364587	1.5281296	309.91534	0	6.823639						109	5	2	NaN	NaN	NaN	0.10956	1	12320	12320		34.439	18.976	1	10379			1939	3612	1115	1135	1503	1503					-0.0017368685910241766
DAILWETEL	9	Unmodified						0	0	0		ENST00000276960.7_1_9:37515899-37521812:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENSG00000147912|ENST00000432825|FBXO10	ENST00000276960.7_1_9:37515899-37521812:-|nuORF	ENST00000276960.7_1_9:37515899-37521812:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1089.54627	1088.53899	1.0092	0.0010996	0.33689	0.00036706	1.3461	0.0014666	1089.5462408025871	32.803	0.072384	32.8	32.776	32.848	-0.0031052	150	46	1.5299006	0.02655971	1.5283811	310.2745		5.3864746	-0.0020814	0.0016606	0.00012579	NaN	34.439	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6888.9			1940	3612	1115	1135							-0.0017368685910241766
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4840016280999	1	958.484002	957.476725	1.8516	0.0017748	-0.48443	-0.00046431	1.3672	0.0013105	958.4835674727094	26.384	0.1448	26.384	26.336	26.481	0	270	88	1.458913	0.051605582	1.458913	296.38437	0	10.483887						309	7	4	NaN	NaN	NaN	0.0028258	1	7273	7273		108.53	53.118	1	51766			1941	4073	1116	1136	1504	1504					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.7456390473499	2	479.745639	957.476725	1.7405	0.000835	-2.9325	-0.0014068	-1.192	-0.00057184	479.7443048245231	26.384	0.12066	26.373	26.349	26.469	-0.011137	1332	37	0.8172735	0.022167265	0.81575406	332.06024	0	9.006622						121	6	3	NaN	NaN	NaN	0.032826	1	7135	7135		55.413	5.4518	1	13788			1942	4073	1116	1136	1505	1505					-0.00371413207437854
DAINDANLL	9	Unmodified	_DAINDANLL_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4840016280999	1	958.484002	957.476725	1.7427	0.0016704	0.44822	0.00042961	2.1909	0.0021	958.4840723053464	26.384	0.16892	26.373	26.324	26.493	-0.011137	270	91	1.458913	0.053370833	1.4573935	296.38437	0	10.842529						321	8	4	NaN	NaN	NaN	0.028569	1	7136	7136		60.984	24.397	1	49800			1943	4073	1116	1136	1506	1506					-0.00371413207437854
DAINDANLL	9	Unmodified						0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	479.745639	957.476725	1.8897	0.00090656	-4.2961	-0.0020611	-2.4065	-0.0011545	479.74343579248875	26.384	0.096537	26.384	26.36	26.456	0	1332	40	0.8172735	0.02401328	0.8172735	332.06024		9.756622	0.0057035	-0.00058172	0.00075972	NaN	55.413	109	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15482			1944	4073	1116	1136							-0.00371413207437854
DAINTEFKNTR	11	Unmodified	_DAINTEFKNTR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.83076566025	2	654.830766	1307.64698	1.348	0.00088274	-0.56074	-0.00036719	0.7873	0.00051555	654.8309768191041	15.654	0.072074	15.654	15.63	15.702	0	1131	31	0.94059354	0.018339515	0.94059354	380.71338	0	7.423065						80	4	3	NaN	NaN	NaN	0.72557	1	18892	18892		10.861	6.5513	1	5997.8			1945	477	1117	1137	1507	1507					0.005460777241751202
DAINTEFKNTR	11	Unmodified	_DAINTEFKNTR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.83076566025	2	654.830766	1307.64698	1.2044	0.00078867	-1.001	-0.0006555	0.20336	0.00013317	654.8303640896162	15.148	0.096055	15.136	15.112	15.208	-0.012201	1110	28	0.95342636	0.016493917	0.9519069	385.90756	0	6.676056						69	5	2	NaN	NaN	NaN	0.32023	1	18061	18061		32.377	18.914	1	5446.3			1946	477	1117	1137	1508	1508					0.005460777241751202
DAIQEWVM	8	Unmodified	_DAIQEWVM_					0	0	0		ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.4553440366001	1	991.455344	990.448068	1.2938	0.0012828	1.2679	0.0012571	2.5617	0.0025399	991.456865033892	30.124	0.21721	30.118	30.045	30.263	-0.0064106	267	61	1.4606913	0.03556931	1.4591719	296.6055	0	7.2226257						329	10	4	NaN	NaN	NaN	0.5868	1	8053	8053		26.115	5.6663	1	39260			1947	4806	1118	1138	1509	1509					-0.04753854108219002
DAIQEWVM	8	Oxidation (M)	_DAIQEWVM(Oxidation (M))_		DAIQEWVM(1)		DAIQEWVM(96)	0	0	1		ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4502586587001	1	1007.45026	1006.44298	2.3212	0.0023385	4.8471	0.0048833	7.1683	0.0072217	1007.4518451549651	25.805	0.19308	25.793	25.769	25.962	-0.0116	276	100	1.4553556	0.05866742	1.4538362	295.45755	0	11.910309						465	9	3	NaN	NaN	NaN	0.026588	1	8662	8662		95.62	48.138	1	63522			1948	4806	1118	1139	1510	1510		509			-0.05998157970827833
DAIQGELEQ	9	Unmodified	_DAIQGELEQ_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4738308723001	1	1002.47383	1001.46655	1.9714	0.0019763	6.2719	0.0062874	8.2433	0.0082637	1002.4807504550188	23.947	0.09646	23.934	23.861	23.958	-0.013048	255	55	1.4678029	0.03199196	1.4662834	298.00452	0	6.4952393						94	5	2	NaN	NaN	NaN	0.49999	1	8473	8473		9.6116	0.64966	1	7057.7	+		1949	8726	1119	1140	1511	1511					-0.03412020932648829
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.27456366229995	2	508.274564	1014.53457	2.375	0.0012072	-1.2576	-0.00063921	1.1174	0.00056796	508.2739354288073	22.887	0.24095	22.887	22.814	23.055	0	1290	67	0.84311575	0.040578544	0.84311575	342.28717	0	16.473999						519	11	6	NaN	NaN	NaN	0.019939	1	9153	9153		72.076	16.484	1	180530			1950	3149	1120	1141	1512	1512					0.027888487179893673
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.541850858	1	1015.54185	1014.53457	2.4285	0.0024662	-0.7355	-0.00074693	1.693	0.0017193	1015.540629304255	22.887	0.14463	22.887	22.863	23.007	0	222	52	1.4873441	0.030180931	1.4873441	301.91916	0	6.1264954						168	7	3	NaN	NaN	NaN	0.052553	1	9155	9155		45.827	21.265	1	16884			1951	3149	1120	1141	1513	1513					0.027888487179893673
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.27456366229995	2	508.274564	1014.53457	1.5758	0.00080092	-1.637	-0.00083205	-0.061245	-3.1129E-05	508.27362534178957	22.91	0.21693	22.896	22.8	23.017	-0.01354	1290	73	0.84311575	0.044262707	0.8415963	342.28717	0	17.969696						469	10	5	NaN	NaN	NaN	0.045904	1	8978	8978		48.65	16.975	1	172820			1952	3149	1120	1141	1514	1514					0.027888487179893673
DAIRDAEIL	9	Unmodified	_DAIRDAEIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.541850858	1	1015.54185	1014.53457	1.8551	0.0018839	-1.8971	-0.0019266	-0.042062	-4.2716E-05	1015.5398302105756	22.91	0.12059	22.896	22.872	22.993	-0.01354	222	55	1.4873441	0.031957865	1.4858247	301.91916	0	6.487213						154	6	2	NaN	NaN	NaN	0.38313	1	8979	8979		14.425	3.2547	1	17481			1953	3149	1120	1141	1515	1515					0.027888487179893673
DALQELVEL	9	Unmodified	_DALQELVEL_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;PAIP1|p.H228*|1|0.24|ENSG00000172239|chr5:43543046-43543056|ATTGTCAGATG/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5462675339	1	1029.54627	1028.53899	1.0393	0.00107	-1.1628	-0.0011972	-0.12356	-0.00012721	1029.5468806631181	33.697	0.14478	33.697	33.673	33.817	0	126	109	1.544062	0.06370616	1.544062	313.37518	0	12.929504						281	7	3	NaN	NaN	NaN	0.01966	1	9721	9721		72.428	14.193	1	34635			1954	4830	1121	1142	1516	1516					0.02586313140909624
DALQELVEL	9	Unmodified						0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;PAIP1|p.H228*|1|0.24|ENSG00000172239|chr5:43543046-43543056|ATTGTCAGATG/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1029.54627	1028.53899	0.6641	0.00068372	-0.22923	-0.000236	0.43487	0.00044772	1029.5464413254758	33.72	0.14482	33.718	33.67	33.814	-0.0018463	123	76	1.5458313	0.044233322	1.5443119	313.73428		8.977386	0.010509	0.00025252	0.00012495	NaN	72.428	203	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27013			1955	4830	1121	1142							0.02586313140909624
DALVDFSL	8	Unmodified	_DALVDFSL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4458252078001	1	879.445825	878.438549	1.374	0.0012083	0.48559	0.00042705	1.8596	0.0016354	879.4457715391951	32.514	0.072361	32.514	32.49	32.563	0	354	55	1.4090419	0.032111168	1.4090419	286.6179	0	6.53183						157	4	4	NaN	NaN	NaN	0.3042	1	5778	5778		41.785	10.223	1	14417			1956	3659	1122	1143	1517	1517					-0.005532991220889016
DALVDFSL	8	Unmodified	_DALVDFSL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4458252078001	1	879.445825	878.438549	0.88526	0.00077854	0.16703	0.0001469	1.0523	0.00092544	879.4462255747334	32.513	0.14478	32.51	32.462	32.607	-0.0031052	351	49	1.4108255	0.028540134	1.409306	286.9807	0	5.8054504						137	7	2	NaN	NaN	NaN	0.65075	1	5655	5655		22.126	4.346	1	13990			1957	3659	1122	1143	1518	1518					-0.005532991220889016
DAQADEAVL	9	Unmodified	_DAQADEAVL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4367170845	1	931.436717	930.429441	1.9833	0.0018473	-0.27239	-0.00025371	1.7109	0.0015936	931.4367400638768	21.464	0.24106	21.464	21.416	21.657	0	363	85	1.4036897	0.049966574	1.4036897	285.28308	0	10.155121						552	11	4	NaN	NaN	NaN	0.012495	1	6613	6613		85.344	6.1456	1	98221			1958	3637	1123	1144	1519	1519					-0.03855692478430228
DAQADEAVL	9	Unmodified						0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000448361.5_2_10:22605382-22607041:+|nuORF;ENST00000496071.5_1_10:22605382-22607284:+|nuORF;ENST00000479958.6_1_10:22605346-22607121:+|nuORF;ENST00000602574.5_1_10:22605346-22607236:+|nuORF;ENST00000470045.1_1_10:22605346-22607030:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	931.436717	930.429441	1.5973	0.0014878	-0.29251	-0.00027246	1.3048	0.0012153	931.4364949665579	21.464	0.26492	21.45	21.378	21.643	-0.014006	360	82	1.405474	0.048184633	1.4039545	285.64572		9.792969	-0.0069912	-9.6272E-06	0.0001324	NaN	85.344	542	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96750			1959	3637	1123	1144							-0.03855692478430228
DASAEVERL	9	Unmodified	_DASAEVERL_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.24854587705005	2	495.248546	988.482539	1.6707	0.0008274	-1.2723	-0.00063013	0.39833	0.00019727	495.2478706338829	18.314	0.26405	18.3	18.252	18.516	-0.01395	1338	49	0.81357855	0.029559612	0.8120591	330.41217	0	12.004791						223	12	3	NaN	NaN	NaN	0.19455	1	7990	7990		25.681	5.1259	1	40508			1960	2633	1124	1145	1520	1520					-0.012163146957504978
DASGPDPQL	9	Unmodified	_DASGPDPQL_					0	0	0		ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	ENST00000450081.5_1_6:58285388-58287665:-|nuORF	ENST00000450081.5_1_6:58285388-58287665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.20888940029994	2	450.208889	898.403226	1.3194	0.000594	-1.8708	-0.00084227	-0.55146	-0.00024827	450.207904805277	19.684	0.19213	19.684	19.612	19.804	0	1401	64	0.77473325	0.03890854	0.77473325	315.06882	0	15.823334						281	9	3	NaN	NaN	NaN	0.03618	1	6035	6035		52.78	10.462	1	37423			1961	929	1125	1146	1521	1521					-0.050039616499134354
DASGPDPQL	9	Unmodified	_DASGPDPQL_					0	0	0		ENST00000450081.5_1_6:58285388-58287665:-|nuORF;ENST00000508973.5_1_5:21459626-21473494:+|nuORF;ENST00000509649.5_1_5:21459626-21462031:+|nuORF;ENST00000505799.1_1_5:37379427-37381852:+|nuORF;ENST00000607545.5_1_5:21459668-21501934:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	ENST00000450081.5_1_6:58285388-58287665:-|nuORF	ENST00000450081.5_1_6:58285388-58287665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.20888940029994	2	450.208889	898.403226	1.2097	0.00054463	-0.94256	-0.00042435	0.26717	0.00012028	450.20860243031126	19.683	0.19253	19.669	19.621	19.813	-0.014141	1401	64	0.77473325	0.03890425	0.7732138	315.0688	0	15.821594						285	9	3	NaN	NaN	NaN	0.041983	1	5922	5922		50.315	2.8336	1	33753			1962	929	1125	1146	1522	1522					-0.050039616499134354
DASHEGHG	8	Unmodified	_DASHEGHG_					0	0	0			REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF	REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3172706508002	1	809.317271	808.309994	2.2215	0.0017979	3.8914	0.0031494	6.113	0.0049473	809.3207340397746	22.043	0.21702	22.043	21.97	22.187	0	492	73	1.3267875	0.043015957	1.3267875	270.24695	0	8.761719						343	10	2	NaN	NaN	NaN	0.82332	1	4861	4861		6.0903	0	1	59699	+		1963	11670	1126	1147	1523	1523					-0.10182841312450819
DASHEGHG	8	Unmodified						0	0	0			REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF	REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.317271	808.309994	2.2215	0.0017979	3.8914	0.0031494	6.113	0.0049473	809.3207340397746	22.043	0.21702	22.043	21.97	22.187	0	492	73	1.3267875	0.043015957	1.3267875	270.24695		8.761719	0.019108	0.00047204	-0.0001365	NaN	6.0903	343	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59699	+		1964	11670	1126	1147							-0.10182841312450819
DASKLQFIL	9	Unmodified	_DASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.79767461785	2	517.797675	1033.5808	1.7321	0.0008969	-0.63138	-0.00032693	1.1008	0.00056997	517.797521580308	28.581	0.14477	28.581	28.532	28.677	0	1254	49	0.8652351	0.029476583	0.8652351	351.1805	0	11.963898						136	7	2	NaN	NaN	NaN	0.40649	1	9942	9942		13.463	1.9146	1	15835			1965	3069	1127	1148	1524	1524					0.06534913620089355
DASKLQFIL	9	Unmodified						0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.797675	1033.5808	1.0961	0.00056758	-3.2885	-0.0017028	-2.1924	-0.0011352	517.7957324090635	28.58	0.072386	28.572	28.547	28.62	-0.0083485	1254	49	0.8652351	0.029473364	0.86371565	351.18054		11.962616	-0.0045381	-0.0015163	-0.00075972	NaN	13.463	96	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12271			1966	3069	1127	1148							0.06534913620089355
DASNSEWQL	9	Unmodified	_DASNSEWQL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENST00000511972.1_1_5:16710938-16713441:-|nuORF	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.4534297812	1	1049.45343	1048.44615	2.5048	0.0026286	-1.5285	-0.0016041	0.97624	0.0010245	1049.451250453641	25.684	0.14477	25.684	25.66	25.805	0	243	46	1.4749115	0.026650071	1.4749115	299.26553	0	5.4074097						120	7	2	NaN	NaN	NaN	0.16939	1	10554	10554		27.296	9.4972	1	9886.1			1967	3519	1128	1149	1525	1525					-0.07613191592463409
DASNSEWQL	9	Unmodified	_DASNSEWQL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENST00000511972.1_1_5:16710938-16713441:-|nuORF	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.4534297812	1	1049.45343	1048.44615	2.3923	0.0025106	-0.91221	-0.00095732	1.4801	0.0015532	1049.4520216110866	25.684	0.12063	25.672	25.648	25.769	-0.0116	240	40	1.4766881	0.02309668	1.4751687	299.626	0	4.6864014						90	6	2	NaN	NaN	NaN	0.070055	1	10336	10336		40.154	19.598	1	7264.9			1968	3519	1128	1149	1526	1526					-0.07613191592463409
DASSLEYLF	9	Unmodified	_DASSLEYLF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.4884183039997	1	1044.48842	1043.48114	1.0266	0.0010723	-2.0995	-0.0021929	-1.0729	-0.0011206	1044.4846809245644	33.456	0.14478	33.456	33.407	33.552	0	168	55	1.5192716	0.03189361	1.5192716	308.28543	0	6.4717407						156	7	3	NaN	NaN	NaN	0.20577	1	10347	10347		24.961	4.4056	1	13877			1969	4134	1129	1150	1527	1527					-0.0388594878454569
DASSLEYLF	9	Unmodified						0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1044.48842	1043.48114	0.75715	0.00079084	-1.7186	-0.0017951	-0.9615	-0.0010043	1044.486683994531	33.454	0.1931	33.452	33.428	33.621	-0.0018501	165	61	1.5210435	0.03544116	1.5195241	308.645		7.1915894	-0.0015965	0.00013556	0.00012626	NaN	24.961	158	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13205			1970	4134	1129	1150							-0.0388594878454569
DASVEPDPL	9	Unmodified	_DASVEPDPL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4414681114	1	942.441468	941.434192	1.8994	0.0017901	0.8464	0.00079769	2.7458	0.0025878	942.4419075648279	23.031	0.096298	23.017	22.993	23.09	-0.013294	363	67	1.4036897	0.039263725	1.4021703	285.23444	0	7.9785156						166	5	3	NaN	NaN	NaN	0.025843	1	6703	6703		64.55	25.632	1	12616			1971	1163	1130	1151	1528	1528					-0.03886808335664682
DATDGFKG	8	Unmodified	_DATDGFKG_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.3628238599	1	810.362824	809.355547	1.8706	0.0015158	4.9693	0.004027	6.8399	0.0055428	810.3662101114176	24.237	0.14479	24.237	24.213	24.357	0	510	109	1.316029	0.0645653	1.316029	268.0498	0	13.150696						365	7	4	NaN	NaN	NaN	0.67593	1	4876	4876		20.555	1.4371	1	89809	+		1972	11249	1131	1152	1529	1529					-0.05675615850088889
DAVFELISM	9	Oxidation (M)	_DAVFELISM(Oxidation (M))_		DAVFELISM(1)		DAVFELISM(61)	0	0	1		ENSG00000162819|ENST00000340934|BROX	ENSG00000162819|ENST00000340934|BROX	ENSG00000162819|ENST00000340934|BROX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.4968745003	1	1040.49687	1039.4896	1.0751	0.0011187	1.9086	0.0019859	2.9837	0.0031045	1040.4990176254971	30.97	0.14481	30.97	30.922	31.066	0	174	88	1.5157272	0.051419616	1.5157272	307.5816	0	10.434418						311	7	3	NaN	NaN	NaN	0.02857	1	10179	10179		60.982	19.197	1	69580			1973	4184	1132	1153	1530	1530		450			-0.028567181395374064
DAVPQPTP	8	Unmodified	_DAVPQPTP_					0	0	0			REV__nc|ENSG00000047056|Q9Y2I8-3|WDR37	REV__nc|ENSG00000047056|Q9Y2I8-3|WDR37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4148594304	1	824.414859	823.407583	0.9533	0.00078591	2.4517	0.0020212	3.405	0.0028071	824.4174931764253	31.862	0.096518	31.857	31.833	31.93	-0.0044155	459	52	1.3464937	0.030448556	1.3449743	274.1768	0	6.200012						96	5	2	NaN	NaN	NaN	0.72013	1	4945	4945		17.799	2.6236	1	6553.7	+		1974	8474	1133	1154	1531	1531					-0.011184524363329729
DAVQLSLEDP	10	Unmodified	_DAVQLSLEDP_					0	0	0			REV__ENSG00000114790|ENST00000465093|ARHGEF26	REV__ENSG00000114790|ENST00000465093|ARHGEF26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7693111089001	2	543.769311	1085.52407	1.4963	0.00081362	4.3344	0.0023569	5.8307	0.0031705	543.7722721208094	15.198	0.07212	15.198	15.15	15.222	0	1242	46	0.87260187	0.027620852	0.87260187	353.94766	0	11.203644						60	4	2	NaN	NaN	NaN	0.58645	1	12198	12198		15.822	2.8191	1	4878.1	+		1975	9170	1134	1155	1532	1532					-0.015271787270876303
DAVQREYQL	9	Unmodified	_DAVQREYQL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2829200106501	2	561.28292	1120.55129	2.461	0.0013813	-4.6105	-0.0025878	-2.1495	-0.0012064	561.2802155933574	18.436	0.23984	18.436	18.388	18.628	0	1260	82	0.8615505	0.049717486	0.8615505	349.3281	0	20.15866						422	11	3	NaN	NaN	NaN	0.12104	1	13701	13701		32.778	6.6631	1	69291			1976	912	1135	1156	1533	1533					-0.004166503960504997
DAVQREYQL	9	Unmodified	_DAVQREYQL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2829200106501	2	561.28292	1120.55129	2.0042	0.0011249	-4.0453	-0.0022706	-2.0411	-0.0011457	561.2805919721327	18.458	0.264	18.444	18.372	18.636	-0.01395	1260	88	0.8615505	0.053394496	0.8600311	349.3281	0	21.649597						364	12	3	NaN	NaN	NaN	0.090258	1	13297	13297		37.231	8.3353	1	69234			1977	912	1135	1156	1534	1534					-0.004166503960504997
DAVSGDELM	9	Unmodified	_DAVSGDELM_					0	0	0		nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENSG00000023734|ENST00000419869|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.3978887372	1	936.397889	935.390612	2.1293	0.0019939	0.48657	0.00045563	2.6159	0.0024495	936.3984629552886	22.886	0.096512	22.872	22.848	22.945	-0.01354	348	49	1.412609	0.028537154	1.4110895	287.0736	0	5.7993774						81	5	2	NaN	NaN	NaN	0.56671	1	6583	6583		6.8632	0	1	5677.7			1978	7898	1136	1157	1535	1535					-0.07966741104451103
DAVSGDELM	9	Unmodified						0	0	0		nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENSG00000023734|ENST00000419869|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.397889	935.390612	1.9843	0.0018581	0.2057	0.00019262	2.19	0.0020507	936.39645484374	22.887	0.096464	22.887	22.863	22.959	0	354	40	1.4090419	0.02319014	1.4090419	286.3487		4.7127686	0.0071618	-0.00015547	-0.0010239	NaN	6.8632	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4168.5			1979	7898	1136	1157							-0.07966741104451103
DAVSPAAPP	9	Unmodified	_DAVSPAAPP_					0	0	0			REV__ENSG00000197019|ENST00000357949|SERTAD1	REV__ENSG00000197019|ENST00000357949|SERTAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.4148594303999	1	824.414859	823.407583	1.4134	0.0011653	4.7234	0.0038941	6.1369	0.0050593	824.418549510849	31.887	0.09654	31.887	31.863	31.959	0	468	55	1.3411216	0.0322448	1.3411216	273.08292	0	6.5657654						82	5	2	NaN	NaN	NaN	0.55027	1	5066	5066		7.5404	1.2902	1	6162.2	+		1980	11128	1137	1158	1536	1536					-0.011184524363443415
DAVSPAAPP	9	Unmodified						0	0	0			REV__ENSG00000197019|ENST00000357949|SERTAD1	REV__ENSG00000197019|ENST00000357949|SERTAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	824.414859	823.407583	1.4134	0.0011653	4.7234	0.0038941	6.1369	0.0050593	824.418549510849	31.887	0.09654	31.887	31.863	31.959	0	468	55	1.3411216	0.0322448	1.3411216	273.08292		6.5657654	0.014792	0.00082982	-0.0019263	NaN	7.5404	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6162.2	+		1981	11128	1137	1158							-0.011184524363443415
DAVSPAAPP	9	Unmodified						0	0	0			REV__ENSG00000197019|ENST00000357949|SERTAD1	REV__ENSG00000197019|ENST00000357949|SERTAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	824.414859	823.407583	0.9533	0.00078591	2.4517	0.0020212	3.405	0.0028071	824.4174931764253	31.862	0.096518	31.857	31.833	31.93	-0.0044155	459	52	1.3464937	0.030448556	1.3449743	274.1768		6.200012	-0.014792	-0.001043	0.0019263	NaN	7.5404	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6553.7	+		1982	11128	1137	1158							-0.011184524363443415
DAVVETSSL	9	Unmodified	_DAVVETSSL_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4571181756002	1	920.457118	919.449842	1.67	0.0015372	0.93869	0.00086402	2.6087	0.0024012	920.4574744396302	21.561	0.1205	21.561	21.513	21.633	0	435	52	1.360811	0.030409694	1.360811	276.61664	0	6.1814575						158	6	3	NaN	NaN	NaN	0.042816	1	6402	6402		49.961	10.503	1	20449			1983	3234	1138	1159	1537	1537					-0.013105218185955891
DAVVETSSL	9	Unmodified	_DAVVETSSL_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4571181756002	1	920.457118	919.449842	1.4148	0.0013023	-0.38221	-0.00035181	1.0326	0.00095044	920.4559188064109	21.561	0.14449	21.547	21.499	21.643	-0.013895	432	55	1.3625998	0.03219676	1.3610804	276.9803	0	6.544739						169	7	3	NaN	NaN	NaN	0.019103	1	6268	6268		73.133	17.639	1	20837			1984	3234	1138	1159	1538	1538					-0.013105218185955891
DAYYLLKDFAL	11	Unmodified	_DAYYLLKDFAL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3477286054001	2	666.347729	1330.6809	0.94265	0.00062813	-3.4281	-0.0022843	-2.4854	-0.0016561	666.3452474855912	33.624	0.24122	33.624	33.576	33.817	0	1101	52	0.95892316	0.03113848	0.95892316	388.0622	0	12.601288						256	11	4	NaN	NaN	NaN	0.080647	1	19266	19266		42.061	23.503	1	38478			1985	3097	1139	1160	1539	1539					0.02879106163254619
DAYYLLKDFAL	11	Unmodified	_DAYYLLKDFAL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3477286054001	2	666.347729	1330.6809	0.88354	0.00058875	-3.5785	-0.0023845	-2.695	-0.0017958	666.346014163166	33.623	0.1689	33.621	33.597	33.766	-0.0018501	1095	61	0.9625867	0.036623597	0.96106726	389.54477	0	14.821045						265	8	4	NaN	NaN	NaN	0.066897	1	18406	18406		45.55	30.375	1	41573			1986	3097	1139	1160	1540	1540					0.02879106163254619
DCCASAHC	8	Unmodified	_DCCASAHC_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.12239096639996	2	405.122391	808.230229	0.32299	0.00013085	-9.3808	-0.0038004	-9.0578	-0.0036695	405.11844330641213	35.144	0.096554	35.144	35.096	35.192	0	1464	49	0.73579943	0.029697716	0.73579943	299.7372	0	12.097717						135	5	2	NaN	NaN	NaN	0.84876	1	4856	4856		0.39566	0	1	31295			1987	5551	1140	1161	1541	1541					-0.1815569057398534
DCDRVAAALRC	11	Unmodified	_DCDRVAAALRC_					0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.7817069776501	2	596.781707	1191.54886	1.3242	0.00079028	0.99459	0.00059355	2.3188	0.0013838	596.7827226482435	24.96	0.24131	24.96	24.864	25.105	0	1137	40	0.9369253	0.023845196	0.9369253	379.61465	0	9.661377						223	11	4	NaN	NaN	NaN	0.66717	1	16190	16190		9.6116	1.3341	1	34066	+		1988	10574	1141	1162	1542	1542					-0.03925145397010965
DCDRVAAALRC	11	Unmodified						0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.781707	1191.54886	1.3242	0.00079028	0.99459	0.00059355	2.3188	0.0013838	596.7827226482435	24.96	0.24131	24.96	24.864	25.105	0	1137	40	0.9369253	0.023845196	0.9369253	379.61465		9.661377	0.0063002	-0.00079148	0.00075972	NaN	9.6116	223	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34066	+		1989	10574	1141	1162							-0.03925145397010965
DCDRVAAALRC	11	Unmodified						0	0	0			REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	REV__nc|ENSG00000266302|A2RUR9-2|CCDC144A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	596.781707	1191.54886	1.0601	0.00063267	2.4904	0.0014862	3.5505	0.0021189	596.7834502331881	24.96	0.19301	24.948	24.924	25.117	-0.012394	1137	34	0.9369253	0.020176709	0.93540585	379.61465		8.175018	-0.0063002	0.00099382	-0.00075972	NaN	9.6116	197	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29189	+		1990	10574	1141	1162							-0.03925145397010965
DCHGSGCD	8	Unmodified	_DCHGSGCD_					0	0	0			REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.1156201793	2	397.11562	792.216687	2.2928	0.00091051	-7.2224	-0.0028681	-4.9296	-0.0019576	397.11269418091825	25.949	0.096537	25.938	25.914	26.01	-0.0116	1470	40	0.7320868	0.024133325	0.73056734	298.32526	0	9.83432						91	5	2	NaN	NaN	NaN	0.84887	1	4563	4563		0.32989	0.32989	1	6632.1	+		1991	11359	1142	1163	1543	1543					-0.1877322508156567
DCHGSGCD	8	Unmodified						0	0	0			REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	397.11562	792.216687	1.725	0.00068504	-8.3723	-0.0033248	-6.6472	-0.0026397	397.1123072704545	25.974	0.096512	25.974	25.926	26.022	0	1470	43	0.7320868	0.02598548	0.7320868	298.3253		10.58905	0.017975	-0.00038116	0.00075972	NaN	0.32989	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6007.5	+		1992	11359	1142	1163							-0.1877322508156567
DCHGSGCD	8	Unmodified						0	0	0			REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	REV__SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	397.11562	792.216687	2.2928	0.00091051	-7.2224	-0.0028681	-4.9296	-0.0019576	397.11269418091825	25.949	0.096537	25.938	25.914	26.01	-0.0116	1470	40	0.7320868	0.024133325	0.73056734	298.32526		9.83432	-0.017975	0.0005321	-0.00075972	NaN	0.32989	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6632.1	+		1993	11359	1142	1163							-0.1877322508156567
DCLGDAGSFLV	11	Unmodified	_DCLGDAGSFLV_					0	0	0		chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|27;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|21	chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|27	chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7526067997001	2	548.752607	1095.49066	1.4855	0.00081517	6.5313	0.003584	8.0168	0.0043992	548.7554951343125	19.683	0.16846	19.669	19.597	19.765	-0.014141	1275	73	0.85233563	0.044214845	0.8508162	345.68777	0	17.932526						137	7	2	NaN	NaN	NaN	0.65577	1	12309	12309		10.36	3.3758	1	13681			1994	148	1143	1164	1544	1544					-0.053265037706296425
DCLRQATSCF	10	Unmodified	_DCLRQATSCF_					0	0	0		ENST00000421659.1_3_3:46395618-46396386:+|nuORF	ENST00000421659.1_3_3:46395618-46396386:+|nuORF	ENST00000421659.1_3_3:46395618-46396386:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1143.4921402484	1	1143.49214	1142.48486	2.2428	0.0025646	-11.752	-0.013438	-9.5091	-0.010874	1143.4793909637342	23.995	0.048233	23.982	23.982	24.03	-0.013048	138	82	1.5369828	0.04777205	1.5354633	311.52652	0	9.68277						102	3	2	NaN	NaN	NaN	0.6772	1	14052	14052		9.6116	4.7019	1	7244			1995	6919	1144	1165	1545	1545					-0.0806792555397351
DCLRRANEYG	10	Unmodified	_DCLRRANEYG_					0	0	0			REV__nc|ENSG00000152256|Q15118-2|PDK1	REV__nc|ENSG00000152256|Q15118-2|PDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.7774788795	2	598.777479	1195.5404	1.0935	0.00065474	-6.413	-0.0038399	-5.3195	-0.0031852	598.7723874995224	21.176	0.072319	21.162	21.138	21.21	-0.014004	1203	73	0.8965218	0.044119358	0.89500237	363.2305	0	17.875214						82	4	2	NaN	NaN	NaN	0.77513	1	15681	15681		1.7022	0	1	6314.1	+		1996	10048	1145	1166	1546	1546					-0.04954376041996511
DCPFDTAVQL	10	Unmodified	_DCPFDTAVQL_					0	0	0		nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7526067997001	2	554.752607	1107.49066	1.2423	0.00068914	2.7192	0.0015085	3.9615	0.0021977	554.7543986160741	28.459	0.048283	28.451	28.403	28.451	-0.0083504	1248	61	0.8689189	0.036837757	0.86739945	352.36615	0	14.938507						83	3	3	NaN	NaN	NaN	0.70677	1	12789	12789		7.5876	1.4973	1	8329.3			1997	1990	1146	1167	1547	1547					-0.05878503770645693
DCPFDTAVQL	10	Unmodified						0	0	0		nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.752607	1107.49066	1.4034	0.00077855	2.1259	0.0011793	3.5293	0.0019579	554.7535697705172	28.339	0.072369	28.339	28.291	28.363	0	1239	31	0.87444305	0.018412888	0.87444305	354.60632		7.466858	-0.055807	-0.00031314	0.0035218	NaN	7.5876	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5292.7			1998	1990	1146	1167							-0.05878503770645693
DCRPSSPSM	9	Unmodified	_DCRPSSPSM_					0	0	0			REV__ENST00000400274.5_1_21:47987567-47987681:+|nuORF	REV__ENST00000400274.5_1_21:47987567-47987681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.3971772307001	1	979.397177	978.389901	2.7185	0.0026625	-2.9526	-0.0028918	-0.23413	-0.00022931	979.3954684567765	26.07	0.048275	26.07	26.022	26.07	0	300	34	1.4411188	0.01958692	1.4411188	292.68066	0	3.9779663						29	3	2	NaN	NaN	NaN	0.49672	1	7832	7832		9.746	0.78402	1	1721.1	+		1999	12034	1147	1168	1548	1548					-0.10015859025145346
DCYKYFIL	8	Unmodified	_DCYKYFIL_					0	0	0			REV__ENSG00000169905|ENST00000609928|TOR1AIP2	REV__ENSG00000169905|ENST00000609928|TOR1AIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.512130634	1	1064.51213	1063.50485	1.2025	0.0012801	-5.5275	-0.0058841	-4.325	-0.004604	1064.5062550421405	41.257	0.16842	41.257	41.209	41.377	0	192	46	1.5050892	0.026604772	1.5050892	305.33255	0	5.397217						153	8	2	NaN	NaN	NaN	0.57691	1	11271	11271		26.732	0.61661	1	12157	+		2000	10566	1148	1169	1549	1549					-0.024358065516935312
DDAAADLCNEH	11	Unmodified	_DDAAADLCNEH_					0	0	0			REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.8207484698333	3	391.820748	1172.44042	1.838	0.00072018	-5.3651	-0.0021021	-3.527	-0.001382	392.1529464838141	15.748	0.19179	15.735	15.615	15.807	-0.012611	1524	73	0.698637	0.04464823	0.69711757	424.67584	0	27.140045						278	9	4	NaN	NaN	NaN	0.76796	1	15008	15008		2.3495	0.45941	1	19698	+		2001	9397	1149	1170	1550	1550					-0.1389065816645143
DDAAADLCNEH	11	Unmodified						0	0	0			REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	391.820748	1172.44042	1.838	0.00072018	-5.3651	-0.0021021	-3.527	-0.001382	392.1529464838141	15.748	0.19179	15.735	15.615	15.807	-0.012611	1524	73	0.698637	0.04464823	0.69711757	424.67584		27.140045	0.052587	-0.0005064	-0.0016897	NaN	2.3495	278	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19698	+		2002	9397	1149	1170							-0.1389065816645143
DDCDGNPFI	9	Unmodified	_DDCDGNPFI_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.19238205635	2	498.192382	994.370211	1.2221	0.00060883	-3.9524	-0.0019691	-2.7304	-0.0013602	498.1906847336944	21.609	0.26489	21.595	21.499	21.764	-0.013897	1269	70	0.8560222	0.042411506	0.85450274	347.62122	0	17.22287						306	12	4	NaN	NaN	NaN	0.41766	1	8192	8192		13.003	2.3979	1	38640	+		2003	11226	1150	1171	1551	1551					-0.12719911764247627
DDCDGNPFI	9	Unmodified						0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.192382	994.370211	1.2221	0.00060883	-3.9524	-0.0019691	-2.7304	-0.0013602	498.1906847336944	21.609	0.26489	21.595	21.499	21.764	-0.013897	1269	70	0.8560222	0.042411506	0.85450274	347.62122		17.22287	0.017189	0.00018553	-0.00075972	NaN	13.003	306	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38640	+		2004	11226	1150	1171							-0.12719911764247627
DDDIDLDNT	9	Unmodified	_DDDIDLDNT_					0	0	0		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	345.80861437606666	3	345.808614	1034.40401	1.727	0.0005972	-1.6896	-0.00058427	0.037406	1.2935E-05	346.1424140733219	29.256	0.024117	29.256	29.256	29.28	0	1515	37	0.7042165	0.02231443	0.7042165	428.72977	0	13.585083						34	2	2	NaN	NaN	NaN	0.61413	1	9950	9950		2.5994	0.90097	1	2515.5			2005	5117	1151	1172	1552	1552					-0.11181211791495116
DDEGRSRNQR	10	Unmodified	_DDEGRSRNQR_					0	0	0		ENST00000588355.1_1_18:31804054-31804846:-|nuORF	ENST00000588355.1_1_18:31804054-31804846:-|nuORF	ENST00000588355.1_1_18:31804054-31804846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.78996347805	2	616.789963	1231.56537	1.5747	0.00097128	-1.8813	-0.0011603	-0.30652	-0.00018906	616.7889504928253	25.853	0.14478	25.853	25.805	25.95	0	999	106	1.0210962	0.06385368	1.0210962	413.56433	0	25.862						285	7	2	NaN	NaN	NaN	0.78146	1	17300	17300		0.16111	0	1	32198			2006	7713	1152	1173	1553	1553					-0.04114604915048403
DDESCLVL	8	Unmodified	_DDESCLVL_					0	0	0			REV__ENST00000482456.6_1_10:102259886-102268850:-|nuORF	REV__ENST00000482456.6_1_10:102259886-102268850:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.3920750778001	1	893.392075	892.384799	1.7764	0.001587	1.3159	0.0011756	3.0923	0.0027626	893.3934897849338	21.585	0.096292	21.571	21.547	21.643	-0.013895	405	58	1.3786905	0.033943772	1.377171	280.3764	0	6.902954						92	5	2	NaN	NaN	NaN	0.72043	1	5834	5834		17.78	1.3637	1	6656.3	+		2007	8615	1153	1174	1554	1554					-0.0656983961611104
DDETEDVKTAT	11	Unmodified	_DDETEDVKTAT_					0	0	0		ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;nc|ENSG00000008083|Q92833-2|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.5139785061666	3	408.513979	1222.52011	1.7934	0.00073261	7.901	0.0032277	9.6944	0.0039603	408.8509754931075	29.98	0.31378	29.98	29.836	30.149	0	1482	70	0.72465914	0.042720556	0.72465914	440.28415	0	25.955902						352	14	2	NaN	NaN	NaN	0.65577	1	17034	17034		7.2894	0.93302	1	109900			2008	368	1154	1175	1555	1555					-0.08225313011462276
DDFHVNGG	8	Unmodified	_DDFHVNGG_					0	0	0		nc|ENSG00000117586|P23510-2|TNFSF4;ENSG00000117586|ENST00000281834|TNFSF4	nc|ENSG00000117586|P23510-2|TNFSF4	nc|ENSG00000117586|P23510-2|TNFSF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	860.3533218061001	1	860.353322	859.346045	1.2243	0.0010533	-8.3223	-0.0071601	-7.098	-0.0061068	860.3457477488653	40.44	0.072197	40.44	40.416	40.488	0	462	43	1.3447032	0.025065899	1.3447032	273.62427	0	5.1004944						71	4	2	NaN	NaN	NaN	0.82332	1	5523	5523		6.0903	0.62448	1	4888.5			2009	2148	1155	1176	1556	1556					-0.08925384135613967
DDKTLNDLP	9	Unmodified	_DDKTLNDLP_					0	0	0			REV__ENST00000484346.1_1_7:131189072-131190857:-|nuORF	REV__ENST00000484346.1_1_7:131189072-131190857:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.75620373365	2	515.756204	1029.49785	1.393	0.00071845	1.8902	0.0009749	3.2832	0.0016933	515.7566958965285	19.106	0.16813	19.092	18.924	19.092	-0.014141	1299	70	0.8375814	0.042434454	0.83606195	339.97418	0	17.224152						201	8	2	NaN	NaN	NaN	0.40649	1	9553	9553		13.463	0.46021	1	24642	+		2010	9449	1156	1177	1557	1557					-0.015714478985955793
DDLTADTPFG	10	Unmodified	_DDLTADTPFG_					0	0	0			REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.4578464571	1	1051.45785	1050.45057	1.7748	0.0018661	3.5253	0.0037067	5.3001	0.0055728	1051.4610776098202	32.152	0.14475	32.152	32.104	32.249	0	135	61	1.5387528	0.035399795	1.5387528	312.21146	0	7.1825867						146	7	3	NaN	NaN	NaN	0.62764	1	10637	10637		13.003	0.41496	1	11502	+		2011	9727	1157	1178	1558	1558					-0.07263727169561207
DDLTADTPFG	10	Unmodified						0	0	0			REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1051.45785	1050.45057	1.7748	0.0018661	3.5253	0.0037067	5.3001	0.0055728	1051.4610776098202	32.152	0.14475	32.152	32.104	32.249	0	135	61	1.5387528	0.035399795	1.5387528	312.21146		7.1825867	-0.0096371	-7.0812E-05	0.00075972	NaN	13.003	146	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11502	+		2012	9727	1157	1178							-0.07263727169561207
DDLTADTPFG	10	Unmodified						0	0	0			REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	REV__ENST00000474273.5_1_2:170663267-170663405:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1051.45785	1050.45057	1.1371	0.0011956	3.7312	0.0039232	4.8683	0.0051188	1051.4618120595985	32.175	0.096485	32.172	32.123	32.22	-0.0037613	135	49	1.5387528	0.028319836	1.5372335	312.21146		5.7460938	0.0096371	0.00014564	-0.00075972	NaN	13.003	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8541.7	+		2013	9727	1157	1178							-0.07263727169561207
DDPSSLLFG	9	Unmodified	_DDPSSLLFG_					0	0	0			REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4465534893003	1	950.446553	949.439277	1.7169	0.0016319	2.7822	0.0026443	4.4991	0.0042762	950.4496275376691	27.712	0.072414	27.712	27.688	27.76	0	336	43	1.419741	0.024956703	1.419741	288.46103	0	5.070648						61	4	2	NaN	NaN	NaN	0.55027	1	7062	7062		7.5404	1.45	1	4719.3	+		2014	8914	1158	1179	1559	1559					-0.037465044730197405
DDPSSLLFG	9	Unmodified						0	0	0			REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	950.446553	949.439277	1.7169	0.0016319	2.7822	0.0026443	4.4991	0.0042762	950.4496275376691	27.712	0.072414	27.712	27.688	27.76	0	336	43	1.419741	0.024956703	1.419741	288.46103		5.070648	-0.006893	0.0011881	0.00075972	NaN	7.5404	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4719.3	+		2015	8914	1158	1179							-0.037465044730197405
DDPSSLLFG	9	Unmodified						0	0	0			REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	REV__ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	950.446553	949.439277	1.6067	0.0015271	0.47001	0.00044672	2.0767	0.0019738	950.4471646592481	27.735	0.048256	27.726	27.677	27.726	-0.009552	336	49	1.419741	0.028518915	1.4182216	288.46106		5.7944336	0.006893	-0.0010095	-0.00075972	NaN	7.5404	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4536.7	+		2016	8914	1158	1179							-0.037465044730197405
DDRRLLYRWVL	11	Unmodified	_DDRRLLYRWVL_					0	0	0			REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.9227920585	2	752.922792	1503.83103	1.8961	0.0014276	-10.191	-0.0076729	-8.2947	-0.0062453	752.9134110461089	36.854	0.072189	36.856	36.808	36.88	0.0022507	972	40	1.0375156	0.023709416	1.0359962	419.3702	0	9.583496						69	4	3	NaN	NaN	NaN	0.74155	1	19580	19580		4.7291	0.41892	1	4340.1	+		2017	8221	1159	1180	1560	1560					0.09926890945530431
DDTIATIIA	9	Unmodified	_DDTIATIIA_					0	0	0		ENSG00000177707|ENST00000485303|NECTIN3	ENSG00000177707|ENST00000485303|NECTIN3	ENSG00000177707|ENST00000485303|NECTIN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.4935036819002	1	932.493504	931.486227	1.6376	0.001527	0.028798	2.6854E-05	1.6664	0.0015539	932.4937564099839	27.302	0.14475	27.302	27.205	27.35	0	321	100	1.4286518	0.058779716	1.4286518	290.35153	0	11.946106						223	7	2	NaN	NaN	NaN	0.20577	1	6632	6632		24.961	5.8427	1	42270			2018	5085	1160	1181	1561	1561					0.017743550781119666
DDTIATIIA	9	Unmodified						0	0	0		ENSG00000177707|ENST00000485303|NECTIN3	ENSG00000177707|ENST00000485303|NECTIN3	ENSG00000177707|ENST00000485303|NECTIN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	932.493504	931.486227	2.034	0.0018967	-0.1735	-0.00016179	1.8605	0.0017349	932.493729225668	27.711	0.048267	27.702	27.702	27.75	-0.009552	306	37	1.4375578	0.021371007	1.4360384	292.16153		4.3433228	0.19997	-0.0001713	0.0036933	NaN	24.961	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2628.7			2019	5085	1160	1181							0.017743550781119666
DDTPVTTEL	9	Unmodified	_DDTPVTTEL_					0	0	0			REV__nc|ENSG00000083535|Q8WXW3-3|PIBF1	REV__nc|ENSG00000083535|Q8WXW3-3|PIBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.462597484	1	990.462597	989.455321	2.3902	0.0023674	-1.2998	-0.0012874	1.0904	0.00108	990.4619218306849	22.863	0.072412	22.863	22.838	22.911	0	291	40	1.446459	0.023138404	1.446459	293.71957	0	4.698517						69	4	2	NaN	NaN	NaN	0.14301	1	8181	8181		29.598	5.7479	1	5426.3	+		2020	8678	1161	1182	1562	1562					-0.039828430268016746
DDTVTEYI	8	Unmodified	_DDTVTEYI_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4254836962001	1	955.425484	954.418207	1.5344	0.001466	0.038567	3.6847E-05	1.573	0.0015029	955.4253604850288	21.97	0.12038	21.956	21.908	22.028	-0.013895	306	49	1.4375578	0.028491735	1.4360384	292.05927	0	5.7884827						109	6	2	NaN	NaN	NaN	0.65075	1	7038	7038		22.126	0	1	9632.4			2021	402	1162	1183	1563	1563					-0.06082514572551645
DDTVTEYI	8	Unmodified						0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	955.425484	954.418207	1.687	0.0016118	1.0856	0.0010372	2.7726	0.002649	955.4253742497775	21.97	0.12046	21.97	21.922	22.043	0	306	46	1.4375578	0.026709557	1.4375578	292.05923		5.4263916	0.0070667	0.00052955	0.00075972	NaN	22.126	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8940.8			2022	402	1162	1183							-0.06082514572551645
DDVPIILV	8	Unmodified	_DDVPIILV_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.5135108425002	1	883.513511	882.506234	1.3783	0.0012177	4.0989	0.0036214	5.4771	0.0048391	883.5175799229276	32.104	0.21715	32.104	32.056	32.273	0	345	55	1.4143922	0.032097578	1.4143922	287.68576	0	6.528595						192	10	2	NaN	NaN	NaN	0.72043	1	5837	5837		17.78	1.3637	1	22250			2023	4498	1163	1184	1564	1564					0.060281508087200564
DEAAQYNNLF	10	Unmodified	_DEAAQYNNLF_					0	0	0			REV__nc|ENSG00000153094|O43521-20|BCL2L11	REV__nc|ENSG00000153094|O43521-20|BCL2L11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1184.5218436973998	1	1184.52184	1183.51457	2.1546	0.0025522	-6.9749	-0.0082619	-4.8202	-0.0057097	1184.5146891400452	39.066	0.07238	39.071	39.023	39.095	0.0046806	156	46	1.5263584	0.026568055	1.5248389	309.2449	0	5.382782						101	4	3	NaN	NaN	NaN	0.77928	1	15339	15339		0.69115	0	1	6273.5	+		2024	10067	1164	1185	1565	1565					-0.06984947012620069
DEAAQYNNLF	10	Unmodified						0	0	0			REV__nc|ENSG00000153094|O43521-20|BCL2L11	REV__nc|ENSG00000153094|O43521-20|BCL2L11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1184.52184	1183.51457	1.7669	0.002093	-5.9432	-0.0070398	-4.1762	-0.0049469	1184.515885486628	39.093	0.048203	39.093	39.044	39.093	0	159	49	1.5245869	0.028340816	1.5245869	308.88602		5.7419434	0.010748	0.00061889	-0.00012598	NaN	0.69115	86	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6507.5	+		2025	10067	1164	1185							-0.06984947012620069
DEAAQYNNLF	10	Unmodified						0	0	0			REV__nc|ENSG00000153094|O43521-20|BCL2L11	REV__nc|ENSG00000153094|O43521-20|BCL2L11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1184.52184	1183.51457	2.1546	0.0025522	-6.9749	-0.0082619	-4.8202	-0.0057097	1184.5146891400452	39.066	0.07238	39.071	39.023	39.095	0.0046806	156	46	1.5263584	0.026568055	1.5248389	309.2449		5.382782	-0.010748	-0.00060315	0.00012598	NaN	0.69115	101	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6273.5	+		2026	10067	1164	1185							-0.06984947012620069
DEALLHCVL	9	Unmodified	_DEALLHCVL_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5131932665	1	1012.51319	1011.50592	1.2124	0.0012276	7.2729	0.0073639	8.4853	0.0085915	1012.5208148495911	35.239	0.14484	35.239	35.191	35.336	-4.1962E-05	258	103	1.4660252	0.060403585	1.4645058	297.60352	0	12.261932						284	7	4	NaN	NaN	NaN	0.078597	1	8869	8869		38.918	13.957	1	36591			2027	1648	1165	1186	1566	1566					0.0006240781719952793
DEAPQNTP	8	Unmodified	_DEAPQNTP_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.1932393361	2	436.193239	870.371926	1.3526	0.00059001	3.7348	0.0016291	5.0874	0.0022191	436.1948003261775	21.898	0.16871	21.898	21.874	22.043	0	1395	34	0.7784366	0.020365238	0.7784366	316.72827	0	8.286133						94	8	2	NaN	NaN	NaN	0.77489	1	5664	5664		12.588	2.5363	1	9768.8			2028	5823	1166	1187	1567	1567					-0.06844534683989423
DEAWTDERFPF	11	Unmodified	_DEAWTDERFPF_					0	0	0		TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.8094989018999	2	706.809499	1411.60444	1.6059	0.0011351	3.5064	0.0024784	5.1124	0.0036135	706.8109747954622	25.467	0.16889	25.455	25.358	25.527	-0.012011	1041	43	0.9955231	0.025592387	0.99400365	402.63617	0	10.350769						150	8	3	NaN	NaN	NaN	0.47586	1	19203	19203		19.336	4.9114	1	11584			2029	1792	1167	1188	1568	1568					-0.08489317404064423
DEAWTDERFPF	11	Unmodified						0	0	0		TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	706.809499	1411.60444	1.468	0.0010376	3.4601	0.0024457	4.9281	0.0034832	707.3142130304547	25.443	0.16892	25.443	25.371	25.539	0	1041	43	0.9955231	0.025595129	0.9955231	402.63617		10.351868	-0.0059119	-2.6453E-05	0.00075972	NaN	19.336	152	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12251			2030	1792	1167	1188							-0.08489317404064423
DECNHQHKW	9	Unmodified	_DECNHQHKW_					0	0	0			REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.74872144005	2	598.748721	1195.48289	1.3407	0.00080276	1.5148	0.00090701	2.8556	0.0017098	598.7503180740642	27.881	0.12066	27.881	27.833	27.953	0	1230	64	0.8799654	0.03863573	0.8799654	356.52277	0	15.653503						183	6	4	NaN	NaN	NaN	0.66529	1	16317	16317		2.1763	0.073765	1	13009	+		2031	10897	1168	1189	1569	1569					-0.10703218247567747
DEDENSSGESL	11	Unmodified	_DEDENSSGESL_					0	0	0			REV__ENSG00000189252|ENST00000370503|SPANXN3	REV__ENSG00000189252|ENST00000370503|SPANXN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2256616765001	2	591.225662	1180.43677	1.8249	0.0010789	-9.6714	-0.005718	-7.8465	-0.004639	591.2204621599726	22.983	0.19256	22.983	22.911	23.103	0	1242	40	0.87260187	0.02393806	0.87260187	353.59082	0	9.700043						197	9	3	NaN	NaN	NaN	0.77059	1	15831	15831		1.8901	0.55896	1	18447	+		2032	11081	1169	1190	1570	1570					-0.14623049459305548
DEDVYCFQYY	10	Unmodified	_DEDVYCFQYY_					0	0	0			REV__ENST00000503463.5_1_17:46925658-46925868:+|nuORF	REV__ENST00000503463.5_1_17:46925658-46925868:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.84114956093333	3	448.84115	1343.50162	0.20884	9.3737E-05	-6.5023	-0.0029185	-6.2935	-0.0028248	448.8384646023972	35.144	0.19308	35.144	35.096	35.289	0	1449	43	0.74507743	0.025971413	0.74507743	452.23514	0	15.763702						226	9	4	NaN	NaN	NaN	0.77421	1	19465	19465		0.71611	0	1	39249	+		2033	9658	1170	1191	1571	1571					-0.1563914618700437
DEEDEEPQAS	10	Unmodified	_DEEDEEPQAS_					0	0	0			REV__ENSG00000137822|ENST00000564079|TUBGCP4	REV__ENSG00000137822|ENST00000564079|TUBGCP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7149298147001	2	574.71493	1147.41531	1.637	0.00094082	0.0074449	4.2787E-06	1.6445	0.0009451	574.7156028469482	24.96	0.048279	24.96	24.936	24.985	0	1272	34	0.854179	0.020274997	0.854179	346.24063	0	8.218445						61	3	3	NaN	NaN	NaN	0.77421	1	14696	14696		1.9246	0.25428	1	4794.2	+		2034	9697	1171	1192	1572	1572					-0.15250434488007159
DEELGTEGSTS	11	Unmodified	_DEELGTEGSTS_					0	0	0		nc|ENSG00000196208|Q4ZG55-4|GREB1;ENSG00000196208|ENST00000381486|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.73312256785	2	562.733123	1123.45169	2.0183	0.0011358	-1.3156	-0.00074035	0.70266	0.00039541	562.7329375694432	23.947	0.36193	23.947	23.899	24.261	0	1260	58	0.8615505	0.03500533	0.8615505	349.3171	0	14.192932						541	16	5	NaN	NaN	NaN	0.59385	1	13806	13806		14.425	1.4222	1	189250			2035	5609	1172	1193	1573	1573					-0.10509557591308294
DEFDCPSEL	9	Unmodified	_DEFDCPSEL_					0	0	0		STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant;nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1;nc|ENSG00000105889|Q6NZ63-2|STEAP1B	STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7053222561	2	527.705322	1053.39609	0.90104	0.00047548	-6.2396	-0.0032927	-5.3386	-0.0028172	528.2032662775823	22.091	0.1205	22.077	22.029	22.149	-0.013731	1341	85	0.8117308	0.051718056	0.81021136	329.3828	0	20.986084						263	6	3	NaN	NaN	NaN	0.36492	1	10540	10540		15.175	2.1725	1	28540			2036	1573	1173	1194	1574	1574					-0.1284706231265318
DEFDCPSEL	9	Unmodified						0	0	0		STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant;nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1;nc|ENSG00000105889|Q6NZ63-2|STEAP1B	STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	STEAP1|p.V220Dfs*25|1|0.08|ENSG00000164647|chr7:90161974-90161975|-/ACTT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.705322	1053.39609	1.6735	0.00088312	-6.238	-0.0032918	-4.5645	-0.0024087	528.2024859165094	22.091	0.14479	22.091	22.043	22.187	0	1344	73	0.8098828	0.04433459	0.8098828	328.63293		17.99002	0.0070468	8.9339E-07	-0.00016427	NaN	15.175	200	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18424			2037	1573	1173	1194							-0.1284706231265318
DEFEKIYKNAW	11	Unmodified	_DEFEKIYKNAW_					0	0	0		ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L;ENSG00000211456|ENST00000389061|SACM1L	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.8511667513501	2	721.851167	1441.68778	1.0707	0.00077287	-4.4598	-0.0032193	-3.3892	-0.0024465	721.8467707638083	20.766	0.04821	20.752	20.728	20.776	-0.014086	1077	73	0.9735726	0.043905735	0.9720532	393.67865	0	17.753967						126	3	3	NaN	NaN	NaN	0.63477	1	19364	19364		11.739	7.4287	1	8775.5			2038	5947	1174	1195	1575	1575					-0.015395809561823626
DEFEKIYKNAW	11	Unmodified						0	0	0		ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L;ENSG00000211456|ENST00000389061|SACM1L	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	721.851167	1441.68778	1.0599	0.00076507	-6.4467	-0.0046535	-5.3868	-0.0038885	721.8467417810547	20.742	0.048237	20.742	20.718	20.766	0	1080	70	0.9717421	0.042087674	0.9717421	392.93848		17.018768	-0.0051627	-0.0013053	-0.00015553	NaN	11.739	106	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9894.5			2039	5947	1174	1195							-0.015395809561823626
DEFFAIIL	8	Unmodified	_DEFFAIIL_					0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.5135108425001	1	967.513511	966.506234	0.95593	0.00092487	-3.7336	-0.0036123	-2.7777	-0.0026874	967.5110623609207	33.552	0.14467	33.552	33.504	33.648	0	279	70	1.4535767	0.040911198	1.4535767	295.26117	0	8.31015						150	7	2	NaN	NaN	NaN	0.80071	1	7523	7523		9.1232	0	1	11226			2040	7864	1175	1196	1576	1576					0.021641508087100192
DEFFAIIL	8	Unmodified						0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	967.513511	966.506234	0.60967	0.00058987	-4.6956	-0.004543	-4.0859	-0.0039532	967.5084154878789	33.551	0.072422	33.549	33.525	33.597	-0.0018463	273	67	1.4571344	0.03913033	1.4556149	295.98383		7.9484253	-0.0015914	-0.00032967	0.0010191	NaN	9.1232	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8365.6			2041	7864	1175	1196							0.021641508087100192
DEFYGLAGMP	10	Unmodified	_DEFYGLAGMP_					0	0	0		ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	ENSG00000180423|ENST00000326737|HARBI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.4764734091998	1	1099.47647	1098.4692	1.3423	0.0014758	-9.1887	-0.010103	-7.8464	-0.008627	1099.4659875717937	32.296	0.24134	32.292	32.196	32.437	-0.0037613	147	82	1.5316714	0.047792196	1.530152	310.5985	0	9.691528						245	11	2	NaN	NaN	NaN	0.71736	1	12436	12436		6.8632	0.613	1	18817			2042	5194	1176	1197	1577	1577					-0.07609888799379405
DEHVASLVW	9	Unmodified	_DEHVASLVW_					0	0	0		ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.26145628705	2	528.261456	1054.50836	1.5239	0.00080502	2.938	0.001552	4.4619	0.002357	528.7636802607004	17.066	0.096075	17.053	17.029	17.125	-0.013294	1275	52	0.85233563	0.031344235	0.8508162	345.8546	0	12.718658						126	5	3	NaN	NaN	NaN	0.62619	1	10604	10604		4.4131	0.44458	1	8643.4			2043	2165	1177	1198	1578	1578					-0.016714204534764576
DEHVLIGLYVN	11	Unmodified	_DEHVLIGLYVN_					0	0	0		nc|ENSG00000134769|Q9Y4J8-11|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;ENSG00000134769|ENST00000444659|DTNA	nc|ENSG00000134769|Q9Y4J8-11|DTNA	nc|ENSG00000134769|Q9Y4J8-11|DTNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.3351525464001	2	636.335153	1270.65575	1.0907	0.00069406	5.79	0.0036844	6.8807	0.0043784	636.3389831268838	30.922	0.096493	30.922	30.873	30.97	0	1131	55	0.94059354	0.03301108	0.94059354	380.8292	0	13.36557						163	5	4	NaN	NaN	NaN	0.69801	1	18251	18251		7.5876	1.1577	1	22992			2044	2895	1178	1199	1579	1579					0.031250513606664754
DEIADAIEM	9	Unmodified	_DEIADAIEM_					0	0	0			REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4397535519	1	1006.43975	1005.43248	1.3891	0.001398	1.9857	0.0019985	3.3748	0.0033965	1006.4422519186273	24.285	0.048267	24.285	24.285	24.333	0	267	67	1.4606913	0.039117813	1.4606913	296.5448	0	7.941559						89	3	2	NaN	NaN	NaN	0.094712	1	8781	8781		36.586	13.252	1	7751.5	+		2045	12269	1179	1200	1580	1580					-0.07002185415922213
DEIADAIEM	9	Unmodified						0	0	0			REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1006.43975	1005.43248	1.3891	0.001398	1.9857	0.0019985	3.3748	0.0033965	1006.4422519186273	24.285	0.048267	24.285	24.285	24.333	0	267	67	1.4606913	0.039117813	1.4606913	296.5448		7.941559	-0.0055563	0.001618	-0.0019073	NaN	36.586	89	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7751.5	+		2046	12269	1179	1200							-0.07002185415922213
DEIADAIEM	9	Unmodified						0	0	0			REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1006.43975	1005.43248	1.8207	0.0018324	-1.1933	-0.0012009	0.6274	0.00063144	1006.4385271300595	24.309	0.096563	24.296	24.248	24.344	-0.012749	258	46	1.4660252	0.02667272	1.4645058	297.62772		5.4150085	0.0055563	-0.0015815	0.0019073	NaN	36.586	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6301.2	+		2047	12269	1179	1200							-0.07002185415922213
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.8825594715	3	416.882559	1247.62585	1.6832	0.00070168	-1.754	-0.00073122	-0.070851	-2.9536E-05	416.8814911332192	19.54	0.096004	19.54	19.54	19.636	0	1392	34	0.780288	0.020365238	0.780288	473.97647	0	12.370605						92	5	3	NaN	NaN	NaN	0.44296	1	17720	17720		14.959	7.6701	1	10581			2048	1256	1180	1201	1581	1581					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.82020097395	2	624.820201	1247.62585	1.2214	0.00076312	-1.9585	-0.0012237	-0.73718	-0.0004606	624.8190517469169	19.587	0.096289	19.573	19.524	19.621	-0.014141	1137	43	0.9369253	0.025683582	0.93540585	379.41928	0	10.400879						75	5	2	NaN	NaN	NaN	0.33431	1	16976	16976		24.4	14.04	1	9000.5			2049	1256	1180	1201	1582	1582					0.011941124153281635
DEIDAIGGRRF	11	Unmodified	_DEIDAIGGRRF_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.8825594715	3	416.882559	1247.62585	1.3435	0.00056008	-1.7728	-0.00073907	-0.42936	-0.00017899	416.8818902731354	19.563	0.072216	19.549	19.549	19.621	-0.014141	1395	28	0.7784366	0.016662419	0.77691716	472.85187	0	10.121399						63	4	2	NaN	NaN	NaN	0.33431	1	16977	16977		22.269	12.065	1	9451.9			2050	1256	1180	1201	1583	1583					0.011941124153281635
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.89809808536666	3	455.898098	1364.67246	1.6521	0.00075319	-1.5329	-0.00069884	0.11922	5.4351E-05	455.89740497073313	18.053	0.16789	18.053	18.005	18.173	0	1431	40	0.75620437	0.024101853	0.75620437	458.91635	0	14.626678						256	8	4	NaN	NaN	NaN	0.10301	1	19742	19742		38.578	29.636	1	57358			2051	1552	1181	1202	1584	1584					0.004715522466085531
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.34350889475	2	683.343509	1364.67246	2.2774	0.0015563	1.3246	0.00090518	3.602	0.0024614	683.8455745227388	18.053	0.071934	18.053	18.029	18.101	0	1074	43	0.9754029	0.025625527	0.9754029	394.63022	0	10.367615						87	4	3	NaN	NaN	NaN	0.076066	1	19743	19743		49.26	27.489	1	5176			2052	1552	1181	1202	1585	1585					0.004715522466085531
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.34350889475	2	683.343509	1364.67246	2.4473	0.0016724	-1.9897	-0.0013596	0.45766	0.00031274	683.341630536137	18.146	0.072029	18.132	18.108	18.18	-0.013948	1074	40	0.9754029	0.023793817	0.97388345	394.63022	0	9.626526						76	4	2	NaN	NaN	NaN	0.69669	1	18820	18820		8.2775	3.9674	1	5944.7			2053	1552	1181	1202	1586	1586					0.004715522466085531
DEIERKFDKW	10	Unmodified	_DEIERKFDKW_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.89809808536666	3	455.898098	1364.67246	1.8619	0.00084885	-0.95154	-0.00043381	0.91038	0.00041504	455.8977938883094	18.146	0.312	18.132	18.084	18.396	-0.013948	1431	46	0.75620437	0.027809858	0.7546849	458.91635	0	16.876923						285	14	3	NaN	NaN	NaN	0.013488	1	18821	18821		56.615	35.378	1	64105			2054	1552	1181	1202	1587	1587					0.004715522466085531
DEIKTQFEN	9	Unmodified	_DEIKTQFEN_					0	0	0		tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2669355954501	2	562.266936	1122.51932	2.0634	0.0011602	-7.2575	-0.0040807	-5.1941	-0.0029205	562.7650954876964	30.004	0.072403	30.004	29.956	30.029	0	1215	49	0.8891654	0.029441535	0.8891654	360.51727	0	11.937225						62	4	2	NaN	NaN	NaN	0.40649	1	13781	13781		13.463	0.46021	1	3898.7			2055	13877	1182	1203	1588	1588					-0.037040628698377986
DEIKTQFEN	9	Unmodified						0	0	0		tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.266936	1122.51932	1.1529	0.00064824	-7.8451	-0.0044111	-6.6922	-0.0037628	562.2637084975191	29.786	0.07239	29.779	29.731	29.803	-0.0070648	1233	70	0.87812483	0.042333663	0.8766054	356.0408		17.164398	-0.11257	-0.00022298	-0.00628	NaN	13.463	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10822			2056	13877	1182	1203							-0.037040628698377986
DELGRELALH	10	Unmodified	_DELGRELALH_					0	0	0			REV__ENST00000461756.1_1_17:37899195-37899563:+|nuORF	REV__ENST00000461756.1_1_17:37899195-37899563:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8040195935	2	576.80402	1151.59349	0.93863	0.00054141	-10.194	-0.0058797	-9.2549	-0.0053383	576.7975695855739	33.238	0.096531	33.238	33.214	33.311	0	1206	46	0.894683	0.02758205	0.894683	362.6433	0	11.179871						136	5	3	NaN	NaN	NaN	0.62092	1	14863	14863		13.463	2.8581	1	14707	+		2057	9833	1183	1204	1589	1589					0.02375325012326357
DELGRELALH	10	Unmodified						0	0	0			REV__ENST00000461756.1_1_17:37899195-37899563:+|nuORF	REV__ENST00000461756.1_1_17:37899195-37899563:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.80402	1151.59349	0.93863	0.00054141	-10.194	-0.0058797	-9.2549	-0.0053383	576.7975695855739	33.238	0.096531	33.238	33.214	33.311	0	1206	46	0.894683	0.02758205	0.894683	362.6433		11.179871	0.0018954	-0.00039605	-0.00015968	NaN	13.463	136	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14707	+		2058	9833	1183	1204							0.02375325012326357
DELHSGSTLL	10	Unmodified	_DELHSGSTLL_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2694782844002	2	536.269478	1070.5244	1.9452	0.0010431	4.8821	0.0026181	6.8273	0.0036613	536.2724099050095	22.284	0.048267	22.284	22.284	22.332	0	1257	55	0.86339295	0.033171892	0.86339295	350.2738	0	13.457642						66	3	2	NaN	NaN	NaN	0.62764	1	11581	11581		13.003	0	1	24533	+		2059	11304	1184	1205	1590	1590					-0.008037590072035528
DELHSGSTLL	10	Unmodified						0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.269478	1070.5244	1.9452	0.0010431	4.8821	0.0026181	6.8273	0.0036613	536.2724099050095	22.284	0.048267	22.284	22.284	22.332	0	1257	55	0.86339295	0.033171892	0.86339295	350.2738		13.457642	-0.0050066	-0.002233	0.0016809	NaN	13.003	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24533	+		2060	11304	1184	1205							-0.008037590072035528
DELHSGSTLL	10	Unmodified						0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.269478	1070.5244	0.88752	0.00047595	9.3068	0.0049909	10.194	0.0054669	536.2750029892862	22.308	0.024084	22.294	22.294	22.318	-0.013731	1260	49	0.8615505	0.02948296	0.8600311	349.52634		11.96106	0.0050066	0.0025127	-0.0016809	NaN	13.003	51	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20179	+		2061	11304	1184	1205							-0.008037590072035528
DELIGQKV	8	Unmodified	_DELIGQKV_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4989234108001	1	901.498923	900.491647	1.8101	0.0016318	-4.121	-0.0037151	-2.3109	-0.0020833	901.4973274390655	26.577	0.12068	26.577	26.529	26.65	0	327	97	1.425088	0.057080507	1.425088	289.77243	0	11.606537						131	6	2	NaN	NaN	NaN	0.65075	1	6093	6093		22.126	0	1	11755			2062	1826	1185	1206	1591	1591					0.03742078660570769
DELLCTCIEM	10	Unmodified	_DELLCTCIEM_					0	0	0		ENST00000482857.5_1_2:33740203-33741790:+|nuORF;RASGRP3|p.D308Rfs*32|1|0.23|ENSG00000152689|chr2:33527247-33527248|-/A|frameshift_variant;nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3	ENST00000482857.5_1_2:33740203-33741790:+|nuORF	ENST00000482857.5_1_2:33740203-33741790:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2479854105	2	585.247985	1168.48142	2.406	0.0014081	-1.3099	-0.00076659	1.0962	0.00064152	585.2478292194828	25.129	0.21717	25.129	25.057	25.274	0	1197	112	0.9001988	0.068050504	0.9001988	364.8166	0	27.578278						819	10	6	NaN	NaN	NaN	0.17937	1	15421	15421		37.302	2.8636	1	350840			2063	3784	1186	1207	1592	1592					-0.09608356442845434
DELTQKKKM	9	Unmodified	_DELTQKKKM_					0	0	0		nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2	nc|ENSG00000165923|Q5U5Z8-3|AGBL2	nc|ENSG00000165923|Q5U5Z8-3|AGBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8051736864501	2	560.805174	1119.59579	1.5345	0.00086053	0.36035	0.00020209	1.8948	0.0010626	560.8051774858575	29.618	0.096531	29.618	29.618	29.715	0	1173	64	0.91489893	0.038552344	0.91489893	370.9628	0	15.631775						99	5	2	NaN	NaN	NaN	0.68136	1	13658	13658		0.79988	0	1	11947			2064	18	1187	1208	1593	1593					0.04078037425779257
DELTQKKKM	9	Unmodified						0	0	0		nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2	nc|ENSG00000165923|Q5U5Z8-3|AGBL2	nc|ENSG00000165923|Q5U5Z8-3|AGBL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.805174	1119.59579	1.3261	0.00074368	0.4176	0.00023419	1.7437	0.00097787	560.8057939081743	29.762	0.07239	29.755	29.731	29.803	-0.0070667	1182	34	0.9093879	0.020202816	0.90786844	368.72824		8.191589	0.068432	4.1182E-05	-0.0035152	NaN	0.79988	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6536.5			2065	18	1187	1208							0.04078037425779257
DELVHGYIL	9	Unmodified	_DELVHGYIL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55003624-55004065:+|nuORF	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7794818647001	2	529.779482	1057.54441	1.4968	0.00079297	-10.151	-0.0053776	-8.6538	-0.0045846	530.2775492802264	24.743	0.12065	24.743	24.671	24.791	0	1266	79	0.85786515	0.047899425	0.85786515	348.08554	0	19.435577						196	6	3	NaN	NaN	NaN	0.42773	1	10989	10989		12.588	1.0394	1	21154			2066	1279	1188	1209	1594	1594					0.017940367233904908
DELYDSLEMY	10	Unmodified	_DELYDSLEMY_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000534273.1_1_11:65988146-65988913:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.2657439647	2	639.265744	1276.51693	1.2922	0.00082606	6.9091	0.0044167	8.2013	0.0052428	639.2702278236749	32.296	0.33781	32.292	32.148	32.485	-0.0037613	1143	73	0.9332562	0.044038475	0.93173677	377.83978	0	17.829498						404	15	4	NaN	NaN	NaN	0.47601	1	17528	17528		20.449	3.5904	1	56382			2067	4982	1189	1210	1595	1595					-0.11026279389830052
DEMADFYE	8	Unmodified	_DEMADFYE_					0	0	0			REV__nc|ENSG00000184792|Q969R2-4|OSBP2	REV__nc|ENSG00000184792|Q969R2-4|OSBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.3662542577999	1	1019.36625	1018.35898	1.9728	0.002011	-1.3779	-0.0014045	0.59493	0.00060645	1019.364265565005	22.886	0.12058	22.872	22.824	22.945	-0.01354	261	43	1.4642475	0.024890542	1.462728	297.21573	0	5.0523376						108	6	2	NaN	NaN	NaN	0.72043	1	9113	9113		17.78	8.6571	1	9230.7	+		2068	10935	1190	1211	1596	1596					-0.1494673385840315
DENDHSILS	9	Unmodified	_DENDHSILS_					0	0	0			REV__ENSG00000180806|ENST00000303450|HOXC9	REV__ENSG00000180806|ENST00000303450|HOXC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2278104349501	2	515.22781	1028.44107	2.1308	0.0010978	1.3274	0.00068389	3.4581	0.0017817	515.228231053499	25.322	0.096472	25.322	25.274	25.371	0	1305	28	0.83389086	0.016611993	0.83389086	338.48077	0	6.7428894						77	5	3	NaN	NaN	NaN	0.59509	1	9696	9696		5.6942	0.78442	1	6169.5	+		2069	10834	1191	1212	1597	1597					-0.07201495455069562
DENEFLEIV	9	Unmodified	_DENEFLEIV_					0	0	0		tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2638615902499	2	554.263862	1106.51317	1.1977	0.00066382	-1.0654	-0.0005905	0.13228	7.3317E-05	554.2631444733892	24.598	0.072401	24.586	24.562	24.634	-0.012394	1230	70	0.8799654	0.042315364	0.878446	356.84964	0	17.160004						132	4	2	NaN	NaN	NaN	0.34922	1	12751	12751		15.822	2.3589	1	29122			2070	13898	1192	1213	1598	1598					-0.035825811014092324
DEPFSGSV	8	Unmodified	_DEPFSGSV_					0	0	0			REV__nc|ENSG00000079950|O15400-2|STX7	REV__nc|ENSG00000079950|O15400-2|STX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.18488298775003	2	419.184883	836.355213	0.78827	0.00033043	-3.725	-0.0015615	-2.9367	-0.001231	419.1833557256216	37.07	0.19253	37.072	36.976	37.169	0.0022469	1431	37	0.75620437	0.022246659	0.7546849	307.87668	0	9.057404						160	9	3	NaN	NaN	NaN	0.84455	1	5087	5087		2.7852	1.3456	1	17226	+		2071	8646	1193	1214	1599	1599					-0.06951035569932174
DEPFSGSV	8	Unmodified						0	0	0			REV__nc|ENSG00000079950|O15400-2|STX7	REV__nc|ENSG00000079950|O15400-2|STX7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	419.184883	836.355213	1.487	0.00062332	-6.7901	-0.0028463	-5.3031	-0.002223	419.1823984262754	36.808	0.072205	36.808	36.784	36.856	0	1437	28	0.7524962	0.016687691	0.7524962	306.36697		6.7941284	-0.13225	-0.0021809	-0.0010944	NaN	2.7852	41	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2995.8	+		2072	8646	1193	1214							-0.06951035569932174
DEPFSGSV	8	Unmodified						0	0	0			REV__nc|ENSG00000079950|O15400-2|STX7	REV__nc|ENSG00000079950|O15400-2|STX7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	419.184883	836.355213	0.78827	0.00033043	-3.725	-0.0015615	-2.9367	-0.001231	419.1833557256216	37.07	0.19253	37.072	36.976	37.169	0.0022469	1431	37	0.75620437	0.022246659	0.7546849	307.87668		9.057404	0.13225	0.00038877	0.0010944	NaN	2.7852	160	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17226	+		2073	8646	1193	1214							-0.06951035569932174
DEPKLERR	8	Unmodified	_DEPKLERR_					0	0	0		ENST00000438308.1_1_X:65294991-65295039:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF;nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	ENST00000438308.1_1_X:65294991-65295039:-|nuORF	ENST00000438308.1_1_X:65294991-65295039:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7856298751	2	521.78563	1041.55671	1.4769	0.00077061	-8.869	-0.0046277	-7.3922	-0.0038571	521.7807598501195	19.779	0.096292	19.765	19.717	19.813	-0.014141	1254	64	0.8652351	0.038698435	0.86371565	351.1452	0	15.705292						181	5	4	NaN	NaN	NaN	0.72013	1	10073	10073		17.799	0	1	21385			2074	656	1194	1215	1600	1600					0.037590731864156623
DEPTLDVIE	9	Unmodified	_DEPTLDVIE_					0	0	0		nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4938976123997	1	1030.4939	1029.48662	1.4302	0.0014738	-2.1188	-0.0021834	-0.68855	-0.00070954	1030.4923814220224	20.718	0.096458	20.718	20.694	20.79	0	252	49	1.4695803	0.028431177	1.4695803	298.25513	0	5.7702026						131	5	3	NaN	NaN	NaN	0.094712	1	9747	9747		36.586	0	1	10927			2075	1328	1195	1216	1601	1601					-0.026942699927303693
DEPTLPPFI	9	Unmodified	_DEPTLPPFI_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7685828274	2	514.768583	1027.52261	1.9923	0.0010256	4.9867	0.002567	6.979	0.0035926	514.7707780414856	29.787	0.1207	29.787	29.763	29.884	0	1320	85	0.824661	0.0516845	0.824661	334.73825	0	20.979248						176	6	2	NaN	NaN	NaN	0.049695	1	9673	9673		47.04	8.1223	1	20510			2076	560	1196	1217	1602	1602					0.009952319747981164
DEPTLPPFI	9	Unmodified	_DEPTLPPFI_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7685828274	2	514.768583	1027.52261	0.97775	0.00050331	4.8566	0.0025	5.8343	0.0030033	514.7712922615336	29.714	0.28954	29.707	29.61	29.9	-0.0070648	1290	94	0.84311575	0.05720669	0.8415963	342.22922	0	23.220764						434	13	2	NaN	NaN	NaN	0.20577	1	9484	9484		24.961	4.4056	1	58137			2077	560	1196	1217	1603	1603					0.009952319747981164
DEPVLEVDL	9	Unmodified	_DEPVLEVDL_					0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.76095476055	2	514.760955	1027.50736	1.4117	0.00072671	3.8232	0.001968	5.2349	0.0026947	514.7627560962516	36.131	0.072254	36.132	36.108	36.181	0.0011024	1275	67	0.85233563	0.04056537	0.8508162	345.97174	0	16.465881						116	4	3	NaN	NaN	NaN	0.61413	1	9478	9478		4.9097	0	1	6938.6	+		2078	9494	1197	1218	1604	1604					-0.005296796130551229
DEPVLEVDL	9	Unmodified						0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.760955	1027.50736	1.6728	0.00086108	2.4815	0.0012774	4.1543	0.0021385	514.7615998015578	36.133	0.12062	36.133	36.109	36.229	0	1263	70	0.85970795	0.042411506	0.85970795	348.96426		17.215271	0.0002668	-0.00076075	0.0044459	NaN	4.9097	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7856	+		2079	9494	1197	1218							-0.005296796130551229
DEPVLEVDL	9	Unmodified						0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.760955	1027.50736	1.4117	0.00072671	3.8232	0.001968	5.2349	0.0026947	514.7627560962516	36.131	0.072254	36.132	36.108	36.181	0.0011024	1275	67	0.85233563	0.04056537	0.8508162	345.97174		16.465881	-0.0002668	0.00062055	-0.0044459	NaN	4.9097	116	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6938.6	+		2080	9494	1197	1218							-0.005296796130551229
DEQIIIFPS	9	Unmodified	_DEQIIIFPS_					0	0	0		nc|ENSG00000243710|Q96MR6-2|CFAP57;ENSG00000243710|ENST00000372492|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2793146892	2	531.279315	1060.54408	0.64623	0.00034333	1.2593	0.00066906	1.9056	0.0010124	531.2800305663644	29.835	0.24129	29.828	29.707	29.948	-0.0070667	1242	91	0.87260187	0.055256605	0.8710824	354.05215	0	22.419983						277	11	3	NaN	NaN	NaN	0.18779	1	10879	10879		26.115	4.28	1	47760			2081	6087	1198	1219	1605	1605					0.016226170034997267
DERRRVEELLQ	11	Unmodified	_DERRRVEELLQ_					0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.8891462064001	2	721.889146	1441.76374	3.1326	0.0022614	-0.2352	-0.00016979	2.8974	0.0020916	721.8887396712146	25.588	0.024101	25.576	25.576	25.6	-0.0116	1002	25	1.0192708	0.014603853	1.0177513	412.1572	0	5.9052734						29	2	2	NaN	NaN	NaN	0.72342	1	19365	19365		5.9198	1.1907	1	1952.3	+		2082	11030	1199	1220	1606	1606					0.060528159439627416
DERRRVEELLQ	11	Unmodified						0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	721.889146	1441.76374	1.8171	0.0013118	0.21216	0.00015315	2.0293	0.0014649	721.8887125222847	25.588	0.048208	25.588	25.564	25.612	0	1002	49	1.0192708	0.029216886	1.0192708	412.1572		11.814331	0.0058899	0.00020611	0.00075972	NaN	5.9198	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4130.4	+		2083	11030	1199	1220							0.060528159439627416
DERRRVEELLQ	11	Unmodified						0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	721.889146	1441.76374	3.1326	0.0022614	-0.2352	-0.00016979	2.8974	0.0020916	721.8887396712146	25.588	0.024101	25.576	25.576	25.6	-0.0116	1002	25	1.0192708	0.014603853	1.0177513	412.1572		5.9052734	-0.0058899	-0.00043977	-0.00075972	NaN	5.9198	29	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1952.3	+		2084	11030	1199	1220							0.060528159439627416
DESDPELFSQI	11	Unmodified	_DESDPELFSQI_					0	0	0		nc|ENSG00000130822|Q6P2M8-5|PNCK;ENST00000472324.5_1_X:152935914-152936728:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.28806496805	2	640.288065	1278.56158	2.0232	0.0012955	-9.4162	-0.0060291	-7.393	-0.0047336	640.282595110349	25.178	0.1689	25.178	25.129	25.298	0	1152	82	0.92775106	0.049535275	0.92775106	375.6046	0	20.054596						352	8	4	NaN	NaN	NaN	0.4078	1	18387	18387		21.771	6.3084	1	50769			2085	7943;7944	1200	1221	1607	1607					-0.06656132252146563
DESDPELFSQI	11	Unmodified						0	0	0		nc|ENSG00000130822|Q6P2M8-5|PNCK;ENST00000472324.5_1_X:152935914-152936728:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.288065	1278.56158	2.1677	0.0013879	-9.1909	-0.0058848	-7.0232	-0.0044969	640.2827652958669	25.201	0.16887	25.189	25.141	25.31	-0.012011	1152	70	0.92775106	0.0422104	0.9262317	375.6046		17.08908	0.0059424	0.0001328	-0.00075972	NaN	21.771	338	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47038			2086	7943;7944	1200	1221							-0.06656132252146563
DESPYSHW	8	Unmodified	_DESPYSHW_					0	0	0			REV__CBX1|p.R167K|1|0.39|ENSG00000108468|chr17:48071493-48071493|C/T|missense_variant	REV__CBX1|p.R167K|1|0.39|ENSG00000108468|chr17:48071493-48071493|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.70651388684996	2	510.706514	1019.39847	2.5784	0.0013168	-5.3281	-0.0027211	-2.7497	-0.0014043	510.70325890615544	18.556	0.095936	18.556	18.508	18.604	0	1302	31	0.8357362	0.01845473	0.8357362	339.2696	0	7.4917603						56	5	2	NaN	NaN	NaN	0.84692	1	9332	9332		1.4396	0.19772	1	4291.7	+		2087	8179	1201	1222	1608	1608					-0.11044845792662272
DETEGPLNEFE	11	Unmodified	_DETEGPLNEFE_					0	0	0			REV__TTBK2|p.E779D|1|0.28|ENSG00000128881|chr15:42752909-42752909|C/G|missense_variant	REV__TTBK2|p.E779D|1|0.28|ENSG00000128881|chr15:42752909-42752909|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.2698722148999	2	640.269872	1278.52519	1.7524	0.001122	-5.0851	-0.0032558	-3.3326	-0.0021338	640.2666031428263	14.764	0.14402	14.752	14.68	14.824	-0.011738	1170	40	0.91673553	0.023873508	0.9152161	371.145	0	9.665314						121	7	3	NaN	NaN	NaN	0.33431	1	17564	17564		24.4	0.0068447	1	8292	+		2088	13642	1202	1223	1609	1609					-0.102930091488588
DEVFERWF	8	Unmodified	_DEVFERWF_					0	0	0			REV__ENST00000348160.8_1_4:26322496-26387983:+|nuORF	REV__ENST00000348160.8_1_4:26322496-26387983:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.26145628705	2	564.261456	1126.50836	2.1222	0.0011975	-3.8413	-0.0021675	-1.7191	-0.00097004	564.2597531746216	26.408	0.048271	26.408	26.384	26.432	0	1257	73	0.86339295	0.044186175	0.86339295	350.0526	0	17.914795						78	3	2	NaN	NaN	NaN	0.77489	1	13949	13949		12.588	1.9829	1	8106.3	+		2089	11801	1203	1224	1610	1610					-0.04983420453481813
DEWRHRLQSLW	11	Unmodified	_DEWRHRLQSLW_					0	0	0			REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	REV__DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.26014130733336	3	509.260141	1524.75859	1.037	0.0005281	-4.2627	-0.0021708	-3.2257	-0.0016427	509.59228274368235	26.915	0.14484	26.904	26.832	26.976	-0.010645	1395	37	0.7784366	0.022215366	0.77691716	471.91138	0	13.46759						101	7	2	NaN	NaN	NaN	0.75857	1	19626	19626		3.6122	0	1	9457.6	+		2090	8319	1204	1225	1611	1611					0.017205568719873554
DFATWLLCL	9	Unmodified	_DFATWLLCL_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2729781010501	2	541.272978	1080.5314	1.468	0.00079459	-4.4079	-0.0023859	-2.9399	-0.0015913	541.2699286943038	21.175	0.31308	21.175	21.007	21.32	0	1254	76	0.8652351	0.046069622	0.8652351	350.9799	0	18.687988						259	14	2	NaN	NaN	NaN	0.12945	1	12000	12000		31.561	3.7722	1	38255	+		2091	10170	1205	1226	1612	1612					-0.005641176603603526
DFATWLLCL	9	Unmodified						0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.272978	1080.5314	1.468	0.00079459	-4.4079	-0.0023859	-2.9399	-0.0015913	541.2699286943038	21.175	0.31308	21.175	21.007	21.32	0	1254	76	0.8652351	0.046069622	0.8652351	350.9799		18.687988	-0.0051538	0.00016913	0.0016808	NaN	31.561	259	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38255	+		2092	10170	1205	1226							-0.005641176603603526
DFATWLLCL	9	Unmodified						0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.272978	1080.5314	1.1698	0.00063319	-4.6995	-0.0025437	-3.5297	-0.0019105	541.7723675391901	21.2	0.31297	21.186	20.945	21.258	-0.014004	1257	73	0.86339295	0.044219613	0.8618735	350.23264		17.93753	0.0051538	-0.00014655	-0.0016808	NaN	31.561	323	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35317	+		2093	10170	1205	1226							-0.005641176603603526
DFDIAADL	8	Unmodified	_DFDIAADL_					0	0	0			REV__ENST00000527247.5_1_11:126099171-126110978:+|nuORF	REV__ENST00000527247.5_1_11:126099171-126110978:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4094397015	1	879.40944	878.402163	0.97547	0.00085783	-0.69614	-0.0006122	0.27932	0.00024564	879.4091921492538	30.341	0.14474	30.335	30.263	30.407	-0.0064106	405	49	1.3786905	0.028591871	1.377171	280.44418	0	5.8159485						123	7	2	NaN	NaN	NaN	0.23746	1	5651	5651		47.04	5.5801	1	12494	+		2094	11162	1206	1227	1613	1613					-0.04190176018812508
DFDMTLSRF	9	Unmodified	_DFDMTLSRF_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2605990073001	2	566.260599	1130.50665	1.6546	0.00093692	1.3658	0.0007734	3.0204	0.0017103	566.2609288258162	27.446	0.096556	27.446	27.422	27.519	0	1227	64	0.88180584	0.038648307	0.88180584	357.5026	0	15.668823						113	5	2	NaN	NaN	NaN	0.13196	1	14094	14094		31.198	10.749	1	27851			2095	2333	1207	1228	1614	1614					-0.05338797533727302
DFDMTLSRF	9	Unmodified	_DFDMTLSRF_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2605990073001	2	566.260599	1130.50665	0.97327	0.00055113	5.5708	0.0031545	6.544	0.0037056	566.7680923668114	27.47	0.14478	27.46	27.412	27.557	-0.0095501	1224	64	0.883646	0.038648307	0.88212657	358.24863	0	15.668793						153	7	2	NaN	NaN	NaN	0.16939	1	13635	13635		27.296	12.871	1	30870			2096	2333	1207	1228	1615	1615					-0.05338797533727302
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.75293276319996	2	506.752933	1011.49131	0.93036	0.00047146	-2.478	-0.0012557	-1.5476	-0.00078425	506.75135328678164	33.624	0.096558	33.624	33.6	33.697	0	1356	55	0.8024889	0.033268988	0.8024889	325.80664	0	13.507019						158	5	4	NaN	NaN	NaN	0.04947	1	9029	9029		47.136	23.801	1	18801			2097	4878	1208	1229	1616	1616					-0.013973410592939217
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4985890598	1	1012.49859	1011.49131	1.562	0.0015815	0.88008	0.00089108	2.442	0.0024726	1012.4997812226521	33.624	0.26537	33.624	33.576	33.842	0	198	157	1.5015416	0.09235263	1.5015416	304.81342	0	18.74762						921	12	4	NaN	NaN	NaN	0.014046	1	9035	9035		80.639	38.854	1	353690			2098	4878	1208	1229	1617	1617					-0.013973410592939217
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.75293276319996	2	506.752933	1011.49131	0.40517	0.00020532	-0.26117	-0.00013235	0.144	7.2974E-05	506.7525851436647	33.623	0.12064	33.621	33.573	33.694	-0.0018501	1353	79	0.8043377	0.04803437	0.80281824	326.55722	0	19.501709						192	6	3	NaN	NaN	NaN	0.021105	1	8856	8856		70.6	42.811	1	23073			2099	4878	1208	1229	1618	1618					-0.013973410592939217
DFDVAVVTF	9	Unmodified	_DFDVAVVTF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4985890598	1	1012.49859	1011.49131	1.3791	0.0013963	0.7672	0.00077679	2.1463	0.0021731	1012.4991385616017	33.623	0.24133	33.621	33.573	33.814	-0.0018501	195	127	1.5033154	0.07454491	1.501796	305.17352	0	15.132629						789	11	4	NaN	NaN	NaN	0.021105	1	8861	8861		70.6	28.815	1	318640			2100	4878	1208	1229	1619	1619					-0.013973410592939217
DFDVPFEM	8	Unmodified	_DFDVPFEM_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.4128105199001	1	999.412811	998.405534	1.4834	0.0014825	0.42071	0.00042046	1.9041	0.001903	999.4136461147663	35.82	0.14465	35.82	35.795	35.94	0	255	46	1.4678029	0.026655674	1.4678029	298.01697	0	5.412079						95	7	2	NaN	NaN	NaN	0.6053	1	8506	8506		24.961	5.7974	1	6097.9			2101	5717	1209	1230	1620	1620					-0.09373249236443826
DFDVPFEM	8	Unmodified						0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	999.412811	998.405534	1.4866	0.0014857	-0.045731	-4.5704E-05	1.4408	0.00144	999.4135680810724	35.842	0.072296	35.843	35.794	35.867	0.00053024	252	46	1.4695803	0.026655674	1.4680609	298.37784		5.412079	0.011535	-0.00013827	0.00012899	NaN	24.961	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5900.7			2102	5717	1209	1230							-0.09373249236443826
DFESVEST	8	Unmodified	_DFESVEST_					0	0	0		FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.3785335036001	1	913.378534	912.371257	1.4189	0.001296	-2.6274	-0.0023999	-1.2085	-0.0011038	913.3763627854631	30.1	0.09654	30.094	30.045	30.142	-0.0064106	378	58	1.3947657	0.033929467	1.3932463	283.5512	0	6.8977356						97	5	2	NaN	NaN	NaN	0.72043	1	6149	6149		17.78	4.0433	1	9056.8			2103	3971	1210	1231	1621	1621					-0.08843374123694048
DFETKYSTSF	10	Unmodified	_DFETKYSTSF_					0	0	0			REV__ITGAL|p.R666Pfs*34|1|0.1|ENSG00000005844|chr16:30499341-30499341|G/-|frameshift_variant	REV__ITGAL|p.R666Pfs*34|1|0.1|ENSG00000005844|chr16:30499341-30499341|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.77459345205	2	612.774593	1223.53463	0.62547	0.00038327	-6.1225	-0.0037517	-5.497	-0.0033684	613.2725615214518	27.108	0.12066	27.098	27.025	27.146	-0.010126	1188	79	0.90571284	0.047765017	0.9041934	366.8585	0	19.347198						136	6	2	NaN	NaN	NaN	0.58645	1	16362	16362		15.822	2.8191	1	16354	+		2104	8364	1211	1232	1622	1622					-0.06819196072660816
DFEWLKQC	8	Unmodified	_DFEWLKQC_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.4818931380998	1	1068.48189	1067.47462	0.89979	0.00096141	0.090083	9.6252E-05	0.98987	0.0010577	1068.4824528516	29.159	0.2172	29.151	29.103	29.32	-0.0077209	213	73	1.4926696	0.042578936	1.4911501	302.7986	0	8.637451						174	10	2	NaN	NaN	NaN	0.84455	1	11163	11163		2.7852	0	1	20015			2105	524	1212	1233	1623	1623					-0.056421652168864966
DFGGGAAA	8	Unmodified	_DFGGGAAA_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.2889306353	1	665.288931	664.281654	0.97937	0.00065157	-9.7171	-0.0064647	-8.7377	-0.0058131	665.2838189879899	33.407	0.096523	33.407	33.359	33.456	0	1140	52	0.93509084	0.031192243	0.93509084	191.15271	0	6.3763733						72	5	2	NaN	NaN	NaN	0.84876	1	2425	2425		0.39566	0	1	5233.6			2106	5301	1213	1234	1624	1624					-0.06391539221772291
DFGMAEEF	8	Unmodified	_DFGMAEEF_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000470074.1_1_2:160076105-160087520:+|nuORF;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	nc|ENSG00000170921|Q9HCD6|TANC2;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.3658603273	1	945.36586	944.358584	1.7856	0.001688	-0.9303	-0.00087948	0.85526	0.00080853	945.3650225514639	26.553	0.26598	26.553	26.529	26.795	0	360	64	1.405474	0.037464976	1.405474	285.58426	0	7.612671						366	12	4	NaN	NaN	NaN	0.54545	1	6920	6920		28.667	0	1	58173			2107	4755;1995	1214	1235	1625	1625					-0.11582108787592915
DFKKIKLLN	9	Unmodified	_DFKKIKLLN_					0	0	0			REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.6932065426001	1	1118.69321	1117.68593	1.9592	0.0021918	-3.3845	-0.0037862	-1.4253	-0.0015944	1118.689353818106	45.838	0.19184	45.838	45.766	45.958	0	183	52	1.510409	0.030139327	1.510409	306.22147	0	6.1104736						288	9	3	NaN	NaN	NaN	0.66529	1	13594	13594		2.1763	0.2517	1	30169	+		2108	13612	1215	1236	1626	1626					0.13179454816531688
DFKKIKLLN	9	Unmodified						0	0	0			REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1118.69321	1117.68593	1.9592	0.0021918	-3.3845	-0.0037862	-1.4253	-0.0015944	1118.689353818106	45.838	0.19184	45.838	45.766	45.958	0	183	52	1.510409	0.030139327	1.510409	306.22147		6.1104736	0.0077147	-4.2189E-05	-0.00012673	NaN	2.1763	288	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30169	+		2109	13612	1215	1236							0.13179454816531688
DFKKIKLLN	9	Unmodified						0	0	0			REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1118.69321	1117.68593	0.064297	7.1929E-05	-3.287	-0.0036771	-3.2227	-0.0036052	1118.689686245206	45.812	0.21584	45.823	45.751	45.967	0.010719	180	49	1.5121819	0.028365016	1.5106624	306.5809		5.7507324	-0.0077147	6.6886E-05	0.00012673	NaN	2.1763	232	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20534	+		2110	13612	1215	1236							0.13179454816531688
DFKTRNTFFP	10	Unmodified	_DFKTRNTFFP_					0	0	0		ENST00000409528.5_2_2:103431452-103431533:+|nuORF	ENST00000409528.5_2_2:103431452-103431533:+|nuORF	ENST00000409528.5_2_2:103431452-103431533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.8839003866333	3	424.8839	1271.62987	1.1728	0.0004983	6.9163	0.0029386	8.0891	0.0034369	424.88687796847586	15.268	0.2883	15.256	15.016	15.304	-0.012202	1443	64	0.7487872	0.038963377	0.7472678	454.74783	0	23.662964						505	13	4	NaN	NaN	NaN	0.68699	1	17453	17453		8.9416	0.48533	1	82834			2111	6860	1216	1237	1627	1627					0.004922019090145113
DFLAKEEKNFA	11	Unmodified	_DFLAKEEKNFA_					0	0	0		nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.8908320605	3	437.890832	1310.65067	1.4173	0.00062062	7.3798	0.0032316	8.7971	0.0038522	438.22833103796165	17.261	0.1918	17.261	17.213	17.405	0	1425	37	0.7599118	0.02224183	0.7599118	461.3565	0	13.5034485						194	9	4	NaN	NaN	NaN	0.67738	1	18961	18961		6.5671	3.7781	1	24261			2112	4873	1217	1238	1628	1628					0.0077674749804828025
DFLFCVTLPF	10	Unmodified	_DFLFCVTLPF_					0	0	0		nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3017355405	2	601.301736	1200.58892	0.57516	0.00034585	2.9854	0.0017951	3.5605	0.0021409	601.3031494440672	33.165	0.33784	33.162	33.138	33.476	-0.0024796	1161	67	0.9222442	0.040399075	0.92072475	373.6341	0	16.367126						377	15	2	NaN	NaN	NaN	0.53991	1	15850	15850		17.799	0	1	84803			2113	4308	1218	1239	1629	1629					-0.0033527545481319976
DFLFCVTLPF	10	Unmodified						0	0	0		nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.301736	1200.58892	0.80487	0.00048397	2.366	0.0014227	3.1709	0.0019066	601.3034968636006	33.166	0.19306	33.166	33.142	33.335	0	1167	73	0.91857195	0.044076502	0.91857195	372.14633		17.856964	0.0019046	-0.00037178	-0.0010764	NaN	17.799	386	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76579			2114	4308	1218	1239							-0.0033527545481319976
DFLSPSSSSLS	11	Unmodified	_DFLSPSSSSLS_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.76676841995	2	563.766768	1125.51898	1.3047	0.00073552	-3.1057	-0.0017509	-1.801	-0.0010154	563.7656757721476	34.927	0.072289	34.927	34.903	34.975	0	1197	70	0.9001988	0.042310774	0.9001988	364.979	0	17.154602						81	4	3	NaN	NaN	NaN	0.69801	1	13893	13893		7.5876	0	1	5159.2	+		2115	10138	1219	1240	1630	1630					-0.038754825897058254
DFLVYDVLD	9	Unmodified	_DFLVYDVLD_					0	0	0		ENSG00000134184|ENST00000309851|GSTM1	ENSG00000134184|ENST00000309851|GSTM1	ENSG00000134184|ENST00000309851|GSTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7713224816	2	549.771322	1097.52809	1.251	0.00068775	-0.49851	-0.00027407	0.75246	0.00041368	549.7713678964882	20.959	0.19244	20.959	20.911	21.103	0	1509	79	0.70793515	0.048311174	0.70793515	287.11566	0	19.593445						411	9	3	NaN	NaN	NaN	0.67989	1	12739	12739		0.92586	0	1	65823			2116	2853	1220	1241	1631	1631					-0.016770892333852316
DFPKDSFFNFF	11	Unmodified	_DFPKDSFFNFF_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.82187799565	2	705.821878	1409.6292	0.78511	0.00055415	-0.79417	-0.00056054	-0.0090577	-6.3931E-06	706.3237822615505	35.892	0.096485	35.892	35.82	35.916	0	1056	61	0.9863805	0.036592066	0.9863805	398.9439	0	14.799744						123	5	2	NaN	NaN	NaN	0.12578	1	20143	20143		37.231	20.373	1	9765.5			2117	5472	1221	1242	1632	1632					-0.05922637530693464
DFPKDSFFNFF	11	Unmodified	_DFPKDSFFNFF_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.82187799565	2	705.821878	1409.6292	0.75586	0.0005335	-1.1291	-0.00079697	-0.37328	-0.00026347	705.8213072237538	35.914	0.19284	35.916	35.819	36.012	0.0011024	1053	61	0.9882094	0.036588073	0.98669	399.68362	0	14.798157						299	9	3	NaN	NaN	NaN	0.17797	1	19191	19191		32.377	18.914	1	20877			2118	5472	1221	1242	1633	1633					-0.05922637530693464
DFPTISLEF	9	Unmodified	_DFPTISLEF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5248038103	1	1068.5248	1067.51753	1.0754	0.0011491	0.076023	8.1232E-05	1.1514	0.0012303	1068.5248984102209	35.842	0.096394	35.843	35.794	35.891	0.00053024	153	49	1.5281296	0.028340816	1.5266101	309.99173	0	5.7491455						86	5	2	NaN	NaN	NaN	0.032764	1	11170	11170		55.494	25.895	1	5719.8			2119	894	1222	1243	1634	1634					-0.013530718877973413
DFQIRLEPR	9	Unmodified	_DFQIRLEPR_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.3223795221501	2	587.32238	1172.63021	1.9511	0.0011459	-1.4882	-0.00087405	0.46286	0.00027185	587.3229387839714	28.219	0.096525	28.219	28.17	28.267	0	1155	106	0.92591566	0.06429565	0.92591566	375.22318	0	26.055542						280	5	4	NaN	NaN	NaN	0.62619	1	15579	15579		4.4131	0	1	37715	+		2120	8888	1223	1244	1635	1635					0.05079621628897257
DFRCDTIQP	9	Unmodified	_DFRCDTIQP_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.4935204569	1	1094.49352	1093.48624	1.8815	0.0020593	-4.4862	-0.0049101	-2.6047	-0.0028508	1094.4890191948368	28.918	0.19311	28.918	28.822	29.015	0	111	94	1.5529068	0.054837823	1.5529068	314.92252	0	11.12085						237	9	2	NaN	NaN	NaN	0.41766	1	12524	12524		13.003	2.3979	1	25378			2121	6155	1224	1245	1636	1636					-0.056759681935545814
DFRRGEQDYA	10	Unmodified	_DFRRGEQDYA_					0	0	0			REV__ENST00000479519.5_1_3:13393312-13395748:-|nuORF	REV__ENST00000479519.5_1_3:13393312-13395748:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.5266642599334	3	419.526664	1255.55816	1.5237	0.00063923	-0.12753	-5.3504E-05	1.3962	0.00058572	419.52624019114455	33.961	0.048256	33.96	33.96	34.008	-0.0012474	1425	25	0.7599118	0.014829516	0.75839233	461.56732	0	9.007385						42	3	2	NaN	NaN	NaN	0.69717	1	17136	17136		4.2489	1.5447	1	2766.7	+		2122	9528	1225	1246	1637	1637					-0.059393375154513706
DFSADFTI	8	Unmodified	_DFSADFTI_					0	0	0		ENSG00000118292|ENST00000369099|C1orf54	ENSG00000118292|ENST00000369099|C1orf54	ENSG00000118292|ENST00000369099|C1orf54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	915.4094397015	1	915.40944	914.402163	1.1999	0.0010984	2.0084	0.0018385	3.2083	0.0029369	915.4108562068604	31.863	0.12068	31.863	31.815	31.935	0	342	43	1.4161754	0.024959445	1.4161754	287.8942	0	5.074005						88	6	2	NaN	NaN	NaN	0.54545	1	6307	6307		28.667	6.5402	1	6405.2			2123	2172	1226	1247	1638	1638					-0.05846176018803817
DFSAPTLEDHF	11	Unmodified	_DFSAPTLEDHF_					0	0	0		ENST00000484386.1_1_15:44097294-44102132:-|nuORF;ENSG00000140259|ENST00000267812|MFAP1	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.7854924893501	2	639.785492	1277.55643	2.3694	0.0015159	5.5807	0.0035705	7.9501	0.0050864	639.7887257723723	18.652	0.14386	18.652	18.628	18.772	0	1155	46	0.92591566	0.027531445	0.92591566	374.86462	0	11.146362						188	7	3	NaN	NaN	NaN	0.32978	1	18366	18366		24.562	1.4444	1	22892			2124	3254	1227	1248	1639	1639					-0.07124391324077806
DFSGFNSER	9	Unmodified	_DFSGFNSER_					0	0	0			REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2	REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7305202994	2	529.73052	1057.44649	2.0915	0.0011079	-4.8266	-0.0025568	-2.7352	-0.0014489	529.7284897206919	25.998	0.19308	25.998	25.926	26.119	0	1299	58	0.8375814	0.03506595	0.8375814	339.85562	0	14.228302						210	9	4	NaN	NaN	NaN	0.35794	1	10962	10962		15.463	1.4211	1	18533	+		2125	11067	1228	1249	1640	1640					-0.07993771872611433
DFSLSSHT	8	Unmodified	_DFSLSSHT_					0	0	0			REV__nc|ENSG00000048991|Q15032-4|R3HDM1	REV__nc|ENSG00000048991|Q15032-4|R3HDM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.3999376477001	1	893.399938	892.392661	1.5118	0.0013507	-10.753	-0.0096067	-9.2411	-0.008256	893.3899562351766	32.611	0.14481	32.611	32.563	32.707	0	453	43	1.3500742	0.025057912	1.3500742	274.55692	0	5.095886						88	7	2	NaN	NaN	NaN	0.54545	1	5953	5953		28.667	6.5402	1	6227.7	+		2126	8485	1229	1250	1641	1641					-0.057839443043235406
DFTYKRTVHEW	11	Unmodified	_DFTYKRTVHEW_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3622329641499	2	741.362233	1480.70991	1.4763	0.0010945	-5.7919	-0.0042939	-4.3155	-0.0031994	741.3572995386638	26.504	0.12064	26.494	26.47	26.59	-0.010645	987	61	1.0283957	0.036497593	1.0268762	415.74304	0	14.754669						238	6	4	NaN	NaN	NaN	0.6085	1	19513	19513		13.463	3.8514	1	24848			2127	2094	1230	1251	1642	1642					-0.01121356487783487
DFTYKRTVHEW	11	Unmodified						0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	741.362233	1480.70991	1.6669	0.0012358	-6.7492	-0.0050036	-5.0823	-0.0037678	741.3560923173465	26.505	0.1448	26.505	26.456	26.601	0	990	67	1.0265712	0.040151715	1.0265712	415.00543		16.231873	0.0054718	-0.00060863	-0.00015257	NaN	13.463	288	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24615			2128	2094	1230	1251							-0.01121356487783487
DFVEFLWD	8	Unmodified	_DFVEFLWD_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7451077311	2	535.745108	1069.47566	1.8455	0.00098872	4.891	0.0026203	6.7365	0.003609	535.7479564596118	21.513	0.16869	21.513	21.44	21.609	0	1242	70	0.87260187	0.04234737	0.87260187	354.01422	0	17.180328						311	8	3	NaN	NaN	NaN	0.80071	1	11528	11528		9.1232	0.83292	1	27753			2129	325	1231	1252	1643	1643					-0.05629627576331586
DFVEFLWD	8	Unmodified						0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.745108	1069.47566	1.1839	0.00063428	6.0475	0.0032399	7.2314	0.0038742	535.7479339268452	21.513	0.12055	21.499	21.45	21.571	-0.014006	1248	73	0.8689189	0.044186175	0.86739945	352.52002		17.92633	-0.0069841	0.00074972	-0.0026012	NaN	9.1232	208	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24053			2130	325	1231	1252							-0.05629627576331586
DFVLVASG	8	Unmodified	_DFVLVASG_					0	0	0			REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4246958352	1	807.424696	806.417419	0.2339	0.00018886	5.8299	0.0047072	6.0638	0.0048961	807.4324465197362	53.713	0.27411	53.712	53.623	53.897	-0.00059128	405	190	1.3786905	0.1128391	1.377171	280.82983	0	22.984528						1029	11	6	NaN	NaN	NaN	0.84727	1	4750	4750		1.2418	0	1	274850	+		2131	9347	1232	1253	1644	1644					0.006467355690460863
DFVLVASG	8	Unmodified						0	0	0			REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.424696	806.417419	2.2952	0.0018532	5.5778	0.0045036	7.873	0.0063568	807.4310708354781	53.731	0.10546	53.731	53.626	53.731	0	408	163	1.3769034	0.096683145	1.3769034	280.46582		19.693695	0.0094795	-0.00011769	-0.00013383	NaN	1.2418	347	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135560	+		2132	9347	1232	1253							0.006467355690460863
DFVLVASG	8	Unmodified						0	0	0			REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	REV__nc|ENSG00000291029|Q75LS8|FKBP9P1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.424696	806.417419	0.2339	0.00018886	5.8299	0.0047072	6.0638	0.0048961	807.4324465197362	53.713	0.27411	53.712	53.623	53.897	-0.00059128	405	190	1.3786905	0.1128391	1.377171	280.82983		22.984528	-0.0094795	8.5894E-05	0.00013383	NaN	1.2418	1029	11	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274850	+		2133	9347	1232	1253							0.006467355690460863
DFYGYIHL	8	Unmodified	_DFYGYIHL_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.4883587245	1	1027.48836	1026.48108	1.5876	0.0016312	-7.5648	-0.0077727	-5.9772	-0.0061415	1027.4789137082848	22.645	0.096478	22.631	22.583	22.68	-0.01354	258	40	1.4660252	0.023111463	1.4645058	297.54517	0	4.690674						93	5	2	NaN	NaN	NaN	0.84207	1	9429	9429		3.5732	0.36161	1	7467.5	+		2134	9315	1233	1254	1645	1645					-0.031099039938681017
DFYTKVLK	8	Unmodified	_DFYTKVLK_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.28694275605005	2	507.286943	1012.55933	1.0326	0.00052384	-6.2993	-0.0031956	-5.2667	-0.0026717	507.28355854789265	13.206	0.26367	13.196	13.124	13.387	-0.010098	1317	46	0.8265074	0.027692616	0.82498795	335.55328	0	11.24292						304	12	3	NaN	NaN	NaN	0.3042	1	8915	8915		41.785	12.889	1	48529			2135	4973	1234	1255	1646	1646					0.05355528591383063
DGGDWSFC	8	Unmodified	_DGGDWSFC_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.3035944215001	1	886.303594	885.296318	1.0308	0.00091364	-2.6697	-0.0023661	-1.6388	-0.0014525	886.301549095353	33.237	0.19305	33.235	33.21	33.403	-0.0024757	468	64	1.3411216	0.037608862	1.3396021	272.76944	0	7.6492615						143	9	2	NaN	NaN	NaN	0.84887	1	5751	5751		0.32989	0	1	11783			2136	140	1235	1256	1647	1647					-0.15091835135922338
DGGGGARG	8	Unmodified	_DGGGGARG_					0	0	0		ENST00000284000.8_1_19:33864530-33864704:+|nuORF	ENST00000284000.8_1_19:33864530-33864704:+|nuORF	ENST00000284000.8_1_19:33864530-33864704:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.2903276188001	1	646.290328	645.283051	1.8579	0.0012007	4.4016	0.0028447	6.2594	0.0040454	646.2930748758041	36.372	0.14445	36.374	36.254	36.398	0.0016747	1125	49	0.9442611	0.029333651	0.94274163	193.14185	0	5.9999847						130	7	2	NaN	NaN	NaN	0.84727	1	1836	1836		1.2418	0	1	22207			2137	6372	1236	1257	1648	1648					-0.053779051329911454
DGGGGARG	8	Unmodified						0	0	0		ENST00000284000.8_1_19:33864530-33864704:+|nuORF	ENST00000284000.8_1_19:33864530-33864704:+|nuORF	ENST00000284000.8_1_19:33864530-33864704:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	646.290328	645.283051	1.6533	0.0010685	4.4183	0.0028555	6.0716	0.003924	646.293220248857	36.205	0.048264	36.205	36.157	36.205	0	1125	43	0.9442611	0.025672436	0.9442611	193.14185		5.251129	-0.084289	7.8815E-06	0.00075972	NaN	1.2418	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4348.7			2138	6372	1236	1257							-0.053779051329911454
DGGGGPPC	8	Unmodified	_DGGGGPPC_					0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.2453512611	1	659.245351	658.238075	1.8436	0.0012154	-1.3723	-0.00090468	0.47129	0.0003107	659.2436431996709	26.143	0.14477	26.143	26.119	26.263	0	777	64	1.1556307	0.038021207	1.1556307	236.27951	0	7.7737885						134	7	2	NaN	NaN	NaN	0.84887	1	2235	2235		0.32989	0.32989	1	11027			2139	342	1237	1258	1649	1649					-0.10471471990547343
DGGGGPPC	8	Unmodified						0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.245351	658.238075	1.9984	0.0013174	-0.26728	-0.0001762	1.7311	0.0011412	659.2453722570556	26.094	0.096533	26.083	26.083	26.18	-0.011137	777	94	1.1556307	0.056120634	1.1541113	236.27951		11.474365	-0.029809	0.0003708	-0.00075972	NaN	0.32989	148	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12692			2140	342	1237	1258							-0.10471471990547343
DGGGHQAL	8	Unmodified	_DGGGHQAL_					0	0	0			REV__ENSG00000180447|ENST00000298743|GAS1	REV__ENSG00000180447|ENST00000298743|GAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3478424977001	1	754.347842	753.340566	1.4899	0.0011239	8.1456	0.0061446	9.6355	0.0072685	754.3564106229292	44.592	0.096165	44.592	44.52	44.616	0	675	34	1.2170867	0.019845605	1.2170867	248.20451	0	4.04718						52	5	2	NaN	NaN	NaN	0.84756	1	4117	4117		1.072	0.74213	1	3359.3	+		2141	10830	1238	1259	1650	1650					-0.04597062927427942
DGGHGAGVG	9	Unmodified	_DGGHGAGVG_					0	0	0			REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3165423693001	1	726.316542	725.309266	1.534	0.0011141	-8.603	-0.0062485	-7.069	-0.0051343	726.3103601731935	19.876	0.19252	19.861	19.813	20.006	-0.014141	633	58	1.2423272	0.03423488	1.2408078	253.52696	0	6.986435						138	9	2	NaN	NaN	NaN	0.55027	1	3603	3603		7.5404	1.2902	1	10338	+		2142	10469	1239	1260	1651	1651					-0.06437635961515298
DGGPGPAGAP	10	Unmodified	_DGGPGPAGAP_					0	0	0		ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.18521733874996	2	398.185217	794.355882	0.77308	0.00030783	8.7098	0.0034681	9.4828	0.0037759	398.18837088394713	31.911	0.096558	31.911	31.911	32.008	0	1437	43	0.7524962	0.025962949	0.7524962	306.628	0	10.579376						87	5	2	NaN	NaN	NaN	0.77421	1	4679	4679		1.9246	0.25428	1	6870.5			2143	7256	1240	1261	1652	1652					-0.04952196130238917
DGHKDWIF	8	Unmodified	_DGHKDWIF_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.24306656864997	2	509.243067	1016.47158	2.0053	0.0010212	-0.41556	-0.00021162	1.5898	0.00080957	509.24238812011174	22.79	0.14473	22.79	22.742	22.887	0	1281	37	0.84864825	0.022126555	0.84864825	344.52448	0	8.982666						120	7	2	NaN	NaN	NaN	0.77891	1	9228	9228		12.049	3.7584	1	13496			2144	5829	1241	1262	1653	1653					-0.03599672279392507
DGHKDWIF	8	Unmodified	_DGHKDWIF_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.24306656864997	2	509.243067	1016.47158	1.2749	0.00064921	-1.1016	-0.00056098	0.17326	8.8231E-05	509.2420372553413	22.814	0.09634	22.8	22.776	22.872	-0.01354	1281	37	0.84864825	0.022126555	0.8471288	344.52448	0	8.982666						105	5	3	NaN	NaN	NaN	0.82212	1	9051	9051		6.2502	1.3405	1	11275			2145	5829	1241	1262	1654	1654					-0.03599672279392507
DGIDNTAKL	9	Unmodified	_DGIDNTAKL_					0	0	0			REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4840016281001	1	946.484002	945.476725	2.0234	0.0019151	-6.9791	-0.0066056	-4.9557	-0.0046905	946.4774070495534	23.103	0.096409	23.103	23.055	23.152	0	333	76	1.4215236	0.044553757	1.4215236	288.84058	0	9.0529175						142	5	2	NaN	NaN	NaN	0.33629	1	6956	6956		16.584	1.4088	1	14860	+		2146	9948	1242	1263	1655	1655					0.0018058679257819676
DGKEMQILVG	10	Unmodified	_DGKEMQILVG_					0	0	0			REV__ENSG00000102924|ENST00000219197|CBLN1	REV__ENSG00000102924|ENST00000219197|CBLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5608717405999	1	1089.56087	1088.5536	0.43703	0.00047617	2.5637	0.0027933	3.0007	0.0032695	1089.565150065894	31.645	0.096525	31.64	31.616	31.712	-0.0044174	147	49	1.5316714	0.028334856	1.530152	310.63358	0	5.7464905						132	5	3	NaN	NaN	NaN	0.62092	1	12022	12022		13.463	2.2927	1	10357	+		2147	8900	1243	1264	1656	1656					0.012860620173796633
DGKEMQILVG	10	Unmodified						0	0	0			REV__ENSG00000102924|ENST00000219197|CBLN1	REV__ENSG00000102924|ENST00000219197|CBLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1089.56087	1088.5536	1.3375	0.0014573	3.2285	0.0035176	4.566	0.0049749	1089.5649996390177	31.646	0.096548	31.646	31.621	31.718	0	147	49	1.5316714	0.028337836	1.5316714	310.63358		5.747101	0.0027299	0.00040951	0.00075972	NaN	13.463	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8616.9	+		2148	8900	1243	1264							0.012860620173796633
DGKEMQILVG	10	Unmodified						0	0	0			REV__ENSG00000102924|ENST00000219197|CBLN1	REV__ENSG00000102924|ENST00000219197|CBLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1089.56087	1088.5536	0.43703	0.00047617	2.5637	0.0027933	3.0007	0.0032695	1089.565150065894	31.645	0.096525	31.64	31.616	31.712	-0.0044174	147	49	1.5316714	0.028334856	1.530152	310.63358		5.7464905	-0.0027299	-0.00031482	-0.00075972	NaN	13.463	132	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10357	+		2149	8900	1243	1264							0.012860620173796633
DGLAALLAL	9	Unmodified	_DGLAALLAL_					0	0	0			REV__ENST00000529593.1_1_8:146277868-146278266:+|nuORF	REV__ENST00000529593.1_1_8:146277868-146278266:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.5138451935001	1	856.513845	855.506569	1.3426	0.0011499	-0.33798	-0.00028948	1.0046	0.00086046	856.5139173375802	30.946	0.048252	30.946	30.922	30.97	0	381	34	1.3929803	0.019639134	1.3929803	283.46783	0	3.996521						51	3	2	NaN	NaN	NaN	0.23112	1	5477	5477		23.334	4.2161	1	3430.1	+		2150	12612	1244	1265	1657	1657					0.07303570528563341
DGLPFEGN	8	Unmodified	_DGLPFEGN_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|282|2|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|341|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|350|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|52;chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|90;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|74;chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|78;chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|65;chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|91;chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|282|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|282|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.3784739241	1	848.378474	847.371197	1.8656	0.0015827	2.2369	0.0018978	4.1025	0.0034805	848.380694528297	28.074	0.096529	28.074	28.05	28.146	0	438	46	1.359022	0.026837707	1.359022	276.59937	0	5.4622498						107	5	2	NaN	NaN	NaN	0.76633	1	5353	5353		13.737	1.1492	1	7670.7			2151	113	1245	1266	1658	1658					-0.05859329333043206
DGLQTGKVEAV	11	Unmodified	_DGLQTGKVEAV_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7984028993501	2	558.798403	1115.58225	1.7386	0.00097154	7.958	0.0044469	9.6966	0.0054184	558.8036906946538	19.635	0.072256	19.621	19.597	19.669	-0.014141	1257	37	0.86339295	0.022107422	0.8618735	350.094	0	8.964264						69	4	2	NaN	NaN	NaN	0.73057	1	13119	13119		5.4499	0.26105	1	6157	+		2152	10344	1246	1267	1659	1659					0.029085029181942446
DGNLELEMN	9	Unmodified	_DGNLELEMN_					0	0	0		nc|ENSG00000232872|Q8IX95|CTAGE3P	nc|ENSG00000232872|Q8IX95|CTAGE3P	nc|ENSG00000232872|Q8IX95|CTAGE3P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.4459015623002	1	1034.4459	1033.43863	1.8141	0.0018766	-0.82067	-0.00084894	0.99348	0.0010277	1034.4455076675845	27.833	0.1689	27.833	27.784	27.953	0	216	67	1.4908947	0.039055586	1.4908947	302.56564	0	7.9260254						337	8	4	NaN	NaN	NaN	0.27507	1	9906	9906		20.513	0.064659	1	66374			2153	8044	1247	1268	1660	1660					-0.07675667184389567
DGNSPAQM	8	Unmodified	_DGNSPAQM_					0	0	0		ENST00000493306.1_1_9:110248141-110248189:-|nuORF;nc|ENSG00000136826|O43474-6|KLF4;nc|ENSG00000136826|O43474-5|KLF4	ENST00000493306.1_1_9:110248141-110248189:-|nuORF	ENST00000493306.1_1_9:110248141-110248189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.3301435230001	1	819.330144	818.322867	2.5382	0.0020796	-1.0845	-0.00088856	1.4537	0.0011911	819.3300486660852	26.167	0.072405	26.167	26.143	26.215	0	498	55	1.3232021	0.03228271	1.3232021	269.46158	0	6.574127						63	4	2	NaN	NaN	NaN	0.82332	1	4996	4996		6.0903	0.62448	1	3968.3			2154	7274	1248	1269	1661	1661					-0.09356146244590491
DGNSPAQM	8	Unmodified						0	0	0		ENST00000493306.1_1_9:110248141-110248189:-|nuORF;nc|ENSG00000136826|O43474-6|KLF4;nc|ENSG00000136826|O43474-5|KLF4	ENST00000493306.1_1_9:110248141-110248189:-|nuORF	ENST00000493306.1_1_9:110248141-110248189:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.330144	818.322867	2.4286	0.0019899	0.0058857	4.8223E-06	2.4345	0.0019947	819.3294019765037	26.191	0.09656	26.18	26.131	26.228	-0.011137	495	43	1.3249949	0.025097966	1.3234755	269.82666		5.1110535	0.0063907	0.00033716	0.00013669	NaN	6.0903	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4745.7			2155	7274	1248	1269							-0.09356146244590491
DGPGALVF	8	Unmodified	_DGPGALVF_					0	0	0			REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENSG00000092051|ENST00000356300|JPH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.3984810847002	1	775.398481	774.391205	1.1872	0.00092054	4.9952	0.0038732	6.1824	0.0047938	775.4023775488489	32.61	0.21721	32.607	32.558	32.776	-0.0031052	546	61	1.294491	0.035919428	1.2929716	263.8615	0	7.321594						294	10	3	NaN	NaN	NaN	0.76633	1	4344	4344		13.737	4.6139	1	41148	+		2156	8741	1249	1270	1662	1662					-0.005015336024143835
DGSTPAHLAL	10	Unmodified	_DGSTPAHLAL_					0	0	0			REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4999860433	1	981.499986	980.49271	1.4101	0.001384	-11.223	-0.011016	-9.8133	-0.0096317	981.4882003885368	32.056	0.096539	32.056	32.008	32.104	0	282	70	1.4517976	0.040911198	1.4517976	294.84067	0	8.308502						136	5	2	NaN	NaN	NaN	0.53991	1	7896	7896		17.799	2.6236	1	15338	+		2157	13295	1250	1271	1663	1663					0.0016829302946916869
DGSTPAHLAL	10	Unmodified						0	0	0			REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	981.499986	980.49271	1.4101	0.001384	-11.223	-0.011016	-9.8133	-0.0096317	981.4882003885368	32.056	0.096539	32.056	32.008	32.104	0	282	70	1.4517976	0.040911198	1.4517976	294.84067		8.308502	0.0024367	3.4265E-05	0.0016494	NaN	17.799	136	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15338	+		2158	13295	1250	1271							0.0016829302946916869
DGSTPAHLAL	10	Unmodified						0	0	0			REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	REV__PLAG1|p.A145P|1|0.08|ENSG00000181690|chr8:56167313-56167313|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	981.499986	980.49271	1.0928	0.0010726	-11.306	-0.011097	-10.213	-0.010024	981.4894427146812	32.055	0.12068	32.051	32.027	32.148	-0.0037613	285	73	1.4500183	0.042683005	1.4484988	294.47934		8.6683655	-0.0024367	-4.7016E-05	-0.0016494	NaN	17.799	137	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14370	+		2159	13295	1250	1271							0.0016829302946916869
DGVNDAPAL	9	Unmodified	_DGVNDAPAL_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000074370|Q93084-5|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1;tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1;PDXDC1-ATP2A1|2|fusion;PDXDC1-ATP2A1|1|fusion	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.4155877119	1	871.415588	870.408311	1.5807	0.0013775	0.3295	0.00028713	1.9102	0.0016646	871.4159601388926	19.803	0.14434	19.789	19.741	19.885	-0.014141	432	37	1.3625998	0.021464467	1.3610804	277.21036	0	4.366791						81	7	2	NaN	NaN	NaN	0.070055	1	5525	5525		40.154	11.258	1	5496			2160	4945	1251	1272	1664	1664					-0.03207657787288554
DGVNDAPAL	9	Unmodified						0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000074370|Q93084-5|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;tr|U7STP1|U7STP1_FUSNUP-typeCa(2+)transporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01417PE=4SV=1;tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1;PDXDC1-ATP2A1|2|fusion;PDXDC1-ATP2A1|1|fusion	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	871.415588	870.408311	1.8731	0.0016323	2.0788	0.0018115	3.9519	0.0034438	871.4187576229108	19.804	0.12013	19.804	19.78	19.9	0	435	37	1.360811	0.021466732	1.360811	276.84644		4.3672485	0.0075111	0.00091863	-0.00013468	NaN	40.154	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5159			2161	4945	1251	1272							-0.03207657787288554
DHCSPCGC	8	Unmodified	_DHCSPCGC_					0	0	0			REV__ENST00000467329.5_1_1:150316853-150325452:+|nuORF	REV__ENST00000467329.5_1_1:150316853-150325452:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.2375054662	1	821.237505	820.230229	0.1477	0.0001213	1.602	0.0013156	1.7497	0.0014369	821.238241673883	56.155	0.047989	56.154	56.13	56.178	-0.00056458	312	49	1.433996	0.028497696	1.4324765	292.01282	0	5.8031616						60	3	2	NaN	NaN	NaN	0.84887	1	4906	4906		0.32989	0	1	4621.7	+		2162	12309	1252	1273	1665	1665					-0.1870769057399002
DHDCLHNA	8	Unmodified	_DHDCLHNA_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.68505855074994	2	462.685059	923.355564	1.0734	0.00049667	-1.523	-0.00070468	-0.44957	-0.00020801	462.6842397870481	29.136	0.048267	29.136	29.136	29.184	0	1338	31	0.81357855	0.018478692	0.81357855	330.7318	0	7.5118713						41	3	2	NaN	NaN	NaN	0.84727	1	6464	6464		1.2418	0.31598	1	2476.3	+		2163	12241	1253	1274	1666	1666					-0.10917939121748077
DHETFWLF	8	Unmodified	_DHETFWLF_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.75072442525	2	547.750724	1093.4869	0.58548	0.0003207	7.6173	0.0041724	8.2028	0.0044931	548.2558106599998	35.072	0.072392	35.072	35.072	35.144	0	1248	82	0.8689189	0.049776614	0.8689189	352.42157	0	20.18872						79	4	2	NaN	NaN	NaN	0.8439	1	12527	12527		3.1533	0.26387	1	5839.5			2164	4530	1254	1275	1667	1667					-0.056108054822061604
DHGASGQG	8	Unmodified	_DHGASGQG_					0	0	0		chr1:144208475-144245238|460|21.14|0.0|21.01|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4;chr1:143382868-144245238|213|21.6|0.0|21.04|-|2|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|4	chr1:144208475-144245238|460|21.14|0.0|21.01|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4	chr1:144208475-144245238|460|21.14|0.0|21.01|-|2|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.2958069272001	1	728.295807	727.28853	0.61861	0.00045053	7.2253	0.0052621	7.8439	0.0057127	728.3009265321773	33.697	0.16895	33.697	33.6	33.769	0	672	43	1.2188909	0.025254011	1.2188909	248.73158	0	5.153427						118	8	2	NaN	NaN	NaN	0.84727	1	3727	3727		1.2418	0.91196	1	9211			2165	109	1255	1276	1668	1668					-0.08602226341179176
DHILIAFS	8	Unmodified	_DHILIAFS_					0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.2503602845	2	458.25036	914.486168	1.6765	0.00076827	-2.9741	-0.0013629	-1.2975	-0.0005946	458.2490621532718	25.636	0.096466	25.624	25.6	25.696	-0.0116	1335	40	0.8154261	0.02402109	0.81390667	331.53	0	9.766296						86	5	2	NaN	NaN	NaN	0.62311	1	6193	6193		23.85	0	1	10666	+		2166	8612	1256	1277	1669	1669					0.025503998687554486
DHILIAFS	8	Unmodified						0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	458.25036	914.486168	1.6765	0.00076827	-2.9741	-0.0013629	-1.2975	-0.0005946	458.2490621532718	25.636	0.096466	25.624	25.6	25.696	-0.0116	1335	40	0.8154261	0.02402109	0.81390667	331.53		9.766296	0.0061462	0.00050887	-0.0016834	NaN	23.85	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10666	+		2167	8612	1256	1277							0.025503998687554486
DHLTDHKS	8	Unmodified	_DHLTDHKS_					0	0	0		ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4482848238001	1	952.448285	951.441008	1.8275	0.0017406	-0.8976	-0.00085492	0.92986	0.00088564	952.4479474932177	54.572	0.096409	54.572	54.5	54.596	0	273	61	1.4571344	0.035565495	1.4571344	296.04968	0	7.2259216						78	5	2	NaN	NaN	NaN	0.82797	1	7118	7118		5.4659	0	1	4101.8			2168	2698	1257	1278	1670	1670					-0.03665450664425407
DHLTFFAL	8	Unmodified	_DHLTFFAL_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.2503602845	2	482.25036	962.486168	2.6386	0.0012725	-1.8365	-0.00088565	0.8021	0.00038681	482.2487594259551	25.563	0.096498	25.552	25.528	25.624	-0.011602	1290	34	0.84311575	0.02028817	0.8415963	342.53476	0	8.242493						72	5	2	NaN	NaN	NaN	0.77489	1	7248	7248		12.588	1.4972	1	8009.4			2169	5285	1258	1279	1671	1671					0.003423998687594576
DHLTFFAL	8	Unmodified						0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	482.25036	962.486168	2.0595	0.00099319	-1.9577	-0.00094411	0.10177	4.908E-05	482.24943322361617	25.539	0.096445	25.539	25.515	25.612	0	1290	34	0.84311575	0.020290375	0.84311575	342.53476		8.243408	-0.0061218	-3.7303E-05	0.00075972	NaN	12.588	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9047.1			2170	5285	1258	1279							0.003423998687594576
DHMVFGFDF	9	Unmodified	_DHMVFGFDF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|36	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|36	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.4662430739	1	1114.46624	1113.45897	1.1476	0.001279	6.8561	0.0076409	8.0037	0.0089198	1114.4746425364558	28.869	0.14482	28.861	28.837	28.982	-0.0083504	78	49	1.5723488	0.028259993	1.5708294	318.7939	0	5.729706						146	7	2	NaN	NaN	NaN	0.20577	1	13025	13025		24.961	7.162	1	10311			2171	151	1259	1280	1672	1672					-0.09322451733942216
DHPNLIQR	8	Unmodified	_DHPNLIQR_					0	0	0		nc|ENSG00000188163|Q6J272-2|CIMIP2A;ENSG00000188163|ENST00000344774|FAM166A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.76724015670004	2	496.76724	991.519927	1.3341	0.00066273	-4.0625	-0.0020181	-2.7284	-0.0013554	496.7643530962275	14.404	0.095798	14.393	14.369	14.465	-0.011218	1320	31	0.824661	0.018464744	0.8231416	334.89893	0	7.4986267						50	5	2	NaN	NaN	NaN	0.69898	1	8107	8107		19.118	1.3193	1	4870.3			2172	5539	1260	1281	1673	1673					0.02382821360527032
DHQNDSFRAE	10	Unmodified	_DHQNDSFRAE_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.8426524031	3	406.842652	1217.50613	0.54141	0.00022027	0.16115	6.5563E-05	0.70256	0.00028583	406.84309780203404	32.031	0.12066	32.027	32.003	32.123	-0.0037613	1452	49	0.74322224	0.029684842	0.7417028	451.58334	0	18.03653						217	6	5	NaN	NaN	NaN	0.65442	1	16243	16243		6.1406	2.8362	1	26410			2173	691	1261	1282	1674	1674					-0.09392500929243397
DHRPSPVDCLK	11	Unmodified	_DHRPSPVDCLK_					0	0	0			REV__ENST00000579140.5_1_17:9846551-9939763:-|nuORF	REV__ENST00000579140.5_1_17:9846551-9939763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.81660404	2	633.816604	1265.61866	2.0461	0.0012969	1.5078	0.00095564	3.5539	0.0022525	633.8183781460274	28.243	0.096529	28.243	28.194	28.291	0	1173	31	0.91489893	0.018365204	0.91489893	370.44177	0	7.436035						39	5	2	NaN	NaN	NaN	0.6875	1	18123	18123		8.2775	1.8476	1	2635.1	+		2174	12857	1262	1283	1675	1675					-0.0035294345675538352
DHRPSPVDCLK	11	Unmodified						0	0	0			REV__ENST00000579140.5_1_17:9846551-9939763:-|nuORF	REV__ENST00000579140.5_1_17:9846551-9939763:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	633.816604	1265.61866	2.0461	0.0012969	1.5078	0.00095564	3.5539	0.0022525	633.8183781460274	28.243	0.096529	28.243	28.194	28.291	0	1173	31	0.91489893	0.018365204	0.91489893	370.44177		7.436035	0	0	0	NaN	8.2775	39	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2635.1	+		2175	12857	1262	1283							-0.0035294345675538352
DHVLGDCFSV	10	Unmodified	_DHVLGDCFSV_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2449489431	2	546.244949	1090.47534	1.6825	0.00091905	6.9259	0.0037833	8.6084	0.0047023	546.2487757751832	19.06	0.21591	19.06	19.036	19.252	0	1245	85	0.87076044	0.051600754	0.87076044	353.18063	0	20.92926						440	10	3	NaN	NaN	NaN	0.44258	1	12411	12411		21.835	6.8221	1	60203	+		2176	8728	1263	1284	1676	1676					-0.06627370567844082
DIALVEATI	9	Unmodified	_DIALVEATI_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5298891882	1	944.529889	943.522613	1.2553	0.0011857	-1.5085	-0.0014248	-0.25314	-0.0002391	944.5297429387837	27.759	0.096521	27.75	27.702	27.798	-0.009552	288	73	1.4482387	0.042723894	1.4467193	294.2776	0	8.681366						238	5	4	NaN	NaN	NaN	0.14301	1	6776	6776		29.598	0	1	38960	+		2177	8332	1264	1285	1677	1677					0.04859231974796785
DIATLFKDW	9	Unmodified	_DIATLFKDW_					0	0	0		tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	tr|U7SSD2|U7SSD2_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01591PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7873068968	2	554.787307	1107.56006	1.5686	0.00087022	6.9786	0.0038716	8.5472	0.0047419	554.7912491142628	22.766	0.072342	22.766	22.742	22.814	0	1269	100	0.8560222	0.060759306	0.8560222	347.13596	0	24.639252						288	4	3	NaN	NaN	NaN	0.27608	1	13182	13182		20.449	2.6497	1	42442			2178	13827	1265	1286	1678	1678					0.010583232404314913
DIDEAVCAIL	10	Unmodified	_DIDEAVCAIL_					0	0	0		ENSG00000186453|ENST00000295150|FAM228A	ENSG00000186453|ENST00000295150|FAM228A	ENSG00000186453|ENST00000295150|FAM228A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.26280734525	2	531.262807	1060.51106	1.0121	0.00053767	8.2131	0.0043633	9.2251	0.004901	531.7668640770086	33.528	0.072266	33.528	33.528	33.6	0	1275	40	0.85233563	0.02396655	0.85233563	345.82938	0	9.724274						52	4	2	NaN	NaN	NaN	0.64158	1	11118	11118		12.049	1.9971	1	5666.3			2179	5471	1266	1287	1679	1679					-0.016773331108424827
DIDECENTD	9	Unmodified	_DIDECENTD_					0	0	0		nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	nc|ENSG00000143341|Q96RW7-2|HMCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.1874936437	2	527.187494	1052.36043	1.3251	0.00069856	-1.1377	-0.00059977	0.18739	9.8791E-05	527.1878570319678	29.111	0.04825	29.103	29.079	29.127	-0.0077209	1317	31	0.8265074	0.018462718	0.82498795	335.38306	0	7.4918823						74	3	3	NaN	NaN	NaN	0.60736	1	10491	10491		5.1889	0.27914	1	4651.9			2180	3414	1267	1288	1680	1680					-0.163651445602909
DIFIYQNDKFN	11	Unmodified	_DIFIYQNDKFN_					0	0	0			REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.8979866350333	3	472.897987	1415.67213	0.47948	0.00022675	-7.8265	-0.0037012	-7.3471	-0.0034744	472.89181713304765	28.725	0.048254	28.716	28.716	28.765	-0.0083504	1335	34	0.8154261	0.020318925	0.81390667	494.67764	0	12.326477						45	3	2	NaN	NaN	NaN	0.72342	1	19232	19232		2.5605	0	1	6096.4	+		2181	13618	1268	1289	1681	1681					-0.019078674732554646
DIFIYQNDKFN	11	Unmodified						0	0	0			REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	472.897987	1415.67213	1.2517	0.00059192	-11.564	-0.0054686	-10.312	-0.0048767	472.89269924222185	28.725	0.0483	28.725	28.701	28.75	0	1329	37	0.81912065	0.02216971	0.81912065	496.91895		13.449219	0.0045524	-0.0036546	0.002607	NaN	2.5605	63	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6469.3	+		2182	13618	1268	1289							-0.019078674732554646
DIFIYQNDKFN	11	Unmodified						0	0	0			REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	REV__tr|U7T5Q1|U7T5Q1_FUSNUGTPaseEraOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eraPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	472.897987	1415.67213	0.47948	0.00022675	-7.8265	-0.0037012	-7.3471	-0.0034744	472.89181713304765	28.725	0.048254	28.716	28.716	28.765	-0.0083504	1335	34	0.8154261	0.020318925	0.81390667	494.67764		12.326477	-0.0045524	0.0016478	-0.002607	NaN	2.5605	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6096.4	+		2183	13618	1268	1289							-0.019078674732554646
DIFYKAIQK	9	Unmodified	_DIFYKAIQK_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.3187742007	2	563.318774	1124.623	1.8047	0.0010166	0.4725	0.00026617	2.2772	0.0012828	563.8219992661002	18.746	0.28801	18.731	18.564	18.852	-0.014059	1209	67	0.892844	0.04046464	0.8913246	362.00052	0	16.40622						452	12	5	NaN	NaN	NaN	0.33629	1	13451	13451		16.584	4.0144	1	72849			2184	243	1269	1290	1682	1682					0.0656688902845417
DIFYKAIQK	9	Unmodified						0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000492267.1_1_3:82856210-82856543:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.318774	1124.623	2.3359	0.0013159	-2.0965	-0.001181	0.23946	0.00013489	563.3177037230707	18.7	0.1439	18.7	18.652	18.796	0	1200	40	0.89836043	0.02390188	0.89836043	364.23715		9.690918	-0.01561	-0.0012151	0.0035179	NaN	16.584	95	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19537			2185	243	1269	1290							0.0656688902845417
DIGSKGYS	8	Unmodified	_DIGSKGYS_					0	0	0		nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	826.3941239883001	1	826.394124	825.386848	1.4519	0.0011998	5.2694	0.0043546	6.7213	0.0055545	826.3984362591048	39.668	0.048199	39.673	39.673	39.722	0.0053368	474	46	1.3375392	0.0268749	1.3360198	272.34274	0	5.4721375						74	3	2	NaN	NaN	NaN	0.75561	1	4974	4974		15.175	2.5875	1	6475.1			2186	2811	1270	1291	1683	1683					-0.032830428159968505
DIGSKGYS	8	Unmodified						0	0	0		nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	826.394124	825.386848	1.0517	0.00086914	4.7153	0.0038967	5.767	0.0047658	826.3982231411757	39.694	0.048199	39.694	39.694	39.742	0	480	52	1.3339561	0.030458331	1.3339561	271.61316		6.201782	0.010428	-0.00017789	-0.0010318	NaN	15.175	79	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8409.1			2187	2811	1270	1291							-0.032830428159968505
DIGVALVLI	9	Unmodified	_DIGVALVLI_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5764454503	1	912.576445	911.569169	1.019	0.00092996	-0.41177	-0.00037577	0.60727	0.00055418	912.5763753340657	31.862	0.2896	31.857	31.761	32.05	-0.0044155	294	115	1.4446791	0.067682266	1.4431597	293.70227	0	13.759766						385	13	4	NaN	NaN	NaN	0.14301	1	6147	6147		29.598	4.6373	1	71601	+		2188	8250	1271	1292	1684	1684					0.10984716596738053
DIHGPDAKL	9	Unmodified	_DIHGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.2561739439	2	483.256174	964.497795	2.4031	0.0011613	-1.834	-0.00088631	0.56905	0.000275	483.2553196977417	15.796	0.09579	15.783	15.711	15.807	-0.012611	1323	52	0.8228144	0.031398535	0.82129496	334.27707	0	12.756012						105	5	2	NaN	NaN	NaN	0.10945	1	7317	7317		34.454	8.653	1	16899			2189	2444	1272	1293	1685	1685					0.01412596892100737
DIIEYITQ	8	Unmodified	_DIIEYITQ_					0	0	0			REV__nc|ENSG00000135069|Q9Y617-2|PSAT1	REV__nc|ENSG00000135069|Q9Y617-2|PSAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.75821510634995	2	497.758215	993.501877	1.3968	0.00069525	1.5479	0.00077046	2.9446	0.0014657	497.7583460257849	18.746	0.19219	18.731	18.731	18.924	-0.014059	1317	82	0.8265074	0.049830556	0.82498795	335.63956	0	20.23587						233	9	3	NaN	NaN	NaN	0.72043	1	8176	8176		17.78	1.1962	1	33404	+		2190	9603	1273	1294	1686	1686					0.004866415951369163
DIIGKFDF	8	Unmodified	_DIIGKFDF_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.750193109	2	477.750193	953.485833	1.1268	0.00053833	-3.0732	-0.0014682	-1.9464	-0.00092988	477.74875197359466	37	0.14444	37	36.976	37.121	0	1323	58	0.8228144	0.035077274	0.8228144	334.33133	0	14.252838						162	7	3	NaN	NaN	NaN	0.69898	1	7163	7163		19.118	2.7017	1	13096	+		2191	9148	1274	1295	1687	1687					0.007229801489074816
DIIGKFDF	8	Unmodified						0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.750193	953.485833	1.1268	0.00053833	-3.0732	-0.0014682	-1.9464	-0.00092988	477.74875197359466	37	0.14444	37	36.976	37.121	0	1323	58	0.8228144	0.035077274	0.8228144	334.33133		14.252838	2.2715E-05	-0.00082095	0.00075972	NaN	19.118	162	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13096	+		2192	9148	1274	1295							0.007229801489074816
DIISIFWN	8	Unmodified	_DIISIFWN_					0	0	0		chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|13	chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|13	chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.26346765975	2	504.263468	1006.51238	1.2358	0.00062319	2.4629	0.0012419	3.6987	0.0018651	504.7677482508802	20.525	0.12029	20.511	20.463	20.584	-0.014141	1311	73	0.83019954	0.044291377	0.8286801	337.07938	0	17.983307						268	6	3	NaN	NaN	NaN	0.69898	1	8670	8670		19.118	3.9429	1	98581			2193	154	1275	1296	1688	1688					0.009386690402379827
DIKNGLVVFP	10	Unmodified	_DIKNGLVVFP_					0	0	0			REV__ENSG00000075785|ENST00000265062|RAB7A	REV__ENSG00000075785|ENST00000265062|RAB7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3187742007002	2	551.318774	1100.623	1.4633	0.00080675	-9.3756	-0.0051689	-7.9123	-0.0043622	551.3148067600163	20.237	0.16853	20.222	20.126	20.295	-0.014143	1221	118	0.885486	0.07177544	0.88396657	359.1121	0	29.108765						250	8	2	NaN	NaN	NaN	0.62764	1	12540	12540		13.003	0.41496	1	44901	+		2194	8614	1276	1297	1689	1689					0.07670889028486272
DILDNRYKNFI	11	Unmodified	_DILDNRYKNFI_					0	0	0			REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.8724335097	2	705.872434	1409.73031	1.2219	0.00086251	-8.571	-0.00605	-7.3491	-0.0051875	705.8657162590215	25.057	0.072371	25.057	25.033	25.105	0	1056	40	0.9863805	0.023773253	0.9863805	398.94366	0	9.615173						97	4	3	NaN	NaN	NaN	0.73057	1	20146	20146		5.4499	0.43306	1	8177.8	+		2195	13166	1277	1298	1690	1690					0.04183814172029088
DINPFLVLT	9	Unmodified	_DINPFLVLT_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-4|GNE	REV__nc|ENSG00000159921|Q9Y223-4|GNE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5771737317998	1	1031.57717	1030.5699	1.1055	0.0011404	-3.5843	-0.0036975	-2.4788	-0.002557	1031.5759746574197	31.477	0.19307	31.477	31.38	31.573	0	177	88	1.5139546	0.051386952	1.5139546	307.25674	0	10.428986						299	9	2	NaN	NaN	NaN	0.03618	1	9812	9812		52.78	2.4646	1	88749	+		2196	10190	1278	1299	1691	1691					0.05583511245799855
DIPHGHHQGI	10	Unmodified	_DIPHGHHQGI_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.5439165435	1	1110.54392	1109.53664	0.40091	0.00044523	1.1516	0.0012789	1.5525	0.0017242	1110.5454454050118	31.717	0.072412	31.712	31.688	31.761	-0.0044155	72	58	1.5758814	0.03355682	1.5743619	319.524	0	6.803955						131	4	2	NaN	NaN	NaN	0.44258	1	12880	12880		21.835	1.3863	1	11967	+		2197	13088	1279	1300	1692	1692					-0.013746777535288857
DIPSIITKK	9	Unmodified	_DIPSIITKK_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;SNX14|p.G528Wfs*4|1|0.29|ENSG00000135317|chr6:85536818-85536819|-/A|frameshift_variant	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.81332468205	2	507.813325	1013.6121	2.3807	0.001209	-1.6208	-0.00082306	0.75992	0.0003859	507.81248336681534	18.412	0.096008	18.412	18.364	18.46	0	1293	40	0.84127116	0.02398467	0.84127116	341.54248	0	9.737396						70	5	2	NaN	NaN	NaN	0.54912	1	9138	9138		7.5876	3.1745	1	5940.6			2198	2930	1280	1301	1693	1693					0.10583486654184071
DIPSIITKK	9	Unmodified	_DIPSIITKK_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;SNX14|p.G528Wfs*4|1|0.29|ENSG00000135317|chr6:85536818-85536819|-/A|frameshift_variant	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.81332468205	2	507.813325	1013.6121	2.0366	0.0010342	-1.995	-0.0010131	0.041577	2.1113E-05	507.8119076280819	18.434	0.12009	18.42	18.372	18.492	-0.01395	1296	31	0.8394264	0.01844871	0.83790696	340.79352	0	7.4898987						78	6	2	NaN	NaN	NaN	0.31471	1	8965	8965		17.97	7.3647	1	6485.2			2199	2930	1280	1301	1694	1694					0.10583486654184071
DIRGLLIMTE	10	Unmodified	_DIRGLLIMTE_					0	0	0		ENST00000490021.2_1_1:110230450-110231321:+|nuORF	ENST00000490021.2_1_1:110230450-110231321:+|nuORF	ENST00000490021.2_1_1:110230450-110231321:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8208237506502	2	580.820824	1159.62709	1.5324	0.00089005	-8.6637	-0.005032	-7.1313	-0.004142	580.8157785621795	36.88	0.12024	36.88	36.856	36.976	0	1203	37	0.8965218	0.022062063	0.8965218	363.35883	0	8.941742						97	6	3	NaN	NaN	NaN	0.507	1	15138	15138		19.164	0.045272	1	6878			2200	7259	1281	1302	1695	1695					0.053666104598960374
DISEDWSL	8	Unmodified	_DISEDWSL_					0	0	0		ENSG00000170965|ENST00000359237|PLAC1	ENSG00000170965|ENST00000359237|PLAC1	ENSG00000170965|ENST00000359237|PLAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4258180472001	1	964.425818	963.418542	1.2269	0.0011833	-0.064154	-6.1872E-05	1.1628	0.0011214	964.4262049030109	29.328	0.12064	29.32	29.296	29.417	-0.0077209	342	46	1.4161754	0.026746511	1.4146559	287.67688	0	5.433197						103	6	2	NaN	NaN	NaN	0.09307	1	7266	7266		65.672	21.425	1	9255.2			2201	4759	1282	1303	1696	1696					-0.06463094852699669
DISPDFQL	8	Unmodified	_DISPDFQL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4516388672001	1	934.451639	933.444362	1.4777	0.0013808	0.49821	0.00046555	1.9759	0.0018464	934.452475573097	29.232	0.096508	29.232	29.208	29.305	0	321	85	1.4286518	0.04990816	1.4286518	290.34265	0	10.142761						220	5	3	NaN	NaN	NaN	0.048369	1	6684	6684		79.199	9.4166	1	26426			2202	4301	1283	1304	1697	1697					-0.025022006104222783
DISPDFQL	8	Unmodified	_DISPDFQL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4516388672001	1	934.451639	933.444362	1.3059	0.0012203	-1.133	-0.0010587	0.17291	0.00016158	934.4510816882287	29.231	0.12065	29.224	29.2	29.32	-0.0077209	321	70	1.4286518	0.040985107	1.4271324	290.34265	0	8.329346						202	6	3	NaN	NaN	NaN	2.6365E-10	1	6538	6538		143.88	14.256	1	26203			2203	4301	1283	1304	1698	1698					-0.025022006104222783
DISPPIFRR	9	Unmodified	_DISPPIFRR_					0	0	0		ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.8141903493	2	550.81419	1099.61383	1.4975	0.00082484	-3.2312	-0.0017798	-1.7337	-0.00095497	550.8123684336964	20.189	0.21621	20.189	20.045	20.261	0	1215	109	0.8891654	0.06627929	0.8891654	360.60834	0	26.880096						522	10	4	NaN	NaN	NaN	0.026469	1	12838	12838		63.731	33.12	1	92680			2204	3895	1284	1305	1699	1699					0.06800540462791105
DISPPIFRR	9	Unmodified	_DISPPIFRR_					0	0	0		ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.54521905506664	3	367.545219	1099.61383	1.5929	0.00058545	-3.2303	-0.0011873	-1.6374	-0.00060183	367.54434219054	20.213	0.21624	20.213	20.093	20.309	0	1461	61	0.7376554	0.037130177	0.7376554	448.73825	0	22.587402						212	10	3	NaN	NaN	NaN	0.10956	1	12839	12839		24.4	10.359	1	30679			2205	3895	1284	1305	1700	1700					0.06800540462791105
DISPPIFRR	9	Unmodified	_DISPPIFRR_					0	0	0		ENST00000520106.5_1_8:134062145-134072405:-|nuORF;ENST00000519504.5_1_8:134063059-134072525:-|nuORF;ENST00000518565.5_1_8:134061382-134114810:-|nuORF;ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	ENST00000520106.5_1_8:134062145-134072405:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.54521905506664	3	367.545219	1099.61383	1.6828	0.00061851	-1.159	-0.000426	0.52377	0.00019251	367.54503148614515	20.237	0.14439	20.222	20.15	20.295	-0.014143	1461	55	0.7376554	0.03341353	0.73613596	448.73822	0	20.326477						120	7	2	NaN	NaN	NaN	0.10956	1	12507	12507		24.4	8.5783	1	26268			2206	3895	1284	1305	1701	1701					0.06800540462791105
DIVKGDPEL	9	Unmodified	_DIVKGDPEL_					0	0	0		MINK1-ALOX12|1|fusion;ENSG00000108839|ENST00000251535|ALOX12	MINK1-ALOX12|1|fusion	MINK1-ALOX12|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.263664625	2	493.263665	984.512776	1.8116	0.00089359	-2.7489	-0.001356	-0.93735	-0.00046236	493.2617776430854	19.997	0.09614	19.997	19.972	20.069	0	1320	58	0.824661	0.035092473	0.824661	334.93152	0	14.2526245						162	5	3	NaN	NaN	NaN	0.052553	1	8032	8032		45.827	5.6728	1	27118			2207	1699	1285	1306	1702	1702					0.01990043969431099
DIVKGDPEL	9	Unmodified						0	0	0		MINK1-ALOX12|1|fusion;ENSG00000108839|ENST00000251535|ALOX12	MINK1-ALOX12|1|fusion	MINK1-ALOX12|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.263665	984.512776	1.0001	0.00049334	-0.53887	-0.00026581	0.46127	0.00022753	493.2635907803257	19.996	0.12035	19.982	19.958	20.078	-0.014141	1323	58	0.8228144	0.035092473	0.82129496	334.18155		14.2526245	-0.0073911	0.0011245	-0.001683	NaN	45.827	167	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25395			2208	1699	1285	1306							0.01990043969431099
DIYFNPKTR	9	Unmodified	_DIYFNPKTR_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.30365545275	2	577.303655	1152.59276	1.8501	0.0010681	-1.1725	-0.00067688	0.67758	0.00039117	577.3025941005635	16.925	0.16788	16.925	16.877	17.045	0	1164	34	0.9204082	0.020196259	0.9204082	373.06665	0	8.186127						125	8	3	NaN	NaN	NaN	0.2961	1	14893	14893		19.164	11.623	1	11669			2209	1702	1286	1307	1703	1703					0.02256530363274578
DIYFNPKTR	9	Unmodified	_DIYFNPKTR_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.20486245736663	3	385.204862	1152.59276	1.9973	0.00076935	-0.88077	-0.00033928	1.1165	0.00043008	385.2052303307522	16.946	0.1199	16.933	16.885	17.005	-0.013294	1407	31	0.77102906	0.018522859	0.7695096	468.774	0	11.261597						82	6	2	NaN	NaN	NaN	0.18779	1	14393	14393		23.086	20.382	1	6030.6			2210	1702	1286	1307	1704	1704					0.02256530363274578
DIYFNPKTR	9	Unmodified	_DIYFNPKTR_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.30365545275	2	577.303655	1152.59276	1.6692	0.00096361	0.88612	0.00051156	2.5553	0.0014752	577.3029807611206	16.946	0.14388	16.933	16.885	17.029	-0.013294	1161	43	0.9222442	0.025705755	0.92072475	373.81085	0	10.41922						129	7	3	NaN	NaN	NaN	0.059222	1	14395	14395		42.995	23.831	1	11378			2211	1702	1286	1307	1705	1705					0.02256530363274578
DIYFNPKTR	9	Unmodified						0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	385.204862	1152.59276	1.8192	0.00070077	-3.789	-0.0014595	-1.9698	-0.00075877	385.2038050157329	16.925	0.04796	16.925	16.877	16.925	0	1410	31	0.76917666	0.018524826	0.76917666	467.64777		11.262817	-0.0036682	-0.00097978	-0.00016647	NaN	23.086	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2916.8			2212	1702	1286	1307							0.02256530363274578
DIYGPLILF	9	Unmodified	_DIYGPLILF_					0	0	0			REV__ENST00000485500.1_1_3:49066148-49066789:-|nuORF	REV__ENST00000485500.1_1_3:49066148-49066789:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7971433016	2	525.797143	1049.57973	1.0759	0.0005657	-1.9263	-0.0010129	-0.85045	-0.00044716	525.7967977763961	31.983	0.24133	31.983	31.911	32.152	0	1248	70	0.8689189	0.04237026	0.8689189	352.605	0	17.193726						375	11	3	NaN	NaN	NaN	0.12945	1	10629	10629		31.561	0	1	51974	+		2213	10780	1287	1308	1706	1706					0.056926992511762364
DKAVEYGLI	9	Unmodified	_DKAVEYGLI_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.27403234605	2	504.274032	1006.53351	1.3844	0.0006981	-2.1116	-0.0010648	-0.72723	-0.00036673	504.27345003419623	29.474	0.14483	29.474	29.425	29.57	0	1263	49	0.85970795	0.02948296	0.85970795	349.0604	0	11.970703						136	7	3	NaN	NaN	NaN	0.54912	1	8844	8844		7.5876	0.72439	1	14168			2214	3276	1288	1309	1707	1707					0.030506343490856125
DKCKDYPFL	9	Unmodified	_DKCKDYPFL_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.85132031673334	3	376.85132	1127.53213	1.6496	0.00062167	5.2285	0.0019704	6.8782	0.002592	376.8538517021645	21.272	0.14428	21.258	21.21	21.354	-0.014004	1443	40	0.7487872	0.024114966	0.7472678	455.37064	0	14.665405						93	7	2	NaN	NaN	NaN	0.46215	1	13553	13553		7.1304	1.6804	1	6952.9	+		2215	10472	1289	1310	1708	1708					-0.02653323011327302
DKCKDYPFL	9	Unmodified						0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	376.85132	1127.53213	1.3815	0.00052061	4.6772	0.0017626	6.0587	0.0022832	376.8531020459406	21.248	0.072258	21.248	21.2	21.272	0	1440	49	0.7506418	0.029678345	0.7506418	456.4985		18.048706	-0.0051223	-0.00022682	0.001687	NaN	7.1304	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5474.2	+		2216	10472	1289	1310							-0.02653323011327302
DKCKDYPFL	9	Unmodified						0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	376.85132	1127.53213	1.6496	0.00062167	5.2285	0.0019704	6.8782	0.002592	376.8538517021645	21.272	0.14428	21.258	21.21	21.354	-0.014004	1443	40	0.7487872	0.024114966	0.7472678	455.37064		14.665405	0.0051223	0.00039647	-0.001687	NaN	7.1304	93	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6952.9	+		2217	10472	1289	1310							-0.02653323011327302
DKDHPGSSVK	10	Unmodified	_DKDHPGSSVK_					0	0	0		nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	nc|ENSG00000136531|Q99250-2|SCN2A	nc|ENSG00000136531|Q99250-2|SCN2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.18060545316666	3	357.180605	1068.51999	1.8955	0.00067702	2.7158	0.00097003	4.6113	0.0016471	357.1820398464122	16.518	0.071875	16.518	16.47	16.542	0	1497	25	0.71537006	0.0148682	0.71537006	435.33777	0	9.048035						39	4	2	NaN	NaN	NaN	0.64611	1	11491	11491		6.8076	2.4974	1	3961.4			2218	3025	1290	1311	1709	1709					-0.01153223430151229
DKDSLGDEML	10	Unmodified	_DKDSLGDEML_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.75280376495	2	561.752804	1121.49105	0.67309	0.00037811	5.6427	0.0031698	6.3158	0.0035479	561.7546508871729	31.982	0.19303	31.979	31.882	32.075	-0.0037594	1239	64	0.87444305	0.038656652	0.8729236	354.55188	0	15.673706						247	9	3	NaN	NaN	NaN	0.24484	1	13327	13327		31.675	2.0771	1	27765			2219	4490	1291	1312	1710	1710					-0.06483128841455255
DKEYGEHVHQL	11	Unmodified	_DKEYGEHVHQL_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.8229406281501	2	677.822941	1353.63133	1.6181	0.0010968	-8.0443	-0.0054526	-6.4261	-0.0043558	677.816113093809	19.924	0.048147	19.924	19.9	19.948	0	1119	43	0.9479278	0.025661409	0.9479278	383.5457	0	10.382965						87	3	3	NaN	NaN	NaN	0.77378	1	19585	19585		1.3312	0	1	7404.2	+		2220	10421	1292	1313	1711	1711					-0.03134208792835125
DKFLSHVIS	9	Unmodified	_DKFLSHVIS_					0	0	0		ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2874740723	2	523.287474	1044.5604	2.0089	0.0010512	-4.0763	-0.0021331	-2.0674	-0.0010818	523.28439751455	23.2	0.24117	23.2	23.103	23.345	0	1299	97	0.8375814	0.058991432	0.8375814	339.90952	0	23.940033						378	11	3	NaN	NaN	NaN	0.31471	1	10415	10415		17.97	1.3855	1	91377			2221	987	1293	1314	1712	1712					0.03989742960266085
DKFLSHVIS	9	Unmodified						0	0	0		ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.287474	1044.5604	1.833	0.00095916	-4.482	-0.0023454	-2.6491	-0.0013862	523.2844222536437	23.223	0.19301	23.21	23.162	23.355	-0.013294	1287	100	0.8449601	0.060838223	0.84344065	342.90396		24.689514	0.0051305	-0.0002116	0.0029296	NaN	17.97	449	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102680			2222	987	1293	1314							0.03989742960266085
DKFNVTKPI	9	Unmodified	_DKFNVTKPI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3031241365001	2	531.303124	1060.5917	0.99679	0.0005296	-3.0167	-0.0016028	-2.0199	-0.0010732	531.3015318459709	33.287	0.12067	33.287	33.238	33.359	0	1260	37	0.8615505	0.022109807	0.8615505	349.56796	0	8.970886						126	6	3	NaN	NaN	NaN	0.27608	1	11140	11140		20.449	2.6497	1	16442			2223	5606	1294	1315	1713	1713					0.06382315994369492
DKFNVTKPI	9	Unmodified						0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.303124	1060.5917	0.34887	0.00018536	-2.8938	-0.0015375	-2.545	-0.0013521	531.3018150076947	33.261	0.12064	33.259	33.235	33.355	-0.0024757	1257	40	0.86339295	0.023948371	0.8618735	350.3155		9.716888	-0.013959	7.1054E-05	0.00016147	NaN	20.449	123	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15733			2224	5606	1294	1315							0.06382315994369492
DKFVPVEEDQR	11	Unmodified	_DKFVPVEEDQR_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000127220|ENST00000247706|ABHD8	MYO9B-ABHD8|1|fusion	MYO9B-ABHD8|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.5613745001	3	454.561375	1360.66229	0.96489	0.0004386	8.5272	0.0038761	9.4921	0.0043147	454.56531060673933	12.462	0.12014	12.453	12.429	12.549	-0.0088415	1389	55	0.7821392	0.03332305	0.78061974	474.6693	0	20.223297						109	6	2	NaN	NaN	NaN	0.72342	1	18787	18787		2.5605	0	1	10768			2225	7890	1295	1316	1714	1714					-0.003610554786064313
DKHQGMLDELQ	11	Unmodified	_DKHQGMLDELQ_					0	0	0			REV__nc|ENSG00000171772|Q8N0S2-3|SYCE1	REV__nc|ENSG00000171772|Q8N0S2-3|SYCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3113514866001	2	657.311351	1312.60815	1.3015	0.00085549	6.4742	0.0042555	7.7756	0.005111	657.3158788773487	21.416	0.12048	21.402	21.402	21.523	-0.014004	1143	70	0.9332562	0.04218763	0.93173677	377.72855	0	17.075134						150	6	3	NaN	NaN	NaN	0.61966	1	18154	18154		21.85	9.2807	1	14186	+		2226	10632	1296	1317	1715	1715					-0.035649709018343856
DKIGSTSGAE	10	Unmodified	_DKIGSTSGAE_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.73272863734996	2	482.732729	963.450904	1.6887	0.00081518	-7.0605	-0.0034083	-5.3718	-0.0025932	482.7296666646141	20.237	0.12017	20.237	20.165	20.285	0	1359	40	0.8006399	0.024036646	0.8006399	325.27344	0	9.765289						89	6	2	NaN	NaN	NaN	0.77665	1	7424	7424		1.3312	0.089322	1	6870.4			2227	2037	1297	1318	1716	1716					-0.03228307449717249
DKKAPAGG	8	Unmodified	_DKKAPAGG_					0	0	0		ENST00000607332.1_1_6:100016396-100016693:+|nuORF	ENST00000607332.1_1_6:100016396-100016693:+|nuORF	ENST00000607332.1_1_6:100016396-100016693:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.20595278085	2	372.205953	742.397353	1.6958	0.00063118	-2.9201	-0.0010869	-1.2243	-0.00045569	372.2047988332961	55.196	0.14425	55.196	55.172	55.316	0	1434	49	0.75435036	0.02966547	0.75435036	307.7479	0	12.1024475						174	7	3	NaN	NaN	NaN	0.84651	1	3954	3954		1.6704	0	1	36378			2228	7786	1298	1319	1717	1717					0.015849846290961978
DKKTGVIEHE	10	Unmodified	_DKKTGVIEHE_					0	0	0		DAB2|p.E107K|1|0.14|ENSG00000153071|chr5:39392376-39392376|C/T|missense_variant	DAB2|p.E107K|1|0.14|ENSG00000153071|chr5:39392376-39392376|C/T|missense_variant	DAB2|p.E107K|1|0.14|ENSG00000153071|chr5:39392376-39392376|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.303852418	2	578.303852	1154.59315	0.98984	0.00057243	-8.1487	-0.0047124	-7.1588	-0.00414	578.2988798201853	32.537	0.12067	32.534	32.486	32.607	-0.0031052	1146	43	0.93142134	0.025689125	0.9299019	377.5229	0	10.4122925						105	6	2	NaN	NaN	NaN	0.76892	1	14476	14476		3.2116	0	1	10406			2229	245	1299	1320	1718	1718					0.022039052924583302
DKLKVSSPE	9	Unmodified	_DKLKVSSPE_					0	0	0		ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	ENST00000538571.6_1_14:58909433-59003756:+|nuORF	ENST00000538571.6_1_14:58909433-59003756:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.77693917575	2	501.776939	1001.53933	1.3392	0.00067196	-3.0308	-0.0015208	-1.6916	-0.0008488	502.27457902771	21.729	0.14446	21.715	21.643	21.788	-0.013897	1308	49	0.83204526	0.029530823	0.8305259	337.85144	0	11.990967						107	7	2	NaN	NaN	NaN	0.56671	1	8485	8485		6.8632	0	1	11270			2230	1258	1300	1321	1719	1719					0.038617328607642776
DKLPDVGPS	9	Unmodified	_DKLPDVGPS_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4781879687001	1	927.478188	926.470912	1.8023	0.0016716	-0.56995	-0.00052861	1.2324	0.001143	927.4775837106372	20.285	0.12019	20.285	20.237	20.357	0	333	46	1.4215236	0.026735067	1.4215236	288.9256	0	5.4339294						101	6	2	NaN	NaN	NaN	0.56671	1	6519	6519		6.8632	0.613	1	7663.3	+		2231	8321	1301	1322	1720	1720					0.004734882809088958
DKLPDVGPS	9	Unmodified						0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	927.478188	926.470912	1.8023	0.0016716	-0.56995	-0.00052861	1.2324	0.001143	927.4775837106372	20.285	0.12019	20.285	20.237	20.357	0	333	46	1.4215236	0.026735067	1.4215236	288.9256		5.4339294	0.0071561	0.00023791	0.018603	NaN	6.8632	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7663.3	+		2232	8321	1301	1322							0.004734882809088958
DKLPDVGPS	9	Unmodified						0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	927.478188	926.470912	1.6149	0.0014977	-1.0169	-0.00094314	0.59797	0.0005546	927.4768560574172	20.285	0.12035	20.271	20.246	20.367	-0.014141	393	34	1.3858368	0.019649625	1.3843174	281.67227		3.993805	-0.0071561	-0.00017661	-0.018603	NaN	6.8632	61	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3841.3	+		2233	8321	1301	1322							0.004734882809088958
DKLRQECLLSR	11	Unmodified	_DKLRQECLLSR_					0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.87191058095	2	680.871911	1359.72927	1.1954	0.00081392	0.47208	0.00032143	1.6675	0.0011353	680.87172257182	41.089	0.096119	41.089	41.065	41.161	0	1185	25	0.90755045	0.014701664	0.90755045	367.19174	0	5.9482727						44	5	2	NaN	NaN	NaN	0.74155	1	19682	19682		4.7291	0	1	2459.6	+		2234	9775	1302	1323	1721	1721					0.06379276531470168
DKLRQECLLSR	11	Unmodified						0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	680.871911	1359.72927	1.1954	0.00081392	0.47208	0.00032143	1.6675	0.0011353	680.87172257182	41.089	0.096119	41.089	41.065	41.161	0	1185	25	0.90755045	0.014701664	0.90755045	367.19174		5.9482727	0	0	0	NaN	4.7291	44	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2459.6	+		2235	9775	1302	1323							0.06379276531470168
DKPEEQWWN	9	Unmodified	_DKPEEQWWN_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.18412701526665	3	411.184127	1230.53055	1.3932	0.00057284	7.7367	0.0031812	9.1298	0.003754	411.1870654727218	28.653	0.072372	28.653	28.629	28.701	0	1527	49	0.69677675	0.029765487	0.69677675	423.3128	0	18.083435						73	4	2	NaN	NaN	NaN	0.56671	1	17260	17260		3.9281	1.2239	1	5682			2236	4534	1303	1324	1722	1722					-0.07549240775711041
DKRCPTIL	8	Unmodified	_DKRCPTIL_					0	0	0			REV__tr|U7SUG4|U7SUG4_FUSNUNitronatemonooxygenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01225PE=4SV=1	REV__tr|U7SUG4|U7SUG4_FUSNUNitronatemonooxygenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01225PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.262944731	2	473.262945	944.511337	1.2522	0.00059261	-5.7545	-0.0027234	-4.5023	-0.0021308	473.26007650103753	23.995	0.12059	23.995	23.971	24.092	0	1326	40	0.8209676	0.024008036	0.8209676	333.626	0	9.756439						78	6	2	NaN	NaN	NaN	0.7718	1	6935	6935		13.003	1.4544	1	5820.6	+		2237	13517	1304	1325	1723	1723					0.03686131399683745
DKRNSVYFAS	10	Unmodified	_DKRNSVYFAS_					0	0	0			REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8	REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.7961945614001	2	593.796195	1185.57784	1.0782	0.00064024	8.4674	0.0050279	9.5456	0.0056681	593.8015463849456	22.838	0.21693	22.824	22.776	22.993	-0.01354	1140	70	0.93509084	0.0422104	0.9335714	378.8932	0	17.103394						224	10	2	NaN	NaN	NaN	0.57785	1	15418	15418		20.449	4.986	1	48760	+		2238	8731	1305	1326	1724	1724					-0.00752961504713312
DKRPVEKVSW	10	Unmodified	_DKRPVEKVSW_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.23130010853333	3	415.2313	1242.67207	1.6861	0.00070011	-10.713	-0.0044486	-9.0274	-0.0037484	415.22643646670855	19.659	0.096241	19.645	19.621	19.717	-0.014143	1455	28	0.7413668	0.016702175	0.73984736	450.35394	0	10.146027						63	5	2	NaN	NaN	NaN	0.77144	1	16859	16859		1.1021	0.31028	1	4636.8			2239	13963	1306	1327	1725	1725					0.0604417731740341
DKYSFQRFY	9	Unmodified	_DKYSFQRFY_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3011127638001	2	627.301113	1252.58767	1.4102	0.00088463	-10.126	-0.0063523	-8.7162	-0.0054677	627.7946270612996	27.495	0.19311	27.495	27.398	27.591	0	1152	76	0.92775106	0.045875907	0.92775106	375.68784	0	18.57721						254	9	4	NaN	NaN	NaN	0.59509	1	17841	17841		5.6942	1.2811	1	20885			2240	3755	1307	1328	1726	1726					-0.028517734993329213
DLACTLSLV	9	Unmodified	_DLACTLSLV_					0	0	0			REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4913951919002	1	934.491395	933.484119	1.8973	0.001773	-2.5935	-0.0024236	-0.69619	-0.00065058	934.4891248705017	25.346	0.072378	25.346	25.322	25.395	0	327	61	1.425088	0.03564489	1.425088	289.61823	0	7.244049						95	4	2	NaN	NaN	NaN	0.29681	1	6691	6691		19.118	1.338	1	9482.8	+		2241	11989	1308	1329	1727	1727					0.014716030686599879
DLACTLSLV	9	Unmodified						0	0	0			REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.491395	933.484119	1.8973	0.001773	-2.5935	-0.0024236	-0.69619	-0.00065058	934.4891248705017	25.346	0.072378	25.346	25.322	25.395	0	327	61	1.425088	0.03564489	1.425088	289.61823		7.244049	0.0061395	-0.00021425	0.0016508	NaN	19.118	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9482.8	+		2242	11989	1308	1329							0.014716030686599879
DLAISTRQ	8	Unmodified	_DLAISTRQ_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.2483489118	2	452.248349	902.482145	2.0531	0.0009285	0.52641	0.00023807	2.5795	0.0011666	452.248367938789	17.642	0.11998	17.628	17.508	17.628	-0.013786	1377	34	0.7895419	0.020354152	0.78802246	321.06934	0	8.277069						60	6	2	NaN	NaN	NaN	0.82212	1	6000	6000		6.2502	0.78436	1	3932.9			2243	3318	1309	1330	1728	1728					0.0270031037505305
DLAKIIFKR	9	Unmodified	_DLAKIIFKR_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.5693646089333	3	368.569365	1102.68626	1.7459	0.00064347	-4.3083	-0.0015879	-2.5625	-0.00094445	368.5678952281709	19.997	0.048086	19.997	19.972	20.021	0	1440	31	0.7506418	0.018546999	0.7506418	456.62253	0	11.282318						53	3	2	NaN	NaN	NaN	0.47587	1	12965	12965		6.4299	0.17972	1	5697.8			2244	2793	1310	1331	1729	1729					0.13902874536347554
DLALHKEDM	9	Unmodified	_DLALHKEDM_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2605990073	2	536.260599	1070.50665	0.80806	0.00043333	1.2527	0.00067178	2.0608	0.0011051	536.2611386827058	29.424	0.12066	29.417	29.368	29.489	-0.0077209	1266	52	0.85786515	0.031330705	0.8563457	348.0313	0	12.710693						163	6	3	NaN	NaN	NaN	0.58159	1	11281	11281		6.2502	0.55606	1	24445			2245	1463	1311	1332	1730	1730					-0.025787975337379976
DLALPSPEL	9	Unmodified	_DLALPSPEL_					0	0	0		sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.514239124	1	954.514239	953.506963	1.6904	0.0016135	-0.85562	-0.0008167	0.83476	0.00079679	954.5133575686912	36.471	0.3134	36.471	36.422	36.736	0	318	163	1.4304334	0.096190214	1.4304334	290.61578	0	19.542633						838	14	4	NaN	NaN	NaN	0.062072	1	7169	7169		41.785	5.198	1	169160			2246	13684	1312	1333	1731	1731					0.028349454577551114
DLALPSPEL	9	Unmodified	_DLALPSPEL_					0	0	0		sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.514239124	1	954.514239	953.506963	1.8728	0.0017877	-1.1262	-0.001075	0.74666	0.0007127	954.5126642890895	36.469	0.33716	36.47	36.398	36.735	0.0016785	315	148	1.4322147	0.08725119	1.4306953	290.9777	0	17.726501						783	15	4	NaN	NaN	NaN	0.10956	1	7027	7027		34.439	0.74048	1	153310			2247	13684	1312	1333	1732	1732					0.028349454577551114
DLAPPLRW	8	Unmodified	_DLAPPLRW_					0	0	0			REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5359776191001	1	967.535978	966.528701	0.72083	0.00069743	-10.063	-0.0097359	-9.3418	-0.0090385	967.525380002932	33.358	0.096508	33.355	33.283	33.379	-0.0024796	231	127	1.4820169	0.074671626	1.4804975	301.0381	0	15.167847						139	5	2	NaN	NaN	NaN	0.8439	1	7379	7379		3.1533	0.36816	1	10213	+		2248	11639	1313	1334	1733	1733					0.04409794996990968
DLAPPLRW	8	Unmodified						0	0	0			REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	967.535978	966.528701	0.97451	0.00094287	-10.627	-0.010282	-9.6524	-0.0093391	967.5250463189961	33.359	0.096539	33.359	33.287	33.383	0	237	139	1.4784646	0.08180058	1.4784646	300.3165		16.615936	0.0019127	-0.0002826	-0.0010165	NaN	3.1533	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10022	+		2249	11639	1313	1334							0.04409794996990968
DLAPPLRW	8	Unmodified						0	0	0			REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	967.535978	966.528701	0.72083	0.00069743	-10.063	-0.0097359	-9.3418	-0.0090385	967.525380002932	33.358	0.096508	33.355	33.283	33.379	-0.0024796	231	127	1.4820169	0.074671626	1.4804975	301.0381		15.167847	-0.0019127	0.00026341	0.0010165	NaN	3.1533	139	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10213	+		2250	11639	1313	1334							0.04409794996990968
DLAQVVDEL	9	Unmodified	_DLAQVVDEL_					0	0	0		ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47666536-47687014:-|nuORF;MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5149674055	1	1001.51497	1000.50769	2.2792	0.0022826	4.0586	0.0040647	6.3378	0.0063474	1001.5199274001453	25.926	0.33787	25.926	25.853	26.191	0	255	70	1.4678029	0.0408808	1.4678029	298.00842	0	8.300018						281	15	3	NaN	NaN	NaN	0.01966	1	8612	8612		72.428	19.649	1	25814			2251	4059	1314	1335	1734	1734					0.007457401068108993
DLAQVVDEL	9	Unmodified	_DLAQVVDEL_					0	0	0		ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47666536-47687014:-|nuORF;MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5149674055	1	1001.51497	1000.50769	2.2965	0.0023	3.9805	0.0039865	6.277	0.0062865	1001.519942427184	25.925	0.19308	25.914	25.89	26.083	-0.0116	252	67	1.4695803	0.039101243	1.4680609	298.3693	0	7.9387207						218	9	3	NaN	NaN	NaN	0.054111	1	8446	8446		45.165	9.8684	1	23163			2252	4059	1314	1335	1735	1735					0.007457401068108993
DLAVNEDP	8	Unmodified	_DLAVNEDP_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.3996032967	1	872.399603	871.392327	1.028	0.0008968	2.2408	0.0019549	3.2688	0.0028517	872.4004637798124	31.839	0.048252	31.839	31.839	31.887	0	387	52	1.389409	0.030367494	1.389409	282.65952	0	6.1779175						76	3	2	NaN	NaN	NaN	0.6117	1	5675	5675		24.562	6.763	1	7166.3			2253	4375	1315	1336	1736	1736					-0.04851364024193572
DLAVNEDP	8	Unmodified	_DLAVNEDP_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.3996032967	1	872.399603	871.392327	0.54948	0.00047936	1.2106	0.0010561	1.76	0.0015355	872.4007380705568	31.838	0.096512	31.833	31.809	31.906	-0.0044155	387	67	1.389409	0.039301276	1.3878895	282.65952	0	7.9954224						93	5	2	NaN	NaN	NaN	0.78546	1	5536	5536		11.17	0.56537	1	7779.4			2254	4375	1315	1336	1737	1737					-0.04851364024193572
DLAVYVEF	8	Unmodified	_DLAVYVEF_					0	0	0		JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4771253362001	1	955.477125	954.469849	1.3805	0.001319	-0.10524	-0.00010055	1.2752	0.0012185	955.4766848466363	28.894	0.16895	28.885	28.861	29.03	-0.0083485	297	79	1.4428991	0.046289206	1.4413797	293.1442	0	9.404266						318	8	4	NaN	NaN	NaN	0.16485	1	7045	7045		52.758	5.7181	1	67768			2255	4819	1316	1337	1738	1738					-0.009207260879975365
DLCERRRGVWW	11	Unmodified	_DLCERRRGVWW_					0	0	0		ENST00000389484.7_1_2:142888649-142888757:-|nuORF	ENST00000389484.7_1_2:142888649-142888757:-|nuORF	ENST00000389484.7_1_2:142888649-142888757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.58233843453337	3	492.582338	1474.72519	1.5917	0.00078404	-1.1719	-0.00057727	0.41975	0.00020676	492.5815217722932	12.148	0.096048	12.148	12.1	12.196	0	1350	34	0.80618626	0.020334303	0.80618626	488.883	0	12.331024						77	5	2	NaN	NaN	NaN	0.76654	1	20498	20498		0.88464	0	1	6728.1			2256	6749	1317	1338	1739	1739					0.006812318284346475
DLDAFLDWL	9	Unmodified	_DLDAFLDWL_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2714896571	2	554.27149	1106.52843	1.4245	0.00078955	3.6553	0.0020261	5.0798	0.0028156	554.2731378618391	14.38	0.14369	14.369	14.321	14.465	-0.011219	1269	37	0.8560222	0.022117019	0.85450274	347.13995	0	8.969025						98	7	2	NaN	NaN	NaN	0.45297	1	12757	12757		11.548	0.58334	1	7310.5			2257	4061	1318	1339	1740	1740					-0.020576695135332557
DLEEDDQEVL	10	Unmodified	_DLEEDDQEVL_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.76442269625	2	602.764423	1203.51429	1.6044	0.00096709	-5.1402	-0.0030983	-3.5358	-0.0021312	602.7610950129015	18.122	0.14403	18.108	18.06	18.204	-0.013948	1200	58	0.89836043	0.034929693	0.896841	363.9479	0	14.150909						228	7	4	NaN	NaN	NaN	0.66626	1	15919	15919		10.36	2.1153	1	23143			2258	2048	1319	1340	1741	1741					-0.07932411523142946
DLEKAAAF	8	Unmodified	_DLEKAAAF_					0	0	0		ENSG00000124370|ENST00000244217|MCEE	ENSG00000124370|ENST00000244217|MCEE	ENSG00000124370|ENST00000244217|MCEE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	864.4461595588	1	864.44616	863.438883	1.1572	0.0010003	4.0001	0.0034579	5.1573	0.0044582	864.4495892038559	31.114	0.16894	31.109	31.06	31.229	-0.0050716	417	103	1.3715409	0.060829043	1.3700215	279.0644	0	12.3767395						440	8	3	NaN	NaN	NaN	0.6053	1	5440	5440		24.961	1.1106	1	78995			2259	2413	1320	1341	1742	1742					0.001701205977610698
DLELEVTLM	9	Unmodified	_DLELEVTLM_					0	0	0			REV__ENST00000607016.1_1_6:34255549-34255657:-|nuORF	REV__ENST00000607016.1_1_6:34255549-34255657:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.538739315	1	1062.53874	1061.53146	1.0902	0.0011584	-1.3497	-0.0014342	-0.25956	-0.00027579	1062.5360805847042	33.673	0.16888	33.673	33.576	33.745	0	111	85	1.5529068	0.04953873	1.5529068	315.04065	0	10.050018						137	8	2	NaN	NaN	NaN	0.31737	1	11180	11180		17.799	1.2148	1	9448.4	+		2260	12980	1321	1342	1743	1743					0.0031583754896473692
DLESDSWELFI	11	Unmodified	_DLESDSWELFI_					0	0	0			REV__ENST00000373840.8_1_9:123942493-123942817:-|nuORF	REV__ENST00000373840.8_1_9:123942493-123942817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3140827533	2	677.314083	1352.61361	1.0506	0.00071159	-1.9267	-0.001305	-0.87613	-0.00059341	677.8143134321951	36.976	0.21675	36.976	36.928	37.145	0	1119	61	0.9479278	0.036655188	0.9479278	383.54858	0	14.83136						249	10	4	NaN	NaN	NaN	0.76488	1	19573	19573		2.8895	0	1	22385	+		2261	11926	1322	1343	1744	1744					-0.04858968838379951
DLETIKMRL	9	Unmodified	_DLETIKMRL_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.5461197605333	3	373.54612	1117.61653	1.8746	0.00070024	-11.744	-0.0043869	-9.8694	-0.0036867	373.54188509972647	19.924	0.19238	19.924	19.876	20.069	0	1434	55	0.75435036	0.033370078	0.75435036	458.803	0	20.29599						296	9	3	NaN	NaN	NaN	0.42817	1	13587	13587		12.57	0	1	68287	+		2262	9671	1323	1344	1745	1745					0.06242627805431766
DLFDFITER	9	Unmodified	_DLFDFITER_					0	0	0		ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1	ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.28767103755	2	578.287671	1154.56079	1.3771	0.00079634	-1.7443	-0.0010087	-0.36721	-0.00021235	578.2865337966542	31.766	0.33788	31.766	31.67	32.008	0	1197	70	0.9001988	0.042287946	0.9001988	364.8679	0	17.140106						429	15	4	NaN	NaN	NaN	0.024118	1	14962	14962		66.481	21.843	1	131450			2263	3073;5771	1324	1345	1746	1746					-0.010308821105354582
DLFDFITER	9	Unmodified	_DLFDFITER_					0	0	0		ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1	ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.28767103755	2	578.287671	1154.56079	0.8224	0.00047558	-1.0654	-0.00061609	-0.24296	-0.0001405	578.2868922340301	31.741	0.31373	31.737	31.64	31.954	-0.0044155	1194	73	0.902037	0.044128895	0.9005176	365.61295	0	17.886292						462	14	4	NaN	NaN	NaN	0.015662	1	14468	14468		86.792	42.154	1	140520			2264	3073;5771	1324	1345	1747	1747					-0.010308821105354582
DLFEDGGIIRR	11	Unmodified	_DLFEDGGIIRR_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.84367607025	2	645.843676	1289.6728	1.9376	0.0012514	-1.6889	-0.0010908	0.24869	0.00016061	645.8424581325293	22.236	0.1447	22.236	22.212	22.356	0	1098	43	0.960755	0.025644839	0.960755	388.93057	0	10.3815						145	7	4	NaN	NaN	NaN	0.48738	1	18593	18593		15.822	5.4618	1	16407			2265	1135	1325	1346	1748	1748					0.039549719664591976
DLFEDGGIIRR	11	Unmodified	_DLFEDGGIIRR_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.89820953569995	3	430.89821	1289.6728	1.4056	0.00060568	-0.66244	-0.00028544	0.74318	0.00032023	430.89859863959066	22.236	0.096491	22.236	22.212	22.308	0	1425	34	0.7599118	0.020389438	0.7599118	461.4347	0	12.38092						79	5	3	NaN	NaN	NaN	0.3939	1	18594	18594		22.269	17.368	1	8058.7			2266	1135	1325	1346	1749	1749					0.039549719664591976
DLFEDGGIIRR	11	Unmodified	_DLFEDGGIIRR_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.84367607025	2	645.843676	1289.6728	1.5309	0.00098875	-1.0228	-0.00066057	0.50814	0.00032818	645.8429373737812	22.259	0.14458	22.246	22.222	22.366	-0.013731	1098	40	0.960755	0.023811758	0.9592356	388.93057	0	9.639435						145	7	3	NaN	NaN	NaN	0.076425	1	17767	17767		48.65	18.615	1	17872			2267	1135	1325	1346	1750	1750					0.039549719664591976
DLFEDGGIIRR	11	Unmodified						0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	430.89821	1289.6728	1.0355	0.00044619	-3.13	-0.0013487	-2.0945	-0.00090253	430.8970622772959	22.259	0.072344	22.246	22.246	22.318	-0.013731	1422	31	0.7617651	0.018532872	0.7602457	462.56012		11.253571	0.0049873	-0.0012529	0.00016698	NaN	22.269	75	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7560.7			2268	1135	1325	1346							0.039549719664591976
DLFGEMEVVCL	11	Unmodified	_DLFGEMEVVCL_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.7908746804502	2	627.790875	1253.5672	1.0809	0.00067856	-0.94044	-0.0005904	0.14043	8.8158E-05	627.7896057693946	24.623	0.096498	24.61	24.562	24.658	-0.012394	1137	70	0.9369253	0.04219669	0.93540585	379.3996	0	17.087189						141	5	3	NaN	NaN	NaN	0.73455	1	17101	17101		5.1889	0	1	11310		+	2269	209	1326	1347	1751	1751					-0.04944448265632673
DLFGEMEVVCL	11	Unmodified						0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.790875	1253.5672	1.3306	0.00083531	-1.3436	-0.00084347	-0.013004	-8.1638E-06	627.7913178399348	24.598	0.12062	24.598	24.574	24.695	0	1131	79	0.94059354	0.047692895	0.94059354	380.88504		19.312836	-0.0058203	-0.00022191	0.0025939	NaN	5.1889	192	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14471		+	2270	209	1326	1347							-0.04944448265632673
DLFHEPHFRF	10	Unmodified	_DLFHEPHFRF_					0	0	0			REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__nc|ENSG00000100197|P10635-2|CYP2D6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.8876448494	3	448.887645	1343.64111	1.3043	0.0005855	-7.848	-0.0035229	-6.5437	-0.0029374	448.88380262402416	21.464	0.072197	21.45	21.378	21.45	-0.014006	1425	58	0.7599118	0.035206795	0.75839233	461.23856	0	21.369202						101	4	2	NaN	NaN	NaN	0.72095	1	18603	18603		6.6174	0	1	9160.2	+		2271	8793	1327	1348	1752	1752					-0.016969759968333165
DLFSVEDEYAT	11	Unmodified	_DLFSVEDEYAT_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.7826154494	2	644.782615	1287.55068	1.3456	0.00086761	-5.3984	-0.0034808	-4.0528	-0.0026132	644.7791894395373	33.238	0.2172	33.238	33.19	33.407	0	1119	49	0.9479278	0.029330492	0.9479278	383.7446	0	11.873688						351	10	5	NaN	NaN	NaN	0.51407	1	18554	18554		17.97	1.1114	1	81140	+		2272	10613	1328	1349	1753	1753					-0.08159534626406639
DLFSVEDEYAT	11	Unmodified						0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	644.782615	1287.55068	1.3456	0.00086761	-5.3984	-0.0034808	-4.0528	-0.0026132	644.7791894395373	33.238	0.2172	33.238	33.19	33.407	0	1119	49	0.9479278	0.029330492	0.9479278	383.7446		11.873688	0.0018954	-0.00056903	-0.00015681	NaN	17.97	351	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81140	+		2273	10613	1328	1349							-0.08159534626406639
DLFYSFWER	9	Unmodified	_DLFYSFWER_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.7956632451501	2	631.795663	1261.57677	0.9993	0.00063135	-3.8055	-0.0024043	-2.8062	-0.0017729	632.2945431210209	31.186	0.24131	31.181	31.157	31.398	-0.0050716	1131	43	0.94059354	0.025675297	0.93907416	380.8587	0	10.39624						189	11	3	NaN	NaN	NaN	0.27507	1	17247	17247		20.513	1.1769	1	15586			2274	1422	1329	1350	1754	1754					-0.04355175873615735
DLFYSFWER	9	Unmodified						0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	631.795663	1261.57677	0.81992	0.00051802	-1.0312	-0.0006515	-0.21127	-0.00013348	632.297325901167	31.211	0.096525	31.211	31.163	31.259	0	1131	46	0.94059354	0.027507722	0.94059354	380.8587		11.138245	0.015138	0.0016764	0.00075972	NaN	20.513	112	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10121			2275	1422	1329	1350							-0.04355175873615735
DLFYYENYLIF	11	Unmodified	_DLFYYENYLIF_					0	0	0		tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.3582932917001	2	750.358293	1498.70203	1.026	0.00076983	-4.3935	-0.0032967	-3.3676	-0.0025269	750.354243555819	33.021	0.16896	33.021	32.973	33.142	0	999	67	1.0210962	0.040147424	1.0210962	412.74622	0	16.228333						252	8	4	NaN	NaN	NaN	0.6085	1	20578	20578		13.463	0.89334	1	29497			2276	13933	1330	1351	1755	1755					-0.02736928527906457
DLFYYENYLIF	11	Unmodified	_DLFYYENYLIF_					0	0	0		tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.3582932917001	2	750.358293	1498.70203	1.1698	0.00087778	-4.6718	-0.0035055	-3.502	-0.0026277	750.3550757225934	33.02	0.16874	33.018	32.969	33.138	-0.0024796	999	46	1.0210962	0.027377605	1.0195768	412.74622	0	11.066559						228	8	3	NaN	NaN	NaN	0.37016	1	19563	19563		23.118	8.6926	1	29928			2277	13933	1330	1351	1756	1756					-0.02736928527906457
DLGDFGYQHLF	11	Unmodified	_DLGDFGYQHLF_					0	0	0			REV__CON__Q95M17	REV__CON__Q95M17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.303852418	2	656.303852	1310.59315	0.82586	0.00054201	8.8787	0.0058271	9.7046	0.0063691	656.3095022643893	35.239	0.14484	35.239	35.191	35.336	-4.1962E-05	1098	40	0.960755	0.02381432	0.9592356	388.86472	0	9.638824						89	7	2	NaN	NaN	NaN	0.71564	1	18113	18113		6.4299	1.2411	1	7344.7	+	+	2278	8287	1331	1352	1757	1757					-0.04972094707522956
DLGTPHSLF	9	Unmodified	_DLGTPHSLF_					0	0	0			REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF	REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.75072442525004	2	493.750724	985.486896	1.2912	0.00063754	1.8851	0.00093076	3.1763	0.0015683	493.75213307253125	24.454	0.096596	24.441	24.417	24.513	-0.012749	1317	46	0.8265074	0.027689636	0.82498795	335.67682	0	11.245819						68	5	2	NaN	NaN	NaN	0.55027	1	7886	7886		7.5404	0	1	4721.2	+		2279	12506	1332	1353	1758	1758					-0.00642805482186759
DLHLVEPTE	9	Unmodified	_DLHLVEPTE_					0	0	0			REV__ENSG00000186198|ENST00000334287|SLC51B	REV__ENSG00000186198|ENST00000334287|SLC51B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7665714547	2	526.766571	1051.51859	1.2146	0.00063981	-8.3323	-0.0043892	-7.1177	-0.0037493	526.761997212339	20.718	0.2891	20.704	20.584	20.873	-0.014086	1245	97	0.87076044	0.0589723	0.869241	353.34393	0	23.930206						514	13	4	NaN	NaN	NaN	0.12945	1	10468	10468		31.561	9.4347	1	233170	+		2280	10994	1333	1354	1759	1759					-0.005108575189069597
DLHLVEPTE	9	Unmodified						0	0	0			REV__ENSG00000186198|ENST00000334287|SLC51B	REV__ENSG00000186198|ENST00000334287|SLC51B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.766571	1051.51859	1.2391	0.00065269	-11.477	-0.0060458	-10.238	-0.0053931	526.7602670283985	20.838	0.072243	20.838	20.766	20.838	0	1251	31	0.8670771	0.018418849	0.8670771	351.84927		7.4741516	0.067103	-0.0029713	-0.001082	NaN	31.561	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6830.2	+		2281	10994	1333	1354							-0.005108575189069597
DLHLVEPTE	9	Unmodified						0	0	0			REV__ENSG00000186198|ENST00000334287|SLC51B	REV__ENSG00000186198|ENST00000334287|SLC51B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.766571	1051.51859	1.2146	0.00063981	-8.3323	-0.0043892	-7.1177	-0.0037493	526.761997212339	20.718	0.2891	20.704	20.584	20.873	-0.014086	1245	97	0.87076044	0.0589723	0.869241	353.34393		23.930206	-0.067103	0.00034197	0.001082	NaN	31.561	514	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233170	+		2282	10994	1333	1354							-0.005108575189069597
DLHSSVNHP	9	Unmodified	_DLHSSVNHP_					0	0	0			REV__nc|ENSG00000100644|Q16665-2|HIF1A	REV__nc|ENSG00000100644|Q16665-2|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.24105519595	2	503.241055	1004.46756	0.93395	0.00047	-8.5444	-0.0042999	-7.6104	-0.0038299	503.2366278010518	27.373	0.1689	27.363	27.339	27.508	-0.010126	1299	46	0.8375814	0.027677655	0.83606195	340.08597	0	11.238037						198	8	3	NaN	NaN	NaN	0.44082	1	8580	8580		12.049	0.87837	1	29124	+		2283	8826	1334	1355	1760	1760					-0.03449761773094906
DLIRKTDRSYK	11	Unmodified	_DLIRKTDRSYK_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.8911575791	2	697.891158	1393.76776	1.4779	0.0010314	-1.9864	-0.0013863	-0.5085	-0.00035488	697.8901353653432	22.139	0.048277	22.139	22.115	22.163	0	999	28	1.0210962	0.016428351	1.0210962	413.0304	0	6.6452026						42	3	2	NaN	NaN	NaN	0.77613	1	20010	20010		0.9188	0	1	3740			2284	3098	1335	1356	1761	1761					0.08662905437631707
DLISCPLGR	9	Unmodified	_DLISCPLGR_					0	0	0			REV__ENST00000407418.7_1_22:39261643-39261862:-|nuORF	REV__ENST00000407418.7_1_22:39261643-39261862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.26040204205	2	487.260402	972.506251	1.2215	0.00059521	-11.056	-0.0053869	-9.834	-0.0047917	487.256096389355	12.198	0.23992	12.189	12.045	12.285	-0.0088415	1350	46	0.80618626	0.027728617	0.8046668	327.48383	0	11.263733						180	11	2	NaN	NaN	NaN	0.16171	1	7527	7527		27.789	0	1	15122	+		2285	12051	1336	1357	1762	1762					0.018898275370588635
DLKRSVGK	8	Unmodified	_DLKRSVGK_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5417912785002	1	902.541791	901.534515	1.009	0.00091062	2.0859	0.0018826	3.0949	0.0027932	902.5445236305578	31.452	0.096523	31.452	31.452	31.549	0	333	49	1.4215236	0.028522015	1.4215236	289.04257	0	5.799469						75	5	2	NaN	NaN	NaN	0.77891	1	6113	6113		12.049	1.4437	1	6737.1	+		2286	10233	1337	1358	1763	1763					0.07980893508670306
DLKRSVGK	8	Unmodified						0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	902.541791	901.534515	1.009	0.00091062	2.0859	0.0018826	3.0949	0.0027932	902.5445236305578	31.452	0.096523	31.452	31.452	31.549	0	333	49	1.4215236	0.028522015	1.4215236	289.04257		5.799469	0.12373	-0.00097171	-0.0072574	NaN	12.049	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6737.1	+		2287	10233	1337	1358							0.07980893508670306
DLKRSVGK	8	Unmodified						0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	902.541791	901.534515	1.4179	0.0012797	3.649	0.0032934	5.0669	0.004573	902.5447811736473	31.21	0.048275	31.205	31.205	31.253	-0.0050716	306	64	1.4375578	0.03740132	1.4360384	292.30286		7.6049194	-0.12373	0.00043905	0.0072574	NaN	12.049	83	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10901	+		2288	10233	1337	1358							0.07980893508670306
DLKSIHHF	8	Unmodified	_DLKSIHHF_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5261412143002	1	996.526141	995.518865	2.4445	0.002436	-1.5063	-0.0015011	0.93819	0.00093493	996.5233184777684	26.336	0.14482	26.336	26.288	26.432	0	240	112	1.4766881	0.06572986	1.4766881	299.83282	0	13.346039						387	7	4	NaN	NaN	NaN	0.84692	1	8411	8411		1.4396	0	1	73872	+		2289	8907	1338	1359	1764	1764					0.020926069916185952
DLKSIHHF	8	Unmodified						0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.526141	995.518865	2.4445	0.002436	-1.5063	-0.0015011	0.93819	0.00093493	996.5233184777684	26.336	0.14482	26.336	26.288	26.432	0	240	112	1.4766881	0.06572986	1.4766881	299.83282		13.346039	0.0057035	-0.00059532	-0.00012852	NaN	1.4396	387	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73872	+		2290	8907	1338	1359							0.020926069916185952
DLKSIHHF	8	Unmodified						0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.526141	995.518865	1.9219	0.0019153	0.29981	0.00029877	2.2217	0.002214	996.5246785113385	26.336	0.1689	26.324	26.276	26.445	-0.011137	237	103	1.4784646	0.06039071	1.4769452	300.1935		12.261993	-0.0057035	0.0012046	0.00012852	NaN	1.4396	370	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75610	+		2291	8907	1338	1359							0.020926069916185952
DLLELMMLQ	9	Unmodified	_DLLELMMLQ_					0	0	0		nc|ENSG00000224383|P0C7W0-3|PRR29;nc|ENSG00000224383|P0C7W0-4|PRR29;ENSG00000224383|ENST00000412177|PRR29;nc|ENSG00000224383|P0C7W0-2|PRR29	nc|ENSG00000224383|P0C7W0-3|PRR29	nc|ENSG00000224383|P0C7W0-3|PRR29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2852281965501	2	553.285228	1104.5559	1.0667	0.00059019	-7.3929	-0.0040904	-6.3262	-0.0035002	553.2813538937845	21.175	0.19274	21.175	21.103	21.296	0	1233	58	0.87812483	0.034975052	0.87812483	356.11102	0	14.183624						198	9	3	NaN	NaN	NaN	0.16171	1	13037	13037		27.789	0.4926	1	22181			2292	6020	1339	1360	1765	1765					0.007807744308593101
DLLELMMLQ	9	Unmodified	_DLLELMMLQ_					0	0	0		nc|ENSG00000224383|P0C7W0-3|PRR29;nc|ENSG00000224383|P0C7W0-4|PRR29;ENSG00000224383|ENST00000412177|PRR29;nc|ENSG00000224383|P0C7W0-2|PRR29	nc|ENSG00000224383|P0C7W0-3|PRR29	nc|ENSG00000224383|P0C7W0-3|PRR29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2852281965501	2	553.285228	1104.5559	1.159	0.00064126	-7.2413	-0.0040065	-6.0823	-0.0033652	553.2806544120666	21.176	0.14449	21.162	21.138	21.282	-0.014004	1230	43	0.8799654	0.02576971	0.878446	356.85745	0	10.450531						113	7	2	NaN	NaN	NaN	0.055351	1	12693	12693		44.638	3.6816	1	17509			2293	6020	1339	1360	1766	1766					0.007807744308593101
DLLGTWVF	8	Unmodified	_DLLGTWVF_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4981951293001	1	950.498195	949.490919	0.92434	0.00087859	-0.38017	-0.00036135	0.54417	0.00051723	950.4973780124748	38.492	0.2403	38.492	38.42	38.66	0	255	100	1.4678029	0.058686137	1.4678029	298.22595	0	11.923767						517	11	4	NaN	NaN	NaN	0.12449	1	7076	7076		59.445	23.409	1	85582			2294	1737	1340	1361	1767	1767					0.014152840115229992
DLLGTWVF	8	Unmodified	_DLLGTWVF_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4981951293001	1	950.498195	949.490919	1.609	0.0015293	0.046974	4.4648E-05	1.656	0.001574	950.4980757701285	38.465	0.3125	38.469	38.421	38.734	0.0040245	252	91	1.4695803	0.05334258	1.4680609	298.5871	0	10.838043						540	14	3	NaN	NaN	NaN	0.23746	1	6946	6946		47.04	10.454	1	87157			2295	1737	1340	1361	1768	1768					0.014152840115229992
DLLLLKDHPF	10	Unmodified	_DLLLLKDHPF_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.23252957333335	3	404.23253	1209.67576	1.4882	0.00060157	-2.524	-0.0010203	-1.0358	-0.00041871	404.23146088323534	25.105	0.26542	25.105	25.057	25.322	0	1431	55	0.75620437	0.03336644	0.75620437	459.50464	0	20.274963						286	12	4	NaN	NaN	NaN	0.15566	1	16725	16725		39.34	3.1202	1	99871	+		2296	10477	1341	1362	1769	1769					0.07930847091279247
DLLLLKDHPF	10	Unmodified	_DLLLLKDHPF_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.23252957333335	3	404.23253	1209.67576	1.5922	0.00064362	-2.5829	-0.0010441	-0.99071	-0.00040048	404.2311534501459	25.129	0.14474	25.117	25.069	25.214	-0.012011	1428	52	0.7580582	0.03151101	0.75653875	460.63107	0	19.147552						294	7	5	NaN	NaN	NaN	0.10301	1	16051	16051		45.55	3.4887	1	98662	+		2297	10477	1341	1362	1770	1770					0.07930847091279247
DLLLLKDHPF	10	Unmodified						0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	404.23253	1209.67576	1.4882	0.00060157	-2.524	-0.0010203	-1.0358	-0.00041871	404.23146088323534	25.105	0.26542	25.105	25.057	25.322	0	1431	55	0.75620437	0.03336644	0.75620437	459.50464		20.274963	-0.0059434	2.7101E-05	-0.00016718	NaN	45.55	286	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99871	+		2298	10477	1341	1362							0.07930847091279247
DLLLLKDHPF	10	Unmodified						0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	404.23253	1209.67576	1.5922	0.00064362	-2.5829	-0.0010441	-0.99071	-0.00040048	404.2311534501459	25.129	0.14474	25.117	25.069	25.214	-0.012011	1428	52	0.7580582	0.03151101	0.75653875	460.63107		19.147552	0.0059434	-4.4319E-05	0.00016718	NaN	45.55	294	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98662	+		2299	10477	1341	1362							0.07930847091279247
DLLRYFSWAE	10	Unmodified	_DLLRYFSWAE_					0	0	0		ENSG00000120685|ENST00000352251|PROSER1;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENST00000602534.1_1_13:39603416-39611379:-|nuORF	ENSG00000120685|ENST00000352251|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.8837889363	3	433.883789	1298.62954	1.1233	0.00048738	-0.67951	-0.00029483	0.44378	0.00019255	433.8830316656863	13.613	0.14387	13.603	13.579	13.723	-0.010098	1458	37	0.7395112	0.022268474	0.73799175	449.01425	0	13.520874						94	7	2	NaN	NaN	NaN	0.76548	1	17920	17920		1.5256	0.53789	1	8695			2300	2267	1342	1363	1771	1771					-0.007832178108174048
DLLSAVGLL	9	Unmodified	_DLLSAVGLL_					0	0	0			REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.8217	0.0016405	1.0282	0.00092589	2.8498	0.0025664	900.5409646537385	30.994	0.26553	30.994	30.946	31.211	0	333	250	1.4215236	0.14832902	1.4215236	289.05225	0	30.161194						1410	12	5	NaN	NaN	NaN	0.025843	1	6076	6076		64.55	11.792	1	1480600	+		2301	12960	1343	1364	1772	1772					0.07899839700041866
DLLSAVGLL	9	Unmodified						0	0	0			REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	1.8217	0.0016405	1.0282	0.00092589	2.8498	0.0025664	900.5409646537385	30.994	0.26553	30.994	30.946	31.211	0	333	250	1.4215236	0.14832902	1.4215236	289.05225		30.161194	0.0030628	0.00047402	-0.00013145	NaN	64.55	1410	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480600	+		2302	12960	1343	1364							0.07899839700041866
DLLSAVGLL	9	Unmodified						0	0	0			REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	REV__ENST00000601237.5_1_19:53122096-53138333:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.54006	899.532783	2.4765	0.0022302	0.16681	0.00015022	2.6434	0.0023804	900.5400257283521	30.993	0.26548	30.988	30.915	31.181	-0.0050716	330	325	1.4233059	0.19322312	1.4217864	289.41467		39.289948	-0.0030628	-0.00030165	0.00013145	NaN	64.55	1559	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1889500	+		2303	12960	1343	1364							0.07899839700041866
DLLTEVGVSGQ	11	Unmodified	_DLLTEVGVSGQ_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.19603261670005	3	373.196033	1116.56627	1.5005	0.00055998	-8.6594	-0.0032316	-7.1589	-0.0026717	373.19269114703206	12.076	0.14408	12.076	12.028	12.172	0	1530	43	0.6949163	0.026044786	0.6949163	422.65945	0	15.840881						134	7	3	NaN	NaN	NaN	0.4078	1	13532	13532		15.786	0	1	11927			2304	3276	1344	1365	1773	1773					0.012647966813119638
DLNPCEHQSVC	11	Unmodified	_DLNPCEHQSVC_					0	0	0		CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.7553548414	2	622.755355	1243.49616	1.7007	0.0010591	-0.55862	-0.00034789	1.142	0.00071121	622.7547553418087	22.838	0.096521	22.838	22.814	22.911	0	1167	46	0.91857195	0.027540386	0.91857195	372.0004	0	11.153198						126	5	4	NaN	NaN	NaN	0.66717	1	17606	17606		9.6116	1.3668	1	12193			2305	92	1345	1366	1774	1774					-0.11585148250469501
DLNPCEHQSVC	11	Unmodified						0	0	0		CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.755355	1243.49616	1.1676	0.00072711	-3.9379	-0.0024523	-2.7703	-0.0017252	622.7532809066289	23.007	0.16864	22.993	22.921	23.089	-0.01354	1170	49	0.91673553	0.029384315	0.9152161	371.2567		11.899994	0.077277	-0.0029926	-0.0016779	NaN	9.6116	101	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9735.9			2306	92	1345	1366							-0.11585148250469501
DLNQIVLL	8	Unmodified	_DLNQIVLL_					0	0	0			REV__ENSG00000256797|ENST00000535540|KLRF2	REV__ENSG00000256797|ENST00000535540|KLRF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.5509589813001	1	927.550959	926.543683	0.94161	0.00087339	-1.3006	-0.0012064	-0.35903	-0.00033302	927.5492977197797	29.062	0.096523	29.055	29.031	29.127	-0.0077209	300	49	1.4411188	0.028488636	1.4395994	292.90802	0	5.790344						79	5	2	NaN	NaN	NaN	0.77891	1	6399	6399		12.049	1.6885	1	6976.8	+		2307	11382	1346	1367	1775	1775					0.07747242074333371
DLNVSPPEL	9	Unmodified	_DLNVSPPEL_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5044027192001	1	983.504403	982.497126	1.7023	0.0016743	-0.26842	-0.000264	1.4339	0.0014103	983.5040222111145	32.08	0.21717	32.08	32.008	32.225	0	231	121	1.4820169	0.07108569	1.4820169	300.96927	0	14.436127						583	10	3	NaN	NaN	NaN	0.032826	1	7963	7963		55.413	13.953	1	105330			2308	4064	1347	1368	1776	1776					0.005177574523941075
DLNVSPPEL	9	Unmodified	_DLNVSPPEL_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5044027192001	1	983.504403	982.497126	1.2436	0.0012231	-0.17747	-0.00017454	1.0661	0.0010485	983.5046180993431	32.055	0.28956	32.051	31.979	32.268	-0.0037613	228	121	1.4837929	0.07108569	1.4822735	301.32993	0	14.436127						629	13	3	NaN	NaN	NaN	0.036546	1	7796	7796		52.624	17.328	1	110820			2309	4064	1347	1368	1777	1777					0.005177574523941075
DLPAADGA	8	Unmodified	_DLPAADGA_					0	0	0		ATXN7L2|p.E45K|1|0.44|ENSG00000162650|chr1:109486062-109486062|G/A|missense_variant;nc|ENSG00000162650|Q5T6C5|ATXN7L2;ENSG00000162650|ENST00000683729|ATXN7L2	ATXN7L2|p.E45K|1|0.44|ENSG00000162650|chr1:109486062-109486062|G/A|missense_variant	ATXN7L2|p.E45K|1|0.44|ENSG00000162650|chr1:109486062-109486062|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3413601363	1	729.34136	728.334084	1.3653	0.00099579	7.2221	0.0052674	8.5874	0.0062632	729.3461072214653	37.022	0.1202	37.024	36.976	37.096	0.0022507	606	67	1.2585332	0.039578915	1.2570138	256.81436	0	8.076416						100	6	2	NaN	NaN	NaN	0.82797	1	3658	3658		5.4659	2.3125	1	6205.9			2310	56	1348	1369	1778	1778					-0.040950008788172454
DLQNDEVAF	9	Unmodified	_DLQNDEVAF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000443616.1_1_1:119669641-119669854:-|nuORF;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.4738308723	1	1050.47383	1049.46655	2.5121	0.0026389	-2.1399	-0.0022479	0.37225	0.00039104	1050.4708444200148	25.539	0.096443	25.539	25.491	25.588	0	180	55	1.5121819	0.03191054	1.5121819	306.82397	0	6.474701						103	5	2	NaN	NaN	NaN	0.12104	1	10595	10595		32.778	12.223	1	9524.8			2311	3517	1349	1370	1779	1779					-0.05620020932656189
DLQNDEVAF	9	Unmodified						0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000443616.1_1_1:119669641-119669854:-|nuORF;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1050.47383	1049.46655	2.3139	0.0024307	-1.1759	-0.0012353	1.138	0.0011954	1050.4736045927934	25.539	0.096529	25.528	25.503	25.6	-0.0116	177	46	1.5139546	0.026587963	1.5124352	307.18365		5.3947144	-0.0059377	0.00042139	0.00012664	NaN	32.778	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7224.1			2312	3517	1349	1370							-0.05620020932656189
DLRPFLVLL	9	Unmodified	_DLRPFLVLL_					0	0	0			REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF	REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	362.5620985840667	3	362.562099	1084.66447	1.7984	0.00065202	-1.2899	-0.00046765	0.50852	0.00018437	362.56214797959274	19.9	0.096243	19.9	19.876	19.972	0	1419	37	0.76361835	0.022237062	0.76361835	464.61136	0	13.529755						69	5	2	NaN	NaN	NaN	0.63796	1	12185	12185		3.9281	0.66711	1	7991.3	+		2313	8517	1350	1371	1780	1780					0.12552069787784603
DLRPFLVLL	9	Unmodified						0	0	0			REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF	REV__ENST00000463793.1_1_1:234546169-234556549:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	362.562099	1084.66447	1.7984	0.00065202	-1.2899	-0.00046765	0.50852	0.00018437	362.56214797959274	19.9	0.096243	19.9	19.876	19.972	0	1419	37	0.76361835	0.022237062	0.76361835	464.61136		13.529755	-0.076847	0.00095696	0.00075972	NaN	3.9281	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7991.3	+		2314	8517	1350	1371							0.12552069787784603
DLRSRLCRI	9	Unmodified	_DLRSRLCRI_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.3243992823501	2	566.324399	1130.63425	1.9217	0.0010883	-3.2775	-0.0018561	-1.3558	-0.00076784	566.3232442794393	14.261	0.072079	14.261	14.213	14.285	0	1194	43	0.902037	0.025727928	0.902037	365.70428	0	10.430634						87	4	3	NaN	NaN	NaN	0.47587	1	14115	14115		10.605	0	1	5713.1			2315	1455	1351	1372	1781	1781					0.07415387850960542
DLSIQPPSA	9	Unmodified	_DLSIQPPSA_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4781879687	1	927.478188	926.470912	2.5135	0.0023312	-2.2701	-0.0021055	0.24338	0.00022573	927.4755016252773	18.652	0.095949	18.652	18.604	18.7	0	348	91	1.412609	0.0535357	1.412609	287.1137	0	10.881165						229	5	2	NaN	NaN	NaN	0.41766	1	6517	6517		13.003	0	1	19342			2316	5421	1352	1373	1782	1782					0.0047348828089752715
DLSSTSSA	8	Unmodified	_DLSSTSSA_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3417540668001	1	767.341754	766.334478	1.1402	0.00087492	2.4815	0.0019042	3.6217	0.0027791	767.3431717595638	41.256	0.14456	41.263	41.143	41.287	0.0074921	663	40	1.2243022	0.023443818	1.2227827	249.6003	0	4.7795258						117	7	2	NaN	NaN	NaN	0.84692	1	4226	4226		1.4396	0	1	11695	+		2317	10337	1353	1374	1783	1783					-0.05803625949602065
DLSYLGPFQ	9	Unmodified	_DLSYLGPFQ_					0	0	0			REV__ENST00000591360.1_1_18:56203606-56203801:+|nuORF	REV__ENST00000591360.1_1_18:56203606-56203801:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5094880971	1	1039.50949	1038.50221	0.9117	0.00094772	2.6124	0.0027156	3.5241	0.0036634	1040.5154667722204	31.646	0.096558	31.646	31.646	31.742	0	162	85	1.5228153	0.04962802	1.5228153	309.02383	0	10.070984						123	5	2	NaN	NaN	NaN	0.23112	1	10134	10134		23.334	2.8858	1	13906	+		2318	12919	1354	1375	1784	1784					-0.015499386849796792
DLSYLGPFQ	9	Unmodified						0	0	0			REV__ENST00000591360.1_1_18:56203606-56203801:+|nuORF	REV__ENST00000591360.1_1_18:56203606-56203801:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1039.50949	1038.50221	0.9117	0.00094772	2.6124	0.0027156	3.5241	0.0036634	1040.5154667722204	31.646	0.096558	31.646	31.646	31.742	0	162	85	1.5228153	0.04962802	1.5228153	309.02383		10.070984	0.0027299	-0.00022396	0.00075972	NaN	23.334	123	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13906	+		2319	12919	1354	1375							-0.015499386849796792
DLTAEGGIWYY	11	Unmodified	_DLTAEGGIWYY_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.86791597143343	3	429.867916	1286.58192	1.3986	0.00060119	6.553	0.0028169	7.9516	0.0034181	429.87052627431444	13.276	0.14413	13.276	13.228	13.373	0	1494	67	0.7172283	0.04086536	0.7172283	435.5274	0	24.814941						248	7	3	NaN	NaN	NaN	0.688	1	18539	18539		3.5945	0	1	32615	+		2320	10773	1355	1376	1785	1785					-0.049909168016256444
DLTGHSFVL	9	Unmodified	_DLTGHSFVL_					0	0	0		MAGEA10|p.P196L|1|0.74|ENSG00000124260|chrX:152135034-152135034|G/A|missense_variant	MAGEA10|p.P196L|1|0.74|ENSG00000124260|chrX:152135034-152135034|G/A|missense_variant	MAGEA10|p.P196L|1|0.74|ENSG00000124260|chrX:152135034-152135034|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5098224481002	1	988.509822	987.502546	1.7806	0.0017601	-11.289	-0.01116	-9.5087	-0.0093994	988.4980746788882	36.254	0.12051	36.254	36.205	36.326	0	279	52	1.4535767	0.030245066	1.4535767	295.17294	0	6.141754						133	6	2	NaN	NaN	NaN	0.12945	1	8118	8118		31.561	4.2648	1	12363			2321	7870	1356	1377	1786	1786					0.00829481034861601
DLTMGYRVH	9	Unmodified	_DLTMGYRVH_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2687583904001	2	546.268758	1090.52296	1.3786	0.00075308	-7.8123	-0.0042676	-6.4337	-0.0035145	546.2652788502218	27.736	0.12066	27.736	27.712	27.833	0	1239	94	0.87444305	0.057120144	0.87444305	354.67416	0	23.167938						117	6	2	NaN	NaN	NaN	0.59509	1	12421	12421		5.6942	0.2283	1	10570	+		2322	11302	1357	1378	1787	1787					-0.01867671576974317
DLTMGYRVH	9	Unmodified						0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.268758	1090.52296	1.3786	0.00075308	-7.8123	-0.0042676	-6.4337	-0.0035145	546.2652788502218	27.736	0.12066	27.736	27.712	27.833	0	1239	94	0.87444305	0.057120144	0.87444305	354.67416		23.167938	0	0	0	NaN	5.6942	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10570	+		2323	11302	1357	1378							-0.01867671576974317
DLTPAHGSVPN	11	Unmodified	_DLTPAHGSVPN_					0	0	0		nc|ENSG00000159708|Q1X8D7-3|LRRC36;nc|ENSG00000159708|Q1X8D7-2|LRRC36;ENSG00000159708|ENST00000329956|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2750949785501	2	554.275095	1106.53564	1.4381	0.0007971	2.5066	0.0013893	3.9447	0.0021864	554.2764689902345	13.781	0.11982	13.77	13.723	13.842	-0.010672	1254	52	0.8652351	0.03132391	0.86371565	350.876	0	12.702698						119	6	3	NaN	NaN	NaN	0.688	1	12761	12761		8.2448	1.3816	1	8708.3			2324	4036	1358	1379	1788	1788					-0.013369369130941777
DLWALGWQ	8	Unmodified	_DLWALGWQ_					0	0	0			REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.4886930755001	1	988.488693	987.481417	1.3413	0.0013258	-1.3246	-0.0013094	0.016659	1.6467E-05	988.488186506646	31.646	0.12069	31.646	31.597	31.718	0	291	49	1.446459	0.028476596	1.446459	293.72763	0	5.782654						127	6	2	NaN	NaN	NaN	0.54545	1	8116	8116		28.667	5.3321	1	13088	+		2325	11130	1359	1380	1789	1789					-0.012824842739973974
DLYDAGVKR	9	Unmodified	_DLYDAGVKR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7747308378	2	518.774731	1035.53491	1.235	0.0006407	-2.1647	-0.001123	-0.92968	-0.00048229	518.7746275268867	14.788	0.14414	14.776	14.752	14.896	-0.011738	1278	40	0.85049206	0.023969114	0.8489726	345.18808	0	9.728302						97	7	2	NaN	NaN	NaN	0.089764	1	9806	9806		37.302	0.71589	1	7960.4			2326	5275	1360	1381	1790	1790					0.018562684378366612
DLYIEECEKE	10	Unmodified	_DLYIEECEKE_					0	0	0		ENST00000470359.2_1_13:37621536-37625627:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000470359.2_1_13:37621536-37625627:-|nuORF	ENST00000470359.2_1_13:37621536-37625627:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.77901851545	2	635.779019	1269.54348	0.69256	0.00044032	-7.0403	-0.004476	-6.3477	-0.0040357	636.2749230396029	35.241	0.096527	35.241	35.192	35.289	0	1155	55	0.92591566	0.03303951	0.92591566	374.88998	0	13.377258						146	5	3	NaN	NaN	NaN	0.77101	1	18219	18219		1.5054	1.3129	1	12772			2327	1387	1361	1382	1791	1791					-0.08050590498487509
DLYTVLGLL	9	Unmodified	_DLYTVLGLL_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5819247587	1	1006.58192	1005.57465	0.88937	0.00089523	-0.12732	-0.00012816	0.76205	0.00076707	1006.5817865230979	31.717	0.21723	31.712	31.688	31.906	-0.0044155	174	121	1.5157272	0.07085967	1.5142077	307.71744	0	14.385681						408	10	3	NaN	NaN	NaN	0.030391	1	8653	8653		58.599	8.5666	1	81048	+		2328	8882	1362	1383	1792	1792					0.0720839538855671
DLYTVLGLL	9	Unmodified						0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1006.58192	1005.57465	1.237	0.0012451	-0.74142	-0.0007463	0.49557	0.00049883	1006.5814602320893	31.742	0.14483	31.742	31.694	31.839	0	174	109	1.5157272	0.06377375	1.5157272	307.71744		12.947113	0.014822	-0.00035157	0.00075972	NaN	58.599	289	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67748	+		2329	8882	1362	1383							0.0720839538855671
DLYTVLGLL	9	Unmodified						0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1006.58192	1005.57465	0.88937	0.00089523	-0.12732	-0.00012816	0.76205	0.00076707	1006.5817865230979	31.717	0.21723	31.712	31.688	31.906	-0.0044155	174	121	1.5157272	0.07085967	1.5142077	307.71744		14.385681	-0.014822	0.00026657	-0.00075972	NaN	58.599	408	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81048	+		2330	8882	1362	1383							0.0720839538855671
DMFSGEEF	8	Unmodified	_DMFSGEEF_					0	0	0		ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.3607749494001	1	961.360775	960.353498	1.4785	0.0014214	-0.80255	-0.00077154	0.67594	0.00064982	961.3604932999405	24.864	0.19306	24.864	24.84	25.033	0	348	61	1.412609	0.035667658	1.412609	286.96533	0	7.2457275						319	9	4	NaN	NaN	NaN	0.62311	1	7338	7338		23.85	0	1	39838			2331	1947	1363	1384	1793	1793					-0.12826412650201746
DMFSGEEF	8	Unmodified						0	0	0		ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	961.360775	960.353498	1.4619	0.0014054	0.40197	0.00038644	1.8639	0.0017918	961.3605628076888	24.864	0.1689	24.851	24.827	24.996	-0.012392	345	58	1.4143922	0.0338825	1.4128729	287.3276		6.883087	-0.0062941	0.00062491	0.00013193	NaN	23.85	285	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36314			2332	1947	1363	1384							-0.12826412650201746
DMGDVEVI	8	Unmodified	_DMGDVEVI_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.3971604557001	1	877.39716	876.389884	1.9834	0.0017403	2.4983	0.002192	4.4817	0.0039322	877.3977530848135	25.636	0.096462	25.624	25.576	25.672	-0.0116	432	43	1.3625998	0.02504456	1.3610804	277.18094	0	5.0946045						107	5	3	NaN	NaN	NaN	0.62311	1	5618	5618		23.85	4.5657	1	7671.9	+		2333	9005	1364	1385	1794	1794					-0.0532553575349084
DMGDVEVI	8	Unmodified						0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	877.39716	876.389884	1.9834	0.0017403	2.4983	0.002192	4.4817	0.0039322	877.3977530848135	25.636	0.096462	25.624	25.576	25.672	-0.0116	432	43	1.3625998	0.02504456	1.3610804	277.18094		5.0946045	-0.0059214	-0.00079452	0.0010292	NaN	23.85	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7671.9	+		2334	9005	1364	1385							-0.0532553575349084
DMHTEVTTL	9	Unmodified	_DMHTEVTTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7447817676001	2	523.744782	1045.47501	1.7459	0.00091438	-2.1923	-0.0011482	-0.44643	-0.00023382	523.74372186867	20.213	0.21633	20.213	20.165	20.381	0	1269	97	0.8560222	0.0589723	0.8560222	347.38925	0	23.932007						669	10	5	NaN	NaN	NaN	0.023074	1	10429	10429		68.108	23.806	1	261710			2335	7960	1365	1386	1795	1795					-0.04590790287670643
DMHTEVTTL	9	Unmodified	_DMHTEVTTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.4822870686	1	1046.48229	1045.47501	1.9904	0.0020829	-0.91934	-0.00096207	1.0711	0.0011209	1046.4829901859339	20.213	0.048065	20.213	20.213	20.261	0	210	40	1.4944444	0.02306974	1.4944444	303.24005	0	4.6810913						50	3	2	NaN	NaN	NaN	0.10956	1	10431	10431		34.439	19.263	1	3680.9			2336	7960	1365	1386	1796	1796					-0.04590790287670643
DMHTEVTTL	9	Unmodified	_DMHTEVTTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7447817676001	2	523.744782	1045.47501	1.8034	0.00094454	-0.50136	-0.00026258	1.3021	0.00068195	523.7447002855059	20.237	0.19255	20.222	20.174	20.367	-0.014143	1269	100	0.8560222	0.060818434	0.85450274	347.38922	0	24.681213						637	9	5	NaN	NaN	NaN	0.030391	1	10220	10220		58.599	24.16	1	246480			2337	7960	1365	1386	1797	1797					-0.04590790287670643
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(65)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7422390786501	2	531.742239	1061.46993	2.4676	0.0013121	-2.1969	-0.0011682	0.27075	0.00014397	531.7412636191343	17.573	0.3116	17.573	17.525	17.837	0	1281	70	0.84864825	0.042416096	0.84864825	344.3293	0	17.209839						682	14	5	NaN	NaN	NaN	0.025843	1	11161	11161		64.55	34.952	1	233340			2338	7960	1365	1387	1798	1798		643			-0.05835094150302211
DMHTEVTTL	9	Oxidation (M)	_DM(Oxidation (M))HTEVTTL_		DM(1)HTEVTTL		DM(81)HTEVTTL	0	0	1		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7422390786501	2	531.742239	1061.46993	1.6533	0.00087914	-0.53167	-0.00028271	1.1217	0.00059643	531.7423175712042	17.594	0.23973	17.58	17.532	17.772	-0.013567	1281	73	0.84864825	0.044267476	0.8471288	344.32928	0	17.960999						666	11	5	NaN	NaN	NaN	0.014046	1	10913	10913		80.639	30.806	1	236830			2339	7960	1365	1387	1799	1799		643			-0.05835094150302211
DMIKEFISM	9	Unmodified	_DMIKEFISM_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;ENST00000496420.5_1_7:92131189-92135604:-|nuORF;nc|ENSG00000127980|O43933-2|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.26957813235	2	557.269578	1112.5246	1.1667	0.00065019	-0.21247	-0.0001184	0.95428	0.00053179	557.2699508927645	29.425	0.14486	29.425	29.377	29.522	0	1191	55	0.90387505	0.033093095	0.90387505	366.52127	0	13.4192505						188	7	3	NaN	NaN	NaN	0.44082	1	13369	13369		12.049	0	1	21158			2340	2552	1366	1388	1800	1800					-0.02715798603253461
DMIKEFISM	9	Unmodified	_DMIKEFISM_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;ENST00000496420.5_1_7:92131189-92135604:-|nuORF;nc|ENSG00000127980|O43933-2|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.26957813235	2	557.269578	1112.5246	1.0666	0.00059436	-2.2354	-0.0012457	-1.1689	-0.00065139	557.2692321591455	29.424	0.12066	29.417	29.368	29.489	-0.0077209	1188	58	0.90571284	0.034929693	0.9041934	367.2665	0	14.164001						216	6	4	NaN	NaN	NaN	0.27507	1	12990	12990		20.513	10.767	1	21325			2341	2552	1366	1388	1801	1801					-0.02715798603253461
DMLRGHVGRQM	11	Unmodified	_DMLRGHVGRQM_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3240733188501	2	650.324073	1298.63359	1.352	0.00087923	-6.0785	-0.003953	-4.7265	-0.0030738	650.3217192218202	25.033	0.096542	25.021	24.972	25.069	-0.012011	1101	49	0.95892316	0.029314697	0.9574037	388.1606	0	11.866241						129	5	3	NaN	NaN	NaN	0.7072	1	17919	17919		6.9844	2.2553	1	11927	+		2342	10327	1367	1389	1802	1802					-0.003777748604079534
DMLRGHVGRQM	11	Unmodified						0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	650.324073	1298.63359	1.352	0.00087923	-6.0785	-0.003953	-4.7265	-0.0030738	650.3217192218202	25.033	0.096542	25.021	24.972	25.069	-0.012011	1101	49	0.95892316	0.029314697	0.9574037	388.1606		11.866241	0.0059464	0.0011832	0.0010724	NaN	6.9844	129	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11927	+		2343	10327	1367	1389							-0.003777748604079534
DMLYSSMI	8	Unmodified	_DMLYSSMI_					0	0	0			REV__ENSG00000198353|ENST00000430889|HOXC4	REV__ENSG00000198353|ENST00000430889|HOXC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.4212667162002	1	959.421267	958.41399	1.7181	0.0016484	2.31	0.0022162	4.0281	0.0038647	959.4235591142997	25.443	0.096512	25.443	25.395	25.491	0	243	55	1.4749115	0.031981707	1.4749115	299.63037	0	6.4971313						98	5	2	NaN	NaN	NaN	0.80071	1	7287	7287		9.1232	0	1	7672.5	+		2344	11173	1368	1390	1803	1803					-0.06688018591466971
DMLYSSMI	8	Unmodified						0	0	0			REV__ENSG00000198353|ENST00000430889|HOXC4	REV__ENSG00000198353|ENST00000430889|HOXC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	959.421267	958.41399	1.7181	0.0016484	2.31	0.0022162	4.0281	0.0038647	959.4235591142997	25.443	0.096512	25.443	25.395	25.491	0	243	55	1.4749115	0.031981707	1.4749115	299.63037		6.4971313	0.0061619	0.00043186	-0.0010169	NaN	9.1232	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7672.5	+		2345	11173	1368	1390							-0.06688018591466971
DMSLVWQM	8	Unmodified	_DMSLVWQM_					0	0	0		tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1	tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1	tr|U7T719|U7T719_FUSNUPhagetailtapemeasureprotein,TP901family,coreregionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00086PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.22771331765	2	505.227713	1008.44087	0.88689	0.00044808	-1.4618	-0.00073854	-0.57491	-0.00029046	505.72877138627706	33.504	0.072365	33.504	33.48	33.552	0	1335	64	0.8154261	0.03880322	0.8154261	331.07254	0	15.754578						147	4	3	NaN	NaN	NaN	0.84727	1	8909	8909		1.2418	0	1	12276			2346	14005	1369	1391	1804	1804					-0.0630090998029118
DNAFVTCNK	9	Unmodified	_DNAFVTCNK_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.23184156785	2	506.231842	1010.44913	1.6187	0.00081942	-11.111	-0.0056248	-9.4924	-0.0048054	506.2258236040705	24.912	0.16894	24.912	24.864	25.033	0	1317	40	0.8265074	0.024000287	0.8265074	335.5627	0	9.744141						121	8	2	NaN	NaN	NaN	0.23112	1	8986	8986		23.334	5.5541	1	12867	+		2347	9423	1370	1392	1805	1805					-0.055676397393199295
DNAFVTCNK	9	Unmodified						0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.231842	1010.44913	1.6187	0.00081942	-11.111	-0.0056248	-9.4924	-0.0048054	506.2258236040705	24.912	0.16894	24.912	24.864	25.033	0	1317	40	0.8265074	0.024000287	0.8265074	335.5627		9.744141	0.018356	0.00060798	0.00075972	NaN	23.334	121	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12867	+		2348	9423	1370	1392							-0.055676397393199295
DNAFVTCNK	9	Unmodified						0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.231842	1010.44913	1.3976	0.00070749	-12.969	-0.0065655	-11.572	-0.005858	506.727098708881	24.888	0.096521	24.875	24.851	24.948	-0.012394	1317	43	0.8265074	0.025850594	0.82498795	335.5627		10.495392	-0.018356	-0.0012734	-0.00075972	NaN	23.334	95	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7419.4	+		2349	9423	1370	1392							-0.055676397393199295
DNCYIIACNQV	11	Unmodified	_DNCYIIACNQV_					0	0	0			REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.1863742275333	3	419.186374	1254.53729	1.3366	0.00056028	0.68831	0.00028853	2.0249	0.00084882	419.18660448387914	14.525	0.047949	14.525	14.501	14.549	0	1506	43	0.70979416	0.026024997	0.70979416	431.1299	0	15.807617						63	3	3	NaN	NaN	NaN	0.65577	1	17885	17885		4.9007	0	1	4557.7	+		2350	10932	1371	1393	1806	1806					-0.07979387211003086
DNIDVAVVQP	10	Unmodified	_DNIDVAVVQP_					0	0	0			REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF;REV__ENSG00000111913|ENST00000643898|RIPOR2	REV__ENSG00000111913|ENST00000643898|RIPOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.5524155443	1	1069.55242	1068.54514	1.9054	0.0020379	-1.9881	-0.0021263	-0.082687	-8.8439E-05	1069.550037273768	22.477	0.072247	22.477	22.453	22.525	0	144	46	1.533442	0.026562572	1.533442	311.0656	0	5.388336						94	4	3	NaN	NaN	NaN	0.72631	1	11496	11496		6.2502	0	1	6517.2	+		2351	8458;9110	1372	1394	1807	1807					0.013608313724262189
DNLKEYLL	8	Unmodified	_DNLKEYLL_					0	0	0		ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5407882255	1	1007.54079	1006.53351	1.5441	0.0015558	-0.84911	-0.00085551	0.69503	0.00070027	1007.5394631178764	29.473	0.21715	29.466	29.417	29.635	-0.0070667	129	136	1.5422925	0.07972145	1.540773	313.1066	0	16.18454						611	10	4	NaN	NaN	NaN	0.528	1	8672	8672		29.598	1.8095	1	147890			2352	5623	1373	1395	1808	1808					0.030506343490856125
DNLYVINTFA	10	Unmodified	_DNLYVINTFA_					0	0	0			REV__ENST00000352460.7_1_11:18303495-18317646:-|nuORF	REV__ENST00000352460.7_1_11:18303495-18317646:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2954960696501	2	585.295496	1168.57644	1.7455	0.0010216	-11.584	-0.00678	-9.8384	-0.0057584	585.7927018179037	24.671	0.21703	24.671	24.502	24.719	0	1191	70	0.90387505	0.042287946	0.90387505	366.30612	0	17.137665						267	10	4	NaN	NaN	NaN	0.64611	1	15440	15440		11.739	1.3787	1	51983	+		2353	9083	1374	1396	1809	1809					-0.001105955934690428
DNMDTKIKFTY	11	Unmodified	_DNMDTKIKFTY_					0	0	0			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3317525777001	2	688.331753	1374.64895	1.5635	0.0010762	1.695	0.0011667	3.2585	0.0022429	688.3322644386799	24.261	0.048231	24.261	24.237	24.285	0	1038	73	0.997351	0.043882072	0.997351	403.48065	0	17.752594						151	3	3	NaN	NaN	NaN	0.74155	1	19851	19851		4.7291	0	1	8789.9	+		2354	13409	1375	1397	1810	1810					-0.023386295822092507
DNNPNIALILV	11	Unmodified	_DNNPNIALILV_					0	0	0		tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1	tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1	tr|U7SRV9|U7SRV9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01448PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.33769523535	2	598.337695	1194.66084	0.68239	0.0004083	0.16633	9.9521E-05	0.84872	0.00050782	598.337653603519	29.811	0.096516	29.803	29.779	29.876	-0.0070648	981	100	1.0320443	0.06018555	1.0305248	418.14163	0	24.384674						198	5	2	NaN	NaN	NaN	0.78084	1	15667	15667		0.094767	0.094767	1	20293			2355	13819	1376	1398	1811	1811					0.0712935522326461
DNQTCDGELL	10	Unmodified	_DNQTCDGELL_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2347781873001	2	554.234778	1106.455	1.3728	0.00076085	-2.9541	-0.0016372	-1.5813	-0.00087639	554.2335999181158	28.291	0.19302	28.291	28.243	28.436	0	1269	76	0.8560222	0.046099424	0.8560222	347.14026	0	18.69458						198	9	3	NaN	NaN	NaN	0.62092	1	13107	13107		13.463	0.87517	1	18467			2356	4452	1377	1399	1812	1812					-0.09396586018283415
DNRSAEMME	9	Unmodified	_DNRSAEMME_					0	0	0		THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant;ENSG00000144229|ENST00000409968|THSD7B	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.71569836465	2	541.715698	1081.41684	0.93052	0.00050408	1.8671	0.0010115	2.7977	0.0015155	541.7162230031889	31.379	0.1689	31.374	31.277	31.446	-0.0050716	1290	43	0.84311575	0.02582264	0.8415963	342.0037	0	10.4747925						131	8	2	NaN	NaN	NaN	0.58159	1	11713	11713		6.2502	0.78436	1	10870			2357	3467	1378	1400	1813	1813					-0.12060795204615715
DNSTYLSKL	9	Unmodified	_DNSTYLSKL_					0	0	0		tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	tr|U7ST90|U7ST90_FUSNUYkuDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01333PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7665714547	2	520.766571	1039.51859	1.8852	0.00098173	5.9157	0.0030807	7.8009	0.0040624	521.2699632703744	11.716	0.096002	11.716	11.692	11.788	0	1248	52	0.8689189	0.031320512	0.8689189	352.64917	0	12.711365						108	5	3	NaN	NaN	NaN	0.59509	1	10192	10192		5.6942	0.2283	1	6820.1			2358	13847	1379	1401	1814	1814					0.0004114248110909102
DNWFRSLHRKW	11	Unmodified	_DNWFRSLHRKW_					0	0	0			REV__ENST00000600944.5_1_19:50195509-50200723:+|nuORF	REV__ENST00000600944.5_1_19:50195509-50200723:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.6004979050333	3	515.600498	1543.77966	1.8362	0.00094676	7.9573	0.0041028	9.7935	0.0050495	515.6033629647164	24.502	0.048275	24.502	24.478	24.526	0	1356	25	0.8024889	0.014787793	0.8024889	486.4387	0	8.963806						34	3	2	NaN	NaN	NaN	0.77509	1	20690	20690		1.1021	0.6699	1	2451.2	+		2359	10540	1380	1402	1815	1815					0.029525669714757896
DNYVGIIL	8	Unmodified	_DNYVGIIL_					0	0	0		tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1	tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1	tr|U7SM02|U7SM02_FUSNUSseBproteinN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02002PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4931097514003	1	906.49311	905.485833	1.9244	0.0017445	-0.81087	-0.00073504	1.1135	0.0010094	906.4922534983293	28.17	0.096577	28.161	28.112	28.209	-0.0089779	297	52	1.4428991	0.030264378	1.4413797	293.36972	0	6.153351						79	5	2	NaN	NaN	NaN	0.84512	1	6053	6053		2.4615	0	1	6483.2			2360	13771	1381	1403	1816	1816					0.0293098014892621
DPAEALQL	8	Unmodified	_DPAEALQL_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4410741809	1	856.441074	855.433798	1.8153	0.0015547	-0.43413	-0.00037181	1.3812	0.0011829	856.4410675966362	21.44	0.072279	21.44	21.392	21.464	0	411	37	1.3751161	0.021446228	1.3751161	279.8329	0	4.364258						65	4	2	NaN	NaN	NaN	0.35353	1	5471	5471		38.918	5.2196	1	4649.1			2361	5141	1382	1404	1817	1817					0.00029816735138865624
DPAGGGDPIL	10	Unmodified	_DPAGGGDPIL_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.4468878403001	1	911.446888	910.439611	1.6777	0.0015291	-1.7768	-0.0016195	-0.099099	-9.0324E-05	911.4455666217315	24.068	0.12064	24.068	24.019	24.14	0	456	76	1.348284	0.04473436	1.348284	274.11026	0	9.094635						144	6	2	NaN	NaN	NaN	0.0014599	1	6231	6231		87.778	54.08	1	14343			2362	5810	1383	1405	1818	1818					-0.019190847531831423
DPAGGGDPIL	10	Unmodified	_DPAGGGDPIL_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	911.4468878403001	1	911.446888	910.439611	1.8082	0.001648	-0.49037	-0.00044694	1.3178	0.0012011	911.4466472271898	24.067	0.096506	24.055	24.006	24.103	-0.012749	456	79	1.348284	0.046521187	1.3467646	274.11026	0	9.457916						171	5	3	NaN	NaN	NaN	0.01359	1	6110	6110		66.656	38.868	1	14215			2363	5810	1383	1405	1819	1819					-0.019190847531831423
DPAGVHPPR	9	Unmodified	_DPAGVHPPR_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.2486832628	2	473.248683	944.482814	0.81054	0.00038359	-2.3436	-0.0011091	-1.5331	-0.00072553	473.2479260679061	12.604	0.048027	12.604	12.58	12.628	0	1350	49	0.80618626	0.029572368	0.80618626	327.61923	0	12.01767						81	3	3	NaN	NaN	NaN	0.060816	1	6932	6932		42.318	25.733	1	6823.6			2364	514	1384	1406	1820	1820					0.008351498147590064
DPAGVHPPR	9	Unmodified	_DPAGVHPPR_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.2486832628	2	473.248683	944.482814	0.74153	0.00035093	-1.6127	-0.00076319	-0.87112	-0.00041226	473.248120127843	12.676	0.096047	12.676	12.652	12.748	0	1353	46	0.8043377	0.027731597	0.8043377	326.868	0	11.269623						70	5	2	NaN	NaN	NaN	0.060816	1	6933	6933		42.318	25.733	1	6135.6			2365	514	1384	1406	1821	1821					0.008351498147590064
DPAITLLNN	9	Unmodified	_DPAITLLNN_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7638318005	2	485.763832	969.513111	1.827	0.00088751	3.0395	0.0014765	4.8665	0.002364	485.7650929834366	30.438	0.072412	30.432	30.408	30.48	-0.0057545	1326	34	0.8209676	0.020310104	0.81944823	333.50253	0	8.25058						53	4	2	NaN	NaN	NaN	0.66529	1	7452	7452		2.1763	0.47414	1	3538.2			2366	2243	1385	1407	1822	1822					0.027134636892810704
DPAYPDITL	9	Unmodified	_DPAYPDITL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4935036819	1	1004.4935	1003.48623	1.4155	0.0014219	-4.5024	-0.0045226	-3.0869	-0.0031007	1004.4879595594256	28.797	0.21719	28.789	28.692	28.909	-0.0083504	231	115	1.4820169	0.06747401	1.4804975	300.8822	0	13.6987						498	10	3	NaN	NaN	NaN	0.089764	1	8541	8541		37.302	10.571	1	71086			2367	2681	1386	1408	1823	1823					-0.015376449219047572
DPAYPDITL	9	Unmodified	_DPAYPDITL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.75039007425	2	502.75039	1003.48623	2.0885	0.00105	-0.222	-0.00011161	1.8665	0.0009384	503.25237658761233	28.773	0.072384	28.765	28.74	28.813	-0.0083504	1317	31	0.8265074	0.018462718	0.82498795	335.59393	0	7.496582						36	4	2	NaN	NaN	NaN	0.33629	1	8545	8545		16.584	3.5813	1	2283.8			2368	2681	1386	1408	1824	1824					-0.015376449219047572
DPAYPDITL	9	Unmodified						0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1004.4935	1003.48623	1.8065	0.0018146	-5.8197	-0.0058458	-4.0132	-0.0040312	1004.487673343775	28.798	0.24134	28.798	28.677	28.918	0	231	112	1.4820169	0.065708876	1.4820169	300.8822		13.340332	0.0045524	-0.00067468	0.00075972	NaN	37.302	533	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73771			2369	2681	1386	1408							-0.015376449219047572
DPDASMGLRE	10	Unmodified	_DPDASMGLRE_					0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7453130838501	2	545.745313	1089.47607	1.1838	0.00064603	-9.0858	-0.0049586	-7.9021	-0.0043125	545.7404415810009	27.253	0.12064	27.253	27.181	27.302	0	1266	64	0.85786515	0.038694263	0.85786515	347.95438	0	15.69458						201	6	3	NaN	NaN	NaN	0.77144	1	12354	12354		2.5994	0.26131	1	15627	+		2370	8514	1387	1409	1825	1825					-0.06508575918769566
DPDASMGLRE	10	Unmodified						0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.745313	1089.47607	1.1838	0.00064603	-9.0858	-0.0049586	-7.9021	-0.0043125	545.7404415810009	27.253	0.12064	27.253	27.181	27.302	0	1266	64	0.85786515	0.038694263	0.85786515	347.95438		15.69458	0.029566	9.0341E-07	0.0026028	NaN	2.5994	201	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15627	+		2371	8514	1387	1409							-0.06508575918769566
DPDASMGLRE	10	Unmodified						0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.745313	1089.47607	1.3337	0.00072784	-9.089	-0.0049603	-7.7553	-0.0042324	545.7404311674218	27.204	0.048279	27.194	27.146	27.194	-0.010126	1272	88	0.854179	0.053429186	0.8526596	346.45923		21.671112	-0.029566	-2.5539E-06	-0.0026028	NaN	2.5994	101	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7106.9	+		2372	8514	1387	1409							-0.06508575918769566
DPDFQPEL	8	Unmodified	_DPDFQPEL_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4309034251002	1	960.430903	959.423627	1.9197	0.0018437	0.09085	8.7255E-05	2.0105	0.001931	960.4300520832923	26.022	0.21723	26.022	25.974	26.191	0	333	67	1.4215236	0.039205194	1.4215236	288.78024	0	7.9644775						292	10	2	NaN	NaN	NaN	0.13059	1	7306	7306		58.235	28.637	1	37264			2373	1077	1388	1410	1826	1826					-0.05770790990072783
DPDFQPEL	8	Unmodified	_DPDFQPEL_					0	0	0		ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	ENSG00000091164|ENST00000217515|TXNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.4309034251002	1	960.430903	959.423627	2.1902	0.0021035	-0.34929	-0.00033547	1.8409	0.0017681	960.4304564308858	26.046	0.24136	26.035	25.938	26.18	-0.011135	327	88	1.425088	0.051687837	1.4235686	289.50436	0	10.500305						345	11	3	NaN	NaN	NaN	0.11674	1	7165	7165		60.982	21.523	1	38229			2374	1077	1388	1410	1827	1827					-0.05770790990072783
DPDNPLVL	8	Unmodified	_DPDNPLVL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.4567242451	1	882.456724	881.449448	2.1486	0.001896	-0.58084	-0.00051257	1.5678	0.0013835	882.456126836127	28.339	0.26544	28.339	28.267	28.532	0	384	109	1.3911947	0.06433177	1.3911947	282.97266	0	13.085266						511	12	2	NaN	NaN	NaN	0.039823	1	5820	5820		82.96	12.36	1	151720			2375	6089	1389	1411	1828	1828					0.003981032521778616
DPDNPLVL	8	Unmodified	_DPDNPLVL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.4567242451	1	882.456724	881.449448	1.4491	0.0012788	-0.44088	-0.00038906	1.0083	0.00088974	882.4562169599269	28.339	0.21719	28.33	28.257	28.474	-0.0089779	381	133	1.3929803	0.07865286	1.3914609	283.33582	0	15.99823						547	10	3	NaN	NaN	NaN	0.039823	1	5699	5699		82.96	12.36	1	147950			2376	6089	1389	1411	1829	1829					0.003981032521778616
DPDPAEPLA	9	Unmodified	_DPDPAEPLA_					0	0	0		ENST00000546155.5_1_19:41119378-41119609:+|nuORF	ENST00000546155.5_1_19:41119378-41119609:+|nuORF	ENST00000546155.5_1_19:41119378-41119609:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4309034251	1	924.430903	923.423627	2.0046	0.0018532	-1.6322	-0.0015089	0.37244	0.0003443	924.4293994921577	25.346	0.14475	25.346	25.274	25.419	0	411	52	1.3751161	0.030383706	1.3751161	279.50674	0	6.175812						138	7	2	NaN	NaN	NaN	0.27442	1	6467	6467		20.555	5.3801	1	11968			2377	7525	1390	1412	1830	1830					-0.041147909900928425
DPDPEGLL	8	Unmodified	_DPDPEGLL_					0	0	0		ENSG00000177045|ENST00000317578|SIX5;ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.4094397015002	1	855.40944	854.402163	1.8105	0.0015487	0.96911	0.00082899	2.7796	0.0023777	855.4103569233758	27.784	0.072367	27.784	27.76	27.833	0	462	79	1.3447032	0.046575785	1.3447032	273.64914	0	9.4782715						94	4	2	NaN	NaN	NaN	0.72043	1	5454	5454		17.78	0	1	6694.3			2378	5056	1391	1413	1831	1831					-0.030861760187804066
DPDQLYTTL	9	Unmodified	_DPDQLYTTL_					0	0	0		nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000586972.1_1_17:40266182-40266371:-|nuORF	nc|ENSG00000108773|Q92830-2|KAT2A	nc|ENSG00000108773|Q92830-2|KAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5098820276	1	1065.50988	1064.50261	1.0428	0.0011111	6.5879	0.0070195	7.6307	0.0081306	1065.5169591271576	26.891	0.1448	26.88	26.808	26.952	-0.010643	138	109	1.5369828	0.063753486	1.5354633	311.79892	0	12.933319						156	7	2	NaN	NaN	NaN	0.25548	1	11062	11062		21.771	5.1869	1	19816			2379	1693	1392	1414	1832	1832					-0.02706563755782554
DPDRMFVEL	9	Unmodified	_DPDRMFVEL_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2684240394001	2	561.268424	1120.5223	1.6506	0.00092644	-1.5523	-0.00087127	0.098298	5.5171E-05	561.267544284704	27.133	0.24133	27.133	27.036	27.277	0	1263	91	0.85970795	0.055238724	0.85970795	348.5811	0	22.397339						532	11	4	NaN	NaN	NaN	0.02431	1	13697	13697		66.544	24.226	1	116700			2380	3502	1393	1415	1833	1833					-0.03314511016696997
DPDRMFVEL	9	Unmodified	_DPDRMFVEL_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2684240394001	2	561.268424	1120.5223	1.2532	0.0007034	-2.0737	-0.0011639	-0.8205	-0.00046052	561.2671774648784	27.132	0.2172	27.122	27.049	27.267	-0.010126	1263	94	0.85970795	0.05707693	0.8581885	348.5811	0	23.14264						380	10	4	NaN	NaN	NaN	0.32672	1	13292	13292		17.198	1.7357	1	94374			2381	3502	1393	1415	1834	1834					-0.03314511016696997
DPDSNPYSL	9	Unmodified	_DPDSNPYSL_					0	0	0		ENST00000476672.1_1_3:180675662-180688154:+|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1;ENSG00000129245|ENST00000250113|FXR2	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	ENST00000476672.1_1_3:180675662-180688154:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4316317066001	1	1007.43163	1006.42436	1.574	0.0015857	0.0028077	2.8285E-06	1.5768	0.0015885	1007.4321939228533	22.79	0.16867	22.776	22.728	22.896	-0.01354	234	88	1.4802408	0.051539898	1.4787214	300.5097	0	10.463287						266	8	3	NaN	NaN	NaN	0.045904	1	8660	8660		48.65	21.354	1	23648			2382	1958	1394	1416	1835	1835					-0.07859996341028364
DPDSTTSS	8	Unmodified	_DPDSTTSS_					0	0	0			REV__ENST00000540082.1_1_17:33841835-33841925:-|nuORF	REV__ENST00000540082.1_1_17:33841835-33841925:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.16160485669997	2	405.161605	808.308657	0.49926	0.00020228	2.7537	0.0011157	3.253	0.001318	405.1630474311818	35.482	0.14474	35.482	35.458	35.603	0	1425	49	0.7599118	0.029659033	0.7599118	309.5591	0	12.08197						163	7	3	NaN	NaN	NaN	0.84455	1	4859	4859		2.7852	1.3456	1	16990	+		2383	12690	1395	1417	1836	1836					-0.10316520191895506
DPEEDAPVL	9	Unmodified	_DPEEDAPVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4520327977001	1	984.452033	983.444756	2.1492	0.0021158	-0.20632	-0.00020311	1.9429	0.0019127	984.4515954846927	23.706	0.21681	23.706	23.658	23.875	0	291	76	1.446459	0.04450643	1.446459	293.74423	0	9.038269						309	10	3	NaN	NaN	NaN	0.018156	1	7999	7999		74.332	40.634	1	49035			2384	4933	1396	1418	1837	1837					-0.047628256812231484
DPEEDAPVL	9	Unmodified	_DPEEDAPVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4520327977001	1	984.452033	983.444756	2.0334	0.0020017	1.0464	0.0010301	3.0798	0.0030319	984.4531286803993	23.706	0.19274	23.693	23.645	23.837	-0.013048	291	67	1.446459	0.039159417	1.4449396	293.74423	0	7.952423						311	9	4	NaN	NaN	NaN	0.01047	1	7822	7822		91.429	57.73	1	47277			2385	4933	1396	1418	1838	1838					-0.047628256812231484
DPEEDEPTL	9	Unmodified	_DPEEDEPTL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENST00000498129.6_1_1:212502517-212507353:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7220265653001	2	522.722027	1043.4295	1.3205	0.00069024	-2.6858	-0.0014039	-1.3653	-0.00071367	522.7206405709921	21.32	0.14435	21.32	21.272	21.416	0	1335	40	0.8154261	0.024018466	0.8154261	330.92307	0	9.7473755						112	7	2	NaN	NaN	NaN	0.49672	1	10342	10342		9.746	2.952	1	8908.7			2386	882	1397	1419	1839	1839					-0.09047737269065692
DPEEDEPTL	9	Unmodified	_DPEEDEPTL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENST00000498129.6_1_1:212502517-212507353:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.436776664	1	1044.43678	1043.4295	1.6718	0.0017461	-0.012077	-1.2614E-05	1.6597	0.0017335	1044.4356638054453	21.32	0.19252	21.32	21.248	21.44	0	267	70	1.4606913	0.040906787	1.4606913	296.3987	0	8.30069						267	9	3	NaN	NaN	NaN	0.011206	1	10343	10343		89.256	62.524	1	25905			2387	882	1397	1419	1840	1840					-0.09047737269065692
DPEEDEPTL	9	Unmodified	_DPEEDEPTL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENST00000498129.6_1_1:212502517-212507353:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.436776664	1	1044.43678	1043.4295	1.4029	0.0014652	0.89058	0.00093015	2.2935	0.0023954	1044.4377214259564	21.296	0.19237	21.282	21.234	21.426	-0.014006	267	67	1.4606913	0.039117813	1.4591719	296.3987	0	7.937683						265	9	3	NaN	NaN	NaN	0.0062755	1	10139	10139		99.986	41.216	1	26446			2388	882	1397	1419	1841	1841					-0.09047737269065692
DPEENSTLFMG	11	Unmodified	_DPEENSTLFMG_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.26353562675	2	620.263536	1238.51252	1.3565	0.00084141	-2.064	-0.0012802	-0.70743	-0.00043879	620.7627333462876	23.151	0.16892	23.138	23.114	23.283	-0.013294	1200	46	0.89836043	0.02758503	0.896841	363.83127	0	11.171783						117	8	3	NaN	NaN	NaN	0.67707	1	16744	16744		8.962	1.3744	1	8011.5			2389	2715	1398	1420	1842	1842					-0.09719743812729575
DPEENSTLFMG	11	Unmodified						0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.263536	1238.51252	1.7759	0.0011015	4.7064	0.0029192	6.4823	0.0040207	620.7698081406647	23.248	0.048225	23.248	23.248	23.296	0	1179	70	0.9112251	0.042255938	0.9112251	369.04138		17.113464	0.055186	0.0049046	0.0071921	NaN	8.962	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3768.7			2390	2715	1398	1420							-0.09719743812729575
DPEKSDPVI	9	Unmodified	_DPEKSDPVI_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.25329690395	2	500.253297	998.492041	1.4954	0.00074808	2.9405	0.001471	4.4359	0.0022191	500.25474606491673	17.378	0.19203	17.364	17.34	17.532	-0.013569	1323	70	0.8228144	0.04248959	0.82129496	334.11707	0	17.253601						203	9	3	NaN	NaN	NaN	0.16939	1	8340	8340		27.296	1.1813	1	28748			2391	2132	1399	1421	1843	1843					-0.007265464102374608
DPEQEEVEL	9	Unmodified	_DPEQEEVEL_					0	0	0		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.4789758297	1	1087.47898	1086.4717	2.0839	0.0022662	-1.6984	-0.001847	0.38549	0.00041921	1087.4772013509337	22.766	0.12058	22.766	22.742	22.863	0	141	94	1.5352125	0.0549134	1.5352125	311.35922	0	11.137085						189	6	3	NaN	NaN	NaN	0.010878	1	12228	12228		90.252	61.356	1	16172			2392	2434	1400	1422	1844	1844					-0.06807761860704886
DPEQEEVEL	9	Unmodified	_DPEQEEVEL_					0	0	0		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.4789758297	1	1087.47898	1086.4717	1.2273	0.0013347	-0.79938	-0.00086931	0.42793	0.00046536	1087.4781494677795	22.79	0.12041	22.776	22.752	22.872	-0.01354	138	88	1.5369828	0.0513705	1.5354633	311.71826	0	10.418549						208	6	3	NaN	NaN	NaN	0.019939	1	11915	11915		72.076	31.922	1	17389			2393	2434	1400	1422	1845	1845					-0.06807761860704886
DPETSLPTQL	10	Unmodified	_DPETSLPTQL_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.777136141	2	550.777136	1099.53972	1.2653	0.00069687	4.46	0.0024565	5.7253	0.0031533	550.7808320580647	20.285	0.072132	20.285	20.285	20.357	0	1233	88	0.87812483	0.05337721	0.87812483	356.131	0	21.647583						219	4	4	NaN	NaN	NaN	0.67523	1	12827	12827		9.746	0.8269	1	33210			2394	5579	1401	1423	1846	1846					-0.006068922100439522
DPEVLSIFV	9	Unmodified	_DPEVLSIFV_					0	0	0		ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5455392524001	1	1018.54554	1017.53826	2.2223	0.0022635	-1.2627	-0.0012861	0.95965	0.00097745	1018.5439205592745	29.063	0.072378	29.063	29.039	29.112	0	240	55	1.4766881	0.03197825	1.4766881	299.7442	0	6.491089						98	4	3	NaN	NaN	NaN	0.39244	1	9278	9278		14.042	4.2956	1	9355.2			2395	1528	1402	1424	1847	1847					0.030195184918625273
DPFHKAIRR	9	Unmodified	_DPFHKAIRR_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.55259653026667	3	380.552597	1138.63596	1.4205	0.00054056	-3.1672	-0.0012053	-1.7467	-0.00066471	380.55141527281756	12.148	0.16813	12.148	12.076	12.244	0	1527	37	0.69677675	0.022321641	0.69677675	423.69098	0	13.573212						182	8	3	NaN	NaN	NaN	0.089764	1	14411	14411		27.046	17.435	1	22004			2396	4958	1403	1425	1848	1848					0.07218764931235455
DPFHKAIRR	9	Unmodified	_DPFHKAIRR_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.55259653026667	3	380.552597	1138.63596	1.3729	0.00052248	-1.4493	-0.00055152	-0.076313	-2.9041E-05	380.5517617658889	12.51	0.16807	12.501	12.357	12.525	-0.0088415	1527	31	0.69677675	0.018603384	0.6952573	423.69098	0	11.312225						99	8	2	NaN	NaN	NaN	0.20577	1	13943	13943		16.858	5.1194	1	8264.5			2397	4958	1403	1425	1849	1849					0.07218764931235455
DPFPAAIIL	9	Unmodified	_DPFPAAIIL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.77621089425	2	478.776211	955.537869	1.1225	0.00053742	-2.1103	-0.0010104	-0.9878	-0.00047294	478.7746446321107	35.844	0.14468	35.844	35.771	35.916	0	1344	40	0.8098828	0.024023652	0.8098828	329.06683	0	9.761169						127	7	3	NaN	NaN	NaN	0.16171	1	7235	7235		27.789	0	1	11478			2398	4594	1404	1426	1850	1850					0.058321435626680795
DPFPAAIIL	9	Unmodified	_DPFPAAIIL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5451453219001	1	956.545145	955.537869	1.4633	0.0013997	0.46252	0.00044242	1.9258	0.0018421	956.5445436519649	35.82	0.28924	35.82	35.747	36.036	0	285	169	1.4500183	0.099647045	1.4500183	294.58585	0	20.244293						823	13	4	NaN	NaN	NaN	0.014943	1	7237	7237		78.398	31.076	1	241500			2399	4594	1404	1426	1851	1851					0.058321435626680795
DPFPAAIIL	9	Unmodified	_DPFPAAIIL_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5451453219001	1	956.545145	955.537869	1.5363	0.0014695	-0.33883	-0.00032411	1.1975	0.0011454	956.5446814536635	35.818	0.38562	35.819	35.722	36.108	0.00052643	282	157	1.4517976	0.0925194	1.4502782	294.94733	0	18.796265						808	17	4	NaN	NaN	NaN	0.00080915	1	7095	7095		114.61	63.867	1	240910			2400	4594	1404	1426	1852	1852					0.058321435626680795
DPFPAAIIL	9	Unmodified						0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.776211	955.537869	1.0958	0.00052463	-2.2171	-0.0010615	-1.1213	-0.00053685	478.7756192725576	35.818	0.12049	35.819	35.77	35.891	0.00052643	1344	34	0.8098828	0.020327687	0.8083634	329.06683		8.25943	-0.01258	-4.3536E-05	-0.00075972	NaN	27.789	107	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10171			2401	4594	1404	1426							0.058321435626680795
DPFWDLSL	8	Unmodified	_DPFWDLSL_					0	0	0		nc|ENSG00000036672|O75604-2|USP2;nc|ENSG00000036672|O75604-3|USP2;nc|ENSG00000036672|O75604-4|USP2;ENSG00000036672|ENST00000260187|USP2	nc|ENSG00000036672|O75604-2|USP2	nc|ENSG00000036672|O75604-2|USP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4723743093001	1	992.472374	991.465098	1.9587	0.001944	1.0237	0.001016	2.9824	0.00296	992.4728137702261	36.229	0.07233	36.229	36.205	36.278	0	294	31	1.4446791	0.017801642	1.4446791	293.34998	0	3.6147156						54	4	2	NaN	NaN	NaN	0.8439	1	8256	8256		3.1533	0	1	3120.3			2402	512	1405	1427	1853	1853					-0.030976102307590736
DPGAPGHG	8	Unmodified	_DPGAPGHG_					0	0	0		CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.3107287099001	1	707.310729	706.303452	0.86998	0.00061534	-3.8725	-0.0027391	-3.0025	-0.0021237	707.3082848806348	30.366	0.14479	30.359	30.335	30.48	-0.0064106	696	61	1.2044523	0.036115766	1.2029328	245.92026	0	7.3739777						102	7	2	NaN	NaN	NaN	0.84651	1	3275	3275		1.6704	0	1	7934.5			2403	233	1406	1428	1854	1854					-0.06144734473184599
DPGAPGHG	8	Unmodified						0	0	0		CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	CSMD3|p.T3061A|1|0.14|ENSG00000164796|chr8:112287214-112287214|T/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	707.310729	706.303452	1.372	0.0009704	-6.3063	-0.0044605	-4.9344	-0.0034901	707.305501874183	30.391	0.024137	30.391	30.391	30.415	0	699	31	1.2026466	0.018055916	1.2026466	245.55159		3.6865845	0.015768	-0.00094029	-0.00014313	NaN	1.6704	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2347.9			2404	233	1406	1428							-0.06144734473184599
DPGHPDDPL	9	Unmodified	_DPGHPDDPL_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.71433891895	2	481.714339	961.414125	1.9783	0.00095299	-2.8684	-0.0013817	-0.89007	-0.00042876	481.7132243913681	17.429	0.071953	17.429	17.429	17.501	0	1383	58	0.7858409	0.035149574	0.7858409	319.2706	0	14.280518						85	4	2	NaN	NaN	NaN	0.31737	1	7354	7354		17.799	2.3363	1	6838.6			2405	5140	1407	1429	1855	1855					-0.06812559275613239
DPGPDFVV	8	Unmodified	_DPGPDFVV_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	845.4039603931001	1	845.40396	844.396684	1.4496	0.0012255	-0.36266	-0.0003066	1.0869	0.0009189	845.4039685084724	27.229	0.24127	27.229	27.133	27.374	0	471	70	1.3393306	0.041208267	1.3393306	272.60693	0	8.387512						269	11	2	NaN	NaN	NaN	0.65075	1	5323	5323		22.126	9.5385	1	32095			2406	55	1408	1430	1856	1856					-0.031738548106091
DPGPDFVV	8	Unmodified	_DPGPDFVV_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	845.4039603931001	1	845.40396	844.396684	0.78369	0.00066253	1.6909	0.0014295	2.4746	0.002092	845.4052995905818	27.204	0.21719	27.194	27.146	27.363	-0.010126	468	79	1.3411216	0.0465858	1.3396021	272.9715	0	9.482056						275	10	3	NaN	NaN	NaN	0.084194	1	5190	5190		68.108	39.442	1	27127			2407	55	1408	1430	1857	1857					-0.031738548106091
DPGPEPSVPQ	10	Unmodified	_DPGPEPSVPQ_					0	0	0			REV__ENST00000375173.1_1_9:100364753-100365089:-|nuORF	REV__ENST00000375173.1_1_9:100364753-100365089:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.7430963584	2	511.743096	1021.47164	2.3234	0.001189	-0.90184	-0.00046151	1.4215	0.00072745	511.7427362127687	23.103	0.12045	23.103	23.031	23.152	0	1296	70	0.8394264	0.04245746	0.8394264	340.7584	0	17.23523						82	6	2	NaN	NaN	NaN	0.77024	1	9426	9426		2.8895	0.71314	1	4841.5	+		2408	9670	1409	1431	1858	1858					-0.03823717070042676
DPGRDYEL	8	Unmodified	_DPGRDYEL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.72216395104994	2	482.722164	963.429775	2.5196	0.0012163	-2.4258	-0.001171	0.093813	4.5286E-05	482.7210859878992	18.077	0.31172	18.077	18.005	18.316	0	1344	64	0.8098828	0.038815916	0.8098828	329.0286	0	15.769592						519	14	4	NaN	NaN	NaN	0.36826	1	7419	7419		38.131	8.5325	1	149320			2409	1218	1410	1432	1859	1859					-0.05340272758576248
DPGRDYEL	8	Unmodified	_DPGRDYEL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.72216395104994	2	482.722164	963.429775	2.7727	0.0013385	-2.6349	-0.0012719	0.13786	6.655E-05	482.72094433808326	18.074	0.31196	18.06	18.012	18.324	-0.013786	1344	64	0.8098828	0.038815916	0.8083634	329.0286	0	15.769592						521	14	5	NaN	NaN	NaN	0.54116	1	7267	7267		28.896	12.311	1	157620			2410	1218	1410	1432	1860	1860					-0.05340272758576248
DPGWLRHG	8	Unmodified	_DPGWLRHG_					0	0	0			REV__ENST00000458001.2_1_13:114546461-114546707:+|nuORF	REV__ENST00000458001.2_1_13:114546461-114546707:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.23557588755006	2	469.235576	936.456599	1.6002	0.00075089	7.3618	0.0034544	8.9621	0.0042053	469.2382981586376	16.11	0.047964	16.11	16.086	16.134	0	1371	28	0.79324204	0.016649783	0.79324204	322.39853	0	6.7669983						38	3	2	NaN	NaN	NaN	0.80071	1	6753	6753		9.1232	0.83292	1	2331.8	+		2411	12256	1411	1433	1861	1861					-0.014171193567108276
DPGYWAPIR	9	Unmodified	_DPGYWAPIR_					0	0	0			REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7719911836	2	537.771991	1073.52943	1.2926	0.00069514	-9.2274	-0.0049622	-7.9347	-0.0042671	537.7674494333925	19.539	0.21667	19.524	19.428	19.645	-0.014143	1260	76	0.8615505	0.0460397	0.8600311	349.51398	0	18.677368						254	10	3	NaN	NaN	NaN	0.47587	1	11405	11405		10.605	2.3601	1	41798	+		2412	13573	1412	1434	1862	1862					-0.0043941035396528605
DPHEREFVI	9	Unmodified	_DPHEREFVI_					0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2854626996001	2	571.285463	1140.55637	2.0355	0.0011628	-5.4262	-0.0030999	-3.3907	-0.0019371	571.2818700488874	19.54	0.45603	19.54	19.3	19.756	0	1215	73	0.8891654	0.044162333	0.8891654	360.4481	0	17.902435						509	20	2	NaN	NaN	NaN	0.071077	1	14459	14459		40.006	19.493	1	116110			2413	698	1413	1435	1863	1863					-0.008283465334216089
DPHEREFVI	9	Unmodified	_DPHEREFVI_					0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2854626996001	2	571.285463	1140.55637	1.3709	0.00078315	-3.3563	-0.0019174	-1.9854	-0.0011343	571.2832776382434	19.587	0.33698	19.573	19.5	19.837	-0.014141	1215	70	0.8891654	0.042324543	0.88764596	360.4481	0	17.15741						397	15	2	NaN	NaN	NaN	0.057383	1	13997	13997		43.776	16.479	1	93082			2414	698	1413	1435	1864	1864					-0.008283465334216089
DPHEREFVI	9	Unmodified						0	0	0		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.285463	1140.55637	1.708	0.00097578	-11.193	-0.0063944	-9.4849	-0.0054186	571.2791180031077	19.924	0.07214	19.909	19.861	19.934	-0.014141	1221	31	0.885486	0.018396974	0.88396657	358.95657		7.457733	0.18469	-0.0051349	-0.0025994	NaN	40.006	68	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4365.9			2415	698	1413	1435							-0.008283465334216089
DPHFSPAEL	9	Unmodified	_DPHFSPAEL_					0	0	0		ENST00000572680.1_1_17:7219444-7221143:-|nuORF;ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	ENST00000572680.1_1_17:7219444-7221143:-|nuORF	ENST00000572680.1_1_17:7219444-7221143:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4734369418001	1	1012.47344	1011.46616	1.3775	0.0013946	-10.55	-0.010682	-9.1725	-0.0092869	1012.4624643927796	29.618	0.14477	29.61	29.562	29.707	-0.0070648	207	61	1.496219	0.03550136	1.4946996	303.73306	0	7.2067566						212	7	3	NaN	NaN	NaN	0.032764	1	8845	8845		55.494	8.4535	1	19501			2416	5996	1414	1436	1865	1865					-0.03911395861860001
DPHFSPAEL	9	Unmodified						0	0	0		ENST00000572680.1_1_17:7219444-7221143:-|nuORF;ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	ENST00000572680.1_1_17:7219444-7221143:-|nuORF	ENST00000572680.1_1_17:7219444-7221143:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1012.47344	1011.46616	1.7586	0.0017805	-11.147	-0.011286	-9.3887	-0.0095058	1012.4630314650168	29.642	0.16891	29.642	29.522	29.691	0	207	70	1.496219	0.040832996	1.496219	303.73306		8.289124	0.01602	-0.00036706	0.00075972	NaN	55.494	238	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20795			2417	5996	1414	1436							-0.03911395861860001
DPILTEVTL	9	Unmodified	_DPILTEVTL_					0	0	0		ENST00000526700.5_1_16:70530266-70542451:-|nuORF;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	ENST00000526700.5_1_16:70530266-70542451:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5561039387002	1	1000.5561	999.548827	1.2635	0.0012642	-0.95817	-0.00095871	0.30529	0.00030546	1000.5558291860749	30.994	0.19308	30.994	30.922	31.115	0	207	91	1.496219	0.053257704	1.496219	303.78174	0	10.813049						326	9	3	NaN	NaN	NaN	2.9468E-07	1	8578	8578		130.62	0.99128	1	48359			2418	1412	1415	1437	1866	1866					0.04903501146293365
DPITLFVAL	9	Unmodified	_DPITLFVAL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5713600724001	1	988.57136	987.564084	1.0821	0.0010697	0.46036	0.00045509	1.5424	0.0015248	988.5727507676123	38.66	0.14417	38.66	38.612	38.756	0	204	64	1.4979934	0.037270427	1.4979934	304.1922	0	7.56839						171	7	2	NaN	NaN	NaN	0.094712	1	8144	8144		36.586	16.031	1	17065			2419	1039	1416	1438	1867	1867					0.06980412734139918
DPITLFVAL	9	Unmodified	_DPITLFVAL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5713600724001	1	988.57136	987.564084	1.6486	0.0016298	-0.22677	-0.00022418	1.4218	0.0014056	988.571963810782	38.658	0.1682	38.662	38.59	38.758	0.0040245	198	67	1.5015416	0.039034843	1.5000222	304.91272	0	7.926697						198	8	2	NaN	NaN	NaN	0.056143	1	7980	7980		44.302	19.341	1	19362			2420	1039	1416	1438	1868	1868					0.06980412734139918
DPLGIEDSL	9	Unmodified	_DPLGIEDSL_					0	0	0		ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4727682398001	1	958.472768	957.465492	1.2293	0.0011782	-0.49514	-0.00047458	0.73416	0.00070367	958.472795109038	32.539	0.21717	32.539	32.49	32.707	0	312	67	1.433996	0.03918028	1.433996	291.32242	0	7.959656						305	10	4	NaN	NaN	NaN	0.043119	1	7267	7267		49.833	0	1	39681			2421	4473	1417	1439	1869	1869					-0.014942353015612753
DPLGIEDSL	9	Unmodified	_DPLGIEDSL_					0	0	0		ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4727682398001	1	958.472768	957.465492	1.1339	0.0010868	-0.63224	-0.00060598	0.5017	0.00048086	958.472166017942	32.055	0.28957	32.051	32.003	32.292	-0.0037613	294	124	1.4446791	0.072990656	1.4431597	293.49277	0	14.828369						577	13	4	NaN	NaN	NaN	0.025843	1	7131	7131		64.55	14.717	1	117870			2422	4473	1417	1439	1870	1870					-0.014942353015612753
DPLGYEIQL	9	Unmodified	_DPLGYEIQL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.5357028476	1	1047.5357	1046.52843	2.0899	0.0021892	-1.2955	-0.0013571	0.79434	0.0008321	1047.534507364385	30.511	0.16893	30.511	30.463	30.632	0	144	139	1.533442	0.081506014	1.533442	311.14902	0	16.5383						620	8	4	NaN	NaN	NaN	0.00016172	1	10483	10483		119.15	69.19	1	196240			2423	1813	1418	1440	1871	1871					0.007023304865015234
DPLGYEIQL	9	Unmodified	_DPLGYEIQL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2714896571001	2	524.27149	1046.52843	1.2684	0.000665	0.60302	0.00031614	1.8714	0.00098115	524.2718337628975	30.487	0.16893	30.487	30.463	30.632	0	1236	55	0.876284	0.033139646	0.876284	355.6072	0	13.448456						286	8	4	NaN	NaN	NaN	0.028349	1	10486	10486		61.271	18.954	1	63997			2424	1813	1418	1440	1872	1872					0.007023304865015234
DPLGYEIQL	9	Unmodified	_DPLGYEIQL_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5357028476	1	1047.5357	1046.52843	1.5164	0.0015885	-0.35261	-0.00036938	1.1638	0.0012191	1047.5352951173247	30.486	0.24131	30.48	30.408	30.649	-0.0057545	144	133	1.533442	0.077953935	1.5319226	311.14902	0	15.817566						689	11	4	NaN	NaN	NaN	0.0092442	1	10277	10277		93.929	46.793	1	194500			2425	1813	1418	1440	1873	1873					0.007023304865015234
DPLLTQPSHP	10	Unmodified	_DPLLTQPSHP_					0	0	0		ENST00000446533.7_2_15:41248228-41248366:+|nuORF	ENST00000446533.7_2_15:41248228-41248366:+|nuORF	ENST00000446533.7_2_15:41248228-41248366:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7878382130501	2	552.787838	1103.56112	1.428	0.00078936	-1.5454	-0.00085426	-0.1174	-6.4898E-05	552.7869640718645	19.564	0.14404	19.564	19.516	19.66	0	1248	79	0.8689189	0.047909796	0.8689189	352.3816	0	19.429352						188	7	3	NaN	NaN	NaN	0.47445	1	12993	12993		20.513	2.5436	1	24502			2426	7023	1419	1441	1874	1874					0.013485376093512969
DPLQAGAG	8	Unmodified	_DPLQAGAG_					0	0	0			REV__ENST00000596217.1_2_19:50411499-50411607:-|nuORF	REV__ENST00000596217.1_2_19:50411499-50411607:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.3573445515001	1	728.357345	727.350068	1.1689	0.00085138	4.0715	0.0029655	5.2404	0.0038169	728.3599352312086	31.596	0.072432	31.592	31.568	31.64	-0.0044174	1065	61	0.9808926	0.036572397	0.97937316	200.16443	0	7.463089						68	4	2	NaN	NaN	NaN	0.84207	1	3640	3640		3.5732	0.41988	1	4021.8	+		2427	12944	1420	1442	1875	1875					-0.024512946419008586
DPLSSSVS	8	Unmodified	_DPLSSSVS_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.3781395731002	1	791.37814	790.370863	1.5111	0.0011959	2.65	0.0020972	4.1611	0.003293	791.3797712370914	34.13	0.14484	34.129	34.08	34.225	-0.0012474	489	40	1.3285799	0.023296595	1.3270605	270.71466	0	4.7469788						86	7	2	NaN	NaN	NaN	0.84455	1	4542	4542		2.7852	1.1148	1	6711.9			2428	4023	1421	1443	1876	1876					-0.032707490528878225
DPMGCECS	8	Unmodified	_DPMGCECS_					0	0	0			REV__ENST00000367858.9_3_6:134490916-134491072:-|nuORF	REV__ENST00000367858.9_3_6:134490916-134491072:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.1298816475	2	421.129882	840.24521	1.3337	0.00056167	-0.15641	-6.5868E-05	1.1773	0.0004958	421.12981294008506	36.35	0.096428	36.35	36.326	36.422	0	1437	31	0.7524962	0.018542886	0.7524962	306.34406	0	7.548889						69	5	2	NaN	NaN	NaN	0.84727	1	5268	5268		1.2418	0	1	4853.3	+		2429	11866	1422	1444	1877	1877					-0.18130243496636922
DPMRLQKIRF	10	Unmodified	_DPMRLQKIRF_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.24829667953327	3	435.248297	1302.72306	1.3996	0.00060918	-1.8597	-0.00080944	-0.46011	-0.00020026	435.24756182139805	23.778	0.26505	23.778	23.682	23.947	0	1386	37	0.78399014	0.022210538	0.78399014	476.00513	0	13.485291						205	12	2	NaN	NaN	NaN	0.68699	1	18825	18825		8.9416	1.1377	1	50866			2430	4919	1423	1445	1878	1878					0.08380803090585687
DPNLEFVAM	9	Unmodified	_DPNLEFVAM_					0	0	0		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.24441762685	2	518.244418	1034.47428	1.3696	0.00070979	-2.9849	-0.0015469	-1.6153	-0.00083714	518.2428984340476	30.584	0.19309	30.584	30.511	30.704	0	1296	40	0.8394264	0.02398467	0.8394264	340.70145	0	9.734772						167	9	3	NaN	NaN	NaN	0.084037	1	9954	9954		38.131	20.096	1	12779			2431	2749	1424	1446	1879	1879					-0.04157584936751846
DPNLEFVAM	9	Unmodified	_DPNLEFVAM_					0	0	0		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.4815587870999	1	1035.48156	1034.47428	1.4557	0.0015073	0.16383	0.00016964	1.6195	0.001677	1035.482352611933	30.584	0.14483	30.584	30.487	30.632	0	195	76	1.5033154	0.044346094	1.5033154	305.08234	0	8.999573						363	7	3	NaN	NaN	NaN	0.012861	1	9955	9955		84.233	53.623	1	66200			2432	2749	1424	1446	1880	1880					-0.04157584936751846
DPNLEFVAM	9	Unmodified	_DPNLEFVAM_					0	0	0		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.24441762685	2	518.244418	1034.47428	0.99223	0.00051422	-3.1264	-0.0016202	-2.1342	-0.001106	518.243269142005	30.583	0.19304	30.577	30.456	30.649	-0.0057545	1296	40	0.8394264	0.02398467	0.83790696	340.70145	0	9.734772						158	9	3	NaN	NaN	NaN	0.19268	1	9748	9748		25.801	12.064	1	14816			2433	2749	1424	1446	1881	1881					-0.04157584936751846
DPNLEFVAM	9	Unmodified	_DPNLEFVAM_					0	0	0		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.4815587870999	1	1035.48156	1034.47428	1.0805	0.0011189	0.56625	0.00058634	1.6468	0.0017052	1035.482123955567	30.583	0.14476	30.577	30.48	30.625	-0.0057545	192	97	1.5050892	0.056747913	1.5035697	305.44226	0	11.516388						418	7	4	NaN	NaN	NaN	0.017558	1	9749	9749		75.089	41.664	1	67148			2434	2749	1424	1446	1882	1882					-0.04157584936751846
DPNLEFVAM	9	Oxidation (M)	_DPNLEFVAM(Oxidation (M))_		DPNLEFVAM(1)		DPNLEFVAM(170)	0	0	1		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.4764734091998	1	1051.47647	1050.4692	2.8103	0.002955	-1.2632	-0.0013282	1.5471	0.0016268	1051.4762486740628	25.926	0.26545	25.926	25.829	26.094	0	183	91	1.510409	0.053195596	1.510409	306.46045	0	10.793335						613	12	4	NaN	NaN	NaN	5.6786E-26	1	10639	10639		173.08	120.45	1	88274			2435	2749	1424	1447	1883	1883		318			-0.05401888799360677
DPNLEFVAM	9	Oxidation (M)	_DPNLEFVAM(Oxidation (M))_		DPNLEFVAM(1)		DPNLEFVAM(130)	0	0	1		ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENSG00000132341|ENST00000543796|RAN	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENST00000455094.1_1_6:30454046-30454364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.4764734091998	1	1051.47647	1050.4692	2.4541	0.0025805	-1.2846	-0.0013507	1.1696	0.0012298	1051.4755564237016	25.949	0.2655	25.938	25.817	26.083	-0.0116	180	103	1.5121819	0.06029463	1.5106624	306.8202	0	12.233734						553	12	3	NaN	NaN	NaN	2.212E-07	1	10418	10418		133.34	83.028	1	85963			2436	2749	1424	1447	1884	1884		318			-0.05401888799360677
DPNRDGHVSL	10	Unmodified	_DPNRDGHVSL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.27034395165	2	555.270344	1108.52613	1.6366	0.00090878	-1.0588	-0.0005879	0.57788	0.00032088	555.2697465192763	14.117	0.28825	14.117	14.069	14.357	0	1254	58	0.8652351	0.035001516	0.8652351	350.8683	0	14.193726						417	13	4	NaN	NaN	NaN	0.082901	1	13224	13224		48.319	17.709	1	80294			2437	5722	1425	1448	1885	1885					-0.02378705198634634
DPNRDGHVSL	10	Unmodified	_DPNRDGHVSL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.27034395165	2	555.270344	1108.52613	1.3752	0.00076361	-0.74198	-0.000412	0.63323	0.00035162	555.2701938054233	14.117	0.23955	14.106	14.082	14.322	-0.010672	1251	58	0.8670771	0.03500533	0.8655577	351.61523	0	14.195251						329	11	4	NaN	NaN	NaN	0.10301	1	12847	12847		45.55	19.435	1	64404			2438	5722	1425	1448	1886	1886					-0.02378705198634634
DPPKLELKI	9	Unmodified	_DPPKLELKI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.6350229616999	1	1052.63502	1051.62775	0.54255	0.0005711	-1.0459	-0.0011009	-0.50333	-0.00052983	1052.6352851457498	56.083	0.024036	56.082	56.082	56.106	-0.00056458	105	37	1.5564433	0.021219611	1.5549239	315.7963	0	4.3053894						40	2	2	NaN	NaN	NaN	0.63698	1	10489	10489		3.9685	1.1833	1	3197.7	+		2439	10114	1426	1449	1887	1887					0.10399773171229754
DPPPHPPP	8	Unmodified	_DPPPHPPP_					0	0	0			REV__GAS2L2|p.T337Pfs*25|1|0.38|ENSG00000270765|chr17:35747093-35747093|G/-|frameshift_variant	REV__GAS2L2|p.T337Pfs*25|1|0.38|ENSG00000270765|chr17:35747093-35747093|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4202791593001	1	853.420279	852.413003	1.8631	0.00159	-0.96381	-0.00082254	0.89926	0.00076745	853.4194945467331	22.26	0.12058	22.26	22.236	22.356	0	1236	64	0.876284	0.03865248	0.876284	178.33173	0	7.8661346						143	6	2	NaN	NaN	NaN	0.84876	1	5415	5415		0.39566	0	1	15486	+		2440	12996	1427	1450	1888	1888					-0.01910728853852106
DPPPSCCA	8	Unmodified	_DPPPSCCA_					0	0	0			REV__ENSG00000102755|ENST00000282397|FLT1	REV__ENSG00000102755|ENST00000282397|FLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.2905868941999	1	789.290587	788.28331	2.2156	0.0017488	4.563	0.0036015	6.7786	0.0053503	789.2932831058677	33.285	0.024124	33.283	33.259	33.283	-0.0024757	627	34	1.24593	0.019813776	1.2444105	253.88515	0	4.037491						37	2	2	NaN	NaN	NaN	0.84692	1	4509	4509		1.4396	0.19772	1	2112.3	+		2441	8889	1428	1451	1889	1889					-0.11929989519683204
DPQGIYVI	8	Unmodified	_DPQGIYVI_					0	0	0		ENSG00000090932|ENST00000356433|DLL3;nc|ENSG00000090932|Q9NYJ7|DLL3	ENSG00000090932|ENST00000356433|DLL3	ENSG00000090932|ENST00000356433|DLL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4774596871999	1	904.47746	903.470183	2.0053	0.0018138	-0.375	-0.00033918	1.6303	0.0014746	904.4768453965656	25.081	0.1689	25.081	25.057	25.226	0	354	112	1.4090419	0.06605196	1.4090419	286.49542	0	13.430115						358	8	3	NaN	NaN	NaN	0.202	1	6146	6146		49.833	5.1944	1	56580			2442	1068	1429	1452	1890	1890					0.014586936318437438
DPRNATSVCI	10	Carbamidomethyl (C)	_DPRNATSVC(Carbamidomethyl (C))I_	DPRNATSVC(1)I		DPRNATSVC(48)I		0	1	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7744048743	2	566.774405	1131.53426	3.0708	0.0017405	-1.3561	-0.00076858	1.7147	0.00097187	566.7732455932551	22.573	0.69906	22.573	22.477	23.176	0	1224	388	0.883646	0.2383399	0.883646	358.24475	0	96.62695						3171	30	6	NaN	NaN	NaN	0.085203	1	14134	14134		48.002	7.9963	1	8148000			2443	1362	1430	1453	1891	1891	0				-0.02624894273526479
DPSADPEL	8	Unmodified	_DPSADPEL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.3730541951999	1	843.373054	842.365778	1.8345	0.0015472	1.1488	0.00096889	2.9834	0.0025161	843.3740096702528	19.924	0.16836	19.924	19.876	20.045	0	486	40	1.3303722	0.023301601	1.3303722	270.794	0	4.742981						98	8	2	NaN	NaN	NaN	0.11172	1	5290	5290		61.977	20.517	1	6852.5			2444	7200	1431	1454	1892	1892					-0.06171052915533437
DPSADPEL	8	Unmodified	_DPSADPEL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.3730541951999	1	843.373054	842.365778	1.4966	0.0012622	0.18853	0.000159	1.6851	0.0014212	843.3737740800484	19.9	0.12032	19.885	19.861	19.982	-0.014141	483	43	1.3321642	0.02508998	1.3306447	271.15878	0	5.1069946						92	6	2	NaN	NaN	NaN	0.35353	1	5162	5162		38.918	5.2196	1	5613.9			2445	7200	1431	1454	1893	1893					-0.06171052915533437
DPSHHDIAL	9	Unmodified	_DPSHHDIAL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.7434307093999	2	502.743431	1003.47231	1.7131	0.00086123	-2.6483	-0.0013314	-0.93526	-0.0004702	502.7423925809659	16.038	0.11998	16.038	15.99	16.11	0	1296	40	0.8394264	0.023987234	0.8394264	340.83963	0	9.739746						107	6	2	NaN	NaN	NaN	0.12328	1	8715	8715		32.453	16.99	1	17250			2446	1534	1432	1455	1894	1894					-0.029288776303587838
DPSHHDIAL	9	Unmodified	_DPSHHDIAL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.7434307093999	2	502.743431	1003.47231	1.9113	0.0009609	-0.92638	-0.00046573	0.98493	0.00049517	502.74345967216624	16.035	0.11979	16.023	15.999	16.118	-0.012611	1299	40	0.8375814	0.02398467	0.83606195	340.0905	0	9.7387085						127	6	3	NaN	NaN	NaN	0.030669	1	8540	8540		58.235	29.34	1	19526			2447	1534	1432	1455	1895	1895					-0.029288776303587838
DPSSAQYII	9	Unmodified	_DPSSAQYII_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.488752655	1	993.488753	992.481476	1.4388	0.0014295	-1.5763	-0.001566	-0.13745	-0.00013655	993.490195051841	26.818	0.21722	26.808	26.735	26.952	-0.010645	252	97	1.4695803	0.056850433	1.4680609	298.4021	0	11.54364						375	10	3	NaN	NaN	NaN	0.13602	1	8141	8141		30.61	2.8213	1	59862	+		2448	9551	1433	1456	1896	1896					-0.015065290646703033
DPSSAQYII	9	Unmodified						0	0	0			REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	993.488753	992.481476	1.8741	0.0018619	-1.5881	-0.0015778	0.28601	0.00028414	993.4898953099237	26.795	0.26583	26.795	26.77	27.036	0	255	76	1.4678029	0.044445038	1.4678029	298.0412		9.024689	-0.0063293	-5.5082E-06	-0.00012899	NaN	30.61	301	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55403	+		2449	9551	1433	1456							-0.015065290646703033
DPSSAQYII	9	Unmodified						0	0	0			REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	993.488753	992.481476	1.4388	0.0014295	-1.5763	-0.001566	-0.13745	-0.00013655	993.490195051841	26.818	0.21722	26.808	26.735	26.952	-0.010645	252	97	1.4695803	0.056850433	1.4680609	298.4021		11.54364	0.0063293	6.2567E-06	0.00012899	NaN	30.61	375	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59862	+		2450	9551	1433	1456							-0.015065290646703033
DPTAVGPVL	9	Unmodified	_DPTAVGPVL_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4774596872002	1	868.47746	867.470183	2.2915	0.0019901	-4.174	-0.003625	-1.8825	-0.0016349	868.4725842347591	25.732	0.072393	25.721	25.696	25.769	-0.0116	462	40	1.3447032	0.02327931	1.3431838	273.5839	0	4.7362366						60	4	2	NaN	NaN	NaN	0.12945	1	5490	5490		31.561	17.519	1	4534.6			2451	3652	1434	1457	1897	1897					0.031146936318691587
DPTAVGPVL	9	Unmodified						0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	868.47746	867.470183	2.2764	0.001977	0.90015	0.00078176	3.1765	0.0027587	868.478126007106	25.708	0.048248	25.708	25.708	25.757	0	459	34	1.3464937	0.019695759	1.3464937	273.94815		4.007141	-0.0061289	0.0013621	0.001655	NaN	31.561	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3214			2452	3652	1434	1457							0.031146936318691587
DPTDEFFL	8	Unmodified	_DPTDEFFL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.435654452	1	983.435654	982.428378	1.3204	0.0012985	2.5398	0.0024977	3.8602	0.0037962	983.4364721474158	33.045	0.16895	33.045	32.997	33.166	0	261	61	1.4642475	0.035550356	1.4642475	297.3609	0	7.2196045						148	8	2	NaN	NaN	NaN	0.19946	1	7958	7958		50.033	25.072	1	13575			2453	4223	1435	1458	1898	1898					-0.06353906847334656
DPTDVAALR	9	Unmodified	_DPTDVAALR_					0	0	0		ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.25363125494994	2	479.253631	956.49271	2.266	0.001086	-3.126	-0.0014982	-0.86008	-0.0004122	479.25111751661166	18.266	0.11992	18.252	18.204	18.324	-0.01395	1326	61	0.8209676	0.036925495	0.81944823	333.56604	0	15.003143						110	6	2	NaN	NaN	NaN	0.13602	1	7112	7112		30.61	11.492	1	11094			2454	2481	1436	1459	1899	1899					0.012722930294671642
DPTDVAALR	9	Unmodified						0	0	0		ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	479.253631	956.49271	2.1208	0.0010164	-3.5056	-0.0016801	-1.3848	-0.00066365	479.2518160042594	18.245	0.11984	18.245	18.197	18.316	0	1323	76	0.8228144	0.046164393	0.8228144	334.3164		18.756989	-0.0035393	-0.00019808	0.0016831	NaN	30.61	169	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13935			2455	2481	1436	1459							0.012722930294671642
DPTLLAAVER	10	Unmodified	_DPTLLAAVER_					0	0	0		ENST00000339276.5_1_1:27190446-27190644:+|nuORF	ENST00000339276.5_1_1:27190446-27190644:+|nuORF	ENST00000339276.5_1_1:27190446-27190644:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.80348827725	2	542.803488	1083.59242	2.0141	0.0010933	-2.9093	-0.0015792	-0.8952	-0.00048592	542.8021584054744	23.176	0.265	23.176	23.007	23.272	0	1263	55	0.85970795	0.033168256	0.85970795	348.72543	0	13.454132						193	12	2	NaN	NaN	NaN	0.31086	1	12132	12132		27.296	0.33605	1	40516			2456	6540	1437	1460	1900	1900					0.053971106434119065
DPTLVDKDF	9	Unmodified	_DPTLVDKDF_					0	0	0		ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.26112193605	2	525.261122	1048.50769	1.1805	0.00062006	-2.4231	-0.0012727	-1.2426	-0.00065268	525.2612049952934	24.502	0.096525	24.489	24.441	24.537	-0.012747	1236	67	0.876284	0.040521502	0.8747646	355.59848	0	16.443756						112	5	2	NaN	NaN	NaN	0.35794	1	10346	10346		15.463	0	1	13583			2457	4326	1438	1461	1901	1901					-0.014622598931964603
DPTPLTWSKCS	11	Unmodified	_DPTPLTWSKCS_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.7922632764501	2	617.792263	1233.56997	1.2056	0.00074482	4.512	0.0027875	5.7177	0.0035323	617.7954033113966	23.127	0.1929	23.114	23.065	23.258	-0.013296	1179	55	0.9112251	0.033064544	0.90970564	369.05768	0	13.391541						205	9	2	NaN	NaN	NaN	0.54514	1	16637	16637		16.858	1.0364	1	52170			2458	8	1439	1462	1902	1902					-0.03746856816496802
DPTRRELSL	9	Unmodified	_DPTRRELSL_					0	0	0		SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant;ENSG00000244486|ENST00000622235|SCARF2	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7987372503501	2	543.798737	1085.58292	1.5443	0.00083979	-2.2861	-0.0012432	-0.74183	-0.0004034	544.2985076237791	22.453	0.048082	22.453	22.429	22.477	0	1266	97	0.85786515	0.058934033	0.85786515	347.9699	0	23.904999						128	3	3	NaN	NaN	NaN	0.54912	1	12209	12209		7.5876	0	1	9662.8			2459	6093	1440	1463	1903	1903					0.043553423578941874
DPTTDDPAL	9	Unmodified	_DPTTDDPAL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4207326693	1	944.420733	943.413456	1.9447	0.0018366	0.31529	0.00029776	2.2599	0.0021343	944.4212591982911	20.598	0.072271	20.584	20.559	20.632	-0.014088	360	40	1.405474	0.023197532	1.4039545	285.58838	0	4.713684						56	4	2	NaN	NaN	NaN	0.089764	1	6760	6760		37.302	9.5135	1	3874.8			2460	5278	1441	1464	1904	1904					-0.0605139871532856
DPVGEPYYML	10	Unmodified	_DPVGEPYYML_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.27063237735	2	592.270632	1182.52671	1.5746	0.00093257	-2.3977	-0.0014201	-0.82312	-0.00048751	592.2685092331196	21.609	0.096386	21.609	21.585	21.681	0	1137	34	0.9369253	0.020183206	0.9369253	379.64783	0	8.178375						54	5	2	NaN	NaN	NaN	0.75966	1	15905	15905		3.9685	0	1	3757	+		2461	8783	1442	1465	1905	1905					-0.057250465937841
DPVGEPYYML	10	Unmodified						0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.270632	1182.52671	1.5746	0.00093257	-2.3977	-0.0014201	-0.82312	-0.00048751	592.2685092331196	21.609	0.096386	21.609	21.585	21.681	0	1137	34	0.9369253	0.020183206	0.9369253	379.64783		8.178375	0.0068572	0.0003672	0.0016769	NaN	3.9685	54	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3757	+		2462	8783	1442	1465							-0.057250465937841
DPVGEPYYML	10	Unmodified						0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.270632	1182.52671	1.7872	0.0010585	-3.1372	-0.001858	-1.35	-0.00079955	592.2678242310805	21.609	0.072168	21.595	21.571	21.643	-0.013897	1140	31	0.93509084	0.018347383	0.9335714	378.90448		7.4344788	-0.0068572	-0.00050874	-0.0016769	NaN	3.9685	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3554.6	+		2463	8783	1442	1465							-0.057250465937841
DPVSGHCA	8	Unmodified	_DPVSGHCA_					0	0	0		ENSG00000162591|ENST00000356575|MEGF6	ENSG00000162591|ENST00000356575|MEGF6	ENSG00000162591|ENST00000356575|MEGF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3246642145999	1	785.324664	784.317388	1.0146	0.00079676	-8.9966	-0.0070653	-7.9821	-0.0062685	785.317958547664	39.863	0.21667	39.863	39.839	40.056	0	618	91	1.2513325	0.054057837	1.2513325	255.00818	0	11.016434						276	10	2	NaN	NaN	NaN	0.84207	1	4553	4553		3.5732	0.41988	1	25439			2464	4148	1443	1466	1906	1906					-0.08339825036421189
DPWFYKGTTY	10	Unmodified	_DPWFYKGTTY_					0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.2954960696501	2	639.295496	1276.57644	2.2626	0.0014465	-12.223	-0.0078138	-9.96	-0.0063674	639.2861786317443	23.416	0.16893	23.403	23.355	23.524	-0.013294	1131	46	0.94059354	0.027510703	0.93907416	380.81027	0	11.138031						154	8	3	NaN	NaN	NaN	0.71559	1	17532	17532		6.9844	1.7955	1	15821			2465	7317	1444	1467	1907	1907					-0.050785955934770755
DPWFYKGTTY	10	Unmodified						0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.295496	1276.57644	2.0649	0.0013201	-6.4557	-0.0041271	-4.3907	-0.002807	639.2911502024622	23.345	0.072342	23.345	23.296	23.369	0	1134	73	0.9387595	0.04404801	0.9387595	380.06772		17.833344	-0.02928	0.0031505	-0.0001573	NaN	6.9844	100	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10202			2466	7317	1444	1467							-0.050785955934770755
DPWQGRAV	8	Unmodified	_DPWQGRAV_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4635409575001	1	928.463541	927.456264	2.1583	0.0020039	-10.437	-0.0096903	-8.2786	-0.0076864	928.4535477666022	22.573	0.24124	22.573	22.549	22.79	0	1221	133	0.885486	0.08099055	0.885486	179.97284	0	16.461136						452	11	3	NaN	NaN	NaN	0.84455	1	6535	6535		2.7852	0.32367	1	46444	+		2467	10398	1445	1468	1908	1908					-0.010365390765741722
DPWQGRAV	8	Unmodified						0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	928.463541	927.456264	2.1583	0.0020039	-10.437	-0.0096903	-8.2786	-0.0076864	928.4535477666022	22.573	0.24124	22.573	22.549	22.79	0	1221	133	0.885486	0.08099055	0.885486	179.97284		16.461136	-0.017074	-0.00045563	0.0016797	NaN	2.7852	452	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46444	+		2468	10398	1445	1468							-0.010365390765741722
DPWQGRAV	8	Unmodified						0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	928.463541	927.456264	1.0543	0.0009789	-9.4479	-0.008772	-8.3936	-0.0077931	928.4545625113864	22.621	0.2652	22.607	22.559	22.824	-0.01354	1224	124	0.883646	0.07546437	0.88212657	179.59886		15.337952	0.017074	0.00046263	-0.0016797	NaN	2.7852	517	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52882	+		2469	10398	1445	1468							-0.010365390765741722
DPYSGLGL	8	Unmodified	_DPYSGLGL_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4039603931002	1	821.40396	820.396684	1.8638	0.001531	0.3408	0.00027993	2.2046	0.0018109	821.4042655769763	22.886	0.12063	22.872	22.848	22.969	-0.01354	495	49	1.3249949	0.028683543	1.3234755	269.8154	0	5.840973						86	6	2	NaN	NaN	NaN	0.67593	1	4913	4913		20.555	2.7751	1	5949.7	+		2470	10208	1446	1469	1909	1909					-0.02069854810599736
DPYSGLGL	8	Unmodified						0	0	0			REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.40396	820.396684	2.2891	0.0018803	-1.0803	-0.00088733	1.2089	0.00099297	821.4026566573544	22.887	0.1206	22.887	22.838	22.959	0	498	46	1.3232021	0.026892185	1.3232021	269.45035		5.476166	0.0071618	-0.0007264	-0.00013669	NaN	20.555	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5302.3	+		2471	10208	1446	1469							-0.02069854810599736
DPYSGLGL	8	Unmodified						0	0	0			REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.40396	820.396684	1.8638	0.001531	0.3408	0.00027993	2.2046	0.0018109	821.4042655769763	22.886	0.12063	22.872	22.848	22.969	-0.01354	495	49	1.3249949	0.028683543	1.3234755	269.8154		5.840973	-0.0071618	0.00044086	0.00013669	NaN	20.555	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5949.7	+		2472	10208	1446	1469							-0.02069854810599736
DQAADAHG	8	Unmodified	_DQAADAHG_					0	0	0			REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1	REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.3220216776999	1	784.322022	783.314745	1.6674	0.0013078	-3.5579	-0.0027905	-1.8905	-0.0014827	784.3208613162362	40.318	0.024017	40.325	40.325	40.349	0.0067596	678	97	1.2152823	0.05768025	1.213763	247.66698	0	11.754883						61	2	2	NaN	NaN	NaN	0.84897	1	4452	4452		0.27539	0	1	4993.4	+		2473	8980	1447	1470	1910	1910					-0.08557957169716701
DQCPEECVMFE	11	Unmodified	_DQCPEECVMFE_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.2434313488499	2	665.243431	1328.47231	1.3998	0.00093121	-5.4503	-0.0036258	-4.0505	-0.0026946	665.2406642835064	24.261	0.14483	24.261	24.188	24.333	0	1128	61	0.9424274	0.036674976	0.9424274	381.39313	0	14.842072						187	7	3	NaN	NaN	NaN	0.71564	1	19233	19233		6.4299	1.7009	1	23508			2474	5440	1448	1471	1911	1911					-0.17878749799206162
DQEVCEEGWN	10	Unmodified	_DQEVCEEGWN_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.48899881213333	3	403.488999	1207.44517	0.52494	0.00021181	6.0586	0.0024446	6.5835	0.0026564	403.491529668222	30.97	0.14486	30.97	30.946	31.091	0	1461	67	0.7376554	0.04084766	0.7376554	448.2427	0	24.821411						184	7	2	NaN	NaN	NaN	0.72792	1	16656	16656		6.1406	1.1237	1	22942			2475	3968	1449	1472	1912	1912					-0.1502577402368388
DQFEALTV	8	Unmodified	_DQFEALTV_					0	0	0			REV__ENSG00000105519|ENST00000588776|CAPS	REV__ENSG00000105519|ENST00000588776|CAPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.4516388672	1	922.451639	921.444362	2.1533	0.0019863	-2.3306	-0.0021499	-0.17736	-0.00016361	922.4491189559106	26.07	0.072418	26.07	26.046	26.119	0	318	61	1.4304334	0.035626054	1.4304334	290.75977	0	7.241577						93	4	2	NaN	NaN	NaN	0.78967	1	6431	6431		10.605	1.4818	1	9912.3	+		2476	8960	1450	1473	1913	1913					-0.01950200610428965
DQFEAWSPEFV	11	Unmodified	_DQFEAWSPEFV_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.80114255355	2	677.801143	1353.58773	1.2445	0.00084351	0.4582	0.00031057	1.7027	0.0011541	677.8024486441312	27.277	0.19306	27.277	27.205	27.398	0	1104	94	0.9570911	0.056781888	0.9570911	387.2534	0	22.974823						305	9	3	NaN	NaN	NaN	0.6011	1	19584	19584		13.949	5.6712	1	33195	+		2477	8411	1451	1474	1914	1914					-0.07491818290009178
DQFEAWSPEFV	11	Unmodified	_DQFEAWSPEFV_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.80114255355	2	677.801143	1353.58773	0.89565	0.00060707	1.5093	0.001023	2.4049	0.0016301	677.8013270474326	27.301	0.16893	27.291	27.218	27.387	-0.010126	1104	82	0.9570911	0.049455225	0.95557165	387.2534	0	20.010345						271	8	3	NaN	NaN	NaN	0.54514	1	18706	18706		16.858	3.3953	1	30583	+		2478	8411	1451	1474	1915	1915					-0.07491818290009178
DQFEAWSPEFV	11	Unmodified						0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	677.801143	1353.58773	1.2445	0.00084351	0.4582	0.00031057	1.7027	0.0011541	677.8024486441312	27.277	0.19306	27.277	27.205	27.398	0	1104	94	0.9570911	0.056781888	0.9570911	387.2534		22.974823	-0.0066336	-0.00077244	0.00075972	NaN	16.858	305	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33195	+		2479	8411	1451	1474							-0.07491818290009178
DQFEAWSPEFV	11	Unmodified						0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.801143	1353.58773	0.89565	0.00060707	1.5093	0.001023	2.4049	0.0016301	677.8013270474326	27.301	0.16893	27.291	27.218	27.387	-0.010126	1104	82	0.9570911	0.049455225	0.95557165	387.2534		20.010345	0.0066336	0.00065241	-0.00075972	NaN	16.858	271	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30583	+		2480	8411	1451	1474							-0.07491818290009178
DQFIPLSCSGF	11	Unmodified	_DQFIPLSCSGF_					0	0	0		ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2815314146501	2	607.281531	1212.54851	0.98548	0.00059847	7.5635	0.0045932	8.549	0.0051916	607.2865299562583	20.814	0.048134	20.814	20.79	20.838	0	1188	64	0.90571284	0.03859818	0.90571284	366.8955	0	15.635742						101	3	2	NaN	NaN	NaN	0.6875	1	16782	16782		8.2775	1.4143	1	15912			2481	5016	1452	1475	1916	1916					-0.04926241845214463
DQHLGPHLAL	10	Unmodified	_DQHLGPHLAL_					0	0	0			REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.79599759615	2	550.795998	1099.57744	1.9589	0.0010789	-1.4834	-0.00081704	0.47549	0.0002619	550.7952608534806	17.354	0.33597	17.34	17.196	17.532	-0.013569	1245	61	0.87076044	0.036837757	0.869241	353.1442	0	14.93985						515	15	5	NaN	NaN	NaN	0.032813	1	12503	12503		58.398	8.0827	1	166030	+		2482	11649	1453	1476	1917	1917					0.031636635660561296
DQHLGPHLAL	10	Unmodified						0	0	0			REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.795998	1099.57744	1.9589	0.0010789	-1.4834	-0.00081704	0.47549	0.0002619	550.7952608534806	17.354	0.33597	17.34	17.196	17.532	-0.013569	1245	61	0.87076044	0.036837757	0.869241	353.1442		14.93985	0.099437	4.2619E-05	-0.002601	NaN	58.398	515	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166030	+		2483	11649	1453	1476							0.031636635660561296
DQHLQTLI	8	Unmodified	_DQHLQTLI_					0	0	0			REV__ENST00000548982.1_1_12:56717776-56718181:-|nuORF	REV__ENST00000548982.1_1_12:56717776-56718181:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.263998976	2	484.263999	966.513445	1.4513	0.00070281	-1.8176	-0.0008802	-0.36631	-0.00017739	484.26265225250984	21.031	0.12041	21.017	20.969	21.089	-0.014086	1302	64	0.8357362	0.038761258	0.8342168	339.51675	0	15.746735						126	6	3	NaN	NaN	NaN	0.72013	1	7378	7378		17.799	0.018654	1	11545	+		2484	9620	1454	1477	1918	1918					0.028848834091377284
DQLIPESHL	9	Unmodified	_DQLIPESHL_					0	0	0			REV__ENST00000587057.5_1_19:617276-617745:-|nuORF	REV__ENST00000587057.5_1_19:617276-617745:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2745636623	2	526.274564	1050.53457	1.6359	0.00086092	-2.1081	-0.0011095	-0.47226	-0.00024854	526.273851488692	22.549	0.12059	22.549	22.525	22.645	0	1266	82	0.85786515	0.049765885	0.85786515	348.11536	0	20.194641						230	6	3	NaN	NaN	NaN	0.23112	1	10649	10649		23.334	0.21685	1	37019	+		2485	8776	1455	1478	1919	1919					0.011328487179980584
DQLLVLLAS	9	Unmodified	_DQLLVLLAS_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5771737318	1	971.577174	970.569897	1.3464	0.0013082	0.15772	0.00015324	1.5041	0.0014614	971.5773623179506	29.786	0.072365	29.779	29.755	29.828	-0.0070648	204	49	1.4979934	0.028392076	1.496474	304.2655	0	5.7668457						71	4	2	NaN	NaN	NaN	0.61852	1	7492	7492		4.7291	0	1	6693.1	+		2486	10721	1456	1479	1920	1920					0.08343511245800528
DQMRALNKRD	10	Unmodified	_DQMRALNKRD_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.21554418566666	3	416.215544	1245.6248	1.5021	0.00062521	3.6691	0.0015272	5.1713	0.0021524	416.2172036282241	15.27	0.1201	15.27	15.246	15.366	0	1503	52	0.711653	0.031593204	0.711653	432.29257	0	19.191254						117	6	3	NaN	NaN	NaN	0.41164	1	17656	17656		14.45	0	1	12381	+		2487	8635	1457	1480	1921	1921					0.01181574774773253
DQNLDTKWYQW	11	Unmodified	_DQNLDTKWYQW_					0	0	0		ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.8438730355	2	748.843873	1495.67319	1.4606	0.0010937	0.54125	0.00040531	2.0018	0.0014991	748.8435752829879	23.947	0.12063	23.947	23.923	24.044	0	960	37	1.0448081	0.02187264	1.0448081	422.33884	0	8.841492						118	6	3	NaN	NaN	NaN	0.62211	1	20565	20565		12.57	2.9581	1	10022			2488	3060	1458	1481	1922	1922					-0.05481653104357065
DQPIELIII	9	Unmodified	_DQPIELIII_					0	0	0			REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF	REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3131575065502	2	527.313158	1052.61176	0.72069	0.00038003	-1.6375	-0.00086346	-0.91677	-0.00048343	527.3122518306607	35.361	0.19297	35.361	35.313	35.506	0	1248	85	0.8689189	0.051578403	0.8689189	352.59186	0	20.929596						289	9	3	NaN	NaN	NaN	0.084037	1	10763	10763		38.131	1.5444	1	35953	+		2489	11997	1459	1482	1923	1923					0.08756066934347473
DQQNSHPDLAQ	11	Unmodified	_DQQNSHPDLAQ_					0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.7812727787001	2	626.781273	1251.54799	1.3668	0.00085669	-1.4744	-0.00092414	-0.10762	-6.7453E-05	626.7812367555466	23.875	0.14461	23.861	23.789	23.934	-0.013048	1155	46	0.92591566	0.027534425	0.9243962	374.94794	0	11.150024						128	7	3	NaN	NaN	NaN	0.75376	1	17050	17050		3.9281	0	1	11166			2490	4948	1460	1483	1924	1924					-0.0677194524071183
DQQNSHPDLAQ	11	Unmodified						0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.781273	1251.54799	1.547	0.0009696	0.47421	0.00029723	2.0212	0.0012668	626.78246928756	23.899	0.12048	23.899	23.827	23.947	0	1152	46	0.92775106	0.027531445	0.92775106	375.6912		11.148804	0.018686	0.0012463	0.0016774	NaN	3.9281	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12947			2491	4948	1460	1483							-0.0677194524071183
DQQVSWPVL	9	Unmodified	_DQQVSWPVL_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.27710635125	2	536.277106	1070.53966	2.1372	0.0011461	-4.1238	-0.0022115	-1.9865	-0.0010653	536.2761845034978	21.778	0.21672	21.778	21.657	21.874	0	1266	103	0.85786515	0.06265801	0.85786515	348.0312	0	25.420013						443	10	4	NaN	NaN	NaN	0.13602	1	11582	11582		30.61	0.90391	1	89362	+		2492	8356	1461	1484	1925	1925					0.007211525806042118
DQSKEPNQ	8	Unmodified	_DQSKEPNQ_					0	0	0			REV__ENSG00000212993|ENST00000696633|POU5F1B	REV__ENSG00000212993|ENST00000696633|POU5F1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.4272150307	1	945.427215	944.419939	2.1953	0.0020755	-0.38923	-0.00036799	1.806	0.0017075	945.4292314585225	26.07	0.21723	26.07	25.974	26.191	0	333	151	1.4215236	0.089169264	1.4215236	288.84518	0	18.118683						451	10	4	NaN	NaN	NaN	0.43738	1	6924	6924		34.439	4.8405	1	65936	+		2493	11280	1462	1485	1926	1926					-0.054494607639526293
DQWNQNFNTI	10	Unmodified	_DQWNQNFNTI_					0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.2887336700501	2	640.288734	1278.56291	2.1677	0.0013879	-10.235	-0.0065535	-8.0676	-0.0051656	640.2827652958669	25.201	0.16887	25.189	25.141	25.31	-0.012011	1152	70	0.92775106	0.0422104	0.9262317	375.6046	0	17.08908						338	8	4	NaN	NaN	NaN	0.50283	1	17567	17567		19.336	2.4781	1	47038	+		2494	9648	1463	1486	1927	1927					-0.06522453372713244
DQYWLKIYLF	10	Unmodified	_DQYWLKIYLF_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.86608853405	2	694.866089	1387.71762	0.96436	0.0006701	-7.7926	-0.0054148	-6.8283	-0.0047447	694.8610025453737	32.008	0.096554	32.008	31.959	32.056	0	1050	58	0.9900381	0.03474933	0.9900381	400.48468	0	14.05661						153	5	3	NaN	NaN	NaN	0.58645	1	19964	19964		15.822	0	1	18790			2495	6058	1464	1487	1928	1928					0.03927402779800104
DRDRHRERER	10	Unmodified	_DRDRHRERER_					0	0	0			REV__nc|ENSG00000111605|Q16630-3|CPSF6	REV__nc|ENSG00000111605|Q16630-3|CPSF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.8643284394	2	712.864328	1423.7141	1.3199	0.00094089	-8.3914	-0.0059819	-7.0715	-0.005041	712.8602833248532	26.577	0.12068	26.577	26.529	26.65	0	1050	70	0.9900381	0.042042315	0.9900381	400.3848	0	17.002502						226	6	4	NaN	NaN	NaN	0.72369	1	20241	20241		6.4299	0.73577	1	19311	+		2496	9098	1465	1488	1929	1929					0.01919545778491738
DREDLFAEA	9	Unmodified	_DREDLFAEA_					0	0	0		ENST00000505854.5_1_5:122110798-122139331:+|nuORF;ENSG00000205302|ENST00000379516|SNX2	ENST00000505854.5_1_5:122110798-122139331:+|nuORF	ENST00000505854.5_1_5:122110798-122139331:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4847299095998	1	1065.48473	1064.47745	1.2334	0.0013141	8.4596	0.0090136	9.693	0.010328	1065.4946514249561	37.431	0.072098	37.434	37.41	37.482	0.0028229	117	40	1.5493695	0.022996426	1.54785	314.31183	0	4.665161						81	4	2	NaN	NaN	NaN	0.40649	1	11055	11055		13.463	3.1029	1	6677.9			2497	5921	1466	1489	1930	1930					-0.05220618558382739
DREKLLEAWM	10	Unmodified	_DREKLLEAWM_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.88854555486665	3	430.888546	1289.64381	1.894	0.00081608	7.1167	0.0030665	9.0107	0.0038826	430.8917132555545	18.652	0.095919	18.652	18.628	18.724	0	1419	43	0.76361835	0.02594322	0.76361835	463.68546	0	15.753265						124	5	3	NaN	NaN	NaN	0.65442	1	18591	18591		8.9416	0	1	12495			2498	295	1467	1490	1931	1931					0.010571113458127002
DRGENLYYE	9	Unmodified	_DRGENLYYE_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7567350498999	2	579.756735	1157.49892	1.6912	0.00098046	-11.548	-0.0066949	-9.8566	-0.0057144	579.7493497100119	28.774	0.072399	28.774	28.701	28.774	0	1215	70	0.8891654	0.042310774	0.8891654	360.38507	0	17.148865						166	4	3	NaN	NaN	NaN	0.21199	1	15055	15055		24.562	2.727	1	25239			2499	309	1468	1491	1932	1932					-0.0735323352969317
DRGLCRDCTF	10	Unmodified	_DRGLCRDCTF_					0	0	0			REV__ENST00000487651.5_1_7:100456676-100456913:+|nuORF	REV__ENST00000487651.5_1_7:100456676-100456913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.2606073948	2	593.260607	1184.50666	1.1386	0.00067548	-3.3198	-0.0019695	-2.1812	-0.001294	593.2606386270338	28.049	0.21717	28.04	27.968	28.185	-0.0089779	1230	109	0.8799654	0.0661934	0.878446	356.56046	0	26.821472						772	10	5	NaN	NaN	NaN	0.60686	1	15379	15379		14.425	0	1	278150	+		2500	12434	1469	1492	1933	1933					-0.07821120805397186
DRGSRGWK	8	Unmodified	_DRGSRGWK_					0	0	0			REV__ENSG00000134339|ENST00000256733|SAA2	REV__ENSG00000134339|ENST00000256733|SAA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.4962380694001	1	961.496238	960.488962	1.5804	0.0015195	7.3264	0.0070443	8.9068	0.0085638	961.5036536416336	27.253	0.072399	27.242	27.218	27.291	-0.010126	246	43	1.4731345	0.024879932	1.4716152	299.26022	0	5.0542297						66	4	2	NaN	NaN	NaN	0.84562	1	7202	7202		2.1763	0.2517	1	5211.7	+		2501	9586	1470	1493	1934	1934					0.007136680462735967
DRIYLINSW	9	Unmodified	_DRIYLINSW_					0	0	0		nc|ENSG00000154803|Q8NFG4-2|FLCN;FLCN|p.N372Efs*18|1|0.21|ENSG00000154803|chr17:17217131-17217132|-/C|frameshift_variant;ENSG00000154803|ENST00000285071|FLCN	nc|ENSG00000154803|Q8NFG4-2|FLCN	nc|ENSG00000154803|Q8NFG4-2|FLCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.31148048485	2	590.31148	1178.60841	1.1178	0.00065984	0.25182	0.00014865	1.3696	0.00080849	590.8126235593028	30.124	0.072374	30.118	30.07	30.142	-0.0064106	1125	76	0.9442611	0.0458709	0.94274163	382.63498	0	18.58789						71	4	2	NaN	NaN	NaN	0.35794	1	15209	15209		15.463	0	1	5456.2			2502	3857	1471	1494	1935	1935					0.026248168803022054
DRLECGLL	8	Unmodified	_DRLECGLL_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4713284518001	1	918.471328	917.464052	1.8968	0.0017422	2.808	0.002579	4.7048	0.0043212	918.4729176402516	25.443	0.096512	25.431	25.407	25.503	-0.012011	339	58	1.4179583	0.033878922	1.4164388	288.24237	0	6.8868713						111	5	2	NaN	NaN	NaN	0.81251	1	6234	6234		7.5404	0.67717	1	12633	+		2503	9127	1472	1495	1936	1936					0.0020185212869137104
DRMFLPYII	9	Unmodified	_DRMFLPYII_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3151772667501	2	584.315177	1166.6158	0.94225	0.00055057	-9.009	-0.0052641	-8.0668	-0.0047135	584.3101994304423	35.263	0.2413	35.263	35.167	35.408	-4.5776E-05	1164	94	0.9204082	0.056972206	0.91888875	373.01367	0	23.089111						361	11	3	NaN	NaN	NaN	0.41766	1	14834	14834		13.003	0.41496	1	32361	+		2504	10170	1473	1496	1937	1937					0.039158331563839965
DRMFYNEVI	9	Unmodified	_DRMFYNEVI_					0	0	0			REV__ENSG00000130726|ENST00000253024|TRIM28	REV__ENSG00000130726|ENST00000253024|TRIM28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.7816985901501	2	593.781699	1185.54884	1.3003	0.00077209	-0.060807	-3.6106E-05	1.2395	0.00073598	593.7824031129546	22.91	0.24105	22.896	22.704	22.945	-0.01354	1200	109	0.89836043	0.06613624	0.896841	364.01038	0	26.798035						549	11	6	NaN	NaN	NaN	0.41766	1	15411	15411		13.003	0	1	137310	+		2505	9493	1474	1497	1938	1938					-0.036508221253598094
DRPRSPDP	8	Unmodified	_DRPRSPDP_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.2357728528	2	470.235773	938.456993	0.99764	0.00046913	5.4027	0.0025406	6.4004	0.0030097	470.2386323690083	43.609	0.023991	43.609	43.609	43.633	0	1422	52	0.7617651	0.03149396	0.7617651	309.5958	0	12.799744						56	2	2	NaN	NaN	NaN	0.84455	1	6785	6785		2.7852	0.32367	1	3595.6			2506	4883	1475	1498	1939	1939					-0.014697444275270755
DRQAPDLKG	9	Unmodified	_DRQAPDLKG_					0	0	0			REV__ENST00000578258.5_1_17:15604467-15614659:+|nuORF	REV__ENST00000578258.5_1_17:15604467-15614659:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5217841179	1	999.521784	998.514508	1.85	0.0018491	-0.95946	-0.000959	0.89057	0.00089014	999.5215488176049	24.96	0.19305	24.96	24.864	25.057	0	252	79	1.4695803	0.04620564	1.4695803	298.3774	0	9.381378						197	9	2	NaN	NaN	NaN	0.31737	1	8525	8525		17.799	1.3823	1	20977	+		2507	11028	1476	1499	1940	1940					0.015190977780321191
DRSMHPPMA	9	Unmodified	_DRSMHPPMA_					0	0	0			REV__ENST00000575094.5_1_12:9800972-9801086:+|nuORF	REV__ENST00000575094.5_1_12:9800972-9801086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2338613280501	2	521.233861	1040.45317	1.366	0.00071202	-0.51272	-0.00026725	0.85332	0.00044478	521.2336182058478	13.589	0.11988	13.579	13.555	13.675	-0.010098	1290	52	0.84311575	0.03136462	0.8415963	342.17303	0	12.729126						98	6	2	NaN	NaN	NaN	0.54912	1	10000	10000		7.5876	0	1	11083	+		2508	12844	1477	1500	1941	1941					-0.06543873517239263
DRSMHPPMA	9	Unmodified						0	0	0			REV__ENST00000575094.5_1_12:9800972-9801086:+|nuORF	REV__ENST00000575094.5_1_12:9800972-9801086:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.233861	1040.45317	1.366	0.00071202	-0.51272	-0.00026725	0.85332	0.00044478	521.2336182058478	13.589	0.11988	13.579	13.555	13.675	-0.010098	1290	52	0.84311575	0.03136462	0.8415963	342.17303		12.729126	-0.016747	-0.00061915	0.00016257	NaN	7.5876	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11083	+		2509	12844	1477	1500							-0.06543873517239263
DRVWANVGKS	10	Unmodified	_DRVWANVGKS_					0	0	0		ENST00000512630.5_1_4:143007384-143094853:-|nuORF;ENSG00000109452|ENST00000262992|INPP4B	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2989044258501	2	566.298904	1130.58326	2.1371	0.0012102	-9.2266	-0.005225	-7.0895	-0.0040148	566.2937105245235	23.441	0.14475	23.441	23.393	23.538	0	1239	88	0.87444305	0.053354144	0.87444305	354.51733	0	21.63086						229	7	3	NaN	NaN	NaN	0.58645	1	14105	14105		15.822	4.6516	1	37906			2510	1722	1478	1501	1942	1942					0.023187620777662232
DRVWANVGKS	10	Unmodified						0	0	0		ENST00000512630.5_1_4:143007384-143094853:-|nuORF;ENSG00000109452|ENST00000262992|INPP4B	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENST00000512630.5_1_4:143007384-143094853:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.298904	1130.58326	1.7575	0.00099528	-9.1909	-0.0052048	-7.4334	-0.0042095	566.2936900266277	23.465	0.19301	23.451	23.427	23.62	-0.013294	1239	85	0.87444305	0.051505983	0.8729236	354.51733		20.881592	0.0051926	1.6225E-05	-0.00075972	NaN	15.822	232	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40990			2511	1722	1478	1501							0.023187620777662232
DRVYTKNYHIL	11	Unmodified	_DRVYTKNYHIL_					0	0	0			REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3804257173001	2	711.380426	1420.7463	0.69536	0.00049467	-5.4608	-0.0038847	-4.7654	-0.00339	711.3765154073242	32.417	0.14479	32.414	32.317	32.462	-0.0031052	1068	43	0.97906286	0.025611699	0.9775434	395.9542	0	10.35791						124	7	2	NaN	NaN	NaN	0.57257	1	19263	19263		15.822	2.3589	1	11950	+		2512	9896	1479	1502	1943	1943					0.052755204089407925
DRYHEVQEQF	10	Unmodified	_DRYHEVQEQF_					0	0	0			REV__nc|ENSG00000163714|O15042-3|U2SURP	REV__nc|ENSG00000163714|O15042-3|U2SURP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.8739525315	3	450.873953	1349.60003	0.82084	0.0003701	-0.56359	-0.00025411	0.25726	0.00011599	451.20815941177773	20.862	0.19268	20.862	20.79	20.983	0	1437	40	0.7524962	0.024107158	0.7524962	456.71704	0	14.63147						179	9	4	NaN	NaN	NaN	0.72369	1	19539	19539		3.3044	0	1	18934	+		2513	10295	1480	1503	1944	1944					-0.060787818269545824
DRYPARHQPHM	11	Unmodified	_DRYPARHQPHM_					0	0	0		GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.8948050155999	3	469.894805	1406.66259	1.3523	0.00063542	-4.7044	-0.0022106	-3.3522	-0.0015752	469.89339299866845	15.534	0.12005	15.534	15.534	15.654	0	1377	28	0.7895419	0.016655207	0.7895419	479.0046	0	10.104492						52	6	2	NaN	NaN	NaN	0.76488	1	20116	20116		0.9877	0.10307	1	4213.3			2514	7810	1481	1504	1945	1945					-0.02447914239792226
DRYPARHQPHM	11	Unmodified	_DRYPARHQPHM_					0	0	0		GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.8948050155999	3	469.894805	1406.66259	1.3089	0.00061503	-2.4837	-0.0011671	-1.1748	-0.00055204	470.22808432116835	15.486	0.0721	15.486	15.438	15.51	0	1392	43	0.780288	0.02592355	0.780288	473.39038	0	15.727478						52	4	2	NaN	NaN	NaN	0.76488	1	20117	20117		0.9877	0.10307	1	4964.1			2515	7810	1481	1504	1946	1946					-0.02447914239792226
DRYPARHQPHM	11	Unmodified						0	0	0		GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	GSG1L|p.E295D|1|0.31|ENSG00000169181|chr16:27807500-27807500|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	469.894805	1406.66259	1.1795	0.00055425	-4.1427	-0.0019466	-2.9632	-0.0013924	470.22718218635964	15.46	0.048039	15.448	15.4	15.448	-0.012202	1392	34	0.780288	0.020362973	0.77876854	473.39038		12.353943	-0.01902	-0.001234	-0.00075972	NaN	0.9877	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3611.6			2516	7810	1481	1504							-0.02447914239792226
DSANDGFVRL	10	Unmodified	_DSANDGFVRL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2672699464501	2	547.26727	1092.51999	2.1933	0.0012003	-2.2549	-0.001234	-0.061607	-3.3715E-05	547.266270242402	22.694	0.33765	22.694	22.645	22.983	0	1266	103	0.85786515	0.06263775	0.85786515	347.94223	0	25.405273						853	15	5	NaN	NaN	NaN	3.1161E-36	1	12499	12499		181.68	109.6	1	689990			2517	4694	1482	1505	1947	1947					-0.022572234301151184
DSANDGFVRL	10	Unmodified	_DSANDGFVRL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2672699464501	2	547.26727	1092.51999	2.0627	0.0011288	-1.2755	-0.00069804	0.7872	0.00043081	547.2669073714785	22.717	0.26517	22.704	22.631	22.896	-0.01354	1269	91	0.8560222	0.055262625	0.85450274	347.19473	0	22.414001						842	12	6	NaN	NaN	NaN	3.1161E-36	1	12185	12185		181.68	126.08	1	675800			2518	4694	1482	1505	1948	1948					-0.022572234301151184
DSDAGSLVL	9	Unmodified	_DSDAGSLVL_					0	0	0			REV__nc|ENSG00000106078|O75128-2|COBL	REV__nc|ENSG00000106078|O75128-2|COBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.4309034250999	1	876.430903	875.423627	1.6292	0.0014278	2.2199	0.0019456	3.8491	0.0033734	876.4321253083128	29.787	0.072403	29.787	29.763	29.836	0	432	46	1.3625998	0.026826382	1.3625998	277.18567	0	5.457123						90	4	2	NaN	NaN	NaN	0.56671	1	5737	5737		6.8632	1.3974	1	8367.5	+		2519	13102	1483	1506	1949	1949					-0.019067909900968516
DSDAGSLVL	9	Unmodified						0	0	0			REV__nc|ENSG00000106078|O75128-2|COBL	REV__nc|ENSG00000106078|O75128-2|COBL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	876.430903	875.423627	1.6292	0.0014278	2.2199	0.0019456	3.8491	0.0033734	876.4321253083128	29.787	0.072403	29.787	29.763	29.836	0	432	46	1.3625998	0.026826382	1.3625998	277.18567		5.457123	0.0039734	-0.00043604	-0.0010288	NaN	6.8632	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8367.5	+		2520	13102	1483	1506							-0.019067909900968516
DSDTPSVSL	9	Unmodified	_DSDTPSVSL_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4207326693	1	920.420733	919.413456	1.9557	0.0018001	0.78151	0.00071932	2.7373	0.0025194	920.4215764881521	19.636	0.21613	19.636	19.612	19.828	0	384	67	1.3911947	0.039284587	1.3911947	282.79303	0	7.985504						329	10	3	NaN	NaN	NaN	0.062072	1	6395	6395		41.785	4.4821	1	57933	+	+	2521	8779	1484	1507	1950	1950					-0.049473987153191956
DSEEQDMAL	9	Unmodified	_DSEEQDMAL_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2082290858	2	519.208229	1036.40191	1.1102	0.0005764	-1.8495	-0.0009603	-0.73939	-0.0003839	519.7076805118796	31.887	0.096548	31.887	31.839	31.935	0	1329	34	0.81912065	0.020318925	0.81912065	332.45175	0	8.246704						122	5	4	NaN	NaN	NaN	0.51576	1	10046	10046		8.962	0	1	10086			2522	7897	1485	1508	1951	1951					-0.11483963800969832
DSEPGGPC	8	Unmodified	_DSEPGGPC_					0	0	0		ENST00000264638.8_1_17:40845348-40845411:+|nuORF	ENST00000264638.8_1_17:40845348-40845411:+|nuORF	ENST00000264638.8_1_17:40845348-40845411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.27704532	1	761.277045	760.269769	1.8031	0.0013727	1.63	0.0012409	3.4331	0.0026135	761.2780940855299	26.311	0.14477	26.3	26.276	26.421	-0.011135	642	82	1.2369217	0.048665047	1.2354022	252.20845	0	9.922806						180	7	2	NaN	NaN	NaN	0.84692	1	4141	4141		1.4396	1.1097	1	15647			2523	6327	1486	1509	1952	1952					-0.11995524027258853
DSEPSAVAL	9	Unmodified	_DSEPSAVAL_					0	0	0		nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-6|SON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4309034250999	1	888.430903	887.423627	1.7152	0.0015238	0.34071	0.0003027	2.0559	0.0018265	888.430756050271	22.404	0.12029	22.39	22.366	22.486	-0.013733	438	58	1.359022	0.033980012	1.3575026	276.40002	0	6.9108887						85	6	2	NaN	NaN	NaN	0.094712	1	5781	5781		36.586	17.302	1	5415.4			2524	4015	1487	1510	1953	1953					-0.024587909901015337
DSERLQGWQL	10	Unmodified	_DSERLQGWQL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3069264232	2	616.306926	1230.5993	0.70512	0.00043457	-3.7494	-0.0023108	-3.0442	-0.0018762	616.806099137146	29.207	0.21721	29.2	29.127	29.344	-0.0077209	1149	82	0.92958635	0.04956734	0.9280669	376.5043	0	20.075958						197	10	2	NaN	NaN	NaN	0.62092	1	16558	16558		13.463	0	1	63930			2525	3219	1488	1511	1954	1954					-0.006775764760050151
DSFSALQVLLR	11	Unmodified	_DSFSALQVLLR_					0	0	0		ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8509697861	2	624.85097	1247.68739	0.78813	0.00049246	-2.6006	-0.001625	-1.8125	-0.0011325	624.8493984286771	31.501	0.096544	31.501	31.477	31.573	0	1140	40	0.93509084	0.023847759	0.93509084	378.6762	0	9.65741						132	5	3	NaN	NaN	NaN	3.2775E-07	1	17726	17726		92.758	61.082	1	19458			2526	7501	1489	1512	1955	1955					0.07345044114595112
DSFSALQVLLR	11	Unmodified	_DSFSALQVLLR_					0	0	0		ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	ENST00000541916.5_1_13:49649476-49688811:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8509697861	2	624.85097	1247.68739	0.31775	0.00019855	-2.3437	-0.0014644	-2.0259	-0.0012659	624.849468141257	31.5	0.12068	31.495	31.471	31.592	-0.0044174	1137	40	0.9369253	0.023847759	0.93540585	379.4191	0	9.65741						151	6	3	NaN	NaN	NaN	0.14414	1	16979	16979		35.523	22.953	1	20525			2527	7501	1489	1512	1956	1956					0.07345044114595112
DSGDVAALR	9	Unmodified	_DSGDVAALR_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.23015615864995	2	452.230156	902.445759	1.7835	0.00080654	-1.9453	-0.00087974	-0.16187	-7.3202E-05	452.2294564637553	15.7	0.072028	15.687	15.615	15.687	-0.012612	1368	40	0.7950918	0.024044454	0.79357237	323.32642	0	9.777771						71	4	2	NaN	NaN	NaN	0.38313	1	5996	5996		14.425	4.679	1	7320.5			2528	4630	1490	1513	1957	1957					-0.009365665216705565
DSGDVAALR	9	Unmodified	_DSGDVAALR_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.23015615864995	2	452.230156	902.445759	2.0902	0.00094524	1.2311	0.00055676	3.3213	0.001502	452.23150108638134	15.748	0.071871	15.735	15.735	15.807	-0.012611	1371	52	0.79324204	0.031453013	0.7917226	322.5742	0	12.790466						70	4	2	NaN	NaN	NaN	0.070055	1	5997	5997		40.154	21.035	1	4824.1			2529	4630	1490	1513	1958	1958					-0.009365665216705565
DSHLGEGP	8	Unmodified	_DSHLGEGP_					0	0	0		ENST00000441379.5_1_21:46341018-46341171:+|nuORF	ENST00000441379.5_1_21:46341018-46341171:+|nuORF	ENST00000441379.5_1_21:46341018-46341171:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.358072833	1	811.358073	810.350796	1.4268	0.0011576	5.2736	0.0042788	6.7004	0.0054364	811.3618998050973	28.435	0.14479	28.426	28.402	28.547	-0.0089798	555	43	1.2891023	0.025154352	1.2875829	262.56	0	5.1233215						145	7	3	NaN	NaN	NaN	0.8439	1	4797	4797		3.1533	0	1	11014			2530	7007	1491	1514	1959	1959					-0.06196499992847748
DSHPQAKA	8	Unmodified	_DSHPQAKA_					0	0	0		ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.21176644024996	2	427.211766	852.40898	1.2008	0.00051301	-2.4374	-0.0010413	-1.2365	-0.00052826	427.21106014559996	13.709	0.095885	13.699	13.675	13.77	-0.010672	1512	37	0.7060759	0.022311985	0.70455647	287.3803	0	9.081238						79	5	2	NaN	NaN	NaN	0.83211	1	5281	5281		4.9097	0	1	7158.7			2531	5225	1492	1515	1960	1960					-0.02312818347581924
DSIGFLVG	8	Unmodified	_DSIGFLVG_					0	0	0			REV__DBH|p.M89I|1|0.28|ENSG00000123454|chr9:133636638-133636638|G/A|missense_variant	REV__DBH|p.M89I|1|0.28|ENSG00000123454|chr9:133636638-133636638|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.21598615090005	2	404.215986	806.417419	1.1857	0.00047926	-2.8175	-0.0011389	-1.6319	-0.00065962	404.21455748102767	24.55	0.096443	24.538	24.514	24.61	-0.012394	1422	40	0.7617651	0.024091423	0.7602457	310.32626	0	9.814331						88	5	2	NaN	NaN	NaN	0.82797	1	4747	4747		5.4659	2.3125	1	11626	+		2532	8304	1493	1516	1961	1961					0.00646735569057455
DSITVPVAR	9	Unmodified	_DSITVPVAR_					0	0	0		nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	nc|ENSG00000132842|O00203-3|AP3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.2718240081	2	479.271824	956.529095	1.8931	0.00090731	-3.1985	-0.0015329	-1.3054	-0.00062563	479.2703668133862	18.892	0.096024	18.892	18.892	18.988	0	1344	58	0.8098828	0.03510773	0.8098828	329.06198	0	14.264557						99	5	2	NaN	NaN	NaN	0.38313	1	7253	7253		14.425	2.3763	1	12380			2533	2796	1494	1517	1962	1962					0.049091699261907706
DSMKAKDRF	9	Unmodified	_DSMKAKDRF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.27404073355	2	549.274041	1096.53353	1.8791	0.0010322	-4.1875	-0.0023001	-2.3084	-0.0012679	549.2713148961051	18.125	0.11999	18.125	18.101	18.221	0	1242	70	0.87260187	0.042342782	0.87260187	353.90317	0	17.173065						211	6	3	NaN	NaN	NaN	0.49672	1	12689	12689		9.746	2.7616	1	21534			2534	3883	1495	1518	1963	1963					-0.010876889225755804
DSNGLFLF	8	Unmodified	_DSNGLFLF_					0	0	0		ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	ENSG00000128973|ENST00000249806|CLN6	ENSG00000128973|ENST00000249806|CLN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4461595588	1	912.44616	911.438883	1.684	0.0015366	-2.2966	-0.0020955	-0.61254	-0.00055891	912.444893909254	35.432	0.072201	35.433	35.385	35.457	0.00052643	348	31	1.412609	0.017833829	1.4110895	287.18304	0	3.6256104						55	4	2	NaN	NaN	NaN	0.63138	1	6123	6123		23.334	1.4994	1	3571.6			2535	2588	1496	1519	1964	1964					-0.0203787940224629
DSPDVQGKI	9	Unmodified	_DSPDVQGKI_					0	0	0		ENSG00000171405|ENST00000375501|XAGE5	ENSG00000171405|ENST00000375501|XAGE5	ENSG00000171405|ENST00000375501|XAGE5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4840016281001	1	958.484002	957.476725	1.1274	0.0010806	-9.8109	-0.0094035	-8.6834	-0.0083229	958.4744528828219	26.915	0.14477	26.915	26.843	26.988	0	312	55	1.433996	0.032060027	1.433996	291.32242	0	6.5131226						156	7	3	NaN	NaN	NaN	0.16171	1	7270	7270		27.789	7.2334	1	13726			2536	4779	1497	1520	1965	1965					-0.0037141320741511663
DSQDFLREYVL	11	Unmodified	_DSQDFLREYVL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8407990303001	2	692.840799	1383.66705	1.4872	0.0010304	-1.3634	-0.00094459	0.12388	8.5829E-05	692.8400271100948	29.642	0.12066	29.642	29.618	29.739	0	1056	61	0.9863805	0.036588073	0.9863805	399.01663	0	14.800842						161	6	3	NaN	NaN	NaN	0.16721	1	19922	19922		33.377	23.766	1	14329			2537	3764	1498	1521	1966	1966					-0.009441713358455672
DSQDFLREYVL	11	Unmodified	_DSQDFLREYVL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8407990303001	2	692.840799	1383.66705	0.91423	0.00063341	-2.2604	-0.0015661	-1.3461	-0.00093266	692.8384158482141	29.642	0.12064	29.635	29.61	29.731	-0.0070648	1053	73	0.9882094	0.043915153	0.98669	399.75647	0	17.764832						187	6	4	NaN	NaN	NaN	0.45017	1	18988	18988		20.255	10.685	1	15673			2538	3764	1498	1521	1967	1967					-0.009441713358455672
DSSCRLEQLP	10	Unmodified	_DSSCRLEQLP_					0	0	0		nc|nan|Q8N4C9-2|C17orf78;ENSG00000278505|ENST00000615133|C17orf78	nc|nan|Q8N4C9-2|C17orf78	nc|nan|Q8N4C9-2|C17orf78	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2742376988	2	574.274238	1146.53392	2.0448	0.0011743	-11.969	-0.0068732	-9.9237	-0.0056989	574.2673067860368	23.296	0.16877	23.296	23.248	23.417	0	1161	88	0.9222442	0.053285003	0.9222442	373.83426	0	21.599213						204	8	2	NaN	NaN	NaN	0.5917	1	14676	14676		15.463	1.9996	1	54297			2539	6204	1499	1522	1968	1968					-0.03348313993365082
DSSNNVILR	9	Unmodified	_DSSNNVILR_					0	0	0		ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.26981263540006	2	509.269813	1016.52507	1.9554	0.00099583	-3.7345	-0.0019019	-1.7791	-0.00090606	509.26767217708107	16.854	0.16782	16.854	16.806	16.973	0	1317	43	0.8265074	0.025847852	0.8265074	335.53574	0	10.493408						153	8	3	NaN	NaN	NaN	0.25548	1	9235	9235		21.771	5.1869	1	19479			2540	2121	1500	1523	1969	1969					0.01747080432483017
DSSNNVILR	9	Unmodified	_DSSNNVILR_					0	0	0		ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.26981263540006	2	509.269813	1016.52507	1.4443	0.00073551	-0.73909	-0.00037639	0.70516	0.00035912	509.2698563836015	16.85	0.21573	16.837	16.789	17.005	-0.013294	1317	79	0.8265074	0.047982335	0.82498795	335.5357	0	19.47931						222	10	3	NaN	NaN	NaN	0.030696	1	9058	9058		58.2	31.468	1	26086			2541	2121	1500	1523	1970	1970					0.01747080432483017
DSTFSGFLV	9	Unmodified	_DSTFSGFLV_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.4672889314002	1	972.467289	971.460012	1.5317	0.0014895	-1.3108	-0.0012747	0.22083	0.00021475	972.4662065678298	37.072	0.12048	37.072	37.024	37.145	0	297	46	1.4428991	0.026706696	1.4428991	293.07126	0	5.424469						75	6	2	NaN	NaN	NaN	0.3389	1	7645	7645		16.417	4.8682	1	4333.4			2542	6019	1501	1524	1971	1971					-0.02685914093365227
DSTFSGFLV	9	Unmodified						0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	972.467289	971.460012	1.8934	0.0018412	-0.20793	-0.00020221	1.6854	0.001639	972.4682972706298	37.046	0.072258	37.048	37.048	37.121	0.0022507	297	40	1.4428991	0.023140907	1.4413797	293.07123		4.700226	-0.012075	0.00057987	-0.00075972	NaN	16.417	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3078.7			2543	6019	1501	1524							-0.02685914093365227
DSTNVEAAF	9	Unmodified	_DSTNVEAAF_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4210670203	1	953.421067	952.413791	1.838	0.0017524	-1.3814	-0.0013171	0.4566	0.00043533	953.4197226025275	22.766	0.16886	22.766	22.718	22.887	0	348	52	1.412609	0.030319095	1.412609	286.99918	0	6.1599426						191	8	3	NaN	NaN	NaN	0.060816	1	7141	7141		42.318	21.762	1	18199			2544	1454	1502	1525	1972	1972					-0.06431978995465215
DSTNVEAAF	9	Unmodified	_DSTNVEAAF_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4210670203	1	953.421067	952.413791	1.5001	0.0014303	0.78403	0.00074751	2.2842	0.0021778	953.421300852911	22.766	0.16866	22.752	22.704	22.872	-0.01354	345	49	1.4143922	0.028534174	1.4128729	287.36148	0	5.797241						188	8	3	NaN	NaN	NaN	0.032826	1	7002	7002		55.413	22.96	1	18623			2545	1454	1502	1525	1973	1973					-0.06431978995465215
DSVAKRPE	8	Unmodified	_DSVAKRPE_					0	0	0		ENST00000473663.1_1_16:1989075-1991398:-|nuORF;ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF;MSRB1|p.A52T|1|0.11|ENSG00000198736|chr16:1941307-1941307|C/T|missense_variant	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.4737712928	1	901.473771	900.466495	1.6103	0.0014516	6.9409	0.006257	8.5512	0.0077087	901.4808198418666	31.017	0.072409	31.012	30.988	31.06	-0.0050716	384	64	1.3911947	0.03750491	1.3896753	282.88077	0	7.6260986						122	4	3	NaN	NaN	NaN	0.78967	1	5974	5974		10.605	2.3601	1	9138.1			2546	5801	1503	1526	1974	1974					0.012280238579933211
DSVTIFRSR	9	Unmodified	_DSVTIFRSR_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7934549072	2	540.793455	1079.57236	1.8197	0.00098406	-0.04904	-2.6521E-05	1.7706	0.00095754	540.793688426604	16.901	0.0959	16.901	16.877	16.973	0	1224	37	0.883646	0.022081137	0.883646	358.4522	0	8.957245						93	5	3	NaN	NaN	NaN	0.097143	1	11969	11969		36.235	14.4	1	7190.4			2547	140	1504	1527	1975	1975					0.035753597034727136
DSVTIFRSR	9	Unmodified						0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.793455	1079.57236	1.8071	0.00097725	-3.935	-0.002128	-2.1279	-0.0011508	540.7917608697621	16.946	0.071913	16.933	16.909	16.981	-0.013294	1227	46	0.88180584	0.027605891	0.8802864	357.70575		11.198395	0.015661	-0.0022656	-0.0016798	NaN	36.235	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7489.7			2548	140	1504	1527							0.035753597034727136
DSVYLDALNYR	11	Unmodified	_DSVYLDALNYR_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8276916550499	2	664.827692	1327.64083	2.0868	0.0013874	1.2092	0.00080389	3.296	0.0021912	664.8277048837708	25.178	0.048265	25.178	25.178	25.226	0	1044	28	0.99369496	0.016456664	0.99369496	402.14328	0	6.6599426						36	3	2	NaN	NaN	NaN	0.69656	1	19219	19219		7.6826	4.7931	1	2283.3			2549	5222	1505	1528	1976	1976					-0.009884405073762537
DSWQENPEEPC	11	Unmodified	_DSWQENPEEPC_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;RNF213|p.K345Efs*52|1|0.28|ENSG00000173821|chr17:80289753-80289754|-/G|frameshift_variant	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.17155830350003	3	445.171558	1332.49285	1.0804	0.00048095	-1.6363	-0.00072845	-0.55597	-0.0002475	445.1715675755043	20.453	0.12034	20.439	20.391	20.511	-0.014143	1428	37	0.7580582	0.02224183	0.75653875	460.1526	0	13.501129						119	6	3	NaN	NaN	NaN	0.74794	1	18431	18431		1.6806	0	1	11939			2550	13662	1506	1529	1977	1977					-0.16010119823476998
DSYAKEKPF	9	Unmodified	_DSYAKEKPF_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7691141436501	2	542.769114	1083.52368	0.99274	0.00053883	0.85596	0.00046459	1.8487	0.0010034	542.7695430785495	31.863	0.096529	31.863	31.815	31.911	0	1263	37	0.85970795	0.022109807	0.85970795	348.72568	0	8.968475						81	5	2	NaN	NaN	NaN	0.62619	1	12120	12120		4.4131	0.44458	1	8508.5			2551	4304	1507	1530	1978	1978					-0.014745536562713824
DSYDLNCKRQ	10	Unmodified	_DSYDLNCKRQ_					0	0	0			REV__ZNF804B|p.Y552C|1|0.1|ENSG00000182348|chr7:89334637-89334637|A/G|missense_variant	REV__ZNF804B|p.Y552C|1|0.1|ENSG00000182348|chr7:89334637-89334637|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.5241548536333	3	414.524155	1240.55064	1.3658	0.00056615	6.3126	0.0026167	7.6783	0.0031829	414.52642330249984	24.767	0.072392	24.767	24.719	24.791	0	1392	34	0.780288	0.020362973	0.780288	474.00598	0	12.370026						83	4	3	NaN	NaN	NaN	0.73444	1	17545	17545		2.7042	0	1	7221.2	+		2552	13657	1508	1531	1979	1979					-0.06001813107400267
DSYMVDYF	8	Unmodified	_DSYMVDYF_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.407725142	1	1039.40773	1038.40045	1.8026	0.0018737	1.4265	0.0014827	3.2291	0.0033564	1039.409147643439	30.125	0.12067	30.125	30.101	30.222	0	204	40	1.4979934	0.023064852	1.4979934	303.98712	0	4.680542						110	6	2	NaN	NaN	NaN	0.45125	1	10118	10118		33.698	19.961	1	8305.9			2553	3322	1509	1532	1980	1980					-0.1172155309907339
DSYMVDYF	8	Unmodified	_DSYMVDYF_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.407725142	1	1039.40773	1038.40045	1.1203	0.0011644	1.037	0.0010778	2.1572	0.0022422	1039.4077775875842	30.124	0.12064	30.118	30.07	30.19	-0.0064106	198	49	1.5015416	0.028385997	1.5000222	304.70718	0	5.760376						121	6	3	NaN	NaN	NaN	0.30832	1	9909	9909		41.46	19.334	1	8725.3			2554	3322	1509	1532	1981	1981					-0.1172155309907339
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.2619876033	2	502.261988	1002.50942	3.057	0.0015354	-2.3713	-0.001191	0.68563	0.00034437	502.26051585618046	13.613	0.36033	13.613	13.517	13.877	0	1317	112	0.8265074	0.06834549	0.8265074	335.5984	0	27.751282						1267	16	5	NaN	NaN	NaN	1.8911E-35	1	8696	8696		180.83	96.596	1	2542900			2555	6047;5890	1510	1533	1982	1982					0.008267939154279702
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.51669874	1	1003.5167	1002.50942	2.32	0.0023281	-0.64977	-0.00065205	1.6702	0.0016761	1003.5153132669899	13.589	0.1441	13.589	13.565	13.709	0	270	46	1.458913	0.026678443	1.458913	296.19547	0	5.4163513						146	7	2	NaN	NaN	NaN	0.27608	1	8697	8697		20.449	8.9002	1	13312			2556	6047;5890	1510	1533	1983	1983					0.008267939154279702
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2619876033	2	502.261988	1002.50942	1.1987	0.00060204	-4.3902	-0.002205	-3.1915	-0.001603	502.76037472602223	14.069	0.11985	14.058	14.058	14.178	-0.010672	1320	52	0.824661	0.0313918	0.8231416	334.84866	0	12.746429						123	6	2	NaN	NaN	NaN	0.084037	1	8520	8520		38.131	5.6781	1	24356			2557	6047;5890	1510	1533	1984	1984					0.008267939154279702
DTAAQITQR	9	Unmodified	_DTAAQITQR_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2619876033	2	502.261988	1002.50942	2.3045	0.0011574	-1.5686	-0.00078784	0.73587	0.0003696	502.2607373442638	13.613	0.40756	13.603	13.507	13.915	-0.010098	1317	154	0.8265074	0.094246805	0.82498795	335.5984	0	38.26837						1425	18	5	NaN	NaN	NaN	1.9911E-35	1	8522	8522		180.25	98.55	1	2481600			2558	6047;5890	1510	1533	1985	1985					0.008267939154279702
DTAAQITQR	9	Unmodified						0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.261988	1002.50942	1.789	0.00089853	-5.7244	-0.0028752	-3.9355	-0.0019766	502.26001895270394	14.117	0.096095	14.117	14.117	14.213	0	1323	49	0.8228144	0.029546797	0.8228144	334.0989		11.997284	0.029436	-0.00075362	-0.00016357	NaN	38.131	104	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17225			2559	6047;5890	1510	1533							0.008267939154279702
DTALHAAA	8	Unmodified	_DTALHAAA_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1;nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.3838936529999	1	769.383894	768.376617	1.0973	0.00084428	-5.6675	-0.0043605	-4.5702	-0.0035162	769.3794933882539	41.401	0.096287	41.401	41.353	41.45	0	573	58	1.2783196	0.034143448	1.2783196	260.60077	0	6.960541						77	5	2	NaN	NaN	NaN	0.84876	1	4340	4340		0.39566	0	1	5628.6			2560	2912	1511	1534	1986	1986					-0.016836057505884128
DTANLDLLL	9	Unmodified	_DTANLDLLL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5357028476002	1	987.535703	986.528426	2.0084	0.0019834	-0.79538	-0.00078547	1.2131	0.0011979	987.5355368332739	27.688	0.16891	27.688	27.615	27.784	0	252	82	1.4695803	0.047995567	1.4695803	298.42676	0	9.746429						196	8	2	NaN	NaN	NaN	0.021751	1	8103	8103		69.782	5.824	1	39930	+		2561	11080	1512	1535	1987	1987					0.03462330486490828
DTAQIFRVNLR	11	Unmodified	_DTAQIFRVNLR_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.8727678607	2	666.872768	1331.73098	1.6923	0.0011286	-1.7578	-0.0011722	-0.06551	-4.3687E-05	666.8714802788181	22.501	0.096375	22.501	22.477	22.573	0	1068	40	0.97906286	0.023786128	0.97906286	396.20923	0	9.625824						112	5	4	NaN	NaN	NaN	0.3345	1	19285	19285		24.393	12.345	1	16576			2562	5898	1513	1536	1988	1988					0.07838653611747759
DTAQIFRVNLR	11	Unmodified	_DTAQIFRVNLR_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.8727678607	2	666.872768	1331.73098	1.4907	0.00099409	-1.8581	-0.0012391	-0.36739	-0.000245	666.871330705489	22.524	0.072401	22.511	22.486	22.559	-0.013733	1068	37	0.97906286	0.021957576	0.9775434	396.20923	0	8.885864						116	4	3	NaN	NaN	NaN	0.64656	1	18428	18428		10.965	0.72139	1	17592			2563	5898	1513	1536	1989	1989					0.07838653611747759
DTAVAGHELL	10	Unmodified	_DTAVAGHELL_					0	0	0		ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2667386302	2	513.266739	1024.51892	2.1076	0.0010817	-1.4525	-0.00074549	0.6551	0.00033624	513.2659405962014	19.876	0.16833	19.876	19.852	20.021	0	1299	43	0.8375814	0.025831044	0.8375814	339.996	0	10.485504						154	8	3	NaN	NaN	NaN	0.53991	1	9553	9553		17.799	0.018654	1	18507			2564	5576	1514	1537	1990	1990					0.007645622009476938
DTAYLKVVP	9	Unmodified	_DTAYLKVVP_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5615236676001	1	1005.56152	1004.55425	-0.21954	-0.00022076	0.80962	0.00081413	0.59009	0.00059337	1005.5623015518519	54.522	0.12054	54.521	54.497	54.617	-0.0006218	159	67	1.5245869	0.038968682	1.5230675	309.52036	0	7.911377						182	6	3	NaN	NaN	NaN	0.66196	1	8601	8601		2.4615	0.53688	1	16352	+		2565	8931	1515	1538	1991	1991					0.05215224728760859
DTDFCSRR	8	Unmodified	_DTDFCSRR_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.21926550885	2	500.219266	998.423978	2.0262	0.0010135	-4.9862	-0.0024942	-2.9601	-0.0014807	500.7175909006962	25.636	0.14474	25.636	25.564	25.708	0	1335	46	0.8154261	0.027713597	0.8154261	331.11725	0	11.253571						126	7	3	NaN	NaN	NaN	0.77489	1	8508	8508		12.588	3.4647	1	10291			2566	559	1516	1539	1992	1992					-0.07529694541881327
DTDPLVTVM	9	Unmodified	_DTDPLVTVM_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4812244361002	1	990.481224	989.473948	1.8868	0.0018688	2.8498	0.0028227	4.7366	0.0046915	990.4835289911977	29.16	0.072411	29.16	29.136	29.208	0	228	43	1.4837929	0.024861455	1.4837929	301.30054	0	5.048401						67	4	2	NaN	NaN	NaN	0.25448	1	8186	8186		21.835	6.3723	1	6506.8			2567	1273	1517	1540	1993	1993					-0.02121004656578407
DTDPLVTVM	9	Oxidation (M)	_DTDPLVTVM(Oxidation (M))_		DTDPLVTVM(1)		DTDPLVTVM(47)	0	0	1		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4761390582003	1	1006.47614	1005.46886	1.9478	0.0019604	-4.4561	-0.004485	-2.5083	-0.0025245	1006.471333561052	23.947	0.096453	23.934	23.886	23.982	-0.013048	237	67	1.4784646	0.03905976	1.4769452	300.15295	0	7.929779						113	5	2	NaN	NaN	NaN	0.04947	1	8611	8611		47.136	22.175	1	7110.6			2568	1273	1517	1541	1994	1994		138			-0.03365308519187238
DTEEEEEKG	9	Unmodified	_DTEEEEEKG_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4218548812999	1	1065.42185	1064.41458	1.5628	0.001665	1.51	0.0016088	3.0728	0.0032738	1065.423941856785	27.084	0.072426	27.084	27.06	27.133	0	192	79	1.5050892	0.046102762	1.5050892	305.3292	0	9.352631						159	4	3	NaN	NaN	NaN	0.63698	1	11306	11306		3.9685	0	1	15209	+		2569	10620	1518	1542	1995	1995					-0.11505229137083006
DTEIPFLL	8	Unmodified	_DTEIPFLL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.5084254646	1	947.508425	946.501149	1.1598	0.0010989	-1.3231	-0.0012536	-0.16335	-0.00015477	947.5084291199952	31.959	0.096561	31.959	31.887	31.983	0	264	52	1.4624695	0.030229092	1.4624695	297.15576	0	6.142151						124	5	3	NaN	NaN	NaN	0.54545	1	6999	6999		28.667	0	1	9325.8			2570	1022	1519	1543	1996	1996					0.02575846946092497
DTESTYSGYS	10	Unmodified	_DTESTYSGYS_					0	0	0		nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2171083629	2	555.217108	1108.41966	2.1356	0.0011857	-5.5981	-0.0031081	-3.4624	-0.0019224	555.7148874620855	23.706	0.024111	23.693	23.669	23.693	-0.013048	1257	40	0.86339295	0.023950994	0.8618735	350.12167	0	9.712555						66	2	3	NaN	NaN	NaN	0.73444	1	12825	12825		5.6942	0.2283	1	4578.1			2571	4879	1520	1544	1997	1997					-0.1302092527446348
DTESTYSGYS	10	Unmodified	_DTESTYSGYS_					0	0	0		nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2171083629	2	555.217108	1108.41966	1.8026	0.0010008	-4.6158	-0.0025628	-2.8132	-0.001562	555.715497201429	23.778	0.09639	23.765	23.741	23.837	-0.013048	1257	46	0.86339295	0.027629793	0.8618735	350.12167	0	11.204407						95	5	3	NaN	NaN	NaN	0.73444	1	12826	12826		5.6942	0.2283	1	7713.4			2572	4879	1520	1544	1998	1998					-0.1302092527446348
DTESTYSGYS	10	Unmodified						0	0	0		nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	nc|ENSG00000173218|Q8TAA9-2|VANGL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.217108	1108.41966	1.358	0.00075399	-4.4739	-0.002484	-3.1159	-0.00173	555.2141990820395	23.754	0.14456	23.754	23.682	23.827	0	1257	64	0.86339295	0.038702607	0.86339295	350.12167		15.694611	0.030758	0.00060466	0.00075972	NaN	5.6942	110	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10463			2573	4879	1520	1544							-0.1302092527446348
DTFFLITWN	9	Unmodified	_DTFFLITWN_					0	0	0		CLCA4|p.L526V|1|0.2|ENSG00000016602|chr1:86574648-86574648|C/G|missense_variant;ENSG00000016602|ENST00000370563|CLCA4	CLCA4|p.L526V|1|0.2|ENSG00000016602|chr1:86574648-86574648|C/G|missense_variant	CLCA4|p.L526V|1|0.2|ENSG00000016602|chr1:86574648-86574648|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7873068968001	2	578.787307	1155.56006	1.1171	0.00064656	3.447	0.0019951	4.5641	0.0026416	578.7907630658901	28.942	0.16895	28.933	28.837	29.006	-0.0083485	1185	46	0.90755045	0.027564168	0.906031	367.84387	0	11.17218						166	8	3	NaN	NaN	NaN	0.23112	1	14507	14507		23.334	2.8211	1	25543			2574	168	1521	1545	1999	1999					-0.011496767595644997
DTFGPDPTM	9	Unmodified	_DTFGPDPTM_					0	0	0		ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4029741151	1	980.402974	979.395698	2.0191	0.0019796	0.45287	0.00044399	2.472	0.0024235	980.40409595115	23.562	0.0963	23.562	23.538	23.634	0	333	73	1.4215236	0.042760253	1.4215236	288.69687	0	8.684174						150	5	3	NaN	NaN	NaN	0.036546	1	7848	7848		52.624	18.926	1	13670			2575	2183	1522	1546	2000	2000					-0.09482437241831576
DTFGPDPTM	9	Unmodified	_DTFGPDPTM_					0	0	0		ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4029741151	1	980.402974	979.395698	2.1816	0.0021388	0.56606	0.00055497	2.7476	0.0026938	980.4028758341447	23.561	0.14464	23.548	23.524	23.669	-0.013048	330	67	1.4233059	0.03919685	1.4217864	289.05884	0	7.9604797						160	7	3	NaN	NaN	NaN	0.0040938	1	7687	7687		104.71	75.112	1	13395			2576	2183	1522	1546	2001	2001					-0.09482437241831576
DTFGPDPTM	9	Oxidation (M)	_DTFGPDPTM(Oxidation (M))_		DTFGPDPTM(1)		DTFGPDPTM(67)	0	0	1		ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.3978887372001	1	996.397889	995.390612	2.1423	0.0021346	0.55038	0.0005484	2.6927	0.002683	996.3989686053983	19.876	0.14428	19.876	19.828	19.972	0	336	58	1.419741	0.033860803	1.419741	288.27057	0	6.8752747						164	7	2	NaN	NaN	NaN	0.024221	1	8385	8385		66.656	35.095	1	14448			2577	2183	1522	1547	2002	2002		252			-0.10726741104440407
DTFGPDPTM	9	Oxidation (M)	_DTFGPDPTM(Oxidation (M))_		DTFGPDPTM(1)		DTFGPDPTM(67)	0	0	1		ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.3978887372001	1	996.397889	995.390612	1.7229	0.0017167	-0.27573	-0.00027474	1.4472	0.001442	996.3978342550342	19.851	0.14436	19.837	19.789	19.934	-0.014141	339	64	1.4179583	0.03742516	1.4164388	287.9086	0	7.5989685						180	7	2	NaN	NaN	NaN	0.024221	1	8219	8219		66.656	35.095	1	14746			2578	2183	1522	1547	2003	2003		252			-0.10726741104440407
DTFSYNFYNR	10	Unmodified	_DTFSYNFYNR_					0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G;nc|ENSG00000239713|Q9HC16-3|APOBEC3G;nc|ENSG00000128394|Q8IUX4-2|APOBEC3F;ENST00000463934.1_1_22:39473321-39475156:+|nuORF;nc|ENSG00000128394|Q8IUX4-3|APOBEC3F;ENSG00000128394|ENST00000308521|APOBEC3F	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000128394|ENST00000308521|APOBEC3F	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.7911091835001	2	663.791109	1325.56767	1.9351	0.0012845	-3.3985	-0.0022559	-1.4634	-0.00097136	663.7888190570956	22.742	0.048277	22.742	22.718	22.766	0	1107	49	0.9552588	0.029327333	0.9552588	386.59464	0	11.868805						39	3	2	NaN	NaN	NaN	0.72369	1	19178	19178		6.4299	1.7009	1	3801.6			2579	39;2566	1523	1548	2004	2004					-0.08209569229939007
DTGEKVVLIGR	11	Unmodified	_DTGEKVVLIGR_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.843144754	2	593.843145	1185.67174	1.6975	0.001008	-1.2749	-0.00075708	0.42259	0.00025095	593.8421268038132	17.789	0.071934	17.789	17.765	17.837	0	1167	37	0.91857195	0.022035897	0.91857195	372.19955	0	8.9288025						71	4	2	NaN	NaN	NaN	0.65755	1	16040	16040		10.244	5.2269	1	8929			2580	1649	1524	1549	2005	2005					0.08632757597570162
DTGEKVVLIGR	11	Unmodified	_DTGEKVVLIGR_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.843144754	2	593.843145	1185.67174	1.5978	0.00094884	-0.98353	-0.00058406	0.61427	0.00036478	593.8424559689099	17.81	0.071928	17.796	17.772	17.844	-0.013784	1167	34	0.91857195	0.02020061	0.9170525	372.19955	0	8.185181						89	4	3	NaN	NaN	NaN	0.055983	1	15427	15427		48.319	31.735	1	8821.6			2581	1649	1524	1549	2006	2006					0.08632757597570162
DTHEQAILRL	10	Unmodified	_DTHEQAILRL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.21917160643335	3	399.219172	1194.63569	1.012	0.000404	-1.3898	-0.00055482	-0.37779	-0.00015082	399.21855047840876	20.79	0.12049	20.79	20.766	20.887	0	1452	34	0.74322224	0.020409405	0.74322224	451.68008	0	12.403473						71	6	2	NaN	NaN	NaN	0.77292	1	16300	16300		2.239	0.13639	1	5559.3			2582	2190	1525	1550	2007	2007					0.046153004207099
DTHEQAILRL	10	Unmodified						0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	399.219172	1194.63569	1.2693	0.00050675	-3.2385	-0.0012929	-1.9692	-0.00078613	399.21774139612626	20.815	0.12035	20.801	20.776	20.897	-0.014088	1452	37	0.74322224	0.022263587	0.7417028	451.68008		13.530304	0.0051433	-0.00096621	-0.00075972	NaN	2.239	63	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5004.5			2583	2190	1525	1550							0.046153004207099
DTIDERAINKK	11	Unmodified	_DTIDERAINKK_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000120756|ENST00000457734|PLS1;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.90525265989993	3	434.905253	1301.69393	0.96674	0.00042044	-0.58822	-0.00025582	0.37852	0.00016462	434.9053048606074	12.484	0.19204	12.484	12.436	12.628	0	1488	46	0.7209441	0.027864277	0.7209441	437.72992	0	16.918121						273	9	4	NaN	NaN	NaN	0.36851	1	18813	18813		13.993	3.1706	1	71203			2584	1358	1526	1551	2008	2008					0.055149372753248826
DTIDERAINKK	11	Unmodified	_DTIDERAINKK_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000120756|ENST00000457734|PLS1;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.90525265989993	3	434.905253	1301.69393	0.90247	0.00039249	-0.85455	-0.00037165	0.047922	2.0842E-05	434.9047942293791	12.486	0.19219	12.477	12.429	12.621	-0.0088415	1488	49	0.7209441	0.029720247	0.71942466	437.72992	0	18.045013						256	9	4	NaN	NaN	NaN	0.56282	1	17978	17978		9.0915	1.6361	1	69265			2585	1358	1526	1551	2009	2009					0.055149372753248826
DTIDERTINKK	11	Unmodified	_DTIDERTINKK_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.908774222	3	444.908774	1331.70449	0.90977	0.00040476	-2.4538	-0.0010917	-1.544	-0.00068695	444.9082204514599	12.292	0.19193	12.292	12.22	12.412	0	1470	40	0.7320868	0.024133325	0.7320868	444.3903	0	14.649384						196	9	4	NaN	NaN	NaN	0.020353	1	19284	19284		55.696	26.187	1	37084			2586	2997	1527	1552	2010	2010					0.0519091992975973
DTIDERTINKK	11	Unmodified						0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	444.908774	1331.70449	0.8975	0.00039931	0.45657	0.00020313	1.3541	0.00060244	444.909154965353	12.294	0.14391	12.285	12.261	12.405	-0.0088415	1470	40	0.7320868	0.024135947	0.73056734	444.3903		14.65094	-0.0035287	0.0016362	-0.00075972	NaN	55.696	195	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39348			2587	2997	1527	1552							0.0519091992975973
DTIEIITDR	9	Unmodified	_DTIEIITDR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.2851283486	2	538.285128	1074.5557	2.2313	0.0012011	-1.0153	-0.00054654	1.216	0.00065453	538.2845385033673	21.585	0.33718	21.585	21.537	21.874	0	1233	82	0.87812483	0.04972291	0.87812483	356.2335	0	20.171356						582	15	5	NaN	NaN	NaN	1.7723E-07	1	11752	11752		134.97	32.927	1	379730			2588	2329	1528	1553	2011	2011					0.021408140268476927
DTIEIITDR	9	Unmodified	_DTIEIITDR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5629802305998	1	1075.56298	1074.5557	1.7589	0.0018918	0.0097243	1.0459E-05	1.7686	0.0019022	1075.561236886406	21.585	0.096386	21.585	21.585	21.681	0	99	34	1.5599792	0.019446135	1.5599792	316.42624	0	3.944458						57	5	2	NaN	NaN	NaN	0.53317	1	11753	11753		8.2448	1.9946	1	3504.1			2589	2329	1528	1553	2012	2012					0.021408140268476927
DTIEIITDR	9	Unmodified	_DTIEIITDR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2851283486	2	538.285128	1074.5557	1.8385	0.00098962	-0.98919	-0.00053246	0.84928	0.00045716	538.28483518121	21.585	0.33714	21.571	21.475	21.812	-0.013895	1233	82	0.87812483	0.04972291	0.8766054	356.2335	0	20.171356						546	15	6	NaN	NaN	NaN	0.00019594	1	11447	11447		117.07	41.368	1	371600			2590	2329	1528	1553	2013	2013					0.021408140268476927
DTIENVKAK	9	Unmodified	_DTIENVKAK_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.2823886944	2	509.282389	1016.55022	1.6351	0.00083273	-1.7236	-0.0008778	-0.088509	-4.5076E-05	509.28153836242404	12.316	0.3359	12.316	12.22	12.556	0	1290	58	0.84311575	0.03503555	0.84311575	342.27808	0	14.223328						340	15	4	NaN	NaN	NaN	0.0073225	1	9241	9241		97.85	24.717	1	66107			2591	3457	1529	1554	2014	2014					0.04261135235049096
DTIENVKAK	9	Unmodified	_DTIENVKAK_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;RPS27A|p.S20W|1|0.13|ENSG00000143947|chr2:55233373-55233373|C/G|missense_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000546846.1_1_12:47987011-47987203:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.2823886944	2	509.282389	1016.55022	1.0151	0.00051699	-0.66917	-0.0003408	0.34595	0.00017619	509.2816721957431	12.318	0.21586	12.309	12.213	12.429	-0.0088415	1287	64	0.8449601	0.038723588	0.84344065	343.02682	0	15.72052						285	10	4	NaN	NaN	NaN	0.084037	1	9063	9063		38.131	16.296	1	56639			2592	3457	1529	1554	2015	2015					0.04261135235049096
DTITETDLR	9	Unmodified	_DTITETDLR_					0	0	0		ENST00000522469.5_1_5:150075051-150080604:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000522469.5_1_5:150075051-150080604:-|nuORF	ENST00000522469.5_1_5:150075051-150080604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.26693559545	2	532.266936	1062.51932	2.0324	0.0010818	0.13412	7.1387E-05	2.1665	0.0011532	532.2671882993765	17.381	0.095961	17.381	17.357	17.453	0	1245	49	0.87076044	0.029466987	0.87076044	353.2966	0	11.9557495						90	5	2	NaN	NaN	NaN	0.25548	1	11223	11223		21.771	8.7682	1	13576			2593	990	1530	1555	2016	2016					-0.009440628698484943
DTITETDLR	9	Unmodified	_DTITETDLR_					0	0	0		ENST00000522469.5_1_5:150075051-150080604:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000522469.5_1_5:150075051-150080604:-|nuORF	ENST00000522469.5_1_5:150075051-150080604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.26693559545	2	532.266936	1062.51932	1.2357	0.00065772	0.23671	0.00012599	1.4724	0.00078371	532.2667663426698	17.378	0.14401	17.364	17.34	17.484	-0.013569	1254	55	0.8652351	0.03315395	0.86371565	351.05478	0	13.45166						156	7	3	NaN	NaN	NaN	0.077759	1	10970	10970		39.039	11.25	1	16767			2594	990	1530	1555	2017	2017					-0.009440628698484943
DTKIILETK	9	Unmodified	_DTKIILETK_					0	0	0		ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8160643362501	2	530.816064	1059.61758	1.8462	0.00098001	-3.7012	-0.0019647	-1.855	-0.00098466	530.8152406204447	16.47	0.095854	16.47	16.446	16.542	0	1224	61	0.883646	0.036821842	0.883646	358.53726	0	14.940338						125	5	3	NaN	NaN	NaN	0.029876	1	11087	11087		59.273	14.108	1	11201			2595	3516	1531	1556	2018	2018					0.09015165445998718
DTKIILETK	9	Unmodified	_DTKIILETK_					0	0	0		ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.8160643362501	2	530.816064	1059.61758	1.4728	0.00078178	-0.7735	-0.00041059	0.69929	0.00037119	530.815743028787	16.491	0.095827	16.478	16.454	16.55	-0.012995	1221	37	0.885486	0.022081137	0.88396657	359.28384	0	8.959381						98	5	3	NaN	NaN	NaN	0.06142	1	10849	10849		42.061	10.386	1	10941			2596	3516	1531	1556	2019	2019					0.09015165445998718
DTLSAIVFI	9	Unmodified	_DTLSAIVFI_					0	0	0			REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5506246303001	1	978.550625	977.543348	1.8223	0.0017832	-1.0905	-0.0010671	0.73181	0.00071611	978.5487773395745	29.691	0.09654	29.691	29.642	29.739	0	243	46	1.4749115	0.026650071	1.4749115	299.54727	0	5.4124756						70	5	2	NaN	NaN	NaN	0.094712	1	7825	7825		36.586	13.252	1	6484.8	+		2597	13423	1532	1557	2020	2020					0.053678223544807224
DTLSAIVFI	9	Unmodified						0	0	0			REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	978.550625	977.543348	1.8223	0.0017832	-1.0905	-0.0010671	0.73181	0.00071611	978.5487773395745	29.691	0.09654	29.691	29.642	29.739	0	243	46	1.4749115	0.026650071	1.4749115	299.54727		5.4124756	-0.06842	0.00037677	-0.0063443	NaN	36.586	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6484.8	+		2598	13423	1532	1557							0.053678223544807224
DTLSAIVFI	9	Unmodified						0	0	0			REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	REV__tr|U7SLH7|U7SLH7_FUSNUCDP-diacylglycerol--glycerol-3-phosphate1-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01936PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	978.550625	977.543348	1.9733	0.001931	-2.0258	-0.0019824	-0.05248	-5.1355E-05	978.5483876498618	29.835	0.048248	29.828	29.803	29.852	-0.0070667	219	52	1.4891195	0.030180931	1.4876001	302.43286		6.129608	0.06842	-0.00053851	0.0063443	NaN	36.586	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4111.9	+		2599	13423	1532	1557							0.053678223544807224
DTLTEQITL	9	Unmodified	_DTLTEQITL_					0	0	0		EP400-SFSWAP|1|fusion;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400-SFSWAP|1|fusion	EP400-SFSWAP|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2742293113	2	517.274229	1032.53391	1.4117	0.00073024	-9.2517	-0.0047857	-7.84	-0.0040554	517.2694768443898	24.671	0.048176	24.658	24.634	24.682	-0.012392	1308	52	0.83204526	0.03136462	0.8305259	337.71402	0	12.730408						62	3	2	NaN	NaN	NaN	0.25448	1	9678	9678		21.835	1.3863	1	6160.8			2600	5309	1533	1558	2021	2021					0.018940092782941065
DTLWKGML	8	Unmodified	_DTLWKGML_					0	0	0		ENSG00000261587|ENST00000696146|TMEM249	ENSG00000261587|ENST00000696146|TMEM249	ENSG00000261587|ENST00000696146|TMEM249	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.25204569370004	2	482.252046	962.489538	2.4904	0.001201	-5.1975	-0.0025065	-2.7071	-0.0013055	482.2513348102596	17.426	0.19203	17.412	17.34	17.532	-0.013567	1338	34	0.81357855	0.020325482	0.8120591	330.5346	0	8.25769						91	9	2	NaN	NaN	NaN	0.77489	1	7247	7247		12.588	4.2976	1	7106.3			2601	6147	1534	1559	2022	2022					0.006793266511181173
DTLWKGML	8	Unmodified						0	0	0		ENSG00000261587|ENST00000696146|TMEM249	ENSG00000261587|ENST00000696146|TMEM249	ENSG00000261587|ENST00000696146|TMEM249	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	482.252046	962.489538	2.2329	0.0010768	-4.773	-0.0023018	-2.5401	-0.001225	482.2493481297342	17.429	0.095917	17.429	17.429	17.525	0	1341	31	0.8117308	0.018476725	0.8117308	329.7839		7.506592	0.0084725	0.00016478	-0.00016417	NaN	12.588	37	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2594.4			2602	6147	1534	1559							0.006793266511181173
DTNEVDVPL	9	Unmodified	_DTNEVDVPL_					0	0	0		ENST00000403332.2_1_6:129478670-129479855:-|nuORF;ENSG00000107779|ENST00000372037|BMPR1A	ENST00000403332.2_1_6:129478670-129479855:-|nuORF	ENST00000403332.2_1_6:129478670-129479855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4785818992001	1	1001.47858	1000.47131	1.9115	0.0019143	2.8323	0.0028365	4.7438	0.0047508	1001.4790507639807	23.73	0.072309	23.73	23.706	23.778	0	267	100	1.4606913	0.05872357	1.4606913	296.5647	0	11.922668						176	4	2	NaN	NaN	NaN	0.10363	1	8601	8601		35.296	4.6864	1	14257			2603	1643	1535	1560	2023	2023					-0.028911367898899698
DTSGGTTALR	10	Unmodified	_DTSGGTTALR_					0	0	0		ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.74617036359996	2	489.74617	977.477788	1.5405	0.00075446	-1.1552	-0.00056575	0.38532	0.00018871	489.7456657039874	13.156	0.19216	13.156	13.06	13.252	0	1347	40	0.8080346	0.024026215	0.8080346	328.21136	0	9.759094						143	9	3	NaN	NaN	NaN	0.34981	1	7814	7814		25.681	6.5178	1	14911			2604	4583	1536	1561	2024	2024					-0.011851988385274126
DTSGLPSAIS	10	Unmodified	_DTSGLPSAIS_					0	0	0			REV__ENSG00000107890|ENST00000376087|ANKRD26;REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4680172129	1	947.468017	946.460741	1.1338	0.0010743	-11.017	-0.010438	-9.8827	-0.0093635	947.4585428100346	27.422	0.12068	27.411	27.363	27.484	-0.010126	306	73	1.4375578	0.042742133	1.4360384	292.09424	0	8.684662						221	6	3	NaN	NaN	NaN	0.76892	1	6860	6860		3.2116	0.058268	1	29849	+		2605	9023;13105	1537	1562	2025	2025					-0.014631194443268214
DTSSLPTVIMR	11	Unmodified	_DTSSLPTVIMR_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3211878914	2	610.321188	1218.62782	1.1629	0.00070974	-10.066	-0.0061434	-8.9029	-0.0054337	610.316498604439	23.851	0.14454	23.851	23.803	23.947	0	1170	73	0.91673553	0.04408127	0.91673553	371.3399	0	17.855896						139	5	2	NaN	NaN	NaN	0.61402	1	16954	16954		13.101	2.741	1	20271			2606	4743	1538	1563	2026	2026					0.02725405108913037
DTTSLRTK	8	Unmodified	_DTTSLRTK_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.25363125495005	2	461.253631	920.49271	0.71936	0.00033181	5.9011	0.0027219	6.6204	0.0030537	461.25601241673894	12.484	0.071965	12.484	12.484	12.556	0	1359	34	0.8006399	0.020343125	0.8006399	325.48688	0	8.270142						47	4	2	NaN	NaN	NaN	0.80191	1	6420	6420		8.962	0	1	3587.2			2607	2156	1539	1564	2027	2027					0.029282930294812104
DTTSYLIGR	9	Unmodified	_DTTSYLIGR_					0	0	0		LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2667386302	2	513.266739	1024.51892	1.2795	0.00065671	1.4954	0.00076751	2.7748	0.0014242	513.2676121783754	19.9	0.14438	19.885	19.837	19.982	-0.014141	1305	55	0.83389086	0.033207774	0.8323714	338.4979	0	13.479889						165	7	3	NaN	NaN	NaN	0.12866	1	9373	9373		31.675	18.673	1	17897			2608	2374	1540	1565	2028	2028					0.007645622009476938
DTVAQITQR	9	Unmodified	_DTVAQITQR_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2776376675	2	516.277638	1030.54072	2.0843	0.0010761	-3.6241	-0.001871	-1.5398	-0.00079495	516.2761374962487	15.894	0.16788	15.894	15.87	16.038	0	1290	64	0.84311575	0.03874451	0.84311575	342.21603	0	15.726166						285	8	4	NaN	NaN	NaN	0.013959	1	9806	9806		80.901	35.074	1	74598			2609	5902	1541	1566	2029	2029					0.026673669495039576
DTVAQITQR	9	Unmodified	_DTVAQITQR_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2776376675	2	516.277638	1030.54072	2.0968	0.0010826	-3.4583	-0.0017854	-1.3615	-0.00070289	516.2760080659918	15.891	0.16762	15.879	15.831	15.999	-0.012611	1290	64	0.84311575	0.03874451	0.8415963	342.21603	0	15.726166						323	8	4	NaN	NaN	NaN	0.013959	1	9602	9602		80.901	19.63	1	94574			2610	5902	1541	1566	2030	2030					0.026673669495039576
DTVATVTVL	9	Unmodified	_DTVATVTVL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.514239124	1	918.514239	917.506963	2.3061	0.0021182	-1.1154	-0.0010245	1.1907	0.0010937	918.5130130842335	25.588	0.21712	25.588	25.539	25.757	0	324	109	1.42687	0.06418812	1.42687	290.05377	0	13.048157						490	10	5	NaN	NaN	NaN	0.043119	1	6374	6374		49.833	13.246	1	143290	+		2611	9866	1542	1567	2031	2031					0.04490945457757789
DTVATVTVL	9	Unmodified	_DTVATVTVL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.514239124	1	918.514239	917.506963	2.181	0.0020033	0.20627	0.00018946	2.3873	0.0021928	918.5143733054721	25.588	0.193	25.576	25.552	25.745	-0.0116	324	124	1.42687	0.07311487	1.4253505	290.05374	0	14.862793						479	9	4	NaN	NaN	NaN	0.04947	1	6242	6242		47.136	10.549	1	145820	+		2612	9866	1542	1567	2032	2032					0.04490945457757789
DTVATVTVL	9	Unmodified						0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	918.514239	917.506963	2.3061	0.0021182	-1.1154	-0.0010245	1.1907	0.0010937	918.5130130842335	25.588	0.21712	25.588	25.539	25.757	0	324	109	1.42687	0.06418812	1.42687	290.05377		13.048157	0.0058899	-0.00064399	0.00075972	NaN	49.833	490	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143290	+		2613	9866	1542	1567							0.04490945457757789
DTVATVTVL	9	Unmodified						0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	918.514239	917.506963	2.181	0.0020033	0.20627	0.00018946	2.3873	0.0021928	918.5143733054721	25.588	0.193	25.576	25.552	25.745	-0.0116	324	124	1.42687	0.07311487	1.4253505	290.05374		14.862793	-0.0058899	0.00056998	-0.00075972	NaN	49.833	479	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145820	+		2614	9866	1542	1567							0.04490945457757789
DTVGIDAVL	9	Unmodified	_DTVGIDAVL_					0	0	0		ENSG00000116922|ENST00000486637|C1orf109;ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENSG00000116922|ENST00000486637|C1orf109	ENSG00000116922|ENST00000486637|C1orf109	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4829389956	1	902.482939	901.475663	1.5023	0.0013558	1.2547	0.0011324	2.757	0.0024882	902.4830332028871	29.4	0.12066	29.393	29.368	29.489	-0.0077209	360	61	1.405474	0.035690427	1.4039545	285.77945	0	7.2570496						122	6	2	NaN	NaN	NaN	0.094712	1	5986	5986		36.586	2.1477	1	12474			2615	2118	1543	1568	2033	2033					0.02098372423665751
DTVGIDAVL	9	Unmodified						0	0	0		ENSG00000116922|ENST00000486637|C1orf109;ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENSG00000116922|ENST00000486637|C1orf109	ENSG00000116922|ENST00000486637|C1orf109	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	902.482939	901.475663	1.5034	0.0013568	0.17326	0.00015636	1.6767	0.0015132	902.4835398759666	29.401	0.072382	29.401	29.377	29.449	0	363	64	1.4036897	0.037484884	1.4036897	285.41666		7.6219177	0.0042382	-0.00045939	-0.0001324	NaN	36.586	103	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10938			2616	2118	1543	1568							0.02098372423665751
DTVNSGFL	8	Unmodified	_DTVNSGFL_					0	0	0			REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF	REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4097740525002	1	852.409774	851.402498	1.8898	0.0016109	7.5831	0.0064639	9.4728	0.0080747	852.4167352287368	28.894	0.24138	28.894	28.822	29.063	0	405	118	1.3786905	0.06974113	1.3786905	280.58124	0	14.193207						521	11	5	NaN	NaN	NaN	0.67593	1	5405	5405		20.555	1.2707	1	131490	+		2617	8737	1544	1569	2034	2034					-0.029147562989351172
DTVNSGFL	8	Unmodified						0	0	0			REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF	REV__ENST00000467842.1_1_3:133494266-133496087:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	852.409774	851.402498	1.8898	0.0016109	7.5831	0.0064639	9.4728	0.0080747	852.4167352287368	28.894	0.24138	28.894	28.822	29.063	0	405	118	1.3786905	0.06974113	1.3786905	280.58124		14.193207	0.0045615	-0.00014045	0.00075972	NaN	20.555	521	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131490	+		2618	8737	1544	1569							-0.029147562989351172
DTVQITTLDT	10	Unmodified	_DTVQITTLDT_					0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.78241848415	2	553.782418	1105.55028	1.3341	0.00073878	-10.413	-0.0057663	-9.0785	-0.0050275	554.278839204606	28.363	0.096512	28.363	28.339	28.436	0	1233	55	0.87812483	0.033121705	0.87812483	356.10712	0	13.431915						106	5	2	NaN	NaN	NaN	0.58645	1	13079	13079		15.822	2.8191	1	14929	+		2619	10647	1545	1570	2035	2035					0.0017309044437752164
DTVQITTLDT	10	Unmodified						0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.782418	1105.55028	1.3341	0.00073878	-10.413	-0.0057663	-9.0785	-0.0050275	554.278839204606	28.363	0.096512	28.363	28.339	28.436	0	1233	55	0.87812483	0.033121705	0.87812483	356.10712		13.431915	-0.17644	0.0017822	0.00075972	NaN	15.822	106	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14929	+		2620	10647	1545	1570							0.0017309044437752164
DTVQITTLDT	10	Unmodified						0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.782418	1105.55028	1.7769	0.00098402	-13.514	-0.007484	-11.737	-0.0065	553.7759637003413	28.725	0.12065	28.716	28.644	28.765	-0.0083504	1233	31	0.87812483	0.01840496	0.8766054	356.10712		7.4637756	0.17644	-0.0016533	-0.00075972	NaN	15.822	54	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3390.1	+		2621	10647	1545	1570							0.0017309044437752164
DTVQRCREIF	10	Unmodified	_DTVQRCREIF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.81660404	2	633.816604	1265.61866	1.45	0.00091905	-10.251	-0.0064975	-8.8013	-0.0055784	633.8104567749652	37.864	0.1683	37.868	37.82	37.988	0.0034256	1119	40	0.9479278	0.023832321	0.94640833	383.8152	0	9.649689						173	8	3	NaN	NaN	NaN	0.64611	1	17319	17319		11.739	2.1272	1	15787			2622	1243	1546	1571	2036	2036					-0.0035294345675538352
DTVTMQVTAR	10	Unmodified	_DTVTMQVTAR_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2846054198501	2	561.284605	1120.55466	1.7004	0.00095439	0.36547	0.00020513	2.0658	0.0011595	561.2846190755209	17.066	0.12009	17.053	17.029	17.149	-0.013294	1269	52	0.8560222	0.03132391	0.85450274	347.08652	0	12.700745						138	6	3	NaN	NaN	NaN	0.66796	1	13302	13302		10.244	1.9662	1	14269			2623	5238	1547	1572	2037	2037					-0.0007972361368047132
DTVTMQVTAR	10	Unmodified						0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.284605	1120.55466	1.8441	0.0010351	-2.1785	-0.0012227	-0.33436	-0.00018767	561.2839491826953	17.069	0.12007	17.069	17.045	17.165	0	1269	43	0.8560222	0.025800347	0.8560222	347.08652		10.461121	0.0083608	-0.0016051	0.00075972	NaN	10.244	131	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11832			2624	5238	1547	1572							-0.0007972361368047132
DTVTMQVTAR	10	Oxidation (M)	_DTVTM(Oxidation (M))QVTAR_		DTVTM(1)QVTAR		DTVTM(54)QVTAR	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2820627309001	2	569.282063	1136.54957	1.0044	0.00057178	-1.2157	-0.00069209	-0.21133	-0.00012031	569.2819869229832	14.5	0.14376	14.489	14.441	14.585	-0.011218	1248	46	0.8689189	0.027623832	0.86739945	352.2554	0	11.198547						214	7	4	NaN	NaN	NaN	0.042793	1	13865	13865		54.277	13.32	1	22836			2625	5238	1547	1573	2038	2038		543			-0.013240274763120397
DTYPEEYAL	9	Unmodified	_DTYPEEYAL_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.4782475481998	1	1100.47825	1099.47097	2.1197	0.0023327	-0.58049	-0.00063881	1.5392	0.0016938	1100.4778621994162	25.371	0.19304	25.371	25.346	25.539	0	150	109	1.5299006	0.063767076	1.5299006	310.23587	0	12.930786						569	9	4	NaN	NaN	NaN	0.011942	1	12810	12810		87.021	22.471	1	76399			2626	4733	1548	1574	2039	2039					-0.07478556509772716
DTYPEEYAL	9	Unmodified	_DTYPEEYAL_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.4782475481998	1	1100.47825	1099.47097	2.347	0.0025828	0.24593	0.00027064	2.5929	0.0028534	1100.4779164519512	25.37	0.24127	25.358	25.31	25.551	-0.012011	150	124	1.5299006	0.0726043	1.5283811	310.23587	0	14.722809						540	11	3	NaN	NaN	NaN	0.023074	1	12479	12479		68.108	36.547	1	77133			2627	4733	1548	1574	2040	2040					-0.07478556509772716
DTYRDKIPE	9	Unmodified	_DTYRDKIPE_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7827528351501	2	568.782753	1135.55095	1.6661	0.00094763	0.9839	0.00055962	2.65	0.0015073	568.783104526585	20.501	0.31273	20.501	20.381	20.694	0	1239	76	0.87444305	0.046029747	0.87444305	354.4986	0	18.66043						357	14	3	NaN	NaN	NaN	0.16939	1	14297	14297		27.296	4.1786	1	76909			2628	13662	1549	1575	2041	2041					-0.011400701159118398
DTYSWLLKER	10	Unmodified	_DTYSWLLKER_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.84060206505	2	655.840602	1309.66665	1.6257	0.0010662	-1.4927	-0.00097896	0.13301	8.7237E-05	655.8399583545739	22.766	0.26529	22.766	22.718	22.983	0	1035	43	0.99917877	0.025586784	0.99917877	404.4197	0	10.356354						280	12	4	NaN	NaN	NaN	0.0071909	1	18934	18934		74.865	50.464	1	53893			2629	3963	1550	1576	2042	2042					0.02420453734930561
DTYSWLLKER	10	Unmodified	_DTYSWLLKER_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.84060206505	2	655.840602	1309.66665	1.1124	0.00072957	-0.23732	-0.00015564	0.8751	0.00057392	655.8403948223798	22.79	0.241	22.776	22.752	22.993	-0.01354	1035	43	0.99917877	0.025586784	0.9976593	404.4197	0	10.356354						267	11	5	NaN	NaN	NaN	0.00022865	1	18102	18102		101.27	66.821	1	47887			2630	3963	1550	1576	2043	2043					0.02420453734930561
DVAEDDPEL	9	Unmodified	_DVAEDDPEL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.4262119777001	1	1002.42621	1001.41894	1.825	0.0018295	1.0595	0.001062	2.8845	0.0028915	1002.4273253190005	21.513	0.14465	21.513	21.488	21.633	0	318	91	1.4304334	0.053427577	1.4304334	290.4177	0	10.84729						262	7	3	NaN	NaN	NaN	0.012495	1	8635	8635		85.344	48.042	1	32003			2631	4489	1551	1577	2044	2044					-0.08171719923507226
DVAEDDPEL	9	Unmodified	_DVAEDDPEL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4262119777001	1	1002.42621	1001.41894	1.712	0.0017162	-0.2521	-0.00025271	1.4599	0.0014635	1002.4256922963939	21.513	0.16865	21.499	21.45	21.619	-0.014006	315	85	1.4322147	0.049855232	1.4306953	290.77936	0	10.121979						232	8	3	NaN	NaN	NaN	0.010404	1	8466	8466		91.563	32.964	1	29580			2632	4489	1551	1577	2045	2045					-0.08171719923507226
DVAEVDTVR	9	Unmodified	_DVAEVDTVR_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.25637090915	2	502.256371	1002.49819	1.8471	0.00092774	0.022374	1.1238E-05	1.8695	0.00093897	502.25642057179584	16.23	0.21609	16.23	16.182	16.398	0	1314	73	0.8283535	0.04431057	0.8283535	336.34805	0	17.992035						285	10	3	NaN	NaN	NaN	0.012861	1	8694	8694		84.233	17.576	1	49311			2633	7990	1552	1578	2046	2046					-0.0029602817870681974
DVAEVDTVR	9	Unmodified	_DVAEVDTVR_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.25637090915	2	502.256371	1002.49819	1.845	0.00092666	-0.29728	-0.00014931	1.5477	0.00077735	502.2560924703481	16.227	0.11982	16.214	16.166	16.286	-0.012995	1314	64	0.8283535	0.038773835	0.8268341	336.34805	0	15.743927						189	6	3	NaN	NaN	NaN	0.13999	1	8519	8519		30.035	0	1	43540			2634	7990	1552	1578	2047	2047					-0.0029602817870681974
DVAEVDTVRR	10	Unmodified	_DVAEVDTVRR_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.3069264232	2	580.306926	1158.5993	1.9602	0.0011375	-2.0481	-0.0011885	-0.087851	-5.098E-05	580.3056874637681	14.189	0.14412	14.189	14.165	14.309	0	1200	58	0.89836043	0.034922183	0.89836043	364.1078	0	14.154053						201	7	4	NaN	NaN	NaN	0.28195	1	15102	15102		28.495	7.9398	1	35756			2635	7990	1553	1579	2048	2048					0.0263442352400034
DVAEVDTVRR	10	Unmodified	_DVAEVDTVRR_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.3069264232	2	580.306926	1158.5993	1.3883	0.00080567	-0.37366	-0.00021684	1.0147	0.00058883	580.3061317584071	14.189	0.14373	14.177	14.154	14.297	-0.011219	1197	46	0.9001988	0.027576089	0.8986794	364.85287	0	11.176666						198	7	4	NaN	NaN	NaN	0.00013585	1	14601	14601		107.32	64.327	1	31677			2636	7990	1553	1579	2049	2049					0.0263442352400034
DVAFTDPTL	9	Unmodified	_DVAFTDPTL_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4778536176999	1	978.477854	977.470577	1.9088	0.0018677	1.7401	0.0017027	3.6489	0.0035704	978.4800121631902	27.471	0.21721	27.471	27.398	27.615	0	282	124	1.4517976	0.072936416	1.4517976	294.85327	0	14.813049						525	10	3	NaN	NaN	NaN	0.0018626	1	7811	7811		111.43	50.162	1	131630			2637	3749	1554	1580	2050	2050					-0.019059314389664905
DVAFTDPTL	9	Unmodified	_DVAFTDPTL_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4778536176999	1	978.477854	977.470577	1.6834	0.0016472	2.5921	0.0025363	4.2755	0.0041835	978.4810777453528	27.494	0.14478	27.484	27.412	27.557	-0.009552	282	118	1.4517976	0.069371104	1.4502782	294.85327	0	14.088959						506	7	3	NaN	NaN	NaN	0.0094682	1	7652	7652		93.472	34.873	1	132080			2638	3749	1554	1580	2051	2051					-0.019059314389664905
DVASVIVTK	9	Unmodified	_DVASVIVTK_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.27657503500006	2	466.276575	930.538597	0.97494	0.00045459	-3.1008	-0.0014458	-2.1258	-0.00099123	466.2750089344262	19.322	0.072096	19.308	19.284	19.356	-0.014141	1338	52	0.81357855	0.031412125	0.8120591	330.69437	0	12.768066						77	4	2	NaN	NaN	NaN	0.62869	1	6486	6486		4.3102	1.4207	1	6016.5			2639	1281	1555	1581	2052	2052					0.07054938211729223
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.8186070252001	2	522.818607	1043.62266	1.4738	0.00077054	0.25945	0.00013564	1.7333	0.00090618	522.8186608441365	26.674	0.09655	26.674	26.65	26.746	0	1242	100	0.87260187	0.060779035	0.87260187	354.12573	0	24.665771						253	5	3	NaN	NaN	NaN	0.030693	1	10374	10374		59.273	31.977	1	38561			2640	1281	1556	1582	2053	2053					0.10259469308630287
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.6299375838	1	1044.62994	1043.62266	1.727	0.0018041	0.93508	0.00097681	2.6621	0.0027809	1044.6312429230115	26.674	0.072411	26.674	26.65	26.722	0	138	55	1.5369828	0.031863213	1.5369828	311.87875	0	6.465576						92	4	2	NaN	NaN	NaN	0.095478	1	10375	10375		46.588	22.026	1	11668			2641	1281	1556	1582	2054	2054					0.10259469308630287
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.6299375838	1	1044.62994	1043.62266	1.2946	0.0013524	0.70674	0.00073828	2.0014	0.0020907	1044.6312008775217	26.697	0.0965	26.687	26.639	26.735	-0.010645	135	46	1.5387528	0.026548386	1.5372335	312.23795	0	5.3871155						99	5	3	NaN	NaN	NaN	0.00024365	1	10168	10168		100.42	44.828	1	11230			2642	1281	1556	1582	2055	2055					0.10259469308630287
DVASVIVTKL	10	Unmodified	_DVASVIVTKL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.8186070252001	2	522.818607	1043.62266	1.1549	0.0006038	0.93764	0.00049022	2.0925	0.001094	522.8190689191139	26.697	0.0965	26.687	26.639	26.735	-0.010645	1248	103	0.8689189	0.06261742	0.86739945	352.63107	0	25.411835						285	5	3	NaN	NaN	NaN	0.0037187	1	10169	10169		80.241	21.843	1	47549			2643	1281	1556	1582	2056	2056					0.10259469308630287
DVATVTAVL	9	Unmodified	_DVATVTAVL_					0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.5036744377002	1	888.503674	887.496398	1.528	0.0013577	0.95584	0.00084926	2.4839	0.0022069	888.5053780127655	24.478	0.072367	24.478	24.454	24.526	0	393	40	1.3858368	0.023219705	1.3858368	281.85333	0	4.722473						75	4	2	NaN	NaN	NaN	0.27442	1	5912	5912		20.555	0	1	6497	+		2644	10635	1557	1583	2057	2057					0.04814962803345679
DVATVTAVL	9	Unmodified						0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	888.503674	887.496398	1.528	0.0013577	0.95584	0.00084926	2.4839	0.0022069	888.5053780127655	24.478	0.072367	24.478	24.454	24.526	0	393	40	1.3858368	0.023219705	1.3858368	281.85333		4.722473	0.0064687	0.00095758	0.00075972	NaN	20.555	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6497	+		2645	10635	1557	1583							0.04814962803345679
DVAVISGF	8	Unmodified	_DVAVISGF_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4246958352002	1	807.424696	806.417419	2.0633	0.0016659	1.1888	0.00095989	3.2521	0.0026258	807.4251580962864	24.55	0.072311	24.538	24.514	24.586	-0.012394	483	40	1.3321642	0.023294091	1.3306447	271.35278	0	4.7448425						58	4	2	NaN	NaN	NaN	0.82797	1	4749	4749		5.4659	0	1	3920.7	+		2646	10679	1558	1584	2058	2058					0.00646735569057455
DVCVTSYEML	10	Unmodified	_DVCVTSYEML_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2541250334	2	580.254125	1158.4937	1.5641	0.0009076	-5.8685	-0.0034052	-4.3044	-0.0024976	580.2505582271522	24.984	0.1448	24.972	24.924	25.068	-0.012392	1245	34	0.87076044	0.020257473	0.869241	352.92184	0	8.210419						114	7	3	NaN	NaN	NaN	0.72631	1	14581	14581		6.2502	0	1	12901			2647	3799	1559	1585	2059	2059					-0.0792099670816242
DVCVTSYEML	10	Unmodified						0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.254125	1158.4937	1.7632	0.0010231	-8.3389	-0.0048387	-6.5757	-0.0038156	580.2505726377789	24.96	0.1448	24.96	24.936	25.081	0	1245	46	0.87076044	0.027620852	0.87076044	352.92184		11.194824	-0.0057613	-0.0014804	0.00075972	NaN	6.2502	165	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15181			2648	3799	1559	1585							-0.0792099670816242
DVDINTWVPF	10	Unmodified	_DVDINTWVPF_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.2954960696501	2	603.295496	1204.57644	1.4181	0.00085554	5.7873	0.0034915	7.2055	0.004347	603.299389327236	26.625	0.19316	26.625	26.577	26.77	0	1167	94	0.91857195	0.056959867	0.91857195	372.13232	0	23.075592						348	9	2	NaN	NaN	NaN	0.64158	1	16607	16607		12.049	0.30984	1	52178			2649	4978	1560	1586	2060	2060					-0.017665955934717203
DVDPQSPVM	9	Unmodified	_DVDPQSPVM_					0	0	0		ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ENSG00000108602|ENST00000225740|ALDH3A1	ENSG00000108602|ENST00000225740|ALDH3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.4451732808001	1	987.445173	986.437897	2.1763	0.002149	2.1215	0.0020949	4.2978	0.0042438	987.4481893312252	21.585	0.072252	21.585	21.561	21.633	0	309	43	1.435777	0.024930239	1.435777	291.56268	0	5.0625916						55	4	2	NaN	NaN	NaN	0.19268	1	8090	8090		25.801	16.055	1	3341.9			2650	1683	1561	1587	2061	2061					-0.05586461833445355
DVDPQSPVM	9	Unmodified						0	0	0		ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ENSG00000108602|ENST00000225740|ALDH3A1	ENSG00000108602|ENST00000225740|ALDH3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	987.445173	986.437897	2.2229	0.002195	-1.757	-0.0017349	0.46591	0.00046006	987.4433623911459	21.585	0.072226	21.571	21.547	21.619	-0.013895	300	43	1.4411188	0.024930239	1.4395994	292.6475		5.062561	-0.0069162	-0.00094233	0.0019112	NaN	25.801	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4763.2			2651	1683	1561	1587							-0.05586461833445355
DVESYDPVL	9	Unmodified	_DVESYDPVL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4833329260998	1	1036.48333	1035.47606	1.4462	0.0014989	-1.9202	-0.0019902	-0.47402	-0.00049131	1036.4840768680174	26.94	0.096487	26.94	26.891	26.988	0	195	115	1.5033154	0.06745255	1.5033154	305.07846	0	13.688629						290	5	3	NaN	NaN	NaN	0.055351	1	9999	9999		44.638	21.304	1	59021			2652	5678	1562	1588	2062	2062					-0.040262526471451565
DVESYDPVL	9	Unmodified	_DVESYDPVL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4833329260998	1	1036.48333	1035.47606	1.0799	0.0011193	2.2214	0.0023024	3.3013	0.0034218	1036.485762641406	26.939	0.096519	26.928	26.88	26.976	-0.010645	192	91	1.5050892	0.053229332	1.5035697	305.4384	0	10.802216						166	5	2	NaN	NaN	NaN	0.019103	1	9791	9791		73.133	52.578	1	36544			2653	5678	1562	1588	2063	2063					-0.040262526471451565
DVFADEFIF	9	Unmodified	_DVFADEFIF_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5091537460999	1	1102.50915	1101.50188	1.176	0.0012966	0.81981	0.00090385	1.9959	0.0022004	1102.5097188154077	37.386	0.26473	37.386	37.314	37.578	0	78	73	1.5723488	0.0423944	1.5723488	318.83633	0	8.596619						521	12	4	NaN	NaN	NaN	0.025843	1	12893	12893		64.55	32.989	1	78000			2654	2116	1563	1589	2064	2064					-0.04481358404859748
DVFADEFIF	9	Unmodified	_DVFADEFIF_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.5091537460999	1	1102.50915	1101.50188	1.3729	0.0015137	0.41237	0.00045465	1.7853	0.0019683	1102.508777499714	37.383	0.24068	37.386	37.314	37.555	0.0028229	75	70	1.5741152	0.04062581	1.5725957	319.1945	0	8.237976						445	11	4	NaN	NaN	NaN	0.10956	1	12556	12556		34.439	1.986	1	60982			2655	2116	1563	1589	2065	2065					-0.04481358404859748
DVFDRQFRP	9	Unmodified	_DVFDRQFRP_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2989044258501	2	590.298904	1178.58326	1.7415	0.001028	-3.4165	-0.0020167	-1.675	-0.00098875	591.3004315156485	28.074	0.096529	28.074	28.05	28.146	0	1167	76	0.91857195	0.04592544	0.91857195	372.2253	0	18.609985						158	5	3	NaN	NaN	NaN	0.49672	1	15785	15785		9.746	2.8828	1	33293	+		2656	10018	1564	1590	2066	2066					0.0011076207774749491
DVFDRQFRP	9	Unmodified						0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.298904	1178.58326	1.7415	0.001028	-3.4165	-0.0020167	-1.675	-0.00098875	591.3004315156485	28.074	0.096529	28.074	28.05	28.146	0	1167	76	0.91857195	0.04592544	0.91857195	372.2253		18.609985	0	0	0	NaN	9.746	158	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33293	+		2657	10018	1564	1590							0.0011076207774749491
DVFIDSGGVRR	11	Unmodified	_DVFIDSGGVRR_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8227436629	2	610.822744	1219.63093	2.0921	0.0012779	-4.8927	-0.0029886	-2.8005	-0.0017106	610.8215873366925	17.402	0.024012	17.388	17.364	17.388	-0.013569	1170	31	0.91673553	0.018363178	0.9152161	371.33646	0	7.438263						37	2	2	NaN	NaN	NaN	0.6875	1	16289	16289		8.2775	0.68994	1	2857.7			2658	4376	1565	1591	2067	2067					0.029904162779530452
DVFPGPSFR	9	Unmodified	_DVFPGPSFR_					0	0	0		SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.25871663285005	2	511.258717	1020.50288	2.2227	0.0011364	-2.3356	-0.0011941	-0.11286	-5.7699E-05	511.25795028196995	23.031	0.12026	23.031	22.983	23.103	0	1329	76	0.81912065	0.04613936	0.81912065	332.51965	0	18.730164						101	6	3	NaN	NaN	NaN	0.35794	1	9383	9383		15.463	0	1	7099.2			2659	670	1566	1592	2068	2068					-0.006550992452844184
DVFPNQPGGKR	11	Unmodified	_DVFPNQPGGKR_					0	0	0		nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF	nc|ENSG00000099958|Q96Q80-5|DERL3	nc|ENSG00000099958|Q96Q80-5|DERL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.81746131975	2	607.817461	1213.62037	1.0556	0.00064159	-1.2338	-0.00074994	-0.17826	-0.00010835	607.8163394468469	14.477	0.14383	14.477	14.429	14.573	0	1218	40	0.8873258	0.023917377	0.8873258	359.44354	0	9.688599						85	7	2	NaN	NaN	NaN	0.20314	1	16822	16822		30.035	19.675	1	6733.8			2660	1177	1567	1593	2069	2069					0.02210433623508834
DVFPNQPGGKR	11	Unmodified	_DVFPNQPGGKR_					0	0	0		nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF	nc|ENSG00000099958|Q96Q80-5|DERL3	nc|ENSG00000099958|Q96Q80-5|DERL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.81746131975	2	607.817461	1213.62037	1.1509	0.00069952	-2.1182	-0.0012875	-0.96735	-0.00058797	607.8162181740353	14.476	0.11981	14.465	14.441	14.561	-0.011218	1215	37	0.8891654	0.022073984	0.88764596	360.18875	0	8.941864						78	6	2	NaN	NaN	NaN	0.62211	1	16154	16154		12.57	4.3249	1	5271.5			2661	1177	1567	1593	2070	2070					0.02210433623508834
DVFRDPALK	9	Unmodified	_DVFRDPALK_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	354.19770788283324	3	354.197708	1059.57129	2.2008	0.00077952	-3.2789	-0.0011614	-1.0781	-0.00038187	354.19658438796847	18.245	0.071875	18.245	18.221	18.292	0	1509	37	0.70793515	0.022309542	0.70793515	430.8595	0	13.577911						74	4	2	NaN	NaN	NaN	0.17328	1	11077	11077		29.547	21.193	1	9090.3			2662	2709	1568	1594	2071	2071					0.04389145334539535
DVFRDPALK	9	Unmodified	_DVFRDPALK_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.79292359095	2	530.792924	1059.57129	2.4775	0.0013151	-2.828	-0.0015011	-0.35051	-0.00018605	530.791178217499	18.245	0.19184	18.245	18.173	18.364	0	1287	55	0.8449601	0.033189833	0.8449601	342.84076	0	13.466705						349	9	4	NaN	NaN	NaN	0.017836	1	11079	11079		74.737	47.441	1	98277			2663	2709	1568	1594	2072	2072					0.04389145334539535
DVFRDPALK	9	Unmodified	_DVFRDPALK_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.79292359095	2	530.792924	1059.57129	1.818	0.00096501	-1.6344	-0.00086751	0.18368	9.7496E-05	530.7920430792706	18.29	0.21597	18.276	18.18	18.396	-0.01395	1287	58	0.8449601	0.03503555	0.84344065	342.84076	0	14.215637						314	10	3	NaN	NaN	NaN	0.055363	1	10840	10840		44.633	24.185	1	106220			2664	2709	1568	1594	2073	2073					0.04389145334539535
DVFRDPALKR	10	Unmodified	_DVFRDPALKR_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.23141155886657	3	406.231412	1215.67241	1.4717	0.00059783	-1.3084	-0.00053153	0.16321	6.63E-05	406.23075355421383	15.846	0.19182	15.846	15.798	15.99	0	1491	43	0.7190863	0.026013732	0.7190863	436.9257	0	15.806244						283	9	4	NaN	NaN	NaN	0.068962	1	16887	16887		50.238	39.416	1	58658			2665	2709	1569	1595	2074	2074					0.07319597037235326
DVFRDPALKR	10	Unmodified	_DVFRDPALKR_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.23141155886657	3	406.231412	1215.67241	2.0033	0.00081381	-1.3572	-0.00055134	0.64612	0.00026248	406.230909058271	15.939	0.19155	15.927	15.855	16.047	-0.012611	1491	40	0.7190863	0.024154305	0.71756685	436.9257	0	14.676453						287	9	4	NaN	NaN	NaN	0.043823	1	16214	16214		53.852	39.675	1	64537			2666	2709	1569	1595	2075	2075					0.07319597037235326
DVFSYEVVM	9	Oxidation (M)	_DVFSYEVVM(Oxidation (M))_		DVFSYEVVM(1)		DVFSYEVVM(100)	0	0	1		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.4917891224	1	1104.49179	1103.48451	1.2362	0.0013653	1.6965	0.0018738	2.9327	0.0032391	1104.49317920235	27.301	0.14478	27.291	27.242	27.387	-0.010126	90	100	1.5652816	0.05835712	1.5637622	317.39618	0	11.833252						284	7	3	NaN	NaN	NaN	0.0040938	1	12629	12629		104.71	54.75	1	21934			2667	4380	1570	1596	2076	2076		469			-0.06309022002164966
DVFVVGTER	9	Unmodified	_DVFVVGTER_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-5|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.26928131915	2	511.269281	1020.52401	1.6428	0.00083991	-2.0659	-0.0010562	-0.42307	-0.0002163	511.26850928825206	20.453	0.16828	20.453	20.405	20.573	0	1326	64	0.8209676	0.038769722	0.8209676	333.26932	0	15.738403						223	8	4	NaN	NaN	NaN	0.059222	1	9389	9389		42.995	21.224	1	27742			2668	4944	1571	1597	2077	2077					0.0145686606357458
DVFVVGTER	9	Unmodified	_DVFVVGTER_					0	0	0		nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-5|GTF2I;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.26928131915	2	511.269281	1020.52401	1.0595	0.00054167	-1.1117	-0.00056837	-0.052226	-2.6702E-05	511.2690747573279	20.453	0.096218	20.439	20.415	20.511	-0.014143	1326	67	0.8209676	0.040618062	0.81944823	333.26932	0	16.48877						164	5	3	NaN	NaN	NaN	0.024359	1	9200	9200		66.481	39.185	1	26406			2669	4944	1571	1597	2078	2078					0.0145686606357458
DVFYPGTGR	9	Unmodified	_DVFYPGTGR_					0	0	0		nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.24834891180006	2	506.248349	1010.48214	2.1029	0.0010646	-0.14851	-7.5185E-05	1.9543	0.00098939	506.24780699623227	18.82	0.096041	18.82	18.796	18.892	0	1350	34	0.80618626	0.020332098	0.80618626	327.31213	0	8.254852						66	5	2	NaN	NaN	NaN	0.33202	1	8996	8996		16.858	8.568	1	6666.6			2670	377	1572	1598	2079	2079					-0.02267689624943614
DVFYPGTGR	9	Unmodified						0	0	0		nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.248349	1010.48214	1.6064	0.00081326	-1.5544	-0.00078689	0.052075	2.6363E-05	506.24727459479806	18.842	0.16817	18.828	18.78	18.948	-0.014059	1347	43	0.8080346	0.025873005	0.8065152	328.0626		10.504456	0.0036596	-0.00057647	0.00016447	NaN	16.858	99	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8857			2671	377	1572	1598							-0.02267689624943614
DVHASTSQ	8	Unmodified	_DVHASTSQ_					0	0	0		ENST00000421439.1_1_8:100710014-100710242:+|nuORF	ENST00000421439.1_1_8:100710014-100710242:+|nuORF	ENST00000421439.1_1_8:100710014-100710242:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.3795365566001	1	844.379537	843.37226	0.84673	0.00071496	-9.5727	-0.008083	-8.726	-0.007368	844.3715620505116	29.521	0.21715	29.514	29.393	29.61	-0.0070648	483	58	1.3321642	0.034038067	1.3306447	271.15363	0	6.9282227						149	10	2	NaN	NaN	NaN	0.77489	1	5175	5175		12.588	1.0394	1	10959			2672	6915	1573	1599	2080	2080					-0.05569114964134769
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.251422917	2	538.251423	1074.48829	2.2815	0.001228	-1.4656	-0.00078888	0.81587	0.00043914	538.2502764298465	20.742	0.31325	20.742	20.646	20.959	0	1272	277	0.854179	0.16980314	0.854179	346.51956	0	68.88495						1124	14	4	NaN	NaN	NaN	0.032409	1	11739	11739		73.133	38.694	1	1893900			2673	2444	1574	1600	2081	2081					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.17004076686663	3	359.170041	1074.48829	2.003	0.00071943	-0.98784	-0.0003548	1.0152	0.00036463	359.16989300385706	20.742	0.31323	20.742	20.67	20.983	0	1503	85	0.711653	0.052050054	0.711653	433.04523	0	31.67273						758	14	5	NaN	NaN	NaN	0.04743	1	11740	11740		48.002	28.41	1	870680			2674	2444	1574	1600	2082	2082					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.4955693673999	1	1075.49557	1074.48829	1.3757	0.0014796	0.2052	0.0002207	1.5809	0.0017003	1075.4948668290367	20.742	0.048237	20.742	20.718	20.766	0	195	43	1.5033154	0.024832487	1.5033154	304.9328	0	5.037018						62	3	2	NaN	NaN	NaN	0.040769	1	11741	11741		67.154	39.365	1	5596.2			2675	2444	1574	1600	2083	2083					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.17004076686663	3	359.170041	1074.48829	2.5777	0.00092582	-4.0688	-0.0014614	-1.4911	-0.00053557	359.16828995011787	21.248	0.072233	21.234	21.186	21.258	-0.014004	1506	31	0.70979416	0.018589258	0.7082747	431.91412	0	11.311676						39	4	2	NaN	NaN	NaN	0.56377	1	11432	11432		6.9844	4.3849	1	2480.6			2676	2444	1574	1600	2084	2084					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.4955693673999	1	1075.49557	1074.48829	1.4489	0.0015583	-0.9301	-0.0010003	0.51883	0.000558	1075.4951558519006	20.742	0.072304	20.728	20.704	20.776	-0.014088	192	46	1.5050892	0.026604772	1.5035697	305.29257	0	5.396515						77	4	2	NaN	NaN	NaN	0.25424	1	11434	11434		30.61	20.005	1	7397			2677	2444	1574	1600	2085	2085					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.251422917	2	538.251423	1074.48829	1.9072	0.0010266	-1.0442	-0.00056204	0.86302	0.00046452	538.2506724187309	20.742	0.57796	20.728	20.656	21.234	-0.014088	1272	229	0.854179	0.14033264	0.8526596	346.51956	0	56.929504						1350	25	6	NaN	NaN	NaN	0.024359	1	11435	11435		87.021	53.595	1	1946200			2678	2444	1574	1600	2086	2086					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.17004076686663	3	359.170041	1074.48829	2.1105	0.00075802	-0.68626	-0.00024648	1.4242	0.00051154	359.16998254681386	20.742	0.31302	20.728	20.68	20.993	-0.014088	1503	88	0.711653	0.053900123	0.71013355	433.04523	0	32.798584						765	14	5	NaN	NaN	NaN	0.04743	1	11437	11437		48.002	20.706	1	842820			2679	2444	1574	1600	2087	2087					-0.04597171393447752
DVHGPDWHL	9	Unmodified	_DVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.251422917	2	538.251423	1074.48829	1.2212	0.00065732	2.1708	0.0011685	3.392	0.0018258	538.2527892129291	21.826	0.14444	21.812	21.764	21.908	-0.013895	1281	46	0.84864825	0.027656734	0.8471288	344.27585	0	11.219635						118	7	2	NaN	NaN	NaN	0.44834	1	11438	11438		13.003	6.9125	1	12042			2680	2444	1574	1600	2088	2088					-0.04597171393447752
DVHGPDWHL	9	Unmodified						0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.251423	1074.48829	1.9374	0.0010428	-2.8574	-0.001538	-0.92	-0.00049519	538.2508072909458	21.874	0.072332	21.874	21.85	21.922	0	1278	37	0.85049206	0.022124112	0.85049206	345.02383		8.97522	0.031092	-0.0023601	0.0016816	NaN	13.003	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5666.4			2681	2444	1574	1600							-0.04597171393447752
DVHGPDWNL	9	Unmodified	_DVHGPDWNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7434307094	2	526.743431	1051.47231	2.288	0.0012052	-2.3882	-0.001258	-0.1002	-5.2779E-05	526.7424023221711	23.417	0.3375	23.417	23.369	23.706	0	1296	97	0.8394264	0.05905527	0.8394264	340.62912	0	23.963898						815	15	5	NaN	NaN	NaN	0.060816	1	10676	10676		42.318	11.707	1	532040			2682	2444	1575	1601	2089	2089					-0.051368776303661434
DVHIMQHHVL	10	Unmodified	_DVHIMQHHVL_					0	0	0		SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.81640707475	2	614.816407	1227.61826	1.035	0.00063636	1.6388	0.0010075	2.6738	0.0016439	614.8175630068982	15.678	0.12003	15.678	15.654	15.774	0	1206	55	0.894683	0.033093095	0.894683	362.37738	0	13.403839						110	6	2	NaN	NaN	NaN	0.69717	1	17188	17188		8.2448	0.65722	1	11336			2683	1000	1576	1602	2090	2090					0.013556816140408046
DVHSLMEFN	9	Unmodified	_DVHSLMEFN_					0	0	0			REV__ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant	REV__ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.49905811760004	3	364.499058	1090.47534	1.7689	0.00064475	5.6715	0.0020672	7.4403	0.002712	364.5014025397573	19.06	0.11987	19.06	19.012	19.132	0	1509	43	0.70793515	0.026027799	0.70793515	430.70303	0	15.835175						135	6	3	NaN	NaN	NaN	0.21199	1	12409	12409		17.198	0	1	18877	+		2684	9958	1577	1603	2091	2091					-0.06627370567821345
DVIGNEILR	9	Unmodified	_DVIGNEILR_					0	0	0		ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.790380902	2	514.790381	1027.56621	1.9957	0.0010274	-2.9386	-0.0015128	-0.9429	-0.0004854	514.7888745968571	22.356	0.07234	22.356	22.332	22.405	0	1251	40	0.8670771	0.023945808	0.8670771	351.95523	0	9.719849						106	4	4	NaN	NaN	NaN	0.66035	1	9686	9686		2.5994	0.13793	1	9546.1			2685	1523	1578	1604	2092	2092					0.05352841471949432
DVIKPGTVKR	10	Unmodified	_DVIKPGTVKR_					0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	371.56439068136666	3	371.564391	1111.67134	2.2801	0.0008472	-3.284	-0.0012202	-1.0039	-0.00037302	371.56399158613755	12.27	0.095967	12.261	12.213	12.309	-0.0088415	1443	28	0.7487872	0.016694963	0.7472678	455.449	0	10.154694						38	5	2	NaN	NaN	NaN	0.6772	1	12978	12978		7.8039	2.1098	1	2665.6			2686	3068	1579	1605	2093	2093					0.11997382668369028
DVILIGTTR	9	Unmodified	_DVILIGTTR_					0	0	0		ENST00000554111.1_1_14:100376608-100381157:+|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	ENST00000554111.1_1_14:100376608-100381157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.2952991044	2	494.295299	986.576045	0.98289	0.00048584	-3.5946	-0.0017768	-2.6117	-0.001291	494.2936234561947	21.946	0.096354	21.932	21.908	22.004	-0.013895	1341	34	0.8117308	0.020327687	0.81021136	329.6705	0	8.255737						77	5	2	NaN	NaN	NaN	0.29341	1	7945	7945		19.336	8.1661	1	8826.4			2687	706	1580	1606	2094	2094					0.08222029477326487
DVIPEDHRL	9	Unmodified	_DVIPEDHRL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2854626996001	2	547.285463	1092.55637	1.8416	0.0010079	-2.1808	-0.0011935	-0.33919	-0.00018563	547.2843140346131	17.381	0.19181	17.381	17.285	17.477	0	1206	118	0.894683	0.07179868	0.894683	362.87503	0	29.12088						426	9	4	NaN	NaN	NaN	0.03618	1	12507	12507		52.78	26.665	1	85489			2688	6161	1581	1607	2095	2095					0.01379653466574382
DVIPEDHRL	9	Unmodified	_DVIPEDHRL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.1927339552667	3	365.192734	1092.55637	1.8453	0.00067388	-1.7613	-0.00064323	0.083937	3.0653E-05	365.1920543966085	17.381	0.14394	17.381	17.333	17.477	0	1479	37	0.72651637	0.022285342	0.72651637	441.99728	0	13.557953						134	7	3	NaN	NaN	NaN	0.074859	1	12508	12508		28.495	15.926	1	15723			2689	6161	1581	1607	2096	2096					0.01379653466574382
DVIPEDHRL	9	Unmodified	_DVIPEDHRL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.1927339552667	3	365.192734	1092.55637	1.9645	0.00071741	-0.54457	-0.00019887	1.4199	0.00051854	365.1922815433634	17.402	0.14401	17.388	17.34	17.484	-0.013569	1479	52	0.72651637	0.031579494	0.7249969	441.99728	0	19.21228						132	7	3	NaN	NaN	NaN	0.048656	1	12193	12193		41.839	14.792	1	16617			2690	6161	1581	1607	2097	2097					0.01379653466574382
DVIPEDHRL	9	Unmodified						0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440673-145441098:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.285463	1092.55637	1.8979	0.0010387	-4.8571	-0.0026582	-2.9592	-0.0016195	547.2841855729112	17.402	0.16799	17.388	17.316	17.484	-0.013569	1209	133	0.892844	0.08100808	0.8913246	362.12918		32.85611	0.0035565	-0.0023593	-0.0016792	NaN	52.78	563	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113470			2691	6161	1581	1607							0.01379653466574382
DVISVEKTVKR	11	Unmodified	_DVISVEKTVKR_					0	0	0		ENSG00000132323|ENST00000254654|ILKAP	ENSG00000132323|ENST00000254654|ILKAP	ENSG00000132323|ENST00000254654|ILKAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.25399329693334	3	425.253993	1272.74015	1.8178	0.00077302	-2.9353	-0.0012483	-1.1176	-0.00047525	425.2517789854854	14.884	0.02401	14.872	14.872	14.896	-0.011737	1428	22	0.7580582	0.012976527	0.75653875	460.37393	0	7.8807373						28	2	2	NaN	NaN	NaN	0.77613	1	17468	17468		0.70822	0.076493	1	2384.7			2692	2748	1582	1608	2098	2098					0.1146900217743223
DVKTFLEAL	9	Unmodified	_DVKTFLEAL_					0	0	0		nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10;nc|ENSG00000003400|Q92851-7|CASP10;nc|ENSG00000003400|Q92851-3|CASP10;ENST00000460140.5_1_2:202050494-202070750:+|nuORF	nc|ENSG00000003400|Q92851-6|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5720883539	1	1035.57209	1034.56481	2.392	0.0024771	-2.1317	-0.0022076	0.26029	0.00026955	1035.5694818678173	23.658	0.048162	23.645	23.621	23.669	-0.013048	81	46	1.5705823	0.026500702	1.5690628	318.73306	0	5.3780518						54	3	2	NaN	NaN	NaN	0.25448	1	9776	9776		21.835	2.6714	1	3384.7			2693	301	1583	1609	2099	2099					0.04891207383184337
DVLGKKLNT	9	Unmodified	_DVLGKKLNT_					0	0	0		ENST00000585133.1_1_17:29162236-29196669:+|nuORF;ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5;ENSG00000176208|ENST00000321990|ATAD5	ENST00000585133.1_1_17:29162236-29196669:+|nuORF	ENST00000585133.1_1_17:29162236-29196669:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.29529910440004	2	494.295299	986.576045	1.7964	0.00088794	-3.2441	-0.0016036	-1.4478	-0.00071562	494.29399498751417	21.946	0.072292	21.946	21.922	21.994	0	1344	37	0.8098828	0.022176862	0.8098828	328.91995	0	9.006744						63	4	2	NaN	NaN	NaN	0.38313	1	8111	8111		14.425	0.96197	1	8095.5			2694	49	1584	1610	2100	2100					0.08222029477337855
DVLNIQGVQR	10	Unmodified	_DVLNIQGVQR_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3198368332	2	571.319837	1140.62512	1.4329	0.00081863	-2.3643	-0.0013508	-0.93146	-0.00053216	571.3181269779392	20.814	0.07226	20.814	20.79	20.862	0	1224	37	0.883646	0.022081137	0.883646	358.2104	0	8.951202						61	4	2	NaN	NaN	NaN	0.73444	1	14480	14480		5.6942	0.50528	1	7163.4			2695	5678;276	1585	1611	2101	2101					0.06043317766284417
DVLNIQGVQR	10	Unmodified						0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.319837	1140.62512	1.0072	0.00057541	-0.73337	-0.00041899	0.27379	0.00015642	571.3190814792251	20.839	0.048073	20.825	20.801	20.849	-0.014086	1227	34	0.88180584	0.02024436	0.8802864	357.4644		8.206604	0.0051108	0.00088751	-0.0016798	NaN	5.6942	60	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5932.9			2696	5678;276	1585	1611							0.06043317766284417
DVMEEVRG	8	Unmodified	_DVMEEVRG_					0	0	0			REV__ENST00000468435.6_1_9:6506198-6506309:+|nuORF	REV__ENST00000468435.6_1_9:6506198-6506309:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4298575676002	1	934.429858	933.422581	0.87547	0.00081807	-10.419	-0.0097359	-9.5436	-0.0089178	934.4198577680123	31.308	0.072392	31.308	31.284	31.356	0	399	43	1.382264	0.025015235	1.382264	280.91547	0	5.0838013						83	4	3	NaN	NaN	NaN	0.76406	1	6677	6677		14.042	1.4537	1	5125.4	+		2697	12316	1586	1612	2102	2102					-0.04679328630629698
DVMEEVRG	8	Unmodified						0	0	0			REV__ENST00000468435.6_1_9:6506198-6506309:+|nuORF	REV__ENST00000468435.6_1_9:6506198-6506309:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.429858	933.422581	0.87547	0.00081807	-10.419	-0.0097359	-9.5436	-0.0089178	934.4198577680123	31.308	0.072392	31.308	31.284	31.356	0	399	43	1.382264	0.025015235	1.382264	280.91547		5.0838013	0.0030425	0.00050451	0.00075972	NaN	14.042	83	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5125.4	+		2698	12316	1586	1612							-0.04679328630629698
DVNFEFPEFQL	11	Unmodified	_DVNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8246176498501	2	692.824618	1383.63468	1.3538	0.00093792	-2.1469	-0.0014874	-0.79311	-0.00054948	692.8229768895555	37.29	0.26457	37.29	37.217	37.482	0	1119	79	0.9479278	0.047641516	0.9479278	383.46158	0	19.272247						733	12	5	NaN	NaN	NaN	1.2419999999999998E-28	1	19920	19920		161.73	112.34	1	224630			2699	4814	1587	1613	2103	2103					-0.041789587388393556
DVNFEFPEFQL	11	Unmodified	_DVNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8246176498501	2	692.824618	1383.63468	1.0934	0.00075755	-1.5967	-0.0011062	-0.50328	-0.00034869	692.8235209336083	37.287	0.19267	37.289	37.217	37.41	0.0022507	1116	76	0.94976085	0.045806646	0.9482414	384.2031	0	18.529999						658	9	5	NaN	NaN	NaN	0.00024842	1	18987	18987		80.24	54.439	1	192500			2700	4814	1587	1613	2104	2104					-0.041789587388393556
DVPDGLNLGAV	11	Unmodified	_DVPDGLNLGAV_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5524155442997	1	1069.55242	1068.54514	1.2967	0.0013869	-2.0367	-0.0021783	-0.74001	-0.00079147	1069.5506203694667	22.476	0.096445	22.462	22.438	22.535	-0.013733	144	43	1.533442	0.024787784	1.5319226	311.0656	0	5.02829						79	5	2	NaN	NaN	NaN	0.6085	1	11214	11214		13.463	0.46021	1	6335.5			2701	5881	1588	1614	2105	2105					0.013608313724034815
DVPDGLNLGAV	11	Unmodified						0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1069.55242	1068.54514	1.9054	0.0020379	-1.9881	-0.0021263	-0.082687	-8.8439E-05	1069.550037273768	22.477	0.072247	22.477	22.453	22.525	0	144	46	1.533442	0.026562572	1.533442	311.0656		5.388336	0.0072005	1.7345E-05	0.00075972	NaN	13.463	94	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6517.2			2702	5881	1588	1614							0.013608313724034815
DVPVDLIVI	9	Unmodified	_DVPVDLIVI_					0	0	0		ENST00000377242.7_1_10:20466301-20506418:+|nuORF	ENST00000377242.7_1_10:20466301-20506418:+|nuORF	ENST00000377242.7_1_10:20466301-20506418:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.79460061264996	2	491.794601	981.574648	1.2354	0.00060759	-0.57555	-0.00028305	0.65989	0.00032453	491.7934101151818	34.155	0.096432	34.155	34.107	34.203	0	1320	37	0.824661	0.022157669	0.824661	334.9453	0	8.999603						78	5	2	NaN	NaN	NaN	0.31737	1	7950	7950		17.799	7.194	1	6371.1			2703	6706	1589	1615	2106	2106					0.08312395388554705
DVQGPDWHL	9	Unmodified	_DVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7512557415	2	533.751256	1065.48796	1.8649	0.00099537	-2.1679	-0.0011571	-0.30305	-0.00016176	533.7498054462627	24.019	0.16888	24.019	23.995	24.164	0	1296	61	0.8394264	0.03689754	0.8394264	340.57117	0	14.970032						175	8	2	NaN	NaN	NaN	0.084037	1	11356	11356		38.131	13.569	1	59646			2704	2444	1590	1616	2107	2107					-0.04216591113299728
DVQGPDWHL	9	Unmodified	_DVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7512557415	2	533.751256	1065.48796	1.0695	0.00057086	-1.6529	-0.00088226	-0.58341	-0.0003114	533.7500912052208	24.019	0.193	24.006	23.958	24.151	-0.012747	1299	61	0.8375814	0.036893547	0.83606195	339.82263	0	14.968414						150	9	2	NaN	NaN	NaN	0.04947	1	11095	11095		47.136	14.683	1	44232			2705	2444	1590	1616	2108	2108					-0.04216591113299728
DVRSPDVSL	9	Unmodified	_DVRSPDVSL_					0	0	0			REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5105507296001	1	987.510551	986.503274	2.4257	0.0023954	-11.906	-0.011758	-9.4808	-0.0093624	987.499211378571	23.103	0.09647	23.103	23.079	23.176	0	291	55	1.446459	0.03203273	1.446459	293.7317	0	6.5048523						93	5	2	NaN	NaN	NaN	0.31471	1	8097	8097		17.97	4.9669	1	7911.5	+		2706	8539	1591	1617	2109	2109					0.009482756839133799
DVRSPDVSL	9	Unmodified						0	0	0			REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	987.510551	986.503274	2.4257	0.0023954	-11.906	-0.011758	-9.4808	-0.0093624	987.499211378571	23.103	0.09647	23.103	23.079	23.176	0	291	55	1.446459	0.03203273	1.446459	293.7317		6.5048523	-0.005098	-0.0013056	-0.0010199	NaN	17.97	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7911.5	+		2707	8539	1591	1617							0.009482756839133799
DVSAPDVEM	9	Unmodified	_DVSAPDVEM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4135388014	1	962.413539	961.406262	1.8849	0.001814	1.788	0.0017208	3.6728	0.0035348	962.4152308668862	23.055	0.04808	23.055	23.031	23.079	0	351	52	1.4108255	0.030319095	1.4108255	286.59857	0	6.1591187						85	3	2	NaN	NaN	NaN	0.030669	1	7353	7353		58.235	26.674	1	8726.1			2708	2444	1592	1618	2110	2110					-0.07598454587400738
DVSAPDVEM	9	Unmodified						0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.413539	961.406262	1.764	0.0016977	0.17616	0.00016954	1.9401	0.0018672	962.4142101563051	23.079	0.12039	23.065	23.017	23.138	-0.013294	351	55	1.4108255	0.032104254	1.409306	286.5986		6.521759	0.0051112	-0.0008126	-0.00075972	NaN	58.235	108	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9607.4			2709	2444	1592	1618							-0.07598454587400738
DVSAPDVEM	9	Oxidation (M)	_DVSAPDVEM(Oxidation (M))_		DVSAPDVEM(1)		DVSAPDVEM(120)	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4084534235001	1	978.408453	977.401177	2.4561	0.002403	0.24245	0.00023722	2.6985	0.0026402	978.4089068284686	18.46	0.11984	18.46	18.412	18.532	0	375	73	1.3965509	0.04282856	1.3965509	283.6332	0	8.698273						152	6	2	NaN	NaN	NaN	8.7755E-05	1	7806	7806		123.66	73.825	1	12812			2710	2444	1592	1619	2111	2111		276			-0.08842758450009569
DVSAPDVEM	9	Oxidation (M)	_DVSAPDVEM(Oxidation (M))_		DVSAPDVEM(1)		DVSAPDVEM(89)	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4084534235001	1	978.408453	977.401177	2.3632	0.0023122	-0.48923	-0.00047867	1.874	0.0018335	978.4079698638286	18.434	0.096077	18.42	18.396	18.492	-0.01395	372	73	1.3983358	0.04282856	1.3968164	283.99573	0	8.698273						159	5	2	NaN	NaN	NaN	0.011206	1	7647	7647		89.256	47.471	1	13036			2711	2444	1592	1619	2112	2112		276			-0.08842758450009569
DVSGQGSGG	9	Unmodified	_DVSGQGSGG_					0	0	0		ENST00000397269.7_1_10:5979294-5979507:+|nuORF	ENST00000397269.7_1_10:5979294-5979507:+|nuORF	ENST00000397269.7_1_10:5979294-5979507:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3216873267002	1	763.321687	762.314411	1.934	0.0014763	-5.4235	-0.0041399	-3.4895	-0.0026636	763.3171824004321	23.345	0.16883	23.345	23.296	23.465	0	618	88	1.2513325	0.05224204	1.2513325	255.13472	0	10.651627						216	8	2	NaN	NaN	NaN	0.64666	1	4238	4238		3.5698	0.41644	1	16033			2712	6804	1593	1620	2113	2113					-0.07625376889552626
DVSGQGSGG	9	Unmodified						0	0	0		ENST00000397269.7_1_10:5979294-5979507:+|nuORF	ENST00000397269.7_1_10:5979294-5979507:+|nuORF	ENST00000397269.7_1_10:5979294-5979507:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	763.321687	762.314411	2.0454	0.0015613	-5.6522	-0.0043144	-3.6068	-0.0027531	763.3174051623192	23.344	0.14479	23.331	23.307	23.451	-0.013294	615	91	1.2531329	0.05404055	1.2516136	255.50182		11.018356	-0.0069127	-0.00011044	0.00014052	NaN	3.5698	182	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13298			2713	6804	1593	1620							-0.07625376889552626
DVSHPIIYR	9	Unmodified	_DVSHPIIYR_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.2013408952667	3	367.201341	1098.58219	1.7041	0.00062575	-2.4796	-0.00091052	-0.77549	-0.00028476	367.20032775866247	16.278	0.16805	16.278	16.23	16.398	0	1398	34	0.77658504	0.020367384	0.77658504	472.42578	0	12.390259						106	8	2	NaN	NaN	NaN	0.23112	1	12798	12798		15.822	5.217	1	11692			2714	4649	1594	1621	2114	2114					0.03684547708849095
DVSHPIIYR	9	Unmodified	_DVSHPIIYR_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.2013408952667	3	367.201341	1098.58219	2.2316	0.00081945	-3.3194	-0.0012189	-1.0877	-0.00039942	367.20030393848555	16.299	0.11988	16.286	16.238	16.358	-0.012993	1398	37	0.77658504	0.022220135	0.7750656	472.42578	0	13.5173645						92	6	2	NaN	NaN	NaN	0.16171	1	12465	12465		19.336	10.417	1	10849			2715	4649	1594	1621	2115	2115					0.03684547708849095
DVSLGDWEF	9	Unmodified	_DVSLGDWEF_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4680172129	1	1067.46802	1066.46074	1.0491	0.0011199	0.79607	0.00084978	1.8452	0.0019697	1067.469939544653	33.842	0.19306	33.842	33.817	34.01	0	183	52	1.510409	0.030139327	1.510409	306.40088	0	6.114044						170	9	2	NaN	NaN	NaN	0.00020136	1	11386	11386		116.74	74.951	1	19526			2716	3658	1595	1622	2116	2116					-0.06983119444339536
DVSLGDWEF	9	Unmodified	_DVSLGDWEF_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.4680172129	1	1067.46802	1066.46074	0.61995	0.00066178	1.5755	0.0016818	2.1955	0.0023436	1067.4696031261878	33.84	0.14479	33.839	33.814	33.959	-0.0018463	177	55	1.5139546	0.0319072	1.5124352	307.12015	0	6.4726562						197	7	3	NaN	NaN	NaN	0.04947	1	11124	11124		47.136	27.972	1	18058			2717	3658	1595	1622	2117	2117					-0.06983119444339536
DVSSFVDPAL	10	Unmodified	_DVSSFVDPAL_					0	0	0		nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000264230|ENST00000619162|ANXA8L1;chr10:46375872-46382579|503|17.07|0.71|4.58|+|ENST00000613703|ANXA8L1,ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5149674054999	1	1049.51497	1048.50769	2.3572	0.0024739	0.018378	1.9289E-05	2.3755	0.0024932	1049.5147423117062	30.029	0.12072	30.029	29.98	30.101	0	249	64	1.4713576	0.03730607	1.4713576	298.5442	0	7.5695496						162	6	3	NaN	NaN	NaN	0.00028873	1	10566	10566		97.85	60.547	1	16894			2718	6153	1596	1623	2118	2118					-0.014622598931964603
DVSSFVDPAL	10	Unmodified	_DVSSFVDPAL_					0	0	0		nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000264230|ENST00000619162|ANXA8L1;chr10:46375872-46382579|503|17.07|0.71|4.58|+|ENST00000613703|ANXA8L1,ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.5149674054999	1	1049.51497	1048.50769	1.2655	0.0013282	0.20302	0.00021307	1.4685	0.0015412	1049.514539065032	30.004	0.09656	29.997	29.973	30.07	-0.0064106	246	52	1.4731345	0.030206561	1.4716152	298.90475	0	6.1290283						152	5	3	NaN	NaN	NaN	0.000399	1	10347	10347		91.563	60.953	1	15270			2719	6153	1596	1623	2119	2119					-0.014622598931964603
DVTAQDPKL	9	Unmodified	_DVTAQDPKL_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.76128911154996	2	493.761289	985.508025	1.8538	0.00091535	-0.56796	-0.00028044	1.2859	0.00063491	493.7616230971763	17.234	0.095932	17.22	17.196	17.292	-0.013569	1320	43	0.824661	0.025850594	0.8231416	334.92685	0	10.498962						53	5	2	NaN	NaN	NaN	0.49999	1	7893	7893		9.6116	5.1986	1	3756.3			2720	1008	1597	1624	2120	2120					0.014691598266608707
DVTEYAVQR	9	Unmodified	_DVTEYAVQR_					0	0	0		ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	ENST00000331103.5_1_22:38150943-38151269:+|nuORF	ENST00000331103.5_1_22:38150943-38151269:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7696454599001	2	540.769645	1079.52474	1.6348	0.00088408	1.3363	0.00072264	2.9712	0.0016067	540.7701465632149	16.778	0.11982	16.765	16.717	16.837	-0.013294	1260	70	0.8615505	0.042393148	0.8600311	349.48935	0	17.196838						126	6	2	NaN	NaN	NaN	0.23112	1	11653	11653		23.334	14.211	1	14567			2721	1195	1598	1625	2121	2121					-0.011843392873743142
DVTEYAVQR	9	Unmodified						0	0	0		ENST00000331103.5_1_22:38150943-38151269:+|nuORF;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	ENST00000331103.5_1_22:38150943-38151269:+|nuORF	ENST00000331103.5_1_22:38150943-38151269:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.769645	1079.52474	1.7888	0.00096732	-0.34823	-0.00018831	1.4406	0.00077901	541.2710651839748	16.782	0.1439	16.782	16.734	16.877	0	1278	61	0.85049206	0.036861658	0.85049206	345.00345		14.952972	0.008257	-0.00086458	-0.0047695	NaN	23.334	165	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11454			2722	1195	1598	1625							-0.011843392873743142
DVTFFGALK	9	Unmodified	_DVTFFGALK_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.27129269185	2	499.271293	996.528032	1.3781	0.00068802	-1.8895	-0.00094336	-0.51142	-0.00025534	499.27058186985045	27.012	0.12065	27.012	26.964	27.084	0	1326	79	0.8209676	0.04798758	0.8209676	333.3761	0	19.486633						211	6	4	NaN	NaN	NaN	0.25548	1	8445	8445		21.771	10.223	1	30795			2723	1380	1599	1626	2122	2122					0.02962955557291025
DVTLDPWPPG	10	Unmodified	_DVTLDPWPPG_					0	0	0		ENST00000357585.3_2_17:71161213-71165440:+|nuORF	ENST00000357585.3_2_17:71161213-71165440:+|nuORF	ENST00000357585.3_2_17:71161213-71165440:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.76911414365	2	548.769114	1095.52368	1.2831	0.00070412	-6.8168	-0.0037409	-5.5338	-0.0030368	548.7653722356092	22.621	0.09647	22.607	22.559	22.655	-0.01354	1254	103	0.8652351	0.06263775	0.86371565	350.91943	0	25.404419						170	5	4	NaN	NaN	NaN	0.64158	1	12318	12318		12.049	0.87837	1	20945			2724	6577	1600	1627	2123	2123					-0.020265536563101705
DVTSVDPIA	9	Unmodified	_DVTSVDPIA_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4622035535001	1	916.462204	915.454927	1.7118	0.0015688	0.15424	0.00014135	1.866	0.0017102	916.4619712881387	23.827	0.096323	23.827	23.803	23.899	0	396	58	1.3840506	0.03394735	1.3840506	281.35876	0	6.901062						127	5	3	NaN	NaN	NaN	0.023828	1	6329	6329		67.154	29.852	1	12541			2725	7933	1601	1628	2124	2124					-0.0061821795599144025
DVTSVDPIA	9	Unmodified	_DVTSVDPIA_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4622035535001	1	916.462204	915.454927	1.7817	0.0016329	0.84298	0.00077256	2.6247	0.0024055	916.4627804083506	23.826	0.072309	23.813	23.789	23.861	-0.013048	393	52	1.3858368	0.030364394	1.3843174	281.7219	0	6.1726685						133	4	3	NaN	NaN	NaN	0.0094682	1	6212	6212		93.472	40.848	1	11889			2726	7933	1601	1628	2125	2125					-0.0061821795599144025
DVVSSSSS	8	Unmodified	_DVVSSSSS_					0	0	0			REV__ENST00000544670.5_1_16:19576218-19584460:+|nuORF	REV__ENST00000544670.5_1_16:19576218-19584460:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3417540668001	1	767.341754	766.334478	1.797	0.0013789	-0.30174	-0.00023153	1.4953	0.0011474	767.3415447067973	41.665	0.048157	41.673	41.673	41.721	0.0082588	663	31	1.2243022	0.018034816	1.2227827	249.60031	0	3.6767578						39	3	2	NaN	NaN	NaN	0.84727	1	4225	4225		1.2418	0	1	2994	+		2727	8921	1602	1629	2126	2126					-0.05803625949602065
DVWLSVFL	8	Unmodified	_DVWLSVFL_					0	0	0			REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5294952577002	1	978.529495	977.522219	1.5604	0.0015269	0.64056	0.00062681	2.201	0.0021537	978.5292703295854	37.07	0.12045	37.072	37.048	37.169	0.0022469	231	49	1.4820169	0.028416157	1.4804975	300.99045	0	5.771179						107	6	2	NaN	NaN	NaN	0.40747	1	7661	7661		36.036	3.5836	1	8187.1	+		2728	11660	1603	1630	2127	2127					0.03255857045621724
DVYNGRVIEDK	11	Unmodified	_DVYNGRVIEDK_					0	0	0			REV__tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	REV__tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.3331411736999	2	654.333141	1306.65173	1.5986	0.001046	-5.1591	-0.0033757	-3.5605	-0.0023297	654.3299100160763	15.004	0.024035	14.992	14.968	14.992	-0.011738	1101	40	0.95892316	0.02381432	0.9574037	388.13556	0	9.63913						42	2	2	NaN	NaN	NaN	0.75376	1	18047	18047		3.9281	1.3287	1	2591	+		2729	13432	1604	1631	2128	2128					0.01066961866922611
DVYPEIIER	9	Unmodified	_DVYPEIIER_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2954960696501	2	567.295496	1132.57644	2.0887	0.0011849	-4.4111	-0.0025024	-2.3225	-0.0013175	567.2927894122527	22.356	0.12044	22.356	22.356	22.477	0	1239	85	0.87444305	0.05153382	0.87444305	354.5098	0	20.892426						325	6	3	NaN	NaN	NaN	0.5168	1	14188	14188		8.9191	0.67428	1	106000			2730	1373	1605	1632	2129	2129					0.015454044065336348
DVYPEIIER	9	Unmodified	_DVYPEIIER_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2954960696501	2	567.295496	1132.57644	1.2461	0.00070691	-3.1301	-0.0017757	-1.884	-0.0010688	567.2936319437305	22.356	0.1684	22.342	22.318	22.486	-0.013731	1239	82	0.87444305	0.049690664	0.8729236	354.5098	0	20.145203						297	8	3	NaN	NaN	NaN	0.097143	1	13739	13739		36.235	19.651	1	107400			2731	1373	1605	1632	2130	2130					0.015454044065336348
DVYSDLNTQR	10	Unmodified	_DVYSDLNTQR_					0	0	0		ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.78856649455	2	605.788566	1209.56258	1.8542	0.0011233	-0.58079	-0.00035184	1.2734	0.00077142	605.7879791234575	17.981	0.28788	17.981	17.957	18.245	0	1194	79	0.902037	0.047780514	0.902037	365.41666	0	19.355957						281	13	3	NaN	NaN	NaN	0.080496	1	16717	16717		48.65	31.792	1	41565			2732	413	1606	1633	2131	2131					-0.033818730925759155
DVYSDLNTQR	10	Unmodified	_DVYSDLNTQR_					0	0	0		ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.78856649455	2	605.788566	1209.56258	1.5551	0.00094207	-0.82309	-0.00049862	0.73202	0.00044345	605.7878742687303	18.002	0.24006	17.988	17.964	18.204	-0.013786	1194	58	0.902037	0.034929693	0.9005176	365.41666	0	14.150085						283	11	4	NaN	NaN	NaN	0.019815	1	16041	16041		63.765	33.729	1	42621			2733	413	1606	1633	2132	2132					-0.033818730925759155
DVYTDQVIKR	10	Unmodified	_DVYTDQVIKR_					0	0	0		ENSG00000164941|ENST00000523731|INTS8	ENSG00000164941|ENST00000523731|INTS8	ENSG00000164941|ENST00000523731|INTS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.8327770329499	2	618.832777	1235.651	2.0718	0.0012821	-2.0946	-0.0012962	-0.02281	-1.4115E-05	618.8302500045193	16.611	0.071981	16.598	16.574	16.645	-0.012993	1131	25	0.94059354	0.014671564	0.93907416	380.94522	0	5.942047						42	4	2	NaN	NaN	NaN	0.73114	1	16692	16692		5.9198	1.6096	1	3048.5			2734	4357	1607	1634	2133	2133					0.042601672178761874
DVYTDWIM	8	Unmodified	_DVYTDWIM_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.4550096855999	1	1042.45501	1041.44773	0.9118	0.00095052	1.2348	0.0012872	2.1466	0.0022378	1042.4563655817217	33.383	0.19307	33.383	33.335	33.528	0	162	70	1.5228153	0.040755033	1.5228153	309.0124	0	8.270081						173	9	3	NaN	NaN	NaN	0.45125	1	10257	10257		33.698	13.143	1	19434			2735	4731;8112	1608	1635	2134	2134					-0.07133273828071651
DVYTDWIM	8	Unmodified	_DVYTDWIM_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.4550096855999	1	1042.45501	1041.44773	0.6903	0.00071961	1.5503	0.0016161	2.2406	0.0023357	1042.4568954766548	33.406	0.16891	33.404	33.356	33.525	-0.0018501	162	64	1.5228153	0.037207246	1.5212959	309.0124	0	7.5501404						198	8	2	NaN	NaN	NaN	0.14214	1	10048	10048		55.947	39.531	1	21354			2736	4731;8112	1608	1635	2135	2135					-0.07133273828071651
DVYTDWIM	8	Oxidation (M)	_DVYTDWIM(Oxidation (M))_		DVYTDWIM(1)		DVYTDWIM(68)	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.4499243076998	1	1058.44992	1057.44265	1.813	0.001919	1.5638	0.0016552	3.3769	0.0035742	1058.4520941267933	29.015	0.096552	29.015	28.967	29.063	0	153	55	1.5281296	0.031870008	1.5281296	310.02942	0	6.465851						129	5	2	NaN	NaN	NaN	0.084194	1	10964	10964		68.108	43.546	1	21090			2737	4731;8112	1608	1636	2136	2136		503			-0.0837757769070322
DVYTDWIM	8	Oxidation (M)	_DVYTDWIM(Oxidation (M))_		DVYTDWIM(1)		DVYTDWIM(44)	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.4499243076998	1	1058.44992	1057.44265	1.3449	0.0014235	1.0327	0.0010931	2.3776	0.0025166	1058.4496979350731	29.014	0.14479	29.007	28.958	29.103	-0.0077209	147	61	1.5316714	0.035411	1.530152	310.74802	0	7.1842346						183	7	3	NaN	NaN	NaN	0.27223	1	10738	10738		44.302	25.184	1	21001			2738	4731;8112	1608	1636	2137	2137		503			-0.0837757769070322
DWCVDPNFL	9	Unmodified	_DWCVDPNFL_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.4768077601998	1	1108.47681	1107.46953	1.0343	0.0011465	6.0262	0.0066799	7.0605	0.0078264	1108.4836295542937	41.111	0.16851	41.118	41.046	41.215	0.0074959	171	43	1.5174994	0.024811387	1.51598	307.69357	0	5.0308533						96	8	2	NaN	NaN	NaN	0.51576	1	12782	12782		8.962	0.042884	1	6560.6	+		2739	11077	1609	1637	2138	2138					-0.07990469079527429
DWDTRIIRD	9	Unmodified	_DWDTRIIRD_					0	0	0			REV__nc|ENSG00000114503|P52298-3|NCBP2	REV__nc|ENSG00000114503|P52298-3|NCBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.30164408005	2	595.301644	1188.58874	1.8935	0.0011272	-2.6114	-0.0015546	-0.71788	-0.00042735	595.3001646017019	26.167	0.28961	26.167	26.046	26.336	0	957	130	1.0466307	0.07847422	1.0466307	424.0762	0	31.796356						753	13	3	NaN	NaN	NaN	0.68801	1	16116	16116		0.23014	0	1	80673	+		2740	9166	1610	1638	2139	2139					0.001984408695534512
DWDTRIIRD	9	Unmodified						0	0	0			REV__nc|ENSG00000114503|P52298-3|NCBP2	REV__nc|ENSG00000114503|P52298-3|NCBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.301644	1188.58874	1.8935	0.0011272	-2.6114	-0.0015546	-0.71788	-0.00042735	595.3001646017019	26.167	0.28961	26.167	26.046	26.336	0	957	130	1.0466307	0.07847422	1.0466307	424.0762		31.796356	-0.0063907	-0.0001465	-0.0001515	NaN	0.23014	753	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80673	+		2741	9166	1610	1638							0.001984408695534512
DWHDFVVV	8	Unmodified	_DWHDFVVV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.74544208210006	2	508.745442	1015.47633	0.59426	0.00030233	-7.8773	-0.0040075	-7.2831	-0.0037052	508.74119088737615	32.224	0.12067	32.22	32.196	32.316	-0.0037613	1320	55	0.824661	0.033232927	0.8231416	334.7908	0	13.49173						160	6	3	NaN	NaN	NaN	0.76633	1	9006	9006		13.737	2.1886	1	22305			2742	1179	1611	1639	2140	2140					-0.030787881366109104
DWLDGKHVVF	10	Unmodified	_DWLDGKHVVF_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;nc|ENSG00000171960|O43447-2|PPIH;ENSG00000171960|ENST00000304979|PPIH;ENSG00000108179|ENST00000225174|PPIF;ENST00000482751.5_1_1:40208803-40219024:+|nuORF	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.31148048485	2	608.31148	1214.60841	1.3042	0.00079337	0.096088	5.8451E-05	1.4003	0.00085182	608.3111128840086	27.833	0.12065	27.833	27.808	27.929	0	1164	106	0.9204082	0.06421244	0.9204082	372.84137	0	26.011353						263	6	3	NaN	NaN	NaN	0.60686	1	16847	16847		14.425	4.0649	1	42046			2743	954	1612	1640	2141	2141					0.009688168803222652
DWNFLESF	8	Unmodified	_DWNFLESF_					0	0	0		ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.4625379044999	1	1057.46254	1056.45526	2.2747	0.0024054	4.278	0.0045238	6.5526	0.0069292	1057.4680297594625	26.384	0.072399	26.373	26.324	26.397	-0.011137	189	43	1.5068626	0.024829865	1.5053432	305.7184	0	5.037567						57	4	2	NaN	NaN	NaN	0.69898	1	10699	10699		19.118	3.9429	1	4293.9			2744	2959	1613	1641	2142	2142					-0.07070798236145492
DWPLVALGL	9	Unmodified	_DWPLVALGL_					0	0	0		ENST00000301067.11_1_12:49414563-49414713:-|nuORF	ENST00000301067.11_1_12:49414563-49414713:-|nuORF	ENST00000301067.11_1_12:49414563-49414713:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5560443592	1	983.556044	982.548768	1.0765	0.0010588	3.6474	0.0035874	4.7239	0.0046462	983.5595845409238	35.144	0.096539	35.144	35.12	35.217	0	261	121	1.4642475	0.07105553	1.4642475	297.3604	0	14.429993						341	5	4	NaN	NaN	NaN	0.36492	1	7978	7978		15.175	0	1	47159			2745	6410	1614	1642	2143	2143					0.05679545936936847
DWSSACSC	8	Unmodified	_DWSSACSC_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.2756651115	1	858.275665	857.268389	0.4532	0.00038897	0.15761	0.00013527	0.61081	0.00052424	858.2764458574442	33.551	0.1207	33.549	33.501	33.621	-0.0018463	516	73	1.3124412	0.043052673	1.3109218	267.06964	0	8.760834						265	6	3	NaN	NaN	NaN	0.84887	1	5363	5363		0.32989	0	1	27675			2746	6183	1615	1643	2144	2144					-0.16595481387673772
DWSVLALF	8	Unmodified	_DWSVLALF_					0	0	0			REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4981951293	1	950.498195	949.490919	1.2347	0.0011736	3.3023	0.0031388	4.537	0.0043124	950.5018259933424	32.9	0.072437	32.9	32.876	32.949	0	240	52	1.4766881	0.030200124	1.4766881	300.03125	0	6.136017						99	4	3	NaN	NaN	NaN	0.62311	1	7078	7078		23.85	3.295	1	8376.2	+		2747	8880	1616	1644	2145	2145					0.014152840115116305
DWSVLALF	8	Unmodified						0	0	0			REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	950.498195	949.490919	1.2347	0.0011736	3.3023	0.0031388	4.537	0.0043124	950.5018259933424	32.9	0.072437	32.9	32.876	32.949	0	240	52	1.4766881	0.030200124	1.4766881	300.03125		6.136017	0.0017744	0.00017989	-0.0010167	NaN	23.85	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8376.2	+		2748	8880	1616	1644							0.014152840115116305
DWSVLALF	8	Unmodified						0	0	0			REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	REV__ENST00000479445.1_1_X:100656533-100662864:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	950.498195	949.490919	1.3112	0.0012463	2.7735	0.0026362	4.0846	0.0038824	950.5013543764765	32.899	0.072376	32.897	32.873	32.945	-0.0024757	234	49	1.4802408	0.028422117	1.4787214	300.75308		5.7747803	-0.0017744	-0.00032275	0.0010167	NaN	23.85	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7725	+		2749	8880	1616	1644							0.014152840115116305
DWTRKSQQY	9	Unmodified	_DWTRKSQQY_					0	0	0		SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant;ENSG00000124157|ENST00000372769|SEMG2	SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant	SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.2938190479501	2	606.293819	1210.57309	0.81724	0.00049549	-3.7789	-0.0022911	-2.9616	-0.0017956	606.2924804521518	27.615	0.14477	27.605	27.581	27.726	-0.009552	1200	58	0.89836043	0.034918368	0.896841	363.92383	0	14.145386						93	7	2	NaN	NaN	NaN	0.56671	1	16056	16056		6.8632	1.1691	1	8316.5			2750	2398	1617	1645	2146	2146					-0.02377845647470167
DWTRKSQQY	9	Unmodified						0	0	0		SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant;ENSG00000124157|ENST00000372769|SEMG2	SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant	SEMG2|p.L87F|1|0.27|ENSG00000124157|chr20:45221893-45221893|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.293819	1210.57309	1.1684	0.00070841	-5.6384	-0.0034185	-4.47	-0.0027101	606.2901878643318	27.591	0.12063	27.591	27.567	27.688	0	1200	40	0.89836043	0.023899257	0.89836043	363.92383		9.681549	-0.0068787	-0.0010117	0.00075972	NaN	6.8632	77	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7596.6			2751	2398	1617	1645							-0.02377845647470167
DWVFVREL	8	Unmodified	_DWVFVREL_					0	0	0			REV__ENST00000532518.1_1_6:133783895-133834099:+|nuORF	REV__ENST00000532518.1_1_6:133783895-133834099:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2821917291501	2	532.282192	1062.54983	2.0172	0.0010737	-3.7809	-0.0020125	-1.7637	-0.0009388	532.2800564736539	24.816	0.26546	24.816	24.743	25.009	0	1290	121	0.84311575	0.0737074	0.84311575	342.0801	0	29.905548						871	12	3	NaN	NaN	NaN	0.67593	1	11235	11235		20.555	0	1	181910	+		2752	9119	1618	1646	2147	2147					0.021057603058579843
DWYDVKAPAMF	11	Unmodified	_DWYDVKAPAMF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000493479.1_1_4:153472952-153473506:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8104560296	2	671.810456	1341.60636	1.4348	0.00096389	-1.2929	-0.0008686	0.14185	9.5297E-05	671.8095819503959	29.739	0.12065	29.739	29.715	29.836	0	1149	55	0.92958635	0.033021748	0.92958635	376.1585	0	13.362305						157	6	3	NaN	NaN	NaN	0.0015438	1	19430	19430		77.516	52.954	1	15398			2753	3517	1619	1647	2148	2148					-0.05077979919792597
DWYDVKAPAMF	11	Unmodified	_DWYDVKAPAMF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000493479.1_1_4:153472952-153473506:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8104560296	2	671.810456	1341.60636	0.92158	0.00061913	0.48961	0.00032892	1.4112	0.00094805	671.8117981925864	29.738	0.12065	29.731	29.707	29.828	-0.0070648	1149	91	0.92958635	0.055000663	0.9280669	376.1585	0	22.256073						194	6	3	NaN	NaN	NaN	0.58731	1	18565	18565		14.854	10.125	1	14632			2754	3517	1619	1647	2149	2149					-0.05077979919792597
DWYDVKAPAMF	11	Oxidation (M)	_DWYDVKAPAM(Oxidation (M))F_		DWYDVKAPAM(1)F		DWYDVKAPAM(67)F	0	0	1		ENSG00000145425|ENST00000274065|RPS3A;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000493479.1_1_4:153472952-153473506:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.80791334065	2	679.807913	1357.60127	1.0388	0.00070615	-3.0436	-0.0020691	-2.0049	-0.0013629	679.805341363155	26.77	0.1207	26.759	26.735	26.856	-0.010645	1125	76	0.9442611	0.045826435	0.94274163	382.05078	0	18.541504						168	6	2	NaN	NaN	NaN	0.012576	1	18747	18747		66.786	40.985	1	31642			2755	3517	1619	1648	2150	2150		392			-0.06322283782424165
DWYPPLFEFH	10	Unmodified	_DWYPPLFEFH_					0	0	0			REV__nc|ENSG00000163673|Q9C098|DCLK3	REV__nc|ENSG00000163673|Q9C098|DCLK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.8766343617666	3	450.876634	1349.60807	0.70296	0.00031695	-6.0069	-0.0027084	-5.304	-0.0023914	450.87395032853993	20.935	0.26487	20.921	20.849	21.113	-0.014088	1437	55	0.7524962	0.033370078	0.75097674	456.71704	0	20.253479						244	12	4	NaN	NaN	NaN	0.72631	1	18659	18659		2.9701	0	1	25248	+		2756	10293	1620	1649	2151	2151					-0.05274602839540421
DYAELIVKF	9	Unmodified	_DYAELIVKF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.29750744235	2	549.297507	1096.58046	1.1554	0.00063468	-1.0111	-0.00055537	0.14439	7.9313E-05	550.2978927090621	29.256	0.14481	29.256	29.184	29.329	0	1230	55	0.8799654	0.03312534	0.8799654	356.8894	0	13.434692						301	7	5	NaN	NaN	NaN	0.077759	1	12707	12707		39.039	19.876	1	30030			2757	5655	1621	1650	2152	2152					0.03603493900232024
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2272791187	2	523.227279	1044.44001	1.7248	0.00090245	-2.2992	-0.001203	-0.57442	-0.00030055	523.2261295359997	23.465	0.14463	23.465	23.441	23.586	0	1347	103	0.8080346	0.06277335	0.8080346	327.91925	0	25.474884						278	7	2	NaN	NaN	NaN	0.089764	1	10379	10379		37.302	24.714	1	32904			2758	5456	1622	1651	2153	2153					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.4472817708	1	1045.44728	1044.44001	2.1121	0.002208	0.027666	2.8924E-05	2.1397	0.002237	1045.4470159573907	23.465	0.14463	23.465	23.441	23.586	0	207	61	1.496219	0.03549373	1.496219	303.60403	0	7.2022095						234	7	4	NaN	NaN	NaN	2.4698E-12	1	10380	10380		151.71	98.955	1	25050			2759	5456	1622	1651	2154	2154					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2272791187	2	523.227279	1044.44001	1.8141	0.00094918	-2.7123	-0.0014192	-0.89823	-0.00046998	523.225894475846	23.465	0.14476	23.451	23.427	23.572	-0.013294	1347	103	0.8080346	0.06277335	0.8065152	327.91925	0	25.474884						229	7	2	NaN	NaN	NaN	0.14787	1	10172	10172		28.896	14.854	1	28366			2760	5456	1622	1651	2155	2155					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.4472817708	1	1045.44728	1044.44001	1.9445	0.0020329	0.21468	0.00022444	2.1592	0.0022573	1045.4477783041475	23.465	0.16888	23.451	23.427	23.596	-0.013294	207	58	1.496219	0.03372085	1.4946996	303.60403	0	6.8424683						213	8	3	NaN	NaN	NaN	0.0092442	1	10173	10173		93.929	57.342	1	24343			2761	5456	1622	1651	2156	2156					-0.08043709823982681
DYAIWNTKF	9	Unmodified	_DYAIWNTKF_					0	0	0		FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant	FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2849313833501	2	579.284931	1156.55531	1.5824	0.00091667	3.0589	0.001772	4.6413	0.0026886	579.7884046746418	26.964	0.24131	26.964	26.867	27.109	0	1224	94	0.883646	0.057002902	0.883646	358.15143	0	23.103912						431	11	3	NaN	NaN	NaN	0.019939	1	15035	15035		72.076	35.841	1	60586			2762	5229	1623	1652	2157	2157					-0.01670560902334728
DYAKVLLLI	9	Unmodified	_DYAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.3260679165502	2	524.326068	1046.63758	1.0997	0.00057662	-1.7874	-0.00093716	-0.68763	-0.00036054	524.3250218027293	32.635	0.14482	32.635	32.611	32.756	0	1224	52	0.883646	0.03127992	0.883646	358.5943	0	12.693787						166	7	3	NaN	NaN	NaN	0.27507	1	10505	10505		20.513	7.0503	1	24858			2763	2532	1624	1653	2158	2158					0.11612961176638237
DYARWFYFSAF	11	Unmodified	_DYARWFYFSAF_					0	0	0			REV__ENSG00000173250|ENST00000311104|GPR151	REV__ENSG00000173250|ENST00000311104|GPR151	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.8353197219001	2	736.83532	1471.65609	1.1486	0.00084632	-2.3676	-0.0017445	-1.219	-0.0008982	736.8331792741589	24.261	0.072357	24.261	24.237	24.309	0	1020	73	1.0083145	0.04381126	1.0083145	407.64813	0	17.71231						140	4	2	NaN	NaN	NaN	0.76488	1	20477	20477		2.8895	1.3841	1	11781	+		2764	10672	1625	1654	2159	2159					-0.0608752891948825
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.76128911155	2	535.761289	1069.50803	1.4379	0.00077039	-1.165	-0.00062418	0.27291	0.00014622	535.7608980716525	31.911	0.26547	31.911	31.887	32.152	0	1263	43	0.85970795	0.025797546	0.85970795	348.78305	0	10.466034						268	12	4	NaN	NaN	NaN	0.21199	1	11534	11534		24.562	9.3866	1	42919			2765	1973	1626	1655	2160	2160					-0.023948401733377978
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5153017564999	1	1070.5153	1069.50803	1.4293	0.0015301	-0.7046	-0.00075429	0.72472	0.00077582	1070.5146869000398	31.911	0.19308	31.911	31.887	32.08	0	138	79	1.5369828	0.046034336	1.5369828	311.78027	0	9.338165						397	9	4	NaN	NaN	NaN	0.0014219	1	11535	11535		112.76	70.443	1	58239			2766	1973	1626	1655	2161	2161					-0.023948401733377978
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.76128911155	2	535.761289	1069.50803	0.39807	0.00021327	-0.40114	-0.00021491	-0.0030684	-1.6439E-06	535.7611883860191	31.91	0.19303	31.906	31.858	32.051	-0.0037613	1260	43	0.8615505	0.025794804	0.8600311	349.53058	0	10.464935						245	9	3	NaN	NaN	NaN	0.060816	1	11252	11252		42.318	21.869	1	47896			2767	1973	1626	1655	2162	2162					-0.023948401733377978
DYATIFNNL	9	Unmodified						0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1070.5153	1069.50803	0.60468	0.00064732	0.22738	0.00024341	0.83205	0.00089073	1070.51572998395	31.91	0.2172	31.906	31.882	32.099	-0.0037613	135	88	1.5387528	0.05133784	1.5372335	312.13934		10.414001	-0.0024153	0.00045434	0.00012532	NaN	112.76	431	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56545			2768	1973	1626	1655							-0.023948401733377978
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2854626996	2	607.285463	1212.55637	1.0796	0.00065563	-1.1751	-0.00071364	-0.095524	-5.801E-05	607.2849882962764	21.127	0.14458	21.127	21.103	21.248	0	1146	67	0.93142134	0.04038602	0.93142134	377.30978	0	16.359985						210	7	3	NaN	NaN	NaN	0.014111	1	16781	16781		80.442	42.311	1	33070			2769	4577	1627	1656	2163	2163					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.2854626996	2	607.285463	1212.55637	0.75692	0.00045967	-0.17937	-0.00010893	0.57755	0.00035074	607.2856089208602	21.152	0.26476	21.138	21.065	21.33	-0.014004	1149	79	0.92958635	0.047744393	0.9280669	376.56644	0	19.34079						234	12	3	NaN	NaN	NaN	0.010878	1	16114	16114		90.252	65.69	1	35409			2770	4577	1627	1656	2164	2164					-0.041403465334497014
DYCQRPKWEKP	11	Unmodified	_DYCQRPKWEKP_					0	0	0			REV__ENST00000489243.5_1_9:6758133-6893415:+|nuORF	REV__ENST00000489243.5_1_9:6758133-6893415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3508109981	2	725.350811	1448.68707	1.7404	0.0012624	-1.0381	-0.00075298	0.70236	0.00050946	725.350025340902	29.328	0.072384	29.32	29.296	29.368	-0.0077209	1026	37	1.0046607	0.021924555	1.0031413	406.23096	0	8.865112						51	4	2	NaN	NaN	NaN	0.75907	1	19403	19403		3.5794	0.97998	1	3457.7	+		2771	9003	1628	1657	2165	2165					-0.019326988769080344
DYCTWQPAQS	10	Unmodified	_DYCTWQPAQS_					0	0	0			REV__PTPRB|p.R92Q|1|0.42|ENSG00000127329|chr12:70635847-70635847|C/T|missense_variant	REV__PTPRB|p.R92Q|1|0.42|ENSG00000127329|chr12:70635847-70635847|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.1659675447666	3	400.165968	1197.47607	1.1371	0.00045503	-7.8268	-0.003132	-6.6897	-0.002677	400.4969400166921	30.534	0.072372	30.529	30.505	30.577	-0.0057545	1494	37	0.7172283	0.022297442	0.71570885	435.87097	0	13.550507						83	4	3	NaN	NaN	NaN	0.73444	1	15725	15725		2.7042	1.8196	1	7091.5	+		2772	13303	1629	1658	2166	2166					-0.11476575918800336
DYDPLVVKL	9	Unmodified	_DYDPLVVKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.29750744235	2	531.297507	1060.58046	1.643	0.00087293	-2.239	-0.0011896	-0.59602	-0.00031667	531.2959945823168	27.471	0.16899	27.471	27.374	27.543	0	1260	67	0.8615505	0.040521502	0.8615505	349.568	0	16.441284						232	8	4	NaN	NaN	NaN	0.028569	1	11137	11137		60.984	40.535	1	47051			2773	2715	1630	1659	2167	2167					0.05259493900234702
DYDPLVVKL	9	Unmodified						0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.297507	1060.58046	0.65988	0.00035059	-0.69665	-0.00037013	-0.036768	-1.9535E-05	531.2969542958627	27.494	0.1448	27.484	27.436	27.581	-0.009552	1260	55	0.8615505	0.033157587	0.8600311	349.568		13.45343	0.006894	0.00077953	-0.00075972	NaN	60.984	224	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45736			2774	2715	1630	1659							0.05259493900234702
DYDTCLFVGF	10	Unmodified	_DYDTCLFVGF_					0	0	0			REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.25498231315	2	590.254982	1178.49541	1.4024	0.0008278	0.85468	0.00050448	2.2571	0.0013323	590.757409324448	23.103	0.31343	23.09	23.017	23.331	-0.013294	1194	49	0.902037	0.029409707	0.9005176	365.5253	0	11.91748						318	14	5	NaN	NaN	NaN	0.40641	1	15190	15190		23.334	0.24862	1	54737	+		2775	11638	1631	1660	2168	2168					-0.08669619627903558
DYDTCLFVGF	10	Unmodified						0	0	0			REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.254982	1178.49541	2.0633	0.0012178	1.6676	0.00098434	3.7309	0.0022022	590.758261428932	23.079	0.24083	23.079	22.959	23.2	0	1194	55	0.902037	0.03308952	0.902037	365.52527		13.4086	-0.0051092	0.00061044	0.00075972	NaN	23.334	282	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63166	+		2776	11638	1631	1660							-0.08669619627903558
DYDTCLFVGF	10	Unmodified						0	0	0			REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	REV__ENST00000297689.3_1_9:94171464-94171518:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.254982	1178.49541	1.4024	0.0008278	0.85468	0.00050448	2.2571	0.0013323	590.757409324448	23.103	0.31343	23.09	23.017	23.331	-0.013294	1194	49	0.902037	0.029409707	0.9005176	365.5253		11.91748	0.0051092	-0.00034927	-0.00075972	NaN	23.334	318	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54737	+		2777	11638	1631	1660							-0.08669619627903558
DYEYDFVFGS	10	Unmodified	_DYEYDFVFGS_					0	0	0			REV__ENSG00000133275|ENST00000255641|CSNK1G2	REV__ENSG00000133275|ENST00000255641|CSNK1G2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.2534938692	2	621.253494	1240.49243	1.0548	0.00065533	-6.836	-0.0042469	-5.7811	-0.0035915	621.2486543994952	26.94	0.14473	26.94	26.891	27.036	0	1140	37	0.93509084	0.022012115	0.93509084	378.70026	0	8.914642						155	7	3	NaN	NaN	NaN	0.75966	1	17532	17532		3.9685	0.39873	1	20097	+		2778	9564	1632	1661	2169	2169					-0.11819171481033663
DYEYDFVFGS	10	Unmodified						0	0	0			REV__ENSG00000133275|ENST00000255641|CSNK1G2	REV__ENSG00000133275|ENST00000255641|CSNK1G2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	621.253494	1240.49243	1.0548	0.00065533	-6.836	-0.0042469	-5.7811	-0.0035915	621.2486543994952	26.94	0.14473	26.94	26.891	27.036	0	1140	37	0.93509084	0.022012115	0.93509084	378.70026		8.914642	0.0057302	0.00030684	0.00075972	NaN	3.9685	155	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20097	+		2779	9564	1632	1661							-0.11819171481033663
DYEYDFVFGS	10	Unmodified						0	0	0			REV__ENSG00000133275|ENST00000255641|CSNK1G2	REV__ENSG00000133275|ENST00000255641|CSNK1G2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	621.253494	1240.49243	0.64791	0.00040252	-7.3095	-0.0045411	-6.6616	-0.0041386	621.2493522649473	26.939	0.16893	26.928	26.88	27.049	-0.010645	1140	37	0.93509084	0.022012115	0.9335714	378.70026		8.914642	-0.0057302	-0.0002816	-0.00075972	NaN	3.9685	122	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16968	+		2780	9564	1632	1661							-0.11819171481033663
DYFFKPVLF	9	Unmodified	_DYFFKPVLF_					0	0	0		ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.31041785235	2	588.310418	1174.60628	1.4343	0.00084379	-1.8999	-0.0011177	-0.4656	-0.00027392	588.3093849003359	33.045	0.21721	33.045	32.949	33.166	0	1179	91	0.9112251	0.055143297	0.9112251	369.26263	0	22.34613						619	10	5	NaN	NaN	NaN	0.08308	1	15640	15640		50.315	32.516	1	215790			2781	6642	1633	1662	2170	2170					0.025963881425013824
DYFFKPVLF	9	Unmodified	_DYFFKPVLF_					0	0	0		ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.31041785235	2	588.310418	1174.60628	1.1615	0.0006833	-1.7257	-0.0010153	-0.56426	-0.00033196	588.3093577042011	33.044	0.26526	33.042	33.018	33.283	-0.0024757	1176	88	0.9130621	0.053302348	0.91154265	370.00708	0	21.600098						564	12	3	NaN	NaN	NaN	0.044153	1	15077	15077		63.731	40.396	1	211760			2782	6642	1633	1662	2171	2171					0.025963881425013824
DYGGFTMMF	9	Unmodified	_DYGGFTMMF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.4165156893	1	1068.41652	1067.40924	1.4477	0.0015467	-1.2444	-0.0013295	0.20331	0.00021722	1068.4163926383687	34.855	0.096432	34.855	34.831	34.927	0	144	40	1.533442	0.023015976	1.533442	311.06982	0	4.6689453						91	5	3	NaN	NaN	NaN	0.66529	1	11427	11427		2.1763	0	1	5634.4			2783	4377	1634	1663	2172	2172					-0.12176902734245232
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4985890598	1	1012.49859	1011.49131	1.7999	0.0018224	-0.17046	-0.00017259	1.6294	0.0016498	1012.4982337463344	35.892	0.24104	35.892	35.844	36.085	0	207	100	1.496219	0.05857408	1.496219	303.73294	0	11.890533						536	11	4	NaN	NaN	NaN	0.014046	1	9032	9032		80.639	22.039	1	144630			2784	3264	1635	1664	2173	2173					-0.013973410592939217
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4985890598	1	1012.49859	1011.49131	1.6218	0.0016421	-0.53248	-0.00053914	1.0893	0.0011029	1012.4980798039026	35.89	0.24107	35.891	35.843	36.084	0.0011024	204	94	1.4979934	0.055006623	1.496474	304.09314	0	11.166382						609	11	5	NaN	NaN	NaN	0.01047	1	8858	8858		91.429	26.879	1	149070			2785	3264	1635	1664	2174	2174					-0.013973410592939217
DYGNGFGGF	9	Unmodified	_DYGNGFGGF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.3737228972002	1	933.373723	932.366446	1.8992	0.0017727	-0.52511	-0.00049013	1.3741	0.0012826	933.3729110760447	26.577	0.26598	26.577	26.529	26.795	0	363	91	1.4036897	0.053552747	1.4036897	285.27444	0	10.883636						414	12	3	NaN	NaN	NaN	0.0012818	1	6646	6646		113.18	76.597	1	68152			2786	5088	1636	1665	2175	2175					-0.10244213475789365
DYGNGFGGF	9	Unmodified	_DYGNGFGGF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.3737228972002	1	933.373723	932.366446	1.391	0.0012983	0.40111	0.00037439	1.7921	0.0016727	933.3741108178007	26.577	0.28956	26.566	26.542	26.832	-0.010645	363	88	1.4036897	0.05177045	1.4021703	285.27444	0	10.521393						460	13	3	NaN	NaN	NaN	0.011206	1	6505	6505		89.256	33.762	1	73313			2787	5088	1636	1665	2176	2176					-0.10244213475789365
DYHTKLFLI	9	Unmodified	_DYHTKLFLI_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3187742007001	2	575.318774	1148.623	1.7198	0.00098945	-5.3721	-0.0030907	-3.6523	-0.0021012	575.3168485010758	26.167	0.072399	26.156	26.131	26.204	-0.011135	1152	79	0.92775106	0.047754705	0.9262317	376.05832	0	19.357117						149	4	3	NaN	NaN	NaN	0.10945	1	14267	14267		34.454	17.596	1	14673			2788	4988	1637	1666	2177	2177					0.054628890284675435
DYIDGILIKTF	11	Unmodified	_DYIDGILIKTF_					0	0	0		ENST00000475596.1_1_2:190306218-190316629:+|nuORF;ENST00000472286.5_1_2:190306218-190320233:+|nuORF;ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000475596.1_1_2:190306218-190316629:+|nuORF	ENST00000475596.1_1_2:190306218-190316629:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3555536375001	2	649.355554	1296.69655	1.0484	0.00068082	-4.2551	-0.0027631	-3.2067	-0.0020823	649.3517500967365	31.839	0.072388	31.839	31.815	31.887	0	1095	43	0.9625867	0.025642037	0.9625867	389.6497	0	10.379761						104	4	3	NaN	NaN	NaN	0.52491	1	18722	18722		17.582	12.393	1	11127			2789	2019	1638	1667	2178	2178					0.060073926802715505
DYIDGILIKTF	11	Unmodified	_DYIDGILIKTF_					0	0	0		ENST00000475596.1_1_2:190306218-190316629:+|nuORF;ENST00000472286.5_1_2:190306218-190320233:+|nuORF;ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000475596.1_1_2:190306218-190316629:+|nuORF	ENST00000475596.1_1_2:190306218-190316629:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3555536375001	2	649.355554	1296.69655	0.60719	0.00039428	-4.0327	-0.0026186	-3.4255	-0.0022244	649.3529608204677	31.838	0.12064	31.833	31.785	31.906	-0.0044155	1092	52	0.9644182	0.03113848	0.96289873	390.39108	0	12.604675						146	6	3	NaN	NaN	NaN	0.10311	1	17887	17887		39.34	28.98	1	12247			2790	2019	1638	1667	2179	2179					0.060073926802715505
DYIDSSWEL	9	Unmodified	_DYIDSSWEL_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.4891465855	1	1127.48915	1126.48187	1.5021	0.0016936	4.8568	0.005476	6.3589	0.0071696	1127.4942876130697	30.922	0.14479	30.922	30.897	31.042	0	69	46	1.5776473	0.026489496	1.5776473	319.82288	0	5.369995						107	7	2	NaN	NaN	NaN	0.47587	1	13942	13942		10.605	3.0646	1	8047.9			2791	3695	1639	1668	2180	2180					-0.07631154135447105
DYIDTIWKI	9	Unmodified	_DYIDTIWKI_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8082393041501	2	583.808239	1165.60193	1.4204	0.00082926	-1.5917	-0.00092928	-0.17132	-0.00010002	583.8073921677719	31.115	0.2896	31.115	31.042	31.332	0	1194	100	0.902037	0.060634673	0.902037	365.57208	0	24.57367						510	13	4	NaN	NaN	NaN	0.026469	1	15325	15325		63.731	35.942	1	142300			2792	3901	1640	1669	2181	2181					0.025748789289536944
DYIDTIWKI	9	Unmodified	_DYIDTIWKI_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8082393041501	2	583.808239	1165.60193	1.4462	0.00084433	-1.6563	-0.00096697	-0.21007	-0.00012264	583.8076012643626	31.114	0.31375	31.109	31.036	31.35	-0.0050716	1191	82	0.90387505	0.049604833	0.9023556	366.317	0	20.103546						453	14	4	NaN	NaN	NaN	0.011693	1	14796	14796		87.778	60.482	1	141620			2793	3901	1640	1669	2182	2182					0.025748789289536944
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.55712465650004	3	385.557125	1153.64954	1.9326	0.00074512	-3.5267	-0.0013597	-1.5941	-0.00061461	385.5552120541283	26.239	0.072372	26.239	26.215	26.288	0	1443	34	0.7487872	0.020400584	0.7487872	455.24634	0	12.403076						60	4	2	NaN	NaN	NaN	0.17328	1	14936	14936		27.046	10.188	1	5017.6			2794	2083	1641	1670	2183	2183					0.07886577919794036
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8320487514501	2	577.832049	1153.64954	2.1659	0.0012515	-2.5975	-0.0015009	-0.43157	-0.00024937	577.8306115944818	26.239	0.12066	26.239	26.215	26.336	0	1167	58	0.91857195	0.034884453	0.91857195	372.31836	0	14.139496						193	6	3	NaN	NaN	NaN	0.53237	1	14937	14937		5.6942	0	1	28617			2795	2083	1641	1670	2184	2184					0.07886577919794036
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8320487514501	2	577.832049	1153.64954	1.6008	0.00092497	-1.5224	-0.00087971	0.078323	4.5257E-05	577.8314899005064	26.287	0.096491	26.276	26.252	26.349	-0.011137	1164	52	0.9204082	0.031209052	0.91888875	373.06262	0	12.64978						157	5	3	NaN	NaN	NaN	0.25151	1	14449	14449		24.4	3.8448	1	21897			2796	2083	1641	1670	2185	2185					0.07886577919794036
DYIKFLRSI	9	Unmodified						0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	385.557125	1153.64954	2.2494	0.00086726	-1.3237	-0.00051038	0.92561	0.00035688	385.55654046514906	26.311	0.096491	26.3	26.252	26.349	-0.011135	1440	28	0.7506418	0.016689539	0.7491224	456.3739		10.146881	0.030509	0.0012102	0.00016758	NaN	27.046	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3972.9			2797	2083	1641	1670							0.07886577919794036
DYILNVMKF	9	Unmodified	_DYILNVMKF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.79936002705	2	571.79936	1141.58417	1.5371	0.00087891	-1.5602	-0.00089211	-0.023089	-1.3202E-05	571.7986963094163	30.656	0.19309	30.656	30.608	30.801	0	1203	76	0.8965218	0.045984983	0.8965218	363.42627	0	18.641113						372	9	4	NaN	NaN	NaN	0.03618	1	14524	14524		52.78	14.649	1	178040			2798	995	1642	1671	2186	2186					0.01903840402451351
DYILNVMKF	9	Unmodified	_DYILNVMKF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.79936002705	2	571.79936	1141.58417	1.1319	0.00064721	-0.63389	-0.00036246	0.49799	0.00028475	571.7996035457012	30.655	0.3619	30.649	30.505	30.866	-0.0057545	1197	91	0.9001988	0.055149198	0.8986794	364.91684	0	22.356049						548	16	5	NaN	NaN	NaN	0.089764	1	14046	14046		37.302	10.006	1	196920			2799	995	1642	1671	2187	2187					0.01903840402451351
DYILNVMKF	9	Unmodified						0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.79936	1141.58417	2.2214	0.0012702	-5.6004	-0.0032023	-3.3791	-0.0019321	572.2978357431476	30.945	0.024153	30.94	30.94	30.964	-0.0050716	1197	25	0.9001988	0.014706433	0.8986794	364.91687		5.961609	0.14172	-0.0042607	0.0010788	NaN	52.78	25	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1922.9			2800	995	1642	1671							0.01903840402451351
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(78)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7968173381	2	579.796817	1157.57908	2.5624	0.0014857	-0.99502	-0.00057691	1.5674	0.00090876	579.7966468274889	26.022	0.21723	26.022	25.974	26.191	0	1197	100	0.9001988	0.060654342	0.9001988	364.85666	0	24.583618						602	10	5	NaN	NaN	NaN	0.015029	1	15068	15068		78.289	19.892	1	217130			2801	995	1642	1672	2188	2188		107			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(120)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7968173381	2	579.796817	1157.57908	2.4837	0.00144	0.21784	0.0001263	2.7015	0.0015663	579.797043898651	26.022	0.24138	26.011	25.987	26.228	-0.011135	1197	97	0.9001988	0.058838546	0.8986794	364.85666	0	23.847687						473	11	3	NaN	NaN	NaN	0.00015011	1	14570	14570		119.86	67.079	1	218640			2802	995	1642	1672	2189	2189		107			0.006595365398197828
DYKEQLLL	8	Unmodified	_DYKEQLLL_					0	0	0			REV__nc|ENSG00000072571|O75330-4|HMMR	REV__nc|ENSG00000072571|O75330-4|HMMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.28185737815005	2	511.281857	1020.54916	0.89869	0.00045949	-6.0128	-0.0030743	-5.1141	-0.0026148	511.27890416490817	29.545	0.14475	29.538	29.49	29.635	-0.0070648	1299	61	0.8375814	0.03688556	0.83606195	340.01355	0	14.973572						102	7	2	NaN	NaN	NaN	0.78967	1	9204	9204		10.605	1.4818	1	14183	+		2803	8587	1643	1673	2190	2190					0.03970920866152028
DYKEQLLL	8	Unmodified						0	0	0			REV__nc|ENSG00000072571|O75330-4|HMMR	REV__nc|ENSG00000072571|O75330-4|HMMR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.281857	1020.54916	0.89869	0.00045949	-6.0128	-0.0030743	-5.1141	-0.0026148	511.27890416490817	29.545	0.14475	29.538	29.49	29.635	-0.0070648	1299	61	0.8375814	0.03688556	0.83606195	340.01355		14.973572	-0.003949	0.00021029	-0.00075972	NaN	10.605	102	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14183	+		2804	8587	1643	1673							0.03970920866152028
DYKESFNTI	9	Unmodified	_DYKESFNTI_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000083307|Q6ISB3-2|GRHL2;nc|ENSG00000134317|Q9NZI5-3|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7640287657501	2	558.764029	1115.5135	0.93585	0.00052292	-1.5669	-0.00087553	-0.63106	-0.00035261	558.762956496268	20.935	0.19263	20.921	20.873	21.065	-0.014088	1215	79	0.8891654	0.047858	0.88764596	360.5447	0	19.405792						246	9	3	NaN	NaN	NaN	0.29341	1	13099	13099		19.336	5.2948	1	27984			2805	71;2864	1644	1674	2191	2191					-0.03963161381511782
DYKFSWDRVF	10	Unmodified	_DYKFSWDRVF_					0	0	0		ENST00000497828.1_1_6:88228346-88228628:-|nuORF;ENSG00000146282|ENST00000369536|RARS2	ENST00000497828.1_1_6:88228346-88228628:-|nuORF	ENST00000497828.1_1_6:88228346-88228628:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8274946898	2	681.827495	1361.64044	1.3088	0.00089235	-6.5163	-0.004443	-5.2076	-0.0035507	681.8226131830496	24.381	0.096527	24.381	24.309	24.406	0	1056	37	0.9863805	0.0219481	0.9863805	399.0805	0	8.880005						68	5	2	NaN	NaN	NaN	0.69717	1	19698	19698		8.2448	1.2605	1	5796.3			2806	3559	1645	1675	2192	2192					-0.02591815436539946
DYKIYCEK	8	Unmodified	_DYKIYCEK_					0	0	0		nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;ENSG00000121446|ENST00000294854|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4972088513	1	1061.49721	1060.48993	1.3202	0.0014014	1.3521	0.0014352	2.6723	0.0028367	1061.498868614524	35.722	0.096428	35.722	35.674	35.77	0.00052643	192	55	1.5050892	0.031913996	1.5035697	305.34366	0	6.474518						90	5	2	NaN	NaN	NaN	0.83211	1	10865	10865		4.9097	0.49665	1	5406.8			2807	2295	1646	1676	2193	2193					-0.03789298419678744
DYKNTFPKW	9	Unmodified	_DYKNTFPKW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.7982059341001	2	599.798206	1197.58186	1.2329	0.00073952	-2.9155	-0.0017487	-1.6825	-0.0010092	599.7970544362486	21.031	0.24074	21.031	20.959	21.2	0	1218	73	0.8873258	0.044128895	0.8873258	359.49768	0	17.878723						405	11	4	NaN	NaN	NaN	0.025144	1	16388	16388		80.241	62.271	1	68322			2808	4721	1647	1677	2194	2194					-0.00902872010988176
DYKNTFPKW	9	Unmodified	_DYKNTFPKW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.20122944493335	3	400.201229	1197.58186	1.0031	0.00040144	-1.6145	-0.00064612	-0.61139	-0.00024468	400.2003047982825	21.031	0.12028	21.031	20.983	21.103	0	1437	64	0.7524962	0.038954973	0.7524962	457.30334	0	23.673523						201	6	4	NaN	NaN	NaN	0.29341	1	16390	16390		19.336	13.196	1	23928			2809	4721	1647	1677	2195	2195					-0.00902872010988176
DYKNTFPKW	9	Unmodified	_DYKNTFPKW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7982059341001	2	599.798206	1197.58186	0.81346	0.00048791	-0.99673	-0.00059783	-0.18327	-0.00010992	599.7978279806777	21.055	0.28889	21.041	20.921	21.21	-0.014086	1218	70	0.8873258	0.042292476	0.8858064	359.49768	0	17.134674						514	13	4	NaN	NaN	NaN	0.012379	1	15745	15745		86.17	65.721	1	73699			2810	4721	1647	1677	2196	2196					-0.00902872010988176
DYKNTFPKW	9	Unmodified	_DYKNTFPKW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.20122944493335	3	400.201229	1197.58186	0.96643	0.00038677	-0.27959	-0.00011189	0.68684	0.00027487	400.2013960863897	21.055	0.16855	21.041	21.017	21.186	-0.014086	1437	64	0.7524962	0.038954973	0.75097674	457.30334	0	23.673523						174	8	3	NaN	NaN	NaN	0.10529	1	15746	15746		35.056	24.195	1	20994			2811	4721	1647	1677	2197	2197					-0.00902872010988176
DYKRLFFRF	9	Unmodified	_DYKRLFFRF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.2363854864333	3	431.236385	1290.68733	1.2621	0.00054425	-2.8889	-0.0012458	-1.6269	-0.00070156	431.23536554558615	23.995	0.26537	23.995	23.899	24.164	0	1404	34	0.77288127	0.020371795	0.77288127	469.30615	0	12.370087						229	12	4	NaN	NaN	NaN	0.21451	1	18605	18605		24.4	19.857	1	40082			2812	4588	1648	1678	2198	2198					0.05361088905260658
DYKRLFFRF	9	Unmodified	_DYKRLFFRF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.2363854864333	3	431.236385	1290.68733	1.174	0.00050629	-3.1666	-0.0013656	-1.9926	-0.00085927	431.2349183482043	24.285	0.09655	24.272	24.224	24.32	-0.012749	1404	31	0.77288127	0.018518806	0.7713618	469.30615	0	11.244904						81	5	2	NaN	NaN	NaN	0.13999	1	17774	17774		30.035	23.418	1	8844.8			2813	4588	1648	1678	2199	2199					0.05361088905260658
DYKRLFFRF	9	Unmodified	_DYKRLFFRF_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.2363854864333	3	431.236385	1290.68733	1.0339	0.00044586	-1.4862	-0.0006409	-0.45228	-0.00019504	431.23575318261436	24.454	0.096519	24.441	24.344	24.441	-0.012749	1401	34	0.77473325	0.02036959	0.7732138	470.4307	0	12.368774						115	5	3	NaN	NaN	NaN	0.21451	1	17776	17776		24.4	20.151	1	12899			2814	4588	1648	1678	2200	2200					0.05361088905260658
DYLAASAK	8	Unmodified	_DYLAASAK_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	838.4305094946001	1	838.430509	837.423233	1.4029	0.0011762	4.1381	0.0034695	5.541	0.0046457	838.4347831755797	32.659	0.096554	32.659	32.611	32.707	0	384	103	1.3911947	0.060757875	1.3911947	283.2011	0	12.368286						175	5	2	NaN	NaN	NaN	0.79607	1	5230	5230		9.746	1.4557	1	16322	+		2815	10106	1649	1679	2201	2201					-0.0019816591927792615
DYLAASAK	8	Unmodified	_DYLAASAK_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	838.4305094946001	1	838.430509	837.423233	0.77242	0.00064762	4.9853	0.0041798	5.7577	0.0048274	838.4350212150006	32.658	0.12068	32.655	32.607	32.727	-0.0031052	384	121	1.3911947	0.071502686	1.3896753	283.2011	0	14.5555725						165	6	2	NaN	NaN	NaN	0.76406	1	5106	5106		14.042	6.5012	1	14911	+		2816	10106	1649	1679	2202	2202					-0.0019816591927792615
DYLAASAK	8	Unmodified						0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	838.430509	837.423233	1.4029	0.0011762	4.1381	0.0034695	5.541	0.0046457	838.4347831755797	32.659	0.096554	32.659	32.611	32.707	0	384	103	1.3911947	0.060757875	1.3911947	283.2011		12.368286	0.0020926	-0.0003058	0.00075972	NaN	14.042	175	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16322	+		2817	10106	1649	1679							-0.0019816591927792615
DYLAASAK	8	Unmodified						0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	838.430509	837.423233	0.77242	0.00064762	4.9853	0.0041798	5.7577	0.0048274	838.4350212150006	32.658	0.12068	32.655	32.607	32.727	-0.0031052	384	121	1.3911947	0.071502686	1.3896753	283.2011		14.5555725	-0.0020926	0.00040451	-0.00075972	NaN	14.042	165	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14911	+		2818	10106	1649	1679							-0.0019816591927792615
DYLCDLIYF	9	Unmodified	_DYLCDLIYF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7677255476501	2	582.767726	1163.5209	1.0361	0.00060382	5.0342	0.0029337	6.0703	0.0035376	582.7713557895406	31.259	0.16891	31.259	31.211	31.38	0	1197	55	0.9001988	0.033093095	0.9001988	364.8347	0	13.412048						175	8	3	NaN	NaN	NaN	0.61413	1	15263	15263		4.9097	0	1	22202			2819	766	1650	1680	2203	2203					-0.05432145105442032
DYLDSIYFNRF	11	Unmodified	_DYLDSIYFNRF_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.84334171925	2	726.843342	1451.67213	1.6778	0.0012195	1.937	0.0014079	3.6148	0.0026274	726.8458089215569	30.149	0.1448	30.149	30.125	30.27	0	1017	67	1.010141	0.040186226	1.010141	408.4389	0	16.24884						305	7	4	NaN	NaN	NaN	0.11462	1	20389	20389		38.269	27.909	1	52058			2820	5752	1651	1681	2204	2204					-0.03563867473258142
DYLDSIYFNRF	11	Unmodified	_DYLDSIYFNRF_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.84334171925	2	726.843342	1451.67213	1.0431	0.00075816	1.0641	0.00077344	2.1072	0.0015316	726.84431684121	30.148	0.21716	30.142	30.094	30.311	-0.0064106	1014	64	1.0119673	0.038357556	1.0104479	409.17737	0	15.50946						350	10	4	NaN	NaN	NaN	0.0043425	1	19414	19414		74.794	54.281	1	51297			2821	5752	1651	1681	2205	2205					-0.03563867473258142
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.5447732537333	3	423.544773	1267.61249	1.6348	0.00069241	-4.2716	-0.0018092	-2.6368	-0.0011168	423.54282141734984	22.621	0.16889	22.621	22.573	22.742	0	1437	43	0.7524962	0.025962949	0.7524962	457.01593	0	15.768158						226	8	4	NaN	NaN	NaN	0.20577	1	18183	18183		27.296	16.435	1	32751			2822	4505	1652	1682	2206	2206					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.8135216473	2	634.813522	1267.61249	2.0758	0.0013178	-3.0165	-0.0019149	-0.94068	-0.00059716	634.8117026424505	22.621	0.16889	22.621	22.573	22.742	0	1119	70	0.9479278	0.04217851	0.9479278	383.80862	0	17.077759						416	8	5	NaN	NaN	NaN	0.00068417	1	18184	18184		114.98	50.989	1	131740			2823	4505	1652	1682	2207	2207					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.5447732537333	3	423.544773	1267.61249	1.0104	0.00042793	-2.9933	-0.0012678	-1.9829	-0.00083985	423.5436771786978	22.645	0.19294	22.631	22.583	22.776	-0.01354	1437	43	0.7524962	0.025960147	0.75097674	457.01593	0	15.766418						221	9	4	NaN	NaN	NaN	0.33629	1	17371	17371		10.965	5.2679	1	30739			2824	4505	1652	1682	2208	2208					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.8135216473	2	634.813522	1267.61249	1.717	0.00109	-2.6258	-0.0016669	-0.90884	-0.00057694	634.8111749511062	22.645	0.26515	22.631	22.583	22.848	-0.01354	1119	67	0.9479278	0.04034251	0.94640833	383.80862	0	16.334381						483	12	5	NaN	NaN	NaN	0.0068607	1	17372	17372		98.792	46.012	1	136230			2825	4505	1652	1682	2209	2209					-0.010611384166168136
DYLEWPEYF	9	Unmodified	_DYLEWPEYF_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2742293113	2	631.274229	1260.53391	1.5528	0.00098026	-2.8171	-0.0017784	-1.2643	-0.00079809	631.2723865562064	35.603	0.33765	35.603	35.482	35.82	0	1146	82	0.93142134	0.049562037	0.93142134	377.14813	0	20.068481						1146	15	6	NaN	NaN	NaN	0.012018	1	18002	18002		99.986	76.633	1	550150			2826	2595	1653	1683	2210	2210					-0.08593990721715272
DYLEWPEYF	9	Unmodified	_DYLEWPEYF_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2742293113	2	631.274229	1260.53391	1.3044	0.00082346	-1.7974	-0.0011347	-0.49299	-0.00031121	631.273135645248	35.601	0.38578	35.602	35.505	35.891	0.00053024	1143	91	0.9332562	0.05505997	0.93173677	377.89108	0	22.294739						1228	17	5	NaN	NaN	NaN	0.010878	1	17226	17226		116.74	83.169	1	541160			2827	2595	1653	1683	2211	2211					-0.08593990721715272
DYLEWPEYF	9	Unmodified	_DYLEWPEYF_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2742293113	2	631.274229	1260.53391	0.91068	0.00057489	-0.97545	-0.00061578	-0.064776	-4.0891E-05	631.2734442321133	37.191	0.14446	37.193	37.121	37.265	0.0022469	1146	61	0.93142134	0.036718488	0.9299019	377.14813	0	14.867981						171	7	2	NaN	NaN	NaN	0.23499	1	17227	17227		32.453	26.203	1	15251			2828	2595	1653	1683	2212	2212					-0.08593990721715272
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.3338929486501	2	555.333893	1108.65323	0.69422	0.00038552	-0.95955	-0.00053287	-0.26534	-0.00014735	555.3334208908707	33.962	0.19313	33.962	33.914	34.107	0	1194	49	0.902037	0.029409707	0.902037	365.7916	0	11.926178						252	9	4	NaN	NaN	NaN	0.026469	1	13240	13240		63.731	40.396	1	54848			2829	1454	1654	1684	2213	2213					0.10325247693663187
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.3338929486501	2	555.333893	1108.65323	0.92048	0.00051117	-1.0097	-0.00056071	-0.089203	-4.9537E-05	555.3331317218176	33.961	0.21724	33.96	33.911	34.129	-0.0012474	1191	49	0.90387505	0.029403389	0.9023556	366.53693	0	11.923584						264	10	4	NaN	NaN	NaN	0.032689	1	12867	12867		55.592	29.477	1	54655			2830	1454	1654	1684	2214	2214					0.10325247693663187
DYLGFLPTF	9	Unmodified	_DYLGFLPTF_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5349745661	1	1072.53497	1071.5277	0.896	0.00096099	-1.6792	-0.001801	-0.78324	-0.00084005	1072.5322692048728	38.131	0.048046	38.131	38.107	38.155	0	108	46	1.5546752	0.026528835	1.5546752	315.36166	0	5.3812866						75	3	2	NaN	NaN	NaN	0.27608	1	11627	11627		20.449	5.2733	1	6144.7			2831	2951	1655	1685	2215	2215					-0.0052046416258235695
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8373310946001	2	640.837331	1279.66011	1.8505	0.0011859	-1.8419	-0.0011803	0.0086103	5.5178E-06	640.8359219606253	24.767	0.19304	24.767	24.719	24.912	0	1074	52	0.9754029	0.031118333	0.9754029	394.893	0	12.598297						332	9	5	NaN	NaN	NaN	0.030261	1	18420	18420		66.656	29.354	1	84152			2832	3100	1656	1686	2216	2216					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5606462186	3	427.560646	1279.66011	1.1989	0.00051259	-2.0764	-0.00088778	-0.87753	-0.0003752	427.55934902508506	24.815	0.12062	24.803	24.755	24.875	-0.012394	1419	31	0.76361835	0.018530905	0.7620989	463.7238	0	11.253265						90	6	3	NaN	NaN	NaN	0.23499	1	17600	17600		23.086	12.842	1	6889.1			2833	3100	1656	1686	2217	2217					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.8373310946001	2	640.837331	1279.66011	1.9439	0.0012457	-2.6669	-0.001709	-0.72296	-0.0004633	640.8353847215868	24.815	0.28952	24.803	24.755	25.044	-0.012394	1077	76	0.9735726	0.04578203	0.9720532	394.15204	0	18.534882						435	13	4	NaN	NaN	NaN	0.17462	1	17601	17601		36.235	17.071	1	83570			2834	3100	1656	1686	2218	2218					0.03146560574236901
DYLNEWGNRF	10	Unmodified	_DYLNEWGNRF_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.2991013911001	2	657.299101	1312.58365	1.8146	0.0011927	-3.9696	-0.0026092	-2.155	-0.0014165	657.2961766397018	25.708	0.1689	25.708	25.66	25.829	0	1125	67	0.9442611	0.04034251	0.9442611	382.18283	0	16.328339						292	8	4	NaN	NaN	NaN	0.025119	1	18988	18988		61.575	37.181	1	32815			2835	522	1657	1687	2219	2219					-0.06013862993040675
DYLNEWGNRF	10	Unmodified	_DYLNEWGNRF_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.2991013911001	2	657.299101	1312.58365	1.853	0.001218	-3.0744	-0.0020208	-1.2214	-0.00080281	657.7986800476272	25.708	0.12064	25.696	25.672	25.793	-0.0116	1125	58	0.9442611	0.034835637	0.94274163	382.1828	0	14.099457						243	6	5	NaN	NaN	NaN	0.0049332	1	18149	18149		77.761	44.983	1	26293			2836	522	1657	1687	2220	2220					-0.06013862993040675
DYLNEWGSRF	10	Unmodified	_DYLNEWGSRF_					0	0	0		ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;ENST00000429102.6_2_16:68732081-68732300:+|nuORF;ENST00000567674.1_1_16:68721613-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.79365187245	2	643.793652	1285.57275	2.3357	0.0015037	2.2097	0.0014226	4.5455	0.0029264	644.2993055766696	26.312	0.21723	26.312	26.263	26.481	0	1131	76	0.94059354	0.045831382	0.94059354	380.7817	0	18.553986						317	10	4	NaN	NaN	NaN	0.28676	1	18524	18524		28.296	1.2492	1	48352			2837	651	1658	1688	2221	2221					-0.05861265367343549
DYLNEWGSRF	10	Unmodified	_DYLNEWGSRF_					0	0	0		ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;ENST00000429102.6_2_16:68732081-68732300:+|nuORF;ENST00000567674.1_1_16:68721613-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.79365187245	2	643.793652	1285.57275	2.2419	0.0014433	-1.9616	-0.0012628	0.28038	0.00018051	643.7918738460771	26.311	0.14472	26.3	26.228	26.373	-0.011135	1134	67	0.9387595	0.040355563	0.93724006	380.03925	0	16.337189						186	7	3	NaN	NaN	NaN	0.025119	1	17696	17696		61.575	27.121	1	35753			2838	651	1658	1688	2222	2222					-0.05861265367343549
DYLRDPVTI	9	Unmodified	_DYLRDPVTI_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2902137265	2	546.290214	1090.56587	1.2853	0.00070215	-1.9178	-0.0010477	-0.63255	-0.00034555	546.2891817771198	24.671	0.12059	24.671	24.623	24.743	0	1227	70	0.88180584	0.042319894	0.88180584	357.6603	0	17.164948						206	6	3	NaN	NaN	NaN	0.10945	1	12431	12431		34.454	5.5584	1	36841			2839	6042	1659	1689	2223	2223					0.02421421752092101
DYLRDPVTI	9	Unmodified	_DYLRDPVTI_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2902137265	2	546.290214	1090.56587	1.2246	0.00066896	-0.96928	-0.00052951	0.25528	0.00013945	546.2893850314064	24.695	0.12056	24.682	24.634	24.755	-0.012392	1227	64	0.88180584	0.038639963	0.8802864	357.6603	0	15.672333						254	6	5	NaN	NaN	NaN	0.026443	1	12118	12118		63.765	33.729	1	35812			2840	6042	1659	1689	2224	2224					0.02421421752092101
DYLWQRNLRQF	11	Unmodified	_DYLWQRNLRQF_					0	0	0		nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.6002750043667	3	513.600275	1537.779	1.6333	0.00083887	-3.2226	-0.0016551	-1.5893	-0.00081626	513.5983943311101	24.526	0.096422	24.526	24.502	24.598	0	1407	34	0.77102906	0.02037406	0.77102906	467.38516	0	12.350403						94	5	4	NaN	NaN	NaN	0.57312	1	20677	20677		15.786	13.75	1	7797.9			2841	1395	1660	1690	2225	2225					0.03161727531778524
DYLWQRNLRQF	11	Unmodified	_DYLWQRNLRQF_					0	0	0		nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.6002750043667	3	513.600275	1537.779	1.3525	0.00069464	-1.8744	-0.0009627	-0.52192	-0.00026806	513.5994223644641	24.574	0.072407	24.562	24.538	24.61	-0.012392	1401	34	0.77473325	0.02036959	0.7732138	469.63055	0	12.347717						83	4	3	NaN	NaN	NaN	0.75884	1	19651	19651		3.5945	3.2142	1	6177			2842	1395	1660	1690	2226	2226					0.03161727531778524
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7447817676001	2	553.744782	1105.47501	2.0527	0.0011367	-1.6219	-0.00089815	0.43077	0.00023854	553.7439637903362	18.58	0.21589	18.58	18.532	18.748	0	1272	79	0.854179	0.047925293	0.854179	346.39658	0	19.435242						358	10	3	NaN	NaN	NaN	0.030545	1	13063	13063		58.398	43.973	1	64891			2843	4413	1661	1691	2227	2227					-0.07350790287682685
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7447817676001	2	553.744782	1105.47501	1.8803	0.0010412	-1.5214	-0.00084249	0.35889	0.00019873	553.7444357524838	18.578	0.21595	18.564	18.54	18.756	-0.01395	1272	91	0.854179	0.055268586	0.8526596	346.39658	0	22.413147						404	10	4	NaN	NaN	NaN	0.057383	1	12716	12716		43.776	21.941	1	67155			2844	4413	1661	1691	2228	2228					-0.07350790287682685
DYMNLLGMIF	10	Oxidation (M)	_DYM(Oxidation (M))NLLGMIF_		DYM(0.999)NLLGM(0.001)IF		DYM(32)NLLGM(-32)IF	0	0	1		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7881350262501	2	616.788135	1231.56172	0.47211	0.00029119	-3.43	-0.0021156	-2.9579	-0.0018244	616.7855019760477	41.209	0.096195	41.209	41.185	41.281	0	1164	37	0.9204082	0.022033453	0.9204082	372.7837	0	8.924011						106	5	3	NaN	NaN	NaN	0.10581	1	17296	17296		45.165	26.001	2	7110.6			2845	1549	1662	1692	2229	2229		178;179			-0.0448012705749079
DYMNLLGMIF	10	Oxidation (M)	_DYMNLLGM(Oxidation (M))IF_		DYMNLLGM(1)IF		DYM(-34)NLLGM(34)IF	0	0	1		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7881350262501	2	616.788135	1231.56172	0.35756	0.00022054	-1.5577	-0.0009608	-1.2002	-0.00074026	616.7871467921246	40.416	0.096199	40.416	40.392	40.488	0	1164	40	0.9204082	0.023868322	0.9204082	372.7837	0	9.667145						139	5	4	NaN	NaN	NaN	0.047882	1	17297	17297		53.14	28.578	2	13954			2846	1549	1662	1692	2230	2230		178;179			-0.0448012705749079
DYMNLLGMIF	10	Oxidation (M)	_DYMNLLGM(Oxidation (M))IF_		DYMNLLGM(1)IF		DYM(-46)NLLGM(46)IF	0	0	1		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.7881350262501	2	616.788135	1231.56172	0.56143	0.00034629	-2.7365	-0.0016878	-2.175	-0.0013415	616.7870413539923	40.39	0.12017	40.397	40.349	40.469	0.0067558	1161	40	0.9222442	0.02386576	0.92072475	373.5273	0	9.666107						170	6	4	NaN	NaN	NaN	0.039609	1	16573	16573		55.592	33.757	2	15761			2847	1549	1662	1692	2231	2231		178;179			-0.0448012705749079
DYMNLLGMIF	10	2 Oxidation (M)	_DYM(Oxidation (M))NLLGM(Oxidation (M))IF_		DYM(1)NLLGM(1)IF		DYM(58)NLLGM(58)IF	0	0	2		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.7855923373002	2	624.785592	1247.55663	1.3117	0.00081956	-2.7432	-0.0017139	-1.4314	-0.00089434	624.7840393218814	36.229	0.072353	36.229	36.181	36.254	0	1152	49	0.92775106	0.029362142	0.92775106	375.7043	0	11.890564						131	4	4	NaN	NaN	NaN	0.032813	1	17706	17706		58.398	27.788	1	22159			2848	1549	1662	1693	2232	2232		178;179			-0.05724430920076884
DYMNLLGMIF	10	2 Oxidation (M)	_DYM(Oxidation (M))NLLGM(Oxidation (M))IF_		DYM(1)NLLGM(1)IF		DYM(66)NLLGM(66)IF	0	0	2		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.7855923373002	2	624.785592	1247.55663	1.0703	0.00066874	-2.6064	-0.0016285	-1.5361	-0.00095973	624.783767077486	36.228	0.09647	36.229	36.181	36.277	0.0011024	1149	43	0.92958635	0.025691867	0.9280669	376.4475	0	10.404236						163	5	4	NaN	NaN	NaN	0.013726	1	16965	16965		66.481	40.68	1	29429			2849	1549	1662	1693	2233	2233		178;179			-0.05724430920076884
DYMNLLGMIF	10	Unmodified	_DYMNLLGMIF_					0	0	0		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.7906777152001	2	608.790678	1215.5668	0.13374	8.1418E-05	-0.22455	-0.0001367	-0.090811	-5.5285E-05	608.7905075570479	46.652	0.095924	46.662	46.59	46.686	0.0098152	1173	25	0.91489893	0.014693737	0.9133795	370.60635	0	5.952118						54	5	2	NaN	NaN	NaN	0.50283	1	16197	16197		19.336	8.7315	1	3103			2850	1549	1662	1694	2234	2234					-0.03235823194859222
DYMVNQMK	8	Unmodified	_DYMVNQMK_					0	0	0			REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7306201473501	2	514.73062	1027.44669	1.2138	0.0006248	-0.68132	-0.0003507	0.53251	0.0002741	514.7305435389155	37.602	0.16853	37.602	37.53	37.699	0	1149	46	0.92958635	0.027528465	0.92958635	377.32892	0	11.174133						229	8	3	NaN	NaN	NaN	0.78967	1	9648	9648		10.605	1.4818	1	21631	+		2851	9873	1663	1695	2235	2235					-0.06593811468610511
DYMYLRQLF	9	Unmodified	_DYMYLRQLF_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8077163754	2	624.807716	1247.60088	1.2145	0.00075884	-2.082	-0.0013009	-0.8675	-0.00054202	624.8075490159029	30.56	0.12069	30.56	30.535	30.656	0	1131	55	0.94059354	0.03301817	0.94059354	380.9049	0	13.371124						156	6	3	NaN	NaN	NaN	0.14787	1	17715	17715		28.896	20.651	1	18982			2852	1928	1664	1696	2236	2236					-0.01301658711622622
DYMYLRQLF	9	Unmodified	_DYMYLRQLF_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8077163754	2	624.807716	1247.60088	0.65178	0.00040723	-2.6889	-0.00168	-2.0371	-0.0012728	624.8075328291433	30.583	0.1689	30.577	30.456	30.625	-0.0057545	1131	52	0.94059354	0.031178772	0.93907416	380.9049	0	12.626251						201	8	4	NaN	NaN	NaN	0.054111	1	16971	16971		45.165	26.001	1	22058			2853	1928	1664	1696	2237	2237					-0.01301658711622622
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.2558395929001	2	570.25584	1138.49713	1.4901	0.00084974	-1.3763	-0.00078482	0.11386	6.4929E-05	570.2548297624237	34.903	0.2411	34.903	34.855	35.096	0	1272	79	0.854179	0.047899425	0.854179	346.27283	0	19.417786						423	11	5	NaN	NaN	NaN	2.212E-07	1	14387	14387		133.34	80.719	1	178480			2854	2381	1665	1697	2238	2238					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1139.5044027192	1	1139.5044	1138.49713	2.0598	0.0023471	0.26497	0.00030193	2.3248	0.0026491	1139.5042107111537	34.903	0.26523	34.903	34.855	35.12	0	60	100	1.582944	0.05829537	1.582944	320.85565	0	11.816223						433	12	4	NaN	NaN	NaN	0.0042638	1	14389	14389		104.2	58.372	1	69346			2855	2381	1665	1697	2239	2239					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.2558395929001	2	570.25584	1138.49713	1.2888	0.00073493	-0.72557	-0.00041376	0.5632	0.00032117	570.2554476051173	34.901	0.16882	34.901	34.853	35.022	-4.5776E-05	1269	70	0.8560222	0.04237485	0.85450274	347.02005	0	17.178192						438	8	5	NaN	NaN	NaN	2.212E-07	1	13920	13920		133.34	83.381	1	173620			2856	2381	1665	1697	2240	2240					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1139.5044027192	1	1139.5044	1138.49713	1.5786	0.0017988	0.54338	0.00061918	2.1219	0.002418	1139.504996913946	34.901	0.21709	34.901	34.853	35.07	-4.5776E-05	60	82	1.582944	0.0476861	1.5814246	320.85565	0	9.665741						393	10	3	NaN	NaN	NaN	2.212E-07	1	13921	13921		133.34	85.861	1	73533			2857	2381	1665	1697	2241	2241					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.2558395929001	2	570.25584	1138.49713	1.6264	0.00092748	0.50843	0.00028994	2.1349	0.0012174	570.2557215623891	36.3	0.12045	36.301	36.229	36.349	0.0011024	1275	37	0.85233563	0.022117019	0.8508162	345.52554	0	8.965942						87	6	2	NaN	NaN	NaN	0.070055	1	13922	13922		40.154	28.105	1	5733.9			2858	2381	1665	1697	2242	2242					-0.06658242547609916
DYNFVFTSF	9	Unmodified						0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.25584	1138.49713	2.0312	0.0011583	2.2927	0.0013075	4.3239	0.0024657	570.2555767648839	36.567	0.024136	36.567	36.567	36.591	0	1275	28	0.85233563	0.016590416	0.85233563	345.52554		6.725525	0.13293	0.0013766	0.00075972	NaN	40.154	28	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585.8			2859	2381	1665	1697							-0.06658242547609916
DYNFVFTSF	9	Unmodified						0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.25584	1138.49713	1.2365	0.00070512	-3.0302	-0.001728	-1.7937	-0.0010229	570.2537856032245	35.07	0.096512	35.07	35.07	35.167	-4.5776E-05	1275	34	0.85233563	0.020277202	0.8508162	345.52557		8.220123	0.083646	-0.0017633	-0.0016814	NaN	133.34	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4949.2			2860	2381	1665	1697							-0.06658242547609916
DYNYNPDYTVY	11	Unmodified	_DYNYNPDYTVY_					0	0	0			REV__CAND1|p.L305V|1|0.1|ENSG00000111530|chr12:67299008-67299008|C/G|missense_variant	REV__CAND1|p.L305V|1|0.1|ENSG00000111530|chr12:67299008-67299008|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.7935144867	2	713.793514	1425.57248	1.322	0.00094365	-5.9554	-0.0042509	-4.6334	-0.0033073	713.7911280678966	34.227	0.048248	34.225	34.201	34.249	-0.0012474	1071	46	0.977233	0.027448475	0.97571355	395.20123	0	11.100403						57	3	2	NaN	NaN	NaN	0.77797	1	19292	19292		0.59723	0.081187	1	4822.4	+		2861	8174	1666	1698	2243	2243					-0.12328729877845035
DYPEKYFFLI	10	Unmodified	_DYPEKYFFLI_					0	0	0		ENSG00000026652|ENST00000320285|AGPAT4;ENST00000436279.1_1_6:161570255-161575330:-|nuORF	ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.8369967436001	2	667.836997	1333.65944	1.0493	0.00070074	-2.3036	-0.0015384	-1.2543	-0.00083767	667.8354214094591	33.938	0.21724	33.938	33.89	34.107	0	1095	55	0.9625867	0.032964826	0.9625867	389.53583	0	13.340057						409	10	5	NaN	NaN	NaN	0.12314	1	19309	19309		42.779	23.661	1	99375			2862	479	1667	1699	2244	2244					0.005957211345275937
DYPEKYFFLI	10	Unmodified	_DYPEKYFFLI_					0	0	0		ENSG00000026652|ENST00000320285|AGPAT4;ENST00000436279.1_1_6:161570255-161575330:-|nuORF	ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.8369967436001	2	667.836997	1333.65944	1.1916	0.00079579	-1.9701	-0.0013157	-0.7785	-0.00051991	667.8354489028768	33.937	0.24134	33.936	33.887	34.129	-0.0012474	1092	55	0.9644182	0.03296125	0.96289873	390.27698	0	13.338623						411	11	5	NaN	NaN	NaN	0.20007	1	18446	18446		35.523	11.123	1	105910			2863	479	1667	1699	2245	2245					0.005957211345275937
DYPPGLLIAF	10	Unmodified	_DYPPGLLIAF_					0	0	0		nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3000501313002	2	553.30005	1104.58555	1.1275	0.00062383	2.2546	0.0012475	3.3821	0.0018713	553.3011624575893	26.843	0.31413	26.843	26.77	27.084	0	1221	88	0.885486	0.05337721	0.885486	359.0961	0	21.646362						459	14	4	NaN	NaN	NaN	0.1877	1	13049	13049		36.586	4.1337	1	64715			2864	6191	1668	1700	2246	2246					0.03743797762876966
DYPPGLLIAF	10	Unmodified						0	0	0		nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.30005	1104.58555	1.1414	0.00063156	2.1052	0.0011648	3.2466	0.0017964	553.3012691575979	26.891	0.24135	26.88	26.808	27.049	-0.010643	1221	88	0.885486	0.05337143	0.88396657	359.0961		21.644012	0.018416	-6.1736E-05	-0.00075972	NaN	36.586	447	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59015			2865	6191	1668	1700							0.03743797762876966
DYPRYLFEI	9	Unmodified	_DYPRYLFEI_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3058637907001	2	608.305864	1214.59717	1.0147	0.00061722	-3.407	-0.0020725	-2.3924	-0.0014553	608.3032741353052	30.632	0.16893	30.632	30.56	30.728	0	1152	70	0.92775106	0.0422104	0.92775106	375.8159	0	17.098694						362	8	5	NaN	NaN	NaN	0.040769	1	16841	16841		50.831	26.269	1	101120			2866	357	1669	1701	2247	2247					-0.0015400521381252474
DYPRYLFEI	9	Unmodified	_DYPRYLFEI_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3058637907001	2	608.305864	1214.59717	0.8017	0.00048768	-2.9592	-0.0018001	-2.1575	-0.0013124	608.3040469366002	30.631	0.28951	30.625	30.553	30.842	-0.0057545	1146	67	0.93142134	0.040368617	0.9299019	377.30267	0	16.35263						367	13	3	NaN	NaN	NaN	0.03533	1	16172	16172		53.14	30.023	1	110360			2867	357	1669	1701	2248	2248					-0.0015400521381252474
DYQFLFRGKEF	11	Unmodified	_DYQFLFRGKEF_					0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3617016479001	2	725.361702	1448.70885	1.7331	0.0012572	-9.7785	-0.007093	-8.0454	-0.0058358	725.3549072552199	30.173	0.19306	30.173	30.125	30.318	0	1008	67	1.0156195	0.040181935	1.0156195	410.66205	0	16.247437						305	9	3	NaN	NaN	NaN	0.13649	1	20378	20378		36.235	5.0368	1	88622	+		2868	8538	1670	1702	2249	2249					0.002444291433221224
DYQFLFRGKEF	11	Unmodified	_DYQFLFRGKEF_					0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3617016479001	2	725.361702	1448.70885	1.1071	0.00080308	-9.9049	-0.0071846	-8.7977	-0.0063815	725.3545927245448	30.172	0.26543	30.166	30.094	30.359	-0.0064106	1005	73	1.0174452	0.043834865	1.0159258	411.4003	0	17.724457						338	12	3	NaN	NaN	NaN	0.13649	1	19404	19404		36.235	3.4568	1	85599	+		2869	8538	1670	1702	2250	2250					0.002444291433221224
DYQFLFRGKEF	11	Unmodified						0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	725.361702	1448.70885	1.7331	0.0012572	-9.7785	-0.007093	-8.0454	-0.0058358	725.3549072552199	30.173	0.19306	30.173	30.125	30.318	0	1008	67	1.0156195	0.040181935	1.0156195	410.66205		16.247437	0.0036914	7.0861E-05	-0.00015316	NaN	36.235	305	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88622	+		2870	8538	1670	1702							0.002444291433221224
DYQFLFRGKEF	11	Unmodified						0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	725.361702	1448.70885	1.1071	0.00080308	-9.9049	-0.0071846	-8.7977	-0.0063815	725.3545927245448	30.172	0.26543	30.166	30.094	30.359	-0.0064106	1005	73	1.0174452	0.043834865	1.0159258	411.4003		17.724457	-0.0036914	-0.00011241	0.00015316	NaN	36.235	338	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85599	+		2871	8538	1670	1702							0.002444291433221224
DYQWLRQE	8	Unmodified	_DYQWLRQE_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2698126354001	2	569.269813	1136.52507	1.8676	0.0010632	4.892	0.0027849	6.7596	0.003848	569.2720336982278	22.187	0.048277	22.187	22.139	22.187	0	1221	49	0.885486	0.029441535	0.885486	358.9717	0	11.935455						66	3	2	NaN	NaN	NaN	0.80692	1	14330	14330		8.2903	1.4271	1	6662.1			2872	2278;6807	1671	1703	2251	2251					-0.03772919567518329
DYSFGGGA	8	Unmodified	_DYSFGGGA_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3100600079002	1	773.31006	772.302784	1.8061	0.0013967	5.6987	0.0044069	7.5048	0.0058035	773.3148964144971	24.261	0.096498	24.261	24.237	24.333	0	561	205	1.2855089	0.12240052	1.2855089	262.04297	0	24.950607						468	5	5	NaN	NaN	NaN	0.15767	1	4383	4383		53.324	14.716	1	250820			2873	3634	1672	1704	2252	2252					-0.0924757391287585
DYSFGGGA	8	Unmodified	_DYSFGGGA_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.3100600079002	1	773.31006	772.302784	1.912	0.0014786	5.4993	0.0042527	7.4113	0.0057313	773.3145668665275	24.26	0.09655	24.248	24.224	24.32	-0.012749	558	196	1.2873057	0.11699426	1.2857863	262.40924	0	23.848541						386	5	5	NaN	NaN	NaN	0.15767	1	4309	4309		53.324	11.864	1	199530			2874	3634	1672	1704	2253	2253					-0.0924757391287585
DYSLFLVDTED	11	Unmodified	_DYSLFLVDTED_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.7982655136001	2	658.798266	1315.58198	1.454	0.00095787	-4.7744	-0.0031454	-3.3204	-0.0021875	658.7948725067984	24.285	0.26537	24.285	24.237	24.502	0	1116	109	0.94976085	0.06597942	0.94976085	384.3997	0	26.70404						726	12	5	NaN	NaN	NaN	0.14658	1	19038	19038		35.296	0.8425	1	233390			2875	300	1673	1705	2254	2254					-0.06318961592319283
DYSLTSADL	9	Unmodified	_DYSLTSADL_					0	0	0		ENST00000561125.2_1_15:100246921-100252973:+|nuORF;nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-7|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078|MEF2A	ENST00000561125.2_1_15:100246921-100252973:+|nuORF	ENST00000561125.2_1_15:100246921-100252973:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4520327977001	1	984.452033	983.444756	1.7229	0.0016961	-6.407	-0.0063073	-4.684	-0.0046112	984.4459240570177	24.261	0.048231	24.261	24.237	24.285	0	306	262	1.4375578	0.15447247	1.4375578	291.9366	0	31.369995						272	3	3	NaN	NaN	NaN	0.39244	1	7997	7997		14.042	1.0388	1	42666			2876	728	1674	1706	2255	2255					-0.047628256812231484
DYSPYFKT	8	Unmodified	_DYSPYFKT_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.4672889314	1	1020.46729	1019.46001	2.2031	0.0022482	-0.25834	-0.00026363	1.9448	0.0019846	1020.4677361311674	24.261	0.048231	24.261	24.237	24.285	0	207	94	1.496219	0.05504167	1.496219	303.701	0	11.172302						168	3	3	NaN	NaN	NaN	0.63138	1	9337	9337		23.334	10.747	1	17903		+	2877	187	1675	1707	2256	2256					-0.04893914093383955
DYSPYFKT	8	Unmodified	_DYSPYFKT_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.4672889314	1	1020.46729	1019.46001	1.7251	0.0017604	0.72644	0.00074131	2.4515	0.0025017	1020.4681181853302	24.26	0.024132	24.248	24.248	24.272	-0.012749	207	97	1.496219	0.056826234	1.4946996	303.701	0	11.534546						141	2	3	NaN	NaN	NaN	0.6117	1	9148	9148		24.562	13.014	1	15835		+	2878	187	1675	1707	2257	2257					-0.04893914093383955
DYSPYFKT	8	Unmodified						0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1020.46729	1019.46001	1.7744	0.0018107	-4.3733	-0.0044628	-2.5989	-0.0026521	1020.4625020533855	24.454	0.12075	24.441	24.393	24.513	-0.012749	249	46	1.4713576	0.026655674	1.4698381	298.65466		5.410553	0.090022	-0.001716	-0.01319	NaN	23.334	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9412.6		+	2879	187	1675	1707							-0.04893914093383955
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892001	2	567.279315	1132.54408	2.5573	0.0014507	-2.328	-0.0013206	0.22932	0.00013009	567.2773132050627	24.285	0.38595	24.285	24.213	24.598	0	1212	442	0.8910048	0.2717741	0.8910048	361.22424	0	110.18057						2110	17	6	NaN	NaN	NaN	0.022082	1	14174	14174		69.363	41.574	1	7361500		+	2880	187	1676	1708	2258	2258					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892001	2	567.279315	1132.54408	1.9413	0.0011013	-0.89126	-0.0005056	1.0501	0.00059568	567.278645720806	24.213	0.024174	24.213	24.188	24.213	0	1209	82	0.892844	0.04967457	0.892844	361.96988	0	20.138672						80	2	2	NaN	NaN	NaN	0.0021374	1	14177	14177		110.61	70.452	1	282830		+	2881	187	1676	1708	2259	2259					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.5513529118	1	1133.55135	1132.54408	1.9093	0.0021643	-0.2275	-0.00025789	1.6818	0.0019064	1133.5522141987267	24.237	0.072357	24.237	24.237	24.309	0	648	91	1.2333171	0.054063678	1.2333171	250.00359	0	10.959137						103	4	2	NaN	NaN	NaN	0.14227	1	14180	14180		29.706	14.531	1	13018		+	2882	187	1676	1708	2260	2260					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.5513529118	1	1133.55135	1132.54408	2.2946	0.002601	-0.45709	-0.00051813	1.8375	0.0020829	1133.5511863464076	24.261	0.14475	24.261	24.237	24.381	0	66	316	1.579413	0.18615603	1.579413	320.1601	0	37.735382						803	7	5	NaN	NaN	NaN	0.00012629	1	14182	14182		121.31	88.857	1	219030		+	2883	187	1676	1708	2261	2261					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892001	2	567.279315	1132.54408	2.7726	0.0015729	-1.6946	-0.00096132	1.078	0.00061154	567.2778750158427	24.285	0.41028	24.272	24.175	24.586	-0.012749	1212	442	0.8910048	0.2716859	0.88948536	361.22424	0	110.144745						2477	18	6	NaN	NaN	NaN	0.0014219	1	13726	13726		112.76	70.443	1	8090800		+	2884	187	1676	1708	2262	2262					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5513529118	1	1133.55135	1132.54408	1.1721	0.0013287	0.42684	0.00048384	1.599	0.0018125	1133.5512078242416	24.285	0.09655	24.272	24.224	24.32	-0.012749	648	118	1.2333171	0.07028651	1.2317977	250.00359	0	14.247681						105	5	2	NaN	NaN	NaN	0.53237	1	13728	13728		8.2775	0.73717	1	15932		+	2885	187	1676	1708	2263	2263					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5513529118	1	1133.55135	1132.54408	1.4412	0.0016337	0.41741	0.00047315	1.8586	0.0021069	1133.551909105734	24.26	0.09655	24.248	24.224	24.32	-0.012749	1008	577	1.0156195	0.34888303	1.0141001	205.87448	0	70.7215						1283	5	3	NaN	NaN	NaN	0.29341	1	13730	13730		19.336	12.473	1	154180		+	2886	187	1676	1708	2264	2264					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5513529118	1	1133.55135	1132.54408	1.4788	0.0016763	0.6228	0.00070598	2.1016	0.0023822	1133.5523030617007	24.26	0.16895	24.248	24.224	24.393	-0.012749	63	355	1.5811787	0.20937085	1.5796592	320.518	0	42.441193						686	8	4	NaN	NaN	NaN	0.00016172	1	13731	13731		119.15	76.833	1	170120		+	2887	187	1676	1708	2265	2265					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892001	2	567.279315	1132.54408	2.0834	0.0011819	0.79519	0.00045109	2.8786	0.001633	567.279889098006	25.467	0.12064	25.455	25.382	25.503	-0.012011	1215	73	0.8891654	0.0441671	0.88764596	360.47852	0	17.905884						164	5	2	NaN	NaN	NaN	0.028404	1	13733	13733		61.199	29.638	1	231090		+	2888	187	1676	1708	2266	2266					-0.016893829964601537
DYSPYFKTI	9	Unmodified	_DYSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892001	2	567.279315	1132.54408	1.3242	0.0007512	2.7888	0.001582	4.113	0.0023332	567.7849295186697	20.261	0.19255	20.246	20.174	20.367	-0.014141	1224	103	0.883646	0.062583566	0.88212657	358.24088	0	25.372131						227	9	2	NaN	NaN	NaN	0.11656	1	13735	13735		33.425	16.567	1	33527		+	2889	187	1676	1708	2267	2267					-0.016893829964601537
DYSPYFKTI	9	Unmodified						0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.279315	1132.54408	1.7744	0.0010066	-0.24785	-0.0001406	1.5265	0.00086596	567.7822004479896	20.237	0.19229	20.237	20.141	20.333	0	1224	97	0.883646	0.058895826	0.883646	358.24088		23.877075	-0.0048383	-0.0017631	0.00075972	NaN	33.425	210	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30408		+	2890	187	1676	1708							-0.016893829964601537
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7847642078501	2	550.784764	1099.55498	1.2815	0.00070584	1.2832	0.00070677	2.5647	0.0014126	550.7851291560601	27.181	0.26546	27.181	27.133	27.398	0	1233	82	0.87812483	0.049701393	0.87812483	356.13095	0	20.1568						400	12	4	NaN	NaN	NaN	0.013281	1	12830	12830		82.96	59.11	1	100260			2891	5500	1677	1709	2268	2268					0.009180193778320245
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7847642078501	2	550.784764	1099.55498	1.2231	0.00067366	0.13036	7.1802E-05	1.3535	0.00074546	550.7846954367471	27.18	0.19308	27.17	27.146	27.339	-0.010124	1230	88	0.8799654	0.05337721	0.878446	356.87744	0	21.647583						381	9	4	NaN	NaN	NaN	6.5392E-05	1	12497	12497		125.02	72.396	1	95326			2892	5500	1677	1709	2269	2269					0.009180193778320245
DYSTHWNDLLF	11	Unmodified	_DYSTHWNDLLF_					0	0	0		nc|ENSG00000120889|O14763-3|TNFRSF10B;ENST00000523504.5_1_8:22880186-22926453:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.8198666229501	2	705.819867	1409.62518	0.33695	0.00023783	-2.3641	-0.0016686	-2.0271	-0.0014308	705.8182695069298	31.404	0.072412	31.404	31.356	31.428	0	1080	49	0.9717421	0.029289424	0.9717421	393.0234	0	11.846191						88	4	2	NaN	NaN	NaN	0.50669	1	20142	20142		18.233	10.551	1	9430.7			2893	2276	1678	1710	2270	2270					-0.06324727024366439
DYSTHWNDLLF	11	Unmodified	_DYSTHWNDLLF_					0	0	0		nc|ENSG00000120889|O14763-3|TNFRSF10B;ENST00000523504.5_1_8:22880186-22926453:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.8198666229501	2	705.819867	1409.62518	0.71849	0.00050712	-0.35896	-0.00025336	0.35953	0.00025376	706.3207347499634	31.403	0.072386	31.398	31.374	31.446	-0.0050716	1077	43	0.9735726	0.02562821	0.9720532	393.76373	0	10.3654175						93	4	3	NaN	NaN	NaN	0.69656	1	19190	19190		7.6826	1.7628	1	7364.9			2894	2276	1678	1710	2271	2271					-0.06324727024366439
DYSWLAFT	8	Unmodified	_DYSWLAFT_					0	0	0			REV__ENST00000486641.2_1_9:15874547-16020617:+|nuORF	REV__ENST00000486641.2_1_9:15874547-16020617:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.4567242451	1	1002.45672	1001.44945	2.0095	0.0020144	0.58684	0.00058828	2.5963	0.0026027	1002.4573940693755	24.261	0.048231	24.261	24.237	24.285	0	222	463	1.4873441	0.27420795	1.4873441	301.97205	0	55.671814						970	3	5	NaN	NaN	NaN	0.30832	1	8639	8639		41.46	4.1577	1	454320	+		2895	12428	1679	1711	2272	2272					-0.05121896747812116
DYTENTDR	8	Unmodified	_DYTENTDR_					0	0	0			REV__ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	REV__ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.21216037075	2	507.21216	1012.40977	1.8439	0.00093523	-11.604	-0.0058857	-9.7602	-0.0049505	507.7082000723996	25.298	0.096455	25.286	25.238	25.334	-0.012011	1335	46	0.8154261	0.027707577	0.81390667	331.0551	0	11.249023						85	5	2	NaN	NaN	NaN	0.77489	1	8895	8895		12.588	4.2976	1	5932.4	+		2896	8119	1680	1712	2273	2273					-0.09594068489184338
DYTENTDR	8	Unmodified						0	0	0			REV__ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	REV__ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	507.21216	1012.40977	1.8439	0.00093523	-11.604	-0.0058857	-9.7602	-0.0049505	507.7082000723996	25.298	0.096455	25.286	25.238	25.334	-0.012011	1335	46	0.8154261	0.027707577	0.81390667	331.0551		11.249023	0.0059027	0.00041421	0.00016407	NaN	12.588	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5932.4	+		2897	8119	1680	1712							-0.09594068489184338
DYTEQPSRF	9	Unmodified	_DYTEQPSRF_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7592777388501	2	571.759278	1141.504	0.78861	0.0004509	-10.445	-0.0059722	-9.6567	-0.0055213	571.7536124081382	30.534	0.19303	30.529	30.505	30.698	-0.0057545	1251	61	0.8670771	0.03682977	0.8655577	351.4905	0	14.92981						177	9	3	NaN	NaN	NaN	0.44082	1	14023	14023		12.049	2.9255	1	14847	+		2898	8455	1681	1713	2274	2274					-0.06108929667038865
DYTEQPSRF	9	Unmodified						0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.759278	1141.504	0.78861	0.0004509	-10.445	-0.0059722	-9.6567	-0.0055213	571.7536124081382	30.534	0.19303	30.529	30.505	30.698	-0.0057545	1251	61	0.8670771	0.03682977	0.8655577	351.4905		14.92981	-0.0033717	-0.00019836	0.0010824	NaN	12.049	177	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14847	+		2899	8455	1681	1713							-0.06108929667038865
DYTESYLAGYS	11	Unmodified	_DYTESYLAGYS_					0	0	0		tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	tr|U7SEA4|U7SEA4_FUSNUHemolysinactivation/secretionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02368PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.76950807415	2	634.769508	1267.52446	2.3555	0.0014952	6.0075	0.0038134	8.363	0.0053086	634.7733644833271	25.949	0.048256	25.938	25.938	25.986	-0.0116	1149	46	0.92958635	0.027534425	0.9280669	376.38257	0	11.148499						53	3	2	NaN	NaN	NaN	0.7072	1	17359	17359		6.9844	0.12115	1	10275			2900	13723	1682	1714	2275	2275					-0.09859803797894529
DYTGALAVF	9	Unmodified	_DYTGALAVF_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4723743093	1	956.472374	955.465098	0.77748	0.00074364	-0.58827	-0.00056266	0.18921	0.00018098	956.472053069856	31.284	0.16891	31.284	31.211	31.38	0	294	67	1.4446791	0.039159417	1.4446791	293.5015	0	7.955658						276	8	3	NaN	NaN	NaN	0.078597	1	7214	7214		38.918	17.083	1	53276			2901	6194	1683	1715	2276	2276					-0.014416102307677647
DYTGALAVF	9	Unmodified	_DYTGALAVF_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4723743093	1	956.472374	955.465098	1.1608	0.0011103	-0.39013	-0.00037315	0.77067	0.00073712	956.4717354757826	31.283	0.16892	31.277	31.229	31.398	-0.0050716	294	79	1.4446791	0.0462842	1.4431597	293.5015	0	9.403137						280	8	3	NaN	NaN	NaN	0.03623	1	7073	7073		52.758	21.197	1	50575			2902	6194	1683	1715	2277	2277					-0.014416102307677647
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2609249708001	2	524.260925	1046.5073	1.3369	0.00070089	0.04536	2.378E-05	1.3823	0.00072467	524.2612197518189	26.698	0.21768	26.698	26.601	26.819	0	1281	67	0.84864825	0.040578544	0.84864825	344.39233	0	16.467285						244	10	3	NaN	NaN	NaN	0.070055	1	10475	10475		40.154	24.978	1	35063			2903	2764	1684	1716	2278	2278					-0.01409634822357475
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion;ITGB4|p.F201Lfs*15|1|0.39|ENSG00000132470|chr17:75729291-75729292|-/C|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2609249708001	2	524.260925	1046.5073	1.041	0.00054574	0.75759	0.00039717	1.7986	0.00094291	524.2607692092238	26.697	0.19303	26.687	26.639	26.832	-0.010645	1278	64	0.85049206	0.0387277	0.8489726	345.14056	0	15.716217						240	9	3	NaN	NaN	NaN	0.21199	1	10266	10266		24.562	16.317	1	34797			2904	2764	1684	1716	2279	2279					-0.01409634822357475
DYTLSFWRNGK	11	Unmodified	_DYTLSFWRNGK_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.89820953569995	3	462.89821	1385.6728	1.0051	0.00046528	5.3343	0.0024692	6.3394	0.0029345	462.900665804203	25.081	0.096491	25.069	25.045	25.141	-0.012011	1380	37	0.7876915	0.022208154	0.78617203	477.9523	0	13.475372						99	5	3	NaN	NaN	NaN	0.65577	1	19012	19012		4.9007	0	1	10453			2905	2401	1685	1717	2280	2280					-0.004610280335327843
DYTSHITCRWA	11	Unmodified	_DYTSHITCRWA_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.80623631895	2	676.806236	1351.59792	1.6829	0.001139	-6.7408	-0.0045622	-5.058	-0.0034233	676.8012812595697	25.467	0.04825	25.467	25.443	25.491	0	1071	64	0.977233	0.038448572	0.977233	395.40903	0	15.557098						90	3	3	NaN	NaN	NaN	0.76803	1	19561	19561		2.3381	0.23557	1	6787.7			2906	1238	1686	1718	2281	2281					-0.06381533836429298
DYTSHITCRWA	11	Unmodified						0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	676.806236	1351.59792	1.8797	0.0012722	-5.9849	-0.0040506	-4.1052	-0.0027784	676.8020068990028	25.491	0.072395	25.479	25.455	25.527	-0.012011	1068	43	0.97906286	0.025622725	0.9775434	396.14944		10.367493	0.0059129	0.00043905	0.00015523	NaN	2.3381	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6137.2			2907	1238	1686	1718							-0.06381533836429298
DYTTWTALL	9	Unmodified	_DYTTWTALL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5357028475999	1	1083.5357	1082.52843	0.8788	0.00095221	1.359	0.0014726	2.2378	0.0024248	1083.5374628257493	35.217	0.33777	35.217	35.144	35.482	0	105	100	1.5564433	0.05835092	1.5564433	315.67953	0	11.834808						646	15	4	NaN	NaN	NaN	0.030391	1	12090	12090		58.599	30.81	1	159840			2908	856	1687	1719	2282	2282					-0.009536695135238915
DYTTWTALL	9	Unmodified	_DYTTWTALL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5357028475999	1	1083.5357	1082.52843	1.3122	0.0014219	0.27436	0.00029728	1.5866	0.0017191	1083.535396452091	35.215	0.2413	35.215	35.167	35.408	-4.5776E-05	102	85	1.5582114	0.049502015	1.556692	316.03812	0	10.040039						569	11	4	NaN	NaN	NaN	0.014943	1	11775	11775		78.398	36.613	1	153420			2909	856	1687	1719	2283	2283					-0.009536695135238915
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2849313833501	2	549.284931	1096.55531	1.5112	0.0008301	0.49926	0.00027424	2.0105	0.0011043	549.2847090933654	26.964	0.2172	26.964	26.915	27.133	0	1203	118	0.8965218	0.07179093	0.8965218	363.6043	0	29.116394						590	10	5	NaN	NaN	NaN	0.019939	1	12699	12699		72.076	27.438	1	362250			2910	1101	1688	1720	2284	2284					0.010894390976773138
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2849313833501	2	549.284931	1096.55531	1.5991	0.00087838	-0.6176	-0.00033924	0.98154	0.00053914	549.2842928928723	26.963	0.31376	26.952	26.904	27.218	-0.010645	1203	106	0.8965218	0.064413846	0.89500237	363.6043	0	26.12445						675	14	5	NaN	NaN	NaN	0.03618	1	12368	12368		52.78	26.665	1	352610			2911	1101	1688	1720	2285	2285					0.010894390976773138
DYVIEDVQGDD	11	Unmodified	_DYVIEDVQGDD_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.2698722149	2	634.269872	1266.52519	2.0894	0.0013253	5.3376	0.0033855	7.4271	0.0047108	634.2718154119989	25.974	0.19305	25.974	25.877	26.07	0	1146	55	0.93142134	0.033021748	0.93142134	377.12878	0	13.370392						120	9	2	NaN	NaN	NaN	0.40559	1	18135	18135		21.85	2.514	1	19474			2912	388	1689	1721	2286	2286					-0.0974100914884275
DYWMRVAINWN	11	Unmodified	_DYWMRVAINWN_					0	0	0			REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.3455286549502	2	734.345529	1466.6765	1.2049	0.00088485	-3.3138	-0.0024335	-2.1088	-0.0015486	734.3423060131292	26.866	0.19307	26.856	26.808	27.001	-0.010645	1023	46	1.0064877	0.02740711	1.0049683	406.92245	0	11.080688						174	9	3	NaN	NaN	NaN	0.65577	1	19469	19469		10.36	3.3758	1	19842	+		2913	12886	1690	1722	2287	2287					-0.03816681531293398
DYWMRVAINWN	11	Unmodified						0	0	0			REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	734.345529	1466.6765	1.1877	0.00087218	-2.8932	-0.0021246	-1.7055	-0.0012524	734.3443924230373	26.843	0.096531	26.843	26.819	26.915	0	1023	43	1.0064877	0.025578558	1.0064877	406.92245		10.3414	-0.0063395	0.00034994	0.00075972	NaN	10.36	124	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18312	+		2914	12886	1690	1722							-0.03816681531293398
DYWMRVAINWN	11	Unmodified						0	0	0			REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	734.345529	1466.6765	1.2049	0.00088485	-3.3138	-0.0024335	-2.1088	-0.0015486	734.3423060131292	26.866	0.19307	26.856	26.808	27.001	-0.010645	1023	46	1.0064877	0.02740711	1.0049683	406.92245		11.080688	0.0063395	-0.00026772	-0.00075972	NaN	10.36	174	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19842	+		2915	12886	1690	1722							-0.03816681531293398
DYWWKSKL	8	Unmodified	_DYWWKSKL_					0	0	0			REV__nc|ENSG00000155511|P42261-2|GRIA1	REV__nc|ENSG00000155511|P42261-2|GRIA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2900167612501	2	563.290017	1124.56548	2.4321	0.00137	-10.658	-0.0060036	-8.226	-0.0046336	563.2846144615637	23.175	0.048248	23.162	23.162	23.21	-0.013294	1221	37	0.885486	0.022078753	0.88396657	359.01752	0	8.951752						46	3	2	NaN	NaN	NaN	0.82212	1	13437	13437		6.2502	1.3405	1	3076.9	+		2916	13146	1691	1723	2288	2288					0.008180468229056714
DYYPEYKLLF	10	Unmodified	_DYYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.83445405465	2	675.834454	1349.65436	1.6432	0.0011105	-2.1658	-0.0014637	-0.52261	-0.0003532	675.8333851140887	30.487	0.31373	30.487	30.391	30.704	0	1089	112	0.96624947	0.0677793	0.96624947	390.97052	0	27.425354						968	14	7	NaN	NaN	NaN	0.043823	1	19542	19542		71.985	46.184	1	591400			2917	4038	1692	1724	2289	2289					-0.006485827281039747
DYYPEYKLLF	10	Unmodified	_DYYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.83445405465	2	675.834454	1349.65436	0.45859	0.00030993	-0.73738	-0.00049835	-0.27879	-0.00018842	676.3352636268669	31.404	0.096537	31.404	31.332	31.428	0	1086	61	0.9680805	0.036623597	0.9680805	391.71143	0	14.818878						115	5	2	NaN	NaN	NaN	0.48067	1	19543	19543		24.393	14.033	1	15442			2918	4038	1692	1724	2290	2290					-0.006485827281039747
DYYPEYKLLF	10	Unmodified	_DYYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.83445405465	2	675.834454	1349.65436	0.45766	0.0003093	-1.2439	-0.00084064	-0.78619	-0.00053134	676.3340142632011	31.451	0.096514	31.447	31.399	31.495	-0.0044155	1089	58	0.96624947	0.03479433	0.96473	390.97052	0	14.078705						174	5	3	NaN	NaN	NaN	0.68608	1	18663	18663		10.965	2.046	1	18457			2919	4038	1692	1724	2291	2291					-0.006485827281039747
DYYPEYKLLF	10	Unmodified	_DYYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.83445405465	2	675.834454	1349.65436	1.3696	0.00092563	-1.4888	-0.0010062	-0.11914	-8.0519E-05	675.8335098202965	30.486	0.36197	30.48	30.384	30.746	-0.0057545	1086	136	0.9680805	0.082416534	0.9665611	391.71143	0	33.34796						945	16	5	NaN	NaN	NaN	0.12057	1	18664	18664		58.769	36.998	1	590220			2920	4038	1692	1724	2292	2292					-0.006485827281039747
DYYPEYKLLF	10	Unmodified						0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	675.834454	1349.65436	0.25048	0.00016929	-4.9835	-0.003368	-4.7331	-0.0031988	675.8307683064536	31.693	0.096512	31.688	31.64	31.737	-0.0044174	1086	73	0.9680805	0.04395312	0.9665611	391.71146		17.784607	0.14207	-0.0020264	-0.00075972	NaN	24.393	197	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18086			2921	4038	1692	1724							-0.006485827281039747
EAAADEPAL	9	Unmodified	_EAAADEPAL_					0	0	0		ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4152533609	1	886.415253	885.407977	1.9687	0.0017451	-0.032158	-2.8506E-05	1.9365	0.0017166	886.4149054287321	19.108	0.16796	19.108	19.084	19.252	0	462	79	1.3447032	0.0465312	1.3447032	273.49734	0	9.463928						228	8	2	NaN	NaN	NaN	0.078597	1	5873	5873		38.918	5.2196	1	25895			2922	4828	1693	1725	2293	2293					-0.03931077507138525
EAAADEPAL	9	Unmodified	_EAAADEPAL_					0	0	0		ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.4152533609	1	886.415253	885.407977	1.9879	0.0017621	0.43868	0.00038886	2.4266	0.002151	886.4155082283338	18.938	0.40851	18.924	18.876	19.284	-0.014059	426	124	1.3661768	0.07337999	1.3646574	277.86484	0	14.924683						761	18	4	NaN	NaN	NaN	0.025843	1	5752	5752		64.55	3.2787	1	146290			2923	4828	1693	1725	2294	2294					-0.03931077507138525
EAAAIIAQR	9	Unmodified	_EAAAIIAQR_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.7719911836	2	471.771991	941.529429	1.2986	0.00061265	-1.6773	-0.00079128	-0.37864	-0.00017863	471.77094440514844	15.51	0.12007	15.51	15.462	15.582	0	1347	46	0.8080346	0.027719617	0.8080346	328.38516	0	11.265228						115	6	2	NaN	NaN	NaN	0.060816	1	6851	6851		42.318	16.203	1	9990.6			2924	1930	1694	1726	2295	2295					0.05632589646040742
EAAAIIAQR	9	Unmodified	_EAAAIIAQR_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.7719911836	2	471.771991	941.529429	0.74593	0.00035191	0.39813	0.00018782	1.1441	0.00053974	471.772486599109	15.484	0.11985	15.472	15.448	15.568	-0.012201	1347	40	0.8080346	0.024023652	0.8065152	328.38513	0	9.763214						82	6	2	NaN	NaN	NaN	0.27608	1	6712	6712		20.449	1.2851	1	7156.5			2925	1930	1694	1726	2296	2296					0.05632589646040742
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.2265592247	2	467.226559	932.438566	1.6718	0.00078112	-2.5318	-0.0011829	-0.86001	-0.00040182	467.2254190024071	14.093	0.31224	14.093	13.997	14.309	0	1368	85	0.7950918	0.051796556	0.7950918	323.1705	0	21.05307						590	14	5	NaN	NaN	NaN	0.052553	1	6651	6651		45.827	10.53	1	181340			2926	6287	1695	1727	2297	2297					-0.030356223937360483
EAAGEVRAM	9	Unmodified	_EAAGEVRAM_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.2265592247	2	467.226559	932.438566	0.76186	0.00035596	-0.79826	-0.00037297	-0.036404	-1.7009E-05	467.2263698795278	14.093	0.28758	14.082	14.01	14.298	-0.010672	1368	88	0.7950918	0.053643525	0.79357237	323.1705	0	21.803802						574	13	4	NaN	NaN	NaN	0.16939	1	6509	6509		27.296	4.1786	1	181190			2927	6287	1695	1727	2298	2298					-0.030356223937360483
EAAGEVRAM	9	Oxidation (M)	_EAAGEVRAM(Oxidation (M))_		EAAGEVRAM(1)		EAAGEVRAM(66)	0	0	1		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.22401653575	2	475.224017	948.43348	1.0066	0.00047837	-1.1284	-0.00053623	-0.12177	-5.7866E-05	475.22385242548734	11.91	0.36004	11.902	11.758	12.118	-0.0081854	1368	73	0.7950918	0.044392228	0.79357237	323.09134	0	18.039124						571	16	4	NaN	NaN	NaN	0.024359	1	6912	6912		66.481	24.164	1	173010			2928	6287	1695	1728	2299	2299		631			-0.04279926256356248
EAAGPKPHV	9	Unmodified	_EAAGPKPHV_					0	0	0			REV__PREX1|p.G1558E|1|0.17|ENSG00000124126|chr20:48629542-48629542|C/T|missense_variant	REV__PREX1|p.G1558E|1|0.17|ENSG00000124126|chr20:48629542-48629542|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.2456092576	2	453.245609	904.476666	0.98068	0.00044449	-0.80525	-0.00036498	0.17543	7.9513E-05	453.24511854114235	35.046	0.14477	35.046	34.998	35.143	-4.5776E-05	1422	34	0.7617651	0.020382881	0.7602457	309.7636	0	8.288483						121	7	3	NaN	NaN	NaN	0.67082	1	6036	6036		1.7022	0.031835	1	8893.4	+		2929	13298	1696	1729	2300	2300					0.02060631583231043
EAAGQDFSL	9	Unmodified	_EAAGQDFSL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.4261523982001	1	937.426152	936.418876	2.0679	0.0019385	2.8937	0.0027127	4.9616	0.0046512	937.4292299927309	23.176	0.072304	23.176	23.176	23.248	0	369	43	1.4001206	0.024988651	1.4001206	284.53116	0	5.078186						54	4	2	NaN	NaN	NaN	0.27608	1	6749	6749		20.449	1.2851	1	3549.9			2930	5157	1697	1730	2301	2301					-0.051876751328450155
EAAGQDFSL	9	Unmodified						0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	937.426152	936.418876	2.8169	0.0026406	0.24019	0.00022516	3.0571	0.0028658	937.4261706283982	23.199	0.07239	23.186	23.162	23.234	-0.013294	369	49	1.4001206	0.028549314	1.3986012	284.53116		5.8017883	0.0051102	-0.0012666	-0.00075972	NaN	20.449	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3387.3			2931	5157	1697	1730							-0.051876751328450155
EAALEAAVL	9	Unmodified	_EAALEAAVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4880243735	1	886.488024	885.480748	2.2915	0.0020314	-2.377	-0.0021072	-0.085494	-7.579E-05	886.4872119689952	26.167	0.072405	26.167	26.143	26.215	0	387	61	1.389409	0.03570938	1.389409	282.58966	0	7.2628784						108	4	2	NaN	NaN	NaN	0.29681	1	5879	5879		19.118	5.3813	1	11361			2932	561	1698	1731	2302	2302					0.033426762862859505
EAALEAAVL	9	Unmodified	_EAALEAAVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.4880243735	1	886.488024	885.480748	2.0909	0.0018536	-1.2915	-0.0011449	0.79939	0.00070865	886.4872602188061	26.191	0.09656	26.18	26.131	26.228	-0.011137	384	58	1.3911947	0.033929467	1.3896753	282.95285	0	6.9008484						131	5	3	NaN	NaN	NaN	0.043119	1	5756	5756		49.833	15.394	1	10981			2933	561	1698	1731	2303	2303					0.033426762862859505
EAALELEEL	9	Unmodified	_EAALELEEL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5146330545002	1	1016.51463	1015.50736	1.5122	0.0015372	-0.40141	-0.00040804	1.1108	0.0011292	1016.5146144269977	28.121	0.16897	28.112	28.064	28.233	-0.0089779	222	79	1.4873441	0.046151757	1.4858247	301.91528	0	9.368317						292	8	3	NaN	NaN	NaN	0.016254	1	9020	9020		76.739	2.4073	1	42417			2934	2342	1699	1732	2304	2304					0.00022320386972296546
EAALEVVL	8	Unmodified	_EAALEVVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4822107141002	1	843.482211	842.474934	1.5091	0.0012729	-1.0599	-0.00089405	0.44913	0.00037883	843.4813694342411	29.063	0.26546	29.063	29.015	29.28	0	432	85	1.3625998	0.050115943	1.3625998	277.3533	0	10.200928						370	12	3	NaN	NaN	NaN	0.67593	1	5303	5303		20.555	0	1	37713			2935	7185	1700	1733	2305	2305					0.047395777746373824
EAALEVVL	8	Unmodified	_EAALEVVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4822107141002	1	843.482211	842.474934	2.0398	0.0017205	0.55343	0.00046681	2.5932	0.0021873	843.4830211481263	28.87	0.19311	28.87	28.822	29.015	0	429	184	1.3643885	0.10929179	1.3643885	277.71738	0	22.246033						829	9	5	NaN	NaN	NaN	0.12449	1	5304	5304		59.445	9.4126	1	518050			2936	7185	1700	1733	2306	2306					0.047395777746373824
EAALEVVL	8	Unmodified	_EAALEVVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.4822107141002	1	843.482211	842.474934	1.4596	0.0012312	0.85009	0.00071704	2.3097	0.0019482	843.4831695244123	28.869	0.19308	28.861	28.813	29.006	-0.0083504	426	223	1.3661768	0.13266146	1.3646574	278.0814	0	27.002838						851	9	5	NaN	NaN	NaN	0.12449	1	5172	5172		59.445	6.1215	1	560290			2937	7185	1700	1733	2307	2307					0.047395777746373824
EAALEVVL	8	Unmodified						0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	843.482211	842.474934	0.9548	0.00080535	-0.36151	-0.00030492	0.59329	0.00050043	843.4817632023418	29.207	0.072378	29.2	29.2	29.272	-0.0077209	432	46	1.3625998	0.026832104	1.3610804	277.3533		5.4615784	0.06815	0.00042661	-0.00075972	NaN	20.555	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8408.3			2938	7185	1700	1733							0.047395777746373824
EAANKVVLQLK	11	Unmodified	_EAANKVVLQLK_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.86916253925	2	606.869163	1211.72377	1.6088	0.0009763	-0.69096	-0.00041932	0.9178	0.00055698	606.8688615884528	17.093	0.048058	17.093	17.093	17.141	0	1071	34	0.977233	0.020128906	0.977233	395.8707	0	8.154083						42	3	2	NaN	NaN	NaN	0.043578	1	16772	16772		51.467	24.171	1	3497.7			2939	4650	1701	1734	2308	2308					0.12637921011310027
EAANTSGN	8	Unmodified	_EAANTSGN_					0	0	0		ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3216873267	1	763.321687	762.314411	2.4228	0.0018493	3.0453	0.0023246	5.4681	0.0041739	763.3241630114899	26.07	0.24134	26.059	26.011	26.252	-0.011137	645	148	1.2351195	0.088337064	1.2336	251.829	0	18.011078						489	11	4	NaN	NaN	NaN	0.42133	1	4165	4165		35.296	0.85769	1	123620			2940	5273	1702	1735	2309	2309					-0.07625376889563995
EAANYQDTIGR	11	Unmodified	_EAANYQDTIGR_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.2940160132	2	619.294016	1236.57348	1.2099	0.00074928	-1.8688	-0.0011573	-0.65893	-0.00040807	619.7946822501987	15.174	0.16818	15.174	15.15	15.318	0	1218	46	0.8873258	0.02759695	0.8873258	359.36853	0	11.176819						177	8	3	NaN	NaN	NaN	0.0093124	1	17436	17436		69.961	42.664	1	26037			2941	477	1703	1736	2310	2310					-0.03534470718295779
EAANYQDTIGR	11	Unmodified	_EAANYQDTIGR_					0	0	0		ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.2940160132	2	619.294016	1236.57348	0.88042	0.00054524	-0.14108	-8.7369E-05	0.73934	0.00045787	619.2939898751541	15.172	0.23996	15.16	15.136	15.376	-0.012202	1218	49	0.8873258	0.029431999	0.8858064	359.36853	0	11.920013						295	11	4	NaN	NaN	NaN	0.18041	1	16706	16706		32.149	17.724	1	38552			2942	477	1703	1736	2311	2311					-0.03534470718295779
EAAPDGPAL	9	Unmodified	_EAAPDGPAL_					0	0	0		ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.4097740525	1	840.409774	839.402498	1.7037	0.0014318	-1.471	-0.0012362	0.23276	0.00019561	840.4099061032248	19.3	0.095949	19.3	19.276	19.372	0	498	76	1.3232021	0.04484892	1.3232021	269.34982	0	9.129425						116	5	2	NaN	NaN	NaN	0.062072	1	5261	5261		41.785	26.609	1	9370			2943	5396	1704	1737	2312	2312					-0.023627562989531725
EAAPSEAAL	9	Unmodified	_EAAPSEAAL_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4203387388001	1	858.420339	857.413062	1.8779	0.001612	0.26142	0.00022441	2.1393	0.0018364	858.4205787250548	18.41	0.19201	18.396	18.372	18.564	-0.013948	501	70	1.3214091	0.041256666	1.3198897	268.8938	0	8.395325						172	9	2	NaN	NaN	NaN	0.028349	1	5367	5367		61.271	24.685	1	14529			2944	671	1705	1738	2313	2313					-0.021347736445136434
EAASSTTGLL	10	Unmodified	_EAASSTTGLL_					0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.4836672771002	1	949.483667	948.476391	1.6449	0.0015618	-1.2356	-0.0011732	0.4093	0.00038863	949.4821063518955	20.213	0.12017	20.213	20.165	20.285	0	324	49	1.42687	0.028512955	1.42687	289.91373	0	5.7933044						132	6	2	NaN	NaN	NaN	0.2358	1	7046	7046		32.453	0	1	12772	+		2945	10903	1706	1739	2314	2314					9.1670727329074E-05
EAASSTTGLL	10	Unmodified						0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	949.483667	948.476391	1.6449	0.0015618	-1.2356	-0.0011732	0.4093	0.00038863	949.4821063518955	20.213	0.12017	20.213	20.165	20.285	0	324	49	1.42687	0.028512955	1.42687	289.91373		5.7933044	0.0071653	4.7012E-05	-0.00013117	NaN	32.453	132	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12772	+		2946	10903	1706	1739							9.1670727329074E-05
EAAVVAVAEK	10	Unmodified	_EAAVVAVAEK_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.7794818647	2	493.779482	985.544411	1.7288	0.00085367	-1.5669	-0.00077369	0.16198	7.9981E-05	493.7784651174664	15.822	0.095946	15.822	15.798	15.894	0	1365	43	0.7969414	0.025892675	0.7969414	323.66867	0	10.515991						77	5	2	NaN	NaN	NaN	0.23668	1	8073	8073		32.377	7.9766	1	7939.5			2947	5946	1707	1740	2315	2315					0.05106036723384477
EAAVVAVAEK	10	Unmodified	_EAAVVAVAEK_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.7794818647	2	493.779482	985.544411	1.6718	0.00082549	-3.1435	-0.0015522	-1.4717	-0.00072668	493.77731787189964	15.844	0.11974	15.831	15.783	15.903	-0.012611	1365	61	0.7969414	0.036969543	0.79542196	323.6687	0	15.01474						90	6	2	NaN	NaN	NaN	0.05475	1	7902	7902		52.195	19.417	1	9193.9			2948	5946	1707	1740	2316	2316					0.05106036723384477
EACRLDMESSL	11	Unmodified	_EACRLDMESSL_					0	0	0			REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.2786627622	2	627.278663	1252.54277	0.83693	0.00052499	-5.2111	-0.0032688	-4.3741	-0.0027438	627.2753335221685	33.914	0.19301	33.914	33.866	34.059	0	1155	40	0.92591566	0.023863196	0.92591566	374.9447	0	9.6633						186	9	3	NaN	NaN	NaN	0.57257	1	17833	17833		15.822	1.3969	1	27753	+		2949	12223	1708	1741	2317	2317					-0.07339708419203816
EACRLDMESSL	11	Unmodified						0	0	0			REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.278663	1252.54277	0.83693	0.00052499	-5.2111	-0.0032688	-4.3741	-0.0027438	627.2753335221685	33.914	0.19301	33.914	33.866	34.059	0	1155	40	0.92591566	0.023863196	0.92591566	374.9447		9.6633	0	0	0	NaN	15.822	186	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27753	+		2950	12223	1708	1741							-0.07339708419203816
EADFPVYF	8	Unmodified	_EADFPVYF_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENSG00000125124|ENST00000245157|BBS2;ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.4458252078001	1	987.445825	986.438549	1.4789	0.0014604	-0.60167	-0.00059412	0.87726	0.00086625	987.4452854131773	31.427	0.048256	31.423	31.399	31.447	-0.0044155	264	67	1.4624695	0.03913033	1.46095	296.98315	0	7.946167						71	3	2	NaN	NaN	NaN	0.72043	1	7918	7918		17.78	4.0433	1	5097.4			2951	2446;7606	1709	1742	2318	2318					-0.055212991220855656
EADFPVYF	8	Unmodified						0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENSG00000125124|ENST00000245157|BBS2;ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	987.445825	986.438549	1.2451	0.0012295	3.4694	0.0034259	4.7146	0.0046554	987.449481885303	31.428	0.072405	31.428	31.404	31.477	0	264	70	1.4624695	0.04092419	1.4624695	296.98312		8.310455	0.0027431	0.0019868	0.00075972	NaN	17.78	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5246.4			2952	2446;7606	1709	1742							-0.055212991220855656
EADGAAWVL	9	Unmodified	_EADGAAWVL_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4519732182001	1	931.451973	930.444697	1.8286	0.0017033	0.62692	0.00058394	2.4555	0.0022872	931.4530440763648	28.556	0.16891	28.556	28.508	28.677	0	402	82	1.3804773	0.04821539	1.3804773	280.56537	0	9.799225						200	8	3	NaN	NaN	NaN	0.074859	1	6616	6616		39.459	13.344	1	18518			2953	1056	1710	1743	2319	2319					-0.023307808905656202
EADGAAWVL	9	Unmodified	_EADGAAWVL_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4519732182001	1	931.451973	930.444697	1.0494	0.00097743	0.8469	0.00078885	1.8963	0.0017663	931.4528132698205	28.556	0.16887	28.547	28.499	28.668	-0.0083504	402	91	1.3804773	0.05356419	1.3789579	280.56537	0	10.8862915						182	8	2	NaN	NaN	NaN	0.056143	1	6477	6477		44.302	13.692	1	17548			2954	1056	1710	1743	2320	2320					-0.023307808905656202
EADNDNYEVL	10	Unmodified	_EADNDNYEVL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2514824965	2	591.251482	1180.48841	1.4762	0.00087282	6.4346	0.0038045	7.9109	0.0046773	591.2560728252013	19.228	0.11999	19.228	19.18	19.3	0	1215	46	0.8891654	0.02759695	0.8891654	360.30237	0	11.182678						85	6	2	NaN	NaN	NaN	0.71559	1	15833	15833		6.9844	1.7955	1	12303			2955	3135	1711	1744	2321	2321					-0.09461260974762808
EADPGQYRC	9	Unmodified	_EADPGQYRC_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7190983333501	2	519.719098	1037.42364	2.0033	0.0010411	-1.1513	-0.00059833	0.852	0.0004428	520.2202122187259	13.517	0.21612	13.517	13.349	13.565	0	1317	64	0.8265074	0.03878224	0.8265074	335.44543	0	15.740112						197	10	2	NaN	NaN	NaN	0.25548	1	10085	10085		21.771	11.166	1	25486			2956	4833	1712	1745	2322	2322					-0.09357114261729294
EADPGQYRC	9	Unmodified	_EADPGQYRC_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7190983333501	2	519.719098	1037.42364	2.5331	0.0013165	-1.5256	-0.00079289	1.0075	0.00052361	519.7183255333803	13.781	0.36025	13.781	13.565	13.925	0	1314	106	0.8283535	0.06463015	0.8283535	336.1947	0	26.230713						714	16	3	NaN	NaN	NaN	0.089764	1	10086	10086		37.302	19.503	1	173240			2957	4833	1712	1745	2323	2323					-0.09357114261729294
EADPGQYRC	9	Unmodified	_EADPGQYRC_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.7190983333501	2	519.719098	1037.42364	1.5627	0.00081217	-0.01781	-9.2562E-06	1.5449	0.00080291	519.7192740408697	13.781	0.38355	13.77	13.603	13.986	-0.010672	1314	97	0.8283535	0.0590744	0.8268341	336.1947	0	23.975891						680	17	3	NaN	NaN	NaN	0.13602	1	9879	9879		30.61	22.365	1	152610			2958	4833	1712	1745	2324	2324					-0.09357114261729294
EADPGQYRC	9	Unmodified						0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.719098	1037.42364	1.222	0.00063511	0.17019	8.8453E-05	1.3922	0.00072357	519.719066935347	13.565	0.14399	13.555	13.435	13.579	-0.010098	1314	73	0.8283535	0.044315398	0.8268341	336.1947		17.98581	0.019315	0.00061382	0.00016337	NaN	21.771	216	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26934			2959	4833	1712	1745							-0.09357114261729294
EADPGSAAP	9	Unmodified	_EADPGSAAP_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.357738482	1	814.357738	813.350462	2.7996	0.0022799	-1.2119	-0.00098689	1.5877	0.001293	814.3568647052194	14.021	0.40833	14.021	13.925	14.333	0	588	154	1.2693287	0.091854334	1.2693287	258.5167	0	18.707413						1472	18	3	NaN	NaN	NaN	0.074859	1	4928	4928		39.459	5.02	1	516980			2960	4630	1713	1746	2325	2325					-0.06367919712715775
EADPGSAAP	9	Unmodified	_EADPGSAAP_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.357738482	1	814.357738	813.350462	2.1888	0.0017824	-1.017	-0.00082817	1.1718	0.00095427	814.3569359493015	14.021	0.40746	14.01	13.914	14.322	-0.010672	585	151	1.2711272	0.09004843	1.2696078	258.883	0	18.339615						1516	18	4	NaN	NaN	NaN	0.021105	1	4825	4825		70.6	20.767	1	473240			2961	4630	1713	1746	2326	2326					-0.06367919712715775
EADPYKAVL	9	Unmodified	_EADPYKAVL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5251381613001	1	1005.52514	1004.51786	1.608	0.0016169	4.8676	0.0048945	6.4756	0.0065114	1005.5285112225521	20.381	0.19269	20.367	20.271	20.463	-0.014141	234	139	1.4802408	0.0817312	1.4787214	300.5174	0	16.592987						342	9	3	NaN	NaN	NaN	0.054111	1	8593	8593		45.165	19.05	1	54062			2962	989	1714	1747	2327	2327					0.01578347832048621
EADRCTACVT	10	Unmodified	_EADRCTACVT_					0	0	0		ENSG00000120949|ENST00000263932|TNFRSF8	ENSG00000120949|ENST00000263932|TNFRSF8	ENSG00000120949|ENST00000263932|TNFRSF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7260660857	2	534.726066	1067.43758	2.2762	0.0012171	-6.8942	-0.0036865	-4.618	-0.0024694	534.7230446090849	13.276	0.38433	13.276	13.18	13.565	0	1311	61	0.83019954	0.036917448	0.83019954	336.81982	0	14.977753						685	17	4	NaN	NaN	NaN	0.24484	1	11429	11429		31.675	3.8866	1	161750			2963	2282	1715	1748	2328	2328					-0.09344204824947155
EADRNPPVL	9	Unmodified	_EADRNPPVL_					0	0	0		ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	ENSG00000167447|ENST00000300917|SMG8	ENSG00000167447|ENST00000300917|SMG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7669058057	2	505.766906	1009.51926	1.9258	0.00097401	-2.0033	-0.0010132	-0.077486	-3.919E-05	505.76607081898266	17.117	0.23997	17.117	17.069	17.309	0	1323	58	0.8228144	0.03508115	0.8228144	334.06747	0	14.243164						240	11	3	NaN	NaN	NaN	0.028569	1	8958	8958		60.984	32.088	1	35646			2964	4546	1716	1749	2329	2329					0.014879819208090339
EADRNPPVL	9	Unmodified	_EADRNPPVL_					0	0	0		ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	ENSG00000167447|ENST00000300917|SMG8	ENSG00000167447|ENST00000300917|SMG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7669058057	2	505.766906	1009.51926	1.5204	0.00076895	-0.67128	-0.00033951	0.84909	0.00042944	505.7669355986886	17.138	0.2159	17.124	17.076	17.292	-0.013569	1323	52	0.8228144	0.0313918	0.82129496	334.06747	0	12.745239						266	10	3	NaN	NaN	NaN	0.31471	1	8788	8788		17.97	6.4212	1	37474			2965	4546	1716	1749	2330	2330					0.014879819208090339
EADRTAIHEVM	11	Unmodified	_EADRTAIHEVM_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.30606914345	2	636.306069	1270.59759	1.7618	0.0011211	-0.433	-0.00027552	1.3288	0.00084554	636.3056783752123	15.87	0.095894	15.87	15.846	15.942	0	1197	46	0.9001988	0.027570128	0.9001988	364.4743	0	11.162659						118	5	3	NaN	NaN	NaN	0.53563	1	18240	18240		17.198	7.5868	1	11617			2966	4489	1717	1750	2331	2331					-0.026889535562759193
EADRTAIHEVM	11	Unmodified	_EADRTAIHEVM_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.30606914345	2	636.306069	1270.59759	2.3297	0.0014824	-2.8446	-0.0018101	-0.51494	-0.00032766	636.3052194809895	15.915	0.14365	15.903	15.855	15.999	-0.012611	1194	43	0.902037	0.02573353	0.9005176	365.21857	0	10.419037						143	7	3	NaN	NaN	NaN	0.58035	1	17427	17427		15.311	4.9508	1	13860			2967	4489	1717	1750	2332	2332					-0.026889535562759193
EADRTLIYITL	11	Unmodified	_EADRTLIYITL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3639099858501	2	654.36391	1306.71327	1.5475	0.0010126	-2.1478	-0.0014055	-0.60035	-0.00039285	654.362569303179	29.112	0.1448	29.112	29.063	29.208	0	1104	67	0.9570911	0.0403077	0.9570911	387.3938	0	16.315002						494	7	5	NaN	NaN	NaN	2.5242E-08	1	18883	18883		103.01	61.225	1	352920			2968	1795	1718	1751	2333	2333					0.07217893566235034
EADRTLIYITL	11	Unmodified	_EADRTLIYITL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.3639099858501	2	654.36391	1306.71327	0.82075	0.00053707	-4.0344	-0.0026399	-3.2136	-0.0021029	654.3615965418667	30.703	0.048246	30.698	30.673	30.722	-0.0057564	1104	34	0.9570911	0.020152748	0.95557165	387.3938	0	8.157074						61	3	2	NaN	NaN	NaN	0.6678	1	18052	18052		9.5705	1.9829	1	6968.6			2969	1795	1718	1751	2334	2334					0.07217893566235034
EADRTLIYITL	11	Unmodified	_EADRTLIYITL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.3639099858501	2	654.36391	1306.71327	1.1576	0.00075746	-1.9485	-0.001275	-0.7909	-0.00051753	654.362935781895	29.111	0.24135	29.103	29.055	29.296	-0.0077209	1104	73	0.9570911	0.043962598	0.95557165	387.3938	0	17.794373						600	11	6	NaN	NaN	NaN	2.3748E-09	1	18053	18053		103.78	47.826	1	358930			2970	1795	1718	1751	2335	2335					0.07217893566235034
EADRTLIYITL	11	Unmodified						0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.36391	1306.71327	0.68339	0.00044719	-7.5898	-0.0049665	-6.9064	-0.0045193	654.3605552461257	31.066	0.072412	31.066	31.042	31.115	0	1110	37	0.95342636	0.021988392	0.95342636	385.91046		8.900055	0.18439	-0.0032194	-0.0010726	NaN	9.5705	59	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3701.1			2971	1795	1718	1751							0.07217893566235034
EADSFFKVL	9	Unmodified	_EADSFFKVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2740323460501	2	528.274032	1054.53351	1.6623	0.00087813	-1.2988	-0.0006861	0.36351	0.00019203	528.2729008840333	27.688	0.16892	27.688	27.639	27.808	0	1266	103	0.85786515	0.06269193	0.85786515	348.09827	0	25.43866						283	8	3	NaN	NaN	NaN	0.059222	1	10840	10840		42.995	21.16	1	76322			2972	4256	1719	1752	2336	2336					0.008426343491237276
EADSFFKVL	9	Unmodified	_EADSFFKVL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2740323460501	2	528.274032	1054.53351	0.90018	0.00047554	-1.2347	-0.00065225	-0.33451	-0.00017671	528.2733502021171	27.687	0.19304	27.677	27.653	27.846	-0.009552	1266	88	0.85786515	0.0534696	0.8563457	348.09827	0	21.696503						259	9	2	NaN	NaN	NaN	0.052553	1	10612	10612		45.827	23.992	1	80352			2973	4256	1719	1752	2337	2337					0.008426343491237276
EADYSYWTL	9	Unmodified	_EADYSYWTL_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENST00000486375.1_1_1:183899365-183909857:-|nuORF;ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1147.4942319634	1	1147.49423	1146.48696	2.8474	0.0032673	-0.72685	-0.00083406	2.1205	0.0024333	1147.4933687358111	29.836	0.14478	29.836	29.811	29.956	0	75	58	1.5741152	0.033560514	1.5741152	319.03943	0	6.8019714						214	7	3	NaN	NaN	NaN	0.021105	1	14668	14668		70.6	45.639	1	24509			2974	2636	1720	1753	2338	2338					-0.08042850272863689
EADYSYWTL	9	Unmodified	_EADYSYWTL_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF;ENST00000486375.1_1_1:183899365-183909857:-|nuORF;ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1147.4942319634	1	1147.49423	1146.48696	1.8811	0.0021586	-0.41801	-0.00047967	1.4631	0.0016789	1147.4937257016772	29.835	0.16888	29.828	29.803	29.972	-0.0070667	78	64	1.5723488	0.03710103	1.5708294	318.68143	0	7.5195923						265	8	3	NaN	NaN	NaN	0.032764	1	14184	14184		55.494	32.159	1	26137			2975	2636	1720	1753	2339	2339					-0.08042850272863689
EAEERDQK	8	Unmodified	_EAEERDQK_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.73580264254997	2	502.735803	1003.45705	1.2402	0.00062351	2.2282	0.0011202	3.4685	0.0017437	502.7365846727401	12.534	0.16817	12.525	12.453	12.621	-0.0088425	1299	31	0.8375814	0.018452704	0.83606195	340.09055	0	7.4925537						92	8	2	NaN	NaN	NaN	0.72013	1	8536	8536		17.799	0	1	6374.6			2976	3654	1721	1754	2340	2340					-0.04453789218189286
EAEIVADLP	9	Unmodified	_EAEIVADLP_					0	0	0			REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4935036819	1	956.493504	955.486227	2.191	0.0020956	-1.006	-0.00096224	1.1849	0.0011334	956.4914877625137	23.609	0.048256	23.596	23.572	23.621	-0.013048	306	49	1.4375578	0.028491735	1.4360384	292.0546	0	5.788391						77	3	2	NaN	NaN	NaN	0.41766	1	7076	7076		13.003	2.3979	1	6886.8	+		2977	9634	1722	1755	2341	2341					0.006703550781026024
EAEIVADLP	9	Unmodified						0	0	0			REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	956.493504	955.486227	1.7172	0.0016425	-0.65709	-0.0006285	1.0601	0.001014	956.4932875126353	23.586	0.07226	23.586	23.562	23.634	0	306	49	1.4375578	0.028497696	1.4375578	292.0546		5.789612	-0.0053765	0.0001721	0.00075972	NaN	13.003	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6386.9	+		2978	9634	1722	1755							0.006703550781026024
EAEIVADLP	9	Unmodified						0	0	0			REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	REV__ENST00000436565.2_1_13:77561342-77561690:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	956.493504	955.486227	2.191	0.0020956	-1.006	-0.00096224	1.1849	0.0011334	956.4914877625137	23.609	0.048256	23.596	23.572	23.621	-0.013048	306	49	1.4375578	0.028491735	1.4360384	292.0546		5.788391	0.0053765	-0.00016164	-0.00075972	NaN	13.003	77	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6886.8	+		2979	9634	1722	1755							0.006703550781026024
EAENYDLAL	9	Unmodified	_EAENYDLAL_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4785818991998	1	1037.47858	1036.47131	1.8258	0.0018942	-2.0169	-0.0020925	-0.19116	-0.00019833	1037.4774097141437	25.322	0.0965	25.322	25.322	25.419	0	204	67	1.4979934	0.039043188	1.4979934	303.99457	0	7.923218						112	5	2	NaN	NaN	NaN	0.11656	1	10052	10052		33.425	0.97255	1	12448			2980	6186;1275	1723	1756	2342	2342					-0.04547136789915385
EAEPEPEEAFY	11	Unmodified	_EAEPEPEEAFY_					0	0	0			REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.7747904173001	2	655.77479	1309.53503	1.0264	0.00067309	-10.283	-0.0067432	-9.2565	-0.0060702	655.7681544374182	24.188	0.12068	24.188	24.164	24.285	0	1146	76	0.93142134	0.045846224	0.93142134	376.9952	0	18.556366						148	6	3	NaN	NaN	NaN	0.65577	1	18918	18918		10.36	2.6776	1	16495	+		2981	10017	1724	1757	2343	2343					-0.10735821143452995
EAEPEPEEAFY	11	Unmodified						0	0	0			REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	655.77479	1309.53503	1.0264	0.00067309	-10.283	-0.0067432	-9.2565	-0.0060702	655.7681544374182	24.188	0.12068	24.188	24.164	24.285	0	1146	76	0.93142134	0.045846224	0.93142134	376.9952		18.556366	0.0065022	0.0014987	0.0016772	NaN	10.36	148	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16495	+		2982	10017	1724	1757							-0.10735821143452995
EAEPYDTSL	9	Unmodified	_EAEPYDTSL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4469474198	1	1024.44695	1023.43967	2.1025	0.0021539	-0.59628	-0.00061086	1.5062	0.0015431	1024.4462962967916	21.055	0.19271	21.055	21.031	21.224	0	288	88	1.4482387	0.051589012	1.4482387	293.94678	0	10.470947						420	9	3	NaN	NaN	NaN	0.0084155	1	9481	9481		95.62	50.455	1	67224			2983	4658	1725	1758	2344	2344					-0.07111129543841344
EAEPYDTSL	9	Unmodified	_EAEPYDTSL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.4469474198	1	1024.44695	1023.43967	1.3647	0.0013981	0.37961	0.00038889	1.7443	0.0017869	1024.4474914675145	21.055	0.21674	21.041	21.017	21.234	-0.014086	285	91	1.4500183	0.053370833	1.4484988	294.30795	0	10.832581						433	10	4	NaN	NaN	NaN	0.055351	1	9293	9293		44.638	13.077	1	66449			2984	4658	1725	1758	2345	2345					-0.07111129543841344
EAETPPRASCH	11	Unmodified	_EAETPPRASCH_					0	0	0		ENST00000470356.3_1_19:3572943-3574226:+|nuORF;ENST00000488973.6_1_19:3573129-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.2694866719	2	599.269487	1196.52442	1.2291	0.00073657	1.6285	0.00097589	2.8576	0.0017125	599.2707892830002	15.005	0.072055	15.005	14.957	15.029	0	1221	34	0.885486	0.02023995	0.885486	358.7559	0	8.200226						62	4	2	NaN	NaN	NaN	0.75907	1	16348	16348		3.5794	0.68995	1	4807.2			2985	7146	1726	1759	2346	2346					-0.06598082278878792
EAETPPRASCH	11	Unmodified						0	0	0		ENST00000470356.3_1_19:3572943-3574226:+|nuORF;ENST00000488973.6_1_19:3573129-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.269487	1196.52442	1.0247	0.0006141	2.4062	0.001442	3.4309	0.002056	599.27177561491	15.028	0.096252	15.016	14.944	15.04	-0.011737	1227	34	0.88180584	0.020242155	0.8802864	357.26483		8.201111	0.0054005	0.00049754	-0.0025998	NaN	3.5794	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6519.9			2986	7146	1726	1759							-0.06598082278878792
EAFDYIKQR	9	Unmodified	_EAFDYIKQR_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.3011127638	2	585.301113	1168.58767	1.8987	0.0011113	-0.80829	-0.0004731	1.0904	0.0006382	585.2999841856221	16.826	0.095833	16.813	16.765	16.861	-0.013294	1200	37	0.89836043	0.022062063	0.896841	364.07117	0	8.940918						84	5	3	NaN	NaN	NaN	0.64666	1	14906	14906		3.5698	1.4672	1	7095.3			2987	3146	1727	1760	2347	2347					0.010122265006430098
EAFEFVKQR	9	Unmodified	_EAFEFVKQR_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1;nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.30365545275	2	577.303655	1152.59276	1.9103	0.0011028	-0.4248	-0.00024524	1.4855	0.00085761	577.3041130506562	17.309	0.19179	17.309	17.237	17.429	0	1194	34	0.902037	0.02022028	0.902037	365.62033	0	8.195831						113	9	2	NaN	NaN	NaN	0.070055	1	14894	14894		40.154	28.105	1	13584			2988	2249	1728	1761	2348	2348					0.02256530363274578
EAFEFVKQR	9	Unmodified	_EAFEFVKQR_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1;nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.20486245736663	3	385.204862	1152.59276	1.8666	0.00071904	-0.041248	-1.5889E-05	1.8254	0.00070315	385.20472600443804	17.354	0.095947	17.34	17.316	17.412	-0.013569	1410	31	0.76917666	0.018524826	0.7676573	467.64777	0	11.262848						101	5	3	NaN	NaN	NaN	0.20577	1	14394	14394		27.296	11.985	1	9186.3			2989	2249	1728	1761	2349	2349					0.02256530363274578
EAFEHPNVVR	10	Unmodified	_EAFEHPNVVR_					0	0	0		ENST00000551706.1_1_12:58145281-58145962:-|nuORF;ENSG00000135446|ENST00000257904|CDK4	ENST00000551706.1_1_12:58145281-58145962:-|nuORF	ENST00000551706.1_1_12:58145281-58145962:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.87188333486665	3	399.871883	1196.59382	1.8138	0.00072529	-0.20703	-8.2785E-05	1.6068	0.0006425	399.87192205012315	15.196	0.072062	15.184	15.16	15.232	-0.012202	1410	28	0.76917666	0.016673267	0.7676573	467.44473	0	10.13269						69	4	3	NaN	NaN	NaN	0.25724	1	15715	15715		19.592	15.282	1	3921.7			2990	2944	1729	1762	2350	2350					0.0033874473217565537
EAFEHPNVVR	10	Unmodified						0	0	0		ENST00000551706.1_1_12:58145281-58145962:-|nuORF;ENSG00000135446|ENST00000257904|CDK4	ENST00000551706.1_1_12:58145281-58145962:-|nuORF	ENST00000551706.1_1_12:58145281-58145962:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	399.871883	1196.59382	1.471	0.00058819	-1.0762	-0.00043033	0.39479	0.00015787	399.8715282789997	15.15	0.048054	15.15	15.126	15.174	0	1410	25	0.76917666	0.01481992	0.76917666	467.44473		9.006348	-0.017211	-0.00061104	0.00075972	NaN	19.592	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2135.9			2991	2944	1729	1762							0.0033874473217565537
EAFETFINKR	10	Unmodified	_EAFETFINKR_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.8874219487333	3	418.887422	1253.64044	1.7929	0.00075101	-1.5821	-0.00066272	0.21077	8.8288E-05	419.22152308293016	19.108	0.047995	19.108	19.108	19.156	0	1488	28	0.7209441	0.016718566	0.7209441	437.90582	0	10.154968						45	3	2	NaN	NaN	NaN	0.6065	1	17879	17879		14.45	9.4327	1	3243.9			2992	3983	1730	1763	2351	2351					0.023761845634680867
EAFETFINKR	10	Unmodified	_EAFETFINKR_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	418.8874219487333	3	418.887422	1253.64044	2.0021	0.00083866	-2.9623	-0.0012409	-0.96019	-0.00040221	418.8862936959755	19.178	0.072096	19.164	19.14	19.212	-0.014141	1485	28	0.72280174	0.016716719	0.7212823	439.03415	0	10.153839						43	4	2	NaN	NaN	NaN	0.77101	1	17107	17107		2.7042	1.3346	1	3208.1			2993	3983	1730	1763	2352	2352					0.023761845634680867
EAFETFINKR	10	Unmodified	_EAFETFINKR_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8274946898	2	627.827495	1253.64044	1.8724	0.0011755	-1.4272	-0.00089606	0.44512	0.00027946	627.8265596418258	19.178	0.072096	19.164	19.14	19.212	-0.014141	1134	28	0.9387595	0.016506433	0.93724006	380.14212	0	6.684143						53	4	2	NaN	NaN	NaN	0.61836	1	17108	17108		16.858	7.1123	1	3879.7			2994	3983	1730	1763	2353	2353					0.023761845634680867
EAFPHDSQL	9	Unmodified	_EAFPHDSQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2432635339001	2	522.243264	1042.47197	2.1234	0.0011089	-1.1495	-0.00060031	0.97394	0.00050863	522.2425739896242	18.074	0.31193	18.06	17.916	18.228	-0.013786	1305	73	0.83389086	0.044291377	0.8323714	338.42062	0	17.974945						479	14	4	NaN	NaN	NaN	0.060816	1	10100	10100		42.318	12.719	1	88000			2995	783	1731	1764	2354	2354					-0.04756297350195382
EAFPHDSQL	9	Unmodified						0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.243264	1042.47197	2.1377	0.0011164	-0.59317	-0.00030978	1.5445	0.0008066	522.2430054379366	18.029	0.31183	18.029	17.909	18.221	0	1305	79	0.83389086	0.047982335	0.83389086	338.42062		19.47284	-0.015586	0.00031412	0.00075972	NaN	42.318	389	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78116			2996	783	1731	1764							-0.04756297350195382
EAFSVFGQVER	11	Unmodified	_EAFSVFGQVER_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.81712696875	2	634.817127	1267.6197	1.7585	0.0011163	-1.2906	-0.00081932	0.46781	0.00029697	634.815325248154	23.803	0.096306	23.803	23.778	23.875	0	1143	88	0.9332562	0.053193092	0.9332562	377.8682	0	21.537476						156	5	2	NaN	NaN	NaN	0.12748	1	18185	18185		46.512	19.216	1	32712			2997	3586	1732	1765	2355	2355					-0.0034040581620047305
EAFVERDSL	9	Unmodified	_EAFVERDSL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.26419594125	2	533.264196	1064.51384	1.093	0.00058284	0.76999	0.00041061	1.863	0.00099345	533.2648523725952	19.082	0.12016	19.068	19.044	19.164	-0.014059	1263	55	0.85970795	0.033171892	0.8581885	348.80386	0	13.458618						176	6	4	NaN	NaN	NaN	0.37272	1	11065	11065		14.854	5.108	1	25563			2998	3126	1733	1766	2356	2356					-0.015837416616705013
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2469603158	2	540.24696	1078.47937	1.7964	0.00097049	-2.9266	-0.0015811	-1.1302	-0.00061059	540.2450546207077	30.27	0.19305	30.27	30.222	30.415	0	1299	64	0.8375814	0.038731933	0.8375814	339.7704	0	15.711853						274	9	4	NaN	NaN	NaN	0.025843	1	11895	11895		64.55	27.963	1	51630			2999	2949	1734	1767	2357	2357					-0.05673281074132319
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.486644165	1	1079.48664	1078.47937	1.8502	0.0019973	0.050824	5.4864E-05	1.901	0.0020521	1079.488692343593	30.27	0.26545	30.27	30.125	30.391	0	129	139	1.5422925	0.08145416	1.5422925	312.82422	0	16.521393						949	12	5	NaN	NaN	NaN	0.056143	1	11898	11898		44.302	13.511	1	263390			3000	2949	1734	1767	2358	2358					-0.05673281074132319
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2469603158	2	540.24696	1078.47937	1.0026	0.00054163	-3.3155	-0.0017912	-2.3129	-0.0012495	540.2448550715734	30.245	0.14475	30.238	30.214	30.359	-0.0064106	1296	64	0.8394264	0.0387277	0.83790696	340.51883	0	15.710175						281	7	4	NaN	NaN	NaN	0.094712	1	11589	11589		36.586	10.472	1	63320			3001	2949	1734	1767	2359	2359					-0.05673281074132319
EAFVWEPAM	9	Unmodified	_EAFVWEPAM_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.486644165	1	1079.48664	1078.47937	1.8494	0.0019964	-1.1578	-0.0012499	0.69155	0.00074652	1079.4874048924166	30.245	0.28956	30.238	30.142	30.431	-0.0064106	126	142	1.544062	0.08321178	1.5425426	313.18314	0	16.877869						953	13	5	NaN	NaN	NaN	0.032764	1	11592	11592		55.494	27.705	1	255830			3002	2949	1734	1767	2360	2360					-0.05673281074132319
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(120)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.24441762685	2	548.244418	1094.47428	1.3784	0.00075567	-2.8591	-0.0015675	-1.4807	-0.00081181	548.242899394477	26.77	0.19357	26.77	26.698	26.891	0	1305	64	0.83389086	0.03874451	0.83389086	338.21094	0	15.71405						217	9	2	NaN	NaN	NaN	0.00020136	1	12588	12588		116.74	66.703	1	88149			3003	2949	1734	1768	2361	2361		337			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(87)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.4815587870999	1	1095.48156	1094.47428	2.0752	0.0022733	3.4345	0.0037624	5.5097	0.0060357	1095.481224395754	26.77	0.19353	26.77	26.722	26.915	0	129	169	1.5422925	0.099140644	1.5422925	312.76642	0	20.105042						1143	9	5	NaN	NaN	NaN	0.011942	1	12590	12590		87.021	39.981	1	232790			3004	2949	1734	1768	2362	2362		337			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(91)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.24441762685	2	548.244418	1094.47428	1.2584	0.00068991	-3.5076	-0.001923	-2.2492	-0.0012331	548.2428575614384	26.794	0.14481	26.783	26.711	26.856	-0.010645	1305	49	0.83389086	0.029524446	0.8323714	338.21094	0	11.974579						304	7	5	NaN	NaN	NaN	0.01047	1	12259	12259		91.429	41.396	1	90776			3005	2949	1734	1768	2363	2363		337			-0.0691758493674115
EAFVWEPAM	9	Oxidation (M)	_EAFVWEPAM(Oxidation (M))_		EAFVWEPAM(1)		EAFVWEPAM(71)	0	0	1		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.4815587870999	1	1095.48156	1094.47428	1.7885	0.0019592	3.7556	0.0041142	5.544	0.0060734	1095.4821668387328	26.794	0.19309	26.783	26.687	26.88	-0.010645	129	169	1.5422925	0.099140644	1.540773	312.76642	0	20.105042						1076	9	5	NaN	NaN	NaN	0.021105	1	12261	12261		70.6	29.14	1	216810			3006	2949	1734	1768	2364	2364		337			-0.0691758493674115
EAGDEFEL	8	Unmodified	_EAGDEFEL_					0	0	0		nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1	nc|ENSG00000171552|Q07817-2|BCL2L1	nc|ENSG00000171552|Q07817-2|BCL2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.3836188815	1	909.383619	908.376342	2.047	0.0018615	-0.17901	-0.00016279	1.868	0.0016988	909.3834341215518	25.105	0.14474	25.093	25.069	25.214	-0.012011	438	52	1.359022	0.030412912	1.3575026	276.30267	0	6.183258						144	7	3	NaN	NaN	NaN	0.23746	1	6084	6084		47.04	13.342	1	12713			3007	4792	1735	1769	2365	2365					-0.08151070261089899
EAGDVIGVLR	10	Unmodified	_EAGDVIGVLR_					0	0	0		ENST00000477227.1_1_7:150707648-150711254:+|nuORF;ENSG00000164867|ENST00000297494|NOS3	ENST00000477227.1_1_7:150707648-150711254:+|nuORF	ENST00000477227.1_1_7:150707648-150711254:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.790380902	2	514.790381	1027.56621	2.0703	0.0010658	-2.4473	-0.0012599	-0.37707	-0.00019411	514.7893820375762	21.922	0.096395	21.922	21.898	21.994	0	1323	40	0.8228144	0.024005413	0.8228144	333.98856	0	9.744049						95	5	3	NaN	NaN	NaN	0.31689	1	9687	9687		27.046	12.621	1	8884.6			3008	4350	1736	1770	2366	2366					0.05352841471949432
EAGFLTRDSRM	11	Unmodified	_EAGFLTRDSRM_					0	0	0		tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.81406135105	2	641.814061	1281.61357	1.7986	0.0011543	-9.0167	-0.005787	-7.2181	-0.0046327	641.8092059337281	29.907	0.19302	29.9	29.828	30.021	-0.0070667	1134	70	0.9387595	0.04217851	0.93724006	380.05176	0	17.075745						498	9	5	NaN	NaN	NaN	0.29515	1	17627	17627		25.801	1.4007	1	102490			3009	13813	1737	1771	2367	2367					-0.01597247319386952
EAGFLTRDSRM	11	Unmodified						0	0	0		tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	tr|U7SQV7|U7SQV7_FUSNUSmallribosomalsubunitproteinuS9OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsIPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	641.814061	1281.61357	2.1882	0.0014044	-8.9863	-0.0057675	-6.7981	-0.0043631	641.8088381589488	29.908	0.24132	29.908	29.811	30.053	0	1131	73	0.94059354	0.044009984	0.94059354	380.79425		17.8172	0.0039928	2.1741E-05	0.0016767	NaN	25.801	457	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94259			3010	13813	1737	1771							-0.01597247319386952
EAGPDAVL	8	Unmodified	_EAGPDAVL_					0	0	0		nc|ENSG00000162813|O95861-3|BPNT1;nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	nc|ENSG00000162813|O95861-3|BPNT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3883103289	1	771.38831	770.381034	1.5231	0.0011749	-1.2701	-0.00097977	0.25292	0.0001951	771.3867657589068	21.248	0.19265	21.248	21.175	21.368	0	606	70	1.2585332	0.041380167	1.2585332	256.55536	0	8.435471						188	9	2	NaN	NaN	NaN	0.57691	1	4359	4359		26.732	0	1	20701			3011	4183	1738	1772	2368	2368					-0.01334141327663474
EAGPDFEL	8	Unmodified	_EAGPDFEL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.3937896373001	1	877.39379	876.386513	2.1492	0.0018857	-0.47483	-0.00041661	1.6744	0.0014691	877.3932780939809	25.901	0.24132	25.901	25.853	26.094	0	432	70	1.3625998	0.041151285	1.3625998	277.18097	0	8.371002						320	11	4	NaN	NaN	NaN	0.084194	1	5743	5743		68.108	21.068	1	50309			3012	1983	1739	1773	2369	2369					-0.056624625358494995
EAGPDFEL	8	Unmodified	_EAGPDFEL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.3937896373001	1	877.39379	876.386513	1.993	0.0017486	-0.096285	-8.448E-05	1.8967	0.0016642	877.3932418606356	25.901	0.19309	25.89	25.841	26.034	-0.0116	432	79	1.3625998	0.046521187	1.3610804	277.18097	0	9.463409						347	9	4	NaN	NaN	NaN	0.35353	1	5617	5617		38.918	8.1267	1	51763			3013	1983	1739	1773	2370	2370					-0.056624625358494995
EAGPGDCG	8	Unmodified	_EAGPGDCG_					0	0	0		ENST00000586342.1_1_19:892612-892729:-|nuORF	ENST00000586342.1_1_19:892612-892729:-|nuORF	ENST00000586342.1_1_19:892612-892729:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.2508305695001	1	705.250831	704.243554	0.84082	0.00059299	2.1504	0.0015165	2.9912	0.0021095	705.251717482979	26.601	0.16888	26.59	26.566	26.735	-0.010645	735	91	1.1809633	0.05422592	1.1794438	241.13774	0	11.072235						195	8	2	NaN	NaN	NaN	0.84887	1	3230	3230		0.32989	0	1	16894			3014	7700	1740	1774	2371	2371					-0.12039793198732696
EAGPGDPLL	9	Unmodified	_EAGPGDPLL_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4410741809	1	868.441074	867.433798	1.6429	0.0014268	-0.28756	-0.00024973	1.3554	0.001177	868.4408372935784	24.309	0.26541	24.309	24.261	24.526	0	444	124	1.3554435	0.07343483	1.3554435	275.76917	0	14.940521						444	12	2	NaN	NaN	NaN	0.043119	1	5632	5632		49.833	13.246	1	163120			3015	1535	1741	1775	2372	2372					-0.005221832648544478
EAGPGDPLL	9	Unmodified	_EAGPGDPLL_					0	0	0		ENSG00000105401|ENST00000222005|CDC37;ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4410741809	1	868.441074	867.433798	1.4392	0.0012499	-0.23556	-0.00020457	1.2036	0.0010453	868.4411978598151	24.309	0.24134	24.296	24.248	24.489	-0.012749	444	133	1.3554435	0.078820825	1.353924	275.76917	0	16.036316						599	11	4	NaN	NaN	NaN	0.025843	1	5488	5488		64.55	22.765	1	156280			3016	1535	1741	1775	2373	2373					-0.005221832648544478
EAGPSIVHR	9	Unmodified	_EAGPSIVHR_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.26179063805006	2	483.261791	964.509028	1.5855	0.00076622	-1.7988	-0.00086931	-0.21332	-0.00010309	483.26091788572654	12.868	0.31227	12.868	12.772	13.084	0	1320	85	0.824661	0.051729262	0.824661	335.02722	0	21.015564						541	14	4	NaN	NaN	NaN	0.0052656	1	7470	7470		102.05	54.911	1	267850			3017	3442	1742	1776	2374	2374					0.025354189862468957
EAGPSIVHR	9	Unmodified	_EAGPSIVHR_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.26179063805006	2	483.261791	964.509028	1.9319	0.00093363	-0.90189	-0.00043585	1.03	0.00049778	483.26173682955414	12.894	0.28769	12.885	12.765	13.052	-0.00947	1317	76	0.8265074	0.046179354	0.82498795	335.7773	0	18.760864						522	13	4	NaN	NaN	NaN	0.0012818	1	7319	7319		113.18	74.265	1	245950			3018	3442	1742	1776	2375	2375					0.025354189862468957
EAGPTGPQ	8	Unmodified	_EAGPTGPQ_					0	0	0		ENSG00000240654|ENST00000332018|C1QTNF9;ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000240654|ENST00000332018|C1QTNF9	ENSG00000240654|ENST00000332018|C1QTNF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3522591736	1	756.352259	755.344983	1.869	0.0014136	3.0315	0.0022929	4.9005	0.0037065	756.3543510011132	19.684	0.048023	19.684	19.684	19.732	0	597	37	1.2639319	0.021588564	1.2639319	257.7456	0	4.40242						54	3	2	NaN	NaN	NaN	0.80692	1	4159	4159		8.2903	2.8244	1	4295.5			3019	5935	1743	1777	2376	2376					-0.0424759850452574
EAHGPGEP	8	Unmodified	_EAHGPGEP_					0	0	0		ENST00000263094.10_1_19:1043339-1044595:+|nuORF	ENST00000263094.10_1_19:1043339-1044595:+|nuORF	ENST00000263094.10_1_19:1043339-1044595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.17739230665	2	397.177392	792.340232	0.89668	0.00035614	4.778	0.0018977	5.6746	0.0022538	397.17932522050944	30.366	0.19306	30.359	30.311	30.504	-0.0064106	1359	106	0.8006399	0.064798415	0.7991205	326.25974	0	26.405243						302	9	3	NaN	NaN	NaN	0.80692	1	4568	4568		8.2903	0	1	25169			3020	6314	1744	1778	2377	2377					-0.06424482647275909
EAHGPGEP	8	Unmodified						0	0	0		ENST00000263094.10_1_19:1043339-1044595:+|nuORF	ENST00000263094.10_1_19:1043339-1044595:+|nuORF	ENST00000263094.10_1_19:1043339-1044595:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	397.177392	792.340232	1.3793	0.00054784	5.209	0.0020689	6.5883	0.0026167	397.1795536979874	30.246	0.19303	30.246	30.198	30.391	0	1362	112	0.79879075	0.068501115	0.79879075	325.5062		27.914124	-0.05663	0.00022738	-0.00016487	NaN	8.2903	267	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34774			3021	6314	1744	1778							-0.06424482647275909
EAHPDLFSL	9	Unmodified	_EAHPDLFSL_					0	0	0		ENST00000467320.1_1_16:58550403-58550922:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6	ENST00000467320.1_1_16:58550403-58550922:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6	ENST00000467320.1_1_16:58550403-58550922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7560067684001	2	514.756007	1027.49746	2.3706	0.0012203	-2.2101	-0.0011377	0.16042	8.2577E-05	514.7548759833837	26.094	0.12068	26.094	26.046	26.167	0	1293	46	0.84127116	0.027671635	0.84127116	341.48065	0	11.232208						184	6	4	NaN	NaN	NaN	0.062072	1	9658	9658		41.785	16.823	1	20157			3022	7122;1407	1745	1779	2378	2378					-0.01518822827756594
EAHPDLFSL	9	Unmodified	_EAHPDLFSL_					0	0	0		ENST00000467320.1_1_16:58550403-58550922:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6	ENST00000467320.1_1_16:58550403-58550922:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6	ENST00000467320.1_1_16:58550403-58550922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7560067684001	2	514.756007	1027.49746	1.7786	0.00091553	-1.0561	-0.00054361	0.72251	0.00037191	514.7550675040669	26.094	0.19309	26.083	26.035	26.228	-0.011137	1296	49	0.8394264	0.029518008	0.83790696	340.7318	0	11.981659						161	9	2	NaN	NaN	NaN	0.062072	1	9468	9468		41.785	17.222	1	22912			3023	7122;1407	1745	1779	2379	2379					-0.01518822827756594
EAIAELDTL	9	Unmodified	_EAIAELDTL_					0	0	0		ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000166913|ENST00000353703|YWHAB;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5040683681999	1	974.504068	973.496792	1.7619	0.001717	-0.12751	-0.00012425	1.6344	0.0015928	974.5042047425476	26.988	0.19307	26.988	26.94	27.133	0	255	112	1.4678029	0.065799594	1.4678029	298.1208	0	13.364349						365	9	2	NaN	NaN	NaN	0.0094682	1	7702	7702		93.472	26.815	1	102170			3024	2862	1746	1780	2380	2380					0.008983377325193942
EAIAELDTL	9	Unmodified	_EAIAELDTL_					0	0	0		ENST00000399764.3_1_9:34922183-34922564:-|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000166913|ENST00000353703|YWHAB;YWHAZ|p.S207I|1|0.43|ENSG00000164924|chr8:100924013-100924013|C/A|missense_variant	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	ENST00000399764.3_1_9:34922183-34922564:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5040683681999	1	974.504068	973.496792	1.4822	0.0014444	0.044611	4.3474E-05	1.5268	0.0014879	974.5038951575129	27.011	0.21722	27.001	26.929	27.146	-0.010126	252	109	1.4695803	0.06402469	1.4680609	298.48178	0	13.003845						508	10	4	NaN	NaN	NaN	0.0040938	1	7553	7553		104.71	24.072	1	104090			3025	2862	1746	1780	2381	2381					0.008983377325193942
EAIDEYQIL	9	Unmodified	_EAIDEYQIL_					0	0	0		nc|ENSG00000186063|Q96BJ3-3|AIDA;ENSG00000186063|ENST00000340020|AIDA	nc|ENSG00000186063|Q96BJ3-3|AIDA	nc|ENSG00000186063|Q96BJ3-3|AIDA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1093.5411821559999	1	1093.54118	1092.53391	2.0482	0.0022398	-2.1037	-0.0023005	-0.055467	-6.0656E-05	1093.5394291806117	27.76	0.2172	27.76	27.712	27.929	0	129	88	1.5422925	0.051294446	1.5422925	312.77338	0	10.402405						273	10	4	NaN	NaN	NaN	0.024221	1	12502	12502		66.656	24.339	1	31273			3026	5451	1747	1781	2382	2382					-0.008659907217179352
EAIDEYQIL	9	Unmodified	_EAIDEYQIL_					0	0	0		nc|ENSG00000186063|Q96BJ3-3|AIDA;ENSG00000186063|ENST00000340020|AIDA	nc|ENSG00000186063|Q96BJ3-3|AIDA	nc|ENSG00000186063|Q96BJ3-3|AIDA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1093.5411821559999	1	1093.54118	1092.53391	1.1667	0.0012758	-2.6003	-0.0028436	-1.4336	-0.0015677	1093.5393096256735	27.783	0.19311	27.774	27.702	27.895	-0.009552	129	82	1.5422925	0.04775679	1.540773	312.77338	0	9.684967						285	9	3	NaN	NaN	NaN	0.055351	1	12188	12188		44.638	21.304	1	34409			3027	5451	1747	1781	2383	2383					-0.008659907217179352
EAIGIDFSL	9	Unmodified	_EAIGIDFSL_					0	0	0		nc|ENSG00000148143|Q96JM2-2|ZNF462;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.2263	0.0011827	-0.36753	-0.00035449	0.85875	0.00082826	964.4981597569416	31.983	0.21717	31.983	31.935	32.152	0	270	82	1.458913	0.0480057	1.458913	296.35812	0	9.751709						343	10	4	NaN	NaN	NaN	0.0012818	1	7435	7435		113.18	42.583	1	44082			3028	3616	1748	1782	2384	2384					0.008106589407248066
EAIGIDFSL	9	Unmodified	_EAIGIDFSL_					0	0	0		nc|ENSG00000148143|Q96JM2-2|ZNF462;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	nc|ENSG00000148143|Q96JM2-2|ZNF462	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	0.68936	0.00066489	0.48448	0.00046728	1.1738	0.0011322	964.4997666265108	31.982	0.21718	31.979	31.93	32.148	-0.0037594	267	76	1.4606913	0.044449806	1.4591719	296.71936	0	9.029358						266	10	3	NaN	NaN	NaN	0.12328	1	7286	7286		32.453	9.1183	1	40474			3029	3616	1748	1782	2385	2385					0.008106589407248066
EAIKQIEVL	9	Unmodified	_EAIKQIEVL_					0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.8107819931001	2	521.810782	1041.60701	1.6064	0.00083824	-2.017	-0.0010525	-0.41056	-0.00021424	521.8093273799443	22.38	0.048243	22.38	22.356	22.405	0	1257	82	0.86339295	0.049776614	0.86339295	350.39734	0	20.201233						120	3	3	NaN	NaN	NaN	0.04743	1	10298	10298		48.002	7.0453	1	21913			3030	2112	1749	1783	2386	2386					0.08787182791570558
EAIKQIEVL	9	Unmodified						0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.810782	1041.60701	1.2195	0.00063636	-1.3464	-0.00070255	-0.12686	-6.6196E-05	521.8100726103582	22.404	0.072147	22.39	22.342	22.414	-0.013733	1254	82	0.8652351	0.04977131	0.86371565	351.14496		20.199066	0.0048764	0.00037389	0.00016137	NaN	48.002	133	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21114			3031	2112	1749	1783							0.08787182791570558
EAIKRDPNL	9	Unmodified	_EAIKRDPNL_					0	0	0		ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2958304206501	2	528.29583	1054.57711	1.1324	0.00059822	-1.4593	-0.00077093	-0.32692	-0.00017271	528.2952586097812	13.206	0.095813	13.196	13.172	13.267	-0.010098	1251	34	0.8670771	0.020261824	0.8655577	351.83603	0	8.22171						71	5	2	NaN	NaN	NaN	0.10206	1	10623	10623		35.523	8.2267	1	6754.4			3032	5423	1750	1784	2387	2387					0.052002438462295686
EAINSDPEL	9	Unmodified	_EAINSDPEL_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.462931835	1	987.462932	986.455655	1.7709	0.0017487	1.6108	0.0015906	3.3817	0.0033393	987.4645574246931	20.453	0.072128	20.453	20.429	20.501	0	300	55	1.4411188	0.032039523	1.4411188	292.6474	0	6.506256						102	4	2	NaN	NaN	NaN	0.0050453	1	8095	8095		102.5	62.342	1	10075			3033	4405	1751	1785	2388	2388					-0.03811423306956385
EAINSDPEL	9	Unmodified	_EAINSDPEL_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.462931835	1	987.462932	986.455655	1.6643	0.0016435	-0.76902	-0.00075938	0.89531	0.00088408	987.4614794908739	20.453	0.096218	20.439	20.415	20.511	-0.014143	294	55	1.4446791	0.03204298	1.4431597	293.3704	0	6.5069275						123	5	3	NaN	NaN	NaN	0.00065562	1	7925	7925		115.07	70.431	1	10473			3034	4405	1751	1785	2389	2389					-0.03811423306956385
EAINVEQAF	9	Unmodified	_EAINVEQAF_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.75346407945	2	510.753464	1019.49238	1.8572	0.00094859	-2.2851	-0.0011671	-0.42783	-0.00021852	510.7523947287123	25.057	0.096516	25.057	25.033	25.129	0	1329	37	0.81912065	0.02216494	0.81912065	332.52405	0	8.997894						98	5	3	NaN	NaN	NaN	0.089764	1	9343	9343		37.302	15.467	1	11659			3035	844	1752	1786	2390	2390					-0.016591266903787982
EAITGDFAL	9	Unmodified	_EAITGDFAL_					0	0	0		ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4672889314	1	936.467289	935.460012	1.4913	0.0013966	1.7786	0.0016656	3.2699	0.0030622	936.4688195005557	27.952	0.14477	27.943	27.895	28.039	-0.009552	345	85	1.4143922	0.049902916	1.4128729	287.4357	0	10.141388						173	7	2	NaN	NaN	NaN	0.062072	1	6597	6597		41.785	21.229	1	12182			3036	948	1753	1787	2391	2391					-0.010299140933739181
EAITGDFAL	9	Unmodified						0	0	0		ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.467289	935.460012	1.6566	0.0015513	1.69	0.0015827	3.3466	0.003134	936.4695781238051	27.929	0.16892	27.929	27.833	28.001	0	351	70	1.4108255	0.04099822	1.4108255	286.71085		8.331726	-0.0069062	-4.4843E-05	-0.0010237	NaN	41.785	127	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9859.1			3037	948	1753	1787							-0.010299140933739181
EAIYNFEVL	9	Unmodified	_EAIYNFEVL_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;DSC3|p.F243L|1|0.25|ENSG00000134762|chr18:31024395-31024395|G/C|missense_variant	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5513529118	1	1097.55135	1096.54408	1.3312	0.0014611	5.0784	0.0055738	6.4096	0.0070349	1098.5618296277444	31.115	0.16889	31.115	31.091	31.259	0	90	130	1.5652816	0.076008916	1.5652816	317.421	0	15.413727						632	8	4	NaN	NaN	NaN	0.024221	1	12696	12696		66.656	19.175	1	141110			3038	2894	1754	1788	2392	2392					-0.0003338299648021348
EALAEERAQRL	11	Unmodified	_EALAEERAQRL_					0	0	0		SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.23348075549995	3	429.233481	1284.67861	0.9944	0.00042683	7.5822	0.0032545	8.5766	0.0036814	429.23677416025953	12.604	0.16808	12.604	12.58	12.748	0	1470	76	0.7320868	0.04641521	0.7320868	444.557	0	28.185486						328	8	5	NaN	NaN	NaN	0.12578	1	18518	18518		23.591	0	1	100440			3039	4917	1755	1789	2393	2393					0.04766070478126494
EALAELEEI	9	Unmodified	_EALAELEEI_					0	0	0			REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5146330545	1	1016.51463	1015.50736	2.4813	0.0025223	-1.3743	-0.001397	1.1071	0.0011254	1016.5132454802001	28.098	0.19307	28.098	28.05	28.243	0	225	85	1.4855686	0.04970193	1.4855686	301.55487	0	10.088959						291	9	3	NaN	NaN	NaN	0.011942	1	9193	9193		87.021	4.0606	1	40555	+		3040	13299	1756	1790	2394	2394					0.0002232038694955918
EALAELEEI	9	Unmodified						0	0	0			REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	REV__PRPF18|p.G173A|1|0.22|ENSG00000165630|chr10:13611622-13611622|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.51463	1015.50736	2.4813	0.0025223	-1.3743	-0.001397	1.1071	0.0011254	1016.5132454802001	28.098	0.19307	28.098	28.05	28.243	0	225	85	1.4855686	0.04970193	1.4855686	301.55487		10.088959	-0.0072022	-0.00054575	-0.00012805	NaN	87.021	291	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40555	+		3041	13299	1756	1790							0.0002232038694955918
EALAYFITV	9	Unmodified	_EALAYFITV_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5506246302998	1	1026.55062	1025.54335	1.6351	0.0016785	-1.0493	-0.0010772	0.58578	0.00060133	1027.5520692221523	32.756	0.096512	32.756	32.732	32.828	0	156	91	1.5263584	0.05311656	1.5263584	309.79413	0	10.780701						104	5	2	NaN	NaN	NaN	0.056143	1	9603	9603		44.302	12.741	1	17416			3042	2402	1757	1791	2395	2395					0.031598223544506254
EALSLSERS	9	Unmodified	_EALSLSERS_					0	0	0			REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5054653517001	1	991.505465	990.498189	1.8484	0.0018327	-6.752	-0.0066946	-4.9036	-0.004862	991.4978665162847	22.645	0.048233	22.631	22.607	22.655	-0.01354	234	79	1.4802408	0.046200752	1.4787214	300.575	0	9.381439						76	3	2	NaN	NaN	NaN	0.10363	1	8059	8059		35.296	14.848	1	6361.4	+		3043	12604	1758	1792	2396	2396					0.0025597182128649365
EAMADLHTL	9	Unmodified	_EAMADLHTL_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7420421133999	2	500.742042	999.469531	1.3674	0.00068473	-0.30424	-0.00015234	1.0632	0.00053239	500.74213495022946	20.79	0.096369	20.79	20.766	20.862	0	1245	40	0.87076044	0.023940682	0.87076044	353.58163	0	9.721344						97	5	3	NaN	NaN	NaN	0.36492	1	8561	8561		15.175	9.4812	1	7751.9			3044	5001	1759	1793	2397	2397					-0.030224690795193965
EAMADLHTL	9	Unmodified						0	0	0		nc|ENSG00000175793|P31947-2|SFN;SFN|p.M220Sfs*7|1|0.16|ENSG00000175793|chr1:26863869-26863872|CATG/-|frameshift_variant;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.742042	999.469531	1.0233	0.00051239	-1.0894	-0.00054553	-0.066185	-3.3142E-05	500.7415291103915	20.791	0.096251	20.776	20.752	20.849	-0.014086	1245	37	0.87076044	0.022097886	0.869241	353.58163		8.973053	-0.0068836	-0.00050883	-0.00075972	NaN	15.175	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6836.7			3045	5001	1759	1793							-0.030224690795193965
EAMLDEISL	9	Unmodified	_EAMLDEISL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.4917891224001	1	1020.49179	1019.48451	2.6945	0.0027497	-1.3199	-0.0013469	1.3746	0.0014028	1020.4937639932564	29.956	0.072393	29.956	29.932	30.004	0	204	76	1.4979934	0.044383764	1.4979934	304.06107	0	9.008972						119	4	2	NaN	NaN	NaN	0.074859	1	9341	9341		39.459	0	1	10990			3046	937	1760	1794	2398	2398					-0.02445022002166297
EAMLDEISL	9	Unmodified						0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1020.49179	1019.48451	1.4968	0.0015275	2.8619	0.0029205	4.3587	0.004448	1020.4937865390161	29.955	0.096502	29.949	29.925	30.021	-0.0064106	204	76	1.4979934	0.044378996	1.496474	304.06107		9.007996	-0.0036568	0.001984	-0.00075972	NaN	39.459	104	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10158			3047	937	1760	1794							-0.02445022002166297
EANAVFDIL	9	Unmodified	_EANAVFDIL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5094880971002	1	991.509488	990.502212	1.9042	0.001888	-0.50234	-0.00049808	1.4019	0.00139	991.5089942952211	32.273	0.14481	32.273	32.225	32.37	0	252	109	1.4695803	0.0639838	1.4695803	298.41025	0	12.992432						449	7	4	NaN	NaN	NaN	0.01966	1	8231	8231		72.428	19.649	1	115710			3048	5380	1761	1795	2399	2399					0.006580613150163117
EANAVFDIL	9	Unmodified	_EANAVFDIL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5094880971002	1	991.509488	990.502212	1.26	0.0012493	0.24451	0.00024244	1.5045	0.0014917	991.5096816569533	32.272	0.16894	32.268	32.196	32.365	-0.0037613	249	106	1.4713576	0.062223077	1.4698381	298.77115	0	12.634888						388	8	3	NaN	NaN	NaN	0.010878	1	8060	8060		90.252	37.472	1	108610			3049	5380	1761	1795	2400	2400					0.006580613150163117
EANEEGAVL	9	Unmodified	_EANEEGAVL_					0	0	0			REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF	REV__ENST00000427761.1_1_13:68406302-68406587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4367170845	1	931.436717	930.429441	1.5973	0.0014878	-0.29251	-0.00027246	1.3048	0.0012153	931.4364949665579	21.464	0.26492	21.45	21.378	21.643	-0.014006	360	82	1.405474	0.048184633	1.4039545	285.64572	0	9.792969						542	12	4	NaN	NaN	NaN	0.024221	1	6474	6474		66.656	11.243	1	96750	+		3050	12139	1762	1796	2401	2401					-0.03855692478430228
EAPAAGLFL	9	Unmodified	_EAPAAGLFL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4825450651	1	888.482545	887.475269	1.634	0.0014518	4.1275	0.0036672	5.7615	0.005119	888.4862176292127	36.808	0.16837	36.808	36.784	36.952	0	327	70	1.425088	0.0409894	1.425088	289.83636	0	8.336487						267	8	3	NaN	NaN	NaN	0.24994	1	5909	5909		22.126	1.5709	1	30935			3051	4270	1763	1797	2402	2402					0.027029974944639434
EAPGDAAA	8	Unmodified	_EAPGDAAA_					0	0	0			REV__ENSG00000176679|ENST00000321217|TGIF2LY	REV__ENSG00000176679|ENST00000321217|TGIF2LY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3100600078999	1	701.31006	700.302784	0.88447	0.00062029	-4.0837	-0.002864	-3.1993	-0.0022437	701.3076709945756	26.94	0.16892	26.94	26.915	27.084	0	1311	97	0.83019954	0.05902332	0.83019954	169.53444	0	12.053101						325	8	3	NaN	NaN	NaN	0.84887	1	3221	3221		0.32989	0	1	33587	+		3052	10077	1764	1798	2403	2403					-0.0593557391291597
EAPKGKSL	8	Unmodified	_EAPKGKSL_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.24253525239993	2	415.242535	828.470518	1.3592	0.00056441	-5.4732	-0.0022727	-4.114	-0.0017083	415.23999219782326	37.792	0.072235	37.795	37.771	37.843	0.0028229	1278	34	0.85049206	0.020281553	0.8489726	346.31757	0	8.258575						67	4	2	NaN	NaN	NaN	0.84887	1	5007	5007		0.32989	0	1	6112.9	+		3053	13083	1765	1799	2404	2404					0.04942113351694388
EAPKGKSL	8	Unmodified						0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	415.242535	828.470518	0.79925	0.00033188	-8.1352	-0.0033781	-7.336	-0.0030462	415.2392705328079	37.795	0.072166	37.795	37.771	37.843	0	1284	31	0.8468043	0.018440783	0.8468043	344.81595		7.5090027	-0.00012171	-0.0011816	-0.0010842	NaN	0.32989	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5283.7	+		3054	13083	1765	1799							0.04942113351694388
EAPKGKSL	8	Unmodified						0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	415.242535	828.470518	1.3592	0.00056441	-5.4732	-0.0022727	-4.114	-0.0017083	415.23999219782326	37.792	0.072235	37.795	37.771	37.843	0.0028229	1278	34	0.85049206	0.020281553	0.8489726	346.31757		8.258575	0.00012171	0.0010292	0.0010842	NaN	0.32989	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6112.9	+		3055	13083	1765	1799							0.04942113351694388
EAQLLPGE	8	Unmodified	_EAQLLPGE_					0	0	0		ENST00000540708.5_1_12:123465352-123465956:+|nuORF;ENST00000539576.5_1_12:123465267-123465956:+|nuORF;ENST00000392433.3_1_12:123465485-123465956:+|nuORF	ENST00000540708.5_1_12:123465352-123465956:+|nuORF	ENST00000540708.5_1_12:123465352-123465956:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4410741809	1	856.441074	855.433798	0.97978	0.00083913	4.9776	0.004263	5.9574	0.0051022	856.4449537350297	31.114	0.16892	31.109	31.084	31.253	-0.0050716	414	70	1.3733286	0.041116238	1.3718091	279.46912	0	8.367035						217	8	2	NaN	NaN	NaN	0.65075	1	5334	5334		22.126	0	1	46658			3056	6756	1766	1800	2405	2405					0.00029816735138865624
EAQLYRQF	8	Unmodified	_EAQLYRQF_					0	0	0		nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-3|GPR176	nc|ENSG00000166073|Q14439-3|GPR176	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7694484946501	2	527.769448	1053.52434	1.553	0.00081962	-3.5996	-0.0018997	-2.0466	-0.0010801	527.7663152321422	20.165	0.072054	20.165	20.117	20.189	0	1281	55	0.84864825	0.03318268	0.84864825	344.36258	0	13.464752						86	4	2	NaN	NaN	NaN	0.79607	1	10792	10792		9.746	1.4557	1	7146.5			3057	4447	1767	1801	2406	2406					-0.00027714216571439465
EAQPECSP	8	Unmodified	_EAQPECSP_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	860.3454592362	1	860.345459	859.338183	1.3029	0.0011209	1.2357	0.0010631	2.5386	0.0021841	860.3453818220344	40.414	0.072063	40.421	40.397	40.469	0.0067558	462	40	1.3447032	0.023276687	1.3431838	273.62427	0	4.7364197						75	4	2	NaN	NaN	NaN	0.82797	1	5389	5389		5.4659	0	1	5378.3			3058	6198	1768	1802	2407	2407					-0.09711279447401466
EASALGLIL	9	Unmodified	_EASALGLIL_					0	0	0		PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.5244098798001	1	886.52441	885.517133	1.7507	0.0015521	-0.083855	-7.4339E-05	1.6669	0.0014777	886.5244056967185	27.543	0.072433	27.543	27.495	27.567	0	348	121	1.412609	0.07141137	1.412609	287.30807	0	14.524231						199	4	3	NaN	NaN	NaN	0.043119	1	5885	5885		49.833	5.5305	1	35024			3059	2946	1769	1803	2408	2408					0.06979553183009557
EASALGLIL	9	Unmodified	_EASALGLIL_					0	0	0		PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547994.5_1_12:56718022-56726878:-|nuORF	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.5244098798001	1	886.52441	885.517133	1.275	0.0011303	-1.4947	-0.0013251	-0.21974	-0.0001948	886.5226498921992	27.566	0.19307	27.557	27.388	27.581	-0.009552	348	124	1.412609	0.07320058	1.4110895	287.30807	0	14.888123						305	9	3	NaN	NaN	NaN	0.043119	1	5759	5759		49.833	5.5305	1	43790			3060	2946	1769	1803	2409	2409					0.06979553183009557
EASDVEISL	9	Unmodified	_EASDVEISL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.73747966425	2	481.73748	961.460406	2.3444	0.0011294	-2.2548	-0.0010862	0.089545	4.3137E-05	481.7364900878176	25.057	0.072369	25.045	25.021	25.093	-0.012011	1362	31	0.79879075	0.018492699	0.7972713	324.53162	0	7.513214						64	4	2	NaN	NaN	NaN	0.49672	1	7215	7215		9.746	1.4557	1	6501.2			3061	3321	1770	1804	2410	2410					-0.021865391641881615
EASGLFIQL	9	Unmodified	_EASGLFIQL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.5302235392002	1	977.530224	976.522947	1.2564	0.0012281	0.97243	0.00095058	2.2288	0.0021787	977.5309823094566	31.766	0.16893	31.766	31.67	31.839	0	243	67	1.4749115	0.039084673	1.4749115	299.55164	0	7.938019						225	8	2	NaN	NaN	NaN	0.042816	1	7797	7797		49.961	5.3228	1	28552			3062	5153	1771	1805	2411	2411					0.03374651694673503
EASGLFIQL	9	Unmodified	_EASGLFIQL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5302235392002	1	977.530224	976.522947	0.91724	0.00089663	0.53272	0.00052075	1.45	0.0014174	977.5303807249603	31.765	0.16898	31.761	31.664	31.833	-0.0044155	240	70	1.4766881	0.040871978	1.4751687	299.91248	0	8.301025						233	8	3	NaN	NaN	NaN	0.054111	1	7641	7641		45.165	5.7062	1	27745			3063	5153	1771	1805	2412	2412					0.03374651694673503
EASMMEYVL	9	Unmodified	_EASMMEYVL_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.4689451903	1	1072.46895	1071.46167	2.008	0.0021535	0.46743	0.0005013	2.4754	0.0026548	1072.4699534271424	30.053	0.14485	30.053	30.029	30.173	0	144	67	1.533442	0.038960457	1.533442	311.0548	0	7.9030457						199	7	3	NaN	NaN	NaN	0.14301	1	11613	11613		29.598	10.48	1	19477			3064	6180	1772	1806	2413	2413					-0.07120364391289513
EASPVEPQL	9	Unmodified	_EASPVEPQL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.488752655	1	969.488753	968.481476	2.2093	0.0021419	-2.0797	-0.0020163	0.12954	0.00012559	969.4877708248521	21.705	0.19264	21.705	21.657	21.85	0	330	112	1.4233059	0.0659256	1.4233059	289.10403	0	13.3909						554	9	3	NaN	NaN	NaN	0.0021374	1	7562	7562		110.61	43.451	1	156430			3065	5886	1773	1807	2414	2414					-0.004025290646723079
EASPVEPQL	9	Unmodified	_EASPVEPQL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.488752655	1	969.488753	968.481476	1.6323	0.0015825	-2.1595	-0.0020936	-0.52716	-0.00051107	969.4876985840397	21.705	0.21665	21.691	21.643	21.86	-0.013897	330	118	1.4233059	0.06950402	1.4217864	289.10403	0	14.117767						559	10	3	NaN	NaN	NaN	0.006197	1	7415	7415		100.15	32.992	1	155820			3066	5886	1773	1807	2415	2415					-0.004025290646723079
EASSAIDVL	9	Unmodified	_EASSAIDVL_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4622035535	1	904.462204	903.454927	1.845	0.0016688	0.044387	4.0146E-05	1.8894	0.0017089	904.4612692264542	24.888	0.07239	24.888	24.864	24.936	0	366	37	1.4019053	0.021411896	1.4019053	285.04443	0	4.353607						55	4	2	NaN	NaN	NaN	0.29681	1	6144	6144		19.118	2.5342	1	4226			3067	2070	1774	1808	2416	2416					-0.0006621795599812685
EASSAIDVL	9	Unmodified	_EASSAIDVL_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4622035535	1	904.462204	903.454927	2.3274	0.002105	-2.4134	-0.0021829	-0.086054	-7.7833E-05	904.4594333086798	24.888	0.12064	24.875	24.851	24.972	-0.012394	369	37	1.4001206	0.021411896	1.3986012	284.68158	0	4.3536377						68	6	2	NaN	NaN	NaN	0.47587	1	6018	6018		10.605	0.85897	1	4417.9			3068	2070	1774	1808	2417	2417					-0.0006621795599812685
EASVDVSEL	9	Unmodified	_EASVDVSEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4520327977001	1	948.452033	947.444756	1.9849	0.0018826	2.4757	0.0023481	4.4606	0.0042306	948.4557013293656	22.742	0.2171	22.742	22.694	22.911	0	339	103	1.4179583	0.060570717	1.4179583	288.1075	0	12.307007						326	10	3	NaN	NaN	NaN	0.030669	1	7009	7009		58.235	2.7418	1	41558			3069	5421	1775	1809	2418	2418					-0.03106825681220471
EASVLYEDLL	10	Unmodified	_EASVLYEDLL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2951617186501	2	576.295162	1150.57577	1.9991	0.0011521	0.18323	0.00010559	2.1824	0.0012577	576.2957642596652	25.949	0.21721	25.938	25.89	26.107	-0.0116	1194	49	0.902037	0.029406548	0.9005176	365.6279	0	11.919556						158	10	3	NaN	NaN	NaN	0.64158	1	14328	14328		12.049	0.87837	1	18232			3070	2339	1776	1810	2419	2419					0.006505649668270053
EATLGVLAV	9	Unmodified	_EATLGVLAV_					0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5087598156	1	872.50876	871.501483	1.8227	0.0015904	-0.99313	-0.00086651	0.82961	0.00072384	872.5075340926297	25.178	0.07238	25.178	25.153	25.226	0	375	43	1.3965509	0.024996638	1.3965509	284.1119	0	5.085266						57	4	2	NaN	NaN	NaN	0.62619	1	5683	5683		4.4131	0	1	3587.8	+		3071	10409	1777	1811	2420	2420					0.060592666659431416
EATLGVLAV	9	Unmodified						0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.50876	871.501483	1.8227	0.0015904	-0.99313	-0.00086651	0.82961	0.00072384	872.5075340926297	25.178	0.07238	25.178	25.153	25.226	0	375	43	1.3965509	0.024996638	1.3965509	284.1119		5.085266	0.0061263	-0.0015497	0.0016523	NaN	4.4131	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3587.8	+		3072	10409	1777	1811							0.060592666659431416
EATLGVLAV	9	Unmodified						0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	872.50876	871.501483	1.9922	0.0017382	2.4276	0.0021181	4.4198	0.0038564	872.5110600343303	25.177	0.048286	25.165	25.165	25.214	-0.012011	378	37	1.3947657	0.021421194	1.3932463	283.74872		4.357849	-0.0061263	0.001435	-0.0016523	NaN	4.4131	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3670.8	+		3073	10409	1777	1811							0.060592666659431416
EATQDDYVL	9	Unmodified	_EATQDDYVL_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG	nc|ENSG00000106278|P23471-3|PTPRZ1;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.4734965213	1	1053.4735	1052.46622	2.3307	0.0024554	-1.4751	-0.001554	0.85559	0.00090134	1053.472539895235	22.742	0.096485	22.742	22.694	22.79	0	189	49	1.5068626	0.028373957	1.5068626	305.7334	0	5.756897						112	5	2	NaN	NaN	NaN	0.084037	1	10721	10721		38.131	10.342	1	12938			3074	1593;3490	1778	1812	2421	2421					-0.05791440652524216
EATQDDYVL	9	Unmodified						0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG	nc|ENSG00000106278|P23471-3|PTPRZ1;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1053.4735	1052.46622	1.5958	0.0016812	2.2202	0.0023389	3.816	0.0040201	1053.4759738561024	22.814	0.096415	22.8	22.704	22.8	-0.01354	186	52	1.5086359	0.030142546	1.5071164	306.09317		6.1157227	0.029083	0.0026879	0.00012692	NaN	38.131	143	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17250			3075	1593;3490	1778	1812							-0.05791440652524216
EATTQVAI	8	Unmodified	_EATTQVAI_					0	0	0			REV__HEG1|p.G878E|1|0.22|ENSG00000173706|chr3:125012946-125012946|C/T|missense_variant	REV__HEG1|p.G878E|1|0.22|ENSG00000173706|chr3:125012946-125012946|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4410741809	1	832.441074	831.433798	1.6734	0.001393	0.049173	4.0934E-05	1.7226	0.0014339	832.4409576187866	19.731	0.096292	19.717	19.717	19.813	-0.014141	471	43	1.3393306	0.02507925	1.3378111	272.67502	0	5.105896						80	5	2	NaN	NaN	NaN	0.63138	1	5036	5036		23.334	4.2161	1	5970	+		3076	13009	1779	1813	2422	2422					0.011338167351482298
EATYLYILGFA	11	Unmodified	_EATYLYILGFA_					0	0	0			REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.8291717115	2	630.829172	1259.64379	1.9439	0.0012263	-1.9404	-0.001224	0.0035481	2.2383E-06	630.828460234227	25.515	0.072376	25.515	25.491	25.564	0	1140	52	0.93509084	0.031178772	0.93509084	378.63687	0	12.624908						88	4	2	NaN	NaN	NaN	0.76304	1	17991	17991		3.2116	0	1	10326	+		3077	8353	1780	1814	2423	2423					0.024354346174504826
EATYLYILGFA	11	Unmodified						0	0	0			REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.829172	1259.64379	1.9439	0.0012263	-1.9404	-0.001224	0.0035481	2.2383E-06	630.828460234227	25.515	0.072376	25.515	25.491	25.564	0	1140	52	0.93509084	0.031178772	0.93509084	378.63687		12.624908	0	0	0	NaN	3.2116	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10326	+		3078	8353	1780	1814							0.024354346174504826
EAVAGVDVL	9	Unmodified	_EAVAGVDVL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.4723743092999	1	872.472374	871.465098	2.0026	0.0017472	-0.94781	-0.00082694	1.0548	0.00092027	872.471849520508	25.877	0.04826	25.877	25.877	25.926	0	417	49	1.3715409	0.02861011	1.3715409	279.0241	0	5.820404						69	3	2	NaN	NaN	NaN	0.074859	1	5679	5679		39.459	9.8604	1	7167.9			3079	989	1781	1815	2424	2424					0.02422389769219535
EAVAGVDVL	9	Unmodified	_EAVAGVDVL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4723743092999	1	872.472374	871.465098	2.0096	0.0017533	-1.6647	-0.0014524	0.34488	0.0003009	872.4703982487464	25.901	0.072418	25.89	25.841	25.914	-0.0116	423	55	1.3679651	0.032182932	1.3664457	278.29666	0	6.5472717						84	4	2	NaN	NaN	NaN	0.16171	1	5541	5541		27.789	14.786	1	7651.5			3080	989	1781	1815	2425	2425					0.02422389769219535
EAVALVEEL	9	Unmodified	_EAVALVEEL_					0	0	0		nc|ENSG00000186448|O14709-2|ZNF197;ENSG00000186448|ENST00000344387|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5248038102999	1	972.524804	971.517527	1.9425	0.0018892	-1.0639	-0.0010347	0.87865	0.0008545	972.5240723910721	28.388	0.072376	28.388	28.388	28.46	0	264	52	1.4624695	0.030222535	1.4624695	297.046	0	6.1385803						80	4	2	NaN	NaN	NaN	0.21199	1	7656	7656		24.562	5.4437	1	6297.9			3081	5469	1782	1816	2426	2426					0.030629281121719032
EAVALVEEL	9	Unmodified	_EAVALVEEL_					0	0	0		nc|ENSG00000186448|O14709-2|ZNF197;ENSG00000186448|ENST00000344387|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5248038102999	1	972.524804	971.517527	1.8039	0.0017544	2.8059	0.0027288	4.6098	0.0044831	972.5287447358506	29.522	0.14478	29.522	29.498	29.642	0	282	70	1.4517976	0.04091978	1.4517976	294.8784	0	8.31134						253	7	3	NaN	NaN	NaN	0.032764	1	7657	7657		55.494	8.3578	1	58124			3082	5469	1782	1816	2427	2427					0.030629281121719032
EAVALVEEL	9	Unmodified	_EAVALVEEL_					0	0	0		nc|ENSG00000186448|O14709-2|ZNF197;ENSG00000186448|ENST00000344387|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5248038102999	1	972.524804	971.517527	1.4255	0.0013863	0.56898	0.00055335	1.9945	0.0019397	972.5254923274058	28.411	0.072407	28.402	28.378	28.45	-0.0089798	261	52	1.4642475	0.030225873	1.462728	297.4071	0	6.1392517						82	4	2	NaN	NaN	NaN	0.089764	1	7509	7509		37.302	6.6922	1	6991.9			3083	5469	1782	1816	2428	2428					0.030629281121719032
EAVALVEEL	9	Unmodified	_EAVALVEEL_					0	0	0		nc|ENSG00000186448|O14709-2|ZNF197;ENSG00000186448|ENST00000344387|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	nc|ENSG00000186448|O14709-2|ZNF197	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5248038102999	1	972.524804	971.517527	1.2578	0.0012232	4.2974	0.0041793	5.5552	0.0054025	972.5295962978827	29.545	0.21715	29.538	29.466	29.683	-0.0070648	279	82	1.4535767	0.04804647	1.4520572	295.23972	0	9.75885						319	10	3	NaN	NaN	NaN	0.016254	1	7511	7511		76.739	12.189	1	65449			3084	5469	1782	1816	2429	2429					0.030629281121719032
EAVGEIMSL	9	Unmodified	_EAVGEIMSL_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4706597498001	1	948.47066	947.463383	1.1352	0.0010767	2.6852	0.0025468	3.8203	0.0036235	948.4723266523388	27.783	0.19311	27.774	27.702	27.895	-0.009552	315	94	1.4322147	0.055205584	1.4306953	291.00412	0	11.216919						267	9	2	NaN	NaN	NaN	0.036546	1	6882	6882		52.624	21.063	1	50508			3085	2630	1783	1817	2430	2430					-0.012449873110199405
EAVGEIMSL	9	Unmodified						0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.47066	947.463383	1.7837	0.0016918	3.4377	0.0032606	5.2215	0.0049524	948.472544212104	27.784	0.21717	27.784	27.639	27.857	0	318	85	1.4304334	0.049871087	1.4304334	290.64215		10.133026	0.005189	0.00040164	-0.00013098	NaN	52.624	349	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63478			3086	2630	1783	1817							-0.012449873110199405
EAVHGELVL	9	Unmodified	_EAVHGELVL_					0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.76637448945	2	483.766374	965.518196	1.689	0.00081707	-2.0334	-0.0009837	-0.34444	-0.00016663	483.7659162061019	21.103	0.09626	21.089	21.065	21.162	-0.014004	1305	37	0.83389086	0.022145689	0.8323714	338.77197	0	8.996796						79	5	2	NaN	NaN	NaN	0.29681	1	7355	7355		19.118	5.0767	1	8288			3087	7924	1784	1818	2431	2431					0.03405767551907957
EAVLIDPVL	9	Unmodified	_EAVLIDPVL_					0	0	0		ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5662746945001	1	968.566275	967.558998	1.1014	0.0010667	-0.36346	-0.00035204	0.73789	0.0007147	968.5658842379786	31.356	0.14481	31.356	31.308	31.452	0	240	100	1.4766881	0.058654904	1.4766881	299.95114	0	11.914246						365	7	4	NaN	NaN	NaN	1.096E-11	1	7546	7546		143.5	69.168	1	79238			3088	1565	1785	1819	2432	2432					0.07392108871522396
EAVLIDPVL	9	Unmodified	_EAVLIDPVL_					0	0	0		ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.5662746945001	1	968.566275	967.558998	0.89013	0.00086215	-0.17406	-0.00016859	0.71607	0.00069356	968.5661808842771	31.331	0.12061	31.326	31.302	31.422	-0.0050716	240	94	1.4766881	0.05508852	1.4751687	299.9511	0	11.189789						347	6	4	NaN	NaN	NaN	3.2142E-07	1	7402	7402		129.63	44.749	1	79890			3089	1565	1785	1819	2433	2433					0.07392108871522396
EAVSLQEH	8	Unmodified	_EAVSLQEH_					0	0	0			REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4421368134001	1	912.442137	911.43486	2.2149	0.002021	7.7355	0.0070582	9.9505	0.0090792	912.4504251881458	25.081	0.048243	25.069	25.045	25.093	-0.012011	369	52	1.4001206	0.030341625	1.3986012	284.64417	0	6.168457						72	3	2	NaN	NaN	NaN	0.78967	1	6127	6127		10.605	0	1	5152.1	+		3090	8617	1786	1820	2434	2434					-0.02439968895942002
EAVSLQEH	8	Unmodified						0	0	0			REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.442137	911.43486	1.887	0.0017218	7.1844	0.0065553	9.0714	0.0082771	912.4496234288091	25.057	0.048252	25.057	25.057	25.105	0	369	94	1.4001206	0.055382013	1.4001206	284.64417		11.259155	-0.0059627	-0.00023098	0.00075972	NaN	10.605	97	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6120.2	+		3091	8617	1786	1820							-0.02439968895942002
EAVSLQEH	8	Unmodified						0	0	0			REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	REV__ENST00000442868.1_1_1:202822165-202825009:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	912.442137	911.43486	2.2149	0.002021	7.7355	0.0070582	9.9505	0.0090792	912.4504251881458	25.081	0.048243	25.069	25.045	25.093	-0.012011	369	52	1.4001206	0.030341625	1.3986012	284.64417		6.168457	0.0059627	0.0002719	-0.00075972	NaN	10.605	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5152.1	+		3092	8617	1786	1820							-0.02439968895942002
EAVVEYVF	8	Unmodified	_EAVVEYVF_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.4771253362001	1	955.477125	954.469849	1.5564	0.0014871	0.64233	0.00061373	2.1987	0.0021008	955.4767545055059	28.894	0.19312	28.894	28.846	29.039	0	297	76	1.4428991	0.04450643	1.4428991	293.1442	0	9.042084						318	9	4	NaN	NaN	NaN	0.19946	1	7191	7191		50.033	19.241	1	70444			3093	5685	1787	1821	2435	2435					-0.009207260879975365
EAVVFEAVL	9	Unmodified	_EAVVFEAVL_					0	0	0		BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5349745661	1	976.534975	975.527698	1.4062	0.0013732	0.43638	0.00042614	1.8425	0.0017993	976.5352650595507	31.501	0.14482	31.501	31.452	31.597	0	255	163	1.4678029	0.09598613	1.4678029	298.11212	0	19.494873						589	7	4	NaN	NaN	NaN	0.016254	1	7769	7769		76.739	32.437	1	199600			3094	70	1788	1822	2436	2436					0.038955358374209936
EAVVFEAVL	9	Unmodified	_EAVVFEAVL_					0	0	0		BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant;ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	BTBD6|p.L436Wfs*14|1|0.34|ENSG00000184887|chr14:105250519-105250519|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5349745661	1	976.534975	975.527698	1.357	0.0013251	-0.12916	-0.00012613	1.2278	0.001199	976.535162156333	31.476	0.21725	31.471	31.423	31.64	-0.0044155	252	193	1.4695803	0.113761425	1.4680609	298.4731	0	23.105042						672	10	4	NaN	NaN	NaN	0.032764	1	7613	7613		55.494	13.709	1	195240			3095	70	1788	1822	2437	2437					0.038955358374209936
EAWLEDERSVL	11	Unmodified	_EAWLEDERSVL_					0	0	0		ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226	ENSG00000239887|ENST00000458626|C1orf226	ENSG00000239887|ENST00000458626|C1orf226	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.8329739982	2	673.832974	1345.6514	1.5877	0.0010699	-2.591	-0.0017459	-1.0033	-0.00067605	673.8308517364663	25.298	0.14478	25.298	25.25	25.395	0	1092	61	0.9644182	0.036623597	0.9644182	390.24133	0	14.819336						231	7	4	NaN	NaN	NaN	0.05951	1	19489	19489		47.424	33.475	1	30485			3096	6063	1789	1823	2438	2438					-0.007604578529026185
EAWLEDERSVL	11	Unmodified	_EAWLEDERSVL_					0	0	0		ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226	ENSG00000239887|ENST00000458626|C1orf226	ENSG00000239887|ENST00000458626|C1orf226	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.8329739982	2	673.832974	1345.6514	1.3771	0.00092792	-2.4428	-0.001646	-1.0657	-0.00071809	673.8313998802984	25.298	0.1447	25.286	25.238	25.382	-0.012011	1092	64	0.9644182	0.038469315	0.96289873	390.24133	0	15.566193						206	7	4	NaN	NaN	NaN	0.077819	1	18623	18623		42.779	7.256	1	27748			3097	6063	1789	1823	2439	2439					-0.007604578529026185
EAYAAFPG	8	Unmodified	_EAYAAFPG_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.1925110546	2	413.192511	824.370469	1.727	0.00071358	-1.2501	-0.00051655	0.47686	0.00019703	413.1920023233148	30.101	0.048321	30.101	30.053	30.101	0	1392	76	0.780288	0.046314597	0.780288	317.7564	0	18.860687						80	3	2	NaN	NaN	NaN	0.84692	1	5075	5075		1.4396	0	1	12054			3098	2407	1790	1824	2440	2440					-0.04874123982085621
EAYAELIVL	9	Unmodified	_EAYAELIVL_					0	0	0		nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-5|LSR	nc|ENSG00000105699|Q86X29-5|LSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5611893166	1	1020.56119	1019.55391	2.2685	0.0023151	4.4188	0.0045097	6.6873	0.0068248	1020.5620562964426	32.418	0.14478	32.418	32.394	32.539	0	135	94	1.5387528	0.054890037	1.5387528	312.33408	0	11.14151						215	7	2	NaN	NaN	NaN	0.043119	1	9354	9354		49.833	10.915	1	42438			3099	1560	1791	1825	2441	2441					0.04491805008899519
EAYAELIVL	9	Unmodified						0	0	0		nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-5|LSR	nc|ENSG00000105699|Q86X29-5|LSR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1020.56119	1019.55391	1.2328	0.0012581	4.2632	0.0043509	5.496	0.005609	1020.564318558682	32.417	0.14484	32.414	32.39	32.534	-0.0031052	129	91	1.5422925	0.053110957	1.540773	313.05255		10.7803955	-0.0021038	-7.8474E-05	0.0010101	NaN	49.833	259	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38090			3100	1560	1791	1825							0.04491805008899519
ECHCSCTEL	9	Unmodified	_ECHCSCTEL_					0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.68026998605	2	512.68027	1023.34599	2.4706	0.0012666	-2.7704	-0.0014203	-0.29982	-0.00015371	512.6795550317152	18.652	0.14389	18.652	18.604	18.748	0	1380	34	0.7876915	0.020354152	0.7876915	319.74924	0	8.26239						111	7	3	NaN	NaN	NaN	0.66529	1	9478	9478		2.1763	0	1	8189.4	+		3101	9312	1792	1826	2442	2442					-0.16475211513795784
ECHCSCTEL	9	Unmodified						0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.68027	1023.34599	2.4706	0.0012666	-2.7704	-0.0014203	-0.29982	-0.00015371	512.6795550317152	18.652	0.14389	18.652	18.604	18.748	0	1380	34	0.7876915	0.020354152	0.7876915	319.74924		8.26239	-0.0036393	0.00062797	0.00075972	NaN	2.1763	111	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8189.4	+		3102	9312	1792	1826							-0.16475211513795784
ECHCSCTEL	9	Unmodified						0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.68027	1023.34599	1.7557	0.00090012	-3.792	-0.0019441	-2.0363	-0.001044	513.1790106291257	18.674	0.16795	18.66	18.612	18.78	-0.014059	1380	49	0.7876915	0.029597998	0.78617203	319.74927		12.0147705	0.0036393	-0.0004196	-0.00075972	NaN	2.1763	124	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8154.6	+		3103	9312	1792	1826							-0.16475211513795784
ECIGHYIGPE	10	Unmodified	_ECIGHYIGPE_					0	0	0			REV__ENST00000573850.1_1_16:27761050-27765577:+|nuORF	REV__ENST00000573850.1_1_16:27761050-27765577:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2527739752001	2	559.252774	1116.491	1.3639	0.00076276	2.6895	0.0015041	4.0534	0.0022669	559.2561658834979	13.805	0.095816	13.794	13.794	13.89	-0.010673	1266	64	0.85786515	0.038698435	0.8563457	347.84915	0	15.691528						142	5	2	NaN	NaN	NaN	0.17937	1	13128	13128		37.302	10.006	1	13659	+		3104	12836	1793	1827	2443	2443					-0.06259084050793717
ECIQAEKPL	9	Unmodified	_ECIQAEKPL_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7655172097001	2	515.765517	1029.51648	0.53333	0.00027507	4.0141	0.0020703	4.5474	0.0023454	515.7675683712318	33.454	0.096535	33.452	33.428	33.525	-0.0018501	1281	64	0.84864825	0.038731933	0.8471288	344.46613	0	15.721283						159	4	3	NaN	NaN	NaN	0.58159	1	9560	9560		6.2502	0.15988	1	14798	+		3105	10803	1794	1828	2444	2444					0.0029039047165042575
ECIQAEKPL	9	Unmodified						0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.765517	1029.51648	1.1298	0.00058273	1.9291	0.00099499	3.059	0.0015777	515.7664005307533	33.456	0.16879	33.456	33.431	33.6	0	1281	70	0.84864825	0.042420685	0.84864825	344.46613		17.218536	0.0015965	-0.0010505	0.00075972	NaN	6.2502	191	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21227	+		3106	10803	1794	1828							0.0029039047165042575
ECIQAEKPL	9	Unmodified						0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.765517	1029.51648	0.53333	0.00027507	4.0141	0.0020703	4.5474	0.0023454	515.7675683712318	33.454	0.096535	33.452	33.428	33.525	-0.0018501	1281	64	0.84864825	0.038731933	0.8471288	344.46613		15.721283	-0.0015965	0.0011001	-0.00075972	NaN	6.2502	159	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14798	+		3107	10803	1794	1828							0.0029039047165042575
ECKTGYYFD	9	Unmodified	_ECKTGYYFD_					0	0	0		ENST00000476366.1_1_22:45937122-45946826:+|nuORF;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1	ENST00000476366.1_1_22:45937122-45946826:+|nuORF	ENST00000476366.1_1_22:45937122-45946826:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.4557379670998	1	1125.45574	1124.44846	1.8288	0.0020582	-2.6804	-0.0030167	-0.85163	-0.00095848	1125.454309010066	24.261	0.024105	24.261	24.237	24.261	0	75	52	1.5741152	0.030024648	1.5741152	319.11386	0	6.0867615						83	2	3	NaN	NaN	NaN	0.66822	1	13853	13853		1.9246	0	1	8025.9			3108	874	1795	1829	2445	2445					-0.10878479179041278
ECLGGALY	8	Unmodified	_ECLGGALY_					0	0	0		nc|ENSG00000214435|Q9HBK9-2|AS3MT;ENSG00000214435|ENST00000369880|AS3MT;ENST00000299353.6_1_10:104622682-104660454:+|nuORF	nc|ENSG00000214435|Q9HBK9-2|AS3MT	nc|ENSG00000214435|Q9HBK9-2|AS3MT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	825.3811164609999	1	825.381116	824.37384	1.2886	0.0010636	4.2264	0.0034884	5.515	0.004552	825.3851736557127	20.574	0.1205	20.559	20.535	20.656	-0.014086	519	46	1.310647	0.026909351	1.3091276	266.87247	0	5.479248						123	6	2	NaN	NaN	NaN	0.80071	1	4965	4965		9.1232	3.0329	1	10953			3109	5987	1796	1830	2446	2446					-0.045371971997496985
EDAAIWAID	9	Unmodified	_EDAAIWAID_					0	0	0			REV__ENST00000497956.1_1_1:26152795-26152903:+|nuORF	REV__ENST00000497956.1_1_1:26152795-26152903:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4731025907998	1	1003.4731	1002.46583	2.0052	0.0020122	3.2584	0.0032698	5.2636	0.0052819	1003.477966983119	23.32	0.12062	23.307	23.283	23.403	-0.013296	258	64	1.4660252	0.037333846	1.4645058	297.63962	0	7.579712						114	6	2	NaN	NaN	NaN	0.25448	1	8511	8511		21.835	0	1	13425	+		3110	9251	1797	1831	2447	2447					-0.03530815581734714
EDAETPQQQHG	11	Unmodified	_EDAETPQQQHG_					0	0	0		ENST00000319176.11_1_12:117178214-117178884:+|nuORF	ENST00000319176.11_1_12:117178214-117178884:+|nuORF	ENST00000319176.11_1_12:117178214-117178884:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.8460625148667	3	413.846063	1238.51636	1.4925	0.00061768	2.949	0.0012205	4.4416	0.0018381	413.8475027848103	18.962	0.072105	18.948	18.948	19.02	-0.014059	1425	34	0.7599118	0.020387232	0.75839233	461.63626	0	12.38501						92	4	3	NaN	NaN	NaN	0.74155	1	16746	16746		1.8502	0	1	8219.1			3111	6475	1798	1832	2448	2448					-0.09335937994660526
EDAGIIVLA	9	Unmodified	_EDAGIIVLA_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744377	1	900.503674	899.496398	1.66	0.0014948	-0.64896	-0.0005844	1.011	0.00091045	900.503215215791	29.666	0.072386	29.659	29.61	29.683	-0.0070648	339	46	1.4179583	0.02674079	1.4164388	288.32748	0	5.4374695						63	4	2	NaN	NaN	NaN	0.20577	1	5945	5945		24.961	5.8427	1	5468.2			3112	3289	1799	1833	2449	2449					0.042629628033296285
EDAIADHPA	9	Unmodified	_EDAIADHPA_					0	0	0		nc|ENSG00000154930|Q9NUB1-3|ACSS1;nc|ENSG00000154930|Q9NUB1-2|ACSS1;ENSG00000154930|ENST00000323482|ACSS1	nc|ENSG00000154930|Q9NUB1-3|ACSS1	nc|ENSG00000154930|Q9NUB1-3|ACSS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4214013713	1	938.421401	937.414125	1.5679	0.0014713	3.0601	0.0028717	4.628	0.0043431	938.4242054383751	28.145	0.12073	28.137	28.112	28.233	-0.0089798	348	91	1.412609	0.053524256	1.4110895	287.0646	0	10.876984						184	6	2	NaN	NaN	NaN	0.36492	1	6619	6619		15.175	1.1338	1	22326			3113	3861	1800	1834	2450	2450					-0.05708559275615244
EDASAYLTL	9	Unmodified	_EDASAYLTL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;nc|ENSG00000134516|Q92608-2|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4727682398001	1	982.472768	981.465492	2.0237	0.0019883	1.4368	0.0014116	3.4605	0.0033998	982.4745448134316	22.091	0.16887	22.091	22.091	22.26	0	240	55	1.4766881	0.03197491	1.4766881	299.89145	0	6.4935913						184	8	3	NaN	NaN	NaN	0.032764	1	7932	7932		55.494	21.055	1	22273			3114	2879	1801	1835	2451	2451					-0.025982353015592707
EDASPKGPL	9	Unmodified	_EDASPKGPL_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.4625379045002	1	913.462538	912.455261	1.9033	0.0017386	3.5726	0.0032634	5.4759	0.005002	913.4654585250508	30.173	0.096533	30.173	30.173	30.27	0	300	61	1.4411188	0.0356071	1.4411188	292.9742	0	7.2387695						118	5	3	NaN	NaN	NaN	0.47587	1	6278	6278		10.605	1.4818	1	13505	+		3115	11053	1802	1836	2452	2452					-0.004467982361234135
EDCTHSKERSQ	11	Unmodified	_EDCTHSKERSQ_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.2858650176	2	660.285865	1318.55718	0.91636	0.00060506	8.2639	0.0054566	9.1803	0.0060616	660.2915988977234	31.524	0.31373	31.519	31.399	31.712	-0.0044174	1128	61	0.9424274	0.036671042	0.94090796	381.4226	0	14.841644						525	14	3	NaN	NaN	NaN	0.7072	1	18239	18239		6.9844	0.55443	1	64661	+		3116	11380	1803	1837	2453	2453					-0.08935919946702597
EDDDDPLI	8	Unmodified	_EDDDDPLI_					0	0	0		ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.3890981899	1	931.389098	930.381822	1.5568	0.00145	0.099278	9.2466E-05	1.6561	0.0015424	931.3884194611337	20.622	0.21685	20.622	20.549	20.766	0	333	46	1.4215236	0.026735067	1.4215236	288.9078	0	5.4335938						178	10	2	NaN	NaN	NaN	0.30832	1	6611	6611		41.46	0	1	17007			3117	294	1804	1838	2454	2454					-0.08615391469277256
EDDPEYKKF	9	Unmodified	_EDDPEYKKF_					0	0	0		ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	ENSG00000169062|ENST00000375299|UPF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.8486328948	3	390.848633	1169.52407	1.4382	0.00056213	-9.8249	-0.0038401	-8.3867	-0.0032779	390.84500386442954	40.246	0.072071	40.252	40.228	40.3	0.0060463	1467	37	0.7339432	0.022275686	0.7324238	446.15012	0	13.540955						62	4	2	NaN	NaN	NaN	0.66196	1	14925	14925		1.1768	0.4607	1	4997.3			3118	4655	1805	1839	2455	2455					-0.05391178727086299
EDECEPIEAI	10	Unmodified	_EDECEPIEAI_					0	0	0		nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1	nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2448115573501	2	574.244812	1146.47507	1.5208	0.00087332	-5.9422	-0.0034123	-4.4213	-0.0025389	574.2422439598915	17.306	0.12001	17.292	17.268	17.388	-0.013569	1212	58	0.8910048	0.034959912	0.88948536	361.17148	0	14.171112						158	6	3	NaN	NaN	NaN	0.73444	1	14183	14183		5.6942	0	1	14763			3119	5665	1806	1840	2456	2456					-0.092308350783469
EDECGDVLVM	10	Unmodified	_EDECGDVLVM_					0	0	0		ENSG00000159307|ENST00000360835|SCUBE1;ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000159307|ENST00000360835|SCUBE1;ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2281072481501	2	555.228107	1108.44166	2.2507	0.0012496	-5.0718	-0.002816	-2.8211	-0.0015664	555.224937811601	15.724	0.047893	15.711	15.687	15.735	-0.012611	1257	34	0.86339295	0.020266235	0.8618735	350.12158	0	8.218323						48	3	2	NaN	NaN	NaN	0.72631	1	12828	12828		6.2502	0	1	4965.2			3120	4019;3552	1807	1841	2457	2457					-0.10822160121892921
EDEGDDQTRL	10	Unmodified	_EDEGDDQTRL_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.25201381275	2	589.252014	1176.48947	1.5526	0.00091487	5.1735	0.0030485	6.7261	0.0039634	589.2556394423773	20.164	0.33693	20.15	20.03	20.367	-0.014143	1221	79	0.885486	0.047827005	0.88396657	358.8255	0	19.38095						538	15	6	NaN	NaN	NaN	0.75466	1	15113	15113		4.3102	0.74037	1	167010	+		3121	9892	1808	1842	2458	2458					-0.0917104660586574
EDEWQSTSL	9	Unmodified	_EDEWQSTSL_					0	0	0			REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7354682915501	2	547.735468	1093.45638	2.3071	0.0012637	1.6684	0.00091384	3.9755	0.0021775	547.7365685705327	18.388	0.43177	18.388	18.268	18.7	0	1287	55	0.8449601	0.033196986	0.8449601	342.70438	0	13.464264						606	19	4	NaN	NaN	NaN	0.27608	1	12519	12519		20.449	1.1639	1	165340	+		3122	8634	1809	1843	2459	2459					-0.08660628657889902
EDEWQSTSL	9	Unmodified						0	0	0			REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.735468	1093.45638	2.3071	0.0012637	1.6684	0.00091384	3.9755	0.0021775	547.7365685705327	18.388	0.43177	18.388	18.268	18.7	0	1287	55	0.8449601	0.033196986	0.8449601	342.70438		13.464264	0.020437	-6.3348E-05	0.00075972	NaN	20.449	606	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165340	+		3123	8634	1809	1843							-0.08660628657889902
EDFDLIIDNC	10	Unmodified	_EDFDLIIDNC_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7606287970501	2	598.760629	1195.5067	1.3602	0.00081445	-8.8128	-0.0052768	-7.4526	-0.0044623	598.7546543063459	19.276	0.12004	19.276	19.228	19.348	0	1212	37	0.8910048	0.0220716	0.8910048	360.9954	0	8.942444						77	6	2	NaN	NaN	NaN	0.74854	1	16319	16319		4.7291	1.5175	1	5408.1			3124	1245	1810	1844	2460	2460					-0.08322842324378144
EDFGSLDP	8	Unmodified	_EDFGSLDP_					0	0	0			REV__ENSG00000137177|ENST00000259711|KIF13A	REV__ENSG00000137177|ENST00000259711|KIF13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.3730541951999	1	879.373054	878.365778	1.0367	0.00091165	-0.92544	-0.00081381	0.11126	9.7842E-05	879.3726477053272	31.646	0.12069	31.646	31.597	31.718	0	420	43	1.3697531	0.025028586	1.3697531	278.62637	0	5.091156						77	6	2	NaN	NaN	NaN	0.80692	1	5773	5773		8.2903	2.8244	1	5259.5	+		3125	9677	1811	1845	2461	2461					-0.07827052915536115
EDFNVEIRQF	10	Unmodified	_EDFNVEIRQF_					0	0	0		ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENST00000485768.1_1_5:66437998-66438421:+|nuORF	ENSG00000069020|ENST00000403625|MAST4	ENSG00000069020|ENST00000403625|MAST4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8145842798	2	648.814584	1295.61462	1.5518	0.0010068	3.8975	0.0025288	5.4493	0.0035356	648.8168917417593	24.936	0.096512	24.924	24.924	25.02	-0.012392	1140	67	0.93509084	0.0403468	0.9335714	378.52283	0	16.332336						107	5	2	NaN	NaN	NaN	0.70677	1	17863	17863		7.5876	3.1745	1	10586			3126	740	1812	1846	2462	2462					-0.021367096788253548
EDFYSRLLQL	10	Unmodified	_EDFYSRLLQL_					0	0	0		ENST00000535141.6_1_15:66797640-66806344:+|nuORF	ENST00000535141.6_1_15:66797640-66806344:+|nuORF	ENST00000535141.6_1_15:66797640-66806344:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3351525464001	2	642.335153	1282.65575	2.6801	0.0017215	1.6061	0.0010316	4.2862	0.0027532	642.3368484497782	28.242	0.45853	28.233	28.016	28.474	-0.0089779	1170	187	0.91673553	0.11370498	0.9152161	371.1322	0	46.03244						1904	20	6	NaN	NaN	NaN	0.026555	1	17652	17652		60.982	2.5838	1	1548000			3127	7465	1813	1847	2463	2463					0.02573051360673162
EDFYSRLLQL	10	Unmodified						0	0	0		ENST00000535141.6_1_15:66797640-66806344:+|nuORF	ENST00000535141.6_1_15:66797640-66806344:+|nuORF	ENST00000535141.6_1_15:66797640-66806344:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	642.335153	1282.65575	2.7669	0.0017773	2.1064	0.001353	4.8733	0.0031303	642.3374532300766	28.243	0.43438	28.243	28.05	28.484	0	1170	163	0.91673553	0.099044025	0.91673553	371.1322		40.097076	0.0048299	0.00030712	0.00075972	NaN	60.982	1858	19	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1588800			3128	7465	1813	1847							0.02573051360673162
EDGADPNP	8	Unmodified	_EDGADPNP_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.3213529756999	1	814.321353	813.314077	2.4296	0.0019785	3.7723	0.0030719	6.202	0.0050504	814.3235796038235	25.95	0.14479	25.95	25.926	26.07	0	522	46	1.3088527	0.026920795	1.3088527	266.5665	0	5.4828186						112	7	2	NaN	NaN	NaN	0.82332	1	4926	4926		6.0903	0.62448	1	7900			3129	408	1814	1848	2464	2464					-0.10004796609428013
EDGADPNP	8	Unmodified						0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	814.321353	813.314077	2.5844	0.0021045	3.5597	0.0028988	6.1442	0.0050033	814.325363716627	25.949	0.096537	25.938	25.914	26.01	-0.0116	522	43	1.3088527	0.025124788	1.3073332	266.5665		5.117035	-0.0059092	-9.6144E-05	-0.00075972	NaN	6.0903	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6896.2			3130	408	1814	1848							-0.10004796609428013
EDGERPFTI	9	Unmodified	_EDGERPFTI_					0	0	0			REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2563709091501	2	532.256371	1062.49819	1.8701	0.00099536	3.4747	0.0018494	5.3448	0.0028448	532.2577984357381	21.585	0.048206	21.585	21.585	21.633	0	1248	40	0.8689189	0.023945808	0.8689189	352.54947	0	9.715607						61	3	2	NaN	NaN	NaN	0.35794	1	11216	11216		15.463	0	1	4840.6	+		3131	10245	1815	1849	2465	2465					-0.030560281787074928
EDGERPFTI	9	Unmodified						0	0	0			REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.256371	1062.49819	1.8701	0.00099536	3.4747	0.0018494	5.3448	0.0028448	532.2577984357381	21.585	0.048206	21.585	21.585	21.633	0	1248	40	0.8689189	0.023945808	0.8689189	352.54947		9.715607	0	0	0	NaN	15.463	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4840.6	+		3132	10245	1815	1849							-0.030560281787074928
EDGFEAEL	8	Unmodified	_EDGFEAEL_					0	0	0		nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENSG00000167393|ENST00000390665|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.3836188815	1	909.383619	908.376342	1.9646	0.0017866	-1.3132	-0.0011942	0.65139	0.00059237	909.3825082028058	25.105	0.16888	25.105	25.081	25.25	0	441	46	1.3572328	0.026837707	1.3572328	275.93893	0	5.4563904						154	8	3	NaN	NaN	NaN	0.30832	1	6202	6202		41.46	17.61	1	13395			3133	4544	1816	1850	2466	2466					-0.08151070261089899
EDGPEPVL	8	Unmodified	_EDGPEPVL_					0	0	0		ENST00000402881.5_1_22:39907918-39908444:+|nuORF	ENST00000402881.5_1_22:39907918-39908444:+|nuORF	ENST00000402881.5_1_22:39907918-39908444:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4094397015	1	855.40944	854.402163	1.0772	0.00092141	-1.2965	-0.001109	-0.21932	-0.0001876	855.4081254560472	27.783	0.096535	27.774	27.75	27.846	-0.009552	462	76	1.3447032	0.044782043	1.3431838	273.64917	0	9.11322						116	5	2	NaN	NaN	NaN	0.82797	1	5315	5315		5.4659	2.3125	1	8108			3134	6836	1817	1851	2467	2467					-0.03086176018803144
EDGVDQAVF	9	Unmodified	_EDGVDQAVF_					0	0	0		ENST00000368655.4_1_1:153781139-153781250:-|nuORF	ENST00000368655.4_1_1:153781139-153781250:-|nuORF	ENST00000368655.4_1_1:153781139-153781250:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.4367170845001	1	979.436717	978.429441	1.6274	0.0015939	-0.87398	-0.00085601	0.75343	0.00073793	979.4349603577602	29.112	0.072386	29.112	29.063	29.136	0	303	100	1.4393384	0.058773518	1.4393384	292.3189	0	11.936462						166	4	2	NaN	NaN	NaN	0.49999	1	7834	7834		9.6116	0.64966	1	12635			3135	6633	1818	1852	2468	2468					-0.060636924784148505
EDHIYQEL	8	Unmodified	_EDHIYQEL_					0	0	0		ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7430963584001	2	523.743096	1045.47164	1.1915	0.00062406	-0.93175	-0.000488	0.2598	0.00013607	523.7423437852475	21.079	0.12043	21.079	21.031	21.151	0	1284	49	0.8468043	0.029505253	0.8468043	343.64847	0	11.973755						171	6	3	NaN	NaN	NaN	0.67593	1	10427	10427		20.555	5.3801	1	22323			3136	5867	1819	1853	2469	2469					-0.049277170700406714
EDHRTGQP	8	Unmodified	_EDHRTGQP_					0	0	0			REV__ENST00000486584.1_3_22:31795641-31795689:+|nuORF	REV__ENST00000486584.1_3_22:31795641-31795689:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4278837327001	1	939.427884	938.420607	1.2414	0.0011662	0.85837	0.00080637	2.0998	0.0019726	939.4288280350731	24.237	0.096498	24.237	24.237	24.333	0	333	112	1.4215236	0.06600273	1.4215236	288.8717	0	13.412598						205	5	2	NaN	NaN	NaN	0.67765	1	6775	6775		20.449	2.6497	1	42189	+		3137	12427	1820	1854	2470	2470					-0.051066213242279446
EDILVDSII	9	Unmodified	_EDILVDSII_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5510185608001	1	1016.55102	1015.54374	1.611	0.0016377	-1.1867	-0.0012064	0.42432	0.00043134	1016.5493049481979	37.434	0.21667	37.434	37.362	37.578	0	177	76	1.5139546	0.044299126	1.5139546	307.31677	0	8.992249						243	10	2	NaN	NaN	NaN	0.043119	1	9207	9207		49.833	5.1944	1	37129	+		3138	8756	1821	1855	2471	2471					0.03659197283673166
EDILVDSII	9	Unmodified						0	0	0			REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-4|TDRD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.55102	1015.54374	1.611	0.0016377	-1.1867	-0.0012064	0.42432	0.00043134	1016.5493049481979	37.434	0.21667	37.434	37.362	37.578	0	177	76	1.5139546	0.044299126	1.5139546	307.31677		8.992249	-0.00016647	-0.00069583	-0.0010127	NaN	49.833	243	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37129	+		3139	8756	1821	1855							0.03659197283673166
EDISFNDVTF	10	Unmodified	_EDISFNDVTF_					0	0	0		tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	tr|U7SUJ0|U7SUJ0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01184PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.76676841995	2	593.766768	1185.51898	0.98011	0.00058196	-2.6457	-0.0015709	-1.6656	-0.00098898	593.764958096876	29.183	0.33784	29.175	28.934	29.272	-0.0077209	1194	91	0.902037	0.055155218	0.9005176	365.50024	0	22.348541						571	11	4	NaN	NaN	NaN	0.63397	1	15406	15406		12.57	1.9647	1	137670			3140	13888	1822	1856	2472	2472					-0.06635482589717867
EDIYRFLKDNG	11	Unmodified	_EDIYRFLKDNG_					0	0	0		nc|ENSG00000124256|Q9H171-6|ZBP1;nc|ENSG00000124256|Q9H171-7|ZBP1;nc|ENSG00000124256|Q9H171-3|ZBP1;nc|ENSG00000124256|Q9H171-4|ZBP1;ENSG00000124256|ENST00000371173|ZBP1;nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-6|ZBP1	nc|ENSG00000124256|Q9H171-6|ZBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.22973629273326	3	457.229736	1368.66738	1.2443	0.00056894	-1.2537	-0.00057323	-0.0093906	-4.2937E-06	457.2293053366628	17.021	0.096039	17.021	16.997	17.093	0	1440	31	0.7506418	0.018546999	0.7506418	455.5273	0	11.2552185						68	5	2	NaN	NaN	NaN	0.72342	1	19786	19786		6.3563	1.0717	1	6948			3141	2408	1823	1857	2473	2473					-0.0022075161600696447
EDIYRFLKDNG	11	Unmodified						0	0	0		nc|ENSG00000124256|Q9H171-6|ZBP1;nc|ENSG00000124256|Q9H171-7|ZBP1;nc|ENSG00000124256|Q9H171-3|ZBP1;nc|ENSG00000124256|Q9H171-4|ZBP1;ENSG00000124256|ENST00000371173|ZBP1;nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-6|ZBP1	nc|ENSG00000124256|Q9H171-6|ZBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	457.229736	1368.66738	1.8008	0.00082337	-0.27847	-0.00012733	1.5223	0.00069605	457.2297451395784	17.114	0.048061	17.1	17.076	17.124	-0.013569	1440	31	0.7506418	0.018544972	0.7491224	455.52728		11.253998	0.039552	0.00070035	-0.00075972	NaN	6.3563	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5075			3142	2408	1823	1857							-0.0022075161600696447
EDKDEGNYSC	10	Unmodified	_EDKDEGNYSC_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;IGSF1|p.R751H|1|0.32|ENSG00000147255|chrX:131277924-131277924|C/T|missense_variant	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.1451206523333	3	387.145121	1158.41353	1.1282	0.00043677	-3.7867	-0.001466	-2.6585	-0.0010292	387.14373067566845	33.021	0.048294	33.021	32.973	33.021	0	1503	25	0.711653	0.0148714185	0.711653	432.6486	0	9.041046						35	3	2	NaN	NaN	NaN	0.77101	1	15080	15080		2.7042	0.10474	1	2457.9			3143	3592	1824	1858	2474	2474					-0.15933766777629899
EDKDKDETE	9	Unmodified	_EDKDKDETE_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7356652568	2	554.735665	1107.45678	1.653	0.00091695	-2.1127	-0.001172	-0.45979	-0.00025506	554.7350582678237	19.442	0.096165	19.428	19.38	19.476	-0.014141	1290	40	0.84311575	0.0239743	0.8415963	341.90253	0	9.722107						82	5	2	NaN	NaN	NaN	0.25448	1	12780	12780		21.835	0	1	7487.6			3144	886	1825	1859	2475	2475					-0.092652537287222
EDKDKDETE	9	Unmodified						0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.735665	1107.45678	1.3389	0.00074274	-2.6758	-0.0014844	-1.3369	-0.00074163	554.73328975939	19.42	0.072025	19.42	19.396	19.468	0	1287	46	0.8449601	0.027656734	0.8449601	342.65048		11.215424	-0.0040479	-0.00031742	0.0016819	NaN	21.835	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6724.3			3145	886	1825	1859							-0.092652537287222
EDKGSRRKF	9	Unmodified	_EDKGSRRKF_					0	0	0		ENST00000484572.1_1_6:45870949-45882153:-|nuORF;nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5;nc|ENSG00000112782|Q9NZA1|CLIC5	ENST00000484572.1_1_6:45870949-45882153:-|nuORF	ENST00000484572.1_1_6:45870949-45882153:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.87199478519994	3	374.871995	1121.59415	1.5067	0.00056482	0.95154	0.00035671	2.4582	0.00092152	374.8718078797725	15.246	0.096044	15.246	15.246	15.342	0	1455	34	0.7413668	0.020409405	0.7413668	450.88675	0	12.412659						63	5	2	NaN	NaN	NaN	0.56671	1	13759	13759		3.9281	0	1	7815.1			3146	1889	1826	1860	2476	2476					0.038221644520263
EDLGGPCP	8	Unmodified	_EDLGGPCP_					0	0	0		ENSG00000205899|ENST00000391429|BHLHA9	ENSG00000205899|ENST00000391429|BHLHA9	ENSG00000205899|ENST00000391429|BHLHA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.3290808905	1	787.329081	786.321804	1.7898	0.0014091	6.1173	0.0048163	7.9071	0.0062255	787.334123075672	30.293	0.09651	30.287	30.238	30.335	-0.0064106	519	34	1.310647	0.019739866	1.3091276	267.08408	0	4.022583						64	5	2	NaN	NaN	NaN	0.79379	1	4492	4492		10.052	0.92837	1	3925.2			3147	5936	1827	1861	2477	2477					-0.07990360613507619
EDLIAYLK	8	Unmodified	_EDLIAYLK_					0	0	0		CON__P62894	CON__P62894	CON__P62894	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.77112551635	2	482.771126	963.527698	1.6678	0.00080516	-1.4171	-0.00068411	0.25074	0.00012105	482.77071355269993	24.864	0.096518	24.864	24.84	24.936	0	1290	52	0.84311575	0.031361163	0.84311575	342.52954	0	12.740997						169	5	3	NaN	NaN	NaN	0.13059	1	7445	7445		58.235	18.082	1	23648		+	3148	202	1828	1862	2478	2478					0.044475358374370444
EDLIAYLK	8	Unmodified	_EDLIAYLK_					0	0	0		CON__P62894	CON__P62894	CON__P62894	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.77112551635	2	482.771126	963.527698	1.8263	0.0008817	-1.0227	-0.00049373	0.80362	0.00038797	482.7707571162166	24.864	0.14475	24.851	24.827	24.972	-0.012392	1290	58	0.84311575	0.035054564	0.8415963	342.52954	0	14.241486						171	7	3	NaN	NaN	NaN	0.528	1	7293	7293		29.598	4.6373	1	22385		+	3149	202	1828	1862	2479	2479					0.044475358374370444
EDLKKFGLY	9	Unmodified	_EDLKKFGLY_					0	0	0		tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	371.53773012953343	3	371.53773	1111.59136	1.2398	0.00046062	-1.2884	-0.00047871	-0.048672	-1.8083E-05	371.5371049237851	21.055	0.14445	21.041	20.993	21.138	-0.014086	1428	37	0.7580582	0.022244275	0.75653875	461.08844	0	13.53006						128	7	2	NaN	NaN	NaN	0.074859	1	12972	12972		34.454	19.6	1	21010			3150	13867	1829	1863	2480	2480					0.04002896274550949
EDLKKFGLY	9	Unmodified						0	0	0		tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	tr|U7STW0|U7STW0_FUSNUHydroxylaminereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hcpPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	371.53773	1111.59136	1.3359	0.00049635	-1.4362	-0.00053362	-0.10029	-3.7262E-05	371.53711321798676	20.983	0.14436	20.983	20.959	21.103	0	1428	43	0.7580582	0.025951624	0.7580582	461.08844		15.785095	-0.029162	-8.1963E-05	0.00075972	NaN	34.454	175	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21643			3151	13867	1829	1863							0.04002896274550949
EDLLDDFDLC	10	Unmodified	_EDLLDDFDLC_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.25263658945	2	599.252637	1196.49072	0.96264	0.00057686	0.51325	0.00030757	1.4759	0.00088443	599.2528320133404	21.874	0.096329	21.86	21.812	21.908	-0.013895	1203	103	0.8965218	0.06252271	0.89500237	363.22717	0	25.331177						245	5	3	NaN	NaN	NaN	0.72095	1	15703	15703		8.2448	1.8149	1	37993			3152	5531	1830	1864	2481	2481					-0.09966548561305899
EDLNQGILQQF	11	Unmodified	_EDLNQGILQQF_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.8276916550501	2	652.827692	1303.64083	0.94147	0.00061462	-4.8458	-0.0031635	-3.9043	-0.0025488	652.824498288234	32.08	0.096497	32.08	32.056	32.152	0	1134	49	0.9387595	0.029343128	0.9387595	379.98325	0	11.877289						119	5	3	NaN	NaN	NaN	0.57257	1	18831	18831		15.822	6.2103	1	12504			3153	5599	1831	1865	2482	2482					0.0011555949267858523
EDLNQGILQQF	11	Unmodified						0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	652.827692	1303.64083	0.33218	0.00021685	-10.3	-0.0067244	-9.9682	-0.0065075	653.3171195203785	32.079	0.096546	32.075	32.027	32.123	-0.0037613	1134	49	0.9387595	0.029340029	0.93724006	379.98328		11.876007	-0.0024316	-0.0048729	-0.00075972	NaN	15.822	86	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9755.6			3154	5599	1831	1865							0.0011555949267858523
EDLPQLVVM	9	Oxidation (M)	_EDLPQLVVM(Oxidation (M))_		EDLPQLVVM(1)		EDLPQLVVM(42)	0	0	1			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2731750663	2	530.273175	1058.5318	1.0164	0.00053895	-1.482	-0.00078587	-0.46564	-0.00024692	530.2725806273316	22.428	0.26492	22.414	22.318	22.583	-0.013731	1287	85	0.8449601	0.051634252	0.84344065	342.84506	0	20.950745						539	12	4	NaN	NaN	NaN	0.060816	1	10784	10784		42.318	11.707	1	112290	+		3155	9898	1832	1866	2483	2483		650			0.004872572688327637
EDLPQLVVM	9	Oxidation (M)						0	0	1			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.273175	1058.5318	2.0069	0.0010642	-2.6722	-0.001417	-0.66535	-0.00035282	530.2719471735795	22.405	0.28918	22.405	22.308	22.597	0	1290	73	0.84311575	0.04425788	0.84311575	342.0967		17.957764	-0.0048326	-0.00058972	-0.00016247	NaN	42.318	507	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122500	+		3156	9898	1832	1866				650			0.004872572688327637
EDLPQLVVM	9	Oxidation (M)						0	0	1			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.273175	1058.5318	1.0164	0.00053895	-1.482	-0.00078587	-0.46564	-0.00024692	530.2725806273316	22.428	0.26492	22.414	22.318	22.583	-0.013731	1287	85	0.8449601	0.051634252	0.84344065	342.84506		20.950745	0.0048326	0.00067256	0.00016247	NaN	42.318	539	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112290	+		3157	9898	1832	1866				650			0.004872572688327637
EDLVDSYSL	9	Unmodified	_EDLVDSYSL_					0	0	0			REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.4782475482	1	1040.47825	1039.47097	1.2028	0.0012515	0.94817	0.00098655	2.151	0.0022381	1040.4791461684492	32.249	0.096519	32.249	32.225	32.321	0	162	91	1.5228153	0.053167343	1.5228153	309.02005	0	10.7890625						176	5	2	NaN	NaN	NaN	0.56671	1	10175	10175		6.8632	0	1	19898	+		3158	13413	1833	1867	2484	2484					-0.04718556509737937
EDLVDSYSL	9	Unmodified						0	0	0			REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1040.47825	1039.47097	1.2028	0.0012515	0.94817	0.00098655	2.151	0.0022381	1040.4791461684492	32.249	0.096519	32.249	32.225	32.321	0	162	91	1.5228153	0.053167343	1.5228153	309.02005		10.7890625	0.0024316	-0.00026027	0.0016456	NaN	6.8632	176	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19898	+		3159	13413	1833	1867							-0.04718556509737937
EDLVDSYSL	9	Unmodified						0	0	0			REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	REV__tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1040.47825	1039.47097	0.78677	0.00081862	1.3909	0.0014472	2.1777	0.0022658	1040.4810149481125	32.248	0.072426	32.244	32.22	32.292	-0.0037613	165	91	1.5210435	0.053156137	1.5195241	308.66052		10.786774	-0.0024316	0.00020039	-0.0016456	NaN	6.8632	244	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20733	+		3160	13413	1833	1867							-0.04718556509737937
EDMVSEEEEE	10	Unmodified	_EDMVSEEEEE_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2242730805	2	613.224273	1224.43399	0.56954	0.00034926	3.0023	0.0018411	3.5718	0.0021903	613.727448914447	30.245	0.12062	30.238	30.214	30.335	-0.0064106	1212	34	0.8910048	0.020231187	0.88948536	360.898	0	8.19455						143	6	3	NaN	NaN	NaN	0.72631	1	16388	16388		6.2502	1.9401	1	12094			3161	4801	1834	1868	2485	2485					-0.16924640908496258
EDMYLDDTV	9	Unmodified	_EDMYLDDTV_					0	0	0		tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	tr|U7T2H3|U7T2H3_FUSNUMagnesiumtransporterMgtEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00566PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.4865952644999	3	367.486595	1099.43796	1.8954	0.00069654	7.8134	0.0028713	9.7088	0.0035678	367.82372416609246	27.711	0.072386	27.702	27.677	27.75	-0.009552	1503	28	0.711653	0.016727626	0.71013355	432.921	0	10.175934						69	4	3	NaN	NaN	NaN	0.66529	1	12475	12475		1.04	0	1	3789			3162	13959	1835	1869	2486	2486					-0.10778506624137663
EDNGIIKAF	9	Unmodified	_EDNGIIKAF_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.76383180050004	2	503.763832	1005.51311	1.1578	0.00058327	-0.92252	-0.00046473	0.2353	0.00011854	503.76283432517454	22.524	0.096495	22.511	22.462	22.559	-0.013733	1305	40	0.83389086	0.023992479	0.8323714	338.5827	0	9.741608						93	5	2	NaN	NaN	NaN	0.030696	1	8631	8631		58.2	26.639	1	12749			3163	4947	1836	1870	2487	2487					0.010574636892897615
EDNIWTVR	8	Unmodified	_EDNIWTVR_					0	0	0		ENST00000421285.3_1_15:72957287-72958024:+|nuORF	ENST00000421285.3_1_15:72957287-72958024:+|nuORF	ENST00000421285.3_1_15:72957287-72958024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7590807736001	2	516.759081	1031.50361	0.93775	0.00048459	-4.2352	-0.0021886	-3.2974	-0.001704	516.7577150511937	32.875	0.12061	32.872	32.848	32.969	-0.0031052	1275	52	0.85233563	0.0313375	0.8508162	345.95407	0	12.719543						170	6	3	NaN	NaN	NaN	0.78967	1	9628	9628		10.605	0.85897	1	22081			3164	6913	1837	1871	2488	2488					-0.010883045962373217
EDNLYFWKYFS	11	Unmodified	_EDNLYFWKYFS_					0	0	0			REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	REV__tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3457172327	2	756.345717	1510.67688	1.9738	0.0014929	1.2771	0.00096594	3.2509	0.0024588	756.3464532872791	25.033	0.072386	25.021	24.996	25.069	-0.012011	1002	40	1.0192708	0.023732305	1.0177513	411.97845	0	9.592407						83	4	3	NaN	NaN	NaN	0.75376	1	19597	19597		3.9281	1.0386	1	6220.9	+		3165	13405	1838	1872	2489	2489					-0.05802983330477218
EDNVDPDYW	9	Unmodified	_EDNVDPDYW_					0	0	0		CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	CHD3|p.E1311D|1|0.09|ENSG00000170004|chr17:7904480-7904480|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.72764325945	2	576.727643	1151.44073	1.4946	0.00086198	-0.5891	-0.00033975	0.90551	0.00052223	576.7273750928755	19.876	0.26475	19.861	19.813	20.078	-0.014141	1245	46	0.87076044	0.027620852	0.869241	352.94727	0	11.195618						398	12	4	NaN	NaN	NaN	0.25448	1	14340	14340		21.835	2.7167	1	76914			3166	105	1839	1873	2490	2490					-0.12892915174938935
EDPDTATLM	9	Unmodified	_EDPDTATLM_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4241034877002	1	992.424103	991.416827	2.0833	0.0020675	3.0519	0.0030287	5.1352	0.0050963	992.4278913993852	19.972	0.096357	19.958	19.934	20.03	-0.014141	309	37	1.435777	0.021373272	1.4342575	291.5425	0	4.339966						65	5	2	NaN	NaN	NaN	0.61413	1	8082	8082		4.9097	0.94122	1	5423.3	+		3167	11366	1840	1874	2491	2491					-0.07922471932954522
EDPDYAVMAHL	11	Unmodified	_EDPDYAVMAHL_					0	0	0			REV__ENST00000521249.1_1_14:102698870-102698954:-|nuORF	REV__ENST00000521249.1_1_14:102698870-102698954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.7818955554001	2	630.781896	1259.54924	2.1107	0.0013314	-4.5341	-0.00286	-2.4234	-0.0015286	630.7792228445878	17.717	0.21578	17.717	17.645	17.861	0	1158	76	0.92408	0.04590559	0.92408	374.17868	0	18.588104						399	10	3	NaN	NaN	NaN	0.69801	1	17979	17979		7.5876	0.60324	1	60904	+		3168	8652	1841	1875	2492	2492					-0.07015447196158675
EDPPVFEEIK	10	Unmodified	_EDPPVFEEIK_					0	0	0			REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.8006112373	2	601.800611	1201.58667	0.67506	0.00040625	0.81168	0.00048847	1.4867	0.00089472	601.8014307587935	32.73	0.048275	32.727	32.679	32.727	-0.0031052	1158	67	0.92408	0.040407836	0.9225606	374.37433	0	16.370514						84	3	2	NaN	NaN	NaN	0.77513	1	15875	15875		1.7022	0	1	11547	+		3169	12198	1842	1876	2493	2493					-0.006060326589022225
EDPRRRFLWAE	11	Unmodified	_EDPRRRFLWAE_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.8811242090502	2	737.881124	1473.7477	1.363	0.0010057	-8.0909	-0.0059701	-6.7279	-0.0049644	737.8752589008228	29.714	0.16888	29.707	29.61	29.779	-0.0070648	1002	49	1.0192708	0.029216886	1.0177513	412.0722	0	11.811859						108	8	2	NaN	NaN	NaN	0.72342	1	19495	19495		5.9198	0.7309	1	8916.1			3170	7593;5637	1843	1877	2494	2494					0.02977154497716583
EDPVLTAL	8	Unmodified	_EDPVLTAL_					0	0	0		nc|ENSG00000069018|Q9HCX4-2|TRPC7;TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant;nc|ENSG00000069018|Q9HCX4-3|TRPC7;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000069018|ENST00000513104|TRPC7;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000069018|Q9HCX4-2|TRPC7	nc|ENSG00000069018|Q9HCX4-2|TRPC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4614752719998	1	857.461475	856.454199	1.505	0.0012905	-4.4565	-0.0038213	-2.9515	-0.0025308	857.457192608982	36.928	0.26477	36.928	36.88	37.145	0	528	55	1.3052634	0.032299876	1.3052634	265.61304	0	6.572815						172	12	2	NaN	NaN	NaN	0.8439	1	5490	5490		3.1533	0	1	15721			3171	739	1844	1878	2495	2495					0.020229873949347166
EDQPILEIT	9	Unmodified	_EDQPILEIT_					0	0	0		ADAMTS10|p.T300I|1|0.28|ENSG00000142303|chr19:8597128-8597128|G/A|missense_variant	ADAMTS10|p.T300I|1|0.28|ENSG00000142303|chr19:8597128-8597128|G/A|missense_variant	ADAMTS10|p.T300I|1|0.28|ENSG00000142303|chr19:8597128-8597128|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5411821559999	1	1057.54118	1056.53391	2.3892	0.0025266	-2.0526	-0.0021707	0.3366	0.00035597	1057.5383647293186	22.429	0.072243	22.429	22.38	22.453	0	198	28	1.5015416	0.015964627	1.5015416	304.6386	0	3.2389526						43	4	2	NaN	NaN	NaN	0.13602	1	10941	10941		30.61	4.4952	1	2231.6			3172	7	1845	1879	2496	2496					0.007900092782847423
EDRSLKRAEWV	11	Unmodified	_EDRSLKRAEWV_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.58088047739994	3	463.58088	1387.72081	0.82911	0.00038436	7.7739	0.0036038	8.603	0.0039882	463.58411051242797	22.452	0.096382	22.438	22.414	22.511	-0.013733	1398	37	0.77658504	0.022220135	0.7750656	471.2063	0	13.482483						50	5	2	NaN	NaN	NaN	0.77544	1	19030	19030		0.7918	0.53355	1	6603.2	+		3173	10420	1846	1880	2497	2497					0.042460458864979955
EDRTRFYGAEI	11	Unmodified	_EDRTRFYGAEI_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.8307656602502	2	678.830766	1355.64698	1.2507	0.00084904	-10.161	-0.0068975	-8.9102	-0.0060485	679.3255737411005	34.01	0.024117	34.01	34.01	34.035	0	1089	28	0.96624947	0.01647973	0.96624947	390.95303	0	6.6678467						31	2	2	NaN	NaN	NaN	0.73717	1	19613	19613		5.0169	0.28779	1	1796.7			3174	2125	1847	1881	2498	2498					-0.01661922275775396
EDSDMFDNLI	10	Unmodified	_EDSDMFDNLI_					0	0	0			REV__ENST00000372591.1_2_1:41848017-41848350:+|nuORF	REV__ENST00000372591.1_2_1:41848017-41848350:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.750261076	2	599.750261	1197.48597	1.3395	0.00080337	-4.2775	-0.0025654	-2.938	-0.0017621	599.747590055717	30.294	0.12065	30.294	30.222	30.342	0	1182	46	0.9093879	0.027561188	0.9093879	368.4364	0	11.166382						155	6	3	NaN	NaN	NaN	0.74182	1	16371	16371		5.1889	0	1	20044	+		3175	11223	1848	1882	2499	2499					-0.10487432704076127
EDSDMFDNLI	10	Unmodified						0	0	0			REV__ENST00000372591.1_2_1:41848017-41848350:+|nuORF	REV__ENST00000372591.1_2_1:41848017-41848350:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.750261	1197.48597	1.3395	0.00080337	-4.2775	-0.0025654	-2.938	-0.0017621	599.747590055717	30.294	0.12065	30.294	30.222	30.342	0	1182	46	0.9093879	0.027561188	0.9093879	368.4364		11.166382	0.015747	-0.00070883	0.00075972	NaN	5.1889	155	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20044	+		3176	11223	1848	1882							-0.10487432704076127
EDSDVLVPL	9	Unmodified	_EDSDVLVPL_					0	0	0			REV__nc|ENSG00000153214|Q96K49-2|TMEM87B	REV__nc|ENSG00000153214|Q96K49-2|TMEM87B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5040683681999	1	986.504068	985.496792	2.3512	0.0023195	-0.43537	-0.00042949	1.9158	0.00189	986.5037544902733	23.224	0.12053	23.224	23.2	23.32	0	273	61	1.4571344	0.035573006	1.4571344	295.90366	0	7.2239075						117	6	3	NaN	NaN	NaN	0.056143	1	8061	8061		44.302	2.5178	1	10051	+		3177	10071	1849	1883	2500	2500					0.003463377325147121
EDSDVLVPL	9	Unmodified						0	0	0			REV__nc|ENSG00000153214|Q96K49-2|TMEM87B	REV__nc|ENSG00000153214|Q96K49-2|TMEM87B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	986.504068	985.496792	2.3512	0.0023195	-0.43537	-0.00042949	1.9158	0.00189	986.5037544902733	23.224	0.12053	23.224	23.2	23.32	0	273	61	1.4571344	0.035573006	1.4571344	295.90366		7.2239075	0.006929	0.00048748	-0.0010187	NaN	44.302	117	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10051	+		3178	10071	1849	1883							0.003463377325147121
EDSEALMKVA	10	Unmodified	_EDSEALMKVA_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7657141749501	2	546.765714	1091.51688	2.0184	0.0011036	-9.3218	-0.0050968	-7.3034	-0.0039932	547.261494730262	25.756	0.12066	25.745	25.721	25.841	-0.0116	1239	88	0.87444305	0.05341184	0.8729236	354.67014	0	21.663605						318	6	3	NaN	NaN	NaN	0.70677	1	12139	12139		7.5876	1.3374	1	33200	+		3179	9071	1850	1884	2501	2501					-0.025222345991551265
EDSFMIEFL	9	Unmodified	_EDSFMIEFL_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.5074391866	1	1130.50744	1129.50016	1.2631	0.0014279	2.9598	0.0033461	4.2229	0.004774	1130.5108423261238	35.12	0.12067	35.12	35.096	35.217	0	57	76	1.5847093	0.04414451	1.5847093	321.2441	0	8.94873						238	6	3	NaN	NaN	NaN	0.14301	1	14051	14051		29.598	1.8095	1	23264	+		3180	11310	1851	1885	2502	2502					-0.05940735485091864
EDVDSPAS	8	Unmodified	_EDVDSPAS_					0	0	0		nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-6|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.3366686889	1	819.336669	818.329392	1.8704	0.0015325	-6.0973	-0.0049957	-4.2269	-0.0034632	819.3316515117805	29.231	0.096518	29.224	29.2	29.296	-0.0077209	519	37	1.310647	0.021535516	1.3091276	266.90482	0	4.3855896						70	5	2	NaN	NaN	NaN	0.84455	1	4887	4887		2.7852	0	1	3757.4			3181	1622	1852	1886	2503	2503					-0.08703929812224942
EDVMAYNKLN	10	Unmodified	_EDVMAYNKLN_					0	0	0		ENST00000566672.5_1_15:72638574-72647950:-|nuORF;ENST00000563762.5_1_15:72640446-72647950:-|nuORF	ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENST00000566672.5_1_15:72638574-72647950:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.7844382443501	2	598.784438	1195.55432	0.68629	0.00041094	-7.9265	-0.0047462	-7.2402	-0.0043353	598.7801394660245	30.052	0.12068	30.045	30.021	30.142	-0.0064106	1125	40	0.9442611	0.023834884	0.94274163	382.57227	0	9.65683						146	6	3	NaN	NaN	NaN	0.65442	1	15682	15682		11.17	0	1	13948			3182	7627	1853	1887	2504	2504					-0.03563143333531116
EDVTRDWQL	9	Unmodified	_EDVTRDWQL_					0	0	0		ENST00000252444.9_2_19:11243984-11244110:+|nuORF	ENST00000252444.9_2_19:11243984-11244110:+|nuORF	ENST00000252444.9_2_19:11243984-11244110:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2803773217	2	581.280377	1160.5462	1.2468	0.00072472	-8.7876	-0.0051081	-7.5409	-0.0043834	581.2748225993712	26.866	0.16894	26.856	26.783	26.952	-0.010645	1206	64	0.894683	0.038606524	0.89316356	362.6102	0	15.647003						228	8	4	NaN	NaN	NaN	0.094712	1	14644	14644		36.586	4.1337	1	19111			3183	6278	1854	1888	2505	2505					-0.027649542586686948
EDVWEFIWM	9	Unmodified	_EDVWEFIWM_					0	0	0		ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.77862458495	2	627.778625	1253.5427	1.0236	0.00064257	2.066	0.001297	3.0895	0.0019395	627.779772534224	34.829	0.21698	34.828	34.756	34.973	-0.0006485	1140	52	0.93509084	0.031192243	0.9335714	378.65683	0	12.6310425						236	10	4	NaN	NaN	NaN	0.40649	1	17098	17098		20.555	10.195	1	21222			3184	798	1855	1889	2506	2506					-0.07393340356907174
EDWIRGVEW	9	Unmodified	_EDWIRGVEW_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2854626996001	2	595.285463	1188.55637	1.1361	0.0006763	-9.4713	-0.0056381	-8.3352	-0.0049618	595.2797254489385	27.157	0.19304	27.157	27.157	27.35	0	1209	58	0.892844	0.034937263	0.892844	361.76468	0	14.155975						172	9	2	NaN	NaN	NaN	0.11323	1	16106	16106		25.801	12.798	1	54985			3185	2893	1856	1890	2507	2507					-0.030363465334176
EDYTVLMYRD	10	Unmodified	_EDYTVLMYRD_					0	0	0			REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	REV__ENST00000481908.5_1_X:134654863-134703297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.79500293065	2	652.795003	1303.57545	0.76963	0.00050241	-1.2233	-0.00079857	-0.45368	-0.00029616	652.7939262449454	37.41	0.33688	37.41	37.29	37.626	0	1140	49	0.93509084	0.029346347	0.93509084	378.49847	0	11.878571						244	15	2	NaN	NaN	NaN	0.69717	1	18827	18827		8.2448	0.65722	1	28754	+		3186	10379	1857	1891	2508	2508					-0.06419178024702887
EEAAPAAP	8	Unmodified	_EEAAPAAP_					0	0	0		nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF	nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3570102004999	1	755.35701	754.349734	1.6932	0.001279	5.4766	0.0041368	7.1698	0.0054158	755.3607752376139	25.033	0.19304	25.033	24.96	25.153	0	570	85	1.2801172	0.050356984	1.2801172	261.0523	0	10.269226						312	9	3	NaN	NaN	NaN	0.79379	1	4140	4140		10.052	0	1	40948			3187	416	1858	1892	2509	2509					-0.037267143617782494
EEAAPAAP	8	Unmodified	_EEAAPAAP_					0	0	0		nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF	nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3570102004999	1	755.35701	754.349734	1.7081	0.0012902	4.9012	0.0037022	6.6093	0.0049924	755.3601061809403	25.033	0.21712	25.021	24.948	25.165	-0.012011	570	67	1.2801172	0.03954935	1.2785977	261.0523	0	8.065247						288	10	3	NaN	NaN	NaN	0.79379	1	4059	4059		10.052	0	1	38477			3188	416	1858	1892	2510	2510					-0.037267143617782494
EEADKLVRQY	10	Unmodified	_EEADKLVRQY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.55069836346667	3	417.550698	1249.63027	1.899	0.00079294	0.090594	3.7828E-05	1.9896	0.00083077	417.55128167729447	15.772	0.11979	15.759	15.735	15.855	-0.012611	1434	46	0.75435036	0.027803838	0.7528309	458.21295	0	16.888824						100	6	3	NaN	NaN	NaN	0.65442	1	17017	17017		6.1406	0	1	7251.6			3189	1526	1859	1893	2511	2511					0.01543576838230365
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8087706204001	2	575.808771	1149.60299	1.7028	0.00098049	0.93625	0.0005391	2.639	0.0015196	576.3114900646843	15.462	0.12011	15.462	15.438	15.558	0	1200	88	0.89836043	0.05333686	0.89836043	364.14127	0	21.619568						222	6	4	NaN	NaN	NaN	0.026267	1	14792	14792		81.699	42.241	1	29089			3190	3450	1860	1894	2512	2512					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.2082725691333	3	384.208273	1149.60299	1.7958	0.00068998	-2.1619	-0.00083061	-0.36602	-0.00014063	384.2072216607158	15.508	0.14379	15.496	15.448	15.592	-0.012202	1455	34	0.7413668	0.020409405	0.73984736	450.75363	0	12.408997						116	7	3	NaN	NaN	NaN	0.33202	1	14288	14288		16.858	3.7571	1	10166			3191	3450	1860	1894	2513	2513					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8087706204001	2	575.808771	1149.60299	1.5178	0.00087396	-1.6378	-0.00094303	-0.11997	-6.9077E-05	575.8083010251671	15.484	0.16778	15.472	15.448	15.616	-0.012201	1203	40	0.8965218	0.02390188	0.89500237	363.39603	0	9.6883545						153	8	3	NaN	NaN	NaN	0.026267	1	14289	14289		63.731	36.434	1	19371			3192	3450	1860	1894	2514	2514					0.034170932978668134
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.26185021755	2	584.26185	1166.50915	2.1756	0.0012711	-1.6722	-0.00097702	0.5034	0.00029412	584.2608262474591	22.429	0.16857	22.429	22.38	22.549	0	1227	79	0.88180584	0.047827005	0.88180584	357.36963	0	19.382874						480	8	4	NaN	NaN	NaN	0.0027333	1	15345	15345		83.529	38.364	1	95330			3193	477	1861	1895	2515	2515					-0.06744670595094249
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1167.5164239684998	1	1167.51642	1166.50915	2.7426	0.0032021	0.57711	0.00067379	3.3198	0.0038759	1167.5172126740254	22.429	0.096266	22.429	22.405	22.501	0	90	58	1.5652816	0.03357458	1.5652816	317.1842	0	6.803467						160	5	3	NaN	NaN	NaN	0.0004004	1	15346	15346		91.484	50.527	1	14829			3194	477	1861	1895	2516	2516					-0.06744670595094249
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.26185021755	2	584.26185	1166.50915	1.476	0.0008624	-1.154	-0.00067422	0.32208	0.00018818	584.261458708128	22.428	0.19269	22.414	22.366	22.559	-0.013731	1227	85	0.88180584	0.051511586	0.8802864	357.36963	0	20.876099						512	9	4	NaN	NaN	NaN	0.039609	1	14812	14812		55.592	15.438	1	99004			3195	477	1861	1895	2517	2517					-0.06744670595094249
EEAENTLQSF	10	Unmodified	_EEAENTLQSF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1167.5164239684998	1	1167.51642	1166.50915	1.9315	0.002255	-0.54799	-0.00063978	1.3835	0.0016152	1167.516578843377	22.428	0.12039	22.414	22.39	22.511	-0.013731	87	67	1.5670487	0.038877964	1.5655292	317.5423	0	7.878113						189	6	3	NaN	NaN	NaN	1.7454E-09	1	14813	14813		140.58	94.749	1	17399			3196	477	1861	1895	2518	2518					-0.06744670595094249
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.89239587629993	3	419.892396	1256.65536	1.6583	0.00069629	-2.0236	-0.00084968	-0.36529	-0.00015338	419.89173224500126	25.226	0.07242	25.226	25.202	25.274	0	1410	34	0.76917666	0.020376205	0.76917666	467.19037	0	12.376312						65	4	2	NaN	NaN	NaN	0.64158	1	17933	17933		13.101	8.0843	1	7884.9			3197	170;3312	1862	1896	2519	2519					0.03729676431453299
EEAFAIFRKF	10	Unmodified	_EEAFAIFRKF_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.89239587629993	3	419.892396	1256.65536	1.5646	0.00065698	0.11596	4.8691E-05	1.6806	0.00070567	419.89320038844687	25.298	0.16883	25.286	25.238	25.407	-0.012011	1407	31	0.77102906	0.018522859	0.7695096	468.3155	0	11.25058						124	8	3	NaN	NaN	NaN	0.5917	1	17164	17164		12.307	7.6892	1	9897			3198	170;3312	1862	1896	2520	2520					0.03729676431453299
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.24072084495	2	524.240721	1046.46689	1.9403	0.0010172	0.24445	0.00012815	2.1847	0.0011453	524.2405285601387	18.122	0.16798	18.108	18.06	18.228	-0.013948	1290	37	0.84311575	0.022133768	0.8415963	342.14734	0	8.982147						126	8	2	NaN	NaN	NaN	0.21199	1	10259	10259		24.562	0	1	15876			3199	1982	1863	1897	2521	2521					-0.054486012128108996
EEALIIPPDAV	11	Unmodified	_EEALIIPPDAV_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.5482948158333	3	389.548295	1165.62306	1.7014	0.00066278	0.17197	6.6992E-05	1.8734	0.00072977	389.5466372163551	20.285	0.048071	20.285	20.261	20.309	0	1467	31	0.7339432	0.018561065	0.7339432	446.16745	0	11.283325						31	3	2	NaN	NaN	NaN	0.76488	1	15330	15330		0.9877	0	1	1816.8			3200	7828;7829;2996	1864	1898	2522	2522					0.046868442377899555
EEALQTIFNRW	11	Unmodified	_EEALQTIFNRW_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.8567834455	2	703.856783	1405.69901	0.98266	0.00069165	-3.7001	-0.0026043	-2.7175	-0.0019127	703.8556315587251	29.015	0.14481	29.015	28.967	29.112	0	1089	40	0.96624947	0.023806632	0.96624947	390.8125	0	9.628906						128	7	4	NaN	NaN	NaN	0.0071196	1	20108	20108		72.093	54.124	1	11521			3201	5034	1865	1899	2523	2523					0.012392411379323676
EEALQTIFNRW	11	Unmodified	_EEALQTIFNRW_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.8567834455	2	703.856783	1405.69901	0.878	0.00061799	-4.7419	-0.0033376	-3.8639	-0.0027196	703.8538735598378	29.014	0.096529	29.007	28.982	29.079	-0.0077209	1092	52	0.9644182	0.031135082	0.96289873	390.0718	0	12.593018						123	5	4	NaN	NaN	NaN	0.49762	1	19160	19160		18.558	13.369	1	10165			3202	5034	1865	1899	2524	2524					0.012392411379323676
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.56975853943334	3	462.569759	1384.68745	1.196	0.00055323	-0.18994	-8.7862E-05	1.0061	0.00046537	462.570641765573	17.093	0.096052	17.093	17.069	17.165	0	1383	46	0.7858409	0.027767718	0.7858409	476.8328	0	16.848877						112	5	3	NaN	NaN	NaN	0.72321	1	19933	19933		5.9336	0.64891	1	10481			3203	5300	1866	1900	2525	2525					0.010489993239616524
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3509995758501	2	693.351	1384.68745	1.7276	0.0011978	0.06407	4.4423E-05	1.7916	0.0012422	693.3511586761796	17.117	0.096052	17.117	17.069	17.165	0	1092	34	0.9644182	0.02014625	0.9644182	390.12946	0	8.149628						104	5	3	NaN	NaN	NaN	0.08406	1	19934	19934		52.195	31.746	1	8190.3			3204	5300	1866	1900	2526	2526					0.010489993239616524
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3509995758501	2	693.351	1384.68745	1.6045	0.0011125	-0.44235	-0.00030671	1.1621	0.00080575	693.3499040402725	17.114	0.096066	17.1	17.076	17.172	-0.013569	1095	37	0.9625867	0.021978915	0.96106726	389.38858	0	8.890961						78	5	2	NaN	NaN	NaN	0.28375	1	19004	19004		33.567	28.117	1	9441.1			3205	5300	1866	1900	2527	2527					0.010489993239616524
EEAQFETKKLY	11	Unmodified	_EEAQFETKKLY_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.56975853943334	3	462.569759	1384.68745	1.1532	0.00053343	0.99638	0.00046089	2.1496	0.00099432	462.5700541686111	17.114	0.11997	17.1	17.076	17.196	-0.013569	1383	37	0.7858409	0.022208154	0.7843215	476.8328	0	13.475464						111	6	3	NaN	NaN	NaN	0.64873	1	19005	19005		10.822	7.7859	1	10799			3206	5300	1866	1900	2528	2528					0.010489993239616524
EEAQVRKENQW	11	Unmodified	_EEAQVRKENQW_					0	0	0		ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.9003901826667	3	472.90039	1415.67934	1.2357	0.00058434	-3.2519	-0.0015378	-2.0162	-0.00095348	472.89878254222685	13.204	0.072087	13.204	13.18	13.252	0	1422	37	0.7617651	0.022237062	0.7617651	462.1242	0	13.490082						80	4	2	NaN	NaN	NaN	0.68634	1	20191	20191		8.3538	1.9974	1	7595.2			3207	1921	1867	1901	2529	2529					-0.011871348727936493
EEASIYSRW	9	Unmodified	_EEASIYSRW_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000490209.5_1_6:31655268-31655864:-|nuORF;ENST00000475742.5_1_6:31654991-31656600:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7696454599001	2	570.769645	1139.52474	1.4427	0.00082344	-2.8623	-0.0016337	-1.4196	-0.00081029	570.7668606769132	20.838	0.14458	20.838	20.79	20.935	0	1233	64	0.87812483	0.038644075	0.87812483	355.97632	0	15.665619						176	7	3	NaN	NaN	NaN	0.5168	1	14422	14422		8.9191	0.67428	1	19650			3208	5884	1868	1902	2530	2530					-0.03944339287386356
EEASIYSRW	9	Unmodified						0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000490209.5_1_6:31655268-31655864:-|nuORF;ENST00000475742.5_1_6:31654991-31656600:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.769645	1139.52474	0.68661	0.0003919	-8.762	-0.0050011	-8.0754	-0.0046092	570.7634917340912	20.911	0.1686	20.897	20.752	20.921	-0.014086	1236	73	0.876284	0.044157505	0.8747646	355.23013		17.900665	0.029225	-0.0033951	-0.0016801	NaN	8.9191	225	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25999			3209	5884	1868	1902							-0.03944339287386356
EEAVTTAIL	9	Unmodified	_EEAVTTAIL_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5091537461	1	946.509154	945.501877	2.3081	0.0021847	-0.7678	-0.00072673	1.5403	0.0014579	946.5088158556913	25.636	0.21717	25.636	25.612	25.829	0	306	127	1.4375578	0.07486236	1.4375578	292.09845	0	15.211334						442	10	4	NaN	NaN	NaN	0.10956	1	6967	6967		34.439	2.8777	1	125710	+		3210	9182	1869	1903	2531	2531					0.026946415951329072
EECTIDNMEH	10	Unmodified	_EECTIDNMEH_					0	0	0		tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.7315453941001	2	610.731545	1219.44854	1.1991	0.00073234	4.4824	0.0027376	5.6815	0.0034699	610.73412619297	22.356	0.12057	22.356	22.308	22.429	0	1173	43	0.91489893	0.025719583	0.91489893	370.5931	0	10.418091						159	6	4	NaN	NaN	NaN	0.77024	1	16960	16960		2.8895	0	1	18785			3211	13994	1870	1904	2532	2532					-0.15240847241329902
EEDNPVIRSY	10	Unmodified	_EEDNPVIRSY_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.86305349419996	3	407.863053	1220.56733	1.7282	0.00070487	-3.4674	-0.0014142	-1.7392	-0.00070935	407.8629359864659	22.79	0.048189	22.79	22.766	22.814	0	1521	31	0.70049703	0.018599331	0.70049703	425.6115	0	11.30069						46	3	2	NaN	NaN	NaN	0.72369	1	16993	16993		3.3044	0	1	3086.3			3212	5738	1871	1905	2533	2533					-0.03412988949821738
EEDPLDMQPTW	11	Unmodified	_EEDPLDMQPTW_					0	0	0			REV__ENSG00000187715|ENST00000405109|KBTBD12	REV__ENSG00000187715|ENST00000405109|KBTBD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.19570385736654	3	454.195704	1359.56528	2.0558	0.00093373	-11.688	-0.0053085	-9.632	-0.0043748	454.19075335495666	18.098	0.096014	18.084	18.036	18.132	-0.013786	1362	28	0.79879075	0.01664257	0.7972713	484.77896	0	10.10022						86	5	3	NaN	NaN	NaN	0.77278	1	18769	18769		0.43218	0	1	5802.4	+		3213	11033	1872	1906	2534	2534					-0.10011785749952651
EEDSNDQCNNQ	11	Unmodified	_EEDSNDQCNNQ_					0	0	0			REV__ENST00000532490.1_1_11:36022639-36250762:+|nuORF	REV__ENST00000532490.1_1_11:36022639-36250762:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.4862055315333	3	432.486206	1294.43679	0.98746	0.00042706	4.9021	0.0021201	5.8896	0.0025472	432.48822929415815	31.283	0.072424	31.277	31.253	31.326	-0.0050716	1449	28	0.74507743	0.016694963	0.743558	452.4093	0	10.137146						42	4	2	NaN	NaN	NaN	0.71677	1	17827	17827		6.3563	3.0519	1	5320.7	+		3214	10802	1873	1907	2535	2535					-0.19865372730964737
EEDTLTRNFFY	11	Unmodified	_EEDTLTRNFFY_					0	0	0			REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.8893796950333	3	478.88938	1433.64631	2.1892	0.0010484	-6.4406	-0.0030843	-4.2514	-0.0020359	478.8865554177054	18.436	0.095894	18.436	18.412	18.508	0	1455	37	0.7413668	0.02226597	0.7413668	449.69513	0	13.506012						90	5	3	NaN	NaN	NaN	0.73455	1	20293	20293		3.5945	2.4925	1	8484.1	+		3215	13414	1874	1908	2536	2536					-0.05316761715539542
EEDTLTRNFFY	11	Unmodified						0	0	0			REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	REV__tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	478.88938	1433.64631	2.1892	0.0010484	-6.4406	-0.0030843	-4.2514	-0.0020359	478.8865554177054	18.436	0.095894	18.436	18.412	18.508	0	1455	37	0.7413668	0.02226597	0.7413668	449.69513		13.506012	-0.027636	0.00054361	-0.00016798	NaN	3.5945	90	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8484.1	+		3216	13414	1874	1908							-0.05316761715539542
EEDYRTLTNY	10	Unmodified	_EEDYRTLTNY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.2936816622001	2	652.293682	1302.57281	1.571	0.0010247	-1.1388	-0.00074285	0.43215	0.00028189	652.2932575390821	19.588	0.16805	19.588	19.564	19.732	0	1161	37	0.9222442	0.022028744	0.9222442	373.3015	0	8.916687						108	8	2	NaN	NaN	NaN	0.0036584	1	18820	18820		80.442	58.671	1	14382			3217	1821	1875	1909	2537	2537					-0.06637310157975662
EEDYRTLTNY	10	Unmodified	_EEDYRTLTNY_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.2936816622001	2	652.293682	1302.57281	1.097	0.00071559	-1.4428	-0.0009411	-0.34572	-0.00022551	652.2927332961464	19.611	0.14442	19.597	19.549	19.693	-0.014141	1161	40	0.9222442	0.02386576	0.92072475	373.3015	0	9.660278						127	7	3	NaN	NaN	NaN	0.6772	1	17987	17987		9.6116	0.64966	1	12402			3218	1821	1875	1909	2538	2538					-0.06637310157975662
EEEAASDTSN	10	Unmodified	_EEEAASDTSN_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7043651284	2	526.704365	1051.39418	1.8734	0.00098675	3.438	0.0018108	5.3115	0.0027976	526.7065323411397	25.491	0.2171	25.491	25.395	25.612	0	1314	64	0.8283535	0.038778067	0.8283535	336.13617	0	15.735687						269	10	4	NaN	NaN	NaN	0.69717	1	10668	10668		8.2448	0	1	34147	+		3219	10883	1876	1910	2539	2539					-0.12946399796896912
EEEAASDTSN	10	Unmodified						0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.704365	1051.39418	1.8734	0.00098675	3.438	0.0018108	5.3115	0.0027976	526.7065323411397	25.491	0.2171	25.491	25.395	25.612	0	1314	64	0.8283535	0.038778067	0.8283535	336.13617		15.735687	0.0061477	-0.00010601	-0.00016327	NaN	8.2448	269	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34147	+		3220	10883	1876	1910							-0.12946399796896912
EEEAASDTSN	10	Unmodified						0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.704365	1051.39418	1.6476	0.00086781	3.6132	0.0019031	5.2608	0.0027709	526.7065839094913	25.491	0.21714	25.479	25.455	25.672	-0.012011	1311	52	0.83019954	0.031384945	0.8286801	336.88525		12.735657	-0.0061477	7.8456E-05	0.00016327	NaN	8.2448	234	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33469	+		3221	10883	1876	1910							-0.12946399796896912
EEEDDLGEVYG	11	Unmodified	_EEEDDLGEVYG_					0	0	0			REV__ENST00000483551.6_1_15:69072422-69081590:-|nuORF	REV__ENST00000483551.6_1_15:69072422-69081590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.7540549752	2	627.754055	1253.49356	1.1949	0.0007501	-7.5411	-0.004734	-6.3462	-0.0039839	627.7488989187764	22.524	0.24116	22.511	22.438	22.679	-0.013733	1170	61	0.91673553	0.03673041	0.9152161	371.2242	0	14.873688						359	11	4	NaN	NaN	NaN	0.59385	1	17093	17093		14.425	2.3763	1	90402	+		3222	9793	1877	1911	2540	2540					-0.12305001902791446
EEEDFHKAIE	10	Unmodified	_EEEDFHKAIE_					0	0	0			REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.19105868913323	3	416.191059	1245.55135	1.5745	0.00065528	1.6114	0.00067065	3.1859	0.0013259	416.1919550874736	25.033	0.12065	25.033	25.009	25.129	0	1416	37	0.76547134	0.022237062	0.76547134	464.9847	0	13.507874						115	6	3	NaN	NaN	NaN	0.76854	1	17645	17645		3.3044	0.043437	1	12492	+		3223	9424	1878	1912	2541	2541					-0.061606951867361204
EEEDTYEKVF	10	Unmodified	_EEEDTYEKVF_					0	0	0		ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.7826154493998	2	644.782615	1287.55068	1.9613	0.0012646	-11.122	-0.0071715	-9.1612	-0.005907	644.775428624607	29.57	0.14477	29.57	29.522	29.667	0	1134	97	0.9387595	0.05869901	0.9387595	380.03308	0	23.762817						474	7	4	NaN	NaN	NaN	0.66626	1	18553	18553		10.36	0.74852	1	100290			3224	1372	1879	1913	2542	2542					-0.08159534626452114
EEEEDDYHESA	11	Unmodified	_EEEEDDYHESA_					0	0	0			REV__ENSG00000110200|ENST00000227618|ANAPC15	REV__ENSG00000110200|ENST00000227618|ANAPC15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.4968760764999	3	451.496876	1351.4688	1.062	0.0004795	0.0501	2.262E-05	1.1121	0.00050212	451.49740830607476	28.17	0.072422	28.161	28.137	28.209	-0.0089779	1398	34	0.77658504	0.020367384	0.7750656	471.3308	0	12.361542						89	4	3	NaN	NaN	NaN	0.77278	1	18678	18678		0.43218	0	1	7094.8	+		3225	9075	1880	1914	2543	2543					-0.19287681776177124
EEEEDDYHESA	11	Unmodified						0	0	0			REV__ENSG00000110200|ENST00000227618|ANAPC15	REV__ENSG00000110200|ENST00000227618|ANAPC15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	451.496876	1351.4688	1.062	0.0004795	0.0501	2.262E-05	1.1121	0.00050212	451.49740830607476	28.17	0.072422	28.161	28.137	28.209	-0.0089779	1398	34	0.77658504	0.020367384	0.7750656	471.3308		12.361542	0.0072103	-0.00041492	-0.0016855	NaN	0.43218	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7094.8	+		3226	9075	1880	1914							-0.19287681776177124
EEEEDEIADEL	11	Unmodified	_EEEEDEIADEL_					0	0	0			REV__ENSG00000169946|ENST00000407775|ZFPM2	REV__ENSG00000169946|ENST00000407775|ZFPM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.84902682530003	3	440.849027	1319.52525	1.4205	0.00062621	0.023469	1.0346E-05	1.4439	0.00063656	440.8492464253165	15.22	0.048042	15.208	15.184	15.232	-0.012202	1395	37	0.7784366	0.02221781	0.77691716	472.5702	0	13.4878845						49	3	2	NaN	NaN	NaN	0.77797	1	18251	18251		0.1369	0	1	5486.5	+		3227	10568	1881	1915	2544	2544					-0.1217305393947754
EEEEEEMPLAD	11	Unmodified	_EEEEEEMPLAD_					0	0	0			REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.7610227275501	2	660.761023	1319.50749	1.3168	0.00087007	7.9604	0.0052599	9.2772	0.00613	660.7658864908167	21.296	0.096292	21.296	21.272	21.368	0	1128	70	0.9424274	0.04220128	0.9424274	381.41977	0	17.079712						144	5	3	NaN	NaN	NaN	0.57804	1	19103	19103		15.463	0	1	15535	+		3228	9895	1882	1916	2545	2545					-0.13948092465989248
EEEEEEMPLAD	11	Unmodified						0	0	0			REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	660.761023	1319.50749	1.3168	0.00087007	7.9604	0.0052599	9.2772	0.00613	660.7658864908167	21.296	0.096292	21.296	21.272	21.368	0	1128	70	0.9424274	0.04220128	0.9424274	381.41977		17.079712	0.006921	0.0020058	0.00075972	NaN	15.463	144	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15535	+		3229	9895	1882	1916							-0.13948092465989248
EEEEEEMPLAD	11	Unmodified						0	0	0			REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	660.761023	1319.50749	1.5483	0.0010231	4.9434	0.0032664	6.4917	0.0042895	660.7656527421555	21.296	0.12023	21.282	21.258	21.378	-0.014006	1128	46	0.9424274	0.027510703	0.94090796	381.41977		11.134155	-0.006921	-0.0019812	-0.00075972	NaN	15.463	148	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14502	+		3230	9895	1882	1916							-0.13948092465989248
EEEEIEKEGSE	11	Unmodified	_EEEEIEKEGSE_					0	0	0		ENST00000605039.5_1_12:51675285-51695971:-|nuORF;nc|ENSG00000110934|Q9UBW5-2|BIN2;nc|ENSG00000110934|Q9UBW5-3|BIN2;ENSG00000110934|ENST00000615107|BIN2	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.2778942122499	2	654.277894	1306.54124	0.7252	0.00047448	7.4602	0.0048811	8.1854	0.0053556	654.7846603458446	22.308	0.096329	22.294	22.27	22.366	-0.013731	1137	49	0.9369253	0.029349506	0.93540585	379.23193	0	11.879578						127	5	3	NaN	NaN	NaN	0.7072	1	18039	18039		6.9844	0.55443	1	14344			3231	1786	1883	1917	2546	2546					-0.09977347702624684
EEEEIEKEGSE	11	Unmodified						0	0	0		ENST00000605039.5_1_12:51675285-51695971:-|nuORF;nc|ENSG00000110934|Q9UBW5-2|BIN2;nc|ENSG00000110934|Q9UBW5-3|BIN2;ENSG00000110934|ENST00000615107|BIN2	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	ENST00000605039.5_1_12:51675285-51695971:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.277894	1306.54124	1.3696	0.00089609	4.0218	0.0026314	5.3914	0.0035275	654.2809433608294	22.308	0.12061	22.308	22.284	22.405	0	1137	49	0.9369253	0.029349506	0.9369253	379.23193		11.879547	0.0070692	-0.0025815	0.00075972	NaN	6.9844	159	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15759			3232	1786	1883	1917							-0.09977347702624684
EEEELLPEEP	10	Unmodified	_EEEELLPEEP_					0	0	0			REV__nc|ENSG00000125744|O75298-2|RTN2	REV__nc|ENSG00000125744|O75298-2|RTN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.27716593075	2	607.277166	1212.53978	0.99665	0.00060524	3.5	0.0021255	4.4966	0.0027307	607.2805717584924	30.631	0.07238	30.625	30.553	30.625	-0.0057545	1191	58	0.90387505	0.034907043	0.9023556	366.15106	0	14.140533						78	4	2	NaN	NaN	NaN	0.76548	1	16112	16112		3.5698	0	1	5167.6	+		3233	9401	1884	1918	2547	2547					-0.05798937000713522
EEEEREIKSS	10	Unmodified	_EEEEREIKSS_					0	0	0		ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant	ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.5298514710333	3	412.529851	1234.56773	1.3459	0.00055521	-4.1727	-0.0017214	-2.8268	-0.0011661	412.86243038569654	24.019	0.096491	24.006	23.982	24.079	-0.012747	1467	49	0.7339432	0.029704094	0.7324238	445.87643	0	18.045502						143	5	4	NaN	NaN	NaN	0.75466	1	16657	16657		2.0359	0.5103	1	10384			3234	3	1885	1919	2548	2548					-0.040176140206312994
EEEGAQVPI	9	Unmodified	_EEEGAQVPI_					0	0	0		ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENST00000586052.5_1_17:76435259-76454697:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.4680172129	1	971.468017	970.460741	2.223	0.0021596	1.4097	0.0013694	3.6327	0.003529	971.468108812453	22.38	0.048218	22.38	22.38	22.429	0	357	37	1.407258	0.021407366	1.407258	285.83618	0	4.348175						40	3	2	NaN	NaN	NaN	0.39244	1	7609	7609		14.042	0.30454	1	2285.6			3235	7698	1886	1920	2549	2549					-0.025671194443361856
EEEGKRTFEEI	11	Unmodified	_EEEGKRTFEEI_					0	0	0			REV__ENSG00000120500|ENST00000307959|ARR3	REV__ENSG00000120500|ENST00000307959|ARR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.8278886203001	2	683.827889	1365.64122	1.8216	0.0012457	0.36843	0.00025195	2.1901	0.0014976	684.3295776370304	30.318	0.31367	30.318	30.198	30.511	0	1095	64	0.9625867	0.038452744	0.9625867	389.44226	0	15.557159						302	14	3	NaN	NaN	NaN	0.57257	1	19749	19749		15.822	0	1	33831	+		3236	9314	1887	1921	2550	2550					-0.02697065578126967
EEEKMYSF	8	Unmodified	_EEEKMYSF_					0	0	0			REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.4448389298	1	1062.44484	1061.43756	1.5667	0.0016645	-1.188	-0.0012621	0.37875	0.0004024	1062.4433676054941	30.052	0.14481	30.045	30.021	30.166	-0.0064106	162	40	1.5228153	0.023028135	1.5212959	308.9363	0	4.6717834						67	7	2	NaN	NaN	NaN	0.78264	1	10909	10909		11.548	5.2982	1	4605.4	+		3237	12251	1888	1922	2551	2551					-0.09069881553296
EEENLLQVVW	10	Unmodified	_EEENLLQVVW_					0	0	0		ENST00000506936.1_1_4:56768485-56770658:+|nuORF;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1	ENST00000506936.1_1_4:56768485-56770658:+|nuORF	ENST00000506936.1_1_4:56768485-56770658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8193353067	2	629.819335	1257.62412	1.1712	0.00073761	-2.4886	-0.0015674	-1.3175	-0.00082976	629.8179952684519	34.155	0.096466	34.155	34.155	34.252	0	1182	76	0.9093879	0.045900643	0.9093879	368.23563	0	18.586395						100	5	3	NaN	NaN	NaN	0.44412	1	17948	17948		21.771	4.9128	1	8106.6			3238	1069	1889	1923	2552	2552					0.005610586067177792
EEEPPDIW	8	Unmodified	_EEEPPDIW_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4414681114	1	1014.44147	1013.43419	1.9405	0.0019685	-0.16752	-0.00016994	1.7729	0.0017985	1014.4406028664057	28.725	0.1448	28.725	28.677	28.822	0	276	70	1.4553556	0.04091549	1.4553556	295.43002	0	8.305664						198	7	3	NaN	NaN	NaN	0.40747	1	9104	9104		36.036	0	1	18505	+		3239	8607	1890	1924	2553	2553					-0.07198808335658669
EEEPVRDLL	9	Unmodified	_EEEPVRDLL_					0	0	0			REV__nc|ENSG00000100462|O14744-4|PRMT5	REV__nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5629802306	1	1099.56298	1098.5557	2.0087	0.0022087	-8.203	-0.0090198	-6.1943	-0.0068111	1099.5536829835848	24.381	0.14482	24.368	24.32	24.465	-0.012749	108	43	1.5546752	0.024756193	1.5531558	315.263	0	5.020172						106	7	2	NaN	NaN	NaN	0.46215	1	12452	12452		11.17	0	1	8077	+		3240	8822	1891	1925	2554	2554					0.01036814026861066
EEEQRRRWESL	11	Unmodified	_EEEQRRRWESL_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.3764029719002	2	759.376403	1516.73825	1.2612	0.00095776	2.0688	0.001571	3.33	0.0025287	759.3778325053353	32.78	0.12064	32.78	32.732	32.852	0	987	64	1.0283957	0.0382998	1.0283957	415.65155	0	15.479828						226	6	4	NaN	NaN	NaN	0.64656	1	20637	20637		10.965	2.046	1	27551	+		3241	8955	1892	1926	2555	2555					0.0005534142155738664
EEEQRRRWESL	11	Unmodified						0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	759.376403	1516.73825	1.2612	0.00095776	2.0688	0.001571	3.33	0.0025287	759.3778325053353	32.78	0.12064	32.78	32.732	32.852	0	987	64	1.0283957	0.0382998	1.0283957	415.65155		15.479828	-0.0099751	-0.00013417	-0.00015248	NaN	10.965	226	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27551	+		3242	8955	1892	1926							0.0005534142155738664
EEEQRRRWESL	11	Unmodified						0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	759.376403	1516.73825	1.2201	0.00092655	2.3058	0.001751	3.5259	0.0026775	759.3777108347753	32.803	0.14476	32.8	32.751	32.896	-0.0031052	984	70	1.03022	0.041956425	1.0287007	416.38892		16.957733	0.0099751	0.00022581	0.00015248	NaN	10.965	263	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30215	+		3243	8955	1892	1926							0.0005534142155738664
EEFDARWVTY	10	Unmodified	_EEFDARWVTY_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.30130972905	2	658.30131	1314.58807	1.4741	0.00097041	-1.6381	-0.0010784	-0.16399	-0.00010795	658.2995996408359	25.057	0.14477	25.057	25.009	25.153	0	1128	49	0.9424274	0.02933681	0.9424274	381.4346	0	11.873688						215	7	3	NaN	NaN	NaN	0.0072459	1	19024	19024		74.794	53.023	1	32511			3244	5124	1893	1927	2556	2556					-0.05664398570161211
EEFDARWVTY	10	Unmodified	_EEFDARWVTY_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.30130972905	2	658.30131	1314.58807	1.484	0.00097693	-0.42277	-0.00027831	1.0612	0.00069862	658.8016725747273	25.057	0.26541	25.045	24.948	25.214	-0.012011	1128	61	0.9424274	0.03666711	0.94090796	381.4346	0	14.840515						356	12	4	NaN	NaN	NaN	0.12314	1	18186	18186		42.779	26.957	1	38081			3245	5124	1893	1927	2557	2557					-0.05664398570161211
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.1963669677	3	422.196367	1263.56727	1.5469	0.00065308	-3.394	-0.0014329	-1.8471	-0.00077984	422.19474889952176	25.033	0.14477	25.033	25.009	25.153	0	1416	37	0.76547134	0.022234678	0.76547134	464.91217	0	13.504303						187	7	4	NaN	NaN	NaN	0.1507	1	18070	18070		28.495	21.365	1	31986			3246	3189	1894	1928	2558	2558					-0.05396944159156192
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.79091221825	2	632.790912	1263.56727	1.7541	0.00111	-1.9688	-0.0012458	-0.21465	-0.00013583	632.7903450845424	25.033	0.19302	25.033	24.985	25.178	0	1149	61	0.92958635	0.036702693	0.92958635	376.3953	0	14.861145						269	9	3	NaN	NaN	NaN	0.029876	1	18071	18071		58.398	43.222	1	40915			3247	3189	1894	1928	2559	2559					-0.05396944159156192
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.1963669677	3	422.196367	1263.56727	1.2467	0.00052634	-1.4881	-0.00062827	-0.24143	-0.00010193	422.19543133703706	25.081	0.21716	25.069	25.021	25.238	-0.012011	1413	46	0.7673241	0.027794778	0.76580465	466.03748	0	16.881287						220	10	4	NaN	NaN	NaN	0.3106	1	17280	17280		18.233	9.3144	1	31904			3248	3189	1894	1928	2560	2560					-0.05396944159156192
EEFDFHVRW	9	Unmodified	_EEFDFHVRW_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.79091221825	2	632.790912	1263.56727	1.5594	0.00098677	-0.97759	-0.00061861	0.5818	0.00036816	632.7901765885146	25.057	0.12062	25.045	25.021	25.141	-0.012011	1152	58	0.92775106	0.034865677	0.9262317	375.6522	0	14.11734						163	6	2	NaN	NaN	NaN	0.034172	1	17281	17281		52.78	39.777	1	33981			3249	3189	1894	1928	2561	2561					-0.05396944159156192
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8031539262502	2	599.803154	1197.59175	1.4099	0.00084568	-0.28306	-0.00016978	1.1269	0.0006759	599.8031179405549	25.274	0.16883	25.262	25.214	25.382	-0.012011	1173	73	0.91489893	0.04408604	0.9133795	370.66882	0	17.861359						251	8	3	NaN	NaN	NaN	0.19179	1	15751	15751		36.235	19.651	1	63180			3250	5340	1895	1929	2562	2562					0.0008627120373603248
EEFFEIRTEW	10	Unmodified	_EEFFEIRTEW_					0	0	0		ENST00000485986.1_1_6:3739369-3751753:-|nuORF;ENST00000477592.2_1_6:3737425-3751765:-|nuORF;PXDC1|p.F127Sfs*13|1|0.06|ENSG00000168994|chr6:3737165-3737166|-/G|frameshift_variant;PXDC1|p.F127Afs*15|1|0.06|ENSG00000168994|chr6:3737166-3737167|-/GAAATGC|frameshift_variant;ENSG00000168994|ENST00000380283|PXDC1	ENST00000485986.1_1_6:3739369-3751753:-|nuORF	ENST00000485986.1_1_6:3739369-3751753:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3222421364002	2	693.322242	1384.62993	1.5156	0.0010508	-4.5357	-0.0031447	-3.0201	-0.0020939	693.3175224447446	28.605	0.16891	28.605	28.556	28.725	0	1083	40	0.9699114	0.023801506	0.9699114	392.35178	0	9.628265						90	8	2	NaN	NaN	NaN	0.46425	1	19930	19930		20.936	12.659	1	7818.3			3251	4647	1896	1930	2563	2563					-0.046998428815868465
EEFFEIRTEW	10	Unmodified						0	0	0		ENST00000485986.1_1_6:3739369-3751753:-|nuORF;ENST00000477592.2_1_6:3737425-3751765:-|nuORF;PXDC1|p.F127Sfs*13|1|0.06|ENSG00000168994|chr6:3737165-3737166|-/G|frameshift_variant;PXDC1|p.F127Afs*15|1|0.06|ENSG00000168994|chr6:3737166-3737167|-/GAAATGC|frameshift_variant;ENSG00000168994|ENST00000380283|PXDC1	ENST00000485986.1_1_6:3739369-3751753:-|nuORF	ENST00000485986.1_1_6:3739369-3751753:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	693.322242	1384.62993	1.3207	0.00091565	-2.9174	-0.0020227	-1.5967	-0.0011071	693.3203005389547	28.604	0.12063	28.596	28.547	28.668	-0.0083504	1083	40	0.9699114	0.02379638	0.96839195	392.35175		9.62616	-0.0045503	0.00099692	-0.00075972	NaN	20.936	61	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5091.6			3252	4647	1896	1930							-0.046998428815868465
EEFGIMWGK	9	Unmodified	_EEFGIMWGK_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.76023486655	2	548.760235	1095.50592	1.0249	0.00056244	6.6826	0.0036672	7.7076	0.0042296	548.7637881184015	32.394	0.0965	32.394	32.37	32.466	0	1251	40	0.8670771	0.023940682	0.8670771	351.6665	0	9.709747						88	5	2	NaN	NaN	NaN	0.55027	1	12638	12638		7.5404	0.67717	1	10659	+		3253	9629	1897	1931	2564	2564					-0.038015921827991406
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2323644966	2	531.232364	1060.45018	1.7805	0.00094587	-1.01	-0.00053655	0.77051	0.00040932	531.2318005451785	29.377	0.38614	29.377	29.28	29.667	0	1269	94	0.8560222	0.057181895	0.8560222	347.32547	0	23.201202						584	17	4	NaN	NaN	NaN	0.030669	1	11097	11097		58.235	30.447	1	154600			3254	6036	1898	1932	2565	2565					-0.0776310209876101
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.4574525265998	1	1061.45745	1060.45018	1.9548	0.0020749	0.57798	0.0006135	2.5328	0.0026884	1061.4573865804916	29.377	0.2896	29.377	29.329	29.618	0	153	118	1.5281296	0.06912124	1.5281296	310.0181	0	14.022919						657	13	4	NaN	NaN	NaN	5.6012E-05	1	11099	11099		125.59	75.276	1	183930			3255	6036	1898	1932	2566	2566					-0.0776310209876101
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2323644966	2	531.232364	1060.45018	0.94935	0.00050433	-0.27804	-0.0001477	0.67131	0.00035662	531.232122019096	29.376	0.26543	29.368	29.32	29.586	-0.0077229	1266	76	0.85786515	0.046094477	0.8563457	348.07324	0	18.702545						569	12	5	NaN	NaN	NaN	0.019103	1	10856	10856		73.133	25.997	1	174510			3256	6036	1898	1932	2567	2567					-0.0776310209876101
EEFGQAFSF	9	Unmodified	_EEFGQAFSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4574525265998	1	1061.45745	1060.45018	1.4948	0.0015867	1.0762	0.0011424	2.571	0.002729	1061.457818954771	29.376	0.41019	29.368	29.32	29.73	-0.0077229	150	115	1.5299006	0.06734526	1.5283811	310.3774	0	13.662628						604	18	4	NaN	NaN	NaN	0.013093	1	10858	10858		83.529	44.07	1	160240			3257	6036	1898	1932	2568	2568					-0.0776310209876101
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.25363125495	2	545.253631	1088.49271	1.5975	0.00087106	-0.44066	-0.00024027	1.1569	0.00063078	545.2532742752027	24.068	0.24133	24.068	23.995	24.237	0	1269	70	0.8560222	0.04237485	0.8560222	347.21072	0	17.187622						438	11	4	NaN	NaN	NaN	0.012018	1	12304	12304		86.792	49.49	1	171860			3258	5873	1899	1933	2569	2569					-0.047997069705161266
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.25363125495	2	545.253631	1088.49271	1.7267	0.00094152	-1.6219	-0.00088436	0.10482	5.7154E-05	545.252531475987	24.092	0.19301	24.079	24.031	24.224	-0.012749	1269	67	0.8560222	0.040534675	0.85450274	347.21072	0	16.441223						442	9	4	NaN	NaN	NaN	0.0050453	1	11995	11995		102.5	65.193	1	165610			3259	5873	1899	1933	2570	2570					-0.047997069705161266
EEFILKQF	8	Unmodified	_EEFILKQF_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E;ENST00000509377.1_3_4:77172961-77230323:+|nuORF;nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5615236676	1	1053.56152	1052.55425	2.2205	0.0023394	-3.7565	-0.0039577	-1.536	-0.0016183	1053.561685501216	55.22	0.12028	55.22	55.172	55.292	0	60	106	1.582944	0.061841488	1.582944	321.16953	0	12.547241						400	6	5	NaN	NaN	NaN	0.8439	1	10747	10747		3.1533	0	1	30649			3260	5584	1900	1934	2571	2571					0.030072247287762366
EEFITSEVVQ	10	Unmodified	_EEFITSEVVQ_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.79024351625	2	590.790244	1179.56593	1.4019	0.00082821	5.4792	0.003237	6.881	0.0040652	591.2955778424918	27.591	0.16891	27.591	27.543	27.712	0	1182	58	0.9093879	0.034895778	0.9093879	368.50012	0	14.140411						82	8	2	NaN	NaN	NaN	0.66626	1	15811	15811		10.36	4.2698	1	6350.1			3261	6576	1901	1935	2572	2572					-0.016666230385681047
EEFLEEQCYM	10	Unmodified	_EEFLEEQCYM_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.8422731670667	3	440.842273	1319.50499	1.2048	0.00053111	5.0178	0.0022121	6.2226	0.0027432	440.8450256620148	21.296	0.072165	21.282	21.258	21.33	-0.014006	1416	34	0.76547134	0.020382881	0.7639519	464.69934	0	12.373932						83	4	3	NaN	NaN	NaN	0.62764	1	18249	18249		7.1304	1.8457	1	7947.4	+		3262	10492	1902	1936	2573	2573					-0.14198219404647716
EEFLEEQCYM	10	Unmodified						0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	440.842273	1319.50499	0.95786	0.00042227	6.1025	0.0026903	7.0604	0.0031125	440.84497011298544	21.296	0.072247	21.296	21.272	21.344	0	1419	34	0.76361835	0.020382881	0.76361835	463.57443		12.373932	0.006921	0.00067197	-0.00016677	NaN	7.1304	95	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9243	+		3263	10492	1902	1936							-0.14198219404647716
EEFLEEQCYM	10	Unmodified						0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	440.842273	1319.50499	1.2048	0.00053111	5.0178	0.0022121	6.2226	0.0027432	440.8450256620148	21.296	0.072165	21.282	21.258	21.33	-0.014006	1416	34	0.76547134	0.020382881	0.7639519	464.69934		12.373932	-0.006921	-0.00076263	0.00016677	NaN	7.1304	83	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7947.4	+		3264	10492	1902	1936							-0.14198219404647716
EEFLNRLMCN	10	Unmodified	_EEFLNRLMCN_					0	0	0			REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.5302523873334	3	423.530252	1267.56893	1.4288	0.00060514	-7.7396	-0.003278	-6.3109	-0.0026728	423.52656537868563	23.899	0.096447	23.899	23.875	23.971	0	1401	31	0.77473325	0.018516839	0.77473325	470.52142	0	11.24588						67	5	2	NaN	NaN	NaN	0.70538	1	18171	18171		7.6826	3.0651	1	7270.7	+		3265	9387	1903	1937	2574	2574					-0.054153944570316526
EEFLNRLMCN	10	Unmodified						0	0	0			REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	423.530252	1267.56893	1.4288	0.00060514	-7.7396	-0.003278	-6.3109	-0.0026728	423.52656537868563	23.899	0.096447	23.899	23.875	23.971	0	1401	31	0.77473325	0.018516839	0.77473325	470.52142		11.24588	-0.017463	-4.3915E-05	-0.00016617	NaN	7.6826	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7270.7	+		3266	9387	1903	1937							-0.054153944570316526
EEFLNRLMCN	10	Unmodified						0	0	0			REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	423.530252	1267.56893	1.7436	0.00073847	-7.6346	-0.0032335	-5.891	-0.002495	423.52706729173366	23.947	0.072388	23.934	23.91	23.982	-0.013048	1398	31	0.77658504	0.018516839	0.7750656	471.6461		11.24588	0.017463	8.9561E-05	0.00016617	NaN	7.6826	67	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4193.9	+		3267	9387	1903	1937							-0.054153944570316526
EEFLRQEHF	9	Unmodified	_EEFLRQEHF_					0	0	0		ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.1998885298	3	412.199889	1233.57784	2.0536	0.0008465	-2.3666	-0.0009755	-0.31294	-0.000129	412.1984645501005	18.652	0.095919	18.652	18.628	18.724	0	1446	34	0.7469324	0.02040279	0.7469324	453.7715	0	12.3949585						79	5	3	NaN	NaN	NaN	0.2961	1	17363	17363		17.198	4.6287	1	7788.6			3268	2921	1904	1938	2575	2575					-0.02960961504709303
EEFLRQEHF	9	Unmodified	_EEFLRQEHF_					0	0	0		ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.7961945614001	2	617.796195	1233.57784	1.7765	0.0010975	-1.2699	-0.00078453	0.5066	0.00031297	617.7958925533468	18.652	0.16789	18.652	18.58	18.748	0	1197	37	0.9001988	0.022059679	0.9001988	364.5919	0	8.934448						163	8	3	NaN	NaN	NaN	0.024359	1	17364	17364		66.481	37.586	1	20264			3269	2921	1904	1938	2576	2576					-0.02960961504709303
EEFLRQEHF	9	Unmodified	_EEFLRQEHF_					0	0	0		ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.1998885298	3	412.199889	1233.57784	1.6703	0.00068851	-2.8617	-0.0011796	-1.1914	-0.00049109	412.1988209905092	18.698	0.071932	18.684	18.66	18.731	-0.014059	1446	37	0.7469324	0.022256374	0.74541295	453.7715	0	13.521057						94	4	3	NaN	NaN	NaN	0.31471	1	16636	16636		12.307	7.6892	1	9217.5			3270	2921	1904	1938	2577	2577					-0.02960961504709303
EEFLRQEHF	9	Unmodified	_EEFLRQEHF_					0	0	0		ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.7961945614001	2	617.796195	1233.57784	1.2612	0.00077915	-0.18984	-0.00011728	1.0713	0.00066187	617.7961991766042	18.722	0.14396	18.708	18.66	18.804	-0.014059	1197	40	0.9001988	0.023896694	0.8986794	364.5919	0	9.678467						158	7	3	NaN	NaN	NaN	0.13999	1	16638	16638		30.035	14.573	1	19812			3271	2921	1904	1938	2578	2578					-0.02960961504709303
EEGAAGRK	8	Unmodified	_EEGAAGRK_					0	0	0		ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.4162564139001	1	817.416256	816.40898	1.4808	0.0012105	-10.127	-0.0082784	-8.6467	-0.0070679	817.4073927320526	30.825	0.14478	30.825	30.777	30.922	0	447	106	1.3536539	0.06269491	1.3536539	275.6736	0	12.767914						313	7	3	NaN	NaN	NaN	0.76633	1	4971	4971		13.737	6.8739	1	30158			3272	4109	1905	1939	2579	2579					-0.006568183475678779
EEGDLLLFL	9	Unmodified	_EEGDLLLFL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5561039387	1	1048.5561	1047.54883	2.596	0.0027221	-2.0103	-0.0021079	0.58575	0.00061419	1048.5557567478238	38.177	0.096127	38.18	38.156	38.252	0.0034218	159	37	1.5245869	0.021257877	1.5230675	309.34833	0	4.3133545						52	5	2	NaN	NaN	NaN	0.27442	1	10322	10322		20.555	0	1	2639.5			3273	1726	1906	1940	2580	2580					0.02695501146308743
EEGDQILRV	9	Unmodified	_EEGDQILRV_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.52073915020003	3	353.520739	1057.54039	1.4751	0.00052149	3.4921	0.0012345	4.9673	0.001756	353.52187789805794	24.647	0.096487	24.647	24.598	24.695	0	1557	31	0.67816323	0.01862365	0.67816323	412.74997	0	11.3349						64	5	2	NaN	NaN	NaN	0.56671	1	10992	10992		6.4299	2.5018	1	5702.5			3274	1461	1907	1941	2581	2581					0.013919472296720414
EEGDTFFF	8	Unmodified	_EEGDTFFF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.4043543236	1	991.404354	990.397078	1.1048	0.0010953	-0.44221	-0.00043841	0.66255	0.00065685	991.4035511679435	31.379	0.14475	31.374	31.326	31.47	-0.0050716	294	52	1.4446791	0.030261159	1.4431597	293.3543	0	6.1447754						164	7	3	NaN	NaN	NaN	0.034452	1	8052	8052		101.55	60.094	1	15516			3275	5582	1908	1942	2582	2582					-0.0985047988142469
EEGDTFFF	8	Unmodified						0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	991.404354	990.397078	1.2022	0.0011919	-1.0226	-0.0010138	0.17962	0.00017808	991.4036190719095	31.38	0.14481	31.38	31.332	31.477	0	297	52	1.4428991	0.030264378	1.4428991	292.99286		6.145447	0.0030618	-0.0003685	-0.00013032	NaN	101.55	143	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14338			3276	5582	1908	1942							-0.0985047988142469
EEGERDEKGQE	11	Unmodified	_EEGERDEKGQE_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.2813025684501	2	653.281303	1304.54805	1.4657	0.00095753	-3.2931	-0.0021514	-1.8274	-0.0011938	653.7818723871895	28.315	0.096535	28.315	28.219	28.315	0	1128	49	0.9424274	0.029343128	0.9424274	381.46512	0	11.877197						101	5	3	NaN	NaN	NaN	0.72342	1	18841	18841		5.9198	0.22562	1	10581	+		3277	10736	1909	1943	2583	2583					-0.09203990031369358
EEGIGYNII	9	Unmodified	_EEGIGYNII_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;ENST00000566701.5_1_1:155184905-155187601:-|nuORF	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.25583959290003	2	504.25584	1006.49713	1.5892	0.00080134	0.81335	0.00041014	2.4025	0.0012115	504.2564152612659	26.674	0.09654	26.674	26.625	26.722	0	1311	58	0.83019954	0.035084903	0.83019954	337.07947	0	14.24527						89	5	2	NaN	NaN	NaN	0.25448	1	8837	8837		21.835	1.3863	1	6232.3			3278	5081	1910	1944	2584	2584					-0.005862425476038879
EEHDSYSDQ	9	Unmodified	_EEHDSYSDQ_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2045323039	2	555.204532	1108.39451	2.0122	0.0011172	0.65682	0.00036467	2.669	0.0014819	555.2045382312547	15.556	0.095905	15.544	15.496	15.592	-0.012201	1293	43	0.84127116	0.025831044	0.8397517	341.15097	0	10.474976						75	5	3	NaN	NaN	NaN	0.55027	1	12824	12824		7.5404	2.0745	1	5722			3279	3181	1911	1945	2585	2585					-0.15534980077040927
EEHDSYSDQ	9	Unmodified						0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.204532	1108.39451	1.3692	0.00076017	1.5338	0.00085156	2.9029	0.0016117	555.206139747662	15.558	0.12005	15.558	15.534	15.654	0	1296	34	0.8394264	0.02029252	0.8394264	340.40286		8.229004	0.0070907	0.00043036	-0.00016267	NaN	7.5404	80	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5581.3			3280	3181	1911	1945							-0.15534980077040927
EEHTNVLLLKE	11	Unmodified	_EEHTNVLLLKE_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.85899178345	2	662.858992	1323.70343	1.0866	0.00072029	5.4063	0.0035836	6.493	0.0043039	662.8630325146447	41.257	0.38473	41.257	41.017	41.401	0	1173	67	0.91489893	0.040412188	0.91489893	370.26627	0	16.355103						538	17	3	NaN	NaN	NaN	0.76803	1	19158	19158		2.3381	0.83274	1	74758			3281	5641	1912	1946	2586	2586					0.05452705560855975
EEHTNVLLLKE	11	Unmodified						0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	662.858992	1323.70343	1.2415	0.00082294	7.174	0.0047554	8.4155	0.0055783	662.8640763209795	41.424	0.072273	41.432	41.384	41.457	0.0082626	1167	58	0.91857195	0.034895778	0.9170525	371.75275		14.122589	0.087658	0.0015543	0.0010768	NaN	2.3381	129	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33301			3282	5641	1912	1946							0.05452705560855975
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.2217419863667	3	364.221742	1089.6434	1.8321	0.00066731	-1.6602	-0.00060468	0.17193	6.2622E-05	364.22101331247364	22.79	0.072298	22.79	22.766	22.838	0	1422	40	0.7617651	0.024091423	0.7617651	463.4573	0	14.657227						105	4	3	NaN	NaN	NaN	0.34922	1	12392	12392		15.822	6.8599	1	15784			3283	477	1913	1947	2587	2587					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.8289747462501	2	545.828975	1089.6434	1.8214	0.00099417	-0.83902	-0.00045796	0.98238	0.00053621	545.8286320986206	22.79	0.12058	22.79	22.766	22.887	0	1227	52	0.88180584	0.031286716	0.88180584	357.6641	0	12.690002						207	6	4	NaN	NaN	NaN	0.00068417	1	12394	12394		131.88	70.894	1	67840			3284	477	1913	1947	2588	2588					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.2217419863667	3	364.221742	1089.6434	1.6903	0.00061564	-2.9733	-0.0010829	-1.283	-0.00046728	364.2203488589951	22.862	0.096445	22.848	22.824	22.921	-0.01354	1425	43	0.7599118	0.025946021	0.75839233	462.3297	0	15.785553						121	5	3	NaN	NaN	NaN	0.64643	1	12088	12088		3.5794	1.8772	1	17867			3285	477	1913	1947	2589	2589					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8289747462501	2	545.828975	1089.6434	1.5321	0.00083624	-0.79479	-0.00043382	0.73727	0.00040242	545.8283565075578	22.862	0.21693	22.848	22.8	23.017	-0.01354	1230	49	0.8799654	0.029444695	0.878446	356.9176	0	11.942871						281	10	4	NaN	NaN	NaN	0.061945	1	12090	12090		55.413	23.036	1	67586			3286	477	1913	1947	2590	2590					0.10216059688286805
EEIGSRNFF	9	Unmodified	_EEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.76436311675	2	549.764363	1097.51417	1.4582	0.00080167	1.494	0.00082134	2.9522	0.001623	549.7652894186909	21.73	0.12035	21.73	21.73	21.85	0	1269	40	0.8560222	0.023961365	0.8560222	347.17505	0	9.717957						126	6	3	NaN	NaN	NaN	0.10363	1	12737	12737		35.296	6.63	1	18176			3287	7916	1914	1948	2591	2591					-0.030683219418278895
EEIGSRNFF	9	Unmodified	_EEIGSRNFF_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.76436311675	2	549.764363	1097.51417	1.3658	0.00075087	1.5434	0.00084852	2.9092	0.0015994	549.765669664215	21.753	0.12032	21.74	21.74	21.86	-0.013895	1266	40	0.85786515	0.023958802	0.8563457	347.9225	0	9.716919						97	6	2	NaN	NaN	NaN	0.40649	1	12403	12403		13.463	1.9146	1	16155			3288	7916	1914	1948	2592	2592					-0.030683219418278895
EEIILKEEEP	10	Unmodified	_EEIILKEEEP_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.21509279266667	3	410.215093	1227.62345	1.5337	0.00062914	2.2646	0.00092898	3.7983	0.0015581	410.2157682062919	20.237	0.1923	20.237	20.189	20.381	0	1413	79	0.7673241	0.048190713	0.7673241	466.1847	0	29.278076						363	9	4	NaN	NaN	NaN	0.41164	1	17189	17189		18.558	6.2514	1	99358	+		3289	9468	1915	1949	2593	2593					0.018742191670071406
EEIILKEEEP	10	Unmodified	_EEIILKEEEP_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.21509279266667	3	410.215093	1227.62345	1.4117	0.00057911	3.0157	0.0012371	4.4274	0.0018162	410.21629779218483	20.309	0.19267	20.295	20.246	20.439	-0.014141	1413	79	0.7673241	0.04819596	0.76580465	466.1847	0	29.28128						458	9	4	NaN	NaN	NaN	0.5917	1	16497	16497		12.307	5.6893	1	103800	+		3290	9468	1915	1949	2594	2594					0.018742191670071406
EEIILKEEEP	10	Unmodified						0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	410.215093	1227.62345	1.5337	0.00062914	2.2646	0.00092898	3.7983	0.0015581	410.2157682062919	20.237	0.1923	20.237	20.189	20.381	0	1413	79	0.7673241	0.048190713	0.7673241	466.1847		29.278076	-0.028915	-0.00037613	0.00075972	NaN	18.558	363	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99358	+		3291	9468	1915	1949							0.018742191670071406
EEIILKEEEP	10	Unmodified						0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	410.215093	1227.62345	1.4117	0.00057911	3.0157	0.0012371	4.4274	0.0018162	410.21629779218483	20.309	0.19267	20.295	20.246	20.439	-0.014141	1413	79	0.7673241	0.04819596	0.76580465	466.1847		29.28128	0.028915	0.0005482	-0.00075972	NaN	18.558	458	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103800	+		3292	9468	1915	1949							0.018742191670071406
EEIKTLERY	9	Unmodified	_EEIKTLERY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8140529635501	2	590.814053	1179.61355	2.1047	0.0012435	1.1725	0.00069275	3.2772	0.0019362	590.8151787149764	16.131	0.071987	16.118	16.094	16.166	-0.012995	1191	34	0.90387505	0.020218074	0.9023556	366.26608	0	8.1927185						56	4	2	NaN	NaN	NaN	0.17328	1	15239	15239		27.046	7.8829	1	5376.8			3293	5310	1916	1950	2595	2595					0.030930759523016604
EEIKTLERY	9	Unmodified						0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.814053	1179.61355	1.6705	0.00098698	-3.3395	-0.001973	-1.669	-0.00098604	590.812166212887	16.086	0.11987	16.086	16.062	16.182	0	1194	28	0.902037	0.016540289	0.902037	365.5213		6.702423	-0.016078	-0.0027521	-0.00015929	NaN	27.046	61	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5298.2			3294	5310	1916	1950							0.030930759523016604
EEIQQRLAQF	10	Unmodified	_EEIQQRLAQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3304015194999	2	631.330402	1260.64625	1.7724	0.0011189	-2.9973	-0.0018923	-1.225	-0.00077336	631.3287702297625	21.85	0.096334	21.85	21.802	21.898	0	1155	55	0.92591566	0.033035994	0.92591566	374.91843	0	13.376801						132	5	3	NaN	NaN	NaN	0.13684	1	18014	18014		40.957	25.135	1	15521			3295	5722	1917	1951	2596	2596					0.02635283075096595
EEIQQRLAQF	10	Unmodified	_EEIQQRLAQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3304015194999	2	631.330402	1260.64625	1.3034	0.00082287	-1.7929	-0.0011319	-0.4895	-0.00030903	631.3291662815944	21.85	0.12037	21.836	21.788	21.908	-0.013895	1155	49	0.92591566	0.029365301	0.9243962	374.91843	0	11.890503						159	6	4	NaN	NaN	NaN	0.41164	1	17235	17235		23.118	8.6926	1	15953			3296	5722	1917	1951	2597	2597					0.02635283075096595
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.5629383158999	3	432.562938	1294.66699	1.7418	0.00075342	-2.2538	-0.0009749	-0.51203	-0.00022148	432.56196125764296	23.055	0.14455	23.055	23.031	23.176	0	1377	64	0.7895419	0.038870573	0.7895419	479.40717	0	23.602081						238	7	4	NaN	NaN	NaN	0.27005	1	18681	18681		29.509	13.723	1	41599			3297	3455	1918	1952	2598	2598					0.03143873454769164
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3407692405499	2	648.340769	1294.66699	2.184	0.001416	-2.2662	-0.0014693	-0.082179	-5.328E-05	648.3391548072184	23.055	0.16858	23.055	23.007	23.176	0	1104	55	0.9570911	0.032982588	0.9570911	387.4315	0	13.351379						249	8	4	NaN	NaN	NaN	0.062801	1	18682	18682		61.199	36.798	1	54210			3298	3455	1918	1952	2599	2599					0.03143873454769164
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.5629383158999	3	432.562938	1294.66699	1.3728	0.00059382	-2.731	-0.0011813	-1.3582	-0.00058749	432.5610773799833	23.175	0.1448	23.162	23.114	23.258	-0.013294	1377	64	0.7895419	0.038870573	0.78802246	479.40717	0	23.602081						305	7	4	NaN	NaN	NaN	0.51277	1	17840	17840		18.924	0	1	45974			3299	3455	1918	1952	2600	2600					0.03143873454769164
EEIREAFRVF	10	Unmodified	_EEIREAFRVF_					0	0	0		ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;CALM1|p.E83K|1|0.59|ENSG00000198668|chr14:90403930-90403930|G/A|missense_variant;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000178363|ENST00000315238|CALML3	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	ENST00000597868.5_1_19:47104691-47111872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.3407692405499	2	648.340769	1294.66699	1.7509	0.0011352	-2.2484	-0.0014577	-0.49743	-0.00032251	648.3389757392674	23.175	0.24113	23.162	23.065	23.307	-0.013294	1104	49	0.9570911	0.029317856	0.95557165	387.4315	0	11.867889						311	11	4	NaN	NaN	NaN	0.20888	1	17841	17841		41.839	22.675	1	52414			3300	3455	1918	1952	2601	2601					0.03143873454769164
EEITTGSAW	9	Unmodified	_EEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4523671487001	1	993.452367	992.445091	2.1118	0.0020979	-0.19331	-0.00019205	1.9184	0.0019059	993.4517834109643	22.139	0.14475	22.139	22.115	22.26	0	318	100	1.4304334	0.058748603	1.4304334	290.45334	0	11.929047						224	7	3	NaN	NaN	NaN	0.014046	1	8297	8297		80.639	41.721	1	17590			3301	4168	1919	1953	2602	2602					-0.051434059613711725
EEITTGSAW	9	Unmodified	_EEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4523671487001	1	993.452367	992.445091	1.3917	0.0013826	-0.97136	-0.000965	0.42033	0.00041758	993.4514275866952	22.139	0.16885	22.125	22.101	22.27	-0.013731	321	64	1.4286518	0.03740537	1.4271324	290.0916	0	7.5952454						217	8	3	NaN	NaN	NaN	0.011942	1	8130	8130		87.021	60.289	1	19269			3302	4168	1919	1953	2603	2603					-0.051434059613711725
EEKLMALL	8	Unmodified	_EEKLMALL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5277806982002	1	946.527781	945.520504	0.92357	0.00087418	-2.7137	-0.0025686	-1.7902	-0.0016944	946.5261431801224	32.151	0.07238	32.148	32.123	32.196	-0.0037613	249	64	1.4713576	0.037329912	1.4698381	298.96616	0	7.585083						115	4	3	NaN	NaN	NaN	0.47456	1	6837	6837		32.453	0.89171	1	11312			3303	4883	1920	1954	2604	2604					0.045564799653675436
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.58552005396666	3	463.58552	1387.73473	1.1014	0.00051061	-3.0741	-0.0014251	-1.9726	-0.00091449	463.58407628013225	22.429	0.072199	22.429	22.405	22.477	0	1401	31	0.77473325	0.018516839	0.77473325	470.0827	0	11.235413						78	4	3	NaN	NaN	NaN	0.11462	1	19965	19965		24.904	20.36	1	7574.9			3304	4097	1921	1955	2605	2605					0.056372785949406534
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.8746418476501	2	694.874642	1387.73473	1.5366	0.0010677	-2.205	-0.0015322	-0.66846	-0.0004645	694.8721443405032	22.429	0.048141	22.429	22.405	22.453	0	1077	31	0.9735726	0.01830393	0.9735726	393.82407	0	7.4042053						60	3	3	NaN	NaN	NaN	0.09133	1	19966	19966		40.435	26.487	1	6027			3305	4097	1921	1955	2606	2606					0.056372785949406534
EEKSIDLIQKW	11	Unmodified	_EEKSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.8746418476501	2	694.874642	1387.73473	1.2028	0.00083581	-1.4663	-0.0010189	-0.26346	-0.00018307	694.8737362459838	22.452	0.072227	22.438	22.414	22.486	-0.013733	1074	31	0.9754029	0.018301904	0.97388345	394.56445	0	7.403412						65	4	2	NaN	NaN	NaN	0.045077	1	19031	19031		51.086	28.001	1	6950			3306	4097	1921	1955	2607	2607					0.056372785949406534
EEKSIDLIQKW	11	Unmodified						0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	463.58552	1387.73473	0.8291	0.00038436	-2.2342	-0.0010357	-1.4051	-0.00065137	463.58411051242797	22.452	0.096382	22.438	22.414	22.511	-0.013733	1398	37	0.77658504	0.022220135	0.7750656	471.2063		13.482483	0.0048021	0.00048056	0.00016617	NaN	24.904	50	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6603.2			3307	4097	1921	1955							0.056372785949406534
EEKTISAKY	9	Unmodified	_EEKTISAKY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7822215189001	2	534.782222	1067.54989	1.2344	0.00066015	-1.6476	-0.0008811	-0.41315	-0.00022095	534.7817326165465	12.724	0.21616	12.724	12.7	12.916	0	1272	70	0.854179	0.042402327	0.854179	346.54807	0	17.203003						170	10	3	NaN	NaN	NaN	0.17328	1	11445	11445		27.046	11.584	1	17111			3308	1231	1922	1956	2608	2608					0.01881715515196447
EEKTISAKY	9	Unmodified	_EEKTISAKY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7822215189001	2	534.782222	1067.54989	0.71458	0.00038215	-0.85511	-0.0004573	-0.14052	-7.5149E-05	534.7815694830766	12.75	0.1441	12.741	12.693	12.837	-0.00947	1269	37	0.8560222	0.022117019	0.85450274	347.29584	0	8.973053						153	7	3	NaN	NaN	NaN	0.17328	1	11178	11178		27.046	14.477	1	17643			3309	1231	1922	1956	2609	2609					0.01881715515196447
EEKVYFMLNK	10	Unmodified	_EEKVYFMLNK_					0	0	0		tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	tr|U7SU86|U7SU86_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01340PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8339311259001	2	650.833931	1299.65331	2.0342	0.001324	-11.421	-0.0074333	-9.3869	-0.0061093	650.8269452097226	25.781	0.14477	25.781	25.708	25.853	0	1170	88	0.91673553	0.05321604	0.91673553	371.08054	0	21.541046						342	7	4	NaN	NaN	NaN	0.5358	1	18771	18771		17.97	1.1114	1	47776			3310	13879	1923	1957	2610	2610					0.015468796313598432
EELAALFAPY	10	Unmodified	_EELAALFAPY_					0	0	0		ENSG00000239306|ENST00000310137|RBM14;nc|ENSG00000239306|Q96PK6-3|RBM14;nc|ENSG00000239306|Q96PK6-4|RBM14;ENST00000511114.1_1_11:66384104-66406046:+|nuORF;nc|ENSG00000239306|Q96PK6-2|RBM14;ENST00000512283.1_1_11:66384104-66384788:+|nuORF;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000239306|ENST00000310137|RBM14;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000239306|ENST00000310137|RBM14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.2871397213	2	562.28714	1122.55973	2.0101	0.0011302	-5.7484	-0.0032322	-3.7383	-0.002102	562.2845691348789	16.131	0.11991	16.118	16.094	16.214	-0.012995	1254	61	0.8652351	0.03682977	0.86371565	350.81442	0	14.932831						200	6	3	NaN	NaN	NaN	0.5081	1	13376	13376		19.118	1.1486	1	37155			3311	6059;8045	1924	1958	2611	2611					0.0033490352057015116
EELAGGNK	8	Unmodified	_EELAGGNK_					0	0	0			REV__CASZ1|p.D142N|1|0.24|ENSG00000130940|chr1:10665164-10665164|C/T|missense_variant	REV__CASZ1|p.D142N|1|0.24|ENSG00000130940|chr1:10665164-10665164|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.4050230256001	1	817.405023	816.397747	1.3007	0.0010632	4.741	0.0038753	6.0417	0.0049385	817.4079658742272	30.824	0.16895	30.818	30.77	30.939	-0.0057564	447	100	1.3536539	0.05910611	1.3521345	275.6736	0	12.037048						225	8	2	NaN	NaN	NaN	0.72043	1	4864	4864		17.78	4.0433	1	27510	+		3312	8177	1925	1959	2612	2612					-0.01779640441702668
EELAGGNK	8	Unmodified						0	0	0			REV__CASZ1|p.D142N|1|0.24|ENSG00000130940|chr1:10665164-10665164|C/T|missense_variant	REV__CASZ1|p.D142N|1|0.24|ENSG00000130940|chr1:10665164-10665164|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	817.405023	816.397747	1.3007	0.0010632	4.741	0.0038753	6.0417	0.0049385	817.4079658742272	30.824	0.16895	30.818	30.77	30.939	-0.0057564	447	100	1.3536539	0.05910611	1.3521345	275.6736		12.037048	-0.0034358	0.00043586	-0.00075972	NaN	17.78	225	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27510	+		3313	8177	1925	1959							-0.01779640441702668
EELDEPSL	8	Unmodified	_EELDEPSL_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4254836962001	1	931.425484	930.418207	1.0736	0.00099996	1.6918	0.0015758	2.7654	0.0025757	931.4280394388736	30.872	0.12069	30.866	30.818	30.939	-0.0057545	357	52	1.407258	0.03032887	1.4057386	286.00833	0	6.163971						121	6	2	NaN	NaN	NaN	0.65075	1	6473	6473		22.126	0	1	16007	+		3314	12109	1926	1960	2613	2613					-0.049785145725536495
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		nc|ENSG00000116604|Q14814-4|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3304015195001	2	649.330402	1296.64625	1.8695	0.0012139	-5.2738	-0.0034244	-3.4043	-0.0022105	649.3284466800293	22.573	0.16884	22.573	22.525	22.694	0	1119	70	0.9479278	0.042164862	0.9479278	383.716	0	17.068115						232	8	4	NaN	NaN	NaN	0.24484	1	18713	18713		31.675	7.1134	1	59528			3315	2091	1927	1961	2614	2614					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		nc|ENSG00000116604|Q14814-4|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.2226931685334	3	433.222693	1296.64625	1.504	0.00065155	-3.8701	-0.0016766	-2.3661	-0.0010251	433.22126592297343	22.573	0.19295	22.573	22.525	22.718	0	1386	43	0.78399014	0.025912344	0.78399014	476.02853	0	15.733612						240	9	4	NaN	NaN	NaN	0.31086	1	18714	18714		17.582	1.356	1	55770			3316	2091	1927	1961	2615	2615					0.009792830751621295
EELDGLFRRY	10	Unmodified	_EELDGLFRRY_					0	0	0		nc|ENSG00000116604|Q14814-4|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	nc|ENSG00000116604|Q14814-4|MEF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.2226931685334	3	433.222693	1296.64625	1.0601	0.00045924	-2.4094	-0.0010438	-1.3493	-0.00058456	433.2215138888682	22.621	0.24114	22.607	22.559	22.8	-0.01354	1386	58	0.78399014	0.035176277	0.7824707	476.0285	0	21.358551						287	11	4	NaN	NaN	NaN	0.16973	1	17879	17879		25.694	14.133	1	58356			3317	2091	1927	1961	2616	2616					0.009792830751621295
EELDIENCFA	10	Unmodified	_EELDIENCFA_					0	0	0		CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.75280376495	2	591.752804	1181.49105	1.3122	0.00077651	7.735	0.0045772	9.0473	0.0053537	591.7582080675745	19.25	0.12015	19.236	19.188	19.308	-0.014141	1218	58	0.8873258	0.034952402	0.8858064	359.5534	0	14.163055						88	6	2	NaN	NaN	NaN	0.75966	1	15279	15279		3.9685	0.39873	1	9250.7		+	3318	181	1928	1962	2617	2617					-0.09243128841444559
EELEERLVEW	10	Unmodified	_EELEERLVEW_					0	0	0		ENST00000533863.1_2_11:117073729-117073927:+|nuORF;ENSG00000149591|ENST00000392951|TAGLN	ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENST00000533863.1_2_11:117073729-117073927:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3275244795501	2	666.327524	1330.6405	2.1128	0.0014078	-3.7783	-0.0025176	-1.6655	-0.0011098	666.326055263438	26.046	0.1931	26.046	26.022	26.215	0	1119	55	0.9479278	0.03298968	0.9479278	383.61264	0	13.350464						208	9	3	NaN	NaN	NaN	1.0378E-05	1	19261	19261		117.26	76.306	1	26869			3319	3687	1929	1963	2618	2618					-0.011598602271760683
EELEERLVEW	10	Unmodified	_EELEERLVEW_					0	0	0		ENST00000533863.1_2_11:117073729-117073927:+|nuORF;ENSG00000149591|ENST00000392951|TAGLN	ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENST00000533863.1_2_11:117073729-117073927:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3275244795501	2	666.327524	1330.6405	2.2827	0.001521	-2.9046	-0.0019354	-0.6219	-0.00041439	666.3254072604728	26.046	0.12067	26.035	26.011	26.131	-0.011135	1119	46	0.9479278	0.02749288	0.94640833	383.61264	0	11.125977						155	6	4	NaN	NaN	NaN	3.0843E-05	1	18402	18402		114.98	62.204	1	21435			3320	3687	1929	1963	2619	2619					-0.011598602271760683
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.7824184841501	2	601.782418	1201.55028	1.7593	0.0010587	-2.0346	-0.0012244	-0.27523	-0.00016563	601.7811189894978	17.141	0.23985	17.141	17.117	17.357	0	1200	79	0.89836043	0.04779601	0.89836043	363.95462	0	19.363708						454	11	3	NaN	NaN	NaN	0.011693	1	16516	16516		87.778	31.831	1	108040			3321	2022	1930	1964	2620	2620					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7824184841501	2	601.782418	1201.55028	1.5038	0.00090497	-0.31272	-0.00018819	1.1911	0.00071677	601.782296993758	17.162	0.26389	17.149	17.1	17.364	-0.013569	1200	79	0.89836043	0.047790825	0.896841	363.95462	0	19.361603						536	12	4	NaN	NaN	NaN	0.00012629	1	15869	15869		121.31	57.579	1	114420			3322	2022	1930	1964	2621	2621					-0.0424290955561446
EELGRNLRW	9	Unmodified	_EELGRNLRW_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.8121789766	2	586.812179	1171.60981	2.3797	0.0013964	6.3163	0.0037065	8.696	0.0051029	587.3175270734115	13.853	0.072091	13.853	13.829	13.901	0	1206	31	0.894683	0.018389046	0.894683	362.56992	0	7.4521484						58	4	2	NaN	NaN	NaN	0.67989	1	15548	15548		0.92586	0.23471	1	3929.1	+		3323	9867	1931	1965	2622	2622					0.030864509690673003
EELKGHGA	8	Unmodified	_EELKGHGA_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.4210074408	1	840.421007	839.413731	1.0152	0.00085317	-7.5161	-0.0063167	-6.501	-0.0054636	840.4159569503596	31.694	0.1207	31.694	31.646	31.766	0	453	55	1.3500742	0.032217383	1.3500742	274.81985	0	6.558136						127	6	2	NaN	NaN	NaN	0.75561	1	5262	5262		15.175	0	1	11750			3324	1679	1932	1966	2623	2623					-0.012399342048070139
EELKGHGA	8	Unmodified	_EELKGHGA_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4210074408	1	840.421007	839.413731	0.37153	0.00031224	-7.5505	-0.0063456	-7.179	-0.0060334	840.4132434217036	31.693	0.12066	31.688	31.64	31.761	-0.0044174	450	64	1.3518641	0.037600994	1.3503447	275.18423	0	7.6539917						147	6	3	NaN	NaN	NaN	0.77489	1	5129	5129		12.588	1.0394	1	11353			3325	1679	1932	1966	2624	2624					-0.012399342048070139
EELLSLLL	8	Unmodified	_EELLSLLL_					0	0	0			REV__ENSG00000138768|ENST00000514213|USO1	REV__ENSG00000138768|ENST00000514213|USO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.5553756572002	1	929.555376	928.548099	0.85036	0.00079046	-0.87855	-0.00081666	-0.028192	-2.6206E-05	929.5548699126241	32.851	0.072369	32.848	32.8	32.872	-0.0031052	282	52	1.4517976	0.030245066	1.4502782	295.06915	0	6.147156						133	4	3	NaN	NaN	NaN	0.15767	1	6436	6436		53.324	0	1	13962	+		3326	9745	1933	1967	2625	2625					0.08096706497246942
EELNDLIQRF	10	Unmodified	_EELNDLIQRF_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.830234344	2	638.830234	1275.64592	1.547	0.00098825	-5.4344	-0.0034717	-3.8875	-0.0024834	638.8261280846945	27.446	0.12067	27.446	27.398	27.519	0	1134	49	0.9387595	0.029343128	0.9387595	380.07068	0	11.880005						114	6	3	NaN	NaN	NaN	0.50283	1	18337	18337		19.336	5.2948	1	13431			3327	886	1934	1968	2626	2626					0.019118633552807296
EELNDLIQRF	10	Unmodified						0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	638.830234	1275.64592	1.5419	0.00098502	-6.1197	-0.0039095	-4.5778	-0.0029244	638.8270198795129	27.446	0.12063	27.436	27.411	27.532	-0.010126	1134	55	0.9387595	0.033021748	0.93724006	380.0707		13.369324	-0.0054473	-0.00050532	-0.00075972	NaN	19.336	92	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11315			3328	886	1934	1968							0.019118633552807296
EELNRSVPD	9	Unmodified	_EELNRSVPD_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5112790111	1	1058.51128	1057.504	1.0158	0.0010752	-5.4012	-0.0057173	-4.3855	-0.0046421	1058.5054422881576	38.756	0.1682	38.756	38.66	38.828	0	171	64	1.5174994	0.03722298	1.5174994	307.8726	0	7.5518494						165	8	2	NaN	NaN	NaN	0.45297	1	10979	10979		11.548	0.94349	1	12961			3329	4090	1935	1969	2627	2627					-0.022449296670401964
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2851283486001	2	562.285128	1122.5557	1.9023	0.0010697	-0.66415	-0.00037344	1.2382	0.00069622	562.2847514016001	16.134	0.16805	16.134	16.134	16.302	0	1254	67	0.8652351	0.04051715	0.8652351	350.81442	0	16.427887						211	8	2	NaN	NaN	NaN	0.024359	1	13791	13791		66.481	44.646	1	37237			3330	4630	1936	1970	2628	2628					-0.0006718597312556085
EELRGPERD	9	Unmodified	_EELRGPERD_					0	0	0		ENST00000573536.1_1_17:3920391-3920838:-|nuORF	ENST00000573536.1_1_17:3920391-3920838:-|nuORF	ENST00000573536.1_1_17:3920391-3920838:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.77017677615	2	550.770177	1099.5258	1.3719	0.00075561	6.2029	0.0034164	7.5748	0.004172	550.7733828074978	20.405	0.26484	20.391	20.319	20.584	-0.014141	1524	49	0.698637	0.029762268	0.69711757	283.33823	0	12.070343						348	12	4	NaN	NaN	NaN	0.41766	1	12492	12492		13.003	1.8325	1	67715			3331	7651	1937	1971	2629	2629					-0.0199812491848661
EELSPYTFDLS	11	Unmodified	_EELSPYTFDLS_					0	0	0			REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8008082025501	2	650.800808	1299.58706	0.82428	0.00053644	-8.5514	-0.0055652	-7.7271	-0.0050288	651.2961154599852	20.718	0.14468	20.704	20.632	20.776	-0.014086	1155	64	0.92591566	0.0385316	0.9243962	374.7967	0	15.596985						201	7	5	NaN	NaN	NaN	0.76488	1	17936	17936		2.8895	0.29002	1	12436	+		3332	9731	1938	1972	2630	2630					-0.05074657729687715
EELTVQVARVY	11	Unmodified	_EELTVQVARVY_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.8537094403	2	653.853709	1305.69287	1.5838	0.0010356	-1.8509	-0.0012102	-0.26711	-0.00017465	653.8530776009919	22.79	0.048204	22.79	22.79	22.838	0	1098	40	0.960755	0.023811758	0.960755	388.88	0	9.638153						70	3	3	NaN	NaN	NaN	0.6875	1	18872	18872		8.2775	4.3494	1	6451.9			3333	4011	1939	1973	2631	2631					0.05224722906405077
EELTVQVARVY	11	Unmodified	_EELTVQVARVY_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.8537094403	2	653.853709	1305.69287	1.098	0.00071791	-1.5155	-0.00099092	-0.41753	-0.00027301	653.85315865565	22.814	0.048122	22.8	22.8	22.848	-0.01354	1098	46	0.960755	0.027475119	0.9592356	388.88	0	11.120972						64	3	2	NaN	NaN	NaN	0.073891	1	18037	18037		43.776	23.262	1	6837.1			3334	4011	1939	1973	2632	2632					0.05224722906405077
EEMARHLREY	10	Unmodified	_EEMARHLREY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.21543273533337	3	445.215433	1332.62447	1.3759	0.00061257	-3.3161	-0.0014764	-1.9402	-0.0008638	445.2139746938869	13.421	0.12007	13.421	13.397	13.517	0	1461	46	0.7376554	0.027833998	0.7376554	447.76736	0	16.89563						141	6	3	NaN	NaN	NaN	0.38087	1	19297	19297		20.255	10.619	1	15483			3335	477	1940	1974	2633	2633					-0.02853844945070705
EEMEEEYLK	9	Unmodified	_EEMEEEYLK_					0	0	0			REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5093999032333	3	400.5094	1198.50637	1.3723	0.00054963	3.1206	0.0012498	4.4929	0.0017995	400.84442604814717	15.942	0.047918	15.942	15.918	15.966	0	1410	31	0.76917666	0.018524826	0.76917666	467.43622	0	11.257751						43	3	2	NaN	NaN	NaN	0.61413	1	16412	16412		2.5994	1.2298	1	4688.5	+		3336	10730	1941	1975	2634	2634					-0.08494262044268908
EEMEEEYLK	9	Unmodified						0	0	0			REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	400.5094	1198.50637	1.3723	0.00054963	3.1206	0.0012498	4.4929	0.0017995	400.84442604814717	15.942	0.047918	15.942	15.918	15.966	0	1410	31	0.76917666	0.018524826	0.76917666	467.43622		11.257751	-0.028352	0.0013027	0.00075972	NaN	2.5994	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4688.5	+		3337	10730	1941	1975							-0.08494262044268908
EEMEEEYLK	9	Unmodified						0	0	0			REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	400.5094	1198.50637	2.0982	0.00084034	1.2859	0.000515	3.384	0.0013553	400.510252687055	16.011	0.11981	15.999	15.975	16.094	-0.012611	1410	37	0.76917666	0.02222979	0.7676573	467.43622		13.509277	0.028352	-0.00090181	-0.00075972	NaN	2.5994	109	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8983.8	+		3338	10730	1941	1975							-0.08494262044268908
EEMQYMISWF	10	Unmodified	_EEMQYMISWF_					0	0	0		ENST00000396418.6_1_8:79510623-79510731:+|nuORF	ENST00000396418.6_1_8:79510623-79510731:+|nuORF	ENST00000396418.6_1_8:79510623-79510731:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.288499167	2	682.288499	1362.56245	1.5685	0.0010701	-11.044	-0.0075349	-9.4752	-0.0064648	682.281468670358	24.14	0.21725	24.14	24.092	24.309	0	1116	67	0.94976085	0.04031205	0.94976085	384.26193	0	16.309753						307	10	4	NaN	NaN	NaN	0.24484	1	19712	19712		31.675	8.5896	1	45122			3339	6795	1942	1976	2635	2635					-0.10433332408433671
EEMQYMISWF	10	Unmodified						0	0	0		ENST00000396418.6_1_8:79510623-79510731:+|nuORF	ENST00000396418.6_1_8:79510623-79510731:+|nuORF	ENST00000396418.6_1_8:79510623-79510731:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	682.288499	1362.56245	1.474	0.0010057	-10.838	-0.007395	-9.3645	-0.0063893	682.2803643222279	24.212	0.28958	24.199	24.127	24.417	-0.012749	1113	70	0.9515937	0.042164862	0.95007426	385.00348		17.059418	0.029688	0.00013799	0.00015671	NaN	31.675	351	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45002			3340	6795	1942	1976							-0.10433332408433671
EENFCNKCCH	10	Unmodified	_EENFCNKCCH_					0	0	0			REV__tr|U7SY39|U7SY39_FUSNUAnaerobicribonucleoside-triphosphatereductase-activatingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00946PE=3SV=1	REV__tr|U7SY39|U7SY39_FUSNUAnaerobicribonucleoside-triphosphatereductase-activatingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00946PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.48442580086663	3	409.484426	1225.43145	0.91285	0.0003738	-8.3412	-0.0034156	-7.4284	-0.0030418	409.4810911944087	12.964	0.096086	12.964	12.94	13.036	0	1512	43	0.7060759	0.02603066	0.7060759	428.98218	0	15.8151245						90	5	3	NaN	NaN	NaN	0.76892	1	17108	17108		1.3696	0	1	7964.4	+		3341	13554	1943	1977	2636	2636					-0.17225046328144344
EENGCCSRRQS	11	Unmodified	_EENGCCSRRQS_					0	0	0		ENSG00000183011|ENST00000575771|NAA38;ENST00000333775.9_1_17:7760604-7760823:-|nuORF	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.50839893076665	3	423.508399	1267.50337	2.1331	0.00090339	2.2467	0.00095151	4.3798	0.0018549	423.50928998761464	18.578	0.11995	18.564	18.492	18.612	-0.01395	1482	43	0.72465914	0.025999546	0.7231397	440.10995	0	15.790436						60	6	2	NaN	NaN	NaN	0.77278	1	17357	17357		0.43218	0	1	4000.1			3342	5288	1944	1978	2637	2637					-0.11968415650062525
EENIDMKAI	9	Unmodified	_EENIDMKAI_					0	0	0			REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5135871969999	1	1062.51359	1061.50631	1.3068	0.0013885	0.55182	0.00058631	1.8586	0.0019748	1062.5129724575875	30.801	0.072395	30.801	30.801	30.873	0	63	52	1.5811787	0.03001821	1.5811787	320.7763	0	6.0898438						115	4	3	NaN	NaN	NaN	0.6532	1	11172	11172		3.2116	0.42642	1	7966	+		3343	13602	1945	1979	2638	2638					-0.02198217253612711
EENIDMKAI	9	Unmodified						0	0	0			REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1062.51359	1061.50631	1.3068	0.0013885	0.55182	0.00058631	1.8586	0.0019748	1062.5129724575875	30.801	0.072395	30.801	30.801	30.873	0	63	52	1.5811787	0.03001821	1.5811787	320.7763		6.0898438	-0.0086339	-0.00032335	0.0016425	NaN	3.2116	115	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7966	+		3344	13602	1945	1979							-0.02198217253612711
EENIDMKAI	9	Unmodified						0	0	0			REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	REV__tr|U7T452|U7T452_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00257PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1062.51359	1061.50631	1.4936	0.001587	1.1714	0.0012446	2.665	0.0028316	1062.5131253263544	30.824	0.072392	30.818	30.77	30.842	-0.0057564	66	52	1.579413	0.030024648	1.5778936	320.41812		6.0911255	0.0086339	0.00033497	-0.0016425	NaN	3.2116	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5926.4	+		3345	13602	1945	1979							-0.02198217253612711
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.8373310946	2	550.837331	1099.66011	0.94284	0.00051935	-1.7633	-0.00097128	-0.82043	-0.00045192	550.8360106959468	12.436	0.16791	12.436	12.388	12.556	0	1257	40	0.86339295	0.023948371	0.86339295	350.1559	0	9.712463						160	8	3	NaN	NaN	NaN	0.030545	1	12840	12840		58.398	13.233	1	20369			3346	2326	1946	1980	2639	2639					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.56064621859997	3	367.560646	1099.66011	1.2808	0.00047079	-1.9885	-0.0007309	-0.70769	-0.00026012	367.55962296167127	12.436	0.21595	12.436	12.388	12.604	0	1479	40	0.72651637	0.024141133	0.72651637	441.9618	0	14.685791						194	10	3	NaN	NaN	NaN	0.064504	1	12841	12841		30.925	2.6295	1	42018			3347	2326	1946	1980	2640	2640					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.56064621859997	3	367.560646	1099.66011	1.3255	0.00048721	-2.0671	-0.00075979	-0.74159	-0.00027258	367.55983103102795	12.654	0.2403	12.645	12.501	12.741	-0.0088415	1479	40	0.72651637	0.024141133	0.7249969	441.9618	0	14.685791						191	11	2	NaN	NaN	NaN	0.49672	1	12508	12508		8.9191	4.6089	1	39614			3348	2326	1946	1980	2641	2641					0.11426560574227551
EENKLVKKI	9	Unmodified	_EENKLVKKI_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.8373310946	2	550.837331	1099.66011	1.0452	0.00057573	-0.6577	-0.00036229	0.3875	0.00021345	550.8370798022167	12.678	0.28832	12.669	12.5	12.789	-0.00947	1254	37	0.8652351	0.022104979	0.86371565	350.903	0	8.964874						186	13	2	NaN	NaN	NaN	0.028404	1	12509	12509		61.199	20.242	1	24952			3349	2326	1946	1980	2642	2642					0.11426560574227551
EENNLELA	8	Unmodified	_EENNLELA_					0	0	0			REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4367170844998	1	931.436717	930.429441	1.244	0.0011587	-8.465	-0.0078847	-7.2211	-0.006726	931.4283970347421	30.873	0.1206	30.873	30.825	30.946	0	357	88	1.407258	0.05170989	1.407258	286.00833	0	10.509399						187	6	2	NaN	NaN	NaN	0.3042	1	6612	6612		41.785	0	1	19078	+		3350	12505	1947	1981	2643	2643					-0.03855692478441597
EENNLELA	8	Unmodified						0	0	0			REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	931.436717	930.429441	1.244	0.0011587	-8.465	-0.0078847	-7.2211	-0.006726	931.4283970347421	30.873	0.1206	30.873	30.825	30.946	0	357	88	1.407258	0.05170989	1.407258	286.00833		10.509399	0.0034287	0.0010086	0.00075972	NaN	41.785	187	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19078	+		3351	12505	1947	1981							-0.03855692478441597
EENNLELA	8	Unmodified						0	0	0			REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	931.436717	930.429441	1.0736	0.00099996	-10.369	-0.0096576	-9.295	-0.0086577	931.4280394388736	30.872	0.12069	30.866	30.818	30.939	-0.0057545	357	52	1.407258	0.03032887	1.4057386	286.00833		6.163971	-0.0034287	-0.00076434	-0.00075972	NaN	41.785	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16007	+		3352	12505	1947	1981							-0.03855692478441597
EENRQKLSL	9	Unmodified	_EENRQKLSL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.8040195935001	2	558.80402	1115.59349	1.6836	0.0009408	-11.003	-0.0061487	-9.3197	-0.0052079	558.79684423855	14.117	0.19214	14.117	14.069	14.261	0	1245	49	0.87076044	0.029466987	0.87076044	353.08148	0	11.948456						156	9	3	NaN	NaN	NaN	0.2345	1	13505	13505		23.118	6.2593	1	17915			3353	1231	1948	1982	2644	2644					0.04031325012351772
EEPDMESYL	9	Unmodified	_EEPDMESYL_					0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4452328603	1	1112.44523	1111.43796	1.6173	0.0017992	-2.5863	-0.0028771	-0.9689	-0.0010779	1112.4430114219826	30.535	0.16897	30.535	30.487	30.656	0	147	73	1.5316714	0.042497754	1.5316714	310.5535	0	8.616608						192	8	2	NaN	NaN	NaN	0.47587	1	13321	13321		10.605	4.3548	1	20563	+		3354	9978	1949	1983	2645	2645					-0.11330506624108239
EEPDMESYL	9	Unmodified						0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1112.44523	1111.43796	1.6173	0.0017992	-2.5863	-0.0028771	-0.9689	-0.0010779	1112.4430114219826	30.535	0.16897	30.535	30.487	30.656	0	147	73	1.5316714	0.042497754	1.5316714	310.5535		8.616608	0.015441	-0.00076674	-0.0001256	NaN	10.605	192	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20563	+		3355	9978	1949	1983							-0.11330506624108239
EEPDMESYL	9	Unmodified						0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1112.44523	1111.43796	0.86478	0.00096201	-1.1445	-0.0012731	-0.27968	-0.00031113	1112.4442604333417	30.51	0.1689	30.505	30.456	30.625	-0.0057545	144	61	1.533442	0.035414815	1.5319226	310.9125		7.180542	-0.015441	0.00083718	0.0001256	NaN	10.605	192	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21066	+		3356	9978	1949	1983							-0.11330506624108239
EEPGGGGC	8	Unmodified	_EEPGGGGC_					0	0	0		ENST00000590083.5_1_19:1229180-1230152:-|nuORF;ENSG00000099625|ENST00000650044|CBARP	ENST00000590083.5_1_19:1229180-1230152:-|nuORF	ENST00000590083.5_1_19:1229180-1230152:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2508305695001	1	705.250831	704.243554	1.8379	0.0012962	3.5669	0.0025156	5.4048	0.0038118	705.2516368716144	26.046	0.26548	26.046	26.046	26.312	0	723	139	1.1881942	0.08319986	1.1881942	242.61418	0	16.988358						758	12	3	NaN	NaN	NaN	0.84692	1	3289	3289		1.4396	0.19772	1	102530			3357	1159	1950	1984	2646	2646					-0.12039793198732696
EEPLSQLPE	9	Unmodified	_EEPLSQLPE_					0	0	0			REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	REV__ENST00000368902.1_1_1:151138565-151138990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5098820276	1	1041.50988	1040.50261	1.626	0.0016935	0.4993	0.00052002	2.1253	0.0022135	1041.5105719210296	21.272	0.072168	21.258	21.21	21.282	-0.014004	258	46	1.4660252	0.026664138	1.4645058	297.49197	0	5.4108276						62	4	2	NaN	NaN	NaN	0.16171	1	10010	10010		27.789	9.9898	1	5392.6	+		3358	11875	1951	1985	2647	2647					-0.01602563755795927
EEPLTTQQP	9	Unmodified	_EEPLTTQQP_					0	0	0		CON__Q03247	CON__Q03247	CON__Q03247	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5051310007	1	1042.50513	1041.49785	1.8326	0.0019105	5.0096	0.0052225	6.8422	0.007133	1042.508092541719	21.272	0.048159	21.272	21.248	21.296	0	258	31	1.4660252	0.017775178	1.4660252	297.48825	0	3.606964						36	3	2	NaN	NaN	NaN	0.45297	1	10268	10268		11.548	0	1	2024.9		+	3359	205	1952	1986	2648	2648					-0.021234478985661553
EEPTVAMAF	9	Unmodified	_EEPTVAMAF_					0	0	0		nc|ENSG00000134508|Q8TDN4-3|CABLES1;nc|ENSG00000134508|Q8TDN4-4|CABLES1;nc|ENSG00000134508|Q8TDN4-2|CABLES1;ENSG00000134508|ENST00000256925|CABLES1	nc|ENSG00000134508|Q8TDN4-3|CABLES1	nc|ENSG00000134508|Q8TDN4-3|CABLES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.4550096856	1	994.45501	993.447733	1.8786	0.0018682	0.84685	0.00084216	2.7255	0.0027104	994.458567265065	24.791	0.072392	24.779	24.755	24.827	-0.012394	303	49	1.4393384	0.028488636	1.437819	292.2575	0	5.7846375						72	4	2	NaN	NaN	NaN	0.29681	1	8165	8165		19.118	1.3193	1	5373.5			3360	2878	1953	1987	2649	2649					-0.0492527382807566
EEPTVAMAF	9	Unmodified						0	0	0		nc|ENSG00000134508|Q8TDN4-3|CABLES1;nc|ENSG00000134508|Q8TDN4-4|CABLES1;nc|ENSG00000134508|Q8TDN4-2|CABLES1;ENSG00000134508|ENST00000256925|CABLES1	nc|ENSG00000134508|Q8TDN4-3|CABLES1	nc|ENSG00000134508|Q8TDN4-3|CABLES1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	994.45501	993.447733	1.857	0.0018467	-0.040146	-3.9924E-05	1.8168	0.0018068	994.455856412548	24.791	0.072409	24.791	24.767	24.84	0	303	46	1.4393384	0.026709557	1.4393384	292.2575		5.42334	0.006283	-0.00034645	0.00075972	NaN	19.118	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7954.9			3361	2878	1953	1987							-0.0492527382807566
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8082393041501	2	553.808239	1105.60193	1.1558	0.0006401	-2.8775	-0.0015936	-1.7217	-0.00095349	553.8065330227387	14.381	0.11989	14.381	14.357	14.477	0	1248	49	0.8689189	0.029470205	0.8689189	352.37357	0	11.95105						127	6	3	NaN	NaN	NaN	0.2345	1	13095	13095		23.118	14.156	1	15245			3362	1027	1954	1988	2650	2650					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.54125169163336	3	369.541252	1105.60193	1.6452	0.00060797	-2.4569	-0.00090793	-0.81171	-0.00029996	369.54029352973123	14.404	0.071846	14.393	14.369	14.441	-0.011218	1482	43	0.72465914	0.026005268	0.7231397	440.8027	0	15.818726						69	4	2	NaN	NaN	NaN	0.31737	1	12734	12734		11.739	7.8108	1	7551.4			3363	1027	1954	1988	2651	2651					0.05334878928965736
EEPTVIKKY	9	Unmodified	_EEPTVIKKY_					0	0	0		ENST00000547000.1_1_12:101462478-101462640:+|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENST00000547000.1_1_12:101462478-101462640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8082393041501	2	553.808239	1105.60193	1.281	0.00070942	-0.75936	-0.00042054	0.52163	0.00028888	553.8081848657549	14.404	0.095798	14.393	14.369	14.465	-0.011218	1248	43	0.8689189	0.025780857	0.86739945	352.37357	0	10.454926						111	5	3	NaN	NaN	NaN	0.16939	1	12735	12735		27.296	15.248	1	11100			3364	1027	1954	1988	2652	2652					0.05334878928965736
EEQHRMLDQRM	11	Unmodified	_EEQHRMLDQRM_					0	0	0			REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	REV__ENST00000442352.1_1_13:19782657-19801502:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.56261514823325	3	491.562615	1471.66602	1.5133	0.0007439	4.9683	0.0024422	6.4817	0.0031861	491.5659324807375	20.381	0.072266	20.367	20.319	20.391	-0.014141	1374	43	0.791392	0.025906682	0.7898726	479.9208	0	15.71051						53	4	2	NaN	NaN	NaN	0.77059	1	19484	19484		0.63301	0	1	3881.7	+		3365	12196	1955	1989	2653	2653					-0.05095032248073039
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.2932877316999	2	596.293288	1190.57202	1.3427	0.00080067	1.3393	0.0007986	2.682	0.0015993	596.2929820858435	19.372	0.19195	19.372	19.3	19.492	0	1173	73	0.91489893	0.044095516	0.91489893	370.6937	0	17.866425						193	9	3	NaN	NaN	NaN	0.12328	1	16164	16164		32.453	20.714	1	19320			3366	1999	1956	1990	2654	2654					-0.015640600164033458
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2932877316999	2	596.293288	1190.57202	1.1113	0.00066266	-1.7157	-0.0010231	-0.60441	-0.00036041	596.2922212902067	19.442	0.1925	19.428	19.38	19.573	-0.014141	1176	61	0.9130621	0.03674233	0.91154265	369.94946	0	14.887054						194	9	3	NaN	NaN	NaN	0.18779	1	15550	15550		26.115	15.755	1	17882			3367	1999	1956	1990	2655	2655					-0.015640600164033458
EEQKNLHFF	9	Unmodified	_EEQKNLHFF_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.8646173099999	3	397.864617	1190.57202	1.5548	0.00061859	-1.3094	-0.00052098	0.24535	9.7615E-05	397.86411308032706	19.466	0.096214	19.452	19.404	19.5	-0.014141	1455	37	0.7413668	0.022263587	0.73984736	450.57004	0	13.530853						92	5	2	NaN	NaN	NaN	0.60063	1	15551	15551		2.8895	0.29002	1	8406.8			3368	1999	1956	1990	2656	2656					-0.015640600164033458
EEQLALQRR	9	Unmodified	_EEQLALQRR_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.81746131975	2	571.817461	1141.62037	1.8535	0.0010598	-1.6503	-0.00094367	0.20317	0.00011617	571.8181524727555	22.332	0.072355	22.332	22.308	22.38	0	1182	34	0.9093879	0.020211518	0.9093879	368.6417	0	8.193207						42	4	2	NaN	NaN	NaN	0.63698	1	14529	14529		3.9685	0	1	4058.8	+		3369	10483	1957	1991	2657	2657					0.05522433623514189
EEQNFVQKY	9	Unmodified	_EEQNFVQKY_					0	0	0		ENSG00000132514|ENST00000416562|CLEC10A;nc|ENSG00000132514|Q8IUN9-2|CLEC10A;nc|ENSG00000132514|Q8IUN9|CLEC10A	ENSG00000132514|ENST00000416562|CLEC10A	ENSG00000132514|ENST00000416562|CLEC10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.7827528351501	2	592.782753	1183.55095	1.3774	0.00081652	-2.8408	-0.001684	-1.4633	-0.00086745	592.7813317902306	16.778	0.14375	16.765	16.717	16.861	-0.013294	1212	37	0.8910048	0.0220716	0.88948536	361.03696	0	8.943451						118	7	3	NaN	NaN	NaN	0.10363	1	15345	15345		35.296	27.006	1	10640			3370	2769	1958	1992	2658	2658					-0.03348070115907831
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	CON__Q3SX28	CON__Q3SX28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.5628268655667	3	405.562827	1213.66665	1.3823	0.00056062	-1.2769	-0.00051788	0.10538	4.2738E-05	405.5619546996305	13.349	0.096097	13.349	13.325	13.421	0	1473	34	0.7302302	0.020424902	0.7302302	443.70508	0	12.410675						81	5	3	NaN	NaN	NaN	0.34693	1	16826	16826		25.694	20.794	1	8546.3		+	3371	217	1959	1993	2659	2659					0.06836453734968018
EEQQALQKKL	10	Unmodified	_EEQQALQKKL_					0	0	0		CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	CON__Q3SX28	CON__Q3SX28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.5628268655667	3	405.562827	1213.66665	1.1553	0.00046855	-0.92847	-0.00037655	0.22683	9.1996E-05	405.89717898095967	13.349	0.11997	13.339	13.315	13.435	-0.010098	1473	31	0.7302302	0.018567085	0.7287108	443.70508	0	11.281799						105	6	3	NaN	NaN	NaN	0.60686	1	16157	16157		15.311	5.0673	1	10508		+	3372	217	1959	1993	2660	2660					0.06836453734968018
EERAEQPLLR	10	Unmodified	_EERAEQPLLR_					0	0	0		ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	ENST00000361198.9_1_10:103874266-103874668:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.2263261809667	3	414.226326	1239.65715	1.2606	0.00052217	-1.3573	-0.00056222	-0.096691	-4.0052E-05	414.2259558398494	13.637	0.21576	13.627	13.579	13.795	-0.010098	1416	49	0.76547134	0.029649377	0.7639519	465.00894	0	18.011444						344	10	4	NaN	NaN	NaN	0.26393	1	16787	16787		19.904	1.3456	1	111260			3373	6602	1960	1994	2661	2661					0.04690685449418197
EERDAWVWD	9	Unmodified	_EERDAWVWD_					0	0	0		PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.2647272575	2	603.264727	1204.5149	1.8104	0.0010922	-1.0559	-0.00063696	0.75455	0.00045519	603.2637252360519	26.022	0.14481	26.022	25.95	26.094	0	1179	76	0.9112251	0.045915484	0.9112251	369.1562	0	18.601349						278	7	3	NaN	NaN	NaN	0.47587	1	16592	16592		10.605	0.99332	1	28509			3374	8097	1961	1995	2662	2662					-0.07917527292761406
EERDAWVWD	9	Unmodified						0	0	0		PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	603.264727	1204.5149	1.6865	0.0010174	-2.1551	-0.0013001	-0.46862	-0.0002827	603.2632851517047	26.022	0.21724	26.011	25.938	26.156	-0.011135	1179	82	0.9112251	0.049594104	0.90970564	369.1562		20.091614	-0.0056709	-0.00058045	-0.00075972	NaN	10.605	287	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27464			3375	8097	1961	1995							-0.07917527292761406
EERDGVRFSW	10	Unmodified	_EERDGVRFSW_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion;ENSG00000100934|ENST00000307712|SEC23A;SEC23B-ZCCHC7|2|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5387927620334	3	427.538793	1279.59455	0.96609	0.00041304	0.67395	0.00028814	1.64	0.00070118	427.53839024237914	20.477	0.14438	20.463	20.439	20.584	-0.014141	1461	46	0.7376554	0.027840078	0.73613596	447.95746	0	16.906494						105	7	2	NaN	NaN	NaN	0.25505	1	17594	17594		26.209	19.401	1	12331			3376	1314	1962	1996	2663	2663					-0.03406460618748497
EERSYNPFL	9	Unmodified	_EERSYNPFL_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.777470492	2	577.77747	1153.54039	1.1366	0.00065668	-3.9307	-0.0022711	-2.7942	-0.0016144	577.7760816852427	40.27	0.14424	40.276	40.228	40.372	0.0060463	1197	37	0.9001988	0.022057295	0.8986794	364.8717	0	8.940338						100	7	2	NaN	NaN	NaN	0.23112	1	14420	14420		23.334	1.4994	1	9194.4			3377	7941	1963	1997	2664	2664					-0.03024052770342678
EERSYNPFL	9	Unmodified						0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.77747	1153.54039	0.93841	0.00054219	-4.8663	-0.0028116	-3.9279	-0.0022694	577.7755375439649	40.296	0.14433	40.296	40.248	40.392	0	1200	37	0.89836043	0.022062063	0.89836043	364.12656		8.942261	0.010022	-0.00054023	-0.00015948	NaN	23.334	109	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8109.1			3378	7941	1963	1997							-0.03024052770342678
EESAVTVMF	9	Oxidation (M)	_EESAVTVM(Oxidation (M))F_		EESAVTVM(1)F		EESAVTVM(81)F	0	0	1		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.4604889940001	1	1028.46049	1027.45321	1.6114	0.0016573	-1.0777	-0.0011083	0.53375	0.00054894	1028.458722405524	24.574	0.0965	24.574	24.55	24.647	0	261	52	1.4642475	0.030225873	1.4642475	297.1806	0	6.1345825						94	5	2	NaN	NaN	NaN	0.014046	1	9650	9650		80.639	39.179	1	8244.6			3379	518	1964	1998	2665	2665		47			-0.059415950362335934
EESAVTVMF	9	Oxidation (M)	_EESAVTVM(Oxidation (M))F_		EESAVTVM(1)F		EESAVTVM(42)F	0	0	1		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.4604889940001	1	1028.46049	1027.45321	1.5268	0.0015702	2.0661	0.0021249	3.5929	0.0036951	1028.4621429369665	24.598	0.048292	24.586	24.562	24.61	-0.012394	261	49	1.4642475	0.028446317	1.462728	297.18057	0	5.7733765						78	3	2	NaN	NaN	NaN	0.062072	1	9458	9458		41.785	18.45	1	6651.4			3380	518	1964	1998	2666	2666		47			-0.059415950362335934
EESDLSRQY	9	Unmodified	_EESDLSRQY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.75419236095	2	563.754192	1125.49383	1.5186	0.00085614	-0.9293	-0.0005239	0.58934	0.00033224	563.7538801344664	14.621	0.096043	14.621	14.597	14.693	0	1269	34	0.8560222	0.020272791	0.8560222	347.068	0	8.219452						100	5	3	NaN	NaN	NaN	0.030696	1	13888	13888		58.2	35.082	1	11897			3381	866	1965	1999	2667	2667					-0.06389537392283273
EESETYQEQ	9	Unmodified	_EESETYQEQ_					0	0	0			REV__KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	REV__KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7278402247	2	571.72784	1141.44113	1.7307	0.00098951	-2.0783	-0.0011882	-0.3476	-0.00019873	572.2279726106253	25.732	0.24133	25.721	25.648	25.89	-0.0116	1215	64	0.8891654	0.038627446	0.88764596	360.44473	0	15.658539						251	11	3	NaN	NaN	NaN	0.39244	1	14016	14016		14.042	0.57854	1	32813	+		3382	8675	1966	2000	2668	2668					-0.12393540245761869
EESFFILKY	9	Unmodified	_EESFFILKY_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.3027897855001	2	588.30279	1174.59103	1.0805	0.00063565	-1.5775	-0.00092806	-0.49705	-0.00029241	588.3014987302901	28.604	0.24128	28.596	28.451	28.692	-0.0083504	1188	106	0.90571284	0.06430954	0.9041934	367.02893	0	26.060638						502	11	4	NaN	NaN	NaN	0.059222	1	15076	15076		42.995	9.5695	1	75909			3383	5351	1967	2001	2669	2669					0.010714765546708804
EESFFLYLK	9	Unmodified	_EESFFLYLK_					0	0	0			REV__ENST00000550937.5_1_12:69924712-69951593:+|nuORF	REV__ENST00000550937.5_1_12:69924712-69951593:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3027897855	2	588.30279	1174.59103	1.7753	0.0010444	-2.6159	-0.0015389	-0.84057	-0.00049451	588.3011996933209	28.581	0.14477	28.581	28.556	28.701	0	1188	94	0.90571284	0.05695367	0.90571284	367.02893	0	23.079803						248	7	2	NaN	NaN	NaN	0.011693	1	15637	15637		87.778	3.5455	1	57271	+		3384	12741	1968	2002	2670	2670					0.01071476554648143
EESFFLYLK	9	Unmodified						0	0	0			REV__ENST00000550937.5_1_12:69924712-69951593:+|nuORF	REV__ENST00000550937.5_1_12:69924712-69951593:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	588.30279	1174.59103	1.7753	0.0010444	-2.6159	-0.0015389	-0.84057	-0.00049451	588.3011996933209	28.581	0.14477	28.581	28.556	28.701	0	1188	94	0.90571284	0.05695367	0.90571284	367.02893		23.079803	-0.0075194	-0.00050957	0.00075972	NaN	87.778	248	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57271	+		3385	12741	1968	2002							0.01071476554648143
EESHEPAATQP	11	Unmodified	_EESHEPAATQP_					0	0	0			REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.26492422275	2	598.264924	1194.5153	1.2614	0.00075465	5.6409	0.0033748	6.9023	0.0041294	598.7706065868189	27.712	0.14478	27.712	27.688	27.833	0	1185	76	0.90755045	0.04595518	0.90755045	367.70236	0	18.619171						175	7	2	NaN	NaN	NaN	0.67772	1	16282	16282		8.9191	2.0559	1	22387	+		3386	12400	1969	2003	2671	2671					-0.0741815236358434
EESHEPAATQP	11	Unmodified						0	0	0			REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.264924	1194.5153	1.2614	0.00075465	5.6409	0.0033748	6.9023	0.0041294	598.7706065868189	27.712	0.14478	27.712	27.688	27.833	0	1185	76	0.90755045	0.04595518	0.90755045	367.70236		18.619171	-0.018958	-0.0019467	-0.0010776	NaN	8.9191	175	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22387	+		3387	12400	1969	2003							-0.0741815236358434
EESHEPAATQP	11	Unmodified						0	0	0			REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.264924	1194.5153	0.68105	0.00040745	8.2504	0.0049359	8.9314	0.0053434	598.2699305357856	27.759	0.12066	27.75	27.726	27.846	-0.009552	1179	64	0.9112251	0.03859818	0.90970564	369.19116		15.638428	0.018958	0.0011756	0.0010776	NaN	8.9191	180	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23279	+		3388	12400	1969	2003							-0.0741815236358434
EESICFNRTF	10	Unmodified	_EESICFNRTF_					0	0	0		PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant;nc|ENSG00000231213|A0PG75-2|PLSCR5;ENSG00000231213|ENST00000443512|PLSCR5	PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant	PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2820627309001	2	623.282063	1244.54957	1.3115	0.00081741	2.9909	0.0018642	4.3024	0.0026816	623.2841472026114	24.647	0.28942	24.647	24.502	24.791	0	1152	76	0.92775106	0.04589075	0.92775106	375.71423	0	18.584534						266	13	2	NaN	NaN	NaN	0.69669	1	17623	17623		8.2775	0.032722	1	41329			3389	6035	1970	2004	2672	2672					-0.06292027476320072
EESRSKGPV	9	Unmodified	_EESRSKGPV_					0	0	0			REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.75653808465006	2	494.756538	987.498523	1.8821	0.00093117	-2.4472	-0.0012108	-0.56513	-0.0002796	494.7558411413675	17.165	0.095993	17.165	17.165	17.261	0	1338	34	0.81357855	0.020327687	0.81357855	330.4167	0	8.255646						71	5	2	NaN	NaN	NaN	0.51576	1	8123	8123		8.962	1.3744	1	6044.2	+		3390	11357	1971	2005	2673	2673					0.004273915411545204
EESRSKGPV	9	Unmodified						0	0	0			REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	REV__ENST00000476890.1_1_3:185813076-185826774:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.756538	987.498523	1.8821	0.00093117	-2.4472	-0.0012108	-0.56513	-0.0002796	494.7558411413675	17.165	0.095993	17.165	17.165	17.261	0	1338	34	0.81357855	0.020327687	0.81357855	330.4167		8.255646	-0.015476	-0.0012582	0.0016836	NaN	8.962	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6044.2	+		3391	11357	1971	2005							0.004273915411545204
EESSFATLF	9	Unmodified	_EESSFATLF_					0	0	0		ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF;nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	ENST00000550898.1_1_12:75900510-75905383:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.4727682398	1	1030.47277	1029.46549	1.5153	0.0015614	-0.1411	-0.0001454	1.3742	0.001416	1030.4710822128156	30.679	0.12066	30.673	30.625	30.746	-0.0057545	210	43	1.4944444	0.024848342	1.4929249	303.30145	0	5.04303						72	6	2	NaN	NaN	NaN	0.56671	1	9546	9546		6.8632	1.3974	1	4630.7			3392	1817	1972	2006	2674	2674					-0.048062353015666304
EETETVTKSY	10	Unmodified	_EETETVTKSY_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.77733310625	2	593.777333	1185.54011	1.8971	0.0011264	-1.5326	-0.00091001	0.3645	0.00021643	593.7763550288666	14.069	0.36029	14.069	14.021	14.381	0	1224	52	0.883646	0.03127992	0.883646	358.04822	0	12.674438						577	16	5	NaN	NaN	NaN	1.3399E-08	1	16018	16018		134.11	93.954	1	216780			3393	2342	1973	2007	2675	2675					-0.045235172808588686
EETETVTKSY	10	Unmodified	_EETETVTKSY_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.77733310625	2	593.777333	1185.54011	1.3278	0.00078842	-0.27441	-0.00016294	1.0534	0.00062549	593.7772061720527	14.069	0.28758	14.058	14.01	14.298	-0.010672	1224	55	0.883646	0.033121705	0.88212657	358.04822	0	13.420746						520	13	5	NaN	NaN	NaN	1.0050000000000001E-19	1	15408	15408		165.13	109.54	1	208170			3394	2342	1973	2007	2676	2676					-0.045235172808588686
EETRTSDNGL	10	Unmodified	_EETRTSDNGL_					0	0	0			REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.5071582826333	3	374.507158	1120.49965	0.93314	0.00034947	-5.4023	-0.0020232	-4.4692	-0.0016737	374.505152039603	30.873	0.096476	30.873	30.849	30.946	0	1515	46	0.7042165	0.027894557	0.7042165	428.29767	0	16.96518						95	5	2	NaN	NaN	NaN	0.74854	1	13693	13693		2.239	0	1	9009.6	+		3395	10670	1974	2008	2677	2677					-0.05578438880615977
EETSLLNGNS	10	Unmodified	_EETSLLNGNS_					0	0	0			REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2487428423	2	532.248743	1062.48293	1.3261	0.00070581	7.4165	0.0039474	8.7426	0.0046532	532.252690860938	16.491	0.11978	16.478	16.454	16.574	-0.012995	1296	61	0.8394264	0.036889493	0.83790696	340.58344	0	14.967316						175	6	3	NaN	NaN	NaN	0.61246	1	10959	10959		14.042	2.4931	1	27592	+		3396	13613	1975	2009	2678	2678					-0.045809397665834695
EEVDVTPTF	9	Unmodified	_EEVDVTPTF_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4833329260998	1	1036.48333	1035.47606	1.7381	0.0018015	-0.24831	-0.00025737	1.4898	0.0015441	1036.4826795518986	24.984	0.072378	24.972	24.948	25.02	-0.012392	228	61	1.4837929	0.035512567	1.4822735	301.11658	0	7.2068176						71	4	2	NaN	NaN	NaN	0.18779	1	9790	9790		26.115	14.066	1	5617.4			3397	3331	1976	2010	2679	2679					-0.040262526471451565
EEVDVTPTF	9	Unmodified						0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575957.1_1_17:78115565-78120760:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1036.48333	1035.47606	1.6205	0.0016796	2.1366	0.0022146	3.7571	0.0038942	1036.486165479827	24.985	0.072403	24.985	24.96	25.033	0	228	109	1.4837929	0.06388891	1.4837929	301.11658		12.965424	0.0063063	0.0016662	0.00075972	NaN	26.115	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9210.2			3398	3331	1976	2010							-0.040262526471451565
EEVFETIIHSY	11	Unmodified	_EEVFETIIHSY_					0	0	0		nc|ENSG00000105122|Q86YV0-2|RASAL3;ENSG00000105122|ENST00000343625|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.8298999930001	2	683.8299	1365.64525	1.6372	0.0011196	-2.297	-0.0015708	-0.65979	-0.00045119	683.8281174390813	27.615	0.12067	27.615	27.543	27.664	0	1074	52	0.9754029	0.03112173	0.9754029	394.6274	0	12.591187						123	6	3	NaN	NaN	NaN	0.022256	1	19750	19750		60.984	46.559	1	11836			3399	1514	1977	2011	2680	2680					-0.022949760844085176
EEVFETIIHSY	11	Unmodified						0	0	0		nc|ENSG00000105122|Q86YV0-2|RASAL3;ENSG00000105122|ENST00000343625|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	683.8299	1365.64525	1.3289	0.00090877	-0.97382	-0.00066592	0.35512	0.00024284	683.8300966107024	27.639	0.09651	27.629	27.581	27.677	-0.009552	1077	43	0.9735726	0.025625527	0.9720532	393.8869		10.367523	0.0068869	0.00093858	-0.0016749	NaN	60.984	106	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10573			3400	1514	1977	2011							-0.022949760844085176
EEVGGRVQ	8	Unmodified	_EEVGGRVQ_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.2248738155	2	437.224874	872.435195	0.82357	0.00036009	-3.1889	-0.0013943	-2.3653	-0.0010342	437.2229700222769	30.632	0.12069	30.632	30.584	30.704	0	1407	37	0.77102906	0.02222979	0.77102906	313.70285	0	9.044464						71	6	2	NaN	NaN	NaN	0.84455	1	5695	5695		2.7852	0	1	5262.4	+		3401	9292	1978	2012	2681	2681					-0.006125491760940349
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3253161416001	2	659.325316	1316.63608	1.9391	0.0012785	-1.9777	-0.0013039	-0.038573	-2.5432E-05	659.3239290050362	13.589	0.16813	13.589	13.565	13.733	0	1146	49	0.93142134	0.029362142	0.93142134	376.97394	0	11.883759						137	8	3	NaN	NaN	NaN	0.41241	1	19056	19056		23.086	13.474	1	16233			3402	5495;5928	1979	2013	2682	2682					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.8859695832667	3	439.88597	1316.63608	1.9412	0.00085392	-1.9082	-0.00083938	0.033058	1.4542E-05	439.88496627412627	13.589	0.2402	13.589	13.565	13.805	0	1458	49	0.7395112	0.02969122	0.7395112	448.94974	0	18.025238						423	11	5	NaN	NaN	NaN	0.0019419	1	19057	19057		80.4	52.164	1	130440			3403	5495;5928	1979	2013	2683	2683					-0.009573246500849564
EEVHDLERKY	10	Unmodified	_EEVHDLERKY_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.8859695832667	3	439.88597	1316.63608	1.2314	0.00054167	-1.0295	-0.00045285	0.20191	8.8817E-05	439.8855080165851	13.613	0.26369	13.603	13.555	13.819	-0.010098	1458	52	0.7395112	0.03154862	0.73799175	448.94974	0	19.152863						381	12	4	NaN	NaN	NaN	0.28676	1	18214	18214		19.32	7.7588	1	132160			3404	5495;5928	1979	2013	2684	2684					-0.009573246500849564
EEVIGRFW	8	Unmodified	_EEVIGRFW_					0	0	0		ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-3|RASGRP4;nc|ENSG00000171777|Q8TDF6-6|RASGRP4;nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-5|RASGRP4;nc|ENSG00000171777|Q8TDF6-9|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2665416649501	2	518.266542	1034.51853	2.1207	0.0010991	-2.4543	-0.001272	-0.33359	-0.00017289	518.2655766669902	25.612	0.1448	25.612	25.588	25.732	0	1293	49	0.84127116	0.02951163	0.84127116	341.45	0	11.978027						157	7	3	NaN	NaN	NaN	0.67593	1	9974	9974		20.555	3.9713	1	16381			3405	7736	1980	2014	2685	2685					0.002651872717478909
EEVIGRFW	8	Unmodified						0	0	0		ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-3|RASGRP4;nc|ENSG00000171777|Q8TDF6-6|RASGRP4;nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-5|RASGRP4;nc|ENSG00000171777|Q8TDF6-9|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.266542	1034.51853	1.889	0.00097899	-2.1002	-0.0010885	-0.21128	-0.0001095	518.265734578238	25.636	0.14471	25.624	25.576	25.721	-0.0116	1293	46	0.84127116	0.027671635	0.8397517	341.45		11.231201	0.0061462	0.00016075	-0.00075972	NaN	20.555	130	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15392			3406	7736	1980	2014							0.002651872717478909
EEVKLIKKM	9	Unmodified	_EEVKLIKKM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.22649860493334	3	373.226499	1116.65767	1.7316	0.0006463	-2.4086	-0.00089894	-0.67693	-0.00025265	373.2256211076843	14.165	0.096107	14.165	14.141	14.237	0	1479	37	0.72651637	0.022285342	0.72651637	441.87866	0	13.554291						67	5	2	NaN	NaN	NaN	0.34922	1	13553	13553		15.822	5.4618	1	6166.3			3407	999	1981	2015	2686	2686					0.10400388844914232
EEVLIPDQKY	10	Unmodified	_EEVLIPDQKY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3217108201501	2	617.321711	1232.62887	0.91911	0.00056738	-1.3839	-0.00085432	-0.4648	-0.00028693	617.320652167193	20.935	0.14436	20.935	20.887	21.031	0	1194	61	0.902037	0.036750257	0.902037	365.3395	0	14.88446						183	7	3	NaN	NaN	NaN	0.034303	1	17345	17345		77.761	43.307	1	26644			3408	332	1982	2016	2687	2687					0.021859427494746342
EEVLIPDQKY	10	Unmodified	_EEVLIPDQKY_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3217108201501	2	617.321711	1232.62887	0.47049	0.00029044	-1.6774	-0.0010355	-1.2069	-0.00074505	617.3210327770763	20.935	0.16852	20.921	20.897	21.065	-0.014088	1194	64	0.902037	0.038585663	0.9005176	365.3395	0	15.627838						236	8	4	NaN	NaN	NaN	0.0036708	1	16619	16619		95.291	55.137	1	28690			3409	332	1982	2016	2688	2688					0.021859427494746342
EEVWHSKWYD	10	Unmodified	_EEVWHSKWYD_					0	0	0		nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2069316540001	3	460.206932	1377.59897	1.2451	0.00057302	-8.9	-0.0040958	-7.6548	-0.0035228	460.5370071491956	19.972	0.14425	19.972	19.924	20.069	0	1416	46	0.76547134	0.027791798	0.76547134	464.49655	0	16.86438						207	7	4	NaN	NaN	NaN	0.66626	1	19871	19871		5.6972	0	1	42785			3410	3670	1983	2017	2689	2689					-0.07472996195838277
EEWLPRELW	9	Unmodified	_EEWLPRELW_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.316762828	2	629.316763	1256.61897	1.4582	0.00091769	-3.3066	-0.0020809	-1.8484	-0.0011632	629.8166438734856	29.063	0.19306	29.063	28.967	29.16	0	1143	85	0.9332562	0.051383734	0.9332562	377.90384	0	20.806854						398	9	4	NaN	NaN	NaN	0.40649	1	17928	17928		13.463	6.5998	1	29081			3411	678	1984	2018	2690	2690					0.0009279953474106151
EEWVGHVTQ	9	Unmodified	_EEWVGHVTQ_					0	0	0			REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7565380846501	2	542.756538	1083.49852	1.2026	0.00065269	-8.9496	-0.0048574	-7.747	-0.0042048	543.2534535996851	26.601	0.0965	26.59	26.566	26.663	-0.010645	1269	58	0.8560222	0.03502804	0.85450274	347.23077	0	14.208496						199	5	5	NaN	NaN	NaN	0.47587	1	11803	11803		10.605	0.36125	1	15760	+		3412	12644	1985	2019	2691	2691					-0.0398860845884883
EEYEPTEEY	9	Unmodified	_EEYEPTEEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1188.4579060366	1	1188.45791	1187.45063	1.8199	0.0021629	-2.9294	-0.0034815	-1.1095	-0.0013186	1188.453163134133	35.096	0.096546	35.096	35.072	35.168	0	114	40	1.5511382	0.022991657	1.5511382	314.25336	0	4.6579895						74	5	2	NaN	NaN	NaN	0.67989	1	16069	16069		0.92586	0	1	5743.7			3413	3883	1986	2020	2692	2692					-0.13559771960217404
EEYEPTEEY	9	Unmodified						0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1188.45791	1187.45063	2.1337	0.0025358	-1.3993	-0.001663	0.73446	0.00087287	1188.4574346147099	35.094	0.048252	35.094	35.07	35.119	-4.5776E-05	114	34	1.5511382	0.01945436	1.5496187	314.25336		3.9413757	-0.00073062	0.00067811	-0.00075972	NaN	0.92586	64	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4182.8			3414	3883	1986	2020							-0.13559771960217404
EFAIDLPDW	9	Unmodified	_EFAIDLPDW_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5200527834	1	1105.52005	1104.51278	0.62914	0.00069552	-3.168	-0.0035022	-2.5388	-0.0028067	1105.5207678680583	31.669	0.1448	31.664	31.592	31.737	-0.0044155	87	112	1.5670487	0.0654099	1.5655292	317.75085	0	13.263214						368	7	3	NaN	NaN	NaN	0.23112	1	12684	12684		23.334	5.5355	1	37056	+		3415	8465	1987	2021	2693	2693					-0.03529956030570247
EFAIDLPDW	9	Unmodified						0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1105.52005	1104.51278	1.1264	0.0012452	-3.8365	-0.0042413	-2.7102	-0.0029961	1106.5178839869968	31.67	0.14482	31.67	31.621	31.766	0	90	118	1.5652816	0.06894565	1.5652816	317.39255		13.980103	0.0027533	-0.00034983	-0.00012382	NaN	23.334	324	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34246	+		3416	8465	1987	2021							-0.03529956030570247
EFAIDLPDW	9	Unmodified						0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1105.52005	1104.51278	0.62914	0.00069552	-3.168	-0.0035022	-2.5388	-0.0028067	1105.5207678680583	31.669	0.1448	31.664	31.592	31.737	-0.0044155	87	112	1.5670487	0.0654099	1.5655292	317.75085		13.263214	-0.0027533	0.00038927	0.00012382	NaN	23.334	368	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37056	+		3417	8465	1987	2021							-0.03529956030570247
EFDAVLADF	9	Unmodified	_EFDAVLADF_					0	0	0		nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4778536176998	1	1026.47785	1025.47058	1.8639	0.0019133	2.2064	0.0022648	4.0703	0.0041781	1026.4797389786643	32.394	0.2654	32.394	32.345	32.611	0	204	157	1.4979934	0.092225194	1.4979934	304.03738	0	18.718323						547	12	4	NaN	NaN	NaN	0.0094682	1	9592	9592		93.472	59.033	1	87313			3418	1389	1988	2022	2694	2694					-0.0411393143897385
EFDAVLADF	9	Unmodified	_EFDAVLADF_					0	0	0		nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	nc|ENSG00000102760|Q9H4X1-2|RGCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4778536176998	1	1026.47785	1025.47058	1.0929	0.0011218	1.359	0.001395	2.4518	0.0025168	1026.4802160708994	32.393	0.19312	32.389	32.341	32.534	-0.0037613	201	142	1.4997677	0.083308816	1.4982482	304.39746	0	16.90863						497	9	4	NaN	NaN	NaN	0.043119	1	9404	9404		49.833	26.498	1	82540			3419	1389	1988	2022	2695	2695					-0.0411393143897385
EFDHIDSFY	9	Unmodified	_EFDHIDSFY_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.74837870155	2	586.748379	1171.4822	0.73494	0.00043122	5.8013	0.0034039	6.5362	0.0038351	586.7521288752964	31.669	0.1448	31.664	31.592	31.737	-0.0044155	1206	43	0.894683	0.025741875	0.89316356	362.57037	0	10.431885						83	7	2	NaN	NaN	NaN	0.61413	1	14981	14981		4.9097	0	1	7013.6	+		3420	11103	1989	2023	2696	2696					-0.09667734415620544
EFDSGLIVI	9	Unmodified	_EFDSGLIVI_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5298891882002	1	992.529889	991.522613	1.462	0.0014511	2.8715	0.0028501	4.3335	0.0043011	992.533044334427	28.387	0.1448	28.378	28.281	28.426	-0.0089779	219	127	1.4891195	0.07460034	1.4876001	302.37357	0	15.14798						322	7	2	NaN	NaN	NaN	0.043119	1	8113	8113		49.833	8.0484	1	70113	+		3421	10660	1990	2024	2697	2697					0.026512319748235313
EFDSGLIVI	9	Unmodified						0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.529889	991.522613	2.2355	0.0022188	2.0309	0.0020157	4.2664	0.0042345	992.5322740564809	28.388	0.048248	28.388	28.363	28.412	0	219	130	1.4891195	0.076372504	1.4891195	302.37357		15.507843	0.0048421	-0.00037991	0.00075972	NaN	49.833	319	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62620	+		3422	10660	1990	2024							0.026512319748235313
EFDSGLIVI	9	Unmodified						0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.529889	991.522613	1.462	0.0014511	2.8715	0.0028501	4.3335	0.0043011	992.533044334427	28.387	0.1448	28.378	28.281	28.426	-0.0089779	219	127	1.4891195	0.07460034	1.4876001	302.37357		15.14798	-0.0048421	0.00045443	-0.00075972	NaN	49.833	322	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70113	+		3423	10660	1990	2024							0.026512319748235313
EFESVYGCLV	10	Unmodified	_EFESVYGCLV_					0	0	0			REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-3|RMDN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1145.5183382239	1	1145.51834	1144.51106	1.7094	0.0019582	-10.569	-0.012108	-8.8601	-0.010149	1145.505379121535	30.341	0.19303	30.335	30.287	30.48	-0.0064106	81	61	1.5705823	0.03533244	1.5690628	318.33	0	7.1612854						271	9	3	NaN	NaN	NaN	0.67523	1	14121	14121		9.746	0.78402	1	25697	+		3424	9202	1991	2025	2698	2698					-0.05541333110841151
EFFCVVMWRF	10	Unmodified	_EFFCVVMWRF_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.31993668115	2	682.319937	1362.62532	1.8436	0.0012579	-8.4018	-0.0057327	-6.5582	-0.0044748	682.3140342955012	16.206	0.21609	16.206	16.182	16.398	0	1116	43	0.94976085	0.025661409	0.94976085	384.26175	0	10.382294						192	10	3	NaN	NaN	NaN	0.65442	1	19717	19717		11.17	0.20522	1	29927			3425	4864	1992	2026	2699	2699					-0.04148721829733404
EFFSDSGELVQ	11	Unmodified	_EFFSDSGELVQ_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2853253138501	2	629.285325	1256.5561	1.6646	0.0010475	4.8469	0.0030501	6.5115	0.0040976	629.2889975264341	15.558	0.21613	15.558	15.51	15.726	0	1161	40	0.9222442	0.02386576	0.9222442	373.44492	0	9.663971						214	10	4	NaN	NaN	NaN	0.73717	1	17926	17926		5.0169	0.60378	1	25620			3426	2533	1993	2027	2700	2700					-0.06191811043936468
EFFSDSGELVQ	11	Unmodified						0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	629.285325	1256.5561	2.5445	0.0016012	5.2449	0.0033006	7.7894	0.0049018	629.2894700549524	15.7	0.048029	15.687	15.663	15.711	-0.012612	1161	31	0.9222442	0.018359244	0.92072475	373.44492		7.4342346	0.064666	0.00042842	-0.00075972	NaN	5.0169	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2885			3427	2533	1993	2027							-0.06191811043936468
EFGGHGGHSDT	11	Unmodified	_EFGGHGGHSDT_					0	0	0			REV__sp|P03225|BDLF2_EBVB9ProteinBDLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BDLF2PE=1SV=1	REV__sp|P03225|BDLF2_EBVB9ProteinBDLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BDLF2PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7232265835501	2	550.723227	1099.4319	0.87597	0.00048242	0.67179	0.00036997	1.5478	0.00085239	550.723227962869	35.795	0.072334	35.795	35.771	35.844	0	1290	46	0.84311575	0.027665615	0.84311575	341.9332	0	11.220062						82	4	2	NaN	NaN	NaN	0.76488	1	12807	12807		2.8895	0.42796	1	7388.7	+		3428	13331	1994	2028	2701	2701					-0.11383844020747347
EFGGHGGHSDT	11	Unmodified						0	0	0			REV__sp|P03225|BDLF2_EBVB9ProteinBDLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BDLF2PE=1SV=1	REV__sp|P03225|BDLF2_EBVB9ProteinBDLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BDLF2PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.723227	1099.4319	0.87597	0.00048242	0.67179	0.00036997	1.5478	0.00085239	550.723227962869	35.795	0.072334	35.795	35.771	35.844	0	1290	46	0.84311575	0.027665615	0.84311575	341.9332		11.220062	0.00050481	0.0013077	0.001682	NaN	2.8895	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7388.7	+		3429	13331	1994	2028							-0.11383844020747347
EFGLSGVGLF	10	Unmodified	_EFGLSGVGLF_					0	0	0			REV__ENST00000395468.8_1_14:55534598-55534688:+|nuORF	REV__ENST00000395468.8_1_14:55534598-55534688:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2687500029001	2	513.26875	1024.52295	2.173	0.0011153	1.0254	0.0005263	3.1984	0.0016416	513.2697266066162	22.163	0.024145	22.163	22.163	22.187	0	1323	34	0.8228144	0.020314455	0.8228144	334.00165	0	8.246185						35	2	2	NaN	NaN	NaN	0.64158	1	9559	9559		12.049	0	1	3289.7	+		3430	12007	1995	2029	2702	2702					0.011666516946661432
EFGNLTPEQL	10	Unmodified	_EFGNLTPEQL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2851283486	2	574.285128	1146.5557	1.0533	0.00060487	-10.32	-0.0059267	-9.267	-0.0053219	574.78093903719	42.147	0.12	42.147	42.075	42.195	0	1221	34	0.885486	0.02023995	0.885486	358.9341	0	8.204315						127	6	3	NaN	NaN	NaN	0.47445	1	14682	14682		20.513	2.5436	1	8998.6			3431	428	1996	2030	2703	2703					-0.011711859731576624
EFGQVLKD	8	Unmodified	_EFGQVLKD_					0	0	0		nc|ENSG00000186976|Q5THR3-3|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6	nc|ENSG00000186976|Q5THR3-3|EFCAB6	nc|ENSG00000186976|Q5THR3-3|EFCAB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.4832733466001	1	935.483273	934.475997	1.3686	0.0012803	7.8529	0.0073462	9.2215	0.0086266	935.490986237934	27.204	0.14478	27.194	27.17	27.315	-0.010126	303	121	1.4393384	0.0712899	1.437819	292.50974	0	14.487915						237	7	3	NaN	NaN	NaN	0.6053	1	6575	6575		24.961	1.6266	1	26946			3432	5491	1997	2031	2704	2704					0.006137921435197313
EFGTAKGG	8	Unmodified	_EFGTAKGG_					0	0	0			REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	REV__tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.3729946157001	1	766.372995	765.365718	1.2746	0.00097684	0.11069	8.4833E-05	1.3853	0.0010617	766.3735471687494	20.766	0.072304	20.752	20.704	20.776	-0.014086	576	112	1.2765218	0.06651831	1.2750024	260.2522	0	13.561523						143	4	2	NaN	NaN	NaN	0.82212	1	4215	4215		6.2502	0	1	12886	+		3433	13630	1998	2032	2705	2705					-0.026350081248438073
EFGTCGVL	8	Unmodified	_EFGTCGVL_					0	0	0			REV__tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	REV__tr|U7SPW7|U7SPW7_FUSNUChemotaxisproteinMotBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01670PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.1941964638	2	413.194196	824.37384	0.97906	0.00040454	-3.7071	-0.0015317	-2.728	-0.0011272	413.19283160528835	31.789	0.48271	31.785	31.495	31.978	-0.0044174	1428	112	0.7580582	0.068516016	0.75653875	308.70374	0	27.901764						1546	21	4	NaN	NaN	NaN	0.82797	1	4962	4962		5.4659	0	1	468250	+		3434	13461	1999	2033	2706	2706					-0.0453719719973833
EFHSPNDIDST	11	Unmodified	_EFHSPNDIDST_					0	0	0			REV__nc|ENSG00000122484|Q8IXW5-2|RPAP2	REV__nc|ENSG00000122484|Q8IXW5-2|RPAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.18256319946664	3	421.182563	1260.52586	2.1128	0.00088987	-4.1749	-0.0017584	-2.0621	-0.00086853	421.5154480328524	27.929	0.048264	27.929	27.929	27.977	0	1491	28	0.7190863	0.016722202	0.7190863	436.75143	0	10.156555						27	3	2	NaN	NaN	NaN	0.76251	1	18000	18000		3.3044	0.84329	1	1467.9	+		3435	9344	2000	2034	2707	2707					-0.09398169709129434
EFILEQMRL	9	Unmodified	_EFILEQMRL_					0	0	0		ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	ENST00000584289.5_1_17:65341859-65362635:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.8155414075001	2	589.815541	1177.61653	1.0138	0.00059796	0.012576	7.4176E-06	1.0264	0.00060538	589.814235838813	31.815	0.16895	31.815	31.766	31.935	0	1158	67	0.92408	0.040390372	0.92408	374.46085	0	16.367218						178	8	3	NaN	NaN	NaN	0.54912	1	15754	15754		7.5876	0.60324	1	22303			3436	5687	2001	2035	2708	2708					0.03482627805442462
EFKDIELQH	9	Unmodified	_EFKDIELQH_					0	0	0			REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7931205562	2	579.793121	1157.57169	1.1177	0.00064803	2.2574	0.0013088	3.3751	0.0019569	579.7940868313061	32.73	0.28959	32.727	32.631	32.92	-0.0031052	1200	109	0.89836043	0.06615049	0.896841	364.11157	0	26.811249						453	13	3	NaN	NaN	NaN	0.16939	1	14567	14567		27.296	2.896	1	61311	+		3437	9489	2002	2036	2709	2709					-0.0007947973624595761
EFKDIELQH	9	Unmodified						0	0	0			REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	579.793121	1157.57169	1.1177	0.00064803	2.2574	0.0013088	3.3751	0.0019569	579.7940868313061	32.73	0.28959	32.727	32.631	32.92	-0.0031052	1200	109	0.89836043	0.06615049	0.896841	364.11157		26.811249	-0.0020855	0.00064584	0.00015958	NaN	27.296	453	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61311	+		3438	9489	2002	2036							-0.0007947973624595761
EFLGDAVVE	9	Unmodified	_EFLGDAVVE_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4778536177	1	978.477854	977.470577	1.8707	0.0018304	1.9324	0.0018909	3.8031	0.0037213	978.4805459240063	21.272	0.096245	21.258	21.21	21.306	-0.014004	279	73	1.4535767	0.042714834	1.4520572	295.2146	0	8.675171						88	5	2	NaN	NaN	NaN	0.36492	1	7651	7651		15.175	0.16249	1	7189.9			3439	1908	2003	2037	2710	2710					-0.01905931438955122
EFLHNMDYFK	10	Unmodified	_EFLHNMDYFK_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3;nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.5411458329666	3	448.541146	1342.60161	1.7395	0.00078025	6.6435	0.0029799	8.383	0.0037601	448.54378724928046	19.827	0.096277	19.813	19.741	19.837	-0.014141	1494	34	0.7172283	0.02044046	0.71570885	435.33463	0	12.406708						58	5	2	NaN	NaN	NaN	0.77513	1	18578	18578		1.5256	0	1	4133.2			3440	569	2004	2038	2711	2711					-0.05598864062562825
EFLLFYGM	8	Unmodified	_EFLLFYGM_					0	0	0			REV__nc|ENSG00000185238|O60678-2|PRMT3	REV__nc|ENSG00000185238|O60678-2|PRMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.24897168850003	2	510.248972	1018.48339	1.7439	0.0008898	-9.4252	-0.0048092	-7.6813	-0.0039194	510.2440243806721	28.653	0.072367	28.653	28.653	28.725	0	1275	76	0.85233563	0.046099424	0.85233563	346.01233	0	18.714447						126	4	3	NaN	NaN	NaN	0.79379	1	9307	9307		10.052	1.0896	1	15367	+		3441	10952	2005	2039	2712	2712					-0.02511191580401828
EFLLFYGM	8	Unmodified						0	0	0			REV__nc|ENSG00000185238|O60678-2|PRMT3	REV__nc|ENSG00000185238|O60678-2|PRMT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.248972	1018.48339	1.7439	0.0008898	-9.4252	-0.0048092	-7.6813	-0.0039194	510.2440243806721	28.653	0.072367	28.653	28.653	28.725	0	1275	76	0.85233563	0.046099424	0.85233563	346.01233		18.714447	-0.01957	-0.00033248	0.0016815	NaN	10.052	126	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15367	+		3442	10952	2005	2039							-0.02511191580401828
EFLLFYGM	8	Unmodified						0	0	0			REV__nc|ENSG00000185238|O60678-2|PRMT3	REV__nc|ENSG00000185238|O60678-2|PRMT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.248972	1018.48339	0.97492	0.00049745	-8.6166	-0.0043966	-7.6417	-0.0038992	510.2439844629992	28.701	0.072397	28.692	28.644	28.716	-0.0083504	1278	73	0.85049206	0.044262707	0.8489726	345.26392		17.96878	0.01957	0.00049263	-0.0016815	NaN	10.052	132	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11775	+		3443	10952	2005	2039							-0.02511191580401828
EFLPFHFLL	9	Unmodified	_EFLPFHFLL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.8184100599501	2	581.81841	1161.62227	1.4679	0.00085407	-3.5661	-0.0020748	-2.0982	-0.0012207	581.8163638543926	35.844	0.19275	35.844	35.795	35.988	0	1161	46	0.9222442	0.027540386	0.9222442	373.7765	0	11.161865						203	9	4	NaN	NaN	NaN	0.08074	1	15213	15213		38.608	2.0214	1	31002			3444	6028	2006	2040	2713	2713					0.04792094379422451
EFLPFHFLL	9	Unmodified	_EFLPFHFLL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8184100599501	2	581.81841	1161.62227	1.2136	0.0007061	-2.1667	-0.0012606	-0.95309	-0.00055452	581.816568272721	35.914	0.16879	35.916	35.867	36.036	0.0011024	1161	40	0.9222442	0.023868322	0.92072475	373.7765	0	9.6736145						212	8	4	NaN	NaN	NaN	0.034898	1	14695	14695		53.324	38.148	1	31213			3445	6028	2006	2040	2714	2714					0.04792094379422451
EFLPQSAFLKW	11	Unmodified	_EFLPQSAFLKW_					0	0	0		nc|ENSG00000107798|P38571-2|LIPA;ENSG00000107798|ENST00000336233|LIPA	nc|ENSG00000107798|P38571-2|LIPA	nc|ENSG00000107798|P38571-2|LIPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3637130206	2	683.363713	1364.71287	1.2734	0.00087021	-4.714	-0.0032214	-3.4406	-0.0023512	683.3598271953778	30.679	0.14474	30.673	30.625	30.77	-0.0057545	1083	46	0.9699114	0.027463317	0.96839195	392.4084	0	11.111145						158	7	3	NaN	NaN	NaN	0.22541	1	18824	18824		28.296	16.557	1	11707			3446	1645	2007	2041	2715	2715					0.04510518637016503
EFLSKSHLY	9	Unmodified	_EFLSKSHLY_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2927564154501	2	562.292756	1122.57096	2.1735	0.0012221	-4.5351	-0.0025501	-2.3616	-0.0013279	562.2896770712864	23.152	0.048262	23.152	23.128	23.176	0	1227	58	0.88180584	0.034956157	0.88180584	357.53308	0	14.173157						77	3	2	NaN	NaN	NaN	0.58159	1	13795	13795		6.2502	0.55606	1	5503.1			3447	3224	2008	2042	2716	2716					0.014577256147049411
EFLSKSHLY	9	Unmodified						0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.292756	1122.57096	2.1702	0.0012203	-0.9415	-0.0005294	1.2287	0.0006909	562.2915610433607	23.199	0.02413	23.186	23.162	23.186	-0.013294	1218	58	0.8873258	0.034952402	0.8858064	359.77115		14.171631	0.01716	0.0020385	0.0020003	NaN	6.2502	63	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4303.7			3448	3224	2008	2042							0.014577256147049411
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.80549964995	2	542.8055	1083.59645	2.0079	0.0010899	-1.834	-0.0009955	0.17387	9.4378E-05	542.8048553079028	18.029	0.07192	18.029	18.005	18.077	0	1257	43	0.86339295	0.025791943	0.86339295	350.22015	0	10.462067						91	4	2	NaN	NaN	NaN	0.045904	1	12133	12133		48.65	24.8	1	16795			3449	6186;1275	2009	2043	2717	2717					0.05799200137130356
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.80549964995	2	542.8055	1083.59645	2.0413	0.001108	-1.7237	-0.00093564	0.31761	0.0001724	542.8047408596276	18.146	0.12003	18.132	18.084	18.204	-0.013948	1257	37	0.86339295	0.022107422	0.8618735	350.22015	0	8.967468						115	6	2	NaN	NaN	NaN	0.040769	1	11825	11825		50.831	20.221	1	18001			3450	6186;1275	2009	2043	2718	2718					0.05799200137130356
EFNRYITYIAL	11	Unmodified	_EFNRYITYIAL_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.8719021934502	2	701.871902	1401.72925	0.86313	0.00060581	-7.5765	-0.0053177	-6.7133	-0.0047119	701.8667967683845	37	0.048073	37	37	37.048	0	1023	37	1.0064877	0.021924555	1.0064877	407.09863	0	8.86792						50	3	2	NaN	NaN	NaN	0.76276	1	20078	20078		3.261	0.37153	1	4236.3	+		3451	9459	2010	2044	2719	2719					0.044455998031480704
EFNTDMDI	8	Unmodified	_EFNTDMDI_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.7025826019	2	492.702583	983.390612	1.8271	0.00090021	1.5332	0.00075542	3.3603	0.0016556	492.70295996173013	16.158	0.071938	16.158	16.086	16.158	0	1338	49	0.81357855	0.029556334	0.81357855	330.43564	0	12.004364						90	4	2	NaN	NaN	NaN	0.72013	1	7989	7989		17.799	5.2111	1	32317			3452	4201	2011	2045	2720	2720					-0.10174741104435725
EFPDKGFFFAF	11	Unmodified	_EFPDKGFFFAF_					0	0	0		ENST00000460991.1_1_2:85066267-85069119:-|nuORF;nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.3215138549001	2	676.321514	1350.62847	0.66032	0.00044659	-1.8331	-0.0012398	-1.1728	-0.00079319	676.82220397213	33.962	0.28965	33.962	33.817	34.107	0	1101	58	0.95892316	0.034820557	0.95892316	388.00327	0	14.089233						321	13	3	NaN	NaN	NaN	0.44296	1	19548	19548		20.513	9.343	1	29745			3453	5488	2012	2046	2721	2721					-0.03281432179710464
EFPDKGFFFAF	11	Unmodified	_EFPDKGFFFAF_					0	0	0		ENST00000460991.1_1_2:85066267-85069119:-|nuORF;nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	ENST00000460991.1_1_2:85066267-85069119:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3215138549001	2	676.321514	1350.62847	0.56594	0.00038276	-2.3837	-0.0016122	-1.8178	-0.0012294	676.3200759306243	33.937	0.096497	33.936	33.863	33.96	-0.0012474	1101	52	0.95892316	0.03115189	0.9574037	388.0033	0	12.604797						137	5	2	NaN	NaN	NaN	0.12578	1	18674	18674		37.231	20.373	1	16512			3454	5488	2012	2046	2722	2722					-0.03281432179710464
EFPTGAILTL	10	Unmodified	_EFPTGAILTL_					0	0	0		PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant;nc|ENSG00000251692|Q96A99-2|PTX4;ENSG00000251692|ENST00000447419|PTX4	PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant	PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.29750744235	2	531.297507	1060.58046	0.65655	0.00034882	7.6055	0.0040408	8.262	0.0043896	531.3018986749855	27.687	0.14476	27.677	27.629	27.774	-0.009552	1245	67	0.87076044	0.04051274	0.869241	353.30484	0	16.437775						178	7	2	NaN	NaN	NaN	0.37681	1	10893	10893		24.562	1.4444	1	47173			3455	6108	2013	2047	2723	2723					0.05259493900234702
EFPTGAILTL	10	Unmodified						0	0	0		PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant;nc|ENSG00000251692|Q96A99-2|PTX4;ENSG00000251692|ENST00000447419|PTX4	PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant	PTX4|p.A457T|1|0.24|ENSG00000251692|chr16:1486007-1486007|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.297507	1060.58046	1.7784	0.00094484	8.8576	0.004706	10.636	0.0056508	531.3023917882974	27.833	0.072376	27.833	27.808	27.881	0	1242	40	0.87260187	0.023935497	0.87260187	354.05194		9.711639	0.077563	0.00089352	0.0016804	NaN	24.562	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5856.8			3456	6108	2013	2047							0.05259493900234702
EFQDIYNFV	9	Unmodified	_EFQDIYNFV_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7743964867999	2	587.774396	1173.53424	1.7147	0.0010078	3.2039	0.0018832	4.9186	0.002891	587.7766207581145	27.664	0.14478	27.664	27.664	27.808	0	1188	85	0.90571284	0.051433682	0.90571284	367.03275	0	20.84311						207	7	2	NaN	NaN	NaN	0.41766	1	15594	15594		13.003	0.43313	1	42108			3457	977	2014	2048	2724	2724					-0.04558571001894052
EFQDSIAL	8	Unmodified	_EFQDSIAL_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.4516388671999	1	922.451639	921.444362	2.0518	0.0018927	3.2397	0.0029885	5.2915	0.0048812	922.4540087106071	22.983	0.24088	22.983	22.838	23.079	0	363	55	1.4036897	0.03212142	1.4036897	285.32364	0	6.529236						151	11	2	NaN	NaN	NaN	0.67593	1	6433	6433		20.555	0.10679	1	9713.6			3458	554	2015	2049	2725	2725					-0.019502006104403335
EFQEAYVL	8	Unmodified	_EFQEAYVL_					0	0	0		ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4829389956	1	998.482939	997.475663	2.8122	0.0028079	2.371	0.0023674	5.1832	0.0051753	998.485743104205	25.491	0.21713	25.491	25.467	25.684	0	249	220	1.4713576	0.12984884	1.4713576	298.74246	0	26.36435						1304	10	5	NaN	NaN	NaN	0.63138	1	8474	8474		23.334	2.8858	1	691240			3459	6747	2016	2050	2726	2726					-0.023176275763375997
EFQEAYVL	8	Unmodified						0	0	0		ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.482939	997.475663	2.7886	0.0027844	2.8639	0.0028596	5.6526	0.005644	998.486372515069	25.491	0.31364	25.479	25.455	25.768	-0.012011	249	241	1.4713576	0.14233804	1.4698381	298.74246		28.900116	-0.0061477	0.00024789	-0.00075972	NaN	23.334	1340	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644480			3460	6747	2016	2050							-0.023176275763375997
EFQKEFYKL	9	Unmodified	_EFQKEFYKL_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2167680588	3	411.216768	1230.62847	1.5087	0.00062039	-3.0147	-0.0012397	-1.506	-0.00061929	411.2154795152012	20.285	0.16825	20.285	20.237	20.405	0	1524	70	0.698637	0.042771637	0.698637	424.44263	0	25.985016						280	8	4	NaN	NaN	NaN	0.12104	1	17272	17272		32.778	1.58	1	87419	+		3461	9968	2017	2051	2727	2727					0.02238567820290882
EFQKEQALW	9	Unmodified	_EFQKEQALW_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7956632451501	2	589.795663	1177.57677	0.81461	0.00048045	-2.3341	-0.0013766	-1.5195	-0.00089617	589.7934810222046	33.744	0.12068	33.742	33.67	33.79	-0.0018463	1206	46	0.894683	0.027576089	0.89316356	362.54855	0	11.174561						81	6	2	NaN	NaN	NaN	0.59509	1	15173	15173		5.6942	1.2811	1	5551.3			3462	3162	2018	2052	2728	2728					-0.004911758736170668
EFRDNEAL	8	Unmodified	_EFRDNEAL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4636005369999	1	993.463601	992.456324	2.2665	0.0022517	-0.60719	-0.00060322	1.6593	0.0016485	993.4625104950161	17.117	0.19202	17.117	17.093	17.285	0	327	88	1.425088	0.051643968	1.425088	289.36792	0	10.48642						361	9	2	NaN	NaN	NaN	0.39717	1	8302	8302		36.586	9.8549	1	37148	+		3463	10305	2019	2053	2729	2729					-0.04020583867247751
EFRRRREMHE	10	Unmodified	_EFRRRREMHE_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3625757026501	2	723.362576	1444.7106	1.0948	0.00079194	-3.4815	-0.0025184	-2.3866	-0.0017264	723.3609015149187	30.511	0.072418	30.511	30.487	30.56	0	855	97	1.1084836	0.05811441	1.1084836	448.22302	0	23.498993						154	4	2	NaN	NaN	NaN	0.78157	1	20353	20353		0.13493	0	1	13851	+		3464	11225	2020	2054	2730	2730					0.006031596803040884
EFRYVAFPAF	10	Unmodified	_EFRYVAFPAF_					0	0	0		ENST00000469802.5_1_20:61464351-61467803:+|nuORF	ENST00000469802.5_1_20:61464351-61467803:+|nuORF	ENST00000469802.5_1_20:61464351-61467803:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8163986872501	2	623.816399	1245.61824	1.2132	0.00075682	-5.5414	-0.0034568	-4.3282	-0.0027	623.8126702977441	32.37	0.048248	32.37	32.345	32.394	0	1128	40	0.9424274	0.023842633	0.9424274	381.6542	0	9.655518						45	3	2	NaN	NaN	NaN	0.76548	1	17653	17653		3.5698	0	1	4809.4			3465	7142	2021	2055	2731	2731					0.005260048857053334
EFSLHCETN	9	Unmodified	_EFSLHCETN_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.22675618995	2	540.226756	1078.43896	1.7994	0.00097206	-10.569	-0.0057094	-8.7692	-0.0047374	540.2213987719996	28.219	0.096529	28.219	28.194	28.291	0	1287	49	0.8449601	0.029505253	0.8449601	342.76382	0	11.969025						114	5	3	NaN	NaN	NaN	0.58159	1	11892	11892		6.2502	1.8371	1	9350.6			3466	3212	2022	2056	2732	2732					-0.09712247464540269
EFSLHCETN	9	Unmodified						0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.226756	1078.43896	1.1396	0.00061565	-10.399	-0.0056176	-9.2589	-0.0050019	540.2189113806184	28.242	0.14483	28.233	28.185	28.33	-0.0089779	1284	40	0.8468043	0.023971736	0.8452849	343.5119		9.724274	0.0072307	0.00010795	0.00016237	NaN	6.2502	133	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9590.2			3467	3212	2022	2056							-0.09712247464540269
EFSPGAVMV	9	Unmodified	_EFSPGAVMV_					0	0	0			REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4495303772002	1	936.44953	935.442254	1.8404	0.0017235	2.5383	0.002377	4.3788	0.0041005	936.4514540895298	26.48	0.14477	26.47	26.397	26.542	-0.010645	285	58	1.4500183	0.03381765	1.4484988	294.67575	0	6.8724976						114	7	2	NaN	NaN	NaN	0.3389	1	6590	6590		16.417	2.3751	1	9327.3	+		3468	11192	2023	2057	2733	2733					-0.02804952619874257
EFSPGAVMV	9	Unmodified						0	0	0			REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.44953	935.442254	1.7884	0.0016748	1.1155	0.0010446	2.9039	0.0027194	936.4497755330196	26.481	0.096546	26.481	26.408	26.505	0	291	61	1.446459	0.03559947	1.446459	293.95245		7.2345886	0.0054637	-0.00067294	-0.0010199	NaN	16.417	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7829.8	+		3469	11192	2023	2057							-0.02804952619874257
EFSPGAVMV	9	Unmodified						0	0	0			REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.44953	935.442254	1.8404	0.0017235	2.5383	0.002377	4.3788	0.0041005	936.4514540895298	26.48	0.14477	26.47	26.397	26.542	-0.010645	285	58	1.4500183	0.03381765	1.4484988	294.67575		6.8724976	-0.0054637	0.00065947	0.0010199	NaN	16.417	114	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9327.3	+		3470	11192	2023	2057							-0.02804952619874257
EFTEKNYNSF	10	Unmodified	_EFTEKNYNSF_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.78549248935	2	639.785492	1277.55643	2.1808	0.0013953	6.253	0.0040006	8.4339	0.0053959	639.7894158490074	18.698	0.19196	18.684	18.588	18.78	-0.014059	1158	49	0.92408	0.029365301	0.9225606	374.12143	0	11.888794						233	9	3	NaN	NaN	NaN	0.47445	1	17549	17549		20.513	3.655	1	25142			3471	5447	2024	2058	2734	2734					-0.07124391324100543
EFTQEALTE	9	Unmodified	_EFTQEALTE_					0	0	0		tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1	tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1	tr|U7T0U3|U7T0U3_FUSNUATP-dependentClpproteaseATP-bindingsubunitClpXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpXPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2482115260499	2	534.248212	1066.48187	0.74092	0.00039583	4.5061	0.0024074	5.247	0.0028032	534.2509195877761	26.939	0.12065	26.928	26.88	27.001	-0.010645	1275	49	0.85233563	0.029495716	0.8508162	345.80457	0	11.966797						113	6	2	NaN	NaN	NaN	0.18779	1	11129	11129		26.115	8.316	1	16675			3472	13942	2025	2059	2735	2735					-0.04871154135503275
EFTTKLLASC	10	Unmodified	_EFTTKLLASC_					0	0	0		ENST00000483586.5_1_1:109289335-109299406:+|nuORF;ENSG00000116266|ENST00000370008|STXBP3	ENST00000483586.5_1_1:109289335-109299406:+|nuORF	ENST00000483586.5_1_1:109289335-109299406:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.78644961705	2	556.78645	1111.55835	1.6474	0.00091727	6.3973	0.0035619	8.0447	0.0044792	556.7912849160567	22.863	0.12062	22.863	22.79	22.911	0	1233	61	0.87812483	0.03680587	0.87812483	356.08334	0	14.924957						121	6	2	NaN	NaN	NaN	0.6772	1	13344	13344		9.6116	1.3668	1	13505			3473	2075	2026	2060	2736	2736					0.007029461601632647
EFTTSYRELSK	11	Unmodified	_EFTTSYRELSK_					0	0	0		nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9	nc|ENSG00000144550|Q8IYJ1-2|CPNE9	nc|ENSG00000144550|Q8IYJ1-2|CPNE9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8407990303	2	680.840799	1359.66705	2.0374	0.0013872	3.5572	0.0024219	5.5947	0.0038091	680.8431024347315	23.176	0.12057	23.176	23.128	23.248	0	1113	73	0.9515937	0.043981552	0.9515937	385.01166	0	17.79477						203	6	3	NaN	NaN	NaN	0.74155	1	19675	19675		4.7291	0	1	30487			3474	3479	2027	2061	2737	2737					0.0015982866414105956
EFTTVLYNF	9	Unmodified	_EFTTVLYNF_					0	0	0		nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-5|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892	2	567.279315	1132.54408	1.1762	0.00066722	-2.004	-0.0011368	-0.82777	-0.00046958	567.2781539445627	31.549	0.2655	31.549	31.428	31.694	0	1236	70	0.876284	0.042329073	0.876284	355.25626	0	17.160706						299	12	4	NaN	NaN	NaN	0.094712	1	14171	14171		36.586	11.625	1	58335			3475	809	2028	2062	2738	2738					-0.01689382996482891
EFTVGCGP	8	Unmodified	_EFTVGCGP_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3498163326001	1	809.349816	808.34254	1.6592	0.0013429	-5.7833	-0.0046807	-4.1241	-0.0033378	809.3452144249082	29.376	0.072374	29.368	29.344	29.417	-0.0077229	549	49	1.292695	0.028738618	1.2911756	263.3027	0	5.853607						72	4	2	NaN	NaN	NaN	0.84727	1	4773	4773		1.2418	0.16982	1	5689.5	+		3476	11164	2029	2063	2739	2739					-0.06929770233830368
EFVADIKSD	9	Unmodified	_EFVADIKSD_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.25329690395	2	512.253297	1022.49204	2.1256	0.0010888	-8.0606	-0.004129	-5.9349	-0.0030402	512.2492641666279	17.045	0.14409	17.045	17.021	17.165	0	1305	55	0.83389086	0.03322929	0.83389086	338.50684	0	13.489014						201	7	4	NaN	NaN	NaN	0.46215	1	9456	9456		11.17	0.56537	1	35543	+		3477	10005	2030	2064	2740	2740					-0.01830546410246825
EFVASVEKKCF	11	Unmodified	_EFVASVEKKCF_					0	0	0			REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.5531628847333	3	429.553163	1285.63766	1.7402	0.00074749	-9.5744	-0.0041127	-7.8343	-0.0033652	429.5489688784905	18.82	0.14401	18.82	18.772	18.916	0	1479	37	0.72651637	0.022285342	0.72651637	441.171	0	13.532593						159	7	4	NaN	NaN	NaN	0.6011	1	18532	18532		7.4554	0	1	16515	+		3478	10104	2031	2065	2741	2741					0.006265931142934278
EFVFSYGP	8	Unmodified	_EFVFSYGP_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.22126849405004	2	473.221268	944.427984	0.57091	0.00027017	-1.1598	-0.00054885	-0.58891	-0.00027869	473.22114537531445	33.938	0.14479	33.938	33.914	34.059	0	1317	34	0.8265074	0.020307899	0.8265074	335.87762	0	8.252777						101	7	2	NaN	NaN	NaN	0.62311	1	6925	6925		23.85	0	1	9599.7			3479	892	2032	2066	2742	2742					-0.046452817765157306
EFVQQFHSF	9	Unmodified	_EFVQQFHSF_					0	0	0		ENST00000420940.6_1_3:39136851-39137028:+|nuORF	ENST00000420940.6_1_3:39136851-39137028:+|nuORF	ENST00000420940.6_1_3:39136851-39137028:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7747308378001	2	584.774731	1167.53491	2.0658	0.001208	-5.5835	-0.0032651	-3.5177	-0.0020571	584.7714965867659	16.662	0.14397	16.662	16.638	16.782	0	1203	55	0.8965218	0.03309667	0.8965218	363.3299	0	13.412964						116	7	2	NaN	NaN	NaN	0.60736	1	15389	15389		5.1889	0.45981	1	8584.7			3480	6908	2033	2067	2743	2743					-0.04215731562135261
EFWKDPWLIV	10	Unmodified	_EFWKDPWLIV_					0	0	0		ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.8529811588	2	666.852981	1331.69141	1.2733	0.00084909	-1.9514	-0.0013013	-0.67815	-0.00045223	667.3521457142535	32.803	0.14476	32.8	32.751	32.896	-0.0031052	1107	64	0.9552588	0.038469315	0.9537394	386.57626	0	15.567841						161	7	3	NaN	NaN	NaN	0.72369	1	18423	18423		6.4299	1.2411	1	14510			3481	6393	2034	2068	2744	2744					0.038831336083148926
EFYNLELVAT	10	Unmodified	_EFYNLELVAT_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8031539262499	2	599.803154	1197.59175	1.6308	0.00097816	-0.97021	-0.00058194	0.66059	0.00039622	599.8026127896685	25.274	0.19301	25.274	25.178	25.371	0	1173	79	0.91489893	0.047744393	0.91489893	370.66882	0	19.343506						317	9	4	NaN	NaN	NaN	0.71559	1	16394	16394		6.9844	0.12115	1	64185			3482	13791	2035	2069	2745	2745					0.0008627120369055774
EFYYLPEM	8	Unmodified	_EFYYLPEM_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;nc|ENSG00000172915|Q8NFP9-3|NBEA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.24134362165	2	546.241344	1090.46813	1.3642	0.00074518	7.1423	0.0039014	8.5065	0.0046466	546.2452963087119	27.591	0.048233	27.591	27.591	27.639	0	1302	34	0.8357362	0.020296931	0.8357362	338.97482	0	8.232452						47	3	2	NaN	NaN	NaN	0.83211	1	12405	12405		4.9097	0.49665	1	4806.6			3483	5784	2036	2070	2746	2746					-0.07348103168260423
EFYYLPEM	8	Unmodified						0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;nc|ENSG00000172915|Q8NFP9-3|NBEA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF;nc|ENSG00000172915|Q8NFP9|NBEA;ENSG00000172915|ENST00000379939|NBEA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.241344	1090.46813	1.2269	0.00067017	5.7105	0.0031193	6.9373	0.0037895	546.2445984021588	27.687	0.16889	27.677	27.653	27.822	-0.009552	1302	43	0.8357362	0.025831044	0.8342168	338.97485		10.477081	0.043067	-0.0010455	-0.00075972	NaN	4.9097	97	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8615			3484	5784	2036	2070							-0.07348103168260423
EGAGILLTR	9	Unmodified	_EGAGILLTR_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.27436669705	2	465.274367	928.53418	1.2718	0.00059172	-1.6348	-0.00076065	-0.36308	-0.00016893	465.2736236971026	19.612	0.16805	19.612	19.564	19.732	0	1344	43	0.8098828	0.025873005	0.8098828	329.2025	0	10.516937						193	8	3	NaN	NaN	NaN	0.25424	1	6564	6564		21.85	2.7321	1	31748			3485	2872	2037	2071	2747	2747					0.06705473788804284
EGAGILLTR	9	Unmodified	_EGAGILLTR_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.27436669705	2	465.274367	928.53418	0.68665	0.00031948	-0.92651	-0.00043108	-0.23986	-0.0001116	465.27387424568076	19.635	0.16846	19.621	19.573	19.741	-0.014141	1344	43	0.8098828	0.025873005	0.8083634	329.2025	0	10.516907						166	8	3	NaN	NaN	NaN	0.017558	1	6434	6434		75.089	27.087	1	29627			3486	2872	2037	2071	2748	2748					0.06705473788804284
EGAVIGWKGQ	10	Unmodified	_EGAVIGWKGQ_					0	0	0		ENST00000465269.5_1_X:48660634-48660790:+|nuORF	ENST00000465269.5_1_X:48660634-48660790:+|nuORF	ENST00000465269.5_1_X:48660634-48660790:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.77727352675	2	522.777274	1043.53999	1.1362	0.00059396	8.4004	0.0043916	9.5366	0.0049855	522.7813568961761	34.202	0.19295	34.201	34.153	34.346	-0.0012474	1251	100	0.8670771	0.06082499	0.8655577	351.88394	0	24.684479						332	9	4	NaN	NaN	NaN	0.64158	1	10156	10156		12.049	3.0867	1	56294			3487	7106	2038	2072	2749	2749					0.019965723004588654
EGCWDGQGG	9	Unmodified	_EGCWDGQGG_					0	0	0			REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.66379179240005	2	454.663792	907.313031	1.1725	0.00053309	-4.8494	-0.0022048	-3.6769	-0.0016717	454.6618371270997	22.573	0.19296	22.573	22.501	22.694	0	1377	31	0.7895419	0.018502772	0.7895419	321.04373	0	7.52359						113	9	2	NaN	NaN	NaN	0.6532	1	6191	6191		3.2116	0.058268	1	8465.5	+		3488	12867	2039	2073	2750	2750					-0.14433334249963536
EGCWDGQGG	9	Unmodified						0	0	0			REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	454.663792	907.313031	1.1725	0.00053309	-4.8494	-0.0022048	-3.6769	-0.0016717	454.6618371270997	22.573	0.19296	22.573	22.501	22.694	0	1377	31	0.7895419	0.018502772	0.7895419	321.04373		7.52359	-0.029129	0.00016014	-0.00016537	NaN	3.2116	113	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8465.5	+		3489	12867	2039	2073							-0.14433334249963536
EGCWDGQGG	9	Unmodified						0	0	0			REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	REV__ENST00000583167.5_1_17:45893705-45894118:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	454.663792	907.313031	1.994	0.00090658	-5.4008	-0.0024555	-3.4068	-0.001549	454.66173666381934	22.645	0.048246	22.631	22.631	22.68	-0.01354	1374	28	0.791392	0.01665157	0.7898726	321.79605		6.770874	0.029129	-0.00034128	0.00016537	NaN	3.2116	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2708	+		3490	12867	2039	2073							-0.14433334249963536
EGDALDDL	8	Unmodified	_EGDALDDL_					0	0	0		POLR2L|p.A37D|1|0.34|ENSG00000177700|chr11:840466-840466|G/T|missense_variant	POLR2L|p.A37D|1|0.34|ENSG00000177700|chr11:840466-840466|G/T|missense_variant	POLR2L|p.A37D|1|0.34|ENSG00000177700|chr11:840466-840466|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.3679688173	1	847.367969	846.360692	1.484	0.0012575	-0.71585	-0.00060659	0.76812	0.00065088	847.3673087579945	21.031	0.12028	21.031	20.983	21.103	0	492	37	1.3267875	0.021510243	1.3267875	270.0439	0	4.3780518						84	6	2	NaN	NaN	NaN	0.74229	1	5339	5339		16.417	0	1	5789.2			3491	8102	2040	2074	2751	2751					-0.06863356778126217
EGEEDQNPPCP	11	Unmodified	_EGEEDQNPPCP_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;nc|ENSG00000162825|P0DPF2|NBPF20;ENST00000401087.3_3_1:149089877-149094694:-|nuORF;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.7351423280501	2	607.735142	1213.45573	1.2095	0.00073506	-7.1918	-0.0043707	-5.9823	-0.0036356	607.7309694173256	12.076	0.19214	12.076	12.028	12.22	0	1251	46	0.8670771	0.027626812	0.8670771	351.24164	0	11.191254						225	9	4	NaN	NaN	NaN	0.6875	1	16806	16806		8.2775	0.032722	1	30005			3492	4185	2041	2075	2752	2752					-0.1424579136923967
EGEKGFDAI	9	Unmodified	_EGEKGFDAI_					0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4574525266002	1	965.457453	964.450176	1.7398	0.0016797	1.3714	0.001324	3.1112	0.0030037	965.4593726341255	23.079	0.28923	23.065	22.945	23.234	-0.013294	330	130	1.4233059	0.07657564	1.4217864	289.12097	0	15.555054						770	13	4	NaN	NaN	NaN	0.13602	1	7309	7309		30.61	2.8213	1	126480	+		3493	13514	2042	2076	2753	2753					-0.03347102098746291
EGFENARY	8	Unmodified	_EGFENARY_					0	0	0			REV__BAAT|p.H49Y|1|0.31|ENSG00000136881|chr9:101371260-101371260|G/A|missense_variant	REV__BAAT|p.H49Y|1|0.31|ENSG00000136881|chr9:101371260-101371260|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.22233112655	2	493.222331	984.430109	1.1158	0.00055031	2.5255	0.0012456	3.6412	0.0017959	493.223440522627	15.412	0.16787	15.4	15.352	15.52	-0.012201	1317	61	0.8265074	0.03692949	0.82498795	335.6818	0	14.998718						154	8	2	NaN	NaN	NaN	0.78264	1	7848	7848		11.548	0	1	16314	+		3494	8158	2043	2077	2754	2754					-0.06272853038717585
EGFIQGHDV	9	Unmodified	_EGFIQGHDV_					0	0	0		ENST00000360311.4_1_3:32030681-32030846:+|nuORF	ENST00000360311.4_1_3:32030681-32030846:+|nuORF	ENST00000360311.4_1_3:32030681-32030846:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4686859149001	1	1001.46869	1000.46141	1.2287	0.0012305	2.5767	0.0025805	3.8055	0.0038111	1001.4715086952012	41.69	0.1443	41.69	41.57	41.714	0	333	46	1.4215236	0.026737928	1.4215236	288.6125	0	5.4286194						110	7	2	NaN	NaN	NaN	0.56671	1	8597	8597		6.8632	0.613	1	8487.6			3495	6596	2044	2078	2755	2755					-0.03880280004614178
EGGFKISYEW	10	Unmodified	_EGGFKISYEW_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.28767103755	2	608.287671	1214.56079	0.98764	0.00060077	-1.779	-0.0010821	-0.79136	-0.00048138	608.2863544681871	21.681	0.21651	21.667	21.595	21.812	-0.013895	1170	88	0.91673553	0.053296506	0.9152161	371.3538	0	21.589539						263	10	2	NaN	NaN	NaN	0.5626	1	16165	16165		16.858	0	1	28219			3496	3424	2045	2079	2756	2756					-0.037908821105247625
EGGHAGII	8	Unmodified	_EGGHAGII_					0	0	0			REV__nc|ENSG00000172005|P21145-2|MAL	REV__nc|ENSG00000172005|P21145-2|MAL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.3889790309003	1	753.388979	752.381703	1.5516	0.001169	-0.31567	-0.00023782	1.2359	0.00093113	753.3890315487547	20.381	0.16861	20.367	20.295	20.463	-0.014141	564	49	1.2837118	0.028753877	1.2821923	261.7976	0	5.864044						177	8	2	NaN	NaN	NaN	0.82332	1	4028	4028		6.0903	0	1	19292	+		3497	10644	2046	2080	2757	2757					-0.004393018879341071
EGGLGSAF	8	Unmodified	_EGGLGSAF_					0	0	0			REV__ENST00000462171.1_1_1:20076843-20097914:-|nuORF	REV__ENST00000462171.1_1_1:20076843-20097914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3464455142	1	737.346446	736.339169	1.5236	0.0011235	-0.8069	-0.00059496	0.71675	0.00052849	737.3459466569047	19.324	0.19201	19.324	19.252	19.444	0	624	58	1.247731	0.034223795	1.247731	254.55896	0	6.9822693						219	9	2	NaN	NaN	NaN	0.54545	1	3843	3843		28.667	0	1	24689	+		3498	10240	2047	2081	2758	2758					-0.03954697016195041
EGGLGSAF	8	Unmodified						0	0	0			REV__ENST00000462171.1_1_1:20076843-20097914:-|nuORF	REV__ENST00000462171.1_1_1:20076843-20097914:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.346446	736.339169	1.5236	0.0011235	-0.8069	-0.00059496	0.71675	0.00052849	737.3459466569047	19.324	0.19201	19.324	19.252	19.444	0	624	58	1.247731	0.034223795	1.247731	254.55896		6.9822693	0.0080503	-9.9561E-06	-0.00014072	NaN	28.667	219	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24689	+		3499	10240	2047	2081							-0.03954697016195041
EGGSFAGG	8	Unmodified	_EGGSFAGG_					0	0	0			REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	341.145560862	2	341.145561	680.276569	1.9134	0.00065273	3.202	0.0010923	5.1153	0.0017451	341.14667226738686	28.219	0.16889	28.219	28.17	28.339	0	1521	52	0.70049703	0.031617224	0.70049703	286.24905	0	12.919952						212	8	3	NaN	NaN	NaN	0.82332	1	2845	2845		6.0903	2.5171	1	28653	+		3500	11098	2048	2082	2759	2759					-0.07635843084369753
EGGSFAGG	8	Unmodified						0	0	0			REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	341.145561	680.276569	1.9134	0.00065273	3.202	0.0010923	5.1153	0.0017451	341.14667226738686	28.219	0.16889	28.219	28.17	28.339	0	1521	52	0.70049703	0.031617224	0.70049703	286.24905		12.919952	0.0048441	0.00020182	-0.0001702	NaN	6.0903	212	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28653	+		3501	11098	2048	2082							-0.07635843084369753
EGGSFAGG	8	Unmodified						0	0	0			REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	REV__ENST00000590511.1_1_19:5717546-5720167:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	341.145561	680.276569	1.4563	0.00049681	2.6331	0.00089828	4.0894	0.0013951	341.14712184249817	28.218	0.21718	28.209	28.137	28.354	-0.0089779	1518	76	0.7023569	0.0464707	0.70083743	287.00906		18.989655	-0.0048441	-0.00018631	0.0001702	NaN	6.0903	347	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51382	+		3502	11098	2048	2082							-0.07635843084369753
EGHEEMVAL	9	Unmodified	_EGHEEMVAL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;ENST00000490185.1_1_5:139838323-139844373:+|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.73167439235004	2	507.731674	1013.4488	1.8501	0.00093935	-1.8993	-0.00096435	-0.049236	-2.4999E-05	507.7313667050292	19.564	0.12005	19.564	19.54	19.66	0	1284	43	0.8468043	0.025819898	0.8468043	343.78958	0	10.482483						130	6	3	NaN	NaN	NaN	0.39244	1	9107	9107		14.042	7.7914	1	11460			3503	2713;2763	2049	2083	2760	2760					-0.0573905945915385
EGHEEMVAL	9	Unmodified	_EGHEEMVAL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;ENST00000490185.1_1_5:139838323-139844373:+|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.73167439235004	2	507.731674	1013.4488	1.3936	0.00070759	-0.89637	-0.00045511	0.49726	0.00025248	507.73080313242764	19.587	0.1204	19.573	19.549	19.669	-0.014141	1284	40	0.8468043	0.0239743	0.8452849	343.78958	0	9.733215						119	6	3	NaN	NaN	NaN	0.49672	1	8931	8931		9.746	5.7775	1	9693.4			3504	2713;2763	2049	2083	2761	2761					-0.0573905945915385
EGHGVPLG	8	Unmodified	_EGHGVPLG_					0	0	0			REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.19812774875004	2	383.198128	764.381703	1.428	0.00054721	-3.2324	-0.0012386	-1.8044	-0.00069144	383.1974524303731	27.326	0.024139	27.326	27.302	27.326	0	1452	49	0.74322224	0.029678345	0.74322224	303.05026	0	12.10141						45	2	2	NaN	NaN	NaN	0.84727	1	4274	4274		1.2418	0.16982	1	3026.9	+		3505	11737	2050	2084	2762	2762					-0.009913018879501578
EGLAAPPR	8	Unmodified	_EGLAAPPR_					0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.72705236369995	2	405.727052	809.439552	0.94852	0.00038484	0.57967	0.00023519	1.5282	0.00062003	405.7269915548647	26.988	0.096506	26.988	26.964	27.06	0	1362	43	0.79879075	0.025892675	0.79879075	325.38937	0	10.547455						84	5	2	NaN	NaN	NaN	0.77489	1	4881	4881		12.588	0	1	9038.3			3506	2644	2051	2085	2763	2763					0.02720960037459008
EGLAAPPR	8	Unmodified						0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.727052	809.439552	1.6438	0.00066693	2.791	0.0011324	4.4348	0.0017993	405.7284294913671	27.132	0.048267	27.122	27.122	27.17	-0.010126	1368	34	0.7950918	0.02034533	0.79357237	323.88257		8.28772	0.06696	0.00096066	-0.0026092	NaN	12.588	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3399.9			3507	2644	2051	2085							0.02720960037459008
EGLAQELAAE	10	Unmodified	_EGLAQELAAE_					0	0	0			REV__nc|ENSG00000072310|P36956-5|SREBF1	REV__nc|ENSG00000072310|P36956-5|SREBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5051310007	1	1030.50513	1029.49785	0.88397	0.00091094	5.5414	0.0057105	6.4254	0.0066214	1030.5103881983814	31.308	0.1448	31.308	31.284	31.428	0	159	94	1.5245869	0.054930925	1.5245869	309.4188	0	11.148346						172	7	2	NaN	NaN	NaN	0.38071	1	9750	9750		24.4	0.5498	1	27163	+		3508	8585	2052	2086	2764	2764					-0.01571447898572842
EGLDMFDVI	9	Unmodified	_EGLDMFDVI_					0	0	0		ENST00000508132.1_1_5:31294350-31302435:+|nuORF;nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	ENST00000508132.1_1_5:31294350-31302435:+|nuORF	ENST00000508132.1_1_5:31294350-31302435:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4812244360999	1	1038.48122	1037.47395	1.3432	0.0013949	-2.4442	-0.0025382	-1.101	-0.0011434	1038.4790029135997	36.88	0.09621	36.88	36.832	36.928	0	201	73	1.4997677	0.042574525	1.4997677	304.35074	0	8.639709						207	5	3	NaN	NaN	NaN	0.3389	1	10092	10092		16.417	2.3751	1	23945			3509	1909	2053	2087	2765	2765					-0.04329004656597135
EGLDMFDVI	9	Unmodified						0	0	0		ENST00000508132.1_1_5:31294350-31302435:+|nuORF;nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	ENST00000508132.1_1_5:31294350-31302435:+|nuORF	ENST00000508132.1_1_5:31294350-31302435:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1038.48122	1037.47395	1.0917	0.0011337	-2.5245	-0.0026217	-1.4328	-0.0014879	1038.4776751462243	36.878	0.16821	36.88	36.832	37	0.0022507	201	70	1.4997677	0.040798426	1.4982482	304.35074		8.279297	3.832E-05	-3.75E-05	-0.00075972	NaN	16.417	256	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24802			3510	1909	2053	2087							-0.04329004656597135
EGLEVWTSLCN	11	Unmodified	_EGLEVWTSLCN_					0	0	0			REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.7897205875001	2	625.789721	1249.56489	1.174	0.00073469	4.2762	0.002676	5.4503	0.0034107	625.7926113273461	21.561	0.2168	21.547	21.451	21.667	-0.013895	1164	67	0.9204082	0.040399075	0.91888875	372.72412	0	16.359833						300	10	3	NaN	NaN	NaN	0.67772	1	17012	17012		8.9191	0.64155	1	39323	+		3511	12950	2054	2088	2766	2766					-0.04991160679105633
EGLLTFFF	8	Unmodified	_EGLLTFFF_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.2551113114	2	487.255111	972.49567	2.0474	0.00099762	-7.3493	-0.003581	-5.3018	-0.0025833	487.25219351079954	18.338	0.16815	18.324	18.3	18.468	-0.01395	1353	58	0.8043377	0.035111487	0.80281824	326.73294	0	14.262787						137	8	2	NaN	NaN	NaN	0.57691	1	7526	7526		26.732	0	1	18504			3512	5289	2055	2089	2767	2767					0.008321681542838633
EGLLTFFF	8	Unmodified						0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	487.255111	972.49567	2.32	0.0011304	-10.112	-0.0049269	-7.7915	-0.0037964	487.2499354523051	18.316	0.12005	18.316	18.292	18.412	0	1356	43	0.8024889	0.02588147	0.8024889	325.98196		10.513397	-0.0035942	-0.0013136	-0.00016467	NaN	26.732	122	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15031			3513	5289	2055	2089							0.008321681542838633
EGPADEYYII	10	Unmodified	_EGPADEYYII_					0	0	0		ENST00000463300.1_1_2:55445673-55449583:-|nuORF;ENSG00000162994|ENST00000401408|CLHC1	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.27168662235	2	585.271687	1168.52882	2.2134	0.0012954	-1.9544	-0.0011439	0.25895	0.00015156	585.2710111344354	21.368	0.04808	21.354	21.354	21.402	-0.014006	1200	43	0.89836043	0.025736272	0.896841	364.07138	0	10.429962						42	3	2	NaN	NaN	NaN	0.67523	1	14894	14894		9.746	1.4557	1	3015.8			3514	4194	2056	2090	2768	2768					-0.04870294584338808
EGPADEYYII	10	Unmodified	_EGPADEYYII_					0	0	0		ENST00000463300.1_1_2:55445673-55449583:-|nuORF;ENSG00000162994|ENST00000401408|CLHC1	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.27168662235	2	585.271687	1168.52882	1.3823	0.00080904	1.4099	0.00082517	2.7922	0.0016342	585.2724434826321	21.32	0.09621	21.306	21.234	21.33	-0.014006	1218	58	0.8873258	0.034948587	0.8858064	359.59946	0	14.163361						126	5	2	NaN	NaN	NaN	0.67523	1	14896	14896		9.746	1.4557	1	12497			3515	4194	2056	2090	2769	2769					-0.04870294584338808
EGPADEYYII	10	Unmodified						0	0	0		ENST00000463300.1_1_2:55445673-55449583:-|nuORF;ENSG00000162994|ENST00000401408|CLHC1	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	ENST00000463300.1_1_2:55445673-55449583:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.271687	1168.52882	1.9593	0.0011467	3.3156	0.0019405	5.2749	0.0030872	585.7750069392843	21.344	0.048136	21.344	21.32	21.368	0	1203	52	0.8965218	0.03125292	0.8965218	363.32623		12.665619	-0.0050592	0.0031144	-0.00015958	NaN	9.746	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2684.1			3516	4194	2056	2090							-0.04870294584338808
EGPAVGGV	8	Unmodified	_EGPAVGGV_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3515308921002	1	685.351531	684.344254	1.6469	0.0011287	6.8688	0.0047075	8.5157	0.0058362	685.3560781622884	24.623	0.193	24.623	24.598	24.791	0	714	55	1.1936152	0.032525063	1.1936152	243.85623	0	6.6448975						160	9	2	NaN	NaN	NaN	0.84651	1	2933	2933		1.6704	0	1	16174			3517	4815	2057	2091	2770	2770					-0.010543931535607953
EGPDSISFY	9	Unmodified	_EGPDSISFY_					0	0	0		nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9	nc|ENSG00000088727|Q9HAQ2-2|KIF9	nc|ENSG00000088727|Q9HAQ2-2|KIF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4414681114	1	1014.44147	1013.43419	1.5338	0.001556	-2.9009	-0.0029428	-1.3671	-0.0013869	1014.4385636516475	29.618	0.096546	29.61	29.562	29.659	-0.0070648	264	49	1.4624695	0.028446317	1.46095	296.8741	0	5.7744446						111	5	2	NaN	NaN	NaN	0.36492	1	8925	8925		15.175	0	1	9902			3518	1019	2058	2092	2771	2771					-0.07198808335658669
EGPPGPGG	8	Unmodified	_EGPPGPGG_					0	0	0		ENST00000498522.5_1_9:35605559-35607650:+|nuORF;ENSG00000107140|ENST00000336395|TESK1	ENST00000498522.5_1_9:35605559-35607650:+|nuORF	ENST00000498522.5_1_9:35605559-35607650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3045806995002	1	667.304581	666.297304	0.91395	0.00060988	4.817	0.0032144	5.7309	0.0038243	667.3082065768033	35.023	0.14479	35.023	34.999	35.144	0	768	109	1.1610622	0.065126896	1.1610622	237.33159	0	13.312515						286	7	3	NaN	NaN	NaN	0.84876	1	2478	2478		0.39566	0	1	40984			3519	1625	2059	2093	2772	2772					-0.04919252704689825
EGPVLILG	8	Unmodified	_EGPVLILG_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.4767314057003	1	797.476731	796.469455	1.8247	0.0014552	-1.4591	-0.0011636	0.36565	0.0002916	797.475047846927	28.483	0.096508	28.475	28.475	28.572	-0.0083504	543	40	1.296287	0.023348808	1.2947675	264.10004	0	4.7569885						64	5	2	NaN	NaN	NaN	0.84887	1	4624	4624		0.32989	0	1	4461.7			3520	3529	2060	2094	2773	2773					0.06307898982834104
EGPVLILG	8	Unmodified	_EGPVLILG_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.4767314057003	1	797.476731	796.469455	0.16862	0.00013447	0.42101	0.00033574	0.58962	0.00047021	797.4771073972342	46.22	0.1681	46.23	46.134	46.302	0.0098152	300	49	1.4411188	0.028482556	1.4395994	293.60748	0	5.802948						143	8	2	NaN	NaN	NaN	0.84945	1	4625	4625		0	0	1	12125			3521	3529	2060	2094	2774	2774					0.06307898982834104
EGPVLILG	8	Unmodified						0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	797.476731	796.469455	2.5215	0.0020108	-2.5436	-0.0020284	-0.022094	-1.7619E-05	797.4754929782421	28.243	0.02412	28.243	28.219	28.243	0	510	31	1.316029	0.017936707	1.316029	268.1222		3.654358	-0.11613	-0.00052718	0.010631	NaN	0.32989	32	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1629.3			3522	3529	2060	2094							0.06307898982834104
EGSPDSYEL	9	Unmodified	_EGSPDSYEL_					0	0	0		ENST00000548317.1_1_12:53607836-53609095:-|nuORF;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000172819|ENST00000425354|RARG;ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000548317.1_1_12:53607836-53609095:-|nuORF	ENST00000548317.1_1_12:53607836-53609095:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4156472914	1	996.415647	995.408371	1.6881	0.001682	-0.62902	-0.00062676	1.0591	0.0010553	996.4149905079533	20.694	0.02409	20.694	20.67	20.694	0	318	52	1.4304334	0.030293345	1.4304334	290.4415	0	6.1509094						56	2	2	NaN	NaN	NaN	0.23112	1	8386	8386		23.334	4.2161	1	6171.4			3523	4856	2061	2095	2775	2775					-0.08951702577940068
EGSPDSYEL	9	Unmodified	_EGSPDSYEL_					0	0	0		ENST00000548317.1_1_12:53607836-53609095:-|nuORF;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000172819|ENST00000425354|RARG;ENST00000550265.5_1_12:53607169-53614138:-|nuORF	ENST00000548317.1_1_12:53607836-53609095:-|nuORF	ENST00000548317.1_1_12:53607836-53609095:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4156472914	1	996.415647	995.408371	1.6656	0.0016596	-0.24668	-0.0002458	1.4189	0.0014138	996.4154021690632	20.742	0.12048	20.742	20.742	20.862	0	324	46	1.42687	0.026726604	1.42687	289.718	0	5.426697						109	6	2	NaN	NaN	NaN	0.23112	1	8387	8387		23.334	4.2161	1	9089.3			3524	4856	2061	2095	2776	2776					-0.08951702577940068
EGTGVLSAL	9	Unmodified	_EGTGVLSAL_					0	0	0		ENST00000251343.9_1_14:24909445-24909838:+|nuORF	ENST00000251343.9_1_14:24909445-24909838:+|nuORF	ENST00000251343.9_1_14:24909445-24909838:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.4567242451	1	846.456724	845.449448	1.9491	0.0016498	-0.40189	-0.00034018	1.5472	0.0013096	846.4561645841884	26.022	0.24135	26.011	25.962	26.204	-0.011135	420	97	1.3697531	0.057244778	1.3682337	278.79358	0	11.651337						449	11	5	NaN	NaN	NaN	0.094712	1	5199	5199		36.586	2.1477	1	101820			3525	6275	2062	2096	2777	2777					0.02054103252180539
EGVFNFGE	8	Unmodified	_EGVFNFGE_					0	0	0		ENST00000533717.5_1_11:248741-248861:+|nuORF;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13	ENST00000533717.5_1_11:248741-248861:+|nuORF	ENST00000533717.5_1_11:248741-248861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.70070022745	2	449.7007	897.386848	1.7449	0.00078469	-3.6326	-0.0016336	-1.8877	-0.0008489	449.6992748069803	21.753	0.048159	21.74	21.715	21.764	-0.013895	1326	28	0.8209676	0.01662457	0.81944823	333.87714	0	6.761017						44	3	2	NaN	NaN	NaN	0.83913	1	5905	5905		3.9685	0	1	3764.8			3526	5425	2063	2097	2778	2778					-0.06595042815990837
EGVPHEMSAE	10	Unmodified	_EGVPHEMSAE_					0	0	0		ENST00000229243.6_2_12:6747544-6748168:-|nuORF	ENST00000229243.6_2_12:6747544-6748168:-|nuORF	ENST00000229243.6_2_12:6747544-6748168:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2320385331001	2	543.232039	1084.44952	1.9332	0.0010502	6.1217	0.0033255	8.0549	0.0043757	543.2362066651899	26.239	0.096506	26.228	26.18	26.276	-0.011137	1290	37	0.84311575	0.022133768	0.8415963	341.99164	0	8.978058						118	5	3	NaN	NaN	NaN	0.73444	1	11830	11830		5.6942	0.2283	1	8880.6			3527	6244	2064	2098	2779	2779					-0.08932264810118795
EGYISKGG	8	Unmodified	_EGYISKGG_					0	0	0			REV__ENST00000450091.1_1_10:107445275-107445446:-|nuORF	REV__ENST00000450091.1_1_10:107445275-107445446:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	810.3992093662001	1	810.399209	809.391933	1.3224	0.0010717	6.1352	0.0049719	7.4576	0.0060436	810.4043372994101	27.928	0.096504	27.919	27.87	27.967	-0.009552	462	61	1.3447032	0.035819888	1.3431838	273.88998	0	7.2958374						142	5	2	NaN	NaN	NaN	0.78264	1	4785	4785		11.548	0.94349	1	14519	+		3528	10448	2065	2099	2780	2780					-0.02038738953376651
EHAHAAWLQ	9	Unmodified	_EHAHAAWLQ_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7594151246	2	531.759415	1061.50428	1.08	0.00057427	2.2844	0.0012147	3.3643	0.001789	532.263374699472	35.36	0.048244	35.361	35.336	35.385	0.00053024	1284	28	0.8468043	0.016597629	0.8452849	343.58096	0	6.7342834						43	3	2	NaN	NaN	NaN	0.66529	1	10922	10922		2.1763	1.1043	1	3147.7	+		3529	10857	2066	2100	2781	2781					-0.024014651565494205
EHCREGAL	8	Unmodified	_EHCREGAL_					0	0	0			REV__ENST00000367545.7_1_6:144745189-144747475:+|nuORF	REV__ENST00000367545.7_1_6:144745189-144747475:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4148762054	1	914.414876	913.4076	2.1376	0.0019546	-6.9073	-0.0063161	-4.7697	-0.0043615	914.4084065459317	36.348	0.12038	36.35	36.302	36.422	0.0016747	363	43	1.4036897	0.024980664	1.4021703	285.36063	0	5.0783997						84	6	2	NaN	NaN	NaN	0.7718	1	6168	6168		13.003	1.4544	1	5218.1	+		3530	11863	2067	2101	2782	2782					-0.05256775707982797
EHCREGAL	8	Unmodified						0	0	0			REV__ENST00000367545.7_1_6:144745189-144747475:+|nuORF	REV__ENST00000367545.7_1_6:144745189-144747475:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	914.414876	913.4076	2.1376	0.0019546	-6.9073	-0.0063161	-4.7697	-0.0043615	914.4084065459317	36.348	0.12038	36.35	36.302	36.422	0.0016747	363	43	1.4036897	0.024980664	1.4021703	285.36063		5.0783997	-4.9137E-05	0.0010423	0.00013249	NaN	13.003	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5218.1	+		3531	11863	2067	2101							-0.05256775707982797
EHDFRQNIKK	10	Unmodified	_EHDFRQNIKK_					0	0	0			REV__nc|ENSG00000131781|P49326-2|FMO5	REV__nc|ENSG00000131781|P49326-2|FMO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8492927643999	2	657.849293	1313.68403	0.66826	0.00043961	5.6381	0.003709	6.3063	0.0041486	658.3545875563387	33.502	0.096519	33.501	33.476	33.573	-0.0018463	1209	58	0.892844	0.034933507	0.8913246	361.36893	0	14.138977						144	5	4	NaN	NaN	NaN	0.77513	1	18166	18166		1.7022	0	1	8304.4	+		3532	9518	2068	2102	2783	2783					0.039737940605846234
EHETDTIYY	9	Unmodified	_EHETDTIYY_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.83650439269996	3	390.836504	1169.48768	1.0667	0.00041691	-5.4219	-0.0021191	-4.3552	-0.0017022	390.83442009526146	12.412	0.071899	12.412	12.364	12.436	0	1452	40	0.74322224	0.024122834	0.74322224	451.7908	0	14.663818						64	4	2	NaN	NaN	NaN	0.31471	1	15460	15460		17.97	12.953	1	5456.9			3533	3211	2069	2103	2784	2784					-0.09028055623798537
EHETDTIYY	9	Unmodified						0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	390.836504	1169.48768	1.7751	0.00069378	-3.0076	-0.0011755	-1.2325	-0.00048169	390.83563643200296	12.39	0.095984	12.381	12.357	12.453	-0.0088415	1455	31	0.7413668	0.018555045	0.73984736	450.66293		11.279266	-0.015519	0.0020223	-0.0016874	NaN	17.97	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3525.7			3534	3211	2069	2103							-0.09028055623798537
EHGDQDYIW	9	Unmodified	_EHGDQDYIW_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.74362767465	2	581.743628	1161.4727	2.0599	0.0011984	-2.1809	-0.0012687	-0.12091	-7.0341E-05	581.7426174039542	22.019	0.28934	22.019	21.97	22.26	0	1266	52	0.85786515	0.03132391	0.85786515	347.68484	0	12.6953125						321	13	3	NaN	NaN	NaN	0.12328	1	15189	15189		32.453	9.1183	1	49507			3535	3230	2070	2104	2785	2785					-0.10157502701144949
EHGDQDYIW	9	Unmodified	_EHGDQDYIW_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.74362767465	2	581.743628	1161.4727	1.3864	0.00080655	-1.124	-0.00065388	0.26243	0.00015267	581.7429844340984	22.042	0.16858	22.029	21.956	22.125	-0.013731	1266	73	0.85786515	0.044210076	0.8563457	347.68484	0	17.917908						263	8	3	NaN	NaN	NaN	0.089764	1	14672	14672		37.302	19.503	1	46488			3536	3230	2070	2104	2786	2786					-0.10157502701144949
EHGGIIEETGA	11	Unmodified	_EHGGIIEETGA_					0	0	0			REV__nc|ENSG00000100450|P20718-3|GZMH	REV__nc|ENSG00000100450|P20718-3|GZMH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.764560082	2	556.76456	1111.51457	2.0324	0.0011316	-8.6955	-0.0048413	-6.663	-0.0037097	556.7609557050002	16.515	0.11983	16.502	16.478	16.598	-0.012993	1281	49	0.84864825	0.029492497	0.8471288	344.1307	0	11.959351						88	6	2	NaN	NaN	NaN	0.62211	1	12956	12956		12.57	0.83085	1	6458.1	+		3537	8821	2071	2105	2787	2787					-0.036729470126147135
EHGGSCRG	8	Unmodified	_EHGGSCRG_					0	0	0		ENST00000370996.4_1_20:58514954-58515329:-|nuORF	ENST00000370996.4_1_20:58514954-58515329:-|nuORF	ENST00000370996.4_1_20:58514954-58515329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.66666883235	2	401.666669	801.318785	1.4388	0.00057792	-7.3416	-0.0029489	-5.9028	-0.002371	401.66360164231656	28.122	0.048252	28.122	28.098	28.146	0	1449	34	0.74507743	0.020404935	0.74507743	303.56033	0	8.313416						59	3	3	NaN	NaN	NaN	0.84455	1	4758	4758		2.7852	0.60885	1	4978.3			3538	6652	2072	2106	2788	2788					-0.08982190947642721
EHILCSGSV	9	Unmodified	_EHILCSGSV_					0	0	0			REV__ENSG00000188295|ENST00000448299|ZNF669	REV__ENSG00000188295|ENST00000448299|ZNF669	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.72893473815003	2	472.728935	943.443317	2.5415	0.0012014	0.6795	0.00032122	3.221	0.0015227	472.730692721064	19.444	0.023983	19.444	19.444	19.468	0	1371	22	0.79324204	0.012949824	0.79324204	322.364	0	5.262665						19	2	2	NaN	NaN	NaN	0.67989	1	6896	6896		0.92586	0.23471	1	765.38	+		3539	11052	2073	2107	2789	2789					-0.03066738250970502
EHILCSGSV	9	Unmodified						0	0	0			REV__ENSG00000188295|ENST00000448299|ZNF669	REV__ENSG00000188295|ENST00000448299|ZNF669	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	472.728935	943.443317	2.5415	0.0012014	0.6795	0.00032122	3.221	0.0015227	472.730692721064	19.444	0.023983	19.444	19.444	19.468	0	1371	22	0.79324204	0.012949824	0.79324204	322.364		5.262665	0	0	0	NaN	0.92586	19	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765.38	+		3540	11052	2073	2107							-0.03066738250970502
EHLIWLIT	8	Unmodified	_EHLIWLIT_					0	0	0		ENST00000432471.6_2_8:38068046-38068208:+|nuORF	ENST00000432471.6_2_8:38068046-38068208:+|nuORF	ENST00000432471.6_2_8:38068046-38068208:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.79493496365	2	512.794935	1023.57532	1.9606	0.0010054	-2.5876	-0.0013269	-0.62702	-0.00032153	512.7939876914178	27.953	0.096504	27.953	27.929	28.026	0	1257	43	0.86339295	0.025791943	0.86339295	350.47784	0	10.469788						86	5	2	NaN	NaN	NaN	0.75561	1	9528	9528		15.175	6.0522	1	13154			3541	6976	2074	2108	2790	2790					0.06447234828260662
EHLLHGGQ	8	Unmodified	_EHLLHGGQ_					0	0	0		CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant;ENSG00000166664|ENST00000299847|CHRFAM7A;ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7	CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant	CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4478908933002	1	890.447891	889.440614	1.7375	0.0015472	-8.4054	-0.0074846	-6.6679	-0.0059374	890.4402051239034	28.653	0.072367	28.653	28.653	28.725	0	366	73	1.4019053	0.04284215	1.4019053	285.11185	0	8.713013						126	4	3	NaN	NaN	NaN	0.65075	1	5927	5927		22.126	1.5709	1	15101			3542	159	2075	2109	2791	2791					-0.008528255936198548
EHLLHGGQ	8	Unmodified	_EHLLHGGQ_					0	0	0		CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant;ENSG00000166664|ENST00000299847|CHRFAM7A;ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7	CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant	CHRNA7|p.P427L|1|0.27|ENSG00000175344|chr15:32168229-32168229|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.4478908933002	1	890.447891	889.440614	1.2392	0.0011034	-7.0304	-0.0062602	-5.7912	-0.0051568	890.4409400634821	28.701	0.096542	28.692	28.644	28.74	-0.0083504	366	61	1.4019053	0.035690427	1.4003859	285.11185	0	7.258545						145	5	3	NaN	NaN	NaN	0.65075	1	5807	5807		22.126	4.3274	1	13914			3543	159	2075	2109	2792	2792					-0.008528255936198548
EHLNYVTEI	9	Unmodified	_EHLNYVTEI_					0	0	0		nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1117.5524155443	1	1117.55242	1116.54514	1.4825	0.0016568	0.86901	0.00097116	2.3515	0.0026279	1117.5541178380288	31.911	0.096561	31.911	31.887	31.983	0	66	73	1.579413	0.04239881	1.579413	320.21536	0	8.5961						134	5	2	NaN	NaN	NaN	0.33629	1	13527	13527		16.584	1.4088	1	9477.2			3544	7958	2076	2110	2793	2793					-0.00847168627569772
EHLQSKKIF	9	Unmodified	_EHLQSKKIF_					0	0	0			REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.2169909594666	3	377.216991	1128.62914	1.6153	0.00060932	-1.6193	-0.00061082	-0.0039728	-1.4986E-06	377.2159231998499	22.982	0.096426	22.969	22.921	23.017	-0.01354	1446	91	0.7469324	0.055652976	0.74541295	454.23737	0	33.844635						221	5	3	NaN	NaN	NaN	0.56671	1	13601	13601		3.9281	0.34868	1	24641	+		3545	9430	2077	2111	2794	2794					0.06997407259973443
EHMQEKLLEV	10	Unmodified	_EHMQEKLLEV_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.3211878914	2	628.321188	1254.62782	0.99206	0.00062333	4.0223	0.0025273	5.0144	0.0031506	628.3241023214523	27.639	0.096497	27.629	27.605	27.702	-0.009552	1140	52	0.93509084	0.031192243	0.9335714	378.65326	0	12.63092						119	5	3	NaN	NaN	NaN	0.73444	1	17125	17125		5.6942	1.7661	1	9688.3			3546	4179	2078	2112	2795	2795					0.010694051089103596
EHMQEKLLEV	10	Unmodified						0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	628.321188	1254.62782	1.4612	0.00091813	5.4295	0.0034115	6.8907	0.0043296	628.3240146845791	27.615	0.096479	27.615	27.591	27.688	0	1146	43	0.93142134	0.025686324	0.93142134	377.16733		10.401337	-0.0068869	0.00072771	-0.001075	NaN	5.6942	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9312			3547	4179	2078	2112							0.010694051089103596
EHPITLAI	8	Unmodified	_EHPITLAI_					0	0	0		ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ENSG00000068650|ENST00000375645|ATP11A	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENST00000459908.5_1_13:113439469-113512287:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.25818531659996	2	447.258185	892.501818	1.2226	0.00054681	-0.84282	-0.00037696	0.37977	0.00016985	447.2579026643418	21.585	0.16869	21.585	21.537	21.705	0	1341	64	0.8117308	0.038815916	0.8117308	330.14783	0	15.787231						242	8	3	NaN	NaN	NaN	0.40747	1	5957	5957		36.036	7.3698	1	57835			3548	732	2079	2113	2796	2796					0.05126686385801804
EHRDTRIHWYI	11	Unmodified	_EHRDTRIHWYI_					0	0	0			REV__ENST00000424120.5_2_4:15554859-15556796:+|nuORF	REV__ENST00000424120.5_2_4:15554859-15556796:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3865737277001	2	763.386574	1524.75859	1.2253	0.00093538	6.975	0.0053246	8.2003	0.00626	763.391933957484	30.076	0.12068	30.07	30.021	30.142	-0.0064087	981	70	1.0320443	0.041942835	1.0305248	417.10635	0	16.951477						269	6	3	NaN	NaN	NaN	0.35694	1	19627	19627		31.198	15.735	1	25477	+		3549	12120	2080	2114	2797	2797					0.017205568719873554
EHSYHVEETVS	11	Unmodified	_EHSYHVEETVS_					0	0	0		nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.79130614875	2	658.791306	1315.56806	1.1588	0.00076343	-7.7143	-0.0050821	-6.5554	-0.0043187	658.787440197837	29.425	0.14475	29.425	29.329	29.474	0	1143	67	0.9332562	0.0403468	0.9332562	377.71976	0	16.329712						170	7	3	NaN	NaN	NaN	0.7072	1	19033	19033		6.9844	1.0646	1	22796			3550	5773	2081	2115	2798	2798					-0.07710194300761941
EHTYDVEL	8	Unmodified	_EHTYDVEL_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.4523671487001	1	1005.45237	1004.44509	2.0703	0.0020816	4.8074	0.0048336	6.8777	0.0069152	1005.4571849081924	23.417	0.072365	23.417	23.393	23.465	0	249	46	1.4713576	0.026655674	1.4713576	298.7142	0	5.411621						69	4	2	NaN	NaN	NaN	0.72043	1	8753	8753		17.78	6.2319	1	4989.4	+		3551	9807	2082	2116	2799	2799					-0.05695405961364486
EHVHTKNF	8	Unmodified	_EHVHTKNF_					0	0	0		ENST00000563423.2_1_15:37109670-37110018:-|nuORF	ENST00000563423.2_1_15:37109670-37110018:-|nuORF	ENST00000563423.2_1_15:37109670-37110018:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5006547453002	1	1011.50065	1010.49338	1.7265	0.0017464	-1.6777	-0.001697	0.048825	4.9387E-05	1011.4999849377498	28.797	0.072384	28.789	28.74	28.813	-0.0083504	285	70	1.4500183	0.040902376	1.4484988	294.3581	0	8.303314						76	4	2	NaN	NaN	NaN	0.81251	1	8819	8819		7.5404	1.8462	1	5621.8			3552	7612	2083	2117	2800	2800					-0.01144867530808824
EHVNQYEKS	9	Unmodified	_EHVNQYEKS_					0	0	0			REV__nc|ENSG00000118985|O00472-2|ELL2	REV__nc|ENSG00000118985|O00472-2|ELL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2647272575	2	567.264727	1132.5149	0.63724	0.00036148	7.1102	0.0040334	7.7474	0.0043948	567.2670969068183	32.031	0.096506	32.027	31.979	32.075	-0.0037613	1224	55	0.883646	0.03313607	0.88212657	358.24097	0	13.433746						101	5	3	NaN	NaN	NaN	0.31737	1	13721	13721		17.799	2.6236	1	11412	+		3553	9278	2084	2118	2801	2801					-0.04605527292778788
EHVQYMAEL	9	Unmodified	_EHVQYMAEL_					0	0	0		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2605990073	2	560.260599	1118.50665	1.8789	0.0010527	5.3261	0.002984	7.205	0.0040367	560.2641105902226	24.067	0.21713	24.055	24.006	24.224	-0.012749	1215	97	0.8891654	0.058876753	0.88764596	360.5329	0	23.872955						700	10	5	NaN	NaN	NaN	0.33202	1	13204	13204		16.858	0.27415	1	304850			3554	1867	2085	2119	2802	2802					-0.04786797533756726
EHYWEVRYEP	10	Unmodified	_EHYWEVRYEP_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3200337984501	2	704.320034	1406.62551	1.0016	0.00070548	-3.2327	-0.0022768	-2.231	-0.0015714	704.3178572663514	34.3	0.07235	34.3	34.276	34.348	0	1056	40	0.9863805	0.023775876	0.9863805	398.9522	0	9.616394						58	4	2	NaN	NaN	NaN	0.65442	1	20112	20112		11.17	5.9815	1	4370.9			3555	1522	2086	2120	2803	2803					-0.061533073045211495
EIAAVIETV	9	Unmodified	_EIAAVIETV_					0	0	0		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5298891882001	1	944.529889	943.522613	1.5867	0.0014987	-2.2203	-0.0020971	-0.63354	-0.0005984	944.5267574773128	26.601	0.12068	26.601	26.601	26.722	0	330	103	1.4233059	0.060557723	1.4233059	289.2113	0	12.305145						180	6	2	NaN	NaN	NaN	0.023828	1	6912	6912		67.154	22.516	1	20104			3556	5543	2087	2121	2804	2804					0.048592319748081536
EIAAVIETV	9	Unmodified	_EIAAVIETV_					0	0	0		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5298891882001	1	944.529889	943.522613	1.3331	0.0012592	-2.3627	-0.0022317	-1.0296	-0.0009725	944.5271379405996	26.625	0.12066	26.614	26.59	26.711	-0.010643	327	91	1.425088	0.053427577	1.4235686	289.57343	0	10.856323						172	6	2	NaN	NaN	NaN	0.042816	1	6774	6774		49.961	15.523	1	19857			3557	5543	2087	2121	2805	2805					0.048592319748081536
EIAQCEVF	8	Unmodified	_EIAQCEVF_					0	0	0		ENST00000539405.1_1_13:111303270-111319801:-|nuORF;ENST00000535398.5_1_13:111298395-111353838:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000539405.1_1_13:111303270-111319801:-|nuORF	ENST00000539405.1_1_13:111303270-111319801:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4287949351001	1	938.428795	937.421518	1.9418	0.0018223	-3.5872	-0.0033663	-1.6454	-0.0015441	938.4255536531002	24.26	0.16889	24.248	24.127	24.296	-0.012749	378	148	1.3947657	0.08739984	1.3932463	283.43857	0	17.761047						341	8	3	NaN	NaN	NaN	0.23625	1	6620	6620		47.136	2.4973	1	71699			3558	2907	2088	2122	2806	2806					-0.04969542999549503
EIAQETEQ	8	Unmodified	_EIAQETEQ_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.21945408659997	2	474.219454	946.424355	1.5153	0.0007186	-8.3841	-0.0039759	-6.8688	-0.0032573	474.2153746844778	16.398	0.11992	16.398	16.35	16.47	0	1350	40	0.80618626	0.02403146	0.80618626	327.60962	0	9.7656555						92	6	3	NaN	NaN	NaN	0.7718	1	6983	6983		13.003	3.8796	1	6788.4	+		3559	9317	2089	2123	2807	2807					-0.05099996341039059
EIAQETEQ	8	Unmodified						0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.219454	946.424355	1.5153	0.0007186	-8.3841	-0.0039759	-6.8688	-0.0032573	474.2153746844778	16.398	0.11992	16.398	16.35	16.47	0	1350	40	0.80618626	0.02403146	0.80618626	327.60962		9.7656555	-0.0039375	-0.00043722	0.00075972	NaN	13.003	92	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6788.4	+		3560	9317	2089	2123							-0.05099996341039059
EIAQETEQ	8	Unmodified						0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	474.219454	946.424355	1.2905	0.000612	-7.6252	-0.003616	-6.3346	-0.003004	474.21623866324126	16.419	0.14387	16.406	16.334	16.478	-0.012995	1350	46	0.80618626	0.027734637	0.8046668	327.60962		11.270508	0.0039375	0.00028259	-0.00075972	NaN	13.003	113	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8848.7	+		3561	9317	2089	2123							-0.05099996341039059
EIASFDKAKLK	11	Unmodified	_EIASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.2432057099666	3	417.243206	1248.70779	1.5312	0.00063888	-3.5921	-0.0014988	-2.061	-0.00085992	417.24185196001696	15.174	0.14414	15.174	15.126	15.27	0	1416	67	0.76547134	0.040763497	0.76547134	464.9719	0	24.761047						209	7	3	NaN	NaN	NaN	0.29849	1	17750	17750		23.591	17.234	1	29914			3562	504	2090	2124	2808	2808					0.09338214774402331
EIASFDKAKLK	11	Unmodified	_EIASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.2432057099666	3	417.243206	1248.70779	1.1567	0.00048261	-1.4551	-0.00060714	-0.29846	-0.00012453	417.2424135282807	15.268	0.31196	15.256	15.088	15.4	-0.012202	1413	61	0.7673241	0.03706175	0.76580465	466.09732	0	22.512512						279	14	3	NaN	NaN	NaN	0.29849	1	17001	17001		19.32	7.853	1	31304			3563	504	2090	2124	2809	2809					0.09338214774402331
EICTGFVL	8	Unmodified	_EICTGFVL_					0	0	0			REV__CCDC110|p.R111C|2|0.21|ENSG00000168491|chr4:185461066-185461066|G/A|missense_variant	REV__CCDC110|p.R111C|2|0.21|ENSG00000168491|chr4:185461066-185461066|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.4437167178002	1	881.443717	880.43644	1.4479	0.0012763	1.6892	0.0014889	3.1371	0.0027652	881.4453071652573	27.109	0.096525	27.109	27.084	27.181	0	399	58	1.382264	0.033940196	1.382264	281.16107	0	6.903656						114	5	2	NaN	NaN	NaN	0.72043	1	5808	5808		17.78	4.0433	1	12534	+		3564	8180	2091	2125	2810	2810					-0.008560511315408803
EICTGFVL	8	Unmodified						0	0	0			REV__CCDC110|p.R111C|2|0.21|ENSG00000168491|chr4:185461066-185461066|G/A|missense_variant	REV__CCDC110|p.R111C|2|0.21|ENSG00000168491|chr4:185461066-185461066|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	881.443717	880.43644	1.4479	0.0012763	1.6892	0.0014889	3.1371	0.0027652	881.4453071652573	27.109	0.096525	27.109	27.084	27.181	0	399	58	1.382264	0.033940196	1.382264	281.16107		6.903656	-0.0066132	0.00040703	0.00075972	NaN	17.78	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12534	+		3565	8180	2091	2125							-0.008560511315408803
EIDAGELDI	9	Unmodified	_EIDAGELDI_					0	0	0			REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4676828619	1	974.467683	973.460406	1.6708	0.0016281	0.8686	0.00084643	2.5394	0.0024746	974.4696501624129	24.357	0.09656	24.344	24.32	24.417	-0.012747	318	46	1.4304334	0.026720881	1.428914	290.5309	0	5.427185						99	5	2	NaN	NaN	NaN	0.23112	1	7548	7548		23.334	0	1	8320.8	+		3566	13566	2092	2126	2811	2811					-0.02738539164181475
EIDAHLVAL	9	Unmodified	_EIDAHLVAL_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.77419952155	2	490.7742	979.533846	1.7357	0.00085186	-1.4767	-0.00072474	0.25902	0.00012712	490.7735967572899	21.633	0.12055	21.633	21.609	21.73	0	1329	43	0.81912065	0.02586186	0.81912065	332.70465	0	10.504364						123	6	3	NaN	NaN	NaN	0.23112	1	7871	7871		23.334	2.779	1	19274			3567	1283	2093	2127	2812	2812					0.04326054068940266
EIDAHLVAL	9	Unmodified						0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.7742	979.533846	1.0751	0.00052764	-1.0777	-0.00052891	-0.0026016	-1.2768E-06	490.7736031105854	21.657	0.14434	21.643	21.595	21.74	-0.013897	1332	40	0.8172735	0.02401328	0.81575406	331.95438		9.75354	0.005064	0.00016897	-0.0016833	NaN	23.334	133	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21725			3568	1283	2093	2127							0.04326054068940266
EIDEDRFK	8	Unmodified	_EIDEDRFK_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2563709091501	2	526.256371	1050.49819	1.1629	0.00061199	6.1591	0.0032413	7.3221	0.0038533	526.2590435975384	24.381	0.2653	24.381	24.333	24.598	0	1290	94	0.84311575	0.05713862	0.84311575	342.13028	0	23.186432						328	12	3	NaN	NaN	NaN	0.69898	1	10645	10645		19.118	2.5342	1	39098			3569	13992	2094	2128	2813	2813					-0.025040281787141794
EIDHDYER	8	Unmodified	_EIDHDYER_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.73580264255	2	538.735803	1075.45705	1.5539	0.00083715	-6.0103	-0.0032379	-4.4564	-0.0024008	538.7331268377126	24.791	0.048264	24.779	24.755	24.803	-0.012394	1323	37	0.8228144	0.022160053	0.82129496	333.7919	0	8.989716						56	3	2	NaN	NaN	NaN	0.84455	1	11461	11461		2.7852	0.86055	1	4764.5			3570	3081	2095	2129	2814	2814					-0.0776578921820601
EIDHDYER	8	Unmodified						0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.735803	1075.45705	1.6485	0.00088812	-5.5185	-0.002973	-3.87	-0.0020849	538.7338968392324	24.791	0.048269	24.791	24.767	24.816	0	1323	34	0.8228144	0.02031231	0.8228144	333.7919		8.240112	0.006283	0.00027107	0.00075972	NaN	2.7852	63	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5110.9			3571	3081	2095	2129							-0.0776578921820601
EIDLPREL	8	Unmodified	_EIDLPREL_					0	0	0		nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;MIA3|p.E645K|1|0.05|ENSG00000154305|chr1:222629153-222629153|G/A|missense_variant;MIA3|p.D636E|1|0.18|ENSG00000154305|chr1:222629128-222629128|T/A|missense_variant	nc|ENSG00000154305|Q5JRA6-2|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5360371986002	1	984.536037	983.528761	1.2129	0.0011941	3.9525	0.0038913	5.1653	0.0050854	984.5400251473783	33.287	0.1448	33.287	33.238	33.383	0	204	79	1.4979934	0.046156645	1.4979934	304.20935	0	9.373383						162	7	2	NaN	NaN	NaN	0.45125	1	8013	8013		33.698	6.9667	1	20949			3572	3838	2096	2130	2815	2815					0.03633750206347486
EIDPVECLV	9	Unmodified	_EIDPVECLV_					0	0	0		nc|ENSG00000106701|Q9BXM9-2|FSD1L;ENSG00000106701|ENST00000481272|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	nc|ENSG00000106701|Q9BXM9-2|FSD1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.4968745003	1	1016.49687	1015.4896	2.077	0.0021113	-0.28117	-0.00028581	1.7958	0.0018255	1016.4957154397408	29.377	0.21722	29.377	29.353	29.57	0	210	79	1.4944444	0.04614687	1.4944444	303.35663	0	9.36731						271	10	2	NaN	NaN	NaN	0.04947	1	9187	9187		47.136	7.677	1	58442			3573	1615	2097	2131	2816	2816					-0.017527181395507796
EIEDKDYLDI	10	Unmodified	_EIEDKDYLDI_					0	0	0			REV__nc|ENSG00000125885|Q9UJA3-2|MCM8	REV__nc|ENSG00000125885|Q9UJA3-2|MCM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.80080820255	2	626.800808	1251.58706	0.39775	0.00024931	-1.788	-0.0011207	-1.3902	-0.00087141	626.7996094584378	33.695	0.2172	33.694	33.621	33.838	-0.0018501	1158	88	0.92408	0.053198814	0.9225606	374.2045	0	21.542786						276	10	2	NaN	NaN	NaN	0.5917	1	17052	17052		15.463	1.0377	1	38418	+		3574	9407	2098	2132	2817	2817					-0.028666577297144613
EIEEFVIIG	9	Unmodified	_EIEEFVIIG_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7816902026501	2	524.78169	1047.54883	0.58144	0.00030513	-1.1209	-0.00058825	-0.5395	-0.00028312	524.7815991908732	31.477	0.07238	31.477	31.452	31.525	0	1254	55	0.8652351	0.033168256	0.8652351	351.11896	0	13.45993						114	4	3	NaN	NaN	NaN	0.20577	1	10534	10534		24.961	4.4056	1	13621			3575	13821	2099	2133	2818	2818					0.02695501146308743
EIEENGERYG	10	Unmodified	_EIEENGERYG_					0	0	0		tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	tr|U7SPT9|U7SPT9_FUSNUFusobacteriummembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01700PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.1790416373667	3	399.179042	1194.5153	0.83693	0.00033409	8.7526	0.0034939	9.5895	0.0038279	399.18318151363223	33.624	0.048275	33.624	33.6	33.648	0	1455	25	0.7413668	0.014844	0.7413668	450.55295	0	9.021179						33	3	2	NaN	NaN	NaN	0.75466	1	16283	16283		2.0359	0.53045	1	1969.4			3576	13802	2100	2134	2819	2819					-0.07418152363561603
EIEGNVFM	8	Unmodified	_EIEGNVFM_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.4287949351002	1	938.428795	937.421518	1.668	0.0015653	-3.1137	-0.002922	-1.4457	-0.0013567	938.4257911575468	28.122	0.12064	28.122	28.122	28.243	0	345	85	1.4143922	0.049966574	1.4143922	287.427	0	10.154022						150	6	2	NaN	NaN	NaN	0.63138	1	6762	6762		23.334	0	1	16013			3577	7927	2101	2135	2820	2820					-0.049695429995381346
EIELLSIL	8	Unmodified	_EIELLSIL_					0	0	0		ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.5553756572002	1	929.555376	928.548099	1.4945	0.0013892	-0.14263	-0.00013258	1.3519	0.0012567	929.5550237527468	32.852	0.0965	32.852	32.804	32.9	0	285	55	1.4500183	0.032025933	1.4500183	294.70752	0	6.5090637						119	5	2	NaN	NaN	NaN	0.028839	1	6567	6567		87.795	0	1	16149			3578	5235	2102	2136	2821	2821					0.08096706497246942
EIELLSIL	8	Unmodified						0	0	0		ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	929.555376	928.548099	0.85036	0.00079046	-0.87855	-0.00081666	-0.028192	-2.6206E-05	929.5548699126241	32.851	0.072369	32.848	32.8	32.872	-0.0031052	282	52	1.4517976	0.030245066	1.4502782	295.06915		6.147156	-0.0020733	-0.00037111	0.00012994	NaN	87.795	133	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13962			3579	5235	2102	2136							0.08096706497246942
EIEMIMSSE	9	Unmodified	_EIEMIMSSE_					0	0	0			REV__ENSG00000135108|ENST00000622495|FBXO21	REV__ENSG00000135108|ENST00000622495|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.4587744345001	1	1068.45877	1067.4515	0.85869	0.00091748	8.6419	0.0092335	9.5006	0.010151	1068.4675554010985	29.69	0.193	29.683	29.659	29.852	-0.0070648	108	55	1.5546752	0.031829476	1.5531558	315.37692	0	6.4568176						181	9	2	NaN	NaN	NaN	0.23112	1	11160	11160		23.334	4.2161	1	18657	+		3580	9606	2103	2137	2822	2822					-0.07952972116504498
EIFFVKDCP	9	Unmodified	_EIFFVKDCP_					0	0	0		ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ENST00000524290.1_1_8:77690527-77745707:+|nuORF	ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2704354121	2	549.270435	1096.52632	1.9839	0.0010897	2.2169	0.0012177	4.2008	0.0023074	549.2712266306404	18.146	0.096027	18.132	18.108	18.204	-0.013948	1248	70	0.8689189	0.04235655	0.86739945	352.40945	0	17.17862						210	5	3	NaN	NaN	NaN	0.49672	1	12357	12357		9.746	0.78402	1	22718			3581	1081	2104	2138	2823	2823					-0.01808421522991921
EIFTEQVVTA	10	Unmodified	_EIFTEQVVTA_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7953288941501	2	568.795329	1135.5761	1.7803	0.0010126	-3.6956	-0.0021021	-1.9154	-0.0010895	568.7937310485386	23.706	0.14463	23.693	23.669	23.813	-0.013048	1203	70	0.8965218	0.042297065	0.89500237	363.44925	0	17.147186						356	7	6	NaN	NaN	NaN	0.72369	1	13832	13832		6.4299	1.2411	1	155360			3582	1678	2105	2139	2824	2824					0.01373984686665608
EIFTEQVVTA	10	Unmodified						0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.795329	1135.5761	2.1553	0.0012259	-3.8394	-0.0021838	-1.6842	-0.00095794	568.7934079584688	23.682	0.24093	23.682	23.61	23.851	0	1203	64	0.8965218	0.03861904	0.8965218	363.44925		15.656128	-0.0053857	-8.9224E-05	0.00075972	NaN	6.4299	354	11	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148000			3583	1678	2105	2139							0.01373984686665608
EIGAGTGLVSI	11	Unmodified	_EIGAGTGLVSI_					0	0	0		nc|ENSG00000250878|A6NDL7|METTL21EP;ENST00000298105.7_1_13:103543811-103548031:+|nuORF	nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.78476420785006	2	508.784764	1015.55498	2.4022	0.0012222	-1.3888	-0.00070661	1.0134	0.00051558	508.7842036023211	18.628	0.047958	18.628	18.604	18.652	0	1320	37	0.824661	0.022157669	0.824661	334.79044	0	8.995422						68	3	3	NaN	NaN	NaN	0.48069	1	9210	9210		19.164	1.1939	1	7437.2			3584	8049	2106	2140	2825	2825					0.04782019377819324
EIGFVADNVEV	11	Unmodified	_EIGFVADNVEV_					0	0	0			REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.29823572385	2	596.298236	1190.58192	1.4432	0.00086057	-6.5797	-0.0039235	-5.1365	-0.0030629	596.2949224702979	19.924	0.09623	19.924	19.9	19.997	0	1263	58	0.85970795	0.03499019	0.85970795	348.33173	0	14.177124						122	5	3	NaN	NaN	NaN	0.72342	1	16165	16165		5.9198	0	1	10391	+		3585	13578	2107	2141	2826	2826					-0.005749168016791373
EIGFVADNVEV	11	Unmodified						0	0	0			REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.298236	1190.58192	1.4432	0.00086057	-6.5797	-0.0039235	-5.1365	-0.0030629	596.2949224702979	19.924	0.09623	19.924	19.9	19.997	0	1263	58	0.85970795	0.03499019	0.85970795	348.33173		14.177124	-0.004584	0.00062437	0.00075972	NaN	5.9198	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10391	+		3586	13578	2107	2141							-0.005749168016791373
EIGFVADNVEV	11	Unmodified						0	0	0			REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	REV__tr|U7T299|U7T299_FUSNULargeribosomalsubunitproteinuL4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplDPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	596.298236	1190.58192	1.1744	0.00070028	-8.549	-0.0050977	-7.3746	-0.0043975	596.2920946503147	19.948	0.072289	19.934	19.909	19.982	-0.014141	1263	97	0.85970795	0.058895826	0.8581885	348.33173		23.863068	0.004584	-0.0017242	-0.00075972	NaN	5.9198	137	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10882	+		3587	13578	2107	2141							-0.005749168016791373
EIGLTSEEI	9	Unmodified	_EIGLTSEEI_					0	0	0		ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000189134|ENST00000343684|NKAPL;ENSG00000101882|ENST00000371410|NKAP	ENST00000477789.5_1_X:119059185-119070773:-|nuORF	ENST00000477789.5_1_X:119059185-119070773:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4989829903001	1	990.498983	989.491707	2.2077	0.0021868	-0.26243	-0.00025994	1.9453	0.0019268	990.4972234500722	22.621	0.048241	22.621	22.621	22.67	0	234	88	1.4802408	0.051523328	1.4802408	300.5792	0	10.462372						127	3	2	NaN	NaN	NaN	0.055351	1	8189	8189		44.638	7.3361	1	12378			3588	1350	2108	2142	2827	2827					-0.0034596613008943677
EIGTTGGS	8	Unmodified	_EIGTTGGS_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3362747584002	1	721.336275	720.328998	2.2665	0.0016349	6.1421	0.0044305	8.4086	0.0060655	721.3408969695122	23.248	0.31368	23.234	23.162	23.476	-0.013294	636	196	1.2405256	0.11733258	1.2390062	253.19168	0	23.947617						1085	14	4	NaN	NaN	NaN	0.76633	1	3521	3521		13.737	0	1	523520	+		3589	8770	2109	2143	2828	2828					-0.042353047414053435
EIGTTGGS	8	Unmodified						0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	721.336275	720.328998	2.2247	0.0016048	6.0626	0.0043732	8.2873	0.005978	721.3408761743597	23.248	0.40987	23.248	23.176	23.586	0	636	178	1.2405256	0.10649049	1.2405256	253.19168		21.734726	0.0069117	-2.9969E-05	0.00075972	NaN	13.737	1143	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528580	+		3590	8770	2109	2143							-0.042353047414053435
EIGTTGGS	8	Unmodified						0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.336275	720.328998	2.2665	0.0016349	6.1421	0.0044305	8.4086	0.0060655	721.3408969695122	23.248	0.31368	23.234	23.162	23.476	-0.013294	636	196	1.2405256	0.11733258	1.2390062	253.19168		23.947617	-0.0069117	2.7391E-05	-0.00075972	NaN	13.737	1085	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523520	+		3591	8770	2109	2143							-0.042353047414053435
EIHSGASK	8	Unmodified	_EIHSGASK_					0	0	0			REV__COL6A3|p.R1535H|1|0.15|ENSG00000163359|chr2:237368859-237368859|C/T|missense_variant	REV__COL6A3|p.R1535H|1|0.15|ENSG00000163359|chr2:237368859-237368859|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.4210074408002	1	828.421007	827.413731	1.7148	0.0014206	-9.3758	-0.0077671	-7.661	-0.0063465	828.4131644651656	26.215	0.193	26.204	26.18	26.373	-0.011137	408	64	1.3769034	0.037532926	1.375384	280.34668	0	7.6419373						258	9	3	NaN	NaN	NaN	0.74229	1	4991	4991		16.417	1.2413	1	33724	+		3592	8249	2110	2144	2829	2829					-0.006879342048023318
EIHSGASK	8	Unmodified						0	0	0			REV__COL6A3|p.R1535H|1|0.15|ENSG00000163359|chr2:237368859-237368859|C/T|missense_variant	REV__COL6A3|p.R1535H|1|0.15|ENSG00000163359|chr2:237368859-237368859|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	828.421007	827.413731	1.7148	0.0014206	-9.3758	-0.0077671	-7.661	-0.0063465	828.4131644651656	26.215	0.193	26.204	26.18	26.373	-0.011137	408	64	1.3769034	0.037532926	1.375384	280.34668		7.6419373	-0.017745	3.9759E-05	-0.00075972	NaN	16.417	258	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33724	+		3593	8249	2110	2144							-0.006879342048023318
EIIEQLLTM	9	Unmodified	_EIIEQLLTM_					0	0	0			REV__ENST00000506857.5_1_5:61645920-61649125:+|nuORF	REV__ENST00000506857.5_1_5:61645920-61649125:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2966501626	2	545.29665	1088.57875	1.4864	0.00081053	-8.7589	-0.0047762	-7.2725	-0.0039657	545.2924481094634	24.502	0.096596	24.489	24.417	24.513	-0.012747	1257	64	0.86339295	0.038681686	0.8618735	350.20004	0	15.689636						96	5	2	NaN	NaN	NaN	0.54912	1	12025	12025		7.5876	0.047225	1	7803.8	+		3594	12539	2111	2145	2830	2830					0.03800116819957111
EIIEQPKQR	9	Unmodified	_EIIEQPKQR_					0	0	0		ENST00000534305.1_1_11:65429156-65429584:-|nuORF;ENST00000525858.5_1_11:65429156-65430414:-|nuORF;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000534305.1_1_11:65429156-65429584:-|nuORF	ENST00000534305.1_1_11:65429156-65429584:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.88390038663334	3	380.8839	1139.62987	1.9526	0.00074372	-2.9113	-0.0011089	-0.95866	-0.00036514	380.8825695317564	12.774	0.048019	12.765	12.741	12.789	-0.00947	1452	31	0.74322224	0.018552959	0.7417028	451.9285	0	11.281433						45	3	2	NaN	NaN	NaN	0.63796	1	13974	13974		3.9281	0.34868	1	3002.4			3595	4868	2112	2146	2831	2831					0.06564201909031908
EIIEQPRQR	9	Unmodified	_EIIEQPRQR_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8252863518501	2	584.825286	1167.63602	1.4596	0.00085358	-1.5352	-0.00089781	-0.075624	-4.4227E-05	584.8247701266141	12.916	0.096121	12.916	12.892	12.988	0	1206	34	0.894683	0.020226836	0.894683	362.5843	0	8.197266						60	5	2	NaN	NaN	NaN	0.38313	1	15411	15411		14.425	1.4222	1	4834.6			3596	4190	2113	2147	2832	2832					0.05890720140564554
EIIEQRPRQ	9	Unmodified	_EIIEQRPRQ_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.2192830567667	3	390.219283	1167.63602	1.4731	0.00057483	-0.4812	-0.00018777	0.99189	0.00038705	390.2185771747342	12.942	0.095873	12.933	12.909	13.004	-0.00947	1440	34	0.7506418	0.020396113	0.7491224	456.30942	0	12.398651						67	5	2	NaN	NaN	NaN	0.084037	1	14877	14877		33.907	12.057	1	5158.1	+		3597	8748	2114	2148	2833	2833					0.05890720140564554
EIILKELLKL	10	Unmodified	_EIILKELLKL_					0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1211.7973372631	1	1211.79734	1210.79006	2.1346	0.0025867	3.9761	0.0048182	6.1106	0.0074049	1211.8030222660777	39.189	0.55354	39.189	39.117	39.67	0	51	130	1.5882392	0.07598472	1.5882392	321.69846	0	15.390747						1907	24	4	NaN	NaN	NaN	0.66626	1	16745	16745		10.36	2.7726	1	295900	+		3598	13521	2115	2149	2834	2834					0.1930973685336994
EIILKELLKL	10	Unmodified						0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1211.79734	1210.79006	2.1346	0.0025867	3.9761	0.0048182	6.1106	0.0074049	1211.8030222660777	39.189	0.55354	39.189	39.117	39.67	0	51	130	1.5882392	0.07598472	1.5882392	321.69846		15.390747	0.010752	9.4452E-05	0.00075972	NaN	10.36	1907	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295900	+		3599	13521	2115	2149							0.1930973685336994
EIILKELLKL	10	Unmodified						0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1211.79734	1210.79006	2.043	0.0024757	3.8298	0.0046409	5.8728	0.0071166	1211.8024245577035	39.163	0.55347	39.168	39.095	39.649	0.0046806	51	154	1.5882392	0.090159655	1.5867198	321.69846		18.261902	-0.010752	-8.2829E-05	-0.00075972	NaN	10.36	1843	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271570	+		3600	13521	2115	2149							0.1930973685336994
EIIVLMPILP	10	Unmodified	_EIIVLMPILP_					0	0	0			REV__ENSG00000198899|ENST00000361899|MT-ATP6	REV__ENSG00000198899|ENST00000361899|MT-ATP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3512284220501	2	569.351228	1136.6879	1.1311	0.000644	-2.7965	-0.0015922	-1.6654	-0.00094819	569.349889720699	43.391	0.0718	43.402	43.33	43.402	0.010994	1155	31	0.92591566	0.018357277	0.9243962	375.36108	0	7.441925						42	4	2	NaN	NaN	NaN	0.56921	1	13884	13884		16.584	1.1215	1	2815.8	+		3601	11202	2116	2150	2835	2835					0.1250274751012057
EIIVLMPILP	10	Unmodified						0	0	0			REV__ENSG00000198899|ENST00000361899|MT-ATP6	REV__ENSG00000198899|ENST00000361899|MT-ATP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.351228	1136.6879	1.9895	0.0011327	-5.6802	-0.003234	-3.6907	-0.0021013	569.3478580693761	43.393	0.071911	43.393	43.369	43.441	0	1161	19	0.9222442	0.011014402	0.9222442	373.8727		4.465149	-0.0045313	-0.001947	-0.001076	NaN	16.584	28	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289.7	+		3602	11202	2116	2150							0.1250274751012057
EIIVLMPILP	10	Unmodified						0	0	0			REV__ENSG00000198899|ENST00000361899|MT-ATP6	REV__ENSG00000198899|ENST00000361899|MT-ATP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.351228	1136.6879	1.1311	0.000644	-2.7965	-0.0015922	-1.6654	-0.00094819	569.349889720699	43.391	0.0718	43.402	43.33	43.402	0.010994	1155	31	0.92591566	0.018357277	0.9243962	375.36108		7.441925	0.0045313	0.0013367	0.001076	NaN	16.584	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2815.8	+		3603	11202	2116	2150							0.1250274751012057
EIIYHSTAERD	11	Unmodified	_EIIYHSTAERD_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.32277345265	2	667.322773	1332.63099	1.4398	0.0009608	-6.8149	-0.0045477	-5.3751	-0.0035869	667.3176869207631	30.487	0.14477	30.487	30.463	30.608	0	1128	64	0.9424274	0.03849417	0.9424274	381.3809	0	15.57782						268	7	4	NaN	NaN	NaN	0.63005	1	19298	19298		12.049	0.30984	1	38465	+		3604	11339	2117	2151	2836	2836					-0.022016285127165247
EIKGFYDPPR	10	Unmodified	_EIKGFYDPPR_					0	0	0		ENST00000490442.5_1_10:70098233-70101119:+|nuORF;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.316762828	2	611.316763	1220.61897	1.3362	0.00081681	-0.709	-0.00043342	0.62716	0.00038339	611.3163942589807	17.285	0.14397	17.285	17.141	17.285	0	1152	40	0.92775106	0.023860574	0.92775106	375.79504	0	9.664978						100	7	2	NaN	NaN	NaN	0.65742	1	16999	16999		10.965	6.236	1	6684.1			3605	1144	2118	2152	2837	2837					0.01748799534743739
EIKHFVSER	9	Unmodified	_EIKHFVSER_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.2084954698	3	382.208495	1143.60366	1.4086	0.00053836	0.86755	0.00033158	2.2761	0.00086995	382.2081966516576	12.34	0.047966	12.34	12.34	12.388	0	1413	25	0.7673241	0.014823079	0.7673241	466.5647	0	9.013062						46	3	3	NaN	NaN	NaN	0.34922	1	14591	14591		10.861	1.2498	1	2724.2			3606	5602	2119	2153	2838	2838					0.03759932737557392
EIKTPENDLQR	11	Unmodified	_EIKTPENDLQR_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8516980676001	2	671.851698	1341.68884	1.1666	0.00078379	5.2548	0.0035305	6.4214	0.0043142	671.8572022291482	30.317	0.072361	30.311	30.263	30.335	-0.0064087	1080	40	0.9717421	0.023798943	0.97022265	393.21664	0	9.630249						82	4	3	NaN	NaN	NaN	0.76803	1	18571	18571		2.3381	0.1618	1	5503.5			3607	7963	2120	2154	2839	2839					0.031666334127066875
EIKTPENDLQR	11	Unmodified						0	0	0		nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	671.851698	1341.68884	1.5671	0.0010529	2.659	0.0017864	4.2261	0.0028393	671.8535220135631	30.294	0.048256	30.294	30.27	30.318	0	1083	34	0.9699114	0.020137608	0.9699114	392.47586		8.148682	-0.0083651	-0.0019356	-0.00015562	NaN	2.3381	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3932.4			3608	7963	2120	2154							0.031666334127066875
EILAELMTL	9	Unmodified	_EILAELMTL_					0	0	0		tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5645601350002	1	1032.56456	1031.55728	1.4492	0.0014964	-2.5452	-0.0026281	-1.0959	-0.0011316	1032.5620350615022	34.734	0.096409	34.734	34.71	34.806	0	177	58	1.5139546	0.033670902	1.5139546	307.25287	0	6.833374						129	5	2	NaN	NaN	NaN	0.16171	1	9856	9856		27.789	2.8278	1	13866			3609	13833	2121	2155	2840	2840					0.042767317912876024
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.6190385465	1	1053.61904	1052.61176	1.3869	0.0014613	-0.92064	-0.00097	0.46627	0.00049127	1053.6175180980224	35.361	0.16884	35.361	35.313	35.482	0	117	76	1.5493695	0.044214606	1.5493695	314.3572	0	8.970856						308	8	3	NaN	NaN	NaN	0.0092442	1	10764	10764		93.929	2.3655	1	54367	+		3610	13463	2122	2156	2841	2841					0.08756066934324735
EINPLLELI	9	Unmodified	_EINPLLELI_					0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.31315750655	2	527.313158	1052.61176	0.54639	0.00028812	-1.52	-0.0008015	-0.97357	-0.00051338	527.3120429427511	35.36	0.16876	35.361	35.312	35.481	0.00053024	1245	76	0.87076044	0.046044707	0.869241	353.33914	0	18.684082						265	8	3	NaN	NaN	NaN	0.021751	1	10536	10536		69.782	14.369	1	36032	+		3611	13463	2122	2156	2842	2842					0.08756066934324735
EINPLLELI	9	Unmodified						0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.313158	1052.61176	0.72069	0.00038003	-1.6375	-0.00086346	-0.91677	-0.00048343	527.3122518306607	35.361	0.19297	35.361	35.313	35.506	0	1248	85	0.8689189	0.051578403	0.8689189	352.59186		20.929596	0.00038885	-5.9804E-05	-0.00016107	NaN	69.782	289	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35953	+		3612	13463	2122	2156							0.08756066934324735
EINPLLELI	9	Unmodified						0	0	0			REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	REV__tr|U7SQJ9|U7SQJ9_FUSNUUracil-DNAglycosylase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01662PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.313158	1052.61176	0.54639	0.00028812	-1.52	-0.0008015	-0.97357	-0.00051338	527.3120429427511	35.36	0.16876	35.361	35.312	35.481	0.00053024	1245	76	0.87076044	0.046044707	0.869241	353.33914		18.684082	-0.00038885	6.4116E-05	0.00016107	NaN	69.782	265	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36032	+		3613	13463	2122	2156							0.08756066934324735
EINQNVEIQR	10	Unmodified	_EINQNVEIQR_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8254833171001	2	621.825483	1241.63641	1.4895	0.00092619	-2.6409	-0.0016422	-1.1515	-0.00071601	621.8253555031342	15.582	0.048044	15.582	15.558	15.606	0	1176	31	0.9130621	0.018369138	0.9130621	369.77512	0	7.4392395						67	3	3	NaN	NaN	NaN	0.5626	1	17575	17575		16.858	9.8739	1	5114.4			3614	66	2123	2157	2843	2843					0.02526095069765688
EINQNVEIQR	10	Unmodified						0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	621.825483	1241.63641	1.5282	0.00095025	-1.7093	-0.0010629	-0.18117	-0.00011266	621.8241721398431	15.58	0.071897	15.568	15.544	15.616	-0.012201	1179	40	0.9112251	0.02388376	0.90970564	369.03116		9.672546	-0.00711	0.00044152	-0.0016782	NaN	16.858	82	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6342			3615	66	2123	2157							0.02526095069765688
EINTEIVF	8	Unmodified	_EINTEIVF_					0	0	0		ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.0599	0.0010222	-1.0924	-0.0010536	-0.032543	-3.1387E-05	964.49857881362	30.825	0.096508	30.825	30.801	30.897	0	279	97	1.4535767	0.05696535	1.4535767	295.27414	0	11.571716						239	5	3	NaN	NaN	NaN	0.202	1	7431	7431		49.833	2.6971	1	24426			3616	5998	2124	2158	2844	2844					0.008106589407248066
EIPNFNWPQF	10	Unmodified	_EIPNFNWPQF_					0	0	0		DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14	DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3089377959	2	646.308938	1290.60332	2.2296	0.001441	-6.4321	-0.0041571	-4.2025	-0.0027161	646.3052055397266	25.66	0.12066	25.66	25.612	25.732	0	1122	52	0.9460945	0.031161964	0.9460945	382.99283	0	12.614838						91	6	2	NaN	NaN	NaN	0.70677	1	18599	18599		7.5876	0	1	10540			3617	273	2125	2159	2845	2845					-0.03035486982321345
EIPNFNWPQF	10	Unmodified						0	0	0		DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14	DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	646.308938	1290.60332	2.3447	0.0015154	-6.5122	-0.0042089	-4.1675	-0.0026935	646.3067694681672	25.684	0.12063	25.672	25.648	25.769	-0.0116	1125	52	0.9442611	0.031165361	0.94274163	382.2506		12.61618	0.006133	-4.8863E-05	-0.0016764	NaN	7.5876	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12262			3618	273	2125	2159							-0.03035486982321345
EIPYLLDLH	9	Unmodified	_EIPYLLDLH_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.8029569610001	2	556.802957	1111.59136	0.92185	0.00051329	-5.4085	-0.0030115	-4.4866	-0.0024982	556.8011149391359	37.53	0.048214	37.53	37.506	37.554	0	1224	31	0.883646	0.018400967	0.883646	358.3221	0	7.46167						38	3	2	NaN	NaN	NaN	0.63698	1	13347	13347		3.9685	1.1833	1	2634.6			3619	2353	2126	2160	2846	2846					0.040028962745282115
EIQEMAQNK	9	Unmodified	_EIQEMAQNK_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.763505837	2	545.763506	1089.51246	1.6218	0.00088511	-10.793	-0.0058902	-9.1708	-0.0050051	545.7572902168794	18.986	0.12008	18.972	18.924	19.044	-0.014059	1278	88	0.85049206	0.05344075	0.8489726	344.96365	0	21.675781						381	6	4	NaN	NaN	NaN	0.25548	1	12056	12056		21.771	3.8014	1	57569			3620	4895	2127	2161	2847	2847					-0.028716990220800653
EIQHCLKI	8	Unmodified	_EIQHCLKI_					0	0	0			REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.27076976309996	2	492.27077	982.526987	2.3755	0.0011694	-5.2524	-0.0025856	-2.8769	-0.0014162	492.2678366388223	18.532	0.071938	18.532	18.508	18.58	0	1446	34	0.7469324	0.020404935	0.7469324	303.37094	0	8.287598						61	4	2	NaN	NaN	NaN	0.84512	1	7969	7969		2.4615	0	1	5867.1	+		3621	11201	2128	2162	2848	2848					0.03502417916718059
EIQHCLKI	8	Unmodified						0	0	0			REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.27077	982.526987	2.3755	0.0011694	-5.2524	-0.0025856	-2.8769	-0.0014162	492.2678366388223	18.532	0.071938	18.532	18.508	18.58	0	1446	34	0.7469324	0.020404935	0.7469324	303.37094		8.287598	-0.1236	-0.00028242	-0.00016768	NaN	2.4615	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5867.1	+		3622	11201	2128	2162							0.03502417916718059
EIQHCLKI	8	Unmodified						0	0	0			REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	REV__SFMBT2|p.R883T|1|0.26|ENSG00000198879|chr10:7163807-7163807|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.27077	982.526987	1.5571	0.00076649	-4.561	-0.0022452	-3.0039	-0.0014787	492.26862735497104	18.794	0.16807	18.78	18.708	18.876	-0.014061	1443	28	0.7487872	0.016693175	0.7472678	304.12427		6.7800293	0.1236	0.00039831	0.00016768	NaN	2.4615	77	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5153	+		3623	11201	2128	2162							0.03502417916718059
EIQMILDE	8	Unmodified	_EIQMILDE_					0	0	0			REV__ENST00000038176.7_1_8:59512428-59513880:-|nuORF	REV__ENST00000038176.7_1_8:59512428-59513880:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4812244361001	1	990.481224	989.473948	1.6441	0.0016285	-0.43888	-0.0004347	1.2053	0.0011938	990.4815329241541	24.888	0.14475	24.875	24.827	24.972	-0.012394	285	109	1.4500183	0.06401777	1.4484988	294.44223	0	12.999542						318	7	4	NaN	NaN	NaN	0.38377	1	8021	8021		37.302	2.0059	1	42381	+		3624	11445	2129	2163	2849	2849					-0.021210046565897755
EIRDEESLYSA	11	Unmodified	_EIRDEESLYSA_					0	0	0		tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1	tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1	tr|U7SFR8|U7SFR8_FUSNUBacterialtypeIIsecretionsystemproteinEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02332PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.3067890374501	2	656.306789	1310.59903	1.0054	0.00065987	-9.107	-0.005977	-8.1016	-0.0053171	656.3019554917424	20.67	0.072237	20.67	20.622	20.694	0	1146	67	0.93142134	0.0403468	0.93142134	376.992	0	16.330353						138	4	3	NaN	NaN	NaN	0.71564	1	18955	18955		6.4299	1.7009	1	13262			3625	13725	2130	2164	2850	2850					-0.043850409864944595
EITAFINLFT	10	Unmodified	_EITAFINLFT_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.81606433625	2	584.816064	1167.61758	2.2075	0.001291	-11.92	-0.0069708	-9.7121	-0.0056798	584.8098127521571	18.964	0.12002	18.964	18.868	18.988	0	1215	34	0.8891654	0.020233393	0.8891654	360.3483	0	8.19989						85	6	2	NaN	NaN	NaN	0.77665	1	15404	15404		1.3312	0.4053	1	7675	+		3626	11064	2131	2165	2851	2851					0.040471654459679485
EITALFTESP	10	Unmodified	_EITALFTESP_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2820543434001	2	554.282054	1106.54956	0.9611	0.00053272	-0.84999	-0.00047114	0.11111	6.1586E-05	554.2808605497826	30.221	0.14477	30.214	30.166	30.311	-0.0064106	1218	61	0.8873258	0.036801934	0.8858064	359.83435	0	14.924164						220	7	3	NaN	NaN	NaN	0.29898	1	12763	12763		27.789	4.4544	1	27196	+		3627	10327	2132	2166	2852	2852					0.0005429579534848017
EITALFTESP	10	Unmodified						0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.282054	1106.54956	0.9611	0.00053272	-0.84999	-0.00047114	0.11111	6.1586E-05	554.2808605497826	30.221	0.14477	30.214	30.166	30.311	-0.0064106	1218	61	0.8873258	0.036801934	0.8858064	359.83435		14.924164	-0.0036873	-0.00096627	-0.00075972	NaN	27.789	220	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27196	+		3628	10327	2132	2166							0.0005429579534848017
EITPPVVLR	9	Unmodified	_EITPPVVLR_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.31349185755	2	512.313492	1022.61243	1.9595	0.0010039	-2.49	-0.0012757	-0.53051	-0.00027179	512.311970071135	22.332	0.14473	22.332	22.26	22.405	0	1305	82	0.83389086	0.04978746	0.83389086	338.5063	0	20.21051						199	7	2	NaN	NaN	NaN	0.10956	1	9473	9473		34.439	13.883	1	19921			3629	5215	2133	2167	2853	2853					0.10202906374047416
EITPPVVLR	9	Unmodified						0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.313492	1022.61243	0.96751	0.00049567	-1.1388	-0.00058342	-0.17129	-8.7754E-05	512.3125113289966	22.356	0.19264	22.342	22.222	22.414	-0.013731	1302	73	0.8357362	0.04425788	0.8342168	339.25537		17.965881	0.0049282	0.00082497	0.00016297	NaN	34.439	237	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20078			3630	5215	2133	2167							0.10202906374047416
EITVQLDTLDE	11	Unmodified	_EITVQLDTLDE_					0	0	0			REV__ENSG00000108106|ENST00000264552|UBE2S	REV__ENSG00000108106|ENST00000264552|UBE2S	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.31936509645	2	638.319365	1274.62418	2.6385	0.0016842	-7.0203	-0.0044812	-4.3818	-0.002797	638.3138837854839	26.36	0.072378	26.349	26.3	26.373	-0.011135	1116	40	0.94976085	0.023824632	0.9482414	384.52805	0	9.6458435						44	4	2	NaN	NaN	NaN	0.53563	1	17501	17501		17.198	3.7354	1	3311.9	+		3631	9027	2134	2168	2854	2854					-0.0021498618393707147
EIVQFFQGILR	11	Unmodified	_EIVQFFQGILR_					0	0	0		ENST00000461310.5_1_10:70091580-70098360:+|nuORF	ENST00000461310.5_1_10:70091580-70098360:+|nuORF	ENST00000461310.5_1_10:70091580-70098360:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3824370900002	2	675.382437	1348.75032	0.59118	0.00039927	-2.6341	-0.001779	-2.0429	-0.0013797	675.3807304299784	31.451	0.072409	31.447	31.423	31.495	-0.0044155	1098	34	0.960755	0.020148396	0.9592356	388.74997	0	8.152649						89	4	3	NaN	NaN	NaN	0.11611	1	18655	18655		38.131	18.794	1	7981.2			3632	7078	2135	2169	2855	2855					0.08989609902664597
EIVQFFQGILR	11	Unmodified						0	0	0		ENST00000461310.5_1_10:70091580-70098360:+|nuORF	ENST00000461310.5_1_10:70091580-70098360:+|nuORF	ENST00000461310.5_1_10:70091580-70098360:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	675.382437	1348.75032	0.48779	0.00032945	-2.5448	-0.0017187	-2.057	-0.0013893	675.3799489726904	31.428	0.048277	31.428	31.404	31.452	0	1101	34	0.95892316	0.020150542	0.95892316	388.00876		8.153503	-0.0093327	5.1274E-05	-0.00015622	NaN	38.131	74	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7694.5			3633	7078	2135	2169							0.08989609902664597
EIWCRDSDRG	10	Unmodified	_EIWCRDSDRG_					0	0	0		nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.77493619055	2	618.774936	1235.53532	1.2142	0.00075132	-7.0982	-0.0043922	-5.884	-0.0036409	618.7700982506356	20.164	0.09635	20.15	20.102	20.198	-0.014143	1188	37	0.90571284	0.022050142	0.9041934	366.81873	0	8.93042						114	5	3	NaN	NaN	NaN	0.66626	1	16681	16681		10.36	0.74852	1	7145.5			3634	8054	2136	2170	2856	2856					-0.07302679904614706
EIWCRDSDRG	10	Unmodified						0	0	0		nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.774936	1235.53532	1.2936	0.00080046	-6.8647	-0.0042477	-5.5711	-0.0034473	618.7704884396493	20.141	0.072054	20.141	20.117	20.189	0	1188	34	0.90571284	0.020211518	0.90571284	366.81873		8.185791	-0.0047834	0.00017492	0.00075972	NaN	10.36	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4820.1			3635	8054	2136	2170							-0.07302679904614706
EIWEAGLLL	9	Unmodified	_EIWEAGLLL_					0	0	0		ENST00000481698.1_1_22:19020011-19020715:-|nuORF	ENST00000481698.1_1_22:19020011-19020715:-|nuORF	ENST00000481698.1_1_22:19020011-19020715:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2922250992001	2	522.292225	1042.5699	1.1429	0.00059693	1.4815	0.00077378	2.6244	0.0013707	522.2925901518938	33.285	0.072395	33.283	33.235	33.307	-0.0024757	1251	40	0.8670771	0.023945808	0.8655577	351.88824	0	9.717987						73	4	2	NaN	NaN	NaN	0.55027	1	10128	10128		7.5404	1.8462	1	5672.2			3636	7206	2137	2171	2857	2857					0.050315112458065414
EIYEYIIFR	9	Unmodified	_EIYEYIIFR_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.329338887	2	623.329339	1244.64412	1.5406	0.00096028	-1.4787	-0.00092172	0.061864	3.8562E-05	623.829307060797	27.905	0.048256	27.905	27.905	27.953	0	1122	55	0.9460945	0.032993257	0.9460945	383.14252	0	13.361359						83	3	2	NaN	NaN	NaN	0.33629	1	17633	17633		16.584	6.9725	1	7820.3			3637	3691	2138	2172	2858	2858					0.03158854337311823
EIYEYIIFR	9	Unmodified	_EIYEYIIFR_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.329338887	2	623.329339	1244.64412	0.71155	0.00044353	-5.315	-0.003313	-4.6035	-0.0028695	623.826490927393	27.928	0.096508	27.919	27.895	27.991	-0.009552	1131	58	0.94059354	0.034835637	0.93907416	380.9148	0	14.107483						125	5	4	NaN	NaN	NaN	0.46215	1	16891	16891		11.17	4.7404	1	10641			3638	3691	2138	2172	2859	2859					0.03158854337311823
EIYGGSDSRF	10	Unmodified	_EIYGGSDSRF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.7592777388501	2	565.759278	1129.504	2.4402	0.0013806	-1.5685	-0.00088739	0.87175	0.0004932	565.7618612522717	17.834	0.047956	17.82	17.796	17.844	-0.013786	1257	55	0.86339295	0.033150375	0.8618735	350.04138	0	13.440002						47	3	2	NaN	NaN	NaN	0.77251	1	13610	13610		2.3381	0.4135	1	3408.9			3639	2028	2139	2173	2860	2860					-0.055569296670455515
EIYWCHDF	8	Unmodified	_EIYWCHDF_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|143|3|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|143|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4505930096998	1	1112.45059	1111.44332	1.58	0.0017577	2.1508	0.0023926	3.7308	0.0041503	1112.4541379573043	33.842	0.36199	33.842	33.721	34.083	0	117	154	1.5493695	0.09023619	1.5493695	314.1418	0	18.295807						1192	16	5	NaN	NaN	NaN	0.35353	1	13324	13324		38.918	5.2196	1	341690	+		3640	13050	2140	2174	2861	2861					-0.10794738251001945
EKCLYCKKD	9	Unmodified	_EKCLYCKKD_					0	0	0		ENST00000462410.5_1_1:211533229-211533703:+|nuORF;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.27265213755	2	565.272652	1128.53075	2.0791	0.0011752	-10.105	-0.0057121	-8.0259	-0.0045368	565.2680389632749	25.371	0.14477	25.371	25.322	25.467	0	1185	46	0.90755045	0.027567148	0.90755045	367.9478	0	11.176544						165	7	4	NaN	NaN	NaN	0.40649	1	14019	14019		13.463	0.46021	1	15000			3641	936	2141	2175	2862	2862					-0.02837280371727502
EKCLYCKKD	9	Unmodified						0	0	0		ENST00000462410.5_1_1:211533229-211533703:+|nuORF;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.272652	1128.53075	1.7434	0.00098549	-9.3648	-0.0052937	-7.6214	-0.0043082	565.2676153939475	25.394	0.14476	25.382	25.31	25.455	-0.012011	1185	79	0.90755045	0.047806323	0.906031	367.9478		19.38211	0.0059251	0.00048273	-0.00075972	NaN	13.463	169	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14474			3642	936	2141	2175							-0.02837280371727502
EKDDSPQADF	10	Unmodified	_EKDDSPQADF_					0	0	0		nc|ENSG00000130653|Q6ZV29-2|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1151.4851238400997	1	1151.48512	1150.47785	2.3486	0.0027044	-3.9993	-0.0046052	-1.6507	-0.0019008	1151.4815941287773	27.301	0.096519	27.291	27.267	27.363	-0.010126	87	43	1.5670487	0.024740577	1.5655292	317.59412	0	5.01416						75	5	2	NaN	NaN	NaN	0.72369	1	14309	14309		6.4299	2.0168	1	4670.6			3643	2654	2142	2176	2863	2863					-0.09137243629197656
EKDDSPQADF	10	Unmodified						0	0	0		nc|ENSG00000130653|Q6ZV29-2|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-2|PNPLA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1151.48512	1150.47785	2.5627	0.0029509	-6.6444	-0.0076509	-4.0817	-0.0047	1151.4758686016096	27.277	0.096531	27.277	27.277	27.374	0	93	55	1.5635144	0.03180921	1.5635144	316.8778		6.4467773	-0.0066336	-0.0013497	-0.0010075	NaN	6.4299	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4615.7			3644	2654	2142	2176							-0.09137243629197656
EKDERLHC	8	Unmodified	_EKDERLHC_					0	0	0		ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A	ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant	ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.4782047437	1	1029.4782	1028.47093	2.1673	0.0022312	-4.6715	-0.0048092	-2.5042	-0.002578	1029.472110448104	29.908	0.048239	29.908	29.884	29.932	0	219	37	1.4891195	0.021303058	1.4891195	302.2246	0	4.3235474						42	3	2	NaN	NaN	NaN	0.67593	1	9702	9702		20.555	0	1	2693.2			3645	5090	2143	2177	2864	2864					-0.04216834990734242
EKDQLAQLL	9	Unmodified	_EKDQLAQLL_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2980387586	2	529.298039	1056.58152	1.2125	0.00064177	-0.70629	-0.00037384	0.50619	0.00026793	529.2978114092508	20.67	0.38541	20.656	20.608	20.993	-0.014086	1206	76	0.894683	0.04598999	0.89316356	363.02887	0	18.66101						639	17	5	NaN	NaN	NaN	0.042816	1	10726	10726		49.961	11.83	1	332260			3646	3190	2144	2178	2865	2865					0.0554970826913177
EKDRCKKC	8	Unmodified	_EKDRCKKC_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.24951139225	2	505.249511	1008.48447	1.7779	0.00089828	-0.42846	-0.00021648	1.3494	0.0006818	505.2492038087042	16.323	0.28766	16.31	16.262	16.55	-0.012995	1296	64	0.8394264	0.038761258	0.83790696	340.8167	0	15.737518						328	13	3	NaN	NaN	NaN	0.81756	1	8747	8747		6.8632	0	1	50759			3647	743	2145	2179	2866	2866					-0.019433004831626022
EKEAFYGLL	9	Unmodified	_EKEAFYGLL_					0	0	0			REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	REV__tr|U7SSR0|U7SSR0_FUSNUResolvase/invertase-typerecombinasecatalyticdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01540PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2818573781501	2	535.281857	1068.54916	1.1573	0.00061947	-3.692	-0.0019763	-2.5347	-0.0013568	535.2800121904194	22.284	0.24109	22.27	22.101	22.342	-0.013731	1260	82	0.8615505	0.04973364	0.8600311	349.5346	0	20.177155						443	11	3	NaN	NaN	NaN	0.40649	1	11215	11215		13.463	0.46021	1	195290	+		3648	13481	2146	2180	2867	2867					0.017629208661446683
EKEGGGGA	8	Unmodified	_EKEGGGGA_					0	0	0			REV__ENST00000436786.1_1_9:22646290-22682618:+|nuORF	REV__ENST00000436786.1_1_9:22646290-22682618:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3209590452001	1	704.320959	703.313683	0.57005	0.0004015	8.0967	0.0057027	8.6668	0.0061042	704.3264764157625	30.873	0.072348	30.873	30.873	30.946	0	1059	64	0.98455137	0.03839892	0.98455137	201.03798	0	7.8407745						86	4	2	NaN	NaN	NaN	0.84692	1	3264	3264		1.4396	0.36755	1	7297.3	+		3649	12180	2147	2181	2868	2868					-0.04984171538603732
EKEKEKEKEPD	11	Unmodified	_EKEKEKEKEPD_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.5683061739667	3	463.568306	1387.68309	1.0827	0.00050189	0.022614	1.0483E-05	1.1053	0.00051238	463.5682117962187	22.477	0.12043	22.477	22.453	22.573	0	1479	40	0.72651637	0.024141133	0.72651637	440.82642	0	14.648041						90	6	2	NaN	NaN	NaN	0.6875	1	19961	19961		3.9007	0.30617	1	11985			3650	1188	2148	2182	2869	2869					0.004754901103751763
EKELWHYLQYR	11	Unmodified	_EKELWHYLQYR_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2684138963334	3	522.268414	1563.78341	1.5137	0.00079057	2.5862	0.0013507	4.0999	0.0021413	522.2709877189093	22.548	0.072361	22.535	22.511	22.583	-0.01354	1329	46	0.81912065	0.027698576	0.8176012	496.46387	0	16.787933						81	4	3	NaN	NaN	NaN	0.77178	1	19692	19692		1.6806	1.2484	1	7253.7	+		3651	10660	2149	2183	2870	2870					0.02407191954694099
EKEMKSRLE	9	Unmodified	_EKEMKSRLE_					0	0	0			REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3002554840501	2	575.300255	1148.58596	2.0413	0.0011744	0.5515	0.00031728	2.5928	0.0014916	575.3004153261245	25.974	0.12065	25.974	25.877	25.998	0	1188	46	0.90571284	0.027564168	0.90571284	367.12537	0	11.172974						122	6	2	NaN	NaN	NaN	0.60736	1	14762	14762		5.1889	0.45981	1	17823	+		3652	11388	2150	2184	2871	2871					0.017608494204068847
EKEWSIFFEE	10	Unmodified	_EKEWSIFFEE_					0	0	0			REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	REV__tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.5433208882667	3	448.543321	1342.60813	1.2194	0.00054696	3.3707	0.0015119	4.5902	0.0020589	448.5451552488913	19.612	0.14404	19.612	19.564	19.708	0	1491	34	0.7190863	0.020436049	0.7190863	436.46237	0	12.403992						96	7	2	NaN	NaN	NaN	0.62092	1	19451	19451		7.8039	0	1	12297	+		3653	13421	2151	2185	2872	2872					-0.049466476301859075
EKGVDFVLNY	10	Unmodified	_EKGVDFVLNY_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.30332110175	2	592.303321	1182.59209	1.5032	0.00089033	-2.5267	-0.0014966	-1.0236	-0.00060625	592.303428209465	22.212	0.096472	22.212	22.163	22.26	0	1173	46	0.91489893	0.027549326	0.91489893	370.72235	0	11.163147						110	5	3	NaN	NaN	NaN	0.77665	1	15924	15924		1.3312	0	1	11244			3654	419	2152	2186	2873	2873					0.008096909235746352
EKIHNPQKAL	10	Unmodified	_EKIHNPQKAL_					0	0	0		ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3380295863501	2	589.33803	1176.66151	0.69968	0.00041235	4.7157	0.0027791	5.4154	0.0031915	589.3411389034866	31.934	0.24128	31.93	31.834	32.075	-0.0037613	1104	160	0.9570911	0.09706837	0.95557165	387.84137	0	39.33499						773	11	3	NaN	NaN	NaN	0.77729	1	15152	15152		1.1768	0.37694	1	133310			3655	3127	2153	2187	2874	2874					0.08024194662993978
EKIKEKHADVI	11	Unmodified	_EKIKEKHADVI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3773517121	2	655.377352	1308.74015	0.72013	0.00047196	5.7136	0.0037445	6.4337	0.0042165	655.3821699069396	32.537	0.14478	32.534	32.462	32.607	-0.0031052	1002	49	1.0192708	0.029210687	1.0177513	412.55505	0	11.823151						140	7	3	NaN	NaN	NaN	0.77883	1	18080	18080		0.44583	0.25334	1	8190.7	+		3656	9279	2154	2188	2875	2875					0.09813002177406815
EKIKEKHADVI	11	Unmodified						0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	655.377352	1308.74015	0.72013	0.00047196	5.7136	0.0037445	6.4337	0.0042165	655.3821699069396	32.537	0.14478	32.534	32.462	32.607	-0.0031052	1002	49	1.0192708	0.029210687	1.0177513	412.55505		11.823151	-0.0020672	0.00021514	-0.00075972	NaN	0.44583	140	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8190.7	+		3657	9279	2154	2188							0.09813002177406815
EKIKETQRS	9	Unmodified	_EKIKETQRS_					0	0	0		ENST00000263979.7_1_1:25944342-25980780:+|nuORF	ENST00000263979.7_1_1:25944342-25980780:+|nuORF	ENST00000263979.7_1_1:25944342-25980780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.8118446256	2	559.811845	1117.60914	1.94	0.001086	-4.4373	-0.0024841	-2.4973	-0.001398	559.8094581964609	19.924	0.21638	19.924	19.852	20.069	0	1188	97	0.90571284	0.058863997	0.90571284	367.2461	0	23.868042						377	10	4	NaN	NaN	NaN	0.35794	1	13588	13588		15.463	0	1	89151			3658	6324	2155	2189	2876	2876					0.05503611529366026
EKIKETQRS	9	Unmodified						0	0	0		ENST00000263979.7_1_1:25944342-25980780:+|nuORF	ENST00000263979.7_1_1:25944342-25980780:+|nuORF	ENST00000263979.7_1_1:25944342-25980780:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.811845	1117.60914	1.5732	0.00088072	-3.3357	-0.0018674	-1.7624	-0.00098663	559.809819001148	20.092	0.24075	20.078	19.982	20.222	-0.014141	1191	40	0.90387505	0.023894131	0.9023556	366.5009		9.688538	0.076823	0.00068045	-0.0016786	NaN	15.463	245	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77573			3659	6324	2155	2189							0.05503611529366026
EKKGPTYNP	9	Unmodified	_EKKGPTYNP_					0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.26928131915	2	517.269281	1032.52401	1.137	0.00058813	-9.4609	-0.0048938	-8.3239	-0.0043057	517.2647120213247	14.764	0.12007	14.752	14.704	14.824	-0.011738	1329	37	0.81912065	0.02216494	0.8176012	332.46817	0	8.996368						85	6	2	NaN	NaN	NaN	0.38313	1	9676	9676		14.425	0.38343	1	9845.6	+		3660	10470	2156	2190	2877	2877					0.009048660635471606
EKKGPTYNP	9	Unmodified						0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.269281	1032.52401	1.5502	0.00080188	-9.7368	-0.0050365	-8.1866	-0.0042347	517.2636679345366	14.789	0.12005	14.789	14.741	14.861	0	1326	49	0.8209676	0.029543579	0.8209676	333.2178		11.991272	0.018662	-0.00016784	0.0016832	NaN	14.425	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10637	+		3661	10470	2156	2190							0.009048660635471606
EKKGPTYNP	9	Unmodified						0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.269281	1032.52401	1.137	0.00058813	-9.4609	-0.0048938	-8.3239	-0.0043057	517.2647120213247	14.764	0.12007	14.752	14.704	14.824	-0.011738	1329	37	0.81912065	0.02216494	0.8176012	332.46817		8.996368	-0.018662	0.00011761	-0.0016832	NaN	14.425	85	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9845.6	+		3662	10470	2156	2190							0.009048660635471606
EKLFRSSRQ	9	Unmodified	_EKLFRSSRQ_					0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8200040087	2	575.820004	1149.62546	1.4476	0.00083355	-2.0646	-0.0011889	-0.61703	-0.0003553	575.8174098221058	18.938	0.16825	18.924	18.852	19.02	-0.014059	1203	58	0.8965218	0.034937263	0.89500237	363.39594	0	14.161438						251	8	3	NaN	NaN	NaN	0.35794	1	14295	14295		15.463	1.4211	1	33439	+		3663	8864	2157	2191	2878	2878					0.05662737486136393
EKLFRSSRQ	9	Unmodified						0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.820004	1149.62546	2.0275	0.0011675	3.6738	0.0021154	5.7012	0.0032829	576.3244435509837	18.844	0.12	18.844	18.82	18.94	0	1212	55	0.8910048	0.0331074	0.8910048	361.15967		13.419739	-0.039713	0.0028918	-0.0019988	NaN	15.463	185	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19376	+		3664	8864	2157	2191							0.05662737486136393
EKLFRSSRQ	9	Unmodified						0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.820004	1149.62546	1.4476	0.00083355	-2.0646	-0.0011889	-0.61703	-0.0003553	575.8174098221058	18.938	0.16825	18.924	18.852	19.02	-0.014059	1203	58	0.8965218	0.034937263	0.89500237	363.39594		14.161438	0.039713	-0.0037168	0.0019988	NaN	15.463	251	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33439	+		3665	8864	2157	2191							0.05662737486136393
EKLKNYGIVFV	11	Unmodified	_EKLKNYGIVFV_					0	0	0		tr|U7T3R0|U7T3R0_FUSNUFlavoproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00501PE=4SV=1	tr|U7T3R0|U7T3R0_FUSNUFlavoproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00501PE=4SV=1	tr|U7T3R0|U7T3R0_FUSNUFlavoproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00501PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3793630847999	2	655.379363	1308.74417	0.96963	0.00063548	2.2788	0.0014935	3.2484	0.0021289	655.3800850895519	32.539	0.12066	32.539	32.514	32.635	0	1002	49	1.0192708	0.029213786	1.0192708	412.55505	0	11.824432						99	6	2	NaN	NaN	NaN	0.77918	1	18915	18915		0.38509	0.19261	1	7854.7			3666	13978	2158	2192	2879	2879					0.10215091671102527
EKLLRNLYESI	11	Unmodified	_EKLLRNLYESI_					0	0	0		CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3904590873501	2	689.390459	1376.76637	1.5275	0.001053	-3.8923	-0.0026833	-2.3648	-0.0016303	689.3876431693196	20.766	0.16872	20.766	20.694	20.862	0	1083	34	0.9699114	0.020137608	0.9699114	392.37393	0	8.146576						125	8	2	NaN	NaN	NaN	0.62211	1	19868	19868		12.57	0	1	12935			3667	244	2159	2193	2880	2880					0.09305271348898714
EKLLRNLYESI	11	Unmodified	_EKLLRNLYESI_					0	0	0		CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	CYTH1|p.E230K|1|0.31|ENSG00000108669|chr17:78698831-78698831|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3904590873501	2	689.390459	1376.76637	1.2547	0.000865	-4.3592	-0.0030052	-3.1044	-0.0021402	689.3878603619851	20.791	0.14444	20.776	20.728	20.873	-0.014086	1083	31	0.9699114	0.018305898	0.96839195	392.37393	0	7.4055786						76	7	2	NaN	NaN	NaN	0.67772	1	18933	18933		8.9191	2.4892	1	6325.1			3668	244	2159	2193	2881	2881					0.09305271348898714
EKLYLLLE	8	Unmodified	_EKLYLLLE_					0	0	0			REV__ENST00000474676.1_1_9:126331853-126520026:-|nuORF	REV__ENST00000474676.1_1_9:126331853-126520026:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229002	1	1020.59757	1019.5903	2.3684	0.0024172	2.3618	0.0024104	4.7302	0.0048276	1020.6004226989384	36.061	0.024124	36.061	36.036	36.061	0	96	37	1.5617468	0.02121067	1.5617468	317.00122	0	4.305298						41	2	2	NaN	NaN	NaN	0.75561	1	9364	9364		15.175	0	1	3536	+		3669	12334	2160	2194	2882	2882					0.08128681905634494
EKNLLVDPNSM	11	Unmodified	_EKNLLVDPNSM_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.54818895716664	3	420.548189	1258.62274	1.466	0.00061653	-5.1901	-0.0021827	-3.7241	-0.0015662	420.88013450860467	12.1	0.072079	12.1	12.076	12.148	0	1449	31	0.74507743	0.018550932	0.74507743	452.54504	0	11.267517						61	4	2	NaN	NaN	NaN	0.76304	1	17967	17967		1.1021	0	1	6083.5			3670	230	2161	2195	2883	2883					0.00377101246294842
EKQSIFILN	9	Unmodified	_EKQSIFILN_					0	0	0			REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1	REV__tr|U7SUH9|U7SUH9_FUSNUthiaminediphosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01164PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.6095364927	1	1091.60954	1090.60226	1.3302	0.0014521	-1.3275	-0.0014491	0.0026739	2.9189E-06	1091.6068248636568	36.131	0.12051	36.132	36.084	36.205	0.0011024	78	61	1.5723488	0.03533244	1.5708294	318.87576	0	7.1654663						136	6	2	NaN	NaN	NaN	0.40649	1	12123	12123		13.463	0	1	11862	+		3671	13520	2162	2196	2884	2884					0.06058298648804339
EKRGWTVLLPA	11	Unmodified	_EKRGWTVLLPA_					0	0	0			REV__ENST00000311604.7_1_11:1913145-1913319:+|nuORF	REV__ENST00000311604.7_1_11:1913145-1913319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.36932971475	2	635.36933	1268.72411	0.98249	0.00062424	-2.1029	-0.0013361	-1.1204	-0.00071187	635.3675678191224	37.506	0.14453	37.506	37.458	37.602	0	1212	73	0.8910048	0.04411459	0.8910048	360.75754	0	17.86148						208	7	4	NaN	NaN	NaN	0.74794	1	18212	18212		4.3102	0	1	18914	+		3672	11691	2163	2197	2885	2885					0.10049340731166012
EKRQSWVWSLQ	11	Unmodified	_EKRQSWVWSLQ_					0	0	0			REV__nc|ENSG00000211785|A0A0B4J245|TRAV12-1	REV__nc|ENSG00000211785|A0A0B4J245|TRAV12-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.8780502038501	2	723.87805	1445.74155	1.1236	0.00081336	-2.6316	-0.001905	-1.508	-0.0010916	723.8767687038294	34.782	0.19291	34.782	34.71	34.903	0	1044	49	0.99369496	0.029248416	0.99369496	401.80472	0	11.826721						268	9	4	NaN	NaN	NaN	0.3345	1	20370	20370		24.393	1.2758	1	33369	+		3673	13227	2164	2198	2886	2886					0.036506362661839376
EKSEPLQKT	9	Unmodified	_EKSEPLQKT_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2876710375501	2	530.287671	1058.56079	1.2447	0.00066004	-3.1362	-0.0016631	-1.8915	-0.001003	530.2843779420913	35.553	0.0965	35.553	35.481	35.577	0.00052643	1260	43	0.8615505	0.025791943	0.8600311	349.57657	0	10.465179						40	5	2	NaN	NaN	NaN	0.6532	1	10796	10796		3.2116	0	1	2469.4	+		3674	8860	2165	2199	2887	2887					0.03385117889479261
EKTPPRAPGT	10	Unmodified	_EKTPPRAPGT_					0	0	0			REV__nc|ENSG00000188655|P60153|RNASE9	REV__nc|ENSG00000188655|P60153|RNASE9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2880053885501	2	527.288005	1052.56146	1.2142	0.00064021	-7.7831	-0.0041039	-6.569	-0.0034637	527.285429849629	24.864	0.21717	24.851	24.779	24.996	-0.012392	1260	73	0.8615505	0.044214845	0.8600311	349.60217	0	17.94159						421	10	4	NaN	NaN	NaN	0.65442	1	10522	10522		11.17	0.81017	1	81480	+		3675	11065	2166	2200	2888	2888					0.03727957329192577
EKVSATRRRT	10	Unmodified	_EKVSATRRRT_					0	0	0			REV__ENSG00000184708|ENST00000330125|EIF4ENIF1	REV__ENSG00000184708|ENST00000330125|EIF4ENIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.9020654488	3	401.902065	1202.68437	0.98665	0.00039654	0.68161	0.00027394	1.6683	0.00067048	401.90238612514213	14.453	0.071959	14.453	14.453	14.525	0	1434	43	0.75435036	0.025954425	0.75435036	458.40805	0	15.772186						98	4	3	NaN	NaN	NaN	0.52943	1	16558	16558		11.467	0	1	10961	+		3676	10934	2167	2201	2889	2889					0.09113213780460683
EKVVLVSM	8	Unmodified	_EKVVLVSM_					0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.5172160119001	1	904.517216	903.50994	2.1116	0.00191	-1.4677	-0.0013276	0.64391	0.00058243	904.5158866703812	26.311	0.072367	26.3	26.276	26.349	-0.011135	300	76	1.4411188	0.044530153	1.4395994	293.01733	0	9.054138						161	4	3	NaN	NaN	NaN	0.50906	1	6026	6026		30.61	0	1	23388			3677	7864	2168	2202	2890	2890					0.0543249731092601
EKYVHDLRD	9	Unmodified	_EKYVHDLRD_					0	0	0		tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7961945614	2	587.796195	1173.57784	1.7603	0.0010347	-11.536	-0.0067811	-9.7762	-0.0057464	587.7898629443896	14.045	0.095973	14.034	13.986	14.082	-0.010672	1170	34	0.91673553	0.02020061	0.9152161	371.4995	0	8.186127						60	5	2	NaN	NaN	NaN	0.54912	1	15045	15045		7.5876	1.8934	1	4304.4			3678	13745	2169	2203	2891	2891					-0.00200961504742736
ELAIAVLAI	9	Unmodified	_ELAIAVLAI_					0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5764454503	1	912.576445	911.569169	1.4324	0.0013072	-0.46059	-0.00042032	0.97184	0.00088688	912.5758021595622	31.863	0.21723	31.863	31.839	32.056	0	297	103	1.4428991	0.060551286	1.4428991	293.3404	0	12.310059						415	10	4	NaN	NaN	NaN	0.062072	1	6269	6269		41.785	2.8666	1	75694			3679	2561	2170	2204	2892	2892					0.10984716596738053
ELAIAVLAI	9	Unmodified						0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	912.576445	911.569169	1.019	0.00092996	-0.41177	-0.00037577	0.60727	0.00055418	912.5763753340657	31.862	0.2896	31.857	31.761	32.05	-0.0044155	294	115	1.4446791	0.067682266	1.4431597	293.70227		13.759766	-0.002733	3.1652E-05	0.00013032	NaN	41.785	385	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71601			3680	2561	2170	2204							0.10984716596738053
ELAPCILAPP	10	Unmodified	_ELAPCILAPP_					0	0	0		ENSG00000142698|ENST00000488417|C1orf94	ENSG00000142698|ENST00000488417|C1orf94	ENSG00000142698|ENST00000488417|C1orf94	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.28080313315	2	512.280803	1022.54705	1.937	0.00099229	-8.8921	-0.0045552	-6.955	-0.0035629	512.2769780751892	12.052	0.095986	12.052	11.98	12.076	0	1266	31	0.85786515	0.018428862	0.85786515	348.23865	0	7.4809265						65	5	2	NaN	NaN	NaN	0.75316	1	9462	9462		4.4131	0.44458	1	4993			3681	3385	2171	2205	2893	2893					0.036681688566886805
ELAPSRGGAP	10	Unmodified	_ELAPSRGGAP_					0	0	0		ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.5003203943002	1	954.50032	953.493044	1.3525	0.001291	-2.8869	-0.0027555	-1.5343	-0.0014645	954.4976608392254	36.398	0.072315	36.398	36.326	36.398	0	300	73	1.4411188	0.042733073	1.4411188	292.78677	0	8.681915						105	4	2	NaN	NaN	NaN	0.507	1	7166	7166		19.164	1.3833	1	11333			3682	6209	2172	2206	2894	2894					0.014437127493351909
ELAQVIVSR	9	Unmodified	_ELAQVIVSR_					0	0	0		GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant;ENST00000587936.5_1_16:4862027-4863884:-|nuORF;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.8007486230501	2	507.800749	1013.58694	1.7901	0.00090902	-2.0782	-0.0010553	-0.28812	-0.00014631	507.79989732494204	19.18	0.16798	19.18	19.132	19.3	0	1305	46	0.83389086	0.027677655	0.83389086	338.5463	0	11.236664						157	8	3	NaN	NaN	NaN	0.045904	1	9137	9137		48.65	20.861	1	25889			3683	3284	2173	2207	2895	2895					0.0806943185162936
ELAQVIVSR	9	Unmodified	_ELAQVIVSR_					0	0	0		GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant;ENST00000587936.5_1_16:4862027-4863884:-|nuORF;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	GLYR1|p.V368I|1|0.17|ENSG00000140632|chr16:4813754-4813754|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.8007486230501	2	507.800749	1013.58694	1.317	0.00066878	-1.3999	-0.00071089	-0.082921	-4.2107E-05	507.79985061967113	19.202	0.14421	19.188	19.164	19.308	-0.014141	1308	40	0.83204526	0.023989916	0.8305259	337.79703	0	9.739502						146	7	3	NaN	NaN	NaN	0.090258	1	8964	8964		37.231	7.6325	1	22826			3684	3284	2173	2207	2896	2896					0.0806943185162936
ELARLAFP	8	Unmodified	_ELARLAFP_					0	0	0		ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.76617752420003	2	458.766178	915.517802	1.4656	0.00067237	-2.6005	-0.001193	-1.1348	-0.00052063	458.764992299739	26.022	0.048275	26.022	26.022	26.07	0	1356	94	0.8024889	0.057293415	0.8024889	326.26465	0	23.293549						97	3	2	NaN	NaN	NaN	0.83582	1	6341	6341		4.4131	0.3594	1	8301.6			3685	3127	2174	2208	2897	2897					0.05666392622708827
ELARLAFP	8	Unmodified						0	0	0		ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	458.766178	915.517802	1.9089	0.00087575	-2.3656	-0.0010853	-0.45668	-0.00020951	458.7652721901715	26.046	0.072424	26.035	26.011	26.083	-0.011135	1347	73	0.8080346	0.044353783	0.8065152	328.51935		18.032745	0.0063978	0.0001153	0.0020131	NaN	4.4131	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6969.4			3686	3127	2174	2208							0.05666392622708827
ELCELYGYEF	10	Unmodified	_ELCELYGYEF_					0	0	0		tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.27337203155	2	633.273372	1264.53219	1.4563	0.00092221	-4.0342	-0.0025548	-2.578	-0.0016326	633.2706256749395	34.806	0.048306	34.806	34.782	34.831	0	1152	37	0.92775106	0.022023976	0.92775106	375.6491	0	8.917603						49	3	2	NaN	NaN	NaN	0.72631	1	18089	18089		6.2502	1.3405	1	3444.2			3687	13921	2175	2209	2898	2898					-0.08949367801983499
ELCIKAQE	8	Unmodified	_ELCIKAQE_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4709941008	1	933.470994	932.463718	1.4486	0.0013522	1.9326	0.001804	3.3812	0.0031563	933.4715427206314	26.504	0.16888	26.494	26.446	26.614	-0.010645	303	73	1.4393384	0.042733073	1.437819	292.51895	0	8.684692						171	8	3	NaN	NaN	NaN	0.55996	1	6522	6522		27.789	4.4544	1	14305	+		3688	9200	2176	2210	2899	2899					-0.005215675911813378
ELDPLKLFV	9	Unmodified	_ELDPLKLFV_					0	0	0			REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.3157001955001	2	537.3157	1072.61685	0.99159	0.0005328	-3.0339	-0.0016301	-2.0423	-0.0010973	537.3143136285463	30.269	0.048269	30.263	30.238	30.287	-0.0064106	1263	37	0.85970795	0.02211219	0.8581885	348.7702	0	8.970581						76	3	3	NaN	NaN	NaN	0.36492	1	11379	11379		15.175	0	1	7236	+		3689	12850	2177	2211	2900	2900					0.08344370796953626
ELDPLKLFV	9	Unmodified						0	0	0			REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.3157	1072.61685	2.0577	0.0011057	-4.8315	-0.002596	-2.7737	-0.0014904	537.3141466910454	30.27	0.02412	30.27	30.27	30.294	0	1266	31	0.85786515	0.018428862	0.85786515	348.02264		7.476288	0.0036863	-0.0014792	-0.00016167	NaN	15.175	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2702	+		3690	12850	2177	2211							0.08344370796953626
ELDPLKLFV	9	Unmodified						0	0	0			REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	REV__ENST00000576239.5_1_17:663415-673427:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.3157	1072.61685	0.99159	0.0005328	-3.0339	-0.0016301	-2.0423	-0.0010973	537.3143136285463	30.269	0.048269	30.263	30.238	30.287	-0.0064106	1263	37	0.85970795	0.02211219	0.8581885	348.7702		8.970581	-0.0036863	0.00045261	0.00016167	NaN	15.175	76	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7236	+		3691	12850	2177	2211							0.08344370796953626
ELDPSSPVTP	10	Unmodified	_ELDPSSPVTP_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2585792471001	2	521.258579	1040.50261	1.401	0.00073029	3.3454	0.0017438	4.7465	0.0024741	521.2599196167216	21.705	0.1685	21.691	21.643	21.812	-0.013897	1266	64	0.85786515	0.038719356	0.8563457	348.15875	0	15.713989						162	8	2	NaN	NaN	NaN	0.44258	1	10011	10011		21.835	0	1	27866	+		3692	9860	2178	2212	2901	2901					-0.01602563755795927
ELDVKRAFAKW	11	Unmodified	_ELDVKRAFAKW_					0	0	0		ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.88006157655	2	681.880062	1361.74557	1.3135	0.00089568	3.0007	0.0020461	4.3143	0.0029418	681.8818523073411	32.828	0.048252	32.828	32.828	32.876	0	1068	49	0.97906286	0.029279947	0.97906286	396.1195	0	11.846405						50	3	2	NaN	NaN	NaN	0.6875	1	19710	19710		8.2775	3.0887	1	4126.5			3693	4517	2179	2213	2902	2902					0.07916725759878318
ELEELYLL	8	Unmodified	_ELEELYLL_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.276240684	2	511.276241	1020.53793	1.6726	0.00085515	4.652	0.0023785	6.3246	0.0032336	511.27830677069477	29.546	0.072393	29.546	29.522	29.594	0	1299	31	0.8375814	0.018452704	0.8375814	340.01355	0	7.4908447						53	4	2	NaN	NaN	NaN	0.80692	1	9391	9391		8.2903	0.74991	1	7947.5			3694	2174	2180	2214	2903	2903					0.028480987720058693
ELEHQQCL	8	Unmodified	_ELEHQQCL_					0	0	0		nc|ENSG00000135040|Q5VZE5-2|NAA35;ENSG00000135040|ENST00000361671|NAA35	nc|ENSG00000135040|Q5VZE5-2|NAA35	nc|ENSG00000135040|Q5VZE5-2|NAA35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.23184156785004	2	500.231842	998.44913	1.5022	0.00075143	6.6093	0.0033062	8.1115	0.0040576	500.2354390794608	18.842	0.14413	18.828	18.756	18.9	-0.014059	1359	70	0.8006399	0.042498827	0.7991205	325.1129	0	17.257324						140	7	2	NaN	NaN	NaN	0.75561	1	8329	8329		15.175	0.75036	1	12056			3695	2913	2181	2215	2904	2904					-0.05015639739303879
ELFAELYIYRG	11	Unmodified	_ELFAELYIYRG_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.5748439173333	3	458.574844	1372.7027	1.4164	0.00064953	-0.22785	-0.00010448	1.1886	0.00054505	458.5747320643927	25.25	0.19304	25.25	25.202	25.395	0	1389	46	0.7821392	0.027764738	0.7821392	474.62756	0	16.84851						337	9	5	NaN	NaN	NaN	0.33431	1	19827	19827		17.995	10.705	1	100130	+		3696	9746	2182	2216	2905	2905					0.03125910911785468
ELFAELYIYRG	11	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	458.574844	1372.7027	1.4164	0.00064953	-0.22785	-0.00010448	1.1886	0.00054505	458.5747320643927	25.25	0.19304	25.25	25.202	25.395	0	1389	46	0.7821392	0.027764738	0.7821392	474.62756		16.84851	-0.0059383	-0.00056943	0.00075972	NaN	17.995	337	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100130	+		3697	9746	2182	2216							0.03125910911785468
ELFAELYIYRG	11	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	458.574844	1372.7027	1.5317	0.00070238	0.79519	0.00036466	2.3269	0.001067	458.5755765517874	25.274	0.24124	25.262	25.165	25.407	-0.012011	1389	76	0.7821392	0.046274483	0.78061974	474.62753		28.080872	0.0059383	0.00083799	-0.00075972	NaN	17.995	431	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115890	+		3698	9746	2182	2216							0.03125910911785468
ELFEEAFAIFR	11	Unmodified	_ELFEEAFAIFR_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3508026106	2	686.350803	1370.68705	1.2996	0.00089201	-1.3182	-0.00090475	-0.018572	-1.2747E-05	686.3503645126109	33.431	0.048283	33.431	33.383	33.431	0	1089	31	0.96624947	0.018313825	0.96624947	390.9097	0	7.409088						53	3	3	NaN	NaN	NaN	0.29849	1	19805	19805		25.681	15.321	1	4164			3699	170;3312	2183	2217	2906	2906					0.016536243947484763
ELFYFLVCV	9	Unmodified	_ELFYFLVCV_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7910036787	2	566.791004	1131.56745	1.7741	0.0010055	-10.444	-0.0059195	-8.6697	-0.0049139	567.2850824564119	28.653	0.096498	28.653	28.605	28.701	0	1230	94	0.8799654	0.05702144	0.8799654	356.75247	0	23.117432						207	5	3	NaN	NaN	NaN	0.24994	1	14145	14145		22.126	9.0252	1	26361	+		3700	8227	2184	2218	2907	2907					0.006933395164878675
ELFYFLVCV	9	Unmodified						0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.791004	1131.56745	1.7741	0.0010055	-10.444	-0.0059195	-8.6697	-0.0049139	567.2850824564119	28.653	0.096498	28.653	28.605	28.701	0	1230	94	0.8799654	0.05702144	0.8799654	356.75247		23.117432	-0.0075011	0.00068971	-0.0010806	NaN	22.126	207	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26361	+		3701	8227	2184	2218							0.006933395164878675
ELFYFLVCV	9	Unmodified						0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|192|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.791004	1131.56745	0.98753	0.00055973	-11.626	-0.0065894	-10.638	-0.0060296	566.7861110994662	28.676	0.096542	28.668	28.644	28.74	-0.0083504	1224	82	0.883646	0.049658418	0.88212657	358.24466		20.132355	0.0075011	-0.00065006	0.0010806	NaN	22.126	215	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26445	+		3702	8227	2184	2218							0.006933395164878675
ELGDYSMEYD	10	Unmodified	_ELGDYSMEYD_					0	0	0		tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.2344438363001	2	611.234444	1220.45433	0.78637	0.00048066	-0.77472	-0.00047353	0.011653	7.123E-06	611.2341967289007	28.773	0.072384	28.765	28.74	28.813	-0.0083504	1140	37	0.93509084	0.022012115	0.9335714	378.76868	0	8.91626						85	4	3	NaN	NaN	NaN	0.77421	1	16300	16300		1.9246	0	1	8760.9			3703	13981	2185	2219	2908	2908					-0.14707425458004764
ELGERPDEL	9	Unmodified	_ELGERPDEL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2616532523	2	529.261653	1056.50875	1.3447	0.00071169	1.8112	0.00095861	3.1559	0.0016703	529.2621317786553	17.186	0.19187	17.172	17.124	17.316	-0.013569	1287	67	0.8449601	0.04055661	0.84344065	342.8535	0	16.45633						301	9	3	NaN	NaN	NaN	0.10363	1	10709	10709		35.296	2.5185	1	36176			3704	1964	2186	2220	2909	2909					-0.017240455242927055
ELGERPDEL	9	Unmodified						0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.261653	1056.50875	1.8918	0.0010013	-1.3616	-0.00072065	0.53022	0.00028063	529.2608680352032	17.165	0.19194	17.165	17.117	17.309	0	1284	67	0.8468043	0.0405522	0.8468043	343.6018		16.45456	-0.003522	-0.0017236	0.0016818	NaN	35.296	320	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35556			3705	1964	2186	2220							-0.017240455242927055
ELGGPSAW	8	Unmodified	_ELGGPSAW_					0	0	0			REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.3886446799	1	816.388645	815.381368	2.0083	0.0016396	4.4572	0.0036388	6.4655	0.0052784	816.3931778608768	34.614	0.096527	34.614	34.589	34.686	0	462	43	1.3447032	0.025071263	1.3447032	273.85645	0	5.105896						92	5	2	NaN	NaN	NaN	0.59262	1	4958	4958		25.752	5.1963	1	7124	+		3706	11480	2187	2221	2910	2910					-0.033707216078141755
ELGGPSAW	8	Unmodified						0	0	0			REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	816.388645	815.381368	2.0083	0.0016396	4.4572	0.0036388	6.4655	0.0052784	816.3931778608768	34.614	0.096527	34.614	34.589	34.686	0	462	43	1.3447032	0.025071263	1.3447032	273.85645		5.105896	0.00097822	-0.00018734	-0.00013554	NaN	25.752	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7124	+		3707	11480	2187	2221							-0.033707216078141755
ELGGPSAW	8	Unmodified						0	0	0			REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	REV__ENST00000231061.8_1_5:151042679-151042859:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	816.388645	815.381368	1.6382	0.0013374	4.8577	0.0039658	6.496	0.0053032	816.3931751765397	34.612	0.096439	34.612	34.587	34.684	-0.00064468	459	52	1.3464937	0.030442119	1.3449743	274.22107		6.1996765	-0.00097822	0.00013968	0.00013554	NaN	25.752	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7210.6	+		3708	11480	2187	2221							-0.033707216078141755
ELGMMRLYHL	10	Unmodified	_ELGMMRLYHL_					0	0	0			REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.82284351085	2	631.822844	1261.63113	1.8311	0.0011569	-7.0142	-0.0044317	-5.183	-0.0032748	631.818516253925	25.153	0.16892	25.153	25.105	25.274	0	1086	67	0.9680805	0.040299058	0.9680805	391.98837	0	16.317596						280	8	4	NaN	NaN	NaN	0.14619	1	18032	18032		40.154	2.023	1	45935	+		3709	8451	2188	2222	2911	2911					0.010783766819258744
ELGMMRLYHL	10	Unmodified						0	0	0			REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	631.822844	1261.63113	1.8311	0.0011569	-7.0142	-0.0044317	-5.183	-0.0032748	631.818516253925	25.153	0.16892	25.153	25.105	25.274	0	1086	67	0.9680805	0.040299058	0.9680805	391.98837		16.317596	-0.13861	9.2464E-05	0.00075972	NaN	40.154	280	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45935	+		3710	8451	2188	2222							0.010783766819258744
ELGMMRLYHL	10	Unmodified						0	0	0			REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	631.822844	1261.63113	1.8458	0.0011662	-7.7814	-0.0049164	-5.9355	-0.0037502	632.319766155784	25.443	0.12064	25.431	25.382	25.503	-0.012011	1086	49	0.9680805	0.029302001	0.9665611	391.98837		11.864777	0.13861	-0.00087701	-0.00075972	NaN	40.154	154	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14451	+		3711	8451	2188	2222							0.010783766819258744
ELGPQGPT	8	Unmodified	_ELGPQGPT_					0	0	0		ENST00000341807.8_1_8:139601498-139734429:-|nuORF;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.3992093662001	1	798.399209	797.391933	1.7209	0.001374	5.5059	0.0043959	7.2268	0.0057699	798.4034839944457	27.35	0.16899	27.35	27.302	27.471	0	483	73	1.3321642	0.043020606	1.3321642	271.40417	0	8.764648						220	8	2	NaN	NaN	NaN	0.69898	1	4723	4723		19.118	0	1	33557			3712	4677	2189	2223	2912	2912					-0.014867389533719688
ELGVKDNPPF	10	Unmodified	_ELGVKDNPPF_					0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2902137265	2	558.290214	1114.56587	1.2204	0.00068136	-2.2688	-0.0012667	-1.0484	-0.00058531	558.2912671710642	20.983	0.14455	20.983	20.838	20.983	0	1251	94	0.8670771	0.057052255	0.8670771	351.59186	0	23.134155						109	7	2	NaN	NaN	NaN	0.65442	1	13461	13461		11.17	0.56537	1	9644.4	+		3713	13576	2190	2224	2913	2913					0.01317421752082737
ELGVKDNPPF	10	Unmodified						0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.290214	1114.56587	1.2204	0.00068136	-2.2688	-0.0012667	-1.0484	-0.00058531	558.2912671710642	20.983	0.14455	20.983	20.838	20.983	0	1251	94	0.8670771	0.057052255	0.8670771	351.59186		23.134155	-0.0050762	-0.0014559	0.0016807	NaN	11.17	109	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9644.4	+		3714	13576	2190	2224							0.01317421752082737
ELGVKDNPPF	10	Unmodified						0	0	0			REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	REV__tr|U7T232|U7T232_FUSNUMethylenetetrahydrofolatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00452PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.290214	1114.56587	1.1596	0.00064739	0.83244	0.00046475	1.992	0.0011121	558.2917922487095	21.007	0.048132	20.993	20.969	21.017	-0.014086	1254	79	0.8652351	0.047852874	0.86371565	350.8449		19.4039	0.0050762	0.0020069	-0.0016807	NaN	11.17	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8404.5	+		3715	13576	2190	2224							0.01317421752082737
ELHFYSCE	8	Unmodified	_ELHFYSCE_					0	0	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2131174984501	2	514.213117	1026.41168	1.8422	0.00094727	-0.33643	-0.000173	1.5057	0.00077427	514.2123803694184	23.441	0.096539	23.427	23.427	23.524	-0.013294	1347	55	0.8080346	0.033261716	0.8065152	327.99417	0	13.501465						86	5	2	NaN	NaN	NaN	0.8439	1	9421	9421		3.1533	0	1	8201.3	+		3716	12897	2191	2225	2914	2914					-0.10046731004922549
ELHGGKANAG	10	Unmodified	_ELHGGKANAG_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4799193032001	1	953.479919	952.472643	1.0148	0.00096759	-4.6345	-0.0044189	-3.6197	-0.0034513	953.4755810386496	34.927	0.14463	34.927	34.903	35.048	0	324	49	1.42687	0.028509855	1.42687	289.89633	0	5.792328						150	7	2	NaN	NaN	NaN	0.507	1	7147	7147		19.164	0.045272	1	14553	+		3717	9035	2192	2226	2915	2915					-0.005494579104833974
ELHGGKANAG	10	Unmodified						0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	953.479919	952.472643	1.0148	0.00096759	-4.6345	-0.0044189	-3.6197	-0.0034513	953.4755810386496	34.927	0.14463	34.927	34.903	35.048	0	324	49	1.42687	0.028509855	1.42687	289.89633		5.792328	0.00078758	-0.0014234	-0.00013117	NaN	19.164	150	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14553	+		3718	9035	2192	2226							-0.005494579104833974
ELHGGKANAG	10	Unmodified						0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	953.479919	952.472643	1.3728	0.0013089	-2.1725	-0.0020715	-0.79976	-0.00076256	953.4784770770007	34.926	0.14473	34.926	34.901	35.046	-4.5776E-05	321	52	1.4286518	0.030290127	1.4271324	290.25833		6.154022	-0.00078758	0.000924	0.00013117	NaN	19.164	167	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11923	+		3719	9035	2192	2226							-0.005494579104833974
ELHMKEQF	8	Unmodified	_ELHMKEQF_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2578593531001	2	531.257859	1060.50117	1.852	0.00098389	4.5814	0.0024339	6.4334	0.0034178	531.2604656307615	16.302	0.21598	16.302	16.206	16.422	0	1293	52	0.84127116	0.031354427	0.84127116	341.3401	0	12.721863						156	10	3	NaN	NaN	NaN	0.5868	1	11111	11111		26.115	8.3346	1	16080	+		3720	13091	2193	2227	2916	2916					-0.02666476325543954
ELHRDLWA	8	Unmodified	_ELHRDLWA_					0	0	0		ENST00000536388.5_1_12:6559784-6560133:-|nuORF;ENST00000538616.1_1_12:6559812-6560605:-|nuORF	ENST00000536388.5_1_12:6559784-6560133:-|nuORF	ENST00000536388.5_1_12:6559784-6560133:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2696156701501	2	520.269616	1038.52468	1.5894	0.00082689	-2.5037	-0.0013026	-0.91431	-0.00047569	520.7712851984048	20.213	0.12014	20.213	20.141	20.261	0	1284	67	0.8468043	0.040574074	0.8468043	343.67834	0	16.467133						195	6	3	NaN	NaN	NaN	0.79607	1	10138	10138		9.746	0.78402	1	25856			3721	7472	2194	2228	2917	2917					0.006957055032899007
ELHRDLWA	8	Unmodified						0	0	0		ENST00000536388.5_1_12:6559784-6560133:-|nuORF;ENST00000538616.1_1_12:6559812-6560605:-|nuORF	ENST00000536388.5_1_12:6559784-6560133:-|nuORF	ENST00000536388.5_1_12:6559784-6560133:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.269616	1038.52468	1.4487	0.00075372	-1.7922	-0.00093241	-0.34346	-0.00017869	520.7711868251708	20.213	0.096239	20.198	20.15	20.246	-0.014141	1290	58	0.84311575	0.035039425	0.8415963	342.18134		14.220856	-0.0071653	0.00037184	-0.002604	NaN	9.746	137	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22562			3722	7472	2194	2228							0.006957055032899007
ELIEQGLTPP	10	Unmodified	_ELIEQGLTPP_					0	0	0			REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7978715831	2	548.797872	1095.58119	1.0971	0.00060206	-8.475	-0.0046511	-7.378	-0.004049	549.2962586751357	29.256	0.096518	29.248	29.2	29.296	-0.0077229	1224	61	0.883646	0.03679794	0.88212657	358.38626	0	14.924377						119	5	2	NaN	NaN	NaN	0.64158	1	12335	12335		12.049	4.5083	1	17552	+		3723	8994	2195	2229	2918	2918					0.03722288549283803
ELIKPPTILR	10	Unmodified	_ELIKPPTILR_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.9201744426	3	393.920174	1178.73869	1.3136	0.00051744	-2.5444	-0.0010023	-1.2309	-0.00048487	393.9192659131028	21.585	0.2169	21.585	21.464	21.681	0	1410	34	0.76917666	0.02037841	0.76917666	467.5253	0	12.386536						184	10	3	NaN	NaN	NaN	0.12835	1	15795	15795		42.061	18.709	1	18996			3724	5384;765	2196	2230	2919	2919					0.15647412879320655
ELIPGYIEKS	10	Unmodified	_ELIPGYIEKS_					0	0	0			REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.5447732537333	3	383.544773	1147.61249	1.9476	0.00074698	2.1672	0.00083122	4.1148	0.0015782	383.54410750758785	13.973	0.071989	13.973	13.901	13.973	0	1455	34	0.7413668	0.020413876	0.7413668	450.76285	0	12.411926						63	4	2	NaN	NaN	NaN	0.74182	1	14732	14732		2.4611	0.76266	1	4714.1	+		3725	8387	2197	2231	2920	2920					0.044588615833845324
ELIPGYIEKS	10	Unmodified						0	0	0			REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	383.544773	1147.61249	1.9476	0.00074698	2.1672	0.00083122	4.1148	0.0015782	383.54410750758785	13.973	0.071989	13.973	13.901	13.973	0	1455	34	0.7413668	0.020413876	0.7413668	450.76285		12.411926	-0.090258	0.0026501	-0.00016798	NaN	2.4611	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4714.1	+		3726	8387	2197	2231							0.044588615833845324
ELIPGYIEKS	10	Unmodified						0	0	0			REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	REV__ENST00000460376.5_1_7:121716545-121719057:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	383.544773	1147.61249	1.4172	0.00054356	-0.43496	-0.00016683	0.98224	0.00037673	383.54453722802816	14.165	0.095894	14.154	14.058	14.154	-0.011219	1452	52	0.74322224	0.03153491	0.7417028	451.89096		19.173767	0.090258	-0.0003441	0.00016798	NaN	2.4611	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42620	+		3727	8387	2197	2231							0.044588615833845324
ELIQDITQR	9	Unmodified	_ELIQDITQR_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.3063951069499	2	558.306395	1114.59824	1.3681	0.00076385	-1.8473	-0.0010314	-0.47917	-0.00026753	558.3061864028352	20.285	0.14422	20.285	20.237	20.381	0	1215	43	0.8891654	0.025753021	0.8891654	360.5483	0	10.442596						103	7	3	NaN	NaN	NaN	0.31471	1	13470	13470		17.97	0	1	11527			3728	3581	2198	2232	2921	2921					0.045522091550765253
ELKGVFDYDIQ	11	Unmodified	_ELKGVFDYDIQ_					0	0	0			REV__ENSG00000136213|ENST00000618655|CHST12	REV__ENSG00000136213|ENST00000618655|CHST12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.83244268195	2	663.832443	1325.65033	1.8149	0.0012048	-2.9997	-0.0019913	-1.1848	-0.0007865	664.3317893280114	21.32	0.096157	21.306	21.282	21.378	-0.014006	1110	58	0.95342636	0.034813106	0.9519069	385.85278	0	14.088898						133	5	3	NaN	NaN	NaN	0.6085	1	18327	18327		13.463	0.46021	1	15940	+		3729	9653	2199	2233	2922	2922					0.0005332777818694012
ELKQEEEIP	9	Unmodified	_ELKQEEEIP_					0	0	0		KAT6A|p.E1411Q|1|0.21|ENSG00000083168|chr8:41933989-41933989|C/G|missense_variant	KAT6A|p.E1411Q|1|0.21|ENSG00000083168|chr8:41933989-41933989|C/G|missense_variant	KAT6A|p.E1411Q|1|0.21|ENSG00000083168|chr8:41933989-41933989|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7849611731001	2	557.784961	1113.55537	1.2705	0.00070865	-0.8458	-0.00047177	0.42468	0.00023688	557.7848872415512	36.928	0.28886	36.928	36.856	37.145	0	1206	76	0.894683	0.045994937	0.894683	362.7898	0	18.650726						454	13	2	NaN	NaN	NaN	0.3389	1	13427	13427		16.417	0.95397	1	79073			3730	7830	2200	2234	2923	2923					0.003133943070224632
ELLCSAIRD	9	Unmodified	_ELLCSAIRD_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.26314169624993	2	510.263142	1018.51173	0.8673	0.00044255	3.0362	0.0015493	3.9035	0.0019918	510.2647641792818	29.545	0.14478	29.538	29.514	29.659	-0.0070648	1278	79	0.85049206	0.047935665	0.8489726	345.26373	0	19.45987						193	7	2	NaN	NaN	NaN	0.46215	1	9129	9129		11.17	4.3071	1	25207	+		3731	9774	2201	2235	2924	2924					0.0032150632886214225
ELLCSSKFH	9	Unmodified	_ELLCSSKFH_					0	0	0			REV__ENST00000427391.1_1_X:130959344-130964414:-|nuORF	REV__ENST00000427391.1_1_X:130959344-130964414:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2656843852001	2	532.265684	1062.51682	1.8471	0.00098316	-3.0919	-0.0016457	-1.2447	-0.00066253	532.2641407676558	15.534	0.09604	15.534	15.534	15.63	0	1392	40	0.780288	0.024065375	0.780288	316.5889	0	9.764099						134	5	3	NaN	NaN	NaN	0.62619	1	11221	11221		4.4131	0.44458	1	24581	+		3732	12136	2202	2236	2925	2925					-0.011941898085069624
ELLCSSKFH	9	Unmodified						0	0	0			REV__ENST00000427391.1_1_X:130959344-130964414:-|nuORF	REV__ENST00000427391.1_1_X:130959344-130964414:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.265684	1062.51682	1.8471	0.00098316	-3.0919	-0.0016457	-1.2447	-0.00066253	532.2641407676558	15.534	0.09604	15.534	15.534	15.63	0	1392	40	0.780288	0.024065375	0.780288	316.5889		9.764099	-0.064632	-0.00066258	-0.00016587	NaN	4.4131	134	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24581	+		3733	12136	2202	2236							-0.011941898085069624
ELLDPLGG	8	Unmodified	_ELLDPLGG_					0	0	0		ENST00000461003.5_1_1:161017800-161017908:-|nuORF	ENST00000461003.5_1_1:161017800-161017908:-|nuORF	ENST00000461003.5_1_1:161017800-161017908:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.4352605215003	1	813.435261	812.427984	1.3601	0.0011063	6.1957	0.0050398	7.5557	0.0061461	813.4393703445445	29.811	0.12066	29.803	29.779	29.9	-0.0070648	408	52	1.3769034	0.030383706	1.375384	280.43106	0	6.188202						148	6	3	NaN	NaN	NaN	0.76633	1	4818	4818		13.737	0	1	11767			3734	7077	2203	2237	2926	2926					0.014267182235016662
ELLLCLPVE	9	Unmodified	_ELLLCLPVE_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;ZNF292|p.L151*|1|0.33|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant;ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7884609897501	2	514.788461	1027.56237	1.8086	0.00093102	4.8564	0.0025	6.665	0.003431	514.7915343498945	36.83	0.096218	36.832	36.807	36.904	0.0016747	1284	28	0.8468043	0.01659578	0.8452849	343.7263	0	6.7364197						46	5	2	NaN	NaN	NaN	0.63698	1	9497	9497		3.9685	0.81517	1	3167.3			3735	5575	2204	2238	2927	2927					0.049690356538803826
ELLQQYNRG	9	Unmodified	_ELLQQYNRG_					0	0	0			REV__SURF6|p.R237Q|1|0.15|ENSG00000148296|chr9:133332245-133332245|C/T|missense_variant	REV__SURF6|p.R237Q|1|0.15|ENSG00000148296|chr9:133332245-133332245|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.79091221825	2	560.790912	1119.56727	1.6283	0.00091315	-10.613	-0.0059516	-8.9846	-0.0050385	560.7859547526821	20.285	0.21636	20.285	20.213	20.429	0	1209	79	0.892844	0.047816634	0.892844	362.02036	0	19.388153						355	10	5	NaN	NaN	NaN	0.51576	1	13650	13650		8.962	2.5321	1	41938	+		3736	13342	2205	2239	2928	2928					0.012270558408545185
ELLWYLLEM	9	Unmodified	_ELLWYLLEM_					0	0	0			REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.31484291575	2	605.314843	1208.61513	1.7085	0.0010342	3.9303	0.0023791	5.6389	0.0034133	605.3173122089875	19.108	0.19192	19.108	19.06	19.252	0	1149	85	0.92958635	0.051400423	0.92958635	376.58023	0	20.82257						494	9	5	NaN	NaN	NaN	0.056143	1	16699	16699		44.302	9.8484	1	140520	+		3737	12516	2206	2240	2929	2929					0.01916993716668003
ELLWYLLEM	9	Unmodified						0	0	0			REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.314843	1208.61513	1.7085	0.0010342	3.9303	0.0023791	5.6389	0.0034133	605.3173122089875	19.108	0.19192	19.108	19.06	19.252	0	1149	85	0.92958635	0.051400423	0.92958635	376.58023		20.82257	-0.05188	-0.00040788	0.00075972	NaN	44.302	494	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140520	+		3738	12516	2206	2240							0.01916993716668003
ELLWYLLEM	9	Oxidation (M)	_ELLWYLLEM(Oxidation (M))_		ELLWYLLEM(1)		ELLWYLLEM(44)	0	0	1			REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3123002268	2	613.3123	1224.61005	1.5037	0.00092222	4.9249	0.0030205	6.4286	0.0039427	613.3155603558251	16.23	0.28801	16.23	16.182	16.47	0	1113	115	0.9515937	0.06970507	0.9515937	385.43866	0	28.233734						754	13	5	NaN	NaN	NaN	0.056143	1	17090	17090		44.302	6.1715	1	210510	+		3739	12516	2206	2241	2930	2930		655			0.0067268985403643455
ELLWYLLEM	9	Oxidation (M)						0	0	1			REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.3123	1224.61005	1.5037	0.00092222	4.9249	0.0030205	6.4286	0.0039427	613.3155603558251	16.23	0.28801	16.23	16.182	16.47	0	1113	115	0.9515937	0.06970507	0.9515937	385.43866		28.233734	-0.040016	9.4496E-05	0.00075972	NaN	44.302	754	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210510	+		3740	12516	2206	2241				655			0.0067268985403643455
ELLWYLLEM	9	Oxidation (M)						0	0	1			REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	REV__ENST00000559598.6_1_16:54954310-54959048:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	613.3123	1224.61005	1.7829	0.0010935	4.7639	0.0029217	6.5468	0.0040152	613.3155384571934	16.323	0.23978	16.31	16.214	16.454	-0.012995	1113	106	0.9515937	0.06419164	0.95007426	385.43866		26.00055	0.040016	-0.00010305	-0.00075972	NaN	44.302	699	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216180	+		3741	12516	2206	2241				655			0.0067268985403643455
ELLYLPDLTL	10	Unmodified	_ELLYLPDLTL_					0	0	0		chr3:189869406-189871747|280|27.48|0.14|7.65|+|0|TP63,None|1	chr3:189869406-189871747|280|27.48|0.14|7.65|+|0|TP63,None|1	chr3:189869406-189871747|280|27.48|0.14|7.65|+|0|TP63,None|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3393722570501	2	595.339372	1188.66419	0.71705	0.00042689	-1.0629	-0.00063281	-0.3459	-0.00020593	595.338513501089	29.593	0.12067	29.586	29.538	29.659	-0.0070667	1203	40	0.8965218	0.02390188	0.89500237	363.25446	0	9.684601						125	6	3	NaN	NaN	NaN	0.44258	1	15519	15519		21.835	4.9767	1	16785			3742	142	2207	2242	2931	2931					0.07740605277285795
ELMGPGLEI	9	Unmodified	_ELMGPGLEI_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4913951919001	1	958.491395	957.484119	1.9274	0.0018474	0.94351	0.00090435	2.8709	0.0027518	958.4917957980175	29.376	0.072374	29.368	29.344	29.417	-0.0077229	318	52	1.4304334	0.030277252	1.428914	290.59857	0	6.15094						65	4	2	NaN	NaN	NaN	0.39244	1	7137	7137		14.042	1.4537	1	3739.8	+		3743	13424	2208	2243	2932	2932					0.0036760306863925507
ELMPRRAWG	9	Unmodified	_ELMPRRAWG_					0	0	0			REV__ENSG00000100439|ENST00000428304|ABHD4	REV__ENSG00000100439|ENST00000428304|ABHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2925678377001	2	558.292568	1114.57058	0.7818	0.00043647	-2.1255	-0.0011866	-1.3436	-0.00075015	558.2921277511822	37.891	0.072083	37.891	37.867	37.939	0	1224	43	0.883646	0.025755763	0.883646	358.31036	0	10.443726						56	4	2	NaN	NaN	NaN	0.56671	1	13462	13462		6.8632	0	1	3847.9	+		3744	8819	2209	2244	2933	2933					0.017880274138633467
ELNLAVLM	8	Unmodified	_ELNLAVLM_					0	0	0			REV__ENST00000419810.6_1_2:10563224-10563620:+|nuORF	REV__ENST00000419810.6_1_2:10563224-10563620:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.5015659477001	1	902.501566	901.494289	1.5639	0.0014115	-0.26231	-0.00023674	1.3016	0.0011747	902.5001541236186	30.1	0.072374	30.094	30.07	30.142	-0.0064106	315	55	1.4322147	0.032066822	1.4306953	291.21667	0	6.520233						87	4	2	NaN	NaN	NaN	0.78546	1	5989	5989		11.17	0.56537	1	7763.2	+		3745	12102	2210	2245	2934	2934					0.0396021079387765
ELNPIVLLL	9	Unmodified	_ELNPIVLLL_					0	0	0		nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000162687|Q6UVM3-3|KCNT2	nc|ENSG00000162687|Q6UVM3-3|KCNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.6448593665001	1	1023.64486	1022.63758	1.9794	0.0020262	-0.62116	-0.00063584	1.3583	0.0013904	1023.6436604712361	37	0.14443	37	36.952	37.097	0	81	85	1.5705823	0.049481153	1.5705823	318.78198	0	10.043213						346	7	4	NaN	NaN	NaN	0.030696	1	9475	9475		58.2	2.608	1	46118			3746	4161	2211	2246	2935	2935					0.12716961176613495
ELNRDLCKAH	10	Unmodified	_ELNRDLCKAH_					0	0	0		ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8034966647501	2	599.803497	1197.59244	1.2442	0.00074627	-10.905	-0.0065406	-9.6604	-0.0057943	599.7981554390934	15.174	0.07212	15.174	15.15	15.222	0	1200	34	0.89836043	0.020222485	0.89836043	363.96832	0	8.193085						67	4	2	NaN	NaN	NaN	0.71559	1	16389	16389		6.9844	1.2902	1	7250.5			3747	2635	2212	2247	2936	2936					0.001547873717981929
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7925892399501	2	575.792589	1149.57063	0.71713	0.00041292	-3.6121	-0.0020798	-2.895	-0.0016669	575.790293370899	33.43	0.31371	33.428	33.283	33.597	-0.0018501	1203	70	0.8965218	0.042297065	0.89500237	363.39615	0	17.144714						360	14	3	NaN	NaN	NaN	0.27608	1	14278	14278		20.449	2.479	1	117020			3748	3079	2213	2248	2937	2937					0.0018230589485028759
ELPEQQMGQ	9	Unmodified	_ELPEQQMGQ_					0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2424062541501	2	530.242406	1058.47026	0.48843	0.00025899	3.7826	0.0020057	4.2711	0.0022647	530.2448129112748	32.175	0.096485	32.172	32.123	32.22	-0.0037613	1296	49	0.8394264	0.02951163	0.83790696	340.59998	0	11.974457						89	5	2	NaN	NaN	NaN	0.41766	1	10774	10774		13.003	0	1	9843.6			3749	4209	2214	2249	2938	2938					-0.05663674430456922
ELPEQQMGQ	9	Unmodified						0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.242406	1058.47026	1.2673	0.00067195	2.144	0.0011368	3.4112	0.0018088	530.243281590644	32.177	0.096519	32.177	32.152	32.249	0	1296	40	0.8394264	0.02398467	0.8394264	340.59998		9.731873	0.0024357	-0.0007451	0.00075972	NaN	13.003	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7916.6			3750	4209	2214	2249							-0.05663674430456922
ELPLAIVVL	9	Unmodified	_ELPLAIVVL_					0	0	0		ENST00000396623.7_1_8:67380599-67380680:+|nuORF	ENST00000396623.7_1_8:67380599-67380680:+|nuORF	ENST00000396623.7_1_8:67380599-67380680:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.6233956429002	1	966.623396	965.616119	1.4328	0.0013849	2.1645	0.0020922	3.5972	0.0034772	966.6271329475167	36.758	0.048096	36.759	36.711	36.759	0.0016747	222	52	1.4873441	0.030180931	1.4858247	302.12415	0	6.1306458						74	3	2	NaN	NaN	NaN	0.03623	1	7366	7366		52.758	16.722	1	6716.6			3751	6798	2215	2250	2939	2939					0.13193576147898511
ELPSPLDSS	9	Unmodified	_ELPSPLDSS_					0	0	0			REV__ENSG00000052850|ENST00000652299|ALX4	REV__ENSG00000052850|ENST00000652299|ALX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4571181756002	1	944.457118	943.449842	1.2863	0.0012149	4.254	0.0040177	5.5403	0.0052326	944.4604301035109	24.381	0.048258	24.381	24.381	24.43	0	333	46	1.4215236	0.02674079	1.4215236	288.84943	0	5.433655						58	3	2	NaN	NaN	NaN	0.66529	1	6900	6900		2.1763	0	1	4320.5	+		3752	8497	2216	2251	2940	2940					-0.024145218186049533
ELQAQPDI	8	Unmodified	_ELQAQPDI_					0	0	0			REV__ENST00000559662.5_1_11:125221201-125267773:+|nuORF	REV__ENST00000559662.5_1_11:125221201-125267773:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.4625379045	1	913.462538	912.455261	2.1673	0.0019797	-0.69989	-0.00063933	1.4674	0.0013404	913.461416159962	26.143	0.14481	26.131	26.083	26.228	-0.011137	372	49	1.3983358	0.028558373	1.3968164	284.2766	0	5.8058167						133	7	2	NaN	NaN	NaN	0.47456	1	6156	6156		32.453	1.8426	1	14018	+		3753	10384	2217	2252	2941	2941					-0.004467982361461509
ELQILTHSHVE	11	Unmodified	_ELQILTHSHVE_					0	0	0			REV__ENSG00000135314|ENST00000257765|KHDC1	REV__ENSG00000135314|ENST00000257765|KHDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.34350889475	2	653.343509	1304.67246	1.127	0.00073634	-1.1784	-0.00076989	-0.051347	-3.3547E-05	653.3420251416389	19.539	0.024073	19.524	19.524	19.549	-0.014143	1131	55	0.94059354	0.033014596	0.93907416	380.72244	0	13.363251						55	2	2	NaN	NaN	NaN	0.67772	1	18020	18020		8.9191	0.64155	1	7412.2	+		3754	9610	2218	2253	2942	2942					0.032315522465978574
ELQILTHSHVE	11	Unmodified						0	0	0			REV__ENSG00000135314|ENST00000257765|KHDC1	REV__ENSG00000135314|ENST00000257765|KHDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	653.343509	1304.67246	1.127	0.00073634	-1.1784	-0.00076989	-0.051347	-3.3547E-05	653.3420251416389	19.539	0.024073	19.524	19.524	19.549	-0.014143	1131	55	0.94059354	0.033014596	0.93907416	380.72244		13.363251	-0.0078082	0.00039085	-0.00075972	NaN	8.9191	55	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7412.2	+		3755	9610	2218	2253							0.032315522465978574
ELQNTRFN	8	Unmodified	_ELQNTRFN_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.25670526015006	2	511.256705	1020.49886	1.8344	0.00093784	4.1879	0.0021411	6.0223	0.0030789	511.2589459911638	19.228	0.096024	19.228	19.18	19.276	0	1287	43	0.8449601	0.025819898	0.8449601	343.0091	0	10.481506						95	5	2	NaN	NaN	NaN	0.65542	1	9384	9384		21.835	5.2508	1	13655	+		3756	11142	2219	2254	2943	2943					-0.010571887389914991
ELQQAPQA	8	Unmodified	_ELQQAPQA_					0	0	0		ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.4472221913	1	884.447222	883.439946	2.1553	0.0019062	5.1863	0.004587	7.3416	0.0064932	884.4535662168016	27.783	0.048254	27.774	27.75	27.798	-0.009552	357	49	1.407258	0.028546333	1.4057386	286.23	0	5.806183						53	3	2	NaN	NaN	NaN	0.6053	1	5722	5722		24.961	4.5124	1	2694.2			3757	5934	2220	2255	2944	2944					-0.006436650333284888
ELQRPWGL	8	Unmodified	_ELQRPWGL_					0	0	0			REV__ENST00000559332.1_1_15:78578005-78578462:-|nuORF	REV__ENST00000559332.1_1_15:78578005-78578462:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.7745338725501	2	499.774534	997.534515	1.1419	0.00057069	5.3498	0.0026737	6.4917	0.0032444	499.7764264267296	21.778	0.12032	21.764	21.74	21.86	-0.013895	1314	76	0.8283535	0.04613936	0.8268341	336.37067	0	18.7359						189	6	3	NaN	NaN	NaN	0.6053	1	8309	8309		24.961	0.56077	1	21036	+		3758	12779	2221	2256	2945	2945					0.03564893508678324
ELRQEAEE	8	Unmodified	_ELRQEAEE_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.238178156	2	502.238178	1002.4618	0.96109	0.0004827	5.6917	0.0028586	6.6528	0.0033413	502.2430206495121	32.103	0.072414	32.099	32.075	32.148	-0.0037575	1320	43	0.824661	0.02584505	0.8231416	334.84885	0	10.494232						76	4	3	NaN	NaN	NaN	0.83211	1	8508	8508		4.9097	0	1	5398.6			3759	4783	2222	2257	2946	2946					-0.039329050754190575
ELRQEAEE	8	Unmodified						0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.238178	1002.4618	1.2382	0.00062187	5.4255	0.0027249	6.6637	0.0033467	502.7419315452433	32.104	0.07238	32.104	32.104	32.177	0	1320	49	0.824661	0.029533982	0.824661	334.84885		11.992096	0.0024214	-0.00010266	0.00075972	NaN	4.9097	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5453.6			3760	4783	2222	2257							-0.039329050754190575
ELSADELLV	9	Unmodified	_ELSADELLV_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5197184324002	1	988.519718	987.512442	2.1505	0.0021258	1.7017	0.0016822	3.8522	0.003808	988.5215605212999	30.198	0.096498	30.198	30.198	30.294	0	216	70	1.4908947	0.040832996	1.4908947	302.7509	0	8.29184						90	5	2	NaN	NaN	NaN	0.12945	1	8128	8128		31.561	1.9627	1	14495	+		3761	9157	2223	2258	2947	2947					0.018186242495858096
ELSEDEKKEL	10	Unmodified	_ELSEDEKKEL_					0	0	0		tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	tr|U7SXZ5|U7SXZ5_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00892PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3062577212	2	610.306258	1218.59796	0.66453	0.00040557	5.3635	0.0032734	6.028	0.0036789	610.3090546205215	26.697	0.19304	26.687	26.566	26.759	-0.010645	1146	76	0.93142134	0.0458858	0.9299019	377.2887	0	18.586853						172	9	2	NaN	NaN	NaN	0.60059	1	16267	16267		14.854	1.8512	1	30234			3762	13917	2224	2259	2948	2948					-0.0025925535542228317
ELSEEKQI	8	Unmodified	_ELSEEKQI_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;ENST00000252134.11_1_22:18273500-18274125:-|nuORF	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.25329690395	2	488.253297	974.492041	1.2924	0.000631	-7.6159	-0.0037185	-6.3236	-0.0030875	488.249389592878	21.898	0.21675	21.884	21.836	22.053	-0.013895	1311	52	0.83019954	0.031381547	0.8286801	337.22876	0	12.747253						308	10	4	NaN	NaN	NaN	0.39717	1	7577	7577		36.586	0	1	73050			3763	6084	2225	2260	2949	2949					0.0037745358977190335
ELSGAGGG	8	Unmodified	_ELSGAGGG_					0	0	0		ENST00000513322.5_1_5:115176765-115176948:-|nuORF	ENST00000513322.5_1_5:115176765-115176948:-|nuORF	ENST00000513322.5_1_5:115176765-115176948:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.2994953216003	1	647.299495	646.292219	0.97015	0.00062798	5.3182	0.0034425	6.2883	0.0040704	647.3025850232754	33.624	0.12068	33.624	33.6	33.721	0	1356	64	0.8024889	0.038811624	0.8024889	164.13805	0	7.938385						127	6	3	NaN	NaN	NaN	0.84945	1	1947	1947		0	0	1	14462			3764	7366	2226	2261	2950	2950					-0.04507556567307347
ELSGAGGG	8	Unmodified	_ELSGAGGG_					0	0	0		ENST00000513322.5_1_5:115176765-115176948:-|nuORF	ENST00000513322.5_1_5:115176765-115176948:-|nuORF	ENST00000513322.5_1_5:115176765-115176948:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.2994953216003	1	647.299495	646.292219	0.80531	0.00052127	5.383	0.0034844	6.1883	0.0040057	647.3029049421464	33.623	0.14476	33.621	33.597	33.742	-0.0018501	1353	61	0.8043377	0.036957502	0.80281824	164.51619	0	7.559143						126	7	3	NaN	NaN	NaN	0.84945	1	1850	1850		0	0	1	14622			3765	7366	2226	2261	2951	2951					-0.04507556567307347
ELSGTLSL	8	Unmodified	_ELSGTLSL_					0	0	0		nc|ENSG00000153561|Q9H871-2|RMND5A;ENSG00000153561|ENST00000283632|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	nc|ENSG00000153561|Q9H871-2|RMND5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.4458252078001	1	819.445825	818.438549	2.3843	0.0019538	-1.0484	-0.00085909	1.3359	0.0010947	819.4445502576418	25.25	0.048227	25.238	25.214	25.262	-0.012011	471	40	1.3393306	0.023284197	1.3378111	272.7454	0	4.7416687						57	3	2	NaN	NaN	NaN	0.30832	1	4891	4891		41.46	5.4237	1	4046.4			3766	3812	2227	2262	2952	2952					0.022067008779117714
ELSLAIMI	8	Unmodified	_ELSLAIMI_					0	0	0		RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.5063169746	1	889.506317	888.499041	1.3815	0.0012288	1.141	0.0010149	2.5225	0.0022438	889.5069925863598	34.083	0.072456	34.083	34.059	34.131	0	306	43	1.4375578	0.024930239	1.4375578	292.36734	0	5.0702515						57	4	2	NaN	NaN	NaN	0.40747	1	5922	5922		36.036	2.338	1	3756.9			3767	13659	2228	2263	2953	2953					0.05033094936629823
ELSLGQVSR	9	Unmodified	_ELSLGQVSR_					0	0	0			REV__ENST00000302118.5_1_1:55505238-55505292:+|nuORF	REV__ENST00000302118.5_1_1:55505238-55505292:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5421852090002	1	988.542185	987.534909	0.87335	0.00086334	1.2638	0.0012494	2.1372	0.0021127	988.5449331905772	33.527	0.19305	33.525	33.501	33.694	-0.0018501	189	97	1.5068626	0.056778073	1.5053432	305.99335	0	11.529724						223	9	2	NaN	NaN	NaN	0.54912	1	7974	7974		7.5876	0	1	39540	+		3768	11659	2229	2264	2954	2954					0.04064268437866758
ELSLGQVSR	9	Unmodified						0	0	0			REV__ENST00000302118.5_1_1:55505238-55505292:+|nuORF	REV__ENST00000302118.5_1_1:55505238-55505292:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	988.542185	987.534909	0.87335	0.00086334	1.2638	0.0012494	2.1372	0.0021127	988.5449331905772	33.527	0.19305	33.525	33.501	33.694	-0.0018501	189	97	1.5068626	0.056778073	1.5053432	305.99335		11.529724	-0.0016087	0.00019187	0.00012701	NaN	7.5876	223	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39540	+		3769	11659	2229	2264							0.04064268437866758
ELSMKIYFS	9	Unmodified	_ELSMKIYFS_					0	0	0		ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2835427873501	2	559.283543	1116.55253	1.1499	0.00064311	-5.4895	-0.0030702	-4.3396	-0.0024271	559.2818350312057	32.78	0.16892	32.78	32.756	32.925	0	1239	70	0.87444305	0.042333663	0.87444305	354.57098	0	17.165527						161	8	3	NaN	NaN	NaN	0.62619	1	13526	13526		4.4131	0	1	15265			3770	5221	2230	2265	2955	2955					-0.0010815235148129432
ELSSLLDP	8	Unmodified	_ELSSLLDP_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4563898941002	1	873.45639	872.449113	1.5147	0.001323	-0.13729	-0.00011992	1.3774	0.0012031	873.4567013325569	26.746	0.072889	26.746	26.722	26.795	0	375	43	1.3965509	0.024991274	1.3965509	284.10712	0	5.0841064						59	4	2	NaN	NaN	NaN	0.84455	1	5699	5699		2.7852	0	1	3734.1			3771	1920	2231	2266	2956	2956					0.00778683532348623
ELSTQAPLL	9	Unmodified	_ELSTQAPLL_					0	0	0			REV__ENST00000468890.1_1_10:115614631-115618462:+|nuORF	REV__ENST00000468890.1_1_10:115614631-115618462:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.27403234605	2	486.274032	970.533512	1.614	0.00078484	-0.041026	-1.995E-05	1.573	0.00076489	486.2740684401957	19.755	0.16846	19.741	19.693	19.861	-0.014141	1338	91	0.81357855	0.05537623	0.8120591	330.496	0	22.495209						313	8	2	NaN	NaN	NaN	0.14787	1	7485	7485		28.896	3.0946	1	42566	+		3772	11123	2232	2267	2957	2957					0.0470663434908829
ELSVTGTK	8	Unmodified	_ELSVTGTK_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	834.4567242451003	1	834.456724	833.449448	1.4104	0.0011769	4.3604	0.0036386	5.7708	0.0048155	834.4607466137346	32.177	0.048298	32.177	32.152	32.201	0	447	46	1.3536539	0.02684927	1.3536539	275.58026	0	5.466034						65	3	2	NaN	NaN	NaN	0.82332	1	5179	5179		6.0903	0	1	5281.2	+		3773	10560	2233	2268	2958	2958					0.026061032522193273
ELSYLDIAIKL	11	Unmodified	_ELSYLDIAIKL_					0	0	0		tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.3712037017	2	639.371204	1276.72785	2.0702	0.0013236	4.6492	0.0029726	6.7195	0.0042962	639.8764877049264	32.2	0.048244	32.196	32.196	32.244	-0.0037613	1113	25	0.9515937	0.014662087	0.95007426	385.26324	0	5.9361267						48	3	3	NaN	NaN	NaN	0.69656	1	17541	17541		7.6826	2.9535	1	2858.2			3774	13939	2234	2269	2959	2959					0.10055965714354898
ELSYLDIAIKL	11	Unmodified						0	0	0		tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	tr|U7T0H8|U7T0H8_FUSNUDUF421domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00701PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.371204	1276.72785	1.6419	0.0010498	5.4195	0.0034651	7.0614	0.0045149	639.3747544614304	32.177	0.024151	32.177	32.177	32.201	0	1113	25	0.9515937	0.014663696	0.9515937	385.26324		5.936737	-0.009632	0.00041068	0.00075972	NaN	7.6826	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2387.8			3775	13939	2234	2269							0.10055965714354898
ELTAVVQKR	9	Unmodified	_ELTAVVQKR_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.3140231738001	2	522.314023	1042.61349	2.002	0.0010457	-3.4143	-0.0017833	-1.4123	-0.00073768	522.3124298082752	13.589	0.096037	13.589	13.565	13.661	0	1230	34	0.8799654	0.020246506	0.8799654	357.1186	0	8.216705						99	5	3	NaN	NaN	NaN	0.23112	1	10337	10337		23.334	13.588	1	9145.6			3776	3667	2235	2270	2960	2960					0.09389120742957857
ELTAVVQKR	9	Unmodified	_ELTAVVQKR_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.3140231738001	2	522.314023	1042.61349	1.4308	0.00074735	-0.96204	-0.00050249	0.4688	0.00024486	522.3141321194856	13.613	0.095914	13.603	13.579	13.675	-0.010098	1230	37	0.8799654	0.022085905	0.878446	357.11856	0	8.963165						89	5	3	NaN	NaN	NaN	0.25448	1	10134	10134		21.835	4.0547	1	9285.4			3777	3667	2235	2270	2961	2961					0.09389120742957857
ELTEVFLARCV	11	Unmodified	_ELTEVFLARCV_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.22867925189996	3	427.228679	1278.66421	1.321	0.00056439	-2.4108	-0.00103	-1.0897	-0.00046556	427.2274014653839	15.198	0.096082	15.198	15.174	15.27	0	1455	43	0.7413668	0.025974154	0.7413668	450.2148	0	15.773529						102	5	3	NaN	NaN	NaN	0.73309	1	18394	18394		5.2847	0.2678	1	7247.5	+		3778	11255	2236	2271	2962	2962					0.036022820056359706
ELTGPEYAQRF	11	Unmodified	_ELTGPEYAQRF_					0	0	0		tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.5506983634666	3	437.550698	1309.63027	1.4027	0.00061373	5.392	0.0023593	6.7947	0.002973	437.88708318418077	18.986	0.048067	18.972	18.948	18.996	-0.014059	1407	55	0.77102906	0.03334111	0.7695096	468.10983	0	20.242188						81	3	2	NaN	NaN	NaN	0.73894	1	18098	18098		4.9007	0.28327	1	8464.9			3779	13962	2237	2272	2963	2963					-0.012164231617816768
ELTPMLLQL	9	Unmodified	_ELTPMLLQL_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.3017355405001	2	529.301736	1056.58892	0.41706	0.00022075	-1.7901	-0.0009475	-1.373	-0.00072675	529.300837855373	31.5	0.096535	31.495	31.447	31.544	-0.0044174	1245	55	0.87076044	0.033157587	0.869241	353.322	0	13.454102						142	5	3	NaN	NaN	NaN	0.21199	1	10728	10728		24.562	2.727	1	13012	+		3780	9985	2238	2273	2964	2964					0.06288724545220248
ELTPMLLQL	9	Unmodified						0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.301736	1056.58892	0.41706	0.00022075	-1.7901	-0.0009475	-1.373	-0.00072675	529.300837855373	31.5	0.096535	31.495	31.447	31.544	-0.0044174	1245	55	0.87076044	0.033157587	0.869241	353.322		13.454102	-0.0027401	-0.00077871	0.00016107	NaN	24.562	142	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13012	+		3781	9985	2238	2273							0.06288724545220248
ELTYTCPAR	9	Unmodified	_ELTYTCPAR_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5033568616998	1	1053.50336	1052.49608	1.3413	0.001413	-10.638	-0.011207	-9.2963	-0.0097937	1053.4925653168395	34.251	0.16871	34.249	34.201	34.37	-0.0012474	153	67	1.5281296	0.038960457	1.5266101	310.04825	0	7.904846						286	8	4	NaN	NaN	NaN	0.51576	1	10500	10500		8.962	1.4216	1	37625	+		3782	8584	2239	2274	2965	2965					-0.028067801881888954
ELTYTCPAR	9	Unmodified						0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1053.50336	1052.49608	1.8775	0.0019779	-10.418	-0.010975	-8.5401	-0.008997	1053.4934250256022	34.252	0.1206	34.252	34.228	34.348	0	156	73	1.5263584	0.042511344	1.5263584	309.68887		8.625305	0.001177	0.00012828	-0.00012589	NaN	8.962	246	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36690	+		3783	8584	2239	2274							-0.028067801881888954
ELTYTCPAR	9	Unmodified						0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1053.50336	1052.49608	1.3413	0.001413	-10.638	-0.011207	-9.2963	-0.0097937	1053.4925653168395	34.251	0.16871	34.249	34.201	34.37	-0.0012474	153	67	1.5281296	0.038960457	1.5266101	310.04825		7.904846	-0.001177	-0.00010346	0.00012589	NaN	8.962	286	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37625	+		3784	8584	2239	2274							-0.028067801881888954
ELVEEQLLI	9	Unmodified	_ELVEEQLLI_					0	0	0			REV__ENST00000378116.8_1_10:15256501-15262974:-|nuORF	REV__ENST00000378116.8_1_10:15256501-15262974:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3080721286501	2	543.308072	1084.60159	1.5634	0.0008494	-9.4637	-0.0051417	-7.9003	-0.0042923	543.3028228720501	26.891	0.26553	26.88	26.832	27.097	-0.010643	1212	73	0.8910048	0.044162333	0.88948536	361.41623	0	17.913452						515	12	5	NaN	NaN	NaN	0.032826	1	11866	11866		55.413	5.4518	1	261750	+		3785	11948	2240	2275	2966	2966					0.06267459209107074
ELVEQTLSDL	10	Unmodified	_ELVEQTLSDL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7980685483501	2	573.798069	1145.58158	1.7427	0.00099994	-5.4296	-0.0031155	-3.6869	-0.0021155	573.794816250212	27.084	0.2413	27.084	27.06	27.302	0	1191	91	0.90387505	0.055143297	0.90387505	366.39185	0	22.352692						626	11	4	NaN	NaN	NaN	0.12649	1	14647	14647		42.318	2.1638	1	270930			3786	3460	2241	2276	2967	2967					0.014616634784943017
ELVFDMQLRP	10	Unmodified	_ELVFDMQLRP_					0	0	0			REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3262732693	2	624.326273	1246.63799	1.0636	0.00066405	-1.6208	-0.0010119	-0.55717	-0.00034786	624.3249833580433	34.154	0.07246	34.153	34.129	34.201	-0.0012474	1143	34	0.9332562	0.020178854	0.93173677	377.93674	0	8.171753						72	4	3	NaN	NaN	NaN	0.77421	1	16950	16950		1.9246	0	1	4898.3	+		3787	12217	2242	2277	2968	2968					0.024540128341413947
ELVFDMQLRP	10	Unmodified						0	0	0			REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.326273	1246.63799	1.1293	0.00070504	0.97344	0.00060775	2.1027	0.0013128	624.3277167774336	34.155	0.072315	34.155	34.131	34.203	0	1143	46	0.9332562	0.027516663	0.9332562	377.9367		11.14328	0.0012279	0.0021123	0.00075972	NaN	1.9246	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5307	+		3788	12217	2242	2277							0.024540128341413947
ELVFDMQLRP	10	Unmodified						0	0	0			REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	REV__ENST00000447801.5_1_1:235299025-235301253:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.326273	1246.63799	1.0636	0.00066405	-1.6208	-0.0010119	-0.55717	-0.00034786	624.3249833580433	34.154	0.07246	34.153	34.129	34.201	-0.0012474	1143	34	0.9332562	0.020178854	0.93173677	377.93674		8.171753	-0.0012279	-0.001127	-0.00075972	NaN	1.9246	72	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4898.3	+		3789	12217	2242	2277							0.024540128341413947
ELVKYAISV	9	Unmodified	_ELVKYAISV_					0	0	0			REV__ENSG00000187997|ENST00000340363|C17orf99	REV__ENSG00000187997|ENST00000340363|C17orf99	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.30005013130005	2	511.30005	1020.58555	1.8588	0.00095039	-9.4561	-0.0048349	-7.5973	-0.0038845	511.2952207584809	25.78	0.14479	25.769	25.721	25.865	-0.0116	1284	187	0.8468043	0.11408615	0.8452849	343.7574	0	46.312927						457	7	4	NaN	NaN	NaN	0.14787	1	9216	9216		28.896	2.7806	1	58053	+		3790	11043	2243	2278	2969	2969					0.07607797762864266
ELVKYAISV	9	Unmodified						0	0	0			REV__ENSG00000187997|ENST00000340363|C17orf99	REV__ENSG00000187997|ENST00000340363|C17orf99	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.30005	1020.58555	1.8588	0.00095039	-9.4561	-0.0048349	-7.5973	-0.0038845	511.2952207584809	25.78	0.14479	25.769	25.721	25.865	-0.0116	1284	187	0.8468043	0.11408615	0.8452849	343.7574		46.312927	0.030252	0.00087266	-0.0016817	NaN	28.896	457	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58053	+		3791	11043	2243	2278							0.07607797762864266
ELVMDMFK	8	Unmodified	_ELVMDMFK_					0	0	0		nc|ENSG00000170222|Q3LIE5-3|ADPRM;ENSG00000170222|ENST00000379774|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.74573889530006	2	506.745739	1011.47692	1.7575	0.00089061	7.1423	0.0036193	8.8998	0.0045099	506.74889964196996	23.754	0.048222	23.754	23.754	23.803	0	1314	40	0.8283535	0.023995101	0.8283535	336.3076	0	9.741882						67	3	2	NaN	NaN	NaN	0.80692	1	9028	9028		8.2903	1.4271	1	10906			3792	4715	2244	2279	2970	2970					-0.02835452803424232
ELVQLYMVI	9	Unmodified	_ELVQLYMVI_					0	0	0			REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.6118446786	1	1107.61184	1106.60457	0.82857	0.00091773	-3.8729	-0.0042896	-3.0443	-0.0033719	1107.6070469499782	35.192	0.14481	35.192	35.096	35.241	0	60	70	1.582944	0.040612817	1.582944	320.9665	0	8.234894						239	7	3	NaN	NaN	NaN	0.10956	1	13139	13139		34.439	2.7633	1	25092	+		3793	10291	2245	2280	2971	2971					0.05553011062261248
ELWKSCNNF	9	Unmodified	_ELWKSCNNF_					0	0	0			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.8429362774	3	380.842936	1139.50698	1.3738	0.0005232	5.6806	0.0021634	7.0544	0.0026866	380.845641729987	32.49	0.048256	32.49	32.49	32.539	0	1491	28	0.7190863	0.016722202	0.7190863	437.25278	0	10.168213						40	3	2	NaN	NaN	NaN	0.66529	1	14420	14420		1.04	0.48307	1	3158.3	+		3794	8813	2246	2281	2972	2972					-0.05719377813898063
ELWVHGMPV	9	Unmodified	_ELWVHGMPV_					0	0	0			REV__ENSG00000148950|ENST00000532287|IMMP1L	REV__ENSG00000148950|ENST00000532287|IMMP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2707697631001	2	534.27077	1066.52699	0.45057	0.00024073	7.2191	0.003857	7.6697	0.0040977	534.2748354455819	33.213	0.12067	33.21	33.186	33.307	-0.0024757	1233	40	0.87812483	0.023927689	0.8766054	356.2674	0	9.707794						146	6	3	NaN	NaN	NaN	0.51184	1	11136	11136		9.1232	1.5356	1	17254	+		3795	9988	2247	2282	2973	2973					-0.003615820832692407
ELYDLTESTP	10	Unmodified	_ELYDLTESTP_					0	0	0			REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF	REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.27442627655	2	584.274426	1166.5343	1.6003	0.00093504	-5.7055	-0.0033336	-4.1051	-0.0023985	584.2701262867303	23.947	0.12057	23.934	23.886	24.006	-0.013048	1206	79	0.894683	0.047827005	0.89316356	362.58832	0	19.382843						237	6	4	NaN	NaN	NaN	0.68669	1	14816	14816		8.962	0	1	37778	+		3796	11992	2248	2283	2974	2974					-0.04230615792516801
ELYFRDYL	8	Unmodified	_ELYFRDYL_					0	0	0		tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7794818647001	2	559.779482	1117.54441	0.94241	0.00052754	-1.5576	-0.00087189	-0.61514	-0.00034435	559.7792295115679	31.718	0.1448	31.718	31.67	31.815	0	1254	73	0.8652351	0.044190943	0.8652351	350.8335	0	17.918427						159	7	2	NaN	NaN	NaN	0.75561	1	13578	13578		15.175	0	1	19973			3797	13871	2249	2284	2975	2975					-0.009659632766215509
ELYFRDYL	8	Unmodified						0	0	0		tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	tr|U7STY5|U7STY5_FUSNUGrpBfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01030PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.779482	1117.54441	0.57002	0.00031908	-1.9377	-0.0010847	-1.3677	-0.00076562	559.7781391656869	31.717	0.096533	31.712	31.664	31.761	-0.0044155	1254	58	0.8652351	0.034986377	0.86371565	350.83353		14.186188	-0.0027574	-0.00015841	-0.00075972	NaN	15.175	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15691			3798	13871	2249	2284							-0.009659632766215509
ELYKVAGME	9	Unmodified	_ELYKVAGME_					0	0	0			REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF	REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.26006769105	2	520.260068	1038.50558	1.928	0.0010031	-3.1278	-0.0016273	-1.1998	-0.00062419	520.2582020922471	26.36	0.19308	26.36	26.312	26.505	0	1272	79	0.854179	0.047956467	0.854179	346.67148	0	19.463287						236	9	3	NaN	NaN	NaN	0.41766	1	10131	10131		13.003	4.0409	1	21796	+		3799	12101	2250	2285	2976	2976					-0.012130119026551256
ELYKVAGME	9	Unmodified						0	0	0			REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF	REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.260068	1038.50558	1.928	0.0010031	-3.1278	-0.0016273	-1.1998	-0.00062419	520.2582020922471	26.36	0.19308	26.36	26.312	26.505	0	1272	79	0.854179	0.047956467	0.854179	346.67148		19.463287	0.0057116	0.00025583	0.0016814	NaN	13.003	236	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21796	+		3800	12101	2250	2285							-0.012130119026551256
ELYLFDVLRAD	11	Unmodified	_ELYLFDVLRAD_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.35608495375	2	677.356085	1352.69762	1.7591	0.0011915	0.1686	0.0001142	1.9277	0.0013057	677.3566364641802	22.019	0.16868	22.019	21.946	22.115	0	1101	61	0.95892316	0.036639452	0.95892316	387.99725	0	14.824951						379	8	7	NaN	NaN	NaN	0.4078	1	19577	19577		21.771	1.0834	1	101520			3801	764	2251	2286	2977	2977					0.03537607049179314
ELYLFDVLRAD	11	Unmodified	_ELYLFDVLRAD_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.35608495375	2	677.356085	1352.69762	1.1687	0.00079162	0.10366	7.0215E-05	1.2724	0.00086184	677.356043010194	22.018	0.19268	22.004	21.956	22.149	-0.013895	1098	64	0.960755	0.038469315	0.9592356	388.73846	0	15.565369						343	9	4	NaN	NaN	NaN	0.1667	1	18698	18698		33.425	0.64729	1	99057			3802	764	2251	2286	2978	2978					0.03537607049179314
ELYLFDVLRAD	11	Unmodified						0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.356085	1352.69762	1.9495	0.0013205	-3.3976	-0.0023014	-1.4481	-0.00098088	677.3561871593588	22.211	0.04825	22.197	22.173	22.222	-0.013731	1098	28	0.960755	0.016486824	0.9592356	388.7385		6.670868	0.089403	-0.0045252	0.00015622	NaN	21.771	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2398.9			3803	764	2251	2286							0.03537607049179314
ELYLKGNEL	9	Unmodified	_ELYLKGNEL_					0	0	0		GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA	GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant	GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.7925892399501	2	539.792589	1077.57063	1.9285	0.001041	7.699	0.0041559	9.6275	0.0051969	539.7969826617694	22.742	0.096466	22.742	22.718	22.814	0	1248	58	0.8689189	0.034986377	0.8689189	352.48636	0	14.192596						169	5	3	NaN	NaN	NaN	0.16939	1	11868	11868		27.296	1.1813	1	30614			3804	5401	2252	2287	2979	2979					0.03494305894855643
EMALNLAEELK	11	Unmodified	_EMALNLAEELK_					0	0	0			REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001-8|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.8288457479999	2	630.828846	1259.64314	1.7083	0.0010776	4.095	0.0025832	5.8033	0.0036609	630.8317785955844	22.525	0.096375	22.525	22.477	22.573	0	1125	34	0.9442611	0.020167947	0.9442611	382.35004	0	8.166412						73	5	2	NaN	NaN	NaN	0.57257	1	17992	17992		15.822	1.3969	1	7569.6	+		3805	10041	2253	2288	2980	2980					0.023702719060793243
EMCEHAQMF	9	Unmodified	_EMCEHAQMF_					0	0	0			REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2117372899501	2	563.211737	1124.40892	1.0582	0.00059598	6.7243	0.0037872	7.7825	0.0043832	563.215551903869	28.145	0.14485	28.137	28.088	28.233	-0.0089798	1224	46	0.883646	0.027602911	0.88212657	358.27203	0	11.191528						167	7	4	NaN	NaN	NaN	0.64666	1	13423	13423		3.5698	0.35817	1	23014	+		3806	13194	2254	2289	2981	2981					-0.14830645725737668
EMCEHAQMF	9	Unmodified						0	0	0			REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.211737	1124.40892	1.0582	0.00059598	6.7243	0.0037872	7.7825	0.0043832	563.215551903869	28.145	0.14485	28.137	28.088	28.233	-0.0089798	1224	46	0.883646	0.027602911	0.88212657	358.27203		11.191528	-0.0048472	0.00023108	-0.00075972	NaN	3.5698	167	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23014	+		3807	13194	2254	2289							-0.14830645725737668
EMEDQTNDVH	10	Unmodified	_EMEDQTNDVH_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.4961533866666	3	406.496153	1216.46663	0.44205	0.00017969	6.4091	0.0026053	6.8512	0.002785	406.8327071656861	35.217	0.048237	35.217	35.168	35.217	0	1470	28	0.7320868	0.016707659	0.7320868	444.82166	0	10.151703						38	3	2	NaN	NaN	NaN	0.77318	1	16894	16894		0.81135	0	1	3174.4			3808	5642	2255	2290	2982	2982					-0.13294388994972905
EMEEKYYRF	9	Unmodified	_EMEEKYYRF_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.1972676731666	3	432.197268	1293.56997	1.7158	0.00074155	-1.5974	-0.0006904	0.11834	5.1144E-05	432.19764040735214	17.933	0.11991	17.933	17.909	18.029	0	1437	40	0.7524962	0.024107158	0.7524962	456.91724	0	14.637909						99	6	3	NaN	NaN	NaN	0.12328	1	18646	18646		23.086	17.801	1	8249.1			3809	4708	2256	2291	2983	2983					-0.06506856816531581
EMEEKYYRF	9	Unmodified	_EMEEKYYRF_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.79226327645	2	647.792263	1293.56997	2.1085	0.0013659	-1.6377	-0.0010609	0.47084	0.00030501	647.7917505807403	17.978	0.144	17.964	17.94	18.084	-0.013786	1158	46	0.92408	0.027531445	0.9225606	374.07193	0	11.144867						148	7	3	NaN	NaN	NaN	0.44082	1	17810	17810		12.049	6.1289	1	12290			3810	4708	2256	2291	2984	2984					-0.06506856816531581
EMEEKYYRF	9	Unmodified	_EMEEKYYRF_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.1972676731666	3	432.197268	1293.56997	1.8119	0.00078309	0.37802	0.00016338	2.1899	0.00094647	432.197610101589	18.002	0.12	17.988	17.94	18.06	-0.013786	1434	34	0.75435036	0.020396113	0.7528309	458.0431	0	12.3845825						106	6	3	NaN	NaN	NaN	0.66529	1	17811	17811		1.04	0.33182	1	7470.2			3811	4708	2256	2291	2985	2985					-0.06506856816531581
EMEPVVAKTM	10	Unmodified	_EMEPVVAKTM_					0	0	0			REV__ENST00000557812.1_1_14:24459502-24470152:+|nuORF	REV__ENST00000557812.1_1_14:24459502-24470152:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.78030999415	2	567.78031	1133.54607	1.9399	0.0011015	-11.39	-0.0064672	-9.4505	-0.0053658	568.2744998332043	28.46	0.24134	28.46	28.388	28.629	0	1221	82	0.885486	0.049679935	0.885486	358.9831	0	20.140656						536	11	5	NaN	NaN	NaN	0.58645	1	14218	14218		15.822	1.3969	1	65245	+		3812	10144	2257	2292	2986	2986					-0.015364135745357999
EMESCSQNSSA	11	Unmodified	_EMESCSQNSSA_					0	0	0		SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.4779939161667	3	391.477994	1171.41215	0.89665	0.00035102	-0.55483	-0.00021721	0.34182	0.00013382	391.81173122520823	31.886	0.12063	31.881	31.833	31.954	-0.0044155	1506	37	0.70979416	0.022309542	0.7082747	431.46225	0	13.56131						97	6	3	NaN	NaN	NaN	0.76975	1	14975	14975		2.0359	0.33737	1	6183.2			3813	1883	2258	2293	2987	2987					-0.16669724138023412
EMESCSQNSSA	11	Unmodified						0	0	0		SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	391.477994	1171.41215	0.84853	0.00033218	-0.12126	-4.747E-05	0.72727	0.00028471	391.8119378319743	31.887	0.12068	31.887	31.863	31.983	0	1506	28	0.70979416	0.016731262	0.70979416	431.46225		10.17041	0.0027299	0.00031598	0.00075972	NaN	2.0359	84	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5939.4			3814	1883	2258	2293							-0.16669724138023412
EMINLMVS	8	Unmodified	_EMINLMVS_					0	0	0			REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000273079|ENST00000609686|GRIN2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4529011956001	1	936.452901	935.445625	1.8147	0.0016994	-1.3827	-0.0012948	0.43207	0.00040461	936.4521829304008	22.79	0.14471	22.79	22.718	22.863	0	360	64	1.405474	0.037461042	1.405474	285.62338	0	7.612915						175	7	3	NaN	NaN	NaN	0.73961	1	6728	6728		16.584	1.4088	1	17461	+		3815	11415	2259	2294	2988	2988					-0.02468025837526966
EMKMYFMFI	9	Unmodified	_EMKMYFMFI_					0	0	0			REV__ENST00000413765.6_1_7:107834744-107836232:-|nuORF	REV__ENST00000413765.6_1_7:107834744-107836232:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.2841739515501	2	620.284174	1238.55379	0.39646	0.00024592	-2.7847	-0.0017273	-2.3883	-0.0014814	620.7849825363239	33.913	0.14475	33.911	33.863	34.008	-0.0012474	1164	97	0.9204082	0.05873698	0.91888875	372.76038	0	23.788177						379	7	4	NaN	NaN	NaN	0.2961	1	16751	16751		19.164	4.7386	1	41338	+		3816	12078	2260	2295	2989	2989					-0.055939775786100654
EMKSMFGTLS	10	Unmodified	_EMKSMFGTLS_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.7646599299502	2	565.76466	1129.51477	2.0474	0.0011584	7.9188	0.0044802	9.9662	0.0056385	565.7664762100097	18.41	0.26408	18.396	18.3	18.564	-0.013948	1230	103	0.8799654	0.062543035	0.878446	356.7602	0	25.356537						622	12	5	NaN	NaN	NaN	0.47601	1	13614	13614		20.449	3.8645	1	101460	+		3817	10244	2261	2296	2990	2990					-0.04480986608587045
EMKSMFGTLS	10	Unmodified						0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.76466	1129.51477	2.5996	0.0014708	4.8223	0.0027283	7.422	0.0041991	565.7667232442515	18.364	0.21594	18.364	18.292	18.508	0	1233	103	0.87812483	0.06254977	0.87812483	356.014		25.359253	-0.015613	-0.001235	-0.00016058	NaN	20.449	430	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76847	+		3818	10244	2261	2296							-0.04480986608587045
EMKSMFGTLS	10	Unmodified						0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.76466	1129.51477	2.0474	0.0011584	7.9188	0.0044802	9.9662	0.0056385	565.7664762100097	18.41	0.26408	18.396	18.3	18.564	-0.013948	1230	103	0.8799654	0.062543035	0.878446	356.7602		25.356537	0.015613	0.0022687	0.00016058	NaN	20.449	622	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101460	+		3819	10244	2261	2296							-0.04480986608587045
EMKYLELMIVN	11	Unmodified	_EMKYLELMIVN_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85654894245	2	691.856549	1381.69854	1.4908	0.0010314	-8.3253	-0.0057599	-6.8345	-0.0047285	692.3521498111512	26.77	0.048262	26.759	26.759	26.808	-0.010645	1065	46	0.9808926	0.027451396	0.97937316	396.80225	0	11.10495						57	3	2	NaN	NaN	NaN	0.71564	1	18977	18977		6.4299	0.28932	1	4356.3			3820	1980	2262	2297	2991	2991					0.02296362102219973
EMLDAATIFP	10	Unmodified	_EMLDAATIFP_					0	0	0			REV__CON__Q2YDI2	REV__CON__Q2YDI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2731750663	2	554.273175	1106.5318	0.55413	0.00030714	-3.3387	-0.0018506	-2.7846	-0.0015434	554.7715528029311	33.648	0.1207	33.648	33.624	33.745	0	1248	58	0.8689189	0.034993947	0.8689189	352.36993	0	14.1910095						73	6	2	NaN	NaN	NaN	0.66268	1	13124	13124		10.605	2.3147	1	4483	+	+	3821	8277	2263	2298	2992	2992					-0.017207427311632273
EMLDAATIFP	10	Unmodified						0	0	0			REV__CON__Q2YDI2	REV__CON__Q2YDI2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.273175	1106.5318	0.55413	0.00030714	-3.3387	-0.0018506	-2.7846	-0.0015434	554.7715528029311	33.648	0.1207	33.648	33.624	33.745	0	1248	58	0.8689189	0.034993947	0.8689189	352.36993		14.1910095	0	0	0	NaN	10.605	73	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4483	+	+	3822	8277	2263	2298							-0.017207427311632273
EMLMWTEQK	9	Unmodified	_EMLMWTEQK_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2779344807	2	598.277934	1194.54132	0.89299	0.00053426	-5.8961	-0.0035275	-5.0031	-0.0029933	598.2742877256418	31.646	0.26549	31.646	31.597	31.863	0	1176	85	0.9130621	0.051461518	0.9130621	369.93542	0	20.850098						548	12	6	NaN	NaN	NaN	0.36492	1	16285	16285		15.175	1.7123	1	125270	+		3823	8762	2264	2299	2993	2993					-0.0481729771731807
EMLQKEQDTF	10	Unmodified	_EMLQKEQDTF_					0	0	0			REV__ENST00000526265.5_1_11:82984683-82985032:-|nuORF	REV__ENST00000526265.5_1_11:82984683-82985032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.79500293065	2	634.795003	1267.57545	1.344	0.00085316	0.12428	7.889E-05	1.4683	0.00093205	634.7934748690593	28.194	0.12067	28.185	28.137	28.257	-0.0089779	1146	70	0.93142134	0.04219669	0.9299019	377.12543	0	17.085144						108	6	2	NaN	NaN	NaN	0.68732	1	17364	17364		8.9191	0.67428	1	9689.5	+		3824	9684	2265	2300	2994	2994					-0.0476317802470021
EMSKEWFLF	9	Unmodified	_EMSKEWFLF_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.7889923060001	2	608.788992	1215.56343	0.39804	0.00024233	-3.0446	-0.0018535	-2.6466	-0.0016112	608.7877990346562	31.259	0.2172	31.259	31.187	31.404	0	1116	82	0.94976085	0.04952991	0.94976085	384.7282	0	20.063538						300	10	4	NaN	NaN	NaN	0.12866	1	16866	16866		31.675	8.341	1	32172			3825	4713	2266	2301	2995	2995					-0.035727499772292504
EMSKEWFLF	9	Unmodified						0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	608.788992	1215.56343	0.4873	0.00029666	-2.5272	-0.0015386	-2.0399	-0.0012419	609.2880322813721	31.258	0.19306	31.253	31.205	31.398	-0.0050716	1116	85	0.94976085	0.05136162	0.9482414	384.7282		20.805511	-0.0030465	0.00036617	-0.00075972	NaN	31.675	252	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27437			3826	4713	2266	2301							-0.035727499772292504
EMTRAEMTEDG	11	Unmodified	_EMTRAEMTEDG_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.8410437022667	3	423.841044	1268.5013	2.5584	0.0010844	4.9263	0.002088	7.4847	0.0031723	423.8440066527641	18.412	0.071941	18.412	18.388	18.46	0	1485	25	0.72280174	0.014858484	0.72280174	438.97815	0	9.024017						25	4	2	NaN	NaN	NaN	0.77378	1	18191	18191		0.38034	0	1	1580.2	+		3827	8720	2267	2302	2996	2996					-0.12220889178524885
EMVFPPKTMK	10	Unmodified	_EMVFPPKTMK_					0	0	0			REV__ENSG00000091436|ENST00000375213|MAP3K20	REV__ENSG00000091436|ENST00000375213|MAP3K20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.21197214686663	3	403.211972	1206.61409	1.5348	0.00061884	-1.0365	-0.00041794	0.49825	0.0002009	403.2119231848748	11.908	0.07209	11.908	11.884	11.956	0	1545	37	0.68561107	0.022336245	0.68561107	416.62076	0	13.5729065						43	4	2	NaN	NaN	NaN	0.68669	1	16651	16651		7.1304	3.2217	1	2741.6	+		3828	8736	2268	2303	2997	2997					0.019044560761130924
ENAALVRER	9	Unmodified	_ENAALVRER_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2910793937501	2	529.291079	1056.56761	1.5539	0.00082248	-2.2191	-0.0011746	-0.66523	-0.0003521	529.2898857482222	12.196	0.12007	12.196	12.124	12.244	0	1254	31	0.8652351	0.018418849	0.8652351	351.08008	0	7.473694						73	6	2	NaN	NaN	NaN	0.31471	1	10949	10949		17.97	1.3855	1	4626.1			3829	2836	2269	2304	2998	2998					0.041584755607118495
ENAALVRER	9	Unmodified	_ENAALVRER_					0	0	0		nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	nc|ENSG00000133816|O94851-2|MICAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2910793937501	2	529.291079	1056.56761	1.1581	0.00061295	-0.61763	-0.0003269	0.54043	0.00028605	529.290336016901	12.198	0.095962	12.189	12.141	12.237	-0.0088415	1251	34	0.8670771	0.020261824	0.8655577	351.82748	0	8.221497						73	5	2	NaN	NaN	NaN	0.057383	1	10723	10723		43.776	16.479	1	5866			3830	2836	2269	2304	2999	2999					0.041584755607118495
ENAGVDPTL	9	Unmodified	_ENAGVDPTL_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.4418024624	1	915.441802	914.434526	2.6373	0.0024143	-3.0086	-0.0027542	-0.37136	-0.00033996	915.4386302554789	20.261	0.048079	20.246	20.222	20.271	-0.014141	420	28	1.3697531	0.016088843	1.3682337	278.45688	0	3.2707214						40	3	2	NaN	NaN	NaN	0.44082	1	6188	6188		12.049	1.4437	1	2504.4			3831	730	2270	2305	3000	3000					-0.026113886158100286
ENDDASTEFY	10	Unmodified	_ENDDASTEFY_					0	0	0			REV__nc|ENSG00000084234|Q06481-5|APLP2	REV__nc|ENSG00000084234|Q06481-5|APLP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.7278402247001	2	595.72784	1189.44113	1.3996	0.00083376	0.84096	0.00050098	2.2405	0.0013347	595.7285089602932	23.803	0.16863	23.803	23.73	23.899	0	1221	55	0.885486	0.03311813	0.885486	358.78024	0	13.418762						291	8	5	NaN	NaN	NaN	0.27719	1	16132	16132		28.896	10.926	1	38391	+		3832	8681	2271	2306	3001	3001					-0.14601540245735123
ENDDASTEFY	10	Unmodified						0	0	0			REV__nc|ENSG00000084234|Q06481-5|APLP2	REV__nc|ENSG00000084234|Q06481-5|APLP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.72784	1189.44113	1.3996	0.00083376	0.84096	0.00050098	2.2405	0.0013347	595.7285089602932	23.803	0.16863	23.803	23.73	23.899	0	1221	55	0.885486	0.03311813	0.885486	358.78024		13.418762	0.0066779	0.00038259	0.00075972	NaN	28.896	291	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38391	+		3833	8681	2271	2306							-0.14601540245735123
ENDIEEEIYD	10	Unmodified	_ENDIEEEIYD_					0	0	0		tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	tr|U7T203|U7T203_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00417PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.7618800073001	2	634.76188	1267.50921	1.0454	0.00066355	-2.0455	-0.0012984	-1.0001	-0.00063484	635.2617963852056	33.914	0.2655	33.914	33.842	34.107	0	1140	97	0.93509084	0.058743358	0.93509084	378.6114	0	23.78476						470	12	6	NaN	NaN	NaN	0.65442	1	18168	18168		11.17	2.2084	1	67041			3834	13949	2272	2307	3002	3002					-0.11384715385747768
ENEDQVQVQV	10	Unmodified	_ENEDQVQVQV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.28057428695	2	594.280574	1186.5466	1.672	0.00099366	-4.5192	-0.0026856	-2.8471	-0.001692	594.779292464104	17.018	0.095984	17.005	16.981	17.077	-0.013294	1179	52	0.9112251	0.031235993	0.90970564	369.2195	0	12.656525						75	5	2	NaN	NaN	NaN	0.76892	1	15438	15438		3.2116	0	1	5247.1	+		3835	10428	2273	2308	3003	3003					-0.039215793294715695
ENEDQVQVQV	10	Unmodified						0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	594.280574	1186.5466	1.5329	0.00091095	-8.2015	-0.004874	-6.6686	-0.003963	594.2753543023402	16.997	0.096003	16.997	16.973	17.069	0	1179	46	0.9112251	0.027564168	0.9112251	369.21954		11.168732	-0.0036703	-0.0019811	0.00075972	NaN	3.2116	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5191.9	+		3836	10428	2273	2308							-0.039215793294715695
ENEDQVQVQV	10	Unmodified						0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.280574	1186.5466	1.672	0.00099366	-4.5192	-0.0026856	-2.8471	-0.001692	594.779292464104	17.018	0.095984	17.005	16.981	17.077	-0.013294	1179	52	0.9112251	0.031235993	0.90970564	369.2195		12.656525	0.0036703	0.0023956	-0.00075972	NaN	3.2116	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5247.1	+		3837	10428	2273	2308							-0.039215793294715695
ENEEGKPKK	9	Unmodified	_ENEEGKPKK_					0	0	0		ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	353.52073915020003	3	353.520739	1057.54039	1.6259	0.0005748	4.7918	0.001694	6.4178	0.0022688	353.52290249350756	31.403	0.048256	31.398	31.398	31.446	-0.0050716	1554	31	0.68002546	0.018621624	0.678506	413.8834	0	11.333679						58	3	3	NaN	NaN	NaN	0.66196	1	10764	10764		1.1768	0.66078	1	4252.8			3838	3651	2274	2309	3004	3004					0.013919472296720414
ENEEKVCLEY	10	Unmodified	_ENEEKVCLEY_					0	0	0		nc|ENSG00000100865|Q9BW66-2|CINP;ENST00000561468.5_1_14:102816372-102829233:-|nuORF;ENST00000558523.1_1_14:102821996-102829188:-|nuORF;ENSG00000100865|ENST00000216756|CINP;nc|ENSG00000100865|Q9BW66-3|CINP	nc|ENSG00000100865|Q9BW66-2|CINP	nc|ENSG00000100865|Q9BW66-2|CINP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.2791856909502	2	628.279186	1254.54382	1.3501	0.00084825	2.4708	0.0015523	3.8209	0.0024006	628.2818688042513	23.007	0.1446	22.993	22.921	23.065	-0.01354	1158	67	0.92408	0.040372968	0.9225606	374.19485	0	16.348541						195	7	5	NaN	NaN	NaN	0.64611	1	17120	17120		11.739	0	1	17751			3839	1280	2275	2310	3005	3005					-0.07327170778626169
ENEPFAGV	8	Unmodified	_ENEPFAGV_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	862.3941239883001	1	862.394124	861.386848	2.9515	0.0025453	-0.40337	-0.00034787	2.5481	0.0021975	862.3944337190999	26.07	0.33789	26.07	25.998	26.336	0	465	229	1.3429124	0.13633406	1.3429124	273.24963	0	27.740631						1274	15	5	NaN	NaN	NaN	0.20037	1	5547	5547		49.961	11.83	1	905720			3840	4920	2276	2311	3006	3006					-0.04939042815999528
ENEPFAGV	8	Unmodified						0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	862.394124	861.386848	2.7543	0.0023753	0.1372	0.00011832	2.8915	0.0024936	862.3947369974035	26.07	0.3137	26.059	26.011	26.324	-0.011137	465	199	1.3429124	0.11835742	1.341393	273.24963		24.082825	-0.005674	0.0002282	-0.00075972	NaN	49.961	1227	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910170			3841	4920	2276	2311							-0.04939042815999528
ENEPLNKAI	9	Unmodified	_ENEPLNKAI_					0	0	0			REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.5418508579999	1	1027.54185	1026.53457	1.9207	0.0019736	-11.637	-0.011957	-9.7163	-0.0099839	1027.5318514034905	25.443	0.096512	25.431	25.407	25.503	-0.012011	168	55	1.5192716	0.031900406	1.5177522	308.35187	0	6.474518						140	5	3	NaN	NaN	NaN	0.2345	1	9438	9438		23.118	2.6043	1	14337	+		3842	10184	2277	2312	3007	3007					0.022368487179846852
ENFGNVRNTD	10	Unmodified	_ENFGNVRNTD_					0	0	0		tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2652585737501	2	583.265259	1164.51596	1.146	0.00066842	-10.494	-0.006121	-9.3484	-0.0054526	583.2586154249217	30.1	0.16895	30.094	30.045	30.214	-0.0064106	1194	73	0.902037	0.04413849	0.9005176	365.5761	0	17.888367						244	8	4	NaN	NaN	NaN	0.47445	1	14761	14761		20.513	7.5105	1	21818			3843	13880	2278	2313	3008	3008					-0.05971312923838923
ENIQQMSNFDI	11	Unmodified	_ENIQQMSNFDI_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8033592790001	2	669.803359	1337.59217	1.2707	0.00085113	1.8655	0.0012495	3.1362	0.0021006	669.8040669163693	26.553	0.19303	26.542	26.494	26.687	-0.010645	1098	76	0.960755	0.04580176	0.9592356	388.78287	0	18.534302						352	9	4	NaN	NaN	NaN	0.57257	1	18498	18498		15.822	0	1	57846	+		3844	10078	2279	2314	3009	3009					-0.0631267713872603
ENLGDLTI	8	Unmodified	_ENLGDLTI_					0	0	0			REV__ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant	REV__ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4516388672001	1	874.451639	873.444362	1.4562	0.0012734	1.0537	0.0009214	2.5099	0.0021948	874.4526645576888	24.743	0.072361	24.731	24.731	24.803	-0.012394	402	40	1.3804773	0.023232102	1.3789579	280.83224	0	4.7261353						69	4	2	NaN	NaN	NaN	0.528	1	5579	5579		29.598	2.8668	1	4333.7	+		3845	8129	2280	2315	3010	3010					0.0025779938957839477
ENLPPGGV	8	Unmodified	_ENLPPGGV_					0	0	0		ENST00000425630.1_1_10:1208517-1208553:+|nuORF	ENST00000425630.1_1_10:1208517-1208553:+|nuORF	ENST00000425630.1_1_10:1208517-1208553:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4042947441002	1	782.404295	781.397018	1.0304	0.0008062	6.7891	0.0053119	7.8195	0.006118	782.4094508095088	33.287	0.1448	33.287	33.238	33.383	0	543	55	1.296287	0.032327414	1.296287	264.1863	0	6.5884094						155	7	3	NaN	NaN	NaN	0.77489	1	4509	4509		12.588	0	1	14644			3846	6941	2281	2316	3011	3011					-0.0024243509075176917
ENMVIETER	9	Unmodified	_ENMVIETER_					0	0	0		tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7687881801501	2	560.768788	1119.52302	1.2225	0.00068553	8.5015	0.0047674	9.724	0.0054529	560.7731303509131	37.022	0.096119	37.024	36.976	37.072	0.0022507	1209	34	0.892844	0.020231187	0.8913246	362.02045	0	8.203125						100	5	3	NaN	NaN	NaN	0.49999	1	13246	13246		9.6116	0.48844	1	8299.7			3847	13952	2282	2317	3012	3012					-0.03195716367645218
ENNDRSGEQI	10	Unmodified	_ENNDRSGEQI_					0	0	0			REV__ENSG00000145860|ENST00000424310|RNF145	REV__ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2601731958501	2	581.260173	1160.50579	2.2141	0.001287	-5.1165	-0.002974	-2.9024	-0.0016871	581.2579792587283	23.199	0.19303	23.186	23.114	23.307	-0.013294	1215	82	0.8891654	0.049679935	0.88764596	360.37405	0	20.13501						573	9	6	NaN	NaN	NaN	0.5358	1	14639	14639		17.97	1.3855	1	249510	+		3848	9935	2283	2318	3013	3013					-0.06803920649076645
ENRALLPWW	9	Unmodified	_ENRALLPWW_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-5|OTOF	REV__nc|ENSG00000115155|Q9HC10-5|OTOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.54521905506664	3	395.545219	1183.61383	1.5494	0.00061285	2.9963	0.0011852	4.5456	0.001798	395.54635100118446	22.718	0.072376	22.718	22.67	22.742	0	1368	28	0.7950918	0.016647995	0.7950918	483.25415	0	10.118591						44	4	2	NaN	NaN	NaN	0.41766	1	15971	15971		8.2775	0	1	4664.4	+		3849	9179	2284	2319	3014	3014					0.029365404627924363
ENRCYIAL	8	Unmodified	_ENRCYIAL_					0	0	0			REV__ENSG00000169136|ENST00000423777|ATF5	REV__ENSG00000169136|ENST00000423777|ATF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.4822274891	1	981.482227	980.474951	1.0928	0.0010726	6.7872	0.0066615	7.88	0.0077341	981.4894427146812	32.055	0.12068	32.051	32.027	32.148	-0.0037613	285	73	1.4500183	0.042683005	1.4484988	294.47934	0	8.6683655						137	6	2	NaN	NaN	NaN	0.63138	1	7728	7728		23.334	2.779	1	14370	+		3850	10538	2285	2320	3015	3015					-0.016067454970425388
ENSFLRPEI	9	Unmodified	_ENSFLRPEI_					0	0	0		nc|ENSG00000167077|Q5TIA1-7|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	nc|ENSG00000167077|Q5TIA1-7|MEI1	nc|ENSG00000167077|Q5TIA1-7|MEI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7878382130501	2	552.787838	1103.56112	1.264	0.00069872	2.8101	0.0015534	4.0741	0.0022521	552.7889776071796	24.381	0.096519	24.368	24.344	24.441	-0.012749	1239	40	0.87444305	0.023932874	0.8729236	354.62183	0	9.7057495						103	5	2	NaN	NaN	NaN	0.35794	1	12649	12649		15.463	0.28729	1	22671			3851	4522	2286	2321	3016	3016					0.013485376093512969
ENTELSQKN	9	Unmodified	_ENTELSQKN_					0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7567350499	2	531.756735	1061.49892	1.5235	0.00081012	-5.2758	-0.0028055	-3.7524	-0.0019953	531.754613208558	20.477	0.096134	20.477	20.429	20.525	0	1266	52	0.85786515	0.031327307	0.85786515	348.06885	0	12.710693						122	5	2	NaN	NaN	NaN	0.14787	1	11170	11170		28.896	0	1	21611			3852	1253	2287	2322	3017	3017					-0.02937233529655714
ENTELSQKN	9	Unmodified						0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.756735	1061.49892	0.79388	0.00042215	-2.5879	-0.0013762	-1.7941	-0.00095401	531.7562582702309	20.453	0.096195	20.439	20.439	20.535	-0.014143	1269	49	0.8560222	0.02948296	0.85450274	347.32108		11.962341	-0.019003	0.0014342	-0.0016812	NaN	28.896	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18511			3853	1253	2287	2322							-0.02937233529655714
ENTPLVPSG	9	Unmodified	_ENTPLVPSG_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.4625379045002	1	913.462538	912.455261	1.9851	0.0018134	-3.116	-0.0028463	-1.1308	-0.001033	913.4596086652109	17.213	0.095993	17.213	17.165	17.261	0	375	46	1.3965509	0.026777864	1.3965509	283.91373	0	5.443817						103	5	2	NaN	NaN	NaN	0.3389	1	6274	6274		16.417	2.6796	1	8753.3			3854	5886	2288	2323	3018	3018					-0.004467982361234135
ENTPLVPSG	9	Unmodified	_ENTPLVPSG_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.4625379045002	1	913.462538	912.455261	2.0963	0.0019149	-0.90596	-0.00082756	1.1903	0.0010873	913.4614851021288	17.213	0.095993	17.213	17.165	17.261	0	435	37	1.360811	0.021466732	1.360811	276.64795	0	4.364105						67	5	2	NaN	NaN	NaN	0.29681	1	6277	6277		19.118	5.3813	1	3964.1			3855	5886	2288	2323	3019	3019					-0.004467982361234135
ENTPLVPSG	9	Unmodified						0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	913.462538	912.455261	2.3335	0.0021316	-1.2503	-0.0011421	1.0832	0.00098944	913.4619754256125	17.21	0.11985	17.196	17.149	17.268	-0.013567	438	40	1.359022	0.023254395	1.3575026	276.28424		4.727539	-0.0085223	-0.00010747	-0.0016542	NaN	19.118	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5134.4			3856	5886	2288	2323							-0.004467982361234135
ENVAIAMA	8	Unmodified	_ENVAIAMA_					0	0	0		ENSG00000284373|ENST00000639081|TAF11L2;ENSG00000249662|ENST00000638486|LINC02218	ENSG00000284373|ENST00000639081|TAF11L2	ENSG00000284373|ENST00000639081|TAF11L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4076655624999	1	818.407666	817.400389	1.7923	0.0014668	-4.3618	-0.0035697	-2.5695	-0.0021029	818.4033138279209	27.084	0.048292	27.084	27.06	27.109	0	501	46	1.3214091	0.026895046	1.3214091	269.10147	0	5.477112						61	3	2	NaN	NaN	NaN	0.80191	1	4983	4983		8.962	0.67169	1	4835.6			3857	6101	2289	2324	3020	3020					-0.015615083084185244
ENVARVAAAA	10	Unmodified	_ENVARVAAAA_					0	0	0			REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.26707298119993	2	486.267073	970.519593	1.9385	0.00094263	-8.0219	-0.0039008	-6.0833	-0.0029581	486.26348322109845	17.093	0.048023	17.093	17.069	17.117	0	1356	64	0.8024889	0.03882426	0.8024889	325.9912	0	15.771393						81	3	2	NaN	NaN	NaN	0.65442	1	7622	7622		11.17	1.4243	1	13001	+		3858	11800	2290	2325	3021	3021					0.03315401640645632
ENWVWAEDMVF	11	Unmodified	_ENWVWAEDMVF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.3108201703499	2	713.31082	1424.60709	1.4285	0.001019	1.6919	0.0012069	3.1204	0.0022258	713.3123021808273	22.453	0.19273	22.453	22.429	22.621	0	1029	85	1.0028336	0.05119574	1.0028336	405.55698	0	20.704132						417	9	5	NaN	NaN	NaN	0.57257	1	20247	20247		15.822	1.3969	1	50003			3859	2710	2291	2326	3022	3022					-0.08823185270784961
ENYLFQGRQ	9	Unmodified	_ENYLFQGRQ_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.78308718615	2	577.783087	1153.55162	1.7893	0.0010338	0.27862	0.00016098	2.0679	0.0011948	577.7832832191237	23.368	0.2654	23.355	23.283	23.548	-0.013294	1215	85	0.8891654	0.051478148	0.88764596	360.39957	0	20.865295						241	12	2	NaN	NaN	NaN	0.31737	1	14426	14426		17.799	3.7574	1	43207			3860	6018	2292	2327	3023	3023					-0.019012306761851505
EPAAADGD	8	Unmodified	_EPAAADGD_					0	0	0			REV__ENSG00000141579|ENST00000269394|ZNF750	REV__ENSG00000141579|ENST00000269394|ZNF750	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.15358285934997	2	373.153583	744.292613	0.97917	0.00036538	-3.34	-0.0012463	-2.3608	-0.00088096	373.1535049218068	31.815	0.12066	31.815	31.766	31.887	0	1437	34	0.7524962	0.020396113	0.7524962	306.97733	0	8.320496						97	6	3	NaN	NaN	NaN	0.8439	1	3970	3970		3.1533	0	1	8043.8	+		3861	9831	2293	2328	3024	3024					-0.08976181638138314
EPAAANPAG	9	Unmodified	_EPAAANPAG_					0	0	0		nc|ENSG00000168071|A6NC98-3|CCDC88B;ENST00000494566.5_1_11:64110218-64117194:+|nuORF	nc|ENSG00000168071|A6NC98-3|CCDC88B	nc|ENSG00000168071|A6NC98-3|CCDC88B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19304237085	2	399.193042	796.371532	1.2687	0.00050644	3.7791	0.0015086	5.0478	0.002015	399.19466195987525	15.63	0.09607	15.63	15.582	15.678	0	1464	40	0.73579943	0.02412808	0.73579943	299.81152	0	9.831299						81	5	2	NaN	NaN	NaN	0.58159	1	4701	4701		6.2502	0.15988	1	9753.9			3862	7281	2294	2329	3025	3025					-0.03479909613190557
EPADDSSFSL	10	Unmodified	_EPADDSSFSL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4527610792	1	1067.45276	1066.44548	1.7061	0.0018211	-0.59674	-0.000637	1.1093	0.0011841	1067.4515671556817	24.213	0.31376	24.213	24.116	24.43	0	231	76	1.4820169	0.044388413	1.4820169	300.64136	0	9.004639						474	14	3	NaN	NaN	NaN	0.040041	1	11385	11385		55.413	22.96	1	67773			3863	5359	2295	2330	3026	3026					-0.08508031032170038
EPADDSSFSL	10	Unmodified	_EPADDSSFSL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.4527610792	1	1067.45276	1066.44548	1.2836	0.0013702	-0.32073	-0.00034237	0.96288	0.0010278	1067.4523632855692	24.212	0.28958	24.199	24.127	24.417	-0.012749	231	100	1.4820169	0.05856788	1.4804975	300.64136	0	11.881073						454	13	3	NaN	NaN	NaN	0.01359	1	11123	11123		66.656	34.204	1	66458			3864	5359	2295	2330	3027	3027					-0.08508031032170038
EPAFEDITL	9	Unmodified	_EPAFEDITL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5040683681998	1	1034.50407	1033.49679	1.2869	0.0013314	4.6304	0.0047902	5.9174	0.0061216	1035.5133589247573	29.473	0.24126	29.466	29.393	29.635	-0.0070667	195	103	1.5033154	0.060307503	1.501796	305.0861	0	12.238922						509	11	4	NaN	NaN	NaN	0.036546	1	9711	9711		52.624	13.706	1	130750			3865	5632	2296	2331	3028	3028					-0.018616622674926475
EPAGQTSA	8	Unmodified	_EPAGQTSA_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.3471737957	1	760.347174	759.339897	3.2838	0.0024968	3.8838	0.002953	7.1676	0.0054499	760.3495175440211	25.805	0.072414	25.793	25.745	25.817	-0.0116	540	37	1.2980826	0.021551609	1.2965631	264.6849	0	4.39447						45	4	2	NaN	NaN	NaN	0.80692	1	4130	4130		8.2903	0.74991	1	2392.8	+		3866	11119	2297	2332	3029	3029					-0.04939902367141258
EPAGTDPGL	9	Unmodified	_EPAGTDPGL_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4046886746002	1	856.404689	855.397412	2.2147	0.0018967	-1.5559	-0.0013325	0.65874	0.00056415	856.4036093226282	17.837	0.14384	17.837	17.741	17.885	0	498	52	1.3232021	0.030477881	1.3232021	269.26868	0	6.2021484						157	7	2	NaN	NaN	NaN	0.0072287	1	5468	5468		98.041	17.402	1	16423			3867	3695	2298	2333	3030	3030					-0.03607060161550635
EPAGTDPGL	9	Unmodified	_EPAGTDPGL_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4046886746002	1	856.404689	855.397412	1.699	0.0014551	1.1824	0.0010126	2.8814	0.0024677	856.4057792601739	17.834	0.21582	17.82	17.748	17.964	-0.013786	492	52	1.3267875	0.030474544	1.325268	269.9983	0	6.2015076						232	10	3	NaN	NaN	NaN	0.028349	1	5331	5331		61.271	14.135	1	21258			3868	3695	2298	2333	3031	3031					-0.03607060161550635
EPAPGTNQR	9	Unmodified	_EPAPGTNQR_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.24105519594997	2	485.241055	968.467557	2.852	0.0013839	-1.1321	-0.00054936	1.7199	0.00083455	485.23989031210425	11.116	0.047897	11.116	11.068	11.116	0	1326	28	0.8209676	0.016622722	0.8209676	333.50757	0	6.752777						45	3	2	NaN	NaN	NaN	0.40649	1	7561	7561		13.463	6.4787	1	3033.1			3869	1823	2299	2334	3032	3032					-0.01793761773103597
EPAPHEGG	8	Unmodified	_EPAPHEGG_					0	0	0			REV__chr6:149823975-149826264|169|10.37|0.0|19.98|-|2|None,LRP11|1	REV__chr6:149823975-149826264|169|10.37|0.0|19.98|-|2|None,LRP11|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.17739230665006	2	397.177392	792.340232	1.5452	0.00061373	4.5097	0.0017912	6.0549	0.0024049	397.1795691862041	28.363	0.26548	28.363	28.339	28.605	0	1461	49	0.7376554	0.029694438	0.7376554	300.59363	0	12.100464						319	12	5	NaN	NaN	NaN	0.84455	1	4652	4652		2.7852	0	1	98083	+		3870	8233	2300	2335	3033	3033					-0.0642448264726454
EPAQWVTQQ	9	Unmodified	_EPAQWVTQQ_					0	0	0		ENST00000415732.1_3_10:127569532-127584855:-|nuORF	ENST00000415732.1_3_10:127569532-127584855:-|nuORF	ENST00000415732.1_3_10:127569532-127584855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.5214497668999	1	1086.52145	1085.51417	2.1965	0.0023865	-4.2777	-0.0046478	-2.0812	-0.0022613	1086.5164383063734	26.094	0.16896	26.094	26.022	26.191	0	81	46	1.5705823	0.026503444	1.5705823	318.5362	0	5.3752747						124	8	2	NaN	NaN	NaN	0.67082	1	12194	12194		1.7022	0.26263	1	9958.2			3871	6881	2301	2336	3034	3034					-0.025163219418118388
EPAQWVTQQ	9	Unmodified						0	0	0		ENST00000415732.1_3_10:127569532-127584855:-|nuORF	ENST00000415732.1_3_10:127569532-127584855:-|nuORF	ENST00000415732.1_3_10:127569532-127584855:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1086.52145	1085.51417	2.0577	0.0022357	-3.973	-0.0043168	-1.9154	-0.0020811	1086.5165919804892	26.094	0.14483	26.083	26.011	26.156	-0.011137	81	40	1.5705823	0.02296722	1.5690628	318.5362		4.658081	-0.0056668	0.00018934	-0.00075972	NaN	1.7022	134	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8764.5			3872	6881	2301	2336							-0.025163219418118388
EPAVYEPSL	9	Unmodified	_EPAVYEPSL_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.75039007425	2	502.75039	1003.48623	1.4994	0.0007538	-3.0678	-0.0015423	-1.5684	-0.00078854	502.74862947497815	24.019	0.096443	24.019	23.995	24.092	0	1341	43	0.8117308	0.025867462	0.8117308	329.5941	0	10.503174						82	5	2	NaN	NaN	NaN	0.16171	1	8717	8717		27.789	7.3402	1	7598.2			3873	1661	2302	2337	3035	3035					-0.015376449219047572
EPAVYEPSL	9	Unmodified	_EPAVYEPSL_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.75039007425	2	502.75039	1003.48623	1.6473	0.00082818	-2.2129	-0.0011125	-0.56556	-0.00028433	502.7491339875955	24.043	0.096491	24.031	23.982	24.079	-0.012749	1338	40	0.81357855	0.024018466	0.8120591	330.34436	0	9.752441						73	5	2	NaN	NaN	NaN	0.29681	1	8542	8542		19.118	5.0767	1	5637			3874	1661	2302	2337	3036	3036					-0.015376449219047572
EPCLHPSS	8	Unmodified	_EPCLHPSS_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	869.3821790935001	1	869.382179	868.374903	1.2738	0.0011074	3.2486	0.0028243	4.5224	0.0039317	869.3856014391953	35.82	0.072308	35.82	35.795	35.868	0	390	73	1.3876231	0.042878747	1.3876231	282.31143	0	8.723633						87	4	2	NaN	NaN	NaN	0.72043	1	5639	5639		17.78	0	1	5400.8	+		3875	11300	2303	2338	3037	3037					-0.06454982830825884
EPDAINVLI	9	Unmodified	_EPDAINVLI_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5407882255003	1	983.540788	982.533512	1.7338	0.0017053	-0.21612	-0.00021256	1.5177	0.0014927	983.5396044275167	27.495	0.072397	27.495	27.471	27.543	0	270	58	1.458913	0.03378904	1.458913	296.27713	0	6.8618774						136	4	2	NaN	NaN	NaN	0.13602	1	7972	7972		30.61	1.7145	1	19282			3876	6174	2304	2339	3038	3038					0.04154634349117714
EPDAINVLI	9	Unmodified						0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.540788	982.533512	1.4079	0.0013847	0.94507	0.00092952	2.3529	0.0023142	983.5413922750303	27.518	0.12067	27.508	27.46	27.581	-0.009552	267	58	1.4606913	0.033785462	1.4591719	296.63828		6.8611755	0.0068899	0.00073159	0.00012946	NaN	30.61	146	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18487			3877	6174	2304	2339							0.04154634349117714
EPDAVHVVL	9	Unmodified	_EPDAVHVVL_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.76637448945	2	489.766374	977.518196	0.91124	0.0004463	-9.5436	-0.0046741	-8.6323	-0.0042278	489.76073159870623	22.259	0.14463	22.246	22.197	22.342	-0.013731	1329	55	0.81912065	0.033247292	0.8176012	332.71417	0	13.504547						129	7	2	NaN	NaN	NaN	0.27442	1	7659	7659		20.555	2.7751	1	19326			3878	5068	2305	2340	3039	3039					0.028537675519032746
EPDGIPFIL	9	Unmodified	_EPDGIPFIL_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5349745661	1	1000.53497	999.527698	0.86401	0.00086448	-0.38962	-0.00038983	0.47439	0.00047464	1000.534923074862	35.217	0.16895	35.217	35.12	35.289	0	288	43	1.4482387	0.02490902	1.4482387	294.04025	0	5.0573425						145	8	2	NaN	NaN	NaN	0.17818	1	8573	8573		26.732	7.4468	1	9202			3879	3123	2306	2341	3040	3040					0.02791535837422998
EPDPADLAL	9	Unmodified	_EPDPADLAL_					0	0	0		ENST00000594723.1_1_19:49136676-49136928:-|nuORF;nc|ENSG00000108924|Q16534-2|HLF;ENST00000570962.1_1_17:53345105-53398237:+|nuORF;ENSG00000108924|ENST00000226067|HLF;ENSG00000105516|ENST00000222122|DBP	ENST00000594723.1_1_19:49136676-49136928:-|nuORF	ENST00000594723.1_1_19:49136676-49136928:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4622035535	1	940.462204	939.454927	1.8423	0.0017326	-0.4361	-0.00041013	1.4062	0.0013225	940.4618865776191	26.312	0.16895	26.312	26.263	26.432	0	342	70	1.4161754	0.041024446	1.4161754	287.78033	0	8.336548						202	8	2	NaN	NaN	NaN	0.14301	1	6804	6804		29.598	9.0429	1	19356			3880	1545	2307	2342	3041	3041					-0.017222179560008044
EPDPADLAL	9	Unmodified	_EPDPADLAL_					0	0	0		ENST00000594723.1_1_19:49136676-49136928:-|nuORF;nc|ENSG00000108924|Q16534-2|HLF;ENST00000570962.1_1_17:53345105-53398237:+|nuORF;ENSG00000108924|ENST00000226067|HLF;ENSG00000105516|ENST00000222122|DBP	ENST00000594723.1_1_19:49136676-49136928:-|nuORF	ENST00000594723.1_1_19:49136676-49136928:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4622035535	1	940.462204	939.454927	1.9898	0.0018713	1.8549	0.0017445	3.8447	0.0036158	940.4652280321394	26.311	0.19302	26.3	26.252	26.445	-0.011135	339	61	1.4179583	0.035660148	1.4164388	288.1426	0	7.24646						189	9	2	NaN	NaN	NaN	0.16171	1	6667	6667		27.789	5.9538	1	19559			3881	1545	2307	2342	3042	3042					-0.017222179560008044
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7536610447	2	571.753661	1141.49277	1.5869	0.0009073	-1.296	-0.00074099	0.29087	0.0001663	571.7527819916436	26.94	0.33831	26.94	26.746	27.084	0	1254	94	0.8652351	0.05707693	0.8652351	350.7438	0	23.137482						550	15	3	NaN	NaN	NaN	0.10363	1	14500	14500		35.296	17.498	1	105210			3882	4859	2308	2343	3043	3043					-0.07231751761173655
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5000456228	1	1142.50005	1141.49277	2.3816	0.002721	-0.77305	-0.00088321	1.6085	0.0018378	1142.499398451639	26.964	0.33784	26.964	26.843	27.181	0	123	67	1.5458313	0.03891909	1.5458313	313.3232	0	7.888489						406	15	2	NaN	NaN	NaN	0.0050453	1	14503	14503		102.5	73.6	1	59759			3883	4859	2308	2343	3044	3044					-0.07231751761173655
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7536610447	2	571.753661	1141.49277	1.0217	0.00058418	-0.31721	-0.00018137	0.70451	0.00040281	571.7531481010708	26.963	0.33791	26.952	26.783	27.121	-0.010645	1254	88	0.8652351	0.05340606	0.86371565	350.7438	0	21.649445						607	15	4	NaN	NaN	NaN	0.019103	1	14024	14024		73.133	51.298	1	103080			3884	4859	2308	2343	3045	3045					-0.07231751761173655
EPDPEEWQL	9	Unmodified	_EPDPEEWQL_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1142.5000456228	1	1142.50005	1141.49277	1.6565	0.0018926	-0.21669	-0.00024756	1.4399	0.001645	1142.4996225054706	26.963	0.31376	26.952	26.856	27.17	-0.010645	120	70	1.5476005	0.040690303	1.5460811	313.6818	0	8.247498						448	14	3	NaN	NaN	NaN	0.0042638	1	14025	14025		104.2	78.084	1	52573			3885	4859	2308	2343	3046	3046					-0.07231751761173655
EPDPVSFSTF	10	Unmodified	_EPDPVSFSTF_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2585792471	2	563.258579	1124.50261	1.5574	0.00087724	-2.6737	-0.001506	-1.1163	-0.00062874	563.7580871821536	29.811	0.12065	29.803	29.707	29.828	-0.0070648	1266	55	0.85786515	0.03316474	0.8563457	347.81894	0	13.446533						56	6	2	NaN	NaN	NaN	0.77513	1	13430	13430		1.7022	0	1	4282.2	+		3886	8597	2309	2344	3047	3047					-0.05466563755817333
EPDPVSFSTF	10	Unmodified						0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.258579	1124.50261	1.8302	0.0010309	-5.91	-0.0033289	-4.0798	-0.002298	563.2563672797462	29.787	0.072403	29.787	29.763	29.836	0	1269	91	0.8560222	0.055250645	0.8560222	347.07172		22.401215	-0.0080993	-0.00211	-0.00016177	NaN	1.7022	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7904.8	+		3887	8597	2309	2344							-0.05466563755817333
EPDPVSFSTF	10	Unmodified						0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.258579	1124.50261	1.5574	0.00087724	-2.6737	-0.001506	-1.1163	-0.00062874	563.7580871821536	29.811	0.12065	29.803	29.707	29.828	-0.0070648	1266	55	0.85786515	0.03316474	0.8563457	347.81894		13.446533	0.0080993	0.0015358	0.00016177	NaN	1.7022	56	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4282.2	+		3888	8597	2309	2344							-0.05466563755817333
EPDSPPVAL	9	Unmodified	_EPDSPPVAL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4672889314	1	924.467289	923.460012	2.0615	0.0019058	0.78218	0.0007231	2.8437	0.0026289	924.4679054965565	23.417	0.19295	23.417	23.345	23.538	0	402	91	1.3804773	0.05356419	1.3804773	280.5963	0	10.887451						258	9	2	NaN	NaN	NaN	0.27442	1	6470	6470		20.555	9.007	1	20599			3889	5836	2310	2345	3048	3048					-0.0047791409338060475
EPDSPPVAL	9	Unmodified	_EPDSPPVAL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4672889314	1	924.467289	923.460012	1.5384	0.0014222	-1.2751	-0.0011788	0.26331	0.00024343	924.4664032347342	23.441	0.19304	23.427	23.355	23.548	-0.013294	399	97	1.382264	0.057129025	1.3807446	280.9595	0	11.612061						267	9	2	NaN	NaN	NaN	0.056143	1	6345	6345		44.302	27.718	1	21528			3890	5836	2310	2345	3049	3049					-0.0047791409338060475
EPDSWHWLL	9	Unmodified	_EPDSWHWLL_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.7825558699001	2	591.782556	1181.55056	0.94744	0.00056068	-2.8721	-0.0016997	-1.9247	-0.001139	591.7817186289096	30.92	0.21724	30.915	30.795	31.012	-0.0050716	1194	82	0.902037	0.049620926	0.9005176	365.51437	0	20.106873						470	10	5	NaN	NaN	NaN	0.16939	1	15282	15282		38.918	19.754	1	90082			3891	1463	2311	2346	3050	3050					-0.03295445045091583
EPDSWHWLL	9	Unmodified						0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.782556	1181.55056	1.0378	0.00061414	-0.7911	-0.00046816	0.24668	0.00014598	591.7823865275818	30.873	0.33785	30.873	30.801	31.139	0	1197	67	0.9001988	0.040434003	0.9001988	364.7695		16.384277	-0.02106	0.00087259	-0.00015938	NaN	38.918	305	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90630			3892	1463	2311	2346							-0.03295445045091583
EPDTNLVAL	9	Unmodified	_EPDTNLVAL_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1;ENST00000556963.5_1_14:77924568-77929110:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5044027192001	1	971.504403	970.497126	2.4268	0.0023576	-0.072417	-7.0353E-05	2.3544	0.0022873	971.503912878629	25.998	0.28963	25.998	25.901	26.191	0	264	67	1.4624695	0.039121985	1.4624695	297.05035	0	7.946289						374	13	2	NaN	NaN	NaN	0.048656	1	7616	7616		47.482	10.179	1	66769			3893	1259	2312	2347	3051	3051					0.01069757452387421
EPDTNLVAL	9	Unmodified	_EPDTNLVAL_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1;ENST00000556963.5_1_14:77924568-77929110:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5044027192001	1	971.504403	970.497126	2.1847	0.0021225	0.14916	0.00014491	2.3339	0.0022674	971.5051489693367	25.998	0.21721	25.987	25.89	26.107	-0.011137	264	67	1.4624695	0.039121985	1.46095	297.05035	0	7.946289						326	10	2	NaN	NaN	NaN	0.03618	1	7476	7476		52.78	5.2982	1	60529			3894	1259	2312	2347	3052	3052					0.01069757452387421
EPEAATHG	8	Unmodified	_EPEAATHG_					0	0	0		ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.358072833	1	811.358073	810.350796	1.6428	0.0013329	5.3286	0.0043234	6.9715	0.0056563	811.363102033548	40.464	0.45634	40.464	40.368	40.825	0	489	124	1.3285799	0.07356024	1.3285799	270.60065	0	14.982483						968	20	5	NaN	NaN	NaN	0.8439	1	4896	4896		3.1533	0.69183	1	266300			3895	7422	2313	2348	3053	3053					-0.06196499992847748
EPEDHYFLL	9	Unmodified	_EPEDHYFLL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7743964868	2	581.774396	1161.53424	2.0494	0.0011923	-0.86386	-0.00050257	1.1855	0.0006897	581.7735691243214	27.036	0.31367	27.036	26.964	27.277	0	1167	97	0.91857195	0.058813155	0.91857195	372.28848	0	23.836395						1015	14	4	NaN	NaN	NaN	0.025843	1	15195	15195		64.55	25.632	1	436300			3896	1989	2314	2349	3054	3054					-0.040065710018552636
EPEDHYFLL	9	Unmodified	_EPEDHYFLL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000541653.2_1_14:22054224-22054383:-|nuORF	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7743964868	2	581.774396	1161.53424	1.7901	0.0010414	-1.005	-0.00058469	0.78507	0.00045673	581.7736618788048	27.06	0.28961	27.049	26.977	27.267	-0.010126	1167	88	0.91857195	0.053290784	0.9170525	372.28848	0	21.598236						744	13	3	NaN	NaN	NaN	0.025843	1	14679	14679		64.55	25.632	1	393020			3897	1989	2314	2349	3055	3055					-0.040065710018552636
EPEDIVAEI	9	Unmodified	_EPEDIVAEI_					0	0	0		tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	tr|U7ST57|U7ST57_FUSNUCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=coaBCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4989829902999	1	1014.49898	1013.49171	1.869	0.0018961	1.5336	0.0015558	3.4026	0.0034519	1014.5009805929934	23.947	0.1688	23.934	23.886	24.054	-0.013048	246	67	1.4731345	0.0390929	1.4716152	299.03885	0	7.935669						254	8	3	NaN	NaN	NaN	0.025843	1	8938	8938		64.55	3.2787	1	29621			3898	13840	2315	2350	3056	3056					-0.014499661301101696
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.32551310685	2	684.325513	1366.63647	1.8072	0.0012367	-1.8149	-0.001242	-0.0077067	-5.2739E-06	684.3244889401132	15.222	0.21623	15.222	15.174	15.39	0	1089	40	0.96624947	0.023804069	0.96624947	390.9213	0	9.630554						265	10	4	NaN	NaN	NaN	0.00024841	1	19762	19762		80.241	51.945	1	33760			3899	13662	2316	2351	3057	3057					-0.03217949720897195
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.5527675601	3	456.552768	1366.63647	1.1305	0.00051615	-0.66515	-0.00030368	0.46539	0.00021247	456.5520712438362	15.222	0.31233	15.222	15.126	15.438	0	1404	55	0.77288127	0.033337533	0.77288127	469.03027	0	20.23117						390	14	4	NaN	NaN	NaN	0.3345	1	19763	19763		18.429	6.366	1	63017			3900	13662	2316	2351	3058	3058					-0.03217949720897195
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.32551310685	2	684.325513	1366.63647	1.6111	0.0011025	-2.1515	-0.0014723	-0.54035	-0.00036978	684.3238648249834	15.268	0.23991	15.256	15.184	15.424	-0.012202	1089	40	0.96624947	0.023804069	0.96473	390.9213	0	9.630554						250	11	3	NaN	NaN	NaN	0.00024841	1	18835	18835		80.241	59.727	1	34174			3901	13662	2316	2351	3059	3059					-0.03217949720897195
EPEEESERHIL	11	Unmodified	_EPEEESERHIL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.5527675601	3	456.552768	1366.63647	1.2572	0.00057399	-1.6181	-0.00073875	-0.36087	-0.00016476	456.5515898108513	15.268	0.19194	15.256	15.184	15.376	-0.012202	1404	55	0.77288127	0.033333838	0.7713618	469.03027	0	20.228973						363	9	4	NaN	NaN	NaN	0.29849	1	18836	18836		15.475	6.8992	1	67344			3902	13662	2316	2351	3060	3060					-0.03217949720897195
EPEICRFI	8	Unmodified	_EPEICRFI_					0	0	0			REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF	REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.75495252340005	2	503.754953	1005.49535	2.0009	0.001008	5.6467	0.0028445	7.6476	0.0038525	503.75763517660187	18.988	0.16794	18.988	18.94	19.108	0	1524	127	0.698637	0.07807511	0.698637	283.66592	0	31.700653						506	8	4	NaN	NaN	NaN	0.74229	1	8794	8794		16.417	2.3751	1	69852	+		3903	8729	2317	2352	3061	3061					-0.007175748372105772
EPELSWIE	8	Unmodified	_EPELSWIE_					0	0	0			REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.4778536177	1	1002.47785	1001.47058	2.0852	0.0020904	3.0775	0.0030852	5.1628	0.0051755	1002.4810308555915	22.091	0.21706	22.091	21.994	22.212	0	267	127	1.4606913	0.07465577	1.4606913	296.56067	0	15.157196						387	10	3	NaN	NaN	NaN	0.45125	1	8643	8643		33.698	1.2455	1	71913	+		3904	9226	2318	2353	3062	3062					-0.030099314389531173
EPELSWIE	8	Unmodified						0	0	0			REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	REV__nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1002.47785	1001.47058	2.0852	0.0020904	3.0775	0.0030852	5.1628	0.0051755	1002.4810308555915	22.091	0.21706	22.091	21.994	22.212	0	267	127	1.4606913	0.07465577	1.4606913	296.56067		15.157196	0	0	0	NaN	33.698	387	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71913	+		3905	9226	2318	2353							-0.030099314389531173
EPEPAAGA	8	Unmodified	_EPEPAAGA_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3413601363	1	741.34136	740.334084	1.478	0.0010957	4.4447	0.003295	5.9227	0.0043907	741.3454305476018	29.328	0.12067	29.32	29.272	29.393	-0.0077209	621	49	1.2495319	0.028809309	1.2480124	254.9012	0	5.877014						122	6	2	NaN	NaN	NaN	0.8439	1	3835	3835		3.1533	0.36816	1	7837.1	+		3906	10377	2319	2354	3063	3063					-0.04647000878810559
EPEPAAGA	8	Unmodified						0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.34136	740.334084	1.478	0.0010957	4.4447	0.003295	5.9227	0.0043907	741.3454305476018	29.328	0.12067	29.32	29.272	29.393	-0.0077209	621	49	1.2495319	0.028809309	1.2480124	254.9012		5.877014	-0.0042606	-0.0005484	-0.00075972	NaN	3.1533	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7837.1	+		3907	10377	2319	2354							-0.04647000878810559
EPEPEDPAL	9	Unmodified	_EPEPEDPAL_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4520327976999	1	996.452033	995.444756	1.6749	0.0016689	2.0088	0.0020017	3.6837	0.0036706	996.4535978403167	20.549	0.12029	20.549	20.501	20.622	0	357	43	1.407258	0.024972677	1.407258	285.73572	0	5.0705566						92	6	2	NaN	NaN	NaN	0.61413	1	8395	8395		4.9097	2.4482	1	6247.7			3908	549	2320	2355	3064	3064					-0.05314825681250568
EPEPEDPAL	9	Unmodified	_EPEPEDPAL_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4520327976999	1	996.452033	995.444756	1.8367	0.0018302	-1.1931	-0.0011889	0.64359	0.0006413	996.4506770324718	20.549	0.072231	20.535	20.511	20.584	-0.014141	357	40	1.407258	0.02319014	1.4057386	285.73575	0	4.7086487						60	4	2	NaN	NaN	NaN	0.025843	1	8224	8224		64.55	38.798	1	5044.6			3909	549	2320	2355	3065	3065					-0.05314825681250568
EPEPGEPLL	9	Unmodified	_EPEPGEPLL_					0	0	0		ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.75039007425	2	490.75039	979.486227	1.5618	0.00076647	-0.6268	-0.0003076	0.93503	0.00045886	490.75035163845297	24.84	0.14479	24.84	24.743	24.888	0	1332	46	0.8172735	0.027710617	0.8172735	331.9546	0	11.25531						121	7	2	NaN	NaN	NaN	0.20577	1	7862	7862		24.961	9.7856	1	14872			3910	2756	2321	2356	3066	3066					-0.004336449219067617
EPEPGEPLL	9	Unmodified	_EPEPGEPLL_					0	0	0		ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4935036819	1	980.493504	979.486227	1.8798	0.0018431	-0.1692	-0.0001659	1.7106	0.0016772	980.4930857353324	24.816	0.28958	24.816	24.695	24.985	0	309	76	1.435777	0.0445112	1.435777	291.59122	0	9.039734						371	13	3	NaN	NaN	NaN	0.0072287	1	7864	7864		98.041	42.547	1	65637			3911	2756	2321	2356	3067	3067					-0.004336449219067617
EPEPGEPLL	9	Unmodified	_EPEPGEPLL_					0	0	0		ENST00000484438.1_1_3:127872521-128060079:+|nuORF;nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENST00000484438.1_1_3:127872521-128060079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4935036819	1	980.493504	979.486227	1.7685	0.001734	2.1192	0.0020779	3.8877	0.0038119	980.4932701053748	24.791	0.36186	24.779	24.634	24.996	-0.012394	306	148	1.4375578	0.08714008	1.4360384	291.95288	0	17.697266						550	16	3	NaN	NaN	NaN	0.01047	1	7700	7700		91.429	32.829	1	83780			3912	2756	2321	2356	3068	3068					-0.004336449219067617
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(58)	0	0	1		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1093.5234236018	1	1093.52342	1092.51615	2.1275	0.0023265	-2.5196	-0.0027553	-0.39216	-0.00042884	1093.5204096142415	23.947	0.19294	23.947	23.899	24.092	0	144	115	1.533442	0.06730962	1.533442	310.97858	0	13.650238						521	9	4	NaN	NaN	NaN	0.030669	1	12495	12495		58.235	33.274	1	74259			3913	3238	2322	2357	3069	3069		360			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(64)	0	0	1		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2653500342001	2	547.26535	1092.51615	1.6508	0.00090341	-1.8498	-0.0010123	-0.19905	-0.00010893	547.2642292326614	23.947	0.28934	23.947	23.827	24.116	0	1263	94	0.85970795	0.057113945	0.85970795	348.68967	0	23.164886						653	13	5	NaN	NaN	NaN	0.026295	1	12496	12496		63.958	29.519	1	174320			3914	3238	2322	2357	3070	3070		360			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(90)	0	0	1		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1093.5234236018	1	1093.52342	1092.51615	1.7123	0.0018724	-1.9856	-0.0021713	-0.27336	-0.00029893	1093.5214207141564	23.947	0.19294	23.934	23.886	24.079	-0.013048	144	115	1.533442	0.067302465	1.5319226	310.97858	0	13.648804						538	9	4	NaN	NaN	NaN	0.010878	1	12183	12183		90.252	55.813	1	69026			3915	3238	2322	2357	3071	3071		360			-0.026410292482069053
EPEQFVVVM	9	Oxidation (M)	_EPEQFVVVM(Oxidation (M))_		EPEQFVVVM(1)		EPEQFVVVM(64)	0	0	1		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2653500342001	2	547.26535	1092.51615	1.8105	0.00099083	-1.3921	-0.00076187	0.41838	0.00022896	547.2649021328607	23.947	0.31356	23.934	23.861	24.175	-0.013048	1263	82	0.85970795	0.049744427	0.8581885	348.68967	0	20.175873						636	14	5	NaN	NaN	NaN	0.026295	1	12184	12184		63.958	25.827	1	173700			3916	3238	2322	2357	3072	3072		360			-0.026410292482069053
EPEQNLWL	8	Unmodified	_EPEQNLWL_					0	0	0			REV__nc|ENSG00000112584|Q96EK7-3|FAM120B	REV__nc|ENSG00000112584|Q96EK7-3|FAM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7560067684001	2	514.756007	1027.49746	0.9393	0.00048351	-1.6567	-0.00085278	-0.71736	-0.00036927	514.7554813360451	30.221	0.14477	30.214	30.19	30.335	-0.0064106	1317	58	0.8265074	0.035088718	0.82498795	335.48785	0	14.242859						132	7	2	NaN	NaN	NaN	0.67765	1	9467	9467		20.449	2.6497	1	10407	+		3917	9124	2323	2358	3073	3073					-0.01518822827756594
EPERLIYS	8	Unmodified	_EPERLIYS_					0	0	0		ENST00000360612.4_1_22:50357538-50357607:+|nuORF	ENST00000360612.4_1_22:50357538-50357607:+|nuORF	ENST00000360612.4_1_22:50357538-50357607:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.76383180050004	2	503.763832	1005.51311	1.421	0.00071586	-11.248	-0.0056661	-9.8266	-0.0049503	503.7581616936151	19.178	0.26444	19.164	19.068	19.332	-0.014141	1521	115	0.70049703	0.07063162	0.6989776	284.42117	0	28.678406						551	12	3	NaN	NaN	NaN	0.67765	1	8626	8626		20.449	1.3303	1	55907			3918	6599	2324	2359	3074	3074					0.010574636892897615
EPERLIYS	8	Unmodified						0	0	0		ENST00000360612.4_1_22:50357538-50357607:+|nuORF	ENST00000360612.4_1_22:50357538-50357607:+|nuORF	ENST00000360612.4_1_22:50357538-50357607:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.763832	1005.51311	2.0009	0.001008	-11.979	-0.0060347	-9.9784	-0.0050268	503.75763517660187	18.988	0.16794	18.988	18.94	19.108	0	1524	127	0.698637	0.07807511	0.698637	283.66592		31.700653	-0.087799	-0.00032971	-0.0001703	NaN	20.449	506	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69852			3919	6599	2324	2359							0.010574636892897615
EPERVASVL	9	Unmodified	_EPERVASVL_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.27710635125	2	500.277106	998.53966	1.5667	0.00078378	-1.2225	-0.00061159	0.34419	0.00017219	500.276103004258	18.842	0.096144	18.828	18.804	18.9	-0.014059	1314	58	0.8283535	0.035084903	0.8268341	336.3661	0	14.246796						121	5	3	NaN	NaN	NaN	0.18779	1	8349	8349		26.115	9.6983	1	9347.9			3920	2625	2325	2360	3075	3075					0.04033152580609567
EPETQAPP	8	Unmodified	_EPETQAPP_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4046886745999	1	868.404689	867.397412	1.4286	0.0012406	-0.37075	-0.00032196	1.0578	0.00091864	868.4040528918066	20.718	0.07235	20.718	20.694	20.766	0	459	61	1.3464937	0.035823703	1.3464937	273.94852	0	7.288452						92	4	2	NaN	NaN	NaN	0.73961	1	5627	5627		16.584	1.4088	1	7039.5			3921	1185	2326	2361	3076	3076					-0.04159060161578054
EPFKFLEPTL	10	Unmodified	_EPFKFLEPTL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8317144004501	2	610.831714	1219.64888	1.0091	0.00061641	-2.1118	-0.00129	-1.1027	-0.00067356	610.8305725346744	28.822	0.12067	28.822	28.774	28.894	0	1158	46	0.92408	0.027534425	0.92408	374.3114	0	11.153198						157	6	3	NaN	NaN	NaN	0.50283	1	16973	16973		19.336	4.9114	1	21646			3922	2044	2327	2362	3077	3077					0.04783738480091415
EPFPVESSL	9	Unmodified	_EPFPVESSL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4935036819	1	1004.4935	1003.48623	2.1922	0.002202	0.28139	0.00028266	2.4736	0.0024847	1004.4939886360512	26.239	0.16892	26.239	26.215	26.384	0	273	94	1.4571344	0.055111766	1.4571344	295.83047	0	11.188904						211	8	2	NaN	NaN	NaN	0.013281	1	8719	8719		82.96	46.374	1	19188			3923	1863	2328	2363	3078	3078					-0.015376449219047572
EPFPVESSL	9	Unmodified	_EPFPVESSL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4935036819	1	1004.4935	1003.48623	1.8885	0.001897	-1.6208	-0.001628	0.26774	0.00026895	1004.4915753769709	26.263	0.16888	26.252	26.204	26.373	-0.011137	273	73	1.4571344	0.042678475	1.4556149	295.83047	0	8.664703						197	8	2	NaN	NaN	NaN	0.021105	1	8543	8543		70.6	34.013	1	19636			3924	1863	2328	2363	3079	3079					-0.015376449219047572
EPGAGEVL	8	Unmodified	_EPGAGEVL_					0	0	0		ENST00000498414.5_1_6:30312932-30313142:+|nuORF	ENST00000498414.5_1_6:30312932-30313142:+|nuORF	ENST00000498414.5_1_6:30312932-30313142:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.3883103289	1	771.38831	770.381034	1.468	0.0011324	-1.1975	-0.00092374	0.27051	0.00020867	771.386580110578	21.248	0.16842	21.234	21.186	21.354	-0.014004	603	85	1.2603331	0.050356984	1.2588136	256.92224	0	10.265427						198	8	2	NaN	NaN	NaN	0.57691	1	4288	4288		26.732	0	1	21555			3925	7303	2329	2364	3080	3080					-0.01334141327663474
EPGPVGGGG	9	Unmodified	_EPGPVGGGG_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3416944873003	1	726.341694	725.334418	1.3526	0.00098242	-0.054313	-3.945E-05	1.2982	0.00094297	726.34186527055	21.488	0.14456	21.488	21.464	21.609	0	1332	46	0.8172735	0.027710617	0.8172735	166.78432	0	5.655014						162	7	3	NaN	NaN	NaN	0.6907	1	3687	3687		0	0	1	19835			3926	5536	2330	2365	3081	3081					-0.03923581158926481
EPGPVGGGG	9	Unmodified	_EPGPVGGGG_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3416944873003	1	726.341694	725.334418	1.9684	0.0014298	-0.76697	-0.00055708	1.2015	0.00087267	726.3409260184985	18.458	0.12	18.444	18.42	18.54	-0.01395	1350	49	0.80618626	0.029569209	0.8046668	164.5217	0	6.0343018						124	6	2	NaN	NaN	NaN	0.6907	1	3604	3604		0	0	1	12187			3927	5536	2330	2365	3082	3082					-0.03923581158926481
EPGSDQNVSI	10	Unmodified	_EPGSDQNVSI_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.24346049915	2	523.24346	1044.47237	1.0896	0.00057013	6.0172	0.0031484	7.1068	0.0037186	523.7468857238619	32.37	0.14479	32.37	32.321	32.466	0	1296	52	0.8394264	0.031361163	0.8394264	340.65857	0	12.727081						174	7	4	NaN	NaN	NaN	0.63397	1	10388	10388		12.57	3.6077	1	22278	+		3928	8250	2331	2366	3083	3083					-0.048089224209888926
EPGTGDLRFL	10	Unmodified	_EPGTGDLRFL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7878382130501	2	552.787838	1103.56112	0.90943	0.00050272	4.6179	0.0025527	5.5273	0.0030554	552.7899864344298	24.357	0.12065	24.357	24.309	24.43	0	1242	40	0.87260187	0.023935497	0.87260187	353.87515	0	9.706787						82	6	2	NaN	NaN	NaN	0.47445	1	12999	12999		20.513	0.064659	1	18468			3929	6143	2332	2367	3084	3084					0.013485376093512969
EPHFPKEW	8	Unmodified	_EPHFPKEW_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.25871663285	2	535.258717	1068.50288	1.6732	0.00089558	-5.7008	-0.0030514	-4.0277	-0.0021558	535.2559758529924	29.16	0.12065	29.16	29.063	29.184	0	1266	52	0.85786515	0.031327307	0.85786515	348.03964	0	12.709625						110	6	2	NaN	NaN	NaN	0.82212	1	11481	11481		6.2502	0.55606	1	10952	+		3930	10571	2333	2368	3085	3085					-0.028630992453145154
EPHFPKEW	8	Unmodified						0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.258717	1068.50288	1.6732	0.00089558	-5.7008	-0.0030514	-4.0277	-0.0021558	535.2559758529924	29.16	0.12065	29.16	29.063	29.184	0	1266	52	0.85786515	0.031327307	0.85786515	348.03964		12.709625	0	0	0	NaN	6.2502	110	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10952	+		3931	10571	2333	2368							-0.028630992453145154
EPHIACRTSK	10	Unmodified	_EPHIACRTSK_					0	0	0			REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.29276480295	2	571.292765	1140.57098	1.7991	0.0010278	2.5756	0.0014714	4.3747	0.0024992	571.2940550513634	15.822	0.048006	15.822	15.774	15.822	0	1167	40	0.91857195	0.023873508	0.91857195	372.36877	0	9.677765						49	3	2	NaN	NaN	NaN	0.65442	1	14469	14469		11.17	2.2084	1	5446.4	+		3932	11752	2334	2369	3086	3086					0.0063140234306047205
EPHIACRTSK	10	Unmodified						0	0	0			REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.292765	1140.57098	1.7991	0.0010278	2.5756	0.0014714	4.3747	0.0024992	571.2940550513634	15.822	0.048006	15.822	15.774	15.822	0	1167	40	0.91857195	0.023873508	0.91857195	372.36877		9.677765	-0.064315	-6.0994E-05	0.00075972	NaN	11.17	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5446.4	+		3933	11752	2334	2369							0.0063140234306047205
EPHIACRTSK	10	Unmodified						0	0	0			REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.292765	1140.57098	1.9048	0.0010882	2.6494	0.0015136	4.5542	0.0026018	571.294163581179	15.963	0.16763	15.951	15.879	16.047	-0.012611	1167	40	0.91857195	0.023873508	0.9170525	372.36877		9.677765	0.064315	2.3365E-05	-0.00075972	NaN	11.17	115	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11545	+		3934	11752	2334	2369							0.0063140234306047205
EPHLSGPVLN	10	Unmodified	_EPHLSGPVLN_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7825558699001	2	531.782556	1061.55056	1.6797	0.00089323	-3.8339	-0.0020388	-2.1542	-0.0011456	531.7808076239784	20.333	0.14424	20.333	20.285	20.429	0	1254	106	0.8652351	0.06445563	0.8652351	351.0589	0	26.15207						197	7	2	NaN	NaN	NaN	0.41164	1	11183	11183		23.118	0.99124	1	40601			3935	5785	2335	2370	3087	3087					0.022245549549097632
EPHPYSLEL	9	Unmodified	_EPHPYSLEL_					0	0	0		ENST00000430246.6_1_14:21731938-21732019:-|nuORF;ENST00000554969.5_1_14:21731935-21737553:-|nuORF	ENST00000430246.6_1_14:21731938-21732019:-|nuORF	ENST00000430246.6_1_14:21731938-21732019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5309518206998	1	1084.53095	1083.52368	1.6607	0.0018011	-6.4927	-0.0070415	-4.832	-0.0052404	1084.523927888934	28.484	0.072433	28.484	28.46	28.532	0	93	64	1.5635144	0.037112713	1.5635144	317.11002	0	7.5271606						102	4	3	NaN	NaN	NaN	0.29681	1	12118	12118		19.118	1.3193	1	7557.1			3936	6963	2336	2371	3088	3088					-0.014745536562941197
EPHPYSLEL	9	Unmodified						0	0	0		ENST00000430246.6_1_14:21731938-21732019:-|nuORF;ENST00000554969.5_1_14:21731935-21737553:-|nuORF	ENST00000430246.6_1_14:21731938-21732019:-|nuORF	ENST00000430246.6_1_14:21731938-21732019:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1084.53095	1083.52368	1.4895	0.0016155	-6.0344	-0.0065445	-4.5448	-0.004929	1084.5226057938676	28.507	0.072365	28.499	28.475	28.547	-0.0083485	93	55	1.5635144	0.03180921	1.5619949	317.11002		6.4515076	0.0075407	0.00029675	-0.00075972	NaN	19.118	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6199.9			3937	6963	2336	2371							-0.014745536562941197
EPHRRYFRDE	10	Unmodified	_EPHRRYFRDE_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.8419990485501	2	702.841999	1403.66945	0.29082	0.0002044	1.8801	0.0013214	2.171	0.0015258	702.8424713124543	38.155	0.07209	38.155	38.131	38.203	0	1182	43	0.9093879	0.025725186	0.9093879	367.8192	0	10.405029						93	4	3	NaN	NaN	NaN	0.77421	1	20094	20094		1.9246	0.41924	1	6885.6	+		3938	8140	2337	2372	3089	3089					-0.016242780875245444
EPHRRYFRDE	10	Unmodified						0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	702.841999	1403.66945	0.29082	0.0002044	1.8801	0.0013214	2.171	0.0015258	702.8424713124543	38.155	0.07209	38.155	38.131	38.203	0	1182	43	0.9093879	0.025725186	0.9093879	367.8192		10.405029	0	0	0	NaN	1.9246	93	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6885.6	+		3939	8140	2337	2372							-0.016242780875245444
EPHSDMLQQSE	11	Unmodified	_EPHSDMLQQSE_					0	0	0			REV__ENSG00000070182|ENST00000644917|SPTB	REV__ENSG00000070182|ENST00000644917|SPTB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.1873198180333	3	434.18732	1299.54013	1.6352	0.00071	8.1768	0.0035502	9.812	0.0042602	434.1909710004149	15.268	0.096003	15.256	15.232	15.328	-0.012202	1509	37	0.70793515	0.022309542	0.7064157	429.8388	0	13.545746						51	5	2	NaN	NaN	NaN	0.77466	1	17934	17934		0.33451	0.15019	1	4138.5	+		3940	8567	2338	2373	3090	3090					-0.09765840552518057
EPIAKARERE	10	Unmodified	_EPIAKARERE_					0	0	0			REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8305686950001	2	599.830569	1197.64658	1.4567	0.00087375	-0.32625	-0.0001957	1.1304	0.00067805	599.8302041209674	23.754	0.072227	23.741	23.693	23.765	-0.013048	1164	43	0.9204082	0.025705755	0.91888875	372.90067	0	10.414612						78	4	3	NaN	NaN	NaN	0.77024	1	15758	15758		2.8895	0	1	8237.9	+		3941	10315	2339	2374	3091	3091					0.05566702794999401
EPIASANLI	9	Unmodified	_EPIASANLI_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.514573475	1	927.514573	926.507297	1.2296	0.0011404	6.5723	0.0060959	7.8018	0.0072363	927.519970022444	27.639	0.048258	27.629	27.605	27.653	-0.009552	300	34	1.4411188	0.019582868	1.4395994	292.90817	0	3.9802246						51	3	2	NaN	NaN	NaN	0.54912	1	6397	6397		7.5876	0.72439	1	3989.2	+		3942	8376	2340	2375	3092	3092					0.04110365177609765
EPIFEDVMM	9	Unmodified	_EPIFEDVMM_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1110.4845952545	1	1110.4846	1109.47732	1.1279	0.0012526	0.18304	0.00020326	1.311	0.0014558	1110.4863853167928	31.525	0.14482	31.525	31.501	31.646	0	126	94	1.544062	0.054814458	1.544062	313.07254	0	11.114136						231	7	3	NaN	NaN	NaN	0.036546	1	13244	13244		52.624	35.766	1	22627			3943	8073	2341	2376	3093	3093					-0.07304077874232462
EPIFEDVMM	9	Unmodified	_EPIFEDVMM_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.4845952545	1	1110.4846	1109.47732	0.45747	0.00050802	-0.71616	-0.00079529	-0.25869	-0.00028727	1110.483724711977	31.524	0.096556	31.519	31.495	31.592	-0.0044174	123	64	1.5458313	0.037152052	1.5443119	313.43127	0	7.532898						191	5	3	NaN	NaN	NaN	0.030669	1	12875	12875		58.235	39.117	1	19850			3944	8073	2341	2376	3094	3094					-0.07304077874232462
EPIFEDVMM	9	2 Oxidation (M)	_EPIFEDVM(Oxidation (M))M(Oxidation (M))_		EPIFEDVM(1)M(1)		EPIFEDVM(50)M(50)	0	0	2		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.4744244987	1	1142.47442	1141.46715	2.441	0.0027887	1.0545	0.0012048	3.4955	0.0039935	1142.4762332631112	23.995	0.096485	23.995	23.971	24.068	0	132	97	1.5405227	0.05661571	1.5405227	312.2473	0	11.475403						205	5	3	NaN	NaN	NaN	0.043119	1	14495	14495		49.833	25.271	1	16826			3945	8073	2341	2377	3095	3095		644;645			-0.09792685599472861
EPIFEDVMM	9	Oxidation (M)	_EPIFEDVMM(Oxidation (M))_		EPIFEDVM(0.114)M(0.886)		EPIFEDVM(-8.9)M(8.9)	0	0	1		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.4795098765999	1	1126.47951	1125.47223	1.0258	0.0011555	4.5539	0.0051298	5.5796	0.0062853	1126.486732667339	28.218	0.048346	28.209	28.185	28.233	-0.0089779	126	115	1.544062	0.067174196	1.5425426	313.01782	0	13.617828						144	3	3	NaN	NaN	NaN	0.023828	1	13459	13459		67.154	27.696	2	14662			3946	8073	2341	2378	3096	3096		644;645			-0.0854838173686403
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(120)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4968745003	1	1112.49687	1111.4896	2.4634	0.0027405	-0.69374	-0.00077179	1.7697	0.0019688	1112.4961445856263	26.167	0.24135	26.167	26.094	26.336	0	132	97	1.5405227	0.05663371	1.5405227	312.348	0	11.482727						451	11	4	NaN	NaN	NaN	0.00020136	1	13331	13331		116.74	90.621	1	53116			3947	2312	2342	2379	3097	3097		265			-0.061687181395427615
EPIPYEFMA	9	Oxidation (M)	_EPIPYEFM(Oxidation (M))A_		EPIPYEFM(1)A		EPIPYEFM(42)A	0	0	1		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.4968745003	1	1112.49687	1111.4896	1.7708	0.00197	-1.234	-0.0013728	0.53679	0.00059718	1112.4953587137163	26.167	0.24128	26.156	26.083	26.324	-0.011135	126	97	1.544062	0.05661571	1.5425426	313.06558	0	11.479095						401	11	3	NaN	NaN	NaN	0.062072	1	12955	12955		41.785	25.368	1	55120			3948	2312	2342	2379	3098	3098		265			-0.061687181395427615
EPIRPCLACQL	11	Carbamidomethyl (C)	_EPIRPCLAC(Carbamidomethyl (C))QL_	EPIRPCLAC(1)QL		EPIRPC(-37)LAC(37)QL		0	1	0		ENST00000357681.9_1_1:203652278-203652389:+|nuORF	ENST00000357681.9_1_1:203652278-203652389:+|nuORF	ENST00000357681.9_1_1:203652278-203652389:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3310326837001	2	650.331033	1298.64751	2.5439	0.0016544	5.7443	0.0037357	8.2883	0.0053901	650.3353282460636	25.322	0.33779	25.322	25.226	25.564	0	1152	136	0.92775106	0.08257669	0.92775106	375.54245	0	33.426056						1381	15	6	NaN	NaN	NaN	0.0040393	1	18754	18754		75.089	25.128	2	1673400			3949	6579	2343	2380	3099	3099	4				0.010134578480347045
EPISVEVQL	9	Unmodified	_EPISVEVQL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.2793146892	2	507.279315	1012.54408	1.6582	0.00084117	-2.7356	-0.0013877	-1.0774	-0.00054654	507.2780332404616	27.326	0.21724	27.326	27.253	27.471	0	1287	94	0.8449601	0.057181895	0.8449601	343.04498	0	23.215271						409	10	3	NaN	NaN	NaN	0.062072	1	9086	9086		41.785	10.223	1	74291			3950	3164	2344	2381	3100	3100					0.03830617003529824
EPISVEVQL	9	Unmodified	_EPISVEVQL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.2793146892	2	507.279315	1012.54408	0.98403	0.00049918	-1.4362	-0.00072856	-0.45219	-0.00022938	507.2785570409331	27.349	0.2172	27.339	27.267	27.484	-0.010126	1284	94	0.8468043	0.057188094	0.8452849	343.79367	0	23.217773						408	10	3	NaN	NaN	NaN	0.04947	1	8910	8910		47.136	14.683	1	63223			3951	3164	2344	2381	3101	3101					0.03830617003529824
EPIWNEVGL	9	Unmodified	_EPIWNEVGL_					0	0	0		TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5360371986	1	1056.53604	1055.52876	1.5229	0.001609	-1.7846	-0.0018855	-0.26172	-0.00027652	1057.5375567606752	30.753	0.14481	30.753	30.704	30.849	0	189	76	1.5068626	0.04432726	1.5068626	305.72192	0	8.993408						216	7	3	NaN	NaN	NaN	0.08308	1	10888	10888		50.315	29.866	1	23811			3952	4486	2345	2382	3102	3102					0.003217502063534994
EPIWNEVGL	9	Unmodified	_EPIWNEVGL_					0	0	0		TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5360371986	1	1056.53604	1055.52876	1.3134	0.0013877	-1.4761	-0.0015595	-0.16267	-0.00017187	1056.5359979308248	30.727	0.096485	30.722	30.698	30.794	-0.0057545	186	82	1.5086359	0.04788363	1.5071164	306.0817	0	9.714935						215	5	3	NaN	NaN	NaN	0.3947	1	10660	10660		20.449	8.9002	1	23528			3953	4486	2345	2382	3103	3103					0.003217502063534994
EPLAAPGG	8	Unmodified	_EPLAAPGG_					0	0	0		ENSG00000180818|ENST00000303460|HOXC10	REV__ENST00000484061.5_1_2:47221416-47221539:+|nuORF	REV__ENST00000484061.5_1_2:47221416-47221539:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3671809563001	1	711.367181	710.359904	1.2994	0.00092436	2.0195	0.0014366	3.319	0.002361	711.3669372427711	30.415	0.048275	30.415	30.415	30.463	0	657	40	1.2279087	0.023436308	1.2279087	250.68222	0	4.784622						47	3	2	NaN	NaN	NaN	0.84455	1	3426	3426		2.7852	1.5433	1	2841.5			3954	5204	2346	2383	3104	3104					-0.006861066365217994
EPLADIKNR	9	Unmodified	_EPLADIKNR_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.29583042065	2	528.29583	1054.57711	1.8346	0.00096922	-9.1214	-0.0048188	-7.2868	-0.0038496	528.290744641034	36.348	0.096291	36.35	36.326	36.422	0.0016747	1263	28	0.85970795	0.016583264	0.8581885	348.8459	0	6.729004						73	5	3	NaN	NaN	NaN	0.62619	1	10621	10621		4.4131	0.44458	1	3856.5	+		3955	11222	2347	2384	3105	3105					0.05200243846206831
EPLAESITDVL	11	Unmodified	_EPLAESITDVL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.81371861255	2	593.813719	1185.61288	0.91405	0.00054278	-0.39062	-0.00023196	0.52343	0.00031082	593.8136846240826	31.404	0.24138	31.404	31.356	31.597	0	1206	118	0.894683	0.0717057	0.894683	362.5201	0	29.054688						726	11	5	NaN	NaN	NaN	0.017073	1	16035	16035		63.958	23.804	1	306830			3956	3419	2348	2385	3106	3106					0.02750236512565607
EPLAESITDVL	11	Unmodified	_EPLAESITDVL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.81371861255	2	593.813719	1185.61288	0.88568	0.00052593	-0.8351	-0.00049589	0.050577	3.0033E-05	593.8131673631813	31.403	0.19302	31.398	31.326	31.519	-0.0050716	1203	100	0.8965218	0.060687065	0.89500237	363.26517	0	24.590057						644	9	4	NaN	NaN	NaN	0.0034125	1	15423	15423		75.698	42.273	1	297030			3957	3419	2348	2385	3107	3107					0.02750236512565607
EPLPLTAK	8	Unmodified	_EPLPLTAK_					0	0	0			REV__ENST00000412639.2_1_1:9251592-9251730:+|nuORF	REV__ENST00000412639.2_1_1:9251592-9251730:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.5138451935001	1	868.513845	867.506569	1.7094	0.0014847	-2.9714	-0.0025807	-1.262	-0.0010961	868.512417379838	30.294	0.072397	30.294	30.246	30.318	0	435	46	1.360811	0.026837707	1.360811	276.86087	0	5.4602356						94	4	2	NaN	NaN	NaN	0.84727	1	5635	5635		1.2418	0	1	9638.8	+		3958	12072	2349	2386	3108	3108					0.06751570528570028
EPLSGEEAL	9	Unmodified	_EPLSGEEAL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4571181756002	1	944.457118	943.449842	1.4322	0.0013526	0.67437	0.00063692	2.1066	0.0019896	944.4581550864564	21.32	0.14435	21.32	21.272	21.416	0	339	43	1.4179583	0.024962068	1.4179583	288.125	0	5.072235						114	7	2	NaN	NaN	NaN	0.042816	1	6898	6898		49.961	20.363	1	8279.7			3959	1354	2350	2387	3109	3109					-0.024145218186049533
EPMESCRPGQH	11	Unmodified	_EPMESCRPGQH_					0	0	0		ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.18162320063334	3	424.181623	1269.52304	1.4099	0.00059805	7.2346	0.0030688	8.6445	0.0036668	424.18481757646435	12.028	0.12001	12.028	12.004	12.124	0	1515	34	0.7042165	0.020456016	0.7042165	427.6871	0	12.423401						129	6	3	NaN	NaN	NaN	0.62211	1	18218	18218		6.3563	0.42276	1	11887			3960	3552	2351	2388	3110	3110					-0.10094039639307084
EPMMQQAI	8	Unmodified	_EPMMQQAI_					0	0	0			REV__nc|ENSG00000131100|P36543-3|ATP6V1E1	REV__nc|ENSG00000131100|P36543-3|ATP6V1E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.21988828555	2	474.219888	946.425224	1.2905	0.000612	-8.5408	-0.0040502	-7.2502	-0.0034382	474.21623866324126	16.419	0.14387	16.406	16.334	16.478	-0.012995	1350	46	0.80618626	0.027734637	0.8046668	327.60962	0	11.270508						113	7	2	NaN	NaN	NaN	0.80692	1	6850	6850		8.2903	0.74991	1	8848.7	+		3961	9507	2352	2389	3111	3111					-0.050131964973388676
EPNFNVGDIY	10	Unmodified	_EPNFNVGDIY_					0	0	0			REV__nc|ENSG00000142185|O94759-2|TRPM2	REV__nc|ENSG00000142185|O94759-2|TRPM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2694782844001	2	584.269478	1166.5244	2.1661	0.0012656	-3.0944	-0.001808	-0.92831	-0.00054238	584.2661339105022	30.077	0.12072	30.077	30.004	30.125	0	1194	67	0.902037	0.04046023	0.902037	365.5687	0	16.397339						141	6	2	NaN	NaN	NaN	0.60686	1	15347	15347		14.425	0.96197	1	17111	+		3962	9840	2353	2390	3112	3112					-0.052197590072410094
EPNFNVGDIY	10	Unmodified						0	0	0			REV__nc|ENSG00000142185|O94759-2|TRPM2	REV__nc|ENSG00000142185|O94759-2|TRPM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.269478	1166.5244	2.1661	0.0012656	-3.0944	-0.001808	-0.92831	-0.00054238	584.2661339105022	30.077	0.12072	30.077	30.004	30.125	0	1194	67	0.902037	0.04046023	0.902037	365.5687		16.397339	0.027824	-0.0013991	0.0016788	NaN	14.425	141	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17111	+		3963	9840	2353	2390							-0.052197590072410094
EPNGQGVP	8	Unmodified	_EPNGQGVP_					0	0	0			REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.19304237085004	2	399.193042	796.371532	1.0574	0.00042212	4.2486	0.001696	5.3061	0.0021181	399.19485550058016	29.135	0.14482	29.127	29.103	29.248	-0.0077229	1401	40	0.77473325	0.024075806	0.7732138	315.67563	0	9.810028						125	7	3	NaN	NaN	NaN	0.84756	1	4612	4612		1.072	0	1	13198	+		3964	12426	2354	2391	3113	3113					-0.034799096131791885
EPNIVTEKWQ	10	Unmodified	_EPNIVTEKWQ_					0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.21542714366666	3	415.215427	1242.62445	1.4947	0.00062063	-5.8398	-0.0024248	-4.3451	-0.0018041	415.21321264901275	18.914	0.072102	18.9	18.876	18.948	-0.014059	1482	34	0.72465914	0.020429373	0.7231397	440.2048	0	12.410095						76	4	2	NaN	NaN	NaN	0.71559	1	16855	16855		5.6972	3.2361	1	8801.2	+		3965	10408	2355	2392	3114	3114					0.01284478326556382
EPNIVTEKWQ	10	Unmodified						0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	415.215427	1242.62445	1.8334	0.00076124	-7.6789	-0.0031884	-5.8456	-0.0024272	415.21281491673176	18.916	0.096024	18.916	18.892	18.988	0	1476	34	0.72837335	0.020427108	0.72837335	442.46106		12.408752	0.0082738	-0.001283	0.0026168	NaN	5.6972	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8321.4	+		3966	10408	2355	2392							0.01284478326556382
EPNIVTEKWQ	10	Unmodified						0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	415.215427	1242.62445	1.4947	0.00062063	-5.8398	-0.0024248	-4.3451	-0.0018041	415.21321264901275	18.914	0.072102	18.9	18.876	18.948	-0.014059	1482	34	0.72465914	0.020429373	0.7231397	440.2048		12.410095	-0.0082738	0.001008	-0.0026168	NaN	5.6972	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8801.2	+		3967	10408	2355	2392							0.01284478326556382
EPNPDDPLM	9	Unmodified	_EPNPDDPLM_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.22368218475	2	514.223682	1026.43281	2.3102	0.0011879	-3.2436	-0.001668	-0.93347	-0.00048001	514.2221390533161	22.935	0.24088	22.935	22.838	23.079	0	1341	49	0.8117308	0.029562771	0.8117308	329.49442	0	12						236	11	3	NaN	NaN	NaN	0.16939	1	9613	9613		27.296	9.5159	1	35106			3968	864	2356	2393	3115	3115					-0.0793476569606355
EPNPDDPLM	9	Unmodified	_EPNPDDPLM_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.4400879029	1	1027.44009	1026.43281	2.3986	0.0024644	-0.88487	-0.00090915	1.5137	0.0015552	1027.4396559716433	22.959	0.31325	22.959	22.838	23.152	0	273	64	1.4571344	0.037353635	1.4571344	295.7408	0	7.5813293						414	14	3	NaN	NaN	NaN	0.010878	1	9614	9614		90.252	63.52	1	60556			3969	864	2356	2393	3116	3116					-0.0793476569606355
EPNPDDPLM	9	Unmodified	_EPNPDDPLM_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.22368218475	2	514.223682	1026.43281	1.3092	0.0006732	-1.8164	-0.00093405	-0.50727	-0.00026085	514.2232891290959	22.934	0.19289	22.921	22.848	23.041	-0.01354	1341	49	0.8117308	0.029562771	0.81021136	329.49442	0	12						216	9	3	NaN	NaN	NaN	0.070055	1	9422	9422		40.154	23.57	1	30843			3970	864	2356	2393	3117	3117					-0.0793476569606355
EPNPDDPLM	9	Unmodified	_EPNPDDPLM_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.4400879029	1	1027.44009	1026.43281	1.6496	0.0016948	-0.20602	-0.00021168	1.4435	0.0014832	1027.44027995232	22.958	0.28915	22.945	22.824	23.113	-0.01354	273	64	1.4571344	0.0373497	1.4556149	295.7408	0	7.580536						350	13	2	NaN	NaN	NaN	0.024359	1	9423	9423		66.481	44.71	1	61763			3971	864	2356	2393	3118	3118					-0.0793476569606355
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(53)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2211394958	2	522.221139	1042.42773	1.9027	0.00099361	-2.1457	-0.0011205	-0.24299	-0.00012689	522.2202590250622	19.9	0.28846	19.9	19.756	20.045	0	1335	58	0.8154261	0.035092473	0.8154261	330.9272	0	14.241699						411	13	4	NaN	NaN	NaN	0.03618	1	10299	10299		52.78	29.445	1	102320			3972	864	2356	2394	3119	3119		93			-0.09179069558695119
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(56)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.4350025249998	1	1043.435	1042.42773	1.9847	0.0020709	-0.2765	-0.00028851	1.7082	0.0017824	1043.434786862256	19.9	0.26445	19.9	19.78	20.045	0	255	64	1.4678029	0.037333846	1.4678029	297.8455	0	7.5757446						335	12	3	NaN	NaN	NaN	0.032689	1	10300	10300		55.592	35.036	1	37947			3973	864	2356	2394	3120	3120		93			-0.09179069558695119
EPNPDDPLM	9	Oxidation (M)	_EPNPDDPLM(Oxidation (M))_		EPNPDDPLM(1)		EPNPDDPLM(78)	0	0	1		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.4350025249998	1	1043.435	1042.42773	1.5245	0.0015907	-0.035914	-3.7474E-05	1.4886	0.0015532	1043.435281186768	19.9	0.28885	19.885	19.765	20.054	-0.014141	252	58	1.4695803	0.033774614	1.4680609	298.20618	0	6.8535156						306	13	3	NaN	NaN	NaN	0.015447	1	10092	10092		77.761	49.972	1	32309			3974	864	2356	2394	3121	3121		93			-0.09179069558695119
EPNPESLEL	9	Unmodified	_EPNPESLEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.4942319634	1	1027.49423	1026.48696	1.9988	0.0020537	-0.80615	-0.00082831	1.1926	0.0012254	1027.4942359214233	24.767	0.26544	24.767	24.695	24.96	0	252	106	1.4695803	0.06223619	1.4695803	298.26666	0	12.6315						494	12	4	NaN	NaN	NaN	0.0068607	1	9623	9623		98.792	51.31	1	98621			3975	1267	2357	2395	3122	3122					-0.025228502728623425
EPNPESLEL	9	Unmodified	_EPNPESLEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.250754215	2	514.250754	1026.48696	1.1523	0.00059255	-1.0346	-0.00053206	0.11761	6.0482E-05	514.2499926371639	24.767	0.2654	24.755	24.682	24.948	-0.012392	1302	58	0.8357362	0.035062134	0.8342168	339.23837	0	14.232269						257	12	2	NaN	NaN	NaN	0.054111	1	9432	9432		45.165	5.7062	1	57203			3976	1267	2357	2395	3123	3123					-0.025228502728623425
EPNPESLEL	9	Unmodified	_EPNPESLEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.4942319634	1	1027.49423	1026.48696	1.4679	0.0015082	0.48631	0.00049968	1.9542	0.0020079	1027.494875684437	24.767	0.21714	24.755	24.682	24.9	-0.012392	252	82	1.4695803	0.04798031	1.4680609	298.26663	0	9.738098						471	10	4	NaN	NaN	NaN	0.010878	1	9433	9433		90.252	42.77	1	90126			3977	1267	2357	2395	3124	3124					-0.025228502728623425
EPPCIIAVL	9	Unmodified	_EPPCIIAVL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.77007127135	2	477.770071	953.52559	2.1086	0.0010074	2.1719	0.0010377	4.2805	0.0020451	477.77156600041405	18.364	0.12004	18.364	18.316	18.436	0	1335	34	0.8154261	0.020323336	0.8154261	331.32904	0	8.257904						98	6	2	NaN	NaN	NaN	0.47587	1	7172	7172		10.605	0	1	9068			3978	910	2358	2396	3125	3125					0.046967838279670104
EPPGCSNK	8	Unmodified	_EPPGCSNK_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.3665290293	1	831.366529	830.359253	1.6409	0.0013642	-8.3193	-0.0069164	-6.6784	-0.0055522	831.360409387481	29.015	0.19311	29.015	28.991	29.184	0	414	49	1.3733286	0.02860105	1.3733286	279.60263	0	5.822998						199	9	3	NaN	NaN	NaN	0.82332	1	5134	5134		6.0903	0	1	20437			3979	2257	2359	2397	3126	3126					-0.06271269347894304
EPPGCSNK	8	Unmodified						0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	831.366529	830.359253	1.0276	0.00085432	-8.2813	-0.0068848	-7.2537	-0.0060305	831.359831917122	29.014	0.16891	29.007	28.982	29.151	-0.0077209	414	61	1.3733286	0.03575504	1.3718091	279.60263		7.279541	-0.0042504	1.5393E-05	-0.00075972	NaN	6.0903	228	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22333			3980	2257	2359	2397							-0.06271269347894304
EPPGLLGA	8	Unmodified	_EPPGLLGA_					0	0	0			REV__ENST00000412204.2_1:143134426-143134471:-|nuORF	REV__ENST00000412204.2_1:143134426-143134471:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4141311489001	1	753.414131	752.406855	1.3852	0.0010436	5.287	0.0039833	6.6722	0.0050269	753.4178390236314	31.114	0.19307	31.109	31.06	31.253	-0.0050716	498	124	1.3232021	0.07358372	1.3216827	269.85098	0	15.006531						429	9	3	NaN	NaN	NaN	0.83849	1	4031	4031		4.0537	0	1	69679	+		3981	12068	2360	2398	3127	3127					0.020747529146206034
EPQAEVTSL	9	Unmodified	_EPQAEVTSL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.4836672771002	1	973.483667	972.476391	1.3975	0.0013604	-2.8184	-0.0027437	-1.4209	-0.0013832	973.4826806209923	20.549	0.096283	20.535	20.487	20.584	-0.014141	333	64	1.4215236	0.037433147	1.4200041	288.72537	0	7.6030273						131	5	3	NaN	NaN	NaN	0.039271	1	7523	7523		51.467	12.549	1	12772			3982	1839	2361	2399	3128	3128					-0.01094832927265088
EPQELLVN	8	Unmodified	_EPQELLVN_					0	0	0		nc|ENSG00000076706|P43121-2|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENSG00000076706|ENST00000264036|MCAM	nc|ENSG00000076706|P43121-2|MCAM	nc|ENSG00000076706|P43121-2|MCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.4938380329	1	941.493838	940.486562	1.9561	0.0018417	-1.6028	-0.001509	0.35337	0.00033269	941.4917671756607	23.103	0.14455	23.103	23.031	23.176	0	294	112	1.4446791	0.065918565	1.4446791	293.56793	0	13.395081						310	7	3	NaN	NaN	NaN	0.75561	1	6829	6829		15.175	1.4383	1	32087			3983	858	2362	2400	3129	3129					0.013937747979525739
EPQGGAAVC	9	Unmodified	_EPQGGAAVC_					0	0	0			REV__nc|ENSG00000138162|O95359-3|TACC2	REV__nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.18690274794994	2	416.186903	830.359253	1.7382	0.00072343	-2.1813	-0.00090781	-0.44301	-0.00018438	416.18558269822637	29.956	0.16895	29.956	29.908	30.077	0	1449	34	0.74507743	0.02040714	0.74507743	303.38184	0	8.309418						96	8	2	NaN	NaN	NaN	0.51184	1	5135	5135		9.1232	0	1	10455	+		3984	9719	2363	2401	3130	3130					-0.06271269347894304
EPQGGAAVC	9	Unmodified						0	0	0			REV__nc|ENSG00000138162|O95359-3|TACC2	REV__nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	416.186903	830.359253	1.7382	0.00072343	-2.1813	-0.00090781	-0.44301	-0.00018438	416.18558269822637	29.956	0.16895	29.956	29.908	30.077	0	1449	34	0.74507743	0.02040714	0.74507743	303.38184		8.309418	0.015718	-0.0007052	0.00075972	NaN	9.1232	96	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10455	+		3985	9719	2363	2401							-0.06271269347894304
EPQKEINSL	9	Unmodified	_EPQKEINSL_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.27984600545	2	529.279846	1056.54514	1.8483	0.00097829	-1.6209	-0.0008579	0.22746	0.00012039	529.2786688441091	15.798	0.35985	15.798	15.702	16.062	0	1293	64	0.84127116	0.038723588	0.84127116	341.3565	0	15.712555						337	16	4	NaN	NaN	NaN	0.059222	1	10944	10944		42.995	17.194	1	68461			3986	140	2364	2402	3131	3131					0.019128313724195323
EPQKEINSL	9	Unmodified	_EPQKEINSL_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.27984600545	2	529.279846	1056.54514	1.7394	0.00092061	-0.43293	-0.00022914	1.3064	0.00069147	529.2798273753368	15.796	0.26344	15.783	15.735	15.999	-0.012611	1293	61	0.84127116	0.036881566	0.8397517	341.3565	0	14.965149						386	12	3	NaN	NaN	NaN	0.028569	1	10718	10718		60.984	24.749	1	75728			3987	140	2364	2402	3132	3132					0.019128313724195323
EPQNEVFP	8	Unmodified	_EPQNEVFP_					0	0	0			REV__ENSG00000186106|ENST00000335659|ANKRD46	REV__ENSG00000186106|ENST00000335659|ANKRD46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.4468878403001	1	959.446888	958.439611	1.6243	0.0015584	0.42674	0.00040944	2.051	0.0019678	959.4480204903688	28.001	0.096502	28.001	27.953	28.05	0	348	55	1.412609	0.03210771	1.412609	286.97342	0	6.5227356						67	5	2	NaN	NaN	NaN	0.75561	1	7288	7288		15.175	1.1338	1	4339.5	+		3988	10991	2365	2403	3133	3133					-0.04127084753190502
EPQNEVFP	8	Unmodified						0	0	0			REV__ENSG00000186106|ENST00000335659|ANKRD46	REV__ENSG00000186106|ENST00000335659|ANKRD46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	959.446888	958.439611	1.6243	0.0015584	0.42674	0.00040944	2.051	0.0019678	959.4480204903688	28.001	0.096502	28.001	27.953	28.05	0	348	55	1.412609	0.03210771	1.412609	286.97342		6.5227356	0.016939	1.4469E-05	0.0025433	NaN	15.175	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4339.5	+		3989	10991	2365	2403							-0.04127084753190502
EPQNEVFP	8	Unmodified						0	0	0			REV__ENSG00000186106|ENST00000335659|ANKRD46	REV__ENSG00000186106|ENST00000335659|ANKRD46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	959.446888	958.439611	1.8549	0.0017797	0.39937	0.00038317	2.2542	0.0021628	959.4480696913329	27.977	0.072405	27.968	27.943	28.016	-0.0089798	354	46	1.4090419	0.026749372	1.4075224	286.24875		5.4341736	-0.016939	-1.1798E-05	-0.0025433	NaN	15.175	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3764.6	+		3990	10991	2365	2403							-0.04127084753190502
EPQPGEARL	9	Unmodified	_EPQPGEARL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.75908077360003	2	498.759081	995.503609	1.7788	0.00088721	-2.61	-0.0013018	-0.83116	-0.00041455	498.7580089854848	15.15	0.21622	15.15	15.101	15.318	0	1347	52	0.8080346	0.03141558	0.8080346	328.1289	0	12.757294						341	10	3	NaN	NaN	NaN	0.097143	1	8410	8410		36.235	6.1994	1	104060			3991	1751	2366	2404	3134	3134					0.005676954037653559
EPQPGEARL	9	Unmodified	_EPQPGEARL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.75908077360003	2	498.759081	995.503609	1.2708	0.0006338	-1.5256	-0.00076093	-0.25488	-0.00012712	498.7585708675811	15.148	0.2401	15.136	15.088	15.328	-0.012201	1347	52	0.8080346	0.03141558	0.8065152	328.12888	0	12.757324						296	11	2	NaN	NaN	NaN	0.015029	1	8240	8240		78.289	30.287	1	114390			3992	1751	2366	2404	3135	3135					0.005676954037653559
EPRGGPAT	8	Unmodified	_EPRGGPAT_					0	0	0		ENST00000583656.5_1_17:56591767-56591965:-|nuORF	ENST00000583656.5_1_17:56591767-56591965:-|nuORF	ENST00000583656.5_1_17:56591767-56591965:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3947926903	1	784.394793	783.387516	1.8415	0.0014445	-6.6408	-0.005209	-4.7993	-0.0037646	784.3899995733892	27.133	0.12069	27.133	27.036	27.157	0	543	34	1.296287	0.019752502	1.296287	264.1748	0	4.0254517						36	6	2	NaN	NaN	NaN	0.81756	1	4544	4544		6.8632	0	1	2201.4			3993	7690	2367	2405	3136	3136					-0.012842033762922256
EPRVLGPAAT	10	Unmodified	_EPRVLGPAAT_					0	0	0			REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.78509855885005	2	505.785099	1009.55564	1.8038	0.00091236	-6.5644	-0.0033202	-4.7606	-0.0024078	506.2836769915001	21.802	0.096283	21.802	21.754	21.85	0	1311	52	0.83019954	0.031388342	0.83019954	337.0657	0	12.743866						100	5	2	NaN	NaN	NaN	0.76534	1	8966	8966		3.5794	0.79424	1	9880.8	+		3994	12866	2368	2406	3137	3137					0.051248588175326404
EPRVLGPAAT	10	Unmodified						0	0	0			REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	505.785099	1009.55564	1.8038	0.00091236	-6.5644	-0.0033202	-4.7606	-0.0024078	506.2836769915001	21.802	0.096283	21.802	21.754	21.85	0	1311	52	0.83019954	0.031388342	0.83019954	337.0657		12.743866	0	0	0	NaN	3.5794	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9880.8	+		3995	12866	2368	2406							0.051248588175326404
EPRWNFWKY	9	Unmodified	_EPRWNFWKY_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3249222111001	2	663.324922	1324.63529	1.4947	0.0009915	3.8404	0.0025474	5.3351	0.0035389	663.3272032198245	23.971	0.07238	23.971	23.971	24.044	0	1098	58	0.960755	0.034805596	0.960755	388.82175	0	14.085968						114	4	3	NaN	NaN	NaN	0.66822	1	19169	19169		1.9246	0.41924	1	8803.9			3996	4310	2369	2407	3138	3138					-0.014040745084912487
EPSAAGAAG	9	Unmodified	_EPSAAGAAG_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3366091094	1	730.336609	729.329333	1.1496	0.00083957	4.3742	0.0031946	5.5237	0.0040342	730.3393227923233	28.749	0.14477	28.74	28.692	28.837	-0.0083504	618	73	1.2513325	0.04323244	1.2498131	255.33855	0	8.821716						166	7	2	NaN	NaN	NaN	0.36492	1	3671	3671		15.175	1.1338	1	18113	+		3997	11083	2370	2408	3139	3139					-0.04615885021576105
EPSAAGAAG	9	Unmodified						0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	730.336609	729.329333	1.3165	0.0009615	4.4116	0.003222	5.7281	0.0041835	730.3402563917535	28.75	0.12066	28.75	28.701	28.822	0	621	58	1.2495319	0.03422022	1.2495319	254.97112		6.9827423	0.0045585	1.2228E-05	-0.00014062	NaN	15.175	153	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15672	+		3998	11083	2370	2408							-0.04615885021576105
EPSAAGAAG	9	Unmodified						0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	730.336609	729.329333	1.1496	0.00083957	4.3742	0.0031946	5.5237	0.0040342	730.3393227923233	28.749	0.14477	28.74	28.692	28.837	-0.0083504	618	73	1.2513325	0.04323244	1.2498131	255.33855		8.821716	-0.0045585	-1.5119E-05	0.00014062	NaN	15.175	166	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18113	+		3999	11083	2370	2408							-0.04615885021576105
EPSADAPAA	9	Unmodified	_EPSADAPAA_					0	0	0		ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B	ITM2B-RB1|3|fusion;ENSG00000136156|ENST00000647800|ITM2B	ITM2B-RB1|3|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.3733885461999	1	828.373389	827.366112	1.2917	0.00107	-1.2874	-0.0010664	0.004338	3.5935E-06	828.3720261931031	14.189	0.26349	14.177	14.082	14.345	-0.011219	561	49	1.2855089	0.028750896	1.2839894	261.73834	0	5.853882						214	12	2	NaN	NaN	NaN	0.094712	1	4988	4988		36.586	5.0254	1	20363			4000	7829;2996	2371	2409	3140	3140					-0.05447633195672097
EPSCNGNETL	10	Unmodified	_EPSCNGNETL_					0	0	0		nc|ENSG00000121274|Q8NDF8-2|TENT4B	nc|ENSG00000121274|Q8NDF8-2|TENT4B	nc|ENSG00000121274|Q8NDF8-2|TENT4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.4360651575	1	1063.43607	1062.42879	1.8717	0.0019904	7.0495	0.0074967	8.9212	0.0094872	1063.4433719538501	27.712	0.26541	27.712	27.567	27.833	0	204	76	1.4979934	0.044346094	1.4979934	303.89697	0	8.996429						364	12	2	NaN	NaN	NaN	0.41241	1	11207	11207		23.086	2.6372	1	41505			4001	7936	2372	2410	3141	3141					-0.0999285518976194
EPSDSYEVL	9	Unmodified	_EPSDSYEVL_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4625974839998	1	1038.4626	1037.45532	1.9957	0.0020724	0.96291	0.00099994	2.9586	0.0030724	1038.4639723307118	23.176	0.096458	23.176	23.128	23.224	0	210	58	1.4944444	0.033724427	1.4944444	303.27057	0	6.84375						125	5	2	NaN	NaN	NaN	0.27442	1	10088	10088		20.555	1.4371	1	9212.3			4002	3997	2373	2411	3142	3142					-0.061908430267976655
EPSDSYEVL	9	Unmodified						0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1038.4626	1037.45532	1.9488	0.0020238	0.80249	0.00083336	2.7513	0.0028571	1038.4647330479982	23.223	0.096518	23.21	23.186	23.283	-0.013294	213	58	1.4926696	0.033713818	1.4911501	302.9104		6.8415833	0.01717	-0.00010366	-0.0016471	NaN	20.555	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5916.5			4003	3997	2373	2411							-0.061908430267976655
EPSEVFINR	9	Unmodified	_EPSEVFINR_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.78001318095	2	545.780013	1089.54547	2.102	0.0011472	-2.6221	-0.0014311	-0.52011	-0.00028387	545.779051275764	18.221	0.23991	18.221	18.173	18.412	0	1257	61	0.86339295	0.03685367	0.86339295	350.19614	0	14.948029						384	11	3	NaN	NaN	NaN	0.070055	1	12374	12374		40.154	23.57	1	53665			4004	2294	2374	2412	3143	3143					0.0042825109228488145
EPSEVFINR	9	Unmodified	_EPSEVFINR_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.78001318095	2	545.780013	1089.54547	2.1092	0.0011512	-0.85931	-0.00046899	1.2499	0.00068219	545.7796265747112	18.242	0.216	18.228	18.156	18.372	-0.01395	1260	58	0.8615505	0.035016656	0.8600311	349.44885	0	14.202911						307	10	3	NaN	NaN	NaN	0.048656	1	12066	12066		47.482	28.318	1	50203			4005	2294	2374	2412	3144	3144					0.0042825109228488145
EPSITAEL	8	Unmodified	_EPSITAEL_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4407398299	1	859.44074	858.433463	2.3203	0.0019942	2.8009	0.0024072	5.1212	0.0044014	859.4412422344124	26.022	0.096539	26.022	25.998	26.094	0	396	70	1.3840506	0.041098595	1.3840506	281.63544	0	8.363007						138	5	2	NaN	NaN	NaN	0.40747	1	5514	5514		36.036	7.3698	1	19195	+		4006	8455	2375	2413	3145	3145					-0.0014160298470642374
EPSITAEL	8	Unmodified						0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	859.44074	858.433463	2.3203	0.0019942	2.8009	0.0024072	5.1212	0.0044014	859.4412422344124	26.022	0.096539	26.022	25.998	26.094	0	396	70	1.3840506	0.041098595	1.3840506	281.63544		8.363007	0.0056709	0.0004614	-0.00013344	NaN	36.036	138	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19195	+		4007	8455	2375	2413							-0.0014160298470642374
EPSKGASPEL	10	Unmodified	_EPSKGASPEL_					0	0	0		ENST00000522492.1_1_5:148651531-148685943:+|nuORF;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF;nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1	ENST00000522492.1_1_5:148651531-148685943:+|nuORF	ENST00000522492.1_1_5:148651531-148685943:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.75874642260004	2	507.758746	1013.50294	1.0945	0.00055572	-0.18977	-9.6356E-05	0.90468	0.00045936	507.75888010753425	13.637	0.19177	13.627	13.555	13.747	-0.010098	1272	55	0.854179	0.033189833	0.8526596	346.78333	0	13.474548						170	9	3	NaN	NaN	NaN	0.050502	1	8942	8942		52.78	4.1294	1	23352			4008	3958	2376	2414	3146	3146					-0.003271440359412736
EPSPDFPAL	9	Unmodified	_EPSPDFPAL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.4672889314	1	972.467289	971.460012	1.6515	0.001606	1.0971	0.0010669	2.7485	0.0026729	972.467869288448	27.374	0.16899	27.374	27.302	27.471	0	333	82	1.4215236	0.04809761	1.4215236	288.72958	0	9.769257						276	8	3	NaN	NaN	NaN	0.012648	1	7646	7646		84.879	48.292	1	24488			4009	1555	2377	2415	3147	3147					-0.026859140933765957
EPSPDFPAL	9	Unmodified	_EPSPDFPAL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.4672889314	1	972.467289	971.460012	1.1614	0.0011294	0.80648	0.00078428	1.9679	0.0019137	972.4681950509498	27.373	0.16894	27.363	27.291	27.46	-0.010126	330	73	1.4233059	0.042755723	1.4217864	289.0916	0	8.684235						230	8	2	NaN	NaN	NaN	0.018156	1	7501	7501		74.332	41.554	1	22180			4010	1555	2377	2415	3148	3148					-0.026859140933765957
EPSPQAGHP	9	Unmodified	_EPSPQAGHP_					0	0	0			REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2170487834	2	460.217049	918.419545	0.92069	0.00042372	0.30284	0.00013937	1.2235	0.00056309	460.2173653350078	14.933	0.096095	14.933	14.909	15.005	0	1374	31	0.791392	0.018498778	0.791392	321.738	0	7.52063						62	5	2	NaN	NaN	NaN	0.55027	1	6382	6382		7.5404	0	1	4973	+		4011	11493	2378	2416	3149	3149					-0.04292835693138386
EPSSEPTLS	9	Unmodified	_EPSSEPTLS_					0	0	0			REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4363827335002	1	946.436383	945.429106	2.0726	0.0019616	0.89574	0.00084776	2.9684	0.0028094	946.4369299483648	18.002	0.11992	17.988	17.916	18.036	-0.013786	384	76	1.3911947	0.044658184	1.3896753	282.6782	0	9.074127						152	6	2	NaN	NaN	NaN	0.062072	1	6811	6811		41.785	5.198	1	12498	+		4012	10204	2379	2417	3150	3150					-0.04579112198257462
EPSYPDLVI	9	Unmodified	_EPSYPDLVI_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5248038102998	1	1032.5248	1031.51753	1.5751	0.0016263	0.63159	0.00065213	2.2067	0.0022784	1032.5247502204302	27.639	0.072367	27.639	27.591	27.664	0	192	58	1.5050892	0.03370297	1.5050892	305.4538	0	6.8399353						85	4	2	NaN	NaN	NaN	0.27442	1	9846	9846		20.555	1.4371	1	8054.9			4013	4847	2380	2418	3151	3151					0.0030292811218259885
EPSYPDLVI	9	Unmodified						0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.5248	1031.51753	1.2113	0.0012507	2.8269	0.0029189	4.0382	0.0041695	1032.5277353174354	27.639	0.096497	27.629	27.605	27.702	-0.009552	189	52	1.5068626	0.030152082	1.5053432	305.8137		6.119293	-0.0051778	0.0007609	0.00012701	NaN	20.555	116	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8454.8			4014	4847	2380	2418							0.0030292811218259885
EPTDVVDKL	9	Unmodified	_EPTDVVDKL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.26894696815003	2	508.268947	1014.52334	1.5901	0.00080818	-0.4176	-0.00021225	1.1725	0.00059593	508.2691827432775	20.357	0.12015	20.357	20.333	20.453	0	1278	94	0.85049206	0.057194293	0.85049206	345.28183	0	23.219666						193	6	3	NaN	NaN	NaN	0.13999	1	9151	9151		30.035	13.451	1	20706			4015	749	2381	2419	3152	3152					0.01666026623865946
EPTDVVDKL	9	Unmodified	_EPTDVVDKL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.26894696815003	2	508.268947	1014.52334	1.1818	0.00060069	-0.34547	-0.00017559	0.83636	0.0004251	508.2690502402032	20.381	0.14453	20.367	20.271	20.415	-0.014141	1275	100	0.85233563	0.060890853	0.8508162	346.0303	0	24.720398						135	7	2	NaN	NaN	NaN	0.27507	1	8977	8977		20.513	5.0506	1	16657			4016	749	2381	2419	3153	3153					0.01666026623865946
EPTEAYEVL	9	Unmodified	_EPTEAYEVL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.4989829903	1	1050.49898	1049.49171	1.9716	0.0020712	1.9753	0.0020751	3.9469	0.0041462	1050.498544203812	24.454	0.21703	24.454	24.357	24.574	0	201	118	1.4997677	0.06915057	1.4997677	304.305	0	14.030731						483	10	3	NaN	NaN	NaN	0.016254	1	10602	10602		76.739	6.1394	1	64669			4017	5238	2382	2420	3154	3154					-0.03105966130078741
EPVEIEVEI	9	Unmodified	_EPVEIEVEI_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5459331829	1	1056.54593	1055.53866	2.2686	0.0023969	-0.91905	-0.00097102	1.3496	0.0014259	1056.544853734359	28.556	0.19305	28.556	28.508	28.701	0	210	166	1.4944444	0.09750974	1.4944444	303.2024	0	19.783386						772	9	4	NaN	NaN	NaN	0.0072287	1	10894	10894		98.041	30.887	1	123250			4018	4832	2383	2421	3155	3155					0.013108934210549705
EPVEIEVEI	9	Unmodified	_EPVEIEVEI_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.77660482475	2	528.776605	1055.53866	1.2582	0.00066531	-3.4331	-0.0018153	-2.1749	-0.00115	528.7748294222329	28.556	0.072393	28.547	28.523	28.596	-0.0083504	1275	37	0.85233563	0.022121787	0.8508162	345.8503	0	8.976318						62	4	3	NaN	NaN	NaN	0.20577	1	10664	10664		24.961	1.6266	1	4591.6			4019	4832	2383	2421	3156	3156					0.013108934210549705
EPVEIEVEI	9	Unmodified	_EPVEIEVEI_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5459331829	1	1056.54593	1055.53866	1.5388	0.0016258	-1.1348	-0.0011989	0.40402	0.00042687	1056.544683249214	28.556	0.19301	28.547	28.499	28.692	-0.0083504	210	148	1.4944444	0.08684468	1.4929249	303.2024	0	17.619598						719	9	4	NaN	NaN	NaN	1.2958E-07	1	10667	10667		136.74	20.004	1	107960			4020	4832	2383	2421	3157	3157					0.013108934210549705
EPVEIEVEI	9	Unmodified	_EPVEIEVEI_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.77660482475	2	528.776605	1055.53866	1.1208	0.00059264	4.5576	0.0024099	5.6783	0.0030026	528.7783352653131	28.628	0.072374	28.62	28.596	28.668	-0.0083504	1278	49	0.85049206	0.029498875	0.8489726	345.1022	0	11.969696						67	4	2	NaN	NaN	NaN	0.14301	1	10671	10671		29.598	6.2639	1	5864.6			4021	4832	2383	2421	3158	3158					0.013108934210549705
EPVEIEVEI	9	Unmodified						0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.776605	1055.53866	1.6592	0.00087736	-0.092914	-4.9131E-05	1.5663	0.00082823	528.7769288905055	28.556	0.072409	28.556	28.532	28.605	0	1272	37	0.854179	0.022124112	0.854179	346.59827		8.977264	0.0045432	0.0019341	0.0016814	NaN	24.961	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4616.5			4022	4832	2383	2421							0.013108934210549705
EPVEIEVEI	9	Unmodified						0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.54593	1055.53866	1.3725	0.0014501	-2.5518	-0.0026961	-1.1793	-0.001246	1056.5437652099981	28.314	0.21719	28.305	28.209	28.426	-0.0089779	144	100	1.533442	0.05841279	1.5319226	311.11447		11.851135	-0.12551	-0.0012907	0.018739	NaN	98.041	344	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47381			4023	4832	2383	2421							0.013108934210549705
EPVGVIILV	9	Unmodified	_EPVGVIILV_					0	0	0		nc|ENSG00000198324|Q8N4B1-3|PHETA1	nc|ENSG00000198324|Q8N4B1-3|PHETA1	nc|ENSG00000198324|Q8N4B1-3|PHETA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.5920955145002	1	938.592096	937.584819	1.1735	0.0011014	-0.52444	-0.00049224	0.64902	0.00060916	938.5919405520792	33.72	0.12068	33.718	33.67	33.79	-0.0018463	264	67	1.4624695	0.039117813	1.46095	297.1963	0	7.949341						179	6	3	NaN	NaN	NaN	0.17818	1	6638	6638		26.732	1.7706	1	16727			4024	8011	2384	2422	3159	3159					0.11353003113811155
EPVIVNIVN	9	Unmodified	_EPVIVNIVN_					0	0	0			REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5724227049001	1	996.572423	995.565146	1.0236	0.0010201	1.716	0.0017101	2.7396	0.0027302	996.5737700706065	35.144	0.096554	35.144	35.096	35.192	0	162	46	1.5228153	0.026570916	1.5228153	309.1985	0	5.3950806						84	5	2	NaN	NaN	NaN	0.62619	1	8426	8426		4.4131	1.2597	1	7252.5	+		4025	10242	2385	2423	3160	3160					0.06718627103043673
EPVIVNIVN	9	Unmodified						0	0	0			REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.572423	995.565146	1.0236	0.0010201	1.716	0.0017101	2.7396	0.0027302	996.5737700706065	35.144	0.096554	35.144	35.096	35.192	0	162	46	1.5228153	0.026570916	1.5228153	309.1985		5.3950806	0.012812	-0.00040444	-0.00012607	NaN	4.4131	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7252.5	+		4026	10242	2385	2423							0.06718627103043673
EPVIVNIVN	9	Unmodified						0	0	0			REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	REV__ENST00000476718.1_1_1:1289695-1290347:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.572423	995.565146	1.4168	0.001412	2.7472	0.0027378	4.164	0.0041497	996.5736801836349	35.119	0.072376	35.119	35.094	35.167	-4.5776E-05	159	49	1.5245869	0.028340816	1.5230675	309.5582		5.754425	-0.012812	0.00062324	0.00012607	NaN	4.4131	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7964.6	+		4027	10242	2385	2423							0.06718627103043673
EPVQLTFAL	9	Unmodified	_EPVQLTFAL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.28440006709997	2	509.2844	1016.55425	1.1138	0.00056725	-2.0347	-0.0010363	-0.92091	-0.000469	509.28388569635047	31.67	0.096558	31.67	31.646	31.742	0	1290	43	0.84311575	0.02582264	0.84311575	342.27808	0	10.483185						121	5	3	NaN	NaN	NaN	0.27608	1	9244	9244		20.449	2.6497	1	14376			4028	2783	2386	2424	3161	3161					0.04663224728756177
EPVQLTFAL	9	Unmodified	_EPVQLTFAL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5615236676	1	1017.56152	1016.55425	1.6501	0.001679	-1.8281	-0.0018602	-0.17799	-0.00018112	1017.5614435423731	31.694	0.1207	31.694	31.646	31.766	0	189	67	1.5068626	0.039010048	1.5068626	305.8731	0	7.918518						140	6	2	NaN	NaN	NaN	0.084037	1	9245	9245		38.131	16.296	1	14889			4029	2783	2386	2424	3162	3162					0.04663224728756177
EPVQLTFAL	9	Unmodified	_EPVQLTFAL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.28440006709997	2	509.2844	1016.55425	0.37287	0.0001899	-1.2953	-0.0006597	-0.92248	-0.0004698	509.283771597236	31.669	0.072372	31.664	31.64	31.712	-0.0044155	1290	43	0.84311575	0.025819898	0.8415963	342.27808	0	10.482056						115	4	3	NaN	NaN	NaN	0.19268	1	9067	9067		25.801	3.966	1	15150			4030	2783	2386	2424	3163	3163					0.04663224728756177
EPVQYYFTL	9	Unmodified	_EPVQYYFTL_					0	0	0		ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1159.567002976	1	1159.567	1158.55973	2.0002	0.0023194	0.51999	0.00060296	2.5202	0.0029223	1159.5671658093358	31.139	0.14478	31.139	31.091	31.235	0	75	70	1.5741152	0.040617228	1.5741152	318.99985	0	8.231232						266	7	3	NaN	NaN	NaN	0.011447	1	15093	15093		108.71	62.885	1	35513			4031	699	2387	2425	3164	3164					-0.013210964794325264
EPVQYYFTL	9	Unmodified	_EPVQYYFTL_					0	0	0		ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	ENST00000424419.6_1_1:41157373-41232429:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1159.567002976	1	1159.567	1158.55973	1.8417	0.0021356	-0.66903	-0.00077579	1.1727	0.0013598	1159.5667106014635	31.114	0.14478	31.109	31.084	31.229	-0.0050716	72	79	1.5758814	0.0459224	1.5743619	319.35776	0	9.306335						306	7	3	NaN	NaN	NaN	0.027734	1	14588	14588		77.761	46.085	1	35754			4032	699	2387	2425	3165	3165					-0.013210964794325264
EPVSYRGVS	9	Unmodified	_EPVSYRGVS_					0	0	0			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.25363125495005	2	497.253631	992.49271	1.5269	0.00075927	-7.4652	-0.0037121	-5.9383	-0.0029528	497.2499644272997	21.055	0.072216	21.055	21.031	21.103	0	1317	34	0.8265074	0.020307899	0.8265074	335.64426	0	8.24704						41	4	2	NaN	NaN	NaN	0.53317	1	8310	8310		8.2448	0.70444	1	3847.8	+		4033	9141	2388	2426	3166	3166					-0.0038370697051277602
EPVTYFITF	9	Unmodified	_EPVTYFITF_					0	0	0		ENSG00000005059|ENST00000394650|MCUB;ENST00000494604.1_1_4:110605598-110605826:+|nuORF	ENSG00000005059|ENST00000394650|MCUB	ENSG00000005059|ENST00000394650|MCUB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7842328916	2	558.784233	1115.55391	0.56592	0.00031623	-1.1819	-0.00066041	-0.61594	-0.00034418	558.7839692923503	33.599	0.14481	33.597	33.476	33.621	-0.0018501	1215	58	0.8891654	0.034959912	0.88764596	360.54456	0	14.175781						145	7	2	NaN	NaN	NaN	0.41766	1	13106	13106		13.003	0	1	17195			4034	319	2389	2427	3167	3167					0.0007580500889616815
EPVWKEVI	8	Unmodified	_EPVWKEVI_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.27911772395004	2	500.279118	998.543683	2.0614	0.0010313	-6.5289	-0.0032663	-4.4675	-0.002235	500.2753544740084	18.82	0.072044	18.82	18.796	18.868	0	1311	34	0.83019954	0.020303547	0.83019954	337.1157	0	8.244568						79	4	3	NaN	NaN	NaN	0.73961	1	8532	8532		16.584	2.5426	1	7184.2			4035	2065	2390	2428	3168	3168					0.04435242074339385
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7895152347501	2	531.789515	1061.56448	1.5584	0.00082876	-3.5717	-0.0018994	-2.0132	-0.0010706	531.787351707764	32.152	0.12064	32.152	32.104	32.225	0	1284	100	0.8468043	0.060792148	0.8468043	343.58075	0	24.66568						373	6	5	NaN	NaN	NaN	0.030391	1	11188	11188		58.599	22.563	1	97736			4036	4259	2391	2429	3169	3169					0.03615787663329684
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5717540029	1	1062.57175	1061.56448	1.8056	0.0019186	-0.73745	-0.0007836	1.0681	0.001135	1062.570887913269	32.152	0.14479	32.152	32.08	32.225	0	111	136	1.5529068	0.07962012	1.5529068	315.04053	0	16.152649						503	7	4	NaN	NaN	NaN	0.00020136	1	11192	11192		116.74	36.097	1	207470			4037	4259	2391	2429	3170	3170					0.03615787663329684
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7895152347501	2	531.789515	1061.56448	0.46884	0.00024932	-1.8135	-0.0009644	-1.3447	-0.00071508	531.7885410616223	32.151	0.12066	32.148	32.075	32.196	-0.0037613	1284	103	0.8468043	0.06263095	0.8452849	343.58075	0	25.411743						314	6	4	NaN	NaN	NaN	0.023074	1	10934	10934		68.108	23.806	1	109020			4038	4259	2391	2429	3171	3171					0.03615787663329684
EPVYIDLTL	9	Unmodified	_EPVYIDLTL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5717540029	1	1062.57175	1061.56448	1.1702	0.0012434	-1.2248	-0.0013014	-0.054587	-5.8003E-05	1062.5705610676869	32.151	0.16891	32.148	32.075	32.244	-0.0037613	108	133	1.5546752	0.07784665	1.5531558	315.3993	0	15.792847						510	8	4	NaN	NaN	NaN	0.028349	1	10935	10935		61.271	14.135	1	209590			4039	4259	2391	2429	3172	3172					0.03615787663329684
EPWPENATL	9	Unmodified	_EPWPENATL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.4996516923	1	1056.49965	1055.49238	2.1257	0.0022458	-1.1848	-0.0012518	0.94086	0.00099402	1056.49783992043	25.515	0.12066	25.503	25.431	25.552	-0.0116	195	52	1.5033154	0.030152082	1.501796	305.00238	0	6.117462						144	6	2	NaN	NaN	NaN	0.089764	1	10642	10642		37.302	9.5135	1	14227			4040	2577	2392	2430	3173	3173					-0.03315126690381476
EPWPENATL	9	Unmodified						0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1056.49965	1055.49238	2.392	0.0025272	-1.5739	-0.0016628	0.81814	0.00086436	1056.497953084597	25.539	0.14472	25.539	25.515	25.66	0	192	58	1.5050892	0.033699393	1.5050892	305.36224		6.837158	0.018009	-0.00022313	0.0016465	NaN	37.302	133	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12675			4041	2577	2392	2430							-0.03315126690381476
EPYITNIPQE	10	Unmodified	_EPYITNIPQE_					0	0	0			REV__nc|ENSG00000018236|Q12860-2|CNTN1	REV__nc|ENSG00000018236|Q12860-2|CNTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.2982357238501	2	602.298236	1202.58192	0.87508	0.00052706	5.9508	0.0035841	6.8259	0.0041112	602.8019649462398	30.993	0.14485	30.988	30.94	31.084	-0.0050716	1167	61	0.91857195	0.036726475	0.9170525	372.1393	0	14.878937						118	7	2	NaN	NaN	NaN	0.57785	1	15894	15894		16.226	0.76316	1	10868			4042	8423	2393	2431	3174	3174					-0.011269168016497133
EPYWIPLIV	9	Unmodified	_EPYWIPLIV_					0	0	0			REV__nc|ENSG00000100678|P57103-3|SLC8A3	REV__nc|ENSG00000100678|P57103-3|SLC8A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.6292093023	1	1129.62921	1128.62193	1.3081	0.0014777	1.0422	0.0011773	2.3503	0.002655	1129.630922512069	36.396	0.19265	36.398	36.326	36.519	0.0016785	57	91	1.5847093	0.052987337	1.5831898	321.24713	0	10.741425						322	9	3	NaN	NaN	NaN	0.056143	1	13600	13600		44.302	2.5178	1	39232	+		4043	8827	2394	2432	3175	3175					0.0627667465957984
EQAASGGR	8	Unmodified	_EQAASGGR_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.3693062213001	1	775.369306	774.36203	1.2518	0.00097063	-4.8335	-0.0037477	-3.5816	-0.0027771	775.3649919129017	30.607	0.21712	30.601	30.553	30.77	-0.0057545	513	49	1.3142352	0.028704882	1.3127158	267.88626	0	5.8510437						198	10	3	NaN	NaN	NaN	0.83582	1	4341	4341		4.4131	0.3594	1	24437	+		4044	13094	2395	2433	3176	3176					-0.03417677898710281
EQAIEQFI	8	Unmodified	_EQAIEQFI_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4938380329	1	977.493838	976.486562	1.0409	0.0010175	3.7255	0.0036416	4.7664	0.0046591	977.4988643132566	35.456	0.19283	35.457	35.361	35.553	0.00053024	249	76	1.4713576	0.044416666	1.4698381	298.83	0	9.020966						246	9	3	NaN	NaN	NaN	0.47456	1	7635	7635		32.453	0	1	21604	+		4045	9807	2396	2434	3177	3177					-0.002622252020501037
EQAPEQASL	9	Unmodified	_EQAPEQASL_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.73527132629994	2	486.735271	971.45599	1.9256	0.00093728	-5.2588	-0.0025596	-3.3332	-0.0016224	486.73409891608577	16.638	0.14398	16.638	16.566	16.71	0	1356	37	0.8024889	0.022186518	0.8024889	325.98682	0	9.012573						92	7	2	NaN	NaN	NaN	0.40649	1	7643	7643		13.463	2.8581	1	6605.6	+		4046	11334	2397	2435	3178	3178					-0.030880035871064138
EQAPEQASL	9	Unmodified	_EQAPEQASL_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.73527132629994	2	486.735271	971.45599	1.8933	0.00092156	-0.13128	-6.3899E-05	1.7621	0.00085766	486.7352548053351	16.634	0.1439	16.621	16.573	16.717	-0.013294	1356	46	0.8024889	0.027725577	0.8009695	325.9868	0	11.262695						120	7	2	NaN	NaN	NaN	0.12328	1	7499	7499		32.453	3.5572	1	10752	+		4047	11334	2397	2435	3179	3179					-0.030880035871064138
EQAPEQASL	9	Unmodified						0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.735271	971.45599	1.9256	0.00093728	-5.2588	-0.0025596	-3.3332	-0.0016224	486.73409891608577	16.638	0.14398	16.638	16.566	16.71	0	1356	37	0.8024889	0.022186518	0.8024889	325.98682		9.012573	0.0081899	-0.0038058	0.00075972	NaN	32.453	92	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6605.6	+		4048	11334	2397	2435							-0.030880035871064138
EQAPEQASL	9	Unmodified						0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.735271	971.45599	1.8933	0.00092156	-0.13128	-6.3899E-05	1.7621	0.00085766	486.7352548053351	16.634	0.1439	16.621	16.573	16.717	-0.013294	1356	46	0.8024889	0.027725577	0.8009695	325.9868		11.262695	-0.0081899	0.0011857	-0.00075972	NaN	32.453	120	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10752	+		4049	11334	2397	2435							-0.030880035871064138
EQAYRHPVCSL	11	Unmodified	_EQAYRHPVCSL_					0	0	0			REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8166040400001	2	651.816604	1301.61866	1.926	0.0012554	0.46738	0.00030465	2.3934	0.0015601	651.8170389789319	25.756	0.072388	25.745	25.721	25.793	-0.0116	1074	37	0.9754029	0.02196467	0.97388345	394.82187	0	8.890808						75	4	3	NaN	NaN	NaN	0.72342	1	17974	17974		5.9198	0.22562	1	6299.3	+		4050	9842	2398	2436	3180	3180					-0.020089434567353237
EQCEKVVENI	10	Unmodified	_EQCEKVVENI_					0	0	0			REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1190.5721647084001	1	1190.57216	1189.56489	3.2958	0.0039238	4.8116	0.0057286	8.1074	0.0096524	1190.5773541321262	18.508	0.095936	18.508	18.484	18.58	0	72	49	1.5758814	0.028259993	1.5758814	319.25964	0	5.725189						123	5	3	NaN	NaN	NaN	0.65442	1	16137	16137		11.17	0.81017	1	9001.6	+		4051	9530	2399	2437	3181	3181					-0.02231160679093591
EQCEKVVENI	10	Unmodified						0	0	0			REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1190.57216	1189.56489	3.2958	0.0039238	4.8116	0.0057286	8.1074	0.0096524	1190.5773541321262	18.508	0.095936	18.508	18.484	18.58	0	72	49	1.5758814	0.028259993	1.5758814	319.25964		5.725189	-0.0036552	0.00087028	0.00075972	NaN	11.17	123	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9001.6	+		4052	9530	2399	2437							-0.02231160679093591
EQCEKVVENI	10	Unmodified						0	0	0			REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1190.57216	1189.56489	2.5574	0.0030447	3.3047	0.0039345	5.8621	0.0069792	1190.5754472742371	18.53	0.095936	18.516	18.492	18.588	-0.01395	72	49	1.5758814	0.028259993	1.5743619	319.25964		5.725189	0.0036552	-0.00092383	-0.00075972	NaN	11.17	125	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9151	+		4053	9530	2399	2437							-0.02231160679093591
EQEKAELF	8	Unmodified	_EQEKAELF_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4887526550001	1	993.488753	992.481476	1.5383	0.0015283	-0.26777	-0.00026603	1.2706	0.0012623	993.489041446661	24.815	0.12063	24.803	24.779	24.9	-0.012394	219	64	1.4891195	0.037282348	1.4876001	302.36957	0	7.5702515						204	6	3	NaN	NaN	NaN	0.23625	1	8142	8142		47.136	2.8334	1	30395			4054	4477	2400	2438	3182	3182					-0.015065290646589347
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.29242206445	2	595.292422	1188.57029	1.3863	0.00082523	-0.93299	-0.0005554	0.45328	0.00026983	595.2913951455367	34.517	0.16891	34.517	34.469	34.638	0	1224	88	0.883646	0.05330801	0.883646	358.03772	0	21.599487						294	8	2	NaN	NaN	NaN	0.11656	1	16110	16110		33.425	22.255	1	35472			4055	3002	2401	2439	3183	3183					-0.016451138250204167
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.29242206445	2	595.292422	1188.57029	0.81165	0.00048317	0.73128	0.00043533	1.5429	0.0009185	595.7947821411725	34.516	0.19292	34.515	34.467	34.66	-0.0006485	1218	97	0.8873258	0.058819473	0.8858064	359.52872	0	23.832611						310	9	2	NaN	NaN	NaN	0.026443	1	15496	15496		63.765	36.469	1	34303			4056	3002	2401	2439	3184	3184					-0.016451138250204167
EQELTPSPPWW	11	Unmodified	_EQELTPSPPWW_					0	0	0		ENST00000468834.1_1_10:33346877-33346970:-|nuORF	ENST00000468834.1_1_10:33346877-33346970:-|nuORF	ENST00000468834.1_1_10:33346877-33346970:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.32478482535	2	685.324785	1368.63502	1.2994	0.00089054	-0.46462	-0.00031842	0.83482	0.00057212	685.3233324288335	31.741	0.072458	31.737	31.712	31.785	-0.0044155	1080	49	0.9717421	0.029283106	0.97022265	393.13773	0	11.847046						58	4	2	NaN	NaN	NaN	0.77378	1	18859	18859		1.3312	0	1	4065.2			4057	7133	2402	2440	3185	3185					-0.0345553901902349
EQEPEPQRSKC	11	Unmodified	_EQEPEPQRSKC_					0	0	0			REV__ENSG00000168878|ENST00000519937|SFTPB	REV__ENSG00000168878|ENST00000519937|SFTPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.8064332842	2	665.806433	1329.59831	1.6296	0.001085	-0.9903	-0.00065935	0.63933	0.00042567	665.8051373424065	21.055	0.1204	21.041	20.993	21.113	-0.014086	1131	40	0.94059354	0.02384001	0.93907416	380.64767	0	9.647797						80	6	2	NaN	NaN	NaN	0.76654	1	18387	18387		2.5994	0	1	6846.5	+		4058	10525	2403	2441	3186	3186					-0.05330158907213445
EQEPEPQRSKC	11	Unmodified						0	0	0			REV__ENSG00000168878|ENST00000519937|SFTPB	REV__ENSG00000168878|ENST00000519937|SFTPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	665.806433	1329.59831	1.518	0.0010107	-1.4854	-0.00098896	0.032656	2.1742E-05	665.8048001857953	21.031	0.048145	21.031	21.007	21.055	0	1125	49	0.9442611	0.029333651	0.9442611	382.13187		11.871002	-0.0051301	-0.00033683	0.0025935	NaN	2.5994	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4565.7	+		4059	10525	2403	2441							-0.05330158907213445
EQEPEPQRSKC	11	Unmodified						0	0	0			REV__ENSG00000168878|ENST00000519937|SFTPB	REV__ENSG00000168878|ENST00000519937|SFTPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	665.806433	1329.59831	1.6296	0.001085	-0.9903	-0.00065935	0.63933	0.00042567	665.8051373424065	21.055	0.1204	21.041	20.993	21.113	-0.014086	1131	40	0.94059354	0.02384001	0.93907416	380.64767		9.647797	0.0051301	0.00032239	-0.0025935	NaN	2.5994	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6846.5	+		4060	10525	2403	2441							-0.05330158907213445
EQFSYMREL	9	Unmodified	_EQFSYMREL_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.7791559012002	2	601.779156	1201.54376	2.0037	0.0012058	1.8418	0.0011083	3.8455	0.0023141	601.78102492647	18.316	0.19197	18.316	18.316	18.508	0	1188	61	0.90571284	0.036746264	0.90571284	366.93335	0	14.8871155						249	9	4	NaN	NaN	NaN	0.49999	1	16514	16514		6.8632	0	1	39870			4061	1500	2404	2442	3187	3187					-0.04895125987945903
EQGFAFVC	8	Unmodified	_EQGFAFVC_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.3920154983	1	900.392015	899.384739	2.3569	0.0021221	-4.784	-0.0043075	-2.4271	-0.0021853	900.3874429412082	25.877	0.19309	25.865	25.841	26.034	-0.0116	378	49	1.3947657	0.028564572	1.3932463	283.61206	0	5.808319						147	9	2	NaN	NaN	NaN	0.50567	1	5932	5932		30.791	5.8301	1	12851	+		4062	9370	2405	2443	3188	3188					-0.06897794825465553
EQGFAFVC	8	Unmodified						0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.392015	899.384739	2.3569	0.0021221	-4.784	-0.0043075	-2.4271	-0.0021853	900.3874429412082	25.877	0.19309	25.865	25.841	26.034	-0.0116	378	49	1.3947657	0.028564572	1.3932463	283.61206		5.808319	-0.0059265	-0.00044914	-0.00075972	NaN	30.791	147	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12851	+		4063	9370	2405	2443							-0.06897794825465553
EQHGGWAA	8	Unmodified	_EQHGGWAA_					0	0	0			REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.3743915992	1	855.374392	854.367115	1.896	0.0016218	-5.39	-0.0046105	-3.494	-0.0029887	855.3696222199866	34.589	0.21705	34.589	34.541	34.758	0	411	67	1.3751161	0.0393306	1.3751161	279.83844	0	8.003845						309	10	3	NaN	NaN	NaN	0.80692	1	5453	5453		8.2903	0	1	40110	+		4064	12377	2406	2444	3189	3189					-0.065893740361048
EQHGGWAA	8	Unmodified						0	0	0			REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	855.374392	854.367115	1.896	0.0016218	-5.39	-0.0046105	-3.494	-0.0029887	855.3696222199866	34.589	0.21705	34.589	34.541	34.758	0	411	67	1.3751161	0.0393306	1.3751161	279.83844		8.003845	0.00098229	-0.0004456	0.00075972	NaN	8.2903	309	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40110	+		4065	12377	2406	2444							-0.065893740361048
EQHGGWAA	8	Unmodified						0	0	0			REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	855.374392	854.367115	1.061	0.00090754	-4.2744	-0.0036562	-3.2134	-0.0027486	855.370672300189	34.588	0.21695	34.587	34.539	34.756	-0.0006485	411	70	1.3751161	0.041116238	1.3735967	279.8384		8.367218	-0.00098229	0.00050869	-0.00075972	NaN	8.2903	276	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38302	+		4066	12377	2406	2444							-0.065893740361048
EQHYPGPPS	9	Unmodified	_EQHYPGPPS_					0	0	0			REV__ENSG00000111725|ENST00000229328|PRKAB1	REV__ENSG00000111725|ENST00000229328|PRKAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.23015615865	2	506.230156	1010.44576	1.3976	0.00070749	-9.64	-0.0048801	-8.2424	-0.0041726	506.727098708881	24.888	0.096521	24.875	24.851	24.948	-0.012394	1317	43	0.8265074	0.025850594	0.82498795	335.5627	0	10.495392						95	5	3	NaN	NaN	NaN	0.58159	1	8811	8811		6.2502	0.55606	1	7419.4	+		4067	9105	2407	2445	3190	3190					-0.059045665216672205
EQIDLLAAR	9	Unmodified	_EQIDLLAAR_					0	0	0		MISP|p.F193L|1|1.0|ENSG00000099812|chr19:757525-757525|C/A|missense_variant	MISP|p.F193L|1|1.0|ENSG00000099812|chr19:757525-757525|C/A|missense_variant	MISP|p.F193L|1|1.0|ENSG00000099812|chr19:757525-757525|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5734853374	1	1028.57349	1027.56621	1.162	0.0011952	2.3403	0.0024072	3.5023	0.0036024	1028.5754111633635	30.004	0.096516	29.997	29.949	30.045	-0.0064106	111	79	1.5529068	0.046010017	1.5513873	315.17422	0	9.338074						117	5	2	NaN	NaN	NaN	0.59509	1	9498	9498		5.6942	0	1	10440			4068	7882	2408	2446	3191	3191					0.05352841471949432
EQIEGLDII	9	Unmodified	_EQIEGLDII_					0	0	0			REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.27677200025	2	515.276772	1028.53899	1.1124	0.00057321	-3.0838	-0.001589	-1.9714	-0.0010158	515.27498825364	33.721	0.12066	33.721	33.673	33.793	0	1254	55	0.8652351	0.033171892	0.8652351	351.20316	0	13.46463						98	6	2	NaN	NaN	NaN	0.18779	1	9718	9718		26.115	9.5308	1	9749.2	+		4069	13286	2409	2447	3192	3192					0.02586313140909624
EQIEGLDII	9	Unmodified	_EQIEGLDII_					0	0	0			REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5462675339	1	1029.54627	1028.53899	0.6641	0.00068372	-0.22923	-0.000236	0.43487	0.00044772	1029.5464413254758	33.72	0.14482	33.718	33.67	33.814	-0.0018463	123	76	1.5458313	0.044233322	1.5443119	313.73428	0	8.977386						203	7	3	NaN	NaN	NaN	0.021751	1	9521	9521		69.782	19.467	1	27013	+		4070	13286	2409	2447	3193	3193					0.02586313140909624
EQIEGLDII	9	Unmodified	_EQIEGLDII_					0	0	0			REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.27677200025	2	515.276772	1028.53899	0.66414	0.00034222	0.39249	0.00020224	1.0566	0.00054446	515.2766324884448	33.695	0.096527	33.694	33.67	33.766	-0.0018501	1257	46	0.86339295	0.027635753	0.8618735	350.45538	0	11.217499						105	5	3	NaN	NaN	NaN	0.46215	1	9522	9522		11.17	0.81017	1	8875.9	+		4071	13286	2409	2447	3194	3194					0.02586313140909624
EQIEGLDII	9	Unmodified						0	0	0			REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.276772	1028.53899	1.1124	0.00057321	-3.0838	-0.001589	-1.9714	-0.0010158	515.27498825364	33.721	0.12066	33.721	33.673	33.793	0	1254	55	0.8652351	0.033171892	0.8652351	351.20316		13.46463	0.013623	-0.0024668	0.0016808	NaN	26.115	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9749.2	+		4072	13286	2409	2447							0.02586313140909624
EQIEGLDII	9	Unmodified						0	0	0			REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	REV__OTOA|p.R146Q|1|0.37|ENSG00000155719|chr16:21687450-21687450|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.276772	1028.53899	0.66414	0.00034222	0.39249	0.00020224	1.0566	0.00054446	515.2766324884448	33.695	0.096527	33.694	33.67	33.766	-0.0018501	1257	46	0.86339295	0.027635753	0.8618735	350.45538		11.217499	-0.013623	0.0011157	-0.0016808	NaN	26.115	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8875.9	+		4073	13286	2409	2447							0.02586313140909624
EQIPFYAQF	9	Unmodified	_EQIPFYAQF_					0	0	0		ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7794818647	2	571.779482	1141.54441	1.7013	0.00097277	-1.6889	-0.0009657	0.012366	7.0708E-06	571.7781369054424	30.342	0.21717	30.342	30.198	30.415	0	1263	82	0.85970795	0.049717486	0.85970795	348.50308	0	20.154144						263	10	4	NaN	NaN	NaN	0.057383	1	14513	14513		43.776	11.323	1	30937			4074	1717	2410	2448	3195	3195					-0.02069963276630915
EQIPFYAQF	9	Unmodified	_EQIPFYAQF_					0	0	0		ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7794818647	2	571.779482	1141.54441	1.5487	0.00088552	-0.72277	-0.00041327	0.82593	0.00047225	571.7789002098297	30.439	0.096506	30.439	30.415	30.511	0	1227	112	0.88180584	0.06807256	0.88180584	357.46097	0	27.594818						199	5	3	NaN	NaN	NaN	0.057383	1	14515	14515		43.776	30.773	1	32400			4075	1717	2410	2448	3196	3196					-0.02069963276630915
EQIPFYAQF	9	Unmodified	_EQIPFYAQF_					0	0	0		ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7794818647	2	571.779482	1141.54441	0.73388	0.00041962	0.037577	2.1486E-05	0.77145	0.0004411	571.77966664846	30.438	0.14482	30.432	30.384	30.529	-0.0057545	1224	76	0.883646	0.046029747	0.88212657	358.2069	0	18.65924						223	7	3	NaN	NaN	NaN	0.10945	1	14041	14041		34.454	20.029	1	38652			4076	1717	2410	2448	3197	3197					-0.02069963276630915
EQIPFYAQF	9	Unmodified						0	0	0		ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	ENSG00000109205|ENST00000683306|ODAM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.779482	1141.54441	0.83567	0.00047782	-6.1388	-0.0035101	-5.3032	-0.0030322	572.2771271511585	30.679	0.14474	30.673	30.625	30.77	-0.0057545	1311	43	0.83019954	0.02584505	0.8286801	336.54114		10.476898	0.16554	-0.0021034	-0.015514	NaN	43.776	176	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13600			4077	1717	2410	2448							-0.02069963276630915
EQKKYEFCR	9	Unmodified	_EQKKYEFCR_					0	0	0			REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.80042265955	2	615.800423	1229.58629	0.60129	0.00037027	-5.8387	-0.0035955	-5.2374	-0.0032252	616.298216626021	30.317	0.072372	30.311	30.238	30.311	-0.0064087	1143	64	0.9332562	0.03854406	0.93173677	377.99414	0	15.61142						112	4	2	NaN	NaN	NaN	0.41766	1	16533	16533		13.003	4.0409	1	10635	+		4078	8344	2411	2449	3198	3198					-0.019317308597464944
EQKKYEFCR	9	Unmodified						0	0	0			REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.800423	1229.58629	1.2179	0.00074999	-3.0418	-0.0018731	-1.8239	-0.0011231	616.3010542079198	30.173	0.096539	30.173	30.125	30.222	0	1131	76	0.94059354	0.0458858	0.94059354	380.96597		18.584991	-0.068692	0.0014994	0.0044284	NaN	13.003	109	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9057.6	+		4079	8344	2411	2449							-0.019317308597464944
EQKKYEFCR	9	Unmodified						0	0	0			REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	REV__ENPEP|p.V169M|1|0.17|ENSG00000138792|chr4:110476919-110476919|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	615.800423	1229.58629	0.60129	0.00037027	-5.8387	-0.0035955	-5.2374	-0.0032252	616.298216626021	30.317	0.072372	30.311	30.238	30.311	-0.0064087	1143	64	0.9332562	0.03854406	0.93173677	377.99414		15.61142	0.068692	-0.0019453	-0.0044284	NaN	13.003	112	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10635	+		4080	8344	2411	2449							-0.019317308597464944
EQKPAPLA	8	Unmodified	_EQKPAPLA_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.2425352524	2	427.242535	852.470518	1.0268	0.00043868	-10.366	-0.0044289	-9.3396	-0.0039903	427.2380828363943	29.328	0.096533	29.32	29.296	29.393	-0.0077209	1404	34	0.77288127	0.020371795	0.7713618	314.57047	0	8.291534						66	5	2	NaN	NaN	NaN	0.83211	1	5285	5285		4.9097	0.94122	1	6566	+		4081	8367	2412	2450	3199	3199					0.038381133517077615
EQLQFCGLML	10	Unmodified	_EQLQFCGLML_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.2883022017501	2	591.288302	1180.56205	0.74675	0.00044155	-3.9107	-0.0023124	-3.164	-0.0018708	591.2857378794205	27.856	0.14484	27.846	27.798	27.943	-0.009552	1209	88	0.892844	0.05330801	0.8913246	361.79276	0	21.601135						211	7	3	NaN	NaN	NaN	0.66626	1	15256	15256		10.36	4.666	1	28862	+		4082	8607	2413	2451	3200	3200					-0.021007073376267726
EQLQFCGLML	10	Unmodified						0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.288302	1180.56205	1.5205	0.00089907	-4.143	-0.0024497	-2.6224	-0.0015506	591.2869896903333	27.833	0.14477	27.833	27.808	27.953	0	1173	100	0.91489893	0.060634673	0.91489893	370.72974		24.570038	-0.006897	-0.00014178	0.011787	NaN	10.36	251	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29084	+		4083	8607	2413	2451							-0.021007073376267726
EQLQFCGLML	10	Unmodified						0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.288302	1180.56205	0.74675	0.00044155	-3.9107	-0.0023124	-3.164	-0.0018708	591.2857378794205	27.856	0.14484	27.846	27.798	27.943	-0.009552	1209	88	0.892844	0.05330801	0.8913246	361.79276		21.601135	0.006897	0.00013283	-0.011787	NaN	10.36	211	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28862	+		4084	8607	2413	2451							-0.021007073376267726
EQLSLDELW	9	Unmodified	_EQLSLDELW_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.77967882995	2	566.779679	1131.5448	1.0171	0.00057648	-2.1382	-0.0012119	-1.1211	-0.00063541	567.2793220425302	26.866	0.048273	26.856	26.808	26.856	-0.010645	1212	64	0.8910048	0.038623214	0.88948536	361.2281	0	15.658508						101	3	2	NaN	NaN	NaN	0.51576	1	13696	13696		8.962	1.9776	1	15370			4085	995	2414	2452	3201	3201					-0.015705883474538496
EQLSLDELW	9	Unmodified						0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.779679	1131.5448	1.9014	0.0010777	-5.1963	-0.0029452	-3.2949	-0.0018675	567.2789690372389	26.625	0.14483	26.625	26.529	26.674	0	1209	40	0.892844	0.023909628	0.892844	361.97372		9.693359	-0.11518	-0.0013448	0.0016793	NaN	8.962	150	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35029			4086	995	2414	2452							-0.015705883474538496
EQNNSWTAENF	11	Unmodified	_EQNNSWTAENF_					0	0	0		nc|ENSG00000171984|Q8IYI0-2|SHLD1;ENSG00000171984|ENST00000303142|SHLD1	nc|ENSG00000171984|Q8IYI0-2|SHLD1	nc|ENSG00000171984|Q8IYI0-2|SHLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.2811056032	2	670.281106	1338.54766	1.0398	0.00069695	-7.357	-0.0049312	-6.3172	-0.0042343	670.2751749484925	27.735	0.14477	27.726	27.677	27.822	-0.009552	1113	40	0.9515937	0.023827195	0.95007426	385.0728	0	9.641937						108	7	2	NaN	NaN	NaN	0.62612	1	18520	18520		12.307	3.3876	1	15993			4087	4818	2415	2453	3202	3202					-0.10807364960578525
EQNWSLQDH	9	Unmodified	_EQNWSLQDH_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;nc|ENSG00000175455|Q49A88-3|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.17210996349996	3	386.17211	1155.4945	1.5383	0.00059403	-2.0244	-0.00078178	-0.48617	-0.00018775	386.17149407811945	22.573	0.14476	22.573	22.549	22.694	0	1521	40	0.70049703	0.024177909	0.70049703	425.87894	0	14.699371						98	7	2	NaN	NaN	NaN	0.63698	1	14996	14996		2.1026	0.71857	1	11130			4088	4993	2416	2454	3203	3203					-0.07702697952572635
EQNWSLQDH	9	Unmodified						0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;nc|ENSG00000175455|Q49A88-3|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	386.17211	1155.4945	1.7663	0.0006821	-4.8561	-0.0018753	-3.0898	-0.0011932	386.16971419292895	22.621	0.048231	22.607	22.583	22.631	-0.01354	1524	43	0.698637	0.026039124	0.69711757	424.7481		15.830933	0.017074	-0.0021844	-0.0016897	NaN	2.1026	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4745.2			4089	4993	2416	2454							-0.07702697952572635
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.2851283486	2	622.285128	1242.5557	1.3359	0.00083131	-1.4317	-0.00089093	-0.095807	-5.9619E-05	622.2843595158141	20.429	0.19226	20.429	20.357	20.549	0	1200	67	0.89836043	0.040434003	0.89836043	363.8182	0	16.37497						371	9	3	NaN	NaN	NaN	0.19268	1	17585	17585		25.801	8.002	1	59070			4090	4351	2417	2455	3204	3204					-0.05587185973149644
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2851283486	2	622.285128	1242.5557	0.90695	0.00056438	-0.58969	-0.00036695	0.31726	0.00019743	622.284523395664	20.429	0.31302	20.415	20.319	20.632	-0.014141	1200	82	0.89836043	0.049615502	0.896841	363.8182	0	20.093323						406	14	4	NaN	NaN	NaN	0.14787	1	16838	16838		28.896	5.5612	1	63724			4091	4351	2417	2455	3205	3205					-0.05587185973149644
EQPGSGGV	8	Unmodified	_EQPGSGGV_					0	0	0			REV__MSR1|p.H359Q|1|0.3|ENSG00000038945|chr8:16120563-16120563|G/T|missense_variant	REV__MSR1|p.H359Q|1|0.3|ENSG00000038945|chr8:16120563-16120563|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.3366091094001	1	730.336609	729.329333	1.3165	0.0009615	4.4116	0.003222	5.7281	0.0041835	730.3402563917535	28.75	0.12066	28.75	28.701	28.822	0	621	58	1.2495319	0.03422022	1.2495319	254.97112	0	6.9827423						153	6	2	NaN	NaN	NaN	0.75561	1	3749	3749		15.175	3.6269	1	15672	+		4092	13072	2418	2456	3206	3206					-0.04615885021564736
EQPNKDVV	8	Unmodified	_EQPNKDVV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4734369418001	1	928.473437	927.46616	0.8115	0.00075345	4.3039	0.0039961	5.1154	0.0047495	928.4789598925285	28.749	0.1689	28.74	28.692	28.861	-0.0083504	339	103	1.4179583	0.060641527	1.4164388	288.1964	0	12.325256						316	8	3	NaN	NaN	NaN	0.67765	1	6413	6413		20.449	2.6497	1	27711			4093	2514	2419	2457	3207	3207					-0.0004739586186133238
EQPTTLSM	8	Unmodified	_EQPTTLSM_					0	0	0		nc|ENSG00000188316|A6NNW6-4|ENO4;ENSG00000188316|ENST00000341276|ENO4	nc|ENSG00000188316|A6NNW6-4|ENO4	nc|ENSG00000188316|A6NNW6-4|ENO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4237095572	1	906.42371	905.416433	1.674	0.0015174	3.5384	0.0032072	5.2123	0.0047246	906.426292339195	21.272	0.096292	21.272	21.272	21.368	0	387	73	1.389409	0.042878747	1.389409	282.49442	0	8.718109						99	5	2	NaN	NaN	NaN	0.3434	1	6169	6169		39.459	2.1564	1	11922			4094	5545	2420	2458	3208	3208					-0.04005846862162343
EQPYKWEKF	9	Unmodified	_EQPYKWEKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.8766343617666	3	418.876634	1253.60807	2.3489	0.0009839	-3.9745	-0.0016648	-1.6256	-0.00068095	418.87469736159716	18.556	0.071993	18.556	18.532	18.604	0	1458	28	0.7395112	0.016698599	0.7395112	449.18372	0	10.142822						42	4	2	NaN	NaN	NaN	0.50099	1	17868	17868		9.5705	6.8663	1	3408.4			4095	5951	2421	2459	3209	3209					-0.00858602839548439
EQPYKWEKF	9	Unmodified	_EQPYKWEKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.81131330935	2	627.811313	1253.60807	2.3615	0.0014826	-0.76773	-0.00048199	1.5937	0.0010006	627.8107592752872	18.556	0.071993	18.556	18.532	18.604	0	1158	34	0.92408	0.020189762	0.92408	374.1979	0	8.175659						48	4	2	NaN	NaN	NaN	0.60102	1	17870	17870		3.2116	0	1	3922			4096	5951	2421	2459	3210	3210					-0.00858602839548439
EQPYKWEKF	9	Unmodified						0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	418.876634	1253.60807	2.3079	0.00096671	-5.2878	-0.0022149	-2.9799	-0.0012482	418.87413542577275	18.626	0.024014	18.612	18.588	18.612	-0.014059	1449	25	0.74507743	0.014842391	0.743558	452.56467		9.015381	0.02764	-0.00059072	0.0020234	NaN	9.5705	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3226.8			4097	5951	2421	2459							-0.00858602839548439
EQQIRDQQAM	10	Unmodified	_EQQIRDQQAM_					0	0	0			REV__ENST00000447683.2_1_11:63753928-63755939:+|nuORF	REV__ENST00000447683.2_1_11:63753928-63755939:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.7958685979	2	623.795869	1245.57718	0.59546	0.00037145	0.73832	0.00046056	1.3338	0.000832	623.7968808392988	20.742	0.24092	20.728	20.632	20.873	-0.014088	1173	64	0.91489893	0.03856069	0.9133795	370.5061	0	15.615906						306	11	3	NaN	NaN	NaN	0.56921	1	16906	16906		16.584	0	1	34130	+		4098	10480	2422	2460	3211	3211					-0.03578124216073775
EQQIRDQQAM	10	Unmodified						0	0	0			REV__ENST00000447683.2_1_11:63753928-63755939:+|nuORF	REV__ENST00000447683.2_1_11:63753928-63755939:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.795869	1245.57718	0.59546	0.00037145	0.73832	0.00046056	1.3338	0.000832	623.7968808392988	20.742	0.24092	20.728	20.632	20.873	-0.014088	1173	64	0.91489893	0.03856069	0.9133795	370.5061		15.615906	-0.0068816	0.0016234	-0.00075972	NaN	16.584	306	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34130	+		4099	10480	2422	2460							-0.03578124216073775
EQRPLGRGG	9	Unmodified	_EQRPLGRGG_					0	0	0			REV__ENST00000238721.8_1_2:24307192-24307630:-|nuORF	REV__ENST00000238721.8_1_2:24307192-24307630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.5224528199002	1	969.522453	968.515176	1.2475	0.0012094	2.3365	0.0022653	3.584	0.0034747	969.5241879052	34.877	0.12054	34.877	34.829	34.95	-4.5776E-05	195	55	1.5033154	0.03193426	1.501796	305.35556	0	6.486511						143	6	3	NaN	NaN	NaN	0.31737	1	7423	7423		17.799	2.3363	1	11997	+		4100	11492	2423	2461	3212	3212					0.02965937217766168
EQTDFHVK	8	Unmodified	_EQTDFHVK_					0	0	0			REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.24580622285004	2	502.245806	1002.47706	1.2382	0.00062187	-9.7625	-0.0049032	-8.5244	-0.0042813	502.7419315452433	32.104	0.07238	32.104	32.104	32.177	0	1320	49	0.824661	0.029533982	0.824661	334.84885	0	11.992096						56	4	2	NaN	NaN	NaN	0.83913	1	8683	8683		3.9685	0.39529	1	5453.6	+		4101	10229	2424	2462	3213	3213					-0.024079934875658182
EQTDVGILS	9	Unmodified	_EQTDVGILS_					0	0	0			REV__tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1	REV__tr|U7SSN9|U7SSN9_FUSNU3-deoxy-manno-octulosonatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.24547187185004	2	481.245472	960.476391	1.8138	0.0008729	-2.4691	-0.0011883	-0.6553	-0.00031536	481.2443710273125	21.73	0.16849	21.73	21.705	21.874	0	1362	46	0.79879075	0.027737617	0.79879075	324.53632	0	11.269348						206	8	3	NaN	NaN	NaN	0.33629	1	7343	7343		16.584	1.1215	1	30062	+		4102	13480	2425	2463	3214	3214					-0.005428329272717747
EQTHKLEL	8	Unmodified	_EQTHKLEL_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1;nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5312861716999	1	997.531286	996.52401	2.3331	0.0023273	-12.146	-0.012116	-9.8126	-0.0097884	997.5194970558159	25.901	0.096512	25.901	25.853	25.95	0	243	49	1.4749115	0.028425217	1.4749115	299.468	0	5.7714844						79	5	2	NaN	NaN	NaN	0.78122	1	8442	8442		11.739	0.19041	1	9664.5			4103	4996	2426	2464	3215	3215					0.02560866063549838
EQVVPLPSCP	10	Unmodified	_EQVVPLPSCP_					0	0	0		ENST00000589246.1_1_17:75493182-75494737:+|nuORF	ENST00000589246.1_1_17:75493182-75494737:+|nuORF	ENST00000589246.1_1_17:75493182-75494737:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5394080170001	1	1068.53941	1067.53213	1.1328	0.0012104	-5.314	-0.0056782	-4.1812	-0.0044678	1068.5333395983116	32.441	0.07238	32.438	32.414	32.486	-0.0031052	93	52	1.5635144	0.03005004	1.5619949	317.16977	0	6.0958557						73	4	2	NaN	NaN	NaN	0.76548	1	11171	11171		3.5698	0.68031	1	4615.9			4104	7720	2427	2465	3216	3216					0.00106676988707477
ERAFYFVP	8	Unmodified	_ERAFYFVP_					0	0	0			REV__nc|ENSG00000172046|O94966-4|USP19	REV__nc|ENSG00000172046|O94966-4|USP19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7636348352501	2	514.763635	1027.51272	1.6728	0.00086108	-2.7249	-0.0014027	-1.0522	-0.00054161	514.7615998015578	36.133	0.12062	36.133	36.109	36.229	0	1263	70	0.85970795	0.042411506	0.85970795	348.96426	0	17.215271						101	6	2	NaN	NaN	NaN	0.84651	1	9665	9665		1.6704	0	1	7856	+		4105	10646	2428	2466	3217	3217					6.088760096645274E-05
ERAGLLFIFNF	11	Unmodified	_ERAGLLFIFNF_					0	0	0		ENST00000484687.1_1_3:81584326-81627079:-|nuORF;ENSG00000114480|ENST00000429644|GBE1	ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENST00000484687.1_1_3:81584326-81627079:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.8638801961	2	663.86388	1325.71321	1.7767	0.0011795	-9.6709	-0.0064202	-7.8942	-0.0052407	664.3569121391758	39.018	0.12028	39.023	38.951	39.071	0.0046806	1185	64	0.90755045	0.03858155	0.906031	367.2866	0	15.613983						156	6	2	NaN	NaN	NaN	0.76803	1	18334	18334		2.3381	0.4135	1	17292			4106	1960	2429	2467	3218	3218					0.06337938356887207
ERARIEKAYA	10	Unmodified	_ERARIEKAYA_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3;nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.89116641149997	3	402.891166	1205.65167	1.687	0.00067966	-10.13	-0.0040813	-8.4432	-0.0034017	402.8865784038928	17.498	0.072023	17.484	17.46	17.532	-0.013569	1488	40	0.7209441	0.024151623	0.71942466	438.09537	0	14.6762085						99	4	3	NaN	NaN	NaN	0.52161	1	15967	15967		18.558	7.6967	1	10103			4107	1212	2430	2468	3219	3219					0.057070066575988676
ERCEEHSSLE	10	Unmodified	_ERCEEHSSLE_					0	0	0			REV__ENSG00000188735|ENST00000449592|TMEM120B	REV__ENSG00000188735|ENST00000449592|TMEM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.7564090864001	2	609.756409	1217.49827	0.33163	0.00020221	5.9175	0.0036083	6.2492	0.0038105	609.7604985992099	32.055	0.1689	32.051	32.003	32.172	-0.0037613	1203	85	0.8965218	0.051505983	0.89500237	363.1557	0	20.863617						424	8	5	NaN	NaN	NaN	0.64611	1	16242	16242		11.739	0.56853	1	63400	+		4108	11066	2431	2469	3220	3220					-0.10178396241008159
ERDERYIH	8	Unmodified	_ERDERYIH_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.18434991593335	3	373.18435	1116.53122	1.447	0.00054	6.4042	0.00239	7.8512	0.00293	373.5200743460013	13.517	0.14399	13.507	13.459	13.603	-0.010098	1473	43	0.7302302	0.025991142	0.7287108	444.13803	0	15.808228						161	7	3	NaN	NaN	NaN	0.83211	1	13133	13133		3.2116	0	1	14476			4109	783	2432	2470	3221	3221					-0.0223840133601243
ERDFLQRPGQQ	11	Unmodified	_ERDFLQRPGQQ_					0	0	0		ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000244482|Q6PI73|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;ENST00000391735.3_19:54722514-54745001:-|nuORF	ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.34965690515	2	687.349657	1372.68476	2.0487	0.0014082	4.3378	0.0029816	6.3865	0.0043898	687.852991692981	26.239	0.048275	26.228	26.18	26.228	-0.011137	1074	49	0.9754029	0.029279947	0.97388345	394.60712	0	11.845428						86	3	3	NaN	NaN	NaN	0.74155	1	18892	18892		4.7291	0.41892	1	7459.2			4110	6092	2433	2471	3222	3222					0.013325887096470979
ERDLKRRYM	9	Unmodified	_ERDLKRRYM_					0	0	0			REV__nc|ENSG00000205560|Q92523-4|CPT1B	REV__nc|ENSG00000205560|Q92523-4|CPT1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.8960344804	3	422.896034	1265.66627	1.7572	0.0007431	3.9417	0.0016669	5.6989	0.00241	422.89740373162124	14.093	0.096084	14.093	14.069	14.165	0	1410	28	0.76917666	0.016673267	0.76917666	467.15424	0	10.126404						52	5	2	NaN	NaN	NaN	0.68136	1	18128	18128		0.33255	0.084791	1	4785.6	+		4111	11265	2434	2472	3223	3223					0.04406755534091644
ERDVERFFKGY	11	Unmodified	_ERDVERFFKGY_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.57724746496666	3	482.577247	1444.70991	1.4567	0.00070298	-2.0191	-0.00097438	-0.5624	-0.0002714	482.5764296717843	26.843	0.16935	26.843	26.77	26.94	0	1389	46	0.7821392	0.027764738	0.7821392	474.39194	0	16.84018						105	8	2	NaN	NaN	NaN	0.7072	1	20355	20355		7.2894	3.3807	1	10450			4112	2078	2435	2473	3224	3224					0.005346435122191906
EREHCDTEGE	10	Unmodified	_EREHCDTEGE_					0	0	0		ENSG00000028310|ENST00000467963|BRD9;ENST00000487688.1_1_5:889867-892539:-|nuORF;ENST00000466684.5_1_5:889867-892639:-|nuORF;ENST00000495265.5_1_5:889867-892820:-|nuORF;ENST00000483173.5_3_5:889166-892639:-|nuORF	ENSG00000028310|ENST00000467963|BRD9	ENSG00000028310|ENST00000467963|BRD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.73039130115	2	602.730391	1203.44623	0.63223	0.00038106	5.2608	0.0031709	5.8931	0.0035519	603.2346321641924	33.697	0.1448	33.697	33.624	33.769	0	1242	31	0.87260187	0.018410921	0.87260187	353.51266	0	7.4587097						72	7	2	NaN	NaN	NaN	0.74182	1	16562	16562		5.1889	0	1	4728.2			4113	485	2436	2474	3225	3225					-0.14735559654786812
ERFSMVSL	8	Unmodified	_ERFSMVSL_					0	0	0		nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000559374.1_1_15:91454636-91455656:+|nuORF	nc|ENSG00000196547|P49641-2|MAN2A2	nc|ENSG00000196547|P49641-2|MAN2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.4869785160002	1	968.486979	967.479702	0.81178	0.0007862	6.1631	0.0059689	6.9748	0.006755	968.4933821422003	32.079	0.096546	32.075	32.027	32.123	-0.0037613	324	43	1.42687	0.024948835	1.4253505	289.83218	0	5.067688						77	5	2	NaN	NaN	NaN	0.84562	1	7394	7394		2.1763	0.50597	1	7208.8			4114	5637	2437	2475	3226	3226					-0.005338613542448911
ERGQTLALLFG	11	Unmodified	_ERGQTLALLFG_					0	0	0			REV__ENST00000498022.1_1_2:71304672-71305635:+|nuORF	REV__ENST00000498022.1_1_2:71304672-71305635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.83786241085	2	602.837862	1203.66117	0.60877	0.00036699	0.97372	0.000587	1.5825	0.00095399	603.3404300193007	30.293	0.21715	30.287	30.166	30.383	-0.0064106	1128	37	0.9424274	0.022005022	0.94090796	381.79996	0	8.914734						187	10	3	NaN	NaN	NaN	0.43809	1	15933	15933		20.688	0.17433	1	20754	+		4115	9376	2438	2476	3227	3227					0.06748774943116587
ERGQTLALLFG	11	Unmodified						0	0	0			REV__ENST00000498022.1_1_2:71304672-71305635:+|nuORF	REV__ENST00000498022.1_1_2:71304672-71305635:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.837862	1203.66117	0.60877	0.00036699	0.97372	0.000587	1.5825	0.00095399	603.3404300193007	30.293	0.21715	30.287	30.166	30.383	-0.0064106	1128	37	0.9424274	0.022005022	0.94090796	381.79996		8.914734	0.020444	-0.00041508	0.00015721	NaN	20.688	187	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20754	+		4116	9376	2438	2476							0.06748774943116587
ERIHLDKM	8	Unmodified	_ERIHLDKM_					0	0	0			REV__KIF27|p.I538*|1|0.17|ENSG00000165115|chr9:83891492-83891492|T/-|frameshift_variant	REV__KIF27|p.I538*|1|0.17|ENSG00000165115|chr9:83891492-83891492|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5509757563	1	1041.55098	1040.5437	1.1453	0.0011929	-0.80196	-0.00083529	0.34333	0.00035759	1041.5512859808307	30.8	0.16895	30.794	30.77	30.939	-0.0057545	138	106	1.5369828	0.061992407	1.5354633	311.8908	0	12.579742						256	8	3	NaN	NaN	NaN	0.76406	1	10019	10019		14.042	0.30454	1	44318	+		4117	10367	2439	2477	3228	3228					0.02504918802674183
ERKGFRLGFS	10	Unmodified	_ERKGFRLGFS_					0	0	0			REV__ENSG00000170498|ENST00000367194|KISS1	REV__ENSG00000170498|ENST00000367194|KISS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.8303717297501	2	598.830372	1195.64619	1.5941	0.00095458	-10.61	-0.0063539	-9.0164	-0.0053993	598.8236217499001	23.489	0.24118	23.476	23.427	23.668	-0.013294	1179	64	0.9112251	0.038573205	0.90970564	369.18726	0	15.628113						392	11	4	NaN	NaN	NaN	0.60686	1	15695	15695		14.425	0.96197	1	87898	+		4118	10588	2440	2478	3229	3229					0.05619327865815649
ERLHRIWQKLR	11	Unmodified	_ERLHRIWQKLR_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.48238850484995	4	384.482389	1533.90045	1.4487	0.000557	4.98	0.0019147	6.4287	0.0024717	384.4847915004157	29.28	0.21714	29.272	29.224	29.441	-0.0077229	1440	28	0.7506418	0.016689539	0.7491224	606.71234	0	13.489502						73	10	2	NaN	NaN	NaN	0.77436	1	19646	19646		1.2289	0	1	6037.3			4119	6203	2441	2479	3230	3230					0.15485394684947096
ERLINRQRNM	10	Unmodified	_ERLINRQRNM_					0	0	0			REV__nc|ENSG00000126545|P47710-3|CSN1S1	REV__nc|ENSG00000126545|P47710-3|CSN1S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3620443864	2	665.362044	1328.70954	1.0813	0.00071942	6.8794	0.0045773	7.9606	0.0052967	665.3670190695714	41.69	0.14429	41.69	41.618	41.762	0	1215	52	0.8891654	0.031263053	0.8891654	359.8377	0	12.651886						164	7	3	NaN	NaN	NaN	0.77513	1	19242	19242		1.7022	0.37103	1	17869	+		4120	9419	2442	2480	3231	3231					0.05832945311385629
ERLRSLEST	9	Unmodified	_ERLRSLEST_					0	0	0			REV__ENSG00000070031|ENST00000176195|SCT	REV__ENSG00000070031|ENST00000176195|SCT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7961945614001	2	545.796195	1089.57784	1.1785	0.00064325	6.5808	0.0035918	7.7594	0.004235	545.8002598297918	22.091	0.048193	22.077	22.053	22.101	-0.013731	1236	64	0.876284	0.038660824	0.8747646	355.42465	0	15.681						63	3	2	NaN	NaN	NaN	0.27608	1	12078	12078		20.449	4.986	1	22849	+		4121	8565	2443	2481	3232	3232					0.0366303849527867
ERLRSLEST	9	Unmodified						0	0	0			REV__ENSG00000070031|ENST00000176195|SCT	REV__ENSG00000070031|ENST00000176195|SCT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.796195	1089.57784	1.636	0.00089291	10.314	0.0056296	11.95	0.0065225	545.8020229836071	22.091	0.096512	22.091	22.043	22.139	0	1230	64	0.8799654	0.03865248	0.8799654	356.91782		15.677582	0.0070468	0.0019566	0.0026004	NaN	20.449	147	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40919	+		4122	8565	2443	2481							0.0366303849527867
ERLRSLEST	9	Unmodified						0	0	0			REV__ENSG00000070031|ENST00000176195|SCT	REV__ENSG00000070031|ENST00000176195|SCT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.796195	1089.57784	1.1785	0.00064325	6.5808	0.0035918	7.7594	0.004235	545.8002598297918	22.091	0.048193	22.077	22.053	22.101	-0.013731	1236	64	0.876284	0.038660824	0.8747646	355.42465		15.681	-0.0070468	-0.002119	-0.0026004	NaN	20.449	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22849	+		4123	8565	2443	2481							0.0366303849527867
ERMLKLESYW	10	Unmodified	_ERMLKLESYW_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.8448301632001	2	677.84483	1353.67511	1.2928	0.00087634	-1.3874	-0.00094043	-0.094549	-6.409E-05	677.8454212034783	27.543	0.096539	27.543	27.543	27.639	0	1098	49	0.960755	0.029308379	0.960755	388.73563	0	11.858612						68	5	2	NaN	NaN	NaN	0.77594	1	19590	19590		1.5054	0	1	6004.2			4124	3993	2444	2482	3233	3233					0.01241684379920116
ERNIVGAVF	9	Unmodified	_ERNIVGAVF_					0	0	0			REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF	REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5523559648002	1	1004.55236	1003.54508	2.1055	0.002115	-8.1724	-0.0082096	-6.0669	-0.0060945	1004.544015817187	48.139	0.35963	48.139	48.019	48.379	0	213	139	1.4926696	0.08166182	1.4926696	303.0447	0	16.579132						903	16	3	NaN	NaN	NaN	0.25448	1	8735	8735		21.835	2.7167	1	141850	+		4125	8446	2445	2483	3234	3234					0.04344876163099798
ERNKNSRTQS	10	Unmodified	_ERNKNSRTQS_					0	0	0		ENST00000548760.2_1_12:98909279-98909996:-|nuORF	ENST00000548760.2_1_12:98909279-98909996:-|nuORF	ENST00000548760.2_1_12:98909279-98909996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3105317446501	2	610.310532	1218.60651	1.1673	0.0007124	-8.9703	-0.0054746	-7.803	-0.0047622	610.3051393895973	25.033	0.26545	25.033	24.864	25.129	0	1146	67	0.93142134	0.04038167	0.93142134	377.28873	0	16.35733						193	12	2	NaN	NaN	NaN	0.52943	1	16949	16949		18.233	4.7704	1	21870			4126	7532	2446	2484	3235	3235					0.005951561244273762
ERNKNSRTQS	10	Unmodified						0	0	0		ENST00000548760.2_1_12:98909279-98909996:-|nuORF	ENST00000548760.2_1_12:98909279-98909996:-|nuORF	ENST00000548760.2_1_12:98909279-98909996:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	610.310532	1218.60651	1.3073	0.00079784	-11.294	-0.0068931	-9.9872	-0.0060953	610.3021092552154	25.37	0.19294	25.358	25.238	25.431	-0.012011	1167	88	0.91857195	0.053233266	0.9170525	372.08386		21.56308	0.16275	-0.0017267	-0.0071844	NaN	18.233	369	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32458			4127	7532	2446	2484							0.005951561244273762
ERNLEETKSL	10	Unmodified	_ERNLEETKSL_					0	0	0			REV__chr17:41583676-41611069|294|137.56|0.79|7.44|-|0|KRT14,KRT16|1	REV__chr17:41583676-41611069|294|137.56|0.79|7.44|-|0|KRT14,KRT16|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.81986662295	2	609.819867	1217.62518	1.7051	0.0010398	-0.72485	-0.00044203	0.98028	0.0005978	609.8195892241421	37.913	0.12019	37.916	37.916	38.036	0.0034256	1179	40	0.9112251	0.023886383	0.90970564	369.11118	0	9.67569						57	6	2	NaN	NaN	NaN	0.77348	1	16256	16256		2.1026	0.17793	1	3144.9	+		4128	8218	2447	2485	3236	3236					0.02507272975617525
ERPTEDGRQT	10	Unmodified	_ERPTEDGRQT_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.78381546765	2	594.783815	1187.55308	0.3447	0.00020502	-8.086	-0.0048094	-7.7413	-0.0046044	594.7781441020152	32.031	0.12066	32.027	32.003	32.123	-0.0037613	1221	91	0.885486	0.0551731	0.88396657	358.7868	0	22.355377						323	6	4	NaN	NaN	NaN	0.70677	1	15464	15464		7.5876	0	1	35473	+		4129	9746	2448	2486	3237	3237					-0.03319641378107008
ERQLHFFLE	9	Unmodified	_ERQLHFFLE_					0	0	0			REV__ENSG00000101049|ENST00000373100|SGK2	REV__ENSG00000101049|ENST00000373100|SGK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.8803788245333	3	406.880379	1217.61931	2.814	0.001145	-4.1434	-0.0016859	-1.3294	-0.0005409	406.87858377304576	10.565	0.04791	10.565	10.541	10.589	0	1425	22	0.7599118	0.012975156	0.7599118	461.72348	0	7.8836975						30	3	2	NaN	NaN	NaN	0.56671	1	16932	16932		3.9281	0.66711	1	2432.6	+		4130	8842	2449	2487	3238	3238					0.019202192546117658
ERQRKWFICI	10	Unmodified	_ERQRKWFICI_					0	0	0			REV__nc|ENSG00000215811|A8MVZ5|BTNL10P	REV__nc|ENSG00000215811|A8MVZ5|BTNL10P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.2519296919668	3	460.25193	1377.73396	2.1582	0.00099331	1.3591	0.00062555	3.5173	0.0016189	460.2523429637483	24.405	0.048265	24.393	24.393	24.441	-0.012747	1416	31	0.76547134	0.018526852	0.7639519	464.49606	0	11.242279						34	3	2	NaN	NaN	NaN	0.77513	1	18938	18938		0.63172	0.19954	1	1946	+		4131	13233	2450	2488	3239	3239					0.06020205464938044
ERQWCFAAFS	10	Unmodified	_ERQWCFAAFS_					0	0	0			REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.7794902522	2	622.77949	1243.54443	1.5915	0.00099117	-3.9008	-0.0024293	-2.3093	-0.0014382	622.7779760963756	21.681	0.16859	21.681	21.657	21.826	0	1170	58	0.91673553	0.034892023	0.91673553	371.25656	0	14.130463						253	8	3	NaN	NaN	NaN	0.76548	1	17609	17609		3.5698	0.68031	1	36148	+		4132	11514	2451	2489	3240	3240					-0.06760286548274053
ERQWCFAAFS	10	Unmodified						0	0	0			REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.77949	1243.54443	1.5915	0.00099117	-3.9008	-0.0024293	-2.3093	-0.0014382	622.7779760963756	21.681	0.16859	21.681	21.657	21.826	0	1170	58	0.91673553	0.034892023	0.91673553	371.25656		14.130463	-0.017093	0.0002935	0.00075972	NaN	3.5698	253	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36148	+		4133	11514	2451	2489							-0.06760286548274053
ERQWCFAAFS	10	Unmodified						0	0	0			REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.77949	1243.54443	0.93809	0.00058423	-4.5073	-0.002807	-3.5692	-0.0022228	622.777161359111	21.729	0.072241	21.715	21.691	21.764	-0.013897	1170	64	0.91673553	0.03856486	0.9152161	371.25656		15.617859	0.017093	-0.0004619	-0.00075972	NaN	3.5698	126	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20842	+		4134	11514	2451	2489							-0.06760286548274053
ERRCFTAAS	9	Unmodified	_ERRCFTAAS_					0	0	0		ENST00000493518.5_1_10:120514304-120514760:-|nuORF	ENST00000493518.5_1_10:120514304-120514760:-|nuORF	ENST00000493518.5_1_10:120514304-120514760:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.4941891588999	1	1040.49419	1039.48691	1.3524	0.0014072	5.5242	0.0057478	6.8766	0.007155	1040.500611586118	27.326	0.096531	27.326	27.277	27.374	0	156	67	1.5263584	0.03898108	1.5263584	309.73895	0	7.910309						116	5	2	NaN	NaN	NaN	0.31737	1	10180	10180		17.799	1.2148	1	8629.7			4135	7275	2452	2490	3241	3241					-0.03125128753845274
ERREKGACLEG	11	Unmodified	_ERREKGACLEG_					0	0	0			REV__VCL-ADK|2|fusion	REV__VCL-ADK|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3116858376001	2	624.311686	1246.60882	1.0308	0.00064353	7.3804	0.0046077	8.4112	0.0052512	624.3157541427063	21.681	0.12041	21.667	21.619	21.74	-0.013895	1125	58	0.9442611	0.034850597	0.94274163	382.39337	0	14.113342						180	6	4	NaN	NaN	NaN	0.40559	1	16949	16949		21.85	0.079341	1	20029	+		4136	8448	2453	2491	3242	3242					-0.0046213146213176515
ERRLDALEHR	10	Unmodified	_ERRLDALEHR_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.8523667695999	2	647.852367	1293.69018	1.0608	0.00068724	3.3343	0.0021601	4.3951	0.0028474	647.8545456232544	30.97	0.096556	30.97	30.946	31.042	0	1131	58	0.94059354	0.034846902	0.94059354	380.7563	0	14.106171						157	5	3	NaN	NaN	NaN	0.58645	1	18657	18657		15.822	8.2343	1	20694			4137	1199	2454	2492	3243	3243					0.0550831229211326
ERRLDALEHR	10	Unmodified	_ERRLDALEHR_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.8523667695999	2	647.852367	1293.69018	1.2764	0.00082693	1.5866	0.0010279	2.863	0.0018548	647.8535365112351	30.969	0.096552	30.964	30.915	31.012	-0.0050716	1128	61	0.9424274	0.036674976	0.94090796	381.49866	0	14.846191						157	5	3	NaN	NaN	NaN	0.5358	1	17825	17825		17.97	2.1478	1	19318			4138	1199	2454	2492	3244	3244					0.0550831229211326
ERRNHQPI	8	Unmodified	_ERRNHQPI_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.28358871265	2	525.283589	1048.55262	1.7048	0.00089548	2.1872	0.0011489	3.892	0.0020444	525.2832975685889	14.261	0.048038	14.261	14.213	14.261	0	1377	40	0.7895419	0.024054885	0.7895419	320.39807	0	9.761536						47	3	2	NaN	NaN	NaN	0.84756	1	10576	10576		1.072	0.14616	1	2696.4			4139	4931	2455	2493	3245	3245					0.03029028483365437
ERSFPECN	8	Unmodified	_ERSFPECN_					0	0	0		ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4094564765	1	981.409456	980.40218	1.77	0.0017371	-11.351	-0.01114	-9.5815	-0.0094033	981.3978569363755	24.623	0.072388	24.623	24.574	24.647	0	288	37	1.4482387	0.021355152	1.4482387	294.11832	0	4.3369446						51	4	2	NaN	NaN	NaN	0.78546	1	7889	7889		11.17	1.4243	1	3374.6			4140	5128	2456	2494	3246	3246					-0.08880499290455646
ERSFPECN	8	Unmodified						0	0	0		ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	981.409456	980.40218	2.2375	0.0021959	-12.195	-0.011968	-9.9575	-0.0097723	981.3976886418146	24.623	0.096498	24.61	24.562	24.658	-0.012394	288	40	1.4482387	0.02313602	1.4467193	294.11832		4.6986084	-0.0062524	-0.00039194	-0.00075972	NaN	11.17	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3557.2			4141	5128	2456	2494							-0.08880499290455646
ERSHAPSP	8	Unmodified	_ERSHAPSP_					0	0	0			REV__ENST00000400385.2_1_21:45231454-45232126:-|nuORF	REV__ENST00000400385.2_1_21:45231454-45232126:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.7172159589	2	440.717216	879.419879	1.8126	0.00079885	6.6937	0.00295	8.5063	0.0037489	440.7200922412802	23.441	0.36159	23.441	23.369	23.73	0	1323	73	0.8228144	0.044329762	0.8228144	334.73114	0	18.033905						658	16	5	NaN	NaN	NaN	0.6053	1	5787	5787		24.961	2.8347	1	329150	+		4142	12035	2457	2495	3247	3247					-0.02465415973290419
ERSHAPSP	8	Unmodified						0	0	0			REV__ENST00000400385.2_1_21:45231454-45232126:-|nuORF	REV__ENST00000400385.2_1_21:45231454-45232126:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	440.717216	879.419879	1.8126	0.00079885	6.6937	0.00295	8.5063	0.0037489	440.7200922412802	23.441	0.36159	23.441	23.369	23.73	0	1323	73	0.8228144	0.044329762	0.8228144	334.73114		18.033905	0.006872	-8.8173E-05	0.00075972	NaN	24.961	658	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329150	+		4143	12035	2457	2495							-0.02465415973290419
ERTFLKNCA	9	Unmodified	_ERTFLKNCA_					0	0	0			REV__ENST00000289816.9_2_16:89804878-89805280:+|nuORF	REV__ENST00000289816.9_2_16:89804878-89805280:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2765834225	2	541.276583	1080.53861	0.84868	0.00045937	-10.707	-0.0057953	-9.8581	-0.0053359	541.2703501693884	33.431	0.096535	33.431	33.407	33.504	0	1287	61	0.8449601	0.03689754	0.8449601	342.7554	0	14.967346						102	5	2	NaN	NaN	NaN	0.31471	1	11999	11999		17.97	0.17071	1	10681	+		4144	11622	2458	2496	3248	3248					0.0015661494005598797
ERTFLKNCA	9	Unmodified						0	0	0			REV__ENST00000289816.9_2_16:89804878-89805280:+|nuORF	REV__ENST00000289816.9_2_16:89804878-89805280:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.276583	1080.53861	0.84868	0.00045937	-10.707	-0.0057953	-9.8581	-0.0053359	541.2703501693884	33.431	0.096535	33.431	33.407	33.504	0	1287	61	0.8449601	0.03689754	0.8449601	342.7554		14.967346	0.0016148	-0.0011344	-0.00016237	NaN	17.97	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10681	+		4145	11622	2458	2496							0.0015661494005598797
ERTSSSTI	8	Unmodified	_ERTSSSTI_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.4370514355002	1	880.437051	879.429775	2.1419	0.0018858	-2.2745	-0.0020025	-0.13261	-0.00011675	880.4349886934064	23.417	0.24107	23.417	23.369	23.61	0	378	100	1.3947657	0.058955073	1.3947657	283.709	0	11.992035						414	11	3	NaN	NaN	NaN	0.74229	1	5788	5788		16.417	0	1	80784	+		4146	9235	2459	2497	3249	3249					-0.014762727585548419
ERTSSSTI	8	Unmodified						0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.437051	879.429775	2.1419	0.0018858	-2.2745	-0.0020025	-0.13261	-0.00011675	880.4349886934064	23.417	0.24107	23.417	23.369	23.61	0	378	100	1.3947657	0.058955073	1.3947657	283.709		11.992035	-0.0052149	0.00023555	0.00075972	NaN	16.417	414	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80784	+		4147	9235	2459	2497							-0.014762727585548419
ERYGGTES	8	Unmodified	_ERYGGTES_					0	0	0			REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF	REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.69868885475	2	449.698689	897.382825	1.2095	0.00054392	0.36546	0.00016435	1.575	0.00070827	449.698847681237	21.778	0.12035	21.778	21.73	21.85	0	1329	34	0.81912065	0.02031672	0.81912065	333.12598	0	8.262543						77	6	2	NaN	NaN	NaN	0.83211	1	6016	6016		4.9097	0.49665	1	6937	+		4148	11813	2460	2498	3250	3250					-0.06997132309709286
ERYGGTES	8	Unmodified						0	0	0			REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF	REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	449.698689	897.382825	1.2095	0.00054392	0.36546	0.00016435	1.575	0.00070827	449.698847681237	21.778	0.12035	21.778	21.73	21.85	0	1329	34	0.81912065	0.02031672	0.81912065	333.12598		8.262543	0.019036	-0.00013002	-0.00016377	NaN	4.9097	77	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6937	+		4149	11813	2460	2498							-0.06997132309709286
ESAGGLIQTAR	11	Unmodified	_ESAGGLIQTAR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7961945614001	2	551.796195	1101.57784	1.5213	0.00083947	-3.8631	-0.0021317	-2.3418	-0.0012922	551.7942558120477	16.518	0.16783	16.518	16.494	16.662	0	1245	58	0.87076044	0.03499019	0.87076044	353.13626	0	14.190247						222	8	3	NaN	NaN	NaN	0.3317	1	12910	12910		24.493	16.249	1	39229			4150	3067	2461	2499	3251	3251					0.031110384952853565
ESAGGLIQTAR	11	Unmodified	_ESAGGLIQTAR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7961945614001	2	551.796195	1101.57784	1.785	0.00098494	-3.1225	-0.001723	-1.3375	-0.00073802	551.793924077511	16.515	0.16792	16.502	16.502	16.67	-0.012993	1245	61	0.87076044	0.036833763	0.869241	353.13626	0	14.937897						280	8	4	NaN	NaN	NaN	0.40068	1	12576	12576		22.026	9.0229	1	49121			4151	3067	2461	2499	3252	3252					0.031110384952853565
ESALPLPQH	9	Unmodified	_ESALPLPQH_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.263998976	2	496.263999	990.513445	2.046	0.0010153	-2.0672	-0.0010259	-0.021177	-1.051E-05	496.26292597612604	23.007	0.048088	23.007	22.983	23.031	0	1323	34	0.8228144	0.02031231	0.8228144	334.15366	0	8.249054						68	3	3	NaN	NaN	NaN	0.62619	1	8233	8233		4.4131	0.44458	1	5385.1	+		4152	9363	2462	2500	3253	3253					0.01780883409139733
ESALPLPQH	9	Unmodified						0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.263999	990.513445	2.046	0.0010153	-2.0672	-0.0010259	-0.021177	-1.051E-05	496.26292597612604	23.007	0.048088	23.007	22.983	23.031	0	1323	34	0.8228144	0.02031231	0.8228144	334.15366		8.249054	-0.0050613	7.6402E-06	0.00075972	NaN	4.4131	68	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5385.1	+		4153	9363	2462	2500							0.01780883409139733
ESALPLPQH	9	Unmodified						0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.263999	990.513445	1.3341	0.00066205	-2.0797	-0.0010321	-0.74565	-0.00037004	496.2635195882182	23.031	0.16864	23.017	22.993	23.162	-0.013294	1323	31	0.8228144	0.018466711	0.82129496	334.15366		7.499542	0.0050613	-4.8221E-06	-0.00075972	NaN	4.4131	100	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9554.7	+		4154	9363	2462	2500							0.01780883409139733
ESAPEGQAQQR	11	Unmodified	_ESAPEGQAQQR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.78381546765	2	600.783815	1199.55308	2.3622	0.0014192	-1.823	-0.0010952	0.53916	0.00032392	600.7828346305027	11.14	0.3835	11.14	11.044	11.428	0	1230	49	0.8799654	0.029444695	0.8799654	356.50897	0	11.92923						483	17	4	NaN	NaN	NaN	4.3633E-05	1	16456	16456		89.374	43.547	1	109270			4155	697	2463	2501	3254	3254					-0.03871641378100321
ESAPEGQAQQR	11	Unmodified	_ESAPEGQAQQR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.78381546765	2	600.783815	1199.55308	1.2192	0.00073245	-0.28411	-0.00017069	0.93505	0.00056176	600.7836363638041	11.118	0.28754	11.111	11.015	11.302	-0.0071888	1230	52	0.8799654	0.031286716	0.878446	356.50897	0	12.675476						442	13	4	NaN	NaN	NaN	0.20668	1	15808	15808		29.706	17.137	1	108290			4156	697	2463	2501	3255	3255					-0.03871641378100321
ESAPGDFSL	9	Unmodified	_ESAPGDFSL_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.4152533609	1	922.415253	921.407977	1.5088	0.0013918	2.3331	0.0021521	3.8419	0.0035438	922.417398624391	24.647	0.16886	24.647	24.574	24.743	0	384	64	1.3911947	0.03749287	1.3911947	282.784	0	7.6210938						193	8	3	NaN	NaN	NaN	0.016254	1	6430	6430		76.739	29.603	1	17509			4157	5092	2464	2502	3256	3256					-0.05587077507141203
ESAPGDFSL	9	Unmodified	_ESAPGDFSL_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4152533609	1	922.415253	921.407977	1.04	0.00095929	1.063	0.00098048	2.1029	0.0019398	922.4158929121185	24.647	0.19292	24.634	24.586	24.779	-0.012394	384	58	1.3911947	0.03392577	1.3896753	282.784	0	6.895996						184	9	2	NaN	NaN	NaN	0.14301	1	6305	6305		29.598	6.2639	1	17894			4158	5092	2464	2502	3257	3257					-0.05587077507141203
ESAQDFASR	9	Unmodified	_ESAQDFASR_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|24|fusion;ENSG00000062716|ENST00000262291|VMP1;nc|ENSG00000062716|Q96GC9-2|VMP1;CLTC-VMP1|10|fusion;RPS6KB1-VMP1|3|fusion;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|4|fusion;VMP1-RPS6KB1|1|fusion	CLTC-VMP1|7|fusion	CLTC-VMP1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7305202994	2	505.73052	1009.44649	2.2666	0.0011463	-1.7702	-0.00089525	0.49643	0.00025106	505.72981820917624	13.805	0.07204	13.805	13.757	13.829	0	1332	37	0.8172735	0.02216494	0.8172735	331.81815	0	8.999084						83	4	3	NaN	NaN	NaN	0.57723	1	8942	8942		6.4299	0.96408	1	6281.8			4159	170	2465	2503	3258	3258					-0.05785771872615442
ESATLSEKRRR	11	Unmodified	_ESATLSEKRRR_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.9162631475333	3	444.916263	1331.72696	1.2735	0.00056662	0.73849	0.00032856	2.012	0.00089519	445.25072816675583	22.524	0.048275	22.511	22.486	22.535	-0.013733	1431	49	0.75620437	0.029659033	0.7546849	459.03003	0	18.003601						58	3	2	NaN	NaN	NaN	0.77168	1	18427	18427		0.56539	0	1	6261.5			4160	3049	2466	2504	3259	3259					0.0743656411802931
ESATLSEKRRR	11	Unmodified						0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	444.916263	1331.72696	1.176	0.00052321	2.2952	0.0010212	3.4712	0.0015444	444.9164350347764	22.501	0.048189	22.501	22.477	22.525	0	1434	43	0.75435036	0.025954425	0.75435036	457.9046		15.754852	-0.0048896	0.0011939	-0.00016728	NaN	0.56539	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8412.1			4161	3049	2466	2504							0.0743656411802931
ESEGLSLLNV	10	Unmodified	_ESEGLSLLNV_					0	0	0		ENST00000530928.5_1_11:65630557-65632047:+|nuORF;ENSG00000172732|ENST00000308110|MUS81	ENST00000530928.5_1_11:65630557-65632047:+|nuORF	ENST00000530928.5_1_11:65630557-65632047:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7796788299501	2	530.779679	1059.5448	1.9119	0.0010148	-7.0238	-0.0037281	-5.1118	-0.0027133	530.7752205617454	17.189	0.1199	17.189	17.189	17.309	0	1242	79	0.87260187	0.047909796	0.87260187	354.05646	0	19.4393						150	6	2	NaN	NaN	NaN	0.53991	1	11070	11070		17.799	2.6236	1	19398			4162	4849	2467	2505	3260	3260					0.01741411652574243
ESESSSYFHK	10	Unmodified	_ESESSSYFHK_					0	0	0			REV__ENST00000483060.1_1_1:67091531-67109432:+|nuORF	REV__ENST00000483060.1_1_1:67091531-67109432:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.76201739305	2	600.762017	1199.50948	0.60399	0.00036285	-6.8777	-0.0041319	-6.2737	-0.003769	600.7606971360319	20.959	0.048149	20.945	20.897	20.945	-0.014088	1221	88	0.885486	0.05331379	0.88396657	358.74573	0	21.599548						113	3	2	NaN	NaN	NaN	0.74854	1	15801	15801		4.7291	0.76056	1	14417	+		4163	9266	2468	2506	3261	3261					-0.08229250875251637
ESFAALAL	8	Unmodified	_ESFAALAL_					0	0	0			REV__ENSG00000184502|ENST00000329402|GAST	REV__ENSG00000184502|ENST00000329402|GAST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4403458993999	1	821.440346	820.433069	1.7991	0.0014779	1.0614	0.00087191	2.8605	0.0023498	821.4411817201692	28.894	0.072384	28.894	28.87	28.943	0	462	49	1.3447032	0.028652906	1.3447032	273.82852	0	5.834717						116	4	3	NaN	NaN	NaN	0.62311	1	5026	5026		23.85	1.7241	1	12975	+		4164	10929	2469	2507	3262	3262					0.015670220860783957
ESFDGSVRAR	10	Unmodified	_ESFDGSVRAR_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2781689837501	2	562.278169	1122.54179	1.5461	0.00086934	-0.37615	-0.0002115	1.1699	0.00065784	562.2780938963989	13.108	0.21616	13.108	13.084	13.3	0	1275	40	0.85233563	0.02396655	0.85233563	345.58432	0	9.717377						177	10	3	NaN	NaN	NaN	0.31689	1	13788	13788		27.046	15.876	1	22745			4165	1986	2470	2508	3263	3263					-0.014584186815682187
ESFDGSVRAR	10	Unmodified	_ESFDGSVRAR_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.2781689837501	2	562.278169	1122.54179	1.1539	0.00064882	-0.63191	-0.00035531	0.522	0.00029351	562.277839064831	13.134	0.16772	13.124	13.076	13.244	-0.00947	1272	43	0.854179	0.025808692	0.8526596	346.33173	0	10.464294						160	8	3	NaN	NaN	NaN	0.31689	1	13374	13374		27.046	7.8829	1	19439			4166	1986	2470	2508	3264	3264					-0.014584186815682187
ESFDGSVRAR	10	Unmodified	_ESFDGSVRAR_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.18787147803334	3	375.187871	1122.54179	1.4329	0.0005376	-0.57761	-0.00021671	0.85528	0.00032089	375.1876206895974	13.134	0.1198	13.124	13.076	13.196	-0.00947	1467	34	0.7339432	0.020420492	0.7324238	446.36728	0	12.4192505						76	6	2	NaN	NaN	NaN	0.24484	1	13375	13375		20.936	7.2985	1	8987			4167	1986	2470	2508	3265	3265					-0.014584186815682187
ESFETFINKR	10	Unmodified	_ESFETFINKR_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.21906015609994	3	424.21906	1269.63535	2.0725	0.00087919	-1.3654	-0.00057924	0.70707	0.00029995	424.2185735294981	19.346	0.048059	19.332	19.308	19.356	-0.014141	1482	31	0.72465914	0.018573165	0.7231397	440.10202	0	11.279907						45	3	2	NaN	NaN	NaN	0.73444	1	17414	17414		4.6175	2.919	1	2783.2			4168	3240	2471	2509	3266	3266					0.011318807008365184
ESFFEGKNM	9	Unmodified	_ESFFEGKNM_					0	0	0		nc|ENSG00000113504|Q9Y666-2|SLC12A7;ENSG00000113504|ENST00000264930|SLC12A7	nc|ENSG00000113504|Q9Y666-2|SLC12A7	nc|ENSG00000113504|Q9Y666-2|SLC12A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.4717223823	1	1088.47172	1087.46445	1.9447	0.0021168	-9.1516	-0.0099612	-7.2069	-0.0078445	1088.462467106725	28.798	0.2172	28.798	28.774	28.991	0	135	76	1.5387528	0.044261456	1.5387528	312.07373	0	8.976654						347	10	3	NaN	NaN	NaN	0.16171	1	12259	12259		27.789	1.0573	1	54107			4169	1917	2472	2510	3267	3267					-0.07578772942110845
ESFFREKCSAQ	11	Unmodified	_ESFFREKCSAQ_					0	0	0			REV__ENST00000591611.5_1_17:57955667-57970063:-|nuORF	REV__ENST00000591611.5_1_17:57955667-57970063:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.5398049178334	3	444.539805	1330.59759	0.35428	0.00015749	3.1956	0.0014206	3.5499	0.0015781	444.87597938803145	35.023	0.096508	35.023	34.999	35.096	0	1578	37	0.6651217	0.022365391	0.6651217	403.74466	0	13.576324						129	5	5	NaN	NaN	NaN	0.76654	1	19259	19259		0.88464	0.25291	1	8960.6	+		4170	9036	2473	2511	3268	3268					-0.05448953556242486
ESGEEVVVLL	10	Unmodified	_ESGEEVVVLL_					0	0	0		ENSG00000189298|ENST00000252211|ZKSCAN3;ENSG00000187626|ENST00000377294|ZKSCAN4	ENSG00000189298|ENST00000252211|ZKSCAN3	ENSG00000189298|ENST00000252211|ZKSCAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2898793755	2	537.289879	1072.56521	1.6111	0.00086562	1.674	0.00089943	3.2851	0.0017651	537.2918070917225	29.522	0.12073	29.522	29.474	29.594	0	1269	67	0.8560222	0.04055661	0.8560222	347.27515	0	16.453156						195	6	3	NaN	NaN	NaN	0.21269	1	11678	11678		34.439	0.74048	1	21775			4171	5513	2474	2512	3269	3269					0.03182582312388149
ESGGASVISTR	11	Unmodified	_ESGGASVISTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2725522896	2	532.272552	1062.53055	0.88138	0.00046913	-1.941	-0.0010331	-1.0596	-0.00056398	532.2714307819675	14.021	0.16789	14.01	13.938	14.106	-0.010672	1299	46	0.8375814	0.027680635	0.83606195	339.83472	0	11.230957						176	8	2	NaN	NaN	NaN	0.055983	1	10977	10977		48.319	21.359	1	30951			4172	1210	2475	2513	3270	3270					0.0017875922426355828
ESGPSIVHR	9	Unmodified	_ESGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	327.8419241216	3	327.841924	980.503943	1.2015	0.00039389	-1.1362	-0.00037249	0.065271	2.1399E-05	327.84160156041213	12.604	0.21611	12.604	12.532	12.748	0	1530	49	0.6949163	0.029768705	0.6949163	423.37247	0	18.136353						194	10	3	NaN	NaN	NaN	0.25448	1	7901	7901		19.336	14.148	1	20984			4173	841	2476	2514	3271	3271					0.012911151236153273
ESGPSIVHR	9	Unmodified	_ESGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.25924794910003	2	491.259248	980.503943	1.7878	0.00087827	-1.4481	-0.00071141	0.33965	0.00016686	491.25875270275986	12.604	0.43215	12.604	12.46	12.892	0	1317	109	0.8265074	0.06651634	0.8265074	335.70032	0	27.016754						1058	19	4	NaN	NaN	NaN	8.6905E-19	1	7902	7902		165.48	106.89	1	888000			4174	841	2476	2514	3272	3272					0.012911151236153273
ESGPSIVHR	9	Unmodified	_ESGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.25924794910003	2	491.259248	980.503943	1.4679	0.00072114	-0.63346	-0.00031119	0.83448	0.00040995	491.2591119584486	12.606	0.43225	12.597	12.477	12.909	-0.0088415	1317	103	0.8265074	0.06282091	0.82498795	335.70032	0	25.515808						1109	19	5	NaN	NaN	NaN	0.0028258	1	7733	7733		108.53	66.747	1	897470			4175	841	2476	2514	3273	3273					0.012911151236153273
ESIDQYIER	9	Unmodified	_ESIDQYIER_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7802101462	2	576.78021	1151.54587	1.7616	0.0010161	-1.6788	-0.0009683	0.082805	4.776E-05	576.7785138069793	19.997	0.072111	19.997	19.997	20.069	0	1221	61	0.885486	0.03680587	0.885486	358.9156	0	14.91861						120	4	3	NaN	NaN	NaN	0.23499	1	14856	14856		23.086	11.037	1	13538			4176	128	2477	2515	3274	3274					-0.023843739785206708
ESIDQYIER	9	Unmodified	_ESIDQYIER_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7802101462	2	576.78021	1151.54587	1.4132	0.00081513	-0.61918	-0.00035713	0.79406	0.000458	576.7804594946468	19.996	0.096302	19.982	19.958	20.054	-0.014141	1221	52	0.885486	0.03127992	0.88396657	358.9156	0	12.678772						118	5	3	NaN	NaN	NaN	0.19268	1	14351	14351		25.801	14.631	1	14107			4177	128	2477	2515	3275	3275					-0.023843739785206708
ESLDFRIKQN	10	Unmodified	_ESLDFRIKQN_					0	0	0		ENST00000297792.9_1_6:18222258-18222495:+|nuORF	ENST00000297792.9_1_6:18222258-18222495:+|nuORF	ENST00000297792.9_1_6:18222258-18222495:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3304015195001	2	625.330402	1248.64625	1.6688	0.0010435	-11.476	-0.007176	-9.8068	-0.0061325	625.3234028046535	25.829	0.16891	25.817	25.672	25.841	-0.011602	1161	64	0.9222442	0.03854406	0.92072475	373.4707	0	15.608734						188	8	2	NaN	NaN	NaN	0.73444	1	16997	16997		5.6942	1.384	1	36530			4178	6403	2478	2516	3276	3276					0.031872830751581205
ESLPLSVRS	9	Unmodified	_ESLPLSVRS_					0	0	0		ENST00000322030.12_1_9:131457086-131457191:+|nuORF	ENST00000322030.12_1_9:131457086-131457191:+|nuORF	ENST00000322030.12_1_9:131457086-131457191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5469362359001	1	987.546936	986.53966	1.2771	0.0012612	-1.7988	-0.0017764	-0.5217	-0.0005152	987.5460116311996	30.414	0.24128	30.407	30.263	30.504	-0.0064106	231	64	1.4820169	0.037290215	1.4804975	300.95224	0	7.57251						244	11	3	NaN	NaN	NaN	0.20577	1	7939	7939		24.961	6.9913	1	34260			4179	6483	2479	2517	3277	3277					0.04585152580625618
ESLVSCESQL	10	Unmodified	_ESLVSCESQL_					0	0	0			REV__ENSG00000126467|ENST00000246801|TSKS	REV__ENSG00000126467|ENST00000246801|TSKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7553464539001	2	547.755346	1093.49614	1.3848	0.00075853	7.6523	0.0041916	9.0371	0.0049501	547.7594602885008	24.454	0.33764	24.454	24.333	24.671	0	1284	130	0.8468043	0.07922262	0.8468043	343.45218	0	32.13159						671	15	4	NaN	NaN	NaN	0.17937	1	12533	12533		37.302	4.8496	1	194450	+		4180	9417	2480	2518	3278	3278					-0.04686824978830373
ESNDLEISY	9	Unmodified	_ESNDLEISY_					0	0	0			REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.237843805	2	535.237844	1068.46113	0.75035	0.00040161	-5.7842	-0.0030959	-5.0339	-0.0026943	535.236216728313	28.145	0.096577	28.137	28.112	28.209	-0.0089798	1248	94	0.8689189	0.057120144	0.86739945	352.52435	0	23.17389						219	5	3	NaN	NaN	NaN	0.45297	1	11196	11196		11.548	1.4969	1	22468	+		4181	13462	2481	2519	3279	3279					-0.07035744515133047
ESNIIASRLY	10	Unmodified	_ESNIIASRLY_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3142201390501	2	583.31422	1164.61389	1.509	0.0008802	1.1693	0.00068206	2.6782	0.0015623	583.3147671040886	24.429	0.14479	24.417	24.393	24.537	-0.012749	1197	79	0.9001988	0.047780514	0.8986794	364.83072	0	19.36438						211	7	3	NaN	NaN	NaN	0.33935	1	14778	14778		26.115	1.5529	1	64888			4182	6095	2482	2520	3280	3280					0.03816495672140263
ESPAGDRECQ	10	Unmodified	_ESPAGDRECQ_					0	0	0		nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.22474481725	2	546.224745	1090.43494	0.84048	0.00045909	-8.3187	-0.0045439	-7.4782	-0.0040848	546.7205249720153	30.825	0.096508	30.825	30.801	30.897	0	1302	64	0.8357362	0.038736105	0.8357362	338.97504	0	15.711365						118	5	2	NaN	NaN	NaN	0.64611	1	12399	12399		11.739	4.1985	1	13620			4183	4423	2483	2521	3281	3281					-0.10666336958274769
ESPCVSVECM	10	Unmodified	_ESPCVSVECM_					0	0	0			REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2114029389501	2	542.211403	1082.40825	1.5385	0.00083418	-2.8825	-0.0015629	-1.344	-0.00072872	542.2106253008934	21.537	0.16863	21.523	21.475	21.643	-0.014004	1299	55	0.8375814	0.03320414	0.83606195	339.75485	0	13.468872						219	8	5	NaN	NaN	NaN	0.69717	1	11754	11754		8.2448	1.2605	1	31591	+		4184	12090	2484	2522	3282	3282					-0.12965485165454993
ESPCVSVECM	10	Unmodified						0	0	0			REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.211403	1082.40825	1.5826	0.00085813	-1.011	-0.00054818	0.57163	0.00030995	542.2114373476209	21.537	0.12049	21.537	21.488	21.609	0	1296	46	0.8394264	0.027674615	0.8394264	340.50323		11.225891	0.0070034	0.0010898	0.0016822	NaN	8.2448	207	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31017	+		4185	12090	2484	2522							-0.12965485165454993
ESPCVSVECM	10	Unmodified						0	0	0			REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.211403	1082.40825	1.5385	0.00083418	-2.8825	-0.0015629	-1.344	-0.00072872	542.2106253008934	21.537	0.16863	21.523	21.475	21.643	-0.014004	1299	55	0.8375814	0.03320414	0.83606195	339.75485		13.468872	-0.0070034	-0.00093962	-0.0016822	NaN	8.2448	219	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31591	+		4186	12090	2484	2522							-0.12965485165454993
ESPLNNFLL	9	Unmodified	_ESPLNNFLL_					0	0	0		ENST00000465695.1_1_10:75532322-75533104:+|nuORF;nc|ENSG00000196968|Q495W5-2|FUT11;ENSG00000196968|ENST00000372841|FUT11	ENST00000465695.1_1_10:75532322-75533104:+|nuORF	ENST00000465695.1_1_10:75532322-75533104:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5516872628	1	1046.55169	1045.54441	1.9111	0.0020001	-3.0812	-0.0032246	-1.1701	-0.0012245	1046.5488105244685	28.532	0.16897	28.532	28.46	28.629	0	135	67	1.5387528	0.03894806	1.5387528	312.23047	0	7.903015						175	8	2	NaN	NaN	NaN	0.39244	1	10451	10451		14.042	3.4366	1	12505			4187	5668	2485	2523	3283	3283					0.023460367233838042
ESQSPDTTIQR	11	Unmodified	_ESQSPDTTIQR_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3045806995	2	631.304581	1260.59461	1.5903	0.001004	-0.91064	-0.00057489	0.67965	0.00042907	631.3040424123562	13.228	0.1682	13.228	13.18	13.349	0	1164	70	0.9204082	0.042251408	0.9204082	372.6885	0	17.108307						207	8	4	NaN	NaN	NaN	0.066897	1	18011	18011		45.55	23.779	1	20094			4188	945	2486	2524	3284	3284					-0.025265054094461448
ESQSPDTTIQR	11	Unmodified	_ESQSPDTTIQR_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000513944.5_1_5:72144220-72147067:+|nuORF;ENST00000518279.5_1_5:72112751-72147067:+|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3045806995	2	631.304581	1260.59461	1.1298	0.00071326	-0.94421	-0.00059608	0.18562	0.00011718	631.3034646262497	13.206	0.14373	13.196	13.172	13.315	-0.010098	1164	43	0.9204082	0.025705755	0.91888875	372.6885	0	10.408691						175	7	4	NaN	NaN	NaN	0.020353	1	17233	17233		62.076	28.65	1	19677			4189	945	2486	2524	3285	3285					-0.025265054094461448
ESRIQHMLL	9	Unmodified	_ESRIQHMLL_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8055080374501	2	563.805508	1125.59646	1.7147	0.00096676	7.2469	0.0040858	8.9616	0.0050526	563.8090957014234	28.75	0.096531	28.75	28.701	28.798	0	1233	43	0.87812483	0.025764108	0.87812483	356.02893	0	10.445862						88	5	3	NaN	NaN	NaN	0.51576	1	13920	13920		8.962	0.67169	1	9930.2			4190	1655	2487	2525	3286	3286					0.038688768654765227
ESRIQHMLL	9	Unmodified						0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.805508	1125.59646	1.2176	0.00068647	7.7161	0.0043504	8.9337	0.0050368	563.8099686457631	28.749	0.096529	28.74	28.716	28.813	-0.0083504	1233	82	0.87812483	0.049653053	0.8766054	356.02893		20.13147	-0.0045585	0.00022121	-0.00075972	NaN	8.962	103	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9115.4			4191	1655	2487	2525							0.038688768654765227
ESRNTLTYA	9	Unmodified	_ESRNTLTYA_					0	0	0		nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF;ENSG00000196169|ENST00000389916|KIF19	nc|ENSG00000196169|Q2TAC6-3|KIF19	nc|ENSG00000196169|Q2TAC6-3|KIF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5163643889998	1	1054.51636	1053.50909	1.3393	0.0014123	-8.0145	-0.0084514	-6.6751	-0.007039	1054.5077758329783	38.251	0.24025	38.251	38.179	38.42	0	189	79	1.5068626	0.04610765	1.5068626	305.7295	0	9.354828						434	11	4	NaN	NaN	NaN	0.18779	1	10782	10782		26.115	1.7147	1	70566			4192	5605	2488	2526	3287	3287					-0.015526258044474162
ESSAGGSFTVR	11	Unmodified	_ESSAGGSFTVR_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000436135.1_1_1:158493653-158493989:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2647272575001	2	549.264727	1096.5149	1.2256	0.0006732	-6.3627	-0.0034948	-5.1371	-0.0028216	549.2622537357274	14.957	0.24023	14.957	14.909	15.15	0	1263	52	0.85970795	0.031320512	0.85970795	348.67383	0	12.702759						172	11	2	NaN	NaN	NaN	0.43114	1	12680	12680		20.936	9.7659	1	20948			4193	1139;909	2489	2527	3288	3288					-0.029495272927533733
ESSNSSNG	8	Unmodified	_ESSNSSNG_					0	0	0			REV__PDZD2|p.N268Wfs*25|1|0.22|ENSG00000133401|chr5:31983478-31983479|AA/-|frameshift_variant	REV__PDZD2|p.N268Wfs*25|1|0.22|ENSG00000133401|chr5:31983478-31983479|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.2958665067001	1	781.295867	780.28859	1.1189	0.00087416	6.5067	0.0050837	7.6256	0.0059579	781.3023198516053	35.215	0.16901	35.215	35.167	35.336	-4.5776E-05	624	70	1.247731	0.041428804	1.2462115	254.29674	0	8.443512						265	8	4	NaN	NaN	NaN	0.84782	1	4409	4409		0.92586	0	1	26216	+		4194	9567	2490	2528	3289	3289					-0.11034271131836704
ESSTMERPQ	9	Unmodified	_ESSTMERPQ_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.73748805175	2	532.737488	1063.46042	1.7696	0.00094273	6.7302	0.0035854	8.4998	0.0045282	532.742281984949	18.362	0.072065	18.348	18.348	18.42	-0.013948	1248	61	0.8689189	0.036849678	0.86739945	352.54538	0	14.950989						117	4	3	NaN	NaN	NaN	0.58159	1	11005	11005		6.2502	2.6804	1	7228.2	+		4195	9440;13065	2491	2529	3290	3290					-0.06876862435842668
ESSTMERPQ	9	Unmodified						0	0	0			REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.737488	1063.46042	2.4278	0.0012934	3.5884	0.0019117	6.0162	0.0032051	532.7402076107714	18.34	0.096073	18.34	18.316	18.412	0	1248	58	0.8689189	0.03500533	0.8689189	352.54538		14.202637	-0.0036084	-0.0010892	0.00075972	NaN	6.2502	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6906.8	+		4196	9440;13065	2491	2529							-0.06876862435842668
ESSTMERPQ	9	Unmodified						0	0	0			REV__nc|ENSG00000127603|Q9UPN3-5|MACF1;REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.737488	1063.46042	1.7696	0.00094273	6.7302	0.0035854	8.4998	0.0045282	532.742281984949	18.362	0.072065	18.348	18.348	18.42	-0.013948	1248	61	0.8689189	0.036849678	0.86739945	352.54538		14.950989	0.0036084	0.0022583	-0.00075972	NaN	6.2502	117	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7228.2	+		4197	9440;13065	2491	2529							-0.06876862435842668
ESTDGLIW	8	Unmodified	_ESTDGLIW_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.435988803	1	920.435989	919.428712	1.7983	0.0016553	0.27748	0.0002554	2.0758	0.0019107	920.436324049609	28.508	0.26548	28.508	28.46	28.725	0	354	91	1.4090419	0.053529978	1.4090419	286.4208	0	10.881226						409	12	4	NaN	NaN	NaN	0.27293	1	6396	6396		44.247	2.7868	1	57819			4198	5958	2492	2530	3291	3291					-0.03422487127477325
ESTHENSYW	9	Unmodified	_ESTHENSYW_					0	0	0		ENST00000338977.5_3_4:436243-436321:-|nuORF	ENST00000338977.5_3_4:436243-436321:-|nuORF	ENST00000338977.5_3_4:436243-436321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7332599536	2	576.73326	1151.45197	2.0365	0.0011745	-10.132	-0.0058435	-8.0955	-0.0046689	576.727602639775	19.852	0.38452	19.852	19.804	20.189	0	1242	43	0.87260187	0.025778055	0.87260187	353.69363	0	10.448669						426	17	4	NaN	NaN	NaN	0.36492	1	14846	14846		15.175	0	1	80791			4199	6538	2493	2531	3292	3292					-0.11770093080804145
ESTLHLVLR	9	Unmodified	_ESTLHLVLR_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.3140231738	2	534.314023	1066.61349	1.9308	0.0010316	-1.7576	-0.00093912	0.17318	9.253E-05	534.3131752600608	19.3	0.11993	19.3	19.276	19.396	0	1221	43	0.885486	0.025758564	0.885486	359.2536	0	10.450592						105	6	2	NaN	NaN	NaN	0.026469	1	11424	11424		63.731	13.769	1	21850			4200	3457	2494	2532	3293	3293					0.08285120742925756
ESTLHLVLR	9	Unmodified	_ESTLHLVLR_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.3140231738	2	534.314023	1066.61349	1.1053	0.00059056	-2.608	-0.0013935	-1.5027	-0.00080291	534.3126779158223	19.394	0.12013	19.38	19.332	19.452	-0.014141	1224	49	0.883646	0.029451072	0.88212657	358.50708	0	11.9487						157	6	3	NaN	NaN	NaN	0.024221	1	11155	11155		66.656	29.354	1	24123			4201	3457	2494	2532	3294	3294					0.08285120742925756
ESTPITAVK	9	Unmodified	_ESTPITAVK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.26620731394996	2	473.266207	944.517862	0.94911	0.00044918	-3.4866	-0.0016501	-2.5374	-0.0012009	473.2644169634981	15.34	0.095818	15.328	15.304	15.4	-0.012202	1377	52	0.7895419	0.03144282	0.78802246	320.8551	0	12.777771						71	5	2	NaN	NaN	NaN	0.62869	1	6794	6794		4.3102	1.525	1	5614.6			4202	5238	2495	2533	3295	3295					0.043383478320379254
ESTPITAVK	9	Unmodified						0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.266207	944.517862	1.3864	0.00065615	-1.986	-0.00093993	-0.59962	-0.00028378	473.2650579070595	15.534	0.16809	15.534	15.486	15.654	0	1344	58	0.8098828	0.03512293	0.8098828	329.12128		14.273285	0.10299	0.0002229	0.01093	NaN	4.3102	186	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26613			4203	5238	2495	2533							0.043383478320379254
ESVAEASLL	9	Unmodified	_ESVAEASLL_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4778536177001	1	918.477854	917.470577	1.2286	0.0011284	-0.87475	-0.00080344	0.35382	0.00032498	918.4774147828697	22.38	0.12028	22.366	22.342	22.462	-0.013733	345	49	1.4143922	0.028531194	1.4128729	287.51746	0	5.7998047						147	6	2	NaN	NaN	NaN	0.043119	1	6236	6236		49.833	8.0484	1	18942	+		4204	11209	2496	2534	3296	3296					0.008540685610569199
ESVAISPQL	9	Unmodified	_ESVAISPQL_					0	0	0		KDELR1|p.L132S|1|0.37|ENSG00000105438|chr19:48384439-48384439|A/G|missense_variant	KDELR1|p.L132S|1|0.37|ENSG00000105438|chr19:48384439-48384439|A/G|missense_variant	KDELR1|p.L132S|1|0.37|ENSG00000105438|chr19:48384439-48384439|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.25838228185006	2	472.258382	942.502212	1.388	0.0006555	-4.4639	-0.0021081	-3.0759	-0.0014526	472.25618138803975	23.73	0.09642	23.73	23.682	23.778	0	1293	52	0.84127116	0.03136462	0.84127116	341.88742	0	12.746399						133	5	3	NaN	NaN	NaN	0.042816	1	6876	6876		49.961	5.3228	1	15179			4205	7831	2497	2535	3297	3297					0.028660613150123027
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.79840289935	2	588.798403	1175.58225	1.185	0.00069775	-0.77983	-0.00045916	0.40521	0.00023859	588.7976059749622	12.964	0.19221	12.964	12.916	13.108	0	1161	40	0.9222442	0.023868322	0.9222442	373.7244	0	9.672241						166	9	3	NaN	NaN	NaN	0.075094	1	15663	15663		49.394	27.623	1	17349			4206	2462	2498	2536	3298	3298					0.0014850291818220285
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.8680274217666	3	392.868027	1175.58225	0.92476	0.00036331	-0.21997	-8.6421E-05	0.70479	0.00027689	392.8675894345062	12.964	0.024026	12.964	12.94	12.964	0	1401	34	0.77473325	0.020367384	0.77473325	470.91733	0	12.380188						39	2	2	NaN	NaN	NaN	0.60686	1	15664	15664		8.3538	1.9238	1	4792.9			4207	2462	2498	2536	3299	3299					0.0014850291818220285
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.8680274217666	3	392.868027	1175.58225	1.0887	0.00042772	4.0102	0.0015755	5.0989	0.0020032	392.870494527595	13.012	0.048028	13.012	13.012	13.06	0	1398	28	0.77658504	0.016666055	0.77658504	472.04288	0	10.130341						38	3	2	NaN	NaN	NaN	0.64158	1	15666	15666		6.6174	2	1	3792.7			4208	2462	2498	2536	3300	3300					0.0014850291818220285
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.79840289935	2	588.798403	1175.58225	0.94642	0.00055725	-10.836	-0.0063804	-9.89	-0.0058232	588.7907216356878	12.966	0.19175	12.957	12.837	13.028	-0.00947	1242	49	0.87260187	0.02945429	0.8710824	353.6077	0	11.935852						181	9	3	NaN	NaN	NaN	0.4422	1	15091	15091		21.85	10.112	1	16991			4209	2462	2498	2536	3301	3301					0.0014850291818220285
ESVDPKNYPK	10	Unmodified	_ESVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.79840289935	2	588.798403	1175.58225	0.9385	0.00055258	0.18191	0.00010711	1.1204	0.00065969	588.7986521361432	12.966	0.11984	12.957	12.909	13.028	-0.00947	1161	64	0.9222442	0.038539886	0.92072475	373.7244	0	15.617676						171	6	3	NaN	NaN	NaN	0.23201	1	15092	15092		32.778	8.216	1	18963			4210	2462	2498	2536	3302	3302					0.0014850291818220285
ESVFLVLK	8	Unmodified	_ESVFLVLK_					0	0	0		RPS6KC1|p.Q405K|1|0.2|ENSG00000136643|chr1:213232243-213232243|C/A|missense_variant	RPS6KC1|p.Q405K|1|0.2|ENSG00000136643|chr1:213232243-213232243|C/A|missense_variant	RPS6KC1|p.Q405K|1|0.2|ENSG00000136643|chr1:213232243-213232243|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5607953861002	1	934.560795	933.553519	1.4054	0.0013134	-0.37746	-0.00035276	1.0279	0.00096066	934.5601764865357	34.276	0.096474	34.276	34.252	34.348	0	261	79	1.4642475	0.046239972	1.4642475	297.5762	0	9.397278						128	5	2	NaN	NaN	NaN	0.54545	1	6701	6701		28.667	1.935	1	18533			4211	13666	2499	2537	3303	3303					0.08408430079714435
ESVGGRVAER	10	Unmodified	_ESVGGRVAER_					0	0	0		nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-3|LIMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2807116727	2	530.280712	1058.54687	0.99681	0.00052859	-1.0394	-0.00055118	-0.042599	-2.2589E-05	530.2803776205332	11.454	0.19201	11.446	11.398	11.59	-0.0075302	1284	31	0.8468043	0.018440783	0.8452849	343.5933	0	7.4823914						123	9	2	NaN	NaN	NaN	0.58645	1	10793	10793		15.822	2.8191	1	12252			4212	572	2500	2538	3304	3304					0.01993885181036603
ESVREWEM	8	Unmodified	_ESVREWEM_					0	0	0		ENSG00000164040|ENST00000296425|PGRMC2;nc|ENSG00000164040|O15173-2|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.237123911	2	533.237124	1064.45969	2.0319	0.0010835	-1.8661	-0.00099505	0.16586	8.8444E-05	533.2364440287447	19.66	0.19213	19.66	19.612	19.804	0	1254	46	0.8652351	0.027635753	0.8652351	351.0466	0	11.212494						192	9	3	NaN	NaN	NaN	0.19587	1	11309	11309		50.315	31.197	1	23469			4213	4283	2501	2539	3305	3305					-0.06995657084894447
ESVREWEM	8	Unmodified	_ESVREWEM_					0	0	0		ENSG00000164040|ENST00000296425|PGRMC2;nc|ENSG00000164040|O15173-2|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.237123911	2	533.237124	1064.45969	1.0257	0.00054694	-1.4877	-0.00079329	-0.46201	-0.00024636	533.2363785819007	19.683	0.21661	19.669	19.621	19.837	-0.014141	1257	40	0.86339295	0.023950994	0.8618735	350.29916	0	9.717499						212	10	4	NaN	NaN	NaN	0.26128	1	11048	11048		45.165	24.609	1	23226			4214	4283	2501	2539	3306	3306					-0.06995657084894447
ESVREWEM	8	Oxidation (M)	_ESVREWEM(Oxidation (M))_		ESVREWEM(1)		ESVREWEM(45)	0	0	1		ENSG00000164040|ENST00000296425|PGRMC2;nc|ENSG00000164040|O15173-2|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	ENSG00000164040|ENST00000296425|PGRMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.23458122205	2	541.234581	1080.45461	1.7198	0.00093083	-0.15299	-8.2803E-05	1.5668	0.00084802	541.2345888915414	15.846	0.23983	15.846	15.798	16.038	0	1254	61	0.8652351	0.036849678	0.8652351	350.9802	0	14.947968						223	11	2	NaN	NaN	NaN	0.26128	1	11985	11985		45.165	22.047	1	26383			4215	4283	2501	2540	3307	3307		460			-0.08239960947503278
ESVTVWIGI	9	Unmodified	_ESVTVWIGI_					0	0	0		IMPAD1|p.D174Gfs*21|1|0.16|ENSG00000104331|chr8:56980047-56980066|GTGTAGCATCAAGTGGGTCA/-|frameshift_variant	IMPAD1|p.D174Gfs*21|1|0.16|ENSG00000104331|chr8:56980047-56980066|GTGTAGCATCAAGTGGGTCA/-|frameshift_variant	IMPAD1|p.D174Gfs*21|1|0.16|ENSG00000104331|chr8:56980047-56980066|GTGTAGCATCAAGTGGGTCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.276575035	2	502.276575	1002.5386	1.7038	0.0008558	-6.7957	-0.0034133	-5.0919	-0.0025575	502.7738222495862	21.73	0.12044	21.73	21.657	21.778	0	1311	58	0.83019954	0.035069704	0.83019954	337.09744	0	14.239838						165	6	3	NaN	NaN	NaN	0.53206	1	8699	8699		8.2903	1.3059	1	16949			4216	7823	2502	2541	3308	3308					0.03742938211712499
ETADFKVYTK	10	Unmodified	_ETADFKVYTK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3086034449	2	601.308603	1200.60265	1.3667	0.00082179	-1.2111	-0.00072823	0.1556	9.3562E-05	601.3085386610696	15.678	0.12003	15.678	15.654	15.774	0	1164	37	0.9204082	0.022033453	0.9204082	372.89023	0	8.926544						126	6	3	NaN	NaN	NaN	0.0091449	1	16499	16499		72.358	51.845	1	12907			4217	5664	2503	2542	3309	3309					0.010376735779800583
ETADFKVYTK	10	Unmodified	_ETADFKVYTK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3086034449	2	601.308603	1200.60265	1.4849	0.00089286	-2.0887	-0.0012559	-0.60381	-0.00036308	601.3076878554292	15.676	0.14384	15.663	15.639	15.783	-0.012611	1161	37	0.9222442	0.022031128	0.92072475	373.63406	0	8.925598						153	7	3	NaN	NaN	NaN	0.075094	1	15851	15851		49.394	30.23	1	15836			4218	5664	2503	2542	3310	3310					0.010376735779800583
ETAEAYLGK	9	Unmodified	_ETAEAYLGK_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.24801456079996	2	491.248015	980.481476	1.7507	0.00086005	-2.6308	-0.0012924	-0.88003	-0.00043231	491.2469571019462	15.75	0.11996	15.75	15.726	15.846	0	1350	64	0.80618626	0.038811624	0.80618626	327.44666	0	15.764038						114	6	2	NaN	NaN	NaN	0.38313	1	7895	7895		14.425	6.1347	1	8836.6			4219	540	2504	2543	3311	3311					-0.009545290646656213
ETAEAYLGK	9	Unmodified	_ETAEAYLGK_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.488752655	1	981.488753	980.481476	1.4701	0.0014429	-10.25	-0.010061	-8.7803	-0.0086178	981.4811032581455	26.77	0.14481	26.759	26.711	26.856	-0.010645	207	70	1.496219	0.04082012	1.4946996	303.86212	0	8.290009						151	7	2	NaN	NaN	NaN	0.20577	1	7726	7726		24.961	0	1	18670			4220	540	2504	2543	3312	3312					-0.009545290646656213
ETAEAYLGK	9	Unmodified						0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	981.488753	980.481476	1.6882	0.0016569	-10.009	-0.0098238	-8.3209	-0.0081669	981.4808155606582	26.77	0.097004	26.77	26.722	26.819	0	207	70	1.496219	0.04082012	1.496219	303.86212		8.290009	0.0055207	0.00012004	0.00075972	NaN	24.961	146	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18283			4221	540	2504	2543							-0.009545290646656213
ETAIADAE	8	Unmodified	_ETAIADAE_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;CON__Q6IME9;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;CON__Q9R0H5;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q6NXH9	ENSG00000186049|ENST00000305748|KRT73	ENSG00000186049|ENST00000305748|KRT73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.3730541952	1	819.373054	818.365778	1.6341	0.001339	2.1275	0.0017433	3.7617	0.0030822	819.375478873599	24.454	0.096487	24.454	24.406	24.502	0	483	85	1.3321642	0.050153255	1.3321642	271.2864	0	10.213379						147	5	2	NaN	NaN	NaN	0.82797	1	4997	4997		5.4659	1.8926	1	9294.9		+	4222	214	2505	2544	3313	3313					-0.05067052915524073
ETAIADAE	8	Unmodified						0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;CON__Q6IME9;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;CON__Q9R0H5;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__Q6NXH9	ENSG00000186049|ENST00000305748|KRT73	ENSG00000186049|ENST00000305748|KRT73	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.373054	818.365778	1.6042	0.0013145	3.843	0.0031489	5.4472	0.0044633	819.3768594452691	24.478	0.096596	24.465	24.417	24.513	-0.012747	468	85	1.3411216	0.050153255	1.3396021	273.1105		10.213379	0.0055766	0.00062951	0.003719	NaN	5.4659	133	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8325.7		+	4223	214	2505	2544							-0.05067052915524073
ETALPGAFKTR	11	Unmodified	_ETALPGAFKTR_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.83003737875	2	595.830037	1189.64552	1.4357	0.00085546	-1.9049	-0.001135	-0.46913	-0.00027952	596.3294442984344	16.758	0.11991	16.758	16.71	16.83	0	1170	37	0.91673553	0.022040606	0.91673553	371.44116	0	8.930389						99	6	2	NaN	NaN	NaN	0.066897	1	16149	16149		45.55	18.504	1	10768			4224	1231	2506	2545	3314	3314					0.058284884260729086
ETALPGAFKTR	11	Unmodified	_ETALPGAFKTR_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.55578374136667	3	397.555784	1189.64552	1.8175	0.00072256	-1.2729	-0.00050607	0.54455	0.00021649	397.5554586802865	16.778	0.095881	16.765	16.741	16.837	-0.013294	1365	28	0.7969414	0.016646206	0.79542196	484.3501	0	10.116882						69	5	2	NaN	NaN	NaN	0.14414	1	15535	15535		27.103	14.002	1	6757			4225	1231	2506	2545	3315	3315					0.058284884260729086
ETALPGAFKTR	11	Unmodified	_ETALPGAFKTR_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.83003737875	2	595.830037	1189.64552	1.3598	0.00081023	-0.03503	-2.0872E-05	1.3248	0.00078936	595.8300180083475	16.802	0.16769	16.789	16.717	16.885	-0.013294	1173	37	0.91489893	0.022040606	0.9133795	370.69702	0	8.930389						120	8	3	NaN	NaN	NaN	0.2084	1	15536	15536		29.547	11.577	1	11006			4226	1231	2506	2545	3316	3316					0.058284884260729086
ETAMSFVAR	9	Unmodified	_ETAMSFVAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.25003432100004	2	506.250034	1010.48552	1.3466	0.0006817	-2.7188	-0.0013764	-1.3723	-0.00069471	506.2487941643318	19.082	0.1682	19.068	19.02	19.188	-0.014059	1299	49	0.8375814	0.029521227	0.83606195	340.0586	0	11.985626						186	8	3	NaN	NaN	NaN	0.060816	1	8818	8818		42.318	13.422	1	21496			4227	4223	2507	2546	3317	3317					-0.01930762842596323
ETASEAKR	8	Unmodified	_ETASEAKR_					0	0	0			REV__ENSG00000102038|ENST00000371121|SMARCA1	REV__ENSG00000102038|ENST00000371121|SMARCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	891.4530358507001	1	891.453036	890.445759	1.5306	0.0013645	-5.8378	-0.0052041	-4.3072	-0.0038397	891.447641326419	19.803	0.19247	19.789	19.693	19.885	-0.014141	381	115	1.3929803	0.06790578	1.3914609	283.29187	0	13.810089						271	9	2	NaN	NaN	NaN	0.54545	1	5816	5816		28.667	0.8777	1	29223	+		4228	8876	2508	2547	3318	3318					-0.0038456652166587446
ETCTLFKND	9	Unmodified	_ETCTLFKND_					0	0	0			REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7447817676001	2	535.744782	1069.47501	1.627	0.00087168	7.3234	0.0039235	8.9505	0.0047952	535.7484256454571	20.525	0.19251	20.525	20.477	20.67	0	1260	67	0.8615505	0.04054779	0.8615505	349.5307	0	16.450226						226	9	4	NaN	NaN	NaN	0.33629	1	11529	11529		16.584	1.1215	1	35731	+		4229	10381	2509	2548	3319	3319					-0.05694790287680007
ETCTLFKND	9	Unmodified						0	0	0			REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.744782	1069.47501	1.627	0.00087168	7.3234	0.0039235	8.9505	0.0047952	535.7484256454571	20.525	0.19251	20.525	20.477	20.67	0	1260	67	0.8615505	0.04054779	0.8615505	349.5307		16.450226	-0.18578	0.00024584	0.023822	NaN	16.584	226	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35731	+		4230	10381	2509	2548							-0.05694790287680007
ETCTLFKND	9	Unmodified						0	0	0			REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.744782	1069.47501	2.3661	0.0012676	6.842	0.0036656	9.2081	0.0049332	535.7481286484193	20.911	0.048149	20.897	20.897	20.945	-0.014086	1335	22	0.8154261	0.012931585	0.81390667	330.81805		5.246338	0.18578	-0.00027004	-0.023822	NaN	16.584	27	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1417.9	+		4231	10381	2509	2548							-0.05694790287680007
ETDENDQE	8	Unmodified	_ETDENDQE_					0	0	0			REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.17798320239996	2	490.177983	978.341413	0.95639	0.0004688	3.2997	0.0016174	4.2561	0.0020862	490.1796319907952	27.325	0.096519	27.315	27.267	27.363	-0.010124	1365	37	0.7969414	0.022191346	0.79542196	323.70145	0	9.013672						99	5	3	NaN	NaN	NaN	0.83211	1	7670	7670		4.9097	0.94122	1	8076.6	+		4232	8708	2510	2549	3320	3320					-0.14862357859692565
ETEETAILEFP	11	Unmodified	_ETEETAILEFP_					0	0	0			REV__nc|ENSG00000180354|Q8N3F0-4|MTURN	REV__nc|ENSG00000180354|Q8N3F0-4|MTURN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.80863323465	2	639.808633	1277.60271	0.90813	0.00058103	-0.73263	-0.00046875	0.17549	0.00011228	639.8083645039114	35.361	0.096485	35.361	35.289	35.385	0	1134	40	0.9387595	0.023842633	0.9387595	380.06445	0	9.652893						88	5	2	NaN	NaN	NaN	0.73455	1	18371	18371		5.1889	0.45981	1	7081.1	+		4233	10829	2511	2550	3321	3321					-0.02498371212686834
ETEPEKLELLK	11	Unmodified	_ETEPEKLELLK_					0	0	0			REV__ENST00000521431.1_1_1:227058946-227059051:+|nuORF	REV__ENST00000521431.1_1_1:227058946-227059051:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8690251535	2	664.869025	1327.7235	1.2186	0.00081024	-4.7081	-0.0031303	-3.4894	-0.00232	664.8661446975216	41.835	0.3364	41.835	41.714	42.051	0	1218	64	0.8873258	0.03861904	0.8873258	359.096	0	15.628906						442	15	3	NaN	NaN	NaN	0.76937	1	19230	19230		2.1026	0.40037	1	61662	+		4234	11856	2512	2551	3322	3322					0.07274456500817905
ETFLEPWFK	9	Unmodified	_ETFLEPWFK_					0	0	0		ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.802956961	2	598.802957	1195.59136	1.2445	0.0007452	-0.52708	-0.00031562	0.71741	0.00042959	598.8018393061337	28.653	0.072372	28.653	28.629	28.701	0	1107	67	0.9552588	0.040333807	0.9552588	387.0279	0	16.34143						113	4	3	NaN	NaN	NaN	0.33202	1	16333	16333		16.858	9.2707	1	9958.2			4235	707	2513	2552	3323	3323					0.0013889627450680564
ETFLEPWFK	9	Unmodified						0	0	0		ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.802957	1195.59136	0.90208	0.00054017	-0.62202	-0.00037247	0.28006	0.0001677	598.8024868020145	28.652	0.14478	28.644	28.596	28.74	-0.0083485	1110	52	0.95342636	0.031161964	0.9519069	386.28546		12.625427	-0.0045666	-4.6349E-05	-0.001676	NaN	16.858	117	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8400.2			4236	707	2513	2552							0.0013889627450680564
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7794818647001	2	529.779482	1057.54441	2.2592	0.0011969	-0.40167	-0.0002128	1.8575	0.00098406	529.7789033463357	13.637	0.096045	13.637	13.613	13.709	0	1269	43	0.8560222	0.025808692	0.8560222	347.3377	0	10.472076						83	5	2	NaN	NaN	NaN	0.54912	1	10993	10993		7.5876	1.8934	1	7003.2			4237	4814	2514	2553	3324	3324					0.017940367233904908
ETFSGVYKK	9	Unmodified						0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.779482	1057.54441	2.1442	0.0011359	-2.258	-0.0011962	-0.11385	-6.0316E-05	529.7798877858355	13.637	0.023983	13.627	13.603	13.627	-0.010098	1269	31	0.8560222	0.018428862	0.85450274	347.3377		7.4776306	-0.0047557	-0.0012935	-0.00075972	NaN	7.5876	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2082.1			4238	4814	2514	2553							0.017940367233904908
ETFSGVYKKL	10	Unmodified	_ETFSGVYKKL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3215138549001	2	586.321514	1170.62847	2.3013	0.0013493	-2.681	-0.0015719	-0.37971	-0.00022263	586.8218038161432	18.149	0.11996	18.149	18.125	18.245	0	1179	37	0.9112251	0.022045374	0.9112251	369.27722	0	8.9339905						90	6	3	NaN	NaN	NaN	0.2504	1	15511	15511		31.198	13.228	1	10120			4239	4814	2515	2554	3325	3325					0.049985678202801864
ETFSGVYKKL	10	Unmodified						0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	586.321514	1170.62847	2.1579	0.0012652	-1.1729	-0.0006877	0.98496	0.0005775	586.3217454379211	18.242	0.095892	18.228	18.18	18.276	-0.01395	1182	37	0.9093879	0.022047758	0.90786844	368.53268		8.934937	0.039528	0.00075674	-0.0016783	NaN	31.198	108	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8899.8			4240	4814	2515	2554							0.049985678202801864
ETFSSPDL	8	Unmodified	_ETFSSPDL_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.4043543235999	1	895.404354	894.397078	0.99122	0.00088754	-2.1897	-0.0019606	-1.1984	-0.0010731	895.4018787520051	33.961	0.12067	33.96	33.911	34.032	-0.0012474	381	46	1.3929803	0.026780725	1.3914609	283.2728	0	5.446045						127	6	3	NaN	NaN	NaN	0.40747	1	5871	5871		36.036	5.2452	1	9579.1			4241	4278	2516	2555	3326	3326					-0.05434479881432708
ETFSSPDL	8	Unmodified						0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	895.404354	894.397078	0.99185	0.00088811	-3.0196	-0.0027037	-2.0277	-0.0018156	895.4025632536949	33.938	0.14479	33.938	33.914	34.059	0	384	46	1.3911947	0.026786327	1.3911947	282.9097		5.4472046	-0.010827	-0.00037508	-0.00013306	NaN	36.036	129	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10977			4242	4278	2516	2555							-0.05434479881432708
ETGLDPLSL	9	Unmodified	_ETGLDPLSL_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4935036819	1	944.493504	943.486227	1.409	0.0013308	-1.4443	-0.0013641	-0.03521	-3.3256E-05	944.4920952785251	24.14	0.16895	24.14	24.044	24.213	0	345	40	1.4143922	0.023180246	1.4143922	287.40024	0	4.7101746						111	8	2	NaN	NaN	NaN	0.043119	1	6904	6904		49.833	0	1	6148.8			4243	3070	2517	2556	3327	3327					0.012223550780959158
ETGLDPLSL	9	Unmodified						0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.493504	943.486227	1.8387	0.0017366	-1.578	-0.0014905	0.26065	0.00024618	944.4921044357706	24.14	0.16889	24.127	24.055	24.224	-0.012749	342	49	1.4161754	0.028522015	1.4146559	287.76257		5.7955627	-0.0064768	-4.6902E-05	0.00013183	NaN	49.833	108	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6913.3			4244	3070	2517	2556							0.012223550780959158
ETGYVDLS	8	Unmodified	_ETGYVDLS_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.4043543236002	1	883.404354	882.397078	1.8529	0.0016369	3.5204	0.0031099	5.3733	0.0047468	883.4069132032286	54.596	0.12037	54.596	54.548	54.668	0	372	58	1.3983358	0.033907652	1.3983358	284.42044	0	6.89682						115	6	2	NaN	NaN	NaN	0.8439	1	5831	5831		3.1533	0	1	9993.5	+		4245	13253	2518	2557	3328	3328					-0.04882479881405288
ETGYVDLS	8	Unmodified	_ETGYVDLS_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.4043543236002	1	883.404354	882.397078	-0.02378	-2.1007E-05	4.469	0.003948	4.4452	0.003927	883.4086957918026	54.594	0.096359	54.593	54.569	54.666	-0.0006218	366	43	1.4019053	0.024983287	1.4003859	285.14645	0	5.0815735						81	5	2	NaN	NaN	NaN	0.8439	1	5709	5709		3.1533	0	1	6241.9	+		4246	13253	2518	2557	3329	3329					-0.04882479881405288
ETGYVDLS	8	Unmodified						0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	883.404354	882.397078	1.8529	0.0016369	3.5204	0.0031099	5.3733	0.0047468	883.4069132032286	54.596	0.12037	54.596	54.548	54.668	0	372	58	1.3983358	0.033907652	1.3983358	284.42044		6.89682	0.001345	-0.00037781	-0.001025	NaN	3.1533	115	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9993.5	+		4247	13253	2518	2557							-0.04882479881405288
ETGYVDLS	8	Unmodified						0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	883.404354	882.397078	-0.02378	-2.1007E-05	4.469	0.003948	4.4452	0.003927	883.4086957918026	54.594	0.096359	54.593	54.569	54.666	-0.0006218	366	43	1.4019053	0.024983287	1.4003859	285.14645		5.0815735	-0.001345	0.00046021	0.001025	NaN	3.1533	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6241.9	+		4248	13253	2518	2557							-0.04882479881405288
ETIGEILKK	9	Unmodified	_ETIGEILKK_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.8107819931001	2	515.810782	1029.60701	2.3618	0.0012182	-3.5148	-0.001813	-1.153	-0.00059474	515.8098123284373	17.789	0.16784	17.789	17.765	17.933	0	1290	64	0.84311575	0.038719356	0.84311575	342.22012	0	15.716156						173	8	2	NaN	NaN	NaN	0.12866	1	9775	9775		31.675	9.9044	1	49279			4249	4377	2519	2558	3330	3330					0.09339182791586609
ETIGKKFEK	9	Unmodified	_ETIGKKFEK_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.5413631419666	3	360.541363	1078.60226	2.1127	0.00076171	-0.77034	-0.00027774	1.3423	0.00048397	360.5412367852348	11.524	0.12007	11.524	11.428	11.548	0	1512	34	0.7060759	0.020453751	0.7060759	429.63083	0	12.445618						111	6	3	NaN	NaN	NaN	0.21451	1	11927	11927		17.582	8.0113	1	10535			4250	890	2520	2559	3331	3331					0.06610298648797652
ETIGKKFEK	9	Unmodified	_ETIGKKFEK_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.30840647965	2	540.308406	1078.60226	1.2176	0.00065789	-1.4863	-0.00080304	-0.26864	-0.00014515	540.3073577743183	11.622	0.24006	11.614	11.518	11.758	-0.0075302	1230	37	0.8799654	0.02208829	0.878446	356.96323	0	8.960236						193	11	2	NaN	NaN	NaN	0.030261	1	11622	11622		58.769	19.73	1	20940			4251	890	2520	2559	3332	3332					0.06610298648797652
ETIGKKFEKR	10	Unmodified	_ETIGKKFEKR_					0	0	0		XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant;ENSG00000079246|ENST00000392132|XRCC5	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.5750668179999	3	412.575067	1234.70337	2.4426	0.0010077	-3.1263	-0.0012898	-0.68375	-0.0002821	412.5743614491715	10.972	0.11983	10.972	10.924	11.044	0	1470	37	0.7320868	0.02227813	0.7320868	444.7481	0	13.534119						98	6	2	NaN	NaN	NaN	0.59152	1	17404	17404		15.475	5.271	1	8576.2			4252	890	2521	2560	3333	3333					0.09540750351493443
ETIHADSVAKR	11	Unmodified	_ETIHADSVAKR_					0	0	0		ENST00000473663.1_1_16:1989075-1991398:-|nuORF;ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.5544428262333	3	409.554443	1225.6415	1.7706	0.00072517	-2.4111	-0.00098746	-0.64043	-0.00026229	409.5531662087176	11.644	0.095964	11.644	11.62	11.716	0	1485	31	0.72280174	0.018575132	0.72280174	439.14322	0	11.285461						57	5	2	NaN	NaN	NaN	0.10804	1	17129	17129		38.881	19.289	1	5230.7			4253	5801	2522	2561	3334	3334					0.03770398932351782
ETIHADSVAKR	11	Unmodified	_ETIHADSVAKR_					0	0	0		ENST00000473663.1_1_16:1989075-1991398:-|nuORF;ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	ENST00000473663.1_1_16:1989075-1991398:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.5544428262333	3	409.554443	1225.6415	1.7368	0.00071129	1.2005	0.00049167	2.9372	0.001203	409.5553077920093	11.646	0.072021	11.638	11.638	11.71	-0.0075302	1485	31	0.72280174	0.018575132	0.7212823	439.1432	0	11.285461						50	4	2	NaN	NaN	NaN	0.25875	1	16445	16445		27.103	17.533	1	3682.9			4254	5801	2522	2561	3335	3335					0.03770398932351782
ETILASSGTDR	11	Unmodified	_ETILASSGTDR_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.290942008	2	575.290942	1148.56733	1.6486	0.00094844	-0.69403	-0.00039927	0.9546	0.00054917	575.2908965311489	15.438	0.096132	15.438	15.414	15.51	0	1239	40	0.87444305	0.023932874	0.87444305	354.4504	0	9.70105						74	5	2	NaN	NaN	NaN	0.26275	1	14757	14757		26.96	10.102	1	6946.7			4255	1360;4142	2523	2562	3336	3336					-0.0010098894981638296
ETINELEKI	9	Unmodified	_ETINELEKI_					0	0	0		tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7953288941501	2	544.795329	1087.5761	1.6057	0.0008748	-5.4133	-0.0029492	-3.8076	-0.0020744	544.7925902681517	19.442	0.26458	19.428	19.332	19.597	-0.014141	1254	79	0.8652351	0.04790461	0.86371565	350.9513	0	19.430756						424	12	3	NaN	NaN	NaN	0.054111	1	11980	11980		45.165	6.1258	1	73467			4256	13918	2524	2563	3337	3337					0.03581984686684336
ETINELEKI	9	Unmodified						0	0	0		tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	tr|U7SYB5|U7SYB5_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.795329	1087.5761	1.6797	0.0009151	-4.1319	-0.002251	-2.4522	-0.0013359	544.7930324217582	19.444	0.21596	19.444	19.348	19.564	0	1254	100	0.8652351	0.060779035	0.8652351	350.95126		24.652802	0.0079709	0.00068614	0.00075972	NaN	45.165	293	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67102			4257	13918	2524	2563							0.03581984686684336
ETIPLTAEKL	10	Unmodified	_ETIPLTAEKL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8213466794	2	557.821347	1113.62814	1.5493	0.0008642	-2.8791	-0.001606	-1.3299	-0.00074183	557.8194065975495	22.477	0.072247	22.477	22.453	22.525	0	1254	85	0.8652351	0.051550567	0.8652351	350.84854	0	20.903473						213	4	3	NaN	NaN	NaN	0.38087	1	13444	13444		24.393	9.9684	1	28872			4258	82	2525	2564	3338	3338					0.07587148100424201
ETIPLTAEKL	10	Unmodified	_ETIPLTAEKL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8213466794	2	557.821347	1113.62814	1.225	0.00068334	-1.9212	-0.0010717	-0.69619	-0.00038835	557.8205578503758	22.476	0.072325	22.462	22.438	22.511	-0.013733	1254	82	0.8652351	0.049706757	0.86371565	350.84854	0	20.155853						200	4	3	NaN	NaN	NaN	0.43797	1	13060	13060		22.026	4.0561	1	29944			4259	82	2525	2564	3339	3339					0.07587148100424201
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.3513339268501	2	624.351334	1246.68811	1.4453	0.00090236	-1.2648	-0.00078966	0.18052	0.00011271	624.3495083049837	15.15	0.072087	15.15	15.126	15.198	0	1107	31	0.9552588	0.01832366	0.9552588	386.84686	0	7.4204407						67	4	2	NaN	NaN	NaN	0.36359	1	17693	17693		23.353	8.0418	1	7634.9			4260	5142	2526	2565	3340	3340					0.07463838763669628
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3513339268501	2	624.351334	1246.68811	1.1768	0.00073472	-1.5987	-0.00099816	-0.42195	-0.00026344	624.3507651036197	15.172	0.07204	15.16	15.136	15.208	-0.012202	1107	31	0.9552588	0.01832366	0.9537394	386.84686	0	7.4204407						67	4	2	NaN	NaN	NaN	0.22541	1	16955	16955		28.296	5.2098	1	6371.4			4261	5142	2526	2565	3341	3341					0.07463838763669628
ETISSKNIISR	11	Unmodified	_ETISSKNIISR_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.56998144010004	3	416.569981	1246.68811	1.1887	0.0004952	-1.0153	-0.00042296	0.1734	7.2232E-05	416.5696493839147	15.148	0.096067	15.136	15.136	15.232	-0.012201	1437	34	0.7524962	0.020396113	0.75097674	457.09845	0	12.389496						74	5	2	NaN	NaN	NaN	0.29813	1	16956	16956		19.737	12.93	1	9464.8			4262	5142	2526	2565	3342	3342					0.07463838763669628
ETLFTHHGRH	10	Unmodified	_ETLFTHHGRH_					0	0	0			REV__nc|ENSG00000132256|Q9C035-6|TRIM5	REV__nc|ENSG00000132256|Q9C035-6|TRIM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.20737745533336	3	412.207377	1233.6003	1.4213	0.00058586	-1.1341	-0.00046747	0.2872	0.00011839	412.5411969608097	13.637	0.19177	13.627	13.555	13.747	-0.010098	1545	31	0.68561107	0.018615544	0.6840916	416.51785	0	11.309204						82	9	2	NaN	NaN	NaN	0.73801	1	16641	16641		5.4499	3.1118	1	5659	+		4263	9529	2527	2566	3343	3343					-0.007153173164169857
ETLLCYLEL	9	Unmodified	_ETLLCYLEL_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1096.5594747571	1	1096.55947	1095.5522	1.806	0.0019804	5.1877	0.0056887	6.9938	0.0076691	1096.5657859749872	28.725	0.14477	28.725	28.629	28.774	0	75	61	1.5741152	0.035328627	1.5741152	319.21594	0	7.1643066						113	7	2	NaN	NaN	NaN	0.36492	1	12655	12655		15.175	2.1725	1	8705.4			4264	4084	2528	2567	3344	3344					0.008244279286373057
ETLTDSFVL	9	Unmodified	_ETLTDSFVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5197184324	1	1024.51972	1023.51244	2.6008	0.0026646	-1.1167	-0.0011441	1.4841	0.0015205	1024.5182315409463	26.408	0.24133	26.408	26.36	26.601	0	168	103	1.5192716	0.06028819	1.5192716	308.3639	0	12.236603						402	11	3	NaN	NaN	NaN	0.062072	1	9499	9499		41.785	5.7482	1	80039			4265	4901	2529	2568	3345	3345					0.0016262424957176336
ETLTDSFVL	9	Unmodified						0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1024.51972	1023.51244	1.7356	0.0017782	-0.017199	-1.762E-05	1.7184	0.0017605	1024.5195301055594	26.408	0.14478	26.397	26.373	26.517	-0.011137	165	97	1.5210435	0.056729794	1.5195241	308.72354		11.514374	-0.0057055	0.00055203	0.00012626	NaN	41.785	392	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72905			4266	4901	2529	2568							0.0016262424957176336
ETNEIANANSR	11	Unmodified	_ETNEIANANSR_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.7890978108	2	609.789098	1217.56364	0.90469	0.00055167	0.49924	0.00030443	1.4039	0.00085611	609.7894051332877	12.46	0.095993	12.46	12.412	12.508	0	1218	37	0.8873258	0.0220716	0.8873258	359.43045	0	8.940582						54	5	2	NaN	NaN	NaN	0.64814	1	16926	16926		10.861	4.7711	1	3750.2			4267	1671	2530	2569	3346	3346					-0.03643658723694898
ETNEIANANSR	11	Unmodified						0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.789098	1217.56364	1.2076	0.00073636	-1.7912	-0.0010923	-0.58367	-0.00035592	609.7878700383886	12.414	0.14403	12.405	12.357	12.501	-0.0088415	1215	37	0.8891654	0.022073984	0.88764596	360.17563		8.941559	-0.027518	-0.00082018	0.00016008	NaN	10.861	64	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4126.7			4268	1671	2530	2569							-0.03643658723694898
ETNYGIPQR	9	Unmodified	_ETNYGIPQR_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2698126354001	2	539.269813	1076.52507	1.7543	0.00094606	0.5343	0.00028813	2.2886	0.0012342	539.270069518458	15.606	0.12012	15.606	15.582	15.702	0	1278	58	0.85049206	0.035031855	0.85049206	345.01556	0	14.211212						178	6	3	NaN	NaN	NaN	0.074859	1	11822	11822		39.459	20.295	1	22168			4269	5900	2531	2570	3347	3347					-0.010129195675290248
ETNYGIPQR	9	Unmodified	_ETNYGIPQR_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2698126354001	2	539.269813	1076.52507	1.6658	0.00089831	6.3195	0.0034079	7.9853	0.0043063	539.27448682608	15.628	0.16785	15.616	15.568	15.736	-0.012201	1278	61	0.85049206	0.036877573	0.8489726	345.01553	0	14.959991						209	8	3	NaN	NaN	NaN	0.060816	1	11511	11511		42.318	9.5396	1	27920			4270	5900	2531	2570	3348	3348					-0.010129195675290248
ETPGAPVRR	9	Unmodified	_ETPGAPVRR_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.77506518880006	2	491.775065	981.535577	1.0806	0.0005314	-6.5877	-0.0032396	-5.5071	-0.0027082	491.7717452662691	11.526	0.12001	11.518	11.47	11.59	-0.0075302	1332	28	0.8172735	0.016626418	0.81575406	331.945	0	6.7529907						80	6	2	NaN	NaN	NaN	0.44082	1	7768	7768		12.049	1.4437	1	7030.4			4271	459	2532	2571	3349	3349					0.044071078775687056
ETPQVAVIVR	10	Unmodified	_ETPQVAVIVR_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000493299.1_1_3:184038318-184039070:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3271305490501	2	556.327131	1110.63971	1.5239	0.00084779	-1.4632	-0.00081403	0.060694	3.3766E-05	556.3264000944249	19.997	0.09614	19.997	19.972	20.069	0	1245	67	0.87076044	0.040499628	0.87076044	353.10065	0	16.422913						178	5	3	NaN	NaN	NaN	0.38071	1	13320	13320		24.4	18.934	1	32939			4272	1977	2533	2572	3350	3350					0.08881389914427018
ETPQVAVIVR	10	Unmodified	_ETPQVAVIVR_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000493299.1_1_3:184038318-184039070:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3271305490501	2	556.327131	1110.63971	1.4416	0.00080202	-0.49765	-0.00027686	0.94399	0.00052516	556.3267299126352	20.02	0.072247	20.006	19.982	20.054	-0.014141	1248	73	0.8689189	0.044190943	0.86739945	352.35388	0	17.9198						173	4	3	NaN	NaN	NaN	0.068403	1	12944	12944		50.315	35.89	1	32749			4273	1977	2533	2572	3351	3351					0.08881389914427018
ETQASHVG	8	Unmodified	_ETQASHVG_					0	0	0			REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.3846219345002	1	828.384622	827.377345	1.6754	0.0013879	-8.8655	-0.007344	-7.1901	-0.0059562	828.3769483359401	28.435	0.09655	28.426	28.378	28.474	-0.0089798	480	37	1.3339561	0.0214988	1.3324367	271.6025	0	4.3773193						62	5	2	NaN	NaN	NaN	0.82797	1	4989	4989		5.4659	0.55612	1	3900.6	+		4274	9294	2534	2573	3352	3352					-0.043248111015145696
ETQATVIYNTK	11	Unmodified	_ETQATVIYNTK_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3300671684999	2	634.330067	1266.64558	1.7623	0.0011179	-3.8915	-0.0024685	-2.1292	-0.0013506	634.327274728178	15.798	0.095987	15.798	15.774	15.87	0	1122	34	0.9460945	0.020167947	0.9460945	383.06952	0	8.165924						69	5	2	NaN	NaN	NaN	0.59348	1	18154	18154		14.45	7.4652	1	5753.3			4275	1267	2535	2574	3353	3353					0.022924436354060163
ETQGQQPPQR	10	Unmodified	_ETQGQQPPQR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1;ENST00000442962.2_1_9:112295731-112296019:-|nuORF;ENST00000444752.1_1_9:35971343-35971724:-|nuORF	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7889008455501	2	584.788901	1167.56325	1.5027	0.00087874	-1.4006	-0.00081906	0.10204	5.9674E-05	584.7879912094577	10.926	0.23955	10.919	10.823	11.063	-0.0071888	1257	43	0.86339295	0.025794804	0.8618735	349.90375	0	10.453735						206	11	3	NaN	NaN	NaN	0.068403	1	14861	14861		50.315	21.82	1	19401			4276	697	2536	2575	3354	3354					-0.013830336528599219
ETQLPVSFR	9	Unmodified	_ETQLPVSFR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.790380902	2	538.790381	1075.56621	1.6426	0.00088504	0.71297	0.00038414	2.3556	0.0012692	538.7913006113116	21.368	0.14437	21.368	21.296	21.44	0	1263	76	0.85970795	0.046034753	0.85970795	348.7581	0	18.674927						172	7	3	NaN	NaN	NaN	0.050761	1	11802	11802		46.588	22.026	1	32587			4277	3460	2537	2576	3355	3355					0.03144841471953441
ETQLPVSFR	9	Unmodified						0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.790381	1075.56621	1.2128	0.00065345	-2.3395	-0.0012605	-1.1267	-0.00060705	538.7885512687999	21.368	0.048065	21.354	21.33	21.378	-0.014006	1263	49	0.85970795	0.02948612	0.8581885	348.7581		11.961639	-0.0069637	-0.001825	-0.00075972	NaN	46.588	107	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29034			4278	3460	2537	2576							0.03144841471953441
ETRAEFAER	9	Unmodified	_ETRAEFAER_					0	0	0		CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;nc|ENSG00000198467|P07951-2|TPM2;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENSG00000140416|ENST00000403994|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000167460|P67936-2|TPM4;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-6|TPM3;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;nc|ENSG00000198467|P07951-3|TPM2	CON__Q3SX28	CON__Q3SX28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.1842384656	3	370.184238	1107.53089	1.4226	0.00052661	-1.0694	-0.00039587	0.35316	0.00013073	370.1830808153384	12.292	0.12002	12.292	12.22	12.34	0	1506	31	0.70979416	0.018589258	0.70979416	431.75125	0	11.307434						69	6	2	NaN	NaN	NaN	0.19268	1	13166	13166		23.177	12.933	1	4495.9		+	4279	217	2538	2577	3356	3356					-0.01857821055864406
ETRFDENIYTF	11	Unmodified	_ETRFDENIYTF_					0	0	0			REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.83043130925	2	717.830431	1433.64631	1.1611	0.0008335	-9.0233	-0.0064772	-7.8621	-0.0056437	718.3252539994872	27.591	0.14478	27.591	27.543	27.688	0	1056	49	0.9863805	0.02927047	0.9863805	398.879	0	11.836609						162	7	3	NaN	NaN	NaN	0.21983	1	20291	20291		28.495	7.982	1	16989	+		4280	9021	2539	2578	3357	3357					-0.05316761715539542
ETRFDENIYTF	11	Unmodified	_ETRFDENIYTF_					0	0	0			REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.83043130925	2	717.830431	1433.64631	1.0311	0.00074014	-8.9054	-0.0063926	-7.8743	-0.0056524	717.8233835865117	27.47	0.12068	27.46	27.364	27.484	-0.0095501	1062	46	0.9827221	0.027445495	0.98120266	397.3996	0	11.098602						133	6	4	NaN	NaN	NaN	0.17797	1	19330	19330		32.377	5.0806	1	10554	+		4281	9021	2539	2578	3358	3358					-0.05316761715539542
ETRFDENIYTF	11	Unmodified						0	0	0			REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	717.830431	1433.64631	1.1611	0.0008335	-9.0233	-0.0064772	-7.8621	-0.0056437	718.3252539994872	27.591	0.14478	27.591	27.543	27.688	0	1056	49	0.9863805	0.02927047	0.9863805	398.879		11.836609	0.065522	-5.8749E-05	0.0025889	NaN	32.377	162	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16989	+		4282	9021	2539	2578							-0.05316761715539542
ETRFDENIYTF	11	Unmodified						0	0	0			REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	717.830431	1433.64631	1.0311	0.00074014	-8.9054	-0.0063926	-7.8743	-0.0056524	717.8233835865117	27.47	0.12068	27.46	27.364	27.484	-0.0095501	1062	46	0.9827221	0.027445495	0.98120266	397.3996		11.098602	-0.065522	0.00011043	-0.0025889	NaN	32.377	133	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10554	+		4283	9021	2539	2578							-0.05316761715539542
ETRRLLEDAF	10	Unmodified	_ETRRLLEDAF_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.2226931685334	3	417.222693	1248.64625	1.5222	0.00063508	2.6808	0.0011185	4.2029	0.0017536	417.2238732246702	21.464	0.14464	21.464	21.44	21.585	0	1518	37	0.7023569	0.022319257	0.7023569	426.63434	0	13.557465						107	7	2	NaN	NaN	NaN	0.68732	1	17746	17746		7.2894	4.2528	1	8101.1			4284	2898	2540	2579	3359	3359					0.031872830751581205
ETSEPGGP	8	Unmodified	_ETSEPGGP_					0	0	0			REV__GLI2|p.S690Afs*5|1|0.24|ENSG00000074047|chr2:120986383-120986383|C/-|frameshift_variant	REV__GLI2|p.S690Afs*5|1|0.24|ENSG00000074047|chr2:120986383-120986383|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3311893805002	1	773.331189	772.323913	1.5604	0.0012067	6.9476	0.0053728	8.5081	0.0065796	773.3360361756182	29.353	0.072359	29.353	29.329	29.401	0	999	49	1.0210962	0.029213786	1.0210962	208.14398	0	5.955063						72	4	2	NaN	NaN	NaN	0.8439	1	4385	4385		3.1533	0	1	4082.7	+		4285	8602	2541	2580	3360	3360					-0.07135608604028221
ETSMIASVL	9	Unmodified	_ETSMIASVL_					0	0	0		ENST00000413987.1_1_1:28836201-28836327:+|nuORF	ENST00000413987.1_1_1:28836201-28836327:+|nuORF	ENST00000413987.1_1_1:28836201-28836327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.486309814	1	950.48631	949.479033	1.8495	0.001758	-1.2891	-0.0012253	0.5604	0.00053266	950.4856882574246	21.488	0.024067	21.488	21.464	21.488	0	324	37	1.42687	0.021382451	1.42687	289.90933	0	4.344452						41	2	2	NaN	NaN	NaN	0.36492	1	7072	7072		15.175	3.6269	1	2979.1			4286	6876	2542	2581	3361	3361					0.002272992060170509
ETTAQVSK	8	Unmodified	_ETTAQVSK_					0	0	0			REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.22708215345	2	432.227082	862.439611	1.405	0.00060729	-1.8789	-0.00081212	-0.47389	-0.00020483	432.22610316686524	48.235	0.09597	48.235	48.163	48.259	0	1416	28	0.76547134	0.016676903	0.76547134	311.4975	0	6.7864075						76	5	2	NaN	NaN	NaN	0.84207	1	5559	5559		3.5732	0	1	5357.6	+		4287	8939	2543	2582	3362	3362					0.0028891524681284864
ETTAQVSK	8	Unmodified	_ETTAQVSK_					0	0	0			REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.22708215345	2	432.227082	862.439611	-0.43715	-0.00018895	0.67033	0.00028973	0.23318	0.00010079	432.22699097784636	48.209	0.11988	48.214	48.142	48.262	0.004818	1416	34	0.76547134	0.020382881	0.7639519	311.49747	0	8.294495						75	6	2	NaN	NaN	NaN	0.84207	1	5422	5422		3.5732	0	1	5956.5	+		4288	8939	2543	2582	3363	3363					0.0028891524681284864
ETTAQVSK	8	Unmodified						0	0	0			REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	432.227082	862.439611	1.405	0.00060729	-1.8789	-0.00081212	-0.47389	-0.00020483	432.22610316686524	48.235	0.09597	48.235	48.163	48.259	0	1416	28	0.76547134	0.016676903	0.76547134	311.4975		6.7864075	0.010313	-0.0012344	0.00075972	NaN	3.5732	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5357.6	+		4289	8939	2543	2582							0.0028891524681284864
ETTAQVSK	8	Unmodified						0	0	0			REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	REV__ENST00000601333.1_1_19:39306255-39306727:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.227082	862.439611	-0.43715	-0.00018895	0.67033	0.00028973	0.23318	0.00010079	432.22699097784636	48.209	0.11988	48.214	48.142	48.262	0.004818	1416	34	0.76547134	0.020382881	0.7639519	311.49747		8.294495	-0.010313	0.00096929	-0.00075972	NaN	3.5732	75	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5956.5	+		4290	8939	2543	2582							0.0028891524681284864
ETTNKTYKTVT	11	Unmodified	_ETTNKTYKTVT_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.33534951165	2	643.33535	1284.65615	2.5157	0.0016185	3.7314	0.0024005	6.2471	0.004019	643.3380960163305	18.532	0.095936	18.532	18.508	18.604	0	1128	52	0.9424274	0.031175435	0.9424274	381.52698	0	12.62088						126	5	3	NaN	NaN	NaN	0.62211	1	18515	18515		12.57	2.8237	1	11132			4291	336	2544	2583	3364	3364					0.025204262898341767
ETTVRISM	8	Unmodified	_ETTVRISM_					0	0	0		ENST00000527140.1_1_11:124642923-124669983:-|nuORF	ENST00000527140.1_1_11:124642923-124669983:-|nuORF	ENST00000527140.1_1_11:124642923-124669983:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4818931381001	1	936.481893	935.474617	1.7328	0.0016227	-10.608	-0.009934	-8.875	-0.0083113	936.4707925026004	22.67	0.096485	22.67	22.645	22.742	0	324	55	1.42687	0.032073617	1.42687	289.97144	0	6.5180664						119	5	3	NaN	NaN	NaN	0.43738	1	6736	6736		34.439	1.986	1	11229			4292	7431	2545	2584	3365	3365					0.004298347831195315
ETTVYVIVR	9	Unmodified	_ETTVYVIVR_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3084064796501	2	540.308406	1078.60226	1.4522	0.00078464	-1.9355	-0.0010458	-0.48329	-0.00026113	540.3077690467247	20.694	0.096432	20.694	20.646	20.742	0	1254	82	0.8652351	0.049717486	0.8652351	350.9878	0	20.168182						241	5	4	NaN	NaN	NaN	0.35794	1	11926	11926		15.463	2.4598	1	42369			4293	3882	2546	2585	3366	3366					0.0661029864882039
ETTVYVIVR	9	Unmodified	_ETTVYVIVR_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.3084064796501	2	540.308406	1078.60226	1.0082	0.00054472	-0.49726	-0.00026868	0.5109	0.00027604	540.3080955598961	20.694	0.1446	20.68	20.656	20.801	-0.014088	1254	88	0.8652351	0.053400338	0.86371565	350.9878	0	21.66214						212	7	2	NaN	NaN	NaN	0.02857	1	11623	11623		60.982	44.123	1	41441			4294	3882	2546	2585	3367	3367					0.0661029864882039
ETVSALASL	9	Unmodified	_ETVSALASL_					0	0	0		ENST00000490851.5_1_7:18832955-19035682:+|nuORF;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	ENST00000490851.5_1_7:18832955-19035682:+|nuORF	ENST00000490851.5_1_7:18832955-19035682:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4829389956	1	890.482939	889.475663	2.1335	0.0018999	-0.64834	-0.00057733	1.4852	0.0013226	890.4820610893321	22.067	0.16887	22.067	22.019	22.187	0	381	121	1.3929803	0.0714798	1.3929803	283.29654	0	14.53717						405	8	4	NaN	NaN	NaN	0.012648	1	5930	5930		84.879	10.547	1	93581			4295	556	2547	2586	3368	3368					0.026503724236590642
ETVTGGFGAKK	11	Unmodified	_ETVTGGFGAKK_					0	0	0		ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7956632451501	2	547.795663	1093.57677	0.95812	0.00052486	-1.5971	-0.00087486	-0.63893	-0.00035	547.7949698839598	12.748	0.096092	12.748	12.724	12.82	0	1212	28	0.8910048	0.016556382	0.8910048	361.379	0	6.715027						40	5	2	NaN	NaN	NaN	0.21983	1	12564	12564		28.495	17.325	1	2671			4296	1752	2548	2587	3369	3369					0.03372824126381602
ETVTGGFGAKK	11	Unmodified						0	0	0		ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.795663	1093.57677	2.2971	0.0012583	-5.4514	-0.0029863	-3.1544	-0.0017279	547.7917440967442	12.774	0.048019	12.765	12.741	12.789	-0.00947	1212	25	0.8910048	0.01471597	0.88948536	361.37903		5.9685974	0.0083204	-0.00276	-0.00075972	NaN	28.495	30	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2056.4			4297	1752	2548	2587							0.03372824126381602
ETWFDENIYTF	11	Unmodified	_ETWFDENIYTF_					0	0	0			REV__LZTS2|p.R96W|1|0.31|ENSG00000107816|chr10:101002824-101002824|C/T|missense_variant	REV__LZTS2|p.R96W|1|0.31|ENSG00000107816|chr10:101002824-101002824|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.81953227195	2	732.819532	1463.62451	1.2096	0.00088639	-0.13176	-9.6557E-05	1.0778	0.00078984	732.8190927521713	29.377	0.21715	29.377	29.232	29.449	0	1041	58	0.9955231	0.03473431	0.9955231	402.4973	0	14.0433655						216	10	3	NaN	NaN	NaN	0.57257	1	20446	20446		15.822	6.9028	1	26364	+		4298	13064	2549	2588	3370	3370					-0.08875566464098483
ETYGPPAS	8	Unmodified	_ETYGPPAS_					0	0	0			REV__KIF3C|p.P422T|1|0.25|ENSG00000084731|chr2:25980654-25980654|G/T|missense_variant	REV__KIF3C|p.P422T|1|0.25|ENSG00000084731|chr2:25980654-25980654|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.3675748868	1	821.367575	820.360298	1.6287	0.0013377	5.6246	0.0046199	7.2533	0.0059576	821.371923350028	26.36	0.16892	26.349	26.324	26.493	-0.011135	447	73	1.3536539	0.042961	1.3521345	275.65155	0	8.748383						238	8	3	NaN	NaN	NaN	0.76633	1	4909	4909		13.737	1.1492	1	33321	+		4299	13027	2550	2589	3371	3371					-0.05706731707334711
ETYKYLYGR	9	Unmodified	_ETYKYLYGR_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.20475100703334	3	398.204751	1191.59242	1.6655	0.00066319	0.8361	0.00033294	2.5016	0.00099613	398.54008860522805	15.822	0.04795	15.822	15.798	15.846	0	1422	28	0.7617651	0.016682267	0.7617651	462.96268	0	10.138672						33	3	2	NaN	NaN	NaN	0.58159	1	16196	16196		3.5794	2.6948	1	2076.9			4300	3641	2551	2590	3372	3372					0.004291106434266112
ETYKYLYGR	9	Unmodified	_ETYKYLYGR_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.80348827725	2	596.803488	1191.59242	2.2706	0.0013551	-1.261	-0.00075258	1.0095	0.0006025	597.3030416244945	15.868	0.095711	15.855	15.855	15.951	-0.012611	1161	28	0.9222442	0.016524255	0.92072475	373.66617	0	6.69516						60	5	2	NaN	NaN	NaN	0.33629	1	15583	15583		16.584	5.4138	1	3795.9			4301	3641	2551	2590	3373	3373					0.004291106434266112
ETYKYLYGR	9	Unmodified						0	0	0		ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	398.204751	1191.59242	2.8296	0.0011268	-2.281	-0.00090831	0.54864	0.00021847	398.20342176341404	15.868	0.047888	15.855	15.831	15.879	-0.012611	1422	28	0.7617651	0.01667869	0.7602457	462.9627		10.136475	0.016459	-0.0014069	-0.00075972	NaN	3.5794	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2748.8			4302	3641	2551	2590							0.004291106434266112
EVAADAPG	8	Unmodified	_EVAADAPG_					0	0	0		ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENST00000497406.2_1_12:59414000-59414099:+|nuORF	ENST00000497406.2_1_12:59414000-59414099:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.3413601363	1	729.34136	728.334084	0.75558	0.00055108	5.4699	0.0039894	6.2255	0.0045405	729.3456801405898	31.284	0.24132	31.284	31.235	31.477	0	609	97	1.2567334	0.057630897	1.2567334	256.44708	0	11.760086						438	11	3	NaN	NaN	NaN	0.77489	1	3738	3738		12.588	1.9829	1	89019			4303	7298	2552	2591	3374	3374					-0.040950008788172454
EVADVEPVL	9	Unmodified	_EVADVEPVL_					0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5091537461	1	970.509154	969.501877	2.1579	0.0020942	4.0324	0.0039135	6.1903	0.0060077	970.5133917055448	25.491	0.072374	25.491	25.467	25.539	0	306	109	1.4375578	0.06408596	1.4375578	291.99457	0	13.017029						150	4	2	NaN	NaN	NaN	0.032764	1	7589	7589		55.494	5.6607	1	14488			4304	3332	2553	2592	3375	3375					0.015906415951349118
EVADVEPVL	9	Unmodified	_EVADVEPVL_					0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	nc|ENSG00000141556|Q9BTW9-5|TBCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5091537461	1	970.509154	969.501877	1.9276	0.0018707	1.0991	0.0010667	3.0267	0.0029375	970.5104998072178	25.491	0.072395	25.479	25.455	25.527	-0.012011	309	79	1.435777	0.046294093	1.4342575	291.63287	0	9.403198						118	4	2	NaN	NaN	NaN	0.29681	1	7448	7448		19.118	3.9429	1	10560			4305	3332	2553	2592	3376	3376					0.015906415951349118
EVAFRGILQR	10	Unmodified	_EVAFRGILQR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.8997733515	3	396.899773	1187.67749	1.4289	0.00056715	-1.886	-0.00074857	-0.45709	-0.00018142	396.8989195376988	19.924	0.09623	19.924	19.9	19.997	0	1440	31	0.7506418	0.018544972	0.7506418	456.21967	0	11.271118						85	5	3	NaN	NaN	NaN	0.6262	1	16089	16089		13.101	1.5399	1	10467			4306	5147	2554	2593	3377	3377					0.09115900899882945
EVAFRGILQR	10	Unmodified	_EVAFRGILQR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8460217939501	2	594.846022	1187.67749	1.5116	0.00089918	-1.9349	-0.001151	-0.42333	-0.00025182	594.8448934248405	19.924	0.12029	19.924	19.9	20.021	0	1122	43	0.9460945	0.025666952	0.9460945	383.3441	0	10.399872						180	6	4	NaN	NaN	NaN	0.00014963	1	16090	16090		117.07	27.81	1	38154			4307	5147	2554	2593	3378	3378					0.09115900899882945
EVAFRGILQR	10	Unmodified	_EVAFRGILQR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8460217939501	2	594.846022	1187.67749	1.101	0.00065495	-1.0175	-0.00060523	0.083585	4.972E-05	594.8453217334645	20.02	0.1444	20.006	19.958	20.102	-0.014141	1122	46	0.9460945	0.027501822	0.9445751	383.3441	0	11.143341						210	7	4	NaN	NaN	NaN	0.23933	1	15480	15480		32.778	5.7316	1	36341			4308	5147	2554	2593	3379	3379					0.09115900899882945
EVAFRGILQR	10	Unmodified	_EVAFRGILQR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	396.8997733515	3	396.899773	1187.67749	1.4626	0.0005805	-0.89799	-0.00035641	0.56459	0.00022409	397.2337435836251	19.996	0.16844	19.982	19.958	20.126	-0.014141	1443	34	0.7487872	0.02040279	0.7472678	455.0925	0	12.400238						92	8	2	NaN	NaN	NaN	0.57785	1	15481	15481		16.226	6.6554	1	11285			4309	5147	2554	2593	3380	3380					0.09115900899882945
EVALATAVI	9	Unmodified	_EVALATAVI_					0	0	0			REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.5244098798001	1	886.52441	885.517133	1.8914	0.0016768	-1.7678	-0.0015672	0.1236	0.00010957	886.5226712099295	27.639	0.21716	27.639	27.615	27.833	0	327	148	1.425088	0.08745563	1.425088	289.84616	0	17.787476						428	10	4	NaN	NaN	NaN	0.36492	1	5884	5884		15.175	1.1338	1	59904	+		4310	8313	2555	2594	3381	3381					0.06979553183009557
EVALATAVI	9	Unmodified						0	0	0			REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	886.52441	885.517133	1.8914	0.0016768	-1.7678	-0.0015672	0.1236	0.00010957	886.5226712099295	27.639	0.21716	27.639	27.615	27.833	0	327	148	1.425088	0.08745563	1.425088	289.84616		17.787476	0.0051778	-0.00052027	0.00075972	NaN	15.175	428	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59904	+		4311	8313	2555	2594							0.06979553183009557
EVAPPAVLE	9	Unmodified	_EVAPPAVLE_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5036744377	1	924.503674	923.496398	1.1015	0.0010183	0.60611	0.00056035	1.7076	0.0015787	924.5052639204987	26.987	0.072428	26.977	26.953	27.025	-0.010126	297	49	1.4428991	0.028485656	1.4413797	293.28403	0	5.7900085						70	4	2	NaN	NaN	NaN	0.12328	1	6351	6351		32.453	0	1	6237.2			4312	1145	2556	2595	3382	3382					0.03158962803331633
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.27235532435	2	549.272355	1096.53016	1.6903	0.00092843	-0.79508	-0.00043672	0.89522	0.00049172	549.2721178513824	13.421	0.19213	13.421	13.373	13.565	0	1254	70	0.8652351	0.04238403	0.8652351	350.9154	0	17.189789						319	9	4	NaN	NaN	NaN	0.19268	1	12690	12690		25.801	10.338	1	32155			4313	5436	2557	2596	3383	3383					-0.014246157049228714
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.5173290384333	3	366.517329	1096.53016	1.6535	0.00060604	-2.4152	-0.0008852	-0.76167	-0.00027917	366.5161340399634	13.421	0.095975	13.411	13.387	13.483	-0.010098	1491	37	0.7190863	0.022297442	0.71756685	437.45728	0	13.564697						77	5	2	NaN	NaN	NaN	0.27608	1	12355	12355		13.949	1.3791	1	7868.8			4314	5436	2557	2596	3384	3384					-0.014246157049228714
EVAPPEYHR	9	Unmodified	_EVAPPEYHR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.27235532435	2	549.272355	1096.53016	1.2109	0.00066513	-0.06673	-3.6653E-05	1.1442	0.00062848	549.2724174760871	13.421	0.168	13.411	13.387	13.555	-0.010098	1254	67	0.8652351	0.040543437	0.86371565	350.9154	0	16.443298						258	8	3	NaN	NaN	NaN	0.021751	1	12358	12358		69.782	27.998	1	27987			4315	5436	2557	2596	3385	3385					-0.014246157049228714
EVAPPEYHR	9	Unmodified						0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	366.517329	1096.53016	1.8791	0.00068874	-2.9557	-0.0010833	-1.0765	-0.00039457	366.5161010995602	13.445	0.096023	13.445	13.397	13.493	0	1494	34	0.7172283	0.020438194	0.7172283	436.32697		12.433624	0.016674	-0.00035332	-0.00016929	NaN	13.949	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6338.3			4316	5436	2557	2596							-0.014246157049228714
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3198368331999	2	613.319837	1224.62512	1.1762	0.00072137	-1.4508	-0.0008898	-0.27462	-0.00016843	613.3191146858426	11.908	0.16806	11.908	11.86	12.028	0	1176	70	0.9130621	0.042269647	0.9130621	369.8316	0	17.121124						244	8	3	NaN	NaN	NaN	0.038721	1	17093	17093		55.958	23.18	1	25360			4317	5436	2558	2597	3386	3386					0.02179317766240274
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.21565004433324	3	409.21565	1224.62512	1.598	0.00065395	-0.90407	-0.00036996	0.69397	0.00028398	409.2153177603198	11.908	0.21608	11.908	11.836	12.052	0	1452	58	0.74322224	0.03525263	0.74322224	451.55396	0	21.418152						318	10	4	NaN	NaN	NaN	0.085203	1	17096	17096		33.567	22.602	1	57698			4318	5436	2558	2597	3387	3387					0.02179317766240274
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.21565004433324	3	409.21565	1224.62512	1.1117	0.00045491	-1.5031	-0.0006151	-0.39146	-0.00016019	409.2147517555282	11.934	0.26391	11.926	11.854	12.118	-0.0081854	1449	46	0.74507743	0.027824998	0.743558	452.68112	0	16.905396						278	12	3	NaN	NaN	NaN	0.01359	1	16410	16410		47.424	16.626	1	55706			4319	5436	2558	2597	3388	3388					0.02179317766240274
EVAPPEYHRK	10	Unmodified	_EVAPPEYHRK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3198368331999	2	613.319837	1224.62512	0.74002	0.00045387	-0.67687	-0.00041514	0.063143	3.8727E-05	613.3186444148415	11.934	0.16794	11.926	11.854	12.022	-0.0081854	1173	67	0.91489893	0.04042965	0.9133795	370.5756	0	16.375854						221	8	2	NaN	NaN	NaN	0.6262	1	16412	16412		13.101	6.4838	1	26845			4320	5436	2558	2597	3389	3389					0.02179317766240274
EVAPQLVL	8	Unmodified	_EVAPQLVL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.5138451935001	1	868.513845	867.506569	0.95941	0.00083326	0.67482	0.00058609	1.6342	0.0014194	868.5144771918177	29.473	0.16891	29.466	29.345	29.514	-0.0070667	423	49	1.3679651	0.02861011	1.3664457	278.31638	0	5.8208313						145	8	2	NaN	NaN	NaN	0.27223	1	5494	5494		44.302	5.3845	1	13514	+		4321	8691	2559	2598	3390	3390					0.06751570528570028
EVAQFLTGR	9	Unmodified	_EVAQFLTGR_					0	0	0		ENST00000482612.1_1_22:41999261-42000085:-|nuORF;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENSG00000100418|ENST00000263256|DESI1	ENST00000482612.1_1_22:41999261-42000085:-|nuORF	ENST00000482612.1_1_22:41999261-42000085:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.77727352675	2	510.777274	1019.53999	1.7056	0.00087116	-0.11424	-5.8353E-05	1.5913	0.00081281	510.7775496516352	20.309	0.096159	20.309	20.285	20.381	0	1332	40	0.8172735	0.02401328	0.8172735	331.77396	0	9.74823						129	5	3	NaN	NaN	NaN	0.070055	1	9352	9352		40.154	12.365	1	18975			4322	1244	2560	2599	3391	3391					0.031005723004682295
EVAQFLTGR	9	Unmodified	_EVAQFLTGR_					0	0	0		ENST00000482612.1_1_22:41999261-42000085:-|nuORF;ENST00000463886.1_1_22:41998573-42000148:-|nuORF;ENSG00000100418|ENST00000263256|DESI1	ENST00000482612.1_1_22:41999261-42000085:-|nuORF	ENST00000482612.1_1_22:41999261-42000085:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.77727352675	2	510.777274	1019.53999	1.1932	0.00060947	2.0412	0.0010426	3.2345	0.0016521	510.77856386660994	20.333	0.1204	20.319	20.271	20.391	-0.014141	1335	49	0.8154261	0.029549956	0.81390667	331.024	0	11.99588						144	6	3	NaN	NaN	NaN	0.028569	1	9164	9164		60.984	26.545	1	17944			4323	1244	2560	2599	3392	3392					0.031005723004682295
EVAQLIQGGR	10	Unmodified	_EVAQLIQGGR_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.8012799393001	2	535.80128	1069.58801	2.3402	0.0012539	-2.5609	-0.0013721	-0.22067	-0.00011824	535.8000428595701	17.669	0.21578	17.669	17.645	17.861	0	1302	49	0.8357362	0.029521227	0.8357362	339.05743	0	11.976715						286	10	4	NaN	NaN	NaN	0.00020723	1	11560	11560		102.5	41.514	1	61754			4324	642	2561	2600	3393	3393					0.05599646220525756
EVAQLIQGGR	10	Unmodified	_EVAQLIQGGR_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.8012799393001	2	535.80128	1069.58801	1.5553	0.00083336	-1.3675	-0.00073269	0.18788	0.00010067	535.8007319149666	17.69	0.16779	17.676	17.652	17.82	-0.013786	1302	46	0.8357362	0.027674615	0.8342168	339.05743	0	11.22757						266	8	4	NaN	NaN	NaN	4.7991E-06	1	11268	11268		123.58	53.795	1	62729			4325	642	2561	2600	3394	3394					0.05599646220525756
EVCCGDCE	8	Unmodified	_EVCCGDCE_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.12733895854996	2	429.127339	856.240125	0.7367	0.00031614	1.6553	0.00071034	2.392	0.0010265	429.1284476777721	31.018	0.048265	31.018	31.018	31.066	0	1437	31	0.7524962	0.018542886	0.7524962	306.25214	0	7.546631						41	3	2	NaN	NaN	NaN	0.84876	1	5480	5480		0.39566	0.065779	1	4258.4	+		4326	13134	2562	2601	3395	3395					-0.1937454735926849
EVDGSEEFEQ	10	Unmodified	_EVDGSEEFEQ_					0	0	0		ENST00000473798.1_1_1:762082-762571:-|nuORF	ENST00000473798.1_1_1:762082-762571:-|nuORF	ENST00000473798.1_1_1:762082-762571:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.1595356600666	3	390.159536	1167.45678	1.8031	0.0007035	1.2648	0.00049346	3.0679	0.001197	390.1603627806665	36.541	0.12052	36.543	36.519	36.639	0.0016785	1494	37	0.7172283	0.022297442	0.71570885	435.99838	0	13.554474						71	6	2	NaN	NaN	NaN	0.77024	1	14852	14852		1.2289	0.052129	1	4875.1			4327	7170	2563	2602	3396	3396					-0.12025253728711505
EVDMPVFF	8	Unmodified	_EVDMPVFF_					0	0	0		ENST00000489116.1_1_6:28415047-28415581:+|nuORF;ENSG00000166260|ENST00000299335|COX11	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.4542814041001	1	983.454281	982.447005	1.5651	0.0015392	-2.0389	-0.0020051	-0.47376	-0.00046593	983.4522781206294	34.252	0.1448	34.252	34.179	34.324	0	279	88	1.4535767	0.051567197	1.4535767	295.19382	0	10.472321						171	7	2	NaN	NaN	NaN	0.12449	1	7959	7959		59.445	33.693	1	13549			4328	4462	2564	2603	3397	3397					-0.044920684771113883
EVDMPVFF	8	Unmodified						0	0	0		ENST00000489116.1_1_6:28415047-28415581:+|nuORF;ENSG00000166260|ENST00000299335|COX11	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.454281	982.447005	1.5688	0.0015429	-0.33734	-0.00033176	1.2315	0.0012111	983.4546637759443	34.227	0.072376	34.225	34.201	34.274	-0.0012474	270	85	1.458913	0.049781084	1.4573935	296.2775		10.109589	-0.01324	0.0010111	0.0019084	NaN	59.445	103	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8846.9			4329	4462	2564	2603							-0.044920684771113883
EVDPGSAEL	9	Unmodified	_EVDPGSAEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4258180472001	1	916.425818	915.418542	1.9281	0.001767	-0.31553	-0.00028916	1.6126	0.0014778	916.425167324826	19.948	0.26442	19.948	19.9	20.165	0	402	70	1.3804773	0.041098595	1.3804773	280.63254	0	8.354828						341	12	3	NaN	NaN	NaN	0.021105	1	6322	6322		70.6	23.464	1	48095			4330	4687	2565	2604	3398	3398					-0.04255094852703678
EVDPGSAEL	9	Unmodified	_EVDPGSAEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4258180472001	1	916.425818	915.418542	1.613	0.0014782	0.6838	0.00062665	2.2968	0.0021049	916.4263040592954	19.948	0.2407	19.934	19.885	20.126	-0.014141	396	64	1.3840506	0.037520766	1.3825312	281.35892	0	7.6275024						324	11	3	NaN	NaN	NaN	0.018156	1	6205	6205		74.332	37.745	1	46303			4331	4687	2565	2604	3399	3399					-0.04255094852703678
EVEASDLSL	9	Unmodified	_EVEASDLSL_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8;nc|ENSG00000132716|Q5TAQ9-2|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.73747966425	2	481.73748	961.460406	1.7957	0.00086507	-3.485	-0.0016789	-1.6893	-0.0008138	481.7358316076945	25.057	0.096508	25.057	25.009	25.105	0	1359	31	0.8006399	0.018492699	0.8006399	325.2829	0	7.513214						54	5	2	NaN	NaN	NaN	0.56671	1	7362	7362		6.8632	1.3974	1	4547.4			4332	2788	2566	2605	3400	3400					-0.021865391641881615
EVEDTMRLCEM	11	Unmodified	_EVEDTMRLCEM_					0	0	0			REV__ENSG00000163808|ENST00000326047|KIF15	REV__ENSG00000163808|ENST00000326047|KIF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.2856305145501	2	678.285631	1354.55671	2.0604	0.0013975	-10.467	-0.0070998	-8.407	-0.0057023	678.2791265498697	25.732	0.19303	25.732	25.66	25.853	0	1104	64	0.9570911	0.038485885	0.9570911	387.25064	0	15.571869						356	9	5	NaN	NaN	NaN	0.57257	1	19597	19597		15.822	0.35925	1	83625	+		4333	10300	2567	2606	3401	3401					-0.10638798982404296
EVEDTMRLCEM	11	Unmodified						0	0	0			REV__ENSG00000163808|ENST00000326047|KIF15	REV__ENSG00000163808|ENST00000326047|KIF15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	678.285631	1354.55671	2.0604	0.0013975	-10.467	-0.0070998	-8.407	-0.0057023	678.2791265498697	25.732	0.19303	25.732	25.66	25.853	0	1104	64	0.9570911	0.038485885	0.9570911	387.25064		15.571869	-0.1391	0.00034965	0.0025921	NaN	15.822	356	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83625	+		4334	10300	2567	2606							-0.10638798982404296
EVEDTMRLCEM	11	Unmodified						0	0	0			REV__ENSG00000163808|ENST00000326047|KIF15	REV__ENSG00000163808|ENST00000326047|KIF15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	678.285631	1354.55671	2.1256	0.0014417	-13.691	-0.0092864	-11.565	-0.0078446	678.2772863730249	26.022	0.096552	26.011	25.962	26.059	-0.011135	1110	40	0.95342636	0.023824632	0.9519069	385.76785		9.639709	0.1391	-0.0040234	-0.0025921	NaN	15.822	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7578.6	+		4335	10300	2567	2606							-0.10638798982404296
EVELDCYLL	9	Unmodified	_EVELDCYLL_					0	0	0			REV__ENSG00000100162|ENST00000215980|CENPM	REV__ENSG00000100162|ENST00000215980|CENPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7651828587001	2	548.765183	1095.51581	0.95258	0.00052274	-2.6064	-0.0014303	-1.6538	-0.00090756	548.7639884762565	32.393	0.072399	32.389	32.365	32.437	-0.0037613	1248	43	0.8689189	0.025780857	0.86739945	352.4135	0	10.456085						78	4	2	NaN	NaN	NaN	0.49672	1	12314	12314		9.746	2.2056	1	10093	+		4336	8790	2568	2607	3402	3402					-0.028124489680521947
EVELDCYLL	9	Unmodified						0	0	0			REV__ENSG00000100162|ENST00000215980|CENPM	REV__ENSG00000100162|ENST00000215980|CENPM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.765183	1095.51581	1.0249	0.00056244	-2.334	-0.0012808	-1.3091	-0.00071838	548.7637881184015	32.394	0.0965	32.394	32.37	32.466	0	1251	40	0.8670771	0.023940682	0.8670771	351.6665		9.709747	0.0024245	0.00013166	-0.00016117	NaN	9.746	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10659	+		4337	8790	2568	2607							-0.028124489680521947
EVELDCYLL	9	Unmodified						0	0	0			REV__ENSG00000100162|ENST00000215980|CENPM	REV__ENSG00000100162|ENST00000215980|CENPM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.765183	1095.51581	0.95258	0.00052274	-2.6064	-0.0014303	-1.6538	-0.00090756	548.7639884762565	32.393	0.072399	32.389	32.365	32.437	-0.0037613	1248	43	0.8689189	0.025780857	0.86739945	352.4135		10.456085	-0.0024245	-0.00016729	0.00016117	NaN	9.746	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10093	+		4338	8790	2568	2607							-0.028124489680521947
EVFDKTYQF	9	Unmodified	_EVFDKTYQF_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7822215189	2	588.782222	1175.54989	1.8724	0.0011024	-2.4139	-0.0014213	-0.54153	-0.00031885	588.7804747257453	22.284	0.16885	22.284	22.212	22.38	0	1206	121	0.894683	0.07354826	0.894683	362.5558	0	29.80423						271	8	4	NaN	NaN	NaN	0.18779	1	15656	15656		26.115	2.7805	1	66458			4339	2419	2569	2608	3403	3403					-0.03086284484834323
EVFFSEKIYKL	11	Unmodified	_EVFFSEKIYKL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.8844782524501	2	701.884478	1401.7544	0.85628	0.00060101	-2.0002	-0.0014039	-1.1439	-0.00080291	701.8838651391077	24.502	0.048275	24.502	24.478	24.526	0	1053	31	0.9882094	0.018288136	0.9882094	399.70544	0	7.3970947						67	3	3	NaN	NaN	NaN	0.36851	1	20080	20080		23.177	11.438	1	6164.4			4340	529	2570	2609	3404	3404					0.06959654605702781
EVFFSEKIYKL	11	Unmodified	_EVFFSEKIYKL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.8844782524501	2	701.884478	1401.7544	1.2548	0.00088076	-0.81009	-0.00056859	0.44476	0.00031217	701.8824008037618	24.55	0.072311	24.538	24.514	24.586	-0.012394	1053	25	0.9882094	0.0146304965	0.98669	399.70544	0	5.9176636						73	4	3	NaN	NaN	NaN	0.46872	1	19134	19134		19.592	11.314	1	5357.7			4341	529	2570	2609	3405	3405					0.06959654605702781
EVFGTGAM	8	Unmodified	_EVFGTGAM_					0	0	0		ENSG00000196329|ENST00000358647|GIMAP5;nc|ENSG00000196329|Q96F15-2|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.3654663968001	1	811.365466	810.35819	2.0139	0.001634	-4.5907	-0.0037247	-2.5768	-0.0020907	811.3616243731985	28.436	0.1207	28.436	28.412	28.532	0	558	49	1.2873057	0.028747797	1.2873057	262.19406	0	5.855255						108	6	2	NaN	NaN	NaN	0.80071	1	4895	4895		9.1232	0.83292	1	9960.2			4342	5614	2571	2610	3406	3406					-0.05457483716782008
EVFLLLIYN	9	Unmodified	_EVFLLLIYN_					0	0	0		ENST00000483536.6_1_14:26917018-26917168:-|nuORF	ENST00000483536.6_1_14:26917018-26917168:-|nuORF	ENST00000483536.6_1_14:26917018-26917168:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.3235252276	2	562.323525	1122.6325	1.9221	0.0010808	-7.9736	-0.0044837	-6.0515	-0.0034029	562.3191191030141	25.202	0.21713	25.202	25.153	25.371	0	1212	61	0.8910048	0.03679794	0.8910048	361.26263	0	14.919922						202	10	2	NaN	NaN	NaN	0.49672	1	13803	13803		9.746	1.4557	1	34467			4343	7220	2572	2611	3407	3407					0.07608657313994627
EVFNELVGKQR	11	Unmodified	_EVFNELVGKQR_					0	0	0		ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant;nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant	ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.85932613445	2	659.859326	1317.7041	2.2079	0.0014569	-2.9348	-0.0019365	-0.7269	-0.00047965	659.8580825450626	18.197	0.047983	18.197	18.173	18.221	0	1083	25	0.9699114	0.014646292	0.9699114	392.5487	0	5.9277344						37	3	2	NaN	NaN	NaN	0.36851	1	19076	19076		23.177	13.565	1	2667.4			4344	3706	2573	2612	3408	3408					0.05795545000569291
EVFNELVGKQR	11	Unmodified	_EVFNELVGKQR_					0	0	0		ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant;nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant	ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.85932613445	2	659.859326	1317.7041	3.1258	0.0020626	-2.6815	-0.0017694	0.44426	0.00029315	659.8552409602383	18.266	0.047962	18.252	18.204	18.252	-0.01395	1080	28	0.9717421	0.016474426	0.97022265	393.28964	0	6.667633						34	3	2	NaN	NaN	NaN	0.75907	1	18228	18228		3.5794	1.2413	1	2568.3			4345	3706	2573	2612	3409	3409					0.05795545000569291
EVFRTKIVEK	10	Unmodified	_EVFRTKIVEK_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.91520051503335	3	416.915201	1247.72377	1.7117	0.00071361	-1.0831	-0.00045156	0.62857	0.00026206	416.915008827157	14.189	0.048019	14.189	14.165	14.213	0	1479	34	0.72651637	0.020429373	0.72651637	441.31317	0	12.409546						69	3	3	NaN	NaN	NaN	0.61382	1	17728	17728		14.959	8.1518	1	7792.7			4346	5448	2574	2613	3410	3410					0.10981921011330087
EVFRTKIVEK	10	Unmodified						0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	416.915201	1247.72377	1.6246	0.00067732	0.69165	0.00028836	2.3162	0.00096568	416.91527287632533	14.452	0.095798	14.441	14.369	14.465	-0.011218	1485	28	0.72280174	0.01671493	0.7212823	439.05676		10.15329	0.12591	0.0012729	-0.002617	NaN	14.959	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3654.7			4347	5448	2574	2613							0.10981921011330087
EVFSHILKR	9	Unmodified	_EVFSHILKR_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.8889857645334	3	376.888986	1127.64513	1.6771	0.00063207	-1.2359	-0.00046582	0.44112	0.00016625	376.8888473278337	16.398	0.14392	16.398	16.326	16.47	0	1482	34	0.72465914	0.020431578	0.72465914	440.6968	0	12.4253235						118	7	2	NaN	NaN	NaN	0.1507	1	14008	14008		28.495	15.032	1	18965			4348	5157	2575	2614	3411	3411					0.08641113496901198
EVFSPPGSDR	10	Unmodified	_EVFSPPGSDR_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7618204278001	2	545.76182	1089.50909	1.647	0.00089888	-1.9054	-0.0010399	-0.25838	-0.00014101	545.7609931588977	17.021	0.19194	17.021	16.901	17.093	0	1272	58	0.854179	0.03502804	0.854179	346.45908	0	14.20752						253	9	3	NaN	NaN	NaN	0.3495	1	12369	12369		25.694	13.646	1	25683			4349	3358	2576	2615	3412	3412					-0.03208625804427356
EVFSPPGSDR	10	Unmodified	_EVFSPPGSDR_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7618204278001	2	545.76182	1089.50909	1.6686	0.00091066	0.49736	0.00027144	2.166	0.0011821	545.7622282780361	17.042	0.1918	17.029	16.861	17.053	-0.013296	1272	70	0.854179	0.042393148	0.8526596	346.45908	0	17.194855						234	9	2	NaN	NaN	NaN	0.019815	1	12061	12061		63.765	23.611	1	27949			4350	3358	2576	2615	3413	3413					-0.03208625804427356
EVGAAAPP	8	Unmodified	_EVGAAAPP_					0	0	0		ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3671809563	1	711.367181	710.359904	1.1576	0.00082348	4.9319	0.0035084	6.0895	0.0043319	711.3708648331636	36.422	0.21713	36.422	36.374	36.591	0	621	100	1.2495319	0.05946684	1.2495319	255.09666	0	12.140366						346	10	3	NaN	NaN	NaN	0.80071	1	3427	3427		9.1232	3.0329	1	57023			4351	7345	2577	2616	3414	3414					-0.006861066365331681
EVGAAAPP	8	Unmodified						0	0	0		ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	ENST00000509151.5_1_4:56376191-56412799:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.367181	710.359904	1.2788	0.00090973	5.2631	0.003744	6.542	0.0046537	711.3712139049967	36.421	0.26508	36.422	36.374	36.639	0.0016747	621	67	1.2495319	0.039621234	1.2480124	255.09666		8.088821	-7.9655E-05	0.00011849	-0.00075972	NaN	9.1232	284	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51447			4352	7345	2577	2616							-0.006861066365331681
EVGDIVKVTR	10	Unmodified	_EVGDIVKVTR_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.3245878601001	2	558.324588	1114.63462	1.7161	0.00095816	-1.256	-0.00070127	0.46011	0.00025689	558.3231895622747	16.806	0.071924	16.806	16.806	16.877	0	1221	34	0.885486	0.020235598	0.885486	359.0562	0	8.205353						50	4	2	NaN	NaN	NaN	0.089401	1	13476	13476		47.424	11.901	1	4717.5			4353	1172	2578	2617	3415	3415					0.081890860518115
EVGDIVKVTR	10	Unmodified	_EVGDIVKVTR_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.3245878601001	2	558.324588	1114.63462	2.0809	0.0011618	-2.5978	-0.0014504	-0.51692	-0.00028861	558.3237694118503	16.85	0.023968	16.837	16.813	16.837	-0.013294	1221	34	0.885486	0.02023995	0.88396657	359.0562	0	8.207123						43	2	2	NaN	NaN	NaN	0.28676	1	13087	13087		28.296	12.07	1	4686.4			4354	1172	2578	2617	3416	3416					0.081890860518115
EVGFGKGG	8	Unmodified	_EVGFGKGG_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.3780799936001	1	750.37808	749.370804	0.80143	0.00060137	8.5225	0.0063951	9.324	0.0069965	750.382676876592	33.793	0.19302	33.793	33.745	33.938	0	528	64	1.3052634	0.037697315	1.3052634	266.21188	0	7.6884766						251	9	3	NaN	NaN	NaN	0.77489	1	4043	4043		12.588	1.0394	1	27841	+		4355	8363	2579	2618	3417	3417					-0.013907042622349763
EVGGHLGG	8	Unmodified	_EVGGHLGG_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3576789025002	1	725.357679	724.350402	1.4756	0.0010703	-4.7591	-0.0034521	-3.2836	-0.0023818	725.3547544926995	28.484	0.1931	28.484	28.436	28.629	0	597	79	1.2639319	0.046800017	1.2639319	257.94223	0	9.550919						354	9	3	NaN	NaN	NaN	0.81807	1	3673	3673		6.794	3.2208	1	40487			4356	5373	2580	2619	3418	3418					-0.022798749220328318
EVGGHLGG	8	Unmodified						0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.357679	724.350402	1.104	0.00080076	-6.3101	-0.004577	-5.2061	-0.0037763	725.3528436619749	28.483	0.19301	28.475	28.427	28.62	-0.0083504	594	106	1.265731	0.06303048	1.2642115	258.3094		12.86322	-0.0045218	-0.00067546	0.00013985	NaN	6.794	345	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42467			4357	5373	2580	2619							-0.022798749220328318
EVGGQPPA	8	Unmodified	_EVGGQPPA_					0	0	0		SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|19|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|21|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|46|3|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|16|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|7|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|8|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|40|3|sense;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|6|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|8|1|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|6|1|sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|17|2|sense;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|28|3|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|22|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|10|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|6|1|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|41|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|28|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|38|3|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|27|2|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|34|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|41|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3729946157	1	754.372995	753.365718	2.1179	0.0015977	-2.3096	-0.0017423	-0.19168	-0.0001446	754.3711473932362	26.143	0.096533	26.131	26.083	26.18	-0.011137	621	88	1.2495319	0.052253127	1.2480124	254.82104	0	10.656158						167	5	2	NaN	NaN	NaN	0.80692	1	4042	4042		8.2903	1.4271	1	17047			4358	13696;13701	2581	2620	3419	3419					-0.020830081248618626
EVGGQPPA	8	Unmodified						0	0	0		SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|19|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|21|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|46|3|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|16|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|7|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|8|1|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|40|3|sense;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|6|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|8|1|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|6|1|sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|17|2|sense;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|28|3|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|22|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|10|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|6|1|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|41|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|28|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|38|3|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|27|2|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|34|3|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|41|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	754.372995	753.365718	2.0159	0.0015207	-0.73167	-0.00055196	1.2842	0.00096876	754.3724668711689	26.119	0.072418	26.119	26.094	26.167	0	621	97	1.2495319	0.057655573	1.2495319	254.82104		11.757889	-0.0063795	0.00056187	0.00075972	NaN	8.2903	145	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15761			4359	13696;13701	2581	2620							-0.020830081248618626
EVGKIAVI	8	Unmodified	_EVGKIAVI_					0	0	0			REV__ENST00000441829.2_9:44302237-44303615:+|nuORF	REV__ENST00000441829.2_9:44302237-44303615:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.763103519	2	414.763104	827.511654	1.4822	0.00061474	-2.4567	-0.0010189	-0.9745	-0.00040419	414.7621077580412	17.498	0.14402	17.484	17.436	17.58	-0.013569	1380	40	0.7876915	0.024057508	0.78617203	320.75143	0	9.796326						145	7	3	NaN	NaN	NaN	0.63138	1	4997	4997		23.334	1.4994	1	20122	+		4360	9789	2582	2621	3420	3420					0.09099874391188223
EVGKVIQQGR	10	Unmodified	_EVGKVIQQGR_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.3223795221501	2	557.32238	1112.63021	1.2795	0.00071312	-1.9996	-0.0011144	-0.72002	-0.00040128	557.3207217667655	12.292	0.095964	12.292	12.268	12.364	0	1185	28	0.90755045	0.0165385	0.90755045	368.01123	0	6.70636						51	5	2	NaN	NaN	NaN	0.66626	1	13391	13391		10.36	4.666	1	4069.3			4361	1628	2583	2622	3421	3421					0.07839621628886562
EVGLYVLTL	9	Unmodified	_EVGLYVLTL_					0	0	0			REV__tr|U7SP75|U7SP75_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01755PE=4SV=1	REV__tr|U7SP75|U7SP75_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01755PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5819247587	1	1006.58192	1005.57465	1.237	0.0012451	-0.74142	-0.0007463	0.49557	0.00049883	1006.5814602320893	31.742	0.14483	31.742	31.694	31.839	0	174	109	1.5157272	0.06377375	1.5157272	307.71744	0	12.947113						289	7	3	NaN	NaN	NaN	0.04947	1	8818	8818		47.136	5.6757	1	67748	+		4362	13456	2584	2623	3422	3422					0.0720839538855671
EVGSIIGKK	9	Unmodified	_EVGSIIGKK_					0	0	0		ENST00000492809.5_1_3:51994845-51995337:-|nuORF;ENST00000498822.5_1_3:51994845-51996905:-|nuORF;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000090097|P57723-2|PCBP4;ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;ENSG00000090097|ENST00000461554|PCBP4	ENST00000492809.5_1_3:51994845-51995337:-|nuORF	ENST00000492809.5_1_3:51994845-51995337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.7845672426	2	465.784567	929.554582	1.4449	0.00067299	-1.2767	-0.00059467	0.16815	7.8322E-05	465.7848101121379	13.469	0.072028	13.469	13.445	13.517	0	1344	34	0.8098828	0.020327687	0.8098828	329.19724	0	8.262695						64	4	2	NaN	NaN	NaN	0.084037	1	6606	6606		38.131	7.5207	1	6430.1			4363	1052	2585	2624	3423	3423					0.08698644448611503
EVGSIIGKK	9	Unmodified						0	0	0		ENST00000492809.5_1_3:51994845-51995337:-|nuORF;ENST00000498822.5_1_3:51994845-51996905:-|nuORF;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;nc|ENSG00000090097|P57723-2|PCBP4;ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000498121.1_1_21:47289198-47321357:+|nuORF;ENSG00000090097|ENST00000461554|PCBP4	ENST00000492809.5_1_3:51994845-51995337:-|nuORF	ENST00000492809.5_1_3:51994845-51995337:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.784567	929.554582	1.1196	0.00052151	-2.2887	-0.001066	-1.1691	-0.00054454	465.7842925707036	13.517	0.072046	13.507	13.459	13.531	-0.010098	1338	31	0.81357855	0.018478692	0.8120591	330.69946		7.511139	0.019334	-0.00053823	0.0010882	NaN	38.131	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3512.5			4364	1052	2585	2624							0.08698644448611503
EVGSYFASLL	10	Unmodified	_EVGSYFASLL_					0	0	0			REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF	REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2793146892001	2	543.279315	1084.54408	1.5119	0.00082137	-3.9981	-0.0021721	-2.4862	-0.0013507	543.2769984758542	20.068	0.096273	20.054	20.006	20.102	-0.014141	1260	73	0.8615505	0.04420048	0.8600311	349.469	0	17.928955						225	5	2	NaN	NaN	NaN	0.64158	1	11848	11848		12.049	0.50025	1	38528	+		4365	12769	2586	2625	3424	3424					0.005186170035358373
EVHAVVTVR	9	Unmodified	_EVHAVVTVR_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1;ENST00000597421.1_1_19:47349063-47354074:-|nuORF	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.29309076645	2	505.293091	1008.57163	1.9348	0.00097763	-2.251	-0.0011374	-0.31623	-0.00015979	505.2924883424017	14.141	0.048076	14.141	14.117	14.165	0	1281	31	0.84864825	0.018438756	0.84864825	344.56052	0	7.486328						49	3	2	NaN	NaN	NaN	0.13999	1	8931	8931		30.035	14.86	1	4202.6			4366	534	2587	2626	3425	3425					0.06768565054414921
EVHAVVTVR	9	Unmodified						0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1;ENST00000597421.1_1_19:47349063-47354074:-|nuORF	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.293091	1008.57163	1.6409	0.00082911	-2.6221	-0.0013249	-0.98125	-0.00049582	505.29178612779384	14.189	0.071836	14.177	14.154	14.225	-0.011219	1278	31	0.85049206	0.018438756	0.8489726	345.3091		7.486328	0.018204	-0.00010297	0.00016217	NaN	30.035	46	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4411.7			4367	534	2587	2626							0.06768565054414921
EVHGPDWHL	9	Unmodified	_EVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2592479491001	2	545.259248	1088.50394	1.6416	0.00089512	-1.5249	-0.00083148	0.11672	6.364E-05	545.2581501949444	19.564	0.19206	19.564	19.54	19.732	0	1272	61	0.854179	0.03686565	0.854179	346.46307	0	14.953033						236	9	3	NaN	NaN	NaN	0.14301	1	12307	12307		29.598	10.435	1	36882			4368	2444	2588	2627	3426	3426					-0.03676884876381337
EVHGPDWHL	9	Unmodified	_EVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2592479491001	2	545.259248	1088.50394	1.4751	0.00080431	-2.2308	-0.0012163	-0.75567	-0.00041204	545.2586920218462	19.611	0.16846	19.597	19.573	19.741	-0.014141	1272	61	0.854179	0.036861658	0.8526596	346.46307	0	14.951416						248	8	5	NaN	NaN	NaN	0.021105	1	11998	11998		70.6	30.446	1	31172			4369	2444	2588	2627	3427	3427					-0.03676884876381337
EVHGPDWHL	9	Unmodified	_EVHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.8419241216	3	363.841924	1088.50394	1.8738	0.00068177	-2.5973	-0.00094501	-0.7235	-0.00026324	363.8411489474665	19.611	0.12033	19.597	19.573	19.693	-0.014141	1494	37	0.7172283	0.022297442	0.71570885	436.3668	0	13.565918						96	6	3	NaN	NaN	NaN	0.12945	1	11999	11999		27.296	15.248	1	8732.2			4370	2444	2588	2627	3428	3428					-0.03676884876381337
EVHKQNALF	9	Unmodified	_EVHKQNALF_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2905480775	2	543.290548	1084.56654	1.6534	0.00089828	4.3626	0.0023702	6.016	0.0032684	543.2919631714675	25.177	0.14472	25.165	25.141	25.286	-0.012011	1209	70	0.892844	0.042319894	0.8913246	362.16235	0	17.166138						205	7	3	NaN	NaN	NaN	0.63698	1	11863	11863		3.9685	1.1833	1	20995			4371	675	2589	2628	3429	3429					0.027642611918054172
EVHKQNALF	9	Unmodified						0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.290548	1084.56654	1.6269	0.0008839	4.0893	0.0022217	5.7162	0.0031056	543.2927459170562	25.153	0.0965	25.153	25.129	25.226	0	1206	67	0.894683	0.040473342	0.894683	362.9083		16.417145	-0.0059312	-0.00013067	0.0016792	NaN	3.9685	159	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19481			4372	675	2589	2628							0.027642611918054172
EVIDVFEIM	9	Unmodified	_EVIDVFEIM_					0	0	0		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5438246929	1	1094.54382	1093.53655	1.9073	0.0020877	-0.77006	-0.00084287	1.1373	0.0012448	1094.5435282894136	36.061	0.26532	36.061	35.964	36.229	0	99	76	1.5599792	0.04419589	1.5599792	316.35657	0	8.962738						449	12	4	NaN	NaN	NaN	0.016254	1	12550	12550		76.739	18.504	1	98031			4373	7833	2590	2629	3430	3430					-0.006478585883996857
EVIDVFEIM	9	Unmodified	_EVIDVFEIM_					0	0	0		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5438246929	1	1094.54382	1093.53655	1.6137	0.0017663	-0.45146	-0.00049414	1.1623	0.0012722	1094.5440507315836	36.059	0.24106	36.06	35.988	36.229	0.0011024	96	73	1.5617468	0.04242587	1.5602274	316.71506	0	8.60376						467	11	5	NaN	NaN	NaN	0.0072287	1	12228	12228		98.041	28.259	1	94469			4374	7833	2590	2629	3431	3431					-0.006478585883996857
EVIDVFEIM	9	Oxidation (M)	_EVIDVFEIM(Oxidation (M))_		EVIDVFEIM(1)		EVIDVFEIM(100)	0	0	1		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1110.538739315	1	1110.53874	1109.53146	1.3378	0.0014857	-0.68182	-0.00075718	0.65599	0.0007285	1110.538740265386	31.187	0.21717	31.187	31.139	31.356	0	87	97	1.5670487	0.056561828	1.5670487	317.73312	0	11.468414						563	10	5	NaN	NaN	NaN	0.0062755	1	13249	13249		99.986	38.715	1	136340			4375	7833	2590	2630	3432	3432		636			-0.01892162451031254
EVIDVFEIM	9	Oxidation (M)	_EVIDVFEIM(Oxidation (M))_		EVIDVFEIM(1)		EVIDVFEIM(140)	0	0	1		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.538739315	1	1110.53874	1109.53146	1.0585	0.0011755	-1.2263	-0.0013619	-0.16783	-0.00018638	1110.5374997144622	31.186	0.2413	31.181	31.133	31.374	-0.0050716	81	106	1.5705823	0.061861157	1.5690628	318.4496	0	12.542908						538	11	5	NaN	NaN	NaN	1.2958E-07	1	12878	12878		136.74	89.604	1	138190			4376	7833	2590	2630	3433	3433		636			-0.01892162451031254
EVIFREPD	8	Unmodified	_EVIFREPD_					0	0	0		ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.75600676839997	2	502.756007	1003.49746	1.9177	0.00096413	1.8839	0.00094716	3.8016	0.0019113	502.7581224711993	16.83	0.095896	16.83	16.83	16.925	0	1299	40	0.8375814	0.023995101	0.8375814	340.09036	0	9.74292						55	5	2	NaN	NaN	NaN	0.7718	1	8724	8724		13.003	1.4544	1	3760			4377	3223	2591	2631	3434	3434					-0.004148228277699673
EVIGGLGA	8	Unmodified	_EVIGGLGA_					0	0	0		nc|ENSG00000197912|Q9UQ90-2|SPG7;ENSG00000197912|ENST00000645818|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3984810847	1	715.398481	714.391205	1.4488	0.0010365	-0.27981	-0.00020018	1.169	0.00083632	715.3982554474892	26.456	0.1448	26.456	26.432	26.577	0	585	52	1.2711272	0.03058207	1.2711272	259.47778	0	6.2427826						138	7	2	NaN	NaN	NaN	0.76633	1	3509	3509		13.737	0	1	14824			4378	5741	2592	2632	3435	3435					0.02258466397574921
EVIGGLGA	8	Unmodified						0	0	0		nc|ENSG00000197912|Q9UQ90-2|SPG7;ENSG00000197912|ENST00000645818|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.398481	714.391205	1.2307	0.00088044	1.3126	0.00093902	2.5433	0.0018195	715.399376715029	26.48	0.14479	26.47	26.421	26.566	-0.010645	585	58	1.2711272	0.034179926	1.2696078	259.47775		6.9772186	0.0065958	0.00060298	-0.00075972	NaN	13.737	127	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12631			4379	5741	2592	2632							0.02258466397574921
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.8451561267	2	605.845156	1209.67576	1.7072	0.0010343	-2.6665	-0.0016155	-0.95929	-0.00058118	605.8432547170174	25.105	0.24129	25.105	25.033	25.274	0	1137	58	0.9369253	0.034861922	0.9369253	379.54956	0	14.122589						383	11	6	NaN	NaN	NaN	0.00020722	1	16726	16726		121.31	33.532	1	200430			4380	4958	2593	2633	3436	3436					0.0793084709125651
EVILIDPFHK	10	Unmodified	_EVILIDPFHK_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.8451561267	2	605.845156	1209.67576	1.4776	0.00089518	-1.5208	-0.0009214	-0.043268	-2.6214E-05	605.8443121293918	25.129	0.28948	25.117	25.045	25.334	-0.012011	1137	58	0.9369253	0.034858167	0.93540585	379.54953	0	14.121094						356	13	5	NaN	NaN	NaN	0.0012657	1	16052	16052		114.98	27.206	1	188980			4381	4958	2593	2633	3437	3437					0.0793084709125651
EVISPDTTER	10	Unmodified	_EVISPDTTER_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.78549248935	2	573.785492	1145.55643	1.4486	0.00083119	-3.702	-0.0021242	-2.2534	-0.001293	573.7830737965088	14.909	0.14418	14.909	14.837	14.981	0	1251	76	0.8670771	0.046049654	0.8670771	351.47565	0	18.666534						232	7	3	NaN	NaN	NaN	0.0093647	1	14640	14640		72.076	2.713	1	23572			4382	3358	2594	2634	3438	3438					-0.010523913241058835
EVISPDTTER	10	Unmodified	_EVISPDTTER_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.78549248935	2	573.785492	1145.55643	0.84611	0.00048548	-3.139	-0.0018011	-2.2929	-0.0013156	573.7842551926392	14.884	0.14414	14.872	14.848	14.992	-0.011737	1251	70	0.8670771	0.04235655	0.8655577	351.47565	0	17.169495						254	7	3	NaN	NaN	NaN	0.2504	1	14159	14159		31.198	13.228	1	25974			4383	3358	2594	2634	3439	3439					-0.010523913241058835
EVISTPGVVAR	11	Unmodified	_EVISTPGVVAR_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3245878601	2	564.324588	1126.63462	2.501	0.0014114	-2.3114	-0.0013044	0.18954	0.00010696	564.3237365236956	18.508	0.071903	18.508	18.484	18.556	0	1224	64	0.883646	0.038656652	0.883646	358.2635	0	15.672852						132	4	3	NaN	NaN	NaN	0.40559	1	13976	13976		21.85	1.3371	1	15676			4384	1938	2595	2635	3440	3440					0.0763708605179545
EVISTPGVVAR	11	Unmodified	_EVISTPGVVAR_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3245878601	2	564.324588	1126.63462	1.8591	0.0010491	-0.43159	-0.00024356	1.4275	0.00080559	564.3239852161076	18.53	0.071918	18.516	18.492	18.564	-0.01395	1227	61	0.88180584	0.03681785	0.8802864	357.5174	0	14.927338						130	4	3	NaN	NaN	NaN	0.19064	1	13529	13529		31.198	13.399	1	14944			4385	1938	2595	2635	3441	3441					0.0763708605179545
EVLAGSRG	8	Unmodified	_EVLAGSRG_					0	0	0		ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4260928187001	1	788.426093	787.418816	2.163	0.0017053	-4.9121	-0.0038728	-2.7491	-0.0021675	788.4222752539954	23.369	0.072275	23.369	23.345	23.417	0	522	55	1.3088527	0.032299876	1.3088527	266.7121	0	6.581909						74	4	2	NaN	NaN	NaN	0.81251	1	4593	4593		7.5404	0	1	5106			4386	6543	2596	2636	3442	3442					0.016603696578158633
EVLAGSRG	8	Unmodified	_EVLAGSRG_					0	0	0		ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4260928187001	1	788.426093	787.418816	2.045	0.0016124	-3.2004	-0.0025233	-1.1554	-0.00091091	788.4242469951863	23.513	0.096504	23.513	23.441	23.538	0	540	58	1.2980826	0.03410697	1.2980826	264.5174	0	6.9501953						96	5	2	NaN	NaN	NaN	0.75561	1	4594	4594		15.175	0	1	7824			4387	6543	2596	2636	3443	3443					0.016603696578158633
EVLAGSRG	8	Unmodified	_EVLAGSRG_					0	0	0		ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	ENST00000342160.7_2_X:53707007-53711004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4260928187001	1	788.426093	787.418816	2.3025	0.0018153	-6.0551	-0.004774	-3.7527	-0.0029587	788.4213503302452	23.513	0.072369	23.5	23.476	23.548	-0.013294	537	49	1.2998781	0.02872324	1.2983587	264.8833	0	5.853119						83	4	2	NaN	NaN	NaN	0.78264	1	4500	4500		11.548	0	1	6611.4			4388	6543	2596	2636	3444	3444					0.016603696578158633
EVLSFAVMLD	10	Unmodified	_EVLSFAVMLD_					0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1123.5703737944	1	1123.57037	1122.5631	1.4949	0.0016796	-8.6439	-0.009712	-7.1491	-0.0080325	1123.5609494220803	33.069	0.072392	33.069	33.045	33.118	0	63	52	1.5811787	0.030011892	1.5811787	320.55237	0	6.08432						90	4	2	NaN	NaN	NaN	0.68669	1	13790	13790		8.962	4.0522	1	9098.4	+		4389	13097	2597	2637	3445	3445					0.006718303029174422
EVMKIYYF	8	Unmodified	_EVMKIYYF_					0	0	0		nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7753536145	2	546.775354	1091.53615	1.6597	0.0009075	-10.061	-0.0055009	-8.4009	-0.0045934	546.7694462533166	30.004	0.16899	30.004	30.004	30.173	0	1260	61	0.8615505	0.036857605	0.8615505	349.44092	0	14.94931						163	8	2	NaN	NaN	NaN	0.79379	1	12464	12464		10.052	1.0896	1	16360			4390	7922	2598	2638	3446	3446					-0.005952335176289125
EVNDPSLTIK	10	Unmodified	_EVNDPSLTIK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.3007784128	2	558.300778	1114.587	2.0725	0.0011571	-3.1295	-0.0017472	-1.057	-0.00059015	558.2990593301648	18.029	0.16789	18.029	18.005	18.173	0	1221	82	0.885486	0.049701393	0.885486	359.0564	0	20.153473						288	8	4	NaN	NaN	NaN	0.16811	1	13468	13468		38.269	14.935	1	55644			4391	5794	2599	2639	3447	3447					0.034293870609417354
EVNDPSLTIK	10	Unmodified	_EVNDPSLTIK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.3007784128	2	558.300778	1114.587	2.0112	0.0011228	-3.2848	-0.0018339	-1.2736	-0.00071105	558.2982249328079	18.05	0.19204	18.036	18.012	18.204	-0.013786	1224	76	0.883646	0.045999944	0.88212657	358.3103	0	18.652527						325	9	4	NaN	NaN	NaN	0.20007	1	13082	13082		35.523	10.562	1	58743			4392	5794	2599	2639	3448	3448					0.034293870609417354
EVNEAELLRR	10	Unmodified	_EVNEAELLRR_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.22632618096657	3	410.226326	1227.65715	1.6152	0.00066259	-0.92751	-0.00038049	0.68766	0.0002821	410.2263544772731	16.758	0.071955	16.758	16.758	16.83	0	1455	31	0.7413668	0.018555045	0.7413668	450.4143	0	11.27301						71	4	3	NaN	NaN	NaN	0.66854	1	17192	17192		10.204	1.2622	1	4936.2			4393	5079	2600	2640	3449	3449					0.05242685449388773
EVNEAELLRR	10	Unmodified						0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	410.226326	1227.65715	1.7625	0.00072303	0.52708	0.00021622	2.2896	0.00093925	410.22733361847014	16.802	0.095833	16.789	16.765	16.861	-0.013294	1452	31	0.74322224	0.018557012	0.7417028	451.54156		11.274261	0.015686	0.00080461	0.00016798	NaN	10.204	76	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6018.9			4394	5079	2600	2640							0.05242685449388773
EVNSGYRIN	9	Unmodified	_EVNSGYRIN_					0	0	0		nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2619876033001	2	526.261988	1050.50942	1.1156	0.00058711	-2.1635	-0.0011386	-1.0479	-0.00055146	526.2611874326485	24.429	0.12067	24.417	24.344	24.465	-0.012749	1287	85	0.8449601	0.051617444	0.84344065	342.8787	0	20.946014						228	6	3	NaN	NaN	NaN	0.2961	1	10426	10426		19.164	2.5794	1	29483			4395	5527	2601	2641	3450	3450					-0.01381206084556652
EVPEGKGGG	9	Unmodified	_EVPEGKGGG_					0	0	0		ENST00000282096.8_1_11:14665339-14665387:+|nuORF	ENST00000282096.8_1_11:14665339-14665387:+|nuORF	ENST00000282096.8_1_11:14665339-14665387:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.4050230256003	1	829.405023	828.397747	1.0801	0.00089588	4.8568	0.0040282	5.9369	0.0049241	829.4092911059605	28.749	0.14477	28.74	28.692	28.837	-0.0083504	456	55	1.348284	0.032224298	1.3467646	274.5142	0	6.5609436						171	7	3	NaN	NaN	NaN	0.25448	1	5002	5002		21.835	2.5503	1	17642			4396	6363	2602	2642	3451	3451					-0.023316404416959813
EVPELYHQR	9	Unmodified	_EVPELYHQR_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.7987372503501	2	585.798737	1169.58292	1.9226	0.0011262	-1.1983	-0.00070194	0.72432	0.0004243	585.7976893974344	15.342	0.072097	15.342	15.318	15.39	0	1182	28	0.9093879	0.016534925	0.9093879	368.5365	0	6.700897						51	4	2	NaN	NaN	NaN	0.25424	1	15470	15470		30.61	16.185	1	4281.6			4397	5845	2603	2643	3452	3452					0.0049134235789551894
EVPELYHQR	9	Unmodified	_EVPELYHQR_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.86825032243337	3	390.86825	1169.58292	3.2026	0.0012518	-7.0497	-0.0027555	-3.847	-0.0015037	391.1997144756294	15.364	0.071858	15.352	15.328	15.4	-0.012201	1434	22	0.75435036	0.012979388	0.7528309	458.555	0	7.8898926						32	4	2	NaN	NaN	NaN	0.3947	1	14932	14932		13.949	1.3791	1	1450.7			4398	5845	2603	2643	3453	3453					0.0049134235789551894
EVPELYHQR	9	Unmodified	_EVPELYHQR_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.7987372503501	2	585.798737	1169.58292	1.9395	0.0011361	-2.073	-0.0012144	-0.13354	-7.8228E-05	585.7969640199642	15.364	0.095971	15.352	15.352	15.448	-0.012201	1182	31	0.9093879	0.018371165	0.90786844	368.5365	0	7.4450684						58	5	2	NaN	NaN	NaN	0.37272	1	14933	14933		21.835	10.665	1	4963.5			4399	5845	2603	2643	3454	3454					0.0049134235789551894
EVPGVVTPL	9	Unmodified	_EVPGVVTPL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.5244098798001	1	910.52441	909.517133	1.8631	0.0016964	-1.2578	-0.0011452	0.60535	0.00055119	910.5236249668046	27.808	0.1689	27.808	27.736	27.905	0	312	94	1.433996	0.055258393	1.433996	291.54016	0	11.234375						211	8	2	NaN	NaN	NaN	0.074859	1	6222	6222		39.459	0	1	19736			4400	5214	2604	2644	3455	3455					0.05875553183000193
EVPKPAVPQP	10	Unmodified	_EVPKPAVPQP_					0	0	0		ENST00000595406.1_1_19:22321288-22321780:+|nuORF;ENSG00000156374|ENST00000369847|PCGF6	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	ENST00000595406.1_1_19:22321288-22321780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	354.53784157986667	3	354.537842	1060.5917	2.2351	0.00079242	-3.7029	-0.0013128	-1.4678	-0.00052039	354.87055793997905	11.548	0.072076	11.548	11.476	11.548	0	1512	34	0.7060759	0.020453751	0.7060759	429.72266	0	12.448303						51	4	2	NaN	NaN	NaN	0.65442	1	11141	11141		8.9416	3.2444	1	4181.7			4401	3915	2605	2645	3456	3456					0.06382315994369492
EVPNGGSP	8	Unmodified	_EVPNGGSP_					0	0	0			REV__ENST00000510624.5_1_4:109087617-109087701:-|nuORF	REV__ENST00000510624.5_1_4:109087617-109087701:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3522591736001	1	756.352259	755.344983	1.1758	0.00088932	4.35	0.0032901	5.5258	0.0041794	756.3554140132985	30.632	0.14481	30.632	30.584	30.728	0	576	55	1.2765218	0.032358527	1.2765218	260.31296	0	6.5986633						160	7	3	NaN	NaN	NaN	0.80692	1	4160	4160		8.2903	0.74991	1	13261	+		4402	12555	2606	2646	3457	3457					-0.042475985045143716
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.5487406171667	3	361.548741	1081.62439	2.0826	0.00075297	-1.9706	-0.00071248	0.11201	4.0496E-05	361.54823076128304	13.925	0.071989	13.925	13.901	13.973	0	1503	31	0.711653	0.018585265	0.711653	433.00912	0	11.308289						64	4	2	NaN	NaN	NaN	0.11656	1	12065	12065		33.425	23.065	1	5641.8			4403	4242	2607	2647	3458	3458					0.08684523117221943
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.8194726924501	2	541.819473	1081.62439	2.0402	0.0011054	-1.4133	-0.00076578	0.62685	0.00033964	541.8188103358864	13.925	0.12	13.925	13.877	13.997	0	1242	55	0.87260187	0.033139646	0.87260187	353.96368	0	13.44281						158	6	3	NaN	NaN	NaN	0.13999	1	12066	12066		34.439	17.855	1	27221			4404	4242	2607	2647	3459	3459					0.08684523117221943
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.8194726924501	2	541.819473	1081.62439	1.3675	0.00074094	-1.1057	-0.00059908	0.26183	0.00014186	541.8194199180017	13.949	0.11989	13.938	13.914	14.034	-0.010672	1242	43	0.87260187	0.025778055	0.8710824	353.96368	0	10.456665						163	6	3	NaN	NaN	NaN	0.13999	1	11751	11751		34.439	26.149	1	24618			4405	4242	2607	2647	3460	3460					0.08684523117221943
EVPNKIINR	9	Unmodified	_EVPNKIINR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.5487406171667	3	361.548741	1081.62439	1.9367	0.00070022	-0.074278	-2.6855E-05	1.8624	0.00067336	361.5490214619952	13.949	0.11989	13.938	13.914	14.034	-0.010672	1503	28	0.711653	0.016727626	0.71013355	433.00912	0	10.178009						74	6	2	NaN	NaN	NaN	0.12866	1	11752	11752		31.675	20.71	1	6316.5			4406	4242	2607	2647	3461	3461					0.08684523117221943
EVPRTIIVTTR	11	Unmodified	_EVPRTIIVTTR_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.925988102	3	428.925988	1283.75613	1.5477	0.00066383	-1.9168	-0.00082218	-0.36916	-0.00015834	428.9248849316136	17.522	0.095997	17.508	17.484	17.58	-0.013567	1410	49	0.76917666	0.029636562	0.7676573	467.08334	0	17.996826						93	5	2	NaN	NaN	NaN	0.60043	1	17673	17673		13.993	8.4556	1	8430.1			4407	3588	2608	2648	3462	3462					0.12560708414321198
EVPSSPSEES	10	Unmodified	_EVPSSPSEES_					0	0	0		nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-6|SON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.22747608395	2	524.227476	1046.4404	1.687	0.00088435	-0.55774	-0.00029238	1.1292	0.00059197	524.2272461917015	21.85	0.096329	21.836	21.812	21.908	-0.013895	1329	46	0.81912065	0.027698576	0.8176012	332.40994	0	11.240448						65	5	2	NaN	NaN	NaN	0.73444	1	10257	10257		5.6942	0.78442	1	4756.6			4408	4015	2609	2649	3463	3463					-0.08096334894798929
EVPSSPSEES	10	Unmodified						0	0	0		nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-6|SON	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.227476	1046.4404	1.5606	0.00081809	0.2935	0.00015386	1.8541	0.00097195	524.2268696911142	21.874	0.072332	21.874	21.85	21.922	0	1329	49	0.81912065	0.029546797	0.81912065	332.40994		11.9904785	0.019059	0.00054428	0.00075972	NaN	5.6942	91	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6703.7			4409	4015	2609	2649							-0.08096334894798929
EVQDLHLAQR	10	Unmodified	_EVQDLHLAQR_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.8227436628999	2	604.822744	1207.63093	1.8126	0.0010963	-4.0563	-0.0024533	-2.2436	-0.001357	605.3207168697218	15.316	0.047991	15.304	15.28	15.328	-0.012202	1134	31	0.9387595	0.018341422	0.93724006	380.29987	0	7.4302673						52	3	3	NaN	NaN	NaN	0.47025	1	16005	16005		20.688	5.8336	1	3171.5			4410	2459	2610	2650	3464	3464					0.03542416277923621
EVQPYGHENL	10	Unmodified	_EVQPYGHENL_					0	0	0			REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF;REV__nc|ENSG00000079263|Q13342-3|SP140	REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2803773217001	2	593.280377	1184.5462	1.6947	0.0010055	-8.151	-0.0048358	-6.4563	-0.0038304	593.2759134263863	30.029	0.19314	30.029	30.004	30.198	0	1191	52	0.90387505	0.03125292	0.90387505	366.24847	0	12.663605						233	9	3	NaN	NaN	NaN	0.19179	1	15991	15991		36.235	1.7809	1	45485	+		4411	12401;8640	2611	2651	3465	3465					-0.038689542586553216
EVQPYGHENL	10	Unmodified						0	0	0			REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF;REV__nc|ENSG00000079263|Q13342-3|SP140	REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.280377	1184.5462	1.6947	0.0010055	-8.151	-0.0048358	-6.4563	-0.0038304	593.2759134263863	30.029	0.19314	30.029	30.004	30.198	0	1191	52	0.90387505	0.03125292	0.90387505	366.24847		12.663605	0.00367	-0.00024919	0.00075972	NaN	36.235	233	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45485	+		4412	12401;8640	2611	2651							-0.038689542586553216
EVRGPPPLPSP	11	Unmodified	_EVRGPPPLPSP_					0	0	0		ENST00000566802.5_1_16:74366359-74378726:-|nuORF	ENST00000566802.5_1_16:74366359-74378726:-|nuORF	ENST00000566802.5_1_16:74366359-74378726:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.3193055169501	2	573.319306	1144.62406	1.7869	0.0010245	-4.1168	-0.0023603	-2.3299	-0.0013358	573.316957066597	11.31	0.071957	11.302	11.254	11.326	-0.0075302	1212	28	0.8910048	0.016552806	0.88948536	361.1784	0	6.7098694						46	4	2	NaN	NaN	NaN	0.75376	1	14137	14137		3.9281	0.7165	1	3497.2			4413	7628	2612	2652	3466	3466					0.05753103397364612
EVRGPPPLPSP	11	Unmodified						0	0	0		ENST00000566802.5_1_16:74366359-74378726:-|nuORF	ENST00000566802.5_1_16:74366359-74378726:-|nuORF	ENST00000566802.5_1_16:74366359-74378726:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.319306	1144.62406	2.5112	0.0014397	-7.9854	-0.0045782	-5.4742	-0.0031385	573.3142711652108	11.332	0.071987	11.332	11.308	11.38	0	1212	31	0.8910048	0.01839298	0.8910048	361.1784		7.4558105	0.014743	-0.0019827	0.00075972	NaN	3.9281	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2782.7			4414	7628	2612	2652							0.05753103397364612
EVRWFRSQFS	10	Unmodified	_EVRWFRSQFS_					0	0	0		ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	ENST00000482636.1_1_6:26384034-26385742:+|nuORF	ENST00000482636.1_1_6:26384034-26385742:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3385609026001	2	671.338561	1340.66257	1.9502	0.0013092	-6.0598	-0.0040682	-4.1096	-0.0027589	671.8364783919508	26.288	0.072424	26.288	26.263	26.336	0	1056	34	0.9863805	0.020120203	0.9863805	399.14325	0	8.141724						48	4	2	NaN	NaN	NaN	0.73444	1	19418	19418		5.6942	0.50528	1	4364.8			4415	1886	2613	2653	3467	3467					0.005864090318937087
EVSADLTAI	9	Unmodified	_EVSADLTAI_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-3|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4778536176999	1	918.477854	917.470577	1.711	0.0015716	0.55851	0.00051298	2.2696	0.0020845	918.4783604818535	22.38	0.072359	22.38	22.356	22.429	0	345	58	1.4143922	0.033886075	1.4143922	287.51746	0	6.888336						147	4	3	NaN	NaN	NaN	0.02781	1	6369	6369		61.977	3.3776	1	18522			4416	1269	2614	2654	3468	3468					0.008540685610341825
EVSADLTAI	9	Unmodified						0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-3|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	918.477854	917.470577	1.2286	0.0011284	-0.87475	-0.00080344	0.35382	0.00032498	918.4774147828697	22.38	0.12028	22.366	22.342	22.462	-0.013733	345	49	1.4143922	0.028531194	1.4128729	287.51746		5.7998047	-0.0071465	-0.000636	-0.00075972	NaN	61.977	147	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18942			4417	1269	2614	2654							0.008540685610341825
EVSALLFVV	9	Unmodified	_EVSALLFVV_					0	0	0			REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5713600724002	1	976.57136	975.564084	1.0235	0.00099954	-1.5813	-0.0015443	-0.55782	-0.00054475	976.5694278708049	38.059	0.12013	38.059	38.035	38.155	0	246	43	1.4731345	0.02487731	1.4731345	299.19485	0	5.0526123						74	6	2	NaN	NaN	NaN	0.094712	1	7774	7774		36.586	0	1	5690.1	+		4418	12565	2615	2655	3469	3469					0.07532412734155969
EVSALLFVV	9	Unmodified	_EVSALLFVV_					0	0	0			REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5713600724002	1	976.57136	975.564084	2.0394	0.0019916	0.59278	0.00057889	2.6322	0.0025705	976.5729390261042	38.057	0.096142	38.06	38.012	38.108	0.0034256	243	40	1.4749115	0.02309668	1.473392	299.55573	0	4.6909485						76	5	2	NaN	NaN	NaN	0.12945	1	7621	7621		31.561	0	1	6197.3	+		4419	12565	2615	2655	3470	3470					0.07532412734155969
EVSALLFVV	9	Unmodified						0	0	0			REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	976.57136	975.564084	1.0235	0.00099954	-1.5813	-0.0015443	-0.55782	-0.00054475	976.5694278708049	38.059	0.12013	38.059	38.035	38.155	0	246	43	1.4731345	0.02487731	1.4731345	299.19485		5.0526123	-0.00048731	-0.00086477	-0.00012871	NaN	36.586	74	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5690.1	+		4420	12565	2615	2655							0.07532412734155969
EVSALLFVV	9	Unmodified						0	0	0			REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	REV__ENST00000512828.1_1_4:106629970-106630174:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	976.57136	975.564084	2.0394	0.0019916	0.59278	0.00057889	2.6322	0.0025705	976.5729390261042	38.057	0.096142	38.06	38.012	38.108	0.0034256	243	40	1.4749115	0.02309668	1.473392	299.55573		4.6909485	0.00048731	0.0012584	0.00012871	NaN	36.586	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6197.3	+		4421	12565	2615	2655							0.07532412734155969
EVSDDPEVR	9	Unmodified	_EVSDDPEVR_					0	0	0		ENST00000523427.1_1_8:128806909-128864219:+|nuORF	ENST00000523427.1_1_8:128806909-128864219:+|nuORF	ENST00000523427.1_1_8:128806909-128864219:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.24346049915	2	523.24346	1044.47237	0.81501	0.00042645	5.9274	0.0031015	6.7424	0.0035279	523.7472410146073	32.369	0.14479	32.365	32.316	32.461	-0.0037613	1293	49	0.84127116	0.02951163	0.8397517	341.40723	0	11.976501						154	7	2	NaN	NaN	NaN	0.39244	1	10180	10180		14.042	3.4366	1	21013			4422	7411	2616	2656	3471	3471					-0.048089224209888926
EVSDDPEVR	9	Unmodified						0	0	0		ENST00000523427.1_1_8:128806909-128864219:+|nuORF	ENST00000523427.1_1_8:128806909-128864219:+|nuORF	ENST00000523427.1_1_8:128806909-128864219:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.24346	1044.47237	1.0896	0.00057013	6.0172	0.0031484	7.1068	0.0037186	523.7468857238619	32.37	0.14479	32.37	32.321	32.466	0	1296	52	0.8394264	0.031361163	0.8394264	340.65857		12.727081	0.0024316	4.2443E-05	-0.00016267	NaN	14.042	174	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22278			4423	7411	2616	2656							-0.048089224209888926
EVSDVEIITR	10	Unmodified	_EVSDVEIITR_					0	0	0		ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8115102746	2	580.81151	1159.60847	1.9631	0.0011402	-2.0332	-0.0011809	-0.070085	-4.0706E-05	580.8108262032212	19.924	0.072201	19.924	19.9	19.972	0	1236	52	0.876284	0.03129351	0.876284	355.15652	0	12.683197						103	4	2	NaN	NaN	NaN	0.61836	1	15133	15133		13.638	2.6726	1	15736			4424	5748	2617	2657	3472	3472					0.03504772089650032
EVSDVEIITR	10	Unmodified	_EVSDVEIITR_					0	0	0		ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	ENST00000542613.5_1_9:95085577-95087599:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8115102746	2	580.81151	1159.60847	1.5951	0.00092646	-2.2547	-0.0013096	-0.65962	-0.00038311	580.8103991648943	19.924	0.096313	19.909	19.885	19.982	-0.014141	1239	46	0.87444305	0.027617872	0.8729236	354.41037	0	11.193481						126	5	3	NaN	NaN	NaN	0.23668	1	14626	14626		32.377	14.407	1	14133			4425	5748	2617	2657	3473	3473					0.03504772089650032
EVSPPVTVR	9	Unmodified	_EVSPPVTVR_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.2796490402	2	492.279649	982.544745	1.9217	0.00094601	-3.071	-0.0015118	-1.1493	-0.00056578	492.2785351824485	16.83	0.16782	16.83	16.806	16.973	0	1332	46	0.8172735	0.027707577	0.8172735	331.9403	0	11.253601						214	8	3	NaN	NaN	NaN	0.12866	1	7974	7974		31.675	13.876	1	40133			4426	4021	2618	2658	3474	3474					0.05277456443241135
EVSPPVTVR	9	Unmodified	_EVSPPVTVR_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2796490402	2	492.279649	982.544745	1.1869	0.0005843	-1.683	-0.00082853	-0.49612	-0.00024423	492.27873555094504	16.85	0.14382	16.837	16.789	16.933	-0.013294	1332	61	0.8172735	0.036937475	0.81575406	331.94028	0	15.00235						237	7	3	NaN	NaN	NaN	0.2345	1	7803	7803		23.118	7.9422	1	45280			4427	4021	2618	2658	3475	3475					0.05277456443241135
EVSSSGAK	8	Unmodified	_EVSSSGAK_					0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.3784739241001	1	764.378474	763.371197	2.2167	0.0016944	5.4578	0.0041718	7.6745	0.0058662	764.3829044807316	23.778	0.096432	23.765	23.717	23.813	-0.013048	576	49	1.2765218	0.028760076	1.2750024	260.26416	0	5.8637695						72	5	2	NaN	NaN	NaN	0.81756	1	4186	4186		6.8632	0	1	5323.2	+		4428	13596	2619	2659	3476	3476					-0.01995329333033169
EVSSSGAK	8	Unmodified						0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.378474	763.371197	1.7661	0.00135	4.7797	0.0036535	6.5458	0.0050034	764.3819953916022	23.778	0.096317	23.778	23.754	23.851	0	582	61	1.2729256	0.035957813	1.2729256	259.53094		7.3312683	0.0067115	-0.0002673	-0.0010384	NaN	6.8632	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5464.7	+		4429	13596	2619	2659							-0.01995329333033169
EVSSSGAK	8	Unmodified						0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.378474	763.371197	2.2167	0.0016944	5.4578	0.0041718	7.6745	0.0058662	764.3829044807316	23.778	0.096432	23.765	23.717	23.813	-0.013048	576	49	1.2765218	0.028760076	1.2750024	260.26416		5.8637695	-0.0067115	0.00025106	0.0010384	NaN	6.8632	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5323.2	+		4430	13596	2619	2659							-0.01995329333033169
EVSTDAAVL	9	Unmodified	_EVSTDAAVL_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4622035535	1	904.462204	903.454927	1.8372	0.0016617	-1.341	-0.0012129	0.49621	0.00044881	904.4637506327323	21.609	0.096386	21.609	21.585	21.681	0	381	52	1.3929803	0.030354619	1.3929803	283.22977	0	6.171875						120	5	3	NaN	NaN	NaN	0.12945	1	6143	6143		31.561	8.2266	1	11596			4431	5602	2620	2660	3477	3477					-0.0006621795599812685
EVSTDAAVL	9	Unmodified	_EVSTDAAVL_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4622035535	1	904.462204	903.454927	2.0099	0.0018179	-0.59599	-0.00053905	1.4139	0.0012789	904.4621092037839	21.609	0.12032	21.595	21.571	21.691	-0.013897	381	55	1.3929803	0.032141924	1.3914609	283.22977	0	6.5352783						131	6	3	NaN	NaN	NaN	0.12945	1	6019	6019		31.561	1.9627	1	12063			4432	5602	2620	2660	3478	3478					-0.0006621795599812685
EVTDVDSVVGR	11	Unmodified	_EVTDVDSVVGR_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.2987670401001	2	588.298767	1174.58298	2.3304	0.001371	-2.4235	-0.0014258	-0.09312	-5.4782E-05	588.2973294269898	18.508	0.11989	18.508	18.46	18.58	0	1221	52	0.885486	0.03126979	0.885486	358.8323	0	12.671692						120	6	3	NaN	NaN	NaN	0.11462	1	15631	15631		38.269	16.498	1	19199			4433	270	2621	2661	3479	3479					0.002672975672339817
EVTDVDSVVGR	11	Unmodified	_EVTDVDSVVGR_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.2987670401001	2	588.298767	1174.58298	1.7535	0.0010316	-2.2088	-0.0012995	-0.45537	-0.00026789	588.2978054133591	18.506	0.095926	18.492	18.468	18.564	-0.01395	1221	52	0.885486	0.031276584	0.88396657	358.83228	0	12.674438						118	5	3	NaN	NaN	NaN	0.3345	1	15073	15073		24.393	6.4237	1	21969			4434	270	2621	2661	3480	3480					0.002672975672339817
EVTDYAIAR	9	Unmodified	_EVTDYAIAR_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2667386302	2	519.266739	1036.51892	2.0102	0.0010438	-3.8373	-0.0019926	-1.8271	-0.00094876	519.2647153154803	17.189	0.2639	17.189	17.069	17.333	0	1311	79	0.83019954	0.047961593	0.83019954	336.94778	0	19.465881						397	12	3	NaN	NaN	NaN	0.03618	1	10062	10062		52.78	14.172	1	63272			4435	848	2622	2662	3481	3481					0.002125622009543804
EVTDYAIAR	9	Unmodified	_EVTDYAIAR_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2667386302	2	519.266739	1036.51892	1.7447	0.00090595	-2.588	-0.0013438	-0.8433	-0.0004379	519.265631855414	17.186	0.28793	17.172	17.076	17.364	-0.013569	1311	79	0.83019954	0.047966838	0.8286801	336.94778	0	19.467987						453	13	4	NaN	NaN	NaN	0.04743	1	9852	9852		48.002	0.5207	1	71239			4436	848	2622	2662	3482	3482					0.002125622009543804
EVTDYTTGR	9	Unmodified	_EVTDYTTGR_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2460031881001	2	521.246003	1040.47745	2.2534	0.0011746	-1.8363	-0.00095715	0.41715	0.00021744	521.2451220744581	13.805	0.24017	13.805	13.709	13.949	0	1329	73	0.81912065	0.0443058	0.81912065	332.4347	0	17.981232						300	11	2	NaN	NaN	NaN	0.059222	1	10221	10221		42.995	26.411	1	57298			4437	729	2623	2663	3483	3483					-0.04116618558373375
EVTDYTTGR	9	Unmodified	_EVTDYTTGR_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2460031881001	2	521.246003	1040.47745	1.3792	0.0007189	-0.6666	-0.00034746	0.71259	0.00037144	521.2456748751807	13.781	0.19168	13.77	13.699	13.89	-0.010672	1329	67	0.81912065	0.040618062	0.8176012	332.4347	0	16.484558						202	9	2	NaN	NaN	NaN	0.013696	1	10002	10002		81.699	44.397	1	51536			4438	729	2623	2663	3484	3484					-0.04116618558373375
EVTGFSFTL	9	Unmodified	_EVTGFSFTL_					0	0	0		ENST00000491253.1_1_X:37208646-37312479:+|nuORF	ENST00000491253.1_1_X:37208646-37312479:+|nuORF	ENST00000491253.1_1_X:37208646-37312479:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4985890598001	1	1000.49859	999.491313	1.6422	0.0016431	1.6986	0.0016995	3.3409	0.0033425	1000.4998781620828	26.432	0.072392	26.421	26.397	26.469	-0.011137	252	88	1.4695803	0.05152893	1.4680609	298.3734	0	10.462067						164	4	2	NaN	NaN	NaN	0.043119	1	8383	8383		49.833	5.5305	1	35781			4439	7269	2624	2664	3485	3485					-0.00845341059277871
EVTIVNILTNR	11	Unmodified	_EVTIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.36952668	2	636.369527	1270.7245	1.4843	0.00094459	-3.8417	-0.0024447	-2.3573	-0.0015001	636.3671758917955	27.35	0.048256	27.35	27.326	27.374	0	1119	40	0.9479278	0.023829699	0.9479278	383.7985	0	9.648224						60	3	2	NaN	NaN	NaN	0.73717	1	18254	18254		5.0169	0	1	7552.2			4440	5275	2625	2665	3486	3486					0.09996715660372502
EVTIVNILTNR	11	Unmodified	_EVTIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.36952668	2	636.369527	1270.7245	1.7637	0.0011223	-3.3318	-0.0021203	-1.5681	-0.00099792	636.3671888620697	27.373	0.072418	27.363	27.339	27.411	-0.010126	1122	40	0.9460945	0.023832321	0.9445751	383.05624	0	9.649261						55	4	2	NaN	NaN	NaN	0.51337	1	17439	17439		17.995	5.1227	1	4693.7			4441	5275	2625	2665	3487	3487					0.09996715660372502
EVTRILDGK	9	Unmodified	_EVTRILDGK_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7982059341001	2	515.798206	1029.58186	1.8621	0.00096048	-4.7197	-0.0024344	-2.8576	-0.0014739	515.7958280533068	15.126	0.14418	15.126	15.101	15.246	0	1287	70	0.8449601	0.042411506	0.8449601	342.96887	0	17.214813						243	7	4	NaN	NaN	NaN	0.039271	1	9771	9771		51.467	12.428	1	44745			4442	3383	2626	2666	3488	3488					0.06825127989009161
EVTRILDGK	9	Unmodified						0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.798206	1029.58186	1.2013	0.00061963	-2.1165	-0.0010917	-0.91518	-0.00047205	515.7970883158634	15.172	0.14408	15.16	15.136	15.28	-0.012202	1287	67	0.8449601	0.040574074	0.84344065	342.96884		16.469025	0.017205	0.00095325	-0.00075972	NaN	51.467	201	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35946			4443	3383	2626	2666							0.06825127989009161
EVTRILDGKR	10	Unmodified	_EVTRILDGKR_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.2349331209667	3	396.234933	1185.68297	1.479	0.00058603	-1.5501	-0.00061421	-0.071126	-2.8183E-05	396.23426207238964	13.397	0.096038	13.397	13.373	13.469	0	1479	31	0.72651637	0.018571138	0.72651637	441.5654	0	11.287231						68	5	2	NaN	NaN	NaN	0.28676	1	16041	16041		23.591	4.6663	1	9078.6			4444	3383	2627	2667	3489	3489					0.09755579691704952
EVTTPPNQR	9	Unmodified	_EVTTPPNQR_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2698126354001	2	521.269813	1040.52507	1.5277	0.00079634	-3.0767	-0.0016038	-1.549	-0.00080745	521.2691900828961	12.078	0.12002	12.07	12.046	12.166	-0.0081854	1341	34	0.8117308	0.020325482	0.81021136	329.43536	0	8.248962						76	6	2	NaN	NaN	NaN	0.33629	1	10014	10014		16.584	5.9792	1	5838.4			4445	1838	2628	2668	3490	3490					0.006430804324736528
EVTVLPPGRWD	11	Unmodified	_EVTVLPPGRWD_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.55930530346666	3	423.559305	1267.65609	1.6174	0.00068508	-4.1456	-0.0017559	-2.5282	-0.0010708	423.5573844149993	12.078	0.047975	12.07	12.046	12.094	-0.0081854	1503	31	0.711653	0.018587232	0.71013355	432.21036	0	11.288666						44	3	2	NaN	NaN	NaN	0.76937	1	17375	17375		0.70822	0	1	3316.9			4446	1898	2629	2669	3491	3491					0.03296471080511765
EVTVQEDSY	9	Unmodified	_EVTVQEDSY_					0	0	0		PLEKHO1|p.E145Q|1|0.18|ENSG00000023902|chr1:150157394-150157394|G/C|missense_variant	PLEKHO1|p.E145Q|1|0.18|ENSG00000023902|chr1:150157394-150157394|G/C|missense_variant	PLEKHO1|p.E145Q|1|0.18|ENSG00000023902|chr1:150157394-150157394|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.237843805	2	535.237844	1068.46113	1.8646	0.00099802	0.69394	0.00037142	2.5586	0.0013694	535.2381210757869	27.76	0.096495	27.76	27.736	27.833	0	1284	88	0.8468043	0.05351013	0.8468043	343.55234	0	21.70929						232	5	3	NaN	NaN	NaN	0.49672	1	11469	11469		9.746	0.78402	1	24382			4447	8098	2630	2670	3492	3492					-0.07035744515133047
EVVEFLKNPQK	11	Unmodified	_EVVEFLKNPQK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.8719021934501	2	665.871902	1329.72925	2.2839	0.0015208	-2.1054	-0.001402	0.17844	0.00011882	665.8707432401673	18.436	0.095892	18.436	18.388	18.484	0	1080	52	0.9717421	0.031118333	0.9717421	393.25272	0	12.593231						143	5	3	NaN	NaN	NaN	0.007231	1	19251	19251		71.985	37.531	1	15271			4448	3040	2631	2671	3493	3493					0.07757599803130688
EVVEFLKNPQK	11	Unmodified	_EVVEFLKNPQK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.2503602845	3	444.25036	1329.72925	1.7252	0.00076644	-0.40593	-0.00018034	1.3193	0.0005861	444.25048729008614	18.436	0.071941	18.436	18.388	18.46	0	1320	34	0.824661	0.02031231	0.824661	500.59216	0	12.330139						89	4	3	NaN	NaN	NaN	0.20314	1	19252	19252		26.989	19.048	1	9919.2			4449	3040	2631	2671	3494	3494					0.07757599803130688
EVVEFLKNPQK	11	Unmodified	_EVVEFLKNPQK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.2503602845	3	444.25036	1329.72925	1.8223	0.00080955	-1.4788	-0.00065696	0.34347	0.00015259	444.2487402465088	18.482	0.072046	18.468	18.42	18.492	-0.01395	1320	34	0.824661	0.02031231	0.8231416	500.59216	0	12.330139						61	4	2	NaN	NaN	NaN	0.7072	1	18394	18394		7.2894	5.2535	1	8194.4			4450	3040	2631	2671	3495	3495					0.07757599803130688
EVVEFLKNPQK	11	Unmodified	_EVVEFLKNPQK_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.8719021934501	2	665.871902	1329.72925	2.2362	0.001489	-1.4514	-0.00096645	0.78478	0.00052256	665.871453360028	18.482	0.096012	18.468	18.42	18.516	-0.01395	1077	49	0.9735726	0.029286265	0.9720532	393.9935	0	11.851807						145	5	3	NaN	NaN	NaN	0.026113	1	18395	18395		58.769	25.991	1	17525			4451	3040	2631	2671	3496	3496					0.07757599803130688
EVVGIIESR	9	Unmodified	_EVVGIIESR_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.28493138335006	2	501.284931	1000.55531	1.6603	0.0008323	-2.5394	-0.001273	-0.8791	-0.00044068	501.28383171597153	19.276	0.12006	19.276	19.204	19.324	0	1293	37	0.84127116	0.022138536	0.84127116	341.60217	0	8.989441						80	6	3	NaN	NaN	NaN	0.57723	1	8622	8622		6.4299	1.7009	1	6427			4452	490	2632	2672	3497	3497					0.05505439097669296
EVVGIIESR	9	Unmodified						0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.284931	1000.55531	1.5957	0.0007999	-3.8671	-0.0019385	-2.2714	-0.0011386	501.2836348062384	19.298	0.048059	19.284	19.26	19.308	-0.014141	1293	40	0.84127116	0.023982108	0.8397517	341.60217		9.738037	0.0039299	-0.00075787	-0.00075972	NaN	6.4299	78	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6646.3			4453	490	2632	2672							0.05505439097669296
EVVIYVVER	9	Unmodified	_EVVIYVVER_					0	0	0		ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3162315117501	2	553.316232	1104.61791	1.4978	0.00082873	-0.77856	-0.00043079	0.7192	0.00039795	553.3157347645244	22.043	0.14472	22.043	22.019	22.163	0	1227	88	0.88180584	0.053348422	0.88180584	357.60352	0	21.634644						225	7	3	NaN	NaN	NaN	0.07568	1	13055	13055		50.831	24.099	1	49343			4454	3186	2633	2673	3498	3498					0.06978585165848017
EVVIYVVER	9	Unmodified	_EVVIYVVER_					0	0	0		ENST00000514313.1_1_4:77053589-77055413:-|nuORF;nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3162315117501	2	553.316232	1104.61791	1.1772	0.00065139	-1.7908	-0.00099087	-0.61354	-0.00033948	553.3153947339351	22.066	0.12043	22.053	22.005	22.125	-0.013731	1230	79	0.8799654	0.047837377	0.878446	356.85718	0	19.39972						225	6	3	NaN	NaN	NaN	0.05973	1	12707	12707		55.592	29.477	1	43542			4455	3186	2633	2673	3499	3499					0.06978585165848017
EVVNIEGP	8	Unmodified	_EVVNIEGP_					0	0	0		DSPP|p.G418E|1|0.16|ENSG00000152591|chr4:87613915-87613915|G/A|missense_variant;ENSG00000152591|ENST00000651931|DSPP	DSPP|p.G418E|1|0.16|ENSG00000152591|chr4:87613915-87613915|G/A|missense_variant	DSPP|p.G418E|1|0.16|ENSG00000152591|chr4:87613915-87613915|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4410741809	1	856.441074	855.433798	1.1664	0.00099898	5.0553	0.0043296	6.2218	0.0053286	856.4441955612906	31.115	0.16889	31.115	31.091	31.259	0	417	76	1.3715409	0.044710636	1.3715409	279.10532	0	9.09848						276	8	3	NaN	NaN	NaN	0.78967	1	5472	5472		10.605	0	1	46500			4456	272	2634	2674	3500	3500					0.00029816735138865624
EVVPKMCLL	9	Unmodified	_EVVPKMCLL_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2850312313001	2	516.285031	1030.55551	1.6121	0.00083232	-8.6707	-0.0044766	-7.0586	-0.0036443	516.2801892395689	24.598	0.04826	24.598	24.598	24.647	0	1272	25	0.854179	0.01474303	0.854179	346.7065	0	5.9841003						36	3	2	NaN	NaN	NaN	0.58159	1	9809	9809		6.2502	0	1	6779.9	+		4457	10974	2635	2675	3501	3501					0.04145399501658176
EVVRLLVTR	9	Unmodified	_EVVRLLVTR_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	362.232752474	3	362.232752	1083.67643	1.9268	0.00069795	-2.7715	-0.0010039	-0.84465	-0.00030596	362.2315334083351	18.964	0.048019	18.964	18.964	19.012	0	1407	43	0.77102906	0.025929153	0.77102906	469.12567	0	15.776367						51	3	2	NaN	NaN	NaN	0.26848	1	12141	12141		20.936	6.9874	1	5203.4			4458	5975	2636	2676	3502	3502					0.1379368653099391
EVVRLLVTR	9	Unmodified	_EVVRLLVTR_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.8454904777001	2	542.84549	1083.67643	1.9011	0.001032	-1.0773	-0.00058479	0.82382	0.00044721	542.8448228068538	18.964	0.14399	18.964	18.916	19.06	0	1230	43	0.8799654	0.02576691	0.8799654	356.94214	0	10.451874						190	7	4	NaN	NaN	NaN	0.029412	1	12142	12142		66.544	41.982	1	47409			4459	5975	2636	2676	3503	3503					0.1379368653099391
EVVRLLVTR	9	Unmodified	_EVVRLLVTR_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.8454904777001	2	542.84549	1083.67643	1.6002	0.00086867	-0.41442	-0.00022496	1.1858	0.0006437	542.8452403295499	19.082	0.16817	19.068	18.996	19.164	-0.014059	1233	40	0.87812483	0.023927689	0.8766054	356.19556	0	9.705841						229	8	4	NaN	NaN	NaN	0.012379	1	11827	11827		95.291	47.288	1	48037			4460	5975	2636	2676	3504	3504					0.1379368653099391
EVVSGVVSK	9	Unmodified	_EVVSGVVSK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.26092497080003	2	452.260925	902.507297	0.79156	0.00035799	-2.1097	-0.00095415	-1.3182	-0.00059615	452.2601362155044	14.597	0.21602	14.597	14.549	14.765	0	1386	40	0.78399014	0.024062753	0.78399014	318.81158	0	9.785187						172	10	3	NaN	NaN	NaN	0.077759	1	6127	6127		39.039	10.144	1	23224			4461	4986	2637	2677	3505	3505					0.05214365177619129
EVVSGVVSK	9	Unmodified	_EVVSGVVSK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.26092497080003	2	452.260925	902.507297	0.91857	0.00041543	-1.1004	-0.00049768	-0.18185	-8.2243E-05	452.26048375874416	14.596	0.1437	14.585	14.561	14.704	-0.011219	1386	37	0.78399014	0.022210538	0.7824707	318.81158	0	9.031952						149	7	3	NaN	NaN	NaN	0.090258	1	6001	6001		37.231	12.669	1	24367			4462	4986	2637	2677	3506	3506					0.05214365177619129
EVVSLLLDR	9	Unmodified	_EVVSLLLDR_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.T1265I|1|0.23|ENSG00000132466|chr4:73120936-73120936|G/A|missense_variant;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.3084064796501	2	522.308406	1042.60226	1.7382	0.00090788	-1.6884	-0.00088187	0.049794	2.6008E-05	522.3074240811025	24.984	0.048279	24.972	24.948	24.996	-0.012392	1242	31	0.87260187	0.018412888	0.8710824	354.13025	0	7.472534						64	3	3	NaN	NaN	NaN	0.49999	1	10132	10132		9.6116	2.024	1	6341.5			4463	2713;2763	2638	2678	3507	3507					0.08266298648823067
EVVSLLLDR	9	Unmodified						0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ANKRD17|p.T1265I|1|0.23|ENSG00000132466|chr4:73120936-73120936|G/A|missense_variant;nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.308406	1042.60226	1.5001	0.00078352	-0.2739	-0.00014306	1.2262	0.00064046	522.3083113834901	24.96	0.048265	24.96	24.96	25.009	0	1242	34	0.87260187	0.020253062	0.87260187	354.13025		8.21936	-0.0057613	0.00047911	0.00075972	NaN	9.6116	65	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6338.5			4464	2713;2763	2638	2678							0.08266298648823067
EVVTEVVSR	9	Unmodified	_EVVTEVVSR_					0	0	0		ENST00000485351.1_1_10:44141510-44141681:-|nuORF;ENST00000395797.1_1_10:44140239-44144057:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	ENST00000485351.1_1_10:44141510-44141681:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.2823886944001	2	509.282389	1016.55022	1.6503	0.00084046	-0.10022	-5.1042E-05	1.5501	0.00078942	509.2819418155316	16.85	0.11983	16.837	16.789	16.909	-0.013294	1275	40	0.85233563	0.02396655	0.8508162	346.02106	0	9.729675						79	6	2	NaN	NaN	NaN	0.059222	1	9064	9064		42.995	10.542	1	7548.9			4465	6790	2639	2679	3508	3508					0.04261135235060465
EVVTFAVI	8	Unmodified	_EVVTFAVI_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.5029461562	1	877.502946	876.49567	0.86343	0.00075766	-0.90228	-0.00079175	-0.038848	-3.409E-05	877.5020237625613	33.359	0.096531	33.359	33.311	33.407	0	351	52	1.4108255	0.030322313	1.4108255	286.9905	0	6.1681824						126	5	3	NaN	NaN	NaN	0.45125	1	5758	5758		33.698	0	1	13047	+		4466	8429	2640	2680	3509	3509					0.05248168154275845
EVVTPRFLC	9	Unmodified	_EVVTPRFLC_					0	0	0		ENSG00000243649|ENST00000425368|CFB;ENST00000482312.1_1_6:31918808-31919804:+|nuORF;CON__Q3KUS7	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2838771383501	2	532.283877	1062.5532	1.6294	0.00086729	5.4645	0.0029087	7.0939	0.003776	532.2860483580373	28.918	0.096521	28.918	28.894	28.991	0	1248	46	0.8689189	0.027626812	0.8689189	352.54922	0	11.209106						93	5	3	NaN	NaN	NaN	0.51576	1	11242	11242		8.962	2.7118	1	9228.9		+	4467	6086	2641	2681	3510	3510					0.024426870882280127
EVYKEIYFQ	9	Unmodified	_EVYKEIYFQ_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.87288989900003	3	406.87289	1217.59684	1.5921	0.00064778	-9.763	-0.0039723	-8.1709	-0.0033245	406.87083751815385	15.366	0.048091	15.366	15.342	15.39	0	1485	25	0.72280174	0.014860153	0.72280174	439.1755	0	9.029022						32	3	2	NaN	NaN	NaN	0.59509	1	16930	16930		3.261	1.4108	1	2216.5	+		4468	13632	2642	2682	3511	3511					-0.003254249336578141
EVYKEIYFQ	9	Unmodified						0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	406.87289	1217.59684	1.5921	0.00064778	-9.763	-0.0039723	-8.1709	-0.0033245	406.87083751815385	15.366	0.048091	15.366	15.342	15.39	0	1485	25	0.72280174	0.014860153	0.72280174	439.1755		9.029022	-0.065001	0.00083159	0.00075972	NaN	3.261	32	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216.5	+		4469	13632	2642	2682							-0.003254249336578141
EVYKEIYFQ	9	Unmodified						0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	406.87289	1217.59684	3.4217	0.0013922	-10.925	-0.0044452	-7.5035	-0.003053	407.2024660624335	15.508	0.023952	15.496	15.472	15.496	-0.012202	1485	25	0.72280174	0.014860153	0.7212823	439.1755		9.029053	0.065001	-0.00058706	-0.00075972	NaN	3.261	25	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227.8	+		4470	13632	2642	2682							-0.003254249336578141
EVYSLHVST	9	Unmodified	_EVYSLHVST_					0	0	0			REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7612891115501	2	517.761289	1033.50803	2.0008	0.0010359	-3.3841	-0.0017522	-1.3833	-0.00071624	517.759274708502	11.74	0.16807	11.74	11.716	11.884	0	1251	94	0.8670771	0.05715102	0.8670771	351.92847	0	23.19638						201	8	2	NaN	NaN	NaN	0.29681	1	9919	9919		19.118	3.9429	1	19091	+		4471	9602	2643	2683	3512	3512					-0.007388401733123828
EVYSVDFMV	9	Oxidation (M)	_EVYSVDFM(Oxidation (M))V_		EVYSVDFM(1)V		EVYSVDFM(81)V	0	0	1		ENSG00000071894|ENST00000616140|CPSF1;ENST00000531480.2_1_8:145619271-145619611:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.4917891224	1	1104.49179	1103.48451	1.4741	0.0016282	1.3379	0.0014777	2.812	0.0031059	1104.4918851630218	27.277	0.14477	27.277	27.229	27.374	0	93	85	1.5635144	0.04950726	1.5635144	317.03784	0	10.038727						257	7	3	NaN	NaN	NaN	0.014046	1	12971	12971		80.639	19.367	1	22032			4472	783	2644	2684	3513	3513		80			-0.06309022002164966
EWAQAGCK	8	Unmodified	_EWAQAGCK_					0	0	0		ENST00000373538.7_1_9:127962932-127963058:+|nuORF	ENST00000373538.7_1_9:127962932-127963058:+|nuORF	ENST00000373538.7_1_9:127962932-127963058:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.3981635087	1	892.398164	891.390887	1.5747	0.0014053	-8.1576	-0.0072798	-6.5828	-0.0058745	892.3901000462027	29.136	0.12067	29.136	29.087	29.208	0	414	43	1.3733286	0.025028586	1.3733286	279.29077	0	5.0899963						132	6	3	NaN	NaN	NaN	0.81251	1	5941	5941		7.5404	1.45	1	8868.5			4473	6678	2645	2685	3514	3514					-0.059152765939415985
EWASRFWLW	9	Unmodified	_EWASRFWLW_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8141903493	2	640.81419	1279.61383	1.1281	0.00072292	-4.2212	-0.002705	-3.0931	-0.0019821	641.3123010169878	33.166	0.14477	33.166	33.118	33.262	0	1164	49	0.9204082	0.029377997	0.9204082	372.6285	0	11.893707						135	7	3	NaN	NaN	NaN	0.56671	1	18413	18413		6.8632	0.43328	1	10753			4474	2532	2646	2686	3515	3515					-0.01479459537222283
EWASRFWLW	9	Unmodified						0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.81419	1279.61383	1.6269	0.0010425	-5.3153	-0.0034061	-3.6884	-0.0023636	640.8085738774383	33.237	0.072414	33.235	33.186	33.259	-0.0024757	1152	34	0.92775106	0.020191908	0.9262317	375.6013		8.174713	0.034301	-0.00091309	0.0029117	NaN	6.8632	81	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5963			4475	2532	2646	2686							-0.01479459537222283
EWDQVTVYL	9	Unmodified	_EWDQVTVYL_					0	0	0		nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7822215189001	2	576.782222	1151.54989	1.0486	0.00060484	-1.9198	-0.0011073	-0.87115	-0.00050247	576.7803497720828	31.042	0.19309	31.042	31.018	31.211	0	1203	73	0.8965218	0.0441432	0.8965218	363.38873	0	17.89264						264	9	3	NaN	NaN	NaN	0.074859	1	14857	14857		39.459	10.563	1	47125			4476	293	2647	2687	3516	3516					-0.019822844848022214
EWDQVTVYL	9	Unmodified	_EWDQVTVYL_					0	0	0		nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7822215189001	2	576.782222	1151.54989	1.1298	0.00065167	-2.9525	-0.0017029	-1.8226	-0.0010513	576.7805427432335	31.041	0.14481	31.036	31.012	31.157	-0.0050716	1197	85	0.9001988	0.051494837	0.8986794	364.87915	0	20.872498						292	7	3	NaN	NaN	NaN	0.27608	1	14352	14352		20.449	2.479	1	53947			4477	293	2647	2687	3517	3517					-0.019822844848022214
EWEIMQLL	8	Unmodified	_EWEIMQLL_					0	0	0		ENST00000373616.9_1_6:36935956-36936193:-|nuORF	ENST00000373616.9_1_6:36935956-36936193:-|nuORF	ENST00000373616.9_1_6:36935956-36936193:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2704354121	2	531.270435	1060.52632	1.2822	0.00068118	-1.7746	-0.00094281	-0.49247	-0.00026163	531.2695171488361	33.118	0.33791	33.118	32.876	33.214	0	1278	85	0.85049206	0.051600754	0.85049206	345.08133	0	20.936646						454	15	3	NaN	NaN	NaN	0.40747	1	11121	11121		36.036	5.4262	1	76007			4478	6680	2648	2688	3518	3518					-0.0015242152298924339
EWFFFIFKWP	10	Unmodified	_EWFFFIFKWP_					0	0	0		ENST00000407008.7_1_17:26369807-26369933:+|nuORF	ENST00000407008.7_1_17:26369807-26369933:+|nuORF	ENST00000407008.7_1_17:26369807-26369933:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.8658915688	2	723.865892	1445.71723	0.50787	0.00036763	-8.4995	-0.0061525	-7.9917	-0.0057849	723.8587775364587	31.356	0.096552	31.356	31.284	31.38	0	1020	55	1.0083145	0.032886803	1.0083145	407.71625	0	13.297913						144	5	3	NaN	NaN	NaN	0.75966	1	20368	20368		3.9685	1.079	1	21599			4479	6849	2649	2689	3519	3519					0.012200278505815731
EWFPPIDGHFF	11	Unmodified	_EWFPPIDGHFF_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3245878601	2	696.324588	1390.63462	1.1042	0.00076887	-9.6028	-0.0066867	-8.4987	-0.0059178	696.8182207147104	32.732	0.19303	32.732	32.635	32.828	0	1086	103	0.9680805	0.062266886	0.9680805	391.59442	0	25.187317						587	9	3	NaN	NaN	NaN	0.74155	1	19984	19984		4.7291	0.41892	1	61908			4480	5279	2650	2690	3520	3520					-0.045069139482166065
EWFPPIDGHFF	11	Unmodified	_EWFPPIDGHFF_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3245878601	2	696.324588	1390.63462	1.1874	0.00082681	-4.2634	-0.0029687	-3.076	-0.0021419	696.8220611810787	32.563	0.26542	32.563	32.37	32.635	0	1071	109	0.977233	0.06592965	0.977233	395.29663	0	26.668945						637	12	3	NaN	NaN	NaN	0.25335	1	19985	19985		27.296	16.936	1	70122			4481	5279	2650	2690	3521	3521					-0.045069139482166065
EWFWWYWQKEK	11	Unmodified	_EWFWWYWQKEK_					0	0	0		ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF	ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4039008135999	2	858.403901	1714.79325	1.8299	0.0015708	-3.4126	-0.0029294	-1.5827	-0.0013586	858.4001855703258	27.736	0.096546	27.736	27.712	27.808	0	888	46	1.088497	0.027274728	1.088497	439.48322	0	11.012268						102	5	3	NaN	NaN	NaN	0.76654	1	20843	20843		2.5994	0.89725	1	6766.9			4482	292	2651	2691	3522	3522					-0.03555620039946916
EWFWWYWQKEK	11	Unmodified	_EWFWWYWQKEK_					0	0	0		ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF	ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4039008135999	2	858.403901	1714.79325	1.2053	0.0010346	-5.9186	-0.0050805	-4.7133	-0.0040459	858.8991844438824	27.735	0.072384	27.726	27.726	27.798	-0.009552	888	40	1.088497	0.023638248	1.0869776	439.48322	0	9.543976						93	4	3	NaN	NaN	NaN	0.76654	1	19810	19810		2.5994	2.0022	1	6673			4483	292	2651	2691	3523	3523					-0.03555620039946916
EWIPLAWKW	9	Unmodified	_EWIPLAWKW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.8293090972501	2	614.829309	1227.64407	0.55708	0.00034251	-2.7306	-0.0016789	-2.1735	-0.0013364	614.8281938935328	32.852	0.12067	32.852	32.804	32.925	0	1182	46	0.9093879	0.027555227	0.9093879	368.33328	0	11.160828						170	6	4	NaN	NaN	NaN	0.25448	1	17191	17191		21.835	13.557	1	17523			4484	1997	2652	2692	3524	3524					0.03934899127989411
EWIPLAWKW	9	Unmodified	_EWIPLAWKW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.8293090972501	2	614.829309	1227.64407	0.58903	0.00036215	-2.8567	-0.0017564	-2.2677	-0.0013942	614.8269416436532	32.899	0.14472	32.897	32.849	32.993	-0.0024757	1176	46	0.9130621	0.027549326	0.91154265	369.82147	0	11.158417						152	7	3	NaN	NaN	NaN	0.12328	1	16498	16498		32.453	18.99	1	14782			4485	1997	2652	2692	3525	3525					0.03934899127989411
EWKPGSKEGA	10	Unmodified	_EWKPGSKEGA_					0	0	0		ENST00000418983.1_1_6:29760019-29760421:-|nuORF	ENST00000418983.1_1_6:29760019-29760421:-|nuORF	ENST00000418983.1_1_6:29760019-29760421:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5370998311	1	1088.5371	1087.52982	2.0085	0.0021864	-10.699	-0.011647	-8.6908	-0.0094603	1089.5287134257837	30.366	0.1448	30.366	30.294	30.439	0	117	97	1.5493695	0.056567788	1.5493695	314.22662	0	11.472473						377	7	3	NaN	NaN	NaN	0.60686	1	12273	12273		14.425	0.68797	1	39099			4486	6901	2653	2693	3526	3526					-0.0104403542475211
EWLAPCVI	8	Unmodified	_EWLAPCVI_					0	0	0			REV__nc|ENSG00000198862|O94822-2|LTN1	REV__nc|ENSG00000198862|O94822-2|LTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.74131383189996	2	465.741314	929.468075	1.0719	0.00049923	6.1604	0.0028692	7.2323	0.0033684	465.7446941328248	23.899	0.048227	23.899	23.851	23.899	0	1365	61	0.7969414	0.03697747	0.7969414	323.9373	0	15.030457						122	3	3	NaN	NaN	NaN	0.72043	1	6590	6590		17.78	2.3177	1	14241	+		4487	11200	2654	2694	3527	3527					0.0005194162239376965
EWLKITEPSVH	11	Unmodified	_EWLKITEPSVH_					0	0	0			REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8562521292499	2	669.856252	1337.69795	1.9029	0.0012747	0.99257	0.00066488	2.8955	0.0019395	669.8569968392814	26.408	0.16895	26.408	26.336	26.505	0	1125	91	0.9442611	0.054959178	0.9442611	382.10803	0	22.23996						338	8	4	NaN	NaN	NaN	0.40559	1	19373	19373		21.85	11.49	1	56545	+		4488	8557	2655	2695	3528	3528					0.04261026769017917
EWLKITEPSVH	11	Unmodified						0	0	0			REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	REV__ENST00000464324.5_1_11:64494776-64507712:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	669.856252	1337.69795	1.9029	0.0012747	0.99257	0.00066488	2.8955	0.0019395	669.8569968392814	26.408	0.16895	26.408	26.336	26.505	0	1125	91	0.9442611	0.054959178	0.9442611	382.10803		22.23996	0.0057055	0.00019269	0.00075972	NaN	21.85	338	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56545	+		4489	8557	2655	2695							0.04261026769017917
EWLSSLWDWY	10	Unmodified	_EWLSSLWDWY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.81405296355	2	692.814053	1383.61355	1.7723	0.0012279	0.91568	0.0006344	2.688	0.0018623	693.3149627404229	28.194	0.072422	28.185	28.137	28.209	-0.0089779	1071	28	0.977233	0.01647085	0.97571355	395.31635	0	6.662903						46	4	2	NaN	NaN	NaN	0.77884	1	18986	18986		0.79988	0	1	2856.8			4490	6058	2656	2696	3529	3529					-0.06290924047721091
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.30091579855	2	614.300916	1226.58728	0.99314	0.00061009	-1.817	-0.0011162	-0.82388	-0.00050611	614.8018634793417	23.947	0.19295	23.947	23.851	24.044	0	1149	67	0.92958635	0.04038167	0.92958635	376.51794	0	16.35614						235	9	3	NaN	NaN	NaN	0.028569	1	17147	17147		60.984	36.422	1	33462			4491	939	2657	2697	3530	3530					-0.01695148428552784
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.30091579855	2	614.300916	1226.58728	1.0085	0.00061951	1.28	0.0007863	2.2885	0.0014058	614.3018686483654	24.043	0.28949	24.031	23.91	24.199	-0.012749	1146	58	0.93142134	0.034873188	0.9299019	377.2612	0	14.1249695						313	13	2	NaN	NaN	NaN	0.12866	1	16457	16457		31.675	13.442	1	52441			4492	939	2657	2697	3531	3531					-0.01695148428552784
EWPQEGPGG	9	Unmodified	_EWPQEGPGG_					0	0	0			REV__ENST00000267406.10_1_14:24897604-24898679:-|nuORF	REV__ENST00000267406.10_1_14:24897604-24898679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4108366850002	1	956.410837	955.40356	1.267	0.0012118	6.6878	0.0063963	7.9548	0.0076081	956.4178972522727	32.948	0.16877	32.945	32.921	33.09	-0.0024757	1194	43	0.902037	0.02573353	0.9005176	183.25827	0	5.2280273						149	8	3	NaN	NaN	NaN	0.67989	1	7066	7066		0.92586	0.5302	1	13385	+		4493	11578	2658	2698	3532	3532					-0.07592541930034713
EWPQEGPGG	9	Unmodified						0	0	0			REV__ENST00000267406.10_1_14:24897604-24898679:-|nuORF	REV__ENST00000267406.10_1_14:24897604-24898679:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	956.410837	955.40356	1.267	0.0012118	6.6878	0.0063963	7.9548	0.0076081	956.4178972522727	32.948	0.16877	32.945	32.921	33.09	-0.0024757	1194	43	0.902037	0.02573353	0.9005176	183.25827		5.2280273	-0.0017998	-0.00029351	0.00015938	NaN	0.92586	149	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13385	+		4494	11578	2658	2698							-0.07592541930034713
EWQEVSCPA	9	Unmodified	_EWQEVSCPA_					0	0	0		ENST00000537350.5_2_1:167674554-167674761:+|nuORF	ENST00000537350.5_2_1:167674554-167674761:+|nuORF	ENST00000537350.5_2_1:167674554-167674761:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.4404222539	1	1048.44042	1047.43315	2.1923	0.0022985	-3.3259	-0.003487	-1.1336	-0.0011885	1048.4361666887564	26.07	0.14483	26.059	26.011	26.156	-0.011137	225	64	1.4855686	0.03728628	1.4840492	301.4317	0	7.565613						170	7	2	NaN	NaN	NaN	0.032826	1	10301	10301		55.413	12.418	1	17312			4495	7477	2659	2699	3533	3533					-0.08867345976227625
EWRGQGPL	8	Unmodified	_EWRGQGPL_					0	0	0		ENST00000318967.6_2_1:153700611-153701247:+|nuORF	ENST00000318967.6_2_1:153700611-153701247:+|nuORF	ENST00000318967.6_2_1:153700611-153701247:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4791910217001	1	942.479191	941.471915	1.6203	0.0015271	5.2391	0.0049378	6.8595	0.0064649	942.484707909753	27.929	0.07239	27.929	27.881	27.953	0	333	58	1.4215236	0.033868074	1.4215236	288.85815	0	6.8821106						116	4	3	NaN	NaN	NaN	0.65075	1	6845	6845		22.126	1.5709	1	27303			4496	6474	2660	2700	3534	3534					-0.0011625255953049418
EWRWTHPFFS	10	Unmodified	_EWRWTHPFFS_					0	0	0			REV__ENST00000272839.7_2_2:208486544-208488957:-|nuORF	REV__ENST00000272839.7_2_2:208486544-208488957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.8278290408	2	696.827829	1391.64111	0.58886	0.00041033	-8.5442	-0.0059538	-7.9553	-0.0055435	696.8226559454885	32.562	0.19308	32.558	32.486	32.679	-0.0031052	1074	94	0.9754029	0.05676359	0.97388345	394.55356	0	22.96103						366	9	2	NaN	NaN	NaN	0.68669	1	19060	19060		8.962	0	1	41516	+		4497	11590	2661	2701	3535	3535					-0.039049759968293074
EWSFLTGW	8	Unmodified	_EWSFLTGW_					0	0	0			REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2399925634501	2	513.239993	1024.46543	1.0822	0.00055545	8.0062	0.0041091	9.0884	0.0046645	513.2440777542004	13.565	0.16784	13.555	13.555	13.723	-0.010098	1299	70	0.8375814	0.042439044	0.83606195	339.9962	0	17.227112						173	8	2	NaN	NaN	NaN	0.8439	1	9363	9363		3.1533	0.36816	1	18904	+		4498	11612	2662	2702	3536	3536					-0.04582190510905093
EWSFLTGW	8	Unmodified						0	0	0			REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.239993	1024.46543	2.3861	0.0012246	3.8869	0.0019949	6.273	0.0032196	513.242484860577	13.589	0.048054	13.589	13.565	13.613	0	1302	85	0.8357362	0.051673353	0.8357362	339.2472		20.975555	0.016714	-0.0019847	-0.00016287	NaN	3.1533	89	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13087	+		4499	11612	2662	2702							-0.04582190510905093
EWSFLTGW	8	Unmodified						0	0	0			REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.239993	1024.46543	1.0822	0.00055545	8.0062	0.0041091	9.0884	0.0046645	513.2440777542004	13.565	0.16784	13.555	13.555	13.723	-0.010098	1299	70	0.8375814	0.042439044	0.83606195	339.9962		17.227112	-0.016714	0.0022436	0.00016287	NaN	3.1533	173	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18904	+		4500	11612	2662	2702							-0.04582190510905093
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3586276427	2	723.358628	1444.7027	0.6583	0.00047619	-1.3637	-0.00098647	-0.70544	-0.00051028	723.3576724919841	31.428	0.21723	31.428	31.356	31.573	0	1020	55	1.0083145	0.032886803	1.0083145	407.71893	0	13.298004						336	10	4	NaN	NaN	NaN	0.017009	1	20349	20349		63.995	48.173	1	50304			4501	2095	2663	2703	3537	3537					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3586276427	2	723.358628	1444.7027	0.66029	0.00047763	1.2234	0.00088494	1.8837	0.0013626	723.8588631491789	31.621	0.096535	31.621	31.597	31.694	0	1020	43	1.0083145	0.025578558	1.0083145	407.71893	0	10.3428955						110	5	3	NaN	NaN	NaN	0.021226	1	20351	20351		61.575	45.753	1	9099.7			4502	2095	2663	2703	3538	3538					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3586276427	2	723.358628	1444.7027	1.7351	0.0012551	0.18581	0.0001344	1.9209	0.0013895	723.3594710958824	30.511	0.26546	30.511	30.439	30.704	0	1017	121	1.010141	0.07309747	1.010141	408.45752	0	29.557495						1019	12	5	NaN	NaN	NaN	6.5213E-36	1	20352	20352		166.84	132.93	1	839090			4503	2095	2663	2703	3539	3539					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3586276427	2	723.358628	1444.7027	0.95161	0.00068835	-2.1651	-0.0015662	-1.2135	-0.00087782	723.858413237974	31.258	0.33786	31.253	31.06	31.398	-0.0050716	1020	58	1.0083145	0.034711897	1.006795	407.71896	0	14.036041						420	15	4	NaN	NaN	NaN	0.043578	1	19380	19380		51.467	30.954	1	50830			4504	2095	2663	2703	3540	3540					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3586276427	2	723.358628	1444.7027	0.61383	0.00044402	-1.2166	-0.00088006	-0.60279	-0.00043604	723.3580966288557	31.5	0.096533	31.495	31.471	31.568	-0.0044174	1017	55	1.010141	0.032886803	1.0086216	408.45752	0	13.298004						121	5	2	NaN	NaN	NaN	0.07051	1	19381	19381		44.633	32.895	1	25878			4505	2095	2663	2703	3541	3541					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified	_EWSPYTKIFQF_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3586276427	2	723.358628	1444.7027	1.753	0.0012681	-0.54151	-0.0003917	1.2115	0.00087638	723.3587453447228	30.51	0.38603	30.505	30.432	30.818	-0.0057545	1014	118	1.0119673	0.07127392	1.0104479	409.196	0	28.820099						1325	17	6	NaN	NaN	NaN	6.7415E-69	1	19382	19382		204.68	153.22	1	873620			4506	2095	2663	2703	3542	3542					-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified						0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	723.358628	1444.7027	0.56179	0.00040637	-1.0548	-0.00076302	-0.49304	-0.00035664	723.8592494669351	31.187	0.12068	31.187	31.115	31.235	0	1020	49	1.0083145	0.029229581	1.0083145	407.71893		11.819153	-0.15413	9.1679E-05	-0.00015356	NaN	44.633	143	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17133			4507	2095	2663	2703							-0.0018608908821988734
EWSPYTKIFQF	11	Unmodified						0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	723.358628	1444.7027	0.74899	0.00054179	-3.381	-0.0024457	-2.632	-0.0019039	723.3559524075495	31.62	0.024153	31.616	31.616	31.64	-0.0044155	1020	34	1.0083145	0.02009201	1.006795	407.71896		8.124359	-0.0027452	-0.0030729	-0.00075972	NaN	61.575	42	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6894.4			4508	2095	2663	2703							-0.0018608908821988734
EWTHSDGG	8	Unmodified	_EWTHSDGG_					0	0	0			REV__ENST00000525329.1_1_11:6502313-6502430:-|nuORF	REV__ENST00000525329.1_1_11:6502313-6502430:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.3482364282	1	888.348236	887.34096	2.2457	0.0019949	-9.3181	-0.0082777	-7.0724	-0.0062828	888.3395794379364	25.732	0.1689	25.732	25.708	25.877	0	420	64	1.3697531	0.037552834	1.3697531	278.58298	0	7.6375732						198	8	2	NaN	NaN	NaN	0.76633	1	5899	5899		13.737	0	1	14913	+		4509	12619	2664	2704	3543	3543					-0.1072168799822748
EWTHSDGG	8	Unmodified						0	0	0			REV__ENST00000525329.1_1_11:6502313-6502430:-|nuORF	REV__ENST00000525329.1_1_11:6502313-6502430:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	888.348236	887.34096	2.2457	0.0019949	-9.3181	-0.0082777	-7.0724	-0.0062828	888.3395794379364	25.732	0.1689	25.732	25.708	25.877	0	420	64	1.3697531	0.037552834	1.3697531	278.58298		7.6375732	0	0	0	NaN	13.737	198	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14913	+		4510	12619	2664	2704							-0.1072168799822748
EWTVDTSKLVF	11	Unmodified	_EWTVDTSKLVF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8428104029999	2	662.84281	1323.67107	1.3489	0.00089412	-3.3221	-0.002202	-1.9732	-0.0013079	662.8407521911731	29.425	0.31372	29.425	29.256	29.57	0	1113	43	0.9515937	0.025658667	0.9515937	385.11703	0	10.384247						227	14	2	NaN	NaN	NaN	0.72342	1	19149	19149		5.9198	1.9513	1	22984			4511	1143	2665	2705	3544	3544					0.02217918157839449
EWTVDTSKLVF	11	Unmodified	_EWTVDTSKLVF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8428104029999	2	662.84281	1323.67107	2.028	0.0013443	-1.2189	-0.00080795	0.80911	0.00053631	662.842334581468	28.75	0.33782	28.75	28.653	28.991	0	1110	94	0.95342636	0.056830943	0.95342636	385.8587	0	22.999908						716	15	5	NaN	NaN	NaN	6.5213E-36	1	19152	19152		166.84	130.22	1	560890			4512	1143	2665	2705	3545	3545					0.02217918157839449
EWTVDTSKLVF	11	Unmodified	_EWTVDTSKLVF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8428104029999	2	662.84281	1323.67107	1.4881	0.00098638	-0.65811	-0.00043622	0.82999	0.00055015	663.344233379088	29.642	0.19308	29.642	29.546	29.739	0	1113	52	0.9515937	0.031148553	0.9515937	385.11703	0	12.606049						162	9	3	NaN	NaN	NaN	0.17797	1	19153	19153		32.377	20.328	1	17515			4513	1143	2665	2705	3546	3546					0.02217918157839449
EWTVDTSKLVF	11	Unmodified	_EWTVDTSKLVF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8428104029999	2	662.84281	1323.67107	2.1818	0.0014462	-0.65373	-0.00043332	1.528	0.0010129	662.8430515558819	28.749	0.28962	28.74	28.644	28.933	-0.0083504	1107	103	0.9552588	0.06232065	0.9537394	386.6003	0	25.221619						747	13	6	NaN	NaN	NaN	4.195E-18	1	18298	18298		134.33	95.291	1	538240			4514	1143	2665	2705	3547	3547					0.02217918157839449
EWTVDTSKLVF	11	Unmodified						0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	662.84281	1323.67107	1.6439	0.0010897	-0.99815	-0.00066161	0.64577	0.00042804	662.8424998681066	29.424	0.12064	29.417	29.344	29.465	-0.0077209	1116	40	0.94976085	0.023824632	0.9482414	384.37524		9.641998	-0.0042494	0.0015137	-0.0016761	NaN	5.9198	121	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9069.9			4515	1143	2665	2705							0.02217918157839449
EWTVDTSKLVF	11	Unmodified						0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	662.84281	1323.67107	1.7655	0.0011703	-5.0469	-0.0033453	-3.2814	-0.0021751	662.8406019437854	29.062	0.072409	29.055	29.055	29.127	-0.0077209	1110	55	0.95342636	0.032982588	0.9519069	385.85873		13.348297	0.1526	-0.0045405	-0.00075972	NaN	166.84	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6847.4			4516	1143	2665	2705							0.02217918157839449
EWVFHLKWWWH	11	Unmodified	_EWVFHLKWWWH_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.4093205425002	2	827.409321	1652.80409	1.0709	0.00088605	2.6809	0.0022182	3.7518	0.0031043	827.9127539886696	30.028	0.12066	30.021	29.997	30.118	-0.0064106	915	37	1.072127	0.021837473	1.0706075	433.00385	0	8.81955						131	6	3	NaN	NaN	NaN	0.76654	1	19781	19781		2.5994	1.2683	1	13165	+		4517	10504	2666	2706	3548	3548					0.003798271250389007
EWVFHLKWWWH	11	Unmodified						0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	827.409321	1652.80409	2.1121	0.0017476	2.7246	0.0022543	4.8367	0.0040019	827.4113544216781	30.029	0.12072	30.029	29.98	30.101	0	918	43	1.070307	0.025477052	1.070307	432.26886		10.28949	0.00367	3.1441E-05	-0.00015022	NaN	2.5994	150	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15822	+		4518	10504	2666	2706							0.003798271250389007
EWVFHLKWWWH	11	Unmodified						0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	827.409321	1652.80409	1.0709	0.00088605	2.6809	0.0022182	3.7518	0.0031043	827.9127539886696	30.028	0.12066	30.021	29.997	30.118	-0.0064106	915	37	1.072127	0.021837473	1.0706075	433.00385		8.81955	-0.00367	-4.0715E-05	0.00015022	NaN	2.5994	131	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13165	+		4519	10504	2666	2706							0.003798271250389007
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5302235391998	1	1085.53022	1084.52295	1.3901	0.001509	0.65286	0.0007087	2.043	0.0022177	1085.5302908258839	34.806	0.21708	34.806	34.734	34.951	0	72	85	1.5758814	0.04947579	1.5758814	319.61456	0	10.034485						289	10	3	NaN	NaN	NaN	0.032325	1	12161	12161		58.599	31.868	1	24346			4520	5831	2667	2707	3549	3549					-0.015933483053458986
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5302235391998	1	1085.53022	1084.52295	1.2467	0.0013533	0.56805	0.00061663	1.8147	0.0019699	1085.530250284133	34.829	0.16869	34.828	34.732	34.901	-0.0006485	69	82	1.5776473	0.04770124	1.5761279	319.97272	0	9.674591						254	8	3	NaN	NaN	NaN	0.13037	1	11846	11846		41.785	8.0862	1	24208			4521	5831	2667	2707	3550	3550					-0.015933483053458986
EYAEAEMPAPL	11	Unmodified	_EYAEAEMPAPL_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.7788215502001	2	610.778822	1219.54309	0.88432	0.00054012	8.6212	0.0052656	9.5055	0.0058058	610.7849220895865	21.031	0.09623	21.031	20.983	21.079	0	1146	76	0.93142134	0.045875907	0.93142134	377.28543	0	18.582672						123	5	2	NaN	NaN	NaN	0.66717	1	16964	16964		9.6116	2.024	1	14561	+		4522	10835	2668	2708	3551	3551					-0.0578996542767527
EYAEAEMPAPL	11	Unmodified						0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	610.778822	1219.54309	0.88432	0.00054012	8.6212	0.0052656	9.5055	0.0058058	610.7849220895865	21.031	0.09623	21.031	20.983	21.079	0	1146	76	0.93142134	0.045875907	0.93142134	377.28543		18.582672	0	0	0	NaN	9.6116	123	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14561	+		4523	10835	2668	2708							-0.0578996542767527
EYAEWLRNHF	10	Unmodified	_EYAEWLRNHF_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.5509212641333	3	455.550921	1363.63093	1.5338	0.00069872	0.39283	0.00017896	1.9266	0.00087768	455.5504586290377	23.128	0.07234	23.128	23.128	23.2	0	1404	31	0.77288127	0.018524826	0.77288127	469.04062	0	11.242218						49	4	2	NaN	NaN	NaN	0.75556	1	19729	19729		4.2489	3.5407	1	4674.5			4524	3508	2669	2709	3552	3552					-0.03633583722057665
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7794818647001	2	577.779482	1153.54441	1.6464	0.00095127	-0.45062	-0.00026036	1.1958	0.00069091	577.7796551597572	29.28	0.16889	29.28	29.256	29.425	0	1176	76	0.9130621	0.045945227	0.9130621	370.08548	0	18.622711						298	8	4	NaN	NaN	NaN	0.062072	1	14918	14918		41.785	15.053	1	85344			4525	2671	2670	2710	3553	3553					-0.026219632766242285
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7794818647001	2	577.779482	1153.54441	1.2458	0.00071978	2.0494	0.0011841	3.2952	0.0019039	578.2820594796256	29.304	0.26543	29.296	29.2	29.465	-0.0077229	1176	82	0.9130621	0.04962623	0.91154265	370.08548	0	20.114685						478	12	4	NaN	NaN	NaN	0.049695	1	14424	14424		47.04	8.1223	1	104440			4526	2671	2670	2710	3554	3554					-0.026219632766242285
EYAKIHDLL	9	Unmodified	_EYAKIHDLL_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.3005814475501	2	551.300581	1100.58661	1.3684	0.00075441	0.44548	0.0002456	1.8139	0.001	551.803131702826	20.141	0.19219	20.141	20.069	20.261	0	1182	109	0.9093879	0.066229165	0.9093879	368.80566	0	26.859467						217	9	4	NaN	NaN	NaN	0.084037	1	12875	12875		38.131	17.682	1	31551			4527	4783	2671	2711	3555	3555					0.04034012131774034
EYAKIHDLL	9	Unmodified	_EYAKIHDLL_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3005814475501	2	551.300581	1100.58661	1.4322	0.00078957	-0.88381	-0.00048724	0.5484	0.00030233	551.2999026392953	20.213	0.12031	20.198	20.15	20.271	-0.014141	1182	73	0.9093879	0.044119358	0.90786844	368.80566	0	17.892792						189	6	4	NaN	NaN	NaN	0.070055	1	12538	12538		40.154	20.99	1	31299			4528	4783	2671	2711	3556	3556					0.04034012131774034
EYASLIGWKF	10	Unmodified	_EYASLIGWKF_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3162315117501	2	607.316232	1212.61791	1.2318	0.00074807	-4.5511	-0.0027639	-3.3193	-0.0020159	607.3133657436856	29.353	0.19309	29.353	29.353	29.546	0	1164	67	0.9204082	0.040390372	0.9204082	372.84827	0	16.361755						282	9	3	NaN	NaN	NaN	0.013189	1	16797	16797		90.252	46.476	1	115810			4529	3142	2672	2712	3557	3557					0.020105851658399843
EYASLIGWKF	10	Unmodified	_EYASLIGWKF_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3162315117501	2	607.316232	1212.61791	0.87626	0.00053217	-5.9245	-0.0035981	-5.0483	-0.0030659	607.3116934581087	29.376	0.14477	29.368	29.344	29.489	-0.0077229	1164	67	0.9204082	0.04038167	0.91888875	372.84827	0	16.358215						343	7	4	NaN	NaN	NaN	0.23933	1	16124	16124		45.827	20.026	1	121810			4530	3142	2672	2712	3558	3558					0.020105851658399843
EYASTLQNL	9	Unmodified	_EYASTLQNL_					0	0	0		ENST00000502752.1_1_5:108133871-108177539:+|nuORF;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER	ENST00000502752.1_1_5:108133871-108177539:+|nuORF	ENST00000502752.1_1_5:108133871-108177539:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5102163786	1	1038.51022	1037.50294	0.84005	0.0008724	0.48527	0.00050396	1.3253	0.0013764	1038.5107949524622	33.48	0.12067	33.48	33.407	33.528	0	225	112	1.4855686	0.06561828	1.4855686	301.4692	0	13.31604						167	6	2	NaN	NaN	NaN	0.41766	1	10099	10099		13.003	1.4544	1	14525			4531	3738	2673	2713	3559	3559					-0.014311440359506378
EYASTLQNL	9	Unmodified						0	0	0		ENST00000502752.1_1_5:108133871-108177539:+|nuORF;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER	ENST00000502752.1_1_5:108133871-108177539:+|nuORF	ENST00000502752.1_1_5:108133871-108177539:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1038.51022	1037.50294	0.61381	0.00063745	2.7803	0.0028874	3.3941	0.0035248	1038.5135087315573	33.478	0.096535	33.476	33.428	33.525	-0.0018501	222	100	1.4873441	0.05856788	1.4858247	301.8295		11.885284	-0.0016046	0.0010215	0.00012805	NaN	13.003	156	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12978			4532	3738	2673	2713							-0.014311440359506378
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2896824102502	2	518.289682	1034.56481	1.4469	0.00074991	-1.1438	-0.00059282	0.3031	0.00015709	518.2893383049615	34.276	0.096474	34.276	34.252	34.348	0	1257	46	0.86339295	0.027638733	0.86339295	350.42844	0	11.217834						82	5	2	NaN	NaN	NaN	0.49672	1	9984	9984		9.746	2.2056	1	8496.7			4533	2933	2674	2714	3560	3560					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.5720883539002	1	1035.57209	1034.56481	1.4084	0.0014585	0.75787	0.00078483	2.1663	0.0022434	1035.5728731028128	34.276	0.12057	34.276	34.252	34.372	0	123	103	1.5458313	0.060135126	1.5458313	313.7101	0	12.203796						233	6	3	NaN	NaN	NaN	0.019103	1	9986	9986		73.133	31.348	1	31570			4534	2933	2674	2714	3561	3561					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2896824102502	2	518.289682	1034.56481	1.0937	0.00056683	-6.9875	-0.0036216	-5.8939	-0.0030547	518.2854912478671	34.275	0.16878	34.274	34.177	34.346	-0.0012474	1260	67	0.8615505	0.040543437	0.8600311	349.6807	0	16.455505						151	8	2	NaN	NaN	NaN	0.45297	1	9772	9772		11.548	0	1	12438			4535	2933	2674	2714	3562	3562					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5720883539002	1	1035.57209	1034.56481	1.0775	0.0011159	-1.3231	-0.0013701	-0.24553	-0.00025426	1035.5719978052152	34.275	0.19286	34.274	34.177	34.37	-0.0012474	123	100	1.5458313	0.058425188	1.5443119	313.7101	0	11.856781						270	9	3	NaN	NaN	NaN	0.023828	1	9775	9775		67.154	20.018	1	33990			4536	2933	2674	2714	3563	3563					0.048912073832070746
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7982059341001	2	557.798206	1113.58186	1.5468	0.00086281	-2.8211	-0.0015736	-1.2743	-0.00071078	557.7967679806003	15.918	0.16788	15.918	15.87	16.038	0	1215	40	0.8891654	0.023912191	0.8891654	360.55234	0	9.696289						168	8	3	NaN	NaN	NaN	0.032021	1	13431	13431		48.002	26.167	1	23373			4537	618	2675	2715	3564	3564					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.20122944493335	3	372.201229	1113.58186	1.6386	0.00060987	-2.4684	-0.00091873	-0.8298	-0.00030885	372.20042990708373	15.894	0.11986	15.894	15.894	16.014	0	1467	37	0.7339432	0.022273242	0.7339432	446.4108	0	13.547394						108	6	3	NaN	NaN	NaN	0.19455	1	13433	13433		25.681	14.511	1	9278.3			4538	618	2675	2715	3565	3565					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7982059341001	2	557.798206	1113.58186	2.055	0.0011463	-1.993	-0.0011117	0.061995	3.4581E-05	557.796881358687	15.987	0.21559	15.975	15.903	16.118	-0.012611	1215	43	0.8891654	0.025753021	0.88764596	360.55234	0	10.4427185						174	10	2	NaN	NaN	NaN	0.017735	1	13048	13048		83.529	51.076	1	26581			4539	618	2675	2715	3566	3566					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.20122944493335	3	372.201229	1113.58186	2.3735	0.00088343	-1.6069	-0.00059809	0.76664	0.00028534	372.200499637546	15.987	0.14372	15.975	15.927	16.07	-0.012611	1464	31	0.73579943	0.018561065	0.73428	447.5398	0	11.28949						94	7	2	NaN	NaN	NaN	0.14227	1	13049	13049		29.706	5.1442	1	9697.3			4540	618	2675	2715	3567	3567					0.029611279890104925
EYAWNREL	8	Unmodified	_EYAWNREL_					0	0	0			REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	REV__tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7590807736001	2	540.759081	1079.50361	1.4683	0.00079397	6.9762	0.0037724	8.4444	0.0045664	540.7631216367733	34.107	0.19304	34.107	34.059	34.252	0	1272	250	0.854179	0.15247321	0.854179	346.49915	0	61.850983						775	9	4	NaN	NaN	NaN	0.528	1	11950	11950		29.598	4.6373	1	218800	+		4541	13473	2676	2716	3568	3568					-0.032963045962333126
EYDAKSDMY	9	Unmodified	_EYDAKSDMY_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000490523.1_1_7:6064306-6068335:-|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.4455672113	1	1121.44557	1120.43829	1.9095	0.0021414	2.6893	0.0030158	4.5988	0.0051573	1121.4497751623396	28.918	0.096521	28.918	28.894	28.991	0	99	73	1.5599792	0.04240787	1.5599792	316.26187	0	8.597534						115	5	2	NaN	NaN	NaN	0.51576	1	13683	13683		8.962	1.3744	1	10237			4542	984	2677	2717	3569	3569					-0.11711086904256263
EYDDYMEMED	10	Unmodified	_EYDDYMEMED_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.2206761465501	2	670.220676	1338.4268	3.3757	0.0022625	1.7852	0.0011965	5.1609	0.0034589	670.7247357584461	8.3607	0.095846	8.3607	8.3128	8.4086	0	1338	34	0.81357855	0.02032113	0.81357855	329.22375	0	8.223145						20	5	2	NaN	NaN	NaN	0.78146	1	19378	19378		0.16111	0	1	1330.1	+		4543	9081	2678	2718	3570	3570					-0.2288769678054905
EYDLIVHQL	9	Unmodified	_EYDLIVHQL_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.2980387586001	2	565.298039	1128.58152	1.9429	0.0010983	-0.17554	-9.923E-05	1.7674	0.00099911	565.2973633670769	24.888	0.26547	24.888	24.767	25.033	0	1188	94	0.90571284	0.05701524	0.90571284	367.20255	0	23.115662						372	12	4	NaN	NaN	NaN	0.023828	1	14031	14031		67.154	30.568	1	79459			4544	2349	2679	2719	3571	3571					0.022377082691491523
EYDLIVHQL	9	Unmodified	_EYDLIVHQL_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2980387586001	2	565.298039	1128.58152	1.4199	0.00080267	2.4265	0.0013717	3.8464	0.0021744	565.8023398458419	24.888	0.28952	24.875	24.755	25.044	-0.012394	1191	97	0.90387505	0.05885768	0.9023556	366.45746	0	23.86261						434	13	4	NaN	NaN	NaN	0.011206	1	13589	13589		89.256	33.762	1	89633			4545	2349	2679	2719	3572	3572					0.022377082691491523
EYDLPALL	8	Unmodified	_EYDLPALL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4927754004001	1	933.492775	932.485499	1.538	0.0014357	1.9546	0.0018246	3.4927	0.0032604	933.4925558516669	32.37	0.048248	32.37	32.345	32.394	0	261	46	1.4642475	0.026661277	1.4642475	297.58115	0	5.4184265						60	3	2	NaN	NaN	NaN	0.82332	1	6664	6664		6.0903	0	1	3437			4546	2037	2680	2720	3573	3573					0.01655560429048819
EYDLPALL	8	Unmodified	_EYDLPALL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4927754004001	1	933.492775	932.485499	1.4533	0.0013567	-0.81642	-0.00076212	0.6369	0.00059454	933.4911394983952	32.344	0.096519	32.341	32.316	32.413	-0.0037613	243	64	1.4749115	0.03731799	1.473392	299.7484	0	7.584198						72	5	2	NaN	NaN	NaN	0.75682	1	6524	6524		15.013	0	1	4320.9			4547	2037	2680	2720	3574	3574					0.01655560429048819
EYDPVIILI	9	Unmodified	_EYDPVIILI_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.8077079879001	2	537.807708	1073.60086	1.6348	0.00087922	-1.469	-0.00079006	0.16579	8.9161E-05	537.8072492623967	36.326	0.048187	36.326	36.302	36.35	0	1263	46	0.85970795	0.027635753	0.85970795	348.76614	0	11.211243						58	3	2	NaN	NaN	NaN	0.20577	1	11729	11729		24.961	17.421	1	4181.8			4548	4889	2681	2721	3575	3575					0.06700664560048608
EYDQREWKSHL	11	Unmodified	_EYDQREWKSHL_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.8547720728001	2	745.854772	1489.69499	1.8975	0.0014152	-8.7668	-0.0065387	-6.8693	-0.0051235	745.850210087213	22.959	0.024113	22.959	22.959	22.983	0	984	34	1.03022	0.020066023	1.03022	416.4573	0	8.111542						59	2	3	NaN	NaN	NaN	0.7072	1	20545	20545		6.9844	1.2902	1	5854.4	+		4549	13134	2682	2722	3576	3576					-0.03026848355762013
EYDQREWKSHL	11	Unmodified						0	0	0			REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	745.854772	1489.69499	1.8975	0.0014152	-8.7668	-0.0065387	-6.8693	-0.0051235	745.850210087213	22.959	0.024113	22.959	22.959	22.983	0	984	34	1.03022	0.020066023	1.03022	416.4573		8.111542	-0.077283	0.0017967	-0.0010644	NaN	6.9844	59	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5854.4	+		4550	13134	2682	2722							-0.03026848355762013
EYDQREWKSHL	11	Unmodified						0	0	0			REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	745.854772	1489.69499	2.0721	0.0015455	-10.595	-0.0079021	-8.5226	-0.0063566	745.8468020017813	23.127	0.07234	23.114	23.09	23.162	-0.013296	978	34	1.0338683	0.020063996	1.0323489	417.93207		8.110687	0.077283	-0.00092997	0.0010644	NaN	6.9844	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6566.6	+		4551	13134	2682	2722							-0.03026848355762013
EYDVDTDEESH	11	Unmodified	_EYDVDTDEESH_					0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.8371212238667	3	446.837121	1337.48953	1.7786	0.00079473	6.2297	0.0027836	8.0082	0.0035784	447.1738630720789	23.537	0.072369	23.524	23.476	23.548	-0.01305	1509	52	0.70793515	0.03161037	0.7064157	429.7107	0	19.187225						100	4	3	NaN	NaN	NaN	0.688	1	18496	18496		8.3538	5.0493	1	7132.4	+		4552	10600	2683	2723	3577	3577					-0.16571091396508564
EYDVDTDEESH	11	Unmodified						0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	446.837121	1337.48953	1.3211	0.00059031	7.0672	0.0031579	8.3883	0.0037482	447.1736417332666	23.489	0.07239	23.489	23.465	23.538	0	1506	58	0.70979416	0.035325408	0.70979416	430.8391		21.44223	-0.017393	0.00061252	0.0016892	NaN	8.3538	110	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8469.6	+		4553	10600	2683	2723							-0.16571091396508564
EYDVDTDEESH	11	Unmodified						0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	446.837121	1337.48953	1.7786	0.00079473	6.2297	0.0027836	8.0082	0.0035784	447.1738630720789	23.537	0.072369	23.524	23.476	23.548	-0.01305	1509	52	0.70793515	0.03161037	0.7064157	429.7107		19.187225	0.017393	-0.00051016	-0.0016892	NaN	8.3538	100	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7132.4	+		4554	10600	2683	2723							-0.16571091396508564
EYDYKPEF	8	Unmodified	_EYDYKPEF_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7400223532001	2	545.740022	1089.46549	1.0688	0.00058327	1.888	0.0010304	2.9568	0.0016137	545.7407331506014	32.803	0.1689	32.8	32.703	32.872	-0.0031052	1260	61	0.8615505	0.036857605	0.8600311	349.44916	0	14.949646						119	8	2	NaN	NaN	NaN	0.75347	1	12045	12045		10.605	0	1	13337			4555	4463	2684	2724	3578	3578					-0.07566235301555935
EYEITQSLVFL	11	Unmodified	_EYEITQSLVFL_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3504682596	2	671.350468	1340.68638	1.049	0.00070422	-10.523	-0.0070644	-9.4737	-0.0063602	671.3438395628175	34.564	0.16882	34.563	34.515	34.684	-0.00064468	1098	64	0.960755	0.038456857	0.9592356	388.77374	0	15.561737						274	8	4	NaN	NaN	NaN	0.4078	1	18554	18554		21.771	1.2577	1	33348			4556	955	2685	2725	3579	3579					0.029667849550378378
EYERFFALL	9	Unmodified	_EYERFFALL_					0	0	0		ENSG00000111644|ENST00000229243|ACRBP;ENST00000538524.1_1_12:6755846-6756568:-|nuORF	ENSG00000111644|ENST00000229243|ACRBP	ENSG00000111644|ENST00000229243|ACRBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3084064796501	2	594.308406	1186.60226	0.67436	0.00040078	-1.4702	-0.00087376	-0.79586	-0.00047298	594.3066583658298	30.897	0.096476	30.897	30.849	30.946	0	1155	76	0.92591566	0.045915484	0.92591566	375.17178	0	18.604523						181	5	3	NaN	NaN	NaN	0.12866	1	16058	16058		31.675	14.817	1	17815			4557	1822	2686	2726	3580	3580					0.01642298648812357
EYERFFALL	9	Unmodified						0	0	0		ENSG00000111644|ENST00000229243|ACRBP;ENST00000538524.1_1_12:6755846-6756568:-|nuORF	ENSG00000111644|ENST00000229243|ACRBP	ENSG00000111644|ENST00000229243|ACRBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.308406	1186.60226	1.2172	0.00072337	-5.486	-0.0032604	-4.2688	-0.002537	594.3048943995243	31.162	0.072372	31.157	31.133	31.205	-0.0050716	1182	49	0.9093879	0.029393852	0.90786844	368.4749		11.910095	0.12968	-0.0028057	-0.0090236	NaN	31.675	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4153			4558	1822	2686	2726							0.01642298648812357
EYESNVEFEFK	11	Unmodified	_EYESNVEFEFK_					0	0	0			REV__tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1	REV__tr|U7SL62|U7SL62_FUSNUPseudouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01994PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.8169895829999	2	710.81699	1419.61943	0.87038	0.00061868	-7.185	-0.0051072	-6.3146	-0.0044885	711.3146851293862	28.725	0.16889	28.716	28.596	28.765	-0.0083504	1068	55	0.97906286	0.032932818	0.9775434	395.95724	0	13.318848						153	8	3	NaN	NaN	NaN	0.63477	1	19252	19252		11.739	1.3787	1	21486	+		4559	13419	2687	2727	3581	3581					-0.07359870326740747
EYFESPFTI	9	Unmodified	_EYFESPFTI_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.5197184324	1	1132.51972	1131.51244	1.9661	0.0022267	0.91399	0.0010351	2.8801	0.0032618	1132.5198153106032	32.032	0.24135	32.032	31.959	32.201	0	60	100	1.582944	0.05829537	1.582944	320.8794	0	11.817078						572	11	4	NaN	NaN	NaN	6.3027E-18	1	14129	14129		158.11	84.981	1	98317			4560	5842	2688	2728	3582	3582					-0.048053757504249006
EYFESPFTI	9	Unmodified	_EYFESPFTI_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.5197184324	1	1132.51972	1131.51244	0.61555	0.00069713	0.83665	0.00094753	1.4522	0.0016447	1132.5204644029627	32.007	0.19306	32.003	31.954	32.148	-0.0037575	60	109	1.582944	0.06360507	1.5814246	320.8794	0	12.893402						526	9	4	NaN	NaN	NaN	5.3062E-26	1	13675	13675		173.48	90.52	1	96572			4561	5842	2688	2728	3583	3583					-0.048053757504249006
EYFKKRDMWEE	11	Unmodified	_EYFKKRDMWEE_					0	0	0			REV__ENSG00000234828|ENST00000636793|IQCM	REV__ENSG00000234828|ENST00000636793|IQCM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.8612085089002	2	780.861209	1559.70786	1.315	0.0010269	-3.9787	-0.0031068	-2.6637	-0.00208	780.8580627187259	32.682	0.12067	32.679	32.655	32.776	-0.0031052	966	43	1.0411623	0.02552092	1.0396428	420.70667	0	10.312317						110	6	2	NaN	NaN	NaN	0.69801	1	19688	19688		7.5876	0	1	9566.7	+		4562	11323	2689	2729	3584	3584					-0.04960153287856883
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2530999387001	2	541.2531	1080.49165	1.7608	0.00095302	2.8187	0.0015256	4.5794	0.0024786	541.7564044848791	25.057	0.14477	25.057	25.009	25.153	0	1230	85	0.8799654	0.05155611	0.8799654	356.95532	0	20.913574						405	7	4	NaN	NaN	NaN	0.47456	1	11992	11992		32.453	15.594	1	56902			4563	3743	2690	2730	3585	3585					-0.045379213394198814
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2530999387001	2	541.2531	1080.49165	1.5646	0.00084686	2.0696	0.0011202	3.6342	0.001967	541.7563702986477	25.057	0.14472	25.045	24.996	25.141	-0.012011	1233	88	0.87812483	0.053400338	0.8766054	356.2087	0	21.661652						347	7	3	NaN	NaN	NaN	0.23186	1	11678	11678		47.482	16.871	1	56719			4564	3743	2690	2730	3586	3586					-0.045379213394198814
EYFKSFNF	8	Unmodified						0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.2531	1080.49165	2.8932	0.001566	3.6357	0.0019678	6.5289	0.0035338	541.7553578732051	25.419	0.048239	25.407	25.358	25.407	-0.012011	1221	31	0.885486	0.018399	0.88396657	359.19473		7.4634705	0.17481	0.00063374	0.0020006	NaN	32.453	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2275.2			4565	3743	2690	2730							-0.045379213394198814
EYFRVPDSATF	11	Unmodified	_EYFRVPDSATF_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.31695979325	2	666.31696	1330.61937	1.6702	0.0011129	-2.6608	-0.0017729	-0.99063	-0.00066008	666.816309906293	24.985	0.072403	24.985	24.96	25.033	0	1107	112	0.9552588	0.06775743	0.9552588	386.57947	0	27.42044						196	4	2	NaN	NaN	NaN	0.29849	1	19260	19260		25.681	16.762	1	25529			4566	2771	2691	2731	3587	3587					-0.03271825536057804
EYFRVPDSATF	11	Unmodified	_EYFRVPDSATF_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.31695979325	2	666.31696	1330.61937	1.7151	0.0011428	-1.2156	-0.00080995	0.49959	0.00033288	666.3163436576488	24.984	0.072378	24.972	24.948	25.02	-0.012392	1113	112	0.9515937	0.067742765	0.95007426	385.09625	0	27.41452						161	4	2	NaN	NaN	NaN	0.46872	1	18401	18401		19.592	6.589	1	22104			4567	2771	2691	2731	3588	3588					-0.03271825536057804
EYFRWPMLL	9	Unmodified	_EYFRWPMLL_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8206267854001	2	627.820627	1253.6267	0.56109	0.00035227	-3.3594	-0.0021091	-2.7983	-0.0017569	627.8190640529891	33.213	0.16892	33.21	33.21	33.379	-0.0024757	1134	64	0.9387595	0.03851497	0.93724006	380.14218	0	15.596283						171	8	2	NaN	NaN	NaN	0.18779	1	17105	17105		26.115	17.87	1	18404			4568	3064	2692	2732	3589	3589					0.01003235530697566
EYFYDNGEQSC	11	Unmodified	_EYFYDNGEQSC_					0	0	0			REV__nc|ENSG00000180113|O60522-2|TDRD6	REV__nc|ENSG00000180113|O60522-2|TDRD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.7482497033001	2	677.74825	1353.48195	1.5758	0.001068	8.2461	0.0055888	9.8218	0.0066567	678.2547389559799	20.069	0.19221	20.069	19.997	20.189	0	1137	76	0.9369253	0.045846224	0.9369253	379.09427	0	18.55008						343	9	4	NaN	NaN	NaN	0.65577	1	19583	19583		10.36	2.1153	1	41911	+		4569	10822	2693	2733	3590	3590					-0.18065522197775863
EYFYDNGEQSC	11	Unmodified						0	0	0			REV__nc|ENSG00000180113|O60522-2|TDRD6	REV__nc|ENSG00000180113|O60522-2|TDRD6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	677.74825	1353.48195	1.5758	0.001068	8.2461	0.0055888	9.8218	0.0066567	678.2547389559799	20.069	0.19221	20.069	19.997	20.189	0	1137	76	0.9369253	0.045846224	0.9369253	379.09427		18.55008	-0.004701	-0.0003204	-0.0001574	NaN	10.36	343	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41911	+		4570	10822	2693	2733							-0.18065522197775863
EYFYDNGEQSC	11	Unmodified						0	0	0			REV__nc|ENSG00000180113|O60522-2|TDRD6	REV__nc|ENSG00000180113|O60522-2|TDRD6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.74825	1353.48195	1.2779	0.00086608	8.6852	0.0058864	9.9631	0.0067525	678.2551823135528	20.092	0.14438	20.078	20.03	20.174	-0.014141	1134	64	0.9387595	0.038506687	0.93724006	379.83643		15.580383	0.004701	0.00027487	0.0001574	NaN	10.36	220	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24023	+		4571	10822	2693	2733							-0.18065522197775863
EYGAADPG	8	Unmodified	_EYGAADPG_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	779.3206246942	1	779.320625	778.313348	2.0019	0.0015601	6.3205	0.0049257	8.3224	0.0064858	779.3251439852979	23.465	0.072365	23.465	23.393	23.465	0	540	73	1.2980826	0.043117046	1.2980826	264.57037	0	8.787964						128	4	2	NaN	NaN	NaN	0.72043	1	4470	4470		17.78	5.1924	1	11317			4572	2628	2694	2734	3591	3591					-0.08467591258477114
EYGENFPML	9	Unmodified	_EYGENFPML_					0	0	0		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.4764734092	1	1099.47647	1098.4692	1.63	0.0017921	1.8257	0.0020073	3.4557	0.0037994	1099.4780176272177	29.546	0.19305	29.546	29.498	29.691	0	117	67	1.5493695	0.038915038	1.5493695	314.18735	0	7.8913574						299	9	3	NaN	NaN	NaN	0.030696	1	12770	12770		58.2	28.601	1	32020			4573	5744	2695	2735	3592	3592					-0.07609888799356668
EYGENFPML	9	Unmodified	_EYGENFPML_					0	0	0		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.4764734092	1	1099.47647	1098.4692	1.5652	0.0017208	2.6324	0.0028942	4.1975	0.0046151	1099.4787838682994	29.545	0.21714	29.538	29.49	29.707	-0.0070648	114	64	1.5511382	0.037144184	1.5496187	314.54602	0	7.532257						279	10	4	NaN	NaN	NaN	0.011693	1	12438	12438		87.778	51.192	1	27705			4574	5744	2695	2735	3593	3593					-0.07609888799356668
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(50)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1115.4713880313	1	1115.47139	1114.46411	1.2396	0.0013827	0.79813	0.00089029	2.0377	0.002273	1116.4749307895163	26.553	0.19303	26.542	26.446	26.639	-0.010645	120	76	1.5476005	0.044223905	1.5460811	313.77274	0	8.966309						272	9	3	NaN	NaN	NaN	0.042816	1	13065	13065		49.961	30.843	1	24145			4575	5744	2695	2736	3594	3594		586			-0.08854192661965499
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.263664625	2	529.263665	1056.51278	1.5156	0.00080213	0.24215	0.00012816	1.7577	0.00093029	529.2640718999555	27.615	0.12063	27.615	27.567	27.688	0	1260	52	0.8615505	0.031327307	0.8615505	349.58524	0	12.711456						143	6	3	NaN	NaN	NaN	0.31737	1	10937	10937		17.799	5.2111	1	21156			4576	617	2696	2737	3595	3595					-0.013219560305742561
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.263664625	2	529.263665	1056.51278	0.72351	0.00038293	-0.77004	-0.00040755	-0.046526	-2.4625E-05	529.2633036762923	27.615	0.096521	27.605	27.557	27.653	-0.009552	1257	64	0.86339295	0.038698435	0.8618735	350.33282	0	15.702393						131	5	2	NaN	NaN	NaN	0.10956	1	10710	10710		34.439	15.32	1	23477			4577	617	2696	2737	3596	3596					-0.013219560305742561
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.7534640794499	2	612.753464	1223.49238	1.3722	0.0008408	0.9131	0.0005595	2.2853	0.0014003	612.7540224021169	28.243	0.2654	28.243	28.17	28.436	0	1167	76	0.91857195	0.04592544	0.91857195	372.06717	0	18.602081						361	12	2	NaN	NaN	NaN	0.23112	1	17053	17053		23.334	10.765	1	84550			4578	3415	2697	2738	3597	3597					-0.1104312669040155
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.7534640794499	2	612.753464	1223.49238	0.73343	0.00044941	1.0316	0.00063213	1.765	0.0010815	612.7541529433154	28.242	0.24138	28.233	28.185	28.426	-0.0089779	1167	91	0.91857195	0.055089712	0.9170525	372.06717	0	22.314087						329	11	2	NaN	NaN	NaN	0.20577	1	16359	16359		24.961	8.5444	1	81856			4579	3415	2697	2738	3598	3598					-0.1104312669040155
EYGIFNQKI	9	Unmodified	_EYGIFNQKI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2927564154501	2	556.292756	1110.57096	2.002	0.0011137	-1.102	-0.00061302	0.90001	0.00050067	556.2919525067442	23.055	0.26508	23.055	23.031	23.296	0	1215	100	0.8891654	0.060719907	0.8891654	360.5643	0	24.622437						327	12	2	NaN	NaN	NaN	0.025843	1	13307	13307		64.55	34.952	1	130120			4580	1254	2698	2739	3599	3599					0.02009725614720992
EYGIFNQKI	9	Unmodified	_EYGIFNQKI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2927564154501	2	556.292756	1110.57096	1.7924	0.00099708	-1.9397	-0.001079	-0.14731	-8.1945E-05	556.2914957453061	23.103	0.26517	23.09	22.993	23.258	-0.013294	1212	106	0.8910048	0.064413846	0.88948536	361.31018	0	26.120361						348	12	3	NaN	NaN	NaN	0.036546	1	12928	12928		52.624	34.825	1	122790			4581	1254	2698	2739	3600	3600					0.02009725614720992
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2922250992001	2	552.292225	1102.5699	1.4805	0.00081766	-0.70887	-0.0003915	0.77161	0.00042615	552.2915957002597	27.446	0.26547	27.446	27.422	27.688	0	1197	91	0.9001988	0.05518502	0.9001988	365.0709	0	22.379974						486	12	5	NaN	NaN	NaN	0.028569	1	12949	12949		60.984	0	1	243480			4582	43	2699	2740	3601	3601					0.02271511245817237
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2922250992001	2	552.292225	1102.5699	1.4299	0.00078974	-0.35438	-0.00019572	1.0755	0.00059401	552.2918931780207	27.494	0.19306	27.484	27.436	27.629	-0.009552	1197	82	0.9001988	0.049658418	0.8986794	365.0709	0	20.138733						431	9	5	NaN	NaN	NaN	0.019939	1	12612	12612		72.076	0	1	238970			4583	43	2699	2740	3602	3602					0.02271511245817237
EYGNIIVTL	9	Unmodified	_EYGNIIVTL_					0	0	0		ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.L1089Wfs*4|1|0.19|ENSG00000144724|chr3:62273027-62273027|C/-|frameshift_variant	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5564382897002	1	1021.55644	1020.54916	2.5601	0.0026153	-1.7176	-0.0017546	0.84247	0.00086064	1021.5546331269506	29.811	0.14483	29.811	29.763	29.908	0	210	94	1.4944444	0.05498326	1.4944444	303.3365	0	11.160309						251	7	3	NaN	NaN	NaN	0.070055	1	9394	9394		40.154	6.7285	1	41429			4584	3490	2700	2741	3603	3603					0.03970920866152028
EYGNIIVTL	9	Unmodified	_EYGNIIVTL_					0	0	0		ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.L1089Wfs*4|1|0.19|ENSG00000144724|chr3:62273027-62273027|C/-|frameshift_variant	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5564382897002	1	1021.55644	1020.54916	1.3992	0.0014294	-2.3148	-0.0023647	-0.91562	-0.00093536	1021.5549072670013	29.811	0.16888	29.803	29.755	29.924	-0.0070648	210	100	1.4944444	0.05851817	1.4929249	303.3365	0	11.877808						314	8	4	NaN	NaN	NaN	0.030669	1	9206	9206		58.235	10.754	1	46657			4585	3490	2700	2741	3604	3604					0.03970920866152028
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2978417933501	2	564.297842	1126.58113	1.7099	0.00096491	-7.4581	-0.0042086	-5.7481	-0.0032437	564.2953729629688	29.57	0.048286	29.57	29.57	29.618	0	1242	64	0.87260187	0.038639963	0.87260187	353.786	0	15.666077						74	3	2	NaN	NaN	NaN	0.31766	1	13967	13967		17.78	3.7387	1	9375.1			4586	4155	2701	2742	3605	3605					0.022903333399654002
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2978417933501	2	564.297842	1126.58113	1.9245	0.001086	-2.0386	-0.0011504	-0.11417	-6.4425E-05	564.2966870116588	29.401	0.24135	29.401	29.305	29.546	0	1239	73	0.87444305	0.04417187	0.87444305	354.53247	0	17.908936						291	11	2	NaN	NaN	NaN	0.0009575	1	13970	13970		114.16	35.763	1	193220			4587	4155	2701	2742	3606	3606					0.022903333399654002
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.2978417933501	2	564.297842	1126.58113	1.3788	0.00077804	-1.6053	-0.00090585	-0.2265	-0.00012782	564.2968939568256	29.4	0.21716	29.393	29.32	29.537	-0.0077209	1239	76	0.87444305	0.0460099	0.8729236	354.53247	0	18.654144						287	10	2	NaN	NaN	NaN	0.013926	1	13524	13524		81.001	12.893	1	192550			4588	4155	2701	2742	3607	3607					0.022903333399654002
EYGPVYSTW	9	Unmodified	_EYGPVYSTW_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.4887526549999	1	1101.48875	1100.48148	2.1552	0.0023739	-0.6317	-0.00069581	1.5235	0.0016781	1101.4877574347468	26.022	0.21723	26.022	25.974	26.191	0	135	103	1.5387528	0.060166955	1.5387528	312.0274	0	12.200623						284	10	2	NaN	NaN	NaN	0.023828	1	12847	12847		67.154	25.37	1	35358			4589	3619	2702	2743	3608	3608					-0.06474529064666967
EYGPVYSTW	9	Unmodified	_EYGPVYSTW_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.4887526549999	1	1101.48875	1100.48148	2.4436	0.0026916	-0.73754	-0.00081239	1.7061	0.0018792	1101.4880654844542	26.022	0.21724	26.011	25.962	26.18	-0.011135	132	97	1.5405227	0.05662763	1.5390033	312.38632	0	11.482941						312	10	2	NaN	NaN	NaN	0.028349	1	12517	12517		61.271	25.975	1	37217			4590	3619	2702	2743	3609	3609					-0.06474529064666967
EYGRILTRL	9	Unmodified	_EYGRILTRL_					0	0	0		nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.22062397189995	3	374.220624	1119.64004	1.7391	0.00065079	-2.1263	-0.0007957	-0.38724	-0.00014491	374.2192646479616	19.492	0.11996	19.492	19.444	19.564	0	1413	28	0.7673241	0.016675055	0.7673241	466.68344	0	10.141693						59	6	2	NaN	NaN	NaN	0.2345	1	13672	13672		16.226	2.2771	1	4214.7			4591	2550	2703	2744	3610	3610					0.08500809634256257
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5193245019	1	1046.51932	1045.51205	1.7675	0.0018497	-0.0046358	-4.8515E-06	1.7629	0.0018449	1046.519122276912	35.795	0.24097	35.795	35.747	35.988	0	159	97	1.5245869	0.056711793	1.5245869	309.35617	0	11.507477						550	11	4	NaN	NaN	NaN	0.0081087	1	10442	10442		96.245	51.607	1	143420			4592	7939	2704	2745	3611	3611					-0.008887506796099842
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5193245019	1	1046.51932	1045.51205	1.3349	0.001397	0.61605	0.00064471	1.951	0.0020417	1046.5193315971674	35.794	0.31335	35.794	35.722	36.036	0.00052643	159	121	1.5245869	0.07082963	1.5230675	309.35617	0	14.372162						624	14	4	NaN	NaN	NaN	0.002833	1	10232	10232		108.51	67.049	1	149780			4593	7939	2704	2745	3612	3612					-0.008887506796099842
EYGVHWNFF	9	Unmodified	_EYGVHWNFF_					0	0	0		PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant;ENSG00000277161|ENST00000614443|PIGW	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.76944849465	2	599.769448	1197.52434	1.1552	0.00069288	-3.848	-0.0023079	-2.6927	-0.001615	599.7675603021974	29.232	0.12068	29.232	29.136	29.256	0	1176	67	0.9130621	0.04042524	0.9130621	369.92487	0	16.378204						223	6	3	NaN	NaN	NaN	0.10956	1	16379	16379		34.439	12.312	1	36156			4594	6195	2705	2746	3613	3613					-0.06651714216604887
EYHAWHHP	8	Unmodified	_EYHAWHHP_					0	0	0			REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.4696889679	1	1076.46969	1075.46241	1.0238	0.0011021	8.0135	0.0086262	9.0373	0.0097283	1076.4786949487245	32.973	0.1207	32.973	32.925	33.045	0	105	46	1.5564433	0.026520252	1.5564433	315.7056	0	5.3793335						105	6	2	NaN	NaN	NaN	0.76633	1	11773	11773		13.737	0.73422	1	8720.2	+		4595	13269	2706	2747	3614	3614					-0.07230020845031504
EYHAWHHP	8	Unmodified						0	0	0			REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1076.46969	1075.46241	1.0238	0.0011021	8.0135	0.0086262	9.0373	0.0097283	1076.4786949487245	32.973	0.1207	32.973	32.925	33.045	0	105	46	1.5564433	0.026520252	1.5564433	315.7056		5.3793335	0.0017896	0.0003995	-0.0010082	NaN	13.737	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8720.2	+		4596	13269	2706	2747							-0.07230020845031504
EYHAWHHP	8	Unmodified						0	0	0			REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	REV__NFATC2|p.R421W|1|0.07|ENSG00000101096|chr20:51516855-51516855|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1076.46969	1075.46241	1.5289	0.0016458	7.26	0.0078152	8.7889	0.009461	1076.4777151665965	32.972	0.096504	32.969	32.897	32.993	-0.0024757	99	58	1.5599792	0.033592463	1.5584598	316.42282		6.813843	-0.0017896	-0.00041156	0.0010082	NaN	13.737	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7304.1	+		4597	13269	2706	2747							-0.07230020845031504
EYHPASGA	8	Unmodified	_EYHPASGA_					0	0	0			REV__ENST00000585735.1_1_17:40342028-40342334:-|nuORF	REV__ENST00000585735.1_1_17:40342028-40342334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.3631582109001	1	831.363158	830.355882	1.0276	0.00085432	-4.2268	-0.003514	-3.1992	-0.0026597	831.359831917122	29.014	0.16891	29.007	28.982	29.151	-0.0077209	414	61	1.3733286	0.03575504	1.3718091	279.60263	0	7.279541						228	8	3	NaN	NaN	NaN	0.82797	1	5019	5019		5.4659	0.55612	1	22333	+		4598	10487	2707	2748	3615	3615					-0.06608196130230226
EYIAYITI	8	Unmodified	_EYIAYITI_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5240755287999	1	985.524076	984.516799	2.1961	0.0021643	-1.5147	-0.0014928	0.68136	0.0006715	985.520829783149	22.019	0.072279	22.019	21.994	22.067	0	276	37	1.4553556	0.021348357	1.4553556	295.54648	0	4.335327						68	4	2	NaN	NaN	NaN	0.82797	1	8035	8035		5.4659	1.0528	1	4162.8	+		4599	13539	2708	2749	3616	3616					0.02392133463126811
EYIAYITI	8	Unmodified						0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	985.524076	984.516799	2.1961	0.0021643	-1.5147	-0.0014928	0.68136	0.0006715	985.520829783149	22.019	0.072279	22.019	21.994	22.067	0	276	37	1.4553556	0.021348357	1.4553556	295.54648		4.335327	0.0070688	0.0015704	0.0016492	NaN	5.4659	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4162.8	+		4600	13539	2708	2749							0.02392133463126811
EYIAYITI	8	Unmodified						0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	985.524076	984.516799	2.1473	0.0021162	-5.2591	-0.005183	-3.1118	-0.0030667	985.517233288452	22.018	0.048082	22.004	21.98	22.028	-0.013895	279	40	1.4535767	0.023123741	1.4520572	295.18524		4.6958313	-0.0070688	-0.0021198	-0.0016492	NaN	5.4659	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3757	+		4601	13539	2708	2749							0.02392133463126811
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.8054996499501	2	536.8055	1071.59645	1.866	0.0010017	-2.166	-0.0011627	-0.30001	-0.00016105	536.8040887751035	27.76	0.096495	27.76	27.736	27.833	0	1188	67	0.90571284	0.040447116	0.90571284	367.4381	0	16.408997						173	5	3	NaN	NaN	NaN	0.049695	1	11638	11638		47.04	11.744	1	46361			4602	2715	2709	2750	3617	3617					0.06351200137146407
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.8054996499501	2	536.8055	1071.59645	0.86822	0.00046607	-1.9029	-0.0010215	-1.0347	-0.00055543	536.8042690476266	27.783	0.24136	27.774	27.702	27.943	-0.009552	1188	109	0.90571284	0.066229165	0.9041934	367.4381	0	26.86847						260	11	3	NaN	NaN	NaN	0.030391	1	11335	11335		58.599	23.303	1	54632			4603	2715	2709	2750	3618	3618					0.06351200137146407
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.79258923995	2	605.792589	1209.57063	1.2407	0.0007516	-2.1373	-0.0012947	-0.8966	-0.00054315	605.7921417022247	27.036	0.19304	27.036	26.964	27.157	0	1119	118	0.9479278	0.07152015	0.9479278	384.00705	0	28.97293						405	9	2	NaN	NaN	NaN	0.024986	1	16718	16718		65.672	30.376	1	105000			4604	1897	2710	2751	3619	3619					-0.02577694105161754
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.79258923995	2	605.792589	1209.57063	0.89019	0.00053927	-3.4577	-0.0020947	-2.5675	-0.0015554	605.7923175016114	27.06	0.24136	27.049	26.953	27.194	-0.010126	1122	124	0.9460945	0.07519597	0.9445751	383.2644	0	30.462006						666	11	4	NaN	NaN	NaN	0.078597	1	16042	16042		38.918	15.832	1	115520			4605	1897	2710	2751	3620	3620					-0.02577694105161754
EYIKFLDLF	9	Unmodified	_EYIKFLDLF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.32098253865	2	594.320983	1186.62741	0.62278	0.00037013	-2.7841	-0.0016546	-2.1613	-0.0012845	594.3187555135082	33.745	0.14478	33.745	33.697	33.842	0	1113	100	0.9515937	0.06052351	0.9515937	385.57617	0	24.52356						319	7	4	NaN	NaN	NaN	0.01966	1	16060	16060		72.428	42.83	1	57769			4606	5717	2711	2752	3621	3621					0.041563534513670675
EYIKFLDLF	9	Unmodified	_EYIKFLDLF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.32098253865	2	594.320983	1186.62741	0.42134	0.00025041	-1.7688	-0.0010512	-1.3475	-0.00080083	594.3195758725335	33.792	0.21722	33.79	33.742	33.959	-0.0018501	1110	82	0.95342636	0.049513936	0.9519069	386.31876	0	20.062561						301	10	4	NaN	NaN	NaN	0.015447	1	15448	15448		77.761	36.804	1	56208			4607	5717	2711	2752	3622	3622					0.041563534513670675
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.2290080112333	3	390.229008	1167.66519	1.8431	0.00071921	-2.8391	-0.0011079	-0.99605	-0.00038869	390.22753882266335	23.248	0.19287	23.248	23.224	23.417	0	1443	61	0.7487872	0.037101984	0.7487872	455.18192	0	22.553986						247	9	4	NaN	NaN	NaN	0.2345	1	15413	15413		16.226	0	1	60319			4608	5644	2712	2753	3623	3623					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.83987378355	2	584.839874	1167.66519	2.453	0.0014346	-2.6702	-0.0015617	-0.21722	-0.00012704	584.8381802343124	23.248	0.24117	23.248	23.2	23.441	0	1176	64	0.9130621	0.03856486	0.9130621	370.03262	0	15.628998						363	11	5	NaN	NaN	NaN	0.17328	1	15415	15415		27.046	6.491	1	101140			4609	5644	2712	2753	3624	3624					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.2290080112333	3	390.229008	1167.66519	1.854	0.00072348	-3.0919	-0.0012065	-1.2379	-0.00048306	390.22758462967795	23.392	0.2413	23.379	23.307	23.548	-0.013296	1443	58	0.7487872	0.035248756	0.7472678	455.18192	0	21.42746						209	11	2	NaN	NaN	NaN	0.084037	1	14879	14879		33.907	22.346	1	52734			4610	5644	2712	2753	3625	3625					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.83987378355	2	584.839874	1167.66519	2.0139	0.0011778	-1.7027	-0.00099581	0.31121	0.00018201	584.8383129563628	23.416	0.28952	23.403	23.283	23.572	-0.013294	1176	67	0.9130621	0.040394723	0.91154265	370.0326	0	16.370605						434	13	4	NaN	NaN	NaN	0.017791	1	14880	14880		74.794	44.184	1	90630			4611	5644	2712	2753	3626	3626					0.08806864436837714
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5826530401998	1	1077.58265	1076.57538	1.091	0.0011757	-1.6277	-0.0017539	-0.53661	-0.00057824	1077.5820506769123	32.152	0.072407	32.152	32.128	32.201	0	60	49	1.582944	0.028247952	1.582944	321.07678	0	5.729706						86	4	2	NaN	NaN	NaN	0.51576	1	11835	11835		8.962	1.4216	1	7950.4			4612	3816	2713	2754	3627	3627					0.040151900376031335
EYILFLFPR	9	Unmodified	_EYILFLFPR_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3369669538499	2	599.336967	1196.65938	0.55388	0.00033196	-1.2106	-0.00072557	-0.65674	-0.00039361	599.3367432612469	33.383	0.09655	33.383	33.383	33.48	0	1155	40	0.92591566	0.023863196	0.92591566	375.13556	0	9.668182						125	5	2	NaN	NaN	NaN	0.25448	1	16365	16365		21.835	0	1	16919	+	+	4613	8779	2714	2755	3628	3628					0.06891765925161053
EYILVPSTF	9	Unmodified	_EYILVPSTF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5611893166	1	1068.56119	1067.55391	1.12	0.0011968	-1.4876	-0.0015896	-0.36762	-0.00039283	1068.559796079204	31.091	0.12067	31.091	31.042	31.163	0	99	85	1.5599792	0.049502015	1.5599792	316.45255	0	10.041809						253	6	3	NaN	NaN	NaN	0.13602	1	11448	11448		30.61	8.4838	1	25756			4614	4189	2715	2756	3629	3629					0.02283805008892159
EYIPDLYNHF	10	Unmodified	_EYIPDLYNHF_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.8062279314499	2	655.806228	1309.5979	1.7888	0.0011731	-1.3067	-0.00085696	0.48205	0.00031613	655.8050856316208	26.119	0.16894	26.119	26.07	26.239	0	1113	73	0.9515937	0.043981552	0.9515937	385.1598	0	17.801605						281	8	3	NaN	NaN	NaN	0.27719	1	18927	18927		28.896	16.847	1	39602			4615	409	2716	2757	3630	3630					-0.04451210564775465
EYIPDLYNHF	10	Unmodified	_EYIPDLYNHF_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8062279314499	2	655.806228	1309.5979	1.6064	0.0010535	-1.563	-0.001025	0.043469	2.8507E-05	655.805219112228	26.143	0.24138	26.131	25.987	26.228	-0.011137	1110	82	0.95342636	0.049476504	0.9519069	385.90155	0	20.025726						362	11	4	NaN	NaN	NaN	0.068403	1	18093	18093		50.315	25.753	1	42465			4616	409	2716	2757	3631	3631					-0.04451210564775465
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.3058637907	2	620.305864	1238.59717	1.3027	0.00080807	-1.8477	-0.0011462	-0.54503	-0.00033809	620.3046705618013	24.743	0.16891	24.743	24.695	24.864	0	1191	91	0.90387505	0.055089712	0.90387505	366.0644	0	22.311035						357	8	4	NaN	NaN	NaN	0.041983	1	17493	17493		50.315	21.42	1	66637			4617	1957	2717	2758	3632	3632					-0.012580052138218889
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.3058637907	2	620.305864	1238.59717	0.86121	0.00053422	-2.8656	-0.0017775	-2.0044	-0.0012433	620.3043277217597	24.743	0.16887	24.731	24.707	24.875	-0.012394	1191	94	0.90387505	0.056922972	0.9023556	366.0644	0	23.053497						369	8	4	NaN	NaN	NaN	0.2961	1	16756	16756		19.164	0	1	69444			4618	1957	2717	2758	3633	3633					-0.012580052138218889
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3157001955001	2	561.3157	1120.61685	2.0651	0.0011592	-1.6766	-0.00094111	0.38848	0.00021806	561.3149492594375	36.374	0.28939	36.374	36.302	36.591	0	1200	76	0.89836043	0.045965135	0.89836043	364.2529	0	18.637238						685	13	6	NaN	NaN	NaN	0.050761	1	13714	13714		60.982	28.529	1	741900			4619	5153	2718	2759	3634	3634					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.6241239244	1	1121.62412	1120.61685	1.9426	0.0021789	-0.53284	-0.00059764	1.4098	0.0015812	1121.6228476913411	36.374	0.14463	36.374	36.302	36.446	0	57	127	1.5847093	0.07422948	1.5847093	321.27487	0	15.048859						331	7	4	NaN	NaN	NaN	0.030261	1	13716	13716		75.698	46.1	1	45404			4620	5153	2718	2759	3635	3635					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.6241239244	1	1121.62412	1120.61685	1.8404	0.0020642	-0.39517	-0.00044323	1.4452	0.001621	1121.6235908870133	36.374	0.048206	36.374	36.35	36.398	0	651	118	1.2315145	0.07020402	1.2315145	249.6702	0	14.232742						142	3	3	NaN	NaN	NaN	0.10206	1	13717	13717		47.482	25.647	1	10247			4621	5153	2718	2759	3636	3636					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.3157001955001	2	561.3157	1120.61685	2.208	0.0012394	-0.86041	-0.00048296	1.3475	0.0007564	561.3152898944053	36.372	0.31317	36.374	36.302	36.615	0.0016747	1200	73	0.89836043	0.044119358	0.896841	364.2529	0	17.888824						696	14	6	NaN	NaN	NaN	0.10206	1	13311	13311		47.482	16.871	1	612180			4622	5153	2718	2759	3637	3637					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1121.6241239244	1	1121.62412	1120.61685	1.6598	0.0018617	0.2461	0.00027603	1.9059	0.0021377	1121.624505394692	36.348	0.096291	36.35	36.326	36.422	0.0016747	57	154	1.5847093	0.09016931	1.5831898	321.27487	0	18.280396						290	5	3	NaN	NaN	NaN	0.026267	1	13312	13312		81.699	37.061	1	44386			4623	5153	2718	2759	3638	3638					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1121.6241239244	1	1121.62412	1120.61685	1.7237	0.0019333	0.64474	0.00072315	2.3684	0.0026565	1121.6249910740275	36.372	0.048134	36.374	36.35	36.398	0.0016747	651	121	1.2315145	0.072000265	1.229995	249.6702	0	14.596909						166	3	3	NaN	NaN	NaN	0.090258	1	13313	13313		49.961	20.363	1	10757			4624	5153	2718	2759	3639	3639					0.06136370796957635
EYIQKNVQL	9	Unmodified	_EYIQKNVQL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.8113133093501	2	567.811313	1133.60807	1.6631	0.00094433	-2.2476	-0.0012762	-0.58453	-0.0003319	567.8097338883431	18.65	0.11992	18.636	18.612	18.731	-0.014061	1224	49	0.883646	0.029435158	0.88212657	358.23685	0	11.933258						105	6	2	NaN	NaN	NaN	0.030669	1	13775	13775		58.235	7.4047	1	15921			4625	2492	2719	2760	3640	3640					0.04661397160475644
EYIQKNVQL	9	Unmodified						0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.811313	1133.60807	2.4014	0.0013635	-2.8065	-0.0015936	-0.40516	-0.00023005	567.8094662083425	18.628	0.16794	18.628	18.532	18.7	0	1218	55	0.8873258	0.033110976	0.8873258	359.72867		13.423462	-0.0036016	-0.00030852	0.0025996	NaN	58.235	140	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15615			4626	2492	2719	2760							0.04661397160475644
EYIQLLIA	8	Unmodified	_EYIQLLIA_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5557100082001	1	962.55571	961.548434	1.0177	0.00097962	-4.8512	-0.0046696	-3.8335	-0.00369	962.5506795844445	32.925	0.16893	32.925	32.78	32.949	0	249	70	1.4713576	0.040867686	1.4713576	298.8946	0	8.301971						147	8	2	NaN	NaN	NaN	0.81756	1	7378	7378		6.8632	1.9535	1	11927	+		4627	10827	2720	2761	3641	3641					0.06612126217089553
EYIRMVAEW	9	Unmodified	_EYIRMVAEW_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7920663112001	2	598.792066	1195.56958	1.7142	0.0010265	0.34411	0.00020605	2.0583	0.0012325	599.2931800752506	25.467	0.19297	25.467	25.419	25.612	0	1167	85	0.91857195	0.051422596	0.91857195	372.1641	0	20.834137						331	9	3	NaN	NaN	NaN	0.022185	1	16326	16326		69.233	41.937	1	44656			4628	887	2721	2762	3642	3642					-0.02038231745700614
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3011127638001	2	585.301113	1168.58767	2.1127	0.0012366	-7.2181	-0.0042247	-5.1053	-0.0029882	585.2962316795389	21.488	0.24104	21.488	21.464	21.705	0	1185	100	0.90755045	0.060687065	0.90755045	367.79556	0	24.594147						422	11	4	NaN	NaN	NaN	0.012018	1	15443	15443		86.792	43.798	1	153350			4629	3320	2722	2763	3643	3643					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.3011127638001	2	585.301113	1168.58767	1.78	0.0010418	-7.8647	-0.0046032	-6.0847	-0.0035614	585.2959603842721	21.489	0.28906	21.475	21.45	21.739	-0.014006	1185	76	0.90755045	0.04595518	0.906031	367.79556	0	18.623901						428	13	5	NaN	NaN	NaN	0.032689	1	14905	14905		55.592	20.295	1	150920			4630	3320	2722	2763	3644	3644					0.010122265006657472
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3187742007	2	539.318774	1076.623	1.9129	0.0010317	-0.93996	-0.00050694	0.97296	0.00052474	539.3181284170638	27.808	0.1689	27.808	27.736	27.905	0	1224	67	0.883646	0.040486515	0.883646	358.4646	0	16.42395						333	8	4	NaN	NaN	NaN	0.0034808	1	11846	11846		106.56	39.404	1	109220			4631	458	2723	2764	3645	3645					0.08774889028450161
EYISIALRI	9	Unmodified	_EYISIALRI_					0	0	0		nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3187742007	2	539.318774	1076.623	1.1209	0.00060454	-0.18996	-0.00010245	0.93098	0.00050209	539.3189555929923	27.832	0.21723	27.822	27.702	27.919	-0.009552	1224	79	0.883646	0.047842503	0.88212657	358.4646	0	19.40805						388	10	4	NaN	NaN	NaN	0.01452	1	11535	11535		79.199	20.963	1	105010			4632	458	2723	2764	3646	3646					0.08774889028450161
EYISKTYKI	9	Unmodified	_EYISKTYKI_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.8160643362501	2	572.816064	1143.61758	1.7825	0.0010211	-3.0122	-0.0017254	-1.2297	-0.00070437	572.8142149498897	16.59	0.14398	16.59	16.566	16.71	0	1209	34	0.892844	0.020229042	0.892844	361.92773	0	8.200134						134	7	3	NaN	NaN	NaN	0.19435	1	14593	14593		34.454	1.0287	1	13143			4633	2887	2724	2765	3647	3647					0.0515116544600005
EYISKTYKI	9	Unmodified	_EYISKTYKI_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8160643362501	2	572.816064	1143.61758	1.493	0.00085519	-1.1842	-0.00067832	0.30877	0.00017687	572.8149176470629	16.658	0.14382	16.645	16.597	16.741	-0.013294	1206	43	0.894683	0.025747418	0.89316356	362.6732	0	10.437103						137	7	3	NaN	NaN	NaN	0.15474	1	14114	14114		37.231	9.9346	1	13074			4634	2887	2724	2765	3648	3648					0.0515116544600005
EYIYDLFSVII	11	Unmodified	_EYIYDLFSVII_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8632114941	2	687.863211	1373.71187	1.8181	0.0012506	7.3507	0.0050563	9.1688	0.0063069	687.8670922542535	28.677	0.12062	28.677	28.653	28.774	0	1062	37	0.9827221	0.021952868	0.9827221	397.56516	0	8.881134						115	6	4	NaN	NaN	NaN	0.64343	1	19841	19841		11.17	3.4877	1	11112			4635	980	2725	2766	3649	3649					0.039962594774578974
EYKIAFPYL	9	Unmodified	_EYKIAFPYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3078751634001	2	572.307875	1142.6012	1.8303	0.0010475	-0.70349	-0.00040261	1.1268	0.00064488	572.3076400973522	29.377	0.26547	29.377	29.28	29.546	0	1200	88	0.89836043	0.05330801	0.89836043	364.16772	0	21.609436						524	12	4	NaN	NaN	NaN	0.024221	1	14553	14553		66.656	36.046	1	323280			4636	4933	2726	2767	3650	3650					0.0356008427991128
EYKIAFPYL	9	Unmodified	_EYKIAFPYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3078751634001	2	572.307875	1142.6012	1.3319	0.00076225	-0.35072	-0.00020072	0.98118	0.00056153	572.3079311256794	29.4	0.31365	29.393	29.248	29.562	-0.0077209	1197	85	0.9001988	0.05145037	0.8986794	364.91296	0	20.856415						646	14	5	NaN	NaN	NaN	0.01966	1	14074	14074		72.428	39.976	1	352460			4637	4933	2726	2767	3651	3651					0.0356008427991128
EYKLLHEYW	9	Unmodified	_EYKLLHEYW_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.5485177165	3	427.548518	1279.62372	1.7206	0.00073563	-2.7425	-0.0011726	-1.022	-0.00043694	427.881166532415	22.959	0.072201	22.959	22.959	23.031	0	1440	43	0.7506418	0.025960147	0.7506418	455.84366	0	15.764862						81	4	3	NaN	NaN	NaN	0.40649	1	18417	18417		8.9416	6.2374	1	6912.1			4638	3565	2727	2768	3652	3652					-0.004903163224753371
EYKLLHEYW	9	Unmodified	_EYKLLHEYW_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.8191383414501	2	640.819138	1279.62372	2.1534	0.0013799	-2.8073	-0.0017989	-0.65389	-0.00041903	640.8164913908867	23.127	0.16871	23.114	23.041	23.21	-0.013296	1137	49	0.9369253	0.029352665	0.93540585	379.31543	0	11.883484						147	8	3	NaN	NaN	NaN	0.42817	1	17599	17599		12.57	3.6506	1	13284			4639	3565	2727	2768	3653	3653					-0.004903163224753371
EYKLLHEYW	9	Unmodified						0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	640.819138	1279.62372	2.1552	0.0013811	-3.8586	-0.0024727	-1.7034	-0.0010916	640.817953480235	22.959	0.1926	22.959	22.887	23.079	0	1140	55	0.93509084	0.033025324	0.93509084	378.57275		13.370331	-0.077283	-0.00062166	-0.0001575	NaN	12.57	208	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20134			4640	3565	2727	2768							-0.004903163224753371
EYLADLYHF	9	Unmodified	_EYLADLYHF_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.77693917575	2	585.776939	1169.53933	1.8404	0.001078	-1.9181	-0.0011236	-0.077746	-4.5542E-05	585.7756470114043	27.736	0.16892	27.736	27.688	27.857	0	1137	58	0.9369253	0.034861922	0.9369253	379.69644	0	14.128052						210	8	3	NaN	NaN	NaN	0.078597	1	15465	15465		38.918	24.493	1	35163			4641	1191	2728	2769	3654	3654					-0.038662671392330594
EYLADLYHF	9	Unmodified	_EYLADLYHF_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.77693917575	2	585.776939	1169.53933	1.0765	0.00063061	-0.65905	-0.00038606	0.41749	0.00024455	585.7767453584023	27.735	0.16898	27.726	27.702	27.87	-0.009552	1134	64	0.9387595	0.0385316	0.93724006	380.43976	0	15.615234						271	8	4	NaN	NaN	NaN	0.14945	1	14926	14926		28.667	17.496	1	40745			4642	1191	2728	2769	3655	3655					-0.038662671392330594
EYLDAIKKF	9	Unmodified	_EYLDAIKKF_					0	0	0		chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1;nc|ENSG00000057149|P29508-2|SERPINB3;ENSG00000206073|ENST00000341074|SERPINB4;ENSG00000057149|ENST00000283752|SERPINB3	chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1	chr18:63640991-63641091|133|33.91|0.17|7.64|-|0|TE_info:L3,L3_dup42828,CR1,LINE,donor,+,63641091,63641122|SERPINB4,None|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8107819931	2	563.810782	1125.60701	1.8373	0.0010359	-7.604	-0.0042872	-5.7667	-0.0032513	563.8065923273299	21.585	0.09635	21.585	21.561	21.657	0	1194	58	0.902037	0.034933507	0.902037	365.72397	0	14.163513						133	5	3	NaN	NaN	NaN	0.48181	1	13919	13919		10.36	3.3758	1	16734			4643	133	2729	2770	3656	3656					0.04923182791549152
EYLDKWFVL	9	Unmodified	_EYLDKWFVL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.8186070252001	2	606.818607	1211.62266	0.26393	0.00016016	-3.509	-0.0021293	-3.2451	-0.0019692	606.816095694136	31.838	0.072395	31.833	31.809	31.881	-0.0044155	1167	52	0.91857195	0.031209052	0.9170525	372.10785	0	12.642609						85	4	2	NaN	NaN	NaN	0.2345	1	16094	16094		23.118	9.6545	1	11554			4644	2986	2730	2771	3657	3657					0.025314693086102125
EYLDLFGNTF	10	Unmodified	_EYLDLFGNTF_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.78750386205	2	609.787504	1217.56045	1.2512	0.00076297	-1.4964	-0.00091246	-0.24515	-0.00014949	609.7864047669303	34.589	0.12067	34.589	34.565	34.686	0	1140	88	0.93509084	0.053233266	0.93509084	378.77875	0	21.563293						278	6	3	NaN	NaN	NaN	0.047882	1	16925	16925		53.14	28.578	1	35296			4645	4409	2731	2772	3658	3658					-0.03962301830392789
EYLDLFGNTF	10	Unmodified	_EYLDLFGNTF_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.78750386205	2	609.787504	1217.56045	0.75383	0.00045968	0.38085	0.00023224	1.1347	0.00069192	610.2897891193353	34.588	0.21703	34.587	34.515	34.732	-0.0006485	1137	70	0.9369253	0.04220581	0.93540585	379.52182	0	17.096375						333	10	3	NaN	NaN	NaN	0.47601	1	16250	16250		20.449	6.4999	1	38340			4646	4409	2731	2772	3659	3659					-0.03962301830392789
EYLDLSHNQ	9	Unmodified	_EYLDLSHNQ_					0	0	0		nc|ENSG00000132000|Q6PEZ8-2|PODNL1;nc|ENSG00000174130|Q9Y2C9-2|TLR6;nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1;ENSG00000174130|ENST00000508254|TLR6	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.75927773885	2	559.759278	1117.504	1.0589	0.0005927	-7.5482	-0.0042252	-6.4893	-0.0036325	559.7551643343728	30.777	0.024124	30.777	30.753	30.777	0	1203	112	0.8965218	0.068116724	0.8965218	363.51974	0	27.619812						171	2	3	NaN	NaN	NaN	0.36492	1	13565	13565		15.175	4.5704	1	24557			4647	2736	2732	2773	3660	3660					-0.05004929667052238
EYLDLSHNQ	9	Unmodified						0	0	0		nc|ENSG00000132000|Q6PEZ8-2|PODNL1;nc|ENSG00000174130|Q9Y2C9-2|TLR6;nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1;ENSG00000174130|ENST00000508254|TLR6	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.759278	1117.504	1.0758	0.0006022	-8.268	-0.0046281	-7.1922	-0.0040259	559.7544761533229	30.752	0.12062	30.746	30.673	30.794	-0.0057545	1200	112	0.89836043	0.068116724	0.896841	364.26526		27.619812	-0.015468	-0.00042156	0.00015958	NaN	15.175	264	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31938			4648	2736	2732	2773							-0.05004929667052238
EYLDRAEKL	9	Unmodified	_EYLDRAEKL_					0	0	0		ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENSG00000119541|ENST00000238497|VPS4B	ENSG00000119541|ENST00000238497|VPS4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8009455883	2	568.800946	1135.58734	1.9306	0.0010981	-4.4268	-0.002518	-2.4962	-0.0014198	568.7981226294722	16.638	0.095993	16.638	16.614	16.71	0	1209	31	0.892844	0.01839298	0.892844	361.95822	0	7.4565125						73	5	3	NaN	NaN	NaN	0.41766	1	14301	14301		13.003	4.0409	1	6444.8			4649	2218	2733	2774	3661	3661					0.02496806780800398
EYLDRIGQLFF	11	Unmodified	_EYLDRIGQLFF_					0	0	0		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.86407716135	2	700.864077	1399.7136	0.85654	0.00060031	-2.7617	-0.0019356	-1.9052	-0.0013353	700.8617571308545	32.394	0.19303	32.394	32.345	32.539	0	1074	52	0.9754029	0.031111658	0.9754029	394.53116	0	12.584015						262	9	4	NaN	NaN	NaN	5.6E-05	1	20064	20064		88.822	69.658	1	34944			4650	6062	2734	2775	3662	3662					0.029733132860656042
EYLDRIGQLFF	11	Unmodified	_EYLDRIGQLFF_					0	0	0		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.86407716135	2	700.864077	1399.7136	0.51538	0.00036121	-2.8007	-0.0019629	-2.2853	-0.0016017	700.8633477684402	32.441	0.2413	32.438	32.365	32.607	-0.0031052	1074	49	0.9754029	0.029279947	0.97388345	394.53116	0	11.84314						326	11	4	NaN	NaN	NaN	0.077819	1	19119	19119		42.779	26.195	1	37896			4651	6062	2734	2775	3663	3663					0.029733132860656042
EYLENIEIP	9	Unmodified	_EYLENIEIP_					0	0	0		tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2820543434	2	560.282054	1118.54956	1.7076	0.00095672	-6.6503	-0.003726	-4.9427	-0.0027693	560.2782414835498	20.79	0.3372	20.79	20.694	21.031	0	1230	61	0.8799654	0.03680992	0.8799654	356.80243	0	14.925415						572	15	5	NaN	NaN	NaN	0.13602	1	13614	13614		30.61	1.7145	1	218610			4652	13815	2735	2776	3664	3664					-0.004977042046675706
EYLENIEIP	9	Unmodified	_EYLENIEIP_					0	0	0		tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	tr|U7SRE4|U7SRE4_FUSNUTypeIrestrictionenzyme,SsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01569PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2820543434	2	560.282054	1118.54956	1.3539	0.00075858	-4.6674	-0.0026151	-3.3135	-0.0018565	560.2787031562109	20.815	0.28897	20.801	20.68	20.969	-0.014088	1230	61	0.8799654	0.03680992	0.878446	356.80243	0	14.925415						537	13	4	NaN	NaN	NaN	0.024221	1	13212	13212		66.656	13.877	1	236750			4653	13815	2735	2776	3665	3665					-0.004977042046675706
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.28767103755	2	560.287671	1118.56079	1.4516	0.00081334	-4.9656	-0.0027822	-3.5139	-0.0019688	560.7847322285954	20.718	0.048243	20.718	20.694	20.742	0	1227	58	0.88180584	0.034963727	0.88180584	357.5486	0	14.176819						80	3	2	NaN	NaN	NaN	0.024359	1	13616	13616		66.481	29.179	1	57467			4654	1944	2736	2777	3666	3666					0.0062511788946721936
EYLFSFAQN	9	Unmodified	_EYLFSFAQN_					0	0	0			REV__ENST00000589144.5_1_19:19387459-19413207:-|nuORF	REV__ENST00000589144.5_1_19:19387459-19413207:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7612891115501	2	559.761289	1117.50803	1.024	0.00057318	-10.564	-0.0059132	-9.5398	-0.00534	559.7554936618956	30.849	0.096497	30.849	30.825	30.922	0	1248	118	0.8689189	0.07179868	0.8689189	352.32736	0	29.112762						254	5	2	NaN	NaN	NaN	0.47587	1	13566	13566		10.605	0.85897	1	30832	+		4655	8971	2737	2778	3667	3667					-0.04602840173311051
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.5536030944	3	375.553603	1123.63898	1.6561	0.00062195	-4.2806	-0.0016076	-2.6245	-0.00098565	375.5521022448324	22.115	0.096542	22.115	22.091	22.187	0	1425	37	0.7599118	0.02224183	0.7599118	462.15533	0	13.526825						87	5	2	NaN	NaN	NaN	0.31737	1	13841	13841		20.513	16.545	1	16408			4656	2866	2738	2779	3668	3668					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8267664083	2	562.826766	1123.63898	1.979	0.0011138	-0.96518	-0.00054323	1.0138	0.00057061	562.8264632390753	22.115	0.12065	22.115	22.091	22.212	0	1194	61	0.902037	0.036750257	0.902037	365.7317	0	14.900421						232	6	4	NaN	NaN	NaN	0.030669	1	13847	13847		58.235	34.901	1	47073			4657	2866	2738	2779	3669	3669					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.5536030944	3	375.553603	1123.63898	1.3044	0.00048988	-2.64	-0.00099147	-1.3356	-0.00050158	375.5525825292188	22.259	0.16874	22.246	22.173	22.342	-0.013731	1422	37	0.7617651	0.022237062	0.7602457	463.2825	0	13.523895						152	8	3	NaN	NaN	NaN	0.094712	1	13413	13413		38.131	24.668	1	15471			4658	2866	2738	2779	3670	3670					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8267664083	2	562.826766	1123.63898	1.2224	0.00068799	-0.41646	-0.00023439	0.80592	0.0004536	562.8258619865353	22.235	0.16886	22.222	22.149	22.318	-0.013731	1200	97	0.89836043	0.058781385	0.896841	364.241	0	23.832977						211	8	2	NaN	NaN	NaN	0.054111	1	13416	13416		45.165	24.609	1	64398			4659	2866	2738	2779	3671	3671					0.08210595265359188
EYLHPCPPY	9	Unmodified	_EYLHPCPPY_					0	0	0			REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7524098344501	2	559.75241	1117.49027	1.1001	0.0006158	2.9745	0.001665	4.0746	0.0022808	559.7536488873703	30.824	0.072441	30.818	30.818	30.891	-0.0057564	1197	115	0.9001988	0.06995392	0.8986794	365.0107	0	28.364777						204	4	2	NaN	NaN	NaN	0.45297	1	13165	13165		11.548	0	1	25546	+		4660	13251	2739	2780	3672	3672					-0.06377878699845496
EYLHPCPPY	9	Unmodified	_EYLHPCPPY_					0	0	0			REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7524098344501	2	559.75241	1117.49027	1.0758	0.0006022	4.0014	0.0022398	5.0773	0.002842	559.7544761533229	30.752	0.12062	30.746	30.673	30.794	-0.0057545	1200	112	0.89836043	0.068116724	0.896841	364.26526	0	27.619812						264	6	3	NaN	NaN	NaN	0.36492	1	13166	13166		15.175	2.5875	1	31938	+		4661	13251	2739	2780	3673	3673					-0.06377878699845496
EYLHPCPPY	9	Unmodified						0	0	0			REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.75241	1117.49027	1.024	0.00057318	5.2989	0.0029661	6.3229	0.0035393	559.7554936618956	30.849	0.096497	30.849	30.825	30.922	0	1248	118	0.8689189	0.07179868	0.8689189	352.32736		29.112762	0.015499	0.0012584	-0.01488	NaN	11.548	254	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30832	+		4662	13251	2739	2780							-0.06377878699845496
EYLHPCPPY	9	Unmodified						0	0	0			REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	REV__nc|ENSG00000266714|Q96JP2-2|MYO15B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.75241	1117.49027	1.1001	0.0006158	2.9745	0.001665	4.0746	0.0022808	559.7536488873703	30.824	0.072441	30.818	30.818	30.891	-0.0057564	1197	115	0.9001988	0.06995392	0.8986794	365.0107		28.364777	-0.015499	-0.0013438	0.01488	NaN	11.548	204	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25546	+		4663	13251	2739	2780							-0.06377878699845496
EYLHQHWIL	9	Unmodified	_EYLHQHWIL_					0	0	0		ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8194726924501	2	619.819473	1237.62439	1.7074	0.0010583	-4.5511	-0.0028209	-2.8437	-0.0017626	619.8159160419406	22.959	0.16847	22.959	22.911	23.079	0	1155	76	0.92591566	0.0458858	0.92591566	374.994	0	18.58368						307	8	4	NaN	NaN	NaN	0.2345	1	17468	17468		23.118	12.757	1	45599			4664	2847	2740	2781	3674	3674					0.015085231172179192
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.33389294865	2	561.333893	1120.65323	0.89733	0.0005037	-2.5882	-0.0014528	-1.6908	-0.00094912	561.3321516804325	31.477	0.096544	31.477	31.477	31.573	0	1212	85	0.8910048	0.051494837	0.8910048	361.27032	0	20.879303						183	5	3	NaN	NaN	NaN	0.41766	1	13722	13722		13.003	6.1396	1	18194			4665	5753	2741	2782	3675	3675					0.09773247693647136
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.33389294865	2	561.333893	1120.65323	1.6842	0.00094537	-0.86645	-0.00048637	0.81771	0.00045901	561.3330997819102	30.849	0.36197	30.849	30.753	31.115	0	1206	115	0.894683	0.06981051	0.894683	362.76172	0	28.305634						1043	16	5	NaN	NaN	NaN	0.019103	1	13724	13724		73.133	23.172	1	663470			4666	5753	2741	2782	3676	3676					0.09773247693647136
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.33389294865	2	561.333893	1120.65323	1.8239	0.0010238	-1.3518	-0.00075882	0.47207	0.00026499	561.3329386926223	30.848	0.31372	30.842	30.746	31.06	-0.0057545	1203	97	0.8965218	0.058806837	0.89500237	363.50726	0	23.844025						1093	14	5	NaN	NaN	NaN	0.011206	1	13317	13317		89.256	28.274	1	651960			4667	5753	2741	2782	3677	3677					0.09773247693647136
EYLIVFPKL	9	Unmodified						0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.333893	1120.65323	1.4623	0.00082083	-1.2855	-0.00072159	0.17679	9.9237E-05	561.3330418009336	31.089	0.048269	31.084	31.084	31.133	-0.0050716	1203	34	0.8965218	0.020226836	0.89500237	363.50726		8.201263	0.11761	-0.0004581	0.00015968	NaN	73.133	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5517.9			4668	5753	2741	2782							0.09773247693647136
EYLKLLFTL	9	Unmodified	_EYLKLLFTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3391752918002	2	570.339175	1138.6638	1.1102	0.00063322	-2.229	-0.0012713	-1.1187	-0.00063806	570.3380835712053	33.069	0.12064	33.069	33.045	33.166	0	1113	43	0.9515937	0.025658667	0.9515937	385.7628	0	10.401642						169	6	4	NaN	NaN	NaN	0.015447	1	14416	14416		77.761	45.308	1	22416			4669	4986	2742	2783	3678	3678					0.10001230348120771
EYLKLLFTL	9	Unmodified	_EYLKLLFTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3391752918002	2	570.339175	1138.6638	0.65724	0.00037485	-2.2172	-0.0012646	-1.56	-0.00088971	570.3376327446798	33.14	0.14473	33.138	33.09	33.235	-0.0024757	1107	43	0.9552588	0.025658667	0.9537394	387.24857	0	10.401642						185	7	3	NaN	NaN	NaN	0.02431	1	13946	13946		66.544	37.648	1	21176			4670	4986	2742	2783	3679	3679					0.10001230348120771
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.88160828933337	3	383.881608	1148.623	1.424	0.00054665	-1.63	-0.00062571	-0.20595	-7.906E-05	383.8807074523404	23.899	0.14472	23.899	23.851	23.995	0	1449	43	0.74507743	0.025971413	0.74507743	453.01425	0	15.790863						124	7	3	NaN	NaN	NaN	0.12328	1	14767	14767		23.086	12.882	1	15742			4671	5836	2743	2784	3680	3680					0.054628890284675435
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3187742007001	2	575.318774	1148.623	1.7077	0.00098246	1.0342	0.00059497	2.7418	0.0015774	575.3202840026988	23.899	0.16883	23.899	23.851	24.019	0	1176	55	0.9130621	0.03306806	0.9130621	370.1042	0	13.403931						239	8	5	NaN	NaN	NaN	0.013093	1	14768	14768		83.529	40.534	1	53900			4672	5836	2743	2784	3681	3681					0.054628890284675435
EYLKNIIYRF	10	Unmodified	_EYLKNIIYRF_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.87698757135	2	679.876988	1357.73942	1.1853	0.00080586	-2.0513	-0.0013946	-0.86598	-0.00058876	679.8765247111108	24.43	0.096487	24.43	24.406	24.502	0	1050	37	0.9900381	0.02194339	0.9900381	400.5719	0	8.878357						107	5	3	NaN	NaN	NaN	0.069158	1	19647	19647		45.827	31.402	1	9043.3			4673	5156	2744	2785	3682	3682					0.07486207528359046
EYLKNIIYRF	10	Unmodified	_EYLKNIIYRF_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.5870838697666	3	453.587084	1357.73942	0.69887	0.000317	-1.3443	-0.00060974	-0.6454	-0.00029274	453.5867875107324	24.43	0.096487	24.43	24.406	24.502	0	1413	37	0.7673241	0.022232234	0.7673241	465.6884	0	13.492737						95	5	3	NaN	NaN	NaN	0.3495	1	19649	19649		25.694	16.109	1	9811.5			4674	5156	2744	2785	3683	3683					0.07486207528359046
EYLKNIIYRF	10	Unmodified						0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	453.587084	1357.73942	1.9531	0.00088592	-2.5392	-0.0011518	-0.58607	-0.00026583	453.58524219271857	24.55	0.024036	24.538	24.514	24.538	-0.012394	1407	28	0.77102906	0.016671479	0.7695096	467.93692		10.117889	0.05401	-0.0011715	0.0010928	NaN	25.694	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2665.3			4675	5156	2744	2785							0.07486207528359046
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8582635019501	2	633.858264	1265.70197	1.4165	0.00089784	-2.2704	-0.0014391	-0.85391	-0.00054126	633.8565559166839	29.28	0.14477	29.28	29.232	29.377	0	1098	37	0.960755	0.02198124	0.960755	389.0086	0	8.9002075						138	7	3	NaN	NaN	NaN	0.1802	1	18130	18130		37.231	15.396	1	18472			4676	444;2981	2745	2786	3684	3684					0.07975116262764459
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8582635019501	2	633.858264	1265.70197	1.2004	0.00076086	-1.3763	-0.0008724	-0.17598	-0.00011155	633.8574111407412	29.28	0.16889	29.272	29.248	29.417	-0.0077229	1095	40	0.9625867	0.023809195	0.96106726	389.75024	0	9.64032						173	8	4	NaN	NaN	NaN	0.13684	1	17331	17331		40.957	13.661	1	18448			4677	444;2981	2745	2786	3685	3685					0.07975116262764459
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.78476420785	2	556.784764	1111.55498	1.5662	0.00087204	-0.57022	-0.00031749	0.99598	0.00055455	556.7841565598278	22.621	0.096514	22.621	22.573	22.67	0	1185	55	0.90755045	0.033082366	0.90755045	368.0156	0	13.41507						113	5	2	NaN	NaN	NaN	0.13602	1	13341	13341		30.61	16.569	1	29594			4678	2885	2746	2787	3686	3686					0.0036601937779323634
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	YARS|p.E174K|1|0.33|ENSG00000134684|chr1:32797834-32797834|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.78476420785	2	556.784764	1111.55498	1.3057	0.00072698	1.3398	0.00074599	2.6455	0.001473	556.7860757839699	22.645	0.24109	22.631	22.583	22.824	-0.01354	1182	85	0.9093879	0.05148375	0.90786844	368.76065	0	20.876892						192	11	2	NaN	NaN	NaN	0.03618	1	12966	12966		52.78	26.048	1	35260			4679	2885	2746	2787	3687	3687					0.0036601937779323634
EYLKVGAKLLF	11	Unmodified	_EYLKVGAKLLF_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2;ENST00000432918.5_1_6:43589353-43589629:-|nuORF	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8842812872001	2	640.884281	1279.75401	1.9031	0.0012197	-1.2326	-0.00078995	0.67052	0.00042972	640.8834649342833	25.129	0.096502	25.129	25.105	25.202	0	1071	34	0.977233	0.020131052	0.977233	395.6336	0	8.150085						88	5	3	NaN	NaN	NaN	0.60894	1	18425	18425		13.949	8.2546	1	7036.6			4680	4838	2747	2788	3688	3688					0.12532279676520375
EYLKVGAKLLF	11	Unmodified						0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2;ENST00000432918.5_1_6:43589353-43589629:-|nuORF	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.884281	1279.75401	2.5516	0.0016353	-2.0533	-0.0013159	0.49825	0.00031932	640.8829605912565	25.25	0.096462	25.238	25.189	25.286	-0.012011	1071	31	0.977233	0.018299997	0.97571355	395.63364		7.4087524	0.054199	-0.00060352	-0.00075972	NaN	13.949	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5170.8			4681	4838	2747	2788							0.12532279676520375
EYLLAVIYTL	10	Unmodified	_EYLLAVIYTL_					0	0	0			REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3419149460001	2	599.341915	1196.66928	0.72069	0.00043194	2.8685	0.0017192	3.5892	0.0021511	599.3434919750515	33.094	0.16895	33.094	32.997	33.166	0	1152	43	0.92775106	0.02569741	0.92775106	375.87912	0	10.411346						145	8	2	NaN	NaN	NaN	0.65442	1	16368	16368		11.17	1.4243	1	24350	+		4682	9555	2748	2789	3689	3689					0.07880909139907999
EYLLAVIYTL	10	Unmodified						0	0	0			REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.341915	1196.66928	0.72069	0.00043194	2.8685	0.0017192	3.5892	0.0021511	599.3434919750515	33.094	0.16895	33.094	32.997	33.166	0	1152	43	0.92775106	0.02569741	0.92775106	375.87912		10.411346	-0.082565	0.0011234	0.00075972	NaN	11.17	145	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24350	+		4683	9555	2748	2789							0.07880909139907999
EYLLAVIYTL	10	Unmodified						0	0	0			REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	REV__ENST00000435340.6_1_17:17409107-17410505:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.341915	1196.66928	0.60885	0.00036491	0.56395	0.000338	1.1728	0.00070291	599.3424791571778	33.261	0.04826	33.259	33.235	33.283	-0.0024757	1152	52	0.92775106	0.031192243	0.9262317	375.87912		12.637573	0.082565	-0.001639	-0.00075972	NaN	11.17	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7631.2	+		4684	9555	2748	2789							0.07880909139907999
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3235252276	2	556.323525	1110.6325	1.2272	0.00068272	-2.1358	-0.0011882	-0.90864	-0.0005055	556.3225053554985	27.06	0.1931	27.06	27.012	27.205	0	1191	73	0.90387505	0.044128895	0.90387505	366.52893	0	17.894653						186	9	2	NaN	NaN	NaN	0.01966	1	13319	13319		72.428	41.818	1	72479			4685	2080	2749	2790	3690	3690					0.0816065731398794
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3235252276	2	556.323525	1110.6325	1.1646	0.00064787	-1.6224	-0.00090261	-0.4579	-0.00025474	556.322641063315	27.084	0.072412	27.074	27.049	27.122	-0.010124	1191	64	0.90387505	0.038610697	0.9023556	366.52893	0	15.656952						163	4	3	NaN	NaN	NaN	0.013696	1	12943	12943		81.699	31.738	1	66193			4686	2080	2749	2790	3691	3691					0.0816065731398794
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2-CPSF3|1|fusion	ASAP2-CPSF3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8160643362501	2	560.816064	1119.61758	1.5805	0.00088635	-4.3013	-0.0024122	-2.7208	-0.0015259	560.8141757505849	24.188	0.048298	24.188	24.164	24.213	0	1191	67	0.90387505	0.04042524	0.90387505	366.4929	0	16.391174						108	3	3	NaN	NaN	NaN	0.01966	1	13662	13662		72.428	0	1	84823			4687	47	2750	2791	3692	3692					0.06255165445986677
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2-CPSF3|1|fusion	ASAP2-CPSF3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8160643362501	2	560.816064	1119.61758	1.3477	0.00075583	-2.5235	-0.0014152	-1.1758	-0.0006594	560.8146174940704	24.333	0.19301	24.333	24.237	24.43	0	1170	61	0.91673553	0.03674233	0.91673553	371.7074	0	14.897858						139	9	3	NaN	NaN	NaN	0.012861	1	13663	13663		84.233	0	1	36085			4688	47	2750	2791	3693	3693					0.06255165445986677
EYLLKVNEI	9	Unmodified						0	0	0		ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|4|fusion;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2-CPSF3|1|fusion	ASAP2-CPSF3|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.816064	1119.61758	1.3278	0.00074468	0.1026	5.7539E-05	1.4304	0.00080222	560.8171906119776	24.333	0.096539	24.32	24.296	24.393	-0.012749	1176	49	0.9130621	0.029393852	0.91154265	370.21793		11.918304	-0.0065083	0.0018224	-0.0025964	NaN	84.233	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32585			4689	47	2750	2791							0.06255165445986677
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8135216473	2	604.813522	1207.61249	0.62348	0.00037709	-1.6379	-0.00099063	-1.0144	-0.00061354	604.8120729885849	33.648	0.16888	33.648	33.576	33.745	0	1191	79	0.90387505	0.047770202	0.90387505	366.1679	0	19.352112						253	8	4	NaN	NaN	NaN	0.13649	1	16673	16673		36.235	21.81	1	35343			4690	2448	2751	2792	3694	3694					0.016988615833724907
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	ENST00000568368.1_1_16:58756047-58768190:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.8135216473	2	604.813522	1207.61249	0.20412	0.00012345	0.40227	0.0002433	0.60639	0.00036675	604.8134478389833	33.647	0.07235	33.645	33.621	33.694	-0.0018463	1191	79	0.90387505	0.047754705	0.9023556	366.1679	0	19.345886						206	4	3	NaN	NaN	NaN	0.048117	1	16003	16003		50.315	31.152	1	33286			4691	2448	2751	2792	3695	3695					0.016988615833724907
EYLQLLEAR	9	Unmodified	_EYLQLLEAR_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.81131330935	2	567.811313	1133.60807	2.4014	0.0013635	-2.8065	-0.0015936	-0.40516	-0.00023005	567.8094662083425	18.628	0.16794	18.628	18.532	18.7	0	1218	55	0.8873258	0.033110976	0.8873258	359.72867	0	13.423462						140	8	3	NaN	NaN	NaN	0.23112	1	14228	14228		23.334	0	1	15615	+		4692	8568	2752	2793	3696	3696					0.04661397160452907
EYLQLLNLL	9	Unmodified	_EYLQLLNLL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.8264320573	2	559.826432	1117.63831	0.71207	0.00039864	-1.9019	-0.0010647	-1.1898	-0.00066611	559.8251740779995	38.444	0.24028	38.444	38.372	38.612	0	1203	61	0.8965218	0.036762178	0.8965218	363.5192	0	14.90625						301	11	3	NaN	NaN	NaN	0.02857	1	13592	13592		60.982	23.679	1	48746			4693	2006	2753	2794	3697	3697					0.08419755825661923
EYLQLLNLL	9	Unmodified	_EYLQLLNLL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.8264320573	2	559.826432	1117.63831	1.4351	0.00080341	-1.4093	-0.00078897	0.025792	1.4439E-05	559.8257060157755	38.417	0.19238	38.421	38.373	38.566	0.0040245	1197	61	0.9001988	0.03675419	0.8986794	365.01013	0	14.902985						299	9	3	NaN	NaN	NaN	0.017076	1	13192	13192		75.698	17.463	1	45416			4694	2006	2753	2794	3698	3698					0.08419755825661923
EYLRMSGIYW	10	Unmodified	_EYLRMSGIYW_					0	0	0		ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3184482372002	2	659.318448	1316.62234	1.3885	0.00091549	-3.3066	-0.0021801	-1.9181	-0.0012646	659.3163777401942	27.615	0.19304	27.615	27.567	27.76	0	1116	55	0.94976085	0.032986104	0.94976085	384.3965	0	13.350464						258	9	4	NaN	NaN	NaN	0.00071861	1	19052	19052		90.252	64.137	1	40454			4695	3121	2754	2795	3699	3699					-0.02330273682855477
EYLRMSGIYW	10	Unmodified	_EYLRMSGIYW_					0	0	0		ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3184482372002	2	659.318448	1316.62234	1.155	0.00076152	-3.5423	-0.0023355	-2.3872	-0.001574	659.3162542831957	27.639	0.19302	27.629	27.605	27.798	-0.009552	1113	67	0.9515937	0.040320754	0.95007426	385.13834	0	16.319						352	9	4	NaN	NaN	NaN	0.080496	1	18211	18211		48.65	25.316	1	45865			4696	3121	2754	2795	3700	3700					-0.02330273682855477
EYLRMSGIYW	10	Oxidation (M)	_EYLRM(Oxidation (M))SGIYW_		EYLRM(1)SGIYW		EYLRM(51)SGIYW	0	0	1		ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3159055482502	2	667.315906	1332.61726	1.578	0.001053	-2.1324	-0.001423	-0.55448	-0.00037001	667.314548387154	24.309	0.1931	24.296	24.199	24.393	-0.012749	1107	64	0.9552588	0.038481772	0.9537394	386.57352	0	15.572754						290	9	4	NaN	NaN	NaN	0.060038	1	18433	18433		51.467	23.678	1	55267			4697	3121	2754	2796	3701	3701		351			-0.035745775454870454
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.2399070485334	3	413.239907	1236.69789	1.3839	0.00057187	-2.7315	-0.0011288	-1.3477	-0.00055691	413.23880749488137	24.719	0.16892	24.719	24.671	24.84	0	1407	40	0.77102906	0.024080992	0.77102906	468.3975	0	14.62915						226	8	4	NaN	NaN	NaN	0.045904	1	17450	17450		48.65	18.615	1	45487			4698	3033	2755	2797	3702	3702					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3562223395002	2	619.356222	1236.69789	1.2443	0.00077067	-1.6563	-0.0010258	-0.41201	-0.00025518	619.3550638815593	24.719	0.21717	24.719	24.671	24.888	0	1137	55	0.9369253	0.033021748	0.9369253	379.456	0	13.37384						302	10	4	NaN	NaN	NaN	0.0056438	1	17451	17451		104.2	68.902	1	72776			4699	3033	2755	2797	3703	3703					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.2399070485334	3	413.239907	1236.69789	1.2354	0.0005105	-2.4776	-0.0010238	-1.2422	-0.00051333	413.238980939916	24.984	0.31362	24.972	24.827	25.141	-0.012392	1407	46	0.77102906	0.027788818	0.7695096	468.3975	0	16.881561						274	14	4	NaN	NaN	NaN	0.090258	1	16724	16724		37.231	19.261	1	34278			4700	3033	2755	2797	3704	3704					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3562223395002	2	619.356222	1236.69789	1.0672	0.000661	-1.4374	-0.00089026	-0.37016	-0.00022926	619.355320543966	24.96	0.45839	24.948	24.803	25.261	-0.012394	1137	43	0.9369253	0.02568084	0.93540585	379.456	0	10.400757						475	20	3	NaN	NaN	NaN	0.49999	1	16725	16725		6.8632	2.5531	1	72418			4701	3033	2755	2797	3705	3705					0.08901071559716911
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.8194726924501	2	625.819473	1249.62439	1.5728	0.00098431	-4.7176	-0.0029524	-3.1448	-0.0019681	625.8154387666806	24.647	0.24126	24.647	24.574	24.816	0	1134	79	0.9387595	0.047708333	0.9387595	380.15546	0	19.319733						496	11	4	NaN	NaN	NaN	0.19268	1	17769	17769		25.801	18.213	1	103710			4702	2026	2756	2798	3706	3706					0.009565231172246058
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.5487406171667	3	417.548741	1249.62439	1.5196	0.00063452	-2.5584	-0.0010683	-1.0388	-0.00043376	417.54753975492827	24.647	0.21713	24.647	24.598	24.816	0	1437	67	0.7524962	0.040807724	0.7524962	457.0867	0	24.78775						343	10	4	NaN	NaN	NaN	0.21199	1	17770	17770		32.778	14.22	1	76691			4703	2026	2756	2798	3707	3707					0.009565231172246058
EYLSRHWLF	9	Unmodified						0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	625.819473	1249.62439	1.0128	0.00063383	-0.27313	-0.00017093	0.73967	0.0004629	626.3205247857974	24.84	0.096502	24.827	24.779	24.875	-0.012392	1134	52	0.9387595	0.031185508	0.93724006	380.15543		12.628723	0.090223	0.0032876	-0.00075972	NaN	25.801	150	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41183			4704	2026	2756	2798							0.009565231172246058
EYLTKQVEL	9	Unmodified	_EYLTKQVEL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8056966152001	2	561.805697	1121.59684	1.8435	0.0010357	-2.1016	-0.0011807	-0.25806	-0.00014498	561.8044037061603	19.492	0.07201	19.492	19.492	19.564	0	1221	76	0.885486	0.04600489	0.885486	359.029	0	18.653137						164	4	4	NaN	NaN	NaN	0.46713	1	13758	13758		8.2448	0	1	30189			4705	3287	2757	2799	3708	3708					0.04090575066334168
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.2131350463667	3	370.213135	1107.61758	1.932	0.00071527	-1.651	-0.00061122	0.28104	0.00010404	370.2128247352101	17.765	0.095879	17.765	17.717	17.813	0	1458	49	0.7395112	0.029694438	0.7395112	449.827	0	18.062439						88	5	2	NaN	NaN	NaN	0.43456	1	13189	13189		12.307	4.0619	1	11052			4706	3312	2758	2800	3709	3709					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8160643362501	2	554.816064	1107.61758	1.7876	0.00099178	-1.2831	-0.00071191	0.50443	0.00027986	554.8149332933667	17.741	0.14388	17.741	17.717	17.861	0	1212	82	0.8910048	0.04969603	0.8910048	361.322	0	20.152802						236	7	4	NaN	NaN	NaN	0.00013535	1	13190	13190		134.11	58.41	1	67160			4707	3312	2758	2800	3710	3710					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.2131350463667	3	370.213135	1107.61758	2.0658	0.00076478	-6.4376	-0.0023833	-4.3718	-0.0016185	370.21012285304334	17.834	0.16791	17.82	17.772	17.94	-0.013786	1455	64	0.7413668	0.038980305	0.73984736	450.95575	0	23.710815						134	8	2	NaN	NaN	NaN	0.28943	1	12817	12817		19.592	11.347	1	15169			4708	3312	2758	2800	3711	3711					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.8160643362501	2	554.816064	1107.61758	1.9368	0.0010746	-2.5804	-0.0014316	-0.64355	-0.00035705	554.8144024683572	17.834	0.14397	17.82	17.772	17.916	-0.013786	1212	109	0.8910048	0.06622201	0.88948536	361.322	0	26.854492						329	7	4	NaN	NaN	NaN	2.9865E-07	1	12818	12818		145.18	72.755	1	83125			4709	3312	2758	2800	3712	3712					0.06807165446002728
EYLTPEEMVTF	11	Oxidation (M)	_EYLTPEEM(Oxidation (M))VTF_		EYLTPEEM(1)VTF		EYLTPEEM(75)VTF	0	0	1		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.81031864385	2	687.810319	1373.60608	1.806	0.0012422	-2.2328	-0.0015357	-0.42674	-0.00029352	687.8091417825647	27.253	0.24128	27.253	27.109	27.35	0	1098	88	0.960755	0.0530957	0.960755	388.67862	0	21.480133						424	11	4	NaN	NaN	NaN	0.0040393	1	19833	19833		75.089	45.053	1	68583			4710	4994	2759	2801	3713	3713		523			-0.06577444430308788
EYLTPEEMVTF	11	Oxidation (M)	_EYLTPEEM(Oxidation (M))VTF_		EYLTPEEM(1)VTF		EYLTPEEM(78)VTF	0	0	1		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.81031864385	2	687.810319	1373.60608	1.2419	0.0008542	-2.57	-0.0017677	-1.3281	-0.00091348	687.8085721863414	27.277	0.16891	27.267	27.194	27.363	-0.010126	1098	88	0.960755	0.053089917	0.9592356	388.67862	0	21.477844						364	8	3	NaN	NaN	NaN	0.00074833	1	18900	18900		78.289	52.175	1	69585			4711	4994	2759	2801	3714	3714		523			-0.06577444430308788
EYLTQMWHF	9	Unmodified	_EYLTQMWHF_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.7842412791	2	627.784241	1253.55393	1.3325	0.00083652	1.062	0.00066669	2.3945	0.0015032	627.7854060005405	29.353	0.072359	29.353	29.329	29.401	0	1152	64	0.92775106	0.03854406	0.92775106	375.68463	0	15.608093						154	4	4	NaN	NaN	NaN	0.16171	1	17866	17866		27.789	14.326	1	19642			4712	681	2760	2802	3715	3715					-0.06270518262749647
EYLTQMWHF	9	Unmodified	_EYLTQMWHF_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.7842412791	2	627.784241	1253.55393	0.87103	0.00054682	3.5901	0.0022538	4.4612	0.0028006	627.7879677329911	29.352	0.28959	29.344	29.175	29.465	-0.0077209	1155	70	0.92591566	0.04221493	0.9243962	374.94138	0	17.094543						273	13	3	NaN	NaN	NaN	0.41766	1	17100	17100		13.003	5.4152	1	33671			4713	681	2760	2802	3716	3716					-0.06270518262749647
EYLTQMWHF	9	Oxidation (M)	_EYLTQM(Oxidation (M))WHF_		EYLTQM(1)WHF		EYLTQM(71)WHF	0	0	1		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.78169859015	2	635.781699	1269.54884	2.2707	0.0014437	-2.9449	-0.0018723	-0.67414	-0.00042861	635.7814793721913	26.07	0.19308	26.059	25.938	26.131	-0.011137	1146	64	0.93142134	0.0385316	0.9299019	377.1191	0	15.600891						337	9	4	NaN	NaN	NaN	0.021105	1	17404	17404		70.6	38.924	1	42671			4714	681	2760	2803	3717	3717		70			-0.07514822125381215
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.3106148176	2	565.310615	1128.60668	2.5811	0.0014591	-0.76475	-0.00043232	1.8163	0.0010268	565.3102808436744	25.853	0.16891	25.853	25.829	25.998	0	1176	58	0.9130621	0.034907043	0.9130621	370.18207	0	14.152374						281	8	4	NaN	NaN	NaN	0.006197	1	14040	14040		100.15	41.946	1	172960			4715	2134	2761	2804	3718	3718					0.04751763071703863
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.3106148176	2	565.310615	1128.60668	2.2999	0.0013002	-1.1392	-0.00064401	1.1607	0.00065616	565.3096186897809	25.877	0.1448	25.865	25.817	25.962	-0.0116	1176	61	0.9130621	0.036746264	0.91154265	370.18207	0	14.898041						311	7	4	NaN	NaN	NaN	0.00012056	1	13598	13598		121.66	60.677	1	171710			4716	2134	2761	2804	3719	3719					0.04751763071703863
EYLYFFRVL	9	Unmodified	_EYLYFFRVL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.3344242649	2	625.334424	1248.6543	1.2598	0.00078783	-2.7584	-0.0017249	-1.4986	-0.0009371	625.3324150453623	32.659	0.14479	32.659	32.635	32.78	0	1119	49	0.9479278	0.029333651	0.9479278	383.87143	0	11.878906						173	7	4	NaN	NaN	NaN	0.090258	1	17747	17747		42.318	21.762	1	23743			4717	1471	2762	2805	3720	3720					0.039914620625495445
EYLYFFRVL	9	Unmodified	_EYLYFFRVL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3344242649	2	625.334424	1248.6543	0.6277	0.00039252	-2.9143	-0.0018224	-2.2866	-0.0014299	625.3320773190607	32.706	0.14478	32.703	32.655	32.8	-0.0031052	1116	46	0.94976085	0.027495861	0.9482414	384.61374	0	11.134674						193	7	3	NaN	NaN	NaN	0.3106	1	16999	16999		26.115	9.2566	1	24214			4718	1471	2762	2805	3721	3721					0.039914620625495445
EYMEHTYLI	9	Unmodified	_EYMEHTYLI_					0	0	0		nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.776081896	2	599.776082	1197.53761	1.5548	0.00093253	1.4072	0.00084398	2.962	0.0017765	599.7774437046174	23.489	0.16869	23.489	23.465	23.634	0	1161	94	0.9222442	0.05694139	0.9222442	373.64493	0	23.069672						302	8	4	NaN	NaN	NaN	0.29681	1	16381	16381		19.118	1.3193	1	24637			4719	3319	2763	2806	3722	3722					-0.0532564421951065
EYMEHTYLI	9	Unmodified						0	0	0		nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	nc|ENSG00000141447|Q9BXW6-2|OSBPL1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.776082	1197.53761	1.4329	0.0008594	1.1828	0.00070944	2.6157	0.0015688	599.7769018887856	23.513	0.19301	23.5	23.427	23.62	-0.013294	1161	79	0.9222442	0.04773408	0.92072475	373.64493		19.339355	0.0052282	-0.00011932	-0.00075972	NaN	19.118	311	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28541			4720	3319	2763	2806							-0.0532564421951065
EYMEHVYLI	9	Unmodified	_EYMEHVYLI_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.78644961705	2	598.78645	1195.55835	2.1615	0.0012943	0.022357	1.3387E-05	2.1838	0.0013076	598.7862071566539	25.781	0.36195	25.781	25.636	25.998	0	1161	94	0.9222442	0.05692911	0.9222442	373.65198	0	23.065125						517	16	3	NaN	NaN	NaN	1.433E-07	1	16324	16324		136.23	100.93	1	317860			4721	2659	2764	2807	3723	3723					-0.03161053839835404
EYMEHVYLI	9	Unmodified	_EYMEHVYLI_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.78644961705	2	598.78645	1195.55835	2.1742	0.0013019	0.99532	0.00059599	3.1695	0.0018978	598.786528120908	25.805	0.31376	25.793	25.696	26.01	-0.0116	1161	109	0.9222442	0.06612909	0.92072475	373.65198	0	26.792542						793	14	5	NaN	NaN	NaN	0.014046	1	15685	15685		80.639	53.907	1	358270			4722	2659	2764	2807	3724	3724					-0.03161053839835404
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(120)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7839069281	2	606.783907	1211.55326	1.8817	0.0011418	-1.5099	-0.0009162	0.37176	0.00022558	606.7831188223759	23.562	0.19282	23.562	23.465	23.658	0	1155	94	0.92591566	0.056922972	0.92591566	375.08298	0	23.059143						717	9	5	NaN	NaN	NaN	0.00050979	1	16756	16756		115.51	92.175	1	305870			4723	2659	2764	2808	3725	3725		302			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(120)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7839069281	2	606.783907	1211.55326	1.8368	0.0011145	-1.6925	-0.001027	0.14428	8.7548E-05	606.7833832383869	23.561	0.26524	23.548	23.452	23.717	-0.013048	1155	97	0.92591566	0.05876237	0.9243962	375.08298	0	23.80429						817	12	5	NaN	NaN	NaN	0.00010594	1	16086	16086		122.55	88.111	1	327240			4724	2659	2764	2808	3726	3726		302			-0.04405357702466972
EYMEMIIQF	9	Oxidation (M)	_EYM(Oxidation (M))EMIIQF_		EYM(0.883)EM(0.117)IIQF		EYM(8.8)EM(-8.8)IIQF	0	0	1		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.27231778655	2	610.272318	1218.53008	0.50966	0.00031103	-2.7829	-0.0016983	-2.2733	-0.0013873	610.2702306516445	31.115	0.2655	31.115	30.97	31.235	0	1176	79	0.9130621	0.04774952	0.9130621	369.85223	0	19.341827						331	12	3	NaN	NaN	NaN	0.030391	1	16942	16942		58.599	40.629	2	54168			4725	2716;551	2765	2809	3727	3727		54			-0.07044119811439487
EYMEMIIQF	9	Oxidation (M)	_EYM(Oxidation (M))EMIIQF_		EYM(0.995)EM(0.005)IIQF		EYM(23)EM(-23)IIQF	0	0	1		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.27231778655	2	610.272318	1218.53008	0.72034	0.0004396	-1.4486	-0.00088403	-0.72824	-0.00044443	610.2714095313842	31.114	0.26547	31.109	31.012	31.277	-0.0050716	1176	70	0.9130621	0.042251408	0.91154265	369.8522	0	17.114685						427	12	4	NaN	NaN	NaN	0.025843	1	16260	16260		64.55	46.58	2	62944			4726	2716;551	2765	2809	3728	3728		54			-0.07044119811439487
EYMEMIIQF	9	Unmodified	_EYMEMIIQF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.2748604755001	2	602.27486	1202.53517	0.77821	0.0004687	7.0929	0.0042719	7.8712	0.0047406	602.7824894802366	34.275	0.16861	34.274	34.249	34.418	-0.0012474	1194	70	0.902037	0.042297065	0.9005176	365.4407	0	17.135742						137	8	2	NaN	NaN	NaN	0.44082	1	15888	15888		12.049	3.1071	1	13469			4727	2716;551	2765	2810	3729	3729					-0.05799815948807918
EYMIQFNRL	9	Unmodified	_EYMIQFNRL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3053408619501	2	607.305341	1212.59613	1.7988	0.0010924	-2.2443	-0.001363	-0.44547	-0.00027053	607.3041026694879	25.684	0.21717	25.684	25.636	25.853	0	1158	76	0.92408	0.045910537	0.92408	374.33575	0	18.5979						188	10	2	NaN	NaN	NaN	0.016254	1	16793	16793		76.739	38.608	1	60345			4728	2651	2766	2811	3730	3730					-0.0016654285436743521
EYMKHTRLF	9	Unmodified	_EYMKHTRLF_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.8779808685666	3	408.877981	1223.61211	1.4726	0.00060211	-0.8866	-0.00036251	0.58599	0.0002396	409.2121716853453	16.254	0.16805	16.254	16.206	16.374	0	1455	52	0.7413668	0.031555533	0.7413668	450.43085	0	19.17212						211	8	4	NaN	NaN	NaN	0.06409	1	17064	17064		41.017	30.155	1	17386			4729	5087	2767	2812	3731	3731					0.009251633825215322
EYMKHTRLF	9	Unmodified						0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	408.877981	1223.61211	2.4218	0.00099022	2.2086	0.00090306	4.6304	0.0018933	408.87783082685024	16.634	0.047966	16.621	16.597	16.645	-0.013294	1455	37	0.7413668	0.022273242	0.73984736	450.43082		13.532532	0.18367	0.0027338	-0.00075972	NaN	41.017	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2841.5			4730	5087	2767	2812							0.009251633825215322
EYMLEKSFYQF	11	Unmodified	_EYMLEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.84195312325	2	742.841953	1483.66935	1.5759	0.0011707	-0.71952	-0.00053449	0.8564	0.00063617	742.8418745071872	27.519	0.2896	27.519	27.471	27.76	0	1032	70	1.0010062	0.042019784	1.0010062	404.663	0	16.986755						544	13	5	NaN	NaN	NaN	1.6241E-28	1	20525	20525		160.22	114.39	1	111810			4731	523	2768	2813	3732	3732					-0.05313458922410064
EYMLEKSFYQF	11	Unmodified	_EYMLEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.84195312325	2	742.841953	1483.66935	1.4184	0.0010537	-1.9072	-0.0014168	-0.4888	-0.0003631	742.840909321211	27.542	0.41027	27.533	27.46	27.87	-0.0095501	1017	76	1.010141	0.045658886	1.0086216	408.35577	0	18.457886						538	18	5	NaN	NaN	NaN	1.4969E-07	1	19520	19520		98.792	72.991	1	90315			4732	523	2768	2813	3733	3733					-0.05313458922410064
EYMLEKSFYQF	11	Oxidation (M)	_EYM(Oxidation (M))LEKSFYQF_		EYM(1)LEKSFYQF		EYM(97)LEKSFYQF	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.8394104343	2	750.83941	1499.66427	2.1112	0.0015852	-1.9884	-0.001493	0.1228	9.2203E-05	750.8380827189568	25.877	0.072371	25.877	25.829	25.901	0	1032	64	1.0010062	0.038369954	1.0010062	404.6231	0	15.509766						194	4	5	NaN	NaN	NaN	2.0763E-07	1	20581	20581		96.828	80.603	1	57872			4733	523	2768	2814	3734	3734		48			-0.06557762785041632
EYMLEKSFYQF	11	Oxidation (M)	_EYM(Oxidation (M))LEKSFYQF_		EYM(1)LEKSFYQF		EYM(140)LEKSFYQF	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.8394104343	2	750.83941	1499.66427	2.3365	0.0017543	-2.1672	-0.0016272	0.1693	0.00012712	750.8378841519802	25.877	0.048296	25.865	25.841	25.89	-0.0116	1035	82	0.99917877	0.049327433	0.9976593	403.8844	0	19.938995						197	3	5	NaN	NaN	NaN	5.5572E-19	1	19566	19566		140.59	114.79	1	57446			4734	523	2768	2814	3735	3735		48			-0.06557762785041632
EYMLEKSFYQF	11	Oxidation (M)						0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	750.83941	1499.66427	2.4622	0.0018487	-2.6107	-0.0019602	-0.14852	-0.00011152	750.837974653154	25.974	0.19308	25.962	25.914	26.107	-0.0116	1035	64	0.99917877	0.038374126	0.9976593	403.8844		15.511444	0.042341	-0.00031938	-0.0016735	NaN	96.828	399	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93251			4735	523	2768	2814				48			-0.06557762785041632
EYMQAQLLL	9	Unmodified	_EYMQAQLLL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7889923060001	2	554.788992	1107.56343	1.5139	0.00083992	-3.0526	-0.0016935	-1.5386	-0.00085362	554.7879553436238	30.101	0.16899	30.101	30.053	30.222	0	1230	49	0.8799654	0.029447913	0.8799654	356.8455	0	11.941772						169	8	3	NaN	NaN	NaN	0.2961	1	13180	13180		19.164	6.1607	1	17331			4736	731	2769	2815	3736	3736					0.013952500227787823
EYMQAQLLL	9	Unmodified	_EYMQAQLLL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7889923060001	2	554.788992	1107.56343	1.0215	0.0005667	-0.95874	-0.0005319	0.062734	3.4804E-05	554.7882440912423	30.1	0.09654	30.094	30.045	30.142	-0.0064106	1224	46	0.883646	0.02759999	0.88212657	358.33804	0	11.192383						117	5	3	NaN	NaN	NaN	0.054111	1	12808	12808		45.165	28.581	1	14166			4737	731	2769	2815	3737	3737					0.013952500227787823
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000491292.5_1_2:128018779-128018920:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.263664625	2	577.263665	1152.51278	0.77419	0.00044691	-0.15108	-8.7214E-05	0.62311	0.0003597	577.2639806253777	32.32	0.16893	32.316	32.292	32.461	-0.0037613	1188	64	0.90571284	0.038602352	0.9041934	367.11053	0	15.646606						263	8	4	NaN	NaN	NaN	0.048656	1	14376	14376		47.482	26.926	1	26662			4738	4207	2770	2816	3738	3738					-0.05737956030566238
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000491292.5_1_2:128018779-128018920:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1153.5200527834	1	1153.52005	1152.51278	1.6386	0.0018902	5.226	0.0060283	6.8646	0.0079185	1154.5319158968941	32.32	0.14479	32.316	32.268	32.413	-0.0037613	57	70	1.5847093	0.040617228	1.5831898	321.16663	0	8.23172						232	7	3	NaN	NaN	NaN	0.026469	1	14378	14378		63.731	24.272	1	16890			4739	4207	2770	2816	3739	3739					-0.05737956030566238
EYNAFFYSL	9	Unmodified						0	0	0		ENST00000491292.5_1_2:128018779-128018920:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000491292.5_1_2:128018779-128018920:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.263665	1152.51278	1.3347	0.00077049	-0.19381	-0.00011188	1.1409	0.00065862	577.2635013697783	32.321	0.19308	32.321	32.297	32.49	0	1191	61	0.90387505	0.036770105	0.90387505	366.3656		14.903961	0.0024224	-2.1032E-05	-0.00015919	NaN	47.482	196	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21594			4740	4207	2770	2816							-0.05737956030566238
EYNILVNFF	9	Unmodified	_EYNILVNFF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7951319289001	2	579.795132	1157.57571	1.4186	0.00082248	-0.79896	-0.00046323	0.61961	0.00035925	579.7946931106167	37.338	0.28876	37.338	37.29	37.578	0	1203	70	0.8965218	0.042287946	0.8965218	363.36636	0	17.139587						489	13	5	NaN	NaN	NaN	0.00065562	1	15066	15066		115.07	67.588	1	139340			4741	1400	2771	2817	3740	3740					0.0032260975747249176
EYNILVNFF	9	Unmodified	_EYNILVNFF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7951319289001	2	579.795132	1157.57571	1.2169	0.00070557	-0.37311	-0.00021633	0.84381	0.00048924	579.7951298061517	37.359	0.28893	37.362	37.29	37.579	0.0028229	1200	64	0.89836043	0.038610697	0.896841	364.11154	0	15.64917						435	13	5	NaN	NaN	NaN	0.032826	1	14568	14568		55.413	27.624	1	100260			4742	1400	2771	2817	3741	3741					0.0032260975747249176
EYNKHKKVNK	10	Unmodified	_EYNKHKKVNK_					0	0	0		tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3620359989001	2	644.362036	1286.70952	1.1509	0.00074157	0.17508	0.00011282	1.3259	0.00085438	644.363084773937	39.574	0.16822	39.574	39.502	39.67	0	1221	76	0.885486	0.046019793	0.885486	358.4691	0	18.630096						377	8	3	NaN	NaN	NaN	0.77884	1	18548	18548		0.79988	0.10873	1	52647			4743	13820	2772	2818	3742	3742					0.07763268583039462
EYNKHKKVNK	10	Unmodified						0	0	0		tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	644.362036	1286.70952	1.7273	0.001113	-0.97476	-0.0006281	0.75255	0.00048491	644.8623881198322	39.548	0.12013	39.553	39.481	39.601	0.0053368	1218	76	0.8873258	0.046014845	0.8858064	359.21387		18.628082	-0.010481	-0.0009143	0.00016018	NaN	0.79988	264	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30927			4744	13820	2772	2818							0.07763268583039462
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.7721881488501	2	592.772188	1183.52982	1.5496	0.00091855	2.1721	0.0012876	3.7217	0.0022061	592.7728392959867	25.081	0.14475	25.081	25.057	25.202	0	1191	67	0.90387505	0.040442765	0.90387505	366.25204	0	16.387482						221	7	3	NaN	NaN	NaN	0.18779	1	15952	15952		26.115	11.69	1	50477			4745	7519	2773	2819	3743	3743					-0.05460035424766829
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.7721881488501	2	592.772188	1183.52982	1.2281	0.000728	4.6289	0.0027439	5.8571	0.0034719	592.7747316058956	25.105	0.19303	25.093	25.021	25.214	-0.012011	1191	73	0.90387505	0.044119358	0.9023556	366.25204	0	17.877258						280	9	3	NaN	NaN	NaN	0.16171	1	15344	15344		27.789	18.043	1	50593			4746	7519	2773	2819	3744	3744					-0.05460035424766829
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENST00000425988.1_1_13:23411483-23411888:-|nuORF;ENSG00000151151|ENST00000373935|IPMK	ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENST00000425988.1_1_13:23411483-23411888:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2698126354001	2	575.269813	1148.52507	1.5457	0.00088919	2.6122	0.0015027	4.1578	0.0023919	575.2715967549406	21.344	0.2165	21.33	21.186	21.402	-0.014006	1212	115	0.8910048	0.06989348	0.88948536	361.16376	0	28.330933						581	10	3	NaN	NaN	NaN	0.074859	1	14250	14250		39.459	24.283	1	220920			4747	3726	2774	2820	3745	3745					-0.0432491956753438
EYNQWFTKL	9	Unmodified	_EYNQWFTKL_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-4|CARMIL1;ENST00000497227.1_1_6:25466074-25472787:+|nuORF	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.80348827725	2	614.803488	1227.59242	1.6146	0.00099266	3.3034	0.002031	4.918	0.0030236	614.8055161597747	25.805	0.16891	25.805	25.757	25.926	0	1140	103	0.93509084	0.062387884	0.93509084	378.74402	0	25.269257						402	8	4	NaN	NaN	NaN	0.28457	1	17187	17187		27.046	9.0768	1	87189			4748	898	2775	2821	3746	3746					-0.012268893565760663
EYNQWFTKL	9	Unmodified	_EYNQWFTKL_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-4|CARMIL1;ENST00000497227.1_1_6:25466074-25472787:+|nuORF	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.80348827725	2	614.803488	1227.59242	1.6782	0.0010317	2.2187	0.001364	3.8968	0.0023958	614.8047379549197	25.805	0.19308	25.793	25.769	25.962	-0.0116	1140	91	0.93509084	0.055042148	0.9335714	378.74402	0	22.294006						344	9	3	NaN	NaN	NaN	0.015662	1	16493	16493		86.792	53.367	1	80041			4749	898	2775	2821	3747	3747					-0.012268893565760663
EYPAWFEQF	9	Unmodified	_EYPAWFEQF_					0	0	0		nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000198722|ENST00000635942|UNC13B	nc|ENSG00000198722|O14795|UNC13B	nc|ENSG00000198722|O14795|UNC13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.76911414365	2	608.769114	1215.52368	0.8939	0.00054418	-1.6882	-0.0010277	-0.79428	-0.00048353	608.7673313528935	32.756	0.28957	32.756	32.659	32.949	0	1188	61	0.90571284	0.036750257	0.90571284	366.88544	0	14.88678						344	13	4	NaN	NaN	NaN	0.023828	1	16860	16860		67.154	40.423	1	43154			4750	5798	2776	2822	3748	3748					-0.07546553656311517
EYPAWFEQF	9	Unmodified	_EYPAWFEQF_					0	0	0		nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000198722|ENST00000635942|UNC13B	nc|ENSG00000198722|O14795|UNC13B	nc|ENSG00000198722|O14795|UNC13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.76911414365	2	608.769114	1215.52368	0.5529	0.00033659	0.18073	0.00011002	0.73363	0.00044661	608.7685374832919	32.73	0.26542	32.727	32.631	32.896	-0.0031052	1185	70	0.90755045	0.042269647	0.906031	367.6298	0	17.122559						275	12	4	NaN	NaN	NaN	0.02857	1	16191	16191		60.982	36.42	1	33221			4751	5798	2776	2822	3749	3749					-0.07546553656311517
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	1.6904	0.0010874	-4.379	-0.002817	-2.6887	-0.0017296	643.7954944039959	24.647	0.12062	24.647	24.574	24.695	0	1161	55	0.9222442	0.033035994	0.9222442	373.35638	0	13.374115						131	6	2	NaN	NaN	NaN	0.31689	1	18503	18503		27.046	14.998	1	35112			4752	5542;3078;6137	2777	2823	3750	3750					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	1.5702	0.0010101	-2.7239	-0.0017523	-1.1537	-0.00074217	643.296122480607	24.406	0.21715	24.406	24.237	24.454	0	1155	82	0.92591566	0.049556673	0.92591566	374.8427	0	20.062256						254	10	3	NaN	NaN	NaN	0.23201	1	18504	18504		32.778	18.353	1	37921			4753	5542;3078;6137	2777	2823	3751	3751					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	2.2056	0.0014188	-3.185	-0.0020489	-0.97946	-0.00063009	643.7971710800874	23.296	0.072306	23.296	23.248	23.32	0	1158	46	0.92408	0.027531445	0.92408	374.0996	0	11.145691						99	4	3	NaN	NaN	NaN	0.71559	1	18505	18505		6.9844	1.7955	1	8116			4754	5542;3078;6137	2777	2823	3752	3752					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	1.8407	0.0011841	1.3653	0.00087827	3.2059	0.0020624	643.2982537911616	24.816	0.16891	24.816	24.719	24.888	0	1158	88	0.92408	0.05318737	0.92408	374.09958	0	21.532104						346	8	2	NaN	NaN	NaN	0.31086	1	18507	18507		27.296	8.1326	1	51242			4755	5542;3078;6137	2777	2823	3753	3753					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2977127951	2	643.297713	1284.58087	2.947	0.0018958	0.31585	0.00020319	3.2628	0.002099	643.2981342467151	23.489	0.62664	23.489	23.345	23.971	0	1155	136	0.92591566	0.08263916	0.92591566	374.8427	0	33.45517						1792	27	7	NaN	NaN	NaN	2.1078E-08	1	18508	18508		129.85	84.02	1	2429600			4756	5542;3078;6137	2777	2823	3754	3754					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2977127951	2	643.297713	1284.58087	2.1228	0.0013656	-3.2191	-0.0020708	-1.0963	-0.00070525	643.2958803801105	23.995	0.14469	23.982	23.886	24.03	-0.013048	1158	70	0.92408	0.04220128	0.9225606	374.0996	0	17.084534						184	7	3	NaN	NaN	NaN	0.1802	1	17682	17682		37.231	14.113	1	26394			4757	5542;3078;6137	2777	2823	3755	3755					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2977127951	2	643.297713	1284.58087	1.9364	0.0012457	-2.8558	-0.0018371	-0.91937	-0.00059143	643.2956849080915	24.502	0.21716	24.489	24.344	24.561	-0.012747	1158	88	0.92408	0.053221762	0.9225606	374.0996	0	21.546051						264	10	3	NaN	NaN	NaN	0.0051241	1	17683	17683		77.516	51.401	1	45344			4758	5542;3078;6137	2777	2823	3756	3756					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2977127951	2	643.297713	1284.58087	1.9567	0.0012587	0.89056	0.00057289	2.8472	0.0018316	643.2973570655887	24.815	0.19302	24.803	24.779	24.972	-0.012394	1161	85	0.9222442	0.05136162	0.92072475	373.35638	0	20.792969						317	9	3	NaN	NaN	NaN	0.68732	1	17685	17685		8.9191	1.2365	1	33959			4759	5542;3078;6137	2777	2823	3757	3757					-0.050034544422260296
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2977127951	2	643.297713	1284.58087	3.5889	0.0023087	-0.47005	-0.00030238	3.1188	0.0020063	643.2977666803305	23.513	0.50638	23.5	23.331	23.837	-0.013294	1155	118	0.92591566	0.07160509	0.9243962	374.8427	0	28.98819						1669	22	7	NaN	NaN	NaN	9.6115E-09	1	17686	17686		136.21	88.208	1	2464900			4760	5542;3078;6137	2777	2823	3758	3758					-0.050034544422260296
EYPDRIMNTF	10	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	643.297713	1284.58087	1.7511	0.0011265	-2.9584	-0.0019032	-1.2073	-0.00077667	643.7975080604796	24.092	0.21718	24.092	23.995	24.213	0	1155	61	0.92591566	0.03669876	0.92591566	374.8427		14.856903	0.054862	0.00020118	0.0016775	NaN	37.231	318	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32136			4761	5542;3078;6137	2777	2823							-0.050034544422260296
EYPDRIMNTF	10	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	643.297713	1284.58087	1.5878	0.0010214	-2.3305	-0.0014992	-0.74268	-0.00047776	643.7975207346558	24.502	0.12054	24.502	24.43	24.55	0	1158	73	0.92408	0.044033706	0.92408	374.0996		17.826385	0.0064809	0.0004378	0.00075972	NaN	77.516	186	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31018			4762	5542;3078;6137	2777	2823							-0.050034544422260296
EYPDRIMNTF	10	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	643.297713	1284.58087	1.9179	0.0012338	-3.8157	-0.0024546	-1.8977	-0.0012208	643.7975003983207	24.695	0.1688	24.682	24.586	24.755	-0.012392	1158	91	0.92408	0.055030286	0.9225606	374.0996		22.278168	0.017833	0.00029099	0.00015819	NaN	27.046	409	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62160			4763	5542;3078;6137	2777	2823							-0.050034544422260296
EYPDRIMNTF	10	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	643.297713	1284.58087	2.0818	0.0013392	-2.5109	-0.0016153	-0.42915	-0.00027607	643.295824906436	24.092	0.072382	24.079	24.079	24.151	-0.012749	1155	49	0.92591566	0.029358983	0.9243962	374.8427		11.885529	-0.16335	0.00022425	-0.00075972	NaN	32.778	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13741			4764	5542;3078;6137	2777	2823							-0.050034544422260296
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(110)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.29517010615	2	651.29517	1300.57579	2.4133	0.0015718	0.99577	0.00064854	3.4091	0.0022203	651.29620022823	20.069	0.38451	20.069	19.924	20.309	0	1158	124	0.92408	0.075268984	0.92408	374.05063	0	30.46753						1433	17	7	NaN	NaN	NaN	0.0001021	1	18785	18785		109.78	54.192	1	2578700			4765	5542;3078;6137	2777	2824	3759	3759		348			-0.06247758304857598
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(72)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.29517010615	2	651.29517	1300.57579	0.86475	0.00056321	-5.9003	-0.0038428	-5.0355	-0.0032796	651.79130070037	21.2	0.096369	21.186	21.114	21.21	-0.014004	1161	52	0.9222442	0.031205654	0.92072475	373.30756	0	12.6315						149	5	3	NaN	NaN	NaN	0.0093647	1	17951	17951		72.076	55.218	1	21391			4766	5542;3078;6137	2777	2824	3760	3760		348			-0.06247758304857598
EYPDRIMNTF	10	Oxidation (M)	_EYPDRIM(Oxidation (M))NTF_		EYPDRIM(1)NTF		EYPDRIM(110)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.29517010615	2	651.29517	1300.57579	2.3303	0.0015177	1.0337	0.00067324	3.364	0.002191	651.296272320752	20.092	0.38506	20.078	19.958	20.343	-0.014141	1158	118	0.92408	0.07158959	0.9225606	374.05063	0	28.97815						1582	17	7	NaN	NaN	NaN	6.7994E-05	1	17955	17955		112.27	73.234	1	2628500			4767	5542;3078;6137	2777	2824	3761	3761		348			-0.06247758304857598
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.5455392524	1	1114.54554	1113.53826	1.9696	0.0021952	-0.11556	-0.00012879	1.8541	0.0020664	1114.545476534096	36.543	0.26503	36.543	36.495	36.76	0	69	82	1.5776473	0.047681093	1.5776473	319.86792	0	9.667328						533	12	5	NaN	NaN	NaN	2.9468E-07	1	13419	13419		130.62	83.483	1	91962			4768	523	2778	2825	3762	3762					-0.013964815081408233
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.5455392524	1	1114.54554	1113.53826	1.4754	0.0016444	0.55307	0.00061642	2.0285	0.0022608	1114.5463146341824	36.565	0.28888	36.567	36.494	36.783	0.0016747	66	82	1.579413	0.0476861	1.5778936	320.22592	0	9.6683655						525	13	4	NaN	NaN	NaN	0.00020136	1	13037	13037		116.74	48.628	1	90376			4769	523	2778	2825	3763	3763					-0.013964815081408233
EYPKEGTQI	9	Unmodified	_EYPKEGTQI_					0	0	0			REV__ZNF135|p.H544Q|1|0.21|ENSG00000176293|chr19:58068116-58068116|C/A|missense_variant	REV__ZNF135|p.H544Q|1|0.21|ENSG00000176293|chr19:58068116-58068116|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5258664428	1	1064.52587	1063.51859	1.4662	0.0015608	6.8133	0.0072529	8.2795	0.0088137	1064.5339118027457	33.045	0.24135	33.045	32.997	33.238	0	138	94	1.5369828	0.054878473	1.5369828	311.8026	0	11.133026						496	11	4	NaN	NaN	NaN	0.2345	1	11280	11280		23.118	2.5621	1	88076	+		4770	10831	2779	2826	3764	3764					-0.010628575189002731
EYPKEGTQI	9	Unmodified						0	0	0			REV__ZNF135|p.H544Q|1|0.21|ENSG00000176293|chr19:58068116-58068116|C/A|missense_variant	REV__ZNF135|p.H544Q|1|0.21|ENSG00000176293|chr19:58068116-58068116|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1064.52587	1063.51859	1.4662	0.0015608	6.8133	0.0072529	8.2795	0.0088137	1064.5339118027457	33.045	0.24135	33.045	32.997	33.238	0	138	94	1.5369828	0.054878473	1.5369828	311.8026		11.133026	0.001871	4.2187E-06	-0.00012532	NaN	23.118	496	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88076	+		4771	10831	2779	2826							-0.010628575189002731
EYPLEEEEEEE	11	Unmodified	_EYPLEEEEEEE_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:732324-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.7830093799001	2	712.783009	1423.55147	1.4379	0.0010249	5.3392	0.0038057	6.7771	0.0048306	712.7872331426869	25.298	0.14475	25.298	25.274	25.419	0	1032	40	1.0010062	0.023757875	1.0010062	404.82086	0	9.608032						140	7	4	NaN	NaN	NaN	0.69801	1	20238	20238		7.5876	2.3987	1	12274			4772	1624	2780	2827	3765	3765					-0.14336784768011057
EYPLEEEEEEE	11	Unmodified						0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:732324-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	712.783009	1423.55147	1.606	0.0011447	3.2562	0.002321	4.8622	0.0034657	712.7851034699426	25.298	0.1206	25.286	25.262	25.382	-0.012011	1032	40	1.0010062	0.023757875	0.99948686	404.82086		9.608032	-0.0061599	-0.001399	-0.00075972	NaN	7.5876	123	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11048			4773	1624	2780	2827							-0.14336784768011057
EYPMRGMVDPM	11	Unmodified	_EYPMRGMVDPM_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5|ARID1B	REV__nc|ENSG00000049618|Q8NFD5|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.5277429810333	3	442.527743	1324.5614	1.271	0.00056245	5.4035	0.0023912	6.6745	0.0029536	442.5299054374195	16.686	0.16799	16.686	16.638	16.806	0	1431	37	0.75620437	0.022244275	0.75620437	459.05545	0	13.5034485						162	8	3	NaN	NaN	NaN	0.74155	1	19167	19167		1.8502	0.16965	1	14955	+		4774	8490	2781	2828	3766	3766					-0.08789870048985904
EYPSVHVII	9	Unmodified	_EYPSVHVII_					0	0	0		ENST00000477859.1_1_7:20406589-20418951:+|nuORF;ENSG00000105855|ENST00000222573|ITGB8	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7898495857501	2	528.78985	1055.56515	1.0177	0.00053817	-3.3874	-0.0017912	-2.3696	-0.001253	528.7878335415478	24.767	0.096508	24.755	24.707	24.803	-0.012392	1299	46	0.8375814	0.027671635	0.83606195	339.8634	0	11.2282715						97	5	3	NaN	NaN	NaN	0.062836	1	10682	10682		41.46	23.68	1	10427			4775	1568	2782	2829	3767	3767					0.03958627103043
EYPSVHVII	9	Unmodified						0	0	0		ENST00000477859.1_1_7:20406589-20418951:+|nuORF;ENSG00000105855|ENST00000222573|ITGB8	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.78985	1055.56515	1.437	0.00075987	-4.785	-0.0025303	-3.348	-0.0017704	528.7874566413781	24.767	0.096523	24.767	24.719	24.816	0	1299	61	0.8375814	0.03688556	0.8375814	339.8634		14.966949	0.0062738	-0.0010479	0.00075972	NaN	41.46	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10157			4776	1568	2782	2829							0.03958627103043
EYPTIGQLI	9	Unmodified	_EYPTIGQLI_					0	0	0		ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion	ITGB6-RBMS1|7|fusion	ITGB6-RBMS1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5564382897	1	1033.55644	1032.54916	1.3911	0.0014378	-1.9039	-0.0019678	-0.51283	-0.00053004	1034.557573252333	30.511	0.14478	30.511	30.439	30.584	0	144	88	1.533442	0.0513705	1.533442	311.20383	0	10.4253845						178	7	3	NaN	NaN	NaN	0.31737	1	9888	9888		17.799	9.5542	1	14215			4777	2000	2783	2830	3768	3768					0.03418920866147346
EYPTIGQLI	9	Unmodified	_EYPTIGQLI_					0	0	0		ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion	ITGB6-RBMS1|7|fusion	ITGB6-RBMS1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5564382897	1	1033.55644	1032.54916	0.98445	0.0010175	-0.25643	-0.00026503	0.72802	0.00075245	1033.5560358213709	30.486	0.16888	30.48	30.432	30.601	-0.0057545	141	100	1.5352125	0.058456182	1.5336931	311.56314	0	11.863342						252	8	3	NaN	NaN	NaN	0.03618	1	9683	9683		52.78	12.626	1	18800			4778	2000	2783	2830	3769	3769					0.03418920866147346
EYQDAFLFNEL	11	Unmodified	_EYQDAFLFNEL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.8220749609001	2	694.822075	1387.6296	0.65709	0.00045656	-0.082814	-5.7541E-05	0.57428	0.00039902	695.3240559460949	33.528	0.14466	33.528	33.48	33.624	0	1059	52	0.98455137	0.031104922	0.98455137	398.26544	0	12.582397						140	7	3	NaN	NaN	NaN	0.71564	1	19957	19957		6.4299	2.5018	1	8906.7			4779	5299	2784	2831	3770	3770					-0.048712626014776106
EYQDAFLFNEL	11	Unmodified	_EYQDAFLFNEL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.8220749609001	2	694.822075	1387.6296	0.55362	0.00038467	-1.0861	-0.00075461	-0.53243	-0.00036995	695.323827571481	33.551	0.096558	33.549	33.501	33.597	-0.0018463	1062	55	0.9827221	0.032936394	0.98120266	397.52548	0	13.323273						90	5	2	NaN	NaN	NaN	0.56282	1	19025	19025		16.226	5.2607	1	6609.7			4780	5299	2784	2831	3771	3771					-0.048712626014776106
EYQEHWFYF	9	Unmodified	_EYQEHWFYF_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1;ADPRHL1|p.E225Q|1|0.07|ENSG00000153531|chr13:113425153-113425153|C/G|missense_variant;nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.7852955241	2	674.785296	1347.55604	1.1557	0.00077988	-2.5182	-0.0016993	-1.3625	-0.00091937	674.7852131529137	29.232	0.19304	29.232	29.184	29.377	0	1101	76	0.95892316	0.045811653	0.95892316	388.01224	0	18.536926						379	9	4	NaN	NaN	NaN	0.12104	1	19506	19506		44.638	30.213	1	38066			4781	3811	2785	2832	3772	3772					-0.10383766253312388
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8009455883	2	568.800946	1135.58734	2.2897	0.0013024	-1.7004	-0.00096722	0.58924	0.00033516	568.8000352250568	18.053	0.14388	18.053	18.005	18.149	0	1215	40	0.8891654	0.023907006	0.8891654	360.46692	0	9.691895						135	7	3	NaN	NaN	NaN	0.017076	1	14302	14302		75.698	25.383	1	37341			4782	3637	2786	2833	3773	3773					0.02496806780800398
EYQIKTNQL	9	Unmodified	_EYQIKTNQL_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000602574.5_1_10:22607528-22607842:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.8009455883	2	568.800946	1135.58734	1.8019	0.0010249	-1.3941	-0.00079294	0.40782	0.00023197	568.7998537460753	18.05	0.16804	18.036	18.012	18.18	-0.013786	1218	37	0.8873258	0.022069216	0.8858064	359.72113	0	8.946838						189	8	4	NaN	NaN	NaN	0.070055	1	13837	13837		40.154	12.365	1	41576			4783	3637	2786	2833	3774	3774					0.02496806780800398
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2667386302	2	543.266739	1084.51892	1.5955	0.00086679	2.2242	0.0012083	3.8197	0.0020751	543.2688086738834	15.822	0.23983	15.822	15.726	15.966	0	1266	49	0.85786515	0.029489279	0.85786515	347.97418	0	11.9617						164	11	3	NaN	NaN	NaN	0.089764	1	12160	12160		37.302	6.6922	1	20104			4784	5138	2787	2834	3775	3775					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2667386302	2	543.266739	1084.51892	2.0084	0.0010911	1.3252	0.00071995	3.3336	0.001811	543.266509656285	15.82	0.19158	15.807	15.735	15.927	-0.012611	1266	52	0.85786515	0.031330705	0.8563457	347.97418	0	12.708588						162	9	2	NaN	NaN	NaN	0.052553	1	11845	11845		45.827	20.866	1	26161			4785	5138	2787	2834	3776	3776					-0.019954377990416106
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.8138559983	2	613.813856	1225.61316	1.9122	0.0011738	-1.3752	-0.00084413	0.53701	0.00032962	613.8126678845795	27.929	0.41022	27.929	27.833	28.243	0	1143	124	0.9332562	0.075268984	0.9332562	378.00772	0	30.487091						1102	18	4	NaN	NaN	NaN	0.0021374	1	17127	17127		110.61	74.37	1	2027100			4786	630	2788	2835	3777	3777					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.8138559983	2	613.813856	1225.61316	0.92922	0.00057037	-2.9331	-0.0018004	-2.0039	-0.00123	613.8123210629709	28.918	0.362	28.909	28.765	29.127	-0.0083504	1149	112	0.92958635	0.06793296	0.9280669	376.5213	0	27.515686						601	16	2	NaN	NaN	NaN	0.14301	1	16440	16440		29.598	7.8273	1	172940			4787	630	2788	2835	3778	3778					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.8138559983	2	613.813856	1225.61316	1.6968	0.0010415	-2.7109	-0.001664	-1.0141	-0.0006225	613.8119980797572	27.952	0.48272	27.943	27.774	28.257	-0.009552	1143	115	0.9332562	0.06975776	0.93173677	378.00775	0	28.254822						1343	21	6	NaN	NaN	NaN	3.7692E-08	1	16442	16442		140.15	94.981	1	2208000			4788	630	2788	2835	3779	3779					0.009377010230764427
EYQKVWNLF	9	Unmodified						0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.813856	1225.61316	1.0787	0.00066214	-0.3164	-0.00019421	0.76233	0.00046793	613.8137025922715	28.918	0.19312	28.918	28.846	29.039	0	1152	88	0.92775106	0.053227544	0.92775106	375.77792		21.559387	0.0045493	0.0014813	-0.0001579	NaN	29.598	291	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98292			4789	630	2788	2835							0.009377010230764427
EYQKVWNLF	9	Unmodified						0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	613.813856	1225.61316	0.60741	0.00037284	-5.5745	-0.0034217	-4.9671	-0.0030489	614.3104584913734	28.29	0.096508	28.281	28.281	28.378	-0.0089779	1152	82	0.92775106	0.049556673	0.9262317	375.77795		20.07254	0.17613	-0.0048524	-0.0035123	NaN	110.61	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28295			4790	630	2788	2835							0.009377010230764427
EYQLIDCAQYF	11	Unmodified	_EYQLIDCAQYF_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.81065299485	2	696.810653	1391.60675	0.64738	0.0004511	7.0032	0.0048799	7.6505	0.005331	696.8174997161399	32.73	0.14476	32.727	32.727	32.872	-0.0031052	1080	100	0.9717421	0.060432255	0.97022265	393.07278	0	24.445068						311	7	3	NaN	NaN	NaN	0.26275	1	19059	19059		26.96	12.919	1	33244			4791	1010	2789	2836	3780	3780					-0.07338604990604836
EYREDFVL	8	Unmodified	_EYREDFVL_					0	0	0		nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000147862|O00712-2|NFIB;NFIB|p.L323Ffs*84|1|0.41|ENSG00000147862|chr9:14125722-14125723|AC/-|frameshift_variant;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-4|NFIB;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5153017564999	1	1070.5153	1069.50803	0.51034	0.00054632	-9.7405	-0.010427	-9.2302	-0.009881	1070.5049976312505	31.789	0.14486	31.785	31.712	31.857	-0.0044174	150	103	1.5299006	0.06021154	1.5283811	310.3437	0	12.21405						352	7	4	NaN	NaN	NaN	0.3042	1	11251	11251		41.785	12.186	1	49412			4792	4150	2790	2837	3781	3781					-0.023948401733377978
EYRPEFSNF	9	Unmodified	_EYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7696454599001	2	594.769645	1187.52474	0.89206	0.00053057	6.6435	0.0039514	7.5356	0.0044819	595.2757710372733	21.946	0.1445	21.932	21.884	22.028	-0.013895	1230	94	0.8799654	0.057002902	0.878446	356.55	0	23.096802						319	7	3	NaN	NaN	NaN	0.19268	1	15462	15462		25.801	12.798	1	33489			4793	1386	2791	2838	3782	3782					-0.06152339287382347
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5935520775	1	1092.59355	1091.58628	2.1933	0.0023963	-1.7491	-0.001911	0.44418	0.00048531	1092.591824860242	28.315	0.072369	28.315	28.291	28.363	0	75	61	1.5741152	0.035336137	1.5741152	319.2304	0	7.166168						99	4	2	NaN	NaN	NaN	0.026295	1	12476	12476		63.958	33.348	1	9459.1			4794	6089	2792	2839	3783	3783					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5935520775	1	1092.59355	1091.58628	1.2356	0.00135	-1.8624	-0.0020348	-0.62683	-0.00068487	1092.5914496360267	28.314	0.072372	28.305	28.281	28.354	-0.0089779	75	58	1.5741152	0.03356397	1.5725957	319.2304	0	6.8067627						94	4	2	NaN	NaN	NaN	0.012495	1	12157	12157		85.344	52.892	1	9133.3			4795	6089	2792	2839	3784	3784					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.80041427205	2	546.800414	1091.58628	1.0988	0.00060083	-0.18942	-0.00010357	0.9094	0.00049726	546.8003882627278	28.314	0.12063	28.305	28.281	28.402	-0.0089779	1224	52	0.883646	0.031273186	0.88212657	358.4025	0	12.684265						135	6	2	NaN	NaN	NaN	0.33629	1	12159	12159		16.584	2.1591	1	21425			4796	6089	2792	2839	3785	3785					0.04414592411899321
EYSIVIQQL	9	Unmodified						0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.800414	1091.58628	1.5246	0.00083367	-2.3564	-0.0012885	-0.83181	-0.00045483	546.7994400891697	28.315	0.096504	28.315	28.291	28.388	0	1224	43	0.883646	0.025761366	0.883646	358.4025		10.448669	0.0048553	-0.0010194	0.00075972	NaN	16.584	117	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18101			4797	6089	2792	2839							0.04414592411899321
EYSKPSPTL	9	Unmodified	_EYSKPSPTL_					0	0	0			REV__ENST00000480825.6_1_1:36931960-36932521:-|nuORF	REV__ENST00000480825.6_1_1:36931960-36932521:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.263664625	2	511.263665	1020.51278	1.7359	0.00088752	1.0471	0.00053534	2.783	0.0014229	511.2628862080942	18.458	0.21602	18.444	18.372	18.588	-0.01395	1305	88	0.83389086	0.053527474	0.8323714	338.5155	0	21.72931						245	10	2	NaN	NaN	NaN	0.19268	1	9197	9197		25.801	1.2389	1	38234	+		4798	9290	2793	2840	3786	3786					0.003340439694284214
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.1974905738333	3	406.197491	1215.57064	1.7295	0.00070253	-1.2969	-0.0005268	0.43262	0.00017573	406.1971454141254	13.901	0.07197	13.901	13.853	13.925	0	1461	31	0.7376554	0.018559039	0.7376554	448.20892	0	11.276703						75	4	2	NaN	NaN	NaN	0.036546	1	16868	16868		39.039	27.478	1	9276.1			4799	2083;5644	2794	2841	3787	3787					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.79259762745	2	608.792598	1215.57064	1.6337	0.00099461	-0.68101	-0.00041459	0.95273	0.00058001	608.7917816612126	13.877	0.16802	13.877	13.853	14.021	0	1164	34	0.9204082	0.020198464	0.9204082	372.83804	0	8.181976						141	8	3	NaN	NaN	NaN	0.055351	1	16869	16869		44.638	29.463	1	11497			4800	2083;5644	2794	2841	3788	3788					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.79259762745	2	608.792598	1215.57064	1.1324	0.00068938	-2.165	-0.001318	-1.0326	-0.00062863	608.7911442181264	13.925	0.14389	13.914	13.89	14.034	-0.010673	1167	34	0.91857195	0.020198464	0.9170525	372.09424	0	8.181976						103	7	3	NaN	NaN	NaN	0.019939	1	16198	16198		72.076	45.961	1	7305.8			4801	2083;5644	2794	2841	3789	3789					-0.028520173767901724
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.1974905738333	3	406.197491	1215.57064	1.3168	0.00053488	0.45467	0.00018469	1.7715	0.00071956	406.1978654409561	13.925	0.11986	13.914	13.866	13.986	-0.010673	1458	40	0.7395112	0.024122834	0.73799175	449.33655	0	14.657349						131	6	3	NaN	NaN	NaN	0.36492	1	16200	16200		13.463	7.0331	1	9904.5			4802	2083;5644	2794	2841	3790	3790					-0.028520173767901724
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.81405296355	2	638.814053	1275.61355	2.2181	0.001417	-2.0681	-0.0013211	0.15002	9.5837E-05	638.8123830274561	22.26	0.26532	22.26	22.163	22.429	0	1095	121	0.9625867	0.07335001	0.9625867	389.71756	0	29.696838						737	12	5	NaN	NaN	NaN	5.2862E-09	1	18335	18335		138.61	88.295	1	223170			4803	4166	2795	2842	3791	3791					-0.013229240477357962
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.81405296355	2	638.814053	1275.61355	1.9119	0.0012213	-2.7012	-0.0017256	-0.78932	-0.00050423	638.8122295554953	22.259	0.21669	22.246	22.222	22.438	-0.013731	1095	121	0.9625867	0.07335794	0.96106726	389.71756	0	29.700073						735	10	5	NaN	NaN	NaN	1.1692E-06	1	17519	17519		127.69	85.368	1	218010			4804	4166	2795	2842	3792	3792					-0.013229240477357962
EYSKYLQQAF	10	Unmodified						0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	638.814053	1275.61355	2.3264	0.0014861	-4.5498	-0.0029065	-2.2234	-0.0014203	639.3129312248304	22.476	0.072325	22.462	22.438	22.511	-0.013733	1098	40	0.960755	0.023816884	0.9592356	388.97598		9.642639	0.10126	-0.0027989	-0.0016756	NaN	138.61	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3369.7			4805	4166	2795	2842							-0.013229240477357962
EYSLFPGQVVI	11	Unmodified	_EYSLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.33462123015	2	626.334621	1250.65469	0.86564	0.00054218	-5.5477	-0.0034747	-4.6821	-0.0029325	626.3310931111503	33.431	0.19307	33.431	33.335	33.528	0	1146	58	0.93142134	0.034861922	0.93142134	377.18042	0	14.117401						227	9	4	NaN	NaN	NaN	0.022256	1	17787	17787		60.984	41.647	1	32861			4806	434	2796	2843	3793	3793					0.039388369917332966
EYSLFPGQVVI	11	Unmodified	_EYSLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.33462123015	2	626.334621	1250.65469	0.35907	0.0002249	-4.8881	-0.0030616	-4.529	-0.0028367	626.3318050165844	33.43	0.1689	33.428	33.332	33.501	-0.0018501	1143	52	0.9332562	0.031188905	0.93173677	377.92343	0	12.629974						211	8	4	NaN	NaN	NaN	0.01271	1	17035	17035		66.656	39.36	1	32168			4807	434	2796	2843	3794	3794					0.039388369917332966
EYSNCNYKVDC	11	Unmodified	_EYSNCNYKVDC_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.26047000905	2	669.26047	1336.50639	2.039	0.0013646	-5.5109	-0.0036882	-3.4719	-0.0023236	669.7580870098299	23.537	0.096539	23.524	23.428	23.524	-0.01305	1125	46	0.9442611	0.027507722	0.94274163	382.11154	0	11.13147						58	5	2	NaN	NaN	NaN	0.69801	1	18480	18480		7.5876	1.3374	1	7793.1			4808	4599	2797	2844	3795	3795					-0.14840585315914723
EYSRPTLEVS	10	Unmodified	_EYSRPTLEVS_					0	0	0		BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant;nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.7958602104001	2	590.79586	1179.57717	0.88343	0.00052192	8.8561	0.0052322	9.7396	0.0057541	591.3028476042689	28.097	0.26552	28.088	27.968	28.233	-0.0089798	1170	94	0.91673553	0.05694753	0.9152161	371.47748	0	23.076172						364	12	2	NaN	NaN	NaN	0.60686	1	15230	15230		14.425	2.3763	1	64921			4809	65	2798	2845	3796	3796					-0.005438009444333147
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.4785818991998	1	1121.47858	1120.47131	1.9944	0.0022367	0.76687	0.00086003	2.7613	0.0030967	1121.4787368834702	30.487	0.26546	30.487	30.439	30.704	0	78	124	1.5723488	0.07249665	1.5723488	318.7695	0	14.697571						689	12	4	NaN	NaN	NaN	0.012018	1	13687	13687		86.792	44.475	1	89075			4810	3097	2799	2846	3797	3797					-0.08411136789914053
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1121.4785818991998	1	1121.47858	1120.47131	1.2483	0.0013999	1.6688	0.0018716	2.9171	0.0032715	1121.479368708567	30.486	0.24129	30.48	30.432	30.673	-0.0057545	78	130	1.5723488	0.076033115	1.5708294	318.7695	0	15.414551						625	11	4	NaN	NaN	NaN	5.8423E-12	1	13286	13286		148.45	93.038	1	87043			4811	3097	2799	2846	3798	3798					-0.08411136789914053
EYSVNIRYLLF	11	Unmodified	_EYSVNIRYLLF_					0	0	0		ENST00000606965.5_1_6:158535743-158540110:-|nuORF;ENST00000607742.5_1_6:158532400-158537340:-|nuORF;ENSG00000122335|ENST00000647468|SERAC1	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.87972722555	2	708.879727	1415.7449	0.51841	0.00036749	-0.60803	-0.00043102	-0.089621	-6.353E-05	708.8795795674048	31.621	0.096535	31.621	31.597	31.694	0	1056	43	0.9863805	0.025600612	0.9863805	398.92715	0	10.35379						106	5	3	NaN	NaN	NaN	0.40559	1	20192	20192		21.85	11.49	1	8981.8			4812	2319	2800	2847	3799	3799					0.05365886320169011
EYSVNIRYLLF	11	Unmodified	_EYSVNIRYLLF_					0	0	0		ENST00000606965.5_1_6:158535743-158540110:-|nuORF;ENST00000607742.5_1_6:158532400-158537340:-|nuORF;ENSG00000122335|ENST00000647468|SERAC1	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.87972722555	2	708.879727	1415.7449	0.3974	0.00028171	-0.6985	-0.00049515	-0.30109	-0.00021344	708.8789155021649	31.669	0.096525	31.664	31.616	31.712	-0.0044155	1053	52	0.9882094	0.03107816	0.98669	399.66684	0	12.569092						120	5	3	NaN	NaN	NaN	0.00011547	1	19233	19233		86.17	69.586	1	9745.8			4813	2319	2800	2847	3800	3800					0.05365886320169011
EYSWNWNAI	9	Unmodified	_EYSWNWNAI_					0	0	0		ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.76436311675	2	591.764363	1181.51417	1.1269	0.00066684	1.4879	0.00088048	2.6148	0.0015473	591.7642183698548	30.608	0.24134	30.608	30.56	30.801	0	1185	79	0.90755045	0.047790825	0.90755045	367.74857	0	19.365326						336	11	4	NaN	NaN	NaN	0.16171	1	15865	15865		27.789	11.205	1	48786			4814	292	2801	2848	3801	3801					-0.06932321941826558
EYSWNWNAI	9	Unmodified	_EYSWNWNAI_					0	0	0		ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	ENSG00000001036|ENST00000002165|FUCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.76436311675	2	591.764363	1181.51417	0.76361	0.00045188	0.72814	0.00043089	1.4917	0.00088276	591.7641273663451	30.607	0.21712	30.601	30.553	30.77	-0.0057545	1182	52	0.9093879	0.031235993	0.90786844	368.4931	0	12.657166						250	10	2	NaN	NaN	NaN	0.04947	1	15280	15280		47.136	21.021	1	49151			4815	292	2801	2848	3802	3802					-0.06932321941826558
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	2.0688	0.0021135	-1.8273	-0.0018668	0.24148	0.0002467	1021.5901055888507	24.406	0.048258	24.406	24.381	24.43	0	132	49	1.5405227	0.028313756	1.5405227	312.68912	0	5.7470093						69	3	2	NaN	NaN	NaN	0.030696	1	9408	9408		58.2	22.903	1	6741.8			4816	1100	2802	2849	3803	3803					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.3000501313	2	511.30005	1020.58555	1.7299	0.00088451	-1.0659	-0.00054498	0.66406	0.00033953	511.29985873019274	24.406	0.14473	24.406	24.357	24.502	0	1266	67	0.85786515	0.0405522	0.85786515	348.2475	0	16.462006						286	7	4	NaN	NaN	NaN	0.0021374	1	9409	9409		110.61	68.288	1	131750			4817	1100	2802	2849	3804	3804					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.3000501313	2	511.30005	1020.58555	1.2996	0.00066449	-0.28133	-0.00014384	1.0183	0.00052064	511.3000535060719	24.405	0.14487	24.393	24.368	24.513	-0.012747	1266	70	0.85786515	0.042393148	0.8563457	348.2475	0	17.20935						276	7	5	NaN	NaN	NaN	0.013696	1	9218	9218		81.699	39.382	1	121500			4818	1100	2802	2849	3805	3805					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5928237960001	1	1021.59282	1020.58555	1.9392	0.0019811	-0.75491	-0.00077121	1.1843	0.0012099	1021.5906590181544	24.405	0.048265	24.393	24.393	24.441	-0.012747	129	40	1.5422925	0.023003817	1.540773	313.04834	0	4.66922						64	3	2	NaN	NaN	NaN	0.054111	1	9219	9219		45.165	16.269	1	5793.6			4819	1100	2802	2849	3806	3806					0.07607797762852897
EYTDDIPLL	9	Unmodified	_EYTDDIPLL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5302831187	1	1078.53028	1077.52301	0.62879	0.00067816	-1.8588	-0.0020048	-1.23	-0.0013266	1078.5281965155737	31.235	0.096527	31.235	31.187	31.284	0	111	79	1.5529068	0.04596615	1.5529068	314.98065	0	9.323456						192	5	3	NaN	NaN	NaN	0.023074	1	11858	11858		68.108	41.377	1	17593			4820	1268	2803	2850	3807	3807					-0.01265393095991385
EYTDDIPLL	9	Unmodified	_EYTDDIPLL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5302831187	1	1078.53028	1077.52301	1.4303	0.0015427	-2.7892	-0.0030083	-1.3589	-0.0014656	1078.5289168629063	31.234	0.14481	31.229	31.157	31.302	-0.0050716	111	85	1.5529068	0.049502015	1.5513873	314.98065	0	10.040649						237	7	3	NaN	NaN	NaN	0.078597	1	11547	11547		38.918	12.186	1	21634			4821	1268	2803	2850	3808	3808					-0.01265393095991385
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1128.5095476765998	1	1128.50955	1127.50227	2.7567	0.003111	-2.8794	-0.0032494	-0.12269	-0.00013846	1128.5055856382573	25.95	0.2896	25.95	25.877	26.167	0	75	82	1.5741152	0.04770124	1.5741152	319.1034	0	9.669983						492	13	3	NaN	NaN	NaN	0.014046	1	13989	13989		80.639	60.083	1	78380			4822	1373	2804	2851	3809	3809					-0.056379834756626224
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1128.5095476765998	1	1128.50955	1127.50227	2.0477	0.0023109	-1.5889	-0.0017931	0.45879	0.00051775	1128.5071847305778	25.949	0.24136	25.938	25.865	26.107	-0.0116	75	100	1.5741152	0.058307767	1.5725957	319.10336	0	11.820099						551	11	4	NaN	NaN	NaN	0.036546	1	13545	13545		52.624	27.663	1	80179			4823	1373	2804	2851	3810	3810					-0.056379834756626224
EYTPRSWNF	9	Unmodified	_EYTPRSWNF_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2776376675	2	600.277638	1198.54072	1.4765	0.00088629	-1.9769	-0.0011867	-0.50045	-0.00030041	600.2765059826518	22.453	0.16863	22.453	22.356	22.525	0	1194	76	0.902037	0.045935333	0.902037	365.45456	0	18.610413						276	8	3	NaN	NaN	NaN	0.022082	1	16415	16415		69.363	27.579	1	45730			4824	3926	2805	2852	3811	3811					-0.050606330504933794
EYTPRSWNF	9	Unmodified	_EYTPRSWNF_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.2776376675	2	600.277638	1198.54072	0.91996	0.00055223	-1.3705	-0.00082271	-0.45059	-0.00027048	600.277334585091	22.476	0.14463	22.462	22.414	22.559	-0.013733	1191	73	0.90387505	0.044100344	0.9023556	366.19922	0	17.866974						340	7	4	NaN	NaN	NaN	0.028569	1	15770	15770		60.984	27.558	1	52720			4825	3926	2805	2852	3812	3812					-0.050606330504933794
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3187742007001	2	563.318774	1124.623	2.2153	0.0012479	7.5204	0.0042364	9.7357	0.0054843	563.322995134425	29.184	0.45853	29.184	29.087	29.546	0	1200	91	0.89836043	0.055149198	0.89836043	364.2371	0	22.360046						1044	20	6	NaN	NaN	NaN	0.041983	1	13879	13879		50.315	3.2749	1	814830			4826	2618	2806	2853	3813	3813					0.06566889028476908
EYTRALFLL	9	Unmodified						0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.318774	1124.623	1.8616	0.0010487	8.2227	0.004632	10.084	0.0056807	563.3234118995547	29.207	0.43439	29.2	29.055	29.489	-0.0077209	1197	82	0.9001988	0.04962623	0.8986794	364.98248		20.120789	0.0078224	0.00035316	0.00015948	NaN	50.315	1105	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813980			4827	2618	2806	2853							0.06566889028476908
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7951319289001	2	561.795132	1121.57571	1.5696	0.00088181	-0.68074	-0.00038244	0.8889	0.00049938	561.7954512079021	30.415	0.096512	30.415	30.391	30.487	0	1212	55	0.8910048	0.033100247	0.8910048	361.26672	0	13.420837						167	5	4	NaN	NaN	NaN	0.14945	1	13750	13750		28.667	17.496	1	22603			4828	5809	2807	2854	3814	3814					0.019786097574751693
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7951319289001	2	561.795132	1121.57571	0.9792	0.00055011	-0.67659	-0.0003801	0.30261	0.00017	561.7956558171102	30.414	0.16893	30.407	30.359	30.528	-0.0064106	1209	55	0.892844	0.03309667	0.8913246	362.01245	0	13.419403						221	8	4	NaN	NaN	NaN	0.062836	1	13344	13344		41.46	12.794	1	28608			4829	5809	2807	2854	3815	3815					0.019786097574751693
EYTVQQALF	9	Unmodified	_EYTVQQALF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.77693917575	2	549.776939	1097.53933	1.1745	0.0006457	3.3039	0.0018164	4.4784	0.0024621	549.779649693252	27.495	0.096554	27.495	27.471	27.567	0	1257	55	0.86339295	0.033157587	0.86339295	350.16425	0	13.447632						152	5	3	NaN	NaN	NaN	0.10363	1	12744	12744		35.296	17.498	1	21237			4830	468	2808	2855	3816	3816					-0.005542671392504417
EYTVQQALF	9	Unmodified	_EYTVQQALF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.77693917575	2	549.776939	1097.53933	1.1352	0.00062408	0.61013	0.00033544	1.7453	0.00095952	550.2780813361892	27.494	0.048243	27.484	27.46	27.508	-0.009552	1257	49	0.86339295	0.029470205	0.8618735	350.16428	0	11.952148						71	3	3	NaN	NaN	NaN	0.48181	1	12410	12410		10.36	3.3758	1	11123			4831	468	2808	2855	3817	3817					-0.005542671392504417
EYTVQQALF	9	Unmodified	_EYTVQQALF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.77693917575	2	549.776939	1097.53933	1.2819	0.00070477	7.3172	0.0040228	8.5991	0.0047276	549.7815574571287	27.542	0.024151	27.533	27.533	27.557	-0.0095501	1251	73	0.8670771	0.044186175	0.8655577	351.65842	0	17.920502						52	2	2	NaN	NaN	NaN	0.12328	1	12413	12413		32.453	17.277	1	7086.2			4832	468	2808	2855	3818	3818					-0.005542671392504417
EYVDDTQFLRF	11	Unmodified	_EYVDDTQFLRF_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.8407990302999	2	716.840799	1431.66705	1.651	0.0011835	-1.9241	-0.0013793	-0.27304	-0.00019573	716.8393571160498	28.05	0.21718	28.05	28.001	28.219	0	1065	73	0.9808926	0.04389155	0.9808926	396.66498	0	17.74939						455	10	5	NaN	NaN	NaN	3.8635E-29	1	20283	20283		165.13	122.14	1	101480			4833	5902	2809	2856	3819	3819					-0.03152171335887033
EYVDDTQFLRF	11	Unmodified	_EYVDDTQFLRF_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.8407990302999	2	716.840799	1431.66705	1.0891	0.00078071	-1.8067	-0.0012951	-0.71765	-0.00051444	716.8391927957564	28.049	0.24138	28.04	27.992	28.233	-0.0089779	1065	70	0.9808926	0.042065024	0.97937316	396.66498	0	17.010742						483	11	5	NaN	NaN	NaN	0.00024841	1	19321	19321		80.241	58.469	1	100030			4834	5902	2809	2856	3820	3820					-0.03152171335887033
EYVEHTVKE	9	Unmodified	_EYVEHTVKE_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2773033165	2	567.277303	1132.54005	1.9058	0.0010811	2.6491	0.0015028	4.5549	0.0025839	567.2786787050657	37.864	0.096157	37.868	37.844	37.94	0.0034256	1233	28	0.87812483	0.016565382	0.8766054	356.00253	0	6.71579						61	5	2	NaN	NaN	NaN	0.49672	1	13725	13725		9.746	2.2056	1	3435.1			4835	2509	2810	2857	3821	3821					-0.020914724902013404
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.2204010712333	3	416.220401	1245.63937	1.8531	0.00077128	-1.8365	-0.0007644	0.016525	6.8779E-06	416.21962150058556	20.237	0.21634	20.237	20.189	20.405	0	1413	61	0.7673241	0.037057757	0.7673241	466.10986	0	22.51065						402	10	5	NaN	NaN	NaN	0.024359	1	17658	17658		66.481	39.185	1	220750			4836	1918	2811	2858	3822	3822					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.82696337355	2	623.826963	1245.63937	1.4384	0.00089734	-1.4254	-0.00088921	0.013021	8.123E-06	623.8265649784524	20.285	0.26482	20.271	20.198	20.463	-0.014141	1143	91	0.9332562	0.055048108	0.93173677	377.94003	0	22.292816						354	12	3	NaN	NaN	NaN	0.00015454	1	16917	16917		146.99	77.624	1	279960			4837	1918	2811	2858	3823	3823					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.2204010712333	3	416.220401	1245.63937	1.5343	0.00063861	-1.3788	-0.00057387	0.15554	6.474E-05	416.21971819622934	20.285	0.31287	20.271	20.222	20.535	-0.014141	1413	61	0.7673241	0.037053704	0.76580465	466.10986	0	22.50821						433	14	4	NaN	NaN	NaN	0.030545	1	16918	16918		58.398	36.547	1	205780			4838	1918	2811	2858	3824	3824					0.02637970194564332
EYVKQTWNL	9	Unmodified	_EYVKQTWNL_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8034882772502	2	590.803488	1179.59242	1.4255	0.00084221	-1.8826	-0.0011122	-0.45702	-0.00027001	590.8026084651417	21.416	0.16865	21.416	21.368	21.537	0	1125	43	0.9442611	0.025669754	0.9442611	382.6313	0	10.401825						178	8	4	NaN	NaN	NaN	0.060816	1	15814	15814		42.318	23.033	1	22729			4839	4369	2812	2859	3825	3825					0.00981110643442662
EYVKQTWNL	9	Unmodified	_EYVKQTWNL_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8034882772502	2	590.803488	1179.59242	1.141	0.00067413	-0.94099	-0.00055594	0.20006	0.00011819	590.803326256998	21.416	0.12042	21.402	21.378	21.499	-0.014004	1125	43	0.9442611	0.025672436	0.94274163	382.6313	0	10.402954						148	6	3	NaN	NaN	NaN	0.024359	1	15231	15231		66.481	32.027	1	20761			4840	4369	2812	2859	3826	3826					0.00981110643442662
EYVNDFDL	8	Unmodified	_EYVNDFDL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA;ENSG00000204103|ENST00000373313|MAFB	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA;ENSG00000204103|ENST00000373313|MAFB	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4414681114	1	1014.44147	1013.43419	1.7332	0.0017583	-1.3441	-0.0013636	0.3891	0.00039471	1014.4398202071969	26.891	0.16886	26.891	26.867	27.036	0	219	64	1.4891195	0.037282348	1.4891195	302.28394	0	7.5681458						183	8	2	NaN	NaN	NaN	0.42133	1	9103	9103		35.296	2.8437	1	24933			4841	5114;5280;5862	2813	2860	3827	3827					-0.07198808335658669
EYVNDFDL	8	Unmodified	_EYVNDFDL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA;ENSG00000204103|ENST00000373313|MAFB	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA;ENSG00000204103|ENST00000373313|MAFB	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4414681114	1	1014.44147	1013.43419	1.4577	0.0014787	-0.5937	-0.00060227	0.86398	0.00087646	1014.4405248435246	26.915	0.16896	26.904	26.856	27.025	-0.010645	219	70	1.4891195	0.040832996	1.4876001	302.28394	0	8.28891						187	8	3	NaN	NaN	NaN	0.22524	1	8926	8926		48.002	23.44	1	22425			4842	5114;5280;5862	2813	2860	3828	3828					-0.07198808335658669
EYVNDFDLLKF	11	Unmodified	_EYVNDFDLLKF_					0	0	0		ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.84809274615	2	701.848093	1401.68163	0.56933	0.00039958	-2.2865	-0.0016048	-1.7172	-0.0012052	701.8464504879088	31.211	0.24133	31.211	31.163	31.404	0	1059	58	0.98455137	0.03475678	0.98455137	398.22607	0	14.058258						384	11	5	NaN	NaN	NaN	3.6641E-07	1	20075	20075		112.27	86.158	1	116390			4843	5862	2814	2861	3829	3829					-0.0031409918772169476
EYVNDFDLLKF	11	Unmodified	_EYVNDFDLLKF_					0	0	0		ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.84809274615	2	701.848093	1401.68163	0.83047	0.00058286	-2.0586	-0.0014449	-1.2282	-0.000862	701.8463594546471	31.234	0.14483	31.229	31.181	31.326	-0.0050716	1056	64	0.9863805	0.038415432	0.9848611	398.96588	0	15.538086						371	7	5	NaN	NaN	NaN	0.0024971	1	19132	19132		103.01	76.894	1	119750			4844	5862	2814	2861	3830	3830					-0.0031409918772169476
EYVNDFDLMKF	11	Unmodified	_EYVNDFDLMKF_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.8263030590499	2	710.826303	1419.63805	1.173	0.00083378	-1.2687	-0.00090185	-0.095766	-6.8073E-05	710.8254450654513	30.366	0.12065	30.366	30.27	30.391	0	1056	43	0.9863805	0.025606155	0.9863805	398.9166	0	10.355743						122	6	3	NaN	NaN	NaN	0.05951	1	20217	20217		47.424	26.911	1	15176			4845	5114;5280	2815	2862	3831	3831					-0.05498031956540217
EYVNDFDLMKF	11	Unmodified	_EYVNDFDLMKF_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.8263030590499	2	710.826303	1419.63805	1.7225	0.0012244	-0.90635	-0.00064426	0.81611	0.00058011	710.8262423867212	29.57	0.38618	29.57	29.449	29.836	0	1056	91	0.9863805	0.05488223	0.9863805	398.9166	0	22.19571						1102	17	6	NaN	NaN	NaN	2.7610000000000002E-45	1	20218	20218		181.87	144.57	1	740360			4846	5114;5280	2815	2862	3832	3832					-0.05498031956540217
EYVNDFDLMKF	11	Unmodified	_EYVNDFDLMKF_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.8263030590499	2	710.826303	1419.63805	0.85218	0.00060575	-4.0374	-0.0028699	-3.1852	-0.0022641	710.8250405096264	30.703	0.16887	30.698	30.649	30.818	-0.0057564	1053	64	0.9882094	0.038423777	0.98669	399.65625	0	15.53952						197	8	3	NaN	NaN	NaN	0.58035	1	19253	19253		15.311	8.881	1	16440			4847	5114;5280	2815	2862	3833	3833					-0.05498031956540217
EYVNDFDLMKF	11	Unmodified	_EYVNDFDLMKF_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.8263030590499	2	710.826303	1419.63805	1.5803	0.0011233	-0.15659	-0.00011131	1.4237	0.001012	710.8268677678581	29.593	0.48256	29.586	29.345	29.828	-0.0070667	1053	97	0.9882094	0.05854094	0.98669	399.65625	0	23.675415						1067	21	7	NaN	NaN	NaN	5.5706E-36	1	19254	19254		168.64	128.49	1	726440			4848	5114;5280	2815	2862	3834	3834					-0.05498031956540217
EYVNDFDLMKF	11	Oxidation (M)	_EYVNDFDLM(Oxidation (M))KF_		EYVNDFDLM(1)KF		EYVNDFDLM(88)KF	0	0	1		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.8237603700999	2	718.82376	1435.63297	1.2898	0.00092717	-4.6517	-0.0033438	-3.3619	-0.0024166	718.8222347774686	26.819	0.36252	26.819	26.529	26.891	0	1056	46	0.9863805	0.027436674	0.9863805	398.87372	0	11.094849						452	16	4	NaN	NaN	NaN	6.4878E-05	1	20302	20302		88.426	65.309	1	62537			4849	5114;5280	2815	2863	3835	3835		536			-0.06742335819149048
EYVNDFDLMKF	11	Oxidation (M)	_EYVNDFDLM(Oxidation (M))KF_		EYVNDFDLM(1)KF		EYVNDFDLM(64)KF	0	0	1		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.8237603700999	2	718.82376	1435.63297	1.0038	0.00072155	-7.2409	-0.0052049	-6.2371	-0.0044833	719.3201738095145	26.842	0.24133	26.832	26.687	26.928	-0.010645	1056	58	0.9863805	0.034753084	0.9848611	398.87372	0	14.053497						356	11	5	NaN	NaN	NaN	0.016347	1	19338	19338		64.375	43.861	1	36353			4850	5114;5280	2815	2863	3836	3836		536			-0.06742335819149048
EYVNDFDLMKF	11	Oxidation (M)	_EYVNDFDLM(Oxidation (M))KF_		EYVNDFDLM(1)KF		EYVNDFDLM(160)KF	0	0	1		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF;ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF;ENSG00000182759|ENST00000333480|MAFA	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.8237603700999	2	718.82376	1435.63297	2.8096	0.0020196	-0.18674	-0.00013423	2.6229	0.0018854	718.8242126151955	25.829	0.36204	25.817	25.769	26.131	-0.011602	1056	103	0.9863805	0.062206447	0.9848611	398.8737	0	25.155151						1114	16	7	NaN	NaN	NaN	2.799E-28	1	19341	19341		155.56	110.92	1	1124000			4851	5114;5280	2815	2863	3837	3837		536			-0.06742335819149048
EYVRLVTEF	9	Unmodified	_EYVRLVTEF_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3058637907001	2	578.305864	1154.59717	1.8447	0.0010668	-1.0964	-0.00063407	0.74823	0.00043271	578.304921260083	25.081	0.12063	25.081	25.057	25.178	0	1182	52	0.9093879	0.031232655	0.9093879	368.59225	0	12.65921						165	6	4	NaN	NaN	NaN	0.061945	1	14977	14977		41.839	22.675	1	40609			4852	3304	2816	2864	3838	3838					0.02605994786199517
EYVRLVTEF	9	Unmodified	_EYVRLVTEF_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3058637907001	2	578.305864	1154.59717	1.5327	0.00088636	-0.762	-0.00044067	0.77069	0.00044569	578.3055550313329	25.081	0.096491	25.069	25.045	25.141	-0.012011	1185	52	0.90755045	0.031232655	0.906031	367.8475	0	12.65921						158	5	3	NaN	NaN	NaN	0.077759	1	14481	14481		39.039	18.59	1	37393			4853	3304	2816	2864	3839	3839					0.02605994786199517
EYVRLYVN	8	Unmodified	_EYVRLYVN_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1;ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2796490402001	2	528.279649	1054.54475	1.4039	0.00074167	3.4778	0.0018373	4.8818	0.0025789	528.2823123997972	24.381	0.36194	24.368	24.296	24.658	-0.012749	1257	157	0.86339295	0.09594411	0.8618735	350.34122	0	38.931488						1015	16	3	NaN	NaN	NaN	0.69898	1	10617	10617		19.118	1.3193	1	240470			4854	5802	2817	2865	3840	3840					0.0196545644323578
EYVRTLYDF	9	Unmodified	_EYVRTLYDF_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.2954960696501	2	603.295496	1204.57644	1.098	0.00066245	-0.77633	-0.00046836	0.32172	0.00019409	603.2952717173395	24.478	0.1688	24.478	24.381	24.55	0	1149	88	0.92958635	0.053256273	0.92958635	376.5945	0	21.575226						302	8	4	NaN	NaN	NaN	0.022082	1	16599	16599		69.363	44.801	1	45525			4855	1172	2818	2866	3841	3841					-0.017665955934717203
EYVRVSEHF	9	Unmodified	_EYVRVSEHF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.1927339552667	3	389.192734	1164.55637	1.7665	0.0006875	-3.4331	-0.0013361	-1.6666	-0.00064862	389.19053387759226	17.189	0.048	17.189	17.189	17.237	0	1431	34	0.75620437	0.020393908	0.75620437	459.70505	0	12.397675						40	3	2	NaN	NaN	NaN	0.63698	1	15295	15295		2.1026	0.40409	1	3079.8			4856	1576	2819	2867	3842	3842					-0.01932346533430973
EYVRVSEHF	9	Unmodified	_EYVRVSEHF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.2854626996001	2	583.285463	1164.55637	2.0749	0.0012103	-2.1184	-0.0012356	-0.043502	-2.5374E-05	583.2847612362281	17.213	0.095968	17.213	17.189	17.285	0	1179	37	0.9112251	0.022045374	0.9112251	369.29962	0	8.934509						119	5	3	NaN	NaN	NaN	0.03533	1	15296	15296		53.14	30.023	1	13925			4857	1576	2819	2867	3843	3843					-0.01932346533430973
EYVRVSEHF	9	Unmodified	_EYVRVSEHF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2854626996001	2	583.285463	1164.55637	1.8378	0.001072	-1.2664	-0.00073868	0.57138	0.00033328	583.2846423912297	17.258	0.11997	17.244	17.22	17.34	-0.013567	1179	55	0.9112251	0.033071637	0.90970564	369.29962	0	13.403229						147	6	3	NaN	NaN	NaN	0.03533	1	14768	14768		53.14	26.409	1	16199			4858	1576	2819	2867	3844	3844					-0.01932346533430973
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2849313833501	2	561.284931	1120.55531	2.1661	0.0012158	-3.1941	-0.0017928	-1.028	-0.00057703	561.2830680767661	23.248	0.16871	23.248	23.152	23.32	0	1233	67	0.87812483	0.040486515	0.87812483	356.04834	0	16.415833						263	8	4	NaN	NaN	NaN	0.084037	1	13704	13704		38.131	17.682	1	62301			4859	2573	2820	2868	3845	3845					-0.00014560902332050318
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2849313833501	2	561.284931	1120.55531	1.7947	0.0010073	-4.0007	-0.0022455	-2.206	-0.0012382	561.2826758187337	23.272	0.12063	23.258	23.21	23.331	-0.013294	1233	73	0.87812483	0.0441671	0.8766054	356.04837	0	17.908173						259	6	4	NaN	NaN	NaN	0.059222	1	13300	13300		42.995	20.868	1	61564			4860	2573	2820	2868	3846	3846					-0.00014560902332050318
EYVVRTFTL	9	Unmodified	_EYVVRTFTL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3084064796501	2	564.308406	1126.60226	1.9836	0.0011194	-3.2349	-0.0018255	-1.2513	-0.0007061	564.3066809318505	24.816	0.16893	24.816	24.767	24.936	0	1197	91	0.9001988	0.0551731	0.9001988	364.97476	0	22.369232						298	8	3	NaN	NaN	NaN	0.0050453	1	13972	13972		102.5	59.501	1	121840			4861	3792	2821	2869	3847	3847					0.04402298648801661
EYVVRTFTL	9	Unmodified	_EYVVRTFTL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3084064796501	2	564.308406	1126.60226	1.4524	0.00081961	-2.2203	-0.0012529	-0.76785	-0.0004333	564.3072058299454	24.815	0.16888	24.803	24.755	24.924	-0.012394	1197	76	0.9001988	0.045980036	0.8986794	364.97476	0	18.642029						305	8	3	NaN	NaN	NaN	0.0080618	1	13527	13527		96.341	52.039	1	114640			4862	3792	2821	2869	3848	3848					0.04402298648801661
EYYDKAFDRI	10	Unmodified	_EYYDKAFDRI_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5470653510333	3	440.547065	1318.61937	1.2578	0.00055414	-1.2092	-0.00053273	0.048604	2.1412E-05	440.5463084299756	19.997	0.14422	19.997	19.948	20.093	0	1407	40	0.77102906	0.02407837	0.77102906	468.0766	0	14.617523						139	7	3	NaN	NaN	NaN	0.55649	1	19092	19092		17.112	2.1525	1	18639			4863	1235	2822	2870	3849	3849					-0.027198255360644907
EYYDKAFDRI	10	Unmodified	_EYYDKAFDRI_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.31695979325	2	660.31696	1318.61937	1.6327	0.0010781	-1.0818	-0.00071434	0.55092	0.00036378	660.3158706130718	19.997	0.16827	19.997	19.924	20.093	0	1125	43	0.9442611	0.025672436	0.9442611	382.16458	0	10.390259						201	8	4	NaN	NaN	NaN	0.68608	1	19093	19093		10.965	5.7762	1	29902			4864	1235	2822	2870	3850	3850					-0.027198255360644907
EYYDKAFDRI	10	Unmodified	_EYYDKAFDRI_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.31695979325	2	660.31696	1318.61937	1.6166	0.0010675	-1.1356	-0.00074983	0.48108	0.00031767	660.3162905621898	20.02	0.096294	20.006	19.982	20.078	-0.014141	1125	43	0.9442611	0.025672436	0.94274163	382.16458	0	10.390259						159	5	4	NaN	NaN	NaN	0.60261	1	18242	18242		17.582	7.2216	1	24418			4865	1235	2822	2870	3851	3851					-0.027198255360644907
EYYDKAFDRI	10	Unmodified	_EYYDKAFDRI_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.5470653510333	3	440.547065	1318.61937	1.1921	0.00052519	1.2498	0.0005506	2.4419	0.0010758	440.5479546218851	20.02	0.12035	20.006	19.958	20.078	-0.014141	1407	37	0.77102906	0.022227407	0.7695096	468.0766	0	13.493805						93	6	2	NaN	NaN	NaN	0.3742	1	18243	18243		24.67	15.1	1	16215			4866	1235	2822	2870	3852	3852					-0.027198255360644907
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.80114255355	2	689.801143	1377.58773	2.0281	0.001399	-1.5884	-0.0010957	0.43967	0.00030328	689.7992000328566	19.972	0.19229	19.972	19.924	20.117	0	1083	55	0.9699114	0.03296125	0.9699114	392.37158	0	13.334259						311	9	4	NaN	NaN	NaN	0.02603	1	19870	19870		61.199	31.163	1	60915			4867	1965	2823	2871	3853	3853					-0.08595818290018542
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.80114255355	2	689.801143	1377.58773	1.4912	0.0010286	-0.95192	-0.00065663	0.53924	0.00037197	689.8003725735699	19.996	0.21661	19.982	19.958	20.174	-0.014141	1086	55	0.9680805	0.032964826	0.9665611	391.63092	0	13.335693						334	10	4	NaN	NaN	NaN	0.00022865	1	18935	18935		101.27	72.779	1	58392			4868	1965	2823	2871	3854	3854					-0.08595818290018542
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.20318719123327	3	460.203187	1377.58773	1.0292	0.00047366	-0.29361	-0.00013512	0.73563	0.00033854	460.2028611998369	19.996	0.16844	19.982	19.958	20.126	-0.014141	1416	46	0.76547134	0.027791798	0.7639519	464.49655	0	16.86438						285	8	4	NaN	NaN	NaN	0.47445	1	18936	18936		20.936	11.932	1	46198			4869	1965	2823	2871	3855	3855					-0.08595818290018542
EYYEFYFGDNQ	11	Unmodified	_EYYEFYFGDNQ_					0	0	0			REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.7935144867	2	737.793514	1473.57248	1.3488	0.00099511	-10.815	-0.0079794	-9.4665	-0.0069843	737.7855167533053	29.593	0.096504	29.586	29.538	29.635	-0.0070667	1041	40	0.9955231	0.02376312	0.99400365	402.4719	0	9.606995						98	5	3	NaN	NaN	NaN	0.74794	1	19492	19492		4.3102	0.38204	1	9601	+		4870	9343	2824	2872	3856	3856					-0.14536729877863763
EYYEFYFGDNQ	11	Unmodified						0	0	0			REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	737.793514	1473.57248	1.3293	0.00098076	-10.643	-0.0078522	-9.3134	-0.0068714	737.7857465124423	29.57	0.12067	29.57	29.546	29.667	0	1041	37	0.9955231	0.021933973	0.9955231	402.4719		8.867493	-0.0081247	0.00015258	0.00075972	NaN	4.3102	108	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12321	+		4871	9343	2824	2872							-0.14536729877863763
EYYEFYFGDNQ	11	Unmodified						0	0	0			REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	REV__ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	737.793514	1473.57248	1.3488	0.00099511	-10.815	-0.0079794	-9.4665	-0.0069843	737.7855167533053	29.593	0.096504	29.586	29.538	29.635	-0.0070667	1041	40	0.9955231	0.02376312	0.99400365	402.4719		9.606995	0.0081247	-0.00010197	-0.00075972	NaN	4.3102	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9601	+		4872	9343	2824	2872							-0.14536729877863763
EYYPEEDEELE	11	Unmodified	_EYYPEEDEELE_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.78555206885	2	722.785552	1443.55655	0.84717	0.00061232	4.4877	0.0032437	5.3349	0.003856	722.789266901264	31.741	0.072412	31.737	31.688	31.761	-0.0044155	1062	43	0.9827221	0.02561444	0.98120266	397.37347	0	10.357452						79	4	3	NaN	NaN	NaN	0.73455	1	19373	19373		5.1889	2.2994	1	5446.4			4873	1830	2825	2873	3857	3857					-0.14748480905404904
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2927564154501	2	598.292756	1194.57096	1.5996	0.00095704	-1.0157	-0.0006077	0.58389	0.00034934	598.2922495838458	28.074	0.21718	28.074	28.001	28.219	0	1170	70	0.91673553	0.04224682	0.91673553	371.4236	0	17.116669						252	10	3	NaN	NaN	NaN	0.27507	1	16289	16289		20.513	1.3497	1	64131			4874	5146	2826	2874	3858	3858					-0.018542743852776766
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.2927564154501	2	598.292756	1194.57096	0.79295	0.00047442	-1.4086	-0.00084278	-0.61568	-0.00036836	598.2913526692693	28.097	0.16897	28.088	28.064	28.233	-0.0089798	1170	58	0.91673553	0.034899533	0.9152161	371.4236	0	14.139893						252	8	3	NaN	NaN	NaN	0.12866	1	15658	15658		31.675	6.7144	1	66350			4875	5146	2826	2874	3859	3859					-0.018542743852776766
EYYWCWTGF	9	Unmodified	_EYYWCWTGF_					0	0	0		ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.7498671454999	2	627.749867	1253.48518	1.8719	0.0011751	-2.1737	-0.0013645	-0.30185	-0.00018949	627.7478772676816	22.501	0.24108	22.501	22.453	22.694	0	1167	64	0.91857195	0.038569033	0.91857195	371.96786	0	15.618195						353	11	4	NaN	NaN	NaN	0.36492	1	17859	17859		15.175	2.1725	1	94807			4876	6091	2827	2875	3860	3860					-0.1314218256247841
EYYWCWTGF	9	Unmodified						0	0	0		ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.749867	1253.48518	1.1949	0.0007501	-0.86999	-0.00054614	0.32491	0.00020396	627.7488989187764	22.524	0.24116	22.511	22.438	22.679	-0.013733	1170	61	0.91673553	0.03673041	0.9152161	371.2242		14.873688	0.0048896	0.001165	-0.0016779	NaN	15.175	359	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90402			4877	6091	2827	2875							-0.1314218256247841
FAADIISVL	9	Unmodified	_FAADIISVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5400599440001	1	948.54006	947.532783	1.6938	0.0016066	0.77229	0.00073255	2.4661	0.0023392	948.5406632584395	33.48	0.33778	33.48	33.407	33.745	0	282	253	1.4517976	0.14977312	1.4517976	294.98276	0	30.43158						1650	15	5	NaN	NaN	NaN	0.062836	1	7032	7032		41.46	5.4237	1	1487700			4878	4983	2828	2876	3861	3861					0.056918397000458754
FAADIISVL	9	Unmodified	_FAADIISVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	0.96204	0.00091253	-6.5886	-0.0062496	-5.6266	-0.005337	948.5339390305351	33.937	0.096504	33.936	33.887	33.984	-0.0012474	282	67	1.4517976	0.039134502	1.4502782	294.9828	0	7.951538						123	5	2	NaN	NaN	NaN	0.049695	1	6895	6895		47.04	2.7378	1	11152			4879	4983	2828	2876	3862	3862					0.056918397000458754
FAADIISVL	9	Unmodified	_FAADIISVL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	1.6193	0.001536	0.24165	0.00022921	1.861	0.0017652	948.5402417937025	33.454	0.33783	33.452	33.404	33.742	-0.0018501	282	268	1.4517976	0.1587305	1.4502782	294.98276	0	32.251556						1728	15	5	NaN	NaN	NaN	0.056143	1	6901	6901		44.302	2.8423	1	1411500			4880	4983	2828	2876	3863	3863					0.056918397000458754
FAADIISVL	9	Unmodified						0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.54006	947.532783	0.90411	0.00085759	-0.037816	-3.587E-05	0.8663	0.00082172	948.5389684066361	33.793	0.04826	33.793	33.793	33.842	0	288	61	1.4482387	0.03559947	1.4482387	294.25964		7.2332764	-0.071154	0.0019316	-0.0010197	NaN	47.04	77	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7295.3			4881	4983	2828	2876							0.056918397000458754
FAADIISVL	9	Unmodified						0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.54006	947.532783	0.91081	0.00086394	-1.8994	-0.0018016	-0.98856	-0.00093769	948.5374322032344	33.792	0.07243	33.79	33.79	33.863	-0.0018501	285	70	1.4500183	0.040937185	1.4484988	294.62122		8.31781	0.15525	-0.0024442	-0.0016494	NaN	41.46	102	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9289			4882	4983	2828	2876							0.056918397000458754
FAADKYWRF	9	Unmodified	_FAADKYWRF_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;MMP10|p.F401L|1|0.06|ENSG00000166670|chr11:102772870-102772870|G/C|missense_variant	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.8697026879	3	401.869703	1202.58728	1.4064	0.00056517	-1.4236	-0.00057211	-0.01727	-6.9404E-06	401.86918700274305	22.766	0.12058	22.766	22.742	22.863	0	1446	43	0.7469324	0.025968552	0.7469324	453.90067	0	15.780762						122	6	3	NaN	NaN	NaN	0.13999	1	16546	16546		30.035	19.822	1	13700			4883	4501	2829	2877	3864	3864					-0.005911484285434199
FAADKYWRF	9	Unmodified	_FAADKYWRF_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;MMP10|p.F401L|1|0.06|ENSG00000166670|chr11:102772870-102772870|G/C|missense_variant	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.8697026879	3	401.869703	1202.58728	1.362	0.00054734	-1.6538	-0.00066461	-0.29182	-0.00011727	401.8692847824225	22.862	0.16875	22.848	22.8	22.969	-0.01354	1443	34	0.7487872	0.02040279	0.7472678	455.0278	0	12.398499						127	8	3	NaN	NaN	NaN	0.17328	1	15892	15892		27.046	14.74	1	12385			4884	4501	2829	2877	3865	3865					-0.005911484285434199
FAAFEEPEL	9	Unmodified	_FAAFEEPEL_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4935036819	1	1052.4935	1051.48623	2.3115	0.0024329	-0.77022	-0.00081065	1.5413	0.0016222	1052.4915902705484	28.219	0.096529	28.219	28.194	28.291	0	219	67	1.4891195	0.039051414	1.4891195	302.13705	0	7.923401						170	5	3	NaN	NaN	NaN	0.028349	1	10678	10678		61.271	28.818	1	17399			4885	3451	2830	2878	3866	3866					-0.03745644921900748
FAAIGVPWF	9	Unmodified	_FAAIGVPWF_					0	0	0			REV__nc|ENSG00000142046|Q6ZNR0-4|TMEM91	REV__nc|ENSG00000142046|Q6ZNR0-4|TMEM91	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2710957266	2	504.271096	1006.52764	1.7282	0.00087147	-8.1564	-0.004113	-6.4282	-0.0032415	504.2663380190597	21.73	0.024071	21.73	21.73	21.754	0	1308	67	0.83204526	0.04060048	0.83204526	337.8288	0	16.48468						65	2	2	NaN	NaN	NaN	0.48931	1	8842	8842		10.052	1.8067	1	7156.7	+		4886	9837	2831	2879	3867	3867					0.024635806280798533
FAAKEDQLL	9	Unmodified	_FAAKEDQLL_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7794818647001	2	517.779482	1033.54441	1.7799	0.00092162	-2.4437	-0.0012653	-0.66378	-0.00034369	517.7783942167417	20.165	0.12014	20.165	20.117	20.237	0	1236	40	0.876284	0.023932874	0.876284	355.66522	0	9.713837						154	6	3	NaN	NaN	NaN	0.028569	1	9931	9931		60.984	18.666	1	28416			4887	2031	2832	2880	3868	3868					0.028980367233771176
FAAKEDQLL	9	Unmodified						0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.779482	1033.54441	1.3877	0.0007185	-0.60374	-0.0003126	0.78393	0.0004059	517.7787413739926	20.164	0.14445	20.15	20.126	20.271	-0.014143	1236	40	0.876284	0.023932874	0.8747646	355.6652		9.713837	-0.0072273	0.00076279	-0.00075972	NaN	60.984	169	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29325			4888	2031	2832	2880							0.028980367233771176
FAALCFVL	8	Unmodified	_FAALCFVL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.4746229157	1	883.474623	882.467346	1.3523	0.0011947	0.63278	0.00055905	1.9851	0.0017538	883.4746327228014	37.191	0.072216	37.193	37.145	37.217	0.0022469	351	40	1.4108255	0.02318275	1.409306	286.9605	0	4.715332						86	4	2	NaN	NaN	NaN	0.46677	1	5711	5711		32.869	7.9681	1	6374.4			4889	1366	2833	2881	3869	3869					0.021411469733379818
FAATYDISV	9	Unmodified	_FAATYDISV_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.7451077311	2	493.745108	985.475663	0.88698	0.00043794	0.34034	0.00016804	1.2273	0.00060598	493.7458241772346	33.48	0.048267	33.48	33.431	33.48	0	1332	40	0.8172735	0.024015844	0.8172735	331.92664	0	9.753784						63	3	2	NaN	NaN	NaN	0.17818	1	8056	8056		26.732	4.6052	1	12914			4890	5190	2834	2882	3870	3870					-0.017656275763329177
FAAVADAIL	9	Unmodified	_FAAVADAIL_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4981951292999	1	890.498195	889.490919	1.6098	0.0014335	-1.3135	-0.0011696	0.29632	0.00026387	890.4971594265047	29.087	0.09651	29.087	29.063	29.16	0	369	67	1.4001206	0.03926778	1.4001206	284.74863	0	7.9860535						160	5	3	NaN	NaN	NaN	0.098515	1	5931	5931		36.036	4.4753	1	17095			4891	2597	2835	2883	3871	3871					0.04175284011500935
FAAVADAIL	9	Unmodified	_FAAVADAIL_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.4981951292999	1	890.498195	889.490919	1.2124	0.0010796	-0.15104	-0.0001345	1.0613	0.00094512	890.4983328464074	29.111	0.096539	29.103	29.055	29.151	-0.0077209	369	70	1.4001206	0.041054845	1.3986012	284.74863	0	8.349518						130	5	2	NaN	NaN	NaN	0.12945	1	5812	5812		31.561	6.6	1	17135			4892	2597	2835	2883	3872	3872					0.04175284011500935
FAAYTGDVSA	10	Unmodified	_FAAYTGDVSA_					0	0	0		ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2323644966	2	501.232364	1000.45018	1.0069	0.0005047	-1.5683	-0.0007861	-0.56142	-0.0002814	501.7327771689691	33.48	0.14475	33.48	33.431	33.576	0	1332	61	0.8172735	0.03695345	0.8172735	331.85828	0	15.005157						354	7	6	NaN	NaN	NaN	0.53991	1	8595	8595		17.799	0	1	63585			4893	2023	2836	2884	3873	3873					-0.05003102098760337
FADAASLLL	9	Unmodified	_FADAASLLL_					0	0	0		nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-2|NUP85	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5087598156002	1	920.50876	919.501483	1.0175	0.00093665	2.3276	0.0021426	3.3451	0.0030792	920.5115169853451	31.718	0.14484	31.718	31.646	31.79	0	294	67	1.4446791	0.039159417	1.4446791	293.66458	0	7.9600525						164	7	2	NaN	NaN	NaN	0.23112	1	6410	6410		23.334	2.779	1	14732			4894	2455	2837	2885	3874	3874					0.03851266665969888
FADASKGDDL	10	Unmodified	_FADASKGDDL_					0	0	0		ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.74055366945	2	519.740554	1037.46655	1.7112	0.00088938	-0.99919	-0.00051932	0.71202	0.00037006	519.7400183324551	15.894	0.095866	15.894	15.87	15.966	0	1308	52	0.83204526	0.031374753	0.83204526	337.69284	0	12.733734						125	5	3	NaN	NaN	NaN	0.26776	1	10091	10091		29.706	6.5886	1	15734			4895	4909	2838	2886	3875	3875					-0.050680209326628756
FADASKGDDL	10	Unmodified						0	0	0		ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.740554	1037.46655	2.0204	0.0010501	-2.0214	-0.0010506	-0.00098773	-5.1336E-07	519.7394528272835	15.915	0.19155	15.903	15.855	16.047	-0.012611	1308	61	0.83204526	0.036913514	0.8305259	337.69287		14.981659	0.0044029	-0.00035747	-0.00075972	NaN	29.706	208	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22590			4896	4909	2838	2886							-0.050680209326628756
FADATVELSL	10	Unmodified	_FADATVELSL_					0	0	0		ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENSG00000028528|ENST00000559844|SNX1	ENSG00000028528|ENST00000559844|SNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5462675339002	1	1065.54627	1064.53899	1.6825	0.0017928	-4.5231	-0.0048196	-2.8406	-0.0030268	1065.542022491289	29.063	0.14478	29.063	29.015	29.16	0	120	76	1.5476005	0.044233322	1.5476005	313.9528	0	8.973358						196	7	3	NaN	NaN	NaN	0.27719	1	11329	11329		28.896	1.1068	1	23104			4897	486	2839	2887	3876	3876					0.009303131409296839
FADATVELSL	10	Unmodified	_FADATVELSL_					0	0	0		ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENSG00000028528|ENST00000559844|SNX1	ENSG00000028528|ENST00000559844|SNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5462675339002	1	1065.54627	1064.53899	1.0351	0.0011029	-2.0002	-0.0021313	-0.96508	-0.0010283	1065.5451520241468	29.062	0.16892	29.055	29.007	29.175	-0.0077209	120	76	1.5476005	0.04423809	1.5460811	313.9528	0	8.974304						181	8	3	NaN	NaN	NaN	0.12649	1	11070	11070		42.318	14.529	1	20505			4898	486	2839	2887	3877	3877					0.009303131409296839
FADFERHFL	9	Unmodified	_FADFERHFL_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810259-29810893:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.5294575405333	3	394.529458	1180.56654	1.7124	0.0006756	-2.9106	-0.0011483	-1.1982	-0.00047271	394.528592507113	23.103	0.1687	23.103	23.055	23.224	0	1452	49	0.74322224	0.029688	0.74322224	451.74146	0	18.04483						131	8	2	NaN	NaN	NaN	0.21451	1	15842	15842		26.96	4.9344	1	21043			4899	897	2840	2888	3878	3878					-0.01651738808209302
FADFERHFL	9	Unmodified	_FADFERHFL_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810259-29810893:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2905480775	2	591.290548	1180.56654	1.8954	0.0011207	-2.9085	-0.0017198	-1.0131	-0.00059906	591.2899376846664	23.103	0.19266	23.103	23.007	23.2	0	1155	58	0.92591566	0.034884453	0.92591566	375.19385	0	14.135681						152	9	2	NaN	NaN	NaN	0.090258	1	15843	15843		37.231	19.451	1	21823			4900	897	2840	2888	3879	3879					-0.01651738808209302
FADFERHFL	9	Unmodified	_FADFERHFL_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810259-29810893:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.5294575405333	3	394.529458	1180.56654	1.6351	0.0006451	-2.4666	-0.00097314	-0.83146	-0.00032804	394.5281707623494	23.223	0.21717	23.21	23.138	23.355	-0.013294	1452	43	0.74322224	0.025974154	0.7417028	451.74142	0	15.787506						175	10	3	NaN	NaN	NaN	0.16939	1	15257	15257		24.393	10.756	1	18365			4901	897	2840	2888	3880	3880					-0.01651738808209302
FADFERHFL	9	Unmodified						0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810259-29810893:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.290548	1180.56654	1.3812	0.00081669	1.7724	0.001048	3.1536	0.0018647	591.2925828930661	23.223	0.096527	23.21	23.162	23.258	-0.013294	1152	91	0.92775106	0.055113494	0.9262317	375.93756		22.332733	0.053359	0.0028	0.000158	NaN	37.231	160	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21014			4902	897	2840	2888							-0.01651738808209302
FADGHVLEL	9	Unmodified	_FADGHVLEL_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.75854945734994	2	500.758549	999.502546	1.346	0.00067405	5.9302	0.0029696	7.2763	0.0036437	500.7616614639843	23.923	0.1447	23.91	23.861	24.006	-0.013048	1284	73	0.8468043	0.044272304	0.8452849	343.8538	0	17.977234						188	7	3	NaN	NaN	NaN	0.33629	1	8387	8387		16.584	2.1591	1	22988			4903	391	2841	2889	3881	3881					0.002774810348455503
FADGVYLVL	9	Unmodified	_FADGVYLVL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5400599440001	1	996.54006	995.532783	1.1352	0.0011313	2.732	0.0027226	3.8672	0.0038538	996.5412805438087	33.189	0.096535	33.186	33.138	33.235	-0.0024796	201	58	1.4997677	0.033706546	1.4982482	304.51892	0	6.843933						152	5	3	NaN	NaN	NaN	0.14301	1	8250	8250		29.598	4.6373	1	12326			4904	5723	2842	2890	3882	3882					0.03483839700038516
FADGVYLVL	9	Unmodified						0	0	0		ENSG00000197702|ENST00000334956|PARVA;nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.54006	995.532783	1.2306	0.0012263	1.749	0.001743	2.9796	0.0029693	996.5410953174359	33.19	0.12066	33.19	33.166	33.287	0	204	58	1.4979934	0.033706546	1.4979934	304.15866		6.843933	0.0019056	-0.00059168	-0.00012739	NaN	29.598	158	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13642			4905	5723	2842	2890							0.03483839700038516
FADLFDPVI	9	Unmodified	_FADLFDPVI_					0	0	0		ENST00000505135.1_1_5:80548598-80553554:+|nuORF;ENSG00000237289|ENST00000441322|CKMT1B;ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000131730|ENST00000254035|CKMT2;nc|ENSG00000237289|P12532-2|CKMT1A	ENST00000505135.1_1_5:80548598-80553554:+|nuORF	ENST00000505135.1_1_5:80548598-80553554:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5349745661	1	1036.53497	1035.5277	0.84198	0.00087274	0.076476	7.927E-05	0.91846	0.00095201	1036.5347713630197	35.072	0.096519	35.072	35.023	35.12	0	162	97	1.5228153	0.056729794	1.5228153	309.0355	0	11.512573						167	5	2	NaN	NaN	NaN	0.04947	1	10013	10013		47.136	17.537	1	21559			4906	2722	2843	2891	3883	3883					0.011355358374203206
FADLFDPVI	9	Unmodified	_FADLFDPVI_					0	0	0		ENST00000505135.1_1_5:80548598-80553554:+|nuORF;ENSG00000237289|ENST00000441322|CKMT1B;ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000131730|ENST00000254035|CKMT2;nc|ENSG00000237289|P12532-2|CKMT1A	ENST00000505135.1_1_5:80548598-80553554:+|nuORF	ENST00000505135.1_1_5:80548598-80553554:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5349745661	1	1036.53497	1035.5277	1.0204	0.0010577	-0.49879	-0.00051701	0.52165	0.0005407	1036.5343920536206	35.07	0.096516	35.07	35.022	35.119	-4.5776E-05	156	103	1.5263584	0.060275555	1.5248389	309.7545	0	12.232117						201	5	3	NaN	NaN	NaN	0.074859	1	9804	9804		39.459	9.8604	1	21665			4907	2722	2843	2891	3884	3884					0.011355358374203206
FADPDDFTL	9	Unmodified	_FADPDDFTL_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.4571181756	1	1040.45712	1039.44984	1.1018	0.0011463	1.6158	0.0016812	2.7176	0.0028275	1040.458757818902	28.894	0.16895	28.885	28.837	29.006	-0.0083485	204	88	1.4979934	0.051479697	1.496474	303.9831	0	10.446594						308	8	3	NaN	NaN	NaN	0.043119	1	9964	9964		49.833	24.872	1	35468			4908	5209	2844	2892	3885	3885					-0.06830521818596935
FADPDDFTLG	10	Unmodified	_FADPDDFTLG_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.4785818992	1	1097.47858	1096.47131	1.7085	0.001875	-4.9604	-0.005444	-3.252	-0.0035689	1097.4787033300286	27.518	0.096539	27.508	27.484	27.581	-0.009552	144	76	1.533442	0.04424274	1.5319226	310.9646	0	8.971924						114	5	2	NaN	NaN	NaN	0.507	1	12343	12343		19.164	4.7386	1	7219.7			4909	5209	2845	2893	3886	3886					-0.07307136789881952
FADPNMLDTL	10	Unmodified	_FADPNMLDTL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1136.5292372612	1	1136.52924	1135.52196	1.3066	0.001485	-1.452	-0.0016502	-0.14531	-0.00016515	1136.5279390397625	29.497	0.072374	29.49	29.466	29.538	-0.0070648	78	49	1.5723488	0.028265953	1.5708294	318.71808	0	5.729553						78	4	2	NaN	NaN	NaN	0.23668	1	13820	13820		32.377	5.0806	1	7525.5			4910	3169	2846	2894	3887	3887					-0.040379307365356
FADQPIQI	8	Unmodified	_FADQPIQI_					0	0	0		ENST00000587533.1_1_19:14208073-14208361:-|nuORF;nc|ENSG00000142875|P22694-5|PRKACB;RBM17-PRKACB|2|fusion;RBM17-PRKACB|3|fusion;ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694|PRKACB;nc|ENSG00000142875|P22694-8|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;RBM17-PRKACB|1|fusion	ENST00000587533.1_1_19:14208073-14208361:-|nuORF	ENST00000587533.1_1_19:14208073-14208361:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4883587245	1	931.488359	930.481082	1.6899	0.0015741	-0.04015	-3.74E-05	1.6497	0.0015367	931.4880183513845	27.495	0.16896	27.495	27.398	27.567	0	315	91	1.4322147	0.053456068	1.4322147	291.08023	0	10.864288						270	8	3	NaN	NaN	NaN	0.30832	1	6620	6620		41.46	7.0213	1	31099			4911	784	2847	2895	3888	3888					0.013060960061352489
FADQPIQI	8	Unmodified						0	0	0		ENST00000587533.1_1_19:14208073-14208361:-|nuORF;nc|ENSG00000142875|P22694-5|PRKACB;RBM17-PRKACB|2|fusion;RBM17-PRKACB|3|fusion;ENSG00000142875|ENST00000370685|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694|PRKACB;nc|ENSG00000142875|P22694-8|PRKACB;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000072062|P17612-2|PRKACA;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;RBM17-PRKACB|1|fusion	ENST00000587533.1_1_19:14208073-14208361:-|nuORF	ENST00000587533.1_1_19:14208073-14208361:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	931.488359	930.481082	1.0122	0.00094284	-0.36114	-0.0003364	0.65104	0.00060643	931.4875268149807	27.518	0.096539	27.508	27.484	27.581	-0.009552	312	82	1.433996	0.04809761	1.4324765	291.44223		9.775269	0.0068899	-0.00017031	0.00013088	NaN	41.46	175	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27417			4912	784	2847	2895							0.013060960061352489
FADRLYDSM	9	Oxidation (M)	_FADRLYDSM(Oxidation (M))_		FADRLYDSM(1)		FADRLYDSM(67)	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.25023128625	2	567.250231	1132.48591	2.3798	0.00135	-1.3552	-0.00076876	1.0246	0.00058121	567.2492283233057	18.268	0.21591	18.268	18.173	18.388	0	1242	55	0.87260187	0.03315395	0.87260187	353.76367	0	13.44104						167	10	2	NaN	NaN	NaN	0.02431	1	14165	14165		66.544	52.119	1	24122			4913	5275	2848	2896	3889	3889		550			-0.07503387913402548
FAEKEPSKRR	10	Unmodified	_FAEKEPSKRR_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.56668277866663	3	416.566683	1246.67822	1.7391	0.00072445	-10.856	-0.0045223	-9.117	-0.0037978	416.5621490604297	17.114	0.096075	17.1	17.028	17.124	-0.013569	1434	37	0.75435036	0.022251546	0.7528309	458.22485	0	13.516541						75	5	2	NaN	NaN	NaN	0.68699	1	16952	16952		8.9416	4.731	1	5965.7	+		4914	9234	2849	2897	3890	3890					0.0647469554894542
FAELFSYVL	9	Unmodified	_FAELFSYVL_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5662746945	1	1088.56627	1087.559	1.7154	0.0018674	0.11337	0.00012341	1.8288	0.0019908	1088.5648211037887	36.157	0.096474	36.157	36.133	36.229	0	69	49	1.5776473	0.028253913	1.5776473	319.9615	0	5.730133						141	5	3	NaN	NaN	NaN	0.12328	1	12283	12283		32.453	11.897	1	8748			4915	3349	2850	2898	3891	3891					0.0187210887152105
FAELFSYVL	9	Unmodified						0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1088.56627	1087.559	1.5072	0.0016407	-2.4413	-0.0026575	-0.93412	-0.0010168	1088.564189872774	36.18	0.096409	36.181	36.132	36.229	0.0011024	66	43	1.579413	0.024719596	1.5778936	320.3196		5.0133667	0.011757	-0.0011457	0.00012317	NaN	32.453	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5474.2			4916	3349	2850	2898							0.0187210887152105
FAESIDVEL	9	Unmodified	_FAESIDVEL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5040683682001	1	1022.50407	1021.49679	2.5373	0.0025944	-0.013932	-1.4245E-05	2.5234	0.0025802	1022.504335228801	28.243	0.096529	28.243	28.194	28.291	0	204	85	1.4979934	0.04967022	1.4979934	304.05307	0	10.081726						185	5	2	NaN	NaN	NaN	0.055351	1	9430	9430		44.638	11.213	1	28376			4917	2194	2851	2899	3892	3892					-0.01309662267465228
FAESIDVEL	9	Unmodified	_FAESIDVEL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5040683682001	1	1022.50407	1021.49679	1.3394	0.0013696	-1.0325	-0.0010557	0.30696	0.00031387	1022.502681042941	28.266	0.096512	28.257	28.209	28.305	-0.0089779	204	100	1.4979934	0.058555484	1.496474	304.05307	0	11.885193						243	5	3	NaN	NaN	NaN	0.023828	1	9235	9235		67.154	30.568	1	28058			4918	2194	2851	2899	3893	3893					-0.01309662267465228
FAETTDGV	8	Unmodified	_FAETTDGV_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.3781395731	1	839.37814	838.370863	1.1452	0.00096123	-7.3606	-0.0061783	-6.2154	-0.0052171	839.3716583178434	34.927	0.26526	34.927	34.879	35.144	0	534	79	1.3016734	0.046660423	1.3016734	264.97275	0	9.498322						362	12	3	NaN	NaN	NaN	0.67593	1	5238	5238		20.555	4.1388	1	41611	+		4919	10842	2852	2900	3894	3894					-0.05478749052895182
FAEVEQIAF	9	Unmodified	_FAEVEQIAF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2662073139501	2	527.266207	1052.51786	1.6569	0.00087365	-1.4074	-0.0007421	0.2495	0.00013155	527.2668952191362	28.556	0.048269	28.556	28.532	28.581	0	1329	31	0.81912065	0.018468738	0.81912065	332.385	0	7.494293						48	3	2	NaN	NaN	NaN	0.56671	1	10735	10735		6.8632	0.77288	1	3462.3			4920	2299	2853	2901	3895	3895					-0.006296521679587386
FAEVEQIAF	9	Unmodified	_FAEVEQIAF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2662073139501	2	527.266207	1052.51786	1.7626	0.00092934	-3.0622	-0.0016146	-1.2996	-0.00068525	527.2649382437284	28.556	0.048277	28.547	28.523	28.572	-0.0083504	1332	40	0.8172735	0.024008036	0.81575406	331.63547	0	9.742035						43	3	2	NaN	NaN	NaN	0.59509	1	10511	10511		5.6942	0	1	2813			4921	2299	2853	2901	3896	3896					-0.006296521679587386
FAFDEIVAL	9	Unmodified	_FAFDEIVAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5349745661	1	1024.53497	1023.5277	1.6329	0.001673	-0.96021	-0.00098377	0.6727	0.0006892	1024.5338790851379	34.999	0.16879	34.999	34.951	35.12	0	180	109	1.5121819	0.0638212	1.5121819	306.92484	0	12.953674						440	8	4	NaN	NaN	NaN	0.12945	1	9505	9505		31.561	1.9627	1	84871			4922	1119	2854	2902	3897	3897					0.016875358374250027
FAFDEIVAL	9	Unmodified	_FAFDEIVAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5349745661	1	1024.53497	1023.5277	1.4379	0.0014731	-0.13238	-0.00013563	1.3055	0.0013375	1024.5344977652535	34.998	0.24133	34.998	34.95	35.191	-4.5776E-05	177	106	1.5139546	0.062045097	1.5124352	307.28464	0	12.59317						455	11	4	NaN	NaN	NaN	0.049695	1	9321	9321		47.04	14.587	1	89720			4923	1119	2854	2902	3898	3898					0.016875358374250027
FAFEGIGDEDL	11	Unmodified	_FAFEGIGDEDL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7745934520501	2	606.774593	1211.53463	1.4653	0.00088909	2.7032	0.0016402	4.1685	0.0025293	606.7757721080579	30.173	0.12066	30.173	30.125	30.246	0	1218	76	0.8873258	0.045965135	0.8873258	359.4505	0	18.620209						211	6	3	NaN	NaN	NaN	0.18551	1	16755	16755		31.675	20.505	1	30160			4924	2003	2855	2903	3899	3899					-0.06267196072644765
FAFEGIGDEDL	11	Unmodified	_FAFEGIGDEDL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7745934520501	2	606.774593	1211.53463	0.58185	0.00035305	1.1781	0.00071485	1.76	0.0010679	606.7752826960475	30.172	0.16894	30.166	30.094	30.263	-0.0064106	1215	88	0.8891654	0.053302348	0.88764596	360.1957	0	21.592468						266	8	4	NaN	NaN	NaN	0.022256	1	16084	16084		60.984	39.149	1	30520			4925	2003	2855	2903	3900	3900					-0.06267196072644765
FAFIVEHT	8	Unmodified	_FAFIVEHT_					0	0	0			REV__ENSG00000112164|ENST00000373256|GLP1R	REV__ENSG00000112164|ENST00000373256|GLP1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.2503602845	2	482.25036	962.486168	2.0595	0.00099319	-1.9577	-0.00094411	0.10177	4.908E-05	482.24943322361617	25.539	0.096445	25.539	25.515	25.612	0	1290	34	0.84311575	0.020290375	0.84311575	342.53476	0	8.243408						94	5	3	NaN	NaN	NaN	0.82797	1	7403	7403		5.4659	2.3125	1	9047.1	+		4926	9114	2856	2904	3901	3901					0.003423998687594576
FAFPDEFVF	9	Unmodified	_FAFPDEFVF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5193245019	1	1118.51932	1117.51205	2.1206	0.0023719	-0.21494	-0.00024041	1.9056	0.0021315	1118.5189320054906	36.712	0.21659	36.712	36.639	36.856	0	90	139	1.5652816	0.08137655	1.5652816	317.34695	0	16.498383						866	10	4	NaN	NaN	NaN	0.011118	1	13570	13570		89.521	50.603	1	134810			4927	2362	2857	2905	3902	3902					-0.04200750679615339
FAFPDEFVF	9	Unmodified	_FAFPDEFVF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.5193245019	1	1118.51932	1117.51205	1.5986	0.0017881	-0.43669	-0.00048844	1.1619	0.0012996	1118.5187010033637	36.709	0.21649	36.711	36.639	36.856	0.0016747	90	133	1.5652816	0.07782197	1.5637622	317.34695	0	15.77771						805	10	4	NaN	NaN	NaN	0.030391	1	13169	13169		58.599	27.989	1	118980			4928	2362	2857	2905	3903	3903					-0.04200750679615339
FAFVEFEL	8	Unmodified	_FAFVEFEL_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4978607783002	1	1001.49786	1000.49058	1.3176	0.0013196	0.61009	0.00061101	1.9277	0.0019306	1001.4981801516982	35.578	0.31351	35.578	35.53	35.844	0	228	67	1.4837929	0.039067984	1.4837929	301.25494	0	7.9319763						395	14	4	NaN	NaN	NaN	0.09307	1	8605	8605		65.672	21.425	1	70017			4929	954	2858	2906	3904	3904					-0.009641357083296498
FAFVEFEL	8	Unmodified	_FAFVEFEL_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENST00000456578.6_1_1:40205841-40207105:+|nuORF;ENST00000485507.5_1_1:40204572-40207704:+|nuORF;ENST00000495526.5_1_1:40205841-40208939:+|nuORF	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4978607783002	1	1001.49786	1000.49058	0.95308	0.00095451	0.39913	0.00039973	1.3522	0.0013542	1001.4975918948743	35.553	0.26524	35.553	35.529	35.794	0.00052643	225	76	1.4855686	0.04439783	1.4840492	301.61548	0	9.014099						407	12	4	NaN	NaN	NaN	0.09307	1	8437	8437		65.672	24.212	1	67682			4930	954	2858	2906	3905	3905					-0.009641357083296498
FAGAKLED	8	Unmodified	_FAGAKLED_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.4305094946001	1	850.430509	849.423233	0.6726	0.000572	4.3347	0.0036863	5.0073	0.0042583	850.4337722312307	32.513	0.16893	32.51	32.462	32.631	-0.0031052	1212	52	0.8910048	0.03126645	0.88948536	181.33765	0	6.3633575						191	8	3	NaN	NaN	NaN	0.84887	1	5241	5241		0.32989	0	1	22197			4931	4004	2859	2907	3906	3906					-0.007501659192826082
FAGDPIVSI	9	Unmodified	_FAGDPIVSI_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4931097514001	1	918.49311	917.485833	1.5053	0.0013826	-1.1755	-0.0010797	0.32976	0.00030289	918.4919034054114	27.591	0.14478	27.591	27.543	27.688	0	312	64	1.433996	0.03741324	1.433996	291.5024	0	7.605377						109	7	2	NaN	NaN	NaN	0.27442	1	6371	6371		20.555	0	1	8295.8	+		4932	11258	2860	2908	3907	3907					0.023789801489101592
FAGGAKGA	8	Unmodified	_FAGGAKGA_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3569506210001	1	678.356951	677.349674	1.6319	0.001107	-0.73968	-0.00050177	0.89222	0.00060524	678.3553795262452	24.984	0.048256	24.972	24.924	24.972	-0.012392	1089	43	0.96624947	0.02563101	0.96473	197.44527	0	5.237488						57	3	2	NaN	NaN	NaN	0.84876	1	2704	2704		0.39566	0	1	5219.5	+		4933	8805	2861	2909	3908	3908					-0.001906695710886197
FAGGPEEVL	9	Unmodified	_FAGGPEEVL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4567242451002	1	918.456724	917.449448	1.3759	0.0012637	-2.0045	-0.001841	-0.62859	-0.00057733	918.4545473103398	24.309	0.28964	24.309	24.092	24.381	0	387	70	1.389409	0.04108548	1.389409	282.43896	0	8.351868						305	13	2	NaN	NaN	NaN	0.043119	1	6366	6366		49.833	18.272	1	31975			4934	3795	2862	2910	3909	3909					-0.0125789674779071
FAGGPEEVL	9	Unmodified	_FAGGPEEVL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4567242451002	1	918.456724	917.449448	1.3609	0.0012499	-0.1465	-0.00013456	1.2144	0.0011154	918.4564706562144	24.309	0.14483	24.296	24.224	24.368	-0.012749	390	61	1.3876231	0.03572464	1.3861036	282.0759	0	7.2621155						191	7	2	NaN	NaN	NaN	0.062072	1	6232	6232		41.785	21.229	1	22072			4935	3795	2862	2910	3910	3910					-0.0125789674779071
FAGMPITL	8	Unmodified	_FAGMPITL_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;ENST00000589195.1_1_17:42307151-42307565:-|nuORF	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.4538874736	1	849.453887	848.446611	1.3492	0.0011461	2.0144	0.0017111	3.3636	0.0028572	849.4562642732726	31.041	0.072447	31.036	31.036	31.109	-0.0050716	429	46	1.3643885	0.026829243	1.362869	277.68597	0	5.460388						60	4	2	NaN	NaN	NaN	0.69631	1	5231	5231		19.285	5.5477	1	4843.8			4936	4068	2863	2911	3911	3911					0.016325565936767816
FAGQSGHF	8	Unmodified	_FAGQSGHF_					0	0	0		ENST00000375911.1_1_6:31628311-31628413:-|nuORF	ENST00000375911.1_1_6:31628311-31628413:-|nuORF	ENST00000375911.1_1_6:31628311-31628413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.3842280040002	1	850.384228	849.376952	0.9318	0.00079239	-2.8338	-0.0024098	-1.902	-0.0016174	850.3812372032878	29.376	0.14477	29.368	29.344	29.489	-0.0077229	372	55	1.3983358	0.032124758	1.3968164	284.59015	0	6.5380554						137	7	2	NaN	NaN	NaN	0.84651	1	5240	5240		1.6704	0.2308	1	11597			4937	6695	2864	2912	3912	3912					-0.05376186030707686
FAGVGAGV	8	Unmodified	_FAGVGAGV_					0	0	0			REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479002	1	677.361702	676.354425	0.89745	0.0006079	8.9307	0.0060493	9.8281	0.0066572	677.3675107183365	29.352	0.33782	29.344	29.272	29.61	-0.0077209	768	76	1.1610622	0.04524398	1.1595428	237.26057	0	9.245499						339	15	2	NaN	NaN	NaN	0.84651	1	2680	2680		1.6704	0	1	43919	+		4938	10346	2865	2913	3913	3913					0.003302145716816085
FAGVGAGV	8	Unmodified						0	0	0			REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.361702	676.354425	1.2321	0.00083456	8.9439	0.0060583	10.176	0.0068928	677.3674136766389	29.353	0.24137	29.353	29.28	29.522	0	768	82	1.1610622	0.048889756	1.1610622	237.26057		9.990494	0.0042382	3.7972E-06	0.00075972	NaN	1.6704	297	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45587	+		4939	10346	2865	2913							0.003302145716816085
FAGVGAGV	8	Unmodified						0	0	0			REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	677.361702	676.354425	0.89745	0.0006079	8.9307	0.0060493	9.8281	0.0066572	677.3675107183365	29.352	0.33782	29.344	29.272	29.61	-0.0077209	768	76	1.1610622	0.04524398	1.1595428	237.26057		9.245499	-0.0042382	-5.165E-06	-0.00075972	NaN	1.6704	339	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43919	+		4940	10346	2865	2913							0.003302145716816085
FAGVVLYL	8	Unmodified	_FAGVVLYL_					0	0	0		PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant;ENSG00000184500|ENST00000394236|PROS1	PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant	PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.5131169120001	1	881.513117	880.50584	1.3017	0.0011475	0.68435	0.00060327	1.9861	0.0017508	881.5116129749982	33.287	0.048267	33.287	33.287	33.335	0	339	31	1.4179583	0.017826319	1.4179583	288.42117	0	3.6259766						42	3	2	NaN	NaN	NaN	0.81214	1	5814	5814		7.5902	2.6805	1	2270.5			4941	5354	2866	2914	3914	3914					0.06080775879513567
FAGVVLYL	8	Unmodified	_FAGVVLYL_					0	0	0		PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant;ENSG00000184500|ENST00000394236|PROS1	PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant	PROS1|p.R316C|1|0.34|ENSG00000184500|chr3:93896595-93896595|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.5131169120001	1	881.513117	880.50584	1.7029	0.0015012	-0.31144	-0.00027454	1.3915	0.0012266	881.5120093846369	33.285	0.072376	33.283	33.259	33.331	-0.0024757	336	37	1.419741	0.021391511	1.4182216	288.78378	0	4.351166						51	4	2	NaN	NaN	NaN	0.71635	1	5690	5690		18.034	5.7748	1	2757.2			4942	5354	2866	2914	3915	3915					0.06080775879513567
FAIAAPPP	8	Unmodified	_FAIAAPPP_					0	0	0			REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4399519689	1	783.439952	782.432676	1.8901	0.0014807	3.4235	0.0026821	5.3136	0.0041629	783.4439439638836	55.028	0.12019	55.028	55.004	55.124	0	378	49	1.3947657	0.028570533	1.3947657	284.25003	0	5.8226013						73	6	2	NaN	NaN	NaN	0.84876	1	4531	4531		0.39566	0	1	6003.3	+		4943	12169	2867	2915	3916	3916					0.03275647156897321
FAIAAPPP	8	Unmodified						0	0	0			REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.439952	782.432676	1.8901	0.0014807	3.4235	0.0026821	5.3136	0.0041629	783.4439439638836	55.028	0.12019	55.028	55.004	55.124	0	378	49	1.3947657	0.028570533	1.3947657	284.25003		5.8226013	-0.010779	-0.0021869	-0.0010254	NaN	0.39566	73	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6003.3	+		4944	12169	2867	2915							0.03275647156897321
FAIAAPPP	8	Unmodified						0	0	0			REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	REV__ENST00000435216.1_1_1:207936430-207936559:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.439952	782.432676	0.28792	0.00022557	7.8417	0.0061435	8.1297	0.0063691	783.4470029943507	55.05	0.071976	55.049	55.001	55.073	-0.0006218	372	40	1.3983358	0.02320242	1.3968164	284.9776		4.728607	0.010779	0.0012745	0.0010254	NaN	0.39566	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4352.8	+		4945	12169	2867	2915							0.03275647156897321
FAIFGITTGQS	11	Unmodified	_FAIFGITTGQS_					0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2980387586	2	571.298039	1140.58152	1.5189	0.00086774	5.4223	0.0030978	6.9412	0.0039655	571.3014791130437	28.918	0.048294	28.918	28.918	28.967	0	1197	46	0.9001988	0.02757907	0.9001988	364.92065	0	11.179932						60	3	2	NaN	NaN	NaN	0.57257	1	14472	14472		15.822	6.2103	1	11107	+		4946	9020	2868	2916	3917	3917					0.016857082691331016
FAIFGITTGQS	11	Unmodified						0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.298039	1140.58152	1.5189	0.00086774	5.4223	0.0030978	6.9412	0.0039655	571.3014791130437	28.918	0.048294	28.918	28.918	28.967	0	1197	46	0.9001988	0.02757907	0.9001988	364.92065		11.179932	0.1614	-0.0034732	0.0035176	NaN	15.822	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11107	+		4947	9020	2868	2916							0.016857082691331016
FAIFGITTGQS	11	Unmodified						0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.298039	1140.58152	0.87351	0.00049903	10.852	0.0061996	11.725	0.0066987	571.3041706773458	28.604	0.14477	28.596	28.547	28.692	-0.0083504	1206	49	0.894683	0.029419243	0.89316356	362.68463		11.925903	-0.1614	0.0027305	-0.0035176	NaN	15.822	164	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18133	+		4948	9020	2868	2916							0.016857082691331016
FAIPGSIFL	9	Unmodified	_FAIPGSIFL_					0	0	0		ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENST00000524543.5_1_11:9304973-9316821:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5502306998	1	964.550231	963.542954	1.0653	0.0010275	1.2275	0.001184	2.2928	0.0022115	964.5509639428333	35.914	0.14463	35.916	35.867	36.012	0.0011024	189	139	1.5068626	0.08165312	1.5053432	306.0982	0	16.5867						415	7	3	NaN	NaN	NaN	0.024986	1	7297	7297		65.672	18.632	1	34695			4949	4485	2869	2917	3918	3918					0.059724474252675464
FAIPLIEKL	9	Unmodified	_FAIPLIEKL_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.3286106055001	2	522.328611	1042.64267	1.4564	0.00076073	-0.98475	-0.00051436	0.47168	0.00024637	522.3282784862997	30.777	0.38614	30.777	30.608	30.994	0	1242	73	0.87260187	0.04420048	0.87260187	354.13007	0	17.937988						818	17	5	NaN	NaN	NaN	0.017076	1	10339	10339		75.698	7.5902	1	451370			4950	250	2870	2918	3919	3919					0.12305265039231017
FAIPLIEKL	9	Unmodified	_FAIPLIEKL_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.3286106055001	2	522.328611	1042.64267	1.7035	0.0008898	-0.94692	-0.00049461	0.7566	0.00039519	522.3282254363136	30.776	0.48268	30.77	30.601	31.084	-0.0057545	1239	76	0.87444305	0.046044707	0.8729236	354.8773	0	18.686432						867	21	4	NaN	NaN	NaN	0.017076	1	10136	10136		75.698	17.463	1	460010			4951	250	2870	2918	3920	3920					0.12305265039231017
FAIPLIERL	9	Unmodified	_FAIPLIERL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.3316846107001	2	536.331685	1070.64882	1.3385	0.00071788	-1.1632	-0.00062385	0.17532	9.4031E-05	536.3308395051272	30.825	0.14477	30.825	30.753	30.897	0	1221	49	0.885486	0.029441535	0.885486	359.23633	0	11.944275						166	7	2	NaN	NaN	NaN	0.041983	1	11606	11606		50.315	2.8336	1	41230			4952	1637	2871	2919	3921	3921					0.11631783270763663
FAISPWGL	8	Unmodified	_FAISPWGL_					0	0	0		ENST00000586759.1_1_19:2476166-2476346:+|nuORF	ENST00000586759.1_1_19:2476166-2476346:+|nuORF	ENST00000586759.1_1_19:2476166-2476346:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4770657567002	1	890.477066	889.469789	1.6479	0.0014675	-9.3985	-0.0083691	-7.7505	-0.0069017	890.4691545005962	24.333	0.19301	24.333	24.285	24.478	0	396	124	1.3840506	0.07321608	1.3840506	281.48053	0	14.890289						504	9	3	NaN	NaN	NaN	0.67593	1	5928	5928		20.555	1.4371	1	94286			4953	7704	2872	2920	3922	3922					0.020633187026760424
FAKGIAIGP	9	Unmodified	_FAKGIAIGP_					0	0	0			REV__tr|U7T2Z8|U7T2Z8_FUSNUPhosphoenolpyruvate-proteinphosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00339PE=3SV=1	REV__tr|U7T2Z8|U7T2Z8_FUSNUPhosphoenolpyruvate-proteinphosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00339PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.5192649224	1	873.519265	872.511988	1.942	0.0016964	-1.0553	-0.00092182	0.88674	0.00077458	873.5183687741991	56.78	0.14416	56.78	56.756	56.9	0	294	166	1.4446791	0.09803939	1.4446791	293.89777	0	19.94461						514	7	4	NaN	NaN	NaN	0.66196	1	5705	5705		2.4615	0.53688	1	188650	+		4954	13586	2873	2921	3923	3923					0.07063294111026153
FALAIVEAL	9	Unmodified	_FALAIVEAL_					0	0	0		ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5607953861	1	946.560795	945.553519	1.3553	0.0012829	-0.097536	-9.2324E-05	1.2578	0.0011906	946.5611109103969	34.95	0.096497	34.95	34.926	35.022	-4.5776E-05	249	67	1.4713576	0.039105415	1.4698381	298.966	0	7.9458313						105	5	2	NaN	NaN	NaN	0.24994	1	6841	6841		22.126	6.951	1	10645			4955	2076	2874	2922	3924	3924					0.07856430079709753
FALAIVEAL	9	Unmodified						0	0	0		ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	946.560795	945.553519	1.0113	0.00095726	2.3497	0.0022241	3.361	0.0031814	946.5636363441585	34.951	0.072273	34.951	34.927	34.999	0	252	52	1.4695803	0.030216217	1.4695803	298.60486		6.1396484	0.00079572	0.00154	-0.0001289	NaN	22.126	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10034			4956	2076	2874	2922							0.07856430079709753
FALFLMIYV	9	Unmodified	_FALFLMIYV_					0	0	0		ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.8117391208001	2	558.811739	1115.60893	1.7493	0.0009775	-2.0603	-0.0011513	-0.31105	-0.00017382	558.8114673811677	34.636	0.072342	34.636	34.563	34.636	-0.0006485	1218	31	0.8873258	0.018395007	0.8858064	359.7984	0	7.458893						42	4	2	NaN	NaN	NaN	0.65388	1	13121	13121		3.1533	0	1	4013.6			4957	6207	2875	2923	3925	3925					0.055745202758316736
FALFLSLYL	9	Unmodified	_FALFLSLYL_					0	0	0		OR10Z1|p.V37L|1|0.28|ENSG00000198967|chr1:158606547-158606547|G/C|missense_variant;ENSG00000198967|ENST00000641002|OR10Z1	OR10Z1|p.V37L|1|0.28|ENSG00000198967|chr1:158606547-158606547|G/C|missense_variant	OR10Z1|p.V37L|1|0.28|ENSG00000198967|chr1:158606547-158606547|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.8153360547501	2	543.815336	1085.61612	2.1306	0.0011586	3.4483	0.0018752	5.5789	0.0030339	543.8173244790376	18.41	0.1201	18.396	18.348	18.468	-0.013948	1209	34	0.892844	0.020229042	0.8913246	362.15796	0	8.205353						114	6	3	NaN	NaN	NaN	0.53206	1	11904	11904		8.2903	0	1	9606			4958	5847	2876	2924	3926	3926					0.07673576147908534
FALGEVEVL	9	Unmodified	_FALGEVEVL_					0	0	0		nc|ENSG00000170469|Q86W54-2|SPATA24;ENSG00000170469|ENST00000450845|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5349745661	1	976.534975	975.527698	1.3468	0.0013152	2.1392	0.002089	3.4859	0.0034041	976.5407998779119	31.911	0.14481	31.911	31.79	31.935	0	246	94	1.4731345	0.055070877	1.4731345	299.19498	0	11.184967						224	7	3	NaN	NaN	NaN	0.094712	1	7770	7770		36.586	6.9881	1	27469			4959	4730	2877	2925	3927	3927					0.038955358374209936
FALGEVEVL	9	Unmodified	_FALGEVEVL_					0	0	0		nc|ENSG00000170469|Q86W54-2|SPATA24;ENSG00000170469|ENST00000450845|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5349745661	1	976.534975	975.527698	0.93622	0.00091426	2.12	0.0020702	3.0562	0.0029845	976.5411001939545	31.91	0.096518	31.906	31.834	31.93	-0.0037613	249	91	1.4713576	0.053285956	1.4698381	298.83408	0	10.822418						200	5	3	NaN	NaN	NaN	0.032764	1	7616	7616		55.494	16.035	1	22992			4960	4730	2877	2925	3928	3928					0.038955358374209936
FALIALNY	8	Unmodified	_FALIALNY_					0	0	0			REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.763103519	2	462.763104	923.511654	1.0365	0.00047967	-0.5003	-0.00023152	0.53623	0.00024815	462.7626629058651	34.517	0.072426	34.517	34.469	34.541	0	1272	73	0.854179	0.044210076	0.854179	347.23563	0	17.972015						155	4	3	NaN	NaN	NaN	0.84876	1	6477	6477		0.39566	0	1	15786	+		4961	9300	2878	2926	3929	3929					0.046838743911848724
FALIALNY	8	Unmodified						0	0	0			REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	462.763104	923.511654	1.0365	0.00047967	-0.5003	-0.00023152	0.53623	0.00024815	462.7626629058651	34.517	0.072426	34.517	34.469	34.541	0	1272	73	0.854179	0.044210076	0.854179	347.23563		17.972015	0.013027	-0.00055185	-0.00016187	NaN	0.39566	155	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15786	+		4962	9300	2878	2926							0.046838743911848724
FALLEVQM	8	Unmodified	_FALLEVQM_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.5015659477002	1	950.501566	949.494289	1.2678	0.001205	0.17216	0.00016364	1.44	0.0013687	950.5024020018521	32.032	0.096539	32.032	32.008	32.104	0	246	91	1.4731345	0.05334258	1.4731345	299.30923	0	10.838074						205	5	3	NaN	NaN	NaN	0.50567	1	7079	7079		30.791	5.0393	1	22596			4963	3555	2879	2927	3930	3930					0.017522107938930276
FALLEVQM	8	Unmodified	_FALLEVQM_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.5015659477002	1	950.501566	949.494289	0.77529	0.00073691	1.4294	0.0013586	2.2046	0.0020955	950.502564082773	32.031	0.072376	32.027	32.003	32.075	-0.0037613	246	97	1.4731345	0.056904793	1.4716152	299.30923	0	11.561798						202	4	3	NaN	NaN	NaN	0.49126	1	6948	6948		31.561	7.7106	1	20246			4964	3555	2879	2927	3931	3931					0.017522107938930276
FALLEVQM	8	Oxidation (M)	_FALLEVQM(Oxidation (M))_		FALLEVQM(1)		FALLEVQM(98)	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4964805698003	1	966.496481	965.489204	1.7223	0.0016646	1.8539	0.0017918	3.5762	0.0034564	966.498476305413	27.808	0.12063	27.808	27.76	27.881	0	237	103	1.4784646	0.060454845	1.4784646	300.321	0	12.280212						241	6	3	NaN	NaN	NaN	0.029796	1	7502	7502		98.041	45.283	1	26199			4965	3555	2879	2928	3932	3932		398			0.005079069312728279
FALLEVQM	8	Oxidation (M)	_FALLEVQM(Oxidation (M))_		FALLEVQM(1)		FALLEVQM(59)	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.7518785182001	2	483.751879	965.489204	1.5279	0.0007391	-3.5313	-0.0017083	-2.0035	-0.00096918	483.7501638479791	27.832	0.096592	27.822	27.798	27.895	-0.009552	1287	49	0.8449601	0.02951479	0.84344065	343.26904	0	11.99054						116	5	3	NaN	NaN	NaN	0.12876	1	7351	7351		58.599	19.681	1	10996			4966	3555	2879	2928	3933	3933		398			0.005079069312728279
FALLEVQM	8	Oxidation (M)						0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	966.496481	965.489204	0.97107	0.00093853	3.1557	0.00305	4.1268	0.0039885	966.4984156366967	27.832	0.14485	27.822	27.75	27.895	-0.009552	237	103	1.4784646	0.060448408	1.4769452	300.32098		12.278931	0.0068736	0.00085677	-0.00075972	NaN	98.041	301	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27841			4967	3555	2879	2928				398			0.005079069312728279
FAMEIDPSL	9	Unmodified	_FAMEIDPSL_					0	0	0		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.486309814	1	1022.48631	1021.47903	2.5143	0.0025709	-0.18776	-0.00019199	2.3266	0.0023789	1022.4863111134904	29.498	0.24138	29.498	29.449	29.691	0	222	190	1.4873441	0.11182356	1.4873441	301.89163	0	22.697235						522	11	2	NaN	NaN	NaN	0.0062755	1	9428	9428		99.986	21.588	1	209740			4968	5772	2880	2929	3934	3934					-0.030847007939769355
FAMEIDPSL	9	Oxidation (M)	_FAM(Oxidation (M))EIDPSL_		FAM(1)EIDPSL		FAM(93)EIDPSL	0	0	1		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4812244360999	1	1038.48122	1037.47395	1.8514	0.0019227	0.067261	6.9849E-05	1.9187	0.0019925	1038.481431190795	24.936	0.2172	24.936	24.816	25.033	0	198	109	1.5015416	0.06388211	1.5015416	304.71075	0	12.963715						518	10	4	NaN	NaN	NaN	0.0094682	1	10094	10094		93.472	45.47	1	157560			4969	5772	2880	2930	3935	3935		588			-0.04329004656597135
FAMEIDPSL	9	Oxidation (M)	_FAM(Oxidation (M))EIDPSL_		FAM(1)EIDPSL		FAM(61)EIDPSL	0	0	1		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4812244360999	1	1038.48122	1037.47395	1.6072	0.001669	0.26872	0.00027906	1.8759	0.0019481	1038.48204938796	24.936	0.21713	24.924	24.827	25.044	-0.012392	198	115	1.5015416	0.067438245	1.5000222	304.71075	0	13.685364						558	10	4	NaN	NaN	NaN	0.028349	1	9888	9888		61.271	24.685	1	149140			4970	5772	2880	2930	3936	3936		588			-0.04329004656597135
FANEEGEAQKF	11	Unmodified	_FANEEGEAQKF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.290942008	2	635.290942	1268.56733	2.1443	0.0013622	-1.4057	-0.000893	0.73859	0.00046922	635.2909384598306	16.611	0.11997	16.598	16.574	16.693	-0.012993	1200	34	0.89836043	0.020226836	0.896841	363.73624	0	8.189636						77	6	2	NaN	NaN	NaN	0.12028	1	17388	17388		37.743	20.544	1	6909.5			4971	4616	2881	2931	3937	3937					-0.05620988949817729
FANEEGEAQKF	11	Unmodified						0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	635.290942	1268.56733	1.9007	0.0012075	-2.884	-0.0018322	-0.98338	-0.00062473	635.2894361101426	16.614	0.09598	16.614	16.59	16.686	0	1200	31	0.89836043	0.018385053	0.89836043	363.73624		7.4439087	0.0080615	-0.0010139	0.00075972	NaN	37.743	72	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4701.7			4972	4616	2881	2931							-0.05620988949817729
FANNYSFNFL	10	Unmodified	_FANNYSFNFL_					0	0	0		tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.8609842975667	3	412.860984	1235.56112	1.3497	0.00055723	2.4866	0.0010266	3.8363	0.0015839	412.8615081190202	23.995	0.096485	23.995	23.971	24.068	0	1467	58	0.7339432	0.03526789	0.7339432	445.87244	0	21.425354						140	5	4	NaN	NaN	NaN	0.65442	1	17415	17415		6.1406	1.1237	1	13719			4973	13839	2882	2932	3938	3938					-0.047234623906661
FANVEEHSF	9	Unmodified	_FANVEEHSF_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2432635339001	2	540.243264	1078.47197	2.3626	0.0012764	-1.7065	-0.00092193	0.6561	0.00035446	540.2417776879252	18.556	0.14392	18.556	18.532	18.676	0	1260	73	0.8615505	0.044243515	0.8615505	349.49365	0	17.947662						246	7	4	NaN	NaN	NaN	0.048656	1	11894	11894		47.482	15.806	1	32675			4974	307	2883	2933	3939	3939					-0.06412297350175322
FANVEEHSF	9	Unmodified	_FANVEEHSF_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2432635339001	2	540.243264	1078.47197	1.757	0.00094919	-0.49363	-0.00026668	1.2633	0.00068251	540.2432675273419	18.578	0.16794	18.564	18.54	18.708	-0.01395	1260	73	0.8615505	0.044233978	0.8600311	349.49365	0	17.943817						199	8	2	NaN	NaN	NaN	0.18779	1	11588	11588		26.115	9.5308	1	35312			4975	307	2883	2933	3940	3940					-0.06412297350175322
FANWRRQI	8	Unmodified	_FANWRRQI_					0	0	0		nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-3|FSHR	nc|ENSG00000170820|P23945-3|FSHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7988746361001	2	545.798875	1089.5832	1.9568	0.001068	-0.61555	-0.00033596	1.3413	0.00073208	545.7986927090737	25.708	0.024124	25.708	25.708	25.732	0	1215	31	0.8891654	0.018395007	0.8891654	360.6494	0	7.46109						38	2	2	NaN	NaN	NaN	0.80071	1	12384	12384		9.1232	1.5828	1	4053.6			4976	4746	2884	2934	3941	3941					0.04198806868407701
FAPGMSTF	8	Unmodified	_FAPGMSTF_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.3862018389	1	857.386202	856.378925	1.706	0.0014627	-3.5725	-0.003063	-1.8664	-0.0016003	857.3828210970757	30.415	0.072409	30.415	30.366	30.439	0	492	52	1.3267875	0.030471206	1.3267875	269.99344	0	6.2007446						98	4	3	NaN	NaN	NaN	0.82332	1	5482	5482		6.0903	0	1	10638			4977	4128	2885	2935	3942	3942					-0.0550089333712549
FAPGVPPG	8	Unmodified	_FAPGVPPG_					0	0	0		nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3930017763	1	741.393002	740.385725	1.1492	0.000852	4.2108	0.0031219	5.36	0.0039739	741.3958709609108	34.806	0.096539	34.806	34.782	34.879	0	570	73	1.2801172	0.04315853	1.2801172	261.1402	0	8.8042145						122	5	2	NaN	NaN	NaN	0.81214	1	3918	3918		7.5902	3.5366	1	8066.6			4978	3838;7965	2886	2936	3943	3943					0.005147876057549183
FAPGVPPG	8	Unmodified	_FAPGVPPG_					0	0	0		nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3930017763	1	741.393002	740.385725	1.5781	0.00117	4.9307	0.0036556	6.5087	0.0048255	741.396656419303	34.781	0.12052	34.78	34.756	34.877	-0.0006485	570	67	1.2801172	0.039557815	1.2785977	261.1402	0	8.069672						139	6	2	NaN	NaN	NaN	0.81214	1	3845	3845		7.5902	0	1	9203.4			4979	3838;7965	2886	2936	3944	3944					0.005147876057549183
FAPLPAGA	8	Unmodified	_FAPLPAGA_					0	0	0		nc|ENSG00000244274|Q9BQY9|DBNDD2;nc|ENSG00000244274|Q9BQY9-4|DBNDD2	nc|ENSG00000244274|Q9BQY9|DBNDD2	nc|ENSG00000244274|Q9BQY9|DBNDD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.4086518404999	1	743.408652	742.401375	-0.20106	-0.00014947	3.4861	0.0025916	3.2851	0.0024421	743.4140753813805	55.747	0.16848	55.746	55.65	55.818	-0.00059128	477	76	1.3357477	0.044801235	1.3342283	272.47522	0	9.138855						377	8	5	NaN	NaN	NaN	0.83849	1	3873	3873		4.0537	0.90034	1	45550			4980	8048	2887	2937	3945	3945					0.019870741227919098
FAQDRDPRF	9	Unmodified	_FAQDRDPRF_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.28325436165	2	576.283254	1150.55196	1.5619	0.00090008	-2.0122	-0.0011596	-0.45036	-0.00025953	576.2820868355814	14.933	0.26423	14.933	14.885	15.15	0	1218	94	0.8873258	0.057052255	0.8873258	359.665	0	23.125305						378	12	3	NaN	NaN	NaN	0.41766	1	14828	14828		13.003	0.41496	1	40375			4981	3423	2888	2938	3946	3946					-0.01729810956339861
FAQLASFSI	9	Unmodified	_FAQLASFSI_					0	0	0			REV__chr3:12840677-12841494|195|13.52|0.61|4.48|-|0|None,RPL32|1	REV__chr3:12840677-12841494|195|13.52|0.61|4.48|-|0|None,RPL32|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.26346765975	2	492.263468	982.512382	1.4167	0.00069738	-2.3464	-0.0011551	-0.92978	-0.00045769	492.26208768555426	20.935	0.096294	20.935	20.887	20.983	0	1317	55	0.8265074	0.033236563	0.8265074	335.69083	0	13.499207						130	5	3	NaN	NaN	NaN	0.49999	1	7968	7968		9.6116	0.48844	1	13525	+		4982	8228	2889	2939	3947	3947					0.02042669040235978
FAQLASFSI	9	Unmodified						0	0	0			REV__chr3:12840677-12841494|195|13.52|0.61|4.48|-|0|None,RPL32|1	REV__chr3:12840677-12841494|195|13.52|0.61|4.48|-|0|None,RPL32|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.263468	982.512382	1.4167	0.00069738	-2.3464	-0.0011551	-0.92978	-0.00045769	492.26208768555426	20.935	0.096294	20.935	20.887	20.983	0	1317	55	0.8265074	0.033236563	0.8265074	335.69083		13.499207	0.0069345	-0.0015687	0.00075972	NaN	9.6116	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13525	+		4983	8228	2889	2939							0.02042669040235978
FARGSSGG	8	Unmodified	_FARGSSGG_					0	0	0		ENST00000606173.1_1_1:247374027-247374126:-|nuORF	ENST00000606173.1_1_1:247374027-247374126:-|nuORF	ENST00000606173.1_1_1:247374027-247374126:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3529278756001	1	738.352928	737.345651	1.8983	0.0014016	-1.3488	-0.00099591	0.54944	0.00040568	738.3547134335524	23.345	0.072384	23.345	23.32	23.393	0	615	40	1.2531329	0.023403764	1.2531329	255.6547	0	4.774643						65	4	2	NaN	NaN	NaN	0.84692	1	3873	3873		1.4396	0	1	3855.6			4984	7782	2890	2940	3948	3948					-0.03352759064807742
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		ENSG00000136738|ENST00000377524|STAM;nc|ENSG00000136738|Q92783-2|STAM	ENSG00000136738|ENST00000377524|STAM	ENSG00000136738|ENST00000377524|STAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4938380329	1	965.493838	964.486562	1.1855	0.0011446	-0.27353	-0.00026409	0.912	0.00088053	965.4930566941008	24.719	0.096508	24.707	24.682	24.779	-0.012392	312	52	1.433996	0.030277252	1.4324765	291.29233	0	6.150299						151	5	3	NaN	NaN	NaN	0.12328	1	7312	7312		32.453	9.1183	1	15303			4985	3037	2891	2941	3949	3949					0.002897747979545784
FASGTGSS	8	Unmodified	_FASGTGSS_					0	0	0			REV__ENST00000256854.9_1_18:55289114-55289363:-|nuORF	REV__ENST00000256854.9_1_18:55289114-55289363:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.3100600079001	1	713.31006	712.302784	0.71411	0.00050938	4.2815	0.003054	4.9956	0.0035634	713.3140131161948	35.215	0.16901	35.215	35.167	35.336	-4.5776E-05	705	94	1.1990347	0.05600047	1.1975152	244.77484	0	11.432114						340	8	4	NaN	NaN	NaN	0.84727	1	3400	3400		1.2418	0.84618	1	37178	+		4986	11528	2892	2942	3950	3950					-0.06487573912886546
FASLDLVL	8	Unmodified	_FASLDLVL_					0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.5029461562	1	877.502946	876.49567	0.66261	0.00058144	1.5223	0.0013358	2.1849	0.0019172	877.5036147124116	33.358	0.096508	33.355	33.307	33.403	-0.0024796	351	49	1.4108255	0.028534174	1.409306	286.9905	0	5.804413						114	5	3	NaN	NaN	NaN	0.13697	1	5633	5633		56.971	15.516	1	10754			4987	2590	2893	2943	3951	3951					0.05248168154275845
FASLDLVL	8	Unmodified						0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	877.502946	876.49567	0.86343	0.00075766	-0.90228	-0.00079175	-0.038848	-3.409E-05	877.5020237625613	33.359	0.096531	33.359	33.311	33.407	0	351	52	1.4108255	0.030322313	1.4108255	286.9905		6.1681824	0.0019127	-0.00067091	0.00075972	NaN	56.971	126	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13047			4988	2590	2893	2943							0.05248168154275845
FASLPDPVL	9	Unmodified	_FASLPDPVL_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5244098797999	1	958.52441	957.517133	1.6919	0.0016217	-1.0226	-0.0009802	0.66929	0.00064153	958.5241023365919	30.198	0.12065	30.198	30.173	30.294	0	306	106	1.4375578	0.062282562	1.4375578	292.0458	0	12.652954						302	6	3	NaN	NaN	NaN	0.00050979	1	7278	7278		115.51	68.469	1	54712			4989	1031	2894	2944	3952	3952					0.036675531829814645
FASLPDPVL	9	Unmodified	_FASLPDPVL_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.5244098797999	1	958.52441	957.517133	1.2643	0.0012119	-0.51914	-0.00049761	0.74517	0.00071427	958.5237742337521	30.197	0.12066	30.19	30.166	30.287	-0.0064106	300	91	1.4411188	0.053399324	1.4395994	292.76926	0	10.848267						238	6	2	NaN	NaN	NaN	0.00020136	1	7142	7142		116.74	63.978	1	52294			4990	1031	2894	2944	3953	3953					0.036675531829814645
FASLPQVER	9	Unmodified	_FASLPQVER_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000514319.5_1_4:10110004-10118075:-|nuORF;ENST00000509600.1_1_4:10117520-10118290:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.78509855885	2	523.785099	1045.55564	1.5986	0.00083733	-7.6307	-0.0039969	-6.0321	-0.0031595	523.7807209338298	19.564	0.16803	19.564	19.516	19.684	0	1290	100	0.84311575	0.06086451	0.84311575	342.15125	0	24.69986						249	8	3	NaN	NaN	NaN	0.032689	1	10453	10453		55.592	16.133	1	36149			4991	774	2895	2945	3954	3954					0.03468858817495857
FASSFKIVL	9	Unmodified	_FASSFKIVL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.2973104771	2	506.29731	1010.58007	1.5427	0.00078108	-1.8612	-0.00094232	-0.31846	-0.00016124	506.296063018334	27.06	0.096586	27.06	27.036	27.133	0	1287	55	0.8449601	0.03320414	0.8449601	343.0539	0	13.480896						199	5	4	NaN	NaN	NaN	0.04743	1	9009	9009		48.002	18.404	1	63399			4992	5389	2896	2946	3955	3955					0.07520118971035572
FASSFKIVL	9	Unmodified	_FASSFKIVL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2973104771	2	506.29731	1010.58007	0.99314	0.00050283	-1.8022	-0.00091243	-0.80902	-0.0004096	506.2959468698627	27.084	0.16893	27.074	27.025	27.194	-0.010124	1287	52	0.8449601	0.031357765	0.84344065	343.0539	0	12.731262						244	8	4	NaN	NaN	NaN	0.010404	1	8833	8833		91.563	52.105	1	57881			4993	5389	2896	2946	3956	3956					0.07520118971035572
FASSIVLIL	9	Unmodified	_FASSIVLIL_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5920955145001	1	962.592096	961.584819	0.61643	0.00059337	-0.51341	-0.0004942	0.10303	9.9174E-05	962.5911115183749	35.337	0.096485	35.337	35.289	35.385	0	210	61	1.4944444	0.03550136	1.4944444	303.58435	0	7.211792						94	5	2	NaN	NaN	NaN	0.02781	1	7384	7384		61.977	14.937	1	9537.6			4994	4751	2897	2947	3957	3957					0.10249003113801791
FASVPEPEF	9	Unmodified	_FASVPEPEF_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.4829389956001	1	1022.48294	1021.47566	2.3721	0.0024255	-0.27889	-0.00028516	2.0933	0.0021403	1022.4834579515625	26.601	0.12069	26.601	26.577	26.698	0	246	76	1.4731345	0.04444039	1.4731345	299.00748	0	9.020203						161	6	2	NaN	NaN	NaN	0.074859	1	9427	9427		39.459	20.34	1	15821			4995	382	2898	2948	3958	3958					-0.034216275763242265
FASVPEPEF	9	Unmodified	_FASVPEPEF_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.4829389956001	1	1022.48294	1021.47566	1.4351	0.0014673	0.54027	0.00055242	1.9753	0.0020197	1022.4844269619207	26.625	0.12063	26.614	26.566	26.687	-0.010643	249	85	1.4713576	0.04974401	1.4698381	298.6468	0	10.096741						183	6	2	NaN	NaN	NaN	0.31737	1	9233	9233		17.799	8.6758	1	17779			4996	382	2898	2948	3959	3959					-0.034216275763242265
FATFLPYR	8	Unmodified	_FATFLPYR_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.540728646	1	1014.54073	1013.53345	1.7166	0.0017415	2.3299	0.0023637	4.0464	0.0041053	1014.5449923450459	36.059	0.16875	36.06	35.988	36.157	0.0011024	147	55	1.5316714	0.03188014	1.530152	310.92133	0	6.4714966						109	8	2	NaN	NaN	NaN	0.80071	1	8952	8952		9.1232	2.3292	1	9100.6	+		4997	9703	2899	2949	3960	3960					0.027226791397538364
FATLVDVVV	9	Unmodified	_FATLVDVVV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5557100082001	1	962.55571	961.548434	1.7145	0.0016503	0.48351	0.00046541	2.198	0.0021157	962.5563234354933	32.249	0.38607	32.249	32.177	32.563	0	249	184	1.4713576	0.108584404	1.4713576	298.8946	0	22.058075						998	17	5	NaN	NaN	NaN	0.014943	1	7381	7381		78.398	39.48	1	616480			4998	1065	2900	2950	3961	3961					0.06612126217089553
FATLVDVVV	9	Unmodified	_FATLVDVVV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5557100082001	1	962.55571	961.548434	1.5422	0.0014844	0.21719	0.00020906	1.7594	0.0016935	962.5559530115781	32.224	0.24132	32.22	32.172	32.413	-0.0037613	246	190	1.4731345	0.11214459	1.4716152	299.25558	0	22.78128						905	11	5	NaN	NaN	NaN	0.030391	1	7226	7226		58.599	27.038	1	624040			4999	1065	2900	2950	3962	3962					0.06612126217089553
FATRFDQVM	9	Unmodified	_FATRFDQVM_					0	0	0		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7711339038501	2	557.771134	1113.52771	1.5186	0.00084701	-3.2534	-0.0018146	-1.7348	-0.00096762	557.7699210104373	22.38	0.048243	22.38	22.356	22.405	0	1254	46	0.8652351	0.027629793	0.8652351	350.84894	0	11.203766						59	3	2	NaN	NaN	NaN	0.49999	1	13413	13413		9.6116	1.3668	1	8076.7			5000	5779	2901	2951	3963	3963					-0.024507874342134528
FATRFDQVM	9	Unmodified	_FATRFDQVM_					0	0	0		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7711339038501	2	557.771134	1113.52771	1.2526	0.00069867	0.58226	0.00032477	1.8349	0.0010234	557.7713956407334	22.404	0.12023	22.39	22.318	22.438	-0.013733	1248	49	0.8689189	0.029466987	0.86739945	352.34268	0	11.94873						108	6	3	NaN	NaN	NaN	0.31737	1	13034	13034		17.799	1.2148	1	12217			5001	5779	2901	2951	3964	3964					-0.024507874342134528
FATSLSIVL	9	Unmodified	_FATSLSIVL_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.5557100082002	1	950.55571	949.548434	1.5726	0.0014948	-0.38285	-0.00036392	1.1897	0.0011309	950.5552768166531	32.104	0.26542	32.104	32.056	32.321	0	213	130	1.4926696	0.07640493	1.4926696	303.2781	0	15.523804						574	12	4	NaN	NaN	NaN	0.030391	1	7085	7085		58.599	33.638	1	155990			5002	1363	2902	2952	3965	3965					0.07164126217105604
FATSLSIVL	9	Unmodified	_FATSLSIVL_					0	0	0		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.5557100082002	1	950.55571	949.548434	1.0927	0.0010387	-0.50815	-0.00048303	0.58459	0.00055568	950.5547172537406	32.103	0.26545	32.099	32.051	32.316	-0.0037575	210	124	1.4944444	0.0728358	1.4929249	303.6387	0	14.7986145						641	12	4	NaN	NaN	NaN	0.02781	1	6955	6955		61.977	23.059	1	155250			5003	1363	2902	2952	3966	3966					0.07164126217105604
FATSQEAFT	9	Unmodified	_FATSQEAFT_					0	0	0		ENST00000307363.9_1_3:33114069-33114204:-|nuORF	ENST00000307363.9_1_3:33114069-33114204:-|nuORF	ENST00000307363.9_1_3:33114069-33114204:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.23236449660004	2	501.232364	1000.45018	0.48925	0.00024523	-0.12337	-6.1838E-05	0.36587	0.00018339	501.73346061352305	33.454	0.14481	33.452	33.428	33.573	-0.0018501	1329	64	0.81912065	0.038799047	0.8176012	332.6083	0	15.754578						324	7	5	NaN	NaN	NaN	0.21199	1	8425	8425		24.562	2.727	1	40006			5004	6430	2903	2953	3967	3967					-0.05003102098748968
FATSTEPVL	9	Unmodified	_FATSTEPVL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.7722	0.0017093	-0.95127	-0.00091749	0.82091	0.00079176	964.4979924287371	23.73	0.14456	23.73	23.682	23.827	0	300	79	1.4411188	0.046303988	1.4411188	292.7435	0	9.406006						290	7	3	NaN	NaN	NaN	0.023074	1	7434	7434		68.108	20.787	1	37533			5005	331	2904	2954	3968	3968					0.008106589407248066
FATSTEPVL	9	Unmodified	_FATSTEPVL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	1.6559	0.0015971	-0.71973	-0.00069418	0.93615	0.00090292	964.4974404875617	23.754	0.12052	23.741	23.693	23.813	-0.013048	297	85	1.4428991	0.049865842	1.4413797	293.10513	0	10.129547						267	6	3	NaN	NaN	NaN	0.012648	1	7284	7284		84.879	53.318	1	35213			5006	331	2904	2954	3969	3969					0.008106589407248066
FATTLYEK	8	Unmodified	_FATTLYEK_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.75547545215	2	486.755475	971.496398	0.72278	0.00035182	-8.4092	-0.0040932	-7.6864	-0.0037414	486.7512457673537	33.454	0.12068	33.452	33.428	33.549	-0.0018501	1332	70	0.8172735	0.04247117	0.81575406	331.99243	0	17.252625						162	6	3	NaN	NaN	NaN	0.72043	1	7504	7504		17.78	2.7674	1	14363	+		5007	9818	2905	2955	3970	3970					0.009509628033356421
FAVDDGPSL	9	Unmodified	_FAVDDGPSL_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.435988803	1	920.435989	919.428712	1.3207	0.0012156	1.2285	0.0011308	2.5492	0.0023463	920.4378083863083	24.285	0.096533	24.285	24.261	24.357	0	420	73	1.3697531	0.042892337	1.3697531	278.43445	0	8.718903						119	5	2	NaN	NaN	NaN	0.074859	1	6397	6397		39.459	20.34	1	14292			5008	1951	2906	2956	3971	3971					-0.03422487127477325
FAVEDEALL	9	Unmodified	_FAVEDEALL_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5091537461	1	1006.50915	1005.50188	1.339	0.0013478	-0.57604	-0.00057979	0.763	0.00076796	1006.5088798175334	28.411	0.072407	28.402	28.378	28.45	-0.0089798	237	82	1.4784646	0.047944546	1.4769452	300.1528	0	9.733551						114	4	2	NaN	NaN	NaN	0.078597	1	8625	8625		38.918	9.3195	1	13868			5009	2484	2907	2957	3972	3972					-0.0006535840486776578
FAVESEHDQAM	11	Unmodified	_FAVESEHDQAM_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.2691523209	2	632.269152	1262.52375	2.0761	0.0013126	-0.3957	-0.00025019	1.6804	0.0010624	632.2679495425681	17.114	0.096066	17.1	17.076	17.172	-0.013569	1179	34	0.9112251	0.020209372	0.90970564	368.96402	0	8.182983						67	5	2	NaN	NaN	NaN	0.73057	1	17261	17261		5.4499	2.2383	1	5046.4			5010	2627	2908	2958	3973	3973					-0.0970092171860415
FAVESEHDQAM	11	Unmodified						0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.269152	1262.52375	1.9331	0.0012222	-0.6766	-0.00042779	1.2565	0.00079442	632.2694361345884	17.093	0.072067	17.093	17.069	17.141	0	1182	34	0.9093879	0.020207167	0.9093879	368.2201		8.182068	-0.0035291	-0.00017059	-0.00015889	NaN	5.4499	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4028.2			5011	2627	2908	2958							-0.0970092171860415
FAVGIVIGR	9	Unmodified	_FAVGIVIGR_					0	0	0		FUBP1-USP33|2|fusion;FUBP1-USP33|1|fusion;FUBP1-USP33|3|fusion;ENST00000487406.2_1_9:133495824-133506568:+|nuORF;nc|ENSG00000107164|Q96I24-2|FUBP3;ENSG00000107164|ENST00000319725|FUBP3;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.289819796	2	466.28982	930.565087	1.4493	0.00067579	-3.8604	-0.0018001	-2.4111	-0.0011243	466.2872820520338	24.309	0.024137	24.296	24.296	24.32	-0.012749	1335	28	0.8154261	0.016626418	0.81390667	331.44522	0	6.758087						35	2	2	NaN	NaN	NaN	0.58159	1	6487	6487		6.2502	3.465	1	2649.1			5012	7804	2909	2959	3974	3974					0.09702671893705883
FAVGIVIGR	9	Unmodified						0	0	0		FUBP1-USP33|2|fusion;FUBP1-USP33|1|fusion;FUBP1-USP33|3|fusion;ENST00000487406.2_1_9:133495824-133506568:+|nuORF;nc|ENSG00000107164|Q96I24-2|FUBP3;ENSG00000107164|ENST00000319725|FUBP3;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	466.28982	930.565087	0.97945	0.00045671	-5.0023	-0.0023325	-4.0229	-0.0018758	466.2875308372793	24.285	0.048252	24.285	24.261	24.309	0	1335	31	0.8154261	0.018474758	0.8154261	331.44522		7.5093994	-0.0055563	-0.0004637	0.00075972	NaN	6.2502	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2979.9			5013	7804	2909	2959							0.09702671893705883
FAVLEDHTL	9	Unmodified	_FAVLEDHTL_					0	0	0		CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant;CCDC50|p.A43Hfs*25|1|0.22|ENSG00000152492|chr3:191358011-191358011|G/-|frameshift_variant;nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7716568326	2	522.771657	1043.52876	2.2017	0.001151	-0.14523	-7.5924E-05	2.0564	0.0010751	522.7709710268963	23.152	0.16879	23.152	23.103	23.272	0	1248	100	0.8689189	0.06082499	0.8689189	352.6315	0	24.684479						377	8	5	NaN	NaN	NaN	0.014943	1	10354	10354		78.398	25.64	1	192250			5014	81	2910	2960	3975	3975					0.008737502063240754
FAVLEDHTL	9	Unmodified	_FAVLEDHTL_					0	0	0		CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant;CCDC50|p.A43Hfs*25|1|0.22|ENSG00000152492|chr3:191358011-191358011|G/-|frameshift_variant;nc|ENSG00000152492|Q8IVM0|CCDC50;ENSG00000152492|ENST00000392455|CCDC50	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	CCDC50|p.R19G|1|0.5|ENSG00000152492|chr3:191357093-191357093|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7716568326	2	522.771657	1043.52876	1.952	0.0010204	-0.72311	-0.00037802	1.2289	0.00064242	522.7712428125653	23.175	0.19303	23.162	23.114	23.307	-0.013294	1248	91	0.8689189	0.055280566	0.86739945	352.6315	0	22.434387						359	9	5	NaN	NaN	NaN	0.011942	1	10149	10149		87.021	34.263	1	174210			5015	81	2910	2960	3976	3976					0.008737502063240754
FAVNMVKG	8	Unmodified	_FAVNMVKG_					0	0	0			REV__tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1	REV__tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4600354840002	1	865.460035	864.452759	0.92487	0.00080044	1.8092	0.0015658	2.734	0.0023662	865.461305362061	35.722	0.096405	35.722	35.698	35.794	0.00052643	411	43	1.3751161	0.02502048	1.3735967	279.78668	0	5.09079						91	5	2	NaN	NaN	NaN	0.79379	1	5450	5450		10.052	0	1	7949.4	+		5016	13567	2911	2961	3977	3977					0.015110748252141093
FAVQVVDML	9	Unmodified	_FAVQVVDML_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5386797355001	1	1021.53868	1020.5314	2.1028	0.0021481	-0.46365	-0.00047363	1.6392	0.0016745	1021.5371931888537	32.321	0.19304	32.321	32.201	32.394	0	180	73	1.5121819	0.042556405	1.5121819	306.93683	0	8.637939						263	9	3	NaN	NaN	NaN	0.12328	1	9390	9390		32.453	7.5516	1	32698			5017	5630	2912	2962	3978	3978					0.021958823396403204
FAVQVVDML	9	Unmodified	_FAVQVVDML_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5386797355001	1	1021.53868	1020.5314	1.1486	0.0011733	0.49349	0.00050412	1.6421	0.0016775	1021.5384248130108	32.32	0.19307	32.316	32.196	32.389	-0.0037613	180	70	1.5121819	0.040772438	1.5106624	306.93683	0	8.275848						238	9	2	NaN	NaN	NaN	0.12328	1	9202	9202		32.453	14.418	1	35227			5018	5630	2912	2962	3979	3979					0.021958823396403204
FAVQVVDML	9	Oxidation (M)	_FAVQVVDM(Oxidation (M))L_		FAVQVVDM(1)L		FAVQVVDM(96)L	0	0	1		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5335943576	1	1037.53359	1036.52632	1.7564	0.0018223	-1.2072	-0.0012525	0.54915	0.00056976	1037.5319628714117	28.315	0.14476	28.315	28.219	28.363	0	171	70	1.5174994	0.040763736	1.5174994	307.9528	0	8.272369						189	7	2	NaN	NaN	NaN	0.0084155	1	10067	10067		95.62	63.167	1	22612			5019	5630	2912	2963	3980	3980		574			0.009515784770201208
FAVQVVDML	9	Oxidation (M)	_FAVQVVDM(Oxidation (M))L_		FAVQVVDM(1)L		FAVQVVDM(43)L	0	0	1		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2704354121	2	519.270435	1036.52632	1.052	0.00054627	-1.3795	-0.00071635	-0.32752	-0.00017007	519.2697008648983	28.314	0.14475	28.305	28.233	28.378	-0.0089779	1296	49	0.8394264	0.029518008	0.83790696	340.6926	0	11.980286						181	7	3	NaN	NaN	NaN	0.059222	1	9855	9855		42.995	21.16	1	24104			5020	5630	2912	2963	3981	3981		574			0.009515784770201208
FAVTDELVF	9	Unmodified	_FAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5298891882	1	1040.52989	1039.52261	1.4099	0.001467	4.9109	0.0051099	6.3208	0.0065769	1040.5344700852527	32.49	0.19303	32.49	32.442	32.635	0	153	103	1.5281296	0.060218096	1.5281296	310.09824	0	12.219849						427	9	3	NaN	NaN	NaN	0.056143	1	10197	10197		44.302	14.704	1	58046			5021	1356	2913	2964	3982	3982					0.004432319748275404
FAVTDELVF	9	Unmodified	_FAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5298891882	1	1040.52989	1039.52261	0.94885	0.00098731	2.7207	0.002831	3.6696	0.0038183	1040.5317593288116	32.489	0.21719	32.486	32.438	32.655	-0.0031013	150	97	1.5299006	0.05666983	1.5283811	310.45764	0	11.499817						437	10	3	NaN	NaN	NaN	0.094712	1	9980	9980		36.586	0	1	55065			5022	1356	2913	2964	3983	3983					0.004432319748275404
FAVTLETVL	9	Unmodified	_FAVTLETVL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	2.1906	0.0021743	-0.51256	-0.00050875	1.678	0.0016655	992.565737663757	32.37	0.28957	32.37	32.273	32.563	0	192	181	1.5050892	0.10657203	1.5050892	305.61615	0	21.640015						1224	13	5	NaN	NaN	NaN	0.014943	1	8290	8290		78.398	6.405	1	463870			5023	2893	2914	2965	3984	3984					0.062881088715244
FAVTLETVL	9	Unmodified						0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.566275	991.558998	1.7151	0.0017023	0.02576	2.5568E-05	1.7408	0.0017279	992.5665878732118	32.369	0.48267	32.365	32.244	32.727	-0.0037613	189	196	1.5068626	0.11547148	1.5053432	305.97626		23.447083	-0.0024316	0.00032849	0.00012701	NaN	78.398	1361	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478070			5024	2893	2914	2965							0.062881088715244
FAWLQIYSRC	10	Unmodified	_FAWLQIYSRC_					0	0	0			REV__CON__P00978	REV__CON__P00978	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.54986422329995	3	429.549864	1285.62776	0.95756	0.00041132	-3.3536	-0.0014405	-2.3961	-0.0010292	429.54849775513384	11.718	0.21615	11.71	11.662	11.878	-0.0081854	1446	55	0.7469324	0.03338456	0.74541295	453.56845	0	20.27246						173	10	2	NaN	NaN	NaN	0.76872	1	17702	17702		3.261	0	1	17160	+	+	5025	8257	2915	2966	3985	3985					-0.0036255010043078073
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2558395929001	2	546.25584	1090.49713	1.84	0.0010051	-0.2304	-0.00012586	1.6096	0.00087924	546.2558196845524	21.657	0.21685	21.657	21.609	21.826	0	1257	82	0.86339295	0.049765885	0.86339295	350.19232	0	20.185059						425	10	3	NaN	NaN	NaN	0.024359	1	12416	12416		66.481	34.92	1	215470			5026	5898	2916	2967	3986	3986					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5044027192	1	1091.5044	1090.49713	2.2526	0.0024587	-0.091088	-9.9423E-05	2.1615	0.0023593	1091.5047094945364	22.091	0.12064	22.091	22.043	22.163	0	141	55	1.5352125	0.031870008	1.5352125	311.34482	0	6.463318						111	6	2	NaN	NaN	NaN	0.030545	1	12417	12417		58.398	27.788	1	8714.4			5027	5898	2916	2967	3987	3987					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2558395929001	2	546.25584	1090.49713	2.1601	0.00118	0.13441	7.3421E-05	2.2945	0.0012534	546.2560171303606	22.091	0.43406	22.091	22.019	22.453	0	1254	103	0.8652351	0.06265801	0.8652351	350.9395	0	25.414124						949	19	5	NaN	NaN	NaN	0.019939	1	12419	12419		72.076	38.651	1	765590			5028	5898	2916	2967	3988	3988					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5044027192	1	1091.5044	1090.49713	1.4034	0.0015318	-2.3295	-0.0025427	-0.92617	-0.0010109	1092.5042251454245	22.091	0.072304	22.077	22.053	22.125	-0.013731	141	52	1.5352125	0.030097842	1.5336931	311.34482	0	6.1039124						79	4	2	NaN	NaN	NaN	0.21451	1	12105	12105		24.4	12.352	1	6099.1			5029	5898	2916	2967	3989	3989					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2558395929001	2	546.25584	1090.49713	1.945	0.0010625	-0.44818	-0.00024482	1.4968	0.00081766	546.2555461730103	22.091	0.40959	22.077	22.029	22.438	-0.013731	1254	94	0.8652351	0.05713862	0.86371565	350.9395	0	23.175415						943	18	6	NaN	NaN	NaN	0.015029	1	12107	12107		78.289	44.591	1	799090			5030	5898	2916	2967	3990	3990					-0.04450242547613925
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2558395929001	2	546.25584	1090.49713	1.8143	0.0009911	-0.26852	-0.00014668	1.5458	0.00084441	546.2558149317118	21.657	0.19247	21.643	21.595	21.788	-0.013897	1257	85	0.86339295	0.051606297	0.8618735	350.19232	0	20.931519						411	9	3	NaN	NaN	NaN	0.032409	1	12108	12108		55.958	22.26	1	213520			5031	5898	2916	2967	3991	3991					-0.04450242547613925
FAYHFTVFVFH	11	Unmodified	_FAYHFTVFVFH_					0	0	0		MAL2|p.Y113H|1|0.32|ENSG00000147676|chr8:119240198-119240198|T/C|missense_variant	MAL2|p.Y113H|1|0.32|ENSG00000147676|chr8:119240198-119240198|T/C|missense_variant	MAL2|p.Y113H|1|0.32|ENSG00000147676|chr8:119240198-119240198|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.85077282085	2	707.850773	1413.68699	1.5577	0.0011026	-5.425	-0.0038401	-3.8673	-0.0027374	707.8469529705991	22.838	0.048122	22.824	22.8	22.848	-0.01354	1047	37	0.99186665	0.02194339	0.9903472	401.1516	0	8.874817						52	3	2	NaN	NaN	NaN	0.76488	1	19219	19219		2.8895	0	1	4693.3			5032	7871	2917	2968	3992	3992					-0.0033033081458597735
FAYSAEVTL	9	Unmodified	_FAYSAEVTL_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4985890598001	1	1000.49859	999.491313	2.1437	0.0021447	-1.0954	-0.0010959	1.0483	0.0010488	1000.496312258799	26.432	0.072401	26.432	26.408	26.481	0	255	100	1.4678029	0.05863011	1.4678029	298.01254	0	11.903839						221	4	3	NaN	NaN	NaN	0.030391	1	8566	8566		58.599	33.638	1	39885			5033	4548	2918	2969	3993	3993					-0.00845341059277871
FCFCECCGRPN	11	Unmodified	_FCFCECCGRPN_					0	0	0			REV__LAMA1|p.S501C|1|0.23|ENSG00000101680|chr18:7038871-7038871|G/C|missense_variant	REV__LAMA1|p.S501C|1|0.23|ENSG00000101680|chr18:7038871-7038871|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.8222729922667	3	426.822273	1277.44499	1.9947	0.0008514	6.9843	0.0029811	8.979	0.0038325	427.1587060264921	29.087	0.048285	29.079	29.055	29.103	-0.0077229	1488	31	0.7209441	0.018577218	0.71942466	437.817	0	11.281586						36	3	2	NaN	NaN	NaN	0.76733	1	17544	17544		2.4611	0.95574	1	2109.6	+		5034	13052	2919	2970	3994	3994					-0.18263511820532585
FCHLDPCL	8	Unmodified	_FCHLDPCL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4113707318999	1	947.411371	946.404094	1.6641	0.0015766	3.8749	0.0036711	5.539	0.0052477	947.4151631115816	19.154	0.12015	19.14	19.116	19.236	-0.014141	348	43	1.412609	0.02496469	1.4110895	287.02512	0	5.0725403						126	6	3	NaN	NaN	NaN	0.69631	1	6848	6848		19.285	6.2819	1	10445			5035	5077	2920	2971	3995	3995					-0.07125161806220603
FCHRNGAQSC	10	Unmodified	_FCHRNGAQSC_					0	0	0			REV__nc|ENSG00000106351|O95081-2|AGFG2	REV__nc|ENSG00000106351|O95081-2|AGFG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7320171308501	2	561.732017	1121.44948	1.603	0.00090048	-11.313	-0.0063551	-9.7104	-0.0054546	561.7258043460371	27.035	0.09656	27.025	26.977	27.074	-0.010124	1248	43	0.8689189	0.0257864	0.86739945	352.3123	0	10.455383						66	5	2	NaN	NaN	NaN	0.77513	1	13319	13319		1.7022	0.26263	1	4369.1	+		5036	8987	2921	2972	3996	3996					-0.10638543291111091
FCLAFVAL	8	Unmodified	_FCLAFVAL_					0	0	0			REV__ENSG00000175591|ENST00000393597|P2RY2	REV__ENSG00000175591|ENST00000393597|P2RY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.4746229157	1	883.474623	882.467346	3.0562	0.0027	-4.7056	-0.0041573	-1.6494	-0.0014572	883.4708112053586	37.094	0.048222	37.096	37.072	37.121	0.0022507	345	31	1.4143922	0.017833829	1.4128729	287.686	0	3.6273804						24	3	2	NaN	NaN	NaN	0.71635	1	5710	5710		18.034	0	1	1247.1	+		5037	10731	2922	2973	3997	3997					0.021411469733379818
FCLFVCWF	8	Unmodified	_FCLFVCWF_					0	0	0		nc|ENSG00000205045|Q6IEE8|SLFN12L;ENSG00000205045|ENST00000628453|SLFN12L;nc|ENSG00000205045|Q6IEE8-2|SLFN12L	nc|ENSG00000205045|Q6IEE8|SLFN12L	nc|ENSG00000205045|Q6IEE8|SLFN12L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.7402595869	2	532.74026	1063.46597	1.3654	0.00072741	0.98803	0.00052636	2.3534	0.0012538	532.7427778550616	23.392	0.096525	23.379	23.355	23.451	-0.013296	1305	73	0.83389086	0.044277012	0.8323714	338.3335	0	17.964478						197	5	3	NaN	NaN	NaN	0.81214	1	11004	11004		7.5902	1.8961	1	27579			5038	5915	2923	2974	3998	3998					-0.06322810387064237
FCLRACPH	8	Unmodified	_FCLRACPH_					0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4385885354	1	946.438589	945.431312	1.2697	0.0012017	-5.4979	-0.0052034	-4.2282	-0.0040017	946.4335312803822	28.773	0.31373	28.765	28.62	28.933	-0.0083504	1287	91	0.8449601	0.055292487	0.84344065	171.68828	0	11.234924						437	14	2	NaN	NaN	NaN	0.84727	1	6808	6808		1.2418	0.31598	1	53589	+		5039	10385	2924	2975	3999	3999					-0.04358633475169427
FCLRACPH	8	Unmodified						0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	946.438589	945.431312	1.5943	0.0015089	-5.2747	-0.0049922	-3.6805	-0.0034833	946.4337397501487	28.798	0.28957	28.798	28.653	28.943	0	1290	70	0.84311575	0.042411506	0.84311575	171.3135		8.61763	0.01662	0.00011381	-0.00016247	NaN	1.2418	410	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37159	+		5040	10385	2924	2975							-0.04358633475169427
FCLRACPH	8	Unmodified						0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	946.438589	945.431312	1.2697	0.0012017	-5.4979	-0.0052034	-4.2282	-0.0040017	946.4335312803822	28.773	0.31373	28.765	28.62	28.933	-0.0083504	1287	91	0.8449601	0.055292487	0.84344065	171.68828		11.234924	-0.01662	-9.7365E-05	0.00016247	NaN	1.2418	437	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53589	+		5041	10385	2924	2975							-0.04358633475169427
FCTLPLPLHP	10	Unmodified	_FCTLPLPLHP_					0	0	0			REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3098949236	2	569.309895	1136.60524	1.0605	0.00060373	2.1599	0.0012297	3.2204	0.0018334	569.311592008233	33.961	0.072395	33.96	33.936	34.008	-0.0012474	1239	34	0.87444305	0.020253062	0.8729236	354.49466	0	8.21051						71	4	3	NaN	NaN	NaN	0.67523	1	13878	13878		9.746	3.4958	1	5318.3	+		5042	11536	2925	2976	4000	4000					0.042398505019491495
FCTLPLPLHP	10	Unmodified						0	0	0			REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.309895	1136.60524	1.0714	0.00060998	3.7259	0.0021212	4.7974	0.0027312	569.312103125767	33.962	0.048264	33.962	33.962	34.01	0	1242	40	0.87260187	0.023935497	0.87260187	353.74823		9.703308	0.0012319	0.00096433	-0.00016088	NaN	9.746	59	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4965.6	+		5043	11536	2925	2976							0.042398505019491495
FCTLPLPLHP	10	Unmodified						0	0	0			REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	REV__ENST00000259006.7_2_17:61775487-61775829:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.309895	1136.60524	1.0605	0.00060373	2.1599	0.0012297	3.2204	0.0018334	569.311592008233	33.961	0.072395	33.96	33.936	34.008	-0.0012474	1239	34	0.87444305	0.020253062	0.8729236	354.49466		8.21051	-0.0012319	-0.00081876	0.00016088	NaN	9.746	71	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5318.3	+		5044	11536	2925	2976							0.042398505019491495
FDAIYFHPSTF	11	Unmodified	_FDAIYFHPSTF_					0	0	0		nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10	nc|ENSG00000100429|Q969S8-4|HDAC10	nc|ENSG00000100429|Q969S8-4|HDAC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.8165956524999	2	672.816596	1343.61864	1.1522	0.00077524	0.58138	0.00039116	1.7336	0.0011664	672.8163718320113	20.549	0.096184	20.549	20.477	20.573	0	1104	52	0.9570911	0.031158626	0.9570911	387.28244	0	12.608215						69	5	2	NaN	NaN	NaN	0.7072	1	19469	19469		6.9844	0	1	5935.2			5045	1246	2926	2977	4001	4001					-0.03942620185125634
FDAPDPVM	8	Oxidation (M)	_FDAPDPVM(Oxidation (M))_		FDAPDPVM(1)		FDAPDPVM(50)	0	0	1		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	907.3865957694001	1	907.386596	906.379319	2.0415	0.0018525	0.18258	0.00016567	2.2241	0.0020181	907.3854385143281	21.176	0.096369	21.162	21.138	21.234	-0.014004	438	55	1.359022	0.032213926	1.3575026	276.31177	0	6.5496216						83	5	2	NaN	NaN	NaN	0.19946	1	6058	6058		50.033	26.182	1	5981			5046	5830	2927	2978	4002	4002		596			-0.0776151840792636
FDAVVSSMLS	10	Unmodified	_FDAVVSSMLS_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5077735376	1	1055.50777	1054.5005	1.0645	0.0011235	8.3173	0.008779	9.3817	0.0099025	1055.5153813476395	32.32	0.096542	32.316	32.292	32.389	-0.0037613	117	91	1.5493695	0.05307722	1.54785	314.34988	0	10.768768						150	5	2	NaN	NaN	NaN	0.47601	1	10603	10603		20.449	5.2733	1	29936	+		5047	9351	2928	2979	4003	4003					-0.024573157652412192
FDDEAPEELTF	11	Unmodified	_FDDEAPEELTF_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.7826154493999	2	656.782615	1311.55068	0.76843	0.00050469	-1.5467	-0.0010159	-0.77828	-0.00051116	656.7810575026285	35.119	0.16894	35.119	35.094	35.263	-4.5776E-05	1134	43	0.9387595	0.025678039	0.93724006	379.95923	0	10.393066						132	8	2	NaN	NaN	NaN	0.57804	1	18135	18135		15.463	0.28729	1	16700			5048	6027	2929	2980	4004	4004					-0.09263534626438741
FDEAFAEFQ	9	Unmodified	_FDEAFAEFQ_					0	0	0		ENST00000520779.1_1_8:2088796-2113099:+|nuORF;ENSG00000036448|ENST00000262113|MYOM2	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.23764683975	2	552.237647	1102.46074	1.3563	0.00074899	3.8417	0.0021215	5.1979	0.0028705	552.2392393087654	24.309	0.28943	24.309	24.285	24.574	0	1251	94	0.8670771	0.057101607	0.8670771	351.63898	0	23.157288						826	13	5	NaN	NaN	NaN	0.51576	1	12923	12923		8.962	1.3744	1	294610			5049	510	2930	2981	4005	4005					-0.08639119444342214
FDEAFAEFQ	9	Unmodified						0	0	0		ENST00000520779.1_1_8:2088796-2113099:+|nuORF;ENSG00000036448|ENST00000262113|MYOM2	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	ENST00000520779.1_1_8:2088796-2113099:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.237647	1102.46074	1.2883	0.00071146	3.2861	0.0018147	4.5745	0.0025262	552.2388665764086	24.623	0.048241	24.61	24.586	24.634	-0.012394	1251	46	0.8670771	0.027632773	0.8655577	351.63898		11.206329	0.15054	-0.00043701	-0.00075972	NaN	8.962	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10237			5050	510	2930	2981							-0.08639119444342214
FDEAKVVTI	9	Unmodified	_FDEAKVVTI_					0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5564382897002	1	1021.55644	1020.54916	2.1237	0.0021695	-1.3337	-0.0013624	0.79002	0.00080705	1021.556104429203	27.036	0.07242	27.036	27.012	27.084	0	183	61	1.510409	0.03544867	1.510409	306.5769	0	7.195221						124	4	3	NaN	NaN	NaN	0.33629	1	9393	9393		16.584	3.5813	1	11649	+		5051	8170	2931	2982	4006	4006					0.03970920866152028
FDEAKVVTI	9	Unmodified						0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1021.55644	1020.54916	2.1237	0.0021695	-1.3337	-0.0013624	0.79002	0.00080705	1021.556104429203	27.036	0.07242	27.036	27.012	27.084	0	183	61	1.510409	0.03544867	1.510409	306.5769		7.195221	0.005428	0.00046242	-0.00012673	NaN	16.584	124	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11649	+		5052	8170	2931	2982							0.03970920866152028
FDEAKVVTI	9	Unmodified						0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1021.55644	1020.54916	1.5518	0.0015852	-2.2933	-0.0023427	-0.74152	-0.0007575	1021.5537305359198	27.035	0.072433	27.025	27.001	27.074	-0.010124	180	64	1.5121819	0.037219167	1.5106624	306.93677		7.5545654	-0.005428	-0.00051786	0.00012673	NaN	16.584	109	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9031	+		5053	8170	2931	2982							0.03970920866152028
FDEELENHAAM	11	Unmodified	_FDEELENHAAM_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.2744346640501	2	653.274435	1304.53432	0.64885	0.00042387	5.5674	0.003637	6.2162	0.0040609	653.2789527992903	22.066	0.16858	22.053	21.956	22.125	-0.013731	1131	73	0.94059354	0.044038475	0.93907416	380.72284	0	17.825409						315	8	4	NaN	NaN	NaN	0.6085	1	18007	18007		13.463	2.2927	1	28802	+		5054	10403	2932	2983	4007	4007					-0.10576939064162616
FDEELENHAAM	11	Unmodified						0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	653.274435	1304.53432	0.64885	0.00042387	5.5674	0.003637	6.2162	0.0040609	653.2789527992903	22.066	0.16858	22.053	21.956	22.125	-0.013731	1131	73	0.94059354	0.044038475	0.93907416	380.72284		17.825409	-0.0070184	0.00019062	0.007497	NaN	13.463	315	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28802	+		5055	10403	2932	2983							-0.10576939064162616
FDEFLKMME	9	Unmodified	_FDEFLKMME_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2670354434	2	595.267035	1188.51952	1.3522	0.00080489	-7.0932	-0.0042223	-5.741	-0.0034174	595.7625025865824	28.363	0.12064	28.363	28.339	28.46	0	1185	70	0.90755045	0.042260528	0.90755045	367.7236	0	17.12323						211	6	3	NaN	NaN	NaN	0.49672	1	16100	16100		9.746	2.2056	1	16671			5056	1333	2933	2984	4008	4008					-0.06720102465874334
FDEFRSFFQF	10	Unmodified	_FDEFRSFFQF_					0	0	0		ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.2119055815666	3	457.211906	1368.61389	2.2541	0.0010306	-4.1847	-0.0019133	-1.9306	-0.00088271	457.21047429667584	15.508	0.071899	15.496	15.448	15.52	-0.012202	1431	34	0.75620437	0.020391703	0.7546849	458.90314	0	12.374725						44	4	2	NaN	NaN	NaN	0.77884	1	18856	18856		0.24776	0	1	2792.8			5057	3897	2934	2985	4009	4009					-0.05567504327882489
FDEGSDNYVI	10	Unmodified	_FDEGSDNYVI_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.75111835575	2	579.751118	1157.48768	1.5274	0.00088552	-11.266	-0.0065314	-9.7385	-0.0056459	579.7450593751453	34.734	0.096409	34.734	34.71	34.806	0	1212	49	0.8910048	0.02942884	0.8910048	361.13065	0	11.927704						107	5	3	NaN	NaN	NaN	0.68669	1	15053	15053		8.962	1.3744	1	10439	+		5058	12817	2935	2986	4010	4010					-0.08476055623805223
FDELFEQQES	10	Unmodified	_FDELFEQQES_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.2749575928001	2	636.274958	1270.53536	1.8598	0.0011834	5.5376	0.0035234	7.3974	0.0047068	636.2790454028261	19.66	0.16813	19.66	19.636	19.804	0	1161	49	0.9222442	0.02937162	0.9222442	373.40027	0	11.89209						162	8	3	NaN	NaN	NaN	0.66626	1	18236	18236		10.36	0.74852	1	15042	+		5059	9749	2936	2987	4011	4011					-0.08908401423605028
FDEPFSEFL	9	Unmodified	_FDEPFSEFL_					0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7556724174001	2	565.755672	1129.49679	0.92306	0.00052222	1.1626	0.00065775	2.0857	0.00118	565.7563821062395	35.12	0.14478	35.12	35.072	35.217	0	1254	43	0.8652351	0.025789201	0.8652351	350.78827	0	10.455566						127	7	2	NaN	NaN	NaN	0.45297	1	14050	14050		11.548	1.1883	1	21286	+		5060	11402	2937	2988	4012	4012					-0.06277662267461892
FDFLCMPV	8	Unmodified	_FDFLCMPV_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000556426.1_1_14:23397622-23398476:-|nuORF;ENST00000557015.1_1_14:23397622-23398591:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.4365228499	1	971.436523	970.429246	1.2612	0.0012251	-0.91308	-0.000887	0.34809	0.00033814	971.436242945706	29.256	0.096518	29.248	29.2	29.296	-0.0077229	270	43	1.458913	0.024898529	1.4573935	296.32825	0	5.0572815						96	5	2	NaN	NaN	NaN	0.80071	1	7465	7465		9.1232	2.873	1	9321.8			5061	1249	2938	2989	4013	4013					-0.057151070036297824
FDFLCMPV	8	Unmodified						0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000556426.1_1_14:23397622-23398476:-|nuORF;ENST00000557015.1_1_14:23397622-23398591:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	971.436523	970.429246	1.6241	0.0015777	-1.0852	-0.0010542	0.53894	0.00052355	971.4336796551333	29.232	0.072384	29.232	29.208	29.28	0	270	43	1.458913	0.024901152	1.458913	296.32825		5.0578003	-0.0078234	-9.7437E-05	0.00075972	NaN	9.1232	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7778.4			5062	1249	2938	2989							-0.057151070036297824
FDFNESYYAPF	11	Unmodified	_FDFNESYYAPF_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.2956930349001	2	700.295693	1398.57683	0.84666	0.00059291	-7.7928	-0.0054573	-6.9461	-0.0048644	700.7908503512347	24.43	0.072355	24.43	24.406	24.478	0	1050	40	0.9900381	0.023778379	0.9900381	400.454	0	9.617981						74	4	3	NaN	NaN	NaN	0.7072	1	20056	20056		6.9844	2.2553	1	4520.6			5063	13858	2939	2990	4014	4014					-0.10651220664271932
FDFSAVLYIL	10	Unmodified	_FDFSAVLYIL_					0	0	0			REV__tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	REV__tr|U7SKI4|U7SKI4_FUSNUMembraneiron-sulfurcontainingproteinFtrD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02003PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.32098253865	2	594.320983	1186.62741	0.79761	0.00047403	-3.9352	-0.0023388	-3.1376	-0.0018647	595.3207592129962	27.904	0.16896	27.895	27.798	27.967	-0.009552	1161	88	0.9222442	0.05324477	0.92072475	373.68408	0	21.57425						501	8	5	NaN	NaN	NaN	0.33935	1	15446	15446		26.115	0.314	1	75503	+		5064	13416	2940	2991	4015	4015					0.041563534513670675
FDHLVGGI	8	Unmodified	_FDHLVGGI_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4515792877002	1	857.451579	856.444303	1.4174	0.0012154	4.5601	0.0039101	5.9776	0.0051255	857.4553732183566	34.107	0.096573	34.107	34.059	34.155	0	513	40	1.3142352	0.023316503	1.3142352	267.43875	0	4.744751						70	5	2	NaN	NaN	NaN	0.82332	1	5487	5487		6.0903	0	1	4356.9		+	5065	208	2941	2992	4016	4016					0.010338441802446141
FDIFYEVWEKF	11	Unmodified	_FDIFYEVWEKF_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.8662854992999	2	761.866285	1521.71802	1.4175	0.0010799	-6.5255	-0.0049716	-5.108	-0.0038916	761.8608740293396	28.073	0.12066	28.064	28.016	28.137	-0.0089779	1005	43	1.0174452	0.025562048	1.0159258	411.21353	0	10.331238						93	6	2	NaN	NaN	NaN	0.76304	1	19620	19620		3.2116	0	1	9069.8			5066	4615	2942	2993	4017	4017					-0.021972222910335404
FDLDPVTPTAC	11	Unmodified	_FDLDPVTPTAC_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7735392070501	2	589.773539	1177.53253	1.342	0.0007915	3.2591	0.0019221	4.6011	0.0027136	589.775390198713	20.622	0.21677	20.622	20.525	20.742	0	1206	58	0.894683	0.034941077	0.894683	362.5487	0	14.159027						216	10	2	NaN	NaN	NaN	0.74155	1	15734	15734		4.7291	0	1	31093	+		5067	9900	2943	2994	4018	4018					-0.04913948082094066
FDLEKYNNE	9	Unmodified	_FDLEKYNNE_					0	0	0		tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.26693559545	2	586.266936	1170.51932	2.1349	0.0012516	-2.1991	-0.0012892	-0.064203	-3.764E-05	586.2652834399178	36.758	0.048073	36.759	36.735	36.783	0.0016747	1215	31	0.8891654	0.018391013	0.88764596	360.33783	0	7.4530334						40	3	2	NaN	NaN	NaN	0.51576	1	14957	14957		8.962	0.67169	1	2753			5068	13938	2944	2995	4019	4019					-0.05912062869856527
FDLPWGYW	8	Unmodified	_FDLPWGYW_					0	0	0			REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2503602845001	2	542.25036	1082.48617	1.3493	0.00073167	-6.7134	-0.0036403	-5.3641	-0.0029087	542.2467938588406	22.573	0.072361	22.559	22.511	22.583	-0.01354	1269	49	0.8560222	0.029489279	0.85450274	347.23483	0	11.961975						150	4	4	NaN	NaN	NaN	0.81807	1	11759	11759		6.794	0	1	12960	+		5069	12771	2945	2996	4020	4020					-0.051776001312418884
FDLPWGYW	8	Unmodified						0	0	0			REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.25036	1082.48617	1.6571	0.00089854	-4.3939	-0.0023826	-2.7368	-0.001484	542.2486641025245	22.549	0.096455	22.549	22.501	22.597	0	1272	49	0.854179	0.029492497	0.854179	346.48715		11.963257	-0.0050086	0.0013736	-0.00016187	NaN	6.794	117	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9506.4	+		5070	12771	2945	2996							-0.051776001312418884
FDLPWGYW	8	Unmodified						0	0	0			REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	REV__ENST00000557230.1_1_15:25222927-25225203:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.25036	1082.48617	1.3493	0.00073167	-6.7134	-0.0036403	-5.3641	-0.0029087	542.2467938588406	22.573	0.072361	22.559	22.511	22.583	-0.01354	1269	49	0.8560222	0.029489279	0.85450274	347.23483		11.961975	0.0050086	-0.0011419	0.00016187	NaN	6.794	150	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12960	+		5071	12771	2945	2996							-0.051776001312418884
FDLPYFFL	8	Unmodified	_FDLPYFFL_					0	0	0			REV__ENST00000450181.1_1_13:30870304-30870610:+|nuORF	REV__ENST00000450181.1_1_13:30870304-30870610:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5342462846	1	1061.53425	1060.52697	0.84511	0.00089711	3.7927	0.0040261	4.6378	0.0049232	1061.5372006675072	33.382	0.072403	33.38	33.38	33.452	-0.0018501	144	97	1.533442	0.05663371	1.5319226	311.09558	0	11.489502						160	4	2	NaN	NaN	NaN	0.80071	1	10875	10875		9.1232	0.16122	1	13526	+		5072	10389	2946	2997	4021	4021					-0.0008725881161808502
FDLTQVAAV	9	Unmodified	_FDLTQVAAV_					0	0	0		nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.514573475	1	963.514573	962.507297	1.3185	0.0012704	2.4795	0.002389	3.7979	0.0036594	963.5178980222245	30.269	0.096485	30.263	30.214	30.311	-0.0064106	276	52	1.4553556	0.03023541	1.4538362	295.63977	0	6.1419983						90	5	2	NaN	NaN	NaN	0.25448	1	7253	7253		21.835	2.7167	1	6161.1			5073	4560	2947	2998	4022	4022					0.02454365177618456
FDLYRNSIW	9	Unmodified	_FDLYRNSIW_					0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.30365545275	2	607.303655	1212.59276	1.0013	0.0006081	-8.89	-0.005399	-7.8887	-0.0047909	607.298948044931	24.213	0.072453	24.213	24.164	24.237	0	1107	55	0.9552588	0.032993257	0.9552588	386.966	0	13.365234						107	4	3	NaN	NaN	NaN	0.31737	1	16792	16792		17.799	7.194	1	7398.2	+		5074	9125	2948	2999	4023	4023					-0.005034696367374636
FDLYRNSIW	9	Unmodified						0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	607.303655	1212.59276	1.0013	0.0006081	-8.89	-0.005399	-7.8887	-0.0047909	607.298948044931	24.213	0.072453	24.213	24.164	24.237	0	1107	55	0.9552588	0.032993257	0.9552588	386.966		13.365234	0.12729	0.00033248	0.019103	NaN	17.799	107	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7398.2	+		5075	9125	2948	2999							-0.005034696367374636
FDLYRNSIW	9	Unmodified						0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	607.303655	1212.59276	1.2584	0.00076424	-9.6758	-0.0058761	-8.4174	-0.0051119	607.29731748881	23.971	0.024164	23.958	23.934	23.958	-0.01305	1167	40	0.91857195	0.023873508	0.9170525	372.10452		9.670929	-0.12729	-0.00062188	-0.019103	NaN	17.799	47	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8084.4	+		5076	9125	2948	2999							-0.005034696367374636
FDMRLKLFRSY	11	Unmodified	_FDMRLKLFRSY_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3950215365	2	738.395022	1474.77549	2.4756	0.001828	-8.445	-0.0062357	-5.9693	-0.0044077	738.38805860414	18.338	0.072075	18.324	18.3	18.372	-0.01395	1032	34	1.0010062	0.020102918	0.99948686	404.68558	0	8.127167						63	4	2	NaN	NaN	NaN	0.65755	1	19501	19501		10.244	1.3246	1	6268.3	+		5077	8234	2949	3000	4024	4024					0.05709341433566806
FDMRLKLFRSY	11	Unmodified						0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	738.395022	1474.77549	2.4756	0.001828	-8.445	-0.0062357	-5.9693	-0.0044077	738.38805860414	18.338	0.072075	18.324	18.3	18.372	-0.01395	1032	34	1.0010062	0.020102918	0.99948686	404.68558		8.127167	0.0035942	0.0011155	-0.00075972	NaN	10.244	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6268.3	+		5078	8234	2949	3000							0.05709341433566806
FDNFPQALL	9	Unmodified	_FDNFPQALL_					0	0	0		nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.77419952155	2	532.7742	1063.53385	1.3044	0.00069495	-7.5029	-0.0039974	-6.1985	-0.0033024	532.7701328411198	25.274	0.12061	25.262	25.189	25.31	-0.012011	1254	85	0.8652351	0.051600754	0.86371565	351.05054	0	20.935883						225	6	2	NaN	NaN	NaN	0.11656	1	11019	11019		33.425	0	1	55685			5079	3953	2950	3001	4025	4025					0.004620540689529662
FDNFSSLSIQ	10	Unmodified	_FDNFSSLSIQ_					0	0	0		ENST00000479519.5_1_3:13393312-13395748:-|nuORF;nc|ENSG00000132182|Q8TEM1-2|NUP210;ENSG00000132182|ENST00000254508|NUP210	ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENST00000479519.5_1_3:13393312-13395748:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2773033165001	2	579.277303	1156.54005	1.7467	0.0010118	-3.2559	-0.0018861	-1.5092	-0.00087426	579.2760264921878	23.682	0.16864	23.669	23.596	23.765	-0.013048	1227	61	0.88180584	0.03680992	0.8802864	357.40564	0	14.919464						216	8	2	NaN	NaN	NaN	0.65008	1	14531	14531		10.244	0	1	43897			5080	2744	2951	3002	4026	4026					-0.0319547249016523
FDPAFYEFYE	10	Unmodified	_FDPAFYEFYE_					0	0	0			REV__ENST00000491581.5_1_5:141004689-141007494:-|nuORF	REV__ENST00000491581.5_1_5:141004689-141007494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.27951165445	2	664.279512	1326.54447	2.1523	0.0014297	-0.60862	-0.00040429	1.5437	0.0010254	664.2802050030114	13.709	0.11989	13.699	13.651	13.77	-0.010672	1155	34	0.92591566	0.020191908	0.9243962	374.71655	0	8.171631						67	6	2	NaN	NaN	NaN	0.76548	1	18338	18338		3.5698	0	1	5036.6	+		5081	10631	2952	3003	4027	4027					-0.1057400806730584
FDQVRHDQ	8	Unmodified	_FDQVRHDQ_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7465047146001	2	522.746505	1043.47846	1.7711	0.00092582	8.0374	0.0042015	9.8085	0.0051274	522.7511362773269	23.609	0.21705	23.596	23.452	23.669	-0.013048	1284	91	0.8468043	0.055292487	0.8452849	343.65695	0	22.439209						214	10	2	NaN	NaN	NaN	0.72013	1	10145	10145		17.799	0.94067	1	31530	+		5082	10309	2953	3004	4028	4028					-0.04154359398808083
FDSALHAVYSP	11	Unmodified	_FDSALHAVYSP_					0	0	0			REV__SERPINE1|p.P201Sfs*23|1|0.11|ENSG00000106366|chr7:101131968-101131971|CTCC/-|frameshift_variant	REV__SERPINE1|p.P201Sfs*23|1|0.11|ENSG00000106366|chr7:101131968-101131971|CTCC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.7931205561999	2	603.793121	1205.57169	1.7818	0.0010758	-2.4635	-0.0014875	-0.68173	-0.00041163	603.7924097812993	17.693	0.071917	17.693	17.669	17.741	0	1155	37	0.92591566	0.02202636	0.92591566	375.10394	0	8.923248						53	4	2	NaN	NaN	NaN	0.6085	1	16621	16621		13.463	0	1	4515.9	+		5083	8988	2954	3005	4029	4029					-0.02287479736264686
FDSDIDIDD	9	Unmodified	_FDSDIDIDD_					0	0	0			REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7142015332	2	527.714202	1053.41385	1.9649	0.0010369	-4.1658	-0.0021984	-2.2009	-0.0011615	527.7123933797928	17.933	0.095959	17.933	17.909	18.005	0	1278	46	0.85049206	0.027656734	0.85049206	345.1112	0	11.222473						104	5	3	NaN	NaN	NaN	0.27442	1	10770	10770		20.555	4.1388	1	9439.2	+		5084	8440	2955	3006	4030	4030					-0.11072023786118734
FDSDIDIDD	9	Unmodified						0	0	0			REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.714202	1053.41385	1.9649	0.0010369	-4.1658	-0.0021984	-2.2009	-0.0011615	527.7123933797928	17.933	0.095959	17.933	17.909	18.005	0	1278	46	0.85049206	0.027656734	0.85049206	345.1112		11.222473	-0.0035673	-0.0013432	0.0016816	NaN	20.555	104	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9439.2	+		5085	8440	2955	3006							-0.11072023786118734
FDSDIDIDD	9	Unmodified						0	0	0			REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.714202	1053.41385	1.6916	0.00089266	-2.0547	-0.0010843	-0.36311	-0.00019162	527.7122466164487	17.954	0.095959	17.94	17.892	17.988	-0.013786	1281	52	0.84864825	0.031347692	0.8471288	344.36304		12.720184	0.0035673	0.00088498	-0.0016816	NaN	20.555	109	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12166	+		5086	8440	2955	3006							-0.11072023786118734
FDSDVGVYR	9	Unmodified	_FDSDVGVYR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.251088566	2	529.251089	1056.48762	2.412	0.0012765	-1.2938	-0.00068473	1.1182	0.00059181	529.2503410076953	17.957	0.26382	17.957	17.885	18.149	0	1284	88	0.8468043	0.05347544	0.8468043	343.60187	0	21.698334						509	12	4	NaN	NaN	NaN	2.6074E-07	1	10926	10926		131.88	87.239	1	190060			5087	5147	2956	3007	4031	4031					-0.03836010833151704
FDSDVGVYR	9	Unmodified	_FDSDVGVYR_					0	0	0		ENSG00000179344|ENST00000434651|HLA-DQB1;ENST00000487676.1_1_6:32632488-32634384:-|nuORF	ENSG00000179344|ENST00000434651|HLA-DQB1	ENSG00000179344|ENST00000434651|HLA-DQB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.251088566	2	529.251089	1056.48762	1.9236	0.0010181	-0.85552	-0.00045279	1.0681	0.00056528	529.2505069927131	17.978	0.26399	17.964	17.892	18.156	-0.013786	1284	85	0.8468043	0.051622987	0.8452849	343.60187	0	20.946716						524	12	5	NaN	NaN	NaN	2.6074E-07	1	10704	10704		131.88	87.239	1	200690			5088	5147	2956	3007	4032	4032					-0.03836010833151704
FDSEDSSCLPE	11	Unmodified	_FDSEDSSCLPE_					0	0	0		nc|ENSG00000173276|Q9ULJ3-2|ZBTB21;ENSG00000173276|ENST00000310826|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.737350666	2	614.737351	1227.46015	1.5522	0.00095419	-11.139	-0.0068478	-9.5872	-0.0058936	614.7303705572407	18.316	0.16793	18.316	18.221	18.388	0	1206	49	0.894683	0.029419243	0.894683	362.37793	0	11.9158325						134	8	2	NaN	NaN	NaN	0.73455	1	17169	17169		5.1889	1.9773	1	13041			5089	4884	2957	3008	4033	4033					-0.14448326946353518
FDSESRVY	8	Unmodified	_FDSESRVY_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.72998898315	2	501.729989	1001.44543	1.3251	0.00066483	-2.1058	-0.0010565	-0.78068	-0.00039169	501.729558085372	19.707	0.16846	19.693	19.597	19.765	-0.014141	1326	61	0.8209676	0.03693348	0.81944823	333.3538	0	14.996857						209	8	3	NaN	NaN	NaN	0.83582	1	8467	8467		4.4131	0.44458	1	37840	+		5090	8584	2958	3009	4034	4034					-0.055239862415191965
FDSLFGNLIAQ	11	Unmodified	_FDSLFGNLIAQ_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8165956525002	2	612.816596	1223.61864	1.26	0.00077212	-10.603	-0.006498	-9.3435	-0.0057258	612.8097921468275	20.477	0.072145	20.463	20.439	20.511	-0.014141	1125	31	0.9442611	0.018335521	0.94274163	382.47214	0	7.4267883						59	4	2	NaN	NaN	NaN	0.76654	1	16373	16373		2.5994	0.67481	1	4385.4	+		5091	9192	2959	3010	4035	4035					0.01577379814921187
FDSVNCVLN	9	Unmodified	_FDSVNCVLN_					0	0	0			REV__EPHA2|p.K754N|1|0.25|ENSG00000142627|chr1:16132127-16132127|C/A|missense_variant	REV__EPHA2|p.K754N|1|0.25|ENSG00000142627|chr1:16132127-16132127|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7342170813	2	505.734217	1009.45388	1.3723	0.000694	7.3204	0.0037022	8.6927	0.0043962	505.73788738180866	19.587	0.14447	19.573	19.524	19.669	-0.014141	1521	40	0.70049703	0.024180472	0.6989776	284.4061	0	9.817444						103	7	2	NaN	NaN	NaN	0.58159	1	8773	8773		6.2502	1.3405	1	11300	+		5092	12989	2960	3011	4036	4036					-0.05046755596549701
FDSVNCVLN	9	Unmodified						0	0	0			REV__EPHA2|p.K754N|1|0.25|ENSG00000142627|chr1:16132127-16132127|C/A|missense_variant	REV__EPHA2|p.K754N|1|0.25|ENSG00000142627|chr1:16132127-16132127|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.734217	1009.45388	1.3723	0.000694	7.3204	0.0037022	8.6927	0.0043962	505.73788738180866	19.587	0.14447	19.573	19.524	19.669	-0.014141	1521	40	0.70049703	0.024180472	0.6989776	284.4061		9.817444	0.02827	0.0005	0.0001703	NaN	6.2502	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11300	+		5093	12989	2960	3011							-0.05046755596549701
FDTAFDWI	8	Unmodified	_FDTAFDWI_					0	0	0		ENSG00000154485|ENST00000368808|MMP21	ENSG00000154485|ENST00000368808|MMP21	ENSG00000154485|ENST00000368808|MMP21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4567242451	1	1014.45672	1013.44945	1.4583	0.0014793	5.6083	0.0056894	7.0666	0.0071687	1014.4623077862981	30.221	0.072407	30.214	30.19	30.263	-0.0064106	195	52	1.5033154	0.030152082	1.501796	305.16556	0	6.1207275						107	4	3	NaN	NaN	NaN	0.62311	1	8933	8933		23.85	3.295	1	10263			5094	3848	2961	3012	4037	4037					-0.05673896747816798
FDTGVPGQ	8	Unmodified	_FDTGVPGQ_					0	0	0			REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.3835593020001	1	820.383559	819.376283	2.1049	0.0017268	4.2326	0.0034724	6.3375	0.0051991	820.3873113771647	26.505	0.096519	26.505	26.481	26.577	0	495	52	1.3249949	0.030474544	1.3249949	269.82092	0	6.2058105						105	5	2	NaN	NaN	NaN	0.78264	1	5010	5010		11.548	0	1	9603.4	+		5095	8395	2962	3013	4038	4038					-0.040630254704183244
FDTGVPGQ	8	Unmodified	_FDTGVPGQ_					0	0	0			REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.3835593020001	1	820.383559	819.376283	1.6185	0.0013278	3.7948	0.0031132	5.4133	0.004441	820.3868030209021	26.504	0.096527	26.494	26.47	26.566	-0.010645	495	46	1.3249949	0.026889324	1.3234755	269.82092	0	5.4757385						86	5	2	NaN	NaN	NaN	0.78264	1	4900	4900		11.548	0	1	7746.1	+		5096	8395	2962	3013	4039	4039					-0.040630254704183244
FDTGVPGQ	8	Unmodified						0	0	0			REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	820.383559	819.376283	2.1049	0.0017268	4.2326	0.0034724	6.3375	0.0051991	820.3873113771647	26.505	0.096519	26.505	26.481	26.577	0	495	52	1.3249949	0.030474544	1.3249949	269.82092		6.2058105	0.0054718	0.00016038	0.00075972	NaN	11.548	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9603.4	+		5097	8395	2962	3013							-0.040630254704183244
FDTGVPGQ	8	Unmodified						0	0	0			REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	REV__ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	820.383559	819.376283	1.6185	0.0013278	3.7948	0.0031132	5.4133	0.004441	820.3868030209021	26.504	0.096527	26.494	26.47	26.566	-0.010645	495	46	1.3249949	0.026889324	1.3234755	269.82092		5.4757385	-0.0054718	-0.00019878	-0.00075972	NaN	11.548	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7746.1	+		5098	8395	2962	3013							-0.040630254704183244
FDTIIRYSM	9	Unmodified	_FDTIIRYSM_					0	0	0			REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.28661679255	2	573.286617	1144.55868	1.4639	0.00083921	6.8112	0.0039048	8.2751	0.004744	573.290990771434	28.991	0.14483	28.991	28.943	29.087	0	1206	61	0.894683	0.036770105	0.894683	362.6696	0	14.905151						95	7	2	NaN	NaN	NaN	0.27608	1	14611	14611		20.449	6.4071	1	8282.8	+		5099	9092	2963	3014	4040	4040					-0.007816341199941235
FDVKKNHRLFH	11	Unmodified	_FDVKKNHRLFH_					0	0	0			REV__ENSG00000163945|ENST00000389851|UVSSA	REV__ENSG00000163945|ENST00000389851|UVSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.896577308	2	720.896577	1439.7786	1.086	0.00078292	-5.7997	-0.004181	-4.7137	-0.0033981	720.892748373784	30.487	0.19305	30.487	30.415	30.608	0	1008	43	1.0156195	0.025562048	1.0156195	410.68613	0	10.336548						166	9	3	NaN	NaN	NaN	0.54514	1	20325	20325		16.858	2.0043	1	10766	+		5100	10307	2964	3015	4041	4041					0.07630352602586754
FDVREIVNN	9	Unmodified	_FDVREIVNN_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5636489326	1	1105.56365	1104.55637	1.1374	0.0012574	-3.3707	-0.0037266	-2.2333	-0.0024691	1105.559967059024	32.924	0.04826	32.921	32.897	32.945	-0.0024757	144	106	1.533442	0.06191361	1.5319226	310.93628	0	12.55423						154	3	3	NaN	NaN	NaN	0.2961	1	12697	12697		19.164	1.3646	1	17067			5101	2724	2965	3016	4042	4042					0.008276534665810686
FDWMKVKRNP	10	Unmodified	_FDWMKVKRNP_					0	0	0		nc|ENSG00000105991|P49639-3|HOXA1;nc|ENSG00000120094|P14653-2|HOXB1;ENSG00000120094|ENST00000239174|HOXB1;nc|ENSG00000105991|P49639|HOXA1;ENSG00000105991|ENST00000643460|HOXA1	nc|ENSG00000105991|P49639-3|HOXA1	nc|ENSG00000105991|P49639-3|HOXA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.8477072031501	2	660.847707	1319.68086	0.76059	0.00050264	-1.6395	-0.0010835	-0.87891	-0.00058083	661.3482883437617	35.023	0.12064	35.023	34.999	35.12	0	1173	79	0.91489893	0.04774952	0.91489893	370.27795	0	19.325226						281	6	4	NaN	NaN	NaN	0.77594	1	19108	19108		1.5054	0	1	26150			5102	1583	2966	3017	4043	4043					0.03380827682258314
FDWSPVVT	8	Unmodified	_FDWSPVVT_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.461809623	1	950.46181	949.454533	1.3561	0.0012889	-1.6082	-0.0015286	-0.25212	-0.00023963	950.4611440746786	26.891	0.096529	26.88	26.856	26.952	-0.010643	321	70	1.4286518	0.04099822	1.4271324	290.27145	0	8.329956						127	5	2	NaN	NaN	NaN	0.82797	1	6935	6935		5.4659	1.0528	1	8010.4			5103	4505	2967	3018	4044	4044					-0.022215928851892386
FDYGIWWL	8	Unmodified	_FDYGIWWL_					0	0	0		ENST00000499023.6_1_4:155460308-155461126:-|nuORF	ENST00000499023.6_1_4:155460308-155461126:-|nuORF	ENST00000499023.6_1_4:155460308-155461126:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2660103487	2	550.26601	1098.51747	1.5512	0.00085358	-5.6309	-0.0030985	-4.0797	-0.0022449	550.2631666793172	30.125	0.14487	30.125	30.053	30.198	0	1344	40	0.8098828	0.024023652	0.8098828	328.45868	0	9.743103						103	7	2	NaN	NaN	NaN	0.84455	1	12776	12776		2.7852	0	1	10260			5104	7306	2968	3019	4045	4045					-0.02785027097161219
FDYGIWWL	8	Unmodified						0	0	0		ENST00000499023.6_1_4:155460308-155461126:-|nuORF	ENST00000499023.6_1_4:155460308-155461126:-|nuORF	ENST00000499023.6_1_4:155460308-155461126:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.26601	1098.51747	1.6952	0.0009328	-7.1787	-0.0039502	-5.4835	-0.0030174	550.2626612411703	29.979	0.048254	29.973	29.949	29.997	-0.0064087	1341	31	0.8117308	0.018478692	0.81021136	329.20816		7.4943237	-0.076089	-0.00091884	0.00016427	NaN	2.7852	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3458.4			5105	7306	2968	3019							-0.02785027097161219
FEAIEQKQR	9	Unmodified	_FEAIEQKQR_					0	0	0		nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-2|INF2	nc|ENSG00000203485|Q27J81-2|INF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.54013367716664	3	383.540134	1147.59857	1.6957	0.00065038	1.326	0.00050858	3.0218	0.001159	383.5408545454529	17.333	0.14386	17.333	17.309	17.453	0	1440	40	0.7506418	0.024109721	0.7506418	456.40225	0	14.659119						141	7	3	NaN	NaN	NaN	0.36492	1	14728	14728		9.6116	1.8077	1	15344			5106	5848	2969	3020	4046	4046					0.030676288749418745
FEAIESYSII	10	Unmodified	_FEAIESYSII_					0	0	0		ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.2977044076	2	586.297704	1170.58086	1.7788	0.0010429	0.1015	5.951E-05	1.8803	0.0011024	586.297788503892	29.594	0.048244	29.594	29.594	29.642	0	1146	43	0.93142134	0.025686324	0.93142134	377.462	0	10.409485						61	3	2	NaN	NaN	NaN	0.72631	1	15507	15507		6.2502	2.2817	1	4532.7			5107	2256	2970	3021	4047	4047					0.002388688294331587
FEAKNRQLLE	10	Unmodified	_FEAKNRQLLE_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.56293831589994	3	416.562938	1246.66699	1.7658	0.00073558	-2.6975	-0.0011237	-0.93162	-0.00038808	416.56176327733675	17.021	0.072029	17.021	16.997	17.069	0	1434	31	0.75435036	0.018538952	0.75435036	458.22485	0	11.261322						67	4	2	NaN	NaN	NaN	0.49667	1	17690	17690		19.592	10.65	1	6956.5			5108	3596	2971	3022	4048	4048					0.05351873454787892
FEAKNRQLLE	10	Unmodified						0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	416.562938	1246.66699	1.7391	0.00072445	-1.8672	-0.00077781	-0.12809	-5.3358E-05	416.5621490604297	17.114	0.096075	17.1	17.028	17.124	-0.013569	1434	37	0.75435036	0.022251546	0.7528309	458.22485		13.516541	0.039552	0.00058559	-0.00075972	NaN	19.592	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5965.7			5109	3596	2971	3022							0.05351873454787892
FEALAGLIV	9	Unmodified	_FEALAGLIV_					0	0	0			REV__ASTL|p.E122G|1|0.16|ENSG00000188886|chr2:96133515-96133515|T/C|missense_variant	REV__ASTL|p.E122G|1|0.16|ENSG00000188886|chr2:96133515-96133515|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5451453219002	1	932.545145	931.537869	1.3611	0.0012693	-3.7958	-0.0035397	-2.4347	-0.0022705	932.5439107476382	34.179	0.096466	34.179	34.155	34.252	0	312	49	1.433996	0.028497696	1.433996	291.4374	0	5.791748						136	5	3	NaN	NaN	NaN	0.094712	1	6642	6642		36.586	0.55016	1	12135	+		5110	8146	2972	3023	4049	4049					0.06936143562677444
FEALEDDEL	9	Unmodified	_FEALEDDEL_					0	0	0		ENSG00000100351|ENST00000344138|GRAP2;nc|ENSG00000100351|O75791-2|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7402193184499	2	540.740219	1079.46589	1.3282	0.00071823	-0.21647	-0.00011705	1.1118	0.00060118	541.241870087237	12.532	0.096009	12.532	12.508	12.604	0	1275	43	0.85233563	0.025800347	0.85233563	345.75156	0	10.465973						61	5	2	NaN	NaN	NaN	0.58159	1	11935	11935		6.2502	1.3405	1	3229.8			5111	1234	2973	3024	4050	4050					-0.07066860372401607
FEALVLVAM	9	Unmodified	_FEALVLVAM_					0	0	0		ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5485161403001	1	992.548516	991.54124	1.5489	0.0015373	2.2602	0.0022434	3.8091	0.0037807	992.5519137710379	34.879	0.048214	34.879	34.855	34.903	0	183	73	1.510409	0.042556405	1.510409	306.69644	0	8.641296						122	3	3	NaN	NaN	NaN	0.3389	1	8282	8282		16.417	0.95397	1	10997			5112	991	2974	3025	4051	4051					0.04513070345012693
FEASVGGG	8	Unmodified	_FEASVGGG_					0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3307954500002	1	723.330795	722.323519	1.1366	0.00082214	5.3706	0.0038847	6.5072	0.0047069	723.3346414110742	28.145	0.14483	28.137	28.112	28.257	-0.0089798	612	199	1.2549332	0.11876249	1.2534138	256.1191	0	24.238205						390	7	2	NaN	NaN	NaN	0.57691	1	3557	3557		26.732	2.8811	1	79079			5113	13875	2975	3026	4052	4052					-0.04874983533215982
FEASVGGG	8	Unmodified						0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	723.330795	722.323519	1.6567	0.0011983	7.0552	0.0051033	8.7119	0.0063016	723.3357951459283	28.122	0.048262	28.122	28.122	28.17	0	612	190	1.2549332	0.11335802	1.2549332	256.11908		23.135239	-0.0072062	0.00076374	0.00075972	NaN	26.732	287	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51839			5114	13875	2975	3026							-0.04874983533215982
FECKQLLFL	9	Unmodified	_FECKQLLFL_					0	0	0			REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF	REV__ENST00000483728.5_1_2:231265972-231267608:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8097277481	2	570.809728	1139.6049	1.4675	0.00083766	-8.1405	-0.0046467	-6.673	-0.003809	570.8056653685564	27.084	0.1931	27.084	27.012	27.205	0	1227	67	0.88180584	0.040495276	0.88180584	357.46826	0	16.416016						221	9	3	NaN	NaN	NaN	0.23112	1	14438	14438		23.334	2.8211	1	33976	+		5115	12401	2976	3027	4053	4053					0.0406843078210386
FEDRLRTNRR	10	Unmodified	_FEDRLRTNRR_					0	0	0			REV__ENST00000367095.7_1_1:207071131-207076401:+|nuORF	REV__ENST00000367095.7_1_1:207071131-207076401:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.9164860482	3	454.916486	1361.72763	1.3206	0.00060077	-6.7367	-0.0030646	-5.4161	-0.0024639	454.91346595742334	17.285	0.095823	17.285	17.261	17.357	0	1407	28	0.77102906	0.016671479	0.77102906	467.92316	0	10.117584						64	5	2	NaN	NaN	NaN	0.73114	1	19706	19706		3.0365	1.6525	1	5728.3	+		5116	11860	2977	3028	4054	4054					0.06123403557739948
FEEFIKQI	8	Unmodified	_FEEFIKQI_					0	0	0		tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5615236675999	1	1053.56152	1052.55425	-0.20171	-0.00021251	0.14013	0.00014764	-0.061579	-6.4877E-05	1053.5626499718287	55.194	0.1203	55.193	55.169	55.29	-0.0006218	60	91	1.582944	0.052998543	1.5814246	321.1695	0	10.753082						242	6	4	NaN	NaN	NaN	0.8439	1	10521	10521		3.1533	0	1	18595			5117	13932	2978	3029	4055	4055					0.030072247287534992
FEEIKEKDHQA	11	Unmodified	_FEEIKEKDHQA_					0	0	0		ENSG00000109771|ENST00000505916|LRP2BP;nc|ENSG00000109771|Q9P2M1-2|LRP2BP	ENSG00000109771|ENST00000505916|LRP2BP	ENSG00000109771|ENST00000505916|LRP2BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3384235168502	2	687.338424	1372.66229	2.1471	0.0014758	-4.5615	-0.0031353	-2.4144	-0.0016595	687.3358021850852	30.004	0.16895	30.004	29.908	30.077	0	1089	55	0.96624947	0.032954156	0.96624947	390.9041	0	13.331848						162	8	3	NaN	NaN	NaN	0.77168	1	19822	19822		1.6985	0.19308	1	13016			5118	1732	2979	3030	4056	4056					-0.009130554785997447
FEEPGLAG	8	Unmodified	_FEEPGLAG_					0	0	0			REV__ENST00000497637.5_1_19:39218501-39220069:+|nuORF	REV__ENST00000497637.5_1_19:39218501-39220069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.3883103289	1	819.38831	818.381034	2.0924	0.0017145	4.3014	0.0035245	6.3938	0.005239	819.3917618949969	30.222	0.12063	30.222	30.198	30.318	0	492	49	1.3267875	0.028674245	1.3267875	270.1914	0	5.839325						86	6	2	NaN	NaN	NaN	0.82332	1	4999	4999		6.0903	0	1	6259.6	+		5119	9484	2980	3031	4057	4057					-0.03542141327659465
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7554754521501	2	528.755475	1055.4964	1.677	0.00088672	-0.80919	-0.00042786	0.8678	0.00045885	528.7549892407219	34.71	0.28944	34.71	34.662	34.951	0	1278	70	0.85049206	0.042402327	0.85049206	345.10242	0	17.205505						371	13	3	NaN	NaN	NaN	0.035464	1	10876	10876		84.879	28.931	1	121650	+		5120	8527	2981	3032	4058	4058					-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5036744377	1	1056.50367	1055.4964	1.9903	0.0021028	1.2028	0.0012708	3.1931	0.0033735	1056.504513492031	34.71	0.16888	34.71	34.662	34.831	0	186	49	1.5086359	0.028379917	1.5086359	306.0818	0	5.757904						250	8	3	NaN	NaN	NaN	0.11528	1	10878	10878		61.271	5.7776	1	61893	+		5121	8527	2981	3032	4059	4059					-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7554754521501	2	528.755475	1055.4964	1.1454	0.00060564	-0.59468	-0.00031444	0.55073	0.0002912	528.754802665791	34.709	0.19282	34.708	34.66	34.853	-0.00064468	1278	85	0.85049206	0.051622987	0.8489726	345.10242	0	20.94696						447	9	4	NaN	NaN	NaN	0.087315	1	10647	10647		67.154	17.193	1	133960	+		5122	8527	2981	3032	4060	4060					-0.029130371966630264
FEFEPFLQ	8	Unmodified	_FEFEPFLQ_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5036744377	1	1056.50367	1055.4964	1.539	0.0016259	2.177	0.0023	3.716	0.003926	1056.505951195361	34.709	0.21691	34.708	34.66	34.877	-0.00064468	183	58	1.510409	0.033699393	1.5088896	306.44153	0	6.837158						306	10	4	NaN	NaN	NaN	0.3042	1	10648	10648		41.785	4.4821	1	60159	+		5123	8527	2981	3032	4061	4061					-0.029130371966630264
FEFEPFLQ	8	Unmodified						0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1056.50367	1055.4964	1.9903	0.0021028	1.2028	0.0012708	3.1931	0.0033735	1056.504513492031	34.71	0.16888	34.71	34.662	34.831	0	186	49	1.5086359	0.028379917	1.5086359	306.0818		5.757904	0.001023	-0.00051355	-0.00012683	NaN	61.271	250	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61893	+		5124	8527	2981	3032							-0.029130371966630264
FEFEPFLQ	8	Unmodified						0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.755475	1055.4964	1.677	0.00088672	-0.80919	-0.00042786	0.8678	0.00045885	528.7549892407219	34.71	0.28944	34.71	34.662	34.951	0	1278	70	0.85049206	0.042402327	0.85049206	345.10242		17.205505	0.001023	-4.7535E-05	0.00075972	NaN	84.879	371	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121650	+		5125	8527	2981	3032							-0.029130371966630264
FEFEPFLQ	8	Unmodified						0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.50367	1055.4964	1.539	0.0016259	2.177	0.0023	3.716	0.003926	1056.505951195361	34.709	0.21691	34.708	34.66	34.877	-0.00064468	183	58	1.510409	0.033699393	1.5088896	306.44153		6.837158	-0.001023	0.00051572	0.00012683	NaN	61.271	306	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60159	+		5126	8527	2981	3032							-0.029130371966630264
FEFEPFLQ	8	Unmodified						0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.755475	1055.4964	1.1454	0.00060564	-0.59468	-0.00031444	0.55073	0.0002912	528.754802665791	34.709	0.19282	34.708	34.66	34.853	-0.00064468	1278	85	0.85049206	0.051622987	0.8489726	345.10242		20.94696	-0.001023	0.00017931	-0.00075972	NaN	84.879	447	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133960	+		5127	8527	2981	3032							-0.029130371966630264
FEFSQFYL	8	Unmodified	_FEFSQFYL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5036744377	1	1080.50367	1079.4964	1.4296	0.0015447	-6.8639	-0.0074164	-5.4343	-0.0058717	1080.4987714004556	27.953	0.072403	27.953	27.905	27.977	0	126	49	1.544062	0.028310895	1.544062	313.1794	0	5.7422485						98	4	2	NaN	NaN	NaN	0.80692	1	11943	11943		8.2903	0.045466	1	10321			5128	1209	2982	3033	4062	4062					-0.04017037196649653
FEGLQLSFKN	10	Unmodified	_FEGLQLSFKN_					0	0	0		ENST00000413175.2_1_1:155403304-155403850:+|nuORF;nc|ENSG00000196767|P49335|POU3F4	ENST00000413175.2_1_1:155403304-155403850:+|nuORF	ENST00000413175.2_1_1:155403304-155403850:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8113133093501	2	591.811313	1181.60807	0.82754	0.00048975	0.86049	0.00050925	1.688	0.00099899	591.8123380675189	26.939	0.12065	26.928	26.88	27.001	-0.010645	1173	40	0.91489893	0.023876011	0.9133795	370.72592	0	9.674835						90	6	2	NaN	NaN	NaN	0.6772	1	15289	15289		9.6116	0	1	12963			5129	6871	2983	3034	4063	4063					0.024533971604796534
FEIGVVIV	8	Unmodified	_FEIGVVIV_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.26547903245	2	438.265479	874.516405	1.1905	0.00052175	-6.3744	-0.0027937	-5.184	-0.002272	438.263052615481	28.121	0.072393	28.112	28.088	28.161	-0.0089779	1380	34	0.7876915	0.020354152	0.78617203	320.47037	0	8.281036						62	4	2	NaN	NaN	NaN	0.82332	1	5601	5601		6.0903	0	1	5034.2			5130	827	2984	3035	4064	4064					0.07412758533951092
FEMDVFKEL	9	Unmodified	_FEMDVFKEL_					0	0	0			REV__ENST00000498732.5_1_X:139791961-139816057:+|nuORF	REV__ENST00000498732.5_1_X:139791961-139816057:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2810000984001	2	579.281	1156.54745	1.8849	0.0010919	-6.6454	-0.0038496	-4.7605	-0.0027577	579.7766706761672	23.682	0.072287	23.682	23.682	23.754	0	1233	61	0.87812483	0.03680587	0.87812483	355.9137	0	14.917816						164	4	3	NaN	NaN	NaN	0.44082	1	15033	15033		12.049	0.87837	1	23905	+		5131	12512	2985	3036	4065	4065					-0.024564562140994894
FEMDVFKEL	9	Unmodified						0	0	0			REV__ENST00000498732.5_1_X:139791961-139816057:+|nuORF	REV__ENST00000498732.5_1_X:139791961-139816057:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	579.281	1156.54745	1.8849	0.0010919	-6.6454	-0.0038496	-4.7605	-0.0027577	579.7766706761672	23.682	0.072287	23.682	23.682	23.754	0	1233	61	0.87812483	0.03680587	0.87812483	355.9137		14.917816	0.0066698	0.0017396	-0.0010808	NaN	12.049	164	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23905	+		5132	12512	2985	3036							-0.024564562140994894
FENIHWIIIVT	11	Unmodified	_FENIHWIIIVT_					0	0	0			REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8848126034501	2	692.884813	1383.75507	1.4895	0.0010321	-7.0708	-0.0048992	-5.5813	-0.0038672	692.8798541843935	32.321	0.16895	32.321	32.273	32.442	0	1056	112	0.9863805	0.06767708	0.9863805	399.0164	0	27.377136						655	8	5	NaN	NaN	NaN	0.18551	1	19927	19927		31.675	7.2752	1	151400	+		5133	12133	2986	3037	4066	4066					0.0785449404540941
FENIHWIIIVT	11	Unmodified						0	0	0			REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	692.884813	1383.75507	1.4895	0.0010321	-7.0708	-0.0048992	-5.5813	-0.0038672	692.8798541843935	32.321	0.16895	32.321	32.273	32.442	0	1056	112	0.9863805	0.06767708	0.9863805	399.0164		27.377136	0.0024224	-0.00029537	-0.00015474	NaN	31.675	655	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151400	+		5134	12133	2986	3037							0.0785449404540941
FENIHWIIIVT	11	Unmodified						0	0	0			REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	REV__ENST00000426851.6_1_7:148876917-148877028:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	692.884813	1383.75507	0.93018	0.00064451	-6.5812	-0.00456	-5.651	-0.0039155	692.8804152167899	32.32	0.16895	32.316	32.268	32.437	-0.0037613	1053	109	0.9882094	0.06584442	0.98669	399.75623		26.635803	-0.0024224	0.00038314	0.00015474	NaN	31.675	691	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157460	+		5135	12133	2986	3037							0.0785449404540941
FENLYIENL	9	Unmodified	_FENLYIENL_					0	0	0		nc|ENSG00000047056|Q9Y2I8-3|WDR37;ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	nc|ENSG00000047056|Q9Y2I8-3|WDR37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.790046551	2	577.790047	1153.56554	1.2525	0.0007237	-1.475	-0.00085223	-0.22246	-0.00012853	578.2904102195253	33.938	0.21724	33.938	33.89	34.107	0	1188	109	0.90571284	0.06618625	0.90571284	367.10657	0	26.826843						672	10	5	NaN	NaN	NaN	0.048656	1	14923	14923		47.482	0	1	138600			5136	543	2987	3038	4067	4067					-0.0050999796776523
FEPNLFESL	9	Unmodified	_FEPNLFESL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2714896571001	2	548.27149	1094.52843	0.94697	0.0005192	0.36847	0.00020202	1.3154	0.00072122	548.2716385545066	31.959	0.21724	31.959	31.887	32.104	0	1260	70	0.8615505	0.04237485	0.8615505	349.429	0	17.186462						255	10	3	NaN	NaN	NaN	0.19268	1	12601	12601		25.801	1.2389	1	33507	+		5137	13047	2988	3039	4068	4068					-0.015056695135172049
FEPNLFESL	9	Unmodified						0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.27149	1094.52843	0.94697	0.0005192	0.36847	0.00020202	1.3154	0.00072122	548.2716385545066	31.959	0.21724	31.959	31.887	32.104	0	1260	70	0.8615505	0.04237485	0.8615505	349.429		17.186462	0.0024245	0.00019954	-0.00016147	NaN	25.801	255	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33507	+		5138	13047	2988	3039							-0.015056695135172049
FEQFGSVS	8	Unmodified	_FEQFGSVS_					0	0	0			REV__PARD6A|p.D325Vfs*19|1|0.12|ENSG00000102981|chr16:67662579-67662580|-/TAGA|frameshift_variant	REV__PARD6A|p.D325Vfs*19|1|0.12|ENSG00000102981|chr16:67662579-67662580|-/TAGA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4097740525002	1	900.409774	899.402498	1.5672	0.0014112	3.8406	0.0034582	5.4079	0.0048693	900.4132933643818	32.441	0.45852	32.438	32.269	32.727	-0.0031052	363	112	1.4036897	0.06606603	1.4021703	285.42654	0	13.433868						868	20	4	NaN	NaN	NaN	0.65075	1	5934	5934		22.126	0	1	284450	+		5139	8901	2989	3040	4069	4069					-0.05122756298931108
FEQGFKPSLCR	11	Unmodified	_FEQGFKPSLCR_					0	0	0			REV__nc|ENSG00000289491|C0HLU2|ZNF689	REV__nc|ENSG00000289491|C0HLU2|ZNF689	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.3293472745	2	656.329347	1310.64414	0.87624	0.0005751	-4.9183	-0.0032281	-4.0421	-0.0026529	656.8287854929399	32.899	0.12061	32.897	32.849	32.969	-0.0024757	1122	58	0.9460945	0.034820557	0.9445751	382.9308	0	14.093597						172	6	3	NaN	NaN	NaN	0.64656	1	18120	18120		10.965	2.046	1	11398	+		5140	11620	2990	3041	4070	4070					0.0012453106567136274
FEREQNDTF	9	Unmodified	_FEREQNDTF_					0	0	0		nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2-4|LOXHD1	nc|ENSG00000167210|Q8IVV2-4|LOXHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.26218456855	2	593.262185	1184.50982	1.8734	0.0011114	-6.2066	-0.0036822	-4.3333	-0.0025708	593.2606200992651	28.001	0.19303	28.001	27.953	28.146	0	1230	112	0.8799654	0.06803584	0.8799654	356.56046	0	27.567993						717	9	5	NaN	NaN	NaN	0.2961	1	15988	15988		19.164	1.3646	1	287490			5141	4536	2991	3042	4071	4071					-0.07505831155390297
FEREQNDTF	9	Unmodified						0	0	0		nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2-4|LOXHD1	nc|ENSG00000167210|Q8IVV2-4|LOXHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.262185	1184.50982	1.1386	0.00067548	-5.9783	-0.0035467	-4.8397	-0.0028712	593.2606386270338	28.049	0.21717	28.04	27.968	28.185	-0.0089779	1230	109	0.8799654	0.0661934	0.878446	356.56046		26.821472	0.019265	0.00013345	-0.00075972	NaN	19.164	772	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278150			5142	4536	2991	3042							-0.07505831155390297
FESFAENNF	9	Unmodified	_FESFAENNF_					0	0	0		ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1	ENSG00000066336|ENST00000378538|SPI1	ENSG00000066336|ENST00000378538|SPI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7352713263	2	552.735271	1103.45599	1.2233	0.00067618	-1.9152	-0.0010586	-0.69185	-0.00038241	552.7341142230122	24.767	0.2654	24.755	24.682	24.948	-0.012392	1257	55	0.86339295	0.03316474	0.8618735	350.141	0	13.449646						251	12	3	NaN	NaN	NaN	0.51576	1	12625	12625		8.962	0	1	30803			5143	703	2992	3043	4072	4072					-0.09160003587089705
FESFAENNF	9	Unmodified						0	0	0		ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1	ENSG00000066336|ENST00000378538|SPI1	ENSG00000066336|ENST00000378538|SPI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.735271	1103.45599	1.1893	0.00065736	-2.9857	-0.0016503	-1.7964	-0.00099295	552.7338689740959	24.767	0.16891	24.767	24.695	24.864	0	1257	61	0.86339295	0.036849678	0.86339295	350.141		14.944031	0.0062738	-0.00058073	0.00075972	NaN	8.962	241	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32711			5144	703	2992	3043							-0.09160003587089705
FESFRAED	8	Unmodified	_FESFRAED_					0	0	0			REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4370514355	1	1000.43705	999.429775	1.0703	0.0010708	-5.6365	-0.0056389	-4.5661	-0.0045681	1000.4310185767998	31.501	0.096544	31.501	31.477	31.573	0	225	88	1.4855686	0.051523328	1.4855686	301.61984	0	10.460968						172	5	3	NaN	NaN	NaN	0.67593	1	8550	8550		20.555	2.7751	1	12455	+		5145	10488	2993	3044	4073	4073					-0.06996272758567557
FESFRAED	8	Unmodified						0	0	0			REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.43705	999.429775	1.0703	0.0010708	-5.6365	-0.0056389	-4.5661	-0.0045681	1000.4310185767998	31.501	0.096544	31.501	31.477	31.573	0	225	88	1.4855686	0.051523328	1.4855686	301.61984		10.460968	0.0027401	-3.389E-05	-0.0010157	NaN	20.555	172	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12455	+		5146	10488	2993	3044							-0.06996272758567557
FESFRAED	8	Unmodified						0	0	0			REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.43705	999.429775	0.95826	0.00095868	-5.5565	-0.0055589	-4.5982	-0.0046002	1000.4305769922818	31.5	0.096533	31.495	31.471	31.568	-0.0044174	219	79	1.4891195	0.046181083	1.4876001	302.3408		9.376282	-0.0027401	4.6101E-05	0.0010157	NaN	20.555	169	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12861	+		5147	10488	2993	3044							-0.06996272758567557
FESYIEEW	8	Unmodified	_FESYIEEW_					0	0	0			REV__ENSG00000159905|ENST00000587682|ZNF221	REV__ENSG00000159905|ENST00000587682|ZNF221	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.4727682398	1	1102.47277	1101.46549	2.26	0.0024916	1.8171	0.0020033	4.0771	0.0044948	1103.4773792421013	25.588	0.193	25.576	25.503	25.696	-0.0116	126	55	1.544062	0.031859875	1.5425426	313.10052	0	6.460449						154	9	2	NaN	NaN	NaN	0.67593	1	12552	12552		20.555	9.007	1	12387	+		5148	10188	2994	3045	4074	4074					-0.08118235301571985
FETAGLLL	8	Unmodified	_FETAGLLL_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.4872960920003	1	863.487296	862.48002	0.9247	0.00079847	0.076845	6.6355E-05	1.0015	0.00086482	863.4877369646512	31.669	0.12066	31.664	31.64	31.761	-0.0044155	384	34	1.3911947	0.01964128	1.3896753	283.06827	0	3.9964294						66	6	2	NaN	NaN	NaN	0.27293	1	5431	5431		44.247	0	1	4902.3	+		5149	10053	2995	3046	4075	4075					0.043278816372549045
FETAGLLL	8	Unmodified						0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	863.487296	862.48002	1.2275	0.00106	-0.25891	-0.00022356	0.96862	0.0008364	863.4869907684363	31.694	0.072428	31.694	31.646	31.718	0	387	46	1.389409	0.026789188	1.389409	282.7049		5.450836	0.014807	-0.0001637	-0.00013316	NaN	44.247	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5231	+		5150	10053	2995	3046							0.043278816372549045
FETAGLLL	8	Unmodified						0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	863.487296	862.48002	0.9247	0.00079847	0.076845	6.6355E-05	1.0015	0.00086482	863.4877369646512	31.669	0.12066	31.664	31.64	31.761	-0.0044155	384	34	1.3911947	0.01964128	1.3896753	283.06827		3.9964294	-0.014807	0.00012621	0.00013316	NaN	44.247	66	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4902.3	+		5151	10053	2995	3046							0.043278816372549045
FETKKYDLGFS	11	Unmodified	_FETKKYDLGFS_					0	0	0		tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.55908240279996	3	445.559082	1333.65542	1.5157	0.00067534	-6.3309	-0.0028208	-4.8152	-0.0021455	445.55572302265443	23.128	0.096458	23.128	23.103	23.2	0	1464	61	0.73579943	0.03713423	0.73579943	446.63724	0	22.540802						181	5	3	NaN	NaN	NaN	0.65577	1	19307	19307		4.9007	0	1	18884			5152	13907	2996	3047	4076	4076					0.0019363164078640693
FETSAGFG	8	Unmodified	_FETSAGFG_					0	0	0			REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.3570102005001	1	815.35701	814.349734	0.90033	0.00073409	5.5627	0.0045356	6.4631	0.0052697	815.3618097197769	31.741	0.14486	31.737	31.712	31.857	-0.0044155	534	58	1.3016734	0.034099817	1.300154	265.09872	0	6.9447327						126	7	2	NaN	NaN	NaN	0.76633	1	4836	4836		13.737	0	1	10470	+		5153	10080	2997	3048	4077	4077					-0.06486714361756185
FETVYHQPTM	10	Unmodified	_FETVYHQPTM_					0	0	0			REV__ALPK1|p.A1088P|1|0.21|ENSG00000073331|chr4:112438557-112438557|G/C|missense_variant	REV__ALPK1|p.A1088P|1|0.21|ENSG00000073331|chr4:112438557-112438557|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.7869809333	2	626.786981	1251.55941	1.591	0.00099722	4.166	0.0026112	5.757	0.0036084	627.2894318340428	27.881	0.09651	27.881	27.808	27.905	0	1155	70	0.92591566	0.04221493	0.92591566	374.94788	0	17.09488						130	5	2	NaN	NaN	NaN	0.77024	1	17809	17809		2.8895	0	1	16365	+		5154	8130	2998	3049	4078	4078					-0.05630839470950377
FEVATVPGLHG	11	Unmodified	_FEVATVPGLHG_					0	0	0			REV__ENST00000496752.1_1_6:170065563-170070787:-|nuORF	REV__ENST00000496752.1_1_6:170065563-170070787:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7982059341001	2	563.798206	1125.58186	1.2977	0.00073162	5.5752	0.0031433	6.8729	0.0038749	563.8013309049239	40.344	0.048058	40.344	40.32	40.368	0	1197	37	0.9001988	0.022062063	0.9001988	364.97873	0	8.944885						46	3	2	NaN	NaN	NaN	0.69801	1	13916	13916		7.5876	1.8934	1	2643	+		5155	10926	2999	3050	4079	4079					0.024091279889944417
FEVSRHLEFYL	11	Unmodified	_FEVSRHLEFYL_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3695266800001	2	720.369527	1438.7245	1.8143	0.0013069	-9.2919	-0.0066936	-7.4776	-0.0053866	720.3627829710514	25.033	0.096468	25.021	24.996	25.093	-0.012011	1026	31	1.0046607	0.018268526	1.0031413	406.2576	0	7.387268						55	5	2	NaN	NaN	NaN	0.67772	1	19355	19355		8.9191	1.2365	1	4816.6			5156	6073	3000	3051	4080	4080					0.02268715660397902
FEVSRHLEFYL	11	Unmodified						0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	720.369527	1438.7245	1.3931	0.0010035	-7.5695	-0.0054529	-6.1764	-0.0044493	720.3644605237282	25.033	0.072392	25.033	25.009	25.081	0	1020	52	1.0083145	0.031058133	1.0083145	407.73505		12.5590515	0.0061222	0.0014046	0.0025866	NaN	8.9191	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5321.9			5157	6073	3000	3051							0.02268715660397902
FEWFQQKA	8	Unmodified	_FEWFQQKA_					0	0	0			REV__ENST00000400566.5_1_21:15893501-15918613:-|nuORF	REV__ENST00000400566.5_1_21:15893501-15918613:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5258068633	1	1083.52581	1082.51853	0.80686	0.00087426	2.1248	0.0023022	2.9316	0.0031765	1083.5292653282168	33.431	0.19307	33.431	33.311	33.504	0	108	97	1.5546752	0.05659175	1.5546752	315.32092	0	11.477997						210	9	2	NaN	NaN	NaN	0.77489	1	12086	12086		12.588	1.0394	1	30802	+		5158	12036	3001	3052	4081	4081					-0.019428127282481
FEYEYAMRW	9	Oxidation (M)	_FEYEYAM(Oxidation (M))RW_		FEYEYAM(1)RW		FEYEYAM(53)RW	0	0	1		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.7791559011999	2	655.779156	1309.54376	0.94051	0.00061677	-1.4127	-0.0009264	-0.47217	-0.00030964	656.2785702720323	22.524	0.24122	22.511	22.462	22.704	-0.013733	1137	52	0.9369253	0.03118217	0.93540585	379.22287	0	12.621063						196	11	2	NaN	NaN	NaN	0.03533	1	18086	18086		53.14	21.465	1	29310			5159	3586	3002	3053	4082	4082		402			-0.0986312598799941
FEYEYSQRW	9	Unmodified	_FEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.2882023538	2	654.288202	1306.56185	1.3245	0.00086661	-2.5021	-0.0016371	-1.1775	-0.00077045	654.2868619527785	21.537	0.16872	21.537	21.464	21.633	0	1146	82	0.93142134	0.049513936	0.93142134	377.00412	0	20.041351						156	8	4	NaN	NaN	NaN	0.10206	1	18876	18876		35.523	25.279	1	30972			5160	2088	3003	3054	4083	4083					-0.07916667741642414
FEYEYSQRW	9	Unmodified	_FEYEYSQRW_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.2882023538	2	654.288202	1306.56185	1.0267	0.00067178	-1.7812	-0.0011654	-0.75443	-0.00049362	654.2874661561389	21.537	0.072325	21.523	21.499	21.571	-0.014004	1146	49	0.93142134	0.029358983	0.9299019	377.00412	0	11.883423						114	4	3	NaN	NaN	NaN	0.041983	1	18041	18041		50.315	29.802	1	27269			5161	2088	3003	3054	4084	4084					-0.07916667741642414
FEYEYSQRW	9	Unmodified						0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.288202	1306.56185	1.4445	0.0009451	-3.0487	-0.0019947	-1.6042	-0.0010496	654.2874333710513	21.705	0.096312	21.705	21.705	21.802	0	1149	43	0.92958635	0.025686324	0.92958635	376.26138		10.396851	0.091351	-0.0012192	-0.0001578	NaN	50.315	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5453.6			5162	2088	3003	3054							-0.07916667741642414
FEYEYSQRW	9	Unmodified						0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	654.288202	1306.56185	1.0193	0.00066692	0.73679	0.00048207	1.7561	0.001149	654.2903034676979	21.633	0.096304	21.619	21.619	21.715	-0.013895	1149	64	0.92958635	0.038519144	0.9280669	376.26135		15.591095	0.041216	0.0029746	-0.0016772	NaN	35.523	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11844			5163	2088	3003	3054							-0.07916667741642414
FEYIHNWPRLS	11	Unmodified	_FEYIHNWPRLS_					0	0	0			REV__GPR75-ASB3|p.G372R|1|0.16|ENSG00000115239|chr2:53700395-53700395|C/G|missense_variant	REV__GPR75-ASB3|p.G372R|1|0.16|ENSG00000115239|chr2:53700395-53700395|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.36731834205	2	731.367318	1460.72008	1.4037	0.0010266	0.17418	0.00012739	1.5778	0.001154	731.3670446107486	24.791	0.048269	24.791	24.767	24.816	0	1047	37	0.99186665	0.02194339	0.99186665	401.02643	0	8.87204						45	3	2	NaN	NaN	NaN	0.76488	1	20435	20435		2.8895	0	1	3961.8	+		5164	13002	3004	3055	4085	4085					0.008152512374408616
FEYLRVPCR	9	Unmodified	_FEYLRVPCR_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8080507264001	2	591.808051	1181.60155	0.77137	0.00045651	-2.1678	-0.0012829	-1.3964	-0.00082642	591.8066112672777	31.477	0.048254	31.477	31.452	31.501	0	1179	46	0.9112251	0.027555227	0.9112251	369.23727	0	11.165649						44	3	2	NaN	NaN	NaN	0.66196	1	15883	15883		2.4615	0.28518	1	3956.2	+		5165	9945	3005	3056	4086	4086					0.01801180728102736
FEYLRVPCR	9	Unmodified						0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.808051	1181.60155	0.77137	0.00045651	-2.1678	-0.0012829	-1.3964	-0.00082642	591.8066112672777	31.477	0.048254	31.477	31.452	31.501	0	1179	46	0.9112251	0.027555227	0.9112251	369.23727		11.165649	0.19611	0.0022242	0.00075972	NaN	2.4615	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3956.2	+		5166	9945	3005	3056							0.01801180728102736
FEYLRVPCR	9	Unmodified						0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.808051	1181.60155	0.97418	0.00057653	-5.9249	-0.0035064	-4.9508	-0.0029299	591.8047302776173	31.089	0.0483	31.084	31.036	31.084	-0.0050716	1179	49	0.9112251	0.029384315	0.90970564	369.23727		11.90683	-0.19611	-0.0022228	-0.00075972	NaN	2.4615	75	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8690.9	+		5167	9945	3005	3056							0.01801180728102736
FFAIIGGI	8	Unmodified	_FFAIIGGI_					0	0	0			REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4869021615001	1	837.486902	836.479626	0.93903	0.00078642	0.176	0.0001474	1.115	0.00093382	837.4868794638542	39.861	0.26521	39.867	39.746	40.012	0.0060463	516	55	1.3124412	0.032286048	1.3109218	267.1744	0	6.57251						207	12	2	NaN	NaN	NaN	0.83849	1	5100	5100		4.0537	0	1	18989	+		5168	13448	3006	3057	4087	4087					0.054845067080464105
FFAIIGGI	8	Unmodified						0	0	0			REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	837.486902	836.479626	0.93903	0.00078642	0.176	0.0001474	1.115	0.00093382	837.4868794638542	39.861	0.26521	39.867	39.746	40.012	0.0060463	516	55	1.3124412	0.032286048	1.3109218	267.1744		6.57251	0.0019878	-0.00029261	0.00013736	NaN	4.0537	207	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18989	+		5169	13448	3006	3057							0.054845067080464105
FFALDSPEWG	10	Unmodified	_FFALDSPEWG_					0	0	0			REV__ZZEF1|p.N1692S|1|0.3|ENSG00000074755|chr17:4058084-4058084|T/C|missense_variant	REV__ZZEF1|p.N1692S|1|0.3|ENSG00000074755|chr17:4058084-4058084|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.76911414365	2	584.769114	1167.52368	1.5512	0.00090707	1.4667	0.0008577	3.0179	0.0017648	584.7698375235511	32.152	0.26545	32.152	32.104	32.37	0	1215	82	0.8891654	0.04967457	0.8891654	360.3486	0	20.131409						330	12	3	NaN	NaN	NaN	0.73444	1	15388	15388		5.6942	1.384	1	35743	+		5170	13658	3007	3058	4088	4088					-0.05338553656292788
FFAPSGSP	8	Unmodified	_FFAPSGSP_					0	0	0		ENST00000509479.6_1_4:141074561-141074693:-|nuORF	ENST00000509479.6_1_4:141074561-141074693:-|nuORF	ENST00000509479.6_1_4:141074561-141074693:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3828310205001	1	809.382831	808.375555	2.0396	0.0016508	-0.93767	-0.00075894	1.1019	0.00089185	809.3818441167634	22.284	0.14473	22.284	22.236	22.38	0	531	64	1.3034686	0.037685156	1.3034686	265.4969	0	7.6759033						163	7	2	NaN	NaN	NaN	0.78605	1	4866	4866		11.091	0	1	13324			5171	7347	3008	3059	4089	4089					-0.03629820119465421
FFASFIYAY	9	Unmodified	_FFASFIYAY_					0	0	0			REV__tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	REV__tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.7736682053	2	564.773668	1127.53278	2.0509	0.0011583	-5.2232	-0.0029499	-3.1723	-0.0017916	564.7706135042926	30.342	0.24133	30.342	30.294	30.535	0	1185	100	0.90755045	0.060687065	0.90755045	367.95172	0	24.604614						427	11	3	NaN	NaN	NaN	0.3389	1	13994	13994		16.417	0	1	125430	+		5172	13464	3009	3060	4090	4090					-0.025881602999561437
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2418749379	2	544.241875	1086.4692	2.292	0.0012474	-1.0848	-0.00059039	1.2072	0.00065702	544.2415207763735	28.146	0.43431	28.146	27.977	28.412	0	1239	103	0.87444305	0.06264448	0.87444305	354.69064	0	25.40979						1261	19	5	NaN	NaN	NaN	0.013959	1	12225	12225		80.901	36.262	1	840370		+	5173	219	3010	3061	4091	4091					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.4764734091998	1	1087.47647	1086.4692	2.0614	0.0022417	-0.36014	-0.00039165	1.7012	0.00185	1087.4764985998995	28.122	0.048262	28.122	28.122	28.17	0	669	130	1.2206948	0.077528596	1.2206948	247.57133	0	15.723724						210	3	4	NaN	NaN	NaN	0.19268	1	12226	12226		25.801	9.2168	1	18500		+	5174	219	3010	3061	4092	4092					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.4764734091998	1	1087.47647	1086.4692	2.7752	0.003018	-0.37813	-0.00041121	2.3971	0.0026068	1087.4765450351517	28.146	0.48257	28.146	27.977	28.46	0	126	235	1.544062	0.1382649	1.544062	313.15402	0	28.041748						1844	21	5	NaN	NaN	NaN	0.013696	1	12227	12227		81.699	31.738	1	1188300		+	5175	219	3010	3061	4093	4093					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2418749379	2	544.241875	1086.4692	1.9281	0.0010493	-1.4443	-0.00078603	0.48378	0.00026329	544.2411167770763	28.145	0.43439	28.137	28.016	28.45	-0.0089798	1239	94	0.87444305	0.057101607	0.8729236	354.69064	0	23.161469						1398	19	5	NaN	NaN	NaN	0.0052656	1	11911	11911		102.05	43.811	1	925010		+	5176	219	3010	3061	4094	4094					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.4764734091998	1	1087.47647	1086.4692	0.94097	0.0010233	1.0785	0.0011728	2.0194	0.0021961	1087.4781153650995	28.145	0.07238	28.137	28.112	28.185	-0.0089798	666	115	1.2224985	0.06852472	1.2209791	247.93715	0	13.897598						181	4	3	NaN	NaN	NaN	0.19268	1	11913	11913		25.801	9.2168	1	16723		+	5177	219	3010	3061	4095	4095					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.4764734091998	1	1087.47647	1086.4692	1.7927	0.0019495	0.4976	0.00054113	2.2903	0.0024906	1087.4779716523847	28.145	0.41026	28.137	27.919	28.33	-0.0089798	129	223	1.5422925	0.13114643	1.540773	312.79514	0	26.598053						1808	18	5	NaN	NaN	NaN	0.0012818	1	11914	11914		113.18	46.029	1	1065900		+	5178	219	3010	3061	4096	4096					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.4764734091998	1	1087.47647	1086.4692	0.97999	0.0010657	2.551	0.0027741	3.531	0.0038398	1087.4808248329323	29.497	0.14479	29.49	29.442	29.586	-0.0070648	129	64	1.5422925	0.037163854	1.540773	312.79514	0	7.537262						151	7	3	NaN	NaN	NaN	0.13999	1	11916	11916		30.035	9.5221	1	12159		+	5179	219	3010	3061	4097	4097					-0.07057888799363354
FFDAELSQM	9	Unmodified	_FFDAELSQM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.4764734091998	1	1087.47647	1086.4692	0.95181	0.0010351	5.0347	0.0054751	5.9865	0.0065102	1088.4869415448584	28.387	0.19305	28.378	28.354	28.547	-0.0089779	132	73	1.5405227	0.042484283	1.5390033	312.4362	0	8.616333						319	9	3	NaN	NaN	NaN	0.40649	1	11917	11917		13.463	9.05	1	35525		+	5180	219	3010	3061	4098	4098					-0.07057888799363354
FFDAELSQM	9	Unmodified						0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.241875	1086.4692	1.5	0.00081636	0.37817	0.00020581	1.8782	0.0010222	544.2409602118711	28.532	0.1931	28.532	28.436	28.629	0	1245	76	0.87076044	0.046064615	0.87076044	353.19693		18.684692	0.19791	0.0017994	-0.0010816	NaN	102.05	247	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20548		+	5181	219	3010	3061							-0.07057888799363354
FFDAELSQM	9	Unmodified						0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.241875	1086.4692	2.4039	0.0013083	1.8717	0.0010187	4.2757	0.002327	544.2437394888439	27.832	0.072454	27.822	27.798	27.87	-0.009552	1236	28	0.876284	0.0165689	0.8747646	355.43738		6.720642	-0.16202	0.0030836	0.00016078	NaN	80.901	37	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1938.8		+	5182	219	3010	3061							-0.07057888799363354
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(130)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.4713880312997	1	1103.47139	1102.46411	1.9905	0.0021965	-0.066607	-7.3499E-05	1.9239	0.002123	1103.4719011840814	24.237	0.38599	24.237	24.188	24.574	0	135	184	1.5387528	0.1081357	1.5387528	312.02045	0	21.927216						1537	17	6	NaN	NaN	NaN	1.1649E-05	1	12921	12921		128.29	61.14	1	745350		+	5183	219	3010	3062	4099	4099		15			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(120)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.23933224895	2	552.239332	1102.46411	1.3753	0.0007595	0.95429	0.000527	2.3296	0.0012865	552.2399058282183	24.213	0.072433	24.213	24.188	24.261	0	1248	103	0.8689189	0.06261742	0.8689189	352.3859	0	25.394196						318	4	6	NaN	NaN	NaN	0.00065562	1	12924	12924		115.07	67.934	1	208140		+	5184	219	3010	3062	4100	4100		15			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(130)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.4713880312997	1	1103.47139	1102.46411	2.2781	0.0025138	-0.59897	-0.00066095	1.6791	0.0018528	1103.4712586389055	24.26	0.33789	24.248	24.199	24.537	-0.012749	135	202	1.5387528	0.1187973	1.5372335	312.02045	0	24.089111						1380	15	5	NaN	NaN	NaN	3.0773E-07	1	12584	12584		130.13	62.981	1	672980		+	5185	219	3010	3062	4101	4101		15			-0.08302192661994923
FFDAELSQM	9	Oxidation (M)	_FFDAELSQM(Oxidation (M))_		FFDAELSQM(1)		FFDAELSQM(140)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.23933224895	2	552.239332	1102.46411	1.7836	0.00098495	1.3211	0.00072956	3.1047	0.0017145	552.2401367576348	24.236	0.024145	24.224	24.199	24.224	-0.012747	1248	103	0.8689189	0.06261742	0.86739945	352.3859	0	25.394196						263	2	5	NaN	NaN	NaN	3.7692E-08	1	12586	12586		140.15	72.992	1	293520		+	5186	219	3010	3062	4102	4102		15			-0.08302192661994923
FFDAQEVLL	9	Unmodified	_FFDAQEVLL_					0	0	0		nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	nc|ENSG00000079156|Q9BZF3-6|OSBPL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5564382897	1	1081.55644	1080.54916	1.0092	0.0010915	1.1221	0.0012136	2.1313	0.0023051	1081.5581867845533	32.249	0.21716	32.249	32.201	32.418	0	90	82	1.5652816	0.04773152	1.5652816	317.47943	0	9.681183						224	10	2	NaN	NaN	NaN	0.23358	1	12012	12012		31.675	15.854	1	22126			5187	771	3011	3063	4103	4103					0.012109208661513549
FFDATDRVSF	10	Unmodified	_FFDATDRVSF_					0	0	0		nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-3|ZFX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7852955241	2	602.785296	1203.55604	1.3299	0.00080167	-4.0142	-0.0024197	-2.6843	-0.001618	603.2841088571998	24.985	0.072403	24.985	24.96	25.033	0	1182	52	0.9093879	0.031249523	0.9093879	368.41525	0	12.659943						51	4	2	NaN	NaN	NaN	0.6262	1	16569	16569		13.101	1.0525	1	20740			5188	7892	3012	3064	4104	4104					-0.037597662533016774
FFDDLSDSF	9	Unmodified	_FFDDLSDSF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000545801.1_1_12:121784684-121784864:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.4520327976998	1	1092.45203	1091.44476	1.4734	0.0016096	3.0268	0.0033066	4.5001	0.0049162	1092.455701827105	30.873	0.16891	30.873	30.849	31.018	0	141	52	1.5352125	0.03010106	1.5352125	311.34143	0	6.104492						162	8	3	NaN	NaN	NaN	0.20577	1	12445	12445		24.961	5.6763	1	15107			5189	1030	3013	3065	4105	4105					-0.09730825681253918
FFDDLSDSF	9	Unmodified	_FFDDLSDSF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000545801.1_1_12:121784684-121784864:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.4520327976998	1	1092.45203	1091.44476	1.1919	0.0013021	1.5829	0.0017293	2.7748	0.0030313	1092.454729389629	30.872	0.072437	30.866	30.842	30.915	-0.0057545	135	52	1.5387528	0.030094624	1.5372335	312.05942	0	6.1032104						106	4	3	NaN	NaN	NaN	0.61413	1	12128	12128		4.9097	0.85605	1	12080			5190	1030	3013	3065	4106	4106					-0.09730825681253918
FFDDPMLL	8	Unmodified	_FFDDPMLL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.4699314683002	1	997.469931	996.462655	1.8245	0.0018199	0.53553	0.00053417	2.3601	0.0023541	997.4702234199768	34.396	0.14467	34.396	34.348	34.493	0	180	64	1.5121819	0.037234902	1.5121819	307.03564	0	7.560211						221	7	3	NaN	NaN	NaN	0.078841	1	8436	8436		69.745	37.292	1	28005			5191	1702	3014	3066	4107	4107					-0.0357178196006771
FFDDPMLL	8	Unmodified	_FFDDPMLL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.4699314683002	1	997.469931	996.462655	1.3637	0.0013603	0.21221	0.00021168	1.5759	0.001572	997.4703368286198	34.395	0.19284	34.395	34.346	34.539	-0.0006485	180	67	1.5121819	0.039010048	1.5106624	307.03564	0	7.9206543						259	9	4	NaN	NaN	NaN	0.30832	1	8268	8268		41.46	20.905	1	27742			5192	1702	3014	3066	4108	4108					-0.0357178196006771
FFDDPMLL	8	Oxidation (M)	_FFDDPM(Oxidation (M))LL_		FFDDPM(1)LL		FFDDPM(59)LL	0	0	1		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.4648460904002	1	1013.46485	1012.45757	1.4607	0.0014804	0.97616	0.00098931	2.4369	0.0024697	1013.4661122410251	30.825	0.19305	30.825	30.728	30.922	0	171	88	1.5174994	0.051414132	1.5174994	308.04892	0	10.436951						228	9	2	NaN	NaN	NaN	0.12449	1	9071	9071		59.445	23.409	1	41995			5193	1702	3014	3067	4109	4109		190			-0.04816085822676541
FFDDPMLL	8	Oxidation (M)	_FFDDPM(Oxidation (M))LL_		FFDDPM(1)LL		FFDDPM(41)LL	0	0	1		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.4648460904002	1	1013.46485	1012.45757	1.4533	0.0014729	0.91195	0.00092423	2.3652	0.0023971	1013.4654089787625	30.8	0.19305	30.794	30.722	30.915	-0.0057545	168	100	1.5192716	0.05851817	1.5177522	308.40866	0	11.879059						300	9	3	NaN	NaN	NaN	0.30832	1	8896	8896		41.46	17.61	1	41270			5194	1702	3014	3067	4110	4110		190			-0.04816085822676541
FFDDVGAVTL	10	Unmodified	_FFDDVGAVTL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5357028476	1	1083.5357	1082.52843	0.96989	0.0010509	-1.2198	-0.0013217	-0.24994	-0.00027082	1083.5340568394017	30.897	0.12065	30.897	30.873	30.994	0	132	73	1.5405227	0.042470813	1.5405227	312.4505	0	8.613983						209	6	3	NaN	NaN	NaN	0.033206	1	12087	12087		58.235	36.4	1	31922			5195	2986	3015	3068	4111	4111					-0.009536695135011541
FFDDVGAVTL	10	Unmodified	_FFDDVGAVTL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5357028476	1	1083.5357	1082.52843	1.3213	0.0014316	2.7793	0.0030115	4.1006	0.0044431	1083.540030364799	30.92	0.14485	30.915	30.867	31.012	-0.0050716	129	124	1.5422925	0.072473645	1.540773	312.80942	0	14.699188						345	7	4	NaN	NaN	NaN	0.013201	1	11779	11779		67.154	34.702	1	46101			5196	2986	3015	3068	4112	4112					-0.009536695135011541
FFDKAYLF	8	Unmodified	_FFDKAYLF_					0	0	0		ENST00000396842.6_1_3:15481697-15481937:+|nuORF	ENST00000396842.6_1_3:15481697-15481937:+|nuORF	ENST00000396842.6_1_3:15481697-15481937:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.76838586215	2	525.768386	1049.52222	1.127	0.00059255	-5.2138	-0.0027412	-4.0867	-0.0021487	525.7655934687508	20.549	0.072201	20.549	20.525	20.597	0	1215	43	0.8891654	0.02575022	0.8891654	360.8213	0	10.449371						81	4	2	NaN	NaN	NaN	0.80191	1	10609	10609		8.962	1.4216	1	12172			5197	6800	3016	3069	4113	4113					-0.0005614295439499983
FFDKQFTKT	9	Unmodified	_FFDKQFTKT_					0	0	0			REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.30058144755	2	581.300581	1160.58661	1.9328	0.0011236	1.5101	0.00087782	3.4429	0.0020014	581.3019466181798	25.419	0.16889	25.407	25.358	25.527	-0.012011	1185	49	0.90755045	0.02940017	0.906031	367.8251	0	11.915741						198	8	4	NaN	NaN	NaN	0.16171	1	14664	14664		27.789	3.2268	1	29408	+		5198	13054	3017	3070	4114	4114					0.012740121317619924
FFDKQFTKT	9	Unmodified						0	0	0			REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.300581	1160.58661	2.112	0.0012277	0.11455	6.6587E-05	2.2265	0.0012943	581.3010462309517	25.395	0.14478	25.395	25.346	25.491	0	1185	49	0.90755045	0.029403389	0.90755045	367.8251		11.917053	-0.0059129	-0.00085141	0.00075972	NaN	27.789	176	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26474	+		5199	13054	3017	3070							0.012740121317619924
FFDKQFTKT	9	Unmodified						0	0	0			REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	REV__LHCGR|p.R632K|1|0.39|ENSG00000138039|chr2:48687902-48687902|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.300581	1160.58661	1.9328	0.0011236	1.5101	0.00087782	3.4429	0.0020014	581.3019466181798	25.419	0.16889	25.407	25.358	25.527	-0.012011	1185	49	0.90755045	0.02940017	0.906031	367.8251		11.915741	0.0059129	0.00077104	-0.00075972	NaN	27.789	198	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29408	+		5200	13054	3017	3070							0.012740121317619924
FFDNISSEL	9	Unmodified	_FFDNISSEL_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.4993173413	1	1071.49932	1070.49204	1.7814	0.0019087	0.37473	0.00040153	2.1561	0.0023103	1071.4995325182365	29.039	0.19311	29.039	28.991	29.184	0	159	97	1.5245869	0.056693792	1.5245869	309.26215	0	11.500305						412	9	4	NaN	NaN	NaN	0.015029	1	11572	11572		78.289	45.837	1	82849			5201	3691	3018	3071	4115	4115					-0.04038546410242816
FFDNISSEL	9	Unmodified	_FFDNISSEL_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.4993173413	1	1071.49932	1070.49204	1.1811	0.0012655	0.16779	0.00017978	1.3489	0.0014453	1071.499992218762	29.038	0.16891	29.031	28.982	29.151	-0.0077229	156	97	1.5263584	0.05666983	1.5248389	309.62146	0	11.495453						429	8	4	NaN	NaN	NaN	0.012861	1	11278	11278		84.233	41.915	1	78096			5202	3691	3018	3071	4116	4116					-0.04038546410242816
FFDPSLLHL	9	Unmodified	_FFDPSLLHL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7923922747001	2	544.792392	1087.57023	1.3093	0.00071329	-0.60688	-0.00033062	0.7024	0.00038266	544.7922906587045	30.463	0.14478	30.463	30.439	30.584	0	1218	88	0.8873258	0.053319573	0.8873258	359.91156	0	21.627167						237	7	3	NaN	NaN	NaN	0.078597	1	12286	12286		38.918	22.501	1	35622			5203	1001	3019	3072	4117	4117					0.0299493096565584
FFDPSLLHL	9	Unmodified	_FFDPSLLHL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7923922747001	2	544.792392	1087.57023	1.0332	0.00056289	-0.47327	-0.00025783	0.55995	0.00030506	544.7921301488409	30.462	0.16888	30.456	30.432	30.601	-0.0057545	1215	88	0.8891654	0.05331379	0.88764596	360.65775	0	21.624817						284	8	4	NaN	NaN	NaN	0.01663	1	11979	11979		76.264	37.346	1	40701			5204	1001	3019	3072	4118	4118					0.0299493096565584
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3344242649001	2	601.334424	1200.6543	0.97335	0.00058531	-7.4961	-0.0045076	-6.5227	-0.0039223	601.8306495371104	33.962	0.26548	33.962	33.89	34.155	0	1152	121	0.92775106	0.073342144	0.92775106	375.86493	0	29.713501						718	12	5	NaN	NaN	NaN	0.033206	1	16505	16505		58.235	36.4	1	231290			5205	1001	3020	3073	4119	4119					0.06199462062568273
FFDPSLLHLL	10	Unmodified	_FFDPSLLHLL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3344242649001	2	601.334424	1200.6543	0.90161	0.00054217	-6.7499	-0.004059	-5.8483	-0.0035168	601.8314122890422	33.961	0.21724	33.96	33.911	34.129	-0.0012474	1149	115	0.92958635	0.06967497	0.9280669	376.60846	0	28.227814						680	10	5	NaN	NaN	NaN	0.010516	1	15855	15855		70.6	41.704	1	229520			5206	1001	3020	3073	4120	4120					0.06199462062568273
FFDPSLLHLLY	11	Unmodified	_FFDPSLLHLLY_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.8660885340502	2	682.866089	1363.71762	1.559	0.0010646	-5.3305	-0.00364	-3.7715	-0.0025754	682.8608356565471	34.685	0.096439	34.684	34.636	34.732	-0.0006485	1050	55	0.9900381	0.0329293	0.9885187	400.5542	0	13.322662						106	5	3	NaN	NaN	NaN	0.25335	1	18813	18813		27.296	9.3265	1	7008.6			5207	1001	3021	3074	4121	4121					0.050314027798094685
FFDPSLLHLLY	11	Unmodified						0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	682.866089	1363.71762	1.6872	0.0011521	-4.4614	-0.0030465	-2.7742	-0.0018944	682.8624626957948	34.638	0.12059	34.638	34.614	34.734	0	1053	52	0.9882094	0.031101525	0.9882094	399.81433		12.583221	-0.023123	0.00059078	-0.00015464	NaN	27.296	66	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6187.1			5208	1001	3021	3074							0.050314027798094685
FFDSVQVVF	9	Unmodified	_FFDSVQVVF_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2765750350001	2	544.276575	1086.5386	1.1183	0.00060864	-2.4198	-0.001317	-1.3015	-0.00070838	544.2750446361139	32.949	0.16901	32.949	32.9	33.069	0	1302	70	0.8357362	0.042425334	0.8357362	338.99017	0	17.208496						300	8	4	NaN	NaN	NaN	0.043119	1	12246	12246		49.833	25.982	1	72604			5209	3972	3022	3075	4122	4122					-0.0012106178828616976
FFDSVQVVF	9	Unmodified	_FFDSVQVVF_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2765750350001	2	544.276575	1086.5386	1.184	0.00064444	-1.5572	-0.00084756	-0.37318	-0.00020311	544.2755019688998	32.948	0.21703	32.945	32.897	33.114	-0.0024757	1302	70	0.8357362	0.042420685	0.8342168	338.99017	0	17.206604						317	10	4	NaN	NaN	NaN	0.043119	1	11931	11931		49.833	20.937	1	80634			5210	3972	3022	3075	4123	4123					-0.0012106178828616976
FFDTNTSVL	9	Unmodified	_FFDTNTSVL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2558395929001	2	522.25584	1042.49713	1.1371	0.00059387	-0.55981	-0.00029237	0.57731	0.0003015	522.2554456874437	27.615	0.07239	27.605	27.581	27.653	-0.009552	1266	43	0.85786515	0.025803149	0.8563457	348.1501	0	10.471771						84	4	2	NaN	NaN	NaN	0.39244	1	10105	10105		14.042	1.4537	1	13275			5211	4986	3023	3076	4124	4124					-0.022422425476179342
FFDTNTSVL	9	Unmodified						0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.25584	1042.49713	1.3617	0.00071114	-1.2956	-0.00067664	0.066054	3.4497E-05	522.2551504015242	27.591	0.096516	27.591	27.567	27.664	0	1266	49	0.85786515	0.029492497	0.85786515	348.1501		11.969025	-0.0068787	-0.00039606	0.00075972	NaN	14.042	112	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14686			5212	4986	3023	3076							-0.022422425476179342
FFDVMNPSE	9	Unmodified	_FFDVMNPSE_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2340499058001	2	543.23405	1084.45355	1.4983	0.00081394	0.50358	0.00027356	2.0019	0.0010875	543.2348576129152	24.237	0.2413	24.237	24.213	24.454	0	1260	91	0.8615505	0.055298448	0.8615505	349.46933	0	22.430634						496	11	4	NaN	NaN	NaN	0.042816	1	12145	12145		49.961	7.6437	1	144500			5213	805	3024	3077	4125	4125					-0.08530175316377608
FFECGWFLCSI	11	Unmodified	_FFECGWFLCSI_					0	0	0			REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.2961272338501	2	676.296127	1350.5777	1.1003	0.00074413	-0.80537	-0.00054467	0.29493	0.00019946	676.2958206537105	20.525	0.19251	20.525	20.477	20.67	0	1131	46	0.94059354	0.027507722	0.94059354	380.58682	0	11.13031						229	9	4	NaN	NaN	NaN	0.7072	1	19547	19547		6.9844	0.55443	1	29284	+		5214	11785	3025	3078	4126	4126					-0.08356420820564381
FFEEDACQL	9	Unmodified	_FFEEDACQL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.23150721685	2	551.231507	1100.44846	1.0909	0.00060136	1.021	0.00056283	2.112	0.0011642	551.2316153140124	30.511	0.14477	30.511	30.463	30.608	0	1278	91	0.85049206	0.055280566	0.85049206	344.92078	0	22.419281						194	6	2	NaN	NaN	NaN	0.56671	1	12843	12843		6.8632	1.3974	1	26208			5215	5984	3026	3079	4127	4127					-0.09774479179031914
FFELRFLFLKF	11	Unmodified	_FFELRFLFLKF_					0	0	0			REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.92902314185	2	753.929023	1505.84349	0.80677	0.00060825	3.0304	0.0022847	3.8372	0.002893	753.9317990537463	33.721	0.072388	33.721	33.697	33.769	0	1005	76	1.0174452	0.045624495	1.0174452	411.25256	0	18.441467						209	4	3	NaN	NaN	NaN	0.74794	1	20603	20603		4.3102	1.4207	1	20423	+		5216	13021	3027	3080	4128	4128					0.11080534355869531
FFELRFLFLKF	11	Unmodified						0	0	0			REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	753.929023	1505.84349	0.80677	0.00060825	3.0304	0.0022847	3.8372	0.002893	753.9317990537463	33.721	0.072388	33.721	33.697	33.769	0	1005	76	1.0174452	0.045624495	1.0174452	411.25256		18.441467	0.0015528	-0.0012653	0.00075972	NaN	4.3102	209	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20423	+		5217	13021	3027	3080							0.11080534355869531
FFELRFLFLKF	11	Unmodified						0	0	0			REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	REV__HVCN1|p.V160L|1|0.37|ENSG00000122986|chr12:110651382-110651382|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	753.929023	1505.84349	0.87168	0.00065718	4.5288	0.0034144	5.4005	0.0040716	753.9328878993429	33.72	0.072403	33.718	33.694	33.766	-0.0018463	1005	73	1.0174452	0.043797135	1.0159258	411.25256		17.70285	-0.0015528	0.00099398	-0.00075972	NaN	4.3102	193	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19721	+		5218	13021	3027	3080							0.11080534355869531
FFEPCRKHD	9	Unmodified	_FFEPCRKHD_					0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.77420790905	2	589.774208	1177.53386	0.86411	0.00050963	3.9949	0.0023561	4.859	0.0028657	589.7772544269533	20.646	0.19287	20.632	20.584	20.776	-0.014086	1206	55	0.894683	0.03309667	0.89316356	362.54868	0	13.411621						269	9	3	NaN	NaN	NaN	0.46215	1	15161	15161		11.17	0.56537	1	28528	+		5219	9276	3028	3081	4129	4129					-0.04780269202706222
FFEPCRKHD	9	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.774208	1177.53386	1.342	0.0007915	2.1252	0.0012534	3.4673	0.0020449	589.775390198713	20.622	0.21677	20.622	20.525	20.742	0	1206	58	0.894683	0.034941077	0.894683	362.5487		14.159027	-0.005122	-0.0011456	0.00075972	NaN	11.17	216	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31093	+		5220	9276	3028	3081							-0.04780269202706222
FFEPCRKHD	9	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.774208	1177.53386	0.86411	0.00050963	3.9949	0.0023561	4.859	0.0028657	589.7772544269533	20.646	0.19287	20.632	20.584	20.776	-0.014086	1206	55	0.894683	0.03309667	0.89316356	362.54868		13.411621	0.005122	0.0010597	-0.00075972	NaN	11.17	269	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28528	+		5221	9276	3028	3081							-0.04780269202706222
FFEPQLIEQP	10	Unmodified	_FFEPQLIEQP_					0	0	0			REV__ENSG00000158169|ENST00000289081|FANCC	REV__ENSG00000158169|ENST00000289081|FANCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.3189711659501	2	624.318971	1246.62339	1.6101	0.0010052	-8.5262	-0.0053231	-6.9161	-0.0043178	624.313499764293	15.87	0.095894	15.87	15.846	15.942	0	1191	73	0.90387505	0.044124186	0.90387505	366.03842	0	17.868774						92	5	2	NaN	NaN	NaN	0.76892	1	17683	17683		3.2116	0.7501	1	7419.8	+		5222	10161	3029	3082	4130	4130					0.009942639576593137
FFEPQLIEQP	10	Unmodified						0	0	0			REV__ENSG00000158169|ENST00000289081|FANCC	REV__ENSG00000158169|ENST00000289081|FANCC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.318971	1246.62339	1.6101	0.0010052	-8.5262	-0.0053231	-6.9161	-0.0043178	624.313499764293	15.87	0.095894	15.87	15.846	15.942	0	1191	73	0.90387505	0.044124186	0.90387505	366.03842		17.868774	0	0	0	NaN	3.2116	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7419.8	+		5223	10161	3029	3082							0.009942639576593137
FFEVSPVSF	9	Unmodified	_FFEVSPVSF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5193245019	1	1058.51932	1057.51205	1.4958	0.0015834	0.71706	0.00075903	2.2129	0.0023424	1058.520500537365	31.935	0.07242	31.935	31.887	31.959	0	138	94	1.5369828	0.054890037	1.5369828	311.82532	0	11.136169						181	4	2	NaN	NaN	NaN	0.0094682	1	10982	10982		93.472	61.911	1	27112			5224	1006	3030	3083	4131	4131					-0.01440750679626035
FFEVSPVSF	9	Unmodified	_FFEVSPVSF_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5193245019	1	1058.51932	1057.51205	0.88945	0.0009415	0.73895	0.00078219	1.6284	0.0017237	1058.5184846509324	31.934	0.12065	31.93	31.882	32.003	-0.0037613	135	100	1.5387528	0.05841279	1.5372335	312.18445	0	11.850861						266	6	3	NaN	NaN	NaN	0.016254	1	10757	10757		76.739	43.041	1	29416			5225	1006	3030	3083	4132	4132					-0.01440750679626035
FFFFFFFFKQF	11	Unmodified	_FFFFFFFFKQF_					0	0	0		ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.8971916972	2	799.897192	1597.77983	1.8888	0.0015108	-1.2906	-0.0010324	0.59815	0.00047846	799.8963144988319	23.995	0.21716	23.995	23.947	24.164	0	906	43	1.0775855	0.025468707	1.0775855	435.33298	0	10.289124						275	10	4	NaN	NaN	NaN	0.49762	1	20747	20747		15.463	5.851	1	46864			5226	7132	3031	3084	4133	4133					0.0048517391878704075
FFFFFFFFKQF	11	Unmodified	_FFFFFFFFKQF_					0	0	0		ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.600553287	3	533.600553	1597.77983	1.2832	0.00068471	-2.9108	-0.0015532	-1.6276	-0.00086848	533.9335976640892	24.067	0.24125	24.055	23.982	24.224	-0.012749	1365	145	0.7969414	0.088630915	0.79542196	482.93106	0	53.708588						691	11	5	NaN	NaN	NaN	0.76733	1	19727	19727		2.4611	0.22218	1	142380			5227	7132	3031	3084	4134	4134					0.0048517391878704075
FFFFFFFFKQF	11	Unmodified						0	0	0		ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	533.600553	1597.77983	2.0844	0.0011122	-3.5307	-0.001884	-1.4463	-0.00077173	533.598688094127	23.995	0.21716	23.995	23.947	24.164	0	1365	145	0.7969414	0.088630915	0.7969414	482.93106		53.708588	-0.029686	-0.00056807	0.00075972	NaN	2.4611	758	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179750			5228	7132	3031	3084							0.0048517391878704075
FFFFFFFFKQF	11	Unmodified						0	0	0		ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENST00000468830.1_1_7:131163282-131172484:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	799.897192	1597.77983	1.6935	0.0013546	-0.92271	-0.00073807	0.77075	0.00061652	799.8964288976466	24.043	0.2171	24.031	23.982	24.199	-0.012749	906	46	1.0775855	0.02728939	1.076066	435.33298		11.024628	0.017626	0.00025631	-0.00075972	NaN	15.463	283	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43655			5229	7132	3031	3084							0.0048517391878704075
FFFFFFFLFFF	11	Unmodified	_FFFFFFFLFFF_					0	0	0			REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.9335324095	3	534.933532	1601.77877	1.2927	0.00069148	-4.7466	-0.0025391	-3.454	-0.0018476	534.9311316182782	23.079	0.12046	23.065	23.041	23.162	-0.013294	1374	43	0.791392	0.025898278	0.7898726	479.558	0	15.693512						129	6	4	NaN	NaN	NaN	0.76594	1	19732	19732		2.7042	0	1	12612	+		5230	11826	3032	3085	4135	4135					0.0019495954988997255
FFFFFFFLFFF	11	Unmodified	_FFFFFFFLFFF_					0	0	0			REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.89666038095	2	801.89666	1601.77877	2.04	0.0016359	-3.4744	-0.0027861	-1.4344	-0.0011502	802.3962347820527	23.079	0.072191	23.065	23.041	23.114	-0.013294	906	37	1.0775855	0.02183032	1.076066	435.32364	0	8.819061						68	4	2	NaN	NaN	NaN	0.77356	1	19733	19733		1.9246	0	1	7042.6	+		5231	11826	3032	3085	4136	4136					0.0019495954988997255
FFFFFFFLFFF	11	Unmodified						0	0	0			REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	801.89666	1601.77877	2.04	0.0016359	-3.4744	-0.0027861	-1.4344	-0.0011502	802.3962347820527	23.079	0.072191	23.065	23.041	23.114	-0.013294	906	37	1.0775855	0.02183032	1.076066	435.32364		8.819061	0.029149	0.00022287	-0.00075972	NaN	1.9246	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7042.6	+		5232	11826	3032	3085							0.0019495954988997255
FFFFFFFLFFF	11	Unmodified						0	0	0			REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	534.933532	1601.77877	1.2927	0.00069148	-4.7466	-0.0025391	-3.454	-0.0018476	534.9311316182782	23.079	0.12046	23.065	23.041	23.162	-0.013294	1374	43	0.791392	0.025898278	0.7898726	479.558		15.693512	0.029149	0.0006865	-0.00075972	NaN	2.7042	129	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12612	+		5233	11826	3032	3085							0.0019495954988997255
FFFFKRVATCV	11	Unmodified	_FFFFKRVATCV_					0	0	0			REV__ENST00000557773.5_1_14:35568434-35591165:-|nuORF	REV__ENST00000557773.5_1_14:35568434-35591165:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.8628259511001	2	682.862826	1363.7111	1.6872	0.0011521	0.31636	0.00021603	2.0036	0.0013682	682.8624626957948	34.638	0.12059	34.638	34.614	34.734	0	1053	52	0.9882094	0.031101525	0.9882094	399.81433	0	12.583221						66	6	2	NaN	NaN	NaN	0.74155	1	19730	19730		4.7291	0	1	6187.1	+		5234	8740	3033	3086	4137	4137					0.04379186347455288
FFFFLFFF	8	Unmodified	_FFFFLFFF_					0	0	0		ENST00000479872.5_1_1:165877514-165877814:+|nuORF;ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF;REV__ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.29403950665	2	581.29404	1160.57353	2.0989	0.00122	-2.6143	-0.0015197	-0.51544	-0.00029962	581.2924685597048	16.997	0.16801	16.997	16.949	17.117	0	1191	64	0.90387505	0.038606524	0.90387505	366.33554	0	15.647003						248	8	3	NaN	NaN	NaN	0.81214	1	15166	15166		7.5902	0.0026371	1	48181			5235	7198;11826	3034	3087	4138	4138					-0.00033774189682844735
FFFFNGYAVS	10	Unmodified	_FFFFNGYAVS_					0	0	0			REV__ENST00000498205.5_1_3:156260994-156266845:-|nuORF	REV__ENST00000498205.5_1_3:156260994-156266845:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.7820245536501	2	599.782025	1197.5495	1.8581	0.0011144	-4.602	-0.0027602	-2.7439	-0.0016457	599.778451379017	17.909	0.11992	17.909	17.861	17.981	0	1215	34	0.8891654	0.020235598	0.8891654	360.2431	0	8.198395						54	6	2	NaN	NaN	NaN	0.69717	1	16382	16382		8.2448	1.3816	1	3839.9	+		5236	12507	3035	3088	4139	4139					-0.04137659414004702
FFFFNGYAVS	10	Unmodified						0	0	0			REV__ENST00000498205.5_1_3:156260994-156266845:-|nuORF	REV__ENST00000498205.5_1_3:156260994-156266845:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.782025	1197.5495	1.8581	0.0011144	-4.602	-0.0027602	-2.7439	-0.0016457	599.778451379017	17.909	0.11992	17.909	17.861	17.981	0	1215	34	0.8891654	0.020235598	0.8891654	360.2431		8.198395	0	0	0	NaN	8.2448	54	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3839.9	+		5237	12507	3035	3088							-0.04137659414004702
FFFFWHSFAQD	11	Unmodified	_FFFFWHSFAQD_					0	0	0		ENST00000536682.1_19:35167898-35168335:-|nuORF	ENST00000536682.1_19:35167898-35168335:-|nuORF	ENST00000536682.1_19:35167898-35168335:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.8300373787501	2	739.830037	1477.64552	1.3813	0.0010219	5.7303	0.0042394	7.1115	0.0052613	739.8342249877832	12.22	0.048057	12.22	12.172	12.22	0	1008	31	1.0156195	0.018258572	1.0156195	410.5859	0	7.381439						50	3	2	NaN	NaN	NaN	0.76488	1	20509	20509		2.8895	0.7869	1	5295			5238	7473	3036	3089	4140	4140					-0.07419511573903037
FFFPCTKGL	9	Unmodified	_FFFPCTKGL_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2702384468502	2	530.270238	1058.52592	0.65927	0.00034959	7.5191	0.0039872	8.1784	0.0043368	530.2741539359774	31.138	0.16891	31.133	31.109	31.277	-0.0050716	1266	58	0.85786515	0.03501284	0.8563457	348.0813	0	14.2065735						154	8	2	NaN	NaN	NaN	0.31737	1	10787	10787		17.799	1.3823	1	20541	+		5239	10078	3037	3090	4141	4141					-0.0009979645215025812
FFFPLVLLL	9	Unmodified	_FFFPLVLLL_					0	0	0		nc|ENSG00000167608|Q7Z404-3|TMC4;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	nc|ENSG00000167608|Q7Z404-3|TMC4	nc|ENSG00000167608|Q7Z404-3|TMC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8438965289502	2	554.843897	1107.67324	0.46438	0.00025766	-4.71	-0.0026133	-4.2457	-0.0023557	554.8406422231435	31.187	0.12064	31.187	31.139	31.259	0	1206	61	0.894683	0.036762178	0.894683	362.8134	0	14.907837						115	6	3	NaN	NaN	NaN	0.58547	1	13196	13196		6.0903	0	1	10980			5240	4555	3038	3091	4142	4142					0.12371043424286654
FFFPLVLLL	9	Unmodified						0	0	0		nc|ENSG00000167608|Q7Z404-3|TMC4;nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	nc|ENSG00000167608|Q7Z404-3|TMC4	nc|ENSG00000167608|Q7Z404-3|TMC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.843897	1107.67324	1.001	0.00055541	-5.801	-0.0032187	-4.8	-0.0026633	554.8404471869408	31.21	0.16895	31.205	31.157	31.326	-0.0050716	1203	61	0.8965218	0.036762178	0.89500237	363.55905		14.907837	0.009012	-0.00059399	0.00015968	NaN	6.0903	166	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13108			5241	4555	3038	3091							0.12371043424286654
FFGICMVLI	9	Unmodified	_FFGICMVLI_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7768420584501	2	521.776842	1041.53913	1.8015	0.00094001	-5.7643	-0.0030077	-3.9627	-0.0020677	521.7734263531859	26.384	0.12068	26.384	26.336	26.456	0	1275	34	0.85233563	0.020279348	0.85233563	345.9102	0	8.230133						150	6	4	NaN	NaN	NaN	0.48931	1	10275	10275		10.052	1.0896	1	16250	+		5242	11189	3039	3092	4143	4143					0.02002318335576092
FFGICMVLI	9	Unmodified						0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.776842	1041.53913	1.8015	0.00094001	-5.7643	-0.0030077	-3.9627	-0.0020677	521.7734263531859	26.384	0.12068	26.384	26.336	26.456	0	1275	34	0.85233563	0.020279348	0.85233563	345.9102		8.230133	-0.0063683	-0.00014844	0.00075972	NaN	10.052	150	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16250	+		5243	11189	3039	3092							0.02002318335576092
FFGTFIIM	8	Unmodified	_FFGTFIIM_					0	0	0		tr|U7SV37|U7SV37_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01501PE=4SV=1	tr|U7SV37|U7SV37_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01501PE=4SV=1	tr|U7SV37|U7SV37_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01501PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5008376662001	1	975.500838	974.493561	0.93763	0.00091466	-2.5592	-0.0024965	-1.6216	-0.0015819	975.4980328321024	33.382	0.14479	33.38	33.332	33.476	-0.0018501	255	49	1.4678029	0.028440237	1.4662834	298.11655	0	5.7763367						136	7	2	NaN	NaN	NaN	0.65075	1	7580	7580		22.126	0.29135	1	17416			5244	13895	3040	3093	4144	4144					0.005294161448318846
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2900167612501	2	575.290017	1148.56548	1.359	0.00078181	1.657	0.00095325	3.016	0.0017351	575.2912649185766	26.432	0.21719	26.421	26.349	26.566	-0.011137	1194	88	0.902037	0.053296506	0.9005176	365.63547	0	21.603424						382	10	5	NaN	NaN	NaN	0.054111	1	14258	14258		45.165	6.247	1	69963			5245	1492	3041	3094	4145	4145					-0.0028595317710369272
FFIATWGMVL	10	Unmodified	_FFIATWGMVL_					0	0	0			REV__tr|U7SPT2|U7SPT2_FUSNUHemolysinIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01890PE=4SV=1	REV__tr|U7SPT2|U7SPT2_FUSNUHemolysinIIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01890PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8122704370501	2	592.81227	1183.60999	1.7649	0.0010463	-7.6488	-0.0045343	-5.8839	-0.003488	592.8076288106133	25.346	0.19301	25.346	25.298	25.491	0	1167	85	0.91857195	0.051439285	0.91857195	372.20703	0	20.843292						384	9	3	NaN	NaN	NaN	0.44258	1	15968	15968		21.835	2.6714	1	65018	+		5246	13460	3042	3095	4146	4146					0.025527346447233867
FFIDQANYF	9	Unmodified	_FFIDQANYF_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7716568326	2	582.771657	1163.52876	1.1031	0.00064283	-0.13686	-7.976E-05	0.9662	0.00056307	582.7717438299611	31.258	0.16893	31.253	31.205	31.374	-0.0050716	1194	55	0.902037	0.03309667	0.9005176	365.57968	0	13.413483						207	8	3	NaN	NaN	NaN	0.31737	1	14738	14738		17.799	3.7574	1	25841			5247	4079	3043	3096	4147	4147					-0.046462497936772706
FFILVCFLLLF	11	Unmodified	_FFILVCFLLLF_					0	0	0			REV__ENST00000354670.8_1_15:40383710-40384025:-|nuORF	REV__ENST00000354670.8_1_15:40383710-40384025:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.9346560156333	3	458.934656	1373.78214	0.85128	0.00039068	-2.1249	-0.0009752	-1.2736	-0.00058452	458.9340185947604	22.163	0.12057	22.149	22.077	22.197	-0.013731	1386	34	0.78399014	0.020358562	0.7824707	475.74707	0	12.354126						109	6	3	NaN	NaN	NaN	0.76594	1	18909	18909		2.7042	0.85398	1	10639	+		5248	11811	3044	3097	4148	4148					0.11019886332246642
FFKDVQENF	9	Unmodified	_FFKDVQENF_					0	0	0			REV__ENSG00000132383|ENST00000254719|RPA1	REV__ENSG00000132383|ENST00000254719|RPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.85735128513335	3	391.857351	1172.55022	1.7644	0.00069141	6.9829	0.0027363	8.7473	0.0034277	392.1935952738524	17.909	0.071939	17.909	17.885	17.957	0	1536	37	0.69119483	0.022331417	0.69119483	420.1515	0	13.574432						93	4	3	NaN	NaN	NaN	0.46215	1	15566	15566		7.1304	2.5871	1	7820	+		5249	9533	3045	3098	4149	4149					-0.02914864764943559
FFKNQVLLF	9	Unmodified	_FFKNQVLLF_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3316846107001	2	578.331685	1154.64882	0.69475	0.0004018	1.8089	0.0010461	2.5036	0.0014479	578.8357512273858	32.031	0.24129	32.027	31.93	32.172	-0.0037613	1179	49	0.9112251	0.029390633	0.90970564	369.3367	0	11.912598						152	11	2	NaN	NaN	NaN	0.49672	1	14486	14486		9.746	2.2056	1	20415			5250	5197	3046	3099	4150	4150					0.07767783270764994
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.8960288887332	3	460.896029	1379.66626	0.72469	0.00033401	-0.70828	-0.00032644	0.016413	7.5645E-06	461.2298031191834	20.573	0.1445	20.573	20.549	20.694	0	1344	37	0.8098828	0.022176862	0.8098828	491.4386	0	13.457001						126	7	4	NaN	NaN	NaN	0.20888	1	19886	19886		34.766	24.562	1	16978			5251	3665	3047	3100	4151	4151					-0.008389211942812835
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.8960288887332	3	460.896029	1379.66626	0.59426	0.00027389	-0.30037	-0.00013844	0.29388	0.00013545	461.23028219466306	21.007	0.24073	20.993	20.945	21.186	-0.014086	1344	37	0.8098828	0.022176862	0.8083634	491.4386	0	13.457001						167	11	3	NaN	NaN	NaN	0.14759	1	18953	18953		40.033	28.566	1	12449			5252	3665	3047	3100	4152	4152					-0.008389211942812835
FFKQSLCQQ	9	Unmodified	_FFKQSLCQQ_					0	0	0		chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.8550647795	3	376.855065	1127.54336	2.0849	0.00078571	-4.612	-0.0017381	-2.5271	-0.00095235	376.85341991535813	21.44	0.12053	21.426	21.426	21.547	-0.014006	1440	46	0.7506418	0.027824998	0.7491224	456.4985	0	16.9216						70	6	2	NaN	NaN	NaN	0.66615	1	13554	13554		2.1026	0.57698	1	4435.1			5253	143	3048	3101	4153	4153					-0.015305009171697748
FFKQSLCQQ	9	Unmodified						0	0	0		chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	chr3:42794271-42804436|121|18.52|0.0|20.82|-|1|None,HIGD1A|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	376.855065	1127.54336	1.3748	0.00051812	-5.8612	-0.0022088	-4.4864	-0.0016907	376.8527121795638	21.151	0.072266	21.151	21.079	21.151	0	1446	37	0.7469324	0.022258759	0.7469324	454.24265		13.53656	-0.13746	-0.00061242	-0.001095	NaN	2.1026	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5033.2			5254	143	3048	3101							-0.015305009171697748
FFLGCVRWLT	10	Unmodified	_FFLGCVRWLT_					0	0	0		ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENST00000397006.2_1_5:40777312-40798264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.3286189930001	2	621.328619	1240.64269	0.84929	0.00052769	-0.2531	-0.00015726	0.59619	0.00037043	621.3285588947358	24.405	0.16893	24.393	24.32	24.489	-0.012747	1146	40	0.93142134	0.023855448	0.9299019	377.21365	0	9.661163						155	8	3	NaN	NaN	NaN	0.69717	1	16804	16804		8.2448	0	1	15999			5255	6802	3049	3102	4154	4154					0.0319894176757316
FFLHVTANG	9	Unmodified	_FFLHVTANG_					0	0	0		nc|ENSG00000188162|Q6ZRI0-2|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.2612593218	2	503.261259	1004.50797	2.1802	0.0010972	4.3773	0.0022029	6.5575	0.0033001	503.76465346980683	19.563	0.072248	19.549	19.476	19.549	-0.014141	1335	31	0.8154261	0.018476725	0.81390667	331.08997	0	7.5021667						51	4	2	NaN	NaN	NaN	0.66529	1	8589	8589		2.1763	0.50597	1	2877.6			5256	5538	3050	3103	4155	4155					0.005892046173357812
FFLHVTANG	9	Unmodified						0	0	0		nc|ENSG00000188162|Q6ZRI0-2|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.261259	1004.50797	2.1108	0.0010623	4.4282	0.0022286	6.539	0.0032908	503.2628115643353	19.396	0.024004	19.396	19.396	19.42	0	1335	28	0.8154261	0.016628146	0.8154261	331.08997		6.751587	-0.076226	2.9092E-05	0.00075972	NaN	2.1763	27	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1775			5257	5538	3050	3103							0.005892046173357812
FFLKEGVRS	9	Unmodified	_FFLKEGVRS_					0	0	0			REV__ENST00000506739.1_1_4:14113647-14140203:+|nuORF	REV__ENST00000506739.1_1_4:14113647-14140203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.5379530302	3	361.537953	1081.59203	2.3651	0.00085508	5.9084	0.0021361	8.2736	0.0029912	361.54089826526035	18.676	0.047991	18.676	18.652	18.7	0	1464	34	0.73579943	0.020416021	0.73579943	447.70126	0	12.422272						43	3	2	NaN	NaN	NaN	0.67082	1	12064	12064		0.81135	0	1	3341.2	+		5258	12537	3051	3104	4156	4156					0.054497357142281544
FFLVLVMEQIT	11	Unmodified	_FFLVLVMEQIT_					0	0	0		nc|ENSG00000143570|Q9NY26-2|SLC39A1;ENSG00000143570|ENST00000356205|SLC39A1	nc|ENSG00000143570|Q9NY26-2|SLC39A1	nc|ENSG00000143570|Q9NY26-2|SLC39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3701494567	2	670.370149	1338.72575	1.9406	0.0013009	-4.2786	-0.0028682	-2.338	-0.0015673	670.3688497020743	25.756	0.21718	25.745	25.648	25.865	-0.0116	1086	58	0.9680805	0.03478682	0.9665611	391.74387	0	14.076843						236	10	3	NaN	NaN	NaN	0.59385	1	18527	18527		14.425	0.96197	1	28214			5259	3437	3052	3105	4157	4157					0.06993213704913614
FFLWCVFF	8	Unmodified	_FFLWCVFF_					0	0	0		ENST00000434693.6_1_3:29322867-29323038:+|nuORF	ENST00000434693.6_1_3:29322867-29323038:+|nuORF	ENST00000434693.6_1_3:29322867-29323038:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7698743061001	2	554.769874	1107.5252	1.0303	0.00057155	-9.7072	-0.0053853	-8.677	-0.0048137	554.7641009035489	35.577	0.07238	35.577	35.529	35.602	0.00052643	1236	37	0.876284	0.022090733	0.8747646	355.35278	0	8.958252						62	4	3	NaN	NaN	NaN	0.81214	1	12792	12792		7.5902	0.60588	1	4826.1			5260	6988	3053	3106	4158	4158					-0.024265911012207653
FFLWCVFF	8	Unmodified						0	0	0		ENST00000434693.6_1_3:29322867-29323038:+|nuORF	ENST00000434693.6_1_3:29322867-29323038:+|nuORF	ENST00000434693.6_1_3:29322867-29323038:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.769874	1107.5252	0.62496	0.00034671	-8.7187	-0.0048369	-8.0937	-0.0044901	554.7659533566816	35.578	0.07235	35.578	35.53	35.603	0	1233	37	0.87812483	0.02208829	0.87812483	356.09927		8.957306	0.00048854	0.00065875	0.0016801	NaN	7.5902	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5451.8			5261	6988	3053	3106							-0.024265911012207653
FFLYEPVWH	9	Unmodified	_FFLYEPVWH_					0	0	0		nc|ENSG00000175040|Q9Y4C5-2|CHST2;ENSG00000175040|ENST00000309575|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3056668254501	2	619.305667	1236.59678	0.86849	0.00053786	7.8862	0.004884	8.7547	0.0054219	619.3102026894035	33.913	0.072392	33.911	33.887	33.96	-0.0012474	1110	34	0.95342636	0.020157099	0.9519069	386.13925	0	8.163666						52	4	2	NaN	NaN	NaN	0.66196	1	16714	16714		2.4615	0.12338	1	4367.5			5262	4972	3054	3107	4159	4159					-0.01205380143005641
FFNFKNML	8	Unmodified	_FFNFKNML_					0	0	0			REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7678629334001	2	530.767863	1059.52117	1.9184	0.0010182	4.1942	0.0022262	6.1126	0.0032444	530.7701371504663	17.093	0.096052	17.093	17.069	17.165	0	1284	79	0.8468043	0.047925293	0.8468043	343.5892	0	19.445618						189	5	2	NaN	NaN	NaN	0.80071	1	11061	11061		9.1232	1.5356	1	24521	+		5263	13393	3055	3108	4160	4160					-0.006206805949204863
FFNYAEEAS	9	Unmodified	_FFNYAEEAS_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.22982180765	2	539.229822	1076.44509	1.6754	0.00090341	-4.6951	-0.0025317	-3.0197	-0.0016283	539.7278109273219	26.408	0.02413	26.397	26.397	26.421	-0.011137	1272	52	0.854179	0.031334043	0.8526596	346.5116	0	12.711182						68	2	3	NaN	NaN	NaN	0.59509	1	11498	11498		5.6942	0.50528	1	5721.3	+		5264	8480	3056	3109	4161	4161					-0.09007405961392578
FFNYAEEAS	9	Unmodified	_FFNYAEEAS_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.22982180765	2	539.229822	1076.44509	1.5495	0.00083556	3.4621	0.0018669	5.0117	0.0027024	539.2315314829293	26.36	0.048256	26.349	26.324	26.373	-0.011135	1269	37	0.8560222	0.022117019	0.85450274	347.25928	0	8.972107						76	3	3	NaN	NaN	NaN	0.59509	1	11500	11500		5.6942	0.2283	1	9976.3	+		5265	8480	3056	3109	4162	4162					-0.09007405961392578
FFPEPAGG	8	Unmodified	_FFPEPAGG_					0	0	0		INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.3828310205001	1	821.382831	820.375555	1.4387	0.0011817	4.0204	0.0033023	5.4591	0.004484	821.3858505657022	31.186	0.2413	31.181	31.109	31.35	-0.0050716	510	121	1.316029	0.07172394	1.3145095	267.98972	0	14.60553						822	11	4	NaN	NaN	NaN	0.59262	1	4911	4911		25.752	4.7993	1	176640			5266	2585	3057	3110	4163	4163					-0.04181820119470103
FFPLFSNIYIL	11	Unmodified	_FFPLFSNIYIL_					0	0	0			REV__ENST00000585682.5_1_4:159094075-159094168:-|nuORF	REV__ENST00000585682.5_1_4:159094075-159094168:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3788317685502	2	687.378832	1372.74311	1.5263	0.0010492	-7.0773	-0.0048648	-5.551	-0.0038157	687.3738898154648	32.177	0.16891	32.177	32.08	32.249	0	1065	43	0.9808926	0.025611699	0.9808926	396.82788	0	10.361389						191	8	3	NaN	NaN	NaN	0.37105	1	19832	19832		23.086	0	1	21558	+		5267	12880	3058	3111	4164	4164					0.07164877302238892
FFQKYYHYLNW	11	Unmodified	_FFQKYYHYLNW_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.8853439197002	2	804.885344	1607.75613	2.13	0.0017144	-4.5379	-0.0036525	-2.4078	-0.001938	804.8816596574032	28.074	0.072422	28.074	28.05	28.122	0	969	37	1.0393391	0.021877408	1.0393391	419.8595	0	8.837769						88	4	3	NaN	NaN	NaN	0.76251	1	20757	20757		2.5994	0.26131	1	5773.5	+		5268	9113	3059	3112	4165	4165					-0.023432915856574255
FFRIHHENEF	10	Unmodified	_FFRIHHENEF_					0	0	0			REV__ENSG00000206026|ENST00000579022|SMIM21	REV__ENSG00000206026|ENST00000579022|SMIM21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.2229160692	3	459.222916	1374.64692	1.6513	0.00075833	-5.1181	-0.0023503	-3.4667	-0.001592	459.21999536633484	18.388	0.096008	18.388	18.364	18.46	0	1404	31	0.77288127	0.018518806	0.77288127	469.00296	0	11.237671						74	5	2	NaN	NaN	NaN	0.77513	1	19849	19849		1.5256	1.1452	1	7305.3	+		5269	11272	3060	3113	4166	4166					-0.025418774851686976
FFRSGGNLI	9	Unmodified	_FFRSGGNLI_					0	0	0		ENST00000539206.1_1_12:6264276-6264504:-|nuORF	ENST00000539206.1_1_12:6264276-6264504:-|nuORF	ENST00000539206.1_1_12:6264276-6264504:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7745338725501	2	505.774534	1009.53451	1.4874	0.00075228	-8.5452	-0.004322	-7.0579	-0.0035697	506.2692727083674	23.754	0.12052	23.741	23.693	23.813	-0.013048	1314	67	0.8283535	0.040622413	0.8268341	336.31635	0	16.49295						173	6	2	NaN	NaN	NaN	0.060816	1	8790	8790		42.318	8.6193	1	27892			5270	7488	3061	3114	4167	4167					0.03012893508673642
FFRTPINLL	9	Unmodified	_FFRTPINLL_					0	0	0			REV__ENST00000426431.2_1_12:53806226-53806493:+|nuORF	REV__ENST00000426431.2_1_12:53806226-53806493:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8293090972501	2	560.829309	1119.64407	1.6526	0.00092685	-9.8337	-0.005515	-8.181	-0.0045882	561.3252882773907	30.27	0.2413	30.27	30.198	30.439	0	1212	52	0.8910048	0.031259656	0.8910048	361.27432	0	12.674805						156	11	2	NaN	NaN	NaN	0.46215	1	13668	13668		11.17	0.56537	1	12800	+		5271	12132	3062	3115	4168	4168					0.08902899127997443
FFSFSFFLP	9	Unmodified	_FFSFSFFLP_					0	0	0		AluSz6_dup23094|chr9:73154424-73154738:-|2.1665366981049035|0.2180234703704883|3.31|521.0|17|3|anti-sense	AluSz6_dup23094|chr9:73154424-73154738:-|2.1665366981049035|0.2180234703704883|3.31|521.0|17|3|anti-sense	AluSz6_dup23094|chr9:73154424-73154738:-|2.1665366981049035|0.2180234703704883|3.31|521.0|17|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.7840359263502	2	569.784036	1137.55352	1.9742	0.0011249	-2.1974	-0.001252	-0.22322	-0.00012719	569.783047139022	17.333	0.071835	17.333	17.285	17.357	0	1251	34	0.8670771	0.020259678	0.8670771	351.50504	0	8.213074						59	4	2	NaN	NaN	NaN	0.56671	1	14368	14368		6.8632	0	1	7136.6			5272	26	3063	3116	4169	4169					-0.009755699202742107
FFSHKVGYA	9	Unmodified	_FFSHKVGYA_					0	0	0			REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	REV__tr|U7SIU9|U7SIU9_FUSNUarginaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02241PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2690843539001	2	528.269084	1054.52362	1.0367	0.00054766	-5.891	-0.003112	-4.8543	-0.0025644	528.2671655906004	22.284	0.096462	22.27	22.222	22.318	-0.013731	1302	61	0.8357362	0.036889493	0.8342168	339.11902	0	14.96875						111	5	2	NaN	NaN	NaN	0.49672	1	10606	10606		9.746	1.4557	1	8387	+		5273	13397	3064	3117	4170	4170					-0.001465088656232183
FFSIYVPCL	9	Unmodified	_FFSIYVPCL_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.77789630345	2	544.777896	1087.54124	1.5989	0.00087102	-4.548	-0.0024776	-2.9491	-0.0016066	545.7759781605602	30.222	0.048237	30.222	30.198	30.246	0	1242	61	0.87260187	0.036837757	0.87260187	353.93948	0	14.941895						104	3	3	NaN	NaN	NaN	0.65388	1	12280	12280		3.1533	0	1	6253.6	+		5274	9199	3065	3118	4171	4171					0.0009707034500934242
FFSIYVPCL	9	Unmodified						0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.777896	1087.54124	1.5989	0.00087102	-4.548	-0.0024776	-2.9491	-0.0016066	545.7759781605602	30.222	0.048237	30.222	30.198	30.246	0	1242	61	0.87260187	0.036837757	0.87260187	353.93948		14.941895	0	0	0	NaN	3.1533	104	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6253.6	+		5275	9199	3065	3118							0.0009707034500934242
FFSPMLGEF	9	Unmodified	_FFSPMLGEF_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.4964805698	1	1074.49648	1073.4892	1.3382	0.0014379	0.06711	7.211E-05	1.4054	0.00151	1074.4969828791036	34.01	0.26548	34.01	33.89	34.155	0	159	139	1.5245869	0.08146274	1.5245869	309.25116	0	16.524109						892	12	5	NaN	NaN	NaN	8.7755E-05	1	11693	11693		123.66	76.336	1	224200			5276	4794	3066	3119	4172	4172					-0.04460093068723836
FFSPMLGEF	9	Unmodified	_FFSPMLGEF_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.4964805698	1	1074.49648	1073.4892	1.4741	0.0015839	0.16906	0.00018165	1.6432	0.0017656	1074.4969784307782	34.009	0.21723	34.008	33.936	34.153	-0.0012474	156	130	1.5263584	0.07609761	1.5248389	309.61047	0	15.435822						849	10	5	NaN	NaN	NaN	0.00017726	1	11391	11391		118.2	64.88	1	215770			5277	4794	3066	3119	4173	4173					-0.04460093068723836
FFSPMLGEF	9	Unmodified	_FFSPMLGEF_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.4964805698	1	1074.49648	1073.4892	1.3608	0.0014622	1.1385	0.0012233	2.4993	0.0026854	1074.496819105261	35.215	0.048248	35.215	35.215	35.263	-4.5776E-05	159	76	1.5245869	0.044261456	1.5230675	309.25113	0	8.978119						92	3	2	NaN	NaN	NaN	0.31737	1	11392	11392		17.799	5.7503	1	5938.1			5278	4794	3066	3119	4174	4174					-0.04460093068723836
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(55)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.4913951919	1	1090.4914	1089.48412	2.0001	0.0021811	-0.66437	-0.00072448	1.3357	0.0014566	1090.4909589961464	30.777	0.31373	30.777	30.68	30.994	0	117	130	1.5493695	0.076129794	1.5493695	314.2195	0	15.439484						1084	14	4	NaN	NaN	NaN	0.032826	1	12359	12359		55.413	26.747	1	309200			5279	4794	3066	3120	4175	4175		507			-0.057043969313554044
FFSPMLGEF	9	Oxidation (M)	_FFSPM(Oxidation (M))LGEF_		FFSPM(1)LGEF		FFSPM(67)LGEF	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.4913951919	1	1090.4914	1089.48412	1.4228	0.0015516	-0.2128	-0.00023206	1.21	0.0013195	1090.4916150112572	30.752	0.31369	30.746	30.625	30.939	-0.0057545	114	142	1.5511382	0.08321178	1.5496187	314.57825	0	16.875732						1048	14	4	NaN	NaN	NaN	0.023828	1	12053	12053		67.154	28.236	1	310480			5280	4794	3066	3120	4176	4176		507			-0.057043969313554044
FFSVATCDCH	10	Unmodified	_FFSVATCDCH_					0	0	0			REV__ENST00000432176.6_1_7:22983570-22983795:-|nuORF	REV__ENST00000432176.6_1_7:22983570-22983795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.4441274233	1	1129.44413	1128.43685	1.1077	0.0012511	4.7205	0.0053316	5.8283	0.0065827	1129.4495177452775	36.107	0.26515	36.108	36.012	36.277	0.0011024	120	100	1.5476005	0.058387995	1.5460811	313.72516	0	11.836273						316	12	2	NaN	NaN	NaN	0.69717	1	13570	13570		8.2448	0.65722	1	23845	+		5281	12161	3067	3121	4177	4177					-0.12222999474010976
FFSVRLDYP	9	Unmodified	_FFSVRLDYP_					0	0	0			REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2952991044001	2	572.295299	1142.57605	0.86123	0.00049288	-8.1331	-0.0046545	-7.2719	-0.0041617	572.2899699309801	28.749	0.096514	28.74	28.692	28.789	-0.0083504	1200	64	0.89836043	0.03861493	0.896841	364.16785	0	15.65329						117	5	2	NaN	NaN	NaN	0.27608	1	14067	14067		20.449	2.479	1	15510	+		5282	12768	3068	3122	4178	4178					0.010460294773338319
FFSVRLDYP	9	Unmodified						0	0	0			REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.295299	1142.57605	1.6157	0.00092466	-7.5882	-0.0043427	-5.9725	-0.0034181	572.2907614934779	28.605	0.12064	28.605	28.556	28.677	0	1203	55	0.8965218	0.03309667	0.8965218	363.42255		13.416382	-0.06784	0.00029573	-0.00015958	NaN	20.449	141	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12798	+		5283	12768	3068	3122							0.010460294773338319
FFSVRLDYP	9	Unmodified						0	0	0			REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	REV__ENST00000556419.5_1_14:23468454-23479348:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.295299	1142.57605	0.86123	0.00049288	-8.1331	-0.0046545	-7.2719	-0.0041617	572.2899699309801	28.749	0.096514	28.74	28.692	28.789	-0.0083504	1200	64	0.89836043	0.03861493	0.896841	364.16785		15.65329	0.06784	-0.00032793	0.00015958	NaN	20.449	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15510	+		5284	12768	3068	3122							0.010460294773338319
FFTEEDFPLG	10	Unmodified	_FFTEEDFPLG_					0	0	0		ENST00000515429.1_1_3:128598503-128612413:+|nuORF	ENST00000515429.1_1_3:128598503-128612413:+|nuORF	ENST00000515429.1_1_3:128598503-128612413:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.1852450297333	3	401.185245	1200.53391	0.97956	0.00039298	7.9674	0.0031964	8.947	0.0035894	401.5225948779562	27.326	0.072395	27.326	27.302	27.374	0	1476	52	0.72837335	0.03157264	0.72837335	442.63113	0	19.186646						147	4	4	NaN	NaN	NaN	0.62764	1	16486	16486		7.1304	0.70044	1	19895			5285	7375	3069	3123	4179	4179					-0.05833990721725968
FFTFPIHF	8	Unmodified	_FFTFPIHF_					0	0	0		nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	nc|ENSG00000240268|A6NHM9|MOXD2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5349149866	1	1055.53491	1054.52764	1.3436	0.0014182	2.0571	0.0021713	3.4007	0.0035895	1056.5379439649992	30.848	0.07239	30.842	30.794	30.866	-0.0057545	156	136	1.5263584	0.07971299	1.5248389	309.6811	0	16.172882						192	4	2	NaN	NaN	NaN	0.80071	1	10610	10610		9.1232	1.5828	1	23435			5286	8046	3070	3124	4180	4180					0.002555806280724937
FFTQAGYLNT	10	Unmodified	_FFTQAGYLNT_					0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2823886944001	2	581.282389	1160.55022	1.3408	0.00077939	6.5535	0.0038094	7.8943	0.0045888	581.2862066027204	20.549	0.12029	20.535	20.463	20.584	-0.014141	1227	64	0.88180584	0.03863573	0.8802864	357.39105	0	15.6588745						166	6	3	NaN	NaN	NaN	0.47445	1	14646	14646		20.513	8.4646	1	17090	+		5287	11384	3071	3125	4181	4181					-0.023628647649502454
FFTQAGYLNT	10	Unmodified						0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.282389	1160.55022	1.5255	0.00088672	5.3817	0.0031283	6.9072	0.004015	581.2850244732399	20.501	0.096184	20.501	20.477	20.573	0	1224	52	0.883646	0.031286716	0.883646	358.13687		12.680328	-0.017058	-0.00072871	0.0016798	NaN	20.513	112	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13974	+		5288	11384	3071	3125							-0.023628647649502454
FFTQAGYLNT	10	Unmodified						0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.282389	1160.55022	1.3408	0.00077939	6.5535	0.0038094	7.8943	0.0045888	581.2862066027204	20.549	0.12029	20.535	20.463	20.584	-0.014141	1227	64	0.88180584	0.03863573	0.8802864	357.39105		15.6588745	0.017058	0.00063358	-0.0016798	NaN	20.513	166	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17090	+		5289	11384	3071	3125							-0.023628647649502454
FFWKGCLVS	9	Unmodified	_FFWKGCLVS_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7756879655001	2	543.775688	1085.53682	1.809	0.00098366	3.2763	0.0017816	5.0853	0.0027652	543.7774401593601	22.959	0.12058	22.959	22.863	22.983	0	1248	67	0.8689189	0.040499628	0.8689189	352.4537	0	16.427582						143	6	4	NaN	NaN	NaN	0.49672	1	12199	12199		9.746	2.1584	1	15144	+		5290	8511	3072	3126	4182	4182					-0.0025239407789285906
FFYFAPLSVA	10	Unmodified	_FFYFAPLSVA_					0	0	0			REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	REV__ENST00000338785.7_1_21:38885904-38886156:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.3025928202501	2	581.302593	1160.59063	2.112	0.0012277	-3.3456	-0.0019448	-1.2336	-0.00071709	581.3010462309517	25.395	0.14478	25.395	25.346	25.491	0	1185	49	0.90755045	0.029403389	0.90755045	367.8251	0	11.917053						176	7	4	NaN	NaN	NaN	0.40641	1	15178	15178		23.334	0.21685	1	26474	+		5291	11773	3073	3127	4183	4183					0.016761016254804417
FFYGHFFR	8	Unmodified	_FFYGHFFR_					0	0	0		ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.1836216344334	3	374.183622	1119.52904	1.4159	0.0005298	-2.122	-0.00079402	-0.70611	-0.00026422	374.18280335593704	24.092	0.16895	24.092	24.044	24.213	0	1422	37	0.7617651	0.022239447	0.7617651	463.30307	0	13.52597						207	8	3	NaN	NaN	NaN	0.73961	1	13645	13645		16.584	8.3393	1	34182			5292	5149	3074	3128	4184	4184					-0.02594785283145029
FFYKSPGEK	9	Unmodified	_FFYKSPGEK_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7820245536501	2	551.782025	1101.5495	1.0787	0.00059518	5.4431	0.0030034	6.5218	0.0035986	551.7843061748785	29.931	0.096504	29.925	29.901	29.997	-0.0064087	1239	49	0.87444305	0.02945429	0.8729236	354.62982	0	11.945129						115	5	2	NaN	NaN	NaN	0.67989	1	12575	12575		0.92586	0.65047	1	11448	+		5293	10649	3075	3129	4185	4185					0.0027834058601001743
FGAADGTV	8	Unmodified	_FGAADGTV_					0	0	0			REV__tr|U7T594|U7T594_FUSNUElectrontransferflavoprotein-quinoneoxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00174PE=3SV=1	REV__tr|U7T594|U7T594_FUSNUElectrontransferflavoprotein-quinoneoxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00174PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3464455142	1	737.346446	736.339169	0.84841	0.00062557	-7.6731	-0.0056577	-6.8246	-0.0050321	737.3407116873597	31.284	0.31372	31.284	31.235	31.549	0	615	100	1.2531329	0.05943513	1.2531329	255.6611	0	12.125809						541	14	4	NaN	NaN	NaN	0.76633	1	3842	3842		13.737	0	1	105630	+		5294	13611	3076	3130	4186	4186					-0.03954697016195041
FGAAGSSA	8	Unmodified	_FGAAGSSA_					0	0	0			REV__ENST00000469781.5_1_1:228288595-228288724:-|nuORF	REV__ENST00000469781.5_1_1:228288595-228288724:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3045806995	1	667.304581	666.297304	1.6721	0.0011158	6.3345	0.004227	8.0065	0.0053428	667.308890756703	22.501	0.16861	22.501	22.332	22.501	0	705	49	1.1990347	0.028901935	1.1990347	245.09346	0	5.9078064						160	8	2	NaN	NaN	NaN	0.8439	1	2479	2479		3.1533	1.7138	1	15576	+		5295	12319	3077	3131	4187	4187					-0.04919252704712562
FGAATFAS	8	Unmodified	_FGAATFAS_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3671809563	1	771.367181	770.359904	1.989	0.0015342	-7.9901	-0.0061633	-6.0012	-0.0046291	771.3611836708973	18.916	0.12006	18.916	18.892	19.012	0	1404	67	0.77288127	0.040750206	0.77288127	157.554	0	8.307053						140	6	2	NaN	NaN	NaN	0.8439	1	4357	4357		3.1533	0	1	12286			5296	3952	3078	3132	4188	4188					-0.03446106636533841
FGAATFAS	8	Unmodified						0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	771.367181	770.359904	1.8274	0.0014096	-8.0684	-0.0062237	-6.2411	-0.0048141	771.3603831063439	19.058	0.1201	19.044	18.996	19.116	-0.014059	1410	61	0.76917666	0.037041664	0.7676573	156.79881		7.551056	0.063777	-3.1617E-05	-0.002612	NaN	3.1533	136	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10765			5297	3952	3078	3132							-0.03446106636533841
FGAGATEP	8	Unmodified	_FGAGATEP_					0	0	0			REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3464455142	1	749.346446	748.339169	1.0073	0.00075481	-6.6344	-0.0049715	-5.6271	-0.0042167	749.3415257931613	32.997	0.16896	32.997	32.973	33.142	0	630	55	1.2441287	0.032431245	1.2441287	253.74965	0	6.614624						110	8	2	NaN	NaN	NaN	0.80071	1	4018	4018		9.1232	3.0329	1	6865.5	+		5298	12445	3079	3133	4189	4189					-0.045066970161883546
FGAPGPPF	8	Unmodified	_FGAPGPPF_					0	0	0			REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.3930017763	1	789.393002	788.385725	1.3629	0.0010758	-10.566	-0.008341	-9.2035	-0.0072652	789.3851765991136	27.011	0.1931	27.001	26.929	27.122	-0.010126	519	88	1.310647	0.05204153	1.3091276	267.07214	0	10.604553						335	9	4	NaN	NaN	NaN	0.71635	1	4514	4514		18.034	3.0216	1	46642	+		5299	10624	3080	3134	4190	4190					-0.016932123942410726
FGASLDGA	8	Unmodified	_FGASLDGA_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3464455142001	1	737.346446	736.339169	1.2147	0.00089567	-8.3806	-0.0061794	-7.1659	-0.0052838	737.3397149851529	31.283	0.38613	31.277	31.205	31.591	-0.0050716	612	79	1.2549332	0.046820045	1.2534138	256.02838	0	9.552139						562	17	3	NaN	NaN	NaN	0.65075	1	3767	3767		22.126	4.346	1	112650	+		5300	8508	3081	3135	4191	4191					-0.039546970161836725
FGASLDGA	8	Unmodified						0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.346446	736.339169	0.84841	0.00062557	-7.6731	-0.0056577	-6.8246	-0.0050321	737.3407116873597	31.284	0.31372	31.284	31.235	31.549	0	615	100	1.2531329	0.05943513	1.2531329	255.6611		12.125809	0.0030445	0.00020236	-0.00014043	NaN	22.126	541	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105630	+		5301	8508	3081	3135							-0.039546970161836725
FGASLDGA	8	Unmodified						0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.346446	736.339169	1.2147	0.00089567	-8.3806	-0.0061794	-7.1659	-0.0052838	737.3397149851529	31.283	0.38613	31.277	31.205	31.591	-0.0050716	612	79	1.2549332	0.046820045	1.2534138	256.02838		9.552139	-0.0030445	-0.00031939	0.00014043	NaN	22.126	562	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112650	+		5302	8508	3081	3135							-0.039546970161836725
FGCRFQHKN	9	Unmodified	_FGCRFQHKN_					0	0	0		ENST00000459870.6_1_3:49135615-49135771:-|nuORF;ENST00000482248.7_1_3:49133464-49135771:-|nuORF	ENST00000459870.6_1_3:49135615-49135771:-|nuORF	ENST00000459870.6_1_3:49135615-49135771:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7745422600501	2	568.774542	1135.53453	0.98063	0.00055776	2.4194	0.0013761	3.4	0.0019338	568.7753170227621	28.145	0.31374	28.137	27.943	28.257	-0.0089798	1206	100	0.894683	0.06073302	0.89316356	362.70392	0	24.621124						559	14	4	NaN	NaN	NaN	0.47587	1	13826	13826		10.605	0.24481	1	63096			5303	7069	3082	3136	4192	4192					-0.027814297629902285
FGCSVCKV	8	Unmodified	_FGCSVCKV_					0	0	0			REV__ENSG00000140323|ENST00000267889|DISP2	REV__ENSG00000140323|ENST00000267889|DISP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.3899070083	1	842.389907	841.382631	2.3161	0.0019511	6.5884	0.00555	8.9045	0.007501	842.396172114525	41.111	0.024002	41.118	41.094	41.118	0.0074959	471	34	1.3393306	0.019701958	1.3378111	272.62256	0	4.010376						29	2	2	NaN	NaN	NaN	0.84207	1	5150	5150		3.5732	2.1337	1	1442.5	+		5304	9792	3083	3137	4193	4193					-0.044405468349168586
FGEEECESA	9	Unmodified	_FGEEECESA_					0	0	0			REV__ENSG00000112936|ENST00000313164|C7	REV__ENSG00000112936|ENST00000313164|C7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.6818471598	2	500.681847	999.349141	2.2462	0.0011247	-5.8893	-0.0029487	-3.6431	-0.001824	500.6796310017045	18.221	0.047932	18.221	18.221	18.268	0	1371	64	0.79324204	0.038857937	0.79324204	322.10498	0	15.778717						62	3	2	NaN	NaN	NaN	0.56671	1	8543	8543		6.8632	1.6743	1	4706.8	+		5305	9134	3084	3138	4194	4194					-0.15055921863768162
FGEIEECTI	9	Unmodified	_FGEIEECTI_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.460488994	1	1040.46049	1039.45321	1.5135	0.0015747	-1.3013	-0.001354	0.21215	0.00022074	1040.4594271858596	28.894	0.19312	28.894	28.846	29.039	0	207	79	1.496219	0.04614687	1.496219	303.62302	0	9.364441						358	9	3	NaN	NaN	NaN	0.14301	1	10172	10172		29.598	0	1	38379			5306	3652	3085	3139	4195	4195					-0.06493595036272382
FGEISRYFSD	10	Unmodified	_FGEISRYFSD_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1	REV__nc|ENSG00000171100|Q13496-2|MTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.7827528351501	2	610.782753	1219.55095	1.1212	0.0006848	-9.6791	-0.0059118	-8.5579	-0.005227	610.7765022177899	20.285	0.072153	20.285	20.261	20.333	0	1182	40	0.9093879	0.023881197	0.9093879	368.36047	0	9.673431						53	4	2	NaN	NaN	NaN	0.77665	1	16963	16963		1.3312	0.4053	1	4152.9	+		5307	10611	3086	3140	4196	4196					-0.05004070115910508
FGEPGAKS	8	Unmodified	_FGEPGAKS_					0	0	0		chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	792.3886446799	1	792.388645	791.381368	2.1413	0.0016967	4.3537	0.0034498	6.4949	0.0051465	792.392014600314	30.222	0.26544	30.222	30.198	30.463	0	546	118	1.294491	0.07003164	1.294491	263.76288	0	14.269501						594	12	3	NaN	NaN	NaN	0.67593	1	4637	4637		20.555	1.4371	1	107650			5308	110	3087	3141	4197	4197					-0.022667216078048114
FGEPGAKS	8	Unmodified						0	0	0		chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	chr1:153040779-153041078|359|12.22|0.23|5.72|-|2|SPRR2D,SPRR2D|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	792.388645	791.381368	1.4147	0.001121	5.3224	0.0042174	6.7371	0.0053384	792.3928560983255	30.221	0.26543	30.214	30.166	30.431	-0.0064106	540	112	1.2980826	0.066440344	1.2965631	264.49466		13.53775	-0.0036873	0.00044855	0.0010361	NaN	20.555	620	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111290			5309	110	3087	3141							-0.022667216078048114
FGEPGARL	8	Unmodified	_FGEPGARL_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4468282608001	1	846.446828	845.439552	1.7331	0.001467	-1.0625	-0.00089933	0.67063	0.00056765	846.4464162723112	55.124	0.09642	55.124	55.076	55.172	0	426	91	1.3661768	0.053621292	1.3661768	278.06573	0	10.913849						117	5	2	NaN	NaN	NaN	0.8439	1	5332	5332		3.1533	0	1	16073			5310	5445	3088	3142	4198	4198					0.010649600374676993
FGERFSKDF	9	Unmodified	_FGERFSKDF_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7747308378	2	566.774731	1131.53491	2.4139	0.0013681	-1.8374	-0.0010414	0.57651	0.00032675	566.7741375416995	23.296	0.1688	23.296	23.224	23.393	0	1224	70	0.883646	0.042310774	0.883646	358.24475	0	17.153473						345	8	5	NaN	NaN	NaN	0.23112	1	14133	14133		23.334	0.21685	1	145870			5311	2975	3089	3143	4199	4199					-0.025597315621553207
FGGAPSTS	8	Unmodified	_FGGAPSTS_					0	0	0		ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	ENSG00000067445|ENST00000173898|TRO	ENSG00000067445|ENST00000173898|TRO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.33079545	1	723.330795	722.323519	1.5245	0.0011027	1.9309	0.0013967	3.4554	0.0024994	723.3330584779504	28.725	0.072407	28.716	28.668	28.74	-0.0083504	612	37	1.2549332	0.021602273	1.2534138	256.1191	0	4.4088135						83	4	3	NaN	NaN	NaN	0.82332	1	3555	3555		6.0903	0	1	4553.1			5312	718	3090	3144	4200	4200					-0.04874983533238719
FGGGGGGK	8	Unmodified	_FGGGGGGK_					0	0	0		ENST00000428095.1_1_3:196098887-196159300:-|nuORF;ENST00000493566.1_1_3:196127571-196159297:-|nuORF	ENST00000428095.1_1_3:196098887-196159300:-|nuORF	ENST00000428095.1_1_3:196098887-196159300:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.3100004284	1	636.31	635.302724	1.7957	0.0011426	-10.8	-0.0068723	-9.0046	-0.0057297	636.3065551845616	35.722	0.096405	35.722	35.698	35.794	0.00052643	1140	31	0.93509084	0.018347383	0.9335714	191.3285	0	3.7540436						64	5	2	NaN	NaN	NaN	0.84207	1	1540	1540		3.5732	2.1337	1	3347.3			5313	6958	3091	3145	4201	4201					-0.02951529122242391
FGGGHGGA	8	Unmodified	_FGGGHGGA_					0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.2895993373	1	659.289599	658.282323	0.030055	1.9815E-05	-1.0336	-0.00068144	-1.0035	-0.00066163	659.2906944803606	53.312	0.31171	53.312	53.24	53.552	-0.00053406	789	133	1.1483859	0.07973611	1.1468664	234.79791	0	16.30278						968	14	6	NaN	NaN	NaN	0.84876	1	2154	2154		0.39566	0.39566	1	217810	+		5314	13029	3092	3146	4202	4202					-0.06048699782047606
FGGGHGGA	8	Unmodified						0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.289599	658.282323	1.9436	0.0012814	-2.6143	-0.0017236	-0.67064	-0.00044215	659.2895676304522	53.314	0.33587	53.314	53.194	53.53	0	789	217	1.1483859	0.13060367	1.1483859	234.79791		26.70311	0.0011311	-0.00056154	0.00075972	NaN	0.39566	1200	15	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303820	+		5315	13029	3092	3146							-0.06048699782047606
FGGGHGGA	8	Unmodified						0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.289599	658.282323	0.030055	1.9815E-05	-1.0336	-0.00068144	-1.0035	-0.00066163	659.2906944803606	53.312	0.31171	53.312	53.24	53.552	-0.00053406	789	133	1.1483859	0.07973611	1.1468664	234.79791		16.30278	-0.0011311	0.00048058	-0.00075972	NaN	0.39566	968	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217810	+		5316	13029	3092	3146							-0.06048699782047606
FGGGKATA	8	Unmodified	_FGGGKATA_					0	0	0			REV__ENST00000329138.8_1_17:79668995-79669127:+|nuORF	REV__ENST00000329138.8_1_17:79668995-79669127:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073	1	708.367515	707.360239	0.91567	0.00064863	6.6495	0.0047103	7.5652	0.0053589	708.3716733586313	29.304	0.12067	29.296	29.272	29.393	-0.0077229	1044	58	0.99369496	0.03473431	0.9921755	202.88286	0	7.0917206						128	6	2	NaN	NaN	NaN	0.84756	1	3297	3297		1.072	0.67635	1	10475	+		5317	11741	3093	3147	4203	4203					-0.0051468691667651
FGGLAGFL	8	Unmodified	_FGGLAGFL_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8;SLC7A8|p.R122Kfs*104|1|0.11|ENSG00000092068|chr14:23165430-23165431|-/TTTT|frameshift_variant;ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000092068|ENST00000316902|SLC7A8;ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000092068|ENST00000316902|SLC7A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.4243019047002	1	781.424302	780.417025	1.4724	0.0011505	-0.15867	-0.00012399	1.3137	0.0010266	781.4244652476378	32.539	0.096489	32.539	32.49	32.587	0	480	61	1.3339561	0.035823703	1.3339561	271.8693	0	7.301117						113	5	2	NaN	NaN	NaN	0.81214	1	4497	4497		7.5902	0	1	8672.3			5318	1087;2679	3094	3148	4204	4204					0.018033606398603297
FGGPGFPV	8	Unmodified	_FGGPGFPV_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	CON__Q5XQN5;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.3930017763	1	777.393002	776.385725	1.8658	0.0014504	-3.138	-0.0024394	-1.2722	-0.000989	777.3924124911431	26.529	0.16894	26.529	26.481	26.65	0	540	85	1.2980826	0.050292492	1.2980826	264.5818	0	10.250885						263	8	3	NaN	NaN	NaN	0.46677	1	4446	4446		32.869	14.835	1	21392		+	5319	219;189	3095	3149	4205	4205					-0.011412123942477592
FGGSSTQT	8	Unmodified	_FGGSSTQT_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.3471737957001	1	784.347174	783.339897	1.291	0.0010126	-6.689	-0.0052465	-5.398	-0.0042339	784.341900606544	28.097	0.14477	28.088	28.04	28.185	-0.0089798	567	61	1.2819146	0.035942435	1.2803952	261.24606	0	7.324829						191	7	2	NaN	NaN	NaN	0.72043	1	4453	4453		17.78	1.3637	1	22103	+		5320	8370	3096	3150	4206	4206					-0.060439023671278846
FGGSSTQT	8	Unmodified						0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	784.347174	783.339897	1.9676	0.0015432	-7.6075	-0.0059669	-5.64	-0.0044237	784.3409222802264	28.074	0.16895	28.074	28.05	28.219	0	567	52	1.2819146	0.030555964	1.2819146	261.24606		6.227112	-0.0072073	-0.00034009	0.00075972	NaN	17.78	196	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21504	+		5321	8370	3096	3150							-0.060439023671278846
FGGSSTQT	8	Unmodified						0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	784.347174	783.339897	1.291	0.0010126	-6.689	-0.0052465	-5.398	-0.0042339	784.341900606544	28.097	0.14477	28.088	28.04	28.185	-0.0089798	567	61	1.2819146	0.035942435	1.2803952	261.24606		7.324829	0.0072073	0.00038032	-0.00075972	NaN	17.78	191	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22103	+		5322	8370	3096	3150							-0.060439023671278846
FGGVLMTL	8	Unmodified	_FGGVLMTL_					0	0	0		nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000404056.1_1_22:24179392-24180785:-|nuORF	nc|ENSG00000099958|Q96Q80-5|DERL3	nc|ENSG00000099958|Q96Q80-5|DERL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.4538874736	1	837.453887	836.446611	0.89011	0.00074542	0.47118	0.00039459	1.3613	0.00114	837.454421370309	31.259	0.12062	31.259	31.211	31.332	0	435	52	1.360811	0.030412912	1.360811	277.02124	0	6.191162						99	6	2	NaN	NaN	NaN	0.55881	1	5223	5223		27.861	10.08	1	8158.7			5323	1177	3097	3151	4207	4207					0.021845565936814637
FGGVLMTL	8	Unmodified	_FGGVLMTL_					0	0	0		nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000404056.1_1_22:24179392-24180785:-|nuORF	nc|ENSG00000099958|Q96Q80-5|DERL3	nc|ENSG00000099958|Q96Q80-5|DERL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4538874736	1	837.453887	836.446611	0.89961	0.00075338	-0.75539	-0.0006326	0.14422	0.00012078	837.4535646483555	31.258	0.096556	31.253	31.229	31.326	-0.0050716	435	61	1.360811	0.03578937	1.3592916	277.02124	0	7.285675						109	5	2	NaN	NaN	NaN	0.13697	1	5096	5096		56.971	37.686	1	9039.1			5324	1177	3097	3151	4208	4208					0.021845565936814637
FGGVLMTL	8	Oxidation (M)	_FGGVLM(Oxidation (M))TL_		FGGVLM(1)TL		FGGVLM(63)TL	0	0	1		nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000404056.1_1_22:24179392-24180785:-|nuORF	nc|ENSG00000099958|Q96Q80-5|DERL3	nc|ENSG00000099958|Q96Q80-5|DERL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4488020957001	1	853.448802	852.441526	1.6917	0.0014438	-0.84332	-0.00071973	0.84841	0.00072407	853.4470857158502	27.567	0.024157	27.567	27.543	27.567	0	417	46	1.3715409	0.026814818	1.3715409	279.12085	0	5.4570923						54	2	2	NaN	NaN	NaN	0.10499	1	5420	5420		63.31	37.558	1	4763.6			5325	1177	3097	3152	4209	4209		128			0.009402527310726327
FGHAEVVSL	9	Unmodified	_FGHAEVVSL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.7532671142	2	479.753267	957.491981	1.3733	0.00065885	-2.3778	-0.0011408	-1.0045	-0.00048193	479.75195366952767	20.718	0.16868	20.718	20.67	20.838	0	1341	58	0.8117308	0.035103858	0.8117308	329.80814	0	14.262817						176	8	3	NaN	NaN	NaN	0.12945	1	7275	7275		31.561	1.9627	1	31932			5326	4883	3098	3153	4210	4210					0.01153498380426754
FGHAEVVSL	9	Unmodified	_FGHAEVVSL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.7532671142	2	479.753267	957.491981	1.2492	0.00059933	-0.27588	-0.00013235	0.97337	0.00046698	479.75335880765317	20.742	0.12037	20.728	20.704	20.825	-0.014088	1338	61	0.81357855	0.036949456	0.8120591	330.55887	0	15.012665						195	6	4	NaN	NaN	NaN	0.094712	1	7138	7138		36.586	13.252	1	34345			5327	4883	3098	3153	4211	4211					0.01153498380426754
FGHSGSPQ	8	Unmodified	_FGHSGSPQ_					0	0	0			REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.3634925619	1	816.363493	815.356216	2.1597	0.0017631	-8.9379	-0.0072966	-6.7782	-0.0055335	816.3565164530861	28.194	0.19302	28.194	28.17	28.363	0	540	49	1.2980826	0.028729439	1.2980826	264.3621	0	5.850891						169	9	3	NaN	NaN	NaN	0.78264	1	4956	4956		11.548	0.94349	1	16079	+		5328	12489	3099	3154	4212	4212					-0.058847764103916234
FGHSGSPQ	8	Unmodified						0	0	0			REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	816.363493	815.356216	2.1597	0.0017631	-8.9379	-0.0072966	-6.7782	-0.0055335	816.3565164530861	28.194	0.19302	28.194	28.17	28.363	0	540	49	1.2980826	0.028729439	1.2980826	264.3621		5.850891	-0.0072266	-9.0677E-05	0.00075972	NaN	11.548	169	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16079	+		5329	12489	3099	3154							-0.058847764103916234
FGHSGSPQ	8	Unmodified						0	0	0			REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	816.363493	815.356216	1.3022	0.0010631	-8.7477	-0.0071413	-7.4455	-0.0060783	816.3560986212419	28.218	0.19307	28.209	28.161	28.354	-0.0089779	540	49	1.2980826	0.028729439	1.2965631	264.3621		5.850891	0.0072266	6.4561E-05	-0.00075972	NaN	11.548	186	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19502	+		5330	12489	3099	3154							-0.058847764103916234
FGLGPSMGFYQ	11	Unmodified	_FGLGPSMGFYQ_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2787917604501	2	602.278792	1202.54303	0.87697	0.00052818	-6.3765	-0.0038404	-5.4995	-0.0033122	602.2746702455081	32.056	0.12068	32.056	31.983	32.104	0	1218	94	0.8873258	0.057002902	0.8873258	359.4808	0	23.093506						174	6	3	NaN	NaN	NaN	0.73455	1	16538	16538		5.1889	0.45981	1	16232			5331	2851	3100	3155	4213	4213					-0.05013920637020419
FGMEQEYTL	9	Oxidation (M)	_FGM(Oxidation (M))EQEYTL_		FGM(1)EQEYTL		FGM(40)EQEYTL	0	0	1		ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENSG00000135821|ENST00000331872|GLUL	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.4819527175998	1	1133.48195	1132.47468	2.5798	0.0029241	-0.54877	-0.00062202	2.031	0.0023021	1133.4822461905396	23.007	0.14438	23.007	22.983	23.128	0	111	58	1.5529068	0.03360665	1.5529068	314.7873	0	6.8123474						150	7	2	NaN	NaN	NaN	0.071077	1	14164	14164		40.006	19.557	1	16317			5332	2965	3101	3156	4214	4214		338			-0.08626210007560076
FGMEQEYTL	9	Oxidation (M)	_FGM(Oxidation (M))EQEYTL_		FGM(1)EQEYTL		FGM(46)EQEYTL	0	0	1		ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENSG00000135821|ENST00000331872|GLUL	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.4819527175998	1	1133.48195	1132.47468	1.3668	0.0015492	0.59995	0.00068003	1.9667	0.0022292	1133.482704766058	23.031	0.12039	23.017	22.969	23.09	-0.013294	111	70	1.5529068	0.040690303	1.5513873	314.7873	0	8.248291						195	6	3	NaN	NaN	NaN	0.052553	1	13715	13715		45.827	27.857	1	18089			5333	2965	3101	3156	4215	4215		338			-0.08626210007560076
FGNAMCKLFT	10	Unmodified	_FGNAMCKLFT_					0	0	0		ENSG00000121807|ENST00000445132|CCR2;nc|ENSG00000121807|P41597|CCR2	ENSG00000121807|ENST00000445132|CCR2	ENSG00000121807|ENST00000445132|CCR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.26991248335	2	566.269912	1130.52527	1.216	0.00068856	6.4807	0.0036699	7.6967	0.0043584	566.7738193752472	34.009	0.072426	34.008	33.984	34.056	-0.0012474	1230	34	0.8799654	0.020246506	0.878446	356.75638	0	8.208374						54	4	2	NaN	NaN	NaN	0.65442	1	13638	13638		11.17	3.5827	1	5097.4			5334	2302	3102	3157	4216	4216					-0.03476959163549509
FGNTAHLG	8	Unmodified	_FGNTAHLG_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D;ENST00000558431.1_1_15:48058024-48059292:+|nuORF;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;SEMA6D|p.A895Pfs*13|1|0.12|ENSG00000137872|chr15:47771239-47771239|C/-|frameshift_variant	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.70357726739996	2	408.703577	815.392602	2.7069	0.0011063	-4.734	-0.0019348	-2.0272	-0.00082851	408.7004307941815	31.21	0.02413	31.205	31.181	31.205	-0.0050716	1401	31	0.77473325	0.018520832	0.7732138	315.55115	0	7.5436096						29	2	2	NaN	NaN	NaN	0.84727	1	4856	4856		1.2418	0	1	1299.3			5335	3114	3103	3158	4217	4217					-0.022478995136793856
FGQASVAF	8	Unmodified	_FGQASVAF_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	826.409380122	1	826.40938	825.402104	1.2744	0.0010532	6.9873	0.0057744	8.2617	0.0068275	826.4146903039954	33.89	0.072392	33.89	33.89	33.962	0	489	43	1.3285799	0.02508998	1.3285799	270.5184	0	5.108673						46	4	2	NaN	NaN	NaN	0.82797	1	5096	5096		5.4659	0.55612	1	3047	+		5336	10884	3104	3159	4218	4218					-0.017581312281436112
FGQASVAF	8	Unmodified						0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	826.40938	825.402104	1.2744	0.0010532	6.9873	0.0057744	8.2617	0.0068275	826.4146903039954	33.89	0.072392	33.89	33.89	33.962	0	489	43	1.3285799	0.02508998	1.3285799	270.5184		5.108673	-0.010822	-0.0006277	-0.0001364	NaN	5.4659	46	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047	+		5337	10884	3104	3159							-0.017581312281436112
FGQASVAF	8	Unmodified						0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	826.40938	825.402104	1.3895	0.0011483	8.3283	0.0068826	9.7178	0.0080309	826.4168827478978	33.913	0.096497	33.911	33.863	33.96	-0.0012474	486	40	1.3303722	0.023299098	1.3288528	270.88333		4.7440186	0.010822	0.00048052	0.0001364	NaN	5.4659	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4107.9	+		5338	10884	3104	3159							-0.017581312281436112
FGSSIQDV	8	Unmodified	_FGSSIQDV_					0	0	0			REV__ENST00000471359.1_1_20:25274602-25277155:+|nuORF	REV__ENST00000471359.1_1_20:25274602-25277155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4097740525	1	852.409774	851.402498	2.9321	0.0024994	-2.7644	-0.0023564	0.16769	0.00014294	852.4048822669675	31.017	0.048262	31.012	31.012	31.06	-0.0050716	450	34	1.3518641	0.019687414	1.3503447	275.12177	0	4.0066223						26	3	2	NaN	NaN	NaN	0.82212	1	5270	5270		6.2502	1.3405	1	1215.7	+		5339	8840	3105	3160	4219	4219					-0.029147562989578546
FGSSSGAA	8	Unmodified	_FGSSSGAA_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1533858941	2	342.153386	682.292219	1.2428	0.00042522	4.5082	0.0015425	5.751	0.0019677	342.1549296027907	32.61	0.12069	32.607	32.51	32.631	-0.0031052	1509	70	0.70793515	0.04274839	0.7064157	289.27176	0	17.46756						157	6	2	NaN	NaN	NaN	0.84727	1	2792	2792		1.2418	0.84618	1	22336	+		5340	8800	3106	3161	4220	4220					-0.06163556567332762
FGSVELLQA	9	Unmodified	_FGSVELLQA_					0	0	0			REV__ENST00000517527.1_1_5:171532629-171533799:-|nuORF	REV__ENST00000517527.1_1_5:171532629-171533799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.26092497080003	2	482.260925	962.507297	2.1796	0.0010511	-5.8885	-0.0028398	-3.7089	-0.0017886	482.25833600257954	13.901	0.11985	13.89	13.842	13.962	-0.010672	1341	40	0.8117308	0.024023652	0.81021136	329.78384	0	9.760162						78	6	2	NaN	NaN	NaN	0.67082	1	7251	7251		1.7022	0	1	6629.7	+		5341	12578	3107	3162	4221	4221					0.024543651776298248
FGSVPPLYQL	10	Unmodified	_FGSVPPLYQL_					0	0	0		CYP2C18|p.R478S|1|0.2|ENSG00000108242|chr10:94735403-94735403|C/A|missense_variant	CYP2C18|p.R478S|1|0.2|ENSG00000108242|chr10:94735403-94735403|C/A|missense_variant	CYP2C18|p.R478S|1|0.2|ENSG00000108242|chr10:94735403-94735403|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.80549964995	2	560.8055	1119.59645	1.1917	0.0006683	-6.1256	-0.0034353	-4.934	-0.002767	560.8038234162304	21.079	0.072231	21.065	21.041	21.114	-0.014004	1230	40	0.8799654	0.023922563	0.878446	356.79837	0	9.699829						97	4	3	NaN	NaN	NaN	0.72631	1	13260	13260		6.2502	0.15988	1	10029			5342	242	3108	3163	4222	4222					0.04143200137127678
FGTDAVIYL	9	Unmodified	_FGTDAVIYL_					0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5193245018999	1	998.519325	997.512048	1.4374	0.0014352	0.80686	0.00080566	2.2442	0.0022409	998.5202817536231	30.68	0.096531	30.68	30.656	30.753	0	201	52	1.4997677	0.030161738	1.4997677	304.51068	0	6.123993						86	5	2	NaN	NaN	NaN	0.056143	1	8479	8479		44.302	9.8636	1	7122.3			5343	334	3109	3164	4223	4223					0.013192493203632694
FGTDAVIYL	9	Unmodified						0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.519325	997.512048	1.5146	0.0015124	-0.060007	-5.9918E-05	1.4546	0.0014525	998.5188864884211	30.679	0.096527	30.673	30.649	30.746	-0.0057545	204	43	1.4979934	0.02483511	1.496474	304.15042		5.0424805	-0.0033941	-0.0004878	-0.0016468	NaN	44.302	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7066.6			5344	334	3109	3164							0.013192493203632694
FGTEVEPEF	9	Unmodified	_FGTEVEPEF_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.4727682398	1	1054.47277	1053.46549	2.4046	0.0025356	0.98206	0.0010356	3.3867	0.0035711	1054.474815910894	25.467	0.12064	25.467	25.419	25.539	0	213	52	1.4926696	0.030180931	1.4926696	302.84998	0	6.1234436						107	6	2	NaN	NaN	NaN	0.14301	1	10776	10776		29.598	18.05	1	8785.1			5345	1610	3110	3165	4224	4224					-0.05910235301553257
FGTEVEPEF	9	Unmodified						0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1054.47277	1053.46549	2.2698	0.0023934	-0.90066	-0.00094972	1.3691	0.0014437	1054.4722342512264	25.467	0.12066	25.455	25.431	25.551	-0.012011	219	52	1.4891195	0.030177712	1.4876001	302.1297		6.1228027	-0.0061528	-0.00068617	-0.0025348	NaN	29.598	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7561			5346	1610	3110	3165							-0.05910235301553257
FGTFQQFGSS	10	Unmodified	_FGTFQQFGSS_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2510885660001	2	553.251089	1104.48762	1.0867	0.00060122	5.4175	0.0029972	6.5042	0.0035985	553.2551207919701	34.13	0.1931	34.129	34.08	34.274	-0.0012474	1266	112	0.85786515	0.068116724	0.8563457	347.89523	0	27.62378						343	8	3	NaN	NaN	NaN	0.66626	1	12678	12678		10.36	2.0826	1	65543			5347	2024	3111	3166	4225	4225					-0.060440108331249576
FGTFSSGNKQ	10	Unmodified	_FGTFSSGNKQ_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5057997027	1	1072.5058	1071.49852	1.3978	0.0014992	3.0235	0.0032427	4.4213	0.0047419	1072.5096883039632	30.704	0.19306	30.704	30.656	30.849	0	153	121	1.5281296	0.07078469	1.5281296	309.97702	0	14.35849						673	9	4	NaN	NaN	NaN	0.28195	1	11621	11621		28.495	8.0466	1	88781	+		5348	13186	3112	3167	4226	4226					-0.03436608458855517
FGTTKGGG	8	Unmodified	_FGTTKGGG_					0	0	0			REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF;REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3624299294002	1	724.36243	723.355153	1.151	0.00083376	6.7055	0.0048572	7.8566	0.005691	724.3673018890632	29.136	0.072393	29.136	29.112	29.184	0	654	67	1.2297117	0.03965938	1.2297117	250.96495	0	8.093857						101	4	2	NaN	NaN	NaN	0.77489	1	3663	3663		12.588	1.4972	1	13273	+		5349	12295;13125	3113	3168	4227	4227					-0.017589907792739723
FGTTKGGG	8	Unmodified	_FGTTKGGG_					0	0	0			REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF;REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3624299294002	1	724.36243	723.355153	1.0519	0.00076193	7.5141	0.0054429	8.566	0.0062049	724.3678795261084	29.159	0.19311	29.151	29.055	29.248	-0.0077209	654	115	1.2297117	0.06847334	1.2281922	250.96495	0	13.974335						269	9	3	NaN	NaN	NaN	0.75561	1	3582	3582		15.175	6.8851	1	23084	+		5350	12295;13125	3113	3168	4228	4228					-0.017589907792739723
FGTTKGGG	8	Unmodified						0	0	0			REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF;REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.36243	723.355153	1.151	0.00083376	6.7055	0.0048572	7.8566	0.005691	724.3673018890632	29.136	0.072393	29.136	29.112	29.184	0	654	67	1.2297117	0.03965938	1.2297117	250.96495		8.093857	-0.0078081	-0.00026045	0.00075972	NaN	15.175	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13273	+		5351	12295;13125	3113	3168							-0.017589907792739723
FGTTKGGG	8	Unmodified						0	0	0			REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF;REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	724.36243	723.355153	1.0519	0.00076193	7.5141	0.0054429	8.566	0.0062049	724.3678795261084	29.159	0.19311	29.151	29.055	29.248	-0.0077209	654	115	1.2297117	0.06847334	1.2281922	250.96495		13.974335	0.0078081	0.00032523	-0.00075972	NaN	15.175	269	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23084	+		5352	12295;13125	3113	3168							-0.017589907792739723
FGVFENQL	8	Unmodified	_FGVFENQL_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4727086603001	1	953.472709	952.465432	1.3728	0.0013089	5.3899	0.0051392	6.7627	0.0064481	953.4784770770007	34.926	0.14473	34.926	34.901	35.046	-4.5776E-05	321	52	1.4286518	0.030290127	1.4271324	290.25833	0	6.154022						167	7	3	NaN	NaN	NaN	0.67593	1	7008	7008		20.555	1.4371	1	11923	+		5353	11998	3114	3169	4229	4229					-0.01270190510899738
FGVGAGVQA	9	Unmodified	_FGVGAGVQA_					0	0	0		ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4202791593	1	805.420279	804.413003	1.3506	0.0010878	5.55	0.0044701	6.9007	0.0055579	805.4245628221175	26.915	0.21723	26.904	26.856	27.073	-0.010645	546	106	1.294491	0.0628221	1.2929716	263.69	0	12.796997						305	10	3	NaN	NaN	NaN	0.3389	1	4704	4704		16.417	1.2413	1	36511			5354	6347	3115	3170	4230	4230					0.0029727114613251615
FGWSFVRKQ	9	Unmodified	_FGWSFVRKQ_					0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8089080061501	2	577.808908	1153.60326	1.8394	0.0010628	-9.9883	-0.0057713	-8.1489	-0.0047085	577.8030870809831	17.378	0.09598	17.364	17.34	17.436	-0.013569	1197	34	0.9001988	0.02022028	0.8986794	364.87152	0	8.19574						71	5	2	NaN	NaN	NaN	0.39244	1	14444	14444		14.042	6.5012	1	7797.6	+		5355	10799	3116	3171	4231	4231					0.032605578083803266
FHAQAEALI	9	Unmodified	_FHAQAEALI_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-4|FLAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5258068633001	1	999.525807	998.51853	1.0338	0.0010333	-10.285	-0.01028	-9.2515	-0.0092471	999.5152453495125	39.815	0.12056	39.815	39.694	39.815	0	237	55	1.4784646	0.03197491	1.4784646	300.18124	0	6.4920654						166	6	3	NaN	NaN	NaN	0.18779	1	8523	8523		26.115	2.7805	1	14774	+		5356	10208	3117	3172	4232	4232					0.01921187271761937
FHELSIDNY	9	Unmodified	_FHELSIDNY_					0	0	0		tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.26419594125	2	569.264196	1136.51384	1.8682	0.0010635	5.4384	0.0030959	7.3066	0.0041594	569.7676737159817	23.827	0.19272	23.827	23.73	23.923	0	1236	82	0.876284	0.04972291	0.876284	355.2413	0	20.15741						349	9	4	NaN	NaN	NaN	0.29681	1	14328	14328		19.118	2.5342	1	46782			5357	13731	3118	3173	4233	4233					-0.048957416616758564
FHFLHQNF	8	Unmodified	_FHFLHQNF_					0	0	0		tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2668760159501	2	545.266876	1088.5192	1.0496	0.00057229	5.1687	0.0028183	6.2183	0.0033906	545.2697552144997	34.13	0.16895	34.129	34.105	34.274	-0.0012474	1260	61	0.8615505	0.036833763	0.8600311	349.45294	0	14.9401245						190	8	3	NaN	NaN	NaN	0.80692	1	12011	12011		8.2903	0	1	22249			5358	13789	3119	3174	4234	4234					-0.021519732885280973
FHFLHQNF	8	Unmodified						0	0	0		tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.266876	1088.5192	0.98602	0.00053764	4.0582	0.0022128	5.0443	0.0027505	545.2688013205192	34.155	0.12057	34.155	34.107	34.228	0	1260	61	0.8615505	0.036833763	0.8615505	349.45294		14.940094	0.013298	-0.00064777	0.00075972	NaN	8.2903	186	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21539			5359	13789	3119	3174							-0.021519732885280973
FHGALHLW	8	Unmodified	_FHGALHLW_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.75868684310007	2	490.758687	979.502821	1.5939	0.00078224	-6.0874	-0.0029874	-4.4935	-0.0022052	490.7553244409536	18.002	0.12	17.988	17.94	18.06	-0.013786	1347	76	0.8080346	0.046179354	0.8065152	328.20197	0	18.756805						172	6	2	NaN	NaN	NaN	0.77734	1	7701	7701		12.26	2.2081	1	14732			5360	2893	3120	3175	4235	4235					0.012249455453797964
FHGDYNYDF	9	Unmodified	_FHGDYNYDF_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.23289581285	2	589.232896	1176.45124	1.0497	0.00061853	-6.6081	-0.0038937	-5.5584	-0.0032752	589.2293318024505	34.926	0.12059	34.926	34.877	34.998	-4.5776E-05	1218	43	0.8873258	0.025755763	0.8858064	359.57123	0	10.437012						154	6	3	NaN	NaN	NaN	0.60736	1	15111	15111		5.1889	0.45981	1	13739	+		5361	10088	3121	3176	4236	4236					-0.12992887729865288
FHHPYFLL	8	Unmodified	_FHHPYFLL_					0	0	0		SOX30|p.P619L|1|0.33|ENSG00000039600|chr5:157638254-157638254|G/A|missense_variant	SOX30|p.P619L|1|0.33|ENSG00000039600|chr5:157638254-157638254|G/A|missense_variant	SOX30|p.P619L|1|0.33|ENSG00000039600|chr5:157638254-157638254|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2819947639001	2	537.281995	1072.54944	1.8424	0.0009899	7.5493	0.0040561	9.3917	0.005046	537.7876187322927	34.614	0.12061	34.614	34.541	34.662	0	1305	28	0.83389086	0.016608357	0.83389086	338.29684	0	6.7377625						82	6	2	NaN	NaN	NaN	0.71635	1	11673	11673		18.034	0.23551	1	7492.6			5362	13680	3122	3177	4237	4237					0.016063853766581815
FHISRLFYF	9	Unmodified	_FHISRLFYF_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.55371454473334	3	410.553715	1228.63931	1.5738	0.00064612	-1.0051	-0.00041264	0.56869	0.00023348	410.55328821022096	27.977	0.21718	27.977	27.905	28.122	0	1479	43	0.72651637	0.025999546	0.72651637	441.38806	0	15.795776						289	10	4	NaN	NaN	NaN	0.33629	1	17219	17219		14.854	5.9124	1	36741			5363	713	3123	3178	4238	4238					0.034140149852191826
FHLPSSKRGAM	11	Unmodified	_FHLPSSKRGAM_					0	0	0			REV__nc|ENSG00000173273|O95271-2|TNKS	REV__nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.8242321068501	2	615.824232	1229.63391	0.60534	0.00037278	2.9169	0.0017963	3.5223	0.0021691	615.8262441820369	29.352	0.12064	29.344	29.296	29.417	-0.0077209	1146	46	0.93142134	0.027525544	0.9299019	377.2508	0	11.14859						129	6	2	NaN	NaN	NaN	0.63477	1	16542	16542		11.739	1.3787	1	25618	+		5364	10673	3124	3179	4239	4239					0.028279681311005334
FHPADRGPQE	10	Unmodified	_FHPADRGPQE_					0	0	0			REV__SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|51|1|anti-sense	REV__SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|51|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.2728866406001	2	577.272887	1152.53122	1.8942	0.0010935	1.7511	0.0010108	3.6453	0.0021043	577.2753269044134	16.158	0.35989	16.158	16.062	16.422	0	1227	67	0.88180584	0.040490866	0.88180584	357.4203	0	16.412048						269	16	2	NaN	NaN	NaN	0.61382	1	14882	14882		13.949	0.94593	1	49685	+		5365	13345	3125	3180	4240	4240					-0.0389440133599237
FHRGEYSA	8	Unmodified	_FHRGEYSA_					0	0	0		nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4428055154001	1	966.442806	965.435529	1.7927	0.0017326	-2.1448	-0.0020728	-0.35209	-0.00034027	966.4419540578524	21.561	0.072298	21.561	21.513	21.585	0	327	40	1.425088	0.02316308	1.425088	289.47885	0	4.7051086						57	4	2	NaN	NaN	NaN	0.84455	1	7489	7489		2.7852	0.32367	1	3824.5			5366	5919	3126	3181	4241	4241					-0.048571294562407274
FHRQLLYL	8	Unmodified	_FHRQLLYL_					0	0	0		nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.31382620855	2	545.313826	1088.6131	1.1093	0.00060492	3.1883	0.0017386	4.2976	0.0023435	545.3153552489262	30.897	0.26545	30.897	30.801	31.066	0	1167	157	0.91857195	0.095365405	0.91857195	372.58096	0	38.68106						775	12	3	NaN	NaN	NaN	0.84692	1	12348	12348		1.4396	0.5137	1	146930			5367	8070	3127	3182	4242	4242					0.0723374581373264
FHRQLLYL	8	Unmodified						0	0	0		nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.313826	1088.6131	1.4543	0.00079308	3.2059	0.0017482	4.6602	0.0025413	545.3155140181067	30.872	0.28968	30.866	30.818	31.108	-0.0057545	1155	190	0.92591566	0.11548293	0.9243962	375.55963		46.84091	-0.015484	6.4874E-06	0.0029121	NaN	1.4396	907	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169670			5368	8070	3127	3182							0.0723374581373264
FHRVYSFLDYI	11	Unmodified	_FHRVYSFLDYI_					0	0	0		nc|ENSG00000178773|Q9UBL6|CPNE7;ENSG00000178773|ENST00000319518|CPNE7;ENST00000532500.1_1_16:89651241-89653999:+|nuORF	nc|ENSG00000178773|Q9UBL6|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.3720693689502	2	730.372069	1458.72959	1.614	0.0011788	5.013	0.0036613	6.627	0.0048402	730.3760852800267	22.26	0.1447	22.26	22.212	22.356	0	1005	64	1.0174452	0.03834933	1.0174452	411.3735	0	15.505402						239	7	5	NaN	NaN	NaN	0.50669	1	20422	20422		18.233	0.2638	1	47704			5369	5127	3128	3183	4243	4243					0.018570195230040554
FHRWCLWP	8	Unmodified	_FHRWCLWP_					0	0	0			REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF	REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7790963217001	2	572.779096	1143.54364	2.0586	0.0011791	4.358	0.0024962	6.4167	0.0036753	572.7820549767563	23.296	0.1206	23.296	23.224	23.345	0	1200	91	0.89836043	0.05519098	0.89836043	364.16412	0	22.372498						242	6	4	NaN	NaN	NaN	0.79379	1	14578	14578		10.052	1.0896	1	47850	+		5370	11574	3129	3184	4244	4244					-0.02239036406649575
FHSPEKPGAFL	11	Unmodified	_FHSPEKPGAFL_					0	0	0		nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285937|A6NJQ4|FAM90A8;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1	nc|ENSG00000285975|A6NKC0|FAM90A7	nc|ENSG00000285975|A6NKC0|FAM90A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3193055169501	2	615.319306	1228.62406	1.1282	0.00069419	8.0351	0.0049442	9.1633	0.0056384	615.3239208323695	28.001	0.048241	28.001	27.977	28.026	0	1137	52	0.9369253	0.031172097	0.9369253	379.48346	0	12.625641						71	3	2	NaN	NaN	NaN	0.57257	1	17216	17216		15.822	1.3969	1	15583			5371	4810	3130	3185	4245	4245					0.018891033973659432
FHSVCASN	8	Unmodified	_FHSVCASN_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.68706992345	2	432.68707	863.359587	0.9553	0.00041335	2.9209	0.0012638	3.8762	0.0016772	432.6883829225013	26.94	0.12062	26.94	26.915	27.036	0	1311	76	0.83019954	0.0461244	0.83019954	337.83203	0	18.769348						128	6	2	NaN	NaN	NaN	0.82797	1	5572	5572		5.4659	0.55612	1	11969			5372	4398	3131	3186	4246	4246					-0.07755849628028955
FHTLMVFRTM	10	Unmodified	_FHTLMVFRTM_					0	0	0			REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8253861998	2	641.825386	1281.63622	2.0527	0.0013175	-8.6838	-0.0055735	-6.6311	-0.004256	641.8199788088015	17.261	0.095835	17.261	17.237	17.333	0	1137	37	0.9369253	0.022012115	0.9369253	379.30908	0	8.911499						122	5	3	NaN	NaN	NaN	0.71559	1	18450	18450		6.9844	0.12115	1	8599.9	+		5373	11889	3132	3187	4247	4247					0.006666805445547652
FHTLMVFRTM	10	Unmodified						0	0	0			REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	REV__ENST00000370713.5_1_1:82372818-82372908:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	641.825386	1281.63622	2.0527	0.0013175	-8.6838	-0.0055735	-6.6311	-0.004256	641.8199788088015	17.261	0.095835	17.261	17.237	17.333	0	1137	37	0.9369253	0.022012115	0.9369253	379.30908		8.911499	-0.087438	0.00030832	0.00075972	NaN	6.9844	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8599.9	+		5374	11889	3132	3187							0.006666805445547652
FHVMREKHP	9	Unmodified	_FHVMREKHP_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1180.6044083103002	1	1180.60441	1179.59713	3.0902	0.0036483	-11.646	-0.013749	-8.556	-0.010101	1180.5897599862365	26.143	0.096548	26.143	26.094	26.191	0	66	52	1.579413	0.03001821	1.579413	320.00626	0	6.0820007						96	5	2	NaN	NaN	NaN	0.33629	1	15812	15812		16.584	0.76223	1	9740.1			5375	628	3133	3188	4248	4248					0.014517163052232718
FHWKRAIQF	9	Unmodified	_FHWKRAIQF_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|27|2|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|27|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8379997966	2	616.838	1231.66145	0.90903	0.00056072	-1.5443	-0.00095259	-0.63529	-0.00039187	616.8369509972638	21.224	0.096304	21.224	21.224	21.32	0	1125	40	0.9442611	0.023834884	0.9442611	382.44424	0	9.653595						96	5	3	NaN	NaN	NaN	0.47587	1	17321	17321		10.605	2.3601	1	10163	+		5376	13013	3134	3189	4249	4249					0.05488239453643473
FHWKRAIQF	9	Unmodified						0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|27|2|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|27|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.838	1231.66145	0.90903	0.00056072	-1.5443	-0.00095259	-0.63529	-0.00039187	616.8369509972638	21.224	0.096304	21.224	21.224	21.32	0	1125	40	0.9442611	0.023834884	0.9442611	382.44424		9.653595	-0.0051406	0.0041696	0.00075972	NaN	10.605	96	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10163	+		5377	13013	3134	3189							0.05488239453643473
FIADVEPIF	9	Unmodified	_FIADVEPIF_					0	0	0		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5506246302998	1	1050.55062	1049.54335	2.151	0.0022598	-0.5277	-0.00055437	1.6233	0.0017054	1050.550027490216	32.563	0.21718	32.563	32.514	32.732	0	219	145	1.4891195	0.08515811	1.4891195	302.1443	0	17.278687						435	10	2	NaN	NaN	NaN	3.3858E-07	1	10617	10617		128.99	50.593	1	129720			5378	2606	3135	3190	4250	4250					0.020558223544639986
FIADVEPIF	9	Unmodified	_FIADVEPIF_					0	0	0		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5506246302998	1	1050.55062	1049.54335	1.3794	0.0014491	-0.61722	-0.00064842	0.76213	0.00080066	1050.5499305079184	32.562	0.19307	32.558	32.462	32.655	-0.0031052	216	127	1.4908947	0.07447374	1.4893752	302.5045	0	15.11084						624	9	4	NaN	NaN	NaN	0.0023856	1	10395	10395		109.86	41.749	1	135530			5379	2606	3135	3190	4251	4251					0.020558223544639986
FIAFTIMLC	9	Unmodified	_FIAFTIMLC_					0	0	0			REV__nc|ENSG00000135404|P08962-2|CD63	REV__nc|ENSG00000135404|P08962-2|CD63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7742993695001	2	529.774299	1057.53405	0.96079	0.000509	-6.4108	-0.0033963	-5.45	-0.0028873	529.7710552869501	24.623	0.16883	24.61	24.538	24.707	-0.012394	1230	85	0.8799654	0.051567256	0.878446	357.05292	0	20.923828						374	8	5	NaN	NaN	NaN	0.42773	1	10761	10761		12.588	0.84902	1	72473	+		5380	9615	3136	3191	4252	4252					0.007580144729445237
FIAFTIMLC	9	Unmodified						0	0	0			REV__nc|ENSG00000135404|P08962-2|CD63	REV__nc|ENSG00000135404|P08962-2|CD63	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.774299	1057.53405	0.96079	0.000509	-6.4108	-0.0033963	-5.45	-0.0028873	529.7710552869501	24.623	0.16883	24.61	24.538	24.707	-0.012394	1230	85	0.8799654	0.051567256	0.878446	357.05292		20.923828	0.0058203	0.0017308	-0.00075972	NaN	12.588	374	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72473	+		5381	9615	3136	3191							0.007580144729445237
FIAPVTLKV	9	Unmodified	_FIAPVTLKV_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;PLOD2|p.L649_N650insYL|1|0.13|ENSG00000152952|chr3:146071155-146071156|-/GTACAA|inframe_insertion	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.6237299939002	1	987.62373	986.616454	1.457	0.001439	8.1241	0.0080235	9.5811	0.0094625	987.6315886033059	39.692	0.19294	39.697	39.673	39.866	0.0053368	204	64	1.4979934	0.037266493	1.496474	304.19617	0	7.567688						187	9	2	NaN	NaN	NaN	0.29422	1	7949	7949		19.285	4.2718	1	16519			5382	3795	3137	3192	4253	4253					0.12260995867757174
FIASTGSS	8	Unmodified	_FIASTGSS_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3726602647002	1	769.37266	768.365384	2.3261	0.0017896	2.5327	0.0019486	4.8587	0.0037382	769.373651762439	29.714	0.048285	29.707	29.707	29.755	-0.0070648	558	40	1.2873057	0.023361325	1.2857863	262.4327	0	4.7624817						40	3	2	NaN	NaN	NaN	0.81807	1	4259	4259		6.794	0	1	2420.1	+		5383	12260	3138	3193	4254	4254					-0.028064278446890967
FIASTGSS	8	Unmodified						0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.37266	768.365384	1.9177	0.0014754	4.147	0.0031906	6.0647	0.004666	769.374962463917	29.932	0.12067	29.932	29.932	30.053	0	531	52	1.3034686	0.030516744	1.3034686	265.72772		6.221222	0.11256	0.00052953	0.0088412	NaN	6.794	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5764.4	+		5384	12260	3138	3193							-0.028064278446890967
FIASTGSS	8	Unmodified						0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	769.37266	768.365384	2.3261	0.0017896	2.5327	0.0019486	4.8587	0.0037382	769.373651762439	29.714	0.048285	29.707	29.707	29.755	-0.0070648	558	40	1.2873057	0.023361325	1.2857863	262.4327		4.7624817	-0.11256	-0.0007125	-0.0088412	NaN	6.794	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2420.1	+		5385	12260	3138	3193							-0.028064278446890967
FICNPTTF	8	Unmodified	_FICNPTTF_					0	0	0		ENST00000330198.8_2_3:197765919-197766228:+|nuORF	ENST00000330198.8_2_3:197765919-197766228:+|nuORF	ENST00000330198.8_2_3:197765919-197766228:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4389656909	1	942.438966	941.431689	1.2959	0.0012213	-3.392	-0.0031967	-2.096	-0.0019754	942.4354511623771	36.205	0.16877	36.205	36.157	36.326	0	333	55	1.4215236	0.03208387	1.4215236	288.85837	0	6.5195312						228	8	3	NaN	NaN	NaN	0.54545	1	6838	6838		28.667	1.935	1	22512			5386	6502	3139	3194	4255	4255					-0.0413693527432315
FICQQNGLA	9	Unmodified	_FICQQNGLA_					0	0	0			REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4822274891001	1	993.482227	992.474951	2.3841	0.0023686	3.9246	0.003899	6.3087	0.0062676	993.4860911093031	23.055	0.096409	23.055	23.055	23.152	0	261	76	1.4642475	0.044463873	1.4642475	297.31924	0	9.028534						97	5	2	NaN	NaN	NaN	0.20577	1	8307	8307		24.961	4.4056	1	13350	+		5387	8210	3140	3195	4256	4256					-0.02158745497035852
FIDAGGSG	8	Unmodified	_FIDAGGSG_					0	0	0		ENST00000220772.7_1_8:41119766-41119874:-|nuORF	ENST00000220772.7_1_8:41119766-41119874:-|nuORF	ENST00000220772.7_1_8:41119766-41119874:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3307954500002	1	723.330795	722.323519	1.5252	0.0011032	6.6567	0.004815	8.1819	0.0059182	723.3362323661551	28.17	0.096525	28.17	28.17	28.267	0	618	76	1.2513325	0.04502654	1.2513325	255.38422	0	9.189453						102	5	2	NaN	NaN	NaN	0.77489	1	3638	3638		12.588	0	1	8977.6			5388	6236	3141	3196	4257	4257					-0.04874983533215982
FIDDMEDVL	9	Unmodified	_FIDDMEDVL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1096.4867037445	1	1096.4867	1095.47943	1.863	0.0020427	2.1357	0.0023418	3.9987	0.0043845	1096.4868916628377	30.439	0.21719	30.439	30.318	30.535	0	117	82	1.5493695	0.047761917	1.5493695	314.198	0	9.685669						493	10	4	NaN	NaN	NaN	0.023074	1	12632	12632		68.108	35.656	1	66622			5389	3358	3142	3197	4258	4258					-0.0644932586478717
FIDDMEDVL	9	Unmodified	_FIDDMEDVL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.4867037445	1	1096.4867	1095.47943	1.4587	0.0015994	2.0743	0.0022744	3.533	0.0038739	1097.4926630952093	30.414	0.28953	30.407	30.287	30.576	-0.0064106	114	106	1.5511382	0.06191361	1.5496187	314.5567	0	12.555542						581	13	3	NaN	NaN	NaN	0.025843	1	12307	12307		64.55	35.654	1	74596			5390	3358	3142	3197	4259	4259					-0.0644932586478717
FIDDMEDVL	9	Oxidation (M)	_FIDDM(Oxidation (M))EDVL_		FIDDM(1)EDVL		FIDDM(65)EDVL	0	0	1		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4816183665998	1	1112.48162	1111.47434	2.3706	0.0026373	-0.36743	-0.00040876	2.0032	0.0022285	1112.4822698083954	25.998	0.12067	25.998	25.95	26.07	0	105	76	1.5564433	0.04420054	1.5564433	315.57602	0	8.961853						263	6	4	NaN	NaN	NaN	0.025843	1	13326	13326		64.55	41.216	1	26826			5391	3358	3142	3198	4260	4260		374			-0.07693629727418738
FIDDMEDVL	9	Oxidation (M)	_FIDDM(Oxidation (M))EDVL_		FIDDM(1)EDVL		FIDDM(44)EDVL	0	0	1		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.4816183665998	1	1112.48162	1111.47434	1.9665	0.0021876	0.80721	0.00089801	2.7737	0.0030857	1112.4829816776391	25.998	0.12068	25.987	25.938	26.059	-0.011137	108	76	1.5546752	0.04419589	1.5531558	315.2175	0	8.960907						220	6	3	NaN	NaN	NaN	0.056143	1	12950	12950		44.302	19.341	1	25344			5392	3358	3142	3198	4261	4261		374			-0.07693629727418738
FIDRDGEIF	9	Unmodified	_FIDRDGEIF_					0	0	0		nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2745636623	2	556.274564	1110.53457	0.92004	0.0005118	4.8322	0.002688	5.7522	0.0031998	556.277389165132	37.145	0.14472	37.145	37.048	37.193	0	1218	76	0.8873258	0.046019793	0.8873258	359.81842	0	18.661438						218	7	2	NaN	NaN	NaN	0.35794	1	13300	13300		15.463	3.414	1	28738			5393	3819	3143	3199	4262	4262					-0.016271512820139833
FIDSDEALA	9	Unmodified	_FIDSDEALA_					0	0	0			REV__nc|ENSG00000158560|O14576-4|DYNC1I1	REV__nc|ENSG00000158560|O14576-4|DYNC1I1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4571181756	1	980.457118	979.449842	1.3243	0.0012984	8.055	0.0078976	9.3793	0.009196	980.4646861779124	32.682	0.24128	32.679	32.534	32.776	-0.0031052	237	94	1.4784646	0.055094242	1.4769452	300.26074	0	11.189056						310	11	2	NaN	NaN	NaN	0.12945	1	7692	7692		31.561	0.76994	1	31870	+		5394	10168	3144	3200	4263	4263					-0.04070521818607631
FIDSDEALA	9	Unmodified						0	0	0			REV__nc|ENSG00000158560|O14576-4|DYNC1I1	REV__nc|ENSG00000158560|O14576-4|DYNC1I1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	980.457118	979.449842	1.5662	0.0015356	8.8872	0.0087135	10.453	0.010249	980.4666735593374	32.659	0.16895	32.659	32.587	32.756	0	231	91	1.4820169	0.05331421	1.4820169	300.9822		10.827545	-0.0099639	0.00044862	0.0025359	NaN	31.561	301	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30991	+		5395	10168	3144	3200							-0.04070521818607631
FIDSDEALA	9	Unmodified						0	0	0			REV__nc|ENSG00000158560|O14576-4|DYNC1I1	REV__nc|ENSG00000158560|O14576-4|DYNC1I1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	980.457118	979.449842	1.3243	0.0012984	8.055	0.0078976	9.3793	0.009196	980.4646861779124	32.682	0.24128	32.679	32.534	32.776	-0.0031052	237	94	1.4784646	0.055094242	1.4769452	300.26074		11.189056	0.0099639	-0.00036734	-0.0025359	NaN	31.561	310	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31870	+		5396	10168	3144	3200							-0.04070521818607631
FIDSGVMSAI	10	Unmodified	_FIDSGVMSAI_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2600676910502	2	520.260068	1038.50558	1.5093	0.00078523	-1.5159	-0.00078868	-0.0066399	-3.4544E-06	520.7599568265682	21.272	0.09621	21.258	21.234	21.33	-0.014004	1278	55	0.85049206	0.033189833	0.8489726	345.1751	0	13.470215						98	5	3	NaN	NaN	NaN	0.69717	1	9927	9927		8.2448	0.70444	1	6901.1			5397	4208	3145	3201	4264	4264					-0.012130119026323882
FIDTSQFIL	9	Unmodified	_FIDTSQFIL_					0	0	0		ENST00000419283.1_1_2:162933923-162934139:-|nuORF;ENSG00000126953|ENST00000372902|TIMM8A	ENST00000419283.1_1_2:162933923-162934139:-|nuORF	ENST00000419283.1_1_2:162933923-162934139:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5720883539	1	1083.57209	1082.56481	1.3637	0.0014777	-4.0688	-0.0044088	-2.7051	-0.0029311	1083.5709132780553	32.537	0.048294	32.534	32.51	32.558	-0.0031052	87	55	1.5670487	0.031799078	1.5655292	317.83038	0	6.4495544						72	3	2	NaN	NaN	NaN	0.29681	1	11789	11789		19.118	2.7017	1	6110.3			5398	2523	3146	3202	4265	4265					0.026832073831883463
FIEELSSLF	9	Unmodified	_FIEELSSLF_					0	0	0		ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.5561039387	1	1084.5561	1083.54883	0.9587	0.0010398	0.56279	0.00061038	1.5215	0.0016501	1085.5600460222413	32.465	0.1689	32.462	32.438	32.607	-0.0031052	75	82	1.5741152	0.04770124	1.5725957	319.25995	0	9.674683						221	8	2	NaN	NaN	NaN	0.078597	1	11814	11814		38.918	7.3568	1	27700			5399	3150	3147	3203	4266	4266					0.010395011463060655
FIEENDEVL	9	Unmodified	_FIEENDEVL_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.5204467139	1	1107.52045	1106.51317	1.5695	0.0017383	-1.8181	-0.0020135	-0.24853	-0.00027525	1108.5200691538237	24.598	0.16877	24.598	24.502	24.671	0	126	64	1.544062	0.037155986	1.544062	313.08286	0	7.533966						254	8	3	NaN	NaN	NaN	0.012861	1	13122	13122		84.233	20.274	1	30342			5400	5473	3148	3204	4267	4267					-0.03582581101386495
FIEQVAEF	8	Unmodified	_FIEQVAEF_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4880243735	1	982.488024	981.480748	1.5256	0.0014989	0.76839	0.00075493	2.294	0.0022538	982.4895378085138	26.939	0.072424	26.928	26.904	26.976	-0.010645	282	49	1.4517976	0.028464437	1.4502782	294.83652	0	5.78067						104	4	2	NaN	NaN	NaN	0.76406	1	7761	7761		14.042	0	1	11183			5401	4157	3149	3205	4268	4268					-0.010733237137174001
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.88887431419994	3	405.888874	1214.64479	1.4173	0.00057525	-3.7206	-0.0015101	-2.3033	-0.0009349	405.8872080389814	22.597	0.193	22.597	22.549	22.742	0	1428	37	0.7580582	0.022246659	0.7580582	460.60986	0	13.517517						167	9	3	NaN	NaN	NaN	0.23668	1	16849	16849		32.377	23.458	1	25047			5402	3845	3150	3206	4269	4269					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3296732379999	2	608.329673	1214.64479	1.3497	0.00082108	-2.1973	-0.0013367	-0.84756	-0.0005156	608.3276330543373	22.597	0.14476	22.597	22.549	22.694	0	1125	40	0.9442611	0.023834884	0.9442611	382.50363	0	9.65509						158	7	3	NaN	NaN	NaN	0.018338	1	16850	16850		69.363	44.801	1	19493			5403	3845	3150	3206	4270	4270					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.88887431419994	3	405.888874	1214.64479	1.1792	0.00047861	-0.64072	-0.00026006	0.53846	0.00021855	406.2228736699647	22.645	0.21705	22.631	22.559	22.776	-0.01354	1428	43	0.7580582	0.025951624	0.75653875	460.60983	0	15.768707						271	10	4	NaN	NaN	NaN	0.52161	1	16181	16181		18.558	7.6967	1	41279			5404	3845	3150	3206	4271	4271					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENST00000481145.1_1_1:89729385-89732242:-|nuORF;nc|ENSG00000154451|Q96PP8-2|GBP5;ENSG00000154451|ENST00000370459|GBP5	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENST00000481145.1_1_1:89729385-89732242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3296732379999	2	608.329673	1214.64479	0.86638	0.00052705	-0.02791	-1.6979E-05	0.83847	0.00051007	608.8310038777905	22.645	0.21711	22.631	22.535	22.752	-0.01354	1119	46	0.9479278	0.027498782	0.94640833	383.98895	0	11.139282						279	10	4	NaN	NaN	NaN	0.13615	1	16182	16182		36.235	22.193	1	30849			5405	3845	3150	3206	4272	4272					0.046056937770117656
FIFFYFIT	8	Unmodified	_FIFFYFIT_					0	0	0			REV__ENST00000522628.5_1_8:52232281-52232437:-|nuORF	REV__ENST00000522628.5_1_8:52232281-52232437:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.28895412875	2	549.288954	1096.56336	1.8226	0.0010011	-8.5423	-0.0046922	-6.7197	-0.0036911	549.2844787852885	23.441	0.096525	23.427	23.355	23.451	-0.013294	1236	73	0.876284	0.044186175	0.8747646	355.39645	0	17.920685						144	5	2	NaN	NaN	NaN	0.72043	1	12367	12367		17.78	5.7316	1	28981	+		5406	12605	3151	3207	4273	4273					0.01893618085068738
FIFIFHSWIL	10	Unmodified	_FIFIFHSWIL_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.8684342577502	2	661.868434	1321.72232	1.3405	0.00088725	-7.4455	-0.0049279	-6.105	-0.0040407	662.3650668883863	29.136	0.096537	29.136	29.112	29.208	0	1071	43	0.977233	0.025622725	0.977233	395.49948	0	10.369873						92	5	3	NaN	NaN	NaN	0.72631	1	19136	19136		6.2502	2.2817	1	7406.8			5407	8069	3152	3208	4274	4274					0.07432331713243912
FIFIFHSWIL	10	Unmodified						0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	661.868434	1321.72232	1.7376	0.0011501	-5.8488	-0.0038711	-4.1111	-0.002721	661.864253027813	29.231	0.0965	29.224	29.224	29.32	-0.0077209	1074	46	0.9754029	0.027457356	0.97388345	394.75882		11.112366	0.044029	0.0011777	-0.0016748	NaN	6.2502	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5627.6			5408	8069	3152	3208							0.07432331713243912
FIFMDPVENQ	10	Unmodified	_FIFMDPVENQ_					0	0	0		nc|ENSG00000203721|A6NCI5|LINC00862	nc|ENSG00000203721|A6NCI5|LINC00862	nc|ENSG00000203721|A6NCI5|LINC00862	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.28935644675	2	620.289356	1238.56416	0.8861	0.00054964	7.5853	0.0047051	8.4714	0.0052547	620.2942208859673	29.979	0.24131	29.973	29.925	30.166	-0.0064087	1122	73	0.9460945	0.044009984	0.9445751	383.16312	0	17.823822						587	11	5	NaN	NaN	NaN	0.64158	1	16754	16754		12.049	0.30984	1	187510			5409	8014	3153	3209	4275	4275					-0.04557955328164098
FIFRAGLNEY	10	Unmodified	_FIFRAGLNEY_					0	0	0			REV__tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	REV__tr|U7T4Z4|U7T4Z4_FUSNURiboflavinbiosynthesisproteinRibDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00613PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3193055169501	2	615.319306	1228.62406	0.99396	0.0006116	6.1471	0.0037825	7.1411	0.0043941	615.3229846654948	19.9	0.24072	19.885	19.789	20.03	-0.014141	1161	46	0.9222442	0.027543366	0.92072475	373.5372	0	11.155884						161	11	2	NaN	NaN	NaN	0.65442	1	16514	16514		11.17	0.20522	1	16185	+		5410	13609	3154	3210	4276	4276					0.018891033973659432
FIFTNFLV	8	Unmodified	_FIFTNFLV_					0	0	0			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7787535832	2	500.778754	999.542954	1.4571	0.00072966	-2.1107	-0.001057	-0.6537	-0.00032736	500.77652006998767	24.454	0.048262	24.441	24.441	24.489	-0.012749	1299	37	0.8375814	0.02214086	0.83606195	340.10858	0	8.99057						50	3	2	NaN	NaN	NaN	0.76406	1	8397	8397		14.042	1.4537	1	5474.9	+		5411	9682	3155	3211	4277	4277					0.043164474252762375
FIFVLDYL	8	Unmodified	_FIFVLDYL_					0	0	0		ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2864114398	2	515.286411	1028.55827	1.2653	0.00065201	-1.5395	-0.00079328	-0.27415	-0.00014127	515.7874549624429	21.729	0.24072	21.715	21.619	21.86	-0.013897	1275	76	0.85233563	0.046109498	0.8508162	345.9671	0	18.716064						368	11	4	NaN	NaN	NaN	0.59262	1	9527	9527		25.752	0	1	31712			5412	4541	3156	3212	4278	4278					0.045133142224585754
FIGDLVAL	8	Unmodified	_FIGDLVAL_					0	0	0			REV__ENST00000491112.1_1_1:185269520-185270317:-|nuORF	REV__ENST00000491112.1_1_1:185269520-185270317:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4923814699001	1	847.492381	846.485105	1.7539	0.0014864	-1.3717	-0.0011625	0.38224	0.00032395	847.4914395504802	34.517	0.12066	34.517	34.493	34.614	0	402	70	1.3804773	0.041103005	1.3804773	280.97086	0	8.365753						198	6	3	NaN	NaN	NaN	0.82332	1	5349	5349		6.0903	2.0366	1	24182	+		5413	9223	3157	3213	4279	4279					0.055721854998637355
FIGGTPQDCI	10	Unmodified	_FIGGTPQDCI_					0	0	0			REV__ENSG00000139797|ENST00000267291|RNF113B	REV__ENSG00000139797|ENST00000267291|RNF113B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7498671455	2	525.749867	1049.48518	1.2544	0.00065952	-4.6485	-0.002444	-3.3941	-0.0017844	525.7469966781803	29.498	0.14486	29.498	29.474	29.618	0	1332	37	0.8172735	0.02216494	0.8172735	331.64786	0	8.994476						92	7	2	NaN	NaN	NaN	0.58645	1	10600	10600		15.822	4.6516	1	6961.3	+		5414	9779	3158	3214	4280	4280					-0.037581825624556586
FIGLRREPDYE	11	Unmodified	_FIGLRREPDYE_					0	0	0			REV__nc|ENSG00000130826|O60832-2|DKC1	REV__nc|ENSG00000130826|O60832-2|DKC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.8567834455001	2	697.856783	1393.69901	1.7805	0.0012425	-10.237	-0.007144	-8.4565	-0.0059014	697.8492673476977	25.925	0.1448	25.914	25.89	26.034	-0.0116	1092	97	0.9644182	0.058559954	0.96289873	390.10455	0	23.687317						401	7	3	NaN	NaN	NaN	0.48069	1	19070	19070		19.164	2.3053	1	65991	+		5415	9498	3159	3215	4281	4281					0.017912411379484183
FIGTGLYLL	9	Unmodified	_FIGTGLYLL_					0	0	0			REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	REV__tr|U7T8R7|U7T8R7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00145PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5764454503	1	996.576445	995.569169	1.1317	0.0011278	-0.016975	-1.6917E-05	1.1147	0.0011109	996.5762137635135	33.89	0.0965	33.89	33.866	33.962	0	138	55	1.5369828	0.031863213	1.5369828	312.07507	0	6.469635						118	5	2	NaN	NaN	NaN	0.078597	1	8427	8427		38.918	10.251	1	15469	+		5416	13639	3160	3216	4282	4282					0.07120716596739385
FIHKCPLIR	9	Unmodified	_FIHKCPLIR_					0	0	0			REV__ENSG00000163162|ENST00000295317|RNF149	REV__ENSG00000163162|ENST00000295317|RNF149	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.83132885745	2	563.831329	1125.6481	2.415	0.0013616	-10.712	-0.0060398	-8.297	-0.0046781	564.3258800416932	18.676	0.095919	18.676	18.628	18.724	0	1197	52	0.9001988	0.03125626	0.9001988	364.97855	0	12.672607						124	5	3	NaN	NaN	NaN	0.39244	1	13925	13925		14.042	2.8713	1	17416	+		5417	10273	3161	3217	4283	4283					0.09030665350042
FIHKCPLIR	9	Unmodified						0	0	0			REV__ENSG00000163162|ENST00000295317|RNF149	REV__ENSG00000163162|ENST00000295317|RNF149	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.831329	1125.6481	2.415	0.0013616	-10.712	-0.0060398	-8.297	-0.0046781	564.3258800416932	18.676	0.095919	18.676	18.628	18.724	0	1197	52	0.9001988	0.03125626	0.9001988	364.97855		12.672607	0	0	0	NaN	14.042	124	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17416	+		5418	10273	3161	3217							0.09030665350042
FIHQRLQEND	10	Unmodified	_FIHQRLQEND_					0	0	0		ENST00000521384.5_1_5:21751848-21889748:-|nuORF;nc|ENSG00000154162|P55289-2|CDH12;ENSG00000154162|ENST00000382254|CDH12	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.8861924839333	3	433.886192	1298.63675	1.7791	0.00077192	-6.7778	-0.0029408	-4.9987	-0.0021689	433.88348692252004	13.613	0.12003	13.613	13.565	13.685	0	1458	37	0.7395112	0.022268474	0.7395112	449.01428	0	13.520905						82	6	2	NaN	NaN	NaN	0.75966	1	18751	18751		5.4499	4.0659	1	8747.4			5419	3831	3162	3218	4284	4284					-0.0006248521037832688
FIHREEYSL	9	Unmodified	_FIHREEYSL_					0	0	0		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3011127638	2	597.301113	1192.58767	1.4631	0.00087389	-2.9505	-0.0017623	-1.4874	-0.00088843	597.2993701121981	16.949	0.095905	16.949	16.925	17.021	0	1173	61	0.91489893	0.036750257	0.91489893	370.68652	0	14.889984						130	5	3	NaN	NaN	NaN	0.1507	1	16219	16219		28.495	5.1609	1	11292			5420	3236	3163	3219	4285	4285					-0.00091773499343617
FIKPRTLL	8	Unmodified	_FIKPRTLL_					0	0	0		ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.6349633822002	1	987.634963	986.627687	1.7662	0.0017443	-3.1935	-0.003154	-1.4273	-0.0014097	987.6311857167046	38.562	0.048164	38.566	38.517	38.566	0.0040245	204	61	1.4979934	0.035490036	1.496474	304.19617	0	7.2069397						78	3	2	NaN	NaN	NaN	0.55996	1	7950	7950		27.789	4.4544	1	10806			5421	5327	3164	3220	4286	4286					0.13383817961903333
FILEDSTSL	9	Unmodified	_FILEDSTSL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5197184324	1	1024.51972	1023.51244	2.1463	0.0021989	1.7687	0.001812	3.915	0.004011	1024.5211345278262	27.229	0.16891	27.229	27.181	27.35	0	219	160	1.4891195	0.094023824	1.4891195	302.24396	0	19.083832						441	8	2	NaN	NaN	NaN	0.023074	1	9500	9500		68.108	12.161	1	91428		+	5422	199	3165	3221	4287	4287					0.0016262424957176336
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5782363643	1	1099.57824	1098.57096	1.5133	0.0016639	0.53965	0.00059339	2.0529	0.0022573	1099.5791709057717	24.55	0.024113	24.55	24.55	24.574	0	72	49	1.5758814	0.028259993	1.5758814	319.56317	0	5.730652						54	2	2	NaN	NaN	NaN	0.3106	1	12793	12793		18.233	4.7704	1	5493.4			5423	2715	3166	3222	4288	4288					0.025617256147143053
FIRFPLTFV	9	Unmodified	_FIRFPLTFV_					0	0	0			REV__LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	REV__LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3342272996499	2	570.334227	1138.6539	1.256	0.00071634	-7.4096	-0.0042259	-6.1536	-0.0035096	570.3298220739192	20.213	0.26473	20.198	20.03	20.295	-0.014141	1185	49	0.90755045	0.029409707	0.906031	367.90833	0	11.922302						175	12	2	NaN	NaN	NaN	0.66529	1	13944	13944		2.1763	0	1	17365	+		5424	9773	3167	3223	4289	4289					0.0901208713332835
FISDWNNFL	9	Unmodified	_FISDWNNFL_					0	0	0			REV__ENSG00000204291|ENST00000375001|COL15A1	REV__ENSG00000204291|ENST00000375001|COL15A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.27710635125	2	578.277106	1154.53966	1.063	0.0006147	-5.8956	-0.0034093	-4.8326	-0.0027946	578.7737323983911	30.679	0.072397	30.673	30.625	30.698	-0.0057545	1209	82	0.892844	0.049669147	0.8913246	361.88693	0	20.131866						169	4	3	NaN	NaN	NaN	0.41766	1	14463	14463		13.003	2.6427	1	16133	+		5425	11232	3168	3224	4290	4290					-0.03142847419394457
FISEYALDL	9	Unmodified	_FISEYALDL_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5404538745	1	1070.54045	1069.53318	1.7248	0.0018464	-0.96447	-0.0010325	0.76028	0.00081392	1070.540330001098	36.374	0.16882	36.374	36.326	36.495	0	87	100	1.5670487	0.058332443	1.5670487	317.87912	0	11.832855						425	8	4	NaN	NaN	NaN	0.030391	1	11539	11539		58.599	2.6518	1	63254			5426	1647	3169	3225	4291	4291					0.001192146292396501
FISVDVTIV	9	Unmodified	_FISVDVTIV_					0	0	0			REV__ENSG00000144668|ENST00000264741|ITGA9	REV__ENSG00000144668|ENST00000264741|ITGA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945002	1	992.566275	991.558998	1.6914	0.0016788	-0.11189	-0.00011106	1.5795	0.0015678	992.5660252179507	31.765	0.28963	31.761	31.688	31.978	-0.0044155	210	247	1.4944444	0.14583457	1.4929249	303.45468	0	29.612457						1351	13	5	NaN	NaN	NaN	0.03623	1	8122	8122		52.758	2.9254	1	998240	+		5427	9907	3170	3226	4292	4292					0.06288108871535769
FITQDLVI	8	Unmodified	_FITQDLVI_					0	0	0			REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	1.1334	0.0010751	-2.0921	-0.0019845	-0.95871	-0.00090938	948.5385352814401	34.251	0.12055	34.249	34.201	34.322	-0.0012474	288	76	1.4482387	0.044501662	1.4467193	294.25967	0	9.042053						195	6	3	NaN	NaN	NaN	0.528	1	6897	6897		29.598	3.4834	1	18214	+		5428	11676	3171	3227	4293	4293					0.056918397000458754
FITQDLVI	8	Unmodified						0	0	0			REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.54006	947.532783	1.1555	0.001096	-4.783	-0.0045369	-3.6275	-0.0034409	948.5342406949177	34.107	0.072399	34.107	34.083	34.155	0	291	52	1.446459	0.030248284	1.446459	293.89807		6.145996	-0.071172	-0.0018787	-0.00013013	NaN	29.598	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9696.6	+		5429	11676	3171	3227							0.056918397000458754
FITQDLVI	8	Unmodified						0	0	0			REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.54006	947.532783	1.1334	0.0010751	-2.0921	-0.0019845	-0.95871	-0.00090938	948.5385352814401	34.251	0.12055	34.249	34.201	34.322	-0.0012474	288	76	1.4482387	0.044501662	1.4467193	294.25967		9.042053	0.071172	0.0006737	0.00013013	NaN	29.598	195	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18214	+		5430	11676	3171	3227							0.056918397000458754
FITTESLIL	9	Unmodified	_FITTESLIL_					0	0	0			REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5924894450002	1	1036.59249	1035.58521	1.4779	0.0015319	0.23009	0.00023851	1.7079	0.0017704	1036.5921709209042	30.487	0.14478	30.487	30.439	30.584	0	87	76	1.5670487	0.044186592	1.5670487	318.01184	0	8.967072						261	7	3	NaN	NaN	NaN	0.04947	1	10026	10026		47.136	0.095649	1	41851	+		5431	8118	3172	3228	4294	4294					0.06884378043014294
FITTESLIL	9	Unmodified						0	0	0			REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1036.59249	1035.58521	1.4779	0.0015319	0.23009	0.00023851	1.7079	0.0017704	1036.5921709209042	30.487	0.14478	30.487	30.439	30.584	0	87	76	1.5670487	0.044186592	1.5670487	318.01184		8.967072	0.0033666	-2.3672E-05	-0.00012373	NaN	47.136	261	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41851	+		5432	8118	3172	3228							0.06884378043014294
FITTTFLGF	9	Unmodified	_FITTTFLGF_					0	0	0			REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5557100082	1	1046.55571	1045.54843	1.876	0.0019634	-0.23893	-0.00025005	1.6371	0.0017133	1046.5551953112665	34.71	0.1447	34.71	34.686	34.831	0	81	103	1.5705823	0.060109615	1.5705823	318.689	0	12.19693						369	7	3	NaN	NaN	NaN	0.012648	1	10454	10454		84.879	12.886	1	65718	+		5433	8961	3173	3229	4295	4295					0.027481262171022536
FITTTFLGF	9	Unmodified						0	0	0			REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1046.55571	1045.54843	1.876	0.0019634	-0.23893	-0.00025005	1.6371	0.0017133	1046.5551953112665	34.71	0.1447	34.71	34.686	34.831	0	81	103	1.5705823	0.060109615	1.5705823	318.689		12.19693	0.001023	-0.00039134	-0.00012354	NaN	84.879	369	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65718	+		5434	8961	3173	3229							0.027481262171022536
FIVMQSVFYP	10	Unmodified	_FIVMQSVFYP_					0	0	0		ENST00000476624.1_1_9:130688090-130689999:-|nuORF;ENST00000464108.5_1_9:130687427-130689571:-|nuORF;ENST00000490773.5_1_9:130687427-130690958:-|nuORF;ENST00000498783.5_1_9:130687427-130690958:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1	ENST00000476624.1_1_9:130688090-130689999:-|nuORF	ENST00000476624.1_1_9:130688090-130689999:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.8150100912501	2	615.81501	1229.61547	0.90953	0.0005601	-3.4507	-0.002125	-2.5412	-0.0015649	615.8128998384034	27.446	0.1448	27.446	27.398	27.543	0	1173	88	0.91489893	0.053239048	0.91489893	370.55884	0	21.563263						203	7	3	NaN	NaN	NaN	0.64158	1	17253	17253		12.049	2.3027	1	34052			5435	4525	3174	3230	4296	4296					0.009844134365494028
FIYHRFVYNIK	11	Unmodified	_FIYHRFVYNIK_					0	0	0			REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.61011140916673	3	500.610111	1498.8085	2.2356	0.0011192	2.3709	0.0011869	4.6066	0.0023061	500.9459709510639	18.818	0.048019	18.804	18.78	18.828	-0.014059	1389	28	0.7821392	0.01666063	0.78061974	474.2297	0	10.101715						50	3	3	NaN	NaN	NaN	0.78047	1	19564	19564		0.15888	0	1	3187.5	+		5436	9665	3175	3231	4297	4297					0.07905291547945126
FIYIFNFWFNV	11	Unmodified	_FIYIFNFWFNV_					0	0	0			REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.9236960047	3	503.923696	1508.74926	1.9174	0.00096621	5.1972	0.002619	7.1146	0.0035852	503.9267090866982	25.636	0.12062	25.624	25.624	25.745	-0.0116	1416	37	0.76547134	0.022237062	0.7639519	464.09564	0	13.482056						82	6	2	NaN	NaN	NaN	0.76654	1	19593	19593		0.88464	0	1	9667.2	+		5437	12765	3176	3232	4298	4298					0.015233955337407679
FKCLSIIDKL	10	Unmodified	_FKCLSIIDKL_					0	0	0		tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3439347062	2	590.343935	1178.67332	1.1037	0.00065154	-5.0966	-0.0030087	-3.9929	-0.0023572	590.3408143188522	22.693	0.21696	22.68	22.607	22.824	-0.01354	1143	67	0.9332562	0.04038602	0.93173677	378.17535	0	16.365295						333	10	3	NaN	NaN	NaN	0.4422	1	15212	15212		21.85	0	1	41274			5438	13788	3177	3233	4299	4299					0.09112675361939182
FKFIIPNVV	9	Unmodified	_FKFIIPNVV_					0	0	0		ENST00000398295.3_1_2:85004811-85005102:-|nuORF;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000398295.3_1_2:85004811-85005102:-|nuORF	ENST00000398295.3_1_2:85004811-85005102:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.8287777810001	2	538.828778	1075.643	0.86021	0.0004635	-0.84799	-0.00045692	0.012217	6.5828E-06	538.8283746195334	31.427	0.26543	31.423	31.326	31.592	-0.0044155	1233	52	0.87812483	0.031290054	0.8766054	356.22894	0	12.69342						400	12	5	NaN	NaN	NaN	0.31737	1	11496	11496		17.799	1.2148	1	120750			5439	2869	3178	3234	4300	4300					0.10820684759096366
FKFIIPNVV	9	Unmodified						0	0	0		ENST00000398295.3_1_2:85004811-85005102:-|nuORF;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000398295.3_1_2:85004811-85005102:-|nuORF	ENST00000398295.3_1_2:85004811-85005102:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.828778	1075.643	1.1214	0.00060426	-1.0858	-0.00058506	0.035637	1.9202E-05	538.8280951115396	31.38	0.28964	31.38	31.332	31.621	0	1236	52	0.876284	0.03129351	0.876284	355.48218		12.694824	-0.021383	-0.0001303	-0.00016068	NaN	17.799	368	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120020			5440	2869	3178	3234							0.10820684759096366
FKFLLQEEI	9	Unmodified	_FKFLLQEEI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8264320573002	2	583.826432	1165.63831	1.7037	0.00099465	-2.3865	-0.0013933	-0.68281	-0.00039864	583.825501231795	27.326	0.14483	27.326	27.302	27.446	0	1158	46	0.92408	0.027537405	0.92408	374.5054	0	11.160187						134	7	3	NaN	NaN	NaN	0.25448	1	15333	15333		21.835	0	1	27669			5441	76	3179	3235	4301	4301					0.062117558256886696
FKFTPFTNM	9	Unmodified	_FKFTPFTNM_					0	0	0			REV__ENSG00000154723|ENST00000284971|ATP5PF	REV__ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7784276197001	2	566.778428	1131.5423	2.3744	0.0013458	5.2674	0.0029854	7.6418	0.0043312	566.7817584366213	18.268	0.095852	18.268	18.221	18.316	0	1221	46	0.885486	0.02759999	0.885486	358.99063	0	11.189484						135	5	3	NaN	NaN	NaN	0.46215	1	14144	14144		11.17	1.4243	1	22680	+		5442	10097	3180	3236	4302	4302					-0.01820715286066843
FKFTPFTNM	9	Unmodified						0	0	0			REV__ENSG00000154723|ENST00000284971|ATP5PF	REV__ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.778428	1131.5423	2.3744	0.0013458	5.2674	0.0029854	7.6418	0.0043312	566.7817584366213	18.268	0.095852	18.268	18.221	18.316	0	1221	46	0.885486	0.02759999	0.885486	358.99063		11.189484	0	0	0	NaN	11.17	135	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22680	+		5443	10097	3180	3236							-0.01820715286066843
FKGGAASI	8	Unmodified	_FKGGAASI_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.4144654999001	1	750.414465	749.407189	1.305	0.0009793	5.3777	0.0040355	6.6827	0.0050148	750.4180270282742	24.261	0.048231	24.261	24.237	24.285	0	555	187	1.2891023	0.11126733	1.2891023	262.91556	0	22.693253						188	3	2	NaN	NaN	NaN	0.84455	1	4045	4045		2.7852	0.32367	1	31452	+		5444	9625	3181	3237	4303	4303					0.022461726344772615
FKGGAASI	8	Unmodified						0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	750.414465	749.407189	1.305	0.0009793	5.3777	0.0040355	6.6827	0.0050148	750.4180270282742	24.261	0.048231	24.261	24.237	24.285	0	555	187	1.2891023	0.11126733	1.2891023	262.91556		22.693253	0.0065195	-0.00016835	0.001658	NaN	2.7852	188	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31452	+		5445	9625	3181	3237							0.022461726344772615
FKGHPDLIMGF	11	Unmodified	_FKGHPDLIMGF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.2181145656	3	421.218115	1260.63251	1.1942	0.00050303	-3.7967	-0.0015992	-2.6024	-0.0010962	421.21651962735297	22.741	0.14454	22.728	22.704	22.848	-0.01354	1455	34	0.7413668	0.02041161	0.73984736	450.2835	0	12.3974						85	7	2	NaN	NaN	NaN	0.70989	1	17234	17234		6.8076	1.7907	1	9896.7			5446	4671	3182	3238	4304	4304					0.012623340423260743
FKLKPMLIY	9	Unmodified	_FKLKPMLIY_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.8998343251334	3	384.899834	1151.67767	2.7042	0.0010409	2.8799	0.0011085	5.5842	0.0021494	385.23552211750655	17.018	0.095896	17.005	16.933	17.029	-0.013294	1494	25	0.7172283	0.014864981	0.71570885	436.068	0	9.03775						41	5	2	NaN	NaN	NaN	0.62619	1	14367	14367		2.3381	0	1	2513.1			5447	6012	3183	3239	4305	4305					0.1079018457555776
FKQNDTKAL	9	Unmodified	_FKQNDTKAL_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.790380902	2	532.790381	1063.56621	-0.68976	-0.0003675	0.92547	0.00049308	0.23571	0.00012559	533.291493077931	54.522	0.14464	54.521	54.497	54.642	-0.0006218	1281	49	0.84864825	0.029505253	0.8471288	344.3206	0	11.97113						101	7	2	NaN	NaN	NaN	0.66196	1	11028	11028		2.4615	0	1	7763.6			5448	2535	3184	3240	4306	4306					0.036968414719467546
FKRHRFLKRIR	11	Unmodified	_FKRHRFLKRIR_					0	0	0			REV__ENST00000515014.5_1_5:137497515-137500639:-|nuORF	REV__ENST00000515014.5_1_5:137497515-137500639:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1556.9760789563	1	1556.97608	1555.9688	1.3252	0.0020633	0.18611	0.00028978	1.5113	0.0023531	1556.9753048033658	41.593	0.072121	41.601	41.553	41.625	0.0082588	390	61	1.3876231	0.035705566	1.3861036	280.35873	0	7.2140503						75	4	2	NaN	NaN	NaN	0.78138	1	19683	19683		0	0	1	6732	+		5449	12573	3185	3241	4307	4307					0.21305684055482743
FKSLLIQEL	9	Unmodified	_FKSLLIQEL_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.8289747462501	2	545.828975	1089.6434	1.6225	0.00088561	-1.0284	-0.00056136	0.59406	0.00032426	545.8287420094117	27.664	0.26542	27.664	27.615	27.881	0	1218	55	0.8873258	0.033110976	0.8873258	359.903	0	13.429962						374	12	5	NaN	NaN	NaN	0.037557	1	12393	12393		66.481	13.702	1	139720			5450	2822	3186	3242	4308	4308					0.10216059688286805
FKTFILMAA	9	Unmodified	_FKTFILMAA_					0	0	0		nc|ENSG00000124568|Q14916-2|SLC17A1;ENSG00000124568|ENST00000244527|SLC17A1	nc|ENSG00000124568|Q14916-2|SLC17A1	nc|ENSG00000124568|Q14916-2|SLC17A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5801506197001	1	1041.58015	1040.57287	0.6193	0.00064505	-4.4702	-0.0046561	-3.8509	-0.004011	1041.5764497893608	33.671	0.12062	33.67	33.621	33.742	-0.0018463	87	130	1.5670487	0.0760653	1.5655292	317.99182	0	15.435486						183	6	2	NaN	NaN	NaN	0.31737	1	10031	10031		17.799	1.2148	1	21483			5451	2422	3187	3243	4309	4309					0.0542106309897008
FKTIQLCL	8	Unmodified	_FKTIQLCL_					0	0	0		ENST00000370920.7_1_1:71530559-71530637:-|nuORF	ENST00000370920.7_1_1:71530559-71530637:-|nuORF	ENST00000370920.7_1_1:71530559-71530637:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.5488504913	1	965.54885	964.541574	1.2939	0.0012493	4.0688	0.0039286	5.3627	0.005178	965.5525377591777	35.916	0.09639	35.916	35.868	35.964	0	192	58	1.5050892	0.033699393	1.5050892	305.7335	0	6.845459						101	5	2	NaN	NaN	NaN	0.72013	1	7472	7472		17.799	2.3363	1	8498.1			5452	6651	3188	3244	4310	4310					0.05788490064855978
FLAFVLAFL	9	Unmodified	_FLAFVLAFL_					0	0	0		tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.8125964005501	2	520.812596	1039.61064	1.4108	0.00073474	-4.3303	-0.0022553	-2.9195	-0.0015205	520.8103260578042	29.377	0.14475	29.377	29.329	29.474	0	1233	73	0.87812483	0.044181406	0.87812483	356.385	0	17.930939						269	7	3	NaN	NaN	NaN	0.10053	1	10214	10214		35.745	6.1463	1	47063			5453	13790	3189	3245	4311	4311					0.09241897356082518
FLAICSEIFF	10	Unmodified	_FLAICSEIFF_					0	0	0			REV__nc|ENSG00000110911|P49281-5|SLC11A2	REV__nc|ENSG00000110911|P49281-5|SLC11A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1189.5961946143998	1	1189.59619	1188.58892	2.2983	0.0027341	-4.8405	-0.0057582	-2.5422	-0.0030242	1189.5912295952335	37.145	0.072388	37.145	37.097	37.169	0	51	46	1.5882392	0.02647543	1.5882392	321.7663	0	5.363739						60	4	2	NaN	NaN	NaN	0.73444	1	16114	16114		5.6942	0.2283	1	3914.7	+		5454	9085	3190	3246	4312	4312					0.0021672454518011364
FLAVSSLGSC	10	Unmodified	_FLAVSSLGSC_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2469603158001	2	492.24696	982.479368	1.6626	0.00081842	1.757	0.00086489	3.4196	0.0016833	492.2495995215647	15.508	0.071965	15.496	15.496	15.568	-0.012202	1347	43	0.8080346	0.02588147	0.8065152	328.18814	0	10.511902						60	4	2	NaN	NaN	NaN	0.67523	1	7794	7794		9.746	0.78402	1	4385.5			5455	8007	3191	3247	4313	4313					-0.012572810741062312
FLAVTKPDW	9	Unmodified	_FLAVTKPDW_					0	0	0			REV__ENST00000592072.1_1_17:40939341-40946077:+|nuORF	REV__ENST00000592072.1_1_17:40939341-40946077:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.53068700533333	3	359.530687	1075.57023	2.1792	0.0007835	7.5499	0.0027144	9.7291	0.0034979	359.53371284670084	16.973	0.047962	16.973	16.949	16.997	0	1488	28	0.7209441	0.016718566	0.7209441	438.6933	0	10.173218						30	3	2	NaN	NaN	NaN	0.58159	1	11804	11804		5.9198	2.6588	1	1990.2	+		5456	12926	3192	3248	4314	4314					0.035469309656718906
FLCFFFLF	8	Unmodified	_FLCFFFLF_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5372231724998	1	1083.53722	1082.52995	1.6413	0.0017784	-0.32977	-0.00035732	1.3116	0.0014211	1083.5370969650116	35.77	0.096394	35.77	35.77	35.867	0.00053024	96	40	1.5617468	0.02297461	1.5602274	316.7552	0	4.659729						72	5	2	NaN	NaN	NaN	0.77734	1	11777	11777		12.26	2.2081	1	4013.1			5457	6585	3193	3249	4315	4315					-0.008017069584866476
FLCIFCEVFL	10	Unmodified	_FLCIFCEVFL_					0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.30596363865	2	617.305964	1232.59737	0.72175	0.00044554	0.84933	0.0005243	1.5711	0.00096984	617.3070606435133	32.73	0.096508	32.727	32.655	32.751	-0.0031052	1149	34	0.92958635	0.020185351	0.9280669	376.4975	0	8.175415						70	5	2	NaN	NaN	NaN	0.77421	1	16612	16612		1.9246	0.6828	1	7154.4	+		5458	13045	3194	3250	4316	4316					-0.009620448098303314
FLCIFCEVFL	10	Unmodified						0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	617.305964	1232.59737	0.96774	0.00059739	2.2548	0.0013919	3.2226	0.0019893	617.8080564918844	33.045	0.072407	33.045	33.021	33.094	0	1155	34	0.92591566	0.020185351	0.92591566	375.01083		8.175415	0.15897	0.00080374	-0.0010756	NaN	1.9246	31	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1859.8	+		5459	13045	3194	3250							-0.009620448098303314
FLCIFCEVFL	10	Unmodified						0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|107|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.305964	1232.59737	0.72175	0.00044554	0.84933	0.0005243	1.5711	0.00096984	617.3070606435133	32.73	0.096508	32.727	32.655	32.751	-0.0031052	1149	34	0.92958635	0.020185351	0.9280669	376.4975		8.175415	-0.15897	-0.00093152	0.0010756	NaN	1.9246	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7154.4	+		5460	13045	3194	3250							-0.009620448098303314
FLCLLFIVFPA	11	Unmodified	_FLCLLFIVFPA_					0	0	0		chr12:69359236-69362788|165|13.48|0.22|5.96|+|2|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|3	chr12:69359236-69362788|165|13.48|0.22|5.96|+|2|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|3	chr12:69359236-69362788|165|13.48|0.22|5.96|+|2|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8670456617501	2	641.867046	1281.71954	1.2639	0.00081127	-9.0837	-0.0058305	-7.8198	-0.0050193	642.8637083919365	41.089	0.096104	41.089	41.041	41.137	0	1053	34	0.9882094	0.020117998	0.9882094	400.07092	0	8.144684						85	5	3	NaN	NaN	NaN	0.77743	1	18459	18459		0.69115	0.17511	1	4213.5			5461	127	3195	3251	4317	4317					0.08994740264074608
FLCLQFLYA	9	Unmodified	_FLCLQFLYA_					0	0	0			REV__ENST00000397776.2_1_1:158424733-158425060:+|nuORF	REV__ENST00000397776.2_1_1:158424733-158425060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2911708542001	2	559.291171	1116.56779	1.702	0.00095189	-5.8496	-0.0032716	-4.1476	-0.0023197	559.2881074035453	39.018	0.048035	39.023	38.975	39.023	0.0046806	1221	58	0.885486	0.034978867	0.88396657	359.04865	0	14.183258						71	3	2	NaN	NaN	NaN	0.36492	1	13142	13142		15.175	1.1338	1	4964.6	+		5462	12019	3196	3252	4318	4318					0.014167592363492076
FLCRQTDLL	9	Unmodified	_FLCRQTDLL_					0	0	0		tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7946090001501	2	554.794609	1107.57467	0.97821	0.0005427	-0.31753	-0.00017616	0.66068	0.00036654	555.2937821733466	24.478	0.072313	24.478	24.478	24.55	0	1227	43	0.88180584	0.025764108	0.88180584	357.59177	0	10.447937						97	4	3	NaN	NaN	NaN	0.60736	1	13184	13184		5.1889	0	1	6232.8			5463	13841	3197	3253	4319	4319					0.025180721169363096
FLCRQTDLL	9	Unmodified						0	0	0		tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	tr|U7ST66|U7ST66_FUSNU2-dehydro-3-deoxyphosphooctonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kdsAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.794609	1107.57467	1.3732	0.00076185	-3.7195	-0.0020635	-2.3463	-0.0013017	555.7943286618926	24.357	0.1207	24.344	24.296	24.417	-0.012747	1236	46	0.876284	0.027617872	0.8747646	355.35257		11.199646	-0.066805	-0.0012467	-0.0035206	NaN	5.1889	111	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11114			5464	13841	3197	3253							0.025180721169363096
FLCSASSS	8	Unmodified	_FLCSASSS_					0	0	0		ENST00000532535.5_1_11:3819166-3845134:+|nuORF	ENST00000532535.5_1_11:3819166-3845134:+|nuORF	ENST00000532535.5_1_11:3819166-3845134:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.17600371065	2	401.176004	800.337454	0.83591	0.00033535	-5.6324	-0.0022596	-4.7965	-0.0019242	401.17342097226464	32.732	0.16889	32.732	32.683	32.852	0	1452	79	0.74322224	0.048274457	0.74322224	302.81073	0	19.668427						175	8	3	NaN	NaN	NaN	0.80071	1	4748	4748		9.1232	1.5828	1	15630			5465	7455	3198	3254	4320	4320					-0.07070074096452572
FLCTLDPIVL	10	Unmodified	_FLCTLDPIVL_					0	0	0			REV__ENST00000404735.1_1_2:55459884-55460500:+|nuORF	REV__ENST00000404735.1_1_2:55459884-55460500:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3173856047	2	567.317386	1132.62022	1.3816	0.00078381	-6.0212	-0.0034159	-4.6396	-0.0026321	567.3142185508241	35.603	0.24117	35.603	35.53	35.771	0	1224	58	0.883646	0.034967482	0.883646	358.24063	0	14.176239						370	11	5	NaN	NaN	NaN	0.40641	1	14198	14198		23.334	0	1	103570	+		5466	12046	3199	3255	4321	4321					0.059212975792888756
FLCTLDPIVL	10	Unmodified						0	0	0			REV__ENST00000404735.1_1_2:55459884-55460500:+|nuORF	REV__ENST00000404735.1_1_2:55459884-55460500:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.317386	1132.62022	1.3816	0.00078381	-6.0212	-0.0034159	-4.6396	-0.0026321	567.3142185508241	35.603	0.24117	35.603	35.53	35.771	0	1224	58	0.883646	0.034967482	0.883646	358.24063		14.176239	0.0004804	-0.0010937	0.00075972	NaN	23.334	370	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103570	+		5467	12046	3199	3255							0.059212975792888756
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5200527834	1	1021.52005	1020.51278	2.5982	0.0026541	0.81327	0.00083077	3.4114	0.0034848	1021.5214595346017	29.28	0.19303	29.28	29.232	29.425	0	165	130	1.5210435	0.07625103	1.5210435	308.7356	0	15.477142						692	9	3	NaN	NaN	NaN	0.02857	1	9387	9387		60.982	2.7461	1	288750			5468	5968	3200	3256	4322	4322					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5200527834	1	1021.52005	1020.51278	1.8499	0.0018897	1.0973	0.0011209	2.9472	0.0030106	1021.5215240778981	29.28	0.21714	29.272	29.224	29.441	-0.0077229	162	139	1.5228153	0.081575274	1.5212959	309.09525	0	16.55783						632	10	3	NaN	NaN	NaN	0.017076	1	9198	9198		75.698	2.5655	1	281930			5469	5968	3200	3256	4323	4323					0.003340439694284214
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.4764734092	1	1039.47647	1038.4692	1.6347	0.0016992	0.59657	0.00062012	2.2313	0.0023194	1039.476256587382	27.591	0.2172	27.591	27.519	27.736	0	186	109	1.5086359	0.06384826	1.5086359	306.14655	0	12.956665						500	10	4	NaN	NaN	NaN	0.015447	1	10122	10122		77.761	41.174	1	75619			5470	4679	3201	3257	4324	4324					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.4764734092	1	1039.47647	1038.4692	1.14	0.0011851	1.0376	0.0010785	2.1776	0.0022636	1039.4773769846868	27.615	0.19303	27.605	27.557	27.75	-0.009552	183	103	1.510409	0.06028819	1.5088896	306.50635	0	12.234253						511	9	4	NaN	NaN	NaN	0.060816	1	9917	9917		42.318	17.756	1	74966			5471	4679	3201	3257	4325	4325					-0.04849888799344626
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(87)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.4713880313	1	1055.47139	1054.46411	2.3315	0.0024609	-0.67524	-0.0007127	1.6563	0.0017482	1055.4702539641148	23.61	0.19276	23.61	23.562	23.754	0	183	103	1.510409	0.060281873	1.510409	306.4454	0	12.23056						335	9	4	NaN	NaN	NaN	0.012018	1	10824	10824		86.792	44.475	1	51403			5472	4679	3201	3258	4326	4326		499			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(130)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.4713880313	1	1055.47139	1054.46411	2.0289	0.0021414	-0.18335	-0.00019353	1.8455	0.0019479	1055.4706815802274	23.609	0.1687	23.596	23.572	23.741	-0.013048	183	82	1.510409	0.047853112	1.5088896	306.4454	0	9.708862						311	8	3	NaN	NaN	NaN	1.7723E-07	1	10597	10597		134.97	90.335	1	51893			5473	4679	3201	3258	4327	4327		499			-0.060941926619761944
FLDLSIIRF	9	Unmodified	_FLDLSIIRF_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.3291419217501	2	562.329142	1122.64373	0.9729	0.00054709	-4.6381	-0.0026081	-3.6652	-0.002061	562.3263689643231	33.407	0.12067	33.407	33.383	33.504	0	1209	37	0.892844	0.022069216	0.892844	362.00827	0	8.94809						131	6	3	NaN	NaN	NaN	0.33202	1	13804	13804		16.858	5.688	1	14224			5474	5674	3202	3259	4328	4328					0.08731479408129417
FLDLSIIRF	9	Unmodified	_FLDLSIIRF_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.3291419217501	2	562.329142	1122.64373	0.68918	0.00038755	-4.2402	-0.0023844	-3.551	-0.0019968	562.3270061225039	33.43	0.12065	33.428	33.38	33.501	-0.0018501	1206	37	0.894683	0.022066832	0.89316356	362.7539	0	8.947113						130	6	4	NaN	NaN	NaN	0.04743	1	13386	13386		48.002	10.7	1	13671			5475	5674	3202	3259	4329	4329					0.08731479408129417
FLDPGTSVL	9	Unmodified	_FLDPGTSVL_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5036744377002	1	948.503674	947.496398	1.7901	0.0016979	-0.22564	-0.00021402	1.5644	0.0014838	948.5029482269048	27.929	0.07239	27.929	27.881	27.953	0	273	52	1.4571344	0.03023541	1.4571344	296.06726	0	6.1433716						72	4	2	NaN	NaN	NaN	0.62619	1	7021	7021		4.4131	2.2368	1	5429.5			5476	3198	3203	3260	4330	4330					0.020549628033450063
FLDPGTSVL	9	Unmodified	_FLDPGTSVL_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5036744377002	1	948.503674	947.496398	1.3668	0.0012964	1.2461	0.001182	2.6129	0.0024784	948.5046725857369	27.928	0.096508	27.919	27.895	27.991	-0.009552	270	46	1.458913	0.026678443	1.4573935	296.42865	0	5.420624						80	5	2	NaN	NaN	NaN	0.63698	1	6890	6890		3.9685	0.39873	1	6326			5477	3198	3203	3260	4331	4331					0.020549628033450063
FLDTEVFV	8	Unmodified	_FLDTEVFV_					0	0	0		ENST00000462363.6_1_1:198608398-198672548:+|nuORF;nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	ENST00000462363.6_1_1:198608398-198672548:+|nuORF	ENST00000462363.6_1_1:198608398-198672548:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4927754004002	1	969.492775	968.485499	1.3291	0.0012885	3.1152	0.0030202	4.4443	0.0043087	969.4965208633558	30.897	0.048241	30.897	30.873	30.922	0	243	49	1.4749115	0.028434277	1.4749115	299.5862	0	5.7756042						60	3	2	NaN	NaN	NaN	0.80071	1	7565	7565		9.1232	0.83292	1	3774.6			5478	919	3204	3261	4332	4332					-4.395709424898087E-06
FLDTEVFV	8	Unmodified						0	0	0		ENST00000462363.6_1_1:198608398-198672548:+|nuORF;nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	ENST00000462363.6_1_1:198608398-198672548:+|nuORF	ENST00000462363.6_1_1:198608398-198672548:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	969.492775	968.485499	1.4585	0.001414	-0.40916	-0.00039668	1.0493	0.0010173	969.4930162860579	30.896	0.096573	30.891	30.866	30.963	-0.0057545	237	43	1.4784646	0.024872065	1.4769452	300.30795		5.0520325	-0.0033982	-0.0014551	0.0010169	NaN	9.1232	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5159.4			5479	919	3204	3261							-4.395709424898087E-06
FLDTLQTLLEF	11	Unmodified	_FLDTLQTLLEF_					0	0	0		ENSG00000123080|ENST00000371761|CDKN2C	ENSG00000123080|ENST00000371761|CDKN2C	ENSG00000123080|ENST00000371761|CDKN2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.36083598065	2	670.360836	1338.70712	1.926	0.0012911	6.2773	0.004208	8.2033	0.0054992	670.3651044824591	25.732	0.096504	25.732	25.708	25.805	0	1092	64	0.9644182	0.038448572	0.9644182	390.26187	0	15.558594						184	5	3	NaN	NaN	NaN	0.40559	1	19393	19393		21.85	4.9921	1	24227			5480	2355	3205	3262	4333	4333					0.05131375334690347
FLEFMRQI	8	Unmodified	_FLEFMRQI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.565563188	1	1083.56556	1082.55829	1.2456	0.0013496	-0.34506	-0.0003739	0.90049	0.00097574	1084.5655483730006	32.539	0.14476	32.539	32.466	32.611	0	90	67	1.5652816	0.03887379	1.5652816	317.472	0	7.88443						132	7	2	NaN	NaN	NaN	0.69631	1	12103	12103		19.285	2.8681	1	10465			5481	4358	3206	3263	4334	4334					0.020309909508114288
FLEKRYNEDLE	11	Unmodified	_FLEKRYNEDLE_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.3593559242	2	728.359356	1454.70416	0.7221	0.00052595	8.3051	0.0060491	9.0272	0.0065751	728.3654426506288	31.646	0.12069	31.646	31.597	31.718	0	1014	61	1.0119673	0.036533058	1.0119673	409.1693	0	14.771393						141	6	3	NaN	NaN	NaN	0.6875	1	20402	20402		8.2775	1.2932	1	10250			5482	1606	3207	3264	4335	4335					-0.005004997901096431
FLERGEVMNL	10	Unmodified	_FLERGEVMNL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.20950762560005	3	403.209508	1206.60669	1.107	0.00044633	5.3914	0.0021739	6.4983	0.0026202	403.21152623115404	11.91	0.19194	11.902	11.854	12.046	-0.0081854	1449	40	0.74507743	0.024114966	0.743558	452.7563	0	14.653778						241	9	3	NaN	NaN	NaN	0.6772	1	15985	15985		5.2847	2.0237	1	34035			5483	5219	3208	3265	4336	4336					0.011654398000700894
FLETIACY	8	Unmodified	_FLETIACY_					0	0	0		ENST00000278174.9_1_11:13410333-13410381:-|nuORF	ENST00000278174.9_1_11:13410333-13410381:-|nuORF	ENST00000278174.9_1_11:13410333-13410381:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.4542814040999	1	959.454281	958.447005	1.9445	0.0018656	-2.0856	-0.002001	-0.14108	-0.00013536	959.452408236688	26.311	0.048252	26.3	26.3	26.349	-0.011135	291	49	1.446459	0.028482556	1.4449396	293.8501	0	5.7862854						96	3	3	NaN	NaN	NaN	0.77489	1	7150	7150		12.588	0	1	8089.4			5484	6355	3209	3266	4337	4337					-0.0338806847713613
FLEVERIQ	8	Unmodified	_FLEVERIQ_					0	0	0		ENSG00000147481|ENST00000642720|SNTG1;nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENST00000524004.5_3_8:51571197-51621559:+|nuORF	ENSG00000147481|ENST00000642720|SNTG1	ENSG00000147481|ENST00000642720|SNTG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.567671678	1	1033.56767	1032.5604	1.4502	0.0014989	2.8371	0.0029324	4.2874	0.0044313	1033.573250047645	32.852	0.28956	32.852	32.683	32.973	0	135	145	1.5387528	0.08502269	1.5387528	312.2816	0	17.254913						540	13	2	NaN	NaN	NaN	0.39717	1	9895	9895		36.586	3.1612	1	98597			5485	3600	3210	3267	4338	4338					0.04541742960282136
FLFAGPGP	8	Unmodified	_FLFAGPGP_					0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.21578918565	2	403.215789	804.417025	0.91839	0.00037031	-2.3404	-0.0009437	-1.422	-0.00057339	403.2149400481236	24.598	0.12062	24.598	24.574	24.695	0	1383	46	0.7858409	0.027755678	0.7858409	320.1475	0	11.307526						122	6	3	NaN	NaN	NaN	0.71635	1	4794	4794		18.034	5.7748	1	13403	+		5486	12425	3211	3268	4339	4339					0.006993606398509655
FLFAGPGP	8	Unmodified	_FLFAGPGP_					0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.21578918565	2	403.215789	804.417025	1.1432	0.00046094	-2.0407	-0.00082285	-0.89756	-0.00036191	403.21499809494685	24.623	0.12058	24.61	24.562	24.682	-0.012394	1380	46	0.7876915	0.027755678	0.78617203	320.90143	0	11.307526						119	6	3	NaN	NaN	NaN	0.81214	1	4703	4703		7.5902	0	1	13207	+		5487	12425	3211	3268	4340	4340					0.006993606398509655
FLFAGPGP	8	Unmodified						0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	403.215789	804.417025	0.91839	0.00037031	-2.3404	-0.0009437	-1.422	-0.00057339	403.2149400481236	24.598	0.12062	24.598	24.574	24.695	0	1383	46	0.7858409	0.027755678	0.7858409	320.1475		11.307526	-0.0058203	-0.00012845	-0.00016557	NaN	18.034	122	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13403	+		5488	12425	3211	3268							0.006993606398509655
FLFAGPGP	8	Unmodified						0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	403.215789	804.417025	1.1432	0.00046094	-2.0407	-0.00082285	-0.89756	-0.00036191	403.21499809494685	24.623	0.12058	24.61	24.562	24.682	-0.012394	1380	46	0.7876915	0.027755678	0.78617203	320.90143		11.307526	0.0058203	0.00011325	0.00016557	NaN	18.034	119	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13207	+		5489	12425	3211	3268							0.006993606398509655
FLFGHSMEI	9	Unmodified	_FLFGHSMEI_					0	0	0		nc|ENSG00000089091|Q9NVP4-4|DZANK1	nc|ENSG00000089091|Q9NVP4-4|DZANK1	nc|ENSG00000089091|Q9NVP4-4|DZANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7627775555001	2	540.762778	1079.511	1.3395	0.00072435	1.1074	0.00059886	2.4469	0.0013232	540.7635901545132	34.106	0.2895	34.105	34.056	34.346	-0.0012474	1269	172	0.8560222	0.10482335	0.85450274	347.24683	0	42.52179						784	13	5	NaN	NaN	NaN	0.10956	1	11646	11646		34.439	11.104	1	224480			5490	7915	3212	3269	4341	4341					-0.025572883201675722
FLFGHSMEI	9	Unmodified						0	0	0		nc|ENSG00000089091|Q9NVP4-4|DZANK1	nc|ENSG00000089091|Q9NVP4-4|DZANK1	nc|ENSG00000089091|Q9NVP4-4|DZANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.762778	1079.511	1.4682	0.00079397	0.13987	7.5635E-05	1.6081	0.00086961	540.7631216367733	34.107	0.19304	34.107	34.059	34.252	0	1272	250	0.854179	0.15247321	0.854179	346.49915		61.850983	0.001237	-0.00062367	-0.00016187	NaN	34.439	775	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218800			5491	7915	3212	3269							-0.025572883201675722
FLFHMCLF	8	Unmodified	_FLFHMCLF_					0	0	0			REV__ENST00000371752.5_2_20:47862457-47862751:-|nuORF	REV__ENST00000371752.5_2_20:47862457-47862751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.25353413765	2	529.253534	1056.49252	1.0615	0.00056183	-4.4272	-0.0023431	-3.3657	-0.0017813	529.255394713454	33.021	0.096584	33.021	32.973	33.069	0	1281	64	0.84864825	0.038731933	0.84864825	344.3501	0	15.715973						140	5	3	NaN	NaN	NaN	0.77734	1	10927	10927		12.26	2.2081	1	9559	+		5492	11901	3213	3270	4342	4342					-0.03347121495744432
FLGAPTLW	8	Unmodified	_FLGAPTLW_					0	0	0		nc|ENSG00000265763|Q96MN9-2|ZNF488;ENSG00000265763|ENST00000585316|ZNF488	nc|ENSG00000265763|Q96MN9-2|ZNF488	nc|ENSG00000265763|Q96MN9-2|ZNF488	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.74999614375	2	452.749996	903.485439	2.107	0.00095395	-8.9648	-0.0040588	-6.8578	-0.0031049	452.74575114653396	16.011	0.1198	15.999	15.951	16.07	-0.012611	1359	49	0.8006399	0.02959162	0.7991205	325.577	0	12.033325						90	6	2	NaN	NaN	NaN	0.82332	1	6024	6024		6.0903	2.0366	1	6437.9			5493	6159	3214	3271	4343	4343					0.029836052197083518
FLGAPTLW	8	Unmodified						0	0	0		nc|ENSG00000265763|Q96MN9-2|ZNF488;ENSG00000265763|ENST00000585316|ZNF488	nc|ENSG00000265763|Q96MN9-2|ZNF488	nc|ENSG00000265763|Q96MN9-2|ZNF488	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	452.749996	903.485439	1.2166	0.00055084	-3.6852	-0.0016685	-2.4685	-0.0011176	452.74871646114656	15.99	0.096035	15.99	15.966	16.062	0	1362	37	0.79879075	0.02219367	0.79879075	324.825		9.024994	-0.0043652	0.0021601	-0.00016487	NaN	6.0903	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5043.7			5494	6159	3214	3271							0.029836052197083518
FLGDISRS	8	Unmodified	_FLGDISRS_					0	0	0			REV__ENSG00000163833|ENST00000338040|FBXO40	REV__ENSG00000163833|ENST00000338040|FBXO40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.73761705000004	2	447.737617	893.460681	0.88542	0.00039644	-8.8031	-0.0039415	-7.9177	-0.003545	447.73388378496946	29.449	0.21723	29.449	29.425	29.642	0	1335	43	0.8154261	0.02586186	0.8154261	331.64545	0	10.518372						177	10	2	NaN	NaN	NaN	0.7718	1	5974	5974		13.003	0.95414	1	20706	+		5495	10302	3215	3272	4344	4344					0.009689253463420755
FLGDSANLSIL	11	Unmodified	_FLGDSANLSIL_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C;CDC25C|p.L221*|1|0.04|ENSG00000158402|chr5:138292072-138292072|G/-|frameshift_variant	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3111461338501	2	575.311146	1148.60774	1.8177	0.0010457	-3.3854	-0.0019477	-1.5677	-0.00090192	575.3119603546601	29.908	0.12066	29.908	29.836	29.956	0	1191	61	0.90387505	0.036770105	0.90387505	366.38034	0	14.904541						146	6	3	NaN	NaN	NaN	0.25335	1	14764	14764		27.296	1.4953	1	33995			5496	3987	3216	3273	4345	4345					0.039379774406370416
FLGDSLLLL	9	Unmodified	_FLGDSLLLL_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5870101366003	1	990.58701	989.579734	1.3453	0.0013327	-2.8313	-0.0028047	-1.486	-0.001472	990.5836191421903	37.239	0.26475	37.241	37.169	37.434	0.0022507	177	85	1.5139546	0.04964912	1.5124352	307.42477	0	10.081787						447	12	4	NaN	NaN	NaN	0.12945	1	8042	8042		31.561	1.9627	1	91907			5497	4057	3217	3274	4346	4346					0.08452699251199647
FLGGNILMNL	10	Unmodified	_FLGGNILMNL_					0	0	0		ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.29952720255	2	546.299527	1090.5845	1.7019	0.00092975	-0.60956	-0.000333	1.0923	0.00059675	546.7991523085094	25.346	0.12064	25.346	25.322	25.443	0	1242	82	0.87260187	0.049706757	0.87260187	353.9271	0	20.161041						194	6	2	NaN	NaN	NaN	0.68669	1	12434	12434		8.962	0	1	30621			5498	6805	3218	3275	4347	4347					0.042832601222926314
FLGGNILMNL	10	Unmodified						0	0	0		ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.299527	1090.5845	1.8075	0.00098745	0.81032	0.00044267	2.6178	0.0014301	546.3001116432746	25.394	0.16889	25.382	25.334	25.503	-0.012011	1242	79	0.87260187	0.04786837	0.8710824	353.9271		19.415375	0.017985	0.00032824	-0.00075972	NaN	8.962	226	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27217			5499	6805	3218	3275							0.042832601222926314
FLGPGSPN	8	Unmodified	_FLGPGSPN_					0	0	0			REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|2|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|7	REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|2|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.3937300578	1	788.39373	787.386454	1.0151	0.0008003	5.4393	0.0042883	6.4544	0.0050886	788.3976150699294	32.007	0.21718	32.003	31.93	32.148	-0.0037575	489	94	1.3285799	0.05558896	1.3270605	270.73215	0	11.327698						367	10	3	NaN	NaN	NaN	0.62311	1	4498	4498		23.85	3.295	1	68992	+		5500	8203	3219	3276	4348	4348					-0.015744177452006625
FLGPGSPN	8	Unmodified						0	0	0			REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|2|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|7	REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|2|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	788.39373	787.386454	1.0151	0.0008003	5.4393	0.0042883	6.4544	0.0050886	788.3976150699294	32.007	0.21718	32.003	31.93	32.148	-0.0037575	489	94	1.3285799	0.05558896	1.3270605	270.73215		11.327698	-0.0024265	-9.4656E-06	0.0001365	NaN	23.85	367	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68992	+		5501	8203	3219	3276							-0.015744177452006625
FLGSGYSS	8	Unmodified	_FLGSGYSS_					0	0	0		nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM	nc|ENSG00000182253|O15061-2|SYNM	nc|ENSG00000182253|O15061-2|SYNM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.3726602647001	1	817.37266	816.365384	1.706	0.0013944	6.437	0.0052615	8.1431	0.0066559	817.3780789196587	32.514	0.096489	32.514	32.49	32.587	0	477	49	1.3357477	0.028661966	1.3357477	272.02716	0	5.8370667						119	5	2	NaN	NaN	NaN	0.69631	1	4969	4969		19.285	4.2718	1	11891			5502	5260	3220	3277	4349	4349					-0.05014427844696456
FLGTGLLVL	9	Unmodified	_FLGTGLLVL_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5815308282	1	932.581531	931.574254	1.4333	0.0013366	0.77536	0.00072309	2.2086	0.0020597	932.5824785416223	37.84	0.12026	37.844	37.82	37.94	0.0034218	252	49	1.4695803	0.028437257	1.4680609	298.6692	0	5.779419						143	6	3	NaN	NaN	NaN	0.049695	1	6504	6504		47.04	2.7378	1	12069	+		5503	10357	3221	3278	4350	4350					0.10573020459366944
FLGTGLLVL	9	Unmodified						0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	932.581531	931.574254	1.4333	0.0013366	0.77536	0.00072309	2.2086	0.0020597	932.5824785416223	37.84	0.12026	37.844	37.82	37.94	0.0034218	252	49	1.4695803	0.028437257	1.4680609	298.6692		5.779419	-0.011569	0.00043725	0.0010178	NaN	47.04	143	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12069	+		5504	10357	3221	3278							0.10573020459366944
FLGVGEIDI	9	Unmodified	_FLGVGEIDI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5193245019001	1	962.519325	961.512048	1.2842	0.001236	-2.1901	-0.002108	-0.90594	-0.00087199	962.5188012428201	29.231	0.19308	29.224	29.151	29.344	-0.0077209	222	115	1.4873441	0.06748116	1.4858247	302.1423	0	13.708282						503	9	5	NaN	NaN	NaN	0.078597	1	7223	7223		38.918	2.3314	1	85850	+		5505	10371	3222	3279	4351	4351					0.029752493203773156
FLGWDDDY	8	Unmodified	_FLGWDDDY_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4152533609	1	1030.41525	1029.40798	1.8302	0.0018858	0.19814	0.00020417	2.0283	0.00209	1030.4150902962758	29.594	0.33789	29.594	29.546	29.884	0	225	73	1.4855686	0.042619705	1.4855686	301.5003	0	8.64978						541	15	4	NaN	NaN	NaN	0.11172	1	9737	9737		61.977	39.85	1	93477		+	5506	3621	3223	3280	4352	4352					-0.10555077507137867
FLGWDDDY	8	Unmodified	_FLGWDDDY_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.4152533609	1	1030.41525	1029.40798	1.2433	0.0012812	0.47359	0.000488	1.7169	0.0017692	1030.4158513680452	29.593	0.36193	29.586	29.538	29.9	-0.0070667	225	70	1.4855686	0.040837407	1.4840492	301.5003	0	8.288025						575	16	4	NaN	NaN	NaN	0.0092318	1	9539	9539		114.61	80.909	1	101180		+	5507	3621	3223	3280	4353	4353					-0.10555077507137867
FLGYPITL	8	Unmodified	_FLGYPITL_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000205940|Q58FF8|HSP90AB2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5236815983	1	923.523682	922.516405	1.3534	0.0012499	0.83207	0.00076844	2.1854	0.0020183	923.5242554409638	31.911	0.21723	31.911	31.839	32.056	0	279	79	1.4535767	0.046274424	1.4535767	295.45895	0	9.405914						326	10	3	NaN	NaN	NaN	0.10499	1	6451	6451		63.31	0	1	46300			5508	8021	3224	3281	4354	4354					0.05204758533932363
FLGYPITL	8	Unmodified	_FLGYPITL_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000205940|Q58FF8|HSP90AB2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5236815983	1	923.523682	922.516405	0.41984	0.00038773	0.94193	0.00086989	1.3618	0.0012576	923.5244192896488	31.91	0.21716	31.906	31.834	32.051	-0.0037613	279	64	1.4535767	0.03735757	1.4520572	295.45895	0	7.593445						288	10	3	NaN	NaN	NaN	0.10499	1	6327	6327		63.31	0	1	44002			5509	8021	3224	3281	4355	4355					0.05204758533932363
FLHVAGAS	8	Unmodified	_FLHVAGAS_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-2|SETD4	REV__nc|ENSG00000185917|Q9NVD3-2|SETD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.4253645372	1	801.425365	800.418088	1.868	0.0014971	0.45232	0.0003625	2.3203	0.0018596	801.4254826011511	24.26	0.048279	24.248	24.248	24.296	-0.012749	510	61	1.316029	0.035873532	1.3145095	268.09976	0	7.3081055						73	3	2	NaN	NaN	NaN	0.84692	1	4659	4659		1.4396	0	1	6236.9	+		5510	12386	3225	3282	4356	4356					0.009895750087594024
FLHWWYDK	8	Unmodified	_FLHWWYDK_					0	0	0		nc|ENSG00000249139|O95925-2|EPPIN;ENSG00000101448|ENST00000354280|EPPIN;nc|ENSG00000249139|O95925-3|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.79018393675	2	597.790184	1193.56581	1.5692	0.00093805	2.0467	0.0012235	3.6159	0.0021615	597.7902306208877	26.456	0.12064	26.456	26.456	26.577	0	984	136	1.03022	0.08215946	1.03022	417.4069	0	33.287994						234	6	2	NaN	NaN	NaN	0.84876	1	16256	16256		0.39566	0	1	43724			5511	1330	3226	3283	4357	4357					-0.023225334572543943
FLIFCREIT	9	Unmodified	_FLIFCREIT_					0	0	0			REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.30735223465	2	571.307352	1140.60015	0.65977	0.00037693	-10.282	-0.0058742	-9.6223	-0.0054973	571.3013774964194	32.417	0.12066	32.414	32.341	32.462	-0.0031052	1182	58	0.9093879	0.034922183	0.90786844	368.6457	0	14.156677						142	6	3	NaN	NaN	NaN	0.31471	1	14007	14007		17.97	4.2326	1	13315	+		5512	11763	3227	3284	4358	4358					0.03547546639333632
FLIFCREIT	9	Unmodified						0	0	0			REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.307352	1140.60015	1.3373	0.00076401	-11.998	-0.0068545	-10.661	-0.0060905	571.3007061040548	32.418	0.12064	32.418	32.37	32.49	0	1188	55	0.90571284	0.033082366	0.90571284	367.1559		13.410858	0.0021038	-0.00076709	-0.0010778	NaN	17.97	144	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13023	+		5513	11763	3227	3284							0.03547546639333632
FLIFCREIT	9	Unmodified						0	0	0			REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	REV__ENST00000336314.8_2_5:154194204-154194450:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.307352	1140.60015	0.65977	0.00037693	-10.282	-0.0058742	-9.6223	-0.0054973	571.3013774964194	32.417	0.12066	32.414	32.341	32.462	-0.0031052	1182	58	0.9093879	0.034922183	0.90786844	368.6457		14.156677	-0.0021038	0.0011934	0.0010778	NaN	17.97	142	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13315	+		5514	11763	3227	3284							0.03547546639333632
FLKDDPELL	9	Unmodified	_FLKDDPELL_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2949647534	2	545.294965	1088.57538	1.1279	0.00061502	-2.5131	-0.0013704	-1.3853	-0.00075537	545.2934282447817	28.483	0.14477	28.475	28.427	28.572	-0.0083504	1236	61	0.876284	0.036821842	0.8747646	355.42877	0	14.935272						224	7	2	NaN	NaN	NaN	0.33629	1	12027	12027		16.584	1.4088	1	29747	+		5515	9925	3228	3285	4359	4359					0.0346319003760982
FLKDDPELL	9	Unmodified						0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.294965	1088.57538	1.5007	0.00081831	-2.5713	-0.0014021	-1.0706	-0.00058378	545.7948969256448	28.436	0.16897	28.436	28.412	28.581	0	1239	70	0.87444305	0.04234737	0.87444305	354.68207		17.176483	-0.019623	-2.7815E-05	-0.00016078	NaN	16.584	230	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23387	+		5516	9925	3228	3285							0.0346319003760982
FLKDDPELL	9	Unmodified						0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.294965	1088.57538	1.1279	0.00061502	-2.5131	-0.0013704	-1.3853	-0.00075537	545.2934282447817	28.483	0.14477	28.475	28.427	28.572	-0.0083504	1236	61	0.876284	0.036821842	0.8747646	355.42877		14.935272	0.019623	3.5572E-05	0.00016078	NaN	16.584	224	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29747	+		5517	9925	3228	3285							0.0346319003760982
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852002	1	692.372601	691.365324	0.8712	0.00060319	4.1575	0.0028786	5.0287	0.0034818	692.3756558510969	33.335	0.19307	33.335	33.262	33.456	0	747	88	1.1737292	0.052449226	1.1737292	239.74577	0	10.713287						199	9	2	NaN	NaN	NaN	0.84887	1	3056	3056		0.32989	0.32989	1	22373			5518	2496	3229	3286	4360	4360					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852002	1	692.372601	691.365324	0.77097	0.0005338	8.2388	0.0057043	9.0097	0.0062381	692.3784404975987	38.42	0.31238	38.42	38.348	38.66	0	654	67	1.2297117	0.039676428	1.2297117	251.18073	0	8.104294						393	14	3	NaN	NaN	NaN	0.84887	1	3061	3061		0.32989	0.32989	1	62598			5519	2496	3229	3286	4361	4361					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852002	1	692.372601	691.365324	1.1469	0.00079405	8.1144	0.0056182	9.2613	0.0064122	692.3782919016923	30.777	0.19305	30.777	30.728	30.922	0	732	70	1.1827712	0.041593313	1.1827712	241.59267	0	8.495819						338	9	4	NaN	NaN	NaN	0.84692	1	3063	3063		1.4396	1.0439	1	52868			5520	2496	3229	3286	4362	4362					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.83662	0.00057926	7.7693	0.0053792	8.6059	0.0059585	692.3783795895318	32.682	0.16896	32.679	32.607	32.776	-0.0031052	732	79	1.1827712	0.047020912	1.1812518	241.59268	0	9.604477						278	8	4	NaN	NaN	NaN	0.84876	1	2991	2991		0.39566	0.39566	1	43142			5521	2496	3229	3286	4363	4363					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.92027	0.00063717	7.8318	0.0054225	8.752	0.0060597	692.378073547461	40.607	0.26409	40.613	40.541	40.805	0.0067596	660	115	1.2261056	0.06859803	1.2245861	250.44412	0	14.01181						561	12	3	NaN	NaN	NaN	0.84887	1	2992	2992		0.32989	0.32989	1	71029			5522	2496	3229	3286	4364	4364					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	1.0264	0.00071065	8.1552	0.0056464	9.1816	0.0063571	692.378386883959	35.312	0.28943	35.312	35.191	35.48	-4.5776E-05	735	103	1.1809633	0.061495543	1.1794438	241.22337	0	12.561066						695	13	4	NaN	NaN	NaN	0.84887	1	2997	2997		0.32989	0	1	248110			5523	2496	3229	3286	4365	4365					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.83427	0.00057763	8.3863	0.0058064	9.2206	0.0063841	692.3788006917262	35.673	0.21706	35.674	35.529	35.746	0.00053024	738	88	1.179155	0.05245483	1.1776356	240.85402	0	10.7144165						479	10	4	NaN	NaN	NaN	0.84887	1	2998	2998		0.32989	0.32989	1	144230			5524	2496	3229	3286	4366	4366					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.98003	0.00067854	8.3898	0.0058089	9.3698	0.0064874	692.3786882792001	33.913	0.26548	33.911	33.839	34.105	-0.0012474	735	100	1.1809633	0.059696436	1.1794438	241.22337	0	12.193573						639	12	4	NaN	NaN	NaN	0.84887	1	3000	3000		0.32989	0	1	162980			5525	2496	3229	3286	4367	4367					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	1.0586	0.00073294	8.6187	0.0059674	9.6773	0.0067003	692.3789671979264	31.982	0.36197	31.979	31.906	32.268	-0.0037594	768	196	1.1610622	0.11768496	1.1595428	237.1584	0	24.038315						1378	16	4	NaN	NaN	NaN	0.84727	1	3002	3002		1.2418	0.91196	1	378150			5526	2496	3229	3286	4368	4368					0.007296169459550583
FLKGGGGG	8	Unmodified	_FLKGGGGG_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.97584	0.00067564	8.8535	0.0061299	9.8293	0.0068056	692.3790527706805	31.813	0.24135	31.809	31.64	31.881	-0.0044155	717	211	1.1918083	0.12679887	1.1902889	243.4386	0	25.899918						770	11	4	NaN	NaN	NaN	0.84692	1	3003	3003		1.4396	1.0439	1	383820			5527	2496	3229	3286	4369	4369					0.007296169459550583
FLKGGGGG	8	Unmodified						0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.3435	0.0009302	7.3897	0.0051164	8.7332	0.0060466	692.377874996087	32.707	0.19308	32.707	32.587	32.78	0	732	85	1.1827712	0.05063796	1.1827712	241.59268		10.3433075	0.014162	-0.00012672	0.00075972	NaN	0.39566	270	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45577			5528	2496	3229	3286							0.007296169459550583
FLKGGGGG	8	Unmodified						0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.5791	0.0010933	8.5934	0.0059498	10.172	0.0070432	692.3787474241815	31.983	0.33783	31.983	31.935	32.273	0	771	196	1.1592519	0.11771023	1.1592519	236.78862		24.043457	0.087209	-5.3658E-05	-0.015518	NaN	1.4396	1107	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345370			5529	2496	3229	3286							0.007296169459550583
FLKGGGGG	8	Unmodified						0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.1056	0.00076552	9.1726	0.0063509	10.278	0.0071164	692.3791951647738	35.337	0.28949	35.337	35.192	35.482	0	738	103	1.179155	0.061521888	1.179155	240.85402		12.566452	-0.16836	0.00018244	0.00075972	NaN	0.32989	618	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238070			5530	2496	3229	3286							0.007296169459550583
FLKGGGGG	8	Unmodified						0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	692.372601	691.365324	0.99192	0.00068678	8.1012	0.005609	9.0931	0.0062958	692.3785852781683	30.776	0.19305	30.77	30.698	30.891	-0.0057545	732	85	1.1827712	0.05063796	1.1812518	241.59267		10.3433075	-0.0034277	-4.7883E-06	-0.00075972	NaN	1.4396	357	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54861			5531	2496	3229	3286							0.007296169459550583
FLLAALFEW	9	Unmodified	_FLLAALFEW_					0	0	0		ENST00000552885.2_1_12:80328990-80329323:+|nuORF	ENST00000552885.2_1_12:80328990-80329323:+|nuORF	ENST00000552885.2_1_12:80328990-80329323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.3051355092	2	555.305136	1108.59572	1.0375	0.00057611	-6.1749	-0.003429	-5.1375	-0.0028529	555.3027578288807	24.188	0.072433	24.188	24.14	24.213	0	1212	61	0.8910048	0.036778092	0.8910048	361.31808	0	14.914154						108	4	3	NaN	NaN	NaN	0.67818	1	13234	13234		1.072	0	1	11829			5532	7557	3230	3287	4370	4370					0.04576405488069213
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.8024256447501	2	522.802426	1043.5903	1.3007	0.00068002	-1.845	-0.00096455	-0.54424	-0.00028453	522.80095849558	34.853	0.19289	34.853	34.804	34.997	-0.0006485	1236	91	0.876284	0.055274546	0.8747646	355.6202	0	22.431915						222	9	4	NaN	NaN	NaN	0.020004	1	10165	10165		71.993	30.533	1	54515			5533	4270	3231	3288	4371	4371					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.5975748229	1	1044.59757	1043.5903	1.7934	0.0018734	-1.3715	-0.0014327	0.42193	0.00044075	1044.5958530624275	34.853	0.33767	34.853	34.804	35.142	-0.0006485	105	130	1.5564433	0.076033115	1.5549239	315.8278	0	15.428375						933	15	4	NaN	NaN	NaN	0.002833	1	10166	10166		108.51	6.9554	1	303110			5534	4270	3231	3288	4372	4372					0.07024681905613761
FLLALEPEL	9	Unmodified						0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1044.59757	1043.5903	1.7737	0.0018528	-0.97451	-0.001018	0.79918	0.00083482	1044.5963340585495	34.855	0.16879	34.855	34.806	34.975	0	111	163	1.5529068	0.095549226	1.5529068	315.11014		19.38852	0.0010922	0.00014937	-0.0010086	NaN	108.51	785	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268700			5535	4270	3231	3288							0.07024681905613761
FLLALEPEL	9	Unmodified						0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.802426	1043.5903	1.152	0.00060228	-1.2927	-0.00067585	-0.14071	-7.3562E-05	522.8014663308593	34.855	0.16879	34.855	34.806	34.975	0	1239	49	0.87444305	0.02945429	0.87444305	354.87308		11.953339	0.0010922	0.00028914	-0.00016078	NaN	71.993	223	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62559			5536	4270	3231	3288							0.07024681905613761
FLLGESTS	8	Unmodified	_FLLGESTS_					0	0	0		ENST00000399744.7_2_22:18560967-18561111:+|nuORF	ENST00000399744.7_2_22:18560967-18561111:+|nuORF	ENST00000399744.7_2_22:18560967-18561111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4301751436	1	853.430175	852.422899	2.1234	0.0018122	1.1581	0.00098832	3.2815	0.0028005	853.4282884442107	30.053	0.048307	30.053	30.029	30.077	0	438	55	1.359022	0.032203674	1.359022	276.5732	0	6.5537415						64	3	2	NaN	NaN	NaN	0.80071	1	5417	5417		9.1232	0	1	4693			5537	6825	3232	3289	4373	4373					-0.00921585639150635
FLLPAASP	8	Unmodified	_FLLPAASP_					0	0	0			REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF	REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.4661667194	1	815.466167	814.45889	1.0709	0.00087331	5.1385	0.0041902	6.2094	0.0050636	815.4697837695337	38.756	0.19221	38.756	38.684	38.876	0	393	61	1.3858368	0.03572464	1.3858368	282.23883	0	7.2756653						241	9	3	NaN	NaN	NaN	0.83849	1	4945	4945		4.0537	0	1	20904	+		5538	11739	3233	3290	4374	4374					0.044239163283691596
FLLPGNGI	8	Unmodified	_FLLPGNGI_					0	0	0		ENST00000538503.5_1_12:121881458-121882696:-|nuORF	ENST00000538503.5_1_12:121881458-121882696:-|nuORF	ENST00000538503.5_1_12:121881458-121882696:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.74217111165007	2	415.742171	829.469789	2.0279	0.00084308	3.1802	0.0013221	5.2081	0.0021652	415.7434015993431	25.926	0.048271	25.926	25.901	25.95	0	1389	37	0.7821392	0.022212982	0.7821392	318.4782	0	9.044861						54	3	2	NaN	NaN	NaN	0.81807	1	5130	5130		6.794	0	1	4982.7			5539	7486	3234	3291	4375	4375					0.048233187026767155
FLLRNKNHI	9	Unmodified	_FLLRNKNHI_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8432821397502	2	577.843282	1153.67201	2.1813	0.0012604	-8.1984	-0.0047374	-6.0171	-0.0034769	577.8375097845087	23.151	0.072403	23.138	23.114	23.186	-0.013294	1113	28	0.9515937	0.016495764	0.95007426	385.70276	0	6.686096						56	4	2	NaN	NaN	NaN	0.66615	1	14452	14452		3.9685	2.8965	1	3870			5540	7973	3235	3292	4376	4376					0.10132222108086353
FLLRNKNHI	9	Unmodified						0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.843282	1153.67201	2.2422	0.0012956	-7.9457	-0.0045914	-5.7035	-0.0032958	577.8368268884218	23.007	0.048088	23.007	22.983	23.031	0	1116	28	0.94976085	0.016497552	0.94976085	384.95987		6.6868286	-0.065257	0.00018112	-0.00015671	NaN	3.9685	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3037.4			5541	7973	3235	3292							0.10132222108086353
FLMGTGSILM	10	Unmodified	_FLMGTGSILM_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2746635102501	2	535.274664	1068.53477	1.9482	0.0010428	-10.925	-0.005848	-8.9771	-0.0048052	535.7702872630549	15.966	0.095871	15.966	15.894	15.99	0	1266	79	0.85786515	0.047946036	0.85786515	348.03952	0	19.451904						135	5	3	NaN	NaN	NaN	0.41241	1	11492	11492		17.799	0	1	12102			5542	8019	3236	3293	4377	4377					0.0032480912200298917
FLNGLEILL	9	Unmodified	_FLNGLEILL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.6135592381	1	1031.61356	1030.60628	1.6413	0.0016932	1.3674	0.0014106	3.0087	0.0031038	1031.6142220200582	37.792	0.12027	37.795	37.771	37.891	0.0028229	111	40	1.5529068	0.02298665	1.5513873	315.16193	0	4.6651306						78	6	2	NaN	NaN	NaN	0.10363	1	9612	9612		35.296	5.6982	1	5417.5			5543	1858	3237	3294	4378	4378					0.09220388142512093
FLNGLEILL	9	Unmodified						0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1031.61356	1030.60628	0.96868	0.0009993	1.4326	0.0014778	2.4012	0.0024771	1031.615319714281	37.771	0.096191	37.771	37.747	37.843	0	111	40	1.5529068	0.022989154	1.5529068	315.16193		4.6656494	-0.012135	3.5055E-05	0.00075972	NaN	35.296	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5475.4			5544	1858	3237	3294							0.09220388142512093
FLPCTNDK	8	Unmodified	_FLPCTNDK_					0	0	0		ENST00000560524.1_1_15:29526351-29527221:-|nuORF;nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	ENST00000560524.1_1_15:29526351-29527221:-|nuORF	ENST00000560524.1_1_15:29526351-29527221:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.22602790844996	2	469.226028	936.437503	0.94816	0.0004449	-3.958	-0.0018572	-3.0098	-0.0014123	469.22472877977737	27.277	0.21718	27.277	27.205	27.422	0	1341	55	0.8117308	0.033250928	0.8117308	329.9131	0	13.514252						125	10	2	NaN	NaN	NaN	0.84207	1	6750	6750		3.5732	0	1	11754			5545	3403	3238	3295	4379	4379					-0.03325836762655854
FLPFPLPLF	9	Unmodified	_FLPFPLPLF_					0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.82042143265	2	545.820421	1089.62629	1.4955	0.00081626	-1.5131	-0.00082589	-0.017645	-9.6313E-06	545.8196464650231	47.3	0.19164	47.3	47.204	47.396	0	1230	55	0.8799654	0.03313607	0.8799654	356.9177	0	13.4401245						217	9	3	NaN	NaN	NaN	0.010172	1	12389	12389		92.036	26.359	1	16207			5546	3202	3239	3296	4380	4380					0.08506183873123518
FLPFPLPLF	9	Unmodified	_FLPFPLPLF_					0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.6335663987	1	1090.63357	1089.62629	2.2326	0.0024349	-1.0786	-0.0011764	1.154	0.0012586	1090.6321999848967	47.3	0.071869	47.3	47.228	47.3	0	57	37	1.5847093	0.021181464	1.5847093	321.38608	0	4.2957153						58	4	2	NaN	NaN	NaN	0.0029866	1	12390	12390		108.05	29.971	1	4731.3			5547	3202	3239	3296	4381	4381					0.08506183873123518
FLPFPLPLF	9	Unmodified	_FLPFPLPLF_					0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.6335663987	1	1090.63357	1089.62629	2.6257	0.0028637	2.6905	0.0029343	5.3162	0.005798	1090.63685626967	47.348	0.047913	47.348	47.324	47.372	0	57	37	1.5847093	0.021181464	1.5847093	321.38608	0	4.295685						26	3	2	NaN	NaN	NaN	0.010172	1	12391	12391		92.036	26.359	1	1690.1			5548	3202	3239	3296	4382	4382					0.08506183873123518
FLPFPLPLF	9	Unmodified	_FLPFPLPLF_					0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.6335663987	1	1090.63357	1089.62629	-0.00047555	-5.1865E-07	0.016245	1.7717E-05	0.015769	1.7198E-05	1090.6334280714466	47.251	0.071877	47.258	47.234	47.306	0.007412	54	40	1.5864743	0.022945404	1.5849549	321.74405	0	4.6534424						60	4	2	NaN	NaN	NaN	0.015198	1	12086	12086		78.076	23.497	1	4463.9			5549	3202	3239	3296	4383	4383					0.08506183873123518
FLPFPLPLF	9	Unmodified						0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.820421	1089.62629	-0.32251	-0.00017603	-0.69028	-0.00037677	-1.0128	-0.0005528	545.8197642825111	47.251	0.16771	47.258	47.21	47.378	0.007412	1227	61	0.88180584	0.036821842	0.8802864	357.66415		14.935089	-0.020952	0.00042601	0.00016048	NaN	92.036	252	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23333			5550	3202	3239	3296							0.08506183873123518
FLPLGPPPS	9	Unmodified	_FLPLGPPPS_					0	0	0		ENST00000320868.9_1_16:227411-227501:+|nuORF	ENST00000320868.9_1_16:227411-227501:+|nuORF	ENST00000320868.9_1_16:227411-227501:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5189305714001	1	924.518931	923.511654	1.8635	0.0017229	-0.24197	-0.00022371	1.6216	0.0014992	924.5200470007861	34.493	0.04829	34.493	34.493	34.541	0	306	55	1.4375578	0.032053113	1.4375578	292.19827	0	6.5151367						80	3	2	NaN	NaN	NaN	0.47587	1	6480	6480		10.605	2.3147	1	5811.6			5551	6482	3240	3297	4384	4384					0.046838743911848724
FLPLPFPLF	9	Unmodified	_FLPLPFPLF_					0	0	0			REV__ENST00000544675.1_1_12:4777624-4791467:+|nuORF	REV__ENST00000544675.1_1_12:4777624-4791467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.82042143265	2	545.820421	1089.62629	-0.32251	-0.00017603	-0.69028	-0.00037677	-1.0128	-0.0005528	545.8197642825111	47.251	0.16771	47.258	47.21	47.378	0.007412	1227	61	0.88180584	0.036821842	0.8802864	357.66415	0	14.935089						252	8	3	NaN	NaN	NaN	0.033463	1	12085	12085		54.579	0	1	23333	+		5552	9755	3241	3298	4385	4385					0.08506183873123518
FLPVLAELA	9	Unmodified	_FLPVLAELA_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5764454503001	1	972.576445	971.569169	1.1622	0.0011303	-3.1189	-0.0030334	-1.9567	-0.0019031	972.5719318364306	33.72	0.048267	33.718	33.694	33.742	-0.0018463	279	40	1.4535767	0.023128629	1.4520572	295.23953	0	4.6977234						59	3	2	NaN	NaN	NaN	0.45297	1	7513	7513		11.548	0.94349	1	5008.3			5553	3984	3242	3299	4386	4386					0.08224716596748749
FLPVLAELA	9	Unmodified						0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	972.576445	971.569169	1.1594	0.0011276	0.3741	0.00036385	1.5335	0.0014915	972.577190161478	33.721	0.048286	33.721	33.697	33.745	0	285	43	1.4500183	0.02490902	1.4500183	294.51675		5.059326	0.0015528	0.0016718	-0.0010195	NaN	11.548	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4233.9			5554	3984	3242	3299							0.08224716596748749
FLPYEIPFL	9	Unmodified	_FLPYEIPFL_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|196|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|196|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.618310265	1	1138.61831	1137.61103	1.683	0.0019162	0.16309	0.0001857	1.846	0.0021019	1138.6181835492282	40.561	0.12015	40.561	40.488	40.609	0	54	49	1.5864743	0.028241992	1.5864743	321.57422	0	5.724579						97	6	2	NaN	NaN	NaN	0.013314	1	14377	14377		82.858	14.75	1	7625.4	+		5555	13036	3243	3300	4387	4387					0.04773272285274288
FLQAGGKG	8	Unmodified	_FLQAGGKG_					0	0	0		ENST00000333082.7_2_20:1145765-1146050:+|nuORF	ENST00000333082.7_2_20:1145765-1146050:+|nuORF	ENST00000333082.7_2_20:1145765-1146050:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.4253645372002	1	777.425365	776.418088	1.3194	0.0010257	5.3779	0.0041809	6.6973	0.0052067	777.42936413738	34.009	0.28967	34.008	33.936	34.225	-0.0012474	492	88	1.3267875	0.052008152	1.325268	270.43234	0	10.600586						444	13	4	NaN	NaN	NaN	0.67593	1	4372	4372		20.555	0	1	99655			5556	6511	3244	3301	4388	4388					0.020935750087687666
FLQDEIIDK	9	Unmodified	_FLQDEIIDK_					0	0	0		nc|ENSG00000112335|O60493-2|SNX3;nc|ENSG00000112335|O60493-4|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7978715831	2	560.797872	1119.58119	1.3827	0.00077539	-8.1115	-0.0045489	-6.7289	-0.0037735	561.2952873465495	34.227	0.096531	34.225	34.177	34.274	-0.0012474	1215	37	0.8891654	0.022073984	0.88764596	360.52875	0	8.950317						79	5	3	NaN	NaN	NaN	0.44082	1	13257	13257		12.049	3.0867	1	6123.2			5557	7926	3245	3302	4389	4389					0.02618288549274439
FLQLFVCR	8	Unmodified	_FLQLFVCR_					0	0	0			REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2836801731	2	513.28368	1024.55281	2.2307	0.001145	4.9466	0.002539	7.1773	0.003684	513.2860894508443	22.959	0.14437	22.959	22.935	23.079	0	1293	55	0.84127116	0.03319341	0.84127116	341.4936	0	13.47406						92	7	2	NaN	NaN	NaN	0.62311	1	9564	9564		23.85	1.7241	1	9922.7	+		5558	12497	3246	3303	4390	4390					0.041513121590014634
FLQLFVCR	8	Unmodified						0	0	0			REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.28368	1024.55281	2.2307	0.001145	4.9466	0.002539	7.1773	0.003684	513.2860894508443	22.959	0.14437	22.959	22.935	23.079	0	1293	55	0.84127116	0.03319341	0.84127116	341.4936		13.47406	-0.016979	0.0012871	-0.00016257	NaN	23.85	92	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9922.7	+		5559	12497	3246	3303							0.041513121590014634
FLQLFVCR	8	Unmodified						0	0	0			REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	REV__ENST00000496112.5_1_7:44240682-44244226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.28368	1024.55281	1.4109	0.00072419	1.0319	0.00052965	2.4428	0.0012538	513.2835334151623	23.007	0.096354	22.993	22.969	23.065	-0.01354	1290	61	0.84311575	0.036881566	0.8415963	342.24237		14.971191	0.016979	-0.0027317	0.00016257	NaN	23.85	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11453	+		5560	12497	3246	3303							0.041513121590014634
FLQNCRAPGGF	11	Unmodified	_FLQNCRAPGGF_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2953074919	2	605.295307	1208.57606	0.31354	0.00018979	7.6101	0.0046064	7.9236	0.0047961	605.2993889530685	33.768	0.19306	33.766	33.718	33.911	-0.0018463	1143	79	0.9332562	0.04772383	0.93173677	378.06705	0	19.33316						240	9	3	NaN	NaN	NaN	0.72685	1	16020	16020		5.6942	0.50528	1	21014			5561	3360	3247	3304	4391	4391					-0.01988293794352103
FLQQMQEFR	9	Unmodified	_FLQQMQEFR_					0	0	0		ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.8029653485	2	613.802965	1225.59138	0.72721	0.00044636	0.2599	0.00015952	0.98711	0.00060589	613.8029959754919	14.669	0.14408	14.669	14.597	14.741	0	1161	43	0.9222442	0.025702953	0.9222442	373.5475	0	10.410797						129	7	3	NaN	NaN	NaN	0.19268	1	17124	17124		25.801	2.6834	1	9151.4			5562	5913	3248	3305	4392	4392					-0.012394269971309768
FLQSQFPDDA	10	Unmodified	_FLQSQFPDDA_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2694782844001	2	584.269478	1166.5244	1.1853	0.00069255	-0.69897	-0.00040839	0.48635	0.00028416	584.2703172901914	30.028	0.09656	30.021	29.973	30.07	-0.0064106	1197	55	0.9001988	0.03309667	0.8986794	364.82373	0	13.413116						129	5	3	NaN	NaN	NaN	0.62764	1	14815	14815		13.003	0	1	10947			5563	5126	3249	3306	4393	4393					-0.052197590072410094
FLRFMACLL	9	Unmodified	_FLRFMACLL_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B;DENND4B|p.G568R|1|0.04|ENSG00000198837|chr1:153939706-153939706|C/T|missense_variant;DENND4B|p.G568E|1|0.04|ENSG00000198837|chr1:153939705-153939705|C/T|missense_variant	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3010156465001	2	557.301016	1112.58748	1.931	0.0010762	4.5697	0.0025467	6.5008	0.0036229	557.3030957437879	23.441	0.072416	23.427	23.403	23.476	-0.013294	1242	70	0.87260187	0.042324543	0.8710824	353.83975	0	17.162567						125	4	3	NaN	NaN	NaN	0.66529	1	13008	13008		2.1763	0.2517	1	10097			5564	5818	3250	3307	4394	4394					0.035688119754695435
FLRSCPDLL	9	Unmodified	_FLRSCPDLL_					0	0	0		ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.28387713835	2	532.283877	1062.5532	1.1442	0.00060902	-4.861	-0.0025875	-3.7169	-0.0019784	532.2807645564724	24.84	0.24129	24.827	24.755	24.996	-0.012392	1287	124	0.8449601	0.07555419	0.84344065	342.82843	0	30.654816						814	11	3	NaN	NaN	NaN	0.25448	1	10983	10983		21.835	0	1	169700			5565	5294	3251	3308	4395	4395					0.024426870882052754
FLRSCPDLL	9	Unmodified						0	0	0		ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.283877	1062.5532	2.0172	0.0010737	-6.9473	-0.0036979	-4.9301	-0.0026242	532.2800564736539	24.816	0.26546	24.816	24.743	25.009	0	1290	121	0.84311575	0.0737074	0.84311575	342.0801		29.905548	-0.0057878	-0.00069519	-0.00016247	NaN	21.835	871	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181910			5566	5294	3251	3308							0.024426870882052754
FLSENEQP	8	Unmodified	_FLSENEQP_					0	0	0			REV__WASL|p.K165Efs*7|2|0.11|ENSG00000106299|chr7:123696715-123696716|-/AACTTGTTAGAAAATTTTC|frameshift_variant	REV__WASL|p.K165Efs*7|2|0.11|ENSG00000106299|chr7:123696715-123696716|-/AACTTGTTAGAAAATTTTC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.22453946449997	2	482.224539	962.434526	2.4368	0.0011751	-3.4942	-0.001685	-1.0574	-0.00050992	482.22281474963034	26.07	0.26548	26.07	26.022	26.288	0	1323	103	0.8228144	0.062841356	0.8228144	334.28714	0	25.530731						626	12	4	NaN	NaN	NaN	0.067757	1	7392	7392		73.133	11.862	1	151400	+		5567	8985	3252	3309	4396	4396					-0.048193886158060195
FLSEVLTIF	9	Unmodified	_FLSEVLTIF_					0	0	0		tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	tr|U7T2G3|U7T2G3_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00556PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5975748228998	1	1068.59757	1067.5903	1.4259	0.0015237	0.11275	0.00012049	1.5387	0.0016442	1068.5975905210187	43.201	0.19167	43.201	43.153	43.345	0	75	58	1.5741152	0.033560514	1.5741152	319.31998	0	6.807953						219	9	2	NaN	NaN	NaN	0.032417	1	11460	11460		55.947	3.1891	1	22356			5568	13958	3253	3310	4397	4397					0.05920681905604397
FLSNHFFILFS	11	Unmodified	_FLSNHFFILFS_					0	0	0		nc|ENSG00000150477|Q86T90-3|KIAA1328	nc|ENSG00000150477|Q86T90-3|KIAA1328	nc|ENSG00000150477|Q86T90-3|KIAA1328	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.3584306774501	2	686.358431	1370.70231	1.9159	0.001315	2.5846	0.001774	4.5005	0.003089	686.8620079508231	25.274	0.36188	25.262	25.141	25.503	-0.012011	1050	67	0.9900381	0.040242553	0.9885187	400.5337	0	16.2807						368	16	2	NaN	NaN	NaN	0.69801	1	18877	18877		7.5876	3.6595	1	66053			5569	7959	3254	3311	4398	4398					0.03178535982601716
FLSNHFFILFS	11	Unmodified						0	0	0		nc|ENSG00000150477|Q86T90-3|KIAA1328	nc|ENSG00000150477|Q86T90-3|KIAA1328	nc|ENSG00000150477|Q86T90-3|KIAA1328	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	686.358431	1370.70231	2.1568	0.0014803	0.19912	0.00013667	2.3559	0.001617	686.3580716050429	25.057	0.24128	25.057	24.985	25.226	0	1050	91	0.9900381	0.05489403	0.9900381	400.5337		22.20813	-0.10245	-0.00196	0.00075972	NaN	7.5876	482	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79570			5570	7959	3254	3311							0.03178535982601716
FLSNTAELI	9	Unmodified	_FLSNTAELI_					0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.27403234605	2	504.274032	1006.53351	0.92655	0.00046724	0.18839	9.5003E-05	1.1149	0.00056224	504.2741691071096	29.473	0.096514	29.466	29.442	29.538	-0.0070667	1263	52	0.85970795	0.03132391	0.8581885	349.06036	0	12.718201						148	5	3	NaN	NaN	NaN	0.25448	1	8673	8673		21.835	2.7167	1	26713	+		5571	10989	3255	3312	4399	4399					0.030506343490856125
FLSNTAELI	9	Unmodified						0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.274032	1006.53351	0.92655	0.00046724	0.18839	9.5003E-05	1.1149	0.00056224	504.2741691071096	29.473	0.096514	29.466	29.442	29.538	-0.0070667	1263	52	0.85970795	0.03132391	0.8581885	349.06036		12.718201	-0.0039165	0.00072176	-0.00075972	NaN	21.835	148	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26713	+		5572	10989	3255	3312							0.030506343490856125
FLSPLLFCL	9	Unmodified	_FLSPLLFCL_					0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5849016466	1	1052.5849	1051.57763	1.5186	0.0015985	0.87916	0.0009254	2.3978	0.0025238	1052.5862196858773	40.2	0.096146	40.2	40.128	40.224	0	102	37	1.5582114	0.021215081	1.5582114	316.15518	0	4.304474						68	5	2	NaN	NaN	NaN	0.24994	1	10708	10708		22.126	0	1	3713.6	+		5573	8854	3256	3313	4400	4400					0.05389947241724258
FLSPLLFCL	9	Unmodified						0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.5849	1051.57763	1.5186	0.0015985	0.87916	0.0009254	2.3978	0.0025238	1052.5862196858773	40.2	0.096146	40.2	40.128	40.224	0	102	37	1.5582114	0.021215081	1.5582114	316.15518		4.304474	0.021914	0.0001657	0.00075972	NaN	22.126	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3713.6	+		5574	8854	3256	3313							0.05389947241724258
FLSSAGAA	8	Unmodified	_FLSSAGAA_					0	0	0		ENST00000568394.1_1_16:1031432-1031561:-|nuORF	ENST00000568394.1_1_16:1031432-1031561:-|nuORF	ENST00000568394.1_1_16:1031432-1031561:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3671809563	1	723.367181	722.359904	1.14	0.00082461	5.4393	0.0039346	6.5793	0.0047592	723.3716311769548	28.556	0.14474	28.547	28.499	28.644	-0.0083504	612	46	1.2549332	0.027007222	1.2534138	256.11887	0	5.511917						133	7	2	NaN	NaN	NaN	0.72043	1	3559	3559		17.78	0	1	10691			5575	7637	3257	3314	4401	4401					-0.012381066365264815
FLSSFIDPK	9	Unmodified	_FLSSFIDPK_					0	0	0		CON__P81644	CON__P81644	CON__P81644	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2844000671	2	527.2844	1052.55425	1.4057	0.00074119	8.57	0.0045188	9.9757	0.00526	527.2886998919511	29.184	0.16892	29.184	29.136	29.305	0	1242	79	0.87260187	0.04789424	0.87260187	354.08655	0	19.434631						225	8	2	NaN	NaN	NaN	0.35794	1	10749	10749		15.463	4.2923	1	51465		+	5576	203	3258	3315	4402	4402					0.030072247287534992
FLSSFIDPK	9	Unmodified						0	0	0		CON__P81644	CON__P81644	CON__P81644	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.2844	1052.55425	0.90766	0.0004786	8.2885	0.0043704	9.1961	0.004849	527.2883521020003	29.183	0.16895	29.175	29.127	29.296	-0.0077209	1239	85	0.87444305	0.051578403	0.8729236	354.83368		20.929596	-0.0042565	-0.00012345	0.00016088	NaN	15.463	299	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49368		+	5577	203	3258	3315							0.030072247287534992
FLTGVDPIL	9	Unmodified	_FLTGVDPIL_					0	0	0		INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5;EML3-INTS5|1|fusion	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5557100082	1	974.55571	973.548434	1.3964	0.0013609	0.21474	0.00020928	1.6112	0.0015702	974.5555485256474	31.911	0.1207	31.911	31.887	32.008	0	255	70	1.4678029	0.04087639	1.4678029	298.12057	0	8.302277						170	6	2	NaN	NaN	NaN	0.0023856	1	7710	7710		109.86	47.881	1	37109			5578	287	3259	3316	4403	4403					0.06060126217084871
FLTGVDPIL	9	Unmodified	_FLTGVDPIL_					0	0	0		INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5;EML3-INTS5|1|fusion	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5557100082	1	974.55571	973.548434	0.85325	0.00083154	-0.75091	-0.0007318	0.10235	9.9741E-05	974.554889808666	31.91	0.14477	31.906	31.858	32.003	-0.0037613	252	70	1.4695803	0.04087639	1.4680609	298.48157	0	8.302277						181	7	2	NaN	NaN	NaN	0.00050979	1	7563	7563		115.51	43.516	1	38049			5579	287	3259	3316	4404	4404					0.06060126217084871
FLTLDIELP	9	Unmodified	_FLTLDIELP_					0	0	0			REV__ENST00000472854.5_1_10:97141330-97144028:-|nuORF	REV__ENST00000472854.5_1_10:97141330-97144028:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.592489445	1	1060.59249	1059.58521	1.4788	0.0015684	-0.97863	-0.0010379	0.50021	0.00053052	1060.5919749982957	31.863	0.096548	31.863	31.839	31.935	0	132	118	1.5405227	0.06901872	1.5405227	312.53564	0	14.002258						309	5	4	NaN	NaN	NaN	0.02781	1	11082	11082		61.977	14.937	1	54659	+		5580	12332	3260	3317	4405	4405					0.0578037804300493
FLTLDIELP	9	Unmodified						0	0	0			REV__ENST00000472854.5_1_10:97141330-97144028:-|nuORF	REV__ENST00000472854.5_1_10:97141330-97144028:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1060.59249	1059.58521	1.4788	0.0015684	-0.97863	-0.0010379	0.50021	0.00053052	1060.5919749982957	31.863	0.096548	31.863	31.839	31.935	0	132	118	1.5405227	0.06901872	1.5405227	312.53564		14.002258	0.002733	3.9416E-05	-0.00012514	NaN	61.977	309	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54659	+		5581	12332	3260	3317							0.0578037804300493
FLTSDILI	8	Unmodified	_FLTSDILI_					0	0	0		ENST00000528814.1_1_8:38125880-38126138:-|nuORF	ENST00000528814.1_1_8:38125880-38126138:-|nuORF	ENST00000528814.1_1_8:38125880-38126138:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5291609067002	1	921.529161	920.521884	1.0967	0.0010107	-1.1624	-0.0010712	-0.065706	-6.055E-05	921.5278702300637	35.963	0.096451	35.964	35.916	36.012	0.0011024	261	46	1.4642475	0.02667272	1.462728	297.63742	0	5.421753						102	5	2	NaN	NaN	NaN	0.12449	1	6295	6295		59.445	15.198	1	9668.4			5582	7440	3261	3318	4406	4406					0.058444373257771076
FLTTHPVLP	9	Unmodified	_FLTTHPVLP_					0	0	0		nc|nan|A6NN90|C2orf81;ENSG00000284308|ENST00000684111|C2orf81	nc|nan|A6NN90|C2orf81	nc|nan|A6NN90|C2orf81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.79493496365	2	512.794935	1023.57532	1.126	0.00057742	-10.151	-0.0052051	-9.0245	-0.0046277	512.7901040298553	30.8	0.072392	30.794	30.77	30.842	-0.0057545	1281	58	0.84864825	0.03503555	0.8471288	344.49258	0	14.222046						84	4	2	NaN	NaN	NaN	0.47587	1	9346	9346		10.605	5.1391	1	7087.1			5583	6213	3262	3319	4407	4407					0.06447234828260662
FLTTVAILL	9	Unmodified	_FLTTVAILL_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.6233956429002	1	990.623396	989.616119	1.8656	0.0018481	-1.8544	-0.001837	0.011272	1.1166E-05	990.621329297367	36.422	0.072353	36.422	36.398	36.471	0	150	46	1.5299006	0.026562572	1.5299006	310.6626	0	5.393799						84	4	2	NaN	NaN	NaN	0.078597	1	8220	8220		38.918	0	1	7410.3			5584	5608	3263	3320	4408	4408					0.12089576147900516
FLTTVAILL	9	Unmodified	_FLTTVAILL_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.6233956429002	1	990.623396	989.616119	1.9608	0.0019424	-0.72064	-0.00071389	1.2401	0.0012285	990.6225630167405	36.421	0.072269	36.422	36.398	36.47	0.0016747	144	43	1.533442	0.024787784	1.5319226	311.38174	0	5.0334167						85	4	2	NaN	NaN	NaN	0.17818	1	8049	8049		26.732	1.7706	1	7578.8			5585	5608	3263	3320	4409	4409					0.12089576147900516
FLVQMQDL	8	Unmodified	_FLVQMQDL_					0	0	0		ENST00000588059.5_1_18:61064418-61077532:-|nuORF	ENST00000588059.5_1_18:61064418-61077532:-|nuORF	ENST00000588059.5_1_18:61064418-61077532:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.25732803684997	2	497.257328	992.500103	2.2379	0.0011128	-4.0214	-0.0019997	-1.7835	-0.00088686	497.25466027888405	18.364	0.072088	18.364	18.34	18.412	0	1317	67	0.8265074	0.040635645	0.8265074	335.6442	0	16.502106						110	4	3	NaN	NaN	NaN	0.35353	1	8312	8312		38.918	1.6155	1	17390			5586	7710	3264	3321	4410	4410					0.00355309305530227
FLWREQFYRYY	11	Unmodified	_FLWREQFYRYY_					0	0	0		nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.9093503322501	2	835.90935	1669.80415	1.1313	0.00094562	-2.0346	-0.0017008	-0.9034	-0.00075516	835.9082655607227	30.897	0.072348	30.897	30.873	30.946	0	927	67	1.0648463	0.040065408	1.0648463	430.02698	0	16.179993						182	4	4	NaN	NaN	NaN	0.73057	1	20821	20821		5.4499	3.1118	1	20154			5587	4010	3265	3322	4411	4411					-0.0039621766561594995
FLYRYDWTS	9	Unmodified	_FLYRYDWTS_					0	0	0			REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765	REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.7956632451501	2	625.795663	1249.57677	2.0155	0.0012613	-11.157	-0.0069818	-9.1413	-0.0057206	625.78893041738	25.467	0.19297	25.467	25.419	25.612	0	1185	91	0.90755045	0.05508375	0.90755045	367.51736	0	22.306458						490	9	5	NaN	NaN	NaN	0.23112	1	17761	17761		23.334	4.2161	1	66367	+		5588	13208	3266	3323	4412	4412					-0.03803175873622422
FLYRYDWTS	9	Unmodified						0	0	0			REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765	REV__nc|ENSG00000196417|Q7L2R6-3|ZNF765	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	625.795663	1249.57677	2.0155	0.0012613	-11.157	-0.0069818	-9.1413	-0.0057206	625.78893041738	25.467	0.19297	25.467	25.419	25.612	0	1185	91	0.90755045	0.05508375	0.90755045	367.51736		22.306458	-0.0059129	-0.00046375	0.00075972	NaN	23.334	490	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66367	+		5589	13208	3266	3323							-0.03803175873622422
FLYYPDPVL	9	Unmodified	_FLYYPDPVL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.5819247586999	1	1126.58192	1125.57465	1.8179	0.002048	-4.5562	-0.0051329	-2.7383	-0.0030849	1126.5761165145263	32.466	0.072399	32.466	32.418	32.49	0	63	67	1.5811787	0.038849115	1.5811787	320.54193	0	7.875641						110	4	2	NaN	NaN	NaN	0.041983	1	13910	13910		68.108	41.993	1	20736			5590	1964	3267	3324	4413	4413					0.016883953885553638
FLYYPDPVL	9	Unmodified	_FLYYPDPVL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.5819247586999	1	1126.58192	1125.57465	0.78774	0.00088746	-3.4519	-0.0038889	-2.6642	-0.0030014	1126.5766573002295	32.441	0.07238	32.438	32.414	32.486	-0.0031052	60	58	1.582944	0.03354621	1.5814246	320.8998	0	6.800598						150	4	3	NaN	NaN	NaN	0.030696	1	13481	13481		78.398	43.944	1	19379			5591	1964	3267	3324	4414	4414					0.016883953885553638
FLYYQSQE	8	Unmodified	_FLYYQSQE_					0	0	0		nc|ENSG00000215859|A8MUH7-2|PDZK1P1;ENST00000401008.6_1_1:147468098-147482410:-|nuORF;nc|ENSG00000215859|A8MUH7|PDZK1P1;nc|ENSG00000174827|Q5T2W1-2|PDZK1;ENST00000425209.1_1_1:147466535-147481815:-|nuORF;ENSG00000174827|ENST00000417171|PDZK1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2480145608	2	539.248015	1076.48148	0.82449	0.00044461	1.1356	0.00061236	1.9601	0.001057	539.7485952676764	35.337	0.12063	35.337	35.313	35.434	0	1290	61	0.84311575	0.036893547	0.84311575	342.02344	0	14.966461						218	6	4	NaN	NaN	NaN	0.76406	1	11816	11816		14.042	1.0388	1	21356			5592	4960	3268	3325	4415	4415					-0.053705290646803405
FMDDELTIF	9	Unmodified	_FMDDELTIF_					0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.7573578266	2	565.757358	1129.50016	0.91825	0.00051951	-1.3523	-0.00076506	-0.43402	-0.00024555	565.7565453250197	35.119	0.12068	35.119	35.07	35.191	-4.5776E-05	1251	43	0.8670771	0.0257864	0.8655577	351.53503	0	10.454468						129	6	2	NaN	NaN	NaN	0.20577	1	13609	13609		24.961	5.8427	1	19175	+		5593	8743	3269	3326	4416	4416					-0.05940735485114601
FMDDELTIF	9	Unmodified	_FMDDELTIF_					0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1130.5074391865999	1	1130.50744	1129.50016	0.74298	0.00083995	4.069	0.0046	4.812	0.00544	1130.5125554835183	35.119	0.16894	35.119	35.094	35.263	-4.5776E-05	57	76	1.5847093	0.04414904	1.5831898	321.2441	0	8.9496765						263	8	3	NaN	NaN	NaN	0.094712	1	13611	13611		36.586	5.0254	1	27466	+		5594	8743	3269	3326	4417	4417					-0.05940735485114601
FMDDELTIF	9	Unmodified						0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1130.50744	1129.50016	1.2631	0.0014279	2.9598	0.0033461	4.2229	0.004774	1130.5108423261238	35.12	0.12067	35.12	35.096	35.217	0	57	76	1.5847093	0.04414451	1.5847093	321.2441		8.94873	0.00073876	-0.00069823	0.00075972	NaN	36.586	238	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23264	+		5595	8743	3269	3326							-0.05940735485114601
FMDDELTIF	9	Unmodified						0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.757358	1129.50016	0.92305	0.00052222	-1.8164	-0.0010277	-0.89337	-0.00050543	565.7563821062395	35.12	0.14478	35.12	35.072	35.217	0	1254	43	0.8652351	0.025789201	0.8652351	350.78827		10.455566	0.00073876	-0.00025633	-0.00016127	NaN	24.961	127	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21286	+		5596	8743	3269	3326							-0.05940735485114601
FMDDELTIF	9	Unmodified						0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1130.50744	1129.50016	0.74298	0.00083995	4.069	0.0046	4.812	0.00544	1130.5125554835183	35.119	0.16894	35.119	35.094	35.263	-4.5776E-05	57	76	1.5847093	0.04414904	1.5831898	321.2441		8.9496765	-0.00073876	0.00055573	-0.00075972	NaN	36.586	263	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27466	+		5597	8743	3269	3326							-0.05940735485114601
FMDDELTIF	9	Unmodified						0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.757358	1129.50016	0.91825	0.00051951	-1.3523	-0.00076506	-0.43402	-0.00024555	565.7565453250197	35.119	0.12068	35.119	35.07	35.191	-4.5776E-05	1251	43	0.8670771	0.0257864	0.8655577	351.53503		10.454468	-0.00073876	0.00026887	0.00016127	NaN	24.961	129	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19175	+		5598	8743	3269	3326							-0.05940735485114601
FMFLVHHS	8	Unmodified	_FMFLVHHS_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ABCA5|p.K887E|1|0.22|ENSG00000154265|chr17:69274064-69274064|T/C|missense_variant;ENST00000586995.5_3_17:67270088-67280211:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.2523800447001	2	509.25238	1016.49021	2.0083	0.0010228	-5.86	-0.0029842	-3.8517	-0.0019615	509.24920150168464	14.093	0.12009	14.093	14.045	14.165	0	1305	40	0.83389086	0.023989916	0.83389086	338.53336	0	9.739136						138	6	4	NaN	NaN	NaN	0.79379	1	9230	9230		10.052	0.92837	1	14015			5599	3837	3270	3327	4418	4418					-0.01737833909157871
FMGNTSPSS	9	Unmodified	_FMGNTSPSS_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.19746743425003	2	464.197467	926.380382	0.33441	0.00015523	3.4534	0.0016031	3.7878	0.0017583	464.19900335115994	30.004	0.33783	29.997	29.852	30.19	-0.0064106	1365	52	0.7969414	0.031449556	0.79542196	323.953	0	12.784119						208	15	2	NaN	NaN	NaN	0.36492	1	6385	6385		15.175	2.1725	1	30250	+		5600	9461	3271	3328	4419	4419					-0.08575304039015919
FMGNTSPSS	9	Unmodified						0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	464.197467	926.380382	1.3146	0.00061023	1.8333	0.00085102	3.1479	0.0014613	464.19841371554617	30.029	0.31376	30.029	29.86	30.173	0	1365	46	0.7969414	0.027743638	0.7969414	323.95303		11.277679	0.015732	-0.00070334	0.00075972	NaN	15.175	275	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32216	+		5601	9461	3271	3328							-0.08575304039015919
FMGNTSPSS	9	Unmodified						0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	464.197467	926.380382	0.33441	0.00015523	3.4534	0.0016031	3.7878	0.0017583	464.19900335115994	30.004	0.33783	29.997	29.852	30.19	-0.0064106	1365	52	0.7969414	0.031449556	0.79542196	323.953		12.784119	-0.015732	0.00080076	-0.00075972	NaN	15.175	208	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30250	+		5602	9461	3271	3328							-0.08575304039015919
FMHGLAEL	8	Unmodified	_FMHGLAEL_					0	0	0			REV__ENSG00000133275|ENST00000255641|CSNK1G2;REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3	REV__ENSG00000133275|ENST00000255641|CSNK1G2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.4549501061	1	917.45495	916.447674	2.2112	0.0020287	3.1082	0.0028516	5.3194	0.0048803	917.4577926497259	19.54	0.023991	19.54	19.516	19.54	0	384	31	1.3911947	0.017858505	1.3911947	282.80652	0	3.6303406						33	2	2	NaN	NaN	NaN	0.66957	1	6351	6351		20.952	3.1535	1	1763.8	+		5603	9564;10026	3272	3329	4420	4420					-0.013892290374201366
FMHQTLEPNF	10	Unmodified	_FMHQTLEPNF_					0	0	0			REV__SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|58|2|anti-sense	REV__SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|58|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2949731409001	2	632.294973	1262.57539	1.6929	0.0010704	-10.915	-0.0069014	-9.222	-0.005831	632.2870191614911	29.836	0.1207	29.836	29.763	29.884	0	1155	85	0.92591566	0.05137825	0.92591566	374.91226	0	20.803558						158	6	2	NaN	NaN	NaN	0.76025	1	18043	18043		3.9281	0.7165	1	15052	+		5604	13346	3273	3330	4421	4421					-0.04539133234015935
FMITSAFFFYF	11	Unmodified	_FMITSAFFFYF_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.8359424986	2	710.835942	1419.65733	0.62469	0.00044405	1.0068	0.00071568	1.6315	0.0011597	710.8365230866099	35.77	0.24099	35.77	35.65	35.891	0.00053024	1041	52	0.9955231	0.031071365	0.99400365	402.614	0	12.56604						224	11	2	NaN	NaN	NaN	0.688	1	19256	19256		8.2448	1.8149	1	22469	+		5605	10086	3274	3331	4422	4422					-0.03571030874945791
FMKFPFFFVWL	11	Unmodified	_FMKFPFFFVWL_					0	0	0			REV__ENST00000395535.7_1_7:54819960-54820020:-|nuORF	REV__ENST00000395535.7_1_7:54819960-54820020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.8935947632501	2	754.893595	1507.77264	1.708	0.0012894	-10.451	-0.0078891	-8.7425	-0.0065997	754.885755002788	24.478	0.19307	24.465	24.296	24.489	-0.012747	999	70	1.0210962	0.041988075	1.0195768	412.7235	0	16.971436						489	9	5	NaN	NaN	NaN	0.44477	1	19590	19590		20.449	8.4	1	121180	+		5606	12008	3275	3332	4423	4423					0.03906118046734264
FMKGFVPEL	9	Unmodified	_FMKGFVPEL_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5594151776	1	1067.55942	1066.55214	1.8864	0.0020138	-9.5289	-0.010173	-7.6425	-0.0081589	1067.5493286333879	27.905	0.048262	27.905	27.857	27.905	0	138	64	1.5369828	0.03717959	1.5369828	311.79132	0	7.5422363						70	3	2	NaN	NaN	NaN	0.29681	1	11405	11405		19.118	1.3193	1	7531.6	+		5607	9629	3276	3333	4424	4424					0.021524727192854698
FMKSVKLEWV	10	Unmodified	_FMKSVKLEWV_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.9020149721	3	422.902015	1265.68422	1.7974	0.00076011	-2.3688	-0.0010018	-0.57148	-0.00024168	422.900691350204	23.513	0.12061	23.5	23.476	23.596	-0.013294	1404	34	0.77288127	0.02037406	0.7713618	469.40414	0	12.374023						84	6	2	NaN	NaN	NaN	0.68699	1	17330	17330		8.9416	5.0409	1	6225			5608	1304	3277	3334	4425	4425					0.062000777362527515
FMLLYSTVWNS	11	Unmodified	_FMLLYSTVWNS_					0	0	0			REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8339311259002	2	680.833931	1359.65331	1.0546	0.00071804	-7.4325	-0.0050603	-6.3778	-0.0043422	680.8275927287423	32.369	0.024132	32.365	32.365	32.389	-0.0037613	1101	97	0.95892316	0.058585227	0.9574037	387.9772	0	23.70337						93	2	2	NaN	NaN	NaN	0.77743	1	18773	18773		0.69115	0.17511	1	7181.6	+		5609	10062	3278	3335	4426	4426					-0.012131203686294612
FMMRYDQEW	9	Unmodified	_FMMRYDQEW_					0	0	0			REV__ENSG00000212710|ENST00000391403|CTAGE1	REV__ENSG00000212710|ENST00000391403|CTAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.2731834538	2	653.273183	1304.53181	1.1849	0.00077408	7.1988	0.0047028	8.3837	0.0054769	653.2779489387566	27.35	0.1207	27.35	27.302	27.422	0	1122	43	0.9460945	0.025669754	0.9460945	382.94946	0	10.39032						171	6	3	NaN	NaN	NaN	0.3389	1	18839	18839		16.417	1.5626	1	32811	+		5610	11279	3279	3336	4427	4427					-0.10827066002821084
FMPDGETEAQR	11	Unmodified	_FMPDGETEAQR_					0	0	0		ENST00000288502.8_2_9:117405935-117406097:+|nuORF	ENST00000288502.8_2_9:117405935-117406097:+|nuORF	ENST00000288502.8_2_9:117405935-117406097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.52404340329997	3	427.524043	1279.5503	1.53	0.0006541	-3.7993	-0.0016243	-2.2693	-0.0009702	427.5223375551009	15.942	0.1919	15.942	15.918	16.11	0	1476	37	0.72837335	0.022282898	0.72837335	442.32092	0	13.531799						245	9	3	NaN	NaN	NaN	0.71564	1	18406	18406		2.789	0	1	39205			5611	6376	3280	3337	4428	4428					-0.07829232827270971
FMQKPEMRQ	9	Unmodified	_FMQKPEMRQ_					0	0	0			REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF	REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.8634544105	3	398.863454	1193.56853	2.0932	0.00083491	-0.68649	-0.00027381	1.4067	0.0005611	398.8630156196836	30.1	0.048237	30.094	30.07	30.118	-0.0064106	1479	49	0.72651637	0.02971381	0.7249969	441.5319	0	18.058228						41	3	2	NaN	NaN	NaN	0.63698	1	15631	15631		2.1026	0	1	2189.9	+		5612	8857	3281	3338	4429	4429					-0.020507693862555243
FMRQLFRYYIQ	11	Unmodified	_FMRQLFRYYIQ_					0	0	0			REV__ENSG00000119698|ENST00000304338|PPP4R4	REV__ENSG00000119698|ENST00000304338|PPP4R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.9082960872503	2	782.908296	1563.80204	2.1889	0.0017137	-8.2355	-0.0064477	-6.0466	-0.0047339	783.4016611218618	22.573	0.048246	22.559	22.511	22.559	-0.01354	894	28	1.0848607	0.01636672	1.0833412	438.35394	0	6.613159						41	3	2	NaN	NaN	NaN	0.7806	1	19693	19693		0.11306	0	1	3394.5	+		5613	9295	3282	3339	4430	4430					0.04269030324940104
FMSDHYLEVL	10	Unmodified	_FMSDHYLEVL_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.2971814788501	2	627.297181	1252.57981	0.95251	0.00059751	-0.037192	-2.333E-05	0.91532	0.00057418	627.2977288255918	30.97	0.14475	30.97	30.825	30.97	0	1152	37	0.92775106	0.02202636	0.92775106	375.6878	0	8.919464						156	7	3	NaN	NaN	NaN	0.67523	1	17843	17843		9.746	0	1	19706			5614	5031	3283	3340	4431	4431					-0.0363766881112042
FMWSLWNEGQ	10	Unmodified	_FMWSLWNEGQ_					0	0	0			REV__RPS6KB1-VMP1|10|fusion	REV__RPS6KB1-VMP1|10|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2871481088	2	649.287148	1296.55974	1.7879	0.0011608	-3.537	-0.0022966	-1.7492	-0.0011357	649.2845967716171	25.129	0.14478	25.129	25.129	25.274	0	1125	70	0.9442611	0.042164862	0.9442611	382.23203	0	17.068115						178	7	2	NaN	NaN	NaN	0.66626	1	18708	18708		10.36	1.4411	1	27570	+		5615	13307	3284	3341	4432	4432					-0.07667419751078342
FMWSYQLL	8	Unmodified	_FMWSYQLL_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5281150492	1	1087.52812	1086.52084	1.8221	0.0019816	-0.079374	-8.6322E-05	1.7427	0.0018953	1087.5287815240204	32.949	0.21726	32.949	32.852	33.069	0	66	181	1.579413	0.10615468	1.579413	320.32346	0	21.529388						616	10	4	NaN	NaN	NaN	0.54545	1	12241	12241		28.667	0.8777	1	326310	+		5616	9151	3285	3342	4433	4433					-0.0189610031477514
FNAEEYEKS	9	Unmodified	_FNAEEYEKS_					0	0	0			REV__nc|ENSG00000163626|Q8N8Q8-3|COX18	REV__nc|ENSG00000163626|Q8N8Q8-3|COX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7458360126	2	558.745836	1115.47712	0.74467	0.00041608	5.0571	0.0028256	5.8017	0.0032417	558.7496921537467	32.127	0.12059	32.123	32.099	32.22	-0.0037575	1251	73	0.8670771	0.04422921	0.8655577	351.58832	0	17.934357						165	6	3	NaN	NaN	NaN	0.51576	1	13095	13095		8.962	0	1	17932	+		5617	13156	3286	3343	4434	4434					-0.07600038278246757
FNAEEYEKS	9	Unmodified						0	0	0			REV__nc|ENSG00000163626|Q8N8Q8-3|COX18	REV__nc|ENSG00000163626|Q8N8Q8-3|COX18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.745836	1115.47712	0.74467	0.00041608	5.0571	0.0028256	5.8017	0.0032417	558.7496921537467	32.127	0.12059	32.123	32.099	32.22	-0.0037575	1251	73	0.8670771	0.04422921	0.8655577	351.58832		17.934357	-0.014484	6.3644E-05	0.00016127	NaN	8.962	165	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17932	+		5618	13156	3286	3343							-0.07600038278246757
FNAPKGGN	8	Unmodified	_FNAPKGGN_					0	0	0			REV__ENSG00000172340|ENST00000307227|SUCLG2	REV__ENSG00000172340|ENST00000307227|SUCLG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.3998780682001	1	804.399878	803.392602	1.186	0.00095404	-9.1436	-0.0073551	-7.9575	-0.006401	804.3924318487753	31.284	0.072392	31.284	31.284	31.356	0	474	43	1.3375392	0.025074005	1.3375392	272.46484	0	5.107727						59	4	2	NaN	NaN	NaN	0.8439	1	4785	4785		3.1533	1.483	1	3900	+		5619	10653	3287	3344	4435	4435					-0.016958995136633348
FNAPKGGN	8	Unmodified						0	0	0			REV__ENSG00000172340|ENST00000307227|SUCLG2	REV__ENSG00000172340|ENST00000307227|SUCLG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	804.399878	803.392602	1.186	0.00095404	-9.1436	-0.0073551	-7.9575	-0.006401	804.3924318487753	31.284	0.072392	31.284	31.284	31.356	0	474	43	1.3375392	0.025074005	1.3375392	272.46484		5.107727	-0.0090272	0.00080127	0.00075972	NaN	3.1533	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3900	+		5620	10653	3287	3344							-0.016958995136633348
FNAPKGGN	8	Unmodified						0	0	0			REV__ENSG00000172340|ENST00000307227|SUCLG2	REV__ENSG00000172340|ENST00000307227|SUCLG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	804.399878	803.392602	1.6345	0.0013148	-11.29	-0.0090816	-9.6553	-0.0077667	804.3914564688796	31.307	0.096529	31.302	31.253	31.35	-0.0050716	474	40	1.3375392	0.0232867	1.3360198	272.46484		4.7436523	0.0090272	-0.00092523	-0.00075972	NaN	3.1533	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4401.5	+		5621	10653	3287	3344							-0.016958995136633348
FNEDDSDIGR	10	Unmodified	_FNEDDSDIGR_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.8352749279	3	389.835275	1166.484	0.98088	0.00038238	-8.7185	-0.0033988	-7.7376	-0.0030164	389.83209230876747	35.818	0.26519	35.819	35.77	36.036	0.00052643	1494	46	0.7172283	0.027873337	0.71570885	436.00266	0	16.944153						260	12	4	NaN	NaN	NaN	0.73444	1	14810	14810		2.7042	0	1	47620			5622	2385	3288	3345	4436	4436					-0.09258725397648959
FNEEEVAMAF	10	Unmodified	_FNEEEVAMAF_					0	0	0		tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	tr|U7STF1|U7STF1_FUSNUExodeoxyribonuclease7largesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=xseAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.75788914285	2	593.757889	1185.50123	0.4666	0.00027704	2.6696	0.0015851	3.1362	0.0018622	593.7599018366521	43.583	0.095947	43.594	43.57	43.666	0.01099	1197	34	0.9001988	0.02022028	0.8986794	364.75546	0	8.193146						74	5	2	NaN	NaN	NaN	0.65442	1	15405	15405		11.17	0	1	4733			5623	13854	3289	3346	4437	4437					-0.08410521116229575
FNFMLLPCL	9	Unmodified	_FNFMLLPCL_					0	0	0		ENST00000513761.5_1_4:170541930-170542083:+|nuORF	ENST00000513761.5_1_4:170541930-170542083:+|nuORF	ENST00000513761.5_1_4:170541930-170542083:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.27974888815	2	549.279749	1096.54494	1.664	0.00091402	5.8904	0.0032355	7.5544	0.0041495	549.282644787603	23.417	0.072372	23.417	23.369	23.441	0	1236	73	0.876284	0.04419577	0.876284	355.39645	0	17.92456						119	4	2	NaN	NaN	NaN	0.29681	1	12697	12697		19.118	3.6556	1	29183			5624	7367	3290	3347	4438	4438					0.000534168472086094
FNFMLLPCL	9	Unmodified						0	0	0		ENST00000513761.5_1_4:170541930-170542083:+|nuORF	ENST00000513761.5_1_4:170541930-170542083:+|nuORF	ENST00000513761.5_1_4:170541930-170542083:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.279749	1096.54494	1.8226	0.0010011	8.2163	0.004513	10.039	0.0055142	549.2844787852885	23.441	0.096525	23.427	23.355	23.451	-0.013294	1236	73	0.876284	0.044186175	0.8747646	355.39645		17.920685	0.0052149	0.0011588	-0.00075972	NaN	19.118	144	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28981			5625	7367	3290	3347							0.000534168472086094
FNFQYPNQ	8	Unmodified	_FNFQYPNQ_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.162774742	3	353.162775	1056.46649	1.411	0.0004983	8.0419	0.0028401	9.4528	0.0033384	353.1658314631472	20.742	0.12053	20.742	20.694	20.814	0	1503	76	0.711653	0.04647571	0.711653	433.1385	0	28.286865						207	6	3	NaN	NaN	NaN	0.8439	1	10924	10924		1.9246	0.22244	1	25540			5626	2101	3291	3348	4439	4439					-0.059479761420107025
FNGTFVKLY	9	Unmodified	_FNGTFVKLY_					0	0	0		ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENST00000397636.2_1_7:99737498-99738123:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7923922747001	2	544.792392	1087.57023	1.5483	0.00084351	2.635	0.0014356	4.1834	0.0022791	544.7938338875206	23.971	0.19301	23.958	23.91	24.103	-0.01305	1233	94	0.87812483	0.057052255	0.8766054	356.1795	0	23.141174						284	9	3	NaN	NaN	NaN	0.35794	1	11981	11981		15.463	2.8748	1	45801			5627	6809	3292	3349	4440	4440					0.0299493096565584
FNHISHQAY	9	Unmodified	_FNHISHQAY_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.8455571340333	3	372.845557	1115.51484	1.5071	0.00056191	-2.5319	-0.000944	-1.0248	-0.00038208	372.84454497518385	15.222	0.1922	15.222	15.174	15.366	0	1524	46	0.698637	0.027903616	0.698637	424.92728	0	16.971619						177	9	3	NaN	NaN	NaN	0.41766	1	13488	13488		11.739	0.17755	1	19471	+		5628	11050	3293	3350	4441	4441					-0.038294825021012
FNIAPQKEEPE	11	Unmodified	_FNIAPQKEEPE_					0	0	0		nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-2|MTMR11;ENST00000492824.5_1_1:149905714-149908540:-|nuORF;ENSG00000014914|ENST00000439741|MTMR11	nc|ENSG00000014914|A4FU01-5|MTMR11	nc|ENSG00000014914|A4FU01-5|MTMR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3222421364	2	651.322242	1300.62993	1.8978	0.0012361	-11.739	-0.007646	-9.8414	-0.0064099	651.3164226123525	26.288	0.1448	26.288	26.191	26.336	0	1140	70	0.93509084	0.04219216	0.93509084	378.5075	0	17.078613						176	7	3	NaN	NaN	NaN	0.75907	1	18789	18789		3.5794	0.0096432	1	15708			5629	7212	3294	3351	4442	4442					-0.008358428816336527
FNIKVIFS	8	Unmodified	_FNIKVIFS_					0	0	0		nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.28420310185004	2	484.284203	966.553853	1.6977	0.00082216	-2.1239	-0.0010286	-0.42622	-0.00020641	484.2832804282574	27.688	0.12066	27.688	27.639	27.76	0	1284	64	0.8468043	0.038731933	0.8468043	344.01294	0	15.734802						155	6	3	NaN	NaN	NaN	0.83211	1	7528	7528		4.9097	0	1	17639			5630	2259	3295	3352	4443	4443					0.06923849799568416
FNILPAPH	8	Unmodified	_FNILPAPH_					0	0	0		ENST00000518797.5_2_5:149781626-149781806:-|nuORF	ENST00000518797.5_2_5:149781626-149781806:-|nuORF	ENST00000518797.5_2_5:149781626-149781806:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.75307014895	2	454.75307	907.491587	0.80611	0.00036658	-2.4927	-0.0011336	-1.6866	-0.00076698	454.751732143801	20.887	0.16854	20.887	20.838	21.007	0	1551	79	0.6818875	0.048374176	0.6818875	277.26846	0	19.66986						169	8	3	NaN	NaN	NaN	0.66957	1	6196	6196		20.952	0	1	19682			5631	7387	3296	3353	4444	4444					0.03414123451227624
FNKFRENFIFF	11	Unmodified	_FNKFRENFIFF_					0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.5943498946333	3	503.59435	1507.76122	1.5441	0.00077761	-4.7225	-0.0023782	-3.1784	-0.0016006	503.5924644334559	24.936	0.14479	24.936	24.791	24.936	0	1419	40	0.76361835	0.024091423	0.76361835	462.975	0	14.606445						130	7	2	NaN	NaN	NaN	0.70989	1	20607	20607		6.8076	0	1	18449	+		5632	11254	3297	3354	4445	4445					0.027650122769273366
FNKFRENFIFF	11	Unmodified	_FNKFRENFIFF_					0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.5943498946333	3	503.59435	1507.76122	1.703	0.00085763	-4.5764	-0.0023047	-2.8734	-0.001447	503.5922575900723	24.237	0.048328	24.237	24.188	24.237	0	1419	181	0.76361835	0.11102897	0.76361835	462.975	0	67.31586						361	3	4	NaN	NaN	NaN	0.62851	1	20608	20608		12.15	1.3271	1	217730	+		5633	11254	3297	3354	4446	4446					0.027650122769273366
FNKFRENFIFF	11	Unmodified	_FNKFRENFIFF_					0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.5943498946333	3	503.59435	1507.76122	1.5481	0.00077961	-4.9379	-0.0024867	-3.3898	-0.0017071	503.5916044020412	25.322	0.14473	25.31	25.189	25.334	-0.012011	1416	49	0.76547134	0.029649377	0.7639519	464.09845	0	17.976166						201	7	3	NaN	NaN	NaN	0.76796	1	19587	19587		2.3495	0.31368	1	22087	+		5634	11254	3297	3354	4447	4447					0.027650122769273366
FNKFRENFIFF	11	Unmodified						0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	503.59435	1507.76122	1.5441	0.00077761	-4.7225	-0.0023782	-3.1784	-0.0016006	503.5924644334559	24.936	0.14479	24.936	24.791	24.936	0	1419	40	0.76361835	0.024091423	0.76361835	462.975		14.606445	-0.017833	0.00040111	-0.00016677	NaN	6.8076	130	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18449	+		5635	11254	3297	3354							0.027650122769273366
FNKFRENFIFF	11	Unmodified						0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	503.59435	1507.76122	1.6114	0.0008115	-4.8705	-0.0024528	-3.2591	-0.0016413	503.92625583573187	25.009	0.072386	25.009	24.985	25.057	0	1419	43	0.76361835	0.02594322	0.76361835	462.975		15.729126	-0.15069	6.9931E-05	-0.00016677	NaN	2.3495	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13461	+		5636	11254	3297	3354							0.027650122769273366
FNKFRENFIFF	11	Unmodified						0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	503.59435	1507.76122	1.703	0.00085763	-4.5764	-0.0023047	-2.8734	-0.001447	503.5922575900723	24.237	0.048328	24.237	24.188	24.237	0	1419	181	0.76361835	0.11102897	0.76361835	462.975		67.31586	0	0	0	NaN	12.15	361	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217730	+		5637	11254	3297	3354							0.027650122769273366
FNKFRENFIFF	11	Unmodified						0	0	0			REV__ENSG00000204977|ENST00000378182|TRIM13	REV__ENSG00000204977|ENST00000378182|TRIM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	503.59435	1507.76122	1.5481	0.00077961	-4.9379	-0.0024867	-3.3898	-0.0017071	503.5916044020412	25.322	0.14473	25.31	25.189	25.334	-0.012011	1416	49	0.76547134	0.029649377	0.7639519	464.09845		17.976166	0.15069	-3.1867E-05	0.00016677	NaN	2.3495	201	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22087	+		5638	11254	3297	3354							0.027650122769273366
FNLGLYSFI	9	Unmodified	_FNLGLYSFI_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5666090455	1	1073.56661	1072.55933	1.4205	0.001525	5.6913	0.00611	7.1118	0.007635	1073.5777991398434	35.675	0.096416	35.675	35.603	35.699	0	69	40	1.5776473	0.022957563	1.5776473	320.01755	0	4.65683						41	5	2	NaN	NaN	NaN	0.23112	1	11677	11677		23.334	6.7503	1	2243	+		5639	9707	3298	3355	4448	4448					0.0259552859138239
FNNVQAIFI	9	Unmodified	_FNNVQAIFI_					0	0	0			REV__nc|ENSG00000079215|P43003-2|SLC1A3	REV__nc|ENSG00000079215|P43003-2|SLC1A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2900167612501	2	533.290017	1064.56548	1.1316	0.00060345	-11.068	-0.0059024	-9.9363	-0.0052989	533.2844403729687	31.621	0.072403	31.621	31.573	31.646	0	1254	55	0.8652351	0.033157587	0.8652351	351.0462	0	13.452789						109	4	2	NaN	NaN	NaN	0.29681	1	11335	11335		19.118	1.1486	1	14283	+		5640	8638	3299	3356	4449	4449					0.03578046822894976
FNNVQAIFI	9	Unmodified						0	0	0			REV__nc|ENSG00000079215|P43003-2|SLC1A3	REV__nc|ENSG00000079215|P43003-2|SLC1A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	533.290017	1064.56548	1.1316	0.00060345	-11.068	-0.0059024	-9.9363	-0.0052989	533.2844403729687	31.621	0.072403	31.621	31.573	31.646	0	1254	55	0.8652351	0.033157587	0.8652351	351.0462		13.452789	0	0	0	NaN	19.118	109	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14283	+		5641	8638	3299	3356							0.03578046822894976
FNPDSHQSE	9	Unmodified	_FNPDSHQSE_					0	0	0		ENST00000515051.1_1_5:175956111-175956726:-|nuORF;ENST00000508478.1_1_5:175956522-175957037:-|nuORF;ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44	ENST00000515051.1_1_5:175956111-175956726:-|nuORF;ENSG00000146083|ENST00000274811|RNF44	ENSG00000146083|ENST00000274811|RNF44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.72015257835	2	530.720153	1059.42575	0.86543	0.0004593	4.634	0.0024594	5.4995	0.0029187	531.2232578451368	26.529	0.12064	26.518	26.47	26.59	-0.010645	1308	64	0.83204526	0.03874868	0.8305259	337.60114	0	15.722229						307	6	5	NaN	NaN	NaN	0.40649	1	10812	10812		13.463	0.46021	1	42047			5642	7373;3548	3300	3357	4450	4450					-0.10158362252286679
FNQTQFEQF	9	Unmodified	_FNQTQFEQF_					0	0	0			REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7696454599	2	594.769645	1187.52474	0.86357	0.00051362	-3.624	-0.0021555	-2.7605	-0.0016418	594.767345130353	36.035	0.14465	36.036	35.988	36.132	0.0011024	1185	58	0.90755045	0.034922183	0.906031	367.7271	0	14.149994						130	7	2	NaN	NaN	NaN	0.56671	1	15458	15458		6.8632	1.1691	1	14304	+		5643	9147	3301	3358	4451	4451					-0.06152339287405084
FNQTQFEQF	9	Unmodified						0	0	0			REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	594.769645	1187.52474	0.97526	0.00058006	-3.115	-0.0018527	-2.1397	-0.0012726	594.7667356256829	36.012	0.16891	36.012	35.988	36.157	0	1188	64	0.90571284	0.038602352	0.90571284	366.98254		15.641144	-0.011893	0.00036245	-0.00015909	NaN	6.8632	137	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16025	+		5644	9147	3301	3358							-0.06152339287405084
FNQTQFEQF	9	Unmodified						0	0	0			REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.769645	1187.52474	0.86357	0.00051362	-3.624	-0.0021555	-2.7605	-0.0016418	594.767345130353	36.035	0.14465	36.036	35.988	36.132	0.0011024	1185	58	0.90755045	0.034922183	0.906031	367.7271		14.149994	0.011893	-0.00024306	0.00015909	NaN	6.8632	130	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14304	+		5645	9147	3301	3358							-0.06152339287405084
FNQWVYEFDQ	10	Unmodified	_FNQWVYEFDQ_					0	0	0			REV__ENSG00000124701|ENST00000244669|APOBEC2	REV__ENSG00000124701|ENST00000244669|APOBEC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.30130972905	2	688.30131	1374.58807	1.4921	0.001027	6.0245	0.0041467	7.5166	0.0051737	688.3057372541634	19.563	0.19262	19.549	19.452	19.645	-0.014141	1083	40	0.9699114	0.023798943	0.96839195	392.38007	0	9.62793						238	9	5	NaN	NaN	NaN	0.5358	1	18911	18911		17.97	1.7439	1	21145	+		5646	9381	3302	3359	4452	4452					-0.08424398570150515
FNSGNTKVF	9	Unmodified	_FNSGNTKVF_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5;ENST00000553943.1_1_14:69585909-69589057:-|nuORF	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5050714212002	1	1013.50507	1012.49779	1.659	0.0016814	4.1389	0.0041948	5.7979	0.0058762	1013.5089939901535	27.036	0.096506	27.036	26.964	27.06	0	204	55	1.4979934	0.031947732	1.4979934	304.08905	0	6.485321						97	5	2	NaN	NaN	NaN	0.66196	1	9075	9075		2.4615	0	1	6650.6			5647	3244	3303	3360	4453	4453					-0.00795403107895254
FNSIFTDTL	9	Unmodified	_FNSIFTDTL_					0	0	0		tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.263664625	2	529.263665	1056.51278	1.6483	0.0008724	0.57304	0.00030329	2.2214	0.0011757	529.2627988252701	28.87	0.048239	28.87	28.87	28.918	0	1260	34	0.8615505	0.020266235	0.8615505	349.58524	0	8.223267						44	3	2	NaN	NaN	NaN	0.58159	1	10939	10939		6.2502	0.55606	1	3285.7			5648	13800	3304	3361	4454	4454					-0.013219560305742561
FNSIFTDTL	9	Unmodified						0	0	0		tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	tr|U7SPG6|U7SPG6_FUSNURIPmetalloproteaseRsePOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01730PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.263665	1056.51278	1.2578	0.00066573	-2.5264	-0.0013371	-1.2686	-0.00067141	529.7632218992255	28.869	0.096537	28.861	28.813	28.909	-0.0083504	1257	37	0.86339295	0.022109807	0.8618735	350.33282		8.971344	-0.0045727	-0.0014878	0.00016147	NaN	6.2502	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4421.5			5649	13800	3304	3361							-0.013219560305742561
FNSKYLELF	9	Unmodified	_FNSKYLELF_					0	0	0		ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.802956961	2	580.802957	1159.59136	0.94623	0.00054957	-0.7557	-0.00043891	0.19053	0.00011066	581.3024678883892	38.372	0.16817	38.372	38.299	38.468	0	1215	70	0.8891654	0.042292476	0.8891654	360.37738	0	17.141083						346	8	4	NaN	NaN	NaN	0.14787	1	15125	15125		28.896	1.5994	1	42197			5650	4164	3305	3362	4455	4455					0.017948962744867458
FNSSFDITQ	9	Unmodified	_FNSSFDITQ_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7430963584001	2	529.743096	1057.47164	0.95446	0.00050562	3.824	0.0020258	4.7785	0.0025314	529.7462883484303	36.131	0.19283	36.132	36.084	36.277	0.0011024	1275	52	0.85233563	0.0313375	0.8508162	345.84213	0	12.715424						183	6	4	NaN	NaN	NaN	0.35794	1	10745	10745		15.463	2.4598	1	24625	+		5651	9642	3306	3363	4456	4456					-0.05479717070033985
FNSVLLDF	8	Unmodified	_FNSVLLDF_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1;nc|ENSG00000162779|Q5T1B0-2|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.75019310900007	2	477.750193	953.485833	1.0134	0.00048416	-1.4533	-0.00069434	-0.43993	-0.00021018	477.7496205927697	36.998	0.14434	37	36.976	37.121	0.0022507	1323	52	0.8228144	0.031384945	0.82129496	334.33133	0	12.752533						119	7	2	NaN	NaN	NaN	0.81756	1	7020	7020		6.8632	0	1	11086			5652	4179	3307	3364	4457	4457					0.007229801489188503
FNSVLMELF	9	Unmodified	_FNSVLMELF_					0	0	0			REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2782604442001	2	550.27826	1098.54197	1.4229	0.00078301	-1.8861	-0.0010379	-0.46321	-0.00025489	550.2763548871783	38.321	0.16826	38.325	38.277	38.445	0.0040245	1227	64	0.88180584	0.038656652	0.8802864	357.6279	0	15.677704						181	8	3	NaN	NaN	NaN	0.35794	1	12448	12448		15.463	1.4211	1	16092	+		5653	12150	3308	3365	4458	4458					-0.0033613500593219214
FNSVLMELF	9	Unmodified						0	0	0			REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.27826	1098.54197	0.39207	0.00021575	-2.5858	-0.0014229	-2.1937	-0.0012071	550.2759025987144	38.324	0.12014	38.324	38.275	38.396	0	1230	61	0.8799654	0.036821842	0.8799654	356.8815		14.933563	-0.00085902	-0.00044091	-0.00016048	NaN	15.463	128	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11165	+		5654	12150	3308	3365							-0.0033613500593219214
FNSVLMELF	9	Unmodified						0	0	0			REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	REV__ENST00000429976.5_2_3:36868431-36868629:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.27826	1098.54197	1.4229	0.00078301	-1.8861	-0.0010379	-0.46321	-0.00025489	550.2763548871783	38.321	0.16826	38.325	38.277	38.445	0.0040245	1227	64	0.88180584	0.038656652	0.8802864	357.6279		15.677704	0.00085902	0.00032908	0.00016048	NaN	15.463	181	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16092	+		5655	12150	3308	3365							-0.0033613500593219214
FNTNGTLI	8	Unmodified	_FNTNGTLI_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4570585961002	1	879.457059	878.449782	1.0803	0.00095007	4.3604	0.0038348	5.4407	0.0047849	879.4611492822178	34.059	0.072472	34.059	34.035	34.107	0	402	64	1.3804773	0.03750491	1.3804773	280.8074	0	7.628998						110	4	2	NaN	NaN	NaN	0.49126	1	5782	5782		31.561	0	1	9375.2			5656	4379	3309	3366	4459	4459					0.00569522972057257
FNTNGTLI	8	Unmodified	_FNTNGTLI_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4570585961002	1	879.457059	878.449782	1.0031	0.00088222	4.8752	0.0042875	5.8783	0.0051697	879.461339232578	34.058	0.072456	34.056	34.032	34.105	-0.0012474	399	70	1.382264	0.04107237	1.3807446	281.17084	0	8.354675						133	4	2	NaN	NaN	NaN	0.3042	1	5660	5660		41.785	0	1	10457			5657	4379	3309	3366	4460	4460					0.00569522972057257
FNTNLTPEPT	10	Unmodified	_FNTNLTPEPT_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2773033165	2	567.277303	1132.54005	0.89191	0.00050596	4.9125	0.0027867	5.8044	0.0032927	567.2796500111151	35.553	0.096523	35.553	35.505	35.602	0.00052643	1218	40	0.8873258	0.023917377	0.8858064	359.73273	0	9.696381						67	5	2	NaN	NaN	NaN	0.74182	1	13732	13732		5.1889	0.45981	1	5146.9	+		5658	9898	3310	3367	4461	4461					-0.020914724902013404
FNWSLNLT	8	Unmodified	_FNWSLNLT_					0	0	0		ENST00000356929.3_1_19:21475855-21476059:-|nuORF	ENST00000356929.3_1_19:21475855-21476059:-|nuORF	ENST00000356929.3_1_19:21475855-21476059:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.7532671141999	2	497.753267	993.491981	1.0176	0.00050654	-3.3759	-0.0016804	-2.3583	-0.0011738	497.7515955600066	13.469	0.09601	13.459	13.435	13.531	-0.010098	1311	79	0.83019954	0.04803437	0.8286801	337.13898	0	19.50644						128	5	2	NaN	NaN	NaN	0.63138	1	8174	8174		23.334	1.4994	1	11600			5659	6572	3311	3368	4462	4462					-0.005025016195986609
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.76891717840005	2	499.768917	997.523281	1.919	0.00095907	-1.6473	-0.00082327	0.27173	0.0001358	499.7681138145557	21.633	0.14462	21.633	21.609	21.754	0	1293	67	0.84127116	0.040591657	0.84127116	341.61624	0	16.483124						323	7	5	NaN	NaN	NaN	0.0047854	1	8483	8483		103.03	61.566	1	119340			5660	499	3312	3369	4463	4463					0.024420714145321654
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.76891717840005	2	499.768917	997.523281	1.4377	0.00071851	-0.20599	-0.00010295	1.2317	0.00061556	499.7686886747509	21.657	0.1684	21.643	21.595	21.764	-0.013897	1293	73	0.84127116	0.04428661	0.8397517	341.61624	0	17.98352						305	8	4	NaN	NaN	NaN	0.0072287	1	8306	8306		98.041	59.433	1	114790			5661	499	3312	3369	4464	4464					0.024420714145321654
FPAAPIPTL	9	Unmodified	_FPAAPIPTL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.5345806356	1	926.534581	925.527304	1.8488	0.001713	-3.4484	-0.0031951	-1.5996	-0.0014821	926.5314110332189	30.318	0.096533	30.318	30.294	30.391	0	318	64	1.4304334	0.037417173	1.4304334	290.74088	0	7.605194						152	5	3	NaN	NaN	NaN	0.078597	1	6508	6508		38.918	16.792	1	21856			5662	8057	3313	3370	4465	4465					0.06156160908221864
FPAAPIPTL	9	Unmodified	_FPAAPIPTL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.5345806356	1	926.534581	925.527304	0.5791	0.00053656	-2.8312	-0.0026232	-2.2521	-0.0020867	926.5318668824767	30.317	0.1206	30.311	30.263	30.383	-0.0064087	318	64	1.4304334	0.03741324	1.428914	290.74088	0	7.60437						158	6	2	NaN	NaN	NaN	0.03623	1	6380	6380		52.758	30.632	1	28331			5663	8057	3313	3370	4466	4466					0.06156160908221864
FPAEAGRDTL	10	Unmodified	_FPAEAGRDTL_					0	0	0		ENST00000540269.6_1_16:84778297-84793504:+|nuORF;ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENST00000540269.6_1_16:84778297-84793504:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7721881488501	2	538.772188	1075.52982	1.8596	0.0010019	-2.7507	-0.001482	-0.89116	-0.00048013	538.7707414276658	18.218	0.14403	18.204	18.06	18.204	-0.01395	1272	64	0.854179	0.038698435	0.8526596	346.51532	0	15.698822						193	7	2	NaN	NaN	NaN	0.34981	1	11480	11480		25.681	0.72037	1	30890			5664	1420	3314	3371	4467	4467					-0.004920354247587966
FPAEDWAGL	9	Unmodified	_FPAEDWAGL_					0	0	0		ENSG00000127922|ENST00000248566|SEM1	ENSG00000127922|ENST00000248566|SEM1	ENSG00000127922|ENST00000248566|SEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.4676232824	1	1005.46762	1004.46035	1.7671	0.0017768	1.8386	0.0018486	3.6057	0.0036254	1005.4691102208085	29.425	0.31377	29.425	29.305	29.618	0	222	97	1.4873441	0.056844354	1.4873441	301.95975	0	11.540497						637	14	3	NaN	NaN	NaN	0.03623	1	8756	8756		52.758	26.957	1	125860			5665	2547	3315	3372	4468	4468					-0.04170494373522615
FPAEDWAGL	9	Unmodified	_FPAEDWAGL_					0	0	0		ENSG00000127922|ENST00000248566|SEM1	ENSG00000127922|ENST00000248566|SEM1	ENSG00000127922|ENST00000248566|SEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.4676232824	1	1005.46762	1004.46035	1.5396	0.001548	2.5791	0.0025932	4.1187	0.0041412	1005.4692894143429	29.424	0.38606	29.417	29.296	29.682	-0.0077209	219	91	1.4891195	0.053280234	1.4876001	302.32016	0	10.816925						860	17	5	NaN	NaN	NaN	0.014943	1	8583	8583		78.398	51.666	1	142770			5666	2547	3315	3372	4469	4469					-0.04170494373522615
FPAEFAMYL	9	Oxidation (M)	_FPAEFAM(Oxidation (M))YL_		FPAEFAM(1)YL		FPAEFAM(96)YL	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.5070452561	1	1104.50705	1103.49977	1.0092	0.0011146	-1.2686	-0.0014012	-0.25943	-0.00028654	1104.5059610622106	31.308	0.28958	31.308	31.235	31.525	0	105	79	1.5564433	0.045971036	1.5564433	315.604	0	9.321686						331	13	2	NaN	NaN	NaN	0.0081087	1	12974	12974		96.245	70.564	1	74061			5667	1928	3316	3373	4470	4470		216			-0.04784110414311726
FPAEFAMYL	9	Oxidation (M)	_FPAEFAM(Oxidation (M))YL_		FPAEFAM(1)YL		FPAEFAM(72)YL	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.5070452561	1	1104.50705	1103.49977	1.1014	0.0012165	-0.74519	-0.00082306	0.35625	0.00039348	1105.5095858598208	31.355	0.33784	31.35	31.229	31.567	-0.0050716	105	82	1.5564433	0.047726512	1.5549239	315.604	0	9.677612						487	15	3	NaN	NaN	NaN	0.020004	1	12631	12631		71.993	51.437	1	72183			5668	1928	3316	3373	4471	4471		216			-0.04784110414311726
FPAEFAMYL	9	Unmodified	_FPAEFAMYL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.512130634	1	1088.51213	1087.50485	0.85024	0.00092549	3.0571	0.0033277	3.9074	0.0042532	1088.5159887942675	34.154	0.12071	34.153	34.129	34.249	-0.0012474	69	76	1.5776473	0.044172525	1.5761279	319.96167	0	8.958618						169	6	2	NaN	NaN	NaN	0.39244	1	11958	11958		14.042	1.0388	1	14873			5669	1928	3316	3374	4472	4472					-0.035398065517028954
FPAEFAMYL	9	Unmodified	_FPAEFAMYL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.512130634	1	1088.51213	1087.50485	0.75897	0.00082614	6.2609	0.0068151	7.0199	0.0076412	1088.5205644439527	34.058	0.096577	34.056	33.984	34.08	-0.0012474	75	85	1.5741152	0.04947579	1.5725957	319.24533	0	10.034149						153	5	2	NaN	NaN	NaN	0.39244	1	11959	11959		14.042	1.0388	1	14934			5670	1928	3316	3374	4473	4473					-0.035398065517028954
FPAEFAMYL	9	Unmodified						0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1088.51213	1087.50485	1.334	0.0014521	1.7747	0.0019318	3.1087	0.0033839	1088.5148378993626	34.059	0.072422	34.059	34.01	34.083	0	81	88	1.5705823	0.05124557	1.5705823	318.52884		10.393066	0.0012187	-0.0013992	-0.0010067	NaN	14.042	182	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15742			5671	1928	3316	3374							-0.035398065517028954
FPAEFAMYL	9	Unmodified						0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1088.51213	1087.50485	1.4774	0.0016082	3.6465	0.0039692	5.1239	0.0055774	1088.5157144375798	34.155	0.072315	34.155	34.131	34.203	0	69	94	1.5776473	0.05479133	1.5776473	319.96167		11.112183	0.0012279	0.00027867	0.00075972	NaN	14.042	185	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16631			5672	1928	3316	3374							-0.035398065517028954
FPAEGVESAL	10	Unmodified	_FPAEGVESAL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5044027192001	1	1019.5044	1018.49713	2.5446	0.0025943	-2.1589	-0.002201	0.38572	0.00039324	1019.5029127204206	24.936	0.33784	24.936	24.816	25.153	0	237	64	1.4784646	0.037302017	1.4784646	300.101	0	7.5716248						356	15	2	NaN	NaN	NaN	0.25724	1	9313	9313		30.61	6.0481	1	48125			5673	5133	3317	3375	4474	4474					-0.0113824254760857
FPAEGVESAL	10	Unmodified	_FPAEGVESAL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.5044027192001	1	1019.5044	1018.49713	1.8304	0.0018662	-1.0563	-0.0010769	0.77413	0.00078923	1019.5038570354834	24.936	0.33775	24.924	24.803	25.141	-0.012392	234	61	1.4802408	0.03552389	1.4787214	300.46158	0	7.2106934						321	15	2	NaN	NaN	NaN	0.12649	1	9127	9127		42.318	11.707	1	42573			5674	5133	3317	3375	4475	4475					-0.0113824254760857
FPAEKESEW	9	Unmodified	_FPAEKESEW_					0	0	0		ENST00000539677.1_1_16:12874994-12897657:-|nuORF;nc|ENSG00000103381|Q9BRF8-3|CPPED1;nc|ENSG00000103381|Q9BRF8-2|CPPED1;ENSG00000103381|ENST00000381774|CPPED1	ENST00000539677.1_1_16:12874994-12897657:-|nuORF	ENST00000539677.1_1_16:12874994-12897657:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7587464226	2	561.758746	1121.50294	1.6638	0.00093466	-0.92274	-0.00051836	0.74107	0.0004163	561.7584063592511	18.818	0.12006	18.804	18.756	18.876	-0.014059	1221	55	0.885486	0.03312534	0.88396657	359.02936	0	13.431						152	6	3	NaN	NaN	NaN	0.010878	1	13328	13328		90.252	48.467	1	21948			5675	1438	3318	3376	4476	4476					-0.052951440359720436
FPAEKESEW	9	Unmodified						0	0	0		ENST00000539677.1_1_16:12874994-12897657:-|nuORF;nc|ENSG00000103381|Q9BRF8-3|CPPED1;nc|ENSG00000103381|Q9BRF8-2|CPPED1;ENSG00000103381|ENST00000381774|CPPED1	ENST00000539677.1_1_16:12874994-12897657:-|nuORF	ENST00000539677.1_1_16:12874994-12897657:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.758746	1121.50294	2.0959	0.0011774	0.89452	0.0005025	2.9905	0.0016799	561.7587181437309	18.82	0.072044	18.82	18.796	18.868	0	1218	52	0.8873258	0.031286716	0.8873258	359.7753		12.685486	0.0083501	0.001338	0.0016796	NaN	90.252	100	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11876			5676	1438	3318	3376							-0.052951440359720436
FPAEPLEL	8	Unmodified	_FPAEPLEL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.4822107141	1	915.482211	914.474934	1.4277	0.0013071	-1.2169	-0.0011141	0.21079	0.00019298	915.4816090417879	29.183	0.362	29.175	29.055	29.417	-0.0077209	357	136	1.407258	0.08020544	1.4057386	286.08105	0	16.304962						614	16	3	NaN	NaN	NaN	0.034452	1	6192	6192		101.55	48.796	1	96630			5677	1712	3319	3377	4477	4477					0.0142757777460929
FPAEQVDDL	9	Unmodified	_FPAEQVDDL_					0	0	0		LRBA-SH3D19|4|fusion;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;LRBA-SH3D19|3|fusion;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENSG00000109686|ENST00000604030|SH3D19	LRBA-SH3D19|4|fusion	LRBA-SH3D19|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.4836672770998	1	1033.48367	1032.47639	1.5932	0.0016466	-1.1984	-0.0012385	0.39487	0.00040809	1033.4817972341289	24.092	0.048244	24.092	24.068	24.116	0	201	43	1.4997677	0.024840355	1.4997677	304.3701	0	5.0412292						44	3	2	NaN	NaN	NaN	0.026469	1	9872	9872		63.731	32.055	1	4247.6			5678	1730	3320	3378	4478	4478					-0.03854832927299867
FPAEQVDDL	9	Unmodified	_FPAEQVDDL_					0	0	0		LRBA-SH3D19|4|fusion;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;LRBA-SH3D19|2|fusion;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;LRBA-SH3D19|3|fusion;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;ENSG00000109686|ENST00000604030|SH3D19	LRBA-SH3D19|4|fusion	LRBA-SH3D19|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.4836672770998	1	1033.48367	1032.47639	1.353	0.0013983	2.8463	0.0029416	4.1993	0.00434	1033.487964123458	24.236	0.24128	24.224	24.031	24.272	-0.012747	204	82	1.4979934	0.04792428	1.496474	304.00998	0	9.725983						238	11	2	NaN	NaN	NaN	0.13999	1	9666	9666		30.035	2.7392	1	22316			5679	1730	3320	3378	4479	4479					-0.03854832927299867
FPAETVELL	9	Unmodified	_FPAETVELL_					0	0	0		ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5455392524001	1	1018.54554	1017.53826	2.7062	0.0027564	-0.23033	-0.0002346	2.4759	0.0025218	1018.5469505205755	29.98	0.19312	29.98	29.956	30.149	0	153	103	1.5281296	0.060269117	1.5281296	310.18597	0	12.233673						400	9	3	NaN	NaN	NaN	0.043119	1	9279	9279		49.833	13.246	1	37028			5680	3158	3321	3379	4480	4480					0.030195184918625273
FPAGDCFRK	9	Unmodified	_FPAGDCFRK_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7527441854501	2	520.752744	1039.49094	2.0854	0.001086	3.2875	0.001712	5.3729	0.002798	520.7539857535978	18.125	0.095999	18.125	18.101	18.197	0	1299	49	0.8375814	0.029521227	0.8375814	339.93106	0	11.98114						105	5	2	NaN	NaN	NaN	0.51576	1	10181	10181		8.962	1.3744	1	9588.5			5681	5610;5819	3322	3380	4481	4481					-0.02723039260126825
FPAGDCFRK	9	Unmodified						0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.752744	1039.49094	2.1566	0.0011231	7.3238	0.0038139	9.4804	0.004937	520.7540451917389	18.17	0.14399	18.156	18.108	18.252	-0.01395	1302	49	0.8357362	0.029521227	0.8342168	339.18216		11.98114	0.015519	0.0021853	-0.0016823	NaN	8.962	120	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8829.6			5682	5610;5819	3322	3380							-0.02723039260126825
FPAGYMYPSM	10	Unmodified	_FPAGYMYPSM_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.248645725	2	582.248646	1162.48274	2.0486	0.0011928	-1.3871	-0.00080763	0.66154	0.00038518	582.2483465424224	27.664	0.57921	27.664	27.374	27.953	0	1203	88	0.8965218	0.053354144	0.8965218	363.3483	0	21.623718						664	25	5	NaN	NaN	NaN	0.21269	1	15219	15219		34.439	12.312	1	163930			5683	1474	3323	3381	4482	4482					-0.09200354291783697
FPAGYMYPSM	10	Unmodified	_FPAGYMYPSM_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1163.4900149833998	1	1163.49001	1162.48274	2.5196	0.0029315	-0.9904	-0.0011523	1.5292	0.0017792	1163.487626773784	27.543	0.1931	27.543	27.422	27.615	0	63	64	1.5811787	0.03708136	1.5811787	320.41855	0	7.5143433						222	9	3	NaN	NaN	NaN	0.15427	1	15220	15220		39.459	24.446	1	16494			5684	1474	3323	3381	4483	4483					-0.09200354291783697
FPAGYMYPSM	10	Unmodified	_FPAGYMYPSM_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.248645725	2	582.248646	1162.48274	1.554	0.00090484	-2.0904	-0.0012171	-0.53631	-0.00031226	582.7490850446827	27.615	0.53096	27.605	27.364	27.895	-0.009552	1203	88	0.8965218	0.053354144	0.89500237	363.3483	0	21.623718						765	23	4	NaN	NaN	NaN	0.36718	1	14701	14701		24.961	7.162	1	183030			5685	1474	3323	3381	4484	4484					-0.09200354291783697
FPAGYMYPSM	10	Unmodified	_FPAGYMYPSM_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1163.4900149833998	1	1163.49001	1162.48274	2.0867	0.0024279	0.78263	0.00091058	2.8694	0.0033385	1163.490008144455	27.783	0.096535	27.774	27.75	27.846	-0.009552	60	61	1.582944	0.03531742	1.5814246	320.77628	0	7.1569214						85	5	2	NaN	NaN	NaN	0.40641	1	14702	14702		23.334	9.2928	1	6068.3			5686	1474	3323	3381	4485	4485					-0.09200354291783697
FPAGYMYPSM	10	Unmodified	_FPAGYMYPSM_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1163.4900149833998	1	1163.49001	1162.48274	1.7953	0.0020888	5.3923	0.0062739	7.1876	0.0083627	1163.4969483561035	27.663	0.1689	27.653	27.557	27.726	-0.009552	63	67	1.5811787	0.038853288	1.5796592	320.41852	0	7.8734436						219	8	3	NaN	NaN	NaN	0.010516	1	14703	14703		70.6	41.001	1	19182			5687	1474	3323	3381	4486	4486					-0.09200354291783697
FPAGYMYPSM	10	Oxidation (M)	_FPAGYMYPSM(Oxidation (M))_		FPAGYMYPSM(1)		FPAGYM(-43)YPSM(43)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2461030360499	2	590.246103	1178.47765	1.4731	0.00086951	-1.4417	-0.00085095	0.031439	1.8557E-05	590.2452842903543	24.381	0.45828	24.381	24.237	24.695	0	1191	100	0.90387505	0.060647786	0.90387505	366.27017	0	24.575836						605	20	4	NaN	NaN	NaN	0.071906	1	15762	15762		49.833	34.011	2	139450			5688	1474	3323	3382	4487	4487		166;167			-0.10444658154415265
FPAGYMYPSM	10	Oxidation (M)	_FPAGYM(Oxidation (M))YPSM_		FPAGYM(0.998)YPSM(0.002)		FPAGYM(28)YPSM(-28)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2461030360499	2	590.246103	1178.47765	1.6453	0.00097114	-1.0081	-0.00059503	0.63721	0.00037611	590.2453420159441	24.985	0.048265	24.985	24.96	25.009	0	1200	82	0.89836043	0.04962623	0.89836043	364.03552	0	20.10968						121	3	2	NaN	NaN	NaN	0.13037	1	15764	15764		41.785	26.772	2	51707			5689	1474	3323	3382	4488	4488		166;167			-0.10444658154415265
FPAGYMYPSM	10	Oxidation (M)	_FPAGYMYPSM(Oxidation (M))_		FPAGYM(0.002)YPSM(0.998)		FPAGYM(-28)YPSM(28)	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1179.4849296054997	1	1179.48493	1178.47765	2.3679	0.0027929	-0.37447	-0.00044168	1.9934	0.0023512	1179.4847001179974	24.261	0.19309	24.261	24.164	24.357	0	60	70	1.582944	0.0406214	1.582944	320.72516	0	8.230438						243	9	3	NaN	NaN	NaN	0.13037	1	15766	15766		41.785	25.963	2	16620			5690	1474	3323	3382	4489	4489		166;167			-0.10444658154415265
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(62)YPSM(62)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2435603471	2	598.24356	1194.47257	1.8982	0.0011356	-1.6533	-0.0009891	0.2449	0.00014651	598.2426240828589	21.537	1.0119	21.537	21.151	22.163	0	1218	97	0.8873258	0.058863997	0.8873258	359.50833	0	23.849304						2124	43	3	NaN	NaN	NaN	0.024145	1	16278	16278		61.977	42.813	1	691530			5691	1474	3323	3383	4490	4490		166;167			-0.11688962017001359
FPAGYMYPSM	10	2 Oxidation (M)	_FPAGYM(Oxidation (M))YPSM(Oxidation (M))_		FPAGYM(1)YPSM(1)		FPAGYM(81)YPSM(81)	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.2435603471	2	598.24356	1194.47257	1.7762	0.0010626	-1.872	-0.0011199	-0.095801	-5.7313E-05	598.2425383556259	21.585	0.81861	21.571	21.162	21.98	-0.013895	1218	97	0.8873258	0.05885768	0.8858064	359.50833	0	23.84671						2136	35	4	NaN	NaN	NaN	0.0035994	1	15647	15647		80.639	57.553	1	684780			5692	1474	3323	3383	4491	4491		166;167			-0.11688962017001359
FPAHILDCL	9	Unmodified	_FPAHILDCL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.76532024445	2	514.76532	1027.51609	1.8951	0.00097551	-2.0245	-0.0010422	-0.12948	-6.665E-05	514.7637979960213	28.605	0.096535	28.605	28.532	28.629	0	1269	43	0.8560222	0.025803149	0.8560222	347.46814	0	10.473755						139	5	3	NaN	NaN	NaN	0.094712	1	9668	9668		36.586	14.751	1	11825			5693	13662	3324	3384	4492	4492					0.003430155424211989
FPAHILDCL	9	Unmodified	_FPAHILDCL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.76532024445	2	514.76532	1027.51609	1.8922	0.00097406	-1.4971	-0.00077064	0.39516	0.00020341	514.7644469298851	28.822	0.14482	28.822	28.798	28.943	0	1263	70	0.85970795	0.042393148	0.85970795	348.96423	0	17.207825						190	7	2	NaN	NaN	NaN	0.20577	1	9669	9669		24.961	2.8347	1	44675			5694	13662	3324	3384	4493	4493					0.003430155424211989
FPAHILDCL	9	Unmodified						0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.76532	1027.51609	0.99214	0.00051072	0.10916	5.6193E-05	1.1013	0.00056691	514.7655857023622	28.845	0.21721	28.837	28.789	29.006	-0.0083504	1263	52	0.85970795	0.031327307	0.8581885	348.96423		12.716064	0.0075112	0.0012058	-0.00075972	NaN	24.961	205	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45831			5695	13662	3324	3384							0.003430155424211989
FPALDGGDAL	10	Unmodified	_FPALDGGDAL_					0	0	0		nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B;nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-6|PPARGC1B	nc|ENSG00000155846|Q86YN6-6|PPARGC1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4781879687001	1	975.478188	974.470912	1.6624	0.0016216	3.9708	0.0038735	5.6332	0.0054951	975.4832712677468	27.398	0.072439	27.398	27.326	27.398	0	306	82	1.4375578	0.048051715	1.4375578	291.97372	0	9.75946						81	4	2	NaN	NaN	NaN	0.47601	1	7732	7732		20.449	6.0236	1	5877.5			5696	3889	3325	3385	4494	4494					-0.01734511719087095
FPALISSMPN	10	Unmodified	_FPALISSMPN_					0	0	0		ENST00000482382.1_1_3:151836255-151869472:-|nuORF	ENST00000482382.1_1_3:151836255-151869472:-|nuORF	ENST00000482382.1_1_3:151836255-151869472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7758849307501	2	538.775885	1075.53722	2.3593	0.0012711	-9.3669	-0.0050467	-7.0076	-0.0037755	538.7709891617192	18.245	0.21582	18.245	18.077	18.292	0	1269	61	0.8560222	0.03685367	0.8560222	347.26303	0	14.95047						307	10	3	NaN	NaN	NaN	0.14619	1	11790	11790		40.154	6.2465	1	49734			5697	7213	3326	3386	4495	4495					0.002469808513069438
FPALISSMPN	10	Unmodified						0	0	0		ENST00000482382.1_1_3:151836255-151869472:-|nuORF	ENST00000482382.1_1_3:151836255-151869472:-|nuORF	ENST00000482382.1_1_3:151836255-151869472:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.775885	1075.53722	1.9107	0.0010294	-9.2899	-0.0050052	-7.3793	-0.0039758	538.7714630573612	18.29	0.19205	18.276	18.252	18.444	-0.01395	1269	85	0.8560222	0.051606297	0.85450274	347.26303		20.93515	0.015505	3.5207E-05	-0.00075972	NaN	40.154	308	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44157			5698	7213	3326	3386							0.002469808513069438
FPALTLLSL	9	Unmodified	_FPALTLLSL_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5920955145001	1	974.592096	973.584819	1.1182	0.0010898	-1.9455	-0.0018961	-0.82731	-0.00080629	974.5890094275322	35.506	0.096519	35.506	35.482	35.578	0	213	91	1.4926696	0.05325198	1.4926696	303.17102	0	10.815826						179	5	3	NaN	NaN	NaN	0.032417	1	7718	7718		55.947	11.645	1	17866	+		5699	8380	3327	3387	4496	4496					0.09697003113808478
FPALTLLSL	9	Unmodified						0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	974.592096	973.584819	1.1182	0.0010898	-1.9455	-0.0018961	-0.82731	-0.00080629	974.5890094275322	35.506	0.096519	35.506	35.482	35.578	0	213	91	1.4926696	0.05325198	1.4926696	303.17102		10.815826	0.00048854	0.00054084	0.00075972	NaN	55.947	179	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17866	+		5700	8380	3327	3387							0.09697003113808478
FPALTLLSL	9	Unmodified						0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.592096	973.584819	0.83689	0.00081563	-3.3683	-0.0032827	-2.5314	-0.0024671	974.5896169714947	35.505	0.16891	35.505	35.433	35.602	0.00052643	213	91	1.4926696	0.05324638	1.4911501	303.17102		10.814697	-0.00048854	-0.00084577	-0.00075972	NaN	55.947	207	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20057	+		5701	8380	3327	3387							0.09697003113808478
FPALTSLDL	9	Unmodified	_FPALTSLDL_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5349745661	1	976.534975	975.527698	2.5934	0.0025325	-0.67232	-0.00065654	1.9211	0.001876	976.535432822394	32.61	0.048267	32.607	32.583	32.631	-0.0031052	204	37	1.4979934	0.021293998	1.496474	304.24387	0	4.324829						32	3	2	NaN	NaN	NaN	0.3389	1	7615	7615		16.417	3.8288	1	1890.4			5702	4728	3328	3388	4497	4497					0.038955358374209936
FPALVVKA	8	Unmodified	_FPALVVKA_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000488791.1_1_21:34904635-34906961:-|nuORF;ENST00000497313.5_1_21:34903034-34906961:-|nuORF;ENST00000476524.1_1_21:34903719-34911621:-|nuORF;nc|ENSG00000159131|P22102-2|GART	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.5291013272	1	844.529101	843.521825	1.7233	0.0014554	-4.1546	-0.0035087	-2.4314	-0.0020534	844.5254213470574	55.124	0.12042	55.124	55.076	55.196	0	399	43	1.382264	0.025015235	1.382264	281.3503	0	5.091675						83	6	2	NaN	NaN	NaN	0.84876	1	5322	5322		0.39566	0	1	6948.3			5703	4014	3329	3389	4498	4498					0.09380482116409894
FPANVMDVI	9	Unmodified	_FPANVMDVI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.25732803684997	2	503.257328	1004.5001	0.86475	0.00043519	-3.4952	-0.001759	-2.6304	-0.0013238	503.25537346037504	31.452	0.26551	31.452	31.356	31.621	0	1293	67	0.84127116	0.040596068	0.84127116	341.58398	0	16.483337						290	12	3	NaN	NaN	NaN	0.12945	1	8761	8761		31.561	18.558	1	30470			5704	1688	3330	3390	4499	4499					-0.001966906944630864
FPANVMDVI	9	Unmodified	_FPANVMDVI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.5073796071	1	1005.50738	1004.5001	1.4947	0.0015029	-0.45625	-0.00045876	1.0385	0.0010442	1005.5071308934122	31.452	0.31377	31.452	31.308	31.621	0	228	178	1.4837929	0.10486817	1.4837929	301.23862	0	21.290253						1369	14	5	NaN	NaN	NaN	0.0018626	1	8763	8763		111.43	55.486	1	578830			5705	1688	3330	3390	4500	4500					-0.001966906944630864
FPANVMDVI	9	Unmodified	_FPANVMDVI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.25732803684997	2	503.257328	1004.5001	0.63574	0.00031994	-2.7847	-0.0014014	-2.149	-0.0010815	503.2559765976665	31.451	0.24133	31.447	31.375	31.616	-0.0044155	1293	73	0.84127116	0.04428661	0.8397517	341.58395	0	17.981842						382	11	3	NaN	NaN	NaN	0.062072	1	8586	8586		41.785	22.621	1	44309			5706	1688	3330	3390	4501	4501					-0.001966906944630864
FPANVMDVI	9	Unmodified	_FPANVMDVI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5073796071	1	1005.50738	1004.5001	1.601	0.0016098	-0.86226	-0.00086701	0.73869	0.00074276	1005.5067527915156	31.451	0.36196	31.447	31.326	31.688	-0.0044155	228	175	1.4837929	0.10303056	1.4822735	301.23862	0	20.917206						1380	16	5	NaN	NaN	NaN	0.0062755	1	8587	8587		99.986	49.953	1	557440			5707	1688	3330	3390	4502	4502					-0.001966906944630864
FPANVMDVI	9	Unmodified	_FPANVMDVI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5073796071	1	1005.50738	1004.5001	1.1739	0.0011804	2.5441	0.0025581	3.718	0.0037385	1005.5098445445349	32.296	0.09655	32.292	32.244	32.341	-0.0037613	219	58	1.4891195	0.03373158	1.4876001	302.32	0	6.848175						111	5	2	NaN	NaN	NaN	0.41766	1	8588	8588		13.003	0.95414	1	8606.8			5708	1688	3330	3390	4503	4503					-0.001966906944630864
FPANVMDVI	9	Unmodified						0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1005.50738	1004.5001	2.8159	0.0028314	0.15279	0.00015363	2.9687	0.002985	1005.5119758152183	31.283	0.096556	31.277	31.229	31.326	-0.0050716	225	22	1.4855686	0.012432694	1.4840492	301.59912		2.5240784	-0.08752	0.00058842	0.00012814	NaN	111.43	22	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472			5709	1688	3330	3390							-0.001966906944630864
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(50)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.2547853479	2	511.254785	1020.49502	2.0311	0.0010384	-2.9583	-0.0015125	-0.92725	-0.00047406	511.25348470759434	27.157	0.45848	27.157	26.915	27.374	0	1314	91	0.8283535	0.05538225	0.8283535	336.26773	0	22.48227						972	20	3	NaN	NaN	NaN	0.043119	1	9380	9380		49.833	13.246	1	351670			5710	1688	3330	3391	4504	4504		189			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(76)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5022942292001	1	1021.50229	1020.49502	2.6618	0.0027191	-1.1616	-0.0011866	1.5002	0.0015325	1021.501208779989	27.133	0.53089	27.133	26.891	27.422	0	246	160	1.4731345	0.094133615	1.4731345	299.0113	0	19.106903						1343	23	3	NaN	NaN	NaN	0.017076	1	9381	9381		75.698	48.967	1	446290			5711	1688	3330	3391	4505	4505		189			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(59)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.2547853479	2	511.254785	1020.49502	1.405	0.0007183	-2.5235	-0.0012902	-1.1186	-0.00057188	511.2536509772078	27.156	0.45855	27.146	26.929	27.387	-0.010126	1311	88	0.83019954	0.053533256	0.8286801	337.01712	0	21.73169						1030	20	4	NaN	NaN	NaN	0.030391	1	9189	9189		58.599	27.038	1	369110			5712	1688	3330	3391	4506	4506		189			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(58)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5022942292001	1	1021.50229	1020.49502	1.9526	0.0019946	-1.5183	-0.001551	0.43425	0.00044359	1021.5008251340928	27.156	0.55511	27.146	26.856	27.411	-0.010126	243	139	1.4749115	0.081679225	1.473392	299.37195	0	16.578918						1235	24	3	NaN	NaN	NaN	0.030669	1	9190	9190		58.235	36.109	1	398860			5713	1688	3330	3391	4507	4507		189			-0.014409945570719174
FPANYVEVL	9	Unmodified	_FPANYVEVL_					0	0	0		ENSG00000120896|ENST00000240123|SORBS3;nc|ENSG00000120896|O60504-2|SORBS3	ENSG00000120896|ENST00000240123|SORBS3	ENSG00000120896|ENST00000240123|SORBS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5458736034	1	1051.54587	1050.5386	2.1029	0.0022113	-0.85803	-0.00090226	1.2449	0.001309	1051.5455432864262	29.136	0.26552	29.136	28.991	29.256	0	210	88	1.4944444	0.05144143	1.4944444	303.221	0	10.437408						435	12	3	NaN	NaN	NaN	0.13602	1	10651	10651		30.61	8.7751	1	51609			5714	2277	3331	3392	4508	4508					0.015349382117165078
FPANYVEVL	9	Unmodified	_FPANYVEVL_					0	0	0		ENSG00000120896|ENST00000240123|SORBS3;nc|ENSG00000120896|O60504-2|SORBS3	ENSG00000120896|ENST00000240123|SORBS3	ENSG00000120896|ENST00000240123|SORBS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5458736034	1	1051.54587	1050.5386	1.3835	0.0014548	-0.85638	-0.00090052	0.5271	0.00055427	1051.5452288465897	29.111	0.28959	29.103	29.007	29.296	-0.0077209	207	97	1.496219	0.056753874	1.4946996	303.58105	0	11.51532						456	13	3	NaN	NaN	NaN	0.032689	1	10429	10429		55.592	12.597	1	54368			5715	2277	3331	3392	4509	4509					0.015349382117165078
FPAPFTWV	8	Unmodified	_FPAPFTWV_					0	0	0		ENSG00000131183|ENST00000324417|SLC34A1	ENSG00000131183|ENST00000324417|SLC34A1	ENSG00000131183|ENST00000324417|SLC34A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.74999614374997	2	482.749996	963.485439	2.1272	0.0010269	0.19117	9.2287E-05	2.3184	0.0011192	482.7499468323186	17.837	0.16787	17.837	17.789	17.957	0	1347	49	0.8080346	0.029575586	0.8080346	328.27747	0	12.015564						160	8	3	NaN	NaN	NaN	0.80071	1	7429	7429		9.1232	0	1	13751			5716	2696	3332	3393	4510	4510					0.002236052196963101
FPASAVTL	8	Unmodified	_FPASAVTL_					0	0	0		TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant;ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4454312773001	1	805.445431	804.438155	2.1703	0.0017481	7.0047	0.0056419	9.175	0.00739	805.4505806513771	25.322	0.26544	25.322	25.202	25.467	0	498	82	1.3232021	0.04842651	1.3232021	269.53833	0	9.864563						278	12	3	NaN	NaN	NaN	0.45125	1	4801	4801		33.698	6.9667	1	26897			5717	4938	3333	3394	4511	4511					0.028113259487213327
FPASSVEVI	9	Unmodified	_FPASSVEVI_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5036744377002	1	948.503674	947.496398	2.1192	0.0020101	-2.2037	-0.0020902	-0.084482	-8.0131E-05	948.5017440178624	26.215	0.16894	26.215	26.07	26.239	0	354	58	1.4090419	0.033878922	1.4090419	286.29562	0	6.883667						173	8	2	NaN	NaN	NaN	0.043119	1	7019	7019		49.833	26.498	1	14979			5718	3918	3334	3395	4512	4512					0.020549628033450063
FPASSVEVI	9	Unmodified	_FPASSVEVI_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5036744377002	1	948.503674	947.496398	2.31	0.0021911	-1.2943	-0.0012276	1.0158	0.00096345	948.5016664506738	26.167	0.072411	26.156	26.083	26.156	-0.011135	351	43	1.4108255	0.024967432	1.409306	286.65802	0	5.0729675						66	4	2	NaN	NaN	NaN	0.12945	1	6889	6889		31.561	8.2266	1	5146.9			5719	3918	3334	3395	4513	4513					0.020549628033450063
FPASYFDEM	9	Unmodified	_FPASYFDEM_					0	0	0		VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.4499243076998	1	1106.44992	1105.44265	1.8737	0.0020732	2.1426	0.0023707	4.0163	0.0044439	1106.4517017126873	28.243	0.12063	28.243	28.219	28.339	0	132	73	1.5405227	0.042461753	1.5405227	312.36893	0	8.609894						161	6	2	NaN	NaN	NaN	0.16171	1	13060	13060		27.789	8.6252	1	12272			5720	1779	3335	3396	4514	4514					-0.1058557769069921
FPATPLLDYAL	11	Unmodified	_FPATPLLDYAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8317144004502	2	610.831714	1219.64888	0.53204	0.00032499	-1.4696	-0.00089766	-0.93753	-0.00057267	610.8308462025441	34.951	0.096378	34.951	34.903	34.999	0	1146	46	0.93142134	0.027528465	0.93142134	377.2851	0	11.150818						95	5	2	NaN	NaN	NaN	0.51407	1	16974	16974		17.97	6.2308	1	7640.1			5721	2711	3336	3397	4515	4515					0.047837384801141525
FPATVLWEL	9	Unmodified	_FPATVLWEL_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5822591096999	1	1075.58226	1074.57498	1.226	0.0013187	0.17652	0.00018986	1.4026	0.0015086	1075.5820159792472	35.699	0.21701	35.699	35.603	35.82	0	102	85	1.5582114	0.04950726	1.5582114	316.06757	0	10.042053						588	10	4	NaN	NaN	NaN	0.0081087	1	11756	11756		96.245	49.11	1	88930			5722	3874	3337	3398	4516	4516					0.040678151084193814
FPATVLWEL	9	Unmodified	_FPATVLWEL_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5822591096999	1	1075.58226	1074.57498	1.1838	0.0012733	-0.047871	-5.1489E-05	1.136	0.0012218	1075.5823226928717	35.673	0.24104	35.674	35.602	35.843	0.00053024	99	82	1.5599792	0.04773152	1.5584598	316.42615	0	9.681885						542	11	3	NaN	NaN	NaN	0.021105	1	11450	11450		70.6	25.435	1	89510			5723	3874	3337	3398	4517	4517					0.040678151084193814
FPATWSQK	8	Unmodified	_FPATWSQK_					0	0	0			REV__ENST00000338910.8_1_13:20346580-20346667:-|nuORF	REV__ENST00000338910.8_1_13:20346580-20346667:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.74798477105	2	482.747985	963.481417	2.3221	0.001121	3.9686	0.0019158	6.2907	0.0030368	482.75018905153576	17.81	0.16785	17.796	17.676	17.844	-0.013784	1344	55	0.8098828	0.033268988	0.8083634	329.02832	0	13.516052						170	8	3	NaN	NaN	NaN	0.55996	1	7277	7277		27.789	4.4544	1	18570	+		5724	11774	3338	3399	4518	4518					-0.0017848427399940192
FPATWSQK	8	Unmodified						0	0	0			REV__ENST00000338910.8_1_13:20346580-20346667:-|nuORF	REV__ENST00000338910.8_1_13:20346580-20346667:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.747985	963.481417	2.3221	0.001121	3.9686	0.0019158	6.2907	0.0030368	482.75018905153576	17.81	0.16785	17.796	17.676	17.844	-0.013784	1344	55	0.8098828	0.033268988	0.8083634	329.02832		13.516052	-0.020451	-0.00015207	0.00016437	NaN	27.789	170	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18570	+		5725	11774	3338	3399							-0.0017848427399940192
FPAVDSVL	8	Unmodified	_FPAVDSVL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4559959636	1	847.455996	846.448719	1.831	0.0015517	-1.5916	-0.0013489	0.23937	0.00020286	847.4548413804202	27.953	0.28955	27.953	27.857	28.146	0	438	70	1.359022	0.041138172	1.359022	276.60422	0	8.372894						349	13	3	NaN	NaN	NaN	0.23389	1	5344	5344		47.321	11.285	1	31512			5726	2494	3339	3400	4519	4519					0.01935308603140129
FPAVDSVL	8	Unmodified	_FPAVDSVL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4559959636	1	847.455996	846.448719	1.765	0.0014958	-0.74921	-0.00063492	1.0158	0.00086084	847.4557359383624	28.363	0.09647	28.363	28.315	28.412	0	453	46	1.3500742	0.02684927	1.3500742	274.78305	0	5.4646606						111	5	3	NaN	NaN	NaN	0.23389	1	5345	5345		47.321	14.184	1	10573			5727	2494	3339	3400	4520	4520					0.01935308603140129
FPAVDSVL	8	Unmodified	_FPAVDSVL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.4559959636	1	847.455996	846.448719	0.89687	0.00076005	-1.4312	-0.0012128	-0.53429	-0.00045279	847.4551285677393	28.363	0.12067	28.354	28.305	28.426	-0.0089779	450	58	1.3518641	0.034001708	1.3503447	275.14734	0	6.9204407						120	6	2	NaN	NaN	NaN	0.15767	1	5209	5209		53.324	22.533	1	11654			5728	2494	3339	3400	4521	4521					0.01935308603140129
FPAVDSVL	8	Unmodified						0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	847.455996	846.448719	0.795	0.00067373	-3.3592	-0.0028468	-2.5642	-0.002173	847.4526032638724	28.025	0.2413	28.016	27.871	28.112	-0.0089779	435	64	1.360811	0.03756082	1.3592916	276.96832		7.6448364	0.031336	-0.0010807	0.00013478	NaN	47.321	275	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32816			5729	2494	3339	3400							0.01935308603140129
FPAVGMHSL	9	Oxidation (M)	_FPAVGM(Oxidation (M))HSL_		FPAVGM(1)HSL		FPAVGM(50)HSL	0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.74184514815	2	487.741845	973.469137	1.8465	0.00090062	0.070594	3.4431E-05	1.9171	0.00093505	487.74202224955656	19.468	0.095976	19.468	19.468	19.564	0	1311	73	0.83019954	0.044320166	0.83019954	337.23364	0	18.003204						155	5	3	NaN	NaN	NaN	0.043119	1	7697	7697		49.833	18.272	1	23457			5730	4568	3340	3401	4522	4522		487			-0.01865844008705153
FPAVGMHSL	9	Oxidation (M)						0	0	1		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	487.741845	973.469137	1.4228	0.00069395	-1.0201	-0.00049757	0.40263	0.00019638	487.74172084745965	19.515	0.14445	19.5	19.452	19.597	-0.014141	1311	46	0.83019954	0.027692616	0.8286801	337.23364		11.248962	0.016138	-0.00036861	-0.00075972	NaN	49.833	167	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24847			5731	4568	3340	3401				487			-0.01865844008705153
FPAVGMHSL	9	Unmodified	_FPAVGMHSL_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.74438783709996	2	479.744388	957.474223	1.4611	0.00070093	-2.6367	-0.0012649	-1.1756	-0.00056399	479.7431539932747	22.5	0.12061	22.486	22.462	22.583	-0.013731	1302	40	0.8357362	0.023987234	0.8342168	339.5617	0	9.746094						99	6	2	NaN	NaN	NaN	0.17818	1	7134	7134		26.732	10.315	1	18387			5732	4568	3340	3402	4523	4523					-0.0062154014608495345
FPAYERVLL	9	Unmodified	_FPAYERVLL_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.31349185755	2	554.313492	1106.61243	2.0267	0.0011234	-1.673	-0.00092736	0.3537	0.00019606	554.3127995963945	25.636	0.28951	25.636	25.564	25.853	0	1215	91	0.8891654	0.05518502	0.8891654	360.5801	0	22.378998						436	13	3	NaN	NaN	NaN	0.017558	1	13142	13142		75.089	33.304	1	226580			5733	2205	3341	3403	4524	4524					0.0633890637402601
FPAYERVLL	9	Unmodified	_FPAYERVLL_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.31349185755	2	554.313492	1106.61243	2.2935	0.0012713	-2.141	-0.0011868	0.15244	8.4499E-05	554.3124390303503	25.66	0.31367	25.648	25.552	25.865	-0.011602	1218	79	0.8873258	0.04784769	0.8858064	359.8341	0	19.403503						398	14	3	NaN	NaN	NaN	0.041983	1	12773	12773		50.315	10.856	1	226770			5734	2205	3341	3403	4525	4525					0.0633890637402601
FPAYERVVL	9	Unmodified	_FPAYERVVL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3056668254501	2	547.305667	1092.59678	1.4661	0.00080239	-1.0793	-0.00059072	0.38677	0.00021168	547.3053076946704	24.092	0.26546	24.092	24.019	24.285	0	1239	76	0.87444305	0.0460099	0.87444305	354.66574	0	18.661133						359	12	3	NaN	NaN	NaN	0.19268	1	12512	12512		25.801	3.966	1	121970			5735	1461	3342	3404	4526	4526					0.05418619857005069
FPAYERVVL	9	Unmodified	_FPAYERVVL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3056668254501	2	547.305667	1092.59678	1.6124	0.00088249	-1.5658	-0.00085695	0.046679	2.5548E-05	547.305076993251	24.116	0.31371	24.103	24.031	24.344	-0.012749	1239	76	0.87444305	0.0460099	0.8729236	354.66574	0	18.661163						412	14	4	NaN	NaN	NaN	0.077759	1	12198	12198		39.039	14.477	1	119340			5736	1461	3342	3404	4527	4527					0.05418619857005069
FPCYLSPEI	9	Unmodified	_FPCYLSPEI_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.75716086135	2	534.757161	1067.49977	0.76478	0.00040897	-2.2844	-0.0012216	-1.5196	-0.00081262	534.7559690376941	29.159	0.2896	29.151	29.031	29.32	-0.0077209	1266	70	0.85786515	0.04237944	0.8563457	348.04376	0	17.193726						290	13	2	NaN	NaN	NaN	0.36492	1	11165	11165		15.175	0.75036	1	36868	+		5737	8438	3343	3405	4528	4528					-0.03128110414309049
FPDAIRLRF	9	Unmodified	_FPDAIRLRF_					0	0	0		ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.82455807035	2	567.824558	1133.63456	1.6492	0.00093645	-2.6642	-0.0015128	-1.015	-0.00057635	567.8230570232631	24.695	0.24125	24.695	24.623	24.864	0	1137	43	0.9369253	0.025683582	0.9369253	379.83658	0	10.4122925						218	11	2	NaN	NaN	NaN	0.13602	1	14235	14235		30.61	6.0481	1	33543			5738	1441	3344	3406	4529	4529					0.07309130842440936
FPDAIRLRF	9	Unmodified	_FPDAIRLRF_					0	0	0		ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.8854642024333	3	378.885464	1133.63456	1.4202	0.00053808	-2.0825	-0.00078901	-0.6623	-0.00025093	379.2188335130517	24.719	0.26538	24.719	24.623	24.888	0	1434	58	0.75435036	0.035237312	0.75435036	458.72412	0	21.427979						279	12	4	NaN	NaN	NaN	0.33629	1	14236	14236		10.965	3.8347	1	42046			5739	1441	3344	3406	4530	4530					0.07309130842440936
FPDAIRLRF	9	Unmodified	_FPDAIRLRF_					0	0	0		ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.82455807035	2	567.824558	1133.63456	1.1073	0.00062876	-1.6768	-0.00095212	-0.56948	-0.00032336	567.8238636169647	24.815	0.16888	24.803	24.682	24.851	-0.012394	1140	43	0.93509084	0.025683582	0.9335714	379.09286	0	10.4122925						172	8	3	NaN	NaN	NaN	0.19268	1	13778	13778		25.801	14.631	1	23621			5740	1441	3344	3406	4531	4531					0.07309130842440936
FPDAKDWLP	9	Unmodified	_FPDAKDWLP_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.77419952155	2	544.7742	1087.53385	1.255	0.00068371	-2.7974	-0.0015239	-1.5423	-0.00084022	544.7728490137868	27.253	0.21722	27.253	27.181	27.398	0	1281	97	0.84864825	0.058934033	0.84864825	344.2236	0	23.90445						231	10	2	NaN	NaN	NaN	0.29341	1	12279	12279		19.336	3.8738	1	27084			5741	4480	3345	3407	4532	4532					-0.00641945931056398
FPDAKDWLP	9	Unmodified	_FPDAKDWLP_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.77419952155	2	544.7742	1087.53385	1.1084	0.00060384	-3.6466	-0.0019866	-2.5382	-0.0013827	544.7719604843131	27.373	0.19305	27.363	27.242	27.436	-0.010126	1278	64	0.85049206	0.038702607	0.8489726	344.97147	0	15.698334						181	9	3	NaN	NaN	NaN	0.31471	1	11970	11970		17.97	2.507	1	18745			5742	4480	3345	3407	4533	4533					-0.00641945931056398
FPDAKDWLP	9	Unmodified						0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.7742	1087.53385	1.9692	0.0010728	-7.2213	-0.003934	-5.2522	-0.0028612	544.7695825519436	27.228	0.072405	27.218	27.17	27.242	-0.010124	1218	43	0.8873258	0.025753021	0.8858064	359.91174		10.44577	-0.017506	-0.0034373	0.018579	NaN	19.336	44	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2877.2			5743	4480	3345	3407							-0.00641945931056398
FPDAREQEI	9	Unmodified	_FPDAREQEI_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7696454599001	2	552.769645	1103.52474	2.0318	0.0011231	-1.9089	-0.0010552	0.12294	6.7957E-05	552.768397191179	18.34	0.28792	18.34	18.101	18.388	0	1251	76	0.8670771	0.046049654	0.8670771	351.6348	0	18.674988						344	13	3	NaN	NaN	NaN	0.11656	1	12985	12985		33.425	4.5297	1	80097			5744	3586	3346	3408	4534	4534					-0.022883392873836783
FPDAREQEI	9	Unmodified	_FPDAREQEI_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7696454599001	2	552.769645	1103.52474	1.9842	0.0010968	-6.1166	-0.0033811	-4.1324	-0.0022843	552.7665345776105	18.218	0.095987	18.204	18.132	18.228	-0.01395	1251	73	0.8670771	0.04420048	0.8655577	351.63483	0	17.92508						147	5	2	NaN	NaN	NaN	0.045904	1	12635	12635		48.65	18.04	1	21211			5745	3586	3346	3408	4535	4535					-0.022883392873836783
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7951319289001	2	561.795132	1121.57571	1.6921	0.00095059	-1.9697	-0.0011066	-0.27768	-0.000156	561.7941557803734	32.514	0.50677	32.514	32.297	32.804	0	1230	73	0.8799654	0.044176638	0.8799654	356.7907	0	17.911865						644	22	3	NaN	NaN	NaN	0.10581	1	13744	13744		45.165	11.74	1	169690			5746	388	3347	3409	4536	4536					0.019786097574751693
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5829873912	1	1122.58299	1121.57571	1.9609	0.0022013	-1.1955	-0.001342	0.76547	0.0008593	1123.5847630635874	32.539	0.21717	32.539	32.418	32.635	0	63	94	1.5811787	0.054762244	1.5811787	320.5558	0	11.102081						458	10	3	NaN	NaN	NaN	0.026555	1	13749	13749		60.982	22.851	1	77357			5747	388	3347	3409	4537	4537					0.019786097574751693
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5829873912	1	1122.58299	1121.57571	1.7261	0.0019377	-0.25167	-0.00028252	1.4744	0.0016551	1122.5828251795415	32.37	0.072411	32.37	32.321	32.394	0	60	70	1.582944	0.0406214	1.582944	320.91367	0	8.235291						141	4	3	NaN	NaN	NaN	0.0065408	1	13752	13752		75.698	35.545	1	14008			5748	388	3347	3409	4538	4538					0.019786097574751693
FPDASFQVVL	10	Unmodified	_FPDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7951319289001	2	561.795132	1121.57571	1.3256	0.00074472	-2.1761	-0.0012225	-0.8505	-0.0004778	561.7938394204571	32.537	0.69986	32.534	32.221	32.92	-0.0031052	1227	109	0.88180584	0.06622201	0.8802864	357.5369	0	26.850372						887	30	2	NaN	NaN	NaN	0.10581	1	13343	13343		45.165	21.83	1	253040			5749	388	3347	3409	4539	4539					0.019786097574751693
FPDASFQVVL	10	Unmodified						0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1122.58299	1121.57571	1.0628	0.0011931	-0.39503	-0.00044345	0.66776	0.00074962	1122.581751027311	32.682	0.21715	32.679	32.655	32.872	-0.0031052	60	73	1.582944	0.04238093	1.5814246	320.91367		8.59198	0.070296	0.00066659	0.00012298	NaN	60.982	308	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40324			5750	388	3347	3409							0.019786097574751693
FPDATTTAKQL	11	Unmodified	_FPDATTTAKQL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.81405296355	2	596.814053	1191.61355	1.3386	0.0007989	-3.032	-0.0018096	-1.6934	-0.0010107	597.3124551727146	19.396	0.11999	19.396	19.348	19.468	0	1200	64	0.89836043	0.038589835	0.89836043	363.98907	0	15.635468						138	6	4	NaN	NaN	NaN	0.26275	1	16203	16203		26.96	11.138	1	16003			5751	1865	3348	3410	4540	4540					0.025410759522856097
FPDATTTAKQL	11	Unmodified	_FPDATTTAKQL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.81405296355	2	596.814053	1191.61355	1.1208	0.0006689	-3.1052	-0.0018532	-1.9844	-0.0011843	596.8117415662621	19.394	0.12017	19.38	19.356	19.476	-0.014141	1203	61	0.8965218	0.036758184	0.89500237	363.24414	0	14.893341						153	6	3	NaN	NaN	NaN	0.027833	1	15586	15586		57.782	27.172	1	17336			5752	1865	3348	3410	4541	4541					0.025410759522856097
FPDAVKQIL	9	Unmodified	_FPDAVKQIL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.8002173068	2	515.800217	1029.58588	1.9526	0.0010072	-2.272	-0.0011719	-0.31935	-0.00016472	515.7990836842745	24.719	0.21712	24.719	24.623	24.84	0	1293	91	0.84127116	0.055298448	0.84127116	341.4715	0	22.445618						455	10	4	NaN	NaN	NaN	0.077759	1	9772	9772		39.039	9.4408	1	127300			5753	3387	3349	3411	4542	4542					0.07227217482704873
FPDAVKQIL	9	Unmodified	_FPDAVKQIL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.8002173068	2	515.800217	1029.58588	1.272	0.00065611	-1.3568	-0.00069984	-0.084788	-4.3734E-05	515.7995772036683	24.743	0.21706	24.731	24.61	24.827	-0.012394	1293	91	0.84127116	0.055298448	0.8397517	341.47147	0	22.445618						365	10	4	NaN	NaN	NaN	0.077759	1	9575	9575		39.039	9.4408	1	102110			5754	3387	3349	3411	4543	4543					0.07227217482704873
FPDAVLIML	9	Unmodified	_FPDAVLIML_					0	0	0		ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5641662045001	1	1018.56417	1017.55689	1.7332	0.0017653	-0.54236	-0.00055243	1.1908	0.0012129	1018.5639021807526	37.744	0.26452	37.747	37.627	37.891	0.0028229	147	70	1.5316714	0.040733576	1.530152	310.90485	0	8.2682495						406	12	3	NaN	NaN	NaN	0.03623	1	9105	9105		52.758	11.298	1	54317			5755	1285	3350	3412	4544	4544					0.048813568620630576
FPDAVLIML	9	Unmodified						0	0	0		ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1018.56417	1017.55689	1.7763	0.0018093	-0.17462	-0.00017786	1.6017	0.0016314	1018.564003852137	37.747	0.33672	37.747	37.626	37.963	0	150	64	1.5299006	0.03719151	1.5299006	310.5454		7.5492554	-0.00011357	0.00017854	-0.0001257	NaN	52.758	438	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56386			5756	1285	3350	3412							0.048813568620630576
FPDAVLIML	9	Oxidation (M)	_FPDAVLIM(Oxidation (M))L_		FPDAVLIM(1)L		FPDAVLIM(42)L	0	0	1		ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5590808266	1	1034.55908	1033.5518	0.93722	0.00096961	-2.1376	-0.0022115	-1.2004	-0.0012419	1034.5584650119376	33.913	0.33792	33.911	33.767	34.105	-0.0012474	150	73	1.5299006	0.042511344	1.5283811	310.48114	0	8.627319						596	15	3	NaN	NaN	NaN	0.062072	1	9731	9731		41.785	15.053	1	85997			5757	1285	3350	3413	4545	4545		140			0.03637052999442858
FPDDVPTSL	9	Unmodified	_FPDDVPTSL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4778536177001	1	990.477854	989.470577	2.4106	0.0023876	-0.80277	-0.00079512	1.6078	0.0015925	990.4770549945632	26.432	0.26546	26.432	26.215	26.481	0	252	79	1.4695803	0.04622531	1.4695803	298.41452	0	9.386536						321	12	3	NaN	NaN	NaN	0.011942	1	8182	8182		87.021	42.718	1	36308			5758	2248	3351	3414	4546	4546					-0.024579314389370666
FPDDVPTSL	9	Unmodified	_FPDDVPTSL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4778536177001	1	990.477854	989.470577	1.7417	0.0017251	0.77127	0.00076392	2.5129	0.002489	990.479023754318	26.408	0.26541	26.397	26.276	26.542	-0.011137	249	67	1.4713576	0.039101243	1.4698381	298.77542	0	7.9399414						283	12	2	NaN	NaN	NaN	0.10956	1	8018	8018		34.439	13.883	1	36658			5759	2248	3351	3414	4547	4547					-0.024579314389370666
FPDEFHLQTL	10	Unmodified	_FPDEFHLQTL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8087706204001	2	623.808771	1245.60299	1.5771	0.00098379	-2.3007	-0.0014352	-0.72363	-0.00045141	623.8074672691923	27.253	0.31371	27.253	27.133	27.446	0	1146	82	0.93142134	0.049562037	0.93142134	377.1971	0	20.071106						581	14	3	NaN	NaN	NaN	0.030693	1	17651	17651		59.273	33.472	1	168040			5760	742	3352	3415	4548	4548					-0.009989067021479059
FPDEFHLQTL	10	Unmodified	_FPDEFHLQTL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8087706204001	2	623.808771	1245.60299	0.97219	0.00060646	-1.5669	-0.00097743	-0.59469	-0.00037097	623.8077922707188	27.277	0.31373	27.267	27.146	27.46	-0.010126	1146	85	0.93142134	0.051389337	0.9299019	377.1971	0	20.811096						749	14	5	NaN	NaN	NaN	0.10967	1	16908	16908		44.633	22.862	1	171310			5761	742	3352	3415	4549	4549					-0.009989067021479059
FPDEFVFDVW	10	Unmodified	_FPDEFVFDVW_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.7978715831	2	650.797872	1299.58119	0.59243	0.00038556	-5.9224	-0.0038543	-5.3299	-0.0034687	651.2951084158307	38.9	0.21624	38.9	38.804	39.02	0	1149	55	0.92958635	0.03302884	0.92958635	376.28253	0	13.369598						167	10	2	NaN	NaN	NaN	0.47601	1	18764	18764		20.449	10.205	1	15734			5762	2362	3353	3416	4550	4550					-0.056617114507162114
FPDEFVFDVW	10	Unmodified	_FPDEFVFDVW_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000137960|ENST00000370759|GIPC2	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.7978715831	2	650.797872	1299.58119	1.2509	0.00081407	-3.872	-0.0025199	-2.6211	-0.0017058	650.7957540306849	38.922	0.12011	38.927	38.807	38.927	0.0046806	1146	58	0.93142134	0.034858167	0.9299019	377.02533	0	14.110046						96	6	2	NaN	NaN	NaN	0.15427	1	17937	17937		39.459	21.489	1	8879.9			5763	2362	3353	3416	4551	4551					-0.056617114507162114
FPDEGILAV	9	Unmodified	_FPDEGILAV_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5036744377002	1	960.503674	959.496398	1.174	0.0011276	-0.54688	-0.00052528	0.62709	0.00060232	960.502645175701	30.004	0.16889	29.997	29.828	29.997	-0.0064106	252	79	1.4695803	0.046230197	1.4680609	298.54257	0	9.391571						204	8	2	NaN	NaN	NaN	0.10956	1	7176	7176		34.439	5.7723	1	25535			5764	1765	3354	3417	4552	4552					0.015029628033403242
FPDELEEML	9	Unmodified	_FPDELEEML_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5023538086998	1	1122.50235	1121.49508	1.6515	0.0018538	1.45	0.0016276	3.1015	0.0034814	1122.5031296871625	31.983	0.1931	31.983	31.911	32.104	0	90	79	1.5652816	0.045936942	1.5652816	317.3332	0	9.312927						330	9	3	NaN	NaN	NaN	0.032764	1	13731	13731		55.494	25.458	1	29052			5765	575	3355	3418	4553	4553					-0.06081039347736805
FPDFFTRVA	9	Unmodified	_FPDFFTRVA_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2821917291501	2	550.282192	1098.54983	1.2049	0.00066302	0.40115	0.00022075	1.606	0.00088377	550.7836118017117	27.735	0.072386	27.726	27.677	27.75	-0.009552	1224	55	0.883646	0.033128858	0.88212657	358.37418	0	13.435852						93	4	3	NaN	NaN	NaN	0.33202	1	12454	12454		16.858	2.8167	1	8288.4			5766	5620	3356	3419	4554	4554					0.004497603058553068
FPDFFTRVA	9	Unmodified						0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.282192	1098.54983	1.2495	0.0006876	-1.4232	-0.00078315	-0.17364	-9.5551E-05	550.2805860320517	27.664	0.096533	27.664	27.639	27.736	0	1227	79	0.88180584	0.047858	0.88180584	357.62787		19.409454	-0.031012	-0.0010165	-0.00016038	NaN	16.858	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9443.8			5767	5620	3356	3419							0.004497603058553068
FPDFFTRVAL	10	Unmodified	_FPDFFTRVAL_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.8242237193501	2	606.824224	1211.63389	0.4605	0.00027945	-5.815	-0.0035287	-5.3545	-0.0032492	606.8200776861653	31.356	0.16894	31.356	31.259	31.428	0	1194	67	0.902037	0.04042095	0.902037	365.4096	0	16.374268						164	6	3	NaN	NaN	NaN	0.26776	1	16765	16765		29.706	3.9053	1	34919			5768	5620	3357	3420	4555	4555					0.0365429140276774
FPDFFTRVAL	10	Unmodified	_FPDFFTRVAL_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.8242237193501	2	606.824224	1211.63389	0.43198	0.00026214	-8.682	-0.0052685	-8.25	-0.0050063	606.8192775121323	31.355	0.19304	31.35	31.253	31.446	-0.0050716	1188	73	0.90571284	0.044090807	0.9041934	366.89868	0	17.860931						199	9	2	NaN	NaN	NaN	0.26776	1	16096	16096		29.706	11.737	1	36277			5769	5620	3357	3420	4556	4556					0.0365429140276774
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8107819931	2	611.810782	1221.60701	0.59994	0.00036705	-1.9916	-0.0012185	-1.3917	-0.00085146	611.809593543042	35.289	0.55494	35.289	35.048	35.603	0	1200	115	0.89836043	0.06978786	0.89836043	363.88678	0	28.268036						1452	24	4	NaN	NaN	NaN	0.022259	1	17018	17018		60.982	43.012	1	337720			5770	5840	3358	3421	4557	4557					0.005071827915571703
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8107819931	2	611.810782	1221.60701	0.88233	0.00053982	-1.1487	-0.00070277	-0.26634	-0.00016295	611.8103121737412	36.036	0.048271	36.036	36.012	36.061	0	1197	37	0.9001988	0.022059679	0.9001988	364.63144	0	8.935425						43	3	2	NaN	NaN	NaN	0.37016	1	17019	17019		23.118	14.873	1	4439.9			5771	5840	3358	3421	4558	4558					0.005071827915571703
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1222.6142875195999	1	1222.61429	1221.60701	1.6043	0.0019615	-0.11284	-0.00013796	1.4915	0.0018235	1222.614723601369	35.192	0.14481	35.192	35.096	35.241	0	60	67	1.582944	0.038849115	1.582944	320.59387	0	7.8681335						209	7	2	NaN	NaN	NaN	0.0002157	1	17020	17020		81.699	63.73	1	20490			5772	5840	3358	3421	4559	4559					0.005071827915571703
FPDFPTPGVVF	11	Unmodified	_FPDFPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.8107819931	2	611.810782	1221.60701	0.89687	0.00054871	-1.8683	-0.0011431	-0.97144	-0.00059434	611.8097208896166	35.288	0.50664	35.287	35.046	35.553	-4.5776E-05	1197	115	0.9001988	0.06978035	0.8986794	364.63144	0	28.264984						1507	22	4	NaN	NaN	NaN	0.059285	1	16330	16330		47.482	30.897	1	334620			5773	5840	3358	3421	4560	4560					0.005071827915571703
FPDFPTPGVVF	11	Unmodified						0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.810782	1221.60701	0.99814	0.00061067	-0.82167	-0.00050271	0.17646	0.00010796	611.8101076167502	36.059	0.072353	36.06	35.988	36.06	0.0011024	1194	37	0.902037	0.022059679	0.9005176	365.376		8.935425	0.011853	0.00017573	0.00015938	NaN	23.118	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6303.2			5774	5840	3358	3421							0.005071827915571703
FPDFQDSVQTL	11	Unmodified	_FPDFQDSVQTL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;ENST00000458074.1_1_X:150394703-150395165:-|nuORF	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.8089675856501	2	648.808968	1295.60338	1.5434	0.0010013	-1.3089	-0.00084924	0.23444	0.00015211	649.3100315614031	29.305	0.36196	29.305	29.112	29.474	0	1152	88	0.92775106	0.05318737	0.92775106	375.55176	0	21.530151						394	16	2	NaN	NaN	NaN	0.16151	1	18697	18697		33.907	13.394	1	57694			5775	3154	3359	3422	4561	4561					-0.032595317729374074
FPDFQDSVQTL	11	Unmodified	_FPDFQDSVQTL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;ENST00000458074.1_1_X:150394703-150395165:-|nuORF	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8089675856501	2	648.808968	1295.60338	1.1403	0.00073982	-1.9246	-0.0012487	-0.78432	-0.00050887	648.8078024963763	29.304	0.21714	29.296	29.224	29.441	-0.0077229	1149	82	0.92958635	0.049524605	0.9280669	376.29468	0	20.047485						346	10	3	NaN	NaN	NaN	0.19064	1	17858	17858		31.198	14.614	1	46796			5776	3154	3359	3422	4562	4562					-0.032595317729374074
FPDFVWTL	8	Unmodified	_FPDFVWTL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1;nc|ENSG00000117226|Q9H0R5-4|GBP3	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5138451935	1	1024.51385	1023.50657	1.1895	0.0012187	0.03475	3.5602E-05	1.2242	0.0012543	1024.5131298320546	37.335	0.12049	37.338	37.217	37.338	0.0028267	177	55	1.5139546	0.031903744	1.5124352	307.28473	0	6.4754333						123	6	2	NaN	NaN	NaN	0.11172	1	9310	9310		61.977	13.974	1	13082			5777	2134;2133	3360	3423	4563	4563					-0.004244294714339958
FPDGQTCCAL	10	Unmodified	_FPDGQTCCAL_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7202524262999	2	527.720252	1053.42595	1.5256	0.00080507	0.52784	0.00027855	2.0534	0.0010836	528.222314735354	23.368	0.072386	23.355	23.331	23.403	-0.013294	1314	46	0.8283535	0.027689636	0.8268341	336.1278	0	11.23584						154	4	4	NaN	NaN	NaN	0.56921	1	10543	10543		16.584	2.1591	1	16677	+		5778	13211	3361	3424	4564	4564					-0.09862401848317859
FPDGSFIQNL	10	Unmodified	_FPDGSFIQNL_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2823886944	2	569.282389	1136.55022	0.91335	0.00051995	-2.5772	-0.0014671	-1.6638	-0.00094718	569.2814680640353	30.8	0.14478	30.794	30.746	30.891	-0.0057545	1227	67	0.88180584	0.040473342	0.8802864	357.4797	0	16.407684						278	7	3	NaN	NaN	NaN	0.507	1	13864	13864		19.164	2.5794	1	32132			5779	4795	3362	3425	4565	4565					-0.012588647649636187
FPDHVDTQHL	10	Unmodified	_FPDHVDTQHL_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.5280051750667	3	403.528005	1207.56219	1.9294	0.00077857	-1.7344	-0.00069988	0.195	7.8688E-05	403.527135970095	18.074	0.19208	18.06	17.988	18.18	-0.013786	1431	40	0.75620437	0.02409923	0.7546849	459.51367	0	14.6441345						116	9	2	NaN	NaN	NaN	0.68732	1	15999	15999		7.2894	2.2725	1	10019			5780	7973	3363	3426	4566	4566					-0.033292480217596676
FPDKDWAHI	9	Unmodified	_FPDKDWAHI_					0	0	0		ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000099875|Q9HBH9-2|MKNK2;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1;ENSG00000099875|ENST00000250896|MKNK2	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.77727352675	2	564.777274	1127.53999	1.6766	0.00094692	0.43149	0.00024369	2.1081	0.0011906	564.7777168266194	21.127	0.26486	21.127	20.983	21.248	0	1245	73	0.87076044	0.044186175	0.87076044	353.03577	0	17.91455						278	12	3	NaN	NaN	NaN	0.27507	1	13997	13997		20.513	6.4717	1	29138			5781	891	3364	3427	4567	4567					-0.01867427699539803
FPDKDWAHI	9	Unmodified						0	0	0		ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000099875|Q9HBH9-2|MKNK2;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1;ENSG00000099875|ENST00000250896|MKNK2	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.777274	1127.53999	1.8287	0.0010328	-3.3001	-0.0018638	-1.4714	-0.00083103	564.7746405104311	21.537	0.096466	21.523	21.475	21.571	-0.014004	1236	43	0.876284	0.02576971	0.8747646	355.27524		10.4479065	0.19773	-0.0019805	0.0020021	NaN	20.513	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5235.3			5782	891	3364	3427							-0.01867427699539803
FPDKVAIQL	9	Unmodified	_FPDKVAIQL_					0	0	0		PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.8002173068	2	515.800217	1029.58588	2.2129	0.0011414	-2.1403	-0.001104	0.072628	3.7461E-05	516.3003388451494	24.985	0.4585	24.985	24.816	25.274	0	1299	100	0.8375814	0.06084478	0.8375814	339.97382	0	24.696838						629	20	3	NaN	NaN	NaN	0.040769	1	9774	9774		50.831	5.6659	1	211310			5783	1293	3365	3428	4568	4568					0.07227217482704873
FPDKVAIQL	9	Unmodified						0	0	0		PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB;PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.800217	1029.58588	1.7537	0.00090458	-1.8055	-0.00093126	-0.051735	-2.6685E-05	515.7990496208987	25.033	0.43426	25.021	24.876	25.31	-0.012011	1299	91	0.8375814	0.05531043	0.83606195	339.97382		22.45047	0.018012	0.00012936	-0.00075972	NaN	50.831	679	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219940			5784	1293	3365	3428							0.07227217482704873
FPDLAVILL	9	Unmodified	_FPDLAVILL_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.6077455787002	1	1000.60775	999.600469	1.5366	0.0015376	0.37544	0.00037567	1.9121	0.0019132	1000.6080641484652	40.945	0.43258	40.945	40.849	41.281	0	132	112	1.5405227	0.065521	1.5405227	312.7766	0	13.302887						1058	19	4	NaN	NaN	NaN	0.023074	1	8589	8589		68.108	9.5092	1	238520			5785	362	3366	3429	4569	4569					0.10065289630870211
FPDLAVILL	9	Unmodified	_FPDLAVILL_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.6077455787002	1	1000.60775	999.600469	1.7202	0.0017212	-2.5963	-0.0025979	-0.87615	-0.00087668	1000.6057241145122	41.713	0.072254	41.721	41.721	41.793	0.0082588	126	31	1.544062	0.017696142	1.5425426	313.4952	0	3.5928955						52	4	2	NaN	NaN	NaN	0.062072	1	8411	8411		41.785	5.198	1	3224			5786	362	3366	3429	4570	4570					0.10065289630870211
FPDLAVILL	9	Unmodified						0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.60775	999.600469	1.5751	0.0015761	-1.2121	-0.0012128	0.36309	0.00036331	1000.607620947382	41.353	0.048111	41.353	41.353	41.401	0	135	28	1.5387528	0.015929103	1.5387528	312.4173		3.2341003	-0.18381	0.00065266	-0.0018948	NaN	41.785	32	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2006.9			5787	362	3366	3429							0.10065289630870211
FPDLAVILL	9	Unmodified						0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.60775	999.600469	1.5282	0.0015292	-0.0095081	-9.5139E-06	1.5187	0.0015196	1000.6072909899914	40.919	0.36067	40.926	40.83	41.191	0.0074959	129	115	1.5422925	0.06728828	1.540773	313.13593		13.661713	-0.0091942	-0.00018397	0.00012514	NaN	68.108	1069	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240940			5788	362	3366	3429							0.10065289630870211
FPDLFSEQL	9	Unmodified	_FPDLFSEQL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5357028475999	1	1095.5357	1094.52843	1.6548	0.0018129	1.4838	0.0016256	3.1386	0.0034384	1095.5338597794482	32.828	0.19306	32.828	32.756	32.949	0	78	97	1.5723488	0.056555748	1.5723488	318.86145	0	11.469116						447	9	4	NaN	NaN	NaN	0.006197	1	12603	12603		100.15	44.652	1	76634			5789	5836	3367	3430	4571	4571					-0.015056695135399423
FPDLFSEQL	9	Unmodified	_FPDLFSEQL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2714896571	2	548.27149	1094.52843	1.1339	0.00062167	-1.5818	-0.00086724	-0.44789	-0.00024557	548.2706530184962	32.827	0.193	32.824	32.776	32.969	-0.0031052	1245	58	0.87076044	0.034986377	0.869241	353.16437	0	14.189819						316	9	4	NaN	NaN	NaN	0.14787	1	12271	12271		28.896	1.1068	1	75191			5790	5836	3367	3430	4572	4572					-0.015056695135399423
FPDLFSEQL	9	Unmodified	_FPDLFSEQL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5357028475999	1	1095.5357	1094.52843	1.4115	0.0015464	1.2737	0.0013954	2.6853	0.0029418	1095.5346918866317	32.827	0.24128	32.824	32.727	32.969	-0.0031052	75	91	1.5741152	0.05301547	1.5725957	319.21967	0	10.75116						461	11	4	NaN	NaN	NaN	8.9076E-05	1	12275	12275		123.58	62.593	1	68240			5791	5836	3367	3430	4573	4573					-0.015056695135399423
FPDLTVEL	8	Unmodified	_FPDLTVEL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4927754004001	1	933.492775	932.485499	1.326	0.0012378	1.4749	0.0013768	2.801	0.0026147	933.4939090079696	32.08	0.28958	32.08	31.935	32.225	0	303	73	1.4393384	0.042742133	1.4393384	292.51883	0	8.686523						300	13	2	NaN	NaN	NaN	0.45125	1	6663	6663		33.698	6.9667	1	27453			5792	2061	3368	3431	4574	4574					0.01655560429048819
FPDLTVEL	8	Unmodified	_FPDLTVEL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4927754004001	1	933.492775	932.485499	0.83623	0.00078062	0.94704	0.00088406	1.7833	0.0016647	933.4925161092148	32.055	0.31371	32.051	31.954	32.268	-0.0037613	300	61	1.4411188	0.035618424	1.4395994	292.88068	0	7.2387695						304	14	2	NaN	NaN	NaN	0.040055	1	6525	6525		82.858	26.911	1	28019			5793	2061	3368	3431	4575	4575					0.01655560429048819
FPDLVQPLL	9	Unmodified	_FPDLVQPLL_					0	0	0		ENSG00000111321|ENST00000228918|LTBR;nc|ENSG00000111321|P36941-2|LTBR	ENSG00000111321|ENST00000228918|LTBR	ENSG00000111321|ENST00000228918|LTBR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5979091739	1	1041.59791	1040.59063	1.438	0.0014978	-5.7141	-0.0059518	-4.2761	-0.004454	1041.5911794497977	34.3	0.1447	34.3	34.228	34.372	0	120	154	1.5476005	0.09020746	1.5476005	314.04523	0	18.305267						341	7	2	NaN	NaN	NaN	0.084037	1	10247	10247		38.131	9.2352	1	52157			5794	1800	3369	3432	4576	4576					0.07196101625481788
FPDLVQPLL	9	Unmodified	_FPDLVQPLL_					0	0	0		ENSG00000111321|ENST00000228918|LTBR;nc|ENSG00000111321|P36941-2|LTBR	ENSG00000111321|ENST00000228918|LTBR	ENSG00000111321|ENST00000228918|LTBR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5979091739	1	1041.59791	1040.59063	1.1695	0.0012182	-6.0541	-0.006306	-4.8846	-0.0050878	1041.589083957082	34.275	0.12051	34.274	34.225	34.346	-0.0012474	123	136	1.5458313	0.07958639	1.5443119	313.68622	0	16.149994						406	6	3	NaN	NaN	NaN	0.054111	1	10033	10033		45.165	9.8684	1	52691			5795	1800	3369	3432	4577	4577					0.07196101625481788
FPDLYEPIL	9	Unmodified	_FPDLYEPIL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5768393808	1	1106.57684	1105.56956	1.0473	0.0011589	2.3187	0.0025658	3.366	0.0037248	1106.579492789191	34.01	0.14476	34.01	33.866	34.01	0	63	64	1.5811787	0.03708136	1.5811787	320.6122	0	7.518921						119	7	2	NaN	NaN	NaN	0.12328	1	13086	13086		32.453	2.8544	1	15160			5796	4713	3370	3433	4578	4578					0.021000915259492103
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3167628279999	2	617.316763	1232.61897	1.9416	0.0011986	-0.97825	-0.00060389	0.96335	0.00059469	617.3166235639954	23.513	0.2893	23.513	23.417	23.706	0	1173	127	0.91489893	0.07715064	0.91489893	370.5488	0	31.247284						1121	13	4	NaN	NaN	NaN	2.1832E-22	1	17344	17344		145.18	100.54	1	634970			5797	495	3371	3434	4579	4579					0.011967995347276883
FPDPAGKLNQF	11	Unmodified	_FPDPAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3167628279999	2	617.316763	1232.61897	2.0393	0.0012589	-1.3172	-0.00081314	0.72209	0.00044576	617.3163578770844	23.537	0.43398	23.524	23.428	23.861	-0.01305	1173	115	0.91489893	0.06978786	0.9133795	370.5488	0	28.265228						1287	19	4	NaN	NaN	NaN	1.7179999999999999E-22	1	16618	16618		147.08	96.253	1	665820			5798	495	3371	3434	4580	4580					0.011967995347276883
FPDPNVKYVF	10	Unmodified	_FPDPNVKYVF_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.31623151175	2	613.316232	1224.61791	2.0655	0.0012668	-1.7929	-0.0010996	0.27262	0.0001672	613.3151380808362	25.998	0.65157	25.998	25.66	26.312	0	1173	118	0.91489893	0.071612775	0.91489893	370.57562	0	29.00644						1632	28	4	NaN	NaN	NaN	0.012803	1	17091	17091		80.442	39.485	1	718000			5799	4000	3372	3435	4581	4581					0.014585851658239335
FPDPNVKYVF	10	Unmodified						0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	613.316232	1224.61791	2.1844	0.0013398	-1.4911	-0.00091452	0.69333	0.00042523	613.8166980085455	26.046	0.48266	26.035	25.818	26.3	-0.011135	1173	133	0.91489893	0.08080709	0.9133795	370.57562		32.73053	0.01846	0.00021142	-0.00075972	NaN	80.442	1004	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630400			5800	4000	3372	3435							0.014585851658239335
FPDPQLRLEYE	11	Unmodified	_FPDPQLRLEYE_					0	0	0		ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.8511667513502	2	703.851167	1405.68778	1.6524	0.001163	-4.1165	-0.0028974	-2.4642	-0.0017344	703.8477634108779	23.465	0.12067	23.451	23.355	23.476	-0.013294	1047	34	0.99186665	0.020111501	0.9903472	401.17374	0	8.134369						96	6	3	NaN	NaN	NaN	0.69656	1	19159	19159		7.6826	0.69823	1	8859.4			5801	3908	3373	3436	4582	4582					0.0011641904384305235
FPDPQLRLEYE	11	Unmodified						0	0	0		ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	ENSG00000156206|ENST00000286732|CFAP161	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	703.851167	1405.68778	1.5163	0.0010673	-0.80372	-0.0005657	0.71262	0.00050158	703.8504656064996	23.32	0.048262	23.32	23.32	23.369	0	1047	37	0.99186665	0.021941006	0.99186665	401.17374		8.874359	-0.06551	0.002394	0.00075972	NaN	7.6826	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5401.4			5802	3908	3373	3436							0.0011641904384305235
FPDPRGLYHF	10	Unmodified	_FPDPRGLYHF_					0	0	0		ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.87685726243336	3	416.876857	1247.60874	1.2971	0.00054071	-2.4057	-0.0010029	-1.1086	-0.00046217	416.8759062747868	24.598	0.217	24.598	24.454	24.671	0	1467	70	0.7339432	0.042669594	0.7339432	445.82498	0	25.919128						178	10	3	NaN	NaN	NaN	0.68669	1	17719	17719		4.6175	1.8284	1	15055			5803	5922	3374	3437	4583	4583					-0.005157633998123856
FPDPRGLYHF	10	Unmodified	_FPDPRGLYHF_					0	0	0		ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.87685726243336	3	416.876857	1247.60874	1.0164	0.00042373	-1.0882	-0.00045366	-0.071797	-2.993E-05	416.87652033115523	24.623	0.16873	24.61	24.514	24.682	-0.012394	1467	37	0.7339432	0.022273242	0.7324238	445.82498	0	13.529633						134	8	2	NaN	NaN	NaN	0.64158	1	16975	16975		13.101	6.4838	1	14835			5804	5922	3374	3437	4584	4584					-0.005157633998123856
FPDPVDSGTQM	11	Unmodified	_FPDPVDSGTQM_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.26079597255	2	597.260796	1192.50704	1.0788	0.00064432	-0.70813	-0.00042294	0.37066	0.00022138	597.2603187237312	24.164	0.0966	24.164	24.116	24.213	0	1278	40	0.85049206	0.02396655	0.85049206	344.59128	0	9.710449						165	5	4	NaN	NaN	NaN	0.046084	1	16211	16211		50.831	33.032	1	23124			5805	5067	3375	3438	4585	4585					-0.08151422604555592
FPDPVDSGTQM	11	Unmodified	_FPDPVDSGTQM_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.26079597255	2	597.260796	1192.50704	1.0094	0.00060286	0.49186	0.00029377	1.5012	0.00089663	597.2612351572161	24.164	0.12062	24.151	24.103	24.224	-0.012749	1278	37	0.85049206	0.022124112	0.8489726	344.59128	0	8.963959						173	6	4	NaN	NaN	NaN	0.10634	1	15597	15597		39.039	17.204	1	21974			5806	5067	3375	3438	4586	4586					-0.08151422604555592
FPDPVDSGTQM	11	Oxidation (M)	_FPDPVDSGTQM(Oxidation (M))_		FPDPVDSGTQM(1)		FPDPVDSGTQM(100)	0	0	1		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.2582532836	2	605.258253	1208.50195	1.2748	0.00077156	-0.31464	-0.00019044	0.96011	0.00058112	605.2583665155141	21.392	0.24072	21.392	21.248	21.488	0	1266	55	0.85786515	0.033168256	0.85786515	347.526	0	13.4366455						294	11	4	NaN	NaN	NaN	2.3748E-09	1	16682	16682		103.78	64.745	1	37821			5807	5067	3375	3439	4587	4587		532			-0.0939572646718716
FPDPVDSGTQM	11	Oxidation (M)	_FPDPVDSGTQM(Oxidation (M))_		FPDPVDSGTQM(1)		FPDPVDSGTQM(54)	0	0	1		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2582532836	2	605.258253	1208.50195	0.98616	0.00059688	-0.64146	-0.00038825	0.3447	0.00020863	605.2582005439401	21.392	0.19243	21.378	21.258	21.45	-0.014006	1266	55	0.85786515	0.03316474	0.8563457	347.526	0	13.435211						303	9	4	NaN	NaN	NaN	0.03503	1	16010	16010		53.652	23.041	1	40184			5808	5067	3375	3439	4588	4588		532			-0.0939572646718716
FPDQFFTVL	9	Unmodified	_FPDQFFTVL_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2844000671	2	557.2844	1112.55425	0.56649	0.0003157	2.8636	0.0015958	3.4301	0.0019115	557.2856152081814	35.41	0.19297	35.41	35.289	35.482	0	1245	67	0.87076044	0.040495276	0.87076044	353.0932	0	16.420807						165	9	2	NaN	NaN	NaN	0.35794	1	13379	13379		15.463	0.28729	1	18949			5809	5450	3376	3440	4589	4589					0.002472247287414575
FPDQFFTVL	9	Unmodified	_FPDQFFTVL_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF;ENSG00000186020|ENST00000591340|ZNF529	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2844000671	2	557.2844	1112.55425	0.73461	0.00040938	0.84145	0.00046893	1.5761	0.00087831	557.2853497249547	35.384	0.14459	35.385	35.336	35.481	0.00053024	1245	67	0.87076044	0.040495276	0.869241	353.0932	0	16.420807						159	7	2	NaN	NaN	NaN	0.10363	1	13000	13000		35.296	11.962	1	19124			5810	5450	3376	3440	4590	4590					0.002472247287414575
FPDQLYDAV	9	Unmodified	_FPDQLYDAV_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5044027191998	1	1067.5044	1066.49713	1.8736	0.0020001	0.85473	0.00091243	2.7284	0.0029125	1067.5048197223475	27.181	0.33788	27.181	27.06	27.398	0	129	109	1.5422925	0.063753486	1.5422925	312.86862	0	12.932983						741	15	3	NaN	NaN	NaN	0.030545	1	11396	11396		58.398	26.722	1	156390			5811	4991	3377	3441	4591	4591					-0.03346242547627298
FPDQLYDAV	9	Unmodified	_FPDQLYDAV_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5044027191998	1	1067.5044	1066.49713	1.1948	0.0012755	1.2798	0.0013662	2.4747	0.0026417	1067.5048305771315	27.18	0.36203	27.17	27.049	27.411	-0.010124	126	115	1.544062	0.06728828	1.5425426	313.22757	0	13.650055						881	16	4	NaN	NaN	NaN	0.015029	1	11131	11131		78.289	25.665	1	157390			5812	4991	3377	3441	4592	4592					-0.03346242547627298
FPDQLYDAVF	10	Unmodified	_FPDQLYDAVF_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.7900465509999	2	607.790047	1213.56554	1.1233	0.00068273	-1.6102	-0.00097868	-0.48694	-0.00029595	607.7889785889663	32.442	0.36195	32.442	32.225	32.587	0	1179	88	0.9112251	0.0532735	0.9112251	369.125	0	21.580383						575	16	3	NaN	NaN	NaN	0.17424	1	16814	16814		45.827	24.055	1	101820			5813	4991	3378	3442	4593	4593					-0.03269997967777272
FPDQVAIQL	9	Unmodified	_FPDQVAIQL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5567726407	1	1030.55677	1029.5495	2.129	0.0021941	-1.5645	-0.0016123	0.56455	0.0005818	1030.556243395088	29.136	0.57925	29.136	28.943	29.522	0	156	208	1.5263584	0.1224345	1.5263584	309.77814	0	24.848389						1887	25	3	NaN	NaN	NaN	8.6802E-12	1	9761	9761		145.7	62.745	1	780470			5814	1254	3379	3443	4594	4594					0.035903405860153725
FPDQVAIQL	9	Unmodified	_FPDQVAIQL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7820245536501	2	515.782025	1029.5495	1.8935	0.00097663	-2.2888	-0.0011805	-0.39533	-0.0002039	515.780849609631	29.159	0.5309	29.151	28.958	29.489	-0.0077209	1266	97	0.85786515	0.059010506	0.8563457	348.20715	0	23.952362						1700	23	4	NaN	NaN	NaN	0.042816	1	9564	9564		49.961	10.503	1	1206800			5815	1254	3379	3443	4595	4595					0.035903405860153725
FPDQVAIQL	9	Unmodified	_FPDQVAIQL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5567726407	1	1030.55677	1029.5495	1.8054	0.0018606	-1.2016	-0.0012383	0.60378	0.00062223	1030.5562194171248	29.135	0.53089	29.127	28.934	29.465	-0.0077229	156	193	1.5263584	0.113544226	1.5248389	309.77814	0	23.044098						1265	23	2	NaN	NaN	NaN	0.00019594	1	9565	9565		117.07	61.653	1	644000			5816	1254	3379	3443	4596	4596					0.035903405860153725
FPDQVQDLVF	10	Unmodified	_FPDQVQDLVF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.3033211017499	2	604.303321	1206.59209	1.059	0.00063994	-4.3714	-0.0026416	-3.3124	-0.0020017	604.3013486829657	31.959	0.31375	31.959	31.815	32.128	0	1209	121	0.892844	0.07346094	0.892844	361.7026	0	29.75998						470	14	4	NaN	NaN	NaN	0.13684	1	16646	16646		40.957	16.557	1	96802			5817	2092	3380	3444	4597	4597					-0.002943090764574663
FPDQVQDLVF	10	Unmodified	_FPDQVQDLVF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.3033211017499	2	604.303321	1206.59209	0.43957	0.00026563	-2.066	-0.0012485	-1.6265	-0.00098288	604.3026782301959	31.934	0.3137	31.93	31.81	32.123	-0.0037613	1206	73	0.894683	0.04410982	0.89316356	362.4476	0	17.869476						465	14	4	NaN	NaN	NaN	0.13684	1	15981	15981		40.957	20.401	1	104400			5818	2092	3380	3444	4598	4598					-0.002943090764574663
FPDQYSDILRL	11	Unmodified	_FPDQYSDILRL_					0	0	0		ENST00000585906.5_1_18:43437816-43497657:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43447592-43462392:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.8537094403	2	683.853709	1365.69287	1.7094	0.001169	-2.7791	-0.0019005	-1.0697	-0.00073153	683.8518365522906	28.991	0.28963	28.991	28.894	29.184	0	1122	43	0.9460945	0.025666952	0.9460945	382.76974	0	10.384308						332	13	4	NaN	NaN	NaN	0.052274	1	19751	19751		49.26	29.924	1	48663			5819	3769	3381	3445	4599	4599					0.024647229064157727
FPDQYSDILRL	11	Unmodified	_FPDQYSDILRL_					0	0	0		ENST00000585906.5_1_18:43437816-43497657:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43447592-43462392:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.8537094403	2	683.853709	1365.69287	1.3311	0.00091029	-2.9211	-0.0019976	-1.59	-0.0010873	683.8516864730485	29.014	0.26547	29.007	28.886	29.151	-0.0077209	1122	67	0.9460945	0.040316403	0.9445751	382.76974	0	16.311157						363	12	4	NaN	NaN	NaN	0.00971	1	18829	18829		69.574	45.174	1	52315			5820	3769	3381	3445	4600	4600					0.024647229064157727
FPDRIMNTF	9	Unmodified	_FPDRIMNTF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000104833|ENST00000264071|TUBB4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.77895893595	2	570.778959	1139.54336	2.0712	0.0011822	-1.5644	-0.00089292	0.50677	0.00028926	570.7781172321486	24.719	0.41019	24.719	24.574	24.985	0	1233	109	0.87812483	0.06625068	0.87812483	355.97626	0	26.856842						1009	18	4	NaN	NaN	NaN	5.6012E-05	1	14426	14426		125.59	70.098	1	537470			5821	1496;5007	3382	3446	4601	4601					-0.020825009171858255
FPDRIMNTF	9	Unmodified	_FPDRIMNTF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000104833|ENST00000264071|TUBB4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.77895893595	2	570.778959	1139.54336	1.6195	0.00092439	-0.47828	-0.00027299	1.1412	0.00065139	570.7791643823708	24.743	0.28942	24.731	24.61	24.9	-0.012394	1233	94	0.87812483	0.057039917	0.8766054	355.97623	0	23.122955						767	13	3	NaN	NaN	NaN	0.017791	1	13955	13955		74.794	41.369	1	492630			5822	1496;5007	3382	3446	4602	4602					-0.020825009171858255
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(44)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000104833|ENST00000264071|TUBB4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7764162469999	2	578.776416	1155.53828	2.2922	0.0013267	-2.2709	-0.0013143	0.021375	1.2371E-05	578.7754423943495	21.585	0.62636	21.585	21.32	21.946	0	1245	106	0.87076044	0.06440687	0.87076044	352.93243	0	26.105072						1483	27	4	NaN	NaN	NaN	0.057383	1	15001	15001		43.776	13.165	1	517190			5823	1496;5007	3382	3447	4603	4603		172			-0.03326804779817394
FPDRIMNTF	9	Oxidation (M)	_FPDRIM(Oxidation (M))NTF_		FPDRIM(1)NTF		FPDRIM(40)NTF	0	0	1		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000176014|ENST00000317702|TUBB6	ENSG00000104833|ENST00000264071|TUBB4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7764162469999	2	578.776416	1155.53828	2.1107	0.0012216	-1.8112	-0.0010483	0.29953	0.00017336	578.7757734241338	21.609	0.43345	21.595	21.402	21.836	-0.013897	1245	106	0.87076044	0.0643999	0.869241	352.93243	0	26.102264						1392	19	5	NaN	NaN	NaN	0.071077	1	14500	14500		40.006	11.11	1	513280			5824	1496;5007	3382	3447	4604	4604		172			-0.03326804779817394
FPDSMTATQL	10	Unmodified	_FPDSMTATQL_					0	0	0		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;A2ML1-RBM39|2|fusion;A2ML1-RBM39|1|fusion;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7604318318001	2	555.760432	1109.50631	1.5081	0.00083816	-4.5518	-0.0025297	-3.0437	-0.0016915	555.757650533537	25.226	0.12067	25.226	25.178	25.298	0	1239	58	0.87444305	0.034993947	0.87444305	354.59842	0	14.190521						201	6	4	NaN	NaN	NaN	0.019347	1	13245	13245		63.958	16.918	1	27836			5825	2690	3383	3448	4605	4605					-0.044062172535859645
FPDSMTATQL	10	Unmodified	_FPDSMTATQL_					0	0	0		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;A2ML1-RBM39|2|fusion;A2ML1-RBM39|1|fusion;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7604318318001	2	555.760432	1109.50631	1.4008	0.00077851	1.1098	0.00061678	2.5106	0.0013953	555.7619444952796	25.153	0.12064	25.153	25.033	25.153	0	1245	55	0.87076044	0.033150375	0.87076044	353.10507	0	13.442932						152	6	3	NaN	NaN	NaN	0.050502	1	13247	13247		52.78	17.483	1	18700			5826	2690	3383	3448	4606	4606					-0.044062172535859645
FPDSMTATQL	10	Unmodified	_FPDSMTATQL_					0	0	0		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;A2ML1-RBM39|2|fusion;A2ML1-RBM39|1|fusion;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7604318318001	2	555.760432	1109.50631	1.6692	0.00092767	-3.5652	-0.0019814	-1.896	-0.0010537	555.7591106816101	25.226	0.31362	25.214	25.045	25.358	-0.012011	1242	73	0.87260187	0.04419577	0.8710824	353.8518	0	17.921967						364	14	3	NaN	NaN	NaN	0.25724	1	12876	12876		30.61	3.3139	1	54025			5827	2690	3383	3448	4607	4607					-0.044062172535859645
FPDSMTATQL	10	Unmodified						0	0	0		nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;A2ML1-RBM39|2|fusion;A2ML1-RBM39|1|fusion;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF	nc|ENSG00000131051|Q14498-3|RBM39	nc|ENSG00000131051|Q14498-3|RBM39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.760432	1109.50631	3.0674	0.0017047	-5.4462	-0.0030268	-2.3789	-0.0013221	556.2601186668747	25.394	0.024128	25.382	25.382	25.407	-0.012011	1245	37	0.87076044	0.022095501	0.869241	353.1051		8.959991	0.11449	-0.0050868	-0.00075972	NaN	52.78	33	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1976.4			5828	2690	3383	3448							-0.044062172535859645
FPDSYGNNDR	10	Unmodified	_FPDSYGNNDR_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.751984023	2	592.751984	1183.48942	1.6763	0.00099366	-0.3675	-0.00021784	1.3088	0.00077582	593.2519670477805	30.246	0.28959	30.246	30.125	30.415	0	1197	85	0.9001988	0.051489294	0.9001988	364.7626	0	20.863586						668	13	5	NaN	NaN	NaN	0.5917	1	15942	15942		15.463	2.4598	1	110210	+		5829	11003	3384	3449	4608	4608					-0.09499001815197516
FPDSYGNNDR	10	Unmodified						0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.751984	1183.48942	1.6763	0.00099366	-0.3675	-0.00021784	1.3088	0.00077582	593.2519670477805	30.246	0.28959	30.246	30.125	30.415	0	1197	85	0.9001988	0.051489294	0.9001988	364.7626		20.863586	0.0036904	-0.00026964	-0.00015938	NaN	15.463	668	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110210	+		5830	11003	3384	3449							-0.09499001815197516
FPDTGSLNL	9	Unmodified	_FPDTGSLNL_					0	0	0		NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4781879686999	1	963.478188	962.470912	1.3517	0.0013023	2.6363	0.00254	3.988	0.0038424	963.4806729464415	27.036	0.24133	27.036	27.012	27.253	0	261	85	1.4642475	0.049802184	1.4642475	297.4462	0	10.116791						302	11	3	NaN	NaN	NaN	0.042816	1	7398	7398		49.961	16.263	1	39978			5831	5390	3385	3450	4609	4609					-0.011825117191051504
FPDTGSLNL	9	Unmodified	_FPDTGSLNL_					0	0	0		NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	NELFA|p.I459Nfs*39|1|0.09|ENSG00000185049|chr4:1983622-1983623|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4781879686999	1	963.478188	962.470912	1.154	0.0011118	2.642	0.0025455	3.796	0.0036574	963.4808344469798	26.818	0.096535	26.808	26.711	26.808	-0.010645	261	88	1.4642475	0.051589012	1.462728	297.4462	0	10.479767						227	5	2	NaN	NaN	NaN	0.030669	1	7243	7243		58.235	22.939	1	33454			5832	5390	3385	3450	4610	4610					-0.011825117191051504
FPDTKYFP	8	Unmodified	_FPDTKYFP_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4931097514	1	1014.49311	1013.48583	1.5694	0.0015921	-1.428	-0.0014487	0.14136	0.0001434	1014.4917104015414	41.762	0.12028	41.762	41.714	41.835	0	180	40	1.5121819	0.023047686	1.5121819	306.96527	0	4.6785583						68	6	2	NaN	NaN	NaN	0.83582	1	9117	9117		4.4131	0	1	3660.6	+		5833	8993	3386	3451	4611	4611					-0.0203701985110456
FPDTLILGL	9	Unmodified	_FPDTLILGL_					0	0	0		ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5713600724001	1	988.57136	987.564084	1.7816	0.0017612	1.7472	0.0017272	3.5288	0.0034885	988.5729111767017	35.868	0.26519	35.868	35.699	35.964	0	165	94	1.5210435	0.054959893	1.5210435	308.8729	0	11.160522						407	12	2	NaN	NaN	NaN	0.012648	1	8146	8146		84.879	22.902	1	69318			5834	516	3387	3452	4612	4612					0.06980412734139918
FPDTLILGL	9	Unmodified	_FPDTLILGL_					0	0	0		ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5713600724001	1	988.57136	987.564084	1.2687	0.0012542	1.0156	0.001004	2.2843	0.0022582	988.5718779861428	35.842	0.19275	35.843	35.722	35.915	0.00053024	162	70	1.5228153	0.040755033	1.5212959	309.2327	0	8.276001						234	9	2	NaN	NaN	NaN	0.043119	1	7982	7982		49.833	5.5305	1	46948			5835	516	3387	3452	4613	4613					0.06980412734139918
FPDTPLAL	8	Unmodified	_FPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4716460277999	1	873.471646	872.46437	1.047	0.00091455	-1.5287	-0.0013352	-0.48163	-0.00042069	873.4705719540008	30.873	0.12065	30.873	30.777	30.897	0	396	37	1.3840506	0.021439433	1.3840506	281.56406	0	4.361511						71	6	2	NaN	NaN	NaN	0.45125	1	5701	5701		33.698	11.572	1	4158.3			5836	2601	3388	3453	4614	4614					0.02303595120179125
FPDTPLAL	8	Unmodified	_FPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4716460277999	1	873.471646	872.46437	2.4868	0.0021722	0.082986	7.2486E-05	2.5698	0.0022447	873.4720805831765	29.98	0.60337	29.98	29.787	30.391	0	393	205	1.3858368	0.12169719	1.3858368	281.92743	0	24.757446						2261	26	5	NaN	NaN	NaN	0.010408	1	5702	5702		114.16	66.679	1	1306300			5837	2601	3388	3453	4615	4615					0.02303595120179125
FPDTPLAL	8	Unmodified	_FPDTPLAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4716460277999	1	873.471646	872.46437	1.7059	0.0014901	-0.032609	-2.8483E-05	1.6733	0.0014616	873.4718521994445	30.004	0.48261	29.997	29.804	30.287	-0.0064106	393	205	1.3858368	0.12167132	1.3843174	281.92746	0	24.752197						2223	21	5	NaN	NaN	NaN	0.010408	1	5565	5565		114.16	64.128	1	1368600			5838	2601	3388	3453	4616	4616					0.02303595120179125
FPDVGGGYFL	10	Unmodified	_FPDVGGGYFL_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5145734750001	1	1071.51457	1070.5073	1.4421	0.0015452	2.3834	0.0025539	3.8255	0.0040991	1071.5181108766888	32.297	0.16893	32.297	32.225	32.394	0	120	67	1.5476005	0.038923264	1.5476005	313.93036	0	7.895569						199	8	2	NaN	NaN	NaN	0.12649	1	11576	11576		42.318	11.526	1	23317			5839	5758	3389	3454	4617	4617					-0.025136348223668392
FPDVGGGYFL	10	Unmodified						0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1071.51457	1070.5073	0.86109	0.00092267	-0.25932	-0.00027786	0.60178	0.00064481	1071.5155061703538	32.151	0.07238	32.148	32.123	32.196	-0.0037613	120	67	1.5476005	0.03891909	1.5460811	313.93036		7.894745	-0.074807	-0.0010755	-0.00075972	NaN	42.318	107	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8206.3			5840	5758	3389	3454							-0.025136348223668392
FPDWREDVL	9	Unmodified	_FPDWREDVL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.78783821305	2	588.787838	1175.56112	1.086	0.00063941	-0.45485	-0.00026781	0.63112	0.0003716	588.787244790758	27.325	0.28957	27.315	27.074	27.363	-0.010124	1203	112	0.8965218	0.06803584	0.89500237	363.3009	0	27.570404						380	13	2	NaN	NaN	NaN	0.1507	1	15087	15087		28.495	7.982	1	96534			5841	838	3390	3455	4618	4618					-0.019634623906767956
FPDYDAAER	9	Unmodified	_FPDYDAAER_					0	0	0			REV__ENSG00000145708|ENST00000274368|CRHBP	REV__ENSG00000145708|ENST00000274368|CRHBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.8295727188332	3	361.829573	1082.46689	2.2156	0.00080165	-0.7058	-0.00025538	1.5097	0.00054627	362.1634678181487	29.087	0.024158	29.079	29.055	29.079	-0.0077229	1536	37	0.69119483	0.022328973	0.6896754	420.5571	0	13.586029						36	2	2	NaN	NaN	NaN	0.49672	1	11758	11758		5.9198	0	1	2982.8	+		5842	9932	3391	3456	4619	4619					-0.07104601212836315
FPDYLEAIP	9	Unmodified	_FPDYLEAIP_					0	0	0		ENST00000528834.1_1_11:102097758-102100668:+|nuORF;nc|ENSG00000137693|P46937-4|YAP1;KIAA1377-YAP1|2|fusion;KIAA1377-YAP1|3|fusion;KIAA1377-YAP1|1|fusion;nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1	ENST00000528834.1_1_11:102097758-102100668:+|nuORF	ENST00000528834.1_1_11:102097758-102100668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5298891881998	1	1064.52989	1063.52261	1.2798	0.0013624	1.1501	0.0012243	2.4299	0.0025867	1064.5298454988667	31.694	0.50685	31.694	31.404	31.911	0	126	67	1.544062	0.03893566	1.544062	313.23877	0	7.8987427						397	22	3	NaN	NaN	NaN	0.16171	1	11278	11278		27.789	8.6705	1	39711			5843	3102	3392	3457	4620	4620					-0.006607680252045611
FPDYLEAIP	9	Unmodified	_FPDYLEAIP_					0	0	0		ENST00000528834.1_1_11:102097758-102100668:+|nuORF;nc|ENSG00000137693|P46937-4|YAP1;KIAA1377-YAP1|2|fusion;KIAA1377-YAP1|3|fusion;KIAA1377-YAP1|1|fusion;nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1	ENST00000528834.1_1_11:102097758-102100668:+|nuORF	ENST00000528834.1_1_11:102097758-102100668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5298891881998	1	1064.52989	1063.52261	0.55435	0.00059012	2.9134	0.0031014	3.4677	0.0036915	1064.5316510533976	31.693	0.26552	31.688	31.544	31.809	-0.0044174	126	76	1.544062	0.044233322	1.5425426	313.23874	0	8.97348						370	12	3	NaN	NaN	NaN	0.043119	1	11017	11017		49.833	23.101	1	40992			5844	3102	3392	3457	4621	4621					-0.006607680252045611
FPDYLVIQI	9	Unmodified	_FPDYLVIQI_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3078751634	2	554.307875	1106.6012	0.55814	0.00030938	-2.5196	-0.0013966	-1.9615	-0.0010873	554.3064234949936	35.168	0.21721	35.168	35.096	35.313	0	1236	76	0.876284	0.045999944	0.876284	355.3564	0	18.654175						556	10	5	NaN	NaN	NaN	0.23499	1	13138	13138		32.453	4.6639	1	137630			5845	1825	3393	3458	4622	4622					0.0521608427989122
FPDYLVIQI	9	Unmodified	_FPDYLVIQI_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1107.6084738601999	1	1107.60847	1106.6012	0.89396	0.00099015	0.10336	0.00011448	0.99732	0.0011046	1107.608003034109	35.167	0.14482	35.167	35.094	35.239	-4.5776E-05	57	67	1.5847093	0.038845062	1.5831898	321.3244	0	7.8764343						245	7	3	NaN	NaN	NaN	0.090258	1	12771	12771		49.961	14.665	1	25309			5846	1825	3393	3458	4623	4623					0.0521608427989122
FPDYLVIQI	9	Unmodified						0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1107.60847	1106.6012	0.82857	0.00091773	-0.82956	-0.00091883	-0.00098504	-1.091E-06	1107.6070469499782	35.192	0.14481	35.192	35.096	35.241	0	60	70	1.582944	0.040612817	1.582944	320.9665		8.234894	0.01282	-0.00049556	-0.00012289	NaN	49.961	239	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25092			5847	1825	3393	3458							0.0521608427989122
FPEADKVRTM	10	Unmodified	_FPEADKVRTM_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.302798173	2	597.302798	1192.59104	1.8172	0.0010854	-2.168	-0.001295	-0.35083	-0.00020955	597.3011703171187	16.71	0.024021	16.71	16.686	16.71	0	1131	34	0.94059354	0.020172358	0.94059354	381.09714	0	8.173157						31	2	2	NaN	NaN	NaN	0.73114	1	16221	16221		5.9198	1.01	1	2010.5			5848	5340	3394	3459	4624	4624					0.00245153283003674
FPEADKVRTM	10	Unmodified						0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.302798	1192.59104	2.1043	0.0012569	-2.3344	-0.0013944	-0.23011	-0.00013744	597.300650297989	16.73	0.095791	16.717	16.693	16.789	-0.013296	1134	25	0.9387595	0.014671564	0.93724006	380.35403		5.944458	0.0037338	-5.8338E-05	-0.0016767	NaN	5.9198	57	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3025.5			5849	5340	3394	3459							0.00245153283003674
FPEAFDYGQL	10	Unmodified	_FPEAFDYGQL_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.7743964868	2	593.774396	1185.53424	0.79267	0.00047067	-6.6984	-0.0039773	-5.9057	-0.0035067	594.2714904673163	29.376	0.31368	29.368	29.296	29.61	-0.0077229	1167	100	0.91857195	0.0606609	0.9170525	372.20007	0	24.579468						495	14	2	NaN	NaN	NaN	0.38071	1	15407	15407		24.4	6.6013	1	60702			5850	5336	3395	3460	4625	4625					-0.05110571001864628
FPEALIPVQL	10	Unmodified	_FPEALIPVQL_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8289747462501	2	563.828975	1125.6434	1.7745	0.0010005	-2.2365	-0.001261	-0.46204	-0.00026051	563.8272204652602	34.396	0.217	34.396	34.324	34.541	0	1203	64	0.8965218	0.038610697	0.8965218	363.4877	0	15.654419						273	10	3	NaN	NaN	NaN	0.10581	1	13927	13927		45.165	22.047	1	30105			5851	4945	3396	3461	4626	4626					0.08560059688284127
FPEALIPVQL	10	Unmodified	_FPEALIPVQL_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8289747462501	2	563.828975	1125.6434	1.1158	0.0006291	-2.5233	-0.0014227	-1.4076	-0.00079363	563.8277930699518	34.419	0.21692	34.419	34.322	34.539	-0.00064468	1200	58	0.89836043	0.034937263	0.896841	364.23315	0	14.16507						287	10	3	NaN	NaN	NaN	0.20271	1	13492	13492		35.296	17.063	1	33778			5852	4945	3396	3461	4627	4627					0.08560059688284127
FPEAMSFI	8	Unmodified	_FPEAMSFI_					0	0	0		DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4437167178002	1	941.443717	940.43644	1.6406	0.0015445	-9.4481	-0.0088949	-7.8075	-0.0073504	941.4347252268681	31.065	0.28962	31.06	30.988	31.277	-0.0050716	402	124	1.3804773	0.07320833	1.3789579	280.52194	0	14.876404						634	13	3	NaN	NaN	NaN	0.59262	1	6685	6685		25.752	6.4671	1	96169			5853	275	3397	3462	4628	4628					-0.03616051131541553
FPEAMSFI	8	Unmodified						0	0	0		DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	DUSP7|p.I314M|1|0.15|ENSG00000164086|chr3:52053950-52053950|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	941.443717	940.43644	0.99319	0.00093503	-8.3464	-0.0078576	-7.3532	-0.0069226	941.4364201365345	31.066	0.26545	31.066	30.994	31.259	0	399	133	1.382264	0.07857764	1.382264	280.885		15.967499	0.0030587	0.0004796	0.0016531	NaN	25.752	639	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94785			5854	275	3397	3462							-0.03616051131541553
FPEDADIDL	9	Unmodified	_FPEDADIDL_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.4676828619	1	1034.46768	1033.46041	1.5333	0.0015861	3.4788	0.0035987	5.0121	0.0051848	1034.470824024481	27.109	0.28958	27.109	27.012	27.302	0	198	88	1.5015416	0.051474214	1.5015416	304.72626	0	10.446289						437	13	2	NaN	NaN	NaN	0.04947	1	9909	9909		47.136	22.175	1	62352			5855	4786	3398	3463	4629	4629					-0.05498539164182148
FPEDADIDL	9	Unmodified	_FPEDADIDL_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.4676828619	1	1034.46768	1033.46041	1.1058	0.0011439	2.8696	0.0029685	3.9754	0.0041124	1034.4700936560357	27.228	0.26545	27.218	27.17	27.436	-0.010124	195	91	1.5033154	0.053240657	1.501796	305.08624	0	10.804779						461	12	2	NaN	NaN	NaN	0.036546	1	9704	9704		52.624	30.498	1	49891			5856	4786	3398	3463	4630	4630					-0.05498539164182148
FPEDVVRVIF	10	Unmodified	_FPEDVVRVIF_					0	0	0		ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;ENSG00000146192|ENST00000274963|FGD2	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8373310946	2	610.837331	1219.66011	0.64838	0.00039606	-0.5561	-0.00033968	0.092287	5.6372E-05	610.8369052199187	30.462	0.072393	30.456	30.432	30.505	-0.0057545	1155	52	0.92591566	0.031202316	0.9243962	375.0549	0	12.638916						81	4	2	NaN	NaN	NaN	0.3742	1	16296	16296		24.393	12.345	1	9465.4			5857	3551	3399	3464	4631	4631					0.05906560574226205
FPEEAVLQQAF	11	Unmodified	_FPEEAVLQQAF_					0	0	0		ENST00000589343.1_1_19:55750771-55751051:-|nuORF;ENSG00000105063|ENST00000412770|PPP6R1	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.8218779956501	2	639.821878	1277.6292	1.7686	0.0011316	-2.0571	-0.0013162	-0.28846	-0.00018456	639.81930965497	29.715	0.12066	29.715	29.667	29.787	0	1152	76	0.92775106	0.045866013	0.92775106	375.6075	0	18.569244						208	6	3	NaN	NaN	NaN	0.16151	1	18372	18372		33.907	16.709	1	20668			5858	1511	3400	3465	4632	4632					0.0014936246934666997
FPEEAVLQQAF	11	Unmodified	_FPEEAVLQQAF_					0	0	0		ENST00000589343.1_1_19:55750771-55751051:-|nuORF;ENSG00000105063|ENST00000412770|PPP6R1	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	ENST00000589343.1_1_19:55750771-55751051:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.8218779956501	2	639.821878	1277.6292	1.4987	0.00095888	-2.0622	-0.0013195	-0.56355	-0.00036057	639.82055164269	29.714	0.09651	29.707	29.659	29.755	-0.0070648	1152	73	0.92775106	0.044028997	0.9262317	375.6075	0	17.8255						171	5	2	NaN	NaN	NaN	0.6011	1	17552	17552		13.949	3.5886	1	23983			5859	1511	3400	3465	4633	4633					0.0014936246934666997
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.26894696815	2	556.268947	1110.52334	1.6526	0.00091929	-1.4291	-0.00079497	0.22348	0.00012432	556.2680393683452	27.591	0.53091	27.591	27.398	27.929	0	1245	94	0.87076044	0.05707693	0.87076044	353.1011	0	23.145172						1059	23	3	NaN	NaN	NaN	0.036546	1	13293	13293		52.624	16.038	1	301180			5860	6120	3401	3466	4634	4634					-0.027499733761487732
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.5306174696998	1	1111.53062	1110.52334	2.0359	0.002263	-0.97668	-0.0010856	1.0592	0.0011774	1111.5290804908252	27.591	0.50679	27.591	27.422	27.929	0	99	100	1.5599792	0.058369517	1.5599792	316.29623	0	11.834778						868	22	3	NaN	NaN	NaN	0.017076	1	13294	13294		75.698	51.136	1	135400			5861	6120	3401	3466	4635	4635					-0.027499733761487732
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.26894696815	2	556.268947	1110.52334	1.5164	0.00084352	-1.1963	-0.00066546	0.32009	0.00017806	556.2681677364567	27.615	0.53093	27.605	27.34	27.87	-0.009552	1245	91	0.87076044	0.055232704	0.869241	353.1011	0	22.397339						1057	23	3	NaN	NaN	NaN	0.089764	1	12912	12912		37.302	12.902	1	311010			5862	6120	3401	3466	4636	4636					-0.027499733761487732
FPEELTQTF	9	Unmodified	_FPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.5306174696998	1	1111.53062	1110.52334	1.0641	0.0011828	0.34876	0.00038765	1.4128	0.0015704	1111.5311626757111	27.59	0.38608	27.581	27.436	27.822	-0.009552	99	94	1.5599792	0.0548203	1.5584598	316.29623	0	11.115204						644	17	4	NaN	NaN	NaN	0.002766	1	12913	12913		108.71	69.253	1	98948			5863	6120	3401	3466	4637	4637					-0.027499733761487732
FPEELTQTFM	10	Unmodified	_FPEELTQTFM_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.7891892712499	2	621.789189	1241.56383	0.69484	0.00043204	-1.0287	-0.00063964	-0.33386	-0.00020759	621.7889270295568	30.245	0.072372	30.238	30.238	30.311	-0.0064106	1176	52	0.9130621	0.031219184	0.91154265	369.77536	0	12.6432495						63	4	2	NaN	NaN	NaN	0.20271	1	16814	16814		35.296	16.133	1	8207.7			5864	6120	3402	3467	4638	4638					-0.047293750480548624
FPEEMATYL	9	Unmodified	_FPEEMATYL_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.4968745002998	1	1100.49687	1099.4896	1.5641	0.0017213	5.0056	0.0055087	6.5697	0.0072299	1100.5039435982583	28.749	0.21719	28.74	28.692	28.909	-0.0083504	108	82	1.5546752	0.047746778	1.5531558	315.25964	0	9.682159						241	10	2	NaN	NaN	NaN	0.062072	1	12484	12484		41.785	23.986	1	24774			5865	2819	3403	3468	4639	4639					-0.056167181395721855
FPEEVIATIF	10	Unmodified	_FPEEVIATIF_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.3106148176	2	583.310615	1164.60668	1.1078	0.00064622	-4.0283	-0.0023498	-2.9205	-0.0017035	583.3084305807595	35.289	0.26539	35.289	35.192	35.458	0	1221	70	0.885486	0.042297065	0.885486	358.86798	0	17.14209						344	12	2	NaN	NaN	NaN	0.2358	1	15305	15305		32.453	14.654	1	65617			5866	5475	3404	3469	4640	4640					0.030957630717011853
FPEEVIATIF	10	Unmodified	_FPEEVIATIF_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3106148176	2	583.310615	1164.60668	1.0459	0.00061006	-3.4134	-0.0019911	-2.3675	-0.001381	583.3086529701143	35.288	0.33775	35.287	35.143	35.48	-4.5776E-05	1218	73	0.8873258	0.04413849	0.8858064	359.61362	0	17.888367						330	15	2	NaN	NaN	NaN	0.37681	1	14776	14776		24.562	6.763	1	59557			5867	5475	3404	3469	4641	4641					0.030957630717011853
FPEGLAVSL	9	Unmodified	_FPEGLAVSL_					0	0	0		ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11;ENST00000579988.1_1_17:70643725-70721657:-|nuORF	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5087598156	1	932.50876	931.501483	2.0904	0.0019493	-1.422	-0.0013261	0.66838	0.00062327	932.5075147085377	30.077	0.3379	30.077	29.811	30.149	0	303	49	1.4393384	0.028488636	1.4393384	292.52335	0	5.7898865						371	15	3	NaN	NaN	NaN	0.04947	1	6634	6634		47.136	25.009	1	43624			5868	2816	3405	3470	4642	4642					0.032992666659424685
FPEGLAVSL	9	Unmodified						0	0	0		ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11;ENST00000579988.1_1_17:70643725-70721657:-|nuORF	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	932.50876	931.501483	1.1596	0.0010813	-1.2973	-0.0012097	-0.1377	-0.0001284	932.5070486440235	30.197	0.096527	30.19	30.19	30.287	-0.0064106	303	49	1.4393384	0.028482556	1.437819	292.52335		5.788666	0.056648	8.9173E-05	-0.00075972	NaN	47.136	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9179.1			5869	2816	3405	3470							0.032992666659424685
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5298891881998	1	1148.52989	1147.52261	2.6128	0.0030008	-1.9319	-0.0022188	0.68088	0.00078201	1148.527654884997	34.71	0.096539	34.71	34.614	34.71	0	60	64	1.582944	0.03708136	1.582944	320.8254	0	7.515503						176	5	3	NaN	NaN	NaN	0.01047	1	14709	14709		91.429	66.867	1	18685			5870	789	3406	3471	4643	4643					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5298891881998	1	1148.52989	1147.52261	2.4421	0.0028048	-1.5658	-0.0017983	0.87633	0.0010065	1148.5279238821859	34.879	0.1687	34.879	34.831	34.999	0	60	94	1.582944	0.054756522	1.582944	320.8254	0	11.09787						342	8	3	NaN	NaN	NaN	0.030669	1	14710	14710		58.235	31.504	1	76732			5871	789	3406	3471	4644	4644					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5298891881998	1	1148.52989	1147.52261	1.9093	0.0021929	-0.98222	-0.0011281	0.92712	0.0010648	1148.528511201422	35.048	0.19306	35.048	35.048	35.241	0	63	91	1.5811787	0.052998543	1.5811787	320.4676	0	10.741577						312	9	3	NaN	NaN	NaN	0.036546	1	14711	14711		52.624	33.339	1	30644			5872	789	3406	3471	4645	4645					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5298891881998	1	1148.52989	1147.52261	2.4918	0.0028619	-1.1924	-0.0013695	1.2994	0.0014923	1148.5284609407468	34.758	0.024128	34.758	34.758	34.782	0	60	82	1.582944	0.047681093	1.582944	320.8254	0	9.663849						133	2	3	NaN	NaN	NaN	0.014046	1	14712	14712		80.639	51.972	1	27925			5873	789	3406	3471	4646	4646					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1148.5298891881998	1	1148.52989	1147.52261	2.2933	0.0026339	-0.56468	-0.00064855	1.7286	0.0019854	1148.5288723290098	34.829	0.26513	34.828	34.636	34.901	-0.0006485	60	100	1.582944	0.05829537	1.5814246	320.8254	0	11.815094						594	12	3	NaN	NaN	NaN	0.0018626	1	14219	14219		111.43	74.131	1	124250			5874	789	3406	3471	4647	4647					-0.045247680252032296
FPEGLFYEF	9	Unmodified	_FPEGLFYEF_					0	0	0		LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant;ENSG00000169756|ENST00000544547|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000169756|P48059|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENSG00000256671|ENST00000632897|LIMS4	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	LIMS2|p.E59G|1|0.12|ENSG00000072163|chr2:127654892-127654892|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1148.5298891881998	1	1148.52989	1147.52261	1.8434	0.0021172	1.1217	0.0012883	2.9651	0.0034055	1148.5302350828115	35.094	0.16895	35.094	35.07	35.239	-4.5776E-05	60	67	1.582944	0.038849115	1.5814246	320.8254	0	7.87381						242	8	3	NaN	NaN	NaN	0.18779	1	14220	14220		26.115	9.5308	1	25531			5875	789	3406	3471	4648	4648					-0.045247680252032296
FPEGSVEL	8	Unmodified	_FPEGSVEL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4301751436	1	877.430175	876.422899	1.4471	0.0012697	-0.81008	-0.00071079	0.63699	0.00055891	877.4295956987664	24.791	0.14478	24.791	24.671	24.816	0	477	43	1.3357477	0.02507925	1.3357477	271.71854	0	5.101654						135	7	2	NaN	NaN	NaN	0.30832	1	5747	5747		41.46	17.61	1	11018			5876	3667	3407	3472	4649	4649					-0.020255856391486304
FPEGSVEL	8	Unmodified	_FPEGSVEL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4301751436	1	877.430175	876.422899	1.5183	0.0013322	-0.54227	-0.00047581	0.97602	0.00085639	877.4291623604344	24.864	0.072378	24.864	24.84	24.912	0	474	52	1.3375392	0.030451775	1.3375392	272.08295	0	6.194519						90	4	2	NaN	NaN	NaN	0.14214	1	5748	5748		55.947	22.249	1	11490			5877	3667	3407	3472	4650	4650					-0.020255856391486304
FPEGSVEL	8	Unmodified	_FPEGSVEL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4301751436	1	877.430175	876.422899	1.1718	0.0010282	-0.69429	-0.00060919	0.47752	0.00041899	877.4292197182858	24.912	0.21711	24.9	24.731	24.948	-0.012392	474	46	1.3375392	0.026869178	1.3360198	272.08295	0	5.4657593						209	10	2	NaN	NaN	NaN	0.071487	1	5622	5622		71.993	30.533	1	23338			5878	3667	3407	3472	4651	4651					-0.020255856391486304
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.78710993155	2	535.78711	1069.55967	2.8322	0.0015175	-1.4788	-0.00079234	1.3534	0.00072513	535.7857728790175	28.291	0.38609	28.291	28.122	28.508	0	1257	112	0.86339295	0.06816089	0.86339295	350.27783	0	27.652802						1303	17	6	NaN	NaN	NaN	0.00011853	1	11551	11551		121.78	71.949	1	2364600			5879	3133	3408	3473	4652	4652					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5669433965	1	1070.56694	1069.55967	1.9919	0.0021325	-0.56061	-0.00060017	1.4313	0.0015323	1070.566335772514	28.315	0.19303	28.315	28.194	28.388	0	105	64	1.5564433	0.037128568	1.5564433	315.72772	0	7.5315857						257	9	2	NaN	NaN	NaN	0.025843	1	11552	11552		64.55	43.597	1	34113			5880	3133	3408	3473	4653	4653					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.78710993155	2	535.78711	1069.55967	1.9727	0.0010569	0.91352	0.00048945	2.8862	0.0015464	536.2898846771825	28.918	0.38613	28.918	28.75	29.136	0	1260	97	0.8615505	0.0589723	0.8615505	349.53036	0	23.924988						568	17	2	NaN	NaN	NaN	0.47587	1	11553	11553		10.605	0.5534	1	133160			5881	3133	3408	3473	4654	4654					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5669433965	1	1070.56694	1069.55967	0.95801	0.0010256	-0.42347	-0.00045335	0.53454	0.00057226	1070.5682474257535	28.314	0.19302	28.305	28.209	28.402	-0.0089779	111	70	1.5529068	0.040673137	1.5513873	315.0103	0	8.25061						305	9	3	NaN	NaN	NaN	0.025843	1	11262	11262		64.55	41.432	1	27096			5882	3133	3408	3473	4655	4655					0.027669483112276794
FPEHIFPAL	9	Unmodified	_FPEHIFPAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.78710993155	2	535.78711	1069.55967	1.9666	0.0010537	-0.32414	-0.00017367	1.6425	0.00088002	535.7863238827913	28.314	0.3861	28.305	28.137	28.523	-0.0089779	1257	112	0.86339295	0.068175614	0.8618735	350.27783	0	27.658813						1363	17	6	NaN	NaN	NaN	0.002833	1	11263	11263		108.51	63.877	1	2499100			5883	3133	3408	3473	4656	4656					0.027669483112276794
FPEHIFPAL	9	Unmodified						0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.78711	1069.55967	0.93686	0.00050196	0.32144	0.00017223	1.2583	0.00067418	536.2890227930446	28.99	0.26546	28.982	28.934	29.2	-0.0077229	1263	82	0.85970795	0.04976058	0.8581885	348.78284		20.187805	0.031968	-0.00026677	-0.001681	NaN	10.605	421	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78618			5884	3133	3408	3473							0.027669483112276794
FPEILQPVV	9	Unmodified	_FPEILQPVV_					0	0	0		ENSG00000126062|ENST00000266025|TMEM115	ENSG00000126062|ENST00000266025|TMEM115	ENSG00000126062|ENST00000266025|TMEM115	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5979091739	1	1041.59791	1040.59063	0.85087	0.00088626	-3.221	-0.003355	-2.3701	-0.0024687	1041.5968200036914	31.549	0.072437	31.549	31.525	31.597	0	156	112	1.5263584	0.06556952	1.5263584	309.73468	0	13.305664						149	4	2	NaN	NaN	NaN	0.14787	1	10249	10249		28.896	11.097	1	14041			5885	2491	3409	3474	4657	4657					0.07196101625481788
FPEILQPVV	9	Unmodified	_FPEILQPVV_					0	0	0		ENSG00000126062|ENST00000266025|TMEM115	ENSG00000126062|ENST00000266025|TMEM115	ENSG00000126062|ENST00000266025|TMEM115	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5979091739	1	1041.59791	1040.59063	0.74913	0.00078029	-1.4472	-0.0015073	-0.69802	-0.00072706	1041.597218183076	31.548	0.048265	31.544	31.519	31.568	-0.0044174	156	88	1.5263584	0.051403165	1.5248389	309.73468	0	10.430939						135	3	3	NaN	NaN	NaN	0.16939	1	10036	10036		27.296	5.4612	1	11786			5886	2491	3409	3474	4658	4658					0.07196101625481788
FPEIPVEFL	9	Unmodified	_FPEIPVEFL_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.79460061265	2	545.794601	1089.57465	0.90478	0.00049382	-2.3037	-0.0012574	-1.3989	-0.00076353	545.7928538744411	35.239	0.169	35.239	35.191	35.36	-4.1962E-05	1239	61	0.87444305	0.03680587	0.8729236	354.678	0	14.92865						204	8	3	NaN	NaN	NaN	0.078597	1	12074	12074		38.918	5.2196	1	24205			5887	5698	3410	3475	4659	4659					0.03344395388558041
FPEIQGFLQL	10	Unmodified	_FPEIQGFLQL_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.3240565438501	2	596.324057	1190.63356	0.86551	0.00051613	-1.9914	-0.0011875	-1.1259	-0.00067141	596.322986896442	35.723	0.16878	35.723	35.651	35.82	0	1158	52	0.92408	0.031209052	0.92408	374.41345	0	12.645111						318	8	4	NaN	NaN	NaN	0.28195	1	16170	16170		28.495	5.4095	1	51772			5888	3342	3411	3476	4660	4660					0.04586871682909077
FPEIQGFLQL	10	Unmodified	_FPEIQGFLQL_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000473071.1_1_17:37899536-37900469:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.3240565438501	2	596.324057	1190.63356	0.49733	0.00029657	-0.67866	-0.0004047	-0.18133	-0.00010813	596.3231887490934	35.698	0.24104	35.698	35.626	35.867	0.00053024	1155	70	0.92591566	0.04222858	0.9243962	375.1572	0	17.109955						343	11	4	NaN	NaN	NaN	0.12158	1	15559	15559		42.995	6.7599	1	51640			5889	3342	3411	3476	4661	4661					0.04586871682909077
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.79968599055	2	499.799686	997.584819	0.6779	0.00033881	-1.5647	-0.00078204	-0.8868	-0.00044322	499.7983851326968	35.217	0.0965	35.217	35.168	35.265	0	1299	34	0.8375814	0.020296931	0.8375814	340.11765	0	8.242004						64	5	2	NaN	NaN	NaN	0.51576	1	8497	8497		8.962	2.0988	1	5373.2			5890	1785	3412	3477	4662	4662					0.08593003113799114
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5920955145001	1	998.592096	997.584819	0.99763	0.00099622	-0.27171	-0.00027133	0.72591	0.00072489	998.5916830667741	35.217	0.1448	35.217	35.144	35.289	0	180	88	1.5121819	0.051419616	1.5121819	307.03094	0	10.440155						338	7	4	NaN	NaN	NaN	0.030391	1	8498	8498		58.599	39.481	1	51288			5891	1785	3412	3477	4663	4663					0.08593003113799114
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.79968599055	2	499.799686	997.584819	1.13	0.00056475	-2.7872	-0.0013931	-1.6573	-0.00082832	499.79961693071357	35.191	0.072441	35.191	35.167	35.239	-4.5776E-05	1296	31	0.8394264	0.01844871	0.83790696	340.86685	0	7.491516						63	4	2	NaN	NaN	NaN	0.27442	1	8316	8316		20.555	9.007	1	4975.9			5892	1785	3412	3477	4664	4664					0.08593003113799114
FPEIVAPLL	9	Unmodified	_FPEIVAPLL_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5920955145001	1	998.592096	997.584819	1.1926	0.001191	0.43657	0.00043596	1.6292	0.0016269	998.5921471223074	35.215	0.14483	35.215	35.143	35.287	-4.5776E-05	174	85	1.5157272	0.049633265	1.5142077	307.75076	0	10.077484						348	7	3	NaN	NaN	NaN	0.014943	1	8317	8317		78.398	39.48	1	50615			5893	1785	3412	3477	4665	4665					0.08593003113799114
FPELDSPQL	9	Unmodified	_FPELDSPQL_					0	0	0		ENST00000446672.2_1_13:19968469-19969442:+|nuORF;ENSG00000102699|ENST00000381989|PARP4	ENST00000446672.2_1_13:19968469-19969442:+|nuORF;ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.263664625	2	523.263665	1044.51278	1.062	0.00055571	-1.4753	-0.00077199	-0.41332	-0.00021628	523.2627981360416	27.687	0.24128	27.677	27.557	27.798	-0.009552	1263	67	0.85970795	0.04054779	0.8581885	348.88916	0	16.45523						251	11	2	NaN	NaN	NaN	0.074859	1	10184	10184		39.459	9.8604	1	41407			5894	1386;7025	3413	3478	4666	4666					-0.0076995603058094275
FPELHMVLL	9	Unmodified	_FPELHMVLL_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.8044454049501	2	549.804445	1097.59434	0.49156	0.00027026	-1.5889	-0.00087361	-1.0974	-0.00060335	549.8035729603197	31.308	0.16891	31.308	31.211	31.38	0	1203	43	0.8965218	0.025741875	0.8965218	363.60007	0	10.440063						156	8	3	NaN	NaN	NaN	0.10956	1	12759	12759		34.439	16.404	1	21246			5895	2115	3414	3479	4667	4667					0.04944448127685064
FPELKVIEM	9	Unmodified	_FPELKVIEM_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3017355405001	2	553.301736	1104.58892	1.1967	0.00066213	-1.9999	-0.0011065	-0.80319	-0.00044441	553.3004741179383	27.567	0.14478	27.567	27.543	27.688	0	1212	88	0.8910048	0.053365707	0.8910048	361.33417	0	21.641663						231	7	3	NaN	NaN	NaN	0.46713	1	13047	13047		10.965	2.7203	1	39081			5896	3210	3415	3480	4668	4668					0.040807245452015195
FPELKVIEM	9	Unmodified	_FPELKVIEM_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3017355405001	2	553.301736	1104.58892	1.0587	0.00058578	-1.6629	-0.00092008	-0.6042	-0.0003343	553.3007425833367	27.615	0.21714	27.605	27.557	27.774	-0.009552	1212	91	0.8910048	0.05519694	0.88948536	361.33417	0	22.384308						289	10	4	NaN	NaN	NaN	0.057383	1	12704	12704		43.776	17.661	1	43495			5897	3210	3415	3480	4669	4669					0.040807245452015195
FPELLPLSEL	10	Unmodified	_FPELLPLSEL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3262648818001	2	579.326265	1156.63798	1.4523	0.00084138	-2.0316	-0.001177	-0.57925	-0.00033557	579.3253151768438	36.952	0.1683	36.952	36.88	37.048	0	1209	61	0.892844	0.036770105	0.892844	361.87918	0	14.90332						233	8	3	NaN	NaN	NaN	0.011153	1	15044	15044		69.782	28.825	1	28115			5898	471	3416	3481	4670	4670					0.06592336105813956
FPELLPLSEL	10	Unmodified	_FPELLPLSEL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3262648818001	2	579.326265	1156.63798	1.1298	0.00065452	-0.45261	-0.00026221	0.67719	0.00039231	579.326205020474	36.95	0.16816	36.952	36.88	37.048	0.0022507	1209	61	0.892844	0.036770105	0.8913246	361.87918	0	14.90332						220	8	3	NaN	NaN	NaN	0.040041	1	14545	14545		55.413	11.637	1	22426			5899	471	3416	3481	4671	4671					0.06592336105813956
FPELVLPVVL	10	Unmodified	_FPELVLPVVL_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3495430128501	2	563.349543	1124.68453	1.3742	0.00077415	-5.6165	-0.0031641	-4.2423	-0.0023899	563.3453768856441	40.681	0.04797	40.681	40.657	40.705	0	1209	28	0.892844	0.016552806	0.892844	362.0003	0	6.711273						32	3	2	NaN	NaN	NaN	0.69717	1	13881	13881		8.2448	3.0559	1	2284.4			5900	5574	3417	3482	4672	4672					0.12717820727743856
FPELVLPVVL	10	Unmodified						0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.349543	1124.68453	1.6049	0.0009041	-6.1811	-0.0034821	-4.5762	-0.002578	563.3452851988112	40.607	0.096073	40.613	40.565	40.661	0.0067596	1206	28	0.894683	0.016551018	0.89316356	362.74594		6.7105713	-0.033658	-0.00026815	0.00015978	NaN	8.2448	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3642			5901	5574	3417	3482							0.12717820727743856
FPELYDFAL	9	Unmodified	_FPELYDFAL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.5455392524	1	1114.54554	1113.53826	1.22	0.0013597	4.7237	0.0052647	5.9437	0.0066245	1114.549581372797	35.53	0.072388	35.53	35.458	35.53	0	60	73	1.582944	0.04238093	1.582944	320.94183	0	8.592712						184	4	4	NaN	NaN	NaN	0.014046	1	13423	13423		80.639	30.806	1	15724			5902	460	3418	3483	4673	4673					-0.013964815081408233
FPELYDFAL	9	Unmodified	_FPELYDFAL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.5455392524	1	1114.54554	1113.53826	0.6381	0.00071119	3.3117	0.003691	3.9498	0.0044022	1114.546795689857	35.553	0.21709	35.553	35.481	35.698	0.00052643	57	91	1.5847093	0.05299294	1.5831898	321.29974	0	10.744324						488	10	4	NaN	NaN	NaN	0.028349	1	13041	13041		61.271	26.832	1	45043			5903	460	3418	3483	4674	4674					-0.013964815081408233
FPELYPFLL	9	Unmodified	_FPELYPFLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.8127933658001	2	569.812793	1137.61103	1.6661	0.00094936	-5.5584	-0.0031672	-3.8923	-0.0022179	569.8093739350066	41.955	0.071968	41.955	41.955	42.027	0	1194	22	0.902037	0.012867451	0.902037	365.67728	0	5.216339						30	4	2	NaN	NaN	NaN	0.49672	1	14375	14375		9.746	1.4557	1	1575.4			5904	2053	3419	3484	4675	4675					0.04773272285274288
FPELYPFLL	9	Unmodified	_FPELYPFLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.8127933658001	2	569.812793	1137.61103	1.059	0.00060343	-4.1103	-0.0023421	-3.0513	-0.0017387	569.8101025966831	40.537	0.16826	40.537	40.392	40.561	0	1194	70	0.902037	0.042297065	0.902037	365.67725	0	17.14682						153	8	2	NaN	NaN	NaN	0.032417	1	14376	14376		55.947	30.986	1	40099			5905	2053	3419	3484	4676	4676					0.04773272285274288
FPELYPFLL	9	Unmodified	_FPELYPFLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.8127933658001	2	569.812793	1137.61103	0.96232	0.00054834	-1.9975	-0.0011382	-1.0352	-0.00058987	569.8116621252332	40.535	0.43233	40.541	40.397	40.829	0.0067596	1194	43	0.902037	0.02573353	0.9005176	365.67725	0	10.432098						526	19	4	NaN	NaN	NaN	0.03623	1	13907	13907		52.758	23.863	1	104070			5906	2053	3419	3484	4677	4677					0.04773272285274288
FPENKEYLITL	11	Unmodified	_FPENKEYLITL_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.8662854993	2	683.866285	1365.71802	1.9716	0.0013483	-3.9359	-0.0026916	-1.9643	-0.0013433	684.3644394445233	26.601	0.24134	26.601	26.408	26.65	0	1023	109	1.0064877	0.06583744	1.0064877	407.20346	0	26.636383						380	11	2	NaN	NaN	NaN	0.066897	1	19754	19754		45.55	9.3152	1	59171			5907	4684	3420	3485	4678	4678					0.049787777089932206
FPEPAGAWSSG	11	Unmodified	_FPEPAGAWSSG_					0	0	0			REV__ENST00000329047.12_1_17:75315617-75315737:+|nuORF	REV__ENST00000329047.12_1_17:75315617-75315737:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.251088566	2	553.251089	1104.48762	0.95444	0.00052805	6.1216	0.0033868	7.0761	0.0039148	553.2552680709598	34.155	0.19299	34.155	34.083	34.276	0	1269	109	0.8560222	0.066286445	0.8560222	347.14783	0	26.881561						345	6	3	NaN	NaN	NaN	0.51407	1	13025	13025		17.97	1.3855	1	66918	+		5908	11738	3421	3486	4679	4679					-0.06044010833147695
FPEPAGAWSSG	11	Unmodified						0	0	0			REV__ENST00000329047.12_1_17:75315617-75315737:+|nuORF	REV__ENST00000329047.12_1_17:75315617-75315737:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.251089	1104.48762	0.95444	0.00052805	6.1216	0.0033868	7.0761	0.0039148	553.2552680709598	34.155	0.19299	34.155	34.083	34.276	0	1269	109	0.8560222	0.066286445	0.8560222	347.14783		26.881561	0.013298	0.00038235	-0.00016177	NaN	17.97	345	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66918	+		5909	11738	3421	3486							-0.06044010833147695
FPEPEHSSF	9	Unmodified	_FPEPEHSSF_					0	0	0		nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.73781401525	2	538.737814	1075.46108	1.897	0.001022	0.41428	0.00022319	2.3113	0.0012452	538.7379631720825	19.18	0.35988	19.18	19.036	19.396	0	1272	46	0.854179	0.027653694	0.854179	346.51556	0	11.218292						325	16	2	NaN	NaN	NaN	0.04947	1	11770	11770		47.136	20.404	1	54622			5910	4144	3422	3487	4680	4680					-0.0736369972448756
FPEPEHSSF	9	Unmodified						0	0	0		nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.737814	1075.46108	1.3908	0.0007493	2.5297	0.0013628	3.9205	0.0021121	538.7392773416841	19.202	0.28846	19.188	19.068	19.356	-0.014141	1272	55	0.854179	0.033179045	0.8526596	346.51556		13.459778	0.0038872	0.0013067	-0.00075972	NaN	47.136	329	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45586			5911	4144	3422	3487							-0.0736369972448756
FPEQGTLDL	9	Unmodified	_FPEQGTLDL_					0	0	0		nc|ENSG816|P62685|ERVK-8_gag;nc|ENSG846|Q9YNA8|ERVK-19_gag;nc|ENSG841|P62683|ERVK-21_gag;nc|ENSG838|P63145|ERVK-24_gag;nc|ENSG827|Q7LDI9|ERVK-6_gag;nc|ENSG820|P63130|ERVK-7_gag;nc|ENSG810|P63126|ERVK-9_gag;nc|ENSG800|P62684|HERVK_113_gag;nc|ENSG829|Q9HDB9|ERVK-5_gag;nc|ENSG809|P63128|ERVK-9_pol	nc|ENSG816|P62685|ERVK-8_gag	nc|ENSG816|P62685|ERVK-8_gag	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.25583959290003	2	510.25584	1018.49713	0.90147	0.00045998	-1.1571	-0.00059042	-0.25564	-0.00013044	510.2551713015367	28.121	0.19311	28.112	28.04	28.233	-0.0089779	1284	43	0.8468043	0.025817096	0.8452849	343.76675	0	10.480621						238	9	3	NaN	NaN	NaN	0.27608	1	9126	9126		20.449	0	1	44368			5912	8066	3423	3488	4681	4681					-0.0113824254760857
FPEQIAEKL	9	Unmodified	_FPEQIAEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7951319289	2	537.795132	1073.57571	2.2209	0.0011944	-3.5716	-0.0019208	-1.3507	-0.0007264	537.7934855843254	22.019	0.40995	22.019	21.898	22.308	0	1293	94	0.84127116	0.05713862	0.84127116	341.28683	0	23.179993						788	18	3	NaN	NaN	NaN	0.017836	1	11722	11722		74.737	24.422	1	184720			5913	2072	3424	3489	4682	4682					0.04186609757448423
FPEQIAEKL	9	Unmodified	_FPEQIAEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7951319289	2	537.795132	1073.57571	1.2783	0.00068744	-2.4753	-0.0013312	-1.197	-0.00064377	537.7938694490476	22.042	0.45792	22.029	21.86	22.318	-0.013731	1293	94	0.84127116	0.05714482	0.8397517	341.28683	0	23.182526						574	20	2	NaN	NaN	NaN	0.021916	1	11418	11418		69.574	24.941	1	161250			5914	2072	3424	3489	4683	4683					0.04186609757448423
FPERALAA	8	Unmodified	_FPERALAA_					0	0	0		ENST00000337554.7_1_22:43547558-43555226:+|nuORF;ENST00000583777.5_1_22:43547558-43557149:+|nuORF	ENST00000337554.7_1_22:43547558-43555226:+|nuORF	ENST00000337554.7_1_22:43547558-43555226:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4781283891999	1	874.478128	873.470852	1.331	0.0011639	-9.0595	-0.0079223	-7.7285	-0.0067584	874.4705809967045	29.063	0.16896	29.063	28.991	29.16	0	387	67	1.389409	0.03928876	1.389409	282.6491	0	7.992584						192	8	2	NaN	NaN	NaN	0.75561	1	5717	5717		15.175	2.5875	1	15081			5915	6532	3425	3490	4684	4684					0.029055330715550554
FPERALAA	8	Unmodified						0	0	0		ENST00000337554.7_1_22:43547558-43555226:+|nuORF;ENST00000583777.5_1_22:43547558-43557149:+|nuORF	ENST00000337554.7_1_22:43547558-43555226:+|nuORF	ENST00000337554.7_1_22:43547558-43555226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	874.478128	873.470852	0.90209	0.00078886	-7.7289	-0.0067587	-6.8268	-0.0059699	874.4719256341072	29.087	0.096539	29.079	29.055	29.151	-0.0077229	384	67	1.3911947	0.039280415	1.3896753	283.0124		7.9908447	0.0078101	0.00074246	0.00013316	NaN	15.175	119	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11079			5916	6532	3425	3490							0.029055330715550554
FPERKEREM	9	Unmodified	_FPERKEREM_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.87300694099997	3	407.873007	1220.59719	1.2851	0.00052417	0.62777	0.00025605	1.9129	0.00078022	407.8733367274816	11.91	0.072026	11.902	11.854	11.926	-0.0081854	1485	40	0.72280174	0.024151623	0.7212823	439.16336	0	14.674164						62	4	2	NaN	NaN	NaN	0.27507	1	16312	16312		18.558	8.9876	1	7328.3			5917	1163	3426	3491	4685	4685					-0.004283284854636804
FPESDSQKR	9	Unmodified	_FPESDSQKR_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.26726994645	2	547.26727	1092.51999	1.0988	0.00060132	-6.0324	-0.0033013	-4.9336	-0.0027	547.2634593907488	27.615	0.14479	27.605	27.484	27.629	-0.009552	1260	91	0.8615505	0.055286467	0.8600311	349.43698	0	22.423676						325	7	3	NaN	NaN	NaN	0.25448	1	12182	12182		21.835	4.036	1	43298			5918	408	3427	3492	4686	4686					-0.022572234301378558
FPESPSIEF	9	Unmodified	_FPESPSIEF_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4935036819	1	1052.4935	1051.48623	1.3441	0.0014146	0.86831	0.00091389	2.2124	0.0023285	1053.4974513269967	28.242	0.096512	28.233	28.209	28.305	-0.0089779	213	55	1.4926696	0.031947732	1.4911501	302.85736	0	6.482086						143	5	3	NaN	NaN	NaN	0.074859	1	10461	10461		39.459	5.02	1	14447			5919	3855	3428	3493	4687	4687					-0.03745644921900748
FPETEFIAV	9	Unmodified	_FPETEFIAV_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5298891881998	1	1052.52989	1051.52261	2.3308	0.0024532	0.21797	0.00022942	2.5488	0.0026826	1052.5292367691184	30.198	0.16893	30.198	30.101	30.27	0	147	67	1.5316714	0.038972855	1.5316714	310.77054	0	7.90744						190	8	2	NaN	NaN	NaN	0.36492	1	10687	10687		15.175	0	1	16041			5920	2920	3429	3494	4688	4688					-0.0010876802521124773
FPETLPESSLF	11	Unmodified	_FPETLPESSLF_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8162613015	2	633.816261	1265.61797	0.74125	0.00046981	-1.9431	-0.0012316	-1.2019	-0.00076177	634.3167563667749	31.572	0.26548	31.568	31.471	31.737	-0.0044155	1146	61	0.93142134	0.03669876	0.9299019	377.1317	0	14.859283						298	12	2	NaN	NaN	NaN	0.59385	1	17322	17322		14.425	2.3763	1	43681			5921	5594	3430	3495	4689	4689					-0.0042145962481754395
FPETTEEEL	9	Unmodified	_FPETTEEEL_					0	0	0		nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENSG00000023734|ENST00000419869|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.4888122344998	1	1094.48881	1093.48154	1.5494	0.0016958	-0.09199	-0.00010068	1.4574	0.0015951	1094.4886661357757	22.597	0.1206	22.583	22.535	22.655	-0.01354	144	52	1.533442	0.03010416	1.5319226	310.97516	0	6.105011						152	6	3	NaN	NaN	NaN	0.014046	1	12210	12210		80.639	36.336	1	11425			5922	7898	3431	3496	4690	4690					-0.06146573855335191
FPETWLWDLFP	11	Unmodified	_FPETWLWDLFP_					0	0	0		nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.8557208130001	2	725.855721	1449.69689	0.61688	0.00044777	4.3809	0.0031799	4.9978	0.0036277	725.8596103914215	33.431	0.096535	33.431	33.407	33.504	0	1020	55	1.0083145	0.03289026	1.0083145	407.7056	0	13.298981						126	5	3	NaN	NaN	NaN	0.63005	1	20380	20380		12.049	1.6885	1	11155			5923	4491	3432	3497	4691	4691					-0.009971875998644464
FPEVDVFVL	9	Unmodified	_FPEVDVFVL_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5662746945	1	1064.56627	1063.559	1.7453	0.001858	-0.90654	-0.00096507	0.83873	0.00089288	1064.565420732588	36.398	0.28938	36.398	36.254	36.543	0	114	64	1.5511382	0.037144184	1.5511382	314.67416	0	7.535309						444	13	3	NaN	NaN	NaN	0.094712	1	11288	11288		36.586	16.031	1	50907			5924	2792	3433	3498	4692	4692					0.02976108871530414
FPEVDVFVL	9	Unmodified	_FPEVDVFVL_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5662746945	1	1064.56627	1063.559	1.5156	0.0016134	0.04391	4.6746E-05	1.5595	0.0016602	1064.56630489592	36.396	0.38549	36.398	36.157	36.543	0.0016785	114	67	1.5511382	0.038915038	1.5496187	314.67416	0	7.894562						301	17	2	NaN	NaN	NaN	0.14301	1	11024	11024		29.598	4.6373	1	40886			5925	2792	3433	3498	4693	4693					0.02976108871530414
FPEVEDVVM	9	Unmodified	_FPEVEDVVM_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1;ENST00000556724.1_1_14:67827147-67841270:+|nuORF	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.4968745003	1	1064.49687	1063.4896	1.7431	0.0018556	1.8395	0.0019581	3.5826	0.0038137	1064.4980736450402	28.87	0.24138	28.87	28.822	29.063	0	177	73	1.5139546	0.042529345	1.5139546	307.1311	0	8.627808						219	11	2	NaN	NaN	NaN	0.028349	1	11270	11270		61.271	21.117	1	25238			5926	2844	3434	3499	4694	4694					-0.039607181395467705
FPEVEDVVM	9	Unmodified	_FPEVEDVVM_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1;ENST00000556724.1_1_14:67827147-67841270:+|nuORF	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.4968745003	1	1064.49687	1063.4896	1.0898	0.0011601	3.2959	0.0035085	4.3857	0.0046686	1064.5002108609212	28.894	0.14481	28.885	28.813	28.958	-0.0083485	174	64	1.5157272	0.03722298	1.5142077	307.49066	0	7.5513306						175	7	2	NaN	NaN	NaN	0.062072	1	11010	11010		41.785	10.223	1	21476			5927	2844	3434	3499	4695	4695					-0.039607181395467705
FPEVEDVVM	9	Oxidation (M)	_FPEVEDVVM(Oxidation (M))_		FPEVEDVVM(1)		FPEVEDVVM(45)	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1;ENST00000556724.1_1_14:67827147-67841270:+|nuORF	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4917891224	1	1080.49179	1079.48451	1.68	0.0018153	-0.22578	-0.00024396	1.4542	0.0015713	1080.4916860494102	25.467	0.16892	25.467	25.371	25.539	0	189	76	1.5068626	0.04433191	1.5068626	305.63437	0	8.99176						257	8	3	NaN	NaN	NaN	0.055351	1	11940	11940		44.638	14.028	1	20361			5928	2844	3434	3500	4696	4696		328			-0.052050220021556015
FPEVEDVVM	9	Oxidation (M)	_FPEVEDVVM(Oxidation (M))_		FPEVEDVVM(1)		FPEVEDVVM(44)	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1;ENST00000556724.1_1_14:67827147-67841270:+|nuORF	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7495327945	2	540.749533	1079.48451	1.7741	0.00095936	-0.58509	-0.00031639	1.189	0.00064297	540.7494179892093	25.467	0.14478	25.455	25.407	25.551	-0.012011	1293	76	0.84127116	0.046094477	0.8397517	341.26315	0	18.698303						158	7	2	NaN	NaN	NaN	0.056143	1	11637	11637		44.302	17.571	1	22458			5929	2844	3434	3500	4697	4697		328			-0.052050220021556015
FPEVFTTYISL	11	Unmodified	_FPEVFTTYISL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.8422790867501	2	658.842279	1315.67001	0.82956	0.00054655	-2.2423	-0.0014773	-1.4128	-0.00093078	658.841037378918	35.603	0.14466	35.603	35.554	35.699	0	1113	52	0.9515937	0.031155229	0.9515937	385.14124	0	12.609558						235	7	4	NaN	NaN	NaN	0.076968	1	19044	19044		42.995	18.433	1	32863			5930	6112	3435	3501	4698	4698					0.024797037889584317
FPEVFTTYISL	11	Unmodified	_FPEVFTTYISL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.8422790867501	2	658.842279	1315.67001	0.6891	0.00045401	-1.6019	-0.0010554	-0.91277	-0.00060137	658.8410391212124	35.601	0.16883	35.602	35.553	35.722	0.00053024	1110	58	0.95342636	0.0348168	0.9519069	385.88297	0	14.091522						241	8	4	NaN	NaN	NaN	0.01289	1	18203	18203		66.481	44.71	1	31552			5931	6112	3435	3501	4699	4699					0.024797037889584317
FPEVPEVVV	9	Unmodified	_FPEVPEVVV_					0	0	0		nc|ENSG00000055208|Q9NYJ8-2|TAB2;ENSG00000055208|ENST00000637181|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5506246303001	1	1014.55062	1013.54335	1.5126	0.0015346	-0.4148	-0.00042083	1.0978	0.0011138	1014.5501233815953	30.172	0.12067	30.166	30.142	30.263	-0.0064106	246	73	1.4731345	0.042619705	1.4716152	299.03864	0	8.65155						130	6	2	NaN	NaN	NaN	0.18779	1	8955	8955		26.115	11.69	1	8443.3			5932	602	3436	3502	4700	4700					0.03711822354478045
FPEVYVPTVF	10	Unmodified	_FPEVYVPTVF_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;RHOA|p.E40Q|3|0.18|ENSG00000067560|chr3:49375472-49375472|C/G|missense_variant;ENST00000478447.1_1_1:113246211-113247744:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.3131575065499	2	599.313158	1196.61176	0.76677	0.00045954	-5.6083	-0.0033611	-4.8415	-0.0029016	599.809460252324	34.419	0.26509	34.419	34.274	34.539	-0.00064468	1191	67	0.90387505	0.04041654	0.9023556	366.20596	0	16.374817						239	12	3	NaN	NaN	NaN	0.33935	1	15718	15718		26.115	16.503	1	23965			5933	720	3437	3503	4701	4701					0.021320669343140253
FPEYTHQLF	9	Unmodified	_FPEYTHQLF_					0	0	0		ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.28493138335	2	591.284931	1180.55531	1.4117	0.0008347	1.354	0.00080059	2.7657	0.0016353	591.7875155653725	24.55	0.2894	24.55	24.406	24.695	0	1173	100	0.91489893	0.060673952	0.91489893	370.72974	0	24.585938						561	13	3	NaN	NaN	NaN	0.16939	1	15840	15840		27.296	15.248	1	98473			5934	2578	3438	3504	4702	4702					-0.02774560902344092
FPFADQLLMTW	11	Unmodified	_FPFADQLLMTW_					0	0	0			REV__ENST00000369889.5_1_10:104536125-104536170:+|nuORF	REV__ENST00000369889.5_1_10:104536125-104536170:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.83647381485	2	684.836474	1367.65839	2.3248	0.0015921	5.4137	0.0037075	7.7385	0.0052996	684.8390050957819	23.537	0.072306	23.524	23.5	23.572	-0.01305	1110	46	0.95342636	0.027478099	0.9519069	385.73044	0	11.116882						66	4	2	NaN	NaN	NaN	0.76654	1	18847	18847		2.5994	0.26131	1	5898	+		5935	11881	3439	3505	4703	4703					-0.010728165060527317
FPFAVANQL	9	Unmodified	_FPFAVANQL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.77145986734996	2	503.77146	1005.52837	1.7658	0.00088957	-1.1817	-0.00059529	0.58415	0.00029428	503.77055797629083	29.739	0.21722	29.739	29.667	29.884	0	1284	61	0.8468043	0.036893547	0.8468043	343.82584	0	14.979797						326	10	4	NaN	NaN	NaN	0.22308	1	8804	8804		23.85	6.0701	1	65825			5936	984	3440	3506	4704	4704					0.025823752771316322
FPFAVANQL	9	Unmodified	_FPFAVANQL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5356432681	1	1006.53564	1005.52837	1.823	0.0018349	-1.1428	-0.0011502	0.68021	0.00068465	1006.534746890282	29.739	0.14479	29.739	29.691	29.836	0	204	79	1.4979934	0.0461272	1.4979934	304.1174	0	9.3645935						230	7	2	NaN	NaN	NaN	0.03623	1	8805	8805		52.758	24.898	1	48273			5937	984	3440	3506	4705	4705					0.025823752771316322
FPFAVANQL	9	Unmodified	_FPFAVANQL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5356432681	1	1006.53564	1005.52837	1.3233	0.001332	-2.5118	-0.0025283	-1.1885	-0.0011963	1006.533971528682	29.762	0.19304	29.755	29.635	29.828	-0.0070667	204	82	1.4979934	0.04791403	1.496474	304.1174	0	9.727356						304	9	2	NaN	NaN	NaN	0.02781	1	8636	8636		61.977	34.116	1	56394			5938	984	3440	3506	4706	4706					0.025823752771316322
FPFDTRQMLF	10	Unmodified	_FPFDTRQMLF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3209909261501	2	651.320991	1300.62743	1.9369	0.0012616	-5.8564	-0.0038144	-3.9195	-0.0025528	651.3171496584749	22.887	0.28909	22.887	22.838	23.128	0	1134	52	0.9387595	0.031178772	0.9387595	379.9925	0	12.620605						275	13	4	NaN	NaN	NaN	0.25724	1	18790	18790		30.61	1.0635	1	71507			5939	3818	3441	3507	4707	4707					-0.010859698202693835
FPFDVAVKF	9	Unmodified	_FPFDVAVKF_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2894854450001	2	535.289485	1068.56442	2.3493	0.0012576	-3.0935	-0.0016559	-0.74417	-0.00039835	535.2876643604859	29.908	0.36205	29.908	29.763	30.125	0	1275	76	0.85233563	0.046079576	0.85233563	345.796	0	18.694672						813	16	4	NaN	NaN	NaN	0.040769	1	11501	11501		50.831	23.042	1	177200			5940	4628	3442	3508	4708	4708					0.032878324539979076
FPFDVAVKF	9	Unmodified	_FPFDVAVKF_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2894854450001	2	535.289485	1068.56442	1.0098	0.00054055	-1.987	-0.0010636	-0.97715	-0.00052306	535.2884310247334	29.931	0.38607	29.925	29.732	30.118	-0.0064087	1275	64	0.85233563	0.038702607	0.8508162	345.796	0	15.701813						518	17	2	NaN	NaN	NaN	0.03533	1	11221	11221		53.14	23.542	1	166690			5941	4628	3442	3508	4709	4709					0.032878324539979076
FPFERLYDL	9	Unmodified	_FPFERLYDL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3084064796501	2	600.308406	1198.60226	1.3	0.00078042	-0.8806	-0.00052863	0.41943	0.00025179	600.809895754247	29.28	0.19303	29.28	29.232	29.425	0	1167	82	0.91857195	0.049594104	0.91857195	372.15335	0	20.092743						381	9	3	NaN	NaN	NaN	0.045904	1	16423	16423		48.65	11.348	1	105250			5942	3460	3443	3509	4710	4710					0.010902986488190436
FPFERLYDL	9	Unmodified	_FPFERLYDL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.3084064796501	2	600.308406	1198.60226	0.91819	0.0005512	-2.5312	-0.0015195	-1.6131	-0.00096833	600.3072935418106	29.304	0.24128	29.296	29.224	29.465	-0.0077229	1167	79	0.91857195	0.047744393	0.9170525	372.15338	0	19.343323						421	11	3	NaN	NaN	NaN	0.21451	1	15777	15777		24.4	7.8161	1	112630			5943	3460	3443	3509	4711	4711					0.010902986488190436
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5294952576999	1	1062.5295	1061.52222	1.5991	0.0016991	0.024407	2.5933E-05	1.6235	0.001725	1062.5295823615834	36.928	0.26461	36.928	36.808	37.072	0	126	58	1.544062	0.033617258	1.544062	313.24634	0	6.819977						229	12	2	NaN	NaN	NaN	0.01663	1	11178	11178		76.264	34.804	1	24890			5944	5877	3444	3510	4712	4712					-0.006081429543883132
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5294952576999	1	1062.5295	1061.52222	1.2073	0.0012828	-0.32512	-0.00034545	0.88215	0.00093731	1063.5320912323177	36.926	0.2163	36.928	36.808	37.024	0.0022469	120	61	1.5476005	0.03538847	1.5460811	313.96417	0	7.179352						242	10	3	NaN	NaN	NaN	0.032417	1	10926	10926		55.947	17.029	1	19496			5945	5877	3444	3510	4713	4713					-0.006081429543883132
FPFHEDYPNFM	11	Unmodified	_FPFHEDYPNFM_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3055378272	2	722.305538	1442.59652	1.375	0.00099319	-3.4685	-0.0025053	-2.0935	-0.0015121	722.3023152687095	27.712	0.072372	27.712	27.639	27.712	0	1047	31	0.99186665	0.018286169	0.99186665	401.07373	0	7.394226						58	4	2	NaN	NaN	NaN	0.7072	1	20334	20334		6.9844	1.2902	1	3920.3			5946	854	3445	3511	4714	4714					-0.10707167925170324
FPFHESIL	8	Unmodified	_FPFHESIL_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2581853166001	2	495.258185	988.501818	2.1259	0.0010529	-3.5843	-0.0017752	-1.4584	-0.00072228	495.2560546983301	25.612	0.28949	25.612	25.467	25.757	0	1296	70	0.8394264	0.042448223	0.8394264	340.90945	0	17.239166						301	13	3	NaN	NaN	NaN	0.40747	1	8162	8162		36.036	7.3698	1	45082			5947	7935	3446	3512	4715	4715					0.007106863858211909
FPFHESIL	8	Unmodified	_FPFHESIL_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.2581853166001	2	495.258185	988.501818	1.5945	0.00078967	-2.0138	-0.00099733	-0.41931	-0.00020767	495.25720131693726	25.66	0.24125	25.648	25.528	25.769	-0.011602	1296	73	0.8394264	0.044296205	0.83790696	340.90945	0	17.989655						329	11	3	NaN	NaN	NaN	0.35933	1	7996	7996		38.608	7.8168	1	49917			5948	7935	3446	3512	4716	4716					0.007106863858211909
FPFHFVDRL	9	Unmodified	_FPFHFVDRL_					0	0	0		SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF	SIK3-MRPS9|1|fusion	SIK3-MRPS9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.2099478352667	3	393.209948	1176.60801	1.8004	0.00070794	-3.1472	-0.0012375	-1.3468	-0.00052959	393.20891077143574	25.901	0.14477	25.901	25.829	25.974	0	1428	73	0.7580582	0.04446447	0.7580582	460.77682	0	27.027222						237	7	4	NaN	NaN	NaN	0.059222	1	15708	15708		32.377	15.519	1	34156			5949	2982	3447	3513	4717	4717					0.026774419511411907
FPFHFVDRL	9	Unmodified	_FPFHFVDRL_					0	0	0		SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF	SIK3-MRPS9|1|fusion	SIK3-MRPS9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3112835196001	2	589.311284	1176.60801	2.0962	0.0012353	1.8174	0.001071	3.9136	0.0023063	589.814292118877	25.926	0.16891	25.926	25.853	26.022	0	1161	76	0.9222442	0.04592049	0.9222442	373.7206	0	18.608337						260	8	4	NaN	NaN	NaN	0.017558	1	15709	15709		75.089	48.357	1	38123			5950	2982	3447	3513	4718	4718					0.026774419511411907
FPFHFVDRL	9	Unmodified						0	0	0		SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF	SIK3-MRPS9|1|fusion	SIK3-MRPS9|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.311284	1176.60801	1.796	0.0010584	4.4564	0.0026262	6.2524	0.0036846	589.8165822912749	26.094	0.16896	26.083	26.011	26.18	-0.011137	1158	88	0.92408	0.053261995	0.9225606	374.46454		21.583344	0.078797	0.0014493	0.00015819	NaN	75.089	256	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41725			5951	2982	3447	3513							0.026774419511411907
FPFHSAPAL	9	Unmodified	_FPFHSAPAL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.75835249209996	2	493.758352	985.502152	2.3782	0.0011743	-2.1977	-0.0010851	0.18053	8.9136E-05	493.75735959435474	23.152	0.33742	23.152	23.031	23.369	0	1329	82	0.81912065	0.04984671	0.81912065	332.67676	0	20.24469						795	15	4	NaN	NaN	NaN	0.0088919	1	8062	8062		94.648	52.863	1	192350			5952	1095	3448	3514	4719	4719					0.008821061056551116
FPFHSAPAL	9	Unmodified	_FPFHSAPAL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.75835249209996	2	493.758352	985.502152	1.5822	0.0007812	-1.5138	-0.00074743	0.068391	3.3769E-05	493.7576235106458	23.199	0.38602	23.186	23.09	23.476	-0.013294	1329	76	0.81912065	0.04615438	0.8176012	332.67676	0	18.745087						681	17	3	NaN	NaN	NaN	0.013314	1	7890	7890		82.858	38.556	1	193510			5953	1095	3448	3514	4720	4720					0.008821061056551116
FPFNMQELVL	10	Unmodified	_FPFNMQELVL_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3179169209501	2	619.317917	1236.62128	1.0273	0.0006362	-0.86795	-0.00053754	0.15931	9.8662E-05	619.3176364711709	36.421	0.28912	36.422	36.302	36.591	0.0016747	1131	49	0.94059354	0.029346347	0.93907416	380.9419	0	11.885284						312	13	4	NaN	NaN	NaN	0.14619	1	16718	16718		40.154	10.118	1	32080			5954	3862	3449	3515	4721	4721					0.012435119482006485
FPFNMQELVL	10	Unmodified						0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.317917	1236.62128	1.0656	0.00065996	-1.9716	-0.001221	-0.90595	-0.00056107	619.3171143650319	36.398	0.14461	36.398	36.278	36.422	0	1134	49	0.9387595	0.029346347	0.9387595	380.19913		11.885284	-0.011977	-0.00074932	-0.0001573	NaN	40.154	228	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27352			5955	3862	3449	3515							0.012435119482006485
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4825450651001	1	996.482545	995.475269	1.6243	0.0016186	-0.85116	-0.00084816	0.77313	0.00077041	996.481714650001	35.554	0.28946	35.554	35.482	35.771	0	246	127	1.4731345	0.07469547	1.4731345	299.11148	0	15.166473						831	13	4	NaN	NaN	NaN	0.063835	1	8406	8406		74.332	18.385	1	226250			5956	4334	3450	3516	4722	4722					-0.02265002505521352
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4825450651001	1	996.482545	995.475269	2.399	0.0023905	-2.2703	-0.0022623	0.12869	0.00012824	996.4804338186208	36.517	0.048248	36.519	36.494	36.543	0.0016785	243	43	1.4749115	0.02487731	1.473392	299.47226	0	5.051178						50	3	2	NaN	NaN	NaN	0.3434	1	8236	8236		39.459	7.8977	1	3215.6			5957	4334	3450	3516	4723	4723					-0.02265002505521352
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4825450651001	1	996.482545	995.475269	2.6495	0.0026401	-1.2453	-0.001241	1.4041	0.0013992	996.4822351867149	36.734	0.048096	36.735	36.711	36.759	0.0016785	240	46	1.4766881	0.026658535	1.4751687	299.833	0	5.412842						42	3	2	NaN	NaN	NaN	0.5868	1	8237	8237		26.115	1.1539	1	2230.3			5958	4334	3450	3516	4724	4724					-0.02265002505521352
FPFNPLDF	8	Unmodified	_FPFNPLDF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4825450651001	1	996.482545	995.475269	1.2656	0.0012611	0.23935	0.00023851	1.5049	0.0014997	996.4829216540127	35.553	0.26531	35.553	35.481	35.746	0.00052643	243	124	1.4749115	0.07289767	1.473392	299.47226	0	14.801453						886	12	4	NaN	NaN	NaN	0.03528	1	8238	8238		104.71	34.111	1	236000			5959	4334	3450	3516	4725	4725					-0.02265002505521352
FPFNPLDFESF	11	Unmodified	_FPFNPLDFESF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.316428477	2	680.316428	1358.6183	0.78551	0.00053439	-4.7658	-0.0032423	-3.9803	-0.0027079	680.3145701771514	38.78	0.048058	38.78	38.732	38.78	0	1116	34	0.94976085	0.020163655	0.94976085	384.2731	0	8.158203						45	3	2	NaN	NaN	NaN	0.12578	1	19654	19654		37.231	16.718	1	3204.3			5960	4334	3451	3517	4726	4726					-0.046660399049642365
FPFNPLDFESF	11	Unmodified	_FPFNPLDFESF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.316428477	2	680.316428	1358.6183	1.2241	0.00083278	-1.497	-0.0010184	-0.27289	-0.00018565	680.3152421894163	38.372	0.50458	38.372	38.179	38.684	0	1116	97	0.94976085	0.058654666	0.94976085	384.2731	0	23.73169						1261	22	5	NaN	NaN	NaN	1.2561E-15	1	19656	19656		121.66	70.828	1	671760			5961	4334	3451	3517	4727	4727					-0.046660399049642365
FPFNPLDFESF	11	Unmodified	_FPFNPLDFESF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.316428477	2	680.316428	1358.6183	2.0751	0.0014117	-2.101	-0.0014294	-0.025942	-1.7649E-05	680.3151456136337	38.369	0.43274	38.373	38.205	38.638	0.0040245	1116	103	0.94976085	0.06230718	0.9482414	384.2731	0	25.209473						1273	19	6	NaN	NaN	NaN	2.5206E-11	1	18754	18754		108.71	78.676	1	624550			5962	4334	3451	3517	4728	4728					-0.046660399049642365
FPFNPLDFESF	11	Unmodified	_FPFNPLDFESF_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1359.6255804874	1	1359.62558	1358.6183	1.8192	0.0024734	0.86652	0.0011781	2.6857	0.0036515	1359.6265909852268	38.321	0.072113	38.325	38.301	38.373	0.0040245	351	565	1.4108255	0.33503485	1.409306	285.41202	0	67.77803						958	4	2	NaN	NaN	NaN	0.11462	1	18760	18760		38.269	24.806	1	72897			5963	4334	3451	3517	4729	4729					-0.046660399049642365
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5607953861	1	1006.5608	1005.55352	1.1589	0.0011665	-1.0661	-0.0010731	0.09281	9.3418E-05	1006.5594761234074	35.699	0.12054	35.699	35.627	35.747	0	198	58	1.5015416	0.03370297	1.5015416	304.83765	0	6.8422546						146	6	2	NaN	NaN	NaN	0.078597	1	8811	8811		38.918	5.2196	1	14377			5964	2537	3452	3518	4730	4730					0.0509643007970908
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5607953861	1	1006.5608	1005.55352	1.3556	0.0013645	-0.33972	-0.00034195	1.0159	0.0010225	1006.5606535505672	35.023	0.48244	35.023	34.855	35.337	0	198	103	1.5015416	0.060326695	1.5015416	304.83765	0	12.247314						754	21	2	NaN	NaN	NaN	0.002833	1	8812	8812		108.51	23.631	1	270290			5965	2537	3452	3518	4731	4731					0.0509643007970908
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.78403592635	2	503.784036	1005.55352	1.5023	0.00075682	-0.20932	-0.00010545	1.2929	0.00065137	503.783602930713	34.974	0.096462	34.974	34.901	34.998	-4.5776E-05	1323	37	0.8228144	0.022155285	0.82129496	334.08517	0	8.9956665						64	5	2	NaN	NaN	NaN	0.22308	1	8646	8646		23.85	8.6751	1	4380.6			5966	2537	3452	3518	4732	4732					0.0509643007970908
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5607953861	1	1006.5608	1005.55352	1.7196	0.0017309	-0.26817	-0.00026993	1.4515	0.001461	1006.5603855594808	35.022	0.53082	35.022	34.805	35.336	-4.5776E-05	195	103	1.5033154	0.060301065	1.501796	305.19775	0	12.242096						806	23	2	NaN	NaN	NaN	0.002833	1	8647	8647		108.51	23.631	1	277400			5967	2537	3452	3518	4733	4733					0.0509643007970908
FPFPVTVSL	9	Unmodified	_FPFPVTVSL_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5607953861	1	1006.5608	1005.55352	1.0087	0.0010153	0.76247	0.00076747	1.7712	0.0017828	1006.561004563593	35.698	0.14468	35.698	35.602	35.746	0.00053024	192	52	1.5050892	0.030152082	1.5035697	305.55783	0	6.1213684						175	7	3	NaN	NaN	NaN	0.011118	1	8648	8648		89.521	36.763	1	13652			5968	2537	3452	3518	4734	4734					0.0509643007970908
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5036744376999	1	1008.50367	1007.4964	1.8132	0.0018286	0.11354	0.00011451	1.9267	0.0019431	1008.5037080351229	32.756	0.45857	32.756	32.611	33.069	0	225	163	1.4855686	0.09593511	1.4855686	301.58698	0	19.475891						1278	20	4	NaN	NaN	NaN	0.030597	1	8878	8878		87.021	25.75	1	496690			5969	3461	3453	3519	4735	4735					-0.007050371966784041
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5036744376999	1	1008.50367	1007.4964	1.4566	0.001469	-1.4171	-0.0014291	0.039493	3.9829E-05	1008.5020879072983	33.937	0.096523	33.936	33.936	34.032	-0.0012474	225	40	1.4855686	0.023079515	1.4840492	301.58698	0	4.6853943						72	5	2	NaN	NaN	NaN	0.50906	1	8707	8707		30.61	1.7145	1	5245.8			5970	3461	3453	3519	4736	4736					-0.007050371966784041
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5036744376999	1	1008.50367	1007.4964	1.0127	0.0010213	-0.5461	-0.00055075	0.46655	0.00047052	1008.5030832912352	33.889	0.14482	33.887	33.743	33.887	-0.0012474	225	46	1.4855686	0.026633143	1.4840492	301.58698	0	5.4067993						138	7	2	NaN	NaN	NaN	0.023741	1	8709	8709		93.472	28.922	1	12176			5971	3461	3453	3519	4737	4737					-0.007050371966784041
FPFQDIEL	8	Unmodified	_FPFQDIEL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5036744376999	1	1008.50367	1007.4964	1.8219	0.0018374	-0.39833	-0.00040172	1.4236	0.0014357	1008.5031341116784	32.755	0.33781	32.752	32.631	32.969	-0.0031013	222	154	1.4873441	0.09060061	1.4858247	301.94742	0	18.392914						1288	15	5	NaN	NaN	NaN	0.030419	1	8710	8710		106.56	27.359	1	492220			5972	3461	3453	3519	4738	4738					-0.007050371966784041
FPFQWQHV	8	Unmodified	_FPFQWQHV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5312265922	1	1088.53123	1087.52395	1.2072	0.0013141	1.0619	0.0011559	2.2691	0.00247	1088.5330047323587	32.948	0.28935	32.945	32.849	33.138	-0.0024757	66	169	1.579413	0.0990566	1.5778936	320.31973	0	20.0896						501	13	2	NaN	NaN	NaN	0.66957	1	11969	11969		20.952	7.2154	1	235110			5973	5338;4727	3454	3520	4739	4739					-0.01631089145757869
FPFREELL	8	Unmodified	_FPFREELL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7845672426001	2	525.784567	1049.55458	1.6998	0.00089374	-3.3115	-0.0017411	-1.6116	-0.00084738	525.7837978122276	26.481	0.24136	26.481	26.384	26.625	0	1269	73	0.8560222	0.044233978	0.8560222	347.3717	0	17.950012						308	11	3	NaN	NaN	NaN	0.29743	1	10622	10622		42.318	16.203	1	43340			5974	5893	3455	3521	4740	4740					0.03178644448621526
FPFSDKLGEL	10	Unmodified	_FPFSDKLGEL_					0	0	0		CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8004142720501	2	576.800414	1151.58628	1.7063	0.00098419	-1.7931	-0.0010342	-0.08678	-5.0055E-05	576.7990425073874	27.543	0.2414	27.543	27.374	27.615	0	1203	73	0.8965218	0.044133663	0.8965218	363.3886	0	17.888763						480	11	3	NaN	NaN	NaN	0.064658	1	14864	14864		50.831	12.7	1	95970			5975	169	3456	3522	4741	4741					0.016545924119100164
FPFVDDNEV	9	Unmodified	_FPFVDDNEV_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.24547187185	2	541.245472	1080.47639	1.7084	0.00092467	-2.5504	-0.0013804	-0.84204	-0.00045575	541.2443498804582	28.339	0.21717	28.339	28.267	28.484	0	1278	49	0.85049206	0.029498875	0.85049206	344.99963	0	11.9661255						160	10	2	NaN	NaN	NaN	0.094712	1	11986	11986		36.586	20.17	1	19533			5976	2060	3457	3523	4742	4742					-0.06062832927295858
FPFVDDNEV	9	Unmodified	_FPFVDDNEV_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.4836672770998	1	1081.48367	1080.47639	1.6286	0.0017613	3.0094	0.0032546	4.6379	0.0050159	1081.4873869477503	28.339	0.33785	28.339	28.267	28.605	0	201	127	1.4997677	0.074418545	1.4997677	304.19174	0	15.093994						644	15	2	NaN	NaN	NaN	0.011206	1	11988	11988		89.256	46.938	1	87548			5977	2060	3457	3523	4743	4743					-0.06062832927295858
FPFVDDNEV	9	Unmodified	_FPFVDDNEV_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;NFE2L2|p.I202Yfs*2|1|0.31|ENSG00000116044|chr2:177231999-177232000|-/A|frameshift_variant	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.24547187185	2	541.245472	1080.47639	1.0662	0.0005771	0.25584	0.00013847	1.3221	0.00071557	541.2452803806351	28.339	0.1448	28.33	28.281	28.426	-0.0089779	1278	43	0.85049206	0.025811553	0.8489726	344.99963	0	10.470367						151	7	2	NaN	NaN	NaN	0.056143	1	11673	11673		44.302	17.006	1	23699			5978	2060	3457	3523	4744	4744					-0.06062832927295858
FPFWPAKAL	9	Unmodified	_FPFWPAKAL_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.8000203415501	2	538.80002	1075.58549	1.6104	0.00086768	-3.4615	-0.0018651	-1.8511	-0.0009974	538.7981268971997	29.425	0.21725	29.425	29.377	29.594	0	1278	82	0.85049206	0.049744427	0.85049206	345.0194	0	20.17984						380	10	4	NaN	NaN	NaN	0.030391	1	11805	11805		58.599	19.14	1	67127			5979	1296	3458	3524	4745	4745					0.050718425535023925
FPFWPAKAL	9	Unmodified	_FPFWPAKAL_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.8000203415501	2	538.80002	1075.58549	1.029	0.00055445	-1.3984	-0.00075348	-0.3694	-0.00019903	538.7994558339535	29.449	0.21715	29.442	29.393	29.61	-0.0070667	1275	94	0.85233563	0.05709541	0.8508162	345.76727	0	23.161926						334	10	3	NaN	NaN	NaN	0.043119	1	11493	11493		49.833	23.101	1	66604			5980	1296	3458	3524	4746	4746					0.050718425535023925
FPFYFHISM	9	Unmodified	_FPFYFHISM_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205;ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.78097030865	2	594.78097	1187.54739	0.57403	0.00034142	-0.029932	-1.7803E-05	0.5441	0.00032362	594.7809702525428	31.573	0.21725	31.573	31.452	31.67	0	1173	76	0.91489893	0.04594034	0.91489893	370.70453	0	18.61441						270	10	3	NaN	NaN	NaN	0.12945	1	16076	16076		31.561	18.558	1	29588			5981	1546	3459	3525	4747	4747					-0.03888411423463367
FPFYFHISM	9	Unmodified	_FPFYFHISM_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205;ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.78097030865	2	594.78097	1187.54739	0.24632	0.00014651	1.5757	0.00093722	1.8221	0.0010837	594.7822746387287	31.596	0.21721	31.592	31.471	31.688	-0.0044174	1173	58	0.91489893	0.034903347	0.9133795	370.7045	0	14.142334						208	10	2	NaN	NaN	NaN	0.10956	1	15465	15465		34.439	20.397	1	32057			5982	1546	3459	3525	4748	4748					-0.03888411423463367
FPFYYEIKM	9	Unmodified	_FPFYYEIKM_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3017355405	2	619.301736	1236.58892	1.5413	0.00095451	-1.6098	-0.00099697	-0.068554	-4.2455E-05	619.3007203378567	28.846	0.33787	28.846	28.75	29.087	0	1176	97	0.9130621	0.058730662	0.9130621	369.79172	0	23.78601						1025	15	4	NaN	NaN	NaN	0.011206	1	17438	17438		89.256	41.253	1	285770			5983	4622	3460	3526	4749	4749					-0.019912754548158773
FPFYYEIKM	9	Unmodified	_FPFYYEIKM_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3017355405	2	619.301736	1236.58892	0.61258	0.00037937	-3.099	-0.0019192	-2.4864	-0.0015398	619.8022346373107	29.642	0.14477	29.635	29.635	29.779	-0.0070648	1173	82	0.91489893	0.049562037	0.9133795	370.53564	0	20.072723						170	7	2	NaN	NaN	NaN	0.12104	1	16710	16710		32.778	9.6922	1	16057			5984	4622	3460	3526	4750	4750					-0.019912754548158773
FPFYYEIKM	9	Unmodified	_FPFYYEIKM_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3017355405	2	619.301736	1236.58892	1.0662	0.00066032	-1.5731	-0.00097423	-0.50688	-0.00031391	619.3009155493352	28.845	0.41025	28.837	28.716	29.127	-0.0083504	1176	94	0.9130621	0.056910694	0.91154265	369.79172	0	23.04895						1020	18	5	NaN	NaN	NaN	0.013696	1	16711	16711		81.699	43.569	1	268730			5985	4622	3460	3526	4751	4751					-0.019912754548158773
FPFYYEIKM	9	Unmodified						0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.301736	1236.58892	1.0417	0.00064511	1.6714	0.0010351	2.7131	0.0016802	619.8047136207516	29.498	0.096581	29.498	29.449	29.546	0	1170	82	0.91673553	0.049562037	0.91673553	371.27945		20.072693	-0.068426	0.0031732	0.001678	NaN	32.778	104	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11696			5986	4622	3460	3526							-0.019912754548158773
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(56)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.29919285155	2	627.299193	1252.58383	2.5589	0.0016052	-2.7148	-0.001703	-0.15589	-9.779E-05	627.2975334543	25.636	0.31363	25.636	25.539	25.853	0	1149	109	0.92958635	0.06605065	0.92958635	376.431	0	26.746857						1229	14	7	NaN	NaN	NaN	0.032689	1	17844	17844		55.592	28.295	1	612800			5987	4622	3460	3527	4752	4752		493			-0.03235579317424708
FPFYYEIKM	9	Oxidation (M)	_FPFYYEIKM(Oxidation (M))_		FPFYYEIKM(1)		FPFYYEIKM(100)	0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.29919285155	2	627.299193	1252.58383	2.4103	0.001512	-2.2475	-0.0014099	0.16278	0.00010211	627.2981578979931	25.66	0.24127	25.648	25.552	25.793	-0.011602	1152	145	0.92775106	0.08812463	0.9262317	375.6878	0	35.685608						1291	11	7	NaN	NaN	NaN	0.0042638	1	17079	17079		104.2	53.368	1	636850			5988	4622	3460	3527	4753	4753		493			-0.03235579317424708
FPFYYEIKM	9	Oxidation (M)						0	0	1		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.299193	1252.58383	1.8642	0.0011694	-0.72179	-0.00045278	1.1424	0.00071661	627.7983090080306	25.901	0.048296	25.89	25.841	25.89	-0.0116	1155	97	0.92591566	0.05869901	0.9243962	374.94455		23.769867	0.1268	0.0024033	-0.0025951	NaN	55.592	113	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14280			5989	4622	3460	3527				493			-0.03235579317424708
FPGAYGAGG	9	Unmodified	_FPGAYGAGG_					0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.3624299294002	1	796.36243	795.355153	1.8998	0.0015129	5.9769	0.0047598	7.8767	0.0062727	796.3674628279337	27.881	0.1448	27.881	27.833	27.977	0	528	76	1.3052634	0.044853806	1.3052634	265.93515	0	9.138519						165	7	2	NaN	NaN	NaN	0.26823	1	4689	4689		20.952	5.9396	1	15105			5990	14019	3461	3528	4754	4754					-0.050709907792793274
FPGAYGAGG	9	Unmodified						0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	796.36243	795.355153	1.2845	0.0010229	5.2101	0.0041492	6.4947	0.0051721	796.36577127524	27.88	0.16897	27.87	27.822	27.991	-0.009552	528	91	1.3052634	0.05384457	1.303744	265.93515		10.970337	-0.0051493	-0.00027154	-0.00075972	NaN	20.952	205	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19154			5991	14019	3461	3528							-0.050709907792793274
FPGCSLPT	8	Unmodified	_FPGCSLPT_					0	0	0		nc|ENSG00000205923|Q6PRD7|CEMP1	nc|ENSG00000205923|Q6PRD7|CEMP1	nc|ENSG00000205923|Q6PRD7|CEMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.3862018388999	1	821.386202	820.378925	1.4648	0.0012032	-0.020762	-1.7054E-05	1.4441	0.0011861	821.386002528474	31.187	0.38611	31.187	31.139	31.525	0	510	121	1.316029	0.07173169	1.316029	267.98972	0	14.607086						797	17	4	NaN	NaN	NaN	0.75682	1	5021	5021		15.013	0	1	172240			5992	8020	3462	3529	4755	4755					-0.038448933371455496
FPGEAERVAF	10	Unmodified	_FPGEAERVAF_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7825558699001	2	561.782556	1121.55056	1.2935	0.00072667	-4.9443	-0.0027776	-3.6508	-0.002051	561.779468921671	21.97	0.16863	21.956	21.812	21.98	-0.013895	1239	97	0.87444305	0.058902204	0.8729236	354.5517	0	23.882477						224	8	2	NaN	NaN	NaN	0.2504	1	13336	13336		31.198	8.0805	1	40790			5993	5556	3463	3530	4756	4756					-0.005354450451022785
FPGFFSPML	9	Unmodified	_FPGFFSPML_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5066513256	1	1042.50665	1041.49937	1.6163	0.001685	-0.36569	-0.00038124	1.2506	0.0013038	1042.5065807735912	36.35	0.31346	36.35	36.205	36.519	0	138	97	1.5369828	0.05666983	1.5369828	311.88705	0	11.499512						622	14	3	NaN	NaN	NaN	0.049695	1	10264	10264		47.04	19.179	1	79094			5994	4794	3464	3531	4757	4757					-0.01971485343506174
FPGFFSPML	9	Unmodified	_FPGFFSPML_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5066513256	1	1042.50665	1041.49937	1.631	0.0017003	0.51921	0.00054128	2.1502	0.0022416	1042.5078146265562	36.324	0.31317	36.325	36.205	36.518	0.0011024	135	100	1.5387528	0.058437586	1.5372335	312.24625	0	11.858246						502	14	3	NaN	NaN	NaN	0.014943	1	10059	10059		78.398	43.101	1	62828			5995	4794	3464	3531	4758	4758					-0.01971485343506174
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(78)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5015659476999	1	1058.50157	1057.49429	1.5367	0.0016266	0.33008	0.00034939	1.8667	0.0019759	1058.5016065876912	33.214	0.43439	33.214	33.021	33.456	0	150	103	1.5299006	0.06020522	1.5299006	310.38855	0	12.214539						979	19	3	NaN	NaN	NaN	0.014943	1	10977	10977		78.398	45.945	1	137450			5996	4794	3464	3532	4759	4759		507			-0.032157892061377424
FPGFFSPML	9	Oxidation (M)	_FPGFFSPM(Oxidation (M))L_		FPGFFSPM(1)L		FPGFFSPM(90)L	0	0	1		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5015659476999	1	1058.50157	1057.49429	1.2769	0.0013516	0.63015	0.00066702	1.9071	0.0020186	1058.502147480313	33.213	0.31363	33.21	33.09	33.403	-0.0024757	150	112	1.5299006	0.06551397	1.5283811	310.38855	0	13.291595						789	14	3	NaN	NaN	NaN	0.011118	1	10753	10753		89.521	53.485	1	121630			5997	4794	3464	3532	4760	4760		507			-0.032157892061377424
FPGGKEYLM	9	Unmodified	_FPGGKEYLM_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000129354|ENST00000250244|AP1M2;ENSG00000072958|ENST00000291439|AP1M1	ENSG00000129354|ENST00000250244|AP1M2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.25732803685	2	521.257328	1040.5001	1.6648	0.00086777	2.552	0.0013303	4.2168	0.002198	521.7619602517502	21.826	0.096302	21.826	21.73	21.826	0	1266	58	0.85786515	0.03502804	0.85786515	348.15878	0	14.215881						91	5	2	NaN	NaN	NaN	0.40649	1	10231	10231		13.463	6.5998	1	12082			5998	2602;804	3465	3533	4761	4761					-0.018526906944543953
FPGGKEYLM	9	Unmodified						0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000129354|ENST00000250244|AP1M2;ENSG00000072958|ENST00000291439|AP1M1	ENSG00000129354|ENST00000250244|AP1M2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.257328	1040.5001	1.401	0.00073029	5.7458	0.0029951	7.1468	0.0037253	521.2599196167216	21.705	0.1685	21.691	21.643	21.812	-0.013897	1266	64	0.85786515	0.038719356	0.8563457	348.15875		15.713989	-0.067204	0.0015381	-0.00075972	NaN	13.463	162	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27866			5999	2602;804	3465	3533							-0.018526906944543953
FPGIDEAM	8	Oxidation (M)	_FPGIDEAM(Oxidation (M))_		FPGIDEAM(1)		FPGIDEAM(50)	0	0	1		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.3865957694001	1	895.386596	894.379319	1.8034	0.0016147	0.0047951	4.2935E-06	1.8082	0.001619	895.3867514740303	22.501	0.14458	22.501	22.453	22.597	0	393	64	1.3858368	0.037528872	1.3858368	281.82022	0	7.6317444						160	7	2	NaN	NaN	NaN	0.19946	1	5985	5985		50.033	26.182	1	12793			6000	5772	3466	3534	4762	4762		589			-0.07209518407921678
FPGIDEAM	8	Oxidation (M)	_FPGIDEAM(Oxidation (M))_		FPGIDEAM(1)		FPGIDEAM(66)	0	0	1		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.3865957694001	1	895.386596	894.379319	1.2972	0.0011615	0.55306	0.0004952	1.8503	0.0016567	895.3865436601002	22.524	0.12057	22.511	22.438	22.559	-0.013733	405	70	1.3786905	0.041103005	1.377171	280.3669	0	8.358612						157	6	2	NaN	NaN	NaN	0.09307	1	5870	5870		65.672	29.636	1	12294			6001	5772	3466	3534	4763	4763		589			-0.07209518407921678
FPGIDEAM	8	Unmodified	_FPGIDEAM_					0	0	0		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.3916811473	1	879.391681	878.384405	1.8718	0.0016461	0.92326	0.00081191	2.7951	0.002458	879.3917364145451	26.191	0.072397	26.18	26.156	26.228	-0.011137	402	79	1.3804773	0.04647672	1.3789579	280.80774	0	9.45401						125	4	2	NaN	NaN	NaN	0.35933	1	5650	5650		38.608	12.856	1	9627.1			6002	5772	3466	3535	4764	4764					-0.05965214545312847
FPGIDSKI	8	Unmodified	_FPGIDSKI_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.74491076584997	2	438.744911	875.475269	1.8594	0.00081582	-1.9007	-0.00083392	-0.041238	-1.8093E-05	438.744018807111	19.106	0.072111	19.092	19.092	19.164	-0.014141	1422	31	0.7617651	0.018532872	0.7602457	309.91702	0	7.539917						54	4	2	NaN	NaN	NaN	0.82212	1	5607	5607		6.2502	0	1	3660.3			6003	3702	3467	3536	4765	4765					0.032549974944686255
FPGIEVTV	8	Unmodified	_FPGIEVTV_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	861.4716460278	1	861.471646	860.46437	2.3029	0.0019839	-1.1728	-0.0010104	1.1301	0.00097356	861.4705824192814	28.774	0.41031	28.774	28.677	29.087	0	408	178	1.3769034	0.10558462	1.3769034	280.1707	0	21.484222						1290	18	4	NaN	NaN	NaN	0.071487	1	5538	5538		71.993	16.045	1	485380			6004	1501	3468	3537	4766	4766					0.02855595120183807
FPGIEVTV	8	Unmodified	_FPGIEVTV_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.4716460278	1	861.471646	860.46437	1.6754	0.0014433	-0.63457	-0.00054666	1.0409	0.00089667	861.4709620875129	28.773	0.2896	28.765	28.668	28.958	-0.0083504	408	163	1.3769034	0.0966419	1.375384	280.1707	0	19.66455						1298	13	4	NaN	NaN	NaN	0.032886	1	5402	5402		100.37	37.062	1	508740			6005	1501	3468	3537	4767	4767					0.02855595120183807
FPGPDPGF	8	Unmodified	_FPGPDPGF_					0	0	0		ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.3828310205001	1	833.382831	832.375555	2.1483	0.0017903	3.591	0.0029926	5.7392	0.004783	833.3857180144771	25.564	0.12058	25.564	25.515	25.636	0	453	52	1.3500742	0.030435681	1.3500742	274.85724	0	6.1962585						123	6	2	NaN	NaN	NaN	0.30832	1	5165	5165		41.46	8.3231	1	9641.7			6006	4222	3469	3538	4768	4768					-0.047338201194634166
FPGPDPGF	8	Unmodified	_FPGPDPGF_					0	0	0		ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.3828310205001	1	833.382831	832.375555	2.2039	0.0018367	0.064483	5.3739E-05	2.2684	0.0018905	833.3831135413384	25.66	0.0965	25.648	25.648	25.745	-0.011602	444	43	1.3554435	0.025057912	1.353924	275.95038	0	5.101471						89	5	2	NaN	NaN	NaN	0.54545	1	5050	5050		28.667	14.929	1	5470.5			6007	4222	3469	3538	4769	4769					-0.047338201194634166
FPGPDPGF	8	Unmodified	_FPGPDPGF_					0	0	0		ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.3828310205001	1	833.382831	832.375555	2.314	0.0019284	2.5644	0.0021371	4.8784	0.0040655	833.3855081185427	25.588	0.048265	25.576	25.552	25.6	-0.0116	450	43	1.3518641	0.025057912	1.3503447	275.22165	0	5.101471						54	3	2	NaN	NaN	NaN	0.35353	1	5051	5051		38.918	15.067	1	4206.8			6008	4222	3469	3538	4770	4770					-0.047338201194634166
FPGPFEEEM	9	Unmodified	_FPGPFEEEM_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1;ENST00000523744.2_2_8:17924585-17924894:-|nuORF	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.4499243076998	1	1082.44992	1081.44265	1.7009	0.0018412	3.766	0.0040765	5.467	0.0059177	1082.4534650124524	28.05	0.2413	28.05	27.929	28.17	0	171	85	1.5174994	0.049622893	1.5174994	307.78476	0	10.064667						467	11	4	NaN	NaN	NaN	0.14301	1	12034	12034		29.598	2.3021	1	45624			6009	1491	3470	3539	4771	4771					-0.09481577690712584
FPGPFEEEM	9	Unmodified	_FPGPFEEEM_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1;ENST00000523744.2_2_8:17924585-17924894:-|nuORF	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.4499243076998	1	1082.44992	1081.44265	1.3375	0.0014478	4.635	0.0050171	5.9724	0.0064649	1082.4552765106123	28.073	0.24137	28.064	27.968	28.209	-0.0089779	165	79	1.5210435	0.046073437	1.5195241	308.50357	0	9.344788						434	11	3	NaN	NaN	NaN	0.062072	1	11714	11714		41.785	9.0065	1	45342			6010	1491	3470	3539	4772	4772					-0.09481577690712584
FPGPYAVL	8	Unmodified	_FPGPYAVL_					0	0	0		ENSG00000136630|ENST00000366903|HLX	ENSG00000136630|ENST00000366903|HLX	ENSG00000136630|ENST00000366903|HLX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.4661667194001	1	863.466167	862.45889	1.5758	0.0013606	0.20067	0.00017327	1.7765	0.0015339	863.4665985966697	29.401	0.24137	29.401	29.28	29.522	0	387	46	1.389409	0.026786327	1.389409	282.70502	0	5.4502563						152	11	2	NaN	NaN	NaN	0.71635	1	5562	5562		18.034	5.7748	1	10439			6011	3028	3471	3540	4773	4773					0.022159163283845373
FPGQLNADL	9	Unmodified	_FPGQLNADL_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;CON__ENSEMBL:ENSBTAP00000025008;ENST00000405796.1_1_6:90012140-90012332:+|nuORF;ENST00000405234.1_1_6:39967351-39967723:+|nuORF;ENST00000478631.6_2_1:53460811-53461279:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4941723839	1	974.494172	973.486896	2.2314	0.0021745	-0.59607	-0.00058087	1.6354	0.0015936	974.493697609078	25.564	0.072344	25.564	25.564	25.636	0	210	58	1.4944444	0.033728123	1.4944444	303.53192	0	6.850403						92	4	2	NaN	NaN	NaN	0.35794	1	7699	7699		15.463	1.4211	1	7661.3			6012	5542;1496;3078;6137;5007	3472	3541	4774	4774					-0.0009080548219344564
FPGQVDPM	8	Unmodified	_FPGQVDPM_					0	0	0		ENST00000354323.2_1_9:35906663-35906753:+|nuORF	ENST00000354323.2_1_9:35906663-35906753:+|nuORF	ENST00000354323.2_1_9:35906663-35906753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4076655625	1	890.407666	889.400389	1.5609	0.0013899	0.94899	0.00084499	2.5099	0.0022349	890.4085063032096	27.133	0.28956	27.133	26.964	27.253	0	414	67	1.3733286	0.039334774	1.3733286	279.30023	0	7.999695						247	13	2	NaN	NaN	NaN	0.57691	1	5925	5925		26.732	4.6052	1	25217			6013	6562	3473	3542	4775	4775					-0.04873508308412511
FPGRSYFDF	9	Unmodified	_FPGRSYFDF_					0	0	0		ENST00000555933.1_1_14:51449651-51452878:-|nuORF;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	ENST00000555933.1_1_14:51449651-51452878:-|nuORF	ENST00000555933.1_1_14:51449651-51452878:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1135.5207214854	1	1135.52072	1134.51345	0.62661	0.00071153	-9.0496	-0.010276	-8.423	-0.0095645	1135.5102090788168	31.934	0.096519	31.93	31.882	31.979	-0.0037613	84	79	1.5688156	0.045936942	1.5672961	318.0053	0	9.311615						151	5	2	NaN	NaN	NaN	0.66196	1	13788	13788		2.4615	0	1	15385			6014	1255	3474	3543	4776	4776					-0.048431165908596086
FPGTYTITI	9	Unmodified	_FPGTYTITI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.77112551634997	2	506.771126	1011.5277	1.9065	0.00096618	-9.2626	-0.004694	-7.3561	-0.0037279	506.76644606002674	23.73	0.072227	23.717	23.693	23.765	-0.013048	1326	37	0.8209676	0.022172093	0.81944823	333.3088	0	9.00177						42	4	2	NaN	NaN	NaN	0.45297	1	8870	8870		11.548	0	1	4963.3			6015	2575	3475	3544	4777	4777					0.02239535837418316
FPGYPLPAL	9	Unmodified	_FPGYPLPAL_					0	0	0		ENSG00000180035|ENST00000613509|ZNF48	ENSG00000180035|ENST00000613509|ZNF48	ENSG00000180035|ENST00000613509|ZNF48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5345806356	1	974.534581	973.527304	1.4351	0.0013986	1.525	0.0014861	2.9601	0.0028847	974.5367003144488	32.201	0.26542	32.201	32.056	32.321	0	228	73	1.4837929	0.042624116	1.4837929	301.36832	0	8.657257						210	12	2	NaN	NaN	NaN	0.055365	1	7707	7707		44.632	16.772	1	15719			6016	5180	3476	3545	4778	4778					0.03948160908225873
FPHANIWDIL	10	Unmodified	_FPHANIWDIL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3218482059001	2	613.321848	1224.62914	0.69355	0.00042537	-3.3111	-0.0020308	-2.6175	-0.0016054	613.3198477844261	31.983	0.24136	31.983	31.887	32.128	0	1164	88	0.9204082	0.05324477	0.9204082	372.8071	0	21.566528						385	11	3	NaN	NaN	NaN	0.37681	1	17095	17095		24.562	4.0487	1	60078			6017	1385	3477	3546	4779	4779					0.025814072600041982
FPHANIWDIL	10	Unmodified	_FPHANIWDIL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3218482059001	2	613.321848	1224.62914	0.31444	0.00019285	-3.7759	-0.0023158	-3.4614	-0.002123	613.3199342597981	32.055	0.33782	32.051	31.93	32.268	-0.0037613	1161	70	0.9222442	0.04222405	0.92072475	373.55078	0	17.102661						430	15	3	NaN	NaN	NaN	0.25724	1	16411	16411		30.61	7.2757	1	64120			6018	1385	3477	3546	4780	4780					0.025814072600041982
FPHASNITL	9	Unmodified	_FPHASNITL_					0	0	0		nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.26654166495	2	500.266542	998.51853	1.4739	0.00073736	-3.5166	-0.0017592	-2.0426	-0.0010219	500.26473173811667	21.296	0.12031	21.296	21.272	21.392	0	1308	55	0.83204526	0.033225775	0.83204526	337.8653	0	13.491852						149	6	2	NaN	NaN	NaN	0.11656	1	8526	8526		33.425	8.8633	1	18576			6019	3048	3478	3547	4781	4781					0.01921187271761937
FPHASNITL	9	Unmodified						0	0	0		nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.266542	998.51853	1.1333	0.00056695	-3.9049	-0.0019535	-2.7716	-0.0013865	500.2645861976789	21.344	0.19236	21.33	21.21	21.402	-0.014006	1311	67	0.83019954	0.04061365	0.8286801	337.11578		16.491821	0.017125	-0.00023848	-0.0016826	NaN	33.425	177	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18768			6020	3048	3478	3547							0.01921187271761937
FPHDNVEDL	9	Unmodified	_FPHDNVEDL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.24854587705	2	543.248546	1084.48254	1.7356	0.00094289	-1.846	-0.0010029	-0.11038	-5.9963E-05	543.2478249036138	19.732	0.21617	19.732	19.636	19.852	0	1293	64	0.84127116	0.038719356	0.84127116	341.24335	0	15.705688						258	10	3	NaN	NaN	NaN	0.56377	1	12151	12151		6.9844	0.12115	1	25790			6021	5095	3479	3548	4782	4782					-0.05632314695776586
FPHDNVEDL	9	Unmodified						0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.248546	1084.48254	1.4871	0.00080784	-1.2743	-0.00069225	0.21278	0.00011559	543.2479286307799	19.707	0.21656	19.693	19.645	19.861	-0.014141	1293	64	0.84127116	0.038723588	0.8397517	341.24335		15.707367	-0.019593	0.00029605	-0.00075972	NaN	6.9844	253	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26737			6022	5095	3479	3548							-0.05632314695776586
FPHDNVEDLI	10	Unmodified	_FPHDNVEDLI_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.79057786725	2	599.790578	1197.5666	1.269	0.00076112	-7.2099	-0.0043244	-5.9409	-0.0035633	599.786741945275	24.984	0.2895	24.972	24.827	25.117	-0.012392	1191	106	0.90387505	0.06430954	0.9023556	366.20264	0	26.05484						600	13	4	NaN	NaN	NaN	0.12158	1	15741	15741		42.995	15.206	1	124650			6023	5095	3480	3549	4783	4783					-0.024277835988641527
FPHELEVPAL	10	Unmodified	_FPHELEVPAL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.3084064796501	2	576.308406	1150.60226	1.8175	0.0010475	-0.76614	-0.00044154	1.0514	0.00060592	576.3082858912608	26.65	0.21772	26.65	26.577	26.795	0	1188	82	0.90571284	0.04962623	0.90571284	367.11774	0	20.115295						405	10	3	NaN	NaN	NaN	0.26902	1	14839	14839		29.598	6.2639	1	91030			6024	2427	3481	3550	4784	4784					0.032982986488150345
FPHELEVPAL	10	Unmodified	_FPHELEVPAL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.3084064796501	2	576.308406	1150.60226	1.1899	0.00068574	-0.17566	-0.00010123	1.0142	0.0005845	576.3084017837676	26.673	0.28956	26.663	26.542	26.832	-0.010643	1188	88	0.90571284	0.053302348	0.9041934	367.11774	0	21.605347						522	13	4	NaN	NaN	NaN	0.071906	1	14335	14335		49.833	29.384	1	98065			6025	2427	3481	3550	4785	4785					0.032982986488150345
FPHGDLTEF	9	Unmodified	_FPHGDLTEF_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7481817363	2	531.748182	1061.48181	2.1842	0.0011614	-6.0711	-0.0032283	-3.887	-0.0020669	532.245700187979	22.983	0.19256	22.983	22.911	23.103	0	1278	76	0.85049206	0.04610449	0.85049206	345.07736	0	18.70636						258	9	3	NaN	NaN	NaN	0.12945	1	11165	11165		31.561	11.006	1	38719			6026	391	3482	3551	4786	4786					-0.046471093448190004
FPHGGGFVL	9	Unmodified	_FPHGGGFVL_					0	0	0		ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;nc|ENSG00000156345|Q8IZL9-4|CDK20	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.74524511685007	2	465.745245	929.475937	0.76303	0.00035538	-0.94582	-0.00044051	-0.18279	-8.5135E-05	465.744935368726	23.995	0.36183	23.982	23.861	24.223	-0.013048	1362	64	0.79879075	0.038820088	0.7972713	324.689	0	15.779419						434	16	2	NaN	NaN	NaN	0.36886	1	6458	6458		15.013	7.4227	1	63975			6027	3914	3483	3552	4787	4787					0.008378369341926373
FPHGGGFVL	9	Unmodified						0	0	0		ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;nc|ENSG00000156345|Q8IZL9-4|CDK20	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	465.745245	929.475937	1.0737	0.00050008	-2.2727	-0.0010585	-1.1989	-0.0005584	465.7441762395224	23.971	0.16886	23.971	23.947	24.116	0	1365	70	0.7969414	0.042517245	0.7969414	323.9373		17.282227	-0.0054345	-0.00066318	-0.00016497	NaN	15.013	285	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44189			6028	3914	3483	3552							0.008378369341926373
FPHKFEISF	9	Unmodified	_FPHKFEISF_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.29784179335	2	576.297842	1150.58113	1.8337	0.0010568	-0.53879	-0.00031051	1.2949	0.00074627	576.7986961897302	23.73	0.19273	23.73	23.682	23.875	0	1218	76	0.8873258	0.045970082	0.8873258	359.6649	0	18.633331						288	9	4	NaN	NaN	NaN	0.084037	1	14836	14836		38.131	15.013	1	43636			6029	5734	3484	3553	4788	4788					0.011863333399332987
FPHLLQPVL	9	Unmodified	_FPHLLQPVL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.3185772354501	2	532.318577	1062.6226	2.2707	0.0012087	-1.9206	-0.0010224	0.35013	0.00018638	532.3174873181749	28.122	0.33781	28.122	28.001	28.339	0	1224	85	0.883646	0.051544964	0.883646	358.52426	0	20.913483						608	15	4	NaN	NaN	NaN	0.078597	1	11256	11256		38.918	8.3077	1	156640			6030	2404	3485	3554	4789	4789					0.0937951409928246
FPHLLQPVL	9	Unmodified	_FPHLLQPVL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.3185772354501	2	532.318577	1062.6226	0.8904	0.00047397	-0.5212	-0.00027744	0.3692	0.00019653	532.3181988401747	28.17	0.26548	28.161	28.04	28.305	-0.0089779	1224	85	0.883646	0.051544964	0.88212657	358.52423	0	20.913483						539	12	3	NaN	NaN	NaN	0.021781	1	10999	10999		69.745	29.591	1	158220			6031	2404	3485	3554	4790	4790					0.0937951409928246
FPHLTVVLL	9	Unmodified	_FPHLTVVLL_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.8209527489001	2	519.820953	1037.62735	0.86741	0.0004509	-2.5454	-0.0013231	-1.6779	-0.00087223	519.8194203962001	31.332	0.21716	31.332	31.211	31.428	0	1257	97	0.86339295	0.058934033	0.86339295	350.41486	0	23.918823						385	10	2	NaN	NaN	NaN	0.17818	1	10115	10115		26.732	6.1761	1	40815			6032	2901	3486	3555	4791	4791					0.11004398242039315
FPHLTVVLL	9	Unmodified	_FPHLTVVLL_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.8209527489001	2	519.820953	1037.62735	1.5976	0.00083044	-0.89065	-0.00046298	0.7069	0.00036746	519.8203217925794	30.873	0.33786	30.873	30.728	31.066	0	1254	100	0.8652351	0.060765862	0.8652351	351.1625	0	24.662323						1100	15	5	NaN	NaN	NaN	0.042649	1	10116	10116		50.033	8.5725	1	596510			6033	2901	3486	3555	4792	4792					0.11004398242039315
FPHLTVVLL	9	Unmodified	_FPHLTVVLL_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.8209527489001	2	519.820953	1037.62735	1.8268	0.00094961	-1.73	-0.00089929	0.096791	5.0314E-05	519.8200301859729	30.92	0.48267	30.915	30.722	31.205	-0.0050716	1251	124	0.8670771	0.07546437	0.8655577	351.9101	0	30.627838						1594	21	5	NaN	NaN	NaN	0.049695	1	9906	9906		47.04	5.5801	1	659920			6034	2901	3486	3555	4793	4793					0.11004398242039315
FPHLTVVLL	9	Unmodified						0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.820953	1037.62735	0.64701	0.00033633	-0.91852	-0.00047747	-0.27151	-0.00014114	519.8210026702619	31.476	0.21722	31.471	31.447	31.664	-0.0044155	1254	79	0.8652351	0.047873557	0.86371565	351.1625		19.42984	0.069668	0.00084219	0.00016137	NaN	26.732	296	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27234			6035	2901	3486	3555							0.11004398242039315
FPHPVPLPPQ	10	Unmodified	_FPHPVPLPPQ_					0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.81365903305	2	564.813659	1127.61277	1.5241	0.00086084	-1.7153	-0.00096882	-0.19118	-0.00010798	564.813243436282	30.56	0.072393	30.56	30.535	30.608	0	1194	100	0.902037	0.060628116	0.902037	365.71606	0	24.580688						188	4	3	NaN	NaN	NaN	0.47344	1	14005	14005		20.555	0.10679	1	14544	+		6036	11437	3487	3556	4794	4794					0.054063260938846724
FPHPVPLPPQ	10	Unmodified						0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.813659	1127.61277	1.5241	0.00086084	-1.7153	-0.00096882	-0.19118	-0.00010798	564.813243436282	30.56	0.072393	30.56	30.535	30.608	0	1194	100	0.902037	0.060628116	0.902037	365.71606		24.580688	0.003385	-0.0015812	-0.0029157	NaN	20.555	188	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14544	+		6037	11437	3487	3556							0.054063260938846724
FPHPVPLPPQ	10	Unmodified						0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.813659	1127.61277	1.0281	0.00058068	0.66286	0.00037439	1.691	0.00095507	564.8142763202633	30.559	0.096493	30.553	30.529	30.625	-0.0057564	1182	82	0.9093879	0.04958874	0.90786844	368.69635		20.10495	-0.003385	0.0011053	0.0029157	NaN	20.555	137	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11882	+		6038	11437	3487	3556							0.054063260938846724
FPHSMEPQL	9	Unmodified	_FPHSMEPQL_					0	0	0		ENST00000515049.1_1_17:48016676-48017012:+|nuORF;ENSG00000053372|ENST00000330263|MRTO4	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2578593531001	2	543.257859	1084.50117	1.3206	0.00071743	-0.82445	-0.00044789	0.49616	0.00026954	543.2574628459803	21.079	0.14452	21.079	21.055	21.2	0	1287	46	0.8449601	0.027662694	0.8449601	342.7396	0	11.220764						177	7	4	NaN	NaN	NaN	0.074859	1	12155	12155		39.459	14.897	1	27085			6039	583	3488	3557	4795	4795					-0.03770476325553318
FPHSMEPQL	9	Unmodified						0	0	0		ENST00000515049.1_1_17:48016676-48017012:+|nuORF;ENSG00000053372|ENST00000330263|MRTO4	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.257859	1084.50117	1.1517	0.00062568	-2.0345	-0.0011052	-0.88275	-0.00047956	543.2562834148881	21.103	0.1686	21.089	21.041	21.21	-0.014004	1287	58	0.8449601	0.035031855	0.84344065	342.73962		14.2099	0.0051792	-0.00085997	-0.00075972	NaN	39.459	191	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25499			6040	583	3488	3557							-0.03770476325553318
FPHSTNFM	8	Unmodified	_FPHSTNFM_					0	0	0			REV__nc|ENSG00000105737|Q16478-2|GRIK5	REV__nc|ENSG00000105737|Q16478-2|GRIK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.71837005185	2	490.71837	979.422187	1.8151	0.00089071	-10.828	-0.0053136	-9.0131	-0.0044229	490.7133116487102	30.222	0.12065	30.222	30.173	30.294	0	1356	31	0.8024889	0.018486738	0.8024889	325.94983	0	7.50885						84	6	2	NaN	NaN	NaN	0.79607	1	7851	7851		9.746	0.62279	1	7413.2	+		6041	13101	3489	3558	4796	4796					-0.06834703559843547
FPHSTNFM	8	Unmodified						0	0	0			REV__nc|ENSG00000105737|Q16478-2|GRIK5	REV__nc|ENSG00000105737|Q16478-2|GRIK5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	490.71837	979.422187	1.8151	0.00089071	-10.828	-0.0053136	-9.0131	-0.0044229	490.7133116487102	30.222	0.12065	30.222	30.173	30.294	0	1356	31	0.8024889	0.018486738	0.8024889	325.94983		7.50885	0.0036873	0.0014475	-0.001089	NaN	9.746	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7413.2	+		6042	13101	3489	3558							-0.06834703559843547
FPHVQTDVL	9	Unmodified	_FPHVQTDVL_					0	0	0		ENST00000479285.5_1_1:114438859-114442862:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;ENSG00000134262|ENST00000369569|AP4B1	ENST00000479285.5_1_1:114438859-114442862:-|nuORF	ENST00000479285.5_1_1:114438859-114442862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2796490402001	2	528.279649	1054.54475	1.7319	0.0009149	-4.4087	-0.002329	-2.6768	-0.0014141	528.2769420624663	22.645	0.072378	22.645	22.621	22.694	0	1272	52	0.854179	0.0313375	0.854179	346.6025	0	12.715881						101	4	3	NaN	NaN	NaN	0.58159	1	10843	10843		6.2502	0.55606	1	8025.7			6043	2858	3490	3559	4797	4797					0.0196545644323578
FPHVQTDVL	9	Unmodified						0	0	0		ENST00000479285.5_1_1:114438859-114442862:-|nuORF;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;ENSG00000134262|ENST00000369569|AP4B1	ENST00000479285.5_1_1:114438859-114442862:-|nuORF	ENST00000479285.5_1_1:114438859-114442862:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.279649	1054.54475	1.1007	0.00058148	-0.31104	-0.00016431	0.78966	0.00041716	528.2794424703873	22.669	0.1447	22.655	22.631	22.776	-0.01354	1272	55	0.854179	0.03317547	0.8526596	346.60248		13.4617	0.0049872	0.001962	-0.00075972	NaN	6.2502	158	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12201			6044	2858	3490	3559							0.0196545644323578
FPIAEVFTL	9	Unmodified	_FPIAEVFTL_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5713600724	1	1036.57136	1035.56408	1.6692	0.0017303	-0.36464	-0.00037798	1.3046	0.0013523	1036.5707557056235	35.771	0.28932	35.771	35.675	35.964	0	141	184	1.5352125	0.108089924	1.5352125	311.55118	0	21.935425						1200	13	4	NaN	NaN	NaN	0.00010594	1	10024	10024		122.55	72.717	1	501790			6045	5870	3491	3560	4798	4798					0.047724127341325584
FPIAEVFTL	9	Unmodified	_FPIAEVFTL_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5713600724	1	1036.57136	1035.56408	1.4817	0.0015359	-0.94953	-0.00098426	0.53219	0.00055166	1036.5699423138105	35.746	0.55436	35.746	35.626	36.18	0.00053024	138	187	1.5369828	0.109844446	1.5354633	311.91043	0	22.291473						1452	24	3	NaN	NaN	NaN	3.3858E-07	1	9816	9816		128.99	81.855	1	538540			6046	5870	3491	3560	4799	4799					0.047724127341325584
FPIDDVFVGM	10	Oxidation (M)	_FPIDDVFVGM(Oxidation (M))_		FPIDDVFVGM(1)		FPIDDVFVGM(50)	0	0	1		nc|ENSG00000176383|Q9C0J1-2|B3GNT4;ENSG00000176383|ENST00000324189|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1155.539073666	1	1155.53907	1154.5318	2.2119	0.002556	-1.0145	-0.0011723	1.1974	0.0013836	1155.5374332979197	30.801	0.14477	30.801	30.753	30.897	0	63	76	1.5811787	0.04415846	1.5811787	320.44446	0	8.949219						360	7	3	NaN	NaN	NaN	0.070973	1	14953	14953		49.961	29.448	1	40104			6047	5021	3492	3561	4800	4800		526			-0.039287427311819556
FPIDDVFVGM	10	Oxidation (M)	_FPIDDVFVGM(Oxidation (M))_		FPIDDVFVGM(1)		FPIDDVFVGM(58)	0	0	1		nc|ENSG00000176383|Q9C0J1-2|B3GNT4;ENSG00000176383|ENST00000324189|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1155.539073666	1	1155.53907	1154.5318	1.8985	0.0021938	-0.9223	-0.0010658	0.97624	0.0011281	1155.537865917971	30.824	0.16893	30.818	30.722	30.891	-0.0057564	66	73	1.579413	0.04238987	1.5778936	320.08664	0	8.59079						360	8	3	NaN	NaN	NaN	0.033206	1	14462	14462		58.235	32.121	1	37029			6048	5021	3492	3561	4801	4801		526			-0.039287427311819556
FPIDLLDTL	9	Unmodified	_FPIDLLDTL_					0	0	0		nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5768393808	1	1046.57684	1045.56956	1.584	0.0016577	-4.8337	-0.0050588	-3.2498	-0.0034011	1046.5712469471998	37.29	0.40935	37.29	37.145	37.554	0	108	94	1.5546752	0.054797173	1.5546752	315.4612	0	11.1189575						798	18	3	NaN	NaN	NaN	1.096E-11	1	10456	10456		143.5	65.102	1	113680			6049	4291	3493	3562	4802	4802					0.04860091525961252
FPIDLLDTL	9	Unmodified	_FPIDLLDTL_					0	0	0		nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5768393808	1	1046.57684	1045.56956	1.2599	0.0013185	-3.5844	-0.0037514	-2.3246	-0.0024329	1046.5727440178118	37.287	0.33698	37.289	37.193	37.53	0.0022507	108	97	1.5546752	0.056561828	1.5531558	315.46118	0	11.477051						644	15	3	NaN	NaN	NaN	0.0081087	1	10247	10247		96.245	43.487	1	92731			6050	4291	3493	3562	4803	4803					0.04860091525961252
FPIEAGDMF	9	Unmodified	_FPIEAGDMF_					0	0	0		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4600950635	1	1026.4601	1025.45282	1.9565	0.0020083	-0.69645	-0.00071487	1.2601	0.0012934	1026.4593825365298	30.56	0.45854	30.56	30.391	30.849	0	255	73	1.4678029	0.042665005	1.4678029	297.90988	0	8.659393						568	20	2	NaN	NaN	NaN	0.021105	1	9585	9585		70.6	26.297	1	137490			6051	4203	3494	3563	4804	4804					-0.0588896996546282
FPIEAGDMF	9	Unmodified	_FPIEAGDMF_					0	0	0		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4600950635	1	1026.4601	1025.45282	1.4182	0.0014557	-0.56519	-0.00058015	0.85299	0.00087556	1026.4594431259732	30.559	0.57912	30.553	30.336	30.915	-0.0057564	252	106	1.4695803	0.0621835	1.4680609	298.27063	0	12.620941						931	25	4	NaN	NaN	NaN	0.0023856	1	9398	9398		109.86	41.749	1	159460			6052	4203	3494	3563	4805	4805					-0.0588896996546282
FPIEAGDMF	9	Oxidation (M)	_FPIEAGDM(Oxidation (M))F_		FPIEAGDM(1)F		FPIEAGDM(71)F	0	0	1		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.4550096855999	1	1042.45501	1041.44773	2.0116	0.002097	0.92849	0.00096791	2.9401	0.003065	1042.4562374060736	26.481	0.48318	26.481	26.312	26.795	0	231	115	1.4820169	0.06748116	1.4820169	300.73352	0	13.69342						711	21	4	NaN	NaN	NaN	0.021105	1	10258	10258		70.6	26.297	1	98839			6053	4203	3494	3564	4806	4806		451			-0.07133273828071651
FPIEAGDMF	9	Oxidation (M)	_FPIEAGDM(Oxidation (M))F_		FPIEAGDM(1)F		FPIEAGDM(50)F	0	0	1		nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	nc|ENSG00000163110|Q96HC4-7|PDLIM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.4550096855999	1	1042.45501	1041.44773	1.4845	0.0015476	2.1681	0.0022602	3.6527	0.0038078	1042.4574462570567	26.504	0.45848	26.494	26.301	26.759	-0.010645	228	106	1.4837929	0.062143803	1.4822735	301.09387	0	12.610321						535	20	2	NaN	NaN	NaN	0.042816	1	10050	10050		49.961	32.162	1	95597			6054	4203	3494	3564	4807	4807		451			-0.07133273828071651
FPIENRDVL	9	Unmodified	_FPIENRDVL_					0	0	0		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;NPLOC4|p.P470S|1|0.17|ENSG00000182446|chr17:81569057-81569057|G/A|missense_variant;ENST00000576713.6_1_17:79534551-79539120:-|nuORF	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7982059341001	2	551.798206	1101.58186	1.3509	0.0007454	-3.5204	-0.0019425	-2.1695	-0.0011971	551.7965696068303	22.404	0.072163	22.39	22.318	22.39	-0.013733	1230	40	0.8799654	0.023927689	0.878446	356.86932	0	9.703857						85	4	2	NaN	NaN	NaN	0.46215	1	12577	12577		11.17	0	1	7734.6			6055	5265	3495	3565	4808	4808					0.03513127989003806
FPIEVRHYL	9	Unmodified	_FPIEVRHYL_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.3243908948501	2	587.324391	1172.63423	1.7982	0.0010561	-1.8591	-0.0010919	-0.060924	-3.5782E-05	587.3231476155224	22.501	0.12043	22.501	22.453	22.573	0	1128	55	0.9424274	0.03301817	0.9424274	381.91446	0	13.380463						138	6	4	NaN	NaN	NaN	0.041983	1	15580	15580		50.315	10.856	1	16845			6056	2507	3496	3566	4809	4809					0.05481711122615707
FPIEYHDIW	9	Unmodified	_FPIEYHDIW_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;RRM2|p.L193Sfs*6|1|0.07|ENSG00000171848|chr2:10126878-10126879|-/T|frameshift_variant;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.2927564154501	2	610.292756	1218.57096	0.61177	0.00037336	-0.42426	-0.00025892	0.18751	0.00011444	610.2914378434313	27.759	0.14476	27.75	27.629	27.774	-0.009552	1158	76	0.92408	0.045895696	0.9225606	374.3151	0	18.590881						239	7	3	NaN	NaN	NaN	0.23112	1	16263	16263		23.334	6.7503	1	37749			6057	4811	3497	3567	4810	4810					-0.029582743852870408
FPIGDVAIVY	10	Unmodified	_FPIGDVAIVY_					0	0	0		nc|ENSG00000165124|Q4LDE5-2|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1;SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant;SVEP1|p.A3133Qfs*12|1|0.3|ENSG00000165124|chr9:110406203-110406203|C/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3000501313	2	547.30005	1092.58555	1.3333	0.00072974	2.8971	0.0015856	4.2305	0.0023153	547.3022153671435	15.174	0.096082	15.174	15.174	15.27	0	1263	37	0.85970795	0.02211219	0.85970795	348.68936	0	8.968506						86	5	2	NaN	NaN	NaN	0.68669	1	12511	12511		8.962	1.9776	1	8467.3			6058	4378	3498	3568	4811	4811					0.04295797762847542
FPIHVQTSL	9	Unmodified	_FPIHVQTSL_					0	0	0		ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2900167612502	2	521.290017	1040.56548	2.0826	0.0010856	-1.8567	-0.00096787	0.22588	0.00011775	521.2891460440682	23.465	0.14463	23.465	23.441	23.586	0	1272	97	0.854179	0.058984995	0.854179	346.6625	0	23.93863						314	7	4	NaN	NaN	NaN	0.006197	1	10243	10243		100.15	52.664	1	159690			6059	2775	3499	3569	4812	4812					0.04682046822927077
FPIHVQTSL	9	Unmodified	_FPIHVQTSL_					0	0	0		ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	ENST00000565356.5_1_16:68349816-68386396:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2900167612502	2	521.290017	1040.56548	2.1367	0.0011138	-2.6425	-0.0013775	-0.50575	-0.00026364	521.288695332843	23.513	0.14475	23.5	23.451	23.596	-0.013294	1272	79	0.854179	0.04794085	0.8526596	346.6625	0	19.456451						339	7	4	NaN	NaN	NaN	0.011693	1	10029	10029		87.778	40.297	1	166150			6060	2775	3499	3569	4813	4813					0.04682046822927077
FPIIAVTL	8	Unmodified	_FPIIAVTL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.5444170404002	1	873.544417	872.537141	0.86511	0.00075571	-1.2161	-0.0010623	-0.35101	-0.00030663	873.5437807248817	34.227	0.12065	34.225	34.177	34.298	-0.0012474	354	58	1.4090419	0.033893347	1.4075224	286.64777	0	6.89505						130	6	2	NaN	NaN	NaN	0.19048	1	5569	5569		50.74	9.2851	1	12401			6061	1709	3500	3570	4814	4814					0.09577348913614969
FPIIDDRNREL	11	Unmodified	_FPIIDDRNREL_					0	0	0		ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.2491308197	3	463.249131	1386.72556	0.99189	0.00045949	0.00090135	4.1755E-07	0.99279	0.00045991	463.2490824538488	21.561	0.1446	21.561	21.513	21.657	0	1455	37	0.7413668	0.02226597	0.7413668	449.84027	0	13.5104065						112	7	3	NaN	NaN	NaN	0.56282	1	19952	19952		9.0915	6.5309	1	12122			6062	2149	3501	3571	4815	4815					0.04766930029268224
FPIIDDRNREL	11	Unmodified	_FPIIDDRNREL_					0	0	0		ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	ENSG00000117592|ENST00000340385|PRDX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.2491308197	3	463.249131	1386.72556	0.90354	0.00041857	-1.1616	-0.00053813	-0.2581	-0.00011956	463.2483438495785	21.585	0.096331	21.571	21.523	21.619	-0.013895	1452	34	0.74322224	0.020409405	0.7417028	450.96606	0	12.38385						104	5	3	NaN	NaN	NaN	0.19358	1	19022	19022		19.737	12.93	1	12403			6063	2149	3501	3571	4816	4816					0.04766930029268224
FPIIRDQIF	9	Unmodified	_FPIIRDQIF_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8267664083	2	574.826766	1147.63898	1.1329	0.0006512	-8.0635	-0.0046351	-6.9306	-0.0039839	574.8221798922222	27.687	0.28961	27.677	27.605	27.895	-0.009552	1194	70	0.902037	0.042278767	0.9005176	365.639	0	17.137634						517	13	3	NaN	NaN	NaN	0.29341	1	14241	14241		19.336	3.8738	1	136350			6064	1763	3502	3572	4817	4817					0.07106595265372562
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8367997783502	2	594.8368	1187.65905	1.0656	0.00063383	-3.1722	-0.001887	-2.1067	-0.0012531	594.834948185774	36.446	0.096504	36.446	36.398	36.495	0	1110	34	0.95342636	0.020159304	0.95342636	386.3149	0	8.168274						109	5	3	NaN	NaN	NaN	0.52161	1	16086	16086		28.896	10.926	1	8185.6			6065	3918	3503	3573	4818	4818					0.07272346205331814
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8367997783502	2	594.8368	1187.65905	1.0547	0.00062738	-2.4027	-0.0014292	-1.348	-0.00080184	594.8357976129693	36.422	0.12064	36.422	36.398	36.519	0	1164	37	0.9204082	0.022033453	0.9204082	372.9364	0	8.927673						111	6	2	NaN	NaN	NaN	0.31689	1	16087	16087		41.785	23.815	1	13210			6066	3918	3503	3573	4819	4819					0.07272346205331814
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8367997783502	2	594.8368	1187.65905	1.1807	0.00070231	-4.1988	-0.0024976	-3.0181	-0.0017953	594.836183439062	36.445	0.12048	36.446	36.398	36.519	0.0016785	1161	40	0.9222442	0.023868322	0.92072475	373.68033	0	9.671112						132	6	3	NaN	NaN	NaN	0.60059	1	15478	15478		24.961	12.391	1	11272			6067	3918	3503	3573	4820	4820					0.07272346205331814
FPILFVEPNL	10	Unmodified	_FPILFVEPNL_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8367997783502	2	594.8368	1187.65905	1.8526	0.001102	-3.0082	-0.0017894	-1.1556	-0.00068737	595.3362869290686	36.421	0.072269	36.422	36.398	36.47	0.0016747	1107	31	0.9552588	0.018325627	0.9537394	387.0574	0	7.425293						44	4	2	NaN	NaN	NaN	0.73801	1	15479	15479		10.605	5.8759	1	3244.5			6068	3918	3503	3573	4821	4821					0.07272346205331814
FPIPEEYTF	9	Unmodified	_FPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7738651705499	2	571.773865	1141.53318	1.2345	0.00070585	-0.94076	-0.0005379	0.29373	0.00016795	571.7732204743776	30.897	0.38613	30.897	30.68	31.066	0	1230	76	0.8799654	0.0460099	0.8799654	356.71494	0	18.651184						464	17	4	NaN	NaN	NaN	0.20577	1	14510	14510		24.961	4.5124	1	84507			6069	3800	3504	3574	4822	4822					-0.031927853707884424
FPIPEEYTF	9	Unmodified	_FPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5404538744997	1	1142.54045	1141.53318	2.0888	0.0023865	-0.38511	-0.00044001	1.7037	0.0019465	1142.539919714013	30.897	0.28956	30.897	30.753	31.042	0	63	103	1.5811787	0.060084105	1.5811787	320.4876	0	12.178375						623	13	3	NaN	NaN	NaN	0.0072287	1	14511	14511		98.041	51.001	1	66423			6070	3800	3504	3574	4823	4823					-0.031927853707884424
FPIPEEYTF	9	Unmodified	_FPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7738651705499	2	571.773865	1141.53318	0.96187	0.00054997	-0.9733	-0.00055651	-0.01143	-6.5352E-06	572.274789971342	30.848	0.31372	30.842	30.698	31.011	-0.0057545	1227	88	0.88180584	0.05337143	0.8802864	357.461	0	21.635376						390	14	4	NaN	NaN	NaN	0.094712	1	14033	14033		36.586	18.617	1	74819			6071	3800	3504	3574	4824	4824					-0.031927853707884424
FPIPEEYTF	9	Unmodified						0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1142.54045	1141.53318	1.6642	0.0019014	-0.15052	-0.00017198	1.5137	0.0017295	1142.5388570394098	30.969	0.072428	30.964	30.94	31.012	-0.0050716	63	97	1.5811787	0.056543827	1.5796592	320.4876		11.460785	0.033143	0.00022005	-0.00075972	NaN	98.041	144	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16777			6072	3800	3504	3574							-0.031927853707884424
FPIPEEYTFI	10	Unmodified	_FPIPEEYTFI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.31589716075	2	628.315897	1254.61724	0.99595	0.00062577	-1.6424	-0.001032	-0.64648	-0.00040619	628.3142349372669	34.059	0.096588	34.059	34.01	34.107	0	1152	40	0.92775106	0.02385801	0.92775106	375.68118	0	9.661011						108	5	3	NaN	NaN	NaN	0.21269	1	17891	17891		34.439	12.604	1	10189			6073	3800	3505	3575	4825	4825					0.00011745726123990607
FPIPEEYTFI	10	Unmodified	_FPIPEEYTFI_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.31589716075	2	628.315897	1254.61724	0.84624	0.00053171	-1.228	-0.00077154	-0.38171	-0.00023984	628.3152995778112	34.13	0.1931	34.129	34.08	34.274	-0.0012474	1149	52	0.92958635	0.031192243	0.9280669	376.42432	0	12.63092						223	9	3	NaN	NaN	NaN	0.1877	1	17122	17122		36.586	10.786	1	19395			6074	3800	3505	3575	4826	4826					0.00011745726123990607
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4825450651001	1	960.482545	959.475269	1.1782	0.0011316	-1.4539	-0.0013964	-0.27574	-0.00026484	960.4815484353704	30.535	0.072403	30.535	30.511	30.584	0	330	49	1.4233059	0.028515935	1.4233059	289.14212	0	5.7929688						75	4	2	NaN	NaN	NaN	0.12945	1	7315	7315		31.561	12.443	1	5263.8			6075	1795	3506	3576	4827	4827					-0.006090025055186743
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4825450651001	1	960.482545	959.475269	1.0826	0.0010398	-0.28747	-0.00027611	0.79511	0.00076369	960.4793681890732	30.777	0.048277	30.777	30.728	30.777	0	336	34	1.419741	0.019609928	1.419741	288.4179	0	3.9837341						49	3	2	NaN	NaN	NaN	0.078597	1	7316	7316		38.918	8.3077	1	3086.3			6076	1795	3506	3576	4828	4828					-0.006090025055186743
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4825450651001	1	960.482545	959.475269	1.407	0.0013514	0.32456	0.00031173	1.7315	0.0016631	960.4833037743776	30.439	0.024141	30.439	30.439	30.463	0	333	49	1.4215236	0.028515935	1.4215236	288.78003	0	5.7929688						46	2	2	NaN	NaN	NaN	0.12945	1	7317	7317		31.561	18.973	1	3289.6			6077	1795	3506	3576	4829	4829					-0.006090025055186743
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.74491076585	2	480.744911	959.475269	1.4856	0.00071418	-1.9769	-0.0009504	-0.49137	-0.00023622	480.74366478936315	29.521	0.14479	29.514	29.442	29.586	-0.0070648	1356	61	0.8024889	0.03696549	0.8009695	326.0436	0	15.018707						184	7	3	NaN	NaN	NaN	0.042649	1	7171	7171		50.033	25.072	1	20543			6078	1795	3506	3576	4830	4830					-0.006090025055186743
FPIPGEPGF	9	Unmodified	_FPIPGEPGF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.4825450651001	1	960.482545	959.475269	1.4193	0.0013632	-1.7851	-0.0017146	-0.36579	-0.00035133	960.4822045279234	30.583	0.14476	30.577	30.529	30.673	-0.0057545	336	61	1.419741	0.035641074	1.4182216	288.4179	0	7.2404175						96	7	2	NaN	NaN	NaN	0.45297	1	7172	7172		11.548	3.2582	1	6650.2			6079	1795	3506	3576	4831	4831					-0.006090025055186743
FPIPGEPGFPL	11	Unmodified	_FPIPGEPGFPL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.8133246820502	2	585.813325	1169.6121	1.3548	0.00079365	-1.926	-0.0011283	-0.57119	-0.00033461	585.8124144608561	34.443	0.4098	34.443	34.298	34.708	-0.0006485	1230	97	0.8799654	0.058844924	0.878446	356.61273	0	23.847351						764	18	2	NaN	NaN	NaN	0.07049	1	14941	14941		44.638	14.028	1	105320			6080	1795	3507	3577	4832	4832					0.034074866542141535
FPIPGPVLL	9	Unmodified	_FPIPGPVLL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.5866162061001	1	952.586616	951.57934	0.84884	0.0008086	-1.3622	-0.0012976	-0.51337	-0.00048902	952.5847068832054	35.361	0.072357	35.361	35.313	35.385	0	291	40	1.446459	0.02313602	1.446459	293.88016	0	4.700592						67	4	2	NaN	NaN	NaN	0.033463	1	7134	7134		54.579	33.626	1	4632.1			6081	4393	3508	3578	4833	4833					0.10161324321984466
FPIPGPVLL	9	Unmodified	_FPIPGPVLL_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.5866162061001	1	952.586616	951.57934	1.1142	0.0010614	-0.31323	-0.00029837	0.80101	0.00076304	952.5845466034638	35.36	0.19289	35.361	35.264	35.457	0.00053024	288	49	1.4482387	0.028470516	1.4467193	294.24173	0	5.7843933						111	9	2	NaN	NaN	NaN	0.10053	1	6996	6996		35.745	0	1	7244.4			6082	4393	3508	3578	4834	4834					0.10161324321984466
FPIPLINRL	9	Unmodified	_FPIPLINRL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.8396768183001	2	541.839677	1081.6648	1.7457	0.00094591	-0.87278	-0.00047291	0.87296	0.000473	541.83900324882	30.246	0.16892	30.246	30.173	30.342	0	1215	58	0.8891654	0.034956157	0.8891654	360.68237	0	14.179657						241	8	3	NaN	NaN	NaN	0.049695	1	12069	12069		47.04	5.2556	1	46256			6083	13662	3509	3579	4835	4835					0.1272348950765263
FPIPLINRL	9	Unmodified	_FPIPLINRL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.8396768183001	2	541.839677	1081.6648	1.0202	0.00055276	-0.73993	-0.00040092	0.28023	0.00015184	541.8391393830093	30.269	0.21715	30.263	30.166	30.383	-0.0064106	1212	58	0.8910048	0.034952402	0.88948536	361.4285	0	14.178131						268	10	3	NaN	NaN	NaN	0.14301	1	11753	11753		29.598	7.7633	1	40071			6084	13662	3509	3579	4836	4836					0.1272348950765263
FPIQHHLEE	9	Unmodified	_FPIQHHLEE_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.8610957479	3	383.861096	1148.56146	1.6588	0.00063673	2.7122	0.0010411	4.3709	0.0016778	383.8613083527974	20.766	0.048216	20.766	20.742	20.79	0	1533	25	0.6930556	0.014884353	0.6930556	421.38477	0	9.049835						31	3	2	NaN	NaN	NaN	0.66196	1	14756	14756		1.1768	0	1	1666.1	+		6085	10750	3510	3580	4837	4837					-0.006880426708221421
FPIRDLDFSEF	11	Unmodified	_FPIRDLDFSEF_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.34043488955	2	693.340435	1384.66632	0.89785	0.00062251	-4.4798	-0.003106	-3.5819	-0.0024835	693.8376639988387	29.955	0.19307	29.949	29.876	30.07	-0.0064106	1086	43	0.9680805	0.02563101	0.9665611	391.61102	0	10.368347						151	9	2	NaN	NaN	NaN	0.73057	1	19003	19003		5.4499	1.1398	1	12409			6086	1371	3511	3581	4838	4838					-0.010629659849200834
FPISEETIKL	10	Unmodified	_FPISEETIKL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8291717115001	2	588.829172	1175.64379	2.6307	0.001549	-1.0023	-0.0005902	1.6284	0.00095884	588.8287575800239	25.66	0.38602	25.66	25.564	25.95	0	1200	91	0.89836043	0.055125415	0.89836043	364.04565	0	22.338654						993	17	5	NaN	NaN	NaN	5.2862E-09	1	15679	15679		138.61	77.339	1	663120			6087	1637;250	3512	3582	4839	4839					0.06299434617471888
FPISEETIKL	10	Unmodified	_FPISEETIKL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8291717115001	2	588.829172	1175.64379	2.5159	0.0014814	-1.2924	-0.00076098	1.2235	0.00072043	588.8283211438163	25.684	0.3861	25.672	25.503	25.89	-0.0116	1200	103	0.89836043	0.062475502	0.896841	364.04565	0	25.31717						978	17	4	NaN	NaN	NaN	6.8022E-06	1	15107	15107		121.31	60.038	1	683650			6088	1637;250	3512	3582	4840	4840					0.06299434617471888
FPISEETIKLL	11	Unmodified	_FPISEETIKLL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.3712037017001	2	645.371204	1288.72785	1.7259	0.0011139	-2.5498	-0.0016456	-0.82391	-0.00053173	645.3694276733759	29.039	0.19311	29.039	28.991	29.184	0	1137	37	0.9369253	0.022012115	0.9369253	379.2868	0	8.91095						207	9	3	NaN	NaN	NaN	0.43953	1	18579	18579		32.377	18.914	1	27546			6089	1637;250	3513	3583	4841	4841					0.09503965714384321
FPISEETIKLL	11	Unmodified	_FPISEETIKLL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	ENSG00000107625|ENST00000373585|DDX50;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3712037017001	2	645.371204	1288.72785	1.5275	0.00098582	-3.8665	-0.0024953	-2.339	-0.0015095	645.3692420284777	29.062	0.16892	29.055	29.007	29.175	-0.0077209	1137	49	0.9369253	0.029343128	0.93540585	379.28683	0	11.878723						197	8	4	NaN	NaN	NaN	0.15398	1	17750	17750		44.633	28.812	1	23988			6090	1637;250	3513	3583	4842	4842					0.09503965714384321
FPISREAFQAL	11	Unmodified	_FPISREAFQAL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.8456874429501	2	639.845687	1277.67682	2.2739	0.001455	-2.3599	-0.00151	-0.086015	-5.5036E-05	639.844196733528	25.781	0.21716	25.781	25.732	25.95	0	1134	52	0.9387595	0.03118217	0.9387595	380.0642	0	12.624359						319	10	4	NaN	NaN	NaN	0.012182	1	18376	18376		67.17	32.731	1	39661			6091	3729	3514	3584	4843	4843					0.0490906146017096
FPISREAFQAL	11	Unmodified	_FPISREAFQAL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.8456874429501	2	639.845687	1277.67682	2.5047	0.0016026	-1.966	-0.001258	0.53871	0.00034469	639.8445449720898	25.805	0.19309	25.793	25.745	25.938	-0.0116	1137	64	0.9369253	0.038523257	0.93540585	379.3216	0	15.596466						338	9	4	NaN	NaN	NaN	0.13233	1	17555	17555		36.622	10.507	1	40322			6092	3729	3514	3584	4844	4844					0.0490906146017096
FPITDVLQM	9	Unmodified	_FPITDVLQM_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2782604442	2	532.27826	1062.54197	1.4964	0.00079649	-5.1202	-0.0027254	-3.6238	-0.0019289	532.2750291655241	32.804	0.19301	32.804	32.707	32.9	0	1278	82	0.85049206	0.049776614	0.85049206	345.07297	0	20.196075						312	9	5	NaN	NaN	NaN	0.17818	1	11231	11231		26.732	3.3971	1	52539			6093	1863	3515	3585	4845	4845					0.01319864994047748
FPITDVLQM	9	Unmodified	_FPITDVLQM_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.5492444217998	1	1063.54924	1062.54197	1.6131	0.0017156	-2.7461	-0.0029206	-1.133	-0.001205	1063.5458890182033	32.804	0.12062	32.804	32.756	32.876	0	129	148	1.5422925	0.08675265	1.5422925	312.88348	0	17.599426						441	6	3	NaN	NaN	NaN	0.028349	1	11233	11233		61.271	35.156	1	73889			6094	1863	3515	3585	4846	4846					0.01319864994047748
FPITDVLQM	9	Unmodified	_FPITDVLQM_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.5492444217998	1	1063.54924	1062.54197	1.1232	0.0011946	-3.2728	-0.0034808	-2.1496	-0.0022862	1063.5457922270637	32.803	0.096542	32.8	32.751	32.848	-0.0031052	123	154	1.5458313	0.09031272	1.5443119	313.6014	0	18.321655						459	5	4	NaN	NaN	NaN	0.010404	1	10982	10982		91.563	49.779	1	68077			6095	1863	3515	3585	4847	4847					0.01319864994047748
FPITDVLQM	9	Oxidation (M)	_FPITDVLQM(Oxidation (M))_		FPITDVLQM(1)		FPITDVLQM(120)	0	0	1		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.5441590438998	1	1079.54416	1078.53688	1.4531	0.0015687	-1.1518	-0.0012434	0.30127	0.00032524	1079.543055322858	28.581	0.072409	28.581	28.532	28.605	0	141	109	1.5352125	0.063712955	1.5352125	311.38797	0	12.922913						270	4	3	NaN	NaN	NaN	0.00012056	1	11912	11912		121.66	82.741	1	36821			6096	1863	3515	3586	4848	4848		212			0.0007556113143891707
FPITDVLQM	9	Oxidation (M)	_FPITDVLQM(Oxidation (M))_		FPITDVLQM(1)		FPITDVLQM(64)	0	0	1		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.5441590438998	1	1079.54416	1078.53688	1.5797	0.0017053	-1.2648	-0.0013654	0.3149	0.00033995	1079.5434063406472	28.58	0.096519	28.572	28.523	28.62	-0.0083485	138	112	1.5369828	0.06548619	1.5354633	311.74704	0	13.282593						307	5	3	NaN	NaN	NaN	0.026469	1	11605	11605		63.731	40.396	1	35377			6097	1863	3515	3586	4849	4849		212			0.0007556113143891707
FPITQDREQL	10	Unmodified	_FPITQDREQL_					0	0	0		SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9;ENST00000472220.1_1_2:105708813-105716216:+|nuORF	SIK3-MRPS9|1|fusion	SIK3-MRPS9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8249520008501	2	623.824952	1245.63535	1.45	0.00090454	-4.4539	-0.0027785	-3.0039	-0.0018739	623.8231879338084	20.188	0.04817	20.174	20.126	20.174	-0.014141	1143	58	0.9332562	0.034880698	0.93173677	377.94006	0	14.12561						64	3	2	NaN	NaN	NaN	0.65008	1	16915	16915		13.949	4.3371	1	4963.5			6098	2982	3516	3587	4850	4850					0.0223588070086862
FPIVEQKRN	9	Unmodified	_FPIVEQKRN_					0	0	0			REV__ENST00000455976.6_1_15:48634225-48634321:+|nuORF	REV__ENST00000455976.6_1_15:48634225-48634321:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.5487406171667	3	377.548741	1129.62439	1.7734	0.00066954	-1.3122	-0.00049542	0.46118	0.00017412	377.548427120113	19.01	0.096016	18.996	18.972	19.068	-0.014059	1488	58	0.7209441	0.035283267	0.71942466	438.42825	0	21.456818						110	5	2	NaN	NaN	NaN	0.16939	1	13629	13629		19.592	3.0077	1	9478	+		6099	12244	3517	3588	4851	4851					0.06476523117225952
FPIVEQKRN	9	Unmodified						0	0	0			REV__ENST00000455976.6_1_15:48634225-48634321:+|nuORF	REV__ENST00000455976.6_1_15:48634225-48634321:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	377.548741	1129.62439	1.7734	0.00066954	-1.3122	-0.00049542	0.46118	0.00017412	377.548427120113	19.01	0.096016	18.996	18.972	19.068	-0.014059	1488	58	0.7209441	0.035283267	0.71942466	438.42825		21.456818	0.027768	0.00069187	0.00016919	NaN	19.592	110	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9478	+		6100	12244	3517	3588							0.06476523117225952
FPIVESVV	8	Unmodified	_FPIVESVV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.5029461562001	1	889.502946	888.49567	1.8202	0.0016191	-0.71283	-0.00063406	1.1074	0.00098504	889.502675221483	28.774	0.048231	28.774	28.75	28.798	0	396	52	1.3840506	0.030367494	1.3840506	281.4852	0	6.1760864						61	3	2	NaN	NaN	NaN	0.35933	1	5920	5920		38.608	12.856	1	3955.3			6101	5421	3518	3589	4852	4852					0.04696168154282532
FPIVESVV	8	Unmodified	_FPIVESVV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.5029461562001	1	889.502946	888.49567	1.9868	0.0017673	-1.0025	-0.00089176	0.98427	0.00087551	889.5021290437775	28.797	0.048275	28.789	28.765	28.813	-0.0083504	399	49	1.382264	0.028579712	1.3807446	281.12186	0	5.8124695						55	3	2	NaN	NaN	NaN	0.76633	1	5801	5801		13.737	0	1	3167.5			6102	5421	3518	3589	4853	4853					0.04696168154282532
FPKLAAQV	8	Unmodified	_FPKLAAQV_					0	0	0			REV__ENST00000526890.5_1_11:3050224-3063461:-|nuORF	REV__ENST00000526890.5_1_11:3050224-3063461:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.5192649224001	1	873.519265	872.511988	-0.34613	-0.00030235	1.565	0.0013671	1.2189	0.0010647	873.5205614995695	56.779	0.14418	56.778	56.754	56.898	-0.00056458	288	193	1.4482387	0.11407614	1.4467193	294.6219	0	23.207031						490	7	4	NaN	NaN	NaN	0.84692	1	5568	5568		1.4396	0	1	217470	+		6103	9079	3519	3590	4854	4854					0.07063294111037521
FPKQGSHQL	9	Unmodified	_FPKQGSHQL_					0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2774407022501	2	521.277441	1040.54033	1.5529	0.00080947	6.5728	0.0034262	8.1256	0.0042357	521.2814984522437	18.962	0.12008	18.948	18.924	19.044	-0.014059	1302	64	0.8357362	0.038757086	0.8342168	339.1777	0	15.729309						168	6	3	NaN	NaN	NaN	0.14787	1	10020	10020		28.896	3.0946	1	21800	+		6104	11253	3520	3591	4855	4855					0.021679920203496295
FPKQGSHQL	9	Unmodified						0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.277441	1040.54033	1.8635	0.0009714	5.5868	0.0029123	7.4503	0.0038837	521.2801096530679	18.94	0.19198	18.94	18.868	19.06	0	1299	61	0.8375814	0.036913514	0.8375814	339.92654		14.98111	-0.0037349	-0.00043799	0.0016823	NaN	28.896	227	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26809	+		6105	11253	3520	3591							0.021679920203496295
FPKQGSHQL	9	Unmodified						0	0	0			REV__ENSG00000204947|ENST00000378061|ZNF425	REV__ENSG00000204947|ENST00000378061|ZNF425	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.277441	1040.54033	1.5529	0.00080947	6.5728	0.0034262	8.1256	0.0042357	521.2814984522437	18.962	0.12008	18.948	18.924	19.044	-0.014059	1302	64	0.8357362	0.038757086	0.8342168	339.1777		15.729309	0.0037349	0.00058992	-0.0016823	NaN	28.896	168	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21800	+		6106	11253	3520	3591							0.021679920203496295
FPLAPLFAL	9	Unmodified	_FPLAPLFAL_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5866162061001	1	988.586616	987.57934	1.339	0.0013237	0.67487	0.00066717	2.0138	0.0019909	988.5864649796349	40.488	0.096184	40.488	40.44	40.537	0	174	40	1.5157272	0.023042917	1.5157272	307.79324	0	4.6792297						88	5	2	NaN	NaN	NaN	0.015198	1	8148	8148		78.076	12.4	1	5728.1			6107	2716	3521	3592	4856	4856					0.08505324321993157
FPLDAAIIF	9	Unmodified	_FPLDAAIIF_					0	0	0		ENST00000461035.5_1_1:45478567-45479041:+|nuORF;ENST00000491300.5_1_1:45478567-45479375:+|nuORF;ENST00000460334.5_1_1:45477931-45479375:+|nuORF;ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENST00000496439.1_1_1:45478597-45479553:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5607953861002	1	1006.5608	1005.55352	1.731	0.0017424	1.6005	0.001611	3.3315	0.0033534	1006.5625069045957	36.736	0.19268	36.736	36.567	36.76	0	165	115	1.5210435	0.067359686	1.5210435	308.79684	0	13.67511						474	9	3	NaN	NaN	NaN	0.03623	1	8814	8814		52.758	29.424	1	84525			6108	2493	3522	3593	4857	4857					0.05096430079720449
FPLDAAIIF	9	Unmodified	_FPLDAAIIF_					0	0	0		ENST00000461035.5_1_1:45478567-45479041:+|nuORF;ENST00000491300.5_1_1:45478567-45479375:+|nuORF;ENST00000460334.5_1_1:45477931-45479375:+|nuORF;ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENST00000496439.1_1_1:45478597-45479553:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	ENST00000461035.5_1_1:45478567-45479041:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5607953861002	1	1006.5608	1005.55352	1.5841	0.0015944	0.67228	0.00067669	2.2563	0.0022711	1006.5612530557472	36.734	0.19245	36.735	36.567	36.759	0.0016785	165	112	1.5210435	0.06558359	1.5195241	308.79684	0	13.314514						447	9	3	NaN	NaN	NaN	0.056143	1	8649	8649		44.302	7.7159	1	68060			6109	2493	3522	3593	4858	4858					0.05096430079720449
FPLDKSLLL	9	Unmodified	_FPLDKSLLL_					0	0	0		ENST00000492815.5_1_14:69676187-69701514:+|nuORF;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.3182428844501	2	523.318243	1044.62193	1.3025	0.00068161	-1.8821	-0.00098495	-0.57963	-0.00030333	523.317405639917	29.039	0.21723	29.039	28.894	29.112	0	1203	52	0.8965218	0.03126645	0.8965218	363.82858	0	12.688599						270	10	3	NaN	NaN	NaN	0.40649	1	10425	10425		13.463	0.46021	1	29996			6110	918	3523	3594	4859	4859					0.10140674659578508
FPLDKSLLL	9	Unmodified	_FPLDKSLLL_					0	0	0		ENST00000492815.5_1_14:69676187-69701514:+|nuORF;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2;EXD2|p.R226C|1|0.15|ENSG00000081177|chr14:69230557-69230557|C/T|missense_variant	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.3182428844501	2	523.318243	1044.62193	1.0743	0.0005622	-5.0035	-0.0026184	-3.9292	-0.0020562	523.3150751274864	29.135	0.16892	29.127	29.007	29.175	-0.0077229	1203	76	0.8965218	0.045980036	0.89500237	363.82858	0	18.659729						160	8	3	NaN	NaN	NaN	0.11656	1	10210	10210		33.425	8.4643	1	19921			6111	918	3523	3594	4860	4860					0.10140674659578508
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2860854763001	2	539.286085	1076.55762	2.2652	0.0012216	-1.6123	-0.00086948	0.65295	0.00035213	539.285530551672	28.46	0.43438	28.46	28.194	28.629	0	1266	106	0.85786515	0.06444168	0.85786515	348.00647	0	26.141785						987	19	3	NaN	NaN	NaN	0.028404	1	11832	11832		61.199	19.414	1	477690			6112	1970	3524	3595	4861	4861					0.022401515111141634
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2860854763001	2	539.286085	1076.55762	1.3421	0.00072376	-2.5388	-0.0013691	-1.1967	-0.00064537	539.2851807395148	28.435	0.2413	28.426	28.233	28.474	-0.0089798	1263	85	0.85970795	0.051567256	0.8581885	348.75403	0	20.919067						619	11	4	NaN	NaN	NaN	0.015447	1	11517	11517		77.761	27.799	1	207920			6113	1970	3524	3595	4862	4862					0.022401515111141634
FPLDLDVKM	9	Unmodified	_FPLDLDVKM_					0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2860854763001	2	539.286085	1076.55762	1.3624	0.00073474	-0.34978	-0.00018863	1.0126	0.00054611	539.2861950187454	28.532	0.14475	28.523	28.475	28.62	-0.0083485	1239	91	0.87444305	0.055274546	0.8729236	354.73154	0	22.422974						373	7	3	NaN	NaN	NaN	0.061945	1	11519	11519		41.839	24.98	1	220090			6114	1970	3524	3595	4863	4863					0.022401515111141634
FPLDLDVKM	9	Unmodified						0	0	0		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.286085	1076.55762	1.8816	0.0010147	4.9947	0.0026936	6.8764	0.0037083	539.2890553283079	28.17	0.048275	28.17	28.146	28.194	0	1254	82	0.8652351	0.049706757	0.8652351	350.99615		20.164337	-0.17644	0.0035497	-0.0038442	NaN	41.839	105	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8565.3			6115	1970	3524	3595							0.022401515111141634
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(78)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.28354278735	2	547.283543	1092.55253	1.6156	0.00088418	-2.0651	-0.0011302	-0.44957	-0.00024604	547.2826906783283	24.888	0.16891	24.888	24.743	24.912	0	1257	97	0.86339295	0.058934033	0.86339295	350.1841	0	23.903076						519	8	4	NaN	NaN	NaN	0.015447	1	12505	12505		77.761	45.308	1	167820			6116	1970	3524	3596	4864	4864		221			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(81)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.28354278735	2	547.283543	1092.55253	1.988	0.001088	0.43637	0.00023882	2.4244	0.0013268	547.2838386258713	24.985	0.36196	24.985	24.936	25.298	0	1257	103	0.86339295	0.062610626	0.86339295	350.18408	0	25.394257						723	16	2	NaN	NaN	NaN	0.013959	1	12506	12506		80.901	32.899	1	570280			6117	1970	3524	3596	4865	4865		221			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(78)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.28354278735	2	547.283543	1092.55253	1.5808	0.00086516	1.2685	0.00069421	2.8493	0.0015594	547.7866330909678	24.888	0.14475	24.875	24.755	24.9	-0.012394	1257	94	0.86339295	0.05708927	0.8618735	350.18408	0	23.154877						295	7	2	NaN	NaN	NaN	0.015447	1	12191	12191		77.761	48.865	1	140270			6118	1970	3524	3596	4866	4866		221			0.009958476484825951
FPLDLDVKM	9	Oxidation (M)	_FPLDLDVKM(Oxidation (M))_		FPLDLDVKM(1)		FPLDLDVKM(69)	0	0	1		ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1;ENSG00000114698|ENST00000354952|PLSCR4	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	ENST00000484560.1_1_3:146234424-146234930:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.28354278735	2	547.283543	1092.55253	2.1399	0.0011711	0.80054	0.00043812	2.9404	0.0016092	547.284292759588	24.96	0.43425	24.948	24.9	25.334	-0.012394	1257	106	0.86339295	0.064469576	0.8618735	350.18408	0	26.148254						691	19	2	NaN	NaN	NaN	0.022185	1	12192	12192		69.233	40.337	1	550520			6119	1970	3524	3596	4867	4867		221			0.009958476484825951
FPLEESVTL	9	Unmodified	_FPLEESVTL_					0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5404538745001	1	1034.54045	1033.53318	1.4985	0.0015503	1.9278	0.0019944	3.4263	0.0035447	1034.5437109782283	36.421	0.12048	36.422	36.422	36.543	0.0016747	174	106	1.5157272	0.061979175	1.5142077	307.6048	0	12.578186						162	6	2	NaN	NaN	NaN	0.27442	1	9721	9721		20.555	1.2707	1	12682	+		6120	11108	3525	3597	4868	4868					0.01775214629265065
FPLEQEADL	9	Unmodified	_FPLEQEADL_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5149674054999	1	1061.51497	1060.50769	1.631	0.0017313	-1.6392	-0.0017401	-0.0082667	-8.7753E-06	1061.5135950242818	26.384	0.21715	26.373	26.252	26.469	-0.011137	189	70	1.5068626	0.04078102	1.5053432	305.7034	0	8.2734375						349	10	3	NaN	NaN	NaN	0.028569	1	10867	10867		60.984	28.531	1	31281			6121	5047	3526	3598	4869	4869					-0.020142598931897737
FPLFNFEK	8	Unmodified	_FPLFNFEK_					0	0	0		ENSG00000109991|ENST00000263314|P2RX3	ENSG00000109991|ENST00000263314|P2RX3	ENSG00000109991|ENST00000263314|P2RX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2738353808	2	521.273835	1040.53312	1.927	0.0010045	-5.5797	-0.0029085	-3.6527	-0.001904	521.2709895681794	18.506	0.12	18.492	18.42	18.54	-0.01395	1311	49	0.83019954	0.029533982	0.8286801	336.93076	0	11.986176						140	6	2	NaN	NaN	NaN	0.57691	1	10016	10016		26.732	0	1	18445			6122	1744	3527	3599	4870	4870					0.014472594198878141
FPLGIELLL	9	Unmodified	_FPLGIELLL_					0	0	0		nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C;ENST00000464236.1_1_1:70728472-70740491:-|nuORF	nc|ENSG00000118454|Q8N6S4-2|ANKRD13C	nc|ENSG00000118454|Q8N6S4-2|ANKRD13C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.6233956429002	1	1014.6234	1013.61612	1.5957	0.001619	0.085219	8.6466E-05	1.6809	0.0017055	1014.6218390028854	41.304	0.16856	41.312	41.24	41.408	0.0082588	138	37	1.5369828	0.021239877	1.5354633	311.99918	0	4.3115845						90	8	2	NaN	NaN	NaN	0.17818	1	8966	8966		26.732	2.8811	1	5085.6			6123	2176	3528	3600	4871	4871					0.1098557614790252
FPLHLPLEL	9	Unmodified	_FPLHLPLEL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8184100599501	2	539.81841	1077.62227	0.65571	0.00035397	-1.2664	-0.00068365	-0.61073	-0.00032968	539.8177716926962	32.103	0.19303	32.099	32.051	32.244	-0.0037575	1224	61	0.883646	0.036801934	0.88212657	358.4604	0	14.929077						242	9	3	NaN	NaN	NaN	0.078597	1	11576	11576		38.918	11.129	1	35926			6124	1766	3529	3601	4872	4872					0.0865609437942112
FPLHLPLEL	9	Unmodified						0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.81841	1077.62227	1.276	0.00068883	-0.25409	-0.00013716	1.0219	0.00055166	539.8186194833859	32.08	0.14478	32.08	32.032	32.177	0	1227	70	0.88180584	0.042329073	0.88180584	357.7139		17.171234	-0.0096554	0.00044027	-0.00016038	NaN	38.918	192	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31442			6125	1766	3529	3601							0.0865609437942112
FPLLDMVDL	9	Unmodified	_FPLLDMVDL_					0	0	0		nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5	nc|ENSG00000069998|Q9BXW7-2|HDHD5	nc|ENSG00000069998|Q9BXW7-2|HDHD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5539954486999	1	1062.554	1061.54672	1.0593	0.0011256	-0.88125	-0.00093637	0.17808	0.00018922	1062.5529675427563	38.203	0.12011	38.203	38.155	38.275	0	102	46	1.5582114	0.026525974	1.5582114	316.11676	0	5.3813477						75	6	2	NaN	NaN	NaN	0.025843	1	11182	11182		64.55	11.792	1	4549.4			6126	751	3530	3602	4873	4873					0.018407491368179763
FPLMICLFH	9	Unmodified	_FPLMICLFH_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|36|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|36|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|36|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.78774109575	2	560.787741	1119.56093	1.6963	0.00095129	5.5586	0.0031172	7.255	0.0040685	560.7917678919492	20.069	0.1201	20.069	20.045	20.165	0	1230	46	0.8799654	0.027608931	0.8799654	356.79846	0	11.19455						142	6	3	NaN	NaN	NaN	0.36886	1	13653	13653		15.013	5.8897	1	16599			6127	7840	3531	3603	4874	4874					0.005931230841042634
FPLPTASSPFL	11	Unmodified	_FPLPTASSPFL_					0	0	0		ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	ENST00000311481.10_1_11:66043945-66044302:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8186070252001	2	588.818607	1175.62266	0.49681	0.00029253	-2.0437	-0.0012034	-1.5469	-0.00091084	588.8169838509933	35.505	0.21705	35.505	35.409	35.626	0.00052643	1176	76	0.9130621	0.045950234	0.91154265	370.00336	0	18.620575						257	10	3	NaN	NaN	NaN	0.10183	1	15102	15102		39.459	3.2239	1	35379			6128	6451	3532	3604	4875	4875					0.0418746930861289
FPLQFGREVL	10	Unmodified	_FPLQFGREVL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3374982701001	2	603.337498	1204.66044	1.33	0.00080246	-4.101	-0.0024743	-2.7709	-0.0016718	603.3359634214889	27.784	0.16892	27.784	27.688	27.857	0	1146	52	0.93142134	0.031195581	0.93142134	377.33762	0	12.63797						178	8	2	NaN	NaN	NaN	0.37846	1	16618	16618		30.035	5.6352	1	22576			6129	1128	3533	3605	4876	4876					0.06629980294087545
FPLQFGREVL	10	Unmodified						0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	603.337498	1204.66044	0.66848	0.00040332	-4.5835	-0.0027654	-3.9151	-0.0023621	603.3355306895428	27.832	0.19311	27.822	27.702	27.895	-0.009552	1146	52	0.93142134	0.031192243	0.9299019	377.33762		12.636627	0.018942	-0.00025906	-0.00075972	NaN	30.035	179	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23297			6130	1128	3533	3605							0.06629980294087545
FPLRESAL	8	Unmodified	_FPLRESAL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5199932039001	1	932.519993	931.512717	1.0393	0.00096917	4.2628	0.0039751	5.3021	0.0049443	932.5257297279243	31.525	0.096563	31.525	31.501	31.597	0	306	58	1.4375578	0.033832073	1.4375578	292.16138	0	6.8758545						148	5	2	NaN	NaN	NaN	0.43738	1	6641	6641		34.439	5.7723	1	16665	+		6131	9275	3534	3606	4877	4877					0.04422088760088627
FPLSELVEF	9	Unmodified	_FPLSELVEF_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5611893166	1	1080.56119	1079.55391	0.61017	0.00065933	-2.6692	-0.0028842	-2.059	-0.0022249	1080.5574556350361	35.072	0.16894	35.072	35.023	35.192	0	105	121	1.5564433	0.070717216	1.5564433	315.6905	0	14.343445						321	8	2	NaN	NaN	NaN	0.023074	1	11961	11961		68.108	18.275	1	47004			6132	1820	3535	3607	4878	4878					0.017318050088988457
FPLSELVEF	9	Unmodified	_FPLSELVEF_					0	0	0		nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-3|NOP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5611893166	1	1080.56119	1079.55391	1.4686	0.0015869	-3.9105	-0.0042255	-2.4419	-0.0026386	1080.556506100388	35.094	0.14478	35.094	35.022	35.167	-4.5776E-05	102	118	1.5582114	0.06895292	1.556692	316.0491	0	13.985596						308	7	2	NaN	NaN	NaN	0.032764	1	11655	11655		55.494	18.907	1	46382			6133	1820	3535	3607	4879	4879					0.017318050088988457
FPLSESQTLL	10	Unmodified	_FPLSESQTLL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.8056966152001	2	567.805697	1133.59684	0.96804	0.00054966	-0.24756	-0.00014057	0.72048	0.0004091	568.3073567567969	29.256	0.16895	29.248	29.175	29.344	-0.0077229	1188	49	0.90571284	0.029406548	0.9041934	367.18295	0	11.921661						190	8	3	NaN	NaN	NaN	0.22448	1	13771	13771		33.425	8.8633	1	39050			6134	2089	3536	3608	4880	4880					0.035385750663408544
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.6233956428999	1	1002.6234	1001.61612	0.94819	0.00095068	-1.0776	-0.0010804	-0.12937	-0.00012971	1002.6217411055183	39.044	0.26528	39.044	39.02	39.286	0	183	76	1.510409	0.04431784	1.510409	306.65414	0	8.997742						301	12	2	NaN	NaN	NaN	0.078597	1	8671	8671		38.918	7.3568	1	33359			6135	3097;5222	3537	3609	4881	4881					0.11537576147884465
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.6233956428999	1	1002.6234	1001.61612	1.0818	0.0010846	-0.95032	-0.00095282	0.13149	0.00013183	1002.6245903203206	39.694	0.096428	39.694	39.694	39.791	0	189	52	1.5068626	0.030136228	1.5068626	305.93414	0	6.1184387						69	5	2	NaN	NaN	NaN	0.03623	1	8672	8672		52.758	8.4559	1	3923.7			6136	3097;5222	3537	3609	4882	4882					0.11537576147884465
FPLSITLVL	9	Unmodified	_FPLSITLVL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.6233956428999	1	1002.6234	1001.61612	1.5239	0.0015279	-0.46456	-0.00046578	1.0594	0.0010621	1002.6235623235799	39.018	0.19293	39.023	38.999	39.192	0.0046806	180	85	1.5121819	0.049622893	1.5106624	307.0141	0	10.074768						368	9	3	NaN	NaN	NaN	0.024986	1	8498	8498		65.672	9.7247	1	43141			6137	3097;5222	3537	3609	4883	4883					0.11537576147884465
FPLSPDWQV	9	Unmodified	_FPLSPDWQV_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF;ENST00000434365.1_1_X:114938170-114938437:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.77419952155	2	544.7742	1087.53385	1.4625	0.00079676	-1.5519	-0.00084543	-0.089341	-4.8671E-05	544.7731533593799	30.92	0.41031	30.915	30.771	31.181	-0.0050716	1224	97	0.883646	0.058927655	0.88212657	358.41916	0	23.901886						600	18	2	NaN	NaN	NaN	0.089764	1	11972	11972		37.302	10.571	1	172850			6138	6120	3538	3610	4884	4884					-0.00641945931056398
FPLSQPFSL	9	Unmodified	_FPLSQPFSL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.5509589813	1	1035.55096	1034.54368	1.3598	0.0014082	-0.70763	-0.00073279	0.6522	0.00067539	1035.5505671734609	32.249	0.362	32.249	32.08	32.442	0	156	97	1.5263584	0.056705832	1.5263584	309.75836	0	11.507843						452	16	2	NaN	NaN	NaN	0.032689	1	9979	9979		55.592	16.133	1	48066			6139	4004	3539	3611	4885	4885					0.027792420743253388
FPLSTNSS	8	Unmodified	_FPLSTNSS_					0	0	0			REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4097740525001	1	852.409774	851.402498	0.93517	0.00079715	4.5761	0.0039008	5.5113	0.0046979	852.4138056319722	30.848	0.28958	30.842	30.698	30.987	-0.0057545	447	73	1.3536539	0.042961	1.3521345	275.486	0	8.743103						362	13	3	NaN	NaN	NaN	0.69898	1	5271	5271		19.118	5.0767	1	39865	+		6140	9912	3540	3612	4886	4886					-0.02914756298946486
FPLSTNSS	8	Unmodified						0	0	0			REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	852.409774	851.402498	0.93517	0.00079715	4.5761	0.0039008	5.5113	0.0046979	852.4138056319722	30.848	0.28958	30.842	30.698	30.987	-0.0057545	447	73	1.3536539	0.042961	1.3521345	275.486		8.743103	0.020699	8.5102E-05	0.00013516	NaN	19.118	362	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39865	+		6141	9912	3540	3612							-0.02914756298946486
FPLSYVEVL	9	Unmodified	_FPLSYVEVL_					0	0	0		nc|ENSG00000141985|Q99961-3|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5819247586999	1	1066.58192	1065.57465	1.104	0.0011775	-0.21077	-0.0002248	0.89321	0.00095268	1066.5804575251973	33.407	0.16894	33.407	33.335	33.504	0	123	82	1.5458313	0.047766924	1.5458313	313.58997	0	9.690094						261	8	3	NaN	NaN	NaN	0.20577	1	11374	11374		24.961	4.4056	1	21362			6142	3350	3541	3613	4887	4887					0.044483953885674055
FPLSYVEVL	9	Unmodified	_FPLSYVEVL_					0	0	0		nc|ENSG00000141985|Q99961-3|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5819247586999	1	1066.58192	1065.57465	0.54665	0.00058305	0.50924	0.00054314	1.0559	0.0011262	1066.5823036518632	33.382	0.19304	33.38	33.332	33.525	-0.0018501	120	76	1.5476005	0.044223905	1.5460811	313.94885	0	8.971344						219	9	2	NaN	NaN	NaN	0.062072	1	11112	11112		41.785	10.109	1	21747			6143	3350	3541	3613	4888	4888					0.044483953885674055
FPLTCTDIDL	10	Unmodified	_FPLTCTDIDL_					0	0	0		nc|ENSG00000086717|O14829-4|PPEF1;nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-4|PPEF1	nc|ENSG00000086717|O14829-4|PPEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2784574094501	2	569.278457	1136.54236	1.0396	0.00059182	-8.631	-0.0049134	-7.5914	-0.0043216	569.2761461156124	22.476	0.096191	22.462	22.366	22.462	-0.013733	1239	79	0.87444305	0.047852874	0.8729236	354.49493	0	19.399292						172	5	3	NaN	NaN	NaN	0.73444	1	13860	13860		5.6942	0.78442	1	17967			6144	994	3542	3614	4889	4889					-0.020447600767283802
FPLTKVYVV	9	Unmodified	_FPLTKVYVV_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3207855734	2	533.320786	1064.62702	2.238	0.0011936	-2.8005	-0.0014935	-0.56246	-0.00029997	533.3197325233103	25.467	0.2895	25.467	25.346	25.636	0	1221	85	0.885486	0.05155611	0.885486	359.26215	0	20.917511						383	13	3	NaN	NaN	NaN	0.25548	1	11349	11349		21.771	5.1869	1	44068			6145	955	3543	3615	4890	4890					0.09728978522161924
FPLTKVYVV	9	Unmodified	_FPLTKVYVV_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.3207855734	2	533.320786	1064.62702	1.4606	0.00077896	-0.45194	-0.00024103	1.0086	0.00053793	533.3203792545421	25.467	0.24128	25.455	25.358	25.6	-0.012011	1221	79	0.885486	0.04786837	0.88396657	359.26215	0	19.421295						432	11	3	NaN	NaN	NaN	0.27507	1	11085	11085		20.513	0.064659	1	49359			6146	955	3543	3615	4891	4891					0.09728978522161924
FPLTRLGQLK	10	Unmodified	_FPLTRLGQLK_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.57651918346664	3	391.576519	1171.70773	2.2236	0.00087071	-1.4371	-0.00056272	0.78654	0.00030799	391.5758686270831	17.69	0.55169	17.676	17.412	17.964	-0.013786	1407	61	0.77102906	0.037053704	0.7695096	468.68372	0	22.523743						775	24	4	NaN	NaN	NaN	0.26393	1	15005	15005		19.904	0	1	333300			6147	478	3544	3616	4892	4892					0.12874259565069224
FPLTTESAM	9	Unmodified	_FPLTTESAM_					0	0	0		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4706597498	1	996.47066	995.463383	2.0379	0.0020307	-0.33958	-0.00033838	1.6983	0.0016923	996.4700428691489	24.84	0.41022	24.84	24.695	25.105	0	258	88	1.4660252	0.05155623	1.4660252	297.66803	0	10.468201						517	18	3	NaN	NaN	NaN	0.018156	1	8402	8402		74.332	49.371	1	78669			6148	5765	3545	3617	4893	4893					-0.034529873110273
FPLTTESAM	9	Oxidation (M)	_FPLTTESAM(Oxidation (M))_		FPLTTESAM(1)		FPLTTESAM(98)	0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4655743719001	1	1012.46557	1011.4583	2.0243	0.0020496	0.49114	0.00049726	2.5155	0.0025468	1012.4658258022642	21.633	0.26511	21.633	21.464	21.73	0	255	91	1.4678029	0.05331993	1.4678029	297.96457	0	10.823975						456	12	3	NaN	NaN	NaN	0.0072287	1	9020	9020		98.041	67.431	1	68513			6149	5765	3545	3618	4894	4894		587			-0.04697291173636131
FPLTTESAM	9	Oxidation (M)	_FPLTTESAM(Oxidation (M))_		FPLTTESAM(1)		FPLTTESAM(77)	0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4655743719001	1	1012.46557	1011.4583	1.8591	0.0018823	0.23263	0.00023553	2.0917	0.0021178	1012.4671525061486	21.609	0.21683	21.595	21.426	21.643	-0.013897	255	82	1.4678029	0.047985315	1.4662834	297.96457	0	9.741028						444	10	4	NaN	NaN	NaN	0.016254	1	8848	8848		76.739	52.177	1	58143			6150	5765	3545	3618	4895	4895		587			-0.04697291173636131
FPLTTESAM	9	Oxidation (M)						0	0	1		ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	ENST00000416139.1_1_1:212482446-212482779:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.46557	1011.4583	1.759	0.0017809	0.13138	0.00013302	1.8904	0.001914	1012.4657359818336	21.705	0.16849	21.691	21.667	21.836	-0.013897	258	94	1.4660252	0.055100203	1.4645058	297.60373		11.185364	0.029141	-0.00028927	-0.0016485	NaN	98.041	395	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52394			6151	5765	3545	3618				587			-0.04697291173636131
FPMADLLL	8	Unmodified	_FPMADLLL_					0	0	0		nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3	nc|ENSG00000142082|Q9NTG7-2|SIRT3	nc|ENSG00000142082|Q9NTG7-2|SIRT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4957522883002	1	919.495752	918.488476	1.104	0.0010152	0.079784	7.3362E-05	1.1838	0.0010885	919.4965388947112	35.601	0.072353	35.602	35.553	35.626	0.00053024	291	40	1.446459	0.02313602	1.4449396	294.03116	0	4.703003						69	4	2	NaN	NaN	NaN	0.50567	1	6256	6256		30.791	2.1246	1	4464.7			6152	3355	3546	3619	4896	4896					0.0259711228221704
FPMAPKFFKP	10	Unmodified	_FPMAPKFFKP_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.8878172733667	3	403.887817	1208.64162	1.6629	0.00067163	4.8059	0.0019411	6.4688	0.0026127	403.89016151803537	18.82	0.21594	18.82	18.7	18.916	0	1467	37	0.7339432	0.02227813	0.7339432	445.98196	0	13.537323						182	10	3	NaN	NaN	NaN	0.61246	1	16704	16704		7.6826	0	1	24330	+	+	6153	8276	3547	3620	4897	4897					0.045647273986787695
FPMDFNVTL	9	Unmodified	_FPMDFNVTL_					0	0	0		ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5179442934	1	1083.51794	1082.51067	0.78595	0.00085159	1.5717	0.001703	2.3577	0.0025546	1084.5233060055182	33.647	0.38615	33.645	33.476	33.863	-0.0018463	105	67	1.5564433	0.03890264	1.5549239	315.6796	0	7.8902893						336	17	2	NaN	NaN	NaN	0.03618	1	11769	11769		52.78	21.104	1	37251			6154	4013	3548	3621	4898	4898					-0.02728708040035599
FPMDFNVTL	9	Oxidation (M)	_FPM(Oxidation (M))DFNVTL_		FPM(1)DFNVTL		FPM(58)DFNVTL	0	0	1		ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5128589155	1	1099.51286	1098.50558	1.6372	0.0018001	-7.2239	-0.0079428	-5.5867	-0.0061427	1099.502215008541	29.955	0.19303	29.949	29.78	29.973	-0.0064106	84	112	1.5688156	0.06541693	1.5672961	318.13065	0	13.265503						422	9	3	NaN	NaN	NaN	0.030669	1	12443	12443		58.235	30.447	1	64546			6155	4013	3548	3622	4899	4899		432			-0.0397301190264443
FPMPEDFPNFL	11	Unmodified	_FPMPEDFPNFL_					0	0	0		FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.31283154305	2	677.312832	1352.61111	1.1223	0.00076014	-2.5123	-0.0017016	-1.39	-0.00094148	677.3112725985429	36.88	0.096233	36.88	36.808	36.904	0	1122	46	0.9460945	0.027495861	0.9460945	382.80682	0	11.125305						142	5	3	NaN	NaN	NaN	0.51407	1	19572	19572		17.97	10.985	1	12742			6156	1114	3549	3623	4900	4900					-0.05109095777038419
FPMPEDFPNFL	11	Unmodified	_FPMPEDFPNFL_					0	0	0		FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.31283154305	2	677.312832	1352.61111	1.3506	0.0009148	-0.67874	-0.00045972	0.6719	0.00045509	677.3121055369564	36.854	0.072262	36.856	36.784	36.856	0.0022507	1119	43	0.9479278	0.025661409	0.94640833	383.54858	0	10.383087						61	4	2	NaN	NaN	NaN	0.57257	1	18694	18694		15.822	4.0831	1	5167.4			6157	1114	3549	3623	4901	4901					-0.05109095777038419
FPMPEDFPNFL	11	Unmodified	_FPMPEDFPNFL_					0	0	0		FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.31283154305	2	677.312832	1352.61111	0.88184	0.00059728	1.5194	0.0010291	2.4012	0.0016264	677.3139234784039	36.95	0.12008	36.952	36.904	37.024	0.0022507	1122	64	0.9460945	0.038481772	0.9445751	382.80682	0	15.570404						170	6	2	NaN	NaN	NaN	0.085722	1	18695	18695		40.957	25.135	1	17620			6158	1114	3549	3623	4902	4902					-0.05109095777038419
FPMPEDFPNFL	11	Unmodified						0	0	0		FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant;ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	FMO2|p.A328Cfs*5|1|0.18|ENSG00000094963|chr1:171205427-171205428|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	677.312832	1352.61111	1.0506	0.00071159	-0.079422	-5.3794E-05	0.97119	0.0006578	677.8143134321951	36.976	0.21675	36.976	36.928	37.145	0	1119	61	0.9479278	0.036655188	0.9479278	383.54858		14.83136	0.012016	-0.00097529	0.0016763	NaN	40.957	249	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22385			6159	1114	3549	3623							-0.05109095777038419
FPMTDLDML	9	Unmodified	_FPMTDLDML_					0	0	0		nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1;ENST00000404284.6_1_22:35717823-35727385:+|nuORF	nc|ENSG00000100284|O60784-4|TOM1	nc|ENSG00000100284|O60784-4|TOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.4896806324	1	1082.48968	1081.4824	1.407	0.0015231	1.1701	0.0012666	2.5771	0.0027897	1082.4904082157002	33.044	0.072289	33.042	32.969	33.042	-0.0024757	66	52	1.579413	0.030021429	1.5778936	320.34216	0	6.0890503						87	4	2	NaN	NaN	NaN	0.094712	1	11719	11719		36.586	16.031	1	8028.4			6160	1214	3550	3624	4903	4903					-0.0550777401160758
FPNAIEHTL	9	Unmodified	_FPNAIEHTL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2718240081001	2	521.271824	1040.5291	1.9963	0.0010406	-1.1699	-0.00060981	0.8264	0.00043078	521.2703955029941	21.513	0.40947	21.513	21.248	21.657	0	1272	97	0.854179	0.05899781	0.854179	346.66266	0	23.943848						981	18	5	NaN	NaN	NaN	0.00012056	1	10236	10236		121.66	62.214	1	433930			6161	2684	3551	3625	4904	4904					0.010451699261921021
FPNAIEHTL	9	Unmodified	_FPNAIEHTL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2718240081001	2	521.271824	1040.5291	2.1182	0.0011041	0.33524	0.00017475	2.4534	0.0012789	521.2708067900898	21.537	0.36108	21.523	21.306	21.667	-0.014004	1269	88	0.8560222	0.053458035	0.85450274	347.4107	0	21.695557						943	16	4	NaN	NaN	NaN	0.0021374	1	10017	10017		110.61	60.573	1	503550			6162	2684	3551	3625	4905	4905					0.010451699261921021
FPNALVTKL	9	Unmodified	_FPNALVTKL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.80275999575	2	501.80276	1001.59097	1.5417	0.00077364	-2.0526	-0.00103	-0.51091	-0.00025638	501.80162220671036	24.092	0.19307	24.092	24.019	24.213	0	1296	61	0.8394264	0.03689754	0.8394264	340.8483	0	14.982208						250	9	4	NaN	NaN	NaN	0.0040343	1	8670	8670		104.89	46.655	1	48920			6163	4649	3552	3626	4906	4906					0.09023521345329755
FPNALVTKL	9	Unmodified	_FPNALVTKL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.80275999575	2	501.80276	1001.59097	1.2905	0.0006476	-1.7389	-0.00087259	-0.44838	-0.000225	501.8016380054156	24.14	0.14475	24.127	24.079	24.224	-0.012749	1296	55	0.8394264	0.033207774	0.83790696	340.8483	0	13.483978						225	7	3	NaN	NaN	NaN	0.017791	1	8496	8496		74.794	44.184	1	45462			6164	4649	3552	3626	4907	4907					0.09023521345329755
FPNATDYWTF	10	Unmodified	_FPNATDYWTF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2798460054499	2	631.279846	1260.54514	1.2018	0.00075867	-2.0425	-0.0012894	-0.84071	-0.00053072	631.7800015683479	32.177	0.16891	32.177	32.08	32.249	0	1164	52	0.9204082	0.031215787	0.9204082	372.68866	0	12.639832						122	8	2	NaN	NaN	NaN	0.5626	1	18004	18004		16.858	4.8096	1	12528			6165	5616	3553	3627	4908	4908					-0.0747116862760322
FPNATDYWTF	10	Unmodified						0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	631.279846	1260.54514	0.7133	0.00045029	-1.4613	-0.00092249	-0.74801	-0.0004722	631.2796630348603	32.151	0.26545	32.148	32.051	32.316	-0.0037613	1161	52	0.9222442	0.031205654	0.92072475	373.4321		12.635712	-0.014492	0.00034471	0.00015829	NaN	16.858	213	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20969			6166	5616	3553	3627							-0.0747116862760322
FPNFDKQEL	9	Unmodified	_FPNFDKQEL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2823886944001	2	569.282389	1136.55022	1.1273	0.00064178	-3.7365	-0.0021271	-2.6092	-0.0014853	569.2804094839969	22.573	0.19292	22.559	22.438	22.631	-0.01354	1212	118	0.8910048	0.071736634	0.88948536	361.20892	0	29.081696						324	9	3	NaN	NaN	NaN	0.057383	1	13863	13863		43.776	19.375	1	50570			6167	4201	3554	3628	4909	4909					-0.012588647649408813
FPNGQGSIGG	10	Unmodified	_FPNGQGSIGG_					0	0	0			REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4424711644002	1	933.442471	932.435195	2.0596	0.0019225	4.7443	0.0044286	6.8039	0.0063511	933.4467485111708	21.994	0.096277	21.98	21.956	22.053	-0.013897	360	43	1.405474	0.024977922	1.4039545	285.63672	0	5.0763245						66	5	2	NaN	NaN	NaN	0.60686	1	6510	6510		14.425	3.8201	1	3271.2	+		6168	8445	3555	3629	4910	4910					-0.03372549176083339
FPNGQGSIGG	10	Unmodified						0	0	0			REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	933.442471	932.435195	2.0596	0.0019225	4.7443	0.0044286	6.8039	0.0063511	933.4467485111708	21.994	0.096277	21.98	21.956	22.053	-0.013897	360	43	1.405474	0.024977922	1.4039545	285.63672		5.0763245	0.10136	-0.0026771	-0.019472	NaN	14.425	66	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3271.2	+		6169	8445	3555	3629							-0.03372549176083339
FPNIEGQNNKL	11	Unmodified	_FPNIEGQNNKL_					0	0	0		ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3304015195001	2	637.330402	1272.64625	1.798	0.0011459	-2.3173	-0.0014769	-0.51931	-0.00033097	637.3290626482857	20.213	0.024059	20.213	20.213	20.237	0	1164	31	0.9204082	0.01836127	0.9204082	372.65027	0	7.434021						38	2	2	NaN	NaN	NaN	0.74794	1	18276	18276		4.3102	0	1	3724.1			6170	473	3556	3630	4911	4911					0.020832830751487563
FPNIEGQNNKL	11	Unmodified						0	0	0		ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.330402	1272.64625	2.0408	0.0013006	-3.608	-0.0022995	-1.5673	-0.00099886	637.3281817231191	20.237	0.048065	20.222	20.198	20.246	-0.014143	1164	37	0.9204082	0.022033453	0.91888875	372.65027		8.920837	0.0048637	-0.00058092	-0.00075972	NaN	4.3102	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6264.8			6171	473	3556	3630							0.020832830751487563
FPNIIDVSI	9	Unmodified	_FPNIIDVSI_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.28440006709997	2	509.2844	1016.55425	1.036	0.00052763	-3.0689	-0.001563	-2.0329	-0.0010353	509.28338653889847	33.311	0.1448	33.311	33.214	33.359	0	1320	40	0.824661	0.02400285	0.824661	334.78604	0	9.744385						134	7	3	NaN	NaN	NaN	0.18779	1	9243	9243		26.115	2.7805	1	14469			6172	1145	3557	3631	4912	4912					0.04663224728756177
FPNIIDVSI	9	Unmodified	_FPNIIDVSI_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.28440006709997	2	509.2844	1016.55425	0.56932	0.00028995	-1.1797	-0.00060079	-0.61034	-0.00031084	509.28335969040006	33.285	0.21718	33.283	33.186	33.403	-0.0024757	1320	88	0.824661	0.053498566	0.8231416	334.786	0	21.71872						279	10	3	NaN	NaN	NaN	0.2961	1	9068	9068		19.164	2.5794	1	27217			6173	1145	3557	3631	4913	4913					0.04663224728756177
FPNIVIKGSEL	11	Unmodified	_FPNIVIKGSEL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.85043846985	2	608.850438	1215.68632	1.9723	0.0012008	-1.4091	-0.00085796	0.56314	0.00034287	608.8496063437652	25.66	0.33782	25.66	25.612	25.95	0	1191	118	0.90387505	0.07159734	0.90387505	366.1404	0	29.002563						614	15	5	NaN	NaN	NaN	4.2632E-18	1	16890	16890		177.14	105.06	1	228280			6174	4933	3558	3632	4914	4914					0.08710829745700721
FPNIVIKGSEL	11	Unmodified	_FPNIVIKGSEL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.85043846985	2	608.850438	1215.68632	1.8832	0.0011466	-0.79827	-0.00048603	1.085	0.00066058	608.8499041790529	25.684	0.21716	25.672	25.624	25.841	-0.0116	1191	115	0.90387505	0.06977278	0.9023556	366.1404	0	28.263489						570	10	5	NaN	NaN	NaN	2.2267E-18	1	16217	16217		182.74	119.01	1	224210			6175	4933	3558	3632	4915	4915					0.08710829745700721
FPNKQGYVL	9	Unmodified	_FPNKQGYVL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2900167612501	2	533.290017	1064.56548	1.3887	0.00074056	-1.4151	-0.00075468	-0.026489	-1.4126E-05	533.2894132897605	19.996	0.24065	19.982	19.741	19.982	-0.014141	1251	100	0.8670771	0.06077242	0.8655577	351.7935	0	24.6568						737	11	4	NaN	NaN	NaN	0.011942	1	11078	11078		87.021	39.699	1	204300			6176	3846	3559	3633	4916	4916					0.03578046822894976
FPNNVATVL	9	Unmodified	_FPNNVATVL_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5305578901999	1	974.530558	973.523281	1.8049	0.001759	-1.8125	-0.0017664	-0.0075967	-7.4032E-06	974.5303540792845	26.77	0.21769	26.77	26.674	26.891	0	270	103	1.458913	0.060435534	1.458913	296.31506	0	12.274902						388	10	3	NaN	NaN	NaN	0.036546	1	7706	7706		52.624	13.165	1	63738			6177	3564	3560	3634	4917	4917					0.035460714145074235
FPNNVATVL	9	Unmodified	_FPNNVATVL_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.76891717839993	2	487.768917	973.523281	1.2512	0.0006103	-3.0438	-0.0014847	-1.7926	-0.00087436	487.76770818300463	26.746	0.096535	26.735	26.711	26.808	-0.010645	1329	40	0.81912065	0.02401328	0.8176012	332.7331	0	9.754364						99	5	3	NaN	NaN	NaN	0.27608	1	7560	7560		20.449	2.6497	1	8181.7			6178	3564	3560	3634	4918	4918					0.035460714145074235
FPNNVATVL	9	Unmodified	_FPNNVATVL_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5305578901999	1	974.530558	973.523281	1.4103	0.0013743	-2.9642	-0.0028887	-1.5539	-0.0015143	974.5290945282966	26.794	0.24133	26.783	26.687	26.928	-0.010645	270	109	1.458913	0.06399739	1.4573935	296.31506	0	12.998322						433	11	3	NaN	NaN	NaN	0.042816	1	7561	7561		49.961	17.509	1	66892			6179	3564	3560	3634	4919	4919					0.035460714145074235
FPNRWEYYL	9	Unmodified	_FPNRWEYYL_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-4|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-2|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3114804848501	2	644.31148	1286.60841	1.6335	0.0010525	-1.0698	-0.00068929	0.56365	0.00036316	644.310462755866	26.988	0.1448	26.988	26.964	27.109	0	1119	70	0.9479278	0.04217851	0.9479278	383.74756	0	17.075043						238	7	3	NaN	NaN	NaN	0.37272	1	18541	18541		14.854	2.8053	1	30409			6180	35	3561	3635	4920	4920					-0.023431831196603525
FPNRWEYYL	9	Unmodified	_FPNRWEYYL_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-4|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-2|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3114804848501	2	644.31148	1286.60841	1.691	0.0010896	-0.49984	-0.00032205	1.1912	0.00076751	644.3109508233886	27.035	0.072409	27.025	26.977	27.049	-0.010124	1116	73	0.94976085	0.044005275	0.9482414	384.48962	0	17.814545						125	4	3	NaN	NaN	NaN	0.40649	1	17714	17714		13.463	2.2927	1	14895			6181	35	3561	3635	4921	4921					-0.023431831196603525
FPNSSPGL	8	Unmodified	_FPNSSPGL_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4042947441002	1	818.404295	817.397018	1.7659	0.0014452	-0.9101	-0.00074483	0.85579	0.00070038	818.4029134979827	20.983	0.048069	20.983	20.959	21.007	0	495	43	1.3249949	0.025097966	1.3249949	269.83173	0	5.111145						64	3	2	NaN	NaN	NaN	0.39717	1	4981	4981		36.586	5.0254	1	7662.5			6182	522	3562	3636	4922	4922					-0.018984350907544467
FPNSSPGL	8	Unmodified	_FPNSSPGL_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4042947441002	1	818.404295	817.397018	1.7414	0.0014252	-0.44485	-0.00036407	1.2965	0.0010611	818.4041257973511	20.911	0.14463	20.911	20.766	20.911	0	495	49	1.3249949	0.028686523	1.3249949	269.83173	0	5.8419495						164	7	2	NaN	NaN	NaN	0.35353	1	4982	4982		38.918	16.792	1	16461			6183	522	3562	3636	4923	4923					-0.018984350907544467
FPNSSPGL	8	Unmodified	_FPNSSPGL_					0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	818.4042947441002	1	818.404295	817.397018	1.1391	0.00093222	0.84013	0.00068757	1.9792	0.0016198	818.4048048949284	20.911	0.19266	20.897	20.704	20.897	-0.014086	495	46	1.3249949	0.026889324	1.3234755	269.83173	0	5.475952						143	9	2	NaN	NaN	NaN	0.48912	1	4875	4875		31.675	9.5491	1	14945			6184	522	3562	3636	4924	4924					-0.018984350907544467
FPNSSPGL	8	Unmodified						0	0	0		nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	nc|ENSG00000039068|P12830-2|CDH1	nc|ENSG00000039068|P12830-2|CDH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	818.404295	817.397018	1.2218	0.00099991	0.5847	0.00047852	1.8065	0.0014784	818.4045779641815	20.959	0.09627	20.945	20.945	21.041	-0.014088	492	49	1.3267875	0.028680325	1.325268	270.19678		5.8406982	-0.018974	0.00035423	0.00013659	NaN	36.586	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13404			6185	522	3562	3636							-0.018984350907544467
FPNVATDH	8	Unmodified	_FPNVATDH_					0	0	0			REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4210074408	1	900.421007	899.413731	1.8565	0.0016716	-8.8777	-0.0079937	-7.0212	-0.006322	900.4125104922703	32.442	0.48265	32.442	32.297	32.78	0	366	112	1.4019053	0.06606603	1.4019053	285.0637	0	13.433868						1090	21	4	NaN	NaN	NaN	0.50567	1	6048	6048		30.791	2.1246	1	302790	+		6186	11917	3563	3637	4925	4925					-0.03999934204807687
FPNVATDH	8	Unmodified						0	0	0			REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.421007	899.413731	1.8565	0.0016716	-8.8777	-0.0079937	-7.0212	-0.006322	900.4125104922703	32.442	0.48265	32.442	32.297	32.78	0	366	112	1.4019053	0.06606603	1.4019053	285.0637		13.433868	0.0020997	-0.0001017	-0.00013249	NaN	30.791	1090	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302790	+		6187	11917	3563	3637							-0.03999934204807687
FPNVATDH	8	Unmodified						0	0	0			REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	REV__ENST00000372936.3_1_X:100306358-100306577:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.421007	899.413731	1.5672	0.0014112	-8.6351	-0.0077752	-7.0679	-0.0063641	900.4132933643818	32.441	0.45852	32.438	32.269	32.727	-0.0031052	363	112	1.4036897	0.06606603	1.4021703	285.42654		13.433868	-0.0020997	0.00011675	0.00013249	NaN	30.791	868	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284450	+		6188	11917	3563	3637							-0.03999934204807687
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2922250992001	2	516.292225	1030.5699	1.1076	0.00057183	-2.7491	-0.0014193	-1.6415	-0.00084749	516.2910270033528	31.452	0.19307	31.452	31.38	31.573	0	1296	67	0.8394264	0.040574074	0.8394264	340.7184	0	16.46878						254	9	3	NaN	NaN	NaN	0.070055	1	9813	9813		40.154	4.8573	1	35292			6189	5303	3564	3638	4926	4926					0.05583511245822592
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2922250992001	2	516.292225	1030.5699	0.63648	0.00032861	-1.5751	-0.0008132	-0.93859	-0.00048459	516.291482730943	31.476	0.16892	31.471	31.399	31.568	-0.0044155	1293	58	0.84127116	0.035046935	0.8397517	341.4672	0	14.225372						233	8	3	NaN	NaN	NaN	0.2345	1	9606	9606		23.118	2.1651	1	36106			6190	5303	3564	3638	4927	4927					0.05583511245822592
FPNVEIVTI	9	Unmodified	_FPNVEIVTI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5771737318	1	1031.57717	1030.5699	0.81377	0.00083947	-0.45301	-0.00046731	0.36076	0.00037216	1031.576346817038	31.476	0.2172	31.471	31.375	31.592	-0.0044155	174	79	1.5157272	0.046073437	1.5142077	307.61646	0	9.350616						345	10	4	NaN	NaN	NaN	0.024221	1	9607	9607		66.656	8.2586	1	70916			6191	5303	3564	3638	4928	4928					0.05583511245822592
FPNVEIVTI	9	Unmodified						0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;ENST00000442018.5_2_X:39911364-39913101:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1031.57717	1030.5699	1.1055	0.0011404	-3.5843	-0.0036975	-2.4788	-0.002557	1031.5759746574197	31.477	0.19307	31.477	31.38	31.573	0	177	88	1.5139546	0.051386952	1.5139546	307.25674		10.428986	0.002738	-0.0027405	-0.00012654	NaN	66.656	299	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88749			6192	5303	3564	3638							0.05583511245822592
FPPKDDHTL	9	Unmodified	_FPPKDDHTL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2692813191501	2	535.269281	1068.52401	1.9829	0.0010614	-2.2583	-0.0012088	-0.27541	-0.00014742	535.2681237982277	16.086	0.09593	16.086	16.038	16.134	0	1269	58	0.8560222	0.03501284	0.8560222	347.2918	0	14.204895						148	5	2	NaN	NaN	NaN	0.084037	1	11489	11489		38.131	16.296	1	18534			6193	2724	3565	3639	4929	4929					-0.007511339364327796
FPPKDDHTL	9	Unmodified						0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.269281	1068.52401	1.5797	0.00084555	-1.2098	-0.00064756	0.36988	0.00019798	535.2686237292186	16.347	0.14385	16.334	16.214	16.358	-0.012995	1266	70	0.85786515	0.04237485	0.8563457	348.03952		17.19165	0.12398	0.00054094	0.00016177	NaN	38.131	193	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21521			6194	2724	3565	3639							-0.007511339364327796
FPPPEEFVF	9	Unmodified	_FPPPEEFVF_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.77112551635	2	554.771126	1107.5277	1.1095	0.00061554	-1.6526	-0.00091683	-0.54309	-0.00030129	555.2718235629967	32.73	0.26544	32.727	32.607	32.872	-0.0031052	1266	100	0.85786515	0.060792148	0.8563457	347.88348	0	24.652557						595	12	3	NaN	NaN	NaN	0.17818	1	12794	12794		26.732	7.6132	1	92443			6195	5990	3566	3640	4930	4930					-0.021764641625850345
FPPPEEFVF	9	Unmodified						0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.771126	1107.5277	1.0139	0.00056246	-0.90773	-0.00050358	0.10614	5.8882E-05	554.7703909535161	32.78	0.24132	32.78	32.707	32.949	0	1266	97	0.85786515	0.05894679	0.85786515	347.88348		23.904236	0.026223	0.00041012	0.00075972	NaN	26.732	454	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78535			6196	5990	3566	3640							-0.021764641625850345
FPPVEAWR	8	Unmodified	_FPPVEAWR_					0	0	0			REV__ENSG00000164099|ENST00000296498|PRSS12	REV__ENSG00000164099|ENST00000296498|PRSS12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5203275549001	1	1001.52033	1000.51305	1.4083	0.0014104	5.8528	0.0058617	7.2611	0.0072722	1001.5280108814479	32.177	0.072372	32.177	32.177	32.249	0	222	82	1.4873441	0.04794967	1.4873441	301.97586	0	9.7352295						180	4	3	NaN	NaN	NaN	0.81251	1	8615	8615		7.5404	0.67717	1	12474	+		6197	10319	3567	3641	4931	4931					0.012815084799399301
FPQAEDLYL	9	Unmodified	_FPQAEDLYL_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5357028475999	1	1095.5357	1094.52843	1.7967	0.0019683	0.23918	0.00026203	2.0358	0.0022303	1095.5358472716155	28.894	0.14479	28.894	28.846	28.991	0	90	58	1.5652816	0.033581734	1.5652816	317.42828	0	6.81015						133	7	2	NaN	NaN	NaN	0.56377	1	12602	12602		6.9844	2.5713	1	10742			6198	4834	3568	3642	4932	4932					-0.015056695135399423
FPQDRVFML	9	Unmodified	_FPQDRVFML_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7971516891001	2	576.797152	1151.57975	1.7391	0.0010031	-2.2144	-0.0012773	-0.47534	-0.00027418	576.7965759014315	27.06	0.36195	27.06	26.915	27.277	0	1188	88	0.90571284	0.053325295	0.90571284	367.11404	0	21.61444						700	16	3	NaN	NaN	NaN	0.040769	1	14862	14862		50.831	22.97	1	210520			6199	2037	3569	3643	4933	4933					0.010023759795558362
FPQDRVFML	9	Unmodified	_FPQDRVFML_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7971516891001	2	576.797152	1151.57975	1.3803	0.00079617	-1.4143	-0.00081576	-0.033953	-1.9584E-05	576.7961794059161	27.108	0.36202	27.098	26.929	27.291	-0.010126	1188	85	0.90571284	0.051478148	0.9041934	367.11404	0	20.865753						787	16	3	NaN	NaN	NaN	0.19455	1	14355	14355		25.681	1.1194	1	215020			6200	2037	3569	3643	4934	4934					0.010023759795558362
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(51)L	0	0	1		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7946090001501	2	584.794609	1167.57467	2.316	0.0013544	-2.0035	-0.0011716	0.31248	0.00018273	584.7936865379932	25.057	0.4102	25.057	24.84	25.25	0	1182	97	0.9093879	0.05883217	0.9093879	368.5439	0	23.842712						664	18	2	NaN	NaN	NaN	0.040769	1	15394	15394		50.831	19.155	1	249900			6201	2037	3569	3644	4935	4935		231			-0.002419278830757321
FPQDRVFML	9	Oxidation (M)	_FPQDRVFM(Oxidation (M))L_		FPQDRVFM(1)L		FPQDRVFM(53)L	0	0	1		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7946090001501	2	584.794609	1167.57467	1.9267	0.0011267	-1.2986	-0.00075942	0.62808	0.0003673	584.7939066343133	25.081	0.33778	25.069	24.852	25.189	-0.012011	1182	106	0.9093879	0.06433731	0.90786844	368.54388	0	26.07373						575	15	2	NaN	NaN	NaN	0.03533	1	14862	14862		53.14	32.585	1	222420			6202	2037	3569	3644	4936	4936		231			-0.002419278830757321
FPQEVKDLL	9	Unmodified	_FPQEVKDLL_					0	0	0		ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENSG00000198301|ENST00000356260|SDAD1	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.8029569610001	2	544.802957	1087.59136	1.8983	0.0010342	-0.62959	-0.000343	1.2687	0.00069121	544.8027283759025	25.202	0.31366	25.202	25.081	25.395	0	1245	73	0.87076044	0.044205308	0.87076044	353.19235	0	17.930267						465	14	4	NaN	NaN	NaN	0.01564	1	12291	12291		77.516	32.877	1	167360			6203	5768	3570	3645	4937	4937					0.05106896274514838
FPQEVKDLL	9	Unmodified	_FPQEVKDLL_					0	0	0		ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENSG00000198301|ENST00000356260|SDAD1	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENST00000395710.5_1_4:76871905-76902632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.8029569610001	2	544.802957	1087.59136	1.9701	0.0010733	-1.2922	-0.00070401	0.67787	0.0003693	544.8022721207606	25.226	0.21711	25.214	25.117	25.334	-0.012011	1245	73	0.87076044	0.04420048	0.869241	353.19235	0	17.928345						415	10	3	NaN	NaN	NaN	0.029876	1	11986	11986		59.273	20.355	1	168060			6204	5768	3570	3645	4938	4938					0.05106896274514838
FPQIGELIL	9	Unmodified	_FPQIGELIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3025928202501	2	515.302593	1028.59063	1.1542	0.00059474	-1.8133	-0.0009344	-0.65914	-0.00033965	515.30154883018	35.337	0.16887	35.337	35.289	35.458	0	1278	61	0.85049206	0.03686565	0.85049206	345.21863	0	14.963928						277	8	3	NaN	NaN	NaN	0.036546	1	9729	9729		52.624	10.306	1	64887			6205	4235	3571	3646	4939	4939					0.07748101625475101
FPQIGELIL	9	Unmodified	_FPQIGELIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5979091739	1	1029.59791	1028.59063	1.0073	0.0010371	-0.064902	-6.6823E-05	0.94239	0.00097029	1029.5977279052918	35.337	0.19297	35.337	35.289	35.482	0	183	91	1.510409	0.053172946	1.510409	306.54495	0	10.791718						350	9	4	NaN	NaN	NaN	0.011206	1	9730	9730		89.256	24.706	1	59874			6206	4235	3571	3646	4940	4940					0.07748101625475101
FPQIGELIL	9	Unmodified	_FPQIGELIL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5979091739	1	1029.59791	1028.59063	0.89053	0.00091689	-0.28188	-0.00029023	0.60865	0.00062666	1029.597566730871	35.336	0.14463	35.336	35.287	35.432	-4.5776E-05	180	100	1.5121819	0.05846858	1.5106624	306.90475	0	11.866486						354	7	4	NaN	NaN	NaN	0.013696	1	9532	9532		81.699	31.738	1	64213			6207	4235	3571	3646	4941	4941					0.07748101625475101
FPQIGELIL	9	Unmodified						0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.302593	1028.59063	0.75275	0.0003879	-1.0535	-0.0005429	-0.30079	-0.000155	515.3022955973748	35.336	0.19291	35.336	35.287	35.48	-4.5776E-05	1275	61	0.85233563	0.03686565	0.8508162	345.96695		14.963928	-0.0007062	0.00038676	0.00016207	NaN	52.624	295	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66001			6208	4235	3571	3646							0.07748101625475101
FPQKFIDLL	9	Unmodified	_FPQKFIDLL_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8236924031002	2	560.823692	1119.63283	2.0383	0.0011431	-1.8088	-0.0010144	0.22948	0.0001287	560.8226268082478	29.618	0.38619	29.618	29.474	29.86	0	1209	67	0.892844	0.04046023	0.892844	362.02008	0	16.405334						607	17	5	NaN	NaN	NaN	0.019103	1	13667	13667		73.133	6.4765	1	438150			6209	3934	3572	3647	4942	4942					0.07780077033862653
FPQKFIDLL	9	Unmodified	_FPQKFIDLL_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8236924031002	2	560.823692	1119.63283	1.6524	0.00092671	-1.6671	-0.00093497	-0.014728	-8.2598E-06	560.8228090245209	29.642	0.43429	29.635	29.514	29.948	-0.0070648	1209	130	0.892844	0.07898331	0.8913246	362.02008	0	32.02527						758	19	5	NaN	NaN	NaN	0.010878	1	13269	13269		90.252	37.628	1	443180			6210	3934	3572	3647	4943	4943					0.07780077033862653
FPQKWPDLL	9	Unmodified	_FPQKWPDLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.31349185755	2	572.313492	1142.61243	2.162	0.0012373	-2.5545	-0.001462	-0.39256	-0.00022467	572.3123859169631	28.05	0.26542	28.05	27.977	28.243	0	1209	61	0.892844	0.03678602	0.892844	361.93152	0	14.911896						360	12	4	NaN	NaN	NaN	0.052553	1	14558	14558		45.827	18.53	1	230600			6211	2404	3573	3648	4944	4944					0.04682906374023332
FPQKWPDLL	9	Unmodified	_FPQKWPDLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.31349185755	2	572.313492	1142.61243	1.1987	0.00068602	-1.8617	-0.0010655	-0.66302	-0.00037946	572.3122856406113	28.073	0.28962	28.064	27.968	28.257	-0.0089779	1206	61	0.894683	0.0367741	0.89316356	362.677	0	14.907074						341	13	3	NaN	NaN	NaN	0.04743	1	14077	14077		48.002	17.392	1	241300			6212	2404	3573	3648	4945	4945					0.04682906374023332
FPQLDSTSF	9	Unmodified	_FPQLDSTSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.4887526549999	1	1041.48875	1040.48148	1.495	0.001557	-0.60777	-0.00063298	0.88721	0.00092402	1041.4876859179865	27.374	0.24136	27.374	27.253	27.495	0	225	88	1.4855686	0.051506996	1.4855686	301.4579	0	10.452026						402	11	2	NaN	NaN	NaN	0.090258	1	10222	10222		37.231	8.3353	1	53165			6213	4687	3574	3649	4946	4946					-0.03714529064677663
FPQLDSTSF	9	Unmodified	_FPQLDSTSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.4887526549999	1	1041.48875	1040.48148	1.1407	0.001188	-1.0458	-0.0010892	0.094874	9.881E-05	1041.4875599477552	27.373	0.2896	27.363	27.267	27.556	-0.010126	225	85	1.4855686	0.049728274	1.4840492	301.4579	0	10.091064						439	13	2	NaN	NaN	NaN	0.034172	1	10003	10003		53.652	8.4867	1	53301			6214	4687	3574	3649	4947	4947					-0.03714529064677663
FPQLDVSRL	9	Unmodified	_FPQLDVSRL_					0	0	0		ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.8007486230501	2	537.800749	1073.58694	2.1802	0.0011725	-1.5583	-0.00083808	0.62185	0.00033443	537.7996567643556	25.781	0.12066	25.781	25.757	25.877	0	1212	55	0.8910048	0.03311813	0.8910048	361.4627	0	13.435364						127	6	4	NaN	NaN	NaN	0.045904	1	11727	11727		48.65	12.415	1	19107			6215	4438	3575	3650	4948	4948					0.053094318516286876
FPQLDVSRL	9	Unmodified	_FPQLDVSRL_					0	0	0		ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.8007486230501	2	537.800749	1073.58694	1.8384	0.00098869	4.3966	0.0023645	6.235	0.0033532	537.8001793952822	25.805	0.14483	25.793	25.745	25.89	-0.0116	1206	40	0.894683	0.023907006	0.89316356	362.95486	0	9.698608						147	7	3	NaN	NaN	NaN	0.34922	1	11424	11424		15.822	0.35925	1	20654			6216	4438	3575	3650	4949	4949					0.053094318516286876
FPQMGRFTL	9	Unmodified	_FPQMGRFTL_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7840443138501	2	548.784044	1095.55354	1.838	0.0010087	0.11959	6.5629E-05	1.9576	0.0010743	548.7837239940108	26.239	0.14481	26.239	26.215	26.36	0	1257	100	0.86339295	0.060739636	0.86339295	350.17215	0	24.634583						317	7	2	NaN	NaN	NaN	0.2345	1	12650	12650		23.118	9.6545	1	32092			6217	1432	3576	3651	4950	4950					0.009581068080706245
FPQSYIYEIF	10	Unmodified	_FPQSYIYEIF_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.8213466794	2	653.821347	1305.62814	0.61513	0.00040219	-2.2976	-0.0015022	-1.6824	-0.0011	653.8197303981015	34.371	0.14457	34.37	34.322	34.467	-0.00064468	1101	64	0.95892316	0.038481772	0.9574037	388.1387	0	15.57608						139	7	2	NaN	NaN	NaN	0.47445	1	18031	18031		20.513	2.5436	1	15126			6218	4927	3577	3652	4951	4951					-0.012448518995824998
FPQYPDKEL	9	Unmodified	_FPQYPDKEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.78476420785	2	568.784764	1135.55498	1.1969	0.0006808	-1.2355	-0.00070273	-0.038543	-2.1922E-05	568.7842607529099	20.525	0.28902	20.511	20.391	20.68	-0.014141	1239	61	0.87444305	0.036833763	0.8729236	354.4986	0	14.932373						354	13	2	NaN	NaN	NaN	0.0056438	1	13830	13830		101.27	48.495	1	92045			6219	2445	3578	3653	4952	4952					-0.0073798062219339045
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2782604442001	2	556.27826	1110.54197	1.3977	0.0007775	-1.9943	-0.0011094	-0.59659	-0.00033187	556.277307806872	32.466	0.19302	32.466	32.394	32.587	0	1260	112	0.8615505	0.06814617	0.8615505	349.36633	0	27.63388						748	9	5	NaN	NaN	NaN	0.16171	1	13301	13301		27.789	5.9538	1	206340			6220	1206	3579	3654	4953	4953					-0.008881350059255055
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.5492444218	1	1111.54924	1110.54197	1.7715	0.0019691	-1.0341	-0.0011494	0.73743	0.00081969	1111.549740549109	32.466	0.19302	32.466	32.418	32.611	0	66	100	1.579413	0.058307767	1.579413	320.2365	0	11.822266						509	9	4	NaN	NaN	NaN	0.030696	1	13302	13302		58.2	34.865	1	87576			6221	1206	3579	3654	4954	4954					-0.008881350059255055
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2782604442001	2	556.27826	1110.54197	1.2358	0.00068745	-2.5436	-0.0014149	-1.3078	-0.0007275	556.2769036250716	32.465	0.28959	32.462	32.341	32.631	-0.0031052	1257	100	0.86339295	0.060759306	0.8618735	350.11343	0	24.638428						927	13	5	NaN	NaN	NaN	0.028349	1	12917	12917		61.271	18.954	1	221660			6222	1206	3579	3654	4955	4955					-0.008881350059255055
FPQYVMDVL	9	Unmodified	_FPQYVMDVL_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.5492444218	1	1111.54924	1110.54197	0.84303	0.00093707	-1.5426	-0.0017147	-0.69955	-0.00077759	1111.5490023167079	32.465	0.2172	32.462	32.414	32.631	-0.0031052	66	88	1.579413	0.051223755	1.5778936	320.2365	0	10.385956						469	10	4	NaN	NaN	NaN	0.0084155	1	12919	12919		95.62	53.302	1	78219			6223	1206	3579	3654	4956	4956					-0.008881350059255055
FPQYVMDVL	9	Oxidation (M)	_FPQYVM(Oxidation (M))DVL_		FPQYVM(1)DVL		FPQYVM(61)DVL	0	0	1		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.5441590439	1	1127.54416	1126.53688	2.1682	0.0024448	-1.4911	-0.0016812	0.67718	0.00076355	1127.543211434972	28.798	0.19307	28.798	28.701	28.894	0	72	118	1.5758814	0.068938255	1.5758814	319.46472	0	13.975281						443	9	4	NaN	NaN	NaN	0.028569	1	13959	13959		60.984	36.023	1	63839			6224	1206	3579	3655	4957	4957		131			-0.02132438868557074
FPQYVMDVL	9	Oxidation (M)	_FPQYVM(Oxidation (M))DVL_		FPQYVM(1)DVL		FPQYVM(78)DVL	0	0	1		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1127.5441590439	1	1127.54416	1126.53688	1.0235	0.0011541	-1.5022	-0.0016938	-0.47868	-0.00053973	1127.5429531587404	28.797	0.19304	28.789	28.692	28.885	-0.0083504	69	112	1.5776473	0.065402985	1.5761279	319.82272	0	13.258575						429	9	4	NaN	NaN	NaN	0.015029	1	13516	13516		78.289	40.987	1	52443			6225	1206	3579	3655	4958	4958		131			-0.02132438868557074
FPREPSPPQ	9	Unmodified	_FPREPSPPQ_					0	0	0		ENSG00000182759|ENST00000333480|MAFA	ENSG00000182759|ENST00000333480|MAFA	ENSG00000182759|ENST00000333480|MAFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7694484946501	2	527.769448	1053.52434	1.8819	0.00099321	-7.9623	-0.0042023	-6.0804	-0.003209	528.2648768696426	40.919	0.024021	40.926	40.902	40.926	0.0074959	1245	31	0.87076044	0.018414915	0.869241	353.33524	0	7.472351						32	2	2	NaN	NaN	NaN	0.35794	1	10569	10569		15.463	5.7167	1	2095.1			6226	5280	3580	3656	4959	4959					-0.00027714216571439465
FPRESPVDGAQ	11	Unmodified	_FPRESPVDGAQ_					0	0	0			REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7936518724501	2	601.793652	1201.57275	0.7959	0.00047897	4.3063	0.0025915	5.1022	0.0030705	601.7950640881893	22.187	0.19295	22.173	22.125	22.318	-0.013731	1167	88	0.91857195	0.053233266	0.9170525	372.14285	0	21.566498						403	9	3	NaN	NaN	NaN	0.33431	1	15874	15874		24.4	5.2819	1	48706	+		6227	10217	3581	3657	4960	4960					-0.01997265367322143
FPRGSHLSL	9	Unmodified	_FPRGSHLSL_					0	0	0			REV__nc|ENSG00000142748|O75636-2|FCN3	REV__nc|ENSG00000142748|O75636-2|FCN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.2799833912	2	507.279983	1012.54541	1.0525	0.00053391	-10.966	-0.0055628	-9.9135	-0.0050289	507.2741331795286	20.525	0.16849	20.511	20.391	20.559	-0.014141	1284	55	0.8468043	0.033196986	0.8452849	343.79373	0	13.477631						151	8	2	NaN	NaN	NaN	0.16939	1	8908	8908		27.296	2.896	1	20685	+		6228	9852	3582	3658	4961	4961					0.03964295882940405
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.87322425	3	379.873224	1136.59784	1.7788	0.00067571	-1.4931	-0.00056718	0.2857	0.00010853	379.87254424173153	19.012	0.095945	19.012	18.964	19.06	0	1518	97	0.7023569	0.059505165	0.7023569	427.09323	0	36.184235						200	5	2	NaN	NaN	NaN	0.16171	1	14346	14346		30.035	0	1	27347			6229	2335	3583	3659	4962	4962					0.035008342259061465
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3061981417001	2	569.306198	1136.59784	1.5787	0.00089877	-1.6313	-0.00092868	-0.052544	-2.9914E-05	569.305371827222	19.178	0.3845	19.164	19.044	19.428	-0.014141	1197	100	0.9001988	0.060687065	0.8986794	364.93594	0	24.602234						633	17	2	NaN	NaN	NaN	0.024359	1	13876	13876		66.481	0	1	146370			6230	2335	3583	3659	4963	4963					0.035008342259061465
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000122674|ENST00000325974|CCZ1	ENSG00000122674|ENST00000325974|CCZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.87322425	3	379.873224	1136.59784	1.6499	0.00062674	-0.75522	-0.00028689	0.89463	0.00033985	380.2073817208738	19.178	0.16826	19.164	19.092	19.26	-0.014141	1524	91	0.698637	0.055779994	0.69711757	424.83124	0	33.919037						178	8	2	NaN	NaN	NaN	0.33629	1	13877	13877		14.854	0	1	13350			6231	2335	3583	3659	4964	4964					0.035008342259061465
FPRPQPMEPA	10	Unmodified	_FPRPQPMEPA_					0	0	0			REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2922334867002	2	585.292233	1168.56991	2.8852	0.0016887	-4.2391	-0.0024811	-1.3539	-0.00079243	585.2896141392986	10.972	0.09584	10.972	10.948	11.044	0	1257	37	0.86339295	0.022107422	0.86339295	349.90024	0	8.95929						77	5	2	NaN	NaN	NaN	0.56921	1	15441	15441		16.584	1.1215	1	6167.4	+		6232	9242	3584	3660	4965	4965					-0.007628120258232229
FPRWFVLSYW	10	Unmodified	_FPRWFVLSYW_					0	0	0		ENST00000526451.5_1_11:65765641-65765800:-|nuORF	ENST00000526451.5_1_11:65765641-65765800:-|nuORF	ENST00000526451.5_1_11:65765641-65765800:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.8611405419001	2	700.861141	1399.70773	0.56134	0.00039342	-6.5585	-0.0045966	-5.9971	-0.0042032	701.3580375136561	33.237	0.096539	33.235	33.186	33.283	-0.0024757	1050	55	0.9900381	0.03292221	0.9885187	400.45084	0	13.316376						141	5	3	NaN	NaN	NaN	0.65442	1	19118	19118		11.17	1.5587	1	9082.7			6233	7427	3585	3661	4966	4966					0.023862595650825824
FPSADEIII	9	Unmodified	_FPSADEIII_					0	0	0		KDM7A|p.K140R|1|0.33|ENSG00000006459|chr7:140129633-140129633|T/C|missense_variant;KDM7A|p.E454*|1|0.15|ENSG00000006459|chr7:140111163-140111164|-/A|frameshift_variant;nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A	KDM7A|p.K140R|1|0.33|ENSG00000006459|chr7:140129633-140129633|T/C|missense_variant	KDM7A|p.K140R|1|0.33|ENSG00000006459|chr7:140129633-140129633|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5298891882002	1	1004.52989	1003.52261	1.4674	0.0014741	0.28643	0.00028772	1.7538	0.0017618	1004.5304109802078	30.728	0.41022	30.728	30.535	30.946	0	231	124	1.4820169	0.07278168	1.4820169	300.88202	0	14.776276						692	18	3	NaN	NaN	NaN	0.10956	1	8728	8728		34.439	2.8777	1	86769			6234	346	3586	3662	4967	4967					0.020992319748188493
FPSALGLLL	9	Unmodified	_FPSALGLLL_					0	0	0			REV__ENST00000244040.3_1_20:56884772-56884994:+|nuORF	REV__ENST00000244040.3_1_20:56884772-56884994:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5658807640001	1	930.565881	929.558604	1.9779	0.0018406	6.0556	0.0056352	8.0336	0.0074758	930.572477906819	34.469	0.048244	34.469	34.445	34.493	0	234	37	1.4802408	0.021314383	1.4802408	300.84528	0	4.3319397						49	3	2	NaN	NaN	NaN	0.20577	1	6610	6610		24.961	4.4056	1	3862.5	+		6235	11497	3587	3663	4968	4968					0.09100733942329953
FPSAPDVKA	9	Unmodified	_FPSAPDVKA_					0	0	0		nc|ENSG00000023734|Q9Y3F4-2|STRAP;ENSG00000023734|ENST00000419869|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.24781759555	2	466.247818	930.481082	1.1317	0.00052766	-1.11	-0.00051752	0.021746	1.0139E-05	466.247289963215	18.482	0.24005	18.468	18.348	18.588	-0.01395	1386	58	0.78399014	0.035157204	0.7824707	318.66788	0	14.290314						276	11	3	NaN	NaN	NaN	0.059222	1	6482	6482		42.995	22.546	1	44578			6236	7898	3588	3664	4969	4969					0.013060960061352489
FPSDITEFL	9	Unmodified	_FPSDITEFL_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5248038103	1	1068.5248	1067.51753	1.067	0.0011401	1.0801	0.0011541	2.1471	0.0022942	1068.5265980056247	33.407	0.12067	33.407	33.383	33.504	0	147	61	1.5316714	0.03541863	1.5316714	310.71024	0	7.184906						150	6	2	NaN	NaN	NaN	0.29681	1	11439	11439		19.118	7.0696	1	13790			6237	4244	3589	3665	4970	4970					-0.013530718877973413
FPSEAPISL	9	Unmodified	_FPSEAPISL_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5036744377002	1	960.503674	959.496398	1.2071	0.0011594	3.1034	0.0029808	4.3105	0.0041402	960.5067455229441	27.735	0.14476	27.726	27.653	27.798	-0.009552	267	67	1.4606913	0.039126158	1.4591719	296.7368	0	7.948395						184	7	2	NaN	NaN	NaN	0.10363	1	7178	7178		35.296	9.1815	1	19601			6238	2290	3590	3666	4971	4971					0.015029628033403242
FPSEITDTV	9	Unmodified	_FPSEITDTV_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4884183039999	1	1008.48842	1007.48114	1.6019	0.0016155	-6.3341	-0.0063879	-4.7323	-0.0047724	1008.4833839655838	24.574	0.41002	24.574	24.357	24.767	0	267	112	1.4606913	0.06579256	1.4606913	296.53668	0	13.356628						532	18	2	NaN	NaN	NaN	0.062072	1	8873	8873		41.785	10.223	1	94203			6239	635	3591	3667	4972	4972					-0.022299487845316435
FPSEITDTV	9	Unmodified						0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1008.48842	1007.48114	1.6074	0.001621	-5.4998	-0.0055465	-3.8925	-0.0039255	1008.4826085847196	24.55	0.33772	24.538	24.441	24.779	-0.012394	264	115	1.4624695	0.06757438	1.46095	296.89767		13.718353	-0.018319	0.00035514	0.00012937	NaN	41.785	619	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99645			6240	635	3591	3667							-0.022299487845316435
FPSEVLTIF	9	Unmodified	_FPSEVLTIF_					0	0	0		nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5662746945	1	1052.56627	1051.559	1.9932	0.0020979	7.7829	0.008192	9.776	0.01029	1052.570267315341	34.782	0.26526	34.782	34.686	34.951	0	129	94	1.5422925	0.05483198	1.5422925	312.92535	0	11.125183						341	12	2	NaN	NaN	NaN	0.014046	1	10699	10699		80.639	10.039	1	55866			6241	1842	3592	3668	4973	4973					0.035281088715237274
FPSEVLTIF	9	Unmodified	_FPSEVLTIF_					0	0	0		nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	nc|ENSG00000111877|Q9NXL9-3|MCM9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5662746945	1	1052.56627	1051.559	1.4807	0.0015585	3.3391	0.0035146	4.8198	0.0050731	1053.574665437255	34.781	0.19278	34.78	34.708	34.901	-0.0006485	126	85	1.544062	0.049522996	1.5425426	313.2844	0	10.048035						262	9	3	NaN	NaN	NaN	0.032764	1	10480	10480		55.494	2.7354	1	38802			6242	1842	3592	3668	4974	4974					0.035281088715237274
FPSFGGGK	8	Unmodified	_FPSFGGGK_					0	0	0		MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.3988154357003	1	796.398815	795.391539	1.5988	0.0012733	8.0421	0.0064047	9.6409	0.007678	796.4052876293646	34.831	0.3618	34.831	34.782	35.144	0	513	103	1.3142352	0.06102395	1.3142352	267.76285	0	12.433044						425	16	3	NaN	NaN	NaN	0.57691	1	4692	4692		26.732	2.8811	1	69745			6243	7880	3593	3669	4975	4975					-0.01434113882555721
FPSFGGGK	8	Unmodified	_FPSFGGGK_					0	0	0		MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|33|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.3988154357003	1	796.398815	795.391539	1.5561	0.0012393	8.3313	0.006635	9.8873	0.0078743	796.4055128539255	34.829	0.16875	34.828	34.78	34.949	-0.0006485	510	97	1.316029	0.05742812	1.3145095	268.1283	0	11.700439						383	8	4	NaN	NaN	NaN	0.45125	1	4605	4605		33.698	9.8479	1	63992			6244	7880	3593	3669	4976	4976					-0.01434113882555721
FPSFISDML	9	Unmodified	_FPSFISDML_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.75716086135	2	528.757161	1055.49977	0.74724	0.00039511	-2.1045	-0.0011128	-1.3573	-0.00071766	529.2585503769703	35.289	0.096531	35.289	35.241	35.337	0	1284	31	0.8468043	0.01844281	0.8468043	343.60602	0	7.48349						73	5	3	NaN	NaN	NaN	0.39244	1	10877	10877		14.042	1.9929	1	4366.6			6245	941	3594	3670	4977	4977					-0.025761104143157354
FPSFISDML	9	Unmodified	_FPSFISDML_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75716086135	2	528.757161	1055.49977	0.9438	0.00049904	-3.8473	-0.0020343	-2.9035	-0.0015353	528.7558144828655	35.288	0.072445	35.287	35.263	35.336	-4.5776E-05	1281	34	0.84864825	0.020283759	0.8471288	344.35425	0	8.230499						71	4	3	NaN	NaN	NaN	0.29681	1	10646	10646		19.118	8.5134	1	5048.7			6246	941	3594	3670	4978	4978					-0.025761104143157354
FPSFISDML	9	Oxidation (M)	_FPSFISDM(Oxidation (M))L_		FPSFISDM(1)L		FPSFISDM(59)L	0	0	1		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.7546181724	2	536.754618	1071.49468	0.90051	0.00048335	-1.9504	-0.0010469	-1.0499	-0.00056354	536.7532964340046	30.969	0.19311	30.964	30.867	31.06	-0.0050716	1251	64	0.8670771	0.038694263	0.8655577	351.76443	0	15.697876						233	9	3	NaN	NaN	NaN	0.030391	1	11318	11318		58.599	33.638	1	27393			6247	941	3594	3671	4979	4979		101			-0.03820414276947304
FPSGETIVM	9	Oxidation (M)	_FPSGETIVM(Oxidation (M))_		FPSGETIVM(1)		FPSGETIVM(53)	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4706597498002	1	996.47066	995.463383	1.4718	0.0014667	-0.055514	-5.5318E-05	1.4163	0.0014113	996.4706650655093	22.042	0.38554	22.029	21.836	22.222	-0.013731	294	70	1.4446791	0.040928483	1.4431597	293.33383	0	8.310303						409	17	3	NaN	NaN	NaN	0.036546	1	8234	8234		52.624	24.835	1	47259			6248	1638	3595	3672	4980	4980		185			-0.03452987311004563
FPSGETIVM	9	Oxidation (M)						0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.47066	995.463383	2.0836	0.0020762	-0.97725	-0.0009738	1.1063	0.0011024	996.4688563383224	22.091	0.14468	22.091	21.994	22.139	0	288	70	1.4482387	0.04092419	1.4482387	294.05658		8.309418	0.031135	-0.00057298	0.0025395	NaN	52.624	212	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26109			6249	1638	3595	3672				185			-0.03452987311004563
FPSGIIKVF	9	Unmodified	_FPSGIIKVF_					0	0	0		nc|ENSG00000157107|Q0JRZ9-3|FCHO2;ENSG00000157107|ENST00000430046|FCHO2	nc|ENSG00000157107|Q0JRZ9-3|FCHO2	nc|ENSG00000157107|Q0JRZ9-3|FCHO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.29985316605007	2	504.299853	1006.58515	0.9425	0.0004753	-5.7932	-0.0029215	-4.8507	-0.0024462	504.2968628361401	27.928	0.096558	27.919	27.846	27.943	-0.009552	1302	85	0.8357362	0.051673353	0.8342168	339.32712	0	20.9805						144	5	2	NaN	NaN	NaN	0.19268	1	8682	8682		25.801	9.2168	1	13817			6250	3945	3596	3673	4981	4981					0.08212422833673827
FPSHIVPIL	9	Unmodified	_FPSHIVPIL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.80530268470005	2	511.805303	1021.59605	0.97949	0.00050131	-1.8665	-0.0009553	-0.88704	-0.00045399	511.80390977488696	27.952	0.072388	27.943	27.919	27.991	-0.009552	1296	58	0.8394264	0.035046935	0.83790696	340.75784	0	14.22702						96	4	2	NaN	NaN	NaN	0.55027	1	9255	9255		7.5404	1.45	1	9068.7			6251	3969	3597	3674	4982	4982					0.08611825207947277
FPSIDCPS	8	Unmodified	_FPSIDCPS_					0	0	0			REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.3760310831001	1	865.376031	864.368755	1.302	0.0011267	0.47673	0.00041255	1.7787	0.0015393	865.3754772682637	27.952	0.16892	27.943	27.919	28.088	-0.009552	414	40	1.3733286	0.023234606	1.3718091	279.42343	0	4.727417						92	8	2	NaN	NaN	NaN	0.79379	1	5444	5444		10.052	0	1	5762.3	+		6252	11321	3598	3675	4983	4983					-0.06885501062356525
FPSILTAVL	9	Unmodified	_FPSILTAVL_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5764454503002	1	960.576445	959.569169	1.1905	0.0011436	-1.1686	-0.0011225	0.021952	2.1087E-05	960.5753005155113	36.109	0.36171	36.109	35.868	36.229	0	246	55	1.4731345	0.0319885	1.4731345	299.2643	0	6.4983826						257	16	2	NaN	NaN	NaN	0.030391	1	7335	7335		58.599	14.297	1	31800			6253	4714	3599	3676	4984	4984					0.087767165967648
FPSILTAVL	9	Unmodified	_FPSILTAVL_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5764454503002	1	960.576445	959.569169	1.3936	0.0013386	-3.7308	-0.0035837	-2.3372	-0.0022451	960.5740374749362	36.107	0.19281	36.108	35.988	36.181	0.0011024	243	52	1.4749115	0.030206561	1.473392	299.62527	0	6.1364136						263	9	3	NaN	NaN	NaN	0.074859	1	7186	7186		39.459	9.8604	1	27707			6254	4714	3599	3676	4985	4985					0.087767165967648
FPSIYDVKYLM	11	Unmodified	_FPSIYDVKYLM_					0	0	0		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3519567035501	2	688.351957	1374.68936	1.2751	0.00087772	-3.5534	-0.002446	-2.2783	-0.0015683	688.3493445615358	31.115	0.16898	31.115	31.042	31.211	0	1080	85	0.9717421	0.05124539	0.9717421	393.12042	0	20.731476						480	8	5	NaN	NaN	NaN	0.00018727	1	19853	19853		82.967	51.769	1	74719			6255	3877	3600	3677	4986	4986					0.01700336808198699
FPSIYDVKYLM	11	Unmodified	_FPSIYDVKYLM_					0	0	0		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3519567035501	2	688.351957	1374.68936	1.2329	0.00084865	-2.8427	-0.0019568	-1.6098	-0.0011081	688.350268879816	31.138	0.21721	31.133	31.06	31.277	-0.0050716	1077	85	0.9735726	0.05124539	0.9720532	393.86093	0	20.731476						535	10	4	NaN	NaN	NaN	3.6536E-07	1	18916	18916		91.484	54.253	1	80976			6256	3877	3600	3677	4987	4987					0.01700336808198699
FPSIYDVKYLM	11	Oxidation (M)	_FPSIYDVKYLM(Oxidation (M))_		FPSIYDVKYLM(1)		FPSIYDVKYLM(97)	0	0	1		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3494140146	2	696.349414	1390.68428	1.3913	0.00096882	-0.099414	-6.9227E-05	1.2919	0.00089959	696.3499025314896	27.591	0.12067	27.591	27.543	27.664	0	1062	91	0.9827221	0.05488813	0.9827221	397.51685	0	22.202545						431	6	5	NaN	NaN	NaN	1.9628E-07	1	19991	19991		97.213	58.174	1	93196			6257	3877	3600	3678	4988	4988		423			0.004560329455898682
FPSIYDVKYLM	11	Oxidation (M)	_FPSIYDVKYLM(Oxidation (M))_		FPSIYDVKYLM(1)		FPSIYDVKYLM(97)	0	0	1		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3494140146	2	696.349414	1390.68428	0.88096	0.00061345	-1.1442	-0.00079673	-0.26319	-0.00018327	696.3487495339057	27.615	0.1689	27.605	27.557	27.726	-0.009552	1068	88	0.97906286	0.053061366	0.9775434	396.03668	0	21.463623						523	8	4	NaN	NaN	NaN	1.9628E-07	1	19052	19052		97.213	75.442	1	94087			6258	3877	3600	3678	4989	4989		423			0.004560329455898682
FPSLEVKEL	9	Unmodified	_FPSLEVKEL_					0	0	0		ENST00000606965.5_1_6:158535743-158540110:-|nuORF;ENST00000607742.5_1_6:158532400-158537340:-|nuORF;ENSG00000122335|ENST00000647468|SERAC1	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.29750744235	2	531.297507	1060.58046	1.9416	0.0010316	6.286	0.0033397	8.2276	0.0043713	531.3006998151831	25.129	0.19302	25.129	25.057	25.25	0	1242	76	0.87260187	0.04605466	0.87260187	354.05197	0	18.68634						367	9	4	NaN	NaN	NaN	0.02431	1	11139	11139		66.544	28.413	1	53319			6259	2319	3601	3679	4990	4990					0.05259493900234702
FPSLEVKEL	9	Unmodified	_FPSLEVKEL_					0	0	0		ENST00000606965.5_1_6:158535743-158540110:-|nuORF;ENST00000607742.5_1_6:158532400-158537340:-|nuORF;ENSG00000122335|ENST00000647468|SERAC1	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	ENST00000606965.5_1_6:158535743-158540110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.29750744235	2	531.297507	1060.58046	1.1823	0.00062815	7.5541	0.0040135	8.7364	0.0046416	531.3020259001689	25.153	0.21713	25.141	25.045	25.262	-0.012011	1239	70	0.87444305	0.04236108	0.8729236	354.799	0	17.187714						379	10	4	NaN	NaN	NaN	0.12866	1	10894	10894		31.675	2.7799	1	51898			6260	2319	3601	3679	4991	4991					0.05259493900234702
FPSLIYPLQ	9	Unmodified	_FPSLIYPLQ_					0	0	0		nc|ENSG00000257242|G3V211|LINC01619	nc|ENSG00000257242|G3V211|LINC01619	nc|ENSG00000257242|G3V211|LINC01619	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3025928202501	2	539.302593	1076.59063	0.82445	0.00044463	-1.2019	-0.00064818	-0.37743	-0.00020355	539.3022797705802	35.337	0.12063	35.337	35.313	35.434	0	1227	70	0.88180584	0.042338252	0.88180584	357.71823	0	17.17514						188	6	2	NaN	NaN	NaN	0.17818	1	11842	11842		26.732	1.7706	1	18212			6261	8051	3602	3680	4992	4992					0.0554010162547911
FPSLSLIPL	9	Unmodified	_FPSLSLIPL_					0	0	0		chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1;chr4:70522838-70523868|442|242.15|0.67|8.49|+|0|AMTN,AMTN|1;chr4:70518831-70523868|161|36.57|0.03|10.18|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1	chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5920955145001	1	986.592096	985.584819	1.4576	0.001438	-0.031224	-3.0805E-05	1.4263	0.0014072	986.5920898875414	37.265	0.16846	37.265	37.193	37.362	0	156	85	1.5263584	0.049622893	1.5263584	309.96072	0	10.077026						278	8	3	NaN	NaN	NaN	0.062836	1	8080	8080		41.46	7.7618	1	22578			6262	145	3603	3681	4993	4993					0.09145003113803796
FPSLSLIPL	9	Unmodified	_FPSLSLIPL_					0	0	0		chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1;chr4:70522838-70523868|442|242.15|0.67|8.49|+|0|AMTN,AMTN|1;chr4:70518831-70523868|161|36.57|0.03|10.18|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1	chr4:70523168-70523868|111|30.48|0.04|9.68|+|0|None,AMTN|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5920955145001	1	986.592096	985.584819	1.2324	0.0012158	0.36847	0.00036353	1.6008	0.0015794	986.5921398032316	37.239	0.16862	37.241	37.193	37.361	0.0022507	150	55	1.5299006	0.03188014	1.5283811	310.68005	0	6.4739685						216	8	3	NaN	NaN	NaN	0.032417	1	7910	7910		55.947	11.645	1	17695			6263	145	3603	3681	4994	4994					0.09145003113803796
FPSNLVTEM	9	Unmodified	_FPSNLVTEM_					0	0	0		ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4972088513	1	1037.49721	1036.48993	1.4989	0.0015551	-0.11132	-0.0001155	1.3876	0.0014396	1037.4973545457174	27.109	0.31372	27.109	27.012	27.326	0	198	100	1.5015416	0.058542967	1.5015416	304.71454	0	11.880402						481	14	3	NaN	NaN	NaN	0.019939	1	10058	10058		72.076	36.78	1	70042			6264	3965	3604	3682	4995	4995					-0.02685298419692117
FPSNLVTEM	9	Unmodified	_FPSNLVTEM_					0	0	0		ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.4972088513	1	1037.49721	1036.48993	1.118	0.0011599	-0.98059	-0.0010174	0.13737	0.00014252	1037.4960923332944	27.108	0.28961	27.098	27.001	27.291	-0.010126	195	112	1.5033154	0.06566012	1.501796	305.07452	0	13.3246765						448	13	4	NaN	NaN	NaN	0.017791	1	9844	9844		74.794	19.381	1	57703			6265	3965	3604	3682	4996	4996					-0.02685298419692117
FPSNLVTEM	9	Oxidation (M)	_FPSNLVTEM(Oxidation (M))_		FPSNLVTEM(1)		FPSNLVTEM(46)	0	0	1		ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	ENST00000546352.1_1_17:79244758-79256003:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.4921234734	1	1053.49212	1052.48485	2.5154	0.00265	-1.199	-0.0012632	1.3164	0.0013868	1053.490835763331	22.911	0.28908	22.911	22.814	23.103	0	180	73	1.5121819	0.042556405	1.5121819	306.81256	0	8.63443						406	13	3	NaN	NaN	NaN	0.052553	1	10723	10723		45.827	19.712	1	41978			6266	3965	3604	3683	4997	4997		429			-0.03929602282300948
FPSPDPSGL	9	Unmodified	_FPSPDPSGL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4410741809	1	916.441074	915.433798	1.6044	0.0014703	-0.67361	-0.00061733	0.93076	0.00085298	916.4400017827109	24.164	0.31374	24.164	24.044	24.357	0	405	88	1.3786905	0.051814556	1.3786905	280.2692	0	10.533203						448	14	2	NaN	NaN	NaN	0.0094682	1	6325	6325		93.472	28.922	1	66435			6267	4987	3605	3684	4998	4998					-0.027301832648504387
FPSPDPSGL	9	Unmodified	_FPSPDPSGL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4410741809	1	916.441074	915.433798	1.5762	0.0014445	-1.1075	-0.001015	0.4687	0.00042954	916.4401953128582	24.188	0.28956	24.175	24.031	24.32	-0.012749	405	79	1.3786905	0.04644704	1.377171	280.26923	0	9.442047						475	13	3	NaN	NaN	NaN	0.0062755	1	6206	6206		99.986	19.347	1	59864			6268	4987	3605	3684	4999	4999					-0.027301832648504387
FPSPEWDTV	9	Unmodified	_FPSPEWDTV_					0	0	0		ENST00000523845.5_1_7:44260423-44302632:-|nuORF;nc|ENSG00000058404|Q13554-5|CAMK2B;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000145349|Q13557-11|CAMK2D;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000058404|Q13554-8|CAMK2B;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;nc|ENSG00000145349|Q13557-6|CAMK2D;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000145349|Q13557-9|CAMK2D;ENSG00000070808|ENST00000671881|CAMK2A;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000145349|Q13557-3|CAMK2D;ENSG00000058404|ENST00000395749|CAMK2B	ENST00000523845.5_1_7:44260423-44302632:-|nuORF	ENST00000523845.5_1_7:44260423-44302632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.4887526549999	1	1077.48875	1076.48148	1.7875	0.001926	-0.36068	-0.00038863	1.4268	0.0015374	1077.487773810616	27.446	0.072371	27.436	27.411	27.484	-0.010126	180	49	1.5121819	0.028365016	1.5106624	306.72406	0	5.753418						71	4	2	NaN	NaN	NaN	0.33629	1	11502	11502		16.584	6.9725	1	5562			6269	624	3606	3685	5000	5000					-0.053705290646803405
FPSPEYETF	9	Unmodified	_FPSPEYETF_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.4884183039999	1	1116.48842	1115.48114	2.5711	0.0028706	-3.0127	-0.0033636	-0.44158	-0.00049302	1117.4877506768778	26.167	0.28961	26.167	26.094	26.384	0	117	94	1.5493695	0.054837823	1.5493695	314.1279	0	11.118134						648	13	5	NaN	NaN	NaN	0.04947	1	13481	13481		47.136	22.574	1	68574			6270	1269	3607	3686	5001	5001					-0.07197948784528307
FPSPEYETF	9	Unmodified	_FPSPEYETF_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.4884183039999	1	1116.48842	1115.48114	1.8982	0.0021193	-2.7974	-0.0031232	-0.89915	-0.0010039	1117.4874149057925	26.191	0.28953	26.18	26.083	26.373	-0.011137	114	85	1.5511382	0.04952824	1.5496187	314.4865	0	10.041626						627	13	5	NaN	NaN	NaN	0.032764	1	13094	13094		55.494	25.895	1	64695			6271	1269	3607	3686	5002	5002					-0.07197948784528307
FPSPGPVAL	9	Unmodified	_FPSPGPVAL_					0	0	0		ENST00000571541.5_1_17:7296780-7297150:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7296780-7297150:-|nuORF	ENST00000571541.5_1_17:7296780-7297150:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.4876304430001	1	884.48763	883.480354	1.7457	0.001544	0.6767	0.00059853	2.4223	0.0021425	884.4885175147084	27.012	0.33783	27.012	26.915	27.253	0	387	91	1.389409	0.053592682	1.389409	282.59943	0	10.900513						508	15	2	NaN	NaN	NaN	0.018156	1	5846	5846		74.332	27.196	1	97995			6272	5525	3608	3687	5003	5003					0.0339530135709083
FPSPGPVAL	9	Unmodified	_FPSPGPVAL_					0	0	0		ENST00000571541.5_1_17:7296780-7297150:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7296780-7297150:-|nuORF	ENST00000571541.5_1_17:7296780-7297150:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.4876304430001	1	884.48763	883.480354	1.4239	0.0012595	0.47689	0.0004218	1.9008	0.0016813	884.4886642084933	27.06	0.33789	27.049	26.929	27.267	-0.010126	384	85	1.3911947	0.05001986	1.3896753	282.96265	0	10.173798						592	15	3	NaN	NaN	NaN	0.011118	1	5725	5725		89.521	42.481	1	90978			6273	5525	3608	3687	5004	5004					0.0339530135709083
FPSPVDAAF	9	Unmodified	_FPSPVDAAF_					0	0	0		ENST00000525057.5_1_11:6458881-6461709:-|nuORF;ENSG00000110169|ENST00000265983|HPX	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.461809623	1	950.46181	949.454533	1.9545	0.0018577	-0.59207	-0.00056274	1.3624	0.0012949	950.4609964585625	28.146	0.072382	28.146	28.122	28.194	0	339	85	1.4179583	0.049902916	1.4179583	288.0988	0	10.139221						217	4	3	NaN	NaN	NaN	0.021105	1	7066	7066		70.6	28.815	1	35594			6274	1754	3609	3688	5005	5005					-0.022215928851892386
FPSPVDAAF	9	Unmodified	_FPSPVDAAF_					0	0	0		ENST00000525057.5_1_11:6458881-6461709:-|nuORF;ENSG00000110169|ENST00000265983|HPX	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.461809623	1	950.46181	949.454533	1.1674	0.0011096	-0.83016	-0.00078904	0.33723	0.00032052	950.4605727620134	28.17	0.096577	28.161	28.112	28.209	-0.0089779	336	94	1.419741	0.055252552	1.4182216	288.461	0	11.226135						228	5	3	NaN	NaN	NaN	0.021105	1	6937	6937		70.6	39.039	1	37308			6275	1754	3609	3688	5006	5006					-0.022215928851892386
FPSRNKLFDHL	11	Unmodified	_FPSRNKLFDHL_					0	0	0		ENST00000509626.1_1_5:34954007-34954816:+|nuORF;ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.5823328428667	3	458.582333	1372.72517	1.1435	0.00052441	-0.18196	-8.3443E-05	0.96158	0.00044096	458.9162202612192	19.54	0.28804	19.54	19.42	19.708	0	1395	31	0.7784366	0.018514812	0.7784366	472.38065	0	11.235382						180	13	3	NaN	NaN	NaN	0.62984	1	19831	19831		12.063	6.5253	1	14168			6276	4635	3610	3689	5007	5007					0.053715551001005224
FPSSFEEIEIL	11	Unmodified	_FPSSFEEIEIL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant;PLEC|p.G497Wfs*30|1|0.35|ENSG00000178209|chr8:143934410-143934411|-/G|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.82936867675	2	655.829369	1309.64418	0.9264	0.00060756	-2.2626	-0.0014839	-1.3362	-0.00087633	655.8274873916042	34.203	0.14471	34.203	34.131	34.276	0	1086	103	0.9680805	0.06232065	0.9680805	391.83273	0	25.224426						346	7	3	NaN	NaN	NaN	0.16517	1	18931	18931		52.78	38.831	1	32126			6277	7990	3611	3690	5008	5008					0.0017480954666098114
FPSSFEEIEIL	11	Unmodified	_FPSSFEEIEIL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant;PLEC|p.G497Wfs*30|1|0.35|ENSG00000178209|chr8:143934410-143934411|-/G|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.82936867675	2	655.829369	1309.64418	0.74446	0.00048824	-2.2852	-0.0014987	-1.5407	-0.0010105	655.8274990994591	34.202	0.19307	34.201	34.105	34.298	-0.0012474	1080	112	0.9717421	0.06782317	0.97022265	393.31476	0	27.451569						329	9	3	NaN	NaN	NaN	0.2084	1	18099	18099		40.154	24.691	1	30271			6278	7990	3611	3690	5009	5009					0.0017480954666098114
FPSSLAGETL	10	Unmodified	_FPSSLAGETL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5200527834003	1	1021.52005	1020.51278	2.8643	0.0029259	-2.1172	-0.0021627	0.74712	0.0007632	1021.5184579526208	25.877	0.16891	25.877	25.829	25.998	0	219	70	1.4891195	0.04081571	1.4891195	302.2558	0	8.284607						206	8	2	NaN	NaN	NaN	0.033206	1	9385	9385		58.235	15.918	1	15886			6279	7939	3612	3691	5010	5010					0.0033404396945115877
FPSSLAGETL	10	Unmodified						0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1021.52005	1020.51278	2.4793	0.0025327	-4.3355	-0.0044288	-1.8562	-0.0018961	1021.5161168485796	25.901	0.096565	25.89	25.793	25.89	-0.0116	216	64	1.4908947	0.03726256	1.4893752	302.61612		7.5634155	0.0061523	-0.0012625	0.00012786	NaN	58.235	140	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10044			6280	7939	3612	3691							0.0033404396945115877
FPSSLTSSL	9	Unmodified	_FPSSLTSSL_					0	0	0		nc|ENSG00000204852|Q2MV58-6|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-6|TCTN1	nc|ENSG00000204852|Q2MV58-6|TCTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.4829389956002	1	938.482939	937.475663	1.9673	0.0018462	-0.46617	-0.00043749	1.5011	0.0014088	938.4825313442058	25.877	0.24132	25.877	25.805	26.046	0	321	61	1.4286518	0.03563726	1.4286518	290.3245	0	7.2420654						304	11	3	NaN	NaN	NaN	0.0018626	1	6768	6768		111.43	55.94	1	35729			6281	5908	3613	3692	5011	5011					0.0044237242368581065
FPSSLTSSL	9	Unmodified	_FPSSLTSSL_					0	0	0		nc|ENSG00000204852|Q2MV58-6|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-6|TCTN1	nc|ENSG00000204852|Q2MV58-6|TCTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4829389956002	1	938.482939	937.475663	2.5754	0.0024169	-1.4603	-0.0013705	1.115	0.0010464	938.4815617608389	25.901	0.24136	25.89	25.793	26.034	-0.0116	321	64	1.4286518	0.037417173	1.4271324	290.3245	0	7.6037903						325	11	3	NaN	NaN	NaN	0.01047	1	6627	6627		91.429	47.126	1	37982			6282	5908	3613	3692	5012	5012					0.0044237242368581065
FPSTAEHTL	9	Unmodified	_FPSTAEHTL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.74818173630007	2	501.748182	1001.48181	2.101	0.0010542	-2.0436	-0.0010254	0.057429	2.8815E-05	501.74756185952833	17.525	0.28769	17.525	17.405	17.693	0	1305	85	0.83389086	0.0516845	0.83389086	338.6011	0	20.98648						410	13	2	NaN	NaN	NaN	0.014046	1	8644	8644		80.639	46.94	1	74922			6283	5255	3614	3693	5013	5013					-0.0188710934479559
FPSTAEHTL	9	Unmodified	_FPSTAEHTL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.74818173630007	2	501.748182	1001.48181	1.6739	0.00083988	-1.9193	-0.000963	-0.24538	-0.00012312	501.74763842878747	17.57	0.23998	17.556	17.412	17.652	-0.013567	1308	85	0.83204526	0.051701307	0.8305259	337.8517	0	20.993286						437	11	3	NaN	NaN	NaN	0.043119	1	8475	8475		49.833	13.246	1	70992			6284	5255	3614	3693	5014	5014					-0.0188710934479559
FPSTETATL	9	Unmodified	_FPSTETATL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4778536177001	1	966.477854	965.470577	1.1434	0.0011051	-0.20261	-0.00019581	0.94079	0.00090925	966.4773739153374	22.452	0.21665	22.438	22.246	22.462	-0.013733	294	64	1.4446791	0.037385464	1.4431597	293.45825	0	7.5940857						253	10	2	NaN	NaN	NaN	0.030391	1	7344	7344		58.599	30.81	1	35927			6285	2147	3615	3694	5015	5015					-0.01353931438939071
FPSVSDSLLQV	11	Unmodified	_FPSVSDSLLQV_					0	0	0		ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31;ENST00000491252.5_1_2:74710449-74717828:+|nuORF;ENST00000449459.5_1_2:74710449-74718064:+|nuORF;ENST00000489152.5_1_2:74710222-74717828:+|nuORF;nc|ENSG00000115282|Q49AM3-2|TTC31	ENST00000464241.5_1_2:74710222-74719357:+|nuORF	ENST00000464241.5_1_2:74710222-74719357:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.316428477	2	596.316428	1190.6183	0.59988	0.00035772	0.2391	0.00014258	0.83898	0.0005003	596.3167559804737	30.994	0.14481	30.994	30.922	31.066	0	1236	58	0.876284	0.03498262	0.876284	355.0478	0	14.174042						155	7	2	NaN	NaN	NaN	0.54514	1	16168	16168		16.858	5.688	1	12360			6286	2010	3616	3695	5016	5016					0.03061960095055838
FPSWAMEL	8	Oxidation (M)	_FPSWAM(Oxidation (M))EL_		FPSWAM(1)EL		FPSWAM(59)EL	0	0	1		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4495303772001	1	996.44953	995.442254	1.6882	0.0016822	3.0898	0.0030789	4.7781	0.0047611	996.4519383720973	29.401	0.16899	29.401	29.353	29.522	0	213	85	1.4926696	0.049728274	1.4926696	303.07806	0	10.097046						232	8	2	NaN	NaN	NaN	0.12876	1	8394	8394		58.599	27.808	1	22142			6287	610	3617	3696	5017	5017		62			-0.055649526198862986
FPSWAMEL	8	Oxidation (M)	_FPSWAM(Oxidation (M))EL_		FPSWAM(1)EL		FPSWAM(55)EL	0	0	1		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4495303772001	1	996.44953	995.442254	1.3196	0.0013149	4.3745	0.004359	5.6941	0.0056739	996.4532883894053	29.4	0.19305	29.393	29.32	29.513	-0.0077209	210	91	1.4944444	0.053280234	1.4929249	303.43845	0	10.818268						286	9	3	NaN	NaN	NaN	0.14443	1	8226	8226		55.494	14.034	1	21400			6288	610	3617	3696	5018	5018		62			-0.055649526198862986
FPSWAMELL	9	Unmodified	_FPSWAMELL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1093.5386797355	1	1093.53868	1092.5314	1.9422	0.0021239	-0.049516	-5.4148E-05	1.8927	0.0020697	1093.5387023877238	36.615	0.16865	36.615	36.567	36.736	0	78	88	1.5723488	0.05124557	1.5723488	318.86874	0	10.392487						397	8	3	NaN	NaN	NaN	0.018156	1	12501	12501		74.332	37.745	1	42624			6289	610	3618	3697	5019	5019					-0.011161176603764034
FPSWAMELL	9	Unmodified	_FPSWAMELL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1093.5386797355	1	1093.53868	1092.5314	1.451	0.0015867	0.57055	0.00062392	2.0216	0.0022107	1093.5388784335769	36.613	0.14431	36.615	36.591	36.735	0.0016785	72	79	1.5758814	0.045936942	1.5743619	319.5851	0	9.315918						356	7	3	NaN	NaN	NaN	0.014046	1	12189	12189		80.639	39.179	1	37877			6290	610	3618	3697	5020	5020					-0.011161176603764034
FPSWAMELL	9	Oxidation (M)	_FPSWAM(Oxidation (M))ELL_		FPSWAM(1)ELL		FPSWAM(47)ELL	0	0	1		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.5335943576	1	1109.53359	1108.52632	1.0717	0.0011891	-0.33616	-0.00037298	0.73554	0.00081611	1109.5333331099641	33.6	0.048153	33.6	33.552	33.6	0	108	85	1.5546752	0.04949677	1.5546752	315.22778	0	10.036041						124	3	2	NaN	NaN	NaN	0.04947	1	13225	13225		47.136	19.347	1	21425			6291	610	3618	3698	5021	5021		62			-0.023604215229852343
FPSWAMELL	9	Oxidation (M)	_FPSWAM(Oxidation (M))ELL_		FPSWAM(1)ELL		FPSWAM(71)ELL	0	0	1		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1109.5335943576	1	1109.53359	1108.52632	0.47396	0.00052587	2.2232	0.0024668	2.6972	0.0029926	1109.5369967617514	33.599	0.26546	33.597	33.549	33.814	-0.0018501	105	97	1.5564433	0.056549788	1.5549239	315.5863	0	11.466095						425	12	4	NaN	NaN	NaN	0.021105	1	12848	12848		70.6	31.682	1	56395			6292	610	3618	3698	5022	5022		62			-0.023604215229852343
FPSYVDKNLEL	11	Unmodified	_FPSYVDKNLEL_					0	0	0		nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.842810403	2	662.84281	1323.67107	1.928	0.0012779	-2.834	-0.0018785	-0.90604	-0.00060056	662.8407649616809	25.129	0.26542	25.129	25.033	25.298	0	1101	70	0.95892316	0.042142153	0.95892316	388.0833	0	17.055237						576	12	4	NaN	NaN	NaN	2.0773E-06	1	19150	19150		91.227	45.4	1	136230			6293	3056	3619	3699	5023	5023					0.022179181578621865
FPSYVDKNLEL	11	Unmodified	_FPSYVDKNLEL_					0	0	0		nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.842810403	2	662.84281	1323.67107	2.2329	0.0014801	-2.8892	-0.0019151	-0.65629	-0.00043502	662.8408795954273	25.129	0.21713	25.117	25.045	25.262	-0.012011	1101	70	0.95892316	0.042142153	0.9574037	388.0833	0	17.055237						513	10	3	NaN	NaN	NaN	0.00024842	1	18296	18296		80.24	49.63	1	129960			6294	3056	3619	3699	5024	5024					0.022179181578621865
FPTADLTL	8	Unmodified	_FPTADLTL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4665606499001	1	877.466561	876.459284	1.6891	0.0014821	-0.15671	-0.0001375	1.5324	0.0013446	877.4663704673754	28.653	0.36198	28.653	28.532	28.894	0	369	106	1.4001206	0.06252146	1.4001206	284.8131	0	12.71817						447	16	2	NaN	NaN	NaN	0.050534	1	5755	5755		78.398	31.358	1	63447			6295	8062	3620	3700	5025	5025					0.01611291257574976
FPTADLTL	8	Unmodified	_FPTADLTL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4665606499001	1	877.466561	876.459284	1.068	0.00093715	-0.033049	-2.9E-05	1.035	0.00090815	877.4666202919922	28.652	0.33781	28.644	28.523	28.861	-0.0083485	369	109	1.4001206	0.064311266	1.3986012	284.8131	0	13.082245						525	15	2	NaN	NaN	NaN	0.27293	1	5629	5629		44.247	8.2106	1	71931			6296	8062	3620	3700	5026	5026					0.01611291257574976
FPTAEVLL	8	Unmodified	_FPTAEVLL_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.5029461562002	1	889.502946	888.49567	1.9041	0.0016937	0.89999	0.00080054	2.8041	0.0024943	889.5042107589651	30.27	0.21717	30.27	30.198	30.415	0	345	73	1.4143922	0.04280579	1.4143922	287.656	0	8.7057495						256	10	3	NaN	NaN	NaN	0.028839	1	5921	5921		87.795	34.471	1	27544			6297	4631	3621	3701	5027	5027					0.046961681542939004
FPTAEVLL	8	Unmodified	_FPTAEVLL_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.5029461562002	1	889.502946	888.49567	1.1008	0.00097913	-0.48639	-0.00043265	0.61437	0.00054649	889.5021429636641	30.245	0.1689	30.238	30.166	30.335	-0.0064106	342	64	1.4161754	0.037449002	1.4146559	288.01868	0	7.6163025						247	8	3	NaN	NaN	NaN	0.27293	1	5800	5800		44.247	8.2106	1	27709			6298	4631	3621	3701	5028	5028					0.046961681542939004
FPTAIGMVV	9	Unmodified	_FPTAIGMVV_					0	0	0		ENSG00000136518|ENST00000429709|ACTL6A;ENST00000491202.5_1_3:179280826-179288052:+|nuORF;ACTL6A-ALG3|1|fusion	ENSG00000136518|ENST00000429709|ACTL6A;ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5066513256003	1	934.506651	933.499375	1.4276	0.0013341	-0.99977	-0.00093429	0.42783	0.00039981	934.5052719063931	30.703	0.096527	30.698	30.649	30.746	-0.0057564	315	88	1.4322147	0.051643968	1.4306953	291.0665	0	10.495514						105	5	2	NaN	NaN	NaN	0.094712	1	6548	6548		36.586	12.736	1	8008.8			6299	5;3022	3622	3702	5029	5029					0.029965146565132272
FPTELAFAL	9	Unmodified	_FPTELAFAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5400599440001	1	1008.54006	1007.53278	1.2435	0.0012541	3.4478	0.0034773	4.6913	0.0047314	1008.5436773213291	34.155	0.096458	34.155	34.131	34.228	0	162	70	1.5228153	0.04074657	1.5228153	309.14832	0	8.271973						149	5	2	NaN	NaN	NaN	0.018156	1	8893	8893		74.332	40.634	1	24725			6300	4223	3623	3703	5030	5030					0.029318397000452023
FPTELAFAL	9	Unmodified	_FPTELAFAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5400599440001	1	1008.54006	1007.53278	1.2433	0.0012539	2.7328	0.0027562	3.9761	0.0040101	1008.5432964760324	34.154	0.096581	34.153	34.129	34.225	-0.0012474	159	58	1.5245869	0.033667326	1.5230675	309.50797	0	6.8348083						143	5	2	NaN	NaN	NaN	0.056143	1	8722	8722		44.302	12.741	1	22100			6301	4223	3623	3703	5031	5031					0.029318397000452023
FPTELLLSL	9	Unmodified	_FPTELLLSL_					0	0	0		ENST00000520609.5_1_8:63936629-63951327:-|nuORF;ENSG00000137563|ENST00000260118|GGH	ENST00000520609.5_1_8:63936629-63951327:-|nuORF	ENST00000520609.5_1_8:63936629-63951327:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5975748229	1	1032.59757	1031.5903	1.455	0.0015024	-4.2153	-0.0043527	-2.7603	-0.0028503	1032.5927642561821	36.589	0.072311	36.591	36.543	36.615	0.0016747	117	67	1.5493695	0.038906813	1.54785	314.44006	0	7.895996						115	4	2	NaN	NaN	NaN	0.31737	1	9655	9655		17.799	2.3363	1	10432			6302	3093	3624	3704	5032	5032					0.07576681905629812
FPTIGDVHL	9	Unmodified	_FPTIGDVHL_					0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.76891717840005	2	499.768917	997.523281	1.4519	0.0007256	-2.3363	-0.0011676	-0.8844	-0.00044199	499.76772379921755	26.843	0.19348	26.843	26.77	26.964	0	1290	70	0.84311575	0.042443633	0.84311575	342.36526	0	17.235168						233	9	3	NaN	NaN	NaN	0.018156	1	8482	8482		74.332	40.634	1	44124			6303	3374	3625	3705	5033	5033					0.024420714145321654
FPTIGDVHL	9	Unmodified	_FPTIGDVHL_					0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.76891717840005	2	499.768917	997.523281	0.92517	0.00046237	-2.5475	-0.0012732	-1.6223	-0.00081078	499.76720376665287	26.866	0.21721	26.856	26.759	26.976	-0.010645	1290	67	0.84311575	0.040587306	0.8415963	342.36526	0	16.481354						275	10	4	NaN	NaN	NaN	0.025843	1	8305	8305		64.55	20.248	1	42839			6304	3374	3625	3705	5034	5034					0.024420714145321654
FPTISLEF	8	Unmodified	_FPTISLEF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4978607783002	1	953.497861	952.490584	1.0213	0.00097377	0.22255	0.0002122	1.2438	0.001186	953.4981933479115	33.721	0.21721	33.721	33.648	33.866	0	294	88	1.4446791	0.051633	1.4446791	293.5145	0	10.490234						482	10	4	NaN	NaN	NaN	0.040055	1	7152	7152		82.858	6.5947	1	89469			6305	894	3626	3706	5035	5035					0.012438642916777098
FPTISLEF	8	Unmodified	_FPTISLEF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4978607783002	1	953.497861	952.490584	0.93886	0.0008952	0.3043	0.00029015	1.2432	0.0011854	953.497955366319	33.72	0.19308	33.718	33.645	33.839	-0.0018463	288	88	1.4482387	0.051627517	1.4467193	294.2377	0	10.489105						467	9	4	NaN	NaN	NaN	0.002556	1	7010	7010		121.78	7.175	1	86088			6306	894	3626	3706	5036	5036					0.012438642916777098
FPTLDSRPRH	10	Unmodified	_FPTLDSRPRH_					0	0	0		ENST00000511437.5_3_5:10227625-10227700:-|nuORF	ENST00000511437.5_3_5:10227625-10227700:-|nuORF	ENST00000511437.5_3_5:10227625-10227700:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.2193945071	3	409.219395	1224.63635	1.7659	0.00072263	2.8221	0.0011549	4.588	0.0018775	409.55455340872413	16.251	0.21581	16.238	16.118	16.334	-0.012995	1470	37	0.7320868	0.02227813	0.73056734	444.78845	0	13.535309						185	10	4	NaN	NaN	NaN	0.7344	1	16413	16413		5.6972	3.2361	1	21908			6307	7357	3627	3707	5037	5037					0.03302139860420539
FPTLEITL	8	Unmodified	_FPTLEITL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.5291609067	1	933.529161	932.521884	1.487	0.0013881	0.061524	5.7434E-05	1.5485	0.0014456	933.5291259746773	33.528	0.386	33.528	33.456	33.842	0	261	169	1.4642475	0.099721074	1.4642475	297.581	0	20.26648						1251	17	5	NaN	NaN	NaN	0.0092318	1	6669	6669		114.61	38.344	1	497160			6308	5310	3628	3708	5038	5038					0.05292437325749688
FPTLEITL	8	Unmodified	_FPTLEITL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.5291609067	1	933.529161	932.521884	1.3039	0.0012172	0.34776	0.00032464	1.6516	0.0015418	933.5292360012218	33.527	0.28956	33.525	33.452	33.742	-0.0018501	261	169	1.4642475	0.099721074	1.462728	297.581	0	20.26648						1163	13	4	NaN	NaN	NaN	1.6025E-16	1	6528	6528		159.73	45.119	1	447480			6309	5310	3628	3708	5039	5039					0.05292437325749688
FPTPDPAAL	9	Unmodified	_FPTPDPAAL_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4774596871999	1	928.47746	927.470183	2.1399	0.0019869	-0.89297	-0.0008291	1.2469	0.0011578	928.4765137571018	26.505	0.19308	26.505	26.408	26.601	0	345	82	1.4143922	0.048159122	1.4143922	287.47162	0	9.788208						303	9	3	NaN	NaN	NaN	0.025843	1	6539	6539		64.55	30.852	1	34614			6310	1240;323	3629	3709	5040	5040					0.003546936318457483
FPTPDPAAL	9	Unmodified	_FPTPDPAAL_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4774596871999	1	928.47746	927.470183	1.0126	0.00094015	-0.76293	-0.00070837	0.24964	0.00023179	928.4771858393558	26.504	0.1689	26.494	26.421	26.59	-0.010645	342	82	1.4161754	0.048159122	1.4146559	287.83405	0	9.788208						290	8	3	NaN	NaN	NaN	0.021105	1	6412	6412		70.6	37.731	1	32773			6311	1240;323	3629	3709	5041	5041					0.003546936318457483
FPTPEAVL	8	Unmodified	_FPTPEAVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4716460278001	1	873.471646	872.46437	1.6357	0.0014287	-3.4522	-0.0030154	-1.8165	-0.0015867	873.4697242851645	27.929	0.14478	27.929	27.857	28.001	0	378	88	1.3947657	0.051809072	1.3947657	283.7439	0	10.539764						295	7	3	NaN	NaN	NaN	0.028839	1	5700	5700		87.795	37.762	1	30505			6312	1712	3630	3710	5042	5042					0.023035951202018623
FPTPEAVL	8	Unmodified	_FPTPEAVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4716460278001	1	873.471646	872.46437	0.7724	0.00067467	-1.8104	-0.0015813	-1.038	-0.00090667	873.4708401165744	27.928	0.14479	27.919	27.87	28.015	-0.009552	375	79	1.3965509	0.046432137	1.3950315	284.10706	0	9.445923						287	7	3	NaN	NaN	NaN	0.09307	1	5564	5564		65.672	15.639	1	28663			6313	1712	3630	3710	5043	5043					0.023035951202018623
FPTPGVVF	8	Unmodified	_FPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.4661667194001	1	863.466167	862.45889	2.0252	0.0017487	-1.0561	-0.00091193	0.96903	0.00083672	863.4652765924767	29.932	0.19304	29.932	29.86	30.053	0	378	55	1.3947657	0.032141924	1.3947657	283.79495	0	6.539978						209	9	2	NaN	NaN	NaN	0.09307	1	5561	5561		65.672	32.535	1	21382			6314	5840	3631	3711	5044	5044					0.022159163283845373
FPTPGVVF	8	Unmodified	_FPTPGVVF_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.4661667194001	1	863.466167	862.45889	0.99995	0.00086342	-0.47399	-0.00040927	0.52596	0.00045415	863.4654812789976	29.931	0.19303	29.925	29.852	30.045	-0.0064087	378	46	1.3947657	0.026780725	1.3932463	283.79495	0	5.4490967						177	9	3	NaN	NaN	NaN	0.23746	1	5424	5424		47.04	15.479	1	18271			6315	5840	3631	3711	5045	5045					0.022159163283845373
FPTSGPPFL	9	Unmodified	_FPTSGPPFL_					0	0	0			REV__ENSG00000011478|ENST00000012049|QPCTL	REV__ENSG00000011478|ENST00000012049|QPCTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.7527357979499	2	481.752736	961.490919	1.9	0.00091535	-1.9199	-0.00092492	-0.019864	-9.5694E-06	481.7515426669376	17.309	0.095835	17.309	17.237	17.333	0	1335	52	0.8154261	0.031412125	0.8154261	331.29007	0	12.762054						97	5	2	NaN	NaN	NaN	0.078597	1	7370	7370		38.918	0	1	12287	+		6316	8408	3632	3712	5046	5046					0.008632840115069484
FPTSKYTG	8	Unmodified	_FPTSKYTG_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4461595588	1	900.44616	899.438883	2.1063	0.0018966	-1.7483	-0.0015743	0.35794	0.0003223	900.4437928368721	51.972	0.047928	51.972	51.948	51.996	0	414	28	1.3733286	0.016087174	1.3733286	279.25278	0	3.2711792						40	3	2	NaN	NaN	NaN	0.83211	1	6052	6052		4.9097	0.49665	1	2339.5			6317	2085	3633	3713	5047	5047					-0.014858794022416077
FPTVQHQEL	9	Unmodified	_FPTVQHQEL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7825558699001	2	549.782556	1097.55056	1.8178	0.00099939	-1.5035	-0.00082661	0.31428	0.00017279	549.7820224040448	18.964	0.11998	18.964	18.94	19.06	0	1245	97	0.87076044	0.05891496	0.87076044	353.15228	0	23.893982						461	6	4	NaN	NaN	NaN	0.0050453	1	12749	12749		102.5	60.178	1	102470			6318	2147	3634	3714	5048	5048					0.005685549549070856
FPTVQHQEL	9	Unmodified	_FPTVQHQEL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7825558699001	2	549.782556	1097.55056	1.7165	0.00094369	1.3876	0.00076289	3.1041	0.0017066	549.7835874326428	19.01	0.21627	18.996	18.972	19.188	-0.014059	1245	112	0.87076044	0.06810933	0.869241	353.15225	0	27.622925						460	10	3	NaN	NaN	NaN	0.015447	1	12415	12415		77.761	27.446	1	116540			6319	2147	3634	3714	5049	5049					0.005685549549070856
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(50)	0	0	1		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7910036787	2	542.791004	1083.56745	1.9291	0.0010471	-2.1252	-0.0011536	-0.19616	-0.00010647	542.789617439733	30.149	0.14479	30.149	30.101	30.246	0	1260	76	0.8615505	0.046044707	0.8615505	349.47293	0	18.677216						346	7	4	NaN	NaN	NaN	0.042649	1	12127	12127		50.033	16.334	1	86868			6320	5779	3635	3715	5050	5050		592			0.029013395164838585
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(130)	0	0	1		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5747308907999	1	1084.57473	1083.56745	2.2295	0.0024181	-1.0947	-0.0011873	1.1348	0.0012308	1084.5731113978431	30.149	0.19305	30.149	30.101	30.294	0	93	148	1.5635144	0.08666992	1.5635144	317.10983	0	17.578278						711	9	5	NaN	NaN	NaN	2.5768E-06	1	12128	12128		128.85	69.402	1	245140			6321	5779	3635	3715	5051	5051		592			0.029013395164838585
FPTVVIYVM	9	Oxidation (M)	_FPTVVIYVM(Oxidation (M))_		FPTVVIYVM(1)		FPTVVIYVM(120)	0	0	1		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.5747308907999	1	1084.57473	1083.56745	1.4557	0.0015788	-1.0779	-0.001169	0.37786	0.00040982	1084.5736036040764	30.124	0.19305	30.118	30.07	30.263	-0.0064106	90	160	1.5652816	0.09378481	1.5637622	317.4683	0	19.021301						634	9	5	NaN	NaN	NaN	0.00011853	1	11820	11820		121.78	74.742	1	236910			6322	5779	3635	3715	5052	5052		592			0.029013395164838585
FPTVVIYVM	9	Unmodified	_FPTVVIYVM_					0	0	0		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5798162687	1	1068.57982	1067.57254	1.2758	0.0013633	-4.5378	-0.004849	-3.262	-0.0034857	1068.5750177654238	34.371	0.26509	34.37	34.274	34.539	-0.00064468	81	118	1.5705823	0.06894565	1.5690628	318.6034	0	13.986084						842	12	5	NaN	NaN	NaN	0.084037	1	11188	11188		52.758	19.06	1	205060			6323	5779	3635	3716	5053	5053					0.041456433790926894
FPTWPELGL	9	Unmodified	_FPTWPELGL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.27911772395	2	530.279118	1058.54368	1.4298	0.0007582	-2.7444	-0.0014553	-1.3146	-0.00069712	530.2776722404641	34.734	0.14471	34.734	34.662	34.806	0	1269	43	0.8560222	0.025803149	0.8560222	347.3335	0	10.469696						111	7	2	NaN	NaN	NaN	0.49672	1	11028	11028		9.746	2.8828	1	11851			6324	851	3636	3717	5054	5054					0.016752420743159746
FPTWPELGL	9	Unmodified	_FPTWPELGL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.27911772395	2	530.279118	1058.54368	0.98984	0.00052489	-3.5459	-0.0018803	-2.556	-0.0013554	530.27664486406	34.757	0.072262	34.756	34.732	34.804	-0.0006485	1272	46	0.854179	0.027650714	0.8526596	346.58563	0	11.21936						69	4	2	NaN	NaN	NaN	0.47587	1	10790	10790		10.605	5.4161	1	9003.1			6325	851	3636	3717	5055	5055					0.016752420743159746
FPVAEDISL	9	Unmodified	_FPVAEDISL_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.514239124	1	990.514239	989.506963	1.603	0.0015878	-0.95219	-0.00094316	0.65084	0.00064467	990.5130412967541	28.966	0.26547	28.958	28.886	29.151	-0.0077229	246	115	1.4731345	0.0675385	1.4716152	299.1361	0	13.714447						722	12	4	NaN	NaN	NaN	0.043119	1	8024	8024		49.833	21.166	1	124980			6326	1225	3637	3718	5056	5056					0.011789454577638026
FPVAEDISL	9	Unmodified						0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	990.514239	989.506963	2.1389	0.0021186	-1.8071	-0.0017899	0.33181	0.00032866	990.5123336568455	28.967	0.26548	28.967	28.894	29.16	0	249	100	1.4713576	0.058654904	1.4713576	298.77527		11.910553	0.0042463	-0.0004077	-0.0001288	NaN	49.833	609	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114030			6327	1225	3637	3718							0.011789454577638026
FPVAEDISLL	10	Unmodified	_FPVAEDISLL_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5983031044	1	1103.5983	1102.59103	1.3569	0.0014975	0.18059	0.0001993	1.5375	0.0016968	1103.5983362442946	32.78	0.19301	32.78	32.707	32.9	0	84	94	1.5688156	0.05478549	1.5688156	318.11597	0	11.109131						446	9	3	NaN	NaN	NaN	0.17937	1	12957	12957		37.302	11.187	1	43296			6328	1225	3638	3719	5057	5057					0.043834765546762355
FPVAEDISLL	10	Unmodified	_FPVAEDISLL_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5983031044	1	1103.5983	1102.59103	1.2406	0.0013691	-0.63134	-0.00069674	0.60926	0.00067238	1103.5969256950393	32.779	0.1689	32.776	32.703	32.872	-0.0031052	87	97	1.5670487	0.056549788	1.5655292	317.7577	0	11.466858						386	8	3	NaN	NaN	NaN	0.2358	1	12618	12618		32.453	14.654	1	37190			6329	1225	3638	3719	5058	5058					0.043834765546762355
FPVAVGFTL	9	Unmodified	_FPVAVGFTL_					0	0	0		ENSG00000133195|ENST00000255559|SLC39A11;nc|ENSG00000133195|Q8N1S5|SLC39A11;ENST00000582179.5_1_17:70943804-71084903:-|nuORF	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.5345806356003	1	950.534581	949.527304	0.81843	0.00077795	-0.04888	-4.6462E-05	0.76955	0.00073149	950.5347190966315	33.334	0.14477	33.331	33.235	33.379	-0.0024757	288	64	1.4482387	0.03736162	1.4467193	294.2508	0	7.5910645						184	7	3	NaN	NaN	NaN	0.020004	1	6952	6952		71.993	24.953	1	18335			6330	2816	3639	3720	5059	5059					0.05052160908246606
FPVEDVFTL	9	Unmodified	_FPVEDVFTL_					0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4;ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5455392524	1	1066.54554	1065.53826	1.0533	0.0011234	-0.34503	-0.000368	0.70824	0.00075537	1066.5458230775953	33.817	0.12064	33.817	33.793	33.914	0	69	97	1.5776473	0.056555748	1.5776473	320.04434	0	11.473022						192	6	2	NaN	NaN	NaN	0.025843	1	11367	11367		64.55	20.248	1	19040			6331	923	3640	3721	5060	5060					0.008115184918551677
FPVEDVFTL	9	Unmodified	_FPVEDVFTL_					0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4;ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5455392524	1	1066.54554	1065.53826	1.2016	0.0012816	1.9415	0.0020707	3.1432	0.0033523	1066.5463282572316	33.938	0.26547	33.938	33.866	34.131	0	144	118	1.533442	0.068982124	1.533442	311.07678	0	13.993835						485	12	4	NaN	NaN	NaN	0.021105	1	11369	11369		70.6	31.141	1	52956			6332	923	3640	3721	5061	5061					0.008115184918551677
FPVEDVFTL	9	Unmodified	_FPVEDVFTL_					0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4;ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5455392524	1	1066.54554	1065.53826	0.76078	0.0008114	1.1866	0.0012655	1.9474	0.0020769	1066.5469324323913	33.937	0.14475	33.936	33.863	34.008	-0.0012474	141	73	1.5352125	0.042484283	1.5336931	311.43594	0	8.618439						225	7	2	NaN	NaN	NaN	0.025843	1	11106	11106		64.55	27.963	1	41780			6333	923	3640	3721	5062	5062					0.008115184918551677
FPVEFLIQV	9	Unmodified	_FPVEFLIQV_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.31041785235	2	546.310418	1090.60628	1.3656	0.00074607	-2.4391	-0.0013325	-1.0734	-0.00058643	546.3090614540262	36.131	0.19283	36.132	36.084	36.277	0.0011024	1209	46	0.892844	0.02759397	0.8913246	362.13724	0	11.192108						165	9	3	NaN	NaN	NaN	0.46713	1	12125	12125		16.584	7.6222	1	17104			6334	5329	3641	3722	5063	5063					0.06460388142522788
FPVEHVQLL	9	Unmodified	_FPVEHVQLL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.3056668254501	2	541.305667	1080.59678	2.2104	0.0011965	-1.4311	-0.00077466	0.77926	0.00042182	541.305199865502	25.491	0.19297	25.491	25.419	25.612	0	1242	70	0.87260187	0.042338252	0.87260187	353.96793	0	17.174347						449	9	4	NaN	NaN	NaN	0.0092442	1	12027	12027		93.929	55.011	1	140010			6335	1692	3642	3723	5064	5064					0.059706198569983826
FPVEHVQLL	9	Unmodified	_FPVEHVQLL_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.3056668254501	2	541.305667	1080.59678	2.1223	0.0011488	-1.3107	-0.00070947	0.81163	0.00043934	541.3049899918453	25.515	0.24129	25.503	25.431	25.672	-0.0116	1245	61	0.87076044	0.036825776	0.869241	353.22095	0	14.938263						539	11	4	NaN	NaN	NaN	0.21451	1	11708	11708		24.4	6.6199	1	148070			6336	1692	3642	3723	5065	5065					0.059706198569983826
FPVEITRRDDL	11	Unmodified	_FPVEITRRDDL_					0	0	0		ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8646084776001	2	680.864608	1359.71466	1.3285	0.0009045	-0.61425	-0.00041822	0.71421	0.00048628	680.8639886884206	20.549	0.096207	20.549	20.501	20.597	0	1077	37	0.9735726	0.021967113	0.9735726	393.9041	0	8.887817						69	5	2	NaN	NaN	NaN	0.69656	1	19678	19678		7.6826	0	1	6285.1			6337	5060	3643	3724	5066	5066					0.04919527654988087
FPVEITRRDDL	11	Unmodified						0	0	0		ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	680.864608	1359.71466	1.5904	0.0010828	-2.8842	-0.0019637	-1.2938	-0.00088093	680.8606317749329	20.598	0.072271	20.584	20.559	20.632	-0.014088	1080	25	0.9717421	0.014644682	0.97022265	393.1635		5.9252014	0.017163	-0.0020301	-0.001675	NaN	7.6826	70	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4626.9			6338	5060	3643	3724							0.04919527654988087
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.28440006709997	2	509.2844	1016.55425	1.7254	0.00087874	-1.0317	-0.00052543	0.69374	0.00035331	509.28351648769143	29.256	0.33781	29.256	29.112	29.449	0	1257	85	0.86339295	0.051606297	0.86339295	350.50995	0	20.9505						457	15	3	NaN	NaN	NaN	0.14301	1	9247	9247		29.598	1.8095	1	80714			6339	1249	3644	3725	5067	5067					0.04663224728756177
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5615236676	1	1017.56152	1016.55425	2.594	0.0026396	-1.1652	-0.0011857	1.4289	0.0014539	1017.5609758905495	29.232	0.38615	29.232	29.112	29.498	0	195	136	1.5033154	0.07984841	1.5033154	305.15308	0	16.20816						1010	17	4	NaN	NaN	NaN	0.0084155	1	9248	9248		95.62	42.995	1	424880			6340	1249	3644	3725	5068	5068					0.04663224728756177
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.28440006709997	2	509.2844	1016.55425	1.0987	0.00055955	-0.93458	-0.00047597	0.16412	8.3585E-05	509.28366742172807	29.256	0.26548	29.248	29.127	29.393	-0.0077229	1254	94	0.8652351	0.057132483	0.86371565	351.2578	0	23.19397						551	12	4	NaN	NaN	NaN	0.04947	1	9070	9070		47.136	7.677	1	111660			6341	1249	3644	3725	5069	5069					0.04663224728756177
FPVEVNTVL	9	Unmodified	_FPVEVNTVL_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.5615236676	1	1017.56152	1016.55425	2.0636	0.0020998	-1.0765	-0.0010954	0.98714	0.0010045	1017.5603823972739	29.231	0.41025	29.224	29.103	29.513	-0.0077209	192	136	1.5050892	0.07985687	1.5035697	305.51312	0	16.20987						959	18	4	NaN	NaN	NaN	0.021751	1	9071	9071		69.782	14.289	1	384670			6342	1249	3644	3725	5070	5070					0.04663224728756177
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5971808924002	1	1006.59718	1005.5899	1.0449	0.0010518	-2.7166	-0.0027345	-1.6717	-0.0016828	1006.5943942361002	37.578	0.24079	37.578	37.434	37.675	0	183	61	1.510409	0.03545618	1.510409	306.6377	0	7.198181						301	11	3	NaN	NaN	NaN	0.034898	1	8823	8823		53.324	9.0768	1	31309			6343	7185	3645	3726	5071	5071					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.80222867950005	2	503.802229	1005.5899	1.3854	0.00069799	-1.1879	-0.00059847	0.19753	9.9517E-05	503.8016778695717	36.808	0.12033	36.808	36.76	36.88	0	1284	34	0.8468043	0.020285964	0.8468043	343.82556	0	8.236633						106	6	3	NaN	NaN	NaN	0.22308	1	8824	8824		23.85	1.7241	1	8650.1			6344	7185	3645	3726	5072	5072					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5971808924002	1	1006.59718	1005.5899	2.0697	0.0020833	-1.8561	-0.0018683	0.21362	0.00021503	1006.5953263081432	36.808	0.2646	36.808	36.736	37	0	177	181	1.5139546	0.10647035	1.5139546	307.3575	0	21.615204						1060	12	5	NaN	NaN	NaN	0.029744	1	8825	8825		59.445	6.1215	1	696620			6345	7185	3645	3726	5073	5073					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5971808924002	1	1006.59718	1005.5899	1.3114	0.0013201	-3.169	-0.0031899	-1.8576	-0.0018699	1006.5938040755819	37.6	0.24072	37.603	37.386	37.627	0.0028267	180	67	1.5121819	0.03899765	1.5106624	306.99765	0	7.917145						247	11	2	NaN	NaN	NaN	0.042649	1	8655	8655		50.033	8.5725	1	30439			6346	7185	3645	3726	5074	5074					0.08733306976421318
FPVFATVIL	9	Unmodified	_FPVFATVIL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5971808924002	1	1006.59718	1005.5899	2.0826	0.0020964	-2.0257	-0.002039	0.056948	5.7324E-05	1006.5951470837684	36.806	0.21642	36.807	36.759	36.976	0.0016785	174	166	1.5157272	0.09756148	1.5142077	307.71738	0	19.80658						946	10	5	NaN	NaN	NaN	0.029744	1	8657	8657		59.445	3.4978	1	621500			6347	7185	3645	3726	5075	5075					0.08733306976421318
FPVFSLVL	8	Unmodified	_FPVFSLVL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A;nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.5444170404002	1	921.544417	920.537141	0.78375	0.00072226	0.5339	0.00049201	1.3176	0.0012143	921.5446731498589	38.275	0.096069	38.275	38.227	38.324	0	264	55	1.4624695	0.03200555	1.4624695	297.27594	0	6.5057373						117	5	2	NaN	NaN	NaN	0.54545	1	6422	6422		28.667	2.9147	1	8277.3			6348	596;4474	3646	3727	5076	5076					0.07369348913618978
FPVFSLVL	8	Unmodified	_FPVFSLVL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A;nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5444170404002	1	921.544417	920.537141	2.1381	0.0019703	1.1952	0.0011014	3.3333	0.0030718	921.5451632186154	38.153	0.072155	38.156	38.108	38.18	0.0034256	279	37	1.4535767	0.021348357	1.4520572	295.4683	0	4.3394775						53	4	2	NaN	NaN	NaN	0.40747	1	6299	6299		36.036	5.4262	1	3033.9			6349	596;4474	3646	3727	5077	5077					0.07369348913618978
FPVGRVHRLL	10	Unmodified	_FPVGRVHRLL_					0	0	0		ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;nc|ENSG00000246705|Q9BTM1-2|H2AJ	ENSG00000276368|ENST00000333151|H2AC14	ENSG00000276368|ENST00000333151|H2AC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.58037509656674	3	398.580375	1192.7193	1.8898	0.00075323	-1.5571	-0.00062061	0.33272	0.00013262	398.5799299139222	18.484	0.1678	18.484	18.388	18.556	0	1434	37	0.75435036	0.022251546	0.75435036	458.45142	0	13.523193						140	8	2	NaN	NaN	NaN	0.72095	1	16239	16239		6.6174	2	1	19757			6350	5199	3647	3728	5078	5078					0.13064501379085414
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5396660135001	1	934.539666	933.53239	1.5464	0.0014452	1.5219	0.0014223	3.0683	0.0028675	934.5413095969499	32.683	0.21716	32.683	32.635	32.852	0	327	163	1.425088	0.09608805	1.425088	289.61798	0	19.527802						643	10	4	NaN	NaN	NaN	0.024982	1	6697	6697		65.676	21.429	1	102500			6351	3566	3648	3729	5079	5079					0.06296464770844068
FPVGVFVVA	9	Unmodified	_FPVGVFVVA_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5396660135001	1	934.539666	933.53239	1.3614	0.0012723	0.37694	0.00035227	1.7383	0.0016245	934.5399661020084	32.682	0.26546	32.679	32.583	32.848	-0.0031052	324	91	1.42687	0.053450346	1.4253505	289.98013	0	10.86261						531	12	3	NaN	NaN	NaN	0.033463	1	6553	6553		54.579	21.442	1	97450			6352	3566	3648	3729	5080	5080					0.06296464770844068
FPVIETSTL	9	Unmodified	_FPVIETSTL_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5455392524001	1	1006.54554	1005.53826	2.0533	0.0020668	-3.4845	-0.0035073	-1.4311	-0.0014405	1006.5417228988007	27.953	0.21715	27.953	27.929	28.146	0	216	115	1.4908947	0.06747401	1.4908947	302.67618	0	13.698364						553	10	3	NaN	NaN	NaN	0.012648	1	8807	8807		84.879	22.902	1	113170			6353	1658	3649	3730	5081	5081					0.03571518491855841
FPVIETSTL	9	Unmodified	_FPVIETSTL_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5455392524001	1	1006.54554	1005.53826	1.4677	0.0014773	-3.7208	-0.0037451	-2.2531	-0.0022678	1006.541432501208	27.977	0.24131	27.968	27.919	28.161	-0.0089798	213	133	1.4926696	0.07811129	1.4911501	303.03653	0	15.857849						615	11	3	NaN	NaN	NaN	0.0072287	1	8639	8639		98.041	48.208	1	117320			6354	1658	3649	3730	5082	5082					0.03571518491855841
FPVLAEKQP	9	Unmodified	_FPVLAEKQP_					0	0	0			REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7923922747001	2	514.792392	1027.57023	1.7792	0.0009159	0.18414	9.4794E-05	1.9633	0.0010107	514.793032128455	36.808	0.096298	36.808	36.784	36.88	0	1287	34	0.8449601	0.020285964	0.8449601	342.9777	0	8.234253						61	5	3	NaN	NaN	NaN	0.35794	1	9689	9689		15.463	2.4598	1	4570.5	+		6355	8210	3650	3731	5083	5083					0.057549309656678815
FPVLAEKQP	9	Unmodified						0	0	0			REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|1|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.792392	1027.57023	1.7792	0.0009159	0.18414	9.4794E-05	1.9633	0.0010107	514.793032128455	36.808	0.096298	36.808	36.784	36.88	0	1287	34	0.8449601	0.020285964	0.8449601	342.9777		8.234253	-0.011818	0.001204	-0.00016237	NaN	15.463	61	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4570.5	+		6356	8210	3650	3731							0.057549309656678815
FPVLDANDL	9	Unmodified	_FPVLDANDL_					0	0	0		ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.5094880971	1	1003.50949	1002.50221	1.904	0.0019106	3.4375	0.0034496	5.3415	0.0053602	1003.5090117838158	29.353	0.36199	29.353	29.208	29.57	0	195	139	1.5033154	0.081679225	1.5033154	305.2103	0	16.582886						935	16	3	NaN	NaN	NaN	5.995099999999999E-26	1	8695	8695		172.73	39.392	1	242270			6357	1038	3651	3732	5084	5084					0.0010606131498889226
FPVLDANDL	9	Unmodified	_FPVLDANDL_					0	0	0		ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.5094880971	1	1003.50949	1002.50221	1.6931	0.0016991	3.2374	0.0032488	4.9305	0.0049479	1003.5097100642571	29.352	0.31365	29.344	29.248	29.562	-0.0077209	195	139	1.5033154	0.08167052	1.501796	305.2103	0	16.581146						896	14	3	NaN	NaN	NaN	0.012495	1	8521	8521		85.344	27.145	1	239470			6358	1038	3651	3732	5085	5085					0.0010606131498889226
FPVLGLVL	8	Unmodified	_FPVLGLVL_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.5495024183	1	857.549502	856.542226	-0.53366	-0.00045764	-5.4939	-0.0047113	-6.0275	-0.0051689	857.5430798331336	57.547	0.047977	57.546	57.546	57.594	-0.00051117	264	73	1.4624695	0.042678475	1.46095	297.60303	0	8.684814						121	3	3	NaN	NaN	NaN	0.84651	1	5362	5362		1.6704	0	1	15894	+		6359	9595	3652	3733	5086	5086					0.108216527762238
FPVLGLVL	8	Unmodified						0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.549502	856.542226	-0.53366	-0.00045764	-5.4939	-0.0047113	-6.0275	-0.0051689	857.5430798331336	57.547	0.047977	57.546	57.546	57.594	-0.00051117	264	73	1.4624695	0.042678475	1.46095	297.60303		8.684814	-0.0014165	0.0014061	-0.0016487	NaN	1.6704	121	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15894	+		6360	9595	3652	3733							0.108216527762238
FPVLQMFF	8	Unmodified	_FPVLQMFF_					0	0	0		tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.76733161715	2	514.767332	1027.52011	2.1167	0.0010896	-11.026	-0.0056757	-8.9089	-0.004586	514.7615093724754	16.302	0.12001	16.302	16.254	16.374	0	1281	25	0.84864825	0.014751017	0.84864825	344.47504	0	5.9875793						73	6	2	NaN	NaN	NaN	0.76633	1	9664	9664		13.737	0.274	1	5114.6			6361	13870	3653	3734	5087	5087					0.007451050361396483
FPVLQMFF	8	Unmodified						0	0	0		tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.767332	1027.52011	1.9831	0.0010208	-11.179	-0.0057545	-9.1957	-0.0047336	514.7612490589194	16.275	0.14385	16.262	16.214	16.358	-0.012993	1284	34	0.8468043	0.020283759	0.8452849	343.72653		8.233368	-0.019986	-5.8209E-05	-0.0016817	NaN	13.737	97	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7241.6			6362	13870	3653	3734							0.007451050361396483
FPVNKDVTL	9	Unmodified	_FPVNKDVTL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7898495857501	2	516.78985	1031.56515	1.7843	0.00092212	-2.1594	-0.001116	-0.37507	-0.00019383	516.7885185196608	21.031	0.36115	21.031	20.887	21.248	0	1266	67	0.85786515	0.0405609	0.85786515	348.19818	0	16.463257						450	16	3	NaN	NaN	NaN	0.077759	1	9857	9857		39.039	15.705	1	94053			6363	5788	3654	3735	5088	5088					0.05062627103052364
FPVNKDVTL	9	Unmodified	_FPVNKDVTL_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7898495857501	2	516.78985	1031.56515	1.1002	0.00056855	-1.2575	-0.00064987	-0.15736	-8.1323E-05	516.7893480337294	21.007	0.36111	20.993	20.897	21.258	-0.014086	1263	58	0.85970795	0.03502047	0.8581885	348.94614	0	14.2144165						442	16	3	NaN	NaN	NaN	0.097143	1	9649	9649		36.235	2.8095	1	90243			6364	5788	3654	3735	5089	5089					0.05062627103052364
FPVNQLFDML	10	Unmodified	_FPVNQLFDML_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.3100918888501	2	612.310092	1222.60563	0.43127	0.00026407	-3.1663	-0.0019387	-2.735	-0.0016747	612.3086220928795	37.626	0.24071	37.626	37.53	37.771	0	1149	73	0.92958635	0.044066966	0.92958635	376.53162	0	17.849457						427	11	4	NaN	NaN	NaN	0.47601	1	17042	17042		20.449	9.8437	1	48997			6365	3461	3655	3736	5090	5090					0.003232254311797078
FPVNQLFDML	10	Unmodified	_FPVNQLFDML_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.3100918888501	2	612.310092	1222.60563	0.72214	0.00044218	-2.991	-0.0018314	-2.2688	-0.0013892	612.3089745347667	37.648	0.26468	37.651	37.53	37.795	0.0028229	1146	70	0.93142134	0.04221946	0.9299019	377.2749	0	17.101135						334	12	3	NaN	NaN	NaN	0.013201	1	16349	16349		67.154	44.068	1	43416			6366	3461	3655	3736	5091	5091					0.003232254311797078
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(55)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.3075491999001	2	620.307549	1238.60055	0.80316	0.00049821	-5.9581	-0.0036958	-5.1549	-0.0031976	620.3040800645982	33.504	0.28948	33.504	33.383	33.673	0	1155	91	0.92591566	0.05508375	0.92591566	374.99072	0	22.308624						627	13	5	NaN	NaN	NaN	0.040041	1	17491	17491		55.413	27.552	1	119920			6367	3461	3655	3737	5092	5092		389			-0.009210784314518605
FPVNQLFDML	10	Oxidation (M)	_FPVNQLFDM(Oxidation (M))L_		FPVNQLFDM(1)L		FPVNQLFDM(50)L	0	0	1		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.3075491999001	2	620.307549	1238.60055	0.32043	0.00019877	-4.7359	-0.0029377	-4.4154	-0.0027389	620.3045869343082	33.502	0.24135	33.501	33.38	33.621	-0.0018463	1155	91	0.92591566	0.05507189	0.9243962	374.99072	0	22.303833						549	11	4	NaN	NaN	NaN	0.068403	1	16757	16757		50.315	28.544	1	109130			6368	3461	3655	3737	5093	5093		389			-0.009210784314518605
FPVPGSGLVL	10	Unmodified	_FPVPGSGLVL_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5716944234001	1	985.571694	984.564418	1.1335	0.0011171	-1.0399	-0.0010249	0.093554	9.2204E-05	985.5711824328238	32.103	0.36198	32.099	31.954	32.316	-0.0037575	249	67	1.4713576	0.03909707	1.4698381	298.79587	0	7.939636						384	16	2	NaN	NaN	NaN	0.37681	1	7874	7874		24.562	11.559	1	60197			6369	336	3656	3738	5094	5094					0.07151832453996576
FPVPPPGAQG	10	Unmodified	_FPVPPPGAQG_					0	0	0		nc|ENSG00000100294|Q8IVS2-2|MCAT;ENSG00000100294|ENST00000290429|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.75580980315004	2	483.75581	965.497067	1.4294	0.00069146	2.4107	0.0011662	3.8401	0.0018577	483.7567702959167	30.534	0.16888	30.529	30.432	30.601	-0.0057545	1323	46	0.8228144	0.027701616	0.82129496	334.2722	0	11.253906						161	8	3	NaN	NaN	NaN	0.40641	1	7353	7353		23.334	1.2081	1	15336			6370	1217	3657	3739	5095	5095					0.012938022430489582
FPVPPPGAQG	10	Unmodified						0	0	0		nc|ENSG00000100294|Q8IVS2-2|MCAT;ENSG00000100294|ENST00000290429|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	483.75581	965.497067	1.5067	0.00072888	1.4067	0.0006805	2.9134	0.0014094	483.7559817350007	30.511	0.14478	30.511	30.439	30.584	0	1323	43	0.8228144	0.025853395	0.8228144	334.2722		10.503082	-0.0087031	-0.00060251	0.00075972	NaN	23.334	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13580			6371	1217	3657	3739							0.012938022430489582
FPVPSICEFL	10	Unmodified	_FPVPSICEFL_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.5316991611333	3	384.531699	1150.57327	1.5301	0.00058839	4.2641	0.0016397	5.7943	0.0022281	384.53348901577317	23.73	0.14456	23.73	23.682	23.827	0	1494	37	0.7172283	0.022297442	0.7172283	436.0729	0	13.556793						104	7	2	NaN	NaN	NaN	0.62764	1	14834	14834		7.1304	0	1	11337			6372	3720	3658	3740	5096	5096					0.004004380281457998
FPVRDGKIKL	10	Unmodified	_FPVRDGKIKL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.8611405419001	2	586.861141	1171.70773	2.0284	0.0011904	-1.9657	-0.0011536	0.062708	3.6801E-05	586.8600930502911	17.237	0.2158	17.237	17.141	17.357	0	1164	46	0.9204082	0.027540386	0.9204082	372.9947	0	11.160706						250	10	3	NaN	NaN	NaN	0.25358	1	15551	15551		30.925	3.6289	1	34087			6373	2129	3659	3741	5097	5097					0.1287425956509196
FPVRDGKIKL	10	Unmodified	_FPVRDGKIKL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.5765191834667	3	391.576519	1171.70773	2.024	0.00079256	-1.7082	-0.0006689	0.3158	0.00012366	391.57610461977606	17.213	0.31183	17.213	17.117	17.429	0	1413	64	0.7673241	0.038916945	0.7673241	466.43158	0	23.656342						654	14	5	NaN	NaN	NaN	0.20007	1	15552	15552		24.67	5.0782	1	376270			6374	2129	3659	3741	5098	5098					0.1287425956509196
FPVRDGKIKL	10	Unmodified	_FPVRDGKIKL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.8611405419001	2	586.861141	1171.70773	1.707	0.0010018	-1.2273	-0.00072023	0.47979	0.00028157	586.8600788850076	17.666	0.35969	17.652	17.484	17.844	-0.013786	1164	49	0.9204082	0.029377997	0.91888875	372.9947	0	11.9053955						308	16	2	NaN	NaN	NaN	0.05475	1	15004	15004		52.195	25.148	1	33883			6375	2129	3659	3741	5099	5099					0.1287425956509196
FPVRDGVVL	9	Unmodified	_FPVRDGVVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44799906-44801193:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.29255945020003	2	501.292559	1000.57057	2.3446	0.0011753	-1.9086	-0.00095678	0.436	0.00021856	501.2917834313261	22.983	0.26495	22.983	22.863	23.128	0	1308	61	0.83204526	0.036905527	0.83204526	337.85587	0	14.985657						456	12	4	NaN	NaN	NaN	0.03618	1	8629	8629		52.78	19.081	1	231460			6376	2325	3660	3742	5100	5100					0.07030350685522535
FPVRDGVVL	9	Unmodified	_FPVRDGVVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44799906-44801193:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.29255945020003	2	501.292559	1000.57057	1.8227	0.00091372	-1.5483	-0.00077617	0.27438	0.00013755	501.29219419314717	23.031	0.45811	23.017	22.873	23.331	-0.013294	1308	64	0.83204526	0.03874868	0.8305259	337.85587	0	15.73407						612	20	4	NaN	NaN	NaN	0.032689	1	8462	8462		55.592	19.555	1	265580			6377	2325	3660	3742	5101	5101					0.07030350685522535
FPVRLSVYL	9	Unmodified	_FPVRLSVYL_					0	0	0		ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3238595786001	2	547.32386	1092.63317	1.4399	0.00078811	-3.2065	-0.001755	-1.7665	-0.00096686	547.3220360513441	28.508	0.024132	28.508	28.484	28.508	0	1233	40	0.87812483	0.023927689	0.87812483	356.1589	0	9.704834						62	2	3	NaN	NaN	NaN	0.23499	1	12516	12516		23.086	6.5017	1	6902.7			6378	4442	3661	3743	5102	5102					0.09055496753717307
FPVRLSVYL	9	Unmodified						0	0	0		ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.32386	1092.63317	1.2888	0.00070539	-1.9884	-0.0010883	-0.69956	-0.00038289	547.8246415022013	28.532	0.12063	28.523	28.499	28.62	-0.0083485	1233	73	0.87812483	0.04417187	0.8766054	356.1589		17.91568	0.0075275	0.00080466	-0.00075972	NaN	23.086	118	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8107.5			6379	4442	3661	3743							0.09055496753717307
FPVSDGSNYF	10	Unmodified	_FPVSDGSNYF_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.4945663144	1	1132.49457	1131.48729	2.7345	0.0030969	-0.754	-0.0008539	1.9805	0.002243	1132.4947454866578	26.336	0.31372	26.336	26.119	26.432	0	93	76	1.5635144	0.04419589	1.5635144	316.9409	0	8.958954						587	14	3	NaN	NaN	NaN	0.0051451	1	14125	14125		104.2	66.896	1	71034			6380	2397	3662	3744	5103	5103					-0.07319430553002348
FPVSDGSNYF	10	Unmodified	_FPVSDGSNYF_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.4945663144	1	1132.49457	1131.48729	1.4559	0.0016487	0.61396	0.0006953	2.0698	0.002344	1132.4952476505864	26.384	0.41019	26.373	26.107	26.517	-0.011137	93	85	1.5635144	0.049502015	1.5619949	316.94086	0	10.034576						687	18	2	NaN	NaN	NaN	0.00015927	1	13672	13672		136.74	83.957	1	108920			6381	2397	3662	3744	5104	5104					-0.07319430553002348
FPVSDWLF	8	Unmodified	_FPVSDWLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4981951293	1	1010.4982	1009.49092	1.6734	0.001691	-0.61182	-0.00061825	1.0616	0.0010728	1010.498222603414	36.254	0.33759	36.254	36.109	36.446	0	219	121	1.4891195	0.07102525	1.4891195	302.29977	0	14.418549						758	15	3	NaN	NaN	NaN	0.023541	1	8952	8952		93.32	56.734	1	106670			6382	955	3663	3745	5105	5105					-0.013447159884890425
FPVSDWLF	8	Unmodified	_FPVSDWLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4981951293	1	1010.4982	1009.49092	1.9014	0.0019214	-0.52561	-0.00053113	1.3758	0.0013903	1010.4974262930821	36.252	0.40957	36.253	36.108	36.518	0.0011024	216	112	1.4908947	0.06568098	1.4893752	302.66016	0	13.333618						803	18	4	NaN	NaN	NaN	0.023541	1	8783	8783		93.32	51.86	1	103440			6383	955	3663	3745	5106	5106					-0.013447159884890425
FPVSIPAVL	9	Unmodified	_FPVSIPAVL_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5658807640001	1	942.565881	941.558604	1.0005	0.00094303	0.74234	0.00069971	1.7428	0.0016427	942.5665316414126	33.552	0.21708	33.552	33.48	33.697	0	303	115	1.4393384	0.06765342	1.4393384	292.4778	0	13.7473755						539	10	3	NaN	NaN	NaN	0.011687	1	6860	6860		87.795	40.754	1	107930			6384	3733	3664	3746	5107	5107					0.0854873394232527
FPVSIPAVL	9	Unmodified	_FPVSIPAVL_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5658807640001	1	942.565881	941.558604	1.0146	0.00095635	-0.39575	-0.00037302	0.61888	0.00058333	942.5655071000324	33.551	0.19304	33.549	33.476	33.67	-0.0018463	300	109	1.4411188	0.064106345	1.4395994	292.83963	0	13.026611						543	9	4	NaN	NaN	NaN	0.013314	1	6724	6724		82.858	35.818	1	99294			6385	3733	3664	3746	5108	5108					0.0854873394232527
FPVSKLELI	9	Unmodified	_FPVSKLELI_					0	0	0		nc|ENSG00000173258|Q8TF39-2|ZNF483;ENSG00000173258|ENST00000309235|ZNF483	nc|ENSG00000173258|Q8TF39-2|ZNF483	nc|ENSG00000173258|Q8TF39-2|ZNF483	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.3182428844501	2	523.318243	1044.62193	1.0784	0.00056433	-1.5091	-0.00078973	-0.43071	-0.0002254	523.317307044065	29.014	0.19306	29.007	28.862	29.055	-0.0077209	1203	61	0.8965218	0.03678602	0.89500237	363.82858	0	14.928589						183	9	2	NaN	NaN	NaN	0.31471	1	10211	10211		17.97	0.17071	1	25683			6386	4882	3665	3747	5109	5109					0.10140674659578508
FPVSKTLVL	9	Unmodified	_FPVSKTLVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.3129605413	2	502.312961	1002.61137	1.4871	0.00074698	-3.4294	-0.0017226	-1.9423	-0.00097564	502.3112355003728	24.574	0.28942	24.574	24.502	24.791	0	1281	52	0.84864825	0.031347692	0.84864825	344.5881	0	12.728516						298	13	2	NaN	NaN	NaN	0.10206	1	8710	8710		35.523	8.2267	1	54725			6387	902	3666	3748	5110	5110					0.11016692005136974
FPVSKTLVL	9	Unmodified	_FPVSKTLVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.3129605413	2	502.312961	1002.61137	1.1502	0.00057778	-2.6747	-0.0013435	-1.5244	-0.00076574	502.311464655493	24.598	0.26524	24.586	24.514	24.779	-0.012394	1281	64	0.84864825	0.0387277	0.8471288	344.58807	0	15.725128						299	12	2	NaN	NaN	NaN	0.19455	1	8533	8533		25.681	9.8595	1	54909			6388	902	3666	3748	5111	5111					0.11016692005136974
FPVSSLGVL	9	Unmodified	_FPVSSLGVL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.5294952577002	1	918.529495	917.522219	1.2499	0.0011481	-0.92345	-0.00084822	0.32643	0.00029983	918.5282451622722	30.607	0.19303	30.601	30.505	30.698	-0.0057545	324	43	1.42687	0.024946213	1.4253505	290.05368	0	5.071045						122	9	2	NaN	NaN	NaN	0.18779	1	6245	6245		26.115	10.94	1	7771.6			6389	2764	3667	3749	5112	5112					0.06015857045622397
FPVSYNDKF	9	Unmodified	_FPVSYNDKF_					0	0	0		ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;ENSG00000121579|ENST00000240922|NAA50	ENST00000467022.1_1_3:113442441-113464796:-|nuORF	ENST00000467022.1_1_3:113442441-113464796:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7716568326	2	558.771657	1115.52876	1.6773	0.0009372	-1.675	-0.00093595	0.0022442	1.254E-06	558.7708874769916	21.633	0.33735	21.633	21.464	21.802	0	1224	76	0.883646	0.046029747	0.883646	358.3066	0	18.664429						463	15	3	NaN	NaN	NaN	0.022185	1	13493	13493		69.233	39.197	1	59501			6390	2297	3668	3750	5113	5113					-0.024382497936812797
FPVSYNDKF	9	Unmodified	_FPVSYNDKF_					0	0	0		ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;ENSG00000121579|ENST00000240922|NAA50	ENST00000467022.1_1_3:113442441-113464796:-|nuORF	ENST00000467022.1_1_3:113442441-113464796:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7716568326	2	558.771657	1115.52876	1.5159	0.00084704	-1.9273	-0.0010769	-0.41144	-0.0002299	558.7711802877596	21.633	0.21673	21.619	21.499	21.715	-0.013895	1221	76	0.885486	0.0460248	0.88396657	359.0527	0	18.662445						465	10	4	NaN	NaN	NaN	0.032409	1	13102	13102		55.958	29.843	1	56663			6391	2297	3668	3750	5114	5114					-0.024382497936812797
FPVVEASWSML	11	Oxidation (M)	_FPVVEASWSM(Oxidation (M))L_		FPVVEASWSM(1)L		FPVVEASWSM(58)L	0	0	1		ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.31283154305	2	641.312832	1280.61111	1.5273	0.00097946	-3.6733	-0.0023557	-2.146	-0.0013763	641.8122508276812	31.21	0.28955	31.205	31.109	31.398	-0.0050716	1116	70	0.94976085	0.04216945	0.9482414	384.50876	0	17.072205						338	13	3	NaN	NaN	NaN	0.027044	1	17612	17612		58.235	41.651	1	32454			6392	2187	3669	3751	5115	5115		253			-0.017970957770330642
FPVVLLETM	9	Unmodified	_FPVVLLETM_					0	0	0		ENST00000560357.5_1_8:28821384-28828064:+|nuORF;nc|ENSG00000147421|Q6NT76-4|HMBOX1;nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5747308908	1	1048.57473	1047.56745	1.8564	0.0019466	-0.24988	-0.00026201	1.6065	0.0016846	1048.5748127378515	34.324	0.09639	34.324	34.3	34.396	0	126	82	1.544062	0.047777057	1.544062	313.29987	0	9.694275						164	5	2	NaN	NaN	NaN	0.042649	1	10540	10540		50.033	30.869	1	25821			6393	3595	3670	3752	5116	5116					0.045573395165092734
FPVVLLETM	9	Unmodified	_FPVVLLETM_					0	0	0		ENST00000560357.5_1_8:28821384-28828064:+|nuORF;nc|ENSG00000147421|Q6NT76-4|HMBOX1;nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5747308908	1	1048.57473	1047.56745	1.3076	0.0013711	1.0712	0.0011233	2.3788	0.0024943	1048.57616606932	34.323	0.12042	34.322	34.274	34.394	-0.0012474	123	82	1.5458313	0.047766924	1.5443119	313.65887	0	9.69223						180	6	2	NaN	NaN	NaN	0.024986	1	10326	10326		65.672	24.212	1	25935			6394	3595	3670	3752	5117	5117					0.045573395165092734
FPVVLLETM	9	Oxidation (M)	_FPVVLLETM(Oxidation (M))_		FPVVLLETM(1)		FPVVLLETM(56)	0	0	1		ENST00000560357.5_1_8:28821384-28828064:+|nuORF;nc|ENSG00000147421|Q6NT76-4|HMBOX1;nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	ENST00000560357.5_1_8:28821384-28828064:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5696455129	1	1064.56965	1063.56237	1.5314	0.0016303	-1.7236	-0.0018349	-0.19216	-0.00020456	1064.5687739105315	30.608	0.16893	30.608	30.56	30.728	0	129	91	1.5422925	0.053088427	1.5422925	312.87964	0	10.769897						347	8	3	NaN	NaN	NaN	0.032417	1	11291	11291		55.947	32.83	1	40250			6395	3595	3670	3753	5118	5118		405			0.03313035653877705
FPWDEYKL	8	Unmodified	_FPWDEYKL_					0	0	0		SPATA6-FAF1|1|fusion;nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1	SPATA6-FAF1|1|fusion	SPATA6-FAF1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2687500029	2	549.26875	1096.52295	1.2378	0.00067989	-0.3539	-0.00019438	0.88391	0.0004855	549.2680447402553	27.639	0.12063	27.639	27.567	27.688	0	1257	37	0.86339295	0.022107422	0.86339295	350.1683	0	8.966156						117	6	3	NaN	NaN	NaN	0.65644	1	12683	12683		21.771	5.1869	1	16291			6396	5392	3671	3754	5119	5119					-0.02145348305339212
FPWDEYKL	8	Unmodified	_FPWDEYKL_					0	0	0		SPATA6-FAF1|1|fusion;nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1	SPATA6-FAF1|1|fusion	SPATA6-FAF1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2687500029	2	549.26875	1096.52295	1.0598	0.0005821	-0.010401	-5.713E-06	1.0494	0.00057639	549.2683699595822	27.639	0.09651	27.629	27.581	27.677	-0.009552	1257	58	0.86339295	0.03499776	0.8618735	350.1683	0	14.194122						110	5	2	NaN	NaN	NaN	0.79607	1	12351	12351		9.746	0.62279	1	17573			6397	5392	3671	3754	5120	5120					-0.02145348305339212
FPWDIDEAL	9	Unmodified	_FPWDIDEAL_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.5200527834	1	1105.52005	1104.51278	1.3315	0.001472	0.31882	0.00035246	1.6504	0.0018245	1105.5207300109785	33.962	0.28959	33.962	33.866	34.155	0	120	109	1.5476005	0.06373322	1.5476005	313.80734	0	12.923187						906	13	3	NaN	NaN	NaN	0.0023856	1	13029	13029		109.86	70.399	1	171770			6398	1391	3672	3755	5121	5121					-0.03529956030570247
FPWDIDEAL	9	Unmodified	_FPWDIDEAL_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5200527834	1	1105.52005	1104.51278	1.2479	0.0013795	0.22835	0.00025244	1.4762	0.001632	1105.5203694358593	33.961	0.26545	33.96	33.863	34.129	-0.0012474	117	115	1.5493695	0.06725967	1.54785	314.16602	0	13.638245						931	12	4	NaN	NaN	NaN	0.014046	1	12685	12685		80.639	38.854	1	164900			6399	1391	3672	3755	5122	5122					-0.03529956030570247
FPWGDGNHTL	10	Unmodified	_FPWGDGNHTL_					0	0	0		ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.2645302922501	2	572.26453	1142.51451	1.9794	0.0011328	4.4219	0.0025305	6.4013	0.0036633	572.7701017272536	23.682	0.28912	23.682	23.586	23.875	0	1233	88	0.87812483	0.053388774	0.87812483	355.96515	0	21.64215						374	13	2	NaN	NaN	NaN	0.44412	1	14538	14538		21.771	8.7682	1	102620			6400	1835	3673	3756	5123	5123					-0.051049022219331164
FPWGDGNHTL	10	Unmodified	_FPWGDGNHTL_					0	0	0		ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	ENSG00000111775|ENST00000229379|COX6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2645302922501	2	572.26453	1142.51451	1.6658	0.0009533	3.8654	0.0022121	5.5313	0.0031654	572.7704655875895	23.658	0.33741	23.645	23.572	23.91	-0.013048	1230	91	0.8799654	0.055226803	0.878446	356.71127	0	22.387238						446	15	2	NaN	NaN	NaN	0.21251	1	14059	14059		34.454	13.899	1	143680			6401	1835	3673	3756	5124	5124					-0.051049022219331164
FPWIDAIM	8	Unmodified	_FPWIDAIM_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;ENSG00000121671|ENST00000616080|CRY2;nc|ENSG00000121671|Q49AN0-2|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4910012614	1	992.491001	991.483725	1.8052	0.0017917	-0.9685	-0.00096123	0.83671	0.00083043	992.4906486329909	36.35	0.14463	36.35	36.302	36.446	0	222	43	1.4873441	0.02485621	1.4873441	302.01324	0	5.04718						113	7	3	NaN	NaN	NaN	0.40747	1	8258	8258		36.036	10.285	1	7913.3			6402	375	3674	3757	5125	5125					-0.012357718605585433
FPWIDAIM	8	Unmodified	_FPWIDAIM_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;ENSG00000121671|ENST00000616080|CRY2;nc|ENSG00000121671|Q49AN0-2|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4910012614	1	992.491001	991.483725	1.9431	0.0019285	1.9157	0.0019013	3.8587	0.0038297	992.4930792058577	36.348	0.12038	36.35	36.302	36.422	0.0016747	219	46	1.4891195	0.02662456	1.4876001	302.37375	0	5.40625						108	6	2	NaN	NaN	NaN	0.50567	1	8092	8092		30.791	2.9305	1	8696.8			6403	375	3674	3757	5126	5126					-0.012357718605585433
FPWNSHVVL	9	Unmodified	_FPWNSHVVL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.79018393675	2	549.790184	1097.56581	1.6162	0.00088855	-0.26957	-0.00014821	1.3466	0.00074034	549.7900849441952	26.577	0.19307	26.577	26.505	26.698	0	1281	52	0.84864825	0.03135097	0.84864825	344.1842	0	12.714966						338	9	4	NaN	NaN	NaN	0.011693	1	12753	12753		87.778	37.817	1	108580			6404	1431	3675	3758	5127	5127					0.02093466542760325
FPWNSHVVL	9	Unmodified	_FPWNSHVVL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.79018393675	2	549.790184	1097.56581	1.3092	0.00071978	-0.48106	-0.00026448	0.82813	0.0004553	549.7900459994655	26.601	0.21719	26.59	26.542	26.759	-0.010645	1281	55	0.84864825	0.03319341	0.8471288	344.1842	0	13.462189						358	10	5	NaN	NaN	NaN	0.015029	1	12419	12419		78.289	35.972	1	102020			6405	1431	3675	3758	5128	5128					0.02093466542760325
FPWQWMNLEM	10	Unmodified	_FPWQWMNLEM_					0	0	0			REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3070262711501	2	691.307026	1380.5995	0.76031	0.00052561	-2.0346	-0.0014065	-1.2742	-0.0008809	691.305327434983	38.348	0.19218	38.348	38.275	38.468	0	1116	82	0.94976085	0.04948193	0.94976085	384.21146	0	20.01715						256	9	2	NaN	NaN	NaN	0.22448	1	19891	19891		33.425	10.34	1	24450	+		6406	12829	3676	3759	5129	5129					-0.07557616071994744
FPWQWMNLEM	10	Unmodified						0	0	0			REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	691.307026	1380.5995	0.76031	0.00052561	-2.0346	-0.0014065	-1.2742	-0.0008809	691.305327434983	38.348	0.19218	38.348	38.275	38.468	0	1116	82	0.94976085	0.04948193	0.94976085	384.21146		20.01715	0.023481	-0.00048713	-0.00015671	NaN	33.425	256	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24450	+		6407	12829	3676	3759							-0.07557616071994744
FPWQWMNLEM	10	Unmodified						0	0	0			REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	REV__ENST00000572085.5_1_15:43707600-43785241:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	691.307026	1380.5995	1.7886	0.0012364	-0.48385	-0.00033449	1.3047	0.00090195	691.3072626380655	38.297	0.048141	38.301	38.276	38.325	0.0034256	1113	67	0.9515937	0.040320754	0.95007426	384.9529		16.311127	-0.023481	0.0016569	0.00015671	NaN	33.425	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4698.5	+		6408	12829	3676	3759							-0.07557616071994744
FPWWEKSAF	9	Unmodified	_FPWWEKSAF_					0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.2900167612501	2	599.290017	1196.56548	0.68624	0.00041126	0.63485	0.00038046	1.3211	0.00079172	599.2916865366891	27.687	0.072374	27.677	27.629	27.702	-0.009552	1185	106	0.90755045	0.06433731	0.906031	367.6952	0	26.066345						185	4	2	NaN	NaN	NaN	0.3947	1	15712	15712		13.949	0.21171	1	26537			6409	2994	3677	3760	5130	5130					-0.024939531770996837
FPWWEKSAF	9	Unmodified						0	0	0		nc|ENSG00000136114|Q9NS62-3|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	nc|ENSG00000136114|Q9NS62-3|THSD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.290017	1196.56548	1.2449	0.00074604	1.6366	0.00098081	2.8815	0.0017268	599.2911277485531	27.688	0.16892	27.688	27.519	27.688	0	1185	103	0.90755045	0.062502444	0.90755045	367.6952		25.322968	0.0051727	0.00060553	0.00075972	NaN	13.949	229	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30314			6410	2994	3677	3760							-0.024939531770996837
FPYDDPTYDKL	11	Unmodified	_FPYDDPTYDKL_					0	0	0		ENSG00000149716|ENST00000279147|LTO1;ENST00000569105.5_1_11:69468929-69488043:-|nuORF	ENSG00000149716|ENST00000279147|LTO1	ENSG00000149716|ENST00000279147|LTO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.31662544225	2	687.316625	1372.6187	2.4314	0.0016712	-1.3146	-0.00090355	1.1168	0.00076762	687.3159329599927	23.489	0.43396	23.489	23.272	23.706	0	1086	100	0.9680805	0.0604257	0.9680805	391.645	0	24.44571						1119	19	4	NaN	NaN	NaN	0.00024483	1	19819	19819		80.4	53.354	1	138910			6411	3693	3678	3761	5131	5131					-0.052706649757510604
FPYDDPTYDKL	11	Unmodified	_FPYDDPTYDKL_					0	0	0		ENSG00000149716|ENST00000279147|LTO1;ENST00000569105.5_1_11:69468929-69488043:-|nuORF	ENSG00000149716|ENST00000279147|LTO1	ENSG00000149716|ENST00000279147|LTO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.31662544225	2	687.316625	1372.6187	2.0403	0.0014023	-0.47367	-0.00032556	1.5666	0.0010768	687.3158624791638	23.465	0.28952	23.451	23.283	23.572	-0.013294	1086	97	0.9680805	0.058591485	0.9665611	391.645	0	23.703674						616	13	3	NaN	NaN	NaN	3.6536E-07	1	18884	18884		91.484	57.03	1	83975			6412	3693	3678	3761	5132	5132					-0.052706649757510604
FPYEYSYGL	9	Unmodified	_FPYEYSYGL_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.5091537460999	1	1138.50915	1137.50188	2.6255	0.0029892	-1.9271	-0.002194	0.69839	0.00079512	1138.5069944496565	28.146	0.048262	28.146	28.122	28.17	0	60	49	1.582944	0.028250933	1.582944	320.85904	0	5.7263794						64	3	2	NaN	NaN	NaN	0.23112	1	14360	14360		23.334	8.159	1	6042.4			6413	5370	3679	3762	5133	5133					-0.06137358404862425
FPYEYSYGL	9	Unmodified	_FPYEYSYGL_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1138.5091537460999	1	1138.50915	1137.50188	1.6322	0.0018583	0.33639	0.00038298	1.9686	0.0022413	1138.5078719437017	28.314	0.072384	28.305	28.305	28.378	-0.0089779	60	46	1.582944	0.026481032	1.5814246	320.859	0	5.3676453						90	4	3	NaN	NaN	NaN	0.062072	1	13889	13889		41.785	25.2	1	5869.5			6414	5370	3679	3762	5134	5134					-0.06137358404862425
FPYFYSKRCP	10	Unmodified	_FPYFYSKRCP_					0	0	0			REV__ENST00000537473.2_1_12:57081489-57081642:-|nuORF	REV__ENST00000537473.2_1_12:57081489-57081642:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.54623121086667	3	436.546231	1306.61686	1.5459	0.00067484	7.615	0.0033243	9.1608	0.0039991	436.5493129807758	23.489	0.16888	23.476	23.427	23.596	-0.013294	1425	31	0.7599118	0.018532872	0.75839233	461.37134	0	11.252014						144	8	3	NaN	NaN	NaN	0.76025	1	18045	18045		3.9281	0.34868	1	16829	+		6415	12681	3680	3763	5135	5135					-0.02417952474706908
FPYKIDDIL	9	Unmodified	_FPYKIDDIL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.3053324744501	2	562.305332	1122.59611	1.9386	0.0010901	-1.8811	-0.0010577	0.057586	3.2381E-05	562.3047289233735	28.339	0.14477	28.339	28.243	28.388	0	1221	64	0.885486	0.03863156	0.885486	359.02512	0	15.663361						228	7	3	NaN	NaN	NaN	0.31471	1	13799	13799		17.97	2.507	1	50210			6416	2522	3681	3764	5136	5136					0.03971780417282389
FPYPYAERL	9	Unmodified	_FPYPYAERL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2952991044	2	578.295299	1154.57605	2.1023	0.0012158	-2.3939	-0.0013844	-0.29153	-0.00016859	578.2936934868414	23.513	0.24105	23.513	23.393	23.634	0	1185	79	0.90755045	0.04779601	0.90755045	367.8476	0	19.37265						458	11	4	NaN	NaN	NaN	0.21451	1	14969	14969		24.4	11.397	1	68673			6417	1541	3682	3765	5137	5137					0.004940294773177811
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7685828274	2	544.768583	1087.52261	1.2128	0.00066067	-0.79324	-0.00043213	0.41952	0.00022854	544.7677502001524	29.305	0.096512	29.305	29.28	29.377	0	1224	43	0.883646	0.025764108	0.883646	358.4192	0	10.450287						118	5	2	NaN	NaN	NaN	0.11656	1	12275	12275		47.04	26.527	1	18652			6418	837	3683	3766	5138	5138					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5298891881998	1	1088.52989	1087.52261	1.8633	0.0020282	-0.3732	-0.00040624	1.4901	0.001622	1088.530712546305	29.546	0.16891	29.546	29.522	29.691	0	93	91	1.5635144	0.053049088	1.5635144	317.09534	0	10.75885						336	8	2	NaN	NaN	NaN	0.16939	1	12276	12276		38.918	18.362	1	36220			6419	837	3683	3766	5139	5139					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5298891881998	1	1088.52989	1087.52261	2.437	0.0026527	-0.36687	-0.00039934	2.0701	0.0022534	1088.529731175967	29.232	0.43441	29.232	29.063	29.498	0	93	166	1.5635144	0.09731352	1.5635144	317.09534	0	19.736115						2340	19	5	NaN	NaN	NaN	0.015029	1	12277	12277		91.429	44.293	1	1143500			6420	837	3683	3766	5140	5140					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5298891881998	1	1088.52989	1087.52261	0.82503	0.00089807	0.25983	0.00028284	1.0849	0.0011809	1088.5299229562377	30.583	0.19304	30.577	30.553	30.746	-0.0057545	87	73	1.5670487	0.04241681	1.5655292	317.81213	0	8.602539						297	9	2	NaN	NaN	NaN	0.024221	1	11966	11966		78.398	50.609	1	27422			6421	837	3683	3766	5141	5141					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5298891881998	1	1088.52989	1087.52261	1.7775	0.0019349	-0.56168	-0.00061141	1.2158	0.0013234	1088.5293623764958	29.256	0.45853	29.248	29.055	29.513	-0.0077229	90	178	1.5652816	0.10441303	1.5637622	317.45377	0	21.175964						2460	20	5	NaN	NaN	NaN	0.0073225	1	11967	11967		115.51	76.051	1	1126000			6422	837	3683	3766	5142	5142					-0.01764768025191188
FPYSYEVAL	9	Unmodified	_FPYSYEVAL_					0	0	0		nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENSG00000075420|ENST00000415807|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	nc|ENSG00000075420|Q53EP0-2|FNDC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7685828274	2	544.768583	1087.52261	1.1427	0.00062252	0.52482	0.0002859	1.6675	0.00090843	544.7686617628978	29.28	0.2172	29.272	29.151	29.368	-0.0077229	1224	58	0.883646	0.034967482	0.88212657	358.4192	0	14.183289						283	10	3	NaN	NaN	NaN	0.16939	1	11968	11968		31.561	17.519	1	41119			6423	837	3683	3766	5143	5143					-0.01764768025191188
FPYVRDFVM	9	Unmodified	_FPYVRDFVM_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.29170217045	2	587.291702	1172.56885	1.8589	0.0010917	-2.5762	-0.001513	-0.71736	-0.0004213	587.2905493216471	27.591	0.19306	27.591	27.495	27.688	0	1200	82	0.89836043	0.049653053	0.89836043	364.05673	0	20.121674						334	9	4	NaN	NaN	NaN	0.015029	1	15569	15569		78.289	44.591	1	137200			6424	4223	3684	3767	5144	5144					-0.010530263947657659
FPYVRDFVM	9	Unmodified	_FPYVRDFVM_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.29170217045	2	587.291702	1172.56885	1.218	0.00071535	-1.6207	-0.00095185	-0.40269	-0.0002365	587.2914026754578	27.615	0.21714	27.605	27.557	27.774	-0.009552	1200	85	0.89836043	0.05148375	0.896841	364.05673	0	20.863556						343	10	4	NaN	NaN	NaN	0.028569	1	15015	15015		60.984	32.088	1	133670			6425	4223	3684	3767	5145	5145					-0.010530263947657659
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(56)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2891594815	2	595.289159	1188.56377	1.5941	0.00094895	0.35644	0.00021218	1.9505	0.0011611	595.2898021410716	24.864	0.28959	24.864	24.767	25.057	0	1191	94	0.90387505	0.05694753	0.90387505	366.2342	0	23.074158						645	13	5	NaN	NaN	NaN	0.032689	1	16109	16109		55.592	26.696	1	258350			6426	4223	3684	3768	5146	5146		453			-0.022973302573973342
FPYVRDFVM	9	Oxidation (M)	_FPYVRDFVM(Oxidation (M))_		FPYVRDFVM(1)		FPYVRDFVM(53)	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2891594815	2	595.289159	1188.56377	1.3826	0.00082303	1.0892	0.00064839	2.4718	0.0014714	595.2903808123029	24.888	0.31368	24.875	24.755	25.068	-0.012394	1191	100	0.90387505	0.060615063	0.9023556	366.2342	0	24.56015						688	14	5	NaN	NaN	NaN	0.03533	1	15495	15495		53.14	32.585	1	249000			6427	4223	3684	3768	5147	5147		453			-0.022973302573973342
FPYVWMGTVH	10	Unmodified	_FPYVWMGTVH_					0	0	0			REV__nc|ENSG00000146416|Q9NVV5-3|AIG1	REV__nc|ENSG00000146416|Q9NVV5-3|AIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.7971516891	2	618.797152	1235.57975	1.9173	0.0011864	-2.6326	-0.001629	-0.71525	-0.00044259	619.2974992173431	18.314	0.048029	18.3	18.276	18.324	-0.01395	1191	46	0.90387505	0.027567148	0.9023556	366.07425	0	11.164856						63	3	2	NaN	NaN	NaN	0.67523	1	16685	16685		9.746	0	1	5678.5	+		6428	9944	3685	3769	5148	5148					-0.028616240204655696
FPYYGREEEL	10	Unmodified	_FPYYGREEEL_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8036852425001	2	651.803685	1301.59282	1.1066	0.00072126	-4.6974	-0.0030618	-3.5908	-0.0023405	651.8000844269351	21.753	0.14442	21.74	21.667	21.812	-0.013895	1152	52	0.92775106	0.031202316	0.9262317	375.53354	0	12.630035						129	7	2	NaN	NaN	NaN	0.4422	1	17972	17972		21.85	7.9016	1	12450			6429	3634	3686	3770	5149	5149					-0.045915144273521946
FPYYGREEEL	10	Unmodified						0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	651.803685	1301.59282	1.9142	0.0012477	-10.228	-0.0066667	-8.3138	-0.005419	651.7977078947918	21.585	0.024046	21.585	21.561	21.585	0	1158	28	0.92408	0.016524255	0.92408	374.0476		6.688629	-0.077338	-0.0043923	-0.0010758	NaN	21.85	25	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1745.7			6430	3634	3686	3770							-0.045915144273521946
FQDNFEFVQWF	11	Unmodified	_FQDNFEFVQWF_					0	0	0		ENST00000506459.1_1_4:33012907-33013108:-|nuORF;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant;ENSG00000101367|ENST00000375571|MAPRE1	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.8380593761	2	753.838059	1505.66157	1.8453	0.001391	0.48819	0.00036802	2.3335	0.0017591	753.8387221294711	26.432	0.16894	26.432	26.384	26.553	0	987	70	1.0283957	0.041979074	1.0283957	415.6792	0	16.967987						195	8	2	NaN	NaN	NaN	0.59385	1	20602	20602		14.425	1.4222	1	33005			6431	1322	3687	3771	5150	5150					-0.07103850127691658
FQDSVLEEEV	10	Unmodified	_FQDSVLEEEV_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL;nc|ENSG00000124092|Q8NI51-4|CTCFL;nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7798757951999	2	597.779876	1193.5452	1.2714	0.00075999	-9.9883	-0.0059708	-8.7169	-0.0052108	597.7737465363947	18.866	0.16815	18.852	18.756	18.924	-0.014059	1185	61	0.90755045	0.036750257	0.906031	367.70584	0	14.889832						256	8	3	NaN	NaN	NaN	0.70677	1	15625	15625		7.5876	1.8934	1	33531			6432	2394	3688	3772	5151	5151					-0.04383213418259402
FQEDRYWRF	9	Unmodified	_FQEDRYWRF_					0	0	0		MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant;ENSG00000102996|ENST00000219271|MMP15	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.5473997020333	3	449.5474	1345.62037	2.1156	0.00095108	-3.4466	-0.0015494	-1.3309	-0.00059831	449.88028192965913	21.874	0.072262	21.86	21.836	21.908	-0.013895	1416	19	0.76547134	0.0111172795	0.7639519	464.60605	0	6.747711						48	4	3	NaN	NaN	NaN	0.60102	1	18620	18620		5.4499	0.83248	1	2405.6			6433	1405	3689	3773	5152	5152					-0.038615663764858255
FQETQPAYF	9	Unmodified	_FQETQPAYF_					0	0	0		ENST00000307602.8_1_8:42873688-42873757:+|nuORF	ENST00000307602.8_1_8:42873688-42873757:+|nuORF	ENST00000307602.8_1_8:42873688-42873757:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.76128911155	2	565.761289	1129.50803	1.5651	0.0008855	-0.88896	-0.00050294	0.67619	0.00038256	565.7605567674068	27.084	0.12067	27.084	27.06	27.181	0	1251	79	0.8670771	0.047873557	0.8670771	351.535	0	19.40915						173	6	3	NaN	NaN	NaN	0.44082	1	14053	14053		12.049	0.87837	1	20534			6434	6431	3690	3774	5153	5153					-0.051548401733498395
FQEVQEIL	8	Unmodified	_FQEVQEIL_					0	0	0		DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.26620731395	2	503.266207	1004.51786	1.9197	0.00096614	-1.9517	-0.00098224	-0.032006	-1.6108E-05	503.2663682467302	29.98	0.072403	29.98	29.956	30.029	0	1299	31	0.8375814	0.018450797	0.8375814	340.08572	0	7.4916077						56	4	2	NaN	NaN	NaN	0.80191	1	8765	8765		8.962	0	1	4259.3			6435	262	3691	3775	5154	5154					0.01578347832048621
FQFRKLHIILF	11	Unmodified	_FQFRKLHIILF_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.4400893546501	2	731.440089	1460.86563	2.0578	0.0015051	-0.55405	-0.00040525	1.5037	0.0010999	731.9426971971454	34.468	0.072342	34.467	34.443	34.515	-0.0006485	1038	28	0.997351	0.01644963	0.9958316	403.24347	0	6.650818						44	4	2	NaN	NaN	NaN	0.77278	1	19451	19451		1.5054	0	1	2884.7	+		6436	9461	3692	3776	5155	5155					0.1536275882431255
FQGEHPAD	8	Unmodified	_FQGEHPAD_					0	0	0		ENST00000538061.1_12:122614496-122617938:+|nuORF	ENST00000538061.1_12:122614496-122617938:+|nuORF	ENST00000538061.1_12:122614496-122617938:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.3846219345	1	900.384622	899.377345	2.1563	0.0019415	4.6567	0.0041928	6.8129	0.0061343	900.3890309506656	25.877	0.21718	25.877	25.853	26.07	0	378	40	1.3947657	0.023207426	1.3947657	283.61203	0	4.718994						145	10	2	NaN	NaN	NaN	0.62311	1	6046	6046		23.85	4.5657	1	11672			6437	7483	3693	3777	5156	5156					-0.07636811101519925
FQGHSGAQ	8	Unmodified	_FQGHSGAQ_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.3743915992001	1	831.374392	830.367115	1.5669	0.0013026	-8.1991	-0.0068166	-6.6323	-0.0055139	831.3670493699672	27.277	0.14477	27.277	27.229	27.374	0	444	55	1.3554435	0.03221035	1.3554435	275.96124	0	6.557892						164	7	3	NaN	NaN	NaN	0.55996	1	5138	5138		27.789	12.776	1	14132			6438	3660	3694	3778	5157	5157					-0.05485374036095436
FQGLGPGF	8	Unmodified	_FQGLGPGF_					0	0	0		ENST00000570273.5_1_16:56966069-56976120:+|nuORF;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.4144654999002	1	822.414465	821.407189	1.7947	0.001476	-0.84741	-0.00069692	0.94728	0.00077905	822.4131785491746	27.398	0.19312	27.398	27.35	27.543	0	471	67	1.3393306	0.03940618	1.3393306	272.72913	0	8.024292						318	9	3	NaN	NaN	NaN	0.79379	1	5033	5033		10.052	0	1	36187			6439	573	3695	3779	5158	5158					-0.01065827365516725
FQGLGPGF	8	Unmodified						0	0	0		ENST00000570273.5_1_16:56966069-56976120:+|nuORF;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.414465	821.407189	1.1804	0.00097075	-0.72145	-0.00059333	0.45892	0.00037742	822.41361916109	27.397	0.19308	27.387	27.363	27.556	-0.010126	471	70	1.3393306	0.041199565	1.3378111	272.72913		8.389496	-0.0054565	4.1277E-05	-0.00075972	NaN	10.052	285	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34574			6440	573	3695	3779							-0.01065827365516725
FQGPGGPV	8	Unmodified	_FQGPGGPV_					0	0	0			REV__ENST00000589644.1_1_19:38799520-38799736:-|nuORF	REV__ENST00000589644.1_1_19:38799520-38799736:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.3831653715001	1	758.383165	757.375889	0.82787	0.00062784	6.6223	0.0050223	7.4502	0.0056501	758.388600254496	33.673	0.12067	33.673	33.648	33.769	0	552	49	1.2908988	0.028741598	1.2908988	263.23218	0	5.86084						118	6	2	NaN	NaN	NaN	0.80071	1	4187	4187		9.1232	3.0329	1	9473.2	+		6441	12908	3696	3780	5159	5159					-0.012504003996127722
FQGQEYLV	8	Unmodified	_FQGQEYLV_					0	0	0		nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-4|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1	nc|ENSG00000073146|Q9BXT6-2|MOV10L1	nc|ENSG00000073146|Q9BXT6-2|MOV10L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2452749066	2	492.245275	982.475997	0.60852	0.00029954	-2.0664	-0.0010172	-1.4579	-0.00071764	492.244169242886	29.062	0.21718	29.055	28.958	29.175	-0.0077209	1338	52	0.81357855	0.031412125	0.8120591	330.43988	0	12.75824						163	10	2	NaN	NaN	NaN	0.83211	1	7793	7793		4.9097	0	1	22194			6442	807	3697	3781	5160	5160					-0.015942078564762596
FQILHHTCQRY	11	Unmodified	_FQILHHTCQRY_					0	0	0		nc|ENSG00000168952|Q8NFX7-2|STXBP6;ENSG00000168952|ENST00000323944|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3589703812	2	723.35897	1444.70339	1.1312	0.00081829	2.365	0.0017107	3.4962	0.002529	723.3600608071997	20.718	0.096458	20.718	20.694	20.79	0	1065	52	0.9808926	0.031104922	0.9808926	396.6307	0	12.577484						199	5	4	NaN	NaN	NaN	0.75376	1	20354	20354		3.9281	0.7165	1	32119			6443	4646	3698	3782	5161	5161					-0.0011757292013498954
FQLWTITAFR	10	Unmodified	_FQLWTITAFR_					0	0	0		ENST00000453744.6_1_4:103718319-103718415:-|nuORF	ENST00000453744.6_1_4:103718319-103718415:-|nuORF	ENST00000453744.6_1_4:103718319-103718415:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.2362740361	3	428.236274	1281.68699	1.4061	0.00060214	6.0297	0.0025821	7.4358	0.0031843	428.2392014197126	21.633	0.19271	21.633	21.561	21.754	0	1410	58	0.76917666	0.03521824	0.76917666	467.0913	0	21.386658						263	9	4	NaN	NaN	NaN	0.69717	1	18456	18456		9.5705	2.5861	1	21912			6444	7049	3699	3783	5162	5162					0.05741669185408682
FQMRLRETWI	10	Unmodified	_FQMRLRETWI_					0	0	0			REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	REV__nc|ENSG00000159459|Q8IWV7-2|UBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.57993488690005	3	460.579935	1378.71798	1.5403	0.00070945	5.4013	0.0024877	6.9417	0.0031972	460.58312385409465	25.684	0.12065	25.684	25.636	25.757	0	1374	76	0.791392	0.046274483	0.791392	480.22162	0	28.07965						142	6	2	NaN	NaN	NaN	0.71345	1	19881	19881		7.1304	1.1968	1	50312	+		6445	10184	3700	3784	5163	5163					0.04376499228010289
FQNMDGKELC	10	Unmodified	_FQNMDGKELC_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.7573662141001	2	592.757366	1183.50018	1.2193	0.00072275	0.33163	0.00019658	1.5509	0.00091933	593.2587352321607	30.535	0.24132	30.535	30.366	30.608	0	1221	64	0.885486	0.03861904	0.885486	358.8009	0	15.648529						417	11	6	NaN	NaN	NaN	0.65742	1	15944	15944		10.965	2.7203	1	54050			6446	3751	3701	3785	5164	5164					-0.08423058756761748
FQNYIGECCS	10	Unmodified	_FQNYIGECCS_					0	0	0			REV__ENST00000481551.5_1_7:92158186-92158869:+|nuORF	REV__ENST00000481551.5_1_7:92158186-92158869:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.2284415991501	2	582.228442	1162.44233	1.4423	0.00083975	3.0961	0.0018027	4.5384	0.0026424	582.2298675662872	12.654	0.072097	12.645	12.621	12.693	-0.0088415	1260	43	0.8615505	0.025794804	0.8600311	349.17505	0	10.454285						100	4	3	NaN	NaN	NaN	0.75466	1	14700	14700		4.3102	0.34164	1	7453	+		6447	12387	3702	3786	5165	5165					-0.13239320682191646
FQPDEDFSNC	10	Unmodified	_FQPDEDFSNC_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;ENST00000561512.1_1_16:53495692-53498290:+|nuORF;nc|ENSG00000103479|Q08999-2|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2269531552001	2	601.226953	1200.43935	0.81629	0.00049077	2.2112	0.0013294	3.0275	0.0018202	601.2287463629518	34.901	0.19293	34.901	34.829	35.022	-4.5776E-05	1200	58	0.89836043	0.034933507	0.896841	363.95844	0	14.152832						199	9	2	NaN	NaN	NaN	0.65442	1	15829	15829		11.17	1.4243	1	24604			6448	1443	3703	3787	5166	5166					-0.15284872535335126
FQQFFHCYCP	10	Unmodified	_FQQFFHCYCP_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;ENSG00000121671|ENST00000616080|CRY2;nc|ENSG00000121671|Q49AN0-2|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.51605468860004	3	440.516055	1318.52633	0.95859	0.00042227	-2.7975	-0.0012323	-1.8389	-0.00081008	440.5149134531267	14.957	0.14416	14.957	14.909	15.053	0	1392	31	0.780288	0.018512845	0.780288	473.69785	0	11.23877						121	7	3	NaN	NaN	NaN	0.77421	1	19083	19083		1.6985	0	1	12681			6449	375	3704	3788	5167	5167					-0.12018744794613667
FQQMHYLQHQ	10	Unmodified	_FQQMHYLQHQ_					0	0	0		ENST00000229595.5_1_6:119228648-119228744:+|nuORF	ENST00000229595.5_1_6:119228648-119228744:+|nuORF	ENST00000229595.5_1_6:119228648-119228744:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3167712155001	2	680.316771	1358.61899	1.6453	0.0011193	0.57725	0.00039271	2.2225	0.001512	680.3168245943708	19.42	0.21596	19.42	19.3	19.516	0	1107	34	0.9552588	0.020154953	0.9552588	386.49756	0	8.154663						87	10	2	NaN	NaN	NaN	0.77928	1	19662	19662		0.69115	0	1	6744			6450	6248	3705	3789	5168	5168					-0.04597523736879339
FQRWHLDEVFL	11	Unmodified	_FQRWHLDEVFL_					0	0	0		ENST00000490251.1_1_7:43679183-43685017:-|nuORF;ENSG00000106603|ENST00000223336|COA1	ENST00000490251.1_1_7:43679183-43685017:-|nuORF	ENST00000490251.1_1_7:43679183-43685017:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3829684062499	2	745.382968	1488.75138	1.5021	0.0011197	6.7961	0.0050657	8.2983	0.0061854	745.3885377917092	34.685	0.096386	34.684	34.66	34.756	-0.0006485	1005	43	1.0174452	0.025559306	1.0159258	411.29553	0	10.332184						122	5	3	NaN	NaN	NaN	0.66717	1	19538	19538		9.6116	0.69255	1	11119			6451	1607	3706	3790	5169	5169					0.026558242715282177
FQWIRCLF	8	Unmodified	_FQWIRCLF_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.7891296917501	2	556.78913	1111.56371	1.2275	0.00068346	2.6474	0.0014741	3.8749	0.0021575	557.2920818800717	24.55	0.16888	24.538	24.489	24.658	-0.012394	1245	88	0.87076044	0.053359926	0.869241	353.09705	0	21.637665						201	8	2	NaN	NaN	NaN	0.80071	1	12968	12968		9.1232	0.16122	1	32552			6452	3999	3707	3791	5170	5170					0.012387145332922955
FRCGAPRDEE	10	Unmodified	_FRCGAPRDEE_					0	0	0			REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.26420432875	2	590.264204	1178.51386	0.88172	0.00052045	-9.5228	-0.005621	-8.6411	-0.0051005	590.2598314859848	31.982	0.072386	31.979	31.979	32.051	-0.0037594	1221	46	0.885486	0.02759397	0.88396657	358.81842	0	11.181702						61	4	2	NaN	NaN	NaN	0.75466	1	15193	15193		4.3102	0.34164	1	4792.9	+		6453	12159	3708	3792	5171	5171					-0.0682606493332969
FRCGAPRDEE	10	Unmodified						0	0	0			REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.264204	1178.51386	1.1054	0.00065248	-7.1608	-0.0042268	-6.0554	-0.0035743	590.2604234411729	31.983	0.072412	31.983	31.983	32.056	0	1224	49	0.883646	0.029438376	0.883646	358.0728		11.929047	0.0024234	0.0014673	-0.00016028	NaN	4.3102	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6428.1	+		6454	12159	3708	3792							-0.0682606493332969
FRCGAPRDEE	10	Unmodified						0	0	0			REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.264204	1178.51386	0.88172	0.00052045	-9.5228	-0.005621	-8.6411	-0.0051005	590.2598314859848	31.982	0.072386	31.979	31.979	32.051	-0.0037594	1221	46	0.885486	0.02759397	0.88396657	358.81842		11.181702	-0.0024234	-0.001321	0.00016028	NaN	4.3102	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4792.9	+		6455	12159	3708	3792							-0.0682606493332969
FRCYRKHGKL	10	Unmodified	_FRCYRKHGKL_					0	0	0			REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3613161049001	2	654.361316	1306.70808	1.1262	0.00073692	1.4834	0.00097068	2.6096	0.0017076	654.3621169466658	29.256	0.096498	29.256	29.256	29.353	0	1107	52	0.9552588	0.03115189	0.9552588	386.65216	0	12.6091						197	5	4	NaN	NaN	NaN	0.77421	1	18882	18882		1.9246	0.22244	1	41719	+		6456	8317	3709	3793	5172	5172					0.06699356013291435
FRDLNAQWYIG	11	Unmodified	_FRDLNAQWYIG_					0	0	0			REV__ENSG00000186141|ENST00000334163|POLR3C	REV__ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.8462187592	2	691.846219	1381.67788	1.5988	0.0011061	6.7666	0.0046815	8.3654	0.0057875	692.3518814437682	23.923	0.072342	23.923	23.899	23.971	0	1032	52	1.0010062	0.031071365	1.0010062	404.93887	0	12.569397						77	4	2	NaN	NaN	NaN	0.71564	1	19910	19910		6.4299	1.7009	1	7307	+		6457	10992	3710	3794	5173	5173					0.0023127582908273325
FRDVALEY	8	Unmodified	_FRDVALEY_					0	0	0			REV__GALNT8|p.G326R|1|0.2|ENSG00000130035|chr12:4745544-4745544|G/A|missense_variant	REV__GALNT8|p.G326R|1|0.2|ENSG00000130035|chr12:4745544-4745544|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5098224481	1	1012.50982	1011.50255	1.5974	0.0016173	-5.5786	-0.0056484	-3.9812	-0.004031	1012.5019820482403	30.608	0.072433	30.608	30.584	30.656	0	186	34	1.5086359	0.019503951	1.5086359	306.25354	0	3.95932						51	4	2	NaN	NaN	NaN	0.80071	1	9039	9039		9.1232	0	1	3727.4	+		6458	12995	3711	3795	5174	5174					-0.0027451896515913177
FRFRAFHF	8	Unmodified	_FRFRAFHF_					0	0	0		nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.2985104953501	2	564.29851	1126.58247	1.7008	0.00095977	-11.373	-0.0064176	-9.672	-0.0054579	564.291762650258	23.609	0.21692	23.596	23.5	23.717	-0.013048	1227	61	0.88180584	0.036801934	0.8802864	357.51764	0	14.920898						184	10	2	NaN	NaN	NaN	0.80071	1	13522	13522		9.1232	3.429	1	21681			6459	5527	3712	3796	5175	5175					0.024240122193759817
FRGNNQHNCA	10	Unmodified	_FRGNNQHNCA_					0	0	0			REV__ENST00000567680.1_1_15:66064063-66064450:-|nuORF	REV__ENST00000567680.1_1_15:66064063-66064450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7543381342001	2	580.754338	1159.49412	1.8639	0.0010824	0.86076	0.00049989	2.7246	0.0015823	581.2556624200112	36.974	0.096123	36.976	36.952	37.048	0.0022507	1236	37	0.876284	0.02208829	0.8747646	355.15692	0	8.952362						56	5	2	NaN	NaN	NaN	0.77513	1	14603	14603		1.7022	0	1	3492.5	+		6460	10313	3713	3797	5176	5176					-0.07924396153407542
FRGQFLKG	8	Unmodified	_FRGQFLKG_					0	0	0			REV__nc|ENSG00000142405|P59046-4|NLRP12	REV__nc|ENSG00000142405|P59046-4|NLRP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.5363119701002	1	952.536312	951.529036	1.4873	0.0014167	4.0132	0.0038227	5.5006	0.0052395	952.5404536444086	36.059	0.096359	36.06	36.036	36.132	0.0011024	264	55	1.4624695	0.03200209	1.46095	297.1332	0	6.5019226						97	5	2	NaN	NaN	NaN	0.72043	1	6994	6994		17.78	2.6049	1	9545.6	+		6461	9843	3714	3798	5177	5177					0.05133214716852308
FRGTLMLVL	9	Unmodified	_FRGTLMLVL_					0	0	0			REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF	REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3124376125501	2	525.312438	1048.61032	0.97654	0.00051299	-1.8352	-0.00096407	-0.8587	-0.00045108	525.3114926296278	27.783	0.14477	27.774	27.677	27.822	-0.009552	1224	91	0.883646	0.055214822	0.88212657	358.58554	0	22.40628						332	7	4	NaN	NaN	NaN	0.23112	1	10367	10367		23.334	0	1	54237	+		6462	9601	3715	3799	5178	5178					0.08796154364586073
FRIFWVSLCWP	11	Unmodified	_FRIFWVSLCWP_					0	0	0		SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|19|2|sense	SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|19|2|sense	SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|19|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3761005018501	2	727.376101	1452.73765	1.7534	0.0012754	2.0812	0.0015138	3.8347	0.0027892	727.3788209479958	21.368	0.048063	21.368	21.344	21.392	0	1005	25	1.0174452	0.014603853	1.0174452	411.38943	0	5.9048157						28	3	2	NaN	NaN	NaN	0.76654	1	20392	20392		2.5994	1.094	1	1639.5			6463	13699	3716	3800	5179	5179					0.02938875238783112
FRLHFCLFLL	10	Unmodified	_FRLHFCLFLL_					0	0	0			REV__ENSG00000205403|ENST00000394634|CFI	REV__ENSG00000205403|ENST00000394634|CFI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.9143663748667	3	436.914366	1307.72127	1.5616	0.0006823	5.0346	0.0021997	6.5962	0.002882	436.91667356260905	18.892	0.19206	18.892	18.772	18.964	0	1344	61	0.8098828	0.036949456	0.8098828	491.70633	0	22.433258						212	9	2	NaN	NaN	NaN	0.66268	1	18900	18900		5.4499	1.201	1	19515	+		6464	11262	3717	3801	5180	5180					0.07971794072659577
FRLSNRGPL	9	Unmodified	_FRLSNRGPL_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.3065324927001	2	530.306532	1058.59851	1.4756	0.00078249	8.0325	0.0042597	9.508	0.0050422	530.8126664544421	25.057	0.048286	25.045	25.021	25.069	-0.012011	1260	46	0.8615505	0.027629793	0.8600311	349.57635	0	11.210876						53	3	2	NaN	NaN	NaN	0.63698	1	10807	10807		3.9685	1.079	1	5378.5			6465	1775	3718	3802	5181	5181					0.0715567366560208
FRQAGKTT	8	Unmodified	_FRQAGKTT_					0	0	0		ENST00000529545.1_1_11:118940277-118941110:+|nuORF;nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	ENST00000529545.1_1_11:118940277-118941110:+|nuORF	ENST00000529545.1_1_11:118940277-118941110:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.75105877625	2	454.751059	907.487565	0.88764	0.00040366	2.3471	0.0010674	3.2348	0.001471	454.75185595645786	21.103	0.16853	21.089	20.993	21.162	-0.014004	1359	64	0.8006399	0.0388453	0.7991205	325.55545	0	15.795258						205	8	2	NaN	NaN	NaN	0.81251	1	6075	6075		7.5404	1.45	1	13629			6466	4069	3719	3803	5182	5182					0.030120339575091748
FRQKSLIKEL	10	Unmodified	_FRQKSLIKEL_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1261.7626830913002	1	1261.76268	1260.75541	1.629	0.0020554	-1.012	-0.001277	0.61696	0.00077846	1261.7622989378804	39.139	0.096497	39.143	39.143	39.24	0.0046806	612	88	1.2549332	0.052214026	1.2534138	254.07349	0	10.571243						149	5	2	NaN	NaN	NaN	0.77928	1	17237	17237		0.69115	0	1	11103	+		6467	10866	3720	3804	5183	5183					0.1354591376530152
FRRASPTPV	9	Unmodified	_FRRASPTPV_					0	0	0		ENST00000373055.5_1_1:38174048-38174201:+|nuORF	ENST00000373055.5_1_1:38174048-38174201:+|nuORF	ENST00000373055.5_1_1:38174048-38174201:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7932579419501	2	515.793258	1029.57196	2.1784	0.0011236	-7.2319	-0.0037302	-5.0535	-0.0026066	515.7883245916066	16.925	0.071924	16.925	16.901	16.973	0	1377	28	0.7895419	0.016653419	0.7895419	320.47467	0	6.7595825						52	4	2	NaN	NaN	NaN	0.63698	1	9769	9769		3.9685	0.39529	1	3767.8			6468	6669	3721	3805	5184	5184					0.05835984774262215
FRRSRPHFVP	10	Unmodified	_FRRSRPHFVP_					0	0	0		ENST00000546151.5_1_11:61125276-61129264:-|nuORF;ENST00000536687.1_1_11:61123996-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.8650802143501	2	649.86508	1297.71561	1.3505	0.00087764	-5.9941	-0.0038954	-4.6436	-0.0030177	650.363375252065	38.946	0.04805	38.951	38.903	38.951	0.0046844	1200	55	0.89836043	0.033093095	0.896841	363.64825	0	13.395782						102	3	3	NaN	NaN	NaN	0.77421	1	17906	17906		1.9246	0	1	7972.7			6469	7474	3722	3806	5185	5185					0.07865831605226958
FRSVVKEII	9	Unmodified	_FRSVVKEII_					0	0	0		ENST00000437180.5_1_21:36421141-36421491:-|nuORF	ENST00000437180.5_1_21:36421141-36421491:-|nuORF	ENST00000437180.5_1_21:36421141-36421491:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8345914404001	2	545.834591	1089.65463	1.2295	0.00067111	-1.1766	-0.00064225	0.052872	2.886E-05	545.8337854525779	21.2	0.2167	21.186	21.041	21.258	-0.014004	1206	37	0.894683	0.022066832	0.89316356	362.8871	0	8.950378						272	10	3	NaN	NaN	NaN	0.33202	1	12091	12091		16.858	1.3956	1	38562			6470	6997	3723	3807	5186	5186					0.11338881782421595
FRTGVENRYP	10	Unmodified	_FRTGVENRYP_					0	0	0			REV__ENST00000552949.1_1_12:69753653-69756720:+|nuORF	REV__ENST00000552949.1_1_12:69753653-69756720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.5473997020334	3	413.5474	1237.62037	1.4987	0.00061978	6.5125	0.0026932	8.0112	0.003313	413.54898190085294	21.585	0.12047	21.585	21.537	21.657	0	1440	37	0.7506418	0.02225393	0.7506418	456.0085	0	13.5190735						100	6	3	NaN	NaN	NaN	0.70677	1	17470	17470		6.1406	1.2399	1	7313.9	+		6471	12747	3724	3808	5187	5187					0.011064336235222072
FRTGVENRYP	10	Unmodified						0	0	0			REV__ENST00000552949.1_1_12:69753653-69756720:+|nuORF	REV__ENST00000552949.1_1_12:69753653-69756720:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	413.5474	1237.62037	1.4987	0.00061978	6.5125	0.0026932	8.0112	0.003313	413.54898190085294	21.585	0.12047	21.585	21.537	21.657	0	1440	37	0.7506418	0.02225393	0.7506418	456.0085		13.5190735	0	0	0	NaN	6.1406	100	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7313.9	+		6472	12747	3724	3808							0.011064336235222072
FRVSLCHPGW	10	Unmodified	_FRVSLCHPGW_					0	0	0		ENST00000550103.2_1_14:90315160-90397958:-|nuORF	ENST00000550103.2_1_14:90315160-90397958:-|nuORF	ENST00000550103.2_1_14:90315160-90397958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3003928698001	2	601.300393	1200.58623	1.6363	0.00098391	1.9377	0.0011651	3.574	0.0021491	601.803631185005	26.384	0.16892	26.384	26.36	26.529	0	1188	85	0.90571284	0.051417053	0.90571284	366.93665	0	20.830902						226	8	2	NaN	NaN	NaN	0.5917	1	16495	16495		15.463	1.0377	1	27578			6473	7539	3725	3809	5188	5188					-0.00603686069075593
FRYFFRKSS	9	Unmodified	_FRYFFRKSS_					0	0	0		nc|ENSG00000168070|Q3KP22-4|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.22073542223336	3	413.220735	1236.64038	2.0215	0.00083531	-0.37469	-0.00015483	1.6468	0.00068048	413.5549597723743	16.107	0.071987	16.094	16.094	16.166	-0.012611	1452	55	0.74322224	0.033406258	0.7417028	451.50516	0	20.29419						80	4	2	NaN	NaN	NaN	0.56671	1	16722	16722		3.9281	0	1	7177.6			6474	7978	3726	3810	5189	5189					0.03152229354145675
FRYHWIRMS	9	Unmodified	_FRYHWIRMS_					0	0	0		ENST00000373344.9_1_X:76762287-76762440:-|nuORF	ENST00000373344.9_1_X:76762287-76762440:-|nuORF	ENST00000373344.9_1_X:76762287-76762440:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.5537201364	3	432.55372	1294.63933	2.5017	0.0010821	5.4603	0.0023619	7.962	0.003444	432.55441955871026	24.092	0.048271	24.079	24.055	24.103	-0.012749	1395	28	0.7784366	0.016662419	0.77691716	472.66415	0	10.117371						31	3	2	NaN	NaN	NaN	0.62619	1	17838	17838		2.3381	0.48793	1	1830.3			6475	6674	3727	3811	5190	5190					0.003796917135559852
FSAETRKWYS	10	Unmodified	_FSAETRKWYS_					0	0	0		ENST00000419746.5_1_2:179404074-179404299:+|nuORF	ENST00000419746.5_1_2:179404074-179404299:+|nuORF	ENST00000419746.5_1_2:179404074-179404299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.8118446256001	2	637.811845	1273.60914	0.72499	0.00046241	-0.020575	-1.3123E-05	0.70442	0.00044928	637.8110694045529	35.192	0.072372	35.192	35.168	35.241	0	1146	46	0.93142134	0.027519584	0.93142134	377.10617	0	11.141907						83	4	3	NaN	NaN	NaN	0.70677	1	18289	18289		7.5876	0	1	7900.3			6476	6904	3728	3812	5191	5191					-0.016723884706152603
FSAGSSTL	8	Unmodified	_FSAGSSTL_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.3726602647001	1	769.37266	768.365384	1.2583	0.00096812	5.6384	0.004338	6.8967	0.0053062	769.3775424901595	32.104	0.1689	32.104	32.056	32.225	0	525	61	1.3070582	0.035900235	1.3070582	266.4595	0	7.318695						175	8	2	NaN	NaN	NaN	0.77489	1	4338	4338		12.588	0	1	19296	+		6477	10688	3729	3813	5192	5192					-0.028064278447004654
FSAGSSTL	8	Unmodified	_FSAGSSTL_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3726602647001	1	769.37266	768.365384	0.94066	0.00072372	6.3453	0.0048819	7.286	0.0056056	769.3775870938435	32.079	0.14478	32.075	32.051	32.196	-0.0037613	525	61	1.3070582	0.03589642	1.3055388	266.4595	0	7.3179016						171	7	2	NaN	NaN	NaN	0.77489	1	4261	4261		12.588	3.4647	1	21849	+		6478	10688	3729	3813	5193	5193					-0.028064278447004654
FSAGSSTL	8	Unmodified						0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.37266	768.365384	1.2583	0.00096812	5.6384	0.004338	6.8967	0.0053062	769.3775424901595	32.104	0.1689	32.104	32.056	32.225	0	525	61	1.3070582	0.035900235	1.3070582	266.4595		7.318695	0.014508	-0.00027802	0.00075972	NaN	12.588	175	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19296	+		6479	10688	3729	3813							-0.028064278447004654
FSAGSSTL	8	Unmodified						0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	769.37266	768.365384	0.94066	0.00072372	6.3453	0.0048819	7.286	0.0056056	769.3775870938435	32.079	0.14478	32.075	32.051	32.196	-0.0037613	525	61	1.3070582	0.03589642	1.3055388	266.4595		7.3179016	-0.014508	0.00026585	-0.00075972	NaN	12.588	171	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21849	+		6480	10688	3729	3813							-0.028064278447004654
FSAPENAVR	9	Unmodified	_FSAPENAVR_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.75379843045	2	495.753798	989.493044	1.7041	0.00084481	-3.7296	-0.0018489	-2.0255	-0.0010041	495.75209491321743	15.606	0.12012	15.606	15.582	15.702	0	1335	40	0.8154261	0.024015844	0.8154261	331.15787	0	9.753235						93	6	3	NaN	NaN	NaN	0.21199	1	8188	8188		24.562	11.559	1	6822.7			6481	1827	3730	3814	5194	5194					-0.0021228725066748666
FSAPENAVR	9	Unmodified						0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	495.753798	989.493044	1.5188	0.00075297	-2.5895	-0.0012838	-1.0707	-0.00053078	495.7527998914318	15.604	0.071916	15.592	15.568	15.64	-0.012201	1332	43	0.8172735	0.025864601	0.81575406	331.9081		10.504059	-0.0071588	0.00061035	0.00016397	NaN	24.562	96	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9059.2			6482	1827	3730	3814							-0.0021228725066748666
FSAVRNDRLS	10	Unmodified	_FSAVRNDRLS_					0	0	0		ENST00000442697.6_1_4:100820112-100820232:-|nuORF	ENST00000442697.6_1_4:100820112-100820232:-|nuORF	ENST00000442697.6_1_4:100820112-100820232:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.80963628765	2	582.809636	1163.60472	1.616	0.00094183	-7.9259	-0.0046193	-6.3099	-0.0036775	583.3052856604928	32.659	0.072372	32.659	32.659	32.732	0	1209	31	0.892844	0.018391013	0.892844	361.85367	0	7.4535522						54	4	2	NaN	NaN	NaN	0.73444	1	15275	15275		5.6942	0.96509	1	4588.2			6483	7013	3731	3815	5195	5195					0.029461471064678335
FSAVRNDRLS	10	Unmodified						0	0	0		ENST00000442697.6_1_4:100820112-100820232:-|nuORF	ENST00000442697.6_1_4:100820112-100820232:-|nuORF	ENST00000442697.6_1_4:100820112-100820232:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.809636	1163.60472	1.8647	0.0010868	-7.8869	-0.0045966	-6.0222	-0.0035098	583.3067636117058	32.682	0.072388	32.679	32.655	32.727	-0.0031052	1206	37	0.894683	0.022066832	0.89316356	362.599		8.943298	0.0099639	1.955E-05	0.00015978	NaN	5.6942	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3277.6			6484	7013	3731	3815							0.029461471064678335
FSAYNYSSPFF	11	Unmodified	_FSAYNYSSPFF_					0	0	0		ENST00000455814.2_1_6:5240847-5260942:-|nuORF	ENST00000455814.2_1_6:5240847-5260942:-|nuORF	ENST00000455814.2_1_6:5240847-5260942:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.2929533806999	2	665.292953	1328.57135	2.6474	0.0017613	-11.703	-0.007786	-9.0557	-0.0060247	665.2848190957587	37.961	0.096123	37.964	37.94	38.036	0.0034256	1110	31	0.95342636	0.018327594	0.9519069	385.84406	0	7.4170227						39	5	2	NaN	NaN	NaN	0.76937	1	18375	18375		2.1026	0.59717	1	2790.5			6485	7058	3732	3816	5196	5196					-0.07978899456111321
FSCDPCSPDEL	11	Unmodified	_FSCDPCSPDEL_					0	0	0			REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7310140778501	2	606.731014	1211.44748	1.038	0.00062978	1.4047	0.00085226	2.4427	0.001482	606.7325355599628	19.731	0.072184	19.717	19.693	19.765	-0.014141	1206	43	0.894683	0.025747418	0.89316356	362.43115	0	10.430145						140	4	4	NaN	NaN	NaN	0.66717	1	16073	16073		9.6116	0.64966	1	18593	+		6486	13232	3733	3817	5197	5197					-0.14979061610233657
FSCIRHPPSF	10	Unmodified	_FSCIRHPPSF_					0	0	0			REV__nc|ENSG00000107758|P16298-3|PPP3CB	REV__nc|ENSG00000107758|P16298-3|PPP3CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.7924006622	2	595.792401	1189.57025	1.1402	0.00067933	3.314	0.0019745	4.4542	0.0026538	595.7940467359731	24.116	0.096546	24.116	24.068	24.164	0	1173	61	0.91489893	0.036738336	0.91489893	370.69727	0	14.88562						153	5	3	NaN	NaN	NaN	0.37681	1	16138	16138		24.562	1.4762	1	34786	+		6487	9019	3734	3818	5198	5198					-0.01695392306010035
FSDANFVL	8	Unmodified	_FSDANFVL_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4461595588001	1	912.44616	911.438883	0.97088	0.00088587	1.2466	0.0011374	2.2175	0.0020233	912.4468121982045	31.404	0.096527	31.404	31.38	31.477	0	345	52	1.4143922	0.030312777	1.4143922	287.54556	0	6.162567						97	5	2	NaN	NaN	NaN	0.54545	1	6244	6244		28.667	6.5402	1	10974			6488	7902	3735	3819	5199	5199					-0.02037879402234921
FSDANFVL	8	Unmodified	_FSDANFVL_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4461595588001	1	912.44616	911.438883	1.1775	0.0010744	-0.24587	-0.00022435	0.9316	0.00085004	912.4459224408656	31.403	0.12065	31.398	31.35	31.47	-0.0050716	339	49	1.4179583	0.028528094	1.4164388	288.27054	0	5.7997437						116	6	2	NaN	NaN	NaN	0.49126	1	6124	6124		31.561	3.7722	1	11648			6489	7902	3735	3819	5200	5200					-0.02037879402234921
FSDDSDLQL	9	Unmodified	_FSDDSDLQL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.4578464571	1	1039.45785	1038.45057	1.4553	0.0015127	-1.3467	-0.0013999	0.10854	0.00011282	1039.4564683331675	24.647	0.19299	24.647	24.623	24.816	0	192	88	1.5050892	0.051457763	1.5050892	305.42688	0	10.442291						315	9	3	NaN	NaN	NaN	0.013281	1	10121	10121		82.96	41.5	1	40662			6490	476	3736	3820	5201	5201					-0.06711727169545156
FSDDSDLQL	9	Unmodified	_FSDDSDLQL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.4578464571	1	1039.45785	1038.45057	1.1667	0.0012127	-0.49917	-0.00051887	0.66753	0.00069387	1039.4572959336574	24.647	0.12056	24.634	24.634	24.755	-0.012394	192	88	1.5050892	0.051446915	1.5035697	305.42688	0	10.440063						226	6	2	NaN	NaN	NaN	0.074859	1	9914	9914		39.459	14.498	1	32573			6491	476	3736	3820	5202	5202					-0.06711727169545156
FSDEQLVTM	9	Unmodified	_FSDEQLVTM_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.4870380954999	1	1069.48704	1068.47976	0.86117	0.00092101	-9.9729	-0.010666	-9.1118	-0.0097449	1069.4753248760924	29.979	0.16893	29.973	29.973	30.142	-0.0064087	183	55	1.510409	0.031913996	1.5088896	306.39352	0	6.4739075						172	8	3	NaN	NaN	NaN	0.2961	1	11198	11198		19.164	1.3646	1	14018			6492	5114	3737	3821	5203	5203					-0.05173906144932516
FSDEQLVTM	9	Unmodified						0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1069.48704	1068.47976	2.0395	0.0021812	-9.3191	-0.0099667	-7.2796	-0.0077855	1069.476958691629	29.98	0.096539	29.98	29.956	30.053	0	186	61	1.5086359	0.035452366	1.5086359	306.03384		7.191681	0.003666	0.00031549	-0.00012683	NaN	19.164	175	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14701			6493	5114	3737	3821							-0.05173906144932516
FSDMGAWTL	9	Unmodified	_FSDMGAWTL_					0	0	0		nc|ENSG00000143575|O00165-4|HAX1;ENST00000531435.5_1_1:154245130-154246130:+|nuORF;nc|ENSG00000143575|O00165-5|HAX1;nc|ENSG00000143575|O00165-3|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1	nc|ENSG00000143575|O00165-4|HAX1	nc|ENSG00000143575|O00165-4|HAX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.4553440366	1	1027.45534	1026.44807	1.2589	0.0012935	1.5326	0.0015747	2.7915	0.0028682	1027.4584063166697	30.366	0.02413	30.359	30.335	30.359	-0.0064106	204	82	1.4979934	0.047929406	1.496474	304.03354	0	9.727753						67	2	2	NaN	NaN	NaN	0.39244	1	9426	9426		14.042	5.7968	1	7546.9			6494	3438	3738	3822	5204	5204					-0.06409854108210311
FSDPAELGK	9	Unmodified	_FSDPAELGK_					0	0	0		nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	nc|ENSG00000095066|Q96ED9-2|HOOK2	nc|ENSG00000095066|Q96ED9-2|HOOK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4781879687001	1	963.478188	962.470912	1.4662	0.0014126	1.929	0.0018586	3.3952	0.0032712	963.4803464395914	26.891	0.26595	26.891	26.698	26.964	0	261	97	1.4642475	0.056928873	1.4642475	297.4462	0	11.564514						384	12	2	NaN	NaN	NaN	0.23112	1	7397	7397		23.334	0	1	76760			6495	1118	3739	3823	5205	5205					-0.01182511719082413
FSDPSAYIL	9	Unmodified	_FSDPSAYIL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4985890598001	1	1012.49859	1011.49131	1.7347	0.0017563	-0.8242	-0.0008345	0.91045	0.00092183	1012.4979246223994	28.725	0.096531	28.725	28.701	28.798	0	219	73	1.4891195	0.042587996	1.4891195	302.29172	0	8.645355						123	5	2	NaN	NaN	NaN	0.29681	1	9031	9031		19.118	1.3193	1	13917			6496	1664	3740	3824	5206	5206					-0.01397341059282553
FSDPSAYIL	9	Unmodified						0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.49859	1011.49131	1.4605	0.0014787	0.16347	0.00016551	1.624	0.0016443	1012.4980969550876	28.749	0.072378	28.74	28.692	28.765	-0.0083504	216	82	1.4908947	0.04789877	1.4893752	302.65207		9.72348	0.0075204	0.00060893	0.00012786	NaN	19.118	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12935			6497	1664	3740	3824							-0.01397341059282553
FSDPSDTAL	9	Unmodified	_FSDPSDTAL_					0	0	0		ENST00000570484.1_1_17:7147506-7148078:-|nuORF;ENST00000478867.1_1_3:113604431-113604875:+|nuORF;ENSG00000175826|ENST00000574322|CTDNEP1	ENST00000570484.1_1_17:7147506-7148078:-|nuORF	ENST00000570484.1_1_17:7147506-7148078:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4258180471999	1	952.425818	951.418542	1.4462	0.0013774	3.1323	0.0029833	4.5785	0.0043607	952.4287222445976	21.248	0.096354	21.248	21.2	21.296	0	351	67	1.4108255	0.0392344	1.4108255	286.64108	0	7.9713745						118	5	2	NaN	NaN	NaN	0.23112	1	7110	7110		23.334	4.2161	1	13093			6498	5003	3741	3825	5207	5207					-0.05911094852717724
FSDYTPAQV	9	Unmodified	_FSDYTPAQV_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2401895287001	2	514.24019	1026.46583	1.7254	0.00088725	-9.3678	-0.0048173	-7.6424	-0.00393	514.2351612006122	20.429	0.0721	20.429	20.405	20.477	0	1269	40	0.8560222	0.023963928	0.8560222	347.47287	0	9.727356						77	4	2	NaN	NaN	NaN	0.61413	1	9618	9618		4.9097	2.0203	1	9179.3			6499	3366	3742	3826	5208	5208					-0.046348155816986036
FSEDGSTVGIL	11	Unmodified	_FSEDGSTVGIL_					0	0	0		ENST00000361365.6_1_Y:22754233-22754323:+|nuORF	ENST00000361365.6_1_Y:22754233-22754323:+|nuORF	ENST00000361365.6_1_Y:22754233-22754323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.5205162495334	3	375.520516	1123.53972	1.5192	0.00057049	3.6446	0.0013686	5.1638	0.0019391	375.85619229113047	13.108	0.096044	13.108	13.084	13.18	0	1467	28	0.7339432	0.01670587	0.7339432	446.36246	0	10.160004						42	5	2	NaN	NaN	NaN	0.64343	1	13821	13821		5.2847	0	1	2945			6500	6606	3743	3827	5209	5209					-0.01710892210030579
FSEETPVVL	9	Unmodified	_FSEETPVVL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5248038103001	1	1020.5248	1019.51753	2.6091	0.0026626	-2.2669	-0.0023135	0.34213	0.00034915	1020.5224575873895	26.65	0.14483	26.65	26.577	26.722	0	216	112	1.4908947	0.06568098	1.4908947	302.62006	0	13.331848						363	7	3	NaN	NaN	NaN	0.025843	1	9345	9345		64.55	20.248	1	66512			6501	5259	3744	3828	5210	5210					0.008549281121986496
FSEETPVVL	9	Unmodified	_FSEETPVVL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5248038103001	1	1020.5248	1019.51753	1.5548	0.0015867	-0.21224	-0.00021659	1.3426	0.0013701	1020.5249485067596	26.649	0.14482	26.639	26.614	26.759	-0.010645	213	100	1.4926696	0.05857408	1.4911501	302.98032	0	11.889282						337	7	3	NaN	NaN	NaN	0.032764	1	9158	9158		55.494	18.907	1	64110			6502	5259	3744	3828	5211	5211					0.008549281121986496
FSESEKKPY	9	Unmodified	_FSESEKKPY_					0	0	0		NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	NLRP9|p.S305P|1|0.44|ENSG00000185792|chr19:55732918-55732918|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7743964868001	2	557.774396	1113.53424	1.6648	0.00092859	2.1985	0.0012263	3.8633	0.0021549	558.7823184725218	21.826	0.16867	21.826	21.778	21.946	0	1227	91	0.88180584	0.055226803	0.88180584	357.56824	0	22.394196						245	8	3	NaN	NaN	NaN	0.35794	1	13417	13417		15.463	0.28729	1	33646			6503	8076	3745	3829	5212	5212					-0.017985710018365353
FSEYQEPSS	9	Unmodified	_FSEYQEPSS_					0	0	0			REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.22473642975	2	537.224736	1072.43492	1.8038	0.00096906	1.9172	0.00103	3.721	0.001999	537.7262126108684	26.65	0.09654	26.65	26.625	26.722	0	1311	46	0.83019954	0.027686596	0.83019954	336.7998	0	11.232056						79	5	2	NaN	NaN	NaN	0.49672	1	11647	11647		9.746	2.952	1	5290.5	+		6504	13174	3746	3830	5213	5213					-0.09840013686607563
FSEYQEPSS	9	Unmodified						0	0	0			REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.224736	1072.43492	1.8038	0.00096906	1.9172	0.00103	3.721	0.001999	537.7262126108684	26.65	0.09654	26.65	26.625	26.722	0	1311	46	0.83019954	0.027686596	0.83019954	336.7998		11.232056	-0.0065785	-0.0014032	-0.00016317	NaN	9.746	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5290.5	+		6505	13174	3746	3830							-0.09840013686607563
FSFHLAQMH	9	Unmodified	_FSFHLAQMH_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2660187362001	2	559.266019	1116.51748	1.571	0.00087858	4.8274	0.0026998	6.3984	0.0035784	559.2679756891749	15.436	0.21577	15.424	15.28	15.496	-0.012202	1257	61	0.86339295	0.03685367	0.8618735	350.09045	0	14.943512						257	10	4	NaN	NaN	NaN	0.49672	1	13130	13130		9.746	2.2056	1	38236	+		6506	10669	3747	3831	5214	5214					-0.03611350368805688
FSFHLAQMH	9	Unmodified						0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.266019	1116.51748	1.5777	0.00088237	9.731	0.0054422	11.309	0.0063246	559.2712871576057	15.414	0.14422	15.414	15.342	15.486	0	1257	61	0.86339295	0.03684169	0.86339295	350.09042		14.938629	-0.0050243	0.0015785	0.00075972	NaN	9.746	213	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24714	+		6507	10669	3747	3831							-0.03611350368805688
FSFHLAQMH	9	Unmodified						0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.266019	1116.51748	1.571	0.00087858	4.8274	0.0026998	6.3984	0.0035784	559.2679756891749	15.436	0.21577	15.424	15.28	15.496	-0.012202	1257	61	0.86339295	0.03685367	0.8618735	350.09045		14.943512	0.0050243	-0.0039063	-0.00075972	NaN	9.746	257	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38236	+		6508	10669	3747	3831							-0.03611350368805688
FSFLLKPEK	9	Unmodified	_FSFLLKPEK_					0	0	0		tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.21822042426663	3	370.21822	1107.63283	1.7072	0.00063203	-1.9582	-0.00072498	-0.25107	-9.2951E-05	370.21741229182237	19.084	0.11987	19.084	19.012	19.132	0	1449	37	0.74507743	0.022261143	0.74507743	453.2127	0	13.540955						97	6	3	NaN	NaN	NaN	0.40649	1	13192	13192		8.9416	1.9572	1	11522			6509	13792	3748	3832	5215	5215					0.0833207703383323
FSFLLKPEK	9	Unmodified	_FSFLLKPEK_					0	0	0		tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.21822042426663	3	370.21822	1107.63283	1.7591	0.00065125	-0.25348	-9.3844E-05	1.5056	0.0005574	370.2180477228882	19.25	0.12018	19.236	19.164	19.284	-0.014141	1452	37	0.74322224	0.022263587	0.7417028	452.08423	0	13.542419						120	6	3	NaN	NaN	NaN	0.49999	1	12821	12821		6.1406	0.69068	1	12423			6510	13792	3748	3832	5216	5216					0.0833207703383323
FSFNTYVQL	9	Unmodified	_FSFNTYVQL_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7794818647001	2	559.779482	1117.54441	1.3995	0.00078341	-0.56869	-0.00031834	0.83081	0.00046507	559.7788608851856	34.348	0.14466	34.348	34.3	34.445	0	1194	70	0.902037	0.042301655	0.902037	365.75586	0	17.152374						191	7	3	NaN	NaN	NaN	0.44082	1	13580	13580		12.049	2.3027	1	19447			6511	2998	3749	3833	5217	5217					-0.009659632766215509
FSFRGSSS	8	Unmodified	_FSFRGSSS_					0	0	0		ENST00000415861.2_1_6:109688682-109688796:-|nuORF	ENST00000415861.2_1_6:109688682-109688796:-|nuORF	ENST00000415861.2_1_6:109688682-109688796:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4053573766001	1	874.405357	873.398081	1.2683	0.001109	-6.6915	-0.0058511	-5.4232	-0.0047421	874.3992282886005	26.504	0.048248	26.494	26.494	26.542	-0.010645	423	82	1.3679651	0.04825139	1.3664457	278.2871	0	9.815857						86	3	2	NaN	NaN	NaN	0.78967	1	5573	5573		10.605	0	1	6690.9			6512	6882	3750	3834	5218	5218					-0.04368220721846683
FSFSPEPTL	9	Unmodified	_FSFSPEPTL_					0	0	0		ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4985890598	1	1024.49859	1023.49131	2.2666	0.0023221	-10.073	-0.01032	-7.8068	-0.007998	1024.4891667833954	28.412	0.12067	28.412	28.388	28.508	0	216	67	1.4908947	0.039043188	1.4908947	302.6044	0	7.92453						145	6	2	NaN	NaN	NaN	0.13602	1	9491	9491		30.61	5.6491	1	21126			6513	5178	3751	3835	5219	5219					-0.019493410592758664
FSFSPEPTL	9	Unmodified	_FSFSPEPTL_					0	0	0		ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	ENST00000565758.1_1_16:30441199-30441310:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.4985890598	1	1024.49859	1023.49131	1.2962	0.0013279	-9.0977	-0.0093206	-7.8015	-0.0079926	1024.4876326605595	28.435	0.21719	28.426	28.354	28.571	-0.0089798	213	103	1.4926696	0.060371518	1.4911501	302.96466	0	12.253479						274	10	3	NaN	NaN	NaN	0.23112	1	9302	9302		23.334	9.2928	1	24768			6514	5178	3751	3835	5220	5220					-0.019493410592758664
FSGDSGGA	8	Unmodified	_FSGDSGGA_					0	0	0			REV__ENST00000527346.5_1_11:44099320-44099404:+|nuORF	REV__ENST00000527346.5_1_11:44099320-44099404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	349.14301817305005	2	349.143018	696.271483	1.8681	0.00065224	1.7656	0.00061643	3.6337	0.0012687	349.14374513882854	21.922	0.1445	21.908	21.884	22.028	-0.013897	1488	31	0.7209441	0.018577218	0.71942466	294.4714	0	7.5878906						87	7	2	NaN	NaN	NaN	0.84692	1	3095	3095		1.4396	0	1	6247.4	+		6515	12631	3752	3836	5221	5221					-0.08880146946978584
FSGEKQQDN	9	Unmodified	_FSGEKQQDN_					0	0	0			REV__TET2|p.R771K|1|0.07|ENSG00000168769|chr4:105236254-105236254|G/A|missense_variant	REV__TET2|p.R771K|1|0.07|ENSG00000168769|chr4:105236254-105236254|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4643288185	1	1052.46433	1051.45705	2.1412	0.0022536	7.5692	0.0079663	9.7104	0.01022	1052.4725761114137	29.594	0.24139	29.594	29.474	29.715	0	144	67	1.533442	0.038960457	1.533442	311.13004	0	7.9049377						376	11	3	NaN	NaN	NaN	0.2961	1	10674	10674		19.164	5.122	1	49915	+		6516	13369	3753	3837	5222	5222					-0.06661789218173908
FSGEKQQDN	9	Unmodified						0	0	0			REV__TET2|p.R771K|1|0.07|ENSG00000168769|chr4:105236254-105236254|G/A|missense_variant	REV__TET2|p.R771K|1|0.07|ENSG00000168769|chr4:105236254-105236254|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.46433	1051.45705	2.1412	0.0022536	7.5692	0.0079663	9.7104	0.01022	1052.4725761114137	29.594	0.24139	29.594	29.474	29.715	0	144	67	1.533442	0.038960457	1.533442	311.13004		7.9049377	0.0039562	-0.00028374	-0.00012551	NaN	19.164	376	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49915	+		6517	13369	3753	3837							-0.06661789218173908
FSGPAITL	8	Unmodified	_FSGPAITL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B;ENST00000466379.1_1_1:10189503-10195243:+|nuORF	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4454312773001	1	805.445431	804.438155	1.3404	0.0010796	-1.4784	-0.0011908	-0.13804	-0.00011119	805.4444481238381	27.132	0.12065	27.122	27.098	27.218	-0.010126	519	64	1.310647	0.03768921	1.3091276	266.98087	0	7.677368						165	6	3	NaN	NaN	NaN	0.23746	1	4708	4708		47.04	11.004	1	16730			6518	2681	3754	3838	5223	5223					0.028113259487213327
FSGPAITL	8	Unmodified						0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B;ENST00000466379.1_1_1:10189503-10195243:+|nuORF	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	805.445431	804.438155	1.6675	0.0013431	-1.0053	-0.00080975	0.66216	0.00053333	805.4445275194403	27.109	0.096525	27.109	27.084	27.181	0	522	61	1.3088527	0.03589642	1.3088527	266.61536		7.3121643	-0.0066132	0.0001806	-0.00013745	NaN	47.04	158	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18929			6519	2681	3754	3838							0.028113259487213327
FSGPDLLLSI	10	Unmodified	_FSGPDLLLSI_					0	0	0			REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2975074423501	2	531.297507	1060.58046	1.7181	0.00091284	-2.2566	-0.001199	-0.53851	-0.00028611	531.2959597452716	34.614	0.096527	34.614	34.589	34.686	0	1269	46	0.8560222	0.027641773	0.8560222	347.32492	0	11.215454						121	5	3	NaN	NaN	NaN	0.2358	1	11138	11138		32.453	0	1	12278	+		6520	9162	3755	3839	5224	5224					0.05259493900257439
FSGPDLLLSI	10	Unmodified	_FSGPDLLLSI_					0	0	0			REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2975074423501	2	531.297507	1060.58046	0.80383	0.00042707	-2.5325	-0.0013455	-1.7287	-0.00091844	531.296225757556	34.612	0.12057	34.612	34.563	34.684	-0.00064468	1266	43	0.85786515	0.025797546	0.8563457	348.0727	0	10.467163						126	6	3	NaN	NaN	NaN	0.2358	1	10888	10888		32.453	3.5572	1	12765	+		6521	9162	3755	3839	5225	5225					0.05259493900257439
FSGPDLLLSI	10	Unmodified						0	0	0			REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.297507	1060.58046	1.7181	0.00091284	-2.2566	-0.001199	-0.53851	-0.00028611	531.2959597452716	34.614	0.096527	34.614	34.589	34.686	0	1269	46	0.8560222	0.027641773	0.8560222	347.32492		11.215454	0.00097822	0.00011908	-0.00016177	NaN	32.453	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12278	+		6522	9162	3755	3839							0.05259493900257439
FSGPDLLLSI	10	Unmodified						0	0	0			REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	REV__ENST00000475214.5_1_3:135974226-136045892:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.297507	1060.58046	0.80383	0.00042707	-2.5325	-0.0013455	-1.7287	-0.00091844	531.296225757556	34.612	0.12057	34.612	34.563	34.684	-0.00064468	1266	43	0.85786515	0.025797546	0.8563457	348.0727		10.467163	-0.00097822	-0.00017404	0.00016177	NaN	32.453	126	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12765	+		6523	9162	3755	3839							0.05259493900257439
FSGPGLCC	8	Unmodified	_FSGPGLCC_					0	0	0			REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.3164077142	1	783.316408	782.309131	1.5123	0.0011846	3.7295	0.0029214	5.2418	0.004106	783.319703025563	39.042	0.1926	39.047	38.927	39.119	0.0046806	666	79	1.2224985	0.046880245	1.2209791	249.14307	0	9.554108						278	9	3	NaN	NaN	NaN	0.84651	1	4437	4437		1.6704	0.2308	1	31202	+		6524	12299	3756	3840	5226	5226					-0.0907309527739244
FSGQPPGP	8	Unmodified	_FSGQPPGP_					0	0	0		ENST00000506409.1_1_4:17616277-17621640:+|nuORF;ENSG00000118579|ENST00000237380|MED28	ENST00000506409.1_1_4:17616277-17621640:+|nuORF	ENST00000506409.1_1_4:17616277-17621640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.6926782301	2	393.692678	785.370804	1.8108	0.00071289	-10.214	-0.0040212	-8.4034	-0.0033084	393.688493206351	32.73	0.072418	32.727	32.703	32.776	-0.0031052	1443	28	0.7487872	0.016691387	0.7472678	305.1759	0	6.8027344						41	4	2	NaN	NaN	NaN	0.84512	1	4483	4483		2.4615	0	1	2823.7			6525	2186	3757	3841	5227	5227					-0.03046704262237654
FSGRMSDLS	9	Unmodified	_FSGRMSDLS_					0	0	0		ENST00000513016.5_1_5:82832752-82876250:+|nuORF	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.23184156785004	2	500.231842	998.44913	1.885	0.00094296	-1.6917	-0.00084627	0.19329	9.6688E-05	500.23108560329143	25.395	0.096544	25.395	25.371	25.467	0	1335	52	0.8154261	0.031398535	0.8154261	331.11713	0	12.749908						104	5	3	NaN	NaN	NaN	0.31737	1	8510	8510		17.799	3.7574	1	9409.2			6526	7364	3758	3842	5228	5228					-0.05015639739303879
FSGSAGRRR	9	Unmodified	_FSGSAGRRR_					0	0	0		ENST00000229395.7_1_12:27091398-27091527:+|nuORF	ENST00000229395.7_1_12:27091398-27091527:+|nuORF	ENST00000229395.7_1_12:27091398-27091527:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.5336862082002	1	993.533686	992.52641	1.9189	0.0019065	-9.9915	-0.0099269	-8.0727	-0.0080205	993.5244464580793	28.87	0.072397	28.87	28.846	28.918	0	222	49	1.4873441	0.028410077	1.4873441	302.00894	0	5.768738						64	4	2	NaN	NaN	NaN	0.47587	1	8319	8319		10.605	0.85897	1	5378.1			6527	6246	3759	3843	5229	5229					0.029847593119029625
FSGYGHIW	8	Unmodified	_FSGYGHIW_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4468282608001	1	966.446828	965.439552	0.99284	0.00095953	-7.0736	-0.0068363	-6.0808	-0.0058768	966.4416466221477	29.883	0.14478	29.876	29.779	29.924	-0.0070667	279	88	1.4535767	0.051589012	1.4520572	295.26578	0	10.479309						192	7	2	NaN	NaN	NaN	0.66957	1	7337	7337		20.952	1.8342	1	16465			6528	1778	3760	3844	5230	5230					-0.04455039962522278
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	351.8540526237	3	351.854053	1052.54033	1.7513	0.00061619	-5.6277	-0.0019801	-3.8764	-0.0013639	351.85328107754617	15.582	0.19214	15.582	15.51	15.702	0	1488	49	0.7209441	0.029723525	0.7209441	438.81448	0	18.091705						190	9	2	NaN	NaN	NaN	0.36163	1	10742	10742		15.311	2.2098	1	31631			6529	4106	3761	3845	5231	5231					0.016159920203108413
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.27744070225	2	527.277441	1052.54033	1.7573	0.0009266	-1.3431	-0.0007082	0.4142	0.0002184	527.2764687415431	15.582	0.21615	15.582	15.486	15.702	0	1272	118	0.854179	0.07187641	0.854179	346.611	0	29.166168						644	10	4	NaN	NaN	NaN	0.012223	1	10744	10744		87.778	37.817	1	91190			6530	4106	3761	3845	5232	5232					0.016159920203108413
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	351.8540526237	3	351.854053	1052.54033	2.1341	0.00075088	-2.9955	-0.001054	-0.86143	-0.0003031	351.85325387846467	15.676	0.21575	15.663	15.567	15.783	-0.012611	1485	52	0.72280174	0.03158295	0.7212823	439.94516	0	19.22345						175	10	2	NaN	NaN	NaN	0.37272	1	10517	10517		14.854	5.9349	1	32069			6531	4106	3761	3845	5233	5233					0.016159920203108413
FSHPREPAL	9	Unmodified	_FSHPREPAL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.27744070225	2	527.277441	1052.54033	1.7474	0.00092138	-0.7496	-0.00039525	0.99783	0.00052613	527.2772002396949	15.676	0.23972	15.663	15.567	15.807	-0.012611	1275	115	0.85233563	0.07002199	0.8508162	345.86298	0	28.413727						519	11	2	NaN	NaN	NaN	0.033694	1	10518	10518		60.984	13.502	1	95924			6532	4106	3761	3845	5234	5234					0.016159920203108413
FSHVGAGV	8	Unmodified	_FSHVGAGV_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.3940644088002	1	773.394064	772.386788	1.1184	0.00086499	-5.5309	-0.0042775	-4.4124	-0.0034125	773.3906326039772	32.296	0.096546	32.292	32.268	32.365	-0.0037613	534	52	1.3016734	0.030516744	1.300154	265.33755	0	6.2206726						145	5	3	NaN	NaN	NaN	0.69631	1	4312	4312		19.285	4.2718	1	11251			6533	3358	3762	3846	5235	5235					-0.008509980253279537
FSIDIHPDGT	10	Unmodified	_FSIDIHPDGT_					0	0	0		HIRA|p.V19I|1|0.23|ENSG00000100084|chr22:19410761-19410761|C/T|missense_variant	HIRA|p.V19I|1|0.23|ENSG00000100084|chr22:19410761-19410761|C/T|missense_variant	HIRA|p.V19I|1|0.23|ENSG00000100084|chr22:19410761-19410761|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.26419594125	2	551.264196	1100.51384	1.5399	0.00084888	1.9601	0.0010806	3.5	0.0019294	551.2658589486362	19.779	0.096277	19.765	19.741	19.837	-0.014141	1245	43	0.87076044	0.02576971	0.869241	353.14047	0	10.451019						68	5	3	NaN	NaN	NaN	0.53991	1	12523	12523		17.799	3.374	1	9803			6534	7818	3763	3847	5236	5236					-0.03239741661673179
FSILPFYQTF	10	Unmodified	_FSILPFYQTF_					0	0	0		tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.8264320572999	2	631.826432	1261.63831	1.5185	0.00095944	1.5342	0.00096933	3.0527	0.0019288	631.8271292408872	24.116	0.19303	24.103	24.055	24.248	-0.012749	1125	91	0.9442611	0.055024385	0.94274163	382.3435	0	22.28009						382	9	4	NaN	NaN	NaN	0.31086	1	17253	17253		27.296	1.1813	1	79107			6535	13724	3764	3848	5237	5237					0.017957558256284756
FSILPFYQTF	10	Unmodified						0	0	0		tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	631.826432	1261.63831	1.6361	0.0010337	1.2048	0.00076122	2.8409	0.0017949	632.3291414755487	24.092	0.21722	24.092	24.019	24.237	0	1125	91	0.9442611	0.055024385	0.9442611	382.3435		22.28009	-0.005599	-0.00017808	0.00075972	NaN	27.296	456	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82435			6536	13724	3764	3848							0.017957558256284756
FSISESMKP	9	Unmodified	_FSISESMKP_					0	0	0		ENST00000479853.1_1_7:96772106-96810524:+|nuORF;ENST00000360382.4_1_7:96765722-96810524:+|nuORF;ENSG00000196636|ENST00000432641|SDHAF3	ENST00000479853.1_1_7:96772106-96810524:+|nuORF	ENST00000479853.1_1_7:96772106-96810524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2522426589501	2	513.252243	1024.48993	0.93195	0.00047833	-6.7358	-0.0034572	-5.8038	-0.0029788	513.2493201340495	31.114	0.096546	31.109	31.06	31.157	-0.0050716	1314	76	0.8283535	0.046149373	0.8268341	336.2503	0	18.733215						148	5	2	NaN	NaN	NaN	0.56671	1	9364	9364		6.8632	0	1	16372			6537	5646	3765	3849	5238	5238					-0.021332984196760663
FSISIHYSGW	10	Unmodified	_FSISIHYSGW_					0	0	0		tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.790380902	2	598.790381	1195.56621	0.34848	0.00020866	-7.8354	-0.0046918	-7.4869	-0.0044831	598.7853339659238	31.524	0.12068	31.519	31.471	31.592	-0.0044174	1230	64	0.8799654	0.03863156	0.878446	356.52252	0	15.651794						128	6	3	NaN	NaN	NaN	0.74182	1	15683	15683		5.1889	0.27914	1	12919			6538	13814	3766	3850	5239	5239					-0.02375158528047905
FSISIHYSGW	10	Unmodified						0	0	0		tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	tr|U7SQX4|U7SQX4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01617PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.790381	1195.56621	0.54501	0.00032635	-7.971	-0.004773	-7.426	-0.0044466	598.785806066925	31.525	0.1207	31.525	31.501	31.621	0	1233	40	0.87812483	0.023927689	0.87812483	355.7768		9.6944275	0.0027309	-7.8375E-05	-0.00016058	NaN	5.1889	136	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13416			6539	13814	3766	3850							-0.02375158528047905
FSKLTSRFT	9	Unmodified	_FSKLTSRFT_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.80074862305	2	543.800749	1085.58694	1.6862	0.00091696	-2.8051	-0.0015254	-1.1189	-0.00060845	543.7985771448778	26.287	0.12062	26.276	26.252	26.373	-0.011137	1197	64	0.9001988	0.038623214	0.8986794	365.1414	0	15.666473						143	6	3	NaN	NaN	NaN	0.21451	1	11902	11902		24.4	3.9516	1	15842			6540	4475	3767	3851	5240	5240					0.04757431851612637
FSKLTSRFT	9	Unmodified						0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.800749	1085.58694	1.921	0.0010447	-1.4513	-0.00078924	0.46969	0.00025542	543.799881267253	26.263	0.1448	26.263	26.239	26.384	0	1197	49	0.9001988	0.029419243	0.9001988	365.1414		11.933136	-0.0063896	0.00049236	0.00075972	NaN	24.4	108	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15389			6541	4475	3767	3851							0.04757431851612637
FSLAPGESTL	10	Unmodified	_FSLAPGESTL_					0	0	0			REV__ENST00000579192.5_1_17:8198292-8198649:-|nuORF	REV__ENST00000579192.5_1_17:8198292-8198649:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.263664625	2	511.263665	1020.51278	1.3274	0.00067863	-1.574	-0.00080471	-0.2466	-0.00012608	511.26360916684666	14.332	0.11974	14.321	14.297	14.417	-0.011218	1299	49	0.8375814	0.029530823	0.83606195	340.01367	0	11.987946						79	6	2	NaN	NaN	NaN	0.56921	1	9195	9195		16.584	3.1211	1	6259.5	+		6542	12863	3768	3852	5241	5241					0.003340439694284214
FSLCFCKNPM	10	Unmodified	_FSLCFCKNPM_					0	0	0		MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.26377286045	2	595.263773	1188.51299	1.2915	0.0007688	-9.1682	-0.0054575	-7.8767	-0.0046887	595.2579462370849	28.532	0.14481	28.532	28.484	28.629	0	1167	85	0.91857195	0.05145037	0.91857195	372.18936	0	20.846802						254	7	3	NaN	NaN	NaN	0.64158	1	16098	16098		12.049	2.4371	1	20734			6543	7878	3769	3853	5242	5242					-0.07372318898251251
FSLIKKRF	8	Unmodified	_FSLIKKRF_					0	0	0		nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1	nc|ENSG00000118473|Q9BQI5-4|SGIP1	nc|ENSG00000118473|Q9BQI5-4|SGIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.8265694430501	2	519.826569	1037.63859	1.1455	0.00059547	-8.6461	-0.0044945	-7.5006	-0.003899	519.8223423893373	29.835	0.096491	29.828	29.755	29.852	-0.0070667	1209	52	0.892844	0.03126979	0.8913246	362.3678	0	12.691071						85	5	2	NaN	NaN	NaN	0.81251	1	9907	9907		7.5404	0	1	9811.3			6544	2177	3770	3854	5243	5243					0.12127220336174105
FSLLFDFIL	9	Unmodified	_FSLLFDFIL_					0	0	0			REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8127933658001	2	557.812793	1113.61103	1.0861	0.00060582	-9.4068	-0.0052473	-8.3208	-0.0046414	558.3089293754335	28.435	0.16893	28.426	28.33	28.499	-0.0089798	1218	52	0.8873258	0.03126979	0.8858064	359.8063	0	12.679749						188	8	3	NaN	NaN	NaN	0.36492	1	13058	13058		15.175	2.5875	1	23096	+		6545	13607	3771	3855	5244	5244					0.05877272285283652
FSLLFDFIL	9	Unmodified						0	0	0			REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.812793	1113.61103	1.5688	0.00087508	-4.4778	-0.0024978	-2.909	-0.0016227	557.8129915921055	28.412	0.16893	28.412	28.339	28.508	0	1221	76	0.885486	0.045984983	0.885486	359.06027		18.646667	-0.0072459	0.0031267	-0.00016018	NaN	15.175	246	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35174	+		6546	13607	3771	3855							0.05877272285283652
FSLLFDFIL	9	Unmodified						0	0	0			REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	REV__tr|U7T4Y7|U7T4Y7_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00608PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.812793	1113.61103	1.0861	0.00060582	-9.4068	-0.0052473	-8.3208	-0.0046414	558.3089293754335	28.435	0.16893	28.426	28.33	28.499	-0.0089798	1218	52	0.8873258	0.03126979	0.8858064	359.8063		12.679749	0.0072459	-0.0023723	0.00016018	NaN	15.175	188	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23096	+		6547	13607	3771	3855							0.05877272285283652
FSLPFTDFVP	10	Unmodified	_FSLPFTDFVP_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.29750744235	2	585.297507	1168.58046	1.9669	0.0011512	-4.645	-0.0027187	-2.6781	-0.0015675	585.293240934618	26.529	0.31368	26.518	26.397	26.711	-0.010645	1191	142	0.90387505	0.08638656	0.9023556	366.30606	0	35.009186						1090	14	6	NaN	NaN	NaN	0.20271	1	14904	14904		35.296	0.85769	1	602030			6548	3181	3772	3856	5245	5245					0.002914939002266692
FSLPFTDFVP	10	Unmodified						0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.297507	1168.58046	1.9815	0.0011598	0.5166	0.00030236	2.4981	0.0014621	585.8022371862495	26.65	0.072401	26.65	26.625	26.698	0	1191	109	0.90387505	0.06620771	0.90387505	366.30603		26.831451	0.06581	0.0048925	0.00075972	NaN	35.296	227	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73214			6549	3181	3772	3856							0.002914939002266692
FSLTHCVESP	10	Unmodified	_FSLTHCVESP_					0	0	0			REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2605990073001	2	560.260599	1118.50665	1.1349	0.00063586	6.4233	0.0035987	7.5582	0.0042346	560.2645070882567	31.356	0.24133	31.356	31.308	31.549	0	1209	76	0.892844	0.045994937	0.892844	362.02448	0	18.64972						470	11	4	NaN	NaN	NaN	0.15427	1	13605	13605		39.459	2.8723	1	231580	+		6550	12772	3773	3857	5246	5246					-0.047867975337339885
FSLTIGTLL	9	Unmodified	_FSLTIGTLL_					0	0	0			REV__ENSG00000148942|ENST00000396005|SLC5A12	REV__ENSG00000148942|ENST00000396005|SLC5A12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5713600724001	1	964.57136	963.564084	1.3113	0.0012649	0.94935	0.00091572	2.2607	0.0021806	964.5722550856791	34.252	0.16884	34.252	34.203	34.372	0	126	58	1.544062	0.033620834	1.544062	313.65463	0	6.8296204						175	8	2	NaN	NaN	NaN	0.10956	1	7452	7452		34.439	0.74048	1	25529	+		6551	9987	3774	3858	5247	5247					0.08084412734137914
FSLVYRFI	8	Unmodified	_FSLVYRFI_					0	0	0			REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7974776526	2	522.797478	1043.5804	0.98289	0.00051385	7.8513	0.0041046	8.8342	0.0046185	522.8015791477302	30.269	0.21714	30.263	30.19	30.407	-0.0064106	1275	49	0.85233563	0.029492497	0.8508162	345.90128	0	11.968872						170	10	2	NaN	NaN	NaN	0.69898	1	10164	10164		19.118	1.338	1	26419	+		6552	10079	3775	3859	5248	5248					0.060355386908895525
FSLVYRFI	8	Unmodified						0	0	0			REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.797478	1043.5804	1.6072	0.00084022	7.8352	0.0040962	9.4423	0.0049364	522.8012065990786	30.222	0.16893	30.222	30.149	30.318	0	1278	46	0.85049206	0.027653694	0.85049206	345.1531		11.222656	-0.020444	-4.9044E-06	-0.00016207	NaN	19.118	185	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29560	+		6553	10079	3775	3859							0.060355386908895525
FSLVYRFI	8	Unmodified						0	0	0			REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	522.797478	1043.5804	0.98289	0.00051385	7.8513	0.0041046	8.8342	0.0046185	522.8015791477302	30.269	0.21714	30.263	30.19	30.407	-0.0064106	1275	49	0.85233563	0.029492497	0.8508162	345.90128		11.968872	0.020444	1.1965E-05	0.00016207	NaN	19.118	170	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26419	+		6554	10079	3775	3859							0.060355386908895525
FSLYWGTG	8	Unmodified	_FSLYWGTG_					0	0	0			REV__ENST00000477642.5_1_2:38525235-38525295:-|nuORF	REV__ENST00000477642.5_1_2:38525235-38525295:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.72143566955003	2	465.721436	929.428318	0.7714	0.00035926	2.5161	0.0011718	3.2875	0.0015311	465.7225478843024	12.412	0.047913	12.412	12.388	12.436	0	1380	37	0.7876915	0.02220571	0.7876915	320.17764	0	9.026093						57	3	2	NaN	NaN	NaN	0.78264	1	6577	6577		11.548	0	1	6177.4	+		6555	12361	3776	3860	5249	5249					-0.03921862056665759
FSMFDPIVF	9	Unmodified	_FSMFDPIVF_					0	0	0			REV__ENST00000469774.1_1_2:191760380-191769916:+|nuORF	REV__ENST00000469774.1_1_2:191760380-191769916:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5277806981999	1	1102.52778	1101.5205	0.89586	0.00098771	0.89748	0.00098949	1.7933	0.0019772	1102.5287260874222	37.795	0.21632	37.795	37.747	37.963	0	63	115	1.5811787	0.06716704	1.5811787	320.62674	0	13.619934						331	10	2	NaN	NaN	NaN	0.078597	1	12898	12898		38.918	6.4651	1	30108	+		6556	9190	3777	3861	5250	5250					-0.026195200346592173
FSNGNADKVH	10	Unmodified	_FSNGNADKVH_					0	0	0			REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7596120898501	2	544.759612	1087.50467	1.5694	0.00085493	-5.9977	-0.0032673	-4.4284	-0.0024124	544.7564147318707	26.65	0.26597	26.65	26.625	26.891	0	1227	85	0.88180584	0.051550567	0.88180584	357.67288	0	20.909607						353	12	2	NaN	NaN	NaN	0.22448	1	12265	12265		33.425	1.8643	1	84357	+		6557	9470	3778	3862	5251	5251					-0.03558090227329558
FSNINSPPITE	11	Unmodified	_FSNINSPPITE_					0	0	0			REV__IMPG2|p.P546_S547insPSNINSF|1|0.07|ENSG00000081148|chr3:101244692-101244693|-/AAAAGAGTTAATATTTGACGG|inframe_insertion	REV__IMPG2|p.P546_S547insPSNINSF|1|0.07|ENSG00000081148|chr3:101244692-101244693|-/AAAAGAGTTAATATTTGACGG|inframe_insertion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.8036852425001	2	609.803685	1217.59282	1.1578	0.00070603	3.4286	0.0020907	4.5864	0.0027968	609.8073780371459	26.698	0.1694	26.698	26.674	26.843	0	1149	85	0.92958635	0.051389337	0.92958635	376.5489	0	20.816345						298	8	3	NaN	NaN	NaN	0.62612	1	16931	16931		12.307	0.25799	1	50515	+		6558	13023	3779	3863	5252	5252					-0.007275144273535261
FSNKNQDKLW	10	Unmodified	_FSNKNQDKLW_					0	0	0			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.21917160643335	3	427.219172	1278.63569	1.4806	0.00063255	-3.4944	-0.0014929	-2.0138	-0.00086034	427.2180575880413	22.573	0.12062	22.573	22.549	22.67	0	1386	37	0.78399014	0.022210538	0.78399014	476.0991	0	13.487976						104	6	3	NaN	NaN	NaN	0.77144	1	18392	18392		1.1021	0.38596	1	10905	+		6559	9478	3780	3864	5253	5253					0.007513004207112317
FSNNDGHYVNK	11	Unmodified	_FSNNDGHYVNK_					0	0	0			REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.7941831887	2	647.794183	1293.57381	1.368	0.00088617	-5.9244	-0.0038378	-4.5564	-0.0029516	647.7902609951875	35.48	0.024109	35.481	35.481	35.505	0.00052643	1131	31	0.94059354	0.018341422	0.93907416	380.7567	0	7.424713						41	2	2	NaN	NaN	NaN	0.6875	1	17809	17809		8.2775	2.5834	1	4015.5	+		6560	12613	3781	3865	5254	5254					-0.06123050998439794
FSNNDGHYVNK	11	Unmodified						0	0	0			REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	647.794183	1293.57381	1.368	0.00088617	-5.9244	-0.0038378	-4.5564	-0.0029516	647.7902609951875	35.48	0.024109	35.481	35.481	35.505	0.00052643	1131	31	0.94059354	0.018341422	0.93907416	380.7567		7.424713	0.059826	-0.00019818	0.0010744	NaN	8.2775	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4015.5	+		6561	12613	3781	3865							-0.06123050998439794
FSNRRAKWRRQ	11	Unmodified	_FSNRRAKWRRQ_					0	0	0		nc|ENSG00000106331|O43316-2|PAX4;nc|ENSG00000106331|O43316-4|PAX4;nc|ENSG00000106331|O43316|PAX4;ENSG00000106331|ENST00000639438|PAX4	nc|ENSG00000106331|O43316-2|PAX4	nc|ENSG00000106331|O43316-2|PAX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.9214493878	2	752.921449	1503.82835	1.4364	0.0010815	-7.0259	-0.0052899	-5.5895	-0.0042085	752.917754223486	36.832	0.072231	36.832	36.808	36.88	0	972	37	1.0375156	0.021886826	1.0375156	419.3702	0	8.846771						53	4	2	NaN	NaN	NaN	0.63477	1	20598	20598		11.739	1.3787	1	4024.2			6562	1596	3782	3866	5255	5255					0.09658480331222563
FSNRRAKWRRQ	11	Unmodified						0	0	0		nc|ENSG00000106331|O43316-2|PAX4;nc|ENSG00000106331|O43316-4|PAX4;nc|ENSG00000106331|O43316|PAX4;ENSG00000106331|ENST00000639438|PAX4	nc|ENSG00000106331|O43316-2|PAX4	nc|ENSG00000106331|O43316-2|PAX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	752.921449	1503.82835	1.8961	0.0014276	-8.4076	-0.0063303	-6.5115	-0.0049026	752.9134110461089	36.854	0.072189	36.856	36.808	36.88	0.0022507	972	40	1.0375156	0.023709416	1.0359962	419.3702		9.583496	0.012107	-0.0010534	-0.00075972	NaN	11.739	69	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4340.1			6563	1596	3782	3866							0.09658480331222563
FSNWDISFVSD	11	Unmodified	_FSNWDISFVSD_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|56	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|56	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.79331752145	2	658.793318	1315.57208	1.4836	0.00097738	-2.7391	-0.0018045	-1.2555	-0.0008271	658.792122864972	19.9	0.26472	19.885	19.837	20.102	-0.014141	1077	43	0.9735726	0.025625527	0.9720532	394.0371	0	10.37146						322	12	4	NaN	NaN	NaN	0.61402	1	18194	18194		13.101	4.1821	1	40252	+		6564	8204	3783	3867	5256	5256					-0.07308104807043492
FSNWDISFVSD	11	Unmodified						0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|56	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|56	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	658.793318	1315.57208	1.4836	0.00097738	-2.7391	-0.0018045	-1.2555	-0.0008271	658.792122864972	19.9	0.26472	19.885	19.837	20.102	-0.014141	1077	43	0.9735726	0.025625527	0.9720532	394.0371		10.37146	0.0045881	-3.1709E-05	-0.00075972	NaN	13.101	322	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40252	+		6565	8204	3783	3867							-0.07308104807043492
FSPDEGWWF	9	Unmodified	_FSPDEGWWF_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.7481817363	2	585.748182	1169.48181	1.2996	0.00076123	0.35443	0.0002076	1.654	0.00096884	585.7486348170876	22.621	0.096478	22.607	22.583	22.68	-0.01354	1173	43	0.91489893	0.025716841	0.9133795	370.77026	0	10.421967						123	5	3	NaN	NaN	NaN	0.56671	1	14921	14921		6.8632	2.8947	1	21092	+		6566	9038	3784	3868	5257	5257					-0.09615109344827033
FSPDEGWWF	9	Unmodified						0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.748182	1169.48181	1.2996	0.00076123	0.35443	0.0002076	1.654	0.00096884	585.7486348170876	22.621	0.096478	22.607	22.583	22.68	-0.01354	1173	43	0.91489893	0.025716841	0.9133795	370.77026		10.421967	0.017074	0.001253	-0.00075972	NaN	6.8632	123	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21092	+		6567	9038	3784	3868							-0.09615109344827033
FSPPGNPM	8	Unmodified	_FSPPGNPM_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-3|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-3|BAZ2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.3814508120001	1	846.381451	845.374174	1.5593	0.0013197	4.5048	0.0038128	6.0641	0.0051325	846.3854963081837	32.345	0.26546	32.345	32.273	32.539	0	447	97	1.3536539	0.057299614	1.3536539	275.51718	0	11.662537						573	12	4	NaN	NaN	NaN	0.75561	1	5327	5327		15.175	1.1338	1	114030	+		6568	8619	3785	3869	5258	5258					-0.05469777479879667
FSPRYRFA	8	Unmodified	_FSPRYRFA_					0	0	0			REV__ZNF440|p.F502Lfs*4|1|0.23|ENSG00000171295|chr19:11832679-11832679|T/-|frameshift_variant	REV__ZNF440|p.F502Lfs*4|1|0.23|ENSG00000171295|chr19:11832679-11832679|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5421256295	1	1043.54213	1042.53485	2.0368	0.0021255	1.7642	0.001841	3.801	0.0039665	1043.5450957395767	26.36	0.096527	26.36	26.336	26.432	0	153	70	1.5281296	0.040729165	1.5281296	310.08652	0	8.264709						135	5	2	NaN	NaN	NaN	0.67593	1	10328	10328		20.555	1.3919	1	21453	+		6569	10617	3786	3870	5259	5259					0.015283132285276224
FSPSISHAH	9	Unmodified	_FSPSISHAH_					0	0	0		nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4741056438002	1	982.474106	981.466829	1.5061	0.0014797	-7.5855	-0.0074525	-6.0794	-0.0059728	982.4662473052288	35.82	0.072342	35.82	35.82	35.892	0	210	82	1.4944444	0.047954798	1.4944444	303.4975	0	9.738831						74	4	2	NaN	NaN	NaN	0.29681	1	7929	7929		19.118	5.6553	1	5483.1			6570	7908	3787	3871	5260	5260					-0.024645564221373206
FSPSISHAH	9	Unmodified						0	0	0		nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	982.474106	981.466829	1.6005	0.0015725	-6.514	-0.0063998	-4.9135	-0.0048273	982.4680018930577	35.818	0.072296	35.819	35.794	35.867	0.00052643	210	43	1.4944444	0.024848342	1.4929249	303.4975		5.046295	-0.00050888	0.00062835	-0.00075972	NaN	19.118	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5910.5			6571	7908	3787	3871							-0.024645564221373206
FSPTVFSTHL	10	Unmodified	_FSPTVFSTHL_					0	0	0			REV__ENST00000479118.1_1_X:122318417-122387488:+|nuORF	REV__ENST00000479118.1_1_X:122318417-122387488:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2927564154501	2	568.292756	1134.57096	1.7234	0.00097941	1.7963	0.0010208	3.5197	0.0020002	568.293609976424	27.036	0.28956	27.036	26.964	27.253	0	1200	61	0.89836043	0.03676611	0.89836043	364.19846	0	14.905121						453	13	5	NaN	NaN	NaN	0.44258	1	14266	14266		21.835	1.3863	1	125800	+		6572	9400	3788	3872	5261	5261					0.009057256147116277
FSQEKEFVEA	10	Unmodified	_FSQEKEFVEA_					0	0	0			REV__ENST00000425785.1_1_1:98011504-98011909:+|nuORF	REV__ENST00000425785.1_1_1:98011504-98011909:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.29041069175	2	607.290411	1212.56627	0.93536	0.00056804	0.60785	0.00036914	1.5432	0.00093718	607.2894026297536	24.309	0.072357	24.309	24.237	24.309	0	1152	91	0.92775106	0.055024385	0.92775106	375.82297	0	22.289856						106	4	2	NaN	NaN	NaN	0.64158	1	16787	16787		12.049	2.3027	1	14302	+		6573	12129	3789	3873	5262	5262					-0.03151203318725493
FSQKSDVWSF	10	Unmodified	_FSQKSDVWSF_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.7931205561999	2	615.793121	1229.57169	0.47879	0.00029483	0.43725	0.00026925	0.91603	0.00056409	615.791754221757	33.021	0.096561	33.021	32.997	33.094	0	1143	64	0.9332562	0.03854823	0.9332562	377.99417	0	15.613098						98	5	2	NaN	NaN	NaN	0.77594	1	17247	17247		1.5054	0	1	7738.2			6574	2460	3790	3874	5263	5263					-0.0339147973627405
FSQLDSNSSND	11	Unmodified	_FSQLDSNSSND_					0	0	0		nc|ENSG00000198732|Q9H4F8|SMOC1;ENSG00000198732|ENST00000361956|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.17043469736666	3	405.170435	1212.48947	1.3587	0.00055051	-7.3542	-0.0029797	-5.9955	-0.0024292	405.1673846438046	38.105	0.14423	38.108	38.06	38.204	0.0034256	1455	52	0.7413668	0.031552076	0.73984736	450.4769	0	19.171997						153	7	3	NaN	NaN	NaN	0.74155	1	16106	16106		1.8502	0.16965	1	14331			6575	5800	3791	3875	5264	5264					-0.1082704660584568
FSQNSYLAYHW	11	Unmodified	_FSQNSYLAYHW_					0	0	0		nc|ENSG00000167766|P51522-2|ZNF83;ENSG00000167766|ENST00000597597|ZNF83	nc|ENSG00000167766|P51522-2|ZNF83	nc|ENSG00000167766|P51522-2|ZNF83	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.5508098137999	3	472.55081	1414.6306	1.5218	0.00071914	1.7304	0.00081771	3.2523	0.0015369	472.5513843442988	21.513	0.072298	21.513	21.513	21.585	0	1413	25	0.7673241	0.01482147	0.7673241	465.49985	0	8.991516						33	4	2	NaN	NaN	NaN	0.77843	1	20181	20181		0.43218	0.31426	1	2583.1			6576	4567	3792	3876	5265	5265					-0.0601300344194442
FSRPGHPCR	9	Unmodified	_FSRPGHPCR_					0	0	0		nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.84338207873327	3	352.843382	1055.50832	1.7098	0.00060329	7.3527	0.0025943	9.0625	0.0031976	352.84600248538715	13.949	0.19176	13.938	13.746	13.938	-0.010672	1464	31	0.73579943	0.018561065	0.73428	447.8401	0	11.297058						115	9	2	NaN	NaN	NaN	0.66196	1	10655	10655		1.1768	0.13678	1	13446			6577	7903	3793	3877	5266	5266					-0.017216989344888134
FSRTFEQM	8	Unmodified	_FSRTFEQM_					0	0	0			REV__ENST00000566471.1_1_16:30006154-30006935:-|nuORF	REV__ENST00000566471.1_1_16:30006154-30006935:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2422092889001	2	523.242209	1044.46987	1.6346	0.00085529	3.3286	0.0017417	4.9632	0.002597	523.2432998448018	19.756	0.09605	19.756	19.684	19.78	0	1290	88	0.84311575	0.05351591	0.84311575	342.15582	0	21.717987						90	5	2	NaN	NaN	NaN	0.16458	1	10386	10386		52.78	8.4773	1	16444	+		6578	10003	3794	3878	5267	5267					-0.05059049359647361
FSRTPVTYK	9	Unmodified	_FSRTPVTYK_					0	0	0			REV__ENST00000023939.8_1_20:55093737-55093842:+|nuORF	REV__ENST00000023939.8_1_20:55093737-55093842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.8695912375666	3	366.869591	1097.58694	3.3795	0.0012398	-5.1911	-0.0019045	-1.8117	-0.00066465	366.8676298643741	16.395	0.047953	16.382	16.358	16.406	-0.012993	1533	31	0.6930556	0.018607497	0.6915362	421.6165	0	11.319733						34	3	2	NaN	NaN	NaN	0.40649	1	12424	12424		8.9416	5.0329	1	2000	+		6579	11444	3795	3879	5268	5268					0.04205431851596586
FSSATYRALW	10	Unmodified	_FSSATYRALW_					0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.30365545275	2	601.303655	1200.59276	1.401	0.0008424	-10.938	-0.0065768	-9.5366	-0.0057344	601.2966383946336	24.791	0.19304	24.791	24.719	24.912	0	1125	91	0.9442611	0.055048108	0.9442611	382.55396	0	22.30194						400	9	4	NaN	NaN	NaN	0.14619	1	16493	16493		40.154	0.69505	1	89928	+		6580	11786	3796	3880	5269	5269					0.00048530363278587174
FSSEDSII	8	Unmodified	_FSSEDSII_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.4200043878001	1	897.420004	896.412728	2.0937	0.0018789	-0.031481	-2.8252E-05	2.0622	0.0018507	897.4199274789735	28.001	0.2413	28.001	27.929	28.17	0	354	142	1.4090419	0.08393967	1.4090419	286.52927	0	17.069183						532	11	4	NaN	NaN	NaN	0.078841	1	6006	6006		69.745	10.299	1	134070			6581	255	3797	3881	5270	5270					-0.03962193364372979
FSSEDSII	8	Unmodified	_FSSEDSII_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.4200043878001	1	897.420004	896.412728	1.3814	0.0012397	0.33778	0.00030313	1.7192	0.0015428	897.4199035560589	28.001	0.24129	27.992	27.943	28.185	-0.0089798	351	109	1.4108255	0.06425655	1.409306	286.89197	0	13.066589						545	11	4	NaN	NaN	NaN	0.12449	1	5891	5891		59.445	9.4126	1	141580			6582	255	3797	3881	5271	5271					-0.03962193364372979
FSSFTYTGP	9	Unmodified	_FSSFTYTGP_					0	0	0			REV__ENST00000446861.7_2_12:113565884-113573520:-|nuORF	REV__ENST00000446861.7_2_12:113565884-113573520:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.7294576669	2	503.729458	1005.44436	1.3872	0.00069877	-1.9136	-0.00096391	-0.52636	-0.00026514	503.72868718533175	29.256	0.12064	29.256	29.232	29.353	0	1317	49	0.8265074	0.02954036	0.8265074	335.5851	0	11.994202						164	6	3	NaN	NaN	NaN	0.55027	1	8782	8782		7.5404	0	1	19877	+		6583	12209	3798	3882	5272	5272					-0.058142006104276334
FSSGKGSS	8	Unmodified	_FSSGKGSS_					0	0	0			REV__ENST00000568455.1_1_16:75601938-75611181:+|nuORF	REV__ENST00000568455.1_1_16:75601938-75611181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3522591736001	1	756.352259	755.344983	1.3321	0.0010075	5.7924	0.0043811	7.1245	0.0053886	756.3566635700705	27.084	0.19305	27.084	27.06	27.253	0	588	70	1.2693287	0.041366935	1.2693287	258.84613	0	8.435699						206	9	3	NaN	NaN	NaN	0.69898	1	4161	4161		19.118	2.7017	1	21065	+		6584	12812	3799	3883	5273	5273					-0.042475985045143716
FSSGKGSS	8	Unmodified						0	0	0			REV__ENST00000568455.1_1_16:75601938-75611181:+|nuORF	REV__ENST00000568455.1_1_16:75601938-75611181:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.352259	755.344983	1.3321	0.0010075	5.7924	0.0043811	7.1245	0.0053886	756.3566635700705	27.084	0.19305	27.084	27.06	27.253	0	588	70	1.2693287	0.041366935	1.2693287	258.84613		8.435699	0.0054412	1.328E-05	0.00075972	NaN	19.118	206	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21065	+		6585	12812	3799	3883							-0.042475985045143716
FSSHMTEFP	9	Unmodified	_FSSHMTEFP_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;chr12:27333136-27368262|479|10.58|0.54|4.3|+|ENST00000546179|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;chr12:27368412-27376346|486|13.31|0.4|5.05|+|ENST00000544915|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7342170813	2	541.734217	1081.45388	1.602	0.00086785	5.0258	0.0027227	6.6278	0.0035905	541.737825244931	15.462	0.096132	15.462	15.414	15.51	0	1287	58	0.8449601	0.035039425	0.8449601	342.7517	0	14.21347						161	5	3	NaN	NaN	NaN	0.29681	1	12035	12035		19.118	3.6556	1	16888			6586	122	3800	3884	5274	5274					-0.08358755596555056
FSSLGLLEFS	10	Unmodified	_FSSLGLLEFS_					0	0	0			REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2871397213	2	550.28714	1098.55973	1.0385	0.00057145	-1.5388	-0.0008468	-0.50038	-0.00027535	550.2861403721857	32.997	0.38613	32.997	32.949	33.335	0	1197	76	0.9001988	0.045980036	0.9001988	365.08734	0	18.647797						450	17	4	NaN	NaN	NaN	0.20271	1	12791	12791		35.296	0.85769	1	133640	+		6587	8244	3801	3885	5275	5275					0.01438903520556778
FSSLGLLEFS	10	Unmodified						0	0	0			REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.28714	1098.55973	1.0385	0.00057145	-1.5388	-0.0008468	-0.50038	-0.00027535	550.2861403721857	32.997	0.38613	32.997	32.949	33.335	0	1197	76	0.9001988	0.045980036	0.9001988	365.08734		18.647797	0.0018039	-5.5028E-05	-0.00015938	NaN	35.296	450	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133640	+		6588	8244	3801	3885							0.01438903520556778
FSSLGLLEFS	10	Unmodified						0	0	0			REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	REV__CLK2|p.T250S|1|0.34|ENSG00000176444|chr1:155266819-155266819|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.28714	1098.55973	1.183	0.00065098	-1.4225	-0.00078276	-0.23947	-0.00013178	550.2861690532134	32.996	0.28941	32.993	32.945	33.235	-0.0024757	1194	82	0.902037	0.049658418	0.9005176	365.83286		20.139618	-0.0018039	7.3066E-05	0.00015938	NaN	35.296	388	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128700	+		6589	8244	3801	3885							0.01438903520556778
FSSRILVRD	9	Unmodified	_FSSRILVRD_					0	0	0		tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.87685726243336	3	364.876857	1091.60874	2.4455	0.00089231	-2.6499	-0.00096689	-0.20439	-7.4576E-05	365.2103186597247	14.74	0.047914	14.728	14.68	14.728	-0.011737	1479	28	0.72651637	0.016716719	0.7249969	442.00204	0	10.170227						42	3	2	NaN	NaN	NaN	0.59509	1	12162	12162		3.261	1.4108	1	2395.4			6590	14012	3802	3886	5276	5276					0.06660236600191638
FSSRKYSI	8	Unmodified	_FSSRKYSI_					0	0	0			REV__nc|ENSG00000159023|P11171-6|EPB41	REV__nc|ENSG00000159023|P11171-6|EPB41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5258068633001	1	987.525807	986.51853	1.913	0.0018891	-11.823	-0.011676	-9.9105	-0.0097869	987.5141727660233	36.952	0.2165	36.952	36.88	37.097	0	243	157	1.4749115	0.09246051	1.4749115	299.50943	0	18.77591						563	10	4	NaN	NaN	NaN	0.49126	1	8100	8100		31.561	2.6655	1	107280	+		6591	10176	3803	3887	5277	5277					0.024731872717552505
FSSSAHGA	8	Unmodified	_FSSSAHGA_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3369434604	1	763.336943	762.329667	1.631	0.001245	-9.7091	-0.0074113	-8.0781	-0.0061663	763.3299990825948	27.373	0.096523	27.363	27.339	27.436	-0.010126	561	46	1.2855089	0.026955366	1.2839894	262.10287	0	5.495941						73	5	2	NaN	NaN	NaN	0.82797	1	4166	4166		5.4659	1.0528	1	5633.5			6592	535	3804	3888	5278	5278					-0.061004653017221244
FSTDLHQI	8	Unmodified	_FSTDLHQI_					0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4785223197001	1	960.478522	959.471246	1.468	0.00141	-9.147	-0.0087855	-7.679	-0.0073755	960.4679755694455	27.253	0.048241	27.253	27.229	27.277	0	357	40	1.407258	0.02319014	1.407258	285.88205	0	4.7110596						34	3	2	NaN	NaN	NaN	0.84512	1	7313	7313		2.4615	0.28518	1	2338.5	+		6593	9969	3805	3889	5279	5279					-0.010110919992371237
FSTDLHQI	8	Unmodified						0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	960.478522	959.471246	1.468	0.00141	-9.147	-0.0087855	-7.679	-0.0073755	960.4679755694455	27.253	0.048241	27.253	27.229	27.277	0	357	40	1.407258	0.02319014	1.407258	285.88205		4.7110596	0.005429	0.0021801	-0.00013221	NaN	2.4615	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2338.5	+		6594	9969	3805	3889							-0.010110919992371237
FSTDLHQI	8	Unmodified						0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	960.478522	959.471246	2.0617	0.0019802	-12.916	-0.012406	-10.855	-0.010426	960.4665222983405	27.253	0.048244	27.242	27.242	27.291	-0.010126	354	34	1.4090419	0.019620419	1.4075224	286.24445		3.9858398	-0.005429	-0.0014403	0.00013221	NaN	2.4615	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2957.7	+		6595	9969	3805	3889							-0.010110919992371237
FSVAGDPLWP	10	Unmodified	_FSVAGDPLWP_					0	0	0		ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5411225765	1	1088.54112	1087.53385	0.77191	0.00084025	3.9951	0.0043488	4.767	0.005189	1088.5456403340997	33.044	0.096451	33.042	33.042	33.138	-0.0024757	114	97	1.5511382	0.056561828	1.5496187	314.58527	0	11.471252						111	5	2	NaN	NaN	NaN	0.71736	1	11973	11973		6.8632	1.1691	1	13219			6596	7531	3806	3890	5280	5280					-0.00641945931056398
FSVAGDPLWP	10	Unmodified						0	0	0		ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1088.54112	1087.53385	1.3526	0.0014723	6.7223	0.0073175	8.0748	0.0087898	1088.5493380095686	33.021	0.072407	33.021	33.021	33.094	0	108	61	1.5546752	0.035377264	1.5546752	315.3026		7.1748657	-0.010209	0.001063	0.0025282	NaN	6.8632	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16765			6597	7531	3806	3890							-0.00641945931056398
FSVDADVAL	9	Unmodified	_FSVDADVAL_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4672889314	1	936.467289	935.460012	1.5321	0.0014347	0.99689	0.00093355	2.529	0.0023683	936.4679137649672	27.422	0.16896	27.422	27.398	27.567	0	315	73	1.4322147	0.042755723	1.4322147	291.05762	0	8.688904						333	8	4	NaN	NaN	NaN	0.023074	1	6734	6734		68.108	31.522	1	71307			6598	946	3807	3891	5281	5281					-0.010299140933739181
FSVDADVAL	9	Unmodified	_FSVDADVAL_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4672889314	1	936.467289	935.460012	1.5423	0.0014443	-0.011182	-1.0471E-05	1.5311	0.0014338	936.4674129169352	27.446	0.26546	27.436	27.387	27.653	-0.010126	312	76	1.433996	0.044534802	1.4324765	291.41962	0	9.050446						366	12	4	NaN	NaN	NaN	0.056143	1	6595	6595		44.302	12.741	1	62583			6599	946	3807	3891	5282	5282					-0.010299140933739181
FSVDADVVL	9	Unmodified	_FSVDADVVL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.4518	0.0014003	1.0662	0.0010284	2.518	0.0024286	964.4996501971624	29.28	0.096512	29.28	29.28	29.377	0	258	88	1.4660252	0.05157268	1.4660252	297.8029	0	10.476288						203	5	3	NaN	NaN	NaN	0.094712	1	7438	7438		36.586	5.0254	1	44305			6600	3795	3808	3892	5283	5283					0.008106589407248066
FSVDADVVL	9	Unmodified	_FSVDADVVL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	1.1515	0.0011106	-0.13949	-0.00013453	1.012	0.0009761	964.4988872066392	29.304	0.096514	29.296	29.248	29.344	-0.0077229	255	121	1.4678029	0.07108569	1.4662834	298.164	0	14.440094						202	5	2	NaN	NaN	NaN	0.062072	1	7285	7285		41.785	16.823	1	54301			6601	3795	3808	3892	5284	5284					0.008106589407248066
FSVEGQLEFR	10	Unmodified	_FSVEGQLEFR_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.30639510695	2	606.306395	1210.59824	1.5729	0.00095364	-0.47114	-0.00028565	1.1017	0.00066799	606.30531162159	23.393	0.14475	23.393	23.32	23.465	0	1152	79	0.92775106	0.047744393	0.92775106	375.82983	0	19.341156						191	7	4	NaN	NaN	NaN	0.63397	1	16735	16735		12.57	2.2096	1	22682			6602	1139;909	3809	3893	5285	5285					0.0013620915508454345
FSVGVAWAPLD	11	Unmodified	_FSVGVAWAPLD_					0	0	0		ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.30058144755	2	581.300581	1160.58661	1.1763	0.00068376	-0.44654	-0.00025957	0.72971	0.00042418	581.2997663042149	32.996	0.096394	32.993	32.969	33.066	-0.0024757	1230	40	0.8799654	0.023925126	0.878446	356.64505	0	9.696716						104	5	3	NaN	NaN	NaN	0.65577	1	14661	14661		10.36	2.7726	1	12239			6603	1250	3810	3894	5286	5286					0.012740121317619924
FSVIEDLKR	9	Unmodified	_FSVIEDLKR_					0	0	0		ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9	ENSG00000186393|ENST00000335552|KRT26	ENSG00000186393|ENST00000335552|KRT26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8138559983	2	553.813856	1105.61316	1.4233	0.00078823	-1.6019	-0.00088715	-0.17861	-9.8919E-05	553.812494694498	15.966	0.12001	15.966	15.942	16.062	0	1227	46	0.88180584	0.027605891	0.88180584	357.59958	0	11.195038						198	6	4	NaN	NaN	NaN	0.055351	1	13099	13099		44.638	11.213	1	40510		+	6604	222	3811	3895	5287	5287					0.06457701023077789
FSVIGSSLF	9	Unmodified	_FSVIGSSLF_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5087598156001	1	956.50876	955.501483	1.5816	0.0015128	0.46546	0.00044521	2.0471	0.001958	956.5091453846127	30.27	0.14479	30.27	30.246	30.391	0	198	82	1.5015416	0.04792428	1.5015416	305.05353	0	9.736298						219	7	3	NaN	NaN	NaN	0.021105	1	7221	7221		70.6	2.4914	1	30069	+	+	6605	13001;11047	3812	3896	5288	5288					0.021952666659558417
FSVIGSSLF	9	Unmodified	_FSVIGSSLF_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5087598156001	1	956.50876	955.501483	1.1889	0.0011372	-0.26272	-0.0002513	0.92621	0.00088593	956.5083036210492	30.269	0.16889	30.263	30.238	30.407	-0.0064106	198	76	1.5015416	0.04436493	1.5000222	305.05353	0	9.013184						242	8	3	NaN	NaN	NaN	0.14301	1	7082	7082		29.598	0.9318	1	32106	+	+	6606	13001;11047	3812	3896	5289	5289					0.021952666659558417
FSVIGSSLF	9	Unmodified						0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	956.50876	955.501483	1.5816	0.0015128	0.46546	0.00044521	2.0471	0.001958	956.5091453846127	30.27	0.14479	30.27	30.246	30.391	0	198	82	1.5015416	0.04792428	1.5015416	305.05353		9.736298	0.0036863	0.00042464	0.00075972	NaN	70.6	219	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30069	+	+	6607	13001;11047	3812	3896							0.021952666659558417
FSVIGSSLF	9	Unmodified						0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	956.50876	955.501483	1.1889	0.0011372	-0.26272	-0.0002513	0.92621	0.00088593	956.5083036210492	30.269	0.16889	30.263	30.238	30.407	-0.0064106	198	76	1.5015416	0.04436493	1.5000222	305.05353		9.013184	-0.0036863	-0.00027187	-0.00075972	NaN	70.6	242	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32106	+	+	6608	13001;11047	3812	3896							0.021952666659558417
FSVNGGVP	8	Unmodified	_FSVNGGVP_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.3937300578001	1	776.39373	775.386454	1.2917	0.0010029	3.959	0.0030737	5.2507	0.0040766	776.3967924041704	31.114	0.24136	31.109	31.06	31.302	-0.0050716	549	55	1.292695	0.032334447	1.2911756	263.48953	0	6.5906982						250	11	3	NaN	NaN	NaN	0.84512	1	4358	4358		2.4615	0	1	29127	+		6609	10425	3813	3897	5290	5290					-0.010224177451846117
FSVQNGIICSL	11	Unmodified	_FSVQNGIICSL_					0	0	0		nc|ENSG00000034053|Q99767-2|APBA2;ENSG00000034053|ENST00000683413|APBA2;nc|ENSG00000107282|Q02410-2|APBA1;ENSG00000107282|ENST00000265381|APBA1	nc|ENSG00000034053|Q99767-2|APBA2	nc|ENSG00000034053|Q99767-2|APBA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8051736864501	2	590.805174	1179.59579	0.93547	0.00055268	-1.7928	-0.0010592	-0.85735	-0.00050653	590.8043964576555	29.569	0.16891	29.562	29.49	29.659	-0.0070667	1179	82	0.9112251	0.049604833	0.90970564	369.2445	0	20.100769						430	8	4	NaN	NaN	NaN	0.17366	1	15232	15232		32.778	3.1797	1	87460			6610	503	3814	3898	5291	5291					0.01318037425789953
FSVQNGIICSL	11	Unmodified						0	0	0		nc|ENSG00000034053|Q99767-2|APBA2;ENSG00000034053|ENST00000683413|APBA2;nc|ENSG00000107282|Q02410-2|APBA1;ENSG00000107282|ENST00000265381|APBA1	nc|ENSG00000034053|Q99767-2|APBA2	nc|ENSG00000034053|Q99767-2|APBA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.805174	1179.59579	1.5305	0.00090423	-3.426	-0.0020241	-1.8955	-0.0011199	590.8034204857507	29.546	0.21719	29.546	29.498	29.715	0	1182	73	0.9093879	0.044095516	0.9093879	368.50006		17.868286	-0.0081115	-0.0011093	-0.00015889	NaN	32.778	427	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81648			6611	503	3814	3898							0.01318037425789953
FSVSVLLWV	9	Unmodified	_FSVSVLLWV_					0	0	0		tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	tr|U7SWS4|U7SWS4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01156PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.6029945517998	1	1049.60299	1048.59572	1.2405	0.001302	0.08869	9.3089E-05	1.3292	0.0013951	1049.6036136006644	35.456	0.072388	35.457	35.433	35.505	0.00053024	84	67	1.5688156	0.038877964	1.5672961	318.31848	0	7.888489						80	4	2	NaN	NaN	NaN	0.47587	1	10363	10363		10.605	0	1	5561.3			6612	13905	3815	3899	5292	5292					0.07336405488081255
FSVYSHKLF	9	Unmodified	_FSVYSHKLF_					0	0	0		SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.29784179335	2	564.297842	1126.58113	2.0882	0.0011784	-3.8952	-0.0021981	-1.807	-0.0010197	564.2951524314769	16.901	0.0959	16.901	16.877	16.973	0	1209	40	0.892844	0.023909628	0.892844	361.99292	0	9.693878						74	5	3	NaN	NaN	NaN	0.51576	1	13969	13969		8.962	0	1	4924			6613	13693	3816	3900	5293	5293					0.02290333339942663
FSVYSHKLF	9	Unmodified						0	0	0		SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	SRGAP3|p.L496F|1|0.52|ENSG00000196220|chr3:9032703-9032703|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.297842	1126.58113	2.2259	0.001256	-4.1448	-0.0023389	-1.9189	-0.0010828	564.7988482899668	17.066	0.14404	17.053	16.981	17.125	-0.013294	1212	25	0.8910048	0.0147128105	0.88948536	361.24725		5.965149	0.075602	-0.00015187	-0.0016793	NaN	8.962	68	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3786.2			6614	13693	3816	3900							0.02290333339942663
FSWEECQS	8	Unmodified	_FSWEECQS_					0	0	0			REV__ENSG00000169427|ENST00000520439|KCNK9	REV__ENSG00000169427|ENST00000520439|KCNK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.1949247453	2	508.194925	1014.3753	1.0409	0.00052898	-3.6457	-0.0018527	-2.6048	-0.0013237	508.6941230838304	31.115	0.12066	31.115	31.066	31.187	0	1320	46	0.824661	0.027695596	0.824661	334.79565	0	11.243866						166	6	3	NaN	NaN	NaN	0.72043	1	9140	9140		17.78	1.3439	1	27423	+		6615	10551	3817	3901	5294	5294					-0.13131607901641473
FSWMILIL	8	Unmodified	_FSWMILIL_					0	0	0		chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|68	chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|68	chr8:129752820-129754552|279|12.69|0.25|5.67|-|1|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.7908067134501	2	511.790807	1021.56706	1.8864	0.00096546	-5.8866	-0.0030127	-4.0002	-0.0020473	511.7877611848899	27.398	0.16898	27.398	27.35	27.519	0	1266	79	0.85786515	0.04790461	0.85786515	348.24304	0	19.446472						380	8	3	NaN	NaN	NaN	0.19946	1	9444	9444		50.033	11.115	1	113200			6616	155	3818	3902	5295	5295					0.05713964587312148
FSYNIIFW	8	Unmodified	_FSYNIIFW_					0	0	0		nc|ENSG00000108219|Q8NG11-3|TSPAN14;nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-3|TSPAN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2738353808	2	545.273835	1088.53312	1.514	0.00082557	-1.9353	-0.0010553	-0.4213	-0.00022973	545.272956013275	20.045	0.14417	20.045	19.997	20.141	0	1281	55	0.84864825	0.033179045	0.84864825	344.21964	0	13.457733						137	7	2	NaN	NaN	NaN	0.79379	1	12317	12317		10.052	0.92837	1	15807			6617	1669	3819	3903	5296	5296					-0.007607405801081768
FSYNIIFW	8	Unmodified						0	0	0		nc|ENSG00000108219|Q8NG11-3|TSPAN14;nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-3|TSPAN14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.273835	1088.53312	1.6721	0.00091173	1.1927	0.00065034	2.8648	0.0015621	545.2743844696555	20.068	0.04818	20.054	20.006	20.054	-0.014141	1287	52	0.8449601	0.031340897	0.84344065	342.72366		12.712128	0.0046867	0.001338	-0.0026038	NaN	10.052	64	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7749.7			6618	1669	3819	3903							-0.007607405801081768
FTAAGFGG	8	Unmodified	_FTAAGFGG_					0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3409662058001	1	727.340966	726.33369	0.68911	0.00050122	-0.17006	-0.00012369	0.51905	0.00037753	727.3410021510933	37.53	0.14453	37.53	37.458	37.602	0	666	85	1.2224985	0.050524235	1.2224985	249.47388	0	10.310425						207	7	2	NaN	NaN	NaN	0.84876	1	3706	3706		0.39566	0	1	15999	+		6619	10143	3820	3904	5297	5297					-0.040423758080009975
FTAAGFGG	8	Unmodified						0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	727.340966	726.33369	0.68911	0.00050122	-0.17006	-0.00012369	0.51905	0.00037753	727.3410021510933	37.53	0.14453	37.53	37.458	37.602	0	666	85	1.2224985	0.050524235	1.2224985	249.47388		10.310425	0.011886	-0.00048589	0.0016616	NaN	0.39566	207	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15999	+		6620	10143	3820	3904							-0.040423758080009975
FTAASAGF	8	Unmodified	_FTAASAGF_					0	0	0		tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3671809563001	1	771.367181	770.359904	2.0564	0.0015863	-10.066	-0.0077646	-8.0095	-0.0061783	771.3594532685926	18.94	0.048048	18.94	18.916	18.964	0	552	40	1.2908988	0.023353815	1.2908988	263.15332	0	4.760742						55	3	2	NaN	NaN	NaN	0.80692	1	4356	4356		8.2903	1.4963	1	5434.3			6621	13837	3821	3905	5298	5298					-0.034461066365224724
FTAESVLQFT	10	Unmodified	_FTAESVLQFT_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5728166354	1	1142.57282	1141.56554	2.2271	0.0025446	6.4644	0.0073861	8.6915	0.0099307	1142.580535660869	32.78	0.19306	32.78	32.732	32.925	0	57	100	1.5847093	0.05829537	1.5847093	321.2031	0	11.815826						270	9	3	NaN	NaN	NaN	0.33935	1	14521	14521		26.115	4.28	1	35435	+		6622	10028	3822	3906	5299	5299					0.0004200203222808341
FTASDLTAL	9	Unmodified	_FTASDLTAL_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.4829389956	1	938.482939	937.475663	1.625	0.001525	-1.9249	-0.0018065	-0.2999	-0.00028145	938.4802659206779	28.243	0.096529	28.243	28.194	28.291	0	294	88	1.4446791	0.05164945	1.4446791	293.5815	0	10.496002						145	5	2	NaN	NaN	NaN	0.12945	1	6766	6766		31.561	1.9627	1	14351			6623	3880	3823	3907	5300	5300					0.004423724236630733
FTATGELQP	9	Unmodified	_FTATGELQP_					0	0	0			REV__ENSG00000165606|ENST00000374139|DRGX	REV__ENSG00000165606|ENST00000374139|DRGX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4781879687001	1	963.478188	962.470912	1.3777	0.0013273	4.3712	0.0042115	5.7488	0.0055389	963.4827020016382	29.039	0.14478	29.039	29.015	29.16	0	201	55	1.4997677	0.03193426	1.4997677	304.6617	0	6.487091						157	7	2	NaN	NaN	NaN	0.23112	1	7400	7400		23.334	1.2081	1	18579	+		6624	10386	3824	3908	5301	5301					-0.01182511719082413
FTDEESYSF	9	Unmodified	_FTDEESYSF_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.72456925425	2	562.724569	1123.43459	1.1822	0.00066524	0.99139	0.00055788	2.1736	0.0012231	562.7248988553292	34.419	0.14463	34.419	34.37	34.515	-0.00064468	1242	52	0.87260187	0.031300247	0.8710824	353.79794	0	12.690735						170	7	3	NaN	NaN	NaN	0.45297	1	13387	13387		11.548	0.37812	1	13797			6625	4941	3825	3909	5302	5302					-0.1221943340647158
FTDSRERA	8	Unmodified	_FTDSRERA_					0	0	0			REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF	REV__ENST00000474026.5_1_1:223946905-223957668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4748339253001	1	981.474834	980.467557	1.6882	0.0016569	4.1722	0.0040949	5.8604	0.0057518	981.4808155606582	26.77	0.097004	26.77	26.722	26.819	0	207	70	1.496219	0.04082012	1.496219	303.86212	0	8.290009						146	5	2	NaN	NaN	NaN	0.69898	1	7893	7893		19.118	0	1	18283	+		6626	10261	3826	3910	5303	5303					-0.023457617730855418
FTEEDLDLVTL	11	Unmodified	_FTEEDLDLVTL_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.82428329885	2	647.824283	1293.63401	0.75732	0.00049061	3.6594	0.0023707	4.4168	0.0028613	648.3292469327779	31.934	0.19303	31.93	31.858	32.051	-0.0037613	1092	52	0.9644182	0.03113848	0.96289873	390.4008	0	12.605011						255	9	4	NaN	NaN	NaN	0.74155	1	17820	17820		4.7291	1.1593	1	23082			6627	5253	3827	3911	5304	5304					-0.0010579817858342722
FTEVLIWV	8	Unmodified	_FTEVLIWV_					0	0	0			REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5607953861002	1	1006.5608	1005.55352	1.4964	0.0015062	3.921	0.0039467	5.4174	0.005453	1006.5648384434908	32.177	0.19303	32.177	32.128	32.321	0	231	151	1.4820169	0.08873451	1.4820169	300.87378	0	18.014557						362	9	4	NaN	NaN	NaN	0.54545	1	8815	8815		28.667	0.8777	1	85717	+		6628	11010	3828	3912	5305	5305					0.05096430079720449
FTEVLIWV	8	Unmodified						0	0	0			REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	REV__nc|ENSG00000186815|Q9ULQ1-2|TPCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1006.5608	1005.55352	1.4964	0.0015062	3.921	0.0039467	5.4174	0.005453	1006.5648384434908	32.177	0.19303	32.177	32.128	32.321	0	231	151	1.4820169	0.08873451	1.4820169	300.87378		18.014557	0	0	0	NaN	28.667	362	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85717	+		6629	11010	3828	3912							0.05096430079720449
FTFDVSFVSS	10	Unmodified	_FTFDVSFVSS_					0	0	0			REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2689469681501	2	568.268947	1134.52334	1.2692	0.00072127	4.2303	0.0024039	5.4995	0.0031252	568.7725746722942	30.946	0.24134	30.946	30.849	31.091	0	1233	91	0.87812483	0.055220783	0.87812483	355.99506	0	22.386688						709	11	4	NaN	NaN	NaN	0.53991	1	14251	14251		17.799	2.7861	1	75513	+		6630	12743	3829	3913	5306	5306					-0.038539733761354
FTFDVSFVSS	10	Unmodified						0	0	0			REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.268947	1134.52334	1.2692	0.00072127	4.2303	0.0024039	5.4995	0.0031252	568.7725746722942	30.946	0.24134	30.946	30.849	31.091	0	1233	91	0.87812483	0.055220783	0.87812483	355.99506		22.386688	0.0030506	0.0015955	-0.00016058	NaN	17.799	709	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75513	+		6631	12743	3829	3913							-0.038539733761354
FTFDVSFVSS	10	Unmodified						0	0	0			REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	REV__ENST00000551228.1_1_12:106701087-106701132:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.268947	1134.52334	1.1484	0.00065262	1.8436	0.0010477	2.9921	0.0017003	568.7719224934716	30.945	0.28966	30.94	30.867	31.157	-0.0050716	1230	103	0.8799654	0.06259036	0.878446	356.74124		25.37436	-0.0030506	-0.0011171	0.00016058	NaN	17.799	683	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98156	+		6632	12743	3829	3913							-0.038539733761354
FTFLLHHKQH	10	Unmodified	_FTFLLHHKQH_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.35401400155	2	654.354014	1306.69348	1.045	0.00068378	0.71924	0.00047064	1.7642	0.0011544	654.3560598649406	32.537	0.072418	32.534	32.51	32.583	-0.0031052	1104	28	0.9570911	0.016488612	0.95557165	387.39383	0	6.67395						69	4	3	NaN	NaN	NaN	0.69717	1	18049	18049		8.2448	3.0559	1	3870.7	+		6633	9960	3830	3914	5307	5307					0.05239607136786617
FTGGGLDF	8	Unmodified	_FTGGGLDF_					0	0	0			REV__ENST00000442006.2_1_1:39174637-39175513:+|nuORF	REV__ENST00000442006.2_1_1:39174637-39175513:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.3777456426001	1	813.377746	812.370469	1.4227	0.0011572	-0.027712	-2.254E-05	1.3949	0.0011346	813.3776321742357	30.076	0.12068	30.07	30.021	30.142	-0.0064087	489	55	1.3285799	0.032255054	1.3270605	270.58948	0	6.569336						102	6	2	NaN	NaN	NaN	0.76633	1	4814	4814		13.737	1.1492	1	8289.6	+		6634	8472	3831	3915	5308	5308					-0.043221239820923074
FTGKAVPADVL	11	Unmodified	_FTGKAVPADVL_					0	0	0		ENST00000549114.5_1_16:779204-779453:+|nuORF;ENSG00000103253|ENST00000389703|HAGHL	ENST00000549114.5_1_16:779204-779453:+|nuORF	ENST00000549114.5_1_16:779204-779453:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.2132464967	3	373.213246	1116.61791	1.2191	0.00045497	2.8892	0.0010783	4.1082	0.0015333	373.2144300467409	12.364	0.11991	12.364	12.34	12.46	0	1479	31	0.72651637	0.018571138	0.72651637	441.8788	0	11.295258						81	6	2	NaN	NaN	NaN	0.57257	1	13550	13550		8.4563	1.1669	1	8236.7			6635	1425	3832	3916	5309	5309					0.06426585165854704
FTGLSMTTI	9	Unmodified	_FTGLSMTTI_					0	0	0		nc|ENSG00000182463|Q9NRE2-2|TSHZ2;nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000182463|ENST00000371497|TSHZ2;ENSG00000179981|ENST00000580243|TSHZ1;ENSG00000121297|ENST00000240587|TSHZ3	nc|ENSG00000182463|Q9NRE2-2|TSHZ2	nc|ENSG00000182463|Q9NRE2-2|TSHZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4913951919001	1	970.491395	969.484119	1.2131	0.0011773	-5.3261	-0.0051689	-4.1129	-0.0039916	970.48624700667	27.663	0.072376	27.653	27.653	27.726	-0.009552	291	67	1.446459	0.039159417	1.4449396	293.8027	0	7.95401						121	4	3	NaN	NaN	NaN	0.56671	1	7440	7440		6.8632	0.77288	1	8340.8			6636	2292	3833	3917	5310	5310					-0.0018439693135405832
FTGSIFIGR	9	Unmodified	_FTGSIFIGR_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.276909386	2	499.276909	996.539266	1.1155	0.00055695	-1.3884	-0.0006932	-0.27289	-0.00013625	499.276317593224	22.717	0.16867	22.704	22.68	22.848	-0.01354	1311	61	0.83019954	0.03690952	0.8286801	337.12488	0	14.988098						181	8	2	NaN	NaN	NaN	0.084037	1	8280	8280		38.131	18.967	1	28785			6637	1944	3834	3918	5311	5311					0.04085777651414446
FTGSIFIGR	9	Unmodified						0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.276909	996.539266	1.8629	0.00093008	-1.3587	-0.00067836	0.50418	0.00025172	499.27708648346027	22.694	0.12062	22.694	22.67	22.79	0	1314	55	0.8283535	0.033218563	0.8283535	336.37527		13.489319	-0.0049944	1.6964E-05	-0.00016327	NaN	38.131	199	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29403			6638	1944	3834	3918							0.04085777651414446
FTGTLFWRN	9	Unmodified	_FTGTLFWRN_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2930907664501	2	571.293091	1140.57163	1.7917	0.0010236	-10.423	-0.0059545	-8.6312	-0.004931	571.28842653443	22.067	0.14478	22.067	22.067	22.212	0	1227	52	0.88180584	0.03127992	0.88180584	357.46463	0	12.680176						133	7	2	NaN	NaN	NaN	0.56671	1	14466	14466		6.8632	1.9535	1	13885			6639	927	3835	3919	5312	5312					0.0069656505440889305
FTGTLFWRN	9	Unmodified						0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.293091	1140.57163	2.4286	0.0013875	-17.13	-0.0097861	-14.701	-0.0083986	571.2816455703788	21.681	0.024071	21.667	21.667	21.691	-0.013895	1224	31	0.883646	0.018399	0.88212657	358.21063		7.4585266	-0.19972	-0.0044089	0.00016038	NaN	6.8632	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2054.8			6640	927	3835	3919							0.0069656505440889305
FTILSAFSV	9	Unmodified	_FTILSAFSV_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5400599440001	1	984.54006	983.532783	1.6773	0.0016514	-0.70013	-0.00068931	0.97718	0.00096207	984.5401484954792	29.473	0.12064	29.466	29.417	29.538	-0.0070667	258	40	1.4660252	0.02310896	1.4645058	297.71735	0	4.692932						90	6	2	NaN	NaN	NaN	0.39244	1	7839	7839		14.042	1.4537	1	6427.7	+		6641	13572	3836	3920	5313	5313					0.04035839700043198
FTISQTAFGS	10	Unmodified	_FTISQTAFGS_					0	0	0			REV__ENST00000394232.5_1_15:91643545-91769195:+|nuORF	REV__ENST00000394232.5_1_15:91643545-91769195:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5153017564999	1	1058.5153	1057.50803	1.9769	0.0020925	-11.259	-0.011918	-9.2821	-0.0098252	1058.5027290527592	24.985	0.072403	24.985	24.96	25.033	0	219	46	1.4891195	0.026627302	1.4891195	302.1148	0	5.4022217						79	4	2	NaN	NaN	NaN	0.73444	1	10978	10978		5.6942	0.78442	1	7182.4	+		6642	11996	3837	3921	5314	5314					-0.018428401733444844
FTISQTAFGS	10	Unmodified						0	0	0			REV__ENST00000394232.5_1_15:91643545-91769195:+|nuORF	REV__ENST00000394232.5_1_15:91643545-91769195:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1058.5153	1057.50803	1.9769	0.0020925	-11.259	-0.011918	-9.2821	-0.0098252	1058.5027290527592	24.985	0.072403	24.985	24.96	25.033	0	219	46	1.4891195	0.026627302	1.4891195	302.1148		5.4022217	0.0063063	0.00029666	-0.00012786	NaN	5.6942	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7182.4	+		6643	11996	3837	3921							-0.018428401733444844
FTKIFKGVRR	10	Unmodified	_FTKIFKGVRR_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3878568189	2	626.387857	1250.76116	1.1186	0.00070069	-0.1153	-7.2223E-05	1.0033	0.00062847	626.3877725533321	39.694	0.24089	39.694	39.622	39.863	0	1206	109	0.894683	0.066257775	0.894683	362.30283	0	26.831177						595	11	2	NaN	NaN	NaN	0.77928	1	17795	17795		0.69115	0	1	237400			6644	1145	3838	3922	5315	5315					0.1458105706758488
FTKIFKGVRR	10	Unmodified	_FTKIFKGVRR_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3878568189	2	626.387857	1250.76116	0.75849	0.00047511	-1.6578	-0.0010385	-0.89936	-0.00056335	626.3869044422795	40.631	0.14408	40.637	40.589	40.733	0.0067558	1221	61	0.885486	0.03681785	0.88396657	358.5785	0	14.909424						124	7	2	NaN	NaN	NaN	0.77513	1	17037	17037		1.7022	0.19679	1	10923			6645	1145	3838	3922	5316	5316					0.1458105706758488
FTKLLCDI	8	Unmodified	_FTKLLCDI_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.7622462392499	2	476.762246	951.50994	1.5978	0.00076176	-9.959	-0.0047481	-8.3612	-0.0039863	476.7574233983965	23.416	0.19304	23.403	23.355	23.548	-0.013294	1326	55	0.8209676	0.033247292	0.81944823	333.59082	0	13.509674						265	9	4	NaN	NaN	NaN	0.49126	1	6992	6992		31.561	8.2266	1	46867			6646	4314	3839	3923	5317	5317					0.032244973109072816
FTKQLDSSFP	10	Unmodified	_FTKQLDSSFP_					0	0	0			REV__nc|ENSG00000133961|P49757-8|NUMB	REV__nc|ENSG00000133961|P49757-8|NUMB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.29549606965	2	585.295496	1168.57644	2.2528	0.0013186	4.7338	0.0027707	6.9866	0.0040892	585.2990714270154	17.789	0.11991	17.789	17.765	17.885	0	1191	43	0.90387505	0.02573353	0.90387505	366.30603	0	10.4288025						122	6	2	NaN	NaN	NaN	0.64158	1	15444	15444		12.049	0.87837	1	10555	+		6647	9576	3840	3924	5318	5318					-0.0011059559349178016
FTKQLDSSFP	10	Unmodified						0	0	0			REV__nc|ENSG00000133961|P49757-8|NUMB	REV__nc|ENSG00000133961|P49757-8|NUMB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.295496	1168.57644	2.2528	0.0013186	4.7338	0.0027707	6.9866	0.0040892	585.2990714270154	17.789	0.11991	17.789	17.765	17.885	0	1191	43	0.90387505	0.02573353	0.90387505	366.30603		10.4288025	0	0	0	NaN	12.049	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10555	+		6648	9576	3840	3924							-0.0011059559349178016
FTKSIASML	9	Unmodified	_FTKSIASML_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.27297810105	2	499.272978	996.531403	1.8629	0.00093008	6.5153	0.0032529	8.3782	0.004183	499.27708648346027	22.694	0.12062	22.694	22.67	22.79	0	1314	55	0.8283535	0.033218563	0.8283535	336.37527	0	13.489319						199	6	4	NaN	NaN	NaN	0.35794	1	8451	8451		15.463	4.2923	1	29403	+		6649	10560	3841	3925	5319	5319					0.03299882339638316
FTLNQPHRLQ	10	Unmodified	_FTLNQPHRLQ_					0	0	0		ENST00000310924.6_1_17:77907534-77907972:-|nuORF	ENST00000310924.6_1_17:77907534-77907972:-|nuORF	ENST00000310924.6_1_17:77907534-77907972:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3411035915501	2	627.341104	1252.66765	0.746	0.000468	-9.121	-0.005722	-8.375	-0.005254	627.3352273716554	30.221	0.31368	30.214	30.094	30.407	-0.0064106	1125	43	0.9442611	0.025666952	0.94274163	382.3732	0	10.393677						201	14	2	NaN	NaN	NaN	0.71559	1	17080	17080		6.9844	0.73415	1	28011			6650	6447	3842	3926	5320	5320					0.05142712894507895
FTNEETVSF	9	Unmodified	_FTNEETVSF_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;nc|ENSG00000153310|Q9NUQ9-2|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.4785818992	1	1073.47858	1072.47131	2.1127	0.002268	-1.875	-0.0020128	0.2377	0.00025517	1073.4754318508212	23.224	0.048225	23.224	23.2	23.248	0	204	40	1.4979934	0.023067236	1.4979934	303.8605	0	4.679077						63	3	2	NaN	NaN	NaN	0.46215	1	11652	11652		11.17	0	1	5469.1			6651	3807	3843	3927	5321	5321					-0.06203136789895325
FTNEETVSF	9	Unmodified	_FTNEETVSF_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;nc|ENSG00000153310|Q9NUQ9-2|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.4785818992	1	1073.47858	1072.47131	1.9502	0.0020935	0.90735	0.00097403	2.8576	0.0030676	1073.478407935131	23.248	0.12063	23.234	23.21	23.331	-0.013294	201	49	1.4997677	0.028385997	1.4982482	304.2204	0	5.7579346						98	6	2	NaN	NaN	NaN	0.026469	1	11352	11352		63.731	18.566	1	8241.8			6652	3807	3843	3927	5322	5322					-0.06203136789895325
FTNERPPN	8	Unmodified	_FTNERPPN_					0	0	0			REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.73814836624996	2	487.738148	973.461744	1.4228	0.00069395	6.5593	0.0031992	7.9821	0.0038932	487.74172084745965	19.515	0.14445	19.5	19.452	19.597	-0.014141	1311	46	0.83019954	0.027692616	0.8286801	337.23364	0	11.248962						167	7	3	NaN	NaN	NaN	0.73961	1	7549	7549		16.584	0.16752	1	24847	+		6653	12259	3844	3928	5323	5323					-0.026048602847708935
FTPDHVVYA	9	Unmodified	_FTPDHVVYA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7585494573501	2	524.758549	1047.50255	1.5971	0.00083812	-0.34137	-0.00017914	1.2558	0.00065898	524.7584577626066	19.18	0.21599	19.18	19.108	19.324	0	1275	61	0.85233563	0.03687364	0.85233563	345.88446	0	14.963593						339	10	4	NaN	NaN	NaN	0.062072	1	10521	10521		41.785	23.986	1	81597			6654	5079	3845	3929	5324	5324					-0.019305189651277033
FTPDHVVYA	9	Unmodified	_FTPDHVVYA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7585494573501	2	524.758549	1047.50255	1.5162	0.00079566	-0.32338	-0.0001697	1.1929	0.00062596	524.7586612700908	19.202	0.21633	19.188	19.116	19.332	-0.014141	1275	58	0.85233563	0.03502804	0.8508162	345.88446	0	14.214661						288	10	4	NaN	NaN	NaN	0.030391	1	10310	10310		58.599	24.16	1	78392			6655	5079	3845	3929	5325	5325					-0.019305189651277033
FTPTTQHDTYS	11	Unmodified	_FTPTTQHDTYS_					0	0	0			REV__sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	REV__sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2883993190501	2	649.288399	1296.56225	2.1814	0.0014164	-4.2792	-0.0027785	-2.0978	-0.0013621	649.2843939910338	25.901	0.14477	25.901	25.877	26.022	0	1125	85	0.9442611	0.05136162	0.9442611	382.232	0	20.790894						263	7	3	NaN	NaN	NaN	0.74155	1	18709	18709		4.7291	0.41892	1	60256	+		6656	13335	3846	3930	5326	5326					-0.07417292812419873
FTQKVWQDHTR	11	Unmodified	_FTQKVWQDHTR_					0	0	0			REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3678496583	2	723.36785	1444.72115	1.3152	0.0009514	-4.9557	-0.0035848	-3.6404	-0.0026334	723.3646063008381	45.694	0.19214	45.694	45.646	45.838	0	1137	82	0.9369253	0.049535275	0.9369253	378.8522	0	20.029938						415	9	3	NaN	NaN	NaN	0.76654	1	20357	20357		2.5994	0.67481	1	42034	+		6657	9171	3847	3931	5327	5327					0.016574656063539805
FTQKVWQDHTR	11	Unmodified						0	0	0			REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	723.36785	1444.72115	1.3152	0.0009514	-4.9557	-0.0035848	-3.6404	-0.0026334	723.3646063008381	45.694	0.19214	45.694	45.646	45.838	0	1137	82	0.9369253	0.049535275	0.9369253	378.8522		20.029938	0.0073944	-0.00086844	0.00075972	NaN	2.5994	415	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42034	+		6658	9171	3847	3931							0.016574656063539805
FTQKVWQDHTR	11	Unmodified						0	0	0			REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	REV__PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	723.36785	1444.72115	-0.074684	-5.4024E-05	-3.7655	-0.0027238	-3.8402	-0.0027779	723.3651984729595	45.668	0.1921	45.679	45.607	45.8	0.011349	1137	76	0.9369253	0.045861065	0.93540585	378.8522		18.54422	-0.0073944	0.00085341	-0.00075972	NaN	2.5994	348	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32610	+		6659	9171	3847	3931							0.016574656063539805
FTSCNCVHPN	10	Unmodified	_FTSCNCVHPN_					0	0	0			REV__ZSWIM2|p.I113Dfs*13|1|0.42|ENSG00000163012|chr2:186839116-186839117|-/C|frameshift_variant	REV__ZSWIM2|p.I113Dfs*13|1|0.42|ENSG00000163012|chr2:186839116-186839117|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2287759501501	2	561.228776	1120.443	1.4062	0.00078923	4.1144	0.0023091	5.5206	0.0030983	561.232791137078	20.622	0.12042	20.622	20.573	20.694	0	1251	58	0.8670771	0.03499776	0.8670771	351.56927	0	14.190369						221	6	4	NaN	NaN	NaN	0.72631	1	13684	13684		6.2502	0	1	23980	+		6660	10267	3848	3932	5328	5328					-0.11240481242475653
FTSTGDIS	8	Unmodified	_FTSTGDIS_					0	0	0		ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.3781395730999	1	827.37814	826.370863	1.6214	0.0013415	-7.1582	-0.0059225	-5.5368	-0.004581	827.3723955757347	31.332	0.62752	31.332	31.259	31.887	0	498	169	1.3232021	0.100553036	1.3232021	269.41827	0	20.473694						1577	27	5	NaN	NaN	NaN	0.23746	1	5100	5100		47.04	5.5801	1	659450			6661	4193	3849	3933	5329	5329					-0.049267490529132374
FTSTGDIS	8	Unmodified	_FTSTGDIS_					0	0	0		ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.3781395730999	1	827.37814	826.370863	1.3363	0.0011056	-6.7072	-0.0055494	-5.3709	-0.0044438	827.3725304758141	33.069	0.24134	33.069	32.925	33.166	0	501	52	1.3214091	0.03048098	1.3214091	269.0532	0	6.2062683						279	11	3	NaN	NaN	NaN	0.62311	1	5101	5101		23.85	0	1	31214			6662	4193	3849	3933	5330	5330					-0.049267490529132374
FTSTGDIS	8	Unmodified	_FTSTGDIS_					0	0	0		ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.3781395730999	1	827.37814	826.370863	1.5388	0.0012732	-7.2744	-0.0060187	-5.7355	-0.0047455	827.3722725646504	31.331	0.62749	31.326	31.253	31.881	-0.0050716	495	157	1.3249949	0.09336078	1.3234755	269.78333	0	19.009247						1475	27	5	NaN	NaN	NaN	0.30832	1	4979	4979		41.46	7.7618	1	663590			6663	4193	3849	3933	5331	5331					-0.049267490529132374
FTSTGDIS	8	Unmodified	_FTSTGDIS_					0	0	0		ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	ENSG00000162972|ENST00000392290|MAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.3781395730999	1	827.37814	826.370863	1.0891	0.00090113	-6.4331	-0.0053226	-5.3439	-0.0044214	827.3724372881209	32.948	0.14474	32.945	32.8	32.945	-0.0024757	498	55	1.3232021	0.032275796	1.3216827	269.41827	0	6.571686						160	7	2	NaN	NaN	NaN	0.35353	1	4981	4981		38.918	5.2196	1	13126			6664	4193	3849	3933	5332	5332					-0.049267490529132374
FTTSAESP	8	Unmodified	_FTTSAESP_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.3781395731	1	839.37814	838.370863	0.96996	0.00081416	-7.7802	-0.0065306	-6.8103	-0.0057164	839.3717344665071	31.573	0.1931	31.573	31.501	31.694	0	504	61	1.3196158	0.035858154	1.3196158	268.62518	0	7.299408						189	9	2	NaN	NaN	NaN	0.57691	1	5237	5237		26.732	10.315	1	17193	+		6665	10285	3850	3934	5333	5333					-0.05478749052895182
FTTSAESP	8	Unmodified						0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.37814	838.370863	0.96996	0.00081416	-7.7802	-0.0065306	-6.8103	-0.0057164	839.3717344665071	31.573	0.1931	31.573	31.501	31.694	0	504	61	1.3196158	0.035858154	1.3196158	268.62518		7.299408	0.014811	-0.0012909	0.00075972	NaN	26.732	189	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17193	+		6666	10285	3850	3934							-0.05478749052895182
FTVALWRQR	9	Unmodified	_FTVALWRQR_					0	0	0		ENST00000374864.8_3_20:32957204-32957252:+|nuORF	ENST00000374864.8_3_20:32957204-32957252:+|nuORF	ENST00000374864.8_3_20:32957204-32957252:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8354571076501	2	588.835457	1175.65636	1.4153	0.00083336	-1.4141	-0.00083265	0.0012038	7.0886E-07	588.8353649653671	21.2	0.072296	21.2	21.175	21.248	0	1128	34	0.9424274	0.020170152	0.9424274	381.90305	0	8.1736145						88	4	3	NaN	NaN	NaN	0.077759	1	15680	15680		44.638	29.463	1	10310			6667	6690	3851	3935	5334	5334					0.07555935591039997
FTWLVMAIS	9	Unmodified	_FTWLVMAIS_					0	0	0			REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2833458221	2	534.283346	1066.55214	2.2513	0.0012029	-8.6436	-0.0046181	-6.3923	-0.0034153	534.2773759179574	23.682	0.16867	23.682	23.562	23.73	0	1266	97	0.85786515	0.05894679	0.85786515	348.04773	0	23.915497						492	8	5	NaN	NaN	NaN	0.074859	1	11408	11408		39.459	12.163	1	107200	+		6668	13637	3852	3936	5335	5335					0.021524727192854698
FTWLVMAIS	9	Unmodified						0	0	0			REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.283346	1066.55214	2.2513	0.0012029	-8.6436	-0.0046181	-6.3923	-0.0034153	534.2773759179574	23.682	0.16867	23.682	23.562	23.73	0	1266	97	0.85786515	0.05894679	0.85786515	348.04773		23.915497	-0.017428	-0.00049943	0.00075972	NaN	39.459	492	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107200	+		6669	13637	3852	3936							0.021524727192854698
FTWLVMAIS	9	Unmodified						0	0	0			REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	REV__tr|U7T8I4|U7T8I4_FUSNUAcid-resistancemembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00065PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.283346	1066.55214	1.5393	0.00082241	-7.9436	-0.0042441	-6.4043	-0.0034217	534.2778426264521	23.73	0.24098	23.717	23.524	23.765	-0.013048	1266	100	0.85786515	0.060792148	0.8563457	348.04773		24.664185	0.017428	0.0002486	-0.00075972	NaN	39.459	515	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119960	+		6670	13637	3852	3936							0.021524727192854698
FTYTGSGG	8	Unmodified	_FTYTGSGG_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000484159.5_1_9:6434093-6493966:+|nuORF;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.3413601363002	1	789.34136	788.334084	1.8581	0.0014667	7.6658	0.0060509	9.5239	0.0075176	789.3474572777516	24.888	0.12064	24.875	24.851	24.972	-0.012394	507	40	1.3178225	0.023316503	1.316303	268.53452	0	4.7512207						93	6	2	NaN	NaN	NaN	0.80071	1	4510	4510		9.1232	3.0329	1	6393.8			6671	135	3853	3937	5336	5336					-0.06855000878795181
FVAAAERFRQ	10	Unmodified	_FVAAAERFRQ_					0	0	0			REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8225466976501	2	597.822547	1193.63054	1.3832	0.0008269	-8.3582	-0.0049967	-6.975	-0.0041698	597.816863204373	19.587	0.072218	19.573	19.524	19.597	-0.014141	1089	34	0.96624947	0.0201419	0.96473	391.48816	0	8.160736						61	4	2	NaN	NaN	NaN	0.5917	1	15640	15640		15.463	1.5139	1	6172.6	+		6672	9183	3854	3938	5337	5337					0.0414704134875592
FVAAAERFRQ	10	Unmodified						0	0	0			REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.822547	1193.63054	1.4357	0.00085827	-6.6472	-0.0039739	-5.2116	-0.0031156	597.8180976337366	19.54	0.04801	19.54	19.54	19.588	0	1086	34	0.9680805	0.0201419	0.9680805	392.23004		8.160767	-0.016274	0.00060959	0.0016753	NaN	15.463	70	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6671.1	+		6673	9183	3854	3938							0.0414704134875592
FVAAAERFRQ	10	Unmodified						0	0	0			REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.822547	1193.63054	1.3832	0.0008269	-8.3582	-0.0049967	-6.975	-0.0041698	597.816863204373	19.587	0.072218	19.573	19.524	19.597	-0.014141	1089	34	0.96624947	0.0201419	0.96473	391.48816		8.160736	0.016274	-0.0014361	-0.0016753	NaN	15.463	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6172.6	+		6674	9183	3854	3938							0.0414704134875592
FVAALPAP	8	Unmodified	_FVAALPAP_					0	0	0		ENST00000548093.5_1_12:58138905-58139004:+|nuORF;ENST00000257910.7_1_12:58138905-58139534:+|nuORF	ENST00000548093.5_1_12:58138905-58139004:+|nuORF	ENST00000548093.5_1_12:58138905-58139004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.4556020330999	1	785.455602	784.448326	1.3345	0.0010482	-8.9186	-0.0070052	-7.5841	-0.005957	785.4484754684632	37.145	0.14478	37.145	37.072	37.217	0	552	49	1.2908988	0.028744817	1.2908988	263.0706	0	5.857849						145	7	3	NaN	NaN	NaN	0.83849	1	4561	4561		4.0537	0	1	16919			6675	6291	3855	3939	5338	5338					0.047479336739343125
FVAARGND	8	Unmodified	_FVAARGND_					0	0	0			REV__ENST00000436372.1_1_X:70535119-70535567:-|nuORF	REV__ENST00000436372.1_1_X:70535119-70535567:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.4213417918	1	849.421342	848.414065	0.8889	0.00075505	-9.3069	-0.0079055	-8.418	-0.0071505	849.4132614184886	29.4	0.19302	29.393	29.344	29.537	-0.0077209	459	64	1.3464937	0.037600994	1.3449743	274.0442	0	7.6526794						161	9	2	NaN	NaN	NaN	0.69898	1	5230	5230		19.118	1.3193	1	13233	+		6676	12178	3856	3940	5339	5339					-0.01620514484955038
FVAEGVAMRW	10	Unmodified	_FVAEGVAMRW_					0	0	0			REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.2947761756501	2	583.294776	1164.575	1.3292	0.00077531	3.4204	0.0019951	4.7496	0.0027704	583.2969276739707	33.045	0.1931	33.045	32.925	33.118	0	1209	58	0.892844	0.034956157	0.892844	361.8501	0	14.166962						196	9	3	NaN	NaN	NaN	0.17937	1	15299	15299		37.302	2.0059	1	27886	+		6677	12696	3857	3941	5340	5340					-0.0007050816323044273
FVAEGVAMRW	10	Unmodified						0	0	0			REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	583.294776	1164.575	1.3292	0.00077531	3.4204	0.0019951	4.7496	0.0027704	583.2969276739707	33.045	0.1931	33.045	32.925	33.118	0	1209	58	0.892844	0.034956157	0.892844	361.8501		14.166962	-0.01018	0.00046711	0.00075972	NaN	37.302	196	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27886	+		6678	12696	3857	3941							-0.0007050816323044273
FVAEYEPVL	9	Unmodified	_FVAEYEPVL_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5455392524	1	1066.54554	1065.53826	0.92982	0.0009917	-0.79989	-0.00085312	0.12993	0.00013858	1066.5453627942868	27.904	0.14479	27.895	27.87	28.015	-0.009552	135	70	1.5387528	0.04071617	1.5372335	312.15417	0	8.259766						180	7	3	NaN	NaN	NaN	0.014046	1	11104	11104		80.639	53.592	1	19647			6679	5728	3858	3942	5341	5341					0.008115184918551677
FVAGGAGG	8	Unmodified	_FVAGGAGG_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.3147514553001	1	635.314751	634.307475	1.8693	0.0011876	4.0985	0.0026038	5.9679	0.0037915	635.3171390323985	28.797	0.048275	28.789	28.765	28.813	-0.0083504	714	37	1.1936152	0.021683335	1.1920958	244.23306	0	4.436783						51	3	2	NaN	NaN	NaN	0.83849	1	1496	1496		4.0537	0	1	3923			6680	4564	3859	3943	5342	5342					-0.02430644979472163
FVAPSDIQL	9	Unmodified	_FVAPSDIQL_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.5302235392002	1	989.530224	988.522947	2.0066	0.0019856	-1.2332	-0.0012202	0.77346	0.00076536	989.5288034686557	27.688	0.096527	27.688	27.664	27.76	0	237	97	1.4784646	0.056874514	1.4784646	300.22253	0	11.549164						165	5	2	NaN	NaN	NaN	0.13602	1	8166	8166		30.61	10.055	1	26887			6681	2300	3860	3944	5343	5343					0.028226516946688207
FVAPSDIQL	9	Unmodified	_FVAPSDIQL_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.26875000290005	2	495.26875	988.522947	0.67627	0.00033494	-1.3917	-0.00068929	-0.71547	-0.00035435	495.2681495116585	27.687	0.12062	27.677	27.653	27.774	-0.009552	1311	55	0.83019954	0.033214986	0.8286801	337.1621	0	13.489319						135	6	2	NaN	NaN	NaN	0.51576	1	7999	7999		8.962	2.0988	1	21189			6682	2300	3860	3944	5344	5344					0.028226516946688207
FVAPSDIQL	9	Unmodified	_FVAPSDIQL_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.5302235392002	1	989.530224	988.522947	1.337	0.001323	0.57984	0.00057377	1.9168	0.0018967	989.5309068543037	27.687	0.096506	27.677	27.653	27.75	-0.009552	231	97	1.4820169	0.056862473	1.4804975	300.9439	0	11.546722						218	5	3	NaN	NaN	NaN	0.25448	1	8000	8000		21.835	2.7167	1	27133			6683	2300	3860	3944	5345	5345					0.028226516946688207
FVAPSDIQL	9	Unmodified						0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	495.26875	988.522947	1.5619	0.00077354	-0.82451	-0.00040835	0.73735	0.00036519	495.26830854283645	27.664	0.072372	27.664	27.639	27.712	0	1311	67	0.83019954	0.04060048	0.83019954	337.1621		16.488708	-0.0068838	0.00037199	0.00075972	NaN	8.962	150	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18572			6684	2300	3860	3944							0.028226516946688207
FVARSEERL	9	Unmodified	_FVARSEERL_					0	0	0			REV__ENST00000557773.5_1_14:35568434-35591165:-|nuORF	REV__ENST00000557773.5_1_14:35568434-35591165:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8012799393001	2	553.80128	1105.58801	1.0824	0.00059945	7.2326	0.0040054	8.315	0.0046049	553.804710710679	30.848	0.12069	30.842	30.794	30.915	-0.0057545	1188	55	0.90571284	0.033075213	0.9041934	367.29468	0	13.413025						152	6	3	NaN	NaN	NaN	0.18779	1	12732	12732		26.115	5.5595	1	28816	+		6685	8740	3861	3945	5346	5346					0.03943646220523078
FVARSFNGLR	10	Unmodified	_FVARSFNGLR_					0	0	0			REV__ENST00000494919.1_1_2:62729532-62733264:-|nuORF	REV__ENST00000494919.1_1_2:62729532-62733264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8250893866001	2	583.825089	1165.63563	1.2932	0.000755	-4.7206	-0.002756	-3.4274	-0.002001	583.8220774518509	29.473	0.16892	29.466	29.417	29.586	-0.0070667	1206	73	0.894683	0.044119358	0.89316356	362.59158	0	17.880432						338	8	3	NaN	NaN	NaN	0.59391	1	14801	14801		14.425	0	1	71838	+		6686	11011	3862	3946	5347	5347					0.059433452113808016
FVAVAVVL	8	Unmodified	_FVAVAVVL_					0	0	0			REV__ENSG00000196937|ENST00000359943|FAM3C	REV__ENSG00000196937|ENST00000359943|FAM3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.5182022899002	1	817.518202	816.510926	1.5515	0.0012684	0.24119	0.00019717	1.7927	0.0014656	817.5183452011566	34.66	0.19279	34.66	34.612	34.804	-0.00064468	423	127	1.3679651	0.07515788	1.3664457	278.58746	0	15.305969						360	9	3	NaN	NaN	NaN	0.60626	1	4868	4868		24.901	0	1	89548	+		6687	11126	3863	3947	5348	5348					0.09533079742141126
FVCLAVIAL	9	Unmodified	_FVCLAVIAL_					0	0	0			REV__ENST00000514040.1_1_5:94040842-94114865:-|nuORF	REV__ENST00000514040.1_1_5:94040842-94114865:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5586868961001	1	948.558687	947.55141	0.93422	0.00088616	-0.19616	-0.00018607	0.73806	0.00070009	948.558448948908	38.636	0.26433	38.636	38.564	38.828	0	237	70	1.4784646	0.040858984	1.4784646	300.401	0	8.30191						470	12	4	NaN	NaN	NaN	0.16059	1	7033	7033		27.861	1.1291	1	90577	+		6688	10726	3864	3948	5349	5349					0.07553678070246406
FVCVGTLA	8	Unmodified	_FVCVGTLA_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.4225873452001	1	809.422587	808.415311	1.9945	0.0016144	-8.4328	-0.0068257	-6.4382	-0.0052113	809.4191992178501	26.625	0.096571	26.625	26.577	26.674	0	450	88	1.3518641	0.05195284	1.3518641	275.35416	0	10.58197						108	5	2	NaN	NaN	NaN	0.79379	1	4869	4869		10.052	0.92837	1	7329.4	+		6689	8457	3865	3949	5350	5350					0.0034398355959410765
FVCVGTLA	8	Unmodified						0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.422587	808.415311	1.9945	0.0016144	-8.4328	-0.0068257	-6.4382	-0.0052113	809.4191992178501	26.625	0.096571	26.625	26.577	26.674	0	450	88	1.3518641	0.05195284	1.3518641	275.35416		10.58197	0	0	0	NaN	10.052	108	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7329.4	+		6690	8457	3865	3949							0.0034398355959410765
FVDEHEPSM	9	Unmodified	_FVDEHEPSM_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7291317034001	2	545.729132	1089.44371	1.6582	0.00090495	-1.5122	-0.00082526	0.14603	7.9692E-05	545.7282253921042	17.093	0.16807	17.093	17.045	17.213	0	1245	37	0.87076044	0.022097886	0.87076044	353.18484	0	8.962982						217	8	4	NaN	NaN	NaN	0.030669	1	12352	12352		58.235	32.484	1	26425			6691	4371	3866	3950	5351	5351					-0.09743363321786092
FVDEHEPSM	9	Unmodified	_FVDEHEPSM_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7291317034001	2	545.729132	1089.44371	1.6815	0.00091765	-1.0597	-0.00057831	0.62181	0.00033934	545.7283218348181	17.09	0.21599	17.077	17.029	17.245	-0.013294	1245	43	0.87076044	0.025780857	0.869241	353.18484	0	10.456818						198	10	3	NaN	NaN	NaN	0.013281	1	12042	12042		82.96	56.229	1	29048			6692	4371	3866	3950	5352	5352					-0.09743363321786092
FVDEHEPSM	9	Oxidation (M)	_FVDEHEPSM(Oxidation (M))_		FVDEHEPSM(1)		FVDEHEPSM(110)	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.72658901445	2	553.726589	1105.43863	1.6391	0.00090761	-1.2751	-0.00070607	0.36397	0.00020154	553.7260653080723	14.021	0.14404	14.021	13.973	14.117	0	1260	43	0.8615505	0.025791943	0.8615505	349.3861	0	10.459442						236	7	3	NaN	NaN	NaN	0.0018626	1	13059	13059		111.43	79.872	1	42300			6693	4371	3866	3951	5353	5353		466			-0.10987667184394923
FVDEHEPSM	9	Oxidation (M)	_FVDEHEPSM(Oxidation (M))_		FVDEHEPSM(1)		FVDEHEPSM(55)	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.72658901445	2	553.726589	1105.43863	1.3625	0.00075443	-1.2956	-0.00071742	0.066835	3.7008E-05	553.7257209225876	14.021	0.21578	14.01	13.962	14.178	-0.010672	1257	52	0.86339295	0.03132391	0.8618735	350.13324	0	12.70282						322	10	4	NaN	NaN	NaN	0.032826	1	12712	12712		55.413	34.858	1	47226			6694	4371	3866	3951	5354	5354		466			-0.10987667184394923
FVDESEPLL	9	Unmodified	_FVDESEPLL_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5197184324	1	1048.51972	1047.51244	1.8834	0.0019748	-1.2164	-0.0012754	0.66706	0.00069942	1048.5196389693358	26.891	0.16889	26.891	26.843	27.012	0	183	115	1.510409	0.06733811	1.510409	306.47168	0	13.663361						467	8	3	NaN	NaN	NaN	0.45297	1	10526	10526		11.548	3.2582	1	59593			6695	3547	3867	3952	5355	5355					-0.009413757504262321
FVDETWQQL	9	Unmodified	_FVDETWQQL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1165.5524155443	1	1165.55242	1164.54514	2.3775	0.0027711	-0.89002	-0.0010374	1.4874	0.0017337	1165.5511798625137	26.891	0.12066	26.891	26.843	26.964	0	60	61	1.582944	0.035313725	1.582944	320.76962	0	7.156006						168	6	3	NaN	NaN	NaN	0.019939	1	15292	15292		93.472	53.318	1	17477			6696	2784	3868	3953	5356	5356					-0.03055168627565763
FVDETWQQL	9	Unmodified	_FVDETWQQL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1165.5524155443	1	1165.55242	1164.54514	1.8575	0.0021651	0.26783	0.00031217	2.1254	0.0024772	1165.5546779855247	26.891	0.072392	26.88	26.856	26.928	-0.010643	60	73	1.582944	0.04238987	1.5814246	320.76962	0	8.589935						148	4	3	NaN	NaN	NaN	0.020011	1	14765	14765		91.563	55.328	1	14169			6697	2784	3868	3953	5357	5357					-0.03055168627565763
FVDEYDPTI	9	Unmodified	_FVDEYDPTI_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000174775|P01112-2|HRAS;HRAS|p.Q150Pfs*28|1|0.16|ENSG00000174775|chr11:533456-533457|-/CGGGTCTTGGCCGAGGT|frameshift_variant;nc|ENSG00000133703|P01116|KRAS;ENSG00000213281|ENST00000369535|NRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.4989829903	1	1098.49898	1097.49171	1.9277	0.0021176	0.17989	0.00019761	2.1076	0.0023152	1098.4989022738796	25.202	0.096542	25.202	25.178	25.274	0	144	88	1.533442	0.05135417	1.533442	310.96097	0	10.41394						130	5	2	NaN	NaN	NaN	0.021751	1	12728	12728		69.782	40.184	1	17291			6698	2830	3869	3954	5358	5358					-0.05313966130074732
FVDEYDPTI	9	Unmodified	_FVDEYDPTI_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000174775|P01112-2|HRAS;HRAS|p.Q150Pfs*28|1|0.16|ENSG00000174775|chr11:533456-533457|-/CGGGTCTTGGCCGAGGT|frameshift_variant;nc|ENSG00000133703|P01116|KRAS;ENSG00000213281|ENST00000369535|NRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.4989829903	1	1098.49898	1097.49171	2.1316	0.0023415	-1.4885	-0.0016351	0.6431	0.00070644	1098.4973269050183	25.201	0.072412	25.189	25.165	25.238	-0.012011	147	76	1.5316714	0.044261456	1.530152	310.60193	0	8.975616						129	4	2	NaN	NaN	NaN	0.011942	1	12394	12394		87.021	57.422	1	17786			6699	2830	3869	3954	5359	5359					-0.05313966130074732
FVDFEGISL	9	Unmodified	_FVDFEGISL_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5142391240001	1	1026.51424	1025.50696	1.7601	0.0018067	2.1427	0.0021995	3.9028	0.0040063	1026.5173033268381	32.804	0.16892	32.804	32.756	32.925	0	183	109	1.510409	0.06380761	1.510409	306.55713	0	12.950562						381	8	4	NaN	NaN	NaN	0.055351	1	9595	9595		44.638	4.4847	1	78710			6700	2162	3870	3955	5360	5360					-0.004770545422161376
FVDPAQITM	9	Oxidation (M)	_FVDPAQITM(Oxidation (M))_		FVDPAQITM(1)		FVDPAQITM(56)	0	0	1		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2522426589501	2	519.252243	1036.48993	2.1108	0.001096	-3.3061	-0.0017167	-1.1953	-0.00062069	519.2509054274668	23.369	0.24119	23.369	23.248	23.489	0	1302	67	0.8357362	0.04060048	0.8357362	339.19504	0	16.478241						379	11	5	NaN	NaN	NaN	0.032689	1	10055	10055		55.592	16.133	1	67844			6701	4540	3871	3956	5361	5361		481			-0.02685298419692117
FVDPAQITM	9	Oxidation (M)	_FVDPAQITM(Oxidation (M))_		FVDPAQITM(1)		FVDPAQITM(110)	0	0	1		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4972088513	1	1037.49721	1036.48993	2.0392	0.0021157	-1.4867	-0.0015425	0.55246	0.00057317	1037.4962600435724	23.345	0.21708	23.345	23.272	23.489	0	207	97	1.496219	0.056814194	1.496219	303.6344	0	11.529541						378	10	4	NaN	NaN	NaN	0.0014219	1	10057	10057		112.76	70.443	1	57875			6702	4540	3871	3956	5362	5362		481			-0.02685298419692117
FVDPAQITM	9	Oxidation (M)	_FVDPAQITM(Oxidation (M))_		FVDPAQITM(1)		FVDPAQITM(72)	0	0	1		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2522426589501	2	519.252243	1036.48993	1.8331	0.00095182	-1.5751	-0.00081788	0.25796	0.00013394	519.2517467430897	23.368	0.19303	23.355	23.283	23.476	-0.013294	1302	58	0.8357362	0.035062134	0.8342168	339.19504	0	14.230438						319	9	4	NaN	NaN	NaN	0.019939	1	9845	9845		72.076	42.478	1	62645			6703	4540	3871	3956	5363	5363		481			-0.02685298419692117
FVDPAQITM	9	Oxidation (M)	_FVDPAQITM(Oxidation (M))_		FVDPAQITM(1)		FVDPAQITM(100)	0	0	1		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.4972088513	1	1037.49721	1036.48993	1.8015	0.001869	-0.26308	-0.00027294	1.5384	0.0015961	1037.497722661602	23.368	0.16889	23.355	23.283	23.451	-0.013294	207	106	1.496219	0.06215048	1.4946996	303.6344	0	12.612457						390	8	4	NaN	NaN	NaN	0.0040343	1	9847	9847		104.89	38.234	1	55100			6704	4540	3871	3956	5364	5364		481			-0.02685298419692117
FVDPNGKISL	10	Unmodified	_FVDPNGKISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3005814475501	2	545.300581	1088.58661	1.8434	0.0010052	-1.4681	-0.00080054	0.37532	0.00020466	545.3000822784746	22.187	0.12059	22.187	22.163	22.284	0	1245	97	0.87076044	0.058927655	0.87076044	353.18832	0	23.90158						317	6	3	NaN	NaN	NaN	0.042793	1	12336	12336		54.277	16.975	1	152600			6705	1651	3872	3957	5365	5365					0.045860121317673475
FVDPNGKISL	10	Unmodified	_FVDPNGKISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3005814475501	2	545.300581	1088.58661	1.4358	0.00078294	-0.17807	-9.7101E-05	1.2577	0.00068584	545.3004597947313	22.211	0.14474	22.197	22.125	22.27	-0.013731	1248	94	0.8689189	0.05709541	0.86739945	352.44135	0	23.158417						363	7	4	NaN	NaN	NaN	0.095478	1	12032	12032		46.588	9.2854	1	166850			6706	1651	3872	3957	5366	5366					0.045860121317673475
FVDPSQDHAL	10	Unmodified	_FVDPSQDHAL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.7696454599001	2	564.769645	1127.52474	2.3437	0.0013237	-2.7079	-0.0015293	-0.36416	-0.00020567	564.7697225277429	18.892	0.24003	18.892	18.748	18.988	0	1242	64	0.87260187	0.038660824	0.87260187	353.7824	0	15.674408						408	11	5	NaN	NaN	NaN	0.1802	1	13993	13993		37.231	14.113	1	62313			6707	2641	3873	3958	5367	5367					-0.03392339287370305
FVDPSQDHAL	10	Unmodified	_FVDPSQDHAL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7696454599001	2	564.769645	1127.52474	1.543	0.00087141	-0.35467	-0.00020031	1.1883	0.00067111	564.7688922060081	18.914	0.21623	18.9	18.828	19.044	-0.014059	1242	55	0.87260187	0.033143222	0.8710824	353.7824	0	13.437347						237	10	3	NaN	NaN	NaN	0.26393	1	13550	13550		30.035	5.4734	1	41068			6708	2641	3873	3958	5368	5368					-0.03392339287370305
FVDVVADIL	9	Unmodified	_FVDVVADIL_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5506246303001	1	990.550625	989.543348	0.8767	0.00086842	0.27826	0.00027563	1.155	0.001144	990.5505053289328	31.741	0.12071	31.737	31.664	31.785	-0.0044155	174	124	1.5157272	0.07272756	1.5142077	307.78485	0	14.768127						250	6	2	NaN	NaN	NaN	0.10956	1	8034	8034		34.439	2.8777	1	46409			6709	13860	3874	3959	5369	5369					0.04815822354487409
FVEDSKVVL	9	Unmodified	_FVEDSKVVL_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2896824102501	2	518.289682	1034.56481	1.5944	0.00082635	-6.0373	-0.0031291	-4.4429	-0.0023027	518.2857182554383	21.127	0.12049	21.127	21.103	21.224	0	1275	67	0.85233563	0.040569723	0.85233563	345.94058	0	16.466187						218	6	3	NaN	NaN	NaN	0.10945	1	9982	9982		34.454	8.339	1	45065			6710	5053	3875	3960	5370	5370					0.04891207383184337
FVEELEAVL	9	Unmodified	_FVEELEAVL_					0	0	0		VPS53-ABR|1|fusion;ENST00000571456.1_1_17:609254-617949:-|nuORF;ENST00000575207.5_1_17:560762-617949:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	VPS53-ABR|1|fusion;nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5561039386998	1	1048.5561	1047.54883	1.376	0.0014428	0.081271	8.5217E-05	1.4573	0.0015281	1048.5559442626288	31.477	0.16896	31.477	31.428	31.597	0	153	73	1.5281296	0.042502284	1.5281296	310.06714	0	8.623993						238	8	2	NaN	NaN	NaN	0.030391	1	10537	10537		58.599	5.8409	1	51524			6711	3308;14023	3876	3961	5371	5371					0.026955011462860057
FVEELEAVL	9	Unmodified	_FVEELEAVL_					0	0	0		VPS53-ABR|1|fusion;ENST00000571456.1_1_17:609254-617949:-|nuORF;ENST00000575207.5_1_17:560762-617949:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	VPS53-ABR|1|fusion;nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5561039386998	1	1048.5561	1047.54883	0.97809	0.0010256	-1.2699	-0.0013316	-0.29185	-0.00030602	1048.5546585274294	31.476	0.28961	31.471	31.375	31.664	-0.0044155	150	76	1.5299006	0.044275522	1.5283811	310.4265	0	8.983795						350	13	3	NaN	NaN	NaN	0.02781	1	10319	10319		61.977	14.841	1	54123			6712	3308;14023	3876	3961	5372	5372					0.026955011462860057
FVEELEAVL	9	Unmodified	_FVEELEAVL_					0	0	0		VPS53-ABR|1|fusion;ENST00000571456.1_1_17:609254-617949:-|nuORF;ENST00000575207.5_1_17:560762-617949:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	VPS53-ABR|1|fusion;nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.78169020265	2	524.78169	1047.54883	0.65288	0.00034262	-0.54143	-0.00028413	0.11145	5.8485E-05	524.7809861983534	31.476	0.072401	31.471	31.447	31.519	-0.0044155	1254	43	0.8652351	0.025789201	0.86371565	351.11896	0	10.465454						116	4	3	NaN	NaN	NaN	0.030391	1	10321	10321		58.599	29.001	1	14795			6713	3308;14023	3876	3961	5373	5373					0.026955011462860057
FVEFEGSG	8	Unmodified	_FVEFEGSG_					0	0	0			REV__ENST00000378204.6_1_8:119123356-119123449:-|nuORF	REV__ENST00000378204.6_1_8:119123356-119123449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.1952507088001	2	436.195251	870.375948	1.1201	0.00048859	-1.0554	-0.00046037	0.064696	2.822E-05	436.1944386188396	21.898	0.12048	21.884	21.86	21.98	-0.013895	1392	37	0.780288	0.022215366	0.77876854	317.48157	0	9.03894						100	6	2	NaN	NaN	NaN	0.75682	1	5523	5523		15.013	0	1	9178.8	+		6714	11951	3877	3962	5374	5374					-0.06442445190259605
FVEFEGSG	8	Unmodified						0	0	0			REV__ENST00000378204.6_1_8:119123356-119123449:-|nuORF	REV__ENST00000378204.6_1_8:119123356-119123449:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	436.195251	870.375948	1.1201	0.00048859	-1.0554	-0.00046037	0.064696	2.822E-05	436.1944386188396	21.898	0.12048	21.884	21.86	21.98	-0.013895	1392	37	0.780288	0.022215366	0.77876854	317.48157		9.03894	-0.0070647	-8.6283E-05	0.00016597	NaN	15.013	100	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9178.8	+		6715	11951	3877	3962							-0.06442445190259605
FVEGLIVTL	9	Unmodified	_FVEGLIVTL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5870101366003	1	990.58701	989.579734	1.3468	0.0013341	-1.2217	-0.0012102	0.12505	0.00012387	990.5855684073247	33.528	0.096397	33.528	33.504	33.6	0	183	70	1.510409	0.04078543	1.510409	306.70477	0	8.281921						176	5	4	NaN	NaN	NaN	0.10956	1	8213	8213		34.439	6.65	1	31412			6716	2470	3878	3963	5375	5375					0.08452699251199647
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.27911772395004	2	488.279118	974.543683	1.6527	0.000807	-2.4323	-0.0011876	-0.77952	-0.00038062	488.2779593312257	29.618	0.072376	29.618	29.594	29.667	0	1308	34	0.83204526	0.020303547	0.83204526	337.97824	0	8.247314						67	4	2	NaN	NaN	NaN	0.23112	1	7742	7742		23.334	2.779	1	6195.4			6717	4169	3879	3964	5376	5376					0.055392420743373805
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.5509589813001	1	975.550959	974.543683	1.9063	0.0018597	-0.26634	-0.00025983	1.64	0.0015999	975.550792596863	29.618	0.14482	29.618	29.57	29.715	0	237	115	1.4784646	0.06751704	1.4784646	300.28174	0	13.712982						338	7	3	NaN	NaN	NaN	0.021751	1	7743	7743		69.782	30.323	1	76000			6718	4169	3879	3964	5377	5377					0.055392420743373805
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.27911772395004	2	488.279118	974.543683	1.0373	0.00050648	-2.47	-0.001206	-1.4327	-0.00069956	488.27763230743767	29.618	0.072392	29.61	29.586	29.659	-0.0070648	1305	40	0.83389086	0.023992479	0.8323714	338.7279	0	9.745789						100	4	3	NaN	NaN	NaN	0.089764	1	7584	7584		37.302	13.452	1	12065			6719	4169	3879	3964	5378	5378					0.055392420743373805
FVELGQVAL	9	Unmodified	_FVELGQVAL_					0	0	0		ENST00000459963.5_1_1:160321502-160323118:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	ENST00000459963.5_1_1:160321502-160323118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5509589813001	1	975.550959	974.543683	1.4287	0.0013938	-0.028646	-2.7946E-05	1.4001	0.0013659	975.5509840539346	29.618	0.2413	29.61	29.562	29.803	-0.0070648	237	91	1.4784646	0.053302884	1.4769452	300.28174	0	10.826019						332	11	3	NaN	NaN	NaN	0.02857	1	7586	7586		60.982	16.679	1	70376			6720	4169	3879	3964	5379	5379					0.055392420743373805
FVETGGLTVL	10	Unmodified	_FVETGGLTVL_					0	0	0		AluJr_dup39110|chr8:143020241-143020533:-|1.731685755495994|0.0573479168884429|4.92|522.0|16|2|anti-sense	AluJr_dup39110|chr8:143020241-143020533:-|1.731685755495994|0.0573479168884429|4.92|522.0|16|2|anti-sense	AluJr_dup39110|chr8:143020241-143020533:-|1.731685755495994|0.0573479168884429|4.92|522.0|16|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2896824102501	2	518.289682	1034.56481	1.1221	0.00058156	-4.8874	-0.0025331	-3.7653	-0.0019515	518.286665486132	21.152	0.12042	21.138	21.089	21.21	-0.014004	1275	64	0.85233563	0.038723588	0.8508162	345.94058	0	15.716888						223	6	4	NaN	NaN	NaN	0.60686	1	9773	9773		14.425	0.47625	1	42975			6721	24	3880	3965	5380	5380					0.04891207383184337
FVFDLPIHR	9	Unmodified	_FVFDLPIHR_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.88183119	3	381.881831	1142.62366	1.8683	0.00071347	-3.2741	-0.0012503	-1.4058	-0.00053686	381.88066763901173	25.539	0.048237	25.539	25.515	25.564	0	1485	31	0.72280174	0.018573165	0.72280174	439.49774	0	11.293335						58	3	3	NaN	NaN	NaN	0.12104	1	14559	14559		32.778	17.924	1	6039.1			6722	2133	3881	3966	5381	5381					0.058057284681808596
FVFDLPIHR	9	Unmodified	_FVFDLPIHR_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.88183119	3	381.881831	1142.62366	2.2039	0.00084163	-1.064	-0.00040631	1.1399	0.00043532	381.8817077356692	25.588	0.072378	25.576	25.552	25.624	-0.0116	1482	37	0.72465914	0.022287786	0.7231397	440.62714	0	13.552032						61	4	2	NaN	NaN	NaN	0.17328	1	14078	14078		27.046	13.583	1	7068.2			6723	2133	3881	3966	5382	5382					0.058057284681808596
FVFDRPVHR	9	Unmodified	_FVFDRPVHR_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.54896351783333	3	391.548964	1171.62506	1.3929	0.00054539	-1.4477	-0.00056684	-0.054797	-2.1456E-05	391.5482786937175	15.606	0.09607	15.606	15.582	15.678	0	1515	91	0.7042165	0.055737555	0.7042165	428.07083	0	33.881134						202	5	3	NaN	NaN	NaN	0.14787	1	15549	15549		20.688	13.1	1	20176			6724	2134	3882	3967	5383	5383					0.04611362556943277
FVFDRPVHR	9	Unmodified	_FVFDRPVHR_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.54896351783333	3	391.548964	1171.62506	2.328	0.00091151	-2.974	-0.0011645	-0.64609	-0.00025297	391.5475815305569	15.82	0.04792	15.807	15.759	15.807	-0.012611	1515	55	0.7042165	0.033464313	0.70269704	428.07086	0	20.341888						58	3	2	NaN	NaN	NaN	0.089764	1	15002	15002		32.778	20.471	1	4996.8			6725	2134	3882	3967	5384	5384					0.04611362556943277
FVFGPCDKL	9	Unmodified	_FVFGPCDKL_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2598707258	2	513.259871	1024.50519	1.4395	0.00073883	8.1533	0.0041848	9.5928	0.0049236	513.2647212910132	26.287	0.21713	26.276	26.228	26.445	-0.011137	1281	46	0.84864825	0.027659655	0.8471288	344.48834	0	11.227783						255	10	4	NaN	NaN	NaN	0.18779	1	9370	9370		26.115	1.1539	1	33813	+		6726	10322	3883	3968	5385	5385					-0.006083868318455643
FVFGPCDKL	9	Unmodified						0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.259871	1024.50519	2.3563	0.0012094	7.6611	0.0039321	10.017	0.0051415	513.2639342189617	26.263	0.14481	26.263	26.215	26.36	0	1281	46	0.84864825	0.027662694	0.84864825	344.48834		11.229004	-0.0063896	-0.00028778	0.00075972	NaN	26.115	161	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26240	+		6727	10322	3883	3968							-0.006083868318455643
FVFGPCDKL	9	Unmodified						0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.259871	1024.50519	1.4395	0.00073883	8.1533	0.0041848	9.5928	0.0049236	513.2647212910132	26.287	0.21713	26.276	26.228	26.445	-0.011137	1281	46	0.84864825	0.027659655	0.8471288	344.48834		11.227783	0.0063896	0.0002175	-0.00075972	NaN	26.115	255	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33813	+		6728	10322	3883	3968							-0.006083868318455643
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5920955145002	1	1034.5921	1033.58482	2.8734	0.0029728	-2.0345	-0.0021049	0.83888	0.0008679	1034.590183768178	38.441	0.07206	38.445	38.397	38.469	0.0040245	144	31	1.533442	0.017707348	1.5319226	311.19974	0	3.593567						31	4	2	NaN	NaN	NaN	0.20577	1	9736	9736		24.961	10.919	1	1706.1			6729	1524	3884	3969	5386	5386					0.06937003113830542
FVFSFGCLL	9	Unmodified	_FVFSFGCLL_					0	0	0			REV__ENST00000290075.10_1_8:23423868-23424183:+|nuORF	REV__ENST00000290075.10_1_8:23423868-23424183:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5223013898	1	1032.5223	1031.51502	0.92773	0.0009579	-2.2864	-0.0023608	-1.3587	-0.0014029	1032.5195523806442	31.862	0.36196	31.857	31.785	32.147	-0.0044155	120	133	1.5476005	0.07792091	1.5460811	314.08136	0	15.813873						781	16	3	NaN	NaN	NaN	0.17818	1	9631	9631		26.732	1.8304	1	170270	+		6730	11623	3885	3970	5387	5387					0.0005280117354686809
FVFSFGCLL	9	Unmodified						0	0	0			REV__ENST00000290075.10_1_8:23423868-23424183:+|nuORF	REV__ENST00000290075.10_1_8:23423868-23424183:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.5223	1031.51502	0.92773	0.0009579	-2.2864	-0.0023608	-1.3587	-0.0014029	1032.5195523806442	31.862	0.36196	31.857	31.785	32.147	-0.0044155	120	133	1.5476005	0.07792091	1.5460811	314.08136		15.813873	-0.014792	0.00011227	0.00012485	NaN	26.732	781	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170270	+		6731	11623	3885	3970							0.0005280117354686809
FVGAVDPIM	9	Oxidation (M)	_FVGAVDPIM(Oxidation (M))_		FVGAVDPIM(1)		FVGAVDPIM(90)	0	0	1		ENST00000496336.1_1_7:65540843-65547929:+|nuORF;ENST00000487982.5_1_7:65541068-65551857:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000496336.1_1_7:65540843-65547929:+|nuORF	ENST00000496336.1_1_7:65540843-65547929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4808305056002	1	964.480831	963.473554	1.362	0.0013136	-0.70644	-0.00068135	0.65554	0.00063226	964.4804118445353	24.164	0.096588	24.164	24.14	24.237	0	366	94	1.4019053	0.055270195	1.4019053	284.7779	0	11.227417						151	5	3	NaN	NaN	NaN	0.011118	1	7427	7427		89.521	57.068	1	13169			6732	2506	3886	3971	5388	5388		292			-0.009643795857755322
FVGAVDPIM	9	Oxidation (M)	_FVGAVDPIM(Oxidation (M))_		FVGAVDPIM(1)		FVGAVDPIM(83)	0	0	1		ENST00000496336.1_1_7:65540843-65547929:+|nuORF;ENST00000487982.5_1_7:65541068-65551857:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000496336.1_1_7:65540843-65547929:+|nuORF	ENST00000496336.1_1_7:65540843-65547929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4808305056002	1	964.480831	963.473554	1.4331	0.0013822	-0.81443	-0.0007855	0.61868	0.00059671	964.4799095286244	24.188	0.072329	24.175	24.127	24.199	-0.012749	363	85	1.4036897	0.049934745	1.4021703	285.14035	0	10.143555						145	4	3	NaN	NaN	NaN	0.013314	1	7274	7274		82.858	53.963	1	12468			6733	2506	3886	3971	5389	5389		292			-0.009643795857755322
FVGAVFVLF	9	Unmodified	_FVGAVFVLF_					0	0	0			REV__ENST00000343105.9_1_2:191381046-191390059:-|nuORF	REV__ENST00000343105.9_1_2:191381046-191390059:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5709661419003	1	998.570966	997.56369	1.0722	0.0010706	0.15528	0.00015506	1.2274	0.0012257	998.57099332556	38.78	0.12012	38.78	38.732	38.852	0	147	31	1.5316714	0.017707348	1.5316714	310.98816	0	3.5952759						57	6	2	NaN	NaN	NaN	0.16059	1	8495	8495		27.861	0	1	3808.4	+		6734	11084	3887	3972	5390	5390					0.06481037804962853
FVGAVLSL	8	Unmodified	_FVGAVLSL_					0	0	0		ENST00000278071.6_1_10:106073930-106074131:-|nuORF	ENST00000278071.6_1_10:106073930-106074131:-|nuORF	ENST00000278071.6_1_10:106073930-106074131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4818167836003	1	805.481817	804.47454	1.3662	0.0011005	-0.4528	-0.00036472	0.91342	0.00073575	805.481163296122	31.476	0.072401	31.471	31.447	31.519	-0.0044155	441	43	1.3572328	0.025049925	1.3557134	276.47025	0	5.1026917						63	4	2	NaN	NaN	NaN	0.78605	1	4713	4713		11.091	0	1	5079.3			6735	6354	3888	3973	5391	5391					0.06448202845444939
FVGGGGRG	8	Unmodified	_FVGGGGRG_					0	0	0			REV__ENST00000528273.5_1_17:43509052-43510583:-|nuORF	REV__ENST00000528273.5_1_17:43509052-43510583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3630986314001	1	706.363099	705.355822	1.1953	0.0008443	-7.0027	-0.0049465	-5.8075	-0.0041022	706.3582423446312	25.008	0.24126	24.996	24.948	25.189	-0.012011	741	61	1.1773466	0.036162257	1.1758271	240.39209	0	7.3836517						198	11	2	NaN	NaN	NaN	0.84727	1	3255	3255		1.2418	0	1	18323	+		6736	12637	3889	3974	5392	5392					-0.008641513395673428
FVGLDIEM	8	Unmodified	_FVGLDIEM_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.4542814041	1	923.454281	922.447005	1.0068	0.00092977	-0.56863	-0.0005251	0.43821	0.00040467	923.4543830266557	31.308	0.19309	31.308	31.259	31.452	0	309	100	1.435777	0.05880475	1.435777	291.84125	0	11.952881						321	9	3	NaN	NaN	NaN	0.078841	1	6443	6443		69.745	36.046	1	47096			6737	2044	3890	3975	5393	5393					-0.01732068477122084
FVGLDIEM	8	Unmodified	_FVGLDIEM_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.4542814041	1	923.454281	922.447005	0.69166	0.00063871	0.38153	0.00035233	1.0732	0.00099104	923.4548184374116	31.283	0.16889	31.277	31.253	31.422	-0.0050716	306	112	1.4375578	0.065939665	1.4360384	292.20322	0	13.403137						322	8	4	NaN	NaN	NaN	0.09307	1	6323	6323		65.672	27.064	1	45731			6738	2044	3890	3975	5394	5394					-0.01732068477122084
FVGLDIEM	8	Oxidation (M)	_FVGLDIEM(Oxidation (M))_		FVGLDIEM(1)		FVGLDIEM(110)	0	0	1		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4491960262001	1	939.449196	938.44192	1.3527	0.0012708	0.24234	0.00022766	1.5951	0.0014985	939.4494261473768	26.795	0.12115	26.795	26.746	26.867	0	303	85	1.4393384	0.049860477	1.4393384	292.49182	0	10.132294						252	6	2	NaN	NaN	NaN	0.0092318	1	6778	6778		114.61	44.863	1	47939			6739	2044	3890	3976	5395	5395		234			-0.029763723397422837
FVGLDIEM	8	Oxidation (M)	_FVGLDIEM(Oxidation (M))_		FVGLDIEM(1)		FVGLDIEM(100)	0	0	1		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4491960262001	1	939.449196	938.44192	1.5885	0.0014924	-0.70056	-0.00065814	0.88799	0.00083422	939.448863570704	26.794	0.16893	26.783	26.759	26.928	-0.010645	297	100	1.4428991	0.058779716	1.4413797	293.21542	0	11.944794						317	8	3	NaN	NaN	NaN	0.034452	1	6640	6640		101.55	48.23	1	47115			6740	2044	3890	3976	5396	5396		234			-0.029763723397422837
FVGTGGAG	8	Unmodified	_FVGTGGAG_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3253161416001	1	665.325316	664.31804	1.6657	0.0011082	7.8113	0.005197	9.477	0.0063053	665.3300257707202	28.532	0.16891	28.532	28.508	28.677	0	714	58	1.1936152	0.034333944	1.1936152	244.0003	0	7.01857						111	8	2	NaN	NaN	NaN	0.81807	1	2431	2431		6.794	0.70367	1	9277.3	+		6741	9637	3891	3977	5397	5397					-0.027546623250486846
FVGTGGAG	8	Unmodified	_FVGTGGAG_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3253161416001	1	665.325316	664.31804	1.5996	0.0010642	7.9761	0.0053067	9.5757	0.006371	665.3298702827929	28.556	0.12063	28.547	28.499	28.62	-0.0083504	711	52	1.1954219	0.0307132	1.1939025	244.36963	0	6.278427						111	6	2	NaN	NaN	NaN	0.84207	1	2345	2345		3.5732	1.9029	1	9320.7	+		6742	9637	3891	3977	5398	5398					-0.027546623250486846
FVGTGGAG	8	Unmodified						0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	665.325316	664.31804	1.6657	0.0011082	7.8113	0.005197	9.477	0.0063053	665.3300257707202	28.532	0.16891	28.532	28.508	28.677	0	714	58	1.1936152	0.034333944	1.1936152	244.0003		7.01857	-0.0075245	-6.478E-05	-0.00014361	NaN	6.794	111	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9277.3	+		6743	9637	3891	3977							-0.027546623250486846
FVGTGGAG	8	Unmodified						0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	665.325316	664.31804	1.5996	0.0010642	7.9761	0.0053067	9.5757	0.006371	665.3298702827929	28.556	0.12063	28.547	28.499	28.62	-0.0083504	711	52	1.1954219	0.0307132	1.1939025	244.36963		6.278427	0.0075245	4.4906E-05	0.00014361	NaN	6.794	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9320.7	+		6744	9637	3891	3977							-0.027546623250486846
FVGVLPSIYYY	11	Unmodified	_FVGVLPSIYYY_					0	0	0			REV__ENSG00000136052|ENST00000258538|SLC41A2	REV__ENSG00000136052|ENST00000258538|SLC41A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.8473644646501	2	660.847364	1319.68018	0.84607	0.00055913	-0.30931	-0.00020441	0.53676	0.00035472	660.8474021512213	37.506	0.048267	37.506	37.482	37.53	0	1170	61	0.91673553	0.036726475	0.91673553	371.02127	0	14.863922						63	3	2	NaN	NaN	NaN	0.77278	1	19109	19109		1.5054	0	1	5132.9	+		6745	9646	3892	3978	5399	5399					0.033123115141961534
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.815867371	2	559.815867	1117.61718	2.0846	0.001167	2.0173	0.0011293	4.1019	0.0022963	559.8163099884694	29.98	0.28962	29.98	29.884	30.173	0	1185	115	0.90755045	0.06978786	0.90755045	367.99112	0	28.297424						633	13	4	NaN	NaN	NaN	0.032417	1	13591	13591		55.947	27.052	1	139470			6746	170;3312	3893	3979	5400	5400					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.815867371	2	559.815867	1117.61718	1.2554	0.00070279	2.3462	0.0013134	3.6016	0.0020162	559.8170351549004	30.004	0.24132	29.997	29.949	30.19	-0.0064106	1182	109	0.9093879	0.06611484	0.90786844	368.73615	0	26.808044						517	11	3	NaN	NaN	NaN	0.12945	1	13191	13191		31.561	10.609	1	131770			6747	170;3312	3893	3979	5401	5401					0.06307790516780187
FVHGGIQTLFI	11	Unmodified	_FVHGGIQTLFI_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.2326410236667	3	411.232641	1230.67609	0.92019	0.00037841	0.1875	7.7107E-05	1.1077	0.00045552	411.23277585424745	21.079	0.33704	21.065	20.945	21.282	-0.014004	1482	40	0.72465914	0.024143755	0.7231397	440.25165	0	14.66803						356	15	4	NaN	NaN	NaN	0.59385	1	16565	16565		7.2894	0	1	42035			6748	8053	3894	3980	5402	5402					0.0699826681113791
FVHLGTPFL	9	Unmodified	_FVHLGTPFL_					0	0	0			REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7896526205001	2	515.789653	1029.56475	1.7903	0.00092342	-3.2416	-0.001672	-1.4513	-0.00074857	515.7882189861498	28.822	0.12067	28.822	28.798	28.918	0	1263	58	0.85970795	0.03500533	0.85970795	348.95508	0	14.208618						212	6	4	NaN	NaN	NaN	0.55027	1	9767	9767		7.5404	1.45	1	32932	+		6749	12463	3895	3981	5403	5403					0.051152521738458745
FVHLGTPFL	9	Unmodified						0	0	0			REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.789653	1029.56475	1.7903	0.00092342	-3.2416	-0.001672	-1.4513	-0.00074857	515.7882189861498	28.822	0.12067	28.822	28.798	28.918	0	1263	58	0.85970795	0.03500533	0.85970795	348.95508		14.208618	-0.0075112	-0.00081478	0.00075972	NaN	7.5404	212	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32932	+		6750	12463	3895	3981							0.051152521738458745
FVHLGTPFL	9	Unmodified						0	0	0			REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	REV__ENST00000491166.1_1_13:114201574-114203850:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.789653	1029.56475	0.99223	0.00051178	-1.5488	-0.00079884	-0.55655	-0.00028706	515.7889719068656	28.845	0.12068	28.837	28.789	28.909	-0.0083504	1263	61	0.85970795	0.036849678	0.8581885	348.95505		14.957275	0.0075112	0.00093151	-0.00075972	NaN	7.5404	208	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34132	+		6751	12463	3895	3981							0.051152521738458745
FVHQGETEL	9	Unmodified	_FVHQGETEL_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2589135981001	2	530.258914	1058.50327	1.953	0.0010356	-3.3384	-0.0017702	-1.3854	-0.00073461	530.2575764853127	16.182	0.21606	16.182	16.134	16.35	0	1254	97	0.8652351	0.059004188	0.8652351	351.07184	0	23.941132						322	10	4	NaN	NaN	NaN	0.042816	1	11015	11015		49.961	19.351	1	69247			6752	1540	3896	3982	5404	5404					-0.023637243160919752
FVHQGETEL	9	Unmodified	_FVHQGETEL_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2589135981001	2	530.258914	1058.50327	1.6827	0.00089227	-3.3937	-0.0017995	-1.711	-0.00090726	530.2583349729335	16.179	0.19182	16.166	16.142	16.334	-0.012993	1254	97	0.8652351	0.059010506	0.86371565	351.07184	0	23.943695						366	9	4	NaN	NaN	NaN	0.089764	1	10777	10777		37.302	2.8636	1	75751			6753	1540	3896	3982	5405	5405					-0.023637243160919752
FVIDGFDEL	9	Unmodified	_FVIDGFDEL_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5091537461	1	1054.50915	1053.50188	1.9917	0.0021003	1.3599	0.001434	3.3516	0.0035343	1054.5092226070115	32.539	0.19305	32.539	32.49	32.683	0	138	88	1.5369828	0.051321507	1.5369828	311.8406	0	10.41272						401	9	3	NaN	NaN	NaN	0.01047	1	10784	10784		91.429	44.107	1	87699			6754	463	3897	3983	5406	5406					-0.022733584048410194
FVIDGFDEL	9	Unmodified	_FVIDGFDEL_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5091537461	1	1054.50915	1053.50188	1.3136	0.0013852	1.8228	0.0019221	3.1364	0.0033073	1054.509104919754	32.537	0.26544	32.534	32.438	32.703	-0.0031052	135	94	1.5387528	0.05486095	1.5372335	312.19974	0	11.130829						558	12	4	NaN	NaN	NaN	0.021105	1	10562	10562		70.6	28.815	1	98870			6755	463	3897	3983	5407	5407					-0.022733584048410194
FVIGREEVL	9	Unmodified	_FVIGREEVL_					0	0	0		nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF	nc|ENSG00000103037|Q8TBK2-2|SETD6	nc|ENSG00000103037|Q8TBK2-2|SETD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3031241365001	2	531.303124	1060.5917	1.6829	0.00089413	-2.9846	-0.0015857	-1.3017	-0.00069158	531.3015348444064	24.092	0.12064	24.092	24.019	24.14	0	1248	88	0.8689189	0.053434968	0.8689189	352.55762	0	21.680847						281	6	4	NaN	NaN	NaN	0.17328	1	11142	11142		27.046	6.491	1	51008			6756	1407	3898	3984	5408	5408					0.06382315994369492
FVIGREEVL	9	Unmodified						0	0	0		nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF	nc|ENSG00000103037|Q8TBK2-2|SETD6	nc|ENSG00000103037|Q8TBK2-2|SETD6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.303124	1060.5917	0.9812	0.00052131	-1.2594	-0.00066914	-0.27824	-0.00014783	531.3029312407015	24.116	0.07242	24.103	24.055	24.127	-0.012749	1248	79	0.8689189	0.047899425	0.86739945	352.55762		19.434845	0.005599	0.00087449	-0.00075972	NaN	27.046	201	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40595			6757	1407	3898	3984							0.06382315994369492
FVILVENAL	9	Unmodified	_FVILVENAL_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.5979091739001	1	1017.59791	1016.59063	1.1745	0.0011952	-1.7975	-0.0018291	-0.62296	-0.00063393	1017.5956511356113	32.127	0.096489	32.123	32.099	32.196	-0.0037575	150	79	1.5299006	0.04606366	1.5283811	310.54935	0	9.350311						188	5	3	NaN	NaN	NaN	0.025843	1	9072	9072		64.55	22.232	1	30534			6758	758	3899	3985	5409	5409					0.08300101625468415
FVILVENAL	9	Unmodified	_FVILVENAL_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.30259282025	2	509.302593	1016.59063	0.77635	0.0003954	-0.90737	-0.00046212	-0.13102	-6.6727E-05	509.30224691760753	32.127	0.072353	32.123	32.099	32.172	-0.0037575	1275	58	0.85233563	0.035016656	0.8508162	346.02087	0	14.215637						94	4	3	NaN	NaN	NaN	0.29681	1	9073	9073		19.118	11.528	1	7072.3			6759	758	3899	3985	5410	5410					0.08300101625468415
FVIVMVHCI	9	Unmodified	_FVIVMVHCI_					0	0	0		ENST00000518820.1_1_8:143599542-143620974:+|nuORF;nc|ENSG00000135298|O60242-2|ADGRB3;ADGRB3|p.D1453Gfs*26|1|0.38|ENSG00000135298|chr6:69382909-69382910|-/G|frameshift_variant;ENSG00000135298|ENST00000370598|ADGRB3;ENSG00000181790|ENST00000517894|ADGRB1	ENST00000518820.1_1_8:143599542-143620974:+|nuORF	ENST00000518820.1_1_8:143599542-143620974:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7877410957501	2	530.787741	1059.56093	1.0468	0.00055563	-3.108	-0.0016497	-2.0612	-0.0010941	530.7862312622291	20.092	0.072136	20.078	20.054	20.126	-0.014141	1242	70	0.87260187	0.04236573	0.8710824	354.05637	0	17.189789						181	4	3	NaN	NaN	NaN	0.6762	1	10836	10836		1.2418	0	1	17610			6760	14	3900	3986	5411	5411					0.033531230841390425
FVKCCVFIW	9	Unmodified	_FVKCCVFIW_					0	0	0			REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7877410957501	2	572.787741	1143.56093	1.6076	0.00092079	5.9418	0.0034034	7.5494	0.0043242	572.7913818617391	24.96	0.072418	24.96	24.912	24.985	0	1194	70	0.902037	0.042292476	0.902037	365.65442	0	17.14392						134	4	2	NaN	NaN	NaN	0.55027	1	14581	14581		7.5404	2.0745	1	17738	+		6761	11581	3901	3987	5412	5412					-0.00510876915859626
FVKCCVFIW	9	Unmodified						0	0	0			REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.787741	1143.56093	1.6076	0.00092079	5.9418	0.0034034	7.5494	0.0043242	572.7913818617391	24.96	0.072418	24.96	24.912	24.985	0	1194	70	0.902037	0.042292476	0.902037	365.65442		17.14392	-0.090389	0.00083494	0.0071955	NaN	7.5404	134	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17738	+		6762	11581	3901	3987							-0.00510876915859626
FVKCCVFIW	9	Unmodified						0	0	0			REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.787741	1143.56093	1.3604	0.00077924	3.9289	0.0022504	5.2894	0.0030297	573.2898922580167	25.153	0.19297	25.141	25.069	25.262	-0.012011	1215	82	0.8891654	0.04967457	0.88764596	360.43674		20.136322	0.090389	-0.001471	-0.0071955	NaN	7.5404	153	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14058	+		6763	11581	3901	3987							-0.00510876915859626
FVKEHFDEL	9	Unmodified	_FVKEHFDEL_					0	0	0		ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2902137265002	2	582.290214	1162.56587	1.8197	0.0010596	-7.2491	-0.0042211	-5.4293	-0.0031614	582.2866968353981	20.165	0.09613	20.165	20.141	20.237	0	1203	67	0.8965218	0.040455878	0.8965218	363.34802	0	16.39621						129	5	2	NaN	NaN	NaN	0.2345	1	15231	15231		23.118	4.5595	1	17956			6764	470	3902	3988	5413	5413					-0.008905782478905166
FVKIKTDI	8	Unmodified	_FVKIKTDI_					0	0	0		tr|U7T3N9|U7T3N9_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00476PE=3SV=1	tr|U7T3N9|U7T3N9_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00476PE=3SV=1	tr|U7T3N9|U7T3N9_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00476PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.2973104771	2	482.29731	962.580068	1.8317	0.00088342	-3.1159	-0.0015028	-1.2842	-0.00061936	482.29653233363996	22.356	0.07234	22.356	22.332	22.405	0	1314	31	0.8283535	0.018462718	0.8283535	336.53683	0	7.5009155						61	4	2	NaN	NaN	NaN	0.69898	1	7413	7413		19.118	2.7017	1	5512.9			6765	13975	3903	3989	5414	5414					0.09728118971031563
FVKSMWSKR	9	Unmodified	_FVKSMWSKR_					0	0	0			REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8184184474501	2	584.818418	1167.62228	1.2159	0.0007111	6.4103	0.0037488	7.6262	0.0044599	584.8216847637578	34.033	0.21723	34.032	33.936	34.153	-0.0012474	1146	34	0.93142134	0.020187557	0.9299019	377.4731	0	8.181335						108	10	2	NaN	NaN	NaN	0.59509	1	14875	14875		5.6942	0.50528	1	7272.6	+		6766	8521	3904	3990	5415	5415					0.045177711077712956
FVKSMWSKR	9	Unmodified						0	0	0			REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.818418	1167.62228	1.1644	0.00068095	5.6106	0.0032812	6.775	0.0039621	584.8219821033128	33.89	0.16892	33.89	33.817	33.986	0	1149	34	0.92958635	0.020185351	0.92958635	376.72943		8.18045	-0.071157	-0.0003901	-0.0001578	NaN	5.6942	63	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5266.6	+		6767	8521	3904	3990							0.045177711077712956
FVKSMWSKR	9	Unmodified						0	0	0			REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.818418	1167.62228	1.2159	0.0007111	6.4103	0.0037488	7.6262	0.0044599	584.8216847637578	34.033	0.21723	34.032	33.936	34.153	-0.0012474	1146	34	0.93142134	0.020187557	0.9299019	377.4731		8.181335	0.071157	0.00054518	0.0001578	NaN	5.6942	108	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7272.6	+		6768	8521	3904	3990							0.045177711077712956
FVLIVCVHS	9	Unmodified	_FVLIVCVHS_					0	0	0			REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5597495286002	1	1016.55975	1015.55247	1.2117	0.0012318	5.7597	0.005855	6.9714	0.0070868	1016.5664173986324	32.079	0.16893	32.075	32.027	32.196	-0.0037613	144	67	1.533442	0.038968682	1.5319226	311.27246	0	7.910248						154	8	3	NaN	NaN	NaN	0.22308	1	9040	9040		23.85	2.898	1	11100	+		6769	13250	3905	3991	5416	5416					0.04531892439160856
FVLLVTGPCI	10	Unmodified	_FVLLVTGPCI_					0	0	0			REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	REV__nc|ENSG00000143603|Q9UGI6-3|KCNN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3068209184001	2	531.306821	1060.59909	0.98119	0.00052131	-8.2173	-0.0043659	-7.2361	-0.0038446	531.3029312407015	24.116	0.07242	24.103	24.055	24.127	-0.012749	1248	79	0.8689189	0.047899425	0.86739945	352.55762	0	19.434845						201	4	4	NaN	NaN	NaN	0.36718	1	10895	10895		24.961	0.56077	1	40595	+		6770	9873	3906	3992	5417	5417					0.0712133227045797
FVLTTEIAL	9	Unmodified	_FVLTTEIAL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5819247587	1	1006.58192	1005.57465	1.395	0.0014042	-0.17609	-0.00017724	1.2189	0.001227	1006.5829207200286	32.273	0.096565	32.273	32.249	32.345	0	132	61	1.5405227	0.03541863	1.5405227	312.75134	0	7.1905518						83	5	3	NaN	NaN	NaN	0.27442	1	8819	8819		20.555	4.1388	1	4963.1			6771	1007	3907	3993	5418	5418					0.0720839538855671
FVLYGIKAL	9	Unmodified	_FVLYGIKAL_					0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.3155032302501	2	512.315503	1022.61645	1.741	0.00089193	-3.1348	-0.001606	-1.3938	-0.00071408	512.313168691249	28.58	0.024117	28.572	28.572	28.596	-0.0083485	1263	31	0.85970795	0.018426836	0.8581885	348.98636	0	7.480133						35	2	2	NaN	NaN	NaN	0.62619	1	9285	9285		4.4131	0.84331	1	2911.9	+		6772	11016	3908	3994	5419	5419					0.10604995867754496
FVLYGIKAL	9	Unmodified						0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.315503	1022.61645	2.0784	0.0010648	-3.6583	-0.0018742	-1.5799	-0.00080942	512.314240209621	28.556	0.024134	28.556	28.556	28.581	0	1260	28	0.8615505	0.016583264	0.8615505	349.7343		6.7317505	-0.0075285	-0.00023987	0.001681	NaN	4.4131	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2834	+		6773	11016	3908	3994							0.10604995867754496
FVLYGIKAL	9	Unmodified						0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.315503	1022.61645	1.741	0.00089193	-3.1348	-0.001606	-1.3938	-0.00071408	512.313168691249	28.58	0.024117	28.572	28.572	28.596	-0.0083485	1263	31	0.85970795	0.018426836	0.8581885	348.98636		7.480133	0.0075285	0.00029653	-0.001681	NaN	4.4131	35	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911.9	+		6774	11016	3908	3994							0.10604995867754496
FVMDEDATL	9	Unmodified	_FVMDEDATL_					0	0	0		ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	ENSG00000204673|ENST00000344175|AKT1S1	ENSG00000204673|ENST00000344175|AKT1S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.460488994	1	1040.46049	1039.45321	1.9916	0.0020722	-1.0797	-0.0011234	0.9119	0.00094879	1040.4600016306163	25.781	0.16891	25.781	25.757	25.926	0	207	88	1.496219	0.051474214	1.496219	303.62302	0	10.445496						146	8	2	NaN	NaN	NaN	0.094712	1	10173	10173		36.586	20.002	1	16057			6775	5903	3909	3995	5420	5420					-0.06493595036272382
FVMDEDATL	9	Unmodified	_FVMDEDATL_					0	0	0		ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	ENSG00000204673|ENST00000344175|AKT1S1	ENSG00000204673|ENST00000344175|AKT1S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.460488994	1	1040.46049	1039.45321	2.0244	0.0021063	-0.27903	-0.00029032	1.7453	0.0018159	1040.4607660498746	25.805	0.14483	25.793	25.745	25.89	-0.0116	204	76	1.4979934	0.04436958	1.496474	303.9831	0	9.003784						179	7	3	NaN	NaN	NaN	0.062072	1	9965	9965		41.785	22.666	1	16208			6776	5903	3909	3995	5421	5421					-0.06493595036272382
FVMETFVHL	9	Unmodified	_FVMETFVHL_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7862526518002	2	561.786253	1121.55795	1.4982	0.00084168	-5.4339	-0.0030527	-3.9357	-0.002211	561.7864135792166	29.087	0.072386	29.087	29.063	29.136	0	1221	49	0.885486	0.029441535	0.885486	359.02914	0	11.937347						104	4	3	NaN	NaN	NaN	0.45297	1	13740	13740		11.548	0.37812	1	13135			6777	1559	3910	3996	5422	5422					0.0020357123098619923
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.763840188	2	566.76384	1131.51313	1.6867	0.00095594	-2.5451	-0.0014425	-0.8584	-0.00048651	566.7624380596261	14.501	0.21596	14.501	14.453	14.669	0	1233	61	0.87812483	0.03681785	0.87812483	356.00644	0	14.926575						311	10	5	NaN	NaN	NaN	0.061945	1	14126	14126		41.839	15.724	1	59031			6778	2601	3911	3997	5423	5423					-0.0473685958236274
FVNDDRHVM	9	Unmodified	_FVNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.763840188	2	566.76384	1131.51313	1.1128	0.00063071	-0.63726	-0.00036117	0.47558	0.00026954	566.7634420958551	14.524	0.1677	14.513	14.489	14.657	-0.011218	1233	61	0.87812483	0.036825776	0.8766054	356.00644	0	14.929779						258	8	4	NaN	NaN	NaN	0.14227	1	13674	13674		29.706	14.531	1	49212			6779	2601	3911	3997	5424	5424					-0.0473685958236274
FVNDDRHVM	9	Oxidation (M)	_FVNDDRHVM(Oxidation (M))_		FVNDDRHVM(1)		FVNDDRHVM(69)	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.76129749905	2	574.761297	1147.50804	1.3678	0.00078618	-0.7854	-0.00045142	0.58243	0.00033476	574.7610128665754	12.364	0.21583	12.364	12.316	12.532	0	1230	58	0.8799654	0.034978867	0.8799654	356.69278	0	14.178619						253	10	4	NaN	NaN	NaN	0.022185	1	14704	14704		69.233	40.337	1	41881			6780	2601	3911	3998	5425	5425		298			-0.059811634449943085
FVNDDRHVM	9	Oxidation (M)	_FVNDDRHVM(Oxidation (M))_		FVNDDRHVM(1)		FVNDDRHVM(61)	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.76129749905	2	574.761297	1147.50804	0.98731	0.00056747	-0.69477	-0.00039933	0.29255	0.00016814	574.7610106269715	12.366	0.19195	12.357	12.309	12.501	-0.0088415	1230	52	0.8799654	0.03129351	0.878446	356.69278	0	12.684753						250	9	4	NaN	NaN	NaN	0.028404	1	14218	14218		61.199	35.084	1	43475			6781	2601	3911	3998	5426	5426		298			-0.059811634449943085
FVNDMKTMF	9	Unmodified	_FVNDMKTMF_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.17703900603334	3	378.177039	1131.50929	1.3911	0.00052608	1.3776	0.00052099	2.7687	0.0010471	378.17792703098877	14.501	0.14396	14.501	14.477	14.621	0	1515	46	0.7042165	0.027891457	0.7042165	428.24707	0	16.961334						211	7	4	NaN	NaN	NaN	0.2345	1	14127	14127		16.226	0.91487	1	48569			6782	1175	3912	3999	5427	5427					-0.0512066540043179
FVNDMKTMF	9	Unmodified	_FVNDMKTMF_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.17703900603334	3	378.177039	1131.50929	1.3562	0.00051288	1.3384	0.00050616	2.6946	0.001019	378.1776657403567	14.548	0.1677	14.537	14.489	14.657	-0.011218	1515	43	0.7042165	0.02603066	0.70269704	428.24707	0	15.829712						233	8	3	NaN	NaN	NaN	0.14787	1	13673	13673		25.681	3.831	1	53427			6783	1175	3912	3999	5428	5428					-0.0512066540043179
FVNFSGCG	8	Unmodified	_FVNFSGCG_					0	0	0		tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.3501506836002	1	830.350151	829.342874	1.5119	0.0012554	3.8294	0.0031797	5.3412	0.0044351	830.3541146285148	24.237	0.096498	24.237	24.237	24.333	0	468	64	1.3411216	0.03761697	1.3411216	273.05084	0	7.6587524						87	5	2	NaN	NaN	NaN	0.81251	1	5127	5127		7.5404	1.45	1	12799			6784	13891	3913	4000	5429	5429					-0.07862350513960337
FVNFSGCG	8	Unmodified						0	0	0		tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	tr|U7SUZ2|U7SUZ2_FUSNUGlycogendebranchingenzymeGlgXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01446PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	830.350151	829.342874	1.3911	0.0011551	5.0692	0.0042092	6.4603	0.0053643	830.3546485736415	24.285	0.09655	24.272	24.224	24.32	-0.012749	462	73	1.3447032	0.04297018	1.3431838	273.78003		8.748657	0.017599	0.00050833	0.0010311	NaN	7.5404	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10470			6785	13891	3913	4000							-0.07862350513960337
FVNLIDIL	8	Unmodified	_FVNLIDIL_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5607953861	1	946.560795	945.553519	0.90066	0.00085253	3.5241	0.0033358	4.4248	0.0041883	946.5638765536814	33.335	0.096539	33.335	33.287	33.383	0	258	70	1.4660252	0.0408895	1.4660252	297.8825	0	8.30835						160	5	2	NaN	NaN	NaN	0.6053	1	6976	6976		24.961	1.1106	1	20503	+		6786	9961	3914	4001	5430	5430					0.07856430079709753
FVNNQHLSGHI	11	Unmodified	_FVNNQHLSGHI_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.5510327144667	3	422.551033	1264.63127	1.4599	0.00061689	-1.201	-0.0005075	0.25887	0.00010939	422.5510190524705	25.322	0.16884	25.31	25.262	25.431	-0.012011	1437	40	0.7524962	0.024104536	0.75097674	457.02753	0	14.639832						199	8	4	NaN	NaN	NaN	0.688	1	17301	17301		5.6972	0	1	22094	+		6787	11097	3915	4002	5431	5431					0.00953835997825081
FVNSDFAFDF	10	Unmodified	_FVNSDFAFDF_					0	0	0		nc|ENSG00000145626|Q6NUS8-2|UGT3A1;ENSG00000145626|ENST00000274278|UGT3A1	nc|ENSG00000145626|Q6NUS8-2|UGT3A1	nc|ENSG00000145626|Q6NUS8-2|UGT3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.7665714547	2	604.766571	1207.51859	1.7797	0.0010763	4.1244	0.0024943	5.9041	0.0035706	605.2717063922076	26.094	0.096571	26.094	26.022	26.119	0	1185	49	0.90755045	0.02940017	0.90755045	367.65714	0	11.910278						117	5	2	NaN	NaN	NaN	0.5626	1	16666	16666		16.858	1.0364	1	18361			6788	3521	3916	4003	5432	5432					-0.07686857518910983
FVPCKWVF	8	Unmodified	_FVPCKWVF_					0	0	0			REV__ENST00000339697.4_1_6:122779773-122792862:-|nuORF	REV__ENST00000339697.4_1_6:122779773-122792862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.26749879265	2	513.267499	1024.52044	2.3562	0.0012094	-7.2008	-0.0036959	-4.8446	-0.0024866	513.2639342189617	26.263	0.14481	26.263	26.215	26.36	0	1281	46	0.84864825	0.027662694	0.84864825	344.48834	0	11.229004						161	7	4	NaN	NaN	NaN	0.65075	1	9552	9552		22.126	0.29135	1	26240	+		6789	11777	3917	4004	5433	5433					0.00916524756007675
FVPEANIP	8	Unmodified	_FVPEANIP_					0	0	0			REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.4668950009001	1	886.466895	885.459619	1.2883	0.001142	-0.61403	-0.00054432	0.67426	0.00059771	886.4665620170172	29.231	0.19308	29.224	29.151	29.344	-0.0077209	399	106	1.382264	0.062588096	1.3807446	281.13654	0	12.729706						362	9	2	NaN	NaN	NaN	0.39717	1	5755	5755		36.586	7.6909	1	36586	+		6790	9025	3918	4005	5434	5434					0.01230710977426952
FVPEANIP	8	Unmodified						0	0	0			REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	886.466895	885.459619	1.6389	0.0014528	-1.0243	-0.000908	0.6146	0.00054482	886.4660746917758	29.232	0.12065	29.232	29.184	29.305	0	402	100	1.3804773	0.05899906	1.3804773	280.77316		11.999725	0.0042402	-0.00018628	-0.00013363	NaN	36.586	253	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18891	+		6791	9025	3918	4005							0.01230710977426952
FVPEANIP	8	Unmodified						0	0	0			REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	886.466895	885.459619	1.2883	0.001142	-0.61403	-0.00054432	0.67426	0.00059771	886.4665620170172	29.231	0.19308	29.224	29.151	29.344	-0.0077209	399	106	1.382264	0.062588096	1.3807446	281.13654		12.729706	-0.0042402	0.0001774	0.00013363	NaN	36.586	362	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36586	+		6792	9025	3918	4005							0.01230710977426952
FVPFSSSWW	9	Unmodified	_FVPFSSSWW_					0	0	0		ENST00000574733.5_1_16:4519403-4524387:-|nuORF;ENST00000573520.5_1_16:4521405-4524561:-|nuORF;ENST00000571291.5_1_16:4519639-4524561:-|nuORF;ENST00000283429.10_1_16:4519403-4524606:-|nuORF;ENST00000404295.7_1_16:4519400-4524561:-|nuORF	ENST00000574733.5_1_16:4519403-4524387:-|nuORF	ENST00000574733.5_1_16:4519403-4524387:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5305578902	1	1142.53056	1141.52328	2.0614	0.0023552	0.40717	0.00046521	2.4686	0.0028204	1143.5340768450167	37.217	0.19269	37.217	37.145	37.338	0	69	55	1.5776473	0.031785727	1.5776473	319.77185	0	6.442627						237	9	3	NaN	NaN	NaN	0.070055	1	14508	14508		55.947	17.029	1	23190			6793	7657	3919	4006	5435	5435					-0.04181928585467176
FVPFSSSWW	9	Unmodified	_FVPFSSSWW_					0	0	0		ENST00000574733.5_1_16:4519403-4524387:-|nuORF;ENST00000573520.5_1_16:4521405-4524561:-|nuORF;ENST00000571291.5_1_16:4519639-4524561:-|nuORF;ENST00000283429.10_1_16:4519403-4524606:-|nuORF;ENST00000404295.7_1_16:4519400-4524561:-|nuORF	ENST00000574733.5_1_16:4519403-4524387:-|nuORF	ENST00000574733.5_1_16:4519403-4524387:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1142.5305578902	1	1142.53056	1141.52328	1.4391	0.0016442	0.57672	0.00065892	2.0158	0.0023031	1142.5315882014206	37.215	0.12034	37.217	37.169	37.289	0.0022507	66	55	1.579413	0.03178227	1.5778936	320.12976	0	6.441925						195	6	3	NaN	NaN	NaN	0.070055	1	14032	14032		55.947	26.349	1	17405			6794	7657	3919	4006	5436	5436					-0.04181928585467176
FVPLHSFFL	9	Unmodified	_FVPLHSFFL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8053026847001	2	553.805303	1105.59605	0.73631	0.00040777	0.6819	0.00037764	1.4182	0.00078541	554.3070537082637	30.849	0.072395	30.849	30.801	30.873	0	1185	49	0.90755045	0.029403389	0.90755045	368.0399	0	11.923981						126	4	3	NaN	NaN	NaN	0.16939	1	13093	13093		31.561	18.098	1	34827			6795	5723	3920	4007	5437	5437					0.04747825207959977
FVPLHSFFL	9	Unmodified						0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.805303	1105.59605	1.0824	0.00059945	-0.031274	-1.732E-05	1.0511	0.00058213	553.804710710679	30.848	0.12069	30.842	30.794	30.915	-0.0057545	1188	55	0.90571284	0.033075213	0.9041934	367.29468		13.413025	-0.0034348	-0.00029595	-0.0016785	NaN	31.561	152	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28816			6796	5723	3920	4007							0.04747825207959977
FVPYVWTGTEF	11	Unmodified	_FVPYVWTGTEF_					0	0	0			REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3267961980501	2	673.326796	1344.63904	1.2945	0.00087164	-4.9729	-0.0033484	-3.6784	-0.0024767	673.3236525827964	22.958	0.096426	22.945	22.921	23.017	-0.01354	1107	34	0.9552588	0.020154953	0.9537394	386.53806	0	8.155518						111	5	3	NaN	NaN	NaN	0.688	1	18614	18614		8.2448	1.2605	1	10244	+		6797	9107	3921	4008	5438	5438					-0.019494495252729394
FVQMRSSEQ	9	Unmodified	_FVQMRSSEQ_					0	0	0			REV__ENST00000521259.1_1_8:87516185-87516770:+|nuORF	REV__ENST00000521259.1_1_8:87516185-87516770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2636730125001	2	556.263673	1110.51279	0.81571	0.00045375	-3.1847	-0.0017715	-2.3689	-0.0013178	556.2616099111237	33.599	0.072369	33.597	33.597	33.67	-0.0018501	1248	64	0.8689189	0.038694263	0.86739945	352.35437	0	15.690887						92	4	3	NaN	NaN	NaN	0.59509	1	12911	12911		5.6942	0	1	6597.7	+		6798	12598	3922	4009	5439	5439					-0.038042793021986654
FVQNNSRHCFE	11	Unmodified	_FVQNNSRHCFE_					0	0	0			REV__ENST00000361951.4_1_1:173826846-173826999:+|nuORF	REV__ENST00000361951.4_1_1:173826846-173826999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.8752990383	3	460.875299	1379.60407	0.84394	0.00038895	-0.06221	-2.8671E-05	0.78173	0.00036028	461.2091050336527	38.706	0.28834	38.71	38.566	38.854	0.0040245	1422	55	0.7617651	0.033355594	0.7602457	462.2409	0	20.240265						243	13	3	NaN	NaN	NaN	0.63477	1	18951	18951		5.9336	0	1	20958	+		6799	11851	3923	4010	5440	5440					-0.07055015604896653
FVSEWEYCCS	10	Unmodified	_FVSEWEYCCS_					0	0	0			REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.7360994557501	2	626.736099	1251.45765	1.3784	0.00086392	-9.3238	-0.0058436	-7.9454	-0.0049797	626.7304921981113	17.042	0.16806	17.029	16.981	17.149	-0.013296	1197	40	0.9001988	0.023899257	0.8986794	364.53427	0	9.6779785						144	8	2	NaN	NaN	NaN	0.53991	1	17048	17048		17.799	2.6236	1	25852	+		6800	11899	3924	4011	5441	5441					-0.15802453884975876
FVSEWEYCCS	10	Unmodified						0	0	0			REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.736099	1251.45765	1.7854	0.001119	-10.697	-0.006704	-8.9113	-0.0055851	626.730252129297	17.045	0.14409	17.045	17.021	17.165	0	1197	43	0.9001988	0.025736272	0.9001988	364.53427		10.421875	0.0083466	-0.00093713	0.00075972	NaN	17.799	202	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24800	+		6801	11899	3924	4011							-0.15802453884975876
FVSEWEYCCS	10	Unmodified						0	0	0			REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	REV__ENST00000371429.3_1_1:54266382-54266484:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.736099	1251.45765	1.3784	0.00086392	-9.3238	-0.0058436	-7.9454	-0.0049797	626.7304921981113	17.042	0.16806	17.029	16.981	17.149	-0.013296	1197	40	0.9001988	0.023899257	0.8986794	364.53427		9.6779785	-0.0083466	0.00078378	-0.00075972	NaN	17.799	144	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25852	+		6802	11899	3924	4011							-0.15802453884975876
FVSFFDLQDLS	11	Unmodified	_FVSFFDLQDLS_					0	0	0		ENST00000433048.1_1_7:109599683-109600109:-|nuORF	ENST00000433048.1_1_7:109599683-109600109:-|nuORF	ENST00000433048.1_1_7:109599683-109600109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3217108201501	2	659.321711	1316.62887	1.1045	0.0007282	-0.2901	-0.00019127	0.81437	0.00053693	659.3222166954861	26.94	0.12062	26.94	26.867	26.988	0	1116	70	0.94976085	0.042146683	0.94976085	384.39648	0	17.058014						166	6	3	NaN	NaN	NaN	0.62612	1	19054	19054		12.307	0.56784	1	15318			6803	6979	3925	4012	5442	5442					-0.016780572505240343
FVSFTSRL	8	Unmodified	_FVSFTSRL_					0	0	0		nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.76363483525	2	478.763635	955.512717	-0.28412	-0.00013602	-4.4391	-0.0021253	-4.7232	-0.0022613	478.76162851518956	56.563	0.19183	56.562	56.514	56.706	-0.00056458	1347	49	0.8080346	0.029575586	0.8065152	328.316	0	12.016998						117	9	2	NaN	NaN	NaN	0.82332	1	7084	7084		6.0903	1.1806	1	9907.2			6804	700	3926	4013	5443	5443					0.03318088760090632
FVSGNGGS	8	Unmodified	_FVSGNGGS_					0	0	0			REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3260444231003	1	724.326044	723.318768	1.847	0.0013378	6.5178	0.004721	8.3649	0.0060589	724.3298494524752	25.998	0.072416	25.998	25.974	26.046	0	663	49	1.2243022	0.028849363	1.2243022	249.86119	0	5.8877106						69	4	2	NaN	NaN	NaN	0.84455	1	3658	3658		2.7852	0	1	5279.2	+		6805	8432	3927	4014	5444	5444					-0.053958676759748414
FVSSPGPG	8	Unmodified	_FVSSPGPG_					0	0	0		ENST00000541549.2_1_10:120840228-120840318:-|nuORF	ENST00000541549.2_1_10:120840228-120840318:-|nuORF	ENST00000541549.2_1_10:120840228-120840318:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	747.3671809563002	1	747.367181	746.359904	2.1711	0.0016226	5.8337	0.0043599	8.0048	0.0059825	747.3715777490959	29.86	0.38619	29.86	29.811	30.198	0	597	196	1.2639319	0.1170944	1.2639319	257.8009	0	23.883438						1053	17	3	NaN	NaN	NaN	0.69631	1	3993	3993		19.285	0	1	448240			6806	7498	3928	4015	5445	5445					-0.023421066365017396
FVSSPGPG	8	Unmodified	_FVSSPGPG_					0	0	0		ENST00000541549.2_1_10:120840228-120840318:-|nuORF	ENST00000541549.2_1_10:120840228-120840318:-|nuORF	ENST00000541549.2_1_10:120840228-120840318:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3671809563002	1	747.367181	746.359904	1.8665	0.0013949	6.0515	0.0045227	7.918	0.0059177	747.3718605913891	29.859	0.38608	29.852	29.803	30.19	-0.0070648	597	202	1.2639319	0.12072313	1.2624124	257.8009	0	24.62358						1234	17	5	NaN	NaN	NaN	0.62311	1	3916	3916		23.85	8.8376	1	495540			6807	7498	3928	4015	5446	5446					-0.023421066365017396
FVTEVLDVI	9	Unmodified	_FVTEVLDVI_					0	0	0		nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5768393807998	1	1034.57684	1033.56956	0.90133	0.00093249	-1.0739	-0.001111	-0.17255	-0.00017852	1034.5761441277505	33.359	0.072407	33.359	33.335	33.407	0	174	61	1.5157272	0.035444856	1.5157272	307.60468	0	7.1932373						118	4	2	NaN	NaN	NaN	0.030391	1	9941	9941		58.599	8.7663	1	13722			6808	1303	3929	4016	5447	5447					0.05412091525931828
FVTEVLDVI	9	Unmodified	_FVTEVLDVI_					0	0	0		nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5768393807998	1	1034.57684	1033.56956	0.73683	0.00076231	0.18532	0.00019173	0.92215	0.00095404	1034.5773705772035	33.358	0.096504	33.355	33.331	33.428	-0.0024796	171	61	1.5174994	0.03544116	1.51598	307.96436	0	7.1924744						113	5	2	NaN	NaN	NaN	0.03623	1	9734	9734		52.758	18.319	1	12303			6809	1303	3929	4016	5448	5448					0.05412091525931828
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	1.4221	0.0014115	-1.2923	-0.0012827	0.12977	0.00012881	992.5651233389724	31.766	0.048286	31.766	31.742	31.79	0	675	61	1.2170867	0.03608477	1.2170867	247.13577	0	7.3272247						73	3	2	NaN	NaN	NaN	0.20577	1	8287	8287		24.961	1.6266	1	7766.7			6810	3016	3930	4017	5449	5449					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	1.7698	0.0017566	-1.6293	-0.0016172	0.14047	0.00013943	992.5645540143803	32.611	0.096554	32.611	32.611	32.707	0	213	91	1.4926696	0.05324638	1.4926696	303.0943	0	10.811951						197	5	2	NaN	NaN	NaN	0.14301	1	8288	8288		29.598	4.6373	1	30116			6811	3016	3930	4017	5450	5450					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	2.0892	0.0020737	-0.048753	-4.8391E-05	2.0405	0.0020253	992.5662836322464	31.766	0.3379	31.766	31.718	32.056	0	210	214	1.4944444	0.12622428	1.4944444	303.45468	0	25.630493						1346	15	5	NaN	NaN	NaN	0.02781	1	8291	8291		61.977	12.144	1	934260			6812	3016	3930	4017	5451	5451					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945001	1	992.566275	991.558998	1.0159	0.0010084	-2.572	-0.0025529	-1.556	-0.0015445	992.5631426785671	32.151	0.096485	32.148	32.123	32.22	-0.0037613	210	76	1.4944444	0.044374347	1.4929249	303.45468	0	9.010437						216	5	3	NaN	NaN	NaN	0.078597	1	8118	8118		38.918	13.166	1	28313			6813	3016	3930	4017	5452	5452					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945001	1	992.566275	991.558998	1.0047	0.00099728	-2.0478	-0.0020326	-1.0431	-0.0010353	992.5642289375803	33.72	0.12064	33.718	33.645	33.766	-0.0018463	216	82	1.4908947	0.04789877	1.4893752	302.7339	0	9.726105						150	6	2	NaN	NaN	NaN	0.049695	1	8119	8119		47.04	20.309	1	10697			6814	3016	3930	4017	5453	5453					0.062881088715244
FVTSIDVVL	9	Unmodified	_FVTSIDVVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945001	1	992.566275	991.558998	1.0207	0.0010132	0.48215	0.00047856	1.5029	0.0014917	992.5670283112518	31.765	0.048319	31.761	31.737	31.785	-0.0044155	672	61	1.2188909	0.036088824	1.2173715	247.5021	0	7.328003						83	3	2	NaN	NaN	NaN	0.03623	1	8121	8121		52.758	21.197	1	7887.6			6815	3016	3930	4017	5454	5454					0.062881088715244
FVTSLSDC	8	Unmodified	_FVTSLSDC_					0	0	0			REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.3865957694	1	871.386596	870.379319	1.8927	0.0016492	-4.2109	-0.0036693	-2.3183	-0.0020201	871.3823088952479	21.898	0.19279	21.898	21.85	22.043	0	444	94	1.3554435	0.055464625	1.3554435	275.75464	0	11.2838745						417	9	3	NaN	NaN	NaN	0.50567	1	5665	5665		30.791	5.0393	1	67246	+		6816	8196	3931	4018	5455	5455					-0.06105518407935051
FVTSLSDC	8	Unmodified						0	0	0			REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	871.386596	870.379319	1.8927	0.0016492	-4.2109	-0.0036693	-2.3183	-0.0020201	871.3823088952479	21.898	0.19279	21.898	21.85	22.043	0	444	94	1.3554435	0.055464625	1.3554435	275.75464		11.2838745	0.0070647	-0.00053155	-0.00013497	NaN	30.791	417	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67246	+		6817	8196	3931	4018							-0.06105518407935051
FVTSLSDC	8	Unmodified						0	0	0			REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	REV__ENST00000550385.1_1_12:102090725-102108674:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	871.386596	870.379319	1.1367	0.00099051	-3.1174	-0.0027165	-1.9807	-0.001726	871.3836109124587	21.898	0.21675	21.884	21.836	22.053	-0.013895	441	94	1.3572328	0.055464625	1.3557134	276.11865		11.2838745	-0.0070647	0.0004213	0.00013497	NaN	30.791	425	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67632	+		6818	8196	3931	4018							-0.06105518407935051
FVTSVGDAM	9	Unmodified	_FVTSVGDAM_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000497787.1_1_1:151379381-151379546:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4287949351001	1	926.428795	925.421518	2.089	0.0019353	-0.37715	-0.0003494	1.7118	0.0015859	926.4286150667417	22.79	0.096432	22.79	22.766	22.863	0	369	55	1.4001206	0.03212142	1.4001206	284.58017	0	6.5288086						107	5	2	NaN	NaN	NaN	0.028349	1	6498	6498		61.271	30.48	1	14497			6819	3424	3932	4019	5456	5456					-0.04417542999544821
FVTSVGDAM	9	Unmodified	_FVTSVGDAM_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000497787.1_1_1:151379381-151379546:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.4287949351001	1	926.428795	925.421518	1.0028	0.00092898	0.2941	0.00027246	1.2969	0.0012014	926.4292060136792	22.79	0.14453	22.776	22.752	22.896	-0.01354	366	58	1.4019053	0.033907652	1.4003859	284.9429	0	6.891876						169	7	3	NaN	NaN	NaN	0.012648	1	6370	6370		84.879	57.09	1	16246			6820	3424	3932	4019	5457	5457					-0.04417542999544821
FVTSVGDAM	9	Oxidation (M)	_FVTSVGDAM(Oxidation (M))_		FVTSVGDAM(1)		FVTSVGDAM(120)	0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000497787.1_1_1:151379381-151379546:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4237095572001	1	942.42371	941.416433	1.814	0.0017096	0.7103	0.0006694	2.5243	0.002379	942.4248385934769	18.94	0.12	18.94	18.916	19.036	0	378	73	1.3947657	0.04284215	1.3947657	283.42114	0	8.705688						203	6	3	NaN	NaN	NaN	8.7755E-05	1	6837	6837		123.66	76.176	1	19967			6821	3424	3932	4020	5458	5458		384			-0.05661846862153652
FVTSVGDAM	9	Oxidation (M)	_FVTSVGDAM(Oxidation (M))_		FVTSVGDAM(1)		FVTSVGDAM(110)	0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000497787.1_1_1:151379381-151379546:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4237095572001	1	942.42371	941.416433	1.863	0.0017558	0.72024	0.00067878	2.5833	0.0024345	942.4245500266027	18.962	0.1441	18.948	18.9	19.044	-0.014059	375	61	1.3965509	0.03570175	1.3950315	283.78387	0	7.2547607						139	7	2	NaN	NaN	NaN	0.0023856	1	6700	6700		109.86	72.555	1	17651			6822	3424	3932	4020	5459	5459		384			-0.05661846862153652
FVTTIVGYI	9	Unmodified	_FVTTIVGYI_					0	0	0		tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	tr|U7SLK8|U7SLK8_FUSNUPolysaccharidebiosynthesisproteinC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01961PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5713600724001	1	1012.57136	1011.56408	1.4629	0.0014812	-0.067408	-6.8256E-05	1.3954	0.001413	1012.5711391432641	31.789	0.24136	31.785	31.737	31.978	-0.0044174	126	178	1.544062	0.10455704	1.5425426	313.44476	0	21.225098						969	11	5	NaN	NaN	NaN	0.02781	1	8885	8885		61.977	9.3526	1	409690			6823	13764	3933	4021	5460	5460					0.058764127341419226
FVTVSSIVL	9	Unmodified	_FVTVSSIVL_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5713600724001	1	964.57136	963.564084	1.1416	0.0011011	0.31571	0.00030452	1.4573	0.0014056	964.5721363193694	34.131	0.072334	34.131	34.107	34.179	0	225	43	1.4855686	0.02485621	1.4855686	301.77252	0	5.0491943						68	4	2	NaN	NaN	NaN	0.36492	1	7451	7451		15.175	3.6269	1	6037	+		6824	10565	3934	4022	5461	5461					0.08084412734137914
FVTWFIFQCIN	11	Unmodified	_FVTWFIFQCIN_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3522910545502	2	709.352291	1416.69003	1.2896	0.00091478	3.732	0.0026473	5.0216	0.0035621	709.3557943417754	20.068	0.072166	20.054	20.03	20.102	-0.014141	1062	61	0.9827221	0.036592066	0.98120266	397.44498	0	14.799042						128	4	3	NaN	NaN	NaN	0.69801	1	19239	19239		7.5876	1.8934	1	10782	+		6825	10846	3935	4023	5462	5462					-0.0016482375206123834
FVTWFIFQCIN	11	Unmodified						0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	709.352291	1416.69003	1.2831	0.00091018	3.4954	0.0024795	4.7785	0.0033897	709.3551342666058	20.069	0.072081	20.069	20.021	20.093	0	1056	64	0.9863805	0.038423777	0.9863805	398.92456		15.539825	0.0073229	-0.00014734	0.0025889	NaN	7.5876	142	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13203	+		6826	10846	3935	4023							-0.0016482375206123834
FVTWFIFQCIN	11	Unmodified						0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	709.352291	1416.69003	1.2896	0.00091478	3.732	0.0026473	5.0216	0.0035621	709.3557943417754	20.068	0.072166	20.054	20.03	20.102	-0.014141	1062	61	0.9827221	0.036592066	0.98120266	397.44498		14.799042	-0.0073229	0.00018834	-0.0025889	NaN	7.5876	128	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10782	+		6827	10846	3935	4023							-0.0016482375206123834
FVTWIEGVM	9	Unmodified	_FVTWIEGVM_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5386797355002	1	1081.53868	1080.5314	0.74863	0.00080967	1.1506	0.0012445	1.8993	0.0020541	1081.540983304091	33.431	0.24119	33.431	33.359	33.6	0	102	100	1.5582114	0.05835712	1.5582114	316.04547	0	11.836334						367	11	2	NaN	NaN	NaN	0.0072287	1	12001	12001		98.041	48.208	1	62181			6828	2314	3936	4024	5463	5463					-0.005641176603376152
FVTWIEGVM	9	Unmodified	_FVTWIEGVM_					0	0	0		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5386797355002	1	1081.53868	1080.5314	1.0084	0.0010906	0.70679	0.00076442	1.7152	0.001855	1081.5397958839756	33.43	0.24135	33.428	33.38	33.621	-0.0018501	102	97	1.5582114	0.05657971	1.556692	316.04547	0	11.47583						327	11	2	NaN	NaN	NaN	0.01047	1	11687	11687		91.429	49.644	1	53456			6829	2314	3936	4024	5464	5464					-0.005641176603376152
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(110)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5335943576001	1	1097.53359	1096.52632	1.8497	0.0020301	-4.2669	-0.004683	-2.4172	-0.0026529	1097.5267830166733	29.401	0.2896	29.401	29.329	29.618	0	120	142	1.5476005	0.08315003	1.5476005	313.83557	0	16.861877						714	13	4	NaN	NaN	NaN	0.0023856	1	12682	12682		109.86	72.555	1	137500			6830	2314	3936	4025	5465	5465		266			-0.018084215229691836
FVTWIEGVM	9	Oxidation (M)	_FVTWIEGVM(Oxidation (M))_		FVTWIEGVM(1)		FVTWIEGVM(120)	0	0	1		ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.5335943576001	1	1097.53359	1096.52632	1.737	0.0019064	-4.4412	-0.0048744	-2.7042	-0.002968	1097.5266544430744	29.4	0.36192	29.393	29.248	29.61	-0.0077209	117	133	1.5493695	0.077830195	1.54785	314.19427	0	15.783081						651	16	4	NaN	NaN	NaN	0.00010594	1	12350	12350		122.55	72.717	1	123660			6831	2314	3936	4025	5466	5466		266			-0.018084215229691836
FVVCSVLAL	9	Unmodified	_FVVCSVLAL_					0	0	0			REV__OR14I1|p.E189V|1|0.81|ENSG00000189181|chr1:248681739-248681739|T/A|missense_variant	REV__OR14I1|p.E189V|1|0.81|ENSG00000189181|chr1:248681739-248681739|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.5379514540001	1	950.537951	949.530675	1.214	0.0011539	0.77521	0.00073686	1.9892	0.0018908	950.5389677489352	35.747	0.16887	35.747	35.675	35.844	0	255	64	1.4678029	0.037321925	1.4678029	298.22577	0	7.583008						200	8	2	NaN	NaN	NaN	0.12945	1	7084	7084		31.561	0	1	14655	+		6832	13276	3937	4026	5467	5467					0.05389087690582528
FVVCSVLAL	9	Unmodified						0	0	0			REV__OR14I1|p.E189V|1|0.81|ENSG00000189181|chr1:248681739-248681739|T/A|missense_variant	REV__OR14I1|p.E189V|1|0.81|ENSG00000189181|chr1:248681739-248681739|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	950.537951	949.530675	1.214	0.0011539	0.77521	0.00073686	1.9892	0.0018908	950.5389677489352	35.747	0.16887	35.747	35.675	35.844	0	255	64	1.4678029	0.037321925	1.4678029	298.22577		7.583008	0.00048447	0.00054661	0.00075972	NaN	31.561	200	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14655	+		6833	13276	3937	4026							0.05389087690582528
FVVEDHIL	8	Unmodified	_FVVEDHIL_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6;ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.26346765975	2	486.263468	970.512382	1.6127	0.00078421	-1.5634	-0.00076022	0.049325	2.3985E-05	486.2624559139721	24.044	0.072334	24.044	24.019	24.092	0	1263	49	0.85970795	0.029489279	0.85970795	349.23505	0	11.979309						77	4	2	NaN	NaN	NaN	0.62311	1	7620	7620		23.85	4.5657	1	8996.6			6834	3461;3148	3938	4027	5468	5468					0.025946690402406603
FVVEDHIL	8	Unmodified						0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6;ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.263468	970.512382	1.713	0.00083296	-1.3649	-0.00066371	0.34806	0.00016925	486.26285016242787	24.067	0.07239	24.055	24.031	24.103	-0.012749	1263	37	0.85970795	0.02211219	0.8581885	349.23505		8.982544	0.0055705	0.00010304	-0.00075972	NaN	23.85	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8623.1			6835	3461;3148	3938	4027							0.025946690402406603
FVVEHDFIM	9	Unmodified	_FVVEHDFIM_					0	0	0		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7758849307501	2	568.775885	1135.53722	2.4638	0.0014013	1.8612	0.0010586	4.325	0.00246	568.7770284130378	26.143	0.16894	26.143	26.07	26.239	0	1203	76	0.8965218	0.045970082	0.8965218	363.44937	0	18.636261						471	8	5	NaN	NaN	NaN	0.036546	1	14295	14295		52.624	32.069	1	143350			6836	4300	3939	4028	5469	5469					-0.02513019148705098
FVVEHDFIM	9	Unmodified	_FVVEHDFIM_					0	0	0		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7758849307501	2	568.775885	1135.53722	1.9312	0.0010984	0.83245	0.00047348	2.7636	0.0015719	568.776366663021	26.143	0.24128	26.131	26.083	26.324	-0.011137	1203	94	0.8965218	0.057002902	0.89500237	363.44937	0	23.108948						466	11	5	NaN	NaN	NaN	0.0047854	1	13827	13827		103.03	69.328	1	136880			6837	4300	3939	4028	5470	5470					-0.02513019148705098
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(81)	0	0	1		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7733422418	2	576.773342	1151.53213	2.4085	0.0013892	-1.3365	-0.00077088	1.072	0.00061829	576.7729880986433	23.079	0.14455	23.079	23.031	23.176	0	1209	97	0.892844	0.05883217	0.892844	361.89807	0	23.846558						524	7	6	NaN	NaN	NaN	0.014046	1	14853	14853		80.639	58.512	1	188700			6838	4300	3939	4029	5471	5471		462			-0.03757323011313929
FVVEHDFIM	9	Oxidation (M)	_FVVEHDFIM(Oxidation (M))_		FVVEHDFIM(1)		FVVEHDFIM(110)	0	0	1		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.T514A|1|0.29|ENSG00000164163|chr4:145123500-145123500|A/G|missense_variant;ENST00000510321.1_1_4:146044588-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7733422418	2	576.773342	1151.53213	1.8798	0.0010842	-1.4616	-0.00084301	0.41824	0.00024123	576.7728879746281	23.127	0.16868	23.114	23.017	23.186	-0.013296	1209	97	0.892844	0.05883217	0.8913246	361.89807	0	23.846558						589	8	6	NaN	NaN	NaN	0.0023856	1	14347	14347		109.86	76.159	1	198580			6839	4300	3939	4029	5472	5472		462			-0.03757323011313929
FVVEKVLDR	9	Unmodified	_FVVEKVLDR_					0	0	0		ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.82422371935	2	552.824224	1103.63389	1.7919	0.00099061	-2.8963	-0.0016011	-1.1044	-0.00061051	553.3242322255356	19.442	0.048063	19.428	19.404	19.452	-0.014141	1194	52	0.902037	0.031259656	0.9005176	365.81204	0	12.677032						65	3	2	NaN	NaN	NaN	0.56377	1	12656	12656		6.9844	0	1	5504.7			6840	2328	3940	4030	5473	5473					0.08622291402753035
FVVEKVLDR	9	Unmodified						0	0	0		ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.824224	1103.63389	1.3797	0.00076274	-0.82114	-0.00045394	0.55858	0.0003088	552.8233542161557	19.372	0.071966	19.372	19.348	19.42	0	1194	34	0.902037	0.020218074	0.902037	365.812		8.199249	-0.028039	0.00074329	0.00075972	NaN	6.9844	66	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5164.1			6841	2328	3940	4030							0.08622291402753035
FVVHITDVL	9	Unmodified	_FVVHITDVL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.8002173068	2	521.800217	1041.58588	1.6273	0.00084912	-0.37822	-0.00019736	1.2491	0.00065177	521.7996945574372	28.026	0.12063	28.026	27.977	28.098	0	1248	40	0.8689189	0.023943245	0.8689189	352.64005	0	9.717072						128	6	3	NaN	NaN	NaN	0.39244	1	10297	10297		14.042	0	1	13712			6842	4351	3941	4031	5474	5474					0.0667521748271156
FVVHITDVL	9	Unmodified	_FVVHITDVL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.8002173068	2	521.800217	1041.58588	1.1089	0.00057861	0.0050397	2.6297E-06	1.1139	0.00058124	521.8000752191564	28.049	0.12065	28.04	27.992	28.112	-0.0089779	1248	40	0.8689189	0.023940682	0.86739945	352.64005	0	9.716003						147	6	4	NaN	NaN	NaN	0.17818	1	10089	10089		26.732	14.144	1	15954			6843	4351	3941	4031	5475	5475					0.0667521748271156
FVVLCRDLS	9	Unmodified	_FVVLCRDLS_					0	0	0			REV__ENSG00000171860|ENST00000307637|C3AR1	REV__ENSG00000171860|ENST00000307637|C3AR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5604778101	1	1051.56048	1050.5532	1.3016	0.0013687	-10.069	-0.010588	-8.7672	-0.0092192	1051.5497363930428	34.178	0.072441	34.177	34.153	34.225	-0.0012474	141	61	1.5352125	0.035422325	1.5336931	311.49277	0	7.1871643						134	4	3	NaN	NaN	NaN	0.089764	1	10430	10430		37.302	0.71589	1	15627	+		6844	10637	3942	4032	5476	5476					0.02994687088221326
FVYGEPVTR	9	Unmodified	_FVYGEPVTR_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2796490402001	2	534.279649	1066.54475	2.3162	0.0012375	-2.1084	-0.0011265	0.20782	0.00011103	534.2785058924159	17.885	0.14392	17.885	17.861	18.005	0	1263	70	0.85970795	0.04237026	0.85970795	348.79538	0	17.190216						226	7	4	NaN	NaN	NaN	0.25548	1	11407	11407		21.771	9.7224	1	18640			6845	792	3943	4033	5477	5477					0.014134564432424668
FVYGEPVTR	9	Unmodified	_FVYGEPVTR_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2796490402001	2	534.279649	1066.54475	1.5084	0.0008059	-2.4652	-0.0013171	-0.95682	-0.00051121	534.2789652535881	17.906	0.11996	17.892	17.868	17.988	-0.013786	1263	67	0.85970795	0.040530264	0.8581885	348.79538	0	16.443695						222	6	3	NaN	NaN	NaN	0.2345	1	11138	11138		23.118	3.8329	1	20541			6846	792	3943	4033	5478	5478					0.014134564432424668
FVYTGDTMK	9	Unmodified	_FVYTGDTMK_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4972088513	1	1061.49721	1060.48993	1.3241	0.0014055	-0.043718	-4.6407E-05	1.2804	0.0013591	1061.4981421746215	34.516	0.12061	34.515	34.467	34.587	-0.0006485	177	70	1.5139546	0.04078102	1.5124352	307.14224	0	8.2734375						198	6	3	NaN	NaN	NaN	0.35794	1	10863	10863		15.463	1.9996	1	14529	+		6847	8868	3944	4034	5479	5479					-0.03789298419678744
FVYTGDTMK	9	Unmodified						0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1061.49721	1060.48993	1.3241	0.0014055	-0.043718	-4.6407E-05	1.2804	0.0013591	1061.4981421746215	34.516	0.12061	34.515	34.467	34.587	-0.0006485	177	70	1.5139546	0.04078102	1.5124352	307.14224		8.2734375	0.011101	7.0516E-05	-0.00075972	NaN	15.463	198	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14529	+		6848	8868	3944	4034							-0.03789298419678744
FWDPSVNLF	9	Unmodified	_FWDPSVNLF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.77419952155	2	562.7742	1123.53385	0.9288	0.0005227	-0.27713	-0.00015596	0.65167	0.00036674	562.7740685784852	33.985	0.12068	33.984	33.936	34.056	-0.0012474	1233	55	0.87812483	0.033132493	0.8766054	356.03687	0	13.433594						180	6	3	NaN	NaN	NaN	0.41766	1	13396	13396		13.003	2.3979	1	14539			6849	306	3945	4035	5480	5480					-0.022979459310590755
FWDPSVNLF	9	Unmodified	_FWDPSVNLF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1124.5411225765	1	1124.54112	1123.53385	0.96384	0.0010839	1.1967	0.0013457	2.1605	0.0024296	1124.5411208638297	33.985	0.096539	33.984	33.96	34.056	-0.0012474	66	67	1.579413	0.03885734	1.5778936	320.19104	0	7.877472						181	5	3	NaN	NaN	NaN	0.46215	1	13398	13398		11.17	2.2084	1	11603			6850	306	3945	4035	5481	5481					-0.022979459310590755
FWDPSVNLF	9	Unmodified						0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1124.54112	1123.53385	1.4204	0.0015973	-1.4413	-0.0016208	-0.020877	-2.3477E-05	1124.5411733106293	34.01	0.096512	34.01	33.962	34.059	0	69	70	1.5776473	0.040630102	1.5776473	319.83307		8.236847	0.013309	-0.0015264	-0.00012317	NaN	11.17	144	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11881			6851	306	3945	4035							-0.022979459310590755
FWFVLDHD	8	Unmodified	_FWFVLDHD_					0	0	0			REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.7532671142001	2	539.753267	1077.49198	2.1898	0.001182	-0.99691	-0.00053809	1.1929	0.00064387	539.7527023285153	13.541	0.072059	13.541	13.517	13.589	0	1260	28	0.8615505	0.016585052	0.8615505	349.49765	0	6.7279053						55	4	2	NaN	NaN	NaN	0.84651	1	11853	11853		1.6704	0	1	4489.1	+		6852	10949	3946	4036	5482	5482					-0.04366501619574592
FWHRREMWRQE	11	Unmodified	_FWHRREMWRQE_					0	0	0		ENST00000405315.8_2_19:49403351-49403540:+|nuORF	ENST00000405315.8_2_19:49403351-49403540:+|nuORF	ENST00000405315.8_2_19:49403351-49403540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.8993253497	2	830.899325	1659.7841	1.5779	0.0013111	-4.7231	-0.0039244	-3.1452	-0.0026133	830.8958084879889	30.56	0.14484	30.56	30.511	30.656	0	894	31	1.0848607	0.018186212	1.0848607	438.13138	0	7.344635						64	7	2	NaN	NaN	NaN	0.75376	1	20815	20815		3.9281	1.8255	1	4349.5			6853	6844	3947	4037	5483	5483					-0.0194029187725846
FWILNSIEI	9	Unmodified	_FWILNSIEI_					0	0	0		tr|U7ST87|U7ST87_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01262PE=4SV=1	tr|U7ST87|U7ST87_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01262PE=4SV=1	tr|U7ST87|U7ST87_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01262PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.81332468205	2	567.813325	1133.6121	2.0114	0.0011421	-11.119	-0.0063136	-9.1077	-0.0051715	567.8071123516555	18.386	0.31201	18.372	18.204	18.516	-0.01395	1200	61	0.89836043	0.036778092	0.896841	364.2022	0	14.910095						444	14	4	NaN	NaN	NaN	0.5168	1	13773	13773		3.5698	0	1	98751			6854	13846	3948	4038	5484	5484					0.050634866541713563
FWKIFKMWN	9	Unmodified	_FWKIFKMWN_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3389867140502	2	650.338987	1298.66342	1.421	0.00092414	-1.6484	-0.001072	-0.22743	-0.00014791	650.3374361597602	22.38	0.096174	22.366	22.318	22.414	-0.013733	1107	49	0.9552588	0.029317856	0.9537394	386.67725	0	11.867523						81	5	2	NaN	NaN	NaN	0.67818	1	17923	17923		1.072	0.14616	1	5175.4			6855	4128	3949	4039	5485	5485					0.026035321472591022
FWMSFTIS	8	Unmodified	_FWMSFTIS_					0	0	0		ENSG00000172967|ENST00000684488|XKR3;XKR3|p.W102Gfs*6|1|0.28|ENSG00000172967|chr22:16807770-16807770|A/-|frameshift_variant	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.4702658193002	1	1018.47027	1017.46299	2.498	0.0025441	0.096999	9.879E-05	2.595	0.0026429	1018.4699885300975	29.86	0.12066	29.86	29.811	29.932	0	237	64	1.4784646	0.037298203	1.4784646	300.10507	0	7.570923						135	6	2	NaN	NaN	NaN	0.80692	1	9258	9258		8.2903	0.74991	1	15553			6856	4864	3950	4040	5486	5486					-0.04504362240209048
FWPGEVDLD	9	Unmodified	_FWPGEVDLD_					0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2480145608	2	539.248015	1076.48148	2.2084	0.0011909	-7.8135	-0.0042134	-5.6051	-0.0030225	539.7450677219205	18.772	0.21598	18.772	18.676	18.892	0	1290	97	0.84311575	0.058991432	0.84311575	342.02347	0	23.930817						347	10	3	NaN	NaN	NaN	0.47587	1	11815	11815		10.605	0.85897	1	31464	+		6857	11393	3951	4041	5487	5487					-0.053705290646803405
FWPGEVDLD	9	Unmodified						0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.248015	1076.48148	2.2084	0.0011909	-7.8135	-0.0042134	-5.6051	-0.0030225	539.7450677219205	18.772	0.21598	18.772	18.676	18.892	0	1290	97	0.84311575	0.058991432	0.84311575	342.02347		23.930817	-0.0036606	-0.00014644	-0.0010846	NaN	10.605	347	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31464	+		6858	11393	3951	4041							-0.053705290646803405
FWPGEVDLD	9	Unmodified						0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.248015	1076.48148	1.5579	0.00084008	-7.4832	-0.0040353	-5.9254	-0.0031952	539.7463553873556	18.794	0.096048	18.78	18.731	18.828	-0.014061	1284	79	0.8468043	0.047925293	0.8452849	343.51978		19.44168	0.0036606	0.00020974	0.0010846	NaN	10.605	161	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21760	+		6859	11393	3951	4041							-0.053705290646803405
FWPPYVELL	9	Unmodified	_FWPPYVELL_					0	0	0		ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.31041785235	2	582.310418	1162.60628	1.2809	0.0007459	-3.5302	-0.0020557	-2.2493	-0.0013098	582.3084180826719	37.335	0.14448	37.338	37.266	37.41	0.0028267	1200	49	0.89836043	0.029419243	0.896841	364.09302	0	11.923218						109	7	2	NaN	NaN	NaN	0.062836	1	14716	14716		41.46	17.61	1	8783.8			6860	2368	3952	4042	5488	5488					0.03148388142517433
FWRMGPRPF	9	Unmodified	_FWRMGPRPF_					0	0	0		ENST00000456894.5_1_22:39150901-39150958:-|nuORF;ENST00000452294.5_1_22:39150683-39150958:-|nuORF	ENST00000456894.5_1_22:39150901-39150958:-|nuORF	ENST00000456894.5_1_22:39150901-39150958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.5394109873333	3	398.539411	1192.5964	1.8403	0.00073345	3.177	0.0012662	5.0174	0.0019996	398.54075322105405	18.506	0.14396	18.492	18.42	18.564	-0.01395	1482	52	0.72465914	0.031576037	0.7231397	440.40726	0	19.190155						160	7	2	NaN	NaN	NaN	0.45297	1	15610	15610		6.9844	0	1	15804			6861	7044	3953	4043	5489	5489					0.007809216561554422
FWSFILYMTYF	11	Unmodified	_FWSFILYMTYF_					0	0	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.3623244246	2	759.362324	1516.7101	1.4695	0.0011159	-10.895	-0.0082729	-9.425	-0.007157	759.3539436673385	21.97	0.19268	21.956	21.932	22.125	-0.013895	1026	40	1.0046607	0.023750246	1.0031413	406.0586	0	9.599274						147	9	3	NaN	NaN	NaN	0.6085	1	19609	19609		13.463	2.4979	1	15382			6862	2240	3954	4044	5490	5490					-0.027590728121367647
FWVCIGLL	8	Unmodified	_FWVCIGLL_					0	0	0			REV__nc|ENSG00000124493|Q14833-3|GRM4	REV__nc|ENSG00000124493|Q14833-3|GRM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.5168220814002	1	950.516822	949.509546	2.2799	0.0021671	-0.84986	-0.0008078	1.43	0.0013593	950.5155693896035	26.119	0.024128	26.119	26.119	26.143	0	288	40	1.4482387	0.023133516	1.4482387	294.2509	0	4.700226						47	2	2	NaN	NaN	NaN	0.77734	1	7081	7081		12.26	2.5137	1	3684.9	+		6863	9378	3955	4045	5491	5491					0.03277122381734898
FYADHPFIFL	10	Unmodified	_FYADHPFIFL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3187742007	2	635.318774	1268.623	1.4445	0.00091773	-1.8569	-0.0011797	-0.41237	-0.00026199	635.3178714406413	32.128	0.19304	32.128	32.08	32.273	0	1128	82	0.9424274	0.049492598	0.9424274	381.5783	0	20.03897						548	9	4	NaN	NaN	NaN	0.033206	1	18202	18202		58.235	36.4	1	87982			6864	3665	3956	4046	5492	5492					-0.0005711097155653988
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.80549964995	2	584.8055	1167.59645	2.1534	0.0012593	-1.5878	-0.00092858	0.56551	0.00033071	584.8043831746049	28.581	0.12068	28.581	28.532	28.653	0	1173	94	0.91489893	0.05694753	0.91489893	370.77725	0	23.078918						246	6	2	NaN	NaN	NaN	0.023074	1	15401	15401		68.108	33.654	1	138900			6865	1286	3957	4047	5493	5493					0.0193520013710895
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.80549964995	2	584.8055	1167.59645	1.4569	0.00085202	1.0951	0.00064045	2.5521	0.0014925	584.804082161755	28.604	0.19304	28.596	28.547	28.74	-0.0083504	1176	100	0.9130621	0.060615063	0.91154265	370.03284	0	24.565216						637	9	6	NaN	NaN	NaN	0.013314	1	14869	14869		82.858	47.562	1	177930			6866	1286	3957	4047	5494	5494					0.0193520013710895
FYAERFFKF	9	Unmodified	_FYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.8817197396666	3	418.88172	1253.62333	1.913	0.00080134	-1.4215	-0.00059543	0.49156	0.0002059	418.8810300239077	25.564	0.12058	25.564	25.515	25.636	0	1425	34	0.7599118	0.020387232	0.7599118	461.57504	0	12.383362						82	6	2	NaN	NaN	NaN	0.27608	1	17872	17872		18.233	2.9225	1	6539.2			6867	5454	3958	4048	5495	5495					0.0066630874830480025
FYAERFFKF	9	Unmodified						0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	418.88172	1253.62333	2.7693	0.00116	-2.4908	-0.0010434	0.27847	0.00011665	418.8812535960178	25.732	0.048265	25.721	25.696	25.745	-0.0116	1425	28	0.7599118	0.016682267	0.75839233	461.57507		10.132935	0.078501	-0.0010884	-0.00075972	NaN	18.233	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2414.4			6868	5454	3958	4048							0.0066630874830480025
FYAERFQRF	9	Unmodified	_FYAERFQRF_					0	0	0		nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;ENST00000486866.1_1_1:151209168-151212598:+|nuORF	nc|ENSG00000143398|Q99755-2|PIP5K1A	nc|ENSG00000143398|Q99755-2|PIP5K1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.88049027486664	3	421.88049	1262.61964	1.5198	0.00064117	1.415	0.00059697	2.9348	0.0012381	421.8810761515161	19.156	0.095934	19.156	19.132	19.228	0	1434	34	0.75435036	0.020396113	0.75435036	458.16153	0	12.387787						105	5	3	NaN	NaN	NaN	0.35794	1	18053	18053		10.244	2.4398	1	9381			6869	3420	3959	4049	5496	5496					-0.001163610255389358
FYAHIIPFL	9	Unmodified	_FYAHIIPFL_					0	0	0		nc|ENSG00000131238|P50897-2|PPT1;ENSG00000131238|ENST00000642050|PPT1	nc|ENSG00000131238|P50897-2|PPT1	nc|ENSG00000131238|P50897-2|PPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8131277168001	2	560.813128	1119.6117	1.6516	0.00092621	-0.82308	-0.00046159	0.82847	0.00046462	560.8127223232476	32.514	0.21719	32.514	32.466	32.683	0	1173	91	0.91489893	0.055137336	0.91489893	370.96274	0	22.356445						549	10	5	NaN	NaN	NaN	0.033463	1	13661	13661		54.579	18.834	1	164600			6870	2700	3960	4050	5497	5497					0.056681117249809176
FYAHIIPFL	9	Unmodified	_FYAHIIPFL_					0	0	0		nc|ENSG00000131238|P50897-2|PPT1;ENSG00000131238|ENST00000642050|PPT1	nc|ENSG00000131238|P50897-2|PPT1	nc|ENSG00000131238|P50897-2|PPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8131277168001	2	560.813128	1119.6117	1.2347	0.00069244	-1.7355	-0.00097329	-0.50079	-0.00028085	560.8121874158074	32.586	0.26547	32.583	32.486	32.751	-0.0031052	1173	85	0.91489893	0.051461518	0.9133795	370.96274	0	20.865997						629	12	5	NaN	NaN	NaN	0.015198	1	13265	13265		78.076	33.444	1	173320			6871	2700	3960	4050	5498	5498					0.056681117249809176
FYALVSQEL	9	Unmodified	_FYALVSQEL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.5564382897	1	1069.55644	1068.54916	1.8399	0.0019678	0.70587	0.00075497	2.5457	0.0027228	1069.5572402810044	28.484	0.1207	28.484	28.436	28.556	0	93	61	1.5635144	0.035347342	1.5635144	317.1659	0	7.1703796						177	6	3	NaN	NaN	NaN	0.011206	1	11498	11498		89.256	47.471	1	15017			6872	3818	3961	4051	5499	5499					0.017629208661446683
FYALVSQEL	9	Unmodified	_FYALVSQEL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5564382897	1	1069.55644	1068.54916	0.9541	0.0010205	0.50585	0.00054103	1.4599	0.0015615	1069.556743020334	28.483	0.12065	28.475	28.451	28.572	-0.0083504	90	52	1.5652816	0.030043602	1.5637622	317.52438	0	6.0944824						117	6	2	NaN	NaN	NaN	0.12328	1	11216	11216		32.453	7.4917	1	12432			6873	3818	3961	4051	5500	5500					0.017629208661446683
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2844000671	2	545.2844	1088.55425	0.7305	0.00039833	-2.7563	-0.001503	-2.0258	-0.0011046	545.2829250101497	33.624	0.12059	33.624	33.576	33.697	0	1248	52	0.8689189	0.03131038	0.8689189	352.4415	0	12.699768						201	6	4	NaN	NaN	NaN	0.078597	1	12323	12323		38.918	2.3314	1	35412			6874	4233	3962	4052	5501	5501					0.013512247287508217
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2844000671	2	545.2844	1088.55425	0.62898	0.00034297	-2.3349	-0.0012732	-1.7059	-0.00093022	545.2839963827281	33.623	0.19305	33.621	33.525	33.718	-0.0018501	1245	55	0.87076044	0.033139646	0.869241	353.18848	0	13.441742						226	9	4	NaN	NaN	NaN	0.20577	1	12018	12018		24.961	12.912	1	39289			6875	4233	3962	4052	5502	5502					0.013512247287508217
FYAVFQSAAFA	11	Unmodified	_FYAVFQSAAFA_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.30058144755	2	611.300581	1220.58661	0.79112	0.00048361	-5.5625	-0.0034004	-4.7714	-0.0029167	611.2967306530642	20.549	0.072195	20.535	20.487	20.559	-0.014141	1164	58	0.9204082	0.034895778	0.91888875	372.82086	0	14.134888						120	4	4	NaN	NaN	NaN	0.75376	1	16310	16310		3.9281	0.34868	1	12131	+		6876	13399	3963	4053	5503	5503					-0.014859878682500494
FYCCLILYKKM	11	Unmodified	_FYCCLILYKKM_					0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	712.86058007535	2	712.86058	1423.70661	0.98431	0.00070168	-2.3395	-0.0016678	-1.3552	-0.00096609	713.3616538933022	26.577	0.12062	26.566	26.494	26.614	-0.010645	1050	67	0.9900381	0.040212214	0.9885187	400.3848	0	16.26239						182	6	3	NaN	NaN	NaN	0.67707	1	19286	19286		8.962	1.9776	1	17778	+		6877	13437	3964	4054	5504	5504					0.011702178179803013
FYCCLILYKKM	11	Unmodified						0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	712.86058	1423.70661	1.3199	0.00094089	-3.1332	-0.0022336	-1.8134	-0.0012927	712.8602833248532	26.577	0.12068	26.577	26.529	26.65	0	1050	70	0.9900381	0.042042315	0.9900381	400.3848		17.002502	0.0054607	-0.0005039	0.00075972	NaN	8.962	226	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19311	+		6878	13437	3964	4054							0.011702178179803013
FYCCLILYKKM	11	Unmodified						0	0	0			REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	REV__tr|U7SMN6|U7SMN6_FUSNUExtracellularproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01761PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	712.86058	1423.70661	0.98431	0.00070168	-2.3395	-0.0016678	-1.3552	-0.00096609	713.3616538933022	26.577	0.12062	26.566	26.494	26.614	-0.010645	1050	67	0.9900381	0.040212214	0.9885187	400.3848		16.26239	-0.0054607	0.0006277	-0.00075972	NaN	8.962	182	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17778	+		6879	13437	3964	4054							0.011702178179803013
FYCISMQW	8	Unmodified	_FYCISMQW_					0	0	0		FUBP1-USP33|2|fusion;FUBP1-USP33|1|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2302560066001	2	539.230256	1076.44596	0.91263	0.00049212	2.0219	0.0010903	2.9346	0.0015824	539.2315543534306	32.899	0.21701	32.897	32.849	33.066	-0.0024757	1281	43	0.84864825	0.025814295	0.8471288	344.2679	0	10.471985						201	10	3	NaN	NaN	NaN	0.78264	1	11499	11499		11.548	1.8025	1	26985			6880	7804	3965	4055	5505	5505					-0.08920606117658281
FYCYTCYVPV	10	Unmodified	_FYCYTCYVPV_					0	0	0		ENST00000560735.5_1_15:49917364-49923047:+|nuORF;ENST00000561188.5_1_15:49917364-49917658:+|nuORF;nc|ENSG00000104047|Q8N5C7-3|DTWD1;ENST00000559223.5_1_15:49917364-49924369:+|nuORF;ENSG00000104047|ENST00000403028|DTWD1	ENST00000560735.5_1_15:49917364-49923047:+|nuORF	ENST00000560735.5_1_15:49917364-49923047:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2695781323499	2	629.269578	1256.5246	2.014	0.0012674	3.9752	0.0025015	5.9892	0.0037688	629.2720168449182	17.837	0.14384	17.837	17.741	17.885	0	1176	31	0.9130621	0.018369138	0.9130621	369.72693	0	7.438263						91	7	2	NaN	NaN	NaN	0.75966	1	17921	17921		3.9685	0.7569	1	6716.4			6881	1458	3966	4056	5506	5506					-0.09339798603264171
FYCYTCYVPV	10	Unmodified						0	0	0		ENST00000560735.5_1_15:49917364-49923047:+|nuORF;ENST00000561188.5_1_15:49917364-49917658:+|nuORF;nc|ENSG00000104047|Q8N5C7-3|DTWD1;ENST00000559223.5_1_15:49917364-49924369:+|nuORF;ENSG00000104047|ENST00000403028|DTWD1	ENST00000560735.5_1_15:49917364-49923047:+|nuORF	ENST00000560735.5_1_15:49917364-49923047:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	629.269578	1256.5246	2.0652	0.0012996	2.7722	0.0017445	4.8374	0.003044	629.2711203178177	17.858	0.11985	17.844	17.748	17.868	-0.013786	1173	31	0.91489893	0.018369138	0.9133795	370.4707		7.4382324	0.0035266	-0.0008111	0.00015869	NaN	3.9685	85	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5219.1			6882	1458	3966	4056							-0.09339798603264171
FYDDKVSAL	9	Unmodified	_FYDDKVSAL_					0	0	0		nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant;nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-4|TNS3	nc|ENSG00000136205|Q68CZ2-4|TNS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.263664625	2	529.263665	1056.51278	1.4872	0.00078711	-0.77811	-0.00041183	0.70906	0.00037528	529.2633062025318	20.549	0.19246	20.549	20.453	20.646	0	1278	76	0.85049206	0.046099424	0.85049206	345.09814	0	18.705444						320	9	4	NaN	NaN	NaN	0.017558	1	10935	10935		75.089	33.304	1	65177			6883	3000	3967	4057	5507	5507					-0.013219560305742561
FYDEDISF	8	Unmodified	_FYDEDISF_					0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.4305690740998	1	1035.43057	1034.42329	1.2897	0.0013354	-4.6221	-0.0047858	-3.3324	-0.0034505	1035.4252546533169	29.4	0.096502	29.393	29.344	29.441	-0.0077209	309	43	1.435777	0.024932861	1.4342575	291.37628	0	5.0598755						87	5	2	NaN	NaN	NaN	0.77489	1	9745	9745		12.588	3.4647	1	7031.7	+		6884	13510	3968	4058	5508	5508					-0.09254210709946165
FYDEDISF	8	Unmodified						0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1035.43057	1034.42329	1.398	0.0014475	-3.6636	-0.0037934	-2.2656	-0.0023459	1035.4269194427834	29.401	0.14485	29.401	29.353	29.498	0	312	46	1.433996	0.02671516	1.433996	291.01483		5.42157	0.0042382	0.0004293	-0.00013079	NaN	12.588	100	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7020	+		6885	13510	3968	4058							-0.09254210709946165
FYDEDISF	8	Unmodified						0	0	0			REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	REV__tr|U7SU94|U7SU94_FUSNUGTPpyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01069PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1035.43057	1034.42329	1.2897	0.0013354	-4.6221	-0.0047858	-3.3324	-0.0034505	1035.4252546533169	29.4	0.096502	29.393	29.344	29.441	-0.0077209	309	43	1.435777	0.024932861	1.4342575	291.37628		5.0598755	-0.0042382	-0.00056309	0.00013079	NaN	12.588	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7031.7	+		6886	13510	3968	4058							-0.09254210709946165
FYDIVAEL	8	Unmodified	_FYDIVAEL_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000447222.5_1_7:75615553-75615796:+|nuORF;ENST00000394893.5_1_7:75615553-75615796:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4927754003999	1	969.492775	968.485499	1.3817	0.0013396	0.37681	0.00036531	1.7585	0.0017049	969.4925179992756	32.08	0.096497	32.08	32.056	32.152	0	249	55	1.4713576	0.03199196	1.4713576	298.86435	0	6.49823						96	5	2	NaN	NaN	NaN	0.67593	1	7564	7564		20.555	4.1388	1	9556.8			6887	2549	3969	4059	5509	5509					-4.3957097659586E-06
FYDIVAEL	8	Unmodified	_FYDIVAEL_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000447222.5_1_7:75615553-75615796:+|nuORF;ENST00000394893.5_1_7:75615553-75615796:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.4927754003999	1	969.492775	968.485499	0.78193	0.00075808	-1.044	-0.0010121	-0.26202	-0.00025403	969.4910905817717	32.079	0.072403	32.075	32.051	32.123	-0.0037613	249	55	1.4713576	0.03199196	1.4698381	298.86435	0	6.49823						125	4	3	NaN	NaN	NaN	0.77489	1	7416	7416		12.588	0	1	9610.9			6888	2549	3969	4059	5510	5510					-4.3957097659586E-06
FYDLAAFIT	9	Unmodified	_FYDLAAFIT_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5349745660997	1	1060.53497	1059.5277	1.1472	0.0012167	-0.84757	-0.00089887	0.29967	0.00031781	1060.5345251536141	33.504	0.14475	33.504	33.431	33.576	0	135	79	1.5387528	0.046019673	1.5387528	312.1768	0	9.336304						257	7	3	NaN	NaN	NaN	0.36492	1	11063	11063		15.175	1.1338	1	20310			6889	5615	3970	4060	5511	5511					0.0003153583738821908
FYDLSAISL	9	Unmodified	_FYDLSAISL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5298891881998	1	1028.52989	1027.52261	0.83255	0.0008563	3.6096	0.0037126	4.4421	0.0045689	1028.5336266385884	32.151	0.12059	32.148	32.099	32.22	-0.0037613	117	73	1.5493695	0.042466283	1.54785	314.45645	0	8.618866						180	6	3	NaN	NaN	NaN	0.056143	1	9482	9482		44.302	12.741	1	13291			6890	5012	3971	4061	5512	5512					0.009952319747981164
FYDLSAISL	9	Unmodified						0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.52989	1027.52261	1.4398	0.0014809	3.3804	0.0034768	4.8202	0.0049577	1028.5343191551917	32.152	0.096512	32.152	32.128	32.225	0	123	76	1.5458313	0.044233322	1.5458313	313.73837		8.977509	0.0024194	-0.00015531	-0.0010093	NaN	44.302	182	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16113			6891	5012	3971	4061							0.009952319747981164
FYDPDTSIIYL	11	Unmodified	_FYDPDTSIIYL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C;ENST00000547361.1_1_12:109046046-109052582:-|nuORF;ENST00000552030.5_1_12:109042755-109052582:-|nuORF	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.8293686767502	2	673.829369	1345.64418	0.67278	0.00045334	-0.48057	-0.00032382	0.19221	0.00012952	673.8294764610454	32.972	0.19286	32.969	32.921	33.114	-0.0024757	1092	58	0.9644182	0.03479433	0.96289873	390.24133	0	14.079132						184	9	3	NaN	NaN	NaN	0.079637	1	18622	18622		42.318	21.869	1	20442			6892	1783	3972	4062	5513	5513					-0.01481190453318959
FYDVTNAA	8	Unmodified	_FYDVTNAA_					0	0	0			REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4097740524999	1	900.409774	899.402498	1.7343	0.0015616	5.4618	0.0049178	7.1961	0.0064794	900.4154397915767	19.683	0.21661	19.669	19.621	19.837	-0.014141	438	94	1.359022	0.05543518	1.3575026	276.34378	0	11.272186						291	10	3	NaN	NaN	NaN	0.65075	1	5936	5936		22.126	1.5709	1	51087	+		6893	13284	3973	4063	5514	5514					-0.05122756298965214
FYDVTNAA	8	Unmodified						0	0	0			REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.409774	899.402498	2.0415	0.0018382	4.7111	0.0042419	6.7526	0.0060801	900.4144211430471	19.66	0.21613	19.66	19.612	19.828	0	441	79	1.3572328	0.046501517	1.3572328	275.97998		9.455627	-0.0044029	-0.00028779	-0.00013487	NaN	22.126	318	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56340	+		6894	13284	3973	4063							-0.05122756298965214
FYDVTNAA	8	Unmodified						0	0	0			REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	REV__OR6C74|p.H174Y|1|0.05|ENSG00000197706|chr12:55247807-55247807|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.409774	899.402498	1.7343	0.0015616	5.4618	0.0049178	7.1961	0.0064794	900.4154397915767	19.683	0.21661	19.669	19.621	19.837	-0.014141	438	94	1.359022	0.05543518	1.3575026	276.34378		11.272186	0.0044029	0.00038811	0.00013487	NaN	22.126	291	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51087	+		6895	13284	3973	4063							-0.05122756298965214
FYDYKVVKY	9	Unmodified	_FYDYKVVKY_					0	0	0		tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8186070252001	2	612.818607	1223.62266	1.2103	0.00074171	-7.0539	-0.0043227	-5.8435	-0.003581	612.8138613998785	23.199	0.096527	23.186	23.162	23.258	-0.013294	1164	88	0.9204082	0.0532735	0.91888875	372.81052	0	21.5784						127	5	2	NaN	NaN	NaN	0.67989	1	16377	16377		0.92586	0.0070595	1	14436			6896	13853	3974	4064	5515	5515					0.01979469308616899
FYDYKVVKY	9	Unmodified						0	0	0		tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.818607	1223.62266	1.3672	0.00083783	-3.4545	-0.002117	-2.0873	-0.0012791	612.8160264920338	23.296	0.07238	23.296	23.272	23.345	0	1146	52	0.93142134	0.03121245	0.93142134	377.2714		12.642578	0.055155	0.0017318	0.0062663	NaN	0.92586	95	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12604			6897	13853	3974	4064							0.01979469308616899
FYFDLNSDSM	10	Unmodified	_FYFDLNSDSM_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.7553464539	2	619.755346	1237.49614	0.58793	0.00036438	-10.38	-0.006433	-9.7919	-0.0060686	619.7504466164504	27.639	0.12063	27.629	27.605	27.726	-0.009552	1164	85	0.9204082	0.05144483	0.91888875	372.76392	0	20.835052						208	6	3	NaN	NaN	NaN	0.72369	1	16726	16726		6.4299	0.17972	1	23374			6898	2626	3975	4065	5516	5516					-0.11310824978841083
FYFEIPRTF	9	Unmodified	_FYFEIPRTF_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3109491686	2	610.310949	1218.60735	0.65037	0.00039693	-1.1082	-0.00067634	-0.45781	-0.00027941	610.8119511356308	30.124	0.09654	30.118	30.045	30.142	-0.0064106	1125	40	0.9442611	0.023837447	0.94274163	382.48965	0	9.655792						141	5	4	NaN	NaN	NaN	0.31471	1	16268	16268		17.97	2.507	1	10332			6899	3894	3976	4066	5517	5517					0.006786025114024596
FYFFLILC	8	Unmodified	_FYFFLILC_					0	0	0		ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2775321627001	2	533.277532	1064.54051	1.8907	0.0010083	-3.0784	-0.0016416	-1.1877	-0.00063338	533.2755532747404	28.436	0.096539	28.436	28.388	28.484	0	1242	49	0.87260187	0.029460669	0.87260187	354.03513	0	11.952881						109	5	2	NaN	NaN	NaN	0.71635	1	11330	11330		18.034	0.23551	1	17349			6900	7325	3977	4067	5518	5518					0.010822756959896651
FYFFYDTFF	9	Unmodified	_FYFFYDTFF_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.7842328915999	2	648.784233	1295.55391	1.4326	0.00092948	-1.4692	-0.00095317	-0.036519	-2.3693E-05	648.7834166097418	24.357	0.16887	24.357	24.333	24.502	0	987	133	1.0283957	0.08021712	1.0283957	416.29266	0	32.47177						565	8	4	NaN	NaN	NaN	0.6907	1	18692	18692		0	0	1	68382	+		6901	10424	3978	4068	5519	5519					-0.0820419499111722
FYFFYDTFF	9	Unmodified						0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	648.784233	1295.55391	1.4326	0.00092948	-1.4692	-0.00095317	-0.036519	-2.3693E-05	648.7834166097418	24.357	0.16887	24.357	24.333	24.502	0	987	133	1.0283957	0.08021712	1.0283957	416.29266		32.47177	0.0065043	0.00012494	0.001672	NaN	0	565	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68382	+		6902	10424	3978	4068							-0.0820419499111722
FYFQFSFI	8	Unmodified	_FYFQFSFI_					0	0	0			REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7683858621501	2	549.768386	1097.52222	1.398	0.0007686	0.013493	7.418E-06	1.4115	0.00077602	549.7680402584332	34.106	0.072403	34.105	34.08	34.153	-0.0012474	1188	40	0.90571284	0.023886383	0.9041934	367.32794	0	9.687561						51	4	2	NaN	NaN	NaN	0.81251	1	12405	12405		7.5404	0	1	5009.3	+		6903	12781	3979	4069	5520	5520					-0.022641429543682534
FYFQFSFI	8	Unmodified						0	0	0			REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.768386	1097.52222	0.85278	0.00046883	1.0418	0.00057276	1.8946	0.0010416	549.7676920227606	34.107	0.072399	34.107	34.083	34.155	0	1188	34	0.90571284	0.020215929	0.90571284	367.32794		8.198914	0.001237	0.00060689	0.00075972	NaN	7.5404	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5881	+		6904	12781	3979	4069							-0.022641429543682534
FYFQFSFI	8	Unmodified						0	0	0			REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	REV__ENST00000560567.5_1_15:64710826-64716404:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.768386	1097.52222	1.398	0.0007686	0.013493	7.418E-06	1.4115	0.00077602	549.7680402584332	34.106	0.072403	34.105	34.08	34.153	-0.0012474	1188	40	0.90571284	0.023886383	0.9041934	367.32794		9.687561	-0.001237	-0.0005238	-0.00075972	NaN	7.5404	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5009.3	+		6905	12781	3979	4069							-0.022641429543682534
FYFSCIMQYF	10	Unmodified	_FYFSCIMQYF_					0	0	0		OR5D14|p.M100I|1|0.28|ENSG00000186113|chr11:55795855-55795855|G/T|missense_variant	OR5D14|p.M100I|1|0.28|ENSG00000186113|chr11:55795855-55795855|G/T|missense_variant	OR5D14|p.M100I|1|0.28|ENSG00000186113|chr11:55795855-55795855|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.7906777152	2	674.790678	1347.5668	0.74966	0.00050586	-8.6047	-0.0058064	-7.8551	-0.0053005	674.7846412859649	29.256	0.19306	29.248	29.175	29.368	-0.0077229	1101	73	0.95892316	0.043976784	0.9574037	388.01224	0	17.794464						331	9	3	NaN	NaN	NaN	0.27719	1	18638	18638		28.896	0	1	42433			6906	8084	3980	4070	5521	5521					-0.09307823194876619
FYFVGYFI	8	Unmodified	_FYFVGYFI_					0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5236815983	1	1055.52368	1054.51641	1.6438	0.001735	1.3448	0.0014195	2.9886	0.0031545	1055.5261842944674	30.68	0.096516	30.68	30.632	30.728	0	99	49	1.5599792	0.028283834	1.5599792	316.50247	0	5.738495						80	5	2	NaN	NaN	NaN	0.77734	1	10835	10835		12.26	7.8466	1	6073.4	+		6907	13441	3981	4071	5522	5522					-0.008672414660395589
FYFVGYFI	8	Unmodified						0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1055.52368	1054.51641	1.6438	0.001735	1.3448	0.0014195	2.9886	0.0031545	1055.5261842944674	30.68	0.096516	30.68	30.632	30.728	0	99	49	1.5599792	0.028283834	1.5599792	316.50247		5.738495	0.015462	-1.1501E-06	-0.0001241	NaN	12.26	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6073.4	+		6908	13441	3981	4071							-0.008672414660395589
FYFVGYFI	8	Unmodified						0	0	0			REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	REV__tr|U7SNA9|U7SNA9_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01773PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1055.52368	1054.51641	1.6576	0.0017496	1.3476	0.0014224	3.0051	0.003172	1055.5233139979575	30.655	0.072397	30.649	30.625	30.698	-0.0057545	96	64	1.5617468	0.03712058	1.5602274	316.86108		7.531372	-0.015462	1.7454E-06	0.0001241	NaN	12.26	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5345.7	+		6909	13441	3981	4071							-0.008672414660395589
FYFYLQTICA	10	Unmodified	_FYFYLQTICA_					0	0	0			REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.8046423702001	2	634.804642	1267.59473	1.7404	0.0011048	-2.4398	-0.0015488	-0.69942	-0.000444	634.8016062102697	29.86	0.09655	29.86	29.811	29.908	0	1149	82	0.92958635	0.04951924	0.92958635	376.3824	0	20.049988						99	5	2	NaN	NaN	NaN	0.5917	1	18179	18179		15.463	4.2923	1	11680	+		6910	13285	3982	4072	5523	5523					-0.02836176943128521
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7663744894501	2	549.766374	1097.5182	1.2872	0.00070767	-3.03	-0.0016658	-1.7428	-0.00095811	549.764274137253	26.77	0.14529	26.77	26.746	26.891	0	1206	76	0.894683	0.04598999	0.894683	362.8546	0	18.652039						261	7	4	NaN	NaN	NaN	0.03623	1	12735	12735		52.758	23.16	1	66161			6911	1050	3983	4073	5524	5524					-0.026662324480867028
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7663744894501	2	549.766374	1097.5182	1.1575	0.00063635	-0.38693	-0.00021272	0.77057	0.00042363	549.7656414871126	26.794	0.14478	26.783	26.759	26.904	-0.010645	1203	70	0.8965218	0.042301655	0.89500237	363.60037	0	17.156158						256	7	4	NaN	NaN	NaN	0.032417	1	12404	12404		55.947	27.281	1	56462			6912	1050	3983	4073	5525	5525					-0.026662324480867028
FYGTVGGT	8	Unmodified	_FYGTVGGT_					0	0	0			REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.3777456426002	1	801.377746	800.370469	1.3845	0.0011095	4.1598	0.0033336	5.5443	0.0044431	801.3801076256032	31.573	0.048294	31.573	31.549	31.597	0	480	52	1.3339561	0.030467987	1.3339561	271.7521	0	6.206909						63	3	2	NaN	NaN	NaN	0.8439	1	4750	4750		3.1533	0	1	2889.8	+		6913	10601	3984	4074	5526	5526					-0.037701239820762567
FYGTVGGT	8	Unmodified						0	0	0			REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	801.377746	800.370469	1.3845	0.0011095	4.1598	0.0033336	5.5443	0.0044431	801.3801076256032	31.573	0.048294	31.573	31.549	31.597	0	480	52	1.3339561	0.030467987	1.3339561	271.7521		6.206909	0.087533	-0.0015498	-0.00013611	NaN	3.1533	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2889.8	+		6914	10601	3984	4074							-0.037701239820762567
FYGTVGGT	8	Unmodified						0	0	0			REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	REV__PSG6|p.G129V|1|0.17|ENSG00000170848|chr19:42916166-42916166|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	801.377746	800.370469	1.7407	0.0013949	8.7512	0.007013	10.492	0.008408	801.38441446857	31.403	0.048235	31.398	31.374	31.422	-0.0050716	477	37	1.3357477	0.0214988	1.3342283	272.1171		4.3796997	-0.087533	0.0021296	0.00013611	NaN	3.1533	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3384.4	+		6915	10601	3984	4074							-0.037701239820762567
FYGVFTSQW	9	Unmodified	_FYGVFTSQW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1134.5254725123	1	1134.52547	1133.5182	1.7778	0.0020169	0.0011151	1.2652E-06	1.7789	0.0020182	1134.525145784494	30.946	0.16894	30.946	30.897	31.066	0	72	85	1.5758814	0.0494653	1.5758814	319.4409	0	10.0269165						305	8	2	NaN	NaN	NaN	0.0021374	1	14217	14217		110.61	43.949	1	77284			6916	5387	3985	4075	5527	5527					-0.0432223244808938
FYGVFTSQW	9	Unmodified	_FYGVFTSQW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1134.5254725123	1	1134.52547	1133.5182	1.1793	0.0013379	0.42763	0.00048515	1.6069	0.0018231	1134.5253933403496	30.945	0.33788	30.94	30.891	31.229	-0.0050716	72	85	1.5758814	0.0494653	1.5743619	319.4409	0	10.026947						539	15	3	NaN	NaN	NaN	9.7712E-12	1	13766	13766		144.65	61.689	1	83087			6917	5387	3985	4075	5528	5528					-0.0432223244808938
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.21710240979996	3	420.217102	1257.62948	1.8241	0.00076653	-2.4091	-0.0010123	-0.58497	-0.00024581	420.55014938109764	19.708	0.28831	19.708	19.636	19.924	0	1455	52	0.7413668	0.031541824	0.7413668	450.29514	0	19.15802						345	13	4	NaN	NaN	NaN	0.25548	1	17950	17950		15.311	8.881	1	60559			6918	1254	3986	4076	5529	5529					0.010968269798240726
FYHEAVVLF	9	Unmodified	_FYHEAVVLF_					0	0	0		ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31;ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000464241.5_1_2:74710222-74719357:+|nuORF	ENST00000464241.5_1_2:74710222-74719357:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.7923922747	2	562.792392	1123.57023	1.5491	0.00087185	1.4053	0.00079091	2.9545	0.0016628	562.791992850569	26.988	0.096479	26.988	26.94	27.036	0	1203	103	0.8965218	0.062556505	0.8965218	363.4958	0	25.363586						229	5	3	NaN	NaN	NaN	0.39244	1	13827	13827		14.042	0	1	43327			6919	2010	3987	4077	5530	5530					0.013389309656531623
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.21335794703333	3	432.213358	1293.61824	1.9182	0.00082909	-1.9816	-0.00085649	-0.063393	-2.7399E-05	432.21260169844356	21.994	0.38585	21.994	21.922	22.308	0	1440	88	0.7506418	0.053771615	0.7506418	455.79108	0	32.650208						864	17	5	NaN	NaN	NaN	0.39244	1	18650	18650		12.57	5.1143	1	440670			6920	3732	3988	4078	5531	5531					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.8163986872501	2	647.816399	1293.61824	2.4202	0.0015678	-1.9555	-0.0012668	0.46465	0.00030101	647.81521766513	21.994	0.40996	21.994	21.922	22.332	0	1065	136	0.9808926	0.0824343	0.9808926	397.06976	0	33.36978						1196	18	6	NaN	NaN	NaN	0.0047854	1	18651	18651		103.03	64.895	1	619530			6921	3732	3988	4078	5532	5532					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.8163986872501	2	647.816399	1293.61824	1.8007	0.0011665	-0.8759	-0.00056742	0.92482	0.00059911	647.8151381411967	22.405	0.1446	22.405	22.308	22.453	0	1068	67	0.97906286	0.04027295	0.97906286	396.3291	0	16.302673						181	7	3	NaN	NaN	NaN	0.10956	1	18652	18652		34.439	20.014	1	20729			6922	3732	3988	4078	5533	5533					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.8163986872501	2	647.816399	1293.61824	2.0253	0.001312	-0.64598	-0.00041848	1.3793	0.00089353	647.8159022216485	22.911	0.21697	22.911	22.79	23.007	0	1068	49	0.97906286	0.029279947	0.97906286	396.3291	0	11.852661						210	10	3	NaN	NaN	NaN	0.27442	1	18653	18653		20.555	9.9505	1	21570			6923	3732	3988	4078	5534	5534					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.21335794703333	3	432.213358	1293.61824	1.6921	0.00073134	-2.1511	-0.00092973	-0.45899	-0.00019838	432.2122353271423	23.465	0.072453	23.451	23.427	23.5	-0.013294	1437	46	0.7524962	0.027818918	0.75097674	456.91705	0	16.891693						103	4	3	NaN	NaN	NaN	0.61413	1	17816	17816		2.5994	0.90097	1	8500.2			6924	3732	3988	4078	5535	5535					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.21335794703333	3	432.213358	1293.61824	1.4199	0.00061369	-1.7858	-0.00077184	-0.36589	-0.00015814	432.21247020670313	22.284	0.43374	22.27	22.101	22.535	-0.013731	1440	82	0.7506418	0.05005777	0.7491224	455.79108	0	30.395172						973	19	4	NaN	NaN	NaN	0.12945	1	17817	17817		27.296	8.7381	1	421360			6925	3732	3988	4078	5536	5536					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.8163986872501	2	647.816399	1293.61824	2.0305	0.0013154	-1.7396	-0.0011269	0.29088	0.00018844	647.8152240419787	22.284	0.62671	22.27	22.101	22.728	-0.013731	1065	109	0.9808926	0.065915406	0.97937316	397.06976	0	26.682861						1778	27	5	NaN	NaN	NaN	0.0072287	1	17818	17818		98.041	57.084	1	733080			6926	3732	3988	4078	5537	5537					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.8163986872501	2	647.816399	1293.61824	1.8511	0.0011991	-0.53229	-0.00034482	1.3188	0.00085432	647.8162556269042	23.248	0.12062	23.234	23.186	23.307	-0.013294	1062	55	0.9827221	0.032932818	0.98120266	397.81036	0	13.33136						193	6	3	NaN	NaN	NaN	0.043119	1	17819	17819		49.833	38.094	1	16064			6927	3732	3988	4078	5538	5538					-0.016819951142906575
FYHKYFNYL	9	Unmodified						0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	647.816399	1293.61824	1.854	0.0012011	-0.94056	-0.00060931	0.91348	0.00059177	648.3172784568378	23.151	0.12039	23.138	23.017	23.138	-0.013294	1065	46	0.9808926	0.027442575	0.97937316	397.06976		11.108856	0.11343	-0.00023525	0.00015513	NaN	20.555	117	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9184.6			6928	3732	3988	4078							-0.016819951142906575
FYHRGIVKEP	10	Unmodified	_FYHRGIVKEP_					0	0	0			REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.3405722753	2	623.340572	1244.66659	1.222	0.00076175	-6.2883	-0.0039198	-5.0663	-0.003158	623.3373381453505	32.514	0.048256	32.514	32.49	32.539	0	1128	49	0.9424274	0.029340029	0.9424274	381.6574	0	11.881897						53	3	2	NaN	NaN	NaN	0.77421	1	17635	17635		1.9246	0.22244	1	5478.6	+		6929	12571	3989	4079	5539	5539					0.0540449852560414
FYHRGIVKEP	10	Unmodified						0	0	0			REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.340572	1244.66659	1.222	0.00076175	-6.2883	-0.0039198	-5.0663	-0.003158	623.3373381453505	32.514	0.048256	32.514	32.49	32.539	0	1128	49	0.9424274	0.029340029	0.9424274	381.6574		11.881897	0.0021038	7.8986E-05	-0.0010738	NaN	1.9246	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5478.6	+		6930	12571	3989	4079							0.0540449852560414
FYHRGIVKEP	10	Unmodified						0	0	0			REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	REV__ENST00000514498.1_1_4:166325831-166326179:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.340572	1244.66659	0.94351	0.00058813	-6.4161	-0.0039994	-5.4726	-0.0034113	623.3370515949304	32.513	0.048294	32.51	32.51	32.558	-0.0031052	1122	46	0.9460945	0.027504742	0.9445751	383.1425		11.138702	-0.0021038	-8.029E-05	0.0010738	NaN	1.9246	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4400.1	+		6931	12571	3989	4079							0.0540449852560414
FYIASTFF	8	Unmodified	_FYIASTFF_					0	0	0			REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.2472862793	2	498.247286	994.48002	1.5712	0.00078282	5.8245	0.002902	7.3956	0.0036848	498.2511191174069	20.791	0.072266	20.776	20.728	20.801	-0.014086	1341	28	0.8117308	0.016631722	0.81021136	329.63443	0	6.7539673						44	4	2	NaN	NaN	NaN	0.8439	1	8204	8204		3.1533	0.69183	1	2884.4	+		6932	12128	3990	4080	5540	5540					-0.017441183627624923
FYIERDTGNLF	11	Unmodified	_FYIERDTGNLF_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8380593761001	2	687.838059	1373.66157	2.3528	0.0016183	-3.1257	-0.00215	-0.77287	-0.00053161	687.8365068779486	25.781	0.096519	25.781	25.757	25.853	0	1086	67	0.9680805	0.04026431	0.9680805	391.64203	0	16.289124						147	5	3	NaN	NaN	NaN	0.22707	1	19836	19836		28.236	4.9018	1	27857			6933	2894	3991	4081	5541	5541					-0.010318501276742609
FYIERDTGNLF	11	Unmodified	_FYIERDTGNLF_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.8380593761001	2	687.838059	1373.66157	2.0749	0.0014272	-1.231	-0.0008467	0.84393	0.00058049	687.8376435817115	25.805	0.16894	25.793	25.696	25.865	-0.0116	1086	58	0.9680805	0.034783065	0.9665611	391.64203	0	14.071686						167	8	3	NaN	NaN	NaN	0.081525	1	18903	18903		41.839	10.163	1	28764			6934	2894	3991	4081	5542	5542					-0.010318501276742609
FYIESISFL	9	Unmodified	_FYIESISFL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENST00000470070.6_1_3:69247847-69370051:-|nuORF	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.5768393808	1	1118.57684	1117.56956	0.83392	0.00093281	-1.8147	-0.0020299	-0.98082	-0.0010971	1118.5737080131466	35.553	0.12064	35.553	35.505	35.626	0.00052643	57	70	1.5847093	0.040608644	1.5831898	321.28555	0	8.233032						127	6	2	NaN	NaN	NaN	0.025843	1	13182	13182		64.55	19.911	1	10039			6935	1963	3992	4082	5543	5543					0.01548091525955897
FYIHEVQEL	9	Unmodified	_FYIHEVQEL_					0	0	0		ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2980387586	2	589.298039	1176.58152	2.0581	0.0012128	-5.9845	-0.0035267	-3.9264	-0.0023138	589.2942182730559	23.296	0.21697	23.296	23.152	23.369	0	1176	79	0.9130621	0.04778564	0.9130621	369.99988	0	19.364166						306	10	3	NaN	NaN	NaN	0.057383	1	15702	15702		49.961	19.351	1	58975			6936	3644	3993	4083	5544	5544					0.00029708269130424014
FYIHEVQEL	9	Unmodified	_FYIHEVQEL_					0	0	0		ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	ENST00000460168.1_1_10:69726418-69749980:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2980387586	2	589.298039	1176.58152	1.6299	0.00096049	-6.6851	-0.0039395	-5.0552	-0.002979	589.2934669036596	23.32	0.24128	23.307	23.186	23.427	-0.013296	1176	76	0.9130621	0.045945227	0.91154265	369.99988	0	18.618378						296	11	3	NaN	NaN	NaN	0.23499	1	15132	15132		26.115	2.9974	1	57073			6937	3644	3993	4083	5545	5545					0.00029708269130424014
FYILSPLNL	9	Unmodified	_FYILSPLNL_					0	0	0		ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.31041785235	2	540.310418	1078.60628	1.5427	0.00083353	-1.3015	-0.00070323	0.24115	0.0001303	540.3109527102991	36.422	0.096523	36.422	36.422	36.519	0	1221	31	0.885486	0.018399	0.885486	359.20267	0	7.463623						55	5	2	NaN	NaN	NaN	0.074859	1	11928	11928		39.459	14.498	1	4222.8			6938	5675	3994	4084	5546	5546					0.07012388142516102
FYILSPLNL	9	Unmodified						0	0	0		ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	ENST00000466367.5_1_9:140500199-140508236:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.310418	1078.60628	2.1902	0.0011834	-3.8291	-0.0020689	-1.6389	-0.00088551	540.3080863462789	36.445	0.048145	36.446	36.422	36.47	0.0016785	1218	28	0.8873258	0.01655817	0.8858064	359.949		6.716919	0.011967	-0.0010214	0.00016018	NaN	39.459	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3088.4			6939	5675	3994	4084							0.07012388142516102
FYINGQNQI	9	Unmodified	_FYINGQNQI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7747308378001	2	548.774731	1095.53491	1.8676	0.0010249	6.5099	0.0035725	8.3775	0.0045973	548.7787316939902	23.176	0.16871	23.176	23.152	23.32	0	1251	70	0.8670771	0.04236573	0.8670771	351.6664	0	17.182556						230	8	4	NaN	NaN	NaN	0.36492	1	12646	12646		15.175	1.1338	1	55761			6940	3126	3995	4085	5547	5547					-0.009037315621299058
FYINGQNQI	9	Unmodified	_FYINGQNQI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7747308378001	2	548.774731	1095.53491	1.7317	0.00095031	8.0995	0.0044448	9.8312	0.0053951	548.7792607133239	23.199	0.12065	23.186	23.162	23.283	-0.013294	1251	55	0.8670771	0.033161104	0.8655577	351.66638	0	13.449402						218	6	3	NaN	NaN	NaN	0.021105	1	12322	12322		70.6	44.799	1	56026			6941	3126	3995	4085	5548	5548					-0.009037315621299058
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2980387586001	2	595.298039	1188.58152	1.5952	0.00094965	1.2132	0.00072222	2.8085	0.0016719	595.2993477454644	30.198	0.14479	30.198	30.173	30.318	0	1197	79	0.9001988	0.047770202	0.9001988	364.7446	0	19.355652						394	7	5	NaN	NaN	NaN	0.011581	1	16113	16113		69.233	31.93	1	96267			6942	2195	3996	4086	5549	5549					-0.00522291730840152
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENST00000587027.1_1_16:4909049-4918847:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENST00000587027.1_1_16:4909049-4918847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2980387586001	2	595.298039	1188.58152	0.77414	0.00046084	1.0082	0.00060019	1.7823	0.001061	595.2990078605905	30.197	0.19303	30.19	30.142	30.335	-0.0064106	1194	97	0.902037	0.05880046	0.9005176	365.4894	0	23.82489						382	9	5	NaN	NaN	NaN	0.064658	1	15498	15498		50.831	7.836	1	88713			6943	2195	3996	4086	5550	5550					-0.00522291730840152
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3058637907001	2	602.305864	1202.59717	1.0331	0.00062223	-1.4772	-0.00088972	-0.44412	-0.00026749	602.3062380871571	31.138	0.31376	31.133	30.988	31.302	-0.0050716	1182	82	0.9093879	0.049583375	0.90786844	368.41855	0	20.087616						772	14	5	NaN	NaN	NaN	0.082901	1	15897	15897		66.481	37.586	1	205790			6944	3967	3997	4087	5551	5551					0.0039799478618078865
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-6|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8529811588	2	636.852981	1271.69141	1.7499	0.0011145	-2.9568	-0.0018831	-1.2069	-0.0007686	636.8504533960095	27.905	0.12066	27.905	27.857	27.977	0	1107	49	0.9552588	0.029321015	0.9552588	386.76355	0	11.871429						121	6	3	NaN	NaN	NaN	0.48069	1	18266	18266		19.164	7.9933	1	14626			6945	2137	3998	4088	5552	5552					0.06643133608326934
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-6|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8529811588	2	636.852981	1271.69141	1.3275	0.00084544	-3.31	-0.002108	-1.9825	-0.0012625	636.850554770298	27.904	0.14479	27.895	27.87	28.015	-0.009552	1113	52	0.9515937	0.031161964	0.95007426	385.27963	0	12.616821						119	7	2	NaN	NaN	NaN	0.079637	1	17454	17454		42.318	26.855	1	17767			6946	2137	3998	4088	5553	5553					0.06643133608326934
FYIPSTILL	9	Unmodified	_FYIPSTILL_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.618310265	1	1066.61831	1065.61103	1.5938	0.0016999	-0.1482	-0.00015807	1.4456	0.0015419	1066.6179488924836	35.988	0.072315	35.988	35.964	36.036	0	69	85	1.5776473	0.04945481	1.5776473	320.04407	0	10.032501						228	4	3	NaN	NaN	NaN	0.02781	1	11379	11379		61.977	11.944	1	32855			6947	810	3999	4089	5554	5554					0.08085272285279643
FYIPSTILL	9	Unmodified	_FYIPSTILL_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.618310265	1	1066.61831	1065.61103	1.0123	0.0010798	0.11583	0.00012355	1.1282	0.0012033	1066.6181878792975	35.987	0.12062	35.988	35.94	36.06	0.0011024	63	85	1.5811787	0.049460053	1.5796592	320.76044	0	10.033539						250	6	3	NaN	NaN	NaN	0.0088919	1	11116	11116		94.648	38.7	1	30103			6948	810	3999	4089	5555	5555					0.08085272285279643
FYITFAKGCI	10	Unmodified	_FYITFAKGCI_					0	0	0		ZNF267-GPR180|1|fusion;ENSG00000152749|ENST00000376958|GPR180	ZNF267-GPR180|1|fusion	ZNF267-GPR180|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8019027160001	2	581.801903	1161.58925	1.4825	0.00086253	-10.389	-0.0060446	-8.9068	-0.005182	581.7953174562645	21.802	0.096258	21.788	21.764	21.86	-0.013895	1203	55	0.8965218	0.033100247	0.89500237	363.35162	0	13.415192						96	5	2	NaN	NaN	NaN	0.22448	1	14691	14691		33.425	7.6244	1	22554			6949	3785	4000	4090	5556	5556					0.014921442650575045
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7982059341	2	581.798206	1161.58186	1.9764	0.0011499	-4.5416	-0.0026423	-2.5652	-0.0014924	581.7957253690391	21.802	0.12036	21.802	21.754	21.874	0	1200	43	0.89836043	0.025741875	0.89836043	364.0968	0	10.432922						107	6	2	NaN	NaN	NaN	0.27608	1	15207	15207		20.449	0	1	22424			6950	5682	4001	4091	5557	5557					0.007531279889917641
FYIWRPLRI	9	Unmodified	_FYIWRPLRI_					0	0	0		TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.37167543845	2	632.371675	1262.7288	1.6068	0.0010161	-6.0977	-0.003856	-4.4909	-0.0028399	632.3675654819416	26.625	0.12068	26.625	26.601	26.722	0	1095	31	0.9625867	0.018315732	0.9625867	389.76016	0	7.4162292						109	6	3	NaN	NaN	NaN	0.27442	1	18067	18067		20.555	9.3851	1	10544			6951	5952	4002	4092	5558	5558					0.1079426966457504
FYIWRPLRI	9	Unmodified	_FYIWRPLRI_					0	0	0		TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.9168757811666	3	421.916876	1262.7288	1.4518	0.00061253	-2.4551	-0.0010359	-1.0034	-0.00042334	421.91583951090246	26.625	0.14482	26.625	26.601	26.746	0	1383	37	0.7858409	0.022208154	0.7858409	477.28714	0	13.488312						162	7	4	NaN	NaN	NaN	0.17818	1	18068	18068		17.97	10.287	1	19441			6952	5952	4002	4092	5559	5559					0.1079426966457504
FYIWRPLRI	9	Unmodified	_FYIWRPLRI_					0	0	0		TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59;nc|ENSG00000068885|Q9P2H3-3|IFT80	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.9168757811666	3	421.916876	1262.7288	1.1044	0.00046598	-1.5529	-0.0006552	-0.44847	-0.00018922	421.9163680765651	27.301	0.12063	27.291	27.242	27.363	-0.010126	1374	37	0.791392	0.022200942	0.7898726	480.65866	0	13.483917						83	6	2	NaN	NaN	NaN	0.47587	1	17279	17279		6.4299	1.8125	1	6040.5			6953	5952	4002	4092	5560	5560					0.1079426966457504
FYIYEFPL	8	Unmodified	_FYIYEFPL_					0	0	0			REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2760437187501	2	546.276044	1090.53753	1.4837	0.0008105	-6.5937	-0.003602	-5.11	-0.0027915	546.2722447814377	20.14	0.09635	20.126	20.102	20.198	-0.014141	1236	76	0.876284	0.046049654	0.8747646	355.4208	0	18.677734						177	5	3	NaN	NaN	NaN	0.72043	1	12114	12114		17.78	0	1	17063	+		6954	8810	4003	4093	5561	5561					-0.0041127615718323796
FYIYEFPL	8	Unmodified						0	0	0			REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.276044	1090.53753	1.4363	0.0007846	-2.8674	-0.0015664	-1.4311	-0.00078177	546.7758555862049	20.117	0.048029	20.117	20.117	20.165	0	1230	82	0.8799654	0.04973364	0.8799654	356.91397		20.171967	-0.0047203	0.0020709	0.0026004	NaN	17.78	102	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12618	+		6955	8810	4003	4093							-0.0041127615718323796
FYIYEFPL	8	Unmodified						0	0	0			REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.276044	1090.53753	1.4837	0.0008105	-6.5937	-0.003602	-5.11	-0.0027915	546.2722447814377	20.14	0.09635	20.126	20.102	20.198	-0.014141	1236	76	0.876284	0.046049654	0.8747646	355.4208		18.677734	0.0047203	-0.0020003	-0.0026004	NaN	17.78	177	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17063	+		6956	8810	4003	4093							-0.0041127615718323796
FYKLLRDYEPQ	11	Unmodified	_FYKLLRDYEPQ_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.38263405525	2	736.382634	1470.75072	1.5862	0.0011681	-8.2167	-0.0060506	-6.6305	-0.0048826	736.8783699732384	25.202	0.072386	25.202	25.178	25.25	0	1014	58	1.0119673	0.034708202	1.0119673	409.12732	0	14.032135						145	4	3	NaN	NaN	NaN	0.7072	1	20472	20472		6.9844	0	1	11663			6957	3881	4004	4094	5562	5562					0.03416984831847003
FYKMKHRM	8	Unmodified	_FYKMKHRM_					0	0	0			REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7938891061501	2	570.793889	1139.57323	1.8722	0.0010686	0.44454	0.00025374	2.3167	0.0013224	570.7939790629207	28.17	0.072382	28.17	28.122	28.194	0	1047	94	0.99186665	0.05665356	0.99186665	402.08502	0	22.96634						120	4	2	NaN	NaN	NaN	0.84887	1	14432	14432		0.32989	0.099748	1	10490	+		6958	12452	4005	4095	5563	5563					0.009021595471722321
FYKMKHRM	8	Unmodified						0	0	0			REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.793889	1139.57323	1.8722	0.0010686	0.44454	0.00025374	2.3167	0.0013224	570.7939790629207	28.17	0.072382	28.17	28.122	28.194	0	1047	94	0.99186665	0.05665356	0.99186665	402.08502		22.96634	-0.007189	-0.00014139	0.0025883	NaN	0.32989	120	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10490	+		6959	12452	4005	4095							0.009021595471722321
FYKMKHRM	8	Unmodified						0	0	0			REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.793889	1139.57323	1.0303	0.0005881	0.69487	0.00039662	1.7252	0.00098473	570.7940312832634	28.194	0.09656	28.185	28.161	28.257	-0.0089779	1053	88	0.9882094	0.053004205	0.98669	400.60245		21.486938	0.007189	0.00014437	-0.0025883	NaN	0.32989	130	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8085.2	+		6960	12452	4005	4095							0.009021595471722321
FYLDQVALSW	10	Unmodified	_FYLDQVALSW_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.3136888228	2	621.313689	1240.61282	1.1327	0.00070379	0.59006	0.00036661	1.7228	0.0010704	621.3149003893184	34.758	0.16882	34.758	34.686	34.855	0	1164	55	0.9204082	0.033046663	0.9204082	372.75354	0	13.383484						239	8	4	NaN	NaN	NaN	0.41164	1	17547	17547		23.118	8.2636	1	27392			6961	3358	4006	4096	5564	5564					0.002142813032378399
FYLDTVSALNF	11	Unmodified	_FYLDTVSALNF_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810954-29811370:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.3242535091001	2	645.324254	1288.63395	1.0749	0.00069365	-3.1225	-0.002015	-2.0476	-0.0013213	645.3228792814173	33.866	0.12068	33.866	33.817	33.938	0	1125	40	0.9442611	0.023837447	0.9442611	382.2568	0	9.649902						105	6	3	NaN	NaN	NaN	0.48069	1	18569	18569		19.164	12.033	1	11815			6962	897	4007	4097	5565	5565					0.0011824661210084741
FYLDTVSALNF	11	Unmodified	_FYLDTVSALNF_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810954-29811370:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3242535091001	2	645.324254	1288.63395	1.3154	0.00084889	-3.4477	-0.0022249	-2.1322	-0.001376	645.3231511294368	33.889	0.12064	33.887	33.839	33.96	-0.0012474	1122	40	0.9460945	0.023837447	0.9445751	382.99902	0	9.649902						97	6	2	NaN	NaN	NaN	0.59385	1	17741	17741		14.425	7.8076	1	11847			6963	897	4007	4097	5566	5566					0.0011824661210084741
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7951319289001	2	597.795132	1193.57571	2.1375	0.0012778	-3.5783	-0.0021391	-1.4409	-0.00086133	597.790906432642	26.456	0.16895	26.456	26.432	26.601	0	1164	121	0.9204082	0.073468864	0.9204082	372.9152	0	29.766846						542	8	6	NaN	NaN	NaN	0.0037187	1	16258	16258		80.241	33.2	1	912420			6964	3212	4008	4098	5567	5567					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7951319289001	2	597.795132	1193.57571	0.70107	0.0004191	-1.413	-0.00084468	-0.71192	-0.00042558	597.7931485638928	27.494	0.096535	27.484	27.388	27.484	-0.009552	1173	49	0.91489893	0.029387534	0.9133795	370.683	0	11.906738						104	5	2	NaN	NaN	NaN	0.10101	1	15632	15632		45.827	25.271	1	28021			6965	3212	4008	4098	5568	5568					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7951319289001	2	597.795132	1193.57571	0.72907	0.00043583	-0.80316	-0.00048013	-0.074095	-4.4293E-05	597.7946085643707	27.349	0.072405	27.339	27.315	27.387	-0.010126	1164	52	0.9204082	0.031205654	0.91888875	372.91516	0	12.643402						70	4	2	NaN	NaN	NaN	0.10101	1	15633	15633		45.827	22.492	1	15846			6966	3212	4008	4098	5569	5569					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7951319289001	2	597.795132	1193.57571	1.7406	0.0010405	-1.7715	-0.001059	-0.030873	-1.8455E-05	597.7930515250913	26.48	0.24129	26.47	26.421	26.663	-0.010645	1164	85	0.9204082	0.05139488	0.91888875	372.91516	0	20.823303						587	11	6	NaN	NaN	NaN	0.0051241	1	15634	15634		77.516	51.401	1	838600			6967	3212	4008	4098	5570	5570					-0.013333902425074484
FYLERKFAC	9	Unmodified	_FYLERKFAC_					0	0	0			REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.7971516891001	2	588.797152	1175.57975	1.5187	0.00089421	3.5132	0.0020685	5.0319	0.0029628	588.7998820713385	23.73	0.09638	23.717	23.693	23.789	-0.013048	1038	85	0.997351	0.05114621	0.9958316	404.16022	0	20.726166						164	5	2	NaN	NaN	NaN	0.67989	1	15093	15093		0.92586	0.40982	1	17344	+		6968	12301	4009	4099	5571	5571					-0.0010162402045352792
FYLERKFAC	9	Unmodified						0	0	0			REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	588.797152	1175.57975	1.7529	0.0010321	3.6447	0.002146	5.3976	0.0031781	588.7992564504956	23.706	0.072287	23.706	23.682	23.754	0	1038	94	0.997351	0.05662924	0.997351	404.16022		22.94806	-0.0053725	6.4728E-05	0.00075972	NaN	0.92586	146	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15782	+		6969	12301	4009	4099							-0.0010162402045352792
FYLERKFAC	9	Unmodified						0	0	0			REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	588.797152	1175.57975	1.5187	0.00089421	3.5132	0.0020685	5.0319	0.0029628	588.7998820713385	23.73	0.09638	23.717	23.693	23.789	-0.013048	1038	85	0.997351	0.05114621	0.9958316	404.16022		20.726166	0.0053725	-9.0208E-05	-0.00075972	NaN	0.92586	164	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17344	+		6970	12301	4009	4099							-0.0010162402045352792
FYLFPNRLEW	10	Unmodified	_FYLFPNRLEW_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8560551639999	2	692.856055	1383.69756	0.91449	0.00063361	-3.3106	-0.0022938	-2.3961	-0.0016602	692.8535445876905	31.525	0.16899	31.525	31.501	31.67	0	1086	82	0.9680805	0.04944992	0.9680805	391.61374	0	20.003754						329	8	4	NaN	NaN	NaN	0.047882	1	19925	19925		53.14	32.627	1	47825			6971	4867	4010	4100	5572	5572					0.021056518398154367
FYLFPNRLEW	10	Unmodified	_FYLFPNRLEW_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8560551639999	2	692.856055	1383.69756	0.48048	0.0003329	-5.286	-0.0036625	-4.8055	-0.0033295	692.8519504820972	31.572	0.21721	31.568	31.519	31.737	-0.0044155	1083	94	0.9699114	0.05675745	0.96839195	392.35437	0	22.95987						458	10	5	NaN	NaN	NaN	0.011581	1	18993	18993		69.233	43.432	1	51280			6972	4867	4010	4100	5573	5573					0.021056518398154367
FYLFQERVKL	10	Unmodified	_FYLFQERVKL_					0	0	0		ENST00000393445.7_1_2:100017150-100017303:-|nuORF	ENST00000393445.7_1_2:100017150-100017303:-|nuORF	ENST00000393445.7_1_2:100017150-100017303:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.2554456624	3	448.255446	1341.74451	1.291	0.00057872	-9.9896	-0.0044779	-8.6986	-0.0038992	448.2511223387193	21.2	0.096338	21.186	21.162	21.258	-0.014004	1398	31	0.77658504	0.018514812	0.7750656	471.3654	0	11.237976						84	5	3	NaN	NaN	NaN	0.66796	1	18575	18575		10.244	0.67325	1	5623.3			6973	6767	4011	4101	5574	5574					0.08730511390990614
FYLGSFDSI	9	Unmodified	_FYLGSFDSI_					0	0	0		ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.4985890598	1	1048.49859	1047.49131	0.788	0.00082622	0.61857	0.00064857	1.4066	0.0014748	1048.49979335781	31.669	0.12066	31.664	31.616	31.737	-0.0044155	210	82	1.4944444	0.047888756	1.4929249	303.23242	0	9.716919						154	6	3	NaN	NaN	NaN	0.0072287	1	10308	10308		98.041	29.933	1	13295			6974	2217	4012	4102	5575	5575					-0.030533410592852306
FYLGSFDSI	9	Unmodified						0	0	0		ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1048.49859	1047.49131	1.3832	0.0014503	0.19912	0.00020878	1.5823	0.0016591	1048.4987209201936	31.67	0.096558	31.67	31.646	31.742	0	213	61	1.4926696	0.035490036	1.4926696	302.8723		7.2011414	0.0027533	-0.0001586	-0.00012767	NaN	98.041	147	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14390			6975	2217	4012	4102							-0.030533410592852306
FYLHTSFSRP	10	Unmodified	_FYLHTSFSRP_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.8169300035	2	627.81693	1253.61931	1.9259	0.0012091	-3.074	-0.0019299	-1.1481	-0.00072081	627.8147008222712	25.515	0.072376	25.515	25.491	25.564	0	1110	88	0.95342636	0.05318737	0.95342636	386.0814	0	21.53772						176	4	4	NaN	NaN	NaN	0.5917	1	17871	17871		15.463	1.0377	1	20480			6976	3001	4013	4103	5576	5576					0.0026421925460908824
FYLHTSFSRP	10	Unmodified						0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.81693	1253.61931	1.6453	0.001033	-4.3506	-0.0027314	-2.7053	-0.0016984	627.8156920883655	25.539	0.12066	25.528	25.431	25.552	-0.0116	1116	82	0.94976085	0.04951924	0.9482414	384.59708		20.052368	0.0061198	-0.0010197	-0.0025925	NaN	15.463	191	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21327			6977	3001	4013	4103							0.0026421925460908824
FYLKALDGF	9	Unmodified	_FYLKALDGF_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.28694275605	2	537.286943	1072.55933	0.88125	0.00047348	0.50834	0.00027312	1.3896	0.00074661	537.2873724423171	28.145	0.14485	28.137	28.088	28.233	-0.0089798	1221	82	0.885486	0.049701393	0.88396657	359.2282	0	20.163086						235	7	4	NaN	NaN	NaN	0.059222	1	11371	11371		42.995	10.542	1	40385			6978	1267	4014	4104	5577	5577					0.0259552859138239
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1110.5829873911998	1	1110.58299	1109.57571	1.4936	0.0016588	-4.2031	-0.0046679	-2.7094	-0.0030091	1110.5765447143626	32.756	0.048275	32.756	32.732	32.78	0	63	55	1.5811787	0.03178227	1.5811787	320.59796	0	6.444153						83	3	3	NaN	NaN	NaN	0.31737	1	13259	13259		17.799	6.2505	1	7967.1			6979	654	4015	4105	5578	5578					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7951319289	2	555.795132	1109.57571	1.0454	0.00058105	-1.9281	-0.0010716	-0.88266	-0.00049058	555.7942945439084	32.756	0.21718	32.756	32.707	32.925	0	1179	70	0.9112251	0.042274177	0.9112251	369.51373	0	17.142761						286	10	4	NaN	NaN	NaN	0.089764	1	13261	13261		37.302	15.176	1	47227			6980	654	4015	4105	5579	5579					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.5829873911998	1	1110.58299	1109.57571	1.2867	0.001429	-5.3352	-0.0059252	-4.0486	-0.0044963	1110.5788179238787	32.755	0.048279	32.752	32.727	32.776	-0.0031013	57	40	1.5847093	0.022945404	1.5831898	321.3138	0	4.6523743						46	3	2	NaN	NaN	NaN	0.12945	1	12883	12883		31.561	17.519	1	4293			6981	654	4015	4105	5580	5580					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7951319289	2	555.795132	1109.57571	1.0074	0.0005599	-2.1728	-0.0012076	-1.1654	-0.00064772	555.7946250024064	32.755	0.14481	32.752	32.679	32.824	-0.0031013	1176	127	0.9130621	0.077259004	0.91154265	370.25867	0	31.32956						275	7	4	NaN	NaN	NaN	0.20577	1	12885	12885		24.961	8.3769	1	47237			6982	654	4015	4105	5581	5581					0.025306097574684827
FYLLTNYY	8	Unmodified	_FYLLTNYY_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.77112551635	2	548.771126	1095.5277	0.94918	0.00052088	2.6564	0.0014578	3.6056	0.0019786	548.7728108805746	35.818	0.14454	35.819	35.794	35.939	0.00052643	1212	100	0.8910048	0.060706794	0.88948536	361.37097	0	24.621277						321	7	3	NaN	NaN	NaN	0.83211	1	12320	12320		4.9097	0.49665	1	33447			6983	13878	4016	4106	5582	5582					-0.016244641625689837
FYLLWRWLMFT	11	Unmodified	_FYLLWRWLMFT_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|125|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4126829734	2	788.412683	1574.81081	1.2402	0.00097775	-6.0834	-0.0047962	-4.8432	-0.0038185	788.4095516219954	33.045	0.096561	33.045	32.997	33.094	0	930	46	1.0630256	0.027312875	1.0630256	429.5048	0	11.035522						176	5	4	NaN	NaN	NaN	0.74155	1	20726	20726		4.7291	0.80096	1	17529	+		6984	13374	4017	4107	5583	5583					0.04640003961367256
FYLMQIVEI	9	Unmodified	_FYLMQIVEI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3095605726	2	578.309561	1154.60457	1.2747	0.00073718	-1.4346	-0.00082966	-0.15991	-9.248E-05	578.3090296160943	37.314	0.21637	37.314	37.265	37.482	0	1191	58	0.90387505	0.034918368	0.90387505	366.35776	0	14.153107						323	10	3	NaN	NaN	NaN	0.056143	1	14978	14978		44.302	13.511	1	69419			6985	3126	4018	4108	5584	5584					0.0334501106224252
FYLMQIVEI	9	Unmodified	_FYLMQIVEI_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3095605726	2	578.309561	1154.60457	0.99014	0.00057261	-1.1319	-0.00065457	-0.14173	-8.1963E-05	578.3091725206195	37.311	0.21658	37.313	37.265	37.482	0.0022469	1191	52	0.90387505	0.031242788	0.9023556	366.35776	0	12.663269						286	10	3	NaN	NaN	NaN	0.030391	1	14483	14483		58.599	5.2754	1	47446			6986	3126	4018	4108	5585	5585					0.0334501106224252
FYLNQSTAYHF	11	Unmodified	_FYLNQSTAYHF_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.82495200085	2	695.824952	1389.63535	0.97741	0.00068011	-3.4071	-0.0023708	-2.4297	-0.0016907	695.8225327103395	24.357	0.09651	24.357	24.333	24.43	0	1065	52	0.9808926	0.031098247	0.9808926	396.77975	0	12.579529						145	5	4	NaN	NaN	NaN	0.03165	1	19978	19978		55.592	35.078	1	12463			6987	2752	4019	4109	5586	5586					-0.04388119299164828
FYLPDFYFGKF	11	Unmodified	_FYLPDFYFGKF_					0	0	0		ENST00000278612.8_1_11:108068056-108093342:-|nuORF	ENST00000278612.8_1_11:108068056-108093342:-|nuORF	ENST00000278612.8_1_11:108068056-108093342:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3528139832998	2	722.352814	1442.69108	0.6288	0.00045421	-2.4104	-0.0017412	-1.7816	-0.001287	722.350823743282	33.817	0.096519	33.817	33.793	33.89	0	1038	31	0.997351	0.018276393	0.997351	403.29114	0	7.390259						56	5	2	NaN	NaN	NaN	0.53563	1	20336	20336		17.198	3.1568	1	4609.5			6988	6356	4020	4110	5587	5587					-0.012562861115839041
FYLPGFVKF	9	Unmodified	_FYLPGFVKF_					0	0	0		ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	ENST00000373903.1_1_9:123586619-123589169:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.30767819815	2	559.307678	1116.6008	0.68144	0.00038113	-0.88141	-0.00049298	-0.19998	-0.00011185	559.3066842659788	31.284	0.096527	31.284	31.259	31.356	0	1203	40	0.8965218	0.023904443	0.8965218	363.52332	0	9.69281						125	5	3	NaN	NaN	NaN	0.056143	1	13546	13546		44.302	23.747	1	16241			6989	1121	4021	4111	5588	5588					0.04716709350691417
FYLPLDAIKQL	11	Unmodified	_FYLPLDAIKQL_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.88173859825	2	660.881739	1319.74892	1.1193	0.00073975	-2.4784	-0.0016379	-1.3591	-0.00089819	660.8802231363798	32.249	0.12062	32.249	32.201	32.321	0	1065	73	0.9808926	0.043929398	0.9808926	396.9867	0	17.779114						166	6	4	NaN	NaN	NaN	0.017009	1	19112	19112		63.995	47.578	1	23119			6990	6164	4022	4112	5589	5589					0.10183975813879442
FYLPLDAIKQL	11	Unmodified	_FYLPLDAIKQL_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.88173859825	2	660.881739	1319.74892	1.0181	0.00067283	-2.5255	-0.001669	-1.5074	-0.0009962	660.8797958401566	32.248	0.12069	32.244	32.22	32.341	-0.0037613	1062	73	0.9827221	0.043929398	0.98120266	397.72714	0	17.779114						200	6	4	NaN	NaN	NaN	0.0002439	1	18257	18257		80.442	55.88	1	25394			6991	6164	4022	4112	5590	5590					0.10183975813879442
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5302235391998	1	1037.53022	1036.52295	1.6945	0.0017581	-1.2858	-0.001334	0.40873	0.00042407	1037.5294863106674	27.977	0.072382	27.977	27.929	28.001	0	138	88	1.5369828	0.0513705	1.5369828	311.90665	0	10.424866						120	4	2	NaN	NaN	NaN	0.030669	1	10064	10064		58.235	22.001	1	11602			6992	5844	4023	4113	5591	5591					0.006146516946500924
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5302235391998	1	1037.53022	1036.52295	1.19	0.0012346	-1.1901	-0.0012347	-0.00010502	-1.0896E-07	1037.5273996108294	27.977	0.072388	27.968	27.919	27.992	-0.0089798	132	58	1.5405227	0.033638716	1.5390033	312.62503	0	6.8264465						87	4	2	NaN	NaN	NaN	0.25448	1	9854	9854		21.835	2.5503	1	8149.5			6993	5844	4023	4113	5592	5592					0.006146516946500924
FYLPVHRWC	9	Unmodified	_FYLPVHRWC_					0	0	0			REV__ENST00000394833.6_1_4:103184333-103188761:-|nuORF	REV__ENST00000394833.6_1_4:103184333-103188761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.53929953700003	3	407.5393	1219.59607	1.453	0.00059215	-6.2492	-0.0025468	-4.7962	-0.0019547	407.53647212264724	23.995	0.024109	23.995	23.995	24.019	0	1497	31	0.71537006	0.018581212	0.71537006	434.652	0	11.289764						32	2	2	NaN	NaN	NaN	0.67818	1	16971	16971		0.44583	0	1	2568	+		6994	12002	4024	4114	5593	5593					-0.004944980636992113
FYLRPPSFL	9	Unmodified	_FYLRPPSFL_					0	0	0		ENSG00000109846|ENST00000650687|CRYAB	ENSG00000109846|ENST00000650687|CRYAB	ENSG00000109846|ENST00000650687|CRYAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3160345465001	2	570.316035	1138.61752	2.0241	0.0011544	-10.919	-0.0062273	-8.8949	-0.0050729	570.3094458238022	27.422	0.4103	27.422	27.229	27.639	0	1203	115	0.8965218	0.06982553	0.8965218	363.43762	0	28.306305						1135	18	5	NaN	NaN	NaN	0.18779	1	14408	14408		26.115	1.7147	1	488700			6995	1736	4025	4115	5594	5594					0.05375210236661587
FYLSGDSFI	9	Unmodified	_FYLSGDSFI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|195|2|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|195|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4985890598	1	1048.49859	1047.49131	1.3832	0.0014503	0.19912	0.00020878	1.5823	0.0016591	1048.4987209201936	31.67	0.096558	31.67	31.646	31.742	0	213	61	1.4926696	0.035490036	1.4926696	302.8723	0	7.2011414						147	5	3	NaN	NaN	NaN	0.020004	1	10518	10518		71.993	3.8845	1	14390	+		6996	13046	4026	4116	5595	5595					-0.030533410592852306
FYLSTPFL	8	Unmodified	_FYLSTPFL_					0	0	0			REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF	REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.2629363434999	2	494.262936	986.51132	0.9263	0.00045783	-2.3821	-0.0011774	-1.4558	-0.00071957	494.2618678314027	20.405	0.12051	20.391	20.343	20.463	-0.014141	1326	85	0.8209676	0.05166769	0.81944823	333.42218	0	20.983978						135	6	2	NaN	NaN	NaN	0.80071	1	7934	7934		9.1232	0	1	14743	+		6997	11713	4027	4117	5596	5596					0.017524546713161726
FYLSTPFL	8	Unmodified						0	0	0			REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF	REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.262936	986.51132	0.9263	0.00045783	-2.3821	-0.0011774	-1.4558	-0.00071957	494.2618678314027	20.405	0.12051	20.391	20.343	20.463	-0.014141	1326	85	0.8209676	0.05166769	0.81944823	333.42218		20.983978	0.0049645	0.00098687	-0.00075972	NaN	9.1232	135	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14743	+		6998	11713	4027	4117							0.017524546713161726
FYLYFIIYENT	11	Unmodified	_FYLYFIIYENT_					0	0	0			REV__ENST00000231512.4_1_5:133292374-133292449:-|nuORF	REV__ENST00000231512.4_1_5:133292374-133292449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.9148661640334	3	495.914866	1484.72277	1.9521	0.00096808	2.9096	0.0014429	4.8618	0.002411	496.24996547694315	22.935	0.072298	22.935	22.911	22.983	0	1302	37	0.8357362	0.022143304	0.8357362	506.7708	0	13.427185						78	4	3	NaN	NaN	NaN	0.66717	1	20528	20528		6.8076	0	1	8673.7	+		6999	11482	4028	4118	5597	5597					-0.0002033814821515989
FYMDTSHLF	9	Unmodified	_FYMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7576921776	2	580.757692	1159.50083	2.0635	0.0011984	-0.89319	-0.00051873	1.1703	0.00067965	580.7573919182261	27.688	0.21717	27.688	27.639	27.857	0	1197	82	0.9001988	0.049631655	0.9001988	364.84955	0	20.115631						442	10	3	NaN	NaN	NaN	0.023074	1	15111	15111		68.108	41.377	1	195410			7000	2147	4029	4119	5598	5598					-0.072538960454267
FYMDTSHLF	9	Unmodified	_FYMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7576921776	2	580.757692	1159.50083	1.5129	0.00087864	-1.4446	-0.00083899	0.068275	3.9651E-05	580.7567991166303	27.711	0.33786	27.702	27.605	27.943	-0.009552	1197	85	0.9001988	0.051472604	0.8986794	364.84955	0	20.861786						498	15	3	NaN	NaN	NaN	0.021105	1	14605	14605		70.6	45.639	1	203790			7001	2147	4029	4119	5599	5599					-0.072538960454267
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(77)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.75514948865	2	588.755149	1175.49575	2.1867	0.0012874	-1.5532	-0.00091447	0.6335	0.00037298	588.7546785114483	23.562	0.24095	23.562	23.513	23.754	0	1200	82	0.89836043	0.049658418	0.89836043	364.0462	0	20.123291						748	11	6	NaN	NaN	NaN	0.016254	1	15649	15649		76.739	54.904	1	261130			7002	2147	4029	4120	5600	5600		247			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(120)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.75514948865	2	588.755149	1175.49575	1.966	0.0011575	-0.76349	-0.00044951	1.2025	0.00070799	588.7551749801038	23.585	0.24103	23.572	23.548	23.789	-0.013048	1200	79	0.89836043	0.04781151	0.896841	364.0462	0	19.374847						537	11	6	NaN	NaN	NaN	0.00010594	1	15084	15084		122.55	82.396	1	235030			7003	2147	4029	4120	5601	5601		247			-0.08498199908035531
FYNDDIFNF	9	Unmodified	_FYNDDIFNF_					0	0	0		nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	nc|ENSG00000105948|A0AVF1-2|IFT56	nc|ENSG00000105948|A0AVF1-2|IFT56	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7587464226	2	597.758746	1193.50294	1.0836	0.00064775	-9.4787	-0.005666	-8.395	-0.0050182	598.2546904346059	32.78	0.24132	32.78	32.707	32.949	0	1197	82	0.9001988	0.049653053	0.9001988	364.7274	0	20.117584						597	11	5	NaN	NaN	NaN	0.40649	1	16242	16242		13.463	4.5011	1	84734			7004	1577	4030	4121	5602	5602					-0.08607144035954661
FYNDDIFNF	9	Unmodified						0	0	0		nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	nc|ENSG00000105948|A0AVF1-2|IFT56	nc|ENSG00000105948|A0AVF1-2|IFT56	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.758746	1193.50294	0.7601	0.00045435	-7.9169	-0.0047324	-7.1568	-0.004278	598.2555594870782	32.779	0.21714	32.776	32.727	32.945	-0.0031052	1197	82	0.9001988	0.049653053	0.8986794	364.72736		20.117584	-0.0020824	0.00092575	-0.00075972	NaN	13.463	557	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79068			7005	1577	4030	4121							-0.08607144035954661
FYNGSKPPYRY	11	Unmodified	_FYNGSKPPYRY_					0	0	0			REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.56293831589994	3	464.562938	1390.66699	1.1614	0.00053953	3.2813	0.0015243	4.4426	0.0020639	464.56426889599265	22.525	0.072268	22.525	22.477	22.549	0	1395	46	0.7784366	0.027767718	0.7784366	472.31995	0	16.848175						66	4	2	NaN	NaN	NaN	0.77797	1	19990	19990		0.1369	0.018989	1	6469.7	+		7006	8893	4031	4122	5603	5603					-0.012721265452000807
FYNKQPVNFLE	11	Unmodified	_FYNKQPVNFLE_					0	0	0		tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.85625212925	2	699.856252	1397.69795	0.7434	0.00052027	-9.7459	-0.0068207	-9.0025	-0.0063005	700.3500549169894	30.897	0.048235	30.897	30.897	30.946	0	1062	37	0.9827221	0.021957576	0.9827221	397.49725	0	8.881531						42	3	2	NaN	NaN	NaN	0.74155	1	20052	20052		4.7291	0.41892	1	2633.6			7007	13786	4032	4123	5604	5604					0.015010267690286128
FYNLLTRTF	9	Unmodified	_FYNLLTRTF_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8163986872501	2	587.816399	1173.61824	1.8057	0.0010614	-3.0792	-0.00181	-1.2735	-0.00074859	587.8144519542593	27.398	0.33792	27.398	27.302	27.639	0	1161	91	0.9222442	0.055095673	0.9222442	373.73166	0	22.327057						521	15	5	NaN	NaN	NaN	0.013093	1	15609	15609		83.529	54.633	1	170320			7008	2397	4033	4124	5605	5605					0.038380048857106885
FYNLLTRTF	9	Unmodified	_FYNLLTRTF_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8163986872501	2	587.816399	1173.61824	1.2528	0.00073644	-2.1334	-0.0012541	-0.88059	-0.00051762	587.8149352508416	27.422	0.26546	27.411	27.339	27.604	-0.010126	1161	94	0.9222442	0.05693525	0.92072475	373.73166	0	23.07254						442	12	4	NaN	NaN	NaN	0.002766	1	15055	15055		108.71	60.709	1	163940			7009	2397	4033	4124	5606	5606					0.038380048857106885
FYNNFVNLPL	10	Unmodified	_FYNNFVNLPL_					0	0	0			REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.8216810304001	2	620.821681	1239.62881	0.76407	0.00047435	-5.1301	-0.0031848	-4.366	-0.0027105	621.3179627139604	34.757	0.21691	34.756	34.587	34.804	-0.0006485	1164	64	0.9204082	0.038552344	0.91888875	372.7568	0	15.613373						233	10	2	NaN	NaN	NaN	0.67523	1	16777	16777		9.746	3.4958	1	35947	+		7010	8309	4034	4125	5607	5607					0.01857987540142858
FYNNVNACILF	11	Unmodified	_FYNNVNACILF_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3184482372	2	659.318448	1316.62234	1.0342	0.00068186	-7.3679	-0.0048578	-6.3337	-0.0041759	659.3140576340752	32.225	0.14479	32.225	32.201	32.345	0	1107	52	0.9552588	0.03115189	0.9552588	386.62173	0	12.608124						153	7	3	NaN	NaN	NaN	0.63005	1	19050	19050		12.049	0.87837	1	17958			7011	5240	4035	4126	5608	5608					-0.023302736829009518
FYNPFQFEI	9	Unmodified	_FYNPFQFEI_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7873068968	2	602.787307	1203.56006	0.76727	0.0004625	-0.64105	-0.00038642	0.12623	7.6088E-05	602.7870920909915	35.603	0.19292	35.603	35.506	35.699	0	1179	64	0.9112251	0.038573205	0.9112251	369.15952	0	15.626953						312	9	3	NaN	NaN	NaN	0.12328	1	16571	16571		32.453	18.411	1	36679			7012	1841	4036	4127	5609	5609					-0.03357676759583228
FYNPFQFEI	9	Unmodified	_FYNPFQFEI_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.7873068968	2	602.787307	1203.56006	0.3093	0.00018644	0.12758	7.6902E-05	0.43688	0.00026335	602.787139502933	35.601	0.16883	35.602	35.553	35.722	0.00053024	1167	64	0.91857195	0.038573205	0.9170525	372.1359	0	15.626923						301	8	3	NaN	NaN	NaN	0.11656	1	15921	15921		33.425	8.8633	1	31621			7013	1841	4036	4127	5610	5610					-0.03357676759583228
FYNPPRTL	8	Unmodified	_FYNPPRTL_					0	0	0			REV__nc|ENSG00000087263|Q8N543-2|OGFOD1	REV__nc|ENSG00000087263|Q8N543-2|OGFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.26908435390004	2	504.269084	1006.52362	1.9127	0.00096453	2.3019	0.0011608	4.2147	0.0021253	504.2703581719582	28.001	0.048241	28.001	27.977	28.026	0	1317	34	0.8265074	0.020307899	0.8265074	335.58023	0	8.245453						40	3	2	NaN	NaN	NaN	0.8439	1	8843	8843		3.1533	1.2287	1	3042	+		7014	8695	4037	4128	5611	5611					0.020614911343841413
FYNVVVENL	9	Unmodified	_FYNVVVENL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.567337327	1	1096.56734	1095.56006	1.6871	0.00185	-2.4045	-0.0026367	-0.71743	-0.00078671	1096.5642448526878	28.725	0.072407	28.716	28.668	28.74	-0.0083504	66	52	1.579413	0.030027747	1.5778936	320.2903	0	6.0893555						88	4	2	NaN	NaN	NaN	0.25548	1	12328	12328		21.771	10.601	1	6790			7015	3520	4038	4129	5612	5612					0.016103232404248047
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7736682052999	2	528.773668	1055.53278	1.3068	0.00069102	-1.2018	-0.0006355	0.10499	5.5518E-05	528.773083966653	36.061	0.096527	36.061	36.012	36.109	0	1263	43	0.85970795	0.025803149	0.85970795	348.84177	0	10.470062						100	5	3	NaN	NaN	NaN	0.22308	1	10890	10890		23.85	8.6751	1	9210.2			7016	3339	4039	4130	5613	5613					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5400599439997	1	1056.54006	1055.53278	1.9368	0.0020463	3.811	0.0040265	5.7478	0.0060728	1056.5437231147341	36.061	0.24112	36.061	35.94	36.181	0	111	118	1.5529068	0.06897485	1.5529068	315.0636	0	13.994049						507	11	3	NaN	NaN	NaN	0.032417	1	10893	10893		55.947	15.794	1	89304			7017	3339	4039	4130	5614	5614					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7736682052999	2	528.773668	1055.53278	1.1526	0.00060945	-3.0377	-0.0016062	-1.8851	-0.00099679	528.77217584504	36.059	0.072266	36.06	36.036	36.108	0.0011024	1263	37	0.85970795	0.022114575	0.8581885	348.84177	0	8.973389						68	4	2	NaN	NaN	NaN	0.48931	1	10663	10663		10.052	1.0896	1	6943.9			7018	3339	4039	4130	5615	5615					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4;JUP-LEPREL4|2|fusion	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5400599439997	1	1056.54006	1055.53278	1.678	0.0017728	6.6672	0.0070441	8.3451	0.008817	1056.5470548465883	36.059	0.26513	36.06	35.916	36.181	0.0011024	105	127	1.5564433	0.07426882	1.5549239	315.78113	0	15.068115						702	12	4	NaN	NaN	NaN	0.032417	1	10669	10669		55.947	14.163	1	120540			7019	3339	4039	4130	5616	5616					0.00723839700026474
FYPHAFNVKF	10	Unmodified	_FYPHAFNVKF_					0	0	0		nc|ENSG00000172409|Q92989-2|CLP1;ENSG00000172409|ENST00000533682|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	nc|ENSG00000172409|Q92989-2|CLP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.88535275209995	3	423.885353	1268.63423	1.862	0.00078926	-2.931	-0.0012424	-1.069	-0.00045315	423.88426637361925	23.031	0.072115	23.031	23.007	23.079	0	1458	43	0.7395112	0.02598548	0.7395112	449.12582	0	15.781708						73	4	2	NaN	NaN	NaN	0.76892	1	18203	18203		1.3696	0.93745	1	5358.7			7020	4836	4040	4131	5617	5617					0.010657111226009874
FYPPHPDYTW	10	Unmodified	_FYPPHPDYTW_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.79566324515	2	661.795663	1321.57677	1.4338	0.0009489	-0.47232	-0.00031258	0.96151	0.00063632	661.7954403251763	24.044	0.21707	24.044	23.899	24.116	0	1134	70	0.9387595	0.04218763	0.9387595	379.92917	0	17.073914						243	10	2	NaN	NaN	NaN	0.5917	1	19127	19127		15.463	7.1851	1	27836			7021	2636	4041	4132	5618	5618					-0.07115175873650514
FYPPHPDYTW	10	Unmodified	_FYPPHPDYTW_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.79566324515	2	661.795663	1321.57677	1.751	0.0011588	-2.7304	-0.001807	-0.97944	-0.00064819	661.793502175413	24.043	0.14478	24.031	23.934	24.079	-0.012749	1134	64	0.9387595	0.038519144	0.93724006	379.92917	0	15.589233						186	7	2	NaN	NaN	NaN	0.53991	1	18269	18269		17.799	8.837	1	23053			7022	2636	4041	4132	5619	5619					-0.07115175873650514
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.31041785235	2	570.310418	1138.60628	1.474	0.00084061	-0.53356	-0.0003043	0.9404	0.00053632	570.3098336772634	27.446	0.38613	27.436	27.267	27.653	-0.010126	1203	100	0.8965218	0.060654342	0.89500237	363.43762	0	24.58844						1158	17	5	NaN	NaN	NaN	0.059222	1	13938	13938		42.995	13.396	1	499490			7023	2556	4042	4133	5620	5620					0.0425238814250406
FYPSSAIPP	9	Unmodified	_FYPSSAIPP_					0	0	0		ENST00000557796.6_1_15:37391241-37391490:-|nuORF	ENST00000557796.6_1_15:37391241-37391490:-|nuORF	ENST00000557796.6_1_15:37391241-37391490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.750193109	2	489.750193	977.485833	1.595	0.00078113	-3.1197	-0.0015279	-1.5248	-0.00074676	489.74921704020164	21.272	0.072243	21.272	21.224	21.296	0	1344	55	0.8098828	0.033250928	0.8098828	328.96204	0	13.506012						71	4	2	NaN	NaN	NaN	0.24994	1	7816	7816		22.126	6.951	1	4713.3			7024	7579	4043	4134	5621	5621					-0.0038101985109051384
FYPTVTVVI	9	Unmodified	_FYPTVTVVI_					0	0	0		ENST00000553142.5_1_12:58021700-58025915:-|nuORF;nc|ENSG00000135454|Q00973-2|B4GALNT1;ENSG00000135454|ENST00000341156|B4GALNT1	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5870101366002	1	1038.58701	1037.57973	0.89146	0.00092586	-1.6417	-0.0017051	-0.75026	-0.00077921	1038.5853703468072	31.573	0.096575	31.573	31.525	31.621	0	150	88	1.5299006	0.05138147	1.5299006	310.46527	0	10.42691						153	5	2	NaN	NaN	NaN	0.02781	1	10111	10111		61.977	37.016	1	23695			7025	2945	4044	4135	5622	5622					0.062446992512150246
FYPTVTVVI	9	Unmodified	_FYPTVTVVI_					0	0	0		ENST00000553142.5_1_12:58021700-58025915:-|nuORF;nc|ENSG00000135454|Q00973-2|B4GALNT1;ENSG00000135454|ENST00000341156|B4GALNT1	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5870101366002	1	1038.58701	1037.57973	0.58397	0.0006065	-1.5285	-0.0015875	-0.94457	-0.00098102	1038.585515448141	31.548	0.1207	31.544	31.519	31.64	-0.0044174	147	82	1.5316714	0.047832847	1.530152	310.82462	0	9.706787						193	6	3	NaN	NaN	NaN	0.056143	1	9899	9899		44.302	19.341	1	23401			7026	2945	4044	4135	5623	5623					0.062446992512150246
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1135.5458736033997	1	1135.54587	1134.5386	2.6277	0.0029839	-1.7374	-0.0019729	0.89029	0.001011	1136.5469506726772	29.98	0.2172	29.98	29.836	30.053	0	66	76	1.579413	0.04415381	1.579413	320.15332	0	8.950165						275	10	2	NaN	NaN	NaN	0.0040938	1	14258	14258		104.71	65.252	1	54937			7027	1210	4045	4136	5624	5624					-0.02329061788304898
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.276575035	2	568.276575	1134.5386	1.064	0.00060465	-0.77628	-0.00044114	0.28772	0.0001635	568.2764566011505	29.931	0.24132	29.925	29.828	30.07	-0.0064087	1209	73	0.892844	0.044152796	0.8913246	361.96222	0	17.899689						532	11	3	NaN	NaN	NaN	0.10956	1	13796	13796		34.439	1.0135	1	107410			7028	1210	4045	4136	5625	5625					-0.02329061788304898
FYPYPQYFTQL	11	Unmodified	_FYPYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.85317812405	2	733.853178	1465.6918	1.1796	0.00086566	-1.2414	-0.00091101	-0.061788	-4.5343E-05	733.8520110428863	32.128	0.19304	32.128	32.08	32.273	0	1011	103	1.0137935	0.062119484	1.0137935	409.87875	0	25.11502						565	9	4	NaN	NaN	NaN	1.7568E-11	1	20454	20454		111.05	41.685	1	70136			7029	1417	4046	4137	5626	5626					-0.022414914624960147
FYPYPQYFTQL	11	Unmodified	_FYPYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.85317812405	2	733.853178	1465.6918	0.94524	0.00069367	-1.5487	-0.0011365	-0.60344	-0.00044283	733.852050225801	32.127	0.19306	32.123	32.075	32.268	-0.0037575	1011	112	1.0137935	0.067604244	1.012274	409.87875	0	27.33255						632	9	4	NaN	NaN	NaN	9.7936E-12	1	19468	19468		113.43	86.131	1	74983			7030	1417	4046	4137	5627	5627					-0.022414914624960147
FYQDTFGQQW	10	Unmodified	_FYQDTFGQQW_					0	0	0		ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;SNX14-SYNCRIP|1|fusion	ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000135316|ENST00000369622|SYNCRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.2882023538001	2	660.288202	1318.56185	1.2094	0.00079856	-1.6931	-0.001118	-0.48373	-0.0003194	660.2875139302621	26.867	0.16891	26.867	26.819	26.988	0	1110	76	0.95342636	0.045811653	0.95342636	385.87418	0	18.541046						249	8	3	NaN	NaN	NaN	0.15916	1	19087	19087		39.039	26.99	1	26361			7031	2929	4047	4138	5628	5628					-0.0846866774161299
FYQDTFGQQW	10	Unmodified	_FYQDTFGQQW_					0	0	0		ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;SNX14-SYNCRIP|1|fusion	ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000135316|ENST00000369622|SYNCRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.2882023538001	2	660.288202	1318.56185	1.2676	0.000837	-1.0399	-0.00068662	0.22775	0.00015038	660.2877075581827	26.842	0.19308	26.832	26.783	26.976	-0.010645	1104	73	0.9570911	0.043976784	0.95557165	387.35736	0	17.798462						331	9	4	NaN	NaN	NaN	0.28195	1	18238	18238		28.495	16.756	1	28818			7032	2929	4047	4138	5629	5629					-0.0846866774161299
FYQDTYGQQW	10	Unmodified	_FYQDTYGQQW_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.2856596648501	2	668.28566	1334.55677	1.6415	0.001097	-0.54321	-0.00036302	1.0983	0.00073399	668.2843285639856	23.754	0.19272	23.754	23.706	23.899	0	1125	73	0.9442611	0.043995738	0.9442611	382.11725	0	17.803894						257	9	4	NaN	NaN	NaN	0.71559	1	19318	19318		6.9844	1.7955	1	17046			7033	2485	4048	4139	5630	5630					-0.0971297160422182
FYQKEHWNYF	10	Unmodified	_FYQKEHWNYF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.8910549611667	3	487.891055	1460.65134	1.4771	0.00072065	-1.815	-0.00088551	-0.3379	-0.00016486	487.89033151124937	20.862	0.14455	20.862	20.838	20.983	0	1404	34	0.77288127	0.020371795	0.77288127	468.72827	0	12.354858						105	7	3	NaN	NaN	NaN	0.62092	1	20431	20431		7.8039	5.4544	1	8610			7034	5712	4049	4140	5631	5631					-0.06056413062242427
FYQKEHWNYF	10	Unmodified	_FYQKEHWNYF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.33294420845	2	731.332944	1460.65134	1.2383	0.00090559	0.077831	5.692E-05	1.3161	0.00096251	731.3325332030779	20.862	0.096447	20.862	20.838	20.935	0	1014	34	1.0119673	0.02009201	1.0119673	409.15363	0	8.123535						68	5	2	NaN	NaN	NaN	0.047882	1	20432	20432		53.14	32.692	1	4872.3			7035	5712	4049	4140	5632	5632					-0.06056413062242427
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8163986872501	2	599.816399	1197.61824	1.562	0.00093692	-3.5252	-0.0021145	-1.9632	-0.0011776	599.8143586752699	21.994	0.21697	21.994	21.922	22.139	0	1203	73	0.8965218	0.044105053	0.8965218	363.2233	0	17.86905						277	10	3	NaN	NaN	NaN	0.023828	1	16400	16400		67.154	46.599	1	52125			7036	130	4050	4141	5633	5633					0.027340048857013244
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8163986872501	2	599.816399	1197.61824	0.90964	0.00054562	-4.137	-0.0024814	-3.2273	-0.0019358	599.8120616474695	21.994	0.21678	21.98	21.932	22.149	-0.013897	1203	94	0.8965218	0.05694753	0.89500237	363.2233	0	23.072144						291	10	3	NaN	NaN	NaN	0.025843	1	15754	15754		64.55	25.632	1	54257			7037	130	4050	4141	5634	5634					0.027340048857013244
FYQQVKQLSE	10	Unmodified	_FYQQVKQLSE_					0	0	0		ENST00000557830.1_1_14:24710868-24711254:-|nuORF;nc|ENSG00000092330|Q9BSI4-3|TINF2;ENST00000559147.1_1_14:24710388-24711538:-|nuORF;nc|ENSG00000092330|Q9BSI4-2|TINF2;ENSG00000092330|ENST00000267415|TINF2	ENST00000557830.1_1_14:24710868-24711254:-|nuORF	ENST00000557830.1_1_14:24710868-24711254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.8873104984	3	423.88731	1268.6401	1.7534	0.00074324	-6.6853	-0.0028338	-4.9319	-0.0020906	423.8844057426721	23.175	0.096548	23.162	23.138	23.234	-0.013294	1455	40	0.7413668	0.024122834	0.73984736	450.25278	0	14.650452						72	5	2	NaN	NaN	NaN	0.71345	1	17391	17391		7.1304	4.0939	1	5140			7038	1094	4051	4142	5635	5635					0.016527648436067466
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000492581.5_1_22:21067427-21075805:-|nuORF;ENST00000466772.5_1_22:21065465-21081626:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.79566324515	2	649.795663	1297.57677	1.8674	0.0012134	-2.5033	-0.0016266	-0.63588	-0.00041319	649.7939623654311	28.267	0.14477	28.267	28.243	28.388	0	1131	94	0.94059354	0.056824803	0.94059354	380.74426	0	23.002197						238	7	2	NaN	NaN	NaN	0.08308	1	18728	18728		42.995	16.263	1	66688			7039	6074	4052	4143	5636	5636					-0.0601117587364115
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000492581.5_1_22:21067427-21075805:-|nuORF;ENST00000466772.5_1_22:21065465-21081626:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.79566324515	2	649.795663	1297.57677	1.0777	0.00070028	-1.413	-0.00091819	-0.33535	-0.00021791	649.794783484246	28.29	0.26545	28.281	28.209	28.474	-0.0089779	1131	79	0.94059354	0.04767233	0.93907416	380.74426	0	19.297363						408	12	4	NaN	NaN	NaN	0.10206	1	17891	17891		40.154	18.319	1	71567			7040	6074	4052	4143	5637	5637					-0.0601117587364115
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.8111163441	2	602.811116	1203.60768	1.5712	0.00094712	-0.93146	-0.00056149	0.63972	0.00038563	602.8104102703935	27.881	0.19302	27.881	27.857	28.05	0	1164	91	0.9204082	0.05505407	0.9204082	372.87964	0	22.303741						435	9	4	NaN	NaN	NaN	0.024221	1	16581	16581		66.656	32.202	1	81219			7041	2851	4053	4144	5638	5638					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.8111163441	2	602.811116	1203.60768	0.81391	0.00049063	-0.32228	-0.00019428	0.49163	0.00029636	602.8108120549431	27.928	0.19305	27.919	27.87	28.064	-0.009552	1164	82	0.9204082	0.04955131	0.91888875	372.87964	0	20.074432						387	9	3	NaN	NaN	NaN	0.011693	1	15928	15928		87.778	37.817	1	83996			7042	2851	4053	4144	5639	5639					0.014020222312637998
FYRSTAPS	8	Unmodified	_FYRSTAPS_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.72979201789997	2	464.729792	927.445031	1.3031	0.00060558	-3.1184	-0.0014492	-1.8153	-0.00084364	464.7282069216044	22.573	0.07238	22.573	22.549	22.621	0	1353	88	0.8043377	0.053602874	0.8043377	326.95413	0	21.78897						193	4	4	NaN	NaN	NaN	0.38377	1	6534	6534		37.302	1.266	1	56282			7043	2122	4054	4145	5640	5640					-0.02159361170720331
FYRSTAPS	8	Unmodified	_FYRSTAPS_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4523075692	1	928.452308	927.445031	2.5801	0.0023955	2.0445	0.0018982	4.6246	0.0042937	928.4542902866455	22.573	0.36185	22.573	22.573	22.935	0	303	274	1.4393384	0.16257405	1.4393384	292.54196	0	33.042786						974	16	4	NaN	NaN	NaN	0.65075	1	6537	6537		22.126	0.29135	1	485880			7044	2122	4054	4145	5641	5641					-0.02159361170720331
FYRSTAPS	8	Unmodified	_FYRSTAPS_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.72979201789997	2	464.729792	927.445031	0.56055	0.0002605	-1.8426	-0.0008563	-1.282	-0.0005958	464.7287369345062	22.621	0.072355	22.607	22.583	22.655	-0.01354	1356	67	0.8024889	0.04066646	0.8009695	326.2026	0	16.530457						127	4	2	NaN	NaN	NaN	0.69825	1	6406	6406		19.164	5.122	1	23637			7045	2122	4054	4145	5642	5642					-0.02159361170720331
FYRSYFSQF	9	Unmodified	_FYRSYFSQF_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.790380902	2	622.790381	1243.56621	1.1955	0.00074454	0.94965	0.00059143	2.1451	0.001336	623.2911783889849	24.309	0.12064	24.309	24.237	24.357	0	1140	82	0.93509084	0.04951924	0.93509084	378.68994	0	20.054138						233	6	3	NaN	NaN	NaN	0.057383	1	17615	17615		43.776	28.313	1	37579			7046	4611	4055	4146	5643	5643					-0.04583158528066633
FYRWRCPYTQV	11	Unmodified	_FYRWRCPYTQV_					0	0	0			REV__ENST00000301463.8_1_12:53469574-53470991:-|nuORF	REV__ENST00000301463.8_1_12:53469574-53470991:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.86917092675	2	759.869171	1517.72379	1.997	0.0015174	-6.0737	-0.0046152	-4.0767	-0.0030978	759.8646785112757	26.312	0.096544	26.312	26.288	26.384	0	966	61	1.0411623	0.03647411	1.0411623	420.80905	0	14.741821						170	5	3	NaN	NaN	NaN	0.64343	1	20640	20640		11.17	4.7404	1	15584	+		7047	11656	4056	4147	5644	5644					-0.01436402260333125
FYSFMIMKTN	10	Unmodified	_FYSFMIMKTN_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.8717269995	3	427.871727	1280.59335	1.1624	0.00049737	4.7036	0.0020126	5.8661	0.0025099	427.8738033682879	20.429	0.096134	20.429	20.429	20.525	0	1461	31	0.7376554	0.018557012	0.7376554	447.95374	0	11.2690735						65	5	2	NaN	NaN	NaN	0.69558	1	18429	18429		8.3538	0.076221	1	6534.3			7048	5926	4057	4148	5645	5645					-0.03572134303522034
FYSISQERF	9	Unmodified	_FYSISQERF_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.78783821305	2	588.787838	1175.56112	1.8348	0.0010803	0.63811	0.00037571	2.4729	0.001456	588.7890543620812	21.778	0.19265	21.778	21.705	21.898	0	1215	91	0.8891654	0.055143297	0.8891654	360.31982	0	22.345947						354	9	4	NaN	NaN	NaN	0.054111	1	15659	15659		45.165	13.604	1	40457			7049	5337	4058	4149	5646	5646					-0.019634623906767956
FYSISQERF	9	Unmodified						0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	588.787838	1175.56112	1.0867	0.00063986	3.8095	0.002243	4.8963	0.0028829	588.7907965776117	22.163	0.048241	22.149	22.125	22.173	-0.013731	1170	82	0.91673553	0.04963696	0.9152161	371.49216		20.114594	0.18573	0.0021664	0.013025	NaN	45.165	84	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9463.8			7050	5337	4058	4149							-0.019634623906767956
FYSKDISFL	9	Unmodified	_FYSKDISFL_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2896824102501	2	560.289682	1118.56481	1.5193	0.00085125	7.2294	0.0040505	8.7487	0.0049018	560.2950305625644	23.971	0.1206	23.971	23.899	24.019	0	1224	52	0.883646	0.03128332	0.883646	358.2947	0	12.68454						103	6	3	NaN	NaN	NaN	0.55027	1	13622	13622		7.5404	1.8462	1	9156.9	+		7051	9660	4059	4150	5647	5647					0.010272073831856687
FYSLFSETI	9	Unmodified	_FYSLFSETI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5404538745	1	1106.54045	1105.53318	1.5973	0.0017675	0.090267	9.9884E-05	1.6876	0.0018673	1106.541213153454	32.587	0.04826	32.587	32.563	32.611	0	60	49	1.582944	0.028250933	1.582944	320.9703	0	5.7283936						62	3	2	NaN	NaN	NaN	0.31737	1	13078	13078		17.799	3.374	1	3692.4			7052	6112	4060	4151	5648	5648					-0.015367853707630275
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7873068968	2	542.787307	1083.56006	1.4294	0.00077584	-1.2724	-0.00069062	0.15701	8.5221E-05	542.7865742283777	27.205	0.12064	27.205	27.157	27.277	0	1239	61	0.87444305	0.036813855	0.87444305	354.70258	0	14.932892						219	6	3	NaN	NaN	NaN	0.013281	1	12126	12126		82.96	24.725	1	64176			7053	5219	4061	4152	5649	5649					0.02162323240418118
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7873068968	2	542.787307	1083.56006	1.2121	0.00065793	-1.4137	-0.00076732	-0.20153	-0.00010939	542.7864168758729	27.228	0.12065	27.218	27.17	27.291	-0.010124	1236	82	0.876284	0.049706757	0.8747646	355.44934	0	20.16269						231	6	4	NaN	NaN	NaN	0.062072	1	11816	11816		41.785	23.986	1	64682			7054	5219	4061	4152	5650	5650					0.02162323240418118
FYSQYDPCMT	10	Unmodified	_FYSQYDPCMT_					0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.74392448785	2	627.743924	1253.4733	1.9908	0.0012497	0.42714	0.00026813	2.418	0.0015179	627.7439750166371	23.224	0.24113	23.224	23.128	23.369	0	1161	58	0.9222442	0.034895778	0.9222442	373.45493	0	14.130768						271	11	4	NaN	NaN	NaN	0.5917	1	17858	17858		15.463	5.1025	1	29298	+	+	7055	8252	4062	4153	5651	5651					-0.14330167367961621
FYSQYDPCMT	10	Unmodified						0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.743924	1253.4733	1.9908	0.0012497	0.42714	0.00026813	2.418	0.0015179	627.7439750166371	23.224	0.24113	23.224	23.128	23.369	0	1161	58	0.9222442	0.034895778	0.9222442	373.45493		14.130768	0.006929	-0.00089697	0.0016777	NaN	15.463	271	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29298	+	+	7056	8252	4062	4153							-0.14330167367961621
FYSQYDPCMT	10	Unmodified						0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.743924	1253.4733	1.4827	0.00093076	1.621	0.0010176	3.1037	0.0019483	627.7442815831245	23.223	0.19301	23.21	23.186	23.379	-0.013294	1164	55	0.9204082	0.03305024	0.91888875	372.71146		13.383423	-0.006929	0.00060192	-0.0016777	NaN	15.463	269	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31939	+	+	7057	8252	4062	4153							-0.14330167367961621
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.34004095905	2	601.340041	1200.66553	1.4334	0.00086199	-1.3277	-0.00079838	0.10578	6.361E-05	601.3393530147385	21.778	0.12035	21.778	21.73	21.85	0	1119	37	0.9479278	0.021997869	0.9479278	384.03915	0	8.912109						121	6	3	NaN	NaN	NaN	0.14337	1	16508	16508		39.039	19.921	1	10735			7058	4946	4063	4154	5652	5652					0.07322284156703063
FYSRLLQKF	9	Unmodified						0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	601.340041	1200.66553	0.90156	0.00054214	-1.041	-0.00062597	-0.1394	-8.3825E-05	601.338990345705	22.042	0.28913	22.029	21.908	22.197	-0.013731	1113	34	0.9515937	0.02016145	0.95007426	385.52435		8.168121	0.12548	0.00014257	0.0010732	NaN	39.039	131	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11111			7059	4946	4063	4154							0.07322284156703063
FYSSAQRRG	9	Unmodified	_FYSSAQRRG_					0	0	0			REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF	REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5330175062	1	1071.53302	1070.52574	2.0267	0.0021716	-0.80287	-0.0008603	1.2238	0.0013113	1071.5336552221568	28.146	0.096537	28.146	28.146	28.243	0	111	61	1.5529068	0.03537357	1.5529068	315.00668	0	7.175537						62	5	2	NaN	NaN	NaN	0.56671	1	11578	11578		6.8632	0	1	5412.7	+		7060	11475	4064	4155	5653	5653					-0.006700801278157087
FYSSAQRRG	9	Unmodified						0	0	0			REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF	REV__ENST00000226328.8_1_4:71587943-71588060:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1071.53302	1070.52574	2.0267	0.0021716	-0.80287	-0.0008603	1.2238	0.0013113	1071.5336552221568	28.146	0.096537	28.146	28.146	28.243	0	111	61	1.5529068	0.03537357	1.5529068	315.00668		7.175537	0	0	0	NaN	6.8632	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5412.7	+		7061	11475	4064	4155							-0.006700801278157087
FYSSCEQLD	9	Unmodified	_FYSSCEQLD_					0	0	0		BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2211394958	2	546.221139	1090.42773	1.1423	0.00062395	-1.1721	-0.00064024	-0.029825	-1.6291E-05	546.7216056076037	29.183	0.096571	29.175	29.151	29.248	-0.0077209	1290	46	0.84311575	0.027668655	0.8415963	341.96817	0	11.222443						169	5	4	NaN	NaN	NaN	0.56671	1	12095	12095		6.8632	0	1	14653			7062	63	4065	4156	5654	5654					-0.1138706955869111
FYSSSLLVI	9	Unmodified	_FYSSSLLVI_					0	0	0		nc|ENSG00000176095|Q92551-2|IP6K1;IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant;ENSG00000161896|ENST00000293756|IP6K3;ENSG00000068745|ENST00000328631|IP6K2;ENSG00000176095|ENST00000321599|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5662746945	1	1028.56627	1027.559	0.93201	0.00095863	-0.843	-0.00086708	0.089009	9.1552E-05	1028.5653158740456	32.344	0.096542	32.341	32.292	32.389	-0.0037613	90	82	1.5652816	0.04774165	1.5637622	317.68585	0	9.689545						147	5	3	NaN	NaN	NaN	0.45297	1	9493	9493		11.548	3.3036	1	11987			7063	736	4066	4157	5655	5655					0.04632108871510354
FYSSSLLVI	9	Unmodified						0	0	0		nc|ENSG00000176095|Q92551-2|IP6K1;IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant;ENSG00000161896|ENST00000293756|IP6K3;ENSG00000068745|ENST00000328631|IP6K2;ENSG00000176095|ENST00000321599|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.56627	1027.559	1.4803	0.0015226	-2.7182	-0.0027958	-1.2379	-0.0012733	1028.5628750166559	32.345	0.072411	32.345	32.321	32.394	0	93	91	1.5635144	0.05305469	1.5635144	317.32715		10.767853	0.0024397	-0.0011274	-0.00012392	NaN	11.548	159	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12897			7064	736	4066	4157							0.04632108871510354
FYTDAAFLL	9	Unmodified	_FYTDAAFLL_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5349745661	1	1060.53497	1059.5277	1.2201	0.0012939	0.6644	0.00070462	1.8845	0.0019986	1060.5351023306594	33.745	0.26545	33.745	33.624	33.89	0	90	115	1.5652816	0.06720269	1.5652816	317.55887	0	13.63385						445	12	3	NaN	NaN	NaN	0.013314	1	11065	11065		82.858	47.562	1	49391			7065	3501	4067	4158	5656	5656					0.00031535837410956447
FYTDAAFLL	9	Unmodified	_FYTDAAFLL_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5349745661	1	1060.53497	1059.5277	0.88571	0.00093932	0.75986	0.00080585	1.6456	0.0017452	1060.5355047654011	33.744	0.14485	33.742	33.718	33.863	-0.0018463	87	106	1.5670487	0.061880827	1.5655292	317.91736	0	12.554169						363	7	4	NaN	NaN	NaN	0.03623	1	10832	10832		52.758	26.957	1	42320			7066	3501	4067	4158	5657	5657					0.00031535837410956447
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.79767461785	2	595.797675	1189.5808	0.87689	0.00052245	-1.9043	-0.0011346	-1.0274	-0.00061211	595.7968746465287	33.673	0.36186	33.673	33.528	33.89	0	1164	97	0.9204082	0.058806837	0.9204082	372.92947	0	23.82724						379	16	3	NaN	NaN	NaN	1.0592E-07	1	16140	16140		137.62	76.346	1	233560			7067	3216	4068	4159	5658	5658					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.79767461785	2	595.797675	1189.5808	0.86225	0.00051373	-1.19	-0.00070899	-0.32773	-0.00019526	595.7962632125044	34.806	0.1206	34.806	34.806	34.927	0	1167	49	0.91857195	0.029387534	0.91857195	372.1855	0	11.907166						127	6	3	NaN	NaN	NaN	0.20577	1	16141	16141		24.961	11.958	1	10017			7068	3216	4068	4159	5659	5659					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.79767461785	2	595.797675	1189.5808	1.0955	0.00065272	0.76321	0.00045472	1.8587	0.0011074	595.7976319520507	34.734	0.096447	34.734	34.662	34.758	0	1167	43	0.91857195	0.025711298	0.91857195	372.1855	0	10.417664						90	5	2	NaN	NaN	NaN	0.16171	1	16142	16142		27.789	9.5553	1	10380			7069	3216	4068	4159	5660	5660					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.79767461785	2	595.797675	1189.5808	0.68483	0.00040802	-2.5831	-0.001539	-1.8983	-0.001131	595.79653714225	33.671	0.38609	33.67	33.597	33.983	-0.0018463	1161	85	0.9222442	0.051433682	0.92072475	373.6734	0	20.839844						566	17	5	NaN	NaN	NaN	0.00020136	1	15530	15530		116.74	83.038	1	261430			7070	3216	4068	4159	5661	5661					-0.006410863799146682
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENST00000580356.5_1_17:8159124-8159921:+|nuORF;ENSG00000178921|ENST00000314666|PFAS	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENST00000580356.5_1_17:8159124-8159921:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3271305490501	2	616.327131	1230.63971	1.6395	0.0010104	-1.5569	-0.00095957	0.082542	5.0873E-05	616.3265272536295	18.053	0.047897	18.053	18.053	18.101	0	1137	31	0.9369253	0.018345416	0.9369253	379.4766	0	7.430298						54	3	2	NaN	NaN	NaN	0.42817	1	17276	17276		12.57	2.8237	1	4570			7071	5131	4069	4160	5662	5662					0.03361389914425672
FYTRELSNFYF	11	Unmodified	_FYTRELSNFYF_					0	0	0		ENSG00000067704|ENST00000366922|IARS2;ENST00000467924.1_1_1:220313569-220316509:+|nuORF	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.8537094403	2	743.853709	1485.69287	1.7641	0.0013122	-5.8054	-0.0043184	-4.0413	-0.0030061	743.8497011051162	28.098	0.096542	28.098	28.074	28.17	0	1017	46	1.010141	0.027401268	1.010141	408.35065	0	11.076996						66	5	2	NaN	NaN	NaN	0.71279	1	20533	20533		6.6174	1.4285	1	4535.7			7072	721	4070	4161	5663	5663					-0.030552770935855733
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2900167612501	2	569.290017	1136.56548	2.258	0.0012855	-3.6001	-0.0020495	-1.3421	-0.00076404	569.2889005652443	25.202	0.19302	25.202	25.129	25.322	0	1200	121	0.89836043	0.07359594	0.89836043	364.1908	0	29.835419						758	9	5	NaN	NaN	NaN	0.00017726	1	14340	14340		118.2	79.286	1	251750			7073	530	4071	4162	5664	5664					0.0026604682288962067
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2900167612501	2	569.290017	1136.56548	1.8756	0.0010678	-3.3453	-0.0019044	-1.4697	-0.00083666	569.2890572683302	25.226	0.14472	25.214	25.141	25.286	-0.012011	1200	121	0.89836043	0.07359594	0.896841	364.1908	0	29.835419						781	7	5	NaN	NaN	NaN	0.017076	1	13869	13869		75.698	44.137	1	254810			7074	530	4071	4162	5665	5665					0.0026604682288962067
FYVDSDMVNEF	11	Unmodified	_FYVDSDMVNEF_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.28701072305	2	683.287011	1364.55947	2.0054	0.0013702	-1.9067	-0.0013028	0.098656	6.741E-05	683.286051430661	29.667	0.28959	29.667	29.594	29.884	0	1113	112	0.9515937	0.06780857	0.9515937	384.99777	0	27.434113						792	13	4	NaN	NaN	NaN	0.0002439	1	19734	19734		80.442	45.988	1	155030			7075	1267	4072	4163	5666	5666					-0.1082288426159721
FYVDSDMVNEF	11	Unmodified	_FYVDSDMVNEF_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.28701072305	2	683.287011	1364.55947	1.5391	0.0010517	-2.4992	-0.0017077	-0.96005	-0.00065599	683.2853255467508	29.69	0.33781	29.683	29.562	29.9	-0.0070648	1113	121	0.9515937	0.07330257	0.95007426	384.99777	0	29.656921						981	15	5	NaN	NaN	NaN	9.7936E-12	1	18815	18815		113.43	81.752	1	188730			7076	1267	4072	4163	5667	5667					-0.1082288426159721
FYVDSDMVNEF	11	Oxidation (M)	_FYVDSDM(Oxidation (M))VNEF_		FYVDSDM(1)VNEF		FYVDSDM(49)VNEF	0	0	1		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.2844680341	2	691.284468	1380.55438	2.2831	0.0015783	-2.5731	-0.0017788	-0.29002	-0.00020048	691.2827826012322	26.167	0.072392	26.167	26.119	26.191	0	1104	85	0.9570911	0.051289678	0.9570911	387.17694	0	20.748474						333	4	5	NaN	NaN	NaN	0.054678	1	19889	19889		48.65	33.796	1	81936			7077	1267	4072	4164	5668	5668		137			-0.12067188124228778
FYVDSDMVNEF	11	Oxidation (M)	_FYVDSDM(Oxidation (M))VNEF_		FYVDSDM(1)VNEF		FYVDSDM(84)VNEF	0	0	1		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.2844680341	2	691.284468	1380.55438	1.8587	0.0012849	-3.2961	-0.0022785	-1.4374	-0.00099365	691.2827182220013	26.167	0.048285	26.156	26.131	26.18	-0.011135	1107	91	0.9552588	0.054959178	0.9537394	386.43573	0	22.23291						280	3	4	NaN	NaN	NaN	0.00017469	1	18958	18958		83.529	53.493	1	75627			7078	1267	4072	4164	5669	5669		137			-0.12067188124228778
FYVDSDMVNEF	11	Oxidation (M)	_FYVDSDM(Oxidation (M))VNEF_		FYVDSDM(1)VNEF		FYVDSDM(81)VNEF	0	0	1		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.2844680341	2	691.284468	1380.55438	1.7793	0.00123	-2.4275	-0.0016781	-0.6482	-0.00044809	691.2829703539767	26.263	0.24126	26.252	26.228	26.469	-0.011137	1119	97	0.9479278	0.05863571	0.94640833	383.47006	0	23.720215						623	11	5	NaN	NaN	NaN	0.00023361	1	18959	18959		80.901	60.452	1	124000			7079	1267	4072	4164	5670	5670		137			-0.12067188124228778
FYVDTVRAF	9	Unmodified	_FYVDTVRAF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2874740723	2	559.287474	1116.5604	1.2628	0.00070626	-0.11874	-6.6412E-05	1.144	0.00063985	559.2874028982591	24.478	0.096525	24.465	24.441	24.537	-0.012747	1191	79	0.90387505	0.047816634	0.9023556	366.50507	0	19.388794						143	5	2	NaN	NaN	NaN	0.54912	1	13139	13139		7.5876	0.72439	1	23033			7080	5060	4073	4165	5671	5671					0.0067774296028346726
FYVDTVRAF	9	Unmodified						0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.287474	1116.5604	1.1956	0.00066869	0.48784	0.00027284	1.6835	0.00094154	559.288022660268	24.454	0.096487	24.454	24.406	24.502	0	1194	49	0.902037	0.029409707	0.902037	365.75977		11.92511	-0.0055766	0.00038851	-0.00015929	NaN	7.5876	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19873			7081	5060	4073	4165							0.0067774296028346726
FYVERLYQ	8	Unmodified	_FYVERLYQ_					0	0	0			REV__ENST00000479014.1_1_7:87005212-87011518:+|nuORF	REV__ENST00000479014.1_1_7:87005212-87011518:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2874740723	2	559.287474	1116.5604	1.1956	0.00066869	0.48784	0.00027284	1.6835	0.00094154	559.288022660268	24.454	0.096487	24.454	24.406	24.502	0	1194	49	0.902037	0.029409707	0.902037	365.75977	0	11.92511						102	5	2	NaN	NaN	NaN	0.72013	1	13534	13534		17.799	0.94067	1	19873	+		7082	12366	4074	4166	5672	5672					0.0067774296028346726
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.34753164015	2	641.347532	1280.68051	2.011	0.0012898	-2.8598	-0.0018342	-0.84884	-0.0005444	641.3457242790851	27.857	0.19303	27.857	27.808	28.001	0	1113	70	0.9515937	0.042164862	0.9515937	385.25055	0	17.070374						307	9	4	NaN	NaN	NaN	0.29017	1	18435	18435		40.006	28.267	1	73663			7083	3603	4075	4167	5673	5673					0.05139731234021383
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.34753164015	2	641.347532	1280.68051	1.7191	0.0011026	-3.2079	-0.0020574	-1.4888	-0.00095484	641.3455048055819	27.88	0.19312	27.87	27.822	28.015	-0.009552	1113	64	0.9515937	0.0384984	0.95007426	385.25055	0	15.585999						364	9	5	NaN	NaN	NaN	0.29513	1	17615	17615		28.495	19.533	1	80207			7084	3603	4075	4167	5674	5674					0.05139731234021383
FYVPLVVLI	9	Unmodified	_FYVPLVVLI_					0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.6597811492002	1	1062.65978	1061.6525	1.4668	0.0015587	-1.1886	-0.0012631	0.27813	0.00029556	1062.6587451219546	42.938	0.072018	42.938	42.914	42.986	0	84	52	1.5688156	0.030030966	1.5688156	318.26764	0	6.092407						94	4	2	NaN	NaN	NaN	0.055365	1	11205	11205		44.632	23.68	1	5624			7085	2719	4076	4168	5675	5675					0.12414453044630136
FYVPLVVLI	9	Unmodified	_FYVPLVVLI_					0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.8335288079002	2	531.833529	1061.6525	0.30459	0.00016199	-0.33841	-0.00017998	-0.033823	-1.7988E-05	531.8330406226025	42.936	0.11995	42.946	42.874	42.994	0.010418	1251	34	0.8670771	0.020261824	0.8655577	351.80582	0	8.221008						83	6	2	NaN	NaN	NaN	0.26823	1	10948	10948		20.952	10.901	1	6772.7			7086	2719	4076	4168	5676	5676					0.12414453044630136
FYVPLVVLI	9	Unmodified						0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.833529	1061.6525	1.324	0.00070414	-1.012	-0.00053821	0.31198	0.00016592	531.833160093311	42.938	0.095974	42.938	42.89	42.986	0	1254	34	0.8652351	0.02026403	0.8652351	351.05844		8.221893	-0.0044113	-0.00042977	-0.00016127	NaN	20.952	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7077.9			7087	2719	4076	4168							0.12414453044630136
FYVRGLFSF	9	Unmodified	_FYVRGLFSF_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.3003844823002	2	568.300384	1134.58622	1.5934	0.00090554	-1.2436	-0.00070677	0.34978	0.00019878	568.2997307164559	30.608	0.26548	30.608	30.535	30.801	0	1179	88	0.9112251	0.053302348	0.9112251	369.4138	0	21.608948						435	12	4	NaN	NaN	NaN	0.04743	1	14272	14272		48.002	10.7	1	115300			7088	2618	4077	4169	5677	5677					0.024306372025876044
FYVRGLFSF	9	Unmodified	_FYVRGLFSF_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.3003844823002	2	568.300384	1134.58622	1.0832	0.0006156	-0.8451	-0.00048027	0.23812	0.00013533	568.2997797565049	30.655	0.21715	30.649	30.601	30.818	-0.0057545	1176	118	0.9130621	0.071721196	0.91154265	370.1585	0	29.07602						437	10	4	NaN	NaN	NaN	0.026295	1	13808	13808		63.958	43.51	1	107630			7089	2618	4077	4169	5678	5678					0.024306372025876044
FYVSNWIV	8	Unmodified	_FYVSNWIV_					0	0	0		ENST00000264246.7_1_3:119276596-119278392:-|nuORF	ENST00000264246.7_1_3:119276596-119278392:-|nuORF	ENST00000264246.7_1_3:119276596-119278392:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2660103487	2	514.26601	1026.51747	1.142	0.00058731	2.5093	0.0012904	3.6513	0.0018778	514.2672854644557	11.598	0.26409	11.59	11.494	11.758	-0.0075302	1284	37	0.8468043	0.02212894	0.8452849	343.73093	0	8.982483						162	12	2	NaN	NaN	NaN	0.79379	1	9437	9437		10.052	1.0896	1	16901			7090	6326	4078	4170	5679	5679					0.005269729028441361
FYYMNHTIF	9	Unmodified	_FYYMNHTIF_					0	0	0			REV__ENST00000424085.6_1_1:31405847-31406009:-|nuORF	REV__ENST00000424085.6_1_1:31405847-31406009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.2813344494	2	618.281334	1234.54812	0.74132	0.00045834	-8.2638	-0.0051093	-7.5225	-0.004651	618.7791331411104	34.588	0.19294	34.587	34.491	34.684	-0.0006485	1155	52	0.92591566	0.031205654	0.9243962	375.0043	0	12.638611						169	9	3	NaN	NaN	NaN	0.53206	1	16655	16655		8.2903	1.8604	1	15201	+		7091	12119	4079	4171	5680	5680					-0.059776167744303166
FYYNISILA	9	Unmodified	_FYYNISILA_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2922250992001	2	552.292225	1102.5699	1.1191	0.0006181	-1.504	-0.00083062	-0.3848	-0.00021252	552.2918552639243	34.443	0.1688	34.443	34.395	34.563	-0.0006485	1206	64	0.894683	0.03863573	0.89316356	362.83398	0	15.668549						247	8	4	NaN	NaN	NaN	0.23112	1	12610	12610		23.334	4.2161	1	33145	+		7092	10253	4080	4172	5681	5681					0.02271511245817237
FYYYVSII	8	Unmodified	_FYYYVSII_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2760437187501	2	534.276044	1066.53753	1.6283	0.00086996	-4.0318	-0.0021541	-2.4035	-0.0012841	534.2744115974044	20.838	0.12051	20.838	20.814	20.935	0	1254	40	0.8652351	0.023945808	0.8652351	351.03787	0	9.715149						132	6	3	NaN	NaN	NaN	0.82332	1	11403	11403		6.0903	1.1806	1	11700	+		7093	9411	4081	4173	5682	5682					0.006927238428033888
GAAAACLL	8	Unmodified	_GAAAACLL_					0	0	0			REV__ENSG00000117906|ENST00000394885|RCN2	REV__ENSG00000117906|ENST00000394885|RCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3650724663001	1	689.365072	688.357796	1.4791	0.0010196	8.4782	0.0058446	9.9573	0.0068642	689.3716665308673	24.502	0.14465	24.502	24.454	24.598	0	657	52	1.2279087	0.030654073	1.2279087	250.83372	0	6.261917						164	7	3	NaN	NaN	NaN	0.83849	1	2995	2995		4.0537	2.3833	1	16926	+		7094	9256	4082	4174	5683	5683					0.0011514135402421743
GAAAACLL	8	Unmodified						0	0	0			REV__ENSG00000117906|ENST00000394885|RCN2	REV__ENSG00000117906|ENST00000394885|RCN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	689.365072	688.357796	1.4791	0.0010196	8.4782	0.0058446	9.9573	0.0068642	689.3716665308673	24.502	0.14465	24.502	24.454	24.598	0	657	52	1.2279087	0.030654073	1.2279087	250.83372		6.261917	0.0064809	-0.0010169	0.00075972	NaN	4.0537	164	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16926	+		7095	9256	4082	4174							0.0011514135402421743
GAAACAWC	8	Unmodified	_GAAACAWC_					0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.2854419368	1	752.285442	751.278165	1.6472	0.0012392	-8.2307	-0.0061918	-6.5835	-0.0049527	752.2794783371786	53.626	0.048054	53.626	53.602	53.65	0	432	94	1.3625998	0.055482388	1.3625998	277.8932	0	11.315277						115	3	2	NaN	NaN	NaN	0.84876	1	4083	4083		0.39566	0.065779	1	19780	+		7096	11749	4083	4175	5684	5684					-0.10742248591634507
GAAACAWC	8	Unmodified						0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	752.285442	751.278165	1.6472	0.0012392	-8.2307	-0.0061918	-6.5835	-0.0049527	752.2794783371786	53.626	0.048054	53.626	53.602	53.65	0	432	94	1.3625998	0.055482388	1.3625998	277.8932		11.315277	0.0011625	-0.0011653	-0.0010288	NaN	0.39566	115	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19780	+		7097	11749	4083	4175							-0.10742248591634507
GAAACAWC	8	Unmodified						0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.285442	751.278165	-0.2293	-0.0001725	-5.8926	-0.004433	-6.122	-0.0046055	752.2807434477612	53.624	0.0481	53.623	53.623	53.671	-0.00059128	426	97	1.3661768	0.057263136	1.3646574	278.6227		11.678406	-0.0011625	0.00059354	0.0010288	NaN	0.39566	181	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31404	+		7098	11749	4083	4175							-0.10742248591634507
GAAAGMVG	8	Unmodified	_GAAAGMVG_					0	0	0		ENST00000562866.1_1_16:89782989-89783046:+|nuORF;ENST00000562298.1_1_16:89782989-89783791:+|nuORF	ENST00000562866.1_1_16:89782989-89783046:+|nuORF	ENST00000562866.1_1_16:89782989-89783046:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805004	2	317.154874	632.295196	1.2091	0.00038346	-1.0325	-0.00032745	0.1766	5.6008E-05	317.15467483347635	42.219	0.07206	42.219	42.195	42.267	0	1536	46	0.69119483	0.027912676	0.69119483	282.86884	0	11.423187						75	4	2	NaN	NaN	NaN	0.84876	1	1521	1521		0.39566	0	1	7097.9			7099	7603	4084	4176	5685	5685					-0.035660047141618634
GAAARGGK	8	Unmodified	_GAAARGGK_					0	0	0		ENST00000527223.6_2_19:55670954-55672526:-|nuORF;ENST00000455045.5_1_19:55670954-55672526:-|nuORF	ENST00000527223.6_2_19:55670954-55672526:-|nuORF	ENST00000527223.6_2_19:55670954-55672526:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3896477329	1	687.389648	686.382371	2.0015	0.0013758	3.8236	0.0026283	5.8252	0.0040042	687.3922380469656	32.707	0.28958	32.707	32.635	32.925	0	642	172	1.2369217	0.10289168	1.2369217	252.68907	0	21.019592						672	13	4	NaN	NaN	NaN	0.84455	1	2958	2958		2.7852	1.5433	1	292930			7100	7055	4085	4177	5686	5686					0.02663537551745776
GAAARGGK	8	Unmodified						0	0	0		ENST00000527223.6_2_19:55670954-55672526:-|nuORF;ENST00000455045.5_1_19:55670954-55672526:-|nuORF	ENST00000527223.6_2_19:55670954-55672526:-|nuORF	ENST00000527223.6_2_19:55670954-55672526:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	687.389648	686.382371	1.518	0.0010434	3.8432	0.0026418	5.3612	0.0036852	687.3924266943428	32.706	0.2413	32.703	32.631	32.872	-0.0031052	639	169	1.2387238	0.101070285	1.2372043	253.0572		20.647507	-0.0020946	6.677E-06	0.00014129	NaN	2.7852	667	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304960			7101	7055	4085	4177							0.02663537551745776
GAAAVVSEFVL	11	Unmodified	_GAAAVVSEFVL_					0	0	0			REV__ENST00000417960.5_1_3:172468522-172468597:+|nuORF	REV__ENST00000417960.5_1_3:172468522-172468597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7951319289001	2	531.795132	1061.57571	1.0248	0.00054499	-4.4925	-0.0023891	-3.4677	-0.0018441	531.7924697199841	21.585	0.14457	21.571	21.475	21.619	-0.013895	1278	61	0.85049206	0.03686565	0.8489726	345.07697	0	14.957794						146	7	2	NaN	NaN	NaN	0.71564	1	10937	10937		6.4299	0.17972	1	21151	+		7102	12094	4086	4178	5687	5687					0.04738609757487211
GAAEELLTGPG	11	Unmodified	_GAAEELLTGPG_					0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5102163786001	1	1014.51022	1013.50294	2.4608	0.0024965	-1.4374	-0.0014583	1.0234	0.0010382	1014.5091085048385	26.167	0.096533	26.167	26.119	26.215	0	243	76	1.4749115	0.04443562	1.4749115	299.3995	0	9.020203						139	5	2	NaN	NaN	NaN	0.25335	1	9121	9121		27.296	0	1	14978			7103	5708	4087	4179	5688	5688					-0.003271440359412736
GAAEELLTGPG	11	Unmodified						0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.51022	1013.50294	2.2377	0.0022701	-2.6237	-0.0026617	-0.38601	-0.00039161	1014.5081546037064	26.167	0.14481	26.156	26.083	26.228	-0.011135	240	85	1.4766881	0.049770474	1.4751687	299.76016		10.10318	-0.0056699	-0.00061849	0.00012861	NaN	27.296	164	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16715			7104	5708	4087	4179							-0.003271440359412736
GAAGASTT	8	Unmodified	_GAAGASTT_					0	0	0		ENST00000261867.4_1_15:45814856-45814958:-|nuORF	ENST00000261867.4_1_15:45814856-45814958:-|nuORF	ENST00000261867.4_1_15:45814856-45814958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	318.1533858940999	2	318.153386	634.292219	1.1044	0.00035138	-0.47006	-0.00014955	0.63438	0.00020183	318.154012983808	41.546	0.096195	41.546	41.498	41.594	0	1503	91	0.711653	0.055798173	0.711653	291.22195	0	22.83368						208	5	3	NaN	NaN	NaN	0.84727	1	1577	1577		1.2418	0.91196	1	12554			7105	6307	4088	4180	5689	5689					-0.03955556567336771
GAAGFPGG	8	Unmodified	_GAAGFPGG_					0	0	0		CON__P04258	CON__P04258	CON__P04258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.2991013911002	1	633.299101	632.291825	1.0595	0.00067097	0.38479	0.00024369	1.4443	0.00091466	633.2990684592794	32.296	0.12068	32.292	32.268	32.389	-0.0037613	1203	40	0.8965218	0.023904443	0.89500237	183.45526	0	4.891571						88	6	2	NaN	NaN	NaN	0.84945	1	1444	1444		0	0	1	8027		+	7106	193	4089	4181	5690	5690					-0.039029314965091544
GAAGFPGG	8	Unmodified						0	0	0		CON__P04258	CON__P04258	CON__P04258	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	633.299101	632.291825	1.2826	0.00081225	-2.6497	-0.001678	-1.3671	-0.00086579	633.2972511357835	32.297	0.096561	32.297	32.273	32.37	0	1203	40	0.8965218	0.023904443	0.8965218	183.45526		4.891571	0.0024173	-0.00090112	0.00075972	NaN	0	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7618.2		+	7107	193	4089	4181							-0.039029314965091544
GAAGFSSS	8	Unmodified	_GAAGFSSS_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15338589410004	2	342.153386	682.292219	1.364	0.00046669	4.6832	0.0016024	6.0471	0.0020691	342.15531110696315	32.273	0.21719	32.273	32.177	32.394	0	1521	55	0.70049703	0.033471584	0.70049703	286.23242	0	13.676941						216	10	2	NaN	NaN	NaN	0.84727	1	2879	2879		1.2418	0	1	24237			7108	1155	4090	4182	5691	5691					-0.06163556567321393
GAAGKIKV	8	Unmodified	_GAAGKIKV_					0	0	0		tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	tr|U7T6T2|U7T6T2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00158PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.4774001077002	1	743.4774	742.470124	1.6784	0.0012478	-0.090279	-6.712E-05	1.5881	0.0011807	743.4786749102586	56.277	0.047962	56.277	56.253	56.301	0	528	49	1.3052634	0.028717041	1.3052634	266.2564	0	5.85791						58	3	2	NaN	NaN	NaN	0.84887	1	3960	3960		0.32989	0	1	4246.3			7109	14004	4091	4183	5692	5692					0.08858738422520673
GAAGKKRI	8	Unmodified	_GAAGKKRI_					0	0	0			REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.5100972196002	1	800.510097	799.502821	-0.18799	-0.00015049	0.12974	0.00010386	-0.058243	-4.6624E-05	800.5119746607038	55.698	0.12041	55.698	55.674	55.794	-0.00059128	363	94	1.4036897	0.055334926	1.4021703	285.96344	0	11.27298						185	6	2	NaN	NaN	NaN	0.84692	1	4654	4654		1.4396	1.0439	1	16072	+		7110	12189	4092	4184	5693	5693					0.09504945545381815
GAAGKKRI	8	Unmodified						0	0	0			REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	800.510097	799.502821	-0.18799	-0.00015049	0.12974	0.00010386	-0.058243	-4.6624E-05	800.5119746607038	55.698	0.12041	55.698	55.674	55.794	-0.00059128	363	94	1.4036897	0.055334926	1.4021703	285.96344		11.27298	-0.0013985	0.0023897	-0.0016518	NaN	1.4396	185	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16072	+		7111	12189	4092	4184							0.09504945545381815
GAAGLPDD	8	Unmodified	_GAAGLPDD_					0	0	0			REV__nc|ENSG00000172936|Q99836-3|MYD88	REV__nc|ENSG00000172936|Q99836-3|MYD88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.16649326935	2	358.166493	714.318434	1.8252	0.00065373	-6.2547	-0.0022402	-4.4295	-0.0015865	358.1639741943366	53.626	0.048054	53.626	53.602	53.65	0	1524	34	0.698637	0.020460427	0.698637	285.22137	0	8.353058						44	3	2	NaN	NaN	NaN	0.84692	1	3501	3501		1.4396	0	1	3831.3	+		7112	13171	4093	4185	5694	5694					-0.05015287395849555
GAAKGATG	8	Unmodified	_GAAKGATG_					0	0	0			REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3362151789001	1	632.336215	631.328939	1.0561	0.00066778	7.1236	0.0045045	8.1797	0.0051723	632.3408684156036	30.825	0.12065	30.825	30.777	30.897	0	714	55	1.1936152	0.032525063	1.1936152	244.25732	0	6.6558075						109	6	2	NaN	NaN	NaN	0.84692	1	1509	1509		1.4396	0	1	11002	+		7113	12237	4094	4186	5695	5695					-0.0014725995075650644
GAAKGATG	8	Unmodified						0	0	0			REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	632.336215	631.328939	1.0561	0.00066778	7.1236	0.0045045	8.1797	0.0051723	632.3408684156036	30.825	0.12065	30.825	30.777	30.897	0	714	55	1.1936152	0.032525063	1.1936152	244.25732		6.6558075	0.015495	0.00017411	0.00075972	NaN	1.4396	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11002	+		7114	12237	4094	4186							-0.0014725995075650644
GAAKGATG	8	Unmodified						0	0	0			REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	REV__ENST00000453179.1_1_6:24749270-24751830:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	632.336215	631.328939	1.1375	0.0007193	6.4428	0.004074	7.5804	0.0047933	632.3400720535518	30.8	0.14483	30.794	30.77	30.915	-0.0057545	714	70	1.1936152	0.04156649	1.1920958	244.25734		8.506027	-0.015495	-0.00025637	-0.00075972	NaN	1.4396	186	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16254	+		7115	12237	4094	4186							-0.0014725995075650644
GAAPPELAF	9	Unmodified	_GAAPPELAF_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4512449366999	1	872.451245	871.443968	1.5506	0.0013528	0.18386	0.00016041	1.7344	0.0015132	872.450623320345	26.408	0.048273	26.397	26.373	26.421	-0.011137	456	70	1.348284	0.041155696	1.3467646	274.29288	0	8.37265						81	3	2	NaN	NaN	NaN	0.58159	1	5538	5538		6.2502	1.8371	1	5613.1			7116	4403	4095	4187	5696	5696					0.003104244603719053
GAASGGAR	8	Unmodified	_GAASGGAR_					0	0	0		ENST00000609111.1_1_10:88728383-88728773:-|nuORF	ENST00000609111.1_1_10:88728383-88728773:-|nuORF	ENST00000609111.1_1_10:88728383-88728773:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3267131251	1	646.326713	645.319437	2.0152	0.0013024	-6.6951	-0.0043272	-4.68	-0.0030248	646.3224265879676	16.446	0.16778	16.446	16.35	16.518	0	774	70	1.1574414	0.041637897	1.1574414	236.74614	0	8.516693						260	8	3	NaN	NaN	NaN	0.84692	1	1929	1929		1.4396	0	1	32990			7117	7792	4096	4188	5697	5697					-0.017410282362902763
GAASGGAR	8	Unmodified						0	0	0		ENST00000609111.1_1_10:88728383-88728773:-|nuORF	ENST00000609111.1_1_10:88728383-88728773:-|nuORF	ENST00000609111.1_1_10:88728383-88728773:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	646.326713	645.319437	2.1893	0.001415	-6.9292	-0.0044785	-4.7399	-0.0030635	646.3222690382215	16.443	0.38359	16.43	16.334	16.717	-0.012995	777	73	1.1556307	0.043445826	1.1541113	236.37576		8.88652	-0.0080417	-6.0595E-05	-0.0016651	NaN	1.4396	450	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54317			7118	7792	4096	4188							-0.017410282362902763
GAAVVVTP	8	Unmodified	_GAAVVVTP_					0	0	0		ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.4192165268001	1	713.419217	712.41194	0.96891	0.00069124	5.4594	0.0038948	6.4283	0.0045861	713.4226516794346	24.55	0.12054	24.55	24.526	24.647	0	609	49	1.2567334	0.02880311	1.2567334	256.5529	0	5.879959						101	6	2	NaN	NaN	NaN	0.84692	1	3471	3471		1.4396	0	1	10478			7119	4385	4097	4189	5698	5698					0.044230567772387985
GAAVVVTP	8	Unmodified						0	0	0		ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	713.419217	712.41194	1.2171	0.00086832	4.3387	0.0030953	5.5558	0.0039636	713.4210830399119	24.574	0.096443	24.562	24.514	24.61	-0.012392	606	43	1.2585332	0.02520001	1.2570138	256.92035		5.144409	0.0057949	-0.00060484	0.00014023	NaN	1.4396	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8077.2			7120	4385	4097	4189							0.044230567772387985
GACAFPLL	8	Unmodified	_GACAFPLL_					0	0	0		ENST00000300688.7_1_11:118272047-118272203:+|nuORF	ENST00000300688.7_1_11:118272047-118272203:+|nuORF	ENST00000300688.7_1_11:118272047-118272203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.4120226589001	1	791.412023	790.404746	1.9649	0.001555	-1.3138	-0.0010398	0.65106	0.00051525	791.4108459294048	54.62	0.07214	54.62	54.596	54.668	0	435	43	1.360811	0.02504456	1.360811	277.28195	0	5.103119						62	4	2	NaN	NaN	NaN	0.84651	1	4630	4630		1.6704	0	1	5212.2			7121	6409	4098	4190	5699	5699					0.0011600090516594719
GACAFPLL	8	Unmodified						0	0	0		ENST00000300688.7_1_11:118272047-118272203:+|nuORF	ENST00000300688.7_1_11:118272047-118272203:+|nuORF	ENST00000300688.7_1_11:118272047-118272203:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	791.412023	790.404746	0.17261	0.0001366	-0.97897	-0.00077477	-0.80636	-0.00063816	791.410666016055	54.618	0.096214	54.617	54.593	54.689	-0.0006218	432	46	1.3625998	0.026834846	1.3610804	277.64642		5.467926	-0.0013186	0.00015377	0.00013468	NaN	1.6704	66	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5232			7122	6409	4098	4190							0.0011600090516594719
GACAGKPG	8	Unmodified	_GACAGKPG_					0	0	0		ENST00000492555.5_1_3:52568505-52568682:-|nuORF;ENST00000307076.8_1_3:52563277-52568745:-|nuORF	ENST00000492555.5_1_3:52568505-52568682:-|nuORF	ENST00000492555.5_1_3:52568505-52568682:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3133712468	1	660.313371	659.306095	1.6834	0.0011116	8.0298	0.0053022	9.7132	0.0064138	660.3178457797561	32.537	0.072418	32.534	32.51	32.583	-0.0031052	732	37	1.1827712	0.021694899	1.1812518	241.82063	0	4.435608						61	4	2	NaN	NaN	NaN	0.84887	1	2204	2204		0.32989	0	1	3734.2			7123	6429	4099	4191	5700	5700					-0.037186023398930956
GACAKGSL	8	Unmodified	_GACAKGSL_					0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615	1	706.355236	705.34796	0.9732	0.00068743	2.4293	0.001716	3.4025	0.0024034	706.3571970397046	34.927	0.3618	34.927	34.782	35.144	0	660	172	1.2261056	0.1028806	1.2261056	250.34775	0	21.006302						930	16	4	NaN	NaN	NaN	0.81251	1	3311	3311		7.5404	0	1	236470	+		7124	12608	4100	4192	5701	5701					-0.016500466513662104
GACAKGSL	8	Unmodified	_GACAKGSL_					0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615	1	706.355236	705.34796	0.46974	0.0003318	3.8475	0.0027177	4.3173	0.0030495	706.3581706229661	40.128	0.14422	40.128	40.056	40.2	0	675	49	1.2170867	0.02886486	1.2170867	248.50627	0	5.8936462						216	7	4	NaN	NaN	NaN	0.84727	1	3313	3313		1.2418	0	1	35919	+		7125	12608	4100	4192	5702	5702					-0.016500466513662104
GACAKGSL	8	Unmodified	_GACAKGSL_					0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3552360615	1	706.355236	705.34796	1.2347	0.00087217	3.8171	0.0026962	5.0519	0.0035684	706.3579117603941	34.926	0.45837	34.926	34.805	35.263	-4.5776E-05	657	160	1.2279087	0.09564042	1.2263893	250.71591	0	19.527954						838	20	3	NaN	NaN	NaN	0.83582	1	3254	3254		4.4131	0	1	216700	+		7126	12608	4100	4192	5703	5703					-0.016500466513662104
GACAKGSL	8	Unmodified						0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	706.355236	705.34796	0.9732	0.00068743	2.4293	0.001716	3.4025	0.0024034	706.3571970397046	34.927	0.3618	34.927	34.782	35.144	0	660	172	1.2261056	0.1028806	1.2261056	250.34775		21.006302	0.00078758	-0.00052278	-0.00014187	NaN	7.5404	930	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236470	+		7127	12608	4100	4192							-0.016500466513662104
GACAKGSL	8	Unmodified						0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	706.355236	705.34796	0.46974	0.0003318	3.8475	0.0027177	4.3173	0.0030495	706.3581706229661	40.128	0.14422	40.128	40.056	40.2	0	675	49	1.2170867	0.02886486	1.2170867	248.50627		5.8936462	0.0099324	-0.00010544	-0.00014235	NaN	1.2418	216	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35919	+		7128	12608	4100	4192							-0.016500466513662104
GACAKGSL	8	Unmodified						0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	706.355236	705.34796	1.2347	0.00087217	3.8171	0.0026962	5.0519	0.0035684	706.3579117603941	34.926	0.45837	34.926	34.805	35.263	-4.5776E-05	657	160	1.2279087	0.09564042	1.2263893	250.71591		19.527954	-0.00078758	0.00045751	0.00014187	NaN	7.5404	838	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216700	+		7129	12608	4100	4192							-0.016500466513662104
GACAKGSL	8	Unmodified						0	0	0			REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	REV__ENST00000523814.5_1_8:48203675-48320543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	706.355236	705.34796	0.77388	0.00054664	4.084	0.0028847	4.8579	0.0034314	706.357712233362	40.102	0.19234	40.108	40.06	40.252	0.0060463	672	46	1.2188909	0.027062178	1.2173715	248.87463		5.525589	-0.0099324	6.1566E-05	0.00014235	NaN	1.2418	176	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31344	+		7130	12608	4100	4192							-0.016500466513662104
GACFAKGG	8	Unmodified	_GACFAKGG_					0	0	0			REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3290213110001	1	710.329021	709.321745	1.0783	0.00076592	8.3426	0.005926	9.4208	0.0066919	710.3350163899792	32.924	0.14478	32.921	32.873	33.018	-0.0024757	657	43	1.2279087	0.025243282	1.2263893	250.68913	0	5.1536255						91	7	2	NaN	NaN	NaN	0.84887	1	3347	3347		0.32989	0	1	6157.6	+		7131	11169	4101	4193	5704	5704					-0.04454315822829358
GACFAKGG	8	Unmodified						0	0	0			REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.329021	709.321745	1.0783	0.00076592	8.3426	0.005926	9.4208	0.0066919	710.3350163899792	32.924	0.14478	32.921	32.873	33.018	-0.0024757	657	43	1.2279087	0.025243282	1.2263893	250.68913		5.1536255	-0.0017764	0.00096182	-0.00075972	NaN	0.32989	91	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6157.6	+		7132	11169	4101	4193							-0.04454315822829358
GACFGCSG	8	Unmodified	_GACFGCSG_					0	0	0		ENST00000317907.8_1_2:32853322-32853403:+|nuORF	ENST00000317907.8_1_2:32853322-32853403:+|nuORF	ENST00000317907.8_1_2:32853322-32853403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.2381573932001	1	701.238157	700.230881	3.1596	0.0022156	-12.286	-0.0086151	-9.126	-0.0063995	701.2309234849697	17.618	0.047977	17.604	17.58	17.628	-0.013786	1086	22	0.9680805	0.012817621	0.9665611	197.69145	0	2.6174622						28	3	2	NaN	NaN	NaN	0.84692	1	3160	3160		1.4396	0.19772	1	1350.3			7133	6472	4102	4194	5705	5705					-0.13122527862606148
GADPNATTL	9	Unmodified	_GADPNATTL_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4155877119	1	859.415588	858.408311	2.1686	0.0018637	-0.87589	-0.00075276	1.2927	0.001111	859.4149094239306	17.165	0.26386	17.165	17.093	17.357	0	477	106	1.3357477	0.06270826	1.3357477	271.8066	0	12.760315						413	12	3	NaN	NaN	NaN	0.11656	1	5512	5512		33.425	5.6365	1	43277			7134	2004	4103	4195	5706	5706					-0.026556577872838716
GADPNATTL	9	Unmodified	_GADPNATTL_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.4155877119	1	859.415588	858.408311	1.5997	0.0013748	-0.13771	-0.00011835	1.462	0.0012565	859.4157505606515	17.162	0.26389	17.149	17.1	17.364	-0.013569	474	97	1.3375392	0.05733645	1.3360198	272.17114	0	11.667145						392	12	3	NaN	NaN	NaN	0.015029	1	5378	5378		78.289	31.154	1	39263			7135	2004	4103	4195	5707	5707					-0.026556577872838716
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.3873240509001	1	906.387324	905.380048	2.6294	0.0023833	-1.1156	-0.0010111	1.5139	0.0013722	906.3869573339731	18.412	0.23989	18.412	18.364	18.604	0	417	76	1.3715409	0.04470098	1.3715409	278.86166	0	9.088623						432	11	3	NaN	NaN	NaN	0.021105	1	6167	6167		70.6	20.767	1	65200			7136	1091	4104	4196	5708	5708					-0.07642723758863212
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.3873240509001	1	906.387324	905.380048	2.599	0.0023557	-0.79081	-0.00071678	1.8082	0.0016389	906.386697632698	18.41	0.24005	18.396	18.348	18.588	-0.013948	414	76	1.3733286	0.04469633	1.3718091	279.22513	0	9.0876465						415	11	3	NaN	NaN	NaN	0.023828	1	6045	6045		67.154	39.365	1	64477			7137	1091	4104	4196	5709	5709					-0.07642723758863212
GADPSTVEM	9	Oxidation (M)	_GADPSTVEM(Oxidation (M))_		GADPSTVEM(1)		GADPSTVEM(73)	0	0	1		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.3822386730002	1	922.382239	921.374962	2.0837	0.001922	-0.70382	-0.00064919	1.3799	0.0012728	922.3819542369474	14.141	0.26425	14.141	14.069	14.333	0	390	109	1.3876231	0.06435239	1.3876231	282.05814	0	13.080719						705	12	3	NaN	NaN	NaN	0.019103	1	6426	6426		73.133	35.831	1	88189			7138	1091	4104	4197	5710	5710		118			-0.08887027621483412
GADPSTVEM	9	Oxidation (M)	_GADPSTVEM(Oxidation (M))_		GADPSTVEM(1)		GADPSTVEM(58)	0	0	1		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.3822386730002	1	922.382239	921.374962	1.2759	0.0011769	0.24857	0.00022928	1.5245	0.0014062	922.3823582118522	14.141	0.23967	14.13	14.034	14.274	-0.010673	387	112	1.389409	0.06614339	1.3878895	282.42117	0	13.444794						569	11	2	NaN	NaN	NaN	0.030669	1	6303	6303		58.235	30.447	1	84068			7139	1091	4104	4197	5711	5711		118			-0.08887027621483412
GAEAEHGAE	9	Unmodified	_GAEAEHGAE_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.3588011145	1	870.358801	869.351525	1.1972	0.001042	8.6179	0.0075007	9.8152	0.0085427	870.3660053562345	28.99	0.38613	28.982	28.91	29.296	-0.0077229	453	151	1.3500742	0.08954048	1.3485547	274.6673	0	18.216644						833	17	4	NaN	NaN	NaN	0.20577	1	5512	5512		24.961	3.126	1	172420	+		7140	10035	4105	4198	5712	5712					-0.08837705343808011
GAEAEHGAE	9	Unmodified						0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	870.358801	869.351525	1.1972	0.001042	8.6179	0.0075007	9.8152	0.0085427	870.3660053562345	28.99	0.38613	28.982	28.91	29.296	-0.0077229	453	151	1.3500742	0.08954048	1.3485547	274.6673		18.216644	0.0078213	6.0171E-05	-0.00075972	NaN	24.961	833	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172420	+		7141	10035	4105	4198							-0.08837705343808011
GAEGPDGP	8	Unmodified	_GAEGPDGP_					0	0	0			REV__ENSG00000142156|ENST00000361866|COL6A1	REV__ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.15084320515	2	350.150843	698.287133	1.9093	0.00066853	2.5729	0.00090091	4.4822	0.0015694	350.15174135532294	27.857	0.09654	27.857	27.833	27.929	0	1518	28	0.7023569	0.016734898	0.7023569	286.86346	0	6.835022						46	5	2	NaN	NaN	NaN	0.84727	1	3185	3185		1.2418	0	1	2908.7	+		7142	9838	4106	4199	5713	5713					-0.07407860429941593
GAEGPDGP	8	Unmodified						0	0	0			REV__ENSG00000142156|ENST00000361866|COL6A1	REV__ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	350.150843	698.287133	1.9093	0.00066853	2.5729	0.00090091	4.4822	0.0015694	350.15174135532294	27.857	0.09654	27.857	27.833	27.929	0	1518	28	0.7023569	0.016734898	0.7023569	286.86346		6.835022	0	0	0	NaN	1.2418	46	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2908.7	+		7143	9838	4106	4199							-0.07407860429941593
GAFKQPQH	8	Unmodified	_GAFKQPQH_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.73795140100003	2	456.737951	911.46135	1.8229	0.0008326	6.9696	0.0031833	8.7925	0.0040159	456.74041522696416	20.887	0.048246	20.873	20.873	20.921	-0.014088	1452	31	0.74322224	0.018552959	0.7417028	302.18866	0	7.543518						33	3	2	NaN	NaN	NaN	0.8439	1	6129	6129		3.1533	0.69183	1	2200.6	+		7144	10734	4107	4200	5714	5714					0.0020776478604602744
GAGADYGA	8	Unmodified	_GAGADYGA_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.14556086199997	2	341.145561	680.276569	1.6826	0.00057403	2.5383	0.00086592	4.2209	0.0014399	341.14662721717946	26.866	0.1207	26.856	26.832	26.952	-0.010645	1536	43	0.69119483	0.02605325	0.6896754	282.44785	0	10.646332						72	6	2	NaN	NaN	NaN	0.84692	1	2758	2758		1.4396	0	1	6696.6	+		7145	9679	4108	4201	5715	5715					-0.07635843084381122
GAGADYGA	8	Unmodified						0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	341.145561	680.276569	1.6826	0.00057403	2.5383	0.00086592	4.2209	0.0014399	341.14662721717946	26.866	0.1207	26.856	26.832	26.952	-0.010645	1536	43	0.69119483	0.02605325	0.6896754	282.44785		10.646332	-0.017803	-0.00066061	-0.00075972	NaN	1.4396	72	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6696.6	+		7146	9679	4108	4201							-0.07635843084381122
GAGALPLL	8	Unmodified	_GAGALPLL_					0	0	0			REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	REV__ENST00000325167.9_1_17:78973043-78973379:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4399519689001	1	711.439952	710.432676	0.83853	0.00059657	-6.4641	-0.0045988	-5.6256	-0.0040023	711.435284232703	27.518	0.19306	27.508	27.46	27.653	-0.009552	597	55	1.2639319	0.032386184	1.2624124	258.03604	0	6.6117706						217	9	3	NaN	NaN	NaN	0.83849	1	3383	3383		4.0537	2.3833	1	25756	+		7147	11734	4109	4202	5716	5716					0.06587647156902676
GAGCAAPL	8	Unmodified	_GAGCAAPL_					0	0	0			REV__ENST00000312579.3_1_11:65658118-65658181:+|nuORF	REV__ENST00000312579.3_1_11:65658118-65658181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3181222736999	1	659.318122	658.310846	-0.35021	-0.0002309	-2.5456	-0.0016784	-2.8958	-0.0019093	659.3165033215859	48.353	0.38343	48.358	48.262	48.645	0.004818	789	64	1.1483859	0.03804159	1.1468664	234.79771	0	7.777939						344	17	2	NaN	NaN	NaN	0.84651	1	2156	2156		1.6704	0	1	48138	+		7148	11696	4110	4203	5717	5717					-0.03197718197134236
GAGFLYPG	8	Unmodified	_GAGFLYPG_					0	0	0			REV__nc|ENSG00000141376|Q9H6U6|BCAS3	REV__nc|ENSG00000141376|Q9H6U6|BCAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.1975964325	2	391.197596	780.38064	1.2499	0.00048894	-8.8285	-0.0034537	-7.5786	-0.0029647	391.19406232084674	28.266	0.12071	28.257	28.185	28.305	-0.0089779	1407	40	0.77102906	0.02407837	0.7695096	314.2752	0	9.814453						84	6	2	NaN	NaN	NaN	0.83849	1	4413	4413		4.0537	0	1	7869.1	+		7149	13131	4111	4204	5718	5718					-0.01833516256851908
GAGFLYPG	8	Unmodified						0	0	0			REV__nc|ENSG00000141376|Q9H6U6|BCAS3	REV__nc|ENSG00000141376|Q9H6U6|BCAS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	391.197596	780.38064	1.5098	0.00059062	-8.3961	-0.0032845	-6.8863	-0.0026939	391.1944853245523	28.194	0.14479	28.194	28.098	28.243	0	1407	46	0.77102906	0.027788818	0.77102906	314.2752		11.326843	-0.031353	0.00010559	0.00075972	NaN	4.0537	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10873	+		7150	13131	4111	4204							-0.01833516256851908
GAGFLYPG	8	Unmodified						0	0	0			REV__nc|ENSG00000141376|Q9H6U6|BCAS3	REV__nc|ENSG00000141376|Q9H6U6|BCAS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	391.197596	780.38064	1.2499	0.00048894	-8.8285	-0.0034537	-7.5786	-0.0029647	391.19406232084674	28.266	0.12071	28.257	28.185	28.305	-0.0089779	1407	40	0.77102906	0.02407837	0.7695096	314.2752		9.814453	0.031353	-0.00023273	-0.00075972	NaN	4.0537	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7869.1	+		7151	13131	4111	4204							-0.01833516256851908
GAGGAFQV	8	Unmodified	_GAGGAFQV_					0	0	0		MAST1|p.E640Q|1|0.18|ENSG00000105613|chr19:12865991-12865991|G/C|missense_variant	MAST1|p.E640Q|1|0.18|ENSG00000105613|chr19:12865991-12865991|G/C|missense_variant	MAST1|p.E640Q|1|0.18|ENSG00000105613|chr19:12865991-12865991|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3518652431001	1	706.351865	705.344589	1.2522	0.0008845	-9.2235	-0.006515	-7.9713	-0.0056305	706.345359620287	27.881	0.14478	27.881	27.857	28.001	0	582	46	1.2729256	0.026978374	1.2729256	259.90762	0	5.508484						109	7	2	NaN	NaN	NaN	0.84692	1	3310	3310		1.4396	0.19772	1	7312.2			7152	7873	4112	4205	5719	5719					-0.019869734337135014
GAGGDTFI	8	Unmodified	_GAGGDTFI_					0	0	0		ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3464455141999	1	737.346446	736.339169	1.9984	0.0014735	-0.058127	-4.286E-05	1.9403	0.0014307	737.3468483363856	18.197	0.19183	18.197	18.149	18.34	0	603	64	1.2603331	0.037806153	1.2603331	257.12997	0	7.7131042						173	9	2	NaN	NaN	NaN	0.80071	1	3844	3844		9.1232	3.0329	1	15770			7153	6757	4113	4206	5720	5720					-0.0395469701620641
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	0.74275	0.00048974	-4.8575	-0.0032028	-4.1148	-0.0027131	659.3540937158577	33.456	0.28947	33.456	33.359	33.648	0	756	103	1.1683017	0.06151533	1.1683017	238.8694	0	12.577332						274	13	2	NaN	NaN	NaN	0.84887	1	2240	2240		0.32989	0	1	40683	+		7154	12061	4114	4207	5721	5721					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.772	0.0011684	-3.0862	-0.0020349	-1.3142	-0.00086651	659.3561390671341	22.814	0.21705	22.814	22.742	22.959	0	801	160	1.1411378	0.09587622	1.1411378	233.31552	0	19.602722						566	10	2	NaN	NaN	NaN	0.84887	1	2245	2245		0.32989	0	1	45076	+		7155	12061	4114	4207	5722	5722					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.3247	0.00087343	-2.5955	-0.0017114	-1.2708	-0.00083793	659.3560857575611	24.068	0.16895	24.068	24.044	24.213	0	765	154	1.1628724	0.09229779	1.1628724	237.75932	0	18.871078						487	8	2	NaN	NaN	NaN	0.84887	1	2246	2246		0.32989	0	1	45856	+		7156	12061	4114	4207	5723	5723					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.2486	0.00082325	-1.9541	-0.0012884	-0.7055	-0.00046518	659.356881779751	20.453	0.19238	20.453	20.405	20.597	0	759	100	1.1664921	0.059728384	1.1664921	238.4994	0	12.21199						339	9	2	NaN	NaN	NaN	0.84887	1	2248	2248		0.32989	0	1	40126	+		7157	12061	4114	4207	5724	5724					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.8422	0.0012147	-2.4225	-0.0015973	-0.58026	-0.0003826	659.3564657262907	25.684	0.024151	25.684	25.66	25.684	0	798	142	1.1429502	0.08504963	1.1429502	233.68605	0	17.389114						167	2	2	NaN	NaN	NaN	0.84887	1	2249	2249		0.32989	0	1	19989	+		7158	12061	4114	4207	5725	5725					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	0.85332	0.00056265	-1.1439	-0.00075427	-0.29062	-0.00019162	659.357569781441	31.573	0.33792	31.573	31.452	31.79	0	807	112	1.1375128	0.06701136	1.1375128	232.57431	0	13.70105						587	15	2	NaN	NaN	NaN	0.84727	1	2250	2250		1.2418	0	1	61476	+		7159	12061	4114	4207	5726	5726					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.7291	0.0011401	-1.858	-0.0012251	-0.1289	-8.4989E-05	659.3567397759604	22.236	0.2412	22.236	22.163	22.405	0	729	142	1.184579	0.08506787	1.184579	242.19743	0	17.392853						802	11	3	NaN	NaN	NaN	0.84887	1	2251	2251		0.32989	0	1	91559	+		7160	12061	4114	4207	5727	5727					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.4109	0.0009303	-3.3925	-0.0022369	-1.9816	-0.0013066	659.3560736645877	24.212	0.072397	24.199	24.175	24.248	-0.012749	756	133	1.1683017	0.07962513	1.1667823	238.8694	0	16.280045						233	4	2	NaN	NaN	NaN	0.84887	1	2159	2159		0.32989	0	1	19477	+		7161	12061	4114	4207	5728	5728					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.3072	0.00086191	-2.8165	-0.0018571	-1.5093	-0.0009952	659.3564150036782	22.5	0.16881	22.486	22.438	22.607	-0.013731	768	136	1.1610622	0.08142173	1.1595428	237.38924	0	16.647385						369	8	2	NaN	NaN	NaN	0.84887	1	2160	2160		0.32989	0	1	37748	+		7162	12061	4114	4207	5729	5729					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.3815	0.0009109	-2.8001	-0.0018463	-1.4187	-0.0009354	659.3562665569648	24.84	0.096491	24.827	24.827	24.924	-0.012392	780	133	1.1538198	0.07965076	1.1523004	235.90843	0	16.285294						274	5	2	NaN	NaN	NaN	0.84887	1	2161	2161		0.32989	0	1	24667	+		7163	12061	4114	4207	5730	5730					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.3731	0.00090535	-2.7777	-0.0018315	-1.4046	-0.00092613	659.3561549134874	24.574	0.19296	24.562	24.489	24.682	-0.012392	801	169	1.1411378	0.10135198	1.1396184	233.3155	0	20.72229						625	9	2	NaN	NaN	NaN	0.84887	1	2163	2163		0.32989	0	1	66460	+		7164	12061	4114	4207	5731	5731					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.3345	0.00087991	-2.0963	-0.0013822	-0.76183	-0.00050232	659.3570967120015	20.453	0.19261	20.439	20.367	20.559	-0.014143	759	106	1.1664921	0.0633415	1.1649727	238.4994	0	12.950729						365	9	2	NaN	NaN	NaN	0.84887	1	2165	2165		0.32989	0	1	42260	+		7165	12061	4114	4207	5732	5732					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	2.0199	0.0013318	-2.6096	-0.0017207	-0.58969	-0.00038882	659.3564517358545	25.684	0.096466	25.672	25.6	25.696	-0.0116	795	148	1.1447623	0.08867824	1.1432428	234.05655	0	18.131027						343	5	2	NaN	NaN	NaN	0.84887	1	2168	2168		0.32989	0	1	45214	+		7166	12061	4114	4207	5733	5733					0.008229645176470513
GAGGGKGR	8	Unmodified	_GAGGGKGR_					0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.1282	0.00074391	-1.5984	-0.0010539	-0.47021	-0.00031004	659.3575211936497	29.642	0.14478	29.635	29.61	29.755	-0.0070648	795	145	1.1447623	0.08687317	1.1432428	234.05653	0	17.761963						293	7	2	NaN	NaN	NaN	0.84887	1	2170	2170		0.32989	0	1	30445	+		7167	12061	4114	4207	5734	5734					0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	0.74275	0.00048974	-4.8575	-0.0032028	-4.1148	-0.0027131	659.3540937158577	33.456	0.28947	33.456	33.359	33.648	0	756	103	1.1683017	0.06151533	1.1683017	238.8694		12.577332	0	0	0	NaN	0.32989	274	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40683	+		7168	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.3247	0.00087343	-2.5955	-0.0017114	-1.2708	-0.00083793	659.3560857575611	24.068	0.16895	24.068	24.044	24.213	0	765	154	1.1628724	0.09229779	1.1628724	237.75932		18.871078	-0.065893	0.00020637	-0.0019549	NaN	0.32989	487	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45856	+		7169	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.772	0.0011684	-3.0862	-0.0020349	-1.3142	-0.00086651	659.3561390671341	22.814	0.21705	22.814	22.742	22.959	0	801	160	1.1411378	0.09587622	1.1411378	233.31552		19.602722	0.055296	-0.00016069	-0.011917	NaN	0.32989	566	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45076	+		7170	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.7291	0.0011401	-1.858	-0.0012251	-0.1289	-8.4989E-05	659.3567397759604	22.236	0.2412	22.236	22.163	22.405	0	729	142	1.184579	0.08506787	1.184579	242.19743		17.392853	-0.12536	0.00021888	0.012518	NaN	0.32989	802	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91559	+		7171	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.2486	0.00082325	-1.9541	-0.0012884	-0.7055	-0.00046518	659.356881779751	20.453	0.19238	20.453	20.405	20.597	0	759	100	1.1664921	0.059728384	1.1664921	238.4994		12.21199	0.0069811	5.6938E-05	0.00075972	NaN	0.32989	339	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40126	+		7172	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.8422	0.0012147	-2.4225	-0.0015973	-0.58026	-0.0003826	659.3564657262907	25.684	0.024151	25.684	25.66	25.684	0	798	142	1.1429502	0.08504963	1.1429502	233.68605		17.389114	-0.090581	-0.00047054	-0.01463	NaN	0.32989	167	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19989	+		7173	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.4109	0.0009303	-3.3925	-0.0022369	-1.9816	-0.0013066	659.3560736645877	24.212	0.072397	24.199	24.175	24.248	-0.012749	756	133	1.1683017	0.07962513	1.1667823	238.8694		16.280045	0.065893	-0.00031914	0.0019549	NaN	0.32989	233	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19477	+		7174	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.4298	0.00094277	-2.1594	-0.0014238	-0.72957	-0.00048105	659.3567651196702	22.717	0.04826	22.704	22.655	22.704	-0.01354	759	148	1.1664921	0.08864021	1.1649727	238.4994		18.12326	-0.055296	0.00045042	0.011917	NaN	0.32989	157	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11873	+		7175	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.3072	0.00086191	-2.8165	-0.0018571	-1.5093	-0.0009952	659.3564150036782	22.5	0.16881	22.486	22.438	22.607	-0.013731	768	136	1.1610622	0.08142173	1.1595428	237.38924		16.647385	0.12536	-0.00041314	-0.012518	NaN	0.32989	369	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37748	+		7176	12061	4114	4207							0.008229645176470513
GAGGGKGR	8	Unmodified						0	0	0			REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	REV__ENST00000409860.1_2_4:2043785-2043833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.3345	0.00087991	-2.0963	-0.0013822	-0.76183	-0.00050232	659.3570967120015	20.453	0.19261	20.439	20.367	20.559	-0.014143	759	106	1.1664921	0.0633415	1.1649727	238.4994		12.950729	-0.0069811	-3.6864E-05	-0.00075972	NaN	0.32989	365	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42260	+		7177	12061	4114	4207							0.008229645176470513
GAGGSAHL	8	Unmodified	_GAGGSAHL_					0	0	0		ENST00000588224.1_1_10:118425062-118429712:-|nuORF	ENST00000588224.1_1_10:118425062-118429712:-|nuORF	ENST00000588224.1_1_10:118425062-118429712:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.331464152	1	669.331464	668.324188	0.91401	0.00061178	-8.7535	-0.005859	-7.8395	-0.0052472	669.3257091842527	41.281	0.24051	41.281	41.089	41.329	0	759	73	1.1664921	0.04342723	1.1664921	238.42702	0	8.876373						288	11	2	NaN	NaN	NaN	0.84207	1	2549	2549		3.5732	2.1337	1	27021			7178	7712	4115	4208	5735	5735					-0.023241440935294122
GAGGSAHL	8	Unmodified						0	0	0		ENST00000588224.1_1_10:118425062-118429712:-|nuORF	ENST00000588224.1_1_10:118425062-118429712:-|nuORF	ENST00000588224.1_1_10:118425062-118429712:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	0.86655	0.00058001	-7.9526	-0.005323	-7.0861	-0.0047429	669.3258954874243	41.352	0.31307	41.36	41.095	41.408	0.0082588	762	79	1.1646824	0.047056317	1.163163	238.0571		9.618134	0.039496	0.00028954	-0.0016646	NaN	3.5732	313	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29873			7179	7712	4115	4208							-0.023241440935294122
GAGHASFT	8	Unmodified	_GAGHASFT_					0	0	0		CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant;ENST00000502249.6_1_4:119401524-119435218:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant	CEP170|p.L346Gfs*8|1|0.62|ENSG00000143702|chr1:243191086-243191090|CATAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	747.3420288383	1	747.342029	746.334752	0.94995	0.00070994	-9.8074	-0.0073295	-8.8574	-0.0066195	747.3345855812181	31.042	0.16892	31.042	30.994	31.163	0	600	91	1.2621325	0.053994417	1.2621325	257.43414	0	11.013107						324	8	3	NaN	NaN	NaN	0.77489	1	3991	3991		12.588	2.5363	1	54710			7180	96	4116	4209	5736	5736					-0.04856161439090556
GAGHSAGL	8	Unmodified	_GAGHSAGL_					0	0	0			REV__ENST00000241502.8_1_3:197476625-197476913:+|nuORF	REV__ENST00000241502.8_1_3:197476625-197476913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.331464152	1	669.331464	668.324188	0.89076	0.00059621	-8.5532	-0.0057249	-7.6625	-0.0051287	669.3260310711205	39.694	0.28917	39.694	39.694	39.983	0	768	91	1.1610622	0.05430734	1.1610622	237.31717	0	11.100235						508	13	3	NaN	NaN	NaN	0.84692	1	2550	2550		1.4396	0	1	80770	+		7181	11495	4117	4210	5737	5737					-0.023241440935294122
GAGHSAGL	8	Unmodified	_GAGHSAGL_					0	0	0			REV__ENST00000241502.8_1_3:197476625-197476913:+|nuORF	REV__ENST00000241502.8_1_3:197476625-197476913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.331464152	1	669.331464	668.324188	0.86655	0.00058001	-7.9526	-0.005323	-7.0861	-0.0047429	669.3258954874243	41.352	0.31307	41.36	41.095	41.408	0.0082588	762	79	1.1646824	0.047056317	1.163163	238.0571	0	9.618134						313	14	2	NaN	NaN	NaN	0.84887	1	2460	2460		0.32989	0	1	29873	+		7182	11495	4117	4210	5738	5738					-0.023241440935294122
GAGLFGVG	8	Unmodified	_GAGLFGVG_					0	0	0			REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3617016479002	1	677.361702	676.354425	1.0919	0.00073964	6.3513	0.0043021	7.4432	0.0050417	677.3641169760466	24.43	0.09651	24.43	24.357	24.454	0	747	70	1.1737292	0.041610956	1.1737292	239.84904	0	8.503128						94	5	3	NaN	NaN	NaN	0.84651	1	2763	2763		1.6704	0	1	4954.5	+		7183	13604	4118	4211	5739	5739					0.003302145716816085
GAGLFGVG	8	Unmodified						0	0	0			REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.361702	676.354425	1.0919	0.00073964	6.3513	0.0043021	7.4432	0.0050417	677.3641169760466	24.43	0.09651	24.43	24.357	24.454	0	747	70	1.1737292	0.041610956	1.1737292	239.84904		8.503128	-0.05401	0.00010703	0.012526	NaN	1.6704	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4954.5	+		7184	13604	4118	4211							0.003302145716816085
GAGLFGVG	8	Unmodified						0	0	0			REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	REV__tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	677.361702	676.354425	1.064	0.00072069	6.1109	0.0041393	7.1749	0.00486	677.3650399646164	24.55	0.12067	24.538	24.489	24.61	-0.012394	786	100	1.1501974	0.059728384	1.148678	235.04036		12.205368	0.05401	-5.5748E-05	-0.012526	NaN	1.6704	193	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13167	+		7185	13604	4118	4211							0.003302145716816085
GAGLLAAC	8	Unmodified	_GAGLLAAC_					0	0	0		ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021	1	675.349422	674.342146	1.2585	0.0008499	2.8142	0.0019006	4.0727	0.0027505	675.3511767432378	23.947	0.048214	23.947	23.899	23.947	0	747	145	1.1737292	0.086761475	1.1737292	239.86325	0	17.730576						173	3	2	NaN	NaN	NaN	0.84651	1	2709	2709		1.6704	0.59834	1	12331			7186	4238	4119	4212	5740	5740					-0.008051451630308293
GAGLLAAC	8	Unmodified						0	0	0		ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.2621	0.00085235	3.5365	0.0023884	4.7986	0.0032407	675.3517112755935	23.947	0.07233	23.934	23.886	23.958	-0.013048	750	121	1.1719203	0.07234001	1.1704009	239.49356		14.783386	-0.0066443	0.00021547	-0.0016642	NaN	1.6704	129	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10616			7187	4238	4119	4212							-0.008051451630308293
GAGLLHSP	8	Unmodified	_GAGLLHSP_					0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.409714473	1	751.409714	750.402438	1.299	0.00097606	-10.459	-0.0078591	-9.1601	-0.006883	751.4008532188815	36.181	0.12062	36.181	36.109	36.229	0	642	49	1.2369217	0.028833985	1.2369217	252.26727	0	5.8806						105	6	2	NaN	NaN	NaN	0.84207	1	4059	4059		3.5732	2.1337	1	8606.5			7188	373	4120	4213	5741	5741					0.017252884917070332
GAGLLHSP	8	Unmodified						0	0	0		nc|ENSG00000008323|Q3KR16-2|PLEKHG6;ENSG00000008323|ENST00000684764|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	nc|ENSG00000008323|Q3KR16-2|PLEKHG6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.409714	750.402438	1.8198	0.0013674	-10.746	-0.0080747	-8.9262	-0.0067072	751.4010963335096	36.155	0.096401	36.157	36.108	36.205	0.0011024	639	40	1.2387238	0.023426294	1.2372043	252.6348		4.7777405	-0.012327	-0.00012551	0.00014129	NaN	3.5732	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6554.8			7189	373	4120	4213							0.017252884917070332
GAGPADVY	8	Unmodified	_GAGPADVY_					0	0	0		XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant;ENST00000509268.1_1_5:82400738-82554497:+|nuORF;nc|ENSG00000152422|Q13426-3|XRCC4;ENST00000542685.5_1_5:82400738-82606644:+|nuORF;ENSG00000152422|ENST00000396027|XRCC4;nc|ENSG00000152422|Q13426|XRCC4	XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3464455142	1	749.346446	748.339169	1.6564	0.0012412	6.5355	0.0048973	8.1919	0.0061385	749.3516714013716	22.549	0.16882	22.549	22.501	22.67	0	591	79	1.26753	0.04675007	1.26753	258.52246	0	9.535034						219	8	2	NaN	NaN	NaN	0.75682	1	4021	4021		15.013	4.9613	1	16919			7190	3773	4121	4214	5742	5742					-0.045066970161883546
GAGPADVY	8	Unmodified	_GAGPADVY_					0	0	0		XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant;ENST00000509268.1_1_5:82400738-82554497:+|nuORF;nc|ENSG00000152422|Q13426-3|XRCC4;ENST00000542685.5_1_5:82400738-82606644:+|nuORF;ENSG00000152422|ENST00000396027|XRCC4;nc|ENSG00000152422|Q13426|XRCC4	XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3464455142	1	749.346446	748.339169	1.4888	0.0011156	6.051	0.0045343	7.5398	0.0056499	749.3507304421598	22.573	0.14472	22.559	22.511	22.655	-0.01354	591	85	1.26753	0.050346255	1.2660105	258.52246	0	10.268509						229	7	2	NaN	NaN	NaN	0.75682	1	3942	3942		15.013	1.2758	1	17267			7191	3773	4121	4214	5743	5743					-0.045066970161883546
GAGPCPDS	8	Unmodified	_GAGPCPDS_					0	0	0		ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.2715660116	1	703.271566	702.26429	1.5693	0.0011037	0.089513	6.2952E-05	1.6588	0.0011666	703.2719624073599	26.215	0.048275	26.204	26.18	26.228	-0.011137	717	61	1.1918083	0.036131263	1.1902889	243.36528	0	7.377945						96	3	2	NaN	NaN	NaN	0.84876	1	3193	3193		0.39566	0	1	9262.3			7192	5020	4122	4215	5744	5744					-0.09875202819068818
GAGPEDPSL	9	Unmodified	_GAGPEDPSL_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.3890386104	1	842.389039	841.381762	2.2938	0.0019323	0.56593	0.00047673	2.8597	0.002409	842.38924391374	18.46	0.16786	18.46	18.436	18.604	0	498	43	1.3232021	0.02510345	1.3232021	269.33963	0	5.109833						98	8	2	NaN	NaN	NaN	0.030669	1	5280	5280		58.235	21.649	1	8995.3			7193	4122	4123	4216	5745	5745					-0.0452734667861705
GAGPIAHA	8	Unmodified	_GAGPIAHA_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3678496583	1	693.36785	692.360573	1.7512	0.0012142	-7.2857	-0.0050517	-5.5345	-0.0038375	693.3631771840759	30.125	0.14482	30.125	30.077	30.222	0	714	49	1.1936152	0.028908134	1.1936152	243.80093	0	5.904587						127	7	2	NaN	NaN	NaN	0.84876	1	3089	3089		0.39566	0	1	8588.6	+		7194	12957	4124	4217	5746	5746					0.0020873280317346143
GAGPIAHA	8	Unmodified	_GAGPIAHA_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3678496583	1	693.36785	692.360573	1.1158	0.00077365	-6.0677	-0.0042072	-4.9519	-0.0034335	693.3637683763548	24.815	0.21714	24.803	24.755	24.972	-0.012394	717	67	1.1918083	0.039765716	1.1902889	243.43187	0	8.122299						169	10	2	NaN	NaN	NaN	0.84876	1	3022	3022		0.39566	0	1	16387	+		7195	12957	4124	4217	5747	5747					0.0020873280317346143
GAGPIAHA	8	Unmodified						0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.36785	692.360573	1.7512	0.0012142	-7.2857	-0.0050517	-5.5345	-0.0038375	693.3631771840759	30.125	0.14482	30.125	30.077	30.222	0	714	49	1.1936152	0.028908134	1.1936152	243.80093		5.904587	0	0	0	NaN	0.39566	127	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8588.6	+		7196	12957	4124	4217							0.0020873280317346143
GAGPRSEPA	9	Unmodified	_GAGPRSEPA_					0	0	0		ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4162564139	1	841.416256	840.40898	2.3404	0.0019692	5.4768	0.0046082	7.8172	0.0065775	841.4211535833452	22.573	0.24123	22.573	22.573	22.814	0	414	304	1.3733286	0.18124914	1.3733286	279.54813	0	36.89421						556	11	2	NaN	NaN	NaN	0.25448	1	5272	5272		21.835	4.036	1	556360			7197	4952	4125	4218	5748	5748					-0.01760818347577242
GAGPRSEPA	9	Unmodified						0	0	0		ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	ENSG00000174586|ENST00000311044|ZNF497	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	841.416256	840.40898	1.4508	0.0012208	4.7117	0.0039645	6.1625	0.0051852	841.420410900621	22.621	0.24114	22.607	22.559	22.8	-0.01354	414	211	1.3733286	0.12543702	1.3718091	279.54813		25.533325	0.017074	-0.00033211	-0.00075972	NaN	21.835	677	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262170			7198	4952	4125	4218							-0.01760818347577242
GAGPSPTF	8	Unmodified	_GAGPSPTF_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3515308921001	1	733.351531	732.344254	0.7662	0.00056189	5.5965	0.0041042	6.3627	0.0046661	733.3555853268462	31.187	0.31373	31.187	31.139	31.452	0	609	97	1.2567334	0.057618618	1.2567334	256.42114	0	11.756378						408	14	3	NaN	NaN	NaN	0.76633	1	3788	3788		13.737	1.1492	1	60443			7199	5173	4126	4219	5749	5749					-0.03262393153568155
GAGPSPTF	8	Unmodified						0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	733.351531	732.344254	1.1546	0.00084671	6.0355	0.0044261	7.1901	0.0052729	733.3560355365287	31.186	0.26543	31.181	31.133	31.398	-0.0050716	609	109	1.2567334	0.06484866	1.255214	256.42114		13.231567	-0.0030526	0.00014277	-0.00075972	NaN	13.737	407	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61725			7200	5173	4126	4219							-0.03262393153568155
GAGRGGGK	8	Unmodified	_GAGRGGGK_					0	0	0		ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENST00000531840.1_1_11:2416360-2416819:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.3099	0.00086369	-2.9746	-0.0019614	-1.6648	-0.0010977	659.3566197388574	24.791	0.12066	24.791	24.743	24.864	0	771	136	1.1592519	0.08143926	1.1592519	237.01909	0	16.65094						293	6	2	NaN	NaN	NaN	0.84727	1	2241	2241		1.2418	0	1	24101			7201	7452	4127	4220	5750	5750					0.0082296451765842
GAGRGGGK	8	Unmodified						0	0	0		ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENST00000531840.1_1_11:2416360-2416819:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.3815	0.0009109	-2.8001	-0.0018463	-1.4187	-0.0009354	659.3562665569648	24.84	0.096491	24.827	24.827	24.924	-0.012392	780	133	1.1538198	0.07965076	1.1523004	235.90843		16.285294	0.017853	5.3272E-05	-0.0034758	NaN	1.2418	274	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24667			7202	7452	4127	4220							0.0082296451765842
GAGRGKAA	8	Unmodified	_GAGRGKAA_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3896477328999	1	687.389648	686.382371	2.0947	0.0014399	-3.4777	-0.0023905	-1.383	-0.00095064	687.38704304999	48.091	0.45544	48.091	47.923	48.379	0	735	82	1.1809633	0.048847795	1.1809633	241.25742	0	9.97905						444	20	3	NaN	NaN	NaN	0.84887	1	2957	2957		0.32989	0	1	45318			7203	1182	4128	4221	5751	5751					0.026635375517344073
GAGRGKAA	8	Unmodified	_GAGRGKAA_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3896477328999	1	687.389648	686.382371	-0.31744	-0.0002182	-1.487	-0.0010222	-1.8045	-0.0012404	687.3888704343453	48.089	0.31163	48.096	47.952	48.263	0.0061035	735	79	1.1809633	0.047030926	1.1794438	241.25742	0	9.60791						438	14	3	NaN	NaN	NaN	0.84887	1	2879	2879		0.32989	0	1	48183			7204	1182	4128	4221	5752	5752					0.026635375517344073
GAGRGPPP	8	Unmodified	_GAGRGPPP_					0	0	0			REV__ENST00000373935.3_1_10:60027285-60027561:-|nuORF	REV__ENST00000373935.3_1_10:60027285-60027561:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.91553	0.00064854	-7.2777	-0.0051554	-6.3622	-0.0045068	708.3738041670031	32.875	0.3376	32.872	32.824	33.162	-0.0031052	714	91	1.1936152	0.054196835	1.1920958	243.7006	0	11.065384						534	15	4	NaN	NaN	NaN	0.84692	1	3306	3306		1.4396	0	1	94721	+		7205	11927	4129	4222	5753	5753					0.006081351774582799
GAGRGPPP	8	Unmodified						0	0	0			REV__ENST00000373935.3_1_10:60027285-60027561:-|nuORF	REV__ENST00000373935.3_1_10:60027285-60027561:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.378749	707.371472	0.91553	0.00064854	-7.2777	-0.0051554	-6.3622	-0.0045068	708.3738041670031	32.875	0.3376	32.872	32.824	33.162	-0.0031052	714	91	1.1936152	0.054196835	1.1920958	243.7006		11.065384	-0.0020855	-2.2974E-05	-0.00075972	NaN	1.4396	534	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94721	+		7206	11927	4129	4222							0.006081351774582799
GAGRVRVH	8	Unmodified	_GAGRVRVH_					0	0	0			REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.4958441389001	1	851.495844	850.488568	0.67262	0.00057273	-10.246	-0.0087248	-9.5738	-0.0081521	851.4870019014892	35.722	0.14462	35.722	35.674	35.819	0.00052643	510	61	1.316029	0.035877228	1.3145095	267.83347	0	7.301605						143	7	3	NaN	NaN	NaN	0.84692	1	5261	5261		1.4396	0	1	11375	+		7207	12624	4130	4223	5754	5754					0.057342931170865086
GAGRVRVH	8	Unmodified						0	0	0			REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	851.495844	850.488568	1.2083	0.0010289	-10.509	-0.0089485	-9.3008	-0.0079196	851.4880018378906	35.723	0.12062	35.723	35.675	35.795	0	516	61	1.3124412	0.035877228	1.3124412	267.1033		7.301605	0.00046616	-0.00012221	-0.0010341	NaN	1.4396	170	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12171	+		7208	12624	4130	4223							0.057342931170865086
GAGRVRVH	8	Unmodified						0	0	0			REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.495844	850.488568	0.67262	0.00057273	-10.246	-0.0087248	-9.5738	-0.0081521	851.4870019014892	35.722	0.14462	35.722	35.674	35.819	0.00052643	510	61	1.316029	0.035877228	1.3145095	267.83347		7.301605	-0.00046616	0.00010151	0.0010341	NaN	1.4396	143	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11375	+		7209	12624	4130	4223							0.057342931170865086
GAGSAAEA	8	Unmodified	_GAGSAAEA_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.2838452573999	1	633.283845	632.276569	1.071	0.00067827	-7.5131	-0.0047579	-6.4421	-0.0040797	633.2790583173593	44.734	0.095829	44.745	44.721	44.817	0.011646	702	37	1.2008407	0.021669507	1.1993213	245.7282	0	4.4342346						50	5	2	NaN	NaN	NaN	0.84887	1	1441	1441		0.32989	0	1	2888.4	+		7210	8607	4131	4224	5755	5755					-0.05427843084385131
GAGSGKST	8	Unmodified	_GAGSGKST_					0	0	0			REV__ENST00000488149.5_1_3:182910742-182941939:-|nuORF	REV__ENST00000488149.5_1_3:182910742-182941939:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.3260444230999	1	664.326044	663.318768	2.0308	0.0013491	-5.3213	-0.0035351	-3.2904	-0.0021859	664.3232834554315	41.231	0.14452	41.239	41.167	41.311	0.0074959	765	43	1.1628724	0.025337934	1.161353	237.72311	0	5.179764						68	7	2	NaN	NaN	NaN	0.84897	1	2327	2327		0.27539	0	1	3220.5	+		7211	8499	4132	4225	5756	5756					-0.026358676760082744
GAGSRSGG	8	Unmodified	_GAGSRSGG_					0	0	0		ENST00000495397.1_1_1:161696010-161697100:+|nuORF	ENST00000495397.1_1_1:161696010-161697100:+|nuORF	ENST00000495397.1_1_1:161696010-161697100:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3059776830002	1	648.305978	647.298701	1.0084	0.00065375	2.122	0.0013757	3.1304	0.0020295	648.3074737562366	33.89	0.096519	33.89	33.817	33.914	0	1005	28	1.0174452	0.016431808	1.0174452	208.09772	0	3.3608093						56	5	2	NaN	NaN	NaN	0.84727	1	1991	1991		1.2418	0	1	3987.1			7212	7285	4133	4226	5757	5757					-0.03905618615942785
GAGVAATD	8	Unmodified	_GAGVAATD_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3151453857998	1	661.315145	660.307869	-0.083462	-5.5195E-05	-1.9596	-0.0012959	-2.043	-0.0013511	661.3136839731573	48.377	0.16772	48.382	48.334	48.502	0.004818	786	43	1.1501974	0.02535963	1.148678	235.15361	0	5.1847076						114	8	2	NaN	NaN	NaN	0.84887	1	2224	2224		0.32989	0	1	11412			7213	7741	4134	4227	5758	5758					-0.03587270050297775
GAGVALPK	8	Unmodified	_GAGVALPK_					0	0	0			REV__ENST00000491449.5_1_22:50658476-50664613:-|nuORF	REV__ENST00000491449.5_1_22:50658476-50664613:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.4352009419999	1	712.435201	711.427924	1.3369	0.00095243	-4.6902	-0.0033415	-3.3534	-0.0023891	712.4318860193996	27.422	0.072428	27.422	27.35	27.422	0	690	31	1.2080631	0.018051982	1.2080631	246.6237	0	3.6852875						41	4	2	NaN	NaN	NaN	0.84887	1	3458	3458		0.32989	0	1	2307	+		7214	8156	4135	4228	5759	5759					0.06066763014121079
GAGVHPAL	8	Unmodified	_GAGVHPAL_					0	0	0		ENST00000470335.1_1_22:20838156-20850080:-|nuORF	ENST00000470335.1_1_22:20838156-20850080:-|nuORF	ENST00000470335.1_1_22:20838156-20850080:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.2032131266499	2	361.203213	720.391873	1.3649	0.00049299	-5.1808	-0.0018713	-3.8159	-0.0013783	361.2013308640688	29.425	0.096523	29.425	29.377	29.474	0	1437	34	0.7524962	0.020400584	0.7524962	307.161	0	8.327301						79	5	2	NaN	NaN	NaN	0.83849	1	3597	3597		4.0537	2.3833	1	7593.5			7215	7145	4136	4229	5760	5760					0.020493058372608175
GAGVHTPA	8	Unmodified	_GAGVHTPA_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642803999	1	709.362764	708.355488	1.6393	0.0011629	-7.3871	-0.0052401	-5.7478	-0.0040773	709.3575921827481	18.844	0.21605	18.844	18.748	18.964	0	723	43	1.1881942	0.025302649	1.1881942	242.58737	0	5.165909						127	10	2	NaN	NaN	NaN	0.84207	1	3386	3386		3.5732	0	1	7574.1	+		7216	9976	4137	4230	5761	5761					-0.010355710594467382
GAGVHTPA	8	Unmodified	_GAGVHTPA_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3627642803999	1	709.362764	708.355488	1.7798	0.0012626	-5.5142	-0.0039116	-3.7344	-0.0026491	709.3585745040008	18.866	0.072124	18.852	18.828	18.9	-0.014059	726	40	1.1863867	0.023496628	1.1848673	242.21835	0	4.79718						66	4	2	NaN	NaN	NaN	0.84207	1	3328	3328		3.5732	0	1	4890.5	+		7217	9976	4137	4230	5762	5762					-0.010355710594467382
GAGVHTPA	8	Unmodified						0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.362764	708.355488	1.6393	0.0011629	-7.3871	-0.0052401	-5.7478	-0.0040773	709.3575921827481	18.844	0.21605	18.844	18.748	18.964	0	723	43	1.1881942	0.025302649	1.1881942	242.58737		5.165909	-0.0036464	-0.00046008	0.0016634	NaN	3.5732	127	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7574.1	+		7218	9976	4137	4230							-0.010355710594467382
GAGVHTPA	8	Unmodified						0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.362764	708.355488	1.7798	0.0012626	-5.5142	-0.0039116	-3.7344	-0.0026491	709.3585745040008	18.866	0.072124	18.852	18.828	18.9	-0.014059	726	40	1.1863867	0.023496628	1.1848673	242.21835		4.79718	0.0036464	0.00086845	-0.0016634	NaN	3.5732	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4890.5	+		7219	9976	4137	4230							-0.010355710594467382
GAHGPGPF	8	Unmodified	_GAHGPGPF_					0	0	0			REV__ENST00000485445.5_1_12:111082708-111085062:+|nuORF	REV__ENST00000485445.5_1_12:111082708-111085062:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.3521995941001	1	739.3522	738.344923	1.371	0.0010136	-0.91478	-0.00067635	0.45617	0.00033727	739.3515177960587	21.392	0.1685	21.392	21.32	21.488	0	582	52	1.2729256	0.030572295	1.2729256	259.68622	0	6.236969						163	8	2	NaN	NaN	NaN	0.84651	1	3888	3888		1.6704	1.2747	1	18268	+		7220	12418	4138	4231	5763	5763					-0.03471553713859521
GAHPAAIG	8	Unmodified	_GAHPAAIG_					0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3678496583	1	693.36785	692.360573	0.99441	0.0006895	-6.8026	-0.0047167	-5.8082	-0.0040272	693.3630270664128	20.742	0.36136	20.728	20.608	20.969	-0.014088	705	94	1.1990347	0.05601847	1.1975152	244.90787	0	11.442001						426	16	2	NaN	NaN	NaN	0.84651	1	3019	3019		1.6704	0	1	100540	+		7221	8933	4139	4232	5764	5764					0.0020873280317346143
GAHPAAIG	8	Unmodified						0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.36785	692.360573	1.2646	0.00087685	-8.1747	-0.005668	-6.91	-0.0047912	693.3619393865158	20.79	0.072243	20.79	20.766	20.838	0	705	70	1.1990347	0.04155314	1.1990347	244.90788		8.4874115	0.030989	-0.00074563	0.00075972	NaN	1.6704	102	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10218	+		7222	8933	4139	4232							0.0020873280317346143
GAHPAAIG	8	Unmodified						0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	693.36785	692.360573	0.99441	0.0006895	-6.8026	-0.0047167	-5.8082	-0.0040272	693.3630270664128	20.742	0.36136	20.728	20.608	20.969	-0.014088	705	94	1.1990347	0.05601847	1.1975152	244.90787		11.442001	-0.030989	0.00020572	-0.00075972	NaN	1.6704	426	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100540	+		7223	8933	4139	4232							0.0020873280317346143
GAIGSLASLEP	11	Unmodified	_GAIGSLASLEP_					0	0	0			REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5466018848999	1	1014.5466	1013.53933	2.428	0.0024633	-11.43	-0.011596	-9.0019	-0.0091328	1014.5350014364797	25.37	0.048248	25.358	25.334	25.382	-0.012011	225	49	1.4855686	0.028407097	1.4840492	301.56274	0	5.76651						66	3	2	NaN	NaN	NaN	0.76304	1	8951	8951		3.2116	0.42642	1	6051.3	+		7224	12866	4140	4233	5765	5765					0.03309732860748227
GAIGSLASLEP	11	Unmodified						0	0	0			REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1014.5466	1013.53933	2.3165	0.0023502	-12.45	-0.012631	-10.133	-0.010281	1014.5339093378714	25.371	0.096533	25.371	25.346	25.443	0	225	40	1.4855686	0.023081899	1.4855686	301.56274		4.685547	0.0061304	-0.00036417	0.00075972	NaN	3.2116	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5186.1	+		7225	12866	4140	4233							0.03309732860748227
GAIGSLASLEP	11	Unmodified						0	0	0			REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	REV__ENST00000580315.1_1_17:71307168-71307486:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.5466	1013.53933	2.428	0.0024633	-11.43	-0.011596	-9.0019	-0.0091328	1014.5350014364797	25.37	0.048248	25.358	25.334	25.382	-0.012011	225	49	1.4855686	0.028407097	1.4840492	301.56274		5.76651	-0.0061304	0.00067053	-0.00075972	NaN	3.2116	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6051.3	+		7226	12866	4140	4233							0.03309732860748227
GAILGGLI	8	Unmodified	_GAILGGLI_					0	0	0		tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.4556020331	1	713.455602	712.448326	0.93216	0.00066505	-1.4459	-0.0010316	-0.51376	-0.00036655	713.4554678304854	30.631	0.072412	30.625	30.601	30.673	-0.0057545	543	55	1.296287	0.03233087	1.2947675	264.62726	0	6.6000977						108	4	3	NaN	NaN	NaN	0.71635	1	3410	3410		18.034	0	1	10810			7227	13870	4141	4234	5766	5766					0.08059933673939668
GAILGGLI	8	Unmodified						0	0	0		tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	tr|U7STY3|U7STY3_FUSNUDUF445domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01245PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	713.455602	712.448326	0.82324	0.00058734	1.1791	0.00084123	2.0023	0.0014286	713.4562930825958	30.656	0.096548	30.656	30.608	30.704	0	543	49	1.296287	0.028732419	1.296287	264.62723		5.865509	0.015469	0.0010714	0.00075972	NaN	18.034	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10111			7228	13870	4141	4234							0.08059933673939668
GAINRPCTQW	10	Unmodified	_GAINRPCTQW_					0	0	0			REV__ENST00000429728.1_1_2:70515278-70520781:-|nuORF	REV__ENST00000429728.1_1_2:70515278-70520781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2796574277	2	573.279657	1144.54476	1.3598	0.00077956	-7.1395	-0.0040929	-5.7797	-0.0033134	573.2746290385946	20.02	0.31294	20.006	19.934	20.246	-0.014141	1227	103	0.88180584	0.062543035	0.8802864	357.4498	0	25.352478						423	14	3	NaN	NaN	NaN	0.14619	1	14126	14126		40.154	12.365	1	89468	+		7229	12146	4142	4235	5767	5767					-0.02172866828414044
GAIVGMIF	8	Unmodified	_GAIVGMIF_					0	0	0			REV__nc|ENSG00000166265|Q96J86-3|CYYR1	REV__nc|ENSG00000166265|Q96J86-3|CYYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4433227873001	1	807.443323	806.436046	2.0688	0.0016704	-1.1585	-0.0009354	0.9103	0.00073502	807.4430774883185	36.229	0.28932	36.229	36.157	36.446	0	432	133	1.3625998	0.07878721	1.3625998	277.5522	0	16.0484						722	13	4	NaN	NaN	NaN	0.71635	1	4845	4845		18.034	0	1	222430	+		7230	10423	4143	4236	5768	5768					0.025085739392579853
GAIVGMIF	8	Unmodified						0	0	0			REV__nc|ENSG00000166265|Q96J86-3|CYYR1	REV__nc|ENSG00000166265|Q96J86-3|CYYR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.443323	806.436046	2.0688	0.0016704	-1.1585	-0.0009354	0.9103	0.00073502	807.4430774883185	36.229	0.28932	36.229	36.157	36.446	0	432	133	1.3625998	0.07878721	1.3625998	277.5522		16.0484	0.00029732	-4.3376E-05	-0.00013459	NaN	18.034	722	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222430	+		7231	10423	4143	4236							0.025085739392579853
GAIVGMIF	8	Unmodified						0	0	0			REV__nc|ENSG00000166265|Q96J86-3|CYYR1	REV__nc|ENSG00000166265|Q96J86-3|CYYR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.443323	806.436046	2.0526	0.0016573	-1.0572	-0.00085363	0.99538	0.00080372	807.44279700243	36.228	0.38549	36.229	36.157	36.542	0.0011024	429	133	1.3643885	0.07878721	1.362869	277.91653		16.0484	-0.00029732	3.8396E-05	0.00013459	NaN	18.034	734	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213800	+		7232	10423	4143	4236							0.025085739392579853
GAKAAGYA	8	Unmodified	_GAKAAGYA_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073	1	708.367515	707.360239	0.47456	0.00033616	5.8632	0.0041533	6.3378	0.0044895	708.3711101416644	33.721	0.21718	33.721	33.673	33.89	0	720	112	1.1900014	0.06683922	1.1900014	242.96277	0	13.646576						308	10	2	NaN	NaN	NaN	0.84876	1	3360	3360		0.39566	0	1	33626	+		7233	13106	4144	4237	5769	5769					-0.0051468691667651
GAKAAGYA	8	Unmodified						0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.367515	707.360239	0.47456	0.00033616	5.8632	0.0041533	6.3378	0.0044895	708.3711101416644	33.721	0.21718	33.721	33.673	33.89	0	720	112	1.1900014	0.06683922	1.1900014	242.96277		13.646576	0.086008	-0.0014783	0.0088958	NaN	0.39566	308	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33626	+		7234	13106	4144	4237							-0.0051468691667651
GAKGAGYA	8	Unmodified	_GAKGAGYA_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3518652431001	1	694.351865	693.344589	1.2505	0.00086831	5.9658	0.0041423	7.2163	0.0050106	694.3560189290569	26.795	0.096968	26.795	26.77	26.867	0	585	79	1.2711272	0.046785116	1.2711272	259.6259	0	9.555786						127	5	3	NaN	NaN	NaN	0.84876	1	3113	3113		0.39566	0	1	13455	+		7235	8805	4145	4238	5770	5770					-0.01434973433720188
GAKGQALY	8	Unmodified	_GAKGQALY_					0	0	0			REV__nc|ENSG00000173349|Q587I9|SFT2D3	REV__nc|ENSG00000173349|Q587I9|SFT2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4359292234999	1	807.435929	806.428653	2.3733	0.0019163	-11.09	-0.0089544	-8.7167	-0.0070382	807.4309196437202	53.779	0.27413	53.779	53.626	53.9	0	411	214	1.3751161	0.12724936	1.3751161	280.10178	0	25.9198						773	11	6	NaN	NaN	NaN	0.84692	1	4843	4843		1.4396	0	1	197110	+		7236	13172	4146	4239	5771	5771					0.017695576631695076
GAKGTCLV	8	Unmodified	_GAKGTCLV_					0	0	0			REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.70473136035	2	374.704731	747.39491	1.4601	0.00054709	4.7503	0.00178	6.2104	0.0023271	374.706342795331	29.184	0.096537	29.184	29.112	29.208	0	1446	28	0.7469324	0.016691387	0.7469324	304.68475	0	6.808655						65	5	3	NaN	NaN	NaN	0.83582	1	4003	4003		4.4131	0	1	3826.5	+		7237	10953	4147	4240	5772	5772					0.01110812899787561
GAKGTCLV	8	Unmodified						0	0	0			REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	374.704731	747.39491	1.4601	0.00054709	4.7503	0.00178	6.2104	0.0023271	374.706342795331	29.184	0.096537	29.184	29.112	29.208	0	1446	28	0.7469324	0.016691387	0.7469324	304.68475		6.808655	-0.14086	-0.00040318	0.00075972	NaN	4.4131	65	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3826.5	+		7238	10953	4147	4240							0.01110812899787561
GAKGTCLV	8	Unmodified						0	0	0			REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	374.704731	747.39491	1.9917	0.00074631	6.4037	0.0023995	8.3954	0.0031458	374.70649347993754	29.473	0.072397	29.466	29.417	29.49	-0.0070667	1446	31	0.7469324	0.018546999	0.74541295	304.68472		7.5655518	0.14086	0.00083587	-0.00075972	NaN	4.4131	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3191.3	+		7239	10953	4147	4240							0.01110812899787561
GAKGVGGC	8	Unmodified	_GAKGVGGC_					0	0	0			REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3133712468	1	648.313371	647.306095	1.0945	0.00070955	-7.5954	-0.0049242	-6.5009	-0.0042147	648.3083556397265	33.962	0.096512	33.962	33.962	34.059	0	1005	31	1.0174452	0.018256664	1.0174452	208.0977	0	3.734024						59	5	2	NaN	NaN	NaN	0.84876	1	1992	1992		0.39566	0.39566	1	4256	+		7240	12224	4148	4241	5773	5773					-0.031666023398884136
GALDTAVC	8	Unmodified	_GALDTAVC_					0	0	0		nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3498163326001	1	749.349816	748.34254	1.6738	0.0012543	-5.2631	-0.0039439	-3.5892	-0.0026896	749.3458742408114	21.464	0.14466	21.45	21.426	21.571	-0.014006	615	79	1.2531329	0.046790123	1.2516136	255.58612	0	9.543198						157	7	2	NaN	NaN	NaN	0.54545	1	3940	3940		28.667	4.8161	1	16497			7241	2984	4149	4242	5774	5774					-0.04169770233829695
GALDTAVC	8	Unmodified						0	0	0		nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.349816	748.34254	1.495	0.0011203	-6.0802	-0.0045562	-4.5852	-0.0034359	749.3450504782537	21.464	0.12059	21.464	21.44	21.561	0	615	88	1.2531329	0.052191734	1.2531329	255.58614		10.644897	0.0069912	-0.00035328	0.00075972	NaN	28.667	230	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19563			7242	2984	4149	4242							-0.04169770233829695
GALGGFAI	8	Unmodified	_GALGGFAI_					0	0	0			REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3930017762999	1	705.393002	704.385725	0.99421	0.00070131	-10.648	-0.0075112	-9.6541	-0.0068099	705.3846121516984	24.695	0.072319	24.682	24.634	24.707	-0.012392	624	46	1.247731	0.027015924	1.2462115	254.76994	0	5.516281						83	4	2	NaN	NaN	NaN	0.83849	1	3235	3235		4.0537	0	1	10153	+		7243	9764	4150	4243	5775	5775					0.021707876057462272
GALLKMEVIG	10	Unmodified	_GALLKMEVIG_					0	0	0			REV__nc|ENSG00000005471|P21439-3|ABCB4	REV__nc|ENSG00000005471|P21439-3|ABCB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.8019027160001	2	515.801903	1029.58925	-0.5458	-0.00028153	-2.8498	-0.0014699	-3.3956	-0.0017514	515.800364137844	55.194	0.096272	55.193	55.169	55.266	-0.0006218	1269	49	0.8560222	0.029489279	0.85450274	347.4589	0	11.969696						136	5	3	NaN	NaN	NaN	0.72631	1	9574	9574		6.2502	1.8371	1	16768	+		7244	8360	4151	4244	5776	5776					0.07564144265074901
GALLKMEVIG	10	Unmodified						0	0	0			REV__nc|ENSG00000005471|P21439-3|ABCB4	REV__nc|ENSG00000005471|P21439-3|ABCB4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.801903	1029.58925	-0.5458	-0.00028153	-2.8498	-0.0014699	-3.3956	-0.0017514	515.800364137844	55.194	0.096272	55.193	55.169	55.266	-0.0006218	1269	49	0.8560222	0.029489279	0.85450274	347.4589		11.969696	-0.0013796	0.001104	-0.00075972	NaN	6.2502	136	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16768	+		7245	8360	4151	4244							0.07564144265074901
GALRSNYVLK	10	Unmodified	_GALRSNYVLK_					0	0	0		ENSG00000008438|ENST00000008938|PGLYRP1	ENSG00000008438|ENST00000008938|PGLYRP1	ENSG00000008438|ENST00000008938|PGLYRP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.82729772455	2	560.827298	1119.64004	2.0998	0.0011776	-1.9595	-0.001099	0.1403	7.8685E-05	560.8264516302904	17.909	0.095945	17.909	17.885	17.981	0	1374	58	0.791392	0.03516102	0.791392	320.8845	0	14.256653						75	5	2	NaN	NaN	NaN	0.77594	1	13673	13673		1.5054	0.065836	1	5432.1			7246	376	4152	4245	5777	5777					0.08500809634256257
GALTPMPAV	9	Unmodified	_GALTPMPAV_					0	0	0		nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4597011330001	1	856.459701	855.452425	2.0902	0.0017901	-0.10262	-8.7888E-05	1.9875	0.0017023	856.4600006437017	30.149	0.048267	30.149	30.125	30.173	0	393	43	1.3858368	0.025004506	1.3858368	282.01443	0	5.0883484						59	3	2	NaN	NaN	NaN	0.11467	1	5473	5473		33.698	2.9072	1	5263.7			7247	443	4153	4246	5778	5778					0.018916551053507646
GAMYGDPTL	9	Unmodified	_GAMYGDPTL_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1;ENST00000587500.5_1_19:10823370-10823943:+|nuORF	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4131448709	1	924.413145	923.405868	1.8881	0.0017453	0.71955	0.00066516	2.6076	0.0024105	924.4136296121949	22.453	0.19272	22.453	22.405	22.597	0	339	64	1.4179583	0.037449002	1.4179583	288.21497	0	7.611908						207	9	3	NaN	NaN	NaN	0.0047854	1	6465	6465		103.03	70.573	1	24227			7248	5954	4154	4247	5779	5779					-0.05889829516593181
GAMYGDPTL	9	Unmodified	_GAMYGDPTL_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1;ENST00000587500.5_1_19:10823370-10823943:+|nuORF	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4131448709	1	924.413145	923.405868	0.92555	0.00085559	-0.32871	-0.00030387	0.59684	0.00055173	924.4131247412648	22.452	0.19269	22.438	22.366	22.559	-0.013733	339	55	1.4179583	0.032090664	1.4164388	288.21497	0	6.522766						213	9	3	NaN	NaN	NaN	0.030391	1	6340	6340		58.599	34.749	1	26048			7249	5954	4154	4247	5780	5780					-0.05889829516593181
GAMYGDPTL	9	Oxidation (M)	_GAM(Oxidation (M))YGDPTL_		GAM(1)YGDPTL		GAM(91)YGDPTL	0	0	1		ENSG00000213339|ENST00000250237|QTRT1;ENST00000587500.5_1_19:10823370-10823943:+|nuORF	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4080594930001	1	940.408059	939.400783	1.8567	0.001746	0.11043	0.00010385	1.9671	0.0018499	940.4081172508454	20.02	0.16844	20.006	19.958	20.126	-0.014141	315	55	1.4322147	0.032063365	1.4306953	291.03992	0	6.5155945						177	8	2	NaN	NaN	NaN	0.01047	1	6662	6662		91.429	62.762	1	22970			7250	5954	4154	4248	5781	5781		608			-0.07134133379202012
GANIFGVH	8	Unmodified	_GANIFGVH_					0	0	0		tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.4206135103001	1	814.420614	813.413337	1.838	0.0014969	-0.98999	-0.00080627	0.84802	0.00069064	814.4196628253313	14.981	0.12014	14.981	14.933	15.053	0	1575	46	0.6669854	0.027955234	0.6669854	135.8408	0	5.6934814						134	6	3	NaN	NaN	NaN	0.84727	1	4933	4933		1.2418	0	1	14522			7251	13757	4155	4249	5782	5782					-0.000833091340041392
GANIFGVH	8	Unmodified						0	0	0		tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	tr|U7SKP0|U7SKP0_FUSNUN-acetylglucosamine-6-phosphatedeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02094PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	814.420614	813.413337	1.6818	0.0013697	-1.7057	-0.0013892	-0.023931	-1.949E-05	814.4192540616918	15.244	0.16797	15.232	15.184	15.352	-0.012201	1575	40	0.6669854	0.024225235	0.66546595	135.8408		4.9338074	0.1253	-0.00025328	-0.00075972	NaN	1.2418	136	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12485			7252	13757	4155	4249							-0.000833091340041392
GANPHESS	8	Unmodified	_GANPHESS_					0	0	0		ENSG00000117010|ENST00000372699|ZNF684	ENSG00000117010|ENST00000372699|ZNF684	ENSG00000117010|ENST00000372699|ZNF684	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.3376717419001	1	798.337672	797.330395	1.7019	0.0013587	-4.284	-0.00342	-2.5821	-0.0020614	798.3343165215766	26.529	0.072378	26.518	26.47	26.542	-0.010645	540	70	1.2980826	0.041291952	1.2965631	264.46106	0	8.412476						90	4	2	NaN	NaN	NaN	0.84512	1	4627	4627		2.4615	0	1	7867.4			7253	2124	4156	4250	5783	5783					-0.07637670652661654
GANPHESS	8	Unmodified						0	0	0		ENSG00000117010|ENST00000372699|ZNF684	ENSG00000117010|ENST00000372699|ZNF684	ENSG00000117010|ENST00000372699|ZNF684	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.337672	797.330395	2.0082	0.0016032	-6.41	-0.0051174	-4.4019	-0.0035142	798.3323697987967	26.529	0.072388	26.529	26.481	26.553	0	537	79	1.2998781	0.04668033	1.2998781	264.82687		9.510284	0.0054698	-0.0007151	0.0016575	NaN	2.4615	112	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9387.1			7254	2124	4156	4250							-0.07637670652661654
GAPAPEEF	8	Unmodified	_GAPAPEEF_					0	0	0		ENST00000533244.5_1_11:66360673-66360718:+|nuORF	ENST00000533244.5_1_11:66360673-66360718:+|nuORF	ENST00000533244.5_1_11:66360673-66360718:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.3726602647	1	817.37266	816.365384	1.2205	0.0009976	5.3408	0.0043654	6.5613	0.005363	817.3761966923489	32.513	0.09655	32.51	32.486	32.583	-0.0031052	474	49	1.3375392	0.028661966	1.3360198	272.392	0	5.8370667						115	5	3	NaN	NaN	NaN	0.77489	1	4862	4862		12.588	2.5363	1	9449.8			7255	7459	4157	4251	5784	5784					-0.05014427844707825
GAPDEVYVL	9	Unmodified	_GAPDEVYVL_					0	0	0			REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4829389956	1	962.482939	961.475663	1.4295	0.0013759	-2.1058	-0.0020268	-0.67633	-0.00065095	962.481536813965	34.421	0.12064	34.421	34.396	34.517	0	327	61	1.425088	0.03564489	1.425088	289.49564	0	7.2409973						141	6	2	NaN	NaN	NaN	0.11467	1	7364	7364		33.698	7.9465	1	13395	+		7256	11125	4158	4252	5785	5785					-0.006616275763349222
GAPDEVYVL	9	Unmodified	_GAPDEVYVL_					0	0	0			REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4829389956	1	962.482939	961.475663	1.2771	0.0012292	-1.3578	-0.0013068	-0.080697	-7.767E-05	962.4819877300816	34.443	0.14467	34.443	34.395	34.539	-0.0006485	327	58	1.425088	0.033857226	1.4235686	289.49564	0	6.877838						156	7	3	NaN	NaN	NaN	0.27442	1	7218	7218		20.555	4.1388	1	12252	+		7257	11125	4158	4252	5786	5786					-0.006616275763349222
GAPDEVYVL	9	Unmodified						0	0	0			REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	962.482939	961.475663	1.4295	0.0013759	-2.1058	-0.0020268	-0.67633	-0.00065095	962.481536813965	34.421	0.12064	34.421	34.396	34.517	0	327	61	1.425088	0.03564489	1.425088	289.49564		7.2409973	-0.011121	-0.00048145	0.00075972	NaN	33.698	141	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13395	+		7258	11125	4158	4252							-0.006616275763349222
GAPDEVYVL	9	Unmodified						0	0	0			REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	REV__FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.482939	961.475663	1.2771	0.0012292	-1.3578	-0.0013068	-0.080697	-7.767E-05	962.4819877300816	34.443	0.14467	34.443	34.395	34.539	-0.0006485	327	58	1.425088	0.033857226	1.4235686	289.49564		6.877838	0.011121	0.00023852	-0.00075972	NaN	33.698	156	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12252	+		7259	11125	4158	4252							-0.006616275763349222
GAPDGSFL	8	Unmodified	_GAPDGSFL_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000473632.1_1_20:39793920-39794467:+|nuORF	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3620955784	1	763.362096	762.354819	1.3755	0.00105	5.7248	0.0043701	7.1003	0.0054201	763.3661320152793	27.06	0.14481	27.06	27.012	27.157	0	522	70	1.3088527	0.0412699	1.3088527	266.86224	0	8.41452						188	7	3	NaN	NaN	NaN	0.76633	1	4242	4242		13.737	0	1	21415			7260	2401	4159	4253	5787	5787					-0.035864104991446766
GAPDGSFL	8	Unmodified	_GAPDGSFL_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000473632.1_1_20:39793920-39794467:+|nuORF	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3620955784	1	763.362096	762.354819	1.3032	0.00099478	5.4504	0.0041606	6.7535	0.0051554	763.3652470815871	27.084	0.16893	27.074	27.025	27.194	-0.010124	519	88	1.310647	0.0520581	1.3091276	267.2281	0	10.614166						247	8	3	NaN	NaN	NaN	0.79379	1	4167	4167		10.052	0	1	23770			7261	2401	4159	4253	5788	5788					-0.035864104991446766
GAPEGNEL	8	Unmodified	_GAPEGNEL_					0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.3628238599	1	786.362824	785.355547	2.1836	0.0017171	3.335	0.0026225	5.5186	0.0043396	786.365407237027	22.814	0.24106	22.814	22.766	23.007	0	510	82	1.316029	0.048442006	1.316029	268.18646	0	9.871735						267	11	2	NaN	NaN	NaN	0.6053	1	4568	4568		24.961	0	1	57434	+		7262	8532	4160	4254	5789	5789					-0.04571615850090893
GAPEGNEL	8	Unmodified	_GAPEGNEL_					0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.3628238599	1	786.362824	785.355547	1.6794	0.0013206	4.2275	0.0033244	5.907	0.004645	786.3661693500142	22.814	0.16867	22.8	22.752	22.921	-0.01354	507	73	1.3178225	0.043048143	1.316303	268.55197	0	8.7725525						312	8	3	NaN	NaN	NaN	0.14443	1	4482	4482		55.494	0	1	57521	+		7263	8532	4160	4254	5790	5790					-0.04571615850090893
GAPEGNEL	8	Unmodified						0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	786.362824	785.355547	2.1836	0.0017171	3.335	0.0026225	5.5186	0.0043396	786.365407237027	22.814	0.24106	22.814	22.766	23.007	0	510	82	1.316029	0.048442006	1.316029	268.18646		9.871735	0.0070886	-0.0003848	-0.00013707	NaN	55.494	267	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57434	+		7264	8532	4160	4254							-0.04571615850090893
GAPEGNEL	8	Unmodified						0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	786.362824	785.355547	1.6794	0.0013206	4.2275	0.0033244	5.907	0.004645	786.3661693500142	22.814	0.16867	22.8	22.752	22.921	-0.01354	507	73	1.3178225	0.043048143	1.316303	268.55197		8.7725525	-0.0070886	0.00031704	0.00013707	NaN	55.494	312	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57521	+		7265	8532	4160	4254							-0.04571615850090893
GAPFIMKV	8	Unmodified	_GAPFIMKV_					0	0	0			REV__ENST00000404796.2_1_9:22029533-22032783:+|nuORF	REV__ENST00000404796.2_1_9:22029533-22032783:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	862.4855219530001	1	862.485522	861.478245	1.9341	0.0016681	-9.1578	-0.0078985	-7.2237	-0.0062304	862.4785162343554	56.78	0.096146	56.78	56.756	56.852	0	303	82	1.4393384	0.04808235	1.4393384	292.8695	0	9.783569						192	5	3	NaN	NaN	NaN	0.84651	1	5553	5553		1.6704	0.2308	1	19416	+		7266	12047	4161	4255	5791	5791					0.041965493476368465
GAPGSWWG	8	Unmodified	_GAPGSWWG_					0	0	0		ENST00000573440.1_1_16:680894-681299:+|nuORF	ENST00000573440.1_1_16:680894-681299:+|nuORF	ENST00000573440.1_1_16:680894-681299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.3627642804	1	817.362764	816.355488	1.0835	0.00088564	-10.056	-0.0082196	-8.9727	-0.0073339	817.3540307454588	32.296	0.24134	32.292	32.196	32.437	-0.0037613	510	106	1.316029	0.06281543	1.3145095	268.0115	0	12.79245						443	11	3	NaN	NaN	NaN	0.76633	1	4861	4861		13.737	0.73422	1	60204			7267	7649	4162	4256	5792	5792					-0.060035710594320335
GAPPQSRL	8	Unmodified	_GAPPQSRL_					0	0	0			REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.23250188235005	2	413.232502	824.450451	1.6039	0.00066278	8.3281	0.0034414	9.932	0.0041042	413.2365101291478	26.674	0.048279	26.674	26.625	26.674	0	1407	46	0.77102906	0.027785778	0.77102906	313.98535	0	11.315155						47	3	2	NaN	NaN	NaN	0.84692	1	5087	5087		1.4396	0	1	3121.2	+		7268	12815	4163	4257	5793	5793					0.03120362411766564
GAPSPTLM	8	Unmodified	_GAPSPTLM_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.3862018389002	1	773.386202	772.378925	1.2801	0.00099	4.7071	0.0036404	5.9872	0.0046304	773.3903128918258	29.835	0.19303	29.828	29.779	29.972	-0.0070667	534	82	1.3016734	0.048488617	1.300154	265.33755	0	9.884094						257	9	3	NaN	NaN	NaN	0.79379	1	4313	4313		10.052	3.2576	1	36999			7269	3632	4164	4258	5794	5794					-0.01636893337104084
GAQAEPSH	8	Unmodified	_GAQAEPSH_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000013050	REV__CON__ENSEMBL:ENSBTAP00000013050	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.358407184	1	796.358407	795.351131	2.3692	0.0018867	-4.1693	-0.0033203	-1.8001	-0.0014335	796.3559909620477	26.022	0.21723	26.022	25.95	26.167	0	534	85	1.3016734	0.05025506	1.3016734	265.2038	0	10.238983						283	10	3	NaN	NaN	NaN	0.82797	1	4688	4688		5.4659	0	1	36501	+	+	7270	8254	4165	4259	5795	5795					-0.05473080272997777
GAQIFNWQL	9	Unmodified	_GAQIFNWQL_					0	0	0			REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7798162157001	2	538.779816	1075.54508	1.6324	0.00087951	-2.2318	-0.0012024	-0.59937	-0.00032293	538.7775447448871	17.594	0.09589	17.58	17.556	17.652	-0.013567	1287	76	0.8449601	0.046079576	0.84344065	342.77542	0	18.693085						137	5	3	NaN	NaN	NaN	0.25448	1	11485	11485		21.835	2.7167	1	12443	+		7271	10491	4166	4260	5796	5796					0.010328761630944427
GARGHGGG	8	Unmodified	_GARGHGGG_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	1.7094	0.0011424	4.6936	0.0031369	6.403	0.0042793	668.3238271383675	34.517	0.048267	34.517	34.469	34.517	0	711	49	1.1954219	0.028914213	1.1954219	244.3475	0	5.910141						45	3	2	NaN	NaN	NaN	0.84887	1	2534	2534		0.32989	0	1	3927.3	+		7272	10094	4167	4261	5797	5797					-0.03194492659190473
GARGHGGG	8	Unmodified	_GARGHGGG_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3222964492002	1	668.322296	667.31502	1.382	0.00092362	1.4701	0.00098253	2.8521	0.0019061	668.3232679371241	34.54	0.19289	34.539	34.37	34.563	-0.00064468	711	52	1.1954219	0.030716538	1.1939025	244.34752	0	6.278534						125	9	2	NaN	NaN	NaN	0.84727	1	2425	2425		1.2418	0	1	10268	+		7273	10094	4167	4261	5798	5798					-0.03194492659190473
GARGHGGG	8	Unmodified	_GARGHGGG_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3222964492002	1	668.322296	667.31502	1.3792	0.00092173	2.4432	0.0016328	3.8223	0.0025545	668.3238966005955	34.66	0.096447	34.66	34.612	34.708	-0.00064468	711	55	1.1954219	0.032521605	1.1939025	244.34752	0	6.6474915						116	5	2	NaN	NaN	NaN	0.84887	1	2431	2431		0.32989	0	1	12323	+		7274	10094	4167	4261	5799	5799					-0.03194492659190473
GARGHGGG	8	Unmodified						0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	668.322296	667.31502	1.7094	0.0011424	4.6936	0.0031369	6.403	0.0042793	668.3238271383675	34.517	0.048267	34.517	34.469	34.517	0	711	49	1.1954219	0.028914213	1.1954219	244.3475		5.910141	-0.011095	0.0014986	0.00075972	NaN	1.2418	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3927.3	+		7275	10094	4167	4261							-0.03194492659190473
GARGHGGG	8	Unmodified						0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	668.322296	667.31502	1.382	0.00092362	1.4701	0.00098253	2.8521	0.0019061	668.3232679371241	34.54	0.19289	34.539	34.37	34.563	-0.00064468	711	52	1.1954219	0.030716538	1.1939025	244.34752		6.278534	0.011095	-0.00065576	-0.00075972	NaN	1.2418	125	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10268	+		7276	10094	4167	4261							-0.03194492659190473
GASFCGLI	8	Unmodified	_GASFCGLI_					0	0	0			REV__ENSG00000164136|ENST00000320650|IL15	REV__ENSG00000164136|ENST00000320650|IL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.3756371526	1	767.375637	766.368361	1.6331	0.0012532	-7.133	-0.0054737	-5.4999	-0.0042205	767.3707550934826	28.701	0.096531	28.701	28.701	28.798	0	543	64	1.296287	0.0377295	1.296287	264.2758	0	7.6919556						78	5	2	NaN	NaN	NaN	0.80692	1	4302	4302		8.2903	0	1	5422.2	+		7277	10323	4168	4262	5800	5800					-0.024168759915596638
GASFCGLI	8	Unmodified						0	0	0			REV__ENSG00000164136|ENST00000320650|IL15	REV__ENSG00000164136|ENST00000320650|IL15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.375637	766.368361	1.6331	0.0012532	-7.133	-0.0054737	-5.4999	-0.0042205	767.3707550934826	28.701	0.096531	28.701	28.701	28.798	0	543	64	1.296287	0.0377295	1.296287	264.2758		7.6919556	-0.0075184	-0.0011412	-0.00013812	NaN	8.2903	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5422.2	+		7278	10323	4168	4262							-0.024168759915596638
GASFCGLI	8	Unmodified						0	0	0			REV__ENSG00000164136|ENST00000320650|IL15	REV__ENSG00000164136|ENST00000320650|IL15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.375637	766.368361	1.5389	0.0011809	-4.004	-0.0030726	-2.4651	-0.0018917	767.3728786715557	28.725	0.14479	28.716	28.644	28.789	-0.0083504	540	49	1.2980826	0.028732419	1.2965631	264.64188		5.857727	0.0075184	0.0012599	0.00013812	NaN	8.2903	107	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7314.9	+		7279	10323	4168	4262							-0.024168759915596638
GASGMGGI	8	Unmodified	_GASGMGGI_					0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__H-INV:HIT000292931;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.15233164909995	2	325.152332	648.29011	1.7224	0.00056005	3.6474	0.001186	5.3698	0.001746	325.1541279412884	34.445	0.096516	34.445	34.421	34.517	0	1545	46	0.68561107	0.027924895	0.68561107	280.4377	0	11.42218						76	5	2	NaN	NaN	NaN	0.82332	1	2007	2007		6.0903	2.5171	1	6687		+	7280	194	4169	4263	5801	5801					-0.04810308576793432
GASPKPHGP	9	Unmodified	_GASPKPHGP_					0	0	0			REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.22467685025003	2	424.224677	846.434801	1.9136	0.00081181	2.36	0.0010012	4.2736	0.001813	424.22562697684515	18.338	0.31206	18.324	18.228	18.54	-0.01395	1440	97	0.7506418	0.059292376	0.7491224	305.55322	0	24.135315						535	14	3	NaN	NaN	NaN	0.2961	1	5207	5207		19.164	1.1291	1	111690	+		7281	11550	4170	4264	5802	5802					0.0054407589472020845
GASPKPHGP	9	Unmodified						0	0	0			REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	424.224677	846.434801	2.1865	0.00092757	1.882	0.00079839	4.0685	0.001726	424.2254273763912	18.173	0.33583	18.173	18.125	18.46	0	1443	106	0.7487872	0.064861596	0.7487872	304.7983		26.402313	-0.075512	-0.0001801	-0.00016758	NaN	19.164	474	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105850	+		7282	11550	4170	4264							0.0054407589472020845
GASPKPHGP	9	Unmodified						0	0	0			REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	424.224677	846.434801	1.9136	0.00081181	2.36	0.0010012	4.2736	0.001813	424.22562697684515	18.338	0.31206	18.324	18.228	18.54	-0.01395	1440	97	0.7506418	0.059292376	0.7491224	305.55322		24.135315	0.075512	0.00022543	0.00016758	NaN	19.164	535	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111690	+		7283	11550	4170	4264							0.0054407589472020845
GATQGALF	8	Unmodified	_GATQGALF_					0	0	0			REV__ENST00000464262.6_1_7:36910010-37025590:-|nuORF	REV__ENST00000464262.6_1_7:36910010-37025590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.3937300578	1	764.39373	763.386454	1.3133	0.0010039	4.9377	0.0037743	6.251	0.0047782	764.3975371324068	32.248	0.12069	32.244	32.22	32.341	-0.0037613	558	40	1.2873057	0.023358822	1.2857863	262.46274	0	4.762512						84	6	2	NaN	NaN	NaN	0.78967	1	4187	4187		10.605	0	1	6059.3	+		7284	12284	4171	4265	5803	5803					-0.00470417745202667
GAVSGAGLF	9	Unmodified	_GAVSGAGLF_					0	0	0			REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4093801220001	1	778.40938	777.402104	1.7772	0.0013834	-0.40325	-0.0003139	1.3739	0.0010695	778.4091144923898	22.934	0.26508	22.921	22.848	23.113	-0.01354	543	67	1.296287	0.03950715	1.2947675	264.20978	0	8.052368						351	12	3	NaN	NaN	NaN	0.12945	1	4383	4383		31.561	6.6	1	63949	+		7285	9933	4172	4266	5804	5804					0.004498687718637484
GAVSGAGLF	9	Unmodified						0	0	0			REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	778.40938	777.402104	1.7772	0.0013834	-0.40325	-0.0003139	1.3739	0.0010695	778.4091144923898	22.934	0.26508	22.921	22.848	23.113	-0.01354	543	67	1.296287	0.03950715	1.2947675	264.20978		8.052368	0.0049018	2.2373E-05	-0.00075972	NaN	31.561	351	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63949	+		7286	9933	4172	4266							0.004498687718637484
GAYGAGGV	8	Unmodified	_GAYGAGGV_					0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	326.158471272	2	326.158471	650.30239	1.4559	0.00047486	6.6235	0.0021603	8.0795	0.0026352	326.1608554502186	44.52	0.11988	44.52	44.4	44.52	0	1536	103	0.69119483	0.06324482	0.69119483	282.7036	0	25.867584						149	6	2	NaN	NaN	NaN	0.84876	1	2056	2056		0.39566	0	1	14771			7287	14019	4173	4267	5805	5805					-0.036749488420923626
GAYGAGGV	8	Unmodified	_GAYGAGGV_					0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.158471272	2	326.158471	650.30239	1.3797	0.00045	3.6565	0.0011926	5.0362	0.0016426	326.1600728777574	40.967	0.16819	40.974	40.878	41.046	0.0074959	1533	67	0.6930556	0.04093647	0.6915362	283.46475	0	16.743317						307	8	3	NaN	NaN	NaN	0.84651	1	1965	1965		1.6704	0	1	90657			7288	14019	4173	4267	5806	5806					-0.036749488420923626
GAYGAGGV	8	Unmodified						0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	326.158471	650.30239	1.0775	0.00035142	5.8385	0.0019043	6.916	0.0022557	326.1605059591977	40.777	0.071968	40.777	40.777	40.849	0	1536	58	0.69119483	0.035356104	0.69119483	282.7036		14.460907	-0.098852	0.00062385	-0.0001707	NaN	1.6704	118	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32409			7289	14019	4173	4267							-0.036749488420923626
GCAKAIGA	8	Unmodified	_GCAKAIGA_					0	0	0			REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.1184	0.00077209	4.0301	0.0027822	5.1485	0.0035543	690.3634082053834	34.419	0.12051	34.419	34.37	34.491	-0.00064468	759	79	1.1664921	0.04705119	1.1649727	238.28104	0	9.611206						175	6	2	NaN	NaN	NaN	0.84727	1	2938	2938		1.2418	0	1	14829	+		7290	10179	4174	4268	5807	5807					-0.004057427887460108
GCARGPGP	8	Unmodified	_GCARGPGP_					0	0	0		ENSG00000116771|ENST00000375826|AGMAT	ENSG00000116771|ENST00000375826|AGMAT	ENSG00000116771|ENST00000375826|AGMAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.67122289400004	2	357.671223	713.327893	1.0744	0.00038427	-8.8656	-0.003171	-7.7912	-0.0027867	357.6680678064724	41.907	0.072121	41.907	41.859	41.931	0	1485	37	0.72280174	0.02229023	0.72280174	295.09442	0	9.100281						60	4	2	NaN	NaN	NaN	0.84651	1	3477	3477		1.6704	0	1	7199.3			7291	2109	4175	4269	5808	5808					-0.040237975913100854
GCASKAIG	8	Unmodified	_GCASKAIG_					0	0	0		ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615001	1	706.355236	705.34796	0.45432	0.00032091	4.0325	0.0028484	4.4868	0.0031693	706.3581057695101	37.699	0.096317	37.699	37.65	37.747	0	741	61	1.1773466	0.036162257	1.1773466	240.39209	0	7.3836517						84	5	2	NaN	NaN	NaN	0.84727	1	3314	3314		1.2418	0	1	6670.8			7292	4289	4176	4270	5809	5809					-0.016500466513548417
GCATKGVS	8	Unmodified	_GCATKGVS_					0	0	0			REV__nc|ENSG00000182158|Q70SY1-2|CREB3L2	REV__nc|ENSG00000182158|Q70SY1-2|CREB3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3501506836002	1	722.350151	721.342874	1.1235	0.00081158	3.8372	0.0027718	4.9607	0.0035834	722.3521108549755	26.722	0.072378	26.711	26.663	26.735	-0.010645	720	49	1.1900014	0.028911233	1.1884819	242.8733	0	5.9006195						87	4	2	NaN	NaN	NaN	0.84512	1	3533	3533		2.4615	0	1	11038	+		7293	13185	4177	4271	5810	5810					-0.028943505139636727
GCAVCGCC	8	Unmodified	_GCAVCGCC_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.10515534095	2	358.105155	714.195758	1.9016	0.00068097	3.0961	0.0011087	4.9976	0.0017897	358.10653143304523	26.408	0.19304	26.408	26.36	26.553	0	1458	52	0.7395112	0.03154862	0.7395112	301.90936	0	12.879913						226	9	3	NaN	NaN	NaN	0.84945	1	3495	3495		0	0	1	33884			7294	331	4178	4272	5811	5811					-0.17277229986439124
GCDGDGGM	8	Unmodified	_GCDGDGGM_					0	0	0		ENST00000274140.9_1_5:10415684-10415765:+|nuORF	ENST00000274140.9_1_5:10415684-10415765:+|nuORF	ENST00000274140.9_1_5:10415684-10415765:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.2072511953002	1	711.207251	710.199975	1.4377	0.0010225	3.0018	0.0021349	4.4396	0.0031575	711.2096928763136	56.061	0.048046	56.061	56.061	56.109	0	564	43	1.2837118	0.025159717	1.2837118	262.07574	0	5.1364746						49	3	2	NaN	NaN	NaN	0.84945	1	3424	3424		0	0	1	3678.8			7295	6345	4179	4273	5812	5812					-0.1667172596750106
GCDGDGGM	8	Unmodified	_GCDGDGGM_					0	0	0		ENST00000274140.9_1_5:10415684-10415765:+|nuORF	ENST00000274140.9_1_5:10415684-10415765:+|nuORF	ENST00000274140.9_1_5:10415684-10415765:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	356.10726383095005	2	356.107264	710.199975	2.2359	0.00079623	0.13245	4.7166E-05	2.3684	0.0008434	356.1081824901969	26.48	0.096512	26.47	26.421	26.518	-0.010645	1530	28	0.6949163	0.016745806	0.69339687	283.73322	0	6.8372803						56	5	2	NaN	NaN	NaN	0.84692	1	3364	3364		1.4396	1.1097	1	4000.9			7296	6345	4179	4273	5813	5813					-0.1667172596750106
GCDSSCGS	8	Unmodified	_GCDSSCGS_					0	0	0		ENSG00000254997|ENST00000528743|KRTAP5-9	ENSG00000254997|ENST00000528743|KRTAP5-9	ENSG00000254997|ENST00000528743|KRTAP5-9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.104721142	2	358.104721	714.194889	2.08	0.00074485	3.3604	0.0012034	5.4403	0.0019482	358.1058235657926	26.239	0.12067	26.239	26.191	26.312	0	1467	37	0.7339432	0.022275686	0.7339432	299.6362	0	9.094147						86	6	2	NaN	NaN	NaN	0.84727	1	3494	3494		1.2418	0.84618	1	7062.6			7297	6121	4180	4274	5814	5814					-0.17364029830127947
GCEDGHSC	8	Unmodified	_GCEDGHSC_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2396139562	1	807.239614	806.232337	1.978	0.0015967	-7.1563	-0.0057768	-5.1782	-0.0041801	807.2348609941612	32.394	0.28955	32.394	32.345	32.635	0	579	115	1.2747238	0.06834173	1.2747238	259.6536	0	13.920807						901	13	4	NaN	NaN	NaN	0.84727	1	4820	4820		1.2418	0	1	209660	+		7298	12504	4181	4275	5815	5815					-0.1785293856453336
GCEDGHSC	8	Unmodified	_GCEDGHSC_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.2396139562	1	807.239614	806.232337	1.7816	0.0014382	-5.9466	-0.0048003	-4.165	-0.0033621	807.2347214431115	34.324	0.09639	34.324	34.3	34.396	0	579	115	1.2747238	0.06833446	1.2747238	259.65356	0	13.919312						242	5	2	NaN	NaN	NaN	0.84727	1	4826	4826		1.2418	0	1	28757	+		7299	12504	4181	4275	5816	5816					-0.1785293856453336
GCEDGHSC	8	Unmodified	_GCEDGHSC_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2396139562	1	807.239614	806.232337	1.2004	0.00096904	-6.4468	-0.0052041	-5.2464	-0.0042351	807.2347960148369	32.682	0.2172	32.679	32.631	32.848	-0.0031052	579	70	1.2747238	0.04134035	1.2732043	259.65356	0	8.420807						262	10	3	NaN	NaN	NaN	0.84727	1	4725	4725		1.2418	0	1	25811	+		7300	12504	4181	4275	5817	5817					-0.1785293856453336
GCEDGHSC	8	Unmodified	_GCEDGHSC_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2396139562	1	807.239614	806.232337	1.2459	0.0010057	-5.5272	-0.0044618	-4.2814	-0.0034561	807.23528525699	35.07	0.14481	35.07	35.046	35.191	-4.5776E-05	585	88	1.2711272	0.052152634	1.2696078	258.921	0	10.623184						259	7	2	NaN	NaN	NaN	0.84727	1	4733	4733		1.2418	0	1	29072	+		7301	12504	4181	4275	5818	5818					-0.1785293856453336
GCEDGHSC	8	Unmodified	_GCEDGHSC_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2396139562	1	807.239614	806.232337	1.3478	0.001088	-5.1086	-0.0041239	-3.7608	-0.0030359	807.2351298524629	33.044	0.04818	33.042	32.993	33.042	-0.0024757	573	58	1.2783196	0.034154415	1.2768002	260.38602	0	6.957062						71	3	2	NaN	NaN	NaN	0.84727	1	4735	4735		1.2418	0	1	8957.2	+		7302	12504	4181	4275	5819	5819					-0.1785293856453336
GCESVPSP	8	Unmodified	_GCESVPSP_					0	0	0			REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.3290808905001	1	775.329081	774.321804	1.9074	0.0014789	1.3092	0.0010151	3.2167	0.002494	775.3306194671703	24.791	0.072397	24.791	24.743	24.816	0	492	37	1.3267875	0.021508098	1.3267875	270.44507	0	4.3840637						47	4	2	NaN	NaN	NaN	0.82332	1	4417	4417		6.0903	0	1	2201.8	+		7303	10933	4182	4276	5820	5820					-0.07438360613491568
GCGFAAVL	8	Unmodified	_GCGFAAVL_					0	0	0		ENST00000263776.8_1_11:44087965-44089254:+|nuORF	ENST00000263776.8_1_11:44087965-44089254:+|nuORF	ENST00000263776.8_1_11:44087965-44089254:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3650724662999	1	737.365072	736.357796	1.2918	0.00095253	-4.6257	-0.0034108	-3.3339	-0.0024583	737.3613930547248	40.655	0.12006	40.661	40.565	40.685	0.0067558	705	49	1.1990347	0.028895617	1.1975152	244.62396	0	5.895233						118	6	2	NaN	NaN	NaN	0.84876	1	3772	3772		0.39566	0	1	8222			7304	6321	4183	4277	5821	5821					-0.02092858645994511
GCGGADDD	8	Unmodified	_GCGGADDD_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.2093596852999	1	709.20936	708.202083	0.81492	0.00057795	-2.286	-0.0016213	-1.4711	-0.0010433	709.2079064967774	41.039	0.21664	41.046	41.022	41.239	0.0074959	681	40	1.2134778	0.023461461	1.2119584	247.75041	0	4.7900085						105	10	2	NaN	NaN	NaN	0.84945	1	3318	3318		0	0	1	7742.1	+		7305	9433	4184	4278	5822	5822					-0.1636897395807182
GCGKAGGG	8	Unmodified	_GCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.2664210542	1	606.266421	605.259145	1.6115	0.00097702	-5.5484	-0.0033638	-3.9369	-0.0023868	606.2640729452141	53.948	0.024151	53.948	53.924	53.948	0	822	40	1.1284465	0.023577332	1.1284465	231.132	0	4.829193						41	2	2	NaN	NaN	NaN	0.84887	1	712	712		0.32989	0.32989	1	2564.1	+		7306	11563	4185	4279	5823	5823					-0.05927461891030816
GCGVSPGK	8	Unmodified	_GCGVSPGK_					0	0	0		ENST00000320033.4_1_17:41476386-41477082:+|nuORF	ENST00000320033.4_1_17:41476386-41477082:+|nuORF	ENST00000320033.4_1_17:41476386-41477082:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3395859973001	1	704.339586	703.33231	0.99987	0.00070425	4.4485	0.0031333	5.4484	0.0038375	704.3429322412301	24.671	0.096512	24.671	24.671	24.767	0	693	64	1.2062578	0.03793168	1.2062578	246.30864	0	7.7453613						105	5	2	NaN	NaN	NaN	0.82332	1	3267	3267		6.0903	0	1	6268			7307	6479	4186	4280	5824	5824					-0.03122333168403202
GCGYSGGG	8	Unmodified	_GCGYSGGG_					0	0	0		ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.2297011969002	1	657.229701	656.222425	1.7654	0.0011603	0.41453	0.00027244	2.1799	0.0014327	657.2299628981307	25.974	0.072395	25.974	25.95	26.022	0	801	106	1.1411378	0.06341624	1.1411378	233.3309	0	12.966858						152	4	2	NaN	NaN	NaN	0.84945	1	2191	2191		0	0	1	20355			7308	5853	4187	4281	5825	5825					-0.11943758507572966
GCGYSGGG	8	Unmodified	_GCGYSGGG_					0	0	0		ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.2297011969002	1	657.229701	656.222425	1.7531	0.0011522	1.7913	0.0011773	3.5444	0.0023295	657.2304626447561	25.901	0.072371	25.901	25.829	25.901	0	798	97	1.1429502	0.057977557	1.1429502	233.70145	0	11.854782						165	4	2	NaN	NaN	NaN	0.84945	1	2192	2192		0	0	1	16169			7309	5853	4187	4281	5826	5826					-0.11943758507572966
GCGYSGGG	8	Unmodified						0	0	0		ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	657.229701	656.222425	1.3419	0.00088191	-2.8934	-0.0019016	-1.5515	-0.0010197	657.2269921385019	26.311	0.24128	26.3	26.276	26.517	-0.011135	795	70	1.1447623	0.0416646	1.1432428	234.07199		8.519257	0.19945	-0.0019244	0.00014632	NaN	0	243	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18331			7310	5853	4187	4281							-0.11943758507572966
GCGYSGGG	8	Unmodified						0	0	0		ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	ENSG00000203782|ENST00000368742|LORICRIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	657.229701	656.222425	1.8841	0.0012383	-0.34097	-0.00022409	1.5431	0.0010142	657.2294653724458	26.022	0.21724	26.011	25.938	26.156	-0.011135	792	94	1.1465741	0.056162715	1.1450547	234.44246		11.483688	0.018461	-0.00030429	0.0019584	NaN	0	337	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40856			7311	5853	4187	4281							-0.11943758507572966
GCQGGLLG	8	Unmodified	_GCQGGLLG_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3395859973002	1	704.339586	703.33231	1.057	0.00074451	5.527	0.0038929	6.584	0.0046374	704.343768228373	24.623	0.072407	24.61	24.538	24.61	-0.012394	693	55	1.2062578	0.03249383	1.2047384	246.30864	0	6.6349792						99	4	2	NaN	NaN	NaN	0.84876	1	3216	3216		0.39566	0	1	8700.2			7312	5571	4188	4282	5827	5827					-0.03122333168391833
GCRCVGPL	8	Unmodified	_GCRCVGPL_					0	0	0			REV__ENSG00000163145|ENST00000444304|C1QTNF7	REV__ENSG00000163145|ENST00000444304|C1QTNF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.3854903324001	1	804.38549	803.378214	-0.17681	-0.00014222	-0.3087	-0.00024831	-0.48551	-0.00039053	804.3865177538493	55.218	0.072227	55.217	55.193	55.266	-0.00061798	489	61	1.3285799	0.035858154	1.3270605	270.63983	0	7.304535						138	4	3	NaN	NaN	NaN	0.84692	1	4692	4692		1.4396	0	1	14943	+		7313	10271	4189	4283	5828	5828					-0.031340112578163826
GCRGSSAK	8	Unmodified	_GCRGSSAK_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.3671977313	1	765.367198	764.359921	1.28	0.00097964	7.3689	0.0056399	8.6489	0.0066195	765.374033327866	43.561	0.19207	43.561	43.465	43.657	0	504	58	1.3196158	0.03407061	1.3196158	269.04425	0	6.9463806						167	9	3	NaN	NaN	NaN	0.83913	1	4273	4273		3.9685	1.1833	1	10366	+		7314	11372	4190	4284	5829	5829					-0.03168429908168946
GCRRQSWLR	9	Unmodified	_GCRRQSWLR_					0	0	0			REV__ENST00000254351.8_1_2:20400819-20401029:-|nuORF	REV__ENST00000254351.8_1_2:20400819-20401029:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.8734527423333	3	387.873453	1160.59853	1.9801	0.00076802	7.7205	0.0029946	9.7006	0.0037626	387.87655643375683	18.077	0.095963	18.077	18.029	18.125	0	1401	43	0.77473325	0.025934815	0.77473325	470.98767	0	15.766693						55	5	2	NaN	NaN	NaN	0.68136	1	15179	15179		0.33255	0.11881	1	4303.5	+		7315	11511	4191	4285	5830	5830					0.024653503939589427
GCSCCCFP	8	Unmodified	_GCSCCCFP_					0	0	0			REV__ENSG00000176723|ENST00000315678|ZNF843	REV__ENSG00000176723|ENST00000315678|ZNF843	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.2292489658	1	819.229249	818.221972	1.0838	0.00088791	6.879	0.0056355	7.9628	0.0065234	819.2348661993622	33.985	0.2414	33.984	33.936	34.177	-0.0012474	576	70	1.2765218	0.041362524	1.2750024	259.95593	0	8.423218						288	11	3	NaN	NaN	NaN	0.84692	1	4883	4883		1.4396	1.0439	1	19153	+		7316	10754	4192	4286	5831	5831					-0.19440960814961272
GCSCCCFP	8	Unmodified						0	0	0			REV__ENSG00000176723|ENST00000315678|ZNF843	REV__ENSG00000176723|ENST00000315678|ZNF843	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	819.229249	818.221972	1.3117	0.0010746	6.5184	0.0053401	7.8301	0.0064147	819.2344240809236	33.986	0.1448	33.986	33.938	34.083	0	579	82	1.2747238	0.048550725	1.2747238	259.58978		9.887085	0.001239	-0.00015942	-0.00013927	NaN	1.4396	247	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18860	+		7317	10754	4192	4286							-0.19440960814961272
GCSCCCFP	8	Unmodified						0	0	0			REV__ENSG00000176723|ENST00000315678|ZNF843	REV__ENSG00000176723|ENST00000315678|ZNF843	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.229249	818.221972	1.0838	0.00088791	6.879	0.0056355	7.9628	0.0065234	819.2348661993622	33.985	0.2414	33.984	33.936	34.177	-0.0012474	576	70	1.2765218	0.041362524	1.2750024	259.95593		8.423218	-0.001239	0.00013598	0.00013927	NaN	1.4396	288	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19153	+		7318	10754	4192	4286							-0.19440960814961272
GCSGSCHN	8	Unmodified	_GCSGSCHN_					0	0	0			REV__nc|ENSG00000198788|Q02817|MUC2	REV__nc|ENSG00000198788|Q02817|MUC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.2450336851	1	764.245034	763.237757	1.6073	0.0012284	-10.165	-0.0077689	-8.5581	-0.0065405	764.237572118607	33.358	0.048248	33.355	33.307	33.355	-0.0024796	624	37	1.247731	0.021611571	1.2462115	254.39497	0	4.406296						53	3	2	NaN	NaN	NaN	0.84887	1	4179	4179		0.32989	0.099748	1	3521.4	+		7319	13214	4193	4287	5832	5832					-0.15333214982058507
GCSYGCSSC	9	Unmodified	_GCSYGCSSC_					0	0	0			REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	REV__nc|ENSG00000284629|A0A286YEY9|SCYGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.2477358015001	1	866.247736	865.240459	0.81034	0.00070195	1.4158	0.0012265	2.2262	0.0019284	866.2490665641367	33.237	0.14481	33.235	33.162	33.307	-0.0024757	507	52	1.3178225	0.030484319	1.316303	268.12567	0	6.202362						132	7	2	NaN	NaN	NaN	0.6907	1	5464	5464		0	0	1	9527.5	+		7320	13254	4194	4288	5833	5833					-0.19755127639393777
GDAAPEPT	8	Unmodified	_GDAAPEPT_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.3362747584	1	757.336275	756.328998	1.6585	0.0012561	-3.5742	-0.0027068	-1.9156	-0.0014508	757.3349424425813	40.703	0.048035	40.709	40.685	40.733	0.0067558	684	52	1.2116731	0.030680418	1.2101537	247.0831	0	6.256302						65	3	2	NaN	NaN	NaN	0.84727	1	4091	4091		1.2418	0	1	4421.8			7321	674	4195	4289	5834	5834					-0.0589130474141939
GDALGRPP	8	Unmodified	_GDALGRPP_					0	0	0		nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4155281324	1	782.415528	781.408252	1.0014	0.00078349	-7.8158	-0.0061152	-6.8144	-0.0053317	782.4100387996244	33.309	0.096508	33.307	33.259	33.355	-0.0024757	543	61	1.296287	0.035915613	1.2947675	264.1863	0	7.3196716						147	5	3	NaN	NaN	NaN	0.80071	1	4430	4430		9.1232	0	1	14687			7322	7996	4196	4290	5835	5835					0.008803870033716521
GDASTYAH	8	Unmodified	_GDASTYAH_					0	0	0		nc|ENSG00000182132|Q9NZI2-3|KCNIP1;ENSG00000182132|ENST00000328939|KCNIP1;nc|ENSG00000182132|Q9NZI2-4|KCNIP1;nc|ENSG00000182132|Q9NZI2|KCNIP1	nc|ENSG00000182132|Q9NZI2-3|KCNIP1	nc|ENSG00000182132|Q9NZI2-3|KCNIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.1748496177	2	411.17485	820.335146	0.66723	0.00027435	7.0983	0.0029187	7.7656	0.003193	411.17767224226435	32.031	0.12068	32.027	31.979	32.099	-0.0037613	1425	31	0.7599118	0.01853484	0.75839233	309.48343	0	7.548584						82	6	2	NaN	NaN	NaN	0.8439	1	4907	4907		3.1533	0.36816	1	8414.1			7323	5250	4197	4291	5836	5836					-0.0822078650990079
GDDPPASC	8	Unmodified	_GDDPPASC_					0	0	0		nc|ENSG00000249242|B9EJG8-2|TMEM150C;ENSG00000249242|ENST00000449862|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.27704532	1	761.277045	760.269769	2.2668	0.0017257	-1.982	-0.0015088	0.28482	0.00021682	761.2755349115735	26.046	0.096575	26.035	25.987	26.083	-0.011135	642	91	1.2369217	0.054086804	1.2354022	252.20847	0	11.028305						173	5	2	NaN	NaN	NaN	0.84455	1	4140	4140		2.7852	1.3456	1	18779			7324	6098	4198	4292	5837	5837					-0.11995524027258853
GDDVTTLL	8	Unmodified	_GDDVTTLL_					0	0	0			REV__ENST00000531216.1_1_11:18105066-18108741:-|nuORF	REV__ENST00000531216.1_1_11:18105066-18108741:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4250897657001	1	833.42509	832.417813	1.6189	0.0013492	-1.2955	-0.0010797	0.32336	0.0002695	833.4239756535337	24.092	0.14478	24.092	24.044	24.188	0	486	40	1.3303722	0.023296595	1.3303722	270.84598	0	4.7428894						91	7	2	NaN	NaN	NaN	0.27293	1	5166	5166		44.247	13.456	1	7135.4	+		7325	10446	4199	4293	5838	5838					-0.005098895017454197
GDEGCGAC	8	Unmodified	_GDEGCGAC_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.2072511952999	1	711.207251	710.199975	-0.42563	-0.00030271	-6.9267	-0.0049263	-7.3523	-0.005229	711.2018056137504	58.626	0.12011	58.626	58.578	58.698	-0.00045776	450	52	1.3518641	0.030432343	1.3503447	275.9894	0	6.212921						103	6	2	NaN	NaN	NaN	0.84876	1	3362	3362		0.39566	0	1	6860.1			7326	3136	4200	4294	5839	5839					-0.16671725967523798
GDFDACGSQSR	11	Unmodified	_GDFDACGSQSR_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7301943359	2	571.730194	1141.44584	0.8715	0.00049826	-8.3316	-0.0047634	-7.4601	-0.0042652	572.2267930948697	31.477	0.096523	31.477	31.452	31.549	0	1245	43	0.87076044	0.025780857	0.87076044	352.98386	0	10.450897						128	5	4	NaN	NaN	NaN	0.75376	1	14489	14489		3.9281	1.4666	1	8853.3			7327	7902	4201	4295	5840	5840					-0.1192293458398126
GDFDACGSQSR	11	Unmodified						0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.730194	1141.44584	0.67558	0.00038625	-7.4999	-0.0042879	-6.8243	-0.0039017	572.2274940274929	31.476	0.072401	31.471	31.447	31.519	-0.0044155	1239	40	0.87444305	0.023932874	0.8729236	354.47668		9.701752	-0.002738	0.00047237	0.0010816	NaN	3.9281	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7418.2			7328	7902	4201	4295							-0.1192293458398126
GDGGGGLM	8	Unmodified	_GDGGGGLM_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5|ARID1B	REV__nc|ENSG00000049618|Q8NFD5|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	332.14196392805	2	332.141964	662.269375	2.1645	0.00071891	-0.95226	-0.00031629	1.2122	0.00040263	332.1406397806329	30.655	0.096542	30.649	30.601	30.698	-0.0057545	1524	34	0.698637	0.020460427	0.69711757	285.64157	0	8.365356						56	5	2	NaN	NaN	NaN	0.84876	1	2288	2288		0.39566	0	1	3059.2	+		7329	8490	4202	4296	5841	5841					-0.07526898956450623
GDGGLKIR	8	Unmodified	_GDGGLKIR_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.24032691444995	2	408.240327	814.466101	1.3975	0.0005705	4.5248	0.0018472	5.9222	0.0024177	408.2430076328481	54.524	0.1445	54.524	54.5	54.644	0	1404	40	0.77288127	0.024075806	0.77288127	314.8027	0	9.806335						137	7	3	NaN	NaN	NaN	0.84455	1	4946	4946		2.7852	0.32367	1	16147	+		7330	10349	4203	4297	5842	5842					0.05144648928796869
GDIPKSYTY	9	Unmodified	_GDIPKSYTY_					0	0	0		ENST00000435954.2_1_6:54350144-54350642:-|nuORF	ENST00000435954.2_1_6:54350144-54350642:-|nuORF	ENST00000435954.2_1_6:54350144-54350642:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2558395929001	2	522.25584	1042.49713	1.8931	0.00098869	-0.54546	-0.00028487	1.3477	0.00070382	522.2563552866172	16.634	0.1439	16.621	16.573	16.717	-0.013294	1290	40	0.84311575	0.023976922	0.8415963	342.16428	0	9.730621						99	7	2	NaN	NaN	NaN	0.61852	1	10106	10106		4.7291	1.9439	1	8764.6			7331	6991	4204	4298	5843	5843					-0.022422425476179342
GDLSAYEAEL	10	Unmodified	_GDLSAYEAEL_					0	0	0		ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.L1401Yfs*3|1|0.8|ENSG00000119397|chr9:121154742-121154743|TG/-|frameshift_variant;CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL	ENST00000373851.6_1_9:123874787-123912836:+|nuORF	ENST00000373851.6_1_9:123874787-123912836:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4891465854998	1	1067.48915	1066.48187	2.2356	0.0023865	5.7424	0.00613	7.978	0.0085165	1067.4964901115413	25.491	0.07239	25.491	25.443	25.515	0	180	43	1.5121819	0.024816751	1.5121819	306.76044	0	5.0343018						69	4	2	NaN	NaN	NaN	0.67523	1	11392	11392		9.746	0	1	4459.4			7332	172	4205	4299	5844	5844					-0.04871154135480538
GDNDAPPG	8	Unmodified	_GDNDAPPG_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3002236031	1	742.300224	741.292947	-0.22992	-0.00017067	-0.87523	-0.00064968	-1.1051	-0.00082035	742.3001552240115	55.602	0.12013	55.602	55.554	55.674	-0.00059128	531	76	1.3034686	0.04489684	1.3019491	265.89792	0	9.15863						232	6	3	NaN	NaN	NaN	0.84756	1	3852	3852		1.072	0.14616	1	18221			7333	517	4206	4300	5845	5845					-0.08804761918281656
GDPAPGGAGP	10	Unmodified	_GDPAPGGAGP_					0	0	0		ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.18521733875	2	398.185217	794.355882	1.7307	0.00068913	3.8196	0.0015209	5.5503	0.00221	398.1871865090185	28.412	0.31372	28.412	28.363	28.677	0	1419	88	0.76361835	0.053771615	0.76361835	311.16006	0	21.91092						599	14	4	NaN	NaN	NaN	0.75316	1	4675	4675		4.4131	1.2597	1	304510			7334	7024	4207	4301	5846	5846					-0.049521961302275486
GDPAPGGAGP	10	Unmodified						0	0	0		ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	ENST00000446546.2_1_10:75545483-75546011:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	398.185217	794.355882	1.8354	0.00073083	3.9534	0.0015742	5.7888	0.002305	398.18694552157365	28.797	0.048244	28.789	28.74	28.789	-0.0083504	1419	31	0.76361835	0.018530905	0.7620989	311.16006		7.550995	0.18852	8.2742E-05	-0.00075972	NaN	4.4131	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3014.4			7335	7024	4207	4301							-0.049521961302275486
GDPGNPPEF	9	Unmodified	_GDPGNPPEF_					0	0	0		nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3;ENST00000543005.5_1_12:124118377-124132684:+|nuORF;GTF2H3|p.E114Gfs*5|1|0.34|ENSG00000111358|chr12:123648103-123648103|A/-|frameshift_variant;ENST00000537695.5_1_12:124118406-124135602:+|nuORF;ENST00000537368.5_1_12:124118406-124135617:+|nuORF	nc|ENSG00000111358|Q13889-2|GTF2H3	nc|ENSG00000111358|Q13889-2|GTF2H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.3999376477001	1	929.399938	928.392661	2.1601	0.0020076	-11.948	-0.011104	-9.7876	-0.0090966	929.3883013599018	26.432	0.21718	26.432	26.36	26.577	0	333	73	1.4215236	0.042787552	1.4215236	288.9169	0	8.69632						212	10	3	NaN	NaN	NaN	0.41766	1	6548	6548		13.003	2.3979	1	17548			7336	1804	4208	4302	5847	5847					-0.07439944304326218
GDPGYEEF	8	Unmodified	_GDPGYEEF_					0	0	0			REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.3574041310001	1	913.357404	912.350128	1.5634	0.001428	4.6342	0.0042327	6.1976	0.0056606	913.3612455433222	24.478	0.16893	24.465	24.441	24.61	-0.012747	339	67	1.4179583	0.039230227	1.4164388	288.26624	0	7.9753723						169	8	2	NaN	NaN	NaN	0.74229	1	6148	6148		16.417	3.8288	1	14354	+		7337	12602	4209	4303	5848	5848					-0.10955339432553046
GDPGYEEF	8	Unmodified						0	0	0			REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	913.357404	912.350128	1.4751	0.0013473	4.7264	0.0043169	6.2015	0.0056642	913.3619286310659	24.478	0.16879	24.478	24.454	24.623	0	345	70	1.4143922	0.041015625	1.4143922	287.5413		8.338348	0.0064687	3.8173E-05	-0.0010233	NaN	16.417	199	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19810	+		7338	12602	4209	4303							-0.10955339432553046
GDPGYEEF	8	Unmodified						0	0	0			REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	REV__ENST00000521717.1_1_8:33293900-33294137:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	913.357404	912.350128	1.5634	0.001428	4.6342	0.0042327	6.1976	0.0056606	913.3612455433222	24.478	0.16893	24.465	24.441	24.61	-0.012747	339	67	1.4179583	0.039230227	1.4164388	288.26624		7.9753723	-0.0064687	-4.6048E-05	0.0010233	NaN	16.417	169	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14354	+		7339	12602	4209	4303							-0.10955339432553046
GDPVPGGE	8	Unmodified	_GDPVPGGE_					0	0	0			REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3257100721002	1	727.32571	726.318434	1.4692	0.0010686	-1.7736	-0.00129	-0.30434	-0.00022136	727.3238653874274	55.629	0.14417	55.629	55.532	55.677	0	522	85	1.3088527	0.050276518	1.3088527	267.0962	0	10.259857						196	7	2	NaN	NaN	NaN	0.80692	1	3704	3704		8.2903	2.8244	1	19149	+		7340	11814	4210	4304	5849	5849					-0.05567287395842868
GDPVPGGE	8	Unmodified						0	0	0			REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	727.32571	726.318434	1.4692	0.0010686	-1.7736	-0.00129	-0.30434	-0.00022136	727.3238653874274	55.629	0.14417	55.629	55.532	55.677	0	522	85	1.3088527	0.050276518	1.3088527	267.0962		10.259857	0.0013741	-0.00040926	-0.00013745	NaN	8.2903	196	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19149	+		7341	11814	4210	4304							-0.05567287395842868
GDPVPGGE	8	Unmodified						0	0	0			REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	REV__ENST00000355610.8_1_X:106243262-106243358:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	727.32571	726.318434	-0.37279	-0.00027114	-0.49911	-0.00036302	-0.87191	-0.00063416	727.3261135790503	55.626	0.12013	55.626	55.554	55.674	-0.00059128	519	61	1.310647	0.035900235	1.3091276	267.46234		7.326111	-0.0013741	0.00051769	0.00013745	NaN	8.2903	136	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11646	+		7342	11814	4210	4304							-0.05567287395842868
GDPYYYETFEI	11	Unmodified	_GDPYYYETFEI_					0	0	0			REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.2029642905666	3	466.202964	1395.58706	1.4598	0.00068059	1.8871	0.00087977	3.3469	0.0015604	466.203976074972	23.103	0.048103	23.09	23.065	23.114	-0.013294	1380	31	0.7876915	0.018504798	0.78617203	477.91882	0	11.2274475						40	3	2	NaN	NaN	NaN	0.77633	1	19084	19084		0.88464	0.073288	1	3458.6	+		7343	9102	4211	4305	5850	5850					-0.09490657729725172
GDPYYYETFEI	11	Unmodified						0	0	0			REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	466.202964	1395.58706	1.6423	0.00076563	4.0059	0.0018676	5.6482	0.0026332	466.2043151487534	23.079	0.07217	23.079	23.031	23.103	0	1380	37	0.7876915	0.02220571	0.7876915	477.91882		13.472961	-0.0051092	0.0019255	0.00075972	NaN	0.88464	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3456.4	+		7344	9102	4211	4305							-0.09490657729725172
GDPYYYETFEI	11	Unmodified						0	0	0			REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	466.202964	1395.58706	1.4598	0.00068059	1.8871	0.00087977	3.3469	0.0015604	466.203976074972	23.103	0.048103	23.09	23.065	23.114	-0.013294	1380	31	0.7876915	0.018504798	0.78617203	477.91882		11.2274475	0.0051092	-0.0010379	-0.00075972	NaN	0.88464	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3458.6	+		7345	9102	4211	4305							-0.09490657729725172
GDQGPQGP	8	Unmodified	_GDQGPQGP_					0	0	0		ENST00000467819.5_1_20:61467799-61472081:+|nuORF;ENST00000466192.5_1_20:61463352-61472081:+|nuORF;ENSG00000092758|ENST00000649368|COL9A3	ENST00000467819.5_1_20:61467799-61472081:+|nuORF	ENST00000467819.5_1_20:61467799-61472081:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3318580825	1	755.331858	754.324582	1.5145	0.001144	3.4113	0.0025767	4.9258	0.0037206	755.334013291432	28.17	0.048225	28.161	28.137	28.185	-0.0089779	999	58	1.0210962	0.034682035	1.0195768	208.23068	0	7.0726624						84	3	2	NaN	NaN	NaN	0.8439	1	4056	4056		3.1533	0	1	7087.3			7346	1099	4212	4306	5851	5851					-0.0624076916433296
GDQYAQVL	8	Unmodified	_GDQYAQVL_					0	0	0			REV__NPC1-ANKRD29|1|fusion	REV__NPC1-ANKRD29|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.436323154	1	893.436323	892.429047	2.1341	0.0019067	-12.086	-0.010798	-9.9516	-0.0088911	893.4255263665465	25.684	0.0965	25.672	25.624	25.721	-0.0116	378	76	1.3947657	0.044662952	1.3932463	283.6454	0	9.082825						133	5	2	NaN	NaN	NaN	0.69898	1	5836	5836		19.118	0	1	8630.6	+		7347	13273	4213	4307	5852	5852					-0.021470674076226715
GDRFAYCATL	10	Unmodified	_GDRFAYCATL_					0	0	0		ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	ENSG00000150627|ENST00000508596|WDR17	ENSG00000150627|ENST00000508596|WDR17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7607661828	2	558.760766	1115.50698	2.0186	0.0011279	-3.5388	-0.0019773	-1.5202	-0.00084942	558.7584273972536	26.07	0.14483	26.07	26.022	26.167	0	1206	103	0.894683	0.06259036	0.894683	362.78204	0	25.379547						248	7	2	NaN	NaN	NaN	0.41164	1	13485	13485		23.118	0	1	42631			7348	3710	4214	4308	5853	5853					-0.04615377813888699
GDSYPGPG	8	Unmodified	_GDSYPGPG_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3100600079001	1	749.31006	748.302784	0.043884	3.2882E-05	-4.0464	-0.003032	-4.0025	-0.0029991	749.3069727324706	58.051	0.048004	58.05	58.026	58.074	-0.00048065	489	61	1.3285799	0.03583896	1.3270605	270.97437	0	7.3096313						65	3	2	NaN	NaN	NaN	0.84876	1	3938	3938		0.39566	0	1	6389.4			7349	2087	4215	4309	5854	5854					-0.08143573912889224
GDVEAMYP	8	Unmodified	_GDVEAMYP_					0	0	0		nc|ENSG00000179388|Q06889-2|EGR3;ENSG00000179388|ENST00000317216|EGR3	nc|ENSG00000179388|Q06889-2|EGR3	nc|ENSG00000179388|Q06889-2|EGR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.1891110859	2	441.189111	880.363669	0.13291	5.8639E-05	0.37129	0.00016381	0.50421	0.00022245	441.1894331815585	35.217	0.14478	35.217	35.168	35.313	0	1401	55	0.77473325	0.033344746	0.77473325	315.16595	0	13.56485						133	7	2	NaN	NaN	NaN	0.84207	1	5803	5803		3.5732	0.41988	1	13463			7350	5150	4216	4310	5855	5855					-0.08129804924976725
GDVGPMNS	8	Unmodified	_GDVGPMNS_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.3243298636	1	776.32433	775.317053	2.0574	0.0015972	-1.0067	-0.00078153	1.0507	0.00081566	776.3232772463965	27.446	0.096481	27.436	27.411	27.508	-0.010126	570	34	1.2801172	0.019771576	1.2785977	260.92624	0	4.0300293						57	5	2	NaN	NaN	NaN	0.81251	1	4356	4356		7.5404	1.45	1	3162.1	+		7351	13126	4217	4311	5856	5856					-0.07959244756261796
GEAGEWSG	8	Unmodified	_GEAGEWSG_					0	0	0			REV__ENST00000319540.8_1_4:83552326-83552455:-|nuORF	REV__ENST00000319540.8_1_4:83552326-83552455:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	792.3158736673001	1	792.315874	791.308597	2.2792	0.0018058	5.4723	0.0043358	7.7515	0.0061416	792.3200280315648	25.998	0.1207	25.998	25.998	26.119	0	534	64	1.3016734	0.03771341	1.3016734	265.22675	0	7.6844177						119	6	2	NaN	NaN	NaN	0.80692	1	4635	4635		8.2903	2.0401	1	8213.5	+		7352	11712	4218	4312	5857	5857					-0.09540475401217918
GEAPAAPP	8	Unmodified	_GEAPAAPP_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3515308921	1	709.351531	708.344254	0.74967	0.00053178	4.3223	0.003066	5.0719	0.0035978	709.354996262669	30.366	0.19306	30.359	30.335	30.528	-0.0064106	705	67	1.1990347	0.039744258	1.1975152	244.80064	0	8.114395						157	9	2	NaN	NaN	NaN	0.8439	1	3323	3323		3.1533	0	1	14516			7353	567	4219	4313	5858	5858					-0.02158393153581528
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000276410|ENST00000615966|H2BC3;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;nc|ENSG00000220323|Q6DRA6|H2BC19P;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000261716|Q6DN03|H2BC20P	ENSG00000274641|ENST00000616182|H2BC17	ENSG00000274641|ENST00000616182|H2BC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.25142291699996	2	502.251423	1002.48829	1.2215	0.0006135	-2.1718	-0.0010908	-0.95034	-0.00047731	502.25038509576694	12.868	0.2402	12.868	12.844	13.084	0	1287	43	0.8449601	0.025819898	0.8449601	343.0911	0	10.484009						293	11	3	NaN	NaN	NaN	0.27507	1	8691	8691		20.513	1.2286	1	59595			7354	2429	4220	4314	5859	5859					-0.01285171393442397
GEASRLAHY	9	Unmodified	_GEASRLAHY_					0	0	0		ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000276410|ENST00000615966|H2BC3;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;nc|ENSG00000220323|Q6DRA6|H2BC19P;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;nc|ENSG00000261716|Q6DN03|H2BC20P	ENSG00000274641|ENST00000616182|H2BC17	ENSG00000274641|ENST00000616182|H2BC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.25142291699996	2	502.251423	1002.48829	1.0467	0.00052572	-0.204	-0.00010246	0.84274	0.00042327	502.2513786397813	12.966	0.2636	12.957	12.885	13.148	-0.00947	1284	46	0.8468043	0.027662694	0.8452849	343.8399	0	11.232269						338	12	4	NaN	NaN	NaN	0.059222	1	8518	8518		42.995	16.263	1	60758			7355	2429	4220	4314	5860	5860					-0.01285171393442397
GEASTYRFIWP	11	Unmodified	_GEASTYRFIWP_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.8874219487334	3	442.887422	1325.64044	1.4699	0.00065099	5.6256	0.0024915	7.0954	0.0031425	443.2238872541535	37.961	0.096142	37.964	37.916	38.012	0.0034256	1407	31	0.77102906	0.018522859	0.7695096	468.0509	0	11.244232						89	5	3	NaN	NaN	NaN	0.73057	1	18328	18328		2.3495	0.11057	1	5547	+		7356	13089	4221	4315	5861	5861					-0.00935815436514531
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.77199118360005	2	495.771991	989.529429	1.8747	0.00092942	-3.5012	-0.0017358	-1.6265	-0.00080638	495.7699601082711	19.708	0.16809	19.708	19.66	19.828	0	1314	64	0.8283535	0.03878224	0.8283535	336.40775	0	15.750092						211	8	3	NaN	NaN	NaN	0.070055	1	8198	8198		40.154	19.705	1	31949			7357	6065	4222	4316	5862	5862					0.03424589646044751
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.77199118360005	2	495.771991	989.529429	1.0976	0.00054416	-1.7971	-0.00089096	-0.69952	-0.0003468	495.7707150502974	19.731	0.12026	19.717	19.669	19.789	-0.014141	1314	67	0.8283535	0.040631235	0.8268341	336.4077	0	16.501007						178	6	3	NaN	NaN	NaN	0.27608	1	8032	8032		20.449	9.2783	1	32985			7358	6065	4222	4316	5863	5863					0.03424589646044751
GECHDGSC	8	Unmodified	_GECHDGSC_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2396139562001	1	807.239614	806.232337	1.5395	0.0012427	-6.2417	-0.0050386	-4.7023	-0.0037959	807.2348923026376	36.902	0.38472	36.904	36.712	37.096	0.0022469	594	94	1.265731	0.055743456	1.2642115	257.8218	0	11.3546295						638	17	3	NaN	NaN	NaN	0.84455	1	4732	4732		2.7852	0	1	96428			7359	4623	4223	4317	5864	5864					-0.17852938564521992
GEDLGVAFW	9	Unmodified	_GEDLGVAFW_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4676232824	1	993.467623	992.460347	1.5914	0.001581	3.5619	0.0035386	5.1533	0.0051196	993.4711330122332	31.959	0.21722	31.959	31.911	32.128	0	261	82	1.4642475	0.047985315	1.4642475	297.3193	0	9.743561						298	10	3	NaN	NaN	NaN	0.020004	1	8304	8304		71.993	45.261	1	39157			7360	5990	4224	4318	5865	5865					-0.03618494373529302
GEDLGVAFW	9	Unmodified	_GEDLGVAFW_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4676232824	1	993.467623	992.460347	0.93824	0.00093212	3.4183	0.0033959	4.3565	0.0043281	993.4716639947587	31.958	0.16891	31.954	31.906	32.075	-0.0037613	258	79	1.4660252	0.046200752	1.4645058	297.6803	0	9.381165						267	8	3	NaN	NaN	NaN	0.032764	1	8138	8138		55.494	23.933	1	36287			7361	5990	4224	4318	5866	5866					-0.03618494373529302
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7880351783001	2	589.788035	1177.56152	1.8293	0.0010789	-2.2232	-0.0013112	-0.39387	-0.0002323	589.7863090568482	13.373	0.19214	13.373	13.325	13.517	0	1236	52	0.876284	0.031286716	0.876284	355.0929	0	12.678162						266	9	4	NaN	NaN	NaN	0.036001	1	15742	15742		57.081	31.4	1	39566			7362	1628	4225	4319	5867	5867					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.5277822744	3	393.527782	1177.56152	1.4854	0.00058453	0.2005	7.8902E-05	1.6859	0.00066343	393.8620039604154	13.349	0.19214	13.349	13.325	13.517	0	1431	52	0.75620437	0.03152466	0.75620437	459.6457	0	19.161743						162	9	3	NaN	NaN	NaN	0.44412	1	15744	15744		13.638	4.0261	1	19840			7363	1628	4225	4319	5868	5868					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7880351783001	2	589.788035	1177.56152	1.0069	0.00059387	-1.375	-0.00081098	-0.36811	-0.0002171	589.7867842289173	13.349	0.21598	13.339	13.315	13.531	-0.010098	1236	43	0.876284	0.02576971	0.8747646	355.09286	0	10.442535						244	10	3	NaN	NaN	NaN	0.011315	1	15169	15169		69.574	43.893	1	37033			7364	1628	4225	4319	5869	5869					-0.02016087461470306
GEDVETSKKW	10	Unmodified	_GEDVETSKKW_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.5277822744	3	393.527782	1177.56152	1.16	0.00045648	-1.4566	-0.00057321	-0.29661	-0.00011673	393.5273246671122	13.349	0.16797	13.339	13.315	13.483	-0.010098	1431	37	0.75620437	0.022246659	0.7546849	459.64572	0	13.522247						186	8	3	NaN	NaN	NaN	0.58645	1	15170	15170		20.936	6.0822	1	25835			7365	1628	4225	4319	5870	5870					-0.02016087461470306
GEEIAKII	8	Unmodified	_GEEIAKII_					0	0	0		tr|U7SKF8|U7SKF8_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01978PE=4SV=1	tr|U7SKF8|U7SKF8_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01978PE=4SV=1	tr|U7SKF8|U7SKF8_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01978PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5087598156002	1	872.50876	871.501483	-0.5593	-0.00048799	9.6767	0.008443	9.1174	0.007955	872.5162455630146	52.881	0.11987	52.881	52.833	52.952	-0.00045776	351	55	1.4108255	0.03210771	1.409306	287.01587	0	6.531952						115	6	2	NaN	NaN	NaN	0.84692	1	5549	5549		1.4396	0	1	9103.4			7366	13755	4226	4320	5871	5871					0.06059266665965879
GEELCVFEIA	10	Unmodified	_GEELCVFEIA_					0	0	0			REV__nc|ENSG00000113595|P36406-3|TRIM23	REV__nc|ENSG00000113595|P36406-3|TRIM23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2628073452502	2	555.262807	1108.51106	0.92172	0.0005118	-3.9334	-0.0021841	-3.0117	-0.0016723	555.2605568850886	32.61	0.096542	32.607	32.51	32.607	-0.0031052	1254	55	0.8652351	0.033150375	0.86371565	350.86835	0	13.443054						108	5	2	NaN	NaN	NaN	0.56921	1	12842	12842		16.584	1.4088	1	15196	+		7367	9153	4227	4321	5872	5872					-0.03885333110815736
GEEPPAAA	8	Unmodified	_GEEPPAAA_					0	0	0		nc|ENSG00000130487|Q96G42|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B	nc|ENSG00000130487|Q96G42|KLHDC7B	nc|ENSG00000130487|Q96G42|KLHDC7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3413601363	1	741.34136	740.334084	1.2616	0.00093531	5.5565	0.0041193	6.8182	0.0050546	741.3455537037082	29.329	0.12065	29.329	29.28	29.401	0	621	43	1.2495319	0.025208116	1.2495319	254.9012	0	5.1423798						94	6	2	NaN	NaN	NaN	0.84455	1	3910	3910		2.7852	1.083	1	6813.4			7368	2646	4228	4322	5873	5873					-0.04647000878810559
GEEVTGSM	8	Unmodified	_GEEVTGSM_					0	0	0		POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3345601989002	1	809.33456	808.327284	1.6628	0.0013458	1.6673	0.0013494	3.3302	0.0026952	809.3349533153179	24.237	0.048231	24.237	24.237	24.285	0	570	85	1.2801172	0.05030334	1.2801172	260.7408	0	10.246033						124	3	3	NaN	NaN	NaN	0.74229	1	4865	4865		16.417	3.4138	1	15919			7369	574	4229	4323	5874	5874					-0.0845468182166087
GEFGGFGSV	9	Unmodified	_GEFGGFGSV_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.3835593020001	1	856.383559	855.376283	1.991	0.0017051	1.4495	0.0012414	3.4406	0.0029464	856.3849054647643	25.009	0.33781	25.009	24.985	25.322	0	459	76	1.3464937	0.044767737	1.3464937	274.00858	0	9.110138						361	15	3	NaN	NaN	NaN	0.011942	1	5466	5466		87.021	49.718	1	59095			7370	1360;4142	4230	4324	5875	5875					-0.05719025470421002
GEFGGFGSV	9	Unmodified	_GEFGGFGSV_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.3835593020001	1	856.383559	855.376283	1.3773	0.0011795	0.35458	0.00030365	1.7318	0.0014831	856.3829165298654	25.008	0.16887	24.996	24.972	25.141	-0.012011	456	76	1.348284	0.044772625	1.3467646	274.37292	0	9.1111145						279	8	4	NaN	NaN	NaN	0.0062755	1	5328	5328		99.986	62.683	1	46400			7371	1360;4142	4230	4324	5876	5876					-0.05719025470421002
GEGAFFVI	8	Unmodified	_GEGAFFVI_					0	0	0		ENST00000488049.1_1:206627651-206627753:+|nuORF	ENST00000488049.1_1:206627651-206627753:+|nuORF	ENST00000488049.1_1:206627651-206627753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.4297812131002	1	839.429781	838.422505	1.563	0.001312	1.2483	0.0010478	2.8113	0.0023599	839.4291530759238	28.822	0.12067	28.822	28.774	28.894	0	468	52	1.3411216	0.030442119	1.3411216	273.00266	0	6.1968994						154	6	3	NaN	NaN	NaN	0.65075	1	5248	5248		22.126	8.3893	1	14117			7372	7246	4231	4325	5877	5877					-0.003169605683183363
GEGAFFVI	8	Unmodified	_GEGAFFVI_					0	0	0		ENST00000488049.1_1:206627651-206627753:+|nuORF	ENST00000488049.1_1:206627651-206627753:+|nuORF	ENST00000488049.1_1:206627651-206627753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.4297812131002	1	839.429781	838.422505	0.87968	0.00073843	1.8545	0.0015567	2.7342	0.0022952	839.4284586769604	28.821	0.14481	28.813	28.765	28.909	-0.0083504	468	58	1.3411216	0.034023523	1.3396021	273.00266	0	6.925934						205	7	3	NaN	NaN	NaN	0.65075	1	5121	5121		22.126	0	1	18260			7373	7246	4231	4325	5878	5878					-0.003169605683183363
GEGEPCGG	8	Unmodified	_GEGEPCGG_					0	0	0		nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2508305695002	1	705.250831	704.243554	1.7253	0.0012168	0.90324	0.00063701	2.6285	0.0018538	705.2512524401557	25.998	0.19305	25.998	25.805	25.998	0	729	103	1.184579	0.061469197	1.184579	241.87605	0	12.551239						327	9	2	NaN	NaN	NaN	0.84945	1	3287	3287		0	0	1	57133			7374	4230	4232	4326	5879	5879					-0.12039793198721327
GEGGGPEP	8	Unmodified	_GEGGGPEP_					0	0	0		nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	nc|ENSG00000166313|O00213-2|APBB1	nc|ENSG00000166313|O00213-2|APBB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.15084320515	2	350.150843	698.287133	1.3848	0.00048488	4.4271	0.0015501	5.8119	0.002035	350.15268063360764	26.867	0.1448	26.867	26.819	26.964	0	1539	55	0.68933374	0.03350073	0.68933374	281.54443	0	13.682709						150	7	3	NaN	NaN	NaN	0.82797	1	3187	3187		5.4659	0	1	18298			7375	4467	4233	4327	5880	5880					-0.07407860429941593
GEGGGPEP	8	Unmodified	_GEGGGPEP_					0	0	0		nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	nc|ENSG00000166313|O00213-2|APBB1	nc|ENSG00000166313|O00213-2|APBB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.15084320515	2	350.150843	698.287133	1.3857	0.0004852	2.0188	0.00070688	3.4045	0.0011921	350.15167042467743	30.607	0.19304	30.601	30.553	30.746	-0.0057545	1539	40	0.68933374	0.024196267	0.6878143	281.54446	0	9.882477						143	9	3	NaN	NaN	NaN	0.84727	1	3120	3120		1.2418	0.84618	1	15063			7376	4467	4233	4327	5881	5881					-0.07407860429941593
GEGGGPEP	8	Unmodified	_GEGGGPEP_					0	0	0		nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	nc|ENSG00000166313|O00213-2|APBB1	nc|ENSG00000166313|O00213-2|APBB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.15084320515	2	350.150843	698.287133	1.4259	0.00049928	5.1394	0.0017996	6.5653	0.0022989	350.152712714983	26.866	0.16895	26.856	26.808	26.976	-0.010645	1539	46	0.68933374	0.027912676	0.6878143	281.54443	0	11.400391						166	8	2	NaN	NaN	NaN	0.8439	1	3122	3122		3.1533	0	1	21390			7377	4467	4233	4327	5882	5882					-0.07407860429941593
GEGGPPGV	8	Unmodified	_GEGGPPGV_					0	0	0		nc|ENSG00000168542|P02461-2|COL3A1;ENSG00000168542|ENST00000304636|COL3A1	nc|ENSG00000168542|P02461-2|COL3A1	nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.16375361515003	2	335.163754	668.312954	1.5088	0.00050569	5.4923	0.0018408	7.001	0.0023465	335.16548730351855	44.304	0.095951	44.304	44.28	44.376	0	1536	37	0.69119483	0.022331417	0.69119483	282.5472	0	9.128662						65	5	2	NaN	NaN	NaN	0.84727	1	2543	2543		1.2418	0	1	4907			7378	4629	4234	4328	5883	5883					-0.034469661876528335
GEGPTDSE	8	Unmodified	_GEGPTDSE_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3;PEG3|p.I648Sfs*90|1|0.24|ENSG00000198300|chr19:56816504-56816504|C/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.3053685605	1	791.305369	790.298092	2.2985	0.0018188	-3.4841	-0.002757	-1.1856	-0.00093817	791.3021701965536	25.974	0.16892	25.974	25.877	26.046	0	567	118	1.2819146	0.07017386	1.2819146	261.20645	0	14.298828						319	8	2	NaN	NaN	NaN	0.80692	1	4626	4626		8.2903	1.4963	1	27802			7379	5767	4235	4329	5884	5884					-0.10544502846323667
GEGSDGNRYCK	11	Unmodified	_GEGSDGNRYCK_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.83662143469996	3	395.836621	1184.48803	0.97814	0.00038718	-4.6709	-0.0018489	-3.6928	-0.0014617	395.8352472867785	30.221	0.21717	30.214	30.118	30.335	-0.0064106	1488	52	0.7209441	0.031576037	0.71942466	438.18378	0	19.19165						183	10	3	NaN	NaN	NaN	0.76488	1	15378	15378		0.9877	0	1	12983	+		7380	10189	4236	4330	5885	5885					-0.09682959175620454
GEGSYREAETF	11	Unmodified	_GEGSYREAETF_					0	0	0		nc|ENSG00000116183|Q9BXP8-2|PAPPA2;PAPPA2|p.G1583Efs*78|1|0.39|ENSG00000116183|chr1:176789840-176789840|G/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	nc|ENSG00000116183|Q9BXP8-2|PAPPA2	nc|ENSG00000116183|Q9BXP8-2|PAPPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2727492548499	2	623.272749	1244.53095	1.6191	0.0010091	-2.4713	-0.0015403	-0.85216	-0.00053113	623.2714927935214	19.276	0.24003	19.276	19.204	19.444	0	1191	73	0.90387505	0.044100344	0.90387505	366.04517	0	17.859467						438	11	4	NaN	NaN	NaN	0.58731	1	17622	17622		14.854	0.8124	1	58498			7381	2069	4237	4331	5886	5886					-0.0815386584654334
GEIQEIVKT	9	Unmodified	_GEIQEIVKT_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.78476420784995	2	508.784764	1015.55498	1.7373	0.0008839	-2.6457	-0.0013461	-0.90845	-0.00046221	508.78441629634153	18.65	0.071968	18.636	18.612	18.684	-0.014061	1317	37	0.8265074	0.022157669	0.82498795	335.54	0	8.995422						83	4	3	NaN	NaN	NaN	0.32672	1	9037	9037		17.198	3.7354	1	8873.2			7382	5351	4238	4332	5887	5887					0.04782019377796587
GELDGLQG	8	Unmodified	_GELDGLQG_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.69287519535	2	394.692875	787.371197	1.7827	0.00070363	-10.663	-0.0042087	-8.8806	-0.0035051	394.68796990678106	26.312	0.048277	26.312	26.312	26.36	0	1443	34	0.7487872	0.020400584	0.7487872	305.1626	0	8.314117						48	3	2	NaN	NaN	NaN	0.81251	1	4591	4591		7.5404	0.67717	1	3858.6	+		7383	10676	4239	4333	5888	5888					-0.03099329333042533
GELDGLQG	8	Unmodified						0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	394.692875	787.371197	1.7827	0.00070363	-10.663	-0.0042087	-8.8806	-0.0035051	394.68796990678106	26.312	0.048277	26.312	26.312	26.36	0	1443	34	0.7487872	0.020400584	0.7487872	305.1626		8.314117	-0.0063612	-0.00019545	0.00075972	NaN	7.5404	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3858.6	+		7384	10676	4239	4333							-0.03099329333042533
GELDGLQG	8	Unmodified						0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	394.692875	787.371197	1.8826	0.00074306	-10.255	-0.0040476	-8.3723	-0.0033045	394.68834073102926	26.336	0.12064	26.324	26.276	26.397	-0.011137	1443	31	0.7487872	0.018546999	0.7472678	305.1626		7.5586853	0.0063612	0.00012689	-0.00075972	NaN	7.5404	81	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5536.5	+		7385	10676	4239	4333							-0.03099329333042533
GELGPAPA	8	Unmodified	_GELGPAPA_					0	0	0			REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3671809563	1	711.367181	710.359904	0.98897	0.00070352	5.3627	0.0038149	6.3517	0.0045184	711.37101915817	32.465	0.096535	32.462	32.462	32.558	-0.0031052	627	43	1.24593	0.025216103	1.2444105	254.36131	0	5.1479645						76	5	2	NaN	NaN	NaN	0.84692	1	3368	3368		1.4396	0	1	5767.5	+		7386	12846	4240	4334	5889	5889					-0.006861066365331681
GELGPAPA	8	Unmodified						0	0	0			REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	REV__ENST00000575277.1_1_16:67976333-67976859:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.367181	710.359904	0.98897	0.00070352	5.3627	0.0038149	6.3517	0.0045184	711.37101915817	32.465	0.096535	32.462	32.462	32.558	-0.0031052	627	43	1.24593	0.025216103	1.2444105	254.36131		5.1479645	-0.014167	-0.0013455	0.00014091	NaN	1.4396	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5767.5	+		7387	12846	4240	4334							-0.006861066365331681
GELPEPLLT	9	Unmodified	_GELPEPLLT_					0	0	0		nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19	nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-5|ARHGAP19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.5298891882	1	968.529889	967.522613	1.0554	0.0010222	1.1672	0.0011305	2.2227	0.0021527	968.5317816900875	29.786	0.07239	29.779	29.731	29.803	-0.0070648	267	70	1.4606913	0.0408895	1.4591719	296.70193	0	8.305634						138	4	3	NaN	NaN	NaN	0.062072	1	7400	7400		41.785	0	1	9950			7388	5957	4241	4335	5890	5890					0.037552319747987895
GEMELLTFR	9	Unmodified	_GEMELLTFR_					0	0	0		ENST00000503699.1_1_4:331733-352211:+|nuORF	ENST00000503699.1_1_4:331733-352211:+|nuORF	ENST00000503699.1_1_4:331733-352211:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2787917604501	2	548.278792	1094.54303	1.0714	0.00058741	4.9494	0.0027137	6.0208	0.0033011	548.2822705469604	24.309	0.048267	24.309	24.285	24.333	0	1242	115	0.87260187	0.06990099	0.87260187	353.9111	0	28.350555						158	3	2	NaN	NaN	NaN	0.33629	1	12610	12610		16.584	5.9792	1	25314			7389	7318	4242	4336	5891	5891					-0.00045920637035123946
GENPVLIF	8	Unmodified	_GENPVLIF_					0	0	0		ENST00000414861.6_3_2:152266501-152267778:+|nuORF;ENST00000444746.6_1_2:152266453-152266938:+|nuORF;ENST00000243326.9_1_2:152266501-152266783:+|nuORF	ENST00000414861.6_3_2:152266501-152267778:+|nuORF	ENST00000414861.6_3_2:152266501-152267778:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4825450651001	1	888.482545	887.475269	1.3212	0.0011739	3.8383	0.0034103	5.1595	0.0045841	888.4854276206788	36.806	0.16838	36.807	36.759	36.928	0.0016785	327	58	1.425088	0.03385365	1.4235686	289.83636	0	6.885193						178	8	2	NaN	NaN	NaN	0.67593	1	5788	5788		20.555	2.7751	1	24406			7390	6265	4243	4337	5892	5892					0.02702997494475312
GEPAAAEP	8	Unmodified	_GEPAAAEP_					0	0	0		ENST00000327359.7_1_14:105695225-105781678:-|nuORF;ENST00000379937.6_3_14:105695225-105767012:-|nuORF;ENST00000548421.2_1_14:105722813-105767174:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3413601363	1	741.34136	740.334084	1.513	0.0011217	-5.1093	-0.0037877	-3.5963	-0.0026661	741.3371299513504	29.667	0.096523	29.667	29.667	29.763	0	624	46	1.247731	0.027010202	1.247731	254.53387	0	5.5099945						81	5	2	NaN	NaN	NaN	0.84455	1	3908	3908		2.7852	1.1148	1	5134.5			7391	6496	4244	4338	5893	5893					-0.04647000878810559
GEPDLGVAL	9	Unmodified	_GEPDLGVAL_					0	0	0			REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4567242451	1	870.456724	869.449448	1.7127	0.0014908	-0.85941	-0.00074808	0.85325	0.00074272	870.4561356421104	23.778	0.19272	23.778	23.706	23.899	0	462	55	1.3447032	0.032231092	1.3447032	273.57416	0	6.557251						205	9	3	NaN	NaN	NaN	0.056143	1	5654	5654		44.302	0	1	25563	+		7392	8195	4245	4339	5894	5894					0.009501032521825437
GEPDLGVAL	9	Unmodified						0	0	0			REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	870.456724	869.449448	1.7127	0.0014908	-0.85941	-0.00074808	0.85325	0.00074272	870.4561356421104	23.778	0.19272	23.778	23.706	23.899	0	462	55	1.3447032	0.032231092	1.3447032	273.57416		6.557251	-0.0053653	-0.00041183	-0.00013554	NaN	44.302	205	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25563	+		7393	8195	4245	4339							0.009501032521825437
GEPDYFPSQPH	11	Unmodified	_GEPDYFPSQPH_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.27783463275	2	637.277835	1272.54112	1.6863	0.0010747	2.163	0.0013784	3.8493	0.0024531	637.2804179075305	24.019	0.31367	24.019	23.899	24.213	0	1146	73	0.93142134	0.044043243	0.93142134	377.10956	0	17.832031						390	14	4	NaN	NaN	NaN	0.6085	1	18270	18270		13.463	0	1	49739	+		7394	11400	4246	4340	5895	5895					-0.08425258121292245
GEPLGEVYL	9	Unmodified	_GEPLGEVYL_					0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4985890598001	1	976.498589	975.491313	1.6451	0.0016064	-0.40834	-0.00039874	1.2368	0.0012077	976.4979849674162	27.518	0.26543	27.508	27.436	27.702	-0.009552	255	109	1.4678029	0.06403148	1.4662834	298.11227	0	13.004852						546	12	2	NaN	NaN	NaN	0.14301	1	7604	7604		29.598	1.8095	1	157510	+		7395	11402	4247	4341	5896	5896					0.002586589407201245
GEPLGEVYL	9	Unmodified						0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	976.498589	975.491313	1.9712	0.0019248	-0.98188	-0.0009588	0.9893	0.00096605	976.497314193591	27.495	0.24136	27.495	27.422	27.664	0	258	121	1.4660252	0.07116878	1.4660252	297.75125		14.454468	-0.0068899	-0.0002796	-0.00012909	NaN	29.598	567	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166690	+		7396	11402	4247	4341							0.002586589407201245
GEPLGEVYL	9	Unmodified						0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	976.498589	975.491313	1.6451	0.0016064	-0.40834	-0.00039874	1.2368	0.0012077	976.4979849674162	27.518	0.26543	27.508	27.436	27.702	-0.009552	255	109	1.4678029	0.06403148	1.4662834	298.11227		13.004852	0.0068899	0.00028046	0.00012909	NaN	29.598	546	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157510	+		7397	11402	4247	4341							0.002586589407201245
GERMDAFFFL	10	Unmodified	_GERMDAFFFL_					0	0	0			REV__ENST00000550653.1_1_12:69993626-69995102:+|nuORF	REV__ENST00000550653.1_1_12:69993626-69995102:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.7920663112001	2	616.792066	1231.56958	0.58424	0.00036035	-1.2925	-0.00079722	-0.70829	-0.00043687	616.7925935784256	30.076	0.1448	30.07	29.997	30.142	-0.0064087	1119	49	0.9479278	0.029330492	0.94640833	383.92966	0	11.879456						219	7	4	NaN	NaN	NaN	0.44258	1	16579	16579		21.835	6.3723	1	49124	+		7398	12738	4248	4342	5897	5897					-0.036942317457032914
GERPYKCGDC	10	Unmodified	_GERPYKCGDC_					0	0	0		ZIK1|p.G413R|1|0.16|ENSG00000171649|chr19:57591048-57591048|G/A|missense_variant;nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1;ENSG00000269343|ENST00000594901|ZNF587B;ENSG00000204514|ENST00000435989|ZNF814	ZIK1|p.G413R|1|0.16|ENSG00000171649|chr19:57591048-57591048|G/A|missense_variant	ZIK1|p.G413R|1|0.16|ENSG00000171649|chr19:57591048-57591048|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.4917976844	3	376.491798	1126.45356	1.9928	0.00075028	5.5719	0.0020978	7.5647	0.0028481	376.4948030714711	30.149	0.072395	30.149	30.101	30.173	0	1491	31	0.7190863	0.018579185	0.7190863	437.31323	0	11.29895						41	4	2	NaN	NaN	NaN	0.76892	1	13938	13938		1.3696	0	1	2657.8			7399	4802	4249	4343	5898	5898					-0.10460498588031442
GERPYMCDVC	10	Unmodified	_GERPYMCDVC_					0	0	0		ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	ENSG00000197213|ENST00000586855|ZSCAN5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.48928827810005	3	391.489288	1171.44604	1.8645	0.00072994	6.4152	0.0025115	8.2797	0.0032414	391.8261078690745	13.829	0.12005	13.829	13.805	13.925	0	1548	55	0.6837494	0.03350073	0.6837494	415.63025	0	20.364044						142	6	3	NaN	NaN	NaN	0.75966	1	15520	15520		1.6985	0	1	9831.5			7400	5688	4250	4344	5899	5899					-0.13282974179969642
GESSFTYRAY	10	Unmodified	_GESSFTYRAY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.76710277095	2	590.767103	1179.51965	1.7323	0.0010234	0.14278	8.4348E-05	1.8751	0.0011077	590.7664472504731	18.146	0.14398	18.132	18.084	18.228	-0.013948	1200	55	0.89836043	0.03309667	0.896841	364.0318	0	13.411346						148	7	2	NaN	NaN	NaN	0.41241	1	15224	15224		23.086	9.9846	1	23804			7401	3205	4251	4345	5900	5900					-0.06292643150004551
GETGPAKN	8	Unmodified	_GETGPAKN_					0	0	0			REV__ENSG00000135472|ENST00000320634|FAIM2	REV__ENSG00000135472|ENST00000320634|FAIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3788082751	1	773.378808	772.371532	0.99238	0.00076749	7.9232	0.0061276	8.9156	0.0068951	773.3844989299145	33.89	0.0965	33.89	33.866	33.962	0	534	52	1.3016734	0.030516744	1.3016734	265.3376	0	6.2206726						79	5	2	NaN	NaN	NaN	0.8439	1	4388	4388		3.1533	0.36816	1	4901.7	+		7402	9619	4252	4346	5901	5901					-0.023759096131925617
GETGPAKN	8	Unmodified						0	0	0			REV__ENSG00000135472|ENST00000320634|FAIM2	REV__ENSG00000135472|ENST00000320634|FAIM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	773.378808	772.371532	0.99238	0.00076749	7.9232	0.0061276	8.9156	0.0068951	773.3844989299145	33.89	0.0965	33.89	33.866	33.962	0	534	52	1.3016734	0.030516744	1.3016734	265.3376		6.2206726	0.0012319	-0.0005823	-0.00013783	NaN	3.1533	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4901.7	+		7403	9619	4252	4346							-0.023759096131925617
GETGPAKN	8	Unmodified						0	0	0			REV__ENSG00000135472|ENST00000320634|FAIM2	REV__ENSG00000135472|ENST00000320634|FAIM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	773.378808	772.371532	2.069	0.0016002	9.806	0.0075837	11.875	0.0091839	773.3853566704241	33.889	0.024105	33.887	33.863	33.887	-0.0012474	531	37	1.3034686	0.021540165	1.3019491	265.7035		4.390808	-0.0012319	0.00087379	0.00013783	NaN	3.1533	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2417	+		7404	9619	4252	4346							-0.023759096131925617
GETIIWAGT	9	Unmodified	_GETIIWAGT_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.24527490659995	2	474.245275	946.475997	1.6613	0.00078785	-6.273	-0.0029749	-4.6117	-0.0021871	474.24179078263853	14.021	0.21614	14.021	13.949	14.165	0	1356	43	0.8024889	0.025884211	0.8024889	326.10687	0	10.518585						138	10	2	NaN	NaN	NaN	0.39244	1	6992	6992		14.042	1.4537	1	15391	+		7405	9282	4253	4347	5902	5902					0.0006179214351504925
GETPGPGA	8	Unmodified	_GETPGPGA_					0	0	0			REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.1612109262	2	343.161211	684.307869	1.4607	0.00050125	4.1563	0.0014263	5.617	0.0019275	343.1629929515221	36.109	0.21711	36.109	36.036	36.254	0	1512	88	0.7060759	0.053952873	0.7060759	288.4954	0	22.044586						186	10	3	NaN	NaN	NaN	0.8439	1	2924	2924		3.1533	0	1	23120	+		7406	11292	4254	4348	5903	5903					-0.04691270050284402
GETPGPGA	8	Unmodified	_GETPGPGA_					0	0	0			REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.1612109262	2	343.161211	684.307869	1.0939	0.00037538	3.4029	0.0011677	4.4968	0.0015431	343.1630473294088	33.84	0.12064	33.839	33.79	33.911	-0.0018463	1479	55	0.72651637	0.033435285	0.7249969	296.84714	0	13.661316						198	6	4	NaN	NaN	NaN	0.84887	1	2840	2840		0.32989	0	1	28741	+		7407	11292	4254	4348	5904	5904					-0.04691270050284402
GETPGPGA	8	Unmodified						0	0	0			REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	343.161211	684.307869	1.4607	0.00050125	4.1563	0.0014263	5.617	0.0019275	343.1629929515221	36.109	0.21711	36.109	36.036	36.254	0	1512	88	0.7060759	0.053952873	0.7060759	288.4954		22.044586	0.00023629	-0.00034064	0.00075972	NaN	3.1533	186	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23120	+		7408	11292	4254	4348							-0.04691270050284402
GETPGPGA	8	Unmodified						0	0	0			REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	343.161211	684.307869	1.6266	0.0005582	5.3351	0.0018308	6.9617	0.002389	343.1632963118359	36.107	0.19284	36.108	36.06	36.253	0.0011024	1512	73	0.7060759	0.04464823	0.70455647	288.49536		18.242798	-0.00023629	0.00046835	-0.00075972	NaN	3.1533	231	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25228	+		7409	11292	4254	4348							-0.04691270050284402
GETVADVRT	9	Unmodified	_GETVADVRT_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-3|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.2432635339	2	474.243264	946.471974	0.69583	0.00032999	-0.98619	-0.00046769	-0.29036	-0.0001377	474.2425851688488	13.997	0.14392	13.986	13.962	14.106	-0.010672	1356	34	0.8024889	0.020338774	0.8009695	326.10687	0	8.265045						113	7	2	NaN	NaN	NaN	0.27608	1	6862	6862		20.449	1.2851	1	14482			7410	852	4255	4349	5905	5905					-0.0034029735018066276
GETVADVRT	9	Unmodified						0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-3|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.243264	946.471974	1.6613	0.00078785	-2.0318	-0.00096356	-0.37052	-0.00017572	474.24179078263853	14.021	0.21614	14.021	13.949	14.165	0	1356	43	0.8024889	0.025884211	0.8024889	326.10687		10.518585	0.017397	-0.00044644	0.00075972	NaN	20.449	138	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15391			7411	852	4255	4349							-0.0034029735018066276
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.2609249708	2	464.260925	926.507297	1.0521	0.00048847	-2.1511	-0.00099869	-1.099	-0.00051022	464.26003065892013	19.276	0.072037	19.276	19.252	19.324	0	1338	58	0.81357855	0.03511536	0.81357855	330.7153	0	14.27417						110	4	3	NaN	NaN	NaN	0.1507	1	6523	6523		28.495	3.9333	1	9442.2			7412	1163	4256	4350	5906	5906					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.2609249708	2	464.260925	926.507297	0.96431	0.00044769	-0.86346	-0.00040087	0.10085	4.682E-05	464.2604069190136	19.298	0.072105	19.284	19.26	19.332	-0.014141	1341	55	0.8117308	0.033272505	0.81021136	329.9642	0	13.525116						99	4	3	NaN	NaN	NaN	0.29341	1	6395	6395		19.336	7.2877	1	8139.6			7413	1163	4256	4350	5907	5907					0.04110365177609765
GEYNEEYFESF	11	Unmodified	_GEYNEEYFESF_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.8542236535332	3	471.854224	1412.54084	0.375	0.00017695	-1.5063	-0.00071076	-1.1313	-0.00053381	471.8536392445452	38.345	0.24038	38.349	38.253	38.493	0.0040245	1386	88	0.78399014	0.053684235	0.7824707	475.6172	0	32.568176						474	11	3	NaN	NaN	NaN	0.67644	1	19208	19208		9.0037	3.5538	1	48436	+		7414	10228	4257	4351	5908	5908					-0.14892722631839206
GEYNEEYFESF	11	Unmodified	_GEYNEEYFESF_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.2776972469999	2	707.277697	1412.54084	1.1824	0.0008363	-2.2308	-0.0015778	-1.0484	-0.00074152	707.2763904440933	38.345	0.28846	38.349	38.229	38.517	0.0040245	1122	64	0.9460945	0.038490057	0.9445751	382.6425	0	15.567078						376	13	4	NaN	NaN	NaN	0.45017	1	19209	19209		32.778	15.92	1	50291	+		7415	10228	4257	4351	5909	5909					-0.14892722631839206
GFAAGKVG	8	Unmodified	_GFAAGKVG_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3882507494001	1	706.388251	705.380974	1.4564	0.0010288	4.6676	0.0032971	6.1239	0.0043259	706.3916948614805	30.8	0.072392	30.794	30.77	30.842	-0.0057545	651	34	1.2315145	0.019828677	1.229995	251.45192	0	4.0486298						50	4	2	NaN	NaN	NaN	0.84692	1	3262	3262		1.4396	0	1	3552.2	+	+	7416	8283	4258	4352	5910	5910					0.016499034629987364
GFAAGKVG	8	Unmodified						0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	706.388251	705.380974	0.76757	0.0005422	8.2187	0.0058056	8.9863	0.0063478	706.3951283801372	30.801	0.072407	30.801	30.777	30.849	0	651	34	1.2315145	0.019828677	1.2315145	251.4519		4.0486298	0.0034256	0.0016071	0.00075972	NaN	1.4396	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3581.7	+	+	7417	8283	4258	4352							0.016499034629987364
GFAAGKVG	8	Unmodified						0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	706.388251	705.380974	1.4564	0.0010288	4.6676	0.0032971	6.1239	0.0043259	706.3916948614805	30.8	0.072392	30.794	30.77	30.842	-0.0057545	651	34	1.2315145	0.019828677	1.229995	251.45192		4.0486298	-0.0034256	-0.00090135	-0.00075972	NaN	1.4396	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3552.2	+	+	7418	8283	4258	4352							0.016499034629987364
GFAGDGFF	8	Unmodified	_GFAGDGFF_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.3515308921002	1	817.351531	816.344254	1.0796	0.0008824	3.3986	0.0027779	4.4782	0.0036603	817.3541143183844	32.272	0.24132	32.268	32.172	32.413	-0.0037613	1272	175	0.854179	0.10702622	0.8526596	173.955	0	21.796066						552	11	2	NaN	NaN	NaN	0.84887	1	4860	4860		0.32989	0	1	57642			7419	3373	4259	4353	5911	5911					-0.07126393153555455
GFAGDGFF	8	Unmodified						0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	817.351531	816.344254	1.7443	0.0014257	3.4388	0.0028107	5.1831	0.0042364	817.3541573556284	32.297	0.24131	32.297	32.201	32.442	0	1272	157	0.854179	0.095933795	0.854179	173.955		19.537064	0.014485	1.5885E-05	0.00075972	NaN	0.32989	480	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48629			7420	3373	4259	4353							-0.07126393153555455
GFASAAGK	8	Unmodified	_GFASAAGK_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073001	1	708.367515	707.360239	0.77824	0.00055128	7.7997	0.0055251	8.578	0.0060763	708.3733506195997	31.283	0.096529	31.277	31.253	31.35	-0.0050716	732	70	1.1827712	0.04156649	1.1812518	241.48659	0	8.486649						121	5	2	NaN	NaN	NaN	0.84897	1	3299	3299		0.27539	0	1	8841.8	+		7421	8442	4260	4354	5912	5912					-0.005146869166651413
GFAVVRPP	8	Unmodified	_GFAVVRPP_					0	0	0		nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000048052|Q9UKV0-2|HDAC9;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000048052|Q9UKV0-4|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-9|HDAC7;ENSG00000068024|ENST00000543185|HDAC4;ENST00000490851.5_1_7:18832955-19035682:+|nuORF;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000490851.5_1_7:18832955-19035682:+|nuORF	nc|ENSG00000061273|Q8WUI4-8|HDAC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.4882991450002	1	842.488299	841.481023	0.90755	0.0007646	6.6535	0.0056055	7.561	0.0063701	842.4934009199599	31.332	0.048252	31.332	31.308	31.356	0	459	40	1.3464937	0.023276687	1.3464937	274.0801	0	4.7380066						49	3	2	NaN	NaN	NaN	0.84651	1	5284	5284		1.6704	0.2308	1	3777.8			7422	7903;556	4261	4355	5913	5913					0.05394140796806823
GFCGVAGG	8	Unmodified	_GFCGVAGG_					0	0	0			REV__nc|ENSG00000214851|Q8N6U2|LINC00612	REV__nc|ENSG00000214851|Q8N6U2|LINC00612	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.2868221453001	1	667.286822	666.279546	1.4397	0.0009607	5.8831	0.0039257	7.3228	0.0048864	667.2909917277491	26.77	0.04875	26.77	26.746	26.795	0	720	58	1.1900014	0.03433752	1.1900014	243.24712	0	7.0188904						75	3	2	NaN	NaN	NaN	0.83849	1	2473	2473		4.0537	2.3833	1	8035.7	+		7423	13231	4262	4356	5914	5914					-0.06694291231212901
GFCGVAGG	8	Unmodified						0	0	0			REV__nc|ENSG00000214851|Q8N6U2|LINC00612	REV__nc|ENSG00000214851|Q8N6U2|LINC00612	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.286822	666.279546	1.4397	0.0009607	5.8831	0.0039257	7.3228	0.0048864	667.2909917277491	26.77	0.04875	26.77	26.746	26.795	0	720	58	1.1900014	0.03433752	1.1900014	243.24712		7.0188904	-0.0065409	0.00027212	-0.0010472	NaN	4.0537	75	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8035.7	+		7424	13231	4262	4356							-0.06694291231212901
GFCLGGGG	8	Unmodified	_GFCLGGGG_					0	0	0		ENST00000374274.7_2_X:70279588-70279684:-|nuORF	ENST00000374274.7_2_X:70279588-70279684:-|nuORF	ENST00000374274.7_2_X:70279588-70279684:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.2868221453001	1	667.286822	666.279546	1.368	0.00091282	5.1565	0.0034408	6.5244	0.0043537	667.2903551223696	26.794	0.2172	26.783	26.711	26.928	-0.010645	714	70	1.1936152	0.04156208	1.1920958	243.98582	0	8.495651						170	10	2	NaN	NaN	NaN	0.84651	1	2387	2387		1.6704	1.2747	1	12589			7425	6687	4263	4357	5915	5915					-0.06694291231212901
GFDYRPYIVSW	11	Unmodified	_GFDYRPYIVSW_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.2311886582	3	468.231189	1401.67174	1.468	0.00068737	3.1287	0.001465	4.5967	0.0021523	468.232709563994	17.261	0.31179	17.261	17.165	17.477	0	1404	52	0.77288127	0.031480253	0.77288127	468.91302	0	19.099335						294	14	3	NaN	NaN	NaN	0.62984	1	20074	20074		12.063	0.59555	1	40694			7426	5267	4264	4358	5916	5916					-0.013032424024459033
GFGEELQIFHF	11	Unmodified	_GFGEELQIFHF_					0	0	0		ENST00000527884.5_1_11:19261698-19263156:-|nuORF	ENST00000527884.5_1_11:19261698-19263156:-|nuORF	ENST00000527884.5_1_11:19261698-19263156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.88378893629994	3	441.883789	1322.62954	1.9721	0.00087144	-10.902	-0.0048176	-8.9303	-0.0039461	442.2136633940451	20.213	0.072203	20.198	20.174	20.246	-0.014141	1494	28	0.7172283	0.01672399	0.71570885	435.40158	0	10.152496						45	4	2	NaN	NaN	NaN	0.76733	1	18287	18287		2.4611	0.12301	1	3082.9			7427	7436	4265	4359	5917	5917					-0.01887217810826769
GFGGAALL	8	Unmodified	_GFGGAALL_					0	0	0		ENST00000366663.9_1_1:230972959-230973187:-|nuORF	ENST00000366663.9_1_1:230972959-230973187:-|nuORF	ENST00000366663.9_1_1:230972959-230973187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3930017763001	1	705.393002	704.385725	0.96063	0.00067762	-10.605	-0.007481	-9.6448	-0.0068034	705.3860068842043	24.671	0.048227	24.671	24.647	24.695	0	627	52	1.24593	0.03062141	1.24593	254.40219	0	6.2524567						110	3	3	NaN	NaN	NaN	0.81214	1	3298	3298		7.5902	3.5366	1	12352			7428	6616	4266	4360	5918	5918					0.021707876057689646
GFGGAALL	8	Unmodified						0	0	0		ENST00000366663.9_1_1:230972959-230973187:-|nuORF	ENST00000366663.9_1_1:230972959-230973187:-|nuORF	ENST00000366663.9_1_1:230972959-230973187:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	705.393002	704.385725	0.99421	0.00070131	-10.648	-0.0075112	-9.6541	-0.0068099	705.3846121516984	24.695	0.072319	24.682	24.634	24.707	-0.012392	624	46	1.247731	0.027015924	1.2462115	254.76994		5.516281	0.0057888	-1.1741E-05	0.00014081	NaN	7.5902	83	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10153			7429	6616	4266	4360							0.021707876057689646
GFGGKGGC	8	Unmodified	_GFGGKGGC_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	341.6524988246	2	341.652499	681.290445	0.92348	0.00031551	8.4041	0.0028713	9.3276	0.0031868	341.65625054305144	38.372	0.096077	38.372	38.348	38.444	0	1536	31	0.69119483	0.018609524	0.69119483	282.43954	0	7.604309						56	5	2	NaN	NaN	NaN	0.84945	1	2864	2864		0	0	1	3486.5	+		7430	9878	4267	4361	5919	5919					-0.06294888856928083
GFGGKGGC	8	Unmodified	_GFGGKGGC_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.6524988246	2	341.652499	681.290445	1.3691	0.00046777	5.2911	0.0018077	6.6603	0.0022755	341.65497194806255	32.875	0.24117	32.872	32.8	33.041	-0.0031052	1515	70	0.7042165	0.04275769	0.70269704	287.76053	0	17.471863						277	11	3	NaN	NaN	NaN	0.84945	1	2775	2775		0	0	1	36472	+		7431	9878	4267	4361	5920	5920					-0.06294888856928083
GFGGKGGC	8	Unmodified	_GFGGKGGC_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.6524988246	2	341.652499	681.290445	1.0285	0.00035139	6.0964	0.0020828	7.1249	0.0024342	341.65545150994825	33.406	0.19305	33.404	33.356	33.549	-0.0018501	1527	70	0.69677675	0.042776287	0.6952573	284.72046	0	17.479431						367	9	4	NaN	NaN	NaN	0.84945	1	2776	2776		0	0	1	54096	+		7432	9878	4267	4361	5921	5921					-0.06294888856928083
GFGGKGGC	8	Unmodified	_GFGGKGGC_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.6524988246	2	341.652499	681.290445	2.4296	0.00083007	6.6035	0.0022561	9.0331	0.0030862	341.65578824568115	35.456	0.072304	35.457	35.409	35.481	0.00053024	1551	28	0.6818875	0.016760409	0.6803681	278.63635	0	6.848694						34	4	2	NaN	NaN	NaN	0.84945	1	2777	2777		0	0	1	1808.1	+		7433	9878	4267	4361	5922	5922					-0.06294888856928083
GFGGKGGC	8	Unmodified						0	0	0			REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	REV__nc|ENSG00000143751|Q6IQ49-2|SDE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	341.652499	681.290445	0.92348	0.00031551	8.4041	0.0028713	9.3276	0.0031868	341.65625054305144	38.372	0.096077	38.372	38.348	38.444	0	1536	31	0.69119483	0.018609524	0.69119483	282.43954		7.604309	0	0	0	NaN	0	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3486.5	+		7434	9878	4267	4361							-0.06294888856928083
GFGIGNKG	8	Unmodified	_GFGIGNKG_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3940644088001	1	749.394064	748.386788	1.1141	0.00083489	8.0646	0.0060436	9.1787	0.0068784	749.397629812219	33.551	0.096565	33.549	33.525	33.621	-0.0018463	582	40	1.2729256	0.02337873	1.2714062	259.62265	0	4.76828						89	5	2	NaN	NaN	NaN	0.84207	1	3950	3950		3.5732	0.78803	1	5503.9	+		7435	10545	4268	4362	5923	5923					0.002530019746700418
GFGIGNKG	8	Unmodified						0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.394064	748.386788	0.8066	0.00060446	8.3919	0.0062889	9.1985	0.0068933	749.3993453191615	33.552	0.14468	33.552	33.528	33.673	0	588	58	1.2693287	0.034169078	1.2693287	258.88904		6.9690247	0.0015914	0.00011173	-0.0010387	NaN	3.5732	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6533.6	+		7436	10545	4268	4362							0.002530019746700418
GFGIGNKG	8	Unmodified						0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	749.394064	748.386788	1.1141	0.00083489	8.0646	0.0060436	9.1787	0.0068784	749.397629812219	33.551	0.096565	33.549	33.525	33.621	-0.0018463	582	40	1.2729256	0.02337873	1.2714062	259.62265		4.76828	-0.0015914	-0.00013358	0.0010387	NaN	3.5732	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5503.9	+		7437	10545	4268	4362							0.002530019746700418
GFGLGFFV	8	Unmodified	_GFGLGFFV_					0	0	0			REV__SLC16A7|p.L342I|1|0.06|ENSG00000118596|chr12:59775319-59775319|T/A|missense_variant	REV__SLC16A7|p.L342I|1|0.06|ENSG00000118596|chr12:59775319-59775319|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4399519689001	1	843.439952	842.432676	0.90702	0.00076502	0.2564	0.00021626	1.1634	0.00098128	843.441236534721	33.431	0.12067	33.431	33.383	33.504	0	441	64	1.3572328	0.037568927	1.3572328	276.26108	0	7.6470337						101	6	2	NaN	NaN	NaN	0.83849	1	5299	5299		4.0537	0.90034	1	6666	+		7438	9271	4269	4363	5924	5924					0.005156471569080168
GFGRAGKG	8	Unmodified	_GFGRAGKG_					0	0	0			REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4052977971002	1	749.405298	748.398021	1.6214	0.0012151	1.4843	0.0011123	3.1057	0.0023274	749.4055186948859	55.749	0.048115	55.749	55.749	55.797	0	597	58	1.2639319	0.03418362	1.2639319	257.78827	0	6.972						78	3	2	NaN	NaN	NaN	0.84887	1	4028	4028		0.32989	0	1	8676.5	+		7439	10712	4270	4364	5925	5925					0.013758240688162005
GFGRAGKG	8	Unmodified	_GFGRAGKG_					0	0	0			REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.4052977971002	1	749.405298	748.398021	1.2587	0.0009433	2.2145	0.0016596	3.4732	0.0026029	749.4067930248495	30.39	0.19304	30.383	30.359	30.552	-0.0064106	528	142	1.3052634	0.08440626	1.303744	266.21814	0	17.215271						433	9	4	NaN	NaN	NaN	0.80071	1	3952	3952		9.1232	2.3292	1	60911	+		7440	10712	4270	4364	5926	5926					0.013758240688162005
GFGTLGNK	8	Unmodified	_GFGTLGNK_					0	0	0		ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	793.4202791593001	1	793.420279	792.413003	1.1701	0.00092841	5.0935	0.0040413	6.2637	0.0049697	793.423630661701	30.97	0.1207	30.97	30.946	31.066	0	534	67	1.3016734	0.039490342	1.3016734	265.22043	0	8.046265						154	6	2	NaN	NaN	NaN	0.69631	1	4654	4654		19.285	5.5477	1	14059			7441	5024	4271	4365	5927	5927					0.00849271146148567
GFILKGGN	8	Unmodified	_GFILKGGN_					0	0	0			REV__CON__Q9DCV7	REV__CON__Q9DCV7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4566646656001	1	805.456665	804.449388	1.6046	0.0012925	4.6707	0.003762	6.2753	0.0050545	805.4608892139133	36.589	0.24063	36.591	36.543	36.783	0.0016747	486	64	1.3303722	0.037632942	1.3288528	270.99884	0	7.6658936						281	11	3	NaN	NaN	NaN	0.59262	1	4710	4710		25.752	4.7993	1	40062	+	+	7442	8289	4272	4366	5928	5928					0.039341480428561226
GFILKGGN	8	Unmodified						0	0	0			REV__CON__Q9DCV7	REV__CON__Q9DCV7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	805.456665	804.449388	1.6046	0.0012925	4.6707	0.003762	6.2753	0.0050545	805.4608892139133	36.589	0.24063	36.591	36.543	36.783	0.0016747	486	64	1.3303722	0.037632942	1.3288528	270.99884		7.6658936	-0.0001529	-0.00023474	-0.00075972	NaN	25.752	281	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40062	+	+	7443	8289	4272	4366							0.039341480428561226
GFIMPIEVHF	10	Unmodified	_GFIMPIEVHF_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1;MLLT1|p.K352Rfs*86|1|0.14|ENSG00000130382|chr19:6222176-6222176|T/-|frameshift_variant	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.30735223465	2	595.307352	1188.60015	0.64005	0.00038103	-0.54782	-0.00032612	0.09223	5.4905E-05	595.3070234300475	31.742	0.048271	31.742	31.718	31.766	0	1200	64	0.89836043	0.038610697	0.89836043	363.99963	0	15.644379						100	3	2	NaN	NaN	NaN	0.61246	1	16120	16120		14.042	6.454	1	13057			7444	2640	4273	4367	5929	5929					0.01339546639337641
GFIMPIEVHF	10	Unmodified						0	0	0		ENSG00000130382|ENST00000252674|MLLT1;MLLT1|p.K352Rfs*86|1|0.14|ENSG00000130382|chr19:6222176-6222176|T/-|frameshift_variant	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.307352	1188.60015	0.22402	0.00013336	-1.3902	-0.00082759	-1.1662	-0.00069423	595.3067066026892	31.741	0.096586	31.737	31.712	31.809	-0.0044155	1197	73	0.9001988	0.044105053	0.8986794	364.74454		17.870605	-0.0027523	-0.00049829	0.00015948	NaN	14.042	176	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15530			7445	2640	4273	4367							0.01339546639337641
GFINQDFV	8	Unmodified	_GFINQDFV_					0	0	0		ENSG00000182107|ENST00000555868|TMEM30B;ENST00000557163.1_1_14:61746812-61748042:-|nuORF	ENSG00000182107|ENST00000555868|TMEM30B	ENSG00000182107|ENST00000555868|TMEM30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4570585961001	1	939.457059	938.449782	1.4978	0.0014071	2.4212	0.0022746	3.919	0.0036817	939.4597274190812	29.811	0.16888	29.803	29.755	29.924	-0.0070648	315	103	1.4322147	0.060557723	1.4306953	291.04416	0	12.306091						305	8	3	NaN	NaN	NaN	0.54545	1	6643	6643		28.667	8.1111	1	32415			7446	5249	4274	4368	5930	5930					-0.021904770279547847
GFIPLVIYL	9	Unmodified	_GFIPLVIYL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7;ENST00000496129.1_1_7:22857608-22862419:-|nuORF;ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.8178787437	2	517.817879	1033.6212	1.4511	0.0007514	-4.0278	-0.0020857	-2.5767	-0.0013343	517.8154589964895	40.631	0.12006	40.637	40.565	40.685	0.0067558	1260	40	0.8615505	0.023950994	0.8600311	349.68488	0	9.721191						74	6	2	NaN	NaN	NaN	0.48931	1	9740	9740		10.052	3.8014	1	4072.5			7447	5653	4275	4369	5931	5931					0.10573880010497305
GFLEEQDPMP	10	Unmodified	_GFLEEQDPMP_					0	0	0			REV__nc|ENSG00000117595|O14896-2|IRF6	REV__nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1162.5085018190998	1	1162.5085	1161.50123	1.5702	0.0018254	-3.3415	-0.0038845	-1.7713	-0.0020591	1162.5044766155197	33.237	0.19305	33.235	33.162	33.355	-0.0024757	117	100	1.5493695	0.05834472	1.54785	313.97568	0	11.823395						431	9	3	NaN	NaN	NaN	0.20271	1	14675	14675		35.296	1.7292	1	43013	+		7448	9249	4276	4370	5932	5932					-0.0730652111622021
GFLFGSIE	8	Unmodified	_GFLFGSIE_					0	0	0			REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	869.4403458994002	1	869.440346	868.433069	1.6904	0.0014697	-1.4791	-0.001286	0.21126	0.00018368	869.4390499431878	25.009	0.072392	25.009	25.009	25.081	0	1206	70	0.894683	0.042301655	0.894683	182.02277	0	8.606232						108	4	2	NaN	NaN	NaN	0.84876	1	5641	5641		0.39566	0	1	7019.5	+		7449	13458	4277	4371	5933	5933					-0.006409779138948579
GFLFGSIE	8	Unmodified						0	0	0			REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	869.440346	868.433069	1.6904	0.0014697	-1.4791	-0.001286	0.21126	0.00018368	869.4390499431878	25.009	0.072392	25.009	25.009	25.081	0	1206	70	0.894683	0.042301655	0.894683	182.02277		8.606232	-0.0059464	-0.0019764	0.0025988	NaN	0.39566	108	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7019.5	+		7450	13458	4277	4371							-0.006409779138948579
GFLFGSIE	8	Unmodified						0	0	0			REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	869.440346	868.433069	1.5602	0.0013565	2.4696	0.0021472	4.0298	0.0035036	869.4423150328225	25.033	0.1206	25.021	24.996	25.117	-0.012011	1212	64	0.8910048	0.03861493	0.88948536	181.27443		7.8561707	0.0059464	0.0014568	-0.0025988	NaN	0.39566	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6561.3	+		7451	13458	4277	4371							-0.006409779138948579
GFLKAGTA	8	Unmodified	_GFLKAGTA_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.4301155641001	1	764.430116	763.422839	0.86899	0.00066428	5.4547	0.0041697	6.3236	0.004834	764.4336220634847	31.717	0.14486	31.712	31.688	31.833	-0.0044155	549	49	1.292695	0.028738618	1.2911756	263.5613	0	5.859375						135	7	3	NaN	NaN	NaN	0.83211	1	4191	4191		4.9097	0	1	10529			7452	2130	4278	4372	5934	5934					0.031664591515209395
GFLPTHRL	8	Unmodified	_GFLPTHRL_					0	0	0		ENST00000595529.1_1_19:41112383-41114583:+|nuORF;ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4	ENST00000595529.1_1_19:41112383-41114583:+|nuORF	ENST00000595529.1_1_19:41112383-41114583:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.77179421834995	2	470.771794	939.529036	1.3421	0.00063183	2.1341	0.0010047	3.4763	0.0016365	470.7723815063969	55.124	0.02412	55.124	55.1	55.124	0	1347	34	0.8080346	0.020332098	0.8080346	328.3952	0	8.263245						60	2	3	NaN	NaN	NaN	0.8439	1	6819	6819		3.1533	1.4511	1	6687.6			7453	1048	4279	4373	5935	5935					0.056852147168342526
GFQSSGLR	8	Unmodified	_GFQSSGLR_					0	0	0			REV__ENSG00000214376|ENST00000409977|VSTM5	REV__ENSG00000214376|ENST00000409977|VSTM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.4369918560001	1	851.436992	850.429715	-0.60198	-0.00051255	5.82	0.0049554	5.2181	0.0044429	851.4426878560051	53.778	0.23327	53.777	53.712	53.945	-0.00059128	375	49	1.3965509	0.028558373	1.3950315	284.22122	0	5.8121033						155	10	2	NaN	NaN	NaN	0.84455	1	5259	5259		2.7852	1.1148	1	13098	+		7454	11287	4280	4374	5936	5936					-0.001482279679066778
GFSAGASS	8	Unmodified	_GFSAGASS_					0	0	0			REV__ENSG00000170454|ENST00000252245|KRT75	REV__ENSG00000170454|ENST00000252245|KRT75	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1533858941	2	342.153386	682.292219	1.2211	0.00041781	3.7924	0.0012976	5.0135	0.0017154	342.15489497959993	31.307	0.16892	31.302	31.229	31.398	-0.0050716	1539	58	0.68933374	0.03535223	0.6878143	281.67096	0	14.445404						164	8	3	NaN	NaN	NaN	0.84727	1	2791	2791		1.2418	0	1	18709	+	+	7455	8256	4281	4375	5937	5937					-0.06163556567332762
GFSAGASS	8	Unmodified						0	0	0			REV__ENSG00000170454|ENST00000252245|KRT75	REV__ENSG00000170454|ENST00000252245|KRT75	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	342.153386	682.292219	1.0219	0.00034966	4.3752	0.001497	5.3972	0.0018467	342.1548991750581	31.018	0.16892	31.018	30.994	31.163	0	1509	88	0.70793515	0.053958714	0.70793515	289.27176		22.048248	-0.14175	0.00022451	0.01006	NaN	1.2418	168	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17390	+	+	7456	8256	4281	4375							-0.06163556567332762
GFSAGASS	8	Unmodified						0	0	0			REV__ENSG00000170454|ENST00000252245|KRT75	REV__ENSG00000170454|ENST00000252245|KRT75	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.153386	682.292219	1.2211	0.00041781	3.7924	0.0012976	5.0135	0.0017154	342.15489497959993	31.307	0.16892	31.302	31.229	31.398	-0.0050716	1539	58	0.68933374	0.03535223	0.6878143	281.67096		14.445404	0.14175	-0.00017432	-0.01006	NaN	1.2418	164	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18709	+	+	7457	8256	4281	4375							-0.06163556567332762
GFSSPLIL	8	Unmodified	_GFSSPLIL_					0	0	0		ENST00000598490.1_1_19:42806306-42813777:+|nuORF	ENST00000598490.1_1_19:42806306-42813777:+|nuORF	ENST00000598490.1_1_19:42806306-42813777:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4767314057002	1	833.476731	832.469455	1.9873	0.0016564	3.4293	0.0028582	5.4166	0.0045146	833.480780185671	29.836	0.048279	29.836	29.811	29.86	0	429	37	1.3643885	0.021459937	1.3643885	277.77094	0	4.368927						49	3	2	NaN	NaN	NaN	0.80692	1	5171	5171		8.2903	2.2	1	3794.6			7458	7761	4282	4376	5938	5938					0.046518989828200574
GFSVCLSTTAF	11	Unmodified	_GFSVCLSTTAF_					0	0	0			REV__ENST00000492085.1_1_1:204956601-204966704:+|nuORF	REV__ENST00000492085.1_1_1:204956601-204966704:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.77079955285	2	566.7708	1131.52705	2.2628	0.0012825	3.7523	0.0021267	6.0152	0.0034092	566.7722857545325	44.134	0.047935	44.146	44.098	44.146	0.011429	1239	22	0.87444305	0.012886941	0.8729236	354.5137	0	5.2245483						25	3	2	NaN	NaN	NaN	0.57804	1	13679	13679		15.463	3.414	1	1116.1	+		7459	12470	4283	4377	5939	5939					-0.0334562687394282
GFSWFWFR	8	Unmodified	_GFSWFWFR_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.77179421835	2	566.771794	1131.52904	2.0671	0.0011716	3.997	0.0022654	6.0641	0.003437	567.2757311992821	23.151	0.36195	23.138	23.114	23.476	-0.013294	1224	103	0.883646	0.062570035	0.88212657	358.24475	0	25.366913						580	16	3	NaN	NaN	NaN	0.54545	1	13685	13685		28.667	0	1	318970			7460	6017	4284	4378	5940	5940					-0.0314678528316108
GFTRCLRWF	9	Unmodified	_GFTRCLRWF_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.3029355587499	2	593.302936	1184.59132	1.1784	0.00069917	2.1824	0.0012948	3.3608	0.001994	593.3045912050165	29.28	0.16889	29.28	29.256	29.425	0	1173	76	0.91489893	0.04592049	0.91489893	370.71512	0	18.606873						278	8	3	NaN	NaN	NaN	0.53317	1	15998	15998		8.2448	1.2605	1	42517	+		7461	9590	4285	4379	5941	5941					0.006406177935105006
GFTYGAGR	8	Unmodified	_GFTYGAGR_					0	0	0			REV__ENST00000523804.1_1_8:30651411-30651755:-|nuORF	REV__ENST00000523804.1_1_8:30651411-30651755:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.3998780682001	1	828.399878	827.392602	1.6211	0.0013429	-5.0048	-0.004146	-3.3837	-0.002803	828.3951354730053	26.819	0.14529	26.819	26.746	26.891	0	468	55	1.3411216	0.032241344	1.3411216	273.06137	0	6.5645447						172	7	3	NaN	NaN	NaN	0.74229	1	5108	5108		16.417	2.6796	1	13821	+		7462	8936	4286	4380	5942	5942					-0.027998995136613303
GFVCFSSP	8	Unmodified	_GFVCFSSP_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000471997.1_1_2:147345807-147346347:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3	nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.3705517747001	1	843.370552	842.363275	0.8623	0.00072724	-2.382	-0.0020089	-1.5197	-0.0012816	843.3688423512743	28.773	0.12065	28.765	28.668	28.789	-0.0083504	498	103	1.3232021	0.060913444	1.3216827	269.3346	0	12.398773						153	6	2	NaN	NaN	NaN	0.75682	1	5160	5160		15.013	0	1	12552			7463	1298;1062	4287	4381	5943	5943					-0.06421179854169168
GFVFGTKK	8	Unmodified	_GFVFGTKK_					0	0	0			REV__ENST00000543123.1_1_11:63449027-63517671:+|nuORF	REV__ENST00000543123.1_1_11:63449027-63517671:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.5036148582002	1	883.503615	882.496338	0.72532	0.00064082	1.0459	0.00092406	1.7712	0.0015649	883.50481630099	53.753	0.088955	53.753	53.712	53.801	-0.00059128	258	37	1.4660252	0.021330237	1.4645058	298.18793	0	4.338562						47	4	2	NaN	NaN	NaN	0.84876	1	5715	5715		0.39566	0	1	2455	+		7464	9565	4288	4382	5944	5944					0.050390075940072165
GFVGGGVV	8	Unmodified	_GFVGGGVV_					0	0	0		ENST00000518462.1_1_7:150066645-150068442:+|nuORF	ENST00000518462.1_1_7:150066645-150068442:+|nuORF	ENST00000518462.1_1_7:150066645-150068442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	346.19231408934996	2	346.192314	690.370075	1.3978	0.00048392	-4.8685	-0.0016855	-3.4707	-0.0012015	346.1905381361714	27.735	0.19309	27.726	27.677	27.87	-0.009552	1458	40	0.7395112	0.024125457	0.73799175	302.10486	0	9.855713						158	9	3	NaN	NaN	NaN	0.84876	1	2976	2976		0.39566	0	1	15824			7465	7382	4289	4383	5945	5945					0.012505010887025492
GFYPAEITLTW	11	Unmodified	_GFYPAEITLTW_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.32679619805	2	649.326796	1296.63904	1.4405	0.00093533	-2.6351	-0.0017111	-1.1947	-0.00077574	649.3246046394877	34.806	0.19292	34.806	34.782	34.975	0	1113	88	0.9515937	0.053175867	0.9515937	385.19995	0	21.5253						505	9	4	NaN	NaN	NaN	7.9405E-05	1	18712	18712		87.778	29.543	1	91486			7466	5898;5943;6047;5902;5890	4290	4384	5946	5946					0.0025855047470031423
GFYPAEITLTW	11	Unmodified	_GFYPAEITLTW_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.32679619805	2	649.326796	1296.63904	1.3369	0.0008681	-2.021	-0.0013123	-0.68408	-0.00044419	649.3250809645497	34.805	0.14464	34.804	34.78	34.925	-0.0006485	1110	91	0.95342636	0.055006564	0.9519069	385.9418	0	22.266357						504	7	4	NaN	NaN	NaN	2.5795E-11	1	17877	17877		108.53	61.05	1	90824			7467	5898;5943;6047;5902;5890	4290	4384	5947	5947					0.0025855047470031423
GGAAAGHR	8	Unmodified	_GGAAAGHR_					0	0	0		ENST00000487187.1_1_7:1476413-1478653:-|nuORF	ENST00000487187.1_1_7:1476413-1478653:-|nuORF	ENST00000487187.1_1_7:1476413-1478653:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3535965776	1	696.353597	695.34632	0.8644	0.00060193	-4.3595	-0.0030357	-3.4951	-0.0024338	696.3503694757932	37.121	0.21706	37.121	37.048	37.265	0	750	49	1.1719203	0.028945327	1.1719203	239.3497	0	5.9116974						196	10	3	NaN	NaN	NaN	0.84692	1	3148	3148		1.4396	0	1	17544			7468	7243	4291	4385	5948	5948					-0.013539196251031171
GGAAAPMP	8	Unmodified	_GGAAAPMP_					0	0	0		ENST00000600178.5_1_19:39307593-39308076:-|nuORF	ENST00000600178.5_1_19:39307593-39308076:-|nuORF	ENST00000600178.5_1_19:39307593-39308076:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3181222737	1	671.318122	670.310846	1.2141	0.00081502	6.4779	0.0043488	7.692	0.0051638	671.3217802861145	36.326	0.19283	36.326	36.205	36.398	0	765	52	1.1628724	0.030772448	1.1628724	237.67296	0	6.2894135						154	9	2	NaN	NaN	NaN	0.84651	1	2601	2601		1.6704	1.2747	1	10422			7469	7767	4292	4386	5949	5949					-0.037497181971275495
GGAAAPSH	8	Unmodified	_GGAAAPSH_					0	0	0			REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3158140878	1	667.315814	666.308538	1.2388	0.00082664	-5.1872	-0.0034615	-3.9484	-0.0026348	667.3119669714436	20.742	0.26504	20.728	20.632	20.897	-0.014088	753	100	1.1701111	0.059747696	1.1685916	239.1812	0	12.212952						471	12	2	NaN	NaN	NaN	0.84692	1	2393	2393		1.4396	0	1	43608	+		7470	11547	4293	4387	5950	5950					-0.03796430610577772
GGAAAPSH	8	Unmodified						0	0	0			REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.315814	666.308538	1.4451	0.00096436	-5.7286	-0.0038228	-4.2834	-0.0028584	667.3120016528046	20.742	0.26517	20.742	20.646	20.911	0	753	112	1.1701111	0.06698251	1.1701111	239.1812		13.691849	0.0068816	-0.00020667	0.00075972	NaN	1.4396	535	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49490	+		7471	11547	4293	4387							-0.03796430610577772
GGAAAPSH	8	Unmodified						0	0	0			REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	REV__ENST00000261867.4_1_15:45814615-45814984:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.315814	666.308538	1.2388	0.00082664	-5.1872	-0.0034615	-3.9484	-0.0026348	667.3119669714436	20.742	0.26504	20.728	20.632	20.897	-0.014088	753	100	1.1701111	0.059747696	1.1685916	239.1812		12.212952	-0.0068816	0.0001546	-0.00075972	NaN	1.4396	471	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43608	+		7472	11547	4293	4387							-0.03796430610577772
GGAARPIK	8	Unmodified	_GGAARPIK_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.4678980539002	1	769.467898	768.460622	-0.19716	-0.00015171	7.0107	0.0053945	6.8135	0.0052428	769.4714301182476	58.051	0.048004	58.05	58.026	58.074	-0.00048065	495	70	1.3249949	0.04122579	1.3234755	270.1155	0	8.404388						131	3	3	NaN	NaN	NaN	0.84887	1	4266	4266		0.32989	0	1	15221			7473	1502	4294	4388	5951	5951					0.0671297013699359
GGAASPSTS	9	Unmodified	_GGAASPSTS_					0	0	0			REV__ENSG00000048405|ENST00000265827|ZNF800	REV__ENSG00000048405|ENST00000265827|ZNF800	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	734.3315237315002	1	734.331524	733.324247	1.6516	0.0012128	6.3135	0.0046362	7.9651	0.005849	734.3362843933236	25.226	0.36194	25.226	25.105	25.467	0	639	70	1.2387238	0.041437745	1.2387238	252.74028	0	8.454666						270	16	2	NaN	NaN	NaN	0.62619	1	3802	3802		4.4131	0	1	32692	+		7474	8481	4295	4389	5952	5952					-0.05308188884168885
GGAASPSTS	9	Unmodified						0	0	0			REV__ENSG00000048405|ENST00000265827|ZNF800	REV__ENSG00000048405|ENST00000265827|ZNF800	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	734.331524	733.324247	1.6516	0.0012128	6.3135	0.0046362	7.9651	0.005849	734.3362843933236	25.226	0.36194	25.226	25.105	25.467	0	639	70	1.2387238	0.041437745	1.2387238	252.74028		8.454666	-0.0059485	0.00052525	0.00075972	NaN	4.4131	270	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32692	+		7475	8481	4295	4389							-0.05308188884168885
GGAAVCVV	8	Unmodified	_GGAAVCVV_					0	0	0			REV__nc|ENSG00000138162|O95359-3|TACC2	REV__nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021001	1	675.349422	674.342146	0.7238	0.00048882	4.0033	0.0027036	4.727	0.0031924	675.3521620425673	20.718	0.31321	20.704	20.487	20.801	-0.014086	753	124	1.1701111	0.07415247	1.1685916	239.12384	0	15.153778						523	14	2	NaN	NaN	NaN	0.81214	1	2622	2622		7.5902	2.6805	1	38117	+		7476	9719	4296	4390	5953	5953					-0.008051451630194606
GGAAVPGA	8	Unmodified	_GGAAVPGA_					0	0	0		ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.6283	0.00048876	4.7318	0.0014203	6.3601	0.0019091	300.1625165235427	39.066	0.21696	39.071	38.975	39.192	0.0046806	1515	124	0.7042165	0.07617068	0.70269704	288.54276	0	31.209839						360	10	2	NaN	NaN	NaN	0.84876	1	576	576		0.39566	0	1	42923			7477	6052	4297	4391	5954	5954					-0.007746449794694854
GGADEDDD	8	Unmodified	_GGADEDDD_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.12776203934993	2	397.127762	792.240971	0.79629	0.00031623	5.2818	0.0020976	6.0781	0.0024138	397.1299965908176	37.554	0.072243	37.554	37.53	37.602	0	1491	40	0.7190863	0.024154305	0.7190863	293.02734	0	9.842834						46	4	2	NaN	NaN	NaN	0.84887	1	4647	4647		0.32989	0	1	2643.7			7478	570	4298	4392	5955	5955					-0.16345970122699782
GGADEDDD	8	Unmodified						0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	397.127762	792.240971	1.3107	0.00052053	0.6576	0.00026115	1.9683	0.00078168	397.12808349301355	37.504	0.12048	37.506	37.458	37.579	0.0028229	1485	52	0.72280174	0.03157264	0.7212823	294.5414		12.865845	-0.023949	-0.0014631	0.001098	NaN	0.32989	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6096			7479	570	4298	4392							-0.16345970122699782
GGAFGGKV	8	Unmodified	_GGAFGGKV_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852	1	692.372601	691.365324	0.99101	0.00068615	2.7526	0.0019058	3.7436	0.002592	692.3752958369745	35.023	0.096485	35.023	34.975	35.072	0	714	46	1.1936152	0.027102828	1.1936152	243.8077	0	5.5360107						65	5	2	NaN	NaN	NaN	0.84887	1	3055	3055		0.32989	0	1	4111.5			7480	3151	4299	4393	5956	5956					0.007296169459436896
GGAGFGLF	8	Unmodified	_GGAGFGLF_					0	0	0			REV__ENST00000590787.1_1_19:10922561-10934848:+|nuORF	REV__ENST00000590787.1_1_19:10922561-10934848:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3617016479001	1	725.361702	724.354425	0.8098	0.0005874	6.303	0.0045719	7.1128	0.0051593	725.3666734207284	37.362	0.12024	37.362	37.314	37.434	0	738	40	1.179155	0.023504138	1.179155	240.64096	0	4.796707						81	6	2	NaN	NaN	NaN	0.84651	1	3675	3675		1.6704	0	1	5026.2	+		7481	12912	4300	4394	5957	5957					-0.018777854283371198
GGAGFVGS	8	Unmodified	_GGAGFVGS_					0	0	0		nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1	nc|ENSG00000115652|Q8NBZ7|UXS1	nc|ENSG00000115652|Q8NBZ7|UXS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3096660774002	1	651.309666	650.30239	0.59604	0.00038821	6.7799	0.0044158	7.3759	0.004804	651.3141839619111	39.068	0.193	39.068	39.044	39.237	0	795	88	1.1447623	0.052528024	1.1447623	234.11543	0	10.742508						225	9	3	NaN	NaN	NaN	0.82332	1	2054	2054		6.0903	0	1	21694			7482	2033	4301	4395	5958	5958					-0.03674948842080994
GGAGFVGS	8	Unmodified						0	0	0		nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1	nc|ENSG00000115652|Q8NBZ7|UXS1	nc|ENSG00000115652|Q8NBZ7|UXS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	651.309666	650.30239	0.9885	0.00064382	7.2577	0.004727	8.2462	0.0053708	651.3146960404823	39.066	0.1448	39.071	39.047	39.192	0.0046806	789	85	1.1483859	0.050708532	1.1468664	234.85649		10.370407	0.0013191	0.00015135	0.0010521	NaN	6.0903	207	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20006			7483	2033	4301	4395							-0.03674948842080994
GGAGGALP	8	Unmodified	_GGAGGALP_					0	0	0			REV__ENSG00000187902|ENST00000376325|SHISA7	REV__ENSG00000187902|ENST00000376325|SHISA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	0.30045	9.0183E-05	6.6655	0.0020007	6.9659	0.0020909	300.1628891454895	45.644	0.31199	45.655	45.607	45.919	0.011345	1512	76	0.7060759	0.046495914	0.70455647	289.3046	0	19.051056						263	14	2	NaN	NaN	NaN	0.84876	1	578	578		0.39566	0	1	19011	+		7484	11039	4302	4396	5959	5959					-0.007746449794694854
GGAGGGLY	8	Unmodified	_GGAGGGLY_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	326.158471272	2	326.158471	650.30239	1.5955	0.00052038	5.9481	0.00194	7.5436	0.0024604	326.16051524896073	45.694	0.096054	45.694	45.622	45.718	0	1536	70	0.69119483	0.042790234	0.69119483	282.7036	0	17.501495						121	5	2	NaN	NaN	NaN	0.84651	1	2055	2055		1.6704	0	1	10143			7485	3104	4303	4397	5960	5960					-0.036749488420923626
GGAGGVHL	8	Unmodified	_GGAGGVHL_					0	0	0		AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|6|2|sense	AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|6|2|sense	AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|6|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3521995941	1	667.3522	666.344923	1.1903	0.00079436	-4.0606	-0.0027099	-2.8703	-0.0019155	667.3500761702492	35.842	0.12048	35.843	35.794	35.915	0.00053024	777	76	1.1556307	0.045277953	1.1541113	236.22102	0	9.255203						142	6	2	NaN	NaN	NaN	0.84876	1	2403	2403		0.39566	0	1	14631			7486	25	4304	4398	5961	5961					-0.001595537138769032
GGAGGVIC	8	Unmodified	_GGAGGVIC_					0	0	0		ENST00000468156.1_1_19:36612802-36613030:+|nuORF	ENST00000468156.1_1_19:36612802-36613030:+|nuORF	ENST00000468156.1_1_19:36612802-36613030:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1548743380499	2	317.154874	632.295196	0.88821	0.0002817	0.18291	5.801E-05	1.0711	0.00033971	317.1551386659494	39.044	0.3849	39.044	38.78	39.165	0	1530	121	0.6949163	0.07436532	0.6949163	284.39185	0	30.433716						479	17	3	NaN	NaN	NaN	0.83849	1	1524	1524		4.0537	0	1	40089			7487	7127	4305	4399	5962	5962					-0.03566004714184601
GGAGPASK	8	Unmodified	_GGAGPASK_					0	0	0			REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	322.67174582275	2	322.671746	643.328939	1.5014	0.00048446	4.4464	0.0014347	5.9478	0.0019192	322.67356575548746	24.164	0.072433	24.164	24.14	24.213	0	1455	43	0.7413668	0.025977015	0.7413668	303.2918	0	10.627167						75	4	2	NaN	NaN	NaN	0.84897	1	1860	1860		0.27539	0	1	8589.2	+		7488	11840	4306	4400	5963	5963					-0.006992599507611885
GGAGPASK	8	Unmodified						0	0	0			REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	322.671746	643.328939	1.5014	0.00048446	4.4464	0.0014347	5.9478	0.0019192	322.67356575548746	24.164	0.072433	24.164	24.14	24.213	0	1455	43	0.7413668	0.025977015	0.7413668	303.2918		10.627167	0.0064941	0.00061919	0.00075972	NaN	0.27539	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8589.2	+		7489	11840	4306	4400							-0.006992599507611885
GGAGPASK	8	Unmodified						0	0	0			REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	REV__ENST00000360264.7_1_7:101897560-101897884:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	322.671746	643.328939	1.7898	0.00057753	2.6697	0.00086144	4.4595	0.001439	322.67226385584115	24.164	0.096474	24.151	24.127	24.224	-0.012749	1455	40	0.7413668	0.024120152	0.73984736	303.2918		9.867523	-0.0064941	-0.0005274	-0.00075972	NaN	0.27539	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10854	+		7490	11840	4306	4400							-0.006992599507611885
GGAGPHGP	8	Unmodified	_GGAGPHGP_					0	0	0		ENST00000473501.1_1_3:196753297-196754890:-|nuORF	REV__ENST00000488015.5_1_7:87840172-87849341:-|nuORF	REV__ENST00000488015.5_1_7:87840172-87849341:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3052494015001	1	649.305249	648.297973	-0.26699	-0.00017336	4.0731	0.0026447	3.8061	0.0024713	649.3070195735136	54.666	0.12019	54.666	54.593	54.713	-0.00061798	768	52	1.1610622	0.03076911	1.1595428	237.46408	0	6.2929993						97	6	2	NaN	NaN	NaN	0.84651	1	1921	1921		1.6704	0	1	7088.3			7491	7167	4307	4401	5964	5964					-0.04024413264994564
GGAGPHSQ	8	Unmodified	_GGAGPHSQ_					0	0	0		ENST00000591462.5_1_19:11560227-11561639:+|nuORF	ENST00000591462.5_1_19:11560227-11561639:+|nuORF	ENST00000591462.5_1_19:11560227-11561639:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3216277472001	1	710.321628	709.314351	1.2637	0.00089761	7.5384	0.0053547	8.8021	0.0062523	710.3265198449287	39.042	0.1448	39.047	39.047	39.192	0.0046806	735	49	1.1809633	0.02893281	1.1794438	241.10483	0	5.906906						116	7	3	NaN	NaN	NaN	0.84727	1	3342	3342		1.2418	0	1	7117.9			7492	7732	4308	4402	5965	5965					-0.05193332098906467
GGAGPHTA	8	Unmodified	_GGAGPHTA_					0	0	0			REV__ENST00000491599.1_2_1:155902488-155904164:-|nuORF	REV__ENST00000491599.1_2_1:155902488-155904164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3158140877999	1	667.315814	666.308538	2.2444	0.0014978	-3.7901	-0.0025292	-1.5457	-0.0010315	667.3138912552682	26.022	0.21724	26.011	25.962	26.18	-0.011135	696	91	1.2044523	0.05417955	1.2029328	246.20085	0	11.074768						275	10	3	NaN	NaN	NaN	0.84876	1	2394	2394		0.39566	0	1	28795	+		7493	9542	4309	4403	5966	5966					-0.03796430610589141
GGAGSPRK	8	Unmodified	_GGAGSPRK_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.4002124192001	1	729.400212	728.392936	0.62758	0.00045776	-0.80685	-0.00058852	-0.17926	-0.00013075	729.39920010874	35.434	0.12061	35.434	35.41	35.53	0	681	52	1.2134778	0.030683637	1.2134778	247.62007	0	6.2612457						108	6	2	NaN	NaN	NaN	0.8439	1	3742	3742		3.1533	0	1	8691.6			7494	3085	4310	4404	5967	5967					0.017875202061873097
GGAGSPRK	8	Unmodified						0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	729.400212	728.392936	0.98765	0.00072039	-1.4656	-0.001069	-0.47795	-0.00034862	729.399898227806	35.432	0.072304	35.433	35.409	35.481	0.00052643	687	52	1.2098682	0.030680418	1.2083488	246.8835		6.2605743	-0.00051499	-0.00029656	-0.0025645	NaN	3.1533	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6662.2			7495	3085	4310	4404							0.017875202061873097
GGAGTAPH	8	Unmodified	_GGAGTAPH_					0	0	0		ENST00000548760.2_1_12:98909947-98910106:-|nuORF	ENST00000548760.2_1_12:98909947-98910106:-|nuORF	ENST00000548760.2_1_12:98909947-98910106:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3158140878	1	667.315814	666.308538	2.0768	0.0013859	-4.1889	-0.0027953	-2.112	-0.0014094	667.312901571529	25.998	0.14481	25.998	25.95	26.094	0	696	67	1.2044523	0.039723158	1.2044523	246.20085	0	8.119751						199	7	2	NaN	NaN	NaN	0.84692	1	2483	2483		1.4396	0	1	27521			7496	7533	4311	4405	5968	5968					-0.03796430610577772
GGAGTAPH	8	Unmodified						0	0	0		ENST00000548760.2_1_12:98909947-98910106:-|nuORF	ENST00000548760.2_1_12:98909947-98910106:-|nuORF	ENST00000548760.2_1_12:98909947-98910106:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.315814	666.308538	2.2444	0.0014978	-3.7901	-0.0025292	-1.5457	-0.0010315	667.3138912552682	26.022	0.21724	26.011	25.962	26.18	-0.011135	696	91	1.2044523	0.05417955	1.2029328	246.20085		11.074768	0.0063917	0.00017699	-0.00075972	NaN	1.4396	275	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28795			7497	7533	4311	4405							-0.03796430610577772
GGAGTSFS	8	Unmodified	_GGAGTSFS_					0	0	0			REV__ENST00000479463.1_1_11:205472-205820:-|nuORF	REV__ENST00000479463.1_1_11:205472-205820:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1533858941	2	342.153386	682.292219	1.1213	0.00038367	5.1317	0.0017558	6.253	0.0021395	342.15548109384326	32.272	0.19308	32.268	32.172	32.365	-0.0037613	1521	61	0.70049703	0.037190676	0.6989776	286.23242	0	15.196625						186	9	2	NaN	NaN	NaN	0.8439	1	2794	2794		3.1533	0	1	21126	+		7498	12372	4312	4406	5969	5969					-0.06163556567332762
GGAGTSFS	8	Unmodified						0	0	0			REV__ENST00000479463.1_1_11:205472-205820:-|nuORF	REV__ENST00000479463.1_1_11:205472-205820:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.153386	682.292219	1.1213	0.00038367	5.1317	0.0017558	6.253	0.0021395	342.15548109384326	32.272	0.19308	32.268	32.172	32.365	-0.0037613	1521	61	0.70049703	0.037190676	0.6989776	286.23242		15.196625	-0.0024234	0.00013067	-0.00075972	NaN	3.1533	186	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21126	+		7499	12372	4312	4406							-0.06163556567332762
GGAKAKRT	8	Unmodified	_GGAKAKRT_					0	0	0			REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4737117133001	1	788.473712	787.466435	-0.19627	-0.00015475	8.0076	0.0063138	7.8114	0.006159	788.4800246817499	55.795	0.12019	55.794	55.746	55.866	-0.00059128	504	73	1.3196158	0.043043613	1.3180964	268.90503	0	8.77121						193	6	4	NaN	NaN	NaN	0.84727	1	4503	4503		1.2418	0.91196	1	38317	+		7500	12499	4313	4407	5970	5970					0.06420068648651522
GGAKAKRT	8	Unmodified						0	0	0			REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	788.473712	787.466435	2.105	0.0016598	6.1989	0.0048877	8.3039	0.0065474	788.4783133936428	55.797	0.1682	55.797	55.749	55.917	0	504	169	1.3196158	0.1006068	1.3196158	268.90503		20.501144	0.0013802	-0.00066733	0.00075972	NaN	1.2418	352	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97897	+		7501	12499	4313	4407							0.06420068648651522
GGAKAKRT	8	Unmodified						0	0	0			REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	788.473712	787.466435	-0.19627	-0.00015475	8.0076	0.0063138	7.8114	0.006159	788.4800246817499	55.795	0.12019	55.794	55.746	55.866	-0.00059128	504	73	1.3196158	0.043043613	1.3180964	268.90503		8.77121	-0.0013802	0.0007588	-0.00075972	NaN	1.2418	193	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38317	+		7502	12499	4313	4407							0.06420068648651522
GGALHSAG	8	Unmodified	_GGALHSAG_					0	0	0			REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3314641520001	1	669.331464	668.324188	0.6666	0.00044617	-10.099	-0.0067594	-9.4322	-0.0063132	669.3251026528902	39.068	0.14475	39.068	39.044	39.189	0	765	82	1.1628724	0.048868775	1.1628724	237.68716	0	9.988586						251	7	3	NaN	NaN	NaN	0.84207	1	2547	2547		3.5732	0	1	30794	+		7503	13359	4314	4408	5971	5971					-0.023241440935180435
GGALHSAG	8	Unmodified						0	0	0			REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|90|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.331464	668.324188	0.6666	0.00044617	-10.099	-0.0067594	-9.4322	-0.0063132	669.3251026528902	39.068	0.14475	39.068	39.044	39.189	0	765	82	1.1628724	0.048868775	1.1628724	237.68716		9.988586	-0.0013191	-0.00013086	-0.00014526	NaN	3.5732	251	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30794	+		7504	13359	4314	4408							-0.023241440935180435
GGALSVGV	8	Unmodified	_GGALSVGV_					0	0	0		ENST00000455368.6_2_4:100484727-100484865:-|nuORF	ENST00000455368.6_2_4:100484727-100484865:-|nuORF	ENST00000455368.6_2_4:100484727-100484865:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3722663342002	1	659.372266	658.36499	0.81076	0.00053459	0.66275	0.000437	1.4735	0.00097159	659.3735446498739	33.045	0.096504	33.045	33.045	33.142	0	786	58	1.1501974	0.034425974	1.1501974	235.16768	0	7.038681						106	5	2	NaN	NaN	NaN	0.84207	1	2269	2269		3.5732	0	1	9690.8			7505	7057	4315	4409	5972	5972					0.02214197226101078
GGALVSSI	8	Unmodified	_GGALVSSI_					0	0	0			REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3984810847002	1	703.398481	702.391205	0.36584	0.00025733	0.16943	0.00011917	0.53526	0.0003765	703.3981472232872	38.131	0.096107	38.131	38.107	38.203	0	711	34	1.1954219	0.019871116	1.1954219	244.10231	0	4.0576324						75	5	2	NaN	NaN	NaN	0.84727	1	3257	3257		1.2418	0	1	4504.5	+	+	7506	8258	4316	4410	5973	5973					0.02810466397579603
GGALVSSI	8	Unmodified						0	0	0			REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	703.398481	702.391205	0.36584	0.00025733	0.16943	0.00011917	0.53526	0.0003765	703.3981472232872	38.131	0.096107	38.131	38.107	38.203	0	711	34	1.1954219	0.019871116	1.1954219	244.10231		4.0576324	-0.00050766	-0.0010229	-0.0010466	NaN	1.2418	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4504.5	+	+	7507	8258	4316	4410							0.02810466397579603
GGALVSSI	8	Unmodified						0	0	0			REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	REV__KRT14|p.G67Afs*51|1|0.25|ENSG00000186847|chr17:41586635-41586635|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	703.398481	702.391205	1.7211	0.0012106	3.2053	0.0022546	4.9264	0.0034652	703.4009964447529	38.129	0.12022	38.132	38.084	38.204	0.0034218	705	34	1.1990347	0.01986897	1.1975152	244.84		4.057205	0.00050766	0.0011126	0.0010466	NaN	1.2418	70	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3834.4	+	+	7508	8258	4316	4410							0.02810466397579603
GGAPAGAG	8	Unmodified	_GGAPAGAG_					0	0	0		ENST00000521049.5_1_8:71510241-71520545:-|nuORF	ENST00000521049.5_1_8:71510241-71520545:-|nuORF	ENST00000521049.5_1_8:71510241-71520545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2678012627001	1	557.267801	556.260525	1.2313	0.00068619	2.3038	0.0012838	3.5352	0.00197	557.268364915985	22.5	0.12057	22.486	22.438	22.559	-0.013731	1245	88	0.87076044	0.05337143	0.869241	178.69786	0	10.952911						152	6	2	NaN	NaN	NaN	0.84876	1	443	443		0.39566	0	1	17819			7509	7399	4317	4411	5974	5974					-0.03535504530611888
GGAPAPLP	8	Unmodified	_GGAPAPLP_					0	0	0		ENST00000291442.3_1_19:17351565-17356474:-|nuORF	ENST00000291442.3_1_19:17351565-17356474:-|nuORF	ENST00000291442.3_1_19:17351565-17356474:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3773517121	1	679.377352	678.370075	2.0566	0.0013972	6.5848	0.0044735	8.6414	0.0058707	679.3820961484809	25.949	0.12066	25.938	25.89	26.01	-0.0116	753	55	1.1701111	0.032563448	1.1685916	239.0956	0	6.6538696						114	6	2	NaN	NaN	NaN	0.84876	1	2725	2725		0.39566	0	1	12159			7510	6387	4318	4412	5975	5975					0.018025010887072312
GGAPGEAVVRL	11	Unmodified	_GGAPGEAVVRL_					0	0	0			REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2905480775	2	513.290548	1024.56654	1.6819	0.00086332	-1.6337	-0.00083858	0.048212	2.4747E-05	513.2898583469018	15.58	0.21577	15.568	15.544	15.76	-0.012201	1275	49	0.85233563	0.029492497	0.8508162	345.9849	0	11.971741						319	10	5	NaN	NaN	NaN	0.068415	1	9381	9381		45.165	3.3804	1	82342	+		7511	12238	4319	4413	5976	5976					0.055242611917947215
GGAPGEAVVRL	11	Unmodified						0	0	0			REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.290548	1024.56654	2.1272	0.0010919	-2.0255	-0.0010397	0.10169	5.2196E-05	513.2896007348136	15.582	0.16811	15.582	15.534	15.702	0	1275	46	0.85233563	0.027650714	0.85233563	345.9849		11.224121	0.00711	-0.00023888	0.00075972	NaN	45.165	294	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81128	+		7512	12238	4319	4413							0.055242611917947215
GGAPGEAVVRL	11	Unmodified						0	0	0			REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	REV__ENST00000453604.6_1_19:11516043-11529954:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.290548	1024.56654	1.6819	0.00086332	-1.6337	-0.00083858	0.048212	2.4747E-05	513.2898583469018	15.58	0.21577	15.568	15.544	15.76	-0.012201	1275	49	0.85233563	0.029492497	0.8508162	345.9849		11.971741	-0.00711	0.00016327	-0.00075972	NaN	45.165	319	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82342	+		7513	12238	4319	4413							0.055242611917947215
GGAPRRHG	8	Unmodified	_GGAPRRHG_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4332438821001	1	807.433244	806.425967	2.2952	0.0018532	-5.009	-0.0040444	-2.7138	-0.0021912	807.4310708354781	53.731	0.10546	53.731	53.626	53.731	0	408	163	1.3769034	0.096683145	1.3769034	280.46582	0	19.693695						347	4	3	NaN	NaN	NaN	0.84887	1	4844	4844		0.32989	0	1	135560	+		7514	8799	4320	4414	5977	5977					0.015011470488957457
GGAPSAWA	8	Unmodified	_GGAPSAWA_					0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3362151788999	1	716.336215	715.328939	1.0495	0.00075176	5.5499	0.0039756	6.5994	0.0047274	716.3399024586256	29.835	0.31368	29.828	29.803	30.117	-0.0070667	621	94	1.2495319	0.055844903	1.2480124	255.06313	0	11.399445						493	14	3	NaN	NaN	NaN	0.79379	1	3446	3446		10.052	3.2576	1	95951			7515	3009	4321	4415	5978	5978					-0.04011259950777912
GGAQGCGK	8	Unmodified	_GGAQGCGK_					0	0	0		FCGBP|p.E2242K|1|0.21|ENSG00000275395|chr19:39891919-39891919|C/T|missense_variant	FCGBP|p.E2242K|1|0.21|ENSG00000275395|chr19:39891919-39891919|C/T|missense_variant	FCGBP|p.E2242K|1|0.21|ENSG00000275395|chr19:39891919-39891919|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.303534842	1	677.303535	676.296258	2.2759	0.0015415	-4.9855	-0.0033767	-2.7096	-0.0018352	677.3004503943977	16.802	0.023991	16.789	16.789	16.813	-0.013294	747	55	1.1737292	0.0325495	1.1722097	239.8495	0	6.651428						46	2	2	NaN	NaN	NaN	0.84887	1	2674	2674		0.32989	0	1	2865.4			7516	7800	4322	4416	5979	5979					-0.05483790345272155
GGARGALL	8	Unmodified	_GGARGALL_					0	0	0		ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENST00000469704.1_1_20:17934783-17949290:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.4256988882001	1	714.425699	713.418422	1.4412	0.0010296	-7.4901	-0.0053511	-6.0489	-0.0043215	714.4207249824575	29.836	0.12066	29.836	29.811	29.932	0	582	46	1.2729256	0.026972651	1.2729256	259.85156	0	5.506134						69	6	2	NaN	NaN	NaN	0.84455	1	3485	3485		2.7852	0	1	4530.9			7517	7140	4323	4417	5980	5980					0.05024994728614729
GGASAKVA	8	Unmodified	_GGASAKVA_					0	0	0			REV__nc|ENSG00000131196|O95644-8|NFATC1	REV__nc|ENSG00000131196|O95644-8|NFATC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.3675153073	1	660.367515	659.360239	1.0742	0.00070937	-10.465	-0.0069109	-9.391	-0.0062015	660.3611889653965	33.914	0.43433	33.914	33.842	34.276	0	795	91	1.1447623	0.054365516	1.1447623	234.04929	0	11.115158						689	19	3	NaN	NaN	NaN	0.84897	1	2286	2286		0.27539	0	1	185040	+		7518	9512	4324	4418	5981	5981					0.01693313083319481
GGASAKVA	8	Unmodified						0	0	0			REV__nc|ENSG00000131196|O95644-8|NFATC1	REV__nc|ENSG00000131196|O95644-8|NFATC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	660.367515	659.360239	1.0742	0.00070937	-10.465	-0.0069109	-9.391	-0.0062015	660.3611889653965	33.914	0.43433	33.914	33.842	34.276	0	795	91	1.1447623	0.054365516	1.1447623	234.04929		11.115158	0	0	0	NaN	0.27539	689	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185040	+		7519	9512	4324	4418							0.01693313083319481
GGASGPKR	8	Unmodified	_GGASGPKR_					0	0	0			REV__nc|ENSG00000163539|O75122-2|CLASP2	REV__nc|ENSG00000163539|O75122-2|CLASP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.4002124192	1	729.400212	728.392936	0.98765	0.00072039	-1.4656	-0.001069	-0.47795	-0.00034862	729.399898227806	35.432	0.072304	35.433	35.409	35.481	0.00052643	687	52	1.2098682	0.030680418	1.2083488	246.8835	0	6.2605743						77	4	2	NaN	NaN	NaN	0.84727	1	3665	3665		1.2418	0	1	6662.2	+		7520	10284	4325	4419	5982	5982					0.01787520206175941
GGASTSAM	8	Unmodified	_GGASTSAM_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.14724627119995	2	341.147246	680.27994	1.559	0.00053184	-2.2149	-0.00075562	-0.65597	-0.00022378	341.14697323462775	28.435	0.26544	28.426	28.354	28.619	-0.0089798	1524	109	0.698637	0.066928744	0.69711757	285.48898	0	27.349579						516	12	5	NaN	NaN	NaN	0.8439	1	2759	2759		3.1533	0	1	82793	+		7521	10341	4326	4420	5983	5983					-0.07298916302033831
GGASTSAM	8	Unmodified						0	0	0			REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	341.147246	680.27994	1.9523	0.00066602	-1.8007	-0.0006143	0.15161	5.1721E-05	341.1468962262578	28.436	0.24134	28.436	28.388	28.629	0	1524	103	0.698637	0.063224256	0.698637	285.48898		25.835754	0.0048218	0.00014347	0.00075972	NaN	3.1533	425	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85162	+		7522	10341	4326	4420							-0.07298916302033831
GGASTSAM	8	Unmodified						0	0	0			REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	REV__nc|ENSG00000164509|Q8NI17-9|IL31RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	341.147246	680.27994	1.559	0.00053184	-2.2149	-0.00075562	-0.65597	-0.00022378	341.14697323462775	28.435	0.26544	28.426	28.354	28.619	-0.0089798	1524	109	0.698637	0.066928744	0.69711757	285.48898		27.349579	-0.0048218	-0.00013919	-0.00075972	NaN	3.1533	516	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82793	+		7523	10341	4326	4420							-0.07298916302033831
GGAVAAAL	8	Unmodified	_GGAVAAAL_					0	0	0		nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-2|SMARCD2	nc|ENSG00000108604|Q92925-2|SMARCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.3617016478998	1	629.361702	628.354425	1.5599	0.00098175	-6.7384	-0.0042409	-5.1785	-0.0032591	629.3571561994166	29.691	0.096523	29.691	29.667	29.763	0	780	43	1.1538198	0.025354266	1.1538198	236.13747	0	5.1889343						88	5	2	NaN	NaN	NaN	0.84876	1	1375	1375		0.39566	0	1	13857			7524	1684	4327	4421	5984	5984					0.025382145716434934
GGAVASTI	8	Unmodified	_GGAVASTI_					0	0	0		ENSG00000174175|ENST00000263686|SELP	ENSG00000174175|ENST00000263686|SELP	ENSG00000174175|ENST00000263686|SELP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3671809563001	1	675.367181	674.359904	0.43128	0.00029127	6.5066	0.0043944	6.9379	0.0046856	675.3714109164762	39.117	0.072403	39.117	39.093	39.165	0	747	76	1.1737292	0.04523909	1.1737292	239.86311	0	9.245056						116	4	2	NaN	NaN	NaN	0.84887	1	2718	2718		0.32989	0	1	6614.3			7525	4928	4328	4422	5985	5985					0.009698933634808782
GGAVMAVA	8	Unmodified	_GGAVMAVA_					0	0	0			REV__ENST00000447274.6_1_11:67056665-67056920:+|nuORF	REV__ENST00000447274.6_1_11:67056665-67056920:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021	1	675.349422	674.342146	1.2621	0.00085235	3.5365	0.0023884	4.7986	0.0032407	675.3517112755935	23.947	0.07233	23.934	23.886	23.958	-0.013048	750	121	1.1719203	0.07234001	1.1704009	239.49356	0	14.783386						129	4	2	NaN	NaN	NaN	0.84651	1	2623	2623		1.6704	0	1	10616	+		7526	12211	4329	4423	5986	5986					-0.008051451630308293
GGAVPGVP	8	Unmodified	_GGAVPGVP_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479	1	653.361702	652.354425	0.44364	0.00028986	-2.6622	-0.0017393	-2.2185	-0.0014495	653.3609331746002	40.895	0.072086	40.902	40.83	40.902	0.0074959	762	43	1.1646824	0.025337934	1.163163	238.17392	0	5.181534						89	4	3	NaN	NaN	NaN	0.84876	1	2042	2042		0.39566	0	1	13700	+		7527	10175	4330	4424	5987	5987					0.014342145716568666
GGAVPGVP	8	Unmodified	_GGAVPGVP_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479	1	653.361702	652.354425	0.76571	0.00050029	-2.4022	-0.0015695	-1.6365	-0.0010692	653.3602413345257	39.091	0.19302	39.095	39.047	39.24	0.0046806	777	76	1.1556307	0.045253634	1.1541113	236.32288	0	9.254227						306	9	3	NaN	NaN	NaN	0.84876	1	2043	2043		0.39566	0	1	36021	+		7528	10175	4330	4424	5988	5988					0.014342145716568666
GGAVPGVP	8	Unmodified	_GGAVPGVP_					0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479	1	653.361702	652.354425	0.42846	0.00027994	-1.269	-0.00082913	-0.84055	-0.00054918	653.3612397922761	40.967	0.072063	40.974	40.95	41.022	0.0074959	759	40	1.1664921	0.023524284	1.1649727	238.544	0	4.8106384						76	4	2	NaN	NaN	NaN	0.84876	1	2044	2044		0.39566	0	1	12500	+		7529	10175	4330	4424	5989	5989					0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.52749	0.00034464	-2.3595	-0.0015416	-1.832	-0.001197	653.3601769401342	39.093	0.28947	39.093	39.044	39.334	0	783	76	1.1520087	0.045258403	1.1520087	235.58218		9.2552185	-0.0013292	1.537E-05	-0.0010513	NaN	0.39566	370	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41256	+		7530	10175	4330	4424							0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.63186	0.00041284	-2.8874	-0.0018865	-2.2555	-0.0014737	653.3613409100363	40.921	0.14415	40.921	40.849	40.993	0	762	37	1.1646824	0.021718264	1.1646824	238.17392		4.4413147	-0.026841	-0.00059027	-0.00014516	NaN	0.39566	138	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15123	+		7531	10175	4330	4424							0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.72086	0.00047099	0.81841	0.00053472	1.5393	0.0010057	653.362203084753	41.209	0.14438	41.209	41.185	41.329	0	771	61	1.1592519	0.03620875	1.1592519	237.0634		7.4045715	0.15339	0.00049473	-0.0019555	NaN	0.39566	151	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19151	+		7532	10175	4330	4424							0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	653.361702	652.354425	0.76571	0.00050029	-2.4022	-0.0015695	-1.6365	-0.0010692	653.3602413345257	39.091	0.19302	39.095	39.047	39.24	0.0046806	777	76	1.1556307	0.045253634	1.1541113	236.32288		9.254227	0.0013292	-1.25E-05	0.0010513	NaN	0.39566	306	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36021	+		7533	10175	4330	4424							0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	653.361702	652.354425	0.42846	0.00027994	-1.269	-0.00082913	-0.84055	-0.00054918	653.3612397922761	40.967	0.072063	40.974	40.95	41.022	0.0074959	759	40	1.1664921	0.023524284	1.1649727	238.544		4.8106384	0.026841	0.0004671	0.00014516	NaN	0.39566	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12500	+		7534	10175	4330	4424							0.014342145716568666
GGAVPGVP	8	Unmodified						0	0	0			REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	REV__nc|ENSG00000158966|Q5VU97-2|CACHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	653.361702	652.354425	0.44364	0.00028986	-2.6622	-0.0017393	-2.2185	-0.0014495	653.3609331746002	40.895	0.072086	40.902	40.83	40.902	0.0074959	762	43	1.1646824	0.025337934	1.163163	238.17392		5.181534	-0.15339	-0.0017793	0.0019555	NaN	0.39566	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13700	+		7535	10175	4330	4424							0.014342145716568666
GGAVPPAA	8	Unmodified	_GGAVPPAA_					0	0	0		ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.3460515836999	1	639.346052	638.338775	1.6363	0.0010462	-3.2111	-0.002053	-1.5748	-0.0010068	639.3442881257586	35.022	0.072403	35.022	34.998	35.07	-4.5776E-05	789	46	1.1483859	0.027172565	1.1468664	234.94713	0	5.559204						75	4	2	NaN	NaN	NaN	0.84876	1	1607	1607		0.39566	0	1	9023.1			7536	3221	4331	4425	5990	5990					0.005139280546018199
GGAVPPAP	8	Unmodified	_GGAVPPAP_					0	0	0		ENSG00000069020|ENST00000403625|MAST4;nc|ENSG00000069020|O15021-4|MAST4	ENSG00000069020|ENST00000403625|MAST4	ENSG00000069020|ENST00000403625|MAST4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3617016479	1	665.361702	664.354425	2.6121	0.001738	-3.3286	-0.0022147	-0.71658	-0.00047678	665.3588344001661	40.27	0.048138	40.276	40.276	40.324	0.0060463	738	25	1.179155	0.014466405	1.1776356	241.04411	0	2.9572449						37	3	2	NaN	NaN	NaN	0.84876	1	2355	2355		0.39566	0	1	2105.4			7537	740	4332	4426	5991	5991					0.008822145716521845
GGAVSVAM	8	Unmodified	_GGAVSVAM_					0	0	0		ENST00000495641.5_1_9:95858537-95872895:+|nuORF;ENST00000466929.5_1_9:95858543-95872895:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	ENST00000495641.5_1_9:95858537-95872895:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3443370242001	1	691.344337	690.337061	1.1357	0.00078514	2.3789	0.0016447	3.5146	0.0024298	691.3458542594516	22.38	0.14451	22.366	22.246	22.39	-0.013733	738	88	1.179155	0.052426815	1.1776356	240.86102	0	10.709						173	7	2	NaN	NaN	NaN	0.8439	1	2970	2970		3.1533	0	1	12770			7538	7118	4333	4427	5992	5992					-0.02049449025651029
GGCAGCCG	8	Unmodified	_GGCAGCCG_					0	0	0		ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.1683632685001	1	627.168363	626.161087	2.1704	0.0013612	7.523	0.0047182	9.6934	0.0060794	627.1735056155549	25.419	0.072388	25.407	25.382	25.455	-0.012011	834	46	1.12119	0.027219176	1.1196705	229.47656	0	5.5710144						63	4	2	NaN	NaN	NaN	0.84945	1	1194	1194		0	0	1	3705.4			7539	6389	4334	4428	5993	5993					-0.16694729802873098
GGCGHDEC	8	Unmodified	_GGCGHDEC_					0	0	0		nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.11816286824995	2	389.118163	776.221773	1.6777	0.00065282	-6.0641	-0.0023597	-4.3864	-0.0017068	389.11614677582617	32.537	0.12069	32.534	32.51	32.631	-0.0031052	1452	28	0.74322224	0.016698599	0.7417028	302.96896	0	6.807068						52	6	2	NaN	NaN	NaN	0.84692	1	4369	4369		1.4396	0	1	3172.9			7540	5376	4335	4429	5994	5994					-0.1752892121895684
GGCPEACA	8	Unmodified	_GGCPEACA_					0	0	0		ENST00000479501.5_1_20:61943331-61950713:+|nuORF	ENST00000479501.5_1_20:61943331-61950713:+|nuORF	ENST00000479501.5_1_20:61943331-61950713:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.2487220795	1	707.248722	706.241446	-0.033649	-2.3798E-05	-5.8204	-0.0041164	-5.854	-0.0041402	707.2455771533574	46.148	0.16798	46.159	46.015	46.183	0.010719	468	40	1.3411216	0.023284197	1.3396021	273.82532	0	4.754059						99	8	2	NaN	NaN	NaN	0.84887	1	3273	3273		0.32989	0	1	5449.5			7541	7196	4336	4430	5995	5995					-0.12342545208196043
GGCSPREL	8	Unmodified	_GGCSPREL_					0	0	0			REV__ENST00000592992.1_1_19:38895920-38896347:+|nuORF	REV__ENST00000592992.1_1_19:38895920-38896347:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	818.3825134445	1	818.382513	817.375237	1.8293	0.001497	-6.6913	-0.005476	-4.862	-0.003979	818.3771620358476	23.151	0.19299	23.138	23.09	23.283	-0.013294	558	46	1.2873057	0.026952505	1.2857863	262.15656	0	5.4888						156	9	2	NaN	NaN	NaN	0.72013	1	4874	4874		17.799	0.018654	1	17300	+		7542	12934	4337	4431	5996	5996					-0.040755631109846036
GGCSPREL	8	Unmodified						0	0	0			REV__ENST00000592992.1_1_19:38895920-38896347:+|nuORF	REV__ENST00000592992.1_1_19:38895920-38896347:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	818.382513	817.375237	1.8293	0.001497	-6.6913	-0.005476	-4.862	-0.003979	818.3771620358476	23.151	0.19299	23.138	23.09	23.283	-0.013294	558	46	1.2873057	0.026952505	1.2857863	262.15656		5.4888	0.0050959	-0.0001233	0.0001387	NaN	17.799	156	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17300	+		7543	12934	4337	4431							-0.040755631109846036
GGDAECPG	8	Unmodified	_GGDAECPG_					0	0	0		ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2508305695001	1	705.250831	704.243554	1.4939	0.0010536	0.37727	0.00026607	1.8712	0.0013197	705.2518622634135	26.336	0.048256	26.336	26.336	26.384	0	732	82	1.1827712	0.048816442	1.1827712	241.50691	0	9.967697						115	3	2	NaN	NaN	NaN	0.84727	1	3285	3285		1.2418	0	1	11637			7544	5123	4338	4432	5997	5997					-0.12039793198732696
GGDAECPG	8	Unmodified						0	0	0		ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	705.250831	704.243554	1.1937	0.00084182	1.4309	0.0010091	2.6245	0.0018509	705.2514791483337	26.36	0.096529	26.349	26.324	26.421	-0.011135	729	94	1.184579	0.056042433	1.1830596	241.87605		11.443146	0.0063622	0.0002662	0.00014419	NaN	1.2418	170	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24640			7545	5123	4338	4432							-0.12039793198732696
GGDHGQLN	8	Unmodified	_GGDHGQLN_					0	0	0			REV__ENST00000488136.5_1_9:79117194-79117293:+|nuORF	REV__ENST00000488136.5_1_9:79117194-79117293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.3536561571	1	797.353656	796.34638	2.22	0.0017702	-8.3392	-0.0066493	-6.1192	-0.0048792	797.3469944197018	26.36	0.16895	26.36	26.336	26.505	0	561	46	1.2855089	0.026952505	1.2855089	261.90488	0	5.491211						89	8	2	NaN	NaN	NaN	0.81251	1	4700	4700		7.5404	0.67717	1	5980.3	+		7546	12437	4339	4433	5998	5998					-0.05993964415768005
GGDKLACG	8	Unmodified	_GGDKLACG_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3345006194	1	720.334501	719.327224	0.90569	0.0006524	6.0715	0.0043735	6.9771	0.0050259	720.3388344020567	31.355	0.14475	31.35	31.326	31.47	-0.0050716	669	49	1.2206948	0.028858542	1.2191753	249.1507	0	5.890213						115	7	2	NaN	NaN	NaN	0.83582	1	3512	3512		4.4131	1.2597	1	7898.7			7547	3014	4340	4434	5999	5999					-0.043666370310234015
GGDPFGTCL	9	Unmodified	_GGDPFGTCL_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.3712800561999	1	866.37128	865.364004	1.4494	0.0012557	5.6996	0.004938	7.149	0.0061937	866.3756398577815	26.36	0.16892	26.349	26.324	26.493	-0.011135	408	52	1.3769034	0.030380487	1.375384	280.1457	0	6.181244						150	8	2	NaN	NaN	NaN	0.39244	1	5468	5468		14.042	3.4366	1	13053	+		7548	10890	4341	4435	6000	6000					-0.07406385205138122
GGDPFGTCL	9	Unmodified						0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	866.37128	865.364004	1.4494	0.0012557	5.6996	0.004938	7.149	0.0061937	866.3756398577815	26.36	0.16892	26.349	26.324	26.493	-0.011135	408	52	1.3769034	0.030380487	1.375384	280.1457		6.181244	-0.0057116	0.000467	0.00013392	NaN	14.042	150	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13053	+		7549	10890	4341	4435							-0.07406385205138122
GGDPSEFI	8	Unmodified	_GGDPSEFI_					0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.3675748868001	1	821.367575	820.360298	2.1068	0.0017305	4.3932	0.0036084	6.5	0.0053389	821.3713639530392	27.76	0.2172	27.76	27.712	27.929	0	453	73	1.3500742	0.042961	1.3500742	274.9226	0	8.748383						396	10	3	NaN	NaN	NaN	0.62311	1	5019	5019		23.85	4.5657	1	79244	+		7550	9217	4342	4436	6001	6001					-0.057067317073233426
GGDPSEFI	8	Unmodified	_GGDPSEFI_					0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.3675748868001	1	821.367575	820.360298	1.3101	0.0010761	4.4586	0.0036621	5.7686	0.0047382	821.3707376966086	27.783	0.31376	27.774	27.702	28.015	-0.009552	453	91	1.3500742	0.053718448	1.3485547	274.9226	0	10.938965						386	14	2	NaN	NaN	NaN	0.65075	1	4908	4908		22.126	8.3893	1	84783	+		7551	9217	4342	4436	6002	6002					-0.057067317073233426
GGDPSEFI	8	Unmodified						0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.367575	820.360298	2.1068	0.0017305	4.3932	0.0036084	6.5	0.0053389	821.3713639530392	27.76	0.2172	27.76	27.712	27.929	0	453	73	1.3500742	0.042961	1.3500742	274.9226		8.748383	-0.0068716	-2.3911E-05	0.00075972	NaN	23.85	396	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79244	+		7552	9217	4342	4436							-0.057067317073233426
GGDPSEFI	8	Unmodified						0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.367575	820.360298	1.3101	0.0010761	4.4586	0.0036621	5.7686	0.0047382	821.3707376966086	27.783	0.31376	27.774	27.702	28.015	-0.009552	453	91	1.3500742	0.053718448	1.3485547	274.9226		10.938965	0.0068716	2.982E-05	-0.00075972	NaN	23.85	386	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84783	+		7553	9217	4342	4436							-0.057067317073233426
GGDSLAMI	8	Unmodified	_GGDSLAMI_					0	0	0			REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3654663968001	1	763.365466	762.35819	2.0295	0.0015493	1.0649	0.00081291	3.0944	0.0023622	763.3661366633887	25.37	0.21715	25.358	25.31	25.527	-0.012011	549	64	1.292695	0.03771746	1.2911756	263.56784	0	7.690216						304	10	3	NaN	NaN	NaN	0.76633	1	4168	4168		13.737	0	1	42937	+		7554	8932	4343	4437	6003	6003					-0.03249483716774648
GGDSLAMI	8	Unmodified						0	0	0			REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	763.365466	762.35819	1.9938	0.001522	0.0059763	4.5621E-06	1.9997	0.0015265	763.36506870226	25.371	0.21714	25.371	25.322	25.539	0	552	88	1.2908988	0.05210817	1.2908988	263.2016		10.624359	0.0061304	-0.00050877	-0.00013841	NaN	13.737	317	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44215	+		7555	8932	4343	4437							-0.03249483716774648
GGDSLAMI	8	Unmodified						0	0	0			REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	763.365466	762.35819	2.0295	0.0015493	1.0649	0.00081291	3.0944	0.0023622	763.3661366633887	25.37	0.21715	25.358	25.31	25.527	-0.012011	549	64	1.292695	0.03771746	1.2911756	263.56784		7.690216	-0.0061304	0.00029958	0.00013841	NaN	13.737	304	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42937	+		7556	8932	4343	4437							-0.03249483716774648
GGEGDGDC	8	Unmodified	_GGEGDGDC_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.2093596853	1	709.20936	708.202083	0.73606	0.00052202	-3.7648	-0.00267	-3.0287	-0.002148	709.2073557787512	41.137	0.096169	41.137	41.137	41.233	0	678	28	1.2152823	0.016240716	1.2152823	248.11885	0	3.3158112						50	5	2	NaN	NaN	NaN	0.84887	1	3382	3382		0.32989	0.32989	1	3116.7	+		7557	10102	4344	4438	6004	6004					-0.1636897395806045
GGEGDGDC	8	Unmodified						0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.20936	708.202083	0.73606	0.00052202	-3.7648	-0.00267	-3.0287	-0.002148	709.2073557787512	41.137	0.096169	41.137	41.137	41.233	0	678	28	1.2152823	0.016240716	1.2152823	248.11885		3.3158112	0.045238	-0.00055149	0.001662	NaN	0.32989	50	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3116.7	+		7558	10102	4344	4438							-0.1636897395806045
GGEGDGDC	8	Unmodified						0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.20936	708.202083	0.81492	0.00057795	-2.286	-0.0016213	-1.4711	-0.0010433	709.2079064967774	41.039	0.21664	41.046	41.022	41.239	0.0074959	681	40	1.2134778	0.023461461	1.2119584	247.75041		4.7900085	-0.045238	0.00049723	-0.001662	NaN	0.32989	105	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7742.1	+		7559	10102	4344	4438							-0.1636897395806045
GGELCPAF	8	Unmodified	_GGELCPAF_					0	0	0			REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	REV__FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.3549017105	1	793.354902	792.347625	1.8495	0.0014673	-3.5185	-0.0027914	-1.669	-0.0013241	793.3518456814892	28.459	0.072426	28.451	28.403	28.475	-0.0083504	474	37	1.3375392	0.021496534	1.3360198	272.52863	0	4.380005						68	4	2	NaN	NaN	NaN	0.84651	1	4570	4570		1.6704	0	1	4265.2	+		7560	8689	4345	4439	6005	6005					-0.05685466371221537
GGELDLVV	8	Unmodified	_GGELDLVV_					0	0	0		nc|ENSG00000185347|Q86SX3-4|TEDC1;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	nc|ENSG00000185347|Q86SX3-4|TEDC1	nc|ENSG00000185347|Q86SX3-4|TEDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.4352605215	1	801.435261	800.427984	2.6062	0.0020887	-4.4611	-0.0035753	-1.8549	-0.0014866	801.4331522127018	27.735	0.048267	27.726	27.702	27.75	-0.009552	504	31	1.3196158	0.017930984	1.3180964	268.83047	0	3.652893						38	3	2	NaN	NaN	NaN	0.84455	1	4660	4660		2.7852	0	1	1948.6			7561	5409	4346	4440	6006	6006					0.019787182234722422
GGELFASG	8	Unmodified	_GGELFASG_					0	0	0		ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF;nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3464455142	1	737.346446	736.339169	1.6567	0.0012215	-0.77452	-0.00057109	0.88215	0.00065045	737.3467116888474	19.322	0.096119	19.308	19.26	19.356	-0.014141	621	61	1.2495319	0.036026955	1.2480124	254.92636	0	7.3501434						156	5	3	NaN	NaN	NaN	0.62311	1	3768	3768		23.85	0	1	16346			7562	3213	4347	4441	6007	6007					-0.03954697016195041
GGEPPGAKA	9	Unmodified	_GGEPPGAKA_					0	0	0		ENSG00000144119|ENST00000272520|C1QL2	ENSG00000144119|ENST00000272520|C1QL2	ENSG00000144119|ENST00000272520|C1QL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3995437172	1	783.399544	782.392267	1.4497	0.0011357	-6.1906	-0.0048497	-4.7409	-0.003714	783.3945247755311	43.969	0.23957	43.969	43.849	44.088	0	534	58	1.3016734	0.034110665	1.3016734	265.27832	0	6.9516907						214	11	2	NaN	NaN	NaN	0.66196	1	4524	4524		2.4615	0.79115	1	16324			7563	3464	4348	4442	6008	6008					-0.007633192335333661
GGEQVYLF	8	Unmodified	_GGEQVYLF_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4461595588	1	912.44616	911.438883	1.8196	0.0016603	-0.094177	-8.5932E-05	1.7255	0.0015744	912.445739893888	23.995	0.24127	23.982	23.934	24.175	-0.013048	333	85	1.4215236	0.0499295	1.4200041	288.99536	0	10.150635						359	11	3	NaN	NaN	NaN	0.43738	1	6125	6125		34.439	15.32	1	51955			7564	3388	4349	4443	6009	6009					-0.0203787940224629
GGEQVYLF	8	Unmodified						0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.44616	911.438883	1.8305	0.0016702	-0.34614	-0.00031583	1.4844	0.0013544	912.4458483114345	23.995	0.19302	23.995	23.947	24.14	0	333	85	1.4215236	0.0499295	1.4215236	288.99536		10.150635	0.0066403	-0.000106	0.00075972	NaN	34.439	391	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59979			7565	3388	4349	4443							-0.0203787940224629
GGEVKGGGW	9	Unmodified	_GGEVKGGGW_					0	0	0			REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4104427545002	1	846.410443	845.403166	1.4176	0.0011999	3.8563	0.003264	5.274	0.0044639	846.4135186798854	32.418	0.1689	32.418	32.37	32.539	0	489	55	1.3285799	0.032261968	1.3285799	270.4136	0	6.5664673						245	8	3	NaN	NaN	NaN	0.18779	1	5329	5329		26.115	2.7805	1	40340	+		7566	11500	4350	4444	6010	6010					-0.02571916859221801
GGEVKGGGW	9	Unmodified						0	0	0			REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	846.410443	845.403166	1.4176	0.0011999	3.8563	0.003264	5.274	0.0044639	846.4135186798854	32.418	0.1689	32.418	32.37	32.539	0	489	55	1.3285799	0.032261968	1.3285799	270.4136		6.5664673	0.0021038	-0.00013525	-0.0001364	NaN	26.115	245	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40340	+		7567	11500	4350	4444							-0.02571916859221801
GGEVKGGGW	9	Unmodified						0	0	0			REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	REV__ENST00000245908.10_1_19:6763816-6767563:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	846.410443	845.403166	0.62699	0.00053069	4.2254	0.0035764	4.8524	0.0041071	846.4139795776165	32.417	0.28959	32.414	32.365	32.655	-0.0031052	486	55	1.3303722	0.032261968	1.3288528	270.77838		6.5664673	-0.0021038	0.00017713	0.0001364	NaN	26.115	323	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45836	+		7568	11500	4350	4444							-0.02571916859221801
GGFAGLEF	8	Unmodified	_GGFAGLEF_					0	0	0		ENST00000485897.5_1_20:62371738-62373703:+|nuORF;ENSG00000125520|ENST00000266077|SLC2A4RG	ENST00000485897.5_1_20:62371738-62373703:+|nuORF	ENST00000485897.5_1_20:62371738-62373703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.19505374355	2	399.195054	796.375555	1.0341	0.0004128	-0.01722	-6.874E-06	1.0169	0.00040592	399.19501814891527	29.376	0.12064	29.368	29.32	29.441	-0.0077229	1350	52	0.80618626	0.031425714	0.8046668	328.4916	0	12.80484						125	6	2	NaN	NaN	NaN	0.84876	1	4613	4613		0.39566	0	1	13774			7569	2461	4351	4445	6011	6011					-0.030778201194834764
GGFAGVLA	8	Unmodified	_GGFAGVLA_					0	0	0			REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF	REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	346.1923140893499	2	346.192314	690.370075	1.3811	0.00047813	-4.1708	-0.0014439	-2.7896	-0.00096575	346.19092586237394	26.94	0.16889	26.94	26.891	27.06	0	1467	46	0.7339432	0.027846098	0.7339432	299.83023	0	11.375671						140	8	3	NaN	NaN	NaN	0.84651	1	3046	3046		1.6704	0	1	16367	+		7570	11663	4352	4446	6012	6012					0.012505010886911805
GGFAGVLA	8	Unmodified						0	0	0			REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF	REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	346.192314	690.370075	1.3811	0.00047813	-4.1708	-0.0014439	-2.7896	-0.00096575	346.19092586237394	26.94	0.16889	26.94	26.891	27.06	0	1467	46	0.7339432	0.027846098	0.7339432	299.83023		11.375671	-0.042812	7.9253E-05	0.00075972	NaN	1.6704	140	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16367	+		7571	11663	4352	4446							0.012505010886911805
GGFFTVRYW	9	Unmodified	_GGFFTVRYW_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7823589046501	2	566.782359	1131.55016	0.93471	0.00052978	-10.668	-0.0060467	-9.7337	-0.0055169	567.2776872418315	27.759	0.096521	27.75	27.702	27.798	-0.009552	1218	55	0.8873258	0.033114612	0.8858064	359.73657	0	13.425171						109	5	2	NaN	NaN	NaN	0.51576	1	13691	13691		8.962	1.9776	1	23623	+		7572	10256	4353	4447	6013	6013					-0.01034819974279344
GGFGALLD	8	Unmodified	_GGFGALLD_					0	0	0			REV__nc|ENSG00000065609|O60641-4|SNAP91	REV__nc|ENSG00000065609|O60641-4|SNAP91	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3828310205	1	749.382831	748.375555	1.596	0.001196	-10.808	-0.0080994	-9.212	-0.0069034	749.3753177642806	24.333	0.072432	24.32	24.272	24.344	-0.012749	567	97	1.2819146	0.057550907	1.2803952	261.45618	0	11.737946						202	4	4	NaN	NaN	NaN	0.78605	1	3945	3945		11.091	0	1	56612	+		7573	8540	4354	4448	6014	6014					-0.008698201194761168
GGFGALLD	8	Unmodified						0	0	0			REV__nc|ENSG00000065609|O60641-4|SNAP91	REV__nc|ENSG00000065609|O60641-4|SNAP91	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	749.382831	748.375555	1.596	0.001196	-10.808	-0.0080994	-9.212	-0.0069034	749.3753177642806	24.333	0.072432	24.32	24.272	24.344	-0.012749	567	97	1.2819146	0.057550907	1.2803952	261.45618		11.737946	-0.0065083	0.0003331	-0.00075972	NaN	11.091	202	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56612	+		7574	8540	4354	4448							-0.008698201194761168
GGFRSAAG	8	Unmodified	_GGFRSAAG_					0	0	0		ENST00000379942.4_1_X:19002209-19002593:-|nuORF	ENST00000379942.4_1_X:19002209-19002593:-|nuORF	ENST00000379942.4_1_X:19002209-19002593:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3580132535001	1	722.358013	721.350737	0.99952	0.00072201	-6.5788	-0.0047523	-5.5793	-0.0040302	722.3532006419435	29.762	0.28955	29.755	29.635	29.924	-0.0070667	714	64	1.1936152	0.037935734	1.1920958	243.61089	0	7.7424927						340	13	3	NaN	NaN	NaN	0.84455	1	3534	3534		2.7852	0.32367	1	37677			7575	6727	4355	4449	6015	6015					-0.021084552021875425
GGFSLVLGTM	10	Unmodified	_GGFSLVLGTM_					0	0	0		ENST00000532101.5_1_11:126139101-126141191:+|nuORF	ENST00000532101.5_1_11:126139101-126141191:+|nuORF	ENST00000532101.5_1_11:126139101-126141191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.25732803685	2	491.257328	980.500103	0.9272	0.0004555	-4.5268	-0.0022238	-3.5996	-0.0017683	491.2545277331164	21.344	0.16836	21.33	21.306	21.475	-0.014006	1320	58	0.824661	0.035084903	0.8231416	334.9504	0	14.250336						213	8	3	NaN	NaN	NaN	0.67523	1	7731	7731		9.746	1.4557	1	28731			7576	7453	4356	4450	6016	6016					0.009073093055462778
GGFVYPGE	8	Unmodified	_GGFVYPGE_					0	0	0		ENST00000280098.8_1_2:139259439-139259493:+|nuORF	ENST00000280098.8_1_2:139259439-139259493:+|nuORF	ENST00000280098.8_1_2:139259439-139259493:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	825.3777456426001	1	825.377746	824.370469	1.5987	0.0013195	7.5975	0.0062708	9.1962	0.0075903	825.3840220343943	20.573	0.14443	20.573	20.525	20.67	0	519	49	1.310647	0.028701782	1.310647	266.87247	0	5.844208						114	7	2	NaN	NaN	NaN	0.82332	1	5085	5085		6.0903	1.1806	1	10311			7577	6360	4357	4451	6017	6017					-0.04874123982085621
GGFYHSPIFY	10	Unmodified	_GGFYHSPIFY_					0	0	0			REV__nc|ENSG00000146414|Q149N8-5|SHPRH	REV__nc|ENSG00000146414|Q149N8-5|SHPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2796490402001	2	594.279649	1186.54475	1.2567	0.00074684	6.3082	0.0037488	7.5649	0.0044956	594.2830766057647	32.635	0.38608	32.635	32.466	32.852	0	1200	88	0.89836043	0.053302348	0.89836043	364.00684	0	21.597565						644	17	4	NaN	NaN	NaN	0.40641	1	16050	16050		23.334	4.1708	1	139540	+		7578	9943	4358	4452	6018	6018					-0.04106543556758879
GGGAFGAG	8	Unmodified	_GGGAFGAG_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2678012627001	1	593.267801	592.260525	1.2913	0.00076609	5.2712	0.0031272	6.5625	0.0038933	593.2711079471491	30.318	0.096533	30.318	30.294	30.391	0	1272	46	0.854179	0.027644694	0.854179	175.04025	0	5.665024						92	5	2	NaN	NaN	NaN	0.84945	1	565	565		0	0	1	9008.8			7579	4548	4359	4453	6019	6019					-0.05191504530614566
GGGAFKAA	8	Unmodified	_GGGAFKAA_					0	0	0			REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.356950621	1	678.356951	677.349674	1.5152	0.0010278	-6.2514	-0.0042407	-4.7362	-0.0032128	678.3524098589221	56.804	0.096203	56.804	56.78	56.876	0	552	67	1.2908988	0.039532423	1.2908988	263.78476	0	8.078125						151	5	2	NaN	NaN	NaN	0.84887	1	2788	2788		0.32989	0	1	14517	+		7580	12247	4360	4454	6020	6020					-0.0019066957109998839
GGGAGLHN	8	Unmodified	_GGGAGLHN_					0	0	0			REV__nc|ENSG00000205560|Q92523-4|CPT1B	REV__nc|ENSG00000205560|Q92523-4|CPT1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.3267131251	1	682.326713	681.319437	2.9285	0.0019982	-10.948	-0.0074701	-8.0194	-0.0054719	682.3170672086292	24.381	0.072412	24.368	24.344	24.417	-0.012749	1062	28	0.9827221	0.016461968	0.98120266	200.7882	0	3.3634796						28	4	2	NaN	NaN	NaN	0.84876	1	2779	2779		0.39566	0	1	1655	+		7581	11265	4361	4455	6021	6021					-0.03397028236292954
GGGAGVHE	8	Unmodified	_GGGAGVHE_					0	0	0			REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15900258824996	2	342.159003	682.303452	1.5986	0.00054697	-7.1364	-0.0024418	-5.5378	-0.0018948	342.1564353429196	33.118	0.024113	33.118	33.118	33.142	0	1500	28	0.71351165	0.016729414	0.71351165	291.55035	0	6.8358765						30	2	2	NaN	NaN	NaN	0.84876	1	2883	2883		0.39566	0	1	1554.6	+		7582	12396	4362	4456	6022	6022					-0.05040734473197972
GGGAKACP	8	Unmodified	_GGGAKACP_					0	0	0			REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.3133712468	1	660.313371	659.306095	1.0802	0.0007133	-0.91422	-0.00060367	0.16602	0.00010963	660.3124302079481	24.406	0.12062	24.406	24.381	24.502	0	1119	82	0.9479278	0.04947126	0.9479278	193.80632	0	10.114517						116	6	2	NaN	NaN	NaN	0.84876	1	2282	2282		0.39566	0	1	11773	+		7583	12458	4363	4457	6023	6023					-0.037186023398930956
GGGAPLSL	8	Unmodified	_GGGAPLSL_					0	0	0		ENST00000479366.1_1_X:153626623-153626884:+|nuORF	ENST00000479366.1_1_X:153626623-153626884:+|nuORF	ENST00000479366.1_1_X:153626623-153626884:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3722663341999	1	671.372266	670.36499	1.6651	0.0011179	-1.4172	-0.00095146	0.24787	0.00016641	671.3713618668799	19.852	0.12022	19.852	19.828	19.948	0	711	58	1.1954219	0.03433013	1.1954219	244.3252	0	7.016556						134	6	2	NaN	NaN	NaN	0.66957	1	2609	2609		20.952	1.6678	1	9300.5			7584	7194	4364	4458	6024	6024					0.01662197226085027
GGGASTGK	8	Unmodified	_GGGASTGK_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3154797368001	1	634.31548	633.308203	1.6787	0.0010648	-4.1835	-0.0026537	-2.5048	-0.0015889	634.3131596835196	22.982	0.24096	22.969	22.872	23.113	-0.01354	1134	76	0.9387595	0.04585117	0.93724006	192.09186	0	9.382202						282	11	2	NaN	NaN	NaN	0.84876	1	1480	1480		0.39566	0	1	49601	+		7585	8677	4365	4459	6025	6025					-0.02311850330420384
GGGCFIFI	8	Unmodified	_GGGCFIFI_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.3963725947	1	813.396373	812.389096	1.7455	0.0014198	7.8618	0.0063948	9.6073	0.0078145	813.4031649373682	27.157	0.072397	27.157	27.133	27.205	0	438	49	1.359022	0.028628469	1.359022	276.7894	0	5.8306885						90	4	2	NaN	NaN	NaN	0.81214	1	4918	4918		7.5902	3.1771	1	6837.5			7586	5065	4366	4460	6026	6026					-0.02460285611891777
GGGCFIFI	8	Unmodified	_GGGCFIFI_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.3963725947	1	813.396373	812.389096	1.596	0.0012982	8.1709	0.0066462	9.767	0.0079444	813.4028249152244	27.18	0.096554	27.17	27.146	27.242	-0.010124	438	52	1.359022	0.030412912	1.3575026	276.7894	0	6.1941223						91	5	2	NaN	NaN	NaN	0.83849	1	4816	4816		4.0537	0.48046	1	6494.8			7587	5065	4366	4460	6027	6027					-0.02460285611891777
GGGDEMIPIFY	11	Unmodified	_GGGDEMIPIFY_					0	0	0			REV__BCAN|p.S407F|1|0.1|ENSG00000132692|chr1:156651612-156651612|C/T|missense_variant	REV__BCAN|p.S407F|1|0.1|ENSG00000132692|chr1:156651612-156651612|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.776081896	2	599.776082	1197.53761	1.206	0.00072332	-5.8354	-0.0034999	-4.6294	-0.0027766	599.7726381260071	30.391	0.072409	30.391	30.366	30.439	0	1185	67	0.90755045	0.040442765	0.90755045	367.6918	0	16.385284						178	4	3	NaN	NaN	NaN	0.57804	1	16380	16380		15.463	3.414	1	18948	+		7588	8160	4367	4461	6028	6028					-0.0532564421951065
GGGDEMIPIFY	11	Unmodified						0	0	0			REV__BCAN|p.S407F|1|0.1|ENSG00000132692|chr1:156651612-156651612|C/T|missense_variant	REV__BCAN|p.S407F|1|0.1|ENSG00000132692|chr1:156651612-156651612|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.776082	1197.53761	1.206	0.00072332	-5.8354	-0.0034999	-4.6294	-0.0027766	599.7726381260071	30.391	0.072409	30.391	30.366	30.439	0	1185	67	0.90755045	0.040442765	0.90755045	367.6918		16.385284	-0.056954	0.00051456	-0.0038328	NaN	15.463	178	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18948	+		7589	8160	4367	4461							-0.0532564421951065
GGGDMAVV	8	Unmodified	_GGGDMAVV_					0	0	0		ENSG00000182134|ENST00000368824|TDRKH;nc|ENSG00000182134|Q9Y2W6-3|TDRKH;ENST00000484421.5_1_1:151751155-151751593:-|nuORF	ENSG00000182134|ENST00000368824|TDRKH	ENSG00000182134|ENST00000368824|TDRKH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3236015821001	1	705.323602	704.316325	1.2393	0.00087414	8.2811	0.0058409	9.5205	0.006715	705.3303393409593	55.196	0.24046	55.196	55.124	55.364	0	642	88	1.2369217	0.05225873	1.2369217	252.56322	0	10.6705475						212	11	2	NaN	NaN	NaN	0.84651	1	3292	3292		1.6704	0.42852	1	13445			7590	5251	4368	4462	6029	6029					-0.0476603940530822
GGGDNGEA	8	Unmodified	_GGGDNGEA_					0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.2532734105	1	676.253273	675.245997	1.8045	0.0012203	-10.895	-0.007368	-9.0908	-0.0061477	676.2449805408211	26.046	0.096544	26.035	25.938	26.035	-0.011135	762	103	1.1646824	0.06153512	1.163163	238.00816	0	12.574982						182	5	2	NaN	NaN	NaN	0.84887	1	2643	2643		0.32989	0	1	18958	+		7591	8739	4369	4463	6030	6030					-0.10461621469414695
GGGDNGEA	8	Unmodified						0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	676.253273	675.245997	1.7408	0.0011772	-17.287	-0.011691	-15.547	-0.010513	676.2430051618832	26.312	0.072386	26.312	26.312	26.384	0	774	67	1.1574414	0.039833784	1.1574414	236.52847		8.140228	0.13842	-0.00308	-0.0028608	NaN	0.32989	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5269.7	+		7592	8739	4369	4463							-0.10461621469414695
GGGDNGEA	8	Unmodified						0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	676.253273	675.245997	1.8045	0.0012203	-10.895	-0.007368	-9.0908	-0.0061477	676.2449805408211	26.046	0.096544	26.035	25.938	26.035	-0.011135	762	103	1.1646824	0.06153512	1.163163	238.00816		12.574982	-0.13842	0.0012426	0.0028608	NaN	0.32989	182	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18958	+		7593	8739	4369	4463							-0.10461621469414695
GGGEPLGF	8	Unmodified	_GGGEPLGF_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3515308921002	1	733.351531	732.344254	1.4908	0.0010933	5.8236	0.0042707	7.3144	0.005364	733.355447594127	29.715	0.16893	29.715	29.667	29.836	0	624	64	1.247731	0.037830353	1.247731	254.5843	0	7.7188263						247	8	3	NaN	NaN	NaN	0.76633	1	3789	3789		13.737	3.6855	1	32745			7594	3836	4370	4464	6031	6031					-0.03262393153556786
GGGEPLGF	8	Unmodified						0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	733.351531	732.344254	1.155	0.00084703	6.4933	0.0047619	7.6483	0.0056089	733.3559621857478	29.714	0.21712	29.707	29.659	29.876	-0.0070648	621	73	1.2495319	0.043218493	1.2480124	254.95174		8.818222	-0.0039755	0.00031249	0.00014072	NaN	13.737	277	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36676			7595	3836	4370	4464							-0.03262393153556786
GGGGAGFD	8	Unmodified	_GGGGAGFD_					0	0	0		ENST00000395785.6_2_8:110552009-110563079:+|nuORF	ENST00000395785.6_2_8:110552009-110563079:+|nuORF	ENST00000395785.6_2_8:110552009-110563079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.2576305069	1	637.257631	636.250354	2.0312	0.0012944	-10.464	-0.0066682	-8.4326	-0.0053737	637.2510772533625	55.1	0.048244	55.1	55.1	55.148	0	705	34	1.1990347	0.01986897	1.1990347	245.32623	0	4.0652466						46	3	2	NaN	NaN	NaN	0.84945	1	1631	1631		0	0	1	2662.3			7596	6789	4371	4465	6032	6032					-0.08232112255859647
GGGGAGRH	8	Unmodified	_GGGGAGRH_					0	0	0			REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.6647864579	2	334.664786	667.31502	1.2357	0.00041353	-0.25597	-8.5665E-05	0.97969	0.00032787	334.66557862318064	50.437	0.095856	50.439	50.343	50.439	0.0011024	1527	25	0.69677675	0.014884353	0.6952573	284.83755	0	6.0846252						41	5	2	NaN	NaN	NaN	0.84876	1	2420	2420		0.39566	0	1	1896.1	+		7597	11515	4372	4466	6033	6033					-0.03194492659201842
GGGGAGRH	8	Unmodified	_GGGGAGRH_					0	0	0			REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.6647864579	2	334.664786	667.31502	1.6655	0.00055738	4.0326	0.0013496	5.6981	0.0019069	334.66618916471896	41.063	0.33702	41.07	41.022	41.359	0.0074959	1536	76	0.69119483	0.046511114	0.6896754	282.55566	0	19.013428						589	15	3	NaN	NaN	NaN	0.84876	1	2436	2436		0.39566	0	1	315040	+		7598	11515	4372	4466	6034	6034					-0.03194492659201842
GGGGAGRH	8	Unmodified						0	0	0			REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	REV__ENST00000570731.5_1_17:1666139-1673249:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	334.664786	667.31502	1.6655	0.00055738	4.0326	0.0013496	5.6981	0.0019069	334.66618916471896	41.063	0.33702	41.07	41.022	41.359	0.0074959	1536	76	0.69119483	0.046511114	0.6896754	282.55566		19.013428	-0.15349	-2.4799E-05	0.00017081	NaN	0.39566	589	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315040	+		7599	11515	4372	4466							-0.03194492659201842
GGGGAKGF	8	Unmodified	_GGGGAKGF_					0	0	0			REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3256504926	1	650.32565	649.318374	1.1471	0.00074598	-4.7978	-0.0031202	-3.6508	-0.0023742	650.3228090929115	35.844	0.14465	35.844	35.795	35.94	0	786	46	1.1501974	0.027169585	1.1501974	235.23436	0	5.5566406						108	7	2	NaN	NaN	NaN	0.84945	1	2044	2044		0	0	1	10526	+		7600	11974	4373	4467	6035	6035					-0.02031242605198713
GGGGAKGF	8	Unmodified	_GGGGAKGF_					0	0	0			REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3256504926	1	650.32565	649.318374	0.83811	0.00054504	-4.1561	-0.0027028	-3.318	-0.0021578	650.3227374159454	35.842	0.12048	35.843	35.794	35.915	0.00053024	783	55	1.1520087	0.032601833	1.1504892	235.6048	0	6.667618						148	6	3	NaN	NaN	NaN	0.84945	1	1953	1953		0	0	1	12024	+		7601	11974	4373	4467	6036	6036					-0.02031242605198713
GGGGAKGF	8	Unmodified						0	0	0			REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	650.32565	649.318374	1.1471	0.00074598	-4.7978	-0.0031202	-3.6508	-0.0023742	650.3228090929115	35.844	0.14465	35.844	35.795	35.94	0	786	46	1.1501974	0.027169585	1.1501974	235.23436		5.5566406	0.00053533	-0.00026666	-0.00014594	NaN	0	108	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10526	+		7602	11974	4373	4467							-0.02031242605198713
GGGGAKGF	8	Unmodified						0	0	0			REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	REV__ENST00000389341.9_1_19:42593568-42593751:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	650.32565	649.318374	0.83811	0.00054504	-4.1561	-0.0027028	-3.318	-0.0021578	650.3227374159454	35.842	0.12048	35.843	35.794	35.915	0.00053024	783	55	1.1520087	0.032601833	1.1504892	235.6048		6.667618	-0.00053533	0.00015066	0.00014594	NaN	0	148	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12024	+		7603	11974	4373	4467							-0.02031242605198713
GGGGAKKK	8	Unmodified	_GGGGAKKK_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.4256988882	1	702.425699	701.418422	0.78617	0.00055222	-4.5291	-0.0031813	-3.7429	-0.0026291	702.422700310103	31.089	0.096546	31.084	31.06	31.157	-0.0050716	579	58	1.2747238	0.034165382	1.2732043	260.3025	0	6.9766846						132	5	3	NaN	NaN	NaN	0.84876	1	3187	3187		0.39566	0	1	14398	+		7604	8969	4374	4468	6037	6037					0.055769947286080424
GGGGAKKK	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	702.425699	701.418422	0.39358	0.00027646	-5.0628	-0.0035562	-4.6692	-0.0032797	702.4222646693971	31.115	0.12066	31.115	31.066	31.187	0	579	58	1.2747238	0.034165382	1.2747238	260.3025		6.9766846	0.015112	-0.00017544	0.00075972	NaN	0.39566	129	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11514	+		7605	8969	4374	4468							0.055769947286080424
GGGGAKKK	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	702.425699	701.418422	0.78617	0.00055222	-4.5291	-0.0031813	-3.7429	-0.0026291	702.422700310103	31.089	0.096546	31.084	31.06	31.157	-0.0050716	579	58	1.2747238	0.034165382	1.2732043	260.3025		6.9766846	-0.015112	0.00019944	-0.00075972	NaN	0.39566	132	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14398	+		7606	8969	4374	4468							0.055769947286080424
GGGGAVLA	8	Unmodified	_GGGGAVLA_					0	0	0		ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	301.1688389930499	2	301.168839	600.323125	1.3878	0.00041797	-8.0009	-0.0024096	-6.613	-0.0019916	301.1664368771179	35.07	0.16891	35.07	34.998	35.167	-4.5776E-05	1545	100	0.68561107	0.061387956	0.6840916	280.89856	0	25.151001						242	8	2	NaN	NaN	NaN	0.84876	1	597	597		0.39566	0	1	19024			7607	7553	4375	4469	6038	6038					0.006976415375561373
GGGGAVLA	8	Unmodified						0	0	0		ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	301.168839	600.323125	0.96025	0.0002892	-10.007	-0.0030137	-9.0463	-0.0027245	301.16586018836125	35.048	0.14479	35.048	34.999	35.144	0	1548	94	0.6837494	0.05768007	0.6837494	280.13583		23.631805	-0.01133	-0.00058405	-0.00017111	NaN	0.39566	251	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19001			7608	7553	4375	4469							0.006976415375561373
GGGGAVSG	8	Unmodified	_GGGGAVSG_					0	0	0			REV__ENST00000228705.6_1_12:63328663-63328753:-|nuORF	REV__ENST00000228705.6_1_12:63328663-63328753:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2627158848001	1	561.262716	560.255439	1.5461	0.00086779	5.8574	0.0032875	7.4035	0.0041553	561.2642847064557	21.537	0.12053	21.523	21.426	21.547	-0.014004	1209	70	0.892844	0.042324543	0.8913246	183.19862	0	8.684372						157	6	2	NaN	NaN	NaN	0.84876	1	457	457		0.39566	0	1	12797	+		7609	11477	4376	4470	6039	6039					-0.042278083932387744
GGGGCALP	8	Unmodified	_GGGGCALP_					0	0	0		nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1	nc|ENSG00000184937|P19544-2|WT1	nc|ENSG00000184937|P19544-2|WT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.14704930595	2	316.147049	630.279546	1.347	0.00042585	-1.6933	-0.00053532	-0.34626	-0.00010947	316.1469163626745	35.048	0.19303	35.048	34.975	35.168	0	1488	130	0.7209441	0.0799644	0.7209441	295.06354	0	32.727325						858	9	4	NaN	NaN	NaN	0.84651	1	1455	1455		1.6704	0.2308	1	255660			7610	5379	4377	4471	6040	6040					-0.050382912312102235
GGGGCCCC	8	Unmodified	_GGGGCCCC_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.1404339585	1	659.140434	658.133157	1.4993	0.00098822	-6.1691	-0.0040663	-4.6699	-0.0030781	659.1363058055987	49.744	0.21552	49.744	49.624	49.84	0	780	40	1.1538198	0.023541927	1.1538198	235.91003	0	4.8134003						108	10	2	NaN	NaN	NaN	0.84945	1	2234	2234		0	0	1	6688.2	+		7611	9737	4378	4472	6041	6041					-0.20958376054625205
GGGGCLLG	8	Unmodified	_GGGGCLLG_					0	0	0		ENST00000460723.5_1_22:32015600-32017569:-|nuORF;ENST00000474017.5_1_22:32017296-32017569:-|nuORF	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805004	2	317.154874	632.295196	0.99305	0.00031495	-0.22151	-7.0253E-05	0.77154	0.0002447	317.15487841983645	40.44	0.04805	40.44	40.392	40.44	0	1536	97	0.69119483	0.0595181	0.69119483	282.86884	0	24.357544						135	3	2	NaN	NaN	NaN	0.84876	1	1523	1523		0.39566	0	1	21322			7612	7076	4379	4473	6042	6042					-0.035660047141618634
GGGGFARA	8	Unmodified	_GGGGFARA_					0	0	0			REV__ENST00000370551.8_1_1:87380463-87380508:+|nuORF	REV__ENST00000370551.8_1_1:87380463-87380508:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3474485672	1	692.347449	691.340172	1.8545	0.0012839	-1.7522	-0.0012131	0.10233	7.0848E-05	692.3463465617024	57.237	0.024025	57.237	57.237	57.261	0	525	58	1.3070582	0.03410697	1.3070582	266.97974	0	6.9667053						46	2	2	NaN	NaN	NaN	0.84727	1	3052	3052		1.2418	0.91196	1	3131.3	+		7613	11887	4380	4474	6043	6043					-0.017844378566337582
GGGGFGRG	8	Unmodified	_GGGGFGRG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.3161484388	1	664.316148	663.308872	1.7117	0.0011371	-2.0955	-0.0013921	-0.38379	-0.00025496	664.3167208153963	55.364	0.16799	55.364	55.292	55.46	0	579	70	1.2747238	0.041349173	1.2747238	260.58865	0	8.452942						186	8	2	NaN	NaN	NaN	0.84692	1	2410	2410		1.4396	0	1	14576	+	+	7614	8282	4381	4475	6044	6044					-0.03625010890721114
GGGGGAHV	8	Unmodified	_GGGGGAHV_					0	0	0			REV__ENST00000466835.5_1_2:74685568-74686813:+|nuORF	REV__ENST00000466835.5_1_2:74685568-74686813:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.2895993373	1	611.289599	610.282323	1.2585	0.00076933	-1.5268	-0.00093333	-0.26828	-0.000164	611.2889897168166	46.653	0.31149	46.653	46.557	46.869	0	732	88	1.1827712	0.05245483	1.1827712	242.21498	0	10.74202						461	14	3	NaN	NaN	NaN	0.84651	1	807	807		1.6704	1.2747	1	75959	+		7615	12307	4382	4476	6045	6045					-0.03840699782051615
GGGGGAHV	8	Unmodified						0	0	0			REV__ENST00000466835.5_1_2:74685568-74686813:+|nuORF	REV__ENST00000466835.5_1_2:74685568-74686813:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	611.289599	610.282323	1.2585	0.00076933	-1.5268	-0.00093333	-0.26828	-0.000164	611.2889897168166	46.653	0.31149	46.653	46.557	46.869	0	732	88	1.1827712	0.05245483	1.1827712	242.21498		10.74202	-0.0041616	-0.00056027	0.00075972	NaN	1.6704	461	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75959	+		7616	12307	4382	4476							-0.03840699782051615
GGGGGAIA	8	Unmodified	_GGGGGAIA_					0	0	0			REV__ENST00000478953.1_1_10:99379422-99393256:-|nuORF	REV__ENST00000478953.1_1_10:99379422-99393256:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2834513269	1	559.283451	558.276175	1.2672	0.00070873	5.3151	0.0029726	6.5823	0.0036814	559.2870621898317	12.102	0.095984	12.094	12.094	12.19	-0.0081863	1236	55	0.876284	0.033139646	0.8747646	179.81589	0	6.800354						97	5	2	NaN	NaN	NaN	0.84651	1	453	453		1.6704	0	1	10730	+		7617	12364	4383	4477	6046	6046					-0.020632180135748968
GGGGGATY	8	Unmodified	_GGGGGATY_					0	0	0		ENSG00000171094|ENST00000389048|ALK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.2732805711	1	639.273281	638.266004	1.6248	0.0010387	6.1232	0.0039144	7.748	0.0049531	639.277134400328	34.901	0.14468	34.901	34.853	34.998	-4.5776E-05	1269	37	0.8560222	0.022117019	0.85450274	175.13313	0	4.5249023						120	7	2	NaN	NaN	NaN	0.84887	1	1602	1602		0.32989	0.32989	1	17406			7618	4764	4384	4478	6047	6047					-0.06759825738811287
GGGGGATY	8	Unmodified						0	0	0		ENSG00000171094|ENST00000389048|ALK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	639.273281	638.266004	1.231	0.00078693	3.8748	0.0024771	5.1058	0.003264	639.275817807332	34.903	0.16871	34.903	34.855	35.023	0	1272	40	0.854179	0.023961365	0.854179	174.75604		4.902237	0.00078758	-0.00065091	-0.00016187	NaN	0.32989	133	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18533			7619	4764	4384	4478							-0.06759825738811287
GGGGGGKK	8	Unmodified	_GGGGGGKK_					0	0	0		nc|ENSG00000292354|O15266-2|SHOX;ENSG00000185960|ENST00000686671|SHOX;nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B	nc|ENSG00000292354|O15266-2|SHOX	nc|ENSG00000292354|O15266-2|SHOX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3365495299	1	617.33655	616.329273	0.24378	0.0001505	3.9752	0.0024541	4.219	0.0026045	617.3406881885562	38.251	0.19222	38.251	38.179	38.372	0	849	73	1.1121149	0.043557763	1.1121149	227.69667	0	8.918106						233	9	3	NaN	NaN	NaN	0.84876	1	1051	1051		0.39566	0.39566	1	15255			7620	5446	4385	4479	6048	6048					0.00576159769093465
GGGGGGKL	8	Unmodified	_GGGGGGKL_					0	0	0			REV__ENSG00000126247|ENST00000246533|CAPNS1;REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF;REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3256504926	1	602.32565	601.318374	-0.6769	-0.00040771	-4.1812	-0.0025185	-4.8581	-0.0029262	602.3224796169801	55.05	0.12	55.049	55.001	55.121	-0.0006218	702	52	1.2008407	0.030709863	1.1993213	245.99554	0	6.2910156						101	6	2	NaN	NaN	NaN	0.84692	1	606	606		1.4396	0	1	9168.9	+		7621	11895;9414;11750	4386	4480	6049	6049					0.0017675739479727781
GGGGGGPF	8	Unmodified	_GGGGGGPF_					0	0	0			REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2678012627	1	605.267801	604.260525	1.3331	0.00080689	-11.007	-0.0066621	-9.6737	-0.0058552	605.261230476875	25.25	0.19298	25.238	25.189	25.382	-0.012011	795	73	1.1447623	0.043506384	1.1432428	234.48242	0	8.911453						326	9	3	NaN	NaN	NaN	0.84876	1	658	658		0.39566	0	1	50638	+		7622	12711	4387	4481	6050	6050					-0.05743504530619248
GGGGGGPF	8	Unmodified						0	0	0			REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	605.267801	604.260525	1.6333	0.0009886	-11.805	-0.007145	-10.171	-0.0061564	605.2606230168255	25.25	0.26543	25.25	25.178	25.443	0	798	91	1.1429502	0.054400444	1.1429502	234.11127		11.142899	0.0061121	-0.00019674	-0.00014632	NaN	0.39566	395	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58560	+		7623	12711	4387	4481							-0.05743504530619248
GGGGGGPF	8	Unmodified						0	0	0			REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	REV__ENST00000545147.5_1_12:31613303-31743898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	605.267801	604.260525	1.3331	0.00080689	-11.007	-0.0066621	-9.6737	-0.0058552	605.261230476875	25.25	0.19298	25.238	25.189	25.382	-0.012011	795	73	1.1447623	0.043506384	1.1432428	234.48242		8.911453	-0.0061121	0.00028618	0.00014632	NaN	0.39566	326	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50638	+		7624	12711	4387	4481							-0.05743504530619248
GGGGGGWA	8	Unmodified	_GGGGGGWA_					0	0	0		ENST00000307741.10_1_19:2785482-2790545:+|nuORF	ENST00000307741.10_1_19:2785482-2790545:+|nuORF	ENST00000307741.10_1_19:2785482-2790545:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.2630502357999	1	618.26305	617.255774	-0.39459	-0.00024396	-4.5483	-0.002812	-4.9429	-0.003056	618.2609761904746	56.755	0.096146	56.754	56.754	56.85	-0.00056458	768	46	1.1610622	0.027160883	1.1595428	237.71056	0	5.560791						82	5	2	NaN	NaN	NaN	0.84945	1	1031	1031		0	0	1	4272.4			7625	6432	4388	4482	6051	6051					-0.06816388673394158
GGGGGGYDG	9	Unmodified	_GGGGGGYDG_					0	0	0		ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000451198.2_1_20:35249346-35249823:+|nuORF	ENST00000451198.2_1_20:35249346-35249823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.2583587884001	1	696.258359	695.251082	0.85851	0.00059774	-6.7159	-0.004676	-5.8574	-0.0040783	696.2538597948476	29.014	0.16895	29.007	28.838	29.007	-0.0077209	1107	46	0.9552588	0.02748698	0.9537394	195.0999	0	5.6138763						116	8	2	NaN	NaN	NaN	0.68801	1	3071	3071		0.23014	0	1	11248			7626	7038	4389	4483	6052	6052					-0.10873317606797173
GGGGGHSR	8	Unmodified	_GGGGGHSR_					0	0	0		ENST00000339560.9_1_19:14049063-14049114:-|nuORF	ENST00000339560.9_1_19:14049063-14049114:-|nuORF	ENST00000339560.9_1_19:14049063-14049114:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.66224376895	2	342.662244	683.309935	1.4629	0.0005013	1.238	0.0004242	2.7009	0.0009255	342.6635698477801	29.062	0.19308	29.055	29.007	29.2	-0.0077209	1521	64	0.70049703	0.039048076	0.6989776	286.2241	0	15.955109						312	9	4	NaN	NaN	NaN	0.84897	1	2821	2821		0.27539	0	1	45920			7627	6541	4390	4484	6053	6053					-0.04438796521810673
GGGGGKLF	8	Unmodified	_GGGGGKLF_					0	0	0			REV__ENSG00000126247|ENST00000246533|CAPNS1	REV__ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852	1	692.372601	691.365324	0.72211	0.00049997	8.3911	0.0058098	9.1132	0.0063097	692.3783900195862	38.828	0.28833	38.828	38.732	39.02	0	732	73	1.1827712	0.043394685	1.1827712	241.59267	0	8.86377						277	13	2	NaN	NaN	NaN	0.84692	1	3062	3062		1.4396	1.1097	1	31774	+		7628	9414	4391	4485	6054	6054					0.007296169459436896
GGGGGKLF	8	Unmodified	_GGGGGKLF_					0	0	0			REV__ENSG00000126247|ENST00000246533|CAPNS1	REV__ENSG00000126247|ENST00000246533|CAPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	0.85636	0.00059292	5.5599	0.0038495	6.4163	0.0044424	692.3761162131769	40.438	0.14419	40.445	40.373	40.517	0.0067558	714	61	1.1936152	0.036142826	1.1920958	243.80768	0	7.382538						186	7	3	NaN	NaN	NaN	0.84887	1	2985	2985		0.32989	0	1	23388	+		7629	9414	4391	4485	6055	6055					0.007296169459436896
GGGGGKLVK	9	Unmodified	_GGGGGKLVK_					0	0	0			REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.4675637029001	1	772.467564	771.460287	1.8089	0.0013973	-2.7767	-0.0021449	-0.96786	-0.00074764	772.4650866873384	55.821	0.024033	55.821	55.821	55.845	0	549	55	1.292695	0.032327414	1.292695	263.51288	0	6.5898743						57	2	2	NaN	NaN	NaN	0.68801	1	4376	4376		0.23014	0.23014	1	6253.6	+		7630	11750	4392	4486	6056	6056					0.06541550417136932
GGGGGKLVK	9	Unmodified						0	0	0			REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	772.467564	771.460287	1.8089	0.0013973	-2.7767	-0.0021449	-0.96786	-0.00074764	772.4650866873384	55.821	0.024033	55.821	55.821	55.845	0	549	55	1.292695	0.032327414	1.292695	263.51288		6.5898743	-0.11864	-0.0011247	-0.00013831	NaN	0.23014	57	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6253.6	+		7631	11750	4392	4486							0.06541550417136932
GGGGGKLVK	9	Unmodified						0	0	0			REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	772.467564	771.460287	-0.19588	-0.00015131	-0.14153	-0.00010933	-0.33741	-0.00026064	772.4675608548077	56.059	0.096046	56.058	56.034	56.13	-0.00056458	546	61	1.294491	0.035919428	1.2929716	263.879		7.3220825	0.11864	0.00091088	0.00013831	NaN	0.23014	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15247	+		7632	11750	4392	4486							0.06541550417136932
GGGGGNPV	8	Unmodified	_GGGGGNPV_					0	0	0			REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	307.64827072645	2	307.648271	613.281989	2.2721	0.00069901	6.8547	0.0021088	9.1268	0.0028079	307.65295030318424	51.012	0.047894	51.013	51.013	51.061	0.00057983	1527	22	0.69677675	0.013024509	0.6952573	285.33948	0	5.3337097						24	3	2	NaN	NaN	NaN	0.84876	1	888	888		0.39566	0	1	919.35	+		7633	8193	4393	4487	6057	6057					-0.040121195019082734
GGGGGSPP	8	Unmodified	_GGGGGSPP_					0	0	0		ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	ENST00000418924.6_1_14:93042630-93154594:+|nuORF	ENST00000418924.6_1_14:93042630-93154594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2627158848001	1	585.262716	584.255439	1.6689	0.00097673	7.6957	0.004504	9.3645	0.0054807	585.2675190324367	20.501	0.19246	20.501	20.453	20.646	0	1218	52	0.8873258	0.031276584	0.8873258	181.88882	0	6.4112396						178	9	2	NaN	NaN	NaN	0.84876	1	532	532		0.39566	0	1	35791			7634	1261	4394	4488	6058	6058					-0.0533180839323677
GGGGGVIL	8	Unmodified	_GGGGGVIL_					0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.3617016479001	1	629.361702	628.354425	1.7086	0.0010753	-10.331	-0.0065018	-8.6222	-0.0054265	629.3549372451937	52.787	0.14376	52.787	52.739	52.882	0	693	103	1.2062578	0.061396837	1.2062578	246.8693	0	12.565292						252	7	2	NaN	NaN	NaN	0.84876	1	1374	1374		0.39566	0	1	28507	+		7635	10226	4395	4489	6059	6059					0.025382145716662308
GGGGGVIL	8	Unmodified						0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	629.361702	628.354425	1.7086	0.0010753	-10.331	-0.0065018	-8.6222	-0.0054265	629.3549372451937	52.787	0.14376	52.787	52.739	52.882	0	693	103	1.2062578	0.061396837	1.2062578	246.8693		12.565292	0.0010026	-0.00045339	0.0016625	NaN	0.39566	252	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28507	+		7636	10226	4395	4489							0.025382145716662308
GGGGGVIL	8	Unmodified						0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	629.361702	628.354425	-0.5709	-0.0003593	-8.611	-0.0054194	-9.1819	-0.0057787	629.356733343999	52.785	0.19171	52.785	52.737	52.929	-0.00045776	696	118	1.2044523	0.0704447	1.2029328	246.49977		14.417007	-0.0010026	0.00062898	-0.0016625	NaN	0.39566	225	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18646	+		7637	10226	4395	4489							0.025382145716662308
GGGGGYCC	8	Unmodified	_GGGGGYCC_					0	0	0		ENSG00000168267|ENST00000376504|PTF1A	ENSG00000168267|ENST00000376504|PTF1A	ENSG00000168267|ENST00000376504|PTF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.2068572648	1	673.206857	672.199581	1.1134	0.00074954	-7.0014	-0.0047134	-5.888	-0.0039638	673.2025447940403	22.018	0.072186	22.004	21.98	22.053	-0.013895	684	70	1.2116731	0.041499734	1.2101537	247.63321	0	8.481445						102	4	2	NaN	NaN	NaN	0.84945	1	2565	2565		0	0	1	8153.2			7638	4608	4396	4490	6060	6060					-0.1496310089672761
GGGGGYCC	8	Unmodified						0	0	0		ENSG00000168267|ENST00000376504|PTF1A	ENSG00000168267|ENST00000376504|PTF1A	ENSG00000168267|ENST00000376504|PTF1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	673.206857	672.199581	1.5529	0.0010454	-7.7332	-0.005206	-6.1803	-0.0041606	673.2019136405187	21.874	0.072397	21.874	21.874	21.946	0	684	67	1.2116731	0.039689064	1.2116731	247.63321		8.111374	-0.065249	-0.0002665	0.00075972	NaN	0	100	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6875.2			7639	4608	4396	4490							-0.1496310089672761
GGGGKGHK	8	Unmodified	_GGGGKGHK_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3739976687	1	697.373998	696.366721	1.4044	0.00097941	-3.9756	-0.0027725	-2.5711	-0.001793	697.3713981527836	55.1	0.072285	55.1	55.076	55.148	0	534	64	1.3016734	0.03771341	1.3016734	265.8426	0	7.7022705						60	4	2	NaN	NaN	NaN	0.84945	1	3167	3167		0	0	1	4889.4	+		7640	10118	4397	4491	6061	6061					0.006392510347041025
GGGGKGVW	8	Unmodified	_GGGGKGVW_					0	0	0		ENST00000475826.1_1_6:32121346-32121991:-|nuORF	ENST00000475826.1_1_6:32121346-32121991:-|nuORF	ENST00000475826.1_1_6:32121346-32121991:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.18756306244995	2	359.187563	716.360573	1.6917	0.00060763	1.409	0.00050609	3.1007	0.0011137	359.1880508235804	55.629	0.16822	55.629	55.532	55.701	0	1449	40	0.74507743	0.024114966	0.74507743	304.16455	0	9.844513						118	8	2	NaN	NaN	NaN	0.84887	1	3540	3540		0.32989	0	1	9890.8			7641	7178	4398	4492	6062	6062					-0.00895267196824534
GGGGKLAD	8	Unmodified	_GGGGKLAD_					0	0	0			REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3467798652	1	674.34678	673.339503	0.98809	0.00066631	-6.4504	-0.0043498	-5.4624	-0.0036835	674.3414260676093	32.225	0.14478	32.225	32.177	32.321	0	753	46	1.1701111	0.027131915	1.1701111	239.13097	0	5.544815						86	7	2	NaN	NaN	NaN	0.84692	1	2671	2671		1.4396	1.0439	1	5534.2	+		7642	13235	4399	4493	6063	6063					-0.010232772963377101
GGGGKLAD	8	Unmodified						0	0	0			REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	674.34678	673.339503	0.98809	0.00066631	-6.4504	-0.0043498	-5.4624	-0.0036835	674.3414260676093	32.225	0.14478	32.225	32.177	32.321	0	753	46	1.1701111	0.027131915	1.1701111	239.13097		5.544815	0	0	0	NaN	1.4396	86	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5534.2	+		7643	13235	4399	4493							-0.010232772963377101
GGGGKVCL	8	Unmodified	_GGGGKVCL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.5494	0.0010696	3.5468	0.0024485	5.0962	0.0035182	690.3631739357809	30.56	0.24137	30.56	30.511	30.753	0	735	100	1.1809633	0.059670806	1.1809633	241.23706	0	12.189056						546	11	4	NaN	NaN	NaN	0.84692	1	3017	3017		1.4396	1.0439	1	84241	+		7644	9788	4400	4494	6064	6064					-0.004057427887460108
GGGGKVCL	8	Unmodified	_GGGGKVCL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.5311	0.001057	4.2676	0.0029462	5.7988	0.0040032	690.3632429306124	36.808	0.14431	36.808	36.688	36.832	0	690	109	1.2080631	0.0650363	1.2080631	246.77278	0	13.285049						196	7	2	NaN	NaN	NaN	0.84876	1	3022	3022		0.39566	0	1	20530	+		7645	9788	4400	4494	6065	6065					-0.004057427887460108
GGGGKVCL	8	Unmodified						0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.5494	0.0010696	3.5468	0.0024485	5.0962	0.0035182	690.3631739357809	30.56	0.24137	30.56	30.511	30.753	0	735	100	1.1809633	0.059670806	1.1809633	241.23706		12.189056	0.003385	-0.00032928	-0.00014429	NaN	1.4396	546	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84241	+		7646	9788	4400	4494							-0.004057427887460108
GGGGMLAK	8	Unmodified	_GGGGMLAK_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.0941	0.00075532	3.6825	0.0025423	4.7766	0.0032976	690.3631494962993	31.041	0.16896	31.036	30.964	31.133	-0.0050716	750	100	1.1719203	0.05965805	1.1704009	239.38985	0	12.186447						336	8	2	NaN	NaN	NaN	0.84727	1	2935	2935		1.2418	0	1	32384	+		7647	13209	4401	4495	6066	6066					-0.004057427887460108
GGGGPCGF	8	Unmodified	_GGGGPCGF_					0	0	0		ENSG00000146676|ENST00000395699|PURB;PURB|p.L48Ffs*53|1|0.16|ENSG00000146676|chr7:44885205-44885206|-/A|frameshift_variant	ENSG00000146676|ENST00000395699|PURB	ENSG00000146676|ENST00000395699|PURB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.2555220168999	1	651.255522	650.248246	1.558	0.0010147	-11.096	-0.0072263	-9.5379	-0.0062116	651.2483456713007	53.314	0.19205	53.314	53.242	53.434	0	741	55	1.1773466	0.032545924	1.1773466	240.77975	0	6.656006						149	9	2	NaN	NaN	NaN	0.84945	1	2048	2048		0	0	1	12106			7648	3571	4402	4496	6067	6067					-0.09086864265327677
GGGGPYAA	8	Unmodified	_GGGGPYAA_					0	0	0			REV__ENSG00000185668|ENST00000373012|POU3F1	REV__ENSG00000185668|ENST00000373012|POU3F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2940160131999	1	649.294016	648.28674	1.9305	0.0012534	-8.942	-0.005806	-7.0115	-0.0045525	649.2870191561432	30.463	0.024141	30.463	30.439	30.463	0	1131	40	0.94059354	0.023842633	0.94059354	192.37325	0	4.8763733						31	2	2	NaN	NaN	NaN	0.84945	1	2002	2002		0	0	1	1616.5	+		7649	10969	4403	4497	6068	6068					-0.051472353591520914
GGGGQGGD	8	Unmodified	_GGGGQGGD_					0	0	0		ENST00000566044.5_1_16:47495210-47497806:+|nuORF;ENST00000566037.6_1_16:47495183-47497811:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	ENST00000566044.5_1_16:47495210-47497806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.2321440379	1	604.232144	603.224868	0.19631	0.00011862	-8.9966	-0.005436	-8.8002	-0.0053174	604.2274079173202	43.511	0.47948	43.522	43.378	43.858	0.01099	795	76	1.1447623	0.045311928	1.1432428	234.4913	0	9.281616						528	21	3	NaN	NaN	NaN	0.84782	1	641	641		0.92586	0	1	108360			7650	7623	4404	4498	6069	6069					-0.09261586778291075
GGGGRGAH	8	Unmodified	_GGGGRGAH_					0	0	0		ENST00000519065.5_1_6:114281178-114292295:-|nuORF;ENST00000368632.6_1_6:114281140-114292298:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.6647864579	2	334.664786	667.31502	0.76431	0.00025579	0.91148	0.00030504	1.6758	0.00056083	334.66675452266315	43.343	0.16758	43.354	43.258	43.426	0.01099	1533	46	0.6930556	0.027909696	0.6915362	283.31638	0	11.409271						218	8	4	NaN	NaN	NaN	0.84887	1	2422	2422		0.32989	0	1	21062			7651	6632	4405	4499	6070	6070					-0.03194492659201842
GGGGRGAH	8	Unmodified						0	0	0		ENST00000519065.5_1_6:114281178-114292295:-|nuORF;ENST00000368632.6_1_6:114281140-114292298:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.664786	667.31502	1.3314	0.00044556	1.2	0.00040158	2.5313	0.00084714	334.66709970267345	43.441	0.11995	43.441	43.393	43.513	0	1536	37	0.69119483	0.022328973	0.69119483	282.55566		9.12793	0.043367	0.00011052	-0.0001707	NaN	0.32989	124	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10961			7652	6632	4405	4499							-0.03194492659201842
GGGGRGCV	8	Unmodified	_GGGGRGCV_					0	0	0		ENST00000371711.4_1_20:48251667-48252051:-|nuORF;ENST00000465521.1_1_2:74757592-74758334:+|nuORF	REV__ENSG00000171403|ENST00000246662|KRT9	REV__ENSG00000171403|ENST00000246662|KRT9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.3038691930001	1	662.303869	661.296593	0.84489	0.00055957	3.4004	0.0022521	4.2453	0.0028117	662.3052184662436	38.299	0.048069	38.299	38.275	38.324	0	1098	52	0.960755	0.031148553	0.960755	196.41684	0	6.367996						43	3	2	NaN	NaN	NaN	0.84887	1	2347	2347		0.32989	0	1	2818.8	+	+	7653	8267	4406	4500	6071	6071					-0.04760370625410815
GGGGRGPC	8	Unmodified	_GGGGRGPC_					0	0	0		ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.2882191287999	1	660.288219	659.280943	1.5155	0.0010007	-3.8926	-0.0025703	-2.3771	-0.0015696	660.2858874951761	28.412	0.12067	28.412	28.363	28.484	0	738	52	1.179155	0.03074944	1.179155	241.08153	0	6.286789						125	6	2	NaN	NaN	NaN	0.84887	1	2281	2281		0.32989	0	1	10667			7654	7008	4407	4501	6072	6072					-0.062326571424705435
GGGGSGGKP	9	Unmodified	_GGGGSGGKP_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3263787741	1	673.326379	672.319102	1.1918	0.00080248	-7.3638	-0.0049582	-6.172	-0.0041557	673.3220016870437	22.886	0.16878	22.872	22.824	22.993	-0.01354	717	115	1.1918083	0.06871557	1.1902889	243.57253	0	14.043549						288	8	2	NaN	NaN	NaN	0.6532	1	2568	2568		3.2116	0.42642	1	49048			7655	7814	4408	4502	6073	6073					-0.030164479561449298
GGGGSWLL	8	Unmodified	_GGGGSWLL_					0	0	0			REV__nc|ENSG00000169436|Q8NFW1-3|COL22A1	REV__nc|ENSG00000169436|Q8NFW1-3|COL22A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.3831653715	1	746.383165	745.375889	1.1759	0.00087766	6.0585	0.004522	7.2344	0.0053996	746.3880603861714	35.143	0.16895	35.143	35.119	35.287	-4.5776E-05	543	97	1.296287	0.05750799	1.2947675	264.4066	0	11.730011						215	8	2	NaN	NaN	NaN	0.76633	1	3907	3907		13.737	2.1886	1	17238	+		7656	10552	4409	4503	6074	6074					-0.0069840039963082745
GGGGSWLL	8	Unmodified						0	0	0			REV__nc|ENSG00000169436|Q8NFW1-3|COL22A1	REV__nc|ENSG00000169436|Q8NFW1-3|COL22A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	746.383165	745.375889	1.1759	0.00087766	6.0585	0.004522	7.2344	0.0053996	746.3880603861714	35.143	0.16895	35.143	35.119	35.287	-4.5776E-05	543	97	1.296287	0.05750799	1.2947675	264.4066		11.730011	-0.01283	0.00011383	-0.00075972	NaN	13.737	215	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17238	+		7657	10552	4409	4503							-0.0069840039963082745
GGGGVRLR	8	Unmodified	_GGGGVRLR_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4583960001	1	771.458396	770.45112	-0.2065	-0.00015931	-4.5837	-0.0035361	-4.7902	-0.0036954	771.454149031239	56.539	0.19181	56.538	56.442	56.634	-0.00056458	543	58	1.296287	0.03411436	1.2947675	264.25116	0	6.9542847						196	9	2	NaN	NaN	NaN	0.84692	1	4290	4290		1.4396	0	1	16623			7658	4892	4410	4504	6075	6075					0.056712018514645024
GGGHGGAF	8	Unmodified	_GGGHGGAF_					0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.2895993373	1	659.289599	658.282323	1.9436	0.0012814	-2.6143	-0.0017236	-0.67064	-0.00044215	659.2895676304522	53.314	0.33587	53.314	53.194	53.53	0	789	217	1.1483859	0.13060367	1.1483859	234.79791	0	26.70311						1200	15	6	NaN	NaN	NaN	0.84945	1	2236	2236		0	0	1	303820	+		7659	13029	4411	4505	6076	6076					-0.06048699782047606
GGGHPGKP	8	Unmodified	_GGGHPGKP_					0	0	0		ENST00000584106.1_1_17:37034352-37046744:+|nuORF	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3630986314	1	706.363099	705.355822	0.78263	0.00055282	-6.1862	-0.0043697	-5.4036	-0.0038169	706.3586742615643	31.983	0.21722	31.983	31.911	32.128	0	762	91	1.1646824	0.05425489	1.1646824	237.80627	0	11.077835						358	10	2	NaN	NaN	NaN	0.84876	1	3320	3320		0.39566	0	1	36039			7660	7691	4412	4506	6077	6077					-0.008641513395787115
GGGIHNNT	8	Unmodified	_GGGIHNNT_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3587415349999	1	769.358742	768.351465	-0.11522	-8.8649E-05	-6.4145	-0.004935	-6.5297	-0.0050237	769.3549678913243	55.05	0.071976	55.049	55.001	55.073	-0.0006218	495	67	1.3249949	0.039435506	1.3234755	270.11624	0	8.039429						102	4	3	NaN	NaN	NaN	0.83211	1	4257	4257		4.9097	0.49665	1	10065	+		7661	10694	4413	4507	6078	6078					-0.04197660553154492
GGGIHNNT	8	Unmodified						0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.358742	768.351465	1.7959	0.0013817	-6.9636	-0.0053575	-5.1677	-0.0039758	769.3526902960713	55.052	0.072029	55.052	55.004	55.076	0	504	52	1.3196158	0.030484319	1.3196158	269.01968		6.2145996	0.0011924	-0.00026566	-0.0019298	NaN	4.9097	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5890.2	+		7662	10694	4413	4507							-0.04197660553154492
GGGIHNNT	8	Unmodified						0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	769.358742	768.351465	-0.11522	-8.8649E-05	-6.4145	-0.004935	-6.5297	-0.0050237	769.3549678913243	55.05	0.071976	55.049	55.001	55.073	-0.0006218	495	67	1.3249949	0.039435506	1.3234755	270.11624		8.039429	-0.0011924	0.00015682	0.0019298	NaN	4.9097	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10065	+		7663	10694	4413	4507							-0.04197660553154492
GGGKFGAV	8	Unmodified	_GGGKFGAV_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	1.2481	0.00086413	8.4283	0.0058355	9.6764	0.0066997	692.3784894928106	38.441	0.31248	38.445	38.349	38.662	0.0040245	738	91	1.179155	0.05426073	1.1776356	240.85402	0	11.083282						341	14	2	NaN	NaN	NaN	0.84887	1	3001	3001		0.32989	0	1	25318			7664	1313	4414	4508	6079	6079					0.007296169459436896
GGGKFGAV	8	Unmodified						0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	0.68899	0.00047704	9.616	0.0066578	10.305	0.0071349	692.3798052037015	38.684	0.072071	38.684	38.636	38.708	0	738	55	1.179155	0.032545924	1.179155	240.85402		6.6478424	0.11929	0.00055148	0.00075972	NaN	0.32989	84	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5810.9			7665	1313	4414	4508							0.007296169459436896
GGGKFVGG	8	Unmodified	_GGGKFVGG_					0	0	0			REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3569506210001	1	678.356951	677.349674	-0.58454	-0.00039653	-4.3079	-0.0029223	-4.8924	-0.0033188	678.3536265882498	56.803	0.12011	56.802	56.778	56.898	-0.00056458	552	64	1.2908988	0.03772545	1.2893794	263.78476	0	7.708893						195	6	3	NaN	NaN	NaN	0.84727	1	2703	2703		1.2418	0.91196	1	19056	+		7666	12687	4415	4509	6080	6080					-0.001906695710886197
GGGKFVGG	8	Unmodified						0	0	0			REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	678.356951	677.349674	1.5152	0.0010278	-6.2514	-0.0042407	-4.7362	-0.0032128	678.3524098589221	56.804	0.096203	56.804	56.78	56.876	0	552	67	1.2908988	0.039532423	1.2908988	263.78476		8.078125	0.0011	-0.00059752	0.00075972	NaN	1.2418	151	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14517	+		7667	12687	4415	4509							-0.001906695710886197
GGGKFVGG	8	Unmodified						0	0	0			REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	REV__ENST00000539735.5_1_12:6833379-6833820:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	678.356951	677.349674	-0.58454	-0.00039653	-4.3079	-0.0029223	-4.8924	-0.0033188	678.3536265882498	56.803	0.12011	56.802	56.778	56.898	-0.00056458	552	64	1.2908988	0.03772545	1.2893794	263.78476		7.708893	-0.0011	0.00072085	-0.00075972	NaN	1.2418	195	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19056	+		7668	12687	4415	4509							-0.001906695710886197
GGGKGAHK	8	Unmodified	_GGGKGAHK_					0	0	0			REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	1.5504	0.001103	-2.7993	-0.0019914	-1.2489	-0.00088843	711.3868980695489	45.668	1.1514	45.679	45.464	46.615	0.011349	732	583	1.1827712	0.35323775	1.1812518	241.46712	0	72.11479						8498	49	5	NaN	NaN	NaN	0.84887	1	3378	3378		0.32989	0.32989	1	16232000	+		7669	8247	4416	4510	6081	6081					0.015595375517477805
GGGKGAHK	8	Unmodified						0	0	0			REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.389648	710.382371	2.3835	0.0016956	-4.0308	-0.0028675	-1.6473	-0.0011719	711.3858410241683	45.694	1.1268	45.694	45.526	46.653	0	735	541	1.1809633	0.3274635	1.1809633	241.098		66.85289	0.0073944	-0.00048748	-0.00014429	NaN	0.32989	8161	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16199000	+		7670	8247	4416	4510							0.015595375517477805
GGGKGAHK	8	Unmodified						0	0	0			REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.389648	710.382371	1.5504	0.001103	-2.7993	-0.0019914	-1.2489	-0.00088843	711.3868980695489	45.668	1.1514	45.679	45.464	46.615	0.011349	732	583	1.1827712	0.35323775	1.1812518	241.46712		72.11479	-0.0073944	0.0003886	0.00014429	NaN	0.32989	8498	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16232000	+		7671	8247	4416	4510							0.015595375517477805
GGGKGGFI	8	Unmodified	_GGGKGGFI_					0	0	0			REV__tr|U7SXZ0|U7SXZ0_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00887PE=4SV=1	REV__tr|U7SXZ0|U7SXZ0_FUSNUP-typeconjugativetransferproteinTrbJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00887PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006851999	1	692.372601	691.365324	2.1859	0.0015134	-3.4311	-0.0023756	-1.2452	-0.00086214	692.3704448299483	26.094	0.072424	26.083	26.011	26.083	-0.011137	663	46	1.2243022	0.027044892	1.2227827	250.07582	0	5.524185						55	4	2	NaN	NaN	NaN	0.84945	1	2984	2984		0	0	1	5795	+		7672	13553	4417	4511	6082	6082					0.00729616945932321
GGGLKVIM	8	Unmodified	_GGGLKVIM_					0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	774.4542218246002	1	774.454222	773.446945	1.0555	0.00081741	0.41392	0.00032056	1.4694	0.001138	774.4555716265796	37.434	0.12036	37.434	37.41	37.53	0	543	67	1.296287	0.039490342	1.296287	264.23322	0	8.049622						123	6	3	NaN	NaN	NaN	0.84207	1	4404	4404		3.5732	0	1	7586.7	+		7673	11204	4418	4512	6083	6083					0.051159763135501635
GGGLKVIM	8	Unmodified						0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	774.454222	773.446945	1.0555	0.00081741	0.41392	0.00032056	1.4694	0.001138	774.4555716265796	37.434	0.12036	37.434	37.41	37.53	0	543	67	1.296287	0.039490342	1.296287	264.23322		8.049622	0	0	0	NaN	3.5732	123	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7586.7	+		7674	11204	4418	4512							0.051159763135501635
GGGNNGAV	8	Unmodified	_GGGNNGAV_					0	0	0		ENST00000453754.5_1_6:86387863-86388164:-|nuORF	ENST00000453754.5_1_6:86387863-86388164:-|nuORF	ENST00000453754.5_1_6:86387863-86388164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.2950786457001	1	645.295079	644.287802	2.2655	0.0014619	-5.441	-0.003511	-3.1755	-0.0020491	645.2951892690013	53.242	0.26401	53.242	53.17	53.434	0	672	211	1.2188909	0.12654102	1.2188909	249.32344	0	25.883896						1400	12	5	NaN	NaN	NaN	0.84727	1	1873	1873		1.2418	0	1	195710			7675	7050	4419	4513	6084	6084					-0.04857020990232286
GGGNNGAV	8	Unmodified						0	0	0		ENST00000453754.5_1_6:86387863-86388164:-|nuORF	ENST00000453754.5_1_6:86387863-86388164:-|nuORF	ENST00000453754.5_1_6:86387863-86388164:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	645.295079	644.287802	0.10675	6.8887E-05	-5.5819	-0.0036019	-5.4751	-0.0035331	645.2933687655577	53.264	0.1919	53.264	53.216	53.408	-0.00053787	669	196	1.2206948	0.11740804	1.2191753	249.69244		24.015747	0.010929	-3.5348E-05	0.00014226	NaN	1.2418	896	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105040			7676	7050	4419	4513							-0.04857020990232286
GGGPAGAH	8	Unmodified	_GGGPAGAH_					0	0	0			REV__ENST00000413221.6_1_5:111496572-111496680:+|nuORF	REV__ENST00000413221.6_1_5:111496572-111496680:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2895993373	1	623.289599	622.282323	1.5674	0.00097693	1.5234	0.0009495	3.0907	0.0019264	623.2907725863282	56.708	0.071846	56.708	56.684	56.756	0	795	61	1.1447623	0.036243677	1.1447623	234.33237	0	7.4190674						79	4	2	NaN	NaN	NaN	0.84651	1	1186	1186		1.6704	0	1	6567.3	+		7677	12074	4420	4514	6085	6085					-0.04392699782044929
GGGPGYYR	8	Unmodified	_GGGPGYYR_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.6957522353	2	413.695752	825.376952	0.66575	0.00027542	-6.094	-0.0025211	-5.4283	-0.0022457	413.6936497327407	31.452	0.096527	31.452	31.38	31.477	0	1389	88	0.7821392	0.0537017	0.7821392	318.50394	0	21.86847						103	5	2	NaN	NaN	NaN	0.84876	1	5093	5093		0.39566	0	1	7572.4	+		7678	10132	4421	4515	6086	6086					-0.042721860307096904
GGGPGYYR	8	Unmodified						0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	413.695752	825.376952	0.66575	0.00027542	-6.094	-0.0025211	-5.4283	-0.0022457	413.6936497327407	31.452	0.096527	31.452	31.38	31.477	0	1389	88	0.7821392	0.0537017	0.7821392	318.50394		21.86847	0.051325	-0.00019712	0.0016853	NaN	0.39566	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7572.4	+		7679	10132	4421	4515							-0.042721860307096904
GGGPGYYR	8	Unmodified						0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	413.695752	825.376952	1.0477	0.00043343	-5.478	-0.0022662	-4.4303	-0.0018328	413.6938299892857	31.355	0.07239	31.35	31.277	31.35	-0.0050716	1392	37	0.780288	0.022215366	0.77876854	317.7501		9.0466	-0.051325	0.00031258	-0.0016853	NaN	0.39566	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5284.6	+		7680	10132	4421	4515							-0.042721860307096904
GGGPSELF	8	Unmodified	_GGGPSELF_					0	0	0			REV__ENST00000455441.5_1_3:186648403-186648589:+|nuORF	REV__ENST00000455441.5_1_3:186648403-186648589:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3620955784002	1	763.362096	762.354819	1.9938	0.001522	4.4217	0.0033754	6.4155	0.0048973	763.36506870226	25.371	0.21714	25.371	25.322	25.539	0	552	88	1.2908988	0.05210817	1.2908988	263.2016	0	10.624359						317	10	3	NaN	NaN	NaN	0.80071	1	4241	4241		9.1232	0	1	44215	+		7681	12242	4422	4516	6087	6087					-0.03586410499133308
GGGPSGLE	8	Unmodified	_GGGPSGLE_					0	0	0			REV__nc|ENSG00000179915|P58400-1|NRXN1	REV__nc|ENSG00000179915|P58400-1|NRXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	337.1612109262	2	337.161211	672.307869	1.1862	0.00039995	3.111	0.0010489	4.2972	0.0014489	337.1634188304726	41.522	0.048157	41.522	41.474	41.522	0	1521	34	0.70049703	0.020458162	0.70049703	286.31577	0	8.361938						59	3	3	NaN	NaN	NaN	0.8439	1	2647	2647		3.1533	0	1	4657.4	+		7682	13182	4423	4517	6088	6088					-0.0413927005027972
GGGRGGKA	8	Unmodified	_GGGRGGKA_					0	0	0		ENST00000554224.5_1_14:100762018-100772718:-|nuORF;ENSG00000259956|ENST00000563281|RBM15B	ENST00000554224.5_1_14:100762018-100772718:-|nuORF	ENST00000554224.5_1_14:100762018-100772718:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.2333	0.00081319	-1.8811	-0.0012403	-0.64779	-0.00042712	659.3570528092068	26.577	0.072372	26.566	26.542	26.614	-0.010645	753	136	1.1701111	0.08143926	1.1685916	239.23932	0	16.65094						244	4	2	NaN	NaN	NaN	0.84887	1	2167	2167		0.32989	0	1	32316			7683	6140	4424	4518	6089	6089					0.008229645176470513
GGGRSAIF	8	Unmodified	_GGGRSAIF_					0	0	0			REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.4049634461	1	764.404963	763.397687	1.2894	0.00098559	-7.3472	-0.0056162	-6.0578	-0.0046306	764.399985790068	32.249	0.096519	32.249	32.225	32.321	0	567	55	1.2819146	0.032348156	1.2819146	261.36356	0	6.5953064						95	5	2	NaN	NaN	NaN	0.75561	1	4261	4261		15.175	0	1	6641.8	+		7684	11650	4425	4519	6090	6090					0.006524043489434916
GGGRSAIF	8	Unmodified						0	0	0			REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.404963	763.397687	1.2894	0.00098559	-7.3472	-0.0056162	-6.0578	-0.0046306	764.399985790068	32.249	0.096519	32.249	32.225	32.321	0	567	55	1.2819146	0.032348156	1.2819146	261.36356		6.5953064	0.0024316	0.00090837	-0.0019358	NaN	15.175	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6641.8	+		7685	11650	4425	4519							0.006524043489434916
GGGRSAIF	8	Unmodified						0	0	0			REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.404963	763.397687	1.3133	0.0010039	-9.758	-0.0074591	-8.4447	-0.0064552	764.3975371324068	32.248	0.12069	32.244	32.22	32.341	-0.0037613	558	40	1.2873057	0.023358822	1.2857863	262.46274		4.762512	-0.0024316	-0.00093446	0.0019358	NaN	15.175	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6059.3	+		7686	11650	4425	4519							0.006524043489434916
GGGTHEAL	8	Unmodified	_GGGTHEAL_					0	0	0			REV__ENST00000589389.5_1_16:4853547-4853640:-|nuORF	REV__ENST00000589389.5_1_16:4853547-4853640:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3525935245999	1	741.352594	740.345317	1.4299	0.0010601	-10.38	-0.0076956	-8.9506	-0.0066355	741.3447716097888	30.8	0.24131	30.794	30.746	30.987	-0.0057545	570	109	1.2801172	0.06477249	1.2785977	261.14053	0	13.213409						377	11	2	NaN	NaN	NaN	0.74229	1	3836	3836		16.417	3.8288	1	81301	+		7687	12906	4426	4520	6091	6091					-0.03524178784675769
GGGTHEAL	8	Unmodified						0	0	0			REV__ENST00000589389.5_1_16:4853547-4853640:-|nuORF	REV__ENST00000589389.5_1_16:4853547-4853640:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.352594	740.345317	1.4299	0.0010601	-10.38	-0.0076956	-8.9506	-0.0066355	741.3447716097888	30.8	0.24131	30.794	30.746	30.987	-0.0057545	570	109	1.2801172	0.06477249	1.2785977	261.14053		13.213409	-0.0034256	-2.9092E-05	0.00013908	NaN	16.417	377	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81301	+		7688	12906	4426	4520							-0.03524178784675769
GGGVGAWT	8	Unmodified	_GGGVGAWT_					0	0	0		chr19:50982457-50982834|158|10.94|0.11|6.63|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982834,50983661|KLK7,None|10;chr19:50982457-50982797|196|10.02|0.14|6.14|-|0|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982797,50983661|KLK7,None|10;chr19:50982457-50982980|158|10.86|0.11|6.63|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982980,50983661|KLK7,None|4;chr19:50982457-50982834|158|10.94|0.11|6.63|-|2|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982834,50983661|KLK7,None|4;chr19:50982457-50982797|196|10.02|0.14|6.14|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982797,50983661|KLK7,None|4	chr19:50982457-50982834|158|10.94|0.11|6.63|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982834,50983661|KLK7,None|10	chr19:50982457-50982834|158|10.94|0.11|6.63|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982834,50983661|KLK7,None|10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3362151789	1	704.336215	703.328939	1.5636	0.0011013	7.6374	0.0053793	9.201	0.0064806	704.342093079163	25.467	0.19304	25.455	25.407	25.6	-0.012011	693	61	1.2062578	0.036100388	1.2047384	246.30865	0	7.371399						187	9	2	NaN	NaN	NaN	0.84651	1	3214	3214		1.6704	0.42852	1	13323			7689	136	4427	4521	6092	6092					-0.034592599507618615
GGGVGVPG	8	Unmodified	_GGGVGVPG_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.16101396095	2	300.161014	598.307475	1.3802	0.00041427	7.5002	0.0022513	8.8804	0.0026656	300.1632746439376	42.195	0.072048	42.195	42.123	42.195	0	1521	34	0.70049703	0.020458162	0.70049703	287.01874	0	8.382446						48	4	2	NaN	NaN	NaN	0.84876	1	606	606		0.39566	0	1	3023.4			7690	5205	4428	4522	6093	6093					-0.007746449794694854
GGGVGVPG	8	Unmodified						0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	300.161014	598.307475	1.9489	0.00058499	4.6905	0.0014079	6.6394	0.0019929	300.1625334974074	41.977	0.023979	41.986	41.986	42.01	0.0089951	1515	31	0.7042165	0.018595338	0.70269704	288.54276		7.619171	-0.10424	-0.00089313	0.0011	NaN	0.39566	33	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2704.8			7691	5205	4428	4522							-0.007746449794694854
GGGVVSPP	8	Unmodified	_GGGVVSPP_					0	0	0		SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|45|3|sense	SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|45|3|sense	SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|45|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.35661627	1	669.356616	668.34934	1.5996	0.0010707	-8.2667	-0.0055334	-6.6671	-0.0044627	669.3511164359307	55.58	0.096107	55.58	55.532	55.629	0	585	61	1.2711272	0.035977006	1.2711272	259.81387	0	7.3535767						108	5	2	NaN	NaN	NaN	0.84692	1	2564	2564		1.4396	1.0439	1	9536.5			7692	13709	4429	4523	6094	6094					0.0018991070904803564
GGHAAAGP	8	Unmodified	_GGHAAAGP_					0	0	0			REV__ENST00000496425.1_1_20:62373927-62374363:+|nuORF	REV__ENST00000496425.1_1_20:62373927-62374363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3052494015	1	637.305249	636.297973	1.9317	0.0012311	-3.0065	-0.0019161	-1.0748	-0.000685	637.3036739073526	26.432	0.096546	26.432	26.408	26.505	0	708	76	1.1972283	0.04517615	1.1972283	244.95624	0	9.243164						102	5	2	NaN	NaN	NaN	0.83849	1	1636	1636		4.0537	0	1	10431	+		7693	12336	4430	4524	6095	6095					-0.034724132650126194
GGHAGSLA	8	Unmodified	_GGHAGSLA_					0	0	0			REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.1693703092999	2	335.16937	668.324188	1.5193	0.00050921	-9.4837	-0.0031787	-7.9645	-0.0026694	335.1663632180015	40.39	0.16825	40.397	40.349	40.517	0.0067558	1536	64	0.69119483	0.039073586	0.6896754	282.54718	0	15.972534						213	8	2	NaN	NaN	NaN	0.84876	1	2457	2457		0.39566	0	1	106630	+		7694	12342	4431	4525	6096	6096					-0.02324144093540781
GGHAGSLA	8	Unmodified						0	0	0			REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.16937	668.324188	1.1356	0.00038062	-8.1666	-0.0027372	-7.031	-0.0023566	335.1669824109666	40.537	0.072117	40.537	40.537	40.609	0	1536	58	0.69119483	0.035356104	0.69119483	282.54718		14.452911	0.069717	0.00053314	0.00075972	NaN	0.39566	141	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61608	+		7695	12342	4431	4525							-0.02324144093540781
GGHAGSLA	8	Unmodified						0	0	0			REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	REV__ENST00000474117.1_1_9:123538497-123540684:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	335.16937	668.324188	1.5193	0.00050921	-9.4837	-0.0031787	-7.9645	-0.0026694	335.1663632180015	40.39	0.16825	40.397	40.349	40.517	0.0067558	1536	64	0.69119483	0.039073586	0.6896754	282.54718		15.972534	-0.069717	-0.00034978	-0.00075972	NaN	0.39566	213	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106630	+		7696	12342	4431	4525							-0.02324144093540781
GGHDAPLG	8	Unmodified	_GGHDAPLG_					0	0	0		nc|ENSG00000184368|Q96T17-4|MAP7D2	nc|ENSG00000184368|Q96T17-4|MAP7D2	nc|ENSG00000184368|Q96T17-4|MAP7D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3420288382999	1	723.342029	722.334752	1.0481	0.00075814	-10.145	-0.0073382	-9.0968	-0.0065801	723.334746054162	28.145	0.26546	28.137	28.088	28.354	-0.0089798	1239	82	0.87444305	0.04973364	0.8729236	178.46492	0	10.150131						328	12	3	NaN	NaN	NaN	0.84876	1	3556	3556		0.39566	0	1	44644			7697	7998	4432	4526	6097	6097					-0.03752161439103929
GGHDAPLG	8	Unmodified						0	0	0		nc|ENSG00000184368|Q96T17-4|MAP7D2	nc|ENSG00000184368|Q96T17-4|MAP7D2	nc|ENSG00000184368|Q96T17-4|MAP7D2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	723.342029	722.334752	1.6181	0.0011705	-10.562	-0.0076403	-8.9443	-0.0064698	723.3344958698133	28.122	0.2172	28.122	28.098	28.315	0	1239	76	0.87444305	0.046049654	0.87444305	178.46492		9.39827	-0.0072062	-0.00017652	0.00075972	NaN	0.39566	308	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41454			7698	7998	4432	4526							-0.03752161439103929
GGHGAAAA	8	Unmodified	_GGHGAAAA_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.2895993372999	1	611.289599	610.282323	-0.52424	-0.00032046	-0.011405	-6.972E-06	-0.53565	-0.00032744	611.2900444991847	46.652	0.35949	46.662	46.518	46.877	0.0098152	732	103	1.1827712	0.061508775	1.1812518	242.21498	0	12.596115						566	16	3	NaN	NaN	NaN	0.84945	1	760	760		0	0	1	95476			7699	4663	4433	4527	6098	6098					-0.03840699782062984
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	1.5119	0.0010756	-6.8594	-0.0048797	-5.3475	-0.0038041	711.3848738870829	54.092	0.16783	54.092	54.044	54.212	0	720	106	1.1900014	0.06329405	1.1900014	242.94319	0	12.921707						350	8	4	NaN	NaN	NaN	0.84945	1	3431	3431		0	0	1	91650	+		7700	12581	4434	4528	6099	6099					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	1.7272	0.0012287	-6.567	-0.0046717	-4.8398	-0.003443	711.3849758645151	48.307	0.45544	48.307	47.923	48.379	0	747	97	1.1737292	0.05791533	1.1737292	239.62119	0	11.823639						684	20	3	NaN	NaN	NaN	0.84945	1	3432	3432		0	0	1	291400	+		7701	12581	4434	4528	6100	6100					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	1.3004	0.00092508	-5.9504	-0.0042331	-4.65	-0.003308	711.385092803104	49.648	0.1197	49.648	49.648	49.768	0	747	58	1.1737292	0.03437805	1.1737292	239.62117	0	7.018402						138	6	2	NaN	NaN	NaN	0.84945	1	3433	3433		0	0	1	13529	+		7702	12581	4434	4528	6101	6101					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	1.6334	0.001162	-5.9713	-0.0042479	-4.3379	-0.0030859	711.3852718246563	47.66	0.26362	47.66	47.612	47.875	0	762	97	1.1646824	0.057934046	1.1646824	237.77423	0	11.827438						513	12	4	NaN	NaN	NaN	0.84945	1	3434	3434		0	0	1	179770	+		7703	12581	4434	4528	6102	6102					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	1.3497	0.00096018	-5.3831	-0.0038294	-4.0333	-0.0028693	711.3858175536715	50.056	0.071903	50.056	50.032	50.104	0	750	46	1.1719203	0.027134776	1.1719203	239.25186	0	5.5396576						88	4	2	NaN	NaN	NaN	0.84945	1	3435	3435		0	0	1	5685.7	+		7704	12581	4434	4528	6103	6103					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	2.3835	0.0016956	-4.0308	-0.0028675	-1.6473	-0.0011719	711.3858410241683	45.694	1.1268	45.694	45.526	46.653	0	735	541	1.1809633	0.3274635	1.1809633	241.098	0	66.85289						8161	48	5	NaN	NaN	NaN	0.84945	1	3436	3436		0	0	1	16199000	+		7705	12581	4434	4528	6104	6104					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329	1	711.389648	710.382371	2.1927	0.0015599	-3.7036	-0.0026347	-1.5109	-0.0010748	711.3862917185996	44.544	0.98289	44.544	44.376	45.359	0	753	508	1.1701111	0.30756664	1.1701111	238.8825	0	62.790863						6486	42	5	NaN	NaN	NaN	0.84945	1	3437	3437		0	0	1	12367000	+		7706	12581	4434	4528	6105	6105					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	-0.51173	-0.00036404	-4.6593	-0.0033146	-5.1711	-0.0036786	711.3867912784639	54.09	0.19174	54.089	54.041	54.233	-0.0006218	717	139	1.1918083	0.08322668	1.1902889	243.3121	0	16.991028						371	9	4	NaN	NaN	NaN	0.84945	1	3374	3374		0	0	1	91405	+		7707	12581	4434	4528	6106	6106					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	-0.25188	-0.00017919	-4.1776	-0.0029719	-4.4295	-0.0031511	711.3866648229176	48.185	0.33559	48.19	47.974	48.31	0.004818	747	112	1.1737292	0.066975474	1.1722097	239.62117	0	13.673279						557	15	2	NaN	NaN	NaN	0.84945	1	3375	3375		0	0	1	257130	+		7708	12581	4434	4528	6107	6107					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	0.10315	7.3381E-05	-3.9241	-0.0027916	-3.821	-0.0027182	711.3868913743008	48.569	0.98235	48.574	48.358	49.34	0.004818	741	118	1.1773466	0.07058823	1.1758271	240.35966	0	14.410828						1650	42	4	NaN	NaN	NaN	0.84945	1	3376	3376		0	0	1	790700	+		7709	12581	4434	4528	6108	6108					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	-0.20838	-0.00014824	-2.9652	-0.0021094	-3.1736	-0.0022577	711.387549630604	47.538	0.33543	47.546	47.498	47.833	0.007412	756	85	1.1683017	0.05066502	1.1667823	238.5131	0	10.34346						685	15	3	NaN	NaN	NaN	0.84945	1	3377	3377		0	0	1	266250	+		7710	12581	4434	4528	6109	6109					0.015595375517477805
GGHGAGKK	8	Unmodified	_GGHGAGKK_					0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3896477329	1	711.389648	710.382371	1.5481	0.0011013	-2.0592	-0.0014649	-0.51109	-0.00036358	711.3869981776669	44.518	0.81498	44.529	44.362	45.177	0.011646	750	628	1.1719203	0.38114548	1.1704009	239.25185	0	77.81224						4995	35	5	NaN	NaN	NaN	0.84945	1	3379	3379		0	0	1	7999800	+		7711	12581	4434	4528	6110	6110					0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.389648	710.382371	1.5119	0.0010756	-6.8594	-0.0048797	-5.3475	-0.0038041	711.3848738870829	54.092	0.16783	54.092	54.044	54.212	0	720	106	1.1900014	0.06329405	1.1900014	242.94319		12.921707	0.0012657	-0.00065591	-0.0001438	NaN	0	350	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91650	+		7712	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.389648	710.382371	1.7272	0.0012287	-6.567	-0.0046717	-4.8398	-0.003443	711.3849758645151	48.307	0.45544	48.307	47.923	48.379	0	747	97	1.1737292	0.05791533	1.1737292	239.62119		11.823639	0.058262	-0.00068305	0.00075972	NaN	0	684	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291400	+		7713	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.389648	710.382371	1.6334	0.001162	-5.9713	-0.0042479	-4.3379	-0.0030859	711.3852718246563	47.66	0.26362	47.66	47.612	47.875	0	762	97	1.1646824	0.057934046	1.1646824	237.77423		11.827438	0.056934	-0.0013097	-0.0010499	NaN	0	513	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179770	+		7714	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.389648	710.382371	2.1927	0.0015599	-3.7036	-0.0026347	-1.5109	-0.0010748	711.3862917185996	44.544	0.98289	44.544	44.376	45.359	0	753	508	1.1701111	0.30756664	1.1701111	238.8825		62.790863	0.0071058	-0.00043424	-0.00014487	NaN	0	6486	42	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12367000	+		7715	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.389648	710.382371	-0.51173	-0.00036404	-4.6593	-0.0033146	-5.1711	-0.0036786	711.3867912784639	54.09	0.19174	54.089	54.041	54.233	-0.0006218	717	139	1.1918083	0.08322668	1.1902889	243.3121		16.991028	-0.0012657	0.00090917	0.0001438	NaN	0	371	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91405	+		7716	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.389648	710.382371	-0.25188	-0.00017919	-4.1776	-0.0029719	-4.4295	-0.0031511	711.3866648229176	48.185	0.33559	48.19	47.974	48.31	0.004818	747	112	1.1737292	0.066975474	1.1722097	239.62117		13.673279	-0.058262	0.0010167	-0.00075972	NaN	0	557	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257130	+		7717	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.389648	710.382371	-0.20838	-0.00014824	-2.9652	-0.0021094	-3.1736	-0.0022577	711.387549630604	47.538	0.33543	47.546	47.498	47.833	0.007412	756	85	1.1683017	0.05066502	1.1667823	238.5131		10.34346	-0.056934	0.00082879	0.0010499	NaN	0	685	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266250	+		7718	12581	4434	4528							0.015595375517477805
GGHGAGKK	8	Unmodified						0	0	0			REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	REV__ENST00000517637.2_1_11:67010562-67011027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.389648	710.382371	1.5481	0.0011013	-2.0592	-0.0014649	-0.51109	-0.00036358	711.3869981776669	44.518	0.81498	44.529	44.362	45.177	0.011646	750	628	1.1719203	0.38114548	1.1704009	239.25185		77.81224	-0.0071058	0.00073554	0.00014487	NaN	0	4995	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7999800	+		7719	12581	4434	4528							0.015595375517477805
GGHGHPPG	8	Unmodified	_GGHGHPPG_					0	0	0		ENSG00000233041|ENST00000448599|PHGR1	ENSG00000233041|ENST00000448599|PHGR1	ENSG00000233041|ENST00000448599|PHGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3270474761	1	715.327047	714.319771	0.42669	0.00030522	5.2169	0.0037318	5.6436	0.004037	715.3307354098033	39.068	0.19281	39.068	38.996	39.189	0	696	133	1.2044523	0.07946336	1.2044523	245.8677	0	16.221024						311	9	3	NaN	NaN	NaN	0.84651	1	3504	3504		1.6704	0.2308	1	34219			7720	6040	4435	4529	6111	6111					-0.04881608516438973
GGHMGKGA	8	Unmodified	_GGHMGKGA_					0	0	0			REV__ENSG00000135413|ENST00000257867|LACRT	REV__ENSG00000135413|ENST00000257867|LACRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.3351693214	1	714.335169	713.327893	0.64912	0.00046369	-5.7748	-0.0041251	-5.1257	-0.0036614	714.3320324161541	41.185	0.16829	41.185	41.113	41.281	0	708	61	1.1972283	0.036123395	1.1972283	244.39952	0	7.374161						230	8	3	NaN	NaN	NaN	0.84887	1	3478	3478		0.32989	0	1	29405	+		7721	9616	4436	4530	6112	6112					-0.04023797591321454
GGHMGKGA	8	Unmodified						0	0	0			REV__ENSG00000135413|ENST00000257867|LACRT	REV__ENSG00000135413|ENST00000257867|LACRT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	714.335169	713.327893	0.64912	0.00046369	-5.7748	-0.0041251	-5.1257	-0.0036614	714.3320324161541	41.185	0.16829	41.185	41.113	41.281	0	708	61	1.1972283	0.036123395	1.1972283	244.39952		7.374161	0.033234	0.00040948	-0.0010465	NaN	0.32989	230	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29405	+		7722	9616	4436	4530							-0.04023797591321454
GGHMGKGA	8	Unmodified						0	0	0			REV__ENSG00000135413|ENST00000257867|LACRT	REV__ENSG00000135413|ENST00000257867|LACRT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	714.335169	713.327893	0.7279	0.00051997	-7.7459	-0.0055332	-7.018	-0.0050132	714.3317612986203	41.111	0.048119	41.118	41.094	41.143	0.0074959	702	64	1.2008407	0.03791952	1.1993213	245.13695		7.740814	-0.033234	-0.0009986	0.0010465	NaN	0.32989	121	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14537	+		7723	9616	4436	4530							-0.04023797591321454
GGHPVGTL	8	Unmodified	_GGHPVGTL_					0	0	0		ENST00000468189.5_1_3:61186305-61237111:-|nuORF	ENST00000468189.5_1_3:61186305-61237111:-|nuORF	ENST00000468189.5_1_3:61186305-61237111:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088001	1	737.394064	736.386788	1.589	0.0011717	-1.5122	-0.0011151	0.076774	5.6613E-05	737.3939975904194	24.236	0.12068	24.224	24.175	24.296	-0.012747	582	52	1.2729256	0.030572295	1.2714062	259.6988	0	6.237274						146	6	3	NaN	NaN	NaN	0.84207	1	3782	3782		3.5732	0	1	11252			7724	7128	4437	4531	6113	6113					0.008050019746633552
GGHVGASA	8	Unmodified	_GGHVGASA_					0	0	0		ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3158140878	1	655.315814	654.308538	1.275	0.00083555	-9.8711	-0.0064687	-8.5961	-0.0056331	655.3086140086194	27.76	0.12063	27.76	27.736	27.857	0	732	37	1.1827712	0.021699667	1.1827712	241.85825	0	4.4372406						74	6	2	NaN	NaN	NaN	0.84207	1	2163	2163		3.5732	0	1	5339.8			7725	6343	4438	4532	6114	6114					-0.0324443061057309
GGHVGASA	8	Unmodified	_GGHVGASA_					0	0	0		ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3158140878	1	655.315814	654.308538	1.4504	0.00095046	7.1019	0.004654	8.5523	0.0056045	655.320690604043	22.573	0.1447	22.573	22.525	22.67	0	768	103	1.1610622	0.06156814	1.1610622	237.41902	0	12.589706						195	7	2	NaN	NaN	NaN	0.84207	1	2164	2164		3.5732	0	1	40258			7726	6343	4438	4532	6115	6115					-0.0324443061057309
GGHVGASA	8	Unmodified						0	0	0		ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	ENST00000273183.7_1_3:36421947-36422046:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	655.315814	654.308538	0.98144	0.00064315	-7.2148	-0.004728	-6.2334	-0.0040848	655.311120456775	27.759	0.09651	27.75	27.726	27.822	-0.009552	738	73	1.179155	0.04341328	1.1776356	241.11877		8.877335	-0.0051869	0.00097589	-0.0025678	NaN	3.5732	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5963.8			7727	6343	4438	4532							-0.0324443061057309
GGIFVHCE	8	Unmodified	_GGIFVHCE_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.3923498493	1	861.39235	860.385073	1.1368	0.00097922	-4.9004	-0.0042211	-3.7636	-0.0032419	861.3909414250345	30.293	0.16887	30.287	30.214	30.383	-0.0064106	438	52	1.359022	0.030412912	1.3575026	276.53262	0	6.188385						131	8	2	NaN	NaN	NaN	0.79379	1	5395	5395		10.052	1.7613	1	7314.9	+		7728	8533	4439	4533	6116	6116					-0.050703751056062174
GGIGAMGL	8	Unmodified	_GGIGAMGL_					0	0	0			REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021002	1	675.349422	674.342146	1.0567	0.00071361	4.2679	0.0028823	5.3246	0.0035959	675.3525747102142	24.405	0.048277	24.393	24.368	24.417	-0.012747	747	124	1.1737292	0.07415247	1.1722097	239.86325	0	15.153778						132	3	2	NaN	NaN	NaN	0.83849	1	2625	2625		4.0537	0	1	10516	+		7729	11922	4440	4534	6117	6117					-0.008051451630080919
GGIGAMGL	8	Unmodified	_GGIGAMGL_					0	0	0			REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021002	1	675.349422	674.342146	0.91282	0.00061647	5.9597	0.0040249	6.8725	0.0046414	675.3532107610281	24.502	0.096525	24.489	24.441	24.537	-0.012747	747	112	1.1737292	0.06693947	1.1722097	239.86324	0	13.679764						242	5	2	NaN	NaN	NaN	0.83849	1	2629	2629		4.0537	0	1	21220	+		7730	11922	4440	4534	6118	6118					-0.008051451630080919
GGIGAMGL	8	Unmodified						0	0	0			REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	REV__ENST00000567644.5_1_15:74217618-74217795:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.0567	0.00071361	4.2679	0.0028823	5.3246	0.0035959	675.3525747102142	24.405	0.048277	24.393	24.368	24.417	-0.012747	747	124	1.1737292	0.07415247	1.1722097	239.86325		15.153778	0.0055665	0.00016176	0.0010494	NaN	4.0537	132	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10516	+		7731	11922	4440	4534							-0.008051451630080919
GGIGGFGK	8	Unmodified	_GGIGGFGK_					0	0	0			REV__ENST00000478788.1_1_7:151200408-151200546:+|nuORF	REV__ENST00000478788.1_1_7:151200408-151200546:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852002	1	692.372601	691.365324	1.4904	0.0010319	6.2061	0.0042969	7.6964	0.0053288	692.3766222158439	30.439	0.096512	30.439	30.391	30.487	0	744	43	1.1755381	0.025321722	1.1755381	240.11523	0	5.1722107						71	5	2	NaN	NaN	NaN	0.84887	1	3057	3057		0.32989	0	1	5403.5	+		7732	9319	4441	4535	6119	6119					0.007296169459550583
GGIGGFGK	8	Unmodified	_GGIGGFGK_					0	0	0			REV__ENST00000478788.1_1_7:151200408-151200546:+|nuORF	REV__ENST00000478788.1_1_7:151200408-151200546:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.80246	0.0005556	7.1292	0.004936	7.9316	0.0054917	692.3779052394118	31.21	0.16893	31.205	31.181	31.35	-0.0050716	756	52	1.1683017	0.030762553	1.1667823	238.63713	0	6.2835693						199	8	3	NaN	NaN	NaN	0.84887	1	2990	2990		0.32989	0	1	23680	+		7733	9319	4441	4535	6120	6120					0.007296169459550583
GGILMVSF	8	Unmodified	_GGILMVSF_					0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4382374094001	1	823.438237	822.430961	1.9208	0.0015817	-1.0319	-0.00084967	0.88895	0.00073199	823.4376253059083	32.442	0.1689	32.442	32.37	32.539	0	456	127	1.348284	0.07521391	1.348284	274.54672	0	15.315582						549	8	4	NaN	NaN	NaN	0.50567	1	5051	5051		30.791	8.6648	1	177060	+		7734	8864	4442	4536	6121	6121					0.012642700766377857
GGILMVSF	8	Unmodified						0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	823.438237	822.430961	1.9208	0.0015817	-1.0319	-0.00084967	0.88895	0.00073199	823.4376253059083	32.442	0.1689	32.442	32.37	32.539	0	456	127	1.348284	0.07521391	1.348284	274.54672		15.315582	0.0020997	9.2746E-05	0.00075972	NaN	30.791	549	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177060	+		7735	8864	4442	4536							0.012642700766377857
GGILMVSF	8	Unmodified						0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	823.438237	822.430961	1.2679	0.001044	-1.3013	-0.0010715	-0.033356	-2.7466E-05	823.4375094535869	32.441	0.14484	32.438	32.39	32.534	-0.0031052	456	157	1.348284	0.0931617	1.3467646	274.54672		18.970245	-0.0020997	-0.00012909	-0.00075972	NaN	30.791	587	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182520	+		7736	8864	4442	4536							0.012642700766377857
GGISGKTL	8	Unmodified	_GGISGKTL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.4250301862002	1	732.42503	731.417754	1.6908	0.0012384	4.7563	0.0034837	6.4471	0.004722	732.4290672430978	30.004	0.21722	30.004	29.908	30.125	0	531	70	1.3034686	0.041296244	1.3034686	265.96307	0	8.4262085						285	10	3	NaN	NaN	NaN	0.80692	1	3773	3773		8.2903	0	1	30128			7737	5930	4443	4537	6122	6122					0.041301552889080995
GGKAFCAG	8	Unmodified	_GGKAFCAG_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.329021311	1	710.329021	709.321745	0.31917	0.00022671	-2.9148	-0.0020704	-2.5956	-0.0018437	710.3269267759126	39.068	0.1929	39.068	39.02	39.213	0	741	49	1.1773466	0.02893281	1.1773466	240.36647	0	5.906906						111	9	2	NaN	NaN	NaN	0.84945	1	3406	3406		0	0	1	8552.3			7738	5758	4444	4538	6123	6123					-0.044543158228407265
GGKGEQGL	8	Unmodified	_GGKGEQGL_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.383893653	1	745.383894	744.376617	1.6163	0.0012047	5.5793	0.0041587	7.1956	0.0053635	745.3877339079996	25.057	0.21715	25.057	25.009	25.226	0	594	61	1.265731	0.03598082	1.265731	258.1803	0	7.339279						247	10	3	NaN	NaN	NaN	0.69898	1	3973	3973		19.118	2.7017	1	31626			7739	3494	4445	4539	6124	6124					-0.005796057505790486
GGKGEQGL	8	Unmodified						0	0	0		ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	745.383894	744.376617	1.7173	0.00128	4.6862	0.003493	6.4035	0.0047731	745.3870735471294	25.057	0.24125	25.045	24.996	25.238	-0.012011	594	73	1.265731	0.043181658	1.2642115	258.1803		8.80806	-0.0061172	-0.00038871	-0.00075972	NaN	19.118	276	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32288			7740	3494	4445	4539							-0.005796057505790486
GGKGGGPCG	9	Unmodified	_GGKGGGPCG_					0	0	0			REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.303534842	1	689.303535	688.296258	1.2919	0.00089048	-3.3938	-0.0023394	-2.102	-0.0014489	689.3009199037735	42.243	0.11999	42.243	42.171	42.291	0	759	34	1.1664921	0.01990521	1.1664921	238.2882	0	4.0661774						89	6	2	NaN	NaN	NaN	0.6907	1	2994	2994		0	0	1	7092.6	+		7741	11708	4446	4540	6125	6125					-0.06035790345276837
GGKGGGPCG	9	Unmodified						0	0	0			REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	689.303535	688.296258	1.2919	0.00089048	-3.3938	-0.0023394	-2.102	-0.0014489	689.3009199037735	42.243	0.11999	42.243	42.171	42.291	0	759	34	1.1664921	0.01990521	1.1664921	238.2882		4.0661774	0.0084267	0.00042127	-0.00014506	NaN	0	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7092.6	+		7742	11708	4446	4540							-0.06035790345276837
GGKGGGPCG	9	Unmodified						0	0	0			REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	REV__ENST00000317506.7_1_16:67758723-67758927:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	689.303535	688.296258	1.0132	0.00069842	-5.7275	-0.003948	-4.7143	-0.0032496	689.299131358695	42.217	0.11994	42.226	42.154	42.274	0.0089951	756	37	1.1683017	0.021713614	1.1667823	238.65785		4.4355927	-0.0084267	-0.0011873	0.00014506	NaN	0	77	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5500.6	+		7743	11708	4446	4540							-0.06035790345276837
GGKGGVFA	8	Unmodified	_GGKGGVFA_					0	0	0		MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852	1	692.372601	691.365324	1.1286	0.00078144	8.5741	0.0059365	9.7028	0.0067179	692.37880496434	33.914	0.31374	33.914	33.842	34.155	0	738	97	1.179155	0.057884336	1.179155	240.85402	0	11.823441						662	14	4	NaN	NaN	NaN	0.84876	1	3065	3065		0.39566	0.065779	1	153500			7744	7876	4447	4541	6126	6126					0.007296169459436896
GGKGGVFA	8	Unmodified	_GGKGGVFA_					0	0	0		MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	1.418	0.0009818	7.7557	0.0053698	9.1737	0.0063516	692.3781599475792	36.782	0.45695	36.783	36.687	37.144	0.0016747	741	130	1.1773466	0.07775307	1.1758271	240.48465	0	15.881805						910	20	4	NaN	NaN	NaN	0.84876	1	2996	2996		0.39566	0.065779	1	242430			7745	7876	4447	4541	6127	6127					0.007296169459436896
GGKGGVFA	8	Unmodified						0	0	0		MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	MDN1|p.E1802V|1|0.46|ENSG00000112159|chr6:89727900-89727900|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.7398	0.0012046	8.6499	0.005989	10.39	0.0071936	692.3784979884285	36.784	0.55368	36.784	36.688	37.241	0	741	139	1.1773466	0.08319986	1.1773466	240.48463		16.9944	0.00025462	0.00033527	0.00075972	NaN	0.39566	874	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281980			7746	7876	4447	4541							0.007296169459436896
GGKGKGKG	8	Unmodified	_GGKGKGKG_					0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.410048824	1	688.410049	687.402772	1.0238	0.00070482	-5.3623	-0.0036915	-4.3385	-0.0029866	688.406949792543	33.382	0.096527	33.38	33.356	33.452	-0.0018501	636	52	1.2405256	0.030634403	1.2390062	253.41798	0	6.258087						72	5	2	NaN	NaN	NaN	0.84945	1	2907	2907		0	0	1	6031	+		7747	9967	4448	4542	6128	6128					0.046567082115529956
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3831653715	1	722.383165	721.375889	0.53961	0.00038981	4.7787	0.0034521	5.3183	0.0038419	722.387106707387	35.385	0.096508	35.385	35.361	35.458	0	651	49	1.2315145	0.028837085	1.2315145	251.3457	0	5.885483						91	5	2	NaN	NaN	NaN	0.80071	1	3621	3621		9.1232	5.55	1	6040			7748	5941	4449	4543	6129	6129					0.004055996003785367
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3831653715	1	722.383165	721.375889	1.454	0.0010504	5.8059	0.0041941	7.2599	0.0052444	722.3874652978441	34.469	0.24129	34.469	34.396	34.638	0	639	79	1.2387238	0.046850204	1.2387238	252.81708	0	9.561874						344	11	3	NaN	NaN	NaN	0.7718	1	3623	3623		13.003	2.9513	1	53925			7749	5941	4449	4543	6130	6130					0.004055996003785367
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3831653715	1	722.383165	721.375889	1.059	0.00076502	6.2994	0.0045506	7.3584	0.0053156	722.3878367784217	33.914	0.38608	33.914	33.842	34.228	0	645	175	1.2351195	0.104646325	1.2351195	252.08147	0	21.357773						1043	17	4	NaN	NaN	NaN	0.69898	1	3624	3624		19.118	4.1054	1	371070			7750	5941	4449	4543	6131	6131					0.004055996003785367
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3831653715	1	722.383165	721.375889	0.50565	0.00036527	7.6466	0.0055238	8.1522	0.005889	722.3875465525356	35.313	0.024128	35.313	35.289	35.313	0	654	52	1.2297117	0.03064096	1.2297117	250.97775	0	6.253662						57	2	2	NaN	NaN	NaN	0.81251	1	3625	3625		7.5404	0.67717	1	4513.1			7751	5941	4449	4543	6132	6132					0.004055996003785367
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3831653715	1	722.383165	721.375889	1.1557	0.00083489	4.6536	0.0033617	5.8093	0.0041966	722.3862953870628	34.468	0.33754	34.467	34.346	34.684	-0.0006485	639	76	1.2387238	0.04505539	1.2372043	252.81708	0	9.195587						351	15	2	NaN	NaN	NaN	0.528	1	3543	3543		29.598	19.547	1	58680			7752	5941	4449	4543	6133	6133					0.004055996003785367
GGKGSGIF	8	Unmodified	_GGKGSGIF_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2;ENST00000567717.1_1_16:1728292-1742376:+|nuORF	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3831653715	1	722.383165	721.375889	1.2999	0.00093904	5.9166	0.0042741	7.2166	0.0052131	722.3871910868249	33.913	0.36205	33.911	33.839	34.201	-0.0012474	645	175	1.2351195	0.10463512	1.2336	252.08147	0	21.355469						990	16	4	NaN	NaN	NaN	0.69898	1	3546	3546		19.118	3.9429	1	364790			7753	5941	4449	4543	6134	6134					0.004055996003785367
GGKIYDLF	8	Unmodified	_GGKIYDLF_					0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.74491076585	2	456.744911	911.475269	0.85036	0.0003884	-9.2196	-0.004211	-8.3692	-0.0038226	456.7406989566532	20.646	0.072237	20.646	20.622	20.694	0	1455	31	0.7413668	0.018555045	0.7413668	301.43427	0	7.544342						53	4	2	NaN	NaN	NaN	0.79607	1	6247	6247		9.746	2.1558	1	4310.7	+		7754	9750	4450	4544	6135	6135					0.015989974944773166
GGKIYDLF	8	Unmodified						0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	456.744911	911.475269	0.85036	0.0003884	-9.2196	-0.004211	-8.3692	-0.0038226	456.7406989566532	20.646	0.072237	20.646	20.622	20.694	0	1455	31	0.7413668	0.018555045	0.7413668	301.43427		7.544342	-0.11356	-0.00031538	-0.00016798	NaN	9.746	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4310.7	+		7755	9750	4450	4544							0.015989974944773166
GGKIYDLF	8	Unmodified						0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	456.744911	911.475269	1.8229	0.0008326	-8.2674	-0.0037761	-6.4445	-0.0029435	456.74041522696416	20.887	0.048246	20.873	20.873	20.921	-0.014088	1452	31	0.74322224	0.018552959	0.7417028	302.18866		7.543518	0.11356	0.00055446	0.00016798	NaN	9.746	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2200.6	+		7756	9750	4450	4544							0.015989974944773166
GGKKAGGH	8	Unmodified	_GGKKAGGH_					0	0	0			REV__ENSG00000164778|ENST00000297375|EN2	REV__ENSG00000164778|ENST00000297375|EN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3896477329001	1	711.389648	710.382371	1.3002	0.00092496	5.3798	0.0038272	6.68	0.0047521	711.3930097701025	55.677	0.096409	55.677	55.677	55.773	0	627	61	1.24593	0.036019325	1.24593	254.36116	0	7.35347						139	5	3	NaN	NaN	NaN	0.84887	1	3438	3438		0.32989	0.32989	1	11544	+		7757	10352	4451	4545	6136	6136					0.015595375517591492
GGKKGGGA	8	Unmodified	_GGKKGGGA_					0	0	0			REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000109061|ENST00000226207|MYH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941001	1	631.3522	630.344923	0.94891	0.0005991	5.8688	0.0037053	6.8177	0.0043044	631.3558808113575	41.137	0.14421	41.137	41.089	41.233	0	759	79	1.1664921	0.04703605	1.1664921	238.71484	0	9.62561						146	7	2	NaN	NaN	NaN	0.84727	1	1462	1462		1.2418	0.91196	1	10997	+		7758	9048	4452	4546	6137	6137					0.01496446286137143
GGKRGGGA	8	Unmodified	_GGKRGGGA_					0	0	0			REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	0.63928	0.00042151	-1.3894	-0.00091611	-0.75013	-0.0004946	659.3571974624871	33.624	0.12068	33.624	33.6	33.721	0	813	91	1.1338868	0.054353833	1.1338868	231.83296	0	11.113113						129	6	2	NaN	NaN	NaN	0.84727	1	2247	2247		1.2418	0	1	11369	+		7759	12311	4453	4547	6138	6138					0.0082296451765842
GGKRGGGA	8	Unmodified	_GGKRGGGA_					0	0	0			REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.2909	0.00085114	-1.6792	-0.0011072	-0.38838	-0.00025608	659.3570898074836	24.791	0.048218	24.779	24.731	24.779	-0.012394	777	136	1.1556307	0.08148277	1.1541113	236.27869	0	16.659866						176	3	2	NaN	NaN	NaN	0.84727	1	2171	2171		1.2418	0	1	16831	+		7760	12311	4453	4547	6139	6139					0.0082296451765842
GGKRGGGA	8	Unmodified	_GGKRGGGA_					0	0	0			REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.7901	0.0011803	-2.1117	-0.0013923	-0.32157	-0.00021203	659.3567372853789	23.079	0.16864	23.065	22.993	23.162	-0.013294	813	169	1.1338868	0.101439	1.1323674	231.83296	0	20.740067						578	8	2	NaN	NaN	NaN	0.84727	1	2172	2172		1.2418	0	1	91831	+		7761	12311	4453	4547	6140	6140					0.0082296451765842
GGKRGGGA	8	Unmodified						0	0	0			REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	0.63928	0.00042151	-1.3894	-0.00091611	-0.75013	-0.0004946	659.3571974624871	33.624	0.12068	33.624	33.6	33.721	0	813	91	1.1338868	0.054353833	1.1338868	231.83296		11.113113	-0.01053	0.00015247	-0.00014681	NaN	1.2418	129	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11369	+		7762	12311	4453	4547							0.0082296451765842
GGKRGGGA	8	Unmodified						0	0	0			REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	REV__ENST00000467713.5_1_3:9982844-9985032:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.7901	0.0011803	-2.1117	-0.0013923	-0.32157	-0.00021203	659.3567372853789	23.079	0.16864	23.065	22.993	23.162	-0.013294	813	169	1.1338868	0.101439	1.1323674	231.83296		20.740067	-0.0069087	-0.00046108	-0.00075972	NaN	1.2418	578	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91831	+		7763	12311	4453	4547							0.0082296451765842
GGLDAIRI	8	Unmodified	_GGLDAIRI_					0	0	0		ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.4781283891999	1	814.478128	813.470852	2.0634	0.0016806	-11.084	-0.0090273	-9.0202	-0.0073467	814.4718396658569	56.996	0.16811	56.996	56.9	57.069	0	369	70	1.4001206	0.041054845	1.4001206	285.1537	0	8.361389						135	8	2	NaN	NaN	NaN	0.8439	1	4936	4936		3.1533	0	1	9763.5			7764	2614	4454	4548	6141	6141					0.056655330715557284
GGLGAFTK	8	Unmodified	_GGLGAFTK_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000163872|ENST00000305135|YEATS2	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.4144654999002	1	750.414465	749.407189	1.5523	0.0011649	6.013	0.0045122	7.5653	0.0056771	750.4186031941434	24.26	0.024132	24.248	24.248	24.272	-0.012749	558	136	1.2873057	0.08077133	1.2857863	262.54913	0	16.47351						143	2	2	NaN	NaN	NaN	0.84651	1	3966	3966		1.6704	0.2308	1	22489			7765	4264	4455	4549	6142	6142					0.0224617263448863
GGLLPELH	8	Unmodified	_GGLLPELH_					0	0	0		ENST00000518881.5_1_8:23425823-23429007:+|nuORF	ENST00000518881.5_1_8:23425823-23429007:+|nuORF	ENST00000518881.5_1_8:23425823-23429007:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.4672293519001	1	835.467229	834.459953	1.2346	0.0010314	3.1017	0.0025914	4.3363	0.0036228	835.4702469409546	35.627	0.072292	35.627	35.603	35.675	0	459	37	1.3464937	0.02148509	1.3464937	274.1172	0	4.3739014						57	4	2	NaN	NaN	NaN	0.82332	1	5194	5194		6.0903	0.62448	1	4225.6			7766	7389	4456	4550	6143	6143					0.03610130697279601
GGLMLAITLL	10	Unmodified	_GGLMLAITLL_					0	0	0		ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.3068209184	2	501.306821	1000.59909	1.4706	0.00073723	-9.933	-0.0049795	-8.4624	-0.0042423	501.3025123840207	22.838	0.072247	22.824	22.8	22.872	-0.01354	1275	40	0.85233563	0.02396655	0.8508162	346.09476	0	9.73172						86	4	3	NaN	NaN	NaN	0.75316	1	8464	8464		4.4131	0	1	7114.2			7767	3222	4457	4551	6144	6144					0.09881332270435905
GGLSAHSK	8	Unmodified	_GGLSAHSK_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3998780682001	1	756.399878	755.392602	1.5829	0.0011973	-9.6996	-0.0073368	-8.1167	-0.0061395	756.3931194041521	29.642	0.14478	29.642	29.618	29.763	0	531	70	1.3034686	0.041291952	1.3034686	265.80783	0	8.42038						232	7	3	NaN	NaN	NaN	0.83582	1	4162	4162		4.4131	0.84331	1	30803			7768	4809	4458	4552	6145	6145					0.0051210048633265615
GGLSGPGELPP	11	Unmodified	_GGLSGPGELPP_					0	0	0		ENST00000418047.5_3_22:30682067-30689721:-|nuORF;ENST00000447976.1_3_22:30681611-30689721:-|nuORF	ENST00000418047.5_3_22:30682067-30689721:-|nuORF	ENST00000418047.5_3_22:30682067-30689721:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5047370702001	1	980.504737	979.497461	1.8702	0.0018338	4.0367	0.003958	5.9069	0.0057917	980.5100481457272	37.648	0.12029	37.651	37.603	37.723	0.0028229	243	55	1.4749115	0.031995296	1.473392	299.53894	0	6.497925						101	6	2	NaN	NaN	NaN	0.63005	1	7702	7702		12.049	0.95801	1	5771.6			7769	6894	4459	4553	6146	6146					0.006891771722393969
GGLSKSSS	8	Unmodified	_GGLSKSSS_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000484420.1_1_1:3731968-3732952:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3679092378001	1	722.367909	721.360633	1.248	0.00090149	4.535	0.003276	5.783	0.0041774	722.3711228229005	29.329	0.19304	29.329	29.28	29.474	0	603	70	1.2603331	0.04139793	1.2603331	257.2275	0	8.449097						372	9	3	NaN	NaN	NaN	0.84512	1	3619	3619		2.4615	1.2197	1	69022			7770	2070	4460	4554	6147	6147					-0.011193119874747026
GGLSKSSS	8	Unmodified						0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000484420.1_1_1:3731968-3732952:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.367909	721.360633	1.1269	0.00081404	5.4469	0.0039347	6.5738	0.0047487	722.3717622858846	29.328	0.28953	29.32	29.248	29.537	-0.0077209	600	94	1.2621325	0.05582106	1.2606131	257.5948		11.392792	-0.0042606	0.00033196	0.00014004	NaN	2.4615	435	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73781			7771	2070	4460	4554							-0.011193119874747026
GGLTGLLVG	9	Unmodified	_GGLTGLLVG_					0	0	0		nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4719803788001	1	786.47198	785.464704	1.5086	0.0011865	-0.44716	-0.00035168	1.0614	0.00083479	786.4716045280401	27.228	0.096519	27.218	27.194	27.291	-0.010124	483	43	1.3321642	0.025087357	1.3306447	271.47394	0	5.1123962						77	5	2	NaN	NaN	NaN	0.24994	1	4490	4490		22.126	1.5709	1	7652.7			7772	2814	4461	4555	6148	6148					0.0633901484004582
GGLTQGGL	8	Unmodified	_GGLTQGGL_					0	0	0		ENST00000445297.5_1_1:3385136-3385322:+|nuORF	ENST00000445297.5_1_1:3385136-3385322:+|nuORF	ENST00000445297.5_1_1:3385136-3385322:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.3780799936002	1	702.37808	701.370804	0.80841	0.00056781	6.043	0.0042445	6.8514	0.0048123	702.3818300232643	30.148	0.14479	30.142	30.094	30.238	-0.0064106	624	49	1.247731	0.028812408	1.2462115	254.79076	0	5.8835907						104	7	2	NaN	NaN	NaN	0.78967	1	3183	3183		10.605	0	1	8395.8			7773	7018	4462	4556	6149	6149					0.008172957377723833
GGLYATFD	8	Unmodified	_GGLYATFD_					0	0	0			REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.19779339774993	2	422.197793	842.381034	1.0286	0.00043428	-1.5902	-0.00067136	-0.56154	-0.00023708	422.1972188363241	30.849	0.072369	30.849	30.825	30.897	0	1383	28	0.7858409	0.016653419	0.7858409	319.9058	0	6.7793884						39	4	2	NaN	NaN	NaN	0.84727	1	5291	5291		1.2418	0	1	3576.4	+		7774	13523	4463	4557	6150	6150					-0.04646141327680198
GGLYATFD	8	Unmodified						0	0	0			REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	422.197793	842.381034	1.0286	0.00043428	-1.5902	-0.00067136	-0.56154	-0.00023708	422.1972188363241	30.849	0.072369	30.849	30.825	30.897	0	1383	28	0.7858409	0.016653419	0.7858409	319.9058		6.7793884	-0.057263	-0.00028562	0.00075972	NaN	1.2418	39	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3576.4	+		7775	13523	4463	4557							-0.04646141327680198
GGLYATFD	8	Unmodified						0	0	0			REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	REV__tr|U7SUT8|U7SUT8_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01002PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	422.197793	842.381034	1.5029	0.0006345	-0.70173	-0.00029627	0.80113	0.00033824	422.19816100191247	30.969	0.048281	30.964	30.94	30.988	-0.0050716	1383	34	0.7858409	0.020356357	0.7843215	319.9058		8.286804	0.057263	0.00046456	-0.00075972	NaN	1.2418	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3661.7	+		7776	13523	4463	4557							-0.04646141327680198
GGMLALGG	8	Unmodified	_GGMLALGG_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021002	1	675.349422	674.342146	1.2022	0.00081189	5.0561	0.0034146	6.2582	0.0042265	675.3526685360713	24.092	0.2895	24.079	23.958	24.248	-0.012749	756	142	1.1683017	0.08500409	1.1667823	238.75407	0	17.371414						727	13	3	NaN	NaN	NaN	0.84651	1	2628	2628		1.6704	0	1	81423	+		7777	9137	4464	4558	6151	6151					-0.008051451630080919
GGNAKAAA	8	Unmodified	_GGNAKAAA_					0	0	0			REV__ENSG00000183186|ENST00000332235|C2CD4C	REV__ENSG00000183186|ENST00000332235|C2CD4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3471142162	1	659.347114	658.339838	0.83003	0.00054728	-6.3703	-0.0042002	-5.5402	-0.0036529	659.3436496848664	41.45	0.26477	41.45	41.353	41.618	0	1206	67	0.894683	0.04046464	0.894683	182.92575	0	8.273346						280	12	2	NaN	NaN	NaN	0.84887	1	2238	2238		0.32989	0	1	27329	+		7778	10886	4465	4559	6152	6152					-0.002998575764877387
GGPAGGRPGP	10	Unmodified	_GGPAGGRPGP_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	822.4216761428	1	822.421676	821.4144	1.182	0.00097207	4.764	0.003918	5.946	0.0048901	822.4251752030863	27.253	0.1448	27.242	27.194	27.339	-0.010126	453	55	1.3500742	0.03222072	1.3485547	274.9168	0	6.561157						204	7	3	NaN	NaN	NaN	0.59589	1	4926	4926		15.175	6.0522	1	28431	+		7779	10657	4466	4560	6153	6153					-0.003450947651003844
GGPAGGRPGP	10	Unmodified						0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.421676	821.4144	1.182	0.00097207	4.764	0.003918	5.946	0.0048901	822.4251752030863	27.253	0.1448	27.242	27.194	27.339	-0.010126	453	55	1.3500742	0.03222072	1.3485547	274.9168		6.561157	0.0066315	0.0007846	-0.00075972	NaN	15.175	204	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28431	+		7780	10657	4466	4560							-0.003450947651003844
GGPAPELL	8	Unmodified	_GGPAPELL_					0	0	0		ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.4141311489001	1	753.414131	752.406855	1.5774	0.0011885	4.5083	0.0033966	6.0858	0.0045851	753.4179121291037	29.739	0.12066	29.739	29.691	29.811	0	501	76	1.3214091	0.044853806	1.3214091	269.48532	0	9.1474						184	6	2	NaN	NaN	NaN	0.83849	1	4105	4105		4.0537	0	1	16866			7781	6481	4467	4561	6154	6154					0.020747529146206034
GGPASDVL	8	Unmodified	_GGPASDVL_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3620955784	1	715.362096	714.354819	1.4489	0.0010365	6.6903	0.004786	8.1392	0.0058225	715.3668149873437	28.146	0.14479	28.146	28.122	28.267	0	603	58	1.2603331	0.03420186	1.2603331	257.27454	0	6.9817047						144	7	2	NaN	NaN	NaN	0.79379	1	3508	3508		10.052	3.9612	1	13375			7782	7593	4468	4562	6155	6155					-0.01378410499137317
GGPASDVL	8	Unmodified						0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.362096	714.354819	0.93141	0.0006663	6.5443	0.0046816	7.4757	0.0053478	715.3667752873316	28.145	0.16896	28.137	28.112	28.281	-0.0089798	600	52	1.2621325	0.030591846	1.2606131	257.64188		6.2447968	-0.0048472	-2.7597E-05	0.00014004	NaN	10.052	161	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15087			7783	7593	4468	4562							-0.01378410499137317
GGPCPAGL	8	Unmodified	_GGPCPAGL_					0	0	0		chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.2932	0.00043473	2.9281	0.0009843	4.2213	0.001419	336.1650192343098	41.28	0.096302	41.288	41.288	41.384	0.0082588	1518	58	0.7023569	0.035333037	0.70083743	287.09293	0	14.442627						106	5	3	NaN	NaN	NaN	0.84876	1	2518	2518		0.39566	0	1	9285.4			7784	146	4469	4563	6156	6156					-0.03749718197116181
GGPCPAGL	8	Unmodified						0	0	0		chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	chr5:132210523-132217197|116|36.27|0.44|6.36|-|1|P4HA2,P4HA2|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	336.162699	670.310846	1.0933	0.00036751	8.4337	0.0028351	9.5269	0.0032026	336.16570911958155	41.041	0.096104	41.041	41.041	41.137	0	1521	67	0.70049703	0.04092306	0.70049703	286.33267		16.7276	-0.12358	0.00093788	-0.0001702	NaN	0.39566	148	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27807			7785	146	4469	4563							-0.03749718197116181
GGPDVLPH	8	Unmodified	_GGPDVLPH_					0	0	0			REV__ENST00000303375.9_1_17:60770648-60770867:+|nuORF	REV__ENST00000303375.9_1_17:60770648-60770867:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.4046290951	1	791.404629	790.397353	1.9632	0.0015537	-8.8663	-0.0070168	-6.903	-0.0054631	791.3984697040461	29.884	0.1448	29.884	29.836	29.98	0	477	46	1.3357477	0.02687788	1.3357477	272.17508	0	5.476715						105	7	2	NaN	NaN	NaN	0.82797	1	4629	4629		5.4659	1.8926	1	9059.8	+		7786	11666	4470	4564	6157	6157					-0.006230153709225306
GGPDVLPH	8	Unmodified						0	0	0			REV__ENST00000303375.9_1_17:60770648-60770867:+|nuORF	REV__ENST00000303375.9_1_17:60770648-60770867:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	791.404629	790.397353	1.9632	0.0015537	-8.8663	-0.0070168	-6.903	-0.0054631	791.3984697040461	29.884	0.1448	29.884	29.836	29.98	0	477	46	1.3357477	0.02687788	1.3357477	272.17508		5.476715	0.0039968	0.00046246	0.00075972	NaN	5.4659	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9059.8	+		7787	11666	4470	4564							-0.006230153709225306
GGPGGDPQL	9	Unmodified	_GGPGGDPQL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19304237085004	2	399.193042	796.371532	0.50783	0.00020272	5.3365	0.0021303	5.8443	0.002333	399.1956655970513	33.407	0.16891	33.407	33.383	33.552	0	1401	40	0.77473325	0.024075806	0.77473325	315.67563	0	9.809998						204	8	3	NaN	NaN	NaN	0.66822	1	4704	4704		1.9246	0.22244	1	27131			7788	6056	4471	4565	6158	6158					-0.034799096131791885
GGPGLHKQ	8	Unmodified	_GGPGLHKQ_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.2193945071	2	397.219395	792.424236	-0.50652	-0.0002012	0.59495	0.00023633	0.088436	3.5128E-05	397.21968429558996	53.778	0.19256	53.777	53.753	53.945	-0.00059128	1404	55	0.77288127	0.03334111	0.7713618	314.94757	0	13.586426						124	9	2	NaN	NaN	NaN	0.84876	1	4573	4573		0.39566	0	1	34082			7789	3488	4472	4566	6159	6159					0.019720932402719882
GGPGPCSD	8	Unmodified	_GGPGPCSD_					0	0	0		ENST00000514248.1_1_4:2272662-2273465:-|nuORF	ENST00000514248.1_1_4:2272662-2273465:-|nuORF	ENST00000514248.1_1_4:2272662-2273465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.2559159474	1	689.255916	688.248639	1.8464	0.0012727	-0.50627	-0.00034895	1.3401	0.0009237	689.2556626802735	26.191	0.12069	26.18	26.107	26.228	-0.011137	732	85	1.1827712	0.050632477	1.1812518	241.61395	0	10.343094						175	6	2	NaN	NaN	NaN	0.84887	1	2916	2916		0.32989	0	1	20242			7790	7369	4473	4567	6160	6160					-0.10795489336112496
GGPGPGPP	8	Unmodified	_GGPGPGPP_					0	0	0			REV__ENSG00000186897|ENST00000334221|C1QL4	REV__ENSG00000186897|ENST00000334221|C1QL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	318.16101396095	2	318.161014	634.307475	-0.041415	-1.3177E-05	8.1905	0.0026059	8.1491	0.0025927	318.16364602304446	47.49	0.14372	47.498	47.426	47.57	0.007412	1524	70	0.698637	0.04276228	0.69711757	285.89536	0	17.499146						152	7	2	NaN	NaN	NaN	0.84651	1	1497	1497		1.6704	0	1	16780	+		7791	11012	4474	4568	6161	6161					-0.02430644979472163
GGPGPKAQ	8	Unmodified	_GGPGPKAQ_					0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3784143446001	1	711.378414	710.371138	1.0735	0.0007637	-3.6871	-0.0026229	-2.6136	-0.0018592	711.3757738041971	36.615	0.14461	36.615	36.519	36.663	0	696	58	1.2044523	0.034315467	1.2044523	245.89346	0	7.0056458						90	7	2	NaN	NaN	NaN	0.84692	1	3430	3430		1.4396	0	1	7195.5	+		7792	10896	4475	4569	6162	6162					0.004367154576129906
GGPGPKAQ	8	Unmodified						0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.378414	710.371138	1.0735	0.0007637	-3.6871	-0.0026229	-2.6136	-0.0018592	711.3757738041971	36.615	0.14461	36.615	36.519	36.663	0	696	58	1.2044523	0.034315467	1.2044523	245.89346		7.0056458	0.012189	0.00026844	0.00075972	NaN	1.4396	90	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7195.5	+		7793	10896	4475	4569							0.004367154576129906
GGPIEAVSTI	10	Unmodified	_GGPIEAVSTI_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1;ENST00000548158.1_1_12:50393384-50398020:-|nuORF	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.25838228185006	2	472.258382	942.502212	0.89121	0.00042088	-1.4673	-0.00069294	-0.57608	-0.00027206	472.25829522480865	15.748	0.11974	15.735	15.711	15.831	-0.012611	1365	55	0.7969414	0.033283353	0.79542196	323.87204	0	13.526154						139	6	2	NaN	NaN	NaN	0.62764	1	6743	6743		13.003	3.8796	1	17260			7794	4105	4476	4570	6163	6163					0.028660613150123027
GGPLGGGPT	9	Unmodified	_GGPLGGGPT_					0	0	0			REV__ENST00000588238.1_1_19:4447432-4447750:-|nuORF	REV__ENST00000588238.1_1_19:4447432-4447750:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3624299294	1	712.36243	711.355153	1.3307	0.00094796	-5.8164	-0.0041434	-4.4857	-0.0031954	712.3584273311305	55.028	0.048008	55.028	55.028	55.076	0	492	55	1.3267875	0.03227234	1.3267875	270.86157	0	6.5883484						48	3	2	NaN	NaN	NaN	0.6762	1	3451	3451		1.2418	0.84618	1	7215.9	+		7795	12900	4477	4571	6164	6164					-0.012069907792920276
GGPLKGGGL	9	Unmodified	_GGPLKGGGL_					0	0	0			REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.4410146014003	1	755.441015	754.433738	-0.18256	-0.00013791	2.5482	0.001925	2.3656	0.0017871	755.4429761804654	59.082	0.16807	59.082	58.938	59.106	-0.00045395	582	49	1.2729256	0.028772473	1.2714062	259.58524	0	5.8674927						123	8	2	NaN	NaN	NaN	0.6907	1	4073	4073		0	0	1	13160	+		7796	11693	4478	4572	6165	6165					0.04669861525826491
GGPPHPGM	8	Unmodified	_GGPPHPGM_					0	0	0		ENST00000488550.5_1_2:66798235-66798658:+|nuORF;nc|ENSG00000143995|O00470-2|MEIS1	ENST00000488550.5_1_2:66798235-66798658:+|nuORF	ENST00000488550.5_1_2:66798235-66798658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3399203483001	1	749.33992	748.332644	0.47883	0.00035881	2.0177	0.001512	2.4966	0.0018708	749.342483148333	44.518	0.1201	44.529	44.505	44.626	0.011646	678	46	1.2152823	0.027068019	1.213763	247.86623	0	5.5207214						119	6	3	NaN	NaN	NaN	0.84876	1	3939	3939		0.39566	0	1	11810			7797	7251	4479	4573	6166	6166					-0.051589134485539034
GGPRGGAF	8	Unmodified	_GGPRGGAF_					0	0	0		ENST00000409939.7_1_16:30381523-30381583:-|nuORF	ENST00000409939.7_1_16:30381523-30381583:-|nuORF	ENST00000409939.7_1_16:30381523-30381583:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.3630986314	1	718.363099	717.355822	1.5106	0.0010852	-1.0709	-0.0007693	0.43973	0.00031588	718.3627034190662	19.828	0.16828	19.828	19.78	19.948	0	603	52	1.2603331	0.030595064	1.2603331	257.2543	0	6.2449646						139	8	2	NaN	NaN	NaN	0.84692	1	3551	3551		1.4396	1.0439	1	10890			7798	6866	4480	4574	6167	6167					-0.014161513395833936
GGPRRSTRL	9	Unmodified	_GGPRRSTRL_					0	0	0		ENST00000549441.6_1_12:49740721-49740880:+|nuORF	ENST00000549441.6_1_12:49740721-49740880:+|nuORF	ENST00000549441.6_1_12:49740721-49740880:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.2939564337	2	500.293956	998.57336	1.7752	0.00088813	-1.7229	-0.00086197	0.052286	2.6158E-05	500.29351863406566	21.85	0.096384	21.85	21.826	21.922	0	1302	49	0.8357362	0.029518008	0.8357362	339.3638	0	11.986237						90	5	2	NaN	NaN	NaN	0.55027	1	8536	8536		7.5404	0.67717	1	10969			7799	7536	4481	4575	6168	6168					0.07401618863025305
GGPRRSTRL	9	Unmodified						0	0	0		ENST00000549441.6_1_12:49740721-49740880:+|nuORF	ENST00000549441.6_1_12:49740721-49740880:+|nuORF	ENST00000549441.6_1_12:49740721-49740880:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.293956	998.57336	1.1905	0.00059559	-1.1072	-0.00055394	0.08325	4.1649E-05	500.29371940338774	21.874	0.096329	21.86	21.812	21.908	-0.013895	1296	67	0.8394264	0.04060048	0.83790696	340.86224		16.48645	0.0050213	0.00027894	0.0010854	NaN	7.5404	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11298			7800	7536	4481	4575							0.07401618863025305
GGPTNECL	8	Unmodified	_GGPTNECL_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.3399799278001	1	790.33998	789.332703	1.6923	0.0013375	-0.19837	-0.00015678	1.4939	0.0011807	790.339916918284	27.518	0.072407	27.508	27.484	27.557	-0.009552	546	40	1.294491	0.023343801	1.2929716	263.77457	0	4.756714						75	4	2	NaN	NaN	NaN	0.76633	1	4530	4530		13.737	0	1	5118.6	+		7801	9975	4482	4576	6169	6169					-0.0703895823920675
GGPTPDFG	8	Unmodified	_GGPTPDFG_					0	0	0		ENST00000464842.1_1_22:38965365-38966062:-|nuORF	ENST00000464842.1_1_22:38965365-38966062:-|nuORF	ENST00000464842.1_1_22:38965365-38966062:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3307954500001	1	747.330795	746.323519	1.3878	0.0010371	-7.9259	-0.0059233	-6.5382	-0.0048862	747.3262839652878	28.435	0.12069	28.426	28.354	28.474	-0.0089798	603	61	1.2603331	0.0359962	1.2588136	257.06714	0	7.3420715						139	6	3	NaN	NaN	NaN	0.84455	1	3912	3912		2.7852	1.5433	1	11194			7802	7103	4483	4577	6170	6170					-0.05978983533225346
GGQGGADT	8	Unmodified	_GGQGGADT_					0	0	0		ENST00000325568.9_2_16:3119118-3119334:+|nuORF	ENST00000325568.9_2_16:3119118-3119334:+|nuORF	ENST00000325568.9_2_16:3119118-3119334:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	331.6406426595999	2	331.640643	661.266732	1.4181	0.00047031	3.3226	0.0011019	4.7408	0.0015722	331.64285364348353	30.656	0.072411	30.656	30.608	30.68	0	1521	58	0.70049703	0.03535223	0.70049703	286.4108	0	14.454407						69	4	2	NaN	NaN	NaN	0.84756	1	2346	2346		1.072	0.14616	1	3960.7			7803	6493	4484	4578	6171	6171					-0.07745031089768872
GGQGGAGH	8	Unmodified	_GGQGGAGH_					0	0	0			REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.2797629324999	1	640.279763	639.272486	1.8524	0.0011861	-9.9687	-0.0063828	-8.1163	-0.0051967	640.273439989963	28.412	0.16895	28.412	28.363	28.532	0	1422	43	0.7617651	0.025946021	0.7617651	155.84404	0	5.3081055						93	8	2	NaN	NaN	NaN	0.84945	1	1716	1716		0	0	1	8285.6	+		7804	12300	4485	4579	6172	6172					-0.06157887787446725
GGQGGAGH	8	Unmodified						0	0	0			REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	640.279763	639.272486	1.8524	0.0011861	-9.9687	-0.0063828	-8.1163	-0.0051967	640.273439989963	28.412	0.16895	28.412	28.363	28.532	0	1422	43	0.7617651	0.025946021	0.7617651	155.84404		5.3081055	-0.019619	0.00059204	0.00075972	NaN	0	93	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8285.6	+		7805	12300	4485	4579							-0.06157887787446725
GGQGGAGH	8	Unmodified						0	0	0			REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	640.279763	639.272486	1.7559	0.0011243	-11.742	-0.007518	-9.9858	-0.0063937	640.2724946631706	28.459	0.09655	28.451	28.403	28.499	-0.0083504	1422	40	0.7617651	0.024091423	0.7602457	155.84404		4.9286957	0.019619	-0.00054315	-0.00075972	NaN	0	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7986.4	+		7806	12300	4485	4579							-0.06157887787446725
GGQGPPPV	8	Unmodified	_GGQGPPPV_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073	1	708.367515	707.360239	1.2281	0.00086993	8.0183	0.0056799	9.2464	0.0065499	708.3734082504853	38.273	0.12021	38.276	38.204	38.325	0.0034218	729	49	1.184579	0.028920412	1.1830596	241.85568	0	5.9046936						131	6	2	NaN	NaN	NaN	0.84692	1	3305	3305		1.4396	1.0439	1	12370			7807	335	4486	4580	6173	6173					-0.0051468691667651
GGRCLGAA	8	Unmodified	_GGRCLGAA_					0	0	0			REV__ENST00000220597.4_1_8:81905502-82024007:-|nuORF	REV__ENST00000220597.4_1_8:81905502-82024007:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3508193856	1	704.350819	703.343543	0.63817	0.0004495	-7.1249	-0.0050185	-6.4868	-0.004569	704.3455722564258	40.897	0.096073	40.897	40.849	40.945	0	645	37	1.2351195	0.0216254	1.2351195	252.20197	0	4.415756						59	5	2	NaN	NaN	NaN	0.84727	1	3268	3268		1.2418	0	1	3291.7	+		7808	11468	4487	4581	6174	6174					-0.019995110742797806
GGRGGGHA	8	Unmodified	_GGRGGGHA_					0	0	0		AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964491999	1	668.322296	667.31502	0.84237	0.00056298	-4.7208	-0.003155	-3.8784	-0.002592	668.3197178573113	33.456	0.072399	33.456	33.383	33.456	0	1125	70	0.9442611	0.042146683	0.9442611	193.00958	0	8.614899						91	4	2	NaN	NaN	NaN	0.84945	1	2509	2509		0	0	1	6731.8			7809	20	4488	4582	6175	6175					-0.031944926592132106
GGRGGRLV	8	Unmodified	_GGRGGRLV_					0	0	0			REV__ENST00000456392.1_1_X:65176624-65176924:-|nuORF	REV__ENST00000456392.1_1_X:65176624-65176924:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4583960001	1	771.458396	770.45112	-0.071361	-5.5052E-05	-5.6433	-0.0043536	-5.7147	-0.0044087	771.4539666410899	56.011	0.12005	56.01	55.986	56.106	-0.00059128	540	133	1.2980826	0.07909024	1.2965631	264.61722	0	16.122742						236	6	4	NaN	NaN	NaN	0.84887	1	4289	4289		0.32989	0	1	90427	+		7810	12248	4489	4583	6176	6176					0.056712018514645024
GGSAHDVL	8	Unmodified	_GGSAHDVL_					0	0	0		chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3682435888	1	755.368244	754.360967	1.3599	0.0010272	-4.3272	-0.0032687	-2.9673	-0.0022414	755.3647503326252	22.115	0.16875	22.101	22.029	22.197	-0.013731	555	85	1.2891023	0.050319433	1.2875829	262.88458	0	10.261566						277	8	2	NaN	NaN	NaN	0.80071	1	4062	4062		9.1232	0	1	29454			7811	137	4490	4584	6177	6177					-0.02603892267620722
GGSAHDVL	8	Unmodified						0	0	0		chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	chr19:51380262-51380505|171|19.57|0.19|6.68|-|1|LIM2,LIM2|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.368244	754.360967	1.7502	0.001322	-4.4704	-0.0033768	-2.7202	-0.0020547	755.3651424702896	22.115	0.1689	22.115	22.067	22.236	0	555	82	1.2891023	0.048524976	1.2891023	262.88458		9.895599	0.0070479	-3.7785E-05	0.00075972	NaN	9.1232	283	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29615			7812	137	4490	4584							-0.02603892267620722
GGSASGKT	8	Unmodified	_GGSASGKT_					0	0	0		ENST00000492660.1_1_20:62577468-62577618:-|nuORF;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-2|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	ENST00000492660.1_1_20:62577468-62577618:-|nuORF	ENST00000492660.1_1_20:62577468-62577618:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.3260444230999	1	664.326044	663.318768	0.82043	0.00054503	-4.7267	-0.0031401	-3.9062	-0.002595	664.3231305535293	39.694	0.14469	39.694	39.694	39.839	0	768	76	1.1610622	0.045253634	1.1610622	237.35306	0	9.251083						223	7	2	NaN	NaN	NaN	0.84887	1	2411	2411		0.32989	0	1	19908			7813	5766	4491	4585	6178	6178					-0.026358676760082744
GGSEAGRS	8	Unmodified	_GGSEAGRS_					0	0	0			REV__nc|ENSG00000183784|Q5T8R8|DOCK8-AS1	REV__nc|ENSG00000183784|Q5T8R8|DOCK8-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.3271070556	1	720.327107	719.319831	1.4701	0.0010589	-2.6868	-0.0019354	-1.2167	-0.00087643	720.3247115377758	28.243	0.12068	28.243	28.194	28.315	0	615	55	1.2531329	0.03241384	1.2531329	255.77159	0	6.6158752						103	6	2	NaN	NaN	NaN	0.84692	1	3578	3578		1.4396	0	1	8998.9	+		7814	13192	4492	4586	6179	6179					-0.051056533071005106
GGSGASNV	8	Unmodified	_GGSGASNV_					0	0	0			REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	324.65101038065	2	324.65101	647.287468	1.7746	0.00057614	3.0645	0.00099489	4.8391	0.001571	324.6524395872309	38.177	0.16825	38.18	38.084	38.252	0.0034218	1536	85	0.69119483	0.05210662	0.6896754	282.73065	0	21.314026						249	8	2	NaN	NaN	NaN	0.84692	1	1900	1900		1.4396	0.19772	1	22105	+		7815	11699	4493	4587	6180	6180					-0.05028440710088944
GGSGASNV	8	Unmodified						0	0	0			REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	324.65101	647.287468	0.85928	0.00027897	5.0849	0.0016508	5.9442	0.0019298	324.6530067761326	38.155	0.21623	38.155	38.059	38.275	0	1533	73	0.6930556	0.04467249	0.6930556	283.49182		18.273102	-0.012536	0.00058531	0.0016901	NaN	1.4396	278	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22229	+		7816	11699	4493	4587							-0.05028440710088944
GGSGASNV	8	Unmodified						0	0	0			REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	324.65101	647.287468	1.7746	0.00057614	3.0645	0.00099489	4.8391	0.001571	324.6524395872309	38.177	0.16825	38.18	38.084	38.252	0.0034218	1536	85	0.69119483	0.05210662	0.6896754	282.73065		21.314026	0.012536	-0.00072658	-0.0016901	NaN	1.4396	249	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22105	+		7817	11699	4493	4587							-0.05028440710088944
GGSGGVHP	8	Unmodified	_GGSGGVHP_					0	0	0			REV__ENST00000371851.1_1_9:136857425-136857656:-|nuORF	REV__ENST00000371851.1_1_9:136857425-136857656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3158140878	1	667.315814	666.308538	1.4451	0.00096436	-5.7286	-0.0038228	-4.2834	-0.0028584	667.3120016528046	20.742	0.26517	20.742	20.646	20.911	0	753	112	1.1701111	0.06698251	1.1701111	239.1812	0	13.691849						535	12	2	NaN	NaN	NaN	0.84727	1	2481	2481		1.2418	0.84618	1	49490	+		7818	11905	4494	4588	6181	6181					-0.03796430610577772
GGSGVCKV	8	Unmodified	_GGSGVCKV_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615	1	706.355236	705.34796	0.5467	0.00038617	5.2822	0.0037311	5.8289	0.0041173	706.358845158224	33.986	0.2413	33.986	33.938	34.179	0	768	64	1.1610622	0.03800893	1.1610622	237.06712	0	7.7607117						220	11	2	NaN	NaN	NaN	0.84727	1	3321	3321		1.2418	0	1	24055	+		7819	8957	4495	4589	6182	6182					-0.016500466513662104
GGSLTHSR	8	Unmodified	_GGSLTHSR_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.71193361575	2	407.711934	813.409314	1.1675	0.00047602	5.1047	0.0020813	6.2723	0.0025573	407.7139381294363	14.981	0.096093	14.981	14.957	15.053	0	1434	79	0.75435036	0.04821688	0.75435036	307.2615	0	19.639648						110	5	2	NaN	NaN	NaN	0.81756	1	4934	4934		6.8632	0	1	7362.2	+		7820	10980	4496	4590	6183	6183					-0.004853986277112199
GGSLTLAPPLL	11	Unmodified	_GGSLTLAPPLL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.81332468205	2	519.813325	1037.6121	1.0644	0.00055327	7.1042	0.0036928	8.1685	0.0042461	519.8167463618009	34.927	0.21696	34.927	34.831	35.048	0	1227	49	0.88180584	0.029435158	0.88180584	357.8879	0	11.946503						158	10	2	NaN	NaN	NaN	0.72685	1	10114	10114		5.6942	0.2283	1	13584			7821	4901	4497	4591	6184	6184					0.09479486654186076
GGSPAAPR	8	Unmodified	_GGSPAAPR_					0	0	0			REV__SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|8|1|sense	REV__SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|8|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	712.3736633177	1	712.373663	711.366387	1.0791	0.00076869	2.7203	0.0019378	3.7993	0.0027065	712.3755828449312	30.124	0.096535	30.118	30.094	30.19	-0.0064106	1047	40	0.99186665	0.02377075	0.9903472	202.48792	0	4.8527527						74	5	2	NaN	NaN	NaN	0.84727	1	3387	3387		1.2418	0	1	6211.5	+		7822	13358	4498	4592	6185	6185					-0.0008416868515723763
GGSQGGGH	8	Unmodified	_GGSQGGGH_					0	0	0			REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF	REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2746775546001	1	656.274678	655.267401	1.7792	0.0011677	6.1545	0.004039	7.9337	0.0052067	656.2781122732667	23.393	0.04825	23.393	23.393	23.441	0	1134	31	0.9387595	0.018341422	0.9387595	191.95584	0	3.7504272						41	3	2	NaN	NaN	NaN	0.84876	1	2171	2171		0.39566	0.065779	1	2887.7	+		7823	11494	4499	4593	6186	6186					-0.07402191650044188
GGSQGGGH	8	Unmodified						0	0	0			REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF	REV__ENST00000239944.6_1_3:150264054-150264312:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	656.274678	655.267401	1.7792	0.0011677	6.1545	0.004039	7.9337	0.0052067	656.2781122732667	23.393	0.04825	23.393	23.393	23.441	0	1134	31	0.9387595	0.018341422	0.9387595	191.95584		3.7504272	0	0	0	NaN	0.39566	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2887.7	+		7824	11494	4499	4593							-0.07402191650044188
GGSRPEFVKL	10	Unmodified	_GGSRPEFVKL_					0	0	0		sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.6051198168	1	1089.60512	1088.59784	1.2228	0.0013324	6.6424	0.0072376	7.8652	0.0085699	1089.6115763177763	35.072	0.072388	35.072	35.048	35.12	0	138	49	1.5369828	0.028322816	1.5369828	311.7106	0	5.7440796						86	4	2	NaN	NaN	NaN	0.77967	1	12344	12344		0.59723	0.20156	1	6504.2			7825	13685	4500	4594	6187	6187					0.057088342259021374
GGSSSTNL	8	Unmodified	_GGSSSTNL_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3315237315002	1	722.331524	721.324247	2.0627	0.0014899	5.4224	0.0039168	7.485	0.0054067	722.3354166474871	22.79	0.31329	22.79	22.742	23.055	0	615	178	1.2531329	0.10642207	1.2531329	255.75827	0	21.72023						930	14	4	NaN	NaN	NaN	0.77489	1	3607	3607		12.588	0	1	357190	+		7826	10967	4501	4595	6188	6188					-0.04756188884175572
GGSSSTNL	8	Unmodified	_GGSSSTNL_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3315237315002	1	722.331524	721.324247	1.8267	0.0013195	5.4543	0.0039398	7.281	0.0052593	722.3356970949322	22.79	0.38551	22.776	22.728	23.113	-0.01354	612	181	1.2549332	0.10823166	1.2534138	256.1257	0	22.089554						941	17	3	NaN	NaN	NaN	0.72043	1	3531	3531		17.78	0	1	342700	+		7827	10967	4501	4595	6189	6189					-0.04756188884175572
GGSSSTNL	8	Unmodified						0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.331524	721.324247	2.0627	0.0014899	5.4224	0.0039168	7.485	0.0054067	722.3354166474871	22.79	0.31329	22.79	22.742	23.055	0	615	178	1.2531329	0.10642207	1.2531329	255.75827		21.72023	0.0070875	-9.941E-06	-0.00014043	NaN	17.78	930	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357190	+		7828	10967	4501	4595							-0.04756188884175572
GGSSSTNL	8	Unmodified						0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.331524	721.324247	1.8267	0.0013195	5.4543	0.0039398	7.281	0.0052593	722.3356970949322	22.79	0.38551	22.776	22.728	23.113	-0.01354	612	181	1.2549332	0.10823166	1.2534138	256.1257		22.089554	-0.0070875	1.3096E-05	0.00014043	NaN	17.78	941	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342700	+		7829	10967	4501	4595							-0.04756188884175572
GGSVGARP	8	Unmodified	_GGSVGARP_					0	0	0			REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.3736633177001	1	700.373663	699.366387	1.1918	0.00083473	5.0478	0.0035354	6.2397	0.0043701	700.3773893176233	56.373	0.1199	56.373	56.301	56.421	0	588	49	1.2693287	0.028781652	1.2693287	259.2153	0	5.8776093						109	6	2	NaN	NaN	NaN	0.84727	1	3212	3212		1.2418	0	1	10456	+		7830	11486	4502	4596	6190	6190					0.004678313148588131
GGSVGARP	8	Unmodified						0	0	0			REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	700.373663	699.366387	1.1918	0.00083473	5.0478	0.0035354	6.2397	0.0043701	700.3773893176233	56.373	0.1199	56.373	56.301	56.421	0	588	49	1.2693287	0.028781652	1.2693287	259.2153		5.8776093	-0.01071	-0.0015108	0.0016591	NaN	1.2418	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10456	+		7831	11486	4502	4596							0.004678313148588131
GGSVGARP	8	Unmodified						0	0	0			REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	REV__ENST00000234111.8_1_2:10588250-10588409:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	700.373663	699.366387	-0.74668	-0.00052295	9.5442	0.0066845	8.7975	0.0061615	700.3803658366704	56.395	0.1438	56.394	56.346	56.49	-0.00056458	591	61	1.26753	0.03598082	1.2660105	258.84796		7.347809	0.01071	0.0016383	-0.0016591	NaN	1.2418	129	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11431	+		7832	11486	4502	4596							0.004678313148588131
GGVFKGGG	8	Unmodified	_GGVFKGGG_					0	0	0		ENST00000539735.5_1_12:6833379-6833820:+|nuORF	ENST00000539735.5_1_12:6833379-6833820:+|nuORF	ENST00000539735.5_1_12:6833379-6833820:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3569506210002	1	678.356951	677.349674	1.166	0.00079096	3.7619	0.0025519	4.9279	0.0033429	678.3603975289975	27.904	0.096558	27.895	27.846	27.943	-0.009552	1062	55	0.9827221	0.032943487	0.98120266	200.8113	0	6.731735						93	5	2	NaN	NaN	NaN	0.84945	1	2706	2706		0	0	1	6381.3			7833	7492	4503	4597	6191	6191					-0.0019066957107725102
GGVGLVLR	8	Unmodified	_GGVGLVLR_					0	0	0			REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4882991450002	1	770.488299	769.481023	-0.10197	-7.8566E-05	4.9833	0.0038396	4.8813	0.003761	770.4929077525026	55.458	0.16806	55.458	55.362	55.53	-0.00061798	489	49	1.3285799	0.028680325	1.3270605	270.8401	0	5.84671						142	8	2	NaN	NaN	NaN	0.84651	1	4279	4279		1.6704	0	1	9628	+		7834	8809	4504	4598	6192	6192					0.08706140796812178
GGVGRSSL	8	Unmodified	_GGVGRSSL_					0	0	0			REV__ENSG00000188937|ENST00000378220|NYX	REV__ENSG00000188937|ENST00000378220|NYX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.3998780682001	1	732.399878	731.392602	2.0225	0.0014813	-6.1779	-0.0045247	-4.1554	-0.0030434	732.3952847354055	26.118	0.1448	26.107	26.059	26.204	-0.011137	576	70	1.2765218	0.041358113	1.2750024	260.465	0	8.438812						289	7	4	NaN	NaN	NaN	0.74229	1	3699	3699		16.417	4.8682	1	47039	+		7835	11074	4505	4599	6193	6193					0.016161004863306516
GGVGRSSL	8	Unmodified						0	0	0			REV__ENSG00000188937|ENST00000378220|NYX	REV__ENSG00000188937|ENST00000378220|NYX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	732.399878	731.392602	2.0225	0.0014813	-6.1779	-0.0045247	-4.1554	-0.0030434	732.3952847354055	26.118	0.1448	26.107	26.059	26.204	-0.011137	576	70	1.2765218	0.041358113	1.2750024	260.465		8.438812	-0.0056831	0.00021096	-0.00075972	NaN	16.417	289	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47039	+		7836	11074	4505	4599							0.016161004863306516
GGVGVGFA	8	Unmodified	_GGVGVGFA_					0	0	0		ENSG00000171044|ENST00000416569|XKR6	ENSG00000171044|ENST00000416569|XKR6	ENSG00000171044|ENST00000416569|XKR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3460515836999	1	663.346052	662.338775	1.6982	0.0011265	-8.0686	-0.0053523	-6.3704	-0.0042258	663.3402788966281	55.124	0.19265	55.124	55.052	55.244	0	711	112	1.1954219	0.066832066	1.1954219	244.38443	0	13.662735						260	9	2	NaN	NaN	NaN	0.84651	1	2369	2369		1.6704	0	1	28269			7837	4761	4506	4600	6194	6194					-0.005900719453961756
GGVIGCGK	8	Unmodified	_GGVIGCGK_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.602	0.001106	5.2435	0.0036199	6.8455	0.0047259	690.3638965130829	27.977	0.048262	27.968	27.943	27.992	-0.0089798	702	46	1.2008407	0.027094126	1.1993213	245.29745	0	5.534546						55	3	2	NaN	NaN	NaN	0.84887	1	2952	2952		0.32989	0	1	3852.7	+		7838	13595	4507	4601	6195	6195					-0.004057427887460108
GGYGGGNG	8	Unmodified	_GGYGGGNG_					0	0	0			REV__ENSG00000175592|ENST00000312562|FOSL1	REV__ENSG00000175592|ENST00000312562|FOSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.25287948	1	638.252879	637.245603	1.9488	0.0012438	-2.0363	-0.0012997	-0.087514	-5.5856E-05	638.2552939658881	53.314	0.072002	53.314	53.314	53.386	0	705	46	1.1990347	0.027094126	1.1990347	245.31813	0	5.543335						47	4	2	NaN	NaN	NaN	0.84945	1	1679	1679		0	0	1	3697.2	+		7839	10732	4508	4602	6196	6196					-0.08752996398618507
GGYGVAGA	8	Unmodified	_GGYGVAGA_					0	0	0			REV__ENST00000445155.5_3_10:106014771-106014894:+|nuORF	REV__ENST00000445155.5_3_10:106014771-106014894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.158471272	2	326.158471	650.30239	1.2007	0.00039162	6.021	0.0019638	7.2217	0.0023554	326.16075738880096	42.6	0.048027	42.61	42.61	42.658	0.0097351	1530	46	0.6949163	0.027906656	0.69339687	284.22574	0	11.414032						68	3	2	NaN	NaN	NaN	0.84651	1	1968	1968		1.6704	0	1	6110.7	+		7840	12206	4509	4603	6197	6197					-0.036749488420923626
GGYLAVEPATW	11	Unmodified	_GGYLAVEPATW_					0	0	0			REV__ENST00000418510.1_1_22:26044617-26045175:+|nuORF	REV__ENST00000418510.1_1_22:26044617-26045175:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2902137265	2	582.290214	1162.56587	1.8761	0.0010925	-5.2542	-0.0030595	-3.378	-0.001967	582.2873225166775	21.657	0.072325	21.657	21.633	21.705	0	1215	40	0.8891654	0.023912191	0.8891654	360.36658	0	9.691284						60	4	2	NaN	NaN	NaN	0.57804	1	15232	15232		15.463	2.893	1	10466	+		7841	12097	4510	4604	6198	6198					-0.00890578247913254
GGYPGGSS	8	Unmodified	_GGYPGGSS_					0	0	0			REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.2838452574	1	681.283845	680.276569	1.0038	0.0006839	5.9904	0.0040812	6.9942	0.0047651	681.2898562345842	30.366	0.2413	30.359	30.287	30.528	-0.0064106	1107	61	0.9552588	0.036663115	0.9537394	195.18277	0	7.491165						228	11	3	NaN	NaN	NaN	0.84207	1	2761	2761		3.5732	1.9029	1	27305	+		7842	12328	4511	4605	6199	6199					-0.07635843084381122
GGYPGGSS	8	Unmodified						0	0	0			REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	REV__ENST00000472163.1_1_3:75263799-75264780:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	681.283845	680.276569	1.0038	0.0006839	5.9904	0.0040812	6.9942	0.0047651	681.2898562345842	30.366	0.2413	30.359	30.287	30.528	-0.0064106	1107	61	0.9552588	0.036663115	0.9537394	195.18277		7.491165	-0.027837	-0.00076433	-0.00075972	NaN	3.5732	228	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27305	+		7843	12328	4511	4605							-0.07635843084381122
GGYSVHCN	8	Unmodified	_GGYSVHCN_					0	0	0		ENST00000443509.6_1_9:79323785-79323848:-|nuORF	ENST00000443509.6_1_9:79323785-79323848:-|nuORF	ENST00000443509.6_1_9:79323785-79323848:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.67141985924997	2	418.67142	835.328287	1.7099	0.00071591	-10.36	-0.0043375	-8.6501	-0.0036215	418.66767105209624	30.439	0.048275	30.439	30.415	30.463	0	1413	31	0.7673241	0.018526852	0.7673241	312.41013	0	7.5430603						32	3	2	NaN	NaN	NaN	0.8439	1	5200	5200		3.1533	0	1	2095.8			7844	7014	4512	4606	6200	6200					-0.0959642266212768
GGYSVHCN	8	Unmodified						0	0	0		ENST00000443509.6_1_9:79323785-79323848:-|nuORF	ENST00000443509.6_1_9:79323785-79323848:-|nuORF	ENST00000443509.6_1_9:79323785-79323848:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	418.67142	835.328287	1.2433	0.00052055	-9.9708	-0.0041745	-8.7275	-0.0036539	418.66687571838514	30.438	0.096542	30.432	30.408	30.505	-0.0057545	1413	43	0.7673241	0.025929153	0.76580465	312.41013		10.556854	-0.0033778	0.00014365	-0.00075972	NaN	3.1533	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4257.3			7845	7014	4512	4606							-0.0959642266212768
GGYYPYPPVP	10	Unmodified	_GGYYPYPPVP_					0	0	0		nc|ENSG00000147231|Q6NSI4-2|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-2|RADX	nc|ENSG00000147231|Q6NSI4-2|RADX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2687500029	2	555.26875	1108.52295	1.1155	0.00061942	0.021766	1.2086E-05	1.1373	0.00063151	555.2682212479156	24.623	0.2171	24.623	24.55	24.767	0	1236	115	0.876284	0.06993121	0.876284	355.34882	0	28.358368						261	9	2	NaN	NaN	NaN	0.6965	1	13221	13221		8.2903	0	1	36577			7846	3589	4513	4607	6201	6201					-0.026973483053552627
GHAATGNP	8	Unmodified	_GHAATGNP_					0	0	0			REV__ENSG00000144290|ENST00000446997|SLC4A10	REV__ENSG00000144290|ENST00000446997|SLC4A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3372778114	1	724.337278	723.330001	-0.48912	-0.00035429	3.1319	0.0022686	2.6428	0.0019143	724.339038454613	54.378	0.14391	54.377	54.353	54.497	-0.00061798	609	61	1.2567334	0.036007762	1.255214	256.47986	0	7.348633						151	7	2	NaN	NaN	NaN	0.84692	1	3578	3578		1.4396	0	1	22135	+		7847	9894	4514	4608	6202	6202					-0.04273045581862789
GHAEVFSDAEL	11	Unmodified	_GHAEVFSDAEL_					0	0	0			REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7723851141001	2	587.772385	1173.53022	1.3506	0.00079384	-1.6681	-0.00098049	-0.31756	-0.00018665	587.7717905084788	21.464	0.12042	21.45	21.378	21.499	-0.014006	1200	70	0.89836043	0.042283356	0.896841	364.05328	0	17.13498						173	6	2	NaN	NaN	NaN	0.59385	1	15038	15038		14.425	0.38343	1	18985	+		7848	13329	4515	4609	6203	6203					-0.049606604955670264
GHAEVFSDAEL	11	Unmodified						0	0	0			REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	587.772385	1173.53022	1.8044	0.0010606	-8.6845	-0.0051045	-6.88	-0.0040439	587.7658422656611	21.609	0.048206	21.609	21.585	21.633	0	1209	46	0.892844	0.02758503	0.892844	361.8178		11.178619	0.07927	-0.0052408	-0.0019985	NaN	14.425	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4611.3	+		7849	13329	4515	4609							-0.049606604955670264
GHAEVFSDAEL	11	Unmodified						0	0	0			REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.772385	1173.53022	1.3506	0.00079384	-1.6681	-0.00098049	-0.31756	-0.00018665	587.7717905084788	21.464	0.12042	21.45	21.378	21.499	-0.014006	1200	70	0.89836043	0.042283356	0.896841	364.05328		17.13498	-0.07927	0.0030072	0.0019985	NaN	14.425	173	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18985	+		7850	13329	4515	4609							-0.049606604955670264
GHAGGGLH	8	Unmodified	_GHAGGGLH_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3426975403	1	705.342698	704.335421	1.2512	0.00088255	2.0468	0.0014437	3.2981	0.0023263	705.3449967232528	55.388	0.19197	55.388	55.292	55.484	0	579	61	1.2747238	0.035961628	1.2747238	260.2818	0	7.3428955						131	9	2	NaN	NaN	NaN	0.84876	1	3293	3293		0.39566	0	1	8380.3			7851	2702	4516	4610	6204	6204					-0.02857321999385931
GHAIVPPS	8	Unmodified	_GHAIVPPS_					0	0	0			REV__CON__Q28065	REV__CON__Q28065	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.4253645372	1	777.425365	776.418088	1.6318	0.0012686	-1.2434	-0.00096667	0.38838	0.00030194	777.4247941218788	24.84	0.14479	24.84	24.743	24.888	0	486	67	1.3303722	0.039435506	1.3303722	271.16302	0	8.037933						169	7	2	NaN	NaN	NaN	0.80071	1	4447	4447		9.1232	0	1	19238	+	+	7852	8272	4517	4611	6205	6205					0.02093575008757398
GHAVPANG	8	Unmodified	_GHAVPANG_					0	0	0		nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000078900|O15350-9|TP73	nc|ENSG00000078900|O15350-9|TP73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3580132535001	1	722.358013	721.350737	1.7679	0.0012771	4.3702	0.0031568	6.1381	0.0044339	722.3609314099734	26.312	0.19307	26.312	26.239	26.432	0	645	70	1.2351195	0.04146874	1.2351195	252.08163	0	8.463547						277	9	2	NaN	NaN	NaN	0.84207	1	3616	3616		3.5732	0	1	30936			7853	888	4518	4612	6206	6206					-0.021084552021875425
GHDGGSASG	9	Unmodified	_GHDGGSASG_					0	0	0			REV__SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|57|1|anti-sense	REV__SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|57|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.2907215493001	1	744.290722	743.283445	1.9913	0.0014821	-6.5291	-0.0048595	-4.5378	-0.0033775	744.2865334627909	25.491	0.096504	25.491	25.443	25.539	0	606	37	1.2585332	0.021597743	1.2585332	256.719	0	4.4055634						64	5	2	NaN	NaN	NaN	0.67989	1	3962	3962		0.92586	0.59598	1	3354.4	+		7854	13356	4519	4613	6207	6207					-0.09846530203799375
GHEKHDELK	9	Unmodified	_GHEKHDELK_					0	0	0			REV__SIPA1L3|p.H596Tfs*12|1|0.51|ENSG00000105738|chr19:38100081-38100081|C/-|frameshift_variant	REV__SIPA1L3|p.H596Tfs*12|1|0.51|ENSG00000105738|chr19:38100081-38100081|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.77526215405	2	546.775262	1091.53597	1.144	0.00062552	5.505	0.00301	6.649	0.0036355	547.2802374663563	21.055	0.096281	21.041	21.041	21.138	-0.014086	1242	58	0.87260187	0.03499776	0.8710824	353.92322	0	14.194916						110	5	2	NaN	NaN	NaN	0.44082	1	12150	12150		12.049	0.50025	1	12668	+		7855	8973	4520	4614	6208	6208					-0.00613517193255575
GHFLVGDG	8	Unmodified	_GHFLVGDG_					0	0	0			REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.3889790309001	1	801.388979	800.381703	1.8164	0.0014556	-3.3775	-0.0027067	-1.5611	-0.0012511	801.3857843001816	27.277	0.096521	27.277	27.253	27.35	0	507	46	1.3178225	0.02690649	1.3178225	268.46536	0	5.4813538						58	5	2	NaN	NaN	NaN	0.84876	1	4751	4751		0.39566	0	1	3495.8	+		7856	10104	4521	4615	6209	6209					-0.026473018879414667
GHGAGGGR	8	Unmodified	_GHGAGGGR_					0	0	0			REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.6647864579	2	334.664786	667.31502	1.4079	0.00047117	4.194	0.0014036	5.6018	0.0018747	334.6661640833745	40.272	0.52931	40.272	39.839	40.368	0	1539	79	0.68933374	0.048374176	0.68933374	281.79486	0	19.775024						540	23	2	NaN	NaN	NaN	0.84876	1	2532	2532		0.39566	0	1	341140	+		7857	11651	4522	4616	6210	6210					-0.03194492659201842
GHGAGGGR	8	Unmodified						0	0	0			REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.664786	667.31502	1.4079	0.00047117	4.194	0.0014036	5.6018	0.0018747	334.6661640833745	40.272	0.52931	40.272	39.839	40.368	0	1539	79	0.68933374	0.048374176	0.68933374	281.79486		19.775024	0	0	0	NaN	0.39566	540	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341140	+		7858	11651	4522	4616							-0.03194492659201842
GHGAKPGK	8	Unmodified	_GHGAKPGK_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.21411216395006	2	376.214112	750.413671	1.807	0.00067982	1.1736	0.00044152	2.9806	0.0011213	376.2151846646881	22.429	0.072199	22.429	22.405	22.477	0	1449	31	0.74507743	0.018550932	0.74507743	303.9061	0	7.566681						47	4	2	NaN	NaN	NaN	0.84945	1	4069	4069		0	0	1	2937.2	+		7859	11593	4523	4617	6211	6211					0.028481105858645606
GHGAKPGK	8	Unmodified	_GHGAKPGK_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.4209478613002	1	751.420948	750.413671	1.925	0.0014465	1.8439	0.0013856	3.7689	0.002832	751.4232553367049	28.387	0.096542	28.378	28.354	28.45	-0.0089779	531	34	1.3034686	0.019744158	1.3019491	265.8392	0	4.026764						55	5	2	NaN	NaN	NaN	0.84945	1	3990	3990		0	0	1	3730.2	+		7860	11593	4523	4617	6212	6212					0.028481105858645606
GHGAKPGK	8	Unmodified	_GHGAKPGK_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.21411216395006	2	376.214112	750.413671	1.7991	0.00067684	4.6702	0.001757	6.4693	0.0024338	376.21650045163864	23.151	0.048288	23.138	23.138	23.186	-0.013294	1449	43	0.74507743	0.025974154	0.743558	303.9061	0	10.594482						69	3	2	NaN	NaN	NaN	0.84945	1	3991	3991		0	0	1	14983	+		7861	11593	4523	4617	6213	6213					0.028481105858645606
GHGAKPGK	8	Unmodified						0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	376.214112	750.413671	1.807	0.00067982	1.1736	0.00044152	2.9806	0.0011213	376.2151846646881	22.429	0.072199	22.429	22.405	22.477	0	1449	31	0.74507743	0.018550932	0.74507743	303.9061		7.566681	0	0	0	NaN	0	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2937.2	+		7862	11593	4523	4617							0.028481105858645606
GHGAMSSG	8	Unmodified	_GHGAMSSG_					0	0	0			REV__CDKN2A|p.E10Afs*28|1|0.56|ENSG00000147889|chr9:21974783-21974799|CCAGTCAGCCGAAGGCT/-|frameshift_variant	REV__CDKN2A|p.E10Afs*28|1|0.56|ENSG00000147889|chr9:21974783-21974799|CCAGTCAGCCGAAGGCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.1450379332501	2	352.145038	702.275523	1.4905	0.00052487	2.6651	0.0009385	4.1556	0.0014634	352.1459552020599	44.11	0.11979	44.122	44.074	44.193	0.011429	1512	25	0.7060759	0.014873028	0.70455647	288.35104	0	6.073944						51	6	2	NaN	NaN	NaN	0.84692	1	3194	3194		1.4396	0	1	2811	+		7863	8194	4524	4618	6214	6214					-0.0875238072491129
GHGASVAA	8	Unmodified	_GHGASVAA_					0	0	0			REV__nc|ENSG00000113648|O75367|MACROH2A1	REV__nc|ENSG00000113648|O75367|MACROH2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3314641520001	1	669.331464	668.324188	0.051363	3.4379E-05	6.2357	0.0041738	6.2871	0.0042082	669.3357394432073	46.172	0.35998	46.183	46.015	46.375	0.010719	495	85	1.3249949	0.05020678	1.3234755	270.82434	0	10.262085						490	16	2	NaN	NaN	NaN	0.84887	1	2463	2463		0.32989	0	1	83598	+		7864	9155	4525	4619	6215	6215					-0.023241440935180435
GHGGAGGY	8	Unmodified	_GHGGAGGY_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.2845139594	1	675.284514	674.277237	-0.7584	-0.00051214	-0.825	-0.00055711	-1.5834	-0.0010692	675.28471972596	53.312	0.19188	53.312	53.264	53.456	-0.00053406	804	67	1.1393254	0.039867997	1.1378059	232.83295	0	8.147461						285	9	4	NaN	NaN	NaN	0.84945	1	2617	2617		0	0	1	34783	+	+	7865	8288	4526	4620	6216	6216					-0.07293003644667806
GHGGGSGR	8	Unmodified	_GHGGGSGR_					0	0	0			REV__ENST00000457924.2_1_17:20279191-20279290:-|nuORF	REV__ENST00000457924.2_1_17:20279191-20279290:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.66224376895	2	342.662244	683.309935	1.6752	0.00057403	-0.86288	-0.00029567	0.81233	0.00027836	342.66321033667674	29.039	0.26548	29.039	28.967	29.232	0	1521	88	0.70049703	0.053900123	0.70049703	286.2241	0	22.023682						513	12	6	NaN	NaN	NaN	0.84876	1	2903	2903		0.39566	0	1	64216	+		7866	12255	4527	4621	6217	6217					-0.04438796521810673
GHGGGSGR	8	Unmodified						0	0	0			REV__ENST00000457924.2_1_17:20279191-20279290:-|nuORF	REV__ENST00000457924.2_1_17:20279191-20279290:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	342.662244	683.309935	1.6752	0.00057403	-0.86288	-0.00029567	0.81233	0.00027836	342.66321033667674	29.039	0.26548	29.039	28.967	29.232	0	1521	88	0.70049703	0.053900123	0.70049703	286.2241		22.023682	-0.0077898	-0.00067679	0.00075972	NaN	0.39566	513	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64216	+		7867	12255	4527	4621							-0.04438796521810673
GHGGKAAS	8	Unmodified	_GHGGKAAS_					0	0	0			REV__ENSG00000156885|ENST00000287490|COX6A2	REV__ENSG00000156885|ENST00000287490|COX6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3423631893	1	684.342363	683.335087	0.87756	0.00060055	4.3815	0.0029984	5.259	0.003599	684.3450883882635	42.217	0.14388	42.226	42.154	42.298	0.0089951	732	43	1.1827712	0.025310874	1.1812518	241.64781	0	5.171173						135	7	2	NaN	NaN	NaN	0.84727	1	2825	2825		1.2418	0.84618	1	14502	+		7868	10135	4528	4622	6218	6218					-0.019247417192445937
GHGGKAAS	8	Unmodified						0	0	0			REV__ENSG00000156885|ENST00000287490|COX6A2	REV__ENSG00000156885|ENST00000287490|COX6A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	684.342363	683.335087	0.87756	0.00060055	4.3815	0.0029984	5.259	0.003599	684.3450883882635	42.217	0.14388	42.226	42.154	42.298	0.0089951	732	43	1.1827712	0.025310874	1.1812518	241.64781		5.171173	0.0036013	0.00080683	-0.00075972	NaN	1.2418	135	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14502	+		7869	10135	4528	4622							-0.019247417192445937
GHGGRGGA	8	Unmodified	_GHGGRGGA_					0	0	0		ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	1.2132	0.0008108	3.112	0.0020798	4.3251	0.0028906	668.3245802786938	32.104	0.07238	32.104	32.104	32.177	0	738	46	1.179155	0.027123094	1.179155	241.0225	0	5.544037						68	4	2	NaN	NaN	NaN	0.84887	1	2524	2524		0.32989	0	1	4958.8			7870	7407	4529	4623	6219	6219					-0.03194492659190473
GHGGRGGA	8	Unmodified	_GHGGRGGA_					0	0	0		ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.36086	0.00012077	2.5962	0.00086885	2.9571	0.00098962	334.66593496136653	46.388	0.14397	46.398	46.374	46.518	0.0098152	1530	37	0.6949163	0.022326529	0.69339687	284.077	0	9.126953						98	7	2	NaN	NaN	NaN	0.84887	1	2427	2427		0.32989	0	1	7480.9			7871	7407	4529	4623	6220	6220					-0.03194492659190473
GHGKGPGG	8	Unmodified	_GHGKGPGG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3317985030002	1	666.331799	665.324522	1.712	0.0011407	-0.49818	-0.00033195	1.2138	0.00080879	666.3324561890939	54.62	0.16837	54.62	54.548	54.716	0	759	55	1.1664921	0.032570362	1.1664921	238.44853	0	6.6578827						134	8	2	NaN	NaN	NaN	0.84945	1	2465	2465		0	0	1	10574	+		7872	10911	4530	4624	6221	6221					-0.021527243736613855
GHGKGPGG	8	Unmodified	_GHGKGPGG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3317985030002	1	666.331799	665.324522	-0.036279	-2.4174E-05	2.1778	0.0014512	2.1416	0.001427	666.3332074491891	52.665	0.1437	52.665	52.617	52.761	-0.00045395	759	49	1.1664921	0.028954625	1.1649727	238.44852	0	5.918747						111	7	2	NaN	NaN	NaN	0.84945	1	2378	2378		0	0	1	9485.1	+		7873	10911	4530	4624	6222	6222					-0.021527243736613855
GHGKGPGG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.331799	665.324522	1.712	0.0011407	-0.49818	-0.00033195	1.2138	0.00080879	666.3324561890939	54.62	0.16837	54.62	54.548	54.716	0	759	55	1.1664921	0.032570362	1.1664921	238.44853		6.6578827	-0.05872	-0.00067581	-0.014608	NaN	0	134	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10574	+		7874	10911	4530	4624							-0.021527243736613855
GHGKGPGG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	666.331799	665.324522	1.3968	0.00093076	1.9965	0.0013303	3.3933	0.0022611	666.3335274848519	54.738	0.024002	54.737	54.737	54.761	-0.00061798	708	25	1.1972283	0.014449477	1.1957089	244.73146		2.9536743	0.05872	0.00098648	0.014608	NaN	0	26	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625.7	+		7875	10911	4530	4624							-0.021527243736613855
GHGPGCCG	8	Unmodified	_GHGPGCCG_					0	0	0		ENST00000586796.1_1_17:40739748-40761384:-|nuORF	ENST00000586796.1_1_17:40739748-40761384:-|nuORF	ENST00000586796.1_1_17:40739748-40761384:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.2337407173001	1	687.233741	686.226464	3.065	0.0021063	-0.91713	-0.00063028	2.1478	0.0014761	687.2340761454074	28.652	0.048273	28.644	28.644	28.692	-0.0083485	1104	22	0.9570911	0.012824476	0.95557165	195.52373	0	2.6199036						25	3	2	NaN	NaN	NaN	0.84945	1	2876	2876		0	0	1	1296.5			7876	7705	4531	4625	6223	6223					-0.12919992285526405
GHGPGGGK	8	Unmodified	_GHGPGGGK_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;ENST00000557357.5_1_14:90722941-90730025:+|nuORF;ENST00000554624.5_1_14:90722881-90729792:+|nuORF;ENST00000555679.5_1_14:90722941-90730197:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3317985030001	1	666.331799	665.324522	0.15273	0.00010177	1.6702	0.0011129	1.8229	0.0012147	666.3327631555545	54.666	0.047993	54.666	54.642	54.69	-0.00061798	759	43	1.1664921	0.025335193	1.1649727	238.44852	0	5.1789093						60	3	2	NaN	NaN	NaN	0.84876	1	2377	2377		0.39566	0.39566	1	5927.5			7877	1273	4532	4626	6224	6224					-0.02152724373672754
GHGTLPGA	8	Unmodified	_GHGTLPGA_					0	0	0		ENST00000378787.7_2_13:46946699-46961463:-|nuORF	ENST00000378787.7_2_13:46946699-46961463:-|nuORF	ENST00000378787.7_2_13:46946699-46961463:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804	1	709.362764	708.355488	1.4455	0.0010254	-7.0209	-0.0049804	-5.5754	-0.003955	709.3578256413037	23.489	0.12068	23.489	23.417	23.538	0	717	46	1.1918083	0.027102828	1.1918083	243.32527	0	5.533432						107	6	2	NaN	NaN	NaN	0.84692	1	3387	3387		1.4396	1.0439	1	8682.4			7878	6715	4533	4627	6225	6225					-0.010355710594353695
GHGVGSFL	8	Unmodified	_GHGVGSFL_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3940644088001	1	773.394064	772.386788	1.3403	0.0010366	-7.2721	-0.0056242	-5.9318	-0.0045876	773.3892222041457	32.297	0.16894	32.297	32.249	32.418	0	537	61	1.2998781	0.035915613	1.2998781	264.97162	0	7.321167						136	8	2	NaN	NaN	NaN	0.81807	1	4389	4389		6.794	0	1	11812			7879	1665	4534	4628	6226	6226					-0.008509980253393223
GHGVGSFL	8	Unmodified	_GHGVGSFL_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3940644088001	1	773.394064	772.386788	1.3907	0.0010756	-3.2651	-0.0025252	-1.8744	-0.0014496	773.3903477371426	32.466	0.16889	32.466	32.394	32.563	0	528	46	1.3052634	0.026923656	1.3052634	266.06937	0	5.48822						118	8	2	NaN	NaN	NaN	0.84207	1	4391	4391		3.5732	0	1	10338			7880	1665	4534	4628	6227	6227					-0.008509980253393223
GHGWFSMFI	9	Unmodified	_GHGWFSMFI_					0	0	0			REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2498373557501	2	541.249837	1080.48512	1.3801	0.00074696	7.6242	0.0041266	9.0043	0.0048736	541.254210424517	32.442	0.16889	32.442	32.394	32.563	0	1266	88	0.85786515	0.05344647	0.85786515	347.99045	0	21.68042						357	8	4	NaN	NaN	NaN	0.14945	1	11991	11991		28.667	2.9147	1	46723	+		7881	12964	4535	4629	6228	6228					-0.05190137771796799
GHGWFSMFI	9	Unmodified						0	0	0			REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.249837	1080.48512	1.3801	0.00074696	7.6242	0.0041266	9.0043	0.0048736	541.254210424517	32.442	0.16889	32.442	32.394	32.563	0	1266	88	0.85786515	0.05344647	0.85786515	347.99045		21.68042	0.0020997	-0.0002661	-0.00016167	NaN	28.667	357	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46723	+		7882	12964	4535	4629							-0.05190137771796799
GHGWFSMFI	9	Unmodified						0	0	0			REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.249837	1080.48512	0.91124	0.00049321	8.0454	0.0043546	8.9566	0.0048478	541.254395498431	32.441	0.19304	32.438	32.39	32.583	-0.0031052	1263	91	0.85970795	0.055292487	0.8581885	348.73798		22.42923	-0.0020997	0.00018978	0.00016167	NaN	28.667	377	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49481	+		7883	12964	4535	4629							-0.05190137771796799
GHKGAGFTF	9	Unmodified	_GHKGAGFTF_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.23250188235	2	461.232502	920.450451	0.39184	0.00018073	5.2053	0.0024008	5.5971	0.0025816	461.2342302779845	37.506	0.072392	37.506	37.482	37.554	0	1392	43	0.780288	0.02592355	0.780288	317.21335	0	10.538788						78	4	3	NaN	NaN	NaN	0.64666	1	6416	6416		3.5698	0	1	4851.6	+		7884	9736	4536	4630	6229	6229					-0.012956375882481552
GHLVGPKG	8	Unmodified	_GHLVGPKG_					0	0	0			REV__nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	REV__nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.4413489524001	1	764.441349	763.434072	1.2768	0.00097603	-5.2094	-0.0039823	-3.9326	-0.0030062	764.4383089576554	32.755	0.096535	32.752	32.703	32.8	-0.0031013	504	49	1.3196158	0.028692722	1.3180964	269.05008	0	5.850006						107	5	2	NaN	NaN	NaN	0.8439	1	4192	4192		3.1533	0.36816	1	11630	+		7885	13195	4537	4631	6230	6230					0.042892812456557294
GHMMGMTVHDM	11	Unmodified	_GHMMGMTVHDM_					0	0	0		tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.1660397017334	3	416.16604	1245.47629	1.9139	0.00079651	-8.5716	-0.0035672	-6.6577	-0.0027707	416.1623964615734	23.778	0.09639	23.765	23.741	23.837	-0.013048	1497	28	0.71537006	0.01672399	0.7138506	434.55112	0	10.158997						69	5	3	NaN	NaN	NaN	0.7782	1	16898	16898		0.55697	0.43905	1	4243.1			7886	13727	4538	4632	6231	6231					-0.13662938786433187
GHPSPSSL	8	Unmodified	_GHPSPSSL_					0	0	0			REV__ENST00000481456.1_1_6:31500550-31500844:-|nuORF	REV__ENST00000481456.1_1_6:31500550-31500844:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.19558505980007	2	391.195585	780.376617	1.5098	0.00059062	-3.2545	-0.0012731	-1.7447	-0.00068252	391.1944853245523	28.194	0.14479	28.194	28.098	28.243	0	1407	46	0.77102906	0.027788818	0.77102906	314.2752	0	11.326843						103	7	2	NaN	NaN	NaN	0.84455	1	4493	4493		2.7852	0	1	10873	+		7887	12268	4539	4633	6232	6232					-0.022356057505589888
GHQGLVPSPSS	11	Unmodified	_GHQGLVPSPSS_					0	0	0			REV__nc|ENSG00000205726|Q15811-13|ITSN1	REV__nc|ENSG00000205726|Q15811-13|ITSN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2698126354001	2	533.269813	1064.52507	0.61496	0.00032794	5.1942	0.0027699	5.8092	0.0030979	533.273282500067	20.911	0.072268	20.897	20.873	20.945	-0.014086	1251	37	0.8670771	0.022102654	0.8655577	351.7936	0	8.96756						65	4	2	NaN	NaN	NaN	0.74794	1	11069	11069		4.3102	0.34164	1	9583.8	+		7888	13221	4540	4634	6233	6233					-0.004609195675357114
GHQGLVPSPSS	11	Unmodified						0	0	0			REV__nc|ENSG00000205726|Q15811-13|ITSN1	REV__nc|ENSG00000205726|Q15811-13|ITSN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	533.269813	1064.52507	1.5851	0.00084528	3.1187	0.0016631	4.7038	0.0025084	533.2706094017066	20.887	0.096344	20.887	20.862	20.959	0	1254	37	0.8652351	0.022107422	0.8652351	351.0463		8.969482	-0.0050986	-0.0011101	-0.00016127	NaN	4.3102	54	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8537.1	+		7889	13221	4540	4634							-0.004609195675357114
GHQGLVPSPSS	11	Unmodified						0	0	0			REV__nc|ENSG00000205726|Q15811-13|ITSN1	REV__nc|ENSG00000205726|Q15811-13|ITSN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	533.269813	1064.52507	0.61496	0.00032794	5.1942	0.0027699	5.8092	0.0030979	533.273282500067	20.911	0.072268	20.897	20.873	20.945	-0.014086	1251	37	0.8670771	0.022102654	0.8655577	351.7936		8.96756	0.0050986	0.0011035	0.00016127	NaN	4.3102	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9583.8	+		7890	13221	4540	4634							-0.004609195675357114
GHSPGGQK	8	Unmodified	_GHSPGGQK_					0	0	0		ENST00000573895.1_1_17:959077-961279:-|nuORF	ENST00000573895.1_1_17:959077-961279:-|nuORF	ENST00000573895.1_1_17:959077-961279:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3794769771	1	767.379477	766.372201	0.32713	0.00025103	4.4957	0.0034499	4.8228	0.0037009	767.3847304115848	46.436	0.11993	46.446	46.374	46.494	0.009819	546	43	1.294491	0.025146246	1.2929716	263.90958	0	5.1266174						94	6	3	NaN	NaN	NaN	0.84455	1	4229	4229		2.7852	0	1	6381.6			7891	7653	4541	4635	6234	6234					-0.020330701734792456
GHVAGPAI	8	Unmodified	_GHVAGPAI_					0	0	0			REV__ENST00000359373.9_1_11:72438093-72443603:-|nuORF	REV__ENST00000359373.9_1_11:72438093-72443603:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3991497866999	1	721.39915	720.391873	1.0176	0.00073407	-5.8454	-0.0042169	-4.8279	-0.0034828	721.3949272925503	27.132	0.12066	27.122	27.074	27.194	-0.010126	570	67	1.2801172	0.03954935	1.2785977	261.27197	0	8.0720215						199	6	3	NaN	NaN	NaN	0.84876	1	3525	3525		0.39566	0	1	17101	+		7892	11834	4542	4636	6235	6235					0.020493058372608175
GHYLLGKG	8	Unmodified	_GHYLLGKG_					0	0	0			REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4675637029002	1	844.467564	843.460287	1.4471	0.001222	-0.13335	-0.00011261	1.3138	0.0011094	844.4675805030267	20.862	0.14455	20.862	20.838	20.983	0	1308	85	0.83204526	0.051651	0.83204526	169.35727	0	10.513214						272	7	3	NaN	NaN	NaN	0.84876	1	5312	5312		0.39566	0	1	37050	+		7893	12911	4543	4637	6236	6236					0.03229550417142946
GHYLLGKG	8	Unmodified						0	0	0			REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	844.467564	843.460287	1.4471	0.001222	-0.13335	-0.00011261	1.3138	0.0011094	844.4675805030267	20.862	0.14455	20.862	20.838	20.983	0	1308	85	0.83204526	0.051651	0.83204526	169.35727		10.513214	-0.017162	-0.00064729	0.00075972	NaN	0.39566	272	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37050	+		7894	12911	4543	4637							0.03229550417142946
GHYLLGKG	8	Unmodified						0	0	0			REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	844.467564	843.460287	0.63714	0.00053804	1.1437	0.00096578	1.7808	0.0015038	844.4686201539481	20.911	0.16854	20.897	20.873	21.041	-0.014086	1308	82	0.83204526	0.04980898	0.8305259	169.35727		10.138275	0.017162	0.00043109	-0.00075972	NaN	0.39566	314	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40287	+		7895	12911	4543	4637							0.03229550417142946
GIAMVEGV	8	Unmodified	_GIAMVEGV_					0	0	0			REV__nc|ENSG00000021826|P31327-2|CPS1	REV__nc|ENSG00000021826|P31327-2|CPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4018519031001	1	775.401852	774.394575	1.9155	0.0014853	-5.1053	-0.0039587	-3.1898	-0.0024734	775.3976414934813	24.333	0.048281	24.333	24.309	24.357	0	555	37	1.2891023	0.021558523	1.2891023	262.76312	0	4.394348						28	3	2	NaN	NaN	NaN	0.84207	1	4422	4422		3.5732	0.78803	1	1495.1	+		7896	8430	4544	4638	6237	6237					-0.0016460682006709249
GICIALNS	8	Unmodified	_GICIALNS_					0	0	0			REV__nc|ENSG00000164691|Q8N103-4|TAGAP	REV__nc|ENSG00000164691|Q8N103-4|TAGAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.4127509404	1	790.412751	789.405474	2.2942	0.0018134	-9.8261	-0.0077667	-7.5319	-0.0059533	790.4050078541347	55.028	0.096169	55.028	55.028	55.124	0	369	562	1.4001206	0.33337677	1.4001206	285.29797	0	67.931076						598	5	2	NaN	NaN	NaN	0.84512	1	4619	4619		2.4615	0	1	252160	+		7897	10347	4545	4639	6238	6238					0.0023479555419498865
GIGCGTGC	8	Unmodified	_GIGCGTGC_					0	0	0			REV__ENSG00000204887|ENST00000377747|KRTAP1-4	REV__ENSG00000204887|ENST00000377747|KRTAP1-4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.2538074574001	1	667.253807	666.246531	-0.074748	-4.9876E-05	8.828	0.0058905	8.7533	0.0058406	667.259210687568	55.074	0.096012	55.073	55.025	55.121	-0.00061798	702	55	1.2008407	0.03251815	1.1993213	245.46301	0	6.647003						102	5	2	NaN	NaN	NaN	0.84692	1	2386	2386		1.4396	0	1	8426.9	+		7898	11058	4546	4640	6239	6239					-0.09994241345577848
GIGMAHTE	8	Unmodified	_GIGMAHTE_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.3716144072	1	815.371614	814.364338	1.8577	0.0015147	4.7206	0.003849	6.5782	0.0053637	815.3755301661458	24.357	0.072386	24.357	24.333	24.406	0	468	37	1.3411216	0.021496534	1.3411216	273.13266	0	4.3779907						52	4	2	NaN	NaN	NaN	0.80071	1	4943	4943		9.1232	2.26	1	2756.4			7899	1924	4547	4641	6240	6240					-0.05026965485274104
GIGPTHDD	8	Unmodified	_GIGPTHDD_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.3580728329999	1	811.358073	810.350796	1.6634	0.0013496	6.1756	0.0050106	7.839	0.0063602	811.3641002483064	40.438	0.48044	40.445	40.349	40.829	0.0067558	489	106	1.3285799	0.06276846	1.3270605	270.60065	0	12.784454						990	21	5	NaN	NaN	NaN	0.84455	1	4798	4798		2.7852	0	1	264270			7900	4067	4548	4642	6241	6241					-0.06196499992859117
GIGVTPFA	8	Unmodified	_GIGVTPFA_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;NOX3|p.A407E|1|0.11|ENSG00000074771|chr6:155422782-155422782|G/T|missense_variant;nc|ENSG00000086991|Q9NPH5-4|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000074771|ENST00000159060|NOX3;ENSG00000086991|ENST00000263317|NOX4;nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000140279|Q9NRD8|DUOX2;nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000165168|ENST00000378588|CYBB	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.4192165268	1	761.419217	760.41194	1.7917	0.0013642	0.29022	0.00022098	2.0819	0.0015852	761.4188623469955	28.194	0.096525	28.194	28.17	28.267	0	537	49	1.2998781	0.028729439	1.2998781	265.0444	0	5.8578796						98	5	2	NaN	NaN	NaN	0.75682	1	4222	4222		15.013	0	1	10193			7901	3257;4380;367	4549	4643	6242	6242					0.02215056777231439
GIGVWALGP	9	Unmodified	_GIGVWALGP_					0	0	0			REV__ENST00000489288.6_1_12:2986406-2994511:+|nuORF	REV__ENST00000489288.6_1_12:2986406-2994511:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.24762063029993	2	435.247621	868.480688	0.79872	0.00034764	6.5807	0.0028642	7.3794	0.0032119	435.25032712486916	27.566	0.21722	27.557	27.364	27.581	-0.009552	1362	79	0.79879075	0.048065543	0.7972713	325.0209	0	19.557465						286	10	2	NaN	NaN	NaN	0.65388	1	5504	5504		3.1533	0.69183	1	43708	+		7902	12451	4550	4644	6243	6243					0.041187210769294325
GIKDFDFW	8	Unmodified	_GIKDFDFW_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.24781759555	2	514.247818	1026.48108	1.546	0.00079502	-0.85043	-0.00043733	0.69557	0.00035769	514.2471450395166	15.172	0.048025	15.16	15.136	15.184	-0.012202	1308	31	0.83204526	0.018456757	0.8305259	337.74017	0	7.4918823						46	3	2	NaN	NaN	NaN	0.78264	1	9430	9430		11.548	4.0081	1	4936.1			7903	5722	4551	4645	6244	6244					-0.031099039938681017
GIKEGGKG	8	Unmodified	_GIKEGGKG_					0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|45|3|sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|45|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.4202791593001	1	745.420279	744.413003	1.7187	0.0012812	4.3557	0.0032468	6.0744	0.004528	745.4234230471843	31.065	0.26547	31.06	31.012	31.277	-0.0050716	576	160	1.2765218	0.095425844	1.2750024	260.38113	0	19.464676						679	12	4	NaN	NaN	NaN	0.77489	1	3899	3899		12.588	0.32818	1	232740	+		7904	13357	4552	4646	6245	6245					0.03057271146144558
GILAAHVP	8	Unmodified	_GILAAHVP_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.4617500435	1	777.46175	776.454474	1.5345	0.001193	-7.2541	-0.0056397	-5.7196	-0.0044468	777.456363448338	35.842	0.31335	35.843	35.77	36.084	0.00053024	591	118	1.26753	0.07021904	1.2660105	258.354	0	14.312363						633	14	4	NaN	NaN	NaN	0.84651	1	4374	4374		1.6704	0	1	188230			7905	1158	4553	4647	6246	6246					0.05730451905469636
GILPALEIVM	10	Unmodified	_GILPALEIVM_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.6169300565	1	1055.61693	1054.60965	1.6502	0.001742	-1.315	-0.0013882	0.33517	0.00035381	1055.6159982234606	37.072	0.072277	37.072	37.048	37.121	0	93	61	1.5635144	0.035347342	1.5635144	317.21933	0	7.17157						95	4	2	NaN	NaN	NaN	0.21269	1	10857	10857		34.439	24.693	1	8399.2			7906	6186	4554	4648	6247	6247					0.08453314924872757
GIVEWNGK	8	Unmodified	_GIVEWNGK_					0	0	0			REV__DPP4|p.T401N|1|0.23|ENSG00000197635|chr2:162020271-162020271|G/T|missense_variant	REV__DPP4|p.T401N|1|0.23|ENSG00000197635|chr2:162020271-162020271|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.74015973895	2	451.74016	901.465767	1.445	0.00065277	-11.279	-0.0050952	-9.834	-0.0044424	451.73541268460764	41.809	0.072227	41.818	41.746	41.818	0.0089989	1383	43	0.7858409	0.025915146	0.7843215	319.5698	0	10.538635						52	4	2	NaN	NaN	NaN	0.8439	1	5982	5982		3.1533	0.36816	1	2651.8	+		7907	8328	4555	4649	6248	6248					0.01109229208952911
GIWSIPSVGDG	11	Unmodified	_GIWSIPSVGDG_					0	0	0			REV__TGM2|p.M252I|1|0.55|ENSG00000198959|chr20:38146820-38146820|C/A|missense_variant	REV__TGM2|p.M252I|1|0.55|ENSG00000198959|chr20:38146820-38146820|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2745636623	2	544.274564	1086.53457	1.4311	0.00077893	7.6681	0.0041736	9.0992	0.0049525	544.2788135216236	24.26	0.096563	24.248	24.248	24.344	-0.012749	1230	121	0.8799654	0.07357204	0.878446	356.93033	0	29.842194						192	5	4	NaN	NaN	NaN	0.25335	1	11933	11933		27.296	1.4953	1	52822	+		7908	13373	4556	4650	6249	6249					-0.005231512820046191
GIWSIPSVGDG	11	Unmodified						0	0	0			REV__TGM2|p.M252I|1|0.55|ENSG00000198959|chr20:38146820-38146820|C/A|missense_variant	REV__TGM2|p.M252I|1|0.55|ENSG00000198959|chr20:38146820-38146820|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.274564	1086.53457	1.4311	0.00077893	7.6681	0.0041736	9.0992	0.0049525	544.2788135216236	24.26	0.096563	24.248	24.248	24.344	-0.012749	1230	121	0.8799654	0.07357204	0.878446	356.93033		29.842194	-0.0065195	0.000274	-0.00075972	NaN	27.296	192	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52822	+		7909	13373	4556	4650							-0.005231512820046191
GIWYASPLLGS	11	Unmodified	_GIWYASPLLGS_					0	0	0			REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF	REV__ENST00000586995.5_3_17:67249715-67270153:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.30840647965	2	582.308406	1162.60226	2.3303	0.0013569	-6.4341	-0.0037466	-4.1038	-0.0023897	582.3045456694093	18.338	0.14411	18.324	18.276	18.42	-0.01395	1227	76	0.88180584	0.045994937	0.8802864	357.3837	0	18.641113						298	7	4	NaN	NaN	NaN	0.688	1	14715	14715		8.2448	2.5507	1	83858	+		7910	10087	4557	4651	6250	6250					0.027462986487989838
GIYGLDFYV	9	Unmodified	_GIYGLDFYV_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5193245018997	1	1046.51932	1045.51205	1.9341	0.0020241	-1.39	-0.0014546	0.54412	0.00056944	1046.5174540701464	25.033	0.072386	25.021	24.996	25.069	-0.012011	222	49	1.4873441	0.028403997	1.4858247	301.79916	0	5.7635193						76	4	2	NaN	NaN	NaN	0.66196	1	10230	10230		2.4615	0	1	5952.3			7911	3384	4558	4652	6251	6251					-0.008887506796327216
GKACSLTS	8	Unmodified	_GKACSLTS_					0	0	0			REV__ENST00000493446.1_1_7:1510215-1510538:-|nuORF	REV__ENST00000493446.1_1_7:1510215-1510538:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.3763654341	1	766.376365	765.369089	1.4219	0.0010897	4.3068	0.0033006	5.7287	0.0043903	766.3790139962548	32.513	0.072426	32.51	32.486	32.558	-0.0031052	507	67	1.3178225	0.039473414	1.316303	268.6724	0	8.047668						77	4	2	NaN	NaN	NaN	0.84455	1	4216	4216		2.7852	0	1	5975.9	+		7912	12480	4559	4653	6252	6252					-0.02298081342507885
GKAGHKGP	8	Unmodified	_GKAGHKGP_					0	0	0			REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.4209478613001	1	751.420948	750.413671	1.809	0.0013593	2.6088	0.0019603	4.4178	0.0033196	751.421960918629	28.388	0.048248	28.388	28.363	28.412	0	531	43	1.3034686	0.02512741	1.3034686	265.8392	0	5.124695						51	3	2	NaN	NaN	NaN	0.84887	1	4070	4070		0.32989	0.32989	1	3287.9	+		7913	11149	4560	4654	6253	6253					0.02848110585853192
GKAGHKGP	8	Unmodified						0	0	0			REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.420948	750.413671	1.809	0.0013593	2.6088	0.0019603	4.4178	0.0033196	751.421960918629	28.388	0.048248	28.388	28.363	28.412	0	531	43	1.3034686	0.02512741	1.3034686	265.8392		5.124695	0.0048421	0.00029543	0.00075972	NaN	0.32989	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3287.9	+		7914	11149	4560	4654							0.02848110585853192
GKAGHKGP	8	Unmodified						0	0	0			REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.420948	750.413671	1.925	0.0014465	1.8439	0.0013856	3.7689	0.002832	751.4232553367049	28.387	0.096542	28.378	28.354	28.45	-0.0089779	531	34	1.3034686	0.019744158	1.3019491	265.8392		4.026764	-0.0048421	-0.00027936	-0.00075972	NaN	0.32989	55	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3730.2	+		7915	11149	4560	4654							0.02848110585853192
GKAGIKTK	8	Unmodified	_GKAGIKTK_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2;NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant;NUFIP2|p.F315Vfs*2|1|0.37|ENSG00000108256|chr17:29287052-29287053|-/T|frameshift_variant	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.5145138955002	1	802.514514	801.507237	1.9804	0.0015893	4.6889	0.0037629	6.6693	0.0053522	802.519625414452	55.749	0.072144	55.749	55.749	55.821	0	357	73	1.407258	0.04283309	1.407258	286.67825	0	8.725708						153	4	3	NaN	NaN	NaN	0.84897	1	4769	4769		0.27539	0	1	11949			7916	1670	4561	4655	6254	6254					0.09854409968284017
GKAHFTWG	8	Unmodified	_GKAHFTWG_					0	0	0			REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.4471626118002	1	903.447163	902.439886	1.9519	0.0017634	2.9693	0.0026826	4.9212	0.004446	903.4500218054462	53.731	0.12959	53.731	53.626	53.755	0	324	61	1.42687	0.03563726	1.42687	290.1253	0	7.246155						202	5	3	NaN	NaN	NaN	0.84692	1	6124	6124		1.4396	0	1	41189	+		7917	8694	4562	4656	6255	6255					-0.01523620242664947
GKANAALA	8	Unmodified	_GKANAALA_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.4097144729999	1	715.409714	714.402438	-0.52446	-0.0003752	0.028929	2.0696E-05	-0.49553	-0.00035451	715.4111649793763	53.528	0.11979	53.528	53.48	53.599	-0.00053787	621	58	1.2495319	0.034216523	1.2480124	255.06938	0	6.984665						154	6	4	NaN	NaN	NaN	0.84727	1	3438	3438		1.2418	0	1	11231	+		7918	8378	4563	4657	6256	6256					0.03381288491698342
GKANAALA	8	Unmodified						0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.409714	714.402438	-0.52446	-0.0003752	0.028929	2.0696E-05	-0.49553	-0.00035451	715.4111649793763	53.528	0.11979	53.528	53.48	53.599	-0.00053787	621	58	1.2495319	0.034216523	1.2480124	255.06938		6.984665	0.010872	0.0017068	0.0010412	NaN	1.2418	154	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11231	+		7919	8378	4563	4657							0.03381288491698342
GKARAGVI	8	Unmodified	_GKARAGVI_					0	0	0		tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	tr|U7T267|U7T267_FUSNUQueuinetRNA-ribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tgtPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4835481181002	1	771.483548	770.476272	-0.22512	-0.00017368	5.6386	0.0043501	5.4135	0.0041764	771.4874941237837	59.13	0.19212	59.13	59.01	59.202	-0.00045776	480	67	1.3339561	0.03942716	1.3324367	271.92987	0	8.037323						242	9	3	NaN	NaN	NaN	0.84876	1	4295	4295		0.39566	0	1	26580			7920	13954	4564	4658	6257	6257					0.08185256654053319
GKASSGTS	8	Unmodified	_GKASSGTS_					0	0	0			REV__nc|ENSG00000008083|Q92833-2|JARID2	REV__nc|ENSG00000008083|Q92833-2|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3366091094001	1	694.336609	693.329333	1.0472	0.00072713	4.3724	0.0030359	5.4196	0.003763	694.339758140788	34.66	0.28928	34.66	34.539	34.828	-0.00064468	627	91	1.24593	0.0540694	1.2444105	254.47948	0	11.043625						454	13	3	NaN	NaN	NaN	0.84887	1	3044	3044		0.32989	0	1	62788	+		7921	8381	4565	4659	6258	6258					-0.029598850215620587
GKCSDSSL	8	Unmodified	_GKCSDSSL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.3505446140999	1	796.350545	795.343268	2.2865	0.0018209	6.5674	0.00523	8.854	0.0070509	796.3557179040941	26.046	0.16895	26.035	25.962	26.131	-0.011135	537	76	1.2998781	0.04487288	1.2983587	264.838	0	9.142456						193	8	2	NaN	NaN	NaN	0.80692	1	4601	4601		8.2903	0.74991	1	27370			7922	4008	4566	4660	6259	6259					-0.06258975584796644
GKCSDSSL	8	Unmodified						0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	796.350545	795.343268	2.3692	0.0018867	5.7039	0.0045423	8.0731	0.006429	796.3559909620477	26.022	0.21723	26.022	25.95	26.167	0	534	85	1.3016734	0.05025506	1.3016734	265.2038		10.238983	-0.0063978	-0.00046851	0.0016574	NaN	8.2903	283	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36501			7923	4008	4566	4660							-0.06258975584796644
GKFFLFLFAW	10	Unmodified	_GKFFLFLFAW_					0	0	0			REV__ENST00000538502.5_2_1:109856041-109856413:-|nuORF	REV__ENST00000538502.5_2_1:109856041-109856413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.90234373143335	3	425.902344	1274.6852	1.7279	0.00073591	-6.3929	-0.0027227	-4.665	-0.0019868	425.8994051130604	25.491	0.096497	25.491	25.467	25.564	0	1416	31	0.76547134	0.018530905	0.76547134	464.8684	0	11.253723						98	5	3	NaN	NaN	NaN	0.71736	1	18320	18320		3.261	0.70047	1	7741	+		7924	12685	4567	4661	6260	6260					0.058846601674531485
GKFFLFLFAW	10	Unmodified						0	0	0			REV__ENST00000538502.5_2_1:109856041-109856413:-|nuORF	REV__ENST00000538502.5_2_1:109856041-109856413:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	425.902344	1274.6852	1.7279	0.00073591	-6.3929	-0.0027227	-4.665	-0.0019868	425.8994051130604	25.491	0.096497	25.491	25.467	25.564	0	1416	31	0.76547134	0.018530905	0.76547134	464.8684		11.253723	0	0	0	NaN	3.261	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7741	+		7925	12685	4567	4661							0.058846601674531485
GKGAAKLR	8	Unmodified	_GKGAAKLR_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.5100972196001	1	800.510097	799.502821	2.0717	0.0016584	-4.6804	-0.0037467	-2.6087	-0.0020883	800.506584984747	55.701	0.14446	55.701	55.677	55.821	0	360	76	1.405474	0.044620156	1.405474	286.32693	0	9.090149						243	7	2	NaN	NaN	NaN	0.84887	1	4745	4745		0.32989	0	1	47374			7926	308	4568	4662	6261	6261					0.09504945545370447
GKGAKASA	8	Unmodified	_GKGAKASA_					0	0	0			REV__ENSG00000126947|ENST00000372829|ARMCX1	REV__ENSG00000126947|ENST00000372829|ARMCX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3940644088	1	689.394064	688.386788	1.0881	0.00075013	-6.1218	-0.0042203	-5.0337	-0.0034702	689.3898679977643	28.701	0.16891	28.692	28.668	28.837	-0.0083504	630	82	1.2441287	0.04865992	1.2426093	254.14694	0	9.940094						223	8	4	NaN	NaN	NaN	0.84727	1	2922	2922		1.2418	0	1	29266	+		7927	9428	4569	4663	6262	6262					0.03013001974659346
GKGAKASA	8	Unmodified						0	0	0			REV__ENSG00000126947|ENST00000372829|ARMCX1	REV__ENSG00000126947|ENST00000372829|ARMCX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	689.394064	688.386788	1.7355	0.0011964	-4.7706	-0.0032888	-3.0351	-0.0020924	689.3911724994458	28.701	0.1448	28.701	28.677	28.822	0	633	73	1.2423272	0.04325092	1.2423272	253.77895		8.835175	0.0045432	0.0004994	-0.000141	NaN	1.2418	180	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26313	+		7928	9428	4569	4663							0.03013001974659346
GKGAKASA	8	Unmodified						0	0	0			REV__ENSG00000126947|ENST00000372829|ARMCX1	REV__ENSG00000126947|ENST00000372829|ARMCX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	689.394064	688.386788	1.0881	0.00075013	-6.1218	-0.0042203	-5.0337	-0.0034702	689.3898679977643	28.701	0.16891	28.692	28.668	28.837	-0.0083504	630	82	1.2441287	0.04865992	1.2426093	254.14694		9.940094	-0.0045432	-0.0004321	0.000141	NaN	1.2418	223	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29266	+		7929	9428	4569	4663							0.03013001974659346
GKGATAKR	8	Unmodified	_GKGATAKR_					0	0	0		ENST00000547364.1_1_19:58514673-58520859:+|nuORF;ENST00000550135.5_1_19:58520661-58520859:+|nuORF	ENST00000547364.1_1_19:58514673-58520859:+|nuORF	ENST00000547364.1_1_19:58514673-58520859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4737117133001	1	788.473712	787.466435	2.2761	0.0017946	6.2189	0.0049035	8.495	0.0066981	788.4787760159406	56.013	0.16799	56.013	55.989	56.157	0	510	208	1.316029	0.124061346	1.316029	268.1741	0	25.28064						459	8	5	NaN	NaN	NaN	0.84887	1	4598	4598		0.32989	0	1	243220			7930	7530	4570	4664	6263	6263					0.06420068648651522
GKGEGVAY	8	Unmodified	_GKGEGVAY_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.3886446798999	1	780.388645	779.381368	1.1106	0.00086673	0.69702	0.00054394	1.8077	0.0014107	780.388288290656	33.431	0.072414	33.431	33.407	33.48	0	534	40	1.3016734	0.023338914	1.3016734	265.29596	0	4.7567444						68	4	2	NaN	NaN	NaN	0.80071	1	4476	4476		9.1232	3.6573	1	4154.2			7931	3142;2951	4571	4665	6264	6264					-0.017147216078228666
GKGGGGES	8	Unmodified	_GKGGGGES_					0	0	0			REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	324.65101038065	2	324.65101	647.287468	0.85928	0.00027897	5.0849	0.0016508	5.9442	0.0019298	324.6530067761326	38.155	0.21623	38.155	38.059	38.275	0	1533	73	0.6930556	0.04467249	0.6930556	283.49182	0	18.273102						278	10	3	NaN	NaN	NaN	0.84887	1	1990	1990		0.32989	0	1	22229	+		7932	8118	4572	4666	6265	6265					-0.05028440710088944
GKGKGGAL	8	Unmodified	_GKGKGGAL_					0	0	0			REV__ENST00000343253.11_1_1:93645610-93648926:+|nuORF	REV__ENST00000343253.11_1_1:93645610-93648926:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.4147998509001	1	687.4148	686.407523	1.386	0.00095273	-5.4469	-0.0037443	-4.0609	-0.0027916	687.4101449804881	30.92	0.28964	30.915	30.771	31.06	-0.0050716	624	142	1.247731	0.0847224	1.2462115	254.89714	0	17.30783						717	13	4	NaN	NaN	NaN	0.84692	1	2883	2883		1.4396	0	1	110670	+		7933	11795	4573	4667	6266	6266					0.05177592354323224
GKGVALFL	8	Unmodified	_GKGVALFL_					0	0	0			REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.4978011988	1	804.497801	803.490525	2.005	0.001613	-11.548	-0.0092906	-9.5434	-0.0076777	804.4869295104118	58.293	0.023991	58.293	58.293	58.317	0	483	49	1.3321642	0.028671265	1.3321642	271.3694	0	5.840515						70	2	3	NaN	NaN	NaN	0.84876	1	4789	4789		0.39566	0	1	8077.9	+		7934	12935	4574	4668	6267	6267					0.08091909082315851
GKGVALFL	8	Unmodified						0	0	0			REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	804.497801	803.490525	2.005	0.001613	-11.548	-0.0092906	-9.5434	-0.0076777	804.4869295104118	58.293	0.023991	58.293	58.293	58.317	0	483	49	1.3321642	0.028671265	1.3321642	271.3694		5.840515	0.0014578	-0.0016006	-0.00013621	NaN	0.39566	70	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8077.9	+		7935	12935	4574	4668							0.08091909082315851
GKGVALFL	8	Unmodified						0	0	0			REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	REV__ENST00000593075.1_1_19:36606086-36606371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	804.497801	803.490525	-0.07019	-5.6468E-05	-8.5907	-0.0069112	-8.6609	-0.0069677	804.4911411230132	58.29	0.048019	58.29	58.29	58.338	-0.00048065	480	49	1.3339561	0.028668165	1.3324367	271.73438		5.8398743	-0.0014578	0.00077887	0.00013621	NaN	0.39566	90	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9178.3	+		7936	12935	4574	4668							0.08091909082315851
GKGVGFGG	8	Unmodified	_GKGVGFGG_					0	0	0			REV__ENST00000257963.8_1_12:52388897-52389161:+|nuORF	REV__ENST00000257963.8_1_12:52388897-52389161:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3569506210001	1	678.356951	677.349674	1.2172	0.00082572	-0.049183	-3.3363E-05	1.168	0.00079235	678.3567259382002	29.521	0.048267	29.514	29.466	29.514	-0.0070648	1071	61	0.977233	0.036599934	0.97571355	199.68967	0	7.478897						70	3	2	NaN	NaN	NaN	0.84651	1	2705	2705		1.6704	1.2747	1	6095.8	+		7937	11534	4575	4669	6268	6268					-0.001906695710886197
GKHAPIPL	8	Unmodified	_GKHAPIPL_					0	0	0			REV__ENST00000462090.5_1_7:100225070-100228611:-|nuORF	REV__ENST00000462090.5_1_7:100225070-100228611:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.5039492092002	1	832.503949	831.496673	2.0097	0.0016731	0.95576	0.00079568	2.9654	0.0024687	832.5042339511663	55.821	0.12008	55.821	55.773	55.893	0	435	103	1.360811	0.060868025	1.360811	277.04788	0	12.39212						228	6	3	NaN	NaN	NaN	0.84887	1	5161	5161		0.32989	0	1	64971	+		7938	12267	4576	4670	6269	6269					0.07418427313859866
GKHKPGAA	8	Unmodified	_GKHKPGAA_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4365979255	1	765.436598	764.429321	-0.0045292	-3.4668E-06	1.741	0.0013326	1.7365	0.0013292	765.438370553826	55.65	0.072067	55.65	55.602	55.674	-0.00059128	471	67	1.3393306	0.039410353	1.3378111	273.06326	0	8.034973						97	4	2	NaN	NaN	NaN	0.84887	1	4206	4206		0.32989	0.32989	1	7251.9	+		7939	8654	4577	4671	6270	6270					0.03768397102885501
GKIPRFRV	8	Unmodified	_GKIPRFRV_					0	0	0			REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B	REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.6101456152002	1	972.610146	971.602869	-0.33477	-0.0003256	-4.4191	-0.0042981	-4.7539	-0.0046237	972.6063701703462	54.594	0.12047	54.593	54.545	54.666	-0.0006218	162	58	1.5228153	0.033660054	1.5212959	309.30264	0	6.836792						177	6	3	NaN	NaN	NaN	0.84692	1	7515	7515		1.4396	0.19772	1	21846	+		7940	9074	4578	4672	6271	6271					0.11593182879175856
GKKAAAAA	8	Unmodified	_GKKAAAAA_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.4147998508998	1	687.4148	686.407523	1.2034	0.00082725	-6.5922	-0.0045316	-5.3888	-0.0037043	687.4101608406646	30.896	0.16896	30.891	30.794	30.963	-0.0057545	1248	79	0.8689189	0.047889054	0.86739945	177.51018	0	9.783188						277	8	3	NaN	NaN	NaN	0.84945	1	2882	2882		0	0	1	31217			7941	306	4579	4673	6272	6272					0.051775923543004865
GKKAAAAA	8	Unmodified						0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	687.4148	686.407523	1.3583	0.00093374	-6.1105	-0.0042005	-4.7522	-0.0032667	687.4107799618928	30.922	0.14478	30.922	30.849	30.994	0	1251	73	0.8670771	0.044214845	0.8670771	177.13393		9.032593	0.015463	0.00018022	-0.00016117	NaN	0	295	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33411			7942	306	4579	4673							0.051775923543004865
GKKGATPG	8	Unmodified	_GKKGATPG_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.4097144730001	1	715.409714	714.402438	1.3438	0.00096137	-3.5581	-0.0025455	-2.2143	-0.0015841	715.4078197187545	53.506	0.11977	53.506	53.434	53.554	0	627	58	1.24593	0.03422022	1.24593	254.33412	0	6.985443						163	6	3	NaN	NaN	NaN	0.84887	1	3510	3510		0.32989	0.32989	1	14216			7943	1986	4580	4674	6273	6273					0.033812884917210795
GKKIPMPT	8	Unmodified	_GKKIPMPT_					0	0	0			REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.5069856766	1	871.506986	870.499709	1.6868	0.0014701	-4.5379	-0.0039548	-2.8511	-0.0024847	871.5035239759793	52.859	0.071808	52.859	52.859	52.93	0	543	40	1.296287	0.023343801	1.296287	263.71912	0	4.749115						78	4	3	NaN	NaN	NaN	0.84692	1	5668	5668		1.4396	0	1	6442.3	+		7944	8178	4581	4675	6274	6274					0.05927934376336452
GKKIPMPT	8	Unmodified						0	0	0			REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	871.506986	870.499709	1.6868	0.0014701	-4.5379	-0.0039548	-2.8511	-0.0024847	871.5035239759793	52.859	0.071808	52.859	52.859	52.93	0	543	40	1.296287	0.023343801	1.296287	263.71912		4.749115	-0.010981	-0.0012591	-0.0010359	NaN	1.4396	78	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6442.3	+		7945	8178	4581	4675							0.05927934376336452
GKKIPMPT	8	Unmodified						0	0	0			REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	REV__CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	871.506986	870.499709	0.044357	3.8657E-05	-0.55119	-0.00048037	-0.50684	-0.00044171	871.5064309689338	52.881	0.048008	52.881	52.881	52.929	-0.00045776	537	43	1.2998781	0.025135517	1.2983587	264.4497		5.113617	0.010981	0.0022153	0.0010359	NaN	1.4396	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3331.6	+		7946	8178	4581	4675							0.05927934376336452
GKKKPAKH	8	Unmodified	_GKKKPAKH_					0	0	0			REV__nc|ENSG00000139220|O75334-8|PPFIA2	REV__nc|ENSG00000139220|O75334-8|PPFIA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.5679464495	1	893.567946	892.56067	0.11352	0.00010144	0.2326	0.00020785	0.34612	0.00030928	893.567799191832	55.242	0.024101	55.242	55.242	55.266	-0.00061798	312	46	1.433996	0.02671516	1.4324765	291.6227	0	5.4329224						47	2	2	NaN	NaN	NaN	0.84887	1	5848	5848		0.32989	0.32989	1	4251.1	+		7947	9761	4582	4676	6275	6275					0.11009207470783622
GKLHGGLA	8	Unmodified	_GKLHGGLA_					0	0	0			REV__nc|ENSG00000154359|Q17RB8-2|LONRF1	REV__nc|ENSG00000154359|Q17RB8-2|LONRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.72431270949994	2	376.724313	751.434072	2.5267	0.00095185	-5.681	-0.0021402	-3.1543	-0.0011883	376.72222879524634	26.432	0.048264	26.421	26.397	26.445	-0.011137	1419	28	0.76361835	0.016675055	0.7620989	311.46115	0	6.801361						42	3	2	NaN	NaN	NaN	0.84876	1	4012	4012		0.39566	0	1	2608.5	+		7948	10093	4583	4677	6276	6276					0.04841281245649043
GKLVAKRRAY	10	Unmodified	_GKLVAKRRAY_					0	0	0		USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	USP9X-BLVRB|1|fusion	USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.91201330393335	3	387.912013	1160.71421	0.93737	0.00036362	3.0064	0.0011662	3.9438	0.0015298	388.2470707433854	33.14	0.096451	33.138	33.09	33.186	-0.0024757	1479	61	0.72651637	0.03715837	0.7249969	441.67444	0	22.589874						124	5	3	NaN	NaN	NaN	0.77514	1	14669	14669		1.6985	0.17289	1	13701			7949	2416	4584	4678	6277	6277					0.14028197516472574
GKNGIGFG	8	Unmodified	_GKNGIGFG_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3940644088001	1	749.394064	748.386788	0.72342	0.00054212	8.1638	0.0061179	8.8872	0.00666	749.3995556044223	31.404	0.14478	31.404	31.38	31.525	0	567	61	1.2819146	0.035942435	1.2819146	261.45602	0	7.330719						163	7	3	NaN	NaN	NaN	0.59262	1	4026	4026		25.752	14.203	1	14763			7950	4669	4585	4679	6278	6278					0.002530019746700418
GKNGIGFG	8	Unmodified	_GKNGIGFG_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3940644088001	1	749.394064	748.386788	1.0096	0.00075662	5.3255	0.0039909	6.3351	0.0047475	749.3975915213758	31.427	0.096519	31.423	31.375	31.471	-0.0044155	567	73	1.2819146	0.043121696	1.2803952	261.45602	0	8.794983						160	5	2	NaN	NaN	NaN	0.79379	1	3949	3949		10.052	2.5112	1	15733			7951	4669	4585	4679	6279	6279					0.002530019746700418
GKPGGKAP	8	Unmodified	_GKPGGKAP_					0	0	0		ENST00000399206.4_1_14:50472885-50473008:-|nuORF	ENST00000399206.4_1_14:50472885-50473008:-|nuORF	ENST00000399206.4_1_14:50472885-50473008:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4147998509	1	711.4148	710.407523	-0.16543	-0.00011769	-1.7226	-0.0012255	-1.8881	-0.0013432	711.4132587479934	53.624	0.047977	53.623	53.599	53.647	-0.00059128	639	55	1.2387238	0.03242767	1.2372043	252.88986	0	6.6202545						48	3	2	NaN	NaN	NaN	0.84727	1	3380	3380		1.2418	0	1	4358.6			7952	6820	4586	4680	6280	6280					0.0407359235431386
GKPGKGGG	8	Unmodified	_GKPGKGGG_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3678496583002	1	657.36785	656.360573	1.246	0.00081906	1.0628	0.00069868	2.3088	0.0015177	657.3682928950941	27.567	0.1448	27.567	27.519	27.664	0	771	73	1.1592519	0.043459773	1.1592519	237.03369	0	8.886276						178	7	2	NaN	NaN	NaN	0.84945	1	2202	2202		0	0	1	35672			7953	4210	4587	4681	6281	6281					0.018647328031988764
GKPGKGGG	8	Unmodified	_GKPGKGGG_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3678496583002	1	657.36785	656.360573	0.91825	0.00060363	0.73697	0.00048446	1.6552	0.0010881	657.3680590707914	27.59	0.12067	27.581	27.533	27.653	-0.009552	765	70	1.1628724	0.041633368	1.161353	237.77399	0	8.512817						149	6	2	NaN	NaN	NaN	0.84945	1	2120	2120		0	0	1	35691			7954	4210	4587	4681	6282	6282					0.018647328031988764
GKPGKGGG	8	Unmodified	_GKPGKGGG_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3678496583002	1	657.36785	656.360573	1.3212	0.00086854	4.2166	0.0027718	5.5378	0.0036404	657.3707333409053	40.583	0.048016	40.589	40.565	40.613	0.0067558	759	34	1.1664921	0.01990521	1.1649727	238.51408	0	4.070038						48	3	2	NaN	NaN	NaN	0.84945	1	2121	2121		0	0	1	4462.6			7955	4210	4587	4681	6283	6283					0.018647328031988764
GKPGKILK	8	Unmodified	_GKPGKILK_					0	0	0			REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF	REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.5665494660002	1	840.566549	839.559273	-0.60909	-0.00051198	4.5349	0.0038118	3.9258	0.0032999	840.5702875795228	58.195	0.04792	58.194	58.17	58.218	-0.00048447	360	55	1.405474	0.032114625	1.4039545	286.09613	0	6.5371704						91	3	3	NaN	NaN	NaN	0.84887	1	5137	5137		0.32989	0	1	11163	+		7956	8613	4588	4682	6284	6284					0.13307573382041937
GKPGKILK	8	Unmodified						0	0	0			REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF	REV__ENST00000477312.1_1_3:196863310-196867015:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	840.566549	839.559273	-0.60909	-0.00051198	4.5349	0.0038118	3.9258	0.0032999	840.5702875795228	58.195	0.04792	58.194	58.17	58.218	-0.00048447	360	55	1.405474	0.032114625	1.4039545	286.09613		6.5371704	-0.0014435	0.0015932	0.0001324	NaN	0.32989	91	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11163	+		7957	8613	4588	4682							0.13307573382041937
GKPHGRGV	8	Unmodified	_GKPHGRGV_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4583960001002	1	807.458396	806.45112	1.7917	0.0014467	-0.60731	-0.00049038	1.1844	0.00095632	807.4577470066486	29.57	0.096518	29.57	29.522	29.618	0	540	49	1.2980826	0.02872634	1.2980826	264.4104	0	5.851349						130	5	3	NaN	NaN	NaN	0.84887	1	4847	4847		0.32989	0	1	13158			7958	300	4589	4683	6285	6285					0.040152018514731935
GKSANMQHSDF	11	Unmodified	_GKSANMQHSDF_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.8487499368	3	407.84875	1220.52442	1.1438	0.0004665	5.5361	0.0022579	6.6799	0.0027244	407.8512298891316	29.738	0.12064	29.731	29.683	29.803	-0.0070648	1452	40	0.74322224	0.024117589	0.7417028	451.57083	0	14.653473						114	6	3	NaN	NaN	NaN	0.74155	1	16303	16303		1.8502	0	1	6801.2	+		7959	10599	4590	4684	6286	6286					-0.07702082278888156
GKSKFFVII	9	Unmodified	_GKSKFFVII_					0	0	0			REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.8209527489001	2	519.820953	1037.62735	0.64701	0.00033633	-0.91852	-0.00047747	-0.27151	-0.00014114	519.8210026702619	31.476	0.21722	31.471	31.447	31.664	-0.0044155	1254	79	0.8652351	0.047873557	0.86371565	351.1625	0	19.42984						296	10	2	NaN	NaN	NaN	0.59509	1	9905	9905		5.6942	0.78442	1	27234	+		7960	10526	4591	4685	6287	6287					0.11004398242039315
GKSSPSLSW	9	Unmodified	_GKSSPSLSW_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4785223197001	1	948.478522	947.471246	1.7837	0.0016918	-4.852	-0.004602	-3.0682	-0.0029102	948.472544212104	27.784	0.21717	27.784	27.639	27.857	0	318	85	1.4304334	0.049871087	1.4304334	290.64215	0	10.133026						349	10	2	NaN	NaN	NaN	0.38313	1	7015	7015		14.425	0.38343	1	63478	+		7961	9850	4592	4686	6288	6288					-0.004590919992324416
GKTGSGKS	8	Unmodified	_GKTGSGKS_					0	0	0		ENSG00000133561|ENST00000328902|GIMAP6;ENSG00000179144|ENST00000313543|GIMAP7	ENSG00000133561|ENST00000328902|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.383893653	1	721.383894	720.376617	1.565	0.001129	-10.365	-0.0074774	-8.8003	-0.0063484	721.375987239769	54.908	0.095959	54.908	54.884	54.98	0	555	178	1.2891023	0.10620606	1.2891023	263.10596	0	21.676682						314	5	4	NaN	NaN	NaN	0.84897	1	3594	3594		0.27539	0	1	69547			7962	2826	4593	4687	6289	6289					0.0052439424941894686
GKTYQTLEE	9	Unmodified	_GKTYQTLEE_					0	0	0		ENSG00000188730|ENST00000340652|VWC2	ENSG00000188730|ENST00000340652|VWC2	ENSG00000188730|ENST00000340652|VWC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.76402876575	2	534.764029	1067.5135	1.4845	0.00079386	-0.77828	-0.00041619	0.70623	0.00037767	535.2658496824249	25.37	0.19301	25.358	25.31	25.503	-0.012011	1251	88	0.8670771	0.053429186	0.8655577	351.78107	0	21.676697						346	9	4	NaN	NaN	NaN	0.51576	1	11168	11168		8.962	0.71716	1	46710			7963	5561	4594	4688	6290	6290					-0.017551613815157907
GKVGPGNH	8	Unmodified	_GKVGPGNH_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.4002124192	1	765.400212	764.392936	1.7476	0.0013376	4.9607	0.003797	6.7084	0.0051346	765.4054851621289	54.932	0.11993	54.932	54.884	55.004	0	501	46	1.3214091	0.026892185	1.3214091	269.40967	0	5.482788						102	6	2	NaN	NaN	NaN	0.84727	1	4276	4276		1.2418	0.91196	1	7071.5			7964	383	4595	4689	6291	6291					0.0013152020617326343
GKVLTANI	8	Unmodified	_GKVLTANI_					0	0	0			REV__nc|ENSG00000140367|Q8WVN8-4|UBE2Q2	REV__nc|ENSG00000140367|Q8WVN8-4|UBE2Q2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4985294802999	1	815.498529	814.491253	0.090635	7.3912E-05	-6.8738	-0.0056056	-6.7832	-0.0055317	815.49268800947	55.65	0.096123	55.65	55.578	55.674	-0.00059128	396	49	1.3840506	0.028585792	1.3825312	281.8749	0	5.8217773						98	5	2	NaN	NaN	NaN	0.84782	1	4844	4844		0.92586	0	1	6152.8	+		7965	9794	4596	4690	6292	6292					0.07658703731362948
GKYEPGFFPK	10	Unmodified	_GKYEPGFFPK_					0	0	0		ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.3031241365001	2	585.303124	1168.5917	0.90147	0.00052763	3.119	0.0018255	4.0204	0.0023532	585.8073034419367	35.288	0.16894	35.287	35.215	35.384	-4.5776E-05	1197	61	0.9001988	0.036750257	0.8986794	364.81616	0	14.893494						177	8	2	NaN	NaN	NaN	0.62092	1	14909	14909		13.463	1.4144	1	14760			7966	5338	4597	4691	6293	6293					0.014143159943841965
GKYEPGFFPK	10	Unmodified						0	0	0		ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.303124	1168.5917	1.1001	0.00064391	-2.7238	-0.0015942	-1.6236	-0.00095031	585.298816317734	35.023	0.096519	35.023	35.023	35.12	0	1185	46	0.90755045	0.027561188	0.90755045	367.79553		11.169495	-0.132	-0.0035893	0.0044355	NaN	13.463	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7382			7967	5338	4597	4691							0.014143159943841965
GKYEYLHYI	9	Unmodified	_GKYEYLHYI_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.8694797872334	3	395.86948	1184.58661	1.5598	0.00061748	7.5569	0.0029915	9.1167	0.003609	395.8724194571789	17.141	0.12004	17.141	17.117	17.237	0	1452	43	0.74322224	0.025977015	0.74322224	451.7237	0	15.788574						197	6	4	NaN	NaN	NaN	0.33629	1	16000	16000		14.854	6.5765	1	42076	+		7968	13571	4598	4692	6294	6294					0.0017001213177536556
GKYEYLHYI	9	Unmodified						0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	395.86948	1184.58661	1.5598	0.00061748	7.5569	0.0029915	9.1167	0.003609	395.8724194571789	17.141	0.12004	17.141	17.117	17.237	0	1452	43	0.74322224	0.025977015	0.74322224	451.7237		15.788574	-0.075434	-0.0011491	0.00075972	NaN	14.854	197	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42076	+		7969	13571	4598	4692							0.0017001213177536556
GKYWGKFYM	9	Unmodified	_GKYWGKFYM_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2864198273	2	590.28642	1178.55829	1.3816	0.00081554	4.0948	0.0024171	5.4764	0.0032326	590.2872262597455	36.446	0.12062	36.446	36.446	36.567	0	1200	31	0.89836043	0.01838702	0.89836043	364.03522	0	7.4508057						76	6	2	NaN	NaN	NaN	0.62619	1	15780	15780		4.4131	0	1	5987.1			7970	4514	4599	4693	6295	6295					-0.02385009049180553
GLACTIVF	8	Unmodified	_GLACTIVF_					0	0	0		ENSG00000237388|ENST00000446524|OR4A47	ENSG00000237388|ENST00000446524|OR4A47	ENSG00000237388|ENST00000446524|OR4A47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4382374094001	1	823.438237	822.430961	1.3177	0.001085	-4.4401	-0.0036562	-3.1224	-0.0025711	823.434065278112	33.118	0.1689	33.118	33.069	33.238	0	489	76	1.3285799	0.04479158	1.3285799	270.53445	0	9.120789						248	8	3	NaN	NaN	NaN	0.62311	1	5049	5049		23.85	2.898	1	26990			7971	6055	4600	4694	6296	6296					0.012642700766377857
GLAGAHTW	8	Unmodified	_GLAGAHTW_					0	0	0		ENST00000424766.5_2_2:190649358-190656524:+|nuORF;ENST00000446877.5_2_2:190649358-190650191:+|nuORF	ENST00000424766.5_2_2:190649358-190656524:+|nuORF	ENST00000424766.5_2_2:190649358-190656524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4049634460999	1	812.404963	811.397687	1.8534	0.0015057	-5.3869	-0.0043764	-3.5335	-0.0028706	812.4004148562489	28.798	0.12067	28.798	28.774	28.894	0	474	64	1.3375392	0.037624955	1.3375392	272.41965	0	7.663147						130	6	3	NaN	NaN	NaN	0.79379	1	4909	4909		10.052	0.92837	1	10005			7972	6937	4601	4695	6297	6297					-0.01555595651063868
GLAGGHVR	8	Unmodified	_GLAGGHVR_					0	0	0			REV__nc|ENSG00000160410|Q8TBC3-2|SHKBP1	REV__nc|ENSG00000160410|Q8TBC3-2|SHKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	766.4318468986	1	766.431847	765.42457	1.7317	0.0013272	6.0493	0.0046363	7.781	0.0059636	766.4367475023124	55.629	0.072113	55.629	55.629	55.701	0	465	76	1.3429124	0.044782043	1.3429124	273.78726	0	9.129974						111	4	2	NaN	NaN	NaN	0.84887	1	4289	4289		0.32989	0	1	9882.9	+		7973	10202	4602	4696	6298	6298					0.03247512960126642
GLARPRLK	8	Unmodified	_GLARPRLK_					0	0	0		ENST00000588870.1_1_17:40811475-40811571:+|nuORF	ENST00000588870.1_1_17:40811475-40811571:+|nuORF	ENST00000588870.1_1_17:40811475-40811571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.5944955510001	1	910.594496	909.587219	1.9488	0.0017745	-1.0353	-0.00094275	0.91345	0.00083178	910.5933146862282	55.244	0.02409	55.244	55.244	55.268	0	270	46	1.458913	0.026675463	1.458913	296.6056	0	5.423279						58	2	2	NaN	NaN	NaN	0.84876	1	6223	6223		0.39566	0	1	6985.7			7974	7716	4603	4697	6299	6299					0.1288089636212817
GLARPRLK	8	Unmodified						0	0	0		ENST00000588870.1_1_17:40811475-40811571:+|nuORF	ENST00000588870.1_1_17:40811475-40811571:+|nuORF	ENST00000588870.1_1_17:40811475-40811571:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	910.594496	909.587219	0.19509	0.00017765	0.55378	0.00050427	0.74887	0.00068192	910.5943733625508	55.242	0.024101	55.242	55.242	55.266	-0.00061798	270	52	1.458913	0.03023231	1.4573935	296.6056		6.146393	-0.001402	0.00080417	-0.00075972	NaN	0.39566	55	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6860.7			7975	7716	4603	4697							0.1288089636212817
GLARRGSP	8	Unmodified	_GLARRGSP_					0	0	0		ENST00000382743.8_2_11:236272-236320:-|nuORF	ENST00000382743.8_2_11:236272-236320:-|nuORF	ENST00000382743.8_2_11:236272-236320:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.2381185765	2	407.238119	812.461684	2.0532	0.00083615	-5.7722	-0.0023507	-3.719	-0.0015145	407.23608440707534	13.949	0.04799	13.938	13.89	13.938	-0.010672	1467	31	0.7339432	0.018563092	0.7324238	298.95508	0	7.561249						40	3	2	NaN	NaN	NaN	0.79379	1	4819	4819		10.052	1.7613	1	2879.4			7976	6744	4604	4698	6300	6300					0.047951845058946674
GLAYEDNLL	9	Unmodified	_GLAYEDNLL_					0	0	0			REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.25583959290003	2	504.25584	1006.49713	1.7098	0.00086216	0.76206	0.00038427	2.4718	0.0012464	504.25613502917236	26.553	0.072414	26.553	26.529	26.601	0	1314	58	0.8283535	0.03507352	0.8283535	336.32996	0	14.240631						82	4	2	NaN	NaN	NaN	0.39244	1	8838	8838		14.042	1.9929	1	7314.1	+		7977	12441	4605	4699	6301	6301					-0.005862425476038879
GLAYEDNLL	9	Unmodified						0	0	0			REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	504.25584	1006.49713	1.7098	0.00086216	0.76206	0.00038427	2.4718	0.0012464	504.25613502917236	26.553	0.072414	26.553	26.529	26.601	0	1314	58	0.8283535	0.03507352	0.8283535	336.32996		14.240631	0.0054688	-0.0030995	0.00075972	NaN	14.042	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7314.1	+		7978	12441	4605	4699							-0.005862425476038879
GLAYEDNLL	9	Unmodified						0	0	0			REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.25584	1006.49713	1.3031	0.00065708	6.9091	0.0034839	8.2122	0.004141	504.2615193193092	26.553	0.072397	26.542	26.494	26.566	-0.010645	1314	55	0.8283535	0.033214986	0.8268341	336.32993		13.485992	-0.0054688	0.0030999	-0.00075972	NaN	14.042	95	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7565.3	+		7979	12441	4605	4699							-0.005862425476038879
GLDLDIVRLN	10	Unmodified	_GLDLDIVRLN_					0	0	0			REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3245878601001	2	564.324588	1126.63462	1.6376	0.00092414	0.014865	8.3886E-06	1.6525	0.00093253	564.324954033289	23.73	0.12049	23.717	23.669	23.789	-0.013048	1209	67	0.892844	0.04046464	0.8913246	361.9927	0	16.405884						179	6	3	NaN	NaN	NaN	0.5626	1	13530	13530		16.858	2.4333	1	16421	+		7980	12083	4606	4700	6302	6302					0.07637086051818187
GLDLDIVRLN	10	Unmodified						0	0	0			REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.324588	1126.63462	1.9589	0.0011054	0.88162	0.00049752	2.8405	0.001603	564.3248808644729	23.706	0.072285	23.706	23.658	23.73	0	1224	49	0.883646	0.029438376	0.883646	358.2635		11.935425	-0.0053725	0.00052715	-0.0038393	NaN	16.858	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9285.4	+		7981	12083	4606	4700							0.07637086051818187
GLDLDIVRLN	10	Unmodified						0	0	0			REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	REV__ENST00000414314.1_1_5:142006350-142006506:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.324588	1126.63462	1.6376	0.00092414	0.014865	8.3886E-06	1.6525	0.00093253	564.324954033289	23.73	0.12049	23.717	23.669	23.789	-0.013048	1209	67	0.892844	0.04046464	0.8913246	361.9927		16.405884	0.0053725	-0.00045111	0.0038393	NaN	16.858	179	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16421	+		7982	12083	4606	4700							0.07637086051818187
GLDTVVALL	9	Unmodified	_GLDTVVALL_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	0.8274	0.00074511	0.59966	0.00054002	1.4271	0.0012851	900.5404832576208	31.645	0.072407	31.64	31.592	31.664	-0.0044174	336	64	1.419741	0.0374372	1.4182216	288.6898	0	7.6124573						143	4	2	NaN	NaN	NaN	0.47587	1	5958	5958		10.605	3.0646	1	39053			7983	4422	4607	4701	6303	6303					0.07899839700041866
GLEEVRVR	8	Unmodified	_GLEEVRVR_					0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.5476049379001	1	957.547605	956.540328	1.5111	0.0014469	-1.3307	-0.0012742	0.18039	0.00017273	957.5465055287654	28.918	0.072439	28.909	28.861	28.933	-0.0083504	312	49	1.433996	0.028503776	1.4324765	291.32642	0	5.790741						83	4	2	NaN	NaN	NaN	0.82797	1	7117	7117		5.4659	0	1	7773.6	+		7984	10092	4608	4702	6304	6304					0.060319920203255606
GLGGASGP	8	Unmodified	_GLGGASGP_					0	0	0			REV__ENST00000399211.7_1_17:16744211-16749072:-|nuORF	REV__ENST00000399211.7_1_17:16744211-16749072:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	308.15847127200004	2	308.158471	614.30239	1.4236	0.00043869	6.1185	0.0018855	7.542	0.0023241	308.1603518677984	35.046	0.12066	35.046	34.998	35.119	-4.5776E-05	1515	64	0.7042165	0.039043844	0.70269704	288.37576	0	15.988434						137	6	2	NaN	NaN	NaN	0.84727	1	918	918		1.2418	0	1	15064	+		7985	12029	4609	4703	6305	6305					-0.020189488420783164
GLGGGKFG	8	Unmodified	_GLGGGKFG_					0	0	0			REV__ENSG00000109079|ENST00000226225|TNFAIP1	REV__ENSG00000109079|ENST00000226225|TNFAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852002	1	692.372601	691.365324	1.3435	0.0009302	7.3897	0.0051164	8.7332	0.0060466	692.377874996087	32.707	0.19308	32.707	32.587	32.78	0	732	85	1.1827712	0.05063796	1.1827712	241.59268	0	10.3433075						270	9	3	NaN	NaN	NaN	0.84887	1	3060	3060		0.32989	0	1	45577	+		7986	9049	4610	4704	6306	6306					0.007296169459550583
GLGMCFSF	8	Unmodified	_GLGMCFSF_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.1853171867	2	431.185317	860.356081	1.2694	0.00054734	0.60191	0.00025953	1.8713	0.00080688	431.18602723295	36.254	0.048203	36.254	36.205	36.254	0	1401	37	0.77473325	0.022227407	0.77473325	315.27844	0	9.045441						45	3	2	NaN	NaN	NaN	0.80692	1	5531	5531		8.2903	2.8244	1	2814			7987	4714	4611	4705	6307	6307					-0.07968235726241346
GLGPGGTL	8	Unmodified	_GLGPGGTL_					0	0	0		ENST00000574992.5_1_17:79873894-79874056:-|nuORF	ENST00000574992.5_1_17:79873894-79874056:-|nuORF	ENST00000574992.5_1_17:79873894-79874056:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3722663342002	1	671.372266	670.36499	1.3762	0.00092392	5.9568	0.0039992	7.333	0.0049232	671.3762019590653	24.261	0.096498	24.261	24.237	24.333	0	645	151	1.2351195	0.09025085	1.2351195	252.43872	0	18.445847						273	5	3	NaN	NaN	NaN	0.80071	1	2610	2610		9.1232	0	1	107780			7988	7658	4612	4706	6308	6308					0.016621972261077644
GLGPNGPN	8	Unmodified	_GLGPNGPN_					0	0	0			REV__ENST00000409808.6_1_2:128431994-128432661:-|nuORF	REV__ENST00000409808.6_1_2:128431994-128432661:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3576789025001	1	725.357679	724.350402	1.2755	0.00092523	-5.0547	-0.0036665	-3.7792	-0.0027413	725.3542276315804	26.698	0.096588	26.698	26.674	26.77	0	645	64	1.2351195	0.037846565	1.2351195	252.06223	0	7.723694						132	5	3	NaN	NaN	NaN	0.83211	1	3672	3672		4.9097	0.85605	1	10782	+		7989	12060	4613	4707	6309	6309					-0.022798749220442005
GLGSPLMGL	9	Unmodified	_GLGSPLMGL_					0	0	0		ENSG00000197119|ENST00000359232|SLC25A29	ENSG00000197119|ENST00000359232|SLC25A29	ENSG00000197119|ENST00000359232|SLC25A29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.7334887998	2	422.733489	843.452425	1.3209	0.00055838	7.7683	0.0032839	9.0892	0.0038423	422.73666618073304	20.862	0.19261	20.862	20.838	21.031	0	1305	85	0.83389086	0.051651	0.83389086	339.45935	0	21.026031						320	9	3	NaN	NaN	NaN	0.67818	1	5310	5310		1.072	0	1	55098			7990	5680	4614	4708	6310	6310					0.024436551053554467
GLGSPLMGL	9	Unmodified						0	0	0		ENSG00000197119|ENST00000359232|SLC25A29	ENSG00000197119|ENST00000359232|SLC25A29	ENSG00000197119|ENST00000359232|SLC25A29	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	422.733489	843.452425	0.70897	0.00029971	9.236	0.0039044	9.945	0.0042041	422.7374880702136	20.911	0.14447	20.897	20.849	20.993	-0.014086	1308	79	0.83204526	0.047961593	0.8305259	338.70807		19.52417	0.017162	0.00057986	-0.0016825	NaN	1.072	330	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59948			7991	5680	4614	4708							0.024436551053554467
GLGVKCSK	8	Unmodified	_GLGVKCSK_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000527871.5_1_16:2012676-2013018:-|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.4443854198	1	791.444385	790.437109	1.3371	0.0010583	2.2786	0.0018034	3.6157	0.0028616	791.4463987355662	32.997	0.096584	32.997	32.973	33.069	0	492	40	1.3267875	0.023301601	1.3267875	270.34903	0	4.747986						81	5	2	NaN	NaN	NaN	0.82797	1	4632	4632		5.4659	0.55612	1	5262.3			7992	3297	4615	4709	6311	6311					0.03350788308148367
GLHGWFWNRKP	11	Unmodified	_GLHGWFWNRKP_					0	0	0			REV__nc|ENSG00000186204|Q9HCS2-2|CYP4F12	REV__nc|ENSG00000186204|Q9HCS2-2|CYP4F12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.36491303885	2	699.364913	1396.71527	1.811	0.0012666	-7.975	-0.0055774	-6.1639	-0.0043108	699.8608320644001	27.349	0.072405	27.339	27.315	27.387	-0.010126	1053	31	0.9882094	0.018282235	0.98669	399.71954	0	7.3949585						35	4	2	NaN	NaN	NaN	0.77278	1	19098	19098		1.5054	0.32859	1	2264.8	+		7993	10995	4616	4710	6312	6312					0.032784118853442124
GLLAGAAWP	9	Unmodified	_GLLAGAAWP_					0	0	0			REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4723147298	1	855.472315	854.465038	0.17608	0.00015063	-8.0267	-0.0068666	-7.8506	-0.0067159	855.4650110739816	57.019	0.024002	57.018	57.018	57.042	-0.00056458	303	43	1.4393384	0.024927616	1.437819	292.90726	0	5.0727844						43	2	2	NaN	NaN	NaN	0.6762	1	5323	5323		1.2418	0.16982	1	3158.3	+		7994	12424	4617	4711	6313	6313					0.03198434559897123
GLLIYKPPT	9	Unmodified	_GLLIYKPPT_					0	0	0			REV__ENST00000563678.1_1_16:31716740-31717107:+|nuORF	REV__ENST00000563678.1_1_16:31716740-31717107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.30513550920006	2	501.305136	1000.59572	1.3196	0.0006615	-9.0517	-0.0045376	-7.7321	-0.0038761	501.30047174439824	21.922	0.072281	21.908	21.86	21.932	-0.013897	1299	49	0.8375814	0.029524446	0.83606195	340.10376	0	11.988525						73	4	2	NaN	NaN	NaN	0.63698	1	8463	8463		3.9685	0.39873	1	7719.6	+		7995	12795	4618	4712	6314	6314					0.09544405488099983
GLLPGLCAEL	10	Unmodified	_GLLPGLCAEL_					0	0	0			REV__ENST00000437398.5_1_22:24812732-24812975:+|nuORF	REV__ENST00000437398.5_1_22:24812732-24812975:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.27297810105	2	493.272978	984.531403	1.5291	0.00075428	-8.9052	-0.0043927	-7.3761	-0.0036384	493.2690342287961	18.53	0.095936	18.516	18.492	18.588	-0.01395	1323	52	0.8228144	0.031395137	0.82129496	334.1815	0	12.750977						107	5	3	NaN	NaN	NaN	0.67523	1	7863	7863		9.746	0.78402	1	10206	+		7996	12184	4619	4713	6315	6315					0.03851882339631629
GLQSGQAT	8	Unmodified	_GLQSGQAT_					0	0	0		ENST00000569024.1_1_16:83945693-83946053:+|nuORF	ENST00000569024.1_1_16:83945693-83946053:+|nuORF	ENST00000569024.1_1_16:83945693-83946053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.3788082750999	1	761.378808	760.371532	0.8849	0.00067374	-1.935	-0.0014733	-1.0501	-0.00079951	761.3782927494327	43.511	0.35976	43.522	43.426	43.786	0.01099	495	115	1.3249949	0.068174124	1.3234755	270.16595	0	13.900696						912	16	4	NaN	NaN	NaN	0.84512	1	4143	4143		2.4615	0	1	151270			7997	7640	4620	4714	6316	6316					-0.018239096131992483
GLRHFWGLRVR	11	Unmodified	_GLRHFWGLRVR_					0	0	0		ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	349.95727792332497	4	349.957278	1395.80001	1.8959	0.00066348	-2.9977	-0.0010491	-1.1018	-0.00038559	349.95617532760724	19.708	0.072033	19.708	19.708	19.78	0	1500	28	0.71351165	0.016727626	0.71351165	577.2103	0	13.532166						55	4	2	NaN	NaN	NaN	0.59764	1	20031	20031		14.176	3.354	1	6001.4			7998	6037	4621	4715	6317	6317					0.11793782421955257
GLRHFWGLRVR	11	Unmodified	_GLRHFWGLRVR_					0	0	0		ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	349.95727792332497	4	349.957278	1395.80001	1.8398	0.00064384	0.30928	0.00010824	2.149	0.00075208	349.95780029987264	19.66	0.14404	19.66	19.516	19.66	0	1503	34	0.711653	0.02044487	0.711653	575.7067	0	16.539307						80	7	2	NaN	NaN	NaN	0.55071	1	20032	20032		16.659	3.5578	1	6651			7999	6037	4621	4715	6318	6318					0.11793782421955257
GLRYRALDK	9	Unmodified	_GLRYRALDK_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.5488520674999	3	364.548852	1090.62473	2.4969	0.00091025	-11.003	-0.0040111	-8.5059	-0.0031008	364.5452173800198	18.005	0.023947	18.005	18.005	18.029	0	1491	25	0.7190863	0.014863372	0.7190863	437.48666	0	9.042755						27	2	2	NaN	NaN	NaN	0.57723	1	12439	12439		6.4299	0.51015	1	1762.7	+		8000	8912	4622	4716	6319	6319					0.08303942837051181
GLSIATDLA	9	Unmodified	_GLSIATDLA_					0	0	0			REV__ENST00000452647.2_3_6:99979595-99979679:+|nuORF	REV__ENST00000452647.2_3_6:99979595-99979679:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	860.4723743093	1	860.472374	859.465098	2.1001	0.0018071	-0.61951	-0.00053308	1.4806	0.001274	860.4721550694567	23.73	0.072309	23.73	23.706	23.778	0	456	40	1.348284	0.023269296	1.348284	274.35226	0	4.734894						55	4	2	NaN	NaN	NaN	0.31737	1	5525	5525		17.799	0	1	4232.2	+		8001	12234	4623	4717	6320	6320					0.02974389769235586
GLSVAAVVL	9	Unmodified	_GLSVAAVVL_					0	0	0		ENST00000424164.1_1_1:53099333-53133078:+|nuORF;nc|ENSG00000182183|Q6UWV7-2|SHISAL2A;ENST00000440303.5_1_1:53099138-53125209:+|nuORF;ENSG00000182183|ENST00000517870|SHISAL2A	ENST00000424164.1_1_1:53099333-53133078:+|nuORF	ENST00000424164.1_1_1:53099333-53133078:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.763103519	2	414.763104	827.511654	1.7943	0.00074422	-1.667	-0.0006914	0.12736	5.2824E-05	414.76240673088625	17.453	0.095917	17.453	17.429	17.525	0	1383	37	0.7858409	0.022208154	0.7858409	319.99786	0	9.043243						116	5	3	NaN	NaN	NaN	0.10956	1	5118	5118		34.439	1.0135	1	17039			8002	5256	4624	4718	6321	6321					0.09099874391188223
GLSVAAVVL	9	Unmodified						0	0	0		ENST00000424164.1_1_1:53099333-53133078:+|nuORF;nc|ENSG00000182183|Q6UWV7-2|SHISAL2A;ENST00000440303.5_1_1:53099138-53125209:+|nuORF;ENSG00000182183|ENST00000517870|SHISAL2A	ENST00000424164.1_1_1:53099333-53133078:+|nuORF	ENST00000424164.1_1_1:53099333-53133078:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	414.763104	827.511654	1.4822	0.00061474	-2.4567	-0.0010189	-0.9745	-0.00040419	414.7621077580412	17.498	0.14402	17.484	17.436	17.58	-0.013569	1380	40	0.7876915	0.024057508	0.78617203	320.75143		9.796326	0.015559	-0.00034243	0.00016557	NaN	34.439	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20122			8003	5256	4624	4718							0.09099874391188223
GLTMTYDGNNP	11	Unmodified	_GLTMTYDGNNP_					0	0	0		ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1182.5095644516	1	1182.50956	1181.50229	1.7021	0.0020128	-9.0035	-0.010647	-7.3013	-0.0086339	1182.4995484436963	35.022	0.19308	35.022	34.998	35.191	-4.5776E-05	159	58	1.5245869	0.033656597	1.5230675	308.8921	0	6.8190613						332	9	4	NaN	NaN	NaN	0.77883	1	15277	15277		0.44583	0.17044	1	42407			8004	2880	4625	4719	6322	6322					-0.08120306747309769
GLVLFVLLI	9	Unmodified	_GLVLFVLLI_					0	0	0		ENST00000484147.5_1_1:114397100-114397559:-|nuORF	ENST00000484147.5_1_1:114397100-114397559:-|nuORF	ENST00000484147.5_1_1:114397100-114397559:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.6648665271001	1	986.664867	985.65759	0.19308	0.00019051	-0.98571	-0.00097257	-0.79263	-0.00078206	986.6643731216099	59.01	0.096054	59.01	58.938	59.034	-0.00045395	138	52	1.5369828	0.030091405	1.5354633	312.11795	0	6.110718						79	5	2	NaN	NaN	NaN	0.6762	1	7915	7915		1.2418	0	1	5794.7			8005	7226	4626	4720	6323	6323					0.1641875690722827
GLVLFVLLI	9	Unmodified						0	0	0		ENST00000484147.5_1_1:114397100-114397559:-|nuORF	ENST00000484147.5_1_1:114397100-114397559:-|nuORF	ENST00000484147.5_1_1:114397100-114397559:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	986.664867	985.65759	2.2241	0.0021945	-3.3358	-0.0032914	-1.1117	-0.0010969	986.6614790701318	58.988	0.072041	58.988	58.965	59.037	0	141	34	1.5352125	0.019475102	1.5352125	311.75845		3.954834	-0.010679	-0.0015679	-0.00012542	NaN	1.2418	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3324.3			8006	7226	4626	4720							0.1641875690722827
GLWGLGESH	9	Unmodified	_GLWGLGESH_					0	0	0			REV__CD1E|p.S56L|1|0.26|ENSG00000158488|chr1:158354485-158354485|C/T|missense_variant	REV__CD1E|p.S56L|1|0.26|ENSG00000158488|chr1:158354485-158354485|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.4632066065001	1	955.463207	954.45593	1.6454	0.0015721	7.3309	0.0070044	8.9763	0.0085765	955.4702777971277	53.314	0.096138	53.314	53.242	53.338	0	234	52	1.4802408	0.030200124	1.4802408	300.73068	0	6.135559						99	5	2	NaN	NaN	NaN	0.66196	1	7189	7189		2.4615	0	1	6764.4	+		8007	8189	4627	4721	6324	6324					-0.023119587964288257
GLWGLGESH	9	Unmodified						0	0	0			REV__CD1E|p.S56L|1|0.26|ENSG00000158488|chr1:158354485-158354485|C/T|missense_variant	REV__CD1E|p.S56L|1|0.26|ENSG00000158488|chr1:158354485-158354485|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	955.463207	954.45593	1.6454	0.0015721	7.3309	0.0070044	8.9763	0.0085765	955.4702777971277	53.314	0.096138	53.314	53.242	53.338	0	234	52	1.4802408	0.030200124	1.4802408	300.73068		6.135559	0.013127	-0.0011436	-0.00012833	NaN	2.4615	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6764.4	+		8008	8189	4627	4721							-0.023119587964288257
GMAAGALF	8	Unmodified	_GMAAGALF_					0	0	0		nc|ENSG00000125995|P60602-2|ROMO1;ENSG00000125995|ENST00000374077|ROMO1	nc|ENSG00000125995|P60602-2|ROMO1	nc|ENSG00000125995|P60602-2|ROMO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3650724663	1	737.365072	736.357796	1.2345	0.00091024	8.3596	0.0061641	9.5941	0.0070743	737.3718315587802	30.752	0.16887	30.746	30.698	30.866	-0.0057545	579	73	1.2747238	0.04316783	1.2732043	260.0658	0	8.806992						228	8	3	NaN	NaN	NaN	0.81214	1	3774	3774		7.5902	3.5366	1	31492			8009	2488	4628	4722	6325	6325					-0.020928586459831422
GMAEIVAAEA	10	Unmodified	_GMAEIVAAEA_					0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.4659087228999	1	961.465909	960.458632	1.0485	0.0010081	0.35026	0.00033676	1.3988	0.0013449	961.4669154217823	30.922	0.1689	30.922	30.873	31.042	0	303	85	1.4393384	0.049865842	1.4393384	292.39484	0	10.130005						369	8	3	NaN	NaN	NaN	0.56921	1	7342	7342		16.584	1.1215	1	96615	+		8010	9539	4629	4723	6326	6326					-0.023178714537948508
GMAEIVAAEA	10	Unmodified						0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	961.465909	960.458632	1.0485	0.0010081	0.35026	0.00033676	1.3988	0.0013449	961.4669154217823	30.922	0.1689	30.922	30.873	31.042	0	303	85	1.4393384	0.049865842	1.4393384	292.39484		10.130005	0.0030598	0.00061512	0.00075972	NaN	16.584	369	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96615	+		8011	9539	4629	4723							-0.023178714537948508
GMAGGMAG	8	Unmodified	_GMAGGMAG_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q2230L|1|0.5|ENSG00000005339|chr16:3728358-3728358|T/A|missense_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.2588928353001	1	651.258893	650.251616	1.2153	0.00079146	5.2628	0.0034275	6.4781	0.0042189	651.2622598970361	28.918	0.38613	28.909	28.716	29.102	-0.0083504	684	394	1.2116731	0.23756456	1.2101537	247.79979	0	48.58441						1739	17	2	NaN	NaN	NaN	0.84876	1	1962	1962		0.39566	0	1	220170			8012	323	4630	4724	6327	6327					-0.0874993748294628
GMCEPCDR	8	Unmodified	_GMCEPCDR_					0	0	0			REV__ENST00000380913.7_1_X:9754496-9754571:+|nuORF	REV__ENST00000380913.7_1_X:9754496-9754571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.66442295659994	2	455.664423	909.314293	0.89722	0.00040883	-9.2978	-0.0042367	-8.4006	-0.0038278	455.6600481553467	27.18	0.072405	27.17	27.17	27.242	-0.010124	1401	82	0.77473325	0.049960196	0.7732138	315.01193	0	20.314178						174	4	2	NaN	NaN	NaN	0.82627	1	6096	6096		8.2903	4.7171	1	13703	+		8013	11968	4631	4725	6328	6328					-0.14399159477090961
GMFKFHII	8	Unmodified	_GMFKFHII_					0	0	0		nc|ENSG00000164308|Q6P179-4|ERAP2	nc|ENSG00000164308|Q6P179-4|ERAP2	nc|ENSG00000164308|Q6P179-4|ERAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.7729483113	2	496.772948	991.531344	1.4979	0.00074413	-3.082	-0.0015311	-1.5841	-0.00078693	496.77154961712375	20.333	0.14424	20.333	20.285	20.429	0	1482	70	0.72465914	0.042715907	0.72465914	294.28763	0	17.347168						147	7	2	NaN	NaN	NaN	0.62311	1	8278	8278		23.85	6.0515	1	18525			8014	7971	4632	4726	6329	6329					0.03523927130299853
GMGGLGSL	8	Unmodified	_GMGGLGSL_					0	0	0		nc|ENSG00000136352|P43699|NKX2-1;ENSG00000136352|ENST00000354822|NKX2-1	nc|ENSG00000136352|P43699|NKX2-1	nc|ENSG00000136352|P43699|NKX2-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3443370242	1	691.344337	690.337061	0.99608	0.00068864	6.5998	0.0045627	7.5959	0.0052513	691.3488155211365	31.211	0.24131	31.211	31.115	31.356	0	717	100	1.1918083	0.059670806	1.1918083	243.44565	0	12.188705						316	11	2	NaN	NaN	NaN	0.84727	1	3042	3042		1.2418	0	1	63647			8015	3013	4633	4727	6330	6330					-0.020494490256623976
GMGVPGGP	8	Unmodified	_GMGVPGGP_					0	0	0			REV__ENST00000466404.5_1_19:54631491-54634750:+|nuORF	REV__ENST00000466404.5_1_19:54631491-54634750:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.4611	0.00049118	6.6412	0.0022325	8.1023	0.0027237	336.1649428975713	42.504	0.071903	42.514	42.514	42.586	0.0097351	1527	40	0.69677675	0.024183095	0.6952573	284.812	0	9.88501						46	4	2	NaN	NaN	NaN	0.84876	1	2523	2523		0.39566	0	1	4130.7	+		8016	12303	4634	4728	6331	6331					-0.03749718197116181
GMHLHGGQ	8	Unmodified	_GMHLHGGQ_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.3831821465002	1	836.383182	835.375906	0.94252	0.00078831	4.6306	0.003873	5.5732	0.0046613	836.3864091725019	39.694	0.072296	39.694	39.694	39.767	0	603	40	1.2603331	0.023396254	1.2603331	256.57217	0	4.7628937						66	4	2	NaN	NaN	NaN	0.84876	1	5202	5202		0.39566	0	1	6040.9			8017	7027	4635	4729	6332	6332					-0.04836723671257914
GMKGGGGG	8	Unmodified	_GMKGGGGG_					0	0	0			REV__ENSG00000020633|ENST00000308873|RUNX3	REV__ENSG00000020633|ENST00000308873|RUNX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.2820711184	1	620.282071	619.274795	1.4284	0.00088604	-9.5543	-0.0059263	-8.1258	-0.0050403	620.2762163481892	23.682	0.048214	23.682	23.634	23.682	0	1170	64	0.91673553	0.038552344	0.91673553	187.67499	0	7.8924866						73	3	2	NaN	NaN	NaN	0.84876	1	1138	1138		0.39566	0	1	9614.5	+		8018	8426	4636	4730	6333	6333					-0.050071753739757696
GNANATAFFR	10	Unmodified	_GNANATAFFR_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.76469746775	2	534.764697	1067.51484	2.2179	0.0011861	-4.3968	-0.0023512	-2.1788	-0.0011652	535.2646760739991	25.346	0.12062	25.346	25.298	25.419	0	1248	76	0.8689189	0.046069622	0.8689189	352.52832	0	18.690857						238	6	3	NaN	NaN	NaN	0.65442	1	11437	11437		11.17	4.3071	1	44293			8019	3661;7418	4637	4731	6334	6334					-0.016214825021052093
GNDNQRYNFVL	11	Unmodified	_GNDNQRYNFVL_					0	0	0		MMRN1|p.V790G|1|0.12|ENSG00000138722|chr4:89936049-89936049|T/G|missense_variant	MMRN1|p.V790G|1|0.12|ENSG00000138722|chr4:89936049-89936049|T/G|missense_variant	MMRN1|p.V790G|1|0.12|ENSG00000138722|chr4:89936049-89936049|T/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.32310780365	2	670.323108	1338.63166	0.81559	0.00054671	-6.5038	-0.0043597	-5.6882	-0.0038129	670.3188779597947	33.48	0.048271	33.48	33.456	33.504	0	1047	55	0.99186665	0.032918632	0.99186665	401.36945	0	13.320862						63	3	2	NaN	NaN	NaN	0.7072	1	19387	19387		6.9844	2.2553	1	4680.7			8020	7883	4638	4732	6335	6335					-0.024107890730192594
GNEHKEEKLF	10	Unmodified	_GNEHKEEKLF_					0	0	0			REV__CCSER2|p.S435F|1|0.44|ENSG00000107771|chr10:84372356-84372356|C/T|missense_variant	REV__CCSER2|p.S435F|1|0.44|ENSG00000107771|chr10:84372356-84372356|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.8093019366501	2	615.809302	1229.60405	1.1557	0.00071167	0.010956	6.7469E-06	1.1666	0.00071842	615.8091250666606	27.253	0.24132	27.242	27.194	27.436	-0.010126	1140	88	0.93509084	0.053210318	0.9335714	378.73715	0	21.551605						720	11	6	NaN	NaN	NaN	0.13684	1	16540	16540		40.957	10.921	1	399690	+		8021	8187	4639	4733	6336	6336					-0.0015669233323478693
GNGAGGRG	8	Unmodified	_GNGAGGRG_					0	0	0		ENST00000370033.8_1_10:103799873-103815904:-|nuORF	ENST00000370033.8_1_10:103799873-103815904:-|nuORF	ENST00000370033.8_1_10:103799873-103815904:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.3063120340001	1	645.306312	644.299036	1.8254	0.0011779	3.1578	0.0020377	4.9832	0.0032157	645.307863070492	34.421	0.072376	34.421	34.396	34.469	0	738	40	1.179155	0.023504138	1.179155	241.19537	0	4.80777						77	4	2	NaN	NaN	NaN	0.84887	1	1875	1875		0.32989	0	1	5919.3			8022	6645	4640	4734	6337	6337					-0.03734198896086127
GNGPGGPG	8	Unmodified	_GNGPGGPG_					0	0	0			REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	306.64044569435	2	306.640446	611.266338	1.086	0.00033301	2.4446	0.00074961	3.5306	0.0010826	306.6418478759487	39.694	0.217	39.694	39.694	39.911	0	1542	163	0.6874725	0.100447774	0.6874725	281.54944	0	41.137665						642	10	2	NaN	NaN	NaN	0.84876	1	858	858		0.39566	0	1	81546	+		8023	10061	4641	4735	6338	6338					-0.054844060189566335
GNHGATNQG	9	Unmodified	_GNHGATNQG_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.3703688538002	1	855.370369	854.363092	0.95305	0.00081521	-3.2165	-0.0027513	-2.2635	-0.0019361	855.3677563502388	28.001	0.16895	27.992	27.968	28.137	-0.0089798	447	52	1.3536539	0.030425906	1.3521345	275.47086	0	6.1917114						144	8	2	NaN	NaN	NaN	0.47587	1	5311	5311		10.605	0.5534	1	13495			8024	1175	4642	4736	6339	6339					-0.06991463529800512
GNHGATNQG	9	Unmodified						0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	855.370369	854.363092	1.923	0.0016449	-4.0551	-0.0034686	-2.1321	-0.0018238	855.3670147914328	28.001	0.16888	28.001	27.977	28.146	0	450	55	1.3518641	0.032217383	1.3518641	275.10663		6.556305	0.0048685	-0.00037482	-0.00013516	NaN	10.605	168	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12591			8025	1175	4642	4736							-0.06991463529800512
GNHVQLRG	8	Unmodified	_GNHVQLRG_					0	0	0		nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7-4|TRERF1	nc|ENSG00000124496|Q96PN7-4|TRERF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.7410254062001	2	440.741025	879.467498	0.80312	0.00035397	-7.4167	-0.0032688	-6.6136	-0.0029149	440.7377619279065	40.945	0.072109	40.945	40.945	41.017	0	1434	31	0.75435036	0.018538952	0.75435036	306.87894	0	7.5418396						34	4	2	NaN	NaN	NaN	0.8439	1	5791	5791		3.1533	1.483	1	2038.4			8026	2418	4643	4737	6340	6340					0.02294283017579346
GNHVQLRG	8	Unmodified						0	0	0		nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7-4|TRERF1	nc|ENSG00000124496|Q96PN7-4|TRERF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	440.741025	879.467498	2.2372	0.00098602	-8.0408	-0.0035439	-5.8036	-0.0025579	440.7380496686641	40.703	0.047966	40.709	40.709	40.757	0.0067558	1431	25	0.75620437	0.014831126	0.7546849	307.63315		6.033478	-0.11762	-0.00026853	0.00016728	NaN	3.1533	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1615.2			8027	2418	4643	4737							0.02294283017579346
GNKGGACG	8	Unmodified	_GNKGGACG_					0	0	0		ENST00000286713.6_1_9:124110368-124110401:-|nuORF	ENST00000286713.6_1_9:124110368-124110401:-|nuORF	ENST00000286713.6_1_9:124110368-124110401:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.2878847778001	1	663.287885	662.280608	0.74943	0.00049709	-2.751	-0.0018247	-2.0015	-0.0013276	663.2869593679422	35.265	0.096504	35.265	35.265	35.361	0	1107	58	0.9552588	0.034813106	0.9552588	195.28735	0	7.116974						83	5	2	NaN	NaN	NaN	0.84887	1	2367	2367		0.32989	0.32989	1	4501.7			8028	6373	4644	4738	6341	6341					-0.06404076862315833
GNLRDGDSVPQ	11	Unmodified	_GNLRDGDSVPQ_					0	0	0		ENST00000518694.1_1_X:148793775-148794923:+|nuORF	ENST00000518694.1_1_X:148793775-148794923:+|nuORF	ENST00000518694.1_1_X:148793775-148794923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2809086379501	2	579.280909	1156.54726	1.4127	0.00081832	-6.7025	-0.0038826	-5.2898	-0.0030643	579.2766605460607	22.79	0.14453	22.776	22.752	22.896	-0.01354	1215	70	0.8891654	0.042315364	0.88764596	360.38855	0	17.150879						210	7	3	NaN	NaN	NaN	0.58731	1	14533	14533		14.854	0.8124	1	24727			8029	7385	4645	4739	6342	6342					-0.024747398897488893
GNNDCDSD	8	Unmodified	_GNNDCDSD_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.12723911059993	2	420.127239	838.239925	0.54743	0.00022999	7.3246	0.0030773	7.872	0.0033073	420.13014889258574	35.241	0.096527	35.241	35.192	35.289	0	1479	55	0.72651637	0.03342074	0.72651637	295.7789	0	13.606262						97	5	2	NaN	NaN	NaN	0.84692	1	5234	5234		1.4396	1.1097	1	6446.2			8030	2289	4646	4740	6343	6343					-0.18566507763262052
GNPGGRGG	8	Unmodified	_GNPGGRGG_					0	0	0		ENST00000354410.9_2_15:100106036-100138700:+|nuORF	ENST00000354410.9_2_15:100106036-100138700:+|nuORF	ENST00000354410.9_2_15:100106036-100138700:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3219620982002	1	671.321962	670.314686	0.97402	0.00065388	6.6926	0.0044929	7.6666	0.0051468	671.3258986329535	29.111	0.16895	29.103	29.031	29.2	-0.0077209	756	58	1.1683017	0.034374356	1.1667823	238.78258	0	7.0255737						191	8	2	NaN	NaN	NaN	0.84887	1	2527	2527		0.32989	0	1	23715			8031	6565	4647	4741	6344	6344					-0.033659123790357626
GNPGGRGG	8	Unmodified						0	0	0		ENST00000354410.9_2_15:100106036-100138700:+|nuORF	ENST00000354410.9_2_15:100106036-100138700:+|nuORF	ENST00000354410.9_2_15:100106036-100138700:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	671.321962	670.314686	1.2744	0.00085554	7.4794	0.0050211	8.7538	0.0058766	671.3255039651692	29.087	0.19304	29.087	29.039	29.232	0	753	88	1.1701111	0.052482963	1.1701111	239.15239		10.7267	-0.0078101	0.00025127	0.0016644	NaN	0.32989	251	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25065			8032	6565	4647	4741							-0.033659123790357626
GNPSREVVYIV	11	Unmodified	_GNPSREVVYIV_					0	0	0			REV__ENST00000514313.1_1_4:77053589-77055413:-|nuORF	REV__ENST00000514313.1_1_4:77053589-77055413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8353197219001	2	616.83532	1231.65609	0.93119	0.00057439	-6.2769	-0.0038718	-5.3457	-0.0032974	616.8319905475101	36.589	0.12051	36.591	36.543	36.663	0.0016747	1122	55	0.9460945	0.033003926	0.9445751	383.18686	0	13.367249						168	6	3	NaN	NaN	NaN	0.66757	1	16595	16595		9.6116	1.3668	1	13227	+		8033	9742	4648	4742	6345	6345					0.04952471080514442
GNQGGGGS	8	Unmodified	_GNQGGGGS_					0	0	0			REV__nc|ENSG00000151079|P17658|KCNA6	REV__nc|ENSG00000151079|P17658|KCNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.2586931394001	1	633.258693	632.251417	1.7801	0.0011273	-6.2896	-0.003983	-4.5095	-0.0028557	633.2541691827845	55.34	0.095982	55.34	55.316	55.412	0	732	52	1.1827712	0.030742764	1.1827712	242.03084	0	6.290909						73	5	2	NaN	NaN	NaN	0.84727	1	1514	1514		1.2418	0	1	4939.7	+		8034	13142	4649	4743	6346	6346					-0.07941897886939842
GNSGGKAR	8	Unmodified	_GNSGGKAR_					0	0	0		ENST00000305123.5_1_2:227663009-227664002:-|nuORF	ENST00000305123.5_1_2:227663009-227664002:-|nuORF	ENST00000305123.5_1_2:227663009-227664002:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	746.3903760144001	1	746.390376	745.3831	0.5605	0.00041835	-3.8882	-0.0029021	-3.3277	-0.0024838	746.3879392475963	35.168	0.14481	35.168	35.096	35.241	0	543	79	1.296287	0.046710253	1.296287	264.4066	0	9.527588						201	7	2	NaN	NaN	NaN	0.80692	1	3983	3983		8.2903	2.8244	1	15078			8035	6422	4650	4744	6347	6347					0.0002233220080825049
GNSSSTLL	8	Unmodified	_GNSSSTLL_					0	0	0			REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.3941239883003	1	778.394124	777.386848	1.3587	0.0010576	6.035	0.0046976	7.3936	0.0057552	778.3988216330237	27.808	0.21724	27.798	27.774	27.991	-0.009552	522	91	1.3088527	0.053861856	1.3073332	266.771	0	10.978149						369	10	3	NaN	NaN	NaN	0.72013	1	4382	4382		17.799	1.3823	1	64818	+		8036	11355	4651	4745	6348	6348					-0.010750428159667536
GNSSSTLL	8	Unmodified						0	0	0			REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	778.394124	777.386848	1.3587	0.0010576	6.035	0.0046976	7.3936	0.0057552	778.3988216330237	27.808	0.21724	27.798	27.774	27.991	-0.009552	522	91	1.3088527	0.053861856	1.3073332	266.771		10.978149	-0.005189	0.00037658	0.00013755	NaN	17.799	369	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64818	+		8037	11355	4651	4745							-0.010750428159667536
GNTPLHLAMSK	11	Unmodified	_GNTPLHLAMSK_					0	0	0		nc|ENSG00000184381|O60733-4|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8107903806	2	584.81079	1167.60703	1.6467	0.00096304	4.1265	0.0024132	5.7732	0.0033762	584.81265171778	20.501	0.16841	20.501	20.477	20.646	0	1173	70	0.91489893	0.042255938	0.91489893	370.7772	0	17.124908						210	8	4	NaN	NaN	NaN	0.50669	1	15406	15406		18.233	0	1	25336			8038	5349	4652	4746	6349	6349					0.02992859519895319
GNTRVEGEGDF	11	Unmodified	_GNTRVEGEGDF_					0	0	0		ENST00000234875.8_1_1:6246387-6246558:-|nuORF	ENST00000234875.8_1_1:6246387-6246558:-|nuORF	ENST00000234875.8_1_1:6246387-6246558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.7650913982501	2	590.765091	1179.51563	1.3645	0.00080611	-2.363	-0.001396	-0.99845	-0.00058985	590.7628743932385	16.85	0.16776	16.837	16.765	16.933	-0.013294	1227	94	0.88180584	0.057002902	0.8802864	357.32358	0	23.098602						262	8	3	NaN	NaN	NaN	0.67772	1	15220	15220		8.9191	3.2249	1	21759			8039	6255	4653	4747	6350	6350					-0.06694732643700263
GNVYTSSC	8	Unmodified	_GNVYTSSC_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.3348945499001	1	830.334895	829.327618	2.2772	0.0018909	3.8177	0.00317	6.0949	0.0050608	830.3380032930949	23.224	0.048225	23.224	23.2	23.248	0	507	46	1.3178225	0.02690363	1.3178225	268.30725	0	5.477539						49	3	2	NaN	NaN	NaN	0.80071	1	5126	5126		9.1232	2.26	1	4655	+		8040	11381	4654	4748	6351	6351					-0.09387262101824945
GPAAASHA	8	Unmodified	_GPAAASHA_					0	0	0		ENST00000265827.7_1_7:127031641-127032559:-|nuORF	ENST00000265827.7_1_7:127031641-127032559:-|nuORF	ENST00000265827.7_1_7:127031641-127032559:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.331464152	1	681.331464	680.324188	1.4327	0.00097613	-7.225	-0.0049226	-5.7923	-0.0039465	681.3266107736795	26.48	0.096506	26.47	26.446	26.542	-0.010645	624	103	1.247731	0.061304927	1.2462115	254.94171	0	12.526093						135	5	2	NaN	NaN	NaN	0.82797	1	2763	2763		5.4659	0	1	11155			8041	6331	4655	4749	6352	6352					-0.028761440935340943
GPAAGGLH	8	Unmodified	_GPAAGGLH_					0	0	0			REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3521995941	1	679.3522	678.344923	0.9203	0.00062521	-5.4702	-0.0037162	-4.5499	-0.003091	679.3488668076691	30.438	0.14479	30.432	30.408	30.553	-0.0057545	1254	40	0.8652351	0.023948371	0.86371565	176.79869	0	4.893524						119	7	3	NaN	NaN	NaN	0.84876	1	2718	2718		0.39566	0	1	14863	+		8042	12782	4656	4750	6353	6353					-0.007115537138702166
GPAAGGLH	8	Unmodified						0	0	0			REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	679.3522	678.344923	1.3044	0.00088618	-5.7191	-0.0038852	-4.4146	-0.0029991	679.3487618728816	30.463	0.14479	30.463	30.415	30.56	0	1251	40	0.8670771	0.023945808	0.8670771	177.17506		4.89299	0.015449	-7.7374E-05	0.0016807	NaN	0.39566	99	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11363	+		8043	12782	4656	4750							-0.007115537138702166
GPAAGGLH	8	Unmodified						0	0	0			REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	REV__ENST00000560778.2_2_15:80494007-80494217:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.3522	678.344923	0.9203	0.00062521	-5.4702	-0.0037162	-4.5499	-0.003091	679.3488668076691	30.438	0.14479	30.432	30.408	30.553	-0.0057545	1254	40	0.8652351	0.023948371	0.86371565	176.79869		4.893524	-0.015449	9.1703E-05	-0.0016807	NaN	0.39566	119	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14863	+		8044	12782	4656	4750							-0.007115537138702166
GPAAGPKN	8	Unmodified	_GPAAGPKN_					0	0	0		ENST00000447595.1_1_1:179054682-179054961:+|nuORF	ENST00000447595.1_1_1:179054682-179054961:+|nuORF	ENST00000447595.1_1_1:179054682-179054961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3784143446	1	711.378414	710.371138	0.96768	0.00068839	-6.3682	-0.0045302	-5.4005	-0.0038418	711.3738716604611	32.49	0.072399	32.49	32.466	32.539	0	630	37	1.2441287	0.021613955	1.2441287	253.99356	0	4.412567						75	4	2	NaN	NaN	NaN	0.84887	1	3429	3429		0.32989	0	1	5768.5			8045	7028	4657	4751	6354	6354					0.004367154576016219
GPAAPLQV	8	Unmodified	_GPAAPLQV_					0	0	0			REV__nc|nan|Q8N9M1|C19orf47	REV__nc|nan|Q8N9M1|C19orf47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.4301155641001	1	752.430116	751.422839	0.91779	0.00069058	5.0025	0.003764	5.9203	0.0044546	752.4334719196883	33.744	0.14485	33.742	33.718	33.863	-0.0018463	519	88	1.310647	0.052063704	1.3091276	267.29678	0	10.618011						270	7	3	NaN	NaN	NaN	0.79379	1	4010	4010		10.052	0	1	34419	+		8046	13263	4658	4752	6355	6355					0.037184591515256216
GPAAPLQV	8	Unmodified						0	0	0			REV__nc|nan|Q8N9M1|C19orf47	REV__nc|nan|Q8N9M1|C19orf47	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	752.430116	751.422839	0.82971	0.0006243	5.4995	0.004138	6.3293	0.0047623	752.4339624657531	33.745	0.14478	33.745	33.697	33.842	0	519	67	1.310647	0.03948605	1.310647	267.29678		8.052887	0.0015701	0.00015231	0.00075972	NaN	10.052	218	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30768	+		8047	13263	4658	4752							0.037184591515256216
GPAAPLQV	8	Unmodified						0	0	0			REV__nc|nan|Q8N9M1|C19orf47	REV__nc|nan|Q8N9M1|C19orf47	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.430116	751.422839	0.91779	0.00069058	5.0025	0.003764	5.9203	0.0044546	752.4334719196883	33.744	0.14485	33.742	33.718	33.863	-0.0018463	519	88	1.310647	0.052063704	1.3091276	267.29678		10.618011	-0.0015701	-0.00022171	-0.00075972	NaN	10.052	270	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34419	+		8048	13263	4658	4752							0.037184591515256216
GPAGFLVP	8	Unmodified	_GPAGFLVP_					0	0	0		ENST00000272117.7_1_1:226821843-226822020:-|nuORF	ENST00000272117.7_1_1:226821843-226822020:-|nuORF	ENST00000272117.7_1_1:226821843-226822020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.4243019047001	1	757.424302	756.417025	1.4976	0.0011343	-0.065157	-4.9351E-05	1.4325	0.001085	757.4240005254384	30.172	0.096523	30.166	30.142	30.238	-0.0064106	552	64	1.2908988	0.03772545	1.2893794	263.23813	0	7.692932						87	5	2	NaN	NaN	NaN	0.81214	1	4099	4099		7.5902	2.1244	1	6271			8049	6340	4659	4753	6356	6356					0.02907360639858325
GPAGGGVP	8	Unmodified	_GPAGGGVP_					0	0	0		ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.3147514553	1	611.314751	610.307475	1.7033	0.0010412	1.9339	0.0011822	3.6372	0.0022235	611.315639389951	17.306	0.095985	17.292	17.22	17.316	-0.013569	1152	43	0.92775106	0.025700212	0.9262317	189.99025	0	5.263031						72	5	2	NaN	NaN	NaN	0.84651	1	766	766		1.6704	0	1	4422.2			8050	5176	4660	4754	6357	6357					-0.013266449794855362
GPAPPREEVGF	11	Unmodified	_GPAPPREEVGF_					0	0	0		ENST00000577917.5_1_19:5681066-5684844:+|nuORF	ENST00000577917.5_1_19:5681066-5684844:+|nuORF	ENST00000577917.5_1_19:5681066-5684844:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2932877317	2	578.293288	1154.57202	2.2905	0.0013246	-2.3129	-0.0013376	-0.022433	-1.2973E-05	578.292191163389	18.724	0.071928	18.724	18.7	18.772	0	1248	37	0.8689189	0.02210027	0.8689189	352.1895	0	8.957642						75	4	2	NaN	NaN	NaN	0.72342	1	14965	14965		5.9198	1.5067	1	5116.5			8051	7669	4661	4755	6358	6358					0.0009193998362206912
GPASIECL	8	Unmodified	_GPASIECL_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.381116461	1	789.381116	788.37384	1.4108	0.0011137	0.81512	0.00064344	2.226	0.0017571	789.3816911182774	32.828	0.21718	32.828	32.78	32.997	0	516	88	1.3124412	0.05202484	1.3124412	267.43774	0	10.601166						235	10	3	NaN	NaN	NaN	0.76633	1	4604	4604		13.737	3.1321	1	25399			8052	232	4662	4756	6359	6359					-0.02881197199747021
GPASIECL	8	Unmodified	_GPASIECL_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.381116461	1	789.381116	788.37384	1.2483	0.00098538	0.82487	0.00065113	2.0732	0.0016365	789.3816364647892	32.851	0.14474	32.848	32.8	32.945	-0.0031052	510	58	1.316029	0.03408158	1.3145095	268.16882	0	6.944824						215	7	3	NaN	NaN	NaN	0.72043	1	4512	4512		17.78	7.7288	1	24776			8053	232	4662	4756	6360	6360					-0.02881197199747021
GPASSVLC	8	Unmodified	_GPASSVLC_					0	0	0			REV__ENST00000428809.5_1_21:15399744-15399855:+|nuORF	REV__ENST00000428809.5_1_21:15399744-15399855:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3549017105001	1	733.354902	732.347625	1.155	0.00084703	1.8969	0.0013911	3.0519	0.0022381	733.3559621857478	29.714	0.21712	29.707	29.659	29.876	-0.0070648	621	73	1.2495319	0.043218493	1.2480124	254.95174	0	8.818222						277	10	3	NaN	NaN	NaN	0.82332	1	3710	3710		6.0903	0	1	36676	+		8054	12141	4663	4757	6361	6361					-0.029254663712094953
GPAYYPKS	8	Unmodified	_GPAYYPKS_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.4355948725	1	882.435595	881.428318	0.41041	0.00036216	-2.472	-0.0021814	-2.0616	-0.0018193	882.4333464662211	55.386	0.047966	55.386	55.386	55.434	-0.00061798	441	37	1.3572328	0.021471381	1.3557134	276.06482	0	4.36734						42	3	2	NaN	NaN	NaN	0.84651	1	5697	5697		1.6704	0.42852	1	3169.5	+		8055	9537	4664	4758	6362	6362					-0.017138620566697682
GPCACPDC	8	Unmodified	_GPCACPDC_					0	0	0		ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.2364428336999	1	765.236443	764.229166	1.7446	0.0013351	-5.9842	-0.0045793	-4.2396	-0.0032443	765.231313081402	24.26	0.09655	24.248	24.224	24.32	-0.012749	1071	61	0.977233	0.036596	0.97571355	199.23962	0	7.4612427						97	5	2	NaN	NaN	NaN	0.84887	1	4195	4195		0.32989	0	1	7916.3			8056	5227	4665	4759	6363	6363					-0.16237904942897785
GPCVPHPH	8	Unmodified	_GPCVPHPH_					0	0	0		nc|ENSG00000139445|Q96NZ1-2|FOXN4;FOXN4|p.F428Lfs*11|1|0.11|ENSG00000139445|chr12:109281417-109281417|G/-|frameshift_variant;ENSG00000139445|ENST00000299162|FOXN4	nc|ENSG00000139445|Q96NZ1-2|FOXN4	nc|ENSG00000139445|Q96NZ1-2|FOXN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.20014750895	2	422.200148	842.385742	1.1704	0.00049413	-6.9914	-0.0029518	-5.821	-0.0024576	422.1965351806034	30.753	0.024124	30.753	30.753	30.777	0	1377	34	0.7895419	0.020354152	0.7895419	321.4124	0	8.285919						33	2	2	NaN	NaN	NaN	0.84651	1	5292	5292		1.6704	0	1	2696.1			8057	3218	4666	4760	6364	6364					-0.04175535665888219
GPDGGEEVSM	10	Unmodified	_GPDGGEEVSM_					0	0	0		nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.3880523324001	1	977.388052	976.380776	2.1841	0.0021347	-1.5512	-0.0015161	0.6329	0.00061859	977.3864578467478	17.693	0.19177	17.693	17.645	17.837	0	360	49	1.405474	0.028549314	1.405474	285.4496	0	5.7983093						134	9	2	NaN	NaN	NaN	0.14619	1	7782	7782		40.154	16.303	1	11685			8058	2495	4667	4761	6365	6365					-0.10835929109816789
GPDGGEEVSM	10	Unmodified	_GPDGGEEVSM_					0	0	0		nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.3880523324001	1	977.388052	976.380776	2.1662	0.0021172	-0.22359	-0.00021854	1.9426	0.0018987	977.3885773637942	17.714	0.19175	17.7	17.628	17.82	-0.013784	360	46	1.405474	0.026763558	1.4039545	285.4496	0	5.4356384						174	9	3	NaN	NaN	NaN	0.033293	1	7625	7625		58.2	20.069	1	12540			8059	2495	4667	4761	6366	6366					-0.10835929109816789
GPDGHLLRQ	9	Unmodified	_GPDGHLLRQ_					0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.76724015670004	2	496.76724	991.519927	1.6846	0.00083686	-3.975	-0.0019747	-2.2904	-0.0011378	496.76569968344756	11.956	0.11997	11.956	11.932	12.052	0	1323	46	0.8228144	0.027692616	0.8228144	334.14902	0	11.246094						97	6	2	NaN	NaN	NaN	0.10956	1	8271	8271		34.439	5.7723	1	8498.1	+		8060	8802	4668	4762	6367	6367					0.02382821360527032
GPDGHLLRQ	9	Unmodified	_GPDGHLLRQ_					0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	331.5139189266667	3	331.513919	991.519927	2.0527	0.00068048	-2.9812	-0.0009883	-0.92853	-0.00030782	331.51267912606005	11.98	0.33618	11.98	11.884	12.22	0	1440	55	0.7506418	0.033380866	0.7506418	457.2527	0	20.333923						458	15	4	NaN	NaN	NaN	0.27442	1	8272	8272		13.463	0	1	146300	+		8061	8802	4668	4762	6368	6368					0.02382821360527032
GPDGHLLRQ	9	Unmodified	_GPDGHLLRQ_					0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	331.5139189266667	3	331.513919	991.519927	1.7885	0.00059293	-1.7155	-0.00056871	0.073061	2.4221E-05	331.5132696356265	12.006	0.31195	11.998	11.854	12.166	-0.0081863	1437	52	0.7524962	0.03152466	0.75097674	458.38226	0	19.203247						471	14	4	NaN	NaN	NaN	0.20577	1	8110	8110		16.858	0.27415	1	145130	+		8062	8802	4668	4762	6369	6369					0.02382821360527032
GPDGHLLRQ	9	Unmodified						0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.76724	991.519927	1.6846	0.00083686	-3.975	-0.0019747	-2.2904	-0.0011378	496.76569968344756	11.956	0.11997	11.956	11.932	12.052	0	1323	46	0.8228144	0.027692616	0.8228144	334.14902		11.246094	-0.020871	-0.00061233	-0.00016357	NaN	34.439	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8498.1	+		8063	8802	4668	4762							0.02382821360527032
GPDGHLLRQ	9	Unmodified						0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	331.513919	991.519927	2.0527	0.00068048	-2.9812	-0.0009883	-0.92853	-0.00030782	331.51267912606005	11.98	0.33618	11.98	11.884	12.22	0	1440	55	0.7506418	0.033380866	0.7506418	457.2527		20.333923	-0.0088749	-0.00061587	-0.00016748	NaN	16.858	458	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146300	+		8064	8802	4668	4762							0.02382821360527032
GPDGHLLRQ	9	Unmodified						0	0	0			REV__nc|ENSG00000100311|P01127-2|PDGFB	REV__nc|ENSG00000100311|P01127-2|PDGFB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	331.513919	991.519927	1.7885	0.00059293	-1.7155	-0.00056871	0.073061	2.4221E-05	331.5132696356265	12.006	0.31195	11.998	11.854	12.166	-0.0081863	1437	52	0.7524962	0.03152466	0.75097674	458.38226		19.203247	0.0088749	0.00064291	0.00016748	NaN	16.858	471	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145130	+		8065	8802	4668	4762							0.02382821360527032
GPDGPFPE	8	Unmodified	_GPDGPFPE_					0	0	0			REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.3570102005	1	815.35701	814.349734	1.3789	0.0011243	5.2358	0.0042691	6.6148	0.0053934	815.3621553075786	31.742	0.09654	31.742	31.718	31.815	0	540	64	1.2980826	0.037693262	1.2980826	264.36743	0	7.676605						101	5	2	NaN	NaN	NaN	0.76633	1	4942	4942		13.737	0	1	8830.2	+		8066	11665	4669	4763	6370	6370					-0.06486714361767554
GPDGPFPE	8	Unmodified						0	0	0			REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.35701	814.349734	1.3789	0.0011243	5.2358	0.0042691	6.6148	0.0053934	815.3621553075786	31.742	0.09654	31.742	31.718	31.815	0	540	64	1.2980826	0.037693262	1.2980826	264.36743		7.676605	0.0027523	-0.00017791	-0.0010357	NaN	13.737	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8830.2	+		8067	11665	4669	4763							-0.06486714361767554
GPDGPFPE	8	Unmodified						0	0	0			REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	REV__ENST00000303277.6_1_4:1718443-1718770:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	815.35701	814.349734	0.90033	0.00073409	5.5627	0.0045356	6.4631	0.0052697	815.3618097197769	31.741	0.14486	31.737	31.712	31.857	-0.0044155	534	58	1.3016734	0.034099817	1.300154	265.09872		6.9447327	-0.0027523	8.866E-05	0.0010357	NaN	13.737	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10470	+		8068	11665	4669	4763							-0.06486714361767554
GPDICPPE	8	Unmodified	_GPDICPPE_					0	0	0		ENST00000481495.1_1_1:111963982-111965634:-|nuORF	ENST00000481495.1_1_1:111963982-111965634:-|nuORF	ENST00000481495.1_1_1:111963982-111965634:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.18382874274994	2	414.183829	826.353105	1.751	0.00072524	-2.311	-0.00095716	-0.55996	-0.00023193	414.18336187478707	30.101	0.21725	30.101	30.053	30.27	0	1410	70	0.76917666	0.042609513	0.76917666	313.21927	0	17.351135						232	10	4	NaN	NaN	NaN	0.83211	1	5099	5099		4.9097	2.1245	1	25423			8069	7203	4670	4764	6371	6371					-0.06701787579413576
GPDKGGHG	8	Unmodified	_GPDKGGHG_					0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3372778114001	1	724.337278	723.330001	1.1028	0.00079879	4.0638	0.0029435	5.1666	0.0037423	724.340157652895	20.742	0.12053	20.742	20.694	20.814	0	1506	61	0.70979416	0.037178516	0.70979416	144.85802	0	7.58757						177	6	3	NaN	NaN	NaN	0.84756	1	3660	3660		1.072	0.67635	1	20794	+		8070	13452	4671	4765	6372	6372					-0.0427304558185142
GPDKGGHG	8	Unmodified	_GPDKGGHG_					0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3372778114001	1	724.337278	723.330001	1.0958	0.00079372	6.6701	0.0048314	7.7659	0.0056251	724.3437599587755	20.718	0.14462	20.718	20.67	20.814	0	624	67	1.247731	0.03963399	1.247731	254.64258	0	8.088684						123	7	2	NaN	NaN	NaN	0.8439	1	3661	3661		3.1533	1.9115	1	7906.6	+		8071	13452	4671	4765	6373	6373					-0.0427304558185142
GPDKGGHG	8	Unmodified						0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.337278	723.330001	1.1028	0.00079879	4.0638	0.0029435	5.1666	0.0037423	724.340157652895	20.742	0.12053	20.742	20.694	20.814	0	1506	61	0.70979416	0.037178516	0.70979416	144.85802		7.58757	-0.0051627	-0.00044645	0.0016892	NaN	1.072	177	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20794	+		8072	13452	4671	4765							-0.0427304558185142
GPDKGGHG	8	Unmodified						0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.337278	723.330001	1.0958	0.00079372	6.6701	0.0048314	7.7659	0.0056251	724.3437599587755	20.718	0.14462	20.718	20.67	20.814	0	624	67	1.247731	0.03963399	1.247731	254.64258		8.088684	-0.005183	0.00016095	-0.00014072	NaN	3.1533	123	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7906.6	+		8073	13452	4671	4765							-0.0427304558185142
GPDKGGHG	8	Unmodified						0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	724.337278	723.330001	0.95175	0.00068939	5.0811	0.0036804	6.0329	0.0043698	724.3411402469652	20.766	0.14443	20.752	20.704	20.849	-0.014086	1509	64	0.70793515	0.03903961	0.7064157	144.4786		7.9673767	0.0051627	0.00029045	-0.0016892	NaN	1.072	166	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21568	+		8074	13452	4671	4765							-0.0427304558185142
GPDKGGHG	8	Unmodified						0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	724.337278	723.330001	1.4151	0.001025	6.2156	0.0045022	7.6306	0.0055271	724.3424251261669	20.742	0.072304	20.728	20.704	20.776	-0.014088	621	55	1.2495319	0.032420874	1.2480124	255.0101		6.6166077	0.005183	-0.00016832	0.00014072	NaN	3.1533	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4697	+		8075	13452	4671	4765							-0.0427304558185142
GPDNVHVAL	9	Unmodified	_GPDNVHVAL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.24306656865	2	461.243067	920.47158	1.3991	0.00064532	-1.2513	-0.00057716	0.14779	6.8166E-05	461.24244830734193	18.868	0.095991	18.868	18.82	18.916	0	1374	40	0.791392	0.0240497	0.791392	321.72745	0	9.777008						138	5	4	NaN	NaN	NaN	0.2345	1	6418	6418		23.118	9.3805	1	18739			8076	3046	4672	4766	6374	6374					0.00816327720622212
GPDPAELLL	9	Unmodified	_GPDPAELLL_					0	0	0		nc|ENSG00000272391|A8CG34|POM121C;ENSG00000196313|ENST00000434423|POM121	nc|ENSG00000272391|A8CG34|POM121C	nc|ENSG00000272391|A8CG34|POM121C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5036744377002	1	924.503674	923.496398	1.2131	0.0011215	-0.18653	-0.00017244	1.0266	0.00094907	924.5034768547823	30.825	0.12065	30.825	30.777	30.897	0	318	58	1.4304334	0.033846498	1.4304334	290.75024	0	6.8796387						144	6	2	NaN	NaN	NaN	0.10956	1	6474	6474		34.439	15.32	1	13720			8077	5613	4673	4767	6375	6375					0.03158962803343002
GPDPAELLL	9	Unmodified	_GPDPAELLL_					0	0	0		nc|ENSG00000272391|A8CG34|POM121C;ENSG00000196313|ENST00000434423|POM121	nc|ENSG00000272391|A8CG34|POM121C	nc|ENSG00000272391|A8CG34|POM121C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5036744377002	1	924.503674	923.496398	0.83424	0.00077126	0.15331	0.00014173	0.98755	0.00091299	924.5035138905951	30.824	0.19303	30.818	30.746	30.939	-0.0057564	318	58	1.4304334	0.03384292	1.428914	290.75024	0	6.878937						180	9	3	NaN	NaN	NaN	0.056143	1	6349	6349		44.302	22.467	1	14437			8078	5613	4673	4767	6376	6376					0.03158962803343002
GPDPSSPAF	9	Unmodified	_GPDPSSPAF_					0	0	0		ENSG00000137801|ENST00000260356|THBS1;CON__Q28194	ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.3941239883001	1	874.394124	873.386848	1.6707	0.0014609	-0.056883	-4.9738E-05	1.6138	0.0014111	874.3934214923232	19.948	0.16836	19.948	19.876	20.045	0	459	55	1.3464937	0.032231092	1.3464937	273.9192	0	6.556793						148	8	2	NaN	NaN	NaN	0.074859	1	5707	5707		39.459	16.124	1	9438.4		+	8079	211	4674	4768	6377	6377					-0.054910428159928415
GPDPSSPAF	9	Unmodified	_GPDPSSPAF_					0	0	0		ENSG00000137801|ENST00000260356|THBS1;CON__Q28194	ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.3941239883001	1	874.394124	873.386848	1.5229	0.0013316	0.17182	0.00015024	1.6947	0.0014818	874.3939285939155	19.948	0.096355	19.934	19.909	20.006	-0.014141	459	46	1.3464937	0.026854873	1.3449743	273.9192	0	5.463135						88	5	2	NaN	NaN	NaN	0.18779	1	5571	5571		26.115	10.94	1	5565.6		+	8080	211	4674	4768	6378	6378					-0.054910428159928415
GPDSAGIAL	9	Unmodified	_GPDSAGIAL_					0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1;CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.4148594304	1	800.414859	799.407583	2.0767	0.0016622	-1.1812	-0.00094543	0.89552	0.00071679	800.415055461597	22.669	0.072384	22.655	22.631	22.704	-0.01354	510	46	1.316029	0.026900768	1.3145095	268.1055	0	5.4802856						65	4	2	NaN	NaN	NaN	0.094712	1	4650	4650		36.586	6.9881	1	4199.5			8081	3374	4675	4769	6379	6379					-0.00014452436334977392
GPDSSSSP	8	Unmodified	_GPDSSSSP_					0	0	0		ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	ENSG00000137273|ENST00000645481|FOXF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.2998892521001	1	733.299889	732.292613	1.1687	0.00085698	4.1937	0.0030752	5.3623	0.0039322	733.3025816984582	34.252	0.096558	34.252	34.228	34.324	0	600	46	1.2621325	0.026992798	1.2621325	257.5231	0	5.507553						78	5	2	NaN	NaN	NaN	0.84455	1	3786	3786		2.7852	0	1	5600.5			8082	3080	4676	4770	6380	6380					-0.08424181638122263
GPDYATAE	8	Unmodified	_GPDYATAE_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;LYN-TGS1|1|fusion;LYN-TGS1|2|fusion	ENSG00000137574|ENST00000260129|TGS1;LYN-TGS1|1|fusion	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.1770579556499	2	412.177058	822.339563	1.2464	0.00051374	-4.555	-0.0018775	-3.3086	-0.0013637	412.17515875513607	35.988	0.072388	35.988	35.988	36.061	0	1443	31	0.7487872	0.018546999	0.7487872	304.94067	0	7.553192						57	4	2	NaN	NaN	NaN	0.84455	1	5043	5043		2.7852	0	1	4080.5			8083	3095;7868	4677	4771	6381	6381					-0.07871322087009958
GPELISEERSG	11	Unmodified	_GPELISEERSG_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.290942008	2	587.290942	1172.56733	2.6114	0.0015337	-10.367	-0.0060883	-7.7553	-0.0045546	587.283898271276	16.563	0.047968	16.55	16.55	16.598	-0.012993	1176	25	0.9130621	0.014695346	0.91154265	370.0146	0	5.9552307						39	3	2	NaN	NaN	NaN	0.64656	1	15013	15013		10.965	2.0031	1	2697			8084	2032	4678	4772	6382	6382					-0.012049889498257471
GPGAELMT	8	Unmodified	_GPGAELMT_					0	0	0		ENST00000354377.7_1_15:90895613-90902094:+|nuORF;ENST00000560038.5_1_15:90895628-90902094:+|nuORF	ENST00000354377.7_1_15:90895613-90902094:+|nuORF	ENST00000354377.7_1_15:90895613-90902094:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.3654663968001	1	775.365466	774.35819	1.3607	0.0010551	0.79116	0.00061344	2.1519	0.0016685	775.3658938497116	30.608	0.21721	30.608	30.56	30.777	0	516	52	1.3124412	0.030500531	1.3124412	267.52057	0	6.2170715						221	10	3	NaN	NaN	NaN	0.82332	1	4419	4419		6.0903	0	1	26208			8085	6564	4679	4773	6383	6383					-0.0380148371677933
GPGAELMT	8	Unmodified						0	0	0		ENST00000354377.7_1_15:90895613-90902094:+|nuORF;ENST00000560038.5_1_15:90895628-90902094:+|nuORF	ENST00000354377.7_1_15:90895613-90902094:+|nuORF	ENST00000354377.7_1_15:90895613-90902094:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.365466	774.35819	1.2518	0.00097063	0.11879	9.2103E-05	1.3706	0.0010627	775.3649919129017	30.607	0.21712	30.601	30.553	30.77	-0.0057545	513	49	1.3142352	0.028704882	1.3127158	267.88626		5.8510437	-0.0033951	-0.00028087	0.00013726	NaN	6.0903	198	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24437			8086	6564	4679	4773							-0.0380148371677933
GPGAGGHY	8	Unmodified	_GPGAGGHY_					0	0	0		ENST00000409262.7_1_2:74326608-74327766:+|nuORF	ENST00000409262.7_1_2:74326608-74327766:+|nuORF	ENST00000409262.7_1_2:74326608-74327766:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3158140877999	1	715.315814	714.308538	-0.60461	-0.00043249	-0.1111	-7.9475E-05	-0.71572	-0.00051196	715.3157229867486	54.906	0.11998	54.905	54.881	55.001	-0.00061798	543	79	1.296287	0.046690226	1.2947675	264.61426	0	9.531006						161	6	2	NaN	NaN	NaN	0.84876	1	3429	3429		0.39566	0	1	34361			8087	6857	4680	4774	6384	6384					-0.06004430610585132
GPGASGQA	8	Unmodified	_GPGASGQA_					0	0	0		ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.2998296725999	1	644.29983	643.292553	1.9723	0.0012707	-11.619	-0.0074859	-9.6465	-0.0062152	644.292474222465	22.236	0.21709	22.236	22.139	22.356	0	747	46	1.1737292	0.027134776	1.1737292	240.0934	0	5.5505676						160	10	2	NaN	NaN	NaN	0.8439	1	1857	1857		3.1533	0	1	14602			8088	4332	4681	4775	6385	6385					-0.04336136847484795
GPGAWEQE	8	Unmodified	_GPGAWEQE_					0	0	0		ENST00000389279.7_1_8:22462583-22462823:+|nuORF	ENST00000389279.7_1_8:22462583-22462823:+|nuORF	ENST00000389279.7_1_8:22462583-22462823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.3737228972	1	873.373723	872.366446	-0.55267	-0.00048269	-2.0708	-0.0018086	-2.6235	-0.0022913	873.3724094724327	55.218	0.09626	55.217	55.193	55.29	-0.00061798	450	49	1.3518641	0.028640747	1.3503447	275.0167	0	5.826538						88	5	2	NaN	NaN	NaN	0.84512	1	5557	5557		2.4615	0.53688	1	8444.7			8089	6748	4682	4776	6386	6386					-0.0748421347581143
GPGDLGGL	8	Unmodified	_GPGDLGGL_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3515308921002	1	685.351531	684.344254	2.2844	0.0015656	5.7666	0.0039522	8.051	0.0055178	685.3555634265708	26.287	0.38601	26.276	26.228	26.614	-0.011137	585	196	1.2711272	0.11715698	1.2696078	259.692	0	23.935242						962	17	4	NaN	NaN	NaN	0.76633	1	2851	2851		13.737	3.6855	1	352710			8090	3898	4683	4777	6387	6387					-0.010543931535607953
GPGEGCEG	8	Unmodified	_GPGEGCEG_					0	0	0			REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2508305695001	1	705.250831	704.243554	1.3353	0.00094173	1.0834	0.00076409	2.4188	0.0017058	705.2514490999729	26.529	0.048243	26.529	26.505	26.553	0	729	61	1.184579	0.036166072	1.184579	241.87605	0	7.384659						70	3	2	NaN	NaN	NaN	0.84887	1	3286	3286		0.32989	0	1	5746.5	+		8091	11770	4684	4778	6388	6388					-0.12039793198732696
GPGEGCEG	8	Unmodified	_GPGEGCEG_					0	0	0			REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2508305695001	1	705.250831	704.243554	1.4267	0.0010062	1.607	0.0011333	3.0337	0.0021395	705.2506419107148	26.432	0.024157	26.432	26.432	26.456	0	735	70	1.1809633	0.041588783	1.1809633	241.13774	0	8.491898						75	2	2	NaN	NaN	NaN	0.84727	1	3288	3288		1.2418	0	1	6398.6	+		8092	11770	4684	4778	6389	6389					-0.12039793198732696
GPGEGCEG	8	Unmodified						0	0	0			REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	705.250831	704.243554	1.3353	0.00094173	1.0834	0.00076409	2.4188	0.0017058	705.2514490999729	26.529	0.048243	26.529	26.505	26.553	0	729	61	1.184579	0.036166072	1.184579	241.87605		7.384659	-0.030724	-0.00044195	0.0025676	NaN	0.32989	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5746.5	+		8093	11770	4684	4778							-0.12039793198732696
GPGEGCEG	8	Unmodified						0	0	0			REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	705.250831	704.243554	1.4267	0.0010062	1.607	0.0011333	3.0337	0.0021395	705.2506419107148	26.432	0.024157	26.432	26.432	26.456	0	735	70	1.1809633	0.041588783	1.1809633	241.13774		8.491898	-0.018675	-0.0016112	-0.00014429	NaN	1.2418	75	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6398.6	+		8094	11770	4684	4778							-0.12039793198732696
GPGEGCEG	8	Unmodified						0	0	0			REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	REV__ENST00000337673.6_1_7:99097715-99097892:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	705.250831	704.243554	1.0347	0.00072975	5.4874	0.00387	6.5221	0.0045997	705.2523581011684	26.48	0.096512	26.47	26.421	26.518	-0.010645	732	94	1.1827712	0.056042433	1.1812518	241.5069		11.443161	0.018675	0.0011255	0.00014429	NaN	1.2418	236	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18950	+		8095	11770	4684	4778							-0.12039793198732696
GPGGGGGF	8	Unmodified	_GPGGGGGF_					0	0	0			REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.2678012627	1	605.267801	604.260525	0.95891	0.0005804	-9.4146	-0.0056983	-8.4556	-0.0051179	605.2621674818402	24.454	0.12062	24.454	24.381	24.502	0	789	55	1.1483859	0.032612324	1.1483859	235.22464	0	6.680008						161	6	3	NaN	NaN	NaN	0.84945	1	700	700		0	0	1	13707	+		8096	12056	4685	4779	6390	6390					-0.05743504530619248
GPGGGLVG	8	Unmodified	_GPGGGLVG_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	307.16883899305003	2	307.168839	612.323125	1.7983	0.00055239	-0.59239	-0.00018196	1.2059	0.00037043	307.16871677953054	55.893	0.072067	55.893	55.869	55.941	0	1497	40	0.71537006	0.024156868	0.71537006	292.96368	0	9.892914						87	4	3	NaN	NaN	NaN	0.84876	1	877	877		0.39566	0	1	9138.8			8097	3811	4686	4780	6391	6391					0.0014564153757419263
GPGGGLVG	8	Unmodified	_GPGGGLVG_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	307.16883899305003	2	307.168839	612.323125	0.11126	3.4177E-05	1.9787	0.00060781	2.09	0.00064198	307.1694124919841	55.891	0.072014	55.89	55.866	55.938	-0.00059128	1497	34	0.71537006	0.02044046	0.7138506	292.96368	0	8.370911						61	4	2	NaN	NaN	NaN	0.84876	1	831	831		0.39566	0	1	7102.8			8098	3811	4686	4780	6392	6392					0.0014564153757419263
GPGGGVKK	8	Unmodified	_GPGGGVKK_					0	0	0			REV__ENST00000518067.5_1_8:25309047-25315927:-|nuORF	REV__ENST00000518067.5_1_8:25309047-25315927:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.4147998509001	1	699.4148	698.407523	1.2301	0.00086036	-10.861	-0.0075962	-9.6307	-0.0067359	699.407414449684	59.181	0.14383	59.181	59.133	59.276	0	615	52	1.2531329	0.030608296	1.2531329	255.91473	0	6.250824						106	7	2	NaN	NaN	NaN	0.84876	1	3201	3201		0.39566	0	1	7197.2	+		8099	12584	4687	4781	6393	6393					0.046255923543299104
GPGGPLMP	8	Unmodified	_GPGGPLMP_					0	0	0			REV__ENSG00000105429|ENST00000251268|MEGF8	REV__ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3650724663	1	725.365072	724.357796	1.4643	0.0010622	3.9986	0.0029005	5.463	0.0039626	725.3685469610301	55.1	0.12048	55.1	55.052	55.172	0	621	148	1.2495319	0.08815789	1.2495319	255.00339	0	17.991196						261	6	3	NaN	NaN	NaN	0.84651	1	3676	3676		1.6704	0.42852	1	22202	+		8100	8958	4688	4782	6394	6394					-0.015408586459898288
GPGGPVMG	8	Unmodified	_GPGGPVMG_					0	0	0		ENST00000426739.6_1_19:44645834-44646468:+|nuORF	ENST00000426739.6_1_19:44645834-44646468:+|nuORF	ENST00000426739.6_1_19:44645834-44646468:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.7027	0.00057239	6.9862	0.0023485	8.6889	0.0029209	336.1649456364535	38.85	0.12012	38.855	38.783	38.903	0.0046806	1494	70	0.7172283	0.04275769	0.71570885	293.1717	0	17.477478						154	6	2	NaN	NaN	NaN	0.84651	1	2524	2524		1.6704	0	1	12296			8101	6947	4689	4783	6395	6395					-0.03749718197116181
GPGGPVMG	8	Unmodified						0	0	0		ENST00000426739.6_1_19:44645834-44646468:+|nuORF	ENST00000426739.6_1_19:44645834-44646468:+|nuORF	ENST00000426739.6_1_19:44645834-44646468:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	336.162699	670.310846	0.83018	0.00027908	5.8869	0.001979	6.7171	0.002258	336.16595712175206	39.02	0.048054	39.02	38.996	39.044	0	1530	79	0.6949163	0.04834789	0.6949163	284.05154		19.762543	0.08283	-0.00059713	-0.010396	NaN	1.6704	97	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7097.9			8102	6947	4689	4783							-0.03749718197116181
GPGGVNKG	8	Unmodified	_GPGGVNKG_					0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3627642804001	1	685.362764	684.355488	1.4152	0.00096995	-9.9946	-0.0068499	-8.5794	-0.00588	685.3556798880388	24.623	0.1688	24.61	24.586	24.755	-0.012394	714	52	1.1936152	0.0307132	1.1920958	243.85623	0	6.274719						144	8	2	NaN	NaN	NaN	0.8439	1	2850	2850		3.1533	0.36816	1	15571	+		8103	12983	4690	4784	6396	6396					0.0006842894057399462
GPGGVNKG	8	Unmodified						0	0	0			REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	REV__ENST00000608168.1_1_19:16003249-16008861:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	685.362764	684.355488	1.4152	0.00096995	-9.9946	-0.0068499	-8.5794	-0.00588	685.3556798880388	24.623	0.1688	24.61	24.586	24.755	-0.012394	714	52	1.1936152	0.0307132	1.1920958	243.85623		6.274719	-0.0062524	-0.00018327	-0.00075972	NaN	3.1533	144	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15571	+		8104	12983	4690	4784							0.0006842894057399462
GPGKGHGK	8	Unmodified	_GPGKGHGK_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4052977971002	1	737.405298	736.398021	1.9153	0.0014123	2.3691	0.001747	4.2844	0.0031593	737.4075434514474	25.201	0.072412	25.189	25.141	25.214	-0.012011	558	70	1.2873057	0.04134035	1.2857863	262.63248	0	8.434143						102	4	2	NaN	NaN	NaN	0.84876	1	3786	3786		0.39566	0.39566	1	8745.8			8105	5339	4691	4785	6397	6397					0.01927824068809514
GPGKGHGK	8	Unmodified						0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.405298	736.398021	1.5872	0.0011704	0.99341	0.00073255	2.5806	0.0019029	737.406437787605	25.178	0.07238	25.178	25.153	25.226	0	561	79	1.2855089	0.04675007	1.2855089	262.2659		9.537827	-0.0059424	-0.00062426	-0.0001387	NaN	0.39566	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8192.6			8106	5339	4691	4785							0.01927824068809514
GPGNPANL	8	Unmodified	_GPGNPANL_					0	0	0		ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.3733289667001	1	739.373329	738.366053	1.4351	0.0010611	-5.1455	-0.0038044	-3.7104	-0.0027433	739.3691879431893	27.133	0.21716	27.133	27.084	27.302	0	609	142	1.2567334	0.08456862	1.2567334	256.38275	0	17.252625						715	10	4	NaN	NaN	NaN	0.82797	1	3890	3890		5.4659	1.0528	1	98398			8107	5395	4692	4786	6398	6398					-0.013595884050005225
GPGPAKAG	8	Unmodified	_GPGPAKAG_					0	0	0			REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	327.68211354379997	2	327.682114	653.349674	1.0732	0.00035166	-6.1482	-0.0020146	-5.075	-0.001663	327.6802819717729	42.121	0.11992	42.13	42.13	42.25	0.0089951	1518	40	0.7023569	0.024177909	0.70083743	287.24155	0	9.88797						87	6	2	NaN	NaN	NaN	0.84876	1	2067	2067		0.39566	0	1	11121	+		8108	12207	4693	4787	6399	6399					0.00913330428898007
GPGPDPGE	8	Unmodified	_GPGPDPGE_					0	0	0			REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3100600079	1	725.31006	724.302784	1.3319	0.00096601	6.0644	0.0043985	7.3962	0.0053646	725.3139673009632	23.923	0.19295	23.923	23.851	24.044	0	657	61	1.2279087	0.03605783	1.2279087	250.5909	0	7.358658						188	9	2	NaN	NaN	NaN	0.80071	1	3670	3670		9.1232	0	1	18771	+		8109	12758	4694	4788	6400	6400					-0.07039573912902597
GPGPDPGE	8	Unmodified						0	0	0			REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	725.31006	724.302784	1.3319	0.00096601	6.0644	0.0043985	7.3962	0.0053646	725.3139673009632	23.923	0.19295	23.923	23.851	24.044	0	657	61	1.2279087	0.03605783	1.2279087	250.5909		7.358658	0.0066342	-2.8409E-05	0.00075972	NaN	9.1232	188	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18771	+		8110	12758	4694	4788							-0.07039573912902597
GPGPDPGE	8	Unmodified						0	0	0			REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	REV__ENST00000554950.1_1_14:100820110-100820143:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.31006	724.302784	1.5122	0.0010968	6.1369	0.0044512	7.6491	0.005548	725.3144773782782	23.923	0.19294	23.91	23.837	24.03	-0.013048	657	61	1.2279087	0.03605783	1.2263893	250.5909		7.358658	-0.0066342	2.4223E-05	-0.00075972	NaN	9.1232	156	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15935	+		8111	12758	4694	4788							-0.07039573912902597
GPGPGGGR	8	Unmodified	_GPGPGGGR_					0	0	0		ENSG00000125878|ENST00000246080|TCF15	REV__ENST00000604729.5_1_10:75545341-75545701:+|nuORF	REV__ENST00000604729.5_1_10:75545341-75545701:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.331798503	1	654.331799	653.324522	-0.64691	-0.00042329	-2.3873	-0.0015621	-3.0342	-0.0019854	654.3306261559164	46.412	0.23982	46.422	46.35	46.59	0.0098152	795	46	1.1447623	0.027181268	1.1432428	234.09319	0	5.558319						160	11	2	NaN	NaN	NaN	0.84945	1	2063	2063		0	0	1	16821			8112	2482	4695	4789	6401	6401					-0.016007243736794408
GPGPGRAP	8	Unmodified	_GPGPGRAP_					0	0	0		nc|ENSG00000143390|P48382-2|RFX5;ENSG00000143390|ENST00000452671|RFX5	REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.67355	0.00047713	-9.7227	-0.0068874	-9.0492	-0.0064102	708.3717739694341	32.151	0.33785	32.148	32.075	32.413	-0.0037613	660	109	1.2261056	0.064959764	1.2245861	250.33417	0	13.262848						478	15	3	NaN	NaN	NaN	0.84207	1	3296	3296		3.5732	0	1	106360	+		8113	11068	4696	4790	6402	6402					0.006081351774582799
GPGPRTAP	8	Unmodified	_GPGPRTAP_					0	0	0			REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.4049634461	1	752.404963	751.397687	1.1196	0.0008424	-10.185	-0.0076636	-9.0658	-0.0068212	752.3968737366982	33.092	0.19285	33.09	33.018	33.21	-0.0024757	603	61	1.2603331	0.03598845	1.2588136	257.03583	0	7.3395996						262	9	3	NaN	NaN	NaN	0.80071	1	4006	4006		9.1232	2.3292	1	29134	+		8114	11009	4697	4791	6403	6403					0.012044043489481737
GPGVRHLL	8	Unmodified	_GPGVRHLL_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.5100972196002	1	848.510097	847.502821	-0.46276	-0.00039266	10.022	0.0085039	9.5593	0.0081112	848.5184518501136	58.266	0.023949	58.266	58.266	58.29	-0.00048447	414	40	1.3733286	0.02323699	1.3718091	279.51044	0	4.7294006						52	2	2	NaN	NaN	NaN	0.84876	1	5227	5227		0.39566	0	1	7092	+		8115	8775	4698	4792	6404	6404					0.07296945545374456
GPHADSPVL	9	Unmodified	_GPHADSPVL_					0	0	0		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.7297920179	2	446.729792	891.445031	1.2073	0.00053932	-0.35026	-0.00015647	0.85701	0.00038285	446.7297508012653	16.182	0.096008	16.182	16.134	16.23	0	1362	61	0.79879075	0.036993504	0.79879075	324.8907	0	15.046326						126	5	3	NaN	NaN	NaN	0.11467	1	5944	5944		33.698	13.143	1	9012.3			8116	1494	4699	4793	6405	6405					-0.005033611707062846
GPHADSPVL	9	Unmodified						0	0	0		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	446.729792	891.445031	1.8333	0.000819	0.17585	7.8557E-05	2.0092	0.00089756	446.7298891997987	16.155	0.11991	16.142	16.118	16.238	-0.012993	1362	58	0.79879075	0.03513813	0.7972713	324.8907		14.2916565	-0.019892	0.00026535	-0.00075972	NaN	33.698	107	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9634.7			8117	1494	4699	4793							-0.005033611707062846
GPHASEPQL	9	Unmodified	_GPHASEPQL_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.23269884760003	2	468.232699	934.450845	0.28831	0.00013499	0.9985	0.00046753	1.2868	0.00060252	468.2332699360674	14.836	0.14412	14.824	14.8	14.944	-0.011737	1347	61	0.8080346	0.03695345	0.8065152	328.42093	0	15.019501						121	7	3	NaN	NaN	NaN	0.45297	1	6572	6572		11.548	4.6852	1	8827.8			8118	2655	4700	4794	6406	6406					-0.01900262659046348
GPHGLRRTLWA	11	Unmodified	_GPHGLRRTLWA_					0	0	0		nc|ENSG00000072182|Q96FT7-2|ASIC4;ENST00000461395.5_1_2:220378960-220396865:+|nuORF;nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.90715082670005	3	421.907151	1262.69962	2.7701	0.0011687	2.2031	0.0009295	4.9732	0.0020982	421.90837129348233	16.754	0.023935	16.741	16.717	16.741	-0.013294	1407	22	0.77102906	0.012968123	0.7695096	468.29114	0	7.8762817						25	2	2	NaN	NaN	NaN	0.77278	1	17274	17274		0.43218	0	1	1850.8			8119	790	4701	4795	6407	6407					0.07878125368324618
GPHSPDPLL	9	Unmodified	_GPHSPDPLL_					0	0	0		nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.74544208210006	2	466.745442	931.476331	1.6065	0.00074984	-1.9983	-0.00093268	-0.39174	-0.00018284	466.7446640548288	19.684	0.21613	19.684	19.612	19.828	0	1311	91	0.83019954	0.055412292	0.83019954	337.44534	0	22.52304						473	10	4	NaN	NaN	NaN	0.078597	1	6631	6631		38.918	2.3314	1	163240			8120	5159	4702	4796	6408	6408					0.00785211863387758
GPHSPDPLL	9	Unmodified	_GPHSPDPLL_					0	0	0		nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.74544208210006	2	466.745442	931.476331	0.89047	0.00041562	-0.33741	-0.00015748	0.55306	0.00025814	466.74527389089667	19.707	0.21661	19.693	19.621	19.837	-0.014141	1314	94	0.8283535	0.05726242	0.8268341	336.695	0	23.275055						446	10	4	NaN	NaN	NaN	0.049695	1	6495	6495		47.04	13.342	1	165860			8121	5159	4702	4796	6409	6409					0.00785211863387758
GPHTALARW	9	Unmodified	_GPHTALARW_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5373746026002	1	1008.53737	1007.5301	1.4257	0.0014379	-8.7875	-0.0088625	-7.3618	-0.0074247	1008.5279826798104	30.534	0.072372	30.529	30.505	30.577	-0.0057545	132	64	1.5405227	0.03717959	1.5390033	312.74316	0	7.547882						99	4	2	NaN	NaN	NaN	0.62619	1	8715	8715		4.4131	0.44458	1	7352	+		8122	8627	4703	4797	6410	6410					0.026634290857600718
GPHTALARW	9	Unmodified						0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.53737	1007.5301	1.4003	0.0014122	-10.825	-0.010917	-9.4246	-0.0095051	1008.5271068222254	30.56	0.072403	30.56	30.511	30.584	0	135	58	1.5387528	0.033642292	1.5387528	312.38388		6.829773	0.01544	-0.00069119	-0.00012523	NaN	4.4131	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6140.2	+		8123	8627	4703	4797							0.026634290857600718
GPHTALARW	9	Unmodified						0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1008.53737	1007.5301	1.4257	0.0014379	-8.7875	-0.0088625	-7.3618	-0.0074247	1008.5279826798104	30.534	0.072372	30.529	30.505	30.577	-0.0057545	132	64	1.5405227	0.03717959	1.5390033	312.74316		7.547882	-0.01544	0.0013636	0.00012523	NaN	4.4131	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7352	+		8124	8627	4703	4797							0.026634290857600718
GPIKPEPIL	9	Unmodified	_GPIKPEPIL_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.2973104771	2	482.29731	962.580068	1.6105	0.00077673	-2.4307	-0.0011723	-0.82022	-0.00039559	482.2963178053365	21.416	0.096296	21.416	21.368	21.464	0	1320	43	0.824661	0.025850594	0.824661	335.03665	0	10.502411						116	5	3	NaN	NaN	NaN	0.097143	1	7414	7414		36.235	8.446	1	16618			8125	107	4704	4798	6411	6411					0.09728118971031563
GPIKPEPIL	9	Unmodified						0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.29731	962.580068	2.0003	0.00096475	-1.935	-0.00093326	0.065297	3.1493E-05	482.29637446566494	21.44	0.096283	21.426	21.378	21.475	-0.014006	1320	52	0.824661	0.031395137	0.8231416	335.03665		12.754974	0.0050765	0.00022101	-0.00075972	NaN	36.235	119	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15017			8126	107	4704	4798							0.09728118971031563
GPISYVVVM	9	Oxidation (M)	_GPISYVVVM(Oxidation (M))_		GPISYVVVM(1)		GPISYVVVM(47)	0	0	1		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5121306340002	1	980.512131	979.504854	1.776	0.0017414	-8.7516	-0.0085811	-6.9756	-0.0068396	980.5036999974142	24.743	0.14474	24.743	24.647	24.791	0	225	151	1.4855686	0.08890438	1.4855686	301.70334	0	18.055542						380	7	3	NaN	NaN	NaN	0.049695	1	7865	7865		47.04	10.454	1	49422			8127	1494	4705	4799	6412	6412		171			0.01428193448316506
GPKGAGQA	8	Unmodified	_GPKGAGQA_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3627642803999	1	685.362764	684.355488	1.2604	0.00086382	-3.9446	-0.0027035	-2.6842	-0.0018397	685.3603817218411	29.352	0.14476	29.344	29.224	29.368	-0.0077209	1068	106	0.97906286	0.0640465	0.9775434	200.02304	0	13.084732						250	7	2	NaN	NaN	NaN	0.84727	1	2852	2852		1.2418	0	1	23393			8128	6824	4706	4800	6413	6413					0.0006842894055125726
GPKGKIKG	8	Unmodified	_GPKGKIKG_					0	0	0			REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	REV__tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.5039492092002	1	784.503949	783.496673	-0.21516	-0.00016879	3.0489	0.0023919	2.8338	0.0022231	784.5063869223983	56.371	0.1438	56.37	56.346	56.49	-0.00056458	462	97	1.3447032	0.05733025	1.3431838	274.04102	0	11.683502						188	7	3	NaN	NaN	NaN	0.84887	1	4459	4459		0.32989	0	1	29693	+		8129	13411	4707	4801	6414	6414					0.09626427313855856
GPLGPGVLA	9	Unmodified	_GPLGPGVLA_					0	0	0			REV__ENST00000316052.5_1_8:145133615-145133735:+|nuORF	REV__ENST00000316052.5_1_8:145133615-145133735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.4614156924999	1	780.461416	779.454139	1.785	0.0013931	-3.4503	-0.0026928	-1.6653	-0.0012997	780.4587242603053	28.822	0.24134	28.822	28.677	28.918	0	579	91	1.2747238	0.053959727	1.2747238	259.80292	0	10.997589						327	11	3	NaN	NaN	NaN	0.6762	1	4482	4482		1.2418	0	1	63614	+		8130	11704	4708	4802	6415	6415					0.05559032185601609
GPLGPGVLA	9	Unmodified						0	0	0			REV__ENST00000316052.5_1_8:145133615-145133735:+|nuORF	REV__ENST00000316052.5_1_8:145133615-145133735:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	780.461416	779.454139	1.785	0.0013931	-3.4503	-0.0026928	-1.6653	-0.0012997	780.4587242603053	28.822	0.24134	28.822	28.677	28.918	0	579	91	1.2747238	0.053959727	1.2747238	259.80292		10.997589	0.0045493	-0.00013339	0.00075972	NaN	1.2418	327	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63614	+		8131	11704	4708	4802							0.05559032185601609
GPLGQSGK	8	Unmodified	_GPLGQSGK_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.4046290951001	1	743.404629	742.397353	0.99549	0.00074005	-8.2899	-0.0061627	-7.2944	-0.0054227	743.3986819584685	30.873	0.072369	30.873	30.849	30.922	0	570	40	1.2801172	0.023368835	1.2801172	261.12738	0	4.7669373						68	4	2	NaN	NaN	NaN	0.83913	1	3952	3952		3.9685	0	1	4431.3	+		8132	11119	4709	4803	6416	6416					0.015849846290961978
GPLGQSGK	8	Unmodified						0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.404629	742.397353	0.99549	0.00074005	-8.2899	-0.0061627	-7.2944	-0.0054227	743.3986819584685	30.873	0.072369	30.873	30.849	30.922	0	570	40	1.2801172	0.023368835	1.2801172	261.12738		4.7669373	0.17231	0.0011777	-0.00013899	NaN	3.9685	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4431.3	+		8133	11119	4709	4803							0.015849846290961978
GPLGQSGK	8	Unmodified						0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	743.404629	742.397353	1.906	0.0014169	-13.14	-0.0097687	-11.235	-0.0083518	743.3944466744574	30.534	0.048252	30.529	30.505	30.553	-0.0057545	567	43	1.2819146	0.025165081	1.2803952	261.49405		5.133362	-0.17231	-0.0024282	0.00013899	NaN	3.9685	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3406.4	+		8134	11119	4709	4803							0.015849846290961978
GPMNAERE	8	Unmodified	_GPMNAERE_					0	0	0			REV__nc|ENSG00000204403|Q6UXS9-8|CASP12	REV__nc|ENSG00000204403|Q6UXS9-8|CASP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.2030841284	2	452.203084	902.391615	0.91502	0.00041377	-3.6388	-0.0016455	-2.7238	-0.0012317	452.20103992278274	20.814	0.07226	20.814	20.79	20.862	0	1536	40	0.69119483	0.024193645	0.69119483	281.07666	0	9.83844						48	4	2	NaN	NaN	NaN	0.84692	1	6121	6121		1.4396	0.36755	1	3979.1	+		8135	13218	4710	4804	6417	6417					-0.06348481944883133
GPNGGGEL	8	Unmodified	_GPNGGGEL_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-2|GOPC	REV__nc|ENSG00000047932|Q9HD26-2|GOPC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.3260444231001	1	700.326044	699.318768	1.5113	0.0010584	-10.601	-0.0074241	-9.0896	-0.0063657	700.3185413536092	23.441	0.21715	23.427	23.379	23.596	-0.013294	597	64	1.2639319	0.03778994	1.2624124	258.11362	0	7.71727						344	10	3	NaN	NaN	NaN	0.80692	1	3144	3144		8.2903	0	1	56918	+		8136	8477	4711	4805	6418	6418					-0.042918676759882146
GPNGGGEL	8	Unmodified						0	0	0			REV__nc|ENSG00000047932|Q9HD26-2|GOPC	REV__nc|ENSG00000047932|Q9HD26-2|GOPC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	700.326044	699.318768	1.5113	0.0010584	-10.601	-0.0074241	-9.0896	-0.0063657	700.3185413536092	23.441	0.21715	23.427	23.379	23.596	-0.013294	597	64	1.2639319	0.03778994	1.2624124	258.11362		7.71727	-0.006872	-9.9153E-06	0.00013995	NaN	8.2903	344	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56918	+		8137	8477	4711	4805							-0.042918676759882146
GPNGPPGV	8	Unmodified	_GPNGPPGV_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3518652431002	1	694.351865	693.344589	0.98696	0.00068529	6.9388	0.004818	7.9258	0.0055033	694.3566817883461	26.818	0.12066	26.808	26.783	26.904	-0.010645	585	49	1.2711272	0.028778553	1.2696078	259.6259	0	5.8779907						91	6	2	NaN	NaN	NaN	0.84692	1	3046	3046		1.4396	0	1	9730.1	+		8138	10348	4712	4806	6419	6419					-0.014349734337088194
GPNGPPGV	8	Unmodified						0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	694.351865	693.344589	1.2505	0.00086831	5.9658	0.0041423	7.2163	0.0050106	694.3560189290569	26.795	0.096968	26.795	26.77	26.867	0	585	79	1.2711272	0.046785116	1.2711272	259.6259		9.555786	-0.0063293	-0.00030457	0.00075972	NaN	1.4396	127	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13455	+		8139	10348	4712	4806							-0.014349734337088194
GPNGPPGV	8	Unmodified						0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.351865	693.344589	0.98696	0.00068529	6.9388	0.004818	7.9258	0.0055033	694.3566817883461	26.818	0.12066	26.808	26.783	26.904	-0.010645	585	49	1.2711272	0.028778553	1.2696078	259.6259		5.8779907	0.0063293	0.00037108	-0.00075972	NaN	1.4396	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9730.1	+		8140	10348	4712	4806							-0.014349734337088194
GPNSSTNM	8	Unmodified	_GPNSSTNM_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.3301435230002	1	807.330144	806.322867	1.8424	0.0014874	1.0895	0.00087962	2.9319	0.002367	807.3317495188456	28.943	0.1931	28.943	28.894	29.087	0	414	73	1.3733286	0.042919874	1.3733286	279.73822	0	8.742493						279	9	3	NaN	NaN	NaN	0.8439	1	4835	4835		3.1533	0	1	33251	+		8141	11136	4713	4807	6420	6420					-0.0880414624457444
GPNSSTNM	8	Unmodified						0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.330144	806.322867	1.8424	0.0014874	1.0895	0.00087962	2.9319	0.002367	807.3317495188456	28.943	0.1931	28.943	28.894	29.087	0	414	73	1.3733286	0.042919874	1.3733286	279.73822		8.742493	-0.019896	-0.00032371	0.0016535	NaN	3.1533	279	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33251	+		8142	11136	4713	4807							-0.0880414624457444
GPNSSTNM	8	Unmodified						0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.330144	806.322867	1.3669	0.0011035	1.9692	0.0015898	3.3361	0.0026933	807.332670842665	28.99	0.26546	28.982	28.934	29.2	-0.0077229	417	70	1.3715409	0.04112935	1.3700215	279.37408		8.377777	0.019896	0.00038646	-0.0016535	NaN	3.1533	335	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42016	+		8143	11136	4713	4807							-0.0880414624457444
GPPGAKGM	8	Unmodified	_GPPGAKGM_					0	0	0			REV__ENSG00000171812|ENST00000397799|COL8A2	REV__ENSG00000171812|ENST00000397799|COL8A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.3603214394002	1	714.360321	713.353045	0.67769	0.00048412	0.64961	0.00046406	1.3273	0.00094817	714.3615464497896	31.813	0.16896	31.809	31.761	31.93	-0.0044155	705	37	1.1990347	0.021671772	1.1975152	244.76805	0	4.424011						102	8	2	NaN	NaN	NaN	0.84692	1	3414	3414		1.4396	0	1	6593.6	+		8144	10634	4714	4808	6421	6421					-0.015097427887326376
GPPGANGS	8	Unmodified	_GPPGANGS_					0	0	0		ENSG00000163145|ENST00000444304|C1QTNF7;nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	ENSG00000163145|ENST00000444304|C1QTNF7	ENSG00000163145|ENST00000444304|C1QTNF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2998296726001	1	656.29983	655.292553	1.3901	0.0009123	6.9397	0.0045546	8.3298	0.0054669	656.3045398491637	23.754	0.24097	23.754	23.73	23.971	0	750	61	1.1719203	0.036185503	1.1719203	239.63194	0	7.399124						267	11	3	NaN	NaN	NaN	0.84727	1	2174	2174		1.2418	0	1	30683			8145	4206	4715	4809	6422	6422					-0.0488813684746674
GPPGEAKG	8	Unmodified	_GPPGEAKG_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3624299294002	1	712.36243	711.355153	0.67224	0.00047888	8.007	0.0057039	8.6793	0.0061828	712.3675896602465	30.801	0.14478	30.801	30.777	30.922	0	621	67	1.2495319	0.039600134	1.2495319	255.08989	0	8.084305						145	7	2	NaN	NaN	NaN	0.84207	1	3452	3452		3.5732	0	1	13939	+		8146	11119	4716	4810	6423	6423					-0.012069907792806589
GPPGEAKG	8	Unmodified						0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	712.36243	711.355153	0.67224	0.00047888	8.007	0.0057039	8.6793	0.0061828	712.3675896602465	30.801	0.14478	30.801	30.777	30.922	0	621	67	1.2495319	0.039600134	1.2495319	255.08989		8.084305	0.0034256	0.00047931	-0.00014062	NaN	3.5732	145	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13939	+		8147	11119	4716	4810							-0.012069907792806589
GPPGGRSL	8	Unmodified	_GPPGGRSL_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8;ENST00000487793.5_1_22:19968732-19974706:-|nuORF;ENST00000473551.5_1_22:19968732-19978281:-|nuORF;nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	740.4049634461002	1	740.404963	739.397687	0.86012	0.00063683	-10.026	-0.0074235	-9.1662	-0.0067867	740.3980671938137	30.922	0.16891	30.922	30.825	30.994	0	579	55	1.2747238	0.032361984	1.2747238	260.04636	0	6.6019287						172	8	3	NaN	NaN	NaN	0.81756	1	3899	3899		6.8632	1.9535	1	16519			8148	1171	4717	4811	6424	6424					0.017564043489528558
GPPGGTTS	8	Unmodified	_GPPGGTTS_					0	0	0		ENST00000540112.1_3_11:60703176-60704376:+|nuORF;nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	337.1612109262	2	337.161211	672.307869	1.0035	0.00033833	7.4503	0.0025119	8.4537	0.0028503	337.16387173122973	40.104	0.096107	40.104	40.008	40.104	0	1518	43	0.7023569	0.026033461	0.7023569	287.0759	0	10.640717						71	5	2	NaN	NaN	NaN	0.84455	1	2648	2648		2.7852	0	1	5009.7			8149	339	4718	4812	6425	6425					-0.0413927005027972
GPPGKRGP	8	Unmodified	_GPPGKRGP_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;nc|ENSG00000206384|A6NMZ7-2|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant;ENSG00000206384|ENST00000358511|COL6A6;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	ENSG00000080573|ENST00000264828|COL5A3;nc|ENSG00000206384|A6NMZ7-2|COL6A6;nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.22193719605	2	383.221937	764.429321	1.0483	0.00040172	-5.4594	-0.0020921	-4.4111	-0.0016904	383.2193783579984	12.604	0.28806	12.604	12.46	12.748	0	1527	76	0.69677675	0.04651618	0.69677675	284.11172	0	18.96701						306	13	2	NaN	NaN	NaN	0.78264	1	4278	4278		11.548	0	1	56922			8150	905;641;175	4719	4813	6426	6426					0.0376839710289687
GPPGKRGP	8	Unmodified	_GPPGKRGP_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;nc|ENSG00000206384|A6NMZ7-2|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant;ENSG00000206384|ENST00000358511|COL6A6;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	ENSG00000080573|ENST00000264828|COL5A3;nc|ENSG00000206384|A6NMZ7-2|COL6A6;nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.22193719605	2	383.221937	764.429321	1.2135	0.00046505	-1.8563	-0.00071139	-0.64282	-0.00024634	383.2213847282031	12.63	0.16818	12.621	12.525	12.693	-0.0088415	1461	34	0.7376554	0.020413876	0.73613596	300.78003	0	8.3237915						114	8	2	NaN	NaN	NaN	0.74229	1	4204	4204		16.417	0	1	11604			8151	905;641;175	4719	4813	6427	6427					0.0376839710289687
GPPLAGYPGPL	11	Unmodified	_GPPLAGYPGPL_					0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5618580186	1	1038.56186	1037.55458	1.2022	0.0012485	-2.2588	-0.0023459	-1.0566	-0.0010974	1038.561840561484	31.959	0.14483	31.959	31.911	32.056	0	156	76	1.5263584	0.044270873	1.5263584	309.74655	0	8.983978						313	7	3	NaN	NaN	NaN	0.44178	1	10108	10108		20.555	1.4371	1	45090	+		8152	10134	4720	4814	6428	6428					0.03730644448637577
GPPLCGAG	8	Unmodified	_GPPLCGAG_					0	0	0			REV__ENST00000594671.5_1_19:4676136-4676472:-|nuORF	REV__ENST00000594671.5_1_19:4676136-4676472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015	2	336.162699	670.310846	1.4156	0.00047587	6.5557	0.0022038	7.9713	0.0026797	336.1649814625834	40.102	0.16855	40.108	39.939	40.108	0.0060463	1515	67	0.7042165	0.04091865	0.70269704	287.85306	0	16.725769						172	8	2	NaN	NaN	NaN	0.84651	1	2522	2522		1.6704	0	1	17583	+		8153	12939	4721	4815	6429	6429					-0.037497181971275495
GPPPGGSN	8	Unmodified	_GPPPGGSN_					0	0	0		ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3154797368001	1	682.31548	681.308203	1.8565	0.0012667	-0.59563	-0.00040641	1.2609	0.0008603	682.3153352345537	28.291	0.072365	28.291	28.267	28.339	0	1074	49	0.9754029	0.029289424	0.9754029	199.29277	0	5.984375						68	4	2	NaN	NaN	NaN	0.84756	1	2866	2866		1.072	0	1	5031.7			8154	6138	4722	4816	6430	6430					-0.04519850330427744
GPPPHGGG	8	Unmodified	_GPPPHGGG_					0	0	0			REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|6|1|sense	REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|6|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3208994657002	1	675.320899	674.313623	1.4797	0.00099928	-0.62209	-0.00042011	0.85762	0.00057917	675.3218330263533	56.469	0.16785	56.469	56.421	56.589	0	636	94	1.2405256	0.055880785	1.2405256	253.51398	0	11.4198						268	8	5	NaN	NaN	NaN	0.84945	1	2705	2705		0	0	1	38841	+		8155	13349	4723	4817	6431	6431					-0.03656126747932831
GPPQSGGG	8	Unmodified	_GPPQSGGG_					0	0	0			REV__ENSG00000128652|ENST00000683222|HOXD3	REV__ENSG00000128652|ENST00000683222|HOXD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2998296726003	1	656.29983	655.292553	1.3863	0.00090982	1.2116	0.00079514	2.5978	0.001705	656.3006982038748	56.589	0.047901	56.589	56.565	56.613	0	648	58	1.2333171	0.034256816	1.2333171	252.18626	0	7.0047607						71	3	2	NaN	NaN	NaN	0.84897	1	2173	2173		0.27539	0	1	7248.4	+		8156	9453	4724	4818	6432	6432					-0.04888136847455371
GPPVDKGG	8	Unmodified	_GPPVDKGG_					0	0	0		ENST00000374941.8_2_X:55744554-55744722:+|nuORF	ENST00000374941.8_2_X:55744554-55744722:+|nuORF	ENST00000374941.8_2_X:55744554-55744722:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3780799936002	1	726.37808	725.370804	1.0901	0.00079184	5.3347	0.003875	6.4248	0.0046668	726.3821788204165	26.891	0.16896	26.88	26.832	27.001	-0.010643	606	67	1.2585332	0.039600134	1.2570138	256.83374	0	8.08136						239	8	3	NaN	NaN	NaN	0.81756	1	3612	3612		6.8632	1.9535	1	31351			8157	6691	4725	4819	6433	6433					-0.002867042622256122
GPPVVGGG	8	Unmodified	_GPPVVGGG_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.3460515837003	1	639.346052	638.338775	1.6022	0.0010243	-1.3555	-0.00086662	0.24667	0.00015771	639.3438610033379	37.504	0.16865	37.506	37.458	37.627	0.0028229	714	70	1.1936152	0.04157102	1.1920958	244.20056	0	8.504959						121	8	2	NaN	NaN	NaN	0.84945	1	1608	1608		0	0	1	10234			8158	1747	4726	4820	6434	6434					0.0051392805463592595
GPPVVGGG	8	Unmodified						0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	639.346052	638.338775	1.0593	0.00067728	-3.2904	-0.0021037	-2.2311	-0.0014264	639.3427625619194	37.506	0.21664	37.506	37.41	37.626	0	711	70	1.1954219	0.04156649	1.1954219	244.57019		8.504059	-0.00015833	-0.00061651	0.001663	NaN	0	142	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10978			8159	1747	4726	4820							0.0051392805463592595
GPRGPKGP	8	Unmodified	_GPRGPKGP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.22193719605	2	383.221937	764.429321	1.1619	0.00044527	-1.5782	-0.00060478	-0.41624	-0.00015951	383.22143561107407	12.63	0.24027	12.621	12.525	12.765	-0.0088415	1527	52	0.69677675	0.031627536	0.6952573	284.1117	0	12.896179						259	11	3	NaN	NaN	NaN	0.77489	1	4205	4205		12.588	3.4647	1	40169	+		8160	10348	4727	4821	6435	6435					0.0376839710289687
GPRGPKGP	8	Unmodified						0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	383.221937	764.429321	0.88577	0.00033945	-3.2881	-0.0012601	-2.4023	-0.00092062	383.2207038707244	12.868	0.19217	12.868	12.796	12.988	0	1530	46	0.6949163	0.027909696	0.6949163	283.35312		11.380188	0.12351	-0.00082872	-0.0001705	NaN	12.588	186	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19404	+		8161	10348	4727	4821							0.0376839710289687
GPRGPKGP	8	Unmodified						0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	383.221937	764.429321	1.1619	0.00044527	-1.5782	-0.00060478	-0.41624	-0.00015951	383.22143561107407	12.63	0.24027	12.621	12.525	12.765	-0.0088415	1527	52	0.69677675	0.031627536	0.6952573	284.1117		12.896179	-0.12351	0.00048185	0.0001705	NaN	12.588	259	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40169	+		8162	10348	4727	4821							0.0376839710289687
GPSPGGPIF	9	Unmodified	_GPSPGGPIF_					0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.7161533264	2	414.716153	827.417754	1.5336	0.000636	3.1535	0.0013078	4.6871	0.0019438	414.71749998736067	34.469	0.12065	34.469	34.445	34.565	0	1314	145	0.8283535	0.08877498	0.8283535	337.30978	0	36.149597						294	6	3	NaN	NaN	NaN	0.62619	1	5113	5113		4.4131	0	1	27020	+		8163	10024	4728	4822	6436	6436					-0.002858447110952511
GPSPGGPIF	9	Unmodified	_GPSPGGPIF_					0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.7161533264	2	414.716153	827.417754	0.93132	0.00038623	3.3793	0.0014015	4.3107	0.0017877	414.7176096458801	34.468	0.16887	34.467	34.419	34.587	-0.0006485	1311	154	0.83019954	0.09431827	0.8286801	338.06146	0	38.40689						257	8	3	NaN	NaN	NaN	0.45297	1	4992	4992		11.548	3.2582	1	25780	+		8164	10024	4728	4822	6437	6437					-0.002858447110952511
GPSPGGPIF	9	Unmodified	_GPSPGGPIF_					0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.4250301862	1	828.42503	827.417754	1.1799	0.00097744	4.385	0.0036326	5.5648	0.00461	828.4285359691661	34.468	0.19299	34.467	34.419	34.612	-0.0006485	426	82	1.3661768	0.048297644	1.3646574	278.1626	0	9.83374						317	9	3	NaN	NaN	NaN	0.45297	1	4993	4993		11.548	0.94349	1	47422	+		8165	10024	4728	4822	6438	6438					-0.002858447110952511
GPSPGGPIF	9	Unmodified						0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	828.42503	827.417754	1.9496	0.0016151	4.5287	0.0037517	6.4784	0.0053668	828.4287841084417	34.469	0.21716	34.469	34.421	34.638	0	426	94	1.3661768	0.055476546	1.3661768	278.1626		11.29538	0.0009477	5.2508E-05	0.00075972	NaN	11.548	311	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49779	+		8166	10024	4728	4822							-0.002858447110952511
GPSPGGPIF	9	Unmodified						0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	414.716153	827.417754	1.5336	0.000636	3.1535	0.0013078	4.6871	0.0019438	414.71749998736067	34.469	0.12065	34.469	34.445	34.565	0	1314	145	0.8283535	0.08877498	0.8283535	337.30978		36.149597	0.0009477	-9.0662E-05	-0.00016327	NaN	11.548	294	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27020	+		8167	10024	4728	4822							-0.002858447110952511
GPSPGGPIF	9	Unmodified						0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	828.42503	827.417754	1.1799	0.00097744	4.385	0.0036326	5.5648	0.00461	828.4285359691661	34.468	0.19299	34.467	34.419	34.612	-0.0006485	426	82	1.3661768	0.048297644	1.3646574	278.1626		9.83374	-0.0009477	-6.6588E-05	-0.00075972	NaN	11.548	317	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47422	+		8168	10024	4728	4822							-0.002858447110952511
GPSPGGPIF	9	Unmodified						0	0	0			REV__ENSG00000151176|ENST00000280800|PLBD2	REV__ENSG00000151176|ENST00000280800|PLBD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	414.716153	827.417754	0.93132	0.00038623	3.3793	0.0014015	4.3107	0.0017877	414.7176096458801	34.468	0.16887	34.467	34.419	34.587	-0.0006485	1311	154	0.83019954	0.09431827	0.8286801	338.06146		38.40689	-0.0009477	9.6621E-05	0.00016327	NaN	11.548	257	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25780	+		8169	10024	4728	4822							-0.002858447110952511
GPSQAGRRTI	10	Unmodified	_GPSQAGRRTI_					0	0	0			REV__nc|ENSG00000169347|P55259-4|GP2	REV__nc|ENSG00000169347|P55259-4|GP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7912465692501	2	521.791247	1041.56794	1.3085	0.00068276	-0.8624	-0.00044999	0.44608	0.00023276	521.7908790314127	29.28	0.072403	29.28	29.256	29.329	0	1272	43	0.854179	0.025803149	0.854179	346.65814	0	10.471893						64	4	2	NaN	NaN	NaN	0.76892	1	10286	10286		3.2116	0	1	6723.6	+		8170	10546	4729	4823	6439	6439					0.0488189528057319
GPSSDHSSG	9	Unmodified	_GPSSDHSSG_					0	0	0		ENSG00000172554|ENST00000308624|SNTG2	ENSG00000172554|ENST00000308624|SNTG2	ENSG00000172554|ENST00000308624|SNTG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	830.3275009861001	1	830.327501	829.320225	1.7581	0.0014598	-9.1617	-0.0076072	-7.4035	-0.0061474	830.3191086123835	26.697	0.072378	26.687	26.663	26.735	-0.010645	501	34	1.3214091	0.019725204	1.3198897	269.03757	0	4.015991						63	4	2	NaN	NaN	NaN	0.63698	1	5011	5011		3.9685	0.81517	1	3422			8171	4844	4730	4824	6440	6440					-0.10126278377890685
GPTSGPFY	8	Unmodified	_GPTSGPFY_					0	0	0		ENST00000372684.7_1_1:41113477-41131193:-|nuORF	ENST00000372684.7_1_1:41113477-41131193:-|nuORF	ENST00000372684.7_1_1:41113477-41131193:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.19251105459995	2	413.192511	824.370469	0.51324	0.00021207	-0.10059	-4.1562E-05	0.41265	0.00017051	413.1927123958393	32.031	0.14479	32.027	32.027	32.172	-0.0037613	1365	100	0.7969414	0.06110221	0.79542196	324.53815	0	24.88263						300	7	3	NaN	NaN	NaN	0.84207	1	4959	4959		3.5732	1.3969	1	34488			8172	6664	4731	4825	6441	6441					-0.048741239820969895
GPVEDFVSL	9	Unmodified	_GPVEDFVSL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4829389956002	1	962.482939	961.475663	1.4321	0.0013784	-0.34858	-0.0003355	1.0836	0.0010429	962.4823752646032	28.87	0.19306	28.87	28.798	28.991	0	267	82	1.4606913	0.048026085	1.4606913	296.72815	0	9.756134						327	9	3	NaN	NaN	NaN	0.028349	1	7366	7366		61.271	31.673	1	30702			8173	3389	4732	4826	6442	6442					-0.006616275763121848
GPVEDFVSL	9	Unmodified	_GPVEDFVSL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4829389956002	1	962.482939	961.475663	1.1781	0.0011339	-0.60286	-0.00058025	0.57524	0.00055366	962.4817243409925	28.869	0.16895	28.861	28.789	28.958	-0.0083504	264	79	1.4624695	0.046239972	1.46095	297.08936	0	9.393311						247	8	2	NaN	NaN	NaN	0.062072	1	7219	7219		41.785	19.95	1	29633			8174	3389	4732	4826	6443	6443					-0.006616275763121848
GPWHLPAPP	9	Unmodified	_GPWHLPAPP_					0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.2585196676	2	486.25852	970.502486	1.6644	0.00080931	-6.8488	-0.0033303	-5.1845	-0.002521	486.2552952817118	22.235	0.072378	22.222	22.222	22.294	-0.013731	1329	43	0.81912065	0.025856256	0.8176012	332.74753	0	10.5034485						62	4	2	NaN	NaN	NaN	0.58547	1	7474	7474		6.0903	0.62448	1	5304.7	+		8175	10752	4733	4827	6444	6444					0.016055258255164517
GPWHLPAPP	9	Unmodified						0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.25852	970.502486	2.0276	0.00098593	-9.3896	-0.0045658	-7.362	-0.0035798	486.2546339164257	22.621	0.096504	22.621	22.597	22.694	0	1332	37	0.8172735	0.022167265	0.8172735	331.99716		9.004913	0.19991	-0.0015978	-0.00016387	NaN	6.0903	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3804.9	+		8176	10752	4733	4827							0.016055258255164517
GPWHLPAPP	9	Unmodified						0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.25852	970.502486	1.6644	0.00080931	-6.8488	-0.0033303	-5.1845	-0.002521	486.2552952817118	22.235	0.072378	22.222	22.222	22.294	-0.013731	1329	43	0.81912065	0.025856256	0.8176012	332.74753		10.5034485	-0.19991	0.00087307	0.00016387	NaN	6.0903	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5304.7	+		8177	10752	4733	4827							0.016055258255164517
GPWVGRGPP	9	Unmodified	_GPWVGRGPP_					0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4893617775002	1	922.489362	921.482085	-0.34052	-0.00031412	-7.1211	-0.0065691	-7.4616	-0.0068832	922.4824682514892	56.779	0.096146	56.778	56.754	56.85	-0.00056458	189	52	1.5068626	0.030152082	1.5053432	306.29514	0	6.128937						108	5	3	NaN	NaN	NaN	0.65818	1	6315	6315		2.7852	0.32367	1	6179.9	+		8178	13353	4734	4828	6445	6445					0.018203551657165917
GPWVGRGPP	9	Unmodified						0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	922.489362	921.482085	1.8299	0.0016881	-6.8345	-0.0063047	-5.0045	-0.0046166	922.4841450107009	56.78	0.096146	56.78	56.756	56.852	0	189	85	1.5068626	0.049685955	1.5068626	306.29514		10.099518	0.0011122	0.0001255	0.00075972	NaN	2.7852	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6348.5	+		8179	13353	4734	4828							0.018203551657165917
GPWVGRGPP	9	Unmodified						0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|79|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	922.489362	921.482085	-0.34052	-0.00031412	-7.1211	-0.0065691	-7.4616	-0.0068832	922.4824682514892	56.779	0.096146	56.778	56.754	56.85	-0.00056458	189	52	1.5068626	0.030152082	1.5053432	306.29514		6.128937	-0.0011122	-0.00013889	-0.00075972	NaN	2.7852	108	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6179.9	+		8180	13353	4734	4828							0.018203551657165917
GQAAAAPD	8	Unmodified	_GQAAAAPD_					0	0	0		nc|ENSG00000166473|Q7Z442-3|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442-3|PKD1L2	nc|ENSG00000166473|Q7Z442-3|PKD1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.3260444230999	1	700.326044	699.318768	1.4988	0.0010496	-10.569	-0.0074019	-9.0704	-0.0063522	700.3186281521419	23.441	0.28931	23.441	23.369	23.658	0	600	112	1.2621325	0.066639304	1.2621325	257.74615	0	13.608734						373	13	3	NaN	NaN	NaN	0.82332	1	3211	3211		6.0903	0	1	58513			8181	7974	4735	4829	6446	6446					-0.04291867676010952
GQAGGGGF	8	Unmodified	_GQAGGGGF_					0	0	0		PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant;nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.2892649863	1	650.289265	649.281989	1.3376	0.00086983	-10.939	-0.0071133	-9.6011	-0.0062435	650.2820280385416	24.55	0.16877	24.55	24.502	24.671	0	717	73	1.1918083	0.043380737	1.1918083	243.74481	0	8.87207						269	8	3	NaN	NaN	NaN	0.84651	1	2035	2035		1.6704	0.42852	1	37043			8182	4408	4736	4830	6447	6447					-0.05668119501899582
GQAGGGGF	8	Unmodified	_GQAGGGGF_					0	0	0		PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant;nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.2892649863	1	650.289265	649.281989	1.0711	0.00069651	-10.636	-0.0069164	-9.5647	-0.0062199	650.2818666279271	24.55	0.24125	24.538	24.489	24.731	-0.012394	714	73	1.1936152	0.043380737	1.1920958	244.11435	0	8.87207						291	11	3	NaN	NaN	NaN	0.82332	1	1948	1948		6.0903	2.937	1	35453			8183	4408	4736	4830	6448	6448					-0.05668119501899582
GQAPAPPF	8	Unmodified	_GQAPAPPF_					0	0	0			REV__tr|U7SVB9|U7SVB9_FUSNUPorphobilinogendeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemCPE=3SV=1	REV__tr|U7SVB9|U7SVB9_FUSNUPorphobilinogendeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hemCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3988154357	1	784.398815	783.391539	1.4502	0.0011376	6.0067	0.0047116	7.4569	0.0058492	784.4035860385063	32.225	0.26546	32.225	32.152	32.418	0	552	61	1.2908988	0.035927057	1.2908988	263.07663	0	7.3217163						271	12	3	NaN	NaN	NaN	0.81807	1	4545	4545		6.794	2.7403	1	31954	+		8184	13534	4737	4831	6449	6449					-0.008821138825737762
GQARGAGG	8	Unmodified	_GQARGAGG_					0	0	0		ENST00000541143.5_1_12:131438494-131438635:+|nuORF	ENST00000541143.5_1_12:131438494-131438635:+|nuORF	ENST00000541143.5_1_12:131438494-131438635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3376121624002	1	673.337612	672.330336	1.2584	0.00084736	3.2584	0.002194	4.5168	0.0030414	673.3398018098376	20.959	0.19252	20.959	20.887	21.079	0	693	127	1.2062578	0.07591629	1.2062578	246.52545	0	15.515167						375	9	2	NaN	NaN	NaN	0.84727	1	2650	2650		1.2418	0	1	57191			8185	7496	4738	4832	6450	6450					-0.018936258619874025
GQARGAGG	8	Unmodified	_GQARGAGG_					0	0	0		ENST00000541143.5_1_12:131438494-131438635:+|nuORF	ENST00000541143.5_1_12:131438494-131438635:+|nuORF	ENST00000541143.5_1_12:131438494-131438635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3376121624002	1	673.337612	672.330336	0.76857	0.00051751	3.6821	0.0024793	4.4507	0.0029968	673.3397940492874	20.959	0.19264	20.945	20.849	21.041	-0.014088	690	145	1.2080631	0.08678019	1.2065437	246.8944	0	17.735428						393	9	2	NaN	NaN	NaN	0.84455	1	2572	2572		2.7852	0	1	59381			8186	7496	4738	4832	6451	6451					-0.018936258619874025
GQCHCGGC	8	Unmodified	_GQCHCGGC_					0	0	0			REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.2272751309001	1	764.227275	763.219999	1.8184	0.0013897	1.0574	0.00080813	2.8759	0.0021978	764.2301118009211	22.573	0.048273	22.573	22.573	22.621	0	1071	52	0.977233	0.031118333	0.977233	199.24425	0	6.3446045						72	3	2	NaN	NaN	NaN	0.84945	1	4253	4253		0	0	1	5579.4	+		8187	12975	4739	4833	6452	6452					-0.17108253508547477
GQCHCGGC	8	Unmodified	_GQCHCGGC_					0	0	0			REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.2272751309001	1	764.227275	763.219999	1.8444	0.0014096	-0.064895	-4.9594E-05	1.7795	0.00136	764.2282806785048	22.645	0.072355	22.631	22.583	22.655	-0.01354	1074	55	0.9754029	0.032954156	0.97388345	198.87112	0	6.7188873						76	4	2	NaN	NaN	NaN	0.84945	1	4178	4178		0	0	1	5702.8	+		8188	12975	4739	4833	6453	6453					-0.17108253508547477
GQCHCGGC	8	Unmodified						0	0	0			REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.227275	763.219999	1.8184	0.0013897	1.0574	0.00080813	2.8759	0.0021978	764.2301118009211	22.573	0.048273	22.573	22.573	22.621	0	1071	52	0.977233	0.031118333	0.977233	199.24425		6.3446045	-0.029129	0.00046891	0.0016748	NaN	0	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5579.4	+		8189	12975	4739	4833							-0.17108253508547477
GQCHCGGC	8	Unmodified						0	0	0			REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	REV__ENST00000606061.1_1_20:32881882-32881957:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.227275	763.219999	1.8444	0.0014096	-0.064895	-4.9594E-05	1.7795	0.00136	764.2282806785048	22.645	0.072355	22.631	22.583	22.655	-0.01354	1074	55	0.9754029	0.032954156	0.97388345	198.87112		6.7188873	0.029129	-0.00038882	-0.0016748	NaN	0	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5702.8	+		8190	12975	4739	4833							-0.17108253508547477
GQEGKVGA	8	Unmodified	_GQEGKVGA_					0	0	0			REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3838936530001	1	745.383894	744.376617	1.7173	0.00128	4.6862	0.003493	6.4035	0.0047731	745.3870735471294	25.057	0.24125	25.045	24.996	25.238	-0.012011	594	73	1.265731	0.043181658	1.2642115	258.1803	0	8.80806						276	11	3	NaN	NaN	NaN	0.75561	1	3893	3893		15.175	0	1	32288	+		8191	8424	4740	4834	6454	6454					-0.005796057505676799
GQELLAPLVV	10	Unmodified	_GQELLAPLVV_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.81332468205	2	519.813325	1037.6121	0.87099	0.00045275	7.2818	0.0037852	8.1528	0.0042379	519.8172336367217	33.576	0.2412	33.576	33.431	33.673	0	1215	49	0.8891654	0.029435158	0.8891654	360.87485	0	11.946503						153	11	2	NaN	NaN	NaN	0.77928	1	10113	10113		0.69115	0.093923	1	15869	+		8192	9929	4741	4835	6455	6455					0.09479486654186076
GQELLAPLVV	10	Unmodified						0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	519.813325	1037.6121	0.87099	0.00045275	7.2818	0.0037852	8.1528	0.0042379	519.8172336367217	33.576	0.2412	33.576	33.431	33.673	0	1215	49	0.8891654	0.029435158	0.8891654	360.87485		11.946503	-0.15558	-0.00048262	-0.00015998	NaN	0.69115	153	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15869	+		8193	9929	4741	4835							0.09479486654186076
GQELLAPLVV	10	Unmodified						0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.813325	1037.6121	1.389	0.000722	8.8324	0.0045912	10.221	0.0053132	519.8186526182885	33.889	0.04821	33.887	33.863	33.911	-0.0012474	1212	28	0.8910048	0.016552806	0.88948536	361.62137		6.718109	0.15558	0.0011294	0.00015998	NaN	0.69115	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3788.1	+		8194	9929	4741	4835							0.09479486654186076
GQFCQLCSRRY	11	Unmodified	_GQFCQLCSRRY_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.2131462297	3	454.213146	1359.61761	1.1083	0.0005034	8.3617	0.003798	9.47	0.0043014	454.2168153389698	19.276	0.072037	19.276	19.252	19.324	0	1419	64	0.76361835	0.038916945	0.76361835	463.43286	0	23.618317						79	4	2	NaN	NaN	NaN	0.77883	1	19673	19673		0.10152	0	1	5683.2			8195	2789	4742	4836	6456	6456					-0.04781481097302276
GQFSMSCWV	9	Unmodified	_GQFSMSCWV_					0	0	0		SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|57|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7175127721	2	522.717513	1043.42047	1.6684	0.00087208	-4.2318	-0.002212	-2.5635	-0.00134	522.7155750946424	25.322	0.0965	25.322	25.298	25.395	0	1320	55	0.824661	0.033247292	0.824661	334.67087	0	13.492706						122	5	3	NaN	NaN	NaN	0.61413	1	10341	10341		4.9097	0	1	11218			8196	13703	4743	4837	6457	6457					-0.09950080640101078
GQGGSGGF	8	Unmodified	_GQGGSGGF_					0	0	0		CON__P02535-1	CON__P02535-1	CON__P02535-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.2841796084	1	666.28418	665.276903	1.8626	0.001241	4.9825	0.0033198	6.8451	0.0045608	666.288669763183	27.373	0.048262	27.363	27.315	27.363	-0.010126	1086	58	0.9680805	0.034813106	0.9665611	197.89047	0	7.1163177						57	3	2	NaN	NaN	NaN	0.84455	1	2365	2365		2.7852	1.5433	1	4332.9		+	8197	188	4744	4838	6458	6458					-0.06912423364519782
GQGPLGSN	8	Unmodified	_GQGPLGSN_					0	0	0		ENST00000425528.5_3_19:12811732-12811897:-|nuORF	ENST00000425528.5_3_19:12811732-12811897:-|nuORF	ENST00000425528.5_3_19:12811732-12811897:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3525935246	1	729.352594	728.345317	0.9819	0.00071615	6.1087	0.0044554	7.0906	0.0051715	729.357408579938	40.991	0.072063	40.998	40.95	41.022	0.0074921	687	82	1.2098682	0.04870677	1.2083488	246.88376	0	9.939026						155	4	2	NaN	NaN	NaN	0.84512	1	3663	3663		2.4615	0.79115	1	12681			8198	6940	4745	4839	6459	6459					-0.029721787846710868
GQGSSLSI	8	Unmodified	_GQGSSLSI_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.3835593020002	1	748.383559	747.376283	1.6414	0.0012284	4.9207	0.0036826	6.5621	0.004911	748.3878906658996	28.725	0.31373	28.716	28.668	28.982	-0.0083504	567	121	1.2819146	0.07195413	1.2803952	261.4624	0	14.675919						681	14	4	NaN	NaN	NaN	0.6053	1	3925	3925		24.961	1.6266	1	187850			8199	5452	4746	4840	6460	6460					-0.007510254704129693
GQHLEESVI	9	Unmodified	_GQHLEESVI_					0	0	0		nc|ENSG00000181513|Q8NC06|ACBD4;ENST00000585553.5_1_17:43213984-43221005:+|nuORF;nc|ENSG00000181513|Q8NC06-3|ACBD4	nc|ENSG00000181513|Q8NC06|ACBD4	nc|ENSG00000181513|Q8NC06|ACBD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.5105507296001	1	1011.51055	1010.50327	1.6822	0.0017016	-11.478	-0.01161	-9.796	-0.0099087	1011.4979005960125	28.774	0.048265	28.774	28.774	28.822	0	291	91	1.446459	0.05334258	1.446459	293.63556	0	10.828705						79	3	2	NaN	NaN	NaN	0.60736	1	8997	8997		5.1889	1.6157	1	5446.8			8200	7694	4747	4841	6461	6461					-0.0015572431608461557
GQLLVQSYLE	10	Unmodified	_GQLLVQSYLE_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.8765229114333	3	383.876523	1148.60774	1.2972	0.00049797	5.9903	0.0022995	7.2875	0.0027975	383.8788276566081	14.38	0.14372	14.369	14.345	14.489	-0.011219	1452	49	0.74322224	0.029678345	0.7417028	451.8863	0	18.044739						109	7	2	NaN	NaN	NaN	0.73444	1	14266	14266		2.7042	0	1	18241	+		8201	9721	4748	4842	6462	6462					0.03937977440614304
GQLSAFYLF	9	Unmodified	_GQLSAFYLF_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1;ENST00000521049.5_1_8:71499819-71512292:-|nuORF	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5353089170999	1	1045.53531	1044.52803	1.3168	0.0013767	1.2037	0.0012585	2.5205	0.0026353	1045.53600235379	34.612	0.12057	34.612	34.563	34.684	-0.00064468	96	79	1.5617468	0.045975924	1.5602274	316.9002	0	9.329163						226	6	3	NaN	NaN	NaN	0.10363	1	10192	10192		35.296	0.85769	1	30400			8202	713	4749	4843	6463	6463					0.007549555572722966
GQNGSDSAMRS	11	Unmodified	_GQNGSDSAMRS_					0	0	0			REV__ENST00000530384.5_1_11:66360639-66366729:+|nuORF	REV__ENST00000530384.5_1_11:66360639-66366729:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.4928547252333	3	370.492855	1108.45673	1.5318	0.00056753	0.87558	0.0003244	2.4074	0.00089192	370.82706809023955	34.686	0.048302	34.686	34.662	34.71	0	1515	31	0.7042165	0.018597364	0.7042165	428.35406	0	11.312225						74	3	3	NaN	NaN	NaN	0.75376	1	13201	13201		1.5256	0.15593	1	4714.2	+		8203	12646	4750	4844	6464	6464					-0.09315532209689081
GQPATHGQ	8	Unmodified	_GQPATHGQ_					0	0	0		ENST00000510043.1_1_3:131188591-131190131:-|nuORF;ENSG00000114686|ENST00000264995|MRPL3	ENST00000510043.1_1_3:131188591-131190131:-|nuORF	ENST00000510043.1_1_3:131188591-131190131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.19083403290006	2	398.190834	794.367115	1.4795	0.0005891	-8.1699	-0.0032532	-6.6905	-0.0026641	398.18762744307287	30.945	0.3138	30.94	30.819	31.133	-0.0050716	1437	67	0.7524962	0.04079449	0.75097674	306.628	0	16.622986						448	14	2	NaN	NaN	NaN	0.84512	1	4590	4590		2.4615	0.79115	1	261400			8204	1969	4751	4845	6465	6465					-0.0382937403608139
GQPEIFYTF	9	Unmodified	_GQPEIFYTF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.5251381612998	1	1101.52514	1100.51786	1.5837	0.0017444	-4.9443	-0.0054462	-3.3606	-0.0037018	1101.5221182433665	30.487	0.21721	30.487	30.439	30.656	0	81	109	1.5705823	0.06364548	1.5705823	318.48166	0	12.906006						531	10	3	NaN	NaN	NaN	0.12866	1	12856	12856		31.675	6.7144	1	79402			8205	4330	4752	4846	6466	6466					-0.02837652167977467
GQPEIFYTF	9	Unmodified	_GQPEIFYTF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.5251381612998	1	1101.52514	1100.51786	1.4864	0.0016373	-6.3085	-0.006949	-4.8221	-0.0053116	1101.5200490596908	30.486	0.24131	30.48	30.408	30.649	-0.0057545	78	106	1.5723488	0.061867714	1.5708294	318.83987	0	12.545502						606	11	3	NaN	NaN	NaN	0.028569	1	12522	12522		60.984	26.53	1	80173			8206	4330	4752	4846	6467	6467					-0.02837652167977467
GQPNMASF	8	Unmodified	_GQPNMASF_					0	0	0			REV__PROX1|p.V368Afs*121|1|0.06|ENSG00000117707|chr1:213997638-213997638|T/-|frameshift_variant	REV__PROX1|p.V368Afs*121|1|0.06|ENSG00000117707|chr1:213997638-213997638|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.1894454369	2	426.189445	850.364338	0.77696	0.00033113	3.4012	0.0014496	4.1782	0.0017807	426.19082485540844	34.299	0.33757	34.298	34.129	34.466	-0.0012474	1422	40	0.7617651	0.024091423	0.7602457	310.0582	0	9.805847						212	15	2	NaN	NaN	NaN	0.8439	1	5256	5256		3.1533	0	1	27822	+		8207	9253	4753	4847	6468	6468					-0.06682965485265413
GQPNMASF	8	Unmodified						0	0	0			REV__PROX1|p.V368Afs*121|1|0.06|ENSG00000117707|chr1:213997638-213997638|T/-|frameshift_variant	REV__PROX1|p.V368Afs*121|1|0.06|ENSG00000117707|chr1:213997638-213997638|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	426.189445	850.364338	0.77696	0.00033113	3.4012	0.0014496	4.1782	0.0017807	426.19082485540844	34.299	0.33757	34.298	34.129	34.466	-0.0012474	1422	40	0.7617651	0.024091423	0.7602457	310.0582		9.805847	0.17978	-2.8186E-05	-0.00075972	NaN	3.1533	212	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27822	+		8208	9253	4753	4847							-0.06682965485265413
GQSAGCHA	8	Unmodified	_GQSAGCHA_					0	0	0			REV__ENST00000399173.5_1_1:27952575-27952749:-|nuORF	REV__ENST00000399173.5_1_1:27952575-27952749:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.65048745189995	2	365.650487	729.286422	2.3238	0.00084969	-9.0205	-0.0032983	-6.6967	-0.0024487	365.6475625652091	25.322	0.14473	25.31	25.262	25.407	-0.012011	1524	43	0.698637	0.026039124	0.69711757	285.1115	0	10.626495						79	7	2	NaN	NaN	NaN	0.84692	1	3670	3670		1.4396	0	1	5634.8	+		8209	12028	4754	4848	6469	6469					-0.08904978350653892
GQTLNELL	8	Unmodified	_GQTLNELL_					0	0	0			REV__nc|ENSG00000143669|Q99698-3|LYST	REV__nc|ENSG00000143669|Q99698-3|LYST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.24527490660006	2	444.245275	886.475997	0.6846	0.00030413	-1.1915	-0.00052932	-0.5069	-0.00022519	444.24476285327233	35.529	0.2894	35.529	35.481	35.77	0.00053024	1416	67	0.76547134	0.040767908	0.7639519	311.3652	0	16.582855						355	13	2	NaN	NaN	NaN	0.81251	1	5773	5773		7.5404	0	1	173210	+		8210	9876	4755	4849	6470	6470					0.028217921435384596
GQVGPPVV	8	Unmodified	_GQVGPPVV_					0	0	0			REV__chr1:946545-948490|107|11.82|0.29|5.37|-|2|NOC2L,NOC2L|1	REV__chr1:946545-948490|107|11.82|0.29|5.37|-|2|NOC2L,NOC2L|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.71869601534996	2	376.718696	751.422839	2.0153	0.00075918	-10.181	-0.0038354	-8.1658	-0.0030762	376.71602556276815	23.537	0.024086	23.524	23.5	23.524	-0.01305	1443	67	0.7487872	0.04078561	0.7472678	305.412	0	16.635468						65	2	2	NaN	NaN	NaN	0.84692	1	4009	4009		1.4396	0	1	11673	+		8211	8206	4756	4850	6471	6471					0.03718459151514253
GQVSSPAP	8	Unmodified	_GQVSSPAP_					0	0	0			REV__nc|ENSG00000128886|Q9HB65-2|ELL3	REV__nc|ENSG00000128886|Q9HB65-2|ELL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3729946157	1	742.372995	741.365718	1.2424	0.0009223	4.8856	0.003627	6.128	0.0045493	742.3766330728938	26.819	0.12065	26.819	26.795	26.915	0	585	52	1.2711272	0.030575633	1.2711272	259.30005	0	6.2371674						133	6	2	NaN	NaN	NaN	0.84207	1	3937	3937		3.5732	0	1	13271	+		8212	9456	4757	4851	6472	6472					-0.015310081248571805
GRAEGQGG	8	Unmodified	_GRAEGQGG_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.1751839687	2	366.175184	730.335815	1.7737	0.00064948	7.2042	0.002638	8.9779	0.0032875	366.1776173371584	53.828	0.072319	53.828	53.779	53.852	0	1470	34	0.7320868	0.020420492	0.7320868	298.75427	0	8.333313						57	4	2	NaN	NaN	NaN	0.84562	1	3756	3756		2.1763	0	1	3993.2			8213	5135	4758	4852	6473	6473					-0.04013947070188806
GRAGAGPS	8	Unmodified	_GRAGAGPS_					0	0	0		nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	nc|ENSG00000055118|Q12809-2|KCNH2	nc|ENSG00000055118|Q12809-2|KCNH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3423631893	1	672.342363	671.335087	1.0404	0.00069949	-2.3934	-0.0016092	-1.3531	-0.00090972	672.3415749031399	30.124	0.096535	30.118	30.094	30.19	-0.0064106	666	52	1.2224985	0.030663848	1.2209791	249.85202	0	6.267044						88	5	2	NaN	NaN	NaN	0.84727	1	2546	2546		1.2418	0	1	6791.3			8214	598	4759	4853	6474	6474					-0.013727417192399116
GRATGKGF	8	Unmodified	_GRATGKGF_					0	0	0		nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1;C18orf8-PSPC1|1|fusion	nc|ENSG00000121390|Q8WXF1-2|PSPC1	nc|ENSG00000121390|Q8WXF1-2|PSPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.4315125476002	1	793.431513	792.424236	-0.19466	-0.00015445	5.5605	0.0044119	5.3658	0.0042574	793.4354835094732	56.011	0.12005	56.01	55.986	56.106	-0.00059128	531	55	1.3034686	0.03231013	1.3019491	265.58612	0	6.5833435						118	6	2	NaN	NaN	NaN	0.84782	1	4574	4574		0.92586	0	1	16539			8215	2294	4760	4854	6475	6475					0.01972093240283357
GRDEGKGG	8	Unmodified	_GRDEGKGG_					0	0	0			REV__ENST00000586312.5_1_17:40985593-40986223:+|nuORF	REV__ENST00000586312.5_1_17:40985593-40986223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.3693062213002	1	775.369306	774.36203	1.2523	0.000971	-3.8811	-0.0030093	-2.6288	-0.0020383	775.3657490723386	29.907	0.16891	29.9	29.876	30.045	-0.0070667	516	70	1.3124412	0.04127419	1.3109218	267.52057	0	8.413116						225	8	3	NaN	NaN	NaN	0.81756	1	4342	4342		6.8632	0.069206	1	25740	+		8216	12887	4761	4855	6476	6476					-0.03417677898698912
GRDEGKGG	8	Unmodified						0	0	0			REV__ENST00000586312.5_1_17:40985593-40986223:+|nuORF	REV__ENST00000586312.5_1_17:40985593-40986223:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.369306	774.36203	1.2523	0.000971	-3.8811	-0.0030093	-2.6288	-0.0020383	775.3657490723386	29.907	0.16891	29.9	29.876	30.045	-0.0070667	516	70	1.3124412	0.04127419	1.3109218	267.52057		8.413116	-0.0039928	0.00012989	0.00013736	NaN	6.8632	225	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25740	+		8217	12887	4761	4855							-0.03417677898698912
GRDKDVDKI	9	Unmodified	_GRDKDVDKI_					0	0	0			REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	REV__tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5636489326	1	1045.56365	1044.55637	2.2599	0.0023628	-6.709	-0.0070147	-4.4491	-0.0046518	1045.556446851716	26.288	0.096571	26.288	26.263	26.36	0	150	49	1.5299006	0.028334856	1.5299006	310.43808	0	5.7495117						89	5	2	NaN	NaN	NaN	0.63698	1	10408	10408		3.9685	0	1	7899.2	+		8218	13564	4762	4856	6477	6477					0.03587653466570373
GRDYFCNRSA	10	Unmodified	_GRDYFCNRSA_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7643715042501	2	594.764372	1187.51419	0.71435	0.00042487	5.0878	0.003026	5.8021	0.0034509	594.7674791281457	28.266	0.14483	28.257	28.185	28.33	-0.0089779	1161	97	0.9222442	0.05879408	0.92072475	373.68082	0	23.82257						240	7	3	NaN	NaN	NaN	0.64611	1	15457	15457		11.739	0.19041	1	25191			8219	4817	4763	4857	6478	6478					-0.07206645213454976
GRETESLPI	9	Unmodified	_GRETESLPI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5262007938001	1	1001.5262	1000.51892	1.3296	0.0013316	0.35679	0.00035734	1.6863	0.0016889	1001.528233382648	27.928	0.16896	27.919	27.846	28.015	-0.009552	210	160	1.4944444	0.09415352	1.4929249	303.41742	0	19.116028						342	8	2	NaN	NaN	NaN	0.18779	1	8448	8448		26.115	5.5595	1	55248	+		8220	10671	4764	4858	6479	6479					0.01868562200957058
GRGGGGGD	8	Unmodified	_GRGGGGGD_					0	0	0		ENST00000464954.1_1_1:167691199-167735064:+|nuORF;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;ENSG00000177283|ENST00000374694|FZD8	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	ENST00000464954.1_1_1:167691199-167735064:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2746775546	1	632.274678	631.267401	1.813	0.0011463	-5.0356	-0.0031839	-3.2226	-0.0020375	632.2743097270529	55.196	0.072216	55.196	55.148	55.22	0	783	46	1.1520087	0.027172565	1.1520087	235.74365	0	5.5605164						68	4	2	NaN	NaN	NaN	0.84945	1	1502	1502		0	0	1	4093.8			8221	5070	4765	4859	6480	6480					-0.06298191650057561
GRGGKGAG	8	Unmodified	_GRGGKGAG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.432	0.00094419	0.11067	7.2973E-05	1.5426	0.0010172	659.3572094008102	26.722	0.19356	26.722	26.674	26.867	0	768	157	1.1610622	0.09409237	1.1610622	237.38922	0	19.238007						712	9	3	NaN	NaN	NaN	0.84727	1	2265	2265		1.2418	0	1	71332			8222	6896	4766	4860	6481	6481					0.0082296451765842
GRGGKGAG	8	Unmodified						0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.1548	0.00076144	-1.6358	-0.0010786	-0.48094	-0.00031711	659.3573731532207	26.987	0.072407	26.977	26.929	27.001	-0.010126	756	130	1.1683017	0.077803016	1.1667823	238.86938		15.907486	0.12751	-0.00064719	0.00286	NaN	1.2418	267	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18803			8223	6896	4766	4860							0.0082296451765842
GRGGPHTGG	9	Unmodified	_GRGGPHTGG_					0	0	0			REV__ENST00000496700.5_1_14:105954396-105954633:+|nuORF	REV__ENST00000496700.5_1_14:105954396-105954633:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3856249875001	1	795.385625	794.378349	1.6978	0.0013504	2.9151	0.0023187	4.6129	0.0036691	795.3883248344382	27.326	0.19311	27.326	27.302	27.495	0	411	61	1.3751161	0.035747528	1.3751161	280.17282	0	7.283386						248	9	3	NaN	NaN	NaN	0.66822	1	4681	4681		1.9246	0.25428	1	32748	+		8224	12502	4767	4861	6482	6482					-0.027065519419466
GRGGPHTGG	9	Unmodified						0	0	0			REV__ENST00000496700.5_1_14:105954396-105954633:+|nuORF	REV__ENST00000496700.5_1_14:105954396-105954633:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.385625	794.378349	1.6978	0.0013504	2.9151	0.0023187	4.6129	0.0036691	795.3883248344382	27.326	0.19311	27.326	27.302	27.495	0	411	61	1.3751161	0.035747528	1.3751161	280.17282		7.283386	-0.0066356	-0.00034733	-0.00013392	NaN	1.9246	248	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32748	+		8225	12502	4767	4861							-0.027065519419466
GRGHSPYAQP	10	Unmodified	_GRGHSPYAQP_					0	0	0			REV__ENST00000552318.5_1_12:111052034-111064296:+|nuORF	REV__ENST00000552318.5_1_12:111052034-111064296:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2623219543001	2	535.262322	1068.51009	1.6838	0.00090127	-7.5337	-0.0040325	-5.8499	-0.0031312	535.2580010121507	21.2	0.24089	21.2	21.103	21.344	0	1269	55	0.8560222	0.033179045	0.8560222	347.2919	0	13.460876						194	11	3	NaN	NaN	NaN	0.65442	1	11483	11483		11.17	0.56537	1	20241	+		8226	12719	4768	4862	6483	6483					-0.021423666448527
GRGNAGGL	8	Unmodified	_GRGNAGGL_					0	0	0		ENST00000526562.5_1_11:8704757-8706293:+|nuORF;ENSG00000166441|ENST00000314138|RPL27A	ENST00000526562.5_1_11:8704757-8706293:+|nuORF	ENST00000526562.5_1_11:8704757-8706293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3689122908	1	701.368912	700.361636	1.0104	0.00070869	-9.8014	-0.0068744	-8.791	-0.0061657	701.3619558697884	22.717	0.16867	22.704	22.68	22.848	-0.01354	639	52	1.2387238	0.030634403	1.2372043	252.9585	0	6.255829						136	8	2	NaN	NaN	NaN	0.80692	1	3165	3165		8.2903	0.70005	1	14007			8227	4479	4769	4863	6484	6484					-0.0005305282791141508
GRHEELILV	9	Unmodified	_GRHEELILV_					0	0	0		ENSG00000187808|ENST00000343905|SOWAHD	ENSG00000187808|ENST00000343905|SOWAHD	ENSG00000187808|ENST00000343905|SOWAHD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3061981417001	2	533.306198	1064.59784	1.8488	0.00098598	3.7552	0.0020027	5.604	0.0029886	533.3087268695905	23.899	0.072319	23.899	23.851	23.923	0	1233	76	0.87812483	0.046029747	0.87812483	356.27563	0	18.675323						158	4	4	NaN	NaN	NaN	0.23112	1	11346	11346		23.334	0	1	24929			8228	5523	4770	4864	6485	6485					0.06812834225888764
GRIQPLTKN	9	Unmodified	_GRIQPLTKN_					0	0	0			REV__ENST00000484413.5_1_1:153603576-153604627:-|nuORF	REV__ENST00000484413.5_1_1:153603576-153604627:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.8063653172001	2	513.806365	1025.59818	2.0174	0.0010365	-2.7107	-0.0013928	-0.69335	-0.00035625	513.8047008394027	20.021	0.072111	20.021	19.997	20.069	0	1281	34	0.84864825	0.020283759	0.84864825	344.48352	0	8.233612						81	4	3	NaN	NaN	NaN	0.51576	1	9609	9609		8.962	0.67169	1	9974.7	+		8229	12410	4771	4865	6486	6486					0.08640253945759468
GRKGPVGG	8	Unmodified	_GRKGPVGG_					0	0	0		ENST00000372663.8_1_9:131483181-131483412:-|nuORF	ENST00000372663.8_1_9:131483181-131483412:-|nuORF	ENST00000372663.8_1_9:131483181-131483412:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4209478613002	1	727.420948	726.413671	-0.43509	-0.00031649	7.9347	0.0057719	7.4996	0.0054554	727.4264510599849	55.747	0.12038	55.746	55.722	55.842	-0.00059128	603	70	1.2603331	0.041380167	1.2588136	257.19415	0	8.444366						164	6	3	NaN	NaN	NaN	0.84887	1	3629	3629		0.32989	0	1	33549			8230	6663	4772	4866	6487	6487					0.03952110585862556
GRLFSYMK	8	Unmodified	_GRLFSYMK_					0	0	0			REV__nc|ENSG00000106025|O95859-2|TSPAN12	REV__nc|ENSG00000106025|O95859-2|TSPAN12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5236983733001	1	1001.5237	1000.51642	1.3859	0.001388	-2.5953	-0.0025993	-1.2094	-0.0012113	1001.521733143352	32.104	0.096519	32.104	32.032	32.128	0	228	67	1.4837929	0.03905976	1.4837929	301.25485	0	7.9303284						138	5	2	NaN	NaN	NaN	0.76406	1	8613	8613		14.042	0	1	16557	+		8231	8981	4773	4867	6488	6488					0.016184352622985898
GRQGPEGP	8	Unmodified	_GRQGPEGP_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.19865906499996	2	399.198659	796.382765	1.0277	0.00041024	-7.8521	-0.0031346	-6.8245	-0.0027243	399.1958027647142	32.875	0.096516	32.872	32.824	32.92	-0.0031052	1404	34	0.77288127	0.020371795	0.7713618	314.92102	0	8.300781						81	5	2	NaN	NaN	NaN	0.84512	1	4616	4616		2.4615	0	1	11273			8232	5241	4774	4868	6489	6489					-0.023570875190557672
GRQGPEGP	8	Unmodified						0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.198659	796.382765	0.87801	0.0003505	-9.1605	-0.0036569	-8.2825	-0.0033064	399.1952764376764	33.045	0.28962	33.045	32.78	33.069	0	1404	46	0.77288127	0.027779698	0.77288127	314.92102		11.319244	0.086587	-0.00029754	0.00075972	NaN	2.4615	307	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79767			8233	5241	4774	4868							-0.023570875190557672
GRQLIMEPHQ	10	Unmodified	_GRQLIMEPHQ_					0	0	0			REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF	REV__ENST00000445028.1_1_X:43137608-43138196:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8138643858	2	604.813864	1207.61318	1.1422	0.00069083	-6.759	-0.0040879	-5.6168	-0.0033971	605.3117170593652	20.405	0.0721	20.405	20.405	20.477	0	1167	55	0.91857195	0.033064544	0.91857195	372.12177	0	13.394745						100	4	2	NaN	NaN	NaN	0.70677	1	16672	16672		7.5876	0	1	7822.5	+		8234	12205	4775	4869	6490	6490					0.01767377751434651
GRQPEWAK	8	Unmodified	_GRQPEWAK_					0	0	0		ENST00000544450.6_1_14:100605290-100605623:+|nuORF	ENST00000544450.6_1_14:100605290-100605623:+|nuORF	ENST00000544450.6_1_14:100605290-100605623:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.25650829489996	2	486.256508	970.498464	2.095	0.0010187	-8.2355	-0.0040046	-6.1405	-0.0029858	486.2513670312066	20.429	0.14452	20.415	20.343	20.487	-0.014141	1524	31	0.698637	0.018601418	0.69711757	283.80405	0	7.5563354						58	7	2	NaN	NaN	NaN	0.78967	1	7473	7473		10.605	1.4818	1	3649.3			8235	7513	4776	4870	6491	6491					0.012034363317866337
GRQPEWAK	8	Unmodified						0	0	0		ENST00000544450.6_1_14:100605290-100605623:+|nuORF	ENST00000544450.6_1_14:100605290-100605623:+|nuORF	ENST00000544450.6_1_14:100605290-100605623:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.256508	970.498464	1.8035	0.00087695	-13.876	-0.0067472	-12.072	-0.0058702	486.2495048936996	20.285	0.048071	20.285	20.261	20.309	0	1524	34	0.698637	0.020462632	0.698637	283.80405		8.312439	-0.065106	-0.0022002	0.00075972	NaN	10.605	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3569.3			8236	7513	4776	4870							0.012034363317866337
GRQPGGGG	8	Unmodified	_GRQPGGGG_					0	0	0		ENST00000463734.1_1_20:25204590-25206148:+|nuORF	ENST00000463734.1_1_20:25204590-25206148:+|nuORF	ENST00000463734.1_1_20:25204590-25206148:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.17244431450007	2	343.172444	684.330336	1.5144	0.00051969	2.34	0.00080302	3.8543	0.0013227	343.17255216125915	36.012	0.096439	36.012	35.964	36.061	0	1503	43	0.711653	0.026027799	0.711653	290.77396	0	10.634705						62	5	2	NaN	NaN	NaN	0.84887	1	2930	2930		0.32989	0	1	4261.6			8237	7092	4777	4871	6492	6492					-0.024456258619920845
GRRLDYDYKKK	11	Unmodified	_GRRLDYDYKKK_					0	0	0		nc|ENSG00000140600|Q99963-2|SH3GL3;nc|ENSG00000140600|Q99963-4|SH3GL3;ENSG00000140600|ENST00000427482|SH3GL3;nc|ENSG00000140600|Q99963-3|SH3GL3	nc|ENSG00000140600|Q99963-2|SH3GL3	nc|ENSG00000140600|Q99963-2|SH3GL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3991497866999	2	721.39915	1440.78375	1.6093	0.001161	-7.6815	-0.0055415	-6.0722	-0.0043805	721.3934274578603	23.417	0.072365	23.417	23.393	23.465	0	1050	31	0.9900381	0.018286169	0.9900381	400.33914	0	7.3943176						79	4	3	NaN	NaN	NaN	0.76937	1	20329	20329		2.1026	0.40037	1	7980.2			8238	3282	4778	4872	6493	6493					0.08098611674517997
GRRLDYDYKKK	11	Unmodified						0	0	0		nc|ENSG00000140600|Q99963-2|SH3GL3;nc|ENSG00000140600|Q99963-4|SH3GL3;ENSG00000140600|ENST00000427482|SH3GL3;nc|ENSG00000140600|Q99963-3|SH3GL3	nc|ENSG00000140600|Q99963-2|SH3GL3	nc|ENSG00000140600|Q99963-2|SH3GL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	721.39915	1440.78375	1.9641	0.0014169	-9.1427	-0.0065955	-7.1786	-0.0051786	721.3924613772641	23.441	0.048275	23.427	23.403	23.451	-0.013294	1050	34	0.9900381	0.020113647	0.9885187	400.33914		8.133331	0.0052149	-0.00072042	-0.00075972	NaN	2.1026	74	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7259			8239	3282	4778	4872							0.08098611674517997
GRRYEQAD	8	Unmodified	_GRRYEQAD_					0	0	0			REV__ENSG00000090512|ENST00000265029|FETUB	REV__ENSG00000090512|ENST00000265029|FETUB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.4700828983999	1	994.470083	993.462806	1.8196	0.0018095	-6.085	-0.0060513	-4.2654	-0.0042418	994.4646295377272	22.958	0.048267	22.945	22.896	22.945	-0.01354	303	64	1.4393384	0.037377477	1.437819	292.25748	0	7.5894775						87	3	2	NaN	NaN	NaN	0.82212	1	8166	8166		6.2502	0.55606	1	10376	+		8240	8229	4779	4873	6494	6494					-0.03418645915871821
GRSGAKAP	8	Unmodified	_GRSGAKAP_					0	0	0			REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF	REV__ENST00000464624.6_1_20:57428320-57466719:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.4158624834	1	743.415862	742.408586	2.0085	0.0014931	-6.162	-0.0045809	-4.1536	-0.0030878	743.4110490171759	37.72	0.072086	37.723	37.699	37.771	0.0028229	564	43	1.2837118	0.025159717	1.2821923	261.86057	0	5.1322327						54	4	2	NaN	NaN	NaN	0.83211	1	3874	3874		4.9097	0.49665	1	3941	+		8241	12286	4780	4874	6495	6495					0.027078067232309877
GRSNFYLVW	9	Unmodified	_GRSNFYLVW_					0	0	0			REV__GSAP|p.H664Y|1|0.38|ENSG00000186088|chr7:77321337-77321337|G/A|missense_variant	REV__GSAP|p.H664Y|1|0.38|ENSG00000186088|chr7:77321337-77321337|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2930907664501	2	571.293091	1140.57163	2.327	0.0013294	-11.357	-0.006488	-9.0298	-0.0051587	571.2870738238962	22.693	0.024137	22.68	22.68	22.704	-0.01354	1239	31	0.87444305	0.018408895	0.8729236	354.47995	0	7.4625854						32	2	2	NaN	NaN	NaN	0.58159	1	14000	14000		6.2502	0.55606	1	2069.2	+		8242	13004	4781	4875	6496	6496					0.0069656505440889305
GRVSARFGGS	10	Unmodified	_GRVSARFGGS_					0	0	0		SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant;ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant	SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.26486464325006	2	497.264865	992.515176	1.3927	0.00069255	2.5004	0.0012434	3.8931	0.0019359	497.26592101596333	17.474	0.168	17.46	17.34	17.508	-0.013567	1536	127	0.69119483	0.07809204	0.6896754	280.69376	0	31.713104						251	8	2	NaN	NaN	NaN	0.77024	1	8154	8154		2.8895	0.29002	1	19199			8243	4182	4782	4876	6497	6497					0.018619372177681726
GRVSARFGGS	10	Unmodified						0	0	0		SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant;ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant	SNED1|p.R1253T|1|0.21|ENSG00000162804|chr2:241071819-241071819|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.264865	992.515176	1.8932	0.00094144	1.6859	0.00083834	3.5791	0.0017798	497.26585437145513	17.165	0.14397	17.165	17.141	17.285	0	1539	142	0.68933374	0.08737451	0.68933374	279.938		35.482727	-0.14745	-0.00026283	-0.00017081	NaN	2.8895	345	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33856			8244	4182	4782	4876							0.018619372177681726
GSAGAGAH	8	Unmodified	_GSAGAGAH_					0	0	0		ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2845139594001	1	627.284514	626.277237	0.96199	0.00060344	0.81145	0.00050901	1.7734	0.0011125	627.2864353842405	27.904	0.072384	27.895	27.87	27.943	-0.009552	1155	49	0.92591566	0.02936846	0.9243962	189.50859	0	6.010895						80	4	2	NaN	NaN	NaN	0.84876	1	1198	1198		0.39566	0	1	8514.8			8245	5907	4783	4877	6498	6498					-0.05085003644660446
GSAGDSLE	8	Unmodified	_GSAGDSLE_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3155393163001	1	735.315539	734.308263	1.8709	0.0013757	-4.3338	-0.0031867	-2.4628	-0.001811	735.3129004488819	25.877	0.33787	25.877	25.829	26.167	0	636	49	1.2405256	0.028827667	1.2405256	253.10173	0	5.8816833						199	15	2	NaN	NaN	NaN	0.84455	1	3815	3815		2.7852	0	1	14193	+		8246	10387	4784	4878	6499	6499					-0.06951895121073903
GSAGGGVQ	8	Unmodified	_GSAGGGVQ_					0	0	0			REV__ENST00000500074.2_1_3:129824416-129830240:-|nuORF	REV__ENST00000500074.2_1_3:129824416-129830240:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2998296726	1	632.29983	631.292553	1.4486	0.00091593	-5.4628	-0.0034541	-4.0142	-0.0025382	632.2964167899574	36.591	0.16873	36.591	36.543	36.712	0	678	64	1.2152823	0.037907362	1.2152823	248.69159	0	7.757248						133	8	2	NaN	NaN	NaN	0.84727	1	1503	1503		1.2418	0	1	10975	+		8247	12515	4785	4879	6500	6500					-0.03784136847480113
GSAPSLVVQEP	11	Unmodified	_GSAPSLVVQEP_					0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.28767103755	2	542.287671	1082.56079	1.9607	0.0010633	-6.4411	-0.0034929	-4.4803	-0.0024296	542.2839072586358	25.564	0.21711	25.564	25.515	25.732	0	1500	40	0.71351165	0.024159491	0.71351165	289.42694	0	9.799988						207	10	3	NaN	NaN	NaN	0.77378	1	12101	12101		1.3312	0.25915	1	26984	+		8248	11755	4786	4880	6501	6501					0.02281117889469897
GSAPSLVVQEP	11	Unmodified						0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.287671	1082.56079	1.9607	0.0010633	-6.4411	-0.0034929	-4.4803	-0.0024296	542.2839072586358	25.564	0.21711	25.564	25.515	25.732	0	1500	40	0.71351165	0.024159491	0.71351165	289.42694		9.799988	-0.12677	0.00069506	0.00075972	NaN	1.3312	207	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26984	+		8249	11755	4786	4880							0.02281117889469897
GSAPSLVVQEP	11	Unmodified						0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.287671	1082.56079	2.0925	0.0011347	-7.5313	-0.0040841	-5.4388	-0.0029494	542.2834777851747	25.829	0.16895	25.817	25.721	25.89	-0.011602	1500	37	0.71351165	0.02230227	0.7119922	289.42694		9.046661	0.12677	-0.00048737	-0.00075972	NaN	1.3312	130	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14429	+		8250	11755	4786	4880							0.02281117889469897
GSASSLIC	8	Unmodified	_GSASSLIC_					0	0	0		ENST00000392845.7_1_3:155571713-155572157:-|nuORF	ENST00000392845.7_1_3:155571713-155572157:-|nuORF	ENST00000392845.7_1_3:155571713-155572157:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3498163326001	1	737.349816	736.34254	1.2582	0.0009277	0.10738	7.9179E-05	1.3655	0.0010069	737.3497662440396	32.513	0.2413	32.51	32.438	32.679	-0.0031052	576	148	1.2765218	0.08815789	1.2750024	260.43277	0	17.985764						549	11	4	NaN	NaN	NaN	0.69631	1	3770	3770		19.285	1.5044	1	116030			8251	6761	4787	4881	6502	6502					-0.03617770233825013
GSAVSMAVL	9	Unmodified	_GSAVSMAVL_					0	0	0		ENST00000311268.7_1_12:6930911-6932688:+|nuORF	ENST00000311268.7_1_12:6930911-6932688:+|nuORF	ENST00000311268.7_1_12:6930911-6932688:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	834.4389656909001	1	834.438966	833.431689	1.8622	0.0015539	0.60203	0.00050236	2.4642	0.0020562	834.4394328848698	22.187	0.12059	22.187	22.163	22.284	0	459	49	1.3464937	0.028646827	1.3464937	274.12268	0	5.8320007						140	6	3	NaN	NaN	NaN	0.20577	1	5177	5177		24.961	4.4056	1	12971			8252	6449	4788	4882	6503	6503					0.008310647256848824
GSCGKNSC	8	Unmodified	_GSCGKNSC_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.2810848404	1	755.281085	754.273808	2.5275	0.001909	-11.608	-0.0087671	-9.0802	-0.0068581	755.2730850240773	25.95	0.38611	25.95	25.877	26.263	0	615	202	1.2531329	0.120774746	1.2531329	255.54999	0	24.629456						1418	17	4	NaN	NaN	NaN	0.81756	1	4133	4133		6.8632	1.3974	1	438650			8253	7176	4789	4883	6504	6504					-0.11315757805198245
GSCGKNSC	8	Unmodified	_GSCGKNSC_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.2810848404	1	755.281085	754.273808	2.877	0.0021729	-11.922	-0.0090048	-9.0455	-0.0068319	755.2726858622526	25.949	0.41028	25.938	25.865	26.276	-0.0116	612	175	1.2549332	0.104489684	1.2534138	255.91711	0	21.308472						1548	18	5	NaN	NaN	NaN	0.81756	1	4053	4053		6.8632	1.9535	1	453500			8254	7176	4789	4883	6505	6505					-0.11315757805198245
GSCGNCAY	8	Unmodified	_GSCGNCAY_					0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	774.2545357388999	1	774.254536	773.247259	1.7933	0.0013885	-4.0308	-0.0031209	-2.2375	-0.0017324	774.2521901055267	58.269	0.071896	58.269	58.197	58.269	0	597	37	1.2639319	0.021590829	1.2639319	257.6392	0	4.4010468						77	4	2	NaN	NaN	NaN	0.84945	1	4401	4401		0	0	1	8422.5	+		8255	11431	4790	4884	6506	6506					-0.14843446696534102
GSCGNCAY	8	Unmodified	_GSCGNCAY_					0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.2545357388999	1	774.254536	773.247259	1.2078	0.00093516	-4.3758	-0.003388	-3.168	-0.0024528	774.252340316116	56.971	0.14392	56.97	56.826	56.97	-0.00056458	591	25	1.26753	0.014390707	1.2660105	258.37262	0	2.9334412						39	7	2	NaN	NaN	NaN	0.84945	1	4324	4324		0	0	1	1789.6	+		8256	11431	4790	4884	6507	6507					-0.14843446696534102
GSCGNCAY	8	Unmodified						0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	774.254536	773.247259	1.7933	0.0013885	-4.0308	-0.0031209	-2.2375	-0.0017324	774.2521901055267	58.269	0.071896	58.269	58.197	58.269	0	597	37	1.2639319	0.021590829	1.2639319	257.6392		4.4010468	0.15736	-0.00048678	-0.0010393	NaN	0	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8422.5	+		8257	11431	4790	4884							-0.14843446696534102
GSCGNCAY	8	Unmodified						0	0	0			REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	REV__nc|ENSG00000278570|Q9Y5X4-2|NR2E3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	774.254536	773.247259	0.072599	5.621E-05	-2.9655	-0.0022961	-2.8929	-0.0022399	774.2537123274069	57.955	0.12017	57.954	57.906	58.026	-0.00050735	591	40	1.26753	0.023383737	1.2660105	258.37262		4.7665405	-0.15736	0.00033802	0.0010393	NaN	0	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6188.6	+		8258	11431	4790	4884							-0.14843446696534102
GSDPGWTL	8	Unmodified	_GSDPGWTL_					0	0	0		ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.383559302	1	832.383559	831.376283	1.0149	0.00084481	5.4512	0.0045375	6.4661	0.0053823	832.3881008129638	28.532	0.16887	28.523	28.499	28.668	-0.0083485	483	88	1.3321642	0.051958323	1.3306447	271.2163	0	10.578217						283	8	3	NaN	NaN	NaN	0.54545	1	5031	5031		28.667	10.886	1	29366			8259	7793	4791	4885	6508	6508					-0.04615025470434375
GSDPGWTL	8	Unmodified						0	0	0		ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	ENTPD1|p.A448P|1|0.69|ENSG00000138185|chr10:95866192-95866192|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.383559	831.376283	1.8288	0.0015223	4.1493	0.0034538	5.9781	0.0049761	832.386435860615	28.532	0.21719	28.532	28.508	28.725	0	486	85	1.3303722	0.050174594	1.3303722	270.85147		10.215088	0.0045422	-0.00060007	-0.0001363	NaN	28.667	297	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30843			8260	7793	4791	4885							-0.04615025470434375
GSDQHPGG	8	Unmodified	_GSDQHPGG_					0	0	0			REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3114569914002	1	754.311457	753.304181	1.4283	0.0010774	7.0198	0.0052951	8.4481	0.0063725	754.3162724403564	37.528	0.1205	37.53	37.482	37.603	0.0028229	690	67	1.2080631	0.039714575	1.2065437	246.36452	0	8.099136						140	6	3	NaN	NaN	NaN	0.84887	1	4041	4041		0.32989	0.054495	1	9653.3	+		8261	12138	4792	4886	6509	6509					-0.08233939824128811
GSDQHPGG	8	Unmodified						0	0	0			REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	754.311457	753.304181	0.87648	0.00066114	6.3069	0.0047574	7.1834	0.0054185	754.3167636533693	37.53	0.16857	37.53	37.434	37.602	0	693	67	1.2062578	0.039718866	1.2062578	245.99635		8.100006	-0.00014816	-0.00034351	-0.00014293	NaN	0.32989	176	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11399	+		8262	12138	4792	4886							-0.08233939824128811
GSDQHPGG	8	Unmodified						0	0	0			REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	REV__ENST00000427525.2_1_15:85175210-85177593:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	754.311457	753.304181	1.4283	0.0010774	7.0198	0.0052951	8.4481	0.0063725	754.3162724403564	37.528	0.1205	37.53	37.482	37.603	0.0028229	690	67	1.2080631	0.039714575	1.2065437	246.36452		8.099136	0.00014816	0.00019421	0.00014293	NaN	0.32989	140	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9653.3	+		8263	12138	4792	4886							-0.08233939824128811
GSEGTFLI	8	Unmodified	_GSEGTFLI_					0	0	0			REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	REV__MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4196104573001	1	823.41961	822.412334	1.148	0.0009453	6.8559	0.0056453	8.0039	0.0065906	823.4246911571614	52.019	0.02393	52.018	51.995	52.018	-0.000103	471	31	1.3393306	0.017910004	1.3378111	272.7236	0	3.6469727						31	2	2	NaN	NaN	NaN	0.8439	1	4933	4933		3.1533	1.7138	1	1688.1	+		8264	9914	4793	4887	6510	6510					-0.005975682935627447
GSETKAHN	8	Unmodified	_GSETKAHN_					0	0	0			REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.2013987192	2	422.201399	842.388245	1.2217	0.0005158	-11.096	-0.0046847	-9.8742	-0.0041689	422.1969661154312	31.041	0.072447	31.036	31.036	31.109	-0.0050716	1386	31	0.78399014	0.018508792	0.7824707	319.15237	0	7.5346985						59	4	2	NaN	NaN	NaN	0.84692	1	5163	5163		1.4396	0	1	5414.5	+		8265	10537	4794	4888	6511	6511					-0.0392540872724112
GSETKAHN	8	Unmodified						0	0	0			REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	422.201399	842.388245	0.95157	0.00040175	-9.2347	-0.0038989	-8.2831	-0.0034971	422.19772530953634	30.922	0.072348	30.922	30.873	30.946	0	1389	31	0.7821392	0.018510759	0.7821392	318.39886		7.5355225	-0.057276	0.0004625	-0.00016577	NaN	1.4396	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4108.4	+		8266	10537	4794	4888							-0.0392540872724112
GSETKAHN	8	Unmodified						0	0	0			REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	REV__FAM110B|p.K99_F101del|1|0.12|ENSG00000169122|chr8:58146523-58146531|TCAAAGTGT/-|inframe_deletion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	422.201399	842.388245	1.2217	0.0005158	-11.096	-0.0046847	-9.8742	-0.0041689	422.1969661154312	31.041	0.072447	31.036	31.036	31.109	-0.0050716	1386	31	0.78399014	0.018508792	0.7824707	319.15237		7.5346985	0.057276	-0.0011091	0.00016577	NaN	1.4396	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5414.5	+		8267	10537	4794	4888							-0.0392540872724112
GSFCACPP	8	Unmodified	_GSFCACPP_					0	0	0		ENSG00000241186|ENST00000296145|TDGF1	ENSG00000241186|ENST00000296145|TDGF1	ENSG00000241186|ENST00000296145|TDGF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.3007576499999	1	781.300758	780.293481	1.0222	0.00079862	0.40989	0.00032025	1.4321	0.0011189	781.3016931019499	35.023	0.12064	35.023	34.999	35.12	0	648	58	1.2333171	0.034249544	1.2333171	251.35907	0	6.9802856						232	6	3	NaN	NaN	NaN	0.84876	1	4485	4485		0.39566	0	1	24451			8268	6070	4795	4889	6512	6512					-0.105453817944408
GSFIKVNNF	9	Unmodified	_GSFIKVNNF_					0	0	0			REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	REV__tr|U7T6H4|U7T6H4_FUSNURibose-phosphatepyrophosphokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=prsPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.27436669705	2	513.274367	1024.53418	1.164	0.00059747	-1.1418	-0.00058604	0.022263	1.1427E-05	513.2733301731026	20.429	0.19258	20.415	20.391	20.584	-0.014141	1275	67	0.85233563	0.040569723	0.8508162	345.98505	0	16.468323						217	9	3	NaN	NaN	NaN	0.19268	1	9376	9376		25.801	2.4665	1	54143	+		8269	13628	4796	4890	6513	6513					0.02289473788800933
GSGACCCCC	9	Unmodified	_GSGACCCCC_					0	0	0			REV__XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	REV__XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	806.1758331867999	1	806.175833	805.168557	4.2701	0.0034425	-4.7692	-0.0038448	-0.49903	-0.00040231	806.1678018726075	8.7201	0.095824	8.7201	8.6722	8.768	0	1257	25	0.86339295	0.014736712	0.86339295	175.87184	0	3.001831						20	5	2	NaN	NaN	NaN	0.6907	1	4809	4809		0	0	1	821.25	+		8270	11275	4797	4891	6514	6514					-0.24182081589140125
GSGAGSCC	8	Unmodified	_GSGAGSCC_					0	0	0		DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2017718868999	1	641.201772	640.194495	2.4189	0.001551	-3.8799	-0.0024878	-1.4609	-0.00093676	641.1992615778008	26.094	0.53097	26.094	26.094	26.625	0	831	130	1.1230044	0.07801175	1.1230044	229.74042	0	15.959381						772	23	2	NaN	NaN	NaN	0.84945	1	1731	1731		0	0	1	104250			8271	253	4798	4892	6515	6515					-0.1399940475934045
GSGCGGDP	8	Unmodified	_GSGCGGDP_					0	0	0		ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.224615819	1	649.224616	648.217339	2.2484	0.0014597	1.3456	0.00087363	3.594	0.0023333	649.2250839184344	26.143	0.41028	26.143	25.974	26.384	0	798	118	1.1429502	0.07070184	1.1429502	233.76035	0	14.460175						793	18	3	NaN	NaN	NaN	0.84887	1	2000	2000		0.32989	0	1	91891			8272	1485	4799	4893	6516	6516					-0.12084062370217907
GSGCGGDP	8	Unmodified						0	0	0		ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	649.224616	648.217339	1.6221	0.0010531	0.34314	0.00022278	1.9653	0.0012759	649.2245031717852	26.287	0.072361	26.276	26.252	26.324	-0.011137	798	97	1.1429502	0.05801475	1.1414307	233.76035		11.865402	0.066711	-0.00053102	-0.00075972	NaN	0.32989	164	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19449			8273	1485	4799	4893							-0.12084062370217907
GSGCMGCG	8	Unmodified	_GSGCMGCG_					0	0	0		ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.1009272428	2	336.100927	670.187302	1.9392	0.00065178	6.6394	0.0022315	8.5787	0.0028833	336.10310967603294	24.188	0.072372	24.175	24.151	24.224	-0.012749	1467	52	0.7339432	0.031552076	0.7324238	300.00513	0	12.897186						85	4	2	NaN	NaN	NaN	0.84876	1	2502	2502		0.39566	0	1	6852			8274	6264	4800	4894	6517	6517					-0.16098460631405942
GSGCMGCG	8	Unmodified	_GSGCMGCG_					0	0	0		ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.1009272428	2	336.100927	670.187302	1.4787	0.00049699	7.8702	0.0026452	9.3489	0.0031422	336.1038704668469	22.308	0.12049	22.294	22.222	22.342	-0.013731	1470	109	0.7320868	0.06687784	0.73056734	299.2463	0	27.336884						252	6	3	NaN	NaN	NaN	0.84692	1	2503	2503		1.4396	0	1	30874			8275	6264	4800	4894	6518	6518					-0.16098460631405942
GSGCMGCG	8	Unmodified						0	0	0		ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	336.100927	670.187302	1.547	0.00051994	7.6975	0.0025871	9.2445	0.0031071	336.10371032747923	24.502	0.072313	24.502	24.478	24.55	0	1464	43	0.73579943	0.025991142	0.73579943	300.7639		10.624084	0.16335	0.00044754	0.0016878	NaN	0.39566	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3684.2			8276	6264	4800	4894							-0.16098460631405942
GSGGFGLI	8	Unmodified	_GSGGFGLI_					0	0	0		nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.3722663341999	1	707.372266	706.36499	1.2431	0.00087937	-10.772	-0.0076196	-9.5285	-0.0067402	707.3646131362236	25.081	0.14474	25.069	25.021	25.165	-0.012011	630	67	1.2441287	0.039642334	1.2426093	254.02083	0	8.094025						167	7	2	NaN	NaN	NaN	0.82332	1	3281	3281		6.0903	0	1	20600			8277	484	4801	4895	6519	6519					6.197226082349516E-05
GSGGSSKS	8	Unmodified	_GSGGSSKS_					0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.6562927238	2	333.656293	665.298033	1.7462	0.00058263	2.9186	0.0009738	4.6647	0.0015564	333.65844155866967	37.961	0.12019	37.964	37.916	38.036	0.0034256	1536	76	0.69119483	0.046511114	0.6896754	282.5728	0	19.014587						178	6	2	NaN	NaN	NaN	0.84897	1	2366	2366		0.27539	0	1	14727			8278	2704	4802	4896	6520	6520					-0.048004580556607834
GSGGSSKS	8	Unmodified	_GSGGSSKS_					0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.305308981	1	666.305309	665.298033	1.7485	0.001165	4.455	0.0029684	6.2035	0.0041334	666.3081031207925	22.621	0.072355	22.607	22.583	22.655	-0.01354	780	46	1.1538198	0.027169585	1.1523004	235.85828	0	5.553879						80	4	2	NaN	NaN	NaN	0.84887	1	2370	2370		0.32989	0	1	8033.3			8279	2704	4802	4896	6521	6521					-0.048004580556607834
GSGGSSKS	8	Unmodified						0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.305309	665.298033	1.7569	0.0011706	6.1187	0.0040769	7.8755	0.0052475	666.3092079688881	22.573	0.048273	22.573	22.573	22.621	0	786	55	1.1501974	0.032601833	1.1501974	235.11778		6.6643066	-0.017074	0.00040396	-0.0010515	NaN	0.32989	86	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14716			8280	2704	4802	4896							-0.048004580556607834
GSGGSSKS	8	Unmodified						0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.656293	665.298033	0.85509	0.0002853	5.3574	0.0017875	6.2125	0.0020728	333.65824012395495	38.155	0.24025	38.155	38.083	38.324	0	1536	79	0.69119483	0.04837942	0.69119483	282.5728		19.778381	0.095637	0.00035846	0.00075972	NaN	0.27539	259	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20927			8281	2704	4802	4896							-0.048004580556607834
GSGIDRHLF	9	Unmodified	_GSGIDRHLF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5163048095001	1	1001.5163	1000.50903	0.95402	0.00095547	4.3389	0.0043455	5.2929	0.0053009	1001.5227575490992	32.103	0.14479	32.099	31.979	32.123	-0.0037575	228	70	1.4837929	0.040832996	1.4822735	301.25485	0	8.290344						160	7	2	NaN	NaN	NaN	0.31737	1	8447	8447		17.799	2.3363	1	16416			8282	1751	4803	4897	6522	6522					0.008794189862328494
GSGIDRHLF	9	Unmodified						0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1001.5163	1000.50903	1.3859	0.001388	4.7871	0.0047943	6.1729	0.0061823	1001.521733143352	32.104	0.096519	32.104	32.032	32.128	0	228	67	1.4837929	0.03905976	1.4837929	301.25485		7.9303284	0.0024214	0.00015866	0.00075972	NaN	17.799	138	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16557			8283	1751	4803	4897							0.008794189862328494
GSGLHCAG	8	Unmodified	_GSGLHCAG_					0	0	0		nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3035348420001	1	701.303535	700.296258	0.73041	0.00051224	4.366	0.0030619	5.0965	0.0035742	701.3067049931411	26.987	0.1931	26.977	26.929	27.122	-0.010126	1311	91	0.83019954	0.05532837	0.8286801	169.53444	0	11.298553						290	9	3	NaN	NaN	NaN	0.84876	1	3161	3161		0.39566	0	1	29302			8284	3416	4804	4898	6523	6523					-0.06587790345258782
GSGLHCAG	8	Unmodified						0	0	0		nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	701.303535	700.296258	0.88448	0.00062029	5.2206	0.0036612	6.105	0.0042815	701.3076709945756	26.94	0.16892	26.94	26.915	27.084	0	1311	97	0.83019954	0.05902332	0.83019954	169.53444		12.053101	-0.01867	0.00022924	0.00075972	NaN	0.39566	325	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33587			8285	3416	4804	4898							-0.06587790345258782
GSGNGGRP	8	Unmodified	_GSGNGGRP_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3325267845	1	701.332527	700.32525	-0.76527	-0.00053671	7.7681	0.005448	7.0028	0.0049113	701.3382207195906	55.194	0.24022	55.193	55.145	55.386	-0.0006218	657	88	1.2279087	0.052303553	1.2263893	250.75014	0	10.680847						294	11	2	NaN	NaN	NaN	0.84897	1	3164	3164		0.27539	0.045253	1	48524	+		8286	10157	4805	4899	6524	6524					-0.03689929724623653
GSGNLPNH	8	Unmodified	_GSGNLPNH_					0	0	0			REV__ENSG00000170577|ENST00000303077|SIX2	REV__ENSG00000170577|ENST00000303077|SIX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3743915992	1	795.374392	794.367115	1.3297	0.0010576	-5.9572	-0.0047382	-4.6275	-0.0036806	795.3687580475366	30.873	0.19304	30.873	30.825	31.018	0	501	85	1.3214091	0.050228238	1.3214091	269.2304	0	10.233734						278	9	2	NaN	NaN	NaN	0.84455	1	4680	4680		2.7852	0	1	39148	+		8287	10593	4806	4900	6525	6525					-0.03829374036104127
GSGPQQTS	8	Unmodified	_GSGPQQTS_					0	0	0		nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1	nc|ENSG00000079841|Q86UR5-8|RIMS1	nc|ENSG00000079841|Q86UR5-8|RIMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.3424227688	1	761.342423	760.335146	2.0567	0.0015658	-8.5675	-0.0065228	-6.5108	-0.004957	761.336280703473	22.911	0.072298	22.911	22.911	22.983	0	534	37	1.3016734	0.021544695	1.3016734	265.41098	0	4.392975						57	4	2	NaN	NaN	NaN	0.83211	1	4218	4218		4.9097	0.94122	1	3997.9			8288	901	4807	4901	6526	6526					-0.054607865099001174
GSGQLIEMCAA	11	Unmodified	_GSGQLIEMCAA_					0	0	0			REV__ENSG00000160685|ENST00000535420|ZBTB7B	REV__ENSG00000160685|ENST00000535420|ZBTB7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.4859922379999	1	1079.48599	1078.47872	1.634	0.0017639	-0.37976	-0.00040995	1.2543	0.001354	1079.485330260342	29.231	0.072378	29.224	29.2	29.272	-0.0077209	135	79	1.5387528	0.04604411	1.5372335	312.10626	0	9.339172						148	4	3	NaN	NaN	NaN	0.57257	1	11591	11591		15.822	0	1	11619	+		8289	10207	4808	4902	6527	6527					-0.0573844378548074
GSGSKSSG	8	Unmodified	_GSGSKSSG_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENST00000528856.5_1_11:34073295-34118749:+|nuORF;ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENSG00000135387|ENST00000341394|CAPRIN1;ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.1545	0.0003852	6.0939	0.0020333	7.2484	0.0024185	333.65770066631677	41.835	0.26439	41.835	41.738	42.003	0	1500	70	0.71351165	0.04276228	0.71351165	291.69632	0	17.481995						214	12	2	NaN	NaN	NaN	0.84887	1	2463	2463		0.32989	0	1	18795			8290	2938;7428	4809	4903	6528	6528					-0.04800458055649415
GSGTSGNAF	9	Unmodified	_GSGTSGNAF_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.3424227688	1	797.342423	796.335146	2.0251	0.0016147	5.3546	0.0042694	7.3797	0.0058841	797.3454886621417	26.36	0.096529	26.349	26.324	26.421	-0.011135	558	49	1.2873057	0.028753877	1.2857863	262.27097	0	5.8582153						88	5	2	NaN	NaN	NaN	0.47587	1	4611	4611		10.605	0.5534	1	6446.2			8291	1605	4810	4904	6529	6529					-0.07116786509902795
GSGTSGNAF	9	Unmodified						0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	797.342423	796.335146	2.2201	0.0017702	5.7492	0.0045841	7.9692	0.0063542	797.3469944197018	26.36	0.16895	26.36	26.336	26.505	0	561	46	1.2855089	0.026952505	1.2855089	261.90488		5.491211	0.0057116	0.00016107	-0.0001387	NaN	10.605	89	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5980.3			8292	1605	4810	4904							-0.07116786509902795
GSGVIGVC	8	Unmodified	_GSGVIGVC_					0	0	0			REV__nc|ENSG00000117410|Q99437-2|ATP6V0B	REV__nc|ENSG00000117410|Q99437-2|ATP6V0B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3443370242001	1	691.344337	690.337061	1.1559	0.00079915	4.1555	0.0028729	5.3114	0.003672	691.3470081448448	20.983	0.12033	20.969	20.897	21.017	-0.014088	735	76	1.1809633	0.04521966	1.1794438	241.23036	0	9.236847						105	6	2	NaN	NaN	NaN	0.84207	1	2972	2972		3.5732	0	1	6551.4	+		8293	9247	4811	4905	6530	6530					-0.02049449025651029
GSHEGAGV	8	Unmodified	_GSHEGAGV_					0	0	0			REV__ENST00000481406.1_1_7:943651-944759:-|nuORF	REV__ENST00000481406.1_1_7:943651-944759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.3212933962001	1	713.321293	712.314017	0.99786	0.0007118	-9.0106	-0.0064274	-8.0127	-0.0057156	713.3149533916546	32.297	0.072441	32.297	32.297	32.37	0	666	40	1.2224985	0.023446321	1.2224985	249.56483	0	4.7864227						64	4	2	NaN	NaN	NaN	0.83211	1	3465	3465		4.9097	0	1	4055.4	+		8294	12385	4812	4906	6531	6531					-0.05364751818751756
GSHEGAGV	8	Unmodified						0	0	0			REV__ENST00000481406.1_1_7:943651-944759:-|nuORF	REV__ENST00000481406.1_1_7:943651-944759:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	713.321293	712.314017	0.99786	0.0007118	-9.0106	-0.0064274	-8.0127	-0.0057156	713.3149533916546	32.297	0.072441	32.297	32.297	32.37	0	666	40	1.2224985	0.023446321	1.2224985	249.56483		4.7864227	0	0	0	NaN	4.9097	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4055.4	+		8295	12385	4812	4906							-0.05364751818751756
GSKCTKCS	8	Unmodified	_GSKCTKCS_					0	0	0		ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.18330581399994	2	407.183306	812.352059	0.46171	0.000188	-1.4598	-0.00059439	-0.99806	-0.00040639	407.1825796521694	35.41	0.16884	35.41	35.337	35.506	0	1410	40	0.76917666	0.024083614	0.76917666	313.3073	0	9.809906						141	8	3	NaN	NaN	NaN	0.8439	1	4915	4915		3.1533	0	1	10685			8296	4335	4813	4907	6532	6532					-0.061623252199638046
GSKTSGTF	8	Unmodified	_GSKTSGTF_					0	0	0		ENST00000478678.5_1_6:32157511-32157595:-|nuORF	ENST00000478678.5_1_6:32157511-32157595:-|nuORF	ENST00000478678.5_1_6:32157511-32157595:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3835593020001	1	784.383559	783.376283	1.736	0.0013617	4.3566	0.0034172	6.0926	0.0047789	784.38626672489	29.305	0.048286	29.305	29.28	29.329	0	528	64	1.3052634	0.037705302	1.3052634	266.00415	0	7.684082						57	3	2	NaN	NaN	NaN	0.74229	1	4542	4542		16.417	10.951	1	3059.5			8297	7191	4814	4908	6533	6533					-0.02407025470415647
GSKTSGTF	8	Unmodified						0	0	0		ENST00000478678.5_1_6:32157511-32157595:-|nuORF	ENST00000478678.5_1_6:32157511-32157595:-|nuORF	ENST00000478678.5_1_6:32157511-32157595:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	784.383559	783.376283	2.0122	0.0015783	2.8807	0.0022595	4.8928	0.0038379	784.3862516599346	29.304	0.048267	29.296	29.272	29.32	-0.0077229	531	46	1.3034686	0.026920795	1.3019491	265.63837		5.4862976	-0.0042443	-0.00048112	-0.0016572	NaN	16.417	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3413.5			8298	7191	4814	4908							-0.02407025470415647
GSLPSSALI	9	Unmodified	_GSLPSSALI_					0	0	0		nc|ENSG00000124564|O00476|SLC17A3;ENSG00000124564|ENST00000397060|SLC17A3	nc|ENSG00000124564|O00476|SLC17A3	nc|ENSG00000124564|O00476|SLC17A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4774596872002	1	844.47746	843.470183	1.6543	0.001397	-1.4671	-0.0012389	0.18718	0.00015807	844.4768408396516	24.188	0.048328	24.188	24.188	24.237	0	432	28	1.3625998	0.016099215	1.3625998	277.34805	0	3.276886						36	3	2	NaN	NaN	NaN	0.49672	1	5313	5313		9.746	2.8828	1	2437.2			8299	2421	4815	4909	6534	6534					0.04218693631867154
GSLQLWDTAK	10	Unmodified	_GSLQLWDTAK_					0	0	0		nc|ENSG00000112357|O00628-2|PEX7;ENSG00000112357|ENST00000318471|PEX7	nc|ENSG00000112357|O00628-2|PEX7	nc|ENSG00000112357|O00628-2|PEX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.79566324515	2	559.795663	1117.57677	1.6857	0.00094368	-3.0667	-0.0017167	-1.3809	-0.00077303	559.7938122709718	20.525	0.048101	20.511	20.487	20.535	-0.014141	1218	34	0.8873258	0.020235598	0.8858064	359.79068	0	8.205078						41	3	2	NaN	NaN	NaN	0.74854	1	13183	13183		4.7291	1.5175	1	4581.3			8300	1870	4816	4910	6535	6535					0.022688241263495
GSLSIGEVL	9	Unmodified	_GSLSIGEVL_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.74765042005	2	437.74765	873.480748	1.1692	0.00051183	-2.3686	-0.0010368	-1.1993	-0.000525	437.7465759035311	20.165	0.12014	20.165	20.141	20.261	0	1350	40	0.80618626	0.024028838	0.80618626	328.00092	0	9.776276						99	6	2	NaN	NaN	NaN	0.14301	1	5720	5720		29.598	6.2639	1	17672			8301	3683	4817	4911	6536	6536					0.03894676286279264
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	-0.26884	-0.00018394	-9.2293	-0.0063147	-9.4981	-0.0064987	684.2033059009445	58.89	0.11994	58.89	58.794	58.914	-0.00045395	756	49	1.1683017	0.028954625	1.1667823	238.69258	0	5.915634						200	6	4	NaN	NaN	NaN	0.84945	1	2814	2814		0	0	1	25935			8302	4826	4818	4912	6537	6537					-0.15396306247680513
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	0.06776	4.6362E-05	-8.8031	-0.0060231	-8.7353	-0.0059768	684.2028342426287	57.882	0.096046	57.882	57.834	57.93	-0.00050735	744	31	1.1755381	0.018088818	1.1740186	240.171	0	3.6956787						81	5	2	NaN	NaN	NaN	0.84945	1	2815	2815		0	0	1	5866.8			8303	4826	4818	4912	6538	6538					-0.15396306247680513
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	-0.24898	-0.00017036	-7.176	-0.0049099	-7.425	-0.0050802	684.2042670757701	58.243	0.14387	58.242	58.194	58.338	-0.00048065	756	43	1.1683017	0.02533257	1.1667823	238.69257	0	5.1756134						180	7	3	NaN	NaN	NaN	0.84945	1	2816	2816		0	0	1	17176			8304	4826	4818	4912	6539	6539					-0.15396306247680513
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	0.014808	1.0132E-05	-7.1431	-0.0048874	-7.1283	-0.0048772	684.2037754900997	58.027	0.096008	58.026	57.954	58.05	-0.00050735	750	40	1.1719203	0.023519278	1.1704009	239.43185	0	4.8051605						89	5	2	NaN	NaN	NaN	0.84945	1	2817	2817		0	0	1	6472.7			8305	4826	4818	4912	6540	6540					-0.15396306247680513
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	0.13682	9.3612E-05	-5.8817	-0.0040243	-5.7449	-0.0039307	684.204231483652	57.786	0.12	57.786	57.666	57.786	-0.00050735	747	34	1.1737292	0.019898772	1.1722097	239.80144	0	4.0654755						82	6	2	NaN	NaN	NaN	0.84945	1	2818	2818		0	0	1	5175.5			8306	4826	4818	4912	6541	6541					-0.15396306247680513
GSNSGGCC	8	Unmodified	_GSNSGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.2075855462999	1	684.207586	683.200309	-0.070506	-4.8241E-05	-4.631	-0.0031686	-4.7015	-0.0032168	684.2054339584125	58.986	0.048061	58.986	58.938	58.986	-0.00045395	735	55	1.1809633	0.032545924	1.1794438	241.27939	0	6.6493835						90	3	2	NaN	NaN	NaN	0.84945	1	2819	2819		0	0	1	7965.8			8307	4826	4818	4912	6542	6542					-0.15396306247680513
GSPHGGSV	8	Unmodified	_GSPHGGSV_					0	0	0		ZNF618|p.G630Ffs*8|1|0.13|ENSG00000157657|chr9:114049187-114049196|GCCGGCATGT/-|frameshift_variant;ENSG00000157657|ENST00000374126|ZNF618	ZNF618|p.G630Ffs*8|1|0.13|ENSG00000157657|chr9:114049187-114049196|GCCGGCATGT/-|frameshift_variant	ZNF618|p.G630Ffs*8|1|0.13|ENSG00000157657|chr9:114049187-114049196|GCCGGCATGT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3263787741	1	697.326379	696.319102	1.3753	0.00095901	-3.5703	-0.0024896	-2.195	-0.0015306	697.3232196678601	23.754	0.12051	23.754	23.682	23.803	0	636	64	1.2405256	0.03785467	1.2405256	253.35461	0	7.731125						106	6	2	NaN	NaN	NaN	0.84455	1	3165	3165		2.7852	1.5433	1	7273.9			8308	3966	4819	4913	6543	6543					-0.04120447956142925
GSPLAITFF	9	Unmodified	_GSPLAITFF_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.5138451935001	1	952.513845	951.506569	0.96538	0.00091953	-1.2565	-0.0011968	-0.29112	-0.00027729	952.5129718697851	33.214	0.072395	33.214	33.166	33.238	0	273	82	1.4571344	0.048051715	1.4571344	296.04938	0	9.762756						112	4	2	NaN	NaN	NaN	0.47587	1	7129	7129		10.605	1.4818	1	7338.5	+		8309	13624	4820	4914	6544	6544					0.028875705285713593
GSPQGFPF	8	Unmodified	_GSPQGFPF_					0	0	0		ENST00000578442.1_1_17:12693973-12832444:+|nuORF	ENST00000578442.1_1_17:12693973-12832444:+|nuORF	ENST00000578442.1_1_17:12693973-12832444:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.3937300578	1	836.39373	835.386454	0.63553	0.00053155	5.2092	0.004357	5.8448	0.0048885	836.3980679994755	33.454	0.21721	33.452	33.404	33.621	-0.0018501	414	118	1.3733286	0.069785595	1.3718091	279.57516	0	14.206604						517	10	4	NaN	NaN	NaN	0.76633	1	5075	5075		13.737	1.1492	1	110760			8310	7672	4821	4915	6545	6545					-0.037824177451966534
GSPSDPGF	8	Unmodified	_GSPSDPGF_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3257100721	1	763.32571	762.318434	1.4303	0.0010918	5.7259	0.0043708	7.1562	0.0054625	763.3300642280235	27.374	0.16897	27.374	27.326	27.495	0	567	46	1.2819146	0.026955366	1.2819146	261.37003	0	5.495941						120	8	2	NaN	NaN	NaN	0.72043	1	4240	4240		17.78	5.1924	1	8710			8311	5445	4822	4916	6546	6546					-0.07223287395856914
GSRCPGEL	8	Unmodified	_GSRCPGEL_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.3825134445	1	818.382513	817.375237	2.4047	0.001968	-6.393	-0.0052319	-3.9883	-0.0032639	818.3771925189711	23.128	0.14468	23.128	23.103	23.248	0	561	46	1.2855089	0.026952505	1.2855089	261.79062	0	5.4888						171	7	3	NaN	NaN	NaN	0.75561	1	4980	4980		15.175	0	1	17673			8312	5860	4823	4917	6547	6547					-0.040755631109846036
GSSGKGTT	8	Unmodified	_GSSGKGTT_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3366091094	1	694.336609	693.329333	0.70067	0.0004865	5.414	0.0037591	6.1147	0.0042456	694.340106603878	33.985	0.16893	33.984	33.887	34.056	-0.0012474	663	97	1.2243022	0.057723522	1.2227827	250.06203	0	11.789932						175	8	2	NaN	NaN	NaN	0.84897	1	3045	3045		0.27539	0.27539	1	12777			8313	1033	4824	4918	6548	6548					-0.029598850215734274
GSSGSTKA	8	Unmodified	_GSSGSTKA_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3366091094	1	694.336609	693.329333	2.017	0.0014005	-3.5985	-0.0024985	-1.5814	-0.0010981	694.334248397057	26.215	0.096506	26.204	26.18	26.276	-0.011137	1062	43	0.9827221	0.025619924	0.98120266	200.71967	0	5.232834						62	5	2	NaN	NaN	NaN	0.84455	1	3039	3039		2.7852	1.3456	1	4464.3	+	+	8314	8283	4825	4919	6549	6549					-0.029598850215734274
GSSGTTVL	8	Unmodified	_GSSGTTVL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3726602647001	1	721.37266	720.365384	1.2692	0.00091558	4.5711	0.0032975	5.8403	0.0042131	721.3762251219698	28.653	0.096514	28.653	28.629	28.725	0	600	58	1.2621325	0.03419459	1.2621325	257.60144	0	6.9791107						131	5	2	NaN	NaN	NaN	0.8439	1	3593	3593		3.1533	0	1	13999	+		8315	11089	4826	4920	6550	6550					-0.005984278447044744
GSSGTTVL	8	Unmodified						0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	721.37266	720.365384	1.2692	0.00091558	4.5711	0.0032975	5.8403	0.0042131	721.3762251219698	28.653	0.096514	28.653	28.629	28.725	0	600	58	1.2621325	0.03419459	1.2621325	257.60144		6.9791107	0	0	0	NaN	3.1533	131	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13999	+		8316	11089	4826	4920							-0.005984278447044744
GSSHGSAC	8	Unmodified	_GSSHGSAC_					0	0	0			REV__ENST00000512400.1_1_4:675749-678780:-|nuORF	REV__ENST00000512400.1_1_4:675749-678780:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.2620639577999	1	705.262064	704.254787	1.3523	0.00095374	-4.8266	-0.003404	-3.4743	-0.0024503	705.2581862322494	55.124	0.02412	55.124	55.1	55.124	0	534	43	1.3016734	0.025130153	1.3016734	265.7852	0	5.131256						42	2	2	NaN	NaN	NaN	0.84945	1	3290	3290		0	0	1	4093.6	+		8317	10531	4827	4921	6551	6551					-0.10916971104609274
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.251422917	2	496.251423	990.488293	0.99128	0.00049192	-1.747	-0.00086697	-0.75576	-0.00037504	496.2510491795826	14.069	0.26363	14.058	13.986	14.25	-0.010672	1326	55	0.8209676	0.033254504	0.81944823	333.40378	0	13.505035						229	12	3	NaN	NaN	NaN	0.31737	1	8058	8058		17.799	5.7503	1	26288			8318	2232	4828	4922	6552	6552					-0.007331713934263462
GSSSSTLA	8	Unmodified	_GSSSSTLA_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000577174.1_1_16:10934243-10934807:-|nuORF;ENST00000486374.5_1_10:24873343-24884978:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3362747584001	1	709.336275	708.328998	0.9242	0.00065557	5.8494	0.0041492	6.7736	0.0048048	709.3403765224878	20.646	0.12044	20.646	20.597	20.718	0	648	58	1.2333171	0.03425312	1.2333171	251.8	0	6.993286						131	6	3	NaN	NaN	NaN	0.84692	1	3383	3383		1.4396	0	1	11137			8319	1652	4829	4923	6553	6553					-0.0368330474141203
GSSWNIPAGFP	11	Unmodified	_GSSWNIPAGFP_					0	0	0		ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378	2	566.774731	1131.53491	1.7187	0.00097414	-3.7108	-0.0021032	-1.9921	-0.0011291	566.7722583599669	44.829	0.095829	44.841	44.793	44.889	0.011646	1239	25	0.87444305	0.014727116	0.8729236	354.5137	0	5.9706116						27	5	2	NaN	NaN	NaN	0.69801	1	13678	13678		7.5876	0	1	1479.6			8320	5892	4830	4924	6554	6554					-0.025597315621553207
GSTAHPVV	8	Unmodified	_GSTAHPVV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.20595278085	2	384.205953	766.397353	1.822	0.00070003	-6.0705	-0.0023323	-4.2485	-0.0016323	384.2039954274011	26.336	0.16887	26.324	26.228	26.397	-0.011137	1437	55	0.7524962	0.033388138	0.75097674	306.81757	0	13.613434						119	8	2	NaN	NaN	NaN	0.84651	1	4232	4232		1.6704	0.42852	1	8673.6			8321	392	4831	4925	6555	6555					0.004809846290982023
GSTAHPVV	8	Unmodified						0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	384.205953	766.397353	1.8992	0.00072968	-5.4131	-0.0020797	-3.5139	-0.00135	384.203948282369	26.239	0.12066	26.239	26.215	26.336	0	1437	49	0.7524962	0.029671907	0.7524962	306.81757		12.098206	-0.042569	0.00027259	0.00075972	NaN	1.6704	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7316			8322	392	4831	4925							0.004809846290982023
GSTASDQQQ	9	Unmodified	_GSTASDQQQ_					0	0	0		ENST00000440405.2_1_21:37260006-37260102:+|nuORF;ENST00000420261.1_1_6:32846995-32847538:-|nuORF;nc|ENSG00000234515|Q96PQ5|PPP1R2P1	ENST00000440405.2_1_21:37260006-37260102:+|nuORF	ENST00000440405.2_1_21:37260006-37260102:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.3908295244	1	921.39083	920.383553	2.1709	0.0020002	-4.8149	-0.0044364	-2.6441	-0.0024362	921.3871739120897	18.794	0.09602	18.78	18.756	18.852	-0.014061	405	34	1.3786905	0.019655824	1.377171	280.2469	0	3.995453						58	5	2	NaN	NaN	NaN	0.51576	1	6289	6289		8.962	0.67169	1	3720.9			8323	6907	4832	4926	6556	6556					-0.07982337660655503
GSTPVGVC	8	Unmodified	_GSTPVGVC_					0	0	0			REV__ENST00000532378.5_1_11:14912488-14912704:-|nuORF	REV__ENST00000532378.5_1_11:14912488-14912704:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3392516463001	1	719.339252	718.331975	1.4257	0.0010256	1.0308	0.00074149	2.4565	0.0017671	719.3400673835071	28.605	0.072399	28.605	28.556	28.629	0	660	37	1.2261056	0.021637082	1.2261056	250.26155	0	4.4163513						56	4	2	NaN	NaN	NaN	0.84692	1	3563	3563		1.4396	0	1	3641.2	+		8324	12652	4833	4927	6557	6557					-0.03845752888253173
GSVAFMFVL	9	Unmodified	_GSVAFMFVL_					0	0	0			REV__ENSG00000159248|ENST00000290374|GJD2	REV__ENSG00000159248|ENST00000290374|GJD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.7569638961	2	485.756964	969.499375	1.9195	0.00093239	-6.2008	-0.0030121	-4.2813	-0.0020797	485.75499608831785	21.826	0.21683	21.826	21.73	21.946	0	1350	64	0.80618626	0.03880322	0.80618626	327.498	0	15.763092						217	10	3	NaN	NaN	NaN	0.3389	1	7586	7586		16.417	1.2413	1	22845	+		8325	10181	4834	4928	6558	6558					0.013405146564878123
GSVAFMFVL	9	Unmodified						0	0	0			REV__ENSG00000159248|ENST00000290374|GJD2	REV__ENSG00000159248|ENST00000290374|GJD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.756964	969.499375	1.9195	0.00093239	-6.2008	-0.0030121	-4.2813	-0.0020797	485.75499608831785	21.826	0.21683	21.826	21.73	21.946	0	1350	64	0.80618626	0.03880322	0.80618626	327.498		15.763092	-0.005004	0.0010037	0.001684	NaN	16.417	217	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22845	+		8326	10181	4834	4928							0.013405146564878123
GSVFLFHSLPF	11	Unmodified	_GSVFLFHSLPF_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.83204875145	2	625.832049	1249.64954	0.96177	0.0006019	5.5305	0.0034611	6.4922	0.004063	626.3358975556515	33.045	0.16895	33.045	32.997	33.166	0	1137	58	0.9369253	0.034846902	0.9369253	379.41254	0	14.11142						167	8	2	NaN	NaN	NaN	0.7072	1	17774	17774		6.9844	0.73415	1	14379	+		8327	10225	4835	4929	6559	6559					0.03470577919779316
GSWWVWPGR	9	Unmodified	_GSWWVWPGR_					0	0	0		ENST00000398985.1_1_17:25887428-25904874:+|nuORF	ENST00000398985.1_1_17:25887428-25904874:+|nuORF	ENST00000398985.1_1_17:25887428-25904874:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7801505667001	2	565.780151	1129.54575	2.03	0.0011485	3.4361	0.0019441	5.4661	0.0030926	565.7812628773077	19.732	0.12007	19.732	19.636	19.756	0	1236	58	0.876284	0.03498262	0.876284	355.26758	0	14.182831						136	6	2	NaN	NaN	NaN	0.47587	1	14061	14061		10.605	0.85897	1	21488			8328	6817	4836	4930	6560	6560					-0.013842843972042829
GSYSGCSG	8	Unmodified	_GSYSGCSG_					0	0	0			REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.2508305695002	1	717.250831	716.243554	1.7453	0.0012518	0.83296	0.00059744	2.5782	0.0018492	717.2507180498877	25.998	0.16891	25.998	25.829	25.998	0	714	103	1.1936152	0.061455965	1.1936152	243.64322	0	12.544525						230	8	2	NaN	NaN	NaN	0.84945	1	3533	3533		0	0	1	25206	+		8329	9855	4837	4931	6561	6561					-0.1259179319871464
GSYSGCSG	8	Unmodified	_GSYSGCSG_					0	0	0			REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.2508305695002	1	717.250831	716.243554	1.9594	0.0014054	1.7484	0.001254	3.7078	0.0026594	717.2515078483017	26.046	0.28963	26.035	25.842	26.131	-0.011135	714	109	1.1936152	0.06502926	1.1920958	243.64322	0	13.273926						413	13	2	NaN	NaN	NaN	0.84945	1	3460	3460		0	0	1	43793	+		8330	9855	4837	4931	6562	6562					-0.1259179319871464
GTAALAGG	8	Unmodified	_GTAALAGG_					0	0	0			REV__nc|ENSG00000079432|Q96RK0-2|CIC	REV__nc|ENSG00000079432|Q96RK0-2|CIC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	309.16629630410006	2	309.166296	616.31804	0.90976	0.00028127	4.5053	0.0013929	5.415	0.0016741	309.16819525135867	39.863	0.12057	39.863	39.791	39.911	0	1518	55	0.7023569	0.033471584	0.7023569	287.59387	0	13.705597						103	6	3	NaN	NaN	NaN	0.84887	1	1048	1048		0.32989	0	1	10316	+		8331	8642	4838	4932	6563	6563					-0.005466623250299563
GTAALAGG	8	Unmodified						0	0	0			REV__nc|ENSG00000079432|Q96RK0-2|CIC	REV__nc|ENSG00000079432|Q96RK0-2|CIC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	309.166296	616.31804	0.90976	0.00028127	4.5053	0.0013929	5.415	0.0016741	309.16819525135867	39.863	0.12057	39.863	39.791	39.911	0	1518	55	0.7023569	0.033471584	0.7023569	287.59387		13.705597	-0.1224	0.00037922	-0.0001701	NaN	0.32989	103	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10316	+		8332	8642	4838	4932							-0.005466623250299563
GTAALAGG	8	Unmodified						0	0	0			REV__nc|ENSG00000079432|Q96RK0-2|CIC	REV__nc|ENSG00000079432|Q96RK0-2|CIC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	309.166296	616.31804	1.4559	0.00045012	3.5762	0.0011056	5.0321	0.0015557	309.16742415656677	40.102	0.14436	40.108	40.012	40.156	0.0060463	1515	40	0.7042165	0.024175227	0.70269704	288.35535		9.899048	0.1224	-0.00019527	0.0001701	NaN	0.32989	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12682	+		8333	8642	4838	4932							-0.005466623250299563
GTADFPSILTF	11	Unmodified	_GTADFPSILTF_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L;KIAA1549L|p.T338Lfs*33|1|0.14|ENSG00000110427|chr11:33543465-33543471|CACCCAG/-|frameshift_variant	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7978715831	2	584.797872	1167.58119	1.29	0.00075442	-1.3467	-0.00078754	-0.056635	-3.312E-05	584.7968637906401	31.258	0.14479	31.253	31.229	31.374	-0.0050716	1224	97	0.883646	0.058844924	0.88212657	358.11157	0	23.84784						329	7	2	NaN	NaN	NaN	0.1667	1	14863	14863		33.425	1.7499	1	168340			8334	1762	4839	4933	6564	6564					0.0041028854927844804
GTAEVTVVSDG	11	Unmodified	_GTAEVTVVSDG_					0	0	0		nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	nc|ENSG00000020256|Q9NTW7-6|ZFP64	nc|ENSG00000020256|Q9NTW7-6|ZFP64	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7536610447	2	517.753661	1033.49277	1.0079	0.00052183	-3.9745	-0.0020578	-2.9667	-0.001536	517.7515742744391	21.079	0.14445	21.065	20.993	21.138	-0.014004	1275	67	0.85233563	0.040574074	0.8508162	345.9453	0	16.4682						208	7	3	NaN	NaN	NaN	0.48069	1	9707	9707		19.164	7.9933	1	18844			8335	456	4840	4934	6565	6565					-0.022637517611883595
GTAMIFTCFT	10	Unmodified	_GTAMIFTCFT_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.4900149833998	1	1091.49001	1090.48274	2.268	0.0024755	-2.4516	-0.0026759	-0.1836	-0.0002004	1091.484722952897	29.86	0.09655	29.86	29.811	29.908	0	123	46	1.5458313	0.026542783	1.5458313	313.49838	0	5.3829346						85	5	2	NaN	NaN	NaN	0.74182	1	12406	12406		5.1889	0.77579	1	5825.6			8336	3230	4841	4935	6566	6566					-0.058883542917783416
GTAMIFTCFT	10	Unmodified						0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1091.49001	1090.48274	1.354	0.0014779	0.91776	0.0010017	2.2718	0.0024796	1091.4906579240003	29.859	0.048262	29.852	29.852	29.9	-0.0070648	117	61	1.5493695	0.03538847	1.54785	314.2159		7.17688	-0.0039877	0.0018061	0.0010093	NaN	5.1889	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5123			8337	3230	4841	4935							-0.058883542917783416
GTANGVPP	8	Unmodified	_GTANGVPP_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	712.3624299294	1	712.36243	711.355153	0.90229	0.00064276	6.2281	0.0044366	7.1303	0.0050794	712.365992822081	30.8	0.19303	30.794	30.746	30.939	-0.0057545	618	79	1.2513325	0.046805143	1.2498131	255.4575	0	9.555176						153	9	2	NaN	NaN	NaN	0.8439	1	3386	3386		3.1533	0	1	16146			8338	1402	4842	4936	6567	6567					-0.012069907792920276
GTAQERLY	8	Unmodified	_GTAQERLY_					0	0	0			REV__nc|ENSG00000143384|Q07820-2|MCL1	REV__nc|ENSG00000143384|Q07820-2|MCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	937.4737712927999	1	937.473771	936.466495	0.3654	0.00034256	5.4605	0.0051191	5.8259	0.0054616	937.478904740459	53.264	0.21582	53.264	53.216	53.432	-0.00053787	252	262	1.4695803	0.15481746	1.4680609	298.64645	0	31.461823						606	10	2	NaN	NaN	NaN	0.80692	1	6613	6613		8.2903	0	1	198810	+		8339	9865	4843	4937	6568	6568					-0.004279761420093564
GTCAALGG	8	Unmodified	_GTCAALGG_					0	0	0			REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.15233164910006	2	325.152332	648.29011	1.6017	0.0005208	0.51665	0.00016799	2.1184	0.00068879	325.1526181495186	37.239	0.12043	37.241	37.193	37.313	0.0022507	1533	37	0.6930556	0.022328973	0.6915362	283.48282	0	9.133301						69	6	2	NaN	NaN	NaN	0.84651	1	1920	1920		1.6704	0	1	5402.8	+		8340	12656	4844	4938	6569	6569					-0.04810308576770694
GTCAALGG	8	Unmodified						0	0	0			REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	325.152332	648.29011	1.0717	0.00034846	-0.040149	-1.3055E-05	1.0315	0.00033541	325.1522986493995	37.506	0.14449	37.506	37.434	37.578	0	1527	103	0.69677675	0.06323111	0.69677675	285.00485		25.863617	0.13252	-7.7478E-05	0.0026203	NaN	1.6704	224	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28726	+		8341	12656	4844	4938							-0.04810308576770694
GTCAALGG	8	Unmodified						0	0	0			REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	325.152332	648.29011	1.6017	0.0005208	0.51665	0.00016799	2.1184	0.00068879	325.1526181495186	37.239	0.12043	37.241	37.193	37.313	0.0022507	1533	37	0.6930556	0.022328973	0.6915362	283.48282		9.133301	-0.13252	0.00028461	-0.0026203	NaN	1.6704	69	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5402.8	+		8342	12656	4844	4938							-0.04810308576770694
GTDLENCDL	9	Unmodified	_GTDLENCDL_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9;ENST00000430462.1_1_17:20016000-20016300:+|nuORF	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.4037023965999	1	979.403702	978.396426	2.3652	0.0023165	-0.8525	-0.00083494	1.5127	0.0014815	979.4020874182575	16.419	0.14389	16.406	16.286	16.43	-0.012995	354	46	1.4090419	0.026754975	1.4075224	286.16602	0	5.4337463						123	7	2	NaN	NaN	NaN	0.13602	1	7672	7672		30.61	4.4952	1	9452.9			8343	1490	4845	4939	6570	6570					-0.09363642592791166
GTEALVWL	8	Unmodified	_GTEALVWL_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-3|HSD17B7;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4825450651	1	888.482545	887.475269	1.4221	0.0012635	-3.245	-0.0028831	-1.8229	-0.0016196	888.4781384466692	30.632	0.14482	30.632	30.608	30.753	0	411	115	1.3751161	0.06785524	1.3751161	279.67303	0	13.800476						211	7	3	NaN	NaN	NaN	0.76633	1	5908	5908		13.737	0	1	21294			8344	2745	4846	4940	6571	6571					0.027029974944639434
GTEDGIYTL	9	Unmodified	_GTEDGIYTL_					0	0	0		ENST00000554990.5_1_14:50886739-50915587:-|nuORF;ENSG00000012983|ENST00000682126|MAP4K5	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.4571181755999	1	968.457118	967.449842	1.1445	0.0011084	-0.39729	-0.00038476	0.74719	0.00072362	968.4565006231184	24.623	0.12056	24.61	24.586	24.707	-0.012394	285	67	1.4500183	0.03916359	1.4484988	294.5343	0	7.955078						134	6	2	NaN	NaN	NaN	0.14301	1	7389	7389		29.598	1.8095	1	13013			8345	421	4847	4941	6572	6572					-0.03518521818625686
GTEIFLLFV	9	Unmodified	_GTEIFLLFV_					0	0	0		ENST00000424436.1_1_22:39488108-39488848:+|nuORF	ENST00000424436.1_1_22:39488108-39488848:+|nuORF	ENST00000424436.1_1_22:39488108-39488848:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5870101366	1	1038.58701	1037.57973	1.4997	0.0015576	-0.24298	-0.00025236	1.2567	0.0013052	1038.58584124328	38.417	0.096088	38.421	38.373	38.469	0.0040245	90	55	1.5652816	0.031805873	1.5637622	317.6452	0	6.4544067						115	5	2	NaN	NaN	NaN	0.12945	1	9901	9901		31.561	6.6	1	9028.1			8346	6934	4848	4942	6573	6573					0.06244699251192287
GTFFYFFGFE	10	Unmodified	_GTFFYFFGFE_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.28185737815	2	631.281857	1260.54916	0.7133	0.00045029	-4.6475	-0.0029339	-3.9342	-0.0024836	631.2796630348603	32.151	0.26545	32.148	32.051	32.316	-0.0037613	1161	52	0.9222442	0.031205654	0.92072475	373.4321	0	12.635712						213	12	3	NaN	NaN	NaN	0.68669	1	17228	17228		8.962	0.71716	1	20969	+		8347	10005	4849	4943	6574	6574					-0.07069079133862033
GTGHSYEP	8	Unmodified	_GTGHSYEP_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.358072833	1	847.358073	846.350796	1.3106	0.0011106	-4.8528	-0.0041121	-3.5422	-0.0030015	847.3541052197434	24.406	0.048258	24.406	24.381	24.43	0	432	43	1.3625998	0.02504456	1.3625998	277.33292	0	5.0973816						72	3	3	NaN	NaN	NaN	0.78264	1	5337	5337		11.548	0	1	7257.4	+		8348	13126	4850	4944	6575	6575					-0.07852499992850426
GTGHSYEP	8	Unmodified	_GTGHSYEP_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.358072833	1	847.358073	846.350796	1.3499	0.0011439	-4.4943	-0.0038083	-3.1444	-0.0026644	847.3547729344133	24.478	0.12052	24.478	24.454	24.574	0	417	64	1.3715409	0.037552834	1.3715409	279.15274	0	7.643219						152	6	3	NaN	NaN	NaN	0.77489	1	5338	5338		12.588	0	1	11929	+		8349	13126	4850	4944	6576	6576					-0.07852499992850426
GTGHSYEP	8	Unmodified						0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	847.358073	846.350796	1.3499	0.0011439	-4.4943	-0.0038083	-3.1444	-0.0026644	847.3547729344133	24.478	0.12052	24.478	24.454	24.574	0	417	64	1.3715409	0.037552834	1.3715409	279.15274		7.643219	0.0064687	-9.5031E-05	0.00075972	NaN	12.588	152	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11929	+		8350	13126	4850	4944							-0.07852499992850426
GTGKQSGD	8	Unmodified	_GTGKQSGD_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3424227688	1	749.342423	748.335146	1.4293	0.001071	-2.205	-0.0016523	-0.77575	-0.0005813	749.3413546120609	45.694	0.096092	45.694	45.646	45.742	0	654	52	1.2297117	0.030650854	1.2297117	250.8092	0	6.251465						130	5	3	NaN	NaN	NaN	0.84782	1	4017	4017		0.92586	0.23471	1	18133	+		8351	13543	4851	4945	6577	6577					-0.04908786509906804
GTGKQSGD	8	Unmodified						0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.342423	748.335146	1.4293	0.001071	-2.205	-0.0016523	-0.77575	-0.0005813	749.3413546120609	45.694	0.096092	45.694	45.646	45.742	0	654	52	1.2297117	0.030650854	1.2297117	250.8092		6.251465	0	0	0	NaN	0.92586	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18133	+		8352	13543	4851	4945							-0.04908786509906804
GTGNSLGS	8	Unmodified	_GTGNSLGS_					0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3209590452002	1	692.320959	691.313683	1.4936	0.001034	5.2716	0.0036496	6.7652	0.0046837	692.3258990298848	26.36	0.096529	26.349	26.324	26.421	-0.011135	711	64	1.1954219	0.037939787	1.1939025	244.17706	0	7.749588						104	5	2	NaN	NaN	NaN	0.84887	1	2982	2982		0.32989	0	1	10117	+		8353	9991	4852	4946	6578	6578					-0.0443217153859905
GTGNSLGS	8	Unmodified						0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.320959	691.313683	1.9179	0.0013278	5.436	0.0037635	7.354	0.0050913	692.3239431686517	26.36	0.12066	26.36	26.312	26.432	0	714	52	1.1936152	0.0307132	1.1936152	243.80803		6.2734833	0.0057116	4.6346E-05	-0.00014361	NaN	0.32989	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10584	+		8354	9991	4852	4946							-0.0443217153859905
GTGNSLGS	8	Unmodified						0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	692.320959	691.313683	1.4936	0.001034	5.2716	0.0036496	6.7652	0.0046837	692.3258990298848	26.36	0.096529	26.349	26.324	26.421	-0.011135	711	64	1.1954219	0.037939787	1.1939025	244.17706		7.749588	-0.0057116	-6.7495E-05	0.00014361	NaN	0.32989	104	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10117	+		8355	9991	4852	4946							-0.0443217153859905
GTGSCCGG	8	Unmodified	_GTGSCCGG_					0	0	0		ENST00000543774.6_1_16:31128962-31129094:+|nuORF	ENST00000543774.6_1_16:31128962-31129094:+|nuORF	ENST00000543774.6_1_16:31128962-31129094:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.2017718869001	1	641.201772	640.194495	2.9354	0.0018822	-2.7727	-0.0017779	0.16266	0.0001043	641.199063431803	25.998	0.60332	25.987	25.769	26.373	-0.011137	828	163	1.1248186	0.097984076	1.1232992	230.11156	0	20.045258						1565	26	4	NaN	NaN	NaN	0.84887	1	1637	1637		0.32989	0	1	266180			8356	7510	4853	4947	6579	6579					-0.13999404759317713
GTGVAGCYV	9	Unmodified	_GTGVAGCYV_					0	0	0			REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	826.3763654341001	1	826.376365	825.369089	1.8137	0.0014988	-0.57264	-0.00047322	1.2411	0.0010256	826.377774382192	32.201	0.024151	32.201	32.177	32.201	0	438	34	1.359022	0.019681096	1.359022	276.71707	0	4.007324						35	2	2	NaN	NaN	NaN	0.62619	1	5091	5091		4.4131	0	1	2134.1	+		8357	8983	4854	4948	6580	6580					-0.05058081342497189
GTGVAGCYV	9	Unmodified						0	0	0			REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	826.376365	825.369089	1.8137	0.0014988	-0.57264	-0.00047322	1.2411	0.0010256	826.377774382192	32.201	0.024151	32.201	32.177	32.201	0	438	34	1.359022	0.019681096	1.359022	276.71707		4.007324	-0.14267	-0.0033974	0.00075972	NaN	4.4131	35	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2134.1	+		8358	8983	4854	4948							-0.05058081342497189
GTGVAGCYV	9	Unmodified						0	0	0			REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	REV__ENST00000428288.2_1_7:27565835-27702463:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	826.376365	825.369089	1.101	0.00090988	5.652	0.0046707	6.753	0.0055805	826.3808817198877	32.489	0.07238	32.486	32.414	32.486	-0.0031013	438	46	1.359022	0.026834846	1.3575026	276.71704		5.4639587	0.14267	0.0017464	-0.00075972	NaN	4.4131	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7623.9	+		8359	8983	4854	4948							-0.05058081342497189
GTHAVAGG	8	Unmodified	_GTHAVAGG_					0	0	0			REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3314641520001	1	669.331464	668.324188	0.83603	0.00055958	-8.6197	-0.0057695	-7.7837	-0.0052099	669.325744745685	41.52	0.12017	41.529	41.505	41.625	0.0082626	759	70	1.1664921	0.041615486	1.1649727	238.42702	0	8.506058						166	6	2	NaN	NaN	NaN	0.8439	1	2458	2458		3.1533	1.7138	1	18152	+		8360	12369	4855	4949	6581	6581					-0.023241440935180435
GTHAVAGG	8	Unmodified						0	0	0			REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.331464	668.324188	0.90149	0.0006034	-9.2021	-0.0061593	-8.3006	-0.0055559	669.3250267658254	41.474	0.1204	41.474	41.353	41.474	0	765	67	1.1628724	0.039816737	1.1628724	237.68716		8.138412	-0.027425	-0.00021295	-0.0010501	NaN	3.1533	174	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16980	+		8361	12369	4855	4949							-0.023241440935180435
GTHAVAGG	8	Unmodified						0	0	0			REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	REV__ENST00000479169.5_1_2:242177863-242181895:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	0.83603	0.00055958	-8.6197	-0.0057695	-7.7837	-0.0052099	669.325744745685	41.52	0.12017	41.529	41.505	41.625	0.0082626	759	70	1.1664921	0.041615486	1.1649727	238.42702		8.506058	0.027425	0.00017687	0.0010501	NaN	3.1533	166	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18152	+		8362	12369	4855	4949							-0.023241440935180435
GTHGGGGK	8	Unmodified	_GTHGGGGK_					0	0	0		ENST00000475826.1_1_6:32121346-32121991:-|nuORF	ENST00000475826.1_1_6:32121346-32121991:-|nuORF	ENST00000475826.1_1_6:32121346-32121991:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.66699479585	2	335.666995	669.319437	1.1957	0.00040136	-4.3917	-0.0014741	-3.196	-0.0010728	335.66708710800197	42.219	0.096001	42.219	42.195	42.291	0	1533	52	0.6930556	0.031630933	0.6930556	283.2994	0	12.929749						141	5	3	NaN	NaN	NaN	0.84887	1	2581	2581		0.32989	0	1	16995			8363	7178	4856	4950	6582	6582					-0.028450282362882717
GTIASKGK	8	Unmodified	_GTIASKGK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.4515792877002	1	761.451579	760.444303	1.4335	0.0010915	3.0092	0.0022914	4.4427	0.0033829	761.4537104424061	41.111	0.072327	41.118	41.118	41.191	0.0074959	585	40	1.2711272	0.023381352	1.2696078	259.18192	0	4.7674255						67	4	2	NaN	NaN	NaN	0.84756	1	4146	4146		1.072	0	1	5545.9			8364	2315	4857	4951	6583	6583					0.05449844180247965
GTIDALSNPI	10	Unmodified	_GTIDALSNPI_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5309518206999	1	1000.53095	999.523675	1.3944	0.0013951	-6.0583	-0.0060615	-4.6639	-0.0046664	1000.5247910291583	30.896	0.096561	30.891	30.842	30.939	-0.0057545	207	58	1.496219	0.033713818	1.4946996	303.78186	0	6.845001						114	5	3	NaN	NaN	NaN	0.62092	1	8392	8392		13.463	0.46021	1	13376			8365	2759	4858	4952	6584	6584					0.0238944634369318
GTKACLGSSLT	11	Unmodified	_GTKACLGSSLT_					0	0	0		ENST00000483873.6_1_9:135545612-135545816:+|nuORF	ENST00000483873.6_1_9:135545612-135545816:+|nuORF	ENST00000483873.6_1_9:135545612-135545816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5295716121998	1	1037.52957	1036.5223	1.2449	0.0012916	1.3561	0.001407	2.601	0.0026986	1037.5316636323341	32.732	0.14476	32.732	32.683	32.828	0	183	55	1.510409	0.031913996	1.510409	306.5139	0	6.4764404						152	7	2	NaN	NaN	NaN	0.73455	1	10065	10065		5.1889	1.2204	1	14586			8366	7224	4859	4953	6585	6585					0.00549488983278934
GTPDITVEI	9	Unmodified	_GTPDITVEI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4935036819	1	944.493504	943.486227	2.0206	0.0019085	-1.1677	-0.0011029	0.85294	0.00080559	944.4926670998886	23.537	0.12061	23.524	23.476	23.596	-0.01305	312	58	1.433996	0.03384292	1.4324765	291.38364	0	6.87677						188	6	3	NaN	NaN	NaN	0.20577	1	6768	6768		24.961	1.6266	1	14662			8367	4162	4860	4954	6586	6586					0.012223550780959158
GTPDITVEI	9	Unmodified						0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	944.493504	943.486227	1.7799	0.0016811	-0.73471	-0.00069393	1.0452	0.00098722	944.492685372766	23.513	0.14458	23.513	23.465	23.61	0	315	52	1.4322147	0.03028047	1.4322147	291.0217		6.152893	-0.005343	0.00025818	-0.00013088	NaN	24.961	163	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12850			8368	4162	4860	4954							0.012223550780959158
GTPLMLMAMST	11	Unmodified	_GTPLMLMAMST_					0	0	0			REV__ENST00000571309.1_1_17:4701352-4701415:+|nuORF	REV__ENST00000571309.1_1_17:4701352-4701415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.853567529	3	384.853568	1151.53887	1.1986	0.0004613	-7.4827	-0.0028798	-6.2841	-0.0024185	384.85140101347093	20.814	0.048134	20.814	20.79	20.838	0	1533	40	0.6930556	0.024191022	0.6930556	421.37192	0	14.707916						75	3	3	NaN	NaN	NaN	0.65577	1	14852	14852		4.9007	0	1	6601	+		8369	12827	4861	4955	6587	6587					-0.03083469446619347
GTRNAGYF	8	Unmodified	_GTRNAGYF_					0	0	0			REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	REV__tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4213417918	1	885.421342	884.414065	1.1128	0.00098532	-8.623	-0.007635	-7.5102	-0.0066497	885.4134787330509	31.283	0.19302	31.277	31.229	31.422	-0.0050716	375	67	1.3965509	0.03927195	1.3950315	284.0475	0	7.98761						219	9	3	NaN	NaN	NaN	0.67593	1	5736	5736		20.555	1.3919	1	18300	+		8370	13624	4862	4956	6588	6588					-0.032765144849577155
GTSGIRFIY	9	Unmodified	_GTSGIRFIY_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.27436669705	2	507.274367	1012.53418	2.1358	0.0010834	-4.7926	-0.0024312	-2.6569	-0.0013478	507.2712656259294	23.176	0.072296	23.176	23.152	23.224	0	1299	43	0.8375814	0.025831044	0.8375814	340.04935	0	10.487122						55	4	2	NaN	NaN	NaN	0.61852	1	9084	9084		4.7291	1.4681	1	6262.1			8371	2521	4863	4957	6589	6589					0.028414737888056152
GTSGTSMF	8	Unmodified	_GTSGTSMF_					0	0	0		ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.3290808905001	1	787.329081	786.321804	2.0562	0.0016189	3.833	0.0030178	5.8892	0.0046367	787.3326334040715	36.35	0.50634	36.35	36.157	36.663	0	528	133	1.3052634	0.07904804	1.3052634	265.987	0	16.108444						1060	22	5	NaN	NaN	NaN	0.76633	1	4578	4578		13.737	3.6855	1	358790			8372	1301	4864	4958	6590	6590					-0.0799036061349625
GTSGTSMF	8	Unmodified	_GTSGTSMF_					0	0	0		ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.3290808905001	1	787.329081	786.321804	2.2281	0.0017542	4.2583	0.0033527	6.4864	0.0051069	787.333006536917	36.348	0.48168	36.35	36.229	36.711	0.0016747	525	136	1.3070582	0.08084893	1.3055388	266.35272	0	16.475418						1035	21	5	NaN	NaN	NaN	0.69631	1	4491	4491		19.285	5.5477	1	335850			8373	1301	4864	4958	6591	6591					-0.0799036061349625
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.2561739439	2	453.256174	904.497795	1.2313	0.00055811	-2.2835	-0.001035	-1.0522	-0.0004769	453.2552428645326	13.901	0.11985	13.89	13.818	13.938	-0.010672	1359	46	0.8006399	0.027743638	0.7991205	325.57153	0	11.281677						101	6	2	NaN	NaN	NaN	0.34922	1	6040	6040		15.822	4.6516	1	9447.7			8374	800	4865	4959	6592	6592					0.0417259689210141
GTSSVIVSR	9	Unmodified						0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	453.256174	904.497795	1.5113	0.00068502	-2.7011	-0.0012243	-1.1898	-0.00053927	453.25458011392817	13.925	0.16802	13.925	13.853	14.021	0	1362	37	0.79879075	0.022191346	0.79879075	324.81958		9.023865	0.017341	-0.00020809	-0.00016487	NaN	15.822	110	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9913.9			8375	800	4865	4959							0.0417259689210141
GTTAYDKLI	9	Unmodified	_GTTAYDKLI_					0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.26620731395	2	491.266207	980.517862	1.824	0.00089605	-6.1078	-0.0030006	-4.2838	-0.0021045	491.26601350489256	21.802	0.096275	21.802	21.778	21.874	0	1314	67	0.8283535	0.040622413	0.8283535	336.45013	0	16.499512						109	5	3	NaN	NaN	NaN	0.27608	1	7903	7903		20.449	3.8645	1	9215.1	+		8376	13445	4866	4960	6593	6593					0.026823478320466165
GTTAYDKLI	9	Unmodified						0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	491.266207	980.517862	1.824	0.00089605	-6.1078	-0.0030006	-4.2838	-0.0021045	491.26601350489256	21.802	0.096275	21.802	21.778	21.874	0	1314	67	0.8283535	0.040622413	0.8283535	336.45013		16.499512	-0.0049979	-0.0011241	0.00075972	NaN	20.449	109	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9215.1	+		8377	13445	4866	4960							0.026823478320466165
GTTGSSFM	8	Unmodified	_GTTGSSFM_					0	0	0			REV__ENST00000316543.14_1_12:125591673-125609365:+|nuORF	REV__ENST00000316543.14_1_12:125591673-125609365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.3290808905001	1	787.329081	786.321804	1.7994	0.0014167	3.0385	0.0023923	4.8379	0.003809	787.3315669088959	36.76	0.04805	36.76	36.712	36.76	0	531	37	1.3034686	0.0215379	1.3034686	265.62125	0	4.388977						53	3	2	NaN	NaN	NaN	0.8439	1	4577	4577		3.1533	0	1	3328.1	+		8378	8663	4867	4961	6594	6594					-0.0799036061349625
GTYIKDDTIF	10	Unmodified	_GTYIKDDTIF_					0	0	0		nc|ENSG00000131323|Q13114-2|TRAF3;ENSG00000131323|ENST00000392745|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.79532889415	2	586.795329	1171.5761	2.2006	0.0012913	-8.2496	-0.0048409	-6.049	-0.0035496	586.7902904107456	26.167	0.12064	26.167	26.143	26.263	0	1134	34	0.9387595	0.020174503	0.9387595	380.4321	0	8.17572						128	6	3	NaN	NaN	NaN	0.5358	1	15539	15539		17.97	1.1114	1	12547			8379	2703	4868	4962	6595	6595					-0.0028201531333706953
GTYIKDDTIF	10	Unmodified						0	0	0		nc|ENSG00000131323|Q13114-2|TRAF3;ENSG00000131323|ENST00000392745|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	586.795329	1171.5761	2.1574	0.0012659	-14.734	-0.0086458	-12.577	-0.0073799	586.7857320255249	25.949	0.096537	25.938	25.914	26.01	-0.0116	1179	55	0.9112251	0.033071637	0.90970564	369.2738		13.402283	-0.11452	-0.0052943	-0.014527	NaN	17.97	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10476			8380	2703	4868	4962							-0.0028201531333706953
GTYVTLNKE	9	Unmodified	_GTYVTLNKE_					0	0	0			REV__ENSG00000157224|ENST00000496677|CLDN12	REV__ENSG00000157224|ENST00000496677|CLDN12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5309518207	1	1024.53095	1023.52368	1.2207	0.0012507	3.3889	0.0034721	4.6097	0.0047227	1024.5337806889488	30.583	0.21716	30.577	30.48	30.698	-0.0057545	180	67	1.5121819	0.03899765	1.5106624	306.92484	0	7.915283						218	10	2	NaN	NaN	NaN	0.49999	1	9320	9320		9.6116	1.3214	1	22989	+		8381	10142	4869	4963	6596	6596					0.012854463437065533
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851-2|MICAL2	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2847344181	2	512.284734	1022.55492	1.3676	0.00070061	-0.63135	-0.00032343	0.73627	0.00037718	512.2848905593132	23.031	0.096298	23.017	22.993	23.09	-0.013294	1272	40	0.854179	0.023961365	0.8526596	346.74222	0	9.726776						96	5	2	NaN	NaN	NaN	0.39244	1	9279	9279		14.042	5.0796	1	13750			8382	6084;2836	4870	4964	6597	6597					0.04454064168464811
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.27162704285007	2	466.271627	930.528701	0.87765	0.00040922	-1.3561	-0.00063229	-0.47841	-0.00022307	466.27088508894445	20.79	0.1446	20.79	20.742	20.887	0	1338	49	0.81357855	0.029562771	0.81357855	330.69443	0	12.016357						165	7	3	NaN	NaN	NaN	0.2345	1	6623	6623		23.118	9.076	1	27416			8383	4223	4871	4965	6598	6598					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.27162704285007	2	466.271627	930.528701	0.1273	5.9354E-05	-0.19695	-9.1833E-05	-0.069656	-3.2479E-05	466.27118007085005	20.815	0.12036	20.801	20.752	20.873	-0.014088	1335	82	0.8154261	0.049884498	0.81390667	331.4454	0	20.27652						172	6	3	NaN	NaN	NaN	0.02857	1	6485	6485		60.982	34.867	1	26087			8384	4223	4871	4965	6599	6599					0.06065794997005014
GVAPLHLPHI	10	Unmodified	_GVAPLHLPHI_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3138262085502	2	527.313826	1052.6131	1.6313	0.00086019	-4.655	-0.0024546	-3.0237	-0.0015944	527.311629721411	16.23	0.12008	16.23	16.182	16.302	0	1257	46	0.86339295	0.027635753	0.86339295	350.34955	0	11.214111						115	6	3	NaN	NaN	NaN	0.6965	1	10762	10762		8.2903	0.74991	1	9765.4			8385	5856	4872	4966	6600	6600					0.08889745813758054
GVAPLHLPHI	10	Unmodified						0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.313826	1052.6131	2.0996	0.0011072	-5.9321	-0.0031281	-3.8325	-0.0020209	527.3111020234439	16.395	0.047926	16.382	16.334	16.382	-0.012993	1251	40	0.8670771	0.023950994	0.8655577	351.8445		9.718903	0.07596	-0.00064434	0.0010824	NaN	8.2903	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4609.1			8386	5856	4872	4966							0.08889745813758054
GVAVAAHN	8	Unmodified	_GVAVAAHN_					0	0	0			REV__ENST00000244670.12_1_6:42984918-42985899:+|nuORF	REV__ENST00000244670.12_1_6:42984918-42985899:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3893133819	1	738.389313	737.382037	0.89846	0.00066342	-7.8502	-0.0057965	-6.9518	-0.0051331	738.3820993235234	31.451	0.12069	31.447	31.423	31.544	-0.0044155	534	139	1.3016734	0.08268535	1.300154	265.55734	0	16.86882						277	6	2	NaN	NaN	NaN	0.84207	1	3805	3805		3.5732	0	1	20215	+		8387	9382	4873	4967	6601	6601					0.00284117831893127
GVCVARAD	8	Unmodified	_GVCVARAD_					0	0	0			REV__ENSG00000196570|ENST00000358571|PFN3	REV__ENSG00000196570|ENST00000358571|PFN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.3875988223999	1	790.387599	789.380322	1.8868	0.0014913	4.8588	0.0038403	6.7455	0.0053316	790.3909316697479	27.784	0.072367	27.784	27.76	27.833	0	537	37	1.2998781	0.021544695	1.2998781	264.87198	0	4.390106						64	4	2	NaN	NaN	NaN	0.81807	1	4618	4618		6.794	1.3281	1	4760.6	+		8388	11110	4874	4968	6602	6602					-0.022792592483824592
GVCVARAD	8	Unmodified						0	0	0			REV__ENSG00000196570|ENST00000358571|PFN3	REV__ENSG00000196570|ENST00000358571|PFN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	790.387599	789.380322	1.8868	0.0014913	4.8588	0.0038403	6.7455	0.0053316	790.3909316697479	27.784	0.072367	27.784	27.76	27.833	0	537	37	1.2998781	0.021544695	1.2998781	264.87198		4.390106	-0.0068797	0.00081243	0.00075972	NaN	6.794	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4760.6	+		8389	11110	4874	4968							-0.022792592483824592
GVDILIVLI	9	Unmodified	_GVDILIVLI_					0	0	0		ENSG00000198092|ENST00000356291|TMPRSS11F	ENSG00000198092|ENST00000356291|TMPRSS11F	ENSG00000198092|ENST00000356291|TMPRSS11F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.6233956429002	1	954.623396	953.616119	1.5941	0.0015218	0.16654	0.00015898	1.7607	0.0016808	954.6230310385417	36.228	0.12057	36.229	36.181	36.301	0.0011024	237	79	1.4784646	0.046161532	1.4769452	300.3736	0	9.3784485						221	6	3	NaN	NaN	NaN	0.03623	1	7036	7036		52.758	5.6225	1	22952			8390	5756	4875	4969	6603	6603					0.13745576147903193
GVDPSADPEL	10	Unmodified	_GVDPSADPEL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.462931835	1	999.462932	998.455655	1.6721	0.0016712	1.1468	0.0011462	2.8188	0.0028173	999.4636539300718	20.959	0.072157	20.959	20.911	20.983	0	285	58	1.4500183	0.03380692	1.4500183	294.40582	0	6.8640137						79	4	2	NaN	NaN	NaN	0.73444	1	8513	8513		5.6942	2.8047	1	5499.5			8391	7200	4876	4970	6604	6604					-0.043634233069496986
GVEAGPDLL	9	Unmodified	_GVEAGPDLL_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;SNX14-SYNCRIP|3|fusion;SNX14-SYNCRIP|2|fusion	nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4567242451002	1	870.456724	869.449448	1.841	0.0016025	-0.35516	-0.00030916	1.4858	0.0012933	870.4562266576745	23.513	0.12054	23.513	23.441	23.562	0	402	52	1.3804773	0.030380487	1.3804773	280.85223	0	6.180786						130	6	2	NaN	NaN	NaN	0.31737	1	5656	5656		17.799	0	1	9468.1			8392	8055	4877	4971	6605	6605					0.00950103252205281
GVEGGGCC	8	Unmodified	_GVEGGGCC_					0	0	0		ENST00000370008.3_1_1:109289315-109289390:+|nuORF	ENST00000370008.3_1_1:109289315-109289390:+|nuORF	ENST00000370008.3_1_1:109289315-109289390:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.2330720153	1	681.233072	680.225796	-0.42567	-0.00028998	-3.257	-0.0022188	-3.6826	-0.0025087	681.2318212548674	55.098	0.14411	55.097	55.049	55.193	-0.0006218	753	79	1.1701111	0.047015905	1.1685916	239.08275	0	9.606522						209	7	2	NaN	NaN	NaN	0.84692	1	2756	2756		1.4396	0	1	23871			8393	6644	4878	4972	6606	6606					-0.12710831725246408
GVEVPDVEL	9	Unmodified	_GVEVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4935036819	1	956.493504	955.486227	1.4841	0.0014196	0.89415	0.00085525	2.3783	0.0022748	956.4943407798789	27.471	0.096556	27.471	27.422	27.519	0	312	124	1.433996	0.073044896	1.433996	291.331	0	14.839844						314	5	2	NaN	NaN	NaN	0.055351	1	7216	7216		44.638	5.7206	1	71979			8394	2444	4879	4973	6607	6607					0.006703550781026024
GVEVPDVEL	9	Unmodified	_GVEVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4935036819	1	956.493504	955.486227	1.3745	0.0013147	-0.0033356	-3.1905E-06	1.3712	0.0013115	956.4935633765692	27.47	0.12067	27.46	27.436	27.557	-0.0095501	309	115	1.435777	0.067703724	1.4342575	291.6928	0	13.7547						389	6	4	NaN	NaN	NaN	0.01452	1	7077	7077		79.199	37.414	1	71439			8395	2444	4879	4973	6608	6608					0.006703550781026024
GVFAIIIK	8	Unmodified	_GVFAIIIK_					0	0	0		tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.78383896109995	2	430.783839	859.553125	1.7089	0.00073616	-3.1753	-0.0013679	-1.4664	-0.0006317	430.78253179214687	22.935	0.16847	22.935	22.911	23.079	0	1425	55	0.7599118	0.03336644	0.7599118	309.25137	0	13.578705						201	8	4	NaN	NaN	NaN	0.81807	1	5529	5529		6.794	0	1	40732			8396	13736	4880	4974	6609	6609					0.11773055150501932
GVGGGRKK	8	Unmodified	_GVGGGRKK_					0	0	0		ENSG00000215612|ENST00000400677|HMX1	ENSG00000215612|ENST00000400677|HMX1	ENSG00000215612|ENST00000400677|HMX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.4631470270001	1	758.463147	757.455871	1.5334	0.001163	3.5894	0.0027224	5.1228	0.0038854	758.466334644889	28.942	0.072407	28.933	28.909	28.982	-0.0083485	510	43	1.316029	0.02511406	1.3145095	268.35608	0	5.1210938						73	4	2	NaN	NaN	NaN	0.84887	1	4111	4111		0.32989	0.32989	1	7302.9			8397	6000	4881	4975	6610	6610					0.06744085994228044
GVGGGRKK	8	Unmodified						0	0	0		ENSG00000215612|ENST00000400677|HMX1	ENSG00000215612|ENST00000400677|HMX1	ENSG00000215612|ENST00000400677|HMX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	758.463147	757.455871	1.4836	0.0011252	2.5407	0.001927	4.0242	0.0030522	758.4648298446318	28.943	0.096571	28.943	28.918	29.015	0	510	40	1.316029	0.023318887	1.316029	268.35608		4.7550354	0.0045442	-0.00048311	0.00075972	NaN	0.32989	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6356.5			8398	6000	4881	4975							0.06744085994228044
GVGGKATL	8	Unmodified	_GVGGKATL_					0	0	0			REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.4144654999001	1	702.414465	701.407189	1.2796	0.00089878	-10.457	-0.0073449	-9.1771	-0.0064461	702.4071967681342	25.202	0.14479	25.202	25.178	25.322	0	618	64	1.2513325	0.037822247	1.2513325	255.52603	0	7.7234344						142	7	2	NaN	NaN	NaN	0.80071	1	3243	3243		9.1232	0	1	14895	+		8399	8529	4882	4976	6611	6611					0.044541726344732524
GVGGKATL	8	Unmodified						0	0	0			REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	702.414465	701.407189	1.2796	0.00089878	-10.457	-0.0073449	-9.1771	-0.0064461	702.4071967681342	25.202	0.14479	25.202	25.178	25.322	0	618	64	1.2513325	0.037822247	1.2513325	255.52603		7.7234344	0.0061182	0.00070085	-0.00014052	NaN	9.1232	142	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14895	+		8400	8529	4882	4976							0.044541726344732524
GVGGKATL	8	Unmodified						0	0	0			REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	702.414465	701.407189	1.3337	0.00093681	-12.855	-0.0090293	-11.521	-0.0080925	702.4055201904604	25.201	0.14475	25.189	25.165	25.31	-0.012011	615	55	1.2531329	0.03241384	1.2516136	255.8937		6.6190186	-0.0061182	-0.00098351	0.00014052	NaN	9.1232	132	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13482	+		8401	8529	4882	4976							0.044541726344732524
GVGHPVGAA	9	Unmodified	_GVGHPVGAA_					0	0	0			REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.70611995635	2	382.70612	763.397687	1.2342	0.00047235	-3.4874	-0.0013346	-2.2532	-0.0008623	382.7048077888109	29.28	0.12064	29.28	29.232	29.353	0	1374	46	0.791392	0.027752638	0.791392	322.6989	0	11.316437						152	6	3	NaN	NaN	NaN	0.65388	1	4264	4264		3.1533	0	1	18249	+		8402	12164	4883	4977	6612	6612					0.006524043489434916
GVGLAGCP	8	Unmodified	_GVGLAGCP_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3337723379001	1	673.333772	672.326496	0.56025	0.00037723	7.5877	0.005109	8.1479	0.0054863	673.3390910909462	32.2	0.16893	32.196	32.172	32.341	-0.0037613	747	82	1.1737292	0.048847795	1.1722097	239.87753	0	9.9831085						145	8	2	NaN	NaN	NaN	0.84651	1	2571	2571		1.6704	0	1	12680			8403	5537	4884	4978	6613	6613					-0.022774316800678207
GVGLNVVP	8	Unmodified	_GVGLNVVP_					0	0	0		ENST00000581549.1_1_17:70614477-70614528:-|nuORF	ENST00000581549.1_1_17:70614477-70614528:-|nuORF	ENST00000581549.1_1_17:70614477-70614528:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.4457656283	1	754.445766	753.438489	1.2247	0.00092395	8.544	0.006446	9.7686	0.0073699	754.4517384434489	32.732	0.072388	32.732	32.732	32.804	0	525	79	1.3070582	0.046690226	1.3070582	266.55206	0	9.521698						86	4	2	NaN	NaN	NaN	0.83849	1	4125	4125		4.0537	0	1	7442.2			8404	7683	4885	4979	6614	6614					0.05190745668562613
GVGPAKPK	8	Unmodified	_GVGPAKPK_					0	0	0			REV__nc|ENSG00000049540|P15502-8|ELN	REV__nc|ENSG00000049540|P15502-8|ELN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.4617500435	1	753.46175	752.454474	1.6417	0.001237	1.1575	0.00087213	2.7992	0.0021091	753.46276342904	55.46	0.24009	55.46	55.34	55.58	0	498	58	1.3232021	0.03407061	1.3232021	269.85068	0	6.948303						191	11	2	NaN	NaN	NaN	0.84876	1	4110	4110		0.39566	0	1	14815	+		8405	8489	4886	4980	6615	6615					0.06834451905467631
GVGYPQLS	8	Unmodified	_GVGYPQLS_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000560517.1_1_14:24706267-24706794:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.4199448083001	1	820.419945	819.412668	1.8852	0.0015467	-0.33763	-0.000277	1.5476	0.0012697	820.4197836719779	23.971	0.14474	23.971	23.923	24.068	0	510	58	1.316029	0.03407061	1.316029	267.99493	0	6.938141						131	7	2	NaN	NaN	NaN	0.78264	1	5012	5012		11.548	0.94349	1	7693.2			8406	1288	4887	4981	6616	6616					-0.004261485737060866
GVHRELLRFL	10	Unmodified	_GVHRELLRFL_					0	0	0		ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.9155348660334	3	413.915535	1238.72478	1.4742	0.00061021	4.7111	0.00195	6.1853	0.0025602	413.91748543637493	17.33	0.095985	17.316	17.22	17.316	-0.013567	1416	37	0.76547134	0.022234678	0.7639519	465.01276	0	13.507202						97	5	3	NaN	NaN	NaN	0.71559	1	16764	16764		3.5945	0.89035	1	18424			8407	6467	4888	4982	6617	6617					0.1149618017091143
GVICLKKT	8	Unmodified	_GVICLKKT_					0	0	0			REV__nc|ENSG00000116729|Q5T9L3-3|WLS	REV__nc|ENSG00000116729|Q5T9L3-3|WLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	861.5226357408	1	861.522636	860.515359	1.9782	0.0017042	-3.1665	-0.002728	-1.1883	-0.0010238	861.5201138530664	55.701	0.072319	55.701	55.677	55.749	0	285	67	1.4500183	0.039151073	1.4500183	295.04773	0	7.9664						140	4	3	NaN	NaN	NaN	0.84727	1	5540	5540		1.2418	0	1	23545	+		8408	9225	4889	4983	6618	6618					0.07952220893378126
GVICLKKT	8	Unmodified						0	0	0			REV__nc|ENSG00000116729|Q5T9L3-3|WLS	REV__nc|ENSG00000116729|Q5T9L3-3|WLS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	861.522636	860.515359	1.9782	0.0017042	-3.1665	-0.002728	-1.1883	-0.0010238	861.5201138530664	55.701	0.072319	55.701	55.677	55.749	0	285	67	1.4500183	0.039151073	1.4500183	295.04773		7.9664	0.0013985	-0.00097341	0.0016495	NaN	1.2418	140	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23545	+		8409	9225	4889	4983							0.07952220893378126
GVKTYPWKV	9	Unmodified	_GVKTYPWKV_					0	0	0			REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3082095144	2	539.30821	1076.60187	1.0179	0.00054895	-5.7484	-0.0031002	-4.7306	-0.0025512	539.304617413588	20.791	0.096251	20.776	20.752	20.849	-0.014086	1209	52	0.892844	0.031273186	0.8913246	362.196	0	12.686462						84	5	3	NaN	NaN	NaN	0.58159	1	11534	11534		6.2502	0.15988	1	8218.7	+		8410	12135	4890	4984	6619	6619					0.06662923719591163
GVKTYPWKV	9	Unmodified						0	0	0			REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.30821	1076.60187	1.4669	0.00079112	-5.3343	-0.0028768	-3.8674	-0.0020857	539.3049887769846	20.766	0.048216	20.766	20.742	20.79	0	1209	34	0.892844	0.020231187	0.892844	362.196		8.207092	-0.0051708	0.00030411	0.00075972	NaN	6.2502	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5774.4	+		8411	12135	4890	4984							0.06662923719591163
GVKTYPWKV	9	Unmodified						0	0	0			REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	REV__ENST00000427063.6_1_10:29710617-29711127:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.30821	1076.60187	1.0179	0.00054895	-5.7484	-0.0031002	-4.7306	-0.0025512	539.304617413588	20.791	0.096251	20.776	20.752	20.849	-0.014086	1209	52	0.892844	0.031273186	0.8913246	362.196		12.686462	0.0051708	-0.00014256	-0.00075972	NaN	6.2502	84	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8218.7	+		8412	12135	4890	4984							0.06662923719591163
GVLGVLAI	8	Unmodified	_GVLGVLAI_					0	0	0			REV__MRGPRX2|p.G49E|1|0.3|ENSG00000183695|chr11:19056257-19056257|C/T|missense_variant	REV__MRGPRX2|p.G49E|1|0.3|ENSG00000183695|chr11:19056257-19056257|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.4869021614999	1	741.486902	740.479626	-0.2429	-0.0001801	-5.9139	-0.0043851	-6.1568	-0.0045652	741.4824017558966	56.227	0.264	56.226	56.082	56.346	-0.00056458	540	85	1.2980826	0.05024433	1.2965631	264.80453	0	10.249664						246	12	2	NaN	NaN	NaN	0.84876	1	3851	3851		0.39566	0	1	26963	+		8413	10901	4891	4985	6620	6620					0.09900506708015655
GVLLNSPK	8	Unmodified	_GVLLNSPK_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.4985294803001	1	827.498529	826.491253	1.9288	0.001596	-1.059	-0.00087631	0.86977	0.00071973	827.4974186918821	55.124	0.096378	55.124	55.1	55.196	0	423	76	1.3679651	0.044720054	1.3679651	278.53183	0	9.105469						139	5	3	NaN	NaN	NaN	0.84727	1	5102	5102		1.2418	0	1	13455	+		8414	9086	4892	4986	6621	6621					0.07106703731381003
GVLTHASK	8	Unmodified	_GVLTHASK_					0	0	0			REV__nc|ENSG00000070814|Q13428-8|TCOF1	REV__nc|ENSG00000070814|Q13428-8|TCOF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.462478325	1	812.462478	811.455202	1.3716	0.0011144	-9.1037	-0.0073964	-7.7321	-0.006282	812.4553886725099	33.19	0.19306	33.19	33.142	33.335	0	438	73	1.359022	0.042942762	1.359022	276.79477	0	8.746216						276	9	3	NaN	NaN	NaN	0.82797	1	4913	4913		5.4659	0.55612	1	40184	+		8415	8573	4893	4987	6622	6622					0.04193246554507368
GVPAKPRQ	8	Unmodified	_GVPAKPRQ_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.5050118417001	1	852.505012	851.497735	0.95145	0.00081111	6.1316	0.0052272	7.083	0.0060383	852.5087805214079	29.979	0.096516	29.973	29.949	30.045	-0.0064087	63	67	1.5811787	0.038853288	1.5796592	321.7896	0	7.907135						102	5	2	NaN	NaN	NaN	0.84876	1	5278	5278		0.39566	0	1	9742.1	+		8416	9425	4894	4988	6623	6623					0.06604641682758938
GVPFLNIYLF	10	Unmodified	_GVPFLNIYLF_					0	0	0		ENST00000254998.2_1_20:23335152-23335317:+|nuORF	ENST00000254998.2_1_20:23335152-23335317:+|nuORF	ENST00000254998.2_1_20:23335152-23335317:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8315174351999	2	591.831517	1181.64848	1.4458	0.00085569	-4.116	-0.002436	-2.6702	-0.0015803	591.8288286498279	23.995	0.12059	23.995	23.971	24.092	0	1014	136	1.0119673	0.08211535	1.0119673	410.05884	0	33.273895						383	6	4	NaN	NaN	NaN	0.77884	1	15893	15893		0.79988	0.20265	1	50901			8417	6286	4895	4989	6624	6624					0.06492363550864866
GVPHEAFLEHH	11	Unmodified	_GVPHEAFLEHH_					0	0	0		ENST00000423473.6_1_17:20898860-20901274:+|nuORF	ENST00000423473.6_1_17:20898860-20901274:+|nuORF	ENST00000423473.6_1_17:20898860-20901274:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8096362876502	2	636.809636	1271.60472	2.1827	0.00139	-6.4295	-0.0040944	-4.2468	-0.0027044	636.8066529316009	25.37	0.24127	25.358	25.31	25.551	-0.012011	1101	103	0.95892316	0.062300503	0.9574037	388.24747	0	25.224121						584	11	4	NaN	NaN	NaN	0.51407	1	17449	17449		17.97	0.17071	1	75016			8418	6928	4896	4990	6625	6625					-0.020218528935174618
GVPSKPAK	8	Unmodified	_GVPSKPAK_					0	0	0			REV__ENSG00000261701|ENST00000540303|HPR	REV__ENSG00000261701|ENST00000540303|HPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4723147298	1	783.472315	782.465038	1.8511	0.0014503	-2.0904	-0.0016378	-0.23936	-0.00018753	783.4704358583459	55.677	0.14449	55.677	55.653	55.797	0	492	58	1.3267875	0.034056187	1.3267875	270.3961	0	6.9405518						143	7	2	NaN	NaN	NaN	0.84692	1	4533	4533		1.4396	0	1	15995	+		8419	11396	4897	4991	6626	6626					0.0651043455989111
GVQPGGGP	8	Unmodified	_GVQPGGGP_					0	0	0		IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3362151789	1	668.336215	667.328939	-0.09702	-6.4842E-05	-1.8371	-0.0012278	-1.9341	-0.0012926	668.337501781651	46.412	0.14399	46.422	46.398	46.542	0.0098152	495	58	1.3249949	0.03406334	1.3234755	270.8325	0	6.962677						250	7	3	NaN	NaN	NaN	0.84692	1	2438	2438		1.4396	0	1	25124			8420	7822	4898	4992	6627	6627					-0.01803259950759184
GVQPGGGP	8	Unmodified						0	0	0		IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	IGSF8|p.R511Q|1|0.21|ENSG00000162729|chr1:160092476-160092476|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	668.336215	667.328939	1.5386	0.0010283	-3.4026	-0.0022741	-1.864	-0.0012458	668.3357850220015	46.557	0.11982	46.557	46.509	46.629	0	501	61	1.3214091	0.035858154	1.3214091	270.09955		7.3294983	0.06784	-0.00056756	-0.0010332	NaN	1.4396	136	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14453			8421	7822	4898	4992							-0.01803259950759184
GVRGHSTT	8	Unmodified	_GVRGHSTT_					0	0	0			REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF	REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.4165907649	1	814.416591	813.409314	1.6818	0.0013697	3.2337	0.0026336	4.9155	0.0040033	814.4192540616918	15.244	0.16797	15.232	15.184	15.352	-0.012201	1575	40	0.6669854	0.024225235	0.66546595	135.8408	0	4.9338074						136	8	3	NaN	NaN	NaN	0.84756	1	4828	4828		1.072	0.67635	1	12485	+		8422	8978	4899	4993	6628	6628					-0.004853986277225886
GVSAAGHS	8	Unmodified	_GVSAAGHS_					0	0	0		ENST00000377710.9_1_20:17949590-17949680:+|nuORF	ENST00000377710.9_1_20:17949590-17949680:+|nuORF	ENST00000377710.9_1_20:17949590-17949680:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.1668276203499	2	343.166828	684.319102	1.8038	0.000619	-10.13	-0.0034764	-8.3267	-0.0028575	343.16330472793214	38.946	0.12013	38.951	38.879	38.999	0.0046844	1524	37	0.698637	0.022321641	0.69711757	285.4559	0	9.120422						92	6	2	NaN	NaN	NaN	0.8439	1	2845	2845		3.1533	0	1	8052.2			8423	6710	4900	4994	6629	6629					-0.035684479561609805
GVSAGVIVM	9	Unmodified	_GVSAGVIVM_					0	0	0			REV__ENSG00000269556|ENST00000600449|TMEM185A	REV__ENSG00000269556|ENST00000600449|TMEM185A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.7334887998	2	416.733489	831.452425	1.6886	0.00070369	-2.9456	-0.0012275	-1.257	-0.00052384	416.7319551767688	16.062	0.19194	16.062	16.038	16.23	0	1407	40	0.77102906	0.02407837	0.77102906	313.94217	0	9.804047						144	9	2	NaN	NaN	NaN	0.39244	1	5157	5157		14.042	0.57854	1	23841	+		8424	11409	4901	4995	6630	6630					0.0299565510534876
GVSAGVIVM	9	Unmodified						0	0	0			REV__ENSG00000269556|ENST00000600449|TMEM185A	REV__ENSG00000269556|ENST00000600449|TMEM185A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	416.733489	831.452425	1.6886	0.00070369	-2.9456	-0.0012275	-1.257	-0.00052384	416.7319551767688	16.062	0.19194	16.062	16.038	16.23	0	1407	40	0.77102906	0.02407837	0.77102906	313.94217		9.804047	-0.0042721	-0.00042112	-0.00016637	NaN	14.042	144	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23841	+		8425	11409	4901	4995							0.0299565510534876
GVSGPSWLQPP	11	Unmodified	_GVSGPSWLQPP_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.790380902	2	562.790381	1123.56621	1.8849	0.0010608	-10.795	-0.0060752	-8.9098	-0.0050144	562.7836771965884	15.774	0.16795	15.774	15.702	15.87	0	1230	49	0.8799654	0.029444695	0.8799654	356.78305	0	11.938416						224	8	4	NaN	NaN	NaN	0.7072	1	13824	13824		6.9844	2.2553	1	34883			8426	2851	4902	4996	6631	6631					0.009368414719347129
GVSGPSWLQPP	11	Unmodified						0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.790381	1123.56621	1.9896	0.0011197	-11.629	-0.0065445	-9.639	-0.0054248	562.7831170340088	15.82	0.23945	15.807	15.735	15.975	-0.012611	1230	49	0.8799654	0.029444695	0.878446	356.78305		11.938416	0.016502	-0.00053529	-0.00075972	NaN	6.9844	280	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44707			8427	2851	4902	4996							0.009368414719347129
GVSIPQHRGQ	10	Unmodified	_GVSIPQHRGQ_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.19658986836663	3	360.19659	1077.56794	2.9998	0.0010805	1.7492	0.00063004	4.7489	0.0017106	360.19753012078826	18.122	0.071991	18.108	18.084	18.156	-0.013948	1500	37	0.71351165	0.02230227	0.7119922	434.1605	0	13.570618						44	4	2	NaN	NaN	NaN	0.72631	1	11562	11562		2.9701	0	1	3347	+		8428	9798	4903	4997	6632	6632					0.03225895280547775
GVSVGDPVL	9	Unmodified	_GVSVGDPVL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.461809623	1	842.46181	841.454533	1.2664	0.0010669	0.41444	0.00034915	1.6808	0.001416	842.4624131437517	24.406	0.09651	24.406	24.357	24.454	0	447	61	1.3536539	0.03578937	1.3536539	275.53775	0	7.284973						147	5	3	NaN	NaN	NaN	0.04947	1	5283	5283		47.136	12.697	1	15175			8429	1965	4904	4998	6633	6633					0.027464071148074254
GVSVGDPVL	9	Unmodified	_GVSVGDPVL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.461809623	1	842.46181	841.454533	1.0551	0.00088884	0.79207	0.00066729	1.8471	0.0015561	842.462320795737	24.405	0.072384	24.393	24.368	24.441	-0.012747	450	70	1.3518641	0.041159987	1.3503447	275.17343	0	8.378174						120	4	2	NaN	NaN	NaN	0.12328	1	5152	5152		32.453	13.334	1	13520			8430	1965	4904	4998	6634	6634					0.027464071148074254
GVYLSSAATP	10	Unmodified	_GVYLSSAATP_					0	0	0		ENSG00000127530|ENST00000641666|OR7C1	ENSG00000127530|ENST00000641666|OR7C1	ENSG00000127530|ENST00000641666|OR7C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.25055724975	2	483.250557	964.486562	2.1453	0.0010367	-2.0988	-0.0010142	0.046484	2.2463E-05	483.24981008021143	17.066	0.21594	17.053	17.005	17.221	-0.013294	1281	67	0.84864825	0.040587306	0.8471288	344.7724	0	16.489044						294	10	4	NaN	NaN	NaN	0.68669	1	7311	7311		8.962	0.67169	1	44534			8431	2538	4905	4999	6635	6635					0.002897747979545784
GWAPGPGPITS	11	Unmodified	_GWAPGPGPITS_					0	0	0		ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5207214854	1	1039.52072	1038.51345	1.5043	0.0015638	-10.385	-0.010796	-8.881	-0.009232	1039.509833532157	28.701	0.096535	28.701	28.677	28.774	0	165	85	1.5210435	0.049601793	1.5210435	308.6643	0	10.065674						117	5	2	NaN	NaN	NaN	0.57804	1	10130	10130		15.463	1.0377	1	10734			8432	1714	4906	5000	6636	6636					-0.0042711659086762666
GWAPGPGPITS	11	Unmodified						0	0	0		ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1039.52072	1038.51345	1.2109	0.0012587	-10.662	-0.011083	-9.4512	-0.0098247	1039.5106543560405	28.701	0.096516	28.692	28.668	28.765	-0.0083504	165	70	1.5210435	0.04074216	1.5195241	308.6643		8.267792	-0.0045432	-0.00013147	-0.00075972	NaN	15.463	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8841.2			8433	1714	4906	5000							-0.0042711659086762666
GWGAACWG	8	Unmodified	_GWGAACWG_					0	0	0		ENST00000592094.1_1_17:41454936-41458731:-|nuORF;ENST00000592135.5_1_17:41454936-41458699:-|nuORF	ENST00000592094.1_1_17:41454936-41458731:-|nuORF	ENST00000592094.1_1_17:41454936-41458731:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.16577337535	2	404.165773	806.316994	1.693	0.00068426	7.9101	0.003197	9.6031	0.0038813	404.1695535161101	28.99	0.38613	28.982	28.91	29.296	-0.0077229	1443	88	0.7487872	0.05380076	0.7472678	305.03992	0	21.917297						964	17	5	NaN	NaN	NaN	0.84651	1	4740	4740		1.6704	0.16496	1	683350			8434	7735	4907	5001	6637	6637					-0.09391199965602937
GWGAGPPP	8	Unmodified	_GWGAGPPP_					0	0	0		ENST00000565639.6_1_16:2156945-2164479:-|nuORF	ENST00000565639.6_1_16:2156945-2164479:-|nuORF	ENST00000565639.6_1_16:2156945-2164479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.356950621	1	738.356951	737.349674	0.1532	0.00011312	-3.9157	-0.0028912	-3.7625	-0.0027781	738.3532412518283	58.243	0.095905	58.242	58.218	58.314	-0.00048065	447	52	1.3536539	0.030422568	1.3521345	276.16217	0	6.206604						81	5	2	NaN	NaN	NaN	0.84876	1	3799	3799		0.39566	0	1	4876.2			8435	7621	4908	5002	6638	6638					-0.029506695711006614
GWGAGPPP	8	Unmodified	_GWGAGPPP_					0	0	0		ENST00000565639.6_1_16:2156945-2164479:-|nuORF	ENST00000565639.6_1_16:2156945-2164479:-|nuORF	ENST00000565639.6_1_16:2156945-2164479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.356950621	1	738.356951	737.349674	-0.15141	-0.0001118	-2.6372	-0.0019472	-2.7886	-0.002059	738.3551748471609	58.123	0.11994	58.122	58.05	58.17	-0.00048447	441	52	1.3572328	0.03041935	1.3557134	276.89233	0	6.2059326						121	6	2	NaN	NaN	NaN	0.84651	1	3801	3801		1.6704	0	1	9571.1			8436	7621	4908	5002	6639	6639					-0.029506695711006614
GWGGGGQP	8	Unmodified	_GWGGGGQP_					0	0	0			REV__ENSG00000171867|ENST00000379440|PRNP	REV__ENSG00000171867|ENST00000379440|PRNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.1615452772	2	358.161545	714.308538	1.1986	0.00042931	-4.0335	-0.0014447	-2.8349	-0.0010153	358.15981888652414	30.873	0.096497	30.873	30.825	30.922	0	1464	31	0.73579943	0.018563092	0.73579943	300.39316	0	7.57843						55	5	2	NaN	NaN	NaN	0.84876	1	3497	3497		0.39566	0	1	3331	+		8437	10638	4909	5003	6640	6640					-0.06004430610573763
GWGMAGAC	8	Unmodified	_GWGMAGAC_					0	0	0		ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.2854419368	1	752.285442	751.278165	-0.093948	-7.0675E-05	-6.4288	-0.0048363	-6.5228	-0.004907	752.2803206812589	53.778	0.28858	53.777	53.753	54.041	-0.00059128	444	103	1.3554435	0.060841918	1.353924	276.4337	0	12.408325						522	13	2	NaN	NaN	NaN	0.84876	1	4000	4000		0.39566	0	1	85182			8438	7759	4910	5004	6641	6641					-0.10742248591634507
GWGSPSEEDLL	11	Unmodified	_GWGSPSEEDLL_					0	0	0		PRSS27-TPSB2|1|fusion;ENSG00000172382|ENST00000302641|PRSS27	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2722179386001	2	595.272218	1188.52988	0.5152	0.00030669	-7.2876	-0.0043381	-6.7724	-0.0040314	595.2677010671509	31.211	0.24129	31.211	31.091	31.332	0	1185	70	0.90755045	0.042269647	0.90755045	367.72357	0	17.126923						269	11	2	NaN	NaN	NaN	0.57804	1	16101	16101		15.463	1.4211	1	33487			8439	8104	4911	5005	6642	6642					-0.05684080215405629
GWHHICLH	8	Unmodified	_GWHHICLH_					0	0	0		ENST00000289902.1_1_1:161188744-161188861:+|nuORF	ENST00000289902.1_1_1:161188744-161188861:+|nuORF	ENST00000289902.1_1_1:161188744-161188861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.7399711612	2	501.739971	1001.46539	1.6843	0.00084508	-4.7057	-0.002361	-3.0214	-0.001516	501.73726951381207	19.42	0.095991	19.42	19.396	19.492	0	1332	43	0.8172735	0.02586186	0.8172735	331.85373	0	10.50119						124	5	4	NaN	NaN	NaN	0.83849	1	8641	8641		4.0537	0.085174	1	15453			8440	6380	4912	5006	6643	6643					-0.03528468991896716
GWRRGGRFGP	10	Unmodified	_GWRRGGRFGP_					0	0	0		ENST00000345057.8_1_16:67188417-67189138:-|nuORF	ENST00000345057.8_1_16:67188417-67189138:-|nuORF	ENST00000345057.8_1_16:67188417-67189138:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.3073981599501	2	573.307398	1144.60024	1.8854	0.0010809	-4.939	-0.0028316	-3.0536	-0.0017507	573.3044366877905	16.973	0.071985	16.973	16.973	17.045	0	1188	37	0.90571284	0.022052526	0.90571284	367.14056	0	8.9392395						52	4	2	NaN	NaN	NaN	0.77513	1	14613	14613		1.7022	0.19679	1	4734.7			8441	6553	4913	5007	6644	6644					0.0337272747424322
GWWHRRTHFWR	11	Unmodified	_GWWHRRTHFWR_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2763486232	3	542.276349	1623.80722	1.8152	0.00098434	-9.8597	-0.0053467	-8.0445	-0.0043623	542.2710304998661	25.322	0.14475	25.322	25.274	25.419	0	1302	88	0.8357362	0.0534696	0.8357362	506.37036	0	32.397125						242	7	4	NaN	NaN	NaN	0.77633	1	20775	20775		0.88464	0.17642	1	29950			8442	6485	4914	5008	6645	6645					0.02026515022384956
GWWYQLMQS	9	Unmodified	_GWWYQLMQS_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.77113390385	2	599.771134	1197.52771	0.73239	0.00043927	-10.686	-0.0064089	-9.9532	-0.0059697	599.7633539491213	28.869	0.16894	28.861	28.813	28.982	-0.0083504	1161	91	0.9222442	0.055119455	0.92072475	373.64502	0	22.331543						256	8	2	NaN	NaN	NaN	0.49672	1	15731	15731		9.746	2.7616	1	25482			8443	5825	4915	5009	6646	6646					-0.06314787434234859
GWYDEEHPLVF	11	Unmodified	_GWYDEEHPLVF_					0	0	0		LRP5-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;LRP5-CLPB|2|fusion;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	LRP5-CLPB|1|fusion	LRP5-CLPB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.31695979325	2	696.31696	1390.61937	1.6046	0.0011173	-2.5514	-0.0017766	-0.9468	-0.00065928	696.3156612682834	28.388	0.24134	28.388	28.339	28.581	0	1092	67	0.9644182	0.040277243	0.9644182	390.113	0	16.29242						390	11	4	NaN	NaN	NaN	2.7378E-07	1	19983	19983		113.18	99.234	1	93695			8444	4119	4916	5010	6647	6647					-0.060318255360471085
GWYDEEHPLVF	11	Unmodified	_GWYDEEHPLVF_					0	0	0		LRP5-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;LRP5-CLPB|2|fusion;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	LRP5-CLPB|1|fusion	LRP5-CLPB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.31695979325	2	696.31696	1390.61937	0.90832	0.00063248	-3.1925	-0.002223	-2.2842	-0.0015905	696.3144144896821	28.387	0.21717	28.378	28.33	28.547	-0.0089779	1092	67	0.9644182	0.040277243	0.96289873	390.113	0	16.29242						387	10	5	NaN	NaN	NaN	0.0071196	1	19046	19046		85.344	71.303	1	89933			8445	4119	4916	5010	6648	6648					-0.060318255360471085
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.276575035	2	496.276575	990.538597	1.2787	0.00063457	-2.7174	-0.0013486	-1.4388	-0.00071402	496.27521834948044	33.19	0.24133	33.19	33.142	33.383	0	1266	52	0.85786515	0.031330705	0.85786515	348.388	0	12.723724						360	11	5	NaN	NaN	NaN	0.025843	1	8241	8241		64.55	14.589	1	178590			8446	2912	4917	5011	6649	6649					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5458736034001	1	991.545874	990.538597	1.832	0.0018165	1.8731	0.0018573	3.7051	0.0036737	991.5465527859506	33.19	0.43437	33.19	33.069	33.504	0	156	175	1.5263584	0.102888465	1.5263584	309.93933	0	20.892334						1337	19	5	NaN	NaN	NaN	0.0094682	1	8245	8245		93.472	20.339	1	397600			8447	2912	4917	5011	6650	6650					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.276575035	2	496.276575	990.538597	0.81875	0.00040633	-1.7888	-0.00088775	-0.97008	-0.00048143	496.2757842022889	33.189	0.21718	33.186	33.138	33.355	-0.0024796	1266	52	0.85786515	0.031327307	0.8563457	348.388	0	12.722351						385	10	5	NaN	NaN	NaN	0.023828	1	8070	8070		67.154	5.883	1	184800			8448	2912	4917	5011	6651	6651					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5458736034001	1	991.545874	990.538597	1.6092	0.0015956	1.3749	0.0013633	2.9841	0.0029589	991.5460248386848	33.189	0.21712	33.186	33.09	33.307	-0.0024796	153	169	1.5281296	0.09931958	1.5266101	310.299	0	20.167633						1045	10	5	NaN	NaN	NaN	0.018156	1	8074	8074		74.332	16.096	1	344930			8449	2912	4917	5011	6652	6652					0.04294938211717181
GYADLVKSY	9	Unmodified	_GYADLVKSY_					0	0	0			REV__nc|ENSG00000159082|O43426-5|SYNJ1	REV__nc|ENSG00000159082|O43426-5|SYNJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.25838228185	2	508.258382	1014.50221	0.77433	0.00039356	-6.374	-0.0032396	-5.5996	-0.0028461	508.25528746683693	33.189	0.12067	33.186	33.138	33.259	-0.0024796	1281	55	0.84864825	0.033186257	0.8471288	344.53342	0	13.4729						106	6	3	NaN	NaN	NaN	0.2345	1	8974	8974		23.118	9.076	1	9605.4	+		8450	10178	4918	5012	6653	6653					-0.0044593868499305245
GYADLVKSY	9	Unmodified						0	0	0			REV__nc|ENSG00000159082|O43426-5|SYNJ1	REV__nc|ENSG00000159082|O43426-5|SYNJ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.258382	1014.50221	1.049	0.00053314	-6.9047	-0.0035094	-5.8558	-0.0029762	508.25453262930097	33.19	0.12066	33.19	33.166	33.287	0	1284	64	0.8468043	0.03871101	0.8468043	343.78482		15.715851	0.0019056	-0.00033108	-0.00016227	NaN	23.118	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9083.4	+		8451	10178	4918	5012							-0.0044593868499305245
GYADLVKSY	9	Unmodified						0	0	0			REV__nc|ENSG00000159082|O43426-5|SYNJ1	REV__nc|ENSG00000159082|O43426-5|SYNJ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.258382	1014.50221	0.77433	0.00039356	-6.374	-0.0032396	-5.5996	-0.0028461	508.25528746683693	33.189	0.12067	33.186	33.138	33.259	-0.0024796	1281	55	0.84864825	0.033186257	0.8471288	344.53342		13.4729	-0.0019056	0.00020844	0.00016227	NaN	23.118	106	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9605.4	+		8452	10178	4918	5012							-0.0044593868499305245
GYADTDLF	8	Unmodified	_GYADTDLF_					0	0	0		ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.3937896373	1	901.39379	900.386513	2.0946	0.0018881	-1.2013	-0.0010829	0.89329	0.00080521	901.3929012303449	24.574	0.096443	24.562	24.514	24.61	-0.012392	405	46	1.3786905	0.026800632	1.377171	280.3386	0	5.4495544						66	5	2	NaN	NaN	NaN	0.8439	1	5967	5967		3.1533	0	1	4024.2			8453	7319	4919	5013	6654	6654					-0.06766462535858864
GYAFTLPLF	9	Unmodified	_GYAFTLPLF_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5451453219	1	1028.54515	1027.53787	1.1838	0.0012176	0.79539	0.0008181	1.9792	0.0020357	1028.5453480406927	37.602	0.16851	37.602	37.554	37.723	0	81	85	1.5705823	0.049481153	1.5705823	318.76172	0	10.0425415						316	8	3	NaN	NaN	NaN	0.021781	1	9676	9676		69.745	13.797	1	38905			8454	6111	4920	5014	6655	6655					0.02520143562674093
GYAFTLPLF	9	Unmodified	_GYAFTLPLF_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5451453219	1	1028.54515	1027.53787	1.1908	0.0012248	0.44885	0.00046166	1.6397	0.0016865	1028.545508371258	37.6	0.14442	37.603	37.555	37.699	0.0028267	75	76	1.5741152	0.044167757	1.5725957	319.47876	0	8.964203						260	7	3	NaN	NaN	NaN	0.01663	1	9488	9488		76.264	20.316	1	31981			8455	6111	4920	5014	6656	6656					0.02520143562674093
GYAGSWVSI	9	Unmodified	_GYAGSWVSI_					0	0	0		ENST00000531831.5_1_1:155023862-155026718:+|nuORF;ENST00000480331.5_1_1:155023340-155028240:+|nuORF;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15	ENST00000531831.5_1_1:155023862-155026718:+|nuORF	ENST00000531831.5_1_1:155023862-155026718:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4570585961	1	939.457059	938.449782	1.492	0.0014016	-1.0396	-0.00097661	0.4524	0.00042501	939.4560865788955	27.567	0.28959	27.567	27.519	27.808	0	366	61	1.4019053	0.035690427	1.4019053	284.88492	0	7.252777						397	13	4	NaN	NaN	NaN	0.028349	1	6779	6779		61.271	24.685	1	75191			8456	3432	4921	5015	6657	6657					-0.021904770279661534
GYAGSWVSI	9	Unmodified	_GYAGSWVSI_					0	0	0		ENST00000531831.5_1_1:155023862-155026718:+|nuORF;ENST00000480331.5_1_1:155023340-155028240:+|nuORF;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15	ENST00000531831.5_1_1:155023862-155026718:+|nuORF	ENST00000531831.5_1_1:155023862-155026718:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4570585961	1	939.457059	938.449782	1.6152	0.0015174	-0.83261	-0.0007822	0.78258	0.0007352	939.4564682918735	27.59	0.28956	27.581	27.533	27.822	-0.009552	363	70	1.4036897	0.04104185	1.4021703	285.24753	0	8.3402405						419	13	4	NaN	NaN	NaN	0.043119	1	6641	6641		49.833	10.374	1	76471			8457	3432	4921	5015	6658	6658					-0.021904770279661534
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.27162704285	2	532.271627	1062.5287	0.648	0.00034491	-2.2929	-0.0012204	-1.6449	-0.00087554	532.2710966211047	30.607	0.072348	30.601	30.529	30.601	-0.0057545	1230	58	0.8799654	0.034971297	0.878446	357.0313	0	14.189026						94	4	3	NaN	NaN	NaN	0.36886	1	10975	10975		15.013	2.9642	1	10570			8458	3804	4922	5016	6659	6659					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.27162704285	2	532.271627	1062.5287	0.52066	0.00027713	-1.2353	-0.00065751	-0.71462	-0.00038037	532.7721647326574	30.414	0.2172	30.407	30.311	30.528	-0.0064106	1233	67	0.87812483	0.04050398	0.8766054	356.28452	0	16.433807						243	10	2	NaN	NaN	NaN	0.36886	1	10976	10976		15.013	5.8897	1	36081			8459	3804	4922	5016	6660	6660					-6.205003023751487E-05
GYAHWIGLF	9	Unmodified	_GYAHWIGLF_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.27162704285	2	532.271627	1062.5287	1.1963	0.00063674	0.43482	0.00023144	1.6311	0.00086819	532.2720956618858	29.497	0.38603	29.49	29.393	29.779	-0.0070648	1230	106	0.8799654	0.06442779	0.878446	357.0313	0	26.140472						988	17	5	NaN	NaN	NaN	0.055365	1	10978	10978		44.632	13.071	1	447320			8460	3804	4922	5016	6661	6661					-6.205003023751487E-05
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2925594502001	2	513.292559	1024.57057	2.3258	0.0011938	-2.5199	-0.0012934	-0.19411	-9.9637E-05	513.2910262674693	25.395	0.24127	25.395	25.298	25.539	0	1251	76	0.8670771	0.046069622	0.8670771	351.9688	0	18.700836						292	11	3	NaN	NaN	NaN	0.084037	1	9568	9568		38.131	13.569	1	69132			8461	3813	4923	5017	6662	6662					0.05926350685513171
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2925594502001	2	513.292559	1024.57057	1.7274	0.00088666	-0.4135	-0.00021225	1.3139	0.00067441	513.2922754692144	25.443	0.24128	25.431	25.382	25.624	-0.012011	1254	67	0.8652351	0.040534675	0.86371565	351.2211	0	16.45404						314	11	5	NaN	NaN	NaN	0.12866	1	9384	9384		31.675	7.1134	1	66989			8462	3813	4923	5017	6663	6663					0.05926350685513171
GYDDTDES	8	Unmodified	_GYDDTDES_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.305762491	1	901.305762	900.298486	1.9991	0.0018018	-2.8506	-0.0025693	-0.8515	-0.00076746	901.3031812284003	11.932	0.192	11.932	11.908	12.1	0	1023	124	1.0064877	0.07489675	1.0064877	204.65636	0	15.229294						379	9	2	NaN	NaN	NaN	0.82332	1	6086	6086		6.0903	0	1	77209			8463	3609	4924	5018	6664	6664					-0.1556512791712521
GYDHMDCLVL	10	Unmodified	_GYDHMDCLVL_					0	0	0			REV__MLT1L_dup10991|chr19:48704452-48704884:-|1.2309206652476363|0.1256829385754321|3.29|511.0|14|3|sense	REV__MLT1L_dup10991|chr19:48704452-48704884:-|1.2309206652476363|0.1256829385754321|3.29|511.0|14|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.2544593844	2	583.254459	1164.49437	2.1996	0.0012829	-0.15796	-9.2129E-05	2.0417	0.0011908	583.2547158987732	23.32	0.14469	23.32	23.248	23.393	0	1218	70	0.8873258	0.042297065	0.8873258	359.61398	0	17.14209						180	7	3	NaN	NaN	NaN	0.67523	1	15288	15288		9.746	0.13435	1	20863	+		8464	13071	4925	5019	6665	6665					-0.08130157268442417
GYDLTFWYFM	10	Unmodified	_GYDLTFWYFM_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.1986085883	3	448.198609	1341.574	1.5981	0.00071628	1.5382	0.00068942	3.1363	0.0014057	448.19897606907324	37.407	0.072174	37.41	37.338	37.41	0.0028229	1401	25	0.77473325	0.014818251	0.7732138	470.24197	0	8.994263						45	4	2	NaN	NaN	NaN	0.75966	1	18564	18564		1.6985	0	1	2863.4			8465	7176	4926	5020	6666	6666					-0.08312767322809123
GYFCGGCC	8	Unmodified	_GYFCGGCC_					0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.2415282116001	1	809.241528	808.234252	1.0289	0.00083263	-7.4856	-0.0060576	-6.4567	-0.005225	809.2362142733881	35.265	0.096539	35.265	35.217	35.313	0	594	61	1.265731	0.035977006	1.265731	257.8111	0	7.328003						87	5	2	NaN	NaN	NaN	0.84876	1	4858	4858		0.39566	0	1	6574.7	+		8466	10408	4927	5021	6667	6667					-0.1775360108026689
GYFCGGCC	8	Unmodified						0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.241528	808.234252	1.0289	0.00083263	-7.4856	-0.0060576	-6.4567	-0.005225	809.2362142733881	35.265	0.096539	35.265	35.217	35.313	0	594	61	1.265731	0.035977006	1.265731	257.8111		7.328003	0.097264	0.00035504	-0.0037367	NaN	0.39566	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6574.7	+		8467	10408	4927	5021							-0.1775360108026689
GYFCGGCC	8	Unmodified						0	0	0			REV__ENSG00000165929|ENST00000435962|TC2N	REV__ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.241528	808.234252	1.7431	0.0014106	-8.4184	-0.0068125	-6.6753	-0.0054019	809.2344849740372	35.07	0.096516	35.07	35.022	35.119	-4.5776E-05	579	49	1.2747238	0.028772473	1.2732043	259.64282		5.8605347	-0.097264	-0.00039984	0.0037367	NaN	0.39566	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4736.2	+		8468	10408	4927	5021							-0.1775360108026689
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.4829389956	1	1094.48294	1093.47566	1.3316	0.0014574	1.9079	0.0020881	3.2395	0.0035456	1094.483743052342	33.48	0.21706	33.48	33.431	33.648	0	105	82	1.5564433	0.047746778	1.5564433	315.63974	0	9.682831						369	10	3	NaN	NaN	NaN	0.01047	1	12523	12523		91.429	58.003	1	50851			8469	2452	4928	5022	6668	6668					-0.06733627576318213
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.4829389956	1	1094.48294	1093.47566	0.82758	0.00090577	1.9536	0.0021381	2.7811	0.0030439	1094.4835103949579	33.478	0.1931	33.476	33.428	33.621	-0.0018501	105	91	1.5564433	0.053043485	1.5549239	315.63974	0	10.756989						357	9	3	NaN	NaN	NaN	0.011942	1	12209	12209		87.021	55.46	1	47741			8470	2452	4928	5022	6669	6669					-0.06733627576318213
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2587166328501	2	529.258717	1056.50288	2.0202	0.0010692	-1.5358	-0.00081284	0.4844	0.00025637	529.257673517023	19.54	0.21605	19.54	19.492	19.708	0	1296	79	0.8394264	0.047946036	0.8394264	340.60812	0	19.454742						534	10	5	NaN	NaN	NaN	0.025843	1	10933	10933		64.55	42.424	1	130770			8471	584	4929	5023	6670	6670					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2587166328501	2	529.258717	1056.50288	1.3309	0.00070437	-0.23511	-0.00012443	1.0958	0.00057994	529.2582969324874	19.563	0.24071	19.549	19.476	19.717	-0.014141	1296	79	0.8394264	0.04795128	0.83790696	340.60812	0	19.456848						545	11	4	NaN	NaN	NaN	0.043119	1	10708	10708		49.833	33.249	1	123390			8472	584	4929	5023	6671	6671					-0.023110992452757273
GYFKWEQTL	9	Unmodified	_GYFKWEQTL_					0	0	0		ENST00000568805.5_1_16:20809048-20811281:-|nuORF;nc|ENSG00000196678|A8K979-2|ERI2;ENSG00000196678|ENST00000357967|ERI2	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.2927564154501	2	586.292756	1170.57096	1.625	0.00095272	-0.21735	-0.00012743	1.4076	0.00082529	586.2945131266573	24.743	0.16891	24.743	24.695	24.864	0	1173	73	0.91489893	0.044105053	0.91489893	370.76627	0	17.873749						98	8	3	NaN	NaN	NaN	0.052553	1	15506	15506		45.827	18.78	1	15753			8473	5652	4930	5024	6672	6672					-0.007502743852910498
GYGFTTDLF	9	Unmodified	_GYGFTTDLF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.4672889313999	1	1020.46729	1019.46001	1.7857	0.0018222	-0.63781	-0.00065087	1.1479	0.0011713	1020.4663370112819	31.235	0.16891	31.235	31.211	31.38	0	141	70	1.5352125	0.040720582	1.5352125	311.61584	0	8.265411						263	8	2	NaN	NaN	NaN	0.078597	1	9335	9335		38.918	11.129	1	50374			8474	4694	4931	5025	6673	6673					-0.04893914093395324
GYGFTTDLF	9	Unmodified	_GYGFTTDLF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.4672889313999	1	1020.46729	1019.46001	1.3706	0.0013986	-0.21181	-0.00021615	1.1588	0.0011825	1020.4672850362764	31.234	0.19306	31.229	31.181	31.374	-0.0050716	138	79	1.5369828	0.046034336	1.5354633	311.9752	0	9.344025						271	9	2	NaN	NaN	NaN	0.056273	1	9147	9147		44.247	19.286	1	51380			8475	4694	4931	5025	6674	6674					-0.04893914093395324
GYGFVFTF	8	Unmodified	_GYGFVFTF_					0	0	0		MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.4454312773	1	937.445431	936.438155	1.288	0.0012074	-2.0537	-0.0019252	-0.76569	-0.00071779	937.4421030062181	34.758	0.096527	34.758	34.734	34.831	0	264	43	1.4624695	0.024890542	1.4624695	297.20157	0	5.0582275						91	5	2	NaN	NaN	NaN	0.74197	1	6751	6751		16.436	5.3458	1	7198.1			8476	3750	4932	5026	6675	6675					-0.03260674051296064
GYGFVFTF	8	Unmodified	_GYGFVFTF_					0	0	0		MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	937.4454312773	1	937.445431	936.438155	1.942	0.0018205	-2.0138	-0.0018879	-0.07182	-6.7328E-05	937.4432109928325	34.757	0.096367	34.756	34.732	34.828	-0.0006485	258	46	1.4660252	0.026666999	1.4645058	297.92416	0	5.41922						85	5	2	NaN	NaN	NaN	0.74197	1	6609	6609		16.436	1.4236	1	6694.5			8477	3750	4932	5026	6676	6676					-0.03260674051296064
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	875.3682435888	1	875.368244	874.360967	1.5004	0.0013134	-0.23764	-0.00020802	1.2628	0.0011054	875.3678191337899	24.309	0.36183	24.309	24.261	24.623	0	435	124	1.360811	0.073364496	1.360811	276.827	0	14.924377						682	16	4	NaN	NaN	NaN	0.024986	1	5728	5728		65.672	18.351	1	152820			8478	2008	4933	5027	6677	6677					-0.08123892267622068
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.3682435888	1	875.368244	874.360967	1.345	0.0011774	0.30037	0.00026294	1.6454	0.0014403	875.3684695094412	24.333	0.33788	24.32	24.248	24.586	-0.012749	432	103	1.3625998	0.060848475	1.3610804	277.1909	0	12.378296						637	15	4	NaN	NaN	NaN	0.020004	1	5593	5593		71.993	15.022	1	145480			8479	2008	4933	5027	6678	6678					-0.08123892267622068
GYGILGKG	8	Unmodified	_GYGILGKG_					0	0	0		ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	ENST00000420642.1_7:74765936-74789271:+|nuORF	ENST00000420642.1_7:74765936-74789271:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.4301155641001	1	764.430116	763.422839	1.2653	0.0009672	8.0492	0.0061531	9.3145	0.0071203	764.4371078582499	32.756	0.14476	32.756	32.707	32.852	0	507	52	1.3178225	0.030490756	1.3178225	268.68442	0	6.216614						119	7	2	NaN	NaN	NaN	0.82797	1	4266	4266		5.4659	2.3125	1	11067			8480	6182	4934	5028	6679	6679					0.031664591515209395
GYGILGKG	8	Unmodified						0	0	0		ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	ENST00000420642.1_7:74765936-74789271:+|nuORF	ENST00000420642.1_7:74765936-74789271:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.430116	763.422839	1.2768	0.00097603	9.4857	0.0072511	10.762	0.0082271	764.4383089576554	32.755	0.096535	32.752	32.703	32.8	-0.0031013	504	49	1.3196158	0.028692722	1.3180964	269.05008		5.850006	-0.0020956	0.00054945	0.00013697	NaN	5.4659	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11630			8481	6182	4934	5028							0.031664591515209395
GYGKGGSG	8	Unmodified	_GYGKGGSG_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3154797368001	1	682.31548	681.308203	0.97501	0.00066527	-7.4869	-0.0051085	-6.5119	-0.0044432	682.3104410837	33.359	0.12068	33.359	33.311	33.431	0	1104	43	0.9570911	0.02564758	0.9570911	195.55136	0	5.24028						76	6	2	NaN	NaN	NaN	0.8439	1	2865	2865		3.1533	1.7138	1	5628.6	+		8482	8925	4935	5029	6680	6680					-0.04519850330427744
GYHFKPVQD	9	Unmodified	_GYHFKPVQD_					0	0	0			REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7694484946501	2	545.769448	1089.52434	1.3996	0.00076388	-8.0613	-0.0043996	-6.6617	-0.0036357	545.7653599008213	21.994	0.19268	21.98	21.956	22.149	-0.013897	1263	76	0.85970795	0.04605466	0.8581885	348.7016	0	18.679962						287	9	3	NaN	NaN	NaN	0.27442	1	12063	12063		20.555	7.0924	1	93928	+		8483	11177	4936	5030	6681	6681					-0.01683714216574117
GYHFKPVQD	9	Unmodified						0	0	0			REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.769448	1089.52434	1.7381	0.0009486	-8.658	-0.0047253	-6.9199	-0.0037767	545.7646063929784	21.97	0.096344	21.97	21.97	22.067	0	1263	82	0.85970795	0.04973364	0.85970795	348.7016		20.17218	-0.0049785	-0.00016804	0.00075972	NaN	20.555	223	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74008	+		8484	11177	4936	5030							-0.01683714216574117
GYHFKPVQD	9	Unmodified						0	0	0			REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.769448	1089.52434	1.3996	0.00076388	-8.0613	-0.0043996	-6.6617	-0.0036357	545.7653599008213	21.994	0.19268	21.98	21.956	22.149	-0.013897	1263	76	0.85970795	0.04605466	0.8581885	348.7016		18.679962	0.0049785	0.00048324	-0.00075972	NaN	20.555	287	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93928	+		8485	11177	4936	5030							-0.01683714216574117
GYHGLCDAL	9	Unmodified	_GYHGLCDAL_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4243782591999	1	948.424378	947.417102	1.0347	0.0009813	6.5133	0.0061774	7.5479	0.0071587	948.4306995470012	30.245	0.1689	30.238	30.19	30.359	-0.0064106	333	70	1.4215236	0.04099822	1.4200041	288.832	0	8.3302						299	8	3	NaN	NaN	NaN	0.27442	1	6875	6875		20.555	1.2707	1	35217	+		8486	9982	4937	5031	6682	6682					-0.058710074224677555
GYHGLCDAL	9	Unmodified						0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.424378	947.417102	1.7911	0.0016988	6.7227	0.006376	8.5138	0.0080747	948.4302139789932	30.246	0.2413	30.246	30.198	30.439	0	330	70	1.4233059	0.04099822	1.4233059	289.19415		8.3302	0.0036904	0.00013639	0.0016509	NaN	20.555	281	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31528	+		8487	9982	4937	5031							-0.058710074224677555
GYHGLCDAL	9	Unmodified						0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.424378	947.417102	1.0347	0.0009813	6.5133	0.0061774	7.5479	0.0071587	948.4306995470012	30.245	0.1689	30.238	30.19	30.359	-0.0064106	333	70	1.4215236	0.04099822	1.4200041	288.832		8.3302	-0.0036904	-6.2228E-05	-0.0016509	NaN	20.555	299	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35217	+		8488	9982	4937	5031							-0.058710074224677555
GYIDMVSTF	9	Unmodified	_GYIDMVSTF_					0	0	0		ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.4706597498	1	1032.47066	1031.46338	1.6897	0.0017445	2.5942	0.0026785	4.2839	0.004423	1032.47329611399	29.739	0.12065	29.739	29.715	29.836	0	177	91	1.5139546	0.0532012	1.5139546	307.2532	0	10.797028						189	6	3	NaN	NaN	NaN	0.41766	1	9832	9832		13.003	0.95414	1	16913			8489	2580	4938	5032	6683	6683					-0.05108987311018609
GYIDMVSTF	9	Unmodified	_GYIDMVSTF_					0	0	0		ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.4706597498	1	1032.47066	1031.46338	1.094	0.0011295	1.1818	0.0012201	2.2757	0.0023496	1032.4708738898494	29.738	0.072382	29.731	29.707	29.779	-0.0070648	174	64	1.5157272	0.03722298	1.5142077	307.61295	0	7.5543213						111	4	2	NaN	NaN	NaN	0.094712	1	9623	9623		36.586	17.302	1	13375			8490	2580	4938	5032	6684	6684					-0.05108987311018609
GYIDNVTLI	9	Unmodified	_GYIDNVTLI_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.5407882255003	1	1007.54079	1006.53351	1.7558	0.001769	0.31818	0.00032058	2.074	0.0020896	1007.5412513625496	29.474	0.21725	29.474	29.401	29.618	0	132	127	1.5405227	0.074386954	1.5405227	312.7473	0	15.101593						612	10	5	NaN	NaN	NaN	0.036546	1	8847	8847		52.624	4.6218	1	152270			8491	621	4939	5033	6685	6685					0.0305063434910835
GYIEDLKKF	9	Unmodified	_GYIEDLKKF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.8029569610001	2	556.802957	1111.59136	1.2232	0.00068108	-4.1131	-0.0022902	-2.8899	-0.0016091	556.8001252289598	20.983	0.16846	20.983	20.959	21.127	0	1200	91	0.89836043	0.05519098	0.89836043	364.28885	0	22.380157						237	8	3	NaN	NaN	NaN	0.054111	1	13348	13348		45.165	8.9301	1	40828			8492	747	4940	5034	6686	6686					0.040028962745282115
GYIEDLKKF	9	Unmodified						0	0	0		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.802957	1111.59136	1.0744	0.00059822	-5.6658	-0.0031547	-4.5914	-0.0025565	556.7989964535607	21.055	0.19258	21.041	20.969	21.162	-0.014086	1203	118	0.8965218	0.07174438	0.89500237	363.5433		29.092651	0.029162	-0.00098134	-0.001679	NaN	45.165	321	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47734			8493	747	4940	5034							0.040028962745282115
GYIEHFSLW	9	Unmodified	_GYIEHFSLW_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2796490402001	2	576.279649	1150.54475	1.7644	0.0010168	-0.20071	-0.00011566	1.5637	0.00090114	576.2791505423437	28.484	0.14483	28.484	28.436	28.581	0	1197	55	0.9001988	0.033093095	0.9001988	364.88293	0	13.413818						211	7	3	NaN	NaN	NaN	0.16171	1	14826	14826		27.789	7.2334	1	46885			8494	5279	4941	5035	6687	6687					-0.024505435567562017
GYIEHFSLW	9	Unmodified	_GYIEHFSLW_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2796490402001	2	576.279649	1150.54475	1.0617	0.00061182	0.019165	1.1045E-05	1.0808	0.00062287	576.2792282828038	28.532	0.14477	28.523	28.451	28.596	-0.0083485	1197	85	0.9001988	0.051478148	0.8986794	364.88293	0	20.865967						305	7	5	NaN	NaN	NaN	0.04947	1	14318	14318		47.136	25.009	1	51775			8495	5279	4941	5035	6688	6688					-0.024505435567562017
GYIEKVHYL	9	Unmodified	_GYIEKVHYL_					0	0	0		ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3031241365001	2	561.303124	1120.5917	2.1492	0.0012064	-1.6463	-0.00092405	0.50297	0.00028232	561.3020287098938	18.772	0.12001	18.772	18.748	18.868	0	1164	40	0.9204082	0.023870885	0.9204082	373.1926	0	9.6788025						160	6	3	NaN	NaN	NaN	0.02857	1	13710	13710		60.982	13.846	1	25664			8496	1488	4942	5036	6689	6689					0.036223159943801875
GYIEKVHYL	9	Unmodified	_GYIEKVHYL_					0	0	0		ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.3031241365001	2	561.303124	1120.5917	1.575	0.00088405	-0.87653	-0.000492	0.69847	0.00039206	561.3027163779826	18.914	0.16825	18.9	18.852	19.02	-0.014059	1164	40	0.9204082	0.023868322	0.91888875	373.1926	0	9.677765						195	8	3	NaN	NaN	NaN	0.028349	1	13308	13308		61.271	16.969	1	28028			8497	1488	4942	5036	6690	6690					0.036223159943801875
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.8085736551501	2	544.808574	1087.60259	1.767	0.00096269	-0.64866	-0.00035339	1.1184	0.00060929	544.8081722570337	22.115	0.1689	22.115	22.067	22.236	0	1221	64	0.885486	0.038648307	0.885486	359.1652	0	15.67627						174	8	2	NaN	NaN	NaN	0.0028258	1	12292	12292		108.53	58.57	1	86448			8498	4315	4943	5037	6691	6691					0.062297183686723656
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2692813191501	2	523.269281	1044.52401	1.8903	0.00098913	-3.6528	-0.0019114	-1.7625	-0.00092227	523.2667896042775	19.804	0.16823	19.804	19.756	19.924	0	1284	61	0.8468043	0.036889493	0.8468043	343.65253	0	14.970642						326	8	5	NaN	NaN	NaN	0.016254	1	10399	10399		76.739	34.955	1	114480			8499	2480	4944	5038	6692	6692					0.0035286606357658457
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2692813191501	2	523.269281	1044.52401	1.6238	0.00084971	-3.1549	-0.0016508	-1.531	-0.00080114	523.2672088116225	19.827	0.14436	19.813	19.789	19.934	-0.014141	1287	64	0.8449601	0.038723588	0.84344065	342.9041	0	15.714905						335	7	5	NaN	NaN	NaN	0.03618	1	10190	10190		52.78	23.884	1	113190			8500	2480	4944	5038	6693	6693					0.0035286606357658457
GYIGAALVL	9	Unmodified	_GYIGAALVL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.5189305713999	1	876.518931	875.511654	1.3802	0.0012098	-1.7596	-0.0015423	-0.37945	-0.00033259	876.5179153876362	30.559	0.048233	30.553	30.529	30.577	-0.0057564	336	43	1.419741	0.02495408	1.4182216	288.80914	0	5.0762634						58	3	2	NaN	NaN	NaN	0.36886	1	5610	5610		15.013	3.8426	1	4067.2			8501	3057	4945	5039	6694	6694					0.06891874391169495
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2763780697501	2	501.276378	1000.5382	1.6399	0.00082202	-2.7664	-0.0013867	-1.1265	-0.00056471	501.27542272332994	28.532	0.24133	28.532	28.436	28.677	0	1290	52	0.84311575	0.031361163	0.84311575	342.35126	0	12.734375						176	11	3	NaN	NaN	NaN	0.23112	1	8620	8620		23.334	6.9178	1	21918			8502	4574	4946	5040	6695	6695					0.037955632825287466
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2763780697501	2	501.276378	1000.5382	0.95273	0.00047758	-2.1411	-0.0010733	-1.1884	-0.00059572	501.2749536343783	28.556	0.19301	28.547	28.499	28.692	-0.0083504	1290	46	0.84311575	0.027665615	0.8415963	342.35123	0	11.233795						193	9	4	NaN	NaN	NaN	0.25448	1	8454	8454		21.835	9.2471	1	21061			8503	4574	4946	5040	6696	6696					0.037955632825287466
GYILSVVLL	9	Unmodified	_GYILSVVLL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.6077455787002	1	976.607746	975.600469	1.4463	0.0014125	-0.88064	-0.00086004	0.5657	0.00055246	976.6065575402556	36.902	0.16821	36.904	36.832	37	0.0022469	141	61	1.5352125	0.035407305	1.5336931	311.80276	0	7.1912537						235	8	3	NaN	NaN	NaN	0.056273	1	7623	7623		44.247	2.7868	1	26776			8504	3536	4947	5041	6697	6697					0.11169289630868207
GYIRGSWQF	9	Unmodified	_GYIRGSWQF_					0	0	0		ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.27744070225	2	557.277441	1112.54033	1.8283	0.0010189	1.4976	0.00083461	3.326	0.0018535	557.2797177102182	23.152	0.14467	23.152	23.079	23.224	0	1248	64	0.8689189	0.038656652	0.8689189	352.3465	0	15.675232						165	7	3	NaN	NaN	NaN	0.27507	1	13373	13373		20.513	5.3379	1	20848			8505	2687	4948	5042	6698	6698					-0.01144007979678463
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5087598156001	1	1004.50876	1003.50148	1.2147	0.0012202	0.12627	0.00012684	1.341	0.001347	1004.5089006127796	33.335	0.24134	33.335	33.287	33.528	0	138	106	1.5369828	0.061998963	1.5369828	312.04138	0	12.587158						438	11	3	NaN	NaN	NaN	0.14945	1	8725	8725		28.667	1.935	1	93217			8506	2710	4949	5043	6699	6699					-0.00012733334040149202
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5087598156001	1	1004.50876	1003.50148	1.0544	0.0010592	0.70357	0.00070674	1.758	0.0017659	1004.5090591010498	33.334	0.21716	33.331	33.283	33.5	-0.0024757	138	94	1.5369828	0.054895997	1.5354633	312.04138	0	11.145081						414	10	3	NaN	NaN	NaN	0.17818	1	8552	8552		26.732	6.1761	1	84970			8507	2710	4949	5043	6700	6700					-0.00012733334040149202
GYKFKLWN	8	Unmodified	_GYKFKLWN_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.52727689356675	3	352.527277	1054.56	1.4236	0.00050185	-1.806	-0.00063666	-0.38241	-0.00013481	352.5265398523786	20.887	0.072321	20.887	20.862	20.935	0	1470	34	0.7320868	0.020422697	0.7320868	445.58563	0	12.430298						59	4	2	NaN	NaN	NaN	0.82332	1	10846	10846		3.9685	0.040405	1	6942.3	+		8508	9560	4950	5044	6701	6701					0.03490368031111757
GYKFKLWN	8	Unmodified						0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	352.527277	1054.56	1.4236	0.00050185	-1.806	-0.00063666	-0.38241	-0.00013481	352.5265398523786	20.887	0.072321	20.887	20.862	20.935	0	1470	34	0.7320868	0.020422697	0.7320868	445.58563		12.430298	-0.077308	-0.00085228	0.001688	NaN	3.9685	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6942.3	+		8509	9560	4950	5044							0.03490368031111757
GYKFKLWN	8	Unmodified						0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	352.527277	1054.56	2.1126	0.00074475	0.46165	0.00016274	2.5742	0.00090749	352.527037194198	21.055	0.096354	21.041	20.993	21.089	-0.014086	1473	28	0.7302302	0.016711295	0.7287108	444.4556		10.171356	0.077308	0.0015459	-0.001688	NaN	3.9685	40	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3279.7	+		8510	9560	4950	5044							0.03490368031111757
GYKPDFVGF	9	Unmodified	_GYKPDFVGF_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2556426276501	2	515.255643	1028.49673	1.6289	0.00083932	-2.1508	-0.0011082	-0.5218	-0.00026886	515.2547891651689	24.188	0.072453	24.188	24.164	24.237	0	1314	61	0.8283535	0.03690952	0.8283535	336.2329	0	14.9817505						117	4	3	NaN	NaN	NaN	0.055351	1	9710	9710		44.638	7.3361	1	10364			8511	4424	4951	5045	6702	6702					-0.01637617476808373
GYKPDFVGF	9	Unmodified						0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.255643	1028.49673	1.2917	0.00066555	-0.69416	-0.00035767	0.59752	0.00030788	515.2549795149008	24.236	0.096558	24.224	24.199	24.296	-0.012747	1314	55	0.8283535	0.033218563	0.8268341	336.2329		13.483582	0.01763	0.00060237	-0.00075972	NaN	44.638	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11668			8512	4424	4951	5045							-0.01637617476808373
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.25564262765	2	491.255643	980.496732	1.5834	0.00077786	-2.4756	-0.0012161	-0.89217	-0.00043828	491.25409655480723	21.344	0.19256	21.344	21.296	21.488	0	1317	49	0.8265074	0.029546797	0.8265074	335.70035	0	12.000946						194	9	3	NaN	NaN	NaN	0.10363	1	7898	7898		35.296	11.962	1	26375			8513	3092	4952	5046	6703	6703					0.005703825231876181
GYLHVFYDF	9	Unmodified	_GYLHVFYDF_					0	0	0		ENST00000519245.1_1_6:112457126-112460429:-|nuORF;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.77419952155	2	580.7742	1159.53385	1.7083	0.00099215	-0.4734	-0.00027494	1.2349	0.00071721	580.7737125941347	28.75	0.19306	28.75	28.725	28.918	0	1155	49	0.92591566	0.02936846	0.92591566	375.27243	0	11.903015						149	9	3	NaN	NaN	NaN	0.22308	1	15119	15119		23.85	16.987	1	24407			8514	1887	4953	5047	6704	6704					-0.03953945931061753
GYLHVFYDF	9	Unmodified	_GYLHVFYDF_					0	0	0		ENST00000519245.1_1_6:112457126-112460429:-|nuORF;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.77419952155	2	580.7742	1159.53385	1.2057	0.00070022	2.621	0.0015222	3.8267	0.0022224	580.7760360634929	28.797	0.12066	28.789	28.765	28.885	-0.0083504	1155	88	0.92591566	0.053267717	0.9243962	375.2724	0	21.589355						170	6	3	NaN	NaN	NaN	0.3389	1	14613	14613		16.417	8.1264	1	24757			8515	1887	4953	5047	6705	6705					-0.03953945931061753
GYLPNQLFRTF	11	Unmodified	_GYLPNQLFRTF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3589619937001	2	678.358962	1354.70337	1.3487	0.00091493	-4.371	-0.0029651	-3.0222	-0.0020502	678.3569143576583	29.594	0.12066	29.594	29.594	29.715	0	1074	61	0.9754029	0.036611736	0.9754029	394.65936	0	14.813538						126	6	2	NaN	NaN	NaN	0.61402	1	19602	19602		13.101	6.851	1	13343			8516	899	4954	5048	6706	6706					0.040207503515148346
GYLPNQLFRTF	11	Unmodified	_GYLPNQLFRTF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3589619937001	2	678.358962	1354.70337	1.7833	0.0012097	-2.8774	-0.0019519	-1.0941	-0.00074216	678.3571382485858	28.798	0.28963	28.798	28.75	29.039	0	1071	91	0.977233	0.05489987	0.977233	395.39984	0	22.213165						798	13	6	NaN	NaN	NaN	1.9628E-07	1	19603	19603		97.213	75.442	1	329190			8517	899	4954	5048	6707	6707					0.040207503515148346
GYLPNQLFRTF	11	Unmodified	_GYLPNQLFRTF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3589619937001	2	678.358962	1354.70337	1.2701	0.00086159	-2.0605	-0.0013977	-0.79034	-0.00053613	678.8593494976584	29.546	0.096569	29.546	29.474	29.57	0	1071	49	0.977233	0.029286265	0.977233	395.39984	0	11.849548						105	5	3	NaN	NaN	NaN	0.53563	1	19605	19605		17.198	10.768	1	8415.3			8518	899	4954	5048	6708	6708					0.040207503515148346
GYLPNQLFRTF	11	Unmodified	_GYLPNQLFRTF_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.3589619937001	2	678.358962	1354.70337	1.431	0.00097074	-2.7407	-0.0018592	-1.3097	-0.00088845	678.357127361619	28.821	0.28958	28.813	28.74	29.03	-0.0083504	1071	85	0.977233	0.051234365	0.97571355	395.39984	0	20.730042						754	13	5	NaN	NaN	NaN	0.021226	1	18718	18718		61.575	41.061	1	311110			8519	899	4954	5048	6709	6709					0.040207503515148346
GYLRSVFAL	9	Unmodified	_GYLRSVFAL_					0	0	0		ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2925594502001	2	513.292559	1024.57057	1.6663	0.00085528	-0.94082	-0.00048292	0.72545	0.00037237	513.2923240211924	26.843	0.1448	26.843	26.819	26.964	0	1227	46	0.88180584	0.027605891	0.88180584	357.94757	0	11.205963						189	7	4	NaN	NaN	NaN	0.29341	1	9570	9570		19.336	1.5375	1	29509			8520	1028	4955	5049	6710	6710					0.05926350685513171
GYLRSVFAL	9	Unmodified	_GYLRSVFAL_					0	0	0		ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2925594502001	2	513.292559	1024.57057	0.91651	0.00047044	-0.35879	-0.00018416	0.55772	0.00028627	513.2921657612402	26.939	0.19308	26.928	26.856	27.049	-0.010645	1230	52	0.8799654	0.031290054	0.878446	357.2005	0	12.701416						225	9	3	NaN	NaN	NaN	0.028569	1	9383	9383		60.984	33.195	1	30270			8521	1028	4955	5049	6711	6711					0.05926350685513171
GYLSIVVLL	9	Unmodified	_GYLSIVVLL_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF;nc|ENSG00000170921|Q9HCD6-4|TANC2;ENST00000583545.1_1_17:61432467-61466989:+|nuORF;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.6077455787002	1	976.607746	975.600469	1.6213	0.0015834	0.64393	0.00062886	2.2652	0.0022122	976.6087064328134	36.88	0.16842	36.88	36.832	37	0	144	70	1.533442	0.04071617	1.533442	311.44318	0	8.269501						265	8	3	NaN	NaN	NaN	0.032417	1	7781	7781		55.947	5.9148	1	37579			8522	4755	4956	5050	6712	6712					0.11169289630868207
GYLTIKFYERN	11	Unmodified	_GYLTIKFYERN_					0	0	0			REV__ENST00000470902.5_1_9:130912815-130915395:+|nuORF	REV__ENST00000470902.5_1_9:130912815-130915395:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.36952668	2	702.369527	1402.7245	1.6894	0.0011866	-3.827	-0.002688	-2.1376	-0.0015014	702.3670081107467	25.684	0.14475	25.672	25.624	25.769	-0.0116	1047	46	0.99186665	0.027430713	0.9903472	401.18198	0	11.094971						119	7	2	NaN	NaN	NaN	0.7072	1	19142	19142		6.9844	1.0646	1	11355	+		8523	8324	4957	5051	6713	6713					0.03924715660355105
GYLYEHNFAFF	11	Unmodified	_GYLYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.32204517115	2	704.322045	1406.62954	0.94036	0.00066232	-2.7809	-0.0019587	-1.8405	-0.0012963	704.3192623892716	29.474	0.072479	29.474	29.449	29.522	0	1035	43	0.99917877	0.025586784	0.99917877	404.12857	0	10.348877						97	4	3	NaN	NaN	NaN	0.72005	1	20113	20113		6.1406	1.8305	1	8041			8524	639	4958	5052	6714	6714					-0.057512178108254375
GYLYEHNFAFF	11	Unmodified	_GYLYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.32204517115	2	704.322045	1406.62954	1.0451	0.00073608	-0.68572	-0.00048297	0.35937	0.00025311	704.3227805398103	29.473	0.096497	29.466	29.466	29.562	-0.0070667	1035	52	0.99917877	0.031081498	0.9976593	404.12857	0	12.571259						94	5	3	NaN	NaN	NaN	0.73057	1	19165	19165		5.4499	0.72086	1	6174.1			8525	639	4958	5052	6715	6715					-0.057512178108254375
GYMEGYYTF	9	Unmodified	_GYMEGYYTF_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.4499243076998	1	1130.44992	1129.44265	1.9698	0.0022267	0.25615	0.00028956	2.2259	0.0025163	1130.4507046699275	27.326	0.024128	27.326	27.326	27.35	0	48	64	1.5900038	0.037073493	1.5900038	322.3176	0	7.5153503						66	2	2	NaN	NaN	NaN	0.01047	1	14045	14045		91.429	66.867	1	6627.9			8526	1763	4959	5053	6716	6716					-0.11689577690708575
GYMEGYYTF	9	Unmodified	_GYMEGYYTF_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.4499243076998	1	1130.44992	1129.44265	1.9394	0.0021924	0.69267	0.00078303	2.6321	0.0029754	1130.4502567358534	27.277	0.024118	27.277	27.253	27.277	0	54	76	1.5864743	0.044139743	1.5864743	321.6021	0	8.947784						62	2	2	NaN	NaN	NaN	0.01047	1	14046	14046		91.429	66.867	1	7957.3			8527	1763	4959	5053	6717	6717					-0.11689577690708575
GYMEGYYTF	9	Unmodified						0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1130.44992	1129.44265	1.6787	0.0018977	1.4	0.0015826	3.0787	0.0034803	1130.450197028533	27.349	0.072418	27.339	27.339	27.411	-0.010126	51	40	1.5882392	0.0229429	1.5867198	321.95987		4.650879	0.0066356	0.00084756	-0.001642	NaN	91.429	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2929.1			8528	1763	4959	5053							-0.11689577690708575
GYMEGYYTF	9	Unmodified						0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1130.44992	1129.44265	1.162	0.0013136	3.3926	0.0038351	4.5546	0.0051487	1130.4536562579933	27.301	0.096527	27.291	27.218	27.315	-0.010126	72	64	1.5758814	0.037093043	1.5743619	319.45474		7.5193176	0.0066336	0.0017906	-0.0060562	NaN	91.429	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5953.5			8529	1763	4959	5053							-0.11689577690708575
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(53)EGYYTF	0	0	1		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1146.4448389297997	1	1146.44484	1145.43756	2.5123	0.0028802	1.8405	0.0021101	4.3529	0.0049903	1146.4466247383164	24.671	0.16892	24.671	24.671	24.84	0	60	67	1.582944	0.038853288	1.582944	320.83234	0	7.874817						176	8	2	NaN	NaN	NaN	0.03623	1	14626	14626		52.758	29.424	1	15475			8530	1763	4959	5054	6718	6718		198			-0.12933881553317406
GYMSVFYLCEV	11	Unmodified	_GYMSVFYLCEV_					0	0	0			REV__ENSG00000135898|ENST00000650999|GPR55	REV__ENSG00000135898|ENST00000650999|GPR55	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.7934173694001	2	655.793417	1309.57228	1.2912	0.00084677	-2.586	-0.0016959	-1.2948	-0.00084909	655.7929110181682	31.331	0.07239	31.326	31.277	31.35	-0.0050716	1086	49	0.9680805	0.029308379	0.9665611	391.83295	0	11.86264						46	4	2	NaN	NaN	NaN	0.76654	1	18091	18091		2.5994	0.13793	1	3217.9	+		8531	9635	4960	5055	6719	6719					-0.07012144403051934
GYNALLRYE	9	Unmodified	_GYNALLRYE_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7825558699	2	549.782556	1097.55056	1.6591	0.00091217	3.9108	0.0021501	5.57	0.0030623	549.7838218143748	16.946	0.16787	16.933	16.885	17.053	-0.013294	1248	85	0.8689189	0.05158961	0.86739945	352.40536	0	20.923065						268	8	2	NaN	NaN	NaN	0.18779	1	12417	12417		26.115	1.5529	1	41441			8532	403	4961	5056	6720	6720					0.005685549548843483
GYNGELYIF	9	Unmodified	_GYNGELYIF_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5094880970998	1	1075.50949	1074.50221	1.297	0.001395	3.7509	0.0040342	5.048	0.0054291	1075.5171231095615	30.727	0.16887	30.722	30.649	30.818	-0.0057545	99	103	1.5599792	0.06014788	1.5584598	316.42642	0	12.200378						236	8	2	NaN	NaN	NaN	0.14787	1	11442	11442		28.896	13.433	1	24558			8533	2433	4962	5057	6721	6721					-0.03205938685005094
GYNGELYIF	9	Unmodified						0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1075.50949	1074.50221	1.2832	0.0013801	7.2396	0.0077862	8.5227	0.0091663	1075.5177416766273	30.608	0.048256	30.608	30.56	30.608	0	102	64	1.5582114	0.037132382	1.5582114	316.0678		7.531952	-0.056934	0.0017258	-0.0001242	NaN	28.896	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5934.3			8534	2433	4962	5057							-0.03205938685005094
GYNKTLVNW	9	Unmodified	_GYNKTLVNW_					0	0	0		ENST00000553841.1_1_14:45369974-45372804:+|nuORF	ENST00000553841.1_1_14:45369974-45372804:+|nuORF	ENST00000553841.1_1_14:45369974-45372804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7850985588501	2	547.785099	1093.55564	1.4837	0.00081274	-2.6463	-0.0014496	-1.1627	-0.00063689	547.7835879319967	21.272	0.26485	21.272	21.127	21.392	0	1281	100	0.84864825	0.06080526	0.84864825	344.1999	0	24.661774						583	12	3	NaN	NaN	NaN	0.16171	1	12558	12558		27.789	2.8278	1	138110			8535	7561	4963	5058	6722	6722					0.012608588175226032
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(69)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7576921776	2	568.757692	1135.50083	2.1783	0.0012389	0.75587	0.0004299	2.9342	0.0016688	568.7576686227048	22.79	0.1929	22.79	22.766	22.959	0	1257	85	0.86339295	0.051544964	0.86339295	350.01907	0	20.896301						343	9	4	NaN	NaN	NaN	0.022082	1	14287	14287		69.363	39.765	1	88515			8536	4547	4964	5059	6723	6723		482			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(47)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7576921776	2	568.757692	1135.50083	1.1894	0.00067651	1.9669	0.0011187	3.1563	0.0017952	568.7586845153013	22.669	0.096493	22.655	22.631	22.728	-0.01354	1251	46	0.8670771	0.027629793	0.8655577	351.51263	0	11.201111						165	5	4	NaN	NaN	NaN	0.048656	1	13818	13818		47.482	15.029	1	49015			8537	4547	4964	5059	6724	6724		482			-0.06149896045417336
GYNVKFDMF	9	Unmodified	_GYNVKFDMF_					0	0	0		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.76023486655	2	560.760235	1119.50592	2.1321	0.0011956	-2.307	-0.0012937	-0.17487	-9.8062E-05	560.7583818738085	26.143	0.36196	26.131	26.011	26.373	-0.011137	1266	142	0.85786515	0.08654541	0.8563457	347.83774	0	35.09146						660	16	5	NaN	NaN	NaN	0.032689	1	13236	13236		55.592	38.733	1	126250			8538	4547	4964	5060	6725	6725					-0.049055921827857674
GYPALGLLKF	10	Unmodified	_GYPALGLLKF_					0	0	0		ENST00000468586.5_1_1:62149184-62190652:-|nuORF;ENSG00000162604|ENST00000606498|TM2D1;ENST00000488206.5_1_1:62149110-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8184100599501	2	539.81841	1077.62227	2.0448	0.0011038	1.7583	0.00094917	3.8031	0.002053	539.8185209920441	30.077	0.33789	30.077	29.884	30.222	0	1233	85	0.87812483	0.05151713	0.87812483	356.22064	0	20.898468						366	15	2	NaN	NaN	NaN	0.65442	1	11880	11880		11.17	1.4243	1	56021			8539	4152	4965	5061	6726	6726					0.0865609437942112
GYPALGLLKF	10	Unmodified	_GYPALGLLKF_					0	0	0		ENST00000468586.5_1_1:62149184-62190652:-|nuORF;ENSG00000162604|ENST00000606498|TM2D1;ENST00000488206.5_1_1:62149110-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8184100599501	2	539.81841	1077.62227	0.93355	0.00050395	2.5235	0.0013622	3.4571	0.0018662	539.8182379944433	30.052	0.12064	30.045	29.925	30.045	-0.0064106	1227	79	0.88180584	0.047827005	0.8802864	357.71387	0	19.40152						258	6	3	NaN	NaN	NaN	0.47601	1	11577	11577		20.449	10.703	1	28674			8540	4152	4965	5061	6727	6727					0.0865609437942112
GYPDHMVFSEF	11	Unmodified	_GYPDHMVFSEF_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.7844382443501	2	664.784438	1327.55432	1.901	0.0012638	-3.1998	-0.0021272	-1.2988	-0.0008634	664.7825720233106	26.408	0.12069	26.408	26.384	26.505	0	1101	46	0.95892316	0.02748698	0.95892316	388.0716	0	11.12384						170	6	4	NaN	NaN	NaN	0.29515	1	19215	19215		25.801	9.2168	1	16338			8541	5636	4966	5062	6728	6728					-0.09635143333548513
GYPDHMVFSEF	11	Unmodified	_GYPDHMVFSEF_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.7844382443501	2	664.784438	1327.55432	1.8666	0.0012409	-2.7753	-0.0018449	-0.90863	-0.00060405	665.2840413990347	26.432	0.096535	26.421	26.373	26.469	-0.011137	1104	73	0.9570911	0.043995738	0.95557165	387.33017	0	17.80487						133	5	3	NaN	NaN	NaN	0.54514	1	18356	18356		16.858	3.8555	1	13162			8542	5636	4966	5062	6729	6729					-0.09635143333548513
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7610921463	2	516.761092	1031.50763	2.3529	0.0012159	-1.6306	-0.00084264	0.72229	0.00037325	516.760245235092	25.419	0.21711	25.419	25.371	25.588	0	1245	103	0.87076044	0.06265128	0.87076044	353.4325	0	25.429474						483	10	4	NaN	NaN	NaN	0.062836	1	9842	9842		41.46	22.342	1	131640			8543	2315	4967	5063	6730	6730					-0.006862151025416097
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7610921463	2	516.761092	1031.50763	1.9485	0.0010069	-0.29965	-0.00015485	1.6488	0.00085204	516.7608435051137	25.443	0.14478	25.431	25.382	25.527	-0.012011	1245	97	0.87076044	0.0589723	0.869241	353.43246	0	23.936218						497	7	4	NaN	NaN	NaN	0.13477	1	9629	9629		30.791	10.236	1	129340			8544	2315	4967	5063	6731	6731					-0.006862151025416097
GYPLSRKFF	9	Unmodified	_GYPLSRKFF_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8058340009501	2	557.805834	1113.59712	1.4988	0.00083607	-10.246	-0.0057151	-8.7469	-0.0048791	557.7993987604277	27.519	0.26547	27.519	27.422	27.688	0	1230	97	0.8799654	0.058863997	0.8799654	356.82178	0	23.86908						466	12	3	NaN	NaN	NaN	0.27608	1	13436	13436		20.449	8.4	1	101450	+		8545	10218	4968	5064	6732	6732					0.044860395768409944
GYPLSRKFF	9	Unmodified	_GYPLSRKFF_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8058340009501	2	557.805834	1113.59712	1.2708	0.00070888	-10.676	-0.005955	-9.4049	-0.0052461	557.7990209857733	27.542	0.36197	27.533	27.388	27.75	-0.0095501	1227	85	0.88180584	0.05151713	0.8802864	357.56805	0	20.889954						537	16	3	NaN	NaN	NaN	0.18779	1	13052	13052		26.115	4.3439	1	121820	+		8546	10218	4968	5064	6733	6733					0.044860395768409944
GYPLSRKFF	9	Unmodified						0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.805834	1113.59712	1.4988	0.00083607	-10.246	-0.0057151	-8.7469	-0.0048791	557.7993987604277	27.519	0.26547	27.519	27.422	27.688	0	1230	97	0.8799654	0.058863997	0.8799654	356.82178		23.86908	-0.0068899	0.00027473	-0.00016048	NaN	26.115	466	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101450	+		8547	10218	4968	5064							0.044860395768409944
GYPLSRKFF	9	Unmodified						0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.805834	1113.59712	1.2708	0.00070888	-10.676	-0.005955	-9.4049	-0.0052461	557.7990209857733	27.542	0.36197	27.533	27.388	27.75	-0.0095501	1227	85	0.88180584	0.05151713	0.8802864	357.56805		20.889954	0.0068899	-0.00020499	0.00016048	NaN	26.115	537	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121820	+		8548	10218	4968	5064							0.044860395768409944
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.80275999575	2	555.80276	1109.59097	2.0886	0.0011609	-0.87623	-0.00048701	1.2124	0.00067386	555.8023475939647	28.219	0.24127	28.219	28.17	28.412	0	1221	73	0.885486	0.04414797	0.885486	359.07614	0	17.902588						673	11	7	NaN	NaN	NaN	0.0052656	1	13273	13273		102.05	67.592	1	718830			8549	5811	4969	5065	6734	6734					0.04055521345298985
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.80275999575	2	555.80276	1109.59097	1.7956	0.00099799	-1.0024	-0.00055715	0.79316	0.00044084	555.8020073064364	28.242	0.26544	28.233	28.137	28.402	-0.0089779	1221	82	0.885486	0.04966384	0.88396657	359.07614	0	20.139343						665	12	5	NaN	NaN	NaN	0.013696	1	12894	12894		81.699	50.024	1	703260			8550	5811	4969	5065	6735	6735					0.04055521345298985
GYQRRWFVL	9	Unmodified	_GYQRRWFVL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8354571076501	2	612.835457	1223.65636	1.3885	0.0008509	-1.953	-0.0011968	-0.5645	-0.00034594	612.8341875590856	23.296	0.21705	23.296	23.248	23.465	0	1125	46	0.9442611	0.027504742	0.9442611	382.472	0	11.140778						188	10	3	NaN	NaN	NaN	0.5168	1	17069	17069		6.2502	0	1	24746			8551	1747	4970	5066	6736	6736					0.05347935591044006
GYQRRWFVL	9	Unmodified	_GYQRRWFVL_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.89273022730004	3	408.89273	1223.65636	1.6612	0.00067923	-2.0474	-0.00083718	-0.38627	-0.00015794	408.89188382291997	23.296	0.19294	23.296	23.248	23.441	0	1497	46	0.71537006	0.027870297	0.71537006	434.63586	0	16.933105						147	9	2	NaN	NaN	NaN	0.2961	1	17070	17070		19.164	12.033	1	17264			8552	1747	4970	5066	6737	6737					0.05347935591044006
GYRCRGEWGVS	11	Unmodified	_GYRCRGEWGVS_					0	0	0		ENST00000592322.5_1_19:38901850-38916815:-|nuORF	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	ENST00000592322.5_1_19:38901850-38916815:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.8646229016666	3	423.864623	1268.57204	1.4539	0.00061624	4.2042	0.001782	5.658	0.0023982	423.8659977555504	13.3	0.096081	13.3	13.228	13.325	0	1491	76	0.7190863	0.046425343	0.7190863	436.7214	0	28.195404						108	5	2	NaN	NaN	NaN	0.77378	1	18199	18199		0.38034	0	1	8751			8553	7736	4971	5067	6738	6738					-0.05150383288037119
GYRGTKPDSLF	11	Unmodified	_GYRGTKPDSLF_					0	0	0		nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8196696577	2	620.81967	1239.62479	1.6898	0.0010491	-10.745	-0.0066709	-9.0554	-0.0056218	620.8137136582732	23.417	0.16889	23.417	23.32	23.489	0	1152	73	0.92775106	0.04404801	0.92775106	375.73068	0	17.83902						313	8	3	NaN	NaN	NaN	0.67772	1	17514	17514		8.9191	0.64155	1	45606			8554	4099	4972	5068	6739	6739					0.014558980464244087
GYRIELLGSF	10	Unmodified	_GYRIELLGSF_					0	0	0			REV__nc|ENSG00000196118|A1A4V9-2|CFAP119	REV__nc|ENSG00000196118|A1A4V9-2|CFAP119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8138559983001	2	577.813856	1153.61316	1.7104	0.00098829	-0.44891	-0.00025939	1.2615	0.0007289	577.8137994947812	26.819	0.16892	26.819	26.795	26.964	0	1194	61	0.902037	0.036762178	0.902037	365.6165	0	14.900543						351	8	5	NaN	NaN	NaN	0.12158	1	14935	14935		42.995	0	1	135320	+		8555	13205	4973	5069	6740	6740					0.04249701023104535
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7456390473501	2	557.745639	1113.47673	2.4595	0.0013718	-1.2965	-0.00072313	1.163	0.00064864	557.7451510046698	23.079	0.26494	23.079	22.983	23.248	0	1224	139	0.883646	0.084671974	0.883646	358.31467	0	34.334106						1019	12	4	NaN	NaN	NaN	0.0072287	1	13405	13405		98.041	66.48	1	739490			8556	1288	4974	5070	6741	6741					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.4840016281	1	1114.484	1113.47673	2.3699	0.0026412	-0.2456	-0.00027371	2.1243	0.0023675	1114.484851855412	23.079	0.096409	23.079	23.055	23.152	0	72	49	1.5758814	0.028257012	1.5758814	319.5101	0	5.7290955						79	5	2	NaN	NaN	NaN	0.12328	1	13406	13406		32.453	19.45	1	5908.1			8557	1288	4974	5070	6742	6742					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7456390473501	2	557.745639	1113.47673	2.3526	0.0013122	-1.3385	-0.00074653	1.0141	0.00056562	557.7450278672484	23.103	0.21699	23.09	23.041	23.258	-0.013294	1224	133	0.883646	0.080999315	0.88212657	358.31467	0	32.84488						1095	10	6	NaN	NaN	NaN	0.014046	1	13027	13027		80.639	55.678	1	758770			8558	1288	4974	5070	6743	6743					-0.07547413207407772
GYSEHFVEF	9	Unmodified						0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1114.484	1113.47673	1.8786	0.0020937	0.049579	5.5255E-05	1.9282	0.0021489	1114.4841666010643	23.103	0.096376	23.09	23.065	23.162	-0.013294	69	49	1.5776473	0.028253913	1.5761279	319.86813		5.728485	0.0051092	0.00010853	0.00012326	NaN	32.453	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5646.9			8559	1288	4974	5070							-0.07547413207407772
GYSGPAGG	8	Unmodified	_GYSGPAGG_					0	0	0		tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.14810355095005	2	333.148104	664.281654	1.3241	0.00044111	6.1997	0.0020654	7.5237	0.0025065	333.1498294946863	32.876	0.14481	32.876	32.804	32.949	0	1512	55	0.7060759	0.033460736	0.7060759	288.66534	0	13.679749						75	7	2	NaN	NaN	NaN	0.84876	1	2428	2428		0.39566	0	1	4981.7			8560	13964	4975	5071	6744	6744					-0.06391539221749554
GYSGPAGG	8	Unmodified						0	0	0		tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	333.148104	664.281654	1.6722	0.00055708	1.8281	0.00060902	3.5003	0.0011661	333.14853693934276	32.875	0.096516	32.872	32.824	32.92	-0.0031052	1515	37	0.7042165	0.022311985	0.70269704	287.90518		9.121826	-0.0020855	-0.0014585	-0.0016894	NaN	0.39566	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5957.8			8561	13964	4975	5071							-0.06391539221749554
GYSIFVFS	8	Unmodified	_GYSIFVFS_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4559959636001	1	919.455996	918.448719	0.7605	0.00069924	-0.13788	-0.00012678	0.62261	0.00057247	919.4552514558003	31.958	0.14476	31.954	31.93	32.075	-0.0037613	306	61	1.4375578	0.03562224	1.4360384	292.22192	0	7.24115						121	7	2	NaN	NaN	NaN	0.50567	1	6252	6252		30.791	5.0393	1	9768.8			8562	4851	4976	5072	6745	6745					-0.013766913968538574
GYSIHTYLW	9	Unmodified	_GYSIHTYLW_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-5|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.2796490402	2	570.279649	1138.54475	2.289	0.0013054	0.8794	0.0005015	3.1684	0.0018069	570.280283314137	25.95	0.16894	25.95	25.901	26.07	0	1200	67	0.89836043	0.040455878	0.89836043	364.1832	0	16.400269						303	8	3	NaN	NaN	NaN	0.018156	1	14396	14396		74.332	42.771	1	70057			8563	5081	4977	5073	6746	6746					-0.018985435567856257
GYSIHTYLW	9	Unmodified	_GYSIHTYLW_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-5|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.2796490402	2	570.279649	1138.54475	1.97	0.0011234	0.88907	0.00050702	2.859	0.0016305	570.2800022582817	25.974	0.19309	25.962	25.865	26.059	-0.0116	1200	73	0.89836043	0.044133663	0.896841	364.1832	0	17.891205						307	9	3	NaN	NaN	NaN	0.014943	1	13927	13927		78.398	43.959	1	65440			8564	5081	4977	5073	6747	6747					-0.018985435567856257
GYSISSFLQM	10	Oxidation (M)	_GYSISSFLQM(Oxidation (M))_		GYSISSFLQM(1)		GYSISSFLQM(55)	0	0	1		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7682568639	2	574.768257	1147.52196	2.0318	0.0011678	4.6055	0.0026471	6.6374	0.003815	575.2728837855534	20.887	0.38537	20.887	20.694	21.079	0	1212	91	0.8910048	0.0551731	0.8910048	361.1675	0	22.364319						1489	17	5	NaN	NaN	NaN	0.040041	1	14715	14715		55.413	23.738	1	1012300			8565	5899	4978	5074	6748	6748		602			-0.04589930736574388
GYSISSFLQM	10	Oxidation (M)						0	0	1		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.768257	1147.52196	1.7349	0.00099716	5.6047	0.0032214	7.3396	0.0042186	574.7716943521377	20.911	0.43336	20.897	20.704	21.138	-0.014086	1212	115	0.8910048	0.06990099	0.88948536	361.1675		28.334259	0.0050986	0.00035104	-0.00075972	NaN	55.413	1529	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336500			8566	5899	4978	5074				602			-0.04589930736574388
GYSPYQLTW	9	Unmodified	_GYSPYQLTW_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.5203871344	1	1114.52039	1113.51311	2.2668	0.0025264	-1.0531	-0.0011737	1.2136	0.0013526	1114.5188207930307	28.677	0.36199	28.677	28.605	28.967	0	150	163	1.5299006	0.09561002	1.5299006	310.18738	0	19.384949						966	16	4	NaN	NaN	NaN	0.00012056	1	13411	13411		121.66	82.2	1	255670			8567	1284	4979	5075	6749	6749					-0.03910536310718271
GYSPYQLTW	9	Unmodified	_GYSPYQLTW_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.5203871344	1	1114.52039	1113.51311	1.4575	0.0016244	-0.32515	-0.00036239	1.1324	0.001262	1114.5196977123094	28.676	0.36197	28.668	28.596	28.958	-0.0083504	147	154	1.5316714	0.090322256	1.530152	310.5464	0	18.312866						996	16	5	NaN	NaN	NaN	0.015029	1	13030	13030		78.289	28.457	1	237170			8568	1284	4979	5075	6750	6750					-0.03910536310718271
GYSSCSDG	8	Unmodified	_GYSSCSDG_					0	0	0		ENST00000515051.1_1_5:175956111-175956726:-|nuORF	ENST00000515051.1_1_5:175956111-175956726:-|nuORF	ENST00000515051.1_1_5:175956111-175956726:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2563098779001	1	775.25631	774.249033	1.8006	0.0013959	-7.1901	-0.0055741	-5.3894	-0.0041782	775.2533555613591	57.981	0.19218	57.981	57.861	58.053	0	594	37	1.265731	0.021588564	1.265731	258.00012	0	4.400482						139	9	2	NaN	NaN	NaN	0.84876	1	4413	4413		0.39566	0	1	8507.5			8569	7373	4980	5076	6751	6751					-0.14712114406916044
GYTSRWYHL	9	Unmodified	_GYTSRWYHL_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7881725640501	2	591.788173	1181.56179	1.5789	0.00093439	-3.4804	-0.0020597	-1.9015	-0.0011253	591.7842987258053	19.108	0.11993	19.108	19.084	19.204	0	1176	82	0.9130621	0.04963696	0.9130621	369.9818	0	20.113403						251	6	3	NaN	NaN	NaN	0.29341	1	15874	15874		19.336	8.9763	1	31088			8570	4374	4981	5077	6752	6752					-0.02172622950956793
GYTSSLSFF	9	Unmodified	_GYTSSLSFF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4672889314	1	1008.46729	1007.46001	1.9386	0.001955	-2.8649	-0.0028891	-0.9263	-0.00093414	1008.464640067829	30.293	0.072361	30.287	30.263	30.335	-0.0064106	261	40	1.4642475	0.023111463	1.462728	297.2587	0	4.6918945						57	4	2	NaN	NaN	NaN	0.62619	1	8698	8698		4.4131	0.3594	1	3210.5			8571	3243	4982	5078	6753	6753					-0.04341914093379273
GYVAGAGG	8	Unmodified	_GYVAGAGG_					0	0	0			REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3096660774002	1	651.309666	650.30239	0.9885	0.00064382	7.2577	0.004727	8.2462	0.0053708	651.3146960404823	39.066	0.1448	39.071	39.047	39.192	0.0046806	789	85	1.1483859	0.050708532	1.1468664	234.85649	0	10.370407						207	7	2	NaN	NaN	NaN	0.84651	1	1969	1969		1.6704	0	1	20006	+		8572	9285	4983	5079	6754	6754					-0.03674948842080994
GYVVWQEVF	9	Unmodified	_GYVVWQEVF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.5567726407	1	1126.55677	1125.5495	1.8985	0.0021388	0.67538	0.00076085	2.5739	0.0028996	1126.558034021651	32.539	0.19305	32.539	32.49	32.683	0	72	70	1.5758814	0.04062581	1.5758814	319.4681	0	8.235779						294	9	3	NaN	NaN	NaN	0.013281	1	13903	13903		82.96	51.285	1	34439			8573	5962;7627	4984	5080	6755	6755					-0.008256594139993467
GYVVWQEVF	9	Unmodified	_GYVVWQEVF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7820245536501	2	563.782025	1125.5495	0.89229	0.00050306	-0.5957	-0.00033584	0.29659	0.00016721	563.7810780985789	32.537	0.14482	32.534	32.486	32.631	-0.0031052	1227	97	0.88180584	0.058876753	0.8802864	357.52158	0	23.871124						241	7	4	NaN	NaN	NaN	0.16171	1	13473	13473		27.789	14.786	1	37144			8574	5962;7627	4984	5080	6756	6756					-0.008256594139993467
GYVVWQEVF	9	Unmodified	_GYVVWQEVF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.5567726407	1	1126.55677	1125.5495	0.82892	0.00093382	0.40494	0.00045619	1.2339	0.00139	1126.5570411529095	32.537	0.14483	32.534	32.51	32.655	-0.0031052	69	61	1.5776473	0.035321116	1.5761279	319.8261	0	7.160431						206	7	2	NaN	NaN	NaN	0.030696	1	13474	13474		58.2	32.085	1	30311			8575	5962;7627	4984	5080	6757	6757					-0.008256594139993467
GYVVWQEVF	9	Unmodified						0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000566672.5_1_15:72638574-72647950:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.782025	1125.5495	1.6072	0.0009061	-0.74743	-0.00042139	0.85975	0.00048471	563.7811363301183	32.539	0.12062	32.539	32.49	32.611	0	1230	61	0.8799654	0.036801934	0.8799654	356.7754		14.921051	0.0020672	-5.1934E-05	-0.00016048	NaN	27.789	227	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39226			8576	5962;7627	4984	5080							-0.008256594139993467
GYWGESKEPQ	10	Unmodified	_GYWGESKEPQ_					0	0	0			REV__ENST00000592462.5_1_17:42451888-42452560:-|nuORF	REV__ENST00000592462.5_1_17:42451888-42452560:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1180.5269290753	1	1180.52693	1179.51965	1.9577	0.0023111	-4.7303	-0.0055842	-2.7726	-0.0032732	1180.5219040729971	29.762	0.14476	29.755	29.683	29.828	-0.0070667	75	52	1.5741152	0.030027747	1.5725957	318.93304	0	6.083954						94	7	2	NaN	NaN	NaN	0.60686	1	15221	15221		14.425	3.2547	1	6351.9	+		8577	12929	4985	5081	6758	6758					-0.06292643150004551
HAADVSIM	8	Unmodified	_HAADVSIM_					0	0	0		ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.4029145356001	1	843.402915	842.395638	0.77979	0.00065768	0.23738	0.0002002	1.0172	0.00085789	843.4022563239756	30.414	0.096518	30.407	30.359	30.456	-0.0064106	405	61	1.3786905	0.035743713	1.377171	280.62894	0	7.275543						126	5	3	NaN	NaN	NaN	0.79379	1	5168	5168		10.052	0	1	9868.1			8578	7744	4986	5082	6759	6759					-0.03186392451164011
HAAFAGAR	8	Unmodified	_HAAFAGAR_					0	0	0		ENST00000563029.5_1_16:2293317-2301515:-|nuORF	ENST00000563029.5_1_16:2293317-2301515:-|nuORF	ENST00000563029.5_1_16:2293317-2301515:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.4161968344001	1	800.416197	799.40892	1.6075	0.0012866	1.6803	0.0013449	3.2877	0.0026316	800.4183267728458	36.782	0.2645	36.783	36.735	37	0.0016747	600	76	1.2621325	0.044997692	1.2606131	257.12552	0	9.167084						510	12	4	NaN	NaN	NaN	0.84887	1	4651	4651		0.32989	0	1	100150			8579	7610	4987	5083	6760	6760					0.0011922644308697272
HAALETQTL	9	Unmodified	_HAALETQTL_					0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.26145628704995	2	492.261456	982.50836	1.8682	0.00091963	0.34131	0.00016801	2.2095	0.0010876	492.2613313277149	16.734	0.2399	16.734	16.566	16.806	0	1335	52	0.8154261	0.031408787	0.8154261	331.19012	0	12.756866						194	11	3	NaN	NaN	NaN	0.043119	1	7967	7967		49.833	13.246	1	26956			8580	5049	4988	5084	6761	6761					0.016405795465175288
HAALETQTL	9	Unmodified						0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.261456	982.50836	1.1712	0.00057655	1.8566	0.00091394	3.0278	0.0014905	492.2624547703672	16.754	0.11984	16.741	16.645	16.765	-0.013294	1332	52	0.8172735	0.03140533	0.81575406	331.94043		12.755463	0.0037308	0.00069478	0.00016397	NaN	49.833	125	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22377			8581	5049	4988	5084							0.016405795465175288
HAAPAIVV	8	Unmodified	_HAAPAIVV_					0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.4617500435	1	777.46175	776.454474	0.88877	0.00069098	-8.3303	-0.0064765	-7.4415	-0.0057855	777.455338450669	35.337	0.16884	35.337	35.313	35.482	0	579	55	1.2747238	0.03236556	1.2747238	259.8203	0	6.596863						199	8	3	NaN	NaN	NaN	0.84876	1	4449	4449		0.39566	0	1	23352	+		8582	9201	4989	5085	6762	6762					0.05730451905469636
HAAPAIVV	8	Unmodified						0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	777.46175	776.454474	0.88877	0.00069098	-8.3303	-0.0064765	-7.4415	-0.0057855	777.455338450669	35.337	0.16884	35.337	35.313	35.482	0	579	55	1.2747238	0.03236556	1.2747238	259.8203		6.596863	0.0007062	-0.00052622	-0.00013927	NaN	0.39566	199	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23352	+		8583	9201	4989	5085							0.05730451905469636
HAAPAIVV	8	Unmodified						0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	777.46175	776.454474	1.0031	0.00077988	-6.7685	-0.0052622	-5.7654	-0.0044824	777.4565813092371	35.336	0.19291	35.336	35.287	35.48	-4.5776E-05	576	55	1.2765218	0.032361984	1.2750024	260.18677		6.596161	-0.0007062	0.000688	0.00013927	NaN	0.39566	188	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25635	+		8584	9201	4989	5085							0.05730451905469636
HAAPFQNIL	9	Unmodified	_HAAPFQNIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;CYFIP1|p.R1034Q|1|0.45|ENSG00000273749|chr15:22875213-22875213|C/T|missense_variant;ENST00000522892.1_1_5:156788429-156810457:+|nuORF;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7745338725501	2	505.774534	1009.53451	1.8202	0.00092062	-7.1746	-0.0036287	-5.3544	-0.0027081	506.2693205361005	23.706	0.16865	23.706	23.658	23.827	0	1314	88	0.8283535	0.053533256	0.8283535	336.31635	0	21.734833						196	8	2	NaN	NaN	NaN	0.31766	1	8961	8961		17.78	7.1754	1	30734			8585	601;6180	4990	5086	6763	6763					0.03012893508673642
HAATLVWWWH	10	Unmodified	_HAATLVWWWH_					0	0	0			REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.8276320755501	2	653.827632	1305.64071	0.77399	0.00050605	3.023	0.0019765	3.797	0.0024826	653.8290990019573	24.623	0.12056	24.61	24.586	24.707	-0.012394	1128	37	0.9424274	0.022005022	0.94090796	381.46176	0	8.90686						103	6	3	NaN	NaN	NaN	0.70746	1	18034	18034		7.5404	1.1104	1	10860	+		8586	11367	4991	5087	6764	6764					0.00011649073985608993
HAAVGAPVM	9	Unmodified	_HAAVGAPVM_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.72345542975006	2	426.723455	851.432358	1.7251	0.00073613	0.09354	3.9916E-05	1.8186	0.00077604	426.72375225551116	16.706	0.095922	16.693	16.621	16.717	-0.013294	1419	40	0.76361835	0.02408886	0.7620989	310.80634	0	9.804565						80	5	2	NaN	NaN	NaN	0.48931	1	5274	5274		10.052	2.4613	1	5469.7			8587	5421	4992	5088	6765	6765					0.0006990416541157174
HAAVGAPVM	9	Unmodified						0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	426.723455	851.432358	1.5807	0.0006745	-1.2564	-0.00053615	0.32423	0.00013835	426.72286407842114	16.71	0.14397	16.71	16.638	16.782	0	1422	37	0.7617651	0.022237062	0.7617651	310.05206		9.050873	0.0082326	-0.00051411	-0.00016687	NaN	10.052	80	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5880.5			8588	5421	4992	5088							0.0006990416541157174
HADDFIQEM	9	Unmodified	_HADDFIQEM_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2345812220501	2	553.234581	1104.45461	1.2019	0.00066491	-1.8691	-0.0010341	-0.66727	-0.00036916	553.2336490631269	21.994	0.19268	21.98	21.932	22.125	-0.013897	1272	46	0.854179	0.027650714	0.8526596	346.4005	0	11.213379						126	9	2	NaN	NaN	NaN	0.44082	1	12665	12665		12.049	3.0867	1	16367			8589	5871	4993	5089	6766	6766					-0.09343960947489904
HADDFIQEM	9	Unmodified						0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.234581	1104.45461	1.4004	0.00077474	-2.8224	-0.0015614	-1.422	-0.00078669	553.2330807719734	21.994	0.14456	21.994	21.946	22.091	0	1275	40	0.85233563	0.023963928	0.85233563	345.65295		9.718262	0.0070535	-0.00057511	-0.00016197	NaN	12.049	104	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14992			8590	5871	4993	5089							-0.09343960947489904
HADDFIQEM	9	Oxidation (M)	_HADDFIQEM(Oxidation (M))_		HADDFIQEM(1)		HADDFIQEM(45)	0	0	1		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2320385331001	2	561.232039	1120.44952	1.7175	0.0009639	1.1287	0.00063344	2.8461	0.0015973	561.2331440699879	17.258	0.23986	17.244	17.149	17.388	-0.013567	1266	70	0.85786515	0.04237944	0.8563457	347.83417	0	17.18338						362	11	4	NaN	NaN	NaN	0.054111	1	13283	13283		45.165	8.9301	1	44857			8591	5871	4993	5090	6767	6767		599			-0.10588264810098735
HADDPERVV	9	Unmodified	_HADDPERVV_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2541625712	2	519.254163	1036.49377	1.7439	0.00090553	-1.8063	-0.00093793	-0.062395	-3.2399E-05	519.253083744785	13.228	0.26423	13.228	13.132	13.397	0	1311	82	0.83019954	0.049819708	0.83019954	336.94788	0	20.220032						338	12	4	NaN	NaN	NaN	0.10945	1	10059	10059		34.454	22.405	1	46091			8592	2617	4994	5091	6768	6768					-0.023014926016230675
HADDPERVV	9	Unmodified	_HADDPERVV_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2541625712	2	519.254163	1036.49377	1.1788	0.0006121	-0.16994	-8.824E-05	1.0089	0.00052386	519.2542443583488	13.254	0.21568	13.243	13.148	13.363	-0.010098	1311	79	0.83019954	0.047966838	0.8286801	336.94788	0	19.467987						360	10	4	NaN	NaN	NaN	0.12104	1	9849	9849		32.778	19.775	1	46058			8593	2617	4994	5091	6769	6769					-0.023014926016230675
HADDSFLVL	9	Unmodified	_HADDSFLVL_					0	0	0		ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7560067684	2	508.756007	1015.49746	0.9623	0.00048957	-0.97893	-0.00049804	-0.016632	-8.4614E-06	508.7548169206874	26.915	0.12065	26.904	26.88	27.001	-0.010645	1296	64	0.8394264	0.038723588	0.83790696	340.78503	0	15.720734						180	6	3	NaN	NaN	NaN	0.47587	1	9014	9014		10.605	3.0646	1	13090			8594	4249	4995	5092	6770	6770					-0.00966822827751912
HADEKEALM	9	Unmodified	_HADEKEALM_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2449489431	2	522.244949	1042.47534	1.6368	0.00085479	1.7055	0.00089071	3.3423	0.0017455	522.2446618110861	13.373	0.12013	13.373	13.3	13.421	0	1260	34	0.8615505	0.020266235	0.8615505	349.6458	0	8.224701						125	6	3	NaN	NaN	NaN	0.064504	1	10308	10308		40.957	17.839	1	9356.8			8595	5270	4996	5093	6771	6771					-0.04419370567848091
HADEKEALM	9	Unmodified	_HADEKEALM_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2449489431	2	522.244949	1042.47534	1.628	0.0008502	-2.2742	-0.0011877	-0.6462	-0.00033747	522.2438262801362	13.421	0.071982	13.411	13.411	13.483	-0.010098	1260	31	0.8615505	0.018424809	0.8600311	349.6458	0	7.477417						63	4	2	NaN	NaN	NaN	0.51576	1	10101	10101		8.962	2.8716	1	5325.4			8596	5270	4996	5093	6772	6772					-0.04419370567848091
HADHSSLTL	9	Unmodified	_HADHSSLTL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.7434307094	2	490.743431	979.472308	0.79191	0.00038863	-1.6651	-0.00081715	-0.87321	-0.00042852	490.74251421662996	14.764	0.19205	14.752	14.68	14.872	-0.011738	1323	70	0.8228144	0.04247582	0.82129496	334.20523	0	17.252533						282	9	3	NaN	NaN	NaN	0.04947	1	7695	7695		47.136	10.549	1	49291			8597	995	4997	5094	6773	6773					-0.01824877630338051
HADHSSLTL	9	Unmodified						0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	490.743431	979.472308	1.5706	0.00077075	-1.7507	-0.00085913	-0.18009	-8.8378E-05	490.7425284558629	14.717	0.26416	14.717	14.621	14.885	0	1323	58	0.8228144	0.035092473	0.8228144	334.20523		14.253632	-0.017345	-4.5673E-05	0.00075972	NaN	47.136	307	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58586			8598	995	4997	5094							-0.01824877630338051
HADLLQPVL	9	Unmodified	_HADLLQPVL_					0	0	0		ENST00000474361.6_1_X:1719073-1720484:+|nuORF;ENSG00000197976|ENST00000313871|AKAP17A	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.29001676125	2	503.290017	1004.56548	1.75	0.00088075	-2.356	-0.0011858	-0.60603	-0.00030501	503.28913961183	25.202	0.16892	25.202	25.105	25.274	0	1296	70	0.8394264	0.042420685	0.8394264	340.83463	0	17.224182						159	8	2	NaN	NaN	NaN	0.13602	1	8776	8776		30.61	14.026	1	22253			8599	5746	4998	5095	6774	6774					0.06338046822895649
HADLSEYNM	9	Oxidation (M)	_HADLSEYNM(Oxidation (M))_		HADLSEYNM(1)		HADLSEYNM(42)	0	0	1		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.224213501	2	548.224214	1094.43387	1.3398	0.00073452	0.24883	0.00013641	1.5886	0.00087093	548.2243802364484	14.309	0.16809	14.309	14.261	14.429	0	1302	46	0.8357362	0.027674615	0.8357362	338.95953	0	11.224335						137	8	3	NaN	NaN	NaN	0.062072	1	12582	12582		41.785	13.996	1	10424			8600	1345	4999	5096	6775	6775		148			-0.10956551327171837
HADLSEYNM	9	Oxidation (M)	_HADLSEYNM(Oxidation (M))_		HADLSEYNM(1)		HADLSEYNM(71)	0	0	1		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.224213501	2	548.224214	1094.43387	1.3923	0.00076329	-1.1945	-0.00065486	0.19779	0.00010843	548.2232613599143	14.308	0.047899	14.297	14.273	14.321	-0.011218	1299	46	0.8375814	0.027674615	0.83606195	339.70792	0	11.224335						96	3	3	NaN	NaN	NaN	0.021105	1	12253	12253		70.6	44.485	1	9343.2			8601	1345	4999	5096	6776	6776		148			-0.10956551327171837
HADPTELAL	9	Unmodified	_HADPTELAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.74818173629995	2	483.748182	965.481811	1.6463	0.0007964	-1.9459	-0.00094134	-0.29961	-0.00014494	483.7472019668007	20.887	0.16854	20.887	20.838	21.007	0	1353	82	0.8043377	0.04990071	0.8043377	326.76602	0	20.27243						332	8	4	NaN	NaN	NaN	0.03623	1	7496	7496		52.758	24.092	1	58079			8602	2653	5000	5097	6777	6777					-0.002311093448156498
HADPTELAL	9	Unmodified	_HADPTELAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.74818173629995	2	483.748182	965.481811	1.3773	0.00066626	-1.022	-0.00049441	0.35524	0.00017185	483.7476255632552	20.887	0.19262	20.873	20.825	21.017	-0.014088	1353	118	0.8043377	0.072032034	0.80281824	326.76602	0	29.263367						322	9	4	NaN	NaN	NaN	0.02781	1	7347	7347		61.977	28.278	1	56973			8603	2653	5000	5097	6778	6778					-0.002311093448156498
HADPTELAL	9	Unmodified	_HADPTELAL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.489087006	1	966.489087	965.481811	0.9078	0.00087738	1.4864	0.0014366	2.3942	0.002314	966.4914933561073	20.911	0.096373	20.897	20.849	20.945	-0.014086	297	52	1.4428991	0.03025794	1.4413797	293.09662	0	6.146332						145	5	3	NaN	NaN	NaN	0.036546	1	7349	7349		52.624	27.663	1	11685			8604	2653	5000	5097	6779	6779					-0.002311093448156498
HADQAEIRSL	10	Unmodified	_HADQAEIRSL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.29381904795	2	570.293819	1138.57309	1.8707	0.0010669	-1.6785	-0.00095725	0.19222	0.00010962	570.2930675260315	14.549	0.40803	14.549	14.453	14.861	0	1239	103	0.87444305	0.062583566	0.87444305	354.48734	0	25.370514						880	18	5	NaN	NaN	NaN	0.00025363	1	14398	14398		99.85	53.263	1	336660			8605	2241;2242	5001	5098	6780	6780					0.009341543525124507
HADQAEIRSL	10	Unmodified	_HADQAEIRSL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3;ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.29381904795	2	570.293819	1138.57309	1.4356	0.0008187	-0.58843	-0.00033558	0.84715	0.00048313	570.2937906527978	14.62	0.40779	14.609	14.513	14.921	-0.011218	1236	103	0.876284	0.062583566	0.8747646	355.23364	0	25.370514						863	18	5	NaN	NaN	NaN	1.9951E-08	1	13930	13930		130.47	79.005	1	336530			8606	2241;2242	5001	5098	6781	6781					0.009341543525124507
HADQEYVL	8	Unmodified	_HADQEYVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.73253167210004	2	487.732532	973.45051	2.3291	0.001136	3.5118	0.0017128	5.841	0.0028488	487.73185993695773	18.292	0.14386	18.292	18.221	18.364	0	1341	73	0.8117308	0.044324994	0.8117308	329.73157	0	18.005188						212	7	2	NaN	NaN	NaN	0.78967	1	7694	7694		10.605	3.7418	1	27445			8607	1863	5002	5099	6782	6782					-0.03727682378894315
HADQEYVL	8	Unmodified	_HADQEYVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4577868776001	1	974.457787	973.45051	2.3507	0.0022906	-0.33337	-0.00032485	2.0173	0.0019658	974.4571580182844	18.314	0.14401	18.3	18.252	18.396	-0.01395	291	37	1.446459	0.021355152	1.4449396	293.78592	0	4.337372						114	7	2	NaN	NaN	NaN	0.55996	1	7545	7545		27.789	8.5041	1	9142.3			8608	1863	5002	5099	6783	6783					-0.03727682378894315
HADTRSFIL	9	Unmodified	_HADTRSFIL_					0	0	0		nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2827230454001	2	530.282723	1058.55089	1.0858	0.00057577	0.95704	0.0005075	2.0428	0.0010833	530.2826270775016	19.442	0.19242	19.428	19.356	19.549	-0.014141	1251	52	0.8670771	0.031317174	0.8655577	351.819	0	12.707001						182	9	3	NaN	NaN	NaN	0.33202	1	10794	10794		16.858	5.688	1	18820			8609	1271	5003	5100	6784	6784					0.023959746747550525
HADTRSFIL	9	Unmodified						0	0	0		nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	nc|ENSG00000100722|Q6PJT7-5|ZC3H14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.282723	1058.55089	1.6889	0.00089557	0.35797	0.00018983	2.0468	0.0010854	530.2825964980937	19.3	0.19199	19.3	19.204	19.396	0	1251	43	0.8670771	0.025789201	0.8670771	351.819		10.46402	-0.064029	-0.00022791	0.00075972	NaN	16.858	149	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14076			8610	1271	5003	5100							0.023959746747550525
HADVGVALL	9	Unmodified	_HADVGVALL_					0	0	0		ENSG00000105726|ENST00000357324|ATP13A1;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000473243.5_1_19:19758362-19760762:-|nuORF;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF	ENSG00000105726|ENST00000357324|ATP13A1	ENSG00000105726|ENST00000357324|ATP13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.75580980315004	2	447.75581	893.497067	1.4704	0.00065838	-1.6996	-0.00076099	-0.22916	-0.00010261	447.754938699848	23.248	0.072336	23.248	23.2	23.272	0	1347	37	0.8080346	0.022179246	0.8080346	328.63898	0	9.02063						65	4	2	NaN	NaN	NaN	0.14301	1	5980	5980		29.598	14.423	1	6920.5			8611	1563	5004	5101	6785	6785					0.04605802243054313
HADVGVALL	9	Unmodified						0	0	0		ENSG00000105726|ENST00000357324|ATP13A1;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000473243.5_1_19:19758362-19760762:-|nuORF;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF	ENSG00000105726|ENST00000357324|ATP13A1	ENSG00000105726|ENST00000357324|ATP13A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	447.75581	893.497067	1.7764	0.00079541	-2.9062	-0.0013013	-1.1297	-0.00050584	447.754619905496	23.272	0.048258	23.258	23.234	23.283	-0.013294	1350	49	0.80618626	0.029569209	0.8046668	327.88724		12.026184	0.005157	-0.00051432	-0.0016839	NaN	29.598	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5880.2			8612	1563	5004	5101							0.04605802243054313
HAEIAQPLL	9	Unmodified	_HAEIAQPLL_					0	0	0		ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.28219172915004	2	496.282192	990.549831	1.1076	0.00054969	-2.3283	-0.0011555	-1.2207	-0.00060582	496.280982067993	21.416	0.12033	21.402	21.354	21.475	-0.014004	1308	43	0.83204526	0.025839448	0.8305259	337.90222	0	10.493683						127	6	3	NaN	NaN	NaN	0.16171	1	8076	8076		27.789	5.9538	1	14117			8613	1890	5005	5102	6786	6786					0.054177603058633395
HAEIAQPLL	9	Unmodified						0	0	0		ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.282192	990.549831	1.5289	0.00075876	-2.6614	-0.0013208	-1.1325	-0.00056204	496.2807708627769	21.392	0.12036	21.392	21.368	21.488	0	1305	46	0.83389086	0.027683675	0.83389086	338.65173		11.242615	-0.0050684	-0.00019753	0.0016825	NaN	27.789	107	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12792			8614	1890	5005	5102							0.054177603058633395
HAELTVPVL	9	Unmodified	_HAELTVPVL_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000127220|ENST00000247706|ABHD8	MYO9B-ABHD8|1|fusion	MYO9B-ABHD8|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.7845672426001	2	489.784567	977.554582	2.0077	0.00098336	-2.6553	-0.0013005	-0.64756	-0.00031716	489.78295947633916	25.177	0.048262	25.165	25.141	25.189	-0.012011	1329	46	0.81912065	0.027695596	0.8176012	332.714	0	11.249542						53	3	2	NaN	NaN	NaN	0.31737	1	7665	7665		17.799	6.6286	1	3630.8			8615	7890	5006	5103	6787	6787					0.06490644448626881
HAEQERVAL	9	Unmodified	_HAEQERVAL_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.777804843	2	526.777805	1051.54106	1.1206	0.00059028	0.18887	9.9491E-05	1.3094	0.00068978	526.777798995306	13.493	0.12003	13.483	13.435	13.555	-0.010098	1293	58	0.84127116	0.03505838	0.8397517	341.3774	0	14.226227						123	6	3	NaN	NaN	NaN	0.21451	1	10478	10478		24.4	5.2367	1	10927			8616	1025	5007	5104	6788	6788					0.0173478666936262
HAEQERVAL	9	Unmodified						0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.777805	1051.54106	1.7939	0.00094499	-0.28194	-0.00014852	1.512	0.00079647	526.7775326528792	13.445	0.21616	13.445	13.397	13.613	0	1293	58	0.84127116	0.035062134	0.84127116	341.3774		14.227783	-0.019317	-0.00028463	0.00075972	NaN	24.4	137	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13225			8617	1025	5007	5104							0.0173478666936262
HAFQLEHIM	9	Oxidation (M)	_HAFQLEHIM(Oxidation (M))_		HAFQLEHIM(1)		HAFQLEHIM(58)	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2765834224999	2	571.276583	1140.53861	1.9965	0.0011405	0.62325	0.00035605	2.6197	0.0014966	571.2768123807753	17.621	0.11988	17.621	17.573	17.693	0	1185	49	0.90755045	0.02939701	0.90755045	367.90103	0	11.916901						151	6	3	NaN	NaN	NaN	0.030545	1	14457	14457		58.398	39.234	1	12833			8618	5678;276	5008	5105	6789	6789		19			-0.026033850599560537
HAFQLEHIM	9	Oxidation (M)	_HAFQLEHIM(Oxidation (M))_		HAFQLEHIM(1)		HAFQLEHIM(41)	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2765834224999	2	571.276583	1140.53861	1.5778	0.00090139	-1.3259	-0.00075746	0.25194	0.00014393	571.2748126081194	17.738	0.1438	17.724	17.652	17.796	-0.013786	1182	52	0.9093879	0.03123939	0.90786844	368.64587	0	12.663757						131	7	2	NaN	NaN	NaN	0.064504	1	13994	13994		40.957	26.532	1	13283			8619	5678;276	5008	5105	6790	6790		19			-0.026033850599560537
HAFSVEPLL	9	Unmodified	_HAFSVEPLL_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1;ENST00000593832.1_1_19:17691448-17692250:+|nuORF	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.7767422105	2	506.776742	1011.53893	2.2031	0.0011165	0.23846	0.00012084	2.4416	0.0012373	506.7768764687217	25.781	0.14478	25.781	25.732	25.877	0	1302	94	0.8357362	0.057194293	0.8357362	339.3047	0	23.220581						292	7	3	NaN	NaN	NaN	0.17818	1	9047	9047		26.732	11.556	1	43251			8620	2636	5009	5106	6791	6791					0.03362357931564475
HAFVELHEF	9	Unmodified	_HAFVELHEF_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.77727352675	2	564.777274	1127.53999	1.7242	0.00097377	-1.9073	-0.0010772	-0.18318	-0.00010345	564.7764537698138	21.175	0.12042	21.175	21.151	21.272	0	1140	49	0.93509084	0.029352665	0.93509084	379.1175	0	11.900574						202	6	4	NaN	NaN	NaN	0.0072287	1	13996	13996		98.041	66.366	1	42192			8621	1690	5010	5107	6792	6792					-0.01867427699539803
HAFVELHEF	9	Unmodified	_HAFVELHEF_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.77727352675	2	564.777274	1127.53999	1.2465	0.000704	-1.3332	-0.00075294	-0.086649	-4.8937E-05	564.7765683751787	21.272	0.19236	21.258	21.21	21.402	-0.014004	1140	55	0.93509084	0.033025324	0.9335714	379.1175	0	13.389587						277	9	4	NaN	NaN	NaN	0.10956	1	13552	13552		34.439	23.834	1	43531			8622	1690	5010	5107	6793	6793					-0.01867427699539803
HAFVQDTTL	9	Unmodified	_HAFVQDTTL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.26145628705	2	516.261456	1030.50836	1.9541	0.0010088	-5.2109	-0.0026902	-3.2568	-0.0016813	516.2586756984598	19.132	0.19192	19.132	19.06	19.252	0	1293	70	0.84127116	0.042448223	0.84127116	341.46747	0	17.229523						191	9	2	NaN	NaN	NaN	0.41766	1	9793	9793		13.003	1.8325	1	21707			8623	3074	5011	5108	6794	6794					-0.005674204534898308
HAFVQDTTL	9	Unmodified	_HAFVQDTTL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.26145628705	2	516.261456	1030.50836	1.4166	0.00073135	-6.7077	-0.0034629	-5.291	-0.0027316	516.2571761720349	19.178	0.12017	19.164	19.14	19.26	-0.014141	1293	55	0.84127116	0.033214986	0.8397517	341.46747	0	13.4817505						141	6	2	NaN	NaN	NaN	0.074859	1	9592	9592		39.459	19.01	1	15142			8624	3074	5011	5108	6795	6795					-0.005674204534898308
HAGDGGEL	8	Unmodified	_HAGDGGEL_					0	0	0			REV__ENST00000272217.6_1_1:202104910-202113731:-|nuORF	REV__ENST00000272217.6_1_1:202104910-202113731:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3318580824999	1	755.331858	754.324582	2.4048	0.0018164	-5.7115	-0.0043141	-3.3067	-0.0024977	755.3278570917898	25.636	0.072332	25.624	25.576	25.648	-0.0116	579	43	1.2747238	0.025170445	1.2732043	259.95264	0	5.132965						75	4	2	NaN	NaN	NaN	0.80071	1	4055	4055		9.1232	0	1	6387.1	+		8625	11587	5012	5109	6796	6796					-0.062407691643443286
HAGDGGEL	8	Unmodified						0	0	0			REV__ENST00000272217.6_1_1:202104910-202113731:-|nuORF	REV__ENST00000272217.6_1_1:202104910-202113731:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	755.331858	754.324582	2.4048	0.0018164	-5.7115	-0.0043141	-3.3067	-0.0024977	755.3278570917898	25.636	0.072332	25.624	25.576	25.648	-0.0116	579	43	1.2747238	0.025170445	1.2732043	259.95264		5.132965	-0.0059214	-2.064E-05	-0.0016587	NaN	9.1232	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6387.1	+		8626	11587	5012	5109							-0.062407691643443286
HAGEASCECQE	11	Unmodified	_HAGEASCECQE_					0	0	0		ENSG00000160961|ENST00000292530|ZNF333	ENSG00000160961|ENST00000292530|ZNF333	ENSG00000160961|ENST00000292530|ZNF333	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.2082374733001	2	582.208237	1162.40192	0.77994	0.00045409	4.4125	0.002569	5.1924	0.0030231	582.2113391229217	31.838	0.26543	31.833	31.785	32.05	-0.0044155	1218	43	0.8873258	0.025758564	0.8858064	359.62155	0	10.439575						210	12	4	NaN	NaN	NaN	0.63477	1	14699	14699		11.739	6.0447	1	32867			8627	4085	5013	5110	6797	6797					-0.17278287072599596
HAGGAAVD	8	Unmodified	_HAGGAAVD_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3263787741	1	697.326379	696.319102	0.36252	0.0002528	-7.5755	-0.0052826	-7.213	-0.0050298	697.3214183197749	39.093	0.16888	39.093	39.044	39.213	0	699	97	1.2026466	0.057810068	1.2026466	245.61856	0	11.806641						152	8	2	NaN	NaN	NaN	0.84876	1	3163	3163		0.39566	0	1	14683	+		8628	9454	5014	5111	6798	6798					-0.04120447956142925
HAGGAAVD	8	Unmodified						0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	697.326379	696.319102	0.36252	0.0002528	-7.5755	-0.0052826	-7.213	-0.0050298	697.3214183197749	39.093	0.16888	39.093	39.044	39.213	0	699	97	1.2026466	0.057810068	1.2026466	245.61856		11.806641	0.010748	0.0010184	-0.00014313	NaN	0.39566	152	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14683	+		8629	9454	5014	5111							-0.04120447956142925
HAGGVTGG	8	Unmodified	_HAGGVTGG_					0	0	0		ENST00000526770.5_1_11:67378371-67379926:+|nuORF;nc|ENSG00000167792|P49821-2|NDUFV1;ENSG00000167792|ENST00000322776|NDUFV1	ENST00000526770.5_1_11:67378371-67379926:+|nuORF	ENST00000526770.5_1_11:67378371-67379926:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3158140878	1	655.315814	654.308538	0.91887	0.00060215	7.4182	0.0048613	8.3371	0.0054634	655.3205099981701	22.621	0.096478	22.607	22.583	22.68	-0.01354	765	91	1.1628724	0.054330587	1.161353	237.78917	0	11.109756						166	5	2	NaN	NaN	NaN	0.84651	1	2077	2077		1.6704	0	1	24021			8630	4569	5015	5112	6799	6799					-0.0324443061057309
HAGPEPQAL	9	Unmodified	_HAGPEPQAL_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.23524153654995	2	460.235242	918.45593	0.88263	0.00040622	-2.3299	-0.0010723	-1.4473	-0.00066608	460.2338992347377	14.981	0.19216	14.981	14.957	15.15	0	1398	55	0.77658504	0.03333026	0.77658504	315.71808	0	13.5503235						103	9	2	NaN	NaN	NaN	0.31737	1	6387	6387		17.799	1.3823	1	8387.6			8631	2767	5016	5113	6800	6800					-0.006559587964375169
HAGPEPQAL	9	Unmodified	_HAGPEPQAL_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.23524153654995	2	460.235242	918.45593	0.84832	0.00039043	-0.87366	-0.00040209	-0.025338	-1.1661E-05	460.2346372945415	15.004	0.096238	14.992	14.968	15.064	-0.011738	1398	46	0.77658504	0.027779698	0.7750656	315.71808	0	11.293762						85	5	2	NaN	NaN	NaN	0.14301	1	6253	6253		29.598	4.6373	1	8538.5			8632	2767	5016	5113	6801	6801					-0.006559587964375169
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	1.1792	0.00083531	-10.442	-0.0073968	-9.2627	-0.0065615	708.3709475461351	34.614	0.16884	34.614	34.565	34.734	0	747	61	1.1737292	0.03618157	1.1737292	239.64049	0	7.387192						139	8	2	NaN	NaN	NaN	0.84876	1	3361	3361		0.39566	0.065779	1	10160	+		8633	10354	5017	5114	6802	6802					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.30568	0.00021654	-8.1805	-0.0057949	-7.8749	-0.0055784	708.3723383655391	35.144	0.19308	35.144	35.096	35.289	0	717	76	1.1918083	0.045156717	1.1918083	243.33171	0	9.219666						282	9	3	NaN	NaN	NaN	0.84876	1	3363	3363		0.39566	0	1	32883	+		8634	10354	5017	5114	6803	6803					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.34148	0.00024189	-7.6351	-0.0054085	-7.2936	-0.0051666	708.3729719452148	31.284	0.072403	31.284	31.259	31.332	0	735	67	1.1809633	0.039765716	1.1809633	241.11745	0	8.118942						129	4	3	NaN	NaN	NaN	0.84876	1	3366	3366		0.39566	0.12027	1	10609	+		8635	10354	5017	5114	6804	6804					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.49134	0.00034805	-7.5356	-0.005338	-7.0442	-0.00499	708.3736919233934	33.552	0.14466	33.552	33.48	33.624	0	747	106	1.1737292	0.0632534	1.1737292	239.64047	0	12.914459						281	7	4	NaN	NaN	NaN	0.84876	1	3367	3367		0.39566	0.065779	1	32029	+		8636	10354	5017	5114	6805	6805					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.77657	0.0005501	-7.4181	-0.0052548	-6.6415	-0.0047047	708.3733521628589	35.651	0.28934	35.651	35.578	35.868	0	726	82	1.1863867	0.04879546	1.1863867	242.22475	0	9.96257						444	13	3	NaN	NaN	NaN	0.84876	1	3369	3369		0.39566	0	1	68148	+		8637	10354	5017	5114	6806	6806					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.81017	0.00057391	-7.1011	-0.0050303	-6.291	-0.0044564	708.3737865326045	34.155	0.096458	34.155	34.131	34.228	0	672	46	1.2188909	0.027065039	1.2188909	248.86113	0	5.525879						77	5	2	NaN	NaN	NaN	0.84876	1	3372	3372		0.39566	0	1	5032.6	+		8638	10354	5017	5114	6807	6807					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.78371	0.00055516	-7.9888	-0.0056591	-7.2051	-0.0051039	708.3734808729688	33.309	0.072376	33.307	33.259	33.331	-0.0024757	717	46	1.1918083	0.027102828	1.1902889	243.33171	0	5.5335846						82	4	2	NaN	NaN	NaN	0.84876	1	3300	3300		0.39566	0	1	6044.3	+		8639	10354	5017	5114	6808	6808					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.35633	0.00025242	-7.1714	-0.0050801	-6.8151	-0.0048277	708.3734785046851	42.624	0.23992	42.634	42.538	42.778	0.0097351	693	58	1.2062578	0.034308076	1.2047384	246.28183	0	7.0046997						176	11	2	NaN	NaN	NaN	0.84876	1	3302	3302		0.39566	0	1	12952	+		8640	10354	5017	5114	6809	6809					0.006081351774582799
HAGPGKAA	8	Unmodified	_HAGPGKAA_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.53003	0.00037546	-7.1933	-0.0050956	-6.6633	-0.0047201	708.3740090160153	35.625	0.1929	35.626	35.577	35.77	0.00053024	723	97	1.1881942	0.057810068	1.1866747	242.59377	0	11.803085						420	9	4	NaN	NaN	NaN	0.84876	1	3304	3304		0.39566	0	1	59318	+		8641	10354	5017	5114	6810	6810					0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.30568	0.00021654	-8.1805	-0.0057949	-7.8749	-0.0055784	708.3723383655391	35.144	0.19308	35.144	35.096	35.289	0	717	76	1.1918083	0.045156717	1.1918083	243.33171		9.219666	0.000753	0.00010181	-0.00014371	NaN	0.39566	282	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32883	+		8642	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.34148	0.00024189	-7.6351	-0.0054085	-7.2936	-0.0051666	708.3729719452148	31.284	0.072403	31.284	31.259	31.332	0	735	67	1.1809633	0.039765716	1.1809633	241.11745		8.118942	0.0030445	9.63E-05	-0.00014429	NaN	0.39566	129	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10609	+		8643	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.49134	0.00034805	-7.5356	-0.005338	-7.0442	-0.00499	708.3736919233934	33.552	0.14466	33.552	33.48	33.624	0	747	106	1.1737292	0.0632534	1.1737292	239.64047		12.914459	0.12255	7.4497E-05	-0.0082799	NaN	0.39566	281	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32029	+		8644	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.77657	0.0005501	-7.4181	-0.0052548	-6.6415	-0.0047047	708.3733521628589	35.651	0.28934	35.651	35.578	35.868	0	726	82	1.1863867	0.04879546	1.1863867	242.22475		9.96257	0.012539	-9.4437E-05	-0.000144	NaN	0.39566	444	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68148	+		8645	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.81017	0.00057391	-7.1011	-0.0050303	-6.291	-0.0044564	708.3737865326045	34.155	0.096458	34.155	34.131	34.228	0	672	46	1.2188909	0.027065039	1.2188909	248.86113		5.525879	0	0	0	NaN	0.39566	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5032.6	+		8646	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.378749	707.371472	0.77822	0.00055128	-8.0583	-0.0057083	-7.2801	-0.005157	708.3733506195997	31.283	0.096529	31.277	31.253	31.35	-0.0050716	732	70	1.1827712	0.04156649	1.1812518	241.48659		8.486649	-0.0030445	-0.0002035	0.00014429	NaN	0.39566	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8841.8	+		8647	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.378749	707.371472	0.78371	0.00055516	-7.9888	-0.0056591	-7.2051	-0.0051039	708.3734808729688	33.309	0.072376	33.307	33.259	33.331	-0.0024757	717	46	1.1918083	0.027102828	1.1902889	243.33171		5.5335846	-0.12255	-0.00024655	0.0082799	NaN	0.39566	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6044.3	+		8648	10354	5017	5114							0.006081351774582799
HAGPGKAA	8	Unmodified						0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.378749	707.371472	0.53003	0.00037546	-7.1933	-0.0050956	-6.6633	-0.0047201	708.3740090160153	35.625	0.1929	35.626	35.577	35.77	0.00053024	723	97	1.1881942	0.057810068	1.1866747	242.59377		11.803085	-0.012539	6.4805E-05	0.000144	NaN	0.39566	420	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59318	+		8649	10354	5017	5114							0.006081351774582799
HAGSELLQR	9	Unmodified	_HAGSELLQR_					0	0	0		nc|ENSG00000127191|Q12933-4|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	nc|ENSG00000127191|Q12933-4|TRAF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7725224998501	2	505.772522	1009.53049	1.7512	0.00088572	-1.4772	-0.00074711	0.27406	0.00013861	505.7717961254207	12.006	0.43186	11.998	11.854	12.286	-0.0081863	1290	91	0.84311575	0.05534631	0.8415963	342.30988	0	22.470947						917	19	5	NaN	NaN	NaN	0.028349	1	8795	8795		61.271	11.31	1	657520			8650	2529	5018	5115	6811	6811					0.026108040149665612
HAHERGTMRA	10	Unmodified	_HAHERGTMRA_					0	0	0			REV__nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	REV__nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.19296244760005	3	389.192962	1164.55706	1.8609	0.00072426	6.6075	0.0025716	8.4684	0.0032958	389.5304686706496	11.788	0.072002	11.788	11.764	11.836	0	1434	25	0.75435036	0.014832735	0.75435036	458.57794	0	9.016998						40	4	2	NaN	NaN	NaN	0.77144	1	15298	15298		2.239	0	1	2603.8	+		8651	13249	5019	5116	6812	6812					-0.018638303653460753
HAHLDIEAF	9	Unmodified	_HAHLDIEAF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.76162346255	2	526.761623	1051.50869	1.6197	0.00085321	-0.0024596	-1.2956E-06	1.6173	0.00085191	526.7614421407377	20.549	0.24077	20.549	20.501	20.742	0	1257	112	0.86339295	0.06815356	0.86339295	350.35428	0	27.655853						597	11	5	NaN	NaN	NaN	0.02781	1	10683	10683		61.977	23.059	1	285020			8652	2661	5020	5117	6813	6813					-0.015000007336311683
HAIAGELDL	9	Unmodified	_HAIAGELDL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.75072442525	2	469.750724	937.486896	0.94906	0.00044582	-2.0178	-0.00094784	-1.0687	-0.00050202	469.7499351472068	21.826	0.048107	21.812	21.788	21.836	-0.013895	1335	34	0.8154261	0.02032113	0.81390667	331.4096	0	8.259003						45	3	2	NaN	NaN	NaN	0.45297	1	6630	6630		11.548	0.94349	1	3620.1			8653	3446	5021	5118	6814	6814					0.01565194517809232
HAIAGELDL	9	Unmodified						0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	469.750724	937.486896	1.4434	0.00067804	0.62153	0.00029197	2.0649	0.00097	469.75130890990374	21.802	0.096283	21.802	21.754	21.85	0	1338	34	0.81357855	0.02032113	0.81357855	330.6587		8.259003	-0.0049979	0.0013992	-0.00016407	NaN	11.548	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4455.5			8654	3446	5021	5118							0.01565194517809232
HAIAGLVFAAS	11	Unmodified	_HAIAGLVFAAS_					0	0	0			REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7954662799	2	528.795466	1055.57638	2.2109	0.0011691	-2.8749	-0.0015202	-0.66398	-0.00035111	528.7938075740126	18.628	0.071922	18.628	18.604	18.676	0	1281	40	0.84864825	0.023969114	0.84864825	344.35394	0	9.725891						85	4	2	NaN	NaN	NaN	0.63005	1	10907	10907		12.049	0	1	14457	+		8655	13334	5022	5119	6815	6815					0.050814491971550524
HAIAGLVFAAS	11	Unmodified						0	0	0			REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.795466	1055.57638	2.2109	0.0011691	-2.8749	-0.0015202	-0.66398	-0.00035111	528.7938075740126	18.628	0.071922	18.628	18.604	18.676	0	1281	40	0.84864825	0.023969114	0.84864825	344.35394		9.725891	0	0	0	NaN	12.049	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14457	+		8656	13334	5022	5119							0.050814491971550524
HAIEDKETI	9	Unmodified	_HAIEDKETI_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;ENST00000590485.1_1_19:5641888-5648065:+|nuORF;ENST00000586934.5_1_19:5623180-5651054:+|nuORF	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2720209733501	2	528.272021	1054.52949	1.5361	0.00081147	-0.69097	-0.00036502	0.84511	0.00044645	528.2718744302292	13.228	0.072076	13.228	13.204	13.276	0	1224	40	0.883646	0.02391994	0.883646	358.55945	0	9.706055						69	4	2	NaN	NaN	NaN	0.041983	1	10838	10838		50.315	5.1502	1	6841.3			8657	4065	5023	5120	6816	6816					0.0044054485538254085
HAIEDKETI	9	Unmodified	_HAIEDKETI_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;ENST00000590485.1_1_19:5641888-5648065:+|nuORF;ENST00000586934.5_1_19:5623180-5651054:+|nuORF	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2720209733501	2	528.272021	1054.52949	1.3089	0.00069146	-1.3062	-0.00069001	0.0027392	1.447E-06	528.2711507259286	13.254	0.095834	13.243	13.219	13.315	-0.010098	1224	37	0.883646	0.022081137	0.88212657	358.55945	0	8.95993						66	5	2	NaN	NaN	NaN	0.38313	1	10609	10609		14.425	3.2547	1	5028.9			8658	4065	5023	5120	6817	6817					0.0044054485538254085
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5360371986002	1	996.536037	995.528761	1.6554	0.0016497	-1.1921	-0.001188	0.46332	0.00046172	996.5347666407963	20.742	0.096458	20.742	20.694	20.79	0	267	58	1.4606913	0.03378904	1.4606913	296.58472	0	6.8606567						117	5	2	NaN	NaN	NaN	0.078597	1	8415	8415		38.918	19.754	1	14987			8659	3605	5024	5121	6818	6818					0.030817502063428037
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77165683260006	2	498.771657	995.528761	1.4949	0.00074563	1.9701	0.00098263	3.465	0.0017283	498.7728234466525	20.742	0.19284	20.742	20.694	20.887	0	1314	67	0.8283535	0.04060048	0.8283535	336.3799	0	16.487152						291	9	2	NaN	NaN	NaN	0.36492	1	8417	8417		15.175	1.1338	1	60714			8660	3605	5024	5121	6819	6819					0.030817502063428037
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5360371986002	1	996.536037	995.528761	1.2696	0.0012652	0.99976	0.0009963	2.2694	0.0022615	996.5367333157445	20.766	0.14443	20.752	20.704	20.849	-0.014086	270	58	1.458913	0.03378904	1.4573935	296.22363	0	6.860626						128	7	2	NaN	NaN	NaN	0.12945	1	8247	8247		31.561	11.006	1	14571			8661	3605	5024	5121	6820	6820					0.030817502063428037
HAIEESVVL	9	Unmodified	_HAIEESVVL_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENSG00000147677|ENST00000521861|EIF3H	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.77165683260006	2	498.771657	995.528761	0.8345	0.00041622	3.5651	0.0017782	4.3996	0.0021944	498.77357037631504	20.766	0.16854	20.752	20.704	20.873	-0.014086	1311	76	0.83019954	0.046129405	0.8286801	337.12952	0	18.73236						272	8	2	NaN	NaN	NaN	0.17818	1	8249	8249		26.732	11.556	1	68367			8662	3605	5024	5121	6821	6821					0.030817502063428037
HAIEREFRIM	10	Unmodified	_HAIEREFRIM_					0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000502746.5_1_12:112153629-112167643:+|nuORF;ENST00000514847.5_1_12:112150343-112159544:+|nuORF	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.56428482269996	3	434.564285	1300.67103	1.7548	0.00076258	-0.93678	-0.00040709	0.81804	0.00035549	434.56414008613405	18.149	0.14389	18.149	18.125	18.268	0	1398	28	0.77658504	0.016666055	0.77658504	471.51685	0	10.11908						82	7	2	NaN	NaN	NaN	0.22448	1	18796	18796		26.96	8.7267	1	9829.4			8663	2	5025	5122	6822	6822					0.03271639676859195
HAIETEEGL	9	Unmodified	_HAIETEEGL_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7430963584	2	499.743096	997.47164	1.7329	0.000866	0.63282	0.00031625	2.3657	0.0011822	499.74383605860055	16.158	0.096008	16.158	16.134	16.23	0	1332	49	0.8172735	0.029562771	0.8172735	331.8717	0	12.004639						113	5	2	NaN	NaN	NaN	0.049695	1	8471	8471		47.04	30.456	1	11564			8664	873	5026	5123	6823	6823					-0.027197170700446804
HAIETEEGL	9	Unmodified	_HAIETEEGL_					0	0	0		nc|ENSG00000077684|Q6IE81-3|JADE1;ENSG00000102221|ENST00000614628|JADE3;nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	nc|ENSG00000077684|Q6IE81-3|JADE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.7430963584	2	499.743096	997.47164	1.7826	0.00089085	0.62008	0.00030988	2.4027	0.0012007	499.7429087863966	16.179	0.11989	16.166	16.142	16.262	-0.012993	1338	49	0.81357855	0.02956599	0.8120591	330.37128	0	12.00592						131	6	2	NaN	NaN	NaN	0.078597	1	8294	8294		38.918	18.362	1	15111			8665	873	5026	5123	6824	6824					-0.027197170700446804
HAKVKESGFRR	11	Unmodified	_HAKVKESGFRR_					0	0	0			REV__ENST00000511661.2_1_5:55777356-55777587:-|nuORF	REV__ENST00000511661.2_1_5:55777356-55777587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.8731022117	2	657.873102	1313.73165	0.78179	0.00051432	-3.1002	-0.0020396	-2.3185	-0.0015252	657.8719312082202	41.835	0.1682	41.835	41.811	41.979	0	1173	58	0.91489893	0.034895778	0.91489893	370.29532	0	14.123688						195	8	4	NaN	NaN	NaN	0.77883	1	19016	19016		0.44583	0.21569	1	15592	+		8666	12538	5027	5124	6825	6825					0.08733493051454388
HALDRGLGGY	10	Unmodified	_HALDRGLGGY_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7725224998502	2	529.772522	1057.53049	1.5189	0.00080466	-5.6067	-0.0029703	-4.0878	-0.0021656	529.7694188978262	24.598	0.14463	24.598	24.526	24.671	0	1230	103	0.8799654	0.06263775	0.8799654	357.05292	0	25.415741						210	7	3	NaN	NaN	NaN	0.62092	1	10984	10984		13.463	1.4144	1	56838			8667	4939	5028	5125	6826	6826					0.004028040149705703
HALDSLPHGI	10	Unmodified	_HALDSLPHGI_					0	0	0			REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2827230454001	2	530.282723	1058.55089	1.6889	0.00089557	0.35797	0.00018983	2.0468	0.0010854	530.2825964980937	19.3	0.19199	19.3	19.204	19.396	0	1251	43	0.8670771	0.025789201	0.8670771	351.819	0	10.46402						149	9	3	NaN	NaN	NaN	0.56921	1	11034	11034		16.584	6.8382	1	14076	+		8668	11337	5029	5126	6827	6827					0.023959746747550525
HALDYADEL	9	Unmodified	_HALDYADEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7430963584	2	523.743096	1045.47164	1.0311	0.00054003	0.00065542	3.4327E-07	1.0317	0.00054037	523.7427643588306	21.079	0.14445	21.065	21.017	21.162	-0.014004	1287	49	0.8449601	0.029505253	0.84344065	342.90005	0	11.973755						177	7	3	NaN	NaN	NaN	0.20577	1	10219	10219		24.961	9.7856	1	21768			8669	3801	5030	5127	6828	6828					-0.04927717070063409
HALGESHAF	9	Unmodified	_HALGESHAF_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.73286602310003	2	484.732866	967.451179	2.4765	0.0012004	-2.0543	-0.0009958	0.42213	0.00020462	484.7320209442587	13.661	0.048018	13.661	13.637	13.685	0	1293	31	0.84127116	0.018446803	0.84127116	341.76065	0	7.4938965						52	3	2	NaN	NaN	NaN	0.12945	1	7535	7535		31.561	15.144	1	4347.6			8670	5339	5031	5128	6829	6829					-0.03384842939192367
HALLFREVW	9	Unmodified	_HALLFREVW_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.82455807035	2	585.824558	1169.63456	1.0856	0.00063595	-7.9186	-0.0046389	-6.833	-0.004003	585.8200268087202	28.29	0.12061	28.281	28.233	28.354	-0.0089779	1212	67	0.8910048	0.040447116	0.88948536	361.08646	0	16.39151						216	6	3	NaN	NaN	NaN	0.46215	1	14947	14947		11.17	2.2084	1	28844	+		8671	9194	5032	5129	6830	6830					0.05653130842438259
HALLFREVW	9	Unmodified						0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.824558	1169.63456	1.0856	0.00063595	-7.9186	-0.0046389	-6.833	-0.004003	585.8200268087202	28.29	0.12061	28.281	28.233	28.354	-0.0089779	1212	67	0.8910048	0.040447116	0.88948536	361.08646		16.39151	0.019289	0.000267	0.00015998	NaN	11.17	216	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28844	+		8672	9194	5032	5129							0.05653130842438259
HANEVYVLAA	10	Unmodified	_HANEVYVLAA_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7825558699	2	543.782556	1085.55056	1.7299	0.00094068	-1.2618	-0.00068615	0.46808	0.00025454	543.781920093794	19.876	0.16846	19.861	19.813	19.982	-0.014141	1251	73	0.8670771	0.04420048	0.8655577	351.7066	0	17.928741						434	8	5	NaN	NaN	NaN	0.36718	1	11890	11890		24.961	1.6266	1	135130	+		8673	10721	5033	5130	6831	6831					0.011205549548776617
HANRRFSRG	9	Unmodified	_HANRRFSRG_					0	0	0			REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.79465492545	2	550.794655	1099.57476	1.3237	0.00072908	-8.962	-0.0049362	-7.6383	-0.0042071	550.7896581169593	21.44	0.14471	21.44	21.416	21.561	0	1227	67	0.88180584	0.040490866	0.88180584	357.62378	0	16.421417						260	7	4	NaN	NaN	NaN	0.51576	1	12831	12831		8.962	1.3717	1	39488	+		8674	9477	5034	5131	6832	6832					0.02895252951770999
HANRRFSRG	9	Unmodified						0	0	0			REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.794655	1099.57476	1.3237	0.00072908	-8.962	-0.0049362	-7.6383	-0.0042071	550.7896581169593	21.44	0.14471	21.44	21.416	21.561	0	1227	67	0.88180584	0.040490866	0.88180584	357.62378		16.421417	-0.0050724	-0.00039758	-0.00016038	NaN	8.962	260	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39488	+		8675	9477	5034	5131							0.02895252951770999
HANRRFSRG	9	Unmodified						0	0	0			REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.794655	1099.57476	1.45	0.00079864	-8.0286	-0.0044221	-6.5787	-0.0036235	550.7899528735894	21.464	0.12048	21.45	21.402	21.523	-0.014006	1224	73	0.883646	0.044176638	0.88212657	358.3701		17.916199	0.0050724	0.00063059	0.00016038	NaN	8.962	232	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38113	+		8676	9477	5034	5131							0.02895252951770999
HAPAAAPV	8	Unmodified	_HAPAAAPV_					0	0	0			REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.20321312665	2	367.203213	732.391873	1.2343	0.00045325	-4.7392	-0.0017402	-3.5049	-0.001287	367.20181152069637	30.584	0.1448	30.584	30.535	30.68	0	1467	46	0.7339432	0.027846098	0.7339432	299.4965	0	11.363007						158	7	3	NaN	NaN	NaN	0.84651	1	3794	3794		1.6704	0	1	16176	+		8677	10258	5035	5132	6833	6833					0.014973058372788728
HAPALVGI	8	Unmodified	_HAPALVGI_					0	0	0			REV__ENSG00000203727|ENST00000367474|SAMD5	REV__ENSG00000203727|ENST00000367474|SAMD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.4617500435	1	777.46175	776.454474	1.0031	0.00077988	-6.7685	-0.0052622	-5.7654	-0.0044824	777.4565813092371	35.336	0.19291	35.336	35.287	35.48	-4.5776E-05	576	55	1.2765218	0.032361984	1.2750024	260.18677	0	6.596161						188	9	2	NaN	NaN	NaN	0.84876	1	4373	4373		0.39566	0	1	25635	+		8678	11214	5036	5133	6834	6834					0.05730451905469636
HAPGGSLF	8	Unmodified	_HAPGGSLF_					0	0	0		ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	ENST00000541704.2_1_12:109549217-109563236:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3940644088	1	785.394064	784.386788	1.1554	0.00090742	-4.578	-0.0035955	-3.4226	-0.0026881	785.3900458952548	34.01	0.096561	34.01	33.986	34.083	0	489	55	1.3285799	0.03226888	1.3285799	270.74994	0	6.57605						103	5	2	NaN	NaN	NaN	0.84207	1	4557	4557		3.5732	0	1	7585			8679	7499	5037	5134	6835	6835					-0.014029980253440044
HAPSGAVA	8	Unmodified	_HAPSGAVA_					0	0	0			REV__ENST00000463352.5_1_2:239342272-239344485:+|nuORF	REV__ENST00000463352.5_1_2:239342272-239344485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3627642804	1	709.362764	708.355488	1.2694	0.00090044	-7.9097	-0.0056109	-6.6404	-0.0047104	709.3570539491213	23.899	0.19294	23.886	23.837	24.03	-0.01305	708	58	1.1972283	0.034322858	1.1957089	244.43185	0	7.0075073						251	9	3	NaN	NaN	NaN	0.84207	1	3325	3325		3.5732	0	1	27870	+		8680	12278	5038	5135	6836	6836					-0.010355710594353695
HASDVLENAF	10	Unmodified	_HASDVLENAF_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7618204278	2	551.76182	1101.50909	1.4605	0.00080583	-1.5268	-0.00084241	-0.066305	-3.6585E-05	551.7604613262235	22.067	0.19298	22.067	22.019	22.212	0	1266	79	0.85786515	0.04790461	0.85786515	347.90686	0	19.427673						211	9	4	NaN	NaN	NaN	0.040041	1	12896	12896		55.413	29.298	1	27833			8681	1912	5039	5136	6837	6837					-0.03760625804443407
HASDVLENAF	10	Unmodified	_HASDVLENAF_					0	0	0		ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7618204278	2	551.76182	1101.50909	1.1412	0.00062967	-0.20865	-0.00011513	0.93254	0.00051454	551.7615339416492	22.066	0.19268	22.053	21.956	22.149	-0.013731	1266	97	0.85786515	0.05894679	0.8563457	347.90686	0	23.905823						224	9	3	NaN	NaN	NaN	0.19179	1	12561	12561		36.235	23.232	1	27493			8682	1912	5039	5136	6838	6838					-0.03760625804443407
HASFELWQL	9	Unmodified	_HASFELWQL_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7850985588501	2	565.785099	1129.55564	1.6904	0.0009564	1.1659	0.00065963	2.8563	0.001616	565.785612825375	28.918	0.072384	28.918	28.87	28.943	0	1236	34	0.876284	0.020253062	0.876284	355.26755	0	8.211121						68	4	2	NaN	NaN	NaN	0.35794	1	14066	14066		15.463	0	1	18634			8683	679	5040	5137	6839	6839					-0.0039514118248007435
HASFELWQL	9	Unmodified						0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.785099	1129.55564	1.023	0.00057882	-4.0001	-0.0022632	-2.977	-0.0016844	565.782212855821	28.966	0.16893	28.958	28.886	29.055	-0.0077229	1233	40	0.87812483	0.02393806	0.8766054	356.0139		9.705109	0.0199	-0.0028629	0.00016068	NaN	15.463	123	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29517			8684	679	5040	5137							-0.0039514118248007435
HASIVEVLL	9	Unmodified	_HASIVEVLL_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.79239227470003	2	490.792392	979.570232	1.6738	0.0008215	-1.8433	-0.00090466	-0.16943	-8.3154E-05	490.79144342330596	27.543	0.24133	27.543	27.519	27.76	0	1299	136	0.8375814	0.083006084	0.8375814	340.20273	0	33.714813						357	11	4	NaN	NaN	NaN	0.03623	1	7881	7881		52.758	26.027	1	63750			8685	1460	5041	5138	6840	6840					0.07962930965663872
HASIVEVLL	9	Unmodified	_HASIVEVLL_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5775080828001	1	980.577508	979.570232	1.6716	0.0016391	-0.069065	-6.7723E-05	1.6025	0.0015714	980.5775330417613	27.543	0.072437	27.543	27.519	27.591	0	207	52	1.496219	0.030168176	1.496219	303.866	0	6.126831						117	4	3	NaN	NaN	NaN	0.23112	1	7882	7882		23.334	8.159	1	11792			8686	1460	5041	5138	6841	6841					0.07962930965663872
HASIVEVLL	9	Unmodified	_HASIVEVLL_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.79239227470003	2	490.792392	979.570232	0.78812	0.00038681	-1.0434	-0.00051207	-0.25523	-0.00012527	490.79195151253134	27.615	0.21718	27.605	27.533	27.75	-0.009552	1299	145	0.8375814	0.08851588	0.83606195	340.20273	0	35.95276						444	10	4	NaN	NaN	NaN	0.03623	1	7714	7714		52.758	20.305	1	68724			8687	1460	5041	5138	6842	6842					0.07962930965663872
HASIVEVLL	9	Unmodified						0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	980.577508	979.570232	1.5295	0.0014998	-0.068757	-6.7421E-05	1.4608	0.0014324	980.5779097988333	27.615	0.12064	27.605	27.557	27.677	-0.009552	204	55	1.4979934	0.031941056	1.496474	304.22635		6.4868774	0.031031	2.0452E-07	0.00012748	NaN	23.334	120	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10125			8688	1460	5041	5138							0.07962930965663872
HASLSEYVL	9	Unmodified	_HASLSEYVL_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.7638318005	2	509.763832	1017.51311	2.0496	0.0010448	-3.5211	-0.0017949	-1.4715	-0.0007501	509.7620344545015	22.525	0.19289	22.525	22.477	22.67	0	1296	61	0.8394264	0.03689754	0.8394264	340.77603	0	14.979004						256	9	3	NaN	NaN	NaN	0.078597	1	9267	9267		38.918	21.119	1	73944			8689	3613	5042	5139	6843	6843					0.0050546368928507945
HASLSEYVL	9	Unmodified	_HASLSEYVL_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5203871344	1	1018.52039	1017.51311	2.4954	0.0025416	0.5098	0.00051924	3.0052	0.0030608	1018.5209913871257	22.525	0.072308	22.525	22.501	22.573	0	156	46	1.5263584	0.026570916	1.5263584	309.82657	0	5.393463						91	4	2	NaN	NaN	NaN	0.39244	1	9272	9272		14.042	4.2956	1	7223.9			8690	3613	5042	5139	6844	6844					0.0050546368928507945
HASLSEYVL	9	Unmodified	_HASLSEYVL_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.7638318005	2	509.763832	1017.51311	1.1905	0.00060689	-2.6456	-0.0013486	-1.4551	-0.00074175	509.76229255187076	22.573	0.28941	22.559	22.438	22.728	-0.01354	1296	73	0.8394264	0.044277012	0.83790696	340.77603	0	17.974823						329	13	3	NaN	NaN	NaN	0.056143	1	9088	9088		44.302	23.747	1	76102			8691	3613	5042	5139	6845	6845					0.0050546368928507945
HASLSEYVL	9	Unmodified						0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1018.52039	1017.51311	1.9459	0.0019819	-1.1876	-0.0012096	0.75824	0.00077229	1018.5191026567534	22.548	0.12059	22.535	22.511	22.631	-0.01354	156	46	1.5263584	0.026568055	1.5248389	309.82657		5.392914	0.0049852	-0.00076194	-0.00075972	NaN	14.042	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6986.6			8692	3613	5042	5139							0.0050546368928507945
HATAAAAG	8	Unmodified	_HATAAAAG_					0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.331464152	1	669.331464	668.324188	-0.29108	-0.00019483	0.72915	0.00048804	0.43807	0.00029321	669.3334929675606	53.312	0.2398	53.312	53.216	53.456	-0.00053406	630	118	1.2441287	0.07028651	1.2426093	254.2956	0	14.366333						526	11	3	NaN	NaN	NaN	0.8439	1	2462	2462		3.1533	1.7138	1	84608	+		8693	11786	5043	5140	6846	6846					-0.023241440935294122
HATAAAAG	8	Unmodified						0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.331464	668.324188	1.8409	0.0012322	-2.5751	-0.0017236	-0.73412	-0.00049137	669.3314220489574	53.314	0.23997	53.314	53.242	53.482	0	633	160	1.2423272	0.095568776	1.2423272	253.92741		19.533936	0.0011311	-0.00096539	-0.000141	NaN	3.1533	715	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123290	+		8694	11786	5043	5140							-0.023241440935294122
HATAAAAG	8	Unmodified						0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	-0.29108	-0.00019483	0.72915	0.00048804	0.43807	0.00029321	669.3334929675606	53.312	0.2398	53.312	53.216	53.456	-0.00053406	630	118	1.2441287	0.07028651	1.2426093	254.2956		14.366333	-0.0011311	0.0012462	0.000141	NaN	3.1533	526	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84608	+		8695	11786	5043	5140							-0.023241440935294122
HATESEHSL	9	Unmodified	_HATESEHSL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7305202994	2	505.73052	1009.44649	2.6737	0.0013522	-1.6093	-0.00081386	1.0644	0.00053831	505.7300305983657	11.068	0.19171	11.068	10.9	11.092	0	1308	40	0.83204526	0.023992479	0.83204526	337.81558	0	9.741089						208	9	3	NaN	NaN	NaN	0.012495	1	8943	8943		85.344	57.556	1	33916			8696	3154	5044	5141	6847	6847					-0.05785771872615442
HATESEHSL	9	Unmodified	_HATESEHSL_					0	0	0		ENSG00000138386|ENST00000337386|NAB1;nc|ENSG00000138386|Q13506-2|NAB1	ENSG00000138386|ENST00000337386|NAB1	ENSG00000138386|ENST00000337386|NAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7305202994	2	505.73052	1009.44649	1.3146	0.00066485	-1.78	-0.00090023	-0.46541	-0.00023537	505.72964716861964	11.07	0.35947	11.063	10.871	11.231	-0.0071888	1308	40	0.83204526	0.023992479	0.8305259	337.81558	0	9.741089						345	16	3	NaN	NaN	NaN	0.042816	1	8771	8771		49.961	26.627	1	56316			8697	3154	5044	5141	6848	6848					-0.05785771872615442
HATFNDPVM	9	Unmodified	_HATFNDPVM_					0	0	0		nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2343842568	2	516.234384	1030.45422	1.8606	0.0009605	-1.6677	-0.00086092	0.19291	9.9585E-05	516.2342799034844	19.324	0.11999	19.324	19.252	19.372	0	1332	40	0.8172735	0.02401328	0.8172735	331.72714	0	9.746857						124	6	3	NaN	NaN	NaN	0.089764	1	9783	9783		37.302	11.187	1	12932			8698	1931	5045	5142	6849	6849					-0.05979335876713776
HATFNDPVM	9	Unmodified	_HATFNDPVM_					0	0	0		nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2343842568	2	516.234384	1030.45422	1.4094	0.00072759	-3.2136	-0.0016589	-1.8041	-0.00093136	516.2329152249849	19.346	0.14417	19.332	19.284	19.428	-0.014141	1335	46	0.8154261	0.027704597	0.81390667	330.97733	0	11.245178						125	7	3	NaN	NaN	NaN	0.13602	1	9584	9584		30.61	15.147	1	14134			8699	1931	5045	5142	6850	6850					-0.05979335876713776
HATFNDPVM	9	Oxidation (M)	_HATFNDPVM(Oxidation (M))_		HATFNDPVM(1)		HATFNDPVM(58)	0	0	1		nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.23184156785	2	524.231842	1046.44913	1.553	0.00081412	-1.4093	-0.0007388	0.14368	7.5319E-05	524.231025021533	16.494	0.14382	16.494	16.446	16.59	0	1326	40	0.8209676	0.024008036	0.8209676	333.15942	0	9.742767						179	7	4	NaN	NaN	NaN	0.030669	1	10470	10470		58.235	25.783	1	24518			8700	1931	5045	5143	6851	6851		217			-0.07223639739322607
HATFNDPVM	9	Oxidation (M)	_HATFNDPVM(Oxidation (M))_		HATFNDPVM(1)		HATFNDPVM(58)	0	0	1		nc|ENSG00000113761|Q9UL40-3|ZNF346;ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.23184156785	2	524.231842	1046.44913	1.71	0.00089644	-0.58074	-0.00030444	1.1293	0.000592	524.2314120851222	16.515	0.21576	16.502	16.43	16.645	-0.012993	1326	37	0.8209676	0.022162437	0.81944823	333.15942	0	8.993805						222	10	3	NaN	NaN	NaN	0.030669	1	10258	10258		58.235	25.783	1	28124			8701	1931	5045	5143	6852	6852		217			-0.07223639739322607
HATFRNFGM	9	Unmodified	_HATFRNFGM_					0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5043599147	1	1080.50436	1079.49708	1.1539	0.0012468	-1.1746	-0.0012691	-0.02069	-2.2356E-05	1080.5021689891848	36.326	0.12049	36.326	36.278	36.398	0	114	61	1.5511382	0.03538108	1.5511382	314.61465	0	7.1762695						104	6	2	NaN	NaN	NaN	0.59509	1	11946	11946		5.6942	0.50528	1	6918.5			8702	342	5046	5144	6853	6853					-0.0394852102861023
HATGDYLL	8	Unmodified	_HATGDYLL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.22434249925	2	445.224342	888.434132	1.6084	0.00071609	-1.9772	-0.00088028	-0.36877	-0.00016419	445.2232454391858	19.756	0.24031	19.756	19.708	19.948	0	1383	82	0.7858409	0.049981892	0.7858409	319.64005	0	20.330078						513	11	4	NaN	NaN	NaN	0.15767	1	5917	5917		53.324	17.287	1	155840			8703	1753	5047	5145	6854	6854					-0.014547635450071539
HATGDYLL	8	Unmodified	_HATGDYLL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.22434249925	2	445.224342	888.434132	1.4696	0.00065428	-1.7956	-0.00079943	-0.326	-0.00014514	445.22356444047495	19.779	0.24069	19.765	19.717	19.958	-0.014141	1383	106	0.7858409	0.064819455	0.7843215	319.64005	0	26.365234						485	11	3	NaN	NaN	NaN	0.40747	1	5794	5794		36.036	12.186	1	157520			8704	1753	5047	5145	6855	6855					-0.014547635450071539
HATGDYLL	8	Unmodified	_HATGDYLL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.4414085319	1	889.441409	888.434132	1.6893	0.0015025	-0.12162	-0.00010817	1.5677	0.0013944	889.4411271652573	19.779	0.21656	19.765	19.717	19.934	-0.014141	369	88	1.4001206	0.051775932	1.3986012	284.75378	0	10.53009						334	10	2	NaN	NaN	NaN	0.14214	1	5795	5795		55.947	25.156	1	77354			8705	1753	5047	5145	6856	6856					-0.014547635450071539
HATSLPVTI	9	Unmodified	_HATSLPVTI_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.76891717840005	2	469.768917	937.523281	0.48832	0.0002294	-0.48158	-0.00022623	0.0067402	3.1663E-06	469.76849014786615	19.01	0.096073	18.996	18.948	19.044	-0.014059	1338	67	0.81357855	0.040622413	0.8120591	330.6585	0	16.50998						167	5	3	NaN	NaN	NaN	0.12945	1	6634	6634		31.561	2.6655	1	27063			8706	3505	5048	5146	6857	6857					0.052020714145328384
HATSVLWD	8	Unmodified	_HATSVLWD_					0	0	0			REV__TMPRSS15|p.A823T|1|0.24|ENSG00000154646|chr21:18294289-18294289|C/T|missense_variant	REV__TMPRSS15|p.A823T|1|0.24|ENSG00000154646|chr21:18294289-18294289|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4523075692001	1	928.452308	927.445031	1.0543	0.0009789	2.651	0.0024613	3.7054	0.0034402	928.4545625113864	22.621	0.2652	22.607	22.559	22.824	-0.01354	1224	124	0.883646	0.07546437	0.88212657	179.59886	0	15.337952						517	12	3	NaN	NaN	NaN	0.84727	1	6407	6407		1.2418	0	1	52882	+		8707	13377	5049	5147	6858	6858					-0.02159361170708962
HATVATENEVF	11	Unmodified	_HATVATENEVF_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.29348469695	2	609.293485	1216.57242	2.2493	0.0013705	-1.5501	-0.00094446	0.69925	0.00042605	609.2927191784497	18.532	0.23987	18.532	18.484	18.724	0	1194	76	0.902037	0.045960188	0.902037	365.39288	0	18.61734						428	11	3	NaN	NaN	NaN	0.0071373	1	16900	16900		72.076	46.275	1	278310			8708	4242	5050	5148	6859	6859					-0.02720685087183483
HATVATENEVF	11	Unmodified	_HATVATENEVF_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.29348469695	2	609.293485	1216.57242	1.8291	0.0011145	-0.66512	-0.00040525	1.164	0.00070923	609.2931433232882	18.578	0.2159	18.564	18.516	18.732	-0.01395	1194	70	0.902037	0.042283356	0.9005176	365.39288	0	17.12793						412	10	3	NaN	NaN	NaN	0.00023361	1	16227	16227		80.901	40.747	1	282270			8709	4242	5050	5148	6860	6860					-0.02720685087183483
HAVDGDSKL	9	Unmodified	_HAVDGDSKL_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.23798119074996	2	471.237981	940.461409	1.5269	0.00071951	-3.2786	-0.001545	-1.7517	-0.00082549	471.23645346927384	11.836	0.072062	11.836	11.812	11.884	0	1326	28	0.8209676	0.016622722	0.8209676	333.64658	0	6.7555847						68	4	3	NaN	NaN	NaN	0.66822	1	6827	6827		1.9246	0.48507	1	4526.6			8710	44	5051	5149	6861	6861					-0.01120280004624874
HAVDGDSKL	9	Unmodified	_HAVDGDSKL_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.23798119074996	2	471.237981	940.461409	0.31622	0.00014902	-0.012173	-5.7364E-06	0.30405	0.00014328	471.2384748192988	11.862	0.16815	11.854	11.758	11.926	-0.0081863	1323	34	0.8228144	0.020314455	0.82129496	334.3971	0	8.255951						101	8	2	NaN	NaN	NaN	0.1507	1	6689	6689		28.495	16.236	1	7636.2			8711	44	5051	5149	6862	6862					-0.01120280004624874
HAVDGNTVELK	11	Unmodified	_HAVDGNTVELK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8093019366501	2	591.809302	1181.60405	2.1946	0.0012988	0.28497	0.00016865	2.4796	0.0014674	591.8099563066023	13.733	0.072137	13.733	13.685	13.757	0	1176	34	0.9130621	0.020204961	0.9130621	369.98163	0	8.187256						51	4	2	NaN	NaN	NaN	0.22707	1	15885	15885		28.236	19.991	1	4403.3			8712	5088	5052	5150	6863	6863					0.02051307666761204
HAVEETSHQAL	11	Unmodified	_HAVEETSHQAL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.2965587021502	2	611.296559	1220.57856	0.73819	0.00045125	-1.2392	-0.00075754	-0.50105	-0.00030629	611.2960579586573	12.436	0.11994	12.436	12.388	12.508	0	1185	49	0.90755045	0.029406548	0.90755045	367.6127	0	11.911438						152	6	3	NaN	NaN	NaN	0.051747	1	16994	16994		49.394	33.572	1	21417			8713	4619	5053	5151	6864	6864					-0.022901668556414734
HAVEETSHQAL	11	Unmodified	_HAVEETSHQAL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.2965587021502	2	611.296559	1220.57856	0.64351	0.00039337	-0.50995	-0.00031173	0.13356	8.1644E-05	611.2958416181365	12.462	0.14413	12.453	12.405	12.549	-0.0088415	1182	37	0.9093879	0.022047758	0.90786844	368.35696	0	8.930664						157	7	3	NaN	NaN	NaN	2.3748E-09	1	16309	16309		103.78	80.698	1	19153			8714	4619	5053	5151	6865	6865					-0.022901668556414734
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENST00000483765.5_1_13:27827977-27830662:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.7849015936	2	468.784902	935.55525	1.3261	0.00062165	-1.3922	-0.00065263	-0.066098	-3.0986E-05	468.7847528629835	13.325	0.12013	13.325	13.3	13.421	0	1344	31	0.8098828	0.018478692	0.8098828	329.16647	0	7.5104675						85	6	2	NaN	NaN	NaN	0.062836	1	6743	6743		41.46	27.723	1	6676.4			8715	2312	5054	5152	6866	6866					0.08489483888320137
HAVIQEYML	9	Unmodified	_HAVIQEYML_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2813344494	2	552.281334	1102.54812	1.8219	0.0010062	-2.016	-0.0011134	-0.19413	-0.00010721	552.2805312612536	23.465	0.16869	23.465	23.441	23.61	0	1242	73	0.87260187	0.044190943	0.87260187	353.87918	0	17.921387						452	8	5	NaN	NaN	NaN	0.01966	1	12941	12941		72.428	35.126	1	164400			8716	713	5055	5153	6867	6867					0.0009438322556434287
HAVIQEYML	9	Unmodified	_HAVIQEYML_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5553924321998	1	1103.55539	1102.54812	1.9549	0.0021573	1.0465	0.0011549	3.0013	0.0033122	1103.5553187557268	23.489	0.048239	23.489	23.465	23.513	0	90	46	1.5652816	0.026503444	1.5652816	317.39954	0	5.374237						74	3	3	NaN	NaN	NaN	0.25448	1	12943	12943		21.835	12.089	1	5375			8717	713	5055	5153	6868	6868					0.0009438322556434287
HAVIQEYML	9	Unmodified	_HAVIQEYML_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2813344494	2	552.281334	1102.54812	2.0751	0.001146	-2.0448	-0.0011293	0.030257	1.671E-05	552.2806335369387	23.513	0.19301	23.5	23.427	23.62	-0.013294	1242	70	0.87260187	0.042342782	0.8710824	353.87918	0	17.171906						480	9	6	NaN	NaN	NaN	0.055351	1	12606	12606		44.638	5.1797	1	169250			8718	713	5055	5153	6869	6869					0.0009438322556434287
HAVIQEYML	9	Unmodified	_HAVIQEYML_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5553924321998	1	1103.55539	1102.54812	2.3919	0.0026396	0.64482	0.00071159	3.0367	0.0033512	1103.5576449499713	23.513	0.072369	23.5	23.476	23.548	-0.013294	90	46	1.5652816	0.026506305	1.5637622	317.39954	0	5.3747864						72	4	2	NaN	NaN	NaN	0.2961	1	12607	12607		19.164	7.6151	1	5663			8719	713	5055	5153	6870	6870					0.0009438322556434287
HAVPDELVL	9	Unmodified	_HAVPDELVL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.77419952155	2	496.7742	991.533846	1.9758	0.00098151	-4.0051	-0.0019896	-2.0294	-0.0010081	496.77213352179024	23.345	0.16889	23.345	23.32	23.489	0	1323	58	0.8228144	0.03508115	0.8228144	334.14896	0	14.246613						202	8	4	NaN	NaN	NaN	0.11467	1	8280	8280		33.698	2.9072	1	29431			8720	3955	5056	5154	6871	6871					0.037740540689469526
HAVPDELVL	9	Unmodified	_HAVPDELVL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.77419952155	2	496.7742	991.533846	1.4767	0.00073358	-2.5978	-0.0012905	-1.1211	-0.00055696	496.7727212057718	23.392	0.21717	23.379	23.331	23.548	-0.013296	1320	52	0.824661	0.031388342	0.8231416	334.89883	0	12.746979						189	10	3	NaN	NaN	NaN	0.062836	1	8115	8115		41.46	7.7618	1	28405			8721	3955	5056	5154	6872	6872					0.037740540689469526
HAVPDELVL	9	Unmodified						0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.7742	991.533846	1.5958	0.00079273	-4.1472	-0.0020602	-2.5514	-0.0012675	496.77271637096925	23.127	0.09647	23.114	23.09	23.186	-0.013296	1284	46	0.8468043	0.027659655	0.8452849	343.89136		11.232727	-0.11549	-0.000119	0.011235	NaN	33.698	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5934.8			8722	3955	5056	5154							0.037740540689469526
HAVPGGGK	8	Unmodified	_HAVPGGGK_					0	0	0			REV__ENST00000301159.13_1_19:36239486-36239537:+|nuORF	REV__ENST00000301159.13_1_19:36239486-36239537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.7008376132	2	361.700838	721.387122	1.561	0.00056462	3.1873	0.0011528	4.7483	0.0017175	361.7022150561716	22.38	0.096174	22.366	22.318	22.414	-0.013733	1479	43	0.72651637	0.025999546	0.7249969	296.54865	0	10.612488						107	5	2	NaN	NaN	NaN	0.84207	1	3547	3547		3.5732	1.9029	1	11069	+		8723	11654	5057	5155	6873	6873					0.015284216945133267
HAVQTVETM	9	Unmodified	_HAVQTVETM_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.24749163205	2	508.247492	1014.48043	1.5994	0.0008129	-1.9605	-0.0009964	-0.36105	-0.0001835	508.2472102675525	14.957	0.096101	14.957	14.933	15.029	0	1326	40	0.8209676	0.024010658	0.8209676	333.29575	0	9.747833						133	5	3	NaN	NaN	NaN	0.042816	1	9147	9147		49.961	20.363	1	21015			8724	3766	5058	5156	6874	6874					-0.026230667052118406
HAVQTVETM	9	Unmodified	_HAVQTVETM_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.24749163205	2	508.247492	1014.48043	0.92255	0.00046888	-2.557	-0.0012996	-1.6345	-0.00083071	508.24676277639895	14.98	0.19228	14.968	14.92	15.112	-0.011738	1329	52	0.81912065	0.031395137	0.8176012	332.54593	0	12.745789						171	9	4	NaN	NaN	NaN	0.042816	1	8973	8973		49.961	16.536	1	22102			8725	3766	5058	5156	6875	6875					-0.026230667052118406
HAVQTVETM	9	Oxidation (M)	_HAVQTVETM(Oxidation (M))_		HAVQTVETM(1)		HAVQTVETM(72)	0	0	1		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2449489431001	2	516.244949	1030.47534	1.4945	0.00077151	-0.33321	-0.00017202	1.1613	0.00059949	516.2450025640334	12.484	0.192	12.484	12.412	12.604	0	1326	52	0.8209676	0.0313918	0.8209676	333.2265	0	12.74176						273	9	3	NaN	NaN	NaN	0.01966	1	9787	9787		72.428	22.467	1	40992			8726	3766	5058	5157	6876	6876		417			-0.0386737056783204
HAVQTVETM	9	Oxidation (M)	_HAVQTVETM(Oxidation (M))_		HAVQTVETM(1)		HAVQTVETM(55)	0	0	1		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2449489431001	2	516.244949	1030.47534	1.0305	0.00053199	-0.2767	-0.00014284	0.7538	0.00038915	516.2451399806413	12.486	0.28819	12.477	12.357	12.645	-0.0088415	1326	61	0.8209676	0.036925495	0.81944823	333.2265	0	14.987854						364	13	4	NaN	NaN	NaN	0.032826	1	9587	9587		55.413	18.111	1	44632			8727	3766	5058	5157	6877	6877		417			-0.0386737056783204
HAVSDPSIL	9	Unmodified	_HAVSDPSIL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.75072442525	2	469.750724	937.486896	0.52139	0.00024493	-1.0803	-0.00050747	-0.5589	-0.00026254	469.7500608023441	18.962	0.12013	18.948	18.9	19.02	-0.014059	1356	40	0.8024889	0.024036646	0.8009695	326.1516	0	9.769104						122	6	3	NaN	NaN	NaN	0.12945	1	6631	6631		31.561	11.006	1	17008			8728	2844	5059	5158	6878	6878					0.01565194517809232
HAVSLEQHL	9	Unmodified	_HAVSLEQHL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.2748980133	2	517.274898	1032.53524	1.8612	0.00096278	-2.3522	-0.0012167	-0.49098	-0.00025397	517.2731228715603	15.486	0.072075	15.486	15.462	15.534	0	1242	37	0.87260187	0.022095501	0.87260187	354.17523	0	8.968201						75	4	3	NaN	NaN	NaN	0.10363	1	9886	9886		35.296	2.8437	1	5389.4			8729	2552	5060	5159	6879	6879					0.02027688157704688
HAVSLEQHL	9	Unmodified	_HAVSLEQHL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2748980133	2	517.274898	1032.53524	1.8996	0.00098262	-1.9906	-0.0010297	-0.090972	-4.7058E-05	517.2742208902451	15.604	0.11987	15.592	15.544	15.664	-0.012201	1245	37	0.87076044	0.022097886	0.869241	353.42786	0	8.969177						89	6	2	NaN	NaN	NaN	0.60736	1	9680	9680		5.1889	1.2204	1	6767.3			8730	2552	5060	5159	6880	6880					0.02027688157704688
HAVSLEQHL	9	Unmodified						0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.274898	1032.53524	2.5738	0.0013314	-5.7861	-0.002993	-3.2123	-0.0016616	517.2716346583038	15.82	0.047916	15.807	15.783	15.831	-0.012611	1308	28	0.83204526	0.016610146	0.8305259	337.714		6.741791	0.16056	-0.0015781	-0.021038	NaN	35.296	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3342.3			8731	2552	5060	5159							0.02027688157704688
HAVSSPDPLL	10	Unmodified	_HAVSSPDPLL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.27710635125	2	518.277106	1034.53966	1.4571	0.00075516	-0.83818	-0.00043441	0.61888	0.00032075	518.276493452788	20.79	0.09635	20.79	20.742	20.838	0	1293	31	0.84127116	0.018444777	0.84127116	341.4499	0	7.4862366						76	5	3	NaN	NaN	NaN	0.60686	1	9977	9977		14.425	5.5059	1	8593.7			8732	4512	5061	5160	6881	6881					0.023771525806068894
HAVSSPDPLL	10	Unmodified						0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.277106	1034.53966	0.97607	0.00050587	1.0037	0.00052019	1.9798	0.0010261	518.2774772089573	20.815	0.12036	20.801	20.752	20.873	-0.014088	1290	37	0.84311575	0.022136092	0.8415963	342.19855		8.984467	0.0051433	0.00097587	0.00016257	NaN	14.425	113	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11265			8733	4512	5061	5160							0.023771525806068894
HAVSYGTVAL	10	Unmodified	_HAVSYGTVAL_					0	0	0			REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF	REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.27182400810005	2	509.271824	1016.5291	1.0939	0.00055711	-0.27168	-0.00013836	0.82226	0.00041876	509.27197398209046	14.237	0.21556	14.225	14.154	14.369	-0.011218	1263	46	0.85970795	0.027641773	0.8581885	349.01407	0	11.22168						190	10	2	NaN	NaN	NaN	0.26902	1	9059	9059		29.598	2.3021	1	32137	+		8734	12124	5062	5161	6882	6882					0.021491699262014663
HAVTVVNIL	9	Unmodified	_HAVTVVNIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.29255945020003	2	483.292559	964.570566	1.4245	0.00068843	-1.2582	-0.00060808	0.16626	8.0352E-05	483.29197961595463	24.381	0.072386	24.381	24.333	24.406	0	1326	34	0.8209676	0.020314455	0.8209676	333.52646	0	8.252991						65	4	3	NaN	NaN	NaN	0.10956	1	7475	7475		34.439	16.64	1	5284.8			8735	1457	5063	5162	6883	6883					0.08686350685513844
HAVVQEYIL	9	Unmodified	_HAVVQEYIL_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	2.2511	0.0012072	-0.67988	-0.00036462	1.5712	0.00084263	536.2943992106453	22.887	0.14463	22.887	22.863	23.007	0	1254	67	0.8652351	0.040525913	0.8652351	351.02097	0	16.441101						275	7	5	NaN	NaN	NaN	0.16171	1	11593	11593		27.789	1.6739	1	62875			8736	684	5064	5163	6884	6884					0.04358029477339187
HAVVQEYIL	9	Unmodified	_HAVVQEYIL_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2952991044001	2	536.295299	1070.57605	1.2238	0.00065633	-0.32095	-0.00017212	0.90287	0.00048421	536.2946638163006	22.934	0.14468	22.921	22.872	23.017	-0.01354	1257	43	0.86339295	0.025794804	0.8618735	350.2736	0	10.464783						140	7	2	NaN	NaN	NaN	0.094712	1	11297	11297		36.586	10.472	1	44655			8737	684	5064	5163	6885	6885					0.04358029477339187
HAWIYMVLER	10	Unmodified	_HAWIYMVLER_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.8972639452	3	439.897264	1316.66996	1.1937	0.00052512	-4.6839	-0.0020604	-3.4901	-0.0015353	439.89516541205137	15.75	0.11997	15.75	15.702	15.822	0	1398	43	0.77658504	0.025926352	0.77658504	471.45676	0	15.739624						102	6	2	NaN	NaN	NaN	0.70677	1	19061	19061		3.9087	0.32925	1	14977	+		8738	10411	5065	5164	6886	6886					0.02429425307946076
HAYALELLF	9	Unmodified	_HAYALELLF_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7923922747	2	538.792392	1075.57023	0.95107	0.00051243	-2.7156	-0.0014632	-1.7646	-0.00095073	538.7914043922937	31.139	0.14478	31.139	31.091	31.235	0	1278	52	0.85049206	0.031334043	0.85049206	345.01944	0	12.711334						146	7	3	NaN	NaN	NaN	0.3389	1	11801	11801		16.417	8.829	1	16069			8739	2252	5066	5165	6887	6887					0.03546930965649153
HAYALELLF	9	Unmodified	_HAYALELLF_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7923922747	2	538.792392	1075.57023	0.88326	0.00047589	-2.7775	-0.0014965	-1.8942	-0.0010206	538.790590637511	31.21	0.16891	31.205	31.109	31.277	-0.0050716	1278	61	0.85049206	0.036857605	0.8489726	345.01944	0	14.952057						174	8	3	NaN	NaN	NaN	0.098515	1	11492	11492		36.036	18.067	1	16711			8740	2252	5066	5165	6888	6888					0.03546930965649153
HAYDGKDYISL	11	Unmodified	_HAYDGKDYISL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3091347611501	2	641.309135	1280.60372	1.9587	0.0012561	-1.706	-0.001094	0.25272	0.00016207	641.3084799984654	19.516	0.14398	19.516	19.468	19.612	0	1116	67	0.94976085	0.040333807	0.94976085	384.5088	0	16.329071						201	7	4	NaN	NaN	NaN	0.14074	1	18430	18430		52.195	35.337	1	28815			8741	5902	5067	5166	6889	6889					-0.025361120530988046
HAYDGKDYISL	11	Unmodified	_HAYDGKDYISL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3091347611501	2	641.309135	1280.60372	1.9926	0.0012779	-1.4997	-0.0009618	0.49286	0.00031607	641.3082113198877	19.563	0.12039	19.549	19.524	19.645	-0.014141	1119	52	0.9479278	0.031161964	0.94640833	383.76666	0	12.615875						219	6	4	NaN	NaN	NaN	0.34009	1	17611	17611		36.22	5.2947	1	26601			8742	5902	5067	5166	6890	6890					-0.025361120530988046
HCCPGDSC	8	Unmodified	_HCCPGDSC_					0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.2375054662	1	821.237505	820.230229	2.0197	0.0016587	1.0588	0.00086949	3.0785	0.0025282	821.238072732146	56.157	0.14394	56.157	56.061	56.205	0	315	40	1.4322147	0.023158073	1.4322147	291.65012	0	4.7158203						126	7	2	NaN	NaN	NaN	0.84887	1	5015	5015		0.32989	0	1	9516.4	+		8743	12740	5068	5167	6891	6891					-0.1870769057399002
HCCPGDSC	8	Unmodified						0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.237505	820.230229	2.0197	0.0016587	1.0588	0.00086949	3.0785	0.0025282	821.238072732146	56.157	0.14394	56.157	56.061	56.205	0	315	40	1.4322147	0.023158073	1.4322147	291.65012		4.7158203	0.0013197	-0.00015432	-0.00013088	NaN	0.32989	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9516.4	+		8744	12740	5068	5167							-0.1870769057399002
HCCPGDSC	8	Unmodified						0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.237505	820.230229	0.1477	0.0001213	1.602	0.0013156	1.7497	0.0014369	821.238241673883	56.155	0.047989	56.154	56.13	56.178	-0.00056458	312	49	1.433996	0.028497696	1.4324765	292.01282		5.8031616	-0.0013197	0.00029178	0.00013088	NaN	0.32989	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4621.7	+		8745	12740	5068	5167							-0.1870769057399002
HCCVGLEP	8	Unmodified	_HCCVGLEP_					0	0	0		nc|ENSG00000173226|Q15051-3|IQCB1;nc|ENSG00000173226|Q15051-2|IQCB1;ENSG00000173226|ENST00000310864|IQCB1	nc|ENSG00000173226|Q15051-3|IQCB1	nc|ENSG00000173226|Q15051-3|IQCB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.3644205393	1	857.364421	856.357144	0.040355	3.4599E-05	-9.4663	-0.0081161	-9.4259	-0.0080815	857.3563841534636	55.194	0.12025	55.193	55.193	55.314	-0.0006218	453	37	1.3500742	0.021480441	1.3485547	274.73227	0	4.371155						47	6	2	NaN	NaN	NaN	0.84692	1	5343	5343		1.4396	1.0439	1	3811.6			8746	4880	5069	5168	6892	6892					-0.07678021357344278
HCGVCDGI	8	Unmodified	_HCGVCDGI_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3174703467001	1	803.31747	802.310194	1.6787	0.0013485	6.0558	0.0048647	7.7344	0.0062132	803.3238035315247	28.145	0.072393	28.137	28.088	28.161	-0.0089798	558	70	1.2873057	0.041318297	1.2857863	262.23785	0	8.416992						81	4	2	NaN	NaN	NaN	0.84207	1	4676	4676		3.5732	0.41988	1	5343.1	+		8747	8406	5070	5169	6893	6893					-0.0988688090847063
HCITDNSLSL	10	Unmodified	_HCITDNSLSL_					0	0	0		ENSG00000254206|ENST00000698511|NPIPB11	ENSG00000254206|ENST00000698511|NPIPB11	ENSG00000254206|ENST00000698511|NPIPB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5197352074001	1	1102.51974	1101.51246	1.3926	0.0015353	-4.4185	-0.0048715	-3.026	-0.0033362	1103.5160576962157	27.229	0.12064	27.229	27.181	27.302	0	159	103	1.5245869	0.060173273	1.5245869	309.15128	0	12.201752						204	6	3	NaN	NaN	NaN	0.14619	1	12897	12897		40.154	9.5437	1	16357			8748	6117	5071	5170	6894	6894					-0.034236990220506414
HCKSLLGSP	9	Unmodified	_HCKSLLGSP_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4873128670001	1	941.487313	940.480036	1.9443	0.0018305	3.8046	0.003582	5.7488	0.0054125	941.4908172246788	23.103	0.16871	23.09	23.041	23.21	-0.013294	291	112	1.446459	0.06591165	1.4449396	293.9296	0	13.393646						297	8	3	NaN	NaN	NaN	0.45297	1	6691	6691		11.548	1.4969	1	32533	+		8749	13070	5072	5171	6895	6895					0.00741558365587025
HCKSLLGSP	9	Unmodified						0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	941.487313	940.480036	1.9443	0.0018305	3.8046	0.003582	5.7488	0.0054125	941.4908172246788	23.103	0.16871	23.09	23.041	23.21	-0.013294	291	112	1.446459	0.06591165	1.4449396	293.9296		13.393646	-0.0069351	-0.00076403	0.00013022	NaN	11.548	297	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32533	+		8750	13070	5072	5171							0.00741558365587025
HCLCGGGG	8	Unmodified	_HCLCGGGG_					0	0	0			REV__ENST00000329582.8_1_3:136710850-136729034:+|nuORF	REV__ENST00000329582.8_1_3:136710850-136729034:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.2650408457002	1	703.265041	702.257764	1.5819	0.0011125	8.1865	0.0057573	9.7684	0.0068698	703.2709158092855	25.998	0.12066	25.998	25.926	26.046	0	705	55	1.1990347	0.03251815	1.1990347	244.84087	0	6.640152						141	6	2	NaN	NaN	NaN	0.84876	1	3250	3250		0.39566	0	1	16373	+		8751	11743	5073	5172	6896	6896					-0.1052741925141163
HCLCGGGG	8	Unmodified						0	0	0			REV__ENST00000329582.8_1_3:136710850-136729034:+|nuORF	REV__ENST00000329582.8_1_3:136710850-136729034:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	703.265041	702.257764	1.5819	0.0011125	8.1865	0.0057573	9.7684	0.0068698	703.2709158092855	25.998	0.12066	25.998	25.926	26.046	0	705	55	1.1990347	0.03251815	1.1990347	244.84087		6.640152	-0.0063917	-0.00016928	0.0025661	NaN	0.39566	141	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16373	+		8752	11743	5073	5172							-0.1052741925141163
HCPIIIPI	8	Unmodified	_HCPIIIPI_					0	0	0			REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1	REV__tr|U7SYH8|U7SYH8_FUSNUMethylated-DNA--protein-cysteinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00864PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.5277211187002	1	905.527721	904.520445	0.12786	0.00011578	-0.88016	-0.00079701	-0.7523	-0.00068123	905.5268015651724	53.264	0.14396	53.264	53.216	53.36	-0.00053787	258	61	1.4660252	0.035557866	1.4645058	298.07648	0	7.2297363						208	7	3	NaN	NaN	NaN	0.84651	1	6041	6041		1.6704	0.2308	1	17121	+		8753	13555	5074	5173	6897	6897					0.0643652475602039
HCTLAVSV	8	Unmodified	_HCTLAVSV_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.21546322215005	2	415.215463	828.416374	1.1653	0.00048387	7.5971	0.0031544	8.7625	0.0036383	415.21874148347	15.172	0.12007	15.16	15.088	15.208	-0.012202	1455	58	0.7413668	0.035256445	0.73984736	301.8824	0	14.356293						118	6	2	NaN	NaN	NaN	0.82797	1	5004	5004		5.4659	0	1	10683			8754	4764	5075	5174	6898	6898					-0.0046980207149545095
HDAVATIL	8	Unmodified	_HDAVATIL_					0	0	0			REV__chr17:42957190-42961192|217|11.62|0.0|20.15|-|0|None,PTGES3L-AARSD1|1	REV__chr17:42957190-42961192|217|11.62|0.0|20.15|-|0|None,PTGES3L-AARSD1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.2347102203001	2	420.23471	838.454868	2.3589	0.00099128	-1.6209	-0.00068115	0.73797	0.00031012	420.2341722630715	18.029	0.33572	18.029	17.981	18.316	0	1383	61	0.7858409	0.037017584	0.7858409	319.92978	0	15.070526						457	15	4	NaN	NaN	NaN	0.45125	1	5250	5250		33.698	0	1	235990	+		8755	8219	5076	5175	6899	6899					0.029178268346868208
HDEQWHSFAI	10	Unmodified	_HDEQWHSFAI_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.2859940158501	2	635.285994	1268.55744	1.8503	0.0011755	-7.1445	-0.0045388	-5.2941	-0.0033633	635.2810892782132	23.223	0.096527	23.21	23.162	23.258	-0.013294	1152	64	0.92775106	0.038535774	0.9262317	375.63626	0	15.602722						143	5	3	NaN	NaN	NaN	0.70677	1	17385	17385		7.5876	0.72439	1	21604			8756	4787	5077	5176	6900	6900					-0.066101321645192
HDFLGAYKL	9	Unmodified	_HDFLGAYKL_					0	0	0		ENST00000464081.1_2_1:43232977-43241062:+|nuORF;ENSG00000164008|ENST00000372525|C1orf50	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	355.1905533083	3	355.190553	1062.54983	1.7469	0.00062047	-1.4008	-0.00049756	0.34604	0.00012291	355.1902528416006	19.132	0.09597	19.132	19.084	19.18	0	1437	40	0.7524962	0.024107158	0.7524962	457.96353	0	14.671417						109	5	3	NaN	NaN	NaN	0.56671	1	11239	11239		3.9281	0	1	17608			8757	4282	5078	5177	6901	6901					0.021057603058579843
HDFLGAYKL	9	Unmodified	_HDFLGAYKL_					0	0	0		ENST00000464081.1_2_1:43232977-43241062:+|nuORF;ENSG00000164008|ENST00000372525|C1orf50	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	355.1905533083	3	355.190553	1062.54983	1.839	0.0006532	-0.55891	-0.00019852	1.2801	0.00045468	355.1903340112277	19.25	0.12015	19.236	19.188	19.308	-0.014141	1437	40	0.7524962	0.024104536	0.75097674	457.96353	0	14.66983						128	6	3	NaN	NaN	NaN	0.36492	1	10986	10986		9.6116	0.041175	1	15909			8758	4282	5078	5177	6902	6902					0.021057603058579843
HDILHVMWP	9	Unmodified	_HDILHVMWP_					0	0	0			REV__ENSG00000152467|ENST00000282326|ZSCAN1	REV__ENSG00000152467|ENST00000282326|ZSCAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2894938325	2	574.289494	1146.56443	1.5803	0.00090754	0.23094	0.00013263	1.8112	0.0010402	574.2898842188058	16.658	0.095922	16.645	16.621	16.717	-0.013294	1236	64	0.876284	0.038644075	0.8747646	355.204	0	15.66449						134	5	2	NaN	NaN	NaN	0.65818	1	14198	14198		2.7852	0.32367	1	11351	+		8759	10052	5079	5178	6903	6903					-0.002984908176586032
HDILHVMWP	9	Unmodified						0	0	0			REV__ENSG00000152467|ENST00000282326|ZSCAN1	REV__ENSG00000152467|ENST00000282326|ZSCAN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	574.289494	1146.56443	1.8193	0.0010448	1.5997	0.0009187	3.419	0.0019635	574.791950313218	16.686	0.09598	16.686	16.59	16.686	0	1236	40	0.876284	0.023930311	0.876284	355.204		9.700226	0.020215	0.0009256	0.00075972	NaN	2.7852	71	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4978.8	+		8760	10052	5079	5178							-0.002984908176586032
HDILHVMWP	9	Unmodified						0	0	0			REV__ENSG00000152467|ENST00000282326|ZSCAN1	REV__ENSG00000152467|ENST00000282326|ZSCAN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.289494	1146.56443	1.5803	0.00090754	0.23094	0.00013263	1.8112	0.0010402	574.2898842188058	16.658	0.095922	16.645	16.621	16.717	-0.013294	1236	64	0.876284	0.038644075	0.8747646	355.204		15.66449	-0.020215	-0.00064654	-0.00075972	NaN	2.7852	134	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11351	+		8761	10052	5079	5178							-0.002984908176586032
HDKDSDEH	8	Unmodified	_HDKDSDEH_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.69667748204995	2	491.696677	981.378802	2.2111	0.0010872	-2.9213	-0.0014364	-0.71021	-0.00034921	491.69546396284983	22.645	0.048241	22.645	22.621	22.67	0	1350	25	0.80618626	0.014786184	0.80618626	327.4425	0	6.0055847						31	3	2	NaN	NaN	NaN	0.83582	1	7917	7917		4.4131	1.2015	1	1963.6	+		8762	10288	5080	5179	6904	6904					-0.11263221803426404
HDKDSDEH	8	Unmodified						0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	491.696677	981.378802	2.2111	0.0010872	-2.9213	-0.0014364	-0.71021	-0.00034921	491.69546396284983	22.645	0.048241	22.645	22.621	22.67	0	1350	25	0.80618626	0.014786184	0.80618626	327.4425		6.0055847	0.0070743	0.00049073	-0.00016447	NaN	4.4131	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1963.6	+		8763	10288	5080	5179							-0.11263221803426404
HDKDSDEH	8	Unmodified						0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	491.696677	981.378802	1.5881	0.00078087	-3.7609	-0.0018492	-2.1728	-0.0010683	491.69488387284866	22.645	0.048233	22.631	22.607	22.655	-0.01354	1347	37	0.8080346	0.022179246	0.8065152	328.19327		9.008392	-0.0070743	-0.00033488	0.00016447	NaN	4.4131	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3233.8	+		8764	10288	5080	5179							-0.11263221803426404
HDKEGSLKA	9	Unmodified	_HDKEGSLKA_					0	0	0			REV__ENSG00000118557|ENST00000237353|PMFBP1	REV__ENSG00000118557|ENST00000237353|PMFBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5108850806001	1	984.510885	983.503609	1.6976	0.0016713	1.5854	0.0015608	3.283	0.0032321	984.5135705923838	24.212	0.096474	24.199	24.127	24.224	-0.012749	282	79	1.4517976	0.046239972	1.4502782	294.82812	0	9.39032						133	5	2	NaN	NaN	NaN	0.41766	1	7833	7833		13.003	0	1	19303	+		8765	9270	5081	5180	6905	6905					0.01119695403770038
HDPLFSLLYLW	11	Unmodified	_HDPLFSLLYLW_					0	0	0		ENST00000405844.5_1_7:19765203-19769053:-|nuORF	ENST00000405844.5_1_7:19765203-19769053:-|nuORF	ENST00000405844.5_1_7:19765203-19769053:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3715380527002	2	702.371538	1402.72852	1.064	0.00074733	-5.9146	-0.0041543	-4.8506	-0.0034069	702.3673534276048	27.664	0.14479	27.664	27.615	27.76	0	1056	55	0.9863805	0.0329116	0.9863805	398.96298	0	13.311798						164	7	2	NaN	NaN	NaN	0.65577	1	20090	20090		10.36	0.74852	1	17277			8766	6845	5082	5181	6906	6906					0.04326805154119029
HDVLTKTLPP	10	Unmodified	_HDVLTKTLPP_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8216810304001	2	560.821681	1119.62881	1.4076	0.00078943	4.7341	0.002655	6.1417	0.0034444	560.8241712689114	21.175	0.12048	21.175	21.127	21.248	0	1197	40	0.9001988	0.023899257	0.9001988	365.0022	0	9.690399						101	6	2	NaN	NaN	NaN	0.77421	1	13669	13669		1.9246	0.22244	1	10427	+		8767	10643	5083	5182	6907	6907					0.07377987540144204
HDVTAPVKSP	10	Unmodified	_HDVTAPVKSP_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.8574627354667	3	350.857463	1049.55056	2.1709	0.00076168	1.7842	0.00062599	3.9551	0.0013877	350.8583194229815	17.498	0.12008	17.484	17.436	17.556	-0.013569	1470	67	0.7320868	0.04086095	0.73056734	445.61298	0	24.871582						117	6	2	NaN	NaN	NaN	0.77024	1	10402	10402		1.2289	0	1	8833.6			8768	2621	5084	5183	6908	6908					0.027765549549030766
HEAAGIME	8	Unmodified	_HEAAGIME_					0	0	0		ADH4|p.V75M|1|0.16|ENSG00000198099|chr4:99141580-99141580|C/T|missense_variant	ADH4|p.V75M|1|0.16|ENSG00000198099|chr4:99141580-99141580|C/T|missense_variant	ADH4|p.V75M|1|0.16|ENSG00000198099|chr4:99141580-99141580|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.3821790935	1	857.382179	856.374903	1.5951	0.0013676	0.27032	0.00023177	1.8654	0.0015994	857.3825942983373	30.487	0.19307	30.487	30.463	30.656	0	483	58	1.3321642	0.034048796	1.3321642	271.08755	0	6.928772						213	9	3	NaN	NaN	NaN	0.8439	1	5481	5481		3.1533	0.69183	1	22878			8769	16	5085	5184	6909	6909					-0.05902982830843939
HEACVSFASV	10	Unmodified	_HEACVSFASV_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.23966659995	2	525.239667	1048.46478	1.3395	0.00070358	-9.2964	-0.0048828	-7.9569	-0.0041793	525.2355770892639	21.464	0.096478	21.464	21.44	21.537	0	1317	52	0.8265074	0.031395137	0.8265074	335.3992	0	12.740234						158	5	3	NaN	NaN	NaN	0.68669	1	10556	10556		8.962	2.0988	1	14868			8770	4829	5086	5185	6910	6910					-0.05751353222262878
HEACVSFASV	10	Unmodified						0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.239667	1048.46478	1.3551	0.00071177	-10.367	-0.0054449	-9.0114	-0.0047331	525.2339261816579	21.464	0.16871	21.45	21.402	21.571	-0.014006	1320	64	0.824661	0.038773835	0.8231416	334.64993		15.734558	-0.0069912	-0.00046004	-0.0016829	NaN	8.962	179	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15501			8771	4829	5086	5185							-0.05751353222262878
HEDNEETEE	9	Unmodified	_HEDNEETEE_					0	0	0		ENST00000524311.1_1_X:148850572-148853026:+|nuORF;ENSG00000269556|ENST00000600449|TMEM185A	ENST00000524311.1_1_X:148850572-148853026:+|nuORF	ENST00000524311.1_1_X:148850572-148853026:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2072719581	2	566.207272	1130.39999	1.2543	0.00071017	-2.0083	-0.0011371	-0.75405	-0.00042695	566.7084644865811	35.603	0.072353	35.603	35.578	35.651	0	1266	34	0.85786515	0.020272791	0.85786515	347.79697	0	8.219025						75	4	3	NaN	NaN	NaN	0.59509	1	14089	14089		5.6942	1.2811	1	4477.6			8772	6171	5087	5186	6911	6911					-0.15999301285228285
HEDPEVKFNW	10	Unmodified	_HEDPEVKFNW_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8014769045501	2	650.801477	1299.5884	1.5159	0.00098656	-8.5641	-0.0055735	-7.0481	-0.0045869	651.2978146511216	21.248	0.40928	21.248	21.007	21.416	0	1149	73	0.92958635	0.04404801	0.92958635	376.28253	0	17.829956						666	18	5	NaN	NaN	NaN	0.019815	1	18765	18765		63.765	48.589	1	91627			8773	8030	5088	5187	6912	6912					-0.049409788502771335
HEDPEVKFNW	10	Unmodified	_HEDPEVKFNW_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8014769045501	2	650.801477	1299.5884	1.1933	0.00077663	-5.8355	-0.0037977	-4.6421	-0.0030211	651.2991711946921	21.296	0.21647	21.282	21.234	21.45	-0.014006	1146	73	0.93142134	0.044038475	0.9299019	377.0253	0	17.82611						531	10	6	NaN	NaN	NaN	0.080496	1	17938	17938		48.65	22.535	1	92786			8774	8030	5088	5187	6913	6913					-0.049409788502771335
HEGSIRRRWT	10	Unmodified	_HEGSIRRRWT_					0	0	0			REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.34725160195	2	649.347252	1296.67995	1.7207	0.0011174	-4.6452	-0.0030163	-2.9244	-0.001899	649.3439553238899	21.537	0.072325	21.523	21.499	21.571	-0.014004	1137	40	0.9369253	0.023850322	0.93540585	379.26215	0	9.65448						70	4	2	NaN	NaN	NaN	0.74854	1	17880	17880		4.7291	0.80096	1	6751.5	+		8775	12853	5089	5188	6914	6914					0.04347749357543762
HEGSIRRRWT	10	Unmodified						0	0	0			REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	649.347252	1296.67995	1.605	0.0010422	-5.7763	-0.0037508	-4.1713	-0.0027086	649.3429093641174	21.537	0.072399	21.537	21.488	21.561	0	1140	40	0.93509084	0.023850322	0.93509084	378.5196		9.65448	0.0070034	-0.00071572	-0.0001575	NaN	4.7291	88	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7393.1	+		8776	12853	5089	5188							0.04347749357543762
HEGSIRRRWT	10	Unmodified						0	0	0			REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	REV__ENST00000577066.2_1_17:79007091-79008259:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.347252	1296.67995	1.7207	0.0011174	-4.6452	-0.0030163	-2.9244	-0.001899	649.3439553238899	21.537	0.072325	21.523	21.499	21.571	-0.014004	1137	40	0.9369253	0.023850322	0.93540585	379.26215		9.65448	-0.0070034	0.00075328	0.0001575	NaN	4.7291	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6751.5	+		8777	12853	5089	5188							0.04347749357543762
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.28493138335	2	537.284931	1072.55531	2.3969	0.0012878	-2.1045	-0.0011307	0.29244	0.00015713	537.2816970210733	18.412	0.095892	18.412	18.388	18.484	0	1278	55	0.85049206	0.033171892	0.85049206	345.0317	0	13.457336						110	5	3	NaN	NaN	NaN	0.057383	1	11668	11668		43.776	23.327	1	13953			8778	885	5090	5189	6915	6915					0.021934390976412033
HEKNQQYIA	9	Unmodified	_HEKNQQYIA_					0	0	0			REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	REV__PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.52448361296666	3	377.524484	1129.55162	2.3682	0.00089405	3.4534	0.0013037	5.8216	0.0021978	377.5244277116762	18.436	0.071896	18.436	18.412	18.484	0	1506	31	0.70979416	0.018589258	0.70979416	431.64795	0	11.304718						43	4	2	NaN	NaN	NaN	0.51576	1	14065	14065		5.4499	3.211	1	2890.2	+		8779	11137	5091	5190	6916	6916					-0.007972306761985237
HELEQGCMFG	10	Unmodified	_HELEQGCMFG_					0	0	0		ENST00000439943.5_1_20:42853585-42853672:+|nuORF	ENST00000439943.5_1_20:42853585-42853672:+|nuORF	ENST00000439943.5_1_20:42853585-42853672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.73643380675	2	575.736434	1149.45831	1.3743	0.00079123	0.43299	0.00024929	1.8073	0.0010405	575.7366783728341	30.487	0.072418	30.487	30.487	30.56	0	1179	37	0.9112251	0.022045374	0.9112251	369.35638	0	8.935913						84	4	3	NaN	NaN	NaN	0.70677	1	14772	14772		7.5876	0.047225	1	9005.7			8780	7002	5092	5191	6917	6917					-0.11043614445293315
HELFEMTR	8	Unmodified	_HELFEMTR_					0	0	0		ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.75548383965	2	531.755484	1061.49641	0.64741	0.00034426	-0.74447	-0.00039587	-0.097058	-5.1611E-05	531.7545442424691	29.979	0.12068	29.973	29.949	30.07	-0.0064087	1275	49	0.85233563	0.029489279	0.8508162	345.8253	0	11.964935						109	6	3	NaN	NaN	NaN	0.80692	1	10919	10919		8.2903	0.74991	1	11032			8781	7148	5093	5192	6918	6918					-0.031873604683369194
HELFEMTR	8	Unmodified						0	0	0		ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.755484	1061.49641	1.969	0.001047	-1.4278	-0.00075924	0.54119	0.00028778	531.7545892183485	29.98	0.096539	29.98	29.956	30.053	0	1275	40	0.85233563	0.023963928	0.85233563	345.8253		9.7230835	0.003666	-0.00035066	0.00075972	NaN	8.2903	100	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9855.9			8782	7148	5093	5192							-0.031873604683369194
HELIPTESCK	10	Unmodified	_HELIPTESCK_					0	0	0		nc|ENSG00000188659|Q658L1-2|SAXO2;nc|ENSG00000188659|Q658L1|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7869809333	2	578.786981	1155.55941	1.8737	0.0010845	-5.6296	-0.0032583	-3.7559	-0.0021739	579.2851144564718	16.515	0.14377	16.502	16.43	16.574	-0.012993	1227	43	0.88180584	0.025764108	0.8802864	357.40924	0	10.442566						123	7	2	NaN	NaN	NaN	0.76892	1	14503	14503		3.2116	0.42642	1	11438			8783	5560	5094	5193	6919	6919					-0.01214839470935658
HELIPTESCK	10	Unmodified						0	0	0		nc|ENSG00000188659|Q658L1-2|SAXO2;nc|ENSG00000188659|Q658L1|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	578.786981	1155.55941	1.8983	0.0010987	-11.349	-0.0065686	-9.4505	-0.0054699	578.7804204795837	16.518	0.071917	16.518	16.494	16.566	0	1230	46	0.8799654	0.027602911	0.8799654	356.66333		11.187897	0.0080244	-0.0031983	-0.00016048	NaN	3.2116	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6381.3			8784	5560	5094	5193							-0.01214839470935658
HELLDMLLI	9	Unmodified	_HELLDMLLI_					0	0	0		MYH7|p.P295H|1|0.07|ENSG00000092054|chr14:23430912-23430912|G/T|missense_variant	MYH7|p.P295H|1|0.07|ENSG00000092054|chr14:23430912-23430912|G/T|missense_variant	MYH7|p.P295H|1|0.07|ENSG00000092054|chr14:23430912-23430912|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.8071850591501	2	548.807185	1095.59982	1.9964	0.0010956	-2.9609	-0.001625	-0.9645	-0.00052932	548.8058039466318	25.78	0.16895	25.769	25.721	25.89	-0.0116	1209	37	0.892844	0.0220716	0.8913246	362.11664	0	8.951721						174	8	3	NaN	NaN	NaN	0.29681	1	12339	12339		19.118	3.6556	1	26772			8785	7888	5095	5194	6920	6920					0.05584126919507071
HELLEEARR	9	Unmodified	_HELLEEARR_					0	0	0		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-8|PPFIA2;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.80963628765	2	576.809636	1151.60472	1.0065	0.00058059	-4.9822	-0.0028738	-3.9756	-0.0022932	576.8068162525291	30.052	0.048271	30.045	30.045	30.094	-0.0064106	1185	115	0.90755045	0.06982553	0.906031	367.85883	0	28.30249						125	3	2	NaN	NaN	NaN	0.56671	1	14360	14360		6.8632	0.613	1	11530			8786	2717	5096	5195	6921	6921					0.03498147106461147
HENFEAVGRF	10	Unmodified	_HENFEAVGRF_					0	0	0			REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275	REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.2885367048	2	603.288537	1204.56252	0.29714	0.00017926	-6.5184	-0.0039325	-6.2213	-0.0037532	603.2845205770242	33.382	0.16891	33.38	33.308	33.476	-0.0018501	1197	76	0.9001988	0.04597509	0.8986794	364.6891	0	18.625458						268	8	3	NaN	NaN	NaN	0.66626	1	15940	15940		10.36	0.74852	1	23563	+		8787	8526	5097	5196	6922	6922					-0.031578283019371156
HENFEAVGRF	10	Unmodified						0	0	0			REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275	REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	603.288537	1204.56252	0.29714	0.00017926	-6.5184	-0.0039325	-6.2213	-0.0037532	603.2845205770242	33.382	0.16891	33.38	33.308	33.476	-0.0018501	1197	76	0.9001988	0.04597509	0.8986794	364.6891		18.625458	-0.0015975	0.00069908	-0.00075972	NaN	10.36	268	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23563	+		8788	8526	5097	5196							-0.031578283019371156
HERAEVHTEE	10	Unmodified	_HERAEVHTEE_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.78381546765	2	618.783815	1235.55308	0.72045	0.0004458	0.37865	0.0002343	1.0991	0.0006801	618.7838902982454	29.135	0.16895	29.127	29.079	29.248	-0.0077229	1125	52	0.9442611	0.031178772	0.94274163	382.43088	0	12.627594						148	8	4	NaN	NaN	NaN	0.62092	1	16683	16683		13.463	0	1	10854	+		8789	8992	5098	5197	6923	6923					-0.05527641378102999
HERDDDNSEE	10	Unmodified	_HERDDDNSEE_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.8253270727667	3	415.825327	1244.45415	1.296	0.0005389	-7.2578	-0.003018	-5.9618	-0.0024791	416.1562547511853	26.456	0.096512	26.445	26.421	26.517	-0.011137	1497	43	0.71537006	0.026013732	0.7138506	434.555	0	15.802124						96	5	3	NaN	NaN	NaN	0.7344	1	16877	16877		5.6972	0.78746	1	8887.4			8790	1911	5099	5198	6924	6924					-0.1582970913364079
HERRILHR	8	Unmodified	_HERRILHR_					0	0	0		ENST00000426022.6_1_3:130828655-130852133:+|nuORF;ENST00000506695.5_1_3:130748540-130852801:+|nuORF;nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11	ENST00000426022.6_1_3:130828655-130852133:+|nuORF	ENST00000426022.6_1_3:130828655-130852133:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.8880906507334	3	372.888091	1115.64244	2.4701	0.00092107	-2.1834	-0.00081415	0.28674	0.00010692	372.8870452474769	13.541	0.096091	13.541	13.517	13.613	0	1509	25	0.70793515	0.0148714185	0.70793515	430.58206	0	9.0451355						34	5	2	NaN	NaN	NaN	0.80071	1	13513	13513		6.2502	0	1	1682.6			8791	1968	5100	5199	6925	6925					0.08924702882609381
HEVRYQSI	8	Unmodified	_HEVRYQSI_					0	0	0			REV__EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	REV__EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2670729812	2	516.267073	1030.51959	2.03	0.001048	5.872	0.0030315	7.9021	0.0040796	516.2703909945235	17.117	0.21608	17.117	16.997	17.213	0	1323	55	0.8228144	0.03322929	0.8228144	333.97586	0	13.48761						114	10	2	NaN	NaN	NaN	0.78967	1	9798	9798		10.605	0	1	11076	+		8792	10029	5101	5200	6926	6926					0.005554016406676965
HEWTGMWA	8	Unmodified	_HEWTGMWA_					0	0	0			REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.21599453839997	2	509.215995	1016.41744	1.7498	0.00089103	-11.689	-0.0059524	-9.9395	-0.0050614	509.70944038803003	28.677	0.096525	28.677	28.653	28.75	0	1338	37	0.81357855	0.022172093	0.81357855	330.28754	0	9.00119						65	5	2	NaN	NaN	NaN	0.81807	1	9220	9220		6.794	1.6051	1	5837.5	+		8793	11398	5102	5201	6927	6927					-0.09011587702605084
HEWTGMWA	8	Unmodified						0	0	0			REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.215995	1016.41744	1.7498	0.00089103	-11.689	-0.0059524	-9.9395	-0.0050614	509.70944038803003	28.677	0.096525	28.677	28.653	28.75	0	1338	37	0.81357855	0.022172093	0.81357855	330.28754		9.00119	0.0045442	0.00071594	0.0016836	NaN	6.794	65	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5837.5	+		8794	11398	5102	5201							-0.09011587702605084
HEWTGMWA	8	Unmodified						0	0	0			REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	REV__ENST00000573245.1_1_16:4437985-4445331:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.215995	1016.41744	1.301	0.00066247	-13.068	-0.0066545	-11.767	-0.005992	509.7092402356768	28.676	0.072397	28.668	28.644	28.716	-0.0083504	1341	46	0.8117308	0.027713597	0.81021136	329.5374		11.2508545	-0.0045442	-0.00068817	-0.0016836	NaN	6.794	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5195.4	+		8795	11398	5102	5201							-0.09011587702605084
HEWTIPSHM	9	Unmodified	_HEWTIPSHM_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1137.5145902499999	1	1137.51459	1136.50731	1.2973	0.0014757	-1.7858	-0.0020313	-0.4885	-0.00055568	1137.5129843722143	39.668	0.096466	39.673	39.673	39.77	0.0053368	171	58	1.5174994	0.033670902	1.51598	307.5968	0	6.8250732						214	5	4	NaN	NaN	NaN	0.67989	1	13854	13854		0.92586	0	1	21038			8796	965	5103	5202	6928	6928					-0.05547958094052774
HFAETSYYF	9	Unmodified	_HFAETSYYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7534640794499	2	582.753464	1163.49238	2.2118	0.0012889	0.68388	0.00039853	2.8957	0.0016875	582.7534543249379	22.814	0.21701	22.814	22.766	22.983	0	1197	73	0.9001988	0.04413849	0.9001988	364.8348	0	17.88852						294	10	4	NaN	NaN	NaN	0.049695	1	15255	15255		47.04	27.877	1	46663			8797	4451	5104	5203	6929	6929					-0.08283126690412246
HFAETSYYF	9	Unmodified	_HFAETSYYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7534640794499	2	582.753464	1163.49238	1.6403	0.00095587	0.48717	0.0002839	2.1274	0.0012398	582.7533899290027	22.862	0.21693	22.848	22.776	22.993	-0.01354	1197	58	0.9001988	0.034933507	0.8986794	364.83484	0	14.157928						261	10	2	NaN	NaN	NaN	0.032417	1	14730	14730		55.947	36.829	1	50540			8798	4451	5104	5203	6930	6930					-0.08283126690412246
HFDDFVTNL	9	Unmodified	_HFDDFVTNL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.5105507295998	1	1107.51055	1106.50327	2.1977	0.002434	0.88961	0.00098526	3.0874	0.0034193	1107.5119530152624	25.95	0.096512	25.95	25.926	26.022	0	114	49	1.5511382	0.028301835	1.5511382	314.5177	0	5.7386475						96	5	2	NaN	NaN	NaN	0.12328	1	13120	13120		32.453	11.939	1	9166.7			8799	613	5105	5204	6931	6931					-0.045717243161107035
HFDDFVTNL	9	Unmodified	_HFDDFVTNL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2589135981	2	554.258914	1106.50327	1.9226	0.0010656	2.9652	0.0016435	4.8878	0.0027091	554.2614234474648	25.95	0.19308	25.95	25.926	26.119	0	1167	109	0.91857195	0.06615764	0.91857195	372.50568	0	26.828705						453	9	4	NaN	NaN	NaN	0.016254	1	13121	13121		76.739	39.437	1	115630			8800	613	5105	5204	6932	6932					-0.045717243161107035
HFDDFVTNL	9	Unmodified	_HFDDFVTNL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1107.5105507295998	1	1107.51055	1106.50327	2.2259	0.0024652	-0.77783	-0.00086145	1.4481	0.0016038	1107.5101815299186	25.974	0.096544	25.962	25.938	26.034	-0.0116	117	55	1.5493695	0.031829476	1.54785	314.15906	0	6.4539185						114	5	3	NaN	NaN	NaN	0.16171	1	12748	12748		27.789	0	1	8014.8			8801	613	5105	5204	6933	6933					-0.045717243161107035
HFDDFVTNL	9	Unmodified	_HFDDFVTNL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2589135981	2	554.258914	1106.50327	2.2998	0.0012747	3.3824	0.0018747	5.6822	0.0031494	554.2617755241447	25.974	0.16896	25.962	25.914	26.083	-0.0116	1164	136	0.9204082	0.08274627	0.91888875	373.2503	0	33.555817						566	8	4	NaN	NaN	NaN	0.025843	1	12749	12749		64.55	45.386	1	127580			8802	613	5105	5204	6934	6934					-0.045717243161107035
HFDDFVTNLI	10	Unmodified	_HFDDFVTNLI_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8009455883	2	610.800946	1219.58734	2.0129	0.0012295	-5.5494	-0.0033896	-3.5366	-0.0021601	610.7974624011481	18.532	0.23983	18.532	18.46	18.7	0	1173	79	0.91489893	0.047770202	0.91489893	370.59268	0	19.350006						524	11	4	NaN	NaN	NaN	0.2358	1	16969	16969		32.453	3.5572	1	111130			8803	613	5106	5205	6935	6935					-0.013671932191982705
HFDDREENY	9	Unmodified	_HFDDREENY_					0	0	0			REV__IMP3|p.D181H|1|0.25|ENSG00000177971|chr15:75639628-75639628|C/G|missense_variant	REV__IMP3|p.D181H|1|0.25|ENSG00000177971|chr15:75639628-75639628|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.7494413340501	2	612.749441	1223.48433	0.83217	0.00050991	7.9568	0.0048755	8.789	0.0053855	612.7548411692421	21.85	0.14447	21.836	21.788	21.932	-0.013895	1161	61	0.9222442	0.03672248	0.92072475	373.55463	0	14.874451						209	7	3	NaN	NaN	NaN	0.31471	1	16360	16360		17.97	9.6922	1	24067	+		8804	13022	5107	5206	6936	6936					-0.11847305677792974
HFDDTVVCL	9	Unmodified	_HFDDTVVCL_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7420421134	2	524.742042	1047.46953	1.2911	0.00067749	-0.56462	-0.00029628	0.72646	0.0003812	524.7420693742761	24.864	0.16894	24.864	24.816	24.985	0	1293	55	0.84127116	0.033207774	0.84127116	341.39456	0	13.475983						113	8	2	NaN	NaN	NaN	0.29681	1	10512	10512		19.118	5.0767	1	9086.4			8805	3800	5108	5207	6937	6937					-0.052304690795153874
HFDIVIRNL	9	Unmodified	_HFDIVIRNL_					0	0	0		nc|ENSG00000129317|Q9H0K6-2|PUS7L;ENSG00000129317|ENST00000344862|PUS7L	nc|ENSG00000129317|Q9H0K6-2|PUS7L	nc|ENSG00000129317|Q9H0K6-2|PUS7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8220153814001	2	563.822015	1125.62948	2.0062	0.0011311	-1.9716	-0.0011116	0.034537	1.9473E-05	563.8207692283519	23.61	0.14458	23.61	23.562	23.706	0	1203	46	0.8965218	0.02757907	0.8965218	363.48776	0	11.181732						145	7	3	NaN	NaN	NaN	0.042816	1	13924	13924		49.961	25.399	1	23691			8806	2600	5109	5208	6938	6938					0.0716882697984147
HFDLNLRQF	9	Unmodified	_HFDLNLRQF_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3092721469	2	595.309272	1188.60399	1.5794	0.00094025	-2.3689	-0.0014102	-0.78949	-0.00046999	595.30792038632	23.586	0.31323	23.586	23.513	23.827	0	1170	73	0.91673553	0.04408604	0.91673553	371.44492	0	17.862885						224	14	2	NaN	NaN	NaN	0.024221	1	16121	16121		66.656	43.322	1	62888			8807	6028	5110	5209	6939	6939					0.017233524574066905
HFDLNLRQF	9	Unmodified	_HFDLNLRQF_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;WDR46|p.D263*|1|0.29|ENSG00000227057|chr6:33287447-33287448|-/A|frameshift_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3092721469	2	595.309272	1188.60399	1.3944	0.00083012	-3.3917	-0.0020191	-1.9973	-0.001189	595.3067780565058	23.706	0.21684	23.693	23.621	23.837	-0.013048	1167	67	0.91857195	0.040407836	0.9170525	372.189	0	16.372528						244	10	2	NaN	NaN	NaN	0.059222	1	15510	15510		42.995	8.556	1	64984			8808	6028	5110	5209	6940	6940					0.017233524574066905
HFDLSVIEL	9	Unmodified	_HFDLSVIEL_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.7873068968	2	536.787307	1071.56006	2.0642	0.001108	-2.4501	-0.0013152	-0.38594	-0.00020717	536.78617123942	30.318	0.19307	30.318	30.27	30.463	0	1248	73	0.8689189	0.044205308	0.8689189	352.51135	0	17.933624						389	9	3	NaN	NaN	NaN	0.012648	1	11633	11633		84.879	26.643	1	149160			8809	1108	5111	5210	6941	6941					0.027143232404114315
HFDLSVIEL	9	Unmodified	_HFDLSVIEL_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.7873068968	2	536.787307	1071.56006	1.0054	0.00053969	-2.837	-0.0015229	-1.8316	-0.00098317	536.7858504080637	30.317	0.31365	30.311	30.263	30.576	-0.0064087	1245	79	0.87076044	0.047883928	0.869241	353.25845	0	19.425995						503	14	4	NaN	NaN	NaN	0.03623	1	11333	11333		52.758	8.4559	1	149580			8810	1108	5111	5210	6942	6942					0.027143232404114315
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.2363956295	2	498.236396	994.458238	1.669	0.00083156	-1.4337	-0.00071433	0.23529	0.00011723	498.2358759003522	26.94	0.24131	26.94	26.891	27.133	0	1311	109	0.83019954	0.06638688	0.83019954	337.1345	0	26.958923						763	11	5	NaN	NaN	NaN	0.10499	1	8361	8361		63.31	38.349	1	196610			8811	4822;1073	5112	5211	6943	6943					-0.039212463829812805
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4655147924001	1	995.465515	994.458238	1.7074	0.0016997	0.95789	0.00095355	2.6653	0.0026532	995.4666799276713	26.94	0.19307	26.94	26.915	27.109	0	213	85	1.4926696	0.04970193	1.4926696	303.08218	0	10.091827						220	9	2	NaN	NaN	NaN	0.12449	1	8363	8363		59.445	35.595	1	34273			8812	4822;1073	5112	5211	6944	6944					-0.039212463829812805
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.2363956295	2	498.236396	994.458238	1.1562	0.00057606	-2.1166	-0.0010545	-0.96036	-0.00047849	498.2354725938982	26.987	0.21722	26.977	26.929	27.146	-0.010126	1311	112	0.83019954	0.06822729	0.8286801	337.1345	0	27.706299						767	10	4	NaN	NaN	NaN	0.10499	1	8196	8196		63.31	42.358	1	183200			8813	4822;1073	5112	5211	6945	6945					-0.039212463829812805
HFDMAVYL	8	Unmodified	_HFDMAVYL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.4655147924001	1	995.465515	994.458238	1.3578	0.0013517	1.6806	0.001673	3.0384	0.0030247	995.4661611918428	26.987	0.19312	26.977	26.905	27.098	-0.010126	213	82	1.4926696	0.047934413	1.4911501	303.08218	0	9.732941						313	9	3	NaN	NaN	NaN	0.19946	1	8199	8199		50.033	30.748	1	37770			8814	4822;1073	5112	5211	6946	6946					-0.039212463829812805
HFDMAVYL	8	Unmodified						0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.236396	994.458238	0.91227	0.00045453	-3.6569	-0.001822	-2.7446	-0.0013675	498.23452975189036	27.132	0.072397	27.122	27.122	27.194	-0.010126	1308	115	0.83204526	0.07017368	0.8305259	337.88406		28.496704	0.09108	-0.0021311	0.00016317	NaN	63.31	115	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10590			8815	4822;1073	5112	5211							-0.039212463829812805
HFDMAVYL	8	Oxidation (M)	_HFDM(Oxidation (M))AVYL_		HFDM(1)AVYL		HFDM(44)AVYL	0	0	1		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.23385294055004	2	506.233853	1010.45315	1.9796	0.0010022	-3.4579	-0.0017505	-1.4783	-0.00074837	506.2320191583195	22.067	0.072325	22.067	22.019	22.091	0	1323	49	0.8228144	0.029546797	0.8228144	334.06332	0	11.996033						174	4	4	NaN	NaN	NaN	0.27293	1	8988	8988		44.247	24.962	1	74994			8816	4822;1073	5112	5212	6947	6947		116			-0.051655502455901114
HFDMAVYL	8	Oxidation (M)	_HFDM(Oxidation (M))AVYL_		HFDM(1)AVYL		HFDM(41)AVYL	0	0	1		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4604294145001	1	1011.46043	1010.45315	1.889	0.0019107	0.58403	0.00059073	2.473	0.0025014	1011.4608735022168	22.067	0.048246	22.067	22.043	22.091	0	252	49	1.4695803	0.028437257	1.4695803	298.32938	0	5.772827						98	3	3	NaN	NaN	NaN	0.30832	1	8989	8989		41.46	20.905	1	10106			8817	4822;1073	5112	5212	6948	6948		116			-0.051655502455901114
HFDMAVYL	8	Oxidation (M)	_HFDM(Oxidation (M))AVYL_		HFDM(1)AVYL		HFDM(44)AVYL	0	0	1		ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000172037|ENST00000305544|LAMB2;ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.23385294055004	2	506.233853	1010.45315	1.0927	0.00055318	-1.2945	-0.0006553	-0.20174	-0.00010213	506.2332383627887	22.091	0.072296	22.077	22.029	22.101	-0.013731	1323	52	0.8228144	0.031388342	0.82129496	334.06332	0	12.743683						187	4	5	NaN	NaN	NaN	0.27293	1	8812	8812		44.247	24.962	1	66382			8818	4822;1073	5112	5212	6949	6949		116			-0.051655502455901114
HFDPEVVQI	9	Unmodified	_HFDPEVVQI_					0	0	0		nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.27710635125	2	542.277106	1082.53966	1.712	0.00092838	-1.2651	-0.00068604	0.4469	0.00024234	542.2764535435656	23.73	0.096397	23.73	23.706	23.803	0	1296	82	0.8394264	0.049776614	0.8394264	340.50272	0	20.191284						268	5	3	NaN	NaN	NaN	0.27608	1	12094	12094		20.449	10.703	1	35238			8819	3731	5113	5213	6950	6950					0.0016915258061089844
HFDPEVVQI	9	Unmodified	_HFDPEVVQI_					0	0	0		nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.27710635125	2	542.277106	1082.53966	1.6743	0.00090796	-0.23681	-0.00012842	1.4375	0.00077954	542.277115970044	23.754	0.12048	23.741	23.717	23.837	-0.013048	1296	91	0.8394264	0.055298448	0.83790696	340.50272	0	22.431122						207	6	2	NaN	NaN	NaN	0.16171	1	11781	11781		27.789	12.613	1	33574			8820	3731	5113	5213	6951	6951					0.0016915258061089844
HFDYQSLLM	9	Unmodified	_HFDYQSLLM_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.27096672835	2	577.270967	1152.52738	1.5025	0.00086734	-2.3809	-0.0013744	-0.87838	-0.00050707	577.2696081340393	27.398	0.16898	27.398	27.35	27.519	0	1215	79	0.8891654	0.047837377	0.8891654	360.40335	0	19.38977						206	8	2	NaN	NaN	NaN	0.10363	1	14880	14880		35.296	17.327	1	26414			8821	4016	5114	5214	6952	6952					-0.04278207154084157
HFDYQSLLM	9	Unmodified						0	0	0		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.270967	1152.52738	1.0064	0.00058096	-0.93645	-0.00054059	0.069948	4.0379E-05	577.2697932324538	27.422	0.12065	27.411	27.387	27.508	-0.010126	1212	76	0.8910048	0.045984983	0.88948536	361.1489		18.638977	0.0066254	0.00069053	0.00015998	NaN	35.296	154	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25752			8822	4016	5114	5214							-0.04278207154084157
HFDYQSLLM	9	Oxidation (M)	_HFDYQSLLM(Oxidation (M))_		HFDYQSLLM(1)		HFDYQSLLM(42)	0	0	1		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2684240394	2	585.268424	1168.5223	1.8793	0.0010999	2.6845	0.0015712	4.5638	0.002671	585.2690514652703	24.864	0.096518	24.864	24.816	24.912	0	1209	85	0.892844	0.051478148	0.892844	361.8358	0	20.862152						164	5	2	NaN	NaN	NaN	0.060816	1	15429	15429		42.318	18.983	1	48907			8823	4016	5114	5215	6953	6953		433			-0.055225110167157254
HFDYQSLLM	9	Oxidation (M)	_HFDYQSLLM(Oxidation (M))_		HFDYQSLLM(1)		HFDYQSLLM(55)	0	0	1		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2684240394	2	585.268424	1168.5223	1.4172	0.00082943	3.6826	0.0021553	5.0998	0.0029848	585.77421752889	24.864	0.16888	24.851	24.755	24.924	-0.012392	1209	82	0.892844	0.049653053	0.8913246	361.8358	0	20.122528						220	8	2	NaN	NaN	NaN	0.032826	1	14893	14893		55.413	26.517	1	56145			8824	4016	5114	5215	6954	6954		433			-0.055225110167157254
HFGHLGETL	9	Unmodified	_HFGHLGETL_					0	0	0			REV__ENSG00000142168|ENST00000270142|SOD1	REV__ENSG00000142168|ENST00000270142|SOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7563411194	2	505.756341	1009.49813	0.99131	0.00050136	-10.509	-0.0053152	-9.5181	-0.0048139	505.75118035408246	28.145	0.072393	28.137	28.088	28.161	-0.0089798	1299	58	0.8375814	0.03505075	0.83606195	340.06308	0	14.230835						94	4	2	NaN	NaN	NaN	0.45297	1	8781	8781		11.548	0.94349	1	11237	+		8825	9839	5115	5216	6955	6955					-0.006239833880499646
HFGHLGETL	9	Unmodified						0	0	0			REV__ENSG00000142168|ENST00000270142|SOD1	REV__ENSG00000142168|ENST00000270142|SOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.756341	1009.49813	0.99131	0.00050136	-10.509	-0.0053152	-9.5181	-0.0048139	505.75118035408246	28.145	0.072393	28.137	28.088	28.161	-0.0089798	1299	58	0.8375814	0.03505075	0.83606195	340.06308		14.230835	0.0072062	0.00024828	-0.00075972	NaN	11.548	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11237	+		8826	9839	5115	5216							-0.006239833880499646
HFGNPVDTIY	10	Unmodified	_HFGNPVDTIY_					0	0	0			REV__ENSG00000102755|ENST00000282397|FLT1	REV__ENSG00000102755|ENST00000282397|FLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.1891009428334	3	388.189101	1161.54547	1.247	0.00048409	-9.3447	-0.0036275	-8.0977	-0.0031434	388.1855227992228	21.2	0.14452	21.2	21.175	21.32	0	1500	43	0.71351165	0.026016474	0.71351165	433.76483	0	15.816193						200	7	3	NaN	NaN	NaN	0.67523	1	15197	15197		10.965	5.7762	1	35604	+		8827	8889	5116	5217	6956	6956					-0.028837489076977363
HFHYFQRFFYF	11	Unmodified	_HFHYFQRFFYF_					0	0	0		L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|41|3|anti-sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|41|3|anti-sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|41|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.9262110026666	3	546.926211	1637.7568	1.6584	0.00090702	1.8228	0.00099691	3.4812	0.0019039	546.9272432912375	17.021	0.26404	17.021	16.949	17.213	0	1335	58	0.8154261	0.035103858	0.8154261	494.0289	0	21.267822						334	12	4	NaN	NaN	NaN	0.72681	1	20792	20792		5.6972	5.2064	1	35586			8828	7850	5117	5218	6957	6957					-0.036564521459922616
HFIAEHYMF	9	Unmodified	_HFIAEHYMF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7736765928	2	597.773677	1193.5328	1.6518	0.00098742	-0.63925	-0.00038213	1.0126	0.00060529	597.7731456430978	22.212	0.19299	22.212	22.139	22.332	0	1170	76	0.91673553	0.045930386	0.91673553	371.4273	0	18.609283						396	9	5	NaN	NaN	NaN	0.00011853	1	16248	16248		121.78	92.887	1	122910			8829	3448	5118	5219	6958	6958					-0.05622483571619341
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(120)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.77113390385	2	605.771134	1209.52771	1.8542	0.0011232	-1.9836	-0.0012016	-0.12939	-7.8381E-05	605.7697314456817	19.756	0.24027	19.756	19.684	19.924	0	1173	64	0.91489893	0.03857732	0.91489893	370.62714	0	15.627777						557	11	5	NaN	NaN	NaN	0.00011853	1	16711	16711		121.78	103.81	1	209460			8830	3448	5118	5220	6959	6959		386			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(96)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.77113390385	2	605.771134	1209.52771	1.4101	0.00085421	-2.2122	-0.0013401	-0.80208	-0.00048587	605.7698250519111	19.924	0.33694	19.909	19.765	20.102	-0.014141	1173	82	0.91489893	0.049594104	0.9133795	370.62714	0	20.090668						831	15	5	NaN	NaN	NaN	0.0081087	1	16035	16035		96.245	59.659	1	213700			8831	3448	5118	5220	6960	6960		386			-0.06866787434228172
HFIRFDIY	8	Unmodified	_HFIRFDIY_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.86254811336664	3	370.862548	1109.56581	1.3068	0.00048463	1.5827	0.00058697	2.8895	0.0010716	370.863169461267	20.838	0.096451	20.838	20.814	20.911	0	1464	37	0.73579943	0.022273242	0.73579943	447.55954	0	13.548004						96	5	3	NaN	NaN	NaN	0.83849	1	13258	13258		2.4615	0.28518	1	8814.2	+		8832	11259	5119	5221	6961	6961					0.015414665427442742
HFIRFDIY	8	Unmodified						0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	370.862548	1109.56581	1.3068	0.00048463	1.5827	0.00058697	2.8895	0.0010716	370.863169461267	20.838	0.096451	20.838	20.814	20.911	0	1464	37	0.73579943	0.022273242	0.73579943	447.55954		13.548004	-0.065323	2.912E-05	-0.00016828	NaN	2.4615	96	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8814.2	+		8833	11259	5119	5221							0.015414665427442742
HFIRFDIY	8	Unmodified						0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	370.862548	1109.56581	1.3786	0.00051127	1.4767	0.00054765	2.8553	0.0010589	370.86260180694075	20.983	0.14439	20.969	20.921	21.065	-0.014088	1461	34	0.7376554	0.020418286	0.73613596	448.68848		12.419678	0.065323	-8.884E-05	0.00016828	NaN	2.4615	93	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7796.4	+		8834	11259	5119	5221							0.015414665427442742
HFIRPTLSHR	10	Unmodified	_HFIRPTLSHR_					0	0	0			REV__ENST00000585090.1_1_18:3249531-3249615:+|nuORF	REV__ENST00000585090.1_1_18:3249531-3249615:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.9071508267	3	421.907151	1262.69962	1.7278	0.00072896	5.3331	0.0022501	7.0609	0.002979	421.909779420669	18.866	0.072029	18.852	18.78	18.852	-0.014059	1416	46	0.76547134	0.027797818	0.7639519	464.9156	0	16.88324						77	4	2	NaN	NaN	NaN	0.77318	1	17278	17278		0.81135	0	1	5417.3	+		8835	12879	5120	5222	6962	6962					0.0787812536830188
HFNIYSFT	8	Unmodified	_HFNIYSFT_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.4836076975998	1	1028.48361	1027.47633	2.1591	0.0022206	-5.601	-0.0057605	-3.4419	-0.00354	1028.4776888064432	22.621	0.072367	22.621	22.597	22.67	0	258	40	1.4660252	0.023113847	1.4660252	297.54135	0	4.6911316						55	4	2	NaN	NaN	NaN	0.8439	1	9654	9654		3.1533	0	1	3634			8836	3735	5121	5223	6963	6963					-0.0363078813663833
HFNQDLKP	8	Unmodified	_HFNQDLKP_					0	0	0		ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5054057722	1	998.505406	997.498129	1.9115	0.0019086	-2.9068	-0.0029024	-0.99533	-0.00099384	998.5010089254461	24.84	0.048231	24.827	24.803	24.851	-0.012392	267	46	1.4606913	0.026681185	1.4591719	296.57675	0	5.417328						56	3	2	NaN	NaN	NaN	0.84455	1	8298	8298		2.7852	0.32367	1	5235.7			8837	14031	5122	5224	6964	6964					-0.0007198338805665117
HFNQDLKP	8	Unmodified						0	0	0		ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	ZNF735|p.Q98K|1|0.27|ENSG00000223614|chr7:64219343-64219343|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	998.505406	997.498129	1.8821	0.0018793	-6.5821	-0.0065722	-4.6999	-0.0046929	998.5035050447681	24.816	0.024132	24.816	24.791	24.816	0	270	46	1.458913	0.026686788	1.458913	296.21567		5.418457	-0.0057878	-0.0012227	-0.00012946	NaN	2.7852	40	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3923.6			8838	14031	5122	5224							-0.0007198338805665117
HFPEQFQPAPF	11	Unmodified	_HFPEQFQPAPF_					0	0	0		ENST00000169298.7_1_3:186793626-186793869:+|nuORF	ENST00000169298.7_1_3:186793626-186793869:+|nuORF	ENST00000169298.7_1_3:186793626-186793869:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.88390038663334	3	448.8839	1343.62987	0.91512	0.00041078	-0.71626	-0.00032152	0.19886	8.9267E-05	448.8834698550183	21.296	0.072247	21.296	21.272	21.344	0	1419	61	0.76361835	0.037053704	0.76361835	463.4883	0	22.490265						127	4	3	NaN	NaN	NaN	0.688	1	19470	19470		5.6972	2.1027	1	9839.7			8839	6218	5123	5225	6965	6965					-0.028197980909681064
HFPEQFQPAPF	11	Unmodified						0	0	0		ENST00000169298.7_1_3:186793626-186793869:+|nuORF	ENST00000169298.7_1_3:186793626-186793869:+|nuORF	ENST00000169298.7_1_3:186793626-186793869:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	448.8839	1343.62987	1.3043	0.0005855	0.49366	0.0002216	1.798	0.00080709	448.88380262402416	21.464	0.072197	21.45	21.378	21.45	-0.014006	1425	58	0.7599118	0.035206795	0.75839233	461.23856		21.369202	0.077256	0.00099307	-0.002613	NaN	5.6972	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9160.2			8840	6218	5123	5225							-0.028197980909681064
HFPPRRPL	8	Unmodified	_HFPPRRPL_					0	0	0			REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.29851049535006	2	510.29851	1018.58247	1.3491	0.00068844	-1.6465	-0.0008402	-0.2974	-0.00015176	510.2964974557393	23.899	0.09646	23.886	23.861	23.958	-0.01305	1272	67	0.854179	0.040569723	0.8526596	346.76016	0	16.469574						249	5	5	NaN	NaN	NaN	0.69631	1	9140	9140		19.285	3.822	1	37297	+		8841	12107	5124	5226	6966	6966					0.07392012219372646
HFPPRRPL	8	Unmodified						0	0	0			REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.29851	1018.58247	1.8666	0.00095252	-0.21387	-0.00010914	1.6527	0.00084338	510.2975422967998	23.875	0.096441	23.875	23.851	23.947	0	1272	82	0.854179	0.049776614	0.854179	346.76016		20.207184	-0.0054315	0.00079661	0.00075972	NaN	19.285	267	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34511	+		8842	12107	5124	5226							0.07392012219372646
HFPPRRPL	8	Unmodified						0	0	0			REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.29851	1018.58247	1.3491	0.00068844	-1.6465	-0.0008402	-0.2974	-0.00015176	510.2964974557393	23.899	0.09646	23.886	23.861	23.958	-0.01305	1272	67	0.854179	0.040569723	0.8526596	346.76016		16.469574	0.0054315	-0.00066553	-0.00075972	NaN	19.285	249	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37297	+		8843	12107	5124	5226							0.07392012219372646
HFPSLFDEL	9	Unmodified	_HFPSLFDEL_					0	0	0			REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.8501967106	3	368.850197	1103.52876	1.6175	0.00059661	-7.7042	-0.0028417	-6.0867	-0.0022451	368.84737860430954	19.372	0.071966	19.372	19.348	19.42	0	1404	37	0.77288127	0.022227407	0.77288127	470.1466	0	13.521027						64	4	2	NaN	NaN	NaN	0.42773	1	12978	12978		7.5876	0.60324	1	11438	+		8844	11684	5125	5227	6967	6967					-0.01886249793665229
HFPSLFDEL	9	Unmodified						0	0	0			REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	368.850197	1103.52876	1.6175	0.00059661	-7.7042	-0.0028417	-6.0867	-0.0022451	368.84737860430954	19.372	0.071966	19.372	19.348	19.42	0	1404	37	0.77288127	0.022227407	0.77288127	470.1466		13.521027	-0.028039	0.00017578	0.0016858	NaN	7.5876	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11438	+		8845	11684	5125	5227							-0.01886249793665229
HFPSLFDEL	9	Unmodified						0	0	0			REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	368.850197	1103.52876	1.8206	0.00067154	-7.9461	-0.0029309	-6.1255	-0.0022594	368.84701711574917	19.442	0.048063	19.428	19.404	19.452	-0.014141	1407	40	0.77102906	0.024083614	0.7695096	469.01993		14.6501465	0.028039	-9.1902E-05	-0.0016858	NaN	7.5876	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9319.1	+		8846	11684	5125	5227							-0.01886249793665229
HFPWREEY	8	Unmodified	_HFPWREEY_					0	0	0			REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2670729812	2	582.267073	1162.51959	2.0568	0.0011976	0.82498	0.00048036	2.8818	0.001678	582.2672504705995	21.994	0.21696	21.994	21.946	22.163	0	1440	52	0.7506418	0.031528115	0.7506418	304.22498	0	12.777924						229	10	2	NaN	NaN	NaN	0.84876	1	15223	15223		0.39566	0.065779	1	42002	+		8847	10072	5126	5228	6968	6968					-0.055165983593497
HFPWREEY	8	Unmodified						0	0	0			REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.267073	1162.51959	2.0568	0.0011976	0.82498	0.00048036	2.8818	0.001678	582.2672504705995	21.994	0.21696	21.994	21.946	22.163	0	1440	52	0.7506418	0.031528115	0.7506418	304.22498		12.777924	-0.13764	-0.00016366	0.00075972	NaN	0.39566	229	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42002	+		8848	10072	5126	5228							-0.055165983593497
HFPWREEY	8	Unmodified						0	0	0			REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	REV__PLA2R1|p.E654D|1|0.33|ENSG00000153246|chr2:159987231-159987231|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.267073	1162.51959	1.3118	0.00076384	1.1925	0.00069432	2.5043	0.0014582	582.7690696031204	22.284	0.24102	22.27	22.149	22.39	-0.013731	1440	46	0.7506418	0.027815938	0.7491224	304.22498		11.273407	0.13764	0.00026427	-0.00075972	NaN	0.39566	245	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25199	+		8849	10072	5126	5228							-0.055165983593497
HFQIKRHSFL	10	Unmodified	_HFQIKRHSFL_					0	0	0			REV__ENSG00000172986|ENST00000389617|GXYLT2	REV__ENSG00000172986|ENST00000389617|GXYLT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.24728452373336	3	438.247285	1311.72002	1.3123	0.0005751	8.5612	0.0037519	9.8735	0.004327	438.25086173109634	23.73	0.096397	23.73	23.706	23.803	0	1374	70	0.791392	0.042535603	0.791392	480.4647	0	25.823975						73	5	2	NaN	NaN	NaN	0.77421	1	18983	18983		0.71611	0.22534	1	5572.6	+		8850	10664	5127	5229	6969	6969					0.07663296028135846
HFQTFLSVTW	10	Unmodified	_HFQTFLSVTW_					0	0	0		ENST00000530758.1_1_3:10168517-10168667:+|nuORF	ENST00000530758.1_1_3:10168517-10168667:+|nuORF	ENST00000530758.1_1_3:10168517-10168667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.54862916683334	3	422.548629	1264.62406	1.6266	0.0006873	4.5058	0.0019039	6.1324	0.0025912	422.5503201211358	25.226	0.12067	25.226	25.202	25.322	0	1437	49	0.7524962	0.029675126	0.7524962	457.02753	0	18.023163						152	6	3	NaN	NaN	NaN	0.53991	1	18096	18096		10.244	1.3021	1	21610			8851	7451	5128	5230	6970	6970					0.002331033973632657
HFQTFLSVTW	10	Unmodified						0	0	0		ENST00000530758.1_1_3:10168517-10168667:+|nuORF	ENST00000530758.1_1_3:10168517-10168667:+|nuORF	ENST00000530758.1_1_3:10168517-10168667:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	422.548629	1264.62406	1.4599	0.00061689	4.4872	0.001896	5.9471	0.0025129	422.5510190524705	25.322	0.16884	25.31	25.262	25.431	-0.012011	1437	40	0.7524962	0.024104536	0.75097674	457.02753		14.639832	0.042115	-1.1576E-05	-0.00075972	NaN	10.244	199	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22094			8852	7451	5128	5230							0.002331033973632657
HFRHFPDIF	9	Unmodified	_HFRHFPDIF_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3065324927001	2	608.306532	1214.59851	0.28194	0.00017151	-5.7725	-0.0035115	-5.4906	-0.0033399	608.3029609866447	33.334	0.21716	33.331	33.283	33.5	-0.0024757	1164	70	0.9204082	0.04222405	0.91888875	372.84143	0	17.104248						231	10	2	NaN	NaN	NaN	0.25448	1	16170	16170		21.835	10.87	1	31472			8853	5686	5129	5231	6971	6971					-0.00020326334401943313
HFRHFPDIF	9	Unmodified						0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.306532	1214.59851	0.51369	0.00031248	-7.3597	-0.0044769	-6.846	-0.0041645	608.3025774726289	33.335	0.19309	33.335	33.287	33.48	0	1167	100	0.91857195	0.06058234	0.91857195	372.0976		24.540863	0.0019035	-0.00096802	-0.00015839	NaN	21.835	276	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30779			8854	5686	5129	5231							-0.00020326334401943313
HFRMLKKL	8	Unmodified	_HFRMLKKL_					0	0	0			REV__ENSG00000204704|ENST00000377175|OR2W1	REV__ENSG00000204704|ENST00000377175|OR2W1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.8260465143002	2	536.826047	1071.63754	2.0372	0.0010936	-7.4492	-0.0039989	-5.412	-0.0029053	536.8225193710869	22.79	0.072298	22.79	22.766	22.838	0	1227	43	0.88180584	0.025764108	0.88180584	357.73914	0	10.45224						84	4	3	NaN	NaN	NaN	0.81216	1	11641	11641		10.605	6.1919	1	8823.1	+		8855	11248	5130	5232	6972	6972					0.10458682695639254
HFRMLKKL	8	Unmodified						0	0	0			REV__ENSG00000204704|ENST00000377175|OR2W1	REV__ENSG00000204704|ENST00000377175|OR2W1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.826047	1071.63754	2.0372	0.0010936	-7.4492	-0.0039989	-5.412	-0.0029053	536.8225193710869	22.79	0.072298	22.79	22.766	22.838	0	1227	43	0.88180584	0.025764108	0.88180584	357.73914		10.45224	0	0	0	NaN	10.605	84	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8823.1	+		8856	11248	5130	5232							0.10458682695639254
HFVFTQGW	8	Unmodified	_HFVFTQGW_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.24815194655	2	511.248152	1020.48175	1.7542	0.00089683	0.83011	0.00042439	2.5843	0.0013212	511.2486911445391	21.392	0.21681	21.392	21.368	21.585	0	1296	46	0.8394264	0.027674615	0.8394264	340.7628	0	11.234436						145	10	2	NaN	NaN	NaN	0.81756	1	9378	9378		6.8632	0	1	18622	+		8857	9741	5131	5233	6973	6973					-0.02767064554143417
HGAAAPGA	8	Unmodified	_HGAAAPGA_					0	0	0			REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3208994657	1	651.320899	650.313623	0.86648	0.00056436	-8.0979	-0.0052744	-7.2315	-0.00471	651.3159939531754	39.668	0.14469	39.673	39.673	39.818	0.0053368	795	61	1.1447623	0.03623593	1.1432428	234.11542	0	7.4105988						156	7	2	NaN	NaN	NaN	0.84876	1	1970	1970		0.39566	0	1	16112	+		8858	12937	5132	5234	6974	6974					-0.025521267479575727
HGADGAAP	8	Unmodified	_HGADGAAP_					0	0	0			REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.3107287099	1	695.310729	694.303452	1.1018	0.00076609	6.2926	0.0043753	7.3944	0.0051414	695.3166861387892	24.261	0.09656	24.261	24.188	24.285	0	684	85	1.2116731	0.050502658	1.2116731	247.47585	0	10.314804						111	5	2	NaN	NaN	NaN	0.84692	1	3125	3125		1.4396	0	1	9851.2	+		8859	11961	5133	5235	6975	6975					-0.055927344731912854
HGAGRAAG	8	Unmodified	_HGAGRAAG_					0	0	0		ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3535965776	1	696.353597	695.34632	0.63041	0.00043899	-4.5303	-0.0031547	-3.8999	-0.0027157	696.3507920261335	37.118	0.1686	37.121	37.072	37.241	0.0022507	750	49	1.1719203	0.028945327	1.1704009	239.3497	0	5.9116974						204	8	3	NaN	NaN	NaN	0.84876	1	3082	3082		0.39566	0	1	20547			8860	7785	5134	5236	6976	6976					-0.013539196251031171
HGAGVGPK	8	Unmodified	_HGAGVGPK_					0	0	0			REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3943987598	1	722.394399	721.387122	0.85706	0.00061914	-9.3471	-0.0067523	-8.4901	-0.0061332	722.3878628776328	30.728	0.19307	30.728	30.68	30.873	0	633	64	1.2423272	0.03783846	1.2423272	253.55252	0	7.722641						206	9	2	NaN	NaN	NaN	0.80071	1	3622	3622		9.1232	5.55	1	24750	+		8861	10469	5135	5237	6977	6977					0.01528421694501958
HGAGVGPK	8	Unmodified						0	0	0			REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	REV__nc|ENSG00000167644|Q9GZP8-2|IMUP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.394399	721.387122	0.85706	0.00061914	-9.3471	-0.0067523	-8.4901	-0.0061332	722.3878628776328	30.728	0.19307	30.728	30.68	30.873	0	633	64	1.2423272	0.03783846	1.2423272	253.55252		7.722641	0.0034022	0.00033148	-0.000141	NaN	9.1232	206	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24750	+		8862	10469	5135	5237							0.01528421694501958
HGAKGAPG	8	Unmodified	_HGAKGAPG_					0	0	0		nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-11|COL13A1	nc|ENSG00000197467|Q5TAT6-11|COL13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3630986314001	1	694.363099	693.355822	1.2333	0.00085633	1.713	0.0011894	2.9462	0.0020458	694.365077158232	20.67	0.096432	20.67	20.646	20.742	0	711	40	1.1954219	0.023481488	1.1954219	244.16312	0	4.7960663						77	5	2	NaN	NaN	NaN	0.84876	1	3114	3114		0.39566	0	1	5845.2			8863	5705	5136	5238	6978	6978					-0.003121513395740294
HGALAARV	8	Unmodified	_HGALAARV_					0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	794.4631470270001	1	794.463147	793.455871	1.2147	0.00096505	2.0363	0.0016178	3.251	0.0025828	794.4652379761901	33.335	0.2172	33.335	33.311	33.528	0	609	58	1.2567334	0.03420186	1.2567334	256.05804	0	6.9685974						328	10	4	NaN	NaN	NaN	0.84692	1	4669	4669		1.4396	0	1	47811	+		8864	8644	5137	5239	6979	6979					0.050880859942253664
HGALAARV	8	Unmodified						0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	794.463147	793.455871	1.2147	0.00096505	2.0363	0.0016178	3.251	0.0025828	794.4652379761901	33.335	0.2172	33.335	33.311	33.528	0	609	58	1.2567334	0.03420186	1.2567334	256.05804		6.9685974	-0.010162	-0.00024785	0.00075972	NaN	1.4396	328	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47811	+		8865	8644	5137	5239							0.050880859942253664
HGALAARV	8	Unmodified						0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	794.463147	793.455871	0.9635	0.00076547	2.6797	0.0021289	3.6432	0.0028944	794.4659447332273	33.358	0.19302	33.355	33.307	33.5	-0.0024796	609	58	1.2567334	0.034198165	1.255214	256.058		6.9678345	0.010162	0.00026329	-0.00075972	NaN	1.4396	291	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44928	+		8866	8644	5137	5239							0.050880859942253664
HGAPAAGAA	9	Unmodified	_HGAPAAGAA_					0	0	0		ENST00000483015.1_1_1:1563968-1564546:+|nuORF	ENST00000483015.1_1_1:1563968-1564546:+|nuORF	ENST00000483015.1_1_1:1563968-1564546:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3580132535	1	722.358013	721.350737	0.54254	0.00039191	-5.3336	-0.0038528	-4.7911	-0.0034609	722.354147843894	31.572	0.19307	31.568	31.519	31.712	-0.0044155	666	67	1.2224985	0.039689064	1.2209791	249.50581	0	8.100342						202	9	3	NaN	NaN	NaN	0.65388	1	3537	3537		3.1533	0	1	17494			8867	7216	5138	5240	6980	6980					-0.02108455202198911
HGAPSAAG	8	Unmodified	_HGAPSAAG_					0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3158140878	1	667.315814	666.308538	1.0764	0.00071832	1.7943	0.0011974	2.8708	0.0019157	667.3162196107983	42.243	0.16792	42.243	42.171	42.339	0	753	46	1.1701111	0.027134776	1.1701111	239.18117	0	5.54657						120	8	2	NaN	NaN	NaN	0.84651	1	2485	2485		1.6704	0	1	9974.8	+		8868	8389	5139	5241	6981	6981					-0.03796430610577772
HGAPSAAG	8	Unmodified						0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.315814	666.308538	1.0764	0.00071832	1.7943	0.0011974	2.8708	0.0019157	667.3162196107983	42.243	0.16792	42.243	42.171	42.339	0	753	46	1.1701111	0.027134776	1.1701111	239.18117		5.54657	0.0084267	-0.00074777	-0.00014487	NaN	1.6704	120	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9974.8	+		8869	8389	5139	5241							-0.03796430610577772
HGAPSAAG	8	Unmodified						0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.315814	666.308538	1.0174	0.00067892	3.3961	0.0022663	4.4135	0.0029452	667.3180182113506	42.217	0.09597	42.226	42.178	42.274	0.0089951	750	55	1.1719203	0.03255999	1.1704009	239.55098		6.655548	-0.0084267	0.00032109	0.00014487	NaN	1.6704	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8586.2	+		8870	8389	5139	5241							-0.03796430610577772
HGAPSAAV	8	Unmodified	_HGAPSAAV_					0	0	0			REV__PKD1|p.G1275V|1|0.38|ENSG00000008710|chr16:2111343-2111343|C/A|missense_variant	REV__PKD1|p.G1275V|1|0.38|ENSG00000008710|chr16:2111343-2111343|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804	1	709.362764	708.355488	1.3554	0.00096146	-6.588	-0.0046733	-5.2326	-0.0037118	709.3581079362817	22.477	0.24097	22.477	22.429	22.67	0	714	52	1.1936152	0.030716538	1.1936152	243.69417	0	6.271225						280	11	3	NaN	NaN	NaN	0.84207	1	3389	3389		3.5732	0	1	34782	+		8871	13293	5140	5242	6982	6982					-0.010355710594353695
HGAPSAAV	8	Unmodified	_HGAPSAAV_					0	0	0			REV__PKD1|p.G1275V|1|0.38|ENSG00000008710|chr16:2111343-2111343|C/A|missense_variant	REV__PKD1|p.G1275V|1|0.38|ENSG00000008710|chr16:2111343-2111343|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3627642804	1	709.362764	708.355488	1.0408	0.00073833	-6.0738	-0.0043085	-5.033	-0.0035702	709.3585990908095	24.381	0.21719	24.368	24.32	24.537	-0.012749	720	67	1.1900014	0.039765716	1.1884819	242.95634	0	8.118744						212	10	2	NaN	NaN	NaN	0.84207	1	3327	3327		3.5732	0.41988	1	27798	+		8872	13293	5140	5242	6983	6983					-0.010355710594353695
HGCTLRLL	8	Unmodified	_HGCTLRLL_					0	0	0		ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.75782956335007	2	456.75783	911.501106	0.6649	0.0003037	-1.7613	-0.00080447	-1.0964	-0.00050077	456.75717299523745	41.063	0.2887	41.07	40.95	41.239	0.0074959	1413	43	0.7673241	0.025937617	0.76580465	311.98816	0	10.5460205						311	13	3	NaN	NaN	NaN	0.83211	1	6136	6136		4.9097	2.1245	1	43129			8873	6558	5141	5243	6984	6984					0.04181568465116925
HGDDNGCTPNL	11	Unmodified	_HGDDNGCTPNL_					0	0	0		NRP2|p.W318C|1|0.24|ENSG00000118257|chr2:205726046-205726046|G/T|missense_variant	NRP2|p.W318C|1|0.24|ENSG00000118257|chr2:205726046-205726046|G/T|missense_variant	NRP2|p.W318C|1|0.24|ENSG00000118257|chr2:205726046-205726046|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.48922171280003	3	381.489222	1141.44584	1.6725	0.00063803	-5.3051	-0.0020238	-3.6326	-0.0013858	381.4874221959243	29.304	0.072409	29.296	29.272	29.344	-0.0077229	1500	31	0.71351165	0.018583238	0.7119922	433.85428	0	11.299622						54	4	2	NaN	NaN	NaN	0.74794	1	14017	14017		1.6806	0	1	4382.8			8874	8079	5142	5244	6985	6985					-0.11922934583958522
HGDEWEPL	8	Unmodified	_HGDEWEPL_					0	0	0			REV__ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	REV__ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4264867492001	1	982.426487	981.41921	1.4759	0.00145	7.8446	0.0077067	9.3205	0.0091567	982.4335211864238	26.649	0.14477	26.639	26.59	26.735	-0.010645	294	67	1.4446791	0.039159417	1.4431597	293.3911	0	7.9526367						204	7	3	NaN	NaN	NaN	0.65075	1	7749	7749		22.126	9.5385	1	17282	+		8875	8155	5143	5245	6986	6986					-0.07224255412995717
HGDIFMNRT	9	Unmodified	_HGDIFMNRT_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.17479738543335	3	364.174797	1089.50256	1.82	0.00066281	-0.54677	-0.00019912	1.2733	0.00046369	364.17557646091296	19.564	0.048004	19.564	19.564	19.612	0	1494	37	0.7172283	0.022297442	0.7172283	436.3618	0	13.565796						46	3	2	NaN	NaN	NaN	0.56671	1	12366	12366		3.9281	0.66711	1	4349.1			8876	5220	5144	5246	6987	6987					-0.038608422367815365
HGESLLLHV	9	Unmodified	_HGESLLLHV_					0	0	0			REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.52230296600004	3	335.522303	1003.54508	1.99	0.0006677	-2.2791	-0.00076469	-0.28905	-9.6984E-05	335.5215889350218	16.566	0.04797	16.566	16.542	16.59	0	1452	37	0.74322224	0.022263587	0.74322224	452.65894	0	13.559631						48	3	2	NaN	NaN	NaN	0.55027	1	8737	8737		4.3102	1.7107	1	3993.7	+		8877	11984	5145	5247	6988	6988					0.04344876163099798
HGESLLLHV	9	Unmodified						0	0	0			REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	335.522303	1003.54508	1.99	0.0006677	-2.2791	-0.00076469	-0.28905	-9.6984E-05	335.5215889350218	16.566	0.04797	16.566	16.542	16.59	0	1452	37	0.74322224	0.022263587	0.74322224	452.65894		13.559631	-0.039764	0.00034459	0.00075972	NaN	4.3102	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3993.7	+		8878	11984	5145	5247							0.04344876163099798
HGESLLLHV	9	Unmodified						0	0	0			REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	335.522303	1003.54508	2.4758	0.00083068	-2.9904	-0.0010033	-0.51458	-0.00017265	335.5205673839212	16.658	0.095922	16.645	16.621	16.717	-0.013294	1452	34	0.74322224	0.020409405	0.7417028	452.65894		12.430328	0.039764	-0.00037135	-0.00075972	NaN	4.3102	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4699.5	+		8879	11984	5145	5247							0.04344876163099798
HGESNSVLI	9	Unmodified	_HGESNSVLI_					0	0	0		ENST00000495601.1_1_2:148716324-148733527:-|nuORF;ENST00000496670.6_1_2:148709144-148730385:-|nuORF;ENSG00000115947|ENST00000392857|ORC4	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENST00000495601.1_1_2:148716324-148733527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.24580622285004	2	478.245806	954.47706	3.0336	0.0014508	5.7963	0.002772	8.8299	0.0042228	478.24891950157087	24.502	0.024227	24.489	24.489	24.513	-0.012747	1356	28	0.8024889	0.016640782	0.8009695	326.0677	0	6.7614746						27	2	2	NaN	NaN	NaN	0.66529	1	7049	7049		2.1763	0.73677	1	1353.9			8880	2050	5146	5248	6989	6989					-0.001999934875584586
HGGAPGGG	8	Unmodified	_HGGAPGGG_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.2739492731001	1	609.273949	608.266673	1.3696	0.00083443	2.6033	0.0015861	3.9729	0.0024206	609.2759664215318	57.045	0.072102	57.045	57.021	57.093	0	810	34	1.1356999	0.01994145	1.1356999	232.59227	0	4.0840454						56	4	2	NaN	NaN	NaN	0.84876	1	765	765		0.39566	0	1	3900.2	+		8881	10713	5147	5249	6990	6990					-0.05312986299088607
HGGATPGR	8	Unmodified	_HGGATPGR_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.3798113281001	1	752.379811	751.372535	2.0133	0.0015148	-6.2935	-0.0047351	-4.2802	-0.0032204	752.3754663944798	23.392	0.21717	23.379	23.331	23.548	-0.013296	588	109	1.2693287	0.064717054	1.2678093	258.87057	0	13.198608						241	10	2	NaN	NaN	NaN	0.83582	1	4003	4003		4.4131	0	1	32179	+		8882	13211	5148	5250	6991	6991					-0.013096504536179054
HGGCAGAM	8	Unmodified	_HGGCAGAM_					0	0	0			REV__ENST00000489026.5_1_3:51733537-51733567:+|nuORF	REV__ENST00000489026.5_1_3:51733537-51733567:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.2650408457001	1	703.265041	702.257764	1.8498	0.0013009	7.9882	0.0056178	9.8381	0.0069188	703.270554660627	25.901	0.14483	25.89	25.769	25.914	-0.0116	705	52	1.1990347	0.0307132	1.1975152	244.84087	0	6.271591						124	7	2	NaN	NaN	NaN	0.84651	1	3190	3190		1.6704	0	1	9318.3	+		8883	12447	5149	5251	6992	6992					-0.10527419251422998
HGGCRGGA	8	Unmodified	_HGGCRGGA_					0	0	0			REV__ENST00000368090.3_1_1:160001551-160001638:-|nuORF	REV__ENST00000368090.3_1_1:160001551-160001638:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.3100172034001	1	714.310017	713.302741	0.64774	0.00046269	8.5926	0.0061378	9.2404	0.0066005	714.3178885598171	37.554	0.096245	37.554	37.554	37.65	0	720	43	1.1900014	0.025300026	1.1900014	242.9243	0	5.164673						69	5	2	NaN	NaN	NaN	0.84727	1	3475	3475		1.2418	0.44196	1	4172	+		8884	11869	5150	5252	6993	6993					-0.06537852393887533
HGGDSSSR	8	Unmodified	_HGGDSSSR_					0	0	0			REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF	REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.67554810945006	2	401.675548	801.336543	0.98463	0.0003955	-0.61399	-0.00024663	0.37064	0.00014888	401.67507668823197	32.73	0.096535	32.727	32.703	32.8	-0.0031052	1449	34	0.74507743	0.02040714	0.743558	303.56018	0	8.314331						79	5	2	NaN	NaN	NaN	0.82797	1	4667	4667		5.4659	0.55612	1	9852.5	+		8885	12131	5151	5253	6994	6994					-0.07207152421131013
HGGGGALC	8	Unmodified	_HGGGGALC_					0	0	0			REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF	REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2929701557	1	671.29297	670.285694	0.84697	0.00056857	-8.1973	-0.0055028	-7.3503	-0.0049342	671.287645610276	32.706	0.24134	32.703	32.583	32.824	-0.0031052	1119	52	0.9479278	0.031165361	0.94640833	193.74182	0	6.3697205						204	11	2	NaN	NaN	NaN	0.84876	1	2514	2514		0.39566	0	1	20048	+		8886	12455	5152	5254	6995	6995					-0.06263772999704997
HGGGGCAG	8	Unmodified	_HGGGGCAG_					0	0	0			REV__ENST00000567436.1_1_16:30204741-30204941:-|nuORF	REV__ENST00000567436.1_1_16:30204741-30204941:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2303698989001	1	615.23037	614.223093	1.2288	0.00075599	6.5038	0.0040013	7.7326	0.0047573	615.2350903430441	28.605	0.12068	28.605	28.532	28.653	0	1194	28	0.902037	0.016542077	0.902037	184.6986	0	3.3871002						53	6	2	NaN	NaN	NaN	0.84945	1	961	961		0	0	1	2664.9	+		8887	12809	5153	5255	6996	6996					-0.0994491906787971
HGGGGGGA	8	Unmodified	_HGGGGGGA_					0	0	0		ENSG00000198914|ENST00000361360|POU3F3	REV__ENST00000394166.7_1_15:96881902-96882223:+|nuORF	REV__ENST00000394166.7_1_15:96881902-96882223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2426491447001	1	569.242649	568.235373	2.0281	0.0011545	7.7966	0.0044381	9.8246	0.0055926	569.2485336807399	14.525	0.047949	14.525	14.501	14.549	0	1263	22	0.85970795	0.012896717	0.85970795	176.3408	0	2.6453247						24	3	2	NaN	NaN	NaN	0.84945	1	491	491		0	0	1	1472.3			8888	5837	5154	5256	6997	6997					-0.0660155933318265
HGGGGGGG	8	Unmodified	_HGGGGGGG_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1;POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant;nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000184486|ENST00000328345|POU3F2;ENSG00000183783|ENST00000360029|KCTD8;ENSG00000124766|ENST00000244745|SOX4;ENSG00000152784|ENST00000415738|PRDM8;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENSG00000103241|ENST00000262426|FOXF1;ENSG00000178691|ENST00000322652|SUZ12;ENST00000601673.1_7:6523004-6523760:+|nuORF	ENSG00000054598|ENST00000645831|FOXC1;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;ENSG00000178691|ENST00000322652|SUZ12;ENST00000601673.1_7:6523004-6523760:+|nuORF;REV__nc|ENSG00000171634|Q12830-4|BPTF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2269990805	1	555.226999	554.219723	1.5013	0.00083357	-8.1772	-0.0045402	-6.6759	-0.0037067	555.2232393605867	15.702	0.048042	15.702	15.678	15.726	0	1257	31	0.86339295	0.018420875	0.86339295	177.20152	0	3.7806702						53	3	2	NaN	NaN	NaN	0.84945	1	451	451		0	0	1	3476.5			8889	4204;1494;593;5119;7770;10629	5155	5257	6998	6998					-0.07521845850237696
HGGGGPPP	8	Unmodified	_HGGGGPPP_					0	0	0			REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3208994657001	1	675.320899	674.313623	-0.74659	-0.00050419	2.8822	0.0019464	2.1356	0.0014422	675.3241373848889	56.467	0.072021	56.466	56.466	56.538	-0.00056458	630	79	1.2441287	0.046845198	1.2426093	254.25029	0	9.573273						208	4	4	NaN	NaN	NaN	0.84876	1	2619	2619		0.39566	0	1	34273	+		8890	11972	5156	5258	6999	6999					-0.036561267479441995
HGGGGPPP	8	Unmodified						0	0	0			REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.320899	674.313623	1.4797	0.00099928	-0.62209	-0.00042011	0.85762	0.00057917	675.3218330263533	56.469	0.16785	56.469	56.421	56.589	0	636	94	1.2405256	0.055880785	1.2405256	253.51398		11.4198	0.0012953	-0.0010752	-0.0010418	NaN	0.39566	268	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38841	+		8891	11972	5156	5258							-0.036561267479441995
HGGGGPPP	8	Unmodified						0	0	0			REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.320899	674.313623	-0.74659	-0.00050419	2.8822	0.0019464	2.1356	0.0014422	675.3241373848889	56.467	0.072021	56.466	56.466	56.538	-0.00056458	630	79	1.2441287	0.046845198	1.2426093	254.25029		9.573273	-0.0012953	0.0012913	0.0010418	NaN	0.39566	208	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34273	+		8892	11972	5156	5258							-0.036561267479441995
HGGLTGSS	8	Unmodified	_HGGLTGSS_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3369434604001	1	715.336943	714.329667	0.68299	0.00048857	-7.5359	-0.0053907	-6.8529	-0.0049021	715.3323018121074	41.811	0.07217	41.811	41.786	41.859	0	696	67	1.2044523	0.039731503	1.2044523	245.8677	0	8.110504						116	4	2	NaN	NaN	NaN	0.8439	1	3506	3506		3.1533	0.97701	1	10847			8893	5515	5157	5259	7000	7000					-0.03892465301703396
HGGLTGSS	8	Unmodified						0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.336943	714.329667	0.65439	0.00046811	-8.3749	-0.0059909	-7.7205	-0.0055228	715.3312042418103	41.641	0.072044	41.649	41.601	41.673	0.0082588	690	61	1.2080631	0.036108017	1.2065437	246.6048		7.370819	-0.080856	-0.0002334	0.0010457	NaN	3.1533	119	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12745			8894	5515	5157	5259							-0.03892465301703396
HGGPAAGG	8	Unmodified	_HGGPAAGG_					0	0	0		chr3:48561668-48561760|509|19.69|0.72|4.77|-|2|PFKFB4,PFKFB4|1	chr3:48561668-48561760|509|19.69|0.72|4.77|-|2|PFKFB4,PFKFB4|1	chr3:48561668-48561760|509|19.69|0.72|4.77|-|2|PFKFB4,PFKFB4|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.2895993373002	1	623.289599	622.282323	-0.77359	-0.00048217	6.8073	0.0042429	6.0337	0.0037607	623.294258797104	56.707	0.095993	56.706	56.658	56.754	-0.00056458	789	52	1.1483859	0.030798912	1.1468664	235.07408	0	6.3045044						124	5	2	NaN	NaN	NaN	0.84876	1	1111	1111		0.39566	0	1	9893.5			8895	144	5158	5260	7001	7001					-0.0439269978203356
HGGPGSGG	8	Unmodified	_HGGPGSGG_					0	0	0			REV__nc|ENSG00000293543|Q6B8I1-4|DUSP13A	REV__nc|ENSG00000293543|Q6B8I1-4|DUSP13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.2688638952002	1	625.268864	624.261587	1.6134	0.0010088	-1.4365	-0.0008982	0.17694	0.00011063	625.2679667736264	19.396	0.095991	19.396	19.396	19.492	0	1134	79	0.9387595	0.04772383	0.9387595	192.15062	0	9.768372						160	5	2	NaN	NaN	NaN	0.84692	1	1218	1218		1.4396	0	1	12814	+		8896	13260	5159	5261	7002	7002					-0.06557290161697438
HGGPPGGK	8	Unmodified	_HGGPPGGK_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3630986314001	1	706.363099	705.355822	1.3742	0.00097065	-7.0832	-0.0050033	-5.7091	-0.0040327	706.3576993750816	36.565	0.38527	36.567	36.374	36.759	0.0016747	696	88	1.2044523	0.052381873	1.2029328	245.92656	0	10.695404						695	17	3	NaN	NaN	NaN	0.84692	1	3256	3256		1.4396	0.19772	1	167470			8897	2526	5160	5262	7003	7003					-0.008641513395673428
HGGRTGPG	8	Unmodified	_HGGRTGPG_					0	0	0			REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3641612639002	1	738.364161	737.356885	1.4477	0.0010689	4.1804	0.0030867	5.6281	0.0041556	738.3668636230897	20.429	0.24076	20.415	20.367	20.608	-0.014141	606	91	1.2585332	0.05400586	1.2570138	256.75632	0	11.017868						304	11	3	NaN	NaN	NaN	0.84207	1	3802	3802		3.5732	0	1	32454	+		8898	12800	5161	5263	7004	7004					-0.022299369706615835
HGGSGGGR	8	Unmodified	_HGGSGGGR_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.66224376895	2	342.662244	683.309935	1.6852	0.00057747	-0.83069	-0.00028465	0.85455	0.00029282	342.66274219681145	28.629	0.072363	28.629	28.605	28.677	0	1530	37	0.6949163	0.022326529	0.6949163	283.94382	0	9.12265						94	4	3	NaN	NaN	NaN	0.84887	1	2904	2904		0.32989	0	1	7640	+		8899	10957	5162	5264	7005	7005					-0.04438796521810673
HGGVPGGK	8	Unmodified	_HGGVPGGK_					0	0	0		ENSG00000135413|ENST00000257867|LACRT	ENSG00000135413|ENST00000257867|LACRT	ENSG00000135413|ENST00000257867|LACRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486956002	1	708.378749	707.371472	0.80811	0.00057245	-6.3941	-0.0045295	-5.586	-0.003957	708.3743621555783	37.287	0.26476	37.289	37.217	37.482	0.0022507	729	100	1.184579	0.059626102	1.1830596	241.85568	0	12.173874						585	12	3	NaN	NaN	NaN	0.84876	1	3307	3307		0.39566	0.065779	1	79065			8900	2939	5163	5265	7006	7006					0.006081351774810173
HGHISVVQL	9	Unmodified	_HGHISVVQL_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2799833912	2	495.279983	988.545414	1.4473	0.00071683	-3.6575	-0.0018115	-2.2101	-0.0010946	495.27841488009426	21.175	0.072296	21.175	21.175	21.248	0	1269	34	0.8560222	0.020274997	0.8560222	347.64917	0	8.2341						66	4	2	NaN	NaN	NaN	0.45297	1	8170	8170		11.548	0.94349	1	6978.9			8901	4443	5164	5266	7007	7007					0.050682958829384006
HGHTLTTKI	9	Unmodified	_HGHTLTTKI_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5632550020999	1	1007.56326	1006.55598	1.3029	0.0013128	2.0919	0.0021077	3.3948	0.0034205	1007.5622471884776	30.51	0.072382	30.505	30.48	30.553	-0.0057545	195	82	1.5033154	0.047873378	1.501796	305.19363	0	9.718964						119	4	2	NaN	NaN	NaN	0.63698	1	8677	8677		3.9685	1.1833	1	10220			8902	2401	5165	5267	7008	7008					0.052962785373551924
HGHTLTTKI	9	Unmodified						0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1007.56326	1006.55598	1.4268	0.0014376	1.3418	0.0013519	2.7686	0.0027895	1007.5605100030958	30.535	0.048286	30.535	30.511	30.56	0	201	79	1.4997677	0.046097875	1.4997677	304.47336		9.35849	0.015441	-0.00041006	-0.0010142	NaN	3.9685	96	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6754.1			8903	2401	5165	5267							0.052962785373551924
HGHYASPLL	9	Unmodified	_HGHYASPLL_					0	0	0			REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.75888380835005	2	497.758884	993.503215	2.225	0.0011075	-2.6154	-0.0013018	-0.39034	-0.00019429	497.75774702175823	18.724	0.19195	18.724	18.7	18.892	0	1314	85	0.8283535	0.0516845	0.8283535	336.38928	0	20.98877						245	9	2	NaN	NaN	NaN	0.36492	1	8340	8340		15.175	0	1	45791	+		8904	12355	5166	5268	7009	7009					0.006203204745702351
HGHYASPLL	9	Unmodified						0	0	0			REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.758884	993.503215	2.225	0.0011075	-2.6154	-0.0013018	-0.39034	-0.00019429	497.75774702175823	18.724	0.19195	18.724	18.7	18.892	0	1314	85	0.8283535	0.0516845	0.8283535	336.38928		20.98877	-0.0036189	-0.0014537	0.0016828	NaN	15.175	245	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45791	+		8905	12355	5166	5268							0.006203204745702351
HGHYASPLL	9	Unmodified						0	0	0			REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	REV__ENST00000476487.5_1_5:177651591-177651855:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.758884	993.503215	1.3968	0.00069525	0.20442	0.00010175	1.6012	0.000797	497.7583460257849	18.746	0.19219	18.731	18.731	18.924	-0.014059	1317	82	0.8265074	0.049830556	0.82498795	335.63956		20.23587	0.0036189	0.0013534	-0.0016828	NaN	15.175	233	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33404	+		8906	12355	5166	5268							0.006203204745702351
HGIVEVDPM	9	Unmodified	_HGIVEVDPM_					0	0	0		ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2	ENST00000533860.5_1_11:130009456-130013340:+|nuORF	ENST00000533860.5_1_11:130009456-130013340:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.74458480235	2	498.744585	995.474617	1.3974	0.00069692	-3.5851	-0.001788	-2.1877	-0.0010911	498.7432541998419	20.983	0.07214	20.983	20.959	21.031	0	1335	43	0.8154261	0.025864601	0.8154261	331.13058	0	10.503174						109	4	3	NaN	NaN	NaN	0.45297	1	8405	8405		11.548	4.6852	1	7928.6			8907	959	5167	5269	7010	7010					-0.023301652168811415
HGKMFCLFKE	10	Unmodified	_HGKMFCLFKE_					0	0	0			REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.30428661695	2	620.304287	1238.59402	0.55604	0.00034491	3.9661	0.0024602	4.5221	0.0028051	620.3068350958616	35.215	0.072372	35.215	35.215	35.287	-4.5776E-05	1164	46	0.9204082	0.027543366	0.91888875	372.76022	0	11.154907						86	4	2	NaN	NaN	NaN	0.74854	1	16761	16761		4.7291	0.31598	1	9392.4	+		8908	10482	5168	5270	7011	7011					-0.015732948638515154
HGKMFCLFKE	10	Unmodified						0	0	0			REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.304287	1238.59402	0.34166	0.00021193	3.9859	0.0024725	4.3276	0.0026844	620.8080289574681	35.217	0.07238	35.217	35.192	35.265	0	1167	43	0.91857195	0.025711298	0.91857195	372.01654		10.412964	0.00071841	1.597E-05	-0.00015839	NaN	4.7291	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6556.4	+		8909	10482	5168	5270							-0.015732948638515154
HGKMFCLFKE	10	Unmodified						0	0	0			REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.304287	1238.59402	0.55604	0.00034491	3.9661	0.0024602	4.5221	0.0028051	620.3068350958616	35.215	0.072372	35.215	35.215	35.287	-4.5776E-05	1164	46	0.9204082	0.027543366	0.91888875	372.76022		11.154907	-0.00071841	-8.6278E-06	0.00015839	NaN	4.7291	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9392.4	+		8910	10482	5168	5270							-0.015732948638515154
HGLDTALLL	9	Unmodified	_HGLDTALLL_					0	0	0			REV__ENST00000435224.2_1_11:34379216-34379549:-|nuORF	REV__ENST00000435224.2_1_11:34379216-34379549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.7767422105	2	476.776742	951.538931	0.70558	0.0003364	0.51494	0.00024551	1.2205	0.00058191	476.77660695812347	20.959	0.14439	20.945	20.921	21.065	-0.014088	1326	58	0.8209676	0.03508115	0.81944823	333.5906	0	14.254791						183	7	4	NaN	NaN	NaN	0.20577	1	6995	6995		24.961	4.4056	1	27592	+		8911	12170	5169	5271	7012	7012					0.06122357931565148
HGLFMEGA	8	Unmodified	_HGLFMEGA_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.19981315795	2	431.199813	860.385073	1.0197	0.0004397	6.8597	0.0029579	7.8794	0.0033976	431.2023017924357	20.742	0.096458	20.742	20.694	20.79	0	1401	34	0.77473325	0.020371795	0.77473325	315.27823	0	8.290344						103	5	3	NaN	NaN	NaN	0.72043	1	5533	5533		17.78	4.0433	1	14865			8912	356;1572	5170	5272	7013	7013					-0.05070375105594849
HGLFMEGA	8	Unmodified	_HGLFMEGA_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.19981315795	2	431.199813	860.385073	1.1856	0.00051123	6.9716	0.0030062	8.1572	0.0035174	431.20286916620927	20.718	0.12053	20.718	20.694	20.814	0	1506	67	0.70979416	0.040891945	0.70979416	288.85123	0	16.641022						263	6	3	NaN	NaN	NaN	0.76633	1	5534	5534		13.737	1.1492	1	70855			8913	356;1572	5170	5272	7014	7014					-0.05070375105594849
HGLFMEGA	8	Unmodified	_HGLFMEGA_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000105877|ENST00000409508|DNAH11	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.19981315795	2	431.199813	860.385073	0.78945	0.00034041	8.3253	0.0035899	9.1148	0.0039303	431.2031333261912	20.742	0.21678	20.728	20.704	20.921	-0.014088	1503	70	0.711653	0.04274839	0.71013355	289.6077	0	17.396484						344	10	4	NaN	NaN	NaN	0.62311	1	5397	5397		23.85	8.8376	1	72144			8914	356;1572	5170	5272	7015	7015					-0.05070375105594849
HGLGGAAA	8	Unmodified	_HGLGGAAA_					0	0	0			REV__ENST00000394936.7_1_10:73576496-73576643:-|nuORF	REV__ENST00000394936.7_1_10:73576496-73576643:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3365495298999	1	653.33655	652.329273	1.7855	0.0011665	-2.611	-0.0017059	-0.82554	-0.00053935	653.3356582500451	26.215	0.1448	26.215	26.191	26.336	0	822	49	1.1284465	0.029019833	1.1284465	230.76398	0	5.9344635						140	7	3	NaN	NaN	NaN	0.84945	1	2114	2114		0	0	1	13501	+		8915	9523	5171	5273	7016	7016					-0.010798402309205812
HGNLGVAG	8	Unmodified	_HGNLGVAG_					0	0	0		ENST00000399012.6_3_X:205421-209757:+|nuORF	ENST00000399012.6_3_X:205421-209757:+|nuORF	ENST00000399012.6_3_X:205421-209757:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3736633177001	1	724.373663	723.366387	1.0111	0.00073239	3.6592	0.0026506	4.6703	0.003383	724.3770117527948	29.738	0.14476	29.731	29.683	29.828	-0.0070648	621	76	1.2495319	0.04500246	1.2480124	255.00989	0	9.184311						231	7	3	NaN	NaN	NaN	0.84207	1	3583	3583		3.5732	0.41988	1	27490			8916	6819	5172	5274	7017	7017					-0.0063616868513918234
HGPHSMGS	8	Unmodified	_HGPHSMGS_					0	0	0			REV__ENST00000424126.1_1_X:151080912-151081368:-|nuORF	REV__ENST00000424126.1_1_X:151080912-151081368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3358976029002	1	809.335898	808.328621	1.6452	0.0013315	-0.44693	-0.00036172	1.1983	0.0009698	809.3349064269555	24.26	0.072412	24.248	24.224	24.296	-0.012749	570	85	1.2801172	0.05030334	1.2785977	260.7408	0	10.246033						97	4	2	NaN	NaN	NaN	0.72043	1	4772	4772		17.78	1.3637	1	12438	+		8917	12121	5173	5275	7018	7018					-0.08321002942250288
HGPHSMGS	8	Unmodified						0	0	0			REV__ENST00000424126.1_1_X:151080912-151081368:-|nuORF	REV__ENST00000424126.1_1_X:151080912-151081368:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.335898	808.328621	1.6452	0.0013315	-0.44693	-0.00036172	1.1983	0.0009698	809.3349064269555	24.26	0.072412	24.248	24.224	24.296	-0.012749	570	85	1.2801172	0.05030334	1.2785977	260.7408		10.246033	0.0055329	-0.00020311	-0.00075972	NaN	17.78	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12438	+		8918	12121	5173	5275							-0.08321002942250288
HGPPAKKKS	9	Unmodified	_HGPPAKKKS_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.5577756937001	1	949.557776	948.550499	0.76583	0.0007272	8.9195	0.0084696	9.6853	0.0091968	949.5669378669493	41.905	0.19191	41.914	41.89	42.082	0.0089951	876	46	1.0957676	0.027257204	1.0942482	222.63954	0	5.538162						169	9	2	NaN	NaN	NaN	0.68136	1	6924	6924		0.79988	0.40421	1	21359			8919	4021	5174	5276	7019	7019					0.07416599745567964
HGQPAGPH	8	Unmodified	_HGQPAGPH_					0	0	0		ENST00000378895.8_1_17:27228620-27229882:-|nuORF	ENST00000378895.8_1_17:27228620-27229882:-|nuORF	ENST00000378895.8_1_17:27228620-27229882:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.3798113281001	1	800.379811	799.372535	-0.15343	-0.00012281	-0.27716	-0.00022183	-0.43059	-0.00034464	800.3790598174227	55.218	0.09626	55.217	55.193	55.29	-0.00061798	480	58	1.3339561	0.03404522	1.3324367	271.75787	0	6.9358215						131	5	2	NaN	NaN	NaN	0.82797	1	4649	4649		5.4659	2.3125	1	12754			8920	6716	5175	5277	7020	7020					-0.035176504536138964
HGQRSWVM	8	Unmodified	_HGQRSWVM_					0	0	0			REV__ENST00000308020.5_1_11:490919-491072:+|nuORF	REV__ENST00000308020.5_1_11:490919-491072:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7427108154	2	500.742711	999.470869	1.2488	0.00062531	-1.7549	-0.00087874	-0.5061	-0.00025343	500.74127668981396	32.634	0.096539	32.631	32.607	32.703	-0.0031052	1305	37	0.83389086	0.022143304	0.8323714	338.61032	0	8.991516						67	5	2	NaN	NaN	NaN	0.84455	1	8374	8374		2.7852	0	1	4497.2	+		8921	11679	5176	5278	7021	7021					-0.028887902000860777
HGRGAGGG	8	Unmodified	_HGRGAGGG_					0	0	0			REV__ENSG00000143869|ENST00000272224|GDF7	REV__ENSG00000143869|ENST00000272224|GDF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	1.3507	0.00090268	3.0912	0.0020659	4.4419	0.0029686	668.3240629536401	34.324	0.19288	34.324	34.228	34.421	0	660	43	1.2261056	0.025243282	1.2261056	250.61932	0	5.159775						118	9	2	NaN	NaN	NaN	0.84887	1	2525	2525		0.32989	0	1	7570	+		8922	9883	5177	5279	7022	7022					-0.03194492659190473
HGRGAGGG	8	Unmodified						0	0	0			REV__ENSG00000143869|ENST00000272224|GDF7	REV__ENSG00000143869|ENST00000272224|GDF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	668.322296	667.31502	1.3507	0.00090268	3.0912	0.0020659	4.4419	0.0029686	668.3240629536401	34.324	0.19288	34.324	34.228	34.421	0	660	43	1.2261056	0.025243282	1.2261056	250.61932		5.159775	-0.1678	0.00027734	0.016102	NaN	0.32989	118	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7570	+		8923	9883	5177	5279							-0.03194492659190473
HGRGAGGG	8	Unmodified						0	0	0			REV__ENSG00000143869|ENST00000272224|GDF7	REV__ENSG00000143869|ENST00000272224|GDF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	668.322296	667.31502	1.3792	0.00092173	2.4432	0.0016328	3.8223	0.0025545	668.3238966005955	34.66	0.096447	34.66	34.612	34.708	-0.00064468	711	55	1.1954219	0.032521605	1.1939025	244.34752		6.6474915	0.1678	-0.00015578	-0.016102	NaN	0.32989	116	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12323	+		8924	9883	5177	5279							-0.03194492659190473
HGRGGPGG	8	Unmodified	_HGRGGPGG_					0	0	0		ENST00000400979.2_1_1:166244929-166246012:-|nuORF	ENST00000400979.2_1_1:166244929-166246012:-|nuORF	ENST00000400979.2_1_1:166244929-166246012:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3379465134002	1	694.337947	693.33067	0.34645	0.00024056	2.9524	0.00205	3.2988	0.0022905	694.3401688287142	33.623	0.24132	33.621	33.501	33.742	-0.0018501	630	91	1.2441287	0.054086804	1.2426093	254.11157	0	11.04715						246	11	2	NaN	NaN	NaN	0.84897	1	3042	3042		0.27539	0.27539	1	21007			8925	6830	5178	5280	7023	7023					-0.028262061421401086
HGSGHCGP	8	Unmodified	_HGSGHCGP_					0	0	0			REV__ENST00000531999.5_1_11:834538-836303:+|nuORF	REV__ENST00000531999.5_1_11:834538-836303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.2940327882001	1	751.294033	750.286756	2.2387	0.0016819	-1.2916	-0.00097034	0.94718	0.00071161	751.2927625178601	26.07	0.19311	26.059	25.987	26.18	-0.011137	645	79	1.2351195	0.046870112	1.2336	251.90038	0	9.559097						200	9	2	NaN	NaN	NaN	0.84876	1	3979	3979		0.39566	0	1	16269	+		8926	12645	5179	5281	7024	7024					-0.0983755863078386
HGSSVKVC	8	Unmodified	_HGSSVKVC_					0	0	0		ENST00000469733.5_1_1:2129472-2132643:-|nuORF;ENST00000487186.5_1_1:2132487-2144100:-|nuORF	ENST00000469733.5_1_1:2129472-2132643:-|nuORF	ENST00000469733.5_1_1:2129472-2132643:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.4032488866001	1	816.403249	815.395972	1.4464	0.0011808	-6.9539	-0.0056772	-5.5076	-0.0044964	816.3967909574816	30.97	0.09656	30.97	30.97	31.066	0	450	40	1.3518641	0.023269296	1.3518641	275.31476	0	4.7389526						65	5	2	NaN	NaN	NaN	0.82797	1	4960	4960		5.4659	1.8926	1	4020.5			8927	7141	5180	5282	7025	7025					-0.01910972731320726
HGTAPGRG	8	Unmodified	_HGTAPGRG_					0	0	0		ENST00000326737.3_1_11:46625152-46625203:-|nuORF	ENST00000326737.3_1_11:46625152-46625203:-|nuORF	ENST00000326737.3_1_11:46625152-46625203:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.3798113281001	1	752.379811	751.372535	1.8954	0.0014261	-8.9051	-0.0067	-7.0097	-0.0052739	752.3732027030321	23.369	0.1447	23.369	23.345	23.489	0	591	94	1.26753	0.055725694	1.26753	258.50375	0	11.364853						212	7	2	NaN	NaN	NaN	0.74229	1	4086	4086		16.417	7.2934	1	31049			8928	6494	5181	5283	7026	7026					-0.013096504536179054
HGTAPGRG	8	Unmodified						0	0	0		ENST00000326737.3_1_11:46625152-46625203:-|nuORF	ENST00000326737.3_1_11:46625152-46625203:-|nuORF	ENST00000326737.3_1_11:46625152-46625203:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.379811	751.372535	2.0133	0.0015148	-6.2935	-0.0047351	-4.2802	-0.0032204	752.3754663944798	23.392	0.21717	23.379	23.331	23.548	-0.013296	588	109	1.2693287	0.064717054	1.2678093	258.87057		13.198608	0.0051793	0.00084691	0.00013966	NaN	16.417	241	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32179			8929	6494	5181	5283							-0.013096504536179054
HGTCGRGL	8	Unmodified	_HGTCGRGL_					0	0	0			REV__ENST00000602095.5_1_19:53589175-53589337:-|nuORF	REV__ENST00000602095.5_1_19:53589175-53589337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.3831821465	1	800.383182	799.375906	1.9672	0.0015745	-3.1868	-0.0025507	-1.2196	-0.00097612	800.3789847943809	55.22	0.14425	55.22	55.172	55.316	0	483	55	1.3321642	0.032255054	1.3321642	271.39282	0	6.571106						185	7	3	NaN	NaN	NaN	0.81251	1	4741	4741		7.5404	0.67717	1	14965	+		8930	12962	5182	5284	7027	7027					-0.03180723671277974
HGTCGRGL	8	Unmodified						0	0	0			REV__ENST00000602095.5_1_19:53589175-53589337:-|nuORF	REV__ENST00000602095.5_1_19:53589175-53589337:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	800.383182	799.375906	1.9672	0.0015745	-3.1868	-0.0025507	-1.2196	-0.00097612	800.3789847943809	55.22	0.14425	55.22	55.172	55.316	0	483	55	1.3321642	0.032255054	1.3321642	271.39282		6.571106	0.0013857	0.00042814	-0.00013621	NaN	7.5404	185	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14965	+		8931	12962	5182	5284							-0.03180723671277974
HGTSGSDE	8	Unmodified	_HGTSGSDE_					0	0	0		ENST00000468633.1_1_10:23408104-23409788:+|nuORF;ENSG00000148450|ENST00000376510|MSRB2	ENST00000468633.1_1_10:23408104-23409788:+|nuORF	ENST00000468633.1_1_10:23408104-23409788:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.3009518846	1	789.300952	788.293675	1.8611	0.001469	-6.6421	-0.0052426	-4.781	-0.0037737	789.2948831534093	34.638	0.14479	34.638	34.565	34.71	0	615	34	1.2531329	0.019803166	1.2531329	255.35294	0	4.0353394						87	7	2	NaN	NaN	NaN	0.84727	1	4600	4600		1.2418	0	1	5348.8			8932	3638	5183	5285	7028	7028					-0.10893967269237237
HGVGGLLV	8	Unmodified	_HGVGGLLV_					0	0	0			REV__ENST00000494751.5_1_6:33385551-33385777:-|nuORF	REV__ENST00000494751.5_1_6:33385551-33385777:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.4460999793	1	751.4461	750.438824	0.95027	0.00071408	-8.6245	-0.0064808	-7.6742	-0.0057668	751.4401681728568	34.035	0.14484	34.035	33.986	34.131	0	486	73	1.3303722	0.043029785	1.3303722	271.32602	0	8.775818						223	7	2	NaN	NaN	NaN	0.81214	1	4074	4074		7.5902	0	1	20391	+		8933	12491	5184	5286	7029	7029					0.05362165388419271
HGVGGLLV	8	Unmodified						0	0	0			REV__ENST00000494751.5_1_6:33385551-33385777:-|nuORF	REV__ENST00000494751.5_1_6:33385551-33385777:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.4461	750.438824	0.95027	0.00071408	-8.6245	-0.0064808	-7.6742	-0.0057668	751.4401681728568	34.035	0.14484	34.035	33.986	34.131	0	486	73	1.3303722	0.043029785	1.3303722	271.32602		8.775818	0.0012289	0.00061476	-0.0001363	NaN	7.5902	223	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20391	+		8934	12491	5184	5286							0.05362165388419271
HGVVQAGT	8	Unmodified	_HGVVQAGT_					0	0	0		ENST00000308020.5_1_11:490627-491155:+|nuORF	ENST00000308020.5_1_11:490627-491155:+|nuORF	ENST00000308020.5_1_11:490627-491155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.3998780682001	1	768.399878	767.392602	0.8013	0.00061572	-9.4284	-0.0072448	-8.6271	-0.0066291	768.3931428484872	31.789	0.19311	31.785	31.737	31.93	-0.0044174	537	58	1.2998781	0.03411436	1.2983587	265.0017	0	6.954773						215	9	3	NaN	NaN	NaN	0.82797	1	4248	4248		5.4659	1.0528	1	25748			8935	6434	5185	5287	7030	7030					-0.0003989951366065725
HGWAGTGK	8	Unmodified	_HGWAGTGK_					0	0	0		ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B	ENST00000486372.1_1_9:132565440-132566668:+|nuORF	ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.2037444429	2	407.203744	812.392936	1.0501	0.00042762	0.1056	4.3001E-05	1.1557	0.00047062	407.2040598063661	26.819	0.1211	26.819	26.77	26.891	0	1455	43	0.7413668	0.025977015	0.7413668	301.9793	0	10.581146						125	6	3	NaN	NaN	NaN	0.84692	1	4917	4917		1.4396	0	1	11057			8936	3045	5186	5288	7031	7031					-0.02076479793811359
HGWGPQLARY	10	Unmodified	_HGWGPQLARY_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8016142903001	2	592.801614	1183.58868	1.285	0.00076173	8.1769	0.0048473	9.4618	0.005609	592.8061558515028	27.639	0.048246	27.639	27.639	27.688	0	1200	79	0.89836043	0.04777533	0.89836043	364.01727	0	19.358643						141	3	2	NaN	NaN	NaN	0.67523	1	15966	15966		9.746	0.62279	1	17342			8937	5404	5187	5289	7032	7032					0.004224856602377258
HGWPIPVIQMY	11	Unmodified	_HGWPIPVIQMY_					0	0	0			REV__ENST00000589123.5_2_19:3467023-3467371:+|nuORF	REV__ENST00000589123.5_2_19:3467023-3467371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.8446331979501	2	670.844633	1339.67471	1.2788	0.00085791	-5.0381	-0.0033798	-3.7592	-0.0025219	670.8403097645983	27.253	0.16888	27.253	27.205	27.374	0	1095	58	0.9625867	0.034798086	0.9625867	389.5179	0	14.081268						238	8	3	NaN	NaN	NaN	0.61551	1	19406	19406		13.003	0.43313	1	31446	+		8938	12904	5188	5290	7033	7033					0.018463094507296773
HGWPIPVIQMY	11	Unmodified						0	0	0			REV__ENST00000589123.5_2_19:3467023-3467371:+|nuORF	REV__ENST00000589123.5_2_19:3467023-3467371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	670.844633	1339.67471	1.2788	0.00085791	-5.0381	-0.0033798	-3.7592	-0.0025219	670.8403097645983	27.253	0.16888	27.253	27.205	27.374	0	1095	58	0.9625867	0.034798086	0.9625867	389.5179		14.081268	-0.17585	0.0039323	0.0016756	NaN	13.003	238	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31446	+		8939	12904	5188	5290							0.018463094507296773
HGYDKDPVL	9	Unmodified	_HGYDKDPVL_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.26145628705	2	522.261456	1042.50836	1.5961	0.00083357	-2.0402	-0.0010655	-0.4441	-0.00023194	522.2601847090533	15.222	0.1922	15.222	15.174	15.366	0	1224	85	0.883646	0.051550567	0.883646	358.61273	0	20.920898						404	9	4	NaN	NaN	NaN	0.041983	1	10318	10318		50.315	15.876	1	72444			8940	3584	5189	5291	7034	7034					-0.011194204534831442
HGYDKDPVL	9	Unmodified	_HGYDKDPVL_					0	0	0		ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	ENSG00000147123|ENST00000377811|NDUFB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.26145628705	2	522.261456	1042.50836	1.56	0.00081474	-2.0347	-0.0010626	-0.47463	-0.00024788	522.2602626836077	15.268	0.23993	15.256	15.208	15.448	-0.012202	1224	130	0.883646	0.0792312	0.88212657	358.61273	0	32.154633						470	11	4	NaN	NaN	NaN	0.14787	1	10111	10111		28.896	10.926	1	76815			8941	3584	5189	5291	7035	7035					-0.011194204534831442
HHAFLQDLY	9	Unmodified	_HHAFLQDLY_					0	0	0		ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.8575741858	3	381.857574	1142.55089	1.5983	0.00061031	2.9097	0.0011111	4.508	0.0017214	381.85922543990284	22.549	0.096458	22.549	22.525	22.621	0	1461	40	0.7376554	0.024125457	0.7376554	448.5298	0	14.669434						78	5	2	NaN	NaN	NaN	0.56671	1	14543	14543		3.9281	0.34868	1	7326			8942	5056	5190	5292	7036	7036					-0.01468025325243616
HHAWITSFECR	11	Unmodified	_HHAWITSFECR_					0	0	0		ENST00000507004.1_1_5:43298999-43313499:-|nuORF;ENST00000325110.10_1_5:43299002-43313569:-|nuORF	ENST00000507004.1_1_5:43298999-43313499:-|nuORF	ENST00000507004.1_1_5:43298999-43313499:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.82222073415	2	693.822221	1385.62989	1.2016	0.00083373	-1.7769	-0.0012328	-0.57522	-0.0003991	693.8213068792747	32.514	0.14478	32.514	32.49	32.635	0	1104	67	0.9570911	0.040290296	0.9570911	387.16287	0	16.298248						127	7	3	NaN	NaN	NaN	0.77544	1	19936	19936		1.04	0.24016	1	10463			8943	6491	5191	5293	7037	7037					-0.047501213626219396
HHAWITSFECR	11	Unmodified						0	0	0		ENST00000507004.1_1_5:43298999-43313499:-|nuORF;ENST00000325110.10_1_5:43299002-43313569:-|nuORF	ENST00000507004.1_1_5:43298999-43313499:-|nuORF	ENST00000507004.1_1_5:43298999-43313499:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	693.822221	1385.62989	1.2017	0.00083375	-6.2005	-0.004302	-4.9988	-0.0034683	693.8186086370749	32.537	0.02422	32.534	32.51	32.534	-0.0031052	1092	40	0.9644182	0.023816884	0.96289873	390.12683		9.63443	0.010005	-0.0043483	0.0029038	NaN	1.04	45	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4319.1			8944	6491	5191	5293							-0.047501213626219396
HHEIEAKKM	9	Unmodified	_HHEIEAKKM_					0	0	0			REV__nc|ENSG00000163939|Q86U86-6|PBRM1	REV__nc|ENSG00000163939|Q86U86-6|PBRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.78985797325	2	561.789858	1121.56516	2.142	0.0012034	3.4174	0.0019199	5.5594	0.0031232	561.7912310668831	26.263	0.096531	26.263	26.215	26.312	0	1191	79	0.90387505	0.047801137	0.90387505	366.4851	0	19.38147						122	5	2	NaN	NaN	NaN	0.40649	1	13741	13741		13.463	3.7171	1	22867	+		8945	10306	5192	5294	7038	7038					0.009243038313798024
HHHGSSRHH	9	Unmodified	_HHHGSSRHH_					0	0	0		CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.4990320364	1	1091.49903	1090.49176	2.1265	0.0023211	2.9835	0.0032565	5.11	0.0055775	1092.5052302952975	30.294	0.096516	30.294	30.27	30.366	0	150	70	1.5299006	0.04071617	1.5299006	310.26755	0	8.257355						129	5	2	NaN	NaN	NaN	0.47587	1	12413	12413		10.605	1.643	1	12125			8946	77	5193	5295	7039	7039					-0.049870637762069236
HHHGSSRHH	9	Unmodified						0	0	0		CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	CATSPER1|p.R228S|1|0.29|ENSG00000175294|chr11:66025696-66025696|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1091.49903	1090.49176	0.96186	0.0010499	3.998	0.0043638	4.9598	0.0054137	1091.5040683418638	30.293	0.12062	30.287	30.214	30.335	-0.0064106	150	64	1.5299006	0.03717959	1.5283811	310.26755		7.5401306	-0.0036873	0.00046111	-0.00075972	NaN	10.605	160	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14022			8947	77	5193	5295							-0.049870637762069236
HHHLFNQE	8	Unmodified	_HHHLFNQE_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.4911526915	1	1061.49115	1060.48388	1.9073	0.0020246	5.5384	0.005879	7.4457	0.0079036	1061.4981451817923	34.493	0.14479	34.493	34.445	34.589	0	177	55	1.5139546	0.0319072	1.5139546	307.14224	0	6.4731445						190	7	3	NaN	NaN	NaN	0.78264	1	11107	11107		11.548	0.94349	1	14949			8948	5559	5194	5296	7040	7040					-0.04394635816333903
HHHQSSFWP	9	Unmodified	_HHHQSSFWP_					0	0	0			REV__ENST00000312352.11_1_12:48528578-48528769:+|nuORF	REV__ENST00000312352.11_1_12:48528578-48528769:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7624891298001	2	581.762489	1161.51043	1.962	0.0011414	-1.4651	-0.00085233	0.49691	0.00028909	581.7619343161798	19.084	0.11995	19.084	19.036	19.156	0	1209	67	0.892844	0.04046899	0.892844	361.8613	0	16.401703						103	6	2	NaN	NaN	NaN	0.62619	1	15193	15193		4.4131	0	1	9263.2	+		8949	11694	5195	5297	7041	7041					-0.06386946924999393
HHHQSSFWP	9	Unmodified						0	0	0			REV__ENST00000312352.11_1_12:48528578-48528769:+|nuORF	REV__ENST00000312352.11_1_12:48528578-48528769:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.762489	1161.51043	1.962	0.0011414	-1.4651	-0.00085233	0.49691	0.00028909	581.7619343161798	19.084	0.11995	19.084	19.036	19.156	0	1209	67	0.892844	0.04046899	0.892844	361.8613		16.401703	0	0	0	NaN	4.4131	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9263.2	+		8950	11694	5195	5297							-0.06386946924999393
HHHWPSEKCKS	11	Unmodified	_HHHWPSEKCKS_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|54|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|61|1|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|95|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|54|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|54|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.21565563599995	3	459.215656	1374.62514	1.3637	0.00062624	-9.724	-0.0044654	-8.3603	-0.0038392	459.21105002156315	14.86	0.1201	14.848	14.776	14.896	-0.011738	1419	28	0.76361835	0.01667869	0.7620989	463.3821	0	10.121033						52	6	2	NaN	NaN	NaN	0.74438	1	18912	18912		4.5433	2.8628	1	3502.4			8951	7852	5196	5298	7042	7042					-0.04719005505376117
HHLCLNSHW	9	Unmodified	_HHLCLNSHW_					0	0	0			REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.76671722795	2	573.766717	1145.51888	0.84678	0.00048585	-6.0516	-0.0034722	-5.2048	-0.0029863	573.7617512161644	33.48	0.12067	33.48	33.407	33.528	0	1239	85	0.87444305	0.051505983	0.87444305	354.46164	0	20.878296						210	6	4	NaN	NaN	NaN	0.62619	1	14630	14630		4.4131	0.84331	1	16630	+		8952	12582	5197	5299	7043	7043					-0.04805716280043271
HHLCLNSHW	9	Unmodified						0	0	0			REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.766717	1145.51888	0.84678	0.00048585	-6.0516	-0.0034722	-5.2048	-0.0029863	573.7617512161644	33.48	0.12067	33.48	33.407	33.528	0	1239	85	0.87444305	0.051505983	0.87444305	354.46164		20.878296	-0.058729	-0.0011631	-0.0010812	NaN	4.4131	210	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16630	+		8953	12582	5197	5299							-0.04805716280043271
HHLCLNSHW	9	Unmodified						0	0	0			REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	573.766717	1145.51888	0.49934	0.00028651	-3.9803	-0.0022838	-3.481	-0.0019973	574.2665099057278	33.599	0.21717	33.597	33.452	33.67	-0.0018501	1233	43	0.87812483	0.02576971	0.8766054	355.95404		10.445923	0.058729	0.0012137	0.0010812	NaN	4.4131	128	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8814.4	+		8954	12582	5197	5299							-0.04805716280043271
HHLIRFWA	8	Unmodified	_HHLIRFWA_					0	0	0		ENST00000497308.1_1_7:6452282-6456334:-|nuORF	ENST00000497308.1_1_7:6452282-6456334:-|nuORF	ENST00000497308.1_1_7:6452282-6456334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.5347658191	3	360.534766	1078.58247	2.452	0.00088402	-2.3328	-0.00084106	0.11917	4.2963E-05	360.5337878510761	17.21	0.09586	17.196	17.172	17.268	-0.013567	1503	34	0.711653	0.02044487	0.71013355	433.02444	0	12.440247						59	5	2	NaN	NaN	NaN	0.84692	1	11619	11619		0.79988	0.28384	1	4546.2			8955	7297	5198	5300	7044	7044					0.046320122193719726
HHLMPCDTL	9	Unmodified	_HHLMPCDTL_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7440618736	2	533.744062	1065.47357	0.87699	0.00046809	-10.769	-0.0057479	-9.8921	-0.0052798	533.7383729597441	30.559	0.072348	30.553	30.529	30.601	-0.0057564	1284	82	0.8468043	0.04977131	0.8452849	343.56464	0	20.193176						103	4	2	NaN	NaN	NaN	0.60063	1	11090	11090		5.4659	2.2542	1	6551.7			8956	6190	5199	5301	7045	7045					-0.05654702857441407
HHPCLLRR	8	Unmodified	_HHPCLLRR_					0	0	0			REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2876198455501	2	516.28762	1030.56069	0.70848	0.00036578	5.3882	0.0027819	6.0967	0.0031477	516.2910290204686	31.669	0.096512	31.664	31.64	31.737	-0.0044155	1290	55	0.84311575	0.033186257	0.8415963	342.21588	0	13.470123						93	5	3	NaN	NaN	NaN	0.83849	1	9605	9605		4.0537	0.085174	1	6362.7	+		8957	12888	5200	5302	7046	7046					0.04662884199160544
HHPCLLRR	8	Unmodified						0	0	0			REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.28762	1030.56069	1.2454	0.00064301	1.8789	0.00097003	3.1243	0.001613	516.2905013784156	31.67	0.072397	31.67	31.621	31.694	0	1293	52	0.84127116	0.031344235	0.84127116	341.4672		12.722443	0.0027533	-0.0021934	-0.00016257	NaN	4.0537	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4729	+		8958	12888	5200	5302							0.04662884199160544
HHPCLLRR	8	Unmodified						0	0	0			REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	REV__ENST00000586356.5_1_19:11411567-11411807:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.28762	1030.56069	0.70848	0.00036578	5.3882	0.0027819	6.0967	0.0031477	516.2910290204686	31.669	0.096512	31.664	31.64	31.737	-0.0044155	1290	55	0.84311575	0.033186257	0.8415963	342.21588		13.470123	-0.0027533	0.0014303	0.00016257	NaN	4.0537	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6362.7	+		8959	12888	5200	5302							0.04662884199160544
HHPREAVL	8	Unmodified	_HHPREAVL_					0	0	0		ENST00000368433.5_1_1:154962752-154963160:+|nuORF	ENST00000368433.5_1_1:154962752-154963160:+|nuORF	ENST00000368433.5_1_1:154962752-154963160:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5217245384	1	958.521725	957.514448	1.4464	0.0013864	-11.216	-0.010751	-9.77	-0.0093648	958.512421539473	28.846	0.048298	28.846	28.822	28.87	0	321	34	1.4286518	0.01960373	1.4286518	290.23657	0	3.9825745						34	3	2	NaN	NaN	NaN	0.76406	1	7277	7277		14.042	0.57854	1	3870.7			8960	6630	5201	5303	7047	7047					0.03399142568696334
HHRREDWNNWW	11	Unmodified	_HHRREDWNNWW_					0	0	0		ENST00000580900.5_2_9:21802683-21815463:+|nuORF	ENST00000580900.5_2_9:21802683-21815463:+|nuORF	ENST00000580900.5_2_9:21802683-21815463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.68826155420004	4	409.688262	1634.72394	1.6531	0.00067727	-5.4135	-0.0022178	-3.7604	-0.0015406	409.6867857935879	11.74	0.071984	11.74	11.716	11.788	0	1473	46	0.7302302	0.027855158	0.7302302	589.88965	0	22.50177						98	4	3	NaN	NaN	NaN	0.78047	1	20788	20788		0.15888	0.02198	1	7361			8961	7681	5202	5304	7048	7048					-0.06803266216093107
HHSRLWQEGEL	11	Unmodified	_HHSRLWQEGEL_					0	0	0		nc|ENSG00000140798|Q96J65-3|ABCC12	nc|ENSG00000140798|Q96J65-3|ABCC12	nc|ENSG00000140798|Q96J65-3|ABCC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.5653418635334	3	464.565342	1390.6742	2.1642	0.0010054	-6.4835	-0.003012	-4.3193	-0.0020066	464.5615444442351	18.698	0.071985	18.684	18.636	18.708	-0.014059	1392	22	0.780288	0.012958229	0.77876854	473.4433	0	7.862488						39	4	2	NaN	NaN	NaN	0.76803	1	19050	19050		1.6806	0	1	2277.1			8962	7949	5203	5305	7049	7049					-0.005513939447610028
HHTAINERKS	10	Unmodified	_HHTAINERKS_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.81271029285	2	596.81271	1191.61087	1.586	0.00094653	-9.4319	-0.0056291	-7.8459	-0.0046825	596.8060447905547	19.876	0.12027	19.876	19.876	19.997	0	1176	34	0.9130621	0.020202816	0.9130621	369.9458	0	8.185577						57	6	2	NaN	NaN	NaN	0.72369	1	16200	16200		6.4299	0.51015	1	4059	+		8963	11143	5204	5306	7050	7050					0.022726653379777417
HHTAINERKS	10	Unmodified						0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.81271	1191.61087	1.586	0.00094653	-9.4319	-0.0056291	-7.8459	-0.0046825	596.8060447905547	19.876	0.12027	19.876	19.876	19.997	0	1176	34	0.9130621	0.020202816	0.9130621	369.9458		8.185577	0	0	0	NaN	6.4299	57	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4059	+		8964	11143	5204	5306							0.022726653379777417
HICCVFAY	8	Unmodified	_HICCVFAY_					0	0	0		ENST00000490188.1_1_2:219524870-219524942:+|nuORF;ENST00000392109.5_1_2:219524870-219525668:+|nuORF	ENST00000490188.1_1_2:219524870-219524942:+|nuORF	ENST00000490188.1_1_2:219524870-219524942:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4164561098	1	955.416456	954.40918	2.8237	0.0026978	1.4183	0.001355	4.2419	0.0040528	955.4181796940024	25.925	0.072376	25.914	25.89	25.962	-0.0116	324	37	1.42687	0.021382451	1.4253505	289.8879	0	4.3441467						57	4	2	NaN	NaN	NaN	0.84651	1	7037	7037		1.6704	0.2308	1	4032.6			8965	6753	5205	5307	7051	7051					-0.0698485794358703
HIDHEIETL	9	Unmodified	_HIDHEIETL_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7774704920001	2	553.77747	1105.54039	1.446	0.00080076	1.0053	0.00055669	2.4513	0.0013574	553.7786049206727	16.997	0.14394	16.997	16.925	17.069	0	1221	61	0.885486	0.036821842	0.885486	359.0923	0	14.932404						150	7	2	NaN	NaN	NaN	0.41766	1	13082	13082		13.003	6.7526	1	18050			8966	5640	5206	5308	7052	7052					-0.008160527703239495
HIDHEIETL	9	Unmodified						0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.77747	1105.54039	1.6362	0.0009061	0.16051	8.8885E-05	1.7967	0.00099498	553.7780750221201	17.114	0.16806	17.1	17.004	17.172	-0.013569	1245	61	0.87076044	0.036813855	0.869241	353.1206		14.929169	0.051548	-0.00050923	-0.0081225	NaN	13.003	176	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18782			8967	5640	5206	5308							-0.008160527703239495
HIDTILHVL	9	Unmodified	_HIDTILHVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8111163441	2	530.811116	1059.60768	1.4803	0.00078574	0.86221	0.00045767	2.3425	0.0012434	531.3130431622127	24.43	0.14467	24.43	24.406	24.55	0	1233	106	0.87812483	0.0643999	0.87812483	356.2971	0	26.130096						264	7	3	NaN	NaN	NaN	0.018156	1	11086	11086		74.332	47.6	1	53764			8968	5976	5207	5309	7053	7053					0.0802602223127451
HIEESEHVL	9	Unmodified	_HIEESEHVL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7696454599001	2	546.769645	1091.52474	1.2753	0.0006973	-1.643	-0.00089833	-0.36767	-0.00020103	546.7692000143375	14.789	0.16815	14.789	14.765	14.933	0	1272	61	0.854179	0.03685367	0.854179	346.45108	0	14.947662						225	8	3	NaN	NaN	NaN	0.0072287	1	12462	12462		98.041	61.455	1	40820			8969	4511	5208	5310	7054	7054					-0.017363392873676275
HIFSLFFF	8	Unmodified	_HIFSLFFF_					0	0	0			REV__ENST00000309137.12_1_16:57219763-57219925:-|nuORF	REV__ENST00000309137.12_1_16:57219763-57219925:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2789207587001	2	529.278921	1056.54329	1.5089	0.00079864	-8.2598	-0.0043718	-6.7509	-0.0035731	529.2743856756603	15.101	0.21625	15.101	15.029	15.246	0	1269	34	0.8560222	0.020272791	0.8560222	347.34195	0	8.225952						149	10	3	NaN	NaN	NaN	0.77489	1	10942	10942		12.588	1.9829	1	12291	+		8970	11681	5209	5311	7055	7055					0.017278671451322225
HIFSLFFF	8	Unmodified						0	0	0			REV__ENST00000309137.12_1_16:57219763-57219925:-|nuORF	REV__ENST00000309137.12_1_16:57219763-57219925:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.278921	1056.54329	1.5089	0.00079864	-8.2598	-0.0043718	-6.7509	-0.0035731	529.2743856756603	15.101	0.21625	15.101	15.029	15.246	0	1269	34	0.8560222	0.020272791	0.8560222	347.34195		8.225952	0	0	0	NaN	12.588	149	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12291	+		8971	11681	5209	5311							0.017278671451322225
HIFYDFII	8	Unmodified	_HIFYDFII_					0	0	0		FAM50B|p.T249I|1|0.14|ENSG00000145945|chr6:3850557-3850557|C/T|missense_variant	FAM50B|p.T249I|1|0.14|ENSG00000145945|chr6:3850557-3850557|C/T|missense_variant	FAM50B|p.T249I|1|0.14|ENSG00000145945|chr6:3850557-3850557|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2816604129001	2	534.28166	1066.54877	1.945	0.0010392	-3.7399	-0.0019982	-1.7949	-0.000959	534.2800268694873	24.791	0.2172	24.791	24.743	24.96	0	1281	73	0.84864825	0.044233978	0.84864825	344.30832	0	17.94635						403	10	4	NaN	NaN	NaN	0.77489	1	11410	11410		12.588	1.0394	1	80305			8972	7797	5210	5312	7056	7056					0.01815545936960916
HIGDMDDEWT	10	Unmodified	_HIGDMDDEWT_					0	0	0			REV__ENSG00000143318|ENST00000368078|CASQ1	REV__ENSG00000143318|ENST00000368078|CASQ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.8292439595	3	406.829244	1217.4659	1.4055	0.00057178	-0.97958	-0.00039852	0.42587	0.00017326	407.163028593326	26.891	0.072392	26.88	26.856	26.928	-0.010643	1467	43	0.7339432	0.02598828	0.7324238	445.94556	0	15.790527						77	4	3	NaN	NaN	NaN	0.77514	1	16240	16240		1.6985	0.52167	1	4666.2	+		8973	9863	5211	5313	7057	7057					-0.13413183644024684
HIGVAIKR	8	Unmodified	_HIGVAIKR_					0	0	0			REV__ENSG00000072954|ENST00000187762|TMEM38A	REV__ENSG00000072954|ENST00000187762|TMEM38A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.28761145805	2	447.287611	892.56067	-0.69944	-0.00031285	-9.0171	-0.0040332	-9.7165	-0.0043461	447.28344838205317	56.059	0.047989	56.058	56.034	56.082	-0.00056458	1233	40	0.87812483	0.023930311	0.8766054	357.15137	0	9.732941						91	3	3	NaN	NaN	NaN	0.84651	1	5847	5847		1.6704	0	1	21457	+		8974	8590	5212	5314	7058	7058					0.11009207470783622
HIGVAIKR	8	Unmodified						0	0	0			REV__ENSG00000072954|ENST00000187762|TMEM38A	REV__ENSG00000072954|ENST00000187762|TMEM38A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	447.287611	892.56067	1.1644	0.00052083	-11.928	-0.0053352	-10.763	-0.0048143	447.2821605797301	56.061	0.07206	56.061	56.037	56.109	0	1236	40	0.876284	0.023932874	0.876284	356.40268		9.733978	0.0013401	-0.0017563	-0.00016068	NaN	1.6704	100	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17850	+		8975	8590	5212	5314							0.11009207470783622
HIGVAIKR	8	Unmodified						0	0	0			REV__ENSG00000072954|ENST00000187762|TMEM38A	REV__ENSG00000072954|ENST00000187762|TMEM38A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	447.287611	892.56067	-0.69944	-0.00031285	-9.0171	-0.0040332	-9.7165	-0.0043461	447.28344838205317	56.059	0.047989	56.058	56.034	56.082	-0.00056458	1233	40	0.87812483	0.023930311	0.8766054	357.15137		9.732941	-0.0013401	0.00084758	0.00016068	NaN	1.6704	91	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21457	+		8976	8590	5212	5314							0.11009207470783622
HIHGEKKE	8	Unmodified	_HIHGEKKE_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.26179063805	2	489.261791	976.509028	0.80461	0.00039366	-9.0859	-0.0044454	-8.2813	-0.0040517	489.2572215028227	38.42	0.19221	38.42	38.348	38.54	0	1341	34	0.8117308	0.020327687	0.8117308	329.71725	0	8.2569275						84	9	2	NaN	NaN	NaN	0.82212	1	7793	7793		6.2502	0.15988	1	5647.1			8977	1605	5213	5315	7059	7059					0.01983418986230845
HIHNTSNLLH	10	Unmodified	_HIHNTSNLLH_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.30980346315	2	593.309803	1184.60505	1.5535	0.00092173	-5.4144	-0.0032124	-3.8609	-0.0022907	593.306605456235	17.141	0.16801	17.141	17.117	17.285	0	1140	49	0.93509084	0.029355824	0.93509084	378.89685	0	11.894897						183	8	3	NaN	NaN	NaN	0.41164	1	16001	16001		23.118	2.6689	1	21435	+		8978	10380	5214	5316	7060	7060					0.02013566826326496
HIHNTSNLLH	10	Unmodified						0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.309803	1184.60505	1.5535	0.00092173	-5.4144	-0.0032124	-3.8609	-0.0022907	593.306605456235	17.141	0.16801	17.141	17.117	17.285	0	1140	49	0.93509084	0.029355824	0.93509084	378.89685		11.894897	-0.075434	-0.00023795	0.00075972	NaN	23.118	183	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21435	+		8979	10380	5214	5316							0.02013566826326496
HIHNTSNLLH	10	Unmodified						0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.309803	1184.60505	1.3115	0.00077813	-5.0137	-0.0029747	-3.7022	-0.0021965	593.307353259699	17.306	0.26395	17.292	17.196	17.46	-0.013569	1140	55	0.93509084	0.033021748	0.9335714	378.89685		13.380341	0.075434	0.00023754	-0.00075972	NaN	23.118	245	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23642	+		8980	10380	5214	5316							0.02013566826326496
HIIDDALVRL	10	Unmodified	_HIIDDALVRL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8404050998001	2	582.840405	1163.66626	1.8602	0.0010842	-1.5249	-0.00088875	0.33536	0.00019546	582.8393853567886	24.261	0.31355	24.261	24.237	24.55	0	1149	67	0.92958635	0.04038602	0.92958635	376.74442	0	16.367737						392	14	5	NaN	NaN	NaN	0.00016917	1	15280	15280		104.89	41.16	1	163870			8981	1940	5215	5317	7061	7061					0.09097078805757519
HIIDDALVRL	10	Unmodified	_HIIDDALVRL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8404050998001	2	582.840405	1163.66626	1.775	0.0010346	-0.30413	-0.00017726	1.4709	0.00085729	582.8406199288087	24.405	0.41016	24.393	24.296	24.706	-0.012747	1164	58	0.9204082	0.034888268	0.91888875	373.0247	0	14.139557						551	18	5	NaN	NaN	NaN	3.0843E-05	1	14754	14754		114.98	59.392	1	178570			8982	1940	5215	5317	7062	7062					0.09097078805757519
HIKNVARTPK	10	Unmodified	_HIKNVARTPK_					0	0	0			REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.57176815656663	3	388.571768	1162.69348	1.2857	0.0004996	1.5725	0.00061103	2.8582	0.0011106	388.57248163482177	39.066	0.1448	39.071	39.047	39.192	0.0046806	1434	88	0.75435036	0.053730845	0.7528309	458.58655	0	32.664154						292	7	3	NaN	NaN	NaN	0.76892	1	14724	14724		1.3696	0	1	31922	+		8983	8964	5216	5318	7063	7063					0.1186360713677459
HILAKGCK	8	Unmodified	_HILAKGCK_					0	0	0			REV__ZNF225|p.F269L|1|0.1|ENSG00000256294|chr19:44131421-44131421|C/A|missense_variant	REV__ZNF225|p.F269L|1|0.1|ENSG00000256294|chr19:44131421-44131421|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.25492273365006	2	435.254923	868.495293	0.75843	0.00033011	-9.8945	-0.0043066	-9.1361	-0.0039765	435.2502337122352	27.639	0.072374	27.629	27.629	27.702	-0.009552	1353	91	0.8043377	0.055466294	0.80281824	327.2779	0	22.568726						165	4	2	NaN	NaN	NaN	0.84207	1	5505	5505		3.5732	0.41988	1	21271	+		8984	13653	5217	5319	7064	7064					0.055784699534456195
HILCIMYP	8	Unmodified	_HILCIMYP_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.2509914487	2	495.250991	988.48743	1.0688	0.00052935	-1.3878	-0.00068732	-0.31897	-0.00015797	495.25060699756807	28.097	0.048244	28.088	28.064	28.112	-0.0089798	1305	43	0.83389086	0.02584225	0.8323714	338.6614	0	10.495087						54	3	2	NaN	NaN	NaN	0.84651	1	7991	7991		1.6704	0	1	5251.7	+		8985	10486	5218	5320	7065	7065					-0.007274253583432255
HILSAPCII	9	Unmodified	_HILSAPCII_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5440994644001	1	966.544099	965.536823	1.0336	0.00099898	6.0703	0.0058672	7.1039	0.0068662	966.5495510196871	29.449	0.12064	29.442	29.417	29.538	-0.0070667	234	76	1.4802408	0.044416666	1.4787214	300.68158	0	9.022369						149	6	3	NaN	NaN	NaN	0.3389	1	7358	7358		16.417	1.2413	1	14681	+		8986	9232	5219	5321	7066	7066					0.05267605922108487
HINEGETAM	9	Unmodified	_HINEGETAM_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.22147384680005	2	501.221474	1000.42839	2.0913	0.0010482	-2.7193	-0.001363	-0.62799	-0.00031476	501.22024185424954	13.565	0.14407	13.565	13.517	13.661	0	1368	55	0.7950918	0.03328693	0.7950918	322.85138	0	13.516357						150	7	2	NaN	NaN	NaN	0.42817	1	8594	8594		12.57	1.0213	1	10736			8987	4833	5220	5322	7067	7067					-0.07180230118967756
HINEGETAM	9	Unmodified	_HINEGETAM_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.22147384680005	2	501.221474	1000.42839	1.2594	0.00063125	0.11026	5.5263E-05	1.3697	0.00068651	501.2216462605211	13.565	0.09594	13.555	13.507	13.603	-0.010098	1371	55	0.79324204	0.033283353	0.7917226	322.10025	0	13.514893						102	5	2	NaN	NaN	NaN	0.10363	1	8421	8421		35.296	3.621	1	8330.6			8988	4833	5220	5322	7068	7068					-0.07180230118967756
HINEKNFN	8	Unmodified	_HINEKNFN_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.251422917	2	508.251423	1014.48829	2.4394	0.0012398	-11.336	-0.0057615	-8.8966	-0.0045217	508.2460453254254	13.709	0.26421	13.709	13.661	13.925	0	1278	58	0.85049206	0.03503555	0.85049206	345.28204	0	14.223724						302	12	3	NaN	NaN	NaN	0.7718	1	9146	9146		13.003	0.95414	1	41961	+		8989	8321	5221	5323	7069	7069					-0.018371713934357103
HINHDDPSL	9	Unmodified	_HINHDDPSL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2463375391001	2	524.246338	1046.47812	1.1579	0.00060701	-1.1678	-0.0006122	-0.0099001	-5.1901E-06	524.2458922546973	13.036	0.26421	13.036	12.988	13.252	0	1287	76	0.8449601	0.046129405	0.8449601	342.89578	0	18.71991						303	12	3	NaN	NaN	NaN	0.31471	1	10472	10472		17.97	11.719	1	43682			8990	979	5222	5324	7070	7070					-0.04325779118653372
HINHDDPSL	9	Unmodified	_HINHDDPSL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2463375391001	2	524.246338	1046.47812	1.0823	0.00056738	-0.072402	-3.7956E-05	1.0099	0.00052942	524.2462270978845	13.11	0.23958	13.1	13.028	13.268	-0.00947	1284	64	0.8468043	0.038736105	0.8452849	343.64417	0	15.719635						253	11	3	NaN	NaN	NaN	0.12104	1	10262	10262		32.778	9.4436	1	39323			8991	979	5222	5324	7071	7071					-0.04325779118653372
HISKKWGFTKF	11	Unmodified	_HISKKWGFTKF_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2591901251667	3	460.25919	1377.75574	1.4378	0.00066174	-3.4429	-0.0015846	-2.0052	-0.0009229	460.2580625959007	17.597	0.071926	17.597	17.573	17.645	0	1395	34	0.7784366	0.020365238	0.7784366	472.3635	0	12.357788						55	4	2	NaN	NaN	NaN	0.20822	1	19875	19875		29.563	21.209	1	4351.3			8992	3594	5223	5325	7072	7072					0.08197333485122726
HIVLANPP	8	Unmodified	_HIVLANPP_					0	0	0			REV__ENSG00000230549|ENST00000529559|USP17L1	REV__ENSG00000230549|ENST00000529559|USP17L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.75307014895003	2	430.75307	859.491587	0.63963	0.00027552	-1.1291	-0.00048638	-0.48952	-0.00021086	430.7524671472051	20.911	0.12042	20.897	20.849	20.969	-0.014086	1410	43	0.76917666	0.025934815	0.7676573	313.02213	0	10.554352						126	6	2	NaN	NaN	NaN	0.81807	1	5391	5391		6.794	1.8843	1	14792	+		8993	11311	5224	5326	7073	7073					0.05622123451234984
HIVLANPP	8	Unmodified						0	0	0			REV__ENSG00000230549|ENST00000529559|USP17L1	REV__ENSG00000230549|ENST00000529559|USP17L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	430.75307	859.491587	1.0382	0.00044719	-2.9513	-0.0012713	-1.9131	-0.00082409	430.7518096475657	20.814	0.096386	20.814	20.79	20.887	0	1413	43	0.7673241	0.025937617	0.7673241	312.26822		10.555511	-0.041256	-0.0009008	-0.00016657	NaN	6.794	112	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14110	+		8994	11311	5224	5326							0.05622123451234984
HIVLANPP	8	Unmodified						0	0	0			REV__ENSG00000230549|ENST00000529559|USP17L1	REV__ENSG00000230549|ENST00000529559|USP17L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	430.75307	859.491587	0.63963	0.00027552	-1.1291	-0.00048638	-0.48952	-0.00021086	430.7524671472051	20.911	0.12042	20.897	20.849	20.969	-0.014086	1410	43	0.76917666	0.025934815	0.7676573	313.02213		10.554352	0.041256	0.00066899	0.00016657	NaN	6.794	126	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14792	+		8995	11311	5224	5326							0.05622123451234984
HIVSIEVQR	9	Unmodified	_HIVSIEVQR_					0	0	0		ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8116476603501	2	540.811648	1079.60874	1.6982	0.00091838	-3.8838	-0.0021004	-2.1856	-0.001182	540.8097201672363	15.894	0.095866	15.894	15.87	15.966	0	1233	55	0.87812483	0.033143222	0.87812483	356.2124	0	13.44455						106	5	3	NaN	NaN	NaN	0.31471	1	11976	11976		17.97	4.2326	1	10754			8996	5288	5225	5327	7074	7074					0.07212236600184951
HIVSIEVQR	9	Unmodified	_HIVSIEVQR_					0	0	0		ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.8116476603501	2	540.811648	1079.60874	2.0539	0.0011108	-1.181	-0.00063867	0.87293	0.00047209	540.81058493549	16.011	0.21564	15.999	15.927	16.142	-0.012611	1236	55	0.876284	0.033132493	0.8747646	355.46567	0	13.440216						146	10	2	NaN	NaN	NaN	0.03533	1	11666	11666		53.14	22.53	1	13772			8997	5288	5225	5327	7075	7075					0.07212236600184951
HIWDLSFVNG	10	Unmodified	_HIWDLSFVNG_					0	0	0			REV__nc|ENSG00000166526|P17036-2|ZNF3	REV__nc|ENSG00000166526|P17036-2|ZNF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2958304206501	2	594.29583	1186.57711	1.7686	0.0010511	8.1784	0.0048604	9.947	0.0059115	594.3008383979387	18.101	0.071926	18.101	18.053	18.125	0	1203	55	0.8965218	0.03309667	0.8965218	363.26175	0	13.410461						88	4	2	NaN	NaN	NaN	0.68669	1	16056	16056		8.962	2.0988	1	11368	+		8998	13164	5226	5328	7076	7076					-0.008717561537650909
HIYTYIAI	8	Unmodified	_HIYTYIAI_					0	0	0			REV__ENST00000257724.7_1_7:114658065-114658206:+|nuORF	REV__ENST00000257724.7_1_7:114658065-114658206:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.2738353807999	2	497.273835	992.533118	1.6772	0.00083405	-6.5513	-0.0032578	-4.874	-0.0024237	497.2707090431154	15.268	0.096071	15.256	15.208	15.304	-0.012202	1308	31	0.83204526	0.018456757	0.8305259	337.893	0	7.49527						64	5	2	NaN	NaN	NaN	0.84207	1	8155	8155		3.5732	0.0034402	1	3924.2	+		8999	11532	5227	5329	7077	7077					0.036552594198724364
HKEKQPVEL	9	Unmodified	_HKEKQPVEL_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.3114804848501	2	554.31148	1106.60841	1.0545	0.0005845	-7.2045	-0.0039936	-6.1501	-0.0034091	554.3073503898495	27.518	0.072407	27.508	27.484	27.557	-0.009552	1224	64	0.883646	0.038627446	0.88212657	358.3419	0	15.664429						107	4	2	NaN	NaN	NaN	0.53317	1	12769	12769		8.2448	0.65722	1	16447	+		9000	8623	5228	5330	7078	7078					0.05936816880330298
HKESTIEAL	9	Unmodified	_HKESTIEAL_					0	0	0			REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.541850858	1	1027.54185	1026.53457	2.2021	0.0022628	-11.13	-0.011436	-8.9277	-0.0091736	1027.5304035175834	25.443	0.07239	25.443	25.419	25.491	0	168	49	1.5192716	0.028355956	1.5192716	308.35187	0	5.755127						133	4	3	NaN	NaN	NaN	0.13602	1	9630	9630		30.61	3.3139	1	14134	+		9001	9640	5229	5331	7079	7079					0.022368487180074226
HKESTIEAL	9	Unmodified						0	0	0			REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1027.54185	1026.53457	2.2021	0.0022628	-11.13	-0.011436	-8.9277	-0.0091736	1027.5304035175834	25.443	0.07239	25.443	25.419	25.491	0	168	49	1.5192716	0.028355956	1.5192716	308.35187		5.755127	0.0061619	0.00013741	0.00075972	NaN	30.61	133	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14134	+		9002	9640	5229	5331							0.022368487180074226
HKESTIEAL	9	Unmodified						0	0	0			REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	REV__ENST00000393321.2_3_2:109102933-109106471:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1027.54185	1026.53457	1.9207	0.0019736	-11.637	-0.011957	-9.7163	-0.0099839	1027.5318514034905	25.443	0.096512	25.431	25.407	25.503	-0.012011	168	55	1.5192716	0.031900406	1.5177522	308.35187		6.474518	-0.0061619	-0.00038375	-0.00075972	NaN	30.61	140	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14337	+		9003	9640	5229	5331							0.022368487180074226
HKGHQCLS	8	Unmodified	_HKGHQCLS_					0	0	0		ENST00000589022.1_1_19:11464267-11465550:+|nuORF;nc|ENSG00000183401|P0C7I6-7|CCDC159;ENSG00000183401|ENST00000458408|CCDC159	ENST00000589022.1_1_19:11464267-11465550:+|nuORF	ENST00000589022.1_1_19:11464267-11465550:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.22161123254995	2	455.221611	908.42867	0.78852	0.00035895	0.9439	0.00042968	1.7324	0.00078863	455.221999227387	31.355	0.072361	31.35	31.326	31.398	-0.0050716	1455	40	0.7413668	0.024117589	0.73984736	301.44922	0	9.806519						81	4	3	NaN	NaN	NaN	0.82797	1	6087	6087		5.4659	0.55612	1	8224.7			9004	5305	5230	5332	7080	7080					-0.0292076560847363
HKGSAAAP	8	Unmodified	_HKGSAAAP_					0	0	0		ENST00000495746.5_1_1:119575954-119683267:-|nuORF;nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2	ENST00000495746.5_1_1:119575954-119683267:-|nuORF	ENST00000495746.5_1_1:119575954-119683267:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3893133818999	1	738.389313	737.382037	1.2825	0.00094698	-10.39	-0.0076716	-9.1072	-0.0067246	738.3815483646675	28.218	0.14482	28.209	28.161	28.305	-0.0089779	1206	40	0.894683	0.023904443	0.89316356	182.5263	0	4.8768005						112	7	2	NaN	NaN	NaN	0.84692	1	3804	3804		1.4396	0.36755	1	14284			9005	2114	5231	5333	7081	7081					0.002841178318817583
HKHIVYLYGVC	11	Unmodified	_HKHIVYLYGVC_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3500827166001	2	666.350083	1330.68561	1.5261	0.0010169	0.69491	0.00046305	2.221	0.00148	667.3524324924483	27.157	0.072374	27.157	27.109	27.181	0	1098	52	0.960755	0.031158626	0.960755	388.8035	0	12.609436						59	4	3	NaN	NaN	NaN	0.77039	1	19268	19268		1.9246	0	1	3426.2			9006	4134	5232	5334	7082	7082					0.03349711825012491
HKILTLKAC	9	Unmodified	_HKILTLKAC_					0	0	0			REV__ENSG00000181666|ENST00000392153|ZNF875	REV__ENSG00000181666|ENST00000392153|ZNF875	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.6128477316001	1	1026.61285	1025.60557	0.95815	0.00098365	-3.8539	-0.0039565	-2.8957	-0.0029728	1026.6077984347692	33.551	0.096558	33.549	33.501	33.597	-0.0018463	81	55	1.5705823	0.031805873	1.5690628	318.7697	0	6.455414						84	5	2	NaN	NaN	NaN	0.61413	1	9419	9419		4.9097	0.49665	1	6286.8	+		9007	10848	5233	5335	7083	7083					0.09379270221825209
HKKKVKRP	8	Unmodified	_HKKKVKRP_					0	0	0			REV__nc|ENSG00000153132|O14967-2|CLGN	REV__nc|ENSG00000153132|O14967-2|CLGN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.6788938824002	1	1020.67889	1019.67162	1.4516	0.0014816	-0.16233	-0.00016568	1.2892	0.0013159	1020.6785608141166	40.198	0.14417	40.204	40.156	40.3	0.0060501	288	55	1.4482387	0.03202927	1.4467193	293.9612	0	6.501251						143	7	2	NaN	NaN	NaN	0.84887	1	9179	9179		0.32989	0.32989	1	13322	+		9008	10068	5234	5336	7084	7084					0.16256847178885891
HKKTSADKYMT	11	Unmodified	_HKKTSADKYMT_					0	0	0		nc|ENSG00000089682|Q96IZ5-3|RBM41;ENSG00000089682|ENST00000685964|RBM41	nc|ENSG00000089682|Q96IZ5-3|RBM41	nc|ENSG00000089682|Q96IZ5-3|RBM41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3320869287	2	655.332087	1308.64962	1.2849	0.00084204	-9.8752	-0.0064715	-8.5903	-0.0056295	655.3250644197262	37.407	0.072067	37.41	37.362	37.434	0.0028229	1122	28	0.9460945	0.016497552	0.9445751	382.93692	0	6.6774597						49	4	2	NaN	NaN	NaN	0.73057	1	18074	18074		5.4499	1.5218	1	3513.8			9009	1041	5235	5337	7085	7085					0.007642098574933698
HKPGAGAT	8	Unmodified	_HKPGAGAT_					0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3893133819	1	738.389313	737.382037	1.7233	0.0012724	-3.1214	-0.0023048	-1.3981	-0.0010324	738.3860641962348	21.946	0.072292	21.946	21.922	21.994	0	588	34	1.2693287	0.019786358	1.2693287	258.9586	0	4.0366516						64	4	2	NaN	NaN	NaN	0.84692	1	3879	3879		1.4396	0	1	4136.5			9010	6190	5236	5338	7086	7086					0.00284117831893127
HKPGAGAT	8	Unmodified						0	0	0		ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	ENSG00000275832|ENST00000622683|ARHGAP23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	738.389313	737.382037	2.049	0.001513	-6.1614	-0.0045495	-4.1124	-0.0030365	738.3847042533594	21.946	0.072298	21.932	21.908	21.98	-0.013895	588	34	1.2693287	0.019786358	1.2678093	258.9586		4.0366516	-0.0070739	-0.0012305	-0.00075972	NaN	1.4396	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3699.8			9011	6190	5236	5338							0.00284117831893127
HKRVPCGK	8	Unmodified	_HKRVPCGK_					0	0	0		ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.76344625750005	2	462.763446	923.51234	0.56067	0.00025946	-0.14316	-6.625E-05	0.4175	0.00019321	462.763066839847	34.492	0.096481	34.491	34.467	34.563	-0.0006485	1269	79	0.8560222	0.047889054	0.85450274	347.9849	0	19.46756						174	5	2	NaN	NaN	NaN	0.84887	1	6355	6355		0.32989	0	1	17822			9012	2544	5237	5339	7087	7087					0.04752390559247033
HLACPLSC	8	Unmodified	_HLACPLSC_					0	0	0			REV__nc|ENSG00000160271|Q12967-4|RALGDS	REV__nc|ENSG00000160271|Q12967-4|RALGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.19621622399995	2	422.196216	842.37788	1.0979	0.00046351	4.0223	0.0016982	5.1202	0.0021617	422.19781506884067	30.776	0.12061	30.77	30.746	30.866	-0.0057545	1389	34	0.7821392	0.020362973	0.78061974	318.39886	0	8.28952						84	6	2	NaN	NaN	NaN	0.84692	1	5165	5165		1.4396	0	1	6259	+		9013	13150	5238	5340	7088	7088					-0.04961430977687087
HLADQEPALF	10	Unmodified	_HLADQEPALF_					0	0	0		ENST00000358901.10_1_9:35072401-35072665:-|nuORF	ENST00000358901.10_1_9:35072401-35072665:-|nuORF	ENST00000358901.10_1_9:35072401-35072665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.78783821305	2	570.787838	1139.56112	1.8297	0.0010444	7.668	0.0043768	9.4977	0.0054212	570.7918515591083	16.23	0.26402	16.23	16.086	16.35	0	1176	40	0.9130621	0.02388376	0.9130621	370.13907	0	9.682068						239	12	3	NaN	NaN	NaN	0.44412	1	14430	14430		21.771	2.6527	1	22549			9014	6588	5239	5341	7089	7089					-0.0030746239067411807
HLADQEPALF	10	Unmodified						0	0	0		ENST00000358901.10_1_9:35072401-35072665:-|nuORF	ENST00000358901.10_1_9:35072401-35072665:-|nuORF	ENST00000358901.10_1_9:35072401-35072665:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.787838	1139.56112	1.8614	0.0010625	8.3408	0.0047608	10.202	0.0058233	571.2949602604862	16.347	0.071949	16.334	16.286	16.358	-0.012995	1179	40	0.9112251	0.02388376	0.90970564	369.39438		9.682068	0.051997	0.00046161	-0.0016782	NaN	21.771	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7629.9			9015	6588	5239	5341							-0.0030746239067411807
HLALSFVLV	9	Unmodified	_HLALSFVLV_					0	0	0			REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.8053026847	2	499.805303	997.596052	1.6367	0.00081805	-1.4255	-0.00071247	0.21123	0.00010557	499.80457111258295	26.77	0.1694	26.77	26.746	26.915	0	1272	49	0.854179	0.029492497	0.854179	346.8574	0	11.976044						223	8	3	NaN	NaN	NaN	0.13477	1	8500	8500		30.791	6.9407	1	94041	+		9016	9872	5240	5342	7090	7090					0.09715825207933904
HLALSFVLV	9	Unmodified						0	0	0			REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.805303	997.596052	1.6367	0.00081805	-1.4255	-0.00071247	0.21123	0.00010557	499.80457111258295	26.77	0.1694	26.77	26.746	26.915	0	1272	49	0.854179	0.029492497	0.854179	346.8574		11.976044	-0.018611	0.00049961	0.00075972	NaN	30.791	223	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94041	+		9017	9872	5240	5342							0.09715825207933904
HLCHRLNP	8	Unmodified	_HLCHRLNP_					0	0	0		FNDC3A|p.D626H|1|0.05|ENSG00000102531|chr13:49188565-49188565|G/C|missense_variant	FNDC3A|p.D626H|1|0.05|ENSG00000102531|chr13:49188565-49188565|G/C|missense_variant	FNDC3A|p.D626H|1|0.05|ENSG00000102531|chr13:49188565-49188565|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2585280551	2	495.258528	988.502503	2.1379	0.0010588	1.893	0.00093751	4.0309	0.0019963	495.2576483874173	17.333	0.023933	17.333	17.309	17.333	0	1314	55	0.8283535	0.03324014	0.8283535	336.4125	0	13.499542						45	2	2	NaN	NaN	NaN	0.83849	1	8163	8163		4.0537	0.90034	1	2543.4			9018	7802	5241	5343	7091	7091					0.00779202553860614
HLCKWFPHGA	10	Unmodified	_HLCKWFPHGA_					0	0	0			REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	REV__ENST00000544283.5_1_2:91823926-91845846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19916583996667	3	399.199166	1194.57567	1.5866	0.00063336	7.379	0.0029457	8.9655	0.003579	399.20173854334377	17.429	0.16782	17.429	17.405	17.573	0	1494	64	0.7172283	0.03900993	0.7172283	435.88293	0	23.707611						259	8	3	NaN	NaN	NaN	0.66268	1	16292	16292		5.4499	0	1	41163	+		9019	12708	5242	5344	7092	7092					-0.013836687235198042
HLCQLDSPM	9	Unmodified	_HLCQLDSPM_					0	0	0		ENST00000568395.1_1_16:2721560-2721671:-|nuORF	ENST00000568395.1_1_16:2721560-2721671:-|nuORF	ENST00000568395.1_1_16:2721560-2721671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.4648628654	1	1043.46486	1042.45759	1.6877	0.001761	2.9041	0.0030304	4.5918	0.0047914	1043.4671983648166	38.297	0.28846	38.301	38.228	38.517	0.0034256	174	70	1.5157272	0.040768147	1.5142077	307.57013	0	8.272614						504	13	3	NaN	NaN	NaN	0.31737	1	10097	10097		17.799	2.6236	1	110110			9020	7638	5243	5345	7093	7093					-0.06194409094337061
HLDFEQLW	8	Unmodified	_HLDFEQLW_					0	0	0		ENST00000337451.7_1_15:23005397-23005541:-|nuORF	ENST00000337451.7_1_15:23005397-23005541:-|nuORF	ENST00000337451.7_1_15:23005397-23005541:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5207214854	1	1087.52072	1086.51345	1.3807	0.0015015	-5.4742	-0.0059533	-4.0935	-0.0044518	1087.513750356141	32.949	0.072392	32.949	32.925	32.997	0	954	94	1.0484532	0.05650139	1.0484532	212.63861	0	11.459152						88	4	2	NaN	NaN	NaN	0.84512	1	12236	12236		2.4615	0.53688	1	5381.9			9021	6529	5244	5346	7094	7094					-0.026351165908636176
HLDILAQIA	9	Unmodified	_HLDILAQIA_					0	0	0			REV__ENSG00000117569|ENST00000674951|PTBP2	REV__ENSG00000117569|ENST00000674951|PTBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.29001676124994	2	497.290017	992.565481	1.5066	0.00074921	-0.48241	-0.0002399	1.0242	0.00050931	497.29013956522925	26.722	0.097029	26.722	26.698	26.795	0	1197	49	0.9001988	0.029416084	0.9001988	365.56992	0	11.945831						117	5	3	NaN	NaN	NaN	0.66196	1	8328	8328		2.4615	0	1	14750	+		9022	9248	5245	5347	7095	7095					0.06890046822888962
HLETLGPLE	9	Unmodified	_HLETLGPLE_					0	0	0			REV__ENST00000473637.6_1_17:80559802-80560249:+|nuORF	REV__ENST00000473637.6_1_17:80559802-80560249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.7716568326	2	504.771657	1007.52876	1.4317	0.00072267	-0.3666	-0.00018505	1.0651	0.00053762	504.7719516757981	23.079	0.072191	23.065	23.041	23.114	-0.013294	1197	40	0.9001988	0.023899257	0.8986794	365.4957	0	9.703522						111	4	3	NaN	NaN	NaN	0.66196	1	8717	8717		2.4615	0	1	16801	+		9023	12339	5246	5348	7096	7096					0.02529750206326753
HLFGSYHIV	9	Unmodified	_HLFGSYHIV_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.19066475863326	3	358.190665	1071.55016	1.753	0.00062789	0.004755	1.7032E-06	1.7577	0.00062959	358.190973767447	11.91	0.096056	11.902	11.83	11.926	-0.0081854	1479	55	0.72651637	0.03343892	0.7249969	442.10495	0	20.34848						86	5	2	NaN	NaN	NaN	0.60063	1	11331	11331		2.8895	0.29002	1	7694.6	+		9024	10789	5247	5349	7097	7097					0.01725180025687223
HLFVMMLI	8	Unmodified	_HLFVMMLI_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2770092339501	2	502.277009	1002.53947	1.3354	0.00067075	-2.0224	-0.0010158	-0.68694	-0.00034504	502.27652451060214	20.164	0.12041	20.15	20.102	20.222	-0.014143	1335	85	0.8154261	0.0516845	0.81390667	331.09875	0	20.986176						194	6	3	NaN	NaN	NaN	0.77734	1	8526	8526		12.26	2.6481	1	17873	+		9025	9730	5248	5350	7098	7098					0.03829738055424059
HLFVMMLI	8	Unmodified						0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.277009	1002.53947	1.6375	0.00082248	-0.67725	-0.00034017	0.96025	0.00048231	502.2767937869102	20.117	0.14416	20.117	20.093	20.237	0	1329	91	0.81912065	0.05537027	0.81912065	332.5989		22.482758	-0.016787	0.00081046	0.002607	NaN	12.26	189	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20219	+		9026	9730	5248	5350							0.03829738055424059
HLFVMMLI	8	Unmodified						0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.277009	1002.53947	1.3354	0.00067075	-2.0224	-0.0010158	-0.68694	-0.00034504	502.27652451060214	20.164	0.12041	20.15	20.102	20.222	-0.014143	1335	85	0.8154261	0.0516845	0.81390667	331.09875		20.986176	0.016787	-0.00054077	-0.002607	NaN	12.26	194	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17873	+		9027	9730	5248	5350							0.03829738055424059
HLFYTPYM	8	Unmodified	_HLFYTPYM_					0	0	0			REV__ENSG00000166402|ENST00000299506|TUB	REV__ENSG00000166402|ENST00000299506|TUB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2520456937001	2	536.252046	1070.48954	1.6497	0.00088465	0.20364	0.0001092	1.8533	0.00099385	536.2530814600178	29.015	0.16894	29.015	28.967	29.136	0	1278	64	0.85049206	0.038723588	0.85049206	345.04013	0	15.709961						188	8	3	NaN	NaN	NaN	0.82332	1	11570	11570		6.0903	0.62448	1	15510	+		9028	10431	5249	5351	7099	7099					-0.04288673348878547
HLGGGGGGGGG	11	Unmodified	_HLGGGGGGGGG_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.3539905081003	1	782.353991	781.346714	1.1335	0.00088681	0.90245	0.00070603	2.036	0.0015928	782.354157051757	30.994	0.1207	30.994	30.946	31.066	0	1218	37	0.8873258	0.022078753	0.8873258	180.8393	0	4.49971						82	6	2	NaN	NaN	NaN	0.78138	1	4503	4503		0	0	1	6389.7	+		9029	10027	5250	5352	7100	7100					-0.052705446958839275
HLGGGGGGGGG	11	Unmodified						0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	782.353991	781.346714	1.1335	0.00088681	0.90245	0.00070603	2.036	0.0015928	782.354157051757	30.994	0.1207	30.994	30.946	31.066	0	1218	37	0.8873258	0.022078753	0.8873258	180.8393		4.49971	0.015127	0.00049208	0.00075972	NaN	0	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6389.7	+		9030	10027	5250	5352							-0.052705446958839275
HLGGGGGGGGG	11	Unmodified						0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	782.353991	781.346714	1.6024	0.0012536	-0.39158	-0.00030635	1.2108	0.00094729	782.3539138254417	30.969	0.14485	30.964	30.94	31.084	-0.0050716	1218	43	0.8873258	0.025755763	0.8858064	180.8393		5.2490997	-0.015127	-0.00052031	-0.00075972	NaN	0	93	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7138.3	+		9031	10027	5250	5352							-0.052705446958839275
HLGGKEYTL	9	Unmodified	_HLGGKEYTL_					0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.27182400810005	2	509.271824	1016.5291	1.9984	0.0010177	-1.4798	-0.00075361	0.51864	0.00026413	509.27139402559357	14.141	0.16811	14.141	14.093	14.261	0	1263	70	0.85970795	0.042402327	0.85970795	349.0141	0	17.21399						251	8	3	NaN	NaN	NaN	0.13602	1	9237	9237		30.61	2.8213	1	34416			9032	3452	5251	5353	7101	7101					0.021491699262014663
HLGGKEYTL	9	Unmodified						0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.271824	1016.5291	1.0939	0.00055711	-0.27168	-0.00013836	0.82226	0.00041876	509.27197398209046	14.237	0.21556	14.225	14.154	14.369	-0.011218	1263	46	0.85970795	0.027641773	0.8581885	349.01407		11.22168	0.042143	0.00058154	-0.00075972	NaN	30.61	190	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32137			9033	3452	5251	5353							0.021491699262014663
HLGHPETLSS	10	Unmodified	_HLGHPETLSS_					0	0	0			REV__ENST00000576819.1_1_16:3534641-3534923:+|nuORF	REV__ENST00000576819.1_1_16:3534641-3534923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.84896724580005	3	359.848967	1076.52507	2.0316	0.00073108	6.5096	0.0023425	8.5413	0.0030736	359.8513707016521	25.732	0.14475	25.732	25.684	25.829	0	1548	34	0.6837494	0.020480454	0.6837494	416.0557	0	12.462158						104	7	3	NaN	NaN	NaN	0.67523	1	11824	11824		5.0169	0	1	9608.8	+		9034	12852	5252	5354	7102	7102					-0.010129195675062874
HLGSEERL	8	Unmodified	_HLGSEERL_					0	0	0		SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|19|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|22|2|sense;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|6|1|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|6|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|22|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|6|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|7|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|35|3|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|31|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|4|1|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|24|2|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|27|3|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|14|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|5|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|31|3|sense;chr1:152114111-152144990|142|23.89|0.08|8.2|-|0|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|4;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|25|3|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|4|1|sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|14|2|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|16|2|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|16|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|5|1|sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|21|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|35|3|sense;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|28|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|4|1|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|23|3|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|4|1|sense;SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|5|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|36|3|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|18|2|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|13|2|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|20|2|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|7|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|14|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|36|3|sense;chr9:116820783-116840693|208|10.41|0.01|9.96|-|0|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840693,116841394|ASTN2,None|4;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|35|3|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|16|2|sense;chr1:206064304-206097733|274|14.92|0.63|4.56|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064304|None,RHEX|6;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|3|1|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|9|1|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|38|3|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|3|1|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|4|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|18|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|4|1|sense;SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|31|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|39|3|sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|16|2|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|35|3|sense;SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|5|1|sense;SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|8|1|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|17|2|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|41|3|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|29|3|sense;chr12:14354815-14423909|112|15.09|0.0|20.53|+|2|TE_info:SVA_C,SVA_C_dup319,SVA,Retroposon,donor,+,14354081,14354815|None,ATF7IP|4;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|3|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|5|1|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|3|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|18|2|sense;chr1:206064097-206097733|206|10.51|0.19|5.76|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064097|None,RHEX|6;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|28|3|sense;chr2:38750194-38756111|187|65.66|0.09|9.55|-|1|TE_info:SVA_D,SVA_D_dup166,SVA,Retroposon,donor,-,38756111,38756756|SRSF7,None|5;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|34|3|sense;chr1:152114111-152144990|142|23.89|0.08|8.2|-|1|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|4;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|40|3|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|23|2|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|11|2|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|16|2|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|16|2|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|20|2|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|31|3|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|37|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|26|2|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|21|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|4|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|43|3|sense;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|4|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|25|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|36|3|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|15|2|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|4|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|4|1|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|4|1|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|4|1|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|4|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|31|3|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|27|3|sense;SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|27|3|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|4|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|35|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|4|1|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|4|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|17|2|sense;chr9:116820783-116840653|226|10.77|0.01|9.93|-|1|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840653,116841394|ASTN2,None|4;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|36|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|18|2|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|7|1|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|24|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|37|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|16|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|21|2|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|12|2|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|4|1|sense;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|4|1|sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|4|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|37|3|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|4|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|19|2|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|6|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|13|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|30|3|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|41|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|24|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|19|2|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|33|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|29|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|16|2|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|34|3|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|4|1|sense;chr20:8644500-8646102|134|11.7|0.0|12.94|+|2|TE_info:SVA_D,SVA_D_dup1365,SVA,Retroposon,donor,+,8643757,8644500|None,PLCB1|5;chr18:49491584-49578178|122|488.25|0.0|25.54|-|2|TE_info:SVA_F,SVA_F_dup867,SVA,Retroposon,donor,-,49578178,49579001|RPL17-C18orf32,None|5;chr15:39807258-39894532|137|21.23|0.0|15.12|-|0|TE_info:SVA_F,SVA_F_dup763,SVA,Retroposon,donor,-,39894532,39895275|GPR176,None|4;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|18|2|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|23|2|sense;SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|11|2|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|6|1|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|38|3|sense;chr20:8644500-8646102|134|11.7|0.0|12.94|+|0|TE_info:SVA_D,SVA_D_dup1365,SVA,Retroposon,donor,+,8643757,8644500|None,PLCB1|6;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|19|2|sense;chr9:116820783-116840653|226|10.77|0.01|9.93|-|2|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840653,116841394|ASTN2,None|4;chr12:121993889-121999716|119|12.75|0.02|9.21|+|2|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993889|None,CFAP251|5;chr9:116820783-116840693|208|10.41|0.01|9.96|-|2|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840693,116841394|ASTN2,None|4;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|14|2|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|4|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|31|3|sense;chr12:121993709-121999716|467|38.79|0.37|6.71|+|2|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993709|None,CFAP251|5;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|6|1|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|43|3|sense;chr11:65239440-65241990|241|14.54|0.11|6.99|+|0|TE_info:SVA_F,SVA_F_dup641,SVA,Retroposon,donor,+,65238595,65239440|None,SLC22A20P|6;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|21|2|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|6|1|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|34|3|sense;chr9:116820783-116840613|327|19.44|0.05|8.75|-|1|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840613,116841394|ASTN2,None|4;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|16|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|17|2|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|18|2|sense;chr18:49491584-49578178|122|488.25|0.0|25.54|-|1|TE_info:SVA_F,SVA_F_dup867,SVA,Retroposon,donor,-,49578178,49579001|RPL17-C18orf32,None|4;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|22|3|sense;chr5:76812310-76832690|378|16.73|0.13|7.01|+|2|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812310|None,F2RL1|4;chr12:121993889-121999716|119|12.75|0.02|9.21|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993889|None,CFAP251|4;SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|22|3|sense;chr5:76812387-76832690|376|11.08|0.11|6.64|+|0|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812387|None,F2RL1|4;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|37|3|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|34|3|sense;chr1:206064304-206097733|274|14.92|0.63|4.56|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064304|None,RHEX|4;SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|4|1|sense;chr9:116820783-116840613|327|19.44|0.05|8.75|-|0|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840613,116841394|ASTN2,None|4;chr11:65239440-65241990|241|14.54|0.11|6.99|+|2|TE_info:SVA_F,SVA_F_dup641,SVA,Retroposon,donor,+,65238595,65239440|None,SLC22A20P|4;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|16|2|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|4|1|sense;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|15|2|sense;chr1:206064097-206097733|206|10.51|0.19|5.76|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064097|None,RHEX|4;chr12:121993709-121999716|467|38.79|0.37|6.71|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993709|None,CFAP251|4;chr4:15790918-15816511|304|27.04|0.09|8.21|+|2|TE_info:SVA_D,SVA_D_dup355,SVA,Retroposon,donor,+,15790204,15790918|None,CD38|7	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|16|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.74597339835003	2	470.745973	939.477394	1.0239	0.00048198	-3.0794	-0.0014496	-2.0556	-0.00096765	470.7441383387209	12.34	0.095964	12.34	12.268	12.364	0	1302	31	0.8357362	0.01845473	0.8357362	339.65375	0	7.500244						66	5	2	NaN	NaN	NaN	0.72013	1	6811	6811		17.799	0	1	5327.2			9035	13696	5253	5355	7103	7103					0.005234262322915129
HLGYPWLFL	9	Unmodified	_HLGYPWLFL_					0	0	0		ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.31075220335	2	573.310752	1144.60695	0.60265	0.00034551	3.5686	0.0020459	4.1712	0.0023914	573.3130468523582	33.237	0.16892	33.235	33.162	33.331	-0.0024757	1194	37	0.902037	0.02205491	0.9005176	365.65045	0	8.940186						149	8	3	NaN	NaN	NaN	0.48931	1	14135	14135		10.052	0	1	13419			9036	3835	5254	5356	7104	7104					0.040432275822240626
HLIQFQDRE	9	Unmodified	_HLIQFQDRE_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.87188333486665	3	395.871883	1184.59382	1.8892	0.0007479	7.6342	0.0030222	9.5234	0.0037701	395.87519275575033	13.805	0.12011	13.805	13.781	13.901	0	1458	28	0.7395112	0.016702175	0.7395112	449.46817	0	10.151459						70	6	2	NaN	NaN	NaN	0.61413	1	16002	16002		2.5994	0	1	5088.4			9037	4727	5255	5357	7105	7105					0.008907447321689688
HLKATKDED	9	Unmodified	_HLKATKDED_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.84885579546665	3	352.848856	1055.52474	1.6774	0.00059187	-6.7867	-0.0023947	-5.1093	-0.0018028	352.84646746707955	14.213	0.11977	14.201	14.177	14.297	-0.011218	1464	43	0.73579943	0.025993943	0.73428	447.8401	0	15.821045						96	6	2	NaN	NaN	NaN	0.56671	1	10656	10656		3.9281	0	1	12012	+		9038	10746	5256	5358	7106	7106					-0.0008033928738768736
HLKPAAAA	8	Unmodified	_HLKPAAAA_					0	0	0		ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	ENSG00000116783|ENST00000326637|TNNI3K	ENSG00000116783|ENST00000326637|TNNI3K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.73213774159996	2	389.732138	777.449723	1.7266	0.0006729	-7.7631	-0.0030255	-6.0365	-0.0023526	389.7290957096378	53.779	0.1927	53.779	53.731	53.924	0	1395	58	0.7784366	0.035183847	0.7784366	317.31516	0	14.342041						270	9	4	NaN	NaN	NaN	0.84876	1	4462	4462		0.39566	0	1	146330			9039	2111	5257	5359	7107	7107					0.052095677626994075
HLLALGAL	8	Unmodified	_HLLALGAL_					0	0	0		nc|ENSG00000063322|Q9NX70-2|MED29	nc|ENSG00000063322|Q9NX70-2|MED29	nc|ENSG00000063322|Q9NX70-2|MED29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.5087002361003	1	807.5087	806.501424	2.015	0.0016271	-0.5299	-0.0004279	1.4851	0.0011992	807.5109774414514	56.924	0.096104	56.924	56.924	57.021	0	429	49	1.3643885	0.028619409	1.3643885	277.91614	0	5.829529						132	5	3	NaN	NaN	NaN	0.84876	1	4849	4849		0.39566	0	1	13010			9040	7905	5258	5360	7108	7108					0.09043311456628089
HLLAWLEA	8	Unmodified	_HLLAWLEA_					0	0	0			REV__INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	REV__INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.76617752420003	2	476.766178	951.517802	1.1506	0.00054856	6.2162	0.0029637	7.3668	0.0035123	476.7691545468055	12.388	0.11993	12.388	12.364	12.484	0	1317	34	0.8265074	0.020307899	0.8265074	335.8417	0	8.251892						80	6	2	NaN	NaN	NaN	0.79379	1	7132	7132		10.052	0.92837	1	6408.9	+		9041	9457	5259	5361	7109	7109					0.04010392622706149
HLLCRRCHLRR	11	Unmodified	_HLLCRRCHLRR_					0	0	0		ENSG00000142279|ENST00000590071|WTIP	ENSG00000142279|ENST00000590071|WTIP	ENSG00000142279|ENST00000590071|WTIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.2750742733666	3	488.275074	1461.80339	1.2678	0.00061904	3.5941	0.0017549	4.8619	0.0023739	488.276586490037	30.269	0.096485	30.263	30.214	30.311	-0.0064106	1302	37	0.8357362	0.022143304	0.8342168	506.8441	0	13.429108						62	5	2	NaN	NaN	NaN	0.76975	1	19455	19455		2.0359	0.80691	1	5441.2			9042	3368	5260	5362	7110	7110					0.09096385932662088
HLLEDYEM	8	Unmodified	_HLLEDYEM_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2340499058	2	525.23405	1048.45355	1.4188	0.00074518	0.22215	0.00011668	1.6409	0.00086186	525.2332710584068	21.802	0.096231	21.788	21.74	21.836	-0.013895	1275	46	0.85233563	0.027644694	0.8508162	345.88037	0	11.218323						124	5	3	NaN	NaN	NaN	0.80071	1	10338	10338		9.1232	3.9343	1	7698.4			9043	4298	5261	5363	7111	7111					-0.06874175316420406
HLLEDYEM	8	Unmodified						0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.23405	1048.45355	1.5946	0.00083755	-1.233	-0.0006476	0.36164	0.00018994	525.2333938800168	21.778	0.072231	21.778	21.754	21.826	0	1278	43	0.85049206	0.025808692	0.85049206	345.13226		10.473267	-0.0050263	-0.00061235	-0.00016207	NaN	9.1232	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4646.6			9044	4298	5261	5363							-0.06874175316420406
HLLKLGIG	8	Unmodified	_HLLKLGIG_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.7790879342	2	425.779088	849.543623	1.7473	0.00074397	-10.492	-0.0044672	-8.7444	-0.0037232	425.77451676375506	17.429	0.16789	17.429	17.381	17.549	0	1365	52	0.7969414	0.03144282	0.7969414	324.3809	0	12.798218						208	8	3	NaN	NaN	NaN	0.84651	1	5380	5380		1.6704	0.2308	1	39812	+		9045	11983	5262	5364	7112	7112					0.11283286864988895
HLLSLEQLH	9	Unmodified	_HLLSLEQLH_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3061981417001	2	545.306198	1088.59784	1.6236	0.00088533	-8.3527	-0.0045548	-6.7292	-0.0036695	545.3009590110769	16.997	0.16801	16.997	16.949	17.117	0	1221	67	0.885486	0.040499628	0.885486	359.16113	0	16.427002						129	6	2	NaN	NaN	NaN	0.55027	1	12337	12337		7.5404	0.67717	1	10933	+		9046	10609	5263	5365	7113	7113					0.057088342259021374
HLLSLEQLH	9	Unmodified						0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.306198	1088.59784	1.6236	0.00088533	-8.3527	-0.0045548	-6.7292	-0.0036695	545.3009590110769	16.997	0.16801	16.997	16.949	17.117	0	1221	67	0.885486	0.040499628	0.885486	359.16113		16.427002	0	0	0	NaN	7.5404	129	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10933	+		9047	10609	5263	5365							0.057088342259021374
HLPHSGVLP	9	Unmodified	_HLPHSGVLP_					0	0	0			REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF	REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5312265922001	1	956.531227	955.52395	1.8158	0.0017369	-2.2583	-0.0021601	-0.44246	-0.00042323	956.5290486549333	30.004	0.072397	30.004	29.98	30.053	0	309	40	1.435777	0.023150682	1.435777	291.69266	0	4.703308						61	4	2	NaN	NaN	NaN	0.55027	1	7231	7231		7.5404	1.45	1	5142.4	+		9048	12941	5264	5366	7114	7114					0.0444091085423679
HLPISEFAL	9	Unmodified	_HLPISEFAL_					0	0	0		EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENSG00000167880|ENST00000301607|EVPL	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7845672426	2	513.784567	1025.55458	1.7098	0.00087849	0.26828	0.00013784	1.9781	0.0010163	513.7852648183322	27.253	0.12062	27.253	27.205	27.326	0	1263	55	0.85970795	0.033168256	0.85970795	348.97305	0	13.463684						197	6	4	NaN	NaN	NaN	0.11467	1	9606	9606		33.698	0	1	26171			9049	4573	5265	5367	7115	7115					0.04282644448608153
HLPISEFAL	9	Unmodified						0	0	0		EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENSG00000167880|ENST00000301607|EVPL	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.784567	1025.55458	0.92565	0.00047559	-3.7338	-0.0019184	-2.8082	-0.0014428	513.7823516568282	27.301	0.1931	27.291	27.218	27.411	-0.010126	1263	100	0.85970795	0.060857892	0.8581885	348.97308		24.70346	0.018693	-0.0028104	-0.00075972	NaN	33.698	269	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39969			9050	4573	5265	5367							0.04282644448608153
HLPSACGG	8	Unmodified	_HLPSACGG_					0	0	0		nc|ENSG00000185100|Q8N142-2|ADSS1	nc|ENSG00000185100|Q8N142-2|ADSS1	nc|ENSG00000185100|Q8N142-2|ADSS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3348349704002	1	741.334835	740.327559	2.1515	0.001595	0.78501	0.00058196	2.9365	0.002177	741.3352932541942	29.666	0.048275	29.659	29.635	29.683	-0.0070648	621	37	1.2495319	0.021609306	1.2480124	254.90126	0	4.408249						44	3	2	NaN	NaN	NaN	0.84727	1	3834	3834		1.2418	0	1	2796.3			9051	8001	5266	5368	7116	7116					-0.05299217311164739
HLQGSARWR	9	Unmodified	_HLQGSARWR_					0	0	0			REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7994059523501	2	555.799406	1109.58426	1.1846	0.0006584	6.4733	0.0035979	7.6579	0.0042563	555.8028087043307	12.534	0.096128	12.525	12.477	12.573	-0.0088425	1236	40	0.876284	0.023932874	0.8747646	355.34464	0	9.705109						113	5	3	NaN	NaN	NaN	0.34922	1	12895	12895		15.822	4.6516	1	10038	+		9052	12566	5267	5369	7117	7117					0.03385021237318142
HLQGSARWR	9	Unmodified						0	0	0			REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.799406	1109.58426	0.89552	0.00049773	9.2971	0.0051673	10.193	0.005665	555.8047561480527	12.46	0.095979	12.46	12.436	12.532	0	1236	34	0.876284	0.020250916	0.876284	355.3446		8.212006	-0.032529	0.001491	0.00075972	NaN	15.822	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11265	+		9053	12566	5267	5369							0.03385021237318142
HLQGSARWR	9	Unmodified						0	0	0			REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	REV__ENST00000513574.1_1_4:156588948-156618002:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.799406	1109.58426	1.1846	0.0006584	6.4733	0.0035979	7.6579	0.0042563	555.8028087043307	12.534	0.096128	12.525	12.477	12.573	-0.0088425	1236	40	0.876284	0.023932874	0.8747646	355.34464		9.705109	0.032529	-0.0016479	-0.00075972	NaN	15.822	113	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10038	+		9054	12566	5267	5369							0.03385021237318142
HLQQRDQRYEG	11	Unmodified	_HLQQRDQRYEG_					0	0	0		ENST00000439174.6_1_17:63049827-63052604:-|nuORF	ENST00000439174.6_1_17:63049827-63052604:-|nuORF	ENST00000439174.6_1_17:63049827-63052604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3501882214001	2	715.350188	1428.68582	2.9738	0.0021273	1.5595	0.0011156	4.5333	0.0032429	715.85318470774	29.811	0.048243	29.803	29.755	29.803	-0.0070648	1056	22	0.9863805	0.012800992	0.9848611	398.8922	0	5.1767273						21	3	2	NaN	NaN	NaN	0.77466	1	19306	19306		1.1768	0	1	1115.3			9055	7000	5268	5370	7118	7118					-0.01137196921422401
HLRLLVARLR	10	Unmodified	_HLRLLVARLR_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8218697252	1	1246.82187	1245.81459	1.5917	0.0019846	3.136	0.0039101	4.7278	0.0058947	1246.8251697703683	40.078	0.096252	40.084	40.06	40.156	0.0060463	63	49	1.5811787	0.028250933	1.5796592	320.1667	0	5.7204285						98	5	2	NaN	NaN	NaN	0.77884	1	16927	16927		0.79988	0	1	7175.9	+		9056	9630	5269	5371	7119	7119					0.2015185457012194
HLRLLVARLR	10	Unmodified						0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1246.82187	1245.81459	1.5917	0.0019846	3.136	0.0039101	4.7278	0.0058947	1246.8251697703683	40.078	0.096252	40.084	40.06	40.156	0.0060463	63	49	1.5811787	0.028250933	1.5796592	320.1667		5.7204285	-0.03398	0.00048508	0.00012308	NaN	0.79988	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7175.9	+		9057	9630	5269	5371							0.2015185457012194
HLRQLQQLK	9	Unmodified	_HLRQLQQLK_					0	0	0		PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant;nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant	PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.5717681565667	3	388.571768	1162.69348	0.55743	0.0002166	1.9108	0.0007425	2.4683	0.0009591	388.5720958785494	39.791	0.04826	39.791	39.767	39.815	0	1434	91	0.75435036	0.055580616	0.75435036	458.58655	0	33.788666						102	3	2	NaN	NaN	NaN	0.66196	1	15249	15249		1.1768	0	1	10338			9058	2184	5270	5372	7120	7120					0.11863607136797327
HLRQLQQLK	9	Unmodified						0	0	0		PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant;nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant	PMFBP1|p.K89N|1|0.15|ENSG00000118557|chr16:72154358-72154358|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	388.571768	1162.69348	1.1911	0.00046285	1.278	0.00049659	2.4691	0.00095944	388.5722737903613	39.765	0.12058	39.77	39.77	39.89	0.0053368	1434	79	0.75435036	0.048180282	0.7528309	458.58655		29.289856	-0.01041	-0.00031936	-0.00075972	NaN	1.1768	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13020			9059	2184	5270	5372							0.11863607136797327
HLRQVAFTQK	10	Unmodified	_HLRQVAFTQK_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.90340636393336	3	409.903406	1226.68839	1.3936	0.00057125	2.4575	0.0010073	3.8511	0.0015786	409.9045785037456	21.657	0.14441	21.643	21.571	21.715	-0.013897	1458	31	0.7395112	0.018557012	0.73799175	449.29086	0	11.2743225						92	7	2	NaN	NaN	NaN	0.61382	1	16468	16468		13.949	5.0072	1	9188			9060	6125	5271	5373	7121	7121					0.08411303274169768
HLRRFEEK	8	Unmodified	_HLRRFEEK_					0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.20871837046667	3	372.208718	1113.60433	2.0341	0.00075712	-11.114	-0.0041367	-9.0798	-0.0033796	372.2041016055925	15.34	0.095882	15.328	15.28	15.376	-0.012202	1509	31	0.70793515	0.018593311	0.7064157	430.5917	0	11.309113						60	5	2	NaN	NaN	NaN	0.82797	1	13056	13056		3.5698	0	1	5149.3	+		9061	11170	5272	5374	7122	7122					0.052067721772800724
HLRRFEEK	8	Unmodified						0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	372.208718	1113.60433	1.5178	0.00056493	-10.773	-0.0040097	-9.2549	-0.0034448	372.20437599782724	15.222	0.096076	15.222	15.198	15.294	0	1509	37	0.70793515	0.022311985	0.70793515	430.5917		13.570953	-0.053174	9.8367E-05	0.00075972	NaN	3.5698	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7028.6	+		9062	11170	5272	5374							0.052067721772800724
HLRRFEEK	8	Unmodified						0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	372.208718	1113.60433	2.0341	0.00075712	-11.114	-0.0041367	-9.0798	-0.0033796	372.2041016055925	15.34	0.095882	15.328	15.28	15.376	-0.012202	1509	31	0.70793515	0.018593311	0.7064157	430.5917		11.309113	0.053174	-0.00028258	-0.00075972	NaN	3.5698	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5149.3	+		9063	11170	5272	5374							0.052067721772800724
HLSPEEISL	9	Unmodified	_HLSPEEISL_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7691141436501	2	512.769114	1023.52368	2.1619	0.0011086	-3.2366	-0.0016596	-1.0747	-0.00055107	512.7677114108137	22.742	0.14469	22.742	22.694	22.838	0	1272	94	0.854179	0.057188094	0.854179	346.73785	0	23.214447						265	7	3	NaN	NaN	NaN	0.043119	1	9502	9502		49.833	2.6971	1	37642			9064	5593	5273	5375	7123	7123					0.01285446343717922
HLSPEEISL	9	Unmodified	_HLSPEEISL_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7691141436501	2	512.769114	1023.52368	1.1743	0.00060215	-1.9381	-0.00099379	-0.76376	-0.00039163	512.7682922915947	22.766	0.12043	22.752	22.728	22.848	-0.01354	1272	91	0.854179	0.05534631	0.8526596	346.73785	0	22.466797						278	6	3	NaN	NaN	NaN	0.043119	1	9316	9316		49.833	2.6971	1	39434			9065	5593	5273	5375	7124	7124					0.01285446343717922
HLTLDMAIL	9	Unmodified	_HLTLDMAIL_					0	0	0			REV__ENST00000542506.5_1_11:61582544-61582673:-|nuORF	REV__ENST00000542506.5_1_11:61582544-61582673:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7862526518	2	513.786253	1025.55795	0.92565	0.00047559	-7.0142	-0.0036038	-6.0885	-0.0031282	513.7823516568282	27.301	0.1931	27.291	27.218	27.411	-0.010126	1263	100	0.85970795	0.060857892	0.8581885	348.97308	0	24.70346						269	9	2	NaN	NaN	NaN	0.12945	1	9415	9415		31.561	9.4347	1	39969	+		9066	12702	5274	5376	7125	7125					0.04619571230955444
HLTWTLSILC	10	Unmodified	_HLTWTLSILC_					0	0	0		ENST00000458289.2_1_4:81001192-81001915:+|nuORF	ENST00000458289.2_1_4:81001192-81001915:+|nuORF	ENST00000458289.2_1_4:81001192-81001915:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.21448155316676	3	396.214482	1185.62162	1.4446	0.00057239	6.8596	0.0027179	8.3042	0.0032902	396.21715465851804	16.422	0.071922	16.422	16.398	16.47	0	1488	46	0.7209441	0.027867317	0.7209441	438.1789	0	16.937286						63	4	2	NaN	NaN	NaN	0.53991	1	16037	16037		13.949	0	1	6276.5			9067	7065	5275	5377	7126	7126					0.036229316680874035
HLWTNYTT	8	Unmodified	_HLWTNYTT_					0	0	0		ENST00000473875.5_1_1:244724068-244773670:+|nuORF;nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.4894213569999	1	1035.48942	1034.48214	2.022	0.0020937	6.2385	0.0064599	8.2605	0.0085537	1035.4932523713321	26.288	0.096544	26.288	26.288	26.384	0	225	94	1.4855686	0.055018306	1.4855686	301.4807	0	11.165375						143	5	3	NaN	NaN	NaN	0.78967	1	9960	9960		10.605	3.7418	1	13447			9068	5151	5276	5378	7127	7127					-0.03371689624964347
HLWTNYTT	8	Unmodified	_HLWTNYTT_					0	0	0		ENST00000473875.5_1_1:244724068-244773670:+|nuORF;nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.4894213569999	1	1035.48942	1034.48214	1.6289	0.0016867	3.1934	0.0033067	4.8223	0.0049934	1035.4927813328993	26.287	0.096493	26.276	26.276	26.373	-0.011137	222	61	1.4873441	0.035512567	1.4858247	301.84106	0	7.206909						119	5	2	NaN	NaN	NaN	0.78967	1	9752	9752		10.605	0	1	14066			9069	5151	5276	5378	7128	7128					-0.03371689624964347
HLYNGYIL	8	Unmodified	_HLYNGYIL_					0	0	0			REV__ENSG00000151790|ENST00000536354|TDO2	REV__ENSG00000151790|ENST00000536354|TDO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.76363483525	2	496.763635	991.512717	1.1906	0.00059143	-1.8948	-0.00094124	-0.70418	-0.00034981	496.76252956358627	20.357	0.1204	20.343	20.271	20.391	-0.014141	1455	61	0.7413668	0.03712207	0.73984736	301.07275	0	15.07547						108	6	2	NaN	NaN	NaN	0.77489	1	8105	8105		12.588	0.53918	1	9319.9	+		9070	10036	5277	5379	7129	7129					0.01662088760087954
HLYREQIP	8	Unmodified	_HLYREQIP_					0	0	0		ENST00000602616.6_1_15:31042681-31060126:+|nuORF	ENST00000602616.6_1_15:31042681-31060126:+|nuORF	ENST00000602616.6_1_15:31042681-31060126:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2852657343501	2	528.285266	1054.55598	0.97456	0.00051484	-5.09	-0.002689	-4.1154	-0.0021741	528.7847737886854	14.932	0.14417	14.92	14.872	15.016	-0.011737	1302	43	0.8357362	0.025831044	0.8342168	339.1189	0	10.481537						132	7	3	NaN	NaN	NaN	0.77891	1	10618	10618		12.049	2.3027	1	7785.5			9071	7772	5278	5380	7130	7130					0.0308827853737057
HLYRWAAP	8	Unmodified	_HLYRWAAP_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.2694187049	2	507.269419	1012.52428	1.3827	0.00070141	-0.81181	-0.00041181	0.5709	0.0002896	507.2685497825374	25.105	0.14475	25.093	25.045	25.189	-0.012011	1233	88	0.87812483	0.053365707	0.8766054	356.50958	0	21.665924						282	7	3	NaN	NaN	NaN	0.84876	1	8905	8905		0.39566	0	1	34338	+		9072	8323	5279	5381	7131	7131					0.018523305740814067
HMDENELF	8	Unmodified	_HMDENELF_					0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.71602432815	2	517.716024	1033.4175	1.4551	0.00075331	-2.8395	-0.00147	-1.3844	-0.00071673	518.2151573075976	36.155	0.096409	36.157	36.132	36.229	0.0011024	1329	43	0.81912065	0.025858998	0.8176012	332.46436	0	10.495636						124	5	4	NaN	NaN	NaN	0.65075	1	9698	9698		22.126	0	1	8363.1	+		9073	9521	5280	5382	7132	7132					-0.09787632493271303
HMDENELF	8	Unmodified						0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.716024	1033.4175	1.4961	0.00077457	-5.3828	-0.0027868	-3.8867	-0.0020122	518.2138714780107	36.157	0.07238	36.157	36.133	36.205	0	1332	37	0.8172735	0.022167265	0.8172735	331.71463		8.997253	0.00027087	-0.001147	-0.00016387	NaN	22.126	86	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7250.9	+		9074	9521	5280	5382							-0.09787632493271303
HMDENELF	8	Unmodified						0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.716024	1033.4175	1.4551	0.00075331	-2.8395	-0.00147	-1.3844	-0.00071673	518.2151573075976	36.155	0.096409	36.157	36.132	36.229	0.0011024	1329	43	0.81912065	0.025858998	0.8176012	332.46436		10.495636	-0.00027087	0.0014865	0.00016387	NaN	22.126	124	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8363.1	+		9075	9521	5280	5382							-0.09787632493271303
HMESDELGL	9	Unmodified	_HMESDELGL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7291317034001	2	515.729132	1029.44371	1.9542	0.0010079	-0.40892	-0.00021089	1.5453	0.00079697	516.2316992824183	32.2	0.048241	32.196	32.172	32.22	-0.0037613	1305	28	0.83389086	0.016610146	0.8323714	338.47644	0	6.742096						43	3	3	NaN	NaN	NaN	0.66196	1	9541	9541		2.4615	0	1	1975.6			9076	1450	5281	5383	7133	7133					-0.0698336332177405
HMGGGSGGA	9	Unmodified	_HMGGGSGGA_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.6504874519	2	365.650487	729.286422	1.7942	0.00065604	-10.267	-0.003754	-8.4723	-0.0030979	365.646912833045	25.322	0.12062	25.322	25.274	25.395	0	1524	46	0.698637	0.027903616	0.698637	285.1115	0	11.38736						112	6	2	NaN	NaN	NaN	0.65818	1	3747	3747		2.7852	1.3456	1	9487			9077	863	5282	5384	7134	7134					-0.08904978350642523
HMGGGSGGA	9	Unmodified						0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	365.650487	729.286422	2.3238	0.00084969	-9.0205	-0.0032983	-6.6967	-0.0024487	365.6475625652091	25.322	0.14473	25.31	25.262	25.407	-0.012011	1524	43	0.698637	0.026039124	0.69711757	285.1115		10.626495	-0.0061467	0.00063688	-0.00075972	NaN	2.7852	79	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5634.8			9078	863	5282	5384							-0.08904978350642523
HMIYTFGGRI	10	Unmodified	_HMIYTFGGRI_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1194.6088249862003	1	1194.60882	1193.60155	1.8424	0.0022009	-3.4407	-0.0041103	-1.5983	-0.0019094	1194.6048879679024	31.477	0.096527	31.477	31.428	31.525	0	60	64	1.582944	0.037077427	1.582944	320.67807	0	7.5112915						109	5	2	NaN	NaN	NaN	0.77421	1	16261	16261		1.9246	0.22244	1	8420.9			9079	2574	5283	5385	7135	7135					0.012491807281321599
HMIYTFGGRI	10	Unmodified						0	0	0		ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1194.60882	1193.60155	2.0124	0.002404	-1.688	-0.0020165	0.32438	0.00038751	1194.6070667625381	31.476	0.048258	31.471	31.447	31.495	-0.0044155	63	46	1.5811787	0.026486635	1.5796592	320.3204		5.365753	-0.002738	0.0011965	-0.0016424	NaN	1.9246	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3173.8			9080	2574	5283	5385							0.012491807281321599
HMLTDTKTG	9	Unmodified	_HMLTDTKTG_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.24749163205	2	502.247492	1002.48043	1.1207	0.00056285	2.7845	0.0013985	3.9052	0.0019614	502.24884952655975	14.476	0.047884	14.465	14.417	14.465	-0.011218	1338	85	0.81357855	0.051729262	0.8120591	330.34882	0	21.004364						85	3	2	NaN	NaN	NaN	0.33629	1	8514	8514		16.584	0.16752	1	13902			9081	7960	5284	5386	7136	7136					-0.020710667052185272
HMRVHQQL	8	Unmodified	_HMRVHQQL_					0	0	0			REV__ENSG00000165821|ENST00000537235|SALL2	REV__ENSG00000165821|ENST00000537235|SALL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7770849490001	2	524.777085	1047.53962	1.6385	0.00085987	-0.77188	-0.00040507	0.86666	0.0004548	524.7735261510779	23.609	0.16873	23.596	23.548	23.717	-0.013048	1269	64	0.8560222	0.03871101	0.85450274	347.38034	0	15.7092285						212	8	3	NaN	NaN	NaN	0.77489	1	10318	10318		12.588	0	1	35193	+		9082	10402	5285	5387	7137	7137					0.01774874099646695
HMSSQSFSKT	10	Unmodified	_HMSSQSFSKT_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.5098457045667	3	380.509846	1138.50771	1.8275	0.00069537	-10.778	-0.0041011	-8.9505	-0.0034057	380.83922718597887	17.429	0.071993	17.429	17.405	17.477	0	1503	61	0.711653	0.03718263	0.711653	432.73746	0	22.609772						74	4	2	NaN	NaN	NaN	0.76892	1	14388	14388		1.3696	0.38192	1	5188.2	+		9083	10567	5286	5388	7138	7138					-0.05600583164823547
HMTDPEDRD	9	Unmodified	_HMTDPEDRD_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2247448172501	2	558.224745	1114.43494	1.7435	0.00097326	-6.1439	-0.0034297	-4.4004	-0.0024564	558.2215563393557	26.384	0.21719	26.384	26.336	26.553	0	1272	46	0.854179	0.027653694	0.854179	346.3623	0	11.213348						185	10	3	NaN	NaN	NaN	0.49672	1	13445	13445		9.746	2.2056	1	16086	+		9084	9596	5287	5389	7139	7139					-0.11770336958238659
HMTDPEDRD	9	Unmodified						0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.224745	1114.43494	1.7435	0.00097326	-6.1439	-0.0034297	-4.4004	-0.0024564	558.2215563393557	26.384	0.21719	26.384	26.336	26.553	0	1272	46	0.854179	0.027653694	0.854179	346.3623		11.213348	-0.0063683	-0.00029847	0.00075972	NaN	9.746	185	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16086	+		9085	9596	5287	5389							-0.11770336958238659
HMTDPEDRD	9	Unmodified						0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.224745	1114.43494	1.5005	0.00083761	-5.4512	-0.003043	-3.9507	-0.0022054	558.2207336878683	26.408	0.21716	26.397	26.276	26.493	-0.011137	1272	46	0.854179	0.027650714	0.8526596	346.3623		11.212128	0.0063683	0.00047494	-0.00075972	NaN	9.746	152	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13444	+		9086	9596	5287	5389							-0.11770336958238659
HMVFIIGA	8	Unmodified	_HMVFIIGA_					0	0	0			REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	887.4807709261003	1	887.480771	886.473494	1.1904	0.0010564	2.6002	0.0023077	3.7906	0.0033641	887.4832534405822	35.53	0.12065	35.53	35.506	35.627	0	456	55	1.348284	0.032227635	1.348284	274.2206	0	6.554596						203	6	4	NaN	NaN	NaN	0.84651	1	5896	5896		1.6704	0.2308	1	31900	+		9087	8145	5288	5390	7140	7140					0.025716652048913602
HMVFIIGA	8	Unmodified						0	0	0			REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	887.480771	886.473494	1.1904	0.0010564	2.6002	0.0023077	3.7906	0.0033641	887.4832534405822	35.53	0.12065	35.53	35.506	35.627	0	456	55	1.348284	0.032227635	1.348284	274.2206		6.554596	0.00049464	-0.00056574	0.00075972	NaN	1.6704	203	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31900	+		9088	8145	5288	5390							0.025716652048913602
HMVFIIGA	8	Unmodified						0	0	0			REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	REV__ASIC5|p.I257M|1|0.69|ENSG00000256394|chr4:155843771-155843771|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	887.480771	886.473494	0.77521	0.00068799	3.7325	0.0033125	4.5077	0.0040005	887.4848564624239	35.529	0.19297	35.529	35.481	35.674	0.00053024	456	55	1.348284	0.032227635	1.3467646	274.22058		6.5546265	-0.00049464	0.00043909	-0.00075972	NaN	1.6704	202	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29452	+		9089	8145	5288	5390							0.025716652048913602
HMVSDEYEQL	10	Unmodified	_HMVSDEYEQL_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.7715278343501	2	625.771528	1249.5285	1.178	0.00073718	-4.06	-0.0025406	-2.8819	-0.0018034	626.2704890312705	19.322	0.33655	19.308	19.188	19.524	-0.014141	1182	94	0.9093879	0.056904554	0.90786844	368.26154	0	23.043823						354	15	2	NaN	NaN	NaN	0.37681	1	17009	17009		24.562	0.16862	1	38307			9090	3594	5289	5391	7141	7141					-0.0862803757581787
HNAASLPF	8	Unmodified	_HNAASLPF_					0	0	0		ENST00000446672.2_1_13:19968469-19969442:+|nuORF	ENST00000446672.2_1_13:19968469-19969442:+|nuORF	ENST00000446672.2_1_13:19968469-19969442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4311781966001	1	856.431178	855.423902	1.6933	0.0014502	-8.0307	-0.0068777	-6.3374	-0.0054275	856.4247068081055	30.415	0.12064	30.415	30.391	30.511	0	408	73	1.3769034	0.042874098	1.3769034	280.19666	0	8.7247925						112	6	2	NaN	NaN	NaN	0.84651	1	5470	5470		1.6704	0	1	7001.4			9091	7025	5290	5392	7142	7142					-0.009593264795739742
HNGNFQTWM	9	Unmodified	_HNGNFQTWM_					0	0	0		ENST00000442856.1_1_16:79338-84879:-|nuORF;nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R	ENST00000442856.1_1_16:79338-84879:-|nuORF	ENST00000442856.1_1_16:79338-84879:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7429077806501	2	567.742908	1133.47126	0.86266	0.00048977	-1.5506	-0.00088034	-0.68794	-0.00039057	568.2431720303899	35.601	0.12059	35.602	35.577	35.698	0.00053024	1242	31	0.87260187	0.018414915	0.8710824	353.75998	0	7.4655457						74	6	2	NaN	NaN	NaN	0.56671	1	13761	13761		6.8632	0.613	1	5910.3			9092	2412	5291	5393	7143	7143					-0.09013415270896985
HNGNFQTWM	9	Unmodified						0	0	0		ENST00000442856.1_1_16:79338-84879:-|nuORF;nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R	ENST00000442856.1_1_16:79338-84879:-|nuORF	ENST00000442856.1_1_16:79338-84879:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.742908	1133.47126	1.276	0.00072442	-4.9276	-0.0027976	-3.6517	-0.0020732	568.2407949274944	35.627	0.072292	35.627	35.603	35.675	0	1248	31	0.8689189	0.018416882	0.8689189	352.26688		7.466339	0.012551	-0.0023487	-0.0010818	NaN	6.8632	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3840.4			9093	2412	5291	5393							-0.09013415270896985
HNLGFGYPR	9	Unmodified	_HNLGFGYPR_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7697828456501	2	530.769783	1059.52501	0.93076	0.00049402	8.6827	0.0046085	9.6135	0.0051025	530.777342276854	31.163	0.096563	31.163	31.115	31.211	0	1269	61	0.8560222	0.03685367	0.8560222	347.3293	0	14.953278						92	5	2	NaN	NaN	NaN	0.62619	1	11068	11068		4.4131	0.84331	1	9022.8	+		9094	10057	5292	5394	7144	7144					-0.0023687477687417413
HNLGFGYPR	9	Unmodified						0	0	0			REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.769783	1059.52501	0.93076	0.00049402	8.6827	0.0046085	9.6135	0.0051025	530.777342276854	31.163	0.096563	31.163	31.115	31.211	0	1269	61	0.8560222	0.03685367	0.8560222	347.3293		14.953278	0	0	0	NaN	4.4131	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9022.8	+		9095	10057	5292	5394							-0.0023687477687417413
HNMGIVHR	8	Unmodified	_HNMGIVHR_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.250703023	2	482.250703	962.486853	1.341	0.00064671	4.163	0.0020076	5.504	0.0026543	482.2529852726389	12.604	0.24014	12.604	12.532	12.772	0	1350	79	0.80618626	0.04804474	0.80618626	327.53128	0	19.519257						394	11	4	NaN	NaN	NaN	0.6053	1	7405	7405		24.961	7.162	1	80338			9096	984	5293	5395	7145	7145					0.00410916036821618
HNMGIVHR	8	Unmodified	_HNMGIVHR_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.250703023	2	482.250703	962.486853	1.7757	0.00085635	3.9707	0.0019149	5.7464	0.0027712	482.25237128498486	12.606	0.28831	12.597	12.525	12.813	-0.0088415	1347	76	0.8080346	0.04618436	0.8065152	328.28223	0	18.763458						433	13	3	NaN	NaN	NaN	0.6053	1	7249	7249		24.961	1.6266	1	86148			9097	984	5293	5395	7146	7146					0.00410916036821618
HNPSTPGG	8	Unmodified	_HNPSTPGG_					0	0	0		tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.3478424977001	1	766.347842	765.340566	2.4785	0.0018994	-9.6099	-0.0073646	-7.1314	-0.0054652	766.3393832592872	26.118	0.096565	26.107	26.059	26.156	-0.011137	561	46	1.2855089	0.026949644	1.2839894	262.08466	0	5.494385						88	5	2	NaN	NaN	NaN	0.84455	1	4213	4213		2.7852	1.3456	1	5811.9			9098	13977	5294	5396	7147	7147					-0.05149062927421255
HNPSTPGG	8	Unmodified						0	0	0		tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	tr|U7T3Q6|U7T3Q6_FUSNUDioldehydratasereactivasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00496PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	766.347842	765.340566	2.1256	0.0016289	-10.264	-0.0078655	-8.138	-0.0062365	766.3403875583824	26.094	0.096546	26.094	26.046	26.143	0	558	52	1.2873057	0.03054297	1.2873057	262.451		6.226959	-0.0063947	-0.00013499	0.0016581	NaN	2.7852	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6459.9			9099	13977	5294	5396							-0.05149062927421255
HNQLDWDEHS	10	Unmodified	_HNQLDWDEHS_					0	0	0		ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.7681654034501	2	640.768165	1279.52178	1.8132	0.0011618	-4.8831	-0.0031289	-3.0699	-0.0019671	640.7648381236925	27.833	0.14479	27.833	27.784	27.929	0	1071	40	0.977233	0.023791254	0.977233	395.6344	0	9.631897						105	7	3	NaN	NaN	NaN	0.77421	1	18403	18403		1.9246	0.41924	1	8105.2			9100	1905	5295	5397	7148	7148					-0.10680214412172973
HNSSDLID	8	Unmodified	_HNSSDLID_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4057513071001	1	900.405751	899.398475	1.4651	0.0013191	-8.3665	-0.0075333	-6.9015	-0.0062141	900.3970339339736	27.133	0.096531	27.133	27.109	27.205	0	348	58	1.412609	0.0338825	1.412609	287.24026	0	6.889679						122	5	2	NaN	NaN	NaN	0.77891	1	6047	6047		12.049	0.95801	1	12760	+		9101	13531	5296	5398	7149	7149					-0.055248457926495576
HNVCFPSSSG	10	Unmodified	_HNVCFPSSSG_					0	0	0		ENST00000546126.6_1_12:133758239-133761326:+|nuORF	ENST00000546126.6_1_12:133758239-133761326:+|nuORF	ENST00000546126.6_1_12:133758239-133761326:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7216410223001	2	517.721641	1033.42873	1.0111	0.00052347	-2.5257	-0.0013076	-1.5146	-0.00078412	518.2205318926161	12.63	0.14415	12.621	12.549	12.693	-0.0088415	1338	82	0.81357855	0.04986292	0.8120591	330.21487	0	20.238342						244	7	4	NaN	NaN	NaN	0.56921	1	9699	9699		16.584	0.16752	1	19709			9102	7524	5297	5399	7150	7150					-0.08664810399113776
HNWARNLCLC	10	Unmodified	_HNWARNLCLC_					0	0	0			REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2869595310501	2	615.28696	1228.55937	1.0486	0.00064518	-0.64359	-0.00039599	0.40499	0.00024918	615.2869945229039	29.087	0.14484	29.087	28.991	29.136	0	1140	85	0.93509084	0.05139488	0.93509084	378.74072	0	20.816528						269	7	2	NaN	NaN	NaN	0.67523	1	17200	17200		9.746	1.4557	1	100970	+		9103	11392	5298	5400	7151	7151					-0.04577117951907894
HNYMYWYRQ	9	Unmodified	_HNYMYWYRQ_					0	0	0		nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.2012350366	3	454.201235	1359.58188	1.302	0.00059136	-3.2374	-0.0014704	-1.9355	-0.00087909	454.2001531719451	20.02	0.1444	20.006	19.958	20.102	-0.014141	1416	40	0.76547134	0.024086237	0.7639519	464.55762	0	14.617706						97	7	2	NaN	NaN	NaN	0.68977	1	18770	18770		0.079465	0.032541	1	11186			9104	8027	5299	5401	7152	7152					-0.08353195282643355
HNYMYWYRQ	9	Unmodified						0	0	0		nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	454.201235	1359.58188	1.1873	0.00053929	-4.1544	-0.0018869	-2.9671	-0.0013476	454.20008137183424	19.972	0.096174	19.972	19.948	20.045	0	1413	46	0.7673241	0.027794778	0.7673241	465.68204		16.868408	-0.016657	-0.00066328	0.0016861	NaN	0.079465	119	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10685			9105	8027	5299	5401							-0.08353195282643355
HPAAMELVL	9	Unmodified	_HPAAMELVL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.76532024445004	2	490.76532	979.516088	1.4948	0.00073358	-2.6578	-0.0013044	-1.163	-0.00057077	490.7641868233205	24.671	0.14473	24.671	24.598	24.743	0	1329	55	0.81912065	0.033254504	0.81912065	332.70474	0	13.507111						175	7	3	NaN	NaN	NaN	0.098515	1	7868	7868		36.036	5.2452	1	23673			9106	3072	5300	5402	7153	7153					0.02551015542451296
HPAAMELVL	9	Unmodified	_HPAAMELVL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.76532024445004	2	490.76532	979.516088	0.82786	0.00040629	-1.6783	-0.00082365	-0.85043	-0.00041736	490.7648553060759	24.671	0.1688	24.658	24.586	24.755	-0.012392	1329	49	0.81912065	0.029559612	0.8176012	332.70474	0	12.006287						158	8	3	NaN	NaN	NaN	0.032417	1	7704	7704		55.947	32.613	1	20336			9107	3072	5300	5402	7154	7154					0.02551015542451296
HPADMQLVL	9	Unmodified	_HPADMQLVL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2682270741501	2	512.268227	1022.5219	2.1608	0.0011069	-3.0995	-0.0015878	-0.93864	-0.00048084	512.2672176965932	23.513	0.1928	23.513	23.441	23.634	0	1305	58	0.83389086	0.035054564	0.83389086	338.50668	0	14.229919						188	9	2	NaN	NaN	NaN	0.032764	1	9460	9460		55.494	29.379	1	41115			9108	5738	5301	5403	7155	7155					0.011541140541226014
HPADMQLVL	9	Unmodified	_HPADMQLVL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2682270741501	2	512.268227	1022.5219	1.6115	0.00082552	-3.8862	-0.0019908	-2.2747	-0.0011653	512.2665662636404	23.537	0.19291	23.524	23.476	23.669	-0.01305	1305	52	0.83389086	0.03137821	0.8323714	338.50668	0	12.737549						248	9	3	NaN	NaN	NaN	0.27608	1	9272	9272		20.449	5.2733	1	43379			9109	5738	5301	5403	7156	7156					0.011541140541226014
HPADMQLVL	9	Oxidation (M)	_HPADM(Oxidation (M))QLVL_		HPADM(1)QLVL		HPADM(55)QLVL	0	0	1		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2656843852001	2	520.265684	1038.51682	1.4421	0.00075028	-4.3643	-0.0022706	-2.9222	-0.0015203	520.2632556997436	19.9	0.21661	19.885	19.789	20.006	-0.014141	1302	64	0.8357362	0.038740337	0.8342168	339.18637	0	15.72287						186	10	2	NaN	NaN	NaN	0.032764	1	9931	9931		55.494	21.055	1	29548			9110	5738	5301	5404	7157	7157		585			-0.0009018980849759828
HPAFLPQRQ	9	Unmodified	_HPAFLPQRQ_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2987074606	2	547.298707	1092.58286	1.8569	0.0010163	8.0686	0.0044159	9.9255	0.0054322	547.303007516426	16.515	0.16779	16.502	16.43	16.598	-0.012993	1248	46	0.8689189	0.027620852	0.86739945	352.4252	0	11.202759						138	8	3	NaN	NaN	NaN	0.45297	1	12197	12197		11.548	2.4253	1	12283			9111	478	5302	5405	7158	7158					0.04027387148539674
HPAFPSLIL	9	Unmodified	_HPAFPSLIL_					0	0	0			REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.7896526205	2	497.789653	993.564752	2.1371	0.0010638	-3.5325	-0.0017584	-1.3954	-0.00069461	497.7877299471139	25.829	0.16891	25.829	25.781	25.95	0	1296	82	0.8394264	0.049792826	0.8394264	340.88562	0	20.22052						325	8	3	NaN	NaN	NaN	0.24994	1	8350	8350		22.126	0	1	41544	+		9112	11994	5303	5406	7159	7159					0.06771252173848552
HPAFPSLIL	9	Unmodified	_HPAFPSLIL_					0	0	0			REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.7896526205	2	497.789653	993.564752	1.7876	0.00088984	-1.7369	-0.00086463	0.050635	2.5206E-05	497.7887063579681	25.877	0.14482	25.865	25.793	25.938	-0.0116	1296	76	0.8394264	0.046109498	0.83790696	340.88562	0	18.724762						282	7	3	NaN	NaN	NaN	0.11467	1	8188	8188		33.698	0	1	38135	+		9113	11994	5303	5406	7160	7160					0.06771252173848552
HPAFPSLIL	9	Unmodified						0	0	0			REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.789653	993.564752	2.1371	0.0010638	-3.5325	-0.0017584	-1.3954	-0.00069461	497.7877299471139	25.829	0.16891	25.829	25.781	25.95	0	1296	82	0.8394264	0.049792826	0.8394264	340.88562		20.22052	-0.018207	-0.00095776	0.00075972	NaN	33.698	325	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41544	+		9114	11994	5303	5406							0.06771252173848552
HPAFPSLIL	9	Unmodified						0	0	0			REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.789653	993.564752	1.7876	0.00088984	-1.7369	-0.00086463	0.050635	2.5206E-05	497.7887063579681	25.877	0.14482	25.865	25.793	25.938	-0.0116	1296	76	0.8394264	0.046109498	0.83790696	340.88562		18.724762	0.018207	0.00082986	-0.00075972	NaN	33.698	282	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38135	+		9115	11994	5303	5406							0.06771252173848552
HPAGAAAQ	8	Unmodified	_HPAGAAAQ_					0	0	0			REV__nc|ENSG00000163508|O95936|EOMES	REV__nc|ENSG00000163508|O95936|EOMES	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3580132535	1	722.358013	721.350737	1.5451	0.0011161	-5.9359	-0.0042879	-4.3909	-0.0031718	722.3532684795774	30.342	0.02413	30.342	30.342	30.366	0	675	58	1.2170867	0.034267783	1.2170867	248.40129	0	6.993881						50	2	2	NaN	NaN	NaN	0.84876	1	3615	3615		0.39566	0	1	2585.5	+		9116	10282	5304	5407	7161	7161					-0.02108455202198911
HPAGGGLL	8	Unmodified	_HPAGGGLL_					0	0	0			REV__SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|66|2|anti-sense	REV__SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|66|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3991497867001	1	721.39915	720.391873	1.0182	0.00073455	-1.272	-0.00091765	-0.25382	-0.0001831	721.3984052672539	28.821	0.14481	28.813	28.765	28.909	-0.0083504	567	61	1.2819146	0.03595388	1.2803952	261.6388	0	7.338196						175	7	3	NaN	NaN	NaN	0.83849	1	3526	3526		4.0537	2.3833	1	21391	+		9117	13344	5305	5408	7162	7162					0.02049305837283555
HPALALPC	8	Unmodified	_HPALALPC_					0	0	0			REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4338207334999	1	821.433821	820.426544	2.3802	0.0019552	-5.2355	-0.0043006	-2.8553	-0.0023454	821.4295883568756	26.312	0.28961	26.312	26.215	26.505	0	384	76	1.3911947	0.044662952	1.3911947	283.29587	0	9.09494						308	13	3	NaN	NaN	NaN	0.77734	1	5023	5023		12.26	0	1	34503	+		9118	11803	5306	5409	7163	7163					0.009148056537128468
HPALALPC	8	Unmodified						0	0	0			REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.433821	820.426544	2.3802	0.0019552	-5.2355	-0.0043006	-2.8553	-0.0023454	821.4295883568756	26.312	0.28961	26.312	26.215	26.505	0	384	76	1.3911947	0.044662952	1.3911947	283.29587		9.09494	-0.018427	-0.00012738	0.00075972	NaN	12.26	308	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34503	+		9119	11803	5306	5409							0.009148056537128468
HPALALPC	8	Unmodified						0	0	0			REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.433821	820.426544	1.6883	0.0013869	-4.8499	-0.0039838	-3.1615	-0.002597	821.4293937959519	26.36	0.19302	26.349	26.252	26.445	-0.011135	384	55	1.3911947	0.03214538	1.3896753	283.29587		6.5458984	0.018427	0.00018941	-0.00075972	NaN	12.26	233	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32736	+		9120	11803	5306	5409							0.009148056537128468
HPAPDHQSL	9	Unmodified	_HPAPDHQSL_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2435978849	2	501.243598	1000.47264	1.1021	0.00055243	-1.6318	-0.00081791	-0.52964	-0.00026548	501.2428971487318	11.766	0.14415	11.758	11.686	11.83	-0.0081854	1326	73	0.8209676	0.044320166	0.81944823	333.3582	0	17.99646						201	7	2	NaN	NaN	NaN	0.011693	1	8430	8430		87.778	51.192	1	19239			9121	4660	5307	5410	7164	7164					-0.027574579104793884
HPAPEENLQVL	11	Unmodified	_HPAPEENLQVL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8249520008501	2	623.824952	1245.63535	1.2566	0.00078392	-1.4591	-0.00091023	-0.20247	-0.00012631	623.8239818369393	21.007	0.14433	21.007	20.935	21.079	0	1224	34	0.883646	0.02023995	0.883646	357.84946	0	8.196564						134	7	3	NaN	NaN	NaN	0.58571	1	17657	17657		15.822	8.2343	1	13894			9122	3519	5308	5411	7165	7165					0.0223588070086862
HPAPEENLQVL	11	Unmodified	_HPAPEENLQVL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8249520008501	2	623.824952	1245.63535	0.62981	0.00039289	-0.17677	-0.00011027	0.45304	0.00028262	623.8248977320335	21.007	0.12041	20.993	20.969	21.089	-0.014086	1224	37	0.883646	0.022078753	0.88212657	357.84946	0	8.941223						136	6	3	NaN	NaN	NaN	0.16517	1	16916	16916		31.675	18.212	1	15283			9123	3519	5308	5411	7166	7166					0.0223588070086862
HPASAEFVL	9	Unmodified	_HPASAEFVL_					0	0	0		ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	ENSG00000132423|ENST00000254759|COQ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7532671142	2	485.753267	969.491981	1.5039	0.00073053	-0.56442	-0.00027417	0.9395	0.00045637	485.7530274956677	21.85	0.14447	21.836	21.788	21.932	-0.013895	1353	49	0.8043377	0.029569209	0.80281824	326.74704	0	12.011902						179	7	3	NaN	NaN	NaN	0.42773	1	7444	7444		12.588	0	1	18910			9124	2758	5309	5412	7167	7167					0.006014983804220719
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.20090068559995	3	421.200901	1260.58087	1.6834	0.00070905	-2.1081	-0.00088793	-0.42468	-0.00017888	421.20004151556276	17.189	0.072014	17.189	17.165	17.237	0	1395	52	0.7784366	0.03148371	0.7784366	472.79877	0	19.122253						96	4	3	NaN	NaN	NaN	0.67772	1	18009	18009		4.2106	0	1	9010.9			9125	1143	5310	5413	7168	7168					-0.03899454442239403
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2977127951	2	631.297713	1260.58087	2.0164	0.0012729	-2.0356	-0.0012851	-0.019284	-1.2174E-05	631.2965792227295	17.189	0.2158	17.189	17.141	17.357	0	1176	109	0.9130621	0.06613624	0.9130621	369.71402	0	26.779663						542	10	4	NaN	NaN	NaN	0.0099716	1	18010	18010		69.32	51.35	1	84965			9126	1143	5310	5413	7169	7169					-0.03899454442239403
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2977127951	2	631.297713	1260.58087	1.8169	0.001147	-1.835	-0.0011584	-0.018106	-1.143E-05	631.2966896409723	17.282	0.23992	17.268	17.196	17.436	-0.013567	1176	97	0.9130621	0.058787704	0.91154265	369.71402	0	23.804138						625	11	4	NaN	NaN	NaN	0.0015715	1	17231	17231		77.489	51.688	1	99632			9127	1143	5310	5413	7170	7170					-0.03899454442239403
HPASDKIEAYM	11	Unmodified	_HPASDKIEAYM_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.20090068559995	3	421.200901	1260.58087	1.5226	0.00064132	-1.1293	-0.00047565	0.39333	0.00016567	421.20030464911304	17.258	0.11996	17.244	17.196	17.316	-0.013567	1398	88	0.77658504	0.05374825	0.7750656	471.67416	0	32.64508						145	6	3	NaN	NaN	NaN	0.4078	1	17232	17232		12.15	5.0191	1	9731			9128	1143	5310	5413	7171	7171					-0.03899454442239403
HPASDKIEAYM	11	Oxidation (M)	_HPASDKIEAYM(Oxidation (M))_		HPASDKIEAYM(1)		HPASDKIEAYM(72)	0	0	1		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.29517010615	2	639.29517	1276.57579	2.5568	0.0016346	-2.5351	-0.0016207	0.021718	1.3884E-05	639.2939061992182	13.637	0.26426	13.637	13.589	13.853	0	1161	109	0.9222442	0.06613624	0.9222442	373.3813	0	26.776031						598	12	4	NaN	NaN	NaN	0.0071196	1	18350	18350		72.093	43.598	1	85152			9129	1143	5310	5414	7172	7172		123			-0.05143758304848234
HPASDKIEAYM	11	Oxidation (M)	_HPASDKIEAYM(Oxidation (M))_		HPASDKIEAYM(1)		HPASDKIEAYM(72)	0	0	1		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.29517010615	2	639.29517	1276.57579	1.8298	0.0011698	-1.1836	-0.00075669	0.64614	0.00041308	639.2945346862001	13.661	0.1918	13.651	13.603	13.795	-0.010098	1164	115	0.9204082	0.06980294	0.91888875	372.63794	0	28.260529						634	9	4	NaN	NaN	NaN	0.0068474	1	17535	17535		72.358	51.845	1	78915			9130	1143	5310	5414	7173	7173		123			-0.05143758304848234
HPASLSDVN	9	Unmodified	_HPASLSDVN_					0	0	0			REV__ENSG00000138756|ENST00000502613|BMP2K	REV__ENSG00000138756|ENST00000502613|BMP2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.23015615865	2	470.230156	938.445759	1.5338	0.00072122	-4.7195	-0.0022193	-3.1858	-0.001498	470.2272786835204	18.94	0.024012	18.94	18.916	18.94	0	1305	64	0.83389086	0.038773835	0.83389086	338.90915	0	15.758423						91	2	3	NaN	NaN	NaN	0.53206	1	6777	6777		8.2903	0	1	9011.2	+		9131	9743	5311	5415	7174	7174					-0.025925665216618654
HPASLSDVN	9	Unmodified						0	0	0			REV__ENSG00000138756|ENST00000502613|BMP2K	REV__ENSG00000138756|ENST00000502613|BMP2K	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	470.230156	938.445759	1.5338	0.00072122	-4.7195	-0.0022193	-3.1858	-0.001498	470.2272786835204	18.94	0.024012	18.94	18.916	18.94	0	1305	64	0.83389086	0.038773835	0.83389086	338.90915		15.758423	0	0	0	NaN	8.2903	91	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9011.2	+		9132	9743	5311	5415							-0.025925665216618654
HPAWYGDTL	9	Unmodified	_HPAWYGDTL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2483489118001	2	530.248349	1058.48214	1.5763	0.00083582	-0.24682	-0.00013088	1.3295	0.00070494	530.7493069099169	21.416	0.096214	21.416	21.344	21.44	0	1275	58	0.85233563	0.03503555	0.85233563	345.8379	0	14.21579						90	5	2	NaN	NaN	NaN	0.14945	1	11009	11009		28.667	0.8777	1	16228			9133	357	5312	5416	7175	7175					-0.04475689624950974
HPCLLGAMH	9	Unmodified	_HPCLLGAMH_					0	0	0			REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF	REV__ENST00000341259.6_1_12:111886343-111886586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4648032859002	1	978.464803	977.457527	1.5598	0.0015262	-8.8307	-0.0086405	-7.2709	-0.0071143	978.4558729972348	28.29	0.12064	28.281	28.257	28.378	-0.0089779	291	46	1.446459	0.02669537	1.4449396	293.76913	0	5.421692						120	6	2	NaN	NaN	NaN	0.58547	1	7648	7648		6.0903	2.937	1	10635	+		9134	11788	5313	5417	7176	7176					-0.03210364303674851
HPDAAEILRL	10	Unmodified	_HPDAAEILRL_					0	0	0		nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	nc|ENSG00000106665|Q9UDT6-2|CLIP2	nc|ENSG00000106665|Q9UDT6-2|CLIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8169300035	2	567.81693	1133.61931	1.8618	0.0010572	-2.8528	-0.0016199	-0.99103	-0.00056273	567.8146797138243	22.477	0.16857	22.477	22.38	22.549	0	1206	79	0.894683	0.047827005	0.894683	362.7113	0	19.389435						182	8	3	NaN	NaN	NaN	0.52943	1	14230	14230		18.233	7.0632	1	24053			9135	1612	5314	5418	7177	7177					0.05784219254610434
HPDAFDNELIL	11	Unmodified	_HPDAFDNELIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3169597932501	2	642.31696	1282.61937	1.6506	0.0010602	-2.0201	-0.0012975	-0.36941	-0.00023728	642.8167695586775	27.084	0.16895	27.084	27.012	27.181	0	1110	55	0.95342636	0.032993257	0.95342636	385.98627	0	13.357025						148	8	2	NaN	NaN	NaN	0.33431	1	18469	18469		24.4	14.654	1	45528			9136	3404	5315	5419	7178	7178					-0.010638255360390758
HPDAFDNELIL	11	Unmodified	_HPDAFDNELIL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3169597932501	2	642.31696	1282.61937	1.7008	0.0010925	-2.7989	-0.0017978	-1.0981	-0.00070534	642.816207381175	27.108	0.16893	27.098	27.025	27.194	-0.010126	1107	76	0.9552588	0.045841277	0.9537394	386.72815	0	18.558441						209	8	3	NaN	NaN	NaN	0.26033	1	17645	17645		27.046	10.462	1	32693			9137	3404	5315	5419	7179	7179					-0.010638255360390758
HPDASSLTVL	10	Unmodified	_HPDASSLTVL_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2745636623	2	520.274564	1038.53457	1.5725	0.00081813	-0.96474	-0.00050193	0.60775	0.0003162	520.2737585562029	21.657	0.14441	21.643	21.571	21.715	-0.013897	1314	46	0.8283535	0.027683675	0.8268341	336.19	0	11.235474						107	7	2	NaN	NaN	NaN	0.62764	1	9935	9935		13.003	2.3979	1	9155.4			9138	1308	5316	5420	7180	7180					0.016848487179913718
HPDASSLTVL	10	Unmodified						0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.274564	1038.53457	1.655	0.00086108	-2.3676	-0.0012318	-0.71251	-0.0003707	520.2729229571651	21.657	0.14459	21.657	21.585	21.73	0	1308	43	0.83204526	0.02584225	0.83204526	337.68832		10.488159	0.0069844	-0.00059911	0.0026056	NaN	13.003	88	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8192.5			9139	1308	5316	5420							0.016848487179913718
HPDEDISL	8	Unmodified	_HPDEDISL_					0	0	0		ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.2167144324	2	463.216714	924.418876	1.8332	0.00084915	-2.8289	-0.0013104	-0.99579	-0.00046127	463.21529024208996	18.412	0.31192	18.412	18.316	18.628	0	1377	46	0.7895419	0.027755678	0.7895419	320.95514	0	11.282898						368	14	4	NaN	NaN	NaN	0.12449	1	6489	6489		59.445	23.409	1	86151			9140	389	5317	5421	7181	7181					-0.04635675132851702
HPDEDISL	8	Unmodified	_HPDEDISL_					0	0	0		ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.4261523982001	1	925.426152	924.418876	2.5044	0.0023177	-1.2254	-0.0011341	1.279	0.0011836	925.4242996829515	18.412	0.2639	18.412	18.316	18.58	0	378	58	1.3947657	0.033922076	1.3947657	283.49625	0	6.894928						283	12	2	NaN	NaN	NaN	0.09307	1	6490	6490		65.672	21.425	1	33064			9141	389	5317	5421	7182	7182					-0.04635675132851702
HPDEDISL	8	Unmodified	_HPDEDISL_					0	0	0		ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.2167144324	2	463.216714	924.418876	1.4279	0.00066145	-1.3576	-0.00062884	0.070384	3.2603E-05	463.21621149562253	18.434	0.31204	18.42	18.324	18.636	-0.01395	1377	40	0.7895419	0.024052322	0.78802246	320.9551	0	9.777466						384	14	4	NaN	NaN	NaN	0.19946	1	6364	6364		50.033	19.422	1	85095			9142	389	5317	5421	7183	7183					-0.04635675132851702
HPDEDISL	8	Unmodified	_HPDEDISL_					0	0	0		ENST00000584696.1_1_17:30693734-30695045:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	ENST00000584696.1_1_17:30693734-30695045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	925.4261523982001	1	925.426152	924.418876	1.6047	0.001485	-0.5611	-0.00051926	1.0436	0.00096577	925.4256700564891	18.434	0.26406	18.42	18.324	18.588	-0.01395	375	58	1.3965509	0.033914924	1.3950315	283.8591	0	6.893463						331	12	3	NaN	NaN	NaN	0.09307	1	6365	6365		65.672	29.636	1	34674			9143	389	5317	5421	7184	7184					-0.04635675132851702
HPDEFGFLL	9	Unmodified	_HPDEFGFLL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7663744894501	2	537.766374	1073.5182	1.7257	0.000928	-1.3173	-0.00070842	0.40831	0.00021957	537.7661411414812	29.642	0.21718	29.642	29.594	29.811	0	1245	52	0.87076044	0.03131038	0.87076044	353.25027	0	12.701996						242	10	3	NaN	NaN	NaN	0.20577	1	11706	11706		24.961	9.4983	1	22706			9144	2677	5318	5422	7185	7185					-0.01562232448100076
HPDEPLYSF	9	Unmodified	_HPDEPLYSF_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.75346407945	2	552.753464	1103.49238	1.6945	0.00093664	-0.72988	-0.00040345	0.96462	0.0005332	552.7527753539484	22.79	0.26534	22.79	22.67	22.935	0	1293	76	0.84127116	0.04608953	0.84127116	341.1696	0	18.691162						428	12	4	NaN	NaN	NaN	0.04947	1	12972	12972		47.136	26.622	1	80954			9145	2203	5319	5423	7186	7186					-0.05523126690377467
HPDEPLYSF	9	Unmodified	_HPDEPLYSF_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.75346407945	2	552.753464	1103.49238	1.4986	0.00082836	-0.18114	-0.00010013	1.3175	0.00072823	552.7533610008384	22.79	0.2893	22.776	22.68	22.969	-0.01354	1296	82	0.8394264	0.04977131	0.83790696	340.42145	0	20.184265						480	13	4	NaN	NaN	NaN	0.04947	1	12630	12630		47.136	26.687	1	93062			9146	2203	5319	5423	7187	7187					-0.05523126690377467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-2|POLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.7989342156001	2	622.798934	1243.58332	1.7076	0.0010635	-1.2803	-0.00079738	0.42732	0.00026613	622.797865529227	16.254	0.28801	16.254	16.182	16.47	0	1200	73	0.89836043	0.0441432	0.89836043	363.8149	0	17.876984						515	13	3	NaN	NaN	NaN	0.00018362	1	17616	17616		83.13	44.999	1	60560			9147	1251	5320	5424	7188	7188					-0.028732827129033467
HPDESGSKFQL	11	Unmodified	_HPDESGSKFQL_					0	0	0		nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF	nc|ENSG00000100479|P56282-2|POLE2	nc|ENSG00000100479|P56282-2|POLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.7989342156001	2	622.798934	1243.58332	1.5029	0.00093603	-0.93905	-0.00058484	0.56389	0.00035119	622.7982923535521	16.323	0.23978	16.31	16.214	16.454	-0.012995	1200	82	0.89836043	0.049658418	0.896841	363.8149	0	20.110504						444	11	3	NaN	NaN	NaN	0.048526	1	16874	16874		50.211	19.601	1	57643			9148	1251	5320	5424	7189	7189					-0.028732827129033467
HPDFPISI	8	Unmodified	_HPDFPISI_					0	0	0		DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.4777940382002	1	925.477794	924.470518	1.5951	0.0014762	0.4796	0.00044386	2.0747	0.0019201	925.4784953538465	24.237	0.14482	24.237	24.14	24.285	0	330	73	1.4233059	0.04279208	1.4233059	289.29703	0	8.697784						114	7	2	NaN	NaN	NaN	0.81251	1	6496	6496		7.5404	0	1	5917.3			9149	263	5321	5425	7190	7190					0.005261133517251437
HPDFPMQIEQL	11	Oxidation (M)	_HPDFPM(Oxidation (M))QIEQL_		HPDFPM(1)QIEQL		HPDFPM(46)QIEQL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.8240947211	2	685.824095	1369.63364	1.664	0.0011412	-1.6947	-0.0011622	-0.03063	-2.1007E-05	685.8245133368238	23.947	0.16882	23.934	23.861	24.03	-0.013048	1107	52	0.9552588	0.031145215	0.9537394	386.46628	0	12.600311						194	8	3	NaN	NaN	NaN	0.066897	1	18867	18867		45.55	21.157	1	16398			9150	5678;276	5322	5426	7191	7191		20			-0.0363949637942369
HPDFPTVL	8	Unmodified	_HPDFPTVL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.24253525239993	2	463.242535	924.470518	0.80025	0.00037071	-1.7524	-0.00081179	-0.95216	-0.00044108	463.24190393839586	24.188	0.169	24.188	24.068	24.237	0	1395	73	0.7784366	0.044406712	0.7784366	316.4405	0	18.051666						206	8	3	NaN	NaN	NaN	0.27293	1	6494	6494		44.247	18.495	1	23890			9151	4197	5323	5427	7192	7192					0.005261133517024064
HPDFPTVL	8	Unmodified	_HPDFPTVL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.24253525239993	2	463.242535	924.470518	0.72576	0.0003362	-2.4481	-0.001134	-1.7223	-0.00079784	463.2414508191148	24.212	0.16889	24.199	24.103	24.272	-0.012749	1395	70	0.7784366	0.04255873	0.77691716	316.4405	0	17.300446						185	8	3	NaN	NaN	NaN	0.27293	1	6367	6367		44.247	13.456	1	24160			9152	4197	5323	5427	7193	7193					0.005261133517024064
HPDGSAVVVVL	11	Unmodified	_HPDGSAVVVVL_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-5|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.8060309662001	2	546.806031	1091.59751	1.6941	0.00092636	-2.1139	-0.0011559	-0.41973	-0.00022951	546.804820000569	23.682	0.19279	23.669	23.621	23.813	-0.013048	1278	61	0.85049206	0.036861658	0.8489726	344.95538	0	14.950897						214	9	3	NaN	NaN	NaN	0.19696	1	12160	12160		30.61	15.147	1	23999			9153	5081	5324	5428	7194	7194					0.05537414506034111
HPDGSAVVVVL	11	Unmodified						0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;nc|ENSG00000177628|P04062-5|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.806031	1091.59751	1.4776	0.00080795	2.0666	0.0011301	3.5442	0.001938	546.8063248435166	23.827	0.048096	23.827	23.803	23.851	0	1239	70	0.87444305	0.04235196	0.87444305	354.66977		17.177765	0.078951	0.0036848	0.012735	NaN	30.61	73	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5956.9			9154	5081	5324	5428							0.05537414506034111
HPDGVASVSF	10	Unmodified	_HPDGVASVSF_					0	0	0		ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	ENSG00000102241|ENST00000218364|HTATSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.24580622285004	2	508.245806	1014.47706	1.3545	0.0006884	-1.5145	-0.00076973	-0.16002	-8.1328E-05	508.2450013298622	20.068	0.16852	20.054	19.982	20.15	-0.014141	1344	34	0.8098828	0.020327687	0.8083634	328.79553	0	8.2526245						103	8	2	NaN	NaN	NaN	0.37681	1	8972	8972		24.562	6.763	1	11186			9155	1372	5325	5429	7195	7195					-0.029599934875591316
HPDHLSKYQNE	11	Unmodified	_HPDHLSKYQNE_					0	0	0			REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2	REV__nc|ENSG00000188738|Q5CZC0-2|FSIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.3205651147001	2	684.320565	1366.62658	2.1023	0.0014386	1.9257	0.0013178	4.028	0.0027565	684.3220168478261	11.812	0.12017	11.812	11.788	11.908	0	1140	31	0.93509084	0.018345416	0.93509084	378.31528	0	7.422119						54	6	2	NaN	NaN	NaN	0.62211	1	19761	19761		12.57	0	1	3735	+		9156	11067	5326	5430	7196	7196					-0.042070929355986664
HPDIFIEHF	9	Unmodified	_HPDIFIEHF_					0	0	0		nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7850985588501	2	577.785099	1153.55564	2.1174	0.0012234	-3.5043	-0.0020247	-1.3869	-0.00080133	577.7841457232649	23.272	0.19291	23.272	23.2	23.393	0	1218	52	0.8873258	0.031276584	0.8873258	359.65393	0	12.677124						248	9	3	NaN	NaN	NaN	0.074859	1	14920	14920		39.459	18.903	1	41186			9157	2298	5327	5431	7197	7197					-0.014991411824667011
HPDIHKAIM	9	Unmodified	_HPDIHKAIM_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	354.5235380224666	3	354.523538	1060.54878	2.0419	0.0007239	-2.4172	-0.00085695	-0.37529	-0.00013305	354.5226214429857	13.949	0.16802	13.949	13.877	14.045	0	1482	37	0.72465914	0.022287786	0.72465914	441.03275	0	13.564514						101	8	2	NaN	NaN	NaN	0.47587	1	11131	11131		9.6116	6.3506	1	10168			9158	3555	5328	5432	7198	7198					0.020932226652803365
HPDIIRPIT	9	Unmodified	_HPDIIRPIT_					0	0	0		ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.30874083065	2	531.308741	1060.60293	0.93382	0.00049614	-1.6009	-0.00085056	-0.66705	-0.00035441	531.3078834423052	21.826	0.14437	21.812	21.74	21.884	-0.013895	1227	97	0.88180584	0.058953166	0.8802864	357.78635	0	23.91983						182	7	3	NaN	NaN	NaN	0.46215	1	10899	10899		11.17	0	1	14298			9159	4816	5329	5433	7199	7199					0.07505138088504282
HPDLLIKVL	9	Unmodified	_HPDLLIKVL_					0	0	0		nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.3316846107001	2	524.331685	1046.64882	1.1222	0.00058839	-2.1449	-0.0011247	-1.0228	-0.00053627	524.3305259538336	24.647	0.19292	24.634	24.586	24.779	-0.012394	1227	58	0.88180584	0.034975052	0.8802864	357.84747	0	14.193298						193	9	3	NaN	NaN	NaN	0.089764	1	10296	10296		37.302	9.5135	1	24247			9160	2888	5330	5434	7200	7200					0.1273578327075029
HPDPDSSVKI	10	Unmodified	_HPDPDSSVKI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7774704920001	2	547.77747	1093.54039	1.2237	0.00067033	-1.0415	-0.00057053	0.18218	9.9793E-05	547.7768252498666	14.837	0.19219	14.837	14.765	14.957	0	1329	40	0.81912065	0.024008036	0.81912065	332.22394	0	9.737335						178	9	2	NaN	NaN	NaN	0.31827	1	12554	12554		32.778	18.353	1	28115			9161	5784	5331	5435	7201	7201					-0.0026405277030789875
HPDPDSSVKI	10	Unmodified	_HPDPDSSVKI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7774704920001	2	547.77747	1093.54039	1.0796	0.00059138	-0.85211	-0.00046677	0.22749	0.00012462	547.77715042793	14.86	0.2162	14.848	14.776	14.992	-0.011738	1326	40	0.8209676	0.024010658	0.81944823	332.97305	0	9.738403						189	10	3	NaN	NaN	NaN	0.27005	1	12232	12232		41.839	13.343	1	22312			9162	5784	5331	5435	7202	7202					-0.0026405277030789875
HPDPFDEIILF	11	Unmodified	_HPDPFDEIILF_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.83752805985	2	671.837528	1341.6605	0.96663	0.00064942	-3.2389	-0.002176	-2.2723	-0.0015266	671.8346386610061	34.155	0.19304	34.155	34.059	34.252	0	1119	34	0.9479278	0.020165801	0.9479278	383.58026	0	8.160126						140	9	2	NaN	NaN	NaN	0.48069	1	19434	19434		19.164	7.4247	1	15008			9163	4673	5332	5436	7203	7203					0.003339355034086111
HPDPFDEIILF	11	Unmodified	_HPDPFDEIILF_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.83752805985	2	671.837528	1341.6605	0.93159	0.00062588	-2.4779	-0.0016647	-1.5463	-0.0010389	672.3375755826888	34.178	0.21712	34.177	34.105	34.322	-0.0012474	1113	46	0.9515937	0.02748996	0.95007426	385.0637	0	11.12384						154	10	2	NaN	NaN	NaN	0.19696	1	18568	18568		30.61	7.5243	1	14954			9164	4673	5332	5436	7204	7204					0.003339355034086111
HPDPTRLLL	9	Unmodified	_HPDPTRLLL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3087408306501	2	531.308741	1060.60293	1.8292	0.00097185	-2.8145	-0.0014954	-0.98534	-0.00052352	531.3073746553883	21.754	0.16859	21.754	21.657	21.826	0	1227	91	0.88180584	0.055268586	0.88180584	357.78635	0	22.424805						176	8	3	NaN	NaN	NaN	0.27507	1	11147	11147		20.513	1.3497	1	14508			9165	5325	5333	5437	7205	7205					0.07505138088527019
HPDPTRLLLF	10	Unmodified	_HPDPTRLLLF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.84294778875	2	604.842948	1207.67134	1.2535	0.00075817	-1.7475	-0.001057	-0.49404	-0.00029882	604.8417256952545	26.891	0.19302	26.891	26.795	26.988	0	1131	106	0.94059354	0.06424016	0.94059354	381.0427	0	26.024231						555	9	4	NaN	NaN	NaN	0.15916	1	16680	16680		39.039	16.913	1	101270			9166	5325	5334	5438	7206	7206					0.07581382668354308
HPDPTRLLLF	10	Unmodified	_HPDPTRLLLF_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.84294778875	2	604.842948	1207.67134	0.86079	0.00052064	-1.9609	-0.0011861	-1.1001	-0.00066542	604.841731943326	26.963	0.26549	26.952	26.856	27.121	-0.010645	1137	94	0.9369253	0.056904554	0.93540585	379.55664	0	23.05252						556	12	4	NaN	NaN	NaN	0.57785	1	16007	16007		16.226	0.76316	1	93794			9167	5325	5334	5438	7207	7207					0.07581382668354308
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.76162346254995	2	496.761623	991.508694	2.0355	0.0010112	-1.1316	-0.00056212	0.90396	0.00044905	496.7611435234382	17.477	0.33569	17.477	17.333	17.669	0	1335	64	0.8154261	0.03878647	0.8154261	331.14862	0	15.751373						246	15	2	NaN	NaN	NaN	0.21199	1	8268	8268		24.562	11.992	1	51389			9168	2015	5335	5439	7208	7208					0.012599992663695048
HPDQAQAIL	9	Unmodified	_HPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.76162346254995	2	496.761623	991.508694	1.4845	0.00073744	-1.4033	-0.00069709	0.081236	4.0355E-05	496.76166393676397	17.498	0.31182	17.484	17.364	17.676	-0.013569	1335	61	0.8154261	0.036937475	0.81390667	331.14862	0	15.000519						411	14	3	NaN	NaN	NaN	0.048656	1	8103	8103		47.482	20.185	1	70036			9169	2015	5335	5439	7209	7209					0.012599992663695048
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.75687243565	2	527.756872	1053.49919	1.0643	0.0005617	-1.3762	-0.00072627	-0.31184	-0.00016458	527.7560056811093	12.772	0.33627	12.772	12.652	12.988	0	1332	73	0.8172735	0.044324994	0.8172735	331.63147	0	17.986084						577	15	3	NaN	NaN	NaN	0.27507	1	10781	10781		20.513	0.064659	1	74483			9170	5966	5336	5440	7210	7210					-0.025417690191488873
HPDRSQPAF	9	Unmodified	_HPDRSQPAF_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.75687243565	2	527.756872	1053.49919	0.89316	0.00047137	-0.42515	-0.00022437	0.46801	0.000247	527.7567486906448	12.822	0.35989	12.813	12.669	13.028	-0.00947	1329	70	0.81912065	0.04247117	0.8176012	332.381	0	17.233887						495	16	3	NaN	NaN	NaN	0.040769	1	10558	10558		50.831	20.221	1	65150			9171	5966	5336	5440	7211	7211					-0.025417690191488873
HPDSATGAMAL	11	Oxidation (M)	_HPDSATGAM(Oxidation (M))AL_		HPDSATGAM(1)AL		HPDSATGAM(47)AL	0	0	1		nc|ENSG00000171056|Q9BT81-2|SOX7;ENSG00000171056|ENST00000304501|SOX7	nc|ENSG00000171056|Q9BT81-2|SOX7	nc|ENSG00000171056|Q9BT81-2|SOX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7478557728	2	543.747856	1085.48116	1.4415	0.00078379	-1.9082	-0.0010376	-0.46669	-0.00025376	543.7471111718683	14.261	0.19161	14.249	14.201	14.393	-0.011219	1299	40	0.8375814	0.023982108	0.83606195	339.74274	0	9.727722						126	9	3	NaN	NaN	NaN	0.059285	1	11882	11882		47.482	28.363	1	9344			9172	4763	5337	5441	7212	7212		505			-0.058162720561767856
HPDSEEQQQRL	11	Unmodified	_HPDSEEQQQRL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.82092925545	2	683.820929	1365.62731	1.5305	0.0010466	-1.1106	-0.00075942	0.41997	0.00028718	683.8198338728878	11.79	0.16816	11.782	11.734	11.902	-0.0081854	1143	34	0.9332562	0.02018106	0.93173677	377.5758	0	8.164825						97	8	2	NaN	NaN	NaN	0.07051	1	18826	18826		44.633	29.171	1	9666.9			9173	3067	5338	5442	7213	7213					-0.04088298286592362
HPDSIEYGL	9	Unmodified	_HPDSIEYGL_					0	0	0		ENSG00000147099|ENST00000373573|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8	ENSG00000147099|ENST00000373573|HDAC8	ENSG00000147099|ENST00000373573|HDAC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.74563904735	2	515.745639	1029.47673	1.9202	0.00099035	-4.4578	-0.0022991	-2.5376	-0.0013088	515.7443883538872	20.069	0.19221	20.069	19.997	20.189	0	1320	40	0.824661	0.02400285	0.824661	334.7299	0	9.742767						140	9	2	NaN	NaN	NaN	0.23112	1	9745	9745		23.334	8.159	1	13378			9174	3583	5339	5443	7214	7214					-0.036834132074318404
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000276410|ENST00000615966|H2BC3;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000274641|ENST00000616182|H2BC17	ENSG00000274641|ENST00000616182|H2BC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.27678038775	2	572.27678	1142.53901	1.4418	0.00082509	-0.062617	-3.5834E-05	1.3791	0.00078925	572.2775271526765	13.108	0.16814	13.108	13.06	13.228	0	1218	34	0.8873258	0.020235598	0.8873258	359.6949	0	8.202881						112	8	2	NaN	NaN	NaN	0.26275	1	14541	14541		26.96	13.497	1	10042			9175	2429	5340	5444	7215	7215					-0.026560101307495643
HPDTGISSKAM	11	Unmodified	_HPDTGISSKAM_					0	0	0		ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000276410|ENST00000615966|H2BC3;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000234289|ENST00000599962|H2BC12L;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000274641|ENST00000616182|H2BC17	ENSG00000274641|ENST00000616182|H2BC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.27678038775	2	572.27678	1142.53901	0.99647	0.00057026	0.6593	0.0003773	1.6558	0.00094756	572.2777130366806	13.134	0.14375	13.124	13.076	13.22	-0.00947	1218	34	0.8873258	0.020235598	0.8858064	359.69485	0	8.202881						106	7	2	NaN	NaN	NaN	0.16151	1	14062	14062		33.907	18.445	1	9576			9176	2429	5340	5444	7216	7216					-0.026560101307495643
HPDVAWDLM	9	Unmodified	_HPDVAWDLM_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555052.1_1_14:21542936-21543858:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2500343209999	2	542.250034	1082.48552	2.0012	0.0010852	-3.2982	-0.0017884	-1.297	-0.00070329	542.2487056068167	26.143	0.16895	26.143	26.046	26.215	0	1299	46	0.8375814	0.027677655	0.8375814	339.75455	0	11.227081						147	8	2	NaN	NaN	NaN	0.61413	1	12075	12075		4.9097	1.7564	1	15745			9177	4427	5341	5445	7217	7217					-0.05242762842635784
HPDVAWDLM	9	Oxidation (M)	_HPDVAWDLM(Oxidation (M))_		HPDVAWDLM(1)		HPDVAWDLM(55)	0	0	1		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555052.1_1_14:21542936-21543858:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2474916320499	2	550.247492	1098.48043	1.4962	0.00082329	-2.2028	-0.0012121	-0.70659	-0.0003888	550.7474566377737	22.139	0.26539	22.139	22.043	22.308	0	1290	49	0.84311575	0.029508412	0.84311575	341.9369	0	11.96756						291	12	4	NaN	NaN	NaN	0.032764	1	12771	12771		55.494	31.643	1	33047			9178	4427	5341	5446	7218	7218		474			-0.06487066705244615
HPDVAWDLM	9	Oxidation (M)	_HPDVAWDLM(Oxidation (M))_		HPDVAWDLM(1)		HPDVAWDLM(68)	0	0	1		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555052.1_1_14:21542936-21543858:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2474916320499	2	550.247492	1098.48043	1.1329	0.00062338	-2.1345	-0.0011745	-1.0016	-0.00055112	550.2465147905854	22.139	0.16867	22.125	22.005	22.173	-0.013731	1290	64	0.84311575	0.038719356	0.8415963	341.9369	0	15.7031555						192	8	2	NaN	NaN	NaN	0.023074	1	12439	12439		68.108	42.357	1	32679			9179	4427	5341	5446	7219	7219		474			-0.06487066705244615
HPDVDEHSV	9	Unmodified	_HPDVDEHSV_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7305202994	2	517.73052	1033.44649	1.1401	0.00059026	-1.2874	-0.00066652	-0.1473	-7.6261E-05	517.7298705979032	12.7	0.14405	12.7	12.604	12.748	0	1308	67	0.83204526	0.040626824	0.83204526	337.71005	0	16.489624						156	7	3	NaN	NaN	NaN	0.074859	1	9907	9907		39.459	26.871	1	12277			9180	2992	5342	5447	7220	7220					-0.06889771872624806
HPDVDEHSV	9	Unmodified	_HPDVDEHSV_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7305202994	2	517.73052	1033.44649	1.0785	0.00055836	-2.2618	-0.001171	-1.1833	-0.00061265	517.729466424935	12.678	0.14416	12.669	12.645	12.789	-0.00947	1305	67	0.83389086	0.040622413	0.8323714	338.45914	0	16.487823						153	7	3	NaN	NaN	NaN	0.028349	1	9702	9702		61.271	37.421	1	10634			9181	2992	5342	5447	7221	7221					-0.06889771872624806
HPDVDEHSVM	10	Unmodified	_HPDVDEHSVM_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2507626025	2	583.250763	1164.48697	1.4855	0.00086641	3.7432	0.0021832	5.2287	0.0030496	583.2495423433639	14.692	0.095782	14.68	14.608	14.704	-0.011737	1218	49	0.8873258	0.029441535	0.8858064	359.614	0	11.932007						87	5	2	NaN	NaN	NaN	0.14619	1	14759	14759		40.154	22.355	1	7609.2			9182	2992	5343	5448	7222	7222					-0.08869173544508158
HPDVDEHSVM	10	Oxidation (M)	_HPDVDEHSVM(Oxidation (M))_		HPDVDEHSVM(1)		HPDVDEHSVM(83)	0	0	1		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.24821991355	2	591.24822	1180.48189	0.86419	0.00051095	-0.29806	-0.00017623	0.56613	0.00033472	591.2486344973838	12.606	0.21626	12.597	12.501	12.717	-0.0088415	1224	46	0.883646	0.027608931	0.88212657	358.0659	0	11.1875						156	10	3	NaN	NaN	NaN	0.0029037	1	15251	15251		82.96	62.512	1	11127			9183	2992	5343	5449	7223	7223		342			-0.10113477407139726
HPDVEVDGF	9	Unmodified	_HPDVEVDGF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.72998898315	2	507.729989	1013.44543	1.5589	0.00079149	-1.8633	-0.00094607	-0.30446	-0.00015458	507.72915931081883	20.67	0.3374	20.67	20.573	20.911	0	1353	52	0.8043377	0.031422377	0.8043377	326.5488	0	12.756989						361	15	3	NaN	NaN	NaN	0.094712	1	9105	9105		36.586	21.574	1	51108			9184	3450;8090	5344	5450	7224	7224					-0.0607598624151251
HPDVEVDGF	9	Unmodified	_HPDVEVDGF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4527014997001	1	1014.4527	1013.44543	1.5681	0.0015907	-2.6223	-0.0026602	-1.0542	-0.0010694	1014.4500276211336	20.646	0.16875	20.632	20.584	20.752	-0.014086	276	58	1.4553556	0.033803344	1.4538362	295.43	0	6.861908						149	8	2	NaN	NaN	NaN	0.062072	1	8928	8928		41.785	22.5	1	9140.6			9185	3450;8090	5344	5450	7225	7225					-0.0607598624151251
HPDVEVDGF	9	Unmodified	_HPDVEVDGF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.72998898315	2	507.729989	1013.44543	0.92134	0.00046779	-0.83993	-0.00042646	0.081413	4.1336E-05	507.7294439487159	20.67	0.21696	20.656	20.559	20.776	-0.014086	1353	58	0.8043377	0.03511536	0.80281824	326.5488	0	14.256287						271	10	3	NaN	NaN	NaN	0.056143	1	8929	8929		44.302	19.74	1	41417			9186	3450;8090	5344	5450	7226	7226					-0.0607598624151251
HPDVLPFAL	9	Unmodified	_HPDVLPFAL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.77928489945003	2	504.779285	1007.54402	1.5378	0.00077624	-0.35844	-0.00018093	1.1793	0.00059531	504.77946279018147	28.967	0.28963	28.967	28.846	29.136	0	1335	97	0.8154261	0.05904883	0.8154261	331.0765	0	23.974823						399	13	3	NaN	NaN	NaN	0.078597	1	8896	8896		38.918	18.362	1	36703			9187	1858	5345	5451	7227	7227					0.04054661794191361
HPDVLPFAL	9	Unmodified	_HPDVLPFAL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.77928489945003	2	504.779285	1007.54402	0.97501	0.00049216	0.52145	0.00026322	1.4965	0.00075538	504.77958091833784	28.99	0.24132	28.982	28.91	29.151	-0.0077229	1299	94	0.8375814	0.05720669	0.83606195	340.0719	0	23.226868						440	11	3	NaN	NaN	NaN	0.094712	1	8726	8726		36.586	17.468	1	41099			9188	1858	5345	5451	7228	7228					0.04054661794191361
HPDVLTIML	9	Unmodified	_HPDVLTIML_					0	0	0		LRP5-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;LRP5-CLPB|2|fusion;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	LRP5-CLPB|1|fusion	LRP5-CLPB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7862526518	2	519.786253	1037.55795	1.5159	0.00078793	-3.1693	-0.0016474	-1.6534	-0.00085943	519.783963972199	28.894	0.096533	28.894	28.87	28.967	0	1281	46	0.84864825	0.027653694	0.84864825	344.43094	0	11.22348						79	5	2	NaN	NaN	NaN	0.45297	1	10110	10110		11.548	2.4253	1	6424.2			9189	4119	5346	5452	7229	7229					0.040675712309621304
HPDVTEAML	9	Unmodified	_HPDVTEAML_					0	0	0		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.7420421133999	2	506.742042	1011.46953	1.5184	0.00076945	-1.5335	-0.00077707	-0.015028	-7.6153E-06	506.7409540929262	20.405	0.24037	20.405	20.309	20.549	0	1335	40	0.8154261	0.024015844	0.8154261	331.0592	0	9.750305						207	11	3	NaN	NaN	NaN	0.02781	1	9024	9024		61.977	35.245	1	19888			9190	1298	5347	5453	7230	7230					-0.0357446907951271
HPDVTEAML	9	Unmodified	_HPDVTEAML_					0	0	0		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7420421133999	2	506.742042	1011.46953	1.2028	0.00060952	0.37412	0.00018958	1.5769	0.00079911	507.24384939833953	20.405	0.19261	20.391	20.295	20.487	-0.014141	1338	52	0.81357855	0.031401932	0.8120591	330.30908	0	12.749054						171	9	3	NaN	NaN	NaN	0.03623	1	8853	8853		52.758	27.006	1	13895			9191	1298	5347	5453	7231	7231					-0.0357446907951271
HPDVTEAML	9	Oxidation (M)	_HPDVTEAM(Oxidation (M))L_		HPDVTEAM(1)L		HPDVTEAM(53)L	0	0	1		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.73949942445	2	514.739499	1027.46445	1.5715	0.0008089	-0.15475	-7.9654E-05	1.4167	0.00072924	514.7391492818665	17.378	0.096035	17.364	17.292	17.388	-0.013569	1332	64	0.8172735	0.038773835	0.81575406	331.73987	0	15.7387085						124	5	2	NaN	NaN	NaN	0.03623	1	9460	9460		52.758	24.092	1	14229			9192	1298	5347	5454	7232	7232		143			-0.04818772942144278
HPDVVSVIL	9	Unmodified	_HPDVVSVIL_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5618580186002	1	978.561858	977.554582	2.1469	0.0021009	-2.3034	-0.002254	-0.15647	-0.00015312	978.559796663785	25.467	0.14477	25.467	25.395	25.539	0	234	46	1.4802408	0.02664435	1.4802408	300.6296	0	5.4113464						103	7	2	NaN	NaN	NaN	0.14301	1	7827	7827		29.598	16.135	1	6946.6			9193	5431	5348	5455	7233	7233					0.06490644448626881
HPDVVSVIL	9	Unmodified	_HPDVVSVIL_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.7845672426001	2	489.784567	977.554582	2.0473	0.0010028	-1.74	-0.00085223	0.30732	0.00015052	489.7838685429633	25.443	0.24125	25.443	25.371	25.612	0	1308	61	0.83204526	0.03692949	0.83204526	337.96375	0	15.000183						238	11	3	NaN	NaN	NaN	0.02781	1	7828	7828		61.977	28.278	1	27372			9194	5431	5348	5455	7234	7234					0.06490644448626881
HPDVVSVIL	9	Unmodified	_HPDVVSVIL_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.7845672426001	2	489.784567	977.554582	1.5858	0.00077671	-0.98493	-0.00048241	0.60088	0.0002943	489.7842687908001	25.467	0.21717	25.455	25.382	25.6	-0.012011	1308	46	0.83204526	0.027686596	0.8305259	337.96375	0	11.24585						194	10	3	NaN	NaN	NaN	0.056143	1	7666	7666		44.302	12.741	1	25557			9195	5431	5348	5455	7235	7235					0.06490644448626881
HPDYAEYIF	9	Unmodified	_HPDYAEYIF_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.76128911155	2	577.761289	1153.50803	2.0903	0.0012077	-2.9177	-0.0016857	-0.82743	-0.00047806	578.260475677334	25.467	0.2654	25.467	25.419	25.684	0	1230	52	0.8799654	0.031286716	0.8799654	356.67075	0	12.681213						275	12	3	NaN	NaN	NaN	0.16939	1	14908	14908		38.918	18.362	1	35747			9196	1296	5349	5456	7236	7236					-0.06258840173336466
HPDYAEYIF	9	Unmodified	_HPDYAEYIF_					0	0	0		ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.76128911155	2	577.761289	1153.50803	1.8364	0.001061	0.071045	4.1047E-05	1.9075	0.0011021	577.7614019739536	25.539	0.31363	25.528	25.383	25.696	-0.0116	1233	49	0.87812483	0.029451072	0.8766054	355.9247	0	11.937225						215	14	2	NaN	NaN	NaN	0.11656	1	14415	14415		38.918	10.251	1	34622			9197	1296	5349	5456	7237	7237					-0.06258840173336466
HPDYEEYINL	10	Unmodified	_HPDYEEYINL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENST00000407916.2_1_7:55002243-55002453:+|nuORF;ARHGAP5|p.L350Cfs*4|1|0.27|ENSG00000100852|chr14:32091715-32091715|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.7933175214501	2	646.793318	1291.57208	1.5804	0.0010222	-1.8825	-0.0012176	-0.30218	-0.00019545	646.7917253160629	24.478	0.1688	24.478	24.381	24.55	0	1146	82	0.93142134	0.049556673	0.93142134	377.0499	0	20.061096						392	8	3	NaN	NaN	NaN	0.070973	1	18610	18610		49.961	26.844	1	56938			9198	1279	5350	5457	7238	7238					-0.062041048070341276
HPDYEEYINL	10	Unmodified	_HPDYEEYINL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENST00000407916.2_1_7:55002243-55002453:+|nuORF;ARHGAP5|p.L350Cfs*4|1|0.27|ENSG00000100852|chr14:32091715-32091715|T/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.7933175214501	2	646.793318	1291.57208	1.591	0.001029	-0.50506	-0.00032667	1.0859	0.00070238	646.7928393162069	24.478	0.28948	24.465	24.393	24.682	-0.012747	1146	91	0.93142134	0.05505407	0.9299019	377.0499	0	22.286499						502	13	3	NaN	NaN	NaN	0.088985	1	17782	17782		47.482	25.631	1	61347			9199	1279	5350	5457	7239	7239					-0.062041048070341276
HPDYGSHIQAL	11	Unmodified	_HPDYGSHIQAL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3016440800502	2	619.301644	1236.58874	1.5572	0.00096438	-0.92831	-0.0005749	0.6289	0.00038948	619.3013036548917	16.782	0.23976	16.782	16.71	16.949	0	1167	58	0.91857195	0.034880698	0.91857195	372.02322	0	14.12677						379	11	4	NaN	NaN	NaN	0.062807	1	17439	17439		46.588	14.135	1	61452			9200	2299	5351	5458	7240	7240					-0.02009559130397065
HPDYGSHIQAL	11	Unmodified	_HPDYGSHIQAL_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3016440800502	2	619.301644	1236.58874	1.2598	0.00078022	-0.064727	-4.0086E-05	1.1951	0.00074013	619.3019345428362	16.874	0.19174	16.861	16.765	16.957	-0.013294	1167	55	0.91857195	0.03305024	0.9170525	372.02322	0	13.385437						325	9	3	NaN	NaN	NaN	0.007231	1	16712	16712		71.985	31.028	1	65098			9201	2299	5351	5458	7241	7241					-0.02009559130397065
HPDYSFGEL	9	Unmodified	_HPDYSFGEL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.7378140152501	2	532.737814	1063.46108	0.88937	0.0004738	0.86543	0.00046105	1.7548	0.00093485	532.737781819054	22.573	0.28947	22.559	22.462	22.752	-0.01354	1272	70	0.854179	0.042411506	0.8526596	346.565	0	17.20758						341	13	2	NaN	NaN	NaN	0.12945	1	11003	11003		31.561	9.7261	1	55490			9202	4274	5352	5459	7242	7242					-0.06811699724448772
HPDYSVVL	8	Unmodified	_HPDYSVVL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.23999256345	2	465.239993	928.465432	0.96864	0.00045065	-2.0069	-0.00093367	-1.0382	-0.00048302	465.2390468281167	21.344	0.12034	21.344	21.344	21.464	0	1359	37	0.8006399	0.022191346	0.8006399	325.4458	0	9.020355						86	6	2	NaN	NaN	NaN	0.27293	1	6555	6555		44.247	29.071	1	7270.2		+	9203	192	5353	5460	7243	7243					-0.0016619051090174253
HPDYSVVL	8	Unmodified	_HPDYSVVL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4727086603001	1	929.472709	928.465432	1.7966	0.0016699	-1.2008	-0.0011161	0.59579	0.00055377	929.4720533899783	21.344	0.24074	21.344	21.224	21.464	0	297	58	1.4428991	0.03382492	1.4428991	293.261	0	6.8747253						182	11	2	NaN	NaN	NaN	0.23746	1	6556	6556		47.04	23.19	1	15104		+	9204	192	5353	5460	7244	7244					-0.0016619051090174253
HPDYSVVL	8	Unmodified	_HPDYSVVL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.23999256345	2	465.239993	928.465432	0.9137	0.00042509	-0.14796	-6.8837E-05	0.76574	0.00035625	465.23975685864036	21.296	0.072243	21.296	21.224	21.296	0	1359	34	0.8006399	0.020338774	0.8006399	325.4458	0	8.267303						61	4	2	NaN	NaN	NaN	0.27293	1	6557	6557		44.247	29.234	1	6814.4		+	9205	192	5353	5460	7245	7245					-0.0016619051090174253
HPDYSVVL	8	Unmodified	_HPDYSVVL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.23999256345	2	465.239993	928.465432	0.6852	0.00031878	-1.6015	-0.0007451	-0.91634	-0.00042632	465.2384387201377	21.32	0.16831	21.306	21.234	21.402	-0.014006	1362	34	0.79879075	0.02034092	0.7972713	324.69415	0	8.268219						103	8	3	NaN	NaN	NaN	0.35933	1	6427	6427		38.608	22.191	1	8624.7		+	9206	192	5353	5460	7246	7246					-0.0016619051090174253
HPDYSVVL	8	Unmodified	_HPDYSVVL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4727086603001	1	929.472709	928.465432	1.1097	0.0010314	-0.62589	-0.00058175	0.4838	0.00044968	929.4719690052767	21.344	0.26461	21.33	21.21	21.475	-0.014006	294	58	1.4446791	0.033828497	1.4431597	293.62277	0	6.875458						220	12	2	NaN	NaN	NaN	0.078841	1	6428	6428		69.745	41.078	1	18810		+	9207	192	5353	5460	7247	7247					-0.0016619051090174253
HPDYSVVLL	9	Unmodified	_HPDYSVVLL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7820245536501	2	521.782025	1041.5495	1.9874	0.001037	-1.5739	-0.00082122	0.4135	0.00021576	521.7809293622909	25.612	0.24125	25.612	25.491	25.732	0	1272	46	0.854179	0.027650714	0.854179	346.65823	0	11.22171						278	11	3	NaN	NaN	NaN	0.056143	1	10282	10282		44.302	22.467	1	41868		+	9208	192	5354	5461	7248	7248					0.030383405859993218
HPDYSVVLL	9	Unmodified	_HPDYSVVLL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7820245536501	2	521.782025	1041.5495	1.9459	0.0010153	0.10632	5.5477E-05	2.0522	0.0010708	522.2833979212896	25.636	0.21714	25.624	25.503	25.721	-0.0116	1272	58	0.854179	0.03502047	0.8526596	346.6582	0	14.2126465						199	10	2	NaN	NaN	NaN	0.078597	1	10076	10076		38.918	9.3195	1	29404		+	9209	192	5354	5461	7249	7249					0.030383405859993218
HPEASIQAVF	10	Unmodified	_HPEASIQAVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7825558699	2	549.782556	1097.55056	1.4406	0.00079201	-2.6706	-0.0014682	-1.23	-0.00067622	549.7813156590763	22.356	0.12057	22.356	22.308	22.429	0	1269	55	0.8560222	0.03316474	0.8560222	347.1749	0	13.450531						168	6	3	NaN	NaN	NaN	0.19179	1	12747	12747		36.235	19.818	1	23243			9210	627	5355	5462	7250	7250					0.005685549548843483
HPEASIQAVF	10	Unmodified	_HPEASIQAVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7825558699	2	549.782556	1097.55056	1.1717	0.00064415	-1.2499	-0.0006872	-0.078291	-4.3043E-05	549.7815250662136	22.38	0.14431	22.366	22.318	22.462	-0.013733	1266	61	0.85786515	0.036849678	0.8563457	347.92236	0	14.945038						174	7	2	NaN	NaN	NaN	0.19179	1	12414	12414		36.235	18.436	1	25066			9211	627	5355	5462	7251	7251					0.005685549548843483
HPEDLQAANRL	11	Unmodified	_HPEDLQAANRL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3256504926001	2	632.32565	1262.63675	1.582	0.0010004	-1.6008	-0.0010122	-0.018802	-1.1889E-05	632.3251927844035	15.198	0.14414	15.198	15.174	15.318	0	1152	37	0.92775106	0.022023976	0.92775106	375.6552	0	8.917725						96	7	2	NaN	NaN	NaN	0.17797	1	18058	18058		32.377	21.206	1	7251.3			9212	1436	5356	5463	7252	7252					0.015935147896016133
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7327286373501	2	512.732729	1023.4509	2.8697	0.0014714	-2.1595	-0.0011072	0.71016	0.00036412	512.7315264591974	18.724	0.35994	18.724	18.604	18.964	0	1326	64	0.8209676	0.03878224	0.8209676	333.25665	0	15.74292						854	16	5	NaN	NaN	NaN	0.023074	1	9483	9483		68.108	39.442	1	389620			9213	4065	5357	5464	7253	7253					-0.05988307449695185
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4581808081	1	1024.45818	1023.4509	2.8897	0.0029604	-1.1675	-0.0011961	1.7222	0.0017643	1024.4568325004375	18.7	0.31189	18.7	18.628	18.94	0	297	112	1.4428991	0.06580663	1.4428991	292.86295	0	13.356659						675	14	2	NaN	NaN	NaN	0.0094682	1	9484	9484		93.472	61.911	1	87547			9214	4065	5357	5464	7254	7254					-0.05988307449695185
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7327286373501	2	512.732729	1023.4509	2.0374	0.0010447	-1.7681	-0.00090657	0.26933	0.00013809	512.7319965597089	18.77	0.36016	18.756	18.612	18.972	-0.014059	1326	73	0.8209676	0.044315398	0.81944823	333.25665	0	17.989014						730	16	4	NaN	NaN	NaN	0.056143	1	9296	9296		44.302	15.636	1	389920			9215	4065	5357	5464	7255	7255					-0.05988307449695185
HPEEGDLDL	9	Unmodified	_HPEEGDLDL_					0	0	0		nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;nc|ENSG00000160633|Q15424-2|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424|SAFB	nc|ENSG00000160633|Q15424|SAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.4581808081	1	1024.45818	1023.4509	2.0378	0.0020876	-0.53409	-0.00054715	1.5037	0.0015405	1024.457319900792	18.77	0.31215	18.756	18.636	18.948	-0.014059	297	103	1.4428991	0.060474157	1.4413797	292.86295	0	12.274353						602	14	2	NaN	NaN	NaN	0.0072287	1	9297	9297		98.041	69.374	1	84788			9216	4065	5357	5464	7256	7256					-0.05988307449695185
HPEFGQVL	8	Unmodified	_HPEFGQVL_					0	0	0		nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L	nc|ENSG00000085415|Q96EE3|SEH1L	nc|ENSG00000085415|Q96EE3|SEH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.74015973895	2	463.74016	925.465767	0.59977	0.00027814	0.13963	6.4753E-05	0.73941	0.00034289	463.7402385951025	20.815	0.14447	20.801	20.752	20.897	-0.014088	1365	37	0.7969414	0.022191346	0.79542196	323.9577	0	9.020782						82	7	2	NaN	NaN	NaN	0.57691	1	6374	6374		26.732	1.7706	1	5861.2			9217	968	5358	5465	7257	7257					5.229208954915521E-05
HPEHAFYEF	9	Unmodified	_HPEHAFYEF_					0	0	0		ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;ENSG00000150457|ENST00000382592|LATS2	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7590807736	2	588.759081	1175.50361	1.7991	0.0010592	1.7399	0.0010244	3.5389	0.0020836	588.7605272886138	19.684	0.14406	19.684	19.612	19.756	0	1212	49	0.8910048	0.029431999	0.8910048	361.0654	0	11.926849						125	7	3	NaN	NaN	NaN	0.25448	1	15652	15652		21.835	11.23	1	11356			9218	2688	5359	5466	7258	7258					-0.07712304596248032
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.29784179334996	2	504.297842	1006.58113	2.4125	0.0012166	-1.0803	-0.00054478	1.3322	0.00067184	504.29723269478217	16.806	0.43186	16.806	16.734	17.165	0	1224	130	0.883646	0.07922262	0.883646	358.7795	0	32.166107						1242	19	5	NaN	NaN	NaN	0.022185	1	8856	8856		69.233	21.751	1	750570			9219	4356	5360	5467	7259	7259					0.0781033333993264
HPEKLATVL	9	Unmodified	_HPEKLATVL_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.29784179334996	2	504.297842	1006.58113	2.2966	0.0011582	-0.87476	-0.00044114	1.4218	0.00071702	504.2974013177653	16.994	0.40774	16.981	16.837	17.245	-0.013294	1224	133	0.883646	0.08106941	0.88212657	358.7795	0	32.915924						1344	18	5	NaN	NaN	NaN	0.028569	1	8683	8683		60.984	37.649	1	844110			9220	4356	5360	5467	7260	7260					0.0781033333993264
HPEKQFSTDVL	11	Unmodified	_HPEKQFSTDVL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.830234344	2	650.830234	1299.64592	1.8596	0.0012103	-2.0103	-0.0013083	-0.15064	-9.8038E-05	650.8292623685429	17.645	0.19177	17.645	17.597	17.789	0	1137	40	0.9369253	0.023847759	0.9369253	379.25302	0	9.653198						110	9	2	NaN	NaN	NaN	0.65755	1	18772	18772		10.244	2.6561	1	10524			9221	2241	5361	5468	7261	7261					0.008078633552713654
HPEKQFSTDVL	11	Unmodified	_HPEKQFSTDVL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.830234344	2	650.830234	1299.64592	1.6062	0.0010453	-1.6222	-0.0010558	-0.016054	-1.0449E-05	650.8297523468725	17.738	0.16779	17.724	17.652	17.82	-0.013786	1137	37	0.9369253	0.022012115	0.93540585	379.25302	0	8.910156						121	8	2	NaN	NaN	NaN	0.40068	1	17945	17945		22.026	5.7999	1	12921			9222	2241	5361	5468	7262	7262					0.008078633552713654
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3720693689501	2	694.372069	1386.72959	1.6369	0.0011366	-4.4469	-0.0030878	-2.81	-0.0019512	694.3693410678417	28.074	0.3137	28.074	28.074	28.388	0	1056	52	0.9863805	0.031088114	0.9863805	399.00793	0	12.575684						221	14	3	NaN	NaN	NaN	0.4078	1	19949	19949		21.771	15.341	1	17943			9223	7828;7829	5362	5469	7263	7263					0.05169019522986673
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3720693689501	2	694.372069	1386.72959	1.4908	0.0010352	-3.8619	-0.0026816	-2.3711	-0.0016464	694.3686610467178	27.905	0.12065	27.905	27.808	27.929	0	1056	52	0.9863805	0.031088114	0.9863805	399.0079	0	12.575684						125	6	2	NaN	NaN	NaN	0.7072	1	19951	19951		6.9844	0.55443	1	12330			9224	7828;7829	5362	5469	7264	7264					0.05169019522986673
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.25047173483335	3	463.250472	1386.72959	0.86233	0.00039948	-1.9092	-0.00088445	-1.0469	-0.00048498	463.2497243878257	27.471	0.21723	27.471	27.422	27.639	0	1362	58	0.79879075	0.03514576	0.79879075	484.68347	0	21.32544						242	10	3	NaN	NaN	NaN	0.48069	1	19953	19953		22.026	15.218	1	27842			9225	7828;7829	5362	5469	7265	7265					0.05169019522986673
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3720693689501	2	694.372069	1386.72959	1.7053	0.0011841	-1.4265	-0.00099054	0.27874	0.00019355	694.3710240290058	27.471	0.38612	27.471	27.398	27.784	0	1056	91	0.9863805	0.054834902	0.9863805	399.0079	0	22.181671						961	17	5	NaN	NaN	NaN	1.2479E-16	1	19954	19954		128.29	96.619	1	314870			9226	7828;7829	5362	5469	7266	7266					0.05169019522986673
HPELEHIIWTL	11	Unmodified	_HPELEHIIWTL_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3720693689501	2	694.372069	1386.72959	1.3319	0.00092483	-2.2047	-0.0015309	-0.87285	-0.00060608	694.3702879209015	27.759	0.57919	27.75	27.557	28.136	-0.009552	1053	76	0.9882094	0.04570812	0.98669	399.74774	0	18.489685						1204	25	3	NaN	NaN	NaN	0.0040393	1	19024	19024		75.089	49.408	1	363860			9227	7828;7829	5362	5469	7267	7267					0.05169019522986673
HPELEQYRL	9	Unmodified	_HPELEQYRL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.80656228245	2	592.806562	1183.59857	1.8252	0.001082	-2.7304	-0.0016186	-0.90523	-0.00053663	592.8056198123882	17.957	0.1679	17.957	17.933	18.101	0	1197	40	0.9001988	0.023894131	0.9001988	364.7622	0	9.681915						161	8	3	NaN	NaN	NaN	0.19268	1	15965	15965		25.801	9.2168	1	17972			9228	5649;5713	5363	5470	7268	7268					0.01411628874939197
HPELEQYRL	9	Unmodified	_HPELEQYRL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.80656228245	2	592.806562	1183.59857	1.5901	0.00094261	-2.2286	-0.0013211	-0.63852	-0.00037852	592.8063652324402	18.098	0.16804	18.084	17.988	18.156	-0.013786	1197	52	0.9001988	0.031242788	0.8986794	364.7622	0	12.659607						201	8	3	NaN	NaN	NaN	0.10945	1	15356	15356		34.454	10.054	1	21739			9229	5649;5713	5363	5470	7269	7269					0.01411628874939197
HPENAAEIKL	10	Unmodified	_HPENAAEIKL_					0	0	0		ENST00000580060.1_1_18:47022337-47022472:-|nuORF;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	ENST00000580060.1_1_18:47022337-47022472:-|nuORF	ENST00000580060.1_1_18:47022337-47022472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3011127638	2	561.301113	1120.58767	1.7963	0.0010083	-3.458	-0.001941	-1.6617	-0.00093272	561.2986286262023	16.134	0.16799	16.134	16.086	16.254	0	1230	55	0.8799654	0.03313607	0.8799654	356.79453	0	13.435486						182	8	3	NaN	NaN	NaN	0.05475	1	13708	13708		52.195	14.892	1	24798			9230	4959	5364	5471	7270	7270					0.03220226500661738
HPEPTERVVVF	11	Unmodified	_HPEPTERVVVF_					0	0	0		nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;GRHL1|p.D245*|1|0.26|ENSG00000134317|chr2:9962512-9962513|-/T|frameshift_variant;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	nc|ENSG00000134317|Q9NZI5-3|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.34859427265	2	655.348594	1308.68264	1.6494	0.0010809	-0.95308	-0.0006246	0.69633	0.00045634	655.3481019830385	19.372	0.28793	19.372	19.324	19.612	0	1122	76	0.9460945	0.04585117	0.9460945	382.93677	0	18.558502						734	13	4	NaN	NaN	NaN	0.0099716	1	18911	18911		69.32	45.985	1	186030			9231	2864	5365	5472	7271	7271					0.04064159971835579
HPEPTERVVVF	11	Unmodified	_HPEPTERVVVF_					0	0	0		nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;GRHL1|p.D245*|1|0.26|ENSG00000134317|chr2:9962512-9962513|-/T|frameshift_variant;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	nc|ENSG00000134317|Q9NZI5-3|GRHL1	nc|ENSG00000134317|Q9NZI5-3|GRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.34859427265	2	655.348594	1308.68264	1.4296	0.0009369	-2.3709	-0.0015538	-0.9413	-0.00061688	655.3468939786583	19.49	0.26473	19.476	19.38	19.645	-0.014141	1122	79	0.9460945	0.04768777	0.9445751	382.93677	0	19.30188						732	12	4	NaN	NaN	NaN	0.0068474	1	18077	18077		72.358	42.76	1	183440			9232	2864	5365	5472	7272	7272					0.04064159971835579
HPERWDVSF	9	Unmodified	_HPERWDVSF_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.777804843	2	586.777805	1171.54106	1.8903	0.0011092	-2.6001	-0.0015257	-0.70979	-0.00041649	586.7758661705883	20.117	0.19221	20.117	20.045	20.237	0	1224	97	0.883646	0.058902204	0.883646	358.09744	0	23.870117						437	9	3	NaN	NaN	NaN	0.19268	1	15534	15534		25.801	5.3523	1	53408			9233	1997	5366	5473	7273	7273					-0.03785213330638726
HPERWDVSF	9	Unmodified	_HPERWDVSF_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A409Qfs*15|1|0.06|ENSG00000115207|chr2:27336328-27336328|C/-|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.777804843	2	586.777805	1171.54106	1.441	0.00084554	-4.6168	-0.002709	-3.1758	-0.0018635	586.7751924617578	20.261	0.28897	20.246	20.126	20.415	-0.014141	1224	103	0.883646	0.06257683	0.88212657	358.09744	0	25.359222						421	13	3	NaN	NaN	NaN	0.054111	1	14988	14988		45.165	16.498	1	54321			9234	1997	5366	5473	7274	7274					-0.03785213330638726
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2558479804001	2	543.255848	1084.49714	1.8244	0.00099111	-2.2171	-0.0012044	-0.39266	-0.00021332	543.2551700268066	13.276	0.31223	13.276	13.228	13.541	0	1299	82	0.8375814	0.04978746	0.8375814	339.7466	0	20.19519						517	14	4	NaN	NaN	NaN	0.084037	1	12154	12154		38.131	14.796	1	105390			9235	2015	5367	5474	7275	7275					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2558479804001	2	543.255848	1084.49714	1.4279	0.00077574	-1.7168	-0.00093267	-0.28886	-0.00015693	543.255109485863	13.325	0.28784	13.315	13.243	13.531	-0.010098	1296	73	0.8394264	0.04425788	0.83790696	340.495	0	17.95224						493	13	4	NaN	NaN	NaN	0.16939	1	11838	11838		27.296	8.1326	1	108390			9236	2015	5367	5474	7276	7276					-0.041725658192717674
HPESERISM	9	Oxidation (M)	_HPESERISM(Oxidation (M))_		HPESERISM(1)		HPESERISM(53)	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.25330529145	2	551.253305	1100.49206	1.6075	0.00088612	-1.2663	-0.00069806	0.34115	0.00018806	551.2527880008003	11.19	0.38382	11.183	11.087	11.471	-0.0071888	1314	58	0.8283535	0.035077274	0.8268341	335.94226	0	14.225739						598	17	4	NaN	NaN	NaN	0.03533	1	12521	12521		53.14	25.351	1	142990			9237	2015	5367	5475	7277	7277		226			-0.054168696818805984
HPESHVLVL	9	Unmodified	_HPESHVLVL_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7876412478	2	515.787641	1029.56073	2.3528	0.0012135	-1.6807	-0.0008669	0.67204	0.00034663	515.7863159431205	17.981	0.14394	17.981	17.933	18.077	0	1260	40	0.8615505	0.023950994	0.8615505	349.70297	0	9.72168						150	7	3	NaN	NaN	NaN	0.12945	1	9766	9766		31.561	18.558	1	28396			9238	2563	5368	5476	7278	7278					0.04713162680127425
HPESHVLVL	9	Unmodified	_HPESHVLVL_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7876412478	2	515.787641	1029.56073	1.9006	0.00098033	-1.7634	-0.00090954	0.13725	7.079E-05	515.7867322564048	18.17	0.23992	18.156	18.06	18.3	-0.01395	1260	40	0.8615505	0.023950994	0.8600311	349.70297	0	9.72168						207	11	3	NaN	NaN	NaN	0.03623	1	9570	9570		52.758	23.863	1	37104			9239	2563	5368	5476	7279	7279					0.04713162680127425
HPEVAPDVRL	10	Unmodified	_HPEVAPDVRL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.8091049714001	2	566.809105	1131.60366	1.939	0.001099	-1.6928	-0.00095951	0.24614	0.00013952	566.8087840104621	18.29	0.11992	18.276	18.204	18.324	-0.01395	1221	49	0.885486	0.029438376	0.88396657	358.99045	0	11.934784						119	6	2	NaN	NaN	NaN	0.65008	1	13706	13706		10.244	5.5146	1	20207			9240	3067	5369	5477	7280	7280					0.04311932737573443
HPEVAPDVRL	10	Unmodified						0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.809105	1131.60366	2.3309	0.0013211	-2.9249	-0.0016579	-0.59405	-0.00033671	566.807500625709	18.197	0.095915	18.197	18.173	18.268	0	1227	46	0.88180584	0.02759999	0.88180584	357.49844		11.189453	-0.039501	-0.00067019	-0.0010804	NaN	10.244	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15174			9241	3067	5369	5477							0.04311932737573443
HPEYEERFL	9	Unmodified	_HPEYEERFL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.29074504275	2	610.290745	1218.56694	1.7304	0.001056	-1.1566	-0.00070588	0.57375	0.00035016	610.2901850909574	18.316	0.19194	18.316	18.268	18.46	0	1179	52	0.9112251	0.031232655	0.9112251	369.10797	0	12.651337						193	9	3	NaN	NaN	NaN	0.12104	1	16943	16943		32.778	12.223	1	18852			9242	4171	5370	5478	7281	7281					-0.0336036387900549
HPEYEERFL	9	Unmodified	_HPEYEERFL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.29074504275	2	610.290745	1218.56694	1.5287	0.00093295	-0.58202	-0.0003552	0.94668	0.00057775	610.2900584165047	18.434	0.14411	18.42	18.348	18.492	-0.01395	1179	55	0.9112251	0.033071637	0.90970564	369.10797	0	13.396271						144	7	3	NaN	NaN	NaN	0.40649	1	16262	16262		13.463	3.1029	1	14634			9243	4171	5370	5478	7282	7282					-0.0336036387900549
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENSG00000173812|ENST00000469257|EIF1;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000114784|ENST00000232905|EIF1B	ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8009455883001	2	592.800946	1183.58734	2.2616	0.0013407	-0.72004	-0.00042684	1.5415	0.00091383	592.8011608789794	23.224	0.40997	23.224	23.079	23.489	0	1197	106	0.9001988	0.06435126	0.9001988	364.76224	0	26.075226						979	18	5	NaN	NaN	NaN	0.0010171	1	15960	15960		89.256	44.953	1	497560			9244	4909	5371	5479	7283	7283					0.002888067808271444
HPEYGEVIQL	10	Unmodified	_HPEYGEVIQL_					0	0	0		ENSG00000173812|ENST00000469257|EIF1;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF;ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000114784|ENST00000232905|EIF1B	ENSG00000173812|ENST00000469257|EIF1	ENSG00000173812|ENST00000469257|EIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8009455883001	2	592.800946	1183.58734	1.9599	0.0011618	-1.717	-0.0010178	0.24286	0.00014397	592.8002794800731	23.272	0.2413	23.258	23.138	23.379	-0.013294	1197	109	0.9001988	0.06616485	0.8986794	364.76227	0	26.81012						724	11	5	NaN	NaN	NaN	0.0010171	1	15351	15351		89.256	36.476	1	477110			9245	4909	5371	5479	7284	7284					0.002888067808271444
HPEYQIRWLIL	11	Unmodified	_HPEYQIRWLIL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	734.4089861915	2	734.408986	1466.80342	1.3658	0.0010031	-3.7784	-0.0027749	-2.4126	-0.0017719	734.9070479989092	28.798	0.096563	28.798	28.774	28.87	0	1005	31	1.0174452	0.018256664	1.0174452	411.35226	0	7.3811646						72	5	2	NaN	NaN	NaN	0.69656	1	20458	20458		7.6826	2.2327	1	5742.5			9246	538	5372	5480	7285	7285					0.08868987685309548
HPFDHPVTI	9	Unmodified	_HPFDHPVTI_					0	0	0			REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5367059006	1	1062.53671	1061.52943	2.2895	0.0024326	-12.01	-0.012761	-9.7202	-0.010328	1062.5236209552038	25.732	0.12062	25.732	25.684	25.805	0	153	58	1.5281296	0.033649445	1.5281296	310.0141	0	6.8265076						191	6	3	NaN	NaN	NaN	0.078597	1	11175	11175		38.918	2.3314	1	18011	+		9247	11455	5373	5481	7286	7286					0.0011258964605076471
HPFDHPVTI	9	Unmodified						0	0	0			REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1062.53671	1061.52943	2.2895	0.0024326	-12.01	-0.012761	-9.7202	-0.010328	1062.5236209552038	25.732	0.12062	25.732	25.684	25.805	0	153	58	1.5281296	0.033649445	1.5281296	310.0141		6.8265076	-0.0061249	-0.00010033	-0.00012579	NaN	38.918	191	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18011	+		9248	11455	5373	5481							0.0011258964605076471
HPFDHPVTI	9	Unmodified						0	0	0			REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	REV__ENST00000215838.7_1_22:31011318-31011739:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1062.53671	1061.52943	2.0857	0.0022162	-11.819	-0.012558	-9.7332	-0.010342	1062.5236042011134	25.756	0.12068	25.745	25.696	25.817	-0.0116	150	58	1.5299006	0.033649445	1.5283811	310.37338		6.8265076	0.0061249	0.00010231	0.00012579	NaN	38.918	187	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16743	+		9249	11455	5373	5481							0.0011258964605076471
HPFEDGAKL	9	Unmodified	_HPFEDGAKL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;GAK|p.R270L|1|0.24|ENSG00000178950|chr4:893942-893942|C/A|missense_variant	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.2561739439	2	507.256174	1012.49779	1.658	0.00084105	-7.617	-0.0038637	-5.9589	-0.0030227	507.25142187099334	15.628	0.16786	15.616	15.592	15.76	-0.012201	1320	64	0.824661	0.038761258	0.8231416	334.80396	0	15.736664						142	8	2	NaN	NaN	NaN	0.2961	1	8898	8898		19.164	8.5586	1	14135			9250	5133	5374	5482	7287	7287					-0.007954031079066226
HPFFGRVVL	9	Unmodified	_HPFFGRVVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.3085438654001	2	536.308544	1070.60253	1.2649	0.00067836	1.019	0.00054652	2.2839	0.0012249	536.308405819185	22.886	0.36137	22.872	22.752	23.113	-0.01354	1221	52	0.885486	0.03128332	0.88396657	359.2365	0	12.691467						410	16	4	NaN	NaN	NaN	0.17818	1	11302	11302		26.732	3.614	1	66777			9251	2080	5375	5483	7288	7288					0.07005763159327216
HPFFGRVVL	9	Unmodified						0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.308544	1070.60253	2.0478	0.0010982	0.14714	7.8911E-05	2.1949	0.0011771	536.3087828323954	22.621	0.16889	22.621	22.573	22.742	0	1197	85	0.9001988	0.051489294	0.9001988	365.2054		20.888885	-0.12551	-0.00039094	0.0081161	NaN	26.732	297	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40246			9252	2080	5375	5483							0.07005763159327216
HPFFKDMSL	9	Unmodified	_HPFFKDMSL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2760521062501	2	561.276052	1120.53755	2.2796	0.0012795	-1.0207	-0.00057288	1.2589	0.00070659	561.2747700546558	22.043	0.55455	22.043	21.898	22.453	0	1182	124	0.9093879	0.075407326	0.9093879	368.72446	0	30.574982						1339	24	5	NaN	NaN	NaN	0.086719	1	13699	13699		48.65	14.952	1	386640			9253	1148	5376	5484	7289	7289					-0.017895994288437578
HPFFKDMSL	9	Unmodified	_HPFFKDMSL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2760521062501	2	561.276052	1120.53755	1.6273	0.00091335	-0.80085	-0.0004495	0.82642	0.00046385	561.2754556403743	22.211	0.43362	22.197	22.005	22.438	-0.013731	1182	109	0.9093879	0.0661934	0.90786844	368.72446	0	26.83908						971	19	5	NaN	NaN	NaN	0.042228	1	13295	13295		63.765	21.98	1	322690			9254	1148	5376	5484	7290	7290					-0.017895994288437578
HPFFKDMSL	9	Oxidation (M)	_HPFFKDM(Oxidation (M))SL_		HPFFKDM(1)SL		HPFFKDM(45)SL	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2735094173	2	569.273509	1136.53247	2.7401	0.0015599	-2.3084	-0.0013141	0.43166	0.00024573	569.2724672160991	18.173	0.45571	18.173	18.077	18.532	0	1185	97	0.90755045	0.058851242	0.90755045	367.91653	0	23.858002						1115	20	5	NaN	NaN	NaN	0.054111	1	14331	14331		45.165	8.5784	1	385430			9255	1148	5376	5485	7291	7291		125			-0.03033903291475326
HPFFKDMSL	9	Oxidation (M)	_HPFFKDM(Oxidation (M))SL_		HPFFKDM(1)SL		HPFFKDM(58)SL	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2735094173	2	569.273509	1136.53247	2.3767	0.001353	-1.8809	-0.0010707	0.49584	0.00028227	569.2729374667628	18.314	0.28804	18.3	18.18	18.468	-0.01395	1185	106	0.90755045	0.06437206	0.906031	367.91653	0	26.0961						924	13	6	NaN	NaN	NaN	0.030696	1	13859	13859		58.2	30.411	1	380020			9256	1148	5376	5485	7292	7292		125			-0.03033903291475326
HPFFNDFTF	9	Unmodified	_HPFFNDFTF_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.263998976	2	586.263999	1170.51345	1.8614	0.0010913	-0.80447	-0.00047163	1.057	0.00061966	586.2631729259342	29.087	0.28962	29.087	28.967	29.256	0	1209	85	0.892844	0.051489294	0.892844	361.8286	0	20.866241						674	13	4	NaN	NaN	NaN	0.18779	1	15498	15498		26.115	8.316	1	126930			9257	37	5377	5486	7293	7293					-0.06499116590862286
HPFFNDFTF	9	Unmodified	_HPFFNDFTF_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.263998976	2	586.263999	1170.51345	1.2969	0.0007603	-0.46331	-0.00027162	0.83356	0.00048868	586.2637148774342	29.111	0.31372	29.103	29.007	29.32	-0.0077209	1206	79	0.894683	0.047806323	0.89316356	362.57388	0	19.373688						583	14	3	NaN	NaN	NaN	0.12328	1	14956	14956		32.453	9.3352	1	122070			9258	37	5377	5486	7294	7294					-0.06499116590862286
HPFHILIAL	9	Unmodified	_HPFHILIAL_					0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8187444109501	2	530.818744	1059.62294	1.5877	0.00084277	0.31514	0.00016728	1.9028	0.0010101	530.8187745840917	26.77	0.19357	26.77	26.698	26.891	0	1209	64	0.892844	0.03861493	0.892844	362.2693	0	15.667908						220	9	3	NaN	NaN	NaN	0.16059	1	11089	11089		27.861	7.3473	1	35595			9259	2106	5378	5487	7295	7295					0.09550933819127749
HPFIKEYQA	9	Unmodified	_HPFIKEYQA_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7929235909501	2	566.792924	1131.57129	1.7369	0.00098448	-2.6141	-0.0014816	-0.87713	-0.00049715	566.7911865287145	15.198	0.19219	15.198	15.15	15.342	0	1179	52	0.9112251	0.031235993	0.9112251	369.42563	0	12.663605						180	9	3	NaN	NaN	NaN	0.12866	1	14151	14151		31.675	13.895	1	17518			9260	1556;7754	5379	5488	7296	7296					0.01077145334556917
HPFIKEYQA	9	Unmodified	_HPFIKEYQA_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7929235909501	2	566.792924	1131.57129	1.3485	0.00076432	-1.9372	-0.001098	-0.58874	-0.0003337	566.7917998547529	15.316	0.19187	15.304	15.232	15.424	-0.012202	1176	49	0.9130621	0.02939701	0.91154265	370.17038	0	11.91803						187	9	3	NaN	NaN	NaN	0.10945	1	13704	13704		34.454	10.604	1	18162			9261	1556;7754	5379	5488	7297	7297					0.01077145334556917
HPFLAIYEL	9	Unmodified	_HPFLAIYEL_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF;nc|ENSG00000129219|O14939-3|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.8002173068	2	551.800217	1101.58588	1.1304	0.00062377	-2.084	-0.00115	-0.95359	-0.00052619	551.7994636789489	29.136	0.16894	29.136	29.087	29.256	0	1236	58	0.876284	0.034971297	0.876284	355.3763	0	14.182556						188	8	3	NaN	NaN	NaN	0.29422	1	12914	12914		19.285	1.4857	1	27503			9262	2597	5380	5489	7298	7298					0.03915217482699518
HPFLAIYEL	9	Unmodified	_HPFLAIYEL_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF;nc|ENSG00000129219|O14939-3|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.8002173068	2	551.800217	1101.58588	1.0686	0.00058968	-1.7951	-0.00099052	-0.72643	-0.00040084	551.799060602111	29.159	0.16895	29.151	29.079	29.248	-0.0077209	1236	49	0.876284	0.02945429	0.8747646	355.3763	0	11.94516						206	8	3	NaN	NaN	NaN	0.08074	1	12579	12579		38.608	18.052	1	29364			9263	2597	5380	5489	7299	7299					0.03915217482699518
HPFRGSPAAGH	11	Unmodified	_HPFRGSPAAGH_					0	0	0		ENST00000520539.5_1_8:103424406-103424691:-|nuORF	ENST00000520539.5_1_8:103424406-103424691:-|nuORF	ENST00000520539.5_1_8:103424406-103424691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.5248179639667	3	378.524818	1132.55262	3.3105	0.0012531	0.18146	6.8688E-05	3.492	0.0013218	378.5242298021399	11.07	0.047879	11.063	11.039	11.087	-0.0071888	1524	25	0.698637	0.014881074	0.69711757	424.84937	0	9.049377						25	3	2	NaN	NaN	NaN	0.73455	1	13737	13737		2.0359	0	1	1378.5			9264	7393	5381	5490	7300	7300					-0.008349715166104943
HPGRGGGG	8	Unmodified	_HPGRGGGG_					0	0	0		ENST00000409223.1_1_2:239053546-239056508:+|nuORF	ENST00000409223.1_1_2:239053546-239056508:+|nuORF	ENST00000409223.1_1_2:239053546-239056508:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3379465134003	1	694.337947	693.33067	1.0435	0.00072451	1.31	0.00090959	2.3535	0.0016341	694.3386886598004	37.121	0.2411	37.121	37.048	37.29	0	651	55	1.2315145	0.032452106	1.2315145	251.53516	0	6.6282806						200	11	2	NaN	NaN	NaN	0.84887	1	3108	3108		0.32989	0	1	24347			9265	6856	5382	5491	7301	7301					-0.0282620614212874
HPGRGGGG	8	Unmodified	_HPGRGGGG_					0	0	0		ENST00000409223.1_1_2:239053546-239056508:+|nuORF	ENST00000409223.1_1_2:239053546-239056508:+|nuORF	ENST00000409223.1_1_2:239053546-239056508:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3379465134003	1	694.337947	693.33067	0.63411	0.00044029	2.1648	0.0015031	2.7989	0.0019434	694.3392807574774	35.048	0.21715	35.048	34.975	35.192	0	645	64	1.2351195	0.037858725	1.2351195	252.27147	0	7.7325897						194	10	2	NaN	NaN	NaN	0.84945	1	3109	3109		0	0	1	15711			9266	6856	5382	5491	7302	7302					-0.0282620614212874
HPHARARHR	9	Unmodified	_HPHARARHR_					0	0	0			REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF	REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3160888593001	2	569.316089	1136.61762	1.0714	0.00060998	-7.1537	-0.0040727	-6.0823	-0.0034627	569.312103125767	33.962	0.048264	33.962	33.962	34.01	0	1242	40	0.87260187	0.023935497	0.87260187	353.74823	0	9.703308						59	3	3	NaN	NaN	NaN	0.6762	1	14348	14348		1.2418	0	1	4965.6	+		9267	8771	5383	5492	7303	7303					0.054780677998678584
HPHAVNEIAL	10	Unmodified	_HPHAVNEIAL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.79599759615	2	550.795998	1099.57744	1.8051	0.00099423	-1.5581	-0.0008582	0.24696	0.00013602	550.7951863603398	17.141	0.28792	17.141	17.045	17.333	0	1239	85	0.87444305	0.051584005	0.87444305	354.6377	0	20.920288						428	13	4	NaN	NaN	NaN	0.051632	1	12834	12834		52.624	23.728	1	147470			9268	4104;3971	5384	5493	7304	7304					0.031636635660561296
HPHDLVILM	9	Unmodified	_HPHDLVILM_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.79186934595	2	537.791869	1073.56919	2.3122	0.0012435	-1.4236	-0.0007656	0.88861	0.00047789	537.7917046654271	22.983	0.096291	22.983	22.935	23.031	0	1233	91	0.87812483	0.055250645	0.87812483	356.23764	0	22.414093						237	5	4	NaN	NaN	NaN	0.049695	1	11720	11720		47.04	26.485	1	93892			9269	7900	5385	5494	7305	7305					0.03534393325094243
HPHDLVILM	9	Unmodified	_HPHDLVILM_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.79186934595	2	537.791869	1073.56919	1.7357	0.00093345	-4.7554	-0.0025574	-3.0197	-0.001624	537.7903780304674	23.151	0.28939	23.138	23.065	23.355	-0.013294	1236	112	0.876284	0.06813884	0.8747646	355.49088	0	27.642548						586	13	3	NaN	NaN	NaN	0.03623	1	11416	11416		52.758	26.027	1	151360			9270	7900	5385	5494	7306	7306					0.03534393325094243
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(59)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.789326657	2	545.789327	1089.5641	1.8166	0.00099146	-1.216	-0.00066369	0.60056	0.00032778	545.7890967048922	19.444	0.192	19.444	19.396	19.588	0	1233	94	0.87812483	0.05709541	0.87812483	356.1714	0	23.158142						512	9	5	NaN	NaN	NaN	0.030391	1	12378	12378		58.599	22.013	1	161100			9271	7900	5385	5495	7307	7307		640			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(68)	0	0	1		nc|ENSG00000052841|Q96AE7-2|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.789326657	2	545.789327	1089.5641	1.7386	0.00094891	-2.3025	-0.0012567	-0.56391	-0.00030778	545.7879186958742	19.587	0.28885	19.573	19.476	19.765	-0.014141	1236	76	0.876284	0.046029747	0.8747646	355.42474	0	18.66986						533	13	5	NaN	NaN	NaN	0.023074	1	12072	12072		68.108	18.275	1	148260			9272	7900	5385	5495	7308	7308		640			0.022900894624626744
HPHFLNADPVL	11	Unmodified	_HPHFLNADPVL_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.33020455425	2	630.330205	1258.64586	1.7408	0.0010973	-1.9827	-0.0012498	-0.24188	-0.00015246	630.3290803915002	22.019	0.14468	22.019	21.994	22.139	0	1107	34	0.9552588	0.020157099	0.9552588	386.8066	0	8.162079						112	7	3	NaN	NaN	NaN	0.37105	1	17971	17971		23.086	12.726	1	8729.7			9273	805	5386	5496	7309	7309					0.026879081459355803
HPHFLNADPVL	11	Unmodified	_HPHFLNADPVL_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.33020455425	2	630.330205	1258.64586	1.6768	0.0010569	-3.8658	-0.0024368	-2.189	-0.0013798	630.3286651309234	22.356	0.048136	22.342	22.342	22.39	-0.013731	1110	34	0.95342636	0.020157099	0.9519069	386.0646	0	8.162079						43	3	2	NaN	NaN	NaN	0.74155	1	17201	17201		4.7291	3.0269	1	3896.3			9274	805	5386	5496	7310	7310					0.026879081459355803
HPHGLEFLF	9	Unmodified	_HPHGLEFLF_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.78235890465	2	548.782359	1095.55016	1.973	0.0010827	-1.4435	-0.00079215	0.52949	0.00029057	548.7817516938401	25.853	0.28958	25.853	25.757	26.046	0	1209	97	0.892844	0.058902204	0.892844	362.11682	0	23.889343						614	13	4	NaN	NaN	NaN	0.042649	1	12648	12648		50.033	18.472	1	82749			9275	1345	5387	5497	7311	7311					0.006211800256778588
HPHGLEFLF	9	Unmodified	_HPHGLEFLF_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.78235890465	2	548.782359	1095.55016	1.7592	0.00096542	0.40082	0.00021996	2.16	0.0011854	549.2841257031165	26.287	0.24128	26.276	26.131	26.373	-0.011137	1206	103	0.894683	0.06257683	0.89316356	362.86267	0	25.3797						596	11	3	NaN	NaN	NaN	0.14945	1	12323	12323		28.667	0.8777	1	57743			9276	1345	5387	5497	7312	7312					0.006211800256778588
HPHIISIYEVF	11	Unmodified	_HPHIISIYEVF_					0	0	0		ENSG00000074590|ENST00000261402|NUAK1;nc|ENSG00000074590|O60285-2|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.86133750715	2	677.861338	1353.70812	1.2331	0.00083589	-1.2209	-0.00082757	0.012269	8.3166E-06	677.8606498302383	27.012	0.26543	27.012	26.964	27.229	0	1062	67	0.9827221	0.040259898	0.9827221	397.62372	0	16.289764						387	12	4	NaN	NaN	NaN	0.039017	1	19593	19593		52.624	40.885	1	46613			9277	822	5388	5498	7313	7313					0.045416344942623255
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.56316121656664	3	458.563161	1372.66765	1.2779	0.00058599	-2.2755	-0.0010435	-0.99761	-0.00045747	458.56297985506455	25.419	0.16889	25.419	25.298	25.467	0	1488	43	0.7209441	0.026002407	0.7209441	437.49252	0	15.779114						120	8	2	NaN	NaN	NaN	0.25335	1	19823	19823		19.904	13.763	1	9494.8			9278	2314	5389	5499	7314	7314					-0.0037728710549345124
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.34110359155	2	687.341104	1372.66765	2.2096	0.0015187	5.4077	0.0037169	7.6172	0.0052356	687.8487577399608	25.419	0.096512	25.419	25.395	25.491	0	1080	73	0.9717421	0.043938875	0.9717421	393.12616	0	17.775818						205	5	3	NaN	NaN	NaN	0.10634	1	19824	19824		39.039	26.469	1	22682			9279	2314	5389	5499	7315	7315					-0.0037728710549345124
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.34110359155	2	687.341104	1372.66765	2.0764	0.0014272	-0.54298	-0.00037321	1.5334	0.001054	687.3401407222345	25.66	0.096497	25.648	25.552	25.648	-0.011602	1083	64	0.9699114	0.038452744	0.96839195	392.38556	0	15.556366						122	5	3	NaN	NaN	NaN	0.58731	1	18888	18888		14.854	2.8053	1	11729			9280	2314	5389	5499	7316	7316					-0.0037728710549345124
HPHSWPWQVSL	11	Unmodified	_HPHSWPWQVSL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.34110359155	2	687.341104	1372.66765	2.1438	0.0014735	2.1128	0.0014522	4.2566	0.0029257	687.342947837319	25.708	0.072393	25.696	25.696	25.769	-0.0116	1080	61	0.9717421	0.03662759	0.97022265	393.12616	0	14.817993						103	4	2	NaN	NaN	NaN	0.63477	1	18889	18889		11.739	0.77375	1	11523			9281	2314	5389	5499	7317	7317					-0.0037728710549345124
HPHSWPWQVSL	11	Unmodified						0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	458.563161	1372.66765	2.2345	0.0010247	2.1017	0.00096378	4.3363	0.0019885	458.5649961099461	25.732	0.096535	25.721	25.696	25.793	-0.0116	1485	40	0.72280174	0.024146438	0.7212823	438.61975		14.652832	0.15088	0.003543	0.00016909	NaN	19.904	55	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3789.9			9282	2314	5389	5499							-0.0037728710549345124
HPIEIARQL	9	Unmodified	_HPIEIARQL_					0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000115904|ENST00000402219|SOS1	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.8141903493001	2	538.81419	1075.61383	1.9513	0.0010514	-2.192	-0.0011811	-0.2407	-0.00012969	538.8126664125286	17.309	0.11981	17.309	17.261	17.381	0	1251	49	0.8670771	0.029463828	0.8670771	351.7473	0	11.952576						114	6	3	NaN	NaN	NaN	0.084037	1	11807	11807		38.131	17.682	1	8145.5			9283	1252	5390	5500	7318	7318					0.07904540462800469
HPIEIARQL	9	Unmodified						0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000115904|ENST00000402219|SOS1	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.81419	1075.61383	2.0668	0.0011136	-2.9431	-0.0015858	-0.87635	-0.00047219	539.314274227166	17.45	0.071981	17.436	17.388	17.46	-0.013569	1251	40	0.8670771	0.023940682	0.8655577	351.74734		9.711975	0.063477	-0.00058154	-0.00075972	NaN	38.131	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4304.5			9284	1252	5390	5500							0.07904540462800469
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.8111163441001	2	524.811116	1047.60768	1.7117	0.00089832	-2.0086	-0.0010542	-0.29693	-0.00015583	524.8101199811966	16.59	0.14398	16.59	16.566	16.71	0	1260	70	0.8615505	0.04236108	0.8615505	349.6235	0	17.19046						357	7	4	NaN	NaN	NaN	0.03533	1	10549	10549		53.14	25.28	1	78631			9285	1660	5391	5501	7319	7319					0.08578022231290561
HPIKQVDVL	9	Unmodified	_HPIKQVDVL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.8111163441001	2	524.811116	1047.60768	1.7078	0.00089627	-0.89653	-0.00047051	0.81127	0.00042576	524.8105019429884	16.754	0.19174	16.741	16.645	16.837	-0.013294	1260	67	0.8615505	0.04051715	0.8600311	349.62347	0	16.442139						388	9	3	NaN	NaN	NaN	0.028569	1	10333	10333		60.984	23.681	1	88567			9286	1660	5391	5501	7320	7320					0.08578022231290561
HPILGDWSI	9	Unmodified	_HPILGDWSI_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.27436669705	2	519.274367	1036.53418	1.4773	0.00076714	-3.9742	-0.0020637	-2.4969	-0.0012966	519.2714401412829	27.109	0.14482	27.109	27.06	27.205	0	1326	64	0.8209676	0.038769722	0.8209676	333.20084	0	15.735199						241	7	3	NaN	NaN	NaN	0.049695	1	10069	10069		47.04	13.342	1	42499			9287	84	5392	5502	7321	7321					0.017374737888076197
HPILGDWSI	9	Unmodified	_HPILGDWSI_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.27436669705	2	519.274367	1036.53418	1.0633	0.00055216	-1.8801	-0.00097628	-0.81676	-0.00042412	519.2734506779515	27.156	0.19305	27.146	27.074	27.267	-0.010126	1326	49	0.8209676	0.029546797	0.81944823	333.20084	0	11.991974						196	9	3	NaN	NaN	NaN	0.062836	1	9860	9860		41.46	0	1	32841			9288	84	5392	5502	7322	7322					0.017374737888076197
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.81145069510006	2	509.811451	1017.60835	1.996	0.0010176	-1.4483	-0.00073835	0.54766	0.0002792	509.8107473845489	17.117	0.14405	17.117	17.069	17.213	0	1269	64	0.8560222	0.038723588	0.8560222	347.51288	0	15.720306						202	7	3	NaN	NaN	NaN	0.062072	1	9293	9293		41.785	26.609	1	19817			9289	2246	5393	5503	7323	7323					0.10024861670990504
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.81145069510006	2	509.811451	1017.60835	1.4974	0.00076341	-1.0767	-0.00054891	0.42075	0.0002145	509.8107860046176	17.402	0.21601	17.388	17.292	17.508	-0.013569	1272	67	0.854179	0.040569723	0.8526596	346.7646	0	16.469788						200	10	2	NaN	NaN	NaN	0.36492	1	9110	9110		15.175	0	1	19981			9290	2246	5393	5503	7324	7324					0.10024861670990504
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7691141436501	2	512.769114	1023.52368	2.1813	0.0011185	-3.6426	-0.0018678	-1.4613	-0.0007493	512.7678904387128	20.069	0.2643	20.069	19.997	20.261	0	1308	88	0.83204526	0.053492785	0.83204526	337.7531	0	21.714386						419	12	3	NaN	NaN	NaN	0.024986	1	9501	9501		65.672	38.94	1	106500			9291	2908	5394	5504	7325	7325					0.01285446343717922
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5309518207	1	1024.53095	1023.52368	2.2662	0.0023218	-1.0592	-0.0010852	1.207	0.0012366	1024.5299569125798	20.069	0.096102	20.069	20.021	20.117	0	198	46	1.5015416	0.026610494	1.5015416	304.76523	0	5.401062						102	5	2	NaN	NaN	NaN	0.030391	1	9503	9503		58.599	31.868	1	8527.9			9292	2908	5394	5504	7326	7326					0.01285446343717922
HPISSEELL	9	Unmodified	_HPISSEELL_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7691141436501	2	512.769114	1023.52368	1.4451	0.00074102	-2.6533	-0.0013605	-1.2082	-0.00061952	512.7684548906822	20.092	0.24069	20.078	20.006	20.246	-0.014141	1308	70	0.83204526	0.042434454	0.8305259	337.75308	0	17.225464						382	11	3	NaN	NaN	NaN	0.032417	1	9315	9315		55.947	29.832	1	106280			9293	2908	5394	5504	7327	7327					0.01285446343717922
HPKHEAISERL	11	Unmodified	_HPKHEAISERL_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.8571177965	2	658.857118	1315.69968	1.5613	0.0010287	-9.3931	-0.0061887	-7.8318	-0.00516	658.8526010101228	29.183	0.072432	29.175	29.175	29.248	-0.0077209	1113	34	0.9515937	0.02016145	0.95007426	385.14117	0	8.160004						60	4	2	NaN	NaN	NaN	0.75907	1	18205	18205		3.5794	0.36781	1	4567.9	+		9294	13115;9440	5395	5505	7328	7328					0.05446080577644352
HPLAFLAAG	9	Unmodified	_HPLAFLAAG_					0	0	0			REV__SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	REV__SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.75307014895	2	448.75307	895.491587	1.2984	0.00058268	-3.7366	-0.0016768	-2.4381	-0.0010941	448.7512416600415	22.212	0.048218	22.212	22.212	22.26	0	1338	28	0.81357855	0.016629934	0.81357855	330.88263	0	6.7634277						46	3	2	NaN	NaN	NaN	0.65388	1	5995	5995		3.1533	0.36816	1	3946.7	+		9295	9688	5396	5506	7329	7329					0.039661234512209376
HPLDRDYQL	9	Unmodified	_HPLDRDYQL_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.79091221825	2	578.790912	1155.56727	1.9622	0.0011357	-1.8278	-0.0010579	0.13432	7.7744E-05	578.7896889553737	16.662	0.16792	16.662	16.566	16.734	0	1191	58	0.90387505	0.034933507	0.90387505	366.35416	0	14.159088						290	8	3	NaN	NaN	NaN	0.21451	1	15012	15012		24.4	7.2018	1	39507			9296	530	5397	5507	7330	7330					-0.004289441591481591
HPLDRDYQL	9	Unmodified	_HPLDRDYQL_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.79091221825	2	578.790912	1155.56727	1.7173	0.00099396	-2.1547	-0.0012471	-0.43743	-0.00025318	578.7907242437668	16.683	0.26361	16.669	16.621	16.885	-0.013294	1191	70	0.90387505	0.042297065	0.9023556	366.3542	0	17.143646						349	12	3	NaN	NaN	NaN	0.13999	1	14508	14508		30.035	6.9178	1	43212			9297	530	5397	5507	7331	7331					-0.004289441591481591
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENST00000571676.5_1_16:11858892-11864657:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7590807736001	2	516.759081	1031.50361	2.2842	0.0011804	1.962	0.0010139	4.2462	0.0021943	516.7601747412832	13.877	0.095989	13.877	13.853	13.949	0	1254	85	0.8652351	0.051622987	0.8652351	351.1898	0	20.953247						149	5	2	NaN	NaN	NaN	0.062072	1	9841	9841		41.785	16.823	1	12424			9298	2318	5398	5508	7332	7332					-0.010883045962373217
HPLEGTHEL	9	Unmodified						0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENST00000571676.5_1_16:11858892-11864657:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.759081	1031.50361	1.3823	0.0007143	-1.7603	-0.00090964	-0.37801	-0.00019534	516.7580025757292	13.973	0.09594	13.962	13.914	14.01	-0.010672	1254	67	0.8652351	0.04054779	0.86371565	351.18982		16.457947	0.042619	-0.00098487	-0.00075972	NaN	41.785	119	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9618.6			9299	2318	5398	5508							-0.010883045962373217
HPLGADSQV	9	Unmodified	_HPLGADSQV_					0	0	0		ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.23269884760003	2	462.232699	922.450845	1.3154	0.00060801	-1.0507	-0.00048568	0.26464	0.00012233	462.2323634004654	14.021	0.16807	14.021	13.973	14.141	0	1377	37	0.7895419	0.022203326	0.7895419	320.96515	0	9.026123						173	8	3	NaN	NaN	NaN	0.056143	1	6444	6444		44.302	19.341	1	19054			9300	2140	5399	5509	7333	7333					-0.013482626590416658
HPLGADSQV	9	Unmodified	_HPLGADSQV_					0	0	0		ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.23269884760003	2	462.232699	922.450845	0.82132	0.00037964	-0.93059	-0.00043015	-0.10926	-5.0505E-05	462.2318209116562	14.045	0.1199	14.034	13.938	14.058	-0.010672	1377	43	0.7895419	0.025898278	0.78802246	320.96515	0	10.528198						114	6	2	NaN	NaN	NaN	0.11467	1	6324	6324		33.698	4.1	1	13863			9301	2140	5399	5509	7334	7334					-0.013482626590416658
HPLGADSQV	9	Unmodified						0	0	0		ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	ENSG00000117394|ENST00000426263|SLC2A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	462.232699	922.450845	1.2507	0.00057812	-0.92318	-0.00042673	0.32754	0.0001514	462.2326471531725	14.117	0.095806	14.106	14.106	14.202	-0.010672	1374	31	0.791392	0.018502772	0.7898726	321.7173		7.521759	0.042577	7.5708E-05	0.00016537	NaN	44.302	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4340.6			9302	2140	5399	5509							-0.013482626590416658
HPLGDIVAF	9	Unmodified	_HPLGDIVAF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.76363483525006	2	484.763635	967.512717	2.1202	0.0010278	-2.0041	-0.0009715	0.11611	5.6284E-05	484.7628025402977	25.539	0.16884	25.539	25.467	25.636	0	1353	43	0.8043377	0.02588147	0.8043377	326.75638	0	10.51416						128	8	2	NaN	NaN	NaN	0.062836	1	7542	7542		41.46	14.729	1	16347			9303	4687	5400	5510	7335	7335					0.027660887600973183
HPLGDIVAF	9	Unmodified	_HPLGDIVAF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.76363483525006	2	484.763635	967.512717	2.1902	0.0010617	-2.5298	-0.0012263	-0.33953	-0.00016459	484.7621766123179	25.563	0.19301	25.552	25.479	25.672	-0.011602	1353	37	0.8043377	0.022186518	0.80281824	326.75638	0	9.013123						163	9	3	NaN	NaN	NaN	0.11467	1	7397	7397		33.698	6.9667	1	16930			9304	4687	5400	5510	7336	7336					0.027660887600973183
HPLGEFEDQQL	11	Unmodified	_HPLGEFEDQQL_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.8120415908501	2	656.812042	1311.60953	1.2669	0.00083214	1.0115	0.00066437	2.2785	0.0014965	657.3171158905826	21.44	0.19279	21.44	21.392	21.585	0	1149	76	0.92958635	0.04585117	0.92958635	376.24622	0	18.558044						243	9	4	NaN	NaN	NaN	0.22707	1	18977	18977		31.675	9.825	1	23363			9305	404;13663	5401	5511	7337	7337					-0.03381013541434186
HPLGSFEQM	9	Unmodified	_HPLGSFEQM_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2422092889001	2	523.242209	1044.46987	1.4426	0.00075484	7.5756	0.0039639	9.0183	0.0047187	523.2471591749876	19.779	0.12026	19.765	19.669	19.789	-0.014141	1293	49	0.84127116	0.029508412	0.8397517	341.40723	0	11.97522						107	6	2	NaN	NaN	NaN	0.12945	1	10179	10179		31.561	6.999	1	17691			9306	4038	5402	5512	7338	7338					-0.05059049359647361
HPLGSFEQM	9	Unmodified						0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.242209	1044.46987	1.6346	0.00085529	3.3286	0.0017417	4.9632	0.002597	523.2432998448018	19.756	0.09605	19.756	19.684	19.78	0	1290	88	0.84311575	0.05351591	0.84311575	342.15582		21.717987	-0.0044904	-0.0023222	0.001682	NaN	31.561	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16444			9307	4038	5402	5512							-0.05059049359647361
HPLHDFIL	8	Unmodified	_HPLHDFIL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.27162704285007	2	496.271627	990.528701	1.9446	0.00096504	-2.8478	-0.0014133	-0.90323	-0.00044825	496.27018194457116	21.826	0.24091	21.826	21.73	21.97	0	1278	64	0.85049206	0.038723588	0.85049206	345.39377	0	15.726044						301	11	2	NaN	NaN	NaN	0.30832	1	8236	8236		41.46	19.334	1	72943			9308	1024	5403	5513	7339	7339					0.03305794997004341
HPLHDFIL	8	Unmodified	_HPLHDFIL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.27162704285007	2	496.271627	990.528701	1.0018	0.00049716	-1.4363	-0.0007128	-0.4345	-0.00021563	496.2713339166276	21.994	0.36146	21.98	21.86	22.221	-0.013897	1275	64	0.85233563	0.038723588	0.8508162	346.14246	0	15.726044						450	16	3	NaN	NaN	NaN	0.62311	1	8065	8065		23.85	0	1	78123			9309	1024	5403	5513	7340	7340					0.03305794997004341
HPLHNDPNL	9	Unmodified	_HPLHNDPNL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.76469746775	2	528.764697	1055.51484	1.3359	0.0007064	-2.3185	-0.0012259	-0.98251	-0.00051952	528.7634111891892	12.94	0.2402	12.94	12.868	13.108	0	1290	67	0.84311575	0.040587306	0.84311575	342.10925	0	16.469025						408	11	3	NaN	NaN	NaN	0.006197	1	10881	10881		100.15	32.525	1	100430			9310	523	5404	5514	7341	7341					-0.010694825021118959
HPLHNDPNL	9	Unmodified	_HPLHNDPNL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.76469746775	2	528.764697	1055.51484	0.96399	0.00050972	-0.63354	-0.00033499	0.33045	0.00017473	528.7645734474634	13.014	0.21566	13.004	12.909	13.124	-0.00947	1287	58	0.8449601	0.03504312	0.84344065	342.85764	0	14.219391						364	10	3	NaN	NaN	NaN	0.013959	1	10651	10651		80.901	32.899	1	97366			9311	523	5404	5514	7342	7342					-0.010694825021118959
HPLPFPSL	8	Unmodified	_HPLPFPSL_					0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.25544566240006	2	454.255446	906.496338	0.98001	0.00044518	-2.606	-0.0011838	-1.626	-0.00073862	454.2542650362432	23.947	0.1206	23.947	23.899	24.019	0	1386	31	0.78399014	0.018508792	0.78399014	318.79056	0	7.5261536						108	6	3	NaN	NaN	NaN	0.46176	1	6185	6185		33.137	0	1	10742			9312	6794	5405	5515	7343	7343					0.039350075939978524
HPLPFPSL	8	Unmodified	_HPLPFPSL_					0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.25544566240006	2	454.255446	906.496338	1.3921	0.00063239	0.096597	4.388E-05	1.4887	0.00067627	454.25556625999695	23.971	0.096519	23.958	23.934	24.03	-0.01305	1386	34	0.78399014	0.020356357	0.7824707	318.79053	0	8.277435						91	5	3	NaN	NaN	NaN	0.41293	1	6064	6064		35.745	0	1	8950.1			9313	6794	5405	5515	7344	7344					0.039350075939978524
HPLRWLVR	8	Unmodified	_HPLRWLVR_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;OBSCN-KRT17|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.5540488957334	3	359.554049	1075.64032	2.2848	0.0008215	-0.97466	-0.00035044	1.3101	0.00047105	359.55361090632397	21.272	0.024073	21.258	21.258	21.282	-0.014004	1428	34	0.7580582	0.020391703	0.75653875	461.2768	0	12.408295						38	2	2	NaN	NaN	NaN	0.79379	1	11495	11495		10.605	4.6852	1	3405.1			9314	3841	5406	5516	7345	7345					0.10552274144811236
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2750949785501	2	560.275095	1118.53564	2.9151	0.0016333	-1.4877	-0.00083351	1.4274	0.00079975	560.2739881151849	13.829	0.48029	13.829	13.757	14.237	0	1254	112	0.8652351	0.06813884	0.8652351	350.8297	0	27.628448						1479	21	6	NaN	NaN	NaN	8.3958E-13	1	13612	13612		144.65	0	1	1743400			9315	5890	5407	5517	7346	7346					-0.01888936913087491
HPLSDHEATL	10	Unmodified	_HPLSDHEATL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2750949785501	2	560.275095	1118.53564	2.3822	0.0013347	-1.5277	-0.00085594	0.85451	0.00047876	560.2742644589924	13.877	0.38356	13.866	13.794	14.178	-0.010672	1254	130	0.8652351	0.07920545	0.86371565	350.8297	0	32.115723						1510	17	6	NaN	NaN	NaN	5.509900000000001E-19	1	13209	13209		158.26	0	1	1734000			9316	5890	5407	5517	7347	7347					-0.01888936913087491
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.8002173068	2	527.800217	1053.58588	1.6933	0.00089375	-0.86461	-0.00045634	0.82873	0.00043741	527.799749083521	26.553	0.19307	26.553	26.505	26.698	0	1257	88	0.86339295	0.053417623	0.86339295	350.34534	0	21.67566						351	9	3	NaN	NaN	NaN	0.056273	1	10813	10813		44.247	15.58	1	44082			9317	5082	5408	5518	7348	7348					0.06123217482695509
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.593158147	1	1054.59316	1053.58588	2.189	0.0023085	-1.2105	-0.0012766	0.97847	0.0010319	1054.5917772758112	26.553	0.16895	26.553	26.505	26.674	0	120	55	1.5476005	0.03185308	1.5476005	313.99454	0	6.4627075						118	8	2	NaN	NaN	NaN	0.062836	1	10814	10814		41.46	20.905	1	7476.2			9318	5082	5408	5518	7349	7349					0.06123217482695509
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.593158147	1	1054.59316	1053.58588	1.7446	0.0018398	-2.7046	-0.0028523	-0.96004	-0.0010125	1054.590646016919	26.577	0.12065	26.566	26.542	26.663	-0.010645	123	46	1.5458313	0.02653718	1.5443119	313.6356	0	5.3841553						87	6	2	NaN	NaN	NaN	0.45297	1	10587	10587		11.548	0.37812	1	5789			9319	5082	5408	5518	7350	7350					0.06123217482695509
HPLYVDVVL	9	Unmodified	_HPLYVDVVL_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.8002173068	2	527.800217	1053.58588	0.93852	0.00049535	0.57223	0.00030202	1.5108	0.00079738	527.8006180168379	26.577	0.24132	26.566	26.518	26.759	-0.010645	1254	100	0.8652351	0.060798764	0.86371565	351.09286	0	24.670746						354	11	3	NaN	NaN	NaN	0.056273	1	10588	10588		44.247	10.549	1	44331			9320	5082	5408	5518	7351	7351					0.06123217482695509
HPLYVDVVL	9	Unmodified						0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.800217	1053.58588	1.5933	0.00084096	-7.0288	-0.0037098	-5.4355	-0.0028689	528.298993458905	26.818	0.024107	26.808	26.808	26.832	-0.010645	1257	52	0.86339295	0.03131038	0.8618735	350.34537		12.705048	0.12726	-0.0057579	-0.00075972	NaN	44.247	45	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3228.3			9321	5082	5408	5518							0.06123217482695509
HPMAYQLQL	9	Unmodified	_HPMAYQLQL_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|522|13.99|0.0|20.42|+|ENST00000677536|CSNK2B,CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7815016249001	2	550.781502	1099.54845	1.4658	0.00080732	-0.37039	-0.000204	1.0954	0.00060331	550.7818359862738	22.958	0.096502	22.945	22.872	22.969	-0.01354	1239	61	0.87444305	0.036825776	0.8729236	354.63782	0	14.935028						157	5	3	NaN	NaN	NaN	0.14945	1	12496	12496		28.667	4.1045	1	40597			9322	150	5409	5519	7352	7352					0.0026580294545510696
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.22814478595	2	548.228145	1094.44174	1.4039	0.00076968	-1.0161	-0.00055704	0.38786	0.00021264	548.2274267140953	14.717	0.31219	14.717	14.621	14.933	0	1251	85	0.8670771	0.051550567	0.8670771	351.6708	0	20.907959						672	14	3	NaN	NaN	NaN	0.032689	1	12583	12583		55.592	33.757	1	134920			9323	1944	5410	5520	7353	7353					-0.10170656015384338
HPNDDDVHF	9	Unmodified	_HPNDDDVHF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.22814478595	2	548.228145	1094.44174	1.4049	0.0007702	-1.2728	-0.00069777	0.13211	7.2429E-05	548.2274501766688	14.716	0.40805	14.704	14.608	15.016	-0.011738	1251	82	0.8670771	0.049706757	0.8655577	351.6708	0	20.160156						889	18	3	NaN	NaN	NaN	0.013959	1	12254	12254		80.901	48.448	1	165020			9324	1944	5410	5520	7354	7354					-0.10170656015384338
HPNDDDVHF	9	Unmodified						0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.228145	1094.44174	2.0243	0.0011098	-1.8717	-0.0010261	0.15257	8.3643E-05	548.22744102796	14.38	0.023947	14.369	14.369	14.393	-0.011219	1293	43	0.84127116	0.025828242	0.8397517	341.20438		10.475464	-0.17406	-0.00090008	-0.013663	NaN	55.592	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3091.2			9325	1944	5410	5520							-0.10170656015384338
HPNIVSLQDVL	11	Unmodified	_HPNIVSLQDVL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.843144754	2	617.843145	1233.67174	1.0671	0.00065933	-1.7428	-0.0010768	-0.67564	-0.00041744	617.8422744365002	26.988	0.16893	26.988	26.964	27.133	0	1146	97	0.93142134	0.058743358	0.93142134	377.2371	0	23.791779						311	8	2	NaN	NaN	NaN	0.03503	1	17369	17369		53.652	24.756	1	91253			9326	4721	5411	5521	7355	7355					0.06424757597551434
HPNIVSLQDVL	11	Unmodified	_HPNIVSLQDVL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.843144754	2	617.843145	1233.67174	0.75996	0.00046954	-1.0012	-0.00061856	-0.24119	-0.00014902	617.8426100133262	27.035	0.16896	27.025	27.001	27.17	-0.010124	1143	88	0.9332562	0.05325049	0.93173677	377.98022	0	21.567108						390	8	3	NaN	NaN	NaN	0.073891	1	16643	16643		43.776	20.658	1	85154			9327	4721	5411	5521	7356	7356					0.06424757597551434
HPNYLGDLIM	10	Unmodified	_HPNYLGDLIM_					0	0	0		nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;ENSG00000143815|ENST00000272163|LBR	nc|ENSG00000149809|O76062-2|TM7SF2	nc|ENSG00000149809|O76062-2|TM7SF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.7920663112001	2	586.792066	1171.56958	1.1489	0.00067416	1.2286	0.00072094	2.3775	0.0013951	586.7928015424084	27.156	0.31374	27.146	27.001	27.315	-0.010126	1206	79	0.894683	0.04778564	0.89316356	362.57007	0	19.365143						511	14	4	NaN	NaN	NaN	0.026555	1	14996	14996		60.982	28.529	1	77310			9328	3697	5412	5522	7357	7357					-0.009342317456912497
HPPLDPWGPL	10	Unmodified	_HPPLDPWGPL_					0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.7954662799001	2	564.795466	1127.57638	2.1733	0.0012275	-5.289	-0.0029872	-3.1157	-0.0017597	564.7925004994042	16.398	0.26377	16.398	16.35	16.614	0	1224	82	0.883646	0.04971218	0.883646	358.2599	0	20.154968						471	12	4	NaN	NaN	NaN	0.26902	1	13999	13999		29.598	0.70274	1	79636	+		9329	11979	5413	5523	7358	7358					0.01769449197195172
HPPLDPWGPL	10	Unmodified						0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.795466	1127.57638	2.1733	0.0012275	-5.289	-0.0029872	-3.1157	-0.0017597	564.7925004994042	16.398	0.26377	16.398	16.35	16.614	0	1224	82	0.883646	0.04971218	0.883646	358.2599		20.154968	-0.19555	0.00031395	0.00075972	NaN	29.598	471	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79636	+		9330	11979	5413	5523							0.01769449197195172
HPPLDPWGPL	10	Unmodified						0	0	0			REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	REV__ENST00000392225.7_1_19:35616099-35617731:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.795466	1127.57638	3.1081	0.0017555	-10.323	-0.0058307	-7.2153	-0.0040752	564.7910849070381	16.802	0.023991	16.789	16.789	16.813	-0.013294	1224	31	0.883646	0.018400967	0.88212657	358.25992		7.460388	0.19555	-0.0053729	-0.00075972	NaN	29.598	27	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1660.5	+		9331	11979	5413	5523							0.01769449197195172
HPPLSLMEV	9	Unmodified	_HPPLSLMEV_					0	0	0		ENST00000530682.5_1_8:146054445-146055231:+|nuORF	ENST00000530682.5_1_8:146054445-146055231:+|nuORF	ENST00000530682.5_1_8:146054445-146055231:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.7706025876	2	511.770603	1021.52665	1.0283	0.00052627	2.7774	0.0014214	3.8057	0.0019477	511.7724676683417	32.634	0.072414	32.631	32.583	32.655	-0.0031052	1353	28	0.8043377	0.016638994	0.80281824	326.51416	0	6.7544556						48	4	2	NaN	NaN	NaN	0.53206	1	9240	9240		8.2903	2.8244	1	6079.7			9332	7450	5414	5524	7359	7359					0.01674998196881461
HPPPLPLSLM	10	Unmodified	_HPPPLPLSLM_					0	0	0			REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3	REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.87568877126665	3	367.875689	1100.60524	1.4944	0.00054974	3.6834	0.001355	5.1778	0.0019048	367.8769951895072	14.573	0.11998	14.573	14.525	14.645	0	1440	22	0.7506418	0.012980759	0.7506418	456.63315	0	7.8964844						51	6	2	NaN	NaN	NaN	0.75316	1	12877	12877		1.8901	0	1	2938.1	+		9333	8226	5415	5525	7360	7360					0.05895850501951827
HPPPPPPGLH	10	Unmodified	_HPPPPPPGLH_					0	0	0			REV__ENSG00000198914|ENST00000361360|POU3F3	REV__ENSG00000198914|ENST00000361360|POU3F3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2825260801501	2	523.282526	1044.5505	1.5839	0.00082884	1.9426	0.0010165	3.5266	0.0018454	523.7840936783115	25.033	0.19304	25.033	24.96	25.153	0	1287	94	0.8449601	0.057126284	0.8449601	342.904	0	23.183136						484	9	3	NaN	NaN	NaN	0.7459	1	10412	10412		4.9097	0.94122	1	58778	+		9334	11205	5416	5526	7361	7361					0.03000599745564614
HPPPPPPGLH	10	Unmodified						0	0	0			REV__ENSG00000198914|ENST00000361360|POU3F3	REV__ENSG00000198914|ENST00000361360|POU3F3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.282526	1044.5505	1.5839	0.00082884	1.9426	0.0010165	3.5266	0.0018454	523.7840936783115	25.033	0.19304	25.033	24.96	25.153	0	1287	94	0.8449601	0.057126284	0.8449601	342.904		23.183136	-0.018021	-0.0026365	0.0016819	NaN	4.9097	484	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58778	+		9335	11205	5416	5526							0.03000599745564614
HPQEENEPSL	10	Unmodified	_HPQEENEPSL_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2674669117	2	590.267467	1178.52038	1.3852	0.00081766	-1.8356	-0.0010835	-0.45039	-0.00026585	590.267390451364	14.957	0.1922	14.957	14.861	15.053	0	1266	67	0.85786515	0.040521502	0.85786515	347.6258	0	16.420197						219	9	2	NaN	NaN	NaN	0.5626	1	15775	15775		16.858	2.4333	1	19541			9336	3081	5417	5527	7362	7362					-0.06173848500952772
HPQFVTDVM	9	Unmodified	_HPQFVTDVM_					0	0	0		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2578593531001	2	537.257859	1072.50117	1.8416	0.0009894	3.3992	0.0018263	5.2408	0.0028157	537.2597910925297	21.681	0.07229	21.681	21.657	21.73	0	1284	64	0.8468043	0.038715184	0.8468043	343.53583	0	15.706177						76	4	2	NaN	NaN	NaN	0.13602	1	11656	11656		30.61	6.0481	1	14416			9337	4300	5418	5528	7363	7363					-0.03218476325537267
HPQFVTDVM	9	Unmodified						0	0	0		ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENST00000515678.5_1_4:146042303-146044753:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.257859	1072.50117	1.1918	0.00064031	7.7938	0.0041873	8.9856	0.0048276	537.2623058886253	21.705	0.12041	21.691	21.619	21.74	-0.013897	1284	82	0.8468043	0.049765885	0.8452849	343.53583		20.1893	0.0050518	0.0028345	-0.00075972	NaN	30.61	144	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28439			9338	4300	5418	5528							-0.03218476325537267
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.25871663284994	2	499.258717	996.50288	1.8819	0.00093957	-2.8768	-0.0014363	-0.99485	-0.00049669	499.25708024502336	22.549	0.14471	22.549	22.501	22.645	0	1317	67	0.8265074	0.040622413	0.8265074	335.62576	0	16.49585						263	7	3	NaN	NaN	NaN	0.27608	1	8439	8439		20.449	2.479	1	66939			9339	5091	5419	5529	7364	7364					0.004489007547022084
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5101567991	1	997.510157	996.50288	2.1461	0.0021408	0.43557	0.00043449	2.5817	0.0025752	997.5097256927245	22.549	0.072332	22.549	22.525	22.597	0	222	46	1.4873441	0.026630163	1.4873441	301.9924	0	5.407013						59	4	2	NaN	NaN	NaN	0.2345	1	8441	8441		23.118	3.8329	1	3721.9			9340	5091	5419	5529	7365	7365					0.004489007547022084
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.25871663284994	2	499.258717	996.50288	1.1454	0.00057183	-2.5985	-0.0012973	-1.4532	-0.0007255	499.2576218182215	22.573	0.16884	22.559	22.511	22.68	-0.01354	1317	64	0.8265074	0.03876543	0.82498795	335.62576	0	15.74176						310	8	4	NaN	NaN	NaN	0.12328	1	8270	8270		32.453	9.1183	1	68900			9341	5091	5419	5529	7366	7366					0.004489007547022084
HPQGFEVAL	9	Unmodified	_HPQGFEVAL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5101567991	1	997.510157	996.50288	2.4286	0.0024225	0.7097	0.00070793	3.1383	0.0031305	997.5119227563962	22.573	0.048241	22.559	22.535	22.583	-0.01354	225	37	1.4855686	0.021305203	1.4840492	301.6319	0	4.3258667						43	3	2	NaN	NaN	NaN	0.2345	1	8272	8272		23.118	5.1479	1	2702.8			9342	5091	5419	5529	7367	7367					0.004489007547022084
HPQIEPANQEL	11	Unmodified	_HPQIEPANQEL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.32003379845	2	638.320034	1274.62551	2.3273	0.0014856	-1.796	-0.0011464	0.53132	0.00033916	638.3188539342262	17.453	0.1918	17.453	17.405	17.597	0	1167	85	0.91857195	0.05141151	0.91857195	371.90063	0	20.81488						534	9	4	NaN	NaN	NaN	1.3566E-11	1	18311	18311		112.27	56.315	1	159810			9343	547	5420	5530	7368	7368					-0.0008130730452649004
HPQIEPANQEL	11	Unmodified	_HPQIEPANQEL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.32003379845	2	638.320034	1274.62551	2.3715	0.0015138	-1.6091	-0.0010271	0.76236	0.00048663	638.3190670517544	17.474	0.19204	17.46	17.412	17.604	-0.013567	1167	85	0.91857195	0.05141151	0.9170525	371.90063	0	20.81488						539	9	4	NaN	NaN	NaN	0.0002439	1	17504	17504		80.442	33.854	1	174440			9344	547	5420	5530	7369	7369					-0.0008130730452649004
HPQTHETAL	9	Unmodified	_HPQTHETAL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.25670526015	2	517.256705	1032.49886	2.5097	0.0012981	-2.8017	-0.0014492	-0.29206	-0.00015107	517.2554295529476	11.548	0.36018	11.548	11.404	11.764	0	1293	100	0.84127116	0.06084478	0.84127116	341.45877	0	24.695923						707	16	4	NaN	NaN	NaN	0.013959	1	9879	9879		80.901	41.442	1	156500			9345	1650	5421	5531	7370	7370					-0.0160918873900755
HPQTHETAL	9	Unmodified	_HPQTHETAL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.25670526015	2	517.256705	1032.49886	1.5522	0.00080289	-1.8214	-0.00094215	-0.26922	-0.00013926	517.2557800410297	11.598	0.57612	11.59	11.422	11.998	-0.0075302	1293	100	0.84127116	0.06084478	0.8397517	341.45877	0	24.695923						806	25	2	NaN	NaN	NaN	0.024359	1	9671	9671		66.481	27.022	1	200420			9346	1650	5421	5531	7371	7371					-0.0160918873900755
HPQYEVVEISF	11	Unmodified	_HPQYEVVEISF_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3;nc|ENSG00000064419|Q9Y5L0-5|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.33260985745	2	674.33261	1346.65067	1.5567	0.0010497	-3.4762	-0.0023441	-1.9195	-0.0012944	674.3303384081715	26.432	0.096546	26.432	26.408	26.505	0	1110	64	0.95342636	0.038490057	0.95342636	385.79068	0	15.574463						141	5	3	NaN	NaN	NaN	0.45017	1	19502	19502		27.046	10.188	1	17675			9347	668	5422	5532	7372	7372					-0.008792525019543973
HPQYEVVEISF	11	Unmodified	_HPQYEVVEISF_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3;nc|ENSG00000064419|Q9Y5L0-5|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.33260985745	2	674.33261	1346.65067	1.0152	0.00068461	-0.91659	-0.00061808	0.098652	6.6524E-05	674.3324649958582	26.456	0.096512	26.445	26.421	26.517	-0.011137	1113	58	0.9515937	0.034820557	0.95007426	385.04913	0	14.089661						124	5	2	NaN	NaN	NaN	0.35694	1	18634	18634		37.231	15.38	1	17873			9348	668	5422	5532	7373	7373					-0.008792525019543973
HPRSAEPVYV	10	Unmodified	_HPRSAEPVYV_					0	0	0			REV__nc|ENSG00000133961|P49757-8|NUMB	REV__nc|ENSG00000133961|P49757-8|NUMB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8012799393	2	577.80128	1153.58801	1.6869	0.0009747	-1.5784	-0.00091202	0.10848	6.2682E-05	577.800356210268	17.546	0.23986	17.532	17.436	17.676	-0.013567	1251	58	0.8670771	0.034993947	0.8655577	351.44653	0	14.183868						234	11	2	NaN	NaN	NaN	0.58645	1	14439	14439		15.822	2.8191	1	36908	+		9349	9576	5423	5533	7374	7374					0.0173564622050435
HPSAHDVIL	9	Unmodified	_HPSAHDVIL_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.7641661515	2	494.764166	987.513779	1.9045	0.00094226	-1.8909	-0.00093556	0.013528	6.693E-06	494.76292069369225	15.966	0.23988	15.966	15.822	16.062	0	1287	79	0.8449601	0.047982335	0.8449601	343.16153	0	19.486938						459	11	3	NaN	NaN	NaN	0.03623	1	8127	8127		52.758	28.908	1	77942			9350	621	5424	5534	7375	7375					0.019523031289850223
HPSAHDVIL	9	Unmodified	_HPSAHDVIL_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.7641661515	2	494.764166	987.513779	1.8104	0.00089571	-2.4733	-0.0012237	-0.66292	-0.00032799	494.7626828674949	16.107	0.31152	16.094	15.903	16.214	-0.012611	1287	91	0.8449601	0.05537623	0.84344065	343.16153	0	22.489807						603	14	4	NaN	NaN	NaN	0.20577	1	7964	7964		24.961	7.1807	1	105080			9351	621	5424	5534	7376	7376					0.019523031289850223
HPSASYNQL	9	Unmodified	_HPSASYNQL_					0	0	0		JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7434307094	2	508.743431	1015.47231	1.1129	0.00056618	-2.4733	-0.0012583	-1.3604	-0.0006921	508.74167338063063	14.884	0.096087	14.872	14.8	14.896	-0.011737	1323	34	0.8228144	0.020314455	0.82129496	334.04114	0	8.247162						79	5	2	NaN	NaN	NaN	0.41766	1	9007	9007		13.003	2.3979	1	7202.6			9352	4819	5425	5535	7377	7377					-0.0348087763032936
HPSASYNQL	9	Unmodified						0	0	0		JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.743431	1015.47231	1.5648	0.0007961	-3.8384	-0.0019527	-2.2735	-0.0011566	508.74131698621665	14.861	0.072078	14.861	14.813	14.885	0	1326	37	0.8209676	0.022160053	0.8209676	333.2914		8.996399	-0.0053872	-0.0008158	-0.00016367	NaN	13.003	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7801.2			9353	4819	5425	5535							-0.0348087763032936
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7509213905	2	512.750921	1023.48729	2.0989	0.0010762	-2.3902	-0.0012256	-0.2913	-0.00014937	512.7495784022424	21.175	0.24089	21.175	21.103	21.344	0	1359	91	0.8006399	0.055430233	0.8006399	325.00482	0	22.500854						709	11	4	NaN	NaN	NaN	0.03623	1	9493	9493		52.758	16.172	1	293180			9354	57	5426	5536	7378	7378					-0.023514305530056845
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4945663144	1	1024.49457	1023.48729	2.0323	0.0020821	0.037749	3.8673E-05	2.07	0.0021208	1024.4946548277433	21.175	0.24089	21.175	21.103	21.344	0	219	64	1.4891195	0.037282348	1.4891195	302.24408	0	7.5671387						290	11	3	NaN	NaN	NaN	0.014046	1	9494	9494		80.639	33.157	1	35585			9355	57	5426	5536	7379	7379					-0.023514305530056845
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7509213905	2	512.750921	1023.48729	1.4338	0.0007352	-1.3866	-0.00071097	0.047258	2.4232E-05	512.7503683467019	21.176	0.21663	21.162	21.114	21.33	-0.014004	1359	94	0.8006399	0.05727482	0.7991205	325.00482	0	23.249664						699	10	4	NaN	NaN	NaN	0.01047	1	9303	9303		91.429	41.596	1	288350			9356	57	5426	5536	7380	7380					-0.023514305530056845
HPSDIEVDL	9	Unmodified	_HPSDIEVDL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.4945663144	1	1024.49457	1023.48729	1.3723	0.0014059	0.15031	0.00015399	1.5226	0.0015599	1024.4947007801247	21.176	0.14446	21.162	21.114	21.258	-0.014004	216	64	1.4908947	0.037278295	1.4893752	302.60437	0	7.566345						275	7	4	NaN	NaN	NaN	0.0047854	1	9304	9304		103.03	69.889	1	33372			9357	57	5426	5536	7381	7381					-0.023514305530056845
HPSDIEVDLL	10	Unmodified	_HPSDIEVDLL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2929533807	2	569.292953	1136.57135	2.4335	0.0013854	-2.3863	-0.0013585	0.047156	2.6845E-05	569.2917754883225	25.371	0.31361	25.371	25.322	25.636	0	1227	142	0.88180584	0.08653599	0.88180584	357.4796	0	35.08127						952	14	3	NaN	NaN	NaN	0.1802	1	14341	14341		55.494	19.259	1	325220			9358	57	5427	5537	7382	7382					0.008531005438953798
HPSDIEVDLL	10	Unmodified	_HPSDIEVDLL_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;RAB11B-B2M|1|fusion	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2929533807	2	569.292953	1136.57135	2.0653	0.0011758	-0.85696	-0.00048786	1.2083	0.00068789	569.2926249295567	25.37	0.24132	25.358	25.334	25.575	-0.012011	1224	139	0.883646	0.08469939	0.88212657	358.22562	0	34.3367						937	11	4	NaN	NaN	NaN	0.1802	1	13872	13872		55.494	23.818	1	293290			9359	57	5427	5537	7383	7383					0.008531005438953798
HPSERSFEL	9	Unmodified	_HPSERSFEL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2698126354001	2	551.269813	1100.52507	1.6486	0.00090882	-2.3802	-0.0013121	-0.73161	-0.00040331	551.2696707162195	16.23	0.14409	16.23	16.182	16.326	0	1242	82	0.87260187	0.049744427	0.87260187	353.88724	0	20.174042						583	7	5	NaN	NaN	NaN	0.059222	1	12863	12863		42.995	0.67717	1	99986			9360	3902	5428	5538	7384	7384					-0.021169195675156516
HPSFPEVSF	9	Unmodified	_HPSFPEVSF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.75072442525	2	523.750724	1045.4869	1.2432	0.00065115	-2.4273	-0.0012713	-1.184	-0.00062013	523.7492613715098	24.647	0.193	24.647	24.598	24.791	0	1353	58	0.8043377	0.035111487	0.8043377	326.41467	0	14.248901						208	9	3	NaN	NaN	NaN	0.04947	1	10434	10434		47.136	22.175	1	34949			9361	4766	5429	5539	7385	7385					-0.03402805482187432
HPSFPEVSF	9	Unmodified	_HPSFPEVSF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.75072442525	2	523.750724	1045.4869	1.1602	0.00060764	-1.1695	-0.00061255	-0.0093742	-4.9097E-06	523.7500514734805	24.647	0.1688	24.634	24.586	24.755	-0.012394	1353	37	0.8043377	0.022184074	0.80281824	326.41467	0	9.002716						216	8	4	NaN	NaN	NaN	0.021105	1	10224	10224		70.6	50.044	1	33397			9362	4766	5429	5539	7386	7386					-0.03402805482187432
HPSGAVHHRV	10	Unmodified	_HPSGAVHHRV_					0	0	0		ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7915809202501	2	548.791581	1095.56861	1.1087	0.00060846	-10.252	-0.0056261	-9.1431	-0.0050176	548.7858177080195	20.501	0.12018	20.501	20.405	20.525	0	1227	67	0.88180584	0.04050839	0.88180584	357.63995	0	16.42923						136	6	2	NaN	NaN	NaN	0.76892	1	12654	12654		3.2116	0.32214	1	13138			9363	7114	5430	5540	7387	7387					0.02464734720274464
HPSKVVITRL	10	Unmodified	_HPSKVVITRL_					0	0	0		ENST00000431047.1_1_7:156426300-156426462:+|nuORF;ENST00000584906.5_1_17:8280884-8283916:-|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000431047.1_1_7:156426300-156426462:+|nuORF	ENST00000431047.1_1_7:156426300-156426462:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.90826884116666	3	383.908269	1148.70298	1.1638	0.00044679	-0.15949	-6.1229E-05	1.0043	0.00038556	383.9080235404091	14.573	0.095922	14.573	14.501	14.597	0	1431	34	0.75620437	0.020393908	0.75620437	459.77917	0	12.399689						107	5	3	NaN	NaN	NaN	0.55649	1	14771	14771		17.112	5.5506	1	9494			9364	513	5431	5541	7388	7388					0.1345737542230836
HPSLVAWH	8	Unmodified	_HPSLVAWH_					0	0	0			REV__ENSG00000108878|ENST00000226021|CACNG1	REV__ENSG00000108878|ENST00000226021|CACNG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.74831912204996	2	473.748319	945.482085	0.38372	0.00018179	7.4135	0.0035121	7.7972	0.0036939	473.75159618207726	26.842	0.072426	26.832	26.808	26.88	-0.010645	1350	88	0.80618626	0.053562284	0.8046668	327.61423	0	21.766388						117	4	2	NaN	NaN	NaN	0.80071	1	6829	6829		9.1232	0.83292	1	11889	+		9365	9045	5432	5542	7389	7389					0.007163551656958589
HPSLVAWH	8	Unmodified						0	0	0			REV__ENSG00000108878|ENST00000226021|CACNG1	REV__ENSG00000108878|ENST00000226021|CACNG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.748319	945.482085	1.0754	0.00050947	5.4695	0.0025912	6.5449	0.0031007	473.7504991248343	26.843	0.072422	26.843	26.819	26.891	0	1353	91	0.8043377	0.055406213	0.8043377	326.863		22.515747	0.0057435	-0.0013159	-0.00016457	NaN	9.1232	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8733.3	+		9366	9045	5432	5542							0.007163551656958589
HPSLVAWH	8	Unmodified						0	0	0			REV__ENSG00000108878|ENST00000226021|CACNG1	REV__ENSG00000108878|ENST00000226021|CACNG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.748319	945.482085	0.38372	0.00018179	7.4135	0.0035121	7.7972	0.0036939	473.75159618207726	26.842	0.072426	26.832	26.808	26.88	-0.010645	1350	88	0.80618626	0.053562284	0.8046668	327.61423		21.766388	-0.0057435	0.00052599	0.00016457	NaN	9.1232	117	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11889	+		9367	9045	5432	5542							0.007163551656958589
HPSQDLVF	8	Unmodified	_HPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4679576334	1	942.467958	941.460681	1.3158	0.0012401	0.79587	0.00075009	2.1117	0.0019902	942.4683678739293	20.405	0.14421	20.405	20.381	20.525	0	363	43	1.4036897	0.024980664	1.4036897	285.2343	0	5.0761414						139	7	3	NaN	NaN	NaN	0.54116	1	6843	6843		28.896	0	1	9052			9368	1753	5433	5543	7390	7390					-0.012390746536766528
HPSQDLVF	8	Unmodified	_HPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.73761705	2	471.737617	941.460681	0.16985	8.0122E-05	1.152	0.00054343	1.3218	0.00062355	471.73823750344326	20.453	0.21663	20.439	20.391	20.608	-0.014143	1365	43	0.7969414	0.025889874	0.79542196	323.8772	0	10.521637						208	10	3	NaN	NaN	NaN	0.63138	1	6707	6707		23.334	0	1	31640			9369	1753	5433	5543	7391	7391					-0.012390746536766528
HPSQDLVF	8	Unmodified	_HPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4679576334	1	942.467958	941.460681	1.7208	0.0016218	0.01491	1.4052E-05	1.7357	0.0016359	942.4680713147391	20.453	0.14439	20.439	20.391	20.535	-0.014143	360	46	1.405474	0.026760697	1.4039545	285.5969	0	5.437866						116	7	2	NaN	NaN	NaN	0.528	1	6708	6708		29.598	0	1	8808.9			9370	1753	5433	5543	7392	7392					-0.012390746536766528
HPSQLVLTL	9	Unmodified	_HPSQLVLTL_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.29784179334996	2	504.297842	1006.58113	1.3813	0.0006966	-3.0427	-0.0015344	-1.6614	-0.00083785	504.29624910404567	24.478	0.19291	24.478	24.454	24.647	0	1287	70	0.8449601	0.042439044	0.8449601	343.07224	0	17.23117						243	9	2	NaN	NaN	NaN	0.03618	1	8855	8855		52.78	13.321	1	40653			9371	4797	5434	5544	7393	7393					0.0781033333993264
HPSQLVLTL	9	Unmodified	_HPSQLVLTL_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.29784179334996	2	504.297842	1006.58113	1.1112	0.00056039	-2.3262	-0.0011731	-1.215	-0.00061273	504.2972481555226	24.526	0.12065	24.514	24.465	24.586	-0.012392	1287	106	0.8449601	0.06453234	0.84344065	343.0722	0	26.201538						214	6	4	NaN	NaN	NaN	0.048656	1	8681	8681		47.482	10.179	1	32088			9372	4797	5434	5544	7394	7394					0.0781033333993264
HPSVDSSVL	9	Unmodified	_HPSVDSSVL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.7403567042	2	470.740357	939.46616	1.661	0.00078189	-1.7079	-0.00080396	-0.046897	-2.2076E-05	470.739521197194	17.405	0.2158	17.405	17.357	17.573	0	1365	70	0.7969414	0.04256326	0.7969414	323.8871	0	17.298279						393	10	4	NaN	NaN	NaN	0.02781	1	6805	6805		61.977	23.059	1	65913			9373	2850	5435	5545	7395	7395					-0.005993958618546458
HPSVDSSVL	9	Unmodified	_HPSVDSSVL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4734369418001	1	940.473437	939.46616	1.7308	0.0016278	-0.61072	-0.00057437	1.1201	0.0010534	940.4727832977246	17.405	0.095984	17.405	17.381	17.477	0	303	85	1.4393384	0.049886942	1.4393384	292.4872	0	10.137512						132	5	2	NaN	NaN	NaN	0.094712	1	6806	6806		36.586	11.625	1	10476			9374	2850	5435	5545	7396	7396					-0.005993958618546458
HPSVDSSVL	9	Unmodified	_HPSVDSSVL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.7403567042	2	470.740357	939.46616	0.70114	0.00033006	-0.76231	-0.00035885	-0.061173	-2.8796E-05	470.73992109375376	17.426	0.21599	17.412	17.364	17.58	-0.013567	1368	76	0.7950918	0.046259463	0.79357237	323.1354	0	18.800415						374	10	4	NaN	NaN	NaN	0.049695	1	6668	6668		47.04	20.309	1	69244			9375	2850	5435	5545	7397	7397					-0.005993958618546458
HPSVDSSVL	9	Unmodified	_HPSVDSSVL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4734369418001	1	940.473437	939.46616	2.1426	0.0020151	-1.6867	-0.0015863	0.45589	0.00042875	940.4715703647744	17.426	0.095978	17.412	17.388	17.484	-0.013567	300	88	1.4411188	0.05166042	1.4395994	292.84903	0	10.497894						149	5	2	NaN	NaN	NaN	0.01047	1	6669	6669		91.429	47.126	1	13385			9376	2850	5435	5545	7398	7398					-0.005993958618546458
HPSVDSSVLL	10	Unmodified	_HPSVDSSVLL_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2823886944001	2	527.282389	1052.55022	1.5349	0.00080935	-3.0906	-0.0016296	-1.5557	-0.00082027	527.2811241667112	21.44	0.21684	21.44	21.392	21.609	0	1281	73	0.84864825	0.04425305	0.84864825	344.36667	0	17.957123						252	10	3	NaN	NaN	NaN	0.2358	1	10745	10745		32.453	16.99	1	44546			9377	2850	5436	5546	7399	7399					0.026051352350577872
HPTADVQTF	9	Unmodified	_HPTADVQTF_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.24580622285	2	508.245806	1014.47706	1.7946	0.00091211	-2.6869	-0.0013656	-0.89222	-0.00045347	508.2438270557667	16.587	0.095934	16.574	16.55	16.645	-0.012995	1353	46	0.8043377	0.027728617	0.80281824	326.54434	0	11.257233						77	5	2	NaN	NaN	NaN	0.29681	1	8971	8971		19.118	10.828	1	7153.2			9378	7901	5437	5547	7400	7400					-0.029599934875705003
HPTADVQTF	9	Unmodified						0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.245806	1014.47706	1.9039	0.00096764	-6.3444	-0.0032245	-4.4405	-0.0022569	508.24221344390855	16.542	0.095987	16.542	16.518	16.614	0	1350	61	0.80618626	0.036957502	0.80618626	327.29483		15.003967	-0.015919	-0.0020823	0.001684	NaN	19.118	103	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7447.9			9379	7901	5437	5547							-0.029599934875705003
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7327286373499	2	500.732729	999.450904	2.2715	0.0011374	-1.9245	-0.00096366	0.34701	0.00017376	500.73194180575854	14.069	0.31222	14.069	13.973	14.285	0	1341	64	0.8117308	0.038811624	0.8117308	329.6121	0	15.759888						579	14	4	NaN	NaN	NaN	0.056143	1	8557	8557		44.302	14.704	1	284680			9380	1037	5438	5548	7401	7401					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4581808080999	1	1000.45818	999.450904	2.1487	0.0021497	-0.53585	-0.00053609	1.6129	0.0016136	1000.4577123014534	14.093	0.28821	14.093	13.997	14.285	0	258	76	1.4660252	0.044449806	1.4660252	297.6518	0	9.02478						366	13	3	NaN	NaN	NaN	0.021105	1	8558	8558		70.6	39.039	1	37955			9381	1037	5438	5548	7402	7402					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7327286373499	2	500.732729	999.450904	1.6294	0.00081591	-1.4374	-0.00071978	0.19199	9.6134E-05	500.7320918063416	14.069	0.40739	14.058	13.962	14.37	-0.010672	1338	67	0.81357855	0.04065764	0.8120591	330.3624	0	16.50946						757	18	4	NaN	NaN	NaN	0.030391	1	8370	8370		58.599	27.038	1	308740			9382	1037	5438	5548	7403	7403					-0.04884307449719927
HPTDDTTTL	9	Unmodified	_HPTDDTTTL_					0	0	0		ENSG00000089327|ENST00000392219|FXYD5;ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	ENSG00000089327|ENST00000392219|FXYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4581808080999	1	1000.45818	999.450904	1.562	0.0015627	0.33126	0.00033141	1.8933	0.0018941	1000.4589937090449	14.069	0.26363	14.058	13.986	14.25	-0.010672	258	76	1.4660252	0.044449806	1.4645058	297.6518	0	9.02478						306	12	2	NaN	NaN	NaN	0.011942	1	8371	8371		87.021	50.434	1	31965			9383	1037	5438	5548	7404	7404					-0.04884307449719927
HPTDERVAL	9	Unmodified	_HPTDERVAL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2723553243501	2	519.272355	1036.53016	2.2341	0.0011601	-2.1217	-0.0011018	0.11233	5.8327E-05	519.2714767097434	14.189	0.3362	14.189	14.093	14.429	0	1290	88	0.84311575	0.053498566	0.84311575	342.18994	0	21.713104						736	15	4	NaN	NaN	NaN	0.010404	1	10068	10068		91.563	54.261	1	366230			9384	2047	5439	5549	7405	7405					0.013353842950891703
HPTDERVAL	9	Unmodified	_HPTDERVAL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2723553243501	2	519.272355	1036.53016	1.7602	0.000914	-0.92298	-0.00047928	0.83718	0.00043472	519.2720023135876	14.237	0.43119	14.225	14.106	14.537	-0.011218	1290	88	0.84311575	0.053492785	0.8415963	342.18994	0	21.710785						743	19	5	NaN	NaN	NaN	0.013696	1	9859	9859		81.699	54.968	1	348640			9385	2047	5439	5549	7406	7406					0.013353842950891703
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2698126354001	2	551.269813	1100.52507	1.3083	0.00072125	-0.70537	-0.00038885	0.60298	0.00033241	551.2694612248614	14.525	0.26402	14.525	14.477	14.741	0	1311	115	0.83019954	0.070052326	0.83019954	336.69077	0	28.410004						620	12	3	NaN	NaN	NaN	0.017076	1	12864	12864		75.698	46.1	1	124590			9386	1183	5440	5550	7407	7407					-0.021169195675156516
HPTDVDYRV	9	Unmodified	_HPTDVDYRV_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2698126354001	2	551.269813	1100.52507	1.3761	0.00075862	-1.5781	-0.00086993	-0.20191	-0.00011131	551.2689114160925	14.548	0.26357	14.537	14.489	14.752	-0.011218	1308	109	0.83204526	0.06636536	0.8305259	337.43933	0	26.914703						654	12	3	NaN	NaN	NaN	0.032826	1	12529	12529		55.413	25.815	1	126130			9387	1183	5440	5550	7408	7408					-0.021169195675156516
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7900549385	2	616.790055	1231.56556	1.3553	0.00083595	-2.3778	-0.0014666	-1.0224	-0.00063063	616.7888755243699	16.686	0.21591	16.686	16.662	16.877	0	1167	55	0.91857195	0.03306091	0.91857195	372.03998	0	13.39035						243	10	4	NaN	NaN	NaN	0.1802	1	17299	17299		37.231	18.067	1	42990			9388	1183	5441	5551	7409	7409					-0.04096321239421741
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7900549385	2	616.790055	1231.56556	1.3438	0.00082881	-1.1943	-0.00073662	0.14946	9.2188E-05	616.7893829362548	16.71	0.21591	16.71	16.662	16.877	0	1233	46	0.87812483	0.027611852	0.87812483	355.65808	0	11.18335						235	10	4	NaN	NaN	NaN	0.26776	1	17301	17301		29.706	15.281	1	38345			9389	1183	5441	5551	7410	7410					-0.04096321239421741
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.7900549385	2	616.790055	1231.56556	1.2304	0.0007589	-0.90211	-0.00055641	0.3283	0.00020249	616.7900040897217	16.73	0.21557	16.717	16.669	16.885	-0.013296	1167	58	0.91857195	0.034899533	0.9170525	372.03998	0	14.13501						274	10	4	NaN	NaN	NaN	0.047882	1	16576	16576		53.14	27.025	1	47852			9390	1183	5441	5551	7411	7411					-0.04096321239421741
HPTDVDYRVM	10	Unmodified	_HPTDVDYRVM_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.7900549385	2	616.790055	1231.56556	1.2175	0.00075097	-0.59676	-0.00036808	0.62078	0.00038289	616.7899788031648	16.73	0.1677	16.717	16.669	16.837	-0.013296	1233	49	0.87812483	0.029447913	0.8766054	355.65808	0	11.927002						259	8	4	NaN	NaN	NaN	0.14791	1	16577	16577		40.006	16.888	1	43482			9391	1183	5441	5551	7412	7412					-0.04096321239421741
HPTGKMFIL	9	Oxidation (M)	_HPTGKM(Oxidation (M))FIL_		HPTGKM(1)FIL		HPTGKM(61)FIL	0	0	1		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2864198273	2	530.28642	1058.55829	2.2676	0.0012025	-1.8851	-0.00099966	0.38244	0.0002028	530.2858617549929	17.501	0.28764	17.501	17.429	17.717	0	1272	88	0.854179	0.053452313	0.854179	346.58554	0	21.688416						669	13	4	NaN	NaN	NaN	0.028569	1	11035	11035		60.984	19.199	1	146130			9392	1600	5442	5552	7413	7413		184			0.03134990950820793
HPTGKMFIL	9	Unmodified	_HPTGKMFIL_					0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2889625162501	2	522.288963	1042.56337	1.1994	0.00062644	-2.4902	-0.0013006	-1.2907	-0.00067414	522.2885147980813	20.863	0.36117	20.849	20.704	21.065	-0.014088	1251	148	0.8670771	0.09015018	0.8655577	351.8883	0	36.585907						615	16	4	NaN	NaN	NaN	0.10363	1	10125	10125		35.296	5.6982	1	137640			9393	1600	5442	5553	7414	7414					0.04379294813429624
HPTGKMFIL	9	Unmodified						0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.288963	1042.56337	1.4174	0.00074028	-0.47514	-0.00024816	0.94223	0.00049212	522.2879321653317	20.838	0.072313	20.838	20.814	20.887	0	1251	37	0.8670771	0.022102654	0.8670771	351.88828		8.969971	-0.0051128	0.0016449	0.00075972	NaN	35.296	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3140.9			9394	1600	5442	5553							0.04379294813429624
HPTHEWQAL	9	Unmodified	_HPTHEWQAL_					0	0	0		SIL1-DNAJC18|1|fusion;ENSG00000120725|ENST00000394817|SIL1	SIL1-DNAJC18|1|fusion	SIL1-DNAJC18|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7725224998501	2	559.772522	1117.53049	2.1281	0.0011913	-0.62201	-0.00034818	1.5061	0.00084308	559.7723719221312	16.035	0.31156	16.023	15.927	16.238	-0.012611	1257	73	0.86339295	0.044214845	0.8618735	350.0866	0	17.9281						342	14	2	NaN	NaN	NaN	0.33629	1	13179	13179		16.584	8.2939	1	67904			9395	2271	5443	5554	7415	7415					-0.023571959850414714
HPTHEWQAL	9	Unmodified						0	0	0		SIL1-DNAJC18|1|fusion;ENSG00000120725|ENST00000394817|SIL1	SIL1-DNAJC18|1|fusion	SIL1-DNAJC18|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.772522	1117.53049	1.7823	0.0009977	-1.3057	-0.00073088	0.47665	0.00026682	559.7716582575579	15.822	0.28783	15.822	15.822	16.11	0	1257	97	0.86339295	0.05894041	0.86339295	350.0866		23.899017	-0.10026	-0.00036102	0.00075972	NaN	16.584	328	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62883			9396	2271	5443	5554							-0.023571959850414714
HPTIISESF	9	Unmodified	_HPTIISESF_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7638318005	2	515.763832	1029.51311	1.7413	0.00089809	-1.9956	-0.0010293	-0.25435	-0.00013118	515.7628078005475	21.296	0.16841	21.296	21.248	21.416	0	1317	61	0.8265074	0.036925495	0.8265074	335.4792	0	14.988037						204	8	3	NaN	NaN	NaN	0.056143	1	9753	9753		44.302	7.7159	1	26738			9397	2025	5444	5555	7416	7416					-0.00046536310719602625
HPTLKGTWQS	10	Unmodified	_HPTLKGTWQS_					0	0	0		ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB	ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8012799393001	2	577.80128	1153.58801	1.9767	0.0011422	-1.3778	-0.00079608	0.59895	0.00034607	578.3023801294541	17.381	0.14394	17.381	17.333	17.477	0	1254	82	0.8652351	0.049717486	0.8652351	350.69992	0	20.151642						185	7	3	NaN	NaN	NaN	0.47601	1	14928	14928		20.449	0	1	23274			9398	1	5445	5556	7417	7417					0.017356462205270873
HPTLKGTWQS	10	Unmodified						0	0	0		ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB	ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.80128	1153.58801	1.6869	0.0009747	-1.5784	-0.00091202	0.10848	6.2682E-05	577.800356210268	17.546	0.23986	17.532	17.436	17.676	-0.013567	1251	58	0.8670771	0.034993947	0.8655577	351.44653		14.183868	0.07556	-9.1167E-05	0.00016127	NaN	20.449	234	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36908			9399	1	5445	5556							0.017356462205270873
HPTPELWTL	9	Unmodified	_HPTPELWTL_					0	0	0		ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2874740723	2	547.287474	1092.5604	1.8917	0.0010353	-3.6822	-0.0020152	-1.7905	-0.00097992	547.2864798584286	26.022	0.14483	26.022	25.974	26.119	0	1272	67	0.854179	0.04054779	0.854179	346.447	0	16.4458						174	7	3	NaN	NaN	NaN	0.056143	1	12509	12509		44.302	2.5178	1	34778			9400	4454	5446	5557	7418	7418					0.01781742960270094
HPTSGVIVL	9	Unmodified	_HPTSGVIVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.77145986734996	2	461.77146	921.528367	0.78263	0.00036139	-1.1342	-0.00052374	-0.35158	-0.00016235	461.7713834861135	21.127	0.096331	21.127	21.079	21.175	0	1356	49	0.8024889	0.029575586	0.8024889	326.2332	0	12.023254						118	5	3	NaN	NaN	NaN	0.078597	1	6438	6438		38.918	12.186	1	11457			9401	952	5447	5558	7419	7419					0.064463752771303
HPTSGVIVL	9	Unmodified	_HPTSGVIVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.77145986734996	2	461.77146	921.528367	0.71023	0.00032796	-0.111	-5.1259E-05	0.59923	0.00027671	461.77100180998326	21.152	0.12042	21.138	21.089	21.21	-0.014004	1356	46	0.8024889	0.027728617	0.8009695	326.2332	0	11.2724						90	6	2	NaN	NaN	NaN	0.078597	1	6319	6319		38.918	18.362	1	10171			9402	952	5447	5558	7420	7420					0.064463752771303
HPTTAEIDL	9	Unmodified	_HPTTAEIDL_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.75346407945	2	498.753464	995.492375	1.7226	0.00085915	-1.4814	-0.00073885	0.24119	0.00012029	498.7529701373858	19.132	0.19199	19.132	19.084	19.276	0	1323	82	0.8228144	0.049895287	0.8228144	334.13077	0	20.261627						185	9	3	NaN	NaN	NaN	0.062072	1	8407	8407		41.785	12.186	1	21740			9403	1152	5448	5559	7421	7421					-0.0055512669038080276
HPTTMSVL	8	Unmodified	_HPTTMSVL_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.22857059740005	2	443.228571	884.442588	1.5746	0.00069792	-3.1917	-0.0014146	-1.617	-0.00071672	443.2270481396541	18.772	0.14401	18.772	18.748	18.892	0	1338	64	0.81357855	0.03880751	0.81357855	330.94504	0	15.78598						172	7	2	NaN	NaN	NaN	0.79379	1	5859	5859		10.052	0.92837	1	20126	+		9404	10287	5449	5560	7422	7422					-0.004255329000216079
HPTTTEYTF	9	Unmodified	_HPTTTEYTF_					0	0	0		L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7509213905	2	548.750921	1095.48729	1.7345	0.00095179	-1.1578	-0.00063534	0.57668	0.00031645	548.7501318276289	17.693	0.095911	17.693	17.645	17.741	0	1314	79	0.8283535	0.04797715	0.8283535	335.96124	0	19.458466						146	5	3	NaN	NaN	NaN	0.12945	1	12633	12633		31.561	12.443	1	20727			9405	7849	5450	5561	7423	7423					-0.05663430552999671
HPTTTEYTF	9	Unmodified	_HPTTTEYTF_					0	0	0		L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|1|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7509213905	2	548.750921	1095.48729	1.8098	0.00099315	-0.92873	-0.00050964	0.8811	0.00048351	548.7505187033843	17.762	0.21574	17.748	17.652	17.868	-0.013786	1317	91	0.8265074	0.05537027	0.82498795	335.21246	0	22.45691						365	10	4	NaN	NaN	NaN	0.12945	1	12308	12308		31.561	6.6	1	41901			9406	7849	5450	5561	7424	7424					-0.05663430552999671
HPTWGDEQL	9	Unmodified	_HPTWGDEQL_					0	0	0		nc|ENSG00000095303|P23219-4|PTGS1;nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-4|PTGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7487130525501	2	541.748713	1081.48287	1.6855	0.00091312	-0.23637	-0.00012805	1.4491	0.00078507	541.7489926339568	19.18	0.23992	19.18	19.06	19.3	0	1287	55	0.8449601	0.03319341	0.8449601	342.7516	0	13.464661						262	11	3	NaN	NaN	NaN	0.31737	1	12038	12038		17.799	2.6236	1	30883			9407	1122	5451	5562	7425	7425					-0.054608949758858216
HPVEESIIIP	10	Unmodified	_HPVEESIIIP_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3136888228001	2	567.313689	1132.61282	2.0118	0.0011413	-2.6574	-0.0015076	-0.64557	-0.00036624	567.3120000793202	23.562	0.14458	23.562	23.513	23.658	0	1239	115	0.87444305	0.06996149	0.87444305	354.50964	0	28.36322						290	7	3	NaN	NaN	NaN	0.56921	1	14197	14197		16.584	3.5813	1	28753			9408	2923	5452	5563	7426	7426					0.051822813032458726
HPVEESIIIP	10	Unmodified						0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.313689	1132.61282	1.9947	0.0011316	-1.9058	-0.0010812	0.088929	5.0451E-05	567.3131759427465	23.609	0.096478	23.596	23.548	23.645	-0.013048	1284	28	0.8468043	0.01659578	0.8452849	343.30457		6.7281494	0.017418	0.00047784	-0.014579	NaN	16.584	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5432.4			9409	2923	5452	5563							0.051822813032458726
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.30820951440006	2	509.30821	1016.60187	1.838	0.00093612	-1.9006	-0.000968	-0.062579	-3.1872E-05	509.3071112402888	15.606	0.12008	15.606	15.558	15.678	0	1296	37	0.8394264	0.022138536	0.8394264	340.7801	0	8.987518						161	6	3	NaN	NaN	NaN	0.077759	1	9252	9252		39.039	18.59	1	22576			9410	2447	5453	5564	7427	7427					0.09422923719614573
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.30820951440006	2	509.30821	1016.60187	1.8156	0.00092467	-1.2405	-0.00063178	0.57509	0.0002929	509.30768364761815	15.606	0.14413	15.606	15.558	15.702	0	1167	46	0.91857195	0.027546287	0.91857195	372.91064	0	11.182922						158	7	3	NaN	NaN	NaN	0.054111	1	9253	9253		45.165	22.047	1	15564			9411	2447	5453	5564	7428	7428					0.09422923719614573
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.30820951440006	2	509.30821	1016.60187	1.6818	0.00085655	-1.8628	-0.00094872	-0.18097	-9.2172E-05	509.3072818123685	15.724	0.16777	15.711	15.663	15.831	-0.012611	1167	55	0.91857195	0.03305739	0.9170525	372.91064	0	13.420227						169	8	2	NaN	NaN	NaN	0.097143	1	9075	9075		36.235	18.436	1	18293			9412	2447	5453	5564	7429	7429					0.09422923719614573
HPVEKPVVL	9	Unmodified	_HPVEKPVVL_					0	0	0		ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	ENSG00000125149|ENST00000219139|PHAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.30820951440006	2	509.30821	1016.60187	1.6731	0.0008521	-1.1185	-0.00056968	0.55452	0.00028242	509.30719169640116	15.724	0.1678	15.711	15.639	15.807	-0.012611	1296	46	0.8394264	0.027668655	0.83790696	340.7801	0	11.232574						197	8	3	NaN	NaN	NaN	0.04743	1	9076	9076		48.002	19.107	1	25200			9413	2447	5453	5564	7430	7430					0.09422923719614573
HPVFQQESF	9	Unmodified	_HPVFQQESF_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7669058057	2	559.766906	1117.51926	1.5051	0.00084253	-1.4711	-0.00082348	0.034025	1.9046E-05	559.7663302509661	19.346	0.12013	19.332	19.308	19.428	-0.014141	1263	61	0.85970795	0.03684169	0.8581885	348.59247	0	14.938507						134	6	2	NaN	NaN	NaN	0.47587	1	13172	13172		10.605	0.85897	1	15187			9414	4726	5454	5565	7431	7431					-0.03480018079198999
HPVFQQESF	9	Unmodified						0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.766906	1117.51926	1.5865	0.00088808	-2.3513	-0.0013162	-0.76472	-0.00042807	559.7652877570479	19.324	0.16797	19.324	19.276	19.444	0	1260	49	0.8615505	0.029476583	0.8615505	349.3396		11.952057	-0.0039726	-0.00056435	0.001681	NaN	10.605	135	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14976			9415	4726	5454	5565							-0.03480018079198999
HPVGEASIL	9	Unmodified	_HPVGEASIL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.7532671142	2	461.753267	921.491981	1.5863	0.0007325	-1.2365	-0.00057096	0.34984	0.00016154	461.75302907706396	18.652	0.16788	18.652	18.604	18.772	0	1344	61	0.8098828	0.036981463	0.8098828	329.2392	0	15.033997						181	8	3	NaN	NaN	NaN	0.078597	1	6437	6437		38.918	0	1	18344			9416	974	5455	5566	7432	7432					0.028094983804294316
HPVGTDEEPL	10	Unmodified	_HPVGTDEEPL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2616532523	2	547.261653	1092.50875	2.0275	0.0011096	0.052625	2.88E-05	2.0801	0.0011384	547.261876884376	16.347	0.071926	16.334	16.262	16.334	-0.012995	1296	52	0.8394264	0.031361163	0.83790696	340.46365	0	12.719818						91	4	3	NaN	NaN	NaN	0.5081	1	12181	12181		19.118	5.0767	1	9632.7			9417	2021	5456	5567	7433	7433					-0.03380045524295383
HPVHPDIKL	9	Unmodified	_HPVHPDIKL_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.3034584875	2	528.303458	1054.59236	1.5507	0.00081924	-2.7307	-0.0014426	-1.18	-0.00062339	528.3020571953612	15.342	0.12013	15.342	15.294	15.414	0	1275	79	0.85233563	0.04793048	0.85233563	345.8543	0	19.448883						157	6	2	NaN	NaN	NaN	0.030669	1	10855	10855		58.235	25.783	1	18506			9418	501	5457	5568	7434	7434					0.06725155434082808
HPVHPDIKL	9	Unmodified	_HPVHPDIKL_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.5380644805333	3	352.538064	1054.59236	1.8503	0.00065231	-2.4376	-0.00085934	-0.58724	-0.00020702	352.5373434276806	15.318	0.21628	15.318	15.27	15.486	0	1458	58	0.7395112	0.03526026	0.7395112	450.10434	0	21.461212						347	10	4	NaN	NaN	NaN	0.032826	1	10856	10856		41.839	22.502	1	97051			9419	501	5457	5568	7435	7435					0.06725155434082808
HPVHPDIKL	9	Unmodified						0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	352.538064	1054.59236	2.3143	0.00081587	-1.844	-0.00065007	0.47032	0.00016581	352.5374836298088	15.652	0.43142	15.639	15.471	15.903	-0.012611	1458	49	0.7395112	0.02969122	0.73799175	450.10434		18.071594	0.16077	0.0003286	-0.00075972	NaN	41.839	428	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110490			9420	501	5457	5568							0.06725155434082808
HPVKIGDLF	9	Unmodified	_HPVKIGDLF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2925594502	2	513.292559	1024.57057	2.3072	0.0011842	-2.8064	-0.0014405	-0.49925	-0.00025626	513.2909394501376	21.97	0.2411	21.97	21.922	22.163	0	1206	55	0.894683	0.033103883	0.894683	363.17477	0	13.437714						328	11	4	NaN	NaN	NaN	0.03618	1	9567	9567		52.78	26.665	1	127920			9421	2925	5458	5569	7436	7436					0.059263506854904335
HPVKIGDLF	9	Unmodified	_HPVKIGDLF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2925594502	2	513.292559	1024.57057	1.1835	0.00060747	-1.0389	-0.00053329	0.14454	7.4189E-05	513.2919337209786	22.091	0.26517	22.077	22.005	22.27	-0.013731	1209	58	0.892844	0.034944832	0.8913246	362.42825	0	14.184998						431	12	4	NaN	NaN	NaN	0.030696	1	9382	9382		58.2	23.761	1	117640			9422	2925	5458	5569	7437	7437					0.059263506854904335
HPVNLTWPFV	10	Unmodified	_HPVNLTWPFV_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.3243908948499	2	605.324391	1208.63423	1.3381	0.00081	-11.039	-0.0066821	-9.7008	-0.0058721	605.3180134729271	19.226	0.21629	19.212	19.14	19.356	-0.014141	1149	79	0.92958635	0.047728956	0.9280669	376.58023	0	19.335236						562	10	5	NaN	NaN	NaN	0.24484	1	16027	16027		31.675	9.8405	1	135620			9423	5129	5459	5570	7438	7438					0.038257111225675544
HPVQIQTQL	9	Unmodified	_HPVQIQTQL_					0	0	0		ENST00000554557.5_1_14:68248216-68272009:-|nuORF;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2983731096001	2	532.298373	1062.58219	1.581	0.00084156	-2.8899	-0.0015383	-1.3089	-0.00069671	532.2971503866273	18.434	0.07205	18.42	18.372	18.444	-0.01395	1272	52	0.854179	0.031334043	0.8526596	346.5687	0	12.713287						88	4	3	NaN	NaN	NaN	0.16171	1	10994	10994		27.789	7.2755	1	10571			9424	787	5460	5571	7439	7439					0.05340547708851773
HPVQQGLPQH	10	Unmodified	_HPVQQGLPQH_					0	0	0			REV__COL8A1|p.Y51H|1|0.17|ENSG00000144810|chr3:99790833-99790833|T/C|missense_variant	REV__COL8A1|p.Y51H|1|0.17|ENSG00000144810|chr3:99790833-99790833|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7990716013501	2	570.799072	1139.58359	1.8614	0.0010625	-11.339	-0.0064726	-9.4781	-0.0054101	571.2949602604862	16.347	0.071949	16.334	16.286	16.358	-0.012995	1179	40	0.9112251	0.02388376	0.90970564	369.39438	0	9.682068						76	4	2	NaN	NaN	NaN	0.68669	1	13961	13961		8.962	0.042884	1	7629.9	+		9425	8251	5461	5572	7440	7440					0.019381817976181992
HPVQQGLPQH	10	Unmodified	_HPVQQGLPQH_					0	0	0			REV__COL8A1|p.Y51H|1|0.17|ENSG00000144810|chr3:99790833-99790833|T/C|missense_variant	REV__COL8A1|p.Y51H|1|0.17|ENSG00000144810|chr3:99790833-99790833|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7990716013501	2	570.799072	1139.58359	1.7154	0.00097914	-10.033	-0.0057268	-8.3175	-0.0047476	570.7928578830986	16.419	0.095943	16.406	16.382	16.478	-0.012995	1176	34	0.9130621	0.020207167	0.91154265	370.13907	0	8.19162						83	5	2	NaN	NaN	NaN	0.68669	1	13962	13962		8.962	0.042884	1	10319	+		9426	8251	5461	5572	7441	7441					0.019381817976181992
HPVSELIYI	9	Unmodified	_HPVSELIYI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.79767461785	2	535.797675	1069.5808	2.2944	0.0012294	-1.7705	-0.00094861	0.52397	0.00028074	535.7999341779961	25.66	0.04829	25.66	25.636	25.684	0	1245	88	0.87076044	0.05340606	0.87076044	353.26675	0	21.666779						153	3	3	NaN	NaN	NaN	0.17818	1	11559	11559		26.732	3.3971	1	28025			9427	2597	5462	5573	7442	7442					0.04878913620086678
HPVSELIYI	9	Unmodified	_HPVSELIYI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.79767461785	2	535.797675	1069.5808	1.6532	0.00088578	1.5544	0.00083286	3.2076	0.0017186	535.7997997737057	25.684	0.072382	25.672	25.648	25.721	-0.0116	1245	79	0.87076044	0.047878683	0.869241	353.26675	0	19.424347						144	4	2	NaN	NaN	NaN	0.12945	1	11267	11267		31.561	6.999	1	28246			9428	2597	5462	5573	7443	7443					0.04878913620086678
HPVSLEQYL	9	Unmodified	_HPVSLEQYL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2849313833501	2	543.284931	1084.55531	1.7847	0.00096959	-2.7897	-0.0015156	-1.005	-0.00054599	543.2831717433153	23.875	0.24101	23.875	23.778	24.019	0	1260	94	0.8615505	0.057113945	0.8615505	349.46893	0	23.167023						531	11	4	NaN	NaN	NaN	0.036546	1	12168	12168		52.624	16.879	1	149660			9429	1155	5463	5574	7444	7444					0.016414390976706272
HPVSLEQYL	9	Unmodified	_HPVSLEQYL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2849313833501	2	543.284931	1084.55531	1.7986	0.00097713	-1.7537	-0.00095278	0.044823	2.4352E-05	543.2836284567837	23.923	0.26533	23.91	23.837	24.103	-0.013048	1260	91	0.8615505	0.055274546	0.8600311	349.46893	0	22.420898						501	12	5	NaN	NaN	NaN	0.021105	1	11853	11853		70.6	39.039	1	133790			9430	1155	5463	5574	7445	7445					0.016414390976706272
HPVSREWTL	9	Unmodified	_HPVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.7959975961501	2	562.795998	1123.57744	2.6532	0.0014932	-1.2289	-0.00069159	1.4244	0.00080164	562.7953161058715	17.309	0.40753	17.309	17.237	17.645	0	1224	97	0.883646	0.058921278	0.883646	358.27527	0	23.88971						1113	18	5	NaN	NaN	NaN	0.026469	1	13830	13830		63.731	32.055	1	864110			9431	7185	5464	5575	7446	7446					0.020596635660922402
HPVSREWTL	9	Unmodified	_HPVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.7959975961501	2	562.795998	1123.57744	2.522	0.0014194	-1.3746	-0.0007736	1.1474	0.00064576	562.7953697527726	17.498	0.43177	17.484	17.34	17.772	-0.013569	1224	106	0.883646	0.06444168	0.88212657	358.27527	0	26.12793						1233	19	5	NaN	NaN	NaN	0.022185	1	13403	13403		69.233	35.808	1	905630			9432	7185	5464	5575	7447	7447					0.020596635660922402
HPVSTAFSS	9	Unmodified	_HPVSTAFSS_					0	0	0		ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.4472221913	1	932.447222	931.439946	1.9487	0.001817	1.3704	0.0012778	3.3191	0.0030949	932.4494869929515	54.548	0.072296	54.548	54.548	54.62	0	327	43	1.425088	0.024946213	1.425088	289.62744	0	5.069916						65	4	2	NaN	NaN	NaN	0.66196	1	6625	6625		2.4615	0.28518	1	4504.2			9433	6351	5465	5576	7448	7448					-0.028516650333358484
HPVTWVELGS	10	Unmodified	_HPVTWVELGS_					0	0	0		nc|ENSG00000130518|Q9H0B3-3|IQCN;ENST00000599638.2_1_19:18367992-18369432:-|nuORF;nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-3|IQCN	nc|ENSG00000130518|Q9H0B3-3|IQCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.790380902	2	562.790381	1123.56621	1.9367	0.0010899	7.5284	0.0042369	9.4651	0.0053269	562.7944497080366	17.858	0.071947	17.844	17.82	17.892	-0.013786	1227	52	0.88180584	0.031286716	0.8802864	357.52917	0	12.685211						80	4	2	NaN	NaN	NaN	0.69717	1	13402	13402		8.2448	0.65722	1	10872			9434	2647	5466	5577	7449	7449					0.009368414719347129
HPWFESVL	8	Unmodified	_HPWFESVL_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.75580980315004	2	507.75581	1013.49707	0.93863	0.00047659	-0.65556	-0.00033286	0.28307	0.00014373	507.75580062652386	27.663	0.14476	27.653	27.605	27.75	-0.009552	1299	40	0.8375814	0.02398467	0.83606195	340.045	0	9.737427						132	7	3	NaN	NaN	NaN	0.46176	1	8939	8939		33.137	11.302	1	12422			9435	4887	5467	5578	7450	7450					-0.009141977569470328
HPWLPRSGN	9	Unmodified	_HPWLPRSGN_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2752323643001	2	532.275232	1062.53591	1.5454	0.00082257	7.3671	0.0039213	8.9125	0.0047439	532.2791530600631	13.06	0.096071	13.06	13.036	13.132	0	1287	46	0.8449601	0.027671635	0.8449601	342.82843	0	11.227325						70	5	2	NaN	NaN	NaN	0.63698	1	11234	11234		3.9685	0.39873	1	5226.2			9436	5248	5468	5579	7451	7451					0.0071452759741532645
HPWMQDVLL	9	Unmodified	_HPWMQDVLL_					0	0	0		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.7893266570001	2	569.789327	1137.5641	2.1465	0.0012231	0.21528	0.00012266	2.3618	0.0013457	569.7897041615214	27.905	0.3378	27.905	27.76	28.098	0	1206	76	0.894683	0.045970082	0.894683	362.69617	0	18.635834						640	15	4	NaN	NaN	NaN	0.062072	1	14369	14369		41.785	15.053	1	227800			9437	3073	5469	5580	7452	7452					0.0008208946248942084
HPWMQDVLL	9	Unmodified	_HPWMQDVLL_					0	0	0		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.7893266570001	2	569.789327	1137.5641	1.2214	0.00069595	0.87634	0.00049933	2.0978	0.0011953	569.7898372537875	27.928	0.28963	27.919	27.798	28.088	-0.009552	1203	73	0.8965218	0.044128895	0.89500237	363.4416	0	17.889435						624	13	4	NaN	NaN	NaN	0.10956	1	13902	13902		34.439	13.883	1	218390			9438	3073	5469	5580	7453	7453					0.0008208946248942084
HPWMQDVLL	9	Oxidation (M)	_HPWM(Oxidation (M))QDVLL_		HPWM(1)QDVLL		HPWM(50)QDVLL	0	0	1		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.78678396805	2	577.786784	1153.55902	1.7144	0.00099055	-1.763	-0.0010187	-0.048657	-2.8113E-05	577.7865866110507	24.188	0.072433	24.188	24.14	24.213	0	1206	73	0.894683	0.04411459	0.894683	362.63596	0	17.880707						313	4	6	NaN	NaN	NaN	0.043119	1	14921	14921		49.833	20.235	1	123800			9439	3073	5469	5581	7454	7454		346			-0.011622144001421475
HPWMQDVLL	9	Oxidation (M)	_HPWM(Oxidation (M))QDVLL_		HPWM(1)QDVLL		HPWM(42)QDVLL	0	0	1		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1;ENST00000479509.1_1_6:37140348-37141864:+|nuORF	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.78678396805	2	577.786784	1153.55902	1.4704	0.00084958	-2.5182	-0.001455	-1.0478	-0.00060541	577.7860768539599	24.212	0.048264	24.199	24.175	24.224	-0.012749	1206	88	0.894683	0.05330801	0.89316356	362.63596	0	21.606995						248	3	5	NaN	NaN	NaN	0.062072	1	14427	14427		41.785	15.053	1	81509			9440	3073	5469	5581	7455	7455		346			-0.011622144001421475
HPWPCPQL	8	Unmodified	_HPWPCPQL_					0	0	0			REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF	REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.2367299805	2	489.23673	976.458907	1.7961	0.00087872	-1.5595	-0.00076295	0.23663	0.00011577	489.23628177962473	24.985	0.12066	24.985	24.96	25.081	0	1347	28	0.8080346	0.01663357	0.8080346	328.2161	0	6.7564087						71	6	2	NaN	NaN	NaN	0.84207	1	7790	7790		3.5732	0.41988	1	4622.1	+		9441	11775	5470	5582	7456	7456					-0.03026406943274651
HPWQLTVI	8	Unmodified	_HPWQLTVI_					0	0	0		ENST00000529498.1_1_11:124545562-124545739:+|nuORF	ENST00000529498.1_1_11:124545562-124545739:+|nuORF	ENST00000529498.1_1_11:124545562-124545739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.2794520749499	2	497.279452	992.544351	2.0836	0.0010361	-8.3233	-0.004139	-6.2397	-0.0031029	497.2753577432565	13.541	0.096108	13.541	13.493	13.589	0	1299	34	0.8375814	0.020296931	0.8375814	340.14117	0	8.242584						68	5	2	NaN	NaN	NaN	0.78967	1	8323	8323		10.605	0	1	6073.2			9442	7445	5471	5583	7457	7457					0.04778081514018595
HPWQLTVI	8	Unmodified						0	0	0		ENST00000529498.1_1_11:124545562-124545739:+|nuORF	ENST00000529498.1_1_11:124545562-124545739:+|nuORF	ENST00000529498.1_1_11:124545562-124545739:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.279452	992.544351	1.5012	0.00074649	-3.8455	-0.0019123	-2.3443	-0.0011658	497.2781127425762	13.565	0.095925	13.555	13.531	13.627	-0.010098	1293	31	0.84127116	0.018444777	0.8397517	341.63956		7.4904175	0.0073105	0.0024414	0.0010852	NaN	10.605	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4106			9443	7445	5471	5583							0.04778081514018595
HPWTRLLNF	9	Unmodified	_HPWTRLLNF_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000016285	REV__CON__ENSEMBL:ENSBTAP00000016285	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3221825569001	2	592.322183	1182.62981	0.75241	0.00044567	-2.5634	-0.0015183	-1.811	-0.0010727	592.3203789385083	30.752	0.16887	30.746	30.698	30.866	-0.0057545	1164	64	0.9204082	0.038552344	0.91888875	372.95462	0	15.621643						247	8	3	NaN	NaN	NaN	0.18779	1	15327	15327		26.115	1.5529	1	42413	+	+	9444	8255	5472	5584	7458	7458					0.045802466996974545
HPYFYAPELL	10	Unmodified	_HPYFYAPELL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;CON__P02769	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.3162315117501	2	625.316232	1248.61791	1.8519	0.001158	-2.6842	-0.0016785	-0.83226	-0.00052042	625.3146846504309	28.146	0.14479	28.146	28.122	28.267	0	1116	82	0.94976085	0.04951924	0.94976085	384.61386	0	20.053253						360	7	3	NaN	NaN	NaN	0.16057	1	17742	17742		38.918	22.334	1	53405		+	9445	192	5473	5585	7459	7459					0.0035458516586004407
HPYFYAPELL	10	Unmodified	_HPYFYAPELL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;CON__P02769	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3162315117501	2	625.316232	1248.61791	0.78874	0.00049321	-3.1749	-0.0019853	-2.3862	-0.0014921	625.3143463603014	28.194	0.21721	28.185	28.064	28.281	-0.0089779	1116	94	0.94976085	0.05686772	0.9482414	384.61386	0	23.029053						390	10	4	NaN	NaN	NaN	0.47344	1	16996	16996		20.555	6.1304	1	51829		+	9446	192	5473	5585	7460	7460					0.0035458516586004407
HPYFYAPELLF	11	Unmodified	_HPYFYAPELLF_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.85043846985	2	698.850438	1395.68632	0.80144	0.00056008	-3.2355	-0.0022611	-2.434	-0.001701	698.8478372659123	32.249	0.14481	32.249	32.225	32.37	0	1077	79	0.9735726	0.047574818	0.9735726	393.80194	0	19.243622						245	7	3	NaN	NaN	NaN	0.36851	1	20027	20027		39.459	22.875	1	22536		+	9447	192	5474	5586	7461	7461					0.004308297456873333
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.76330887175	2	556.763309	1111.51206	1.8919	0.0010533	-2.8058	-0.0015621	-0.91389	-0.00050882	556.7617278369786	13.493	0.28818	13.493	13.421	13.709	0	1287	55	0.8449601	0.033189833	0.8449601	342.6351	0	13.458618						319	13	4	NaN	NaN	NaN	0.032409	1	13334	13334		55.958	38.159	1	56609			9448	3336	5475	5587	7462	7462					-0.039230739512731816
HPYQPDPKM	9	Unmodified	_HPYQPDPKM_					0	0	0		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.76330887175	2	556.763309	1111.51206	1.2908	0.00071866	-1.375	-0.00076556	-0.084234	-4.6898E-05	556.7626664645537	13.517	0.26389	13.507	13.435	13.699	-0.010098	1284	58	0.8468043	0.03502804	0.8452849	343.38293	0	14.20401						326	12	4	NaN	NaN	NaN	0.011167	1	12957	12957		89.374	49.915	1	54582			9449	3336	5475	5587	7463	7463					-0.039230739512731816
HPYQPDPKM	9	Oxidation (M)	_HPYQPDPKM(Oxidation (M))_		HPYQPDPKM(1)		HPYQPDPKM(78)	0	0	1		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.7607661828	2	564.760766	1127.50698	2.3874	0.0013483	-3.3087	-0.0018686	-0.92131	-0.00052032	564.7589321737332	11.644	0.31207	11.644	11.548	11.86	0	1284	55	0.8468043	0.033186257	0.8468043	343.32327	0	13.454803						414	14	4	NaN	NaN	NaN	0.015447	1	13991	13991		77.761	49.972	1	78442			9450	3336	5475	5588	7464	7464		373			-0.0516737781390475
HPYQPDPKM	9	Oxidation (M)	_HPYQPDPKM(Oxidation (M))_		HPYQPDPKM(1)		HPYQPDPKM(58)	0	0	1		ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	ENSG00000141582|ENST00000269397|CBX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7607661828	2	564.760766	1127.50698	1.3814	0.00078017	-1.9637	-0.001109	-0.58231	-0.00032886	564.7598458513686	11.598	0.26409	11.59	11.518	11.782	-0.0075302	1284	73	0.8468043	0.044238746	0.8452849	343.32327	0	17.935913						469	12	4	NaN	NaN	NaN	0.030545	1	13547	13547		58.398	39.234	1	88319			9451	3336	5475	5588	7465	7465		373			-0.0516737781390475
HQAAGGAL	8	Unmodified	_HQAAGGAL_					0	0	0		ENST00000556626.5_3_14:65269000-65271771:-|nuORF	ENST00000556626.5_3_14:65269000-65271771:-|nuORF	ENST00000556626.5_3_14:65269000-65271771:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3736633176999	1	724.373663	723.366387	1.4782	0.0010708	-9.9936	-0.0072391	-8.5154	-0.0061684	724.3670116783235	30.824	0.072344	30.818	30.746	30.818	-0.0057564	690	67	1.2080631	0.039693356	1.2065437	246.54683	0	8.1008						74	4	2	NaN	NaN	NaN	0.84692	1	3581	3581		1.4396	0	1	4830.6			9452	7575	5476	5589	7466	7466					-0.006361686851619197
HQAAGGAL	8	Unmodified						0	0	0		ENST00000556626.5_3_14:65269000-65271771:-|nuORF	ENST00000556626.5_3_14:65269000-65271771:-|nuORF	ENST00000556626.5_3_14:65269000-65271771:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.373663	723.366387	0.95068	0.00068864	-2.5938	-0.0018789	-1.6431	-0.0011902	724.3720059671393	30.825	0.048279	30.825	30.777	30.825	0	693	49	1.2062578	0.028889537	1.2062578	246.17836		5.8958893	0.0034358	0.0027316	-0.00014293	NaN	1.4396	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3527.1			9453	7575	5476	5589							-0.006361686851619197
HQAAPQPAQPQ	11	Unmodified	_HQAAPQPAQPQ_					0	0	0		ENST00000430724.2_1_1:40598436-40598604:+|nuORF	ENST00000430724.2_1_1:40598436-40598604:+|nuORF	ENST00000430724.2_1_1:40598436-40598604:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.79398622345	2	586.793986	1171.57342	2.1001	0.0012323	-0.62873	-0.00036894	1.4714	0.00086339	586.7946981167545	23.296	0.07238	23.296	23.272	23.345	0	1203	73	0.8965218	0.04411459	0.8965218	363.31525	0	17.877441						146	4	3	NaN	NaN	NaN	0.7072	1	15541	15541		6.9844	1.2902	1	19107			9454	6968	5477	5590	7467	7467					-0.005504259276449375
HQCDHCERCF	10	Unmodified	_HQCDHCERCF_					0	0	0		nc|ENSG00000118495|Q9UM63-2|PLAGL1;ENSG00000118495|ENST00000674357|PLAGL1	nc|ENSG00000118495|Q9UM63-2|PLAGL1	nc|ENSG00000118495|Q9UM63-2|PLAGL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.2340666808	2	639.234067	1276.45358	2.2254	0.0014226	-10.543	-0.0067396	-8.3179	-0.0053171	639.2282267809904	26.022	0.12067	26.022	25.95	26.07	0	1167	52	0.91857195	0.031219184	0.91857195	371.89496	0	12.639465						185	6	5	NaN	NaN	NaN	0.72369	1	18343	18343		6.4299	1.7009	1	24875			9455	2179	5478	5591	7468	7468					-0.17358821859716045
HQCFNRFCLQ	10	Unmodified	_HQCFNRFCLQ_					0	0	0			REV__ENST00000511435.1_1_5:145175975-145197459:-|nuORF	REV__ENST00000511435.1_1_5:145175975-145197459:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.5305867383334	3	432.530587	1294.56993	1.4268	0.00061713	5.9707	0.0025825	7.3975	0.0031996	432.53269038403664	21.802	0.14453	21.802	21.778	21.922	0	1449	43	0.74507743	0.025971413	0.74507743	452.4088	0	15.769745						120	7	2	NaN	NaN	NaN	0.67523	1	18668	18668		5.0169	0.80631	1	20311	+		9456	12559	5479	5592	7469	7469					-0.06557135297475725
HQEEQEET	8	Unmodified	_HQEEQEET_					0	0	0		ENSG00000197915|ENST00000368801|HRNR;CON__Q86YZ3	ENSG00000197915|ENST00000368801|HRNR	ENSG00000197915|ENST00000368801|HRNR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2096176818001	2	515.209618	1028.40468	2.1454	0.0011053	5.7831	0.0029795	7.9285	0.0040848	515.2128373617526	25.853	0.096565	25.841	25.793	25.89	-0.0116	1329	67	0.81912065	0.040635645	0.8176012	332.48563	0	16.494232						102	5	2	NaN	NaN	NaN	0.83582	1	9504	9504		4.4131	1.6279	1	6936.8		+	9457	223	5480	5593	7470	7470					-0.108383723517818
HQEPSNMKR	9	Unmodified	_HQEPSNMKR_					0	0	0		ENST00000452148.2_1_9:97321391-97329922:+|nuORF	ENST00000452148.2_1_9:97321391-97329922:+|nuORF	ENST00000452148.2_1_9:97321391-97329922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.542201984	1	1126.5422	1125.53493	2.0032	0.0022567	-3.3729	-0.0037997	-1.3697	-0.001543	1126.5393601705996	29.136	0.072411	29.136	29.136	29.208	0	78	58	1.5723488	0.033553362	1.5723488	318.75204	0	6.8020325						65	4	2	NaN	NaN	NaN	0.51576	1	13897	13897		8.962	1.9776	1	4488.5			9458	7042	5481	5594	7471	7471					-0.022820548337904256
HQFLLDLHF	9	Unmodified	_HQFLLDLHF_					0	0	0			REV__RUSC1|p.E666Q|1|0.21|ENSG00000160753|chr1:155326714-155326714|G/C|missense_variant	REV__RUSC1|p.E666Q|1|0.21|ENSG00000160753|chr1:155326714-155326714|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3087408306501	2	585.308741	1168.60293	2.0042	0.0011731	2.046	0.0011975	4.0502	0.0023706	585.3110813064385	22.621	0.096514	22.621	22.573	22.67	0	1167	37	0.91857195	0.022035897	0.91857195	372.26205	0	8.930298						96	5	3	NaN	NaN	NaN	0.53206	1	15449	15449		8.2903	1.8604	1	17402	+		9459	13310	5482	5595	7472	7472					0.025371380885189865
HQGCYHFLFE	10	Unmodified	_HQGCYHFLFE_					0	0	0			REV__ENST00000495294.1_1_X:2826020-2847341:-|nuORF	REV__ENST00000495294.1_1_X:2826020-2847341:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.7794902521999	2	640.77949	1279.54443	1.6906	0.0010833	-4.3339	-0.0027771	-2.6433	-0.0016938	640.7768972773663	20.285	0.096188	20.285	20.261	20.357	0	1158	46	0.92408	0.027531445	0.92408	374.11526	0	11.146179						151	5	4	NaN	NaN	NaN	0.76548	1	18404	18404		3.5698	0.78459	1	15496	+		9460	8375	5483	5596	7473	7473					-0.08416286548299468
HQGLHQKAFDF	11	Unmodified	_HQGLHQKAFDF_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.3307358705	2	664.330736	1326.64692	1.5877	0.0010547	5.3962	0.0035848	6.9838	0.0046396	664.3339410967787	21.464	0.096478	21.464	21.44	21.537	0	1125	43	0.9442611	0.025666952	0.9442611	382.14056	0	10.38736						87	5	3	NaN	NaN	NaN	0.7072	1	19208	19208		6.9844	0.55443	1	7288.6	+		9461	9351	5484	5597	7474	7474					-0.0033387748517270666
HQHCRALLE	9	Unmodified	_HQHCRALLE_					0	0	0			REV__ENSG00000170485|ENST00000335681|NPAS2	REV__ENSG00000170485|ENST00000335681|NPAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7798246032002	2	553.779825	1105.5451	1.6556	0.00091683	-5.9374	-0.003288	-4.2818	-0.0023712	553.7781057494307	23.152	0.12055	23.152	23.079	23.2	0	1230	76	0.8799654	0.046014845	0.8799654	356.85352	0	18.660461						155	6	2	NaN	NaN	NaN	0.66529	1	13080	13080		2.1763	0.2517	1	15796	+		9462	10587	5485	5598	7475	7475					-0.003454471085433397
HQKNTVLDLK	10	Unmodified	_HQKNTVLDLK_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3433119295	2	598.343312	1194.67207	1.0714	0.00064104	-8.3057	-0.0049696	-7.2343	-0.0043286	598.3383827755131	21.103	0.048151	21.103	21.079	21.127	0	1155	34	0.92591566	0.020189762	0.92591566	375.1427	0	8.180054						77	3	3	NaN	NaN	NaN	0.5544	1	16302	16302		17.198	6.2333	1	9206.8	+		9463	10656	5486	5599	7476	7476					0.08252177317422138
HQKNTVLDLK	10	Unmodified	_HQKNTVLDLK_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3433119295	2	598.343312	1194.67207	1.0827	0.00064781	-5.9724	-0.0035736	-4.8897	-0.0029257	598.3397212821804	21.2	0.14452	21.2	21.175	21.32	0	1155	40	0.92591566	0.023860574	0.92591566	375.14267	0	9.667358						136	7	3	NaN	NaN	NaN	0.31689	1	16307	16307		27.046	9.0768	1	13116	+		9464	10656	5486	5599	7477	7477					0.08252177317422138
HQKNTVLDLK	10	Unmodified	_HQKNTVLDLK_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3433119295	2	598.343312	1194.67207	0.94886	0.00056774	-7.4102	-0.0044338	-6.4613	-0.0038661	598.3394123350904	21.344	0.26461	21.33	21.21	21.475	-0.014006	1155	40	0.92591566	0.023863196	0.9243962	375.1427	0	9.6683655						256	12	4	NaN	NaN	NaN	0.23201	1	15669	15669		32.778	4.2827	1	27485	+		9465	10656	5486	5599	7478	7478					0.08252177317422138
HQKNTVLDLK	10	Unmodified						0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.343312	1194.67207	1.0827	0.00064781	-5.9724	-0.0035736	-4.8897	-0.0029257	598.3397212821804	21.2	0.14452	21.2	21.175	21.32	0	1155	40	0.92591566	0.023860574	0.92591566	375.14267		9.667358	-0.065301	0.0010198	0.00075972	NaN	32.778	136	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13116	+		9466	10656	5486	5599							0.08252177317422138
HQKNTVLDLK	10	Unmodified						0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.343312	1194.67207	0.94886	0.00056774	-7.4102	-0.0044338	-6.4613	-0.0038661	598.3394123350904	21.344	0.26461	21.33	21.21	21.475	-0.014006	1155	40	0.92591566	0.023863196	0.9243962	375.1427		9.6683655	0.065301	-0.00070073	-0.00075972	NaN	32.778	256	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27485	+		9467	10656	5486	5599							0.08252177317422138
HQLPPDPEK	9	Unmodified	_HQLPPDPEK_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5421852089999	1	1060.54219	1059.53491	1.9914	0.0021119	-1.2334	-0.0013081	0.75797	0.00080386	1060.5409635674791	22.405	0.19271	22.405	22.356	22.549	0	183	52	1.510409	0.030139327	1.510409	306.42648	0	6.1145325						181	9	2	NaN	NaN	NaN	0.25448	1	11069	11069		21.835	5.2508	1	22096			9468	4898	5487	5600	7479	7479					0.007522684378500344
HQLQEDYHRLL	11	Unmodified	_HQLQEDYHRLL_					0	0	0		nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;ENST00000223791.7_2_9:117130488-117139135:-|nuORF	nc|ENSG00000106948|Q7Z591-3|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.5845134898333	3	484.584513	1450.73171	1.8222	0.00088302	1.6445	0.00079691	3.4668	0.0016799	484.58579837304734	15.63	0.072057	15.63	15.582	15.654	0	1380	31	0.7876915	0.018502772	0.7876915	477.7408	0	11.222076						54	4	2	NaN	NaN	NaN	0.70989	1	20387	20387		6.8076	0	1	8749.6			9469	1622	5488	5601	7480	7480					0.024374482607981918
HQLQLNPNIWV	11	Unmodified	_HQLQLNPNIWV_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.58233284286666	3	454.582333	1360.72517	1.2618	0.00057357	5.1527	0.0023423	6.4145	0.0029159	454.5852526349191	16.686	0.072006	16.686	16.662	16.734	0	1449	31	0.74507743	0.018550932	0.74507743	452.17688	0	11.258331						48	4	2	NaN	NaN	NaN	0.7686	1	19694	19694		2.239	1.01	1	5520.6			9470	5579	5489	5602	7481	7481					0.059235551000710984
HQNIHPENQE	10	Unmodified	_HQNIHPENQE_					0	0	0		nc|ENSG00000120925|Q96K19-5|RNF170;nc|ENSG00000120925|Q96K19-3|RNF170;nc|ENSG00000120925|Q96K19-2|RNF170;ENSG00000120925|ENST00000527424|RNF170;ENST00000528318.5_1_8:42716773-42751856:-|nuORF	nc|ENSG00000120925|Q96K19-5|RNF170	nc|ENSG00000120925|Q96K19-5|RNF170	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.2839826431501	2	623.283983	1244.55341	1.293	0.00080591	0.61924	0.00038596	1.9123	0.0011919	623.2842064244813	23.778	0.07234	23.765	23.741	23.813	-0.013048	1149	61	0.92958635	0.03672248	0.9280669	376.45746	0	14.871643						80	4	2	NaN	NaN	NaN	0.6772	1	16880	16880		9.6116	4.4228	1	9556.9			9471	2280	5490	5603	7482	7482					-0.059082216582282854
HQQKMEIYQ	9	Unmodified	_HQQKMEIYQ_					0	0	0			REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7925976274502	2	602.792598	1203.57064	1.1314	0.00068202	2.9113	0.0017549	4.0427	0.0024369	602.7948261469767	24.647	0.14473	24.647	24.598	24.743	0	1170	64	0.91673553	0.03856486	0.91673553	371.39188	0	15.623566						215	7	3	NaN	NaN	NaN	0.53317	1	16576	16576		8.2448	0.70444	1	22782	+		9472	9149	5491	5604	7483	7483					-0.023000173767741217
HQQKMEIYQ	9	Unmodified						0	0	0			REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.792598	1203.57064	1.1314	0.00068202	2.9113	0.0017549	4.0427	0.0024369	602.7948261469767	24.647	0.14473	24.647	24.598	24.743	0	1170	64	0.91673553	0.03856486	0.91673553	371.39188		15.623566	-0.0057939	-0.00022957	0.001678	NaN	8.2448	215	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22782	+		9473	9149	5491	5604							-0.023000173767741217
HQQKMEIYQ	9	Unmodified						0	0	0			REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	REV__MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.792598	1203.57064	0.85448	0.00051508	3.3134	0.0019973	4.1679	0.0025124	603.2965025198274	24.671	0.12057	24.658	24.61	24.731	-0.012392	1173	70	0.91489893	0.0422377	0.9133795	370.64783		17.111542	0.0057939	0.00025524	-0.001678	NaN	8.2448	199	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14973	+		9474	9149	5491	5604							-0.023000173767741217
HQRAELSY	8	Unmodified	_HQRAELSY_					0	0	0		ENSG00000138650|ENST00000264360|PCDH10	ENSG00000138650|ENST00000264360|PCDH10	ENSG00000138650|ENST00000264360|PCDH10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.251422917	2	502.251423	1002.48829	1.064	0.00053437	-5.8338	-0.00293	-4.7698	-0.0023956	502.248936962678	14.548	0.2396	14.537	14.513	14.752	-0.011218	1338	64	0.81357855	0.038790643	0.8120591	330.34882	0	15.750702						221	11	2	NaN	NaN	NaN	0.67593	1	8513	8513		20.555	2.5858	1	38579			9475	3174	5492	5605	7484	7484					-0.012851713934310283
HQSYVGLCPP	10	Unmodified	_HQSYVGLCPP_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7633088717502	2	550.763309	1099.51206	0.95929	0.00052834	-2.324	-0.00128	-1.3647	-0.00075164	550.7617940335917	32.152	0.048256	32.152	32.128	32.177	0	1257	49	0.86339295	0.02948612	0.86339295	350.1565	0	11.958374						63	3	2	NaN	NaN	NaN	0.77318	1	12820	12820		2.1763	0	1	5174.7			9476	3725	5493	5606	7485	7485					-0.03371073951257131
HQTGVLIFDG	10	Unmodified	_HQTGVLIFDG_					0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7825558699001	2	543.782556	1085.55056	1.9954	0.0010851	0.73757	0.00040108	2.733	0.0014861	543.7820709860152	19.876	0.21636	19.876	19.78	19.997	0	1248	73	0.8689189	0.04419577	0.8689189	352.45367	0	17.926819						482	10	5	NaN	NaN	NaN	0.20271	1	12202	12202		35.296	8.0003	1	151880	+		9477	8845	5494	5607	7486	7486					0.01120554954900399
HQTGVLIFDG	10	Unmodified						0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.782556	1085.55056	1.9954	0.0010851	0.73757	0.00040108	2.733	0.0014861	543.7820709860152	19.876	0.21636	19.876	19.78	19.997	0	1248	73	0.8689189	0.04419577	0.8689189	352.45367		17.926819	0.0074165	0.0017027	0.0016806	NaN	35.296	482	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151880	+		9478	8845	5494	5607							0.01120554954900399
HQTGVLIFDG	10	Unmodified						0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.782556	1085.55056	1.7299	0.00094068	-1.2618	-0.00068615	0.46808	0.00025454	543.781920093794	19.876	0.16846	19.861	19.813	19.982	-0.014141	1251	73	0.8670771	0.04420048	0.8655577	351.7066		17.928741	-0.0074165	-0.00047177	-0.0016806	NaN	35.296	434	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135130	+		9479	8845	5494	5607							0.01120554954900399
HQTSASAG	8	Unmodified	_HQTSASAG_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.3427571198	1	758.342757	757.335481	1.7937	0.0013602	6.9917	0.0053021	8.7853	0.0066623	758.3477033093462	19.779	0.12033	19.765	19.741	19.861	-0.014141	558	64	1.2873057	0.03774953	1.2857863	262.49973	0	7.697693						102	6	2	NaN	NaN	NaN	0.78967	1	4105	4105		10.605	3.0646	1	9309.4	+		9480	10070	5495	5608	7487	7487					-0.05289366790043459
HQTSASAG	8	Unmodified						0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	758.342757	757.335481	1.8293	0.0013873	5.3719	0.0040737	7.2012	0.005461	758.3469798918264	19.78	0.12011	19.78	19.732	19.852	0	561	73	1.2855089	0.043135524	1.2855089	262.13336		8.795959	0.0075142	-0.00048344	-0.0001387	NaN	10.605	182	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21098	+		9481	10070	5495	5608							-0.05289366790043459
HQTSASAG	8	Unmodified						0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	758.342757	757.335481	1.7937	0.0013602	6.9917	0.0053021	8.7853	0.0066623	758.3477033093462	19.779	0.12033	19.765	19.741	19.861	-0.014141	558	64	1.2873057	0.03774953	1.2857863	262.49973		7.697693	-0.0075142	0.00074491	0.0001387	NaN	10.605	102	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9309.4	+		9482	10070	5495	5608							-0.05289366790043459
HQVPTIKV	8	Unmodified	_HQVPTIKV_					0	0	0		ENSG00000120907|ENST00000380573|ADRA1A	ENSG00000120907|ENST00000380573|ADRA1A	ENSG00000120907|ENST00000380573|ADRA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.5516276833001	1	921.551628	920.544351	1.9878	0.0018319	-2.5024	-0.0023061	-0.51463	-0.00047426	921.5507377750868	54.14	0.07193	54.14	54.092	54.164	0	405	37	1.3786905	0.021446228	1.3786905	280.24615	0	4.359375						56	4	2	NaN	NaN	NaN	0.84455	1	6425	6425		2.7852	0	1	2809.3			9483	2279	5496	5609	7488	7488					0.08090081514046688
HRCRVLFML	9	Unmodified	_HRCRVLFML_					0	0	0			REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8204382076501	2	587.820438	1173.62632	1.2567	0.00073872	-5.4924	-0.0032285	-4.2357	-0.0024898	587.8171633868735	30.269	0.21714	30.263	30.19	30.407	-0.0064106	1146	100	0.93142134	0.060595453	0.9299019	377.45062	0	24.555786						717	10	5	NaN	NaN	NaN	0.17818	1	15057	15057		26.732	1.7706	1	230330	+		9484	12198	5497	5610	7489	7489					0.046455373298385894
HREECTCDLL	10	Unmodified	_HREECTCDLL_					0	0	0		GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.8462405305	3	406.846241	1217.51689	1.3149	0.00053498	4.563	0.0018564	5.8779	0.0023914	406.8475260280727	21.97	0.096277	21.956	21.932	22.028	-0.013895	1509	40	0.70793515	0.024172664	0.7064157	430.1428	0	14.687317						72	5	2	NaN	NaN	NaN	0.72631	1	16246	16246		7.6826	2.3979	1	7105.9			9485	7806	5498	5611	7490	7490					-0.08316557870807628
HRHFFHRLYKR	11	Unmodified	_HRHFFHRLYKR_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.9638820421334	3	532.963882	1595.86982	2.0171	0.0010751	-2.7804	-0.0014818	-0.76325	-0.00040679	532.9622166131609	21.73	0.16849	21.73	21.705	21.874	0	1341	40	0.8117308	0.024023652	0.8117308	491.89822	0	14.558014						244	8	4	NaN	NaN	NaN	0.72681	1	20745	20745		5.6972	4.5951	1	42205	+		9486	10898	5499	5612	7491	7491					0.09571661090581074
HRHFFHRLYKR	11	Unmodified						0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	532.963882	1595.86982	2.0171	0.0010751	-2.7804	-0.0014818	-0.76325	-0.00040679	532.9622166131609	21.73	0.16849	21.73	21.705	21.874	0	1341	40	0.8117308	0.024023652	0.8117308	491.89822		14.558014	-0.13746	-0.00085008	0.0016837	NaN	5.6972	244	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42205	+		9487	10898	5499	5612							0.09571661090581074
HRHFFHRLYKR	11	Unmodified						0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	532.963882	1595.86982	0.77034	0.00041056	-1.2781	-0.00068118	-0.50775	-0.00027061	533.2976703043113	22.018	0.31328	22.004	21.908	22.221	-0.013895	1344	37	0.8098828	0.022174478	0.8083634	490.77835		13.437439	0.13746	0.0015519	-0.0016837	NaN	5.6972	246	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30792	+		9488	10898	5499	5612							0.09571661090581074
HRIIKGFM	8	Unmodified	_HRIIKGFM_					0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2892968672501	2	501.289297	1000.56404	1.2003	0.00060168	1.3818	0.00069268	2.5821	0.0012944	501.2899260719179	29.762	0.28951	29.755	29.659	29.948	-0.0070667	1221	178	0.885486	0.10847795	0.88396657	359.55576	0	44.047974						787	13	2	NaN	NaN	NaN	0.84876	1	8457	8457		0.39566	0	1	172910			9489	1923	5500	5613	7492	7492					0.06378134253156986
HRIIKGFM	8	Unmodified	_HRIIKGFM_					0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2892968672501	2	501.289297	1000.56404	0.89769	0.00045	2.4831	0.0012448	3.3808	0.0016948	501.2906227684044	30.004	0.072428	29.997	29.997	30.07	-0.0064106	1224	85	0.883646	0.05152273	0.88212657	358.8086	0	20.92102						128	4	2	NaN	NaN	NaN	0.84876	1	8458	8458		0.39566	0	1	14124			9490	1923	5500	5613	7493	7493					0.06378134253156986
HRIIKGFM	8	Unmodified						0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.289297	1000.56404	1.6502	0.00082725	2.0515	0.0010284	3.7017	0.0018556	501.29023285722394	30.294	0.16891	30.294	30.222	30.391	0	1221	55	0.885486	0.033128858	0.885486	359.55576		13.452118	0.14848	-0.00029691	0.0016797	NaN	0.39566	108	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7204.6			9491	1923	5500	5613							0.06378134253156986
HRKACAMRM	9	Unmodified	_HRKACAMRM_					0	0	0			REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5383193549999	1	1103.53832	1102.53104	1.047	0.0011554	5.4112	0.0059715	6.4582	0.0071269	1103.5437789172204	32.127	0.14473	32.123	32.099	32.244	-0.0037575	63	64	1.5811787	0.037085176	1.5796592	320.62308	0	7.5199585						150	7	2	NaN	NaN	NaN	0.61413	1	12604	12604		4.9097	0.94122	1	12356	+		9492	12070	5501	5614	7494	7494					-0.016121391328624668
HRKACAMRM	9	Unmodified						0	0	0			REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1103.53832	1102.53104	1.2474	0.0013766	3.0329	0.003347	4.2804	0.0047236	1103.541012582113	32.128	0.096512	32.128	32.128	32.225	0	66	55	1.579413	0.03178227	1.579413	320.26508		6.444641	0.0024285	-0.00077099	-0.00012308	NaN	4.9097	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9296.2	+		9493	12070	5501	5614							-0.016121391328624668
HRKACAMRM	9	Unmodified						0	0	0			REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	REV__ENST00000412373.5_1_3:188817959-188844898:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1103.53832	1102.53104	1.047	0.0011554	5.4112	0.0059715	6.4582	0.0071269	1103.5437789172204	32.127	0.14473	32.123	32.099	32.244	-0.0037575	63	64	1.5811787	0.037085176	1.5796592	320.62308		7.5199585	-0.0024285	0.0018535	0.00012308	NaN	4.9097	150	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12356	+		9494	12070	5501	5614							-0.016121391328624668
HRLDEELI	8	Unmodified	_HRLDEELI_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.542185209	1	1024.54219	1023.53491	1.8179	0.0018626	-10.554	-0.010813	-8.7357	-0.0089501	1024.5307461959442	20.068	0.12034	20.054	20.03	20.15	-0.014141	198	49	1.5015416	0.028379917	1.5000222	304.76523	0	5.7602234						104	6	2	NaN	NaN	NaN	0.73961	1	9318	9318		16.584	1.4088	1	8477.1			9495	815	5502	5615	7495	7495					0.024082684378640806
HRLKRMWCC	9	Unmodified	_HRLKRMWCC_					0	0	0			REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8017225257502	2	616.801723	1231.58889	1.104	0.00068098	-0.73479	-0.00045322	0.36926	0.00022776	616.8010872997974	24.188	0.048227	24.175	24.151	24.199	-0.012749	1017	79	1.010141	0.04748267	1.0086216	409.12717	0	19.231415						103	3	2	NaN	NaN	NaN	0.6907	1	16588	16588		0	0	1	7530.4	+		9496	12533	5503	5616	7496	7496					-0.017638772074178632
HRLKRMWCC	9	Unmodified						0	0	0			REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.801723	1231.58889	0.87674	0.00054078	-1.9606	-0.0012093	-1.0838	-0.0006685	616.8005634129429	24.164	0.072433	24.164	24.14	24.213	0	1014	85	1.0119673	0.05112964	1.0119673	409.86688		20.708557	-0.0055604	-0.00075941	0.0016729	NaN	0	147	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8475.7	+		9497	12533	5503	5616							-0.017638772074178632
HRLKRMWCC	9	Unmodified						0	0	0			REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	REV__ENST00000504840.1_1_4:85292851-85301105:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.801723	1231.58889	1.104	0.00068098	-0.73479	-0.00045322	0.36926	0.00022776	616.8010872997974	24.188	0.048227	24.175	24.151	24.199	-0.012749	1017	79	1.010141	0.04748267	1.0086216	409.12717		19.231415	0.0055604	0.00075271	-0.0016729	NaN	0	103	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7530.4	+		9498	12533	5503	5616							-0.017638772074178632
HRLRQRGLW	9	Unmodified	_HRLRQRGLW_					0	0	0		ENST00000528797.5_1_11:57413095-57413371:-|nuORF	ENST00000528797.5_1_11:57413095-57413371:-|nuORF	ENST00000528797.5_1_11:57413095-57413371:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.3574223577501	2	611.357422	1220.70029	0.26093	0.00015952	-2.4199	-0.0014794	-2.1589	-0.0013199	611.3553980886761	32.079	0.14482	32.075	31.954	32.099	-0.0037613	1065	61	0.9808926	0.03658414	0.97937316	397.32028	0	14.818787						232	7	3	NaN	NaN	NaN	0.68748	1	16321	16321		0.27539	0	1	40977			9499	7439	5504	5617	7497	7497					0.09876964808040611
HRNFHKYLY	9	Unmodified	_HRNFHKYLY_					0	0	0			REV__ENSG00000111639|ENST00000229238|MRPL51	REV__ENSG00000111639|ENST00000229238|MRPL51	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.5561180923667	3	426.556118	1276.64652	1.83	0.00078061	6.1945	0.0026423	8.0246	0.0034229	426.5587047208004	23.079	0.07217	23.079	23.031	23.103	0	1377	31	0.7895419	0.018502772	0.7895419	479.47845	0	11.236511						55	4	2	NaN	NaN	NaN	0.67818	1	18360	18360		0.44583	0.19807	1	5166.4	+		9500	9100	5505	5618	7498	7498					0.019267475856622696
HRNFHKYLY	9	Unmodified						0	0	0			REV__ENSG00000111639|ENST00000229238|MRPL51	REV__ENSG00000111639|ENST00000229238|MRPL51	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	426.556118	1276.64652	1.83	0.00078061	6.1945	0.0026423	8.0246	0.0034229	426.5587047208004	23.079	0.07217	23.079	23.031	23.103	0	1377	31	0.7895419	0.018502772	0.7895419	479.47845		11.236511	-0.0292	-0.0007636	0.00075972	NaN	0.44583	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5166.4	+		9501	9100	5505	5618							0.019267475856622696
HRPCLQVIE	9	Unmodified	_HRPCLQVIE_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7924006622001	2	547.792401	1093.57025	1.0828	0.00059313	-7.3239	-0.004012	-6.2412	-0.0034189	548.2896763666413	29.376	0.19305	29.368	29.32	29.513	-0.0077229	1209	58	0.892844	0.034944832	0.8913246	362.125	0	14.173126						327	9	4	NaN	NaN	NaN	0.61852	1	12237	12237		4.7291	1.5175	1	29322			9502	1424	5506	5619	7499	7499					0.02720607694004684
HRPCLQVIE	9	Unmodified						0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.792401	1093.57025	1.213	0.00066447	-9.3665	-0.0051309	-8.1535	-0.0044664	547.7874632773537	29.353	0.26547	29.353	29.28	29.546	0	1206	73	0.894683	0.044152796	0.894683	362.87088		17.907715	-0.0078183	-0.00096881	0.0016792	NaN	4.7291	336	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41670			9503	1424	5506	5619							0.02720607694004684
HRPGGGAG	8	Unmodified	_HRPGGGAG_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3535965776001	1	708.353597	707.34632	1.4259	0.00101	3.6139	0.0025599	5.0398	0.0035699	708.3560164900998	25.322	0.16889	25.322	25.298	25.467	0	663	43	1.2243022	0.025248528	1.2243022	249.96606	0	5.155014						108	8	2	NaN	NaN	NaN	0.84692	1	3353	3353		1.4396	0	1	9564.9	+		9504	12599	5507	5620	7500	7500					-0.019059196250964305
HRPGGGAG	8	Unmodified						0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.353597	707.34632	1.4259	0.00101	3.6139	0.0025599	5.0398	0.0035699	708.3560164900998	25.322	0.16889	25.322	25.298	25.467	0	663	43	1.2243022	0.025248528	1.2243022	249.96606		5.155014	-0.0059139	-0.00011501	0.00075972	NaN	1.4396	108	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9564.9	+		9505	12599	5507	5620							-0.019059196250964305
HRPGGGAG	8	Unmodified						0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.353597	707.34632	1.612	0.0011419	4.0783	0.0028889	5.6903	0.0040307	708.3573158077912	25.346	0.12065	25.334	25.286	25.407	-0.012011	663	52	1.2243022	0.030667186	1.2227827	249.96606		6.2613373	0.0059139	0.00021393	-0.00075972	NaN	1.4396	114	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9430.5	+		9506	12599	5507	5620							-0.019059196250964305
HRRGNPWPM	9	Unmodified	_HRRGNPWPM_					0	0	0			REV__ENSG00000229637|ENST00000422730|PRAC2	REV__ENSG00000229637|ENST00000422730|PRAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7879839863001	2	575.787984	1149.56142	1.3998	0.00080597	-0.25943	-0.00014938	1.1403	0.00065659	576.2884599261572	27.302	0.096531	27.302	27.277	27.374	0	1224	61	0.883646	0.03678602	0.883646	358.1771	0	14.910828						132	5	2	NaN	NaN	NaN	0.53206	1	14781	14781		8.2903	0.012744	1	16233	+		9507	11316	5508	5621	7501	7501					-0.007383211517890231
HRRVMDWHHE	10	Unmodified	_HRRVMDWHHE_					0	0	0			REV__nc|ENSG849|O42043|ERVK-18_env	REV__nc|ENSG849|O42043|ERVK-18_env	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.22303311120004	3	468.223033	1401.64727	1.5158	0.00070972	2.7234	0.0012751	4.2392	0.0019849	468.22408626307316	25.539	0.072304	25.539	25.515	25.588	0	1350	37	0.80618626	0.02218169	0.80618626	489.1195	0	13.457825						93	4	3	NaN	NaN	NaN	0.77421	1	20073	20073		0.71611	0	1	8642.6	+		9508	13262	5509	5622	7502	7502					-0.03748781036938453
HSAAAAAA	8	Unmodified	_HSAAAAAA_					0	0	0		nc|ENSG00000170370|Q04743-2|EMX2;ENSG00000170370|ENST00000553456|EMX2;nc|ENSG00000006377|P56179-2|DLX6;ENSG00000006377|ENST00000518156|DLX6;nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000043355|ENST00000376335|ZIC2;ENSG00000166188|ENST00000299237|ZNF319;ENSG00000141448|ENST00000269216|GATA6	nc|ENSG00000170370|Q04743-2|EMX2	nc|ENSG00000170370|Q04743-2|EMX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.1693703092999	2	335.16937	668.324188	0.98002	0.00032847	-7.9927	-0.0026789	-7.0127	-0.0023504	335.16675228606687	43.799	0.071838	43.81	43.738	43.81	0.011429	1536	34	0.69119483	0.020469368	0.6896754	282.54718	0	8.367462						54	4	2	NaN	NaN	NaN	0.84727	1	2461	2461		1.2418	0.91196	1	6045.8			9509	343	5510	5623	7503	7503					-0.02324144093540781
HSAAAPGG	8	Unmodified	_HSAAAPGG_					0	0	0		ENST00000511689.5_1_5:134724614-134734957:-|nuORF	ENST00000511689.5_1_5:134724614-134734957:-|nuORF	ENST00000511689.5_1_5:134724614-134734957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3158140878	1	667.315814	666.308538	1.8633	0.0012434	-5.5585	-0.0037093	-3.6952	-0.0024659	667.3120916545821	19.588	0.28804	19.588	19.468	19.756	0	789	64	1.1483859	0.038045645	1.1483859	234.74037	0	7.776886						324	13	3	NaN	NaN	NaN	0.84651	1	2482	2482		1.6704	0	1	59820			9510	7358	5511	5624	7504	7504					-0.03796430610577772
HSAGATAG	8	Unmodified	_HSAGATAG_					0	0	0			REV__nc|ENSG00000112419|O75167|PHACTR2	REV__nc|ENSG00000112419|O75167|PHACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.15900258824996	2	336.159003	670.303452	3.0127	0.0010127	5.6282	0.001892	8.6409	0.0029047	336.16055419690997	35.022	0.024132	35.022	35.022	35.046	-4.5776E-05	1485	22	0.72280174	0.013001919	0.7212823	295.44995	0	5.3146057						27	2	2	NaN	NaN	NaN	0.84727	1	2517	2517		1.2418	0.84618	1	1571.5	+		9511	9121	5512	5625	7505	7505					-0.0448873447319329
HSAGGLLV	8	Unmodified	_HSAGGLLV_					0	0	0			REV__ENSG00000125378|ENST00000245451|BMP4	REV__ENSG00000125378|ENST00000245451|BMP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.2163205019	2	377.216321	752.418088	1.5219	0.00057408	-3.765	-0.0014202	-2.2431	-0.00084615	377.21526870339	21.513	0.26509	21.513	21.392	21.657	0	1419	40	0.76361835	0.024091423	0.76361835	311.45386	0	9.82608						203	12	3	NaN	NaN	NaN	0.84887	1	4108	4108		0.32989	0	1	22533	+		9512	9393	5513	5626	7506	7506					0.031975750087553934
HSAGGLLV	8	Unmodified						0	0	0			REV__ENSG00000125378|ENST00000245451|BMP4	REV__ENSG00000125378|ENST00000245451|BMP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	377.216321	752.418088	1.5219	0.00057408	-3.765	-0.0014202	-2.2431	-0.00084615	377.21526870339	21.513	0.26509	21.513	21.392	21.657	0	1419	40	0.76361835	0.024091423	0.76361835	311.45386		9.82608	0.091229	0.00069241	0.007248	NaN	0.32989	203	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22533	+		9513	9393	5513	5626							0.031975750087553934
HSAGGLLV	8	Unmodified						0	0	0			REV__ENSG00000125378|ENST00000245451|BMP4	REV__ENSG00000125378|ENST00000245451|BMP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	377.216321	752.418088	2.432	0.00091739	-6.2942	-0.0023743	-3.8622	-0.0014569	377.213732313202	21.344	0.048065	21.33	21.33	21.378	-0.014006	1440	34	0.7506418	0.020398319	0.7491224	306.1612		8.319794	-0.091229	-0.0012157	-0.007248	NaN	0.32989	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2632	+		9514	9393	5513	5626							0.031975750087553934
HSAGLLRGA	9	Unmodified	_HSAGLLRGA_					0	0	0			REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.25122595175003	2	441.251226	880.487899	1.1756	0.00051875	-1.2035	-0.00053103	-0.02781	-1.2271E-05	441.2506541199821	12.004	0.11997	12.004	11.932	12.052	0	1557	37	0.67816323	0.022350848	0.67816323	275.88013	0	9.092407						92	6	2	NaN	NaN	NaN	0.089764	1	5811	5811		37.302	5.7413	1	7821.3	+		9515	12106	5514	5627	7507	7507					0.04287453677375197
HSAGLLRGA	9	Unmodified						0	0	0			REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	REV__ENST00000420329.6_1_15:91185432-91185957:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	441.251226	880.487899	1.1756	0.00051875	-1.2035	-0.00053103	-0.02781	-1.2271E-05	441.2506541199821	12.004	0.11997	12.004	11.932	12.052	0	1557	37	0.67816323	0.022350848	0.67816323	275.88013		9.092407	0.0031429	0.00076162	0.00075972	NaN	37.302	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7821.3	+		9516	12106	5514	5627							0.04287453677375197
HSAIFGAGG	9	Unmodified	_HSAIFGAGG_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.3998780682001	1	816.399878	815.392602	1.284	0.0010483	-5.4029	-0.0044109	-4.1189	-0.0033626	816.3952968035893	31.211	0.072392	31.211	31.187	31.259	0	456	43	1.348284	0.025060654	1.348284	274.58566	0	5.1037292						69	4	2	NaN	NaN	NaN	0.42773	1	4959	4959		12.588	4.2976	1	4582	+		9517	8704	5515	5628	7508	7508					-0.02247899513668017
HSEEETMII	9	Unmodified	_HSEEETMII_					0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.75006411075	2	544.750064	1087.48558	1.2245	0.00066704	-1.8199	-0.00099141	-0.59546	-0.00032438	544.7494296011137	28.845	0.14481	28.837	28.765	28.909	-0.0083504	1248	58	0.8689189	0.034993947	0.86739945	352.44583	0	14.194031						366	7	5	NaN	NaN	NaN	0.27442	1	11953	11953		20.555	3.9713	1	67580	+		9518	8803	5516	5629	7509	7509					-0.05466807633251847
HSEEETMII	9	Unmodified						0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.750064	1087.48558	1.4982	0.00081612	-1.9861	-0.0010819	-0.48794	-0.0002658	544.7496240865213	28.822	0.24135	28.822	28.701	28.943	0	1248	79	0.8689189	0.047873557	0.8689189	352.44583		19.418182	-0.0075112	-0.00011538	0.00075972	NaN	20.555	429	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75685	+		9519	8803	5516	5629							-0.05466807633251847
HSEEETMII	9	Unmodified						0	0	0			REV__ENSG00000100314|ENST00000216144|CABP7	REV__ENSG00000100314|ENST00000216144|CABP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.750064	1087.48558	1.2245	0.00066704	-1.8199	-0.00099141	-0.59546	-0.00032438	544.7494296011137	28.845	0.14481	28.837	28.765	28.909	-0.0083504	1248	58	0.8689189	0.034993947	0.86739945	352.44583		14.194031	0.0075112	6.5642E-05	-0.00075972	NaN	20.555	366	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67580	+		9520	8803	5516	5629							-0.05466807633251847
HSELYSLLI	9	Unmodified	_HSELYSLLI_					0	0	0		RRM2B|p.M137L|1|0.17|ENSG00000048392|chr8:102224931-102224931|T/A|missense_variant	RRM2B|p.M137L|1|0.17|ENSG00000048392|chr8:102224931-102224931|T/A|missense_variant	RRM2B|p.M137L|1|0.17|ENSG00000048392|chr8:102224931-102224931|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7951319289001	2	537.795132	1073.57571	1.2887	0.00069307	-1.028	-0.00055285	0.26072	0.00014021	537.7949675752758	24.019	0.12062	24.006	23.982	24.103	-0.012747	1239	43	0.87444305	0.025775313	0.8729236	354.744	0	10.456482						128	6	4	NaN	NaN	NaN	0.36492	1	11419	11419		15.175	0	1	15713			9521	13667	5517	5630	7510	7510					0.0418660975747116
HSFANIHP	8	Unmodified	_HSFANIHP_					0	0	0		nc|ENSG00000113749|P25021-2|HRH2	nc|ENSG00000113749|P25021-2|HRH2	nc|ENSG00000113749|P25021-2|HRH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.7301263689	2	461.730126	921.4457	1.0438	0.00048193	-1.4708	-0.00067912	-0.42706	-0.00019719	461.72959867704594	15.582	0.09604	15.582	15.534	15.63	0	1488	37	0.7209441	0.022292614	0.7209441	293.08344	0	9.0625305						103	5	2	NaN	NaN	NaN	0.78264	1	6432	6432		11.548	0.94349	1	11979			9522	7928	5518	5631	7511	7511					-0.018165217310070148
HSGGAPLF	8	Unmodified	_HSGGAPLF_					0	0	0		ENST00000434813.3_1_2:201729060-201729207:-|nuORF	ENST00000434813.3_1_2:201729060-201729207:-|nuORF	ENST00000434813.3_1_2:201729060-201729207:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.3940644088	1	785.394064	784.386788	1.5272	0.0011994	-4.6779	-0.003674	-3.1507	-0.0024746	785.3900289336405	34.009	0.096577	34.008	33.984	34.08	-0.0012474	486	43	1.3303722	0.02508998	1.3288528	271.11517	0	5.113037						74	5	2	NaN	NaN	NaN	0.84207	1	4467	4467		3.5732	0	1	5254.4			9523	6989	5519	5632	7512	7512					-0.014029980253440044
HSGGEKGV	8	Unmodified	_HSGGEKGV_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.69320954635003	2	385.69321	769.371866	-0.30673	-0.0001183	5.7412	0.0022143	5.4344	0.002096	385.69637948350754	55.026	0.071976	55.025	55.001	55.073	-0.0006218	1494	40	0.7172283	0.024156868	0.71570885	292.4178	0	9.848907						95	4	3	NaN	NaN	NaN	0.84692	1	4273	4273		1.4396	0	1	10456	+		9524	11208	5520	5633	7513	7513					-0.02204489893324535
HSGGPSVI	8	Unmodified	_HSGGPSVI_					0	0	0			REV__ENST00000329608.10_2_1:110471647-110471734:+|nuORF	REV__ENST00000329608.10_2_1:110471647-110471734:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.3889790309	1	753.388979	752.381703	1.3054	0.00098348	-4.813	-0.003626	-3.5075	-0.0026425	753.3848428155458	27.349	0.096533	27.339	27.291	27.387	-0.010126	534	82	1.3016734	0.048493743	1.300154	265.46066	0	9.88974						164	5	3	NaN	NaN	NaN	0.69631	1	4025	4025		19.285	0	1	16119	+		9525	11744	5521	5634	7514	7514					-0.004393018879568444
HSGGPSVI	8	Unmodified						0	0	0			REV__ENST00000329608.10_2_1:110471647-110471734:+|nuORF	REV__ENST00000329608.10_2_1:110471647-110471734:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.388979	752.381703	1.3054	0.00098348	-4.813	-0.003626	-3.5075	-0.0026425	753.3848428155458	27.349	0.096533	27.339	27.291	27.387	-0.010126	534	82	1.3016734	0.048493743	1.300154	265.46066		9.88974	0.0066356	-0.00045321	0.00013793	NaN	19.285	164	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16119	+		9526	11744	5521	5634							-0.004393018879568444
HSGLVRLFL	9	Unmodified	_HSGLVRLFL_					0	0	0			REV__ENST00000570752.5_1_16:2986644-2986740:+|nuORF	REV__ENST00000570752.5_1_16:2986644-2986740:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.6203759505	1	1041.62038	1040.6131	1.0638	0.0011081	7.9217	0.0082514	8.9855	0.0093595	1041.626896845688	47.275	0.047943	47.282	47.258	47.306	0.0074158	81	28	1.5705823	0.015900493	1.5690628	318.70865	0	3.2265625						36	3	2	NaN	NaN	NaN	0.61413	1	10042	10042		4.9097	1.3365	1	1846.8	+		9527	12825	5522	5635	7515	7515					0.09441745813751368
HSIDGRVVEPK	11	Unmodified	_HSIDGRVVEPK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.8946879736	3	412.894688	1235.66223	0.9831	0.00040592	-0.57688	-0.00023819	0.40622	0.00016773	412.8946938573017	12.702	0.12015	12.693	12.645	12.765	-0.00947	1419	28	0.76361835	0.016676903	0.7620989	463.89978	0	10.131226						90	6	2	NaN	NaN	NaN	0.22541	1	16693	16693		21.576	6.8608	1	9302.7			9528	2329	5523	5636	7516	7516					0.05382989312033715
HSIIPGFMC	9	Unmodified	_HSIIPGFMC_					0	0	0		ENST00000452411.1_1_7:98083525-98083918:-|nuORF	ENST00000452411.1_1_7:98083525-98083918:-|nuORF	ENST00000452411.1_1_7:98083525-98083918:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.73824821420004	2	502.738248	1003.46194	3.1497	0.0015835	-1.4895	-0.00074882	1.6602	0.00083466	502.7375198010143	19.274	0.024023	19.26	19.26	19.284	-0.014143	1311	34	0.83019954	0.020305753	0.8286801	337.09323	0	8.244904						28	2	2	NaN	NaN	NaN	0.65818	1	8537	8537		2.7852	0	1	1370.3			9529	7045	5524	5637	7517	7517					-0.03964899880770645
HSISLLNAE	9	Unmodified	_HSISLLNAE_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.26145628705	2	492.261456	982.50836	0.48341	0.00023796	5.6118	0.0027625	6.0952	0.0030005	492.2644481061813	20.935	0.19264	20.921	20.849	21.041	-0.014088	1317	61	0.8265074	0.03692949	0.82498795	335.69083	0	14.999115						146	9	2	NaN	NaN	NaN	0.51576	1	7799	7799		8.962	0	1	15871			9530	2263	5525	5638	7518	7518					0.016405795465288975
HSLDTVSPSDT	11	Unmodified	_HSLDTVSPSDT_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1158.5273230058	1	1158.52732	1157.52005	1.4752	0.0017091	-3.0702	-0.0035569	-1.595	-0.0018478	1158.5236459890923	31.934	0.096533	31.93	31.906	32.003	-0.0037613	90	49	1.5652816	0.028274894	1.5637622	317.21307	0	5.7300415						157	5	3	NaN	NaN	NaN	0.48069	1	14560	14560		19.164	1.3646	1	12578			9531	4823	5526	5639	7519	7519					-0.052412682207886974
HSLETVSSH	9	Unmodified	_HSLETVSSH_					0	0	0		nc|ENSG00000167483|Q86XR2|NIBAN3;nc|ENSG00000167483|Q86XR2-6|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4744995743001	1	996.4745	995.467223	1.8994	0.0018927	-3.5974	-0.0035847	-1.6979	-0.0016919	996.469333768315	29.667	0.09654	29.667	29.642	29.739	0	222	55	1.4873441	0.03196478	1.4873441	301.9967	0	6.490265						99	5	2	NaN	NaN	NaN	0.47587	1	8403	8403		10.605	0	1	7235.7			9532	7975	5527	5640	7520	7520					-0.03069181492946882
HSLETVSSH	9	Unmodified						0	0	0		nc|ENSG00000167483|Q86XR2|NIBAN3;nc|ENSG00000167483|Q86XR2-6|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.4745	995.467223	1.6947	0.0016888	-4.0995	-0.0040851	-2.4048	-0.0023963	996.4697307392195	29.666	0.07239	29.659	29.635	29.707	-0.0070648	216	34	1.4908947	0.019528747	1.4893752	302.71762		3.96521	-0.003949	-0.0002554	0.0010155	NaN	10.605	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5168.6			9533	7975	5527	5640							-0.03069181492946882
HSLPQEPVM	9	Unmodified	_HSLPQEPVM_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2578593531	2	519.257859	1036.50117	2.3968	0.0012445	-1.7358	-0.0009013	0.661	0.00034323	519.2569901649983	18.316	0.19194	18.316	18.268	18.46	0	1314	79	0.8283535	0.048013568	0.8283535	336.19864	0	19.486969						363	9	3	NaN	NaN	NaN	0.059222	1	10060	10060		42.995	25.196	1	66939			9534	4241	5528	5641	7521	7521					-0.01562476325557327
HSLPQEPVM	9	Unmodified	_HSLPQEPVM_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2578593531	2	519.257859	1036.50117	2.0881	0.0010843	-2.6504	-0.0013763	-0.56232	-0.00029199	519.2566855204572	18.338	0.14411	18.324	18.276	18.42	-0.01395	1314	79	0.8283535	0.048008323	0.8268341	336.19864	0	19.484833						398	7	4	NaN	NaN	NaN	0.032826	1	9850	9850		55.413	32.079	1	71261			9535	4241	5528	5641	7522	7522					-0.01562476325557327
HSLPQEPVM	9	Oxidation (M)	_HSLPQEPVM(Oxidation (M))_		HSLPQEPVM(1)		HSLPQEPVM(67)	0	0	1		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.25531666415	2	527.255317	1052.49608	1.7481	0.00092168	-5.1488	-0.0027148	-3.4008	-0.0017931	527.2532420874709	15.27	0.24026	15.27	15.246	15.486	0	1308	79	0.83204526	0.048003137	0.83204526	337.6297	0	19.478851						493	11	5	NaN	NaN	NaN	0.024221	1	10728	10728		66.656	37.058	1	128460			9536	4241	5528	5642	7523	7523		458			-0.028067801881888954
HSLPQEPVM	9	Oxidation (M)	_HSLPQEPVM(Oxidation (M))_		HSLPQEPVM(1)		HSLPQEPVM(67)	0	0	1		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.25531666415	2	527.255317	1052.49608	1.4172	0.00074721	-3.4749	-0.0018321	-2.0577	-0.0010849	527.2537384230034	15.268	0.23993	15.256	15.208	15.448	-0.012202	1308	85	0.83204526	0.0516845	0.8305259	337.6297	0	20.972687						443	11	4	NaN	NaN	NaN	0.024221	1	10505	10505		66.656	41.695	1	127810			9537	4241	5528	5642	7524	7524		458			-0.028067801881888954
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.78751224955	2	642.787512	1283.56047	1.9673	0.0012645	4.0478	0.0026019	6.0151	0.0038664	643.2926547750254	22.741	0.19286	22.728	22.631	22.824	-0.01354	1149	52	0.92958635	0.031195581	0.9280669	376.33188	0	12.629181						222	9	4	NaN	NaN	NaN	0.58731	1	17665	17665		14.854	0.42897	1	21274	+		9538	10390	5529	5643	7525	7525					-0.06996625102033249
HSNASQIMSYF	11	Unmodified						0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	642.787512	1283.56047	2.044	0.0013138	6.2001	0.0039854	8.2441	0.0052992	642.7904677305445	22.694	0.19296	22.694	22.621	22.814	0	1149	55	0.92958635	0.033025324	0.92958635	376.33188		13.369904	-0.017049	0.001884	0.00075972	NaN	14.854	241	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19463	+		9539	10390	5529	5643							-0.06996625102033249
HSNASQIMSYF	11	Unmodified						0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	642.787512	1283.56047	1.9673	0.0012645	4.0478	0.0026019	6.0151	0.0038664	643.2926547750254	22.741	0.19286	22.728	22.631	22.824	-0.01354	1149	52	0.92958635	0.031195581	0.9280669	376.33188		12.629181	0.017049	-0.00088296	-0.00075972	NaN	14.854	222	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21274	+		9540	10390	5529	5643							-0.06996625102033249
HSPSLSSF	8	Unmodified	_HSPSLSSF_					0	0	0			REV__ENST00000257527.8_2_5:156905874-156905961:-|nuORF	REV__ENST00000257527.8_2_5:156905874-156905961:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.20869243505	2	431.208692	860.402832	0.97515	0.00042049	-5.35	-0.002307	-4.3748	-0.0018865	431.20630776750755	26.915	0.12062	26.915	26.867	26.988	0	1365	40	0.7969414	0.024041891	0.7969414	324.3158	0	9.7838745						109	6	2	NaN	NaN	NaN	0.80692	1	5535	5535		8.2903	0	1	12857	+		9541	11529	5530	5644	7526	7526					-0.0329533657909451
HSPVVVGG	8	Unmodified	_HSPVVVGG_					0	0	0			REV__ENST00000509151.5_1_4:56376175-56412807:-|nuORF	REV__ENST00000509151.5_1_4:56376175-56412807:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.2084954698001	2	376.208495	750.402438	1.6089	0.00060528	0.31157	0.00011721	1.9205	0.0007225	376.20923472881947	28.508	0.096569	28.508	28.46	28.556	0	1416	43	0.76547134	0.025946021	0.76547134	312.22458	0	10.583008						59	5	2	NaN	NaN	NaN	0.84876	1	4068	4068		0.39566	0	1	5662.5	+		9542	12549	5531	5645	7527	7527					0.017252884917297706
HSQRALYS	8	Unmodified	_HSQRALYS_					0	0	0		nc|ENSG00000155719|Q7RTW8-4|OTOA;ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA	nc|ENSG00000155719|Q7RTW8-4|OTOA	nc|ENSG00000155719|Q7RTW8-4|OTOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.24614057384997	2	481.246141	960.477728	0.76705	0.00036914	-1.1466	-0.00055179	-0.37954	-0.00018265	481.24586316258257	38.372	0.096119	38.372	38.299	38.396	0	1371	37	0.79324204	0.022200942	0.79324204	322.28192	0	9.019897						75	5	2	NaN	NaN	NaN	0.83582	1	7344	7344		4.4131	1.2015	1	5864.9			9543	3885	5532	5646	7528	7528					-0.004091540478725619
HSREESISP	9	Unmodified	_HSREESISP_					0	0	0		ENST00000377044.8_2_9:74383313-74383778:-|nuORF	ENST00000377044.8_2_9:74383313-74383778:-|nuORF	ENST00000377044.8_2_9:74383313-74383778:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2516198822501	2	521.25162	1040.48869	3.023	0.0015758	-6.6716	-0.0034776	-3.6485	-0.0019018	521.2487007778466	16.491	0.047958	16.478	16.43	16.478	-0.012995	1299	31	0.8375814	0.018450797	0.83606195	339.92682	0	7.4881287						32	3	2	NaN	NaN	NaN	0.33629	1	10005	10005		16.584	3.5813	1	2153.4			9544	6705	5533	5647	7529	7529					-0.029937964642158477
HSSPEDPVL	9	Unmodified	_HSSPEDPVL_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.73781401524997	2	490.737814	979.461075	1.5646	0.00076782	-1.1157	-0.00054752	0.44891	0.0002203	490.7371385218518	17.162	0.071911	17.149	17.124	17.196	-0.013569	1362	37	0.79879075	0.022191346	0.7972713	324.4475	0	9.013519						62	4	2	NaN	NaN	NaN	0.31737	1	7693	7693		17.799	5.2111	1	6899.5			9545	5394	5534	5648	7530	7530					-0.02947699724472841
HSTPGAGG	8	Unmodified	_HSTPGAGG_					0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.15900258825	2	342.159003	682.303452	1.1872	0.0004062	-10.259	-0.0035103	-9.072	-0.0031041	342.15575459125347	33.285	0.14479	33.283	33.186	33.331	-0.0024757	1512	55	0.7060759	0.03347522	0.70455647	288.51202	0	13.678436						105	7	2	NaN	NaN	NaN	0.84207	1	2795	2795		3.5732	0	1	10522	+		9546	12477	5535	5649	7531	7531					-0.05040734473186603
HSTPGAGG	8	Unmodified						0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	342.159003	682.303452	1.5986	0.00054697	-7.1364	-0.0024418	-5.5378	-0.0018948	342.1564353429196	33.118	0.024113	33.118	33.118	33.142	0	1500	28	0.71351165	0.016729414	0.71351165	291.55035		6.8358765	-0.082556	0.0012849	0.0044776	NaN	3.5732	30	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1554.6	+		9547	12477	5535	5649							-0.05040734473186603
HSTPGAGG	8	Unmodified						0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.159003	682.303452	1.1872	0.0004062	-10.259	-0.0035103	-9.072	-0.0031041	342.15575459125347	33.285	0.14479	33.283	33.186	33.331	-0.0024757	1512	55	0.7060759	0.03347522	0.70455647	288.51202		13.678436	0.082556	-0.00085214	-0.0044776	NaN	3.5732	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10522	+		9548	12477	5535	5649							-0.05040734473186603
HSVGVVIGR	9	Unmodified	_HSVGVVIGR_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.2747010480501	2	462.274701	922.534849	1.1006	0.00050878	-2.6489	-0.0012245	-1.5483	-0.00071576	462.27324295881334	14.213	0.12013	14.213	14.189	14.309	0	1341	40	0.8117308	0.02402109	0.8117308	329.98495	0	9.765045						120	6	3	NaN	NaN	NaN	0.01966	1	6453	6453		72.428	39.976	1	17860			9549	1014	5536	5650	7532	7532					0.07048313228528968
HSVGVVIGR	9	Unmodified	_HSVGVVIGR_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.2747010480501	2	462.274701	922.534849	0.68296	0.00031571	-0.82442	-0.00038111	-0.14146	-6.5395E-05	462.2742716843258	14.284	0.1677	14.273	14.249	14.417	-0.011219	1338	34	0.81357855	0.020323336	0.8120591	330.7361	0	8.26181						166	8	3	NaN	NaN	NaN	0.060816	1	6329	6329		42.318	7.8788	1	19378			9550	1014	5536	5650	7533	7533					0.07048313228528968
HSVPIKVP	8	Unmodified	_HSVPIKVP_					0	0	0			REV__TOPBP1|p.E451K|1|0.34|ENSG00000163781|chr3:133649536-133649536|C/T|missense_variant	REV__TOPBP1|p.E451K|1|0.34|ENSG00000163781|chr3:133649536-133649536|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.5301639597002	1	876.530164	875.522887	1.649	0.0014454	1.2317	0.0010796	2.8807	0.002525	876.5314070644123	56.493	0.16785	56.493	56.421	56.589	0	375	46	1.3965509	0.026774883	1.3965509	284.09164	0	5.4466553						124	8	2	NaN	NaN	NaN	0.84455	1	5740	5740		2.7852	0.32367	1	9796.6	+		9551	13379	5537	5651	7534	7534					0.0801469648533839
HSVPIKVP	8	Unmodified						0	0	0			REV__TOPBP1|p.E451K|1|0.34|ENSG00000163781|chr3:133649536-133649536|C/T|missense_variant	REV__TOPBP1|p.E451K|1|0.34|ENSG00000163781|chr3:133649536-133649536|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	876.530164	875.522887	1.649	0.0014454	1.2317	0.0010796	2.8807	0.002525	876.5314070644123	56.493	0.16785	56.493	56.421	56.589	0	375	46	1.3965509	0.026774883	1.3965509	284.09164		5.4466553	-0.010708	-0.00069683	-0.00013278	NaN	2.7852	124	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9796.6	+		9552	13379	5537	5651							0.0801469648533839
HSVVHHGI	8	Unmodified	_HSVVHHGI_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4689606864002	1	885.468961	884.461684	1.5592	0.0013806	6.2622	0.005545	7.8214	0.0069256	885.4743018064441	31.065	0.096565	31.06	31.012	31.109	-0.0050716	1269	52	0.8560222	0.0313375	0.85450274	174.10802	0	6.3737793						91	5	2	NaN	NaN	NaN	0.84876	1	5746	5746		0.39566	0	1	7301.5			9553	1761	5538	5652	7535	7535					0.014831845059120496
HSVVHHGI	8	Unmodified						0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	885.468961	884.461684	1.1347	0.0010048	6.2528	0.0055367	7.3876	0.0065415	885.4740586972656	31.066	0.072412	31.066	31.042	31.115	0	1272	49	0.854179	0.029498875	0.854179	173.73312		5.999832	0.0030587	-4.6812E-06	-0.00016187	NaN	0.39566	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7719.8			9554	1761	5538	5652							0.014831845059120496
HTAHHSTIWH	10	Unmodified	_HTAHHSTIWH_					0	0	0			REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.7943205744501	2	613.794321	1225.57409	0.99033	0.00060786	-2.3632	-0.0014505	-1.3729	-0.00084268	614.2928889199522	35.529	0.048286	35.529	35.505	35.553	0.00053024	1179	40	0.9112251	0.023888946	0.90970564	369.08435	0	9.676056						43	3	2	NaN	NaN	NaN	0.75966	1	16432	16432		3.9685	0.39529	1	2916	+		9555	12236	5539	5653	7536	7536					-0.029675864878981884
HTCRIWNL	8	Unmodified	_HTCRIWNL_					0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7661859117001	2	521.766186	1041.51782	1.632	0.00085151	-5.4961	-0.0028677	-3.8642	-0.0020162	521.7637262578461	28.315	0.14477	28.315	28.243	28.388	0	1293	49	0.84127116	0.029518008	0.84127116	341.4199	0	11.979553						132	7	2	NaN	NaN	NaN	0.65542	1	10269	10269		21.835	2.6714	1	15650			9556	830	5540	5654	7537	7537					-0.0012793064895504358
HTCRIWNL	8	Unmodified						0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.766186	1041.51782	1.1253	0.00058715	-6.7458	-0.0035197	-5.6204	-0.0029326	521.7628370063592	28.314	0.16887	28.305	28.233	28.402	-0.0089779	1293	64	0.84127116	0.038719356	0.8397517	341.4199		15.713776	-0.0048553	-0.00057621	-0.00075972	NaN	21.835	182	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18116			9557	830	5540	5654							-0.0012793064895504358
HTDELRLI	8	Unmodified	_HTDELRLI_					0	0	0			REV__EARS2|p.D79H|1|0.34|ENSG00000103356|chr16:23552209-23552209|C/G|missense_variant	REV__EARS2|p.D79H|1|0.34|ENSG00000103356|chr16:23552209-23552209|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77727352675	2	498.777274	995.539994	2.0274	0.0010112	-1.7245	-0.00086012	0.30299	0.00015112	498.7762556422052	17.813	0.11991	17.813	17.765	17.885	0	1314	52	0.8283535	0.031374753	0.8283535	336.37988	0	12.740753						158	6	2	NaN	NaN	NaN	0.67593	1	8424	8424		20.555	3.6971	1	19635	+		9558	8336	5541	5655	7538	7538					0.04204572300466225
HTDPVDYEF	9	Unmodified	_HTDPVDYEF_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.74055366945	2	561.740554	1121.46655	1.461	0.00082069	-0.050573	-2.8409E-05	1.4104	0.00079228	561.7412312342223	21.103	0.096331	21.103	21.079	21.175	0	1281	37	0.84864825	0.022126555	0.84864825	344.09326	0	8.971436						112	5	3	NaN	NaN	NaN	0.49672	1	13727	13727		9.746	3.6557	1	12796			9559	5393	5542	5656	7539	7539					-0.08932020932661544
HTDPVDYEF	9	Unmodified	_HTDPVDYEF_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.74055366945	2	561.740554	1121.46655	1.1506	0.00064636	0.16234	9.1192E-05	1.313	0.00073755	561.7405170657861	21.103	0.09626	21.089	21.065	21.162	-0.014004	1278	52	0.85049206	0.0313375	0.8489726	344.84082	0	12.706085						123	5	3	NaN	NaN	NaN	0.31737	1	13324	13324		17.799	12.105	1	14952			9560	5393	5542	5656	7540	7540					-0.08932020932661544
HTEQCIKSE	9	Unmodified	_HTEQCIKSE_					0	0	0			REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7478557728001	2	537.747856	1073.48116	1.3646	0.00073384	3.5918	0.0019315	4.9565	0.0026653	538.2502398347978	34.855	0.14473	34.855	34.806	34.951	0	1266	61	0.85786515	0.036857605	0.85786515	348.01904	0	14.952423						268	7	4	NaN	NaN	NaN	0.41766	1	11691	11691		13.003	0.41496	1	26677	+		9561	11523	5543	5657	7541	7541					-0.05264272056160735
HTEQCIKSE	9	Unmodified						0	0	0			REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	REV__ENST00000256458.4_1_3:10283936-10284227:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.747856	1073.48116	1.3646	0.00073384	3.5918	0.0019315	4.9565	0.0026653	538.2502398347978	34.855	0.14473	34.855	34.806	34.951	0	1266	61	0.85786515	0.036857605	0.85786515	348.01904		14.952423	0.013145	0.00044384	0.00075972	NaN	13.003	268	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26677	+		9562	11523	5543	5657							-0.05264272056160735
HTGGGGAR	8	Unmodified	_HTGGGGAR_					0	0	0			REV__ENST00000366672.4_1_1:230415547-230415799:+|nuORF	REV__ENST00000366672.4_1_1:230415547-230415799:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3485111997	1	712.348511	711.341235	0.59942	0.00042699	1.9568	0.0013939	2.5562	0.0018209	712.3498665004053	37.458	0.14427	37.458	37.338	37.482	0	618	97	1.2513325	0.05761242	1.2513325	255.45763	0	11.76149						268	7	2	NaN	NaN	NaN	0.84887	1	3449	3449		0.32989	0	1	22703	+		9563	11854	5544	5658	7542	7542					-0.025982234877233168
HTGGGGAR	8	Unmodified	_HTGGGGAR_					0	0	0			REV__ENST00000366672.4_1_1:230415547-230415799:+|nuORF	REV__ENST00000366672.4_1_1:230415547-230415799:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3485111997	1	712.348511	711.341235	0.54055	0.00038506	2.5488	0.0018156	3.0893	0.0022007	712.3504124475451	37.554	0.16853	37.554	37.53	37.699	0	588	94	1.2693287	0.05580306	1.2693287	259.1315	0	11.39212						284	8	2	NaN	NaN	NaN	0.84887	1	3450	3450		0.32989	0	1	21872	+		9564	11854	5544	5658	7543	7543					-0.025982234877233168
HTHRYTHTDIH	11	Unmodified	_HTHRYTHTDIH_					0	0	0			REV__ENST00000397112.8_1_12:100567303-100567363:-|nuORF	REV__ENST00000397112.8_1_12:100567303-100567363:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3396235351	2	709.339624	1416.66469	0.95886	0.00068016	5.1155	0.0036287	6.0744	0.0043088	709.3436412661493	30.584	0.21722	30.584	30.535	30.753	0	1050	82	0.9900381	0.04935938	0.9900381	400.4039	0	19.962555						393	10	3	NaN	NaN	NaN	0.6875	1	20196	20196		8.2775	1.8476	1	50747	+		9565	12016	5545	5659	7544	7544					-0.026971622303108234
HTINGHNAEVR	11	Unmodified	_HTINGHNAEVR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.54617023723324	3	416.54617	1246.61668	2.8388	0.0011825	-2.0963	-0.00087319	0.74253	0.0003093	416.5449834173541	10.709	0.19178	10.709	10.661	10.852	0	1410	40	0.76917666	0.024083614	0.76917666	467.2312	0	14.629425						142	9	2	NaN	NaN	NaN	0.0053516	1	17685	17685		73.813	61.506	1	31321			9566	2329	5546	5660	7545	7545					0.0032376384963299643
HTINGHNAEVR	11	Unmodified	_HTINGHNAEVR_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.54617023723324	3	416.54617	1246.61668	1.2367	0.00051516	-0.82145	-0.00034217	0.41529	0.00017299	416.54579547186245	10.783	0.1438	10.775	10.656	10.799	-0.0071888	1410	37	0.76917666	0.02222979	0.7676573	467.2312	0	13.503357						189	7	4	NaN	NaN	NaN	0.040375	1	16948	16948		52.279	36.968	1	29884			9567	2329	5546	5660	7546	7546					0.0032376384963299643
HTINGHNAEVR	11	Unmodified						0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	416.54617	1246.61668	1.4644	0.00060997	-2.4311	-0.0010127	-0.96673	-0.00040269	416.545548716952	10.854	0.0479	10.847	10.847	10.895	-0.0071888	1413	34	0.7673241	0.02037841	0.76580465	466.10587		12.378754	0.069251	-0.00018035	-0.001686	NaN	73.813	61	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6859.1			9568	2329	5546	5660							0.0032376384963299643
HTLKAKGSAPA	11	Unmodified	_HTLKAKGSAPA_					0	0	0			REV__ENST00000470922.5_1_22:19165453-19166237:-|nuORF	REV__ENST00000470922.5_1_22:19165453-19166237:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.87685726243336	3	360.876857	1079.60874	1.8984	0.00068508	-7.3097	-0.0026379	-5.4113	-0.0019528	360.87474426467924	11.67	0.096044	11.662	11.566	11.662	-0.0075302	1515	28	0.7042165	0.016734898	0.70269704	428.49442	0	10.182678						68	5	2	NaN	NaN	NaN	0.44296	1	11663	11663		14.959	2.3897	1	6028	+		9569	8785	5547	5661	7547	7547					0.07212236600184951
HTPSFMLILR	10	Unmodified	_HTPSFMLILR_					0	0	0		ENST00000528108.1_1_11:74907538-74911433:+|nuORF;ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1	ENST00000528108.1_1_11:74907538-74911433:+|nuORF	ENST00000528108.1_1_11:74907538-74911433:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8393508548002	2	607.839351	1213.66415	1.0875	0.000661	-5.0348	-0.0030604	-3.9474	-0.0023994	607.8357586201511	24.767	0.048265	24.767	24.743	24.791	0	1152	43	0.92775106	0.025689125	0.92775106	375.81915	0	10.406311						58	3	2	NaN	NaN	NaN	0.73444	1	16825	16825		5.6942	1.7661	1	8982			9570	3088	5548	5662	7548	7548					0.0658632679630955
HTPYLIWFK	9	Unmodified	_HTPYLIWFK_					0	0	0			REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	REV__nc|ENSG00000242110|Q9UHK6-5|AMACR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.22196488703327	3	402.221965	1203.64407	0.93871	0.00037757	-1.5763	-0.00063402	-0.63759	-0.00025645	402.22118243493526	21.055	0.12031	21.055	20.959	21.079	0	1470	34	0.7320868	0.020422697	0.7320868	444.87476	0	12.410492						93	6	2	NaN	NaN	NaN	0.55027	1	16587	16587		4.3102	0	1	10374	+		9571	13244	5549	5663	7549	7549					0.050388991279760376
HTQMKITSTT	10	Unmodified	_HTQMKITSTT_					0	0	0			REV__nc|ENSG00000106258|P20815-2|CYP3A5	REV__nc|ENSG00000106258|P20815-2|CYP3A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.1973791235	3	383.197379	1146.57031	2.5087	0.00096133	5.7746	0.0022128	8.2833	0.0031741	383.19922700203784	17.882	0.095984	17.868	17.844	17.94	-0.013786	1524	37	0.698637	0.022321641	0.69711757	424.787	0	13.5720825						60	5	2	NaN	NaN	NaN	0.77928	1	14202	14202		0.21374	0	1	3875.3	+		9572	13103	5550	5664	7550	7550					0.0028856290334715595
HTSVMQRKRR	10	Unmodified	_HTSVMQRKRR_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.8647542508501	2	649.864754	1297.71496	1.1571	0.00075199	-2.9387	-0.0019098	-1.7816	-0.0011578	650.3626394252259	39.042	0.14465	39.047	38.999	39.143	0.0046806	1185	88	0.90755045	0.05330801	0.906031	367.3683	0	21.578613						340	7	5	NaN	NaN	NaN	0.76892	1	17907	17907		3.2116	0.32214	1	41138	+		9573	10051	5551	5665	7551	7551					0.078006688938558
HTSVMQRKRR	10	Unmodified						0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	649.864754	1297.71496	0.75368	0.00048979	-4.0537	-0.0026344	-3.3001	-0.0021446	650.3628815826575	39.044	0.21661	39.044	38.924	39.141	0	1191	85	0.90387505	0.051478148	0.90387505	365.88052		20.837921	-0.0013008	-0.00062418	-0.001078	NaN	3.2116	460	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49375	+		9574	10051	5551	5665							0.078006688938558
HTSVMQRKRR	10	Unmodified						0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.864754	1297.71496	1.1571	0.00075199	-2.9387	-0.0019098	-1.7816	-0.0011578	650.3626394252259	39.042	0.14465	39.047	38.999	39.143	0.0046806	1185	88	0.90755045	0.05330801	0.906031	367.3683		21.578613	0.0013008	0.00082504	0.001078	NaN	3.2116	340	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41138	+		9575	10051	5551	5665							0.078006688938558
HTVETATSPTD	11	Unmodified	_HTVETATSPTD_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1158.5273230057999	1	1158.52732	1157.52005	2.2009	0.0025498	-1.4774	-0.0017117	0.72341	0.00083809	1158.526717030073	31.935	0.1207	31.935	31.911	32.032	0	96	55	1.5617468	0.03181255	1.5617468	316.49673	0	6.446991						173	6	3	NaN	NaN	NaN	0.48069	1	15060	15060		19.164	4.7386	1	15603			9576	3968	5552	5666	7552	7552					-0.05241268220811435
HVAAAAAG	8	Unmodified	_HVAAAAAG_					0	0	0		ENST00000395348.7_1_10:61444064-61469743:-|nuORF	ENST00000395348.7_1_10:61444064-61469743:-|nuORF	ENST00000395348.7_1_10:61444064-61469743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3521995941	1	667.3522	666.344923	1.1977	0.00079929	-2.2914	-0.0015292	-1.0937	-0.00072988	667.3509514893648	35.844	0.14465	35.844	35.795	35.94	0	777	73	1.1556307	0.04346907	1.1556307	236.22101	0	8.885452						154	7	2	NaN	NaN	NaN	0.84876	1	2493	2493		0.39566	0	1	14007			9577	6784	5553	5667	7553	7553					-0.001595537138769032
HVAAPGNG	8	Unmodified	_HVAAPGNG_					0	0	0			REV__ENST00000519199.5_2_8:124429089-124447771:+|nuORF	REV__ENST00000519199.5_2_8:124429089-124447771:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3580132535001	1	722.358013	721.350737	0.9141	0.00066031	-7.1743	-0.0051824	-6.2602	-0.0045221	722.352691682482	32.128	0.19304	32.128	32.08	32.273	0	621	52	1.2495319	0.030614734	1.2495319	255.02318	0	6.2483215						156	9	2	NaN	NaN	NaN	0.84651	1	3610	3610		1.6704	0.2308	1	15031	+		9578	10133	5554	5668	7554	7554					-0.021084552021875425
HVAGAHAA	8	Unmodified	_HVAGAHAA_					0	0	0			REV__ENSG00000197705|ENST00000359358|KLHL14	REV__ENSG00000197705|ENST00000359358|KLHL14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3739976687	1	733.373998	732.366721	0.66957	0.00049104	-7.3732	-0.0054073	-6.7036	-0.0049162	733.3689577105262	44.518	0.52752	44.529	44.433	44.961	0.011646	690	421	1.2080631	0.25439078	1.2065437	246.49048	0	51.905304						1179	23	4	NaN	NaN	NaN	0.84876	1	3711	3711		0.39566	0	1	232400	+		9579	11157	5555	5669	7555	7555					-0.01016748965298575
HVAGYEHEL	9	Unmodified	_HVAGYEHEL_					0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7512557415	2	527.751256	1053.48796	1.2757	0.00067326	-0.78651	-0.00041508	0.48919	0.00025817	527.7506230136767	14.045	0.14392	14.034	13.986	14.13	-0.010672	1263	31	0.85970795	0.018426836	0.8581885	348.8505	0	7.4772034						109	7	3	NaN	NaN	NaN	0.36492	1	10555	10555		15.175	8.3122	1	7992.9			9580	95	5556	5670	7556	7556					-0.03664591113283677
HVAGYEHEL	9	Unmodified						0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.751256	1053.48796	1.9212	0.0010139	-2.5834	-0.0013634	-0.66218	-0.00034947	527.7495274992468	13.949	0.096046	13.949	13.925	14.021	0	1266	37	0.85786515	0.02211219	0.85786515	348.10272		8.972626	-0.042593	-0.0010238	-0.00016167	NaN	15.175	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8883.2			9581	95	5556	5670							-0.03664591113283677
HVAMQWLHVTI	11	Unmodified	_HVAMQWLHVTI_					0	0	0			REV__ENSG00000213231|ENST00000340722|TCL1B	REV__ENSG00000213231|ENST00000340722|TCL1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.57278031236666	3	445.57278	1333.69651	0.79659	0.00035494	8.4707	0.0037743	9.2673	0.0041293	445.5763246425538	12.436	0.192	12.436	12.412	12.604	0	1371	55	0.79324204	0.03330499	0.79324204	481.50522	0	20.21643						219	9	3	NaN	NaN	NaN	0.59348	1	19312	19312		14.45	7.1602	1	45440	+		9582	11281	5557	5671	7557	7557					0.043011141992792545
HVANTLSVYR	10	Unmodified	_HVANTLSVYR_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;PIGK|p.L158*|1|0.36|ENSG00000142892|chr1:77166735-77166735|A/-|frameshift_variant	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.31455449005	2	580.314554	1158.61456	1.6261	0.00094363	-4.7432	-0.0027525	-3.1171	-0.0018089	580.3102057261427	14.957	0.048064	14.957	14.933	14.981	0	1203	55	0.8965218	0.0331074	0.8965218	363.36255	0	13.418518						81	3	3	NaN	NaN	NaN	0.28195	1	15103	15103		28.495	13.033	1	7405.5			9583	3390	5558	5672	7558	7558					0.04159335111830842
HVAPSDTVL	9	Unmodified	_HVAPSDTVL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.75072442525	2	469.750724	937.486896	1.5453	0.00072593	-1.5394	-0.00072311	0.0059886	2.8131E-06	469.7504947053705	17.285	0.047922	17.285	17.261	17.309	0	1368	49	0.7950918	0.029585183	0.7950918	323.14523	0	12.02417						60	3	2	NaN	NaN	NaN	0.53206	1	6770	6770		8.2903	3.3806	1	4048.5			9584	5799	5559	5673	7559	7559					0.01565194517809232
HVAQGDATL	9	Unmodified	_HVAQGDATL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.23269884760003	2	456.232699	910.450845	1.4392	0.0006566	-0.30234	-0.00013794	1.1368	0.00051866	456.23184826559196	13.685	0.11985	13.675	13.675	13.794	-0.010672	1383	37	0.7858409	0.02220571	0.7843215	319.5224	0	9.028839						81	6	2	NaN	NaN	NaN	0.14787	1	6111	6111		28.896	12.479	1	5386.7			9585	517	5560	5674	7560	7560					-0.007962626590369837
HVDEFIDEL	9	Unmodified	_HVDEFIDEL_					0	0	0		ENSG00000134748|ENST00000257181|PRPF38A	ENSG00000134748|ENST00000257181|PRPF38A	ENSG00000134748|ENST00000257181|PRPF38A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.76402876575	2	558.764029	1115.5135	1.8432	0.0010299	0.19613	0.00010959	2.0393	0.0011395	558.7645169045933	25.515	0.14478	25.503	25.455	25.6	-0.0116	1248	46	0.8689189	0.027629793	0.86739945	352.335	0	11.203522						127	7	2	NaN	NaN	NaN	0.29681	1	13101	13101		19.118	5.0767	1	21522			9586	2889	5561	5675	7561	7561					-0.03963161381534519
HVDSAYFPGS	10	Unmodified	_HVDSAYFPGS_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000204352|Q5T035|FAM120A2P;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.49793451146667	3	360.497935	1078.47197	1.8438	0.0006647	7.8011	0.0028123	9.645	0.003477	360.5005269267867	20.021	0.21627	20.021	19.948	20.165	0	1515	46	0.7042165	0.027894557	0.7042165	428.5	0	16.973206						259	10	3	NaN	NaN	NaN	0.67523	1	11899	11899		5.0169	0.39941	1	54713			9587	561;7899	5562	5676	7562	7562					-0.06412297350175322
HVDTWVIAL	9	Unmodified	_HVDTWVIAL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.29001676125	2	527.290017	1052.56548	1.4148	0.00074601	-1.2712	-0.00067027	0.14364	7.574E-05	527.2889331087235	28.846	0.16896	28.846	28.798	28.967	0	1263	82	0.85970795	0.049755156	0.85970795	348.85443	0	20.189789						218	8	3	NaN	NaN	NaN	0.14301	1	10750	10750		29.598	11.799	1	26553			9588	4713	5563	5677	7563	7563					0.04130046822865552
HVDTWVIAL	9	Unmodified	_HVDTWVIAL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.29001676125	2	527.290017	1052.56548	0.87042	0.00045897	-0.12991	-6.8501E-05	0.74051	0.00039046	527.2899958092199	28.869	0.19308	28.861	28.789	28.982	-0.0083504	1263	79	0.85970795	0.04791498	0.8581885	348.85443	0	19.443054						248	9	3	NaN	NaN	NaN	0.03623	1	10525	10525		52.758	33.64	1	30022			9589	4713	5563	5677	7564	7564					0.04130046822865552
HVELPVKDP	9	Unmodified	_HVELPVKDP_					0	0	0			REV__nc|ENSG00000138669|Q13237-2|PRKG2	REV__nc|ENSG00000138669|Q13237-2|PRKG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2874740723	2	517.287474	1032.5604	1.002	0.0005183	-8.0405	-0.0041593	-7.0386	-0.003641	517.2839436939229	27.711	0.048256	27.702	27.677	27.726	-0.009552	1275	43	0.85233563	0.025808692	0.8508162	345.94943	0	10.475342						74	3	2	NaN	NaN	NaN	0.58159	1	9687	9687		6.2502	0.78436	1	14679	+		9590	9738	5564	5678	7565	7565					0.04541742960282136
HVETGEIVAL	10	Unmodified	_HVETGEIVAL_					0	0	0		ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;ENSG00000156345|ENST00000325303|CDK20	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	ENST00000604175.5_1_9:90586022-90589430:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5731509864	1	1067.57315	1066.56587	1.6974	0.0018121	0.012174	1.2997E-05	1.7096	0.0018251	1067.574673423515	21.994	0.072174	21.98	21.956	22.028	-0.013897	147	40	1.5316714	0.023023248	1.530152	310.71378	0	4.670471						55	4	2	NaN	NaN	NaN	0.33935	1	11148	11148		26.115	14.066	1	3675.3			9591	3914	5565	5679	7566	7566					0.03525421752101465
HVFDMLNRRY	10	Unmodified	_HVFDMLNRRY_					0	0	0		ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENST00000448133.1_1_13:61211649-61211793:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.89603448040003	3	450.896034	1349.66627	1.1173	0.0005038	2.0485	0.00092368	3.1659	0.0014275	450.8970690770858	21.561	0.12047	21.561	21.537	21.657	0	1371	34	0.79324204	0.020347536	0.79324204	481.4469	0	12.34964						74	6	2	NaN	NaN	NaN	0.77421	1	19544	19544		0.71611	0	1	5579.3			9592	7030	5566	5680	7567	7567					0.005427555341157131
HVFDMLNRRY	10	Unmodified						0	0	0		ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENST00000448133.1_1_13:61211649-61211793:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	450.896034	1349.66627	1.737	0.0007832	1.4141	0.00063759	3.151	0.0014208	450.8968057721972	21.705	0.096338	21.691	21.643	21.74	-0.013897	1371	28	0.79324204	0.016646206	0.7917226	481.4469		10.10318	0.065268	-0.00053905	-0.00075972	NaN	0.71611	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3973.2			9593	7030	5566	5680							0.005427555341157131
HVFLRLVP	8	Unmodified	_HVFLRLVP_					0	0	0		ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.6039976048	1	980.603998	979.596721	2.2174	0.0021744	-11.901	-0.01167	-9.6836	-0.0094958	980.5926659111119	58.317	0.047974	58.317	58.269	58.317	0	201	34	1.4997677	0.019518495	1.4997677	304.5866	0	3.9639893						37	3	2	NaN	NaN	NaN	0.84207	1	7883	7883		3.5732	0	1	2283.6			9594	6215	5567	5681	7568	7568					0.10610664647640533
HVFLRLVP	8	Unmodified						0	0	0		ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	ENST00000156825.5_1_19:1576713-1576977:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	980.603998	979.596721	0.44561	0.00043697	-10.832	-0.010622	-10.387	-0.010185	980.5936200287741	58.314	0.071968	58.314	58.266	58.338	-0.00048447	201	49	1.4997677	0.028385997	1.4982482	304.5866		5.7648926	-0.0014476	0.00044614	-0.00075972	NaN	3.5732	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4238.3			9595	6215	5567	5681							0.10610664647640533
HVFRWLAYSYA	11	Unmodified	_HVFRWLAYSYA_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.8591291692002	2	706.859129	1411.70371	1.9219	0.0013585	-6.8346	-0.0048311	-4.9128	-0.0034726	706.8545241031642	25.925	0.072376	25.914	25.89	25.962	-0.0116	1074	43	0.9754029	0.025617182	0.97388345	394.49838	0	10.360809						81	4	2	NaN	NaN	NaN	0.76304	1	19205	19205		3.2116	0	1	9684.4			9596	2306	5568	5682	7569	7569					0.01432170071393557
HVFWLLSD	8	Unmodified	_HVFWLLSD_					0	0	0		ENST00000393766.6_1_4:166263162-166263234:+|nuORF	ENST00000393766.6_1_4:166263162-166263234:+|nuORF	ENST00000393766.6_1_4:166263162-166263234:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5199932039001	1	1016.51999	1015.51272	2.0095	0.0020427	5.6489	0.0057422	7.6583	0.0077849	1016.5288159334152	32.61	0.04829	32.607	32.607	32.655	-0.0031052	153	46	1.5281296	0.026576638	1.5266101	310.19424	0	5.3947754						60	3	2	NaN	NaN	NaN	0.79379	1	9022	9022		10.052	0.92837	1	3564.1			9597	6770	5569	5683	7570	7570					0.005580887600899587
HVGAGSLC	8	Unmodified	_HVGAGSLC_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3504850346001	1	743.350485	742.343209	1.6302	0.0012118	-5.2896	-0.003932	-3.6594	-0.0027202	743.3468096786783	30.848	0.12069	30.842	30.794	30.915	-0.0057545	576	52	1.2765218	0.030569077	1.2750024	260.39432	0	6.2356873						73	6	2	NaN	NaN	NaN	0.84207	1	3867	3867		3.5732	0	1	5921.3			9598	7955	5570	5684	7571	7571					-0.038269307941277475
HVGAGSLC	8	Unmodified						0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.350485	742.343209	1.0471	0.00077838	1.5021	0.0011166	2.5492	0.001895	743.3514640983389	30.801	0.048264	30.801	30.753	30.801	0	567	61	1.2819146	0.035961628	1.2819146	261.49435		7.335724	-0.020699	0.0020096	0.0034561	NaN	3.5732	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4416.6			9599	7955	5570	5684							-0.038269307941277475
HVGARGPP	8	Unmodified	_HVGARGPP_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.4318468986002	1	790.431847	789.42457	1.6899	0.0013357	2.2475	0.0017765	3.9374	0.0031123	790.4334806003571	28.87	0.096542	28.87	28.846	28.943	0	546	46	1.294491	0.02693522	1.294491	263.77402	0	5.488495						84	5	2	NaN	NaN	NaN	0.84207	1	4622	4622		3.5732	1.9029	1	8812.8			9600	4787	5571	5685	7572	7572					0.02143512960140015
HVGARSPK	8	Unmodified	_HVGARSPK_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.4846107506002	1	851.484611	850.477334	1.2638	0.0010761	-1.207	-0.0010277	0.056797	4.8362E-05	851.4836555592717	30.269	0.072361	30.263	30.263	30.335	-0.0064106	471	49	1.3393306	0.028656006	1.3378111	272.5757	0	5.83197						54	4	2	NaN	NaN	NaN	0.84876	1	5260	5260		0.39566	0	1	4440.3	+		9601	11071	5572	5686	7573	7573					0.046114710229517186
HVIADQEVM	9	Oxidation (M)	_HVIADQEVM(Oxidation (M))_		HVIADQEVM(1)		HVIADQEVM(59)	0	0	1		ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2527739752001	2	529.252774	1056.491	1.3271	0.00070235	-0.64636	-0.00034209	0.6807	0.00036026	529.2531499929429	14.549	0.11998	14.549	14.525	14.645	0	1302	46	0.8357362	0.027674615	0.8357362	339.11087	0	11.22934						135	6	3	NaN	NaN	NaN	0.030391	1	10928	10928		58.599	35.265	1	13942			9602	1289	5573	5687	7574	7574		141			-0.034990840507816756
HVIAEDVKL	9	Unmodified	_HVIAEDVKL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2952991044001	2	512.295299	1022.57605	2.4586	0.0012595	-2.7812	-0.0014248	-0.32263	-0.00016528	512.2938929588207	18.292	0.095835	18.292	18.245	18.34	0	1275	40	0.85233563	0.023963928	0.85233563	345.99384	0	9.727814						124	5	3	NaN	NaN	NaN	0.041983	1	9470	9470		50.315	28.48	1	23161			9603	5219	5574	5688	7575	7575					0.06566029477335178
HVIAEDVKL	9	Unmodified	_HVIAEDVKL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2952991044001	2	512.295299	1022.57605	1.7683	0.0009059	-1.1469	-0.00058755	0.62142	0.00031835	512.2948541300517	18.386	0.19209	18.372	18.324	18.516	-0.01395	1275	43	0.85233563	0.025808692	0.8508162	345.99384	0	10.476685						178	9	3	NaN	NaN	NaN	0.024221	1	9283	9283		66.656	40.541	1	24654			9604	5219	5574	5688	7576	7576					0.06566029477335178
HVIEFYEEIL	10	Unmodified	_HVIEFYEEIL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3320785412001	2	646.332079	1290.6496	1.5661	0.0010122	-1.8118	-0.001171	-0.24564	-0.00015876	646.3311390164836	29.449	0.07239	29.449	29.401	29.474	0	1113	43	0.9515937	0.025661409	0.9515937	385.2188	0	10.388123						85	4	2	NaN	NaN	NaN	0.70677	1	18602	18602		7.5876	0.60324	1	8159.2			9605	2831	5575	5689	7577	7577					0.01590533129137839
HVINNHLNPP	10	Unmodified	_HVINNHLNPP_					0	0	0		ENST00000525653.1_1_1:70820542-70820707:+|nuORF	ENST00000525653.1_1_1:70820542-70820707:+|nuORF	ENST00000525653.1_1_1:70820542-70820707:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8068966334502	2	577.806897	1153.59924	1.9118	0.0011046	-8.8668	-0.0051233	-6.9551	-0.0040187	577.8027235347605	16.494	0.047926	16.494	16.494	16.542	0	1215	43	0.8891654	0.025758564	0.8891654	360.3994	0	10.440552						53	3	2	NaN	NaN	NaN	0.68669	1	14930	14930		8.962	0	1	4772.7			9606	7424	5576	5690	7578	7578					0.028584683146618772
HVINNHLNPP	10	Unmodified						0	0	0		ENST00000525653.1_1_1:70820542-70820707:+|nuORF	ENST00000525653.1_1_1:70820542-70820707:+|nuORF	ENST00000525653.1_1_1:70820542-70820707:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.806897	1153.59924	2.6015	0.0015032	-9.7313	-0.0056228	-7.1298	-0.0041197	577.802331980936	16.73	0.095798	16.717	16.669	16.765	-0.013296	1209	25	0.892844	0.0147128105	0.8913246	361.89044		5.96344	0.11168	-0.00047664	0.0010796	NaN	8.962	49	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2609.2			9607	7424	5576	5690							0.028584683146618772
HVKELMLLI	9	Unmodified	_HVKELMLLI_					0	0	0		nc|ENSG00000272987|P0C617|OR5AL1	nc|ENSG00000272987|P0C617|OR5AL1	nc|ENSG00000272987|P0C617|OR5AL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.89133883546674	3	365.891339	1094.65219	2.1521	0.00078742	-4.6354	-0.001696	-2.4833	-0.00090863	365.8893808151557	25.153	0.14476	25.141	25.117	25.262	-0.012011	1500	31	0.71351165	0.018585265	0.7119922	434.07516	0	11.30661						85	7	2	NaN	NaN	NaN	0.61852	1	12297	12297		2.7042	0.60162	1	6178.4			9608	8056	5577	5691	7579	7579					0.10864710053124327
HVKGKSYPFR	10	Unmodified	_HVKGKSYPFR_					0	0	0		nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB	nc|ENSG00000069535|P27338-2|MAOB	nc|ENSG00000069535|P27338-2|MAOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.8407394508	2	609.840739	1217.66693	1.5185	0.00092607	5.5934	0.0034111	7.1119	0.0043371	609.8436942699736	26.336	0.072386	26.336	26.312	26.384	0	1131	37	0.94059354	0.022005022	0.94059354	381.00732	0	8.913605						65	4	2	NaN	NaN	NaN	0.73444	1	16939	16939		5.6942	0.24423	1	8311.7			9609	744	5578	5692	7580	7580					0.06679918245458794
HVKGKSYPFR	10	Unmodified						0	0	0		nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB	nc|ENSG00000069535|P27338-2|MAOB	nc|ENSG00000069535|P27338-2|MAOB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.840739	1217.66693	1.3708	0.00083598	4.0858	0.0024917	5.4566	0.0033276	609.8420968468344	26.336	0.048252	26.324	26.3	26.349	-0.011137	1131	37	0.94059354	0.022005022	0.93907416	381.00732		8.913605	-0.0057035	-0.0012612	-0.00075972	NaN	5.6942	62	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6886.4			9610	744	5578	5692							0.06679918245458794
HVLEEVESL	9	Unmodified	_HVLEEVESL_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7743964868001	2	527.774396	1053.53424	1.769	0.00093362	-1.9612	-0.0010351	-0.19223	-0.00010145	527.7729248831254	22.356	0.14454	22.356	22.332	22.477	0	1269	79	0.8560222	0.047935665	0.8560222	347.3547	0	19.451233						306	7	4	NaN	NaN	NaN	0.012648	1	10795	10795		84.879	26.28	1	65002			9611	3428	5579	5693	7581	7581					0.00961428998152769
HVLEEVESL	9	Unmodified	_HVLEEVESL_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7743964868001	2	527.774396	1053.53424	1.0309	0.00054408	-0.51554	-0.00027209	0.51536	0.00027199	527.7740559987418	22.404	0.24089	22.39	22.342	22.583	-0.013733	1272	67	0.854179	0.0405609	0.8526596	346.60678	0	16.45871						316	11	3	NaN	NaN	NaN	0.023074	1	10573	10573		68.108	12.615	1	64755			9612	3428	5579	5693	7582	7582					0.00961428998152769
HVLEEVESL	9	Unmodified	_HVLEEVESL_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;ENST00000461212.5_1_1:212125793-212148678:-|nuORF	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.541516507	1	1054.54152	1053.53424	1.6469	0.0017367	0.21489	0.00022661	1.8618	0.0019633	1054.5425608874705	22.404	0.096205	22.39	22.342	22.438	-0.013733	141	43	1.5352125	0.024785161	1.5336931	311.48132	0	5.0286865						86	5	2	NaN	NaN	NaN	0.23112	1	10574	10574		23.334	8.159	1	7357			9613	3428	5579	5693	7583	7583					0.00961428998152769
HVLHRFADR	9	Unmodified	_HVLHRFADR_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.2124628332333	3	384.212463	1149.61556	1.9935	0.00076591	1.1196	0.00043015	3.113	0.0011961	384.21285366434523	23.32	0.072351	23.307	23.258	23.331	-0.013296	1431	31	0.75620437	0.018538952	0.7546849	459.77484	0	11.271698						54	4	2	NaN	NaN	NaN	0.51184	1	14290	14290		5.1889	0	1	7748.7	+		9614	9845	5580	5694	7584	7584					0.046735942713894474
HVLLVEPIL	9	Unmodified	_HVLLVEPIL_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.8262350920501	2	516.826235	1031.63792	1.1312	0.00058463	-1.4056	-0.00072643	-0.27438	-0.0001418	516.825376358893	28.483	0.072374	28.475	28.451	28.523	-0.0083504	1248	67	0.8689189	0.04050839	0.86739945	352.68442	0	16.441895						99	4	2	NaN	NaN	NaN	0.27442	1	9659	9659		20.555	9.9505	1	9532			9615	3565	5581	5695	7585	7585					0.12336380896454102
HVLLVEPIL	9	Unmodified						0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.826235	1031.63792	1.8443	0.00095318	-1.5107	-0.00078079	0.33357	0.0001724	516.8256626754454	28.46	0.04829	28.46	28.436	28.484	0	1251	73	0.8670771	0.04420048	0.8670771	351.93686		17.94049	-0.0075591	-5.8036E-05	-0.00016117	NaN	20.555	107	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11558			9616	3565	5581	5695							0.12336380896454102
HVLMKLRNLQ	10	Unmodified	_HVLMKLRNLQ_					0	0	0			REV__nc|ENSG00000174446|O75971-2|SNAPC5	REV__nc|ENSG00000174446|O75971-2|SNAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.91665847216666	3	417.916658	1250.72815	2.4602	0.0010281	-10.581	-0.0044221	-8.1212	-0.003394	418.24636510099515	25.588	0.048208	25.588	25.564	25.612	0	1413	28	0.7673241	0.016673267	0.7673241	466.08914	0	10.127686						30	3	2	NaN	NaN	NaN	0.77585	1	17788	17788		1.5256	0	1	1522.2	+		9617	13173	5582	5696	7586	7586					0.1128110695324267
HVLQHARC	8	Unmodified	_HVLQHARC_					0	0	0			REV__nc|ENSG00000119414|O00743-2|PPP6C	REV__nc|ENSG00000119414|O00743-2|PPP6C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	321.8362275042	3	321.836228	962.486853	1.4191	0.00045673	5.1774	0.0016663	6.5965	0.002123	321.83792881317163	12.606	0.21623	12.597	12.549	12.765	-0.0088415	1530	52	0.6949163	0.031627536	0.69339687	423.4818	0	19.273804						281	10	3	NaN	NaN	NaN	0.81807	1	7250	7250		4.4131	0.44458	1	40158	+		9618	9289	5583	5697	7587	7587					0.0041091603681024935
HVLYSLQS	8	Unmodified	_HVLYSLQS_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.7532671142	2	473.753267	945.491981	1.0754	0.00050947	-4.9748	-0.0023568	-3.8994	-0.0018473	473.7504991248343	26.843	0.072422	26.843	26.819	26.891	0	1353	91	0.8043377	0.055406213	0.8043377	326.863	0	22.515747						99	4	2	NaN	NaN	NaN	0.8439	1	6961	6961		3.1533	0.36816	1	8733.3	+		9619	8596	5584	5698	7588	7588					0.01705498380431436
HVNQAKQML	9	Unmodified	_HVNQAKQML_					0	0	0		POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7845756301001	2	534.784576	1067.5546	0.89878	0.00048065	-5.7553	-0.0030779	-4.8566	-0.0025972	534.7815536960118	14.98	0.19231	14.968	14.872	15.064	-0.011738	1257	37	0.86339295	0.022104979	0.8618735	350.28622	0	8.968201						114	9	2	NaN	NaN	NaN	0.53206	1	11177	11177		8.2903	0.70269	1	9182.9			9620	871	5585	5699	7589	7589					0.02352321176977057
HVNQAKQML	9	Unmodified						0	0	0		POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.784576	1067.5546	1.7348	0.00092777	-7.6497	-0.004091	-5.9149	-0.0031632	534.7813568128457	14.981	0.14418	14.981	14.837	14.981	0	1302	43	0.8357362	0.025828242	0.8357362	339.06567		10.47876	0.0066413	-0.001388	-0.013069	NaN	8.2903	97	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7473.1			9621	871	5585	5699							0.02352321176977057
HVPEHAVVL	9	Unmodified	_HVPEHAVVL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.78235890465004	2	500.782359	999.550165	1.808	0.00090539	-1.5095	-0.00075595	0.29841	0.00014944	500.7813723175446	16.155	0.3356	16.142	15.998	16.334	-0.012993	1281	73	0.84864825	0.044277012	0.8471288	344.60236	0	17.979156						239	15	2	NaN	NaN	NaN	0.33629	1	8400	8400		16.584	1.4088	1	29731			9622	4687	5586	5700	7590	7590					0.050371800257153154
HVPEVEVQVKR	11	Unmodified	_HVPEVEVQVKR_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5858544049666	3	440.585854	1318.73573	1.0244	0.00045132	-0.51379	-0.00022637	0.51057	0.00022495	440.5855592528666	14.381	0.095933	14.381	14.357	14.453	0	1410	31	0.76917666	0.018524826	0.76917666	466.95163	0	11.246063						102	5	3	NaN	NaN	NaN	0.10804	1	19098	19098		38.881	30.94	1	11049			9623	6176	5587	5701	7591	7591					0.08911537754488563
HVPEVEVQVKR	11	Unmodified	_HVPEVEVQVKR_					0	0	0		ENST00000553597.5_1_15:25166388-25213181:+|nuORF;ENSG00000273173|ENST00000577949|SNURF;ENST00000400100.5_1_15:25165251-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	ENST00000553597.5_1_15:25166388-25213181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.5858544049666	3	440.585854	1318.73573	0.9826	0.00043292	-1.1429	-0.00050355	-0.16031	-7.063E-05	440.58527666412994	14.5	0.11981	14.489	14.441	14.561	-0.011218	1407	31	0.77102906	0.018522859	0.7695096	468.07617	0	11.244812						122	6	3	NaN	NaN	NaN	0.076425	1	18247	18247		43.133	34.129	1	11988			9624	6176	5587	5701	7592	7592					0.08911537754488563
HVPFPFDETEL	11	Unmodified	_HVPFPFDETEL_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;ENSG00000176853|ENST00000334705|FAM91A1	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.8193353067	2	665.819335	1329.62412	1.6925	0.0011269	-4.0973	-0.0027281	-2.4048	-0.0016012	666.3181744370985	28.581	0.21721	28.581	28.46	28.677	0	1119	76	0.9479278	0.045841277	0.9479278	383.61566	0	18.551453						222	10	3	NaN	NaN	NaN	0.12501	1	19244	19244		37.302	24.733	1	30672			9625	5043	5588	5702	7593	7593					-0.02750941393287576
HVPFPFDETEL	11	Unmodified	_HVPFPFDETEL_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;ENSG00000176853|ENST00000334705|FAM91A1	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.8193353067	2	665.819335	1329.62412	1.4056	0.0009359	-3.968	-0.002642	-2.5624	-0.0017061	666.318240656609	28.628	0.19301	28.62	28.499	28.692	-0.0083504	1116	58	0.94976085	0.034828126	0.9482414	384.35748	0	14.094543						181	9	3	NaN	NaN	NaN	0.37016	1	18388	18388		23.118	11.947	1	22760			9626	5043	5588	5702	7594	7594					-0.02750941393287576
HVPHPSMTSQ	10	Unmodified	_HVPHPSMTSQ_					0	0	0		ENSG00000176165|ENST00000313071|FOXG1	ENSG00000176165|ENST00000313071|FOXG1	ENSG00000176165|ENST00000313071|FOXG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.1783189475334	3	374.178319	1119.51313	3.1725	0.0011871	1.5049	0.00056312	4.6774	0.0017502	374.1790827566599	15.724	0.43126	15.711	15.543	15.975	-0.012611	1416	238	0.76547134	0.14632308	0.7639519	465.5572	0	88.993256						1886	19	6	NaN	NaN	NaN	0.507	1	13241	13241		11.561	0	1	2510300			9627	5014	5589	5703	7595	7595					-0.041848595823466894
HVRQHCQF	8	Unmodified	_HVRQHCQF_					0	0	0			REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	REV__nc|ENSG00000131115|Q86WZ6-2|ZNF227	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7536098527	2	527.75361	1053.49267	1.9212	0.0010139	-7.044	-0.0037175	-5.1228	-0.0027036	527.7495274992468	13.949	0.096046	13.949	13.925	14.021	0	1266	37	0.85786515	0.02211219	0.85786515	348.10272	0	8.972626						75	5	2	NaN	NaN	NaN	0.79379	1	10779	10779		10.052	0.30557	1	8883.2	+		9628	9508	5590	5704	7596	7596					-0.03193985451525805
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.7560067684	2	478.756007	955.497461	2.4152	0.0011563	-3.3175	-0.0015883	-0.9023	-0.00043198	478.75455371593466	18.412	0.26391	18.412	18.364	18.628	0	1347	61	0.8080346	0.03696549	0.8080346	328.3161	0	15.019623						393	12	4	NaN	NaN	NaN	0.03623	1	7217	7217		52.758	27.797	1	106240		+	9629	219	5591	5705	7597	7597					0.01793177172248761
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5047370702001	1	956.504737	955.497461	2.1393	0.0020463	0.95393	0.00091244	3.0933	0.0029587	956.505782012205	18.436	0.11989	18.436	18.388	18.508	0	282	55	1.4517976	0.03202927	1.4517976	294.9475	0	6.50708						153	6	2	NaN	NaN	NaN	0.025843	1	7220	7220		64.55	38.435	1	15412		+	9630	219	5591	5705	7598	7598					0.01793177172248761
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.7560067684	2	478.756007	955.497461	2.1847	0.0010459	-2.0932	-0.0010021	0.09149	4.3801E-05	478.7550789884077	18.458	0.21603	18.444	18.396	18.612	-0.01395	1347	61	0.8080346	0.036957502	0.8065152	328.31607	0	15.016357						379	10	4	NaN	NaN	NaN	0.020004	1	7078	7078		71.993	35.957	1	110920		+	9631	219	5591	5705	7599	7599					0.01793177172248761
HVSDTSVVL	9	Unmodified	_HVSDTSVVL_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5047370702001	1	956.504737	955.497461	2.1442	0.002051	-0.35911	-0.00034349	1.7851	0.0017075	956.5040598175104	18.458	0.14404	18.444	18.396	18.54	-0.01395	282	52	1.4517976	0.030248284	1.4502782	294.9475	0	6.145233						174	7	3	NaN	NaN	NaN	0.018156	1	7081	7081		74.332	37.03	1	16192		+	9632	219	5591	5705	7600	7600					0.01793177172248761
HVSLITPTKR	10	Unmodified	_HVSLITPTKR_					0	0	0		ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.5680236938	3	384.568024	1150.68224	1.3598	0.00052295	-1.4477	-0.00055674	-0.087868	-3.3791E-05	384.567387917122	13.204	0.21622	13.204	13.132	13.349	0	1455	34	0.7413668	0.020409405	0.7413668	450.7486	0	12.408844						143	10	3	NaN	NaN	NaN	0.0027333	1	14844	14844		62.675	44.117	1	21513			9633	3924	5592	5706	7601	7601					0.11292785042655851
HVSNLEFPF	9	Unmodified	_HVSNLEFPF_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2718240081	2	545.271824	1088.5291	1.118	0.00060961	5.1272	0.0027957	6.2452	0.0034053	545.2743422603409	26.963	0.19312	26.952	26.904	27.097	-0.010645	1266	94	0.85786515	0.05707693	0.8563457	347.95807	0	23.15094						229	9	2	NaN	NaN	NaN	0.41766	1	12014	12014		13.003	0.41496	1	23424			9634	1843	5593	5707	7602	7602					-0.011628300738266262
HVTGTEQV	8	Unmodified	_HVTGTEQV_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.71942429685004	2	435.719424	869.424296	1.8056	0.00078675	-4.2762	-0.0018632	-2.4706	-0.0010765	435.71789770332947	19.058	0.24028	19.044	18.972	19.212	-0.014059	1401	112	0.77473325	0.068493724	0.7732138	315.22684	0	27.869019						859	11	4	NaN	NaN	NaN	0.57691	1	5514	5514		26.732	1.7706	1	444160	+		9635	9454	5594	5708	7603	7603					-0.015639515503721668
HVTIENVFI	9	Unmodified	_HVTIENVFI_					0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	1.9548	0.0010484	-10.876	-0.005833	-8.9216	-0.0047846	536.2897156994969	23.682	0.096415	23.682	23.634	23.73	0	1221	70	0.885486	0.042301655	0.885486	359.2367	0	17.16153						128	5	3	NaN	NaN	NaN	0.46215	1	11588	11588		11.17	1.5587	1	18569	+		9636	10715	5595	5709	7604	7604					0.04358029477339187
HVTIENVFI	9	Unmodified						0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.295299	1070.57605	1.9548	0.0010484	-10.876	-0.005833	-8.9216	-0.0047846	536.2897156994969	23.682	0.096415	23.682	23.634	23.73	0	1221	70	0.885486	0.042301655	0.885486	359.2367		17.16153	-0.017428	0.00045574	0.00075972	NaN	11.17	128	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18569	+		9637	10715	5595	5709							0.04358029477339187
HVTIENVFI	9	Unmodified						0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.295299	1070.57605	1.3959	0.0007486	-11.792	-0.0063239	-10.396	-0.0055753	536.2884878233907	23.73	0.096338	23.717	23.669	23.765	-0.013048	1221	124	0.885486	0.0754807	0.88396657	359.2367		30.6221	0.017428	-0.00052613	-0.00075972	NaN	11.17	204	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26845	+		9638	10715	5595	5709							0.04358029477339187
HVTQEDFEM	9	Unmodified	_HVTQEDFEM_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2398635652	2	568.239864	1134.46517	2.5729	0.001462	-2.3849	-0.0013552	0.18791	0.00010678	568.2384365437008	18.628	0.28797	18.628	18.556	18.844	0	1260	67	0.8615505	0.040521502	0.8615505	349.276	0	16.427582						372	13	3	NaN	NaN	NaN	0.030696	1	14242	14242		58.2	32.085	1	101220			9639	1003	5596	5710	7605	7605					-0.09667978293077795
HVTQEDFEM	9	Unmodified	_HVTQEDFEM_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2398635652	2	568.239864	1134.46517	1.7789	0.0010109	-1.1327	-0.00064363	0.64625	0.00036723	568.239527665282	18.674	0.31197	18.66	18.54	18.852	-0.014059	1260	67	0.8615505	0.040525913	0.8600311	349.276	0	16.429352						463	14	5	NaN	NaN	NaN	0.013696	1	13787	13787		81.699	55.584	1	105260			9640	1003	5596	5710	7606	7606					-0.09667978293077795
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(150)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.23732087625	2	576.237321	1150.46009	1.72	0.00099111	-2.079	-0.001198	-0.35905	-0.0002069	576.2361793307557	14.741	0.28822	14.741	14.693	14.981	0	1254	64	0.8652351	0.038694263	0.8652351	350.71118	0	15.684174						458	13	3	NaN	NaN	NaN	7.355E-12	1	14815	14815		146.99	104.67	1	161450			9641	1003	5596	5711	7607	7607		110			-0.10912282155686626
HVTQEDFEM	9	Oxidation (M)	_HVTQEDFEM(Oxidation (M))_		HVTQEDFEM(1)		HVTQEDFEM(67)	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.23732087625	2	576.237321	1150.46009	1.314	0.00075719	-1.3466	-0.00077594	-0.032538	-1.8749E-05	576.2367732216776	14.74	0.48027	14.728	14.632	15.112	-0.011737	1254	58	0.8652351	0.035001516	0.86371565	350.71118	0	14.187378						620	21	5	NaN	NaN	NaN	0.024221	1	14308	14308		66.656	36.046	1	171430			9642	1003	5596	5711	7608	7608		110			-0.10912282155686626
HVTQSSVE	8	Unmodified	_HVTQSSVE_					0	0	0		VCAN|p.E738Q|1|0.09|ENSG00000038427|chr5:83520518-83520518|G/C|missense_variant	VCAN|p.E738Q|1|0.09|ENSG00000038427|chr5:83520518-83520518|G/C|missense_variant	VCAN|p.E738Q|1|0.09|ENSG00000038427|chr5:83520518-83520518|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.7168816079	2	443.716882	885.41921	1.5676	0.00069556	-4.61	-0.0020455	-3.0424	-0.00135	443.7151252024324	15.63	0.21605	15.63	15.606	15.822	0	1416	115	0.76547134	0.070364	0.76547134	311.37088	0	28.621948						740	10	4	NaN	NaN	NaN	0.80071	1	5875	5875		9.1232	0	1	275740			9643	14020	5597	5712	7609	7609					-0.028082554129923665
HVTSDAVEL	9	Unmodified	_HVTSDAVEL_					0	0	0		ENSG00000166012|ENST00000448108|TAF1D;ENST00000529508.1_1_11:93472401-93472473:-|nuORF;ENST00000532235.1_1_11:93470365-93472473:-|nuORF	ENSG00000166012|ENST00000448108|TAF1D	ENSG00000166012|ENST00000448108|TAF1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7456390473499	2	485.745639	969.476725	1.9128	0.00092914	-5.4342	-0.0026396	-3.5214	-0.0017105	485.7422005801095	17.522	0.11999	17.508	17.46	17.58	-0.013567	1350	55	0.80618626	0.033265352	0.8046668	327.49808	0	13.513428						152	6	3	NaN	NaN	NaN	0.36492	1	7437	7437		15.175	0	1	15288			9644	4442	5598	5713	7610	7610					-0.00923413207442536
HVVGICVLF	9	Unmodified	_HVVGICVLF_					0	0	0		ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.77823065445	2	493.778231	985.541908	1.6364	0.00080803	4.2963	0.0021214	5.9327	0.0029294	493.78073405929575	26.239	0.12063	26.228	26.204	26.324	-0.011137	1314	46	0.8283535	0.027695596	0.8268341	336.42636	0	11.2482605						79	6	2	NaN	NaN	NaN	0.58547	1	7904	7904		6.0903	1.6772	1	5397.4			9645	6342	5599	5714	7611	7611					0.04855909784726009
HVVGICVLF	9	Unmodified						0	0	0		ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	493.778231	985.541908	2.133	0.0010532	3.3038	0.0016313	5.4368	0.0026846	493.7794895209862	26.215	0.072378	26.215	26.191	26.263	0	1320	40	0.824661	0.02400285	0.824661	334.92667		9.748505	-0.0063927	-0.0005344	-0.0010866	NaN	6.0903	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5863.1			9646	6342	5599	5714							0.04855909784726009
HVVPNEVVVQR	11	Unmodified	_HVVPNEVVVQR_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14;ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3620359989001	2	638.362036	1274.70952	1.7995	0.0011487	-1.8769	-0.0011981	-0.0774	-4.9409E-05	638.3614716428448	15.438	0.072117	15.438	15.414	15.486	0	1125	31	0.9442611	0.018335521	0.9442611	382.30106	0	7.423462						59	4	2	NaN	NaN	NaN	0.26275	1	18322	18322		26.96	15.221	1	5880.6		+	9647	3621	5600	5715	7612	7612					0.08315268583032775
HVVPNEVVVQR	11	Unmodified	_HVVPNEVVVQR_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14;ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.3620359989001	2	638.362036	1274.70952	2.3133	0.0014767	0.022163	1.4148E-05	2.3354	0.0014909	638.3616158251305	15.532	0.071965	15.52	15.496	15.568	-0.012202	1128	34	0.9424274	0.020170152	0.94090796	381.5587	0	8.166229						66	4	2	NaN	NaN	NaN	0.12578	1	17507	17507		37.231	21.409	1	6223.1		+	9648	3621	5600	5715	7613	7613					0.08315268583032775
HVVQNEKS	8	Unmodified	_HVVQNEKS_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4846703301001	1	940.48467	939.477394	1.5297	0.0014387	-8.1675	-0.0076814	-6.6377	-0.0062427	940.476819937935	29.714	0.14475	29.707	29.659	29.803	-0.0070648	171	49	1.5174994	0.028358936	1.51598	308.37027	0	5.762787						136	7	3	NaN	NaN	NaN	0.78967	1	6670	6670		10.605	0.5534	1	11387			9649	2073	5601	5716	7614	7614					0.005234262322915129
HVVSAAGG	8	Unmodified	_HVVSAAGG_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3627642804001	1	697.362764	696.355488	0.80175	0.00055911	-9.9475	-0.006937	-9.1457	-0.0063779	697.3552057134286	29.135	0.1207	29.127	29.103	29.224	-0.0077229	624	58	1.247731	0.034231067	1.2462115	254.82597	0	6.9910736						143	6	2	NaN	NaN	NaN	0.81807	1	3099	3099		6.794	0.70367	1	11075	+		9650	11434	5602	5717	7615	7615					-0.004835710594193188
HVVSAAGG	8	Unmodified						0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	697.362764	696.355488	0.80175	0.00055911	-9.9475	-0.006937	-9.1457	-0.0063779	697.3552057134286	29.135	0.1207	29.127	29.103	29.224	-0.0077229	624	58	1.247731	0.034231067	1.2462115	254.82597		6.9910736	-0.0042575	0.00049571	0.00014081	NaN	6.794	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11075	+		9651	11434	5602	5717							-0.004835710594193188
HVYPVFYGL	9	Unmodified	_HVYPVFYGL_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5669433965	1	1094.56694	1093.55967	0.94105	0.00103	7.976	0.0087303	8.9171	0.0097603	1094.577049760663	33.358	0.096508	33.355	33.307	33.403	-0.0024796	90	61	1.5652816	0.035347342	1.5637622	317.43176	0	7.168274						114	5	2	NaN	NaN	NaN	0.36886	1	12238	12238		15.013	0.97131	1	12546	+		9652	9957	5603	5718	7616	7616					0.016629483112183152
HWDPQEVTL	9	Unmodified	_HWDPQEVTL_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.7721881488501	2	562.772188	1123.52982	2.0295	0.0011421	-3.4503	-0.0019417	-1.4208	-0.00079958	562.7711743377987	22.814	0.096432	22.814	22.766	22.863	0	1275	91	0.85233563	0.055250645	0.85233563	345.58063	0	22.401428						174	5	2	NaN	NaN	NaN	0.13999	1	13816	13816		30.035	19.675	1	26880			9653	3201	5604	5719	7617	7617					-0.027000354247547875
HWDPQEVTL	9	Unmodified	_HWDPQEVTL_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.7721881488501	2	562.772188	1123.52982	1.4022	0.00078909	-1.1039	-0.00062124	0.29827	0.00016786	562.7712608692354	22.838	0.1446	22.824	22.776	22.921	-0.01354	1275	55	0.85233563	0.03317547	0.8508162	345.58063	0	13.45105						136	7	2	NaN	NaN	NaN	0.070055	1	13395	13395		40.154	15.592	1	19213			9654	3201	5604	5719	7618	7618					-0.027000354247547875
HWDPQEVTL	9	Unmodified						0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.772188	1123.52982	1.6355	0.00092039	-6.4801	-0.0036468	-4.8447	-0.0027265	562.7663912291619	23.079	0.072191	23.065	23.041	23.114	-0.013294	1236	82	0.876284	0.049701393	0.8747646	355.29056		20.15149	0.12559	-0.0024059	0.011214	NaN	30.035	106	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12279			9655	3201	5604	5719							-0.027000354247547875
HWEYIQQI	8	Unmodified	_HWEYIQQI_					0	0	0			REV__ENST00000471370.5_1_12:58007804-58007903:+|nuORF	REV__ENST00000471370.5_1_12:58007804-58007903:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.77727352675	2	558.777274	1115.53999	1.3289	0.00074257	2.1566	0.001205	3.4855	0.0019476	558.778345405524	21.224	0.16854	21.21	21.114	21.282	-0.014004	1236	64	0.876284	0.038656652	0.8747646	355.32135	0	15.674744						340	8	4	NaN	NaN	NaN	0.202	1	13105	13105		49.833	8.3728	1	75942	+		9656	11340	5605	5720	7619	7619					-0.013154276995237524
HWLKKTEEE	9	Unmodified	_HWLKKTEEE_					0	0	0		ENSG00000166118|ENST00000299140|SPATA19	ENSG00000166118|ENST00000299140|SPATA19	ENSG00000166118|ENST00000299140|SPATA19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3063951069499	2	600.306395	1198.59824	1.8111	0.0010872	-4.2066	-0.0025252	-2.3955	-0.001438	600.3037273870599	19.78	0.19225	19.78	19.732	19.924	0	1188	103	0.90571284	0.062529504	0.90571284	366.9436	0	25.333405						521	9	3	NaN	NaN	NaN	0.18779	1	16422	16422		26.115	1.1539	1	146990			9657	4449	5606	5721	7620	7620					0.0068820915507785685
HWSLSSGSSF	10	Unmodified	_HWSLSSGSSF_					0	0	0			REV__ENST00000562621.1_1_15:73048204-73048867:-|nuORF	REV__ENST00000562621.1_1_15:73048204-73048867:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7487130525501	2	547.748713	1093.48287	0.89505	0.00049026	7.4309	0.0040703	8.326	0.0045605	547.7527432441303	31.694	0.21722	31.694	31.621	31.839	0	1302	88	0.8357362	0.0534696	0.8357362	338.96317	0	21.686554						376	10	3	NaN	NaN	NaN	0.33935	1	12525	12525		26.115	4.3439	1	69606	+		9658	12790	5607	5722	7621	7621					-0.060128949759018724
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.76670884045	2	546.766709	1091.51886	1.4619	0.00079934	-1.2162	-0.00066496	0.24577	0.00013438	546.7656006231333	20.237	0.26439	20.237	20.189	20.453	0	1218	61	0.8873258	0.036801934	0.8873258	359.8953	0	14.926697						303	12	4	NaN	NaN	NaN	0.015198	1	12459	12459		78.076	58.912	1	54288			9659	2733	5608	5723	7622	7622					-0.023233930084188614
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENST00000566346.2_1_16:33401403-33412789:+|nuORF;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	ENST00000566346.2_1_16:33401403-33412789:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.76670884045	2	546.766709	1091.51886	1.3345	0.00072966	-1.7203	-0.00094062	-0.38582	-0.00021095	546.7655805493141	20.429	0.2889	20.415	20.319	20.608	-0.014141	1221	67	0.885486	0.040495276	0.88396657	359.14908	0	16.424683						318	13	4	NaN	NaN	NaN	0.0029866	1	12145	12145		108.05	85.92	1	49406			9660	2733	5608	5723	7623	7623					-0.023233930084188614
HYADVLGLLL	10	Unmodified	_HYADVLGLLL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.3187742007001	2	557.318774	1112.623	0.77963	0.0004345	-5.4453	-0.0030347	-4.6656	-0.0026002	557.3155640663808	33.311	0.19307	33.311	33.262	33.456	0	1197	49	0.9001988	0.029412925	0.9001988	365.0302	0	11.926941						231	9	4	NaN	NaN	NaN	0.21269	1	13390	13390		34.439	18.976	1	48814			9661	782	5609	5724	7624	7624					0.07118889028470221
HYADVLGLLL	10	Unmodified	_HYADVLGLLL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3187742007001	2	557.318774	1112.623	0.69041	0.00038478	-4.6449	-0.0025887	-3.9545	-0.0022039	557.3161887561663	33.358	0.14478	33.355	33.307	33.452	-0.0024796	1197	70	0.9001988	0.042287946	0.8986794	365.03018	0	17.147736						210	7	3	NaN	NaN	NaN	0.039846	1	13012	13012		55.494	21.055	1	39707			9662	782	5609	5724	7625	7625					0.07118889028470221
HYAHLIKTF	9	Unmodified	_HYAHLIKTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000495574.1_1_10:129046289-129055694:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.2099478352667	3	377.209948	1128.60801	1.6995	0.00064107	-3.0993	-0.0011691	-1.3998	-0.00052801	377.20876670903317	16.877	0.0959	16.877	16.806	16.901	0	1419	34	0.76361835	0.020385087	0.76361835	464.3848	0	12.396942						134	5	4	NaN	NaN	NaN	0.3389	1	14038	14038		10.36	7.0992	1	13881			9663	3714	5610	5725	7626	7626					0.048854419511371816
HYAKLNFVI	9	Unmodified	_HYAKLNFVI_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.81365903305	2	552.813659	1103.61277	1.3682	0.00075635	-0.3284	-0.00018154	1.0398	0.00057481	552.8129745012783	22.405	0.19271	22.405	22.356	22.549	0	1176	43	0.9130621	0.02571404	0.9130621	370.2832	0	10.428101						180	9	4	NaN	NaN	NaN	0.14301	1	13006	13006		29.598	15.173	1	24053			9664	5674	5611	5726	7627	7627					0.06510326093894037
HYAKLNFVI	9	Unmodified						0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.813659	1103.61277	1.3071	0.00072261	-1.7367	-0.00096007	-0.42955	-0.00023746	552.8126939661814	22.621	0.14472	22.607	22.583	22.728	-0.01354	1167	43	0.91857195	0.025708497	0.9170525	372.5177		10.425842	0.10136	-0.0010082	0.0019952	NaN	29.598	120	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13734			9665	5674	5611	5726							0.06510326093894037
HYALNTWLF	9	Unmodified	_HYALNTWLF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7954662799001	2	582.795466	1163.57638	2.2525	0.0013127	0.64022	0.00037312	2.8927	0.0016859	582.7957653192545	29.932	0.26552	29.932	29.836	30.101	0	1194	58	0.902037	0.034933507	0.902037	365.5795	0	14.157928						477	12	5	NaN	NaN	NaN	0.030391	1	15268	15268		58.599	20.468	1	97412			9666	4751	5612	5727	7628	7628					0.0011344919719249447
HYALNTWLF	9	Unmodified	_HYALNTWLF_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7954662799001	2	582.795466	1163.57638	1.3213	0.00077005	0.7752	0.00045178	2.0965	0.0012218	582.7956744090333	29.955	0.24131	29.949	29.876	30.118	-0.0064106	1191	49	0.90387505	0.029412925	0.9023556	366.32443	0	11.920532						431	11	5	NaN	NaN	NaN	0.043119	1	14742	14742		49.833	29.32	1	82551			9667	4751	5612	5727	7629	7629					0.0011344919719249447
HYATLYFVF	9	Unmodified	_HYATLYFVF_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7923922747001	2	580.792392	1159.57023	1.6	0.00092924	0.070901	4.1179E-05	1.6709	0.00097042	580.7917864930293	30.68	0.31374	30.68	30.584	30.897	0	1191	67	0.90387505	0.040438354	0.90387505	366.33923	0	16.389618						476	14	4	NaN	NaN	NaN	0.042649	1	15124	15124		50.033	26.698	1	149970			9668	3970	5613	5728	7630	7630					-0.003170690343267779
HYATLYFVF	9	Unmodified	_HYATLYFVF_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7923922747001	2	580.792392	1159.57023	0.6719	0.00039023	-0.38042	-0.00022095	0.29147	0.00016928	581.2953713961829	31.693	0.19311	31.688	31.616	31.809	-0.0044174	1188	61	0.90571284	0.03675419	0.9041934	367.0841	0	14.896454						259	9	3	NaN	NaN	NaN	0.45297	1	14618	14618		11.548	0.94349	1	35645			9669	3970	5613	5728	7631	7631					-0.003170690343267779
HYATLYFVF	9	Unmodified	_HYATLYFVF_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7923922747001	2	580.792392	1159.57023	1.4757	0.00085705	-0.12139	-7.0504E-05	1.3543	0.00078655	580.7909322006468	30.727	0.28956	30.722	30.649	30.939	-0.0057545	1188	67	0.90571284	0.040442765	0.9041934	367.0841	0	16.391388						554	13	6	NaN	NaN	NaN	0.020004	1	14619	14619		71.993	45.878	1	159740			9670	3970	5613	5728	7632	7632					-0.003170690343267779
HYAYSFKYL	9	Unmodified	_HYAYSFKYL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.2952991044001	2	596.295299	1190.57605	1.1693	0.00069724	-1.8663	-0.0011129	-0.69702	-0.00041563	596.2941530179543	21.031	0.19256	21.031	20.983	21.175	0	1173	55	0.91489893	0.033053815	0.91489893	370.6937	0	13.392548						274	9	3	NaN	NaN	NaN	0.0042638	1	16163	16163		104.2	72.523	1	54352			9671	1712	5614	5729	7633	7633					-0.01161970522662159
HYAYSFKYL	9	Unmodified	_HYAYSFKYL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2952991044001	2	596.295299	1190.57605	0.88585	0.00052823	-1.7152	-0.0010228	-0.82932	-0.00049452	596.294308225542	21.2	0.24068	21.186	21.089	21.33	-0.014004	1176	55	0.9130621	0.03306091	0.91154265	369.94946	0	13.395447						284	11	3	NaN	NaN	NaN	0.017076	1	15552	15552		75.698	47.91	1	53380			9672	1712	5614	5729	7634	7634					-0.01161970522662159
HYDYIDVEM	9	Unmodified	_HYDYIDVEM_					0	0	0		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.75006411075	2	592.750064	1183.48558	1.4469	0.00085764	0.22317	0.00013228	1.6701	0.00098993	593.2511895247167	23.827	0.096323	23.827	23.803	23.899	0	1212	85	0.8910048	0.051472604	0.8910048	361.03717	0	20.856812						194	5	3	NaN	NaN	NaN	0.31737	1	15941	15941		17.799	10.815	1	31052			9673	5634	5615	5730	7635	7635					-0.09882807633266566
HYDYIDVEM	9	Unmodified	_HYDYIDVEM_					0	0	0		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.75006411075	2	592.750064	1183.48558	1.2119	0.00071837	1.7933	0.001063	3.0052	0.0017813	592.7507302091377	23.85	0.096439	23.837	23.789	23.886	-0.013048	1212	70	0.8910048	0.042283356	0.88948536	361.03717	0	17.1333						159	5	3	NaN	NaN	NaN	0.16171	1	15334	15334		27.789	7.3402	1	29222			9674	5634	5615	5730	7636	7636					-0.09882807633266566
HYDYIDVEM	9	Oxidation (M)	_HYDYIDVEM(Oxidation (M))_		HYDYIDVEM(1)		HYDYIDVEM(87)	0	0	1		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.7475214218	2	600.747521	1199.48049	1.583	0.00095101	-1.1629	-0.00069858	0.42019	0.00025243	600.7464133127678	19.948	0.19237	19.948	19.9	20.093	0	1203	55	0.8965218	0.033100247	0.8965218	363.21686	0	13.410217						292	9	5	NaN	NaN	NaN	0.011942	1	16445	16445		87.021	50.786	1	53347			9675	5634	5615	5731	7637	7637		575			-0.11127111495875397
HYDYIDVEM	9	Oxidation (M)	_HYDYIDVEM(Oxidation (M))_		HYDYIDVEM(1)		HYDYIDVEM(50)	0	0	1		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.7475214218	2	600.747521	1199.48049	1.1262	0.00067656	0.068716	4.1281E-05	1.1949	0.00071785	600.7475179146126	19.948	0.19263	19.934	19.909	20.102	-0.014141	1206	58	0.894683	0.034937263	0.89316356	362.4719	0	14.1545105						244	9	4	NaN	NaN	NaN	0.043119	1	15795	15795		49.833	30.669	1	47585			9676	5634	5615	5731	7638	7638		575			-0.11127111495875397
HYFDPQYFEF	10	Unmodified	_HYFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.79840289935	2	696.798403	1391.58225	1.4269	0.00099427	-2.7831	-0.0019393	-1.3562	-0.00094499	696.7964882369167	28.967	0.24136	28.967	28.894	29.136	0	1080	67	0.9717421	0.04027295	0.9717421	393.0729	0	16.290558						574	11	5	NaN	NaN	NaN	0.26393	1	19994	19994		30.035	16.572	1	154930			9677	961	5616	5732	7639	7639					-0.09787497081833862
HYFDPQYFEF	10	Unmodified	_HYFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.79840289935	2	696.798403	1391.58225	1.5483	0.0010788	-1.4779	-0.0010298	0.070411	4.9062E-05	696.7975533438951	30.004	0.14486	30.004	29.956	30.101	0	1077	46	0.9735726	0.027457356	0.9735726	393.81332	0	11.106598						116	7	2	NaN	NaN	NaN	0.74854	1	19995	19995		4.7291	0.76056	1	8689.2			9678	961	5616	5732	7640	7640					-0.09787497081833862
HYFDPQYFEF	10	Unmodified	_HYFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.79840289935	2	696.798403	1391.58225	1.5044	0.0010483	1.4701	0.0010243	2.9745	0.0020726	697.3019409179238	29.884	0.072424	29.884	29.836	29.908	0	1077	55	0.9735726	0.032957673	0.9735726	393.81332	0	13.331482						65	4	2	NaN	NaN	NaN	0.77024	1	19996	19996		2.8895	0.29002	1	4656.3			9679	961	5616	5732	7641	7641					-0.09787497081833862
HYFDPQYFEF	10	Unmodified	_HYFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.79840289935	2	696.798403	1391.58225	0.99144	0.00069083	-2.0273	-0.0014126	-1.0359	-0.0007218	696.7964881914618	28.99	0.21719	28.982	28.91	29.127	-0.0077229	1080	70	0.9717421	0.042101264	0.97022265	393.0729	0	17.03012						512	10	5	NaN	NaN	NaN	0.0035208	1	19054	19054		80.901	55.1	1	138430			9680	961	5616	5732	7642	7642					-0.09787497081833862
HYFDPQYFEF	10	Unmodified						0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	696.798403	1391.58225	1.5625	0.0010888	-3.3109	-0.002307	-1.7483	-0.0012182	697.2979388092891	30.004	0.024132	29.997	29.973	29.997	-0.0064106	1077	34	0.9735726	0.020135403	0.9720532	393.81335		8.144836	-0.0036629	-0.0016398	-0.00075972	NaN	4.7291	37	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2789.3			9681	961	5616	5732							-0.09787497081833862
HYFNTPFQL	9	Unmodified	_HYFNTPFQL_					0	0	0		ENST00000548721.1_1_12:110974844-110983893:-|nuORF;ENSG00000196850|ENST00000354300|PPTC7	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.78509855885	2	583.785099	1165.55564	1.6502	0.00096336	-1.7998	-0.0010507	-0.14962	-8.7346E-05	583.7829088575096	26.891	0.2414	26.88	26.832	27.073	-0.010643	1206	97	0.894683	0.058844924	0.89316356	362.59186	0	23.848328						570	11	3	NaN	NaN	NaN	0.14787	1	14790	14790		28.896	0	1	274040			9682	5659	5617	5733	7643	7643					-0.020511411825054893
HYFQNTQGLIF	11	Unmodified	_HYFQNTQGLIF_					0	0	0		ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	ENST00000605447.1_1_9:136944076-136944538:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.34076924055	2	684.340769	1366.66699	2.1549	0.0014747	0.04079	2.7914E-05	2.1957	0.0015026	684.3399940483105	26.118	0.096565	26.107	26.059	26.156	-0.011137	1083	58	0.9699114	0.034790516	0.96839195	392.40274	0	14.075439						211	5	3	NaN	NaN	NaN	0.054678	1	18839	18839		48.65	26.8	1	47796			9683	303	5618	5734	7644	7644					-0.0016812654521345394
HYFRRSPSHH	10	Unmodified	_HYFRRSPSHH_					0	0	0			REV__nc|ENSG00000116539|Q9NR48|ASH1L	REV__nc|ENSG00000116539|Q9NR48|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.3263191946	2	662.326319	1322.63809	1.3443	0.0008904	-8.6686	-0.0057414	-7.3242	-0.004851	662.3204423002114	34.035	0.3137	34.035	33.914	34.228	0	1098	103	0.960755	0.062313914	0.960755	388.82785	0	25.219116						826	14	4	NaN	NaN	NaN	0.64158	1	19145	19145		12.049	1.6885	1	285370	+		9684	9219	5619	5735	7645	7645					-0.010328063309771096
HYGLKLLTT	9	Unmodified	_HYGLKLLTT_					0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.6040571842998	1	1045.60406	1044.59678	0.16242	0.00016983	-0.21958	-0.0002296	-0.057163	-5.977E-05	1045.6043916418605	47.466	0.11976	47.474	47.426	47.546	0.0074158	174	34	1.5157272	0.019497752	1.5142077	307.56192	0	3.9563599						80	6	2	NaN	NaN	NaN	0.67818	1	10209	10209		1.072	0	1	4968.3	+		9685	10281	5620	5736	7646	7646					0.07626619856978323
HYGLKLLTT	9	Unmodified						0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1045.60406	1044.59678	1.9708	0.0020606	-3.3125	-0.0034635	-1.3417	-0.0014029	1045.6004908320185	47.492	0.16777	47.492	47.42	47.588	0	183	40	1.510409	0.023045301	1.510409	306.4828		4.6762085	0.0089768	-0.0014132	-0.0018994	NaN	1.072	95	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5568.1	+		9686	10281	5620	5736							0.07626619856978323
HYGLKLLTT	9	Unmodified						0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1045.60406	1044.59678	0.16242	0.00016983	-0.21958	-0.0002296	-0.057163	-5.977E-05	1045.6043916418605	47.466	0.11976	47.474	47.426	47.546	0.0074158	174	34	1.5157272	0.019497752	1.5142077	307.56192		3.9563599	-0.0089768	0.0018208	0.0018994	NaN	1.072	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4968.3	+		9687	10281	5620	5736							0.07626619856978323
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7716568326	2	570.771657	1139.52876	1.8371	0.0010486	-0.003191	-1.8213E-06	1.8339	0.0010468	570.7718190996161	30.27	0.14478	30.27	30.222	30.366	0	1227	82	0.88180584	0.049669147	0.88180584	357.4685	0	20.13501						191	7	2	NaN	NaN	NaN	0.062836	1	14423	14423		41.46	13.671	1	50784			9688	600	5621	5737	7647	7647					-0.035422497936679065
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7716568326	2	570.771657	1139.52876	0.81276	0.0004639	-0.43679	-0.00024931	0.37597	0.00021459	570.771536584356	30.293	0.21714	30.287	30.19	30.407	-0.0064106	1221	79	0.885486	0.04782182	0.88396657	358.9604	0	19.386108						247	10	2	NaN	NaN	NaN	0.029744	1	13952	13952		59.445	33.33	1	53797			9689	600	5621	5737	7648	7648					-0.035422497936679065
HYGRFQEF	8	Unmodified	_HYGRFQEF_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.25396560595	2	542.253966	1082.49338	1.7713	0.00096049	-1.0889	-0.00059049	0.68234	0.00037	542.2533907650865	16.446	0.19177	16.446	16.398	16.59	0	1254	55	0.8652351	0.03316474	0.8652351	350.97186	0	13.45285						275	9	4	NaN	NaN	NaN	0.3434	1	12076	12076		39.459	14.498	1	37230			9690	5434	5622	5738	7649	7649					-0.04456867530825548
HYGRFQEF	8	Unmodified	_HYGRFQEF_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.25396560595	2	542.253966	1082.49338	1.7419	0.00094455	-0.45661	-0.0002476	1.2853	0.00069696	542.253902272587	16.658	0.16789	16.645	16.525	16.693	-0.013294	1254	46	0.8652351	0.027635753	0.86371565	350.97186	0	11.210114						178	8	3	NaN	NaN	NaN	0.12876	1	11762	11762		58.599	36.473	1	25485			9691	5434	5622	5738	7650	7650					-0.04456867530825548
HYHVEKLF	8	Unmodified	_HYHVEKLF_					0	0	0		ENSG00000178233|ENST00000451188|TMEM151B	ENSG00000178233|ENST00000451188|TMEM151B	ENSG00000178233|ENST00000451188|TMEM151B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.78235890465	2	536.782359	1071.55016	1.4617	0.0007846	-8.1092	-0.0043529	-6.6475	-0.0035683	536.7779751384645	32.707	0.096516	32.707	32.659	32.756	0	1239	91	0.87444305	0.055244684	0.87444305	354.7525	0	22.41217						144	5	2	NaN	NaN	NaN	0.84207	1	11629	11629		3.5732	1.1117	1	13394			9692	5106	5623	5739	7651	7651					0.01725180025687223
HYIDAGYLGF	10	Unmodified	_HYIDAGYLGF_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.27710635125	2	578.277106	1154.53966	2.0445	0.0011823	-0.05615	-3.247E-05	1.9883	0.0011498	578.2760506851153	26.674	0.21768	26.674	26.601	26.819	0	1188	88	0.90571284	0.053319573	0.90571284	367.1029	0	21.61145						658	10	7	NaN	NaN	NaN	0.00031687	1	14955	14955		96.245	63.793	1	255040			9693	1997	5624	5740	7652	7652					-0.03142847419394457
HYIDAGYLGF	10	Unmodified	_HYIDAGYLGF_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.27710635125	2	578.277106	1154.53966	1.519	0.00087838	-1.293	-0.00074772	0.22595	0.00013066	578.2759685794504	26.697	0.26545	26.687	26.542	26.808	-0.010645	1188	88	0.90571284	0.053319573	0.9041934	367.1029	0	21.61145						516	12	4	NaN	NaN	NaN	0.0076061	1	14464	14464		74.332	50.998	1	249830			9694	1997	5624	5740	7653	7653					-0.03142847419394457
HYIDDLVVI	9	Unmodified	_HYIDDLVVI_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289001	2	543.795132	1085.57571	1.1129	0.00060517	-1.2006	-0.00065286	-0.087696	-4.7689E-05	543.7953764645599	28.049	0.09651	28.04	28.016	28.112	-0.0089779	1245	73	0.87076044	0.04417187	0.869241	353.20056	0	17.917114						205	5	5	NaN	NaN	NaN	0.36492	1	11896	11896		15.175	5.1238	1	16346			9695	3053	5625	5741	7654	7654					0.03634609757477847
HYIDDLVVI	9	Unmodified						0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.795132	1085.57571	1.6202	0.00088104	-2.9708	-0.0016155	-1.3506	-0.00073444	543.7937559871552	28.026	0.072378	28.026	28.001	28.074	0	1248	70	0.8689189	0.042342782	0.8689189	352.45358		17.175201	-0.0072042	-0.001167	-0.00016107	NaN	15.175	106	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13025			9696	3053	5625	5741							0.03634609757477847
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.19781933316665	3	393.197819	1176.57163	1.3976	0.00054955	-2.0618	-0.00081068	-0.66412	-0.00026113	393.1969589327903	22.429	0.14449	22.429	22.38	22.525	0	1431	40	0.75620437	0.024101853	0.75620437	459.65018	0	14.650055						154	7	3	NaN	NaN	NaN	0.31766	1	15699	15699		15.463	10.446	1	21412			9697	4251	5626	5742	7655	7655					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2930907664501	2	589.293091	1176.57163	2.203	0.0012982	-1.7491	-0.0010307	0.45386	0.00026746	589.2924917215754	22.429	0.24092	22.429	22.308	22.549	0	1179	82	0.9112251	0.049620926	0.9112251	369.2555	0	20.10788						528	11	5	NaN	NaN	NaN	8.6905E-19	1	15700	15700		165.48	115.45	1	509490			9698	4251	5626	5742	7656	7656					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2930907664501	2	589.293091	1176.57163	1.0653	0.0006278	-3.6585	-0.0021559	-2.5931	-0.0015281	589.2911040830933	22.573	0.072401	22.559	22.487	22.559	-0.01354	1185	85	0.90755045	0.05146706	0.906031	367.76642	0	20.855988						177	4	4	NaN	NaN	NaN	0.012495	1	15129	15129		85.344	60.782	1	29900			9699	4251	5626	5742	7657	7657					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.19781933316665	3	393.197819	1176.57163	1.3371	0.00052574	-3.1389	-0.0012342	-1.8018	-0.00070845	393.19582235806047	22.693	0.14473	22.68	22.559	22.704	-0.01354	1428	40	0.7580582	0.02409923	0.75653875	460.777	0	14.648468						112	7	2	NaN	NaN	NaN	0.20577	1	15130	15130		16.858	9.8739	1	11767			9700	4251	5626	5742	7658	7658					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2930907664501	2	589.293091	1176.57163	1.7791	0.0010484	-1.3145	-0.00077464	0.46461	0.00027379	589.2923689629915	22.669	0.45804	22.655	22.583	23.041	-0.01354	1173	82	0.91489893	0.049610198	0.9133795	370.74423	0	20.103516						817	20	5	NaN	NaN	NaN	0.0012818	1	15131	15131		113.18	75.881	1	521090			9701	4251	5626	5742	7659	7659					-0.009594349455710471
HYILHNSFF	9	Unmodified						0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.293091	1176.57163	1.8336	0.0010806	-2.8188	-0.0016611	-0.98516	-0.00058055	589.2916180379275	22.573	0.21714	22.573	22.573	22.79	0	1170	61	0.91673553	0.036734402	0.91673553	371.4885		14.885895	-0.04119	-0.0014996	0.001678	NaN	113.18	234	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41207			9702	4251	5626	5742							-0.009594349455710471
HYINMPVQF	9	Unmodified	_HYINMPVQF_					0	0	0		ENST00000513183.1_1_18:13124610-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192	ENST00000513183.1_1_18:13124610-13124766:+|nuORF	ENST00000513183.1_1_18:13124610-13124766:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7815016249001	2	574.781502	1147.54845	2.0665	0.0011878	-1.5145	-0.00087053	0.55192	0.00031723	574.7806733479016	25.419	0.24127	25.419	25.322	25.564	0	1218	73	0.8873258	0.044162333	0.8873258	359.67615	0	17.901123						363	11	4	NaN	NaN	NaN	0.025843	1	14719	14719		64.55	19.385	1	83787			9703	1341	5627	5743	7660	7660					-0.01942197054540884
HYINMPVQF	9	Unmodified	_HYINMPVQF_					0	0	0		ENST00000513183.1_1_18:13124610-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192	ENST00000513183.1_1_18:13124610-13124766:+|nuORF	ENST00000513183.1_1_18:13124610-13124766:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7815016249001	2	574.781502	1147.54845	1.8211	0.0010467	-1.2724	-0.00073138	0.54862	0.00031534	574.7812079058106	25.443	0.21718	25.431	25.358	25.575	-0.012011	1218	82	0.8873258	0.049669147	0.8858064	359.67615	0	20.133331						427	10	4	NaN	NaN	NaN	0.025843	1	14228	14228		64.55	27.963	1	95446			9704	1341	5627	5743	7661	7661					-0.01942197054540884
HYIRKYNRF	9	Unmodified	_HYIRKYNRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.9035178142666	3	432.903518	1295.68872	1.0774	0.00046639	-2.1244	-0.00091965	-1.047	-0.00045326	433.237199600676	13.132	0.21617	13.132	13.06	13.276	0	1440	28	0.7506418	0.016691387	0.7506418	455.7834	0	10.134827						104	10	2	NaN	NaN	NaN	0.2345	1	18703	18703		23.118	15.53	1	7463.4			9705	3377	5628	5744	7662	7662					0.05270722994009702
HYIYIENQF	9	Unmodified	_HYIYIENQF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.79566324515	2	613.795663	1225.57677	1.3228	0.0008119	-0.83137	-0.00051029	0.49138	0.00030161	613.7943512843424	22.887	0.14471	22.887	22.838	22.983	0	1170	82	0.91673553	0.049556673	0.91673553	371.31628	0	20.07251						148	7	2	NaN	NaN	NaN	0.062836	1	17116	17116		41.46	25.043	1	24359			9706	843	5629	5745	7663	7663					-0.02699175873635795
HYIYIENQFF	10	Unmodified	_HYIYIENQFF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3298702032499	2	687.32987	1372.64519	1.9339	0.0013293	-1.8725	-0.001287	0.061478	4.2256E-05	687.3288094715414	27.495	0.362	27.495	27.398	27.76	0	1074	64	0.9754029	0.0384444	0.9754029	394.60724	0	15.553009						402	16	5	NaN	NaN	NaN	0.17937	1	19821	19821		37.302	16.789	1	85670			9707	843	5630	5746	7664	7664					-0.026229312937857685
HYIYIENQFF	10	Unmodified	_HYIYIENQFF_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3298702032499	2	687.32987	1372.64519	1.2988	0.0008927	-1.3637	-0.00093728	-0.064869	-4.4586E-05	687.3292046321728	27.542	0.28955	27.533	27.484	27.774	-0.0095501	1074	64	0.9754029	0.038440287	0.97388345	394.60724	0	15.551331						515	13	4	NaN	NaN	NaN	0.040041	1	18886	18886		55.413	10.78	1	92004			9708	843	5630	5746	7665	7665					-0.026229312937857685
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.3056668254501	2	583.305667	1164.59678	2.3075	0.001346	-1.9697	-0.001149	0.3378	0.00019704	583.3045946990663	20.405	0.3608	20.405	20.333	20.694	0	1164	163	0.9204082	0.09920448	0.9204082	373.02118	0	40.205414						1343	16	5	NaN	NaN	NaN	0.030696	1	15304	15304		58.2	20.069	1	821160			9709	1932	5631	5747	7666	7666					0.02106619856999714
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3056668254501	2	583.305667	1164.59678	2.031	0.0011847	-1.5354	-0.00089563	0.49559	0.00028908	583.3047977374688	20.598	0.31316	20.584	20.463	20.776	-0.014088	1164	160	0.9204082	0.09737265	0.91888875	373.02118	0	39.462982						1468	14	6	NaN	NaN	NaN	0.017558	1	14775	14775		75.089	46.193	1	773720			9710	1932	5631	5747	7667	7667					0.02106619856999714
HYLDQLNHI	9	Unmodified	_HYLDQLNHI_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7934549072	2	576.793455	1151.57236	1.8003	0.0010384	-6.7217	-0.003877	-4.9214	-0.0028386	576.7897948464358	19.972	0.096191	19.972	19.924	20.021	0	1179	82	0.9112251	0.04963696	0.9112251	369.3484	0	20.119446						113	5	2	NaN	NaN	NaN	0.054111	1	14861	14861		45.165	32.162	1	16155			9711	1184	5632	5748	7668	7668					0.002633597034673585
HYLDQLNHI	9	Unmodified	_HYLDQLNHI_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7934549072	2	576.793455	1151.57236	1.442	0.00083171	-3.4441	-0.0019865	-2.0022	-0.0011548	576.7916234267441	20.044	0.096294	20.03	19.982	20.078	-0.014141	1182	73	0.9093879	0.044124186	0.90786844	368.6037	0	17.884918						97	5	2	NaN	NaN	NaN	0.04743	1	14354	14354		48.002	25.876	1	11828			9712	1184	5632	5748	7669	7669					0.002633597034673585
HYLDTTTLI	9	Unmodified	_HYLDTTTLI_					0	0	0		ENSG00000099942|ENST00000354336|CRKL;nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	ENSG00000099942|ENST00000354336|CRKL;nc|ENSG00000167193|P46108-2|CRK	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.78476420785	2	538.784764	1075.55498	1.5328	0.00082583	-0.068826	-3.7082E-05	1.4639	0.00078875	538.7847612745059	24.14	0.24125	24.127	23.982	24.224	-0.012749	1221	85	0.885486	0.051544964	0.88396657	359.2155	0	20.910278						236	11	2	NaN	NaN	NaN	0.032417	1	11488	11488		55.947	11.645	1	163290			9713	1172;4534	5633	5749	7670	7670					0.02022019377795914
HYLHSARE	8	Unmodified	_HYLHSARE_					0	0	0		ENST00000296412.12_1_4:99993145-99993307:-|nuORF	ENST00000296412.12_1_4:99993145-99993307:-|nuORF	ENST00000296412.12_1_4:99993145-99993307:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.7515900925	2	506.75159	1011.48863	1.8569	0.00094099	0.14512	7.3538E-05	2.002	0.0010145	506.75159223707124	22.429	0.26508	22.429	22.38	22.645	0	1431	46	0.75620437	0.027809858	0.75620437	307.01535	0	11.29068						261	12	4	NaN	NaN	NaN	0.75682	1	9030	9030		15.013	2.425	1	43908			9714	6395	5634	5750	7671	7671					-0.016657516735790523
HYLLLPYLL	9	Unmodified	_HYLLLPYLL_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.8418851562501	2	572.841885	1143.66922	1.3988	0.00080128	-1.3569	-0.00077729	0.041882	2.3992E-05	572.8408634390034	34.3	0.14463	34.3	34.252	34.396	0	1158	49	0.92408	0.029374838	0.92408	374.5895	0	11.907532						210	7	4	NaN	NaN	NaN	0.10053	1	14597	14597		35.745	20.732	1	23872			9715	3006	5635	5751	7672	7672					0.10312953930565527
HYLLLPYLL	9	Unmodified	_HYLLLPYLL_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8418851562501	2	572.841885	1143.66922	0.87457	0.00050099	-2.0959	-0.0012006	-1.2213	-0.00069964	572.840585103716	34.419	0.16872	34.419	34.346	34.515	-0.00064468	1155	46	0.92591566	0.027537405	0.9243962	375.33362	0	11.16272						222	8	3	NaN	NaN	NaN	0.10053	1	14116	14116		35.745	23.157	1	20814			9716	3006	5635	5751	7673	7673					0.10312953930565527
HYLLYKYQM	9	Unmodified	_HYLLYKYQM_					0	0	0		ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.81808409645	2	629.818084	1257.62162	1.5068	0.00094904	3.436	0.0021641	4.9429	0.0031131	629.8208127660687	26.674	0.09655	26.674	26.65	26.746	0	1128	67	0.9424274	0.040355563	0.9424274	381.61423	0	16.341064						144	5	3	NaN	NaN	NaN	0.36492	1	17949	17949		15.175	4.5704	1	14656			9717	5084	5636	5752	7674	7674					0.003109316680365737
HYLNHWNHF	9	Unmodified	_HYLNHWNHF_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP;FOXK2-FN3KRP|1|fusion	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.1967013187	3	423.196701	1266.56827	1.6368	0.00069268	-0.83591	-0.00035375	0.80087	0.00033893	423.19659919059745	17.141	0.14405	17.141	17.069	17.213	0	1419	40	0.76361835	0.02408886	0.76361835	463.77487	0	14.630066						142	7	3	NaN	NaN	NaN	0.048656	1	18138	18138		47.482	29.512	1	14656			9718	3333	5637	5753	7675	7675					-0.054346849995909
HYLNHWNHF	9	Unmodified	_HYLNHWNHF_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP;FOXK2-FN3KRP|1|fusion	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.1967013187	3	423.196701	1266.56827	1.8968	0.00080274	-2.6624	-0.0011267	-0.76553	-0.00032397	423.195748020429	18.146	0.12001	18.132	18.036	18.156	-0.013948	1419	28	0.76361835	0.016676903	0.7620989	463.7749	0	10.12854						84	6	2	NaN	NaN	NaN	0.60736	1	17334	17334		5.1889	0.87873	1	7197			9719	3333	5637	5753	7676	7676					-0.054346849995909
HYLNLNLFF	9	Unmodified	_HYLNLNLFF_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8111163440999	2	590.811116	1179.60768	1.218	0.00071963	-3.6445	-0.0021532	-2.4265	-0.0014336	590.8099994896506	32.611	0.19308	32.611	32.563	32.756	0	1179	52	0.9112251	0.031232655	0.9112251	369.24448	0	12.656006						162	9	3	NaN	NaN	NaN	0.12945	1	15818	15818		31.561	20.391	1	16384			9720	270	5638	5754	7677	7677					0.025060222312504266
HYLNLNLFF	9	Unmodified	_HYLNLNLFF_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8111163440999	2	590.811116	1179.60768	0.82991	0.00049032	0.63437	0.00037479	1.4643	0.00086511	590.8117897635813	32.73	0.072395	32.727	32.679	32.751	-0.0031052	1173	49	0.91489893	0.029384315	0.9133795	370.73315	0	11.907043						88	4	2	NaN	NaN	NaN	0.47587	1	15236	15236		10.605	4.9108	1	9576.1			9721	270	5638	5754	7678	7678					0.025060222312504266
HYLNVAFDL	9	Unmodified	_HYLNVAFDL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2796490402001	2	546.279649	1090.54475	1.2189	0.00066585	-2.314	-0.0012641	-1.0951	-0.00059825	546.2790030910257	27.398	0.19312	27.398	27.35	27.543	0	1230	67	0.8799654	0.04051274	0.8799654	356.91394	0	16.431976						194	9	3	NaN	NaN	NaN	0.16171	1	12425	12425		27.789	8.6705	1	18896			9722	1399	5639	5755	7679	7679					0.003094564432331026
HYLNVAFDL	9	Unmodified						0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.279649	1090.54475	1.0902	0.00059556	-0.70233	-0.00038367	0.38788	0.00021189	546.2796028000964	27.446	0.16893	27.436	27.363	27.532	-0.010126	1227	67	0.88180584	0.04050839	0.8802864	357.6604		16.430206	0.018678	0.00096345	0.00016048	NaN	27.789	186	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18783			9723	1399	5639	5755							0.003094564432331026
HYLPYYYSI	9	Unmodified	_HYLPYYYSI_					0	0	0		ENST00000574380.5_1_16:3508085-3533604:+|nuORF;nc|ENSG00000122390|Q9H7X0-3|NAA60;ENST00000570551.5_1_16:3508085-3534852:+|nuORF;ENSG00000122390|ENST00000407558|NAA60;nc|ENSG00000122390|Q9H7X0-2|NAA60	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.7951319289	2	609.795132	1217.57571	1.4404	0.00087835	6.4115	0.0039097	7.8519	0.0047881	609.799277961364	25.274	0.21717	25.274	25.202	25.419	0	1167	136	0.91857195	0.08265692	0.91857195	372.0873	0	33.481964						362	10	2	NaN	NaN	NaN	0.29422	1	16929	16929		19.285	9.6731	1	42618			9724	2320	5640	5756	7680	7680					-0.0243739024253955
HYLSKTYWW	9	Unmodified	_HYLSKTYWW_					0	0	0		ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3140231738001	2	642.314023	1282.61349	2.2351	0.0014357	1.4441	0.00092758	3.6793	0.0023632	642.3152779088963	23.223	0.1929	23.21	23.065	23.258	-0.013294	1146	55	0.93142134	0.033032417	0.9299019	377.07776	0	13.372894						160	9	2	NaN	NaN	NaN	0.61413	1	17646	17646		4.9097	0.18066	1	22171			9725	704	5641	5757	7681	7681					-0.01650879257044835
HYLSKTYWW	9	Unmodified	_HYLSKTYWW_					0	0	0		ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3140231738001	2	642.314023	1282.61349	2.3756	0.0015259	4.9997	0.0032113	7.3752	0.0047372	642.3172382395632	23.368	0.12066	23.355	23.307	23.427	-0.013294	1146	61	0.93142134	0.036694765	0.9299019	377.07776	0	14.85556						124	6	2	NaN	NaN	NaN	0.030696	1	17647	17647		58.2	44.158	1	17833			9726	704	5641	5757	7682	7682					-0.01650879257044835
HYLSKTYWW	9	Unmodified						0	0	0		ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	642.314023	1282.61349	2.1349	0.0013712	9.1787	0.0058956	11.314	0.0072668	642.3207959507567	23.32	0.12054	23.32	23.296	23.417	0	1140	43	0.93509084	0.025683582	0.93509084	378.5633		10.397766	-0.017247	0.0028704	0.0025945	NaN	58.2	120	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9683.4			9727	704	5641	5757							-0.01650879257044835
HYLYFFRL	8	Unmodified	_HYLYFFRL_					0	0	0			REV__ENSG00000182087|ENST00000356663|TMEM259	REV__ENSG00000182087|ENST00000356663|TMEM259	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.8083766899001	2	579.808377	1157.6022	1.2822	0.00074345	-0.37248	-0.00021597	0.90976	0.00052749	579.8080759403975	22.042	0.1445	22.029	21.884	22.029	-0.013731	1164	73	0.9204082	0.04408127	0.91888875	373.04758	0	17.866455						225	7	3	NaN	NaN	NaN	0.81756	1	14573	14573		6.0903	1.1806	1	32225	+		9728	10856	5642	5758	7683	7683					0.02970343439460521
HYMFINGRAR	10	Unmodified	_HYMFINGRAR_					0	0	0			REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.8220237689001	2	632.822024	1263.62949	1.3376	0.00084646	-6.1174	-0.0038712	-4.7798	-0.0030248	632.8180819391634	20.573	0.12041	20.573	20.549	20.67	0	1161	52	0.9222442	0.03121245	0.9222442	373.42224	0	12.638092						104	6	2	NaN	NaN	NaN	0.77884	1	18080	18080		0.79988	0.10873	1	14127	+		9729	13372	5643	5759	7684	7684					0.008225037081956543
HYMFINGRAR	10	Unmodified						0	0	0			REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.822024	1263.62949	1.3376	0.00084646	-6.1174	-0.0038712	-4.7798	-0.0030248	632.8180819391634	20.573	0.12041	20.573	20.549	20.67	0	1161	52	0.9222442	0.03121245	0.9222442	373.42224		12.638092	-0.0051199	0.00067865	-0.00015819	NaN	0.79988	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14127	+		9730	13372	5643	5759							0.008225037081956543
HYMFINGRAR	10	Unmodified						0	0	0			REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	REV__TG|p.V2608I|1|0.14|ENSG00000042832|chr8:133116676-133116676|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.822024	1263.62949	1.2413	0.00078554	-7.3457	-0.0046486	-6.1044	-0.003863	632.8178583387019	20.598	0.14463	20.584	20.535	20.68	-0.014088	1158	46	0.92408	0.027534425	0.9225606	374.1656		11.148865	0.0051199	-0.00087596	0.00015819	NaN	0.79988	131	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13241	+		9731	13372	5643	5759							0.008225037081956543
HYMPPPYASL	10	Unmodified	_HYMPPPYASL_					0	0	0		RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant;ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.2813344494	2	588.281334	1174.54812	1.0128	0.00059583	-1.9775	-0.0011633	-0.96468	-0.0005675	588.7816184210292	22.284	0.04826	22.27	22.246	22.294	-0.013731	1206	97	0.894683	0.05888307	0.89316356	362.5594	0	23.861664						121	3	2	NaN	NaN	NaN	0.22131	1	15070	15070		33.698	6.4021	1	29801			9732	3956	5644	5760	7685	7685					-0.03217616774418275
HYMPPPYASL	10	Oxidation (M)	_HYM(Oxidation (M))PPPYASL_		HYM(1)PPPYASL		HYM(42)PPPYASL	0	0	1		RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant;ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.27879176045	2	596.278792	1190.54303	0.9264	0.00055239	3.3075	0.0019722	4.2339	0.0025246	596.2827360483317	20.525	0.24076	20.511	20.391	20.632	-0.014141	1215	139	0.8891654	0.08456224	0.88764596	360.2672	0	34.26245						446	11	3	NaN	NaN	NaN	0.13037	1	15549	15549		41.785	21.336	1	61374			9733	3956	5644	5761	7686	7686		427			-0.04461920637049843
HYMSINDSF	9	Unmodified	_HYMSINDSF_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.237123911	2	557.237124	1112.45969	1.3794	0.00076863	-1.4477	-0.00080669	-0.068306	-3.8063E-05	557.2367753491257	21.272	0.21661	21.272	21.2	21.416	0	1251	91	0.8670771	0.055298448	0.8670771	351.59998	0	22.423553						323	10	4	NaN	NaN	NaN	0.021105	1	13358	13358		70.6	44.485	1	61819			9734	66	5645	5762	7687	7687					-0.09203657084890438
HYMSINDSF	9	Unmodified	_HYMSINDSF_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.237123911	2	557.237124	1112.45969	1.3461	0.00075011	-2.2555	-0.0012568	-0.90933	-0.00050671	557.2358009085107	21.296	0.16831	21.282	21.234	21.402	-0.014006	1251	52	0.8670771	0.031317174	0.8655577	351.59998	0	12.699127						254	8	4	NaN	NaN	NaN	0.10956	1	12980	12980		34.439	20.014	1	58012			9735	66	5645	5762	7688	7688					-0.09203657084890438
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(61)SINDSF	0	0	1		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.23458122205	2	565.234581	1128.45461	2.5191	0.0014239	-2.6482	-0.0014968	-0.12907	-7.2955E-05	565.2333634585885	18.197	0.26385	18.197	18.101	18.364	0	1248	76	0.8689189	0.04605961	0.8689189	352.2857	0	18.67395						367	12	4	NaN	NaN	NaN	0.028349	1	14013	14013		61.271	44.687	1	63880			9736	66	5645	5763	7689	7689		5			-0.10447960947499269
HYMTVDDLL	9	Unmodified	_HYMTVDDLL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.76297452075	2	553.762975	1105.5114	1.5305	0.00084756	2.1327	0.001181	3.6632	0.0020286	553.7648663596048	26.408	0.12066	26.408	26.36	26.481	0	1218	49	0.8873258	0.029441535	0.8873258	359.83847	0	11.939453						112	6	3	NaN	NaN	NaN	0.27442	1	13075	13075		20.555	9.007	1	8314.5			9737	1780	5646	5764	7690	7690					-0.03713913390970447
HYNSDLNNLLF	11	Unmodified	_HYNSDLNNLLF_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.32785883055	2	675.327859	1348.64116	1.1038	0.00074543	-2.8364	-0.0019155	-1.7326	-0.0011701	675.3268419865684	27.181	0.14478	27.181	27.157	27.302	0	1098	58	0.960755	0.03479433	0.960755	388.7503	0	14.078796						272	7	5	NaN	NaN	NaN	0.3345	1	19525	19525		24.393	15.431	1	32460			9738	4309	5647	5765	7691	7691					-0.019210207874948537
HYNSDLNNLLF	11	Unmodified	_HYNSDLNNLLF_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.32785883055	2	675.327859	1348.64116	0.76314	0.00051537	-3.255	-0.0021982	-2.4919	-0.0016829	675.3266682645251	27.228	0.19304	27.218	27.17	27.363	-0.010124	1095	58	0.9625867	0.034790516	0.96106726	389.49146	0	14.077301						304	9	4	NaN	NaN	NaN	0.17366	1	18651	18651		32.778	19.315	1	33667			9739	4309	5647	5765	7692	7692					-0.019210207874948537
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8220153814001	2	629.822015	1257.62948	1.3251	0.00083455	0.65129	0.0004102	1.9763	0.0012447	629.8223631203326	26.891	0.12066	26.891	26.843	26.964	0	1119	49	0.9479278	0.029324174	0.9479278	383.84146	0	11.8741455						163	6	3	NaN	NaN	NaN	0.078597	1	17951	17951		38.918	8.3077	1	26823			9740	4969	5648	5766	7693	7693					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8220153814001	2	629.822015	1257.62948	2.6156	0.0016474	0.3877	0.00024418	3.0033	0.0018915	629.8227260934517	26.119	0.50684	26.119	25.998	26.505	0	1119	115	0.9479278	0.06967497	0.9479278	383.84146	0	28.213287						898	22	3	NaN	NaN	NaN	0.00011853	1	17953	17953		121.78	66.191	1	625650			9741	4969	5648	5766	7694	7694					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8220153814001	2	629.822015	1257.62948	0.99717	0.00062804	-2.4669	-0.0015537	-1.4698	-0.00092569	630.3221876898473	26.794	0.19308	26.783	26.783	26.976	-0.010645	1107	58	0.9552588	0.0348168	0.9537394	386.81	0	14.098267						181	9	4	NaN	NaN	NaN	0.078597	1	17179	17179		38.918	18.362	1	30009			9742	4969	5648	5766	7695	7695					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8220153814001	2	629.822015	1257.62948	1.1684	0.00073587	-1.6942	-0.001067	-0.52579	-0.00033116	629.819430909907	27.084	0.048275	27.074	27.025	27.074	-0.010124	1119	40	0.9479278	0.023816884	0.94640833	383.84146	0	9.644104						54	3	2	NaN	NaN	NaN	0.078597	1	17180	17180		38.918	25.455	1	7774.8			9743	4969	5648	5766	7696	7696					0.0109682697984681
HYNWLIYHL	9	Unmodified	_HYNWLIYHL_					0	0	0		ENST00000477549.1_1_3:153994520-153995479:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	ENST00000477549.1_1_3:153994520-153995479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8220153814001	2	629.822015	1257.62948	1.8156	0.0011435	-2.0833	-0.0013121	-0.26775	-0.00016864	629.8206185918926	26.48	0.48256	26.47	26.253	26.735	-0.010645	1119	85	0.9479278	0.05132842	0.94640833	383.84146	0	20.78424						729	21	3	NaN	NaN	NaN	0.002833	1	17181	17181		108.51	65.515	1	418070			9744	4969	5648	5766	7697	7697					0.0109682697984681
HYPELKLPYF	10	Unmodified	_HYPELKLPYF_					0	0	0		ENST00000290541.6_1_1:151374297-151374348:+|nuORF	ENST00000290541.6_1_1:151374297-151374348:+|nuORF	ENST00000290541.6_1_1:151374297-151374348:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.8451561267001	2	653.845156	1305.67576	1.2819	0.0008382	-2.9339	-0.0019183	-1.6519	-0.0010801	653.8429105601746	26.698	0.169	26.698	26.601	26.77	0	1086	52	0.9680805	0.031125009	0.9680805	391.84515	0	12.598328						197	8	2	NaN	NaN	NaN	0.22448	1	18871	18871		33.425	21.877	1	22027			9745	6382	5649	5767	7698	7698					0.035148470912872654
HYPELKLPYF	10	Unmodified						0	0	0		ENST00000290541.6_1_1:151374297-151374348:+|nuORF	ENST00000290541.6_1_1:151374297-151374348:+|nuORF	ENST00000290541.6_1_1:151374297-151374348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	653.845156	1305.67576	0.63462	0.00041494	-2.093	-0.0013685	-1.4583	-0.00095353	654.345796548961	26.77	0.24133	26.759	26.687	26.928	-0.010645	1080	52	0.9717421	0.03112173	0.97022265	393.32724		12.596985	0.030712	0.00055985	0.0010711	NaN	33.425	186	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13636			9746	6382	5649	5767							0.035148470912872654
HYPLTTLRF	9	Unmodified	_HYPLTTLRF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.31656586275	2	574.316566	1146.61858	2.0092	0.0011539	-2.2934	-0.0013172	-0.28428	-0.00016326	574.8166543087966	22.067	0.48232	22.067	21.874	22.356	0	1152	73	0.92775106	0.044062257	0.92775106	376.0661	0	17.860748						609	21	4	NaN	NaN	NaN	0.090258	1	14692	14692		35.296	13.461	1	145870			9747	2723	5650	5768	7699	7699					0.05113424605565342
HYPLTTLRF	9	Unmodified	_HYPLTTLRF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.31656586275	2	574.316566	1146.61858	1.1792	0.00067723	-0.5468	-0.00031404	0.63239	0.00036319	574.3162321411759	22.187	0.40961	22.173	21.981	22.39	-0.013731	1155	67	0.92591566	0.040390372	0.9243962	375.3221	0	16.372345						493	18	4	NaN	NaN	NaN	0.022185	1	14208	14208		69.782	49.227	1	134500			9748	2723	5650	5768	7700	7700					0.05113424605565342
HYPPTTSFL	9	Unmodified	_HYPPTTSFL_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5254725122998	1	1062.52547	1061.5182	2.0857	0.0022162	-1.2467	-0.0013247	0.83902	0.00089148	1062.5236042011134	25.756	0.12068	25.745	25.696	25.817	-0.0116	150	58	1.5299006	0.033649445	1.5283811	310.37338	0	6.8265076						187	6	3	NaN	NaN	NaN	0.14301	1	10924	10924		29.598	3.8465	1	16743	+		9749	9236	5651	5769	7701	7701					-0.010102324481067626
HYPPVQVLF	9	Unmodified	_HYPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.3003844823	2	550.300384	1098.58622	2.0993	0.0011552	3.7085	0.0020408	5.8078	0.003196	550.3008013173187	26.336	0.48271	26.336	26.022	26.505	0	1215	124	0.8891654	0.075488865	0.8891654	360.6125	0	30.615448						1476	21	5	NaN	NaN	NaN	0.24994	1	12802	12802		22.126	0.29135	1	286460			9750	2061	5652	5770	7702	7702					0.040866372025675446
HYQDVSCLQF	10	Unmodified	_HYQDVSCLQF_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.27678038775	2	620.27678	1238.53901	1.5327	0.00095067	-1.8401	-0.0011413	-0.30741	-0.00019068	620.2754826493698	23.803	0.24092	23.803	23.682	23.923	0	1167	55	0.91857195	0.033053815	0.91857195	372.01675	0	13.386627						395	11	4	NaN	NaN	NaN	0.019815	1	17487	17487		63.765	39.203	1	78281			9751	683	5653	5771	7703	7703					-0.07072010130741546
HYQDVSCLQF	10	Unmodified	_HYQDVSCLQF_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.27678038775	2	620.27678	1238.53901	1.2714	0.00078863	-0.72781	-0.00045145	0.5436	0.00033718	620.276581110208	23.826	0.241	23.813	23.669	23.91	-0.013048	1164	70	0.9204082	0.04222858	0.91888875	372.7604	0	17.102386						429	11	4	NaN	NaN	NaN	0.032813	1	16750	16750		58.398	36.627	1	83113			9752	683	5653	5771	7704	7704					-0.07072010130741546
HYQFHRFRQYF	11	Unmodified	_HYQFHRFRQYF_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.6004979050333	3	543.600498	1627.77966	2.3408	0.0012725	-5.0177	-0.0027277	-2.677	-0.0014552	543.598788245451	15.963	0.071861	15.951	15.927	15.999	-0.012611	1242	49	0.87260187	0.02945429	0.8710824	528.6962	0	17.845886						79	4	2	NaN	NaN	NaN	0.7806	1	19749	19749		0.1369	0.018989	1	7266.9	+		9753	11114	5654	5772	7705	7705					-0.009114330285228789
HYQLIEHCR	9	Unmodified	_HYQLIEHCR_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.79293197845	2	599.792932	1197.57131	1.1668	0.00069986	-3.6293	-0.0021768	-2.4625	-0.001477	600.2918149343978	24.092	0.1689	24.092	23.971	24.14	0	1191	73	0.90387505	0.044095516	0.90387505	366.2026	0	17.865204						200	8	3	NaN	NaN	NaN	0.58159	1	16386	16386		6.2502	0.55606	1	24282			9754	2554	5655	5773	7706	7706					-0.01957177937083543
HYRVFPAL	8	Unmodified	_HYRVFPAL_					0	0	0			REV__CHL1|p.Q699H|1|0.33|ENSG00000134121|chr3:382640-382640|G/C|missense_variant	REV__CHL1|p.Q699H|1|0.33|ENSG00000134121|chr3:382640-382640|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.77961925045	2	501.779619	1001.54469	1.6859	0.00084595	5.1933	0.0026059	6.8792	0.0034518	501.78084150364197	22.405	0.14449	22.405	22.38	22.525	0	1302	49	0.8357362	0.029524446	0.8357362	339.3501	0	11.988342						109	7	2	NaN	NaN	NaN	0.84207	1	8665	8665		3.5732	0.0034402	1	9316.5	+		9755	8200	5656	5774	7707	7707					0.043975012338933084
HYSENMFSF	9	Unmodified	_HYSENMFSF_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.237123911	2	581.237124	1160.45969	1.5745	0.00091517	-4.8859	-0.0028399	-3.3114	-0.0019247	581.2331096425947	24.598	0.21701	24.598	24.526	24.743	0	1245	43	0.87076044	0.025780857	0.87076044	352.9148	0	10.448822						196	10	4	NaN	NaN	NaN	0.14787	1	15149	15149		28.896	17.725	1	21868			9756	1915	5657	5775	7708	7708					-0.11411657084886428
HYSENMFSF	9	Unmodified	_HYSENMFSF_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.237123911	2	581.237124	1160.45969	1.3482	0.00078364	-2.5784	-0.0014986	-1.2301	-0.00071499	581.2356762791538	24.598	0.16887	24.586	24.562	24.731	-0.012394	1242	46	0.87260187	0.027623832	0.8710824	353.6611	0	11.195801						184	8	3	NaN	NaN	NaN	0.070055	1	14637	14637		40.154	16.819	1	20048			9757	1915	5657	5775	7709	7709					-0.11411657084886428
HYSLFPLLF	9	Unmodified	_HYSLFPLLF_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.81058502785	2	568.810585	1135.60662	1.4454	0.00082217	-3.4883	-0.0019842	-2.0428	-0.001162	568.8083120976468	35.892	0.19277	35.892	35.844	36.036	0	1212	82	0.8910048	0.04963696	0.8910048	361.21252	0	20.122803						306	9	4	NaN	NaN	NaN	0.03623	1	14304	14304		52.758	27.797	1	34404			9758	4009	5658	5776	7710	7710					0.04423807862372087
HYSLFPLLF	9	Unmodified	_HYSLFPLLF_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.81058502785	2	568.810585	1135.60662	1.051	0.00059785	-3.1258	-0.001778	-2.0748	-0.0011801	568.8088092868163	36.011	0.21702	36.012	35.94	36.157	0.0011024	1209	100	0.892844	0.060687065	0.8913246	361.95813	0	24.602509						392	10	3	NaN	NaN	NaN	0.02781	1	13838	13838		61.977	32.378	1	49406			9759	4009	5658	5776	7711	7711					0.04423807862372087
HYSQELSLLYL	11	Unmodified	_HYSQELSLLYL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3560849537502	2	683.356085	1364.69762	1.7108	0.0011691	-2.5938	-0.0017725	-0.88294	-0.00060336	683.3542878096247	29.57	0.19305	29.57	29.498	29.691	0	1074	46	0.9754029	0.027454436	0.9754029	394.63016	0	11.107544						273	9	4	NaN	NaN	NaN	0.00017469	1	19744	19744		83.529	49.075	1	49674			9760	6112	5659	5777	7712	7712					0.029856070492087383
HYSQELSLLYL	11	Unmodified	_HYSQELSLLYL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3560849537502	2	683.356085	1364.69762	1.2466	0.00085188	-1.3353	-0.00091248	-0.088681	-6.0601E-05	683.3555495345321	29.618	0.24128	29.61	29.538	29.779	-0.0070648	1071	46	0.977233	0.027451396	0.97571355	395.37057	0	11.106354						284	11	4	NaN	NaN	NaN	0.077819	1	18823	18823		42.779	22.266	1	43596			9761	6112	5659	5777	7713	7713					0.029856070492087383
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2874740723	2	571.287474	1140.5604	2.0623	0.0011782	-1.5471	-0.00088381	0.51523	0.00029435	571.2868711819781	26.408	0.19307	26.408	26.336	26.529	0	1206	109	0.894683	0.06614339	0.894683	362.68475	0	26.81308						345	9	4	NaN	NaN	NaN	0.043119	1	14465	14465		49.833	34.657	1	54647			9762	625	5660	5778	7714	7714					-0.004262570397258969
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000058668|P23634-5|ATP2B4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2874740723	2	571.287474	1140.5604	1.2379	0.00070721	-0.043056	-2.4598E-05	1.1949	0.00068261	571.2876199402435	26.432	0.26541	26.421	26.349	26.614	-0.011137	1206	79	0.894683	0.04779601	0.89316356	362.68475	0	19.375458						374	12	3	NaN	NaN	NaN	0.028349	1	14002	14002		61.271	21.812	1	60069			9763	625	5660	5778	7715	7715					-0.004262570397258969
HYTLVAFAW	9	Unmodified	_HYTLVAFAW_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2847344181	2	554.284734	1106.55492	1.221	0.00067676	-1.4779	-0.00081917	-0.25692	-0.00014241	554.2840007894404	29.57	0.12064	29.57	29.522	29.642	0	1239	79	0.87444305	0.047863185	0.87444305	354.61002	0	19.40982						288	6	3	NaN	NaN	NaN	0.056143	1	13133	13133		44.302	29.127	1	50796			9764	3518	5661	5779	7716	7716					0.005900641684547736
HYTVSITSF	9	Unmodified	_HYTVSITSF_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5203871344	1	1054.52039	1053.51311	1.7672	0.0018636	-10.74	-0.011325	-8.9726	-0.0094618	1054.5092235915922	38.249	0.26435	38.252	38.18	38.445	0.0034256	186	73	1.5086359	0.042551875	1.5071164	306.08926	0	8.633392						446	12	4	NaN	NaN	NaN	0.043119	1	10561	10561		49.833	2.7927	1	68158			9765	417	5662	5780	7717	7717					-0.011505363107289668
HYTYILEVF	9	Unmodified	_HYTYILEVF_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8029569610001	2	592.802957	1183.59136	0.69937	0.00041459	-3.5858	-0.0021256	-2.8864	-0.0017111	592.8010531756178	29.738	0.193	29.731	29.659	29.852	-0.0070648	1179	61	0.9112251	0.03674233	0.90970564	369.2301	0	14.888062						257	9	3	NaN	NaN	NaN	0.12945	1	15352	15352		31.561	16.386	1	34010			9766	3721	5663	5781	7718	7718					0.006908962745228564
HYTYILEVF	9	Unmodified						0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.802957	1183.59136	1.5622	0.00092608	1.0048	0.00059562	2.567	0.0015217	592.803122066799	29.932	0.0965	29.932	29.908	30.004	0	1188	49	0.90571284	0.029409707	0.90571284	366.99652		11.916901	0.1005	0.001192	-0.0019964	NaN	31.561	169	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23276			9767	3721	5663	5781							0.006908962745228564
HYVCESCDKQF	11	Unmodified	_HYVCESCDKQF_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.7788299376999	2	679.77883	1357.54311	1.5846	0.0010772	-1.8235	-0.0012396	-0.23883	-0.00016235	679.7781890333451	21.489	0.16882	21.475	21.426	21.595	-0.014006	1107	76	0.9552588	0.04583633	0.9537394	386.50067	0	18.545502						480	8	4	NaN	NaN	NaN	0.4078	1	18744	18744		21.771	1.2577	1	99145			9768	1402	5664	5782	7719	7719					-0.1213628869936656
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.27710635125	2	554.277106	1106.53966	1.104	0.00061194	-2.3018	-0.0012758	-1.1978	-0.00066391	554.2759000300981	14.453	0.16785	14.453	14.381	14.549	0	1263	64	0.85970795	0.038685918	0.85970795	348.6346	0	15.688171						211	8	3	NaN	NaN	NaN	0.028569	1	13127	13127		60.984	23.681	1	30795			9769	3483	5665	5783	7720	7720					-0.009348474193984657
HYWRDIMGL	9	Unmodified	_HYWRDIMGL_					0	0	0			REV__PARP1-LIN9|1|fusion	REV__PARP1-LIN9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.7924006622001	2	595.792401	1189.57025	1.298	0.00077334	-3.8549	-0.0022967	-2.5569	-0.0015234	595.7909674983154	20.405	0.24038	20.405	20.333	20.573	0	1149	127	0.92958635	0.07714236	0.92958635	376.64832	0	31.256378						578	11	4	NaN	NaN	NaN	0.36492	1	16136	16136		15.175	0	1	92627	+		9770	9881	5666	5784	7721	7721					-0.016953923059872977
HYYTGTQGLIF	11	Unmodified	_HYYTGTQGLIF_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3220451711501	2	650.322045	1298.62954	1.5611	0.0010152	-5.3645	-0.0034887	-3.8034	-0.0024735	650.8190396340544	25.009	0.16892	25.009	24.96	25.129	0	1107	55	0.9552588	0.032986104	0.9552588	386.67734	0	13.352386						128	8	2	NaN	NaN	NaN	0.76276	1	18750	18750		3.261	0.049387	1	11589			9771	4414	5667	5785	7722	7722					-0.007832178108174048
IAAAHTFLL	9	Unmodified	_IAAAHTFLL_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.78182758839995	2	478.781828	955.549102	1.6601	0.00079485	-6.3889	-0.0030589	-4.7287	-0.002264	478.7795428846297	15.894	0.095866	15.894	15.87	15.966	0	1332	31	0.8172735	0.018474758	0.8172735	332.06973	0	7.5065613						71	5	2	NaN	NaN	NaN	0.36492	1	7238	7238		15.175	0.75036	1	6551.1			9772	4720	5668	5786	7723	7723					0.06954965656791501
IAAAHTFLL	9	Unmodified						0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.781828	955.549102	2.3672	0.0011334	-6.2863	-0.0030097	-3.9191	-0.0018764	478.77906872694325	15.891	0.14365	15.879	15.855	15.999	-0.012611	1332	31	0.8172735	0.01847279	0.81575406	332.06973		7.5057373	-0.0075672	4.5496E-05	-0.00075972	NaN	15.175	81	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6410.3			9773	4720	5668	5786							0.06954965656791501
IAAGENIIR	9	Unmodified	_IAAGENIIR_					0	0	0			REV__nc|ENSG00000107758|P16298-3|PPP3CB	REV__nc|ENSG00000107758|P16298-3|PPP3CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.77981621570007	2	478.779816	955.545079	2.3672	0.0011334	-2.0853	-0.00099838	0.28194	0.00013499	478.77906872694325	15.891	0.14365	15.879	15.855	15.999	-0.012611	1332	31	0.8172735	0.01847279	0.81575406	332.06973	0	7.5057373						81	7	2	NaN	NaN	NaN	0.48181	1	7099	7099		10.36	0	1	6410.3	+		9774	9019	5669	5787	7724	7724					0.06552876163095789
IAAMETISV	9	Unmodified	_IAAMETISV_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4913951919002	1	934.491395	933.484119	2.0713	0.0019356	-2.0981	-0.0019607	-0.026819	-2.5062E-05	934.4901937377497	25.346	0.072369	25.334	25.31	25.382	-0.012011	330	55	1.4233059	0.03208387	1.4217864	289.25604	0	6.520355						92	4	2	NaN	NaN	NaN	0.53206	1	6544	6544		8.2903	1.4271	1	10009			9775	3431	5670	5788	7725	7725					0.014716030686599879
IAAPELETL	9	Unmodified	_IAAPELETL_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5298891882002	1	956.529889	955.522613	1.625	0.0015543	0.012629	1.208E-05	1.6376	0.0015664	956.5295059560766	26.65	0.12068	26.65	26.625	26.746	0	276	103	1.4553556	0.06051922	1.4553556	295.67026	0	12.295074						273	6	2	NaN	NaN	NaN	0.025843	1	7232	7232		64.55	25.632	1	66114			9776	1574	5671	5789	7726	7726					0.04307231974826209
IAAPELETL	9	Unmodified	_IAAPELETL_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.4175	0.0013559	-0.38105	-0.00036448	1.0365	0.00099144	956.5298499979851	26.649	0.14482	26.639	26.614	26.759	-0.010645	273	91	1.4571344	0.05338788	1.4556149	296.03165	0	10.846283						368	7	3	NaN	NaN	NaN	0.028349	1	7091	7091		61.271	19.487	1	69296			9777	1574	5671	5789	7727	7727					0.04307231974826209
IADEEQKAL	9	Unmodified	_IADEEQKAL_					0	0	0		ENST00000532066.1_1_11:35745832-35827932:+|nuORF;ENSG00000166326|ENST00000299413|TRIM44	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7665714547	2	508.766571	1015.51859	1.6819	0.00085567	-2.2843	-0.0011622	-0.60241	-0.00030649	508.7655497133849	15.029	0.14413	15.029	15.005	15.15	0	1320	55	0.824661	0.033225775	0.824661	334.7906	0	13.48877						203	7	3	NaN	NaN	NaN	0.077759	1	9195	9195		39.039	9.0037	1	30862			9778	4469	5672	5790	7728	7728					0.011451424810957178
IADEEQKAL	9	Unmodified	_IADEEQKAL_					0	0	0		ENST00000532066.1_1_11:35745832-35827932:+|nuORF;ENSG00000166326|ENST00000299413|TRIM44	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7665714547	2	508.766571	1015.51859	0.97538	0.00049624	-2.2334	-0.0011363	-1.258	-0.00064002	508.76470139333156	15.004	0.14425	14.992	14.992	15.136	-0.011738	1320	52	0.824661	0.031381547	0.8231416	334.7906	0	12.740082						172	7	3	NaN	NaN	NaN	0.077759	1	9021	9021		39.039	14.477	1	30650			9779	4469	5672	5790	7729	7729					0.011451424810957178
IADEGTWTL	9	Unmodified	_IADEGTWTL_					0	0	0		ENSG00000170584|ENST00000302764|NUDCD2	ENSG00000170584|ENST00000302764|NUDCD2	ENSG00000170584|ENST00000302764|NUDCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.488752655	1	1005.48875	1004.48148	1.917	0.0019275	2.1881	0.0022001	4.1052	0.0041277	1005.4884564603058	26.698	0.19355	26.698	26.65	26.843	0	234	112	1.4802408	0.06570184	1.4802408	300.51755	0	13.338745						363	9	3	NaN	NaN	NaN	0.0094682	1	8759	8759		93.472	48.833	1	140400			9780	4738	5673	5791	7730	7730					-0.020585290646749854
IADEGTYTL	9	Unmodified	_IADEGTYTL_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4727682398001	1	982.472768	981.465492	1.4945	0.0014683	0.41988	0.00041252	1.9144	0.0018808	982.4733775315708	22.115	0.12057	22.101	22.077	22.197	-0.013731	237	55	1.4784646	0.03197825	1.4769452	300.25223	0	6.4942627						137	6	2	NaN	NaN	NaN	0.036546	1	7757	7757		52.624	18.185	1	19633			9781	5711	5674	5792	7731	7731					-0.025982353015592707
IADIEDIFV	9	Unmodified	_IADIEDIFV_					0	0	0			REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5404538745	1	1034.54045	1033.53318	1.1767	0.0012173	0.64922	0.00067165	1.8259	0.001889	1034.540743824606	37.241	0.096272	37.241	37.217	37.314	0	150	49	1.5299006	0.028334856	1.5299006	310.4812	0	5.7503357						76	5	2	NaN	NaN	NaN	0.63698	1	9929	9929		3.9685	0	1	5135.3	+		9782	8830	5675	5793	7732	7732					0.017752146292423276
IADIEDIFV	9	Unmodified						0	0	0			REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.54045	1033.53318	1.1767	0.0012173	0.64922	0.00067165	1.8259	0.001889	1034.540743824606	37.241	0.096272	37.241	37.217	37.314	0	150	49	1.5299006	0.028334856	1.5299006	310.4812		5.7503357	0.00015496	-0.00054637	-0.001011	NaN	3.9685	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5135.3	+		9783	8830	5675	5793							0.017752146292423276
IADIEDIFV	9	Unmodified						0	0	0			REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1034.54045	1033.53318	1.2915	0.0013361	1.5568	0.0016105	2.8483	0.0029467	1034.5420724234957	37.239	0.048183	37.241	37.217	37.265	0.0022507	144	37	1.533442	0.021248937	1.5319226	311.19992		4.3122864	-0.00015496	0.00039253	0.001011	NaN	3.9685	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5030.8	+		9784	8830	5675	5793							0.017752146292423276
IADPDEMRM	9	2 Oxidation (M)	_IADPDEM(Oxidation (M))RM(Oxidation (M))_		IADPDEM(1)RM(1)		IADPDEM(43)RM(43)	0	0	2		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2337239423001	2	555.233724	1108.45289	0.6194	0.00034391	-0.9317	-0.00051731	-0.3123	-0.0001734	555.2341457117169	12.796	0.21619	12.796	12.724	12.94	0	1290	43	0.84311575	0.0258255	0.84311575	341.89877	0	10.472717						207	10	4	NaN	NaN	NaN	0.059222	1	13198	13198		42.995	26.411	1	18086			9785	3532	5676	5794	7733	7733		395;396			-0.09699338027758131
IADPDQPVL	9	Unmodified	_IADPDQPVL_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.5094880971	1	967.509488	966.502212	2.0836	0.0020159	-1.1185	-0.0010822	0.96507	0.00093371	967.5079805914334	22.694	0.19294	22.694	22.645	22.838	0	285	109	1.4500183	0.06411314	1.4500183	294.53836	0	13.023132						413	9	4	NaN	NaN	NaN	0.0042638	1	7522	7522		104.2	51.44	1	72686			9786	3444	5677	5795	7734	7734					0.017620613149915698
IADPDQPVL	9	Unmodified	_IADPDQPVL_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5094880971	1	967.509488	966.502212	1.3251	0.001282	-0.28733	-0.000278	1.0377	0.001004	967.5092049957461	22.693	0.19286	22.68	22.631	22.824	-0.01354	285	103	1.4500183	0.06054485	1.4484988	294.53836	0	12.29834						414	9	4	NaN	NaN	NaN	0.0092442	1	7374	7374		93.929	59.49	1	70695			9787	3444	5677	5795	7735	7735					0.017620613149915698
IADPIVLAL	9	Unmodified	_IADPIVLAL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5764454503	1	924.576445	923.569169	1.0856	0.0010037	0.32697	0.00030231	1.4126	0.001306	924.5769143027743	33.721	0.096531	33.721	33.673	33.769	0	276	91	1.4553556	0.053393483	1.4553556	295.81558	0	10.852783						245	5	3	NaN	NaN	NaN	0.14301	1	6485	6485		29.598	9.0429	1	35832			9788	3536	5678	5796	7736	7736					0.1043271659674474
IADPIVLAL	9	Unmodified	_IADPIVLAL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5764454503	1	924.576445	923.569169	0.36147	0.0003342	-0.27653	-0.00025568	0.084933	7.8527E-05	924.5760297163108	33.72	0.12068	33.718	33.67	33.79	-0.0018463	270	94	1.458913	0.055170417	1.4573935	296.53867	0	11.213928						263	6	4	NaN	NaN	NaN	0.10956	1	6361	6361		34.439	11.104	1	35221			9789	3536	5678	5796	7737	7737					0.1043271659674474
IADPNIAKL	9	Unmodified	_IADPNIAKL_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.78456724259996	2	477.784567	953.554582	1.4067	0.00067209	-0.69971	-0.00033431	0.70697	0.00033778	477.78376775900875	20.285	0.048071	20.285	20.261	20.309	0	1341	34	0.8117308	0.020327687	0.8117308	329.8274	0	8.259705						66	3	2	NaN	NaN	NaN	0.3947	1	7177	7177		13.949	1.3609	1	15016			9790	1678	5679	5797	7738	7738					0.07594644448602139
IADPNIAKL	9	Unmodified	_IADPNIAKL_					0	0	0		ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	ENSG00000108506|ENST00000251334|INTS2	ENSG00000108506|ENST00000251334|INTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.78456724259996	2	477.784567	953.554582	1.3085	0.0006252	1.1457	0.00054741	2.4543	0.0011726	477.7847250050624	20.309	0.14453	20.295	20.271	20.415	-0.014141	1341	43	0.8117308	0.025867462	0.81021136	329.8274	0	10.51062						146	7	3	NaN	NaN	NaN	0.064504	1	7034	7034		40.957	12.061	1	18217			9791	1678	5679	5797	7739	7739					0.07594644448602139
IADPRGNTL	9	Unmodified	_IADPRGNTL_					0	0	0		ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.76162346255006	2	478.761623	955.508694	1.9231	0.00092072	-2.2352	-0.0010702	-0.31211	-0.00014943	478.7598639702211	15.7	0.11988	15.687	15.639	15.759	-0.012612	1308	73	0.83204526	0.044324994	0.8305259	338.0719	0	18.009857						214	6	3	NaN	NaN	NaN	0.27507	1	7086	7086		20.513	2.5436	1	16048			9792	4500	5680	5798	7740	7740					0.02915999266383551
IADTNFDVL	9	Unmodified	_IADTNFDVL_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.5044027192001	1	1007.5044	1006.49713	1.8966	0.0019108	0.27677	0.00027885	2.1733	0.0021896	1007.5061377891734	27.736	0.24129	27.736	27.664	27.905	0	216	112	1.4908947	0.065708876	1.4908947	302.67227	0	13.339813						525	11	4	NaN	NaN	NaN	0.012018	1	8836	8836		86.792	25.811	1	120900			9793	2430	5681	5799	7741	7741					-0.005862425476038879
IADTNFDVL	9	Unmodified	_IADTNFDVL_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5044027192001	1	1007.5044	1006.49713	1.4694	0.0014804	-0.11414	-0.00011499	1.3552	0.0013654	1007.5048812087699	27.759	0.19311	27.75	27.702	27.895	-0.009552	213	121	1.4926696	0.07103288	1.4911501	303.03262	0	14.420654						518	9	4	NaN	NaN	NaN	0.0073225	1	8668	8668		97.85	18.651	1	120150			9794	2430	5681	5799	7742	7742					-0.005862425476038879
IADWPVVVL	9	Unmodified	_IADWPVVVL_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.5873444876	1	1011.58734	1010.58007	1.3639	0.0013797	2.1337	0.0021584	3.4976	0.0035381	1011.5911195412799	34.855	0.1206	34.855	34.806	34.927	0	210	100	1.4944444	0.058536887	1.4944444	303.37634	0	11.883148						254	6	3	NaN	NaN	NaN	0.056143	1	9010	9010		44.302	5.3845	1	22110			9795	3839	5682	5800	7743	7743					0.07520118971035572
IADWPVVVL	9	Unmodified	_IADWPVVVL_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5873444876	1	1011.58734	1010.58007	1.5244	0.0015421	3.1396	0.003176	4.664	0.0047181	1011.5891936690401	34.853	0.12054	34.853	34.804	34.925	-0.0006485	210	109	1.4944444	0.06386173	1.4929249	303.37634	0	12.964111						214	6	2	NaN	NaN	NaN	0.14301	1	8834	8834		29.598	10.48	1	22821			9796	3839	5682	5800	7744	7744					0.07520118971035572
IAEFLGFFL	9	Unmodified	_IAEFLGFFL_					0	0	0		nc|ENSG00000138068|Q6IMI4-2|SULT6B1;ENSG00000138068|ENST00000535679|SULT6B1	nc|ENSG00000138068|Q6IMI4-2|SULT6B1	nc|ENSG00000138068|Q6IMI4-2|SULT6B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5764454503	1	1056.57645	1055.56917	1.4555	0.0015378	-10.695	-0.0113	-9.2392	-0.0097619	1056.5653721263807	37.29	0.12032	37.29	37.241	37.362	0	99	82	1.5599792	0.047736645	1.5599792	316.49844	0	9.685089						156	6	2	NaN	NaN	NaN	0.55027	1	10904	10904		7.5404	0.67717	1	10359			9797	3131	5683	5801	7745	7745					0.04360716596761449
IAFGGSYG	8	Unmodified	_IAFGGSYG_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.3671809563001	1	771.367181	770.359904	2.8467	0.0021959	-9.6497	-0.0074435	-6.803	-0.0052476	771.3593941788902	22.934	0.096502	22.921	22.872	22.969	-0.01354	1290	31	0.84311575	0.018444777	0.8415963	171.8715	0	3.760025						42	5	2	NaN	NaN	NaN	0.84876	1	4285	4285		0.39566	0	1	2180.6			9798	5051	5684	5802	7746	7746					-0.034461066365224724
IAFLWPELPK	10	Unmodified	_IAFLWPELPK_					0	0	0			REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.23750350089995	3	405.237504	1212.69068	0.9632	0.00039032	3.7675	0.0015267	4.7307	0.0019171	405.2385990775526	35.022	0.096539	35.022	34.998	35.094	-4.5776E-05	1422	76	0.7617651	0.04632467	0.7602457	462.8706	0	28.148224						145	5	2	NaN	NaN	NaN	0.77421	1	16136	16136		0.71611	0.28393	1	15251	+		9799	9296	5685	5803	7747	7747					0.09284338959241722
IAFLWPELPK	10	Unmodified						0	0	0			REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	405.237504	1212.69068	0.46335	0.00018776	4.6413	0.0018808	5.1046	0.0020686	405.239200121869	35.048	0.072388	35.048	35.023	35.096	0	1434	76	0.75435036	0.046329737	0.75435036	458.36517		28.151276	0.012803	0.00057516	-0.0029477	NaN	0.71611	164	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13032	+		9800	9296	5685	5803							0.09284338959241722
IAFLWPELPK	10	Unmodified						0	0	0			REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	REV__ENST00000555903.1_1_14:90745249-90755225:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	405.237504	1212.69068	0.9632	0.00039032	3.7675	0.0015267	4.7307	0.0019171	405.2385990775526	35.022	0.096539	35.022	34.998	35.094	-4.5776E-05	1422	76	0.7617651	0.04632467	0.7602457	462.8706		28.148224	-0.012803	-0.00048706	0.0029477	NaN	0.71611	145	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15251	+		9801	9296	5685	5803							0.09284338959241722
IAGAPLELVL	10	Unmodified	_IAGAPLELVL_					0	0	0		ENST00000471461.5_1_7:72717735-72721871:-|nuORF	ENST00000471461.5_1_7:72717735-72721871:-|nuORF	ENST00000471461.5_1_7:72717735-72721871:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.6135592381	1	995.613559	994.606283	1.187	0.0011818	-0.43976	-0.00043783	0.74722	0.00074394	995.6124315021224	33.817	0.072411	33.817	33.793	33.866	0	198	49	1.5015416	0.028383017	1.5015416	304.883	0	5.7630615						80	4	2	NaN	NaN	NaN	0.75966	1	8380	8380		3.9685	2.0439	1	6486.8			9802	7154	5686	5804	7748	7748					0.1087638814251477
IAGAVHKT	8	Unmodified	_IAGAVHKT_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.4675637029001	1	796.467564	795.460287	1.9856	0.0015815	0.18233	0.00014522	2.168	0.0017267	796.4678062656818	56.78	0.14416	56.78	56.756	56.9	0	495	76	1.3249949	0.044805884	1.3249949	269.95468	0	9.128784						235	7	3	NaN	NaN	NaN	0.84727	1	4694	4694		1.2418	0	1	29326			9803	4436	5687	5805	7749	7749					0.054375504171389366
IAGGVPVMF	9	Unmodified	_IAGGVPVMF_					0	0	0			REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.4804365751002	1	890.480437	889.47316	1.9648	0.0017496	1.7254	0.0015365	3.6902	0.0032861	890.4822580528688	28.508	0.048271	28.508	28.484	28.532	0	405	40	1.3786905	0.023229599	1.3786905	280.39035	0	4.7243347						53	3	2	NaN	NaN	NaN	0.58547	1	5929	5929		6.0903	2.937	1	3615.6	+		9804	9060	5688	5806	7750	7750					0.024002454850233335
IAHLEITAL	9	Unmodified	_IAHLEITAL_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.7923922746999	2	490.792392	979.570232	0.86119	0.00042267	-3.0458	-0.0014948	-2.1846	-0.0010722	490.790970328557	24.719	0.14478	24.707	24.682	24.827	-0.012392	1308	46	0.83204526	0.027683675	0.8305259	337.9541	0	11.244354						142	7	2	NaN	NaN	NaN	0.17818	1	7713	7713		26.732	2.8811	1	17531			9805	4254	5689	5807	7751	7751					0.07962930965641135
IAIDDIQVL	9	Unmodified	_IAIDDIQVL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000429595.1_1_6:128556737-128643312:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	nc|ENSG00000152894|Q15262|PTPRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.5720883539001	1	999.572088	998.564812	1.199	0.0011985	-0.13618	-0.00013612	1.0628	0.0010624	999.5728718673881	31.234	0.14483	31.229	31.181	31.326	-0.0050716	201	64	1.4997677	0.037258625	1.4982482	304.5063	0	7.5648193						151	7	2	NaN	NaN	NaN	0.018156	1	8352	8352		74.332	9.782	1	30919			9806	3792;7416	5690	5808	7752	7752					0.06547207383187015
IAIDWEPEM	9	Unmodified	_IAIDWEPEM_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47104281-47104563:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5077735375999	1	1103.50777	1102.5005	1.6828	0.001857	-0.086337	-9.5274E-05	1.5965	0.0017618	1103.5072762777577	29.739	0.096521	29.739	29.715	29.811	0	135	73	1.5387528	0.042475224	1.5387528	312.02032	0	8.612915						189	5	3	NaN	NaN	NaN	0.032826	1	12932	12932		55.413	23.852	1	19830			9807	1371	5691	5809	7753	7753					-0.04665315765282685
IAIDWEPEM	9	Unmodified	_IAIDWEPEM_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47104281-47104563:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5077735375999	1	1103.50777	1102.5005	1.2903	0.0014238	0.95446	0.0010533	2.2447	0.0024771	1103.5092458911415	29.738	0.12065	29.731	29.707	29.828	-0.0070648	132	73	1.5405227	0.042475224	1.5390033	312.3792	0	8.612946						170	6	3	NaN	NaN	NaN	0.21199	1	12598	12598		24.562	9.0993	1	20357			9808	1371	5691	5809	7754	7754					-0.04665315765282685
IAIDWEPEM	9	Oxidation (M)	_IAIDWEPEM(Oxidation (M))_		IAIDWEPEM(1)		IAIDWEPEM(50)	0	0	1		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47104281-47104563:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1119.5026881596998	1	1119.50269	1118.49541	1.7485	0.0019575	-0.21933	-0.00024554	1.5292	0.0017119	1119.503204521768	26.336	0.096493	26.324	26.276	26.373	-0.011137	138	82	1.5369828	0.047807455	1.5354633	311.6063	0	9.692444						195	5	3	NaN	NaN	NaN	0.042816	1	13202	13202		49.961	25.399	1	17006			9809	1371	5691	5810	7755	7755		154			-0.05909619627891516
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.78437027735	2	494.78437	987.554188	1.9885	0.0009839	-3.8545	-0.0019071	-1.8659	-0.00092324	494.7821572706977	26.432	0.072401	26.432	26.408	26.481	0	1335	34	0.8154261	0.02032113	0.8154261	331.16678	0	8.25296						59	4	2	NaN	NaN	NaN	0.84455	1	8141	8141		2.7852	0.86055	1	4079			9810	2212	5692	5811	7756	7756					0.059912695194157095
IALKVELIG	9	Unmodified	_IALKVELIG_					0	0	0		ENSG00000164465|ENST00000338728|DCBLD1;ENST00000534777.5_1_6:117860476-117866721:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.6186446160002	1	955.618645	954.611368	1.2222	0.0011679	0.26693	0.00025508	1.4891	0.001423	955.6185327637834	32.659	0.072399	32.659	32.635	32.707	0	234	49	1.4802408	0.028416157	1.4802408	300.73004	0	5.773102						109	4	3	NaN	NaN	NaN	0.51576	1	7209	7209		8.962	0.67169	1	9383.2			9811	4323	5693	5812	7757	7757					0.13224692005144334
IALKVELIG	9	Unmodified						0	0	0		ENSG00000164465|ENST00000338728|DCBLD1;ENST00000534777.5_1_6:117860476-117866721:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	955.618645	954.611368	1.2042	0.0011508	-0.73943	-0.00070662	0.46481	0.00044418	955.6184136996784	32.658	0.072395	32.655	32.631	32.703	-0.0031052	225	55	1.4855686	0.031968117	1.4840492	301.81244		6.494751	-0.0020926	-0.00048605	0.0019042	NaN	8.962	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11681			9812	4323	5693	5812							0.13224692005144334
IALTSGEWEVL	11	Unmodified	_IALTSGEWEVL_					0	0	0		ENST00000597253.5_1_19:4688763-4694742:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000597253.5_1_19:4688763-4694742:-|nuORF	ENST00000597253.5_1_19:4688763-4694742:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.3242535091001	2	609.324254	1216.63395	0.33546	0.0002044	-4.3102	-0.0026263	-3.9747	-0.0024219	609.3214528495835	31.235	0.12062	31.235	31.211	31.332	0	1158	67	0.92408	0.040394723	0.92408	374.32178	0	16.362885						143	6	3	NaN	NaN	NaN	0.69801	1	16908	16908		7.5876	0	1	13797			9813	3352	5694	5813	7758	7758					0.034302466121062025
IALTSGEWEVL	11	Unmodified	_IALTSGEWEVL_					0	0	0		ENST00000597253.5_1_19:4688763-4694742:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000597253.5_1_19:4688763-4694742:-|nuORF	ENST00000597253.5_1_19:4688763-4694742:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3242535091001	2	609.324254	1216.63395	0.54129	0.00032982	-1.3857	-0.00084434	-0.84441	-0.00051452	609.8249899801032	31.234	0.096544	31.229	31.181	31.277	-0.0050716	1158	58	0.92408	0.034873188	0.9225606	374.32178	0	14.126282						173	5	3	NaN	NaN	NaN	0.69801	1	16233	16233		7.5876	0	1	16997			9814	3352	5694	5813	7759	7759					0.034302466121062025
IAMVDVIF	8	Unmodified	_IAMVDVIF_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	907.4957522883001	1	907.495752	906.488476	1.2236	0.0011104	0.80863	0.00073382	2.0322	0.0018442	907.4975983539103	34.01	0.096561	34.01	33.986	34.083	0	324	55	1.42687	0.032080412	1.42687	290.10587	0	6.5224915						119	5	3	NaN	NaN	NaN	0.59262	1	6184	6184		25.752	1.9013	1	9822.7			9815	1517	5695	5814	7760	7760					0.031491122822103534
IAMVDVIF	8	Unmodified	_IAMVDVIF_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	907.4957522883001	1	907.495752	906.488476	1.583	0.0014366	-0.80628	-0.0007317	0.77673	0.00070488	907.4957925979488	34.009	0.096577	34.008	33.984	34.08	-0.0012474	318	46	1.4304334	0.026726604	1.428914	290.83035	0	5.43396						111	5	3	NaN	NaN	NaN	0.69631	1	6063	6063		19.285	2.8681	1	9542			9816	1517	5695	5814	7761	7761					0.031491122822103534
IANCNFSNTEI	11	Unmodified	_IANCNFSNTEI_					0	0	0			REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	REV__tr|U7T3L5|U7T3L5_FUSNUMethioninesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00451PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2795200419501	2	613.27952	1224.54449	0.57808	0.00035453	-9.7823	-0.0059993	-9.2042	-0.0056448	613.2726919830023	32.803	0.19302	32.8	32.751	32.945	-0.0031052	1176	49	0.9130621	0.029387534	0.91154265	369.8319	0	11.90329						119	9	2	NaN	NaN	NaN	0.73057	1	16397	16397		5.4499	0.26105	1	13189	+		9817	13595	5696	5815	7762	7762					-0.058803313389034884
IANIPEVIN	9	Unmodified	_IANIPEVIN_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5567726407	1	982.556773	981.549496	2.0088	0.0019737	-1.8131	-0.0017815	0.19563	0.00019222	982.5566254760661	26.384	0.072399	26.373	26.349	26.421	-0.011137	228	46	1.4837929	0.026641488	1.4822735	301.33395	0	5.410431						87	4	2	NaN	NaN	NaN	0.40649	1	7771	7771		13.463	1.4144	1	8101	+		9818	13634	5697	5816	7763	7763					0.05798340585988626
IANLEPVSL	9	Unmodified	_IANLEPVSL_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.5458736034001	1	955.545874	954.538597	1.9192	0.0018338	-0.71008	-0.00067851	1.2091	0.0011553	955.5454927229746	26.915	0.36203	26.904	26.759	27.121	-0.010645	294	178	1.4446791	0.10509133	1.4431597	293.50552	0	21.350647						1104	16	4	NaN	NaN	NaN	0.02431	1	7059	7059		66.544	21.379	1	518190			9819	2662	5698	5817	7764	7764					0.0595093821170849
IANQDPIAV	9	Unmodified	_IANQDPIAV_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.5098224481	1	940.509822	939.502546	1.85	0.0017399	-0.61989	-0.00058301	1.2301	0.0011569	940.5091032317498	21.753	0.1685	21.74	21.691	21.86	-0.013895	327	94	1.425088	0.055270195	1.4235686	289.59125	0	11.231445						325	8	3	NaN	NaN	NaN	0.013959	1	6676	6676		80.901	22.701	1	62527			9820	3947	5699	5818	7765	7765					0.030374810348462233
IANQDPIAV	9	Unmodified						0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	940.509822	939.502546	1.7144	0.0016125	-0.48357	-0.0004548	1.2309	0.0011577	940.5093286429365	21.754	0.14442	21.754	21.705	21.85	0	330	97	1.4233059	0.05706227	1.4233059	289.2291		11.595581	0.0069945	7.9222E-05	-0.00013136	NaN	80.901	321	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56581			9821	3947	5699	5818							0.030374810348462233
IAPFIKFL	8	Unmodified	_IAPFIKFL_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.79948902530003	2	474.799489	947.584425	0.37757	0.00017927	-2.1641	-0.0010275	-1.7865	-0.00084823	474.79868440813027	32.489	0.14481	32.486	32.414	32.558	-0.0031013	1329	46	0.81912065	0.027701616	0.8176012	332.85992	0	11.256897						131	7	2	NaN	NaN	NaN	0.55881	1	6906	6906		27.861	0	1	10343	+		9822	8632	5700	5819	7766	7766					0.10853628184611352
IAPFIKFL	8	Unmodified						0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	474.799489	947.584425	0.37757	0.00017927	-2.1641	-0.0010275	-1.7865	-0.00084823	474.79868440813027	32.489	0.14481	32.486	32.414	32.558	-0.0031013	1329	46	0.81912065	0.027701616	0.8176012	332.85992		11.256897	0.034088	-0.00047979	0.00016387	NaN	27.861	131	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10343	+		9823	8632	5700	5819							0.10853628184611352
IAQLDPEAL	9	Unmodified	_IAQLDPEAL_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.5251381613001	1	969.525138	968.517862	2.1587	0.0020929	-1.4966	-0.001451	0.66214	0.00064196	969.5239437538788	25.515	0.12056	25.515	25.467	25.588	0	270	61	1.458913	0.035565495	1.458913	296.33646	0	7.2240906						132	6	2	NaN	NaN	NaN	0.012018	1	7571	7571		86.792	28.593	1	19696			9824	2886	5701	5820	7767	7767					0.032343478320512986
IAQLDPEAL	9	Unmodified	_IAQLDPEAL_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.5251381613001	1	969.525138	968.517862	1.7931	0.0017385	-1.0463	-0.0010144	0.74683	0.00072407	969.5259055416576	25.515	0.12068	25.503	25.455	25.576	-0.0116	267	97	1.4606913	0.056947112	1.4591719	296.69766	0	11.567169						154	6	2	NaN	NaN	NaN	0.040769	1	7421	7421		50.831	5.6659	1	21810			9825	2886	5701	5820	7768	7768					0.032343478320512986
IASATEVSL	9	Unmodified	_IASATEVSL_					0	0	0		ENSG00000067445|ENST00000173898|TRO;nc|ENSG00000067445|Q12816-2|TRO	ENSG00000067445|ENST00000173898|TRO	ENSG00000067445|ENST00000173898|TRO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.4829389956	1	890.482939	889.475663	1.4132	0.0012585	-0.022428	-1.9972E-05	1.3908	0.0012385	890.4829606194445	22.066	0.19278	22.053	22.005	22.197	-0.013731	381	115	1.3929803	0.06789851	1.3914609	283.29654	0	13.808838						396	9	4	NaN	NaN	NaN	0.036546	1	5810	5810		52.624	8.3217	1	86351			9826	718	5702	5821	7769	7769					0.026503724236590642
IASLDSPQL	9	Unmodified	_IASLDSPQL_					0	0	0		ENSG00000092295|ENST00000206765|TGM1;nc|ENSG00000092295|P22735-2|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.5094880971002	1	943.509488	942.502212	1.6858	0.0015905	-0.1787	-0.0001686	1.5071	0.0014219	943.5090107892202	23.706	0.09642	23.706	23.682	23.778	0	309	82	1.435777	0.048102736	1.435777	291.7499	0	9.774475						191	5	4	NaN	NaN	NaN	0.04743	1	6884	6884		48.002	5.6846	1	23368			9827	1093	5703	5822	7770	7770					0.028660613150123027
IASLDSPQL	9	Unmodified	_IASLDSPQL_					0	0	0		ENSG00000092295|ENST00000206765|TGM1;nc|ENSG00000092295|P22735-2|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971002	1	943.509488	942.502212	1.9066	0.0017989	-1.094	-0.0010322	0.81263	0.00076672	943.5089344387021	23.73	0.09638	23.717	23.693	23.789	-0.013048	309	64	1.435777	0.037397385	1.4342575	291.7499	0	7.599121						128	5	2	NaN	NaN	NaN	0.006197	1	6747	6747		100.15	27.717	1	24049			9828	1093	5703	5822	7771	7771					0.028660613150123027
IASVKTLVYK	10	Unmodified	_IASVKTLVYK_					0	0	0			REV__tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	REV__tr|U7T3I1|U7T3I1_FUSNUCytochromec-typebiogenesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00416PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.56914170826667	3	374.569142	1120.6856	1.2838	0.00048086	5.1968	0.0019466	6.4806	0.0024274	374.57119465929827	20.694	0.02409	20.694	20.67	20.694	0	1485	58	0.72280174	0.03529471	0.72280174	439.6001	0	21.46585						61	2	2	NaN	NaN	NaN	0.59391	1	13725	13725		15.311	3.0043	1	22422	+		9829	13592	5704	5823	7772	7772					0.13008035096640924
IATLVYALF	9	Unmodified	_IATLVYALF_					0	0	0		nc|ENSG00000120925|Q96K19-5|RNF170;nc|ENSG00000120925|Q96K19-3|RNF170;nc|ENSG00000120925|Q96K19-2|RNF170;ENSG00000120925|ENST00000527424|RNF170;ENST00000528318.5_1_8:42716773-42751856:-|nuORF	nc|ENSG00000120925|Q96K19-5|RNF170	nc|ENSG00000120925|Q96K19-5|RNF170	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5920955145	1	1010.5921	1009.58482	1.5644	0.001581	-1.0489	-0.00106	0.51555	0.00052101	1010.5904067067512	35.866	0.0723	35.867	35.843	35.916	0.0011024	162	43	1.5228153	0.024800897	1.5212959	309.13986	0	5.0346985						73	4	2	NaN	NaN	NaN	0.03623	1	8800	8800		52.758	16.172	1	5839.2			9830	2280	5705	5824	7773	7773					0.08041003113794432
IATLVYALF	9	Unmodified						0	0	0		nc|ENSG00000120925|Q96K19-5|RNF170;nc|ENSG00000120925|Q96K19-3|RNF170;nc|ENSG00000120925|Q96K19-2|RNF170;ENSG00000120925|ENST00000527424|RNF170;ENST00000528318.5_1_8:42716773-42751856:-|nuORF	nc|ENSG00000120925|Q96K19-5|RNF170	nc|ENSG00000120925|Q96K19-5|RNF170	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1010.5921	1009.58482	1.3248	0.0013389	-0.4893	-0.00049448	0.83554	0.00084439	1010.5914882964349	35.868	0.072342	35.868	35.844	35.916	0	162	46	1.5228153	0.026573777	1.5228153	309.13983		5.394623	0.00022204	0.00027553	0.00075972	NaN	52.758	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5516.6			9831	2280	5705	5824							0.08041003113794432
IAVDRFTLT	9	Unmodified	_IAVDRFTLT_					0	0	0			REV__ZNF431|p.A149Qfs*3|1|0.14|ENSG00000196705|chr19:21182746-21182746|C/-|frameshift_variant	REV__ZNF431|p.A149Qfs*3|1|0.14|ENSG00000196705|chr19:21182746-21182746|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2952991044001	2	518.295299	1034.57605	1.5813	0.00081959	-9.4953	-0.0049214	-7.914	-0.0041018	518.2886816780513	21.344	0.048136	21.344	21.32	21.368	0	1263	70	0.85970795	0.042406917	0.85970795	348.9328	0	17.211853						107	3	3	NaN	NaN	NaN	0.65696	1	9987	9987		2.8895	0.42796	1	16257	+		9832	11118	5706	5825	7774	7774					0.060140294773418645
IAVDRFTLT	9	Unmodified						0	0	0			REV__ZNF431|p.A149Qfs*3|1|0.14|ENSG00000196705|chr19:21182746-21182746|C/-|frameshift_variant	REV__ZNF431|p.A149Qfs*3|1|0.14|ENSG00000196705|chr19:21182746-21182746|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.295299	1034.57605	1.5813	0.00081959	-9.4953	-0.0049214	-7.914	-0.0041018	518.2886816780513	21.344	0.048136	21.344	21.32	21.368	0	1263	70	0.85970795	0.042406917	0.85970795	348.9328		17.211853	0	0	0	NaN	2.8895	107	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16257	+		9833	11118	5706	5825							0.060140294773418645
IAVEAQEIL	9	Unmodified	_IAVEAQEIL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5564382897002	1	985.556438	984.549162	1.9596	0.0019313	-3.8266	-0.0037713	-1.8671	-0.0018401	985.5522297737391	26.384	0.048273	26.373	26.373	26.421	-0.011137	261	49	1.4642475	0.028449416	1.462728	297.35208	0	5.7773438						66	3	2	NaN	NaN	NaN	0.12104	1	7869	7869		32.778	5.4818	1	8438.5			9834	2773	5707	5826	7775	7775					0.056269208661547054
IAVEAQEIL	9	Unmodified						0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	985.556438	984.549162	2.2537	0.0022211	-3.2214	-0.0031749	-0.9677	-0.00095373	985.552405524225	26.384	0.07238	26.384	26.36	26.432	0	267	46	1.4606913	0.02667272	1.4606913	296.6299		5.416565	0.0057035	0.00031648	-0.0010184	NaN	32.778	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9002.9			9835	2773	5707	5826							0.056269208661547054
IAVEGSIVYQ	10	Unmodified	_IAVEGSIVYQ_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7925892399501	2	539.792589	1077.57063	1.7477	0.00094338	6.7944	0.0036676	8.5421	0.0046109	539.7960005700774	23.73	0.072296	23.717	23.717	23.789	-0.013048	1239	49	0.87444305	0.029463828	0.8729236	354.7273	0	11.952301						103	4	3	NaN	NaN	NaN	0.71559	1	11564	11564		6.9844	1.5185	1	7912.6	+		9836	9516	5708	5827	7776	7776					0.03494305894855643
IAVEGSIVYQ	10	Unmodified						0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.792589	1077.57063	1.7903	0.00096641	9.428	0.0050891	11.218	0.0060555	539.796884601634	23.706	0.096371	23.706	23.658	23.754	0	1242	46	0.87260187	0.027620852	0.87260187	353.98038		11.204681	-0.0053725	0.0015786	-0.00016088	NaN	6.9844	91	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7564.1	+		9837	9516	5708	5827							0.03494305894855643
IAVEGSIVYQ	10	Unmodified						0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.792589	1077.57063	1.7477	0.00094338	6.7944	0.0036676	8.5421	0.0046109	539.7960005700774	23.73	0.072296	23.717	23.717	23.789	-0.013048	1239	49	0.87444305	0.029463828	0.8729236	354.7273		11.952301	0.0053725	-0.0012645	0.00016088	NaN	6.9844	103	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7912.6	+		9838	9516	5708	5827							0.03494305894855643
IAWEGVKG	8	Unmodified	_IAWEGVKG_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4672293519002	1	859.467229	858.459953	1.9241	0.0016537	-0.10464	-8.9935E-05	1.8195	0.0015638	859.4669533042465	27.905	0.096518	27.905	27.857	27.953	0	375	52	1.3965509	0.030357838	1.3965509	284.17896	0	6.177429						87	5	2	NaN	NaN	NaN	0.82797	1	5518	5518		5.4659	0	1	8282.1	+		9839	10363	5709	5828	7777	7777					0.025061306972929742
ICAMERLALG	10	Unmodified	_ICAMERLALG_					0	0	0			REV__ENSG00000125337|ENST00000643607|KIF25	REV__ENSG00000125337|ENST00000643607|KIF25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5590976016	1	1076.5591	1075.55182	1.24	0.0013349	3.0285	0.0032603	4.2684	0.0045952	1076.5629233010186	26.964	0.19303	26.964	26.891	27.084	0	99	73	1.5599792	0.042443752	1.5599792	316.4225	0	8.609192						175	9	2	NaN	NaN	NaN	0.20271	1	11795	11795		35.296	0.8425	1	12318	+		9840	9392	5710	5829	7778	7778					0.017067297277890248
ICDEHPMNI	9	Unmodified	_ICDEHPMNI_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.23352697705	2	536.233527	1070.4525	1.1161	0.00059851	-10.607	-0.005688	-9.4913	-0.0050895	536.7273620423377	35.41	0.048275	35.41	35.385	35.434	0	1302	46	0.8357362	0.027680635	0.8357362	339.054	0	11.229889						70	3	3	NaN	NaN	NaN	0.51576	1	11565	11565		8.962	1.9776	1	4011.4	+		9841	9189	5711	5830	7779	7779					-0.07990712956961943
ICDRGRVVSYF	11	Unmodified	_ICDRGRVVSYF_					0	0	0			REV__ENST00000393328.6_1_17:47677597-47677654:-|nuORF	REV__ENST00000393328.6_1_17:47677597-47677654:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8347967931501	2	657.834797	1313.65504	2.0277	0.0013339	-11.676	-0.0076811	-9.6486	-0.0063472	658.3277834312701	25.974	0.12068	25.962	25.938	26.059	-0.0116	1098	82	0.960755	0.049492598	0.9592356	388.85535	0	20.031586						203	6	4	NaN	NaN	NaN	0.63477	1	18164	18164		11.739	0.56853	1	19025	+		9842	11985	5712	5831	7780	7780					0.010759334399608633
ICFLFFFV	8	Unmodified	_ICFLFFFV_					0	0	0			REV__ENST00000395878.7_1_16:23582258-23582429:+|nuORF	REV__ENST00000395878.7_1_16:23582258-23582429:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5372231725	1	1035.53722	1034.52995	1.4877	0.0015405	3.3952	0.0035159	4.8829	0.0050564	1035.5412871020571	34.202	0.02412	34.201	34.201	34.225	-0.0012474	171	61	1.5174994	0.03544867	1.51598	307.96057	0	7.1939087						56	2	2	NaN	NaN	NaN	0.83849	1	9766	9766		4.0537	0	1	4793.6	+		9843	12010	5713	5832	7781	7781					0.014062930415320807
ICGFALHTYQ	10	Unmodified	_ICGFALHTYQ_					0	0	0			REV__ENSG00000103023|ENST00000567164|PRSS54	REV__ENSG00000103023|ENST00000567164|PRSS54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.77895893595	2	576.778959	1151.54336	2.2999	0.0013265	-7.444	-0.0042936	-5.1441	-0.002967	576.7747789567019	18.508	0.1438	18.508	18.412	18.556	0	1239	64	0.87444305	0.038639963	0.87444305	354.43958	0	15.661987						133	7	2	NaN	NaN	NaN	0.72369	1	14855	14855		6.4299	0.98	1	14563	+		9844	8902	5714	5833	7782	7782					-0.026345009172018763
ICKGVSERPR	10	Unmodified	_ICKGVSERPR_					0	0	0		ENST00000435096.1_1_7:139044701-139059229:+|nuORF	ENST00000435096.1_1_7:139044701-139059229:+|nuORF	ENST00000435096.1_1_7:139044701-139059229:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1144.6255376829	1	1144.62554	1143.61826	2.0375	0.0023322	-3.3214	-0.0038018	-1.2839	-0.0014696	1144.621465636284	30.052	0.096533	30.045	29.997	30.094	-0.0064106	69	46	1.5776473	0.026492357	1.5761279	319.76486	0	5.369568						81	5	2	NaN	NaN	NaN	0.65442	1	14113	14113		11.17	0	1	5329.6			9845	6990	5715	5834	7783	7783					0.05219681614039473
ICSDLSIERI	10	Unmodified	_ICSDLSIERI_					0	0	0			REV__ENSG00000176742|ENST00000641270|OR51V1	REV__ENSG00000176742|ENST00000641270|OR51V1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8026309975002	2	574.802631	1147.59071	1.8705	0.0010752	7.9382	0.0045629	9.8086	0.005638	574.8081399475582	18.964	0.072056	18.964	18.94	19.012	0	1221	49	0.885486	0.029441535	0.885486	358.9302	0	11.9340515						75	4	2	NaN	NaN	NaN	0.72369	1	14727	14727		6.4299	0	1	7029.6	+		9846	10755	5716	5835	7784	7784					0.02281733563177113
ICSYHEASSW	10	Unmodified	_ICSYHEASSW_					0	0	0			REV__ENST00000508195.1_1_15:44647392-44647548:+|nuORF	REV__ENST00000508195.1_1_15:44647392-44647548:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.83432933740005	3	394.834329	1181.48116	2.0287	0.00080101	-3.9088	-0.0015433	-1.8801	-0.00074232	394.8330013022918	22.284	0.048212	22.27	22.27	22.318	-0.013731	1512	49	0.7060759	0.029762268	0.70455647	429.15955	0	18.089783						41	3	2	NaN	NaN	NaN	0.77928	1	15275	15275		0.21374	0	1	2689.4	+		9847	12545	5717	5836	7785	7785					-0.1023227205614603
ICVFLIKIF	9	Unmodified	_ICVFLIKIF_					0	0	0		ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENST00000557005.1_1_14:64469755-64489638:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.3353813926001	2	548.335381	1094.65621	1.0325	0.00056614	-3.8723	-0.0021233	-2.8398	-0.0015572	548.3331932909341	37.239	0.31291	37.241	37.145	37.458	0.0022507	1224	61	0.883646	0.03679794	0.88212657	358.38998	0	14.92453						411	14	3	NaN	NaN	NaN	0.22308	1	12299	12299		23.85	4.5657	1	76256			9848	7576	5718	5837	7786	7786					0.11266799546820039
ICYCTRSQPQ	10	Unmodified	_ICYCTRSQPQ_					0	0	0			REV__ENST00000542554.5_1_X:37208678-37245924:+|nuORF	REV__ENST00000542554.5_1_X:37208678-37245924:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.77080794035	2	599.770808	1197.52706	1.5881	0.00095248	-7.1273	-0.0042747	-5.5392	-0.0033223	599.7665631894669	28.243	0.26542	28.243	28.146	28.412	0	1182	73	0.9093879	0.044100344	0.9093879	368.43628	0	17.867126						432	12	5	NaN	NaN	NaN	0.70677	1	16378	16378		7.5876	2.1377	1	57894	+		9849	12703	5719	5838	7787	7787					-0.06379950145606017
ICYKFPDEF	9	Unmodified	_ICYKFPDEF_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.26789272315	2	581.267893	1160.52123	2.0199	0.0011741	-0.96254	-0.00055949	1.0574	0.00061462	581.2696635997571	19.684	0.023983	19.684	19.66	19.684	0	1218	49	0.8873258	0.029438376	0.8873258	359.62842	0	11.931183						65	2	3	NaN	NaN	NaN	0.46215	1	15153	15153		11.17	0	1	5630			9850	2200	5720	5839	7788	7788					-0.0526072538561948
ICYKFPDEF	9	Unmodified						0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.267893	1160.52123	1.8068	0.0010502	0.71697	0.00041675	2.5238	0.001467	581.2702639544443	19.683	0.096272	19.669	19.597	19.693	-0.014141	1221	58	0.885486	0.034952402	0.88396657	358.88275		14.166016	-0.0075884	0.00096151	-0.0016796	NaN	11.17	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7046.2			9851	2200	5720	5839							-0.0526072538561948
IDAEAFTL	8	Unmodified	_IDAEAFTL_					0	0	0		ENST00000519756.1_2_10:102732774-102738941:+|nuORF;nc|ENSG00000095539|Q9NTN9-3|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	ENST00000519756.1_2_10:102732774-102738941:+|nuORF	ENST00000519756.1_2_10:102732774-102738941:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4458252078001	1	879.445825	878.438549	1.4491	0.0012744	0.43265	0.00038049	1.8817	0.0016549	879.4448558982981	30.848	0.048313	30.842	30.842	30.891	-0.0057545	387	49	1.389409	0.028579712	1.3878895	282.6243	0	5.813507						75	3	2	NaN	NaN	NaN	0.81251	1	5656	5656		7.5404	0	1	5208.6			9852	1129	5721	5840	7789	7789					-0.005532991220889016
IDCMYHNVL	9	Unmodified	_IDCMYHNVL_					0	0	0			REV__ENSG00000197125|ENST00000642064|OR8B8	REV__ENSG00000197125|ENST00000642064|OR8B8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2517197302001	2	554.25172	1106.48889	0.85771	0.00047539	4.4998	0.002494	5.3575	0.0029694	554.7551398163091	33.913	0.096497	33.911	33.863	33.96	-0.0012474	1245	85	0.87076044	0.05153382	0.869241	353.11688	0	20.898376						137	5	3	NaN	NaN	NaN	0.63698	1	12746	12746		3.9685	0.39873	1	11973	+		9853	11135	5722	5841	7790	7790					-0.060098360602523826
IDCMYHNVL	9	Unmodified						0	0	0			REV__ENSG00000197125|ENST00000642064|OR8B8	REV__ENSG00000197125|ENST00000642064|OR8B8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.25172	1106.48889	0.85771	0.00047539	4.4998	0.002494	5.3575	0.0029694	554.7551398163091	33.913	0.096497	33.911	33.863	33.96	-0.0012474	1245	85	0.87076044	0.05153382	0.869241	353.11688		20.898376	-0.001238	-0.00090362	0.00016107	NaN	3.9685	137	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11973	+		9854	11135	5722	5841							-0.060098360602523826
IDDITLAVF	9	Unmodified	_IDDITLAVF_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5455392524	1	1006.54554	1005.53826	1.8589	0.001871	-0.36043	-0.00036279	1.4984	0.0015083	1006.5455007054713	30.824	0.26546	30.818	30.746	31.011	-0.0057564	216	175	1.4908947	0.10309625	1.4893752	302.67618	0	20.930237						557	12	2	NaN	NaN	NaN	0.030391	1	8642	8642		58.599	8.6378	1	406110	+		9855	10483	5723	5842	7791	7791					0.03571518491844472
IDDITLAVF	9	Unmodified						0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1006.54554	1005.53826	1.8589	0.001871	-0.36043	-0.00036279	1.4984	0.0015083	1006.5455007054713	30.824	0.26546	30.818	30.746	31.011	-0.0057564	216	175	1.4908947	0.10309625	1.4893752	302.67618		20.930237	-0.0034358	0.00012128	0.00012786	NaN	58.599	557	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406110	+		9856	10483	5723	5842							0.03571518491844472
IDECTEMPFV	10	Unmodified	_IDECTEMPFV_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2541250334	2	592.254125	1182.4937	1.6619	0.00098428	2.7114	0.0016058	4.3733	0.0025901	592.255423676768	25.515	0.16889	25.503	25.455	25.624	-0.0116	1194	76	0.902037	0.045965135	0.9005176	365.511	0	18.625336						272	8	3	NaN	NaN	NaN	0.44258	1	15301	15301		21.835	4.036	1	94461			9857	922	5724	5843	7792	7792					-0.09024996708149047
IDEPVPIEI	9	Unmodified	_IDEPVPIEI_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.78169020265	2	512.78169	1023.54883	1.7193	0.00088163	-0.93237	-0.0004781	0.78695	0.00040353	512.7813581396917	27.543	0.09654	27.543	27.519	27.615	0	1323	52	0.8228144	0.03137821	0.8228144	334.0059	0	12.737366						134	5	2	NaN	NaN	NaN	0.31737	1	9514	9514		17.799	3.7574	1	13362	+		9858	10913	5725	5844	7793	7793					0.037995011462726325
IDFMEPPC	8	Unmodified	_IDFMEPPC_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.3950519657001	1	951.395052	950.387775	1.5807	0.0015039	6.7983	0.0064679	8.379	0.0079718	951.4021896549758	26.698	0.12115	26.698	26.674	26.795	0	174	52	1.5157272	0.03013289	1.5157272	307.95895	0	6.122284						106	6	3	NaN	NaN	NaN	0.74229	1	7088	7088		16.417	1.4037	1	9978.5	+		9859	8547	5726	5845	7794	7794					-0.08940287762948174
IDFVLAGV	8	Unmodified	_IDFVLAGV_					0	0	0			REV__ACTL6A-ALG3|1|fusion;REV__ENSG00000136518|ENST00000429709|ACTL6A	REV__ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4767314057001	1	833.476731	832.469455	0.98518	0.00082112	-0.95124	-0.00079283	0.033942	2.829E-05	833.4756388480591	31.428	0.072399	31.428	31.38	31.452	0	453	43	1.3500742	0.025063276	1.3500742	274.85675	0	5.102539						68	4	2	NaN	NaN	NaN	0.74229	1	5169	5169		16.417	3.8288	1	6183.8	+		9860	8121;8626	5727	5846	7795	7795					0.04651898982808689
IDFVLAGV	8	Unmodified						0	0	0			REV__ACTL6A-ALG3|1|fusion;REV__ENSG00000136518|ENST00000429709|ACTL6A	REV__ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	833.476731	832.469455	0.98518	0.00082112	-0.95124	-0.00079283	0.033942	2.829E-05	833.4756388480591	31.428	0.072399	31.428	31.38	31.452	0	453	43	1.3500742	0.025063276	1.3500742	274.85675		5.102539	0.015123	0.00019132	-0.0010301	NaN	16.417	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6183.8	+		9861	8121;8626	5727	5846							0.04651898982808689
IDFVLAGV	8	Unmodified						0	0	0			REV__ACTL6A-ALG3|1|fusion;REV__ENSG00000136518|ENST00000429709|ACTL6A	REV__ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	833.476731	832.469455	1.0571	0.00088108	-1.5483	-0.0012905	-0.49116	-0.00040937	833.4744039947152	31.403	0.072386	31.398	31.374	31.446	-0.0050716	447	43	1.3536539	0.025057912	1.3521345	275.58554		5.1014404	-0.015123	-0.00030631	0.0010301	NaN	16.417	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5307.6	+		9862	8121;8626	5727	5846							0.04651898982808689
IDGAIGCF	8	Unmodified	_IDGAIGCF_					0	0	0			REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|60	REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3705517747001	1	795.370552	794.363275	1.3652	0.0010858	-1.613	-0.001283	-0.24786	-0.00019714	795.3689924625361	28.459	0.12066	28.451	28.403	28.523	-0.0083504	519	73	1.310647	0.04308033	1.3091276	267.03772	0	8.777374						153	6	2	NaN	NaN	NaN	0.83849	1	4592	4592		4.0537	1.2685	1	14617	+		9863	8205	5728	5847	7796	7796					-0.04213179854173177
IDGDCMHRE	9	Unmodified	_IDGDCMHRE_					0	0	0			REV__nc|ENSG00000181222|P24928-2|POLR2A	REV__nc|ENSG00000181222|P24928-2|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2184082291001	2	538.218408	1074.42226	1.1232	0.00060455	-8.9011	-0.0047907	-7.7778	-0.0041862	538.2141507676603	27.156	0.048267	27.146	27.122	27.17	-0.010126	1314	67	0.8283535	0.040591657	0.8268341	336.0431	0	16.467041						87	3	3	NaN	NaN	NaN	0.56671	1	11428	11428		6.8632	2.8947	1	7490.6	+		9864	10839	5729	5848	7797	7797					-0.11197071622132171
IDGDTFLD	8	Unmodified	_IDGDTFLD_					0	0	0			REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.4043543235999	1	895.404354	894.397078	0.99185	0.00088811	-3.0196	-0.0027037	-2.0277	-0.0018156	895.4025632536949	33.938	0.14479	33.938	33.914	34.059	0	384	46	1.3911947	0.026786327	1.3911947	282.9097	0	5.4472046						129	7	3	NaN	NaN	NaN	0.72043	1	5986	5986		17.78	0	1	10977	+		9865	9568	5730	5849	7798	7798					-0.05434479881432708
IDGESLEL	8	Unmodified	_IDGESLEL_					0	0	0			REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;REV__ENSG00000066084|ENST00000301180|DIP2B	REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.435654452	1	875.435654	874.428378	1.6859	0.0014759	-1.9125	-0.0016743	-0.22662	-0.00019839	875.4349594496646	24.236	0.048279	24.224	24.199	24.248	-0.012747	432	52	1.3625998	0.030412912	1.3610804	277.19055	0	6.1868286						55	3	2	NaN	NaN	NaN	0.27223	1	5597	5597		44.302	0	1	4024.6	+		9866	8313;8542	5731	5850	7799	7799					-0.013859068473266234
IDGFQQLDL	9	Unmodified	_IDGFQQLDL_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B;ENSG00000197520|ENST00000445590|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5309518207	1	1048.53095	1047.52368	0.78824	0.00082649	-9.8936	-0.010374	-9.1053	-0.0095472	1048.5210974017612	31.765	0.12072	31.761	31.737	31.857	-0.0044155	159	58	1.5245869	0.033656597	1.5230675	309.34845	0	6.829132						188	6	2	NaN	NaN	NaN	0.13602	1	10313	10313		30.61	2.8213	1	32898			9867	5710	5732	5851	7800	7800					0.001814463437312952
IDGPGPSS	8	Unmodified	_IDGPGPSS_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.3413601363001	1	729.34136	728.334084	1.2754	0.00093021	5.1206	0.0037347	6.396	0.0046649	729.3451362721416	24.767	0.14479	24.767	24.743	24.888	0	657	43	1.2279087	0.025243282	1.2279087	250.56516	0	5.1510773						134	7	2	NaN	NaN	NaN	0.8439	1	3739	3739		3.1533	0	1	11372	+		9868	9556	5733	5852	7801	7801					-0.04095000878805877
IDGPGPSS	8	Unmodified						0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	729.34136	728.334084	1.2754	0.00093021	5.1206	0.0037347	6.396	0.0046649	729.3451362721416	24.767	0.14479	24.767	24.743	24.888	0	657	43	1.2279087	0.025243282	1.2279087	250.56516		5.1510773	0.0062738	-8.1474E-05	0.00075972	NaN	3.1533	134	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11372	+		9869	9556	5733	5852							-0.04095000878805877
IDGPGPSS	8	Unmodified						0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	729.34136	728.334084	1.4297	0.0010428	5.4046	0.0039418	6.8343	0.0049845	729.3449227287894	24.767	0.096489	24.755	24.731	24.827	-0.012392	657	40	1.2279087	0.02343893	1.2263893	250.56516		4.7828827	-0.0062738	0.00012564	-0.00075972	NaN	3.1533	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8591.5	+		9870	9556	5733	5852							-0.04095000878805877
IDGTAGKS	8	Unmodified	_IDGTAGKS_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.3835593020001	1	748.383559	747.376283	1.5055	0.0011267	4.0229	0.0030107	5.5284	0.0041374	748.3872773424577	30.342	0.072395	30.342	30.294	30.366	0	570	79	1.2801172	0.046760082	1.2801172	261.0958	0	9.537308						109	4	2	NaN	NaN	NaN	0.78264	1	4000	4000		11.548	2.4253	1	9020	+		9871	11152	5734	5853	7802	7802					-0.00751025470424338
IDGTSTFVI	9	Unmodified	_IDGTSTFVI_					0	0	0			REV__ENSG00000162972|ENST00000392290|MAIP1	REV__ENSG00000162972|ENST00000392290|MAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4985890598001	1	952.498589	951.491313	1.1992	0.0011423	-8.1435	-0.0077566	-6.9442	-0.0066143	952.4888503785119	27.084	0.14481	27.074	27.049	27.194	-0.010124	297	79	1.4428991	0.04625964	1.4413797	293.1573	0	9.398682						189	7	2	NaN	NaN	NaN	0.10956	1	6988	6988		34.439	1.986	1	23287	+		9872	10264	5735	5854	7803	7803					0.0136265894071812
IDIKGKGK	8	Unmodified	_IDIKGKGK_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.77400255630005	2	429.774003	857.533452	1.9127	0.00082203	-1.4784	-0.00063537	0.43434	0.00018667	429.7732789838019	23.778	0.072338	23.765	23.765	23.837	-0.013048	1464	31	0.73579943	0.018563092	0.73428	299.44974	0	7.5546265						50	4	2	NaN	NaN	NaN	0.83211	1	5375	5375		4.9097	0	1	3760.1	+		9873	9561	5736	5855	7804	7804					0.0989867913975786
IDINMYSLL	9	Unmodified	_IDINMYSLL_					0	0	0			REV__KLHL23|p.I226M|1|0.22|ENSG00000213160|chr2:169735692-169735692|C/G|missense_variant	REV__KLHL23|p.I226M|1|0.22|ENSG00000213160|chr2:169735692-169735692|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5598091081	1	1081.55981	1080.55253	1.1136	0.0012044	0.29758	0.00032185	1.4112	0.0015263	1081.558713685257	32.224	0.21719	32.22	32.196	32.413	-0.0037613	93	79	1.5635144	0.045956492	1.5619949	317.12097	0	9.321167						293	10	2	NaN	NaN	NaN	0.10363	1	11698	11698		35.296	0	1	27017	+		9874	13028	5737	5856	7805	7805					0.015478476484986459
IDKRYIDKI	9	Unmodified	_IDKRYIDKI_					0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.34278061325	2	582.342781	1162.67101	2.3607	0.0013747	2.815	0.0016393	5.1756	0.003014	582.3443992042918	23.971	0.31367	23.971	23.899	24.213	0	1179	73	0.9112251	0.044076502	0.9112251	369.3066	0	17.863586						646	14	4	NaN	NaN	NaN	0.031015	1	15242	15242		71.985	23.983	1	686330	+		9875	13574	5738	5857	7806	7806					0.0961796294850501
IDKRYIDKI	9	Unmodified	_IDKRYIDKI_					0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.34278061325	2	582.342781	1162.67101	2.2901	0.0013336	2.1029	0.0012246	4.3929	0.0025582	582.343967853914	24.116	0.24126	24.103	24.006	24.248	-0.012749	1176	88	0.9130621	0.05327928	0.91154265	370.05115	0	21.593353						613	11	5	NaN	NaN	NaN	0.033148	1	14721	14721		61.199	5.607	1	688930	+		9876	13574	5738	5857	7807	7807					0.0961796294850501
IDKRYIDKI	9	Unmodified						0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.342781	1162.67101	2.3607	0.0013747	2.815	0.0016393	5.1756	0.003014	582.3443992042918	23.971	0.31367	23.971	23.899	24.213	0	1179	73	0.9112251	0.044076502	0.9112251	369.3066		17.863586	-0.065896	0.00049231	-0.00015879	NaN	71.985	646	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686330	+		9877	13574	5738	5857							0.0961796294850501
IDKRYIDKI	9	Unmodified						0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.342781	1162.67101	2.2901	0.0013336	2.1029	0.0012246	4.3929	0.0025582	582.343967853914	24.116	0.24126	24.103	24.006	24.248	-0.012749	1176	88	0.9130621	0.05327928	0.91154265	370.05115		21.593353	0.065896	-0.00033709	0.00015879	NaN	71.985	613	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688930	+		9878	13574	5738	5857							0.0961796294850501
IDNKVCGLSF	10	Unmodified	_IDNKVCGLSF_					0	0	0			REV__ENSG00000233802|ENST00000623787|TRIM49D2	REV__ENSG00000233802|ENST00000623787|TRIM49D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2787917604501	2	548.278792	1094.54303	1.0905	0.00059787	4.6692	0.00256	5.7596	0.0031579	548.2813369207664	24.43	0.14466	24.43	24.43	24.574	0	1215	79	0.8891654	0.047837377	0.8891654	360.62897	0	19.401947						167	7	2	NaN	NaN	NaN	0.70677	1	12608	12608		7.5876	0.72439	1	32842	+		9879	11307	5739	5858	7808	7808					-0.00045920637035123946
IDNTFMTATG	10	Unmodified	_IDNTFMTATG_					0	0	0			REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7447817676	2	535.744782	1069.47501	1.9468	0.001043	-4.8065	-0.0025751	-2.8597	-0.0015321	536.2431942222019	19.132	0.16789	19.132	19.036	19.204	0	1275	49	0.85233563	0.029502094	0.85233563	345.79227	0	11.968964						170	8	4	NaN	NaN	NaN	0.67523	1	11521	11521		9.746	0.78402	1	19492	+		9880	13470	5740	5859	7809	7809					-0.056947902877027445
IDNTFMTATG	10	Unmodified						0	0	0			REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	REV__tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.744782	1069.47501	1.9468	0.001043	-4.8065	-0.0025751	-2.8597	-0.0015321	536.2431942222019	19.132	0.16789	19.132	19.036	19.204	0	1275	49	0.85233563	0.029502094	0.85233563	345.79227		11.968964	0.0081856	-0.0007012	0.0016815	NaN	9.746	170	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19492	+		9881	13470	5740	5859							-0.056947902877027445
IDPFKLLAR	9	Unmodified	_IDPFKLLAR_					0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.8293090972501	2	536.829309	1071.64407	0.94836	0.00050911	-10.639	-0.0057112	-9.6905	-0.0052021	536.8235263350609	27.084	0.096537	27.074	27.025	27.122	-0.010124	1176	46	0.9130621	0.027558208	0.91154265	370.41946	0	11.180084						87	5	2	NaN	NaN	NaN	0.61852	1	11339	11339		4.7291	0.31598	1	10293	+		9882	8425	5741	5860	7810	7810					0.11110899127993434
IDPFKLLAR	9	Unmodified						0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.829309	1071.64407	1.5101	0.00081067	-11.324	-0.006079	-9.8138	-0.0052684	536.8235180453385	27.06	0.07242	27.06	27.012	27.084	0	1179	37	0.9112251	0.022045374	0.9112251	369.6742		8.9436035	-0.0066295	-0.00031781	-0.00015879	NaN	4.7291	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10848	+		9883	8425	5741	5860							0.11110899127993434
IDPFKLLAR	9	Unmodified						0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.829309	1071.64407	0.94836	0.00050911	-10.639	-0.0057112	-9.6905	-0.0052021	536.8235263350609	27.084	0.096537	27.074	27.025	27.122	-0.010124	1176	46	0.9130621	0.027558208	0.91154265	370.41946		11.180084	0.0066295	0.00041778	0.00015879	NaN	4.7291	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10293	+		9884	8425	5741	5860							0.11110899127993434
IDPIYEDRIYQ	11	Unmodified	_IDPIYEDRIYQ_					0	0	0		CTNND2|p.V428I|1|0.23|ENSG00000169862|chr5:11364786-11364786|C/T|missense_variant	CTNND2|p.V428I|1|0.23|ENSG00000169862|chr5:11364786-11364786|C/T|missense_variant	CTNND2|p.V428I|1|0.23|ENSG00000169862|chr5:11364786-11364786|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	712.8564490945001	2	712.856449	1423.69835	0.76586	0.00054595	2.1329	0.0015205	2.8988	0.0020664	712.8574679510506	32.706	0.19307	32.703	32.631	32.824	-0.0031052	1002	58	1.0192708	0.034689546	1.0177513	412.20688	0	14.0289						215	9	3	NaN	NaN	NaN	0.7072	1	19284	19284		6.9844	1.7955	1	19678			9885	236	5742	5861	7811	7811					0.0034440169824847544
IDPLSRNLS	9	Unmodified	_IDPLSRNLS_					0	0	0			REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.7825558699	2	507.782556	1013.55056	1.7345	0.00088073	1.9441	0.00098718	3.6786	0.0018679	507.7840919054752	21.585	0.09635	21.585	21.561	21.657	0	1323	43	0.8228144	0.025850594	0.8228144	334.0496	0	10.494934						102	5	3	NaN	NaN	NaN	0.16171	1	9133	9133		27.789	0	1	11623	+		9886	10342	5743	5862	7812	7812					0.04432554954905754
IDPLSRNLS	9	Unmodified						0	0	0			REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.782556	1013.55056	1.7345	0.00088073	1.9441	0.00098718	3.6786	0.0018679	507.7840919054752	21.585	0.09635	21.585	21.561	21.657	0	1323	43	0.8228144	0.025850594	0.8228144	334.0496		10.494934	-0.0051657	-0.00086206	-0.00016357	NaN	27.789	102	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11623	+		9887	10342	5743	5862							0.04432554954905754
IDPVEVLLI	9	Unmodified	_IDPVEVLLI_					0	0	0			REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.6132248871003	1	1010.61322	1009.60595	1.6452	0.0016626	-0.83634	-0.00084522	0.80881	0.0008174	1010.6121827051659	36.35	0.217	36.35	36.278	36.495	0	168	100	1.5192716	0.058493376	1.5192716	308.42035	0	11.874481						458	10	4	NaN	NaN	NaN	0.032764	1	8976	8976		55.494	0	1	78894	+		9888	10369	5744	5863	7813	7813					0.10152968422676167
IDPVEVLLI	9	Unmodified						0	0	0			REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1010.61322	1009.60595	1.6452	0.0016626	-0.83634	-0.00084522	0.80881	0.0008174	1010.6121827051659	36.35	0.217	36.35	36.278	36.495	0	168	100	1.5192716	0.058493376	1.5192716	308.42035		11.874481	4.9137E-05	-0.00028356	-0.00012626	NaN	55.494	458	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78894	+		9889	10369	5744	5863							0.10152968422676167
IDPVEVLLI	9	Unmodified						0	0	0			REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	REV__nc|ENSG00000165125|Q9H1D0-2|TRPV6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1010.61322	1009.60595	1.9064	0.0019267	-0.3107	-0.000314	1.5957	0.0016127	1010.6130672175126	36.348	0.24084	36.35	36.278	36.519	0.0016747	165	106	1.5210435	0.062031865	1.5195241	308.7801		12.592804	-4.9137E-05	0.00024766	0.00012626	NaN	55.494	439	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77192	+		9890	10369	5744	5863							0.10152968422676167
IDPVFGSIFR	10	Unmodified	_IDPVFGSIFR_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.2133579470334	3	384.213358	1149.61824	1.4866	0.00057119	-0.39993	-0.00015366	1.0867	0.00041753	384.2131843462554	22.886	0.14469	22.872	22.824	22.969	-0.01354	1473	67	0.7302302	0.04084766	0.7287108	443.98242	0	24.83548						240	7	3	NaN	NaN	NaN	0.56921	1	14291	14291		9.5705	1.2167	1	31848			9891	5587	5745	5864	7814	7814					0.04942004885720053
IDPVFGSIFR	10	Unmodified						0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	384.213358	1149.61824	1.7195	0.00066064	-0.99551	-0.00038249	0.72394	0.00027815	384.2127318636478	22.79	0.096451	22.79	22.742	22.838	0	1473	70	0.7302302	0.04270202	0.7302302	443.98242		25.962952	-0.041082	-0.00021225	0.00075972	NaN	9.5705	189	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28806			9892	5587	5745	5864							0.04942004885720053
IDPVLLDLL	9	Unmodified	_IDPVLLDLL_					0	0	0			REV__ENST00000481071.1_1_2:242162779-242163565:+|nuORF	REV__ENST00000481071.1_1_2:242162779-242163565:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.6132248871003	1	1010.61322	1009.60595	1.9064	0.0019267	-0.3107	-0.000314	1.5957	0.0016127	1010.6130672175126	36.348	0.24084	36.35	36.278	36.519	0.0016747	165	106	1.5210435	0.062031865	1.5195241	308.7801	0	12.592804						439	11	3	NaN	NaN	NaN	0.036546	1	8803	8803		52.624	5.4883	1	77192	+		9893	9939	5746	5865	7815	7815					0.10152968422676167
IDPYSLTFP	9	Unmodified	_IDPYSLTFP_					0	0	0			REV__ENST00000299427.10_2_11:6635118-6635532:-|nuORF	REV__ENST00000299427.10_2_11:6635118-6635532:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5298891882	1	1052.52989	1051.52261	1.3765	0.0014489	0.94213	0.00099162	2.3187	0.0024405	1052.531967045607	33.721	0.16888	33.721	33.576	33.745	0	108	64	1.5546752	0.037144184	1.5546752	315.43793	0	7.536438						128	8	2	NaN	NaN	NaN	0.20577	1	10686	10686		24.961	4.4056	1	10993	+		9894	11643	5747	5866	7816	7816					-0.0010876802518851036
IDQSPVPG	8	Unmodified	_IDQSPVPG_					0	0	0			REV__ENSG00000196642|ENST00000311502|RABL6	REV__ENSG00000196642|ENST00000311502|RABL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.4148594304002	1	812.414859	811.407583	1.9869	0.0016142	-0.22631	-0.00018386	1.7606	0.0014303	812.4151663243499	26.553	0.04826	26.542	26.542	26.59	-0.010645	513	67	1.3142352	0.039452434	1.3127158	267.6732	0	8.035339						67	3	2	NaN	NaN	NaN	0.6053	1	4811	4811		24.961	1.6266	1	4123.9	+		9895	11113	5748	5867	7817	7817					-0.005664524363169221
IDSAVCVLDI	10	Unmodified	_IDSAVCVLDI_					0	0	0			REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF	REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2731750663	2	524.273175	1046.5318	2.1005	0.0011012	-11.671	-0.0061187	-9.5703	-0.0050175	524.2674736495828	18.077	0.28778	18.077	18.029	18.316	0	1404	43	0.77288127	0.025929153	0.77288127	313.64508	0	10.522369						337	13	3	NaN	NaN	NaN	0.69717	1	10479	10479		8.2448	1.3816	1	103530	+		9896	12922	5749	5868	7818	7818					0.01039257268826077
IDSYAITIL	9	Unmodified	_IDSYAITIL_					0	0	0			REV__ENSG00000164953|ENST00000453321|TMEM67	REV__ENSG00000164953|ENST00000453321|TMEM67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5611893166	1	1008.56119	1007.55391	1.8893	0.0019055	-0.13866	-0.00013985	1.7507	0.0017656	1008.5608625892756	28.991	0.28963	28.991	28.894	29.184	0	162	154	1.5228153	0.09046614	1.5228153	309.14822	0	18.365631						752	13	4	NaN	NaN	NaN	0.018156	1	8899	8899		74.332	6.2236	1	247560	+		9897	10360	5750	5869	7819	7819					0.05043805008892832
IDSYAITIL	9	Unmodified						0	0	0			REV__ENSG00000164953|ENST00000453321|TMEM67	REV__ENSG00000164953|ENST00000453321|TMEM67	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.56119	1007.55391	1.8893	0.0019055	-0.13866	-0.00013985	1.7507	0.0017656	1008.5608625892756	28.991	0.28963	28.991	28.894	29.184	0	162	154	1.5228153	0.09046614	1.5228153	309.14822		18.365631	0.004228	0.00038535	-0.00012607	NaN	74.332	752	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247560	+		9898	10360	5750	5869							0.05043805008892832
IDTWSPSEWQM	11	Unmodified	_IDTWSPSEWQM_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3004524493001	2	690.300452	1378.58635	1.8727	0.0012927	-1.5571	-0.0010749	0.31563	0.00021788	690.2995643886536	29.86	0.14478	29.86	29.811	29.956	0	1098	55	0.960755	0.032968342	0.960755	388.6646	0	13.337036						248	7	4	NaN	NaN	NaN	0.64656	1	19876	19876		10.965	3.3775	1	28235			9899	4377	5751	5870	7820	7820					-0.08779775650396004
IDTWSPSEWQM	11	Unmodified	_IDTWSPSEWQM_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3004524493001	2	690.300452	1378.58635	0.98597	0.00068062	-0.66722	-0.00046058	0.31875	0.00022003	690.2994292279233	29.859	0.12064	29.852	29.803	29.924	-0.0070648	1095	46	0.9625867	0.027475119	0.96106726	389.4056	0	11.114807						208	6	4	NaN	NaN	NaN	0.012826	1	18939	18939		66.544	29.313	1	26113			9900	4377	5751	5870	7821	7821					-0.08779775650396004
IDTWSPSEWQM	11	Oxidation (M)	_IDTWSPSEWQM(Oxidation (M))_		IDTWSPSEWQM(1)		IDTWSPSEWQM(61)	0	0	1		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.2979097603501	2	698.29791	1394.58127	1.6819	0.0011744	3.9322	0.0027459	5.6141	0.0039203	698.8045527305113	26.046	0.28964	26.035	25.938	26.228	-0.011135	1098	88	0.960755	0.053112805	0.9592356	388.62033	0	21.483887						396	13	4	NaN	NaN	NaN	0.021881	1	19078	19078		61.199	48.196	1	60278			9901	4377	5751	5871	7822	7822		467			-0.10024079513027573
IDVLNSIEP	9	Unmodified	_IDVLNSIEP_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.2714896571	2	500.27149	998.528426	1.0766	0.0005386	-0.78691	-0.00039367	0.2897	0.00014493	500.27103786777366	22.018	0.096277	22.004	21.956	22.053	-0.013895	1308	64	0.83204526	0.038752913	0.8305259	337.86523	0	15.736237						121	5	2	NaN	NaN	NaN	0.39244	1	8344	8344		14.042	0.57854	1	12418	+		9902	9735	5752	5872	7823	7823					0.02910330486474777
IDVLNSIEP	9	Unmodified						0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.27149	998.528426	1.7542	0.00087759	-1.7314	-0.00086619	0.022793	1.1403E-05	500.2700705348726	22.019	0.19283	22.019	21.946	22.139	0	1308	55	0.83204526	0.03321141	0.83204526	337.86526		13.485992	0.0070688	-0.00033156	0.00075972	NaN	14.042	202	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15149	+		9903	9735	5752	5872							0.02910330486474777
IDVLNSIEP	9	Unmodified						0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.27149	998.528426	1.0766	0.0005386	-0.78691	-0.00039367	0.2897	0.00014493	500.27103786777366	22.018	0.096277	22.004	21.956	22.053	-0.013895	1308	64	0.83204526	0.038752913	0.8305259	337.86523		15.736237	-0.0070688	0.00061349	-0.00075972	NaN	14.042	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12418	+		9904	9735	5752	5872							0.02910330486474777
IDVNGGAP	8	Unmodified	_IDVNGGAP_					0	0	0			REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3729946157001	1	742.372995	741.365718	1.7083	0.0012682	4.7696	0.0035409	6.478	0.0048091	742.3761571772897	23.586	0.07226	23.586	23.562	23.634	0	591	76	1.26753	0.04495442	1.26753	258.56622	0	9.170364						205	4	3	NaN	NaN	NaN	0.80071	1	3939	3939		9.1232	0	1	27724	+		9905	11999	5753	5873	7824	7824					-0.015310081248458118
IDVNGGAP	8	Unmodified						0	0	0			REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	742.372995	741.365718	1.7083	0.0012682	4.7696	0.0035409	6.478	0.0048091	742.3761571772897	23.586	0.07226	23.586	23.562	23.634	0	591	76	1.26753	0.04495442	1.26753	258.56622		9.170364	-0.0053765	0.00019004	0.00075972	NaN	9.1232	205	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27724	+		9906	11999	5753	5873							-0.015310081248458118
IDVNGGAP	8	Unmodified						0	0	0			REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	REV__ENST00000394752.7_1_3:52938917-52939094:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	742.372995	741.365718	1.9572	0.001453	4.1988	0.0031171	6.1561	0.0045701	742.3758962812691	23.609	0.072374	23.596	23.548	23.621	-0.013048	591	79	1.26753	0.04675007	1.2660105	258.56622		9.536667	0.0053765	-0.00023371	-0.00075972	NaN	9.1232	140	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24318	+		9907	11999	5753	5873							-0.015310081248458118
IDVPNLVI	8	Unmodified	_IDVPNLVI_					0	0	0			REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.76838586214996	2	441.768386	881.522219	0.78166	0.00034531	-1.273	-0.00056236	-0.49133	-0.00021705	441.76781993472474	31.234	0.12069	31.229	31.181	31.302	-0.0050716	1380	70	0.7876915	0.042540252	0.78617203	320.431	0	17.305267						266	6	3	NaN	NaN	NaN	0.11528	1	5705	5705		61.271	14.135	1	63416	+		9908	12551	5754	5874	7825	7825					0.07671857045602337
IDVPNLVI	8	Unmodified						0	0	0			REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	441.768386	881.522219	0.36393	0.00016077	-1.0443	-0.00046135	-0.68039	-0.00030058	441.7676805694636	31.235	0.16892	31.235	31.187	31.356	0	1380	67	0.7876915	0.040692866	0.7876915	320.431		16.553772	0.0030577	0.00012935	0.00075972	NaN	61.271	211	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36934	+		9909	12551	5754	5874							0.07671857045602337
IDVPNLVI	8	Unmodified						0	0	0			REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	REV__ENST00000509421.1_1_4:4896340-4896505:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	441.768386	881.522219	0.78166	0.00034531	-1.273	-0.00056236	-0.49133	-0.00021705	441.76781993472474	31.234	0.12069	31.229	31.181	31.302	-0.0050716	1380	70	0.7876915	0.042540252	0.78617203	320.431		17.305267	-0.0030577	-7.2687E-05	-0.00075972	NaN	61.271	266	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63416	+		9910	12551	5754	5874							0.07671857045602337
IDYHEIEQ	8	Unmodified	_IDYHEIEQ_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7430963584	2	523.743096	1045.47164	1.6906	0.00088545	2.9155	0.001527	4.6062	0.0024124	523.7447054412638	25.298	0.072353	25.286	25.262	25.334	-0.012011	1302	55	0.8357362	0.033207774	0.8342168	339.15683	0	13.476288						97	4	2	NaN	NaN	NaN	0.77489	1	10221	10221		12.588	0.53918	1	15761	+		9911	11089;13206	5755	5875	7826	7826					-0.04927717070063409
IDYNEEFRLFL	11	Unmodified	_IDYNEEFRLFL_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.86681681555	2	729.866817	1457.71908	0.96123	0.00070157	-9.5945	-0.0070027	-8.6333	-0.0063011	729.8595557885983	34.107	0.19299	34.107	34.083	34.276	0	1020	46	1.0083145	0.027401268	1.0083145	407.68445	0	11.078918						246	9	4	NaN	NaN	NaN	0.44296	1	20415	20415		20.513	4.6914	1	30998			9912	5501	5756	5876	7827	7827					0.008529920778983069
IDYNEEFRLFL	11	Unmodified						0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	729.866817	1457.71908	1.0766	0.00078574	-10.157	-0.0074131	-9.0802	-0.0066274	729.8592316216452	34.154	0.16895	34.153	34.105	34.274	-0.0012474	1017	49	1.010141	0.029226363	1.0086216	408.42297		11.816895	0.022889	-0.00044461	0.00015356	NaN	20.513	245	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29433			9913	5501	5756	5876							0.008529920778983069
IDYRKHFC	8	Unmodified	_IDYRKHFC_					0	0	0		ENST00000453779.6_1_6:163990307-163990376:+|nuORF	ENST00000453779.6_1_6:163990307-163990376:+|nuORF	ENST00000453779.6_1_6:163990307-163990376:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2660187362001	2	541.266019	1080.51748	0.98776	0.00053464	5.5576	0.0030081	6.5453	0.0035428	541.2689944361235	32.755	0.19302	32.752	32.703	32.896	-0.0031013	1236	49	0.876284	0.029451072	0.8747646	355.46188	0	11.946747						160	9	3	NaN	NaN	NaN	0.84455	1	11683	11683		2.7852	0.32367	1	17048			9914	7051	5757	5877	7828	7828					-0.019553503688030105
IEAADVVLI	9	Unmodified	_IEAADVVLI_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000165240|Q04656-4|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000123191|P35670-2|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246303001	1	942.550625	941.543348	1.8985	0.0017895	-1.2474	-0.0011758	0.65113	0.00061372	942.5498237320058	28.05	0.26545	28.05	28.026	28.291	0	288	76	1.4482387	0.044487596	1.4482387	294.28647	0	9.040009						386	12	4	NaN	NaN	NaN	0.094712	1	6852	6852		36.586	0	1	96808			9915	2365;4388	5758	5878	7829	7829					0.070238223544834
IEALRKPT	8	Unmodified	_IEALRKPT_					0	0	0		nc|ENSG00000160191|O76083-10|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENSG00000160191|ENST00000291539|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.28473441809996	2	464.284734	926.554916	1.2969	0.00060212	-1.381	-0.00064116	-0.084082	-3.9038E-05	464.2838391472186	22.79	0.072222	22.776	22.752	22.824	-0.01354	1311	28	0.83019954	0.016613781	0.8286801	337.47137	0	6.7533875						52	4	2	NaN	NaN	NaN	0.81756	1	6401	6401		6.8632	1.3974	1	3673.2			9916	4048	5759	5879	7830	7830					0.08870064168456793
IEALRKPT	8	Unmodified						0	0	0		nc|ENSG00000160191|O76083-10|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENSG00000160191|ENST00000291539|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	464.284734	926.554916	1.3994	0.00064971	-0.84382	-0.00039177	0.55555	0.00025793	464.2845284712148	22.766	0.048246	22.766	22.742	22.79	0	1314	34	0.8283535	0.020305753	0.8283535	336.721		8.25415	-0.0049588	0.00020849	-0.00016327	NaN	6.8632	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3615.2			9917	4048	5759	5879							0.08870064168456793
IEAMFRGGI	9	Unmodified	_IEAMFRGGI_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.2629447310001	2	497.262945	992.511337	2.0666	0.0010276	-1.7774	-0.00088386	0.28911	0.00014376	497.26208511316196	18.362	0.024012	18.348	18.324	18.348	-0.013948	1317	46	0.8265074	0.027698576	0.82498795	335.64413	0	11.248383						43	2	2	NaN	NaN	NaN	0.10956	1	8150	8150		34.439	5.7723	1	5459.7			9918	2960	5760	5880	7831	7831					0.01478131399699123
IEASSEYSFM	10	Unmodified	_IEASSEYSFM_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-4|HM13	REV__nc|ENSG00000101294|Q8TCT9-4|HM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.24989693525	2	582.249897	1162.48524	1.1369	0.00066194	-1.4665	-0.00085388	-0.32966	-0.00019195	582.250933660041	31.573	0.14487	31.573	31.525	31.67	0	1215	40	0.8891654	0.023917377	0.8891654	360.36685	0	9.69339						90	7	3	NaN	NaN	NaN	0.72631	1	15221	15221		6.2502	0	1	7047.1	+		9919	8849	5761	5881	7832	7832					-0.08950227353125229
IEAYELLL	8	Unmodified	_IEAYELLL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.5397255930001	1	963.539726	962.532449	1.2315	0.0011866	0.46127	0.00044445	1.6928	0.001631	963.5404659755493	34.66	0.12053	34.66	34.612	34.732	-0.00064468	237	58	1.4784646	0.03374958	1.4769452	300.33398	0	6.8558655						204	6	3	NaN	NaN	NaN	0.30832	1	7256	7256		41.46	0	1	22087			9920	4780	5762	5882	7833	7833					0.04968419980184535
IECSVSIFS	9	Unmodified	_IECSVSIFS_					0	0	0			REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.7389681082001	2	492.738968	983.463383	0.88615	0.00043664	5.5759	0.0027474	6.462	0.0031841	492.7413684295938	14.452	0.047899	14.441	14.393	14.441	-0.011218	1347	49	0.8080346	0.029569209	0.8065152	328.1836	0	12.0095215						60	3	2	NaN	NaN	NaN	0.56671	1	7825	7825		6.8632	0	1	9160.8	+		9921	11771	5763	5883	7834	7834					-0.029009873110112494
IECSVSIFS	9	Unmodified						0	0	0			REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.738968	983.463383	1.4719	0.00072528	5.7911	0.0028535	7.263	0.0035788	492.7423114366201	14.501	0.21585	14.501	14.405	14.621	0	1350	58	0.80618626	0.035111487	0.80618626	327.4329		14.260559	0.030136	0.00012238	-0.00016447	NaN	6.8632	118	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19533	+		9922	11771	5763	5883							-0.029009873110112494
IECSVSIFS	9	Unmodified						0	0	0			REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	REV__ENST00000434935.6_1_16:71319833-71323083:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.738968	983.463383	0.88615	0.00043664	5.5759	0.0027474	6.462	0.0031841	492.7413684295938	14.452	0.047899	14.441	14.393	14.441	-0.011218	1347	49	0.8080346	0.029569209	0.8065152	328.1836		12.0095215	-0.030136	-8.9734E-05	0.00016447	NaN	6.8632	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9160.8	+		9923	11771	5763	5883							-0.029009873110112494
IEDIEFFLT	9	Unmodified	_IEDIEFFLT_					0	0	0		tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.19374051939997	3	376.193741	1125.55939	2.217	0.00083402	1.6479	0.00061994	3.8649	0.001454	376.1948864462502	18.58	0.072044	18.58	18.556	18.628	0	1458	37	0.7395112	0.022268474	0.7395112	449.739	0	13.542694						64	4	2	NaN	NaN	NaN	0.56671	1	13904	13904		3.9281	1.59	1	7768.5			9924	13834	5764	5884	7835	7835					0.001634838007248618
IEDIEFFLT	9	Unmodified						0	0	0		tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	376.193741	1125.55939	2.1539	0.00081027	3.8667	0.0014546	6.0206	0.0022649	376.1951701309333	18.746	0.11996	18.731	18.66	18.78	-0.014059	1455	34	0.7413668	0.020409405	0.73984736	450.8675		12.412109	0.075584	0.0012421	0.00016808	NaN	3.9281	73	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6119.2			9925	13834	5764	5884							0.001634838007248618
IEDMLAQLF	9	Unmodified	_IEDMLAQLF_					0	0	0			REV__ENST00000489156.1_1_6:152599163-152623219:-|nuORF	REV__ENST00000489156.1_1_6:152599163-152623219:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.5441590438998	1	1079.54416	1078.53688	1.2683	0.0013692	6.4473	0.0069602	7.7156	0.0083294	1079.5515586071738	33.864	0.16895	33.863	33.718	33.887	-0.0018463	81	91	1.5705823	0.053026676	1.5690628	318.562	0	10.755432						250	8	2	NaN	NaN	NaN	0.20577	1	11609	11609		24.961	1.6266	1	41807	+		9926	12448	5765	5885	7836	7836					0.0007556113143891707
IEEHAFQVL	9	Unmodified	_IEEHAFQVL_					0	0	0		nc|ENSG00000172468|Q96LI6-2|HSFY1;nc|ENSG00000172468|Q96LI6-3|HSFY1;ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	nc|ENSG00000172468|Q96LI6-2|HSFY1	nc|ENSG00000172468|Q96LI6-2|HSFY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5625863001	1	1085.56259	1084.55531	1.1112	0.0012063	-3.4359	-0.0037299	-2.3247	-0.0025236	1085.5597087534734	27.228	0.07239	27.218	27.194	27.267	-0.010124	84	79	1.5688156	0.045951605	1.5672961	318.1814	0	9.319733						148	4	2	NaN	NaN	NaN	0.12328	1	11852	11852		32.453	3.5572	1	17770			9927	4705	5766	5886	7837	7837					0.016414390976706272
IEEIEDRETL	10	Unmodified	_IEEIEDRETL_					0	0	0		KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8117072398501	2	623.811707	1245.60886	1.4628	0.00091252	1.7254	0.0010763	3.1882	0.0019888	623.812239556329	24.719	0.24126	24.719	24.647	24.888	0	1161	85	0.9222442	0.051389337	0.9222442	373.48062	0	20.811096						252	11	2	NaN	NaN	NaN	0.22448	1	17652	17652		33.425	2.2273	1	59638			9928	7834	5767	5887	7838	7838					-0.004118529811194094
IEEIEDRETL	10	Unmodified						0	0	0		KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	KIF13A|p.T1315I|1|0.33|ENSG00000137177|chr6:17779095-17779095|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.811707	1245.60886	0.86835	0.00054169	3.0443	0.0018991	3.9127	0.0024408	624.315465541529	24.719	0.21714	24.707	24.682	24.9	-0.012392	1161	73	0.9222442	0.04405749	0.92072475	373.48062		17.84195	-0.0062687	0.0010162	-0.00075972	NaN	33.425	257	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57318			9929	7834	5767	5887							-0.004118529811194094
IEEKSNVEL	9	Unmodified	_IEEKSNVEL_					0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7796788299501	2	530.779679	1059.5448	1.2629	0.0006703	-7.0932	-0.0037649	-5.8303	-0.0030946	530.7749422440199	17.234	0.11985	17.22	17.149	17.268	-0.013569	1248	85	0.8689189	0.05159515	0.86739945	352.5621	0	20.934631						170	6	3	NaN	NaN	NaN	0.16939	1	10834	10834		27.296	5.5252	1	19799	+		9930	13574	5768	5888	7839	7839					0.01741411652574243
IEEKSNVEL	9	Unmodified						0	0	0			REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	REV__tr|U7T1G2|U7T1G2_FUSNUPTSsystem,nitrogenregulatoryIIAcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00633PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.779679	1059.5448	1.2629	0.0006703	-7.0932	-0.0037649	-5.8303	-0.0030946	530.7749422440199	17.234	0.11985	17.22	17.149	17.268	-0.013569	1248	85	0.8689189	0.05159515	0.86739945	352.5621		20.934631	0.015454	-3.7803E-05	-0.0026012	NaN	27.296	170	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19799	+		9931	13574	5768	5888							0.01741411652574243
IEELHQTYME	10	Unmodified	_IEELHQTYME_					0	0	0		ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.79500293065	2	646.795003	1291.57545	1.1807	0.00076367	-2.5377	-0.0016414	-1.357	-0.00087772	646.7947378635898	30.897	0.28957	30.897	30.68	30.97	0	1122	52	0.9460945	0.031172097	0.9460945	382.98975	0	12.618805						208	13	3	NaN	NaN	NaN	0.41164	1	18611	18611		23.118	0	1	20112			9932	2390	5769	5889	7840	7840					-0.05867178024709574
IEELHQTYME	10	Unmodified						0	0	0		ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	ENSG00000124003|ENST00000446656|MOGAT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	646.795003	1291.57545	1.3732	0.00088821	-5.037	-0.0032579	-3.6637	-0.0023697	646.7924240410963	30.92	0.21723	30.915	30.771	30.988	-0.0050716	1122	64	0.9460945	0.038506687	0.9445751	382.98978		15.587921	0.0090049	-0.0015258	-0.00075972	NaN	23.118	231	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22492			9933	2390	5769	5889							-0.05867178024709574
IEELIQPAL	9	Unmodified	_IEELIQPAL_					0	0	0			REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.29750744235	2	513.297507	1024.58046	1.0872	0.00055804	-2.4674	-0.0012665	-1.3803	-0.00070848	513.2961855227384	30.607	0.072392	30.601	30.577	30.649	-0.0057545	1287	37	0.8449601	0.022131324	0.84344065	342.99094	0	8.983673						61	4	2	NaN	NaN	NaN	0.39244	1	9386	9386		14.042	1.7819	1	6900.5	+		9934	9981	5770	5890	7841	7841					0.0691549390023738
IEENSTLHEQ	10	Unmodified	_IEENSTLHEQ_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2805742869501	2	600.280574	1198.5466	1.4033	0.00084235	-9.9051	-0.0059458	-8.5018	-0.0051035	600.2752702652905	20.045	0.048054	20.045	20.021	20.069	0	1185	37	0.90755045	0.022050142	0.90755045	367.6883	0	8.933472						57	3	2	NaN	NaN	NaN	0.63397	1	16414	16414		12.57	0.52101	1	8163.2	+		9935	10125	5771	5891	7842	7842					-0.04473579329464883
IEESGFFEM	9	Oxidation (M)	_IEESGFFEM(Oxidation (M))_		IEESGFFEM(1)		IEESGFFEM(42)	0	0	1		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.4554036161	1	1104.4554	1103.44813	1.4119	0.0015594	0.71685	0.00079173	2.1288	0.0023511	1104.4569913876794	24.767	0.21711	24.755	24.731	24.948	-0.012392	153	70	1.5281296	0.040729165	1.5266101	309.86288	0	8.258759						305	10	4	NaN	NaN	NaN	0.062072	1	12624	12624		41.785	6.488	1	36054			9936	344	5772	5892	7843	7843		31			-0.09945898898854466
IEETLSHFN	9	Unmodified	_IEETLSHFN_					0	0	0		tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	tr|U7T8K2|U7T8K2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00080PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2641959412501	2	545.264196	1088.51384	1.3375	0.00072932	-9.7281	-0.0053044	-8.3905	-0.004575	545.2601092746551	30.004	0.072393	29.997	29.973	30.045	-0.0064106	1254	52	0.8652351	0.03131038	0.86371565	350.9475	0	12.699799						71	4	2	NaN	NaN	NaN	0.54912	1	12000	12000		7.5876	0.047225	1	6220.7			9937	14011	5773	5893	7844	7844					-0.02687741661657128
IEEWDLVL	8	Unmodified	_IEEWDLVL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5298891882	1	1016.52989	1015.52261	2.1291	0.0021643	0.33358	0.0003391	2.4627	0.0025034	1016.5303208954224	28.725	0.072399	28.725	28.701	28.774	0	192	55	1.5050892	0.03192067	1.5050892	305.51724	0	6.479553						133	4	3	NaN	NaN	NaN	0.54545	1	9198	9198		28.667	1.935	1	13895			9938	7939	5774	5894	7845	7845					0.015472319748027985
IEFDDEIL	8	Unmodified	_IEFDDEIL_					0	0	0			REV__tr|U7T6D9|U7T6D9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00188PE=4SV=1	REV__tr|U7T6D9|U7T6D9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00188PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4775192667001	1	993.477519	992.470243	1.6616	0.0016507	-1.1006	-0.0010934	0.56101	0.00055735	993.4750902373743	28.507	0.31369	28.499	28.378	28.692	-0.0083485	246	145	1.4731345	0.08527565	1.4716152	299.12384	0	17.31546						704	14	3	NaN	NaN	NaN	0.54545	1	8139	8139		28.667	1.935	1	168400	+		9939	13627	5775	5895	7846	7846					-0.026293511587937246
IEFKHNLVVIA	11	Unmodified	_IEFKHNLVVIA_					0	0	0			REV__ENSG00000026652|ENST00000320285|AGPAT4	REV__ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8795302603002	2	641.87953	1281.74451	1.5203	0.00097584	1.1407	0.00073218	2.661	0.001708	641.880281605441	32.658	0.19308	32.655	32.583	32.776	-0.0031052	1059	85	0.98455137	0.051206768	0.9830319	398.58987	0	20.730774						287	9	2	NaN	NaN	NaN	0.77466	1	17638	17638		1.1768	0.25095	1	33980	+		9940	8437	5776	5896	7847	7847					0.11490511391002656
IEFKHNLVVIA	11	Unmodified						0	0	0			REV__ENSG00000026652|ENST00000320285|AGPAT4	REV__ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	641.87953	1281.74451	1.5448	0.00099157	2.3048	0.0014794	3.8495	0.0024709	641.8814244679493	32.683	0.14481	32.683	32.587	32.732	0	1068	76	0.97906286	0.04572779	0.97906286	396.36786		18.512634	0.014155	0.00076937	-0.0019845	NaN	1.1768	240	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26987	+		9941	8437	5776	5896							0.11490511391002656
IEFKHNLVVIA	11	Unmodified						0	0	0			REV__ENSG00000026652|ENST00000320285|AGPAT4	REV__ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	641.87953	1281.74451	1.5203	0.00097584	1.1407	0.00073218	2.661	0.001708	641.880281605441	32.658	0.19308	32.655	32.583	32.776	-0.0031052	1059	85	0.98455137	0.051206768	0.9830319	398.58987		20.730774	-0.014155	-0.00072502	0.0019845	NaN	1.1768	287	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33980	+		9942	8437	5776	5896							0.11490511391002656
IEGGAALVIL	10	Unmodified	_IEGGAALVIL_					0	0	0		tr|U7SRH1|U7SRH1_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01659PE=4SV=1	tr|U7SRH1|U7SRH1_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01659PE=4SV=1	tr|U7SRH1|U7SRH1_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01659PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.29476778814995	2	478.294768	954.574983	1.8426	0.00088132	-3.5667	-0.0017059	-1.7241	-0.00082461	478.29372201327584	22.477	0.21685	22.477	22.405	22.621	0	1314	61	0.8283535	0.03692949	0.8283535	336.57657	0	15.005188						349	10	4	NaN	NaN	NaN	0.2358	1	7207	7207		32.453	6.3378	1	107450			9943	13817	5777	5897	7848	7848					0.09587815108409359
IEGGAKLC	8	Unmodified	_IEGGAKLC_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.4127509404	1	790.412751	789.405474	1.6432	0.0012988	-4.7188	-0.0037298	-3.0756	-0.002431	790.4085866119975	27.326	0.096579	27.326	27.302	27.398	0	495	52	1.3249949	0.03048098	1.3249949	269.98984	0	6.2109985						68	5	2	NaN	NaN	NaN	0.84455	1	4620	4620		2.7852	0	1	5759.7			9944	2999	5778	5898	7849	7849					0.0023479555419498865
IEGMEFGP	8	Unmodified	_IEGMEFGP_					0	0	0		ENSG00000123933|ENST00000337190|MXD4;ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENSG00000123933|ENST00000337190|MXD4	ENSG00000123933|ENST00000337190|MXD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.3916811473001	1	879.391681	878.384405	1.7313	0.0015225	-7.9952	-0.0070309	-6.2639	-0.0055084	879.3845214121935	56.085	0.048046	56.085	56.061	56.109	0	381	58	1.3929803	0.03392577	1.3929803	283.35104	0	6.9009705						78	3	2	NaN	NaN	NaN	0.84455	1	5774	5774		2.7852	1.3456	1	10748			9945	2388	5779	5899	7850	7850					-0.05965214545301478
IEGMEFGP	8	Unmodified						0	0	0		ENSG00000123933|ENST00000337190|MXD4;ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENSG00000123933|ENST00000337190|MXD4	ENSG00000123933|ENST00000337190|MXD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	879.391681	878.384405	-0.3928	-0.00034542	-5.499	-0.0048358	-5.8918	-0.0051812	879.3868580671369	56.083	0.048054	56.082	56.058	56.106	-0.00056458	378	52	1.3947657	0.0303514	1.3932463	283.7142		6.173889	-0.0013502	0.0013163	0.00013297	NaN	2.7852	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10209			9946	2388	5779	5899							-0.05965214545301478
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7850985588501	2	541.785099	1081.55564	2.1922	0.0011877	-1.3076	-0.00070845	0.8846	0.00047926	541.7841592684136	21.44	0.26501	21.44	21.368	21.633	0	1260	127	0.8615505	0.07735932	0.8615505	349.48108	0	31.380188						1079	12	6	NaN	NaN	NaN	0.094712	1	12055	12055		36.586	6.9881	1	1019700			9947	3442	5780	5900	7851	7851					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTA2|p.D83N|1|0.16|ENSG00000107796|chr10:88947269-88947269|C/T|missense_variant	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7850985588501	2	541.785099	1081.55564	2.3213	0.0012576	-0.50911	-0.00027583	1.8121	0.00098179	541.7846260028043	21.464	0.26492	21.45	21.378	21.643	-0.014006	1260	121	0.8615505	0.073667586	0.8600311	349.48108	0	29.88266						1023	12	6	NaN	NaN	NaN	0.062072	1	11741	11741		41.785	9.3317	1	1006800			9948	3442	5780	5900	7852	7852					0.01812858817538654
IEHGIVTNW	9	Unmodified	_IEHGIVTNW_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.77727352675	2	534.777274	1067.53999	1.7646	0.00094369	-3.0278	-0.0016192	-1.2632	-0.00067551	534.7759676032432	21.2	0.072296	21.2	21.175	21.248	0	1290	37	0.84311575	0.022133768	0.84311575	342.05963	0	8.979858						54	4	2	NaN	NaN	NaN	0.49672	1	11443	11443		9.746	0	1	4821.1			9949	841	5781	5901	7853	7853					0.008925723004722386
IEHGIVTNW	9	Unmodified						0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.777274	1067.53999	1.2894	0.00068955	-8.2605	-0.0044175	-6.9711	-0.003728	534.7747675473423	20.911	0.048149	20.897	20.897	20.945	-0.014086	1254	37	0.8652351	0.022102654	0.86371565	351.0337		8.967224	-0.15138	-0.0037558	0.0103	NaN	9.746	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3369.4			9950	841	5781	5901							0.008925723004722386
IEIEKYLL	8	Unmodified	_IEIEKYLL_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.80242564475003	2	510.802426	1019.5903	1.8791	0.00095983	7.5451	0.0038541	9.4242	0.0048139	510.80747755839457	25.925	0.14482	25.914	25.865	26.01	-0.0116	1287	49	0.8449601	0.029505253	0.84344065	343.01315	0	11.977722						162	7	3	NaN	NaN	NaN	0.3042	1	9174	9174		41.785	6.488	1	28188	+		9951	10125	5782	5902	7854	7854					0.08128681905623125
IEIEKYLL	8	Unmodified						0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.802426	1019.5903	2.2853	0.0011674	7.3426	0.0037506	9.6279	0.004918	510.80686281348386	25.877	0.096512	25.877	25.853	25.95	0	1284	49	0.8468043	0.029502094	0.8468043	343.76178		11.97641	-0.018214	-6.0612E-05	0.0016818	NaN	41.785	146	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27557	+		9952	10125	5782	5902							0.08128681905623125
IEIEKYLL	8	Unmodified						0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.802426	1019.5903	1.8791	0.00095983	7.5451	0.0038541	9.4242	0.0048139	510.80747755839457	25.925	0.14482	25.914	25.865	26.01	-0.0116	1287	49	0.8449601	0.029505253	0.84344065	343.01315		11.977722	0.018214	0.00014631	-0.0016818	NaN	41.785	162	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28188	+		9953	10125	5782	5902							0.08128681905623125
IEKFEDEGAG	10	Unmodified	_IEKFEDEGAG_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7536610447	2	547.753661	1093.49277	1.2546	0.00068724	6.5133	0.0035677	7.7679	0.0042549	547.7578381982205	34.107	0.16891	34.107	34.059	34.228	0	1245	70	0.87076044	0.042342782	0.87076044	353.1685	0	17.173645						519	8	5	NaN	NaN	NaN	0.34693	1	12531	12531		25.801	1.4007	1	249390			9954	2720	5783	5903	7855	7855					-0.05023751761177664
IEKNVYKSGQN	11	Unmodified	_IEKNVYKSGQN_					0	0	0			REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.2262147306334	3	427.226215	1278.65681	1.4275	0.00060985	4.5531	0.0019452	5.9806	0.0025551	427.2286803456453	15.436	0.14386	15.424	15.352	15.496	-0.012202	1455	55	0.7413668	0.03338456	0.73984736	450.2148	0	20.273651						118	7	3	NaN	NaN	NaN	0.70989	1	17574	17574		6.8076	0.19016	1	7832.8	+		9955	9324	5784	5904	7856	7856					0.028632657295929675
IEKNVYKSGQN	11	Unmodified						0	0	0			REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	427.226215	1278.65681	1.3211	0.00056439	3.3579	0.0014346	4.6789	0.001999	427.2274014653839	15.198	0.096082	15.198	15.174	15.27	0	1455	43	0.7413668	0.025974154	0.7413668	450.2148		15.773529	-0.11313	-0.00057165	0.00075972	NaN	6.8076	102	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7247.5	+		9956	9324	5784	5904							0.028632657295929675
IEKNVYKSGQN	11	Unmodified						0	0	0			REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	427.226215	1278.65681	1.4275	0.00060985	4.5531	0.0019452	5.9806	0.0025551	427.2286803456453	15.436	0.14386	15.424	15.352	15.496	-0.012202	1455	55	0.7413668	0.03338456	0.73984736	450.2148		20.273651	0.11313	0.00096027	-0.00075972	NaN	6.8076	118	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7832.8	+		9957	9324	5784	5904							0.028632657295929675
IEKQVFVR	8	Unmodified	_IEKQVFVR_					0	0	0			REV__ALDH9A1|p.D326G|1|0.09|ENSG00000143149|chr1:165669404-165669404|T/C|missense_variant	REV__ALDH9A1|p.D326G|1|0.09|ENSG00000143149|chr1:165669404-165669404|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.8058340009501	2	509.805834	1017.59712	1.8801	0.00095847	-5.3918	-0.0027488	-3.5118	-0.0017903	509.8030264349278	29.522	0.21725	29.522	29.449	29.667	0	1260	145	0.8615505	0.08833426	0.8615505	349.75723	0	35.860382						676	10	3	NaN	NaN	NaN	0.84782	1	9290	9290		0.92586	0	1	122920	+		9958	8128	5785	5905	7857	7857					0.08902039576855714
IEKTVVLP	8	Unmodified	_IEKTVVLP_					0	0	0		nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.5607953861	1	898.560795	897.553519	1.2595	0.0011318	-0.54948	-0.00049374	0.71006	0.00063803	898.5598085564719	30.945	0.12068	30.94	30.891	31.012	-0.0050716	324	73	1.42687	0.042760253	1.4253505	290.14905	0	8.69516						179	6	2	NaN	NaN	NaN	0.38377	1	5916	5916		37.302	2.8636	1	27338			9959	2842	5786	5906	7858	7858					0.10064430079705744
IELENRLF	8	Unmodified	_IELENRLF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2874740723	2	517.287474	1032.5604	1.2619	0.00065275	-6.5293	-0.0033775	-5.2674	-0.0027248	517.7837652052787	21.344	0.096117	21.33	21.306	21.402	-0.014006	1299	82	0.8375814	0.04979825	0.83606195	339.9609	0	20.21231						190	5	3	NaN	NaN	NaN	0.55996	1	9688	9688		27.789	1.6739	1	28471	+		9960	11369	5787	5907	7859	7859					0.04541742960282136
IELIARIMSG	10	Unmodified	_IELIARIMSG_					0	0	0			REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.81808409645	2	551.818084	1101.62162	1.2574	0.00069383	-4.0087	-0.0022121	-2.7513	-0.0015182	551.8159287297846	24.478	0.19316	24.465	24.32	24.513	-0.012747	1215	61	0.8891654	0.03678602	0.88764596	360.6002	0	14.918518						286	9	3	NaN	NaN	NaN	0.76548	1	12582	12582		3.5698	0.35817	1	32614	+		9961	8494	5788	5908	7860	7860					0.07486931668040597
IELIARIMSG	10	Unmodified						0	0	0			REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.818084	1101.62162	0.99047	0.00054656	-5.1865	-0.002862	-4.196	-0.0023154	551.8154814523898	24.55	0.12054	24.55	24.43	24.55	0	1221	55	0.885486	0.033110976	0.885486	359.10803		13.428131	0.042626	-0.00090535	-0.00108	NaN	3.5698	114	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20274	+		9962	8494	5788	5908							0.07486931668040597
IELIARIMSG	10	Unmodified						0	0	0			REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	REV__POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	551.818084	1101.62162	1.2574	0.00069383	-4.0087	-0.0022121	-2.7513	-0.0015182	551.8159287297846	24.478	0.19316	24.465	24.32	24.513	-0.012747	1215	61	0.8891654	0.03678602	0.88764596	360.6002		14.918518	-0.042626	0.0003945	0.00108	NaN	3.5698	286	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32614	+		9963	8494	5788	5908							0.07486931668040597
IELYPQLQ	8	Unmodified	_IELYPQLQ_					0	0	0		tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.276575035	2	502.276575	1002.5386	1.1081	0.00055656	-1.45	-0.00072829	-0.34191	-0.00017173	502.27558222327673	27.687	0.28961	27.677	27.605	27.895	-0.009552	1287	67	0.8449601	0.040582895	0.84344065	343.09088	0	16.478424						451	13	5	NaN	NaN	NaN	0.49126	1	8524	8524		31.561	0	1	104880			9964	13937	5789	5909	7861	7861					0.03742938211712499
IENGSSSS	8	Unmodified	_IENGSSSS_					0	0	0		PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP	PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.3370030399001	1	780.337003	779.329727	1.4589	0.0011384	4.7984	0.0037444	6.2573	0.0048828	780.3405801189401	22.38	0.19256	22.366	22.318	22.511	-0.013733	549	52	1.292695	0.030533075	1.2911756	263.46634	0	6.222992						151	9	2	NaN	NaN	NaN	0.75561	1	4398	4398		15.175	3.6269	1	13940			9965	3557	5790	5910	7862	7862					-0.06876510092365606
IENPAIIY	8	Unmodified	_IENPAIIY_					0	0	0		tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	tr|U7SUE8|U7SUE8_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01129PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5087598156001	1	932.50876	931.501483	1.9294	0.0017992	-0.74273	-0.0006926	1.1866	0.0011066	932.5074252134742	27.857	0.21717	27.857	27.784	28.001	0	300	67	1.4411188	0.039171934	1.4411188	292.8852	0	7.96109						391	10	4	NaN	NaN	NaN	0.5868	1	6636	6636		26.115	1.1539	1	59890			9966	13885	5791	5911	7863	7863					0.03299266665953837
IENPSQEIV	9	Unmodified	_IENPSQEIV_					0	0	0		ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7665714547	2	514.766571	1027.51859	1.3066	0.00067258	2.4818	0.0012776	3.7884	0.0019501	514.7669773603458	21.633	0.12024	21.619	21.595	21.715	-0.013895	1248	61	0.8689189	0.036845744	0.86739945	352.703	0	14.956055						141	6	2	NaN	NaN	NaN	0.51576	1	9479	9479		8.962	0.67169	1	16522			9967	3587	5792	5912	7864	7864					0.005931424811024044
IENWCETML	9	Unmodified	_IENWCETML_					0	0	0			REV__nc|ENSG00000185483|Q01973-2|ROR1	REV__nc|ENSG00000185483|Q01973-2|ROR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.74900986575	2	569.74901	1137.48347	1.8812	0.0010718	3.4316	0.0019552	5.3128	0.003027	570.2524431172601	19.06	0.1919	19.06	18.964	19.156	0	1257	58	0.86339295	0.03499776	0.86339295	350.01175	0	14.187775						253	9	3	NaN	NaN	NaN	0.46215	1	14358	14358		11.17	0	1	19312	+		9968	10965	5793	5913	7865	7865					-0.07977559642722554
IEPADLWLV	9	Unmodified	_IEPADLWLV_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5771737317998	1	1055.57717	1054.5699	2.0601	0.0021746	-2.3784	-0.0025106	-0.31832	-0.00033601	1055.576201132543	36.326	0.28939	36.326	36.302	36.591	0	129	142	1.5422925	0.08316767	1.5422925	312.91382	0	16.87378						596	13	3	NaN	NaN	NaN	0.13999	1	10850	10850		34.439	0	1	106590	+		9969	10756	5794	5914	7866	7866					0.044795112457904906
IEPKDFTIP	9	Unmodified	_IEPKDFTIP_					0	0	0		tr|U7SSJ6|U7SSJ6_FUSNUFerritin/DPSproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01475PE=3SV=1	tr|U7SSJ6|U7SSJ6_FUSNUFerritin/DPSproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01475PE=3SV=1	tr|U7SSJ6|U7SSJ6_FUSNUFerritin/DPSproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01475PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2896824102501	2	530.289682	1058.56481	0.90985	0.00048249	7.7325	0.0041005	8.6424	0.004583	530.7950992388982	24.405	0.19308	24.393	24.248	24.441	-0.012747	1281	109	0.84864825	0.06629366	0.8471288	344.34137	0	26.898834						266	9	3	NaN	NaN	NaN	0.58159	1	10802	10802		6.2502	0.55606	1	32664			9970	13830	5795	5915	7867	7867					0.037872073831977104
IEQALDKM	8	Unmodified	_IEQALDKM_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.486644165	1	947.486644	946.479368	1.7942	0.0017	6.897	0.0065348	8.6912	0.0082348	947.4930491466957	29.836	0.096561	29.836	29.787	29.884	0	279	70	1.4535767	0.040941596	1.4535767	295.3489	0	8.318817						80	5	2	NaN	NaN	NaN	0.65542	1	6995	6995		21.835	4.036	1	4989.3			9971	1975	5796	5916	7868	7868					0.003987189258737089
IEQALDKM	8	Unmodified						0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	947.486644	946.479368	2.3554	0.0022317	12.495	0.011839	14.85	0.01407	947.4980254393992	29.449	0.048267	29.442	29.417	29.466	-0.0070667	201	31	1.4997677	0.01774311	1.4982482	304.7343		3.605194	-0.197	0.0024753	0.022336	NaN	21.835	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2107			9972	1975	5796	5916							0.003987189258737089
IEQANSDPI	9	Unmodified	_IEQANSDPI_					0	0	0			REV__nc|ENSG00000118961|Q9H6V9-3|LDAH	REV__nc|ENSG00000118961|Q9H6V9-3|LDAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.7430963584	2	493.743096	985.47164	1.4346	0.00070834	-0.71675	-0.00035389	0.71788	0.00035445	493.7429454782236	18.698	0.14398	18.684	18.636	18.78	-0.014059	1335	43	0.8154261	0.02586186	0.81390667	331.1764	0	10.503479						115	7	2	NaN	NaN	NaN	0.2345	1	7884	7884		23.118	2.5621	1	9675.4	+		9973	13109	5797	5917	7869	7869					-0.021677170700399984
IEQEGPEYW	9	Unmodified	_IEQEGPEYW_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.W75R|1|0.44|ENSG00000206503|chr6:29942906-29942906|T/C|missense_variant;HLA-B|p.W75C|1|0.22|ENSG00000234745|chr6:31356806-31356806|C/A|missense_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1150.5051310007	1	1150.50513	1149.49785	2.6721	0.0030742	3.7912	0.0043618	6.4632	0.007436	1150.510332371429	23.899	0.1206	23.899	23.875	23.995	0	111	49	1.5529068	0.028295875	1.5529068	314.7311	0	5.7348022						121	6	2	NaN	NaN	NaN	0.019939	1	14774	14774		72.076	41.285	1	9787.3			9974	5943;6047	5798	5918	7870	7870					-0.0709144789855145
IEQEGPEYW	9	Unmodified						0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.W75R|1|0.44|ENSG00000206503|chr6:29942906-29942906|T/C|missense_variant;HLA-B|p.W75C|1|0.22|ENSG00000234745|chr6:31356806-31356806|C/A|missense_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1150.50513	1149.49785	2.4649	0.0028359	1.8043	0.0020758	4.2691	0.0049117	1150.5079832047702	23.899	0.1447	23.886	23.861	24.006	-0.01305	108	49	1.5546752	0.028295875	1.5531558	315.0895		5.7347717	-0.0066209	-0.0010227	0.00012448	NaN	72.076	120	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9611.7			9975	5943;6047	5798	5918							-0.0709144789855145
IEQGKKCR	8	Unmodified	_IEQGKKCR_					0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.2660187362	2	481.266019	960.517485	2.4557	0.0011819	5.9704	0.0028733	8.4261	0.0040552	481.26880626501855	26.143	0.096533	26.131	26.083	26.18	-0.011137	1326	70	0.8209676	0.04248041	0.81944823	333.54617	0	17.259125						136	5	2	NaN	NaN	NaN	0.81251	1	7204	7204		7.5404	0.67717	1	12598			9976	1403	5799	5919	7871	7871					0.035646496311983356
IEQGKKCR	8	Unmodified						0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	481.266019	960.517485	2.0963	0.0010089	9.163	0.0044098	11.259	0.0054187	481.27078895356755	26.119	0.096558	26.119	26.07	26.167	0	1341	64	0.8117308	0.038790643	0.8117308	329.79337		15.76004	-0.0063795	0.0019259	-0.0038587	NaN	7.5404	151	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15804			9977	1403	5799	5919							0.035646496311983356
IEQLDLRPNG	10	Unmodified	_IEQLDLRPNG_					0	0	0			REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8118446256001	2	577.811845	1153.60914	0.89686	0.00051822	-8.3327	-0.0048147	-7.4358	-0.0042965	577.8071828641566	32.369	0.12067	32.365	32.316	32.437	-0.0037613	1167	37	0.91857195	0.022035897	0.9170525	372.31854	0	8.931671						115	6	3	NaN	NaN	NaN	0.60059	1	14445	14445		14.854	0.8124	1	10645	+		9978	9534	5800	5920	7872	7872					0.03847611529386086
IEQLDLRPNG	10	Unmodified						0	0	0			REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.811845	1153.60914	1.3439	0.00077653	-7.4201	-0.0042874	-6.0762	-0.0035109	577.8071473550874	32.37	0.072376	32.37	32.345	32.418	0	1173	43	0.91489893	0.025711298	0.91489893	370.82977		10.421387	0.0024316	0.0004803	-0.0010768	NaN	14.854	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9142.1	+		9979	9534	5800	5920							0.03847611529386086
IEQLDLRPNG	10	Unmodified						0	0	0			REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.811845	1153.60914	0.89686	0.00051822	-8.3327	-0.0048147	-7.4358	-0.0042965	577.8071828641566	32.369	0.12067	32.365	32.316	32.437	-0.0037613	1167	37	0.91857195	0.022035897	0.9170525	372.31854		8.931671	-0.0024316	-0.0005743	0.0010768	NaN	14.854	115	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10645	+		9980	9534	5800	5920							0.03847611529386086
IEQPFANI	8	Unmodified	_IEQPFANI_					0	0	0			REV__ENST00000474256.1_1_22:46640991-46646169:-|nuORF	REV__ENST00000474256.1_1_22:46640991-46646169:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4883587245	1	931.488359	930.481082	1.0122	0.00094284	-0.36114	-0.0003364	0.65104	0.00060643	931.4875268149807	27.518	0.096539	27.508	27.484	27.581	-0.009552	312	82	1.433996	0.04809761	1.4324765	291.44223	0	9.775269						175	5	2	NaN	NaN	NaN	0.36826	1	6483	6483		38.131	2.8343	1	27417	+		9981	11269	5801	5921	7873	7873					0.013060960061352489
IESFNEYLF	9	Unmodified	_IESFNEYLF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000085788|O94830-2|DDHD2;ENSG00000085788|ENST00000397166|DDHD2	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.85360682236666	3	387.853607	1160.53899	0.83492	0.00032383	3.2178	0.001248	4.0527	0.0015719	387.8559538759201	12.796	0.048035	12.796	12.772	12.82	0	1500	46	0.71351165	0.027882397	0.71351165	433.76917	0	16.950714						46	3	2	NaN	NaN	NaN	0.64666	1	15160	15160		1.8901	0.78805	1	3586.4			9982	1638	5802	5922	7874	7874					-0.034856868590850354
IESLSAEYAKK	11	Unmodified	_IESLSAEYAKK_					0	0	0			REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8349853709	2	619.834985	1237.65542	0.89549	0.00055506	0.62311	0.00038623	1.5186	0.00094128	619.8359386233326	26.842	0.072412	26.832	26.783	26.856	-0.010645	1110	46	0.95342636	0.02748698	0.9519069	386.13562	0	11.132172						60	4	2	NaN	NaN	NaN	0.67772	1	16740	16740		8.9191	3.7302	1	6677.3	+		9983	9466	5803	5923	7875	7875					0.04609631640801126
IESLSAEYAKK	11	Unmodified						0	0	0			REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.834985	1237.65542	1.0498	0.00065069	3.4688	0.0021501	4.5186	0.0028008	619.8369567304215	26.819	0.072405	26.819	26.795	26.867	0	1110	64	0.95342636	0.0384984	0.95342636	386.13562		15.591766	-0.0063252	0.001238	0.00075972	NaN	8.9191	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7046.5	+		9984	9466	5803	5923							0.04609631640801126
IESLSAEYAKK	11	Unmodified						0	0	0			REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-4|MTUS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	619.834985	1237.65542	0.89549	0.00055506	0.62311	0.00038623	1.5186	0.00094128	619.8359386233326	26.842	0.072412	26.832	26.783	26.856	-0.010645	1110	46	0.95342636	0.02748698	0.9519069	386.13562		11.132172	0.0063252	-0.0022898	-0.00075972	NaN	8.9191	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6677.3	+		9985	9466	5803	5923							0.04609631640801126
IESNSGGF	8	Unmodified	_IESNSGGF_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.3628238599002	1	810.362824	809.355547	2.1536	0.0017452	5.9606	0.0048303	8.1142	0.0065755	810.3677304967573	28.122	0.072382	28.122	28.122	28.194	0	507	70	1.3178225	0.04126537	1.3178225	268.41513	0	8.404968						114	4	3	NaN	NaN	NaN	0.81251	1	4877	4877		7.5404	2.0745	1	9190.7			9986	2546	5804	5924	7876	7876					-0.05675615850066151
IESPCHPFGDR	11	Unmodified	_IESPCHPFGDR_					0	0	0			REV__ATP10B|p.T27I|1|0.69|ENSG00000118322|chr5:160687995-160687995|G/A|missense_variant	REV__ATP10B|p.T27I|1|0.69|ENSG00000118322|chr5:160687995-160687995|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.86087843890004	3	419.860878	1256.56081	1.6629	0.0006982	3.1267	0.0013128	4.7896	0.002011	419.86263434862906	15.534	0.072031	15.534	15.534	15.606	0	1413	37	0.7673241	0.022232234	0.7673241	466.0655	0	13.503662						51	4	2	NaN	NaN	NaN	0.77544	1	17927	17927		0.29401	0	1	3904.6	+		9987	8151	5805	5925	7877	7877					-0.057212053821558584
IESPEVITI	9	Unmodified	_IESPEVITI_					0	0	0			REV__tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	REV__tr|U7STV5|U7STV5_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01203PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5561039387002	1	1000.5561	999.548827	1.5254	0.0015263	-0.47408	-0.00047435	1.0513	0.0010519	1000.5561635638102	30.56	0.096542	30.56	30.511	30.608	0	198	61	1.5015416	0.03547871	1.5015416	304.8624	0	7.2033386						145	5	3	NaN	NaN	NaN	0.062072	1	8579	8579		41.785	2.3258	1	15002	+		9988	13502	5806	5926	7878	7878					0.04903501146293365
IESTMAVTIDG	11	Unmodified	_IESTMAVTIDG_					0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7788215502001	2	568.778822	1135.54309	1.0293	0.00058545	-10.585	-0.0060203	-9.5552	-0.0054348	568.7730838041017	22.042	0.14447	22.029	21.956	22.101	-0.013731	1227	58	0.88180584	0.034971297	0.8802864	357.48355	0	14.177338						134	7	2	NaN	NaN	NaN	0.65577	1	13825	13825		10.36	1.3982	1	19115	+		9989	9990	5807	5927	7879	7879					-0.019259654276766014
IESTMAVTIDG	11	Unmodified						0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.778822	1135.54309	1.8754	0.0010667	-13.576	-0.007722	-11.701	-0.0066553	569.2718744621676	22.019	0.12053	22.019	21.994	22.115	0	1221	52	0.885486	0.03128332	0.885486	358.9755		12.68222	-0.0050269	-0.0020236	0.0025998	NaN	10.36	171	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18285	+		9990	9990	5807	5927							-0.019259654276766014
IESTMAVTIDG	11	Unmodified						0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.778822	1135.54309	1.0293	0.00058545	-10.585	-0.0060203	-9.5552	-0.0054348	568.7730838041017	22.042	0.14447	22.029	21.956	22.101	-0.013731	1227	58	0.88180584	0.034971297	0.8802864	357.48355		14.177338	0.0050269	0.0013799	-0.0025998	NaN	10.36	134	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19115	+		9991	9990	5807	5927							-0.019259654276766014
IETFAKEEP	9	Unmodified	_IETFAKEEP_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2689469681501	2	532.268947	1062.52334	1.8167	0.00096699	-10.624	-0.005655	-8.8076	-0.004688	532.263638664599	15.534	0.12006	15.534	15.51	15.63	0	1284	61	0.8468043	0.03687364	0.8468043	343.5768	0	14.960846						164	6	4	NaN	NaN	NaN	0.49999	1	11220	11220		9.6116	0	1	15265			9992	5904	5808	5928	7880	7880					-0.005419733761300449
IETPMMNI	8	Oxidation (M)	_IETPM(Oxidation (M))MNI_		IETPM(0.774)M(0.226)NI		IETPM(5.4)M(-5.4)NI	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4478158177001	1	964.447816	963.440539	1.1501	0.0011092	-2.2741	-0.0021932	-1.124	-0.001084	964.4459719674705	31.308	0.31372	31.308	31.235	31.549	0	288	130	1.4482387	0.07657564	1.4482387	294.19003	0	15.555267						897	14	4	NaN	NaN	NaN	0.23625	1	7423	7423		47.136	7.677	2	242330			9993	686	5809	5929	7881	7881		71			-0.04264329700140479
IEVPHKLLE	9	Unmodified	_IEVPHKLLE_					0	0	0		nc|ENSG00000185739|Q86TD4-3|SRL;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3187742007002	2	539.318774	1076.623	0.99247	0.00053526	1.9664	0.0010605	2.9588	0.0015958	539.3203629948207	26.987	0.16897	26.977	26.929	27.098	-0.010126	1248	76	0.8689189	0.046014845	0.86739945	352.4903	0	18.666626						228	8	2	NaN	NaN	NaN	0.21199	1	11536	11536		24.562	0.16177	1	37570			9994	5432	5810	5930	7882	7882					0.08774889028495636
IEYIDYSDI	9	Unmodified	_IEYIDYSDI_					0	0	0		tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7662371037	2	565.766237	1129.51792	2.22	0.001256	-11.863	-0.0067115	-9.6428	-0.0054555	566.2603466415709	17.765	0.095863	17.765	17.741	17.837	0	1257	46	0.86339295	0.027632773	0.86339295	350.04138	0	11.203033						73	5	2	NaN	NaN	NaN	0.62619	1	14052	14052		4.4131	0.84331	1	6941.5			9995	13788	5811	5931	7883	7883					-0.04165696958625631
IFAAPNEIAW	10	Unmodified	_IFAAPNEIAW_					0	0	0			REV__ENST00000309608.6_1_8:12285230-12291581:-|nuORF	REV__ENST00000309608.6_1_8:12285230-12291581:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2952991044	2	566.295299	1130.57605	1.1473	0.0006497	-7.7459	-0.0043865	-6.5986	-0.0037368	566.2909188450798	34.757	0.12047	34.756	34.732	34.853	-0.0006485	1212	79	0.8910048	0.047837377	0.88948536	361.23184	0	19.394226						142	6	2	NaN	NaN	NaN	0.69717	1	13648	13648		8.2448	0.70444	1	18339	+		9996	9916	5812	5932	7884	7884					0.01598029477304408
IFAAPNEIAW	10	Unmodified						0	0	0			REV__ENST00000309608.6_1_8:12285230-12291581:-|nuORF	REV__ENST00000309608.6_1_8:12285230-12291581:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.295299	1130.57605	1.1473	0.0006497	-7.7459	-0.0043865	-6.5986	-0.0037368	566.2909188450798	34.757	0.12047	34.756	34.732	34.853	-0.0006485	1212	79	0.8910048	0.047837377	0.88948536	361.23184		19.394226	-0.0010352	0.0014984	0.00015998	NaN	8.2448	142	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18339	+		9997	9916	5812	5932							0.01598029477304408
IFAAVCVLL	9	Unmodified	_IFAAVCVLL_					0	0	0			REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5586868961001	1	948.558687	947.55141	1.5578	0.0014776	-0.40841	-0.0003874	1.1494	0.0010902	948.5586427282404	38.634	0.38445	38.638	38.566	38.95	0.0040245	234	70	1.4802408	0.04085028	1.4787214	300.7619	0	8.300171						513	17	4	NaN	NaN	NaN	0.055365	1	6902	6902		44.632	2.6543	1	92950	+		9998	12835	5813	5933	7885	7885					0.07553678070246406
IFAAVCVLL	9	Unmodified						0	0	0			REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.558687	947.55141	0.93422	0.00088616	-0.19616	-0.00018607	0.73806	0.00070009	948.558448948908	38.636	0.26433	38.636	38.564	38.828	0	237	70	1.4784646	0.040858984	1.4784646	300.401		8.30191	-0.0009404	0.00012395	-0.00012843	NaN	44.632	470	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90577	+		9999	12835	5813	5933							0.07553678070246406
IFAAVCVLL	9	Unmodified						0	0	0			REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.558687	947.55141	1.5578	0.0014776	-0.40841	-0.0003874	1.1494	0.0010902	948.5586427282404	38.634	0.38445	38.638	38.566	38.95	0.0040245	234	70	1.4802408	0.04085028	1.4787214	300.7619		8.300171	0.0009404	-7.7379E-05	0.00012843	NaN	44.632	513	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92950	+		10000	12835	5813	5933							0.07553678070246406
IFAFSGQTL	9	Unmodified	_IFAFSGQTL_					0	0	0			REV__ENSG00000140093|ENST00000261994|SERPINA10	REV__ENSG00000140093|ENST00000261994|SERPINA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.2634676597501	2	492.263468	982.512382	1.1712	0.00057655	-2.2294	-0.0010974	-1.0581	-0.00052089	492.2624547703672	16.754	0.11984	16.741	16.645	16.765	-0.013294	1332	52	0.8172735	0.03140533	0.81575406	331.94043	0	12.755463						125	6	3	NaN	NaN	NaN	0.10363	1	7798	7798		35.296	0.85769	1	22377	+		10001	9786	5814	5934	7886	7886					0.020426690402587155
IFALKKVFC	9	Unmodified	_IFALKKVFC_					0	0	0		ENST00000518386.5_1_8:108276516-108334150:-|nuORF	ENST00000518386.5_1_8:108276516-108334150:-|nuORF	ENST00000518386.5_1_8:108276516-108334150:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	356.88066269883336	3	356.880663	1067.62016	1.39	0.00049608	-3.8894	-0.001388	-2.4993	-0.00089195	356.878843226487	24.357	0.048252	24.357	24.333	24.381	0	1464	31	0.73579943	0.018561065	0.73579943	447.77484	0	11.29541						43	3	2	NaN	NaN	NaN	0.66035	1	11463	11463		2.5994	1.4226	1	3866.3			10002	7381	5815	5935	7887	7887					0.08905342369962455
IFASFNDTF	9	Unmodified	_IFASFNDTF_					0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.4938380329	1	1061.49384	1060.48656	1.6777	0.0017809	0.098866	0.00010495	1.7766	0.0018858	1061.4964847713245	29.184	0.14479	29.184	29.16	29.305	0	165	91	1.5210435	0.053144813	1.5210435	308.5804	0	10.781677						248	7	3	NaN	NaN	NaN	0.028404	1	11105	11105		61.199	32.303	1	23164			10003	4329	5816	5936	7888	7888					-0.04126225202048772
IFASFNDTF	9	Unmodified						0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1061.49384	1060.48656	1.258	0.0013354	-0.77398	-0.00082158	0.48401	0.00051378	1061.4951388074269	29.207	0.096571	29.2	29.151	29.248	-0.0077209	165	73	1.5210435	0.042515874	1.5195241	308.5804		8.625336	0.0078224	-0.00060537	-0.00075972	NaN	61.199	148	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15019			10004	4329	5816	5936							-0.04126225202048772
IFDDDLEDD	9	Unmodified	_IFDDDLEDD_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7194838763501	2	548.719484	1095.42441	1.1161	0.00061245	2.1782	0.0011952	3.2943	0.0018077	548.7180012272598	31.258	0.072414	31.253	31.229	31.302	-0.0050716	1305	46	0.83389086	0.027677655	0.8323714	338.20728	0	11.225403						81	4	2	NaN	NaN	NaN	0.62619	1	12303	12303		4.4131	0	1	8163.4			10005	1349	5817	5937	7889	7889					-0.11948041131699938
IFDEAALEV	9	Unmodified	_IFDEAALEV_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5091537461	1	1006.50915	1005.50188	1.3987	0.0014078	2.0035	0.0020165	3.4021	0.0034243	1006.5098975638247	28.097	0.072393	28.088	28.088	28.161	-0.0089798	174	52	1.5157272	0.03013289	1.5142077	307.7177	0	6.117462						85	4	2	NaN	NaN	NaN	0.49672	1	8628	8628		9.746	3.4958	1	9361.2			10006	7185	5818	5938	7890	7890					-0.0006535840486776578
IFDEAEKL	8	Unmodified	_IFDEAEKL_					0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A;ENST00000472001.1_1_1:179057051-179060848:+|nuORF;ENST00000495145.1_1_1:179054938-179057273:+|nuORF;nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.7529327632	2	482.752933	963.491313	1.468	0.00070867	-2.2462	-0.0010843	-0.77819	-0.00037567	482.75181844822015	20.742	0.096418	20.742	20.718	20.814	0	1350	43	0.80618626	0.025875807	0.80618626	327.52652	0	10.512482						143	5	3	NaN	NaN	NaN	0.29743	1	7430	7430		42.318	17.357	1	20218			10007	5460	5819	5939	7891	7891					0.008106589407248066
IFDEAEKL	8	Unmodified						0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A;ENST00000472001.1_1_1:179057051-179060848:+|nuORF;ENST00000495145.1_1_1:179054938-179057273:+|nuORF;nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.752933	963.491313	1.5273	0.00073732	-1.1334	-0.00054714	0.39394	0.00019017	482.75289721400077	20.742	0.096359	20.728	20.704	20.801	-0.014088	1347	37	0.8080346	0.02218169	0.8065152	328.27744		9.011688	-0.0068816	0.00070923	0.00016447	NaN	42.318	119	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16574			10008	5460	5819	5939							0.008106589407248066
IFDGNVAHI	9	Unmodified	_IFDGNVAHI_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.25871663285005	2	493.258717	984.50288	1.0438	0.00051485	-0.30204	-0.00014898	0.74174	0.00036587	493.2588653129636	21.609	0.096252	21.595	21.571	21.667	-0.013897	1305	61	0.83389086	0.036925495	0.8323714	338.6802	0	14.99707						110	5	3	NaN	NaN	NaN	0.10363	1	7857	7857		35.296	9.5447	1	14834			10009	3790	5820	5940	7892	7892					0.010009007547182591
IFDLGGGTF	9	Unmodified	_IFDLGGGTF_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4618096230001	1	926.46181	925.454533	2.0152	0.001867	-0.74982	-0.00069468	1.2653	0.0011723	926.4606917498047	30.415	0.31375	30.415	30.342	30.656	0	300	112	1.4411188	0.0659256	1.4411188	292.9131	0	13.399628						629	14	3	NaN	NaN	NaN	0.01047	1	6502	6502		91.429	44.293	1	166620			10010	1743;5882	5821	5941	7893	7893					-0.011175928851798744
IFDLGGGTF	9	Unmodified	_IFDLGGGTF_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.4618096230001	1	926.46181	925.454533	0.91978	0.00085214	-0.20759	-0.00019233	0.71218	0.00065981	926.4609722647529	30.414	0.31368	30.407	30.335	30.649	-0.0064106	297	121	1.4428991	0.07127476	1.4413797	293.2749	0	14.486847						739	14	4	NaN	NaN	NaN	0.0018626	1	6373	6373		111.43	63.431	1	188240			10011	1743;5882	5821	5941	7894	7894					-0.011175928851798744
IFDLQSNTVL	10	Unmodified	_IFDLQSNTVL_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.31114613385	2	575.311146	1148.60774	0.90887	0.00052289	-3.3123	-0.0019056	-2.4035	-0.0013827	575.3111174526601	29.907	0.12063	29.9	29.852	29.972	-0.0070667	1188	58	0.90571284	0.034925938	0.9041934	367.1253	0	14.157043						110	6	2	NaN	NaN	NaN	0.5358	1	14263	14263		17.97	3.5447	1	40072			10012	2370	5822	5942	7895	7895					0.03937977440614304
IFDLRNAC	8	Unmodified	_IFDLRNAC_					0	0	0		ENST00000602725.5_1_1:32373157-32373337:-|nuORF	ENST00000602725.5_1_1:32373157-32373337:-|nuORF	ENST00000602725.5_1_1:32373157-32373337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.4716628028	1	951.471663	950.464386	1.2502	0.0011896	2.4793	0.002359	3.7295	0.0035485	951.4747182820587	26.818	0.16894	26.808	26.783	26.952	-0.010645	1146	67	0.93142134	0.040355563	0.9299019	189.242	0	8.199249						174	8	2	NaN	NaN	NaN	0.83913	1	6965	6965		3.9685	1.507	1	13017			10013	7773	5823	5943	7896	7896					-0.012827281514660172
IFDLSEVL	8	Unmodified	_IFDLSEVL_					0	0	0		ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant;ENSG00000185650|ENST00000439696|ZFP36L1	ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.5084254646	1	935.508425	934.501149	2.0739	0.0019401	-0.02714	-2.539E-05	2.0467	0.0019147	935.5088682550477	34.299	0.28922	34.298	34.249	34.539	-0.0012474	261	181	1.4642475	0.10683274	1.462728	297.5718	0	21.71109						916	13	5	NaN	NaN	NaN	0.034452	1	6576	6576		101.55	5.3087	1	548980			10014	5427	5824	5944	7897	7897					0.031278469460858105
IFDPLEIIL	9	Unmodified	_IFDPLEIIL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.6288749513	1	1072.62887	1071.6216	1.3671	0.0014663	-0.18702	-0.0002006	1.18	0.0012657	1072.6277711419737	43.369	0.16776	43.369	43.297	43.465	0	72	70	1.5758814	0.040630102	1.5758814	319.6629	0	8.241699						272	8	3	NaN	NaN	NaN	0.032764	1	11639	11639		55.494	0	1	27959			10015	1245	5825	5945	7898	7898					0.08865254939723854
IFDPLEIIL	9	Unmodified	_IFDPLEIIL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.6288749513	1	1072.62887	1071.6216	0.46142	0.00049493	1.074	0.0011521	1.5355	0.001647	1072.6303381046791	43.319	0.16768	43.33	43.282	43.45	0.01099	72	70	1.5758814	0.04062581	1.5743619	319.6629	0	8.240845						218	8	3	NaN	NaN	NaN	0.01047	1	11337	11337		91.429	0	1	20573			10016	1245	5825	5945	7899	7899					0.08865254939723854
IFDPNILTI	9	Unmodified	_IFDPNILTI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.592823796	1	1045.59282	1044.58555	1.1803	0.0012341	1.2977	0.0013568	2.478	0.0025909	1045.593344307641	33.142	0.12064	33.142	33.118	33.238	0	120	55	1.5476005	0.031842947	1.5476005	314.02948	0	6.4613647						140	6	2	NaN	NaN	NaN	0.026469	1	10419	10419		63.731	15.728	1	13343			10017	2120	5826	5946	7900	7900					0.06503797762843533
IFDPNILTI	9	Unmodified	_IFDPNILTI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.592823796	1	1045.59282	1044.58555	1.0164	0.0010628	0.49457	0.00051712	1.511	0.0015799	1045.5944534014834	33.165	0.12064	33.162	33.114	33.235	-0.0024796	114	52	1.5511382	0.030069113	1.5496187	314.74734	0	6.1014404						148	6	2	NaN	NaN	NaN	0.052553	1	10204	10204		45.827	21.265	1	13928			10018	2120	5826	5946	7901	7901					0.06503797762843533
IFDQSGTYL	9	Unmodified	_IFDQSGTYL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5044027192	1	1043.5044	1042.49713	2.5469	0.0026577	-0.82688	-0.00086285	1.72	0.0017949	1043.5032915040117	25.829	0.31372	25.829	25.781	26.094	0	129	163	1.5422925	0.09567082	1.5422925	312.9606	0	19.413422						985	14	5	NaN	NaN	NaN	0.032409	1	10315	10315		55.958	14.498	1	241490			10019	1753	5827	5947	7902	7902					-0.022422425476179342
IFDQSGTYL	9	Unmodified	_IFDQSGTYL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5044027192	1	1043.5044	1042.49713	2.5232	0.0026329	-0.79936	-0.00083414	1.7238	0.0017988	1043.5033414025402	25.829	0.24137	25.817	25.769	26.01	-0.011602	126	160	1.544062	0.09390414	1.5425426	313.31967	0	19.054932						953	11	4	NaN	NaN	NaN	0.022185	1	10108	10108		69.233	35.808	1	245150			10020	1753	5827	5947	7903	7903					-0.022422425476179342
IFDSKVTEI	9	Unmodified	_IFDSKVTEI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2871397213	2	526.28714	1050.55973	1.8066	0.00095079	-2.9576	-0.0015565	-1.151	-0.00060575	526.2858979264923	21.826	0.16866	21.826	21.802	21.97	0	1272	67	0.854179	0.0405522	0.854179	346.61945	0	16.45578						281	8	4	NaN	NaN	NaN	0.050761	1	10656	10656		46.588	1.4228	1	88418			10021	1955	5828	5948	7904	7904					0.03646903520575506
IFDSKVTEI	9	Unmodified	_IFDSKVTEI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2871397213	2	526.28714	1050.55973	1.3015	0.00068499	0.10977	5.7769E-05	1.4113	0.00074276	526.2873061112953	21.826	0.12037	21.812	21.788	21.908	-0.013895	1272	70	0.854179	0.042393148	0.8526596	346.61942	0	17.20282						243	6	3	NaN	NaN	NaN	0.071077	1	10439	10439		40.006	2.7035	1	91630			10022	1955	5828	5948	7905	7905					0.03646903520575506
IFDSLIVTL	9	Unmodified	_IFDSLIVTL_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229004	1	1020.59757	1019.5903	1.6923	0.0017272	0.58121	0.00059318	2.2735	0.0023204	1020.5978031265043	35.434	0.048222	35.434	35.41	35.458	0	87	61	1.5670487	0.035339832	1.5670487	318.0774	0	7.1732483						126	3	3	NaN	NaN	NaN	0.094712	1	9362	9362		36.586	0	1	13068			10023	4676	5829	5949	7906	7906					0.08128681905645863
IFDVGALL	8	Unmodified	_IFDVGALL_					0	0	0		ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4923814699001	1	847.492381	846.485105	1.4578	0.0012355	-0.69204	-0.0005865	0.76577	0.00064898	847.491681521706	34.203	0.1448	34.203	34.179	34.324	0	378	82	1.3947657	0.048220515	1.3947657	283.879	0	9.814392						311	7	4	NaN	NaN	NaN	0.19946	1	5350	5350		50.033	2.7112	1	64941			10024	5377	5830	5950	7907	7907					0.055721854998637355
IFDVGALL	8	Unmodified	_IFDVGALL_					0	0	0		ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.4923814699001	1	847.492381	846.485105	0.90231	0.0007647	-0.68548	-0.00058094	0.21683	0.00018376	847.4913374632109	34.202	0.19295	34.201	34.153	34.346	-0.0012474	378	100	1.3947657	0.058942556	1.3932463	283.879	0	11.996674						321	9	4	NaN	NaN	NaN	0.40747	1	5215	5215		36.036	0	1	65723			10025	5377	5830	5950	7908	7908					0.055721854998637355
IFDWNVKQ	8	Unmodified	_IFDWNVKQ_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.27436669705	2	525.274367	1048.53418	1.4914	0.00078338	7.7393	0.0040652	9.2306	0.0048486	525.2785586313544	23.778	0.12051	23.765	23.741	23.861	-0.013048	1275	70	0.85233563	0.042411506	0.8508162	345.88	0	17.210693						219	6	3	NaN	NaN	NaN	0.49126	1	10353	10353		31.561	4.8295	1	27771			10026	2594	5831	5951	7909	7909					0.01185473788791569
IFEAQIAGL	9	Unmodified	_IFEAQIAGL_					0	0	0		CON__Q9DCV7;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	CON__Q9DCV7	CON__Q9DCV7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.5353089171002	1	961.535309	960.528032	0.91303	0.00087791	-1.1053	-0.0010628	-0.19225	-0.00018486	961.5329102669291	31.839	0.096529	31.839	31.815	31.911	0	249	52	1.4713576	0.030216217	1.4713576	298.89908	0	6.138275						89	5	2	NaN	NaN	NaN	0.2961	1	7348	7348		19.164	0.045272	1	8245.7		+	10027	196	5832	5952	7910	7910					0.046189555572937024
IFEAQIAGL	9	Unmodified						0	0	0		CON__Q9DCV7;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	CON__Q9DCV7	CON__Q9DCV7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	961.535309	960.528032	0.90746	0.00087255	1.2682	0.0012194	2.1756	0.0020919	961.5355012129372	31.838	0.072395	31.833	31.809	31.881	-0.0044155	243	43	1.4749115	0.02487731	1.473392	299.62103		5.053711	-0.0027309	0.0011753	0.0010172	NaN	19.164	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7666.8		+	10028	196	5832	5952							0.046189555572937024
IFEGTNLSVPH	11	Unmodified	_IFEGTNLSVPH_					0	0	0			REV__ENST00000339656.7_1_19:58371426-58371873:+|nuORF	REV__ENST00000339656.7_1_19:58371426-58371873:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.2119055815667	3	405.211906	1212.61389	1.2654	0.00051276	1.3712	0.00055564	2.6366	0.0010684	405.21268442681173	20.429	0.096413	20.415	20.367	20.463	-0.014141	1524	37	0.698637	0.022321641	0.69711757	424.51242	0	13.563324						139	5	3	NaN	NaN	NaN	0.76803	1	16126	16126		0.7918	0	1	10420	+		10029	11776	5833	5953	7911	7911					0.016084956721442722
IFEYNPYRVL	10	Unmodified	_IFEYNPYRVL_					0	0	0			REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3480629564	2	657.348063	1312.68157	0.57984	0.00038116	4.2705	0.0028072	4.8503	0.0031884	657.8522375286012	33.504	0.19294	33.504	33.456	33.648	0	1209	49	0.892844	0.029425621	0.892844	361.37183	0	11.90979						152	9	3	NaN	NaN	NaN	0.77967	1	19000	19000		0.59723	0.081187	1	11027	+		10030	13081	5834	5954	7912	7912					0.03773945602938511
IFEYNPYRVL	10	Unmodified						0	0	0			REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	657.348063	1312.68157	0.57984	0.00038116	4.2705	0.0028072	4.8503	0.0031884	657.8522375286012	33.504	0.19294	33.504	33.456	33.648	0	1209	49	0.892844	0.029425621	0.892844	361.37183		11.90979	0	0	0	NaN	0.59723	152	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11027	+		10031	13081	5834	5954							0.03773945602938511
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2874740723	2	607.287474	1212.5604	1.9635	0.0011924	-2.2827	-0.0013862	-0.31915	-0.00019381	607.2857289826183	26.553	0.43492	26.553	26.432	26.867	0	1161	151	0.9222442	0.091766775	0.9222442	373.5922	0	37.17383						1358	19	4	NaN	NaN	NaN	0.012495	1	16785	16785		85.344	52.892	1	926850			10032	3963	5835	5955	7913	7913					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2874740723	2	607.287474	1212.5604	1.1661	0.00070818	0.34944	0.00021221	1.5156	0.00092039	607.7900747469735	27.615	0.12063	27.615	27.567	27.688	0	1164	76	0.9204082	0.04590559	0.9204082	372.84842	0	18.595917						148	6	2	NaN	NaN	NaN	0.58159	1	16786	16786		6.2502	0.15988	1	28029			10033	3963	5835	5955	7914	7914					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.2874740723	2	607.287474	1212.5604	1.5816	0.00096046	-1.5585	-0.00094648	0.023017	1.3978E-05	607.2863514769589	26.577	0.41025	26.566	26.47	26.88	-0.010645	1161	157	0.9222442	0.09544778	0.92072475	373.5922	0	38.664978						1705	18	6	NaN	NaN	NaN	0.021105	1	16118	16118		70.6	28.815	1	957570			10034	3963	5835	5955	7915	7915					-0.03738257039731252
IFFENHPYF	9	Unmodified						0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	607.287474	1212.5604	0.65459	0.00039752	-0.47655	-0.0002894	0.17804	0.00010812	607.2869109278369	27.615	0.048264	27.605	27.557	27.605	-0.009552	1164	67	0.9204082	0.040403485	0.91888875	372.84845		16.367035	-0.0051737	-0.00062567	-0.00075972	NaN	6.2502	81	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16802			10035	3963	5835	5955							-0.03738257039731252
IFFGGLVFKF	10	Unmodified	_IFFGGLVFKF_					0	0	0		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8366028131	2	587.836603	1173.65865	1.0688	0.00062825	-2.2955	-0.0013494	-1.2268	-0.00072114	588.3362851158776	34.492	0.14473	34.491	34.443	34.587	-0.0006485	1173	43	0.91489893	0.025711298	0.9133795	370.7549	0	10.419281						163	7	3	NaN	NaN	NaN	0.10964	1	15060	15060		44.638	26.839	1	16041			10036	5322	5836	5956	7916	7916					0.07876971276095901
IFFGHPRDPF	10	Unmodified	_IFFGHPRDPF_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.54521905506664	3	411.545219	1231.61383	1.2508	0.00051475	-2.3001	-0.00094661	-1.0494	-0.00043186	411.5442411952149	24.647	0.21713	24.647	24.598	24.816	0	1437	70	0.7524962	0.042669594	0.7524962	457.15964	0	25.92279						272	10	4	NaN	NaN	NaN	0.74854	1	17315	17315		2.239	0.54048	1	31367			10037	4416	5837	5957	7917	7917					0.0072854046279644535
IFFGLLPLL	9	Unmodified	_IFFGLLPLL_					0	0	0			REV__ENST00000498289.5_1_1:169773308-169819597:+|nuORF	REV__ENST00000498289.5_1_1:169773308-169819597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.8282464647501	2	516.828246	1031.64194	1.8443	0.00095318	-5.4025	-0.0027922	-3.5582	-0.001839	516.8256626754454	28.46	0.04829	28.46	28.436	28.484	0	1251	73	0.8670771	0.04420048	0.8670771	351.93686	0	17.94049						107	3	2	NaN	NaN	NaN	0.58547	1	9869	9869		6.0903	1.1806	1	11558	+		10038	8346	5838	5958	7918	7918					0.1273847039019529
IFGDYIERL	9	Unmodified	_IFGDYIERL_					0	0	0		CON__Q0V8M9	CON__Q0V8M9	CON__Q0V8M9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.5938864285	1	1125.59389	1124.58661	1.0488	0.0011805	3.348	0.0037685	4.3967	0.0049489	1125.5978855795759	32.948	0.21701	32.945	32.849	33.066	-0.0024757	66	91	1.579413	0.053004146	1.5778936	320.18738	0	10.745331						470	10	3	NaN	NaN	NaN	0.043119	1	13446	13446		49.833	15.379	1	63431		+	10039	207	5839	5959	7919	7919					0.029300121317419325
IFGGGFGY	8	Unmodified	_IFGGGFGY_					0	0	0		tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	tr|U7SZG0|U7SZG0_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00737PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.3879163984001	1	817.387916	816.38064	1.366	0.0011165	0.27184	0.0002222	1.6378	0.0013387	817.3880467809896	29.521	0.14475	29.514	29.49	29.635	-0.0070648	471	76	1.3393306	0.044767737	1.3378111	272.75674	0	9.117004						153	7	2	NaN	NaN	NaN	0.77734	1	4863	4863		12.26	4.6695	1	10672			10040	13928	5840	5960	7920	7920					-0.03489516256854586
IFGGGLKN	8	Unmodified	_IFGGGLKN_					0	0	0		tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	tr|U7SS07|U7SS07_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01498PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4566646656	1	805.456665	804.449388	1.8453	0.0014863	5.3126	0.0042791	7.1579	0.0057653	805.4611248193594	36.591	0.24081	36.591	36.543	36.784	0	486	73	1.3303722	0.043025136	1.3303722	270.9988	0	8.764282						305	11	3	NaN	NaN	NaN	0.62311	1	4802	4802		23.85	2.898	1	42619			10041	13822	5841	5961	7921	7921					0.03934148042844754
IFGKGGGG	8	Unmodified	_IFGKGGGG_					0	0	0		ENST00000234160.4_1_2:171822902-171823073:+|nuORF	ENST00000234160.4_1_2:171822902-171823073:+|nuORF	ENST00000234160.4_1_2:171822902-171823073:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852003	1	692.372601	691.365324	1.1623	0.00080472	6.4604	0.004473	7.6227	0.0052777	692.3771285887775	30.438	0.072405	30.432	30.384	30.456	-0.0057545	744	40	1.1755381	0.023511767	1.1740186	240.11522	0	4.8025055						71	4	2	NaN	NaN	NaN	0.84727	1	2988	2988		1.2418	0	1	5686.1			10042	6253	5842	5962	7922	7922					0.00729616945966427
IFGKGGGG	8	Unmodified						0	0	0		ENST00000234160.4_1_2:171822902-171823073:+|nuORF	ENST00000234160.4_1_2:171822902-171823073:+|nuORF	ENST00000234160.4_1_2:171822902-171823073:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.4904	0.0010319	6.2061	0.0042969	7.6964	0.0053288	692.3766222158439	30.439	0.096512	30.439	30.391	30.487	0	744	43	1.1755381	0.025321722	1.1755381	240.11523		5.1722107	0.0033778	-9.1145E-05	0.00075972	NaN	1.2418	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5403.5			10043	6253	5842	5962							0.00729616945966427
IFGSSGELQDN	11	Unmodified	_IFGSSGELQDN_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.7698424251502	2	583.769842	1165.52513	1.6022	0.00093529	-9.6612	-0.0056399	-8.059	-0.0047046	583.7639532360137	30.535	0.14483	30.535	30.487	30.632	0	1206	61	0.894683	0.036778092	0.894683	362.59198	0	14.905182						152	7	2	NaN	NaN	NaN	0.47586	1	15316	15316		19.336	1.3667	1	20662			10044	4637	5843	5963	7923	7923					-0.05100964358166493
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7893182695	2	512.789318	1023.56408	1.1425	0.00058588	-1.8442	-0.00094569	-0.70167	-0.00035981	512.7881983101719	35.361	0.19297	35.361	35.289	35.482	0	1323	43	0.8228144	0.025853395	0.8228144	334.00583	0	10.49472						259	9	4	NaN	NaN	NaN	0.021781	1	9522	9522		69.745	35.306	1	56179			10045	1141;3720;2357	5844	5964	7924	7924					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5713600724	1	1024.57136	1023.56408	1.8165	0.0018612	0.026431	2.7081E-05	1.843	0.0018883	1024.571463946918	35.337	0.26535	35.337	35.289	35.554	0	174	172	1.5157272	0.101130724	1.5157272	307.64426	0	20.526306						931	12	5	NaN	NaN	NaN	1.3557E-26	1	9524	9524		177.76	83.108	1	486120			10046	1141;3720;2357	5844	5964	7925	7925					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7893182695	2	512.789318	1023.56408	0.64984	0.00033323	-1.9299	-0.00098965	-1.2801	-0.00065642	512.7883351964266	35.36	0.19291	35.361	35.288	35.481	0.00053024	1323	46	0.8228144	0.027698576	0.82129496	334.00583	0	11.243744						260	9	4	NaN	NaN	NaN	0.00080915	1	9338	9338		114.61	61.284	1	56812			10047	1141;3720;2357	5844	5964	7926	7926					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.7692	0.0018126	-1.5641	-0.0016025	0.20506	0.0002101	1024.5721774271947	36.083	0.072319	36.084	36.012	36.084	0.0011024	171	49	1.5174994	0.028352857	1.51598	308.004	0	5.75473						78	4	2	NaN	NaN	NaN	0.11467	1	9339	9339		33.698	9.8479	1	5543.2			10048	1141;3720;2357	5844	5964	7927	7927					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.7195	0.0017617	-1.1133	-0.0011407	0.60613	0.00062102	1024.5699217546176	36.3	0.16858	36.301	36.277	36.446	0.0011024	174	61	1.5157272	0.035444856	1.5142077	307.6443	0	7.1941833						177	8	2	NaN	NaN	NaN	0.01663	1	9341	9341		76.264	32.017	1	22045			10049	1141;3720;2357	5844	5964	7928	7928					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.6109	0.0016505	-0.45974	-0.00047103	1.1511	0.0011794	1024.5710660730963	36.204	0.12054	36.205	36.132	36.253	0.0011024	177	52	1.5139546	0.030126572	1.5124352	307.28452	0	6.1147156						145	6	2	NaN	NaN	NaN	0.013314	1	9342	9342		82.858	38.611	1	15307			10050	1141;3720;2357	5844	5964	7929	7929					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.5759	0.0016146	-0.21079	-0.00021596	1.3651	0.0013986	1024.5711820670224	35.336	0.28943	35.336	35.263	35.553	-4.5776E-05	171	190	1.5174994	0.11181164	1.51598	308.004	0	22.694214						927	13	5	NaN	NaN	NaN	1.0815E-11	1	9344	9344		143.64	42.085	1	483850			10051	1141;3720;2357	5844	5964	7930	7930					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.0495	0.0010753	2.8133	0.0028824	3.8628	0.0039578	1025.579666161374	35.698	0.14458	35.698	35.698	35.843	0.00053024	174	64	1.5157272	0.037207246	1.5142077	307.64426	0	7.55188						173	7	2	NaN	NaN	NaN	0.42773	1	9347	9347		12.588	5.7247	1	15081			10052	1141;3720;2357	5844	5964	7931	7931					0.053244127341372405
IFGVIIDTF	9	Unmodified						0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3;nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1024.57136	1023.56408	2.4903	0.0025515	-0.81664	-0.0008367	1.6736	0.0017147	1024.5712747443538	36.398	0.024136	36.398	36.374	36.398	0	102	28	1.5582114	0.015912175	1.5582114	316.26724		3.2296753	0.15697	0.00037621	0.021116	NaN	33.698	30	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1523.6			10053	1141;3720;2357	5844	5964							0.053244127341372405
IFGYSTLLKEI	11	Unmodified	_IFGYSTLLKEI_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.36592135855	2	642.365921	1282.71729	2.5613	0.0016453	-5.559	-0.0035709	-2.9977	-0.0019256	642.3626149027563	41.544	0.79258	41.553	41.481	42.273	0.0082626	1224	94	0.883646	0.057058394	0.88212657	357.73605	0	23.099579						1520	32	2	NaN	NaN	NaN	0.73455	1	17657	17657		5.1889	1.2608	1	2855600	+		10054	8393	5845	5965	7932	7932					0.0872398305994011
IFHPTQPWVF	10	Unmodified	_IFHPTQPWVF_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.33221592695	2	636.332216	1270.64988	1.7895	0.0011387	-1.2117	-0.00077104	0.57781	0.00036768	636.3313506911408	27.953	0.14478	27.953	27.881	28.026	0	1137	55	0.9369253	0.03301817	0.9369253	379.34402	0	13.368469						145	7	3	NaN	NaN	NaN	0.5358	1	18248	18248		17.97	4.5066	1	19087			10055	6145	5846	5966	7933	7933					0.02537997639637979
IFHPTQPWVF	10	Unmodified	_IFHPTQPWVF_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.33221592695	2	636.332216	1270.64988	1.2939	0.00082334	-6.1891	-0.0039383	-4.8952	-0.003115	636.3293459615637	28.001	0.12067	27.992	27.943	28.064	-0.0089798	1134	67	0.9387595	0.040351212	0.93724006	380.0867	0	16.337463						136	6	2	NaN	NaN	NaN	0.6772	1	17433	17433		9.6116	3.6919	1	21469			10056	6145	5846	5966	7934	7934					0.02537997639637979
IFHYPFLGAM	10	Unmodified	_IFHYPFLGAM_					0	0	0		ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant;ENSG00000159556|ENST00000290759|ISL2	ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant	ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3020698915001	2	598.30207	1194.58959	1.3412	0.00080244	-4.3516	-0.0026036	-3.0104	-0.0018011	598.2994009131479	17.546	0.19184	17.532	17.484	17.676	-0.013567	1173	70	0.91489893	0.04223311	0.9133795	370.67944	0	17.111145						233	9	3	NaN	NaN	NaN	0.6337	1	15659	15659		12.588	1.9829	1	28393			10057	4031	5847	5967	7935	7935					7.563984922853706E-05
IFHYPFLGAM	10	Unmodified						0	0	0		ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant;ENSG00000159556|ENST00000290759|ISL2	ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant	ISL2|p.G15S|1|0.14|ENSG00000159556|chr15:76336926-76336926|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.30207	1194.58959	1.5956	0.00095463	-4.1802	-0.002501	-2.5846	-0.0015464	598.2998458118714	17.429	0.16782	17.429	17.405	17.573	0	1173	43	0.91489893	0.025711298	0.91489893	370.67944		10.417145	-0.051562	0.0001118	0.00075972	NaN	12.588	213	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23246			10058	4031	5847	5967							7.563984922853706E-05
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5353684965999	1	1098.53537	1097.52809	1.5747	0.0017298	-0.42496	-0.00046683	1.1497	0.001263	1098.5345536854888	32.394	0.24134	32.394	32.297	32.539	0	87	85	1.5670487	0.049481153	1.5670487	317.77582	0	10.034058						377	11	4	NaN	NaN	NaN	0.0047854	1	12740	12740		103.03	38.476	1	56511			10059	3144	5848	5968	7936	7936					-0.016770892333852316
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5353684965999	1	1098.53537	1097.52809	1.4134	0.0015527	-0.39524	-0.00043418	1.0182	0.0011185	1098.5344408877888	32.393	0.1689	32.389	32.341	32.51	-0.0037613	81	85	1.5705823	0.049481153	1.5690628	318.4924	0	10.034058						330	8	3	NaN	NaN	NaN	0.014046	1	12406	12406		80.639	36.336	1	56622			10060	3144	5848	5968	7937	7937					-0.016770892333852316
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3235252276	2	556.323525	1110.6325	1.0699	0.00059519	-7.9358	-0.0044149	-6.8659	-0.0038197	556.8192065167025	27.663	0.14476	27.653	27.605	27.75	-0.009552	1224	64	0.883646	0.038627446	0.88212657	358.3259	0	15.663757						253	7	3	NaN	NaN	NaN	0.21451	1	12942	12942		24.4	0.5498	1	43084			10061	4598	5849	5969	7938	7938					0.0816065731398794
IFIDKIYSI	9	Unmodified						0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.323525	1110.6325	1.3331	0.00074164	-8.4623	-0.0047078	-7.1292	-0.0039662	556.8189688364808	27.639	0.16889	27.639	27.591	27.76	0	1224	73	0.883646	0.0441432	0.883646	358.32593		17.900452	-0.0068899	-0.00033598	0.00075972	NaN	24.4	219	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40559			10062	4598	5849	5969							0.0816065731398794
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.80041427205	2	600.800414	1199.58628	1.64	0.00098531	-0.73585	-0.0004421	0.90415	0.00054321	600.7998063275551	29.763	0.24131	29.763	29.715	29.956	0	1167	97	0.91857195	0.05876869	0.91857195	372.14987	0	23.80954						559	11	3	NaN	NaN	NaN	0.013726	1	16463	16463		66.481	36.446	1	141600			10063	2300	5850	5970	7939	7939					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.80041427205	2	600.800414	1199.58628	0.95004	0.00057078	-0.29758	-0.00017878	0.65246	0.000392	600.800295730463	29.762	0.2654	29.755	29.683	29.948	-0.0070667	1167	91	0.91857195	0.055089712	0.9170525	372.14987	0	22.31903						648	12	3	NaN	NaN	NaN	0.013678	1	15814	15814		66.544	41.982	1	147200			10064	2300	5850	5970	7940	7940					-0.005534075881087119
IFIPSSIAF	9	Unmodified	_IFIPSSIAF_					0	0	0		ENST00000508163.1_1_4:88239551-88261757:-|nuORF;ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENSG00000198189|ENST00000358290|HSD17B11	ENST00000508163.1_1_4:88239551-88261757:-|nuORF	ENST00000508163.1_1_4:88239551-88261757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5607953861	1	994.560795	993.553519	1.587	0.0015784	-0.49565	-0.00049296	1.0914	0.0010854	994.5604098978824	33.069	0.14482	33.069	32.997	33.142	0	216	154	1.4908947	0.09044683	1.4908947	302.72556	0	18.365204						586	7	3	NaN	NaN	NaN	0.020004	1	8349	8349		71.993	16.045	1	100310			10065	5762	5851	5971	7941	7941					0.056484300797023934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8529811588	2	636.852981	1271.69141	2.2088	0.0014067	-3.1241	-0.0019896	-0.91526	-0.00058288	636.8507285718241	26.384	0.24133	26.384	26.36	26.601	0	1113	55	0.9515937	0.032986104	0.9515937	385.2796	0	13.355377						281	11	4	NaN	NaN	NaN	8.4778E-05	1	18267	18267		111.05	63.567	1	99257			10066	3160	5852	5972	7942	7942					0.06643133608326934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8529811588	2	636.852981	1271.69141	1.8846	0.0012002	-2.2054	-0.0014045	-0.32081	-0.00020431	636.8515018136663	26.408	0.28957	26.397	26.349	26.638	-0.011137	1110	55	0.95342636	0.032986104	0.9519069	386.0216	0	13.355377						294	13	4	NaN	NaN	NaN	8.6621E-09	1	17455	17455		136.74	78.138	1	93000			10067	3160	5852	5972	7943	7943					0.06643133608326934
IFIQNSKLYFF	11	Unmodified	_IFIQNSKLYFF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3871881169	2	710.387188	1418.75982	1.4143	0.0010047	-3.5758	-0.0025402	-2.1615	-0.0015355	710.3852176911105	30.149	0.072422	30.149	30.125	30.198	0	1029	46	1.0028336	0.02741009	1.0028336	405.57306	0	11.085388						117	4	3	NaN	NaN	NaN	0.14414	1	20214	20214		35.523	12.437	1	10586			10068	3160	5853	5973	7944	7944					0.06719378188176961
IFIQNSKLYFF	11	Unmodified	_IFIQNSKLYFF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3871881169	2	710.387188	1418.75982	0.86567	0.00061496	-4.068	-0.0028899	-3.2023	-0.0022749	710.8850710332656	30.148	0.096548	30.142	30.118	30.214	-0.0064106	1032	46	1.0010062	0.02740711	0.99948686	404.83405	0	11.0841675						122	5	3	NaN	NaN	NaN	0.20668	1	19250	19250		29.706	14.852	1	10205			10069	3160	5853	5973	7945	7945					0.06719378188176961
IFIRNVLLF	9	Unmodified	_IFIRNVLLF_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8553268825001	2	567.855327	1133.6961	1.0441	0.00059287	-1.5853	-0.00090025	-0.54129	-0.00030737	567.8546088806879	31.308	0.12069	31.308	31.259	31.38	0	1158	46	0.92408	0.027537405	0.92408	374.62875	0	11.163879						194	6	3	NaN	NaN	NaN	0.012648	1	14240	14240		84.879	12.886	1	59885			10070	3340	5854	5974	7946	7946					0.1346006254175336
IFIRNVLLF	9	Unmodified	_IFIRNVLLF_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.8553268825001	2	567.855327	1133.6961	0.76669	0.00043537	-1.6757	-0.00095153	-0.90898	-0.00051617	567.8543943219961	31.379	0.19302	31.374	31.302	31.495	-0.0050716	1155	55	0.92591566	0.033043087	0.9243962	375.37296	0	13.395935						251	9	3	NaN	NaN	NaN	0.032764	1	13780	13780		55.494	18.907	1	65780			10071	3340	5854	5974	7947	7947					0.1346006254175336
IFKMLAEVLG	10	Unmodified	_IFKMLAEVLG_					0	0	0		ENST00000488516.1_1_2:170393692-170394610:-|nuORF;ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8253778123	2	560.825378	1119.6362	1.7171	0.00096298	0.96202	0.00053953	2.6791	0.0015025	560.825586662268	19.468	0.095951	19.468	19.444	19.54	0	1167	37	0.91857195	0.022035897	0.91857195	372.45193	0	8.934845						112	5	3	NaN	NaN	NaN	0.41164	1	13671	13671		23.118	2.6043	1	12466			10072	3155	5855	5975	7948	7948					0.08117003816187207
IFKMLAEVLG	10	Unmodified						0	0	0		ENST00000488516.1_1_2:170393692-170394610:-|nuORF;ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.825378	1119.6362	1.5599	0.00087486	0.63039	0.00035354	2.1903	0.0012284	560.8254934463922	19.707	0.21661	19.693	19.621	19.837	-0.014141	1170	34	0.91673553	0.020202816	0.9152161	371.7073		8.19162	0.11242	-0.00019525	-0.0016779	NaN	23.118	123	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10064			10073	3155	5855	5975							0.08117003816187207
IFKPPDPDNTF	11	Unmodified	_IFKPPDPDNTF_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.82187799565	2	645.821878	1289.6292	1.7334	0.0011195	-3.0651	-0.0019795	-1.3316	-0.00086001	645.8204298043182	22.766	0.16873	22.752	22.655	22.824	-0.01354	1149	49	0.92958635	0.029355824	0.9280669	376.31308	0	11.883759						156	8	2	NaN	NaN	NaN	0.61751	1	17759	17759		12.872	5.2845	1	19617			10074	4436	5856	5976	7949	7949					-0.004026375306921182
IFKYFIFN	8	Unmodified	_IFKYFIFN_					0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2998531660501	2	546.299853	1090.58515	1.5845	0.00086563	-10.144	-0.0055418	-8.5598	-0.0046762	546.7974789947999	25.274	0.096542	25.274	25.178	25.274	0	1221	73	0.885486	0.04417187	0.885486	359.15295	0	17.916077						114	5	2	NaN	NaN	NaN	0.80071	1	12433	12433		9.1232	1.5828	1	19052	+		10075	10185	5857	5977	7950	7950					0.0434842283366379
IFKYFIFN	8	Unmodified						0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.299853	1090.58515	1.5845	0.00086563	-10.144	-0.0055418	-8.5598	-0.0046762	546.7974789947999	25.274	0.096542	25.274	25.178	25.274	0	1221	73	0.885486	0.04417187	0.885486	359.15295		17.916077	0.0061395	0.0025608	0.0016797	NaN	9.1232	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19052	+		10076	10185	5857	5977							0.0434842283366379
IFKYFIFN	8	Unmodified						0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.299853	1090.58515	1.7156	0.00093725	-13.704	-0.0074865	-11.988	-0.0065492	546.2923102182286	25.274	0.12058	25.262	25.214	25.334	-0.012011	1224	70	0.883646	0.042324543	0.88212657	358.40668		17.16681	-0.0061395	-0.0013285	-0.0016797	NaN	9.1232	163	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27240	+		10077	10185	5857	5977							0.0434842283366379
IFLEESLSF	9	Unmodified	_IFLEESLSF_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5561039386998	1	1084.5561	1083.54883	1.3077	0.0014183	0.26531	0.00028774	1.573	0.001706	1084.5564581475471	32.466	0.14476	32.466	32.37	32.514	0	75	79	1.5741152	0.04594183	1.5741152	319.25995	0	9.317841						164	7	2	NaN	NaN	NaN	0.049695	1	12123	12123		47.04	10.454	1	23042			10078	1050	5858	5978	7951	7951					0.010395011462833281
IFLLDWIR	8	Unmodified	_IFLLDWIR_					0	0	0			REV__ENST00000558202.1_1_15:35240356-35256599:-|nuORF	REV__ENST00000558202.1_1_15:35240356-35256599:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.31857723545	2	538.318577	1074.6226	2.037	0.0010966	4.2816	0.0023049	6.3186	0.0034014	538.320761277121	19.108	0.023981	19.108	19.108	19.132	0	1506	34	0.70979416	0.020447075	0.70979416	287.94568	0	8.294891						36	2	2	NaN	NaN	NaN	0.84692	1	11766	11766		1.4396	0.19772	1	3081.4	+		10079	12773	5859	5979	7952	7952					0.08827514099266409
IFLLTNNNLLL	11	Unmodified	_IFLLTNNNLLL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3871881169001	2	644.387188	1286.75982	1.7248	0.0011114	-2.4714	-0.0015926	-0.74662	-0.00048112	644.3860653516994	36.688	0.14439	36.688	36.639	36.784	0	1095	70	0.9625867	0.042133093	0.9625867	389.6814	0	17.05661						173	7	3	NaN	NaN	NaN	0.25335	1	18550	18550		27.296	6.7829	1	16758			10080	2576	5860	5980	7953	7953					0.12791378188194358
IFLLTNNNLLL	11	Unmodified	_IFLLTNNNLLL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3871881169001	2	644.387188	1286.75982	1.8587	0.0011977	-1.9482	-0.0012554	-0.089564	-5.7714E-05	644.3858765959352	36.685	0.12019	36.687	36.639	36.759	0.0016785	1092	73	0.9644182	0.04395783	0.96289873	390.42285	0	17.795319						172	6	3	NaN	NaN	NaN	0.11611	1	17723	17723		38.131	20.161	1	16227			10081	2576	5860	5980	7954	7954					0.12791378188194358
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.8267664083002	2	598.826766	1195.63898	1.3272	0.00079478	-1.6319	-0.0009772	-0.30463	-0.00018242	598.8262207484695	27.181	0.12064	27.181	27.157	27.277	0	1179	64	0.9112251	0.038585663	0.9112251	369.18723	0	15.633179						295	6	5	NaN	NaN	NaN	0.00241	1	16340	16340		134.97	82.193	1	139360			10082	3199	5861	5981	7955	7955					0.04898595265376571
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.8267664083002	2	598.826766	1195.63898	0.97895	0.00058622	-2.0165	-0.0012075	-1.0376	-0.00062131	598.825542303967	27.228	0.33783	27.218	27.17	27.508	-0.010124	1179	61	0.9112251	0.03674233	0.90970564	369.18723	0	14.886322						389	15	6	NaN	NaN	NaN	0.00241	1	15697	15697		134.97	85.012	1	147070			10083	3199	5861	5981	7956	7956					0.04898595265376571
IFLPILRTGF	10	Unmodified	_IFLPILRTGF_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.86060922565	2	588.860609	1175.70667	1.2142	0.000715	-1.8128	-0.0010675	-0.59862	-0.00035251	588.8596741674401	32.152	0.096512	32.152	32.128	32.225	0	1203	46	0.8965218	0.02757907	0.8965218	363.30038	0	11.175964						146	5	3	NaN	NaN	NaN	0.34981	1	15681	15681		25.681	7.8824	1	17069			10084	4489	5862	5982	7957	7957					0.12584045196172156
IFLPILRTGF	10	Unmodified	_IFLPILRTGF_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.86060922565	2	588.860609	1175.70667	0.61901	0.00036451	-0.46603	-0.00027442	0.15299	9.0089E-05	588.8604126943173	32.2	0.14478	32.196	32.123	32.268	-0.0037613	1200	43	0.89836043	0.025736272	0.896841	364.04544	0	10.429199						172	7	3	NaN	NaN	NaN	0.31689	1	15110	15110		27.046	9.2475	1	16398			10085	4489	5862	5982	7958	7958					0.12584045196172156
IFLPPPYP	8	Unmodified	_IFLPPPYP_					0	0	0		ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.2680217214	2	472.268022	942.521491	0.23395	0.00011049	-5.726	-0.0027042	-5.492	-0.0025937	472.26488147524793	28.17	0.096571	28.161	28.137	28.233	-0.0089779	1311	52	0.83019954	0.031384945	0.8286801	337.38788	0	12.754639						98	5	3	NaN	NaN	NaN	0.71635	1	6752	6752		18.034	4.2974	1	8434			10086	7667	5863	5983	7959	7959					0.04793062396561254
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.6499447444	1	1043.64994	1042.64267	1.9458	0.0020308	-0.43056	-0.00044935	1.5153	0.0015814	1043.6496726715434	34.541	0.12066	34.541	34.493	34.614	0	75	70	1.5741152	0.0406214	1.5741152	319.41745	0	8.242859						293	6	4	NaN	NaN	NaN	1.0592E-07	1	10340	10340		137.62	0.87733	1	60054			10087	5964	5864	5984	7960	7960					0.12305265039231017
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.6499447444	1	1043.64994	1042.64267	1.314	0.0013714	0.98316	0.0010261	2.2972	0.0023974	1043.6503674805303	34.516	0.16882	34.515	34.467	34.636	-0.0006485	72	67	1.5758814	0.03885734	1.5743619	319.77585	0	7.8848877						306	8	4	NaN	NaN	NaN	0.016254	1	10137	10137		76.739	0	1	58082			10088	5964	5864	5984	7961	7961					0.12305265039231017
IFLSYFGIP	9	Unmodified	_IFLSYFGIP_					0	0	0			REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5764454503	1	1056.57645	1055.56917	1.7005	0.0017967	-10.383	-0.01097	-8.6825	-0.0091737	1056.5629425308775	37.479	0.048191	37.482	37.458	37.506	0.0028229	96	64	1.5617468	0.037132382	1.5602274	316.85706	0	7.533661						79	3	2	NaN	NaN	NaN	0.11467	1	10680	10680		33.698	2.1373	1	5105.7	+		10089	13465	5865	5985	7962	7962					0.04360716596761449
IFLSYFGIP	9	Unmodified						0	0	0			REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1056.57645	1055.56917	1.4716	0.0015549	-13.688	-0.014462	-12.216	-0.012907	1056.5610584327085	37.458	0.16852	37.458	37.41	37.578	0	90	49	1.5652816	0.028283834	1.5652816	317.57422		5.7384033	-0.012196	-0.0014598	0.0025271	NaN	33.698	70	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3895.9	+		10090	13465	5865	5985							0.04360716596761449
IFLSYFGIP	9	Unmodified						0	0	0			REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	REV__tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.57645	1055.56917	1.7005	0.0017967	-10.383	-0.01097	-8.6825	-0.0091737	1056.5629425308775	37.479	0.048191	37.482	37.458	37.506	0.0028229	96	64	1.5617468	0.037132382	1.5602274	316.85706		7.533661	0.012196	0.0020319	-0.0025271	NaN	33.698	79	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5105.7	+		10091	13465	5865	5985							0.04360716596761449
IFMKGTPHI	9	Unmodified	_IFMKGTPHI_					0	0	0			REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF	REV__ENST00000463632.1_1_7:7678661-7680452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2889625162501	2	522.288963	1042.56337	1.4475	0.00075603	-1.801	-0.00094063	-0.35344	-0.0001846	522.2882597490238	20.646	0.24096	20.646	20.549	20.79	0	1251	70	0.8670771	0.04237485	0.8670771	351.88828	0	17.197083						428	11	4	NaN	NaN	NaN	0.10363	1	10332	10332		35.296	1.8712	1	118800	+		10092	8990	5866	5986	7963	7963					0.04379294813429624
IFNGFSVTL	9	Unmodified	_IFNGFSVTL_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5353089171002	1	997.535309	996.528032	1.281	0.0012778	0.42558	0.00042453	1.7066	0.0017024	997.5356359275271	31.67	0.1207	31.67	31.646	31.766	0	189	127	1.5068626	0.07450533	1.5068626	305.95535	0	15.127686						225	6	2	NaN	NaN	NaN	0.10956	1	8450	8450		34.439	5.5432	1	27922			10093	836	5867	5987	7964	7964					0.029629555573023936
IFNGFSVTL	9	Unmodified	_IFNGFSVTL_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5353089171002	1	997.535309	996.528032	0.77029	0.00076839	0.31289	0.00031212	1.0832	0.0010805	997.5359744837767	31.669	0.072372	31.664	31.64	31.712	-0.0044155	189	91	1.5068626	0.0532012	1.5053432	305.95535	0	10.802032						201	4	3	NaN	NaN	NaN	0.048656	1	8278	8278		47.482	12.185	1	22407			10094	836	5867	5987	7965	7965					0.029629555573023936
IFPAVILM	8	Unmodified	_IFPAVILM_					0	0	0		tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.2722498195501	2	452.27225	902.529947	1.2222	0.00055278	-6.5324	-0.0029544	-5.3102	-0.0024017	452.26926679070937	22.187	0.072395	22.173	22.149	22.222	-0.013731	1359	34	0.8006399	0.020338774	0.7991205	325.58215	0	8.270813						67	4	2	NaN	NaN	NaN	0.77734	1	6007	6007		12.26	3.9822	1	5591.9			10095	13749	5868	5988	7966	7966					0.07478293041549477
IFPDDMIN	8	Unmodified	_IFPDDMIN_					0	0	0			REV__ENSG00000166200|ENST00000388901|COPS2	REV__ENSG00000166200|ENST00000388901|COPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.72586073294997	2	482.725861	963.437169	0.86704	0.00041854	-1.6197	-0.00078186	-0.75263	-0.00036331	482.7247464444781	31.308	0.2172	31.308	31.187	31.404	0	1341	43	0.8117308	0.025870264	0.8117308	329.77933	0	10.510223						158	10	2	NaN	NaN	NaN	0.74229	1	7421	7421		16.417	0	1	16336	+		10096	10419	5869	5989	7967	7967					-0.04601256482510507
IFPLETPAF	9	Unmodified	_IFPLETPAF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5557100081999	1	1034.55571	1033.54843	1.4637	0.0015143	0.020707	2.1423E-05	1.4845	0.0015357	1034.5563333019822	32.635	0.31369	32.635	32.442	32.756	0	165	91	1.5210435	0.05316174	1.5210435	308.6837	0	10.788757						450	14	3	NaN	NaN	NaN	0.002833	1	9936	9936		108.51	52.918	1	53713			10097	4250	5870	5990	7968	7968					0.033001262170728296
IFPLETPAF	9	Unmodified	_IFPLETPAF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5557100081999	1	1034.55571	1033.54843	0.9842	0.0010182	0.15764	0.00016309	1.1418	0.0011813	1034.5561573536825	32.658	0.21722	32.655	32.51	32.727	-0.0031052	162	109	1.5228153	0.06377375	1.5212959	309.04324	0	12.942383						458	10	3	NaN	NaN	NaN	0.0081087	1	9730	9730		96.245	40.298	1	55486			10098	4250	5870	5990	7969	7969					0.033001262170728296
IFQEQHRSIQ	10	Unmodified	_IFQEQHRSIQ_					0	0	0			REV__KEAP1-RAD23A|1|fusion	REV__KEAP1-RAD23A|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.33601821365	2	643.336018	1284.65748	2.5492	0.00164	2.775	0.0017852	5.3241	0.0034252	643.338188913297	26.118	0.12065	26.107	26.083	26.204	-0.011137	1122	88	0.9460945	0.0531587	0.9445751	383.01157	0	21.520447						202	6	3	NaN	NaN	NaN	0.64158	1	17691	17691		12.049	1.6885	1	27672	+		10099	10805	5871	5991	7970	7970					0.026541051692674955
IFRGFFTL	8	Unmodified	_IFRGFFTL_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.78437027735	2	500.78437	999.554188	0.92869	0.00046507	5.9579	0.0029836	6.8866	0.0034487	500.7868365936852	33.238	0.12066	33.238	33.214	33.335	0	1311	37	0.83019954	0.022148132	0.83019954	337.111	0	8.993469						73	6	2	NaN	NaN	NaN	0.73961	1	8582	8582		16.417	2.3751	1	6392.7	+		10100	13184	5872	5992	7971	7971					0.054392695194110274
IFRWPESP	8	Unmodified	_IFRWPESP_					0	0	0		nc|ENSG00000211898|P01880-1|IGHD;nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880-1|IGHD	nc|ENSG00000211898|P01880-1|IGHD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2690843539	2	516.269084	1030.52362	1.9412	0.0010022	7.3005	0.003769	9.2418	0.0047712	516.2731571479818	16.086	0.1439	16.086	16.062	16.206	0	1296	52	0.8394264	0.031361163	0.8394264	340.71857	0	12.72934						105	7	3	NaN	NaN	NaN	0.83211	1	9802	9802		4.9097	1.3365	1	8806.3			10101	8031	5873	5993	7972	7972					0.009574911343634085
IFSDNWIGI	9	Unmodified	_IFSDNWIGI_					0	0	0			REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	REV__tr|U7SSK8|U7SSK8_FUSNUNADH:flavinoxidoreductase/NADHoxidaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01301PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.77419952155	2	532.7742	1063.53385	1.7425	0.00092834	-6.7482	-0.0035953	-5.0057	-0.0026669	532.7706078205598	30.415	0.14478	30.415	30.342	30.487	0	1236	82	0.876284	0.049728274	0.876284	355.5334	0	20.176178						222	7	2	NaN	NaN	NaN	0.49672	1	11281	11281		9.746	0.78402	1	32200	+		10102	13478	5874	5994	7973	7973					0.004620540689529662
IFSKIVSLF	9	Unmodified	_IFSKIVSLF_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3207855734	2	527.320786	1052.62702	1.4255	0.00075169	-1.0628	-0.00056045	0.36268	0.00019125	527.3201063163426	29.594	0.12067	29.594	29.546	29.667	0	1215	85	0.8891654	0.051544964	0.8891654	360.80746	0	20.916016						241	6	3	NaN	NaN	NaN	0.034172	1	10765	10765		53.652	21.976	1	29264			10103	2665	5875	5995	7974	7974					0.10280978522177975
IFSKYLLF	8	Unmodified	_IFSKYLLF_					0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|104|3|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|104|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.8022286795	2	515.802229	1029.5899	1.7537	0.00090458	-5.705	-0.0029426	-3.9512	-0.0020381	515.7990496208987	25.033	0.43426	25.021	24.876	25.31	-0.012011	1299	91	0.8375814	0.05531043	0.83606195	339.97382	0	22.45047						679	19	5	NaN	NaN	NaN	0.3434	1	9576	9576		39.459	0	1	219940	+		10104	13044	5876	5996	7975	7975					0.07629306976400585
IFSLENFKP	9	Unmodified	_IFSLENFKP_					0	0	0		ENST00000422797.5_1_2:109288812-109289630:+|nuORF	ENST00000422797.5_1_2:109288812-109289630:+|nuORF	ENST00000422797.5_1_2:109288812-109289630:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.79767461785	2	547.797675	1093.5808	2.123	0.001163	1.7641	0.00096639	3.8872	0.0021294	547.7991700026539	26.022	0.048277	26.022	25.998	26.046	0	1203	28	0.8965218	0.016551018	0.8965218	363.61658	0	6.71286						37	3	2	NaN	NaN	NaN	0.41766	1	12567	12567		13.003	1.4544	1	2302.4			10105	6924	5877	5997	7976	7976					0.03774913620077314
IFSNVRINL	9	Unmodified	_IFSNVRINL_					0	0	0		nc|ENSG00000105974|Q03135-2|CAV1;ENSG00000105974|ENST00000341049|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.31656586275	2	538.316566	1074.61858	1.631	0.00087798	-3.1456	-0.0016933	-1.5147	-0.00081536	538.3145616051769	24.791	0.096537	24.791	24.767	24.864	0	1218	55	0.8873258	0.03312534	0.8873258	359.96585	0	13.43811						144	5	3	NaN	NaN	NaN	0.13602	1	11763	11763		30.61	2.8213	1	22427			10106	1580	5878	5998	7977	7977					0.0842542460554796
IFSNVRINL	9	Unmodified	_IFSNVRINL_					0	0	0		nc|ENSG00000105974|Q03135-2|CAV1;ENSG00000105974|ENST00000341049|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.31656586275	2	538.316566	1074.61858	1.1349	0.00061095	-1.9701	-0.0010606	-0.83522	-0.00044961	538.3152042444035	24.815	0.072374	24.803	24.779	24.851	-0.012394	1218	61	0.8873258	0.03680587	0.8858064	359.96585	0	14.931244						117	4	3	NaN	NaN	NaN	0.071077	1	11456	11456		40.006	8.3304	1	16334			10107	1580	5878	5998	7978	7978					0.0842542460554796
IFSQKLGYLLF	11	Unmodified	_IFSQKLGYLLF_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.8842812872001	2	664.884281	1327.75401	1.3117	0.00087215	-1.807	-0.0012014	-0.49522	-0.00032927	664.8827881176488	31.283	0.19306	31.277	31.205	31.398	-0.0050716	1104	43	0.9570911	0.02564758	0.95557165	387.32956	0	10.379456						237	9	4	NaN	NaN	NaN	0.0044011	1	18369	18369		74.737	32.419	1	38864			10108	4867	5879	5999	7979	7979					0.10324279676524384
IFSQKLGYLLF	11	Unmodified						0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.884281	1327.75401	0.91894	0.00061099	-2.5519	-0.0016967	-1.6329	-0.0010857	664.8819111888606	31.235	0.16892	31.235	31.187	31.356	0	1104	40	0.9570911	0.023819447	0.9570911	387.32956		9.639587	-0.021078	-0.00051664	0.00075972	NaN	74.737	231	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39434			10109	4867	5879	5999							0.10324279676524384
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.32131688965	2	597.321317	1192.62808	1.3493	0.00080599	-1.5023	-0.00089736	-0.15296	-9.1369E-05	597.3203970010563	27.905	0.09654	27.905	27.833	27.929	0	1161	94	0.9222442	0.056892276	0.9222442	373.66245	0	23.050842						134	5	4	NaN	NaN	NaN	0.1507	1	16232	16232		28.495	8.0466	1	20296			10110	2566	5880	6000	7980	7980					0.03947192891064333
IFTARLYYF	9	Unmodified						0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.321317	1192.62808	1.3342	0.00079693	-5.2947	-0.0031626	-3.9605	-0.0023657	597.3184040424054	27.952	0.048246	27.943	27.919	27.967	-0.009552	1116	28	0.94976085	0.01649928	0.9482414	384.81128		6.684967	0.018976	-0.0026882	0.012999	NaN	28.495	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3608.7			10111	2566	5880	6000							0.03947192891064333
IFTDIFHYL	9	Unmodified	_IFTDIFHYL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8054996499501	2	584.8055	1167.59645	1.1543	0.00067504	-6.8374	-0.0039986	-5.6831	-0.0033235	584.8021783796224	33.383	0.048283	33.383	33.383	33.431	0	1191	58	0.90387505	0.034910858	0.90387505	366.30966	0	14.148193						85	3	2	NaN	NaN	NaN	0.14945	1	15398	15398		28.667	6.8315	1	8226.3			10112	1944	5881	6001	7981	7981					0.019352001371316874
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3025928202501	2	527.302593	1052.59063	1.6299	0.00085947	-1.575	-0.00083051	0.054923	2.8961E-05	527.3016789974164	27.639	0.14479	27.639	27.615	27.76	0	1272	82	0.854179	0.049744427	0.854179	346.61078	0	20.185394						310	7	5	NaN	NaN	NaN	0.024221	1	10757	10757		66.656	31.36	1	101400			10113	2457	5882	6002	7982	7982					0.06644101625465737
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.3025928202501	2	527.302593	1052.59063	1.0974	0.00057868	1.6564	0.00087344	2.7539	0.0014521	527.3034517494975	27.663	0.33786	27.653	27.508	27.846	-0.009552	1272	88	0.854179	0.053423405	0.8526596	346.61078	0	21.678253						573	15	4	NaN	NaN	NaN	0.01966	1	10533	10533		72.428	37.132	1	154170			10114	2457	5882	6002	7983	7983					0.06644101625465737
IFTFTGFAPI	10	Unmodified	_IFTFTGFAPI_					0	0	0			REV__CCDC81|p.I444Vfs*34|1|0.06|ENSG00000149201|chr11:86412496-86412497|-/GGTT|frameshift_variant	REV__CCDC81|p.I444Vfs*34|1|0.06|ENSG00000149201|chr11:86412496-86412497|-/GGTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3025928202501	2	557.302593	1112.59063	0.95861	0.00053423	-1.6817	-0.00093721	-0.72309	-0.00040298	557.3022470838681	30.341	0.12066	30.335	30.311	30.431	-0.0064106	1200	76	0.89836043	0.045970082	0.896841	364.28485	0	18.64087						195	6	3	NaN	NaN	NaN	0.56921	1	13007	13007		16.584	1.4088	1	22009	+		10115	8183	5883	6003	7984	7984					0.03884101625476433
IFTSKTDTW	9	Unmodified	_IFTSKTDTW_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.77693917575	2	549.776939	1097.53933	0.68412	0.00037611	5.5743	0.0030646	6.2584	0.0034407	549.7800432373065	35.434	0.072323	35.434	35.41	35.482	0	1272	34	0.854179	0.020277202	0.854179	346.4274	0	8.223755						58	4	2	NaN	NaN	NaN	0.62619	1	12745	12745		4.4131	1.2015	1	3606.8			10116	4764	5884	6004	7985	7985					-0.005542671392504417
IFTSPGSFLCL	11	Unmodified	_IFTSPGSFLCL_					0	0	0			REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8046423702002	2	592.804642	1183.59473	1.4979	0.00088796	6.4508	0.0038241	7.9487	0.004712	592.80796565183	25.37	0.19304	25.358	25.286	25.479	-0.012011	1167	88	0.91857195	0.05327928	0.9170525	372.20703	0	21.588867						352	9	4	NaN	NaN	NaN	0.25335	1	15359	15359		27.296	6.7408	1	62679	+		10117	8579	5885	6005	7986	7986					0.010278230568928848
IFTSPGSFLCL	11	Unmodified						0	0	0			REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.804642	1183.59473	1.7649	0.0010463	5.2189	0.0030938	6.9838	0.00414	592.8076288106133	25.346	0.19301	25.346	25.298	25.491	0	1167	85	0.91857195	0.051439285	0.91857195	372.20703		20.843292	-0.0059291	-0.00067017	0.00075972	NaN	27.296	384	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65018	+		10118	8579	5885	6005							0.010278230568928848
IFTSPGSFLCL	11	Unmodified						0	0	0			REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	REV__ENST00000421744.5_1_7:73101164-73110778:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.804642	1183.59473	1.4979	0.00088796	6.4508	0.0038241	7.9487	0.004712	592.80796565183	25.37	0.19304	25.358	25.286	25.479	-0.012011	1167	88	0.91857195	0.05327928	0.9170525	372.20703		21.588867	0.0059291	0.00079043	-0.00075972	NaN	27.296	352	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62679	+		10119	8579	5885	6005							0.010278230568928848
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.3316846107	2	596.331685	1190.64882	1.0985	0.00065507	-3.199	-0.0019077	-2.1005	-0.0012526	596.3297894808868	29.16	0.1448	29.16	29.112	29.256	0	1158	55	0.92408	0.03303951	0.92408	374.4134	0	13.38678						168	7	3	NaN	NaN	NaN	0.04947	1	16171	16171		47.136	10.549	1	24903			10120	39	5886	6006	7987	7987					0.06111783270739579
IFVARLYYF	9	Unmodified						0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	596.331685	1190.64882	0.7292	0.00043484	-4.7943	-0.002859	-4.0651	-0.0024242	596.3292203592894	29.183	0.14481	29.175	29.127	29.272	-0.0077209	1158	52	0.92408	0.031205654	0.9225606	374.4134		12.643738	0.0078152	-0.001034	-0.00075972	NaN	47.136	207	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28762			10121	39	5886	6006							0.06111783270739579
IFVEAAAL	8	Unmodified	_IFVEAAAL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.4767314057	1	833.476731	832.469455	1.0571	0.00088108	-1.5483	-0.0012905	-0.49116	-0.00040937	833.4744039947152	31.403	0.072386	31.398	31.374	31.446	-0.0050716	447	43	1.3536539	0.025057912	1.3521345	275.58554	0	5.1014404						73	4	2	NaN	NaN	NaN	0.82332	1	5054	5054		6.0903	1.1806	1	5307.6	+		10122	13206	5887	6007	7988	7988					0.0465189898279732
IFVKTLVTF	9	Unmodified	_IFVKTLVTF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.3286106055001	2	534.328611	1066.64267	1.6943	0.00090534	-0.64016	-0.00034206	1.0542	0.00056328	534.3281301505248	27.471	0.072422	27.471	27.446	27.519	0	1224	40	0.883646	0.023922563	0.883646	358.50696	0	9.705688						110	4	3	NaN	NaN	NaN	0.34922	1	11426	11426		15.822	4.2735	1	15579			10123	4766	5888	6008	7989	7989					0.1120126503924439
IFVKTLVTF	9	Unmodified	_IFVKTLVTF_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.3286106055001	2	534.328611	1066.64267	0.73885	0.00039479	0.22284	0.00011907	0.96169	0.00051386	534.328253938574	27.518	0.16892	27.508	27.46	27.629	-0.009552	1221	43	0.885486	0.025761366	0.88396657	359.25345	0	10.451721						96	8	2	NaN	NaN	NaN	0.16939	1	11156	11156		27.296	12.871	1	13527			10124	4766	5888	6008	7990	7990					0.1120126503924439
IFVQGLIEI	9	Unmodified	_IFVQGLIEI_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.6135592381	1	1031.61356	1030.60628	0.96868	0.0009993	1.4326	0.0014778	2.4012	0.0024771	1031.615319714281	37.771	0.096191	37.771	37.747	37.843	0	111	40	1.5529068	0.022989154	1.5529068	315.16193	0	4.6656494						81	5	2	NaN	NaN	NaN	0.53206	1	9821	9821		8.2903	0	1	5475.4	+		10125	10046	5889	6009	7991	7991					0.09220388142512093
IFYELPTYPHF	11	Unmodified	_IFYELPTYPHF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.8557208130001	2	713.855721	1425.69689	1.3557	0.00096781	0.27773	0.00019826	1.6335	0.0011661	713.8559807359517	29.522	0.024101	29.522	29.522	29.546	0	927	28	1.0648463	0.016386032	1.0648463	430.6324	0	6.626648						31	2	2	NaN	NaN	NaN	0.14658	1	20256	20256		35.296	26.377	1	2419.4			10126	2151	5890	6010	7992	7992					0.0010681240014491777
IGAKFWEVI	9	Unmodified	_IGAKFWEVI_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;CON__ENSEMBL:ENSBTAP00000025008;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.8027599957501	2	531.80276	1061.59097	1.9363	0.0010298	-1.5929	-0.00084712	0.34342	0.00018263	531.8018363737342	28.219	0.14477	28.219	28.194	28.339	0	1281	43	0.84864825	0.025808692	0.84864825	344.3288	0	10.471588						139	7	3	NaN	NaN	NaN	0.25548	1	11196	11196		21.771	2.6527	1	22293			10127	5542;1496;3078;6137	5891	6011	7993	7993					0.06263521345317713
IGANCMSDIF	10	Unmodified	_IGANCMSDIF_					0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4645285143997	1	1070.46453	1069.45725	0.94001	0.0010062	2.2758	0.0024361	3.2158	0.0034424	1070.4678931803796	35.794	0.096367	35.794	35.746	35.843	0.00052643	195	52	1.5033154	0.030152082	1.501796	304.951	0	6.1164246						103	5	2	NaN	NaN	NaN	0.70677	1	11235	11235		7.5876	0.047225	1	7703.3	+		10128	13631	5892	6012	7994	7994					-0.07469828814214452
IGANCMSDIF	10	Unmodified						0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1070.46453	1069.45725	1.3456	0.0014404	4.1133	0.0044031	5.4589	0.0058435	1070.4694079328585	35.771	0.09647	35.771	35.747	35.844	0	201	55	1.4997677	0.031930804	1.4997677	304.23126		6.477234	-0.011539	0.00069722	-0.0010142	NaN	7.5876	123	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7921.7	+		10129	13631	5892	6012							-0.07469828814214452
IGANCMSDIF	10	Unmodified						0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1070.46453	1069.45725	0.94001	0.0010062	2.2758	0.0024361	3.2158	0.0034424	1070.4678931803796	35.794	0.096367	35.794	35.746	35.843	0.00052643	195	52	1.5033154	0.030152082	1.501796	304.951		6.1164246	0.011539	-0.0012698	0.0010142	NaN	7.5876	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7703.3	+		10130	13631	5892	6012							-0.07469828814214452
IGAPSAKK	8	Unmodified	_IGAPSAKK_					0	0	0			REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.2397955982	2	386.239796	770.465038	1.7773	0.00068646	-4.179	-0.0016141	-2.4017	-0.00092765	386.2384665675077	21.513	0.072342	21.499	21.475	21.547	-0.014006	1413	37	0.7673241	0.022232234	0.76580465	312.8344	0	9.063995						71	4	2	NaN	NaN	NaN	0.79379	1	4292	4292		10.052	0	1	6827	+		10131	13547	5893	6013	7995	7995					0.07062434559895792
IGAVPATGF	9	Unmodified	_IGAVPATGF_					0	0	0		nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4563303146	1	832.45633	831.449054	1.5708	0.0013076	1.8601	0.0015484	3.4308	0.002856	832.4569679376921	24.815	0.072374	24.803	24.779	24.851	-0.012394	492	61	1.3267875	0.035850525	1.325268	270.12128	0	7.2987976						71	4	2	NaN	NaN	NaN	0.65818	1	5039	5039		2.7852	0	1	5214			10132	5326	5894	6014	7996	7996					0.026587283229901004
IGAVPATGF	9	Unmodified						0	0	0		nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.45633	831.449054	1.6779	0.0013968	0.13064	0.00010875	1.8086	0.0015055	832.4571080769397	24.816	0.072399	24.816	24.791	24.864	0	489	55	1.3285799	0.032265425	1.3285799	270.4862		6.568939	0.0062768	-0.00065157	0.0016559	NaN	2.7852	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8316.6			10133	5326	5894	6014							0.026587283229901004
IGCDACKD	8	Unmodified	_IGCDACKD_					0	0	0		PHF2|p.E22G|1|0.39|ENSG00000197724|chr9:93576838-93576838|A/G|missense_variant	PHF2|p.E22G|1|0.39|ENSG00000197724|chr9:93576838-93576838|A/G|missense_variant	PHF2|p.E22G|1|0.39|ENSG00000197724|chr9:93576838-93576838|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.66748857429997	2	412.667489	823.320424	1.3317	0.00054956	-0.42513	-0.00017544	0.90659	0.00037412	412.6671884846919	27.035	0.072433	27.025	27.001	27.074	-0.010124	1416	43	0.76547134	0.025937617	0.7639519	311.7291	0	10.562805						63	4	2	NaN	NaN	NaN	0.84455	1	4943	4943		2.7852	1.5433	1	4788.1			10134	8093	5895	6015	7997	7997					-0.09830317973910496
IGDKIYYLL	9	Unmodified	_IGDKIYYLL_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B;REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3157001955001	2	549.3157	1096.61685	1.0538	0.00057887	-3.455	-0.0018979	-2.4012	-0.001319	549.3150155771464	28.025	0.096529	28.016	27.992	28.088	-0.0089779	1218	40	0.8873258	0.023914814	0.8858064	359.87445	0	9.699158						115	5	3	NaN	NaN	NaN	0.35794	1	12378	12378		15.463	1.0377	1	19487	+		10135	13085;9481	5896	6016	7998	7998					0.07240370796944262
IGDKIYYLL	9	Unmodified						0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B;REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.3157	1096.61685	1.0538	0.00057887	-3.455	-0.0018979	-2.4012	-0.001319	549.3150155771464	28.025	0.096529	28.016	27.992	28.088	-0.0089779	1218	40	0.8873258	0.023914814	0.8858064	359.87445		9.699158	0.0072032	-0.0012627	0.00016018	NaN	15.463	115	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19487	+		10136	13085;9481	5896	6016							0.07240370796944262
IGDSCYFTFQD	11	Unmodified	_IGDSCYFTFQD_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.2660783156999	2	648.266078	1294.5176	2.4491	0.0015877	0.0049794	3.228E-06	2.4541	0.0015909	648.2663632868682	18.002	0.096027	17.988	17.964	18.06	-0.013786	1116	34	0.94976085	0.020163655	0.9482414	384.46466	0	8.162262						58	5	2	NaN	NaN	NaN	0.74794	1	17828	17828		4.3102	0.38204	1	4838.6	+		10137	10881	5897	6017	7999	7999					-0.11787439950148837
IGDTPVVL	8	Unmodified	_IGDTPVVL_					0	0	0		NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant;ENSG00000205978|ENST00000382554|NYNRIN	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.4716460278001	1	813.471646	812.46437	2.3798	0.0019359	-1.0411	-0.00084687	1.3387	0.001089	813.4712100562886	25.612	0.072416	25.612	25.588	25.66	0	465	73	1.3429124	0.04297936	1.3429124	273.50803	0	8.7535095						124	4	3	NaN	NaN	NaN	0.078841	1	4921	4921		69.745	16.421	1	11133			10138	5939	5898	6018	8000	8000					0.05063595120202535
IGDTPVVL	8	Unmodified	_IGDTPVVL_					0	0	0		NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant;ENSG00000205978|ENST00000382554|NYNRIN	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.4716460278001	1	813.471646	812.46437	2.2191	0.0018052	1.5911	0.0012943	3.8102	0.0030995	813.4728974493822	25.636	0.096462	25.624	25.576	25.672	-0.0116	462	67	1.3447032	0.039397717	1.3431838	273.87274	0	8.024048						110	5	2	NaN	NaN	NaN	0.12449	1	4820	4820		59.445	9.4126	1	12243			10139	5939	5898	6018	8001	8001					0.05063595120202535
IGEQLTWLG	9	Unmodified	_IGEQLTWLG_					0	0	0			REV__ENSG00000259224|ENST00000412468|SLC35G6	REV__ENSG00000259224|ENST00000412468|SLC35G6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5411225765001	1	1016.54112	1015.53385	1.7576	0.0017866	3.7808	0.0038433	5.5384	0.00563	1016.5447669394821	34.685	0.26515	34.684	34.563	34.828	-0.0006485	138	73	1.5369828	0.042479753	1.5354633	311.99127	0	8.622955						438	12	3	NaN	NaN	NaN	0.56671	1	9030	9030		6.8632	0.613	1	75280	+		10140	11389	5899	6019	8002	8002					0.026700540689603258
IGEQLTWLG	9	Unmodified						0	0	0			REV__ENSG00000259224|ENST00000412468|SLC35G6	REV__ENSG00000259224|ENST00000412468|SLC35G6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.54112	1015.53385	2.2539	0.0022912	3.2488	0.0033026	5.5028	0.0055938	1016.5442282354824	34.734	0.28948	34.734	34.565	34.855	0	141	76	1.5352125	0.044261456	1.5352125	311.63193		8.984619	0.025114	-0.00024627	-0.00012542	NaN	6.8632	436	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83189	+		10141	11389	5899	6019							0.026700540689603258
IGEQLTWLG	9	Unmodified						0	0	0			REV__ENSG00000259224|ENST00000412468|SLC35G6	REV__ENSG00000259224|ENST00000412468|SLC35G6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1016.54112	1015.53385	1.7576	0.0017866	3.7808	0.0038433	5.5384	0.00563	1016.5447669394821	34.685	0.26515	34.684	34.563	34.828	-0.0006485	138	73	1.5369828	0.042479753	1.5354633	311.99127		8.622955	-0.025114	0.00029449	0.00012542	NaN	6.8632	438	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75280	+		10142	11389	5899	6019							0.026700540689603258
IGEQPAGEEN	10	Unmodified	_IGEQPAGEEN_					0	0	0			REV__nc|ENSG00000145335|P37840-3|SNCA	REV__nc|ENSG00000145335|P37840-3|SNCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2356354670501	2	522.235635	1042.45672	0.9963	0.0005203	8.273	0.0043205	9.2693	0.0048408	522.7411705980421	32.9	0.14481	32.9	32.852	32.997	0	1311	49	0.83019954	0.029530823	0.83019954	336.92258	0	11.984589						221	7	5	NaN	NaN	NaN	0.6772	1	10304	10304		9.6116	0.48844	1	19072	+		10143	9926	5900	6020	8003	8003					-0.06281208938025884
IGFAQPVRPHA	11	Unmodified	_IGFAQPVRPHA_					0	0	0			REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.22436843466676	3	398.224368	1191.65128	1.3596	0.00054143	8.4021	0.0033459	9.7617	0.0038873	398.2276346912789	25.105	0.12063	25.105	25.057	25.178	0	1431	46	0.75620437	0.027803838	0.75620437	459.58282	0	16.897766						179	6	4	NaN	NaN	NaN	0.77378	1	16206	16206		0.38034	0	1	33674	+		10144	12203	5901	6021	8004	8004					0.06311631728431166
IGFIDRSVT	9	Unmodified	_IGFIDRSVT_					0	0	0			REV__ENST00000607353.1_1_12:46931339-46965140:+|nuORF	REV__ENST00000607353.1_1_12:46931339-46965140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.5520216138001	1	1007.55202	1006.54475	1.4561	0.0014671	0.0049477	4.9851E-06	1.4611	0.0014721	1007.5518800408602	20.814	0.16874	20.814	20.742	20.911	0	225	100	1.4855686	0.058542967	1.4855686	301.59082	0	11.88504						244	8	2	NaN	NaN	NaN	0.27608	1	8849	8849		20.449	2.6497	1	24630	+		10145	12982	5902	6022	8005	8005					0.04173456443231771
IGGFDCLG	8	Unmodified	_IGGFDCLG_					0	0	0			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.3549017105001	1	781.354902	780.347625	1.9152	0.0014965	1.3556	0.0010592	3.2708	0.0025557	781.3555990763209	23.778	0.072308	23.778	23.73	23.803	0	570	46	1.2801172	0.026961088	1.2801172	260.89697	0	5.494873						70	4	2	NaN	NaN	NaN	0.82332	1	4492	4492		6.0903	0.62448	1	4884.5	+		10146	9946	5903	6023	8006	8006					-0.05133466371205486
IGGFFLAG	8	Unmodified	_IGGFFLAG_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.4243019047	1	781.424302	780.417025	1.2487	0.00097573	-1.6083	-0.0012568	-0.35964	-0.00028103	781.4225612341855	32.537	0.12067	32.534	32.486	32.607	-0.0031052	474	55	1.3375392	0.0322448	1.3360198	272.59958	0	6.5717163						122	6	2	NaN	NaN	NaN	0.83849	1	4416	4416		4.0537	0	1	9608.3			10147	1204	5904	6024	8007	8007					0.018033606398375923
IGGGPNVK	8	Unmodified	_IGGGPNVK_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4253645372002	1	741.425365	740.418088	2.0095	0.0014899	-2.9791	-0.0022088	-0.96954	-0.00071885	741.4234784797067	26.094	0.048296	26.094	26.07	26.119	0	582	37	1.2729256	0.021579266	1.2729256	259.67297	0	4.4020996						47	3	2	NaN	NaN	NaN	0.84207	1	3921	3921		3.5732	0.41988	1	4594.9	+		10148	8345	5905	6025	8008	8008					0.037495750087600754
IGGGPNVK	8	Unmodified						0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.425365	740.418088	2.0095	0.0014899	-2.9791	-0.0022088	-0.96954	-0.00071885	741.4234784797067	26.094	0.048296	26.094	26.07	26.119	0	582	37	1.2729256	0.021579266	1.2729256	259.67297		4.4020996	-0.0063947	-0.0012973	0.00075972	NaN	3.5732	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4594.9	+		10149	8345	5905	6025							0.037495750087600754
IGGGPNVK	8	Unmodified						0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.425365	740.418088	2.6545	0.0019681	0.6811	0.00050498	3.3356	0.0024731	741.4258539719661	26.118	0.072411	26.107	26.083	26.156	-0.011137	582	43	1.2729256	0.025173187	1.2714062	259.67294		5.135254	0.0063947	0.0014165	-0.00075972	NaN	3.5732	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4188.1	+		10150	8345	5905	6025							0.037495750087600754
IGGGPVLP	8	Unmodified	_IGGGPVLP_					0	0	0			REV__tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	REV__tr|U7STJ0|U7STJ0_FUSNUThreonine/SerineexporterThrEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01362PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.4243019047	1	709.424302	708.417025	0.89966	0.00063824	-4.2379	-0.0030065	-3.3383	-0.0023683	709.420882971988	26.94	0.12061	26.94	26.891	27.012	0	687	43	1.2098682	0.025267482	1.2098682	247.01204	0	5.158737						112	6	2	NaN	NaN	NaN	0.84876	1	3400	3400		0.39566	0	1	9624.7	+		10151	13496	5906	6026	8009	8009					0.051153606398429474
IGGLSAGL	8	Unmodified	_IGGLSAGL_					0	0	0			REV__nc|ENSG00000279688|A6NL99|AQP7P3	REV__nc|ENSG00000279688|A6NL99|AQP7P3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.4035664626	1	687.403566	686.39629	1.2726	0.00087481	0.15599	0.00010723	1.4286	0.00098204	687.4035895574516	21.055	0.24082	21.041	20.993	21.234	-0.014086	630	103	1.2441287	0.061291814	1.2426093	254.16129	0	12.52121						385	11	3	NaN	NaN	NaN	0.15767	1	2881	2881		53.324	0	1	82608	+		10152	11391	5907	6027	8010	8010					0.04054770260177065
IGGLSAGL	8	Unmodified						0	0	0			REV__nc|ENSG00000279688|A6NL99|AQP7P3	REV__nc|ENSG00000279688|A6NL99|AQP7P3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	687.403566	686.39629	1.8858	0.0012963	-0.62175	-0.00042739	1.264	0.00086888	687.4029943548599	21.031	0.24077	21.031	20.983	21.224	0	630	100	1.2441287	0.059485912	1.2441287	254.16129		12.152283	-0.0051301	-0.00022182	0.00075972	NaN	53.324	389	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86836	+		10153	11391	5907	6027							0.04054770260177065
IGGLSAGL	8	Unmodified						0	0	0			REV__nc|ENSG00000279688|A6NL99|AQP7P3	REV__nc|ENSG00000279688|A6NL99|AQP7P3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	687.403566	686.39629	1.2726	0.00087481	0.15599	0.00010723	1.4286	0.00098204	687.4035895574516	21.055	0.24082	21.041	20.993	21.234	-0.014086	630	103	1.2441287	0.061291814	1.2426093	254.16129		12.52121	0.0051301	0.0003128	-0.00075972	NaN	53.324	385	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82608	+		10154	11391	5907	6027							0.04054770260177065
IGGPDRVGQQ	10	Unmodified	_IGGPDRVGQQ_					0	0	0			REV__nc|ENSG00000184937|P19544-8|WT1	REV__nc|ENSG00000184937|P19544-8|WT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7699798109	2	513.76998	1025.52541	1.2766	0.00065589	-4.1802	-0.0021477	-2.9036	-0.0014918	513.7680354214654	20.935	0.1926	20.921	20.897	21.089	-0.014088	1275	112	0.85233563	0.068256795	0.8508162	345.98062	0	27.706818						507	9	5	NaN	NaN	NaN	0.62092	1	9411	9411		13.463	0.46021	1	330880	+		10155	10940	5908	6028	8011	8011					0.013665001523349929
IGGTIILK	8	Unmodified	_IGGTIILK_					0	0	0		tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	tr|U7SUG5|U7SUG5_FUSNU3-dehydroquinatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.77347124004996	2	407.773471	813.53239	1.5416	0.00062864	-2.1133	-0.00086173	-0.57163	-0.0002331	407.77251281805087	19.78	0.072062	19.78	19.756	19.828	0	1440	40	0.7506418	0.024107158	0.7506418	305.75018	0	9.819275						69	4	2	NaN	NaN	NaN	0.84512	1	4939	4939		2.4615	0	1	6654.2			10156	13886	5909	6029	8012	8012					0.11816464770834045
IGLLPGWT	8	Unmodified	_IGLLPGWT_					0	0	0		ENST00000606069.1_1_3:27754453-27754552:+|nuORF	ENST00000606069.1_1_3:27754453-27754552:+|nuORF	ENST00000606069.1_1_3:27754453-27754552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.74999614375	2	428.749996	855.485439	0.93532	0.00040102	-0.52945	-0.000227	0.40586	0.00017401	428.7497088460514	34.853	0.16875	34.853	34.78	34.949	-0.0006485	1275	61	0.85233563	0.036869586	0.8508162	346.8898	0	15.005463						231	8	3	NaN	NaN	NaN	0.62311	1	5337	5337		23.85	0	1	35219			10157	7780	5910	6030	8013	8013					0.051916052197157114
IGMEKFFNI	9	Unmodified	_IGMEKFFNI_					0	0	0		RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L	RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7862526518	2	549.786253	1097.55795	1.5864	0.00087216	-2.146	-0.0011799	-0.55965	-0.00030769	549.784896194865	28.001	0.12063	28.001	27.977	28.098	0	1245	85	0.87076044	0.051550567	0.87076044	353.15225	0	20.907227						224	6	3	NaN	NaN	NaN	0.032409	1	12750	12750		55.958	10.132	1	57285			10158	13663	5911	6031	8014	8014					0.01307571230972826
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(44)EKFFNI	0	0	1		RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L	RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.78370996285	2	557.78371	1113.55287	1.4063	0.00078441	-1.2715	-0.00070921	0.13482	7.5201E-05	557.7830559636857	24.671	0.193	24.671	24.598	24.791	0	1260	91	0.8615505	0.055232704	0.8615505	349.35477	0	22.396606						333	9	2	NaN	NaN	NaN	0.057383	1	13424	13424		43.776	8.4791	1	76040			10159	13663	5911	6032	8015	8015		658			0.0006326736834125768
IGMGEPDH	8	Unmodified	_IGMGEPDH_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.18690274795	2	428.186903	854.359253	0.84948	0.00036373	4.257	0.0018228	5.1065	0.0021865	428.1886289944685	34.95	0.16882	34.95	34.853	35.022	-4.5776E-05	1413	40	0.7673241	0.024086237	0.76580465	312.29767	0	9.803009						124	8	2	NaN	NaN	NaN	0.8439	1	5312	5312		3.1533	0	1	15929	+		10160	10598	5912	6033	8016	8016					-0.0737526934788093
IGMGEPDH	8	Unmodified						0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	428.186903	854.359253	0.91676	0.00039255	1.514	0.00064826	2.4307	0.0010408	428.18756496296623	34.879	0.096497	34.879	34.806	34.903	0	1404	52	0.77288127	0.031490564	0.77288127	314.55942		12.816498	-0.035366	-0.0011264	0.0035383	NaN	3.1533	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12010	+		10161	10598	5912	6033							-0.0737526934788093
IGMGEPDH	8	Unmodified						0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	428.186903	854.359253	0.84948	0.00036373	4.257	0.0018228	5.1065	0.0021865	428.1886289944685	34.95	0.16882	34.95	34.853	35.022	-4.5776E-05	1413	40	0.7673241	0.024086237	0.76580465	312.29767		9.803009	0.035366	0.0012227	-0.0035383	NaN	3.1533	124	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15929	+		10162	10598	5912	6033							-0.0737526934788093
IGPLDPLV	8	Unmodified	_IGPLDPLV_					0	0	0			REV__ENSG00000236980|ENST00000545770|C3orf84	REV__ENSG00000236980|ENST00000545770|C3orf84	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4923814699	1	823.492381	822.485105	2.0299	0.0016716	-0.10028	-8.2581E-05	1.9296	0.001589	823.4923188569207	29.86	0.14478	29.86	29.811	29.956	0	393	55	1.3858368	0.03215897	1.3858368	282.19318	0	6.548462						153	7	3	NaN	NaN	NaN	0.69631	1	5056	5056		19.285	1.5044	1	11693	+		10163	11328	5913	6034	8017	8017					0.06676185499850362
IGPLDPLV	8	Unmodified	_IGPLDPLV_					0	0	0			REV__ENSG00000236980|ENST00000545770|C3orf84	REV__ENSG00000236980|ENST00000545770|C3orf84	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4923814699	1	823.492381	822.485105	1.1896	0.00097964	0.6944	0.00057183	1.884	0.0015515	823.4927936078263	29.859	0.12064	29.852	29.803	29.924	-0.0070648	396	52	1.3840506	0.030370712	1.3825312	281.82944	0	6.1842957						132	6	2	NaN	NaN	NaN	0.35933	1	4940	4940		38.608	2.5716	1	12068	+		10164	11328	5913	6034	8018	8018					0.06676185499850362
IGPLDPLV	8	Unmodified						0	0	0			REV__ENSG00000236980|ENST00000545770|C3orf84	REV__ENSG00000236980|ENST00000545770|C3orf84	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	823.492381	822.485105	2.0299	0.0016716	-0.10028	-8.2581E-05	1.9296	0.001589	823.4923188569207	29.86	0.14478	29.86	29.811	29.956	0	393	55	1.3858368	0.03215897	1.3858368	282.19318		6.548462	0.0039877	-0.00030816	0.0016529	NaN	38.608	153	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11693	+		10165	11328	5913	6034							0.06676185499850362
IGPLDPLV	8	Unmodified						0	0	0			REV__ENSG00000236980|ENST00000545770|C3orf84	REV__ENSG00000236980|ENST00000545770|C3orf84	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	823.492381	822.485105	1.1896	0.00097964	0.6944	0.00057183	1.884	0.0015515	823.4927936078263	29.859	0.12064	29.852	29.803	29.924	-0.0070648	396	52	1.3840506	0.030370712	1.3825312	281.82944		6.1842957	-0.0039877	0.00034625	-0.0016529	NaN	38.608	132	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12068	+		10166	11328	5913	6034							0.06676185499850362
IGSVRVLA	8	Unmodified	_IGSVRVLA_					0	0	0			REV__ENST00000498554.5_1_19:2097388-2099029:+|nuORF	REV__ENST00000498554.5_1_19:2097388-2099029:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.76089518105005	2	407.760895	813.507237	1.3996	0.00057072	-0.92677	-0.0003779	0.47287	0.00019282	407.7598659197182	20.477	0.048094	20.463	20.439	20.487	-0.014141	1470	43	0.7320868	0.025991142	0.73056734	298.19254	0	10.58667						71	3	2	NaN	NaN	NaN	0.81251	1	4832	4832		7.5404	0.67717	1	6092.1	+		10167	12510	5914	6035	8019	8019					0.09302409968279335
IGTEPDTDVL	10	Unmodified	_IGTEPDTDVL_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6;ENST00000545710.1_1_12:9659830-9660388:-|nuORF	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.26386159025	2	530.263862	1058.51317	1.2412	0.00065816	-9.857	-0.0052268	-8.6158	-0.0045687	530.2589355164758	12.94	0.24022	12.94	12.892	13.132	0	1296	49	0.8394264	0.02951479	0.8394264	340.59985	0	11.975739						170	11	2	NaN	NaN	NaN	0.68669	1	11017	11017		8.962	1.3744	1	20257			10168	3064	5915	6036	8020	8020					-0.013745811013677667
IGTEPDTDVL	10	Unmodified						0	0	0		ENSG00000137040|ENST00000259569|RANBP6;ENST00000545710.1_1_12:9659830-9660388:-|nuORF	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.263862	1058.51317	0.91456	0.00048496	-7.0435	-0.0037349	-6.129	-0.00325	530.2615580657505	13.038	0.095821	13.028	13.028	13.124	-0.00947	1293	43	0.84127116	0.02582264	0.8397517	341.34836		10.477631	0.044117	0.0016629	0.00016267	NaN	8.962	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8133.6			10169	3064	5915	6036							-0.013745811013677667
IGTSVVII	8	Unmodified	_IGTSVVII_					0	0	0		nc|ENSG00000243772|P43628-2|KIR2DL3;ENSG00000243772|ENST00000342376|KIR2DL3;nc|ENSG00000242019|Q8N743|KIR3DL3;ENSG00000242019|ENST00000291860|KIR3DL3;ENST00000415311.1_1_19:55270285-55278820:+|nuORF;ENSG00000125498|ENST00000336077|KIR2DL1;nc|ENSG00000167633|P43629-2|KIR3DL1;nc|ENSG00000125498|P43626-2|KIR2DL1;ENSG00000167633|ENST00000391728|KIR3DL1	nc|ENSG00000243772|P43628-2|KIR2DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.5080315341003	1	801.508032	800.500755	1.6768	0.001344	-0.42097	-0.00033741	1.2559	0.0010066	801.507283347478	29.786	0.072365	29.779	29.755	29.828	-0.0070648	450	37	1.3518641	0.021478295	1.3503447	275.3996	0	4.3754883						71	4	2	NaN	NaN	NaN	0.27293	1	4664	4664		44.247	0	1	5194.6			10170	6075	5916	6037	8021	8021					0.09252472016919455
IGVGAVNG	8	Unmodified	_IGVGAVNG_					0	0	0			REV__ENST00000419190.1_1_1:201979340-201979472:-|nuORF	REV__ENST00000419190.1_1_1:201979340-201979472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.3831653715001	1	686.383165	685.375889	-0.3286	-0.00022554	2.7382	0.0018795	2.4096	0.0016539	686.3829488825279	57.523	0.096008	57.522	57.498	57.594	-0.00053787	519	139	1.310647	0.08265877	1.3091276	267.75803	0	16.88675						229	5	4	NaN	NaN	NaN	0.84692	1	2869	2869		1.4396	0	1	21346	+		10171	12100	5917	6038	8022	8022					0.020615996003812143
IHCFHISLY	9	Unmodified	_IHCFHISLY_					0	0	0			REV__ENST00000589189.5_1_18:33289772-33289811:+|nuORF	REV__ENST00000589189.5_1_18:33289772-33289811:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7840443138501	2	566.784044	1131.55354	0.98755	0.00055973	0.65281	0.00037001	1.6404	0.00092973	566.7861110994662	28.676	0.096542	28.668	28.644	28.74	-0.0083504	1224	82	0.883646	0.049658418	0.88212657	358.24466	0	20.132355						215	5	3	NaN	NaN	NaN	0.3389	1	13698	13698		16.417	1.2413	1	26445	+		10172	12905	5918	6039	8023	8023					-0.00697893191932053
IHCSQCENSGH	11	Unmodified	_IHCSQCENSGH_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.49408978170004	3	405.49409	1213.46044	1.0482	0.00042504	-10.319	-0.0041845	-9.2712	-0.0037594	405.48965118603854	12.054	0.28796	12.046	11.974	12.262	-0.0081863	1467	34	0.7339432	0.020420492	0.7324238	445.9621	0	12.4079895						153	13	2	NaN	NaN	NaN	0.688	1	16138	16138		3.5945	1.7443	1	21332			10173	2620	5919	6040	8024	8024					-0.13775185707481796
IHDEFILHCTL	11	Unmodified	_IHDEFILHCTL_					0	0	0			REV__ENST00000449115.1_1_20:33063817-33064123:-|nuORF	REV__ENST00000449115.1_1_20:33063817-33064123:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.8370051311001	2	670.837005	1339.65946	1.1903	0.0007985	3.4141	0.0022903	4.6044	0.0030888	670.8391941418184	27.133	0.048237	27.133	27.109	27.157	0	1095	49	0.9625867	0.029308379	0.9625867	389.5179	0	11.859863						95	3	3	NaN	NaN	NaN	0.76654	1	19405	19405		2.5994	0.49688	1	12696	+		10174	12225	5920	6041	8025	8025					0.00321397862876438
IHEPEPHI	8	Unmodified	_IHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.25089160075	2	486.250892	970.48723	1.9227	0.00093492	-0.7435	-0.00036153	1.1792	0.00057339	486.2503231610684	16.71	0.16799	16.71	16.638	16.806	0	1479	52	0.72651637	0.03157264	0.72651637	295.12936	0	12.825592						186	8	3	NaN	NaN	NaN	0.12876	1	7613	7613		58.599	19.991	1	19265			10175	167	5921	6042	8026	8026					0.0008061423766321241
IHEPEPHI	8	Unmodified	_IHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.25089160075	2	486.250892	970.48723	1.7766	0.00086389	-0.80657	-0.00039219	0.97007	0.0004717	486.2507866204523	16.802	0.16768	16.789	16.693	16.861	-0.013294	1476	55	0.72837335	0.03343165	0.7268539	295.88373	0	13.58078						190	8	3	NaN	NaN	NaN	0.39717	1	7472	7472		36.586	5.7954	1	20099			10176	167	5921	6042	8027	8027					0.0008061423766321241
IHFNLLETQL	10	Unmodified	_IHFNLLETQL_					0	0	0		nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.3402379243001	2	614.340238	1226.66592	0.26581	0.0001633	5.7665	0.0035426	6.0323	0.0037059	614.3440372235821	33.792	0.16899	33.79	33.694	33.863	-0.0018501	1128	49	0.9424274	0.029343128	0.94090796	381.71878	0	11.885101						158	8	3	NaN	NaN	NaN	0.63397	1	16467	16467		12.57	0.52101	1	14584			10177	8049	5922	6043	8028	8028					0.061656590859229254
IHGFIELELD	10	Unmodified	_IHGFIELELD_					0	0	0			REV__nc|ENSG00000138311|Q70YC5-3|ZNF365	REV__nc|ENSG00000138311|Q70YC5-3|ZNF365	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.31114613385	2	593.311146	1184.60774	1.3115	0.00077813	-7.2767	-0.0043173	-5.9652	-0.0035392	593.307353259699	17.306	0.26395	17.292	17.196	17.46	-0.013569	1140	55	0.93509084	0.033021748	0.9335714	378.89685	0	13.380341						245	12	3	NaN	NaN	NaN	0.53991	1	15393	15393		17.799	0.018654	1	23642	+		10178	13124	5923	6044	8029	8029					0.022819774406116267
IHGNLGKACI	10	Unmodified	_IHGNLGKACI_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2816688004001	2	513.281669	1024.54878	1.0877	0.00055831	8.4214	0.0043226	9.5091	0.0048809	513.2856614700449	35.167	0.096584	35.167	35.143	35.239	-4.5776E-05	1284	46	0.8468043	0.027656734	0.8452849	343.73962	0	11.226532						81	5	2	NaN	NaN	NaN	0.77513	1	9378	9378		1.7022	0.26263	1	5889.1			10179	4866	5924	6045	8030	8030					0.037492226653057514
IHGNLGKACI	10	Unmodified						0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.281669	1024.54878	1.0156	0.00052131	8.398	0.0043105	9.4136	0.0048318	513.2863850579421	35.168	0.072392	35.168	35.144	35.217	0	1284	43	0.8468043	0.025814295	0.8468043	343.73962		10.478668	0.0007591	-1.21E-05	0.00075972	NaN	1.7022	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4348.9			10180	4866	5924	6045							0.037492226653057514
IHGSLSIHYVH	11	Unmodified	_IHGSLSIHYVH_					0	0	0			REV__ENST00000517490.5_1_8:87572038-87572317:+|nuORF	REV__ENST00000517490.5_1_8:87572038-87572317:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.8356540729001	2	631.835654	1261.65676	2.1169	0.0013375	1.6202	0.0010237	3.7371	0.0023612	631.8360481561938	22.235	0.072395	22.222	22.197	22.27	-0.013731	1125	22	0.9442611	0.012834191	0.94274163	382.34344	0	5.196747						42	4	2	NaN	NaN	NaN	0.77166	1	17254	17254		1.7022	0.19679	1	2514.7	+		10181	12576	5925	6046	8031	8031					0.03639310520225081
IHLIPYII	8	Unmodified	_IHLIPYII_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.3102208871	2	491.310221	980.605889	-0.86822	-0.00042657	-0.96712	-0.00047516	-1.8353	-0.00090172	491.3096117539248	56.083	0.072025	56.082	56.034	56.106	-0.00056458	1152	43	0.92775106	0.025694609	0.9262317	376.8217	0	10.43634						108	4	4	NaN	NaN	NaN	0.84876	1	7740	7740		0.39566	0	1	27222			10182	2533	5926	6047	8032	8032					0.11481013213312963
IHPSAPKN	8	Unmodified	_IHPSAPKN_					0	0	0			REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant	REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.24032691445	2	432.240327	862.466101	1.3655	0.00059023	2.3995	0.0010372	3.765	0.0016274	432.24130576608064	25.008	0.16888	24.996	24.948	25.117	-0.012011	1389	34	0.7821392	0.020362973	0.78061974	318.28006	0	8.286407						85	8	2	NaN	NaN	NaN	0.78264	1	5425	5425		11.548	0	1	7322.2	+		10183	8114	5927	6048	8033	8033					0.02936648928800878
IHPTLSKK	8	Unmodified	_IHPTLSKK_					0	0	0			REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5672777475002	1	923.567278	922.560001	-0.67612	-0.00062445	0.27215	0.00025135	-0.40397	-0.00037309	923.5677084279434	49.838	0.21563	49.84	49.744	49.96	0.0017853	345	46	1.4143922	0.026746511	1.4128729	287.49402	0	5.436554						209	10	3	NaN	NaN	NaN	0.80071	1	6334	6334		9.1232	0.83292	1	17525	+		10184	9336	5928	6049	8034	8034					0.09562368031095048
IHPTLSKK	8	Unmodified						0	0	0			REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.567278	922.560001	1.828	0.0016882	-1.6291	-0.0015046	0.19884	0.00018365	923.5655939521843	49.816	0.19173	49.816	49.768	49.96	0	345	49	1.4143922	0.028531194	1.4143922	287.49402		5.799347	-0.012178	-0.00073258	0.00075972	NaN	9.1232	145	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14440	+		10185	9336	5928	6049							0.09562368031095048
IHPTLSKK	8	Unmodified						0	0	0			REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	REV__ENST00000492193.1_1_2:136111018-136262059:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	923.567278	922.560001	-0.67612	-0.00062445	0.27215	0.00025135	-0.40397	-0.00037309	923.5677084279434	49.838	0.21563	49.84	49.744	49.96	0.0017853	345	46	1.4143922	0.026746511	1.4128729	287.49402		5.436554	0.012178	0.0010234	-0.00075972	NaN	9.1232	209	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17525	+		10186	9336	5928	6049							0.09562368031095048
IHQHQLMTL	9	Unmodified	_IHQHQLMTL_					0	0	0			REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF	REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8002256943001	2	560.800226	1119.5859	1.148	0.0006438	4.8006	0.0026922	5.9486	0.003336	560.8034488267015	31.742	0.1448	31.742	31.67	31.815	0	1245	106	0.87076044	0.064413846	0.87076044	353.06604	0	26.117767						357	7	3	NaN	NaN	NaN	0.25448	1	13657	13657		21.835	1.3217	1	61028	+		10187	11174	5929	6050	8035	8035					0.03088894211077786
IHRYMYPEMKI	11	2 Oxidation (M)	_IHRYM(Oxidation (M))YPEM(Oxidation (M))KI_		IHRYM(1)YPEM(1)KI		IHRYM(40)YPEM(40)KI	0	0	2		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.8705219849501	2	756.870522	1511.72649	0.87155	0.00065965	-0.20671	-0.00015645	0.66484	0.0005032	756.8707101132646	31.211	0.14479	31.211	31.187	31.332	0	1023	73	1.0064877	0.043825448	1.0064877	406.8091	0	17.713654						294	7	4	NaN	NaN	NaN	0.095947	1	20624	20624		40.006	16.888	1	41736			10188	6127	5930	6051	8036	8036		621;622			-0.008903149176830993
IHSGIGRA	8	Unmodified	_IHSGIGRA_					0	0	0			REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.73266905785005	2	405.732669	809.450785	1.312	0.00053232	-1.8616	-0.0007553	-0.54959	-0.00022299	405.73206580670103	11.98	0.26404	11.98	11.908	12.172	0	1557	46	0.67816323	0.027933955	0.67816323	276.2514	0	11.378967						168	12	2	NaN	NaN	NaN	0.54545	1	4882	4882		28.667	3.7055	1	22252	+		10189	11556	5931	6052	8037	8037					0.038437821316165355
IHSGIGRA	8	Unmodified						0	0	0			REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.732669	809.450785	1.312	0.00053232	-1.8616	-0.0007553	-0.54959	-0.00022299	405.73206580670103	11.98	0.26404	11.98	11.908	12.172	0	1557	46	0.67816323	0.027933955	0.67816323	276.2514		11.378967	-0.0088749	-0.00024165	0.00075972	NaN	28.667	168	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22252	+		10190	11556	5931	6052							0.038437821316165355
IHSGIGRA	8	Unmodified						0	0	0			REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	REV__ENST00000263056.5_1_10:30723133-30726176:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.732669	809.450785	1.0599	0.00043005	-1.3429	-0.00054488	-0.28302	-0.00011483	405.7321173399228	12.006	0.19189	11.998	11.926	12.118	-0.0081863	1557	46	0.67816323	0.027936995	0.6766438	276.2514		11.3802185	0.0088749	0.00017921	-0.00075972	NaN	28.667	181	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22111	+		10191	11556	5931	6052							0.038437821316165355
IHSTTPLS	8	Unmodified	_IHSTTPLS_					0	0	0		RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant	RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.4570585961002	1	855.457059	854.449782	2.2313	0.0019088	5.8492	0.0050037	8.0806	0.0069126	855.4619638840744	24.261	0.14475	24.261	24.237	24.381	0	360	331	1.405474	0.19701123	1.405474	286.0158	0	40.092056						940	7	5	NaN	NaN	NaN	0.19946	1	5461	5461		50.033	5.7857	1	1194600			10192	2443	5932	6053	8038	8038					0.016735229720552525
IHSTTPLS	8	Unmodified						0	0	0		RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant;nc|ENSG00000124813|Q13950-3|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;ENSG00000124813|ENST00000647337|RUNX2	RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant	RUNX2|p.R325Q|1|0.17|ENSG00000124813|chr6:45512360-45512360|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	855.457059	854.449782	2.0518	0.0017553	6.2431	0.0053407	8.295	0.007096	855.4622688888485	24.26	0.16895	24.248	24.224	24.393	-0.012749	357	355	1.407258	0.21142972	1.4057386	286.37888		43.026245	-0.0065195	0.00014068	0.0001323	NaN	50.033	886	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003300			10193	2443	5932	6053							0.016735229720552525
IHTEKHYLSF	10	Unmodified	_IHTEKHYLSF_					0	0	0		HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant;nc|ENSG00000103044|O00219-2|HAS3;ENSG00000103044|ENST00000569188|HAS3	HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant	HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.83003737875	2	637.830037	1273.64552	1.6679	0.0010639	-4.9756	-0.0031736	-3.3077	-0.0021097	637.8257806051276	24.623	0.14471	24.61	24.586	24.731	-0.012394	1149	58	0.92958635	0.034854412	0.9280669	376.36313	0	14.111542						122	7	3	NaN	NaN	NaN	0.70538	1	17489	17489		7.6826	0	1	9469.7			10194	1410	5933	6054	8039	8039					0.0196448842607424
IHTEKHYLSF	10	Unmodified						0	0	0		HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant;nc|ENSG00000103044|O00219-2|HAS3;ENSG00000103044|ENST00000569188|HAS3	HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant	HAS3|p.T163Dfs*55|1|0.09|ENSG00000103044|chr16:69109879-69109880|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.830037	1273.64552	1.4745	0.00094049	-5.6219	-0.0035858	-4.1474	-0.0026453	637.8254207822858	24.598	0.072388	24.598	24.574	24.647	0	1149	76	0.92958635	0.045846224	0.92958635	376.36313		18.561829	-0.0058203	-0.00037944	0.00075972	NaN	7.6826	103	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8439.3			10195	1410	5933	6054							0.0196448842607424
IHVAIPDI	8	Unmodified	_IHVAIPDI_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.26072800555	2	439.260728	876.506903	1.6179	0.00071066	2.3067	0.0010133	3.9246	0.0017239	439.2620156253944	26.215	0.072378	26.215	26.191	26.263	0	1341	31	0.8117308	0.018478692	0.8117308	330.23904	0	7.517761						73	4	3	NaN	NaN	NaN	0.84207	1	5761	5761		3.5732	0.41988	1	6435.6			10196	828	5934	6055	8040	8040					0.06370990248422004
IIANGMLT	8	Unmodified	_IIANGMLT_					0	0	0			REV__OR10A3|p.V36M|1|0.29|ENSG00000170683|chr11:7939415-7939415|C/T|missense_variant	REV__OR10A3|p.V36M|1|0.29|ENSG00000170683|chr11:7939415-7939415|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4597011330001	1	832.459701	831.452425	2.0777	0.0017296	-3.8785	-0.0032287	-1.8008	-0.0014991	832.4568475465659	23.393	0.04825	23.393	23.393	23.441	0	405	49	1.3786905	0.028591871	1.3786905	280.68823	0	5.8210144						66	3	2	NaN	NaN	NaN	0.75561	1	5156	5156		15.175	2.5875	1	7502.1	+		10197	10595	5935	6056	8041	8041					0.0299565510534876
IIANGMLT	8	Unmodified						0	0	0			REV__OR10A3|p.V36M|1|0.29|ENSG00000170683|chr11:7939415-7939415|C/T|missense_variant	REV__OR10A3|p.V36M|1|0.29|ENSG00000170683|chr11:7939415-7939415|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.459701	831.452425	2.0777	0.0017296	-3.8785	-0.0032287	-1.8008	-0.0014991	832.4568475465659	23.393	0.04825	23.393	23.393	23.441	0	405	49	1.3786905	0.028591871	1.3786905	280.68823		5.8210144	-0.017253	-0.00082348	-0.00013373	NaN	15.175	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7502.1	+		10198	10595	5935	6056							0.0299565510534876
IIDGAPCARGS	11	Unmodified	_IIDGAPCARGS_					0	0	0		ENSG00000169035|ENST00000595820|KLK7	ENSG00000169035|ENST00000595820|KLK7	ENSG00000169035|ENST00000595820|KLK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.26621570145	2	530.266216	1058.51788	1.7409	0.00092312	-9.2041	-0.0048806	-7.4633	-0.0039575	530.2618829606556	28.701	0.12067	28.701	28.629	28.75	0	1236	124	0.876284	0.075586855	0.876284	355.55493	0	30.669586						452	6	3	NaN	NaN	NaN	0.63477	1	11019	11019		11.739	0.19041	1	62410			10199	4652	5936	6057	8042	8042					-0.009039754396098942
IIDKSDVF	8	Unmodified	_IIDKSDVF_					0	0	0		SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5036744377	1	936.503674	935.496398	1.1125	0.0010419	-0.66751	-0.00062513	0.44501	0.00041676	936.5033262918918	32.9	0.096561	32.9	32.852	32.949	0	297	49	1.4428991	0.028485656	1.4428991	293.22876	0	5.78891						98	5	3	NaN	NaN	NaN	0.81251	1	6738	6738		7.5404	2.6306	1	6649.4			10200	670	5937	6058	8043	8043					0.02606962803326951
IIENEDYQQ	9	Unmodified	_IIENEDYQQ_					0	0	0		CON__P21578	CON__P21578	CON__P21578	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2643929065	2	576.264393	1150.51423	0.85349	0.00049184	-10.725	-0.0061803	-9.8713	-0.0056885	576.2583548876358	35.818	0.19272	35.819	35.746	35.939	0.00052643	1215	61	0.8891654	0.036782026	0.88764596	360.41083	0	14.909088						251	9	3	NaN	NaN	NaN	0.35794	1	14313	14313		15.463	1.4211	1	34993		+	10201	198	5938	6059	8044	8044					-0.05500366732485418
IIENEDYQQ	9	Unmodified						0	0	0		CON__P21578	CON__P21578	CON__P21578	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.264393	1150.51423	1.2927	0.00074493	-11.64	-0.0067077	-10.347	-0.0059628	576.2576358251816	35.82	0.21684	35.82	35.771	35.988	0	1218	55	0.8873258	0.0331074	0.8873258	359.6652		13.419647	0.00050888	-0.0004663	-0.00016008	NaN	15.463	272	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35442		+	10202	198	5938	6059							-0.05500366732485418
IIGGFLCA	8	Unmodified	_IIGGFLCA_					0	0	0			REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.4276727231	1	793.427673	792.420396	1.4304	0.0011349	-4.7607	-0.0037773	-3.3303	-0.0026424	793.4240292054409	30.969	0.096546	30.964	30.94	31.036	-0.0050716	531	55	1.3034686	0.03231013	1.3019491	265.58618	0	6.583313						121	5	2	NaN	NaN	NaN	0.60626	1	4572	4572		24.901	6.8666	1	13183	+		10203	9387	5939	6060	8045	8045					0.015882874222029386
IIGGFLCA	8	Unmodified						0	0	0			REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	REV__ENST00000569732.1_1_16:58585686-58592512:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	793.427673	792.420396	1.4304	0.0011349	-4.7607	-0.0037773	-3.3303	-0.0026424	793.4240292054409	30.969	0.096546	30.964	30.94	31.036	-0.0050716	531	55	1.3034686	0.03231013	1.3019491	265.58618		6.583313	-0.0030475	-0.00016182	0.00013783	NaN	24.901	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13183	+		10204	9387	5939	6060							0.015882874222029386
IIHLHFLKQV	10	Unmodified	_IIHLHFLKQV_					0	0	0		nc|ENSG00000148634|Q5GLZ8-5|HERC4	nc|ENSG00000148634|Q5GLZ8-5|HERC4	nc|ENSG00000148634|Q5GLZ8-5|HERC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1247.7622891607998	1	1247.76229	1246.75501	1.9934	0.0024872	-10.725	-0.013382	-8.7318	-0.010895	1247.7497959879001	35.048	0.096508	35.048	34.999	35.096	0	75	85	1.5741152	0.049470544	1.5741152	318.73383	0	10.017029						385	5	5	NaN	NaN	NaN	0.78133	1	17698	17698		0.19249	0.031377	1	86568			10205	7956	5940	6061	8046	8046					0.14150538836065607
IIIDLVHKF	9	Unmodified	_IIIDLVHKF_					0	0	0		FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3395096428001	2	549.33951	1096.66447	1.263	0.00069384	-4.899	-0.0026912	-3.6359	-0.0019974	549.3372537339632	26.601	0.21719	26.59	26.542	26.759	-0.010645	1197	88	0.9001988	0.053348422	0.8986794	365.09518	0	21.636597						326	10	4	NaN	NaN	NaN	0.060816	1	12382	12382		42.318	0.53309	1	77605			10206	5562	5941	6062	8047	8047					0.1200006978779129
IILDTVDLFEL	11	Unmodified	_IILDTVDLFEL_					0	0	0		tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1	tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1	tr|U7SPQ7|U7SPQ7_FUSNUDNAmismatchrepairproteinsmutSfamilydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01865PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.91123315159996	3	430.911233	1289.71187	1.6369	0.00070535	-5.3163	-0.0022908	-3.6794	-0.0015855	431.2433312590687	20.044	0.096294	20.03	19.982	20.078	-0.014141	1470	31	0.7320868	0.018567085	0.73056734	444.53867	0	11.2743225						60	5	2	NaN	NaN	NaN	0.69801	1	17770	17770		7.8039	5.2434	1	4407.6			10207	13801	5942	6063	8048	8048					0.07860259477456566
IILTRYWQNVR	11	Unmodified	_IILTRYWQNVR_					0	0	0			REV__ENST00000440859.7_1_7:107399090-107399198:+|nuORF	REV__ENST00000440859.7_1_7:107399090-107399198:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.4198852288	2	731.419885	1460.82522	1.54	0.0011264	-4.148	-0.0030339	-2.608	-0.0019075	731.9197945775376	54.5	0.072205	54.5	54.476	54.548	0	1005	34	1.0174452	0.020081162	1.0174452	411.36798	0	8.119141						83	4	4	NaN	NaN	NaN	0.77278	1	20440	20440		1.5054	0.32859	1	5806.3	+		10208	12190	5943	6064	8049	8049					0.11323792433881863
IILTSAAT	8	Unmodified	_IILTSAAT_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4716460277999	1	789.471646	788.46437	0.27908	0.00022033	-5.6732	-0.0044788	-5.3941	-0.0042585	789.4672754969489	53.898	0.071983	53.897	53.897	53.969	-0.00059128	402	40	1.3804773	0.023229599	1.3789579	281.30106	0	4.7335205						56	4	2	NaN	NaN	NaN	0.84876	1	4522	4522		0.39566	0	1	4425.9	+		10209	13509	5944	6065	8050	8050					0.061675951201777934
IILTSAAT	8	Unmodified						0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.471646	788.46437	2.0098	0.0015867	-5.1025	-0.0040283	-3.0927	-0.0024416	789.467042139262	53.9	0.024033	53.9	53.9	53.924	0	402	40	1.3804773	0.023227215	1.3804773	281.30106		4.733032	0.0011747	0.00017015	0.00075972	NaN	0.39566	42	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3964	+		10210	13509	5944	6065							0.061675951201777934
IILTSAAT	8	Unmodified						0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.471646	788.46437	0.27908	0.00022033	-5.6732	-0.0044788	-5.3941	-0.0042585	789.4672754969489	53.898	0.071983	53.897	53.897	53.969	-0.00059128	402	40	1.3804773	0.023229599	1.3789579	281.30106		4.7335205	-0.0011747	-0.0002804	-0.00075972	NaN	0.39566	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4425.9	+		10211	13509	5944	6065							0.061675951201777934
IILVGNKK	8	Unmodified	_IILVGNKK_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENST00000473074.1_1_1:113244164-113245337:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.5927642165002	1	884.592764	883.585488	1.9357	0.0017123	1.3283	0.001175	3.264	0.0028873	884.5948368002106	58.173	0.047974	58.173	58.149	58.197	0	294	46	1.4446791	0.026700974	1.4446791	293.8406	0	5.4308777						65	3	2	NaN	NaN	NaN	0.84887	1	5852	5852		0.32989	0	1	5814.5			10212	720	5945	6066	8051	8051					0.13903842553520462
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3098949236	2	557.309895	1112.60524	2.0714	0.0011544	-4.081	-0.0022744	-2.0096	-0.00112	557.3094290669806	25.925	0.19309	25.914	25.841	26.034	-0.0116	1200	70	0.89836043	0.042292476	0.896841	364.2848	0	17.149597						233	9	3	NaN	NaN	NaN	0.10956	1	13009	13009		34.439	12.312	1	26558			10213	451	5946	6067	8052	8052					0.053438505019585136
IIMPHNIYL	9	Unmodified						0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.309895	1112.60524	1.8512	0.0010317	-5.2277	-0.0029135	-3.3765	-0.0018818	557.3060147167645	25.732	0.12063	25.732	25.66	25.781	0	1191	73	0.90387505	0.04410982	0.90387505	366.52097		17.886536	-0.090604	-0.00080166	0.003517	NaN	34.439	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21422			10214	451	5946	6067							0.053438505019585136
IIMRHEEIK	9	Unmodified	_IIMRHEEIK_					0	0	0		TENM4|p.E1005_N1006insIKAWW|1|0.13|ENSG00000149256|chr11:78732439-78732440|-/CACCATGCTTTTATT|inframe_insertion	TENM4|p.E1005_N1006insIKAWW|1|0.13|ENSG00000149256|chr11:78732439-78732440|-/CACCATGCTTTTATT|inframe_insertion	TENM4|p.E1005_N1006insIKAWW|1|0.13|ENSG00000149256|chr11:78732439-78732440|-/CACCATGCTTTTATT|inframe_insertion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8289831337501	2	584.828983	1167.64341	1.7482	0.0010224	-8.1717	-0.0047791	-6.4236	-0.0037567	584.8245425952741	12.918	0.071884	12.909	12.909	12.98	-0.00947	1200	37	0.89836043	0.022062063	0.896841	364.07462	0	8.9410095						49	4	2	NaN	NaN	NaN	0.68136	1	14876	14876		0.79988	0.20265	1	3818.9			10215	13714	5947	6068	8053	8053					0.06629736416630294
IINDMDTQYDG	11	Unmodified	_IINDMDTQYDG_					0	0	0		tr|U7SRN0|U7SRN0_FUSNUNAD-dependentproteindeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobBPE=3SV=1	tr|U7SRN0|U7SRN0_FUSNUNAD-dependentproteindeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobBPE=3SV=1	tr|U7SRN0|U7SRN0_FUSNUNAD-dependentproteindeacetylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.8519371479	3	428.851937	1283.53398	1.0725	0.00045992	-2.3589	-0.0010116	-1.2864	-0.00055169	429.1849436858853	30.39	0.072395	30.383	30.359	30.431	-0.0064106	1443	40	0.7487872	0.024114966	0.7472678	454.70264	0	14.64389						82	4	3	NaN	NaN	NaN	0.6875	1	17664	17664		5.9336	0.91671	1	4924.9			10216	13818	5948	6069	8054	8054					-0.09644358783998541
IINNAEELI	9	Unmodified	_IINNAEELI_					0	0	0			REV__tr|U7SVD5|U7SVD5_FUSNUSeleniummetabolismproteinYedFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01222PE=4SV=1	REV__tr|U7SVD5|U7SVD5_FUSNUSeleniummetabolismproteinYedFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01222PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7847642078501	2	514.784764	1027.55498	2.2786	0.001173	1.3562	0.00069818	3.6348	0.0018712	515.2871074102457	23.224	0.12051	23.224	23.152	23.272	0	1284	88	0.8468043	0.053463817	0.8468043	343.72632	0	21.701508						188	6	3	NaN	NaN	NaN	0.33629	1	9684	9684		16.584	2.5426	1	13077	+		10217	13535	5949	6070	8055	8055					0.04230019377814642
IIPAFVPLLF	10	Unmodified	_IIPAFVPLLF_					0	0	0		tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.35462839075	2	565.354628	1128.6947	1.183	0.00066884	-4.6336	-0.0026196	-3.4506	-0.0019508	565.3518351364613	22.428	0.096239	22.414	22.39	22.486	-0.013731	1188	55	0.90571284	0.03306806	0.9041934	367.20215	0	13.406769						120	5	3	NaN	NaN	NaN	0.62092	1	13604	13604		12.588	4.3103	1	13634			10218	14003	5950	6071	8056	8056					0.13550428452981578
IIPAFVPLLF	10	Unmodified						0	0	0		tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.354628	1128.6947	1.91	0.0010798	-5.5882	-0.0031593	-3.6781	-0.0020795	565.3520249269764	22.356	0.07234	22.356	22.332	22.405	0	1191	43	0.90387505	0.02573073	0.90387505	366.45703		10.431976	-0.028954	-0.00053639	-0.00015919	NaN	12.588	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12666			10219	14003	5950	6071							0.13550428452981578
IIQSREPSL	9	Unmodified	_IIQSREPSL_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT;ENSG00000169925|ENST00000303407|BRD3	ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3	ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7982059341001	2	521.798206	1041.58186	1.7581	0.00091739	-1.1272	-0.00058815	0.63096	0.00032924	521.7974587866561	17.069	0.19209	17.069	16.997	17.189	0	1251	73	0.8670771	0.04422921	0.8670771	351.8926	0	17.94986						230	9	3	NaN	NaN	NaN	0.052553	1	10293	10293		45.827	0.66164	1	31586			10220	3345;4703	5951	6072	8057	8057					0.06273127989015848
IIQSREPSL	9	Unmodified	_IIQSREPSL_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;BRDT|p.S545R|1|0.71|ENSG00000137948|chr1:91981063-91981063|C/A|missense_variant;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT;ENSG00000169925|ENST00000303407|BRD3	ENSG00000141867|ENST00000679869|BRD4;ENSG00000169925|ENST00000303407|BRD3	ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7982059341001	2	521.798206	1041.58186	1.6951	0.00088451	-1.0497	-0.00054774	0.6454	0.00033677	521.79759757778	17.09	0.16806	17.077	17.005	17.173	-0.013294	1251	88	0.8670771	0.053452313	0.8655577	351.8926	0	21.692963						249	8	3	NaN	NaN	NaN	0.057383	1	10086	10086		43.776	6.4732	1	32722			10221	3345;4703	5951	6072	8058	8058					0.06273127989015848
IIVNELFQF	9	Unmodified	_IIVNELFQF_					0	0	0			REV__XKR3|p.M358I|1|0.2|ENSG00000172967|chr22:16783925-16783925|C/G|missense_variant	REV__XKR3|p.M358I|1|0.2|ENSG00000172967|chr22:16783925-16783925|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.81332468205	2	561.813325	1121.6121	0.94189	0.00052917	-0.81881	-0.00046002	0.12308	6.9148E-05	561.811817830138	35.215	0.14484	35.215	35.167	35.312	-4.5776E-05	1230	46	0.8799654	0.027605891	0.878446	356.79056	0	11.193085						137	7	3	NaN	NaN	NaN	0.25448	1	13350	13350		21.835	0.063931	1	15738	+		10222	13648	5952	6073	8059	8059					0.05615486654187407
IIWMAYIL	8	Unmodified	_IIWMAYIL_					0	0	0			REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.79080671344997	2	511.790807	1021.56706	0.86719	0.00044382	-8.3792	-0.0042884	-7.5121	-0.0038446	511.78642276890224	20.67	0.1206	20.656	20.608	20.728	-0.014086	1446	46	0.7469324	0.027821898	0.74541295	303.21085	0	11.294098						165	6	3	NaN	NaN	NaN	0.81214	1	9248	9248		7.5902	1.34	1	20313	+		10223	11820	5953	6074	8060	8060					0.05713964587289411
IIYTKVLV	8	Unmodified	_IIYTKVLV_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.6128309566002	1	948.612831	947.605554	2.0437	0.0019387	-0.76606	-0.00072669	1.2777	0.001212	948.612039361827	52.14	0.21556	52.14	52.044	52.26	0	258	223	1.4660252	0.13157868	1.4660252	297.87326	0	26.73471						753	10	4	NaN	NaN	NaN	0.62311	1	7039	7039		23.85	0	1	142800	+		10224	10998	5954	6075	8061	8061					0.1296559349348172
IIYTKVLV	8	Unmodified	_IIYTKVLV_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.6128309566002	1	948.612831	947.605554	-0.11134	-0.00010562	0.86394	0.00081954	0.7526	0.00071393	948.6139826433326	52.162	0.19163	52.162	52.066	52.258	-0.00031662	258	214	1.4660252	0.12623775	1.4645058	297.87326	0	25.649506						816	9	4	NaN	NaN	NaN	0.62311	1	6908	6908		23.85	0	1	161280	+		10225	10998	5954	6075	8062	8062					0.1296559349348172
IIYTKVLV	8	Unmodified						0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.612831	947.605554	2.0437	0.0019387	-0.76606	-0.00072669	1.2777	0.001212	948.612039361827	52.14	0.21556	52.14	52.044	52.26	0	258	223	1.4660252	0.13157868	1.4660252	297.87326		26.73471	-0.011033	-0.00093072	0.00075972	NaN	23.85	753	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142800	+		10226	10998	5954	6075							0.1296559349348172
IIYTKVLV	8	Unmodified						0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.612831	947.605554	-0.11134	-0.00010562	0.86394	0.00081954	0.7526	0.00071393	948.6139826433326	52.162	0.19163	52.162	52.066	52.258	-0.00031662	258	214	1.4660252	0.12623775	1.4645058	297.87326		25.649506	0.011033	0.00061552	-0.00075972	NaN	23.85	816	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161280	+		10227	10998	5954	6075							0.1296559349348172
IKAKRGKVL	9	Unmodified	_IKAKRGKVL_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.6989606225003	1	1012.69896	1011.69168	2.0679	0.0020942	1.9485	0.0019732	4.0164	0.0040674	1012.7013002344528	57.957	0.024025	57.957	57.933	57.957	0	102	40	1.5582114	0.022979379	1.5582114	316.31656	0	4.6648254						47	2	2	NaN	NaN	NaN	0.68801	1	9066	9066		0.23014	0	1	3769.5	+		10228	8668	5955	6076	8063	8063					0.18630598118852504
IKAKRGKVL	9	Unmodified						0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1012.69896	1011.69168	2.0679	0.0020942	1.9485	0.0019732	4.0164	0.0040674	1012.7013002344528	57.957	0.024025	57.957	57.933	57.957	0	102	40	1.5582114	0.022979379	1.5582114	316.31656		4.6648254	0.001386	0.0010893	-0.001008	NaN	0.23014	47	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3769.5	+		10229	8668	5955	6076							0.18630598118852504
IKAKRGKVL	9	Unmodified						0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.69896	1011.69168	0.27373	0.0002772	0.27073	0.00027417	0.54446	0.00055138	1012.7003766991724	57.955	0.024124	57.954	57.93	57.954	-0.00050735	96	49	1.5617468	0.028277874	1.5602274	317.03427		5.7404175	-0.001386	-0.00060972	0.001008	NaN	0.23014	54	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5060.4	+		10230	8668	5955	6076							0.18630598118852504
IKCFFNIKFGL	11	Unmodified	_IKCFFNIKFGL_					0	0	0			REV__DIAPH2|p.L861F|1|0.41|ENSG00000147202|chrX:97114957-97114957|C/T|missense_variant	REV__DIAPH2|p.L861F|1|0.41|ENSG00000147202|chrX:97114957-97114957|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.91777648663333	3	443.917776	1328.7315	1.1981	0.00053185	4.8503	0.0021531	6.0484	0.002685	444.2548655715542	23.706	0.19269	23.706	23.658	23.851	0	1377	34	0.7895419	0.020351946	0.7895419	479.27756	0	12.354309						150	9	3	NaN	NaN	NaN	0.688	1	19243	19243		8.3538	4.4451	1	12898	+		10231	8311	5956	6077	8064	8064					0.08028357007242448
IKDNTLALE	9	Unmodified	_IKDNTLALE_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.78476420785	2	508.784764	1015.55498	1.307	0.00066498	-8.8156	-0.0044852	-7.5086	-0.0038202	508.78072077984643	12.7	0.26417	12.7	12.58	12.844	0	1284	52	0.8468043	0.031347692	0.8468043	343.78006	0	12.726288						331	12	4	NaN	NaN	NaN	0.14787	1	9209	9209		28.896	2.7806	1	67611			10232	879	5957	6078	8065	8065					0.047820193778079556
IKETAFVTSE	10	Unmodified	_IKETAFVTSE_					0	0	0		PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000492632.5_1_20:9288449-9449247:+|nuORF;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.53264475163326	3	375.532645	1123.5761	1.5984	0.00060027	1.3137	0.00049332	2.9121	0.0010936	375.5327901424342	15.63	0.096083	15.63	15.606	15.702	0	1503	49	0.711653	0.029729903	0.711653	432.8061	0	18.080872						104	5	3	NaN	NaN	NaN	0.6772	1	13831	13831		7.8039	3.555	1	7664.9			10233	1315	5958	6079	8066	8066					0.019259846866589214
IKGTSQLFF	9	Unmodified	_IKGTSQLFF_					0	0	0			REV__ENST00000520093.5_1_8:86250427-86253864:-|nuORF	REV__ENST00000520093.5_1_8:86250427-86253864:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.7923922747001	2	520.792392	1039.57023	1.9503	0.0010157	-7.112	-0.0037039	-5.1617	-0.0026882	520.7890271986987	38.513	0.096245	38.517	38.493	38.59	0.0040245	1251	28	0.8670771	0.0165779	0.8655577	351.90152	0	6.7280884						52	5	2	NaN	NaN	NaN	0.51576	1	9988	9988		8.962	1.4216	1	4005.8	+		10234	12592	5959	6080	8067	8067					0.05202930965674568
IKLFEGDKKAT	11	Unmodified	_IKLFEGDKKAT_					0	0	0		tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.3611703316501	2	625.36117	1248.70779	1.1331	0.00070862	7.047	0.0044069	8.1801	0.0051155	625.3663214373264	35.048	0.14479	35.048	34.999	35.144	0	1191	67	0.90387505	0.040442765	0.90387505	366.03168	0	16.377655						462	7	5	NaN	NaN	NaN	0.74155	1	17753	17753		4.7291	0	1	196110			10235	13751	5960	6081	8068	8068					0.09338214774425069
IKLFKLSFW	9	Unmodified	_IKLFKLSFW_					0	0	0		OR8K1|p.C175W|1|0.3|ENSG00000150261|chr11:56346563-56346563|T/G|missense_variant	OR8K1|p.C175W|1|0.3|ENSG00000150261|chr11:56346563-56346563|T/G|missense_variant	OR8K1|p.C175W|1|0.3|ENSG00000150261|chr11:56346563-56346563|T/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.5742270861666	3	394.574227	1180.70085	1.3538	0.00053418	1.0685	0.00042161	2.4223	0.00095578	394.57498964927237	21.416	0.048241	21.416	21.416	21.464	0	1470	52	0.7320868	0.03154522	0.7320868	444.97256	0	19.173615						50	3	2	NaN	NaN	NaN	0.67696	1	15854	15854		1.1768	0.4607	1	3593.6			10236	8087	5961	6082	8069	8069					0.11772946684504859
IKNFLKNQA	9	Unmodified	_IKNFLKNQA_					0	0	0			REV__nc|ENSG00000114982|Q9P2N6-7|KANSL3	REV__nc|ENSG00000114982|Q9P2N6-7|KANSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.31656586275	2	538.316566	1074.61858	1.7775	0.00095684	1.1301	0.00060835	2.9076	0.0015652	538.8183524540755	29.787	0.1448	29.787	29.715	29.86	0	1239	52	0.87444305	0.03129351	0.87444305	354.73962	0	12.694946						121	7	2	NaN	NaN	NaN	0.66529	1	11765	11765		2.1763	0.93449	1	10562	+		10237	9173	5962	6083	8070	8070					0.0842542460554796
IKNNENKMLL	10	Unmodified	_IKNNENKMLL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.83954782005	2	608.839548	1215.66454	0.64265	0.00039127	-2.2252	-0.0013548	-1.5825	-0.00096352	608.8375053631071	27.446	0.19304	27.436	27.411	27.604	-0.010126	1128	46	0.9424274	0.027507722	0.94090796	381.75726	0	11.142792						140	9	3	NaN	NaN	NaN	0.56741	1	16213	16213		11.739	0	1	16949			10238	1342	5963	6084	8071	8071					0.06533701725470564
IKPLSSDQ	8	Unmodified	_IKPLSSDQ_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4832733466001	1	887.483273	886.475997	0.77521	0.00068799	0.91278	0.00081008	1.688	0.0014981	887.4848564624239	35.529	0.19297	35.529	35.481	35.674	0.00053024	456	55	1.348284	0.032227635	1.3467646	274.22058	0	6.5546265						202	9	4	NaN	NaN	NaN	0.84756	1	5775	5775		1.072	0.67635	1	29452	+		10239	11090	5964	6085	8072	8072					0.02821792143527091
IKRYKSYYNLF	11	Unmodified	_IKRYKSYYNLF_					0	0	0			REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.9416381662	3	498.941638	1493.80309	1.6815	0.00083895	4.4617	0.0022261	6.1431	0.0030651	498.9434687019236	21.657	0.1687	21.657	21.609	21.778	0	1341	28	0.8117308	0.016631722	0.8117308	492.18686	0	10.084534						98	8	2	NaN	NaN	NaN	0.77082	1	20563	20563		1.8502	1.3594	1	8908.4	+		10240	13495	5965	6086	8073	8073					0.07593567965454895
IKSASTLK	8	Unmodified	_IKSASTLK_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.5247442308	1	847.524744	846.517468	1.9736	0.0016727	4.2049	0.0035638	6.1785	0.0052364	847.5277743466938	26.094	0.072403	26.083	26.059	26.131	-0.011137	387	61	1.389409	0.035705566	1.3878895	282.78854	0	7.267212						82	4	2	NaN	NaN	NaN	0.77891	1	5218	5218		12.049	0	1	6332.7	+		10241	10117	5966	6087	8074	8074					0.08806972902846155
IKSASTLK	8	Unmodified						0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	847.524744	846.517468	2.1323	0.0018072	2.2654	0.00192	4.3978	0.0037272	847.527790011381	26.07	0.072418	26.07	26.046	26.119	0	390	58	1.3876231	0.033922076	1.3876231	282.42505		6.904236	-0.0064029	-0.00080285	-0.00013325	NaN	12.049	94	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7268.2	+		10242	10117	5966	6087							0.08806972902846155
IKSASTLK	8	Unmodified						0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	847.524744	846.517468	1.9736	0.0016727	4.2049	0.0035638	6.1785	0.0052364	847.5277743466938	26.094	0.072403	26.083	26.059	26.131	-0.011137	387	61	1.389409	0.035705566	1.3878895	282.78854		7.267212	0.0064029	0.00084091	0.00013325	NaN	12.049	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6332.7	+		10243	10117	5966	6087							0.08806972902846155
IKSIPQEET	9	Unmodified	_IKSIPQEET_					0	0	0		ENST00000377808.8_1_17:38785039-38786490:-|nuORF	ENST00000377808.8_1_17:38785039-38786490:-|nuORF	ENST00000377808.8_1_17:38785039-38786490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7822215189	2	522.782222	1043.54989	1.1794	0.00061659	-2.2452	-0.0011738	-1.0658	-0.00055717	522.7811290767385	34.203	0.12059	34.203	34.155	34.276	0	1254	130	0.8652351	0.07920545	0.8652351	351.1364	0	32.14377						291	6	4	NaN	NaN	NaN	0.31737	1	10360	10360		17.799	2.3363	1	53183			10244	6711	5967	6088	8075	8075					0.02985715515183074
IKTFGTNG	8	Unmodified	_IKTFGTNG_					0	0	0		tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4464939098001	1	837.446494	836.439217	1.1647	0.00097535	4.9745	0.0041659	6.1391	0.0051412	837.4503717360776	24.26	0.024132	24.248	24.248	24.272	-0.012749	435	106	1.360811	0.06258142	1.3592916	277.02124	0	12.739746						166	2	3	NaN	NaN	NaN	0.75347	1	5095	5095		15.463	1.0377	1	34588			10245	14000	5968	6089	8076	8076					0.014455403176157233
IKTNETSIP	9	Unmodified	_IKTNETSIP_					0	0	0			REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5466018849	1	1002.5466	1001.53933	1.2197	0.0012228	6.6266	0.0066435	7.8463	0.0078663	1002.5546854387383	30.366	0.12065	30.359	30.335	30.456	-0.0064106	198	79	1.5015416	0.0461272	1.5000222	304.85413	0	9.365112						298	6	3	NaN	NaN	NaN	0.39244	1	8490	8490		14.042	4.2956	1	45059	+		10246	12718	5969	6090	8077	8077					0.038617328607642776
IKVRHGQVSYP	11	Unmodified	_IKVRHGQVSYP_					0	0	0			REV__ENST00000512928.1_1_5:137708527-137717285:+|nuORF	REV__ENST00000512928.1_1_5:137708527-137717285:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3645786878501	2	642.364579	1282.7146	2.9162	0.0018732	-4.5116	-0.0028981	-1.5955	-0.0010249	642.3631088794118	41.328	1.4183	41.336	40.783	42.201	0.0082626	1224	106	0.883646	0.064413846	0.88212657	357.73605	0	26.077362						4458	60	4	NaN	NaN	NaN	0.74155	1	17656	17656		4.7291	0	1	5956800	+		10247	9321	5970	6091	8078	8078					0.0845557244565498
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3553566722501	2	642.355357	1282.69616	1.1394	0.00073192	-2.8165	-0.0018092	-1.6771	-0.0010773	642.3542881130385	31.187	0.19304	31.187	31.139	31.332	0	1119	49	0.9479278	0.029330492	0.9479278	383.75998	0	11.874176						263	9	4	NaN	NaN	NaN	0.19486	1	18475	18475		42.779	22.33	1	47123			10248	5964	5971	6092	8079	8079					0.06612017751081112
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3553566722501	2	642.355357	1282.69616	1.6317	0.0010481	-3.5987	-0.0023117	-1.9671	-0.0012636	642.3531097443706	31.234	0.26542	31.229	31.157	31.422	-0.0050716	1119	46	0.9479278	0.027495861	0.94640833	383.75998	0	11.131439						334	12	4	NaN	NaN	NaN	0.40597	1	17653	17653		34.454	11.12	1	55456			10249	5964	5971	6092	8080	8080					0.06612017751081112
IKYQNIQNK	9	Unmodified	_IKYQNIQNK_					0	0	0		nc|ENSG00000185261|Q8IV33-2|KIAA0825;nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825	nc|ENSG00000185261|Q8IV33-2|KIAA0825	nc|ENSG00000185261|Q8IV33-2|KIAA0825	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8247550356001	2	574.824755	1147.63496	1.4323	0.00082333	-1.8275	-0.0010505	-0.39515	-0.00022714	574.8235193864862	28.967	0.1207	28.967	28.894	29.015	0	1176	52	0.9130621	0.031229258	0.9130621	370.108	0	12.658752						121	6	3	NaN	NaN	NaN	0.56671	1	14738	14738		6.8632	0.613	1	10888			10250	5403	5972	6093	8081	8081					0.0670450577167685
IKYSRDFL	8	Unmodified	_IKYSRDFL_					0	0	0		ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5727570559	1	1041.57276	1040.56548	1.8473	0.0019241	-11.145	-0.011608	-9.2978	-0.0096844	1041.5605985038433	30.029	0.14485	30.029	30.004	30.149	0	201	52	1.4997677	0.03015852	1.4997677	304.33893	0	6.119873						104	7	2	NaN	NaN	NaN	0.76406	1	10240	10240		14.042	1.4537	1	9631.1			10251	6109	5973	6094	8082	8082					0.0468204682290434
ILAALRDRVH	10	Unmodified	_ILAALRDRVH_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.57176815656663	3	388.571768	1162.69348	2.1279	0.00082682	2.4041	0.00093416	4.5319	0.001761	388.57261535520604	40.03	0.072174	40.036	40.012	40.084	0.0060501	1440	46	0.7506418	0.027806818	0.7491224	456.332	0	16.904419						41	4	2	NaN	NaN	NaN	0.77928	1	14726	14726		0.21374	0.029419	1	2450.3			10252	6776	5974	6095	8083	8083					0.1186360713677459
ILAGNFVNLFL	11	Unmodified	_ILAGNFVNLFL_					0	0	0			REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	REV__ENST00000489023.5_1_2:210693994-210832362:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8555238477501	2	610.855524	1219.69649	0.9828	0.00060035	-1.8955	-0.0011579	-0.91269	-0.00055752	610.8541428756257	38.513	0.096153	38.517	38.445	38.542	0.0040245	1140	70	0.93509084	0.04220128	0.9335714	378.7713	0	17.094208						150	5	3	NaN	NaN	NaN	0.59385	1	16298	16298		14.425	1.8553	1	12545	+		10253	9896	5975	6096	8084	8084					0.09543437470938443
ILAPLWCPL	9	Unmodified	_ILAPLWCPL_					0	0	0		ENST00000359867.7_2_22:38687614-38687800:-|nuORF	ENST00000359867.7_2_22:38687614-38687800:-|nuORF	ENST00000359867.7_2_22:38687614-38687800:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5852359976	1	1025.58524	1024.57796	2.5026	0.0025666	-9.4288	-0.0096701	-6.9262	-0.0071034	1025.5740063195183	25.419	0.048262	25.419	25.395	25.443	0	135	37	1.5387528	0.021239877	1.5387528	312.3137	0	4.3109436						49	3	2	NaN	NaN	NaN	0.58547	1	9569	9569		6.0903	1.1806	1	3604.3			10254	6593	5976	6097	8085	8085					0.06665366961578911
ILAPLWCPL	9	Unmodified						0	0	0		ENST00000359867.7_2_22:38687614-38687800:-|nuORF	ENST00000359867.7_2_22:38687614-38687800:-|nuORF	ENST00000359867.7_2_22:38687614-38687800:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1025.58524	1024.57796	2.7238	0.0027935	-9.1046	-0.0093375	-6.3808	-0.006544	1025.5752213555268	25.443	0.072392	25.431	25.407	25.479	-0.012011	138	34	1.5369828	0.01947093	1.5354633	311.95444		3.9519043	0.0059078	0.00017742	-0.0016448	NaN	6.0903	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3212.8			10255	6593	5976	6097							0.06665366961578911
ILDEDFEI	8	Unmodified	_ILDEDFEI_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4775192667001	1	993.477519	992.470243	2.3567	0.0023413	-2.5695	-0.0025527	-0.21281	-0.00021142	993.4739088789719	28.508	0.33785	28.508	28.363	28.701	0	252	148	1.4695803	0.087056875	1.4695803	298.40216	0	17.677124						765	15	3	NaN	NaN	NaN	0.35353	1	8305	8305		38.918	0	1	187470			10256	5462	5977	6098	8086	8086					-0.026293511587937246
ILDEDFEI	8	Unmodified						0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	993.477519	992.470243	1.6616	0.0016507	-1.1006	-0.0010934	0.56101	0.00055735	993.4750902373743	28.507	0.31369	28.499	28.378	28.692	-0.0083485	246	145	1.4731345	0.08527565	1.4716152	299.12384		17.31546	-0.0045259	0.00066298	0.0010174	NaN	38.918	704	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168400			10257	5462	5977	6098							-0.026293511587937246
ILDKGNVA	8	Unmodified	_ILDKGNVA_					0	0	0			REV__tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	REV__tr|U7SNL3|U7SNL3_FUSNUPoly(A)polymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02031PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.4777940382	1	829.477794	828.470518	1.4327	0.0011884	-2.3848	-0.0019782	-0.95217	-0.0007898	829.4748720915455	37.792	0.096256	37.795	37.747	37.843	0.0028229	477	52	1.3357477	0.030458331	1.3342283	271.96143	0	6.2013855						92	5	2	NaN	NaN	NaN	0.84562	1	5008	5008		2.1763	0.73677	1	7916.1	+		10258	13449	5978	6099	8087	8087					0.04942113351705757
ILDPADPTL	9	Unmodified	_ILDPADPTL_					0	0	0		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.514239124	1	954.514239	953.506963	2.3048	0.0022	-1.0241	-0.00097748	1.2808	0.0012225	954.5133423623982	25.732	0.26544	25.732	25.612	25.877	0	267	121	1.4606913	0.07119143	1.4606913	296.76318	0	14.463684						802	12	4	NaN	NaN	NaN	8.7755E-05	1	7170	7170		123.66	73.825	1	171750			10259	2921	5979	6100	8088	8088					0.028349454577551114
ILDPADPTL	9	Unmodified	_ILDPADPTL_					0	0	0		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.514239124	1	954.514239	953.506963	2.4416	0.0023305	-1.0435	-0.00099602	1.3981	0.0013345	954.5137464465367	25.732	0.26541	25.721	25.6	25.865	-0.0116	264	127	1.4624695	0.07475102	1.46095	297.12445	0	15.18689						764	12	4	NaN	NaN	NaN	0.011206	1	7028	7028		89.256	36.632	1	167460			10260	2921	5979	6100	8089	8089					0.028349454577551114
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.81841005995005	2	509.81841	1017.62227	2.0753	0.001058	-1.6639	-0.0008483	0.4114	0.00020974	509.81746777899724	28.05	0.096537	28.05	28.026	28.122	0	1239	97	0.87444305	0.058959544	0.87444305	354.99097	0	23.935333						275	5	4	NaN	NaN	NaN	0.03623	1	9294	9294		52.758	15.456	1	63034			10261	1682	5980	6101	8090	8090					0.11416094379421793
ILEVTPSNP	9	Unmodified	_ILEVTPSNP_					0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.26620731394996	2	485.266207	968.517862	0.15927	7.7288E-05	-0.62598	-0.00030377	-0.46671	-0.00022648	485.26570851740297	55.218	0.072227	55.217	55.193	55.266	-0.00061798	1320	31	0.824661	0.018464744	0.8231416	335.00772	0	7.501068						59	4	2	NaN	NaN	NaN	0.66822	1	7420	7420		1.9246	0	1	5485.7	+		10262	13514	5981	6102	8091	8091					0.0323434783203993
ILEVTPSNP	9	Unmodified						0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.266207	968.517862	1.8726	0.00090872	-1.9462	-0.00094444	-0.073614	-3.5722E-05	485.26520827573165	55.22	0.09626	55.22	55.172	55.268	0	1323	31	0.8228144	0.018466711	0.8228144	334.25757		7.5018616	0.0013857	-0.00046871	-0.00016357	NaN	1.9246	65	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6108.3	+		10263	13514	5981	6102							0.0323434783203993
ILEVTPSNP	9	Unmodified						0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	485.266207	968.517862	0.15927	7.7288E-05	-0.62598	-0.00030377	-0.46671	-0.00022648	485.26570851740297	55.218	0.072227	55.217	55.193	55.266	-0.00061798	1320	31	0.824661	0.018464744	0.8231416	335.00772		7.501068	-0.0013857	0.00081264	0.00016357	NaN	1.9246	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5485.7	+		10264	13514	5981	6102							0.0323434783203993
ILFPYDYL	8	Unmodified	_ILFPYDYL_					0	0	0			REV__ENST00000261015.4_1_2:203776439-203776619:-|nuORF	REV__ENST00000261015.4_1_2:203776439-203776619:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.27604371875	2	522.276044	1042.53753	1.8577	0.00097021	-9.1109	-0.0047584	-7.2533	-0.0037882	522.2712028805827	15.846	0.40777	15.846	15.726	16.134	0	1287	55	0.8449601	0.033196986	0.8449601	342.91263	0	13.472412						603	18	4	NaN	NaN	NaN	0.54545	1	10326	10326		28.667	2.5516	1	153540	+		10265	11542	5982	6103	8092	8092					0.017967238427900156
ILFPYDYL	8	Unmodified						0	0	0			REV__ENST00000261015.4_1_2:203776439-203776619:-|nuORF	REV__ENST00000261015.4_1_2:203776439-203776619:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.276044	1042.53753	1.8577	0.00097021	-9.1109	-0.0047584	-7.2533	-0.0037882	522.2712028805827	15.846	0.40777	15.846	15.726	16.134	0	1287	55	0.8449601	0.033196986	0.8449601	342.91263		13.472412	0.0075132	-3.9221E-05	0.00075972	NaN	28.667	603	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153540	+		10266	11542	5982	6103							0.017967238427900156
ILFSLMIQPH	10	Unmodified	_ILFSLMIQPH_					0	0	0		ENST00000475582.5_1_2:27590663-27590978:-|nuORF	ENST00000475582.5_1_2:27590663-27590978:-|nuORF	ENST00000475582.5_1_2:27590663-27590978:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8362768496	2	599.836277	1197.658	1.1641	0.00069828	0.17601	0.00010558	1.3401	0.00080386	599.8359549044621	24.598	0.096416	24.586	24.586	24.682	-0.012394	1164	46	0.9204082	0.027543366	0.91888875	372.90063	0	11.159119						65	5	2	NaN	NaN	NaN	0.73444	1	15759	15759		5.6942	0.96509	1	5982.2			10267	7175	5983	6104	8093	8093					0.06707808564760853
ILFSLMIQPH	10	Unmodified						0	0	0		ENST00000475582.5_1_2:27590663-27590978:-|nuORF	ENST00000475582.5_1_2:27590663-27590978:-|nuORF	ENST00000475582.5_1_2:27590663-27590978:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.836277	1197.658	1.1166	0.00066979	1.8549	0.0011126	2.9715	0.0017824	599.8382066097313	24.598	0.048273	24.598	24.574	24.623	0	1167	43	0.91857195	0.025708497	0.91857195	372.15668		10.41571	0.0062453	0.00077659	-0.00015839	NaN	5.6942	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5071.7			10268	7175	5983	6104							0.06707808564760853
ILGEVKRGVG	10	Unmodified	_ILGEVKRGVG_					0	0	0			REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF	REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.3165658627502	2	514.316566	1026.61858	2.412	0.0012405	-4.1855	-0.0021527	-1.7735	-0.00091214	514.3155540187607	19.636	0.024048	19.636	19.636	19.66	0	1269	43	0.8560222	0.025808692	0.8560222	347.47217	0	10.476135						36	2	2	NaN	NaN	NaN	0.70677	1	9644	9644		7.5876	0.72439	1	2218.4	+		10269	12864	5984	6105	8094	8094					0.10633424605589425
ILGIDLLV	8	Unmodified	_ILGIDLLV_					0	0	0		ENST00000574829.5_1_17:4643771-4647168:+|nuORF;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.5549817267001	1	855.554982	854.547705	1.1991	0.0010259	-0.73216	-0.00062641	0.46694	0.00039949	855.5546888768504	36.131	0.12051	36.132	36.084	36.205	0.0011024	354	52	1.4090419	0.030325532	1.4075224	286.7414	0	6.1712646						117	6	2	NaN	NaN	NaN	0.59262	1	5326	5326		25.752	1.9013	1	14124			10270	3325	5985	6106	8095	8095					0.11461331568045807
ILGKFDVIYK	10	Unmodified	_ILGKFDVIYK_					0	0	0			REV__tr|U7SLG1|U7SLG1_FUSNUAnti-sigmafactorantagonistOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01921PE=3SV=1	REV__tr|U7SLG1|U7SLG1_FUSNUAnti-sigmafactorantagonistOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01921PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.24102506300005	3	399.241025	1194.70125	1.4596	0.00058275	-10.433	-0.0041652	-8.9732	-0.0035825	399.23763767359	35.215	0.048248	35.215	35.215	35.263	-4.5776E-05	1590	40	0.65766495	0.02424103	0.6561455	399.68396	0	14.732056						51	3	2	NaN	NaN	NaN	0.74434	1	15675	15675		5.0169	3.3184	1	3612.3	+		10271	13422	5986	6107	8096	8096					0.11168321613718035
ILGKIICL	8	Unmodified	_ILGKIICL_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5637722740001	1	872.563772	871.556496	1.3144	0.0011469	-2.9476	-0.002572	-1.6332	-0.0014251	872.5617919744899	29.256	0.07238	29.256	29.232	29.305	0	285	58	1.4500183	0.033810496	1.4500183	294.98895	0	6.878357						113	4	3	NaN	NaN	NaN	0.62311	1	5689	5689		23.85	6.0701	1	11810	+		10272	11823	5987	6108	8097	8097					0.11557981932867278
ILGKIICL	8	Unmodified	_ILGKIICL_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5637722740001	1	872.563772	871.556496	0.86549	0.0007552	-3.5656	-0.0031113	-2.7002	-0.0023561	872.5593676326048	29.304	0.096514	29.296	29.248	29.344	-0.0077229	285	55	1.4500183	0.032025933	1.4484988	294.98895	0	6.5152893						121	5	3	NaN	NaN	NaN	0.49126	1	5554	5554		31.561	0.95093	1	14319	+		10273	11823	5987	6108	8098	8098					0.11557981932867278
ILGKIICL	8	Unmodified						0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.563772	871.556496	1.3144	0.0011469	-2.9476	-0.002572	-1.6332	-0.0014251	872.5617919744899	29.256	0.07238	29.256	29.232	29.305	0	285	58	1.4500183	0.033810496	1.4500183	294.98895		6.878357	-0.019876	0.00024249	0.00075972	NaN	31.561	113	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11810	+		10274	11823	5987	6108							0.11557981932867278
ILGKIICL	8	Unmodified						0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	872.563772	871.556496	0.86549	0.0007552	-3.5656	-0.0031113	-2.7002	-0.0023561	872.5593676326048	29.304	0.096514	29.296	29.248	29.344	-0.0077229	285	55	1.4500183	0.032025933	1.4484988	294.98895		6.5152893	0.019876	-0.00029682	-0.00075972	NaN	31.561	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14319	+		10275	11823	5987	6108							0.11557981932867278
ILGNKGGI	8	Unmodified	_ILGNKGGI_					0	0	0			REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4723147298001	1	771.472315	770.465038	1.2229	0.00094341	5.9792	0.0046128	7.202	0.0055562	771.4772812997712	35.771	0.16881	35.771	35.747	35.916	0	474	49	1.3375392	0.028661966	1.3375392	272.66037	0	5.842804						120	8	2	NaN	NaN	NaN	0.76633	1	4366	4366		13.737	1.1492	1	11739	+		10276	13560	5988	6109	8099	8099					0.0706243455990716
ILGNKGGI	8	Unmodified	_ILGNKGGI_					0	0	0			REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4723147298001	1	771.472315	770.465038	1.1941	0.00092123	4.828	0.0037247	6.0221	0.0046459	771.4754284665418	35.77	0.096367	35.77	35.746	35.843	0.00053024	474	55	1.3375392	0.03224826	1.3360198	272.6604	0	6.573883						117	5	2	NaN	NaN	NaN	0.66957	1	4293	4293		20.952	0	1	10701	+		10277	13560	5988	6109	8100	8100					0.0706243455990716
ILGNKGGI	8	Unmodified						0	0	0			REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	771.472315	770.465038	1.2229	0.00094341	5.9792	0.0046128	7.202	0.0055562	771.4772812997712	35.771	0.16881	35.771	35.747	35.916	0	474	49	1.3375392	0.028661966	1.3375392	272.66037		5.842804	0.00050888	0.00031646	0.00075972	NaN	20.952	120	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11739	+		10278	13560	5988	6109							0.0706243455990716
ILGNKGGI	8	Unmodified						0	0	0			REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	REV__tr|U7SZH8|U7SZH8_FUSNUHK97gp10familyphageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00876PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	771.472315	770.465038	1.1941	0.00092123	4.828	0.0037247	6.0221	0.0046459	771.4754284665418	35.77	0.096367	35.77	35.746	35.843	0.00053024	474	55	1.3375392	0.03224826	1.3360198	272.6604		6.573883	-0.00050888	-0.00057164	-0.00075972	NaN	20.952	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10701	+		10279	13560	5988	6109							0.0706243455990716
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	nc|ENSG00000280987|P43243-2|MATR3	nc|ENSG00000280987|P43243-2|MATR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5189305714001	1	924.518931	923.511654	2.3964	0.0022155	-1.6078	-0.0014864	0.7886	0.00072907	924.517603050654	26.119	0.2896	26.119	25.998	26.288	0	351	109	1.4108255	0.06415403	1.4108255	286.76468	0	13.039978						670	13	3	NaN	NaN	NaN	0.0055068	1	6479	6479		101.55	60.094	1	70293			10280	442	5989	6110	8101	8101					0.046838743911848724
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	nc|ENSG00000280987|P43243-2|MATR3	nc|ENSG00000280987|P43243-2|MATR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5189305714001	1	924.518931	923.511654	1.6779	0.0015513	-0.55995	-0.00051768	1.118	0.0010336	924.5182527822627	26.118	0.41025	26.107	25.987	26.397	-0.011137	348	106	1.412609	0.06236863	1.4110895	287.1272	0	12.6770935						738	18	3	NaN	NaN	NaN	0.030391	1	6354	6354		58.599	27.038	1	74092			10281	442	5989	6110	8102	8102					0.046838743911848724
ILHGAAAL	8	Unmodified	_ILHGAAAL_					0	0	0		ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4617500435	1	765.46175	764.454474	1.4615	0.0011187	-10.406	-0.0079657	-8.9449	-0.006847	765.4534901781589	34.805	0.14465	34.804	34.756	34.901	-0.0006485	471	70	1.3393306	0.041212678	1.3378111	273.06317	0	8.402466						179	7	2	NaN	NaN	NaN	0.77734	1	4207	4207		12.26	2.2081	1	19556			10282	3705	5990	6111	8103	8103					0.06282451905462949
ILHGAAAL	8	Unmodified						0	0	0		ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	765.46175	764.454474	1.3229	0.0010126	-8.4903	-0.006499	-7.1673	-0.0054863	765.4548747007774	34.806	0.16887	34.806	34.758	34.927	0	471	73	1.3393306	0.043006897	1.3393306	273.06317		8.7682495	0.0010555	0.00065641	0.00075972	NaN	12.26	183	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18500			10283	3705	5990	6111							0.06282451905462949
ILHPPRGL	8	Unmodified	_ILHPPRGL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5570474122002	1	902.557047	901.549771	1.4521	0.0013106	-2.0838	-0.0018808	-0.63174	-0.00057018	902.5554273567561	32.707	0.14482	32.707	32.611	32.756	0	288	49	1.4482387	0.028470516	1.4482387	294.4746	0	5.7890015						81	7	3	NaN	NaN	NaN	0.84727	1	6116	6116		1.2418	0	1	7070.8	+		10284	8457	5991	6112	8104	8104					0.09505805096512177
ILIAYPHLS	9	Unmodified	_ILIAYPHLS_					0	0	0			REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	REV__ENST00000366978.5_1_1:212899780-212899888:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.8027599957501	2	513.80276	1025.59097	2.5774	0.0013243	-6.3094	-0.0032418	-3.732	-0.0019175	513.7998347183083	18.484	0.071892	18.484	18.46	18.532	0	1269	73	0.8560222	0.044262707	0.8560222	347.4768	0	17.967133						195	4	3	NaN	NaN	NaN	0.11467	1	9607	9607		33.698	2.1373	1	20437	+		10285	11858	5992	6113	8105	8105					0.0791952134532039
ILIKERFLGF	10	Unmodified	_ILIKERFLGF_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3791661195501	2	618.379166	1234.74378	1.0547	0.00065223	-4.0869	-0.0025272	-3.0322	-0.001875	618.3767257451063	39.668	0.36161	39.673	39.625	39.987	0.0053368	1182	88	0.9093879	0.05330801	0.90786844	368.30972	0	21.59021						842	16	5	NaN	NaN	NaN	0.77421	1	16676	16676		1.9246	0.22244	1	223430			10286	5674	5993	6114	8106	8106					0.1357971674192413
ILINYARLVKN	11	Unmodified	_ILINYARLVKN_					0	0	0			REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.60647839673334	3	439.606478	1315.79761	2.1071	0.00092627	-3.938	-0.0017312	-1.831	-0.0008049	439.60423204813367	19.876	0.048132	19.861	19.813	19.861	-0.014141	1395	28	0.7784366	0.016662419	0.77691716	472.58408	0	10.115662						34	3	2	NaN	NaN	NaN	0.7686	1	18206	18206		2.239	0.26398	1	2665.6	+		10287	11429	5994	6115	8107	8107					0.15233889173646276
ILINYARLVKN	11	Unmodified						0	0	0			REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	439.606478	1315.79761	1.5541	0.00068319	-2.1093	-0.00092727	-0.55521	-0.00024407	439.94002663796135	19.804	0.024052	19.804	19.78	19.804	0	1395	28	0.7784366	0.016662419	0.7784366	472.58405		10.115631	-0.0286	0.0009322	0.00075972	NaN	2.239	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3005.5	+		10288	11429	5994	6115							0.15233889173646276
ILINYARLVKN	11	Unmodified						0	0	0			REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	REV__nc|ENSG00000278311|Q9H3C7-2|GGNBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	439.606478	1315.79761	2.1071	0.00092627	-3.938	-0.0017312	-1.831	-0.0008049	439.60423204813367	19.876	0.048132	19.861	19.813	19.861	-0.014141	1395	28	0.7784366	0.016662419	0.77691716	472.58408		10.115662	0.0286	-0.0014795	-0.00075972	NaN	2.239	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2665.6	+		10289	11429	5994	6115							0.15233889173646276
ILKVGVGC	8	Unmodified	_ILKVGVGC_					0	0	0		ENST00000492815.5_1_14:69676187-69701514:+|nuORF;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	ENST00000492815.5_1_14:69676187-69701514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4698718888002	1	788.469872	787.462595	1.5706	0.0012383	3.2296	0.0025464	4.8001	0.0037848	788.4723969446035	36.952	0.072208	36.952	36.928	37	0	492	43	1.3267875	0.02508998	1.3267875	270.36646	0	5.112732						62	4	2	NaN	NaN	NaN	0.84651	1	4596	4596		1.6704	1.2747	1	4564.1			10290	918	5995	6116	8108	8108					0.060362628305938415
ILLMKGGG	8	Unmodified	_ILLMKGGG_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4698718888003	1	788.469872	787.462595	1.7853	0.0014077	4.2037	0.0033145	5.989	0.0047221	788.4736583737284	36.95	0.096085	36.952	36.928	37.024	0.0022507	486	34	1.3303722	0.019714713	1.3288528	271.09692	0	4.0173645						75	5	2	NaN	NaN	NaN	0.83849	1	4502	4502		4.0537	0	1	4623.1	+		10291	9307	5996	6117	8109	8109					0.0603626283060521
ILLMKGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	788.469872	787.462595	1.7853	0.0014077	4.2037	0.0033145	5.989	0.0047221	788.4736583737284	36.95	0.096085	36.952	36.928	37.024	0.0022507	486	34	1.3303722	0.019714713	1.3288528	271.09692		4.0173645	1.7975E-05	0.00047991	0.0010326	NaN	4.0537	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4623.1	+		10292	9307	5996	6117							0.0603626283060521
ILLSLGSY	8	Unmodified	_ILLSLGSY_					0	0	0			REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562002	1	865.502946	864.49567	1.1156	0.00096554	-1.0622	-0.00091932	0.0534	4.6218E-05	865.5015870858048	37.41	0.072178	37.41	37.362	37.434	0	507	46	1.3178225	0.02690363	1.3178225	268.1293	0	5.4739075						97	4	2	NaN	NaN	NaN	0.8439	1	5597	5597		3.1533	0	1	12102	+		10293	10790	5997	6118	8110	8110					0.05800168154291896
ILMRVLALATF	11	Unmodified	_ILMRVLALATF_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1247.7544265908998	1	1247.75443	1246.74715	1.5144	0.0018897	-3.4213	-0.004269	-1.9069	-0.0023793	1247.750947488554	35.046	0.12066	35.046	34.998	35.119	-4.5776E-05	72	79	1.5758814	0.045932055	1.5743619	319.09146	0	9.300537						423	6	5	NaN	NaN	NaN	0.77466	1	16961	16961		1.1768	0.37694	1	87825	+		10294	9379	5998	6119	8111	8111					0.13364643524278108
ILMRVLALATF	11	Unmodified						0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1247.75443	1246.74715	1.5144	0.0018897	-3.4213	-0.004269	-1.9069	-0.0023793	1247.750947488554	35.046	0.12066	35.046	34.998	35.119	-4.5776E-05	72	79	1.5758814	0.045932055	1.5743619	319.09146		9.300537	-0.00073672	0.00039615	0.00012336	NaN	1.1768	423	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87825	+		10295	9379	5998	6119							0.13364643524278108
ILNPMHIF	8	Unmodified	_ILNPMHIF_					0	0	0			REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.77040562235004	2	492.770406	983.526258	1.6934	0.00083447	0.069651	3.4322E-05	1.7631	0.00086879	492.7700852229556	28.774	0.072365	28.774	28.75	28.822	0	1311	25	0.83019954	0.014766991	0.83019954	337.1856	0	5.9976196						50	4	2	NaN	NaN	NaN	0.81251	1	8009	8009		7.5404	1.45	1	3610.5	+		10296	8157	5999	6120	8112	8112					0.03383623267677649
ILNPMHIF	8	Unmodified						0	0	0			REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.770406	983.526258	1.6934	0.00083447	0.069651	3.4322E-05	1.7631	0.00086879	492.7700852229556	28.774	0.072365	28.774	28.75	28.822	0	1311	25	0.83019954	0.014766991	0.83019954	337.1856		5.9976196	-0.0075143	0.0014309	0.00075972	NaN	7.5404	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3610.5	+		10297	8157	5999	6120							0.03383623267677649
ILNPMHIF	8	Unmodified						0	0	0			REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	REV__B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.770406	983.526258	1.1766	0.00057982	-2.2007	-0.0010844	-1.024	-0.00050461	492.76920298323176	28.797	0.096525	28.789	28.765	28.861	-0.0083504	1311	34	0.83019954	0.020305753	0.8286801	337.1856		8.247162	0.0075143	-0.0008066	-0.00075972	NaN	7.5404	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4115.2	+		10298	8157	5999	6120							0.03383623267677649
ILNTEVYGGPI	11	Unmodified	_ILNTEVYGGPI_					0	0	0		tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	tr|U7STI4|U7STI4_FUSNUM18familyaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01357PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.5484062661667	3	392.548406	1174.62339	1.5601	0.00061242	0.026992	1.0596E-05	1.5871	0.00062302	392.54819181214344	17.069	0.1681	17.069	17.021	17.189	0	1455	46	0.7413668	0.027837038	0.7413668	450.63998	0	16.920746						207	8	4	NaN	NaN	NaN	0.62211	1	15642	15642		6.3563	0.65913	1	29764			10299	13857	6000	6121	8113	8113					0.04306263957664669
ILNYSSWNF	9	Unmodified	_ILNYSSWNF_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.27710635125	2	572.277106	1142.53966	1.4088	0.00080622	-8.7322	-0.0049972	-7.3234	-0.004191	572.7732382298173	23.971	0.072355	23.958	23.958	24.03	-0.01305	1239	61	0.87444305	0.03680992	0.8729236	354.47263	0	14.9216						83	4	2	NaN	NaN	NaN	0.54912	1	14060	14060		7.5876	0.72439	1	7534.1	+		10300	9436	6001	6122	8114	8114					-0.02590847419378406
ILPAFILL	8	Unmodified	_ILPAFILL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.5964526109002	1	899.596453	898.589176	0.96519	0.00086828	0.56916	0.00051201	1.5343	0.0013803	899.5970613210128	39.983	0.096226	39.983	39.959	40.056	0	258	43	1.4660252	0.024885178	1.4660252	298.10596	0	5.0602417						85	5	2	NaN	NaN	NaN	0.10151	1	6044	6044		64	0	1	5837.3			10301	5923	6002	6123	8115	8115					0.13582512327377572
ILPALLHLL	9	Unmodified	_ILPALLHLL_					0	0	0		ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.83914550205003	2	501.839146	1001.66374	1.6073	0.00080662	-0.46677	-0.00023424	1.1406	0.00057238	501.8391820353376	34.469	0.16893	34.469	34.421	34.589	0	1263	46	0.85970795	0.027638733	0.85970795	349.08325	0	11.222687						143	8	2	NaN	NaN	NaN	0.16059	1	8675	8675		27.861	0	1	21475			10302	5415	6003	6124	8116	8116					0.1629727513875423
ILPDGDHD	8	Unmodified	_ILPDGDHD_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.20360705714995	2	441.203607	880.392661	1.5423	0.00068049	-2.1394	-0.00094391	-0.59706	-0.00026342	441.2026597931945	16.326	0.38382	16.326	16.23	16.614	0	1368	67	0.7950918	0.040701747	0.7950918	323.44778	0	16.557678						450	17	3	NaN	NaN	NaN	0.40747	1	5804	5804		36.036	7.3698	1	145620			10303	3699	6004	6125	8117	8117					-0.05231944304330227
ILPDGDHD	8	Unmodified	_ILPDGDHD_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC;ENST00000566146.1_1_16:30080209-30080764:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.20360705714995	2	441.203607	880.392661	1.8901	0.00083392	-1.0053	-0.00044354	0.88479	0.00039037	441.2032206141047	16.323	0.33561	16.31	16.214	16.55	-0.012995	1368	61	0.7950918	0.036997557	0.79357237	323.44778	0	15.050812						531	15	3	NaN	NaN	NaN	0.40747	1	5682	5682		36.036	5.2452	1	161350			10304	3699	6004	6125	8118	8118					-0.05231944304330227
ILPERLESE	9	Unmodified	_ILPERLESE_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2954960696501	2	543.295496	1084.57644	2.1926	0.0011913	-7.7102	-0.0041889	-5.5176	-0.0029977	543.2909757521452	18.532	0.14389	18.532	18.508	18.652	0	1260	79	0.8615505	0.047909796	0.8615505	349.46887	0	19.433533						195	7	3	NaN	NaN	NaN	0.13602	1	12177	12177		30.61	4.4952	1	21295			10305	6026	6005	6126	8119	8119					0.03753404406529626
ILPERLESE	9	Unmodified						0	0	0		ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.295496	1084.57644	2.1097	0.0011462	-9.9399	-0.0054003	-7.8302	-0.0042541	543.2897085881068	18.602	0.072002	18.588	18.588	18.66	-0.014059	1266	55	0.85786515	0.03318268	0.8563457	347.974		13.459778	0.027615	-0.0011459	-0.0026024	NaN	30.61	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6693.6			10306	6026	6005	6126							0.03753404406529626
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.31075220335	2	525.310752	1048.60695	1.394	0.00073229	-1.3964	-0.00073353	-0.0023619	-1.2407E-06	525.3097499329236	29.498	0.41026	29.498	29.329	29.739	0	1266	67	0.85786515	0.040530264	0.85786515	348.12363	0	16.447266						455	18	3	NaN	NaN	NaN	0.11656	1	10586	10586		33.425	16.841	1	84024			10307	3026	6006	6127	8120	8120					0.08459227582216045
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.31075220335	2	525.310752	1048.60695	1.0826	0.00056872	-1.0042	-0.00052753	0.078397	4.1183E-05	525.3103217824171	29.497	0.36193	29.49	29.369	29.731	-0.0070648	1266	76	0.85786515	0.04605466	0.8563457	348.12363	0	18.689087						510	16	4	NaN	NaN	NaN	0.048656	1	10365	10365		47.482	29.683	1	86808			10308	3026	6006	6127	8121	8121					0.08459227582216045
ILPIVWNTL	9	Unmodified	_ILPIVWNTL_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.6451937175	1	1068.64519	1067.63792	1.0377	0.001109	0.67583	0.00072222	1.7136	0.0018312	1068.6456961923457	34.877	0.096432	34.877	34.829	34.926	-4.5776E-05	87	82	1.5670487	0.047726512	1.5655292	317.88632	0	9.681641						186	5	3	NaN	NaN	NaN	0.0072287	1	11193	11193		98.041	36.064	1	19101			10309	5793	6007	6128	8122	8122					0.10680380896474162
ILPKVIYRF	9	Unmodified	_ILPKVIYRF_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|45|1|sense;L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|40|3|sense;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|23|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|58|1|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|163|3|sense	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.5778600986	3	383.57786	1147.71175	1.6697	0.00064048	-1.7442	-0.00066904	-0.074475	-2.8567E-05	383.576864547244	22.742	0.072392	22.742	22.694	22.766	0	1410	31	0.76917666	0.018524826	0.76917666	467.67123	0	11.263367						77	4	3	NaN	NaN	NaN	0.27507	1	14742	14742		20.513	12.236	1	7592.5			10310	8068	6008	6129	8123	8123					0.14380349058797037
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.6237299939	1	1011.62373	1010.61645	1.5346	0.0015524	0.80564	0.000815	2.3402	0.0023674	1011.6237171988599	34.733	0.14457	34.732	34.612	34.756	-0.0006485	162	49	1.5228153	0.028346896	1.5212959	309.1356	0	5.7545166						155	7	2	NaN	NaN	NaN	0.18779	1	8839	8839		26.115	1.2138	1	14348			10311	1604	6009	6130	8124	8124					0.1115699586774781
ILPPQLALF	9	Unmodified						0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1011.62373	1010.61645	1.5285	0.0015463	0.77846	0.00078751	2.307	0.0023338	1011.6248034538586	34.734	0.26532	34.734	34.638	34.903	0	165	91	1.5210435	0.053195596	1.5210435	308.7759		10.798828	0.0010087	-1.2905E-05	-0.00012617	NaN	26.115	205	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16942			10312	1604	6009	6130							0.1115699586774781
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5870101365997	1	1050.58701	1049.57973	1.9891	0.0020898	-0.523	-0.00054946	1.4661	0.0015403	1050.5869096394254	31.983	0.21724	31.983	31.887	32.104	0	108	115	1.5546752	0.06724548	1.5546752	315.4455	0	13.644165						749	10	4	NaN	NaN	NaN	0.013314	1	10630	10630		82.858	26.911	1	148000			10313	7169	6010	6131	8125	8125					0.05692699251153499
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5870101365997	1	1050.58701	1049.57973	1.1579	0.0012164	-1.1626	-0.0012214	-0.0047525	-4.9929E-06	1050.5861314517444	31.982	0.2172	31.979	31.882	32.099	-0.0037594	105	115	1.5564433	0.06723833	1.5549239	315.80426	0	13.642731						784	10	4	NaN	NaN	NaN	0.023074	1	10410	10410		68.108	29.19	1	145790			10314	7169	6010	6131	8126	8126					0.05692699251153499
ILPSSLDI	8	Unmodified	_ILPSSLDI_					0	0	0			REV__TRMU-GTSE1|1|fusion	REV__TRMU-GTSE1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4978607783002	1	857.497861	856.490584	1.6675	0.0014299	-1.3538	-0.0011609	0.31372	0.00026901	857.4965478509394	30.004	0.072393	29.997	29.973	30.045	-0.0064106	366	34	1.4019053	0.01963079	1.4003859	285.27887	0	3.9947205						52	4	2	NaN	NaN	NaN	0.57691	1	5358	5358		26.732	4.6052	1	3167	+		10315	8609	6011	6132	8127	8127					0.05659864291669692
ILRDFHEQRLD	11	Unmodified	_ILRDFHEQRLD_					0	0	0			REV__ENSG00000273604|ENST00000621654|EPOP	REV__ENSG00000273604|ENST00000621654|EPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.38095703355	2	721.380957	1440.74736	0.83782	0.00060439	-1.3265	-0.00095688	-0.48863	-0.00035249	721.3810297467357	30.777	0.048264	30.777	30.753	30.801	0	1053	43	0.9882094	0.025600612	0.9882094	399.59973	0	10.352081						96	3	4	NaN	NaN	NaN	0.71564	1	20328	20328		6.4299	0	1	5838.9	+		10316	11416	6012	6133	8128	8128					0.044617347778284966
ILSEVTAVF	9	Unmodified	_ILSEVTAVF_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5506246303	1	978.550625	977.543348	1.5416	0.0015086	-4.9954	-0.0048883	-3.4538	-0.0033797	978.5433257417151	29.69	0.048225	29.683	29.659	29.707	-0.0070648	237	61	1.4784646	0.035527706	1.4769452	300.26892	0	7.2154846						83	3	2	NaN	NaN	NaN	0.04947	1	7662	7662		47.136	12.697	1	10482			10317	3054	6013	6134	8129	8129					0.05367822354469354
ILSLFRNLYSE	11	Unmodified	_ILSLFRNLYSE_					0	0	0			REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.8719021934502	2	677.871902	1353.72925	1.506	0.0010209	0.040374	2.7368E-05	1.5464	0.0010483	677.8713124234171	30.222	0.12063	30.222	30.198	30.318	0	1098	55	0.960755	0.03296125	0.960755	388.73547	0	13.336609						137	6	3	NaN	NaN	NaN	0.6875	1	19595	19595		8.2775	1.2932	1	15262	+		10318	12671	6014	6135	8130	8130					0.06653599803166799
ILSLFRNLYSE	11	Unmodified						0	0	0			REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	677.871902	1353.72925	1.506	0.0010209	0.040374	2.7368E-05	1.5464	0.0010483	677.8713124234171	30.222	0.12063	30.222	30.198	30.318	0	1098	55	0.960755	0.03296125	0.960755	388.73547		13.336609	-0.020444	0.001518	-0.0019875	NaN	8.2775	137	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15262	+		10319	12671	6014	6135							0.06653599803166799
ILSLFRNLYSE	11	Unmodified						0	0	0			REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.871902	1353.72925	0.85724	0.0005811	-2.2245	-0.0015079	-1.3673	-0.00092683	677.8691937039808	30.269	0.14475	30.263	30.214	30.359	-0.0064106	1089	40	0.96624947	0.023804069	0.96473	390.95862		9.63147	0.020444	-0.0015526	0.0019875	NaN	8.2775	151	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12614	+		10320	12671	6014	6135							0.06653599803166799
ILSLKKSWSQ	10	Unmodified	_ILSLKKSWSQ_					0	0	0		ENST00000374700.6_1_2:201476130-201476193:+|nuORF	ENST00000374700.6_1_2:201476130-201476193:+|nuORF	ENST00000374700.6_1_2:201476130-201476193:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.35060564535	2	595.350606	1188.68666	1.6931	0.001008	-1.6584	-0.00098733	0.034707	2.0663E-05	595.3499295471879	18.892	0.071999	18.892	18.868	18.94	0	1125	49	0.9442611	0.029346347	0.9442611	382.59744	0	11.8905945						64	4	2	NaN	NaN	NaN	0.6772	1	16130	16130		9.6116	1.3668	1	4802.4			10321	6689	6015	6136	8131	8131					0.09986249465555375
ILSSLSHD	8	Unmodified	_ILSSLSHD_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.2296248424	2	436.229625	870.444697	0.62434	0.00027236	-2.1226	-0.00092594	-1.4983	-0.00065358	436.22922513340166	35.53	0.14474	35.53	35.506	35.651	0	1404	103	0.77288127	0.06297773	0.77288127	314.46756	0	25.624176						286	7	3	NaN	NaN	NaN	0.84207	1	5666	5666		3.5732	0.41988	1	52933			10322	367	6016	6137	8132	8132					0.004292191094350528
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant;nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.6183102650001	1	970.61831	969.611034	1.6213	0.0015737	-0.00016324	-1.5845E-07	1.6211	0.0015735	970.6181659135241	32.49	0.14474	32.49	32.442	32.587	0	204	82	1.4979934	0.047919154	1.4979934	304.2697	0	9.733276						242	7	4	NaN	NaN	NaN	0.02781	1	7601	7601		61.977	14.937	1	42916			10323	65	6017	6138	8133	8133					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant;nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.6183102650001	1	970.61831	969.611034	0.91951	0.00089249	-0.29861	-0.00028983	0.6209	0.00060266	970.6178257771893	32.465	0.14478	32.462	32.438	32.583	-0.0031052	201	94	1.4997677	0.055024147	1.4982482	304.6301	0	11.176422						264	7	4	NaN	NaN	NaN	0.03623	1	7460	7460		52.758	21.197	1	44596			10324	65	6017	6138	8134	8134					0.12501272285282994
ILTHCASAFP	10	Unmodified	_ILTHCASAFP_					0	0	0		ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2682270741501	2	530.268227	1058.5219	0.91506	0.00048522	-10.887	-0.0057728	-9.9716	-0.0052876	530.2625309672765	28.749	0.36197	28.74	28.596	28.958	-0.0083504	1236	130	0.876284	0.079274	0.8747646	355.55493	0	32.16568						809	16	3	NaN	NaN	NaN	0.29898	1	10782	10782		27.789	1.0573	1	112470			10325	757	6018	6139	8135	8135					-0.005018859458914449
ILTINIKK	8	Unmodified	_ILTINIKK_					0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.6346290312002	1	942.634629	941.627353	1.6001	0.0015083	1.6168	0.001524	3.2169	0.0030324	942.6360474153596	59.037	0.14404	59.037	58.941	59.085	0	207	52	1.496219	0.030161738	1.496219	304.0358	0	6.128937						173	7	3	NaN	NaN	NaN	0.84727	1	6861	6861		1.2418	0	1	14976	+		10326	13518	6019	6140	8136	8136					0.15420398242054034
ILTINIKK	8	Unmodified						0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	942.634629	941.627353	1.6001	0.0015083	1.6168	0.001524	3.2169	0.0030324	942.6360474153596	59.037	0.14404	59.037	58.941	59.085	0	207	52	1.496219	0.030161738	1.496219	304.0358		6.128937	0.013346	-0.00080005	-0.0010146	NaN	1.2418	173	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14976	+		10327	13518	6019	6140							0.15420398242054034
ILVPHPGG	8	Unmodified	_ILVPHPGG_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4617500435002	1	789.46175	788.454474	-0.19805	-0.00015635	7.7512	0.0061192	7.5531	0.0059629	789.4675770579142	53.85	0.14457	53.849	53.753	53.897	-0.00059509	384	43	1.3911947	0.02499926	1.3896753	283.48492	0	5.094116						157	7	3	NaN	NaN	NaN	0.84876	1	4523	4523		0.39566	0	1	16784			10328	3301	6020	6141	8137	8137					0.05178451905476322
ILVYDYWPFS	10	Unmodified	_ILVYDYWPFS_					0	0	0		ENST00000418115.5_1_3:49397482-49397617:-|nuORF	ENST00000418115.5_1_3:49397482-49397617:-|nuORF	ENST00000418115.5_1_3:49397482-49397617:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.8850184010999	3	434.885018	1301.63323	1.2084	0.00052549	3.2699	0.001422	4.4783	0.0019475	435.2205296496409	21.513	0.096445	21.513	21.488	21.585	0	1434	67	0.75435036	0.040763497	0.75435036	458.01315	0	24.750092						113	5	3	NaN	NaN	NaN	0.73444	1	18808	18808		2.7042	0	1	7720.9			10329	6895	6021	6142	8138	8138					-0.0055254803698971955
ILYHGKLN	8	Unmodified	_ILYHGKLN_					0	0	0			REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.2794520749501	2	479.279452	956.544351	1.7771	0.00085173	-4.9069	-0.0023518	-3.1298	-0.0015001	479.2768679765959	28.219	0.26542	28.219	28.122	28.388	0	1287	85	0.8449601	0.051600754	0.8449601	343.31412	0	20.96579						303	12	3	NaN	NaN	NaN	0.8439	1	7257	7257		3.1533	1.483	1	32765	+		10330	11886	6022	6143	8139	8139					0.06434081514055379
IMAYVSENI	9	Unmodified	_IMAYVSENI_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5128589155	1	1039.51286	1038.50558	0.5559	0.00057787	-0.099018	-0.00010293	0.45689	0.00047494	1039.5112006852708	31.645	0.072395	31.64	31.616	31.688	-0.0044174	162	79	1.5228153	0.046078324	1.5212959	309.02383	0	9.350647						139	4	3	NaN	NaN	NaN	0.39244	1	9928	9928		14.042	1.4537	1	13287			10331	7997	6023	6144	8140	8140					-0.012130119026551256
IMCYLYYFFSL	11	Unmodified	_IMCYLYYFFSL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.84291025095	2	731.84291	1461.67127	1.5081	0.0011037	-2.3111	-0.0016914	-0.80294	-0.00058763	732.3440110613353	25.105	0.096518	25.105	25.057	25.153	0	1056	70	0.9863805	0.042060494	0.9863805	398.80588	0	17.005585						104	5	2	NaN	NaN	NaN	0.71838	1	20441	20441		6.2502	0.33044	1	8320.9	+		10332	9880	6024	6145	8141	8141					-0.04110121438156966
IMDPNQNV	8	Unmodified	_IMDPNQNV_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.72110970605	2	465.72111	929.427666	0.33825	0.00015753	3.2367	0.0015074	3.5749	0.0016649	465.7225219512069	32.296	0.33784	32.292	32.123	32.461	-0.0037613	1272	190	0.854179	0.11625898	0.8526596	347.20322	0	47.25647						1110	15	4	NaN	NaN	NaN	0.67593	1	6445	6445		20.555	1.2707	1	182220			10333	2052	6025	6146	8142	8142					-0.03987024768025549
IMEIGMGDMK	10	Unmodified	_IMEIGMGDMK_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.7610629960001	2	562.761063	1123.50757	1.8597	0.0010466	5.5749	0.0031373	7.4346	0.0041839	562.7656461266307	18.53	0.26394	18.516	18.444	18.708	-0.01395	1233	55	0.87812483	0.033139646	0.8766054	356.03696	0	13.436523						268	12	3	NaN	NaN	NaN	0.44412	1	13394	13394		21.771	0	1	31713	+		10334	11109	6026	6147	8143	8143					-0.04924042480706703
IMFAASQARDL	11	Unmodified	_IMFAASQARDL_					0	0	0		ENST00000469110.1_1_10:49634394-49634652:+|nuORF	ENST00000469110.1_1_10:49634394-49634652:+|nuORF	ENST00000469110.1_1_10:49634394-49634652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.81607272375	2	611.816073	1221.61759	0.89628	0.00054836	-7.7447	-0.0047383	-6.8484	-0.00419	611.8117295323301	22.717	0.19291	22.704	22.607	22.8	-0.01354	1167	70	0.91857195	0.04222405	0.9170525	372.07358	0	17.103119						280	9	4	NaN	NaN	NaN	0.57257	1	16333	16333		15.822	4.0831	1	46852			10335	7135	6027	6148	8144	8144					0.015648421743435392
IMGEVRDGV	9	Unmodified	_IMGEVRDGV_					0	0	0		ENSG00000127578|ENST00000319070|WFIKKN1	ENSG00000127578|ENST00000319070|WFIKKN1	ENSG00000127578|ENST00000319070|WFIKKN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4927921754002	1	975.492792	974.485516	1.0957	0.0010688	4.9524	0.0048311	6.0481	0.0058999	975.4965413094459	33.383	0.12067	33.383	33.335	33.456	0	258	58	1.4660252	0.03377819	1.4660252	297.7555	0	6.8604736						140	6	2	NaN	NaN	NaN	0.18779	1	7737	7737		26.115	2.7805	1	19073			10336	2539	6028	6149	8145	8145					-0.0027476284259364547
IMGGDVVP	8	Unmodified	_IMGGDVVP_					0	0	0		nc|ENSG00000184730|Q0VD83-2|APOBR;nc|ENSG00000184730|Q0VD83-3|APOBR;ENSG00000184730|ENST00000564831|APOBR	nc|ENSG00000184730|Q0VD83-2|APOBR	nc|ENSG00000184730|Q0VD83-2|APOBR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.4018519031001	1	787.401852	786.394575	1.9569	0.0015409	8.0114	0.0063082	9.9683	0.007849	787.408102366617	52.739	0.095898	52.739	52.715	52.811	0	363	43	1.4036897	0.024983287	1.4036897	286.04385	0	5.091095						75	5	2	NaN	NaN	NaN	0.84455	1	4584	4584		2.7852	1.1148	1	4686.4			10337	5368	6029	6150	8146	8146					-0.007166068200717746
IMGKGGGA	8	Unmodified	_IMGKGGGA_					0	0	0			REV__ENST00000435550.5_1_19:9730249-9731897:-|nuORF	REV__ENST00000435550.5_1_19:9730249-9731897:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.0238	0.00070679	3.962	0.0027352	4.9858	0.003442	690.3632769908439	32.779	0.21714	32.776	32.727	32.945	-0.0031052	645	163	1.2351195	0.09751272	1.2336	252.29964	0	19.919067						635	10	3	NaN	NaN	NaN	0.84876	1	2936	2936		0.39566	0	1	61578	+		10338	12173	6030	6151	8147	8147					-0.004057427887460108
IMGKGGGA	8	Unmodified						0	0	0			REV__ENST00000435550.5_1_19:9730249-9731897:-|nuORF	REV__ENST00000435550.5_1_19:9730249-9731897:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	1.0238	0.00070679	3.962	0.0027352	4.9858	0.003442	690.3632769908439	32.779	0.21714	32.776	32.727	32.945	-0.0031052	645	163	1.2351195	0.09751272	1.2336	252.29964		19.919067	-0.0020824	7.9831E-05	-0.00075972	NaN	0.39566	635	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61578	+		10339	12173	6030	6151							-0.004057427887460108
IMIRSIFLF	9	Unmodified	_IMIRSIFLF_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3359127088501	2	570.335913	1138.65727	1.1689	0.00066666	-2.4965	-0.0014239	-1.3276	-0.0007572	570.33482036471	32.997	0.14481	32.997	32.949	33.094	0	1179	40	0.9112251	0.023881197	0.9112251	369.39795	0	9.681122						152	7	3	NaN	NaN	NaN	0.064504	1	14414	14414		40.957	14.842	1	19850			10340	3240;3983	6031	6152	8148	8148					0.09349013915721116
IMIRSIFLF	9	Unmodified	_IMIRSIFLF_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3359127088501	2	570.335913	1138.65727	0.70514	0.00040216	-1.9562	-0.0011157	-1.251	-0.00071351	570.3347759507633	33.092	0.21701	33.09	32.993	33.21	-0.0024757	1176	37	0.9130621	0.02204299	0.91154265	370.14264	0	8.935944						191	10	3	NaN	NaN	NaN	0.29341	1	13945	13945		19.336	3.8738	1	19310			10341	3240;3983	6031	6152	8149	8149					0.09349013915721116
IMKRRVHTHW	10	Unmodified	_IMKRRVHTHW_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.3800401743001	2	682.38004	1362.74553	1.9207	0.0013106	-6.0257	-0.0041118	-4.105	-0.0028012	682.8768044595921	20.405	0.12045	20.391	20.295	20.415	-0.014141	1065	31	0.9808926	0.018296003	0.97937316	396.8569	0	7.4023438						57	6	2	NaN	NaN	NaN	0.73444	1	18807	18807		5.6942	0.96509	1	4409.3			10342	5514	6032	6153	8150	8150					0.07866447278911437
IMKTHDQDI	9	Unmodified	_IMKTHDQDI_					0	0	0		ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.77387355805	2	550.773874	1099.53319	0.73969	0.0004074	-9.4294	-0.0051935	-8.6898	-0.0047861	551.2724243260909	33.094	0.24129	33.094	33.045	33.287	0	1245	70	0.87076044	0.04236573	0.87076044	353.1444	0	17.181763						219	11	2	NaN	NaN	NaN	0.27608	1	12824	12824		20.449	2.6497	1	31087			10343	6295	6033	6154	8151	8151					-0.012591086424208697
IMLFLSHWRR	10	Unmodified	_IMLFLSHWRR_					0	0	0		ENST00000477241.1_1_2:239037864-239040370:+|nuORF;nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.58865327723333	3	453.588653	1357.74413	1.4738	0.00066852	-5.7596	-0.0026125	-4.2857	-0.001944	453.92081731723584	23.103	0.072371	23.103	23.079	23.152	0	1380	55	0.7876915	0.033308625	0.7876915	478.04935	0	20.214966						149	4	4	NaN	NaN	NaN	0.71736	1	19648	19648		3.261	0	1	20534			10344	3477	6034	6155	8152	8152					0.07956813190139655
IMLKYFYL	8	Unmodified	_IMLKYFYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8039140887	2	545.803914	1089.59328	2.1163	0.0011551	-7.0005	-0.0038209	-4.8842	-0.0026658	545.7999039224063	25.78	0.16895	25.769	25.721	25.89	-0.0116	1215	58	0.8891654	0.034956157	0.88764596	360.64938	0	14.178375						121	8	2	NaN	NaN	NaN	0.80071	1	12079	12079		9.1232	0.87838	1	11278			10345	8058	6035	6156	8153	8153					0.052062337587585716
IMLKYFYL	8	Unmodified						0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.803914	1089.59328	1.8541	0.001012	-8.3945	-0.0045817	-6.5403	-0.0035697	546.3001879189122	25.805	0.07239	25.805	25.757	25.829	0	1224	61	0.883646	0.036821842	0.883646	358.4107		14.935089	0.018	-0.00093875	-0.002	NaN	9.1232	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8203.3			10346	8058	6035	6156							0.052062337587585716
IMNEAKAT	8	Unmodified	_IMNEAKAT_					0	0	0			REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4447793503001	1	877.444779	876.437503	1.8363	0.0016113	1.77	0.0015531	3.6063	0.0031643	877.4449137612111	37.142	0.048191	37.145	37.121	37.169	0.0022507	393	34	1.3858368	0.01965177	1.3843174	281.9076	0	3.9975586						45	3	2	NaN	NaN	NaN	0.69898	1	5626	5626		19.118	1.3193	1	2493.8	+		10347	10893	6036	6157	8154	8154					-0.005658367626438121
IMNYDEFQH	9	Unmodified	_IMNYDEFQH_					0	0	0		APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant;ENSG00000239713|ENST00000407997|APOBEC3G	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7556808049001	2	598.755681	1195.49681	1.687	0.0010101	-9.719	-0.0058193	-8.032	-0.0048092	598.7488169869667	21.874	0.31335	21.874	21.826	22.139	0	1197	112	0.9001988	0.06802839	0.9001988	364.72043	0	27.562073						707	14	4	NaN	NaN	NaN	0.39244	1	16318	16318		14.042	0.57854	1	109360			10348	39	6037	6158	8155	8155					-0.0931198553912509
IMPEKFEFW	9	Unmodified	_IMPEKFEFW_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.79936002705	2	613.79936	1225.58417	0.96647	0.00059322	3.9225	0.0024076	4.8889	0.0030008	613.8003469584983	28.677	0.14477	28.677	28.629	28.774	0	1194	106	0.902037	0.06426096	0.902037	365.36273	0	26.028381						219	7	3	NaN	NaN	NaN	0.19268	1	17121	17121		25.801	6.6826	1	26542			10349	4902	6038	6159	8156	8156					-0.019601595975473174
IMPEKFEFW	9	Unmodified	_IMPEKFEFW_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.79936002705	2	613.79936	1225.58417	0.62893	0.00038603	8.4165	0.0051661	9.0454	0.0055521	613.8069919144822	28.676	0.19301	28.668	28.572	28.765	-0.0083504	1194	109	0.902037	0.066093385	0.9005176	365.36273	0	26.7706						297	9	3	NaN	NaN	NaN	0.2961	1	16438	16438		19.164	3.9882	1	31876			10350	4902	6038	6159	8157	8157					-0.019601595975473174
IMPGPGKG	8	Unmodified	_IMPGPGKG_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.4072716320002	1	756.407272	755.399995	1.3912	0.0010523	8.0731	0.0061066	9.4643	0.0071589	756.4132630127457	24.381	0.19291	24.381	24.357	24.55	0	573	85	1.2783196	0.05036235	1.2783196	260.67923	0	10.270065						300	9	3	NaN	NaN	NaN	0.80071	1	4163	4163		9.1232	5.55	1	75574	+		10351	9668	6039	6160	8158	8158					0.012511167624097652
IMPGPGKG	8	Unmodified						0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.407272	755.399995	1.3912	0.0010523	8.0731	0.0061066	9.4643	0.0071589	756.4132630127457	24.381	0.19291	24.381	24.357	24.55	0	573	85	1.2783196	0.05036235	1.2783196	260.67923		10.270065	-0.0055665	-0.00022103	0.00075972	NaN	9.1232	300	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75574	+		10352	9668	6039	6160							0.012511167624097652
IMPTIFNLI	9	Oxidation (M)	_IM(Oxidation (M))PTIFNLI_		IM(1)PTIFNLI		IM(55)PTIFNLI	0	0	1		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.6012799923	1	1077.60128	1076.594	1.2269	0.0013221	-6.8145	-0.0073433	-5.5876	-0.0060212	1077.5934057139764	36.133	0.07238	36.133	36.133	36.205	0	102	73	1.5582114	0.04241681	1.5582114	316.0601	0	8.603638						114	4	2	NaN	NaN	NaN	0.032826	1	11840	11840		55.413	11.111	1	11631			10353	819	6040	6161	8159	8159		84			0.05877028407826401
IMRLTFCWP	9	Unmodified	_IMRLTFCWP_					0	0	0		OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.5331571182667	3	389.533157	1165.57764	1.2165	0.00047387	7.052	0.002747	8.2685	0.0032208	389.87004850043064	20.766	0.048216	20.766	20.742	20.79	0	1440	31	0.7506418	0.018544972	0.7506418	456.31876	0	11.27356						45	3	2	NaN	NaN	NaN	0.66529	1	15322	15322		1.04	0.40831	1	3948.5			10354	8080	6041	6162	8160	8160					0.0014762397006506944
IMRLTFCWP	9	Unmodified						0	0	0		OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	OR13G1|p.G167W|1|0.16|ENSG00000197437|chr1:247672543-247672543|C/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	389.533157	1165.57764	2.6565	0.0010348	11.778	0.0045881	14.435	0.0056229	389.53825633846606	20.959	0.024021	20.945	20.921	20.945	-0.014088	1440	25	0.7506418	0.014834344	0.7491224	456.31876		9.017883	0.089421	0.002856	-0.00075972	NaN	1.04	25	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452.5			10355	8080	6041	6162							0.0014762397006506944
IMSSVTLLW	9	Unmodified	_IMSSVTLLW_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5699798639	1	1049.56998	1048.5627	1.3385	0.0014049	-2.8874	-0.0030306	-1.5489	-0.0016257	1049.5680088823847	33.697	0.12067	33.697	33.648	33.769	0	174	40	1.5157272	0.023040414	1.5157272	307.54675	0	4.674988						84	6	2	NaN	NaN	NaN	0.27442	1	10580	10580		20.555	1.3919	1	7475.1			10356	941	6042	6163	8161	8161					0.04036455373739045
IMVEDELAL	9	Unmodified	_IMVEDELAL_					0	0	0		ENST00000472216.2_1_2:169741394-169769722:-|nuORF	ENST00000472216.2_1_2:169741394-169769722:-|nuORF	ENST00000472216.2_1_2:169741394-169769722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.76772554765	2	516.767726	1031.5209	1.585	0.0008191	6.171	0.003189	7.756	0.0040081	516.7712817422149	27.35	0.096579	27.35	27.302	27.398	0	1281	43	0.84864825	0.025814295	0.84864825	344.45728	0	10.477753						82	5	2	NaN	NaN	NaN	0.31737	1	9848	9848		17.799	3.374	1	9621.3			10357	7161	6043	6164	8162	8162					0.006398548945298899
IMVEDELAL	9	Unmodified	_IMVEDELAL_					0	0	0		ENST00000472216.2_1_2:169741394-169769722:-|nuORF	ENST00000472216.2_1_2:169741394-169769722:-|nuORF	ENST00000472216.2_1_2:169741394-169769722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.76772554765	2	516.767726	1031.5209	1.1333	0.00058564	5.5644	0.0028755	6.6977	0.0034612	516.7707122970924	27.349	0.072405	27.339	27.315	27.387	-0.010126	1278	49	0.85049206	0.029505253	0.8489726	345.20566	0	11.975861						75	4	2	NaN	NaN	NaN	0.31737	1	9635	9635		17.799	3.7574	1	8611.8			10358	7161	6043	6164	8163	8163					0.006398548945298899
IMVHSPTK	8	Unmodified	_IMVHSPTK_					0	0	0		MYSM1|p.S234Pfs*13|1|0.07|ENSG00000162601|chr1:58682345-58682346|-/ACAGAGCAATGGT|frameshift_variant;ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1	MYSM1|p.S234Pfs*13|1|0.07|ENSG00000162601|chr1:58682345-58682346|-/ACAGAGCAATGGT|frameshift_variant	MYSM1|p.S234Pfs*13|1|0.07|ENSG00000162601|chr1:58682345-58682346|-/ACAGAGCAATGGT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4971492718	1	912.497149	911.489873	1.5886	0.0014496	-7.5479	-0.0068874	-5.9593	-0.0054379	912.4895332071454	35.022	0.12063	35.022	34.926	35.046	-4.5776E-05	336	88	1.419741	0.051720977	1.4182216	288.63278	0	10.514832						103	6	2	NaN	NaN	NaN	0.82797	1	6132	6132		5.4659	0	1	8086			10359	4151	6044	6165	8164	8164					0.030587463709593976
INAEDEPVL	9	Unmodified	_INAEDEPVL_					0	0	0			REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.25329690395	2	500.253297	998.492041	1.9084	0.0009547	2.6083	0.0013048	4.5167	0.0022595	500.25432737815885	17.381	0.11993	17.381	17.333	17.453	0	1323	58	0.8228144	0.035084903	0.8228144	334.11707	0	14.246796						184	6	3	NaN	NaN	NaN	0.13602	1	8521	8521		30.61	0.57471	1	25587	+		10360	11127	6045	6166	8165	8165					-0.007265464102374608
INAEDEPVL	9	Unmodified						0	0	0			REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.253297	998.492041	1.9084	0.0009547	2.6083	0.0013048	4.5167	0.0022595	500.25432737815885	17.381	0.11993	17.381	17.333	17.453	0	1323	58	0.8228144	0.035084903	0.8228144	334.11707		14.246796	0.0084491	-0.00018139	0.00075972	NaN	30.61	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25587	+		10361	11127	6045	6166							-0.007265464102374608
INCKSAEWE	9	Unmodified	_INCKSAEWE_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.49905811759993	3	360.499058	1078.47534	1.809	0.00065213	6.6191	0.0023862	8.428	0.0030383	360.50145174893134	20.044	0.24075	20.03	19.958	20.198	-0.014141	1515	49	0.7042165	0.029752553	0.70269704	428.5	0	18.10376						261	11	3	NaN	NaN	NaN	0.41766	1	11595	11595		8.2775	0	1	50467	+		10362	8549	6046	6167	8166	8166					-0.060753705678507686
INEASGSRTI	10	Unmodified	_INEASGSRTI_					0	0	0		nc|ENSG00000138030|P50053-2|KHK	nc|ENSG00000138030|P50053-2|KHK	nc|ENSG00000138030|P50053-2|KHK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5429134905	1	1047.54291	1046.53564	1.2714	0.0013319	5.4796	0.0057401	6.751	0.007072	1047.5485374571567	30.727	0.14476	30.722	30.722	30.866	-0.0057545	141	88	1.5352125	0.051332474	1.5336931	311.5082	0	10.415802						115	7	2	NaN	NaN	NaN	0.507	1	10282	10282		19.164	1.1939	1	16176			10363	7945	6047	6168	8167	8167					0.01423063086917864
INEEEEQSLL	10	Unmodified	_INEEEEQSLL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2906076570001	2	602.290608	1202.56666	1.5669	0.00094376	-4.4489	-0.0026795	-2.8819	-0.0017358	602.7879285405751	23.465	0.048252	23.465	23.441	23.489	0	1200	61	0.89836043	0.036758184	0.89836043	363.95114	0	14.891785						108	3	3	NaN	NaN	NaN	0.5917	1	16543	16543		15.463	0	1	14407	+		10364	10671	6048	6169	8168	8168					-0.026518283895029526
INEEEEQSLL	10	Unmodified						0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.290608	1202.56666	1.5669	0.00094376	-4.4489	-0.0026795	-2.8819	-0.0017358	602.7879285405751	23.465	0.048252	23.465	23.441	23.489	0	1200	61	0.89836043	0.036758184	0.89836043	363.95114		14.891785	-0.13792	-0.00089896	-0.0065911	NaN	15.463	108	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14407	+		10365	10671	6048	6169							-0.026518283895029526
INEEEEQSLL	10	Unmodified						0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.290608	1202.56666	1.716	0.0010335	-3.3795	-0.0020355	-1.6636	-0.001002	602.2890809300418	23.754	0.024052	23.741	23.741	23.765	-0.013048	1176	52	0.9130621	0.031222522	0.91154265	369.9072		12.649139	0.13792	0.00038913	0.0065911	NaN	15.463	45	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4745.4	+		10366	10671	6048	6169							-0.026518283895029526
INELKPGNLL	10	Unmodified	_INELKPGNLL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.8295060625001	2	555.829506	1109.64446	1.5423	0.00085725	0.98501	0.0005475	2.5273	0.0014048	555.8302570114994	26.456	0.096546	26.456	26.408	26.505	0	1212	40	0.8910048	0.023912191	0.8910048	361.31387	0	9.696686						79	5	3	NaN	NaN	NaN	0.71559	1	13280	13280		6.9844	1.7955	1	8086			10367	2445	6049	6170	8169	8169					0.09402274057174509
INELKPGNLL	10	Unmodified						0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.829506	1109.64446	1.5402	0.00085609	-1.7336	-0.0009636	-0.19343	-0.00010751	555.8292064519632	26.48	0.072378	26.47	26.446	26.518	-0.010645	1212	43	0.8910048	0.025755763	0.88948536	361.31387		10.444305	0.0065958	-0.0019514	-0.00075972	NaN	6.9844	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7398.8			10368	2445	6049	6170							0.09402274057174509
INELSHVQI	9	Unmodified	_INELSHVQI_					0	0	0		ENSG00000150867|ENST00000376573|PIP4K2A	ENSG00000150867|ENST00000376573|PIP4K2A	ENSG00000150867|ENST00000376573|PIP4K2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.790380902	2	526.790381	1051.56621	0.90727	0.00047794	0.1442	7.5962E-05	1.0515	0.0005539	526.7901159855883	30.825	0.048256	30.825	30.825	30.873	0	1233	43	0.87812483	0.025772452	0.87812483	356.33203	0	10.45813						60	3	2	NaN	NaN	NaN	0.54912	1	10697	10697		7.5876	1.3374	1	8077.6			10369	3716	6050	6171	8170	8170					0.04248841471940068
INELSHVQI	9	Unmodified	_INELSHVQI_					0	0	0		ENSG00000150867|ENST00000376573|PIP4K2A	ENSG00000150867|ENST00000376573|PIP4K2A	ENSG00000150867|ENST00000376573|PIP4K2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.790380902	2	526.790381	1051.56621	0.94964	0.00050026	2.3379	0.0012316	3.2876	0.0017319	526.7917531774026	30.777	0.072401	30.777	30.704	30.777	0	1230	46	0.8799654	0.027611852	0.8799654	357.07892	0	11.204559						82	4	2	NaN	NaN	NaN	0.54912	1	10700	10700		7.5876	1.3374	1	13072			10370	3716	6050	6171	8171	8171					0.04248841471940068
INENSGMSLL	10	Unmodified	_INENSGMSLL_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2658813504502	2	539.265881	1076.51721	1.9336	0.0010427	0.85095	0.00045889	2.7846	0.0015016	539.2661939349275	29.57	0.48269	29.57	29.474	29.956	0	1287	115	0.8449601	0.07000691	0.8449601	342.77148	0	28.399384						1027	21	3	NaN	NaN	NaN	0.5917	1	11820	11820		15.463	0.28729	1	177830	+		10371	10944	6051	6172	8172	8172					-0.017988148792937864
INENSGMSLL	10	Unmodified	_INENSGMSLL_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2658813504502	2	539.265881	1076.51721	1.2529	0.00067563	1.9399	0.0010461	3.1928	0.0017218	539.266983673367	29.593	0.31365	29.586	29.514	29.828	-0.0070667	1248	115	0.8689189	0.06999928	0.86739945	352.49072	0	28.396332						904	14	3	NaN	NaN	NaN	0.5917	1	11506	11506		15.463	2.893	1	169350	+		10372	10944	6051	6172	8173	8173					-0.017988148792937864
INENSGMSLL	10	Unmodified						0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.265881	1076.51721	1.9336	0.0010427	0.85095	0.00045889	2.7846	0.0015016	539.2661939349275	29.57	0.48269	29.57	29.474	29.956	0	1287	115	0.8449601	0.07000691	0.8449601	342.77148		28.399384	-0.0081247	-0.00063571	-0.01122	NaN	15.463	1027	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177830	+		10373	10944	6051	6172							-0.017988148792937864
INENSGMSLL	10	Unmodified						0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.265881	1076.51721	1.2529	0.00067563	1.9399	0.0010461	3.1928	0.0017218	539.266983673367	29.593	0.31365	29.586	29.514	29.828	-0.0070667	1248	115	0.8689189	0.06999928	0.86739945	352.49072		28.396332	0.0081247	0.00053877	0.01122	NaN	15.463	904	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169350	+		10374	10944	6051	6172							-0.017988148792937864
INGCEECTFPK	11	Unmodified	_INGCEECTFPK_					0	0	0			REV__ENSG00000186777|ENST00000419098|ZNF732	REV__ENSG00000186777|ENST00000419098|ZNF732	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.1827412150999	3	414.182741	1239.52639	1.3607	0.00056356	-0.97468	-0.0004037	0.38597	0.00015986	414.18233150271953	32.996	0.072407	32.993	32.945	33.018	-0.0024757	1452	28	0.74322224	0.016696751	0.7417028	451.49356	0	10.142975						61	4	2	NaN	NaN	NaN	0.75376	1	16769	16769		1.5256	0	1	3974.2	+		10375	11007	6052	6173	8174	8174					-0.0837878958532201
INKEQCKVSL	10	Unmodified	_INKEQCKVSL_					0	0	0			REV__SLITRK4|p.N360K|1|0.53|ENSG00000179542|chrX:143630029-143630029|G/T|missense_variant	REV__SLITRK4|p.N360K|1|0.53|ENSG00000179542|chrX:143630029-143630029|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.8813909803333	3	387.881391	1160.62234	1.5796	0.0006127	-3.2149	-0.001247	-1.6353	-0.00063429	387.8803291323933	14.117	0.071879	14.106	14.082	14.154	-0.010672	1485	79	0.72280174	0.048311174	0.7212823	439.41663	0	29.370056						90	4	2	NaN	NaN	NaN	0.72369	1	14666	14666		3.3044	0	1	6983.3	+		10376	13322	6053	6174	8175	8175					0.04845726317103072
INLADSHDR	9	Unmodified	_INLADSHDR_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5119477131	1	1040.51195	1039.50467	1.7829	0.0018552	-4.704	-0.0048946	-2.921	-0.0030394	1040.5072747057206	25.346	0.12062	25.346	25.298	25.419	0	204	85	1.4979934	0.049685955	1.4979934	303.9829	0	10.082642						130	6	2	NaN	NaN	NaN	0.2345	1	10183	10183		23.118	1.2826	1	14191			10377	5616	6054	6175	8176	8176					-0.013500902273335669
INLSLINPD	9	Unmodified	_INLSLINPD_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5516872628	1	998.551687	997.544411	2.0497	0.0020467	-1.3968	-0.0013948	0.65287	0.00065193	998.5499908511445	27.953	0.12062	27.953	27.929	28.05	0	210	91	1.4944444	0.053263307	1.4944444	303.42972	0	10.814514						254	6	3	NaN	NaN	NaN	0.49672	1	8489	8489		9.746	0.78402	1	39302	+		10378	9481	6055	6176	8177	8177					0.045540367233684265
INLSLINPD	9	Unmodified						0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	998.551687	997.544411	2.0497	0.0020467	-1.3968	-0.0013948	0.65287	0.00065193	998.5499908511445	27.953	0.12062	27.953	27.929	28.05	0	210	91	1.4944444	0.053263307	1.4944444	303.42972		10.814514	-0.007194	-0.00026005	-0.00012758	NaN	9.746	254	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39302	+		10379	9481	6055	6176							0.045540367233684265
INLSLINPD	9	Unmodified						0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.551687	997.544411	1.2939	0.001292	-0.87894	-0.00087767	0.41492	0.00041432	998.5514756290681	27.977	0.12067	27.968	27.943	28.064	-0.0089798	207	85	1.496219	0.049707174	1.4946996	303.79004		10.092468	0.007194	0.00025705	0.00012758	NaN	9.746	228	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34902	+		10380	9481	6055	6176							0.045540367233684265
INNLGVTAG	9	Unmodified	_INNLGVTAG_					0	0	0			REV__nc|ENSG00000048740|O95319-5|CELF2	REV__nc|ENSG00000048740|O95319-5|CELF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4679576334	1	858.467958	857.460681	1.9115	0.0016409	-3.6802	-0.0031594	-1.7688	-0.0015184	858.4651108049125	25.829	0.21721	25.817	25.672	25.89	-0.011602	420	49	1.3697531	0.02860403	1.3682337	278.7311	0	5.820648						196	10	2	NaN	NaN	NaN	0.55027	1	5368	5368		7.5404	1.45	1	18498	+		10381	8483	6056	6177	8178	8178					0.026249253463333844
INNLPSML	8	Unmodified	_INNLPSML_					0	0	0		tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.24422066159997	2	451.244221	900.473888	1.4355	0.00064774	-1.6576	-0.000748	-0.22219	-0.00010026	451.2438010656552	17.621	0.0959	17.621	17.597	17.693	0	1389	31	0.7821392	0.018508792	0.7821392	318.06964	0	7.5269165						66	5	2	NaN	NaN	NaN	0.75561	1	6090	6090		15.175	1.1338	1	6058.6			10382	13923	6057	6178	8179	8179					0.019670401340590615
INNRGDVSI	9	Unmodified	_INNRGDVSI_					0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5217841179002	1	987.521784	986.514508	1.5587	0.0015393	-7.7691	-0.0076721	-6.2104	-0.0061329	987.5141851381751	36.95	0.26448	36.952	36.88	37.145	0.0022507	240	142	1.4766881	0.08353007	1.4751687	299.87024	0	16.962433						544	12	4	NaN	NaN	NaN	0.030669	1	7933	7933		58.235	16.451	1	98380	+		10383	13580	6058	6179	8180	8180					0.020710977780595385
INNRGDVSI	9	Unmodified						0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	987.521784	986.514508	1.913	0.0018891	-7.7499	-0.0076532	-5.837	-0.0057641	987.5141727660233	36.952	0.2165	36.952	36.88	37.097	0	243	157	1.4749115	0.09246051	1.4749115	299.50943		18.77591	-1.7975E-05	1.0529E-05	-0.00012861	NaN	58.235	563	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107280	+		10384	13580	6058	6179							0.020710977780595385
INNRGDVSI	9	Unmodified						0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	987.521784	986.514508	1.5587	0.0015393	-7.7691	-0.0076721	-6.2104	-0.0061329	987.5141851381751	36.95	0.26448	36.952	36.88	37.145	0.0022507	240	142	1.4766881	0.08353007	1.4751687	299.87024		16.962433	1.7975E-05	-8.3711E-06	0.00012861	NaN	58.235	544	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98380	+		10385	13580	6058	6179							0.020710977780595385
INPQKDEAL	9	Unmodified	_INPQKDEAL_					0	0	0		ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000115073|ENST00000289228|ACTR1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.5418508579999	1	1027.54185	1026.53457	1.3049	0.0013408	8.1123	0.0083358	9.4172	0.0096766	1027.5566977896237	29.762	0.31367	29.755	29.562	29.876	-0.0070667	201	100	1.4997677	0.05852437	1.4982482	304.39325	0	11.878113						781	14	4	NaN	NaN	NaN	0.2961	1	9442	9442		19.164	1.3646	1	107020			10386	1987	6059	6180	8181	8181					0.022368487179846852
INPVAQPE	8	Unmodified	_INPVAQPE_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.4570585961001	1	867.457059	866.449782	2.1621	0.0018755	-2.158	-0.001872	0.0040699	3.5305E-06	867.4553072456351	26.119	0.12069	26.119	26.07	26.191	0	432	85	1.3625998	0.05009985	1.3625998	277.23007	0	10.193146						201	6	3	NaN	NaN	NaN	0.43738	1	5621	5621		34.439	4.8405	1	21340	+		10387	11423	6060	6181	8182	8182					0.011215229720505704
INRELLSV	8	Unmodified	_INRELLSV_					0	0	0			REV__ENST00000515057.1_1_4:141865852-141889013:-|nuORF	REV__ENST00000515057.1_1_4:141865852-141889013:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.5571069917003	1	943.557107	942.549831	1.7787	0.0016783	-11.622	-0.010966	-9.843	-0.0092874	943.5465208340648	27.302	0.24136	27.302	27.253	27.495	0	288	169	1.4482387	0.09978473	1.4482387	294.28198	0	20.276245						772	11	5	NaN	NaN	NaN	0.202	1	6890	6890		49.833	2.3514	1	329290	+		10388	10573	6061	6182	8183	8183					0.07625760305870699
INRFFVRRK	9	Unmodified	_INRFFVRRK_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3778234488501	2	618.377823	1234.74109	-0.74965	-0.00046356	5.7299	0.0035432	4.9803	0.0030797	618.3817080103042	47.466	0.14372	47.474	47.426	47.57	0.0074158	1239	43	0.87444305	0.025772452	0.8729236	354.15677	0	10.43808						145	7	3	NaN	NaN	NaN	0.68801	1	16677	16677		0.23014	0	1	10342	+		10389	9704	6062	6183	8184	8184					0.13311306127639
INRFFVRRK	9	Unmodified						0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.377823	1234.74109	-0.74965	-0.00046356	5.7299	0.0035432	4.9803	0.0030797	618.3817080103042	47.466	0.14372	47.474	47.426	47.57	0.0074158	1239	43	0.87444305	0.025772452	0.8729236	354.15677		10.43808	-0.020948	0.00062443	-0.00075972	NaN	0.23014	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10342	+		10390	9704	6062	6183							0.13311306127639
INSGHSDAAT	10	Unmodified	_INSGHSDAAT_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.7226952672999	2	486.722695	971.430838	2.1522	0.0010475	-6.424	-0.0031267	-4.2718	-0.0020792	486.7196086240104	25.588	0.072344	25.588	25.564	25.636	0	1368	37	0.7950918	0.022196114	0.7950918	322.9821	0	9.0164795						78	4	3	NaN	NaN	NaN	0.62092	1	7642	7642		13.463	2.8581	1	6628.2			10391	2015	6063	6184	8185	8185					-0.05602058389672493
INSPNPNI	8	Unmodified	_INSPNPNI_					0	0	0		tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	tr|U7SXN7|U7SXN7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00907PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4523075692001	1	868.452308	867.445031	1.833	0.0015919	4.842	0.0042051	6.6751	0.005797	868.456571141327	26.118	0.12065	26.107	26.083	26.204	-0.011137	432	115	1.3625998	0.06792033	1.3610804	277.22507	0	13.818573						144	6	2	NaN	NaN	NaN	0.3042	1	5489	5489		41.785	7.3457	1	10946			10392	13914	6064	6185	8186	8186					0.006006388292917109
INSQNTTYLYA	11	Unmodified	_INSQNTTYLYA_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.87870355840005	3	429.878704	1286.61428	1.7961	0.0007721	7.0555	0.003033	8.8516	0.0038051	429.88289887279143	11.524	0.28812	11.524	11.38	11.668	0	1449	49	0.74507743	0.029684842	0.74507743	452.4383	0	18.025696						171	13	2	NaN	NaN	NaN	0.72342	1	18542	18542		2.5605	0	1	16098			10393	5437	6065	6186	8187	8187					-0.017561293986545934
INSWWIFFK	9	Unmodified	_INSWWIFFK_					0	0	0		ENST00000484303.5_1_2:144966272-144966320:-|nuORF	ENST00000484303.5_1_2:144966272-144966320:-|nuORF	ENST00000484303.5_1_2:144966272-144966320:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.2219648870333	3	414.221965	1239.64407	1.907	0.00078993	-3.9421	-0.0016329	-2.035	-0.00084296	414.22035153415675	25.829	0.12064	25.829	25.781	25.901	0	1389	43	0.7821392	0.025912344	0.7821392	475.1344	0	15.741241						128	6	3	NaN	NaN	NaN	0.42817	1	17522	17522		8.3538	3.1876	1	12007			10394	7229	6066	6187	8188	8188					0.033828991279960974
INVHAGAG	8	Unmodified	_INVHAGAG_					0	0	0			REV__sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	REV__sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3893133819001	1	738.389313	737.382037	1.5934	0.0011766	-5.5332	-0.0040857	-3.9398	-0.0029091	738.3858912025406	25.153	0.0965	25.153	25.129	25.226	0	597	43	1.2639319	0.02518928	1.2639319	257.85757	0	5.1389313						86	5	2	NaN	NaN	NaN	0.79379	1	3878	3878		10.052	6.4783	1	7186.6	+		10395	13333	6067	6188	8189	8189					0.002841178319044957
INYYTSEPC	9	Unmodified	_INYYTSEPC_					0	0	0		ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.23150721685	2	545.231507	1088.44846	1.6889	0.00092085	5.7978	0.0031611	7.4867	0.004082	545.2347719975855	22.814	0.12062	22.814	22.79	22.911	0	1260	49	0.8615505	0.029476583	0.8615505	349.45322	0	11.955963						85	6	2	NaN	NaN	NaN	0.58159	1	12298	12298		6.2502	0.55606	1	10224			10396	4078	6068	6189	8190	8190					-0.09222479179038601
IPAAVFSVL	9	Unmodified	_IPAAVFSVL_					0	0	0		ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.5502306998002	1	916.550231	915.542954	1.2787	0.0011719	-2.7146	-0.0024881	-1.436	-0.0013162	916.5470526583589	32.828	0.072376	32.828	32.804	32.876	0	336	49	1.419741	0.028515935	1.419741	288.61374	0	5.796875						82	4	2	NaN	NaN	NaN	0.098515	1	6343	6343		36.036	9.3048	1	7110.2			10397	2959	6069	6190	8191	8191					0.08180447425286275
IPADIVFVL	9	Unmodified	_IPADIVFVL_					0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5920955145001	1	986.592096	985.584819	2.3078	0.0022768	-0.53499	-0.00052782	1.7728	0.001749	986.5922512411663	36.036	0.33766	36.036	35.964	36.302	0	201	193	1.4997677	0.113688946	1.4997677	304.5609	0	23.087036						1237	15	5	NaN	NaN	NaN	0.014943	1	8081	8081		78.398	31.358	1	681820			10398	3068	6070	6191	8192	8192					0.09145003113803796
IPADIVFVL	9	Unmodified	_IPADIVFVL_					0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5920955145001	1	986.592096	985.584819	2.2325	0.0022026	-0.39092	-0.00038568	1.8416	0.0018169	986.5922091419768	36.035	0.24111	36.036	35.964	36.205	0.0011024	201	193	1.4997677	0.113688946	1.4982482	304.5609	0	23.087036						1152	11	5	NaN	NaN	NaN	0.02781	1	7911	7911		61.977	17.674	1	673350			10399	3068	6070	6191	8193	8193					0.09145003113803796
IPADIVFVL	9	Unmodified						0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	986.592096	985.584819	1.9115	0.0018859	-0.20765	-0.00020486	1.7039	0.0016811	986.5916212541473	36.252	0.096317	36.253	36.253	36.349	0.0011024	198	55	1.5015416	0.03193426	1.5000222	304.92114		6.484955	0.10827	0.00028528	0.0001273	NaN	78.398	131	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9987.6			10400	3068	6070	6191							0.09145003113803796
IPAEADFLL	9	Unmodified	_IPAEADFLL_					0	0	0		nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5349745661	1	988.534975	987.527698	1.5781	0.00156	-0.97326	-0.0009621	0.60486	0.00059792	988.5338695751216	31.597	0.28965	31.597	31.477	31.766	0	231	94	1.4820169	0.055070877	1.4820169	300.94806	0	11.183075						484	13	3	NaN	NaN	NaN	0.018156	1	8131	8131		74.332	35.414	1	119000			10401	301	6071	6192	8194	8194					0.033435358374163116
IPAEADFLL	9	Unmodified	_IPAEADFLL_					0	0	0		nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	nc|ENSG00000003400|Q92851-6|CASP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5349745661	1	988.534975	987.527698	1.1228	0.0011099	0.008326	8.2305E-06	1.1311	0.0011181	988.535406357464	31.572	0.21721	31.568	31.495	31.712	-0.0044155	231	97	1.4820169	0.056808114	1.4804975	300.94806	0	11.535858						560	10	4	NaN	NaN	NaN	0.0081087	1	7968	7968		96.245	49.205	1	127890			10402	301	6071	6192	8195	8195					0.033435358374163116
IPAEDVPLL	9	Unmodified	_IPAEDVPLL_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5506246303001	1	966.550625	965.543348	1.7405	0.0016823	-0.49675	-0.00048014	1.2438	0.0012022	966.5497041979675	29.256	0.24132	29.256	29.16	29.401	0	267	109	1.4606913	0.06403828	1.4606913	296.71048	0	13.008087						546	11	4	NaN	NaN	NaN	0.030391	1	7508	7508		58.599	22.563	1	136430			10403	3643	6072	6193	8196	8196					0.059198223544854045
IPAEDVPLL	9	Unmodified	_IPAEDVPLL_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5506246303001	1	966.550625	965.543348	1.2586	0.0012165	-0.27174	-0.00026265	0.98688	0.00095387	966.5503184852171	29.256	0.21721	29.248	29.175	29.393	-0.0077229	264	124	1.4624695	0.0729053	1.46095	297.0717	0	14.809265						554	10	4	NaN	NaN	NaN	0.014943	1	7360	7360		78.398	44.7	1	136630			10404	3643	6072	6193	8197	8197					0.059198223544854045
IPAEEENKL	9	Unmodified	_IPAEEENKL_					0	0	0		ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7743964868	2	521.774396	1041.53424	1.5885	0.00082881	-4.4502	-0.002322	-2.8617	-0.0014932	521.7736463695512	15.534	0.09604	15.534	15.534	15.63	0	1305	49	0.83389086	0.029521227	0.83389086	338.4246	0	11.980835						80	5	2	NaN	NaN	NaN	0.23499	1	10274	10274		23.086	3.7494	1	6329.4			10405	368	6073	6194	8198	8198					0.015134289981460824
IPAEEENKL	9	Unmodified	_IPAEEENKL_					0	0	0		ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7743964868	2	521.774396	1041.53424	1.6385	0.00085493	-1.3193	-0.00068837	0.31922	0.00016656	521.773444612739	15.484	0.21582	15.472	15.4	15.616	-0.012201	1305	61	0.83389086	0.03689754	0.8323714	338.4246	0	14.974426						181	10	2	NaN	NaN	NaN	0.29341	1	10070	10070		19.336	1.3667	1	23419			10406	368	6073	6194	8199	8199					0.015134289981460824
IPAGETSL	8	Unmodified	_IPAGETSL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.4196104573001	1	787.41961	786.412334	1.8783	0.001479	-0.090388	-7.1173E-05	1.7879	0.0014079	787.419642266477	18.986	0.16813	18.972	18.924	19.092	-0.014059	567	40	1.2819146	0.023363829	1.2803952	261.22845	0	4.761078						114	8	2	NaN	NaN	NaN	0.19946	1	4495	4495		50.033	13.996	1	9612.7			10407	3520	6074	6195	8200	8200					0.010584317064399329
IPAGGGCG	8	Unmodified	_IPAGGGCG_					0	0	0			REV__ENST00000403150.5_1_7:1577170-1577704:+|nuORF	REV__ENST00000403150.5_1_7:1577170-1577704:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.14704930595	2	316.147049	630.279546	1.4879	0.00047038	-3.0702	-0.00097062	-1.5823	-0.00050024	316.1461678599342	37.504	0.1686	37.506	37.434	37.603	0.0028229	1524	100	0.698637	0.061354637	0.69711757	285.9338	0	25.11087						370	8	3	NaN	NaN	NaN	0.84651	1	1377	1377		1.6704	1.2747	1	63796	+		10408	12043	6075	6196	8201	8201					-0.050382912312102235
IPAICDMPT	9	Unmodified	_IPAICDMPT_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.4529011956	1	960.452901	959.445625	1.5418	0.0014809	-6.6887	-0.0064242	-5.1468	-0.0049433	960.4471861934733	28.845	0.12069	28.837	28.813	28.933	-0.0083504	291	49	1.446459	0.028476596	1.4449396	293.8458	0	5.7849426						102	6	2	NaN	NaN	NaN	0.47587	1	7168	7168		10.605	2.3147	1	6245.1			10409	3151	6076	6197	8202	8202					-0.0357202583753633
IPAITVVLV	9	Unmodified	_IPAITVVLV_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.6128309566002	1	924.612831	923.605554	1.5224	0.0014076	-0.38495	-0.00035593	1.1374	0.0010517	924.6122016191783	32.659	0.096519	32.659	32.635	32.732	0	309	76	1.435777	0.044530153	1.435777	291.83588	0	9.051178						200	5	3	NaN	NaN	NaN	0.20577	1	6486	6486		24.961	0	1	26496	+		10410	9975	6077	6198	8203	8203					0.14069593493479715
IPALAVEM	8	Unmodified	_IPALAVEM_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4644521599001	1	843.464452	842.457176	1.6978	0.001432	1.2782	0.0010781	2.976	0.0025101	843.4663313251452	27.736	0.048288	27.736	27.712	27.76	0	435	43	1.360811	0.025047183	1.360811	276.9893	0	5.098297						63	3	2	NaN	NaN	NaN	0.69631	1	5301	5301		19.285	4.2718	1	3946.2			10411	3436	6078	6199	8204	8204					0.029645392481143062
IPALAVEM	8	Unmodified	_IPALAVEM_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.4644521599001	1	843.464452	842.457176	1.2871	0.0010856	0.5015	0.00042299	1.7886	0.0015086	843.4637306999841	27.735	0.048267	27.726	27.702	27.75	-0.009552	438	49	1.359022	0.028628469	1.3575026	276.62515	0	5.82724						61	3	2	NaN	NaN	NaN	0.50567	1	5170	5170		30.791	5.0393	1	4163.6			10412	3436	6078	6199	8205	8205					0.029645392481143062
IPALDLLI	8	Unmodified	_IPALDLLI_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.5549817267002	1	867.554982	866.547705	1.1841	0.0010273	-0.38742	-0.00033611	0.79666	0.00069114	867.5543541286665	33.89	0.19303	33.89	33.842	34.035	0	327	145	1.425088	0.08563888	1.425088	289.9432	0	17.423798						679	9	4	NaN	NaN	NaN	0.044274	1	5624	5624		81.001	0	1	135400			10413	6112	6079	6200	8206	8206					0.10909331568052494
IPALDNFL	8	Unmodified	_IPALDNFL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4981951293001	1	902.498195	901.490919	1.2246	0.0011052	3.3254	0.0030011	4.55	0.0041063	902.4989083760329	32.2	0.072353	32.196	32.148	32.22	-0.0037613	318	55	1.4304334	0.03207016	1.428914	290.85446	0	6.520935						100	4	2	NaN	NaN	NaN	0.47456	1	5988	5988		32.453	2.8544	1	10816			10414	4557	6080	6201	8207	8207					0.03623284011530359
IPAPAEKTPV	10	Unmodified	_IPAPAEKTPV_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.79767461785	2	511.797675	1021.5808	1.7446	0.00089289	-0.69094	-0.00035362	1.0537	0.00053927	511.79745086241013	16.706	0.04788	16.693	16.669	16.717	-0.013294	1320	73	0.824661	0.044296205	0.8231416	334.764	0	17.981659						89	3	3	NaN	NaN	NaN	0.52943	1	9253	9253		18.233	3.3795	1	6564.6			10415	2426	6081	6202	8208	8208					0.07086913620094037
IPASELVM	8	Oxidation (M)	_IPASELVM(Oxidation (M))_		IPASELVM(1)		IPASELVM(83)	0	0	1		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.4542814041001	1	875.454281	874.447005	0.73584	0.0006442	0.82748	0.00072442	1.5633	0.0013686	875.4555579340404	20.791	0.14444	20.776	20.728	20.873	-0.014086	417	91	1.3715409	0.05366695	1.3700215	279.00934	0	10.917358						253	7	3	NaN	NaN	NaN	0.040055	1	5598	5598		82.858	10.865	1	26786			10416	3393	6082	6203	8209	8209		376			0.004759315228852756
IPASEQETL	9	Unmodified	_IPASEQETL_					0	0	0		nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-6|MDM2;nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-7|MDM2	nc|ENSG00000135679|Q00987-7|MDM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.4993173413001	1	987.499317	986.492041	2.6705	0.0026371	-0.14301	-0.00014122	2.5275	0.0024959	987.4991041055573	18.556	0.11993	18.556	18.484	18.604	0	282	55	1.4517976	0.032036066	1.4517976	294.8158	0	6.505554						119	6	2	NaN	NaN	NaN	0.017558	1	8098	8098		75.089	35.63	1	9149.8			10417	2954	6083	6204	8210	8210					-0.0017454641023277873
IPASEQETL	9	Unmodified						0	0	0		nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-6|MDM2;nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-7|MDM2	nc|ENSG00000135679|Q00987-7|MDM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	987.499317	986.492041	2.7736	0.002739	-2.1842	-0.0021569	0.58944	0.00058207	987.498320654005	18.554	0.047958	18.54	18.492	18.54	-0.01395	279	52	1.4535767	0.030254722	1.4520572	295.17706		6.1438293	-0.0083005	-0.0013461	0.00012984	NaN	75.089	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3788.4			10418	2954	6083	6204							-0.0017454641023277873
IPASEVLM	8	Unmodified	_IPASEVLM_					0	0	0		ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4593667820002	1	859.459367	858.45209	1.9438	0.0016706	-6.0021	-0.0051586	-4.0583	-0.003488	859.4540083005019	25.033	0.14477	25.033	25.009	25.153	0	435	85	1.360811	0.0500679	1.360811	276.90646	0	10.18811						212	7	2	NaN	NaN	NaN	0.40747	1	5515	5515		36.036	5.2452	1	26011			10419	2570	6084	6205	8211	8211					0.017202353855054753
IPASEVLM	8	Unmodified	_IPASEVLM_					0	0	0		ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4593667820002	1	859.459367	858.45209	1.8469	0.0015874	0.7242	0.00062242	2.5711	0.0022098	859.4584769398998	24.96	0.048279	24.96	24.936	24.985	0	402	73	1.3804773	0.042892337	1.3804773	280.90826	0	8.727997						95	3	2	NaN	NaN	NaN	0.12449	1	5517	5517		59.445	0	1	9986			10420	2570	6084	6205	8212	8212					0.017202353855054753
IPASGDYVA	9	Unmodified	_IPASGDYVA_					0	0	0		ENSG00000176476|ENST00000317058|SGF29	ENSG00000176476|ENST00000317058|SGF29	ENSG00000176476|ENST00000317058|SGF29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.4410741809	1	892.441074	891.433798	2.5475	0.0022735	0.1865	0.00016644	2.734	0.0024399	892.4421709846144	18.722	0.11999	18.708	18.636	18.756	-0.014059	420	34	1.3697531	0.019666314	1.3682337	278.5634	0	3.9994812						52	6	2	NaN	NaN	NaN	0.29681	1	5827	5827		19.118	8.5134	1	3186.6			10421	5027	6085	6206	8213	8213					-0.016261832648524432
IPAYLAETL	9	Unmodified	_IPAYLAETL_					0	0	0		ENST00000515717.1_1_4:122590675-122593697:-|nuORF;ENST00000506395.5_1_4:122589625-122599515:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000515717.1_1_4:122590675-122593697:-|nuORF	ENST00000515717.1_1_4:122590675-122593697:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5506246302999	1	990.550625	989.543348	2.2028	0.002182	0.91757	0.0009089	3.1204	0.0030909	990.5516566996787	28.363	0.21717	28.363	28.267	28.484	0	213	76	1.4926696	0.04436958	1.4926696	303.10275	0	9.009735						294	10	2	NaN	NaN	NaN	0.17818	1	8205	8205		26.732	8.9326	1	31362			10422	4295	6086	6207	8214	8214					0.04815822354464672
IPCEEGDKL	9	Unmodified	_IPCEEGDKL_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.24187493790004	2	502.241875	1002.4692	1.8797	0.00094407	-0.98917	-0.0004968	0.89054	0.00044726	502.24124328174963	17.045	0.24006	17.045	16.949	17.189	0	1344	61	0.8098828	0.036945462	0.8098828	328.84824	0	15.001495						285	11	3	NaN	NaN	NaN	0.04743	1	8684	8684		48.002	3.3638	1	38548			10423	4242	6087	6208	8215	8215					-0.03193888799353317
IPCEEGDKL	9	Unmodified	_IPCEEGDKL_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.24187493790004	2	502.241875	1002.4692	1.5411	0.00077399	-1.4891	-0.00074788	0.051987	2.611E-05	502.2409694637089	17.042	0.31186	17.029	16.885	17.197	-0.013296	1344	58	0.8098828	0.035100102	0.8083634	328.84824	0	14.252197						254	14	3	NaN	NaN	NaN	0.19268	1	8509	8509		25.801	6.6374	1	37176			10424	4242	6087	6208	8216	8216					-0.03193888799353317
IPDAMDIVL	9	Unmodified	_IPDAMDIVL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5226953202999	1	986.522695	985.515419	1.6019	0.0015803	-1.6268	-0.0016049	-0.02492	-2.4585E-05	986.520802129893	32.249	0.096478	32.249	32.201	32.297	0	207	52	1.496219	0.030168176	1.496219	303.84058	0	6.1263123						123	5	3	NaN	NaN	NaN	0.56671	1	8066	8066		6.8632	1.9535	1	9124			10425	5292	6088	6209	8217	8217					0.022081761027152425
IPDEADFLL	9	Unmodified	_IPDEADFLL_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5248038103	1	1032.5248	1031.51753	1.4699	0.0015177	-4.9336	-0.005094	-3.4637	-0.0035763	1032.5202002218489	31.887	0.33787	31.887	31.79	32.128	0	123	112	1.5458313	0.06551397	1.5458313	313.72232	0	13.295898						853	15	4	NaN	NaN	NaN	0.18779	1	9844	9844		26.115	1.1539	1	165830			10426	76	6089	6210	8218	8218					0.003029281122053362
IPDEDDDVL	9	Unmodified	_IPDEDDDVL_					0	0	0		ENST00000487584.6_1_1:150898772-150913809:+|nuORF;nc|ENSG00000143379|Q15047-2|SETDB1;nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	ENST00000487584.6_1_1:150898772-150913809:+|nuORF	ENST00000487584.6_1_1:150898772-150913809:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4575121060998	1	1030.45751	1029.45024	2.0684	0.0021314	0.88217	0.00090904	2.9506	0.0030404	1030.4583333003384	23.224	0.21697	23.224	23.152	23.369	0	186	49	1.5086359	0.028370976	1.5086359	306.1817	0	5.7579346						197	10	2	NaN	NaN	NaN	0.074859	1	9741	9741		39.459	9.8604	1	17159			10427	3417	6090	6211	8219	8219					-0.0633114688941987
IPDEDDDVL	9	Unmodified	_IPDEDDDVL_					0	0	0		ENST00000487584.6_1_1:150898772-150913809:+|nuORF;nc|ENSG00000143379|Q15047-2|SETDB1;nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	ENST00000487584.6_1_1:150898772-150913809:+|nuORF	ENST00000487584.6_1_1:150898772-150913809:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.4575121060998	1	1030.45751	1029.45024	1.6717	0.0017226	1.5954	0.001644	3.267	0.0033665	1030.4592206255215	23.199	0.36179	23.186	23.065	23.427	-0.013294	186	67	1.5086359	0.039010048	1.5071164	306.1817	0	7.9171753						336	16	3	NaN	NaN	NaN	0.25448	1	9545	9545		21.835	3.8653	1	28446			10428	3417	6090	6211	8220	8220					-0.0633114688941987
IPDEIIDMV	9	Unmodified	_IPDEIIDMV_					0	0	0		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.5281746287	1	1044.52817	1043.5209	1.221	0.0012753	-3.772	-0.00394	-2.5511	-0.0026646	1044.5259183668225	31.259	0.26548	31.259	31.187	31.452	0	177	121	1.5139546	0.07090485	1.5139546	307.2064	0	14.387756						562	12	3	NaN	NaN	NaN	0.032764	1	10352	10352		55.494	16.035	1	116150			10429	2648	6091	6212	8221	8221					0.0008785489455931383
IPDEIIDMV	9	Oxidation (M)	_IPDEIIDM(Oxidation (M))V_		IPDEIIDM(1)V		IPDEIIDM(91)V	0	0	1		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7651828587001	2	530.765183	1059.51581	1.9655	0.0010432	-2.3597	-0.0012524	-0.39422	-0.00020924	530.7640633910551	26.601	0.1931	26.601	26.553	26.746	0	1320	91	0.824661	0.05535227	0.824661	334.60464	0	22.459076						374	9	3	NaN	NaN	NaN	0.01047	1	11057	11057		91.429	46.79	1	116010			10430	2648	6091	6213	8222	8222		300			-0.011564489680722545
IPDEIIDMV	9	Oxidation (M)	_IPDEIIDM(Oxidation (M))V_		IPDEIIDM(1)V		IPDEIIDM(83)V	0	0	1		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5230892508	1	1060.52309	1059.51581	1.9835	0.0021035	-1.6652	-0.001766	0.31824	0.0003375	1060.5215776670007	26.601	0.21729	26.601	26.553	26.77	0	177	88	1.5139546	0.05140865	1.5139546	307.14587	0	10.429626						258	10	2	NaN	NaN	NaN	0.013281	1	11058	11058		82.96	30.336	1	37228			10431	2648	6091	6213	8223	8223		300			-0.011564489680722545
IPDEIIDMV	9	Oxidation (M)	_IPDEIIDM(Oxidation (M))V_		IPDEIIDM(1)V		IPDEIIDM(67)V	0	0	1		ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	ENSG00000130520|ENST00000593829|LSM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5230892508	1	1060.52309	1059.51581	1.3507	0.0014325	-1.7248	-0.0018292	-0.3741	-0.00039674	1060.522557836658	26.601	0.21716	26.59	26.518	26.735	-0.010645	180	88	1.5121819	0.05140865	1.5106624	306.78622	0	10.429626						407	10	3	NaN	NaN	NaN	0.023828	1	10824	10824		67.154	17.321	1	42731			10432	2648	6091	6213	8224	8224		300			-0.011564489680722545
IPDEINDRVRF	11	Unmodified	_IPDEINDRVRF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.5772474649666	3	458.577247	1372.70991	0.83511	0.00038296	-0.67793	-0.00031088	0.15719	7.2082E-05	458.57690765380477	20.453	0.12018	20.453	20.405	20.525	0	1404	40	0.77288127	0.02407837	0.77288127	469.00952	0	14.611542						169	6	4	NaN	NaN	NaN	0.17366	1	19830	19830		29.509	20.418	1	25045			10433	1948	6092	6214	8225	8225					0.03846643512201808
IPDEINDRVRF	11	Unmodified	_IPDEINDRVRF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3622329641499	2	687.362233	1372.70991	1.8039	0.00124	-0.86432	-0.0005941	0.9396	0.00064585	687.3599812632925	20.477	0.048094	20.463	20.439	20.487	-0.014141	1077	40	0.9735726	0.023798943	0.9720532	393.8666	0	9.628052						71	3	3	NaN	NaN	NaN	0.65755	1	18897	18897		10.244	5.5146	1	4657.3			10434	1948	6092	6214	8226	8226					0.03846643512201808
IPDEINDRVRF	11	Unmodified	_IPDEINDRVRF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.5772474649666	3	458.577247	1372.70991	0.89644	0.00041109	1.8995	0.00087106	2.7959	0.0012821	458.5786161577343	20.477	0.26485	20.463	20.343	20.608	-0.014141	1401	40	0.77473325	0.024075806	0.7732138	470.13336	0	14.609985						217	12	4	NaN	NaN	NaN	0.14414	1	18898	18898		27.103	1.3011	1	28083			10435	1948	6092	6214	8227	8227					0.03846643512201808
IPDEKETRL	9	Unmodified	_IPDEKETRL_					0	0	0		ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.8009455883	2	550.800946	1099.58734	1.2848	0.00070765	-1.8488	-0.0010183	-0.56405	-0.00031068	550.8003400075115	14.357	0.19204	14.357	14.261	14.453	0	1257	61	0.86339295	0.036833763	0.86339295	350.1562	0	14.938232						196	9	2	NaN	NaN	NaN	0.43456	1	12835	12835		12.307	0.25799	1	24265			10436	2952	6093	6215	8228	8228					0.041528067808030755
IPDEKETRL	9	Unmodified	_IPDEKETRL_					0	0	0		ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.53638921439995	3	367.536389	1099.58734	1.5512	0.00057011	-2.0058	-0.00073721	-0.45464	-0.0001671	367.53564279290663	14.333	0.19196	14.333	14.285	14.477	0	1509	43	0.70793515	0.026024997	0.70793515	430.65863	0	15.831818						210	9	3	NaN	NaN	NaN	0.057383	1	12836	12836		33.567	5.2716	1	25556			10437	2952	6093	6215	8229	8229					0.041528067808030755
IPDEKETRL	9	Unmodified	_IPDEKETRL_					0	0	0		ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.53638921439995	3	367.536389	1099.58734	1.4694	0.00054006	-1.3745	-0.00050517	0.09492	3.4886E-05	367.5356624736312	14.38	0.28745	14.369	14.273	14.561	-0.011219	1509	49	0.70793515	0.029742837	0.7064157	430.65863	0	18.093475						209	13	3	NaN	NaN	NaN	0.084037	1	12505	12505		33.907	10.555	1	26071			10438	2952	6093	6215	8230	8230					0.041528067808030755
IPDELIIEV	9	Unmodified	_IPDELIIEV_					0	0	0		nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5874040671001	1	1040.5874	1039.58013	1.033	0.0010749	-2.2244	-0.0023147	-1.1914	-0.0012397	1040.5848954771682	31.839	0.096512	31.839	31.79	31.887	0	153	58	1.5281296	0.03366363	1.5281296	310.09805	0	6.831238						114	5	2	NaN	NaN	NaN	0.16171	1	10209	10209		27.789	5.9538	1	22960			10439	4312	6094	6216	8231	8231					0.06192074180398777
IPDELIIEV	9	Unmodified						0	0	0		nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1040.5874	1039.58013	0.99885	0.0010394	-0.46079	-0.00047949	0.53807	0.00055991	1040.5870500928236	32.2	0.07238	32.196	32.123	32.196	-0.0037613	114	52	1.5511382	0.030065894	1.5496187	314.7671		6.101166	0.17857	0.0010198	0.010745	NaN	27.789	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6751			10440	4312	6094	6216							0.06192074180398777
IPDEQIVVM	9	Unmodified	_IPDEQIVVM_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2757177552501	2	522.275718	1042.53688	1.2552	0.00065555	-0.44438	-0.00023209	0.81081	0.00042346	522.2759485545193	26.819	0.12065	26.819	26.795	26.915	0	1296	73	0.8394264	0.04425788	0.8394264	340.66684	0	17.961304						179	6	2	NaN	NaN	NaN	0.40649	1	10327	10327		13.463	0.46021	1	22416			10441	1262	6095	6217	8232	8232					0.017315611314415946
IPDEQIVVM	9	Unmodified	_IPDEQIVVM_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5441590439	1	1043.54416	1042.53688	1.643	0.0017145	0.57611	0.0006012	2.2191	0.0023157	1043.5455307408772	26.795	0.29005	26.795	26.698	26.988	0	153	79	1.5281296	0.046058893	1.5281296	310.08652	0	9.346222						432	13	3	NaN	NaN	NaN	0.01452	1	10329	10329		79.199	17.928	1	58854			10442	1262	6095	6217	8233	8233					0.017315611314415946
IPDEQIVVM	9	Unmodified	_IPDEQIVVM_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2757177552501	2	522.275718	1042.53688	1.1428	0.00059683	0.00031745	1.6579E-07	1.1431	0.000597	522.2762340870615	26.842	0.19307	26.832	26.808	27.001	-0.010645	1290	70	0.84311575	0.042406917	0.8415963	342.1641	0	17.210144						171	9	2	NaN	NaN	NaN	0.14787	1	10121	10121		28.896	4.3336	1	18431			10443	1262	6095	6217	8234	8234					0.017315611314415946
IPDEQIVVM	9	Unmodified	_IPDEQIVVM_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5441590439	1	1043.54416	1042.53688	1.2337	0.0012875	0.1402	0.00014631	1.3739	0.0014338	1043.5448844280113	26.794	0.26547	26.783	26.687	26.952	-0.010645	150	67	1.5299006	0.038960457	1.5283811	310.4459	0	7.905792						395	12	3	NaN	NaN	NaN	0.052553	1	10122	10122		45.827	10.53	1	53302			10444	1262	6095	6217	8235	8235					0.017315611314415946
IPDEQIVVM	9	Oxidation (M)	_IPDEQIVVM(Oxidation (M))_		IPDEQIVVM(1)		IPDEQIVVM(110)	0	0	1		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.539073666	1	1059.53907	1058.5318	1.471	0.0015586	-0.93492	-0.00099059	0.53612	0.00056804	1059.5379184001215	22.428	0.2408	22.414	22.318	22.559	-0.013731	180	73	1.5121819	0.042556405	1.5106624	306.7899	0	8.63382						375	11	3	NaN	NaN	NaN	0.0021374	1	10785	10785		110.61	17.134	1	46625			10445	1262	6095	6218	8236	8236		135			0.004872572688327637
IPDEVFDAV	9	Unmodified	_IPDEVFDAV_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4935036819	1	1004.4935	1003.48623	1.8576	0.0018659	3.7182	0.0037349	5.5757	0.0056008	1004.5007388077119	27.615	0.2172	27.615	27.519	27.736	0	237	157	1.4784646	0.092323184	1.4784646	300.16095	0	18.743652						356	10	2	NaN	NaN	NaN	0.094712	1	8721	8721		36.586	5.0254	1	107820			10446	705	6096	6219	8237	8237					-0.015376449219047572
IPDEVLQTL	9	Unmodified	_IPDEVLQTL_					0	0	0		ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2871397213	2	514.28714	1026.55973	1.9795	0.001018	-1.9954	-0.0010262	-0.015975	-8.2157E-06	514.2863629831155	27.905	0.048273	27.905	27.881	27.929	0	1278	64	0.85049206	0.0387277	0.85049206	345.22766	0	15.720184						122	3	3	NaN	NaN	NaN	0.21199	1	9636	9636		24.562	0	1	10578			10447	4262	6097	6220	8238	8238					0.04750903520562133
IPDFDVDL	8	Unmodified	_IPDFDVDL_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4563898941	1	933.45639	932.449113	1.7357	0.0016202	1.6667	0.0015558	3.4025	0.003176	933.4584761378114	30.342	0.19305	30.342	30.222	30.415	0	306	79	1.4375578	0.046323657	1.4375578	292.15714	0	9.414398						217	9	2	NaN	NaN	NaN	0.69898	1	6659	6659		19.118	1.338	1	20123			10448	38	6098	6221	8239	8239					-0.019813164676747874
IPDFDVDL	8	Unmodified	_IPDFDVDL_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4563898941	1	933.45639	932.449113	1.1395	0.0010636	1.2281	0.0011464	2.3676	0.0022101	933.4574233712576	30.317	0.12063	30.311	30.19	30.311	-0.0064087	303	73	1.4393384	0.042751193	1.437819	292.519	0	8.688416						127	6	2	NaN	NaN	NaN	0.49126	1	6517	6517		31.561	9.4347	1	13305			10449	38	6098	6221	8240	8240					-0.019813164676747874
IPDGEFTAL	9	Unmodified	_IPDGEFTAL_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4829389956	1	962.482939	961.475663	1.3808	0.001329	2.1396	0.0020593	3.5204	0.0033884	962.4871428191933	26.601	0.28957	26.59	26.47	26.759	-0.010645	297	115	1.4428991	0.06759596	1.4413797	293.1138	0	13.731598						594	13	3	NaN	NaN	NaN	0.10956	1	7221	7221		34.439	4.8405	1	85949			10450	5713	6099	6222	8241	8241					-0.006616275763349222
IPDHPDLLL	9	Unmodified	_IPDHPDLLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7898495857501	2	516.78985	1031.56515	1.9795	0.001023	-2.6416	-0.0013651	-0.66204	-0.00034213	516.7863222874994	25.636	0.26541	25.624	25.552	25.817	-0.0116	1263	79	0.85970795	0.047925293	0.8581885	348.94614	0	19.452393						450	12	4	NaN	NaN	NaN	0.13602	1	9648	9648		30.61	7.2757	1	86572			10451	838	6100	6223	8242	8242					0.05062627103052364
IPDIDLKL	8	Unmodified	_IPDIDLKL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.78149323739996	2	463.781493	925.548434	0.49902	0.00023144	-1.0156	-0.00047104	-0.51662	-0.0002396	463.7811640046587	26.601	0.19303	26.59	26.542	26.735	-0.010645	1344	46	0.8098828	0.027725577	0.8083634	329.218	0	11.270508						159	9	2	NaN	NaN	NaN	0.48912	1	6383	6383		31.675	2.0771	1	14466			10452	4896	6101	6224	8243	8243					0.08268126217080862
IPDIIDEAAF	10	Unmodified	_IPDIIDEAAF_					0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.28459703235	2	552.284597	1102.55464	0.45066	0.00024889	-4.9278	-0.0027215	-4.4771	-0.0024726	552.2810059927472	31.356	0.096535	31.356	31.308	31.404	0	1302	37	0.8357362	0.02214086	0.8357362	338.92853	0	8.979126						65	5	2	NaN	NaN	NaN	0.70677	1	12942	12942		7.5876	2.3987	1	6477	+		10453	10465	6102	6225	8244	8244					0.007465996579412604
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2924220644501	2	541.292422	1080.57029	0.83973	0.00045454	-0.97756	-0.00052914	-0.13783	-7.4607E-05	541.2919351883941	31.332	0.12066	31.332	31.308	31.428	0	1245	43	0.87076044	0.025783658	0.87076044	353.22107	0	10.459015						202	6	4	NaN	NaN	NaN	0.0065408	1	12020	12020		75.698	5.9163	1	48847			10454	726	6103	6226	8245	8245					0.03322886175010353
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5775676623	1	1081.57757	1080.57029	0.89733	0.00097053	0.71514	0.00077348	1.6125	0.001744	1081.5786109844057	31.356	0.19307	31.356	31.308	31.501	0	129	157	1.5422925	0.092059135	1.5422925	312.81656	0	18.671967						656	9	5	NaN	NaN	NaN	2.1222E-13	1	12021	12021		151.71	40.28	1	221100			10455	726	6103	6226	8246	8246					0.03322886175010353
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2924220644501	2	541.292422	1080.57029	0.90324	0.00048892	-0.35065	-0.00018981	0.55258	0.00029911	541.2924841954059	31.331	0.19304	31.326	31.277	31.47	-0.0050716	1245	49	0.87076044	0.029463828	0.869241	353.22107	0	11.951904						241	9	4	NaN	NaN	NaN	0.0040309	1	11704	11704		79.199	15.241	1	53949			10456	726	6103	6226	8247	8247					0.03322886175010353
IPDILDGPEL	10	Unmodified	_IPDILDGPEL_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5775676623	1	1081.57757	1080.57029	1.5294	0.0016542	-0.43232	-0.00046758	1.0971	0.0011866	1081.5770103095074	31.331	0.21716	31.326	31.277	31.495	-0.0050716	126	157	1.544062	0.092059135	1.5425426	313.17548	0	18.671967						680	10	4	NaN	NaN	NaN	8.0846E-06	1	11705	11705		119.86	30.603	1	221160			10457	726	6103	6226	8248	8248					0.03322886175010353
IPDLDRHQL	9	Unmodified	_IPDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.5366121150667	3	369.536612	1105.58801	2.0098	0.0007427	-0.32571	-0.00012036	1.6841	0.00062233	369.5363062175976	17.861	0.16787	17.861	17.789	17.957	0	1488	52	0.7209441	0.03158295	0.7209441	438.54297	0	19.211578						202	8	3	NaN	NaN	NaN	0.12328	1	13090	13090		34.454	15.896	1	28409			10458	4455	6104	6227	8249	8249					0.03943646220523078
IPDLDRHQL	9	Unmodified	_IPDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.5366121150667	3	369.536612	1105.58801	2.0943	0.0007739	-1.5378	-0.00056826	0.55647	0.00020564	369.5358766430709	17.906	0.16791	17.892	17.82	17.988	-0.013786	1485	103	0.72280174	0.06321734	0.7212823	439.67294	0	38.454468						238	8	2	NaN	NaN	NaN	0.060816	1	12730	12730		31.198	13.616	1	38749			10459	4455	6104	6227	8250	8250					0.03943646220523078
IPDLDWEL	8	Unmodified	_IPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4985890598001	1	1000.49859	999.491313	1.8353	0.0018362	-1.3584	-0.001359	0.47694	0.00047718	1000.4970052712413	32.707	0.48265	32.707	32.539	33.021	0	207	121	1.496219	0.07097256	1.496219	303.78198	0	14.40979						716	21	2	NaN	NaN	NaN	0.14214	1	8565	8565		55.947	23.495	1	194600			10460	847	6105	6228	8251	8251					-0.00845341059277871
IPDLDWEL	8	Unmodified						0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.49859	999.491313	1.4859	0.0014867	-1.3522	-0.0013529	0.13375	0.00013382	1000.4974584028189	32.682	0.36198	32.679	32.558	32.92	-0.0031052	204	109	1.4979934	0.06386173	1.496474	304.14224		12.966034	-0.014162	3.462E-06	0.00012748	NaN	55.947	720	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167660			10461	847	6105	6228							-0.00845341059277871
IPDPDKNWATL	11	Unmodified	_IPDPDKNWATL_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3273275143	2	635.327328	1268.6401	1.7125	0.001088	-4.1002	-0.002605	-2.3877	-0.001517	635.3250225907456	23.875	0.16866	23.875	23.803	23.971	0	1122	73	0.9460945	0.044009984	0.9460945	383.06302	0	17.819153						221	8	3	NaN	NaN	NaN	0.22256	1	18208	18208		36.622	10.507	1	33417			10462	1719	6106	6229	8252	8252					0.016527648436067466
IPDPDKNWATL	11	Unmodified	_IPDPDKNWATL_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.3273275143	2	635.327328	1268.6401	1.735	0.0011023	-3.415	-0.0021697	-1.68	-0.0010673	635.3240294965736	23.899	0.19287	23.886	23.813	24.006	-0.01305	1122	64	0.9460945	0.0384984	0.9445751	383.06302	0	15.587524						236	9	4	NaN	NaN	NaN	0.32023	1	17393	17393		26.96	5.1891	1	30495			10463	1719	6106	6229	8253	8253					0.016527648436067466
IPDPLQHGNYL	11	Unmodified	_IPDPLQHGNYL_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8274946898001	2	633.827495	1265.64044	1.7467	0.0011071	-2.3213	-0.0014713	-0.57461	-0.0003642	633.8269011160892	24.068	0.36193	24.068	23.875	24.237	0	1143	88	0.9332562	0.053193092	0.9332562	377.87457	0	21.537842						540	16	4	NaN	NaN	NaN	0.0044011	1	18126	18126		74.737	47.441	1	113390			10464	2891	6107	6230	8254	8254					0.018241845634747733
IPDPLQHGNYL	11	Unmodified	_IPDPLQHGNYL_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8274946898001	2	633.827495	1265.64044	1.7154	0.0010873	-3.5879	-0.0022741	-1.8725	-0.0011868	633.8255781013883	24.092	0.26537	24.079	23.91	24.175	-0.012749	1143	91	0.9332562	0.055024385	0.93173677	377.87457	0	22.279327						468	12	3	NaN	NaN	NaN	0.05951	1	17326	17326		47.424	20.378	1	109240			10465	2891	6107	6230	8255	8255					0.018241845634747733
IPDQLGYLVL	10	Unmodified	_IPDQLGYLVL_					0	0	0		ENST00000474831.5_1_7:99746595-99751042:+|nuORF;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8264320573	2	565.826432	1129.63831	1.3081	0.00074015	-2.5731	-0.001456	-1.2651	-0.0007158	565.8250691712254	33.673	0.24133	33.673	33.6	33.842	0	1185	64	0.90755045	0.03859818	0.90755045	367.94345	0	15.648651						424	11	4	NaN	NaN	NaN	0.047882	1	14084	14084		53.14	15.009	1	127850			10466	5541	6108	6231	8256	8256					0.0786775582566861
IPDQLGYLVL	10	Unmodified	_IPDQLGYLVL_					0	0	0		ENST00000474831.5_1_7:99746595-99751042:+|nuORF;ENST00000473459.5_1_7:99747130-99750374:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	ENST00000474831.5_1_7:99746595-99751042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.8264320573	2	565.826432	1129.63831	0.76635	0.00043362	-1.9328	-0.0010937	-1.1665	-0.00066003	565.8247971645402	33.671	0.26548	33.67	33.597	33.863	-0.0018463	1182	67	0.9093879	0.040434003	0.90786844	368.68835	0	16.392944						429	12	4	NaN	NaN	NaN	0.15916	1	13631	13631		39.039	11.25	1	126410			10467	5541	6108	6231	8257	8257					0.0786775582566861
IPDRGLGR	8	Unmodified	_IPDRGLGR_					0	0	0		nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	nc|ENSG00000185480|Q9NWS1-6|PARPBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.5108255011002	1	883.510826	882.503549	0.85505	0.00075545	7.3683	0.0065099	8.2233	0.0072654	883.5182219838282	32.103	0.19303	32.099	32.027	32.22	-0.0037575	342	64	1.4161754	0.037441134	1.4146559	288.04846	0	7.6154785						183	9	2	NaN	NaN	NaN	0.49126	1	5717	5717		31.561	0.76994	1	22596			10468	5417	6109	6232	8258	8258					0.05759740194423557
IPDSASQALLM	11	Oxidation (M)	_IPDSASQALLM(Oxidation (M))_		IPDSASQALLM(1)		IPDSASQALLM(42)	0	0	1		ENST00000578826.1_1_17:38282575-38282656:+|nuORF	ENST00000578826.1_1_17:38282575-38282656:+|nuORF	ENST00000578826.1_1_17:38282575-38282656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2946387899	2	581.294639	1160.57472	2.1328	0.0012398	-4.778	-0.0027774	-2.6453	-0.0015377	581.2923923650512	26.167	0.16891	26.156	26.083	26.252	-0.011135	1206	106	0.894683	0.064358115	0.89316356	362.61008	0	26.084015						435	8	3	NaN	NaN	NaN	0.081525	1	14649	14649		41.839	6.3156	1	89197			10469	7673	6110	6233	8259	8259		635			0.0008602732623330667
IPDSFFSSL	9	Unmodified	_IPDSFFSSL_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4985890598001	1	1012.49859	1011.49131	1.4874	0.001506	0.41948	0.00042472	1.9069	0.0019307	1012.4990447522598	31.887	0.12068	31.887	31.815	31.935	0	204	79	1.4979934	0.04614687	1.4979934	304.09314	0	9.367828						317	6	3	NaN	NaN	NaN	0.028349	1	9033	9033		61.271	11.438	1	69243			10470	3030;4060	6111	6234	8260	8260					-0.01397341059282553
IPDSFFSSL	9	Unmodified	_IPDSFFSSL_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;ENST00000600552.5_1_19:41083005-41084032:+|nuORF;SHKBP1|p.W205Cfs*48|1|0.21|ENSG00000160410|chr19:40580617-40580621|GGATC/-|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4985890598001	1	1012.49859	1011.49131	1.0402	0.0010532	0.21591	0.0002186	1.2561	0.0012718	1012.4984072071323	31.862	0.16891	31.857	31.809	31.978	-0.0044155	204	94	1.4979934	0.05502999	1.496474	304.09314	0	11.171082						399	8	4	NaN	NaN	NaN	0.036546	1	8859	8859		52.624	10.84	1	71004			10471	3030;4060	6111	6234	8261	8261					-0.01397341059282553
IPDSTAETL	9	Unmodified	_IPDSTAETL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;PPFIBP1|p.E84Q|1|0.22|ENSG00000110841|chr12:27635095-27635095|G/C|missense_variant;nc|ENSG00000110841|Q86W92-5|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4727682398001	1	946.472768	945.465492	1.7227	0.0016304	-0.8301	-0.00078566	0.89256	0.00084478	946.4722007986767	20.237	0.33644	20.237	20.069	20.405	0	330	67	1.4233059	0.03921783	1.4233059	289.20273	0	7.968689						470	15	3	NaN	NaN	NaN	0.011942	1	6955	6955		87.021	42.718	1	60983			10472	1780	6112	6235	8262	8262					-0.009422353015565932
IPDSTAETL	9	Unmodified	_IPDSTAETL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;PPFIBP1|p.E84Q|1|0.22|ENSG00000110841|chr12:27635095-27635095|G/C|missense_variant;nc|ENSG00000110841|Q86W92-5|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4727682398001	1	946.472768	945.465492	1.5928	0.0015075	1.0638	0.0010069	2.6566	0.0025144	946.473962593864	20.237	0.38518	20.222	20.054	20.439	-0.014143	327	76	1.425088	0.04457271	1.4235686	289.56485	0	9.056763						326	17	2	NaN	NaN	NaN	0.036546	1	6823	6823		52.624	16.038	1	46314			10473	1780	6112	6235	8263	8263					-0.009422353015565932
IPEAALLVL	9	Unmodified	_IPEAALLVL_					0	0	0		ENSG00000105726|ENST00000357324|ATP13A1;ENST00000487364.1_1_19:19771386-19774475:-|nuORF	ENSG00000105726|ENST00000357324|ATP13A1	ENSG00000105726|ENST00000357324|ATP13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.5920955145001	1	938.592096	937.584819	0.69347	0.00065089	0.081912	7.6882E-05	0.77538	0.00072777	938.5927810949518	33.745	0.12066	33.745	33.673	33.793	0	264	70	1.4624695	0.040898085	1.4624695	297.1963	0	8.311127						170	6	3	NaN	NaN	NaN	0.10956	1	6773	6773		34.439	0	1	17741			10474	1563	6113	6236	8264	8264					0.11353003113799787
IPEAVVEVL	9	Unmodified	_IPEAVVEVL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5662746945001	1	968.566275	967.558998	1.5533	0.0015045	0.27516	0.00026651	1.8285	0.001771	968.5665713295082	29.401	0.048265	29.401	29.377	29.425	0	288	52	1.4482387	0.030245066	1.4482387	294.17236	0	6.143524						68	3	2	NaN	NaN	NaN	0.074859	1	7547	7547		39.459	11.67	1	5653.5			10475	5400	6114	6237	8265	8265					0.07392108871522396
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5819247587	1	1042.58192	1041.57465	1.3897	0.0014489	-2.3783	-0.0024796	-0.98862	-0.0010307	1042.5787218056273	34.999	0.2411	34.999	34.831	35.072	0	123	136	1.5458313	0.07962859	1.5458313	313.68234	0	16.158356						657	11	2	NaN	NaN	NaN	0.030391	1	10288	10288		58.599	0	1	219260			10476	5707	6115	6238	8266	8266					0.055523953885767696
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7946006126501	2	521.794601	1041.57465	1.2994	0.000678	-1.6904	-0.00088206	-0.39106	-0.00020406	521.7939431192685	34.975	0.36177	34.975	34.831	35.192	0	1287	82	0.8449601	0.049782038	0.8449601	342.91675	0	20.20343						637	16	4	NaN	NaN	NaN	0.03623	1	10289	10289		52.758	0	1	265730			10477	5707	6115	6238	8267	8267					0.055523953885767696
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5819247587	1	1042.58192	1041.57465	0.89137	0.00092933	2.1454	0.0022368	3.0368	0.0031661	1042.5845090907408	35.144	0.1448	35.144	35.12	35.265	0	123	124	1.5458313	0.07258117	1.5458313	313.6823	0	14.7282715						417	7	2	NaN	NaN	NaN	0.043119	1	10292	10292		49.833	0	1	84402			10478	5707	6115	6238	8268	8268					0.055523953885767696
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7946006126501	2	521.794601	1041.57465	1.5703	0.00081937	-1.9418	-0.0010132	-0.37152	-0.00019386	521.794570346002	35.722	0.048218	35.722	35.698	35.746	0.00052643	1284	34	0.8468043	0.020283759	0.8452849	343.6652	0	8.231934						40	3	2	NaN	NaN	NaN	0.41766	1	10082	10082		13.003	0	1	3266.3			10479	5707	6115	6238	8269	8269					0.055523953885767696
IPEDLPFVL	9	Unmodified	_IPEDLPFVL_					0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5819247587	1	1042.58192	1041.57465	1.142	0.0011907	2.7616	0.0028792	3.9036	0.0040699	1042.5850150917515	35.143	0.1931	35.143	35.119	35.312	-4.5776E-05	117	124	1.5493695	0.07257354	1.54785	314.40027	0	14.726715						472	9	2	NaN	NaN	NaN	0.10956	1	10085	10085		34.439	0	1	88736			10480	5707	6115	6238	8270	8270					0.055523953885767696
IPEDLPFVL	9	Unmodified						0	0	0		PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	PCDHB11|p.S395F|1|0.04|ENSG00000197479|chr5:141200958-141200958|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.794601	1041.57465	1.613	0.00084166	-1.8033	-0.00094095	-0.19028	-9.9287E-05	521.7936001099345	34.95	0.24114	34.95	34.781	35.022	-4.5776E-05	1284	100	0.8468043	0.060818434	0.8452849	343.6652		24.682404	-0.012826	-4.8443E-05	0.00016237	NaN	52.758	563	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259330			10481	5707	6115	6238							0.055523953885767696
IPEDQIDVVL	10	Unmodified	_IPEDQIDVVL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8109789583501	2	570.810979	1139.6074	1.6395	0.00093587	-5.9696	-0.0034075	-4.3301	-0.0024717	570.8079193253919	29.015	0.16896	29.015	28.991	29.16	0	1185	73	0.90755045	0.044119358	0.90755045	367.90463	0	17.885223						231	8	3	NaN	NaN	NaN	0.5626	1	14442	14442		16.858	5.688	1	56869			10482	2784	6116	6239	8271	8271					0.043185577207850656
IPEDVSGLVSL	11	Unmodified	_IPEDVSGLVSL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1128.6146814501	1	1128.61468	1127.6074	2.3199	0.0026182	-1.0423	-0.0011764	1.2775	0.0014418	1128.6132751080913	29.787	0.16894	29.787	29.739	29.908	0	72	94	1.5758814	0.054779768	1.5758814	319.46106	0	11.104889						404	8	3	NaN	NaN	NaN	0.009927	1	14004	14004		69.363	30.324	1	48679			10483	1667	6117	6240	8272	8272					0.04870557720778379
IPEDVSGLVSL	11	Unmodified	_IPEDVSGLVSL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1128.6146814501	1	1128.61468	1127.6074	0.91762	0.0010356	0.19161	0.00021625	1.1092	0.0012519	1128.6147820296198	29.811	0.1689	29.803	29.731	29.9	-0.0070648	72	94	1.5758814	0.05478549	1.5743619	319.46103	0	11.106079						369	8	3	NaN	NaN	NaN	0.027106	1	13564	13564		58.2	28.164	1	45679			10484	1667	6117	6240	8273	8273					0.04870557720778379
IPEENIATM	9	Oxidation (M)	_IPEENIATM(Oxidation (M))_		IPEENIATM(1)		IPEENIATM(53)	0	0	1		nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9;ENSG00000183826|ENST00000481247|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2471572810501	2	517.247157	1032.47976	1.7233	0.00089137	-0.69134	-0.00035759	1.0319	0.00053377	517.2468212983207	18.674	0.16797	18.66	18.588	18.756	-0.014059	1329	43	0.81912065	0.025853395	0.8176012	332.46832	0	10.4935						150	8	3	NaN	NaN	NaN	0.03618	1	9667	9667		52.78	19.354	1	12994			10485	5330	6118	6241	8274	8274		556			-0.035179061449071014
IPEGLPAVI	9	Unmodified	_IPEGLPAVI_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000074370|Q93084-5|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;ENST00000549840.1_1_12:110765624-110769845:+|nuORF	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	908.5451453219001	1	908.545145	907.537869	1.7996	0.0016351	-0.34708	-0.00031534	1.4526	0.0013197	908.5445795731548	29.546	0.24138	29.546	29.449	29.691	0	372	79	1.3983358	0.04639268	1.3983358	284.2995	0	9.43222						347	11	3	NaN	NaN	NaN	0.043119	1	6199	6199		49.833	10.915	1	38606			10486	4945	6119	6242	8275	8275					0.0804014356266407
IPEGLPAVI	9	Unmodified	_IPEGLPAVI_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000074370|Q93084-5|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983-3|ATP2A1;ENST00000549840.1_1_12:110765624-110769845:+|nuORF	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	908.5451453219001	1	908.545145	907.537869	1.5674	0.001424	0.062651	5.6921E-05	1.63	0.001481	908.5446724960236	29.545	0.28955	29.538	29.442	29.731	-0.0070648	372	76	1.3983358	0.04460597	1.3968164	284.2995	0	9.068939						364	13	3	NaN	NaN	NaN	0.056143	1	6081	6081		44.302	10.604	1	40554			10487	4945	6119	6242	8276	8276					0.0804014356266407
IPEGTILTM	9	Unmodified	_IPEGTILTM_					0	0	0		ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5226953203	1	974.522695	973.515419	1.4777	0.0014401	-1.9387	-0.0018893	-0.46093	-0.00044919	974.5232193611208	27.639	0.07239	27.629	27.581	27.653	-0.009552	267	40	1.4606913	0.023116231	1.4591719	296.6763	0	4.6950684						87	4	2	NaN	NaN	NaN	0.10956	1	7557	7557		34.439	9.4778	1	7274.1			10488	1126	6120	6243	8277	8277					0.027601761027312932
IPEKFQHIL	9	Unmodified	_IPEKFQHIL_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8267664083002	2	562.826766	1123.63898	2.2329	0.0012567	-2.8527	-0.0016056	-0.61984	-0.00034886	562.8254487058182	19.948	0.19237	19.948	19.9	20.093	0	1185	112	0.90755045	0.06803584	0.90755045	367.96713	0	27.585175						558	9	4	NaN	NaN	NaN	0.0035249	1	13842	13842		106.42	45.441	1	163250			10489	6037	6121	6244	8278	8278					0.08210595265381926
IPEKFQHIL	9	Unmodified	_IPEKFQHIL_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.55360309440005	3	375.553603	1123.63898	1.8986	0.00071301	-1.1499	-0.00043184	0.74867	0.00028117	375.5531014956	20.068	0.21669	20.054	19.982	20.198	-0.014141	1458	64	0.7395112	0.038976073	0.73799175	449.74832	0	23.704071						437	10	4	NaN	NaN	NaN	0.048656	1	13415	13415		35.523	15.619	1	166720			10490	6037	6121	6244	8279	8279					0.08210595265381926
IPEKFQHIL	9	Unmodified	_IPEKFQHIL_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8267664083002	2	562.826766	1123.63898	1.7317	0.00097467	-0.72679	-0.00040906	1.005	0.00056562	562.8261679756629	20.068	0.21669	20.054	19.982	20.198	-0.014141	1188	103	0.90571284	0.06252271	0.9041934	367.22205	0	25.349884						703	10	4	NaN	NaN	NaN	0.31471	1	13417	13417		17.97	2.7943	1	153890			10491	6037	6121	6244	8280	8280					0.08210595265381926
IPEKFQHIL	9	Unmodified						0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	375.553603	1123.63898	2.0243	0.00076023	-1.9282	-0.00072415	0.096077	3.6082E-05	375.552897061539	19.948	0.24043	19.948	19.876	20.117	0	1458	55	0.7395112	0.033406258	0.7395112	449.74832		20.31668	-0.052773	-0.00055174	0.00075972	NaN	35.523	393	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174460			10492	6037	6121	6244							0.08210595265381926
IPENVDITL	9	Unmodified	_IPENVDITL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000514842.5_1_4:39459094-39460113:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF;RPL9-UGDH|2|fusion;RPL9-UGDH|1|fusion	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5513529118001	1	1013.55135	1012.54408	2.2893	0.0023203	-0.56781	-0.00057551	1.7215	0.0017448	1013.5508876298121	27.205	0.41027	27.205	27.084	27.495	0	204	136	1.4979934	0.0799247	1.4979934	304.0889	0	16.224518						1286	18	4	NaN	NaN	NaN	0.030545	1	9089	9089		58.398	8.0827	1	610600			10493	4252	6122	6245	8281	8281					0.03830617003529824
IPENVDITL	9	Unmodified	_IPENVDITL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000514842.5_1_4:39459094-39460113:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF;RPL9-UGDH|2|fusion;RPL9-UGDH|1|fusion	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5513529118001	1	1013.55135	1012.54408	2.0996	0.002128	-0.6268	-0.00063529	1.4728	0.0014927	1013.5510980656145	27.228	0.43436	27.218	27.074	27.508	-0.010124	204	127	1.4979934	0.074584484	1.496474	304.0889	0	15.140472						1292	19	4	NaN	NaN	NaN	0.028404	1	8912	8912		61.199	2.9991	1	594360			10494	4252	6122	6245	8282	8282					0.03830617003529824
IPEPASPQL	9	Unmodified	_IPEPASPQL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.2609249708	2	476.260925	950.507297	1.5676	0.0007466	-1.8388	-0.00087575	-0.27116	-0.00012914	476.2598144073241	22.212	0.1206	22.212	22.139	22.26	0	1329	100	0.81912065	0.06098318	0.81912065	332.84528	0	24.780182						172	6	3	NaN	NaN	NaN	0.03618	1	7099	7099		52.78	5.2982	1	22831			10495	3082	6123	6246	8283	8283					0.030063651776117695
IPEPASPQL	9	Unmodified	_IPEPASPQL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.514573475	1	951.514573	950.507297	1.7903	0.0017035	0.050254	4.7817E-05	1.8406	0.0017513	951.5145473247999	22.212	0.12059	22.212	22.163	22.284	0	330	64	1.4233059	0.03742516	1.4233059	289.18073	0	7.603882						207	6	3	NaN	NaN	NaN	0.022082	1	7101	7101		69.363	16.583	1	21968			10496	3082	6123	6246	8284	8284					0.030063651776117695
IPEPASPQL	9	Unmodified	_IPEPASPQL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.514573475	1	951.514573	950.507297	1.2145	0.0011556	-0.58184	-0.00055363	0.63268	0.00060201	951.5140261487768	22.211	0.12065	22.197	22.149	22.27	-0.013731	327	76	1.425088	0.044553757	1.4235686	289.54282	0	9.052216						215	6	3	NaN	NaN	NaN	0.024359	1	6970	6970		66.481	16.52	1	23609			10497	3082	6123	6246	8285	8285					0.030063651776117695
IPEPIDPLF	9	Unmodified	_IPEPIDPLF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.78677558055	2	520.786776	1039.559	1.3573	0.00070688	-1.8516	-0.00096431	-0.4943	-0.00025743	520.7860437067601	32.321	0.24134	32.321	32.249	32.49	0	1305	70	0.83389086	0.04246664	0.83389086	338.43298	0	17.234985						345	11	3	NaN	NaN	NaN	0.094712	1	10203	10203		36.586	9.8549	1	64257			10498	3801;444	6124	6247	8286	8286					0.04080108871517041
IPEPIDPLF	9	Unmodified	_IPEPIDPLF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5662746945	1	1040.56627	1039.559	1.5629	0.0016263	0.71798	0.0007471	2.2809	0.0023734	1040.566948041542	32.321	0.19309	32.321	32.249	32.442	0	147	124	1.5316714	0.072627306	1.5316714	310.81686	0	14.738037						751	9	4	NaN	NaN	NaN	0.028349	1	10204	10204		61.271	16.969	1	187920			10499	3801;444	6124	6247	8287	8287					0.04080108871517041
IPEPIDPLF	9	Unmodified	_IPEPIDPLF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5662746945	1	1040.56627	1039.559	1.1575	0.0012045	0.18855	0.0001962	1.3461	0.0014007	1040.5663160895804	32.32	0.26548	32.316	32.172	32.437	-0.0037613	144	139	1.533442	0.08148873	1.5319226	311.17618	0	16.536224						872	12	4	NaN	NaN	NaN	0.00010594	1	9987	9987		122.55	37.671	1	199990			10500	3801;444	6124	6247	8288	8288					0.04080108871517041
IPEPIDPLF	9	Unmodified						0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.786776	1039.559	0.93154	0.00048514	-1.2888	-0.00067118	-0.35724	-0.00018604	520.7860630304494	32.32	0.21721	32.316	32.244	32.461	-0.0037613	1302	76	0.8357362	0.046149373	0.8342168	339.18192		18.729645	-0.0024224	0.00018814	0.00016297	NaN	36.586	422	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71417			10501	3801;444	6124	6247							0.04080108871517041
IPEQTLLP	8	Unmodified	_IPEQTLLP_					0	0	0		nc|ENSG00000162594|Q5VWK5-7|IL23R;nc|ENSG00000162594|Q5VWK5-5|IL23R;nc|ENSG00000162594|Q5VWK5-6|IL23R;nc|ENSG00000162594|Q5VWK5-2|IL23R;ENSG00000162594|ENST00000347310|IL23R	nc|ENSG00000162594|Q5VWK5-7|IL23R	nc|ENSG00000162594|Q5VWK5-7|IL23R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.5244098798001	1	910.52441	909.517133	2.6424	0.0024059	-1.6808	-0.0015304	0.96159	0.00087555	910.5225550712523	26.046	0.07242	26.035	25.987	26.059	-0.011135	357	49	1.407258	0.028543234	1.4057386	286.1042	0	5.803009						81	4	2	NaN	NaN	NaN	0.75561	1	6106	6106		15.175	0	1	7745.9			10502	4149	6125	6248	8289	8289					0.05875553183000193
IPESDPADL	9	Unmodified	_IPESDPADL_					0	0	0		nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;nc|ENSG00000170873|O43312-2|MTSS1;TATDN1-MTSS1|1|fusion	nc|ENSG00000170873|O43312-4|MTSS1	nc|ENSG00000170873|O43312-4|MTSS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4571181755999	1	956.457118	955.449842	1.3751	0.0013152	0.45967	0.00043966	1.8348	0.0017549	956.457072162326	21.128	0.24077	21.114	21.041	21.282	-0.014004	327	73	1.425088	0.042778492	1.4235686	289.5214	0	8.690887						343	11	3	NaN	NaN	NaN	0.021751	1	7070	7070		69.782	37.329	1	41412			10503	4750	6126	6249	8290	8290					-0.02966521818621004
IPESDPADL	9	Unmodified						0	0	0		nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;nc|ENSG00000170873|O43312-2|MTSS1;TATDN1-MTSS1|1|fusion	nc|ENSG00000170873|O43312-4|MTSS1	nc|ENSG00000170873|O43312-4|MTSS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	956.457118	955.449842	1.4145	0.0013529	-0.07746	-7.4087E-05	1.337	0.0012788	956.4581015632308	21.392	0.072153	21.392	21.32	21.392	0	354	76	1.4090419	0.044567943	1.4090419	286.26144		9.054443	0.1393	-0.00044696	-0.0072634	NaN	69.782	108	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6815			10504	4750	6126	6249							-0.02966521818621004
IPFADALDL	9	Unmodified	_IPFADALDL_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5193245019001	1	974.519325	973.512048	1.4077	0.0013718	1.1072	0.001079	2.5148	0.0024508	974.5208201297755	32.996	0.096424	32.993	32.945	33.042	-0.0024757	237	46	1.4784646	0.02664435	1.4769452	300.2862	0	5.4116516						92	5	2	NaN	NaN	NaN	0.10956	1	7556	7556		34.439	4.8405	1	7280.7			10505	3550	6127	6250	8291	8291					0.024232493203840022
IPFADALDLF	10	Unmodified	_IPFADALDLF_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.5877384181	1	1121.58774	1120.58046	1.1135	0.0012488	0.49462	0.00055476	1.6081	0.0018036	1121.5882980991428	38.564	0.16821	38.564	38.516	38.684	0	66	67	1.579413	0.038853288	1.579413	320.2013	0	7.8769226						175	8	2	NaN	NaN	NaN	0.051632	1	13706	13706		52.624	22.014	1	21983			10506	3550	6128	6251	8292	8292					0.0249949390022266
IPFADALDLF	10	Unmodified	_IPFADALDLF_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.29750744235	2	561.297507	1120.58046	1.7444	0.00097912	-1.7777	-0.00099785	-0.033359	-1.8724E-05	561.2964525084774	38.537	0.096237	38.542	38.517	38.614	0.0040245	1245	31	0.87076044	0.018414915	0.869241	353.06226	0	7.4665833						70	5	2	NaN	NaN	NaN	0.56921	1	13304	13304		16.584	8.3393	1	5435.2			10507	3550	6128	6251	8293	8293					0.0249949390022266
IPFADALDLF	10	Unmodified	_IPFADALDLF_					0	0	0		ENST00000490313.1_1_6:57244770-57299810:+|nuORF;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	ENST00000490313.1_1_6:57244770-57299810:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1121.5877384181	1	1121.58774	1120.58046	1.482	0.0016622	-0.12279	-0.00013772	1.3592	0.0015245	1121.587389286951	38.537	0.1683	38.542	38.493	38.662	0.0040245	66	64	1.579413	0.03708136	1.5778936	320.2013	0	7.5176697						237	8	3	NaN	NaN	NaN	7.9502E-05	1	13305	13305		111.43	56.02	1	25367			10508	3550	6128	6251	8294	8294					0.0249949390022266
IPFDGDLLSM	10	Unmodified	_IPFDGDLLSM_					0	0	0		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.539073666	1	1107.53907	1106.5318	1.236	0.0013689	-1.2819	-0.0014197	-0.045899	-5.0835E-05	1108.5422890163056	33.19	0.28956	33.19	33.045	33.335	0	63	100	1.5811787	0.058307767	1.5811787	320.60876	0	11.822784						374	13	3	NaN	NaN	NaN	0.091497	1	13126	13126		47.136	17.537	1	54933			10509	3236	6129	6252	8295	8295					-0.017207427311632273
IPFDGDLLSM	10	Unmodified	_IPFDGDLLSM_					0	0	0		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1107.539073666	1	1107.53907	1106.5318	0.81402	0.00090156	-0.044126	-4.8871E-05	0.7699	0.00085269	1107.5389735585313	33.213	0.2895	33.21	33.09	33.379	-0.0024757	63	91	1.5811787	0.05299294	1.5796592	320.60876	0	10.745178						410	13	3	NaN	NaN	NaN	0.14619	1	12756	12756		40.154	3.5673	1	54729			10510	3236	6129	6252	8296	8296					-0.017207427311632273
IPFDGDLLSM	10	Oxidation (M)	_IPFDGDLLSM(Oxidation (M))_		IPFDGDLLSM(1)		IPFDGDLLSM(76)	0	0	1		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1123.5339882880999	1	1123.53399	1122.52671	2.1476	0.0024129	-0.59151	-0.00066458	1.5561	0.0017483	1123.533674021596	29.136	0.28958	29.136	29.015	29.305	0	69	109	1.5776473	0.06361854	1.5776473	319.83655	0	12.8974						624	13	3	NaN	NaN	NaN	0.0065408	1	13785	13785		75.698	25.866	1	118070			10511	3236	6129	6253	8297	8297		359			-0.029650465937947956
IPFDGDLLSM	10	Oxidation (M)	_IPFDGDLLSM(Oxidation (M))_		IPFDGDLLSM(1)		IPFDGDLLSM(78)	0	0	1		VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	VPS33A|p.L144F|1|0.44|ENSG00000139719|chr12:122261314-122261314|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1123.5339882880999	1	1123.53399	1122.52671	1.3629	0.0015312	1.4835	0.0016667	2.8463	0.0031979	1123.5366107014431	29.111	0.28959	29.103	29.007	29.296	-0.0077209	69	109	1.5776473	0.06361854	1.5761279	319.83655	0	12.897369						895	13	4	NaN	NaN	NaN	0.004521	1	13372	13372		78.289	44.864	1	132800			10512	3236	6129	6253	8298	8298		359			-0.029650465937947956
IPFGITEEAM	10	Oxidation (M)	_IPFGITEEAM(Oxidation (M))_		IPFGITEEAM(1)		IPFGITEEAM(58)	0	0	1		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1123.5339882880999	1	1123.53399	1122.52671	2.5613	0.0028777	-3.5261	-0.0039617	-0.96487	-0.0010841	1123.5280662278337	25.539	0.072304	25.539	25.515	25.588	0	75	43	1.5741152	0.024730086	1.5741152	319.1205	0	5.0135193						54	4	2	NaN	NaN	NaN	0.033206	1	13783	13783		58.235	41.651	1	4000.3			10513	659	6130	6254	8299	8299		67			-0.029650465937947956
IPFGITEEAM	10	Oxidation (M)	_IPFGITEEAM(Oxidation (M))_		IPFGITEEAM(1)		IPFGITEEAM(45)	0	0	1		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1123.5339882880999	1	1123.53399	1122.52671	2.2095	0.0024824	-2.3994	-0.0026958	-0.18995	-0.00021342	1123.5319545307304	25.563	0.096529	25.552	25.503	25.6	-0.011602	75	43	1.5741152	0.024730086	1.5725957	319.12048	0	5.01355						94	5	2	NaN	NaN	NaN	0.10581	1	13371	13371		45.165	30.152	1	6251.1			10514	659	6130	6254	8300	8300		67			-0.029650465937947956
IPFLMNQCDN	10	Unmodified	_IPFLMNQCDN_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.84758144563335	3	398.847581	1193.52091	1.0168	0.00040555	-9.0747	-0.0036194	-8.0579	-0.0032139	399.1778536076062	29.184	0.1448	29.184	29.112	29.256	0	1479	43	0.72651637	0.025993943	0.72651637	441.53214	0	15.797516						97	7	2	NaN	NaN	NaN	0.5917	1	16246	16246		8.9416	0	1	9450.3	+		10515	11314	6131	6255	8301	8301					-0.06810468377102552
IPFMVDPSF	9	Unmodified	_IPFMVDPSF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.512130634	1	1052.51213	1051.50485	1.5944	0.0016782	1.1141	0.0011726	2.7085	0.0028508	1052.5123636819494	32.682	0.072388	32.679	32.655	32.727	-0.0031052	168	43	1.5192716	0.024808764	1.5177522	308.25473	0	5.0336						69	4	2	NaN	NaN	NaN	0.14301	1	10465	10465		29.598	7.7633	1	5072.9			10516	1897	6132	6256	8302	8302					-0.018838065517002178
IPFMVDPSF	9	Unmodified						0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.51213	1051.50485	1.8419	0.0019386	3.2348	0.0034047	5.0767	0.0053433	1052.516666694619	32.707	0.096519	32.707	32.635	32.732	0	171	64	1.5174994	0.037219167	1.5174994	307.89517		7.551605	0.014162	0.0010007	-0.00012636	NaN	29.598	106	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7788.9			10517	1897	6132	6256							-0.018838065517002178
IPFNFCVFL	9	Unmodified	_IPFNFCVFL_					0	0	0			REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	REV__tr|U7STR4|U7STR4_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01158PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2858885110501	2	550.285889	1098.55722	1.6025	0.00088182	-10.267	-0.0056496	-8.6642	-0.0047678	550.2790385112811	28.074	0.1448	28.074	28.05	28.194	0	1230	88	0.8799654	0.053388774	0.8799654	356.8815	0	21.652496						321	7	4	NaN	NaN	NaN	0.45297	1	12787	12787		11.548	1.4969	1	49615	+		10518	13501	6133	6257	8303	8303					0.011887765819210472
IPFSGALEL	9	Unmodified	_IPFSGALEL_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;TMEM131-OLA1|1|fusion;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5244098797999	1	946.52441	945.517133	1.1464	0.0010851	0.02774	2.6257E-05	1.1741	0.0011114	946.5245293785177	30.97	0.2172	30.97	30.897	31.115	0	297	112	1.4428991	0.06584859	1.4428991	293.1837	0	13.379822						502	10	3	NaN	NaN	NaN	0.032764	1	6969	6969		55.494	8.4535	1	76329			10519	3157	6134	6258	8304	8304					0.042195531829861466
IPFSGALEL	9	Unmodified	_IPFSGALEL_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;TMEM131-OLA1|1|fusion;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5244098797999	1	946.52441	945.517133	1.3675	0.0012944	-0.7427	-0.00070299	0.62484	0.00059142	946.5232217138017	30.945	0.16894	30.94	30.891	31.06	-0.0050716	294	109	1.4446791	0.06405866	1.4431597	293.54538	0	13.016113						488	8	3	NaN	NaN	NaN	0.025843	1	6835	6835		64.55	11.792	1	80693			10520	3157	6134	6258	8305	8305					0.042195531829861466
IPGATAGG	8	Unmodified	_IPGATAGG_					0	0	0		ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3409662058002	1	643.340966	642.33369	2.3127	0.0014878	4.5467	0.0029251	6.8594	0.0044129	643.3438822528352	53.29	0.21601	53.29	53.242	53.458	0	744	91	1.1755381	0.054243326	1.1755381	240.47078	0	11.096146						546	10	4	NaN	NaN	NaN	0.84692	1	1784	1784		1.4396	0	1	231270			10521	6558	6135	6259	8306	8306					-0.0017837580797959163
IPGATAGG	8	Unmodified						0	0	0		ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	643.340966	642.33369	0.56965	0.00036648	6.6377	0.0042703	7.2073	0.0046368	643.3451359763508	53.312	0.35956	53.312	53.24	53.599	-0.00053406	741	139	1.1773466	0.08309305	1.1758271	240.84074		16.997711	0.010897	0.00028296	0.00014458	NaN	1.4396	659	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245450			10522	6558	6135	6259							-0.0017837580797959163
IPGGPNAH	8	Unmodified	_IPGGPNAH_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	762.3893133819	1	762.389313	761.382037	1.255	0.0009568	-9.4391	-0.0071963	-8.1841	-0.0062395	762.3824633916925	29.835	0.19301	29.828	29.803	29.996	-0.0070667	564	52	1.2837118	0.030552626	1.2821923	261.74222	0	6.2295227						219	9	3	NaN	NaN	NaN	0.75682	1	4153	4153		15.013	1.2758	1	26468	+		10523	10334	6136	6260	8307	8307					-0.008198821681048685
IPGLDWGM	8	Unmodified	_IPGLDWGM_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4284010046001	1	888.428401	887.421125	1.0375	0.00092179	-1.292	-0.0011479	-0.25446	-0.00022607	888.4281278737816	31.187	0.096525	31.187	31.163	31.259	0	369	58	1.4001206	0.0339185	1.4001206	284.75876	0	6.898407						103	5	2	NaN	NaN	NaN	0.40747	1	5902	5902		36.036	20.861	1	8866			10524	3034	6137	6261	8308	8308					-0.027089179287372644
IPGLDWGM	8	Unmodified	_IPGLDWGM_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4284010046001	1	888.428401	887.421125	1.2521	0.0011124	-0.1674	-0.00014872	1.0847	0.00096372	888.4278120856693	31.186	0.12067	31.181	31.157	31.277	-0.0050716	375	67	1.3965509	0.039284587	1.3950315	284.0327	0	7.989746						147	6	2	NaN	NaN	NaN	0.40747	1	5780	5780		36.036	15.481	1	10168			10525	3034	6137	6261	8309	8309					-0.027089179287372644
IPGLDWGM	8	Oxidation (M)	_IPGLDWGM(Oxidation (M))_		IPGLDWGM(1)		IPGLDWGM(50)	0	0	1		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4233156267002	1	904.423316	903.416039	1.9214	0.0017378	0.23878	0.00021596	2.1602	0.0019538	904.4235607598582	28.001	0.096497	28.001	27.977	28.074	0	411	85	1.3751161	0.05001986	1.3751161	279.59766	0	10.170349						166	5	3	NaN	NaN	NaN	0.19946	1	6138	6138		50.033	27.906	1	13218			10526	3034	6137	6262	8310	8310		345			-0.039532217913460954
IPGLDWGM	8	Oxidation (M)	_IPGLDWGM(Oxidation (M))_		IPGLDWGM(1)		IPGLDWGM(41)	0	0	1		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4233156267002	1	904.423316	903.416039	1.5612	0.001412	-0.93574	-0.00084631	0.62548	0.0005657	904.4225457924216	28.001	0.12067	27.992	27.968	28.088	-0.0089798	405	79	1.3786905	0.04644203	1.377171	280.32443	0	9.442932						183	6	3	NaN	NaN	NaN	0.30832	1	6011	6011		41.46	19.334	1	15776			10527	3034	6137	6262	8311	8311		345			-0.039532217913460954
IPHDELLI	8	Unmodified	_IPHDELLI_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.2712926918501	2	475.271293	948.528032	1.7984	0.00085474	-2.0851	-0.00099098	-0.28664	-0.00013623	475.2704873455289	23.176	0.14468	23.176	23.128	23.272	0	1347	40	0.8080346	0.024028838	0.8080346	328.35028	0	9.764313						150	7	3	NaN	NaN	NaN	0.65075	1	7049	7049		22.126	2.8416	1	18720	+		10528	9632	6138	6263	8312	8312					0.051709555572983845
IPHDELLI	8	Unmodified	_IPHDELLI_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.2712926918501	2	475.271293	948.528032	1.1709	0.00055651	-2.5767	-0.0012246	-1.4057	-0.00066811	475.2706009790158	23.223	0.096527	23.21	23.162	23.258	-0.013294	1344	43	0.8098828	0.025873005	0.8083634	329.10132	0	10.513702						130	5	3	NaN	NaN	NaN	0.30832	1	6921	6921		41.46	7.7618	1	17465	+		10529	9632	6138	6263	8313	8313					0.051709555572983845
IPHDELLI	8	Unmodified						0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	475.271293	948.528032	1.7984	0.00085474	-2.0851	-0.00099098	-0.28664	-0.00013623	475.2704873455289	23.176	0.14468	23.176	23.128	23.272	0	1347	40	0.8080346	0.024028838	0.8080346	328.35028		9.764313	-0.01717	0.00023663	-0.00016437	NaN	41.46	150	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18720	+		10530	9632	6138	6263							0.051709555572983845
IPHDELLI	8	Unmodified						0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	475.271293	948.528032	1.1709	0.00055651	-2.5767	-0.0012246	-1.4057	-0.00066811	475.2706009790158	23.223	0.096527	23.21	23.162	23.258	-0.013294	1344	43	0.8098828	0.025873005	0.8083634	329.10132		10.513702	0.01717	-0.00023066	0.00016437	NaN	41.46	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17465	+		10531	9632	6138	6263							0.051709555572983845
IPHMDIEAL	9	Unmodified	_IPHMDIEAL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7680598986501	2	519.76806	1037.52157	2.0813	0.0010818	-2.5222	-0.001311	-0.44089	-0.00022916	519.7669753929968	25.009	0.2413	25.009	24.936	25.178	0	1278	94	0.85049206	0.057169557	0.85049206	345.1794	0	23.202759						571	11	4	NaN	NaN	NaN	0.032417	1	10103	10103		55.947	6.1145	1	325040			10532	5805	6139	6264	8314	8314					0.004306943342726299
IPHMDIEAL	9	Unmodified	_IPHMDIEAL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.7680598986501	2	519.76806	1037.52157	1.9227	0.00099937	-2.0281	-0.0010541	-0.10538	-5.4771E-05	519.7671471049737	25.008	0.33772	24.996	24.948	25.286	-0.012011	1278	100	0.85049206	0.06086451	0.8489726	345.1794	0	24.702362						630	15	3	NaN	NaN	NaN	0.049695	1	9894	9894		47.04	10.454	1	309720			10533	5805	6139	6264	8315	8315					0.004306943342726299
IPHMDIEAL	9	Oxidation (M)	_IPHM(Oxidation (M))DIEAL_		IPHM(1)DIEAL		IPHM(62)DIEAL	0	0	1		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7655172097001	2	527.765517	1053.51648	1.647	0.00086921	-1.3337	-0.0007039	0.31323	0.00016531	527.7651860039572	19.948	0.21665	19.934	19.885	20.102	-0.014141	1287	85	0.8449601	0.051622987	0.84344065	342.86603	0	20.94748						654	10	4	NaN	NaN	NaN	0.02781	1	10567	10567		61.977	30.416	1	293820			10534	5805	6139	6265	8316	8316		595			-0.008136095283589384
IPIEDFITP	9	Unmodified	_IPIEDFITP_					0	0	0		ENSG00000185608|ENST00000333130|MRPL40;MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant	ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.5611893166	1	1044.56119	1043.55391	1.3013	0.0013592	-2.0219	-0.002112	-0.72064	-0.00075275	1044.5599660677835	30.848	0.096565	30.842	30.818	30.915	-0.0057545	186	94	1.5086359	0.054925084	1.5071164	306.127	0	11.145172						117	5	2	NaN	NaN	NaN	0.20577	1	10158	10158		24.961	1.6266	1	10689			10535	5423	6140	6266	8317	8317					0.03387805008901523
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.78931826950003	2	494.789318	987.564084	0.89836	0.0004445	0.068536	3.3911E-05	0.9669	0.00047841	494.7887714940816	33.335	0.096539	33.335	33.287	33.383	0	1338	40	0.81357855	0.024015844	0.81357855	330.41638	0	9.7535095						78	5	2	NaN	NaN	NaN	0.11467	1	8142	8142		33.698	2.1373	1	9659.7			10536	2457	6141	6267	8318	8318					0.06980412734139918
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5713600724001	1	988.57136	987.564084	1.8184	0.0017977	-0.075481	-7.4618E-05	1.743	0.001723	988.5715847191343	33.335	0.14481	33.335	33.262	33.407	0	222	217	1.4873441	0.12790024	1.4873441	302.0297	0	25.972229						787	7	4	NaN	NaN	NaN	0.020004	1	8145	8145		71.993	30.533	1	467220			10537	2457	6141	6267	8319	8319					0.06980412734139918
IPIFTDVAL	9	Unmodified	_IPIFTDVAL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5713600724001	1	988.57136	987.564084	1.6115	0.0015931	-0.13255	-0.00013103	1.479	0.0014621	988.5715039188731	33.334	0.16888	33.331	33.259	33.428	-0.0024757	222	223	1.4873441	0.13146698	1.4858247	302.0297	0	26.696503						887	8	4	NaN	NaN	NaN	0.056143	1	7981	7981		44.302	7.7159	1	462080			10538	2457	6141	6267	8320	8320					0.06980412734139918
IPIFTDVAL	9	Unmodified						0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.789318	987.564084	0.44214	0.00021877	-2.0431	-0.0010109	-1.6009	-0.00079212	494.7886186629373	33.334	0.072384	33.331	33.283	33.355	-0.0024757	1332	40	0.8172735	0.024015844	0.81575406	331.917		9.753479	-0.0019035	-0.00082187	0.0010878	NaN	33.698	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10207			10539	2457	6141	6267							0.06980412734139918
IPIGIDKAL	9	Unmodified	_IPIGIDKAL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.2973104771	2	470.29731	938.580068	1.8002	0.00084663	-3.1231	-0.0014688	-1.3229	-0.00062216	470.2958716447788	23.32	0.16883	23.32	23.296	23.465	0	1338	76	0.81357855	0.046179354	0.81357855	330.65314	0	18.768127						367	8	4	NaN	NaN	NaN	0.012861	1	6798	6798		84.233	20.274	1	125380			10540	1135	6142	6268	8321	8321					0.10832118971029558
IPIGIDKAL	9	Unmodified	_IPIGIDKAL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.2973104771	2	470.29731	938.580068	0.93794	0.00044111	-1.8904	-0.00088904	-0.95243	-0.00044793	470.296258220839	23.368	0.16893	23.355	23.307	23.476	-0.013294	1335	73	0.8154261	0.04433459	0.81390667	331.40402	0	18.018372						399	8	4	NaN	NaN	NaN	0.024359	1	6660	6660		66.481	13.857	1	126430			10541	1135	6142	6268	8322	8322					0.10832118971029558
IPIHADPRL	9	Unmodified	_IPIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.3034584875	2	516.303458	1030.59236	2.4641	0.0012722	-1.7014	-0.00087845	0.76271	0.00039379	516.3023170595086	17.717	0.16778	17.717	17.669	17.837	0	1275	73	0.85233563	0.044243515	0.85233563	345.9581	0	17.95819						350	8	4	NaN	NaN	NaN	0.01966	1	9820	9820		72.428	24.947	1	133240			10542	4782	6143	6269	8323	8323					0.07829155434069435
IPIHADPRL	9	Unmodified	_IPIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	344.5380644805333	3	344.538064	1030.59236	2.2583	0.00077807	-1.5525	-0.00053488	0.70585	0.00024319	344.53743336219355	17.81	0.19189	17.796	17.724	17.916	-0.013784	1488	79	0.7209441	0.048274457	0.71942466	438.9349	0	29.391113						356	9	3	NaN	NaN	NaN	0.33629	1	9610	9610		19.336	4.9114	1	79349			10543	4782	6143	6269	8324	8324					0.07829155434069435
IPIHADPRL	9	Unmodified	_IPIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.3034584875	2	516.303458	1030.59236	1.997	0.0010311	0.93292	0.00048167	2.9299	0.0015127	516.3042208374453	17.81	0.19189	17.796	17.724	17.916	-0.013784	1278	67	0.85049206	0.0405609	0.8489726	345.20978	0	16.46347						419	9	5	NaN	NaN	NaN	0.026469	1	9611	9611		63.731	31.278	1	162100			10544	4782	6143	6269	8325	8325					0.07829155434069435
IPIILQSAL	9	Unmodified	_IPIILQSAL_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000466451.1_1_10:12199921-12200143:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.6186446160001	1	967.618645	966.611368	1.0113	0.00097854	0.26368	0.00025514	1.275	0.0012337	967.6188534672855	31.573	0.072432	31.573	31.549	31.621	0	231	55	1.4820169	0.03196478	1.4820169	301.0377	0	6.49292						119	4	3	NaN	NaN	NaN	0.024221	1	7529	7529		66.656	19.175	1	10452			10545	622;693	6144	6270	8326	8326					0.12672692005139652
IPILYEHQL	9	Unmodified	_IPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3187742007001	2	563.318774	1124.623	2.222	0.0012517	-1.3043	-0.00073475	0.91762	0.00051692	563.3179964971298	23.827	0.24101	23.827	23.778	24.019	0	1134	121	0.9387595	0.07345295	0.9387595	380.61682	0	29.78125						539	11	5	NaN	NaN	NaN	7.4733E-08	1	13877	13877		138.77	38.787	1	262360			10546	2147	6145	6271	8327	8327					0.06566889028476908
IPILYEHQL	9	Unmodified	_IPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.3187742007001	2	563.318774	1124.623	1.9974	0.0011252	-1.6505	-0.00092976	0.3469	0.00019542	563.3177972772276	23.85	0.33766	23.837	23.789	24.127	-0.013048	1131	127	0.94059354	0.07713395	0.93907416	381.36044	0	31.273712						668	15	5	NaN	NaN	NaN	0.0042638	1	13450	13450		104.2	14.943	1	279710			10547	2147	6145	6271	8328	8328					0.06566889028476908
IPISIEFVF	9	Unmodified	_IPISIEFVF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.6026602008	1	1064.60266	1063.59538	1.3607	0.0014486	-0.36433	-0.00038786	0.99632	0.0010607	1064.6026231558496	37.362	0.19233	37.362	37.29	37.482	0	120	109	1.5476005	0.06371963	1.5476005	313.95633	0	12.926605						524	9	3	NaN	NaN	NaN	0.023074	1	11297	11297		68.108	27.955	1	59665			10548	2009	6146	6272	8329	8329					0.06612985768242652
IPISIEFVF	9	Unmodified	_IPISIEFVF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.8049683337001	2	532.804968	1063.59538	0.54016	0.0002878	-1.1741	-0.00062555	-0.63392	-0.00033776	532.8043933185138	37.359	0.16844	37.362	37.29	37.458	0.0028229	1269	43	0.8560222	0.025800347	0.85450274	347.3123	0	10.467926						190	8	3	NaN	NaN	NaN	0.062836	1	11034	11034		41.46	14.729	1	19726			10549	2009	6146	6272	8330	8330					0.06612985768242652
IPISIEFVF	9	Unmodified	_IPISIEFVF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.6026602008	1	1064.60266	1063.59538	1.0124	0.0010778	1.0568	0.0011251	2.0692	0.0022029	1064.6037553131716	37.359	0.19248	37.362	37.314	37.506	0.0028229	120	112	1.5476005	0.065472364	1.5460811	313.95633	0	13.282166						455	9	3	NaN	NaN	NaN	0.012648	1	11035	11035		84.879	35.046	1	52027			10550	2009	6146	6272	8331	8331					0.06612985768242652
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.79239227470003	2	490.792392	979.570232	2.0396	0.001001	-2.4959	-0.001225	-0.4563	-0.00022395	490.79100757706834	23.32	0.096464	23.32	23.296	23.393	0	1305	94	0.83389086	0.05715102	0.83389086	338.70374	0	23.213196						187	5	3	NaN	NaN	NaN	0.018156	1	7880	7880		74.332	12.355	1	26976			10551	8062	6147	6273	8332	8332					0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.79239227470003	2	490.792392	979.570232	1.4086	0.00069131	-1.0492	-0.00051493	0.35939	0.00017638	490.79209440132763	23.344	0.12066	23.331	23.307	23.427	-0.013294	1305	88	0.83389086	0.0534696	0.8323714	338.7037	0	21.717896						175	6	3	NaN	NaN	NaN	0.074859	1	7716	7716		39.459	2.8723	1	25368			10552	8062	6147	6273	8333	8333					0.07962930965663872
IPISLHTSL	9	Unmodified						0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.792392	979.570232	1.6752	0.00082217	-3.4386	-0.0016877	-1.7634	-0.00086548	490.790960477398	23.658	0.048162	23.645	23.621	23.669	-0.013048	1293	58	0.84127116	0.03505075	0.8397517	341.70142		14.236664	0.16213	-0.00064867	0.0029304	NaN	74.332	71	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5871.1			10553	8062	6147	6273							0.07962930965663872
IPITETEAYQL	11	Unmodified	_IPITETEAYQL_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.3348181954001	2	639.334818	1276.65508	2.2206	0.0014197	-4.5642	-0.002918	-2.3436	-0.0014983	639.3323464978697	26.167	0.14477	26.167	26.119	26.263	0	1113	67	0.9515937	0.040333807	0.9515937	385.26352	0	16.32959						167	7	2	NaN	NaN	NaN	0.11611	1	18359	18359		38.131	17.618	1	22260			10554	1025	6148	6274	8334	8334					0.027822119209531593
IPLEEGELEL	10	Unmodified	_IPLEEGELEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1141.5986970349002	1	1141.5987	1140.59142	2.7947	0.0031905	-1.0534	-0.0012026	1.7413	0.0019879	1141.5971255822162	29.184	0.28957	29.184	29.087	29.377	0	90	121	1.5652816	0.070724726	1.5652816	317.2686	0	14.335266						987	13	5	NaN	NaN	NaN	0.00033362	1	14475	14475		118.2	45.071	1	387610			10555	1865	6149	6275	8335	8335					0.026748514838800475
IPLEEGELEL	10	Unmodified	_IPLEEGELEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.3029867507502	2	571.302987	1140.59142	1.0398	0.00059403	-0.67638	-0.00038642	0.36339	0.00020761	571.303024157586	29.183	0.2172	29.175	29.103	29.32	-0.0077209	1203	97	0.8965218	0.058851242	0.89500237	363.43005	0	23.857025						464	10	4	NaN	NaN	NaN	0.5544	1	14008	14008		21.835	8.8322	1	106090			10556	1865	6149	6275	8336	8336					0.026748514838800475
IPLEEGELEL	10	Unmodified	_IPLEEGELEL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1141.5986970349002	1	1141.5987	1140.59142	2.0692	0.0023622	-0.25759	-0.00029407	1.8116	0.0020682	1141.5987386358447	29.183	0.33784	29.175	29.103	29.441	-0.0077209	87	121	1.5670487	0.070724726	1.5655292	317.62674	0	14.335266						1039	15	5	NaN	NaN	NaN	1.0378E-05	1	14009	14009		144.65	71.516	1	364320			10557	1865	6149	6275	8337	8337					0.026748514838800475
IPLEEGELEL	10	Unmodified						0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.302987	1140.59142	1.6279	0.00093003	-0.74047	-0.00042303	0.88745	0.000507	571.3027183713976	29.184	0.24134	29.184	29.087	29.329	0	1206	100	0.894683	0.06069368	0.894683	362.68463		24.603882	0.0042565	-5.3416E-05	-0.00015968	NaN	21.835	413	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71807			10558	1865	6149	6275							0.026748514838800475
IPLGEIISF	9	Unmodified	_IPLGEIISF_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5713600724002	1	988.57136	987.564084	1.6913	0.001672	-0.48335	-0.00047782	1.2079	0.0011941	988.5709503957214	34.035	0.3137	34.035	33.914	34.228	0	219	130	1.4891195	0.07640493	1.4891195	302.3902	0	15.515259						600	14	4	NaN	NaN	NaN	0.014046	1	8143	8143		80.639	12.53	1	135630			10559	1491	6150	6276	8338	8338					0.06980412734151287
IPLGEIISF	9	Unmodified	_IPLGEIISF_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5713600724002	1	988.57136	987.564084	1.4692	0.0014524	-0.65397	-0.00064649	0.81519	0.00080587	988.5706245177428	34.033	0.2897	34.032	33.911	34.201	-0.0012474	216	115	1.4908947	0.067495584	1.4893752	302.75067	0	13.706085						579	13	3	NaN	NaN	NaN	0.0040938	1	7979	7979		104.71	24.072	1	138260			10560	1491	6150	6276	8339	8339					0.06980412734151287
IPLHEELL	8	Unmodified	_IPLHEELL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.27911772395004	2	482.279118	962.543683	2.0757	0.001001	-2.8872	-0.0013924	-0.81153	-0.00039138	482.2778987722888	23.007	0.12047	22.993	22.945	23.065	-0.01354	1341	52	0.8117308	0.03140533	0.81021136	329.78363	0	12.759125						157	6	3	NaN	NaN	NaN	0.19946	1	7257	7257		50.033	5.7857	1	20466			10561	4277	6151	6277	8340	8340					0.06091242074330694
IPLMNGEEVD	10	Unmodified	_IPLMNGEEVD_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7657141749501	2	558.765714	1115.51688	1.9678	0.0010995	-7.573	-0.0042315	-5.6052	-0.003132	558.7615630000824	18.772	0.19198	18.772	18.676	18.868	0	1266	58	0.85786515	0.035009086	0.85786515	347.8529	0	14.195709						168	9	3	NaN	NaN	NaN	0.68732	1	13487	13487		8.9191	1.9347	1	14205			10562	667	6152	6278	8341	8341					-0.036262345991644906
IPLMNGEEVD	10	Unmodified						0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.765714	1115.51688	1.68	0.00093874	-7.7387	-0.0043241	-6.0587	-0.0033854	558.7620992599166	18.794	0.16817	18.78	18.731	18.9	-0.014061	1263	49	0.85970795	0.02948296	0.8581885	348.60013		11.954956	0.0036606	-0.00010556	0.00016167	NaN	8.9191	186	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15483			10563	667	6152	6278							-0.036262345991644906
IPLPEELIF	9	Unmodified	_IPLPEELIF_					0	0	0		ENST00000479014.1_1_7:87005212-87011518:+|nuORF;ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-3|CROT	ENST00000479014.1_1_7:87005212-87011518:+|nuORF	ENST00000479014.1_1_7:87005212-87011518:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.6132248871	1	1070.61322	1069.60595	1.6786	0.0017971	3.4777	0.0037232	5.1563	0.0055204	1070.615243960495	36.904	0.048023	36.904	36.88	36.928	0	84	40	1.5688156	0.02296722	1.5688156	318.23724	0	4.6589355						60	3	2	NaN	NaN	NaN	0.16171	1	11564	11564		27.789	0	1	3334.8			10564	327	6153	6279	8342	8342					0.07392968422664126
IPLVSNIFT	9	Unmodified	_IPLVSNIFT_					0	0	0			REV__nc|ENSG00000206561|Q9Y215-7|COLQ	REV__nc|ENSG00000206561|Q9Y215-7|COLQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.29476778815007	2	502.294768	1002.57498	1.2111	0.00060834	-0.63351	-0.00031821	0.57762	0.00029014	502.29455796121033	26.504	0.12064	26.494	26.421	26.542	-0.010645	1284	76	0.8468043	0.046129405	0.8452849	343.8395	0	18.73053						233	6	4	NaN	NaN	NaN	0.35794	1	8532	8532		15.463	1.4211	1	28960	+		10565	11274	6154	6280	8343	8343					0.07379815108436105
IPLYIDDTL	9	Unmodified	_IPLYIDDTL_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5717540028998	1	1062.57175	1061.56448	2.0068	0.0021324	-1.5525	-0.0016497	0.45427	0.00048269	1062.5698446791585	30.415	0.2172	30.415	30.342	30.56	0	108	109	1.5546752	0.06367922	1.5546752	315.3993	0	12.918701						391	10	2	NaN	NaN	NaN	0.00050979	1	11189	11189		115.51	71.207	1	136210			10566	6203	6155	6281	8344	8344					0.03615787663306946
IPLYIDDTL	9	Unmodified	_IPLYIDDTL_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5717540028998	1	1062.57175	1061.56448	1.2895	0.0013701	-0.84012	-0.00089269	0.44933	0.00047745	1062.5707611354724	30.39	0.24131	30.383	30.311	30.552	-0.0064106	105	121	1.5564433	0.070739746	1.5549239	315.758	0	14.351074						449	11	3	NaN	NaN	NaN	0.018156	1	10936	10936		74.332	40.634	1	132700			10567	6203	6155	6281	8345	8345					0.03615787663306946
IPMAKSYVL	9	Unmodified	_IPMAKSYVL_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.29117085420006	2	511.291171	1020.56779	2.0405	0.0010433	-6.6922	-0.0034216	-4.6517	-0.0023784	511.2867051459659	21.874	0.12052	21.874	21.826	21.946	0	1269	70	0.8560222	0.042406917	0.8560222	347.49945	0	17.214966						188	6	4	NaN	NaN	NaN	0.42817	1	9397	9397		12.57	1.0213	1	30245			10568	5745	6156	6282	8346	8346					0.05832759236352558
IPMDDDFQL	9	Unmodified	_IPMDDDFQL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.24715728105	2	547.247157	1092.47976	1.1416	0.00062474	-0.50241	-0.00027494	0.63919	0.00034979	547.2472804933168	28.894	0.28961	28.885	28.789	29.078	-0.0083485	1224	88	0.883646	0.05340606	0.88212657	358.39883	0	21.66101						405	13	4	NaN	NaN	NaN	0.41766	1	12175	12175		13.003	1.8325	1	44128			10569	1267	6157	6283	8347	8347					-0.0627790614494188
IPMDDDFQL	9	Unmodified	_IPMDDDFQL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1093.4870380954999	1	1093.48704	1092.47976	1.2298	0.0013447	0.8541	0.00093394	2.0839	0.0022787	1093.4874071222969	28.894	0.26547	28.885	28.765	29.03	-0.0083485	111	106	1.5529068	0.061900496	1.5513873	314.92612	0	12.553284						400	12	3	NaN	NaN	NaN	0.097143	1	12176	12176		36.235	14.4	1	42087			10570	1267	6157	6283	8348	8348					-0.0627790614494188
IPMDPEHVEL	10	Unmodified	_IPMDPEHVEL_					0	0	0		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.28935644675	2	590.289356	1178.56416	1.672	0.00098695	-0.14344	-8.4669E-05	1.5285	0.00090228	590.2893432433644	23.971	0.2653	23.971	23.851	24.116	0	1215	88	0.8891654	0.05331379	0.8891654	360.30917	0	21.603912						558	12	3	NaN	NaN	NaN	0.34693	1	15781	15781		25.801	1.9505	1	102550			10571	2434	6158	6284	8349	8349					-0.01797955328174794
IPMDPEHVEL	10	Unmodified	_IPMDPEHVEL_					0	0	0		ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	ENSG00000124733|ENST00000244711|MEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.28935644675	2	590.289356	1178.56416	1.388	0.00081929	-0.055776	-3.2924E-05	1.3322	0.00078637	590.2897300642115	23.995	0.21716	23.982	23.91	24.127	-0.013048	1212	88	0.8910048	0.053319573	0.88948536	361.05453	0	21.606262						471	10	3	NaN	NaN	NaN	0.21251	1	15200	15200		34.454	3.2559	1	93200			10572	2434	6158	6284	8350	8350					-0.01797955328174794
IPMEEKRGWYF	11	Unmodified	_IPMEEKRGWYF_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.3581047139502	2	728.358105	1454.70166	1.4822	0.0010796	-1.6751	-0.0012201	-0.19288	-0.00014048	728.3564992141644	22.429	0.14451	22.429	22.356	22.501	0	963	40	1.0429853	0.023699284	1.0429853	421.71085	0	9.582306						114	7	3	NaN	NaN	NaN	0.43114	1	20399	20399		20.936	12.691	1	7332.2			10573	347	6159	6285	8351	8351					-0.007506267287226365
IPMEEKRGWYF	11	Unmodified	_IPMEEKRGWYF_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.3581047139502	2	728.358105	1454.70166	1.5907	0.0011586	-0.55435	-0.00040376	1.0364	0.00075486	728.3588884055877	22.524	0.12061	22.511	22.462	22.583	-0.013733	963	28	1.0429853	0.016407132	1.0414659	421.71085	0	6.633911						90	6	3	NaN	NaN	NaN	0.22707	1	19422	19422		28.236	10.003	1	5803.2			10574	347	6159	6285	8352	8352					-0.007506267287226365
IPMEEKRGWYF	11	Unmodified	_IPMEEKRGWYF_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.9078286315001	3	485.907829	1454.70166	1.4497	0.00070442	-0.055506	-2.6971E-05	1.3942	0.00067745	485.90756940502274	22.524	0.12061	22.511	22.462	22.583	-0.013733	1356	76	0.8024889	0.046239376	0.8009695	486.70303	0	28.043854						142	6	2	NaN	NaN	NaN	0.62612	1	19423	19423		9.0915	1.2875	1	16559			10575	347	6159	6285	8353	8353					-0.007506267287226365
IPMPDFDL	8	Unmodified	_IPMPDFDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4542814041	1	947.454281	946.447005	1.5529	0.0014713	-0.75919	-0.0007193	0.7937	0.000752	947.4535438361829	31.911	0.26548	31.911	31.863	32.128	0	318	136	1.4304334	0.08019686	1.4304334	290.64664	0	16.295044						812	12	5	NaN	NaN	NaN	0.050534	1	6990	6990		78.398	22.45	1	252660			10576	2444	6160	6286	8354	8354					-0.02836068477131448
IPMPDFDL	8	Unmodified	_IPMPDFDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4542814041	1	947.454281	946.447005	1.1113	0.0010529	-0.8481	-0.00080354	0.26315	0.00024933	947.4539510022222	31.91	0.19303	31.906	31.858	32.051	-0.0037613	315	157	1.4322147	0.09268677	1.4306953	291.0086	0	18.832825						773	9	5	NaN	NaN	NaN	0.050534	1	6859	6859		78.398	36.938	1	251110			10577	2444	6160	6286	8355	8355					-0.02836068477131448
IPMPDFDL	8	Oxidation (M)	_IPM(Oxidation (M))PDFDL_		IPM(1)PDFDL		IPM(76)PDFDL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4491960262001	1	963.449196	962.44192	1.5176	0.0014621	-0.73125	-0.00070452	0.78634	0.0007576	963.449006834577	28.266	0.26544	28.257	28.137	28.402	-0.0089779	288	148	1.4482387	0.08729768	1.4467193	294.19434	0	17.733582						801	12	5	NaN	NaN	NaN	0.057516	1	7238	7238		76.264	26.231	1	250080			10578	2444	6160	6287	8356	8356		277			-0.04080372339740279
IPMYLWRRT	9	Unmodified	_IPMYLWRRT_					0	0	0		ENST00000377328.5_1_10:18439815-18825042:+|nuORF;ENST00000324631.11_1_10:18439815-18789762:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3395180303	2	618.339518	1234.66448	0.99073	0.00061261	1.9944	0.0012332	2.9852	0.0018459	618.3408808605059	14.597	0.072052	14.597	14.573	14.645	0	1128	34	0.9424274	0.020172358	0.9424274	381.69128	0	8.169952						54	4	2	NaN	NaN	NaN	0.6762	1	17402	17402		1.2418	0.20181	1	4245.3			10579	6490	6161	6288	8357	8357					0.05653746516145475
IPMYLWRRT	9	Unmodified						0	0	0		ENST00000377328.5_1_10:18439815-18825042:+|nuORF;ENST00000324631.11_1_10:18439815-18789762:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.339518	1234.66448	1.5264	0.00094384	-1.9623	-0.0012134	-0.4359	-0.00026953	618.3378845138017	14.644	0.047889	14.633	14.609	14.657	-0.011219	1128	28	0.9424274	0.016504645	0.94090796	381.69128		6.6845093	0.017748	-0.0026679	-0.00075972	NaN	1.2418	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2912.6			10580	6490	6161	6288							0.05653746516145475
IPNEFYVI	8	Unmodified	_IPNEFYVI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|45|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|45|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5244098798001	1	994.52441	993.517133	1.3881	0.0013805	-2.1786	-0.0021667	-0.79045	-0.00078613	994.5216076265688	30.849	0.096497	30.849	30.825	30.922	0	228	112	1.4837929	0.06567395	1.4837929	301.2837	0	13.335083						125	5	2	NaN	NaN	NaN	0.78264	1	8344	8344		11.548	0.94349	1	9398.2	+		10581	13048	6162	6289	8358	8358					0.020115531830015243
IPNPQERTL	9	Unmodified	_IPNPQERTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2958304206501	2	534.29583	1066.57711	2.1601	0.0011542	-1.6681	-0.00089125	0.49205	0.0002629	534.2950953170496	16.614	0.21592	16.614	16.518	16.734	0	1305	85	0.83389086	0.05162865	0.83389086	338.3209	0	20.946442						397	10	3	NaN	NaN	NaN	0.10206	1	11421	11421		35.523	1.069	1	52424			10582	1139	6163	6290	8359	8359					0.04648243846236255
IPNPQERTL	9	Unmodified	_IPNPQERTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2958304206501	2	534.29583	1066.57711	1.4084	0.00075249	0.44355	0.00023699	1.8519	0.00098948	534.2952319616002	16.611	0.19187	16.598	16.502	16.693	-0.012993	1305	91	0.83389086	0.05531043	0.8323714	338.3209	0	22.440186						369	9	3	NaN	NaN	NaN	0.10206	1	11153	11153		35.523	8.2267	1	49732			10583	1139	6163	6290	8360	8360					0.04648243846236255
IPNPQERTLTL	11	Unmodified	_IPNPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3617016479001	2	641.361702	1280.70885	2.0189	0.0012949	-1.9652	-0.0012604	0.053691	3.4436E-05	641.3606524301058	21.2	0.26493	21.2	21.103	21.368	0	1149	82	0.92958635	0.049535275	0.92958635	376.34085	0	20.05423						676	12	5	NaN	NaN	NaN	0.00012609	1	18440	18440		85.696	43.858	1	280790			10584	1139	6164	6291	8361	8361					0.0797242914331946
IPNPQERTLTL	11	Unmodified	_IPNPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3617016479001	2	641.361702	1280.70885	2.1879	0.0014033	-1.5687	-0.0010061	0.6192	0.00039713	641.3609486646378	21.2	0.26469	21.186	21.114	21.378	-0.014004	1149	76	0.92958635	0.045861065	0.9280669	376.34085	0	18.566742						668	12	5	NaN	NaN	NaN	1.6303E-11	1	17617	17617		111.44	53.038	1	282760			10585	1139	6164	6291	8362	8362					0.0797242914331946
IPPDGDFEL	9	Unmodified	_IPPDGDFEL_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.4778536177001	1	1002.47785	1001.47058	2.0129	0.0020179	0.87383	0.00087599	2.8867	0.0028938	1002.4780553209354	27.326	0.57923	27.326	27.157	27.736	0	240	103	1.4766881	0.060422778	1.4766881	299.80847	0	12.267487						1331	25	4	NaN	NaN	NaN	0.074859	1	8642	8642		39.459	14.498	1	304960			10586	2602	6165	6292	8363	8363					-0.030099314389417486
IPPDGDFEL	9	Unmodified	_IPPDGDFEL_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4778536177001	1	1002.47785	1001.47058	1.7495	0.0017538	0.95515	0.00095752	2.7046	0.0027113	1002.4782117844798	27.301	0.53091	27.291	27.146	27.677	-0.010126	237	109	1.4784646	0.06396353	1.4769452	300.16916	0	12.986328						1165	23	3	NaN	NaN	NaN	0.16171	1	8472	8472		27.789	7.2334	1	297060			10587	2602	6165	6292	8364	8364					-0.030099314389417486
IPPDQQRPI	9	Unmodified	_IPPDQQRPI_					0	0	0		ENST00000475545.1_1_17:10162090-10162312:+|nuORF	ENST00000475545.1_1_17:10162090-10162312:+|nuORF	ENST00000475545.1_1_17:10162090-10162312:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2983731096001	2	532.298373	1062.58219	2.4773	0.0013186	-7.3792	-0.0039279	-4.9019	-0.0026093	532.2949435685034	18.556	0.096006	18.556	18.532	18.628	0	1257	121	0.86339295	0.07365167	0.86339295	350.3071	0	29.882904						193	5	3	NaN	NaN	NaN	0.49672	1	11246	11246		9.746	4.0518	1	24236			10588	7174	6166	6293	8365	8365					0.05340547708851773
IPQAPNGS	8	Unmodified	_IPQAPNGS_					0	0	0		ENST00000496724.1_1_3:38347478-38348849:+|nuORF;ENSG00000144671|ENST00000448498|SLC22A14	ENST00000496724.1_1_3:38347478-38348849:+|nuORF	ENST00000496724.1_1_3:38347478-38348849:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.3995437172001	1	783.399544	782.392267	1.548	0.0012127	-10.066	-0.0078854	-8.5176	-0.0066727	783.3931002682973	31.258	0.14483	31.253	31.181	31.326	-0.0050716	522	49	1.3088527	0.028707981	1.3073332	266.74146	0	5.8506165						81	7	2	NaN	NaN	NaN	0.78967	1	4438	4438		10.605	1.4818	1	5337.3			10589	3486	6167	6294	8366	8366					-0.007633192335219974
IPQLLEAVL	9	Unmodified	_IPQLLEAVL_					0	0	0		nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.6135592381	1	995.613559	994.606283	2.1597	0.0021502	-0.4301	-0.00042821	1.7296	0.001722	995.6131780237076	34.541	0.24128	34.541	34.421	34.662	0	180	79	1.5121819	0.046097875	1.5121819	307.04346	0	9.360016						424	11	4	NaN	NaN	NaN	0.01966	1	8382	8382		72.428	14.229	1	72608			10590	3650	6168	6295	8367	8367					0.1087638814251477
IPQLLEAVL	9	Unmodified						0	0	0		nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	nc|ENSG00000148803|A2VDF0-2|FUOM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	995.613559	994.606283	1.5188	0.0015122	0.77901	0.00077559	2.2979	0.0022878	995.6140808172266	34.54	0.24117	34.539	34.419	34.66	-0.00064468	180	79	1.5121819	0.046092987	1.5106624	307.04346		9.359039	-0.00098432	0.00045834	-0.00075972	NaN	72.428	397	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72460			10591	3650	6168	6295							0.1087638814251477
IPSFETVF	8	Unmodified	_IPSFETVF_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4822107141	1	939.482211	938.474934	0.84562	0.00079445	0.43802	0.00041151	1.2836	0.001206	939.482488024549	30.873	0.096476	30.873	30.849	30.946	0	294	70	1.4446791	0.04095471	1.4446791	293.577	0	8.322479						120	5	2	NaN	NaN	NaN	0.30832	1	6788	6788		41.46	5.4237	1	11043			10592	3727	6169	6296	8368	8368					0.0032357777461129444
IPSFETVF	8	Unmodified	_IPSFETVF_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4822107141	1	939.482211	938.474934	1.63	0.0015314	0.43636	0.00040995	2.0664	0.0019413	939.4820833572809	30.848	0.096565	30.842	30.818	30.915	-0.0057545	291	85	1.446459	0.049860477	1.4449396	293.9387	0	10.132263						158	5	3	NaN	NaN	NaN	0.23746	1	6649	6649		47.04	18.374	1	11622			10593	3727	6169	6296	8369	8369					0.0032357777461129444
IPSPDFSF	8	Unmodified	_IPSPDFSF_					0	0	0		ENSG00000182134|ENST00000368824|TDRKH;nc|ENSG00000182134|Q9Y2W6-3|TDRKH	ENSG00000182134|ENST00000368824|TDRKH	ENSG00000182134|ENST00000368824|TDRKH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.4352605215001	1	909.435261	908.427984	1.8152	0.0016508	2.368	0.0021535	4.1832	0.0038043	909.4349432530585	28.677	0.1689	28.677	28.629	28.798	0	336	49	1.419741	0.028522015	1.419741	288.6472	0	5.7987976						159	8	2	NaN	NaN	NaN	0.27223	1	6204	6204		44.302	12.741	1	16341			10594	5251	6170	6297	8370	8370					-0.02989281776513053
IPSPSLVSL	9	Unmodified	_IPSPSLVSL_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;ENST00000437296.1_1_3:172536577-172538024:+|nuORF	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5400599440001	1	912.54006	911.532783	1.5334	0.0013993	0.12933	0.00011802	1.6628	0.0015173	912.5407576118204	28.483	0.096508	28.475	28.451	28.547	-0.0083504	327	67	1.425088	0.039222002	1.4235686	289.71957	0	7.9737854						105	5	2	NaN	NaN	NaN	0.030669	1	6144	6144		58.235	18.777	1	9549.2			10595	1955	6171	6298	8371	8371					0.07347839700048553
IPSPSLVSL	9	Unmodified						0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;ENST00000437296.1_1_3:172536577-172538024:+|nuORF	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.54006	911.532783	1.8364	0.0016758	-0.098629	-9.0003E-05	1.7378	0.0015858	912.5396645221728	28.484	0.1207	28.484	28.46	28.581	0	330	55	1.4233059	0.032080412	1.4233059	289.35727		6.5219116	0.0045218	-8.301E-05	-0.00013136	NaN	58.235	90	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8560.9			10596	1955	6171	6298							0.07347839700048553
IPSSLVDHL	9	Unmodified	_IPSSLVDHL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.77419952155	2	490.7742	979.533846	1.898	0.00093147	-1.4595	-0.00071626	0.43851	0.00021521	490.7736788874833	22.597	0.16884	22.597	22.525	22.694	0	1287	67	0.8449601	0.040591657	0.8449601	343.19992	0	16.487244						221	8	4	NaN	NaN	NaN	0.025843	1	7873	7873		64.55	27.963	1	41339			10597	490	6172	6299	8372	8372					0.04326054068940266
IPSSLVDHL	9	Unmodified	_IPSSLVDHL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.77419952155	2	490.7742	979.533846	0.95366	0.00046803	-1.4864	-0.00072948	-0.53273	-0.00026145	490.7733215451755	22.621	0.14473	22.607	22.559	22.704	-0.01354	1287	70	0.8449601	0.042439044	0.84344065	343.19992	0	17.23761						265	7	4	NaN	NaN	NaN	0.12328	1	7707	7707		32.453	11.897	1	44525			10598	490	6172	6299	8373	8373					0.04326054068940266
IPSSPTQLTL	10	Unmodified	_IPSSPTQLTL_					0	0	0			REV__NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	REV__NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5935520775	1	1056.59355	1055.58628	1.8503	0.001955	-1.3029	-0.0013766	0.5474	0.00057838	1057.5946933165837	29.184	0.16894	29.184	29.087	29.256	0	135	64	1.5387528	0.03717172	1.5387528	312.19177	0	7.541626						261	8	3	NaN	NaN	NaN	0.24484	1	10909	10909		31.675	0	1	30845			10599	8898	6173	6300	8374	8374					0.06070592411901998
IPSYFDFV	8	Unmodified	_IPSYFDFV_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.4822107141001	1	987.482211	986.474934	2.1404	0.0021136	-0.11381	-0.00011239	2.0266	0.0020012	987.4826571460678	18.842	0.12015	18.828	18.828	18.948	-0.014059	291	43	1.446459	0.024914384	1.4449396	293.73175	0	5.059326						89	6	2	NaN	NaN	NaN	0.77489	1	7926	7926		12.588	0	1	7054.6			10600	2151	6174	6301	8375	8375					-0.018844222253733278
IPTDIISDL	9	Unmodified	_IPTDIISDL_					0	0	0		ENSG00000107201|ENST00000379883|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF;nc|ENSG00000107201|O95786-2|RIGI	ENSG00000107201|ENST00000379883|RIGI	ENSG00000107201|ENST00000379883|RIGI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5404538745	1	986.540454	985.533177	1.995	0.0019682	0.082218	8.1112E-05	2.0772	0.0020493	986.5401031974573	30.415	0.16891	30.415	30.342	30.511	0	231	73	1.4820169	0.042628646	1.4820169	300.95645	0	8.656738						329	8	4	NaN	NaN	NaN	0.04947	1	8071	8071		47.136	7.677	1	63314			10601	1627	6175	6302	8376	8376					0.039832146292383186
IPTDVEVLP	9	Unmodified	_IPTDVEVLP_					0	0	0		ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5455392524001	1	982.545539	981.538263	1.7656	0.0017347	0.012179	1.1966E-05	1.7777	0.0017467	982.5451865169241	26.795	0.16943	26.795	26.722	26.891	0	270	70	1.458913	0.040906787	1.458913	296.28128	0	8.307495						311	8	4	NaN	NaN	NaN	0.056143	1	7944	7944		44.302	12.741	1	42724			10602	3648	6176	6303	8377	8377					0.04675518491865205
IPTDVEVLP	9	Unmodified	_IPTDVEVLP_					0	0	0		ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5455392524001	1	982.545539	981.538263	1.4784	0.0014526	-1.1914	-0.0011706	0.28694	0.00028194	982.5445375952503	26.818	0.19309	26.808	26.735	26.928	-0.010645	267	67	1.4606913	0.03913033	1.4591719	296.64246	0	7.9467163						289	9	3	NaN	NaN	NaN	0.10956	1	7769	7769		34.439	2.8777	1	42661			10603	3648	6176	6303	8378	8378					0.04675518491865205
IPTEEALRL	9	Unmodified	_IPTEEALRL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.30058144755	2	521.300581	1040.58661	1.6321	0.00085082	-0.85267	-0.00044449	0.77944	0.00040632	521.2993744439048	22.429	0.096266	22.429	22.405	22.501	0	1278	67	0.85049206	0.0405609	0.85049206	345.16608	0	16.461365						121	5	2	NaN	NaN	NaN	0.10945	1	10248	10248		34.454	14.005	1	22692			10604	7990	6177	6304	8379	8379					0.06794012131740601
IPTEEALRL	9	Unmodified	_IPTEEALRL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.30058144755	2	521.300581	1040.58661	1.2404	0.00064662	-0.61825	-0.0003223	0.62215	0.00032433	521.2996412164181	22.452	0.1205	22.438	22.414	22.535	-0.013733	1275	52	0.85233563	0.031334043	0.8508162	345.91428	0	12.716705						129	6	3	NaN	NaN	NaN	0.21451	1	10034	10034		24.4	3.8448	1	20754			10605	7990	6177	6304	8380	8380					0.06794012131740601
IPTEQVNEL	9	Unmodified	_IPTEQVNEL_					0	0	0		ENST00000551305.5_1_12:48358091-48359129:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C	ENST00000551305.5_1_12:48358091-48359129:+|nuORF	ENST00000551305.5_1_12:48358091-48359129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5415165069999	1	1042.54152	1041.53424	1.7345	0.0018082	-0.69378	-0.0007233	1.0407	0.0010849	1042.5408692362669	21.585	0.096369	21.585	21.537	21.633	0	213	49	1.4926696	0.028401017	1.4926696	302.89484	0	5.7631836						67	5	2	NaN	NaN	NaN	0.061945	1	10276	10276		41.839	14.542	1	4614.9			10606	2860	6178	6305	8381	8381					0.015134289981460824
IPTKLELTF	9	Unmodified	_IPTKLELTF_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3157001955	2	531.3157	1060.61685	2.1811	0.0011588	-3.0159	-0.0016024	-0.83484	-0.00044356	531.3139380363342	26.263	0.1448	26.263	26.191	26.336	0	1272	61	0.854179	0.03685367	0.854179	346.5769	0	14.9530945						160	7	3	NaN	NaN	NaN	0.061945	1	11148	11148		48.65	13.354	1	22820			10607	898	6179	6306	8382	8382					0.08896370796924202
IPTKLELTF	9	Unmodified	_IPTKLELTF_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3157001955	2	531.3157	1060.61685	1.2077	0.00064168	-0.84653	-0.00044977	0.3612	0.00019191	531.3152338718701	26.287	0.096491	26.276	26.252	26.349	-0.011137	1272	55	0.854179	0.033168256	0.8526596	346.5769	0	13.457794						144	5	3	NaN	NaN	NaN	0.1507	1	10900	10900		28.495	3.9333	1	19898			10608	898	6179	6306	8383	8383					0.08896370796924202
IPTWSLASL	9	Unmodified	_IPTWSLASL_					0	0	0			REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.2791177239499	2	494.279118	986.543683	2.2833	0.0011286	-2.2413	-0.0011078	0.041945	2.0733E-05	494.27797607312016	22.863	0.24095	22.863	22.814	23.055	0	1308	76	0.83204526	0.046134353	0.83204526	337.92102	0	18.736725						532	11	5	NaN	NaN	NaN	0.074859	1	8108	8108		39.459	2.2279	1	211160	+		10609	9835	6180	6307	8384	8384					0.04987242074309961
IPTWSLASL	9	Unmodified						0	0	0			REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.279118	986.543683	2.2833	0.0011286	-2.2413	-0.0011078	0.041945	2.0733E-05	494.27797607312016	22.863	0.24095	22.863	22.814	23.055	0	1308	76	0.83204526	0.046134353	0.83204526	337.92102		18.736725	-0.016974	-0.00056531	0.00075972	NaN	39.459	532	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211160	+		10610	9835	6180	6307							0.04987242074309961
IPTWSLASL	9	Unmodified						0	0	0			REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.279118	986.543683	1.4024	0.00069318	-1.1833	-0.00058488	0.21911	0.0001083	494.27832981866095	22.91	0.24104	22.896	22.824	23.065	-0.01354	1308	79	0.83204526	0.04797715	0.8305259	337.92102		19.485107	0.016974	0.00048062	-0.00075972	NaN	39.459	529	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220390	+		10611	9835	6180	6307							0.04987242074309961
IPVAEGYVI	9	Unmodified	_IPVAEGYVI_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5400599440001	1	960.54006	959.532783	1.148	0.0011027	1.8623	0.0017888	3.0102	0.0028915	960.5419118027942	27.109	0.096525	27.109	27.084	27.181	0	267	52	1.4606913	0.03023231	1.4606913	296.73663	0	6.141632						118	5	2	NaN	NaN	NaN	0.056143	1	7333	7333		44.302	22.176	1	16654			10612	1989	6181	6308	8385	8385					0.05139839700041193
IPVAEGYVI	9	Unmodified	_IPVAEGYVI_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5400599440001	1	960.54006	959.532783	1.2572	0.0012076	0.68452	0.00065751	1.9418	0.0018651	960.5404741619961	27.156	0.12066	27.146	27.074	27.194	-0.010126	264	55	1.4624695	0.032009006	1.46095	297.09787	0	6.5025635						132	6	2	NaN	NaN	NaN	0.23112	1	7183	7183		23.334	5.5355	1	15355			10613	1989	6181	6308	8386	8386					0.05139839700041193
IPVAIFITL	9	Unmodified	_IPVAIFITL_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.6284810208	1	986.628481	985.621205	1.9821	0.0019556	0.22366	0.00022067	2.2058	0.0021763	986.6288194376051	37.795	0.64883	37.795	37.723	38.372	0	201	229	1.4997677	0.13506305	1.4997677	304.56073	0	27.42752						2345	28	5	NaN	NaN	NaN	0.00080915	1	8084	8084		114.61	38.344	1	1605700			10614	3023	6182	6309	8387	8387					0.12781880010504665
IPVAIFITL	9	Unmodified	_IPVAIFITL_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.6284810208	1	986.628481	985.621205	2.5728	0.0025384	-0.63787	-0.00062934	1.935	0.0019091	986.6277414895739	37.792	0.48082	37.795	37.723	38.204	0.0028229	198	205	1.5015416	0.120794535	1.5000222	304.921	0	24.529968						2142	21	5	NaN	NaN	NaN	0.011118	1	7914	7914		89.521	30.076	1	1402700			10615	3023	6182	6309	8388	8388					0.12781880010504665
IPVAIRTQI	9	Unmodified	_IPVAIRTQI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.82148406515006	2	505.821484	1009.62842	2.0847	0.0010545	-1.2431	-0.00062878	0.84161	0.0004257	505.82062156397313	22.983	0.12028	22.983	22.959	23.079	0	1254	64	0.8652351	0.038681686	0.8652351	351.29	0	15.704956						195	6	3	NaN	NaN	NaN	0.31471	1	8978	8978		17.97	0	1	37671			10616	1975	6183	6310	8389	8389					0.12398612610945747
IPVDISDSDMM	11	2 Oxidation (M)	_IPVDISDSDM(Oxidation (M))M(Oxidation (M))_		IPVDISDSDM(1)M(1)		IPVDISDSDM(66)M(66)	0	0	2		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.76505386045	2	627.765054	1253.51555	1.3904	0.00087287	-2.0948	-0.001315	-0.70433	-0.00044216	627.763608037604	21.103	0.12042	21.103	21.055	21.175	0	1179	79	0.9112251	0.047739267	0.9112251	368.9927	0	19.331604						272	6	3	NaN	NaN	NaN	0.01289	1	17862	17862		66.481	47.318	1	27163			10617	4231	6184	6311	8390	8390		456;457			-0.10106236750220887
IPVDISDSDMM	11	2 Oxidation (M)	_IPVDISDSDM(Oxidation (M))M(Oxidation (M))_		IPVDISDSDM(1)M(1)		IPVDISDSDM(48)M(48)	0	0	2		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.76505386045	2	627.765054	1253.51555	0.90263	0.00056664	-0.030071	-1.8877E-05	0.87256	0.00054776	627.7647950693071	21.128	0.14446	21.114	21.041	21.186	-0.014004	1179	76	0.9112251	0.045900643	0.90970564	368.9927	0	18.587067						320	7	4	NaN	NaN	NaN	0.057233	1	17095	17095		48.002	20.706	1	28297			10618	4231	6184	6311	8391	8391		456;457			-0.10106236750220887
IPVEADFLF	9	Unmodified	_IPVEADFLF_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5506246302998	1	1050.55062	1049.54335	1.3347	0.0014022	-0.074849	-7.8633E-05	1.2599	0.0013235	1050.5507174484696	34.275	0.072372	34.274	34.225	34.298	-0.0012474	177	88	1.5139546	0.051376104	1.5124352	307.18338	0	10.424255						174	4	3	NaN	NaN	NaN	0.14301	1	10396	10396		29.598	9.0429	1	16325			10619	4428	6185	6312	8392	8392					0.020558223544639986
IPVEEHFQTL	10	Unmodified	_IPVEEHFQTL_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.8165956525002	2	606.816596	1211.61864	1.5061	0.00091394	-1.2285	-0.00074546	0.27765	0.00016848	606.8160353415432	22.139	0.16887	22.139	22.115	22.284	0	1164	67	0.9204082	0.040403485	0.9204082	372.85168	0	16.367188						283	8	4	NaN	NaN	NaN	0.03713	1	16764	16764		74.737	23.906	1	59727			10620	1515	6186	6313	8393	8393					0.021293798149145005
IPVEEHFQTL	10	Unmodified	_IPVEEHFQTL_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.8165956525002	2	606.816596	1211.61864	0.7688	0.00046652	-0.46643	-0.00028304	0.30237	0.00018348	606.8159946339624	22.163	0.19297	22.149	22.077	22.27	-0.013731	1167	70	0.91857195	0.0422377	0.9170525	372.10785	0	17.11023						270	9	4	NaN	NaN	NaN	0.161	1	16095	16095		46.588	16.552	1	56089			10621	1515	6186	6313	8394	8394					0.021293798149145005
IPVEEKGN	8	Unmodified	_IPVEEKGN_					0	0	0			REV__ENSG00000135482|ENST00000257940|ZC3H10	REV__ENSG00000135482|ENST00000257940|ZC3H10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4676232824002	1	885.467623	884.460347	1.7538	0.001553	2.6448	0.0023419	4.3986	0.0038948	885.4699522455359	21.85	0.096365	21.836	21.836	21.932	-0.013895	381	58	1.3929803	0.033933043	1.3914609	283.32098	0	6.901703						93	5	2	NaN	NaN	NaN	0.57691	1	5743	5743		26.732	0	1	6843.9	+		10622	9622	6187	6314	8395	8395					0.013495056264900995
IPVEGEITI	9	Unmodified	_IPVEGEITI_					0	0	0		ENST00000470730.5_1_X:67718978-67733354:+|nuORF;ENSG00000181704|ENST00000462683|YIPF6	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5455392524001	1	970.545539	969.538263	1.6302	0.0015822	4.2355	0.0041107	5.8657	0.0056929	970.5514161125895	26.795	0.12115	26.795	26.746	26.867	0	255	55	1.4678029	0.03199196	1.4678029	298.13776	0	6.4981384						149	6	3	NaN	NaN	NaN	0.036546	1	7594	7594		52.624	10.84	1	13075			10623	5234	6188	6315	8396	8396					0.05227518491858518
IPVESEVNL	9	Unmodified	_IPVESEVNL_					0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5357028476	1	999.535703	998.528426	1.8538	0.001853	-0.47071	-0.0004705	1.3831	0.0013825	999.5357105747073	24.285	0.24124	24.285	24.237	24.478	0	246	157	1.4731345	0.0925293	1.4731345	299.099	0	18.786743						525	11	4	NaN	NaN	NaN	0.00019594	1	8529	8529		117.07	37.867	1	169910			10624	13712	6189	6316	8397	8397					0.029103304864634083
IPVESEVNL	9	Unmodified	_IPVESEVNL_					0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.5357028476	1	999.535703	998.528426	1.8346	0.0018338	-0.26275	-0.00026262	1.5719	0.0015711	999.5352591454779	24.285	0.19311	24.272	24.224	24.417	-0.012749	246	121	1.4731345	0.07112336	1.4716152	299.099	0	14.440582						474	9	4	NaN	NaN	NaN	0.00065562	1	8346	8346		115.07	25.814	1	152870			10625	13712	6189	6316	8398	8398					0.029103304864634083
IPVGPAEVLA	10	Unmodified	_IPVGPAEVLA_					0	0	0		ENST00000552916.5_1_12:56965569-56983042:+|nuORF	ENST00000552916.5_1_12:56965569-56983042:+|nuORF	ENST00000552916.5_1_12:56965569-56983042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.5666090455	1	965.566609	964.559333	1.1134	0.001075	0.75136	0.00072549	1.8647	0.0018005	965.5672266725733	26.601	0.0965	26.59	26.566	26.663	-0.010645	288	61	1.4482387	0.035588145	1.4467193	294.1852	0	7.229126						161	5	3	NaN	NaN	NaN	0.56921	1	7320	7320		16.584	2.6354	1	20025			10626	7558	6190	6317	8399	8399					0.07563528591367685
IPVHDGYVL	9	Unmodified	_IPVHDGYVL_					0	0	0		ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B	ENSG00000136518|ENST00000429709|ACTL6A	ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.7767422105	2	506.776742	1011.53893	1.9234	0.00097475	-1.3547	-0.00068655	0.5687	0.0002882	506.77599614352965	21.272	0.28891	21.272	21.2	21.488	0	1290	70	0.84311575	0.042420685	0.84311575	342.30072	0	17.222565						551	13	5	NaN	NaN	NaN	0.043119	1	9046	9046		49.833	18.272	1	248730			10627	3022	6191	6318	8400	8400					0.03362357931564475
IPVHDGYVL	9	Unmodified	_IPVHDGYVL_					0	0	0		ENSG00000136518|ENST00000429709|ACTL6A;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B	ENSG00000136518|ENST00000429709|ACTL6A	ENSG00000136518|ENST00000429709|ACTL6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7767422105	2	506.776742	1011.53893	1.5475	0.00078426	-0.63975	-0.00032421	0.90779	0.00046005	506.7764589030954	21.296	0.28875	21.282	21.186	21.475	-0.014006	1290	76	0.84311575	0.046109498	0.8415963	342.30072	0	18.720184						553	13	4	NaN	NaN	NaN	0.062072	1	8874	8874		41.785	10.223	1	257790			10628	3022	6191	6318	8401	8401					0.03362357931564475
IPVHEEFIL	9	Unmodified	_IPVHEEFIL_					0	0	0		nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.8054996499501	2	548.8055	1095.59645	1.7968	0.00098612	0.39244	0.00021537	2.1893	0.0012015	548.8051752563639	25.757	0.096514	25.757	25.732	25.829	0	1218	46	0.8873258	0.02759695	0.8873258	359.87857	0	11.192688						119	5	3	NaN	NaN	NaN	0.31737	1	12663	12663		17.799	3.7574	1	21764			10629	2197	6192	6319	8402	8402					0.052472001371370425
IPVHEEFIL	9	Unmodified						0	0	0		nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.8055	1095.59645	3.1659	0.0017375	-3.712	-0.0020372	-0.54606	-0.00029968	548.8049868408373	25.78	0.072388	25.769	25.721	25.793	-0.0116	1272	28	0.854179	0.016590416	0.8526596	346.43503		6.7286987	0.0061279	-0.0034306	-0.017333	NaN	17.799	38	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2192.4			10630	2197	6192	6319							0.052472001371370425
IPVKDHKL	8	Unmodified	_IPVKDHKL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.29510213914995	2	475.295102	948.575651	1.4772	0.00070212	-0.58857	-0.00027974	0.88866	0.00042238	475.2950798325499	11.956	0.14396	11.956	11.908	12.052	0	1326	40	0.8209676	0.024008036	0.8209676	333.60547	0	9.755829						137	7	3	NaN	NaN	NaN	0.22524	1	7054	7054		48.002	5.6846	1	19170			10631	1865	6193	6320	8403	8403					0.09930654548122675
IPVNDGIEL	9	Unmodified	_IPVNDGIEL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.5251381613001	1	969.525138	968.517862	2.3373	0.002266	-0.89777	-0.00087041	1.4395	0.0013956	969.5236442037742	26.119	0.28961	26.119	26.046	26.336	0	270	64	1.458913	0.037341714	1.458913	296.33646	0	7.5849						310	13	2	NaN	NaN	NaN	0.04743	1	7572	7572		48.002	0.5207	1	41749			10632	2424	6194	6321	8404	8404					0.032343478320512986
IPVNDGIEL	9	Unmodified	_IPVNDGIEL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.5251381613001	1	969.525138	968.517862	1.8579	0.0018013	-1.0953	-0.001062	0.76259	0.00073935	969.523883810147	26.118	0.2172	26.107	26.035	26.252	-0.011137	267	61	1.4606913	0.035565495	1.4591719	296.69766	0	7.2240906						277	10	2	NaN	NaN	NaN	0.048656	1	7422	7422		47.482	16.871	1	43900			10633	2424	6194	6321	8405	8405					0.032343478320512986
IPVPYVEKL	9	Unmodified	_IPVPYVEKL_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.3182428844501	2	529.318243	1056.62193	1.555	0.00082307	-1.4056	-0.00074399	0.14941	7.9086E-05	529.3174498888042	24.454	0.19291	24.454	24.381	24.574	0	1257	58	0.86339295	0.035001516	0.86339295	350.33237	0	14.202301						358	9	3	NaN	NaN	NaN	0.017558	1	10959	10959		75.089	36.958	1	132560			10634	1172	6195	6322	8406	8406					0.09588674659562457
IPVPYVEKL	9	Unmodified	_IPVPYVEKL_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.3182428844501	2	529.318243	1056.62193	1.1455	0.00060633	-0.66127	-0.00035002	0.48422	0.0002563	529.318104124912	24.478	0.21718	24.465	24.368	24.586	-0.012747	1257	67	0.86339295	0.040525913	0.8618735	350.33237	0	16.443878						394	10	4	NaN	NaN	NaN	0.030545	1	10733	10733		58.398	14.095	1	122080			10635	1172	6195	6322	8407	8407					0.09588674659562457
IPVSLVVVV	9	Unmodified	_IPVSLVVVV_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.6128309566001	1	924.612831	923.605554	0.64641	0.00059768	0.36569	0.00033812	1.0121	0.0009358	924.6126070293776	32.658	0.12068	32.655	32.607	32.727	-0.0031052	306	73	1.4375578	0.042751193	1.4360384	292.19785	0	8.689575						208	6	3	NaN	NaN	NaN	0.03623	1	6362	6362		52.758	19.06	1	27771			10636	417	6196	6323	8408	8408					0.14069593493468346
IPVSLVVVV	9	Unmodified						0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	924.612831	923.605554	1.5224	0.0014076	-0.38495	-0.00035593	1.1374	0.0010517	924.6122016191783	32.659	0.096519	32.659	32.635	32.732	0	309	76	1.435777	0.044530153	1.435777	291.83588		9.051178	0.0020926	-0.00028055	-0.00013069	NaN	52.758	200	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26496			10637	417	6196	6323							0.14069593493468346
IPVSTVLLL	9	Unmodified	_IPVSTVLLL_					0	0	0		ENST00000296632.7_1_5:110834693-110834765:-|nuORF	ENST00000296632.7_1_5:110834693-110834765:-|nuORF	ENST00000296632.7_1_5:110834693-110834765:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.6233956429002	1	954.623396	953.616119	1.3473	0.0012861	0.62566	0.00059727	1.9729	0.0018834	954.6236051318489	36.229	0.12058	36.229	36.181	36.302	0	237	88	1.4784646	0.051490545	1.4784646	300.3736	0	10.461121						224	6	3	NaN	NaN	NaN	0.11467	1	7180	7180		33.698	2.1373	1	24480			10638	6399	6197	6324	8409	8409					0.13745576147903193
IPVSVEAFL	9	Unmodified	_IPVSVEAFL_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5557100082	1	974.55571	973.548434	1.6242	0.0015829	-1.0258	-0.00099974	0.59835	0.00058312	974.5558545076781	32.563	0.14479	32.563	32.539	32.683	0	270	82	1.458913	0.048000693	1.458913	296.31497	0	9.749237						276	7	3	NaN	NaN	NaN	0.014046	1	7709	7709		80.639	44.052	1	37358			10639	4239	6198	6325	8410	8410					0.06060126217084871
IPVSVEAFL	9	Unmodified	_IPVSVEAFL_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5557100082	1	974.55571	973.548434	1.1314	0.0011026	-0.90312	-0.00088014	0.22826	0.00022245	974.5548799550346	32.562	0.16895	32.558	32.51	32.679	-0.0031052	267	82	1.4606913	0.048000693	1.4591719	296.67615	0	9.749237						276	8	3	NaN	NaN	NaN	0.025843	1	7564	7564		64.55	32.989	1	35358			10640	4239	6198	6325	8411	8411					0.06060126217084871
IPVTIMDVF	9	Unmodified	_IPVTIMDVF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7831786466	2	517.783179	1033.5518	0.80914	0.00041896	-1.1847	-0.00061342	-0.37556	-0.00019446	517.7826207377203	35.192	0.0965	35.192	35.168	35.265	0	1284	40	0.8468043	0.0239743	0.8468043	343.69998	0	9.730682						65	5	3	NaN	NaN	NaN	0.36492	1	9938	9938		15.175	5.4294	1	4860.8			10641	1057	6199	6326	8412	8412					0.03637052999442858
IPVTIMDVF	9	Unmodified	_IPVTIMDVF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5590808266	1	1034.55908	1033.5518	1.061	0.0010977	-0.38174	-0.00039493	0.67927	0.00070274	1034.5592256847178	35.192	0.24134	35.192	35.096	35.337	0	159	142	1.5245869	0.083291054	1.5245869	309.40277	0	16.90326						814	11	5	NaN	NaN	NaN	0.011942	1	9940	9940		87.021	28.422	1	271860			10642	1057	6199	6326	8413	8413					0.03637052999442858
IPVTIMDVF	9	Unmodified	_IPVTIMDVF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5590808266	1	1034.55908	1033.5518	1.3427	0.0013891	-0.45663	-0.00047241	0.88604	0.00091666	1034.5591134133333	35.191	0.26552	35.191	35.07	35.336	-4.5776E-05	156	139	1.5263584	0.08155787	1.5248389	309.76227	0	16.551514						872	12	5	NaN	NaN	NaN	0.0072287	1	9733	9733		98.041	39.442	1	280700			10643	1057	6199	6326	8414	8414					0.03637052999442858
IPVTIMDVF	9	Oxidation (M)	_IPVTIM(Oxidation (M))DVF_		IPVTIM(1)DVF		IPVTIM(87)DVF	0	0	1		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5539954486999	1	1050.554	1049.54672	1.873	0.0019676	-2.6951	-0.0028313	-0.82214	-0.00086371	1050.5537480471362	30.873	0.21715	30.873	30.753	30.97	0	165	166	1.5210435	0.09743738	1.5210435	308.62173	0	19.770172						797	10	4	NaN	NaN	NaN	0.011942	1	10618	10618		87.021	37.188	1	160620			10644	1057	6199	6327	8415	8415		113			0.023927491368112896
IPVTIMDVF	9	Oxidation (M)	_IPVTIM(Oxidation (M))DVF_		IPVTIM(1)DVF		IPVTIM(47)DVF	0	0	1		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.78063595765	2	525.780636	1049.54672	1.0168	0.0005346	3.5109	0.001846	4.5277	0.0023806	525.7835601129842	30.897	0.16891	30.897	30.825	30.994	0	1278	106	0.85049206	0.064504385	0.85049206	345.1276	0	26.17575						461	8	4	NaN	NaN	NaN	0.049695	1	10621	10621		47.04	20.309	1	87923			10645	1057	6199	6327	8416	8416		113			0.023927491368112896
IPVTIMDVF	9	Oxidation (M)	_IPVTIM(Oxidation (M))DVF_		IPVTIM(1)DVF		IPVTIM(61)DVF	0	0	1		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5539954486999	1	1050.554	1049.54672	1.6113	0.0016928	-2.7363	-0.0028746	-1.1249	-0.0011818	1050.5533690554619	30.872	0.36199	30.866	30.601	30.963	-0.0057545	162	160	1.5228153	0.09388423	1.5212959	308.98123	0	19.049255						672	16	3	NaN	NaN	NaN	0.028349	1	10398	10398		61.271	19.487	1	150970			10646	1057	6199	6327	8417	8417		113			0.023927491368112896
IPVVSSSSG	9	Unmodified	_IPVVSSSSG_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-4|APAF1;ENSG00000120868|ENST00000551964|APAF1;APAF1|p.K189Nfs*8|1|0.17|ENSG00000120868|chr12:98659195-98659195|G/-|frameshift_variant;APAF1|p.A304Qfs*11|1|0.19|ENSG00000120868|chr12:98662760-98662760|G/-|frameshift_variant;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4410741809002	1	832.441074	831.433798	2.0571	0.0017124	3.6901	0.0030718	5.7473	0.0047842	832.44463171426	30.053	0.14485	30.053	30.004	30.149	0	453	55	1.3500742	0.03222072	1.3500742	274.8623	0	6.559845						142	7	2	NaN	NaN	NaN	0.3389	1	5154	5154		16.417	0	1	17270			10647	35	6200	6328	8418	8418					0.011338167351595985
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7951319289001	2	573.795132	1145.57571	1.5711	0.00090147	-2.6412	-0.0015155	-1.0701	-0.00061402	573.7935709691859	32.683	0.14482	32.683	32.611	32.756	0	1197	85	0.9001988	0.05150044	0.9001988	364.90167	0	20.876038						415	7	4	NaN	NaN	NaN	0.062072	1	14644	14644		41.785	13.996	1	145480			10648	1921	6201	6329	8419	8419					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1146.5829873912	1	1146.58299	1145.57571	2.6023	0.0029838	-1.6018	-0.0018366	1.0005	0.0011472	1146.5810625175488	32.683	0.096519	32.683	32.635	32.732	0	60	103	1.582944	0.06006515	1.582944	320.8319	0	12.174011						338	5	3	NaN	NaN	NaN	0.00012056	1	14646	14646		121.66	87.22	1	102270			10649	1921	6201	6329	8420	8420					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7951319289001	2	573.795132	1145.57571	1.0103	0.00057969	-2.7815	-0.001596	-1.7712	-0.0010163	573.7936973299973	32.682	0.12068	32.679	32.607	32.727	-0.0031052	1194	79	0.902037	0.04781151	0.9005176	365.64682	0	19.380707						285	6	3	NaN	NaN	NaN	0.16171	1	14162	14162		27.789	5.9538	1	149180			10650	1921	6201	6329	8421	8421					0.008746097574885425
IPVWDQEFL	9	Unmodified	_IPVWDQEFL_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1146.5829873912	1	1146.58299	1145.57571	1.917	0.0021979	-0.46152	-0.00052917	1.4554	0.0016688	1146.5815945235117	32.682	0.12068	32.679	32.607	32.727	-0.0031052	57	136	1.5847093	0.079544306	1.5831898	321.18967	0	16.12207						351	6	4	NaN	NaN	NaN	0.0021374	1	14164	14164		110.61	76.167	1	89814			10651	1921	6201	6329	8422	8422					0.008746097574885425
IPWGDMASL	9	Unmodified	_IPWGDMASL_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4760794787002	1	989.476079	988.468803	2.3705	0.0023456	-1.5942	-0.0015774	0.77636	0.00076819	989.4744560116054	30.029	0.26553	30.029	29.956	30.222	0	273	70	1.4571344	0.040911198	1.4571344	295.8914	0	8.307587						300	12	3	NaN	NaN	NaN	0.043119	1	8155	8155		49.833	10.915	1	35068			10652	1797	6202	6330	8423	8423					-0.02589263728543756
IPWGDMASL	9	Unmodified	_IPWGDMASL_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.4760794787002	1	989.476079	988.468803	1.3078	0.001294	-0.68581	-0.00067859	0.62197	0.00061542	989.4753192220544	30.028	0.21719	30.021	29.949	30.166	-0.0064106	273	73	1.4571344	0.042678475	1.4556149	295.89136	0	8.666473						248	10	2	NaN	NaN	NaN	0.062072	1	7988	7988		41.785	21.229	1	33484			10653	1797	6202	6330	8424	8424					-0.02589263728543756
IPWPLEEQF	9	Unmodified	_IPWPLEEQF_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7951319289	2	579.795132	1157.57571	1.5324	0.00088849	-2.21	-0.0012813	-0.67755	-0.00039284	579.793819380854	32.732	0.16888	32.732	32.659	32.828	0	1203	88	0.8965218	0.053325295	0.8965218	363.36636	0	21.613129						338	8	3	NaN	NaN	NaN	0.23112	1	15065	15065		23.334	5.5355	1	55303			10654	5044	6203	6331	8425	8425					0.003226097574497544
IPWSYEDSL	9	Unmodified	_IPWSYEDSL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1;ENST00000476250.5_1_2:197737682-197738495:-|nuORF;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;nc|ENSG00000197121|Q75T13-3|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.5149674054999	1	1109.51497	1108.50769	1.7631	0.0019561	-0.22153	-0.00024579	1.5415	0.0017104	1109.5150581815035	27.664	0.19305	27.664	27.615	27.808	0	117	73	1.5493695	0.042466283	1.5493695	314.15204	0	8.610504						228	9	2	NaN	NaN	NaN	0.25448	1	13216	13216		21.835	3.8653	1	21450			10655	5681	6204	6332	8426	8426					-0.04222259893185765
IPWSYEDSL	9	Unmodified	_IPWSYEDSL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1;ENST00000476250.5_1_2:197737682-197738495:-|nuORF;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;nc|ENSG00000197121|Q75T13-3|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1109.5149674054999	1	1109.51497	1108.50769	0.86081	0.00095508	-1.3551	-0.0015035	-0.49426	-0.00054839	1109.5141408381785	27.711	0.24135	27.702	27.629	27.87	-0.009552	117	70	1.5493695	0.040690303	1.54785	314.15204	0	8.250427						216	11	2	NaN	NaN	NaN	0.036546	1	12840	12840		52.624	33.339	1	21185			10656	5681	6204	6332	8427	8427					-0.04222259893185765
IPYAGIDLAV	10	Unmodified	_IPYAGIDLAV_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24;nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23	nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000125648|Q9BV35-4|SLC25A23	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5771737318	1	1031.57717	1030.5699	1.2724	0.0013126	-4.6757	-0.0048233	-3.4033	-0.0035107	1031.571707812898	30.245	0.072382	30.238	30.214	30.287	-0.0064106	159	46	1.5245869	0.026576638	1.5230675	309.41458	0	5.3937073						74	4	2	NaN	NaN	NaN	0.29898	1	9604	9604		27.789	5.9538	1	6242.4			10657	3628;2464	6205	6333	8428	8428					0.05583511245822592
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3031241365001	2	531.303124	1060.5917	0.87772	0.00046633	0.97977	0.00052055	1.8575	0.00098689	531.303737099114	22.332	0.26489	22.318	22.27	22.535	-0.013731	1254	88	0.8652351	0.053417623	0.86371565	351.06293	0	21.673828						384	12	4	NaN	NaN	NaN	0.17328	1	10897	10897		27.046	0.93151	1	88543			10658	2220	6206	6334	8429	8429					0.06382315994369492
IPYGLPPEAA	10	Unmodified	_IPYGLPPEAA_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2765750350001	2	514.276575	1026.5386	1.424	0.00073234	0.33516	0.00017237	1.7592	0.00090471	514.2767575627099	19.274	0.24029	19.26	19.14	19.38	-0.014143	1260	88	0.8615505	0.05347544	0.8600311	349.71655	0	21.706482						379	11	2	NaN	NaN	NaN	0.47601	1	9440	9440		20.449	4.6267	1	67587	+		10659	9421	6207	6335	8430	8430					0.026389382117031346
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8322457167001	2	620.832246	1239.64994	1.7019	0.0010566	-1.2973	-0.00080543	0.40451	0.00025114	620.8316464359999	23.031	0.072115	23.031	23.007	23.079	0	1170	52	0.91673553	0.031215787	0.91673553	371.26935	0	12.64209						126	4	3	NaN	NaN	NaN	0.54514	1	17527	17527		16.858	3.3953	1	15409			10660	2015	6208	6336	8431	8431					0.039699528490018565
IPYHSEVPVSL	11	Unmodified						0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.832246	1239.64994	1.1119	0.0006903	-5.7655	-0.0035794	-4.6536	-0.0028891	620.8284111244889	23.079	0.096306	23.065	23.041	23.138	-0.013294	1167	61	0.91857195	0.03672248	0.9170525	372.0131		14.872284	0.017132	-0.0031814	0.00015849	NaN	16.858	164	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18706			10661	2015	6208	6336							0.039699528490018565
IPYPRPIHL	9	Unmodified	_IPYPRPIHL_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.2220763373667	3	369.222076	1104.6444	1.2883	0.00047567	-1.3937	-0.00051459	-0.10541	-3.8919E-05	369.22175268479515	20.839	0.21678	20.825	20.704	20.921	-0.014086	1440	37	0.7506418	0.022256374	0.7491224	456.61255	0	13.538452						105	10	2	NaN	NaN	NaN	0.094712	1	12711	12711		25.801	13.231	1	8859.6			10662	1397	6209	6337	8432	8432					0.09626318847836046
IPYPRPIHL	9	Unmodified						0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	369.222076	1104.6444	1.3037	0.00048136	-2.9435	-0.0010868	-1.6398	-0.00060545	369.55456108310915	20.742	0.096458	20.742	20.694	20.79	0	1440	46	0.7506418	0.027812898	0.7506418	456.61255		16.918488	-0.041255	-0.00089292	0.00075972	NaN	25.801	100	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8524.3			10663	1397	6209	6337							0.09626318847836046
IPYSESIKEML	11	Oxidation (M)	_IPYSESIKEM(Oxidation (M))L_		IPYSESIKEM(1)L		IPYSESIKEM(50)L	0	0	1		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3365036046	2	663.336504	1324.65845	1.4443	0.00095805	-0.8533	-0.00056602	0.59099	0.00039203	663.3360234116273	21.224	0.12041	21.224	21.2	21.32	0	1095	61	0.9625867	0.03662759	0.9625867	389.563	0	14.823334						264	6	5	NaN	NaN	NaN	0.048526	1	19170	19170		50.211	25.811	1	31280			10664	471	6210	6338	8433	8433		42			0.009111387033044593
IPYSESIKEML	11	Oxidation (M)	_IPYSESIKEM(Oxidation (M))L_		IPYSESIKEM(1)L		IPYSESIKEM(52)L	0	0	1		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.3365036046	2	663.336504	1324.65845	1.6972	0.0011258	-2.2414	-0.0014868	-0.54418	-0.00036097	663.3354403788423	21.224	0.12038	21.21	21.186	21.306	-0.014004	1095	61	0.9625867	0.03662759	0.96106726	389.563	0	14.823334						219	6	4	NaN	NaN	NaN	0.040708	1	18316	18316		52.195	29.077	1	27946			10665	471	6210	6338	8434	8434		42			0.009111387033044593
IPYSPDVQI	9	Unmodified	_IPYSPDVQI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5407882255	1	1031.54079	1030.53351	2.004	0.0020672	-6.1961	-0.0063915	-4.1921	-0.0043243	1031.533686793147	25.684	0.16886	25.672	25.6	25.769	-0.0116	198	103	1.5015416	0.060307503	1.5000222	304.7377	0	12.23941						330	8	2	NaN	NaN	NaN	0.032689	1	9595	9595		55.592	14.635	1	54367			10666	2532	6211	6339	8435	8435					0.01946634349087617
IQAWARMW	8	Unmodified	_IQAWARMW_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5349317615999	1	1061.53493	1060.52766	1.5118	0.0016048	-2.1981	-0.0023334	-0.68637	-0.00072861	1061.5322124964603	32.297	0.14481	32.297	32.225	32.37	0	918	202	1.070307	0.12224758	1.070307	217.13753	0	24.800873						322	7	2	NaN	NaN	NaN	0.84727	1	11122	11122		1.2418	0.16982	1	18345			10667	5332	6212	6340	8436	8436					-0.00018742643578661955
IQDLHRQP	8	Unmodified	_IQDLHRQP_					0	0	0		nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38042946-38043150:+|nuORF;ENST00000484717.5_1_3:38035793-38043423:+|nuORF	nc|ENSG00000136059|O15195-2|VILL	nc|ENSG00000136059|O15195-2|VILL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7750651888	2	503.775065	1005.53558	1.0123	0.00050996	-7.6182	-0.0038378	-6.6059	-0.0033279	503.7711495957289	29.714	0.21712	29.707	29.659	29.876	-0.0070648	1284	58	0.8468043	0.03504312	0.8452849	343.82584	0	14.228516						318	10	4	NaN	NaN	NaN	0.3434	1	8637	8637		39.459	2.8723	1	68970			10668	2991	6213	6341	8437	8437					0.033031078775593414
IQDPDEPIL	9	Unmodified	_IQDPDEPIL_					0	0	0		ENST00000463367.1_1_2:99136511-99137238:+|nuORF;nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	ENST00000463367.1_1_2:99136511-99137238:+|nuORF	ENST00000463367.1_1_2:99136511-99137238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5306174697	1	1039.53062	1038.52334	1.4465	0.0015037	-0.96198	-0.001	0.48449	0.00050364	1039.5304045757134	24.767	0.072397	24.767	24.743	24.816	0	207	100	1.496219	0.05857408	1.496219	303.6266	0	11.886383						220	4	3	NaN	NaN	NaN	0.022185	1	10139	10139		69.233	29.079	1	19001			10669	528	6214	6342	8438	8438					0.005620266238793192
IQDPDEPIL	9	Unmodified	_IQDPDEPIL_					0	0	0		ENST00000463367.1_1_2:99136511-99137238:+|nuORF;nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	ENST00000463367.1_1_2:99136511-99137238:+|nuORF	ENST00000463367.1_1_2:99136511-99137238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5306174697	1	1039.53062	1038.52334	1.2148	0.0012628	-0.77828	-0.00080905	0.43647	0.00045372	1039.5315809176514	24.767	0.096489	24.755	24.731	24.827	-0.012392	210	103	1.4944444	0.060352206	1.4929249	303.26648	0	12.247223						192	5	3	NaN	NaN	NaN	0.084037	1	9934	9934		38.131	16.296	1	16858			10670	528	6214	6342	8439	8439					0.005620266238793192
IQEGRDFLQFQ	11	Unmodified	_IQEGRDFLQFQ_					0	0	0		ENST00000380834.6_1_2:25042707-25042860:+|nuORF	ENST00000380834.6_1_2:25042707-25042860:+|nuORF	ENST00000380834.6_1_2:25042707-25042860:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.8489584134	2	690.848958	1379.68336	1.534	0.0010598	-10.304	-0.0071184	-8.7698	-0.0060586	690.8419707278327	27.495	0.12071	27.495	27.446	27.567	0	1086	85	0.9680805	0.05124539	0.9680805	391.62503	0	20.730713						175	6	2	NaN	NaN	NaN	0.47586	1	19887	19887		19.336	3.5145	1	22519			10671	6737	6215	6343	8440	8440					0.008709546209047403
IQEQWIIG	8	Unmodified	_IQEQWIIG_					0	0	0			REV__ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant	REV__ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5305578902	1	986.530558	985.523281	2.2457	0.0022155	-9.669	-0.0095387	-7.4232	-0.0073232	986.5203020132989	30.053	0.16898	30.053	29.98	30.149	0	246	82	1.4731345	0.04798031	1.4731345	299.15277	0	9.743469						172	8	2	NaN	NaN	NaN	0.73961	1	8067	8067		16.584	0	1	17597	+		10672	8117	6216	6344	8441	8441					0.0299407141451411
IQGPDYVL	8	Unmodified	_IQGPDYVL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4774596871999	1	904.47746	903.470183	2.0834	0.0018844	-0.51902	-0.00046944	1.5644	0.001415	904.4770254917383	25.081	0.21713	25.069	25.045	25.262	-0.012011	351	103	1.4108255	0.060686707	1.409306	286.8581	0	12.339203						372	10	4	NaN	NaN	NaN	0.29743	1	6021	6021		42.318	0.53309	1	54245			10673	2492	6217	6345	8442	8442					0.014586936318437438
IQHCTIPILF	10	Unmodified	_IQHCTIPILF_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8284518175001	2	592.828452	1183.64235	0.78885	0.00046765	-8.9261	-0.0052916	-8.1373	-0.004824	592.8213676177033	28.821	0.21719	28.813	28.692	28.909	-0.0083504	1155	82	0.92591566	0.04956734	0.9243962	375.18262	0	20.084778						241	10	3	NaN	NaN	NaN	0.6772	1	15362	15362		9.6116	1.3668	1	50970	+		10674	10649	6218	6346	8443	8443					0.05787522047717175
IQIQEGLP	8	Unmodified	_IQIQEGLP_					0	0	0			REV__CUBN|p.Q742L|1|0.34|ENSG00000107611|chr10:17084347-17084347|T/A|missense_variant	REV__CUBN|p.Q742L|1|0.34|ENSG00000107611|chr10:17084347-17084347|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.5040087887002	1	897.504009	896.496732	1.8363	0.0016481	-11.195	-0.010048	-9.3588	-0.0083996	897.4940969226229	56.804	0.14416	56.804	56.756	56.9	0	240	133	1.4766881	0.07824409	1.4766881	300.2848	0	15.91095						327	7	2	NaN	NaN	NaN	0.83211	1	6009	6009		4.9097	1.7564	1	34296	+		10675	8299	6219	6347	8444	8444					0.04434382523197655
IQLLSKEHF	9	Unmodified	_IQLLSKEHF_					0	0	0			REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8163986872501	2	557.816399	1113.61824	1.1377	0.00063462	-8.3904	-0.0046803	-7.2527	-0.0040457	557.8115973433368	35.94	0.19283	35.94	35.868	36.061	0	1203	43	0.8965218	0.025739074	0.8965218	363.53522	0	10.437073						182	9	3	NaN	NaN	NaN	0.58159	1	13442	13442		6.2502	0	1	21897	+		10676	12969	6220	6348	8445	8445					0.06598004885699993
IQLLSKEHF	9	Unmodified						0	0	0			REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.816399	1113.61824	1.1377	0.00063462	-8.3904	-0.0046803	-7.2527	-0.0040457	557.8115973433368	35.94	0.19283	35.94	35.868	36.061	0	1203	43	0.8965218	0.025739074	0.8965218	363.53522		10.437073	0.012305	-0.00039621	-0.00015958	NaN	6.2502	182	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21897	+		10677	12969	6220	6348							0.06598004885699993
IQLLSKEHF	9	Unmodified						0	0	0			REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.816399	1113.61824	1.0867	0.00060618	-7.4098	-0.0041333	-6.3231	-0.0035271	558.3140254637635	35.914	0.12054	35.916	35.891	36.012	0.0011024	1200	49	0.89836043	0.029419243	0.896841	364.28076		11.929382	-0.012305	0.00069775	0.00015958	NaN	6.2502	150	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16174	+		10678	12969	6220	6348							0.06598004885699993
IQPVCLPAAT	10	Unmodified	_IQPVCLPAAT_					0	0	0		ENST00000395264.3_1_19:2389783-2414036:+|nuORF;TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant;nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	ENST00000395264.3_1_19:2389783-2414036:+|nuORF	ENST00000395264.3_1_19:2389783-2414036:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5495787727999	1	1012.54958	1011.5423	1.5537	0.0015732	0.56549	0.00057258	2.1192	0.0021458	1012.5498124873213	36.059	0.16875	36.06	35.988	36.157	0.0011024	165	76	1.5210435	0.044275522	1.5195241	308.77213	0	8.987946						277	8	2	NaN	NaN	NaN	0.76548	1	8876	8876		3.5698	0.41644	1	33490			10679	5109	6221	6349	8446	8446					0.03699284713900397
IQQEILVL	8	Unmodified	_IQQEILVL_					0	0	0		ENSG00000112115|ENST00000648244|IL17A	ENSG00000112115|ENST00000648244|IL17A	ENSG00000112115|ENST00000648244|IL17A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.29476778814995	2	478.294768	954.574983	1.4206	0.00067945	-2.4453	-0.0011696	-1.0247	-0.00049013	478.29393584787454	22.5	0.19287	22.486	22.414	22.607	-0.013731	1311	61	0.83019954	0.036925495	0.8286801	337.32663	0	15.003571						328	9	4	NaN	NaN	NaN	0.50906	1	7061	7061		30.61	3.3139	1	102650			10680	1854	6222	6350	8447	8447					0.09587815108409359
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.91531196536664	3	415.915312	1244.72411	1.4167	0.00058922	-1.3714	-0.00057037	0.045328	1.8853E-05	415.91447553225237	16.778	0.14375	16.765	16.693	16.837	-0.013294	1446	37	0.7469324	0.022258759	0.74541295	453.7266	0	13.521179						142	7	2	NaN	NaN	NaN	0.31897	1	16895	16895		26.96	6.2725	1	26496			10681	57	6223	6351	8448	8448					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.36932971475	2	623.36933	1244.72411	1.4018	0.00087386	0.62863	0.00039187	2.0305	0.0012657	623.3704959754023	16.778	0.11982	16.765	16.717	16.837	-0.013294	1134	34	0.9387595	0.020176709	0.93724006	380.17178	0	8.1710205						86	6	2	NaN	NaN	NaN	0.45699	1	16896	16896		20.688	9.1392	1	7597.1			10682	57	6223	6351	8449	8449					0.11153340731175376
IQRTPKIQVY	10	Unmodified						0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.36933	1244.72411	1.688	0.0010523	-0.53066	-0.00033079	1.1574	0.00072146	623.3693206977415	16.662	0.072073	16.662	16.638	16.71	0	1137	43	0.9369253	0.025683582	0.9369253	379.42896		10.401154	-0.051725	-0.00055898	-0.0001574	NaN	20.688	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5100.1			10683	57	6223	6351							0.11153340731175376
IQRTPKIQVYS	11	Unmodified	_IQRTPKIQVYS_					0	0	0		B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF;B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.925988102	3	444.925988	1331.75613	1.2015	0.00053458	-0.75436	-0.00033564	0.44714	0.00019894	444.92593632167205	16.11	0.1439	16.11	16.062	16.206	0	1419	37	0.76361835	0.022237062	0.76361835	463.53033	0	13.498291						109	7	3	NaN	NaN	NaN	0.66679	1	19287	19287		9.6366	1.1804	1	10920			10684	57	6224	6352	8450	8450					0.10352708414325207
IQTLLSLF	8	Unmodified	_IQTLLSLF_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5607953861002	1	934.560795	933.553519	1.634	0.0015271	-0.83558	-0.0007809	0.79846	0.00074621	934.5593993554963	32.537	0.072323	32.534	32.534	32.607	-0.0031052	288	55	1.4482387	0.032039523	1.4467193	294.32278	0	6.511322						67	4	2	NaN	NaN	NaN	0.6117	1	6559	6559		24.562	2.4357	1	4383.3			10685	2189	6225	6353	8451	8451					0.08408430079714435
IQVRYLKII	9	Unmodified	_IQVRYLKII_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.5850146731333	3	382.585015	1144.73321	1.5211	0.00058196	-2.6957	-0.0010313	-1.1745	-0.00044936	382.5842103623778	24.067	0.14476	24.055	24.006	24.151	-0.012749	1464	49	0.73579943	0.029697716	0.73428	447.39114	0	18.05719						131	7	2	NaN	NaN	NaN	0.49999	1	14144	14144		9.6116	2.4813	1	14690			10686	804	6226	6354	8452	8452					0.16663734087501325
IQVRYLKII	9	Unmodified						0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	382.585015	1144.73321	1.3983	0.00053497	-2.2728	-0.00086955	-0.87453	-0.00033458	382.5843690913925	23.947	0.072401	23.947	23.923	23.995	0	1464	55	0.73579943	0.033406258	0.73579943	447.39114		20.312164	-0.053825	0.00015732	0.00075972	NaN	9.6116	128	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13101			10687	804	6226	6354							0.16663734087501325
IRAEVEDNI	9	Unmodified	_IRAEVEDNI_					0	0	0		ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.5207391502	3	353.520739	1057.54039	1.3271	0.00046915	-4.2907	-0.0015168	-2.9636	-0.0010477	353.51886731881956	34.203	0.072365	34.203	34.179	34.252	0	1524	28	0.698637	0.01674217	0.698637	425.21097	0	10.189789						56	4	2	NaN	NaN	NaN	0.59509	1	10990	10990		3.261	0	1	4810			10688	5385	6227	6355	8453	8453					0.01391947229649304
IRAPVGPN	8	Unmodified	_IRAPVGPN_					0	0	0			REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.24286960340004	2	412.24287	822.471186	1.25	0.0005153	0.94327	0.00038886	2.1933	0.00090415	412.24333634160536	26.77	0.097002	26.77	26.746	26.843	0	1374	67	0.791392	0.0407238	0.791392	322.29047	0	16.584564						92	5	2	NaN	NaN	NaN	0.82797	1	5054	5054		5.4659	0	1	9151.9	+		10689	11466	6228	6356	8454	8454					0.05284952791430442
IRDEHLLIKE	10	Unmodified	_IRDEHLLIKE_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.36424433685	2	633.364244	1264.71394	0.73226	0.00046378	-8.2437	-0.0052212	-7.5114	-0.0047575	633.3594294590057	39.093	0.072411	39.093	39.068	39.141	0	1194	115	0.902037	0.06990856	0.902037	365.23685	0	28.306122						174	4	2	NaN	NaN	NaN	0.73444	1	18106	18106		5.6942	0	1	14971	+		10690	10633	6229	6357	8455	8455					0.0921673300592829
IRDEHLLIKE	10	Unmodified						0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	633.364244	1264.71394	0.73226	0.00046378	-8.2437	-0.0052212	-7.5114	-0.0047575	633.3594294590057	39.093	0.072411	39.093	39.068	39.141	0	1194	115	0.902037	0.06990856	0.902037	365.23685		28.306122	0.010748	-0.00047808	0.0062758	NaN	5.6942	174	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14971	+		10691	10633	6229	6357							0.0921673300592829
IRDEHLLIKE	10	Unmodified						0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.364244	1264.71394	1.3621	0.00086271	-7.4737	-0.0047336	-6.1116	-0.0038709	633.3595269925803	39.066	0.07238	39.071	39.047	39.119	0.0046806	1212	121	0.8910048	0.073587954	0.88948536	360.7699		29.79596	-0.010748	0.0004972	-0.0062758	NaN	5.6942	162	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15744	+		10692	10633	6229	6357							0.0921673300592829
IREYHKWRTYF	11	Unmodified	_IREYHKWRTYF_					0	0	0		nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	nc|ENSG00000175727|Q9HAP2-3|MLXIP	nc|ENSG00000175727|Q9HAP2-3|MLXIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.9149670264001	2	799.914967	1597.81538	1.3927	0.001114	-8.469	-0.0067745	-7.0763	-0.0056605	799.9073622847051	31.065	0.12069	31.06	31.012	31.133	-0.0050716	924	67	1.0666667	0.040035367	1.0651473	430.92188	0	16.173828						196	6	4	NaN	NaN	NaN	0.70497	1	19729	19729		7.1304	0.70044	1	16439			10693	4999	6230	6358	8456	8456					0.04038604428501458
IRFYEEEYFK	10	Unmodified	_IRFYEEEYFK_					0	0	0		tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	tr|U7T3J2|U7T3J2_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00296PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.34825992165	2	712.34826	1422.68197	1.4322	0.0010202	6.1886	0.0044085	7.6208	0.0054287	712.3525848039867	26.505	0.072388	26.505	26.481	26.553	0	1029	49	1.0028336	0.029238999	1.0028336	405.56223	0	11.824707						85	4	3	NaN	NaN	NaN	0.5917	1	20236	20236		15.463	7.1851	1	6209			10694	13974	6231	6359	8457	8457					-0.012466794678857696
IRLSRLAYY	9	Unmodified	_IRLSRLAYY_					0	0	0			REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.5608691192667	3	385.560869	1153.66078	1.3651	0.00052635	-5.6775	-0.002189	-4.3124	-0.0016627	385.55887100883496	14.596	0.095807	14.585	14.561	14.657	-0.011219	1506	37	0.70979416	0.022307098	0.7082747	431.5394	0	13.562256						81	5	2	NaN	NaN	NaN	0.41766	1	14450	14450		8.2775	2.3578	1	8500.9	+		10695	8725	6232	6360	8458	8458					0.09009400013951563
IRLSRLAYY	9	Unmodified						0	0	0			REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	385.560869	1153.66078	1.3651	0.00052635	-5.6775	-0.002189	-4.3124	-0.0016627	385.55887100883496	14.596	0.095807	14.585	14.561	14.657	-0.011219	1506	37	0.70979416	0.022307098	0.7082747	431.5394		13.562256	0.0057927	0.0005387	-0.00075972	NaN	8.2775	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8500.9	+		10696	8725	6232	6360							0.09009400013951563
IRMWERASVYE	11	Unmodified	_IRMWERASVYE_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3586360302	2	720.358636	1438.70272	1.2622	0.00090922	5.1183	0.003687	6.3805	0.0045963	720.3615500912532	24.26	0.09655	24.248	24.224	24.32	-0.012749	993	88	1.0247463	0.052947223	1.0232269	414.37967	0	21.4104						168	5	3	NaN	NaN	NaN	0.76654	1	19354	19354		2.5994	0.26131	1	16126	+		10697	9196	6233	6361	8459	8459					0.0009158764014500775
IRRRFEKR	8	Unmodified	_IRRRFEKR_					0	0	0		ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A	ENSG00000119541|ENST00000238497|VPS4B;ENSG00000132612|ENST00000254950|VPS4A	ENSG00000119541|ENST00000238497|VPS4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.5756240696667	3	387.575624	1159.70504	0.71992	0.00027902	8.1005	0.0031396	8.8204	0.0034186	387.57908645789473	31.235	0.048222	31.235	31.211	31.259	0	1479	31	0.72651637	0.018571138	0.72651637	441.6789	0	11.290161						39	3	2	NaN	NaN	NaN	0.8421	1	15143	15143		3.5698	1.4672	1	3598.7			10698	2218;2778	6234	6362	8460	8460					0.13157848950777407
IRSTNEPN	8	Unmodified	_IRSTNEPN_					0	0	0			REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	REV__tr|U7SMB6|U7SMB6_FUSNUdTDP-4-dehydrorhamnosereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01944PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.463934888	1	930.463935	929.456658	1.0603	0.00098654	5.7065	0.0053097	6.7667	0.0062962	930.46811449503	21.2	0.14449	21.186	21.138	21.282	-0.014004	357	70	1.407258	0.04104185	1.4057386	286.01263	0	8.3414						194	7	2	NaN	NaN	NaN	0.63138	1	6456	6456		23.334	1.4994	1	19050	+		10699	13434	6235	6363	8461	8461					-0.010891641473790514
IRTKEVVEY	9	Unmodified	_IRTKEVVEY_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-2|TASOR	REV__nc|ENSG00000163946|Q9UK61-2|TASOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8191383414501	2	568.819138	1135.62372	1.0069	0.00057272	0.38216	0.00021738	1.389	0.00079011	568.8183577453418	31.139	0.0965	31.139	31.091	31.187	0	1218	64	0.8873258	0.03861493	0.8873258	359.72098	0	15.654449						92	5	2	NaN	NaN	NaN	0.66822	1	14307	14307		1.9246	0	1	6829	+		10700	10308	6236	6364	8462	8462					0.06133683677512636
IRVTQRRSL	9	Unmodified	_IRVTQRRSL_					0	0	0			REV__ENST00000498735.1_1_1:70771606-70781164:-|nuORF	REV__ENST00000498735.1_1_1:70771606-70781164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.8516384881001	2	564.851638	1127.68872	1.6658	0.00094094	1.8832	0.0010637	3.549	0.0020047	564.8530711761603	25.274	0.096455	25.262	25.238	25.334	-0.012011	1251	43	0.8670771	0.0257864	0.8655577	351.54184	0	10.454681						113	5	3	NaN	NaN	NaN	0.38313	1	13567	13567		14.425	1.3239	1	15620	+		10701	12513	6237	6365	8463	8463					0.12998722994029777
IRVTQRRSL	9	Unmodified						0	0	0			REV__ENST00000498735.1_1_1:70771606-70781164:-|nuORF	REV__ENST00000498735.1_1_1:70771606-70781164:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.851638	1127.68872	1.6658	0.00094094	1.8832	0.0010637	3.549	0.0020047	564.8530711761603	25.274	0.096455	25.262	25.238	25.334	-0.012011	1251	43	0.8670771	0.0257864	0.8655577	351.54184		10.454681	-0.0061395	0.0010074	0.00016127	NaN	14.425	113	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15620	+		10702	12513	6237	6365							0.12998722994029777
IRWPHLLFL	9	Unmodified	_IRWPHLLFL_					0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8609435766501	2	597.860944	1193.70733	0.56814	0.00033967	-9.6397	-0.0057632	-9.0716	-0.0054235	597.8550529515073	31.139	0.21721	31.139	31.018	31.235	0	1122	70	0.9460945	0.042160332	0.9460945	383.32187	0	17.081787						241	10	3	NaN	NaN	NaN	0.67989	1	16274	16274		0.92586	0.12598	1	23382	+		10703	8238	6238	6366	8464	8464					0.11822884635898845
IRWPHLLFL	9	Unmodified						0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.860944	1193.70733	0.56814	0.00033967	-9.6397	-0.0057632	-9.0716	-0.0054235	597.8550529515073	31.139	0.21721	31.139	31.018	31.235	0	1122	70	0.9460945	0.042160332	0.9460945	383.32187		17.081787	-0.10554	0.00019048	-0.00015691	NaN	0.92586	241	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23382	+		10704	8238	6238	6366							0.11822884635898845
IRWPHLLFL	9	Unmodified						0	0	0			REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	REV__chr8:129752820-129754552|279|12.69|0.25|5.67|-|0|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|45	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.860944	1193.70733	1.1501	0.00068757	-10.255	-0.0061309	-9.1046	-0.0054433	597.8560395792143	31.355	0.072361	31.35	31.326	31.398	-0.0050716	1119	37	0.9479278	0.021995485	0.94640833	384.06464		8.911743	0.10554	-0.0005448	0.00015691	NaN	0.92586	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3488.5	+		10705	8238	6238	6366							0.11822884635898845
IRWVDCYFPFT	11	Unmodified	_IRWVDCYFPFT_					0	0	0		ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.8473728521499	2	723.847373	1445.68019	1.5057	0.0010899	-6.7372	-0.0048767	-5.2315	-0.0037868	723.8418505870327	23.899	0.12058	23.886	23.837	23.958	-0.01305	1050	64	0.9900381	0.038390577	0.9885187	400.32623	0	15.523407						180	6	3	NaN	NaN	NaN	0.62211	1	19396	19396		12.57	6.8756	1	18012			10706	3543	6239	6367	8465	8465					-0.02482011757501823
ISAAHPAA	8	Unmodified	_ISAAHPAA_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088	1	737.394064	736.386788	1.2091	0.00089159	-9.1339	-0.0067353	-7.9248	-0.0058437	737.3878782224739	29.738	0.19301	29.731	29.683	29.876	-0.0070648	603	55	1.2603331	0.032396555	1.2588136	257.12973	0	6.6094666						245	9	3	NaN	NaN	NaN	0.82332	1	3776	3776		6.0903	0	1	27541			10707	7447	6240	6368	8466	8466					0.008050019746519865
ISACGYHI	8	Unmodified	_ISACGYHI_					0	0	0			REV__nc|ENSG00000196266|Q5JRS4|OR10J3	REV__nc|ENSG00000196266|Q5JRS4|OR10J3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.20763819005	2	432.207638	862.400723	1.5362	0.00066394	-1.9383	-0.00083774	-0.40213	-0.0001738	432.20681632037184	23.417	0.096502	23.417	23.393	23.489	0	1323	46	0.8228144	0.027701616	0.8228144	334.83267	0	11.272766						100	5	2	NaN	NaN	NaN	0.84651	1	5556	5556		1.6704	0	1	10544	+		10708	13207	6241	6369	8467	8467					-0.03598088588557857
ISCDVNACVP	10	Unmodified	_ISCDVNACVP_					0	0	0		ENST00000495773.1_1_2:219222681-219225323:+|nuORF	ENST00000495773.1_1_2:219222681-219225323:+|nuORF	ENST00000495773.1_1_2:219222681-219225323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.7280774584	2	510.728077	1019.4416	0.88669	0.00045286	-10.208	-0.0052137	-9.3216	-0.0047608	510.7221335449445	29.28	0.12064	29.272	29.224	29.344	-0.0077229	1314	52	0.8283535	0.031384945	0.8268341	336.2724	0	12.740814						157	6	3	NaN	NaN	NaN	0.62092	1	9146	9146		13.463	0	1	20723			10709	7287	6242	6370	8468	8468					-0.06734115331244084
ISDEVFTVL	9	Unmodified	_ISDEVFTVL_					0	0	0		ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5404538745	1	1022.54045	1021.53318	2.3734	0.0024269	-1.9233	-0.0019667	0.45006	0.00046021	1022.5392939673822	30.294	0.048256	30.294	30.27	30.318	0	162	64	1.5228153	0.037207246	1.5228153	309.09113	0	7.5520935						89	3	2	NaN	NaN	NaN	0.14301	1	9437	9437		29.598	9.0429	1	9659.4			10710	4640	6243	6371	8469	8469					0.02327214629235641
ISDNDSTEN	9	Unmodified	_ISDNDSTEN_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.70162547419994	2	497.701625	993.388698	1.3876	0.0006906	-0.94734	-0.00047149	0.44024	0.00021911	497.70143404999936	27.928	0.12068	27.919	27.846	27.967	-0.009552	1344	31	0.8098828	0.018480718	0.8083634	328.88895	0	7.5049133						57	6	3	NaN	NaN	NaN	0.35794	1	8163	8163		15.463	0.28729	1	3699.5			10711	5691	6244	6372	8470	8470					-0.10826078588706878
ISDNDSTEN	9	Unmodified						0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.701625	993.388698	1.7248	0.00085841	-0.83032	-0.00041325	0.89444	0.00044516	497.7012200904493	27.977	0.16892	27.977	27.833	28.001	0	1344	28	0.8098828	0.01663357	0.8098828	328.88895		6.7547913	0.02929	4.7781E-05	0.00075972	NaN	15.463	81	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6695.6			10712	5691	6244	6372							-0.10826078588706878
ISEDKSISF	9	Unmodified	_ISEDKSISF_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5149674054999	1	1025.51497	1024.50769	1.9197	0.0019687	-11.9	-0.012204	-9.9805	-0.010235	1025.5026577204885	29.305	0.14478	29.305	29.28	29.425	0	174	76	1.5157272	0.04432249	1.5157272	307.64056	0	8.995972						231	7	2	NaN	NaN	NaN	0.48181	1	9548	9548		10.36	1.237	1	33503			10713	4966	6245	6373	8471	8471					-0.0035825989318709617
ISEETCEAK	9	Unmodified	_ISEETCEAK_					0	0	0			REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.22896452789996	2	505.228965	1008.44338	0.62605	0.0003163	-2.1242	-0.0010732	-1.4981	-0.00075689	505.7276107810483	33.502	0.096523	33.501	33.452	33.549	-0.0018463	1332	67	0.8172735	0.04065764	0.81575406	331.82257	0	16.507477						140	5	3	NaN	NaN	NaN	0.41766	1	8737	8737		13.003	0.41496	1	7678.4	+		10714	10098	6246	6374	8472	8472					-0.06050783041644081
ISEETCEAK	9	Unmodified						0	0	0			REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.228965	1008.44338	0.62605	0.0003163	-2.1242	-0.0010732	-1.4981	-0.00075689	505.7276107810483	33.502	0.096523	33.501	33.452	33.549	-0.0018463	1332	67	0.8172735	0.04065764	0.81575406	331.82257		16.507477	-0.0016077	0.00097641	0.00016397	NaN	13.003	140	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7678.4	+		10715	10098	6246	6374							-0.06050783041644081
ISELGSGELLT	11	Unmodified	_ISELGSGELLT_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.8006112373001	2	559.800611	1117.58667	1.4803	0.0008287	-10.587	-0.0059267	-9.1067	-0.005098	560.7948080164211	20.501	0.048025	20.501	20.501	20.549	0	1218	46	0.8873258	0.02759999	0.8873258	359.79068	0	11.191162						72	3	3	NaN	NaN	NaN	0.74155	1	13583	13583		4.7291	0.31598	1	3319.3	+		10716	10560	6247	6375	8473	8473					0.032579673411191834
ISELGSGELLT	11	Unmodified						0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.800611	1117.58667	1.4803	0.0008287	-10.587	-0.0059267	-9.1067	-0.005098	560.7948080164211	20.501	0.048025	20.501	20.501	20.549	0	1218	46	0.8873258	0.02759999	0.8873258	359.79068		11.191162	-0.0050326	0.00082609	0.00075972	NaN	4.7291	72	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3319.3	+		10717	10560	6247	6375							0.032579673411191834
ISFFFFSPDH	10	Unmodified	_ISFFFFSPDH_					0	0	0		ENST00000525438.5_1_11:46139644-46141386:-|nuORF;ENST00000527782.5_1_11:46139576-46141386:-|nuORF;ENST00000533757.5_1_11:46105825-46141386:-|nuORF	ENST00000525438.5_1_11:46139644-46141386:-|nuORF	ENST00000525438.5_1_11:46139644-46141386:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2927564154501	2	622.292756	1242.57096	1.8682	0.0011626	2.1728	0.0013521	4.041	0.0025147	622.2936795845459	17.354	0.07201	17.34	17.316	17.388	-0.013569	1092	31	0.9644182	0.018315732	0.96289873	390.57025	0	7.417511						52	4	2	NaN	NaN	NaN	0.76548	1	16848	16848		3.5698	0.35817	1	3626.3			10718	7421	6248	6376	8474	8474					-0.04062274385296405
ISFKGTTE	8	Unmodified	_ISFKGTTE_					0	0	0			REV__ENST00000370558.8_1_1:87200820-87207911:+|nuORF	REV__ENST00000370558.8_1_1:87200820-87207911:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.73200035585	2	441.732	881.449448	2.2435	0.00099102	0.16644	7.352E-05	2.4099	0.0010645	441.7329661284778	26.722	0.048246	26.711	26.687	26.735	-0.010645	1428	25	0.7580582	0.014829516	0.75653875	308.37662	0	6.0326233						32	3	2	NaN	NaN	NaN	0.78264	1	5700	5700		11.548	0.94349	1	1821.1	+		10719	11888	6249	6377	8475	8475					0.003981032521892303
ISGFYKSTHST	11	Unmodified	_ISGFYKSTHST_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.303852418	2	614.303852	1226.59315	2.2948	0.0014097	-1.1693	-0.0007183	1.1256	0.00069144	614.3029623365295	15.939	0.11966	15.927	15.855	15.975	-0.012611	1143	37	0.9332562	0.022016883	0.93173677	378.00436	0	8.917664						50	6	2	NaN	NaN	NaN	0.69656	1	16460	16460		7.6826	0.094995	1	3330.5	+		10720	9531	6250	6378	8476	8476					-0.011080947075242875
ISGTGSNL	8	Unmodified	_ISGTGSNL_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.383559302	1	748.383559	747.376283	1.771	0.0013254	4.7015	0.0035185	6.4725	0.0048439	748.3869817850083	28.725	0.36206	28.725	28.677	29.039	0	567	130	1.2819146	0.07737124	1.2819146	261.4624	0	15.780853						702	16	3	NaN	NaN	NaN	0.39717	1	4001	4001		36.586	5.0254	1	181160			10721	4014	6251	6379	8477	8477					-0.007510254704357067
ISHLQERTQK	10	Unmodified	_ISHLQERTQK_					0	0	0			REV__nc|ENSG00000137699|Q14134-2|TRIM29	REV__nc|ENSG00000137699|Q14134-2|TRIM29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.8983209860333	3	413.898321	1238.67313	0.98901	0.00040935	-9.7067	-0.0040176	-8.7177	-0.0036082	413.89395646396645	12.894	0.11991	12.885	12.789	12.909	-0.00947	1461	31	0.7376554	0.018557012	0.73613596	448.11526	0	11.273132						81	6	2	NaN	NaN	NaN	0.63781	1	16763	16763		12.307	0.15719	1	9238.5	+		10722	9692	6252	6380	8478	8478					0.06334391686323215
ISIDFIVSK	9	Unmodified	_ISIDFIVSK_					0	0	0		tr|U7SYY6|U7SYY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00866PE=4SV=1	tr|U7SYY6|U7SYY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00866PE=4SV=1	tr|U7SYY6|U7SYY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00866PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5928237960001	1	1021.59282	1020.58555	1.1084	0.0011323	7.8625	0.0080323	8.9709	0.0091646	1021.5999554344037	35.408	0.12056	35.409	35.409	35.529	0.00053024	90	58	1.5652816	0.033571124	1.5637622	317.71454	0	6.8141174						139	6	2	NaN	NaN	NaN	0.12945	1	9221	9221		31.561	11.006	1	10572			10723	13924	6253	6381	8479	8479					0.07607797762852897
ISITSQPLGPR	11	Unmodified	_ISITSQPLGPR_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.22766709610005	3	390.227667	1167.66117	1.6406	0.0006402	1.2237	0.00047751	2.8642	0.0011177	390.56241623988274	22.863	0.14471	22.863	22.79	22.935	0	1389	70	0.7821392	0.042591035	0.7821392	475.4563	0	25.890717						136	7	2	NaN	NaN	NaN	0.71564	1	15414	15414		2.789	0.1896	1	20942			10724	6096	6254	6382	8480	8480					0.08404774943142002
ISIYHTFFL	9	Unmodified	_ISIYHTFFL_					0	0	0			REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8080423389001	2	570.808042	1139.60153	1.5642	0.00089286	-2.2986	-0.0013121	-0.73442	-0.00041921	570.8070848109043	27.567	0.072409	27.567	27.543	27.615	0	1212	67	0.8910048	0.040451527	0.8910048	361.19733	0	16.398315						187	4	5	NaN	NaN	NaN	0.36492	1	14441	14441		15.175	2.1725	1	24879	+		10725	11962	6255	6383	8481	8481					0.03731503999756569
ISLAETIFI	9	Unmodified	_ISLAETIFI_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5819247587	1	1006.58192	1005.57465	2.0478	0.0020613	-1.5478	-0.001558	0.50004	0.00050333	1006.5808070267291	36.541	0.048248	36.543	36.494	36.543	0.0016785	174	52	1.5157272	0.030126572	1.5142077	307.71744	0	6.1161804						67	3	2	NaN	NaN	NaN	0.36492	1	8651	8651		15.175	3.6269	1	4792.5			10726	4504	6256	6384	8482	8482					0.0720839538855671
ISLAETIFI	9	Unmodified						0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1006.58192	1005.57465	1.5842	0.0015947	-1.9947	-0.0020078	-0.41045	-0.00041315	1006.5793667752373	36.543	0.048256	36.543	36.495	36.543	0	168	55	1.5192716	0.031903744	1.5192716	308.437		6.4769897	0.0001651	-0.00025163	0.002532	NaN	15.175	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5063.7			10727	4504	6256	6384							0.0720839538855671
ISLEENLSN	9	Unmodified	_ISLEENLSN_					0	0	0		tr|U7T494|U7T494_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00302PE=4SV=1	tr|U7T494|U7T494_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00302PE=4SV=1	tr|U7T494|U7T494_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00302PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	340.17322797796663	3	340.173228	1017.49785	1.2831	0.00043649	3.523	0.0011984	4.8061	0.0016349	340.17460166058396	12.508	0.12	12.508	12.484	12.604	0	1506	34	0.70979416	0.020447075	0.70979416	432.21957	0	12.450958						77	6	2	NaN	NaN	NaN	0.33202	1	9262	9262		16.858	2.9095	1	7256.4			10728	13983	6257	6385	8483	8483					-0.010194478985681599
ISLGASRF	8	Unmodified	_ISLGASRF_					0	0	0		TAS2R41|p.Q59K|1|0.38|ENSG00000221855|chr7:143478047-143478047|C/A|missense_variant;TAS2R41|p.K185Nfs*19|1|0.14|ENSG00000221855|chr7:143478425-143478425|A/-|frameshift_variant;ENSG00000221855|ENST00000408916|TAS2R41	TAS2R41|p.Q59K|1|0.38|ENSG00000221855|chr7:143478047-143478047|C/A|missense_variant	TAS2R41|p.Q59K|1|0.38|ENSG00000221855|chr7:143478047-143478047|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.74270242790004	2	425.742702	849.470852	1.0255	0.00043661	0.35994	0.00015324	1.3855	0.00058985	425.7431603647229	26.673	0.0965	26.663	26.639	26.735	-0.010643	1389	37	0.7821392	0.022212982	0.78061974	318.3563	0	9.041412						81	5	2	NaN	NaN	NaN	0.76406	1	5248	5248		14.042	0	1	7093.7			10729	6008	6258	6386	8484	8484					0.04009533071575788
ISLGILFSLKY	11	Unmodified	_ISLGILFSLKY_					0	0	0		ENST00000508157.3_1_5:70790975-70807035:+|nuORF	ENST00000508157.3_1_5:70790975-70807035:+|nuORF	ENST00000508157.3_1_5:70790975-70807035:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3788317685501	2	627.378832	1252.74311	1.5103	0.00094752	6.3592	0.0039897	7.8695	0.0049372	627.3839844680018	39.742	0.67398	39.742	39.646	40.32	0	1191	124	0.90387505	0.07543987	0.90387505	366.0188	0	30.54895						1536	29	7	NaN	NaN	NaN	0.71564	1	17855	17855		6.4299	0	1	1396700			10730	7340	6259	6387	8485	8485					0.126848773022175
ISMFPGMHNKW	11	Unmodified	_ISMFPGMHNKW_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3204679974001	2	674.320468	1346.62638	1.7026	0.0011481	-5.2445	-0.0035365	-3.5419	-0.0023884	674.3162403036762	18.916	0.071999	18.916	18.868	18.94	0	1110	37	0.95342636	0.021990776	0.95342636	385.79077	0	8.898254						73	4	3	NaN	NaN	NaN	0.7072	1	19497	19497		6.9844	1.9675	1	5786.4	+		10731	9283	6260	6388	8486	8486					-0.03306507460820285
ISMFPGMHNKW	11	Unmodified						0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	674.320468	1346.62638	1.7026	0.0011481	-5.2445	-0.0035365	-3.5419	-0.0023884	674.3162403036762	18.916	0.071999	18.916	18.868	18.94	0	1110	37	0.95342636	0.021990776	0.95342636	385.79077		8.898254	0	0	0	NaN	6.9844	73	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5786.4	+		10732	9283	6260	6388							-0.03306507460820285
ISNERSPLSHG	11	Unmodified	_ISNERSPLSHG_					0	0	0		ENST00000567299.1_1_19:9629420-9629708:+|nuORF	ENST00000567299.1_1_19:9629420-9629708:+|nuORF	ENST00000567299.1_1_19:9629420-9629708:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.80455090975	2	598.804551	1195.59455	0.84354	0.00050512	-4.3156	-0.0025842	-3.472	-0.0020791	598.8026947801387	32.9	0.09655	32.9	32.828	32.925	0	1194	40	0.902037	0.023894131	0.902037	365.4648	0	9.680817						114	5	3	NaN	NaN	NaN	0.7072	1	16331	16331		6.9844	0	1	8322.8			10733	7632	6261	6389	8487	8487					0.004575393812274342
ISNERSPLSHG	11	Unmodified						0	0	0		ENST00000567299.1_1_19:9629420-9629708:+|nuORF	ENST00000567299.1_1_19:9629420-9629708:+|nuORF	ENST00000567299.1_1_19:9629420-9629708:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.804551	1195.59455	1.0297	0.0006166	-5.4749	-0.0032784	-4.4452	-0.0026618	598.8005234032297	33.044	0.14463	33.042	32.969	33.114	-0.0024757	1203	34	0.8965218	0.020229042	0.89500237	363.23032		8.195892	0.070568	-0.00081235	-0.0035173	NaN	6.9844	65	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4677.5			10734	7632	6261	6389							0.004575393812274342
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3082095144001	2	533.30821	1064.60187	1.9393	0.0010342	-0.4058	-0.00021642	1.5335	0.00081781	533.3081852702516	27.06	0.24133	27.06	26.988	27.229	0	1224	70	0.883646	0.042324543	0.883646	358.51572	0	17.172028						522	11	5	NaN	NaN	NaN	0.10945	1	11345	11345		34.454	4.8557	1	232210			10735	4878	6262	6390	8488	8488					0.07214923719629951
ISPILVLIL	9	Unmodified	_ISPILVLIL_					0	0	0			REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.6754312134002	1	980.675431	979.668155	1.5459	0.001516	-0.49357	-0.00048403	1.0523	0.001032	980.676521377205	42.243	0.071976	42.243	42.219	42.291	0	165	34	1.5210435	0.019489527	1.5210435	308.90717	0	3.95813						50	4	2	NaN	NaN	NaN	0.043119	1	7885	7885		49.833	0	1	2681	+		10736	13582	6263	6391	8489	8489					0.17750739561665796
ISPIVDSLV	9	Unmodified	_ISPIVDSLV_					0	0	0			REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303	1	942.550625	941.543348	0.94986	0.00089529	-0.66344	-0.00062533	0.28642	0.00026997	942.5502292825387	31.548	0.096544	31.544	31.519	31.616	-0.0044174	264	97	1.4624695	0.056862473	1.46095	297.1782	0	11.554596						178	5	2	NaN	NaN	NaN	0.31737	1	6714	6714		17.799	2.6236	1	18108	+		10737	9361	6264	6392	8490	8490					0.07023822354472031
ISQPQEPEL	9	Unmodified	_ISQPQEPEL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5258664428	1	1040.52587	1039.51859	1.7035	0.0017725	-0.11851	-0.00012331	1.585	0.0016492	1040.5255896973026	20.79	0.31303	20.79	20.742	21.055	0	249	112	1.4713576	0.06579256	1.4713576	298.57773	0	13.351074						625	14	5	NaN	NaN	NaN	0.0032273	1	10190	10190		107.32	23.793	1	234920			10738	2181	6265	6393	8491	8491					0.0004114248110909102
ISQPQEPEL	9	Unmodified	_ISQPQEPEL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.7665714547	2	520.766571	1039.51859	1.09	0.00056762	-1.1741	-0.00061144	-0.084143	-4.3819E-05	520.765607194341	20.815	0.14444	20.801	20.728	20.873	-0.014088	1305	121	0.83389086	0.07379508	0.8323714	338.43314	0	29.949615						532	7	3	NaN	NaN	NaN	0.030545	1	9976	9976		58.398	2.8062	1	82412			10739	2181	6265	6393	8492	8492					0.0004114248110909102
ISQPQEPEL	9	Unmodified	_ISQPQEPEL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000474427.6_1_6:134495091-134495238:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5258664428	1	1040.52587	1039.51859	1.3372	0.0013914	0.10555	0.00010983	1.4428	0.0015012	1040.5257652302562	20.815	0.2648	20.801	20.752	21.017	-0.014088	249	127	1.4713576	0.07469547	1.4698381	298.57773	0	15.157684						680	12	5	NaN	NaN	NaN	2.164E-05	1	9977	9977		127.69	25.19	1	234360			10740	2181	6265	6393	8493	8493					0.0004114248110909102
ISRWPPPN	8	Unmodified	_ISRWPPPN_					0	0	0		ENST00000505700.1_1_12:54393582-54393729:-|nuORF	ENST00000505700.1_1_12:54393582-54393729:-|nuORF	ENST00000505700.1_1_12:54393582-54393729:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.76142649729996	2	483.761426	965.5083	1.8356	0.00088798	-6.525	-0.0031565	-4.6894	-0.0022686	483.7584269351865	15.774	0.11996	15.774	15.726	15.846	0	1326	37	0.8209676	0.022162437	0.8209676	333.5219	0	9.003601						80	6	2	NaN	NaN	NaN	0.76406	1	7504	7504		14.042	1.4537	1	7960.6			10741	7330	6266	6394	8494	8494					0.024166243371723795
ISSGSSNY	8	Unmodified	_ISSGSSNY_					0	0	0		PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.68250747429994	2	407.682507	813.350462	1.3476	0.00054938	-9.9292	-0.004048	-8.5817	-0.0034986	407.6781976603261	19.324	0.16798	19.324	19.3	19.468	0	1395	34	0.7784366	0.020365238	0.7784366	317.07272	0	8.2951355						104	8	2	NaN	NaN	NaN	0.82797	1	4927	4927		5.4659	0.55612	1	8602.9			10742	8088	6267	6395	8495	8495					-0.06367919712715775
ISSGSSNY	8	Unmodified						0	0	0		PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	PABPC3|p.T48S|1|0.09|ENSG00000151846|chr13:25096341-25096341|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	407.682507	813.350462	1.6708	0.00068114	-8.7457	-0.0035655	-7.075	-0.0028843	407.6794831525332	19.37	0.096117	19.356	19.308	19.404	-0.014141	1395	34	0.7784366	0.020365238	0.77691716	317.07272		8.2951355	0.015979	0.00075705	-0.00075972	NaN	5.4659	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5555.4			10743	8088	6267	6395							-0.06367919712715775
ISSLVKPR	8	Unmodified	_ISSLVKPR_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.5672777475	1	899.567278	898.560001	0.10405	9.3601E-05	-3.7421	-0.0033662	-3.638	-0.0032726	899.5649745104607	55.698	0.072338	55.698	55.698	55.77	-0.00059128	174	49	1.5157272	0.028365016	1.5142077	308.21265	0	5.7678223						73	4	2	NaN	NaN	NaN	0.83211	1	5930	5930		4.9097	0.49665	1	5421.3	+		10744	9937	6268	6396	8496	8496					0.10666368031081674
ISTEHDPVL	9	Unmodified	_ISTEHDPVL_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.76128911154996	2	505.761289	1009.50803	2.1764	0.0011007	-0.31888	-0.00016128	1.8575	0.00093947	505.7606051437465	17.861	0.19191	17.861	17.813	18.005	0	1299	67	0.8375814	0.04060924	0.8375814	340.063	0	16.48758						297	9	3	NaN	NaN	NaN	0.13602	1	8956	8956		30.61	5.6491	1	47538			10745	2983	6269	6397	8497	8497					0.0036515982666287528
ISTEHDPVL	9	Unmodified						0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.761289	1009.50803	1.735	0.00087751	-0.41003	-0.00020738	1.325	0.00067013	505.7606992451414	17.882	0.14394	17.868	17.796	17.94	-0.013786	1299	79	0.8375814	0.04799795	0.83606195	340.063		19.487427	0.0035175	-4.193E-05	-0.00075972	NaN	30.61	258	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48374			10746	2983	6269	6397							0.0036515982666287528
ISVPYWTRMF	10	Unmodified	_ISVPYWTRMF_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.88999792033326	3	433.889998	1298.64816	1.3948	0.00060517	-5.1594	-0.0022386	-3.7646	-0.0016334	433.8878484054828	16.206	0.19201	16.206	16.11	16.302	0	1416	28	0.76547134	0.016676903	0.76547134	464.7766	0	10.125824						86	9	2	NaN	NaN	NaN	0.77585	1	18752	18752		1.5256	0.19443	1	6455.6	+		10747	10397	6270	6398	8498	8498					0.010786205593831255
ISYATAVL	8	Unmodified	_ISYATAVL_					0	0	0		tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.4716460278001	1	837.471646	836.46437	1.6945	0.0014191	0.027174	2.2757E-05	1.7217	0.0014419	837.4714841798248	27.422	0.16899	27.422	27.374	27.543	0	414	112	1.3733286	0.066192865	1.3733286	279.56937	0	13.474884						400	8	4	NaN	NaN	NaN	0.40747	1	5225	5225		36.036	0	1	79454			10748	13927	6271	6399	8499	8499					0.03959595120193171
ITAHIIIA	8	Unmodified	_ITAHIIIA_					0	0	0			REV__ENSG00000174599|ENST00000310754|TRAM1L1	REV__ENSG00000174599|ENST00000310754|TRAM1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.5349149866001	1	851.534915	850.527639	-0.073322	-6.2436E-05	1.1267	0.00095943	1.0534	0.000897	851.5364987555193	56.923	0.023991	56.922	56.922	56.946	-0.00056458	360	37	1.405474	0.02140963	1.4039545	286.0367	0	4.3572083						57	2	3	NaN	NaN	NaN	0.84692	1	5263	5263		1.4396	0	1	3972.9	+		10749	10702	6272	6400	8500	8500					0.09639580628095246
ITAKGGLG	8	Unmodified	_ITAKGGLG_					0	0	0			REV__nc|ENSG00000122367|O75112-6|LDB3	REV__nc|ENSG00000122367|O75112-6|LDB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.4301155641001	1	716.430116	715.422839	-0.40602	-0.00029089	2.7737	0.0019872	2.3677	0.0016963	716.4321212958032	55.722	0.072338	55.722	55.698	55.77	-0.00059128	489	64	1.3285799	0.03765297	1.3270605	271.19833	0	7.6860046						114	4	2	NaN	NaN	NaN	0.84692	1	3451	3451		1.4396	0	1	7799.3	+		10750	13112	6273	6401	8501	8501					0.05374459151528299
ITCLWFHSFFG	11	Unmodified	_ITCLWFHSFFG_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3235336151	2	679.323534	1356.63251	1.6109	0.0010943	-8.2929	-0.0056335	-6.6819	-0.0045392	679.3179341771951	19.997	0.14422	19.997	19.948	20.093	0	1086	49	0.9680805	0.02930522	0.9680805	391.69104	0	11.857056						108	7	2	NaN	NaN	NaN	0.64343	1	19628	19628		11.17	0.81017	1	10205	+		10751	9120	6274	6402	8502	8502					-0.031536659576659076
ITCLWFHSFFG	11	Unmodified						0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	679.323534	1356.63251	1.6109	0.0010943	-8.2929	-0.0056335	-6.6819	-0.0045392	679.3179341771951	19.997	0.14422	19.997	19.948	20.093	0	1086	49	0.9680805	0.02930522	0.9680805	391.69104		11.857056	0.0073911	-0.00084009	0.0025909	NaN	11.17	108	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10205	+		10752	9120	6274	6402							-0.031536659576659076
ITCLWFHSFFG	11	Unmodified						0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	679.323534	1356.63251	1.5073	0.0010239	-7.1856	-0.0048813	-5.6783	-0.0038574	679.3184932376014	19.996	0.096302	19.982	19.958	20.054	-0.014141	1092	43	0.9644182	0.025636494	0.96289873	390.20923		10.372681	-0.0073911	0.00066429	-0.0025909	NaN	11.17	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8783.7	+		10753	9120	6274	6402							-0.031536659576659076
ITDILDLTF	9	Unmodified	_ITDILDLTF_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.78951523475	2	525.789515	1049.56448	1.0941	0.00057526	-1.5779	-0.00082966	-0.48384	-0.0002544	525.7879525861266	35.82	0.19288	35.82	35.747	35.94	0	1299	49	0.8375814	0.029518008	0.8375814	339.88843	0	11.9783325						282	9	4	NaN	NaN	NaN	0.059222	1	10624	10624		49.833	13.246	1	45692			10754	297	6275	6403	8503	8503					0.04167787663322997
ITDPEVVFV	9	Unmodified	_ITDPEVVFV_					0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5455392524001	1	1018.54554	1017.53826	1.627	0.0016572	0.017195	1.7514E-05	1.6442	0.0016747	1018.5466037240006	29.087	0.14479	29.079	29.031	29.175	-0.0077229	237	76	1.4784646	0.044383764	1.4769452	300.1048	0	9.009186						104	7	2	NaN	NaN	NaN	0.089764	1	9100	9100		37.302	15.467	1	11116			10755	2590	6276	6404	8504	8504					0.030195184918625273
ITDPFQALN	9	Unmodified	_ITDPFQALN_					0	0	0			REV__EPHA4|p.M674Ifs*5|1|0.12|ENSG00000116106|chr2:221442881-221442882|-/A|frameshift_variant	REV__EPHA4|p.M674Ifs*5|1|0.12|ENSG00000116106|chr2:221442881-221442882|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5203871343999	1	1018.52039	1017.51311	2.3817	0.0024258	-2.9179	-0.0029719	-0.53617	-0.0005461	1018.5193373026548	30.391	0.12065	30.391	30.366	30.487	0	168	103	1.5192716	0.06028819	1.5192716	308.3881	0	12.237579						288	6	4	NaN	NaN	NaN	0.27608	1	9268	9268		20.449	0	1	41600	+		10756	9210	6277	6405	8505	8505					0.005054636892737108
ITELSTILEE	10	Unmodified	_ITELSTILEE_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.3082690939001	2	574.308269	1146.60199	2.0509	0.0011779	2.0153	0.0011574	4.0662	0.0023353	574.8117569310087	25.805	0.2413	25.805	25.636	25.877	0	1194	61	0.902037	0.036762178	0.902037	365.64288	0	14.901642						245	11	3	NaN	NaN	NaN	0.33935	1	14690	14690		26.115	0	1	27636			10757	3224	6278	6406	8506	8506					0.03454834138301521
ITENDHVLL	9	Unmodified	_ITENDHVLL_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2823886944001	2	527.282389	1052.55022	1.2593	0.00066401	-1.4775	-0.00077904	-0.21814	-0.00011502	527.2814477330237	21.464	0.19288	21.45	21.402	21.595	-0.014006	1278	70	0.85049206	0.042416096	0.8489726	345.11484	0	17.2117						258	9	3	NaN	NaN	NaN	0.14787	1	10519	10519		28.896	5.778	1	44538			10758	3098	6279	6407	8507	8507					0.026051352350577872
ITEQFESL	8	Unmodified	_ITEQFESL_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4778536177001	1	966.477854	965.470577	1.1597	0.0011209	0.054335	5.2513E-05	1.2141	0.0011734	966.4778640170944	29.111	0.07238	29.103	29.079	29.151	-0.0077209	276	58	1.4553556	0.033799767	1.4538362	295.62695	0	6.865753						101	4	2	NaN	NaN	NaN	0.3434	1	7345	7345		39.459	9.8604	1	9422.4			10759	775	6280	6408	8508	8508					-0.01353931438939071
ITEQFESL	8	Unmodified						0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	966.477854	965.470577	1.5064	0.0014559	1.181	0.0011414	2.6874	0.0025973	966.4790724676732	29.087	0.04826	29.087	29.087	29.136	0	276	55	1.4553556	0.032022476	1.4553556	295.62695		6.50473	-0.0078101	0.0007453	0.00075972	NaN	39.459	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7760.3			10760	775	6280	6408							-0.01353931438939071
ITFAEGPNVQV	11	Unmodified	_ITFAEGPNVQV_					0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8087706204	2	587.808771	1173.60299	1.9738	0.0011602	4.8323	0.0028405	6.8061	0.0040007	587.8113559866581	23.538	0.072273	23.538	23.513	23.586	0	1215	31	0.8891654	0.018395007	0.8891654	360.32678	0	7.4544067						51	4	2	NaN	NaN	NaN	0.61402	1	15607	15607		13.101	3.978	1	5036.1	+		10761	8883	6281	6409	8509	8509					0.02313093297834712
ITFAEGPNVQV	11	Unmodified						0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	587.808771	1173.60299	1.9738	0.0011602	4.8323	0.0028405	6.8061	0.0040007	587.8113559866581	23.538	0.072273	23.538	23.513	23.586	0	1215	31	0.8891654	0.018395007	0.8891654	360.32678		7.4544067	-0.0053186	-0.0012493	0.00075972	NaN	13.101	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5036.1	+		10762	8883	6281	6409							0.02313093297834712
ITFAEGPNVQV	11	Unmodified						0	0	0			REV__ENSG00000102531|ENST00000492622|FNDC3A	REV__ENSG00000102531|ENST00000492622|FNDC3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.808771	1173.60299	2.1096	0.0012401	7.5544	0.0044405	9.664	0.0056806	587.8148838965903	23.561	0.072306	23.548	23.5	23.572	-0.013048	1215	31	0.8891654	0.018395007	0.88764596	360.32678		7.4544067	0.0053186	0.0019508	-0.00075972	NaN	13.101	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4955.5	+		10763	8883	6281	6409							0.02313093297834712
ITGFSLHSKQ	10	Unmodified	_ITGFSLHSKQ_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.30365545275	2	559.303655	1116.59276	0.90396	0.00050559	4.9529	0.0027702	5.8569	0.0032758	559.3065902442754	31.307	0.14478	31.302	31.253	31.398	-0.0050716	1200	52	0.89836043	0.031249523	0.896841	364.26883	0	12.671112						153	7	3	NaN	NaN	NaN	0.56921	1	13150	13150		16.584	2.8471	1	15769			10764	7188	6282	6410	8510	8510					0.03912530363277256
ITGMTFAG	8	Unmodified	_ITGMTFAG_					0	0	0			REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19673915275007	2	399.196739	796.378925	1.025	0.00040919	-3.9106	-0.0015611	-2.8855	-0.0011519	399.1949735025384	29.112	0.1448	29.112	29.063	29.208	0	1401	43	0.77473325	0.025929153	0.77473325	315.67563	0	10.565186						114	7	2	NaN	NaN	NaN	0.8439	1	4707	4707		3.1533	1.2287	1	12292	+		10765	9588	6283	6411	8511	8511					-0.027408933371020794
ITGMTFAG	8	Unmodified						0	0	0			REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.196739	796.378925	1.025	0.00040919	-3.9106	-0.0015611	-2.8855	-0.0011519	399.1949735025384	29.112	0.1448	29.112	29.063	29.208	0	1401	43	0.77473325	0.025929153	0.77473325	315.67563		10.565186	-0.0078051	0.0004246	0.00075972	NaN	3.1533	114	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12292	+		10766	9588	6283	6411							-0.027408933371020794
ITGMTFAG	8	Unmodified						0	0	0			REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	REV__ENST00000478378.5_1_1:201924654-201931951:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	399.196739	796.378925	1.0574	0.00042212	-5.012	-0.0020008	-3.9545	-0.0015786	399.19485550058016	29.135	0.14482	29.127	29.103	29.248	-0.0077229	1401	40	0.77473325	0.024075806	0.7732138	315.67563		9.810028	0.0078051	-0.00045474	-0.00075972	NaN	3.1533	125	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13198	+		10767	9588	6283	6411							-0.027408933371020794
ITGSSSGG	8	Unmodified	_ITGSSSGG_					0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3100600079002	1	665.31006	664.302784	-0.053419	-3.554E-05	7.5213	0.005004	7.4679	0.0049685	665.316574908431	55.362	0.16788	55.362	55.29	55.458	-0.00061798	573	70	1.2783196	0.04134488	1.2768002	261.3158	0	8.451752						199	8	2	NaN	NaN	NaN	0.84887	1	2342	2342		0.32989	0	1	14555	+		10768	10370	6284	6412	8512	8512					-0.042795739128791865
ITGVVITL	8	Unmodified	_ITGVVITL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.5236815983002	1	815.523682	814.516405	1.3329	0.001087	-1.6502	-0.0013458	-0.31731	-0.00025878	815.5225161221791	29.642	0.0965	29.635	29.61	29.707	-0.0070648	450	52	1.3518641	0.030429125	1.3503447	275.31967	0	6.197174						114	5	2	NaN	NaN	NaN	0.45125	1	4847	4847		33.698	5.0318	1	14523			10769	4380	6285	6413	8513	8513					0.10172758533963133
ITGVVITL	8	Unmodified	_ITGVVITL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.5236815983002	1	815.523682	814.516405	2.1702	0.0017698	0.35205	0.00028711	2.5222	0.0020569	815.5243201812456	29.328	0.33781	29.32	29.248	29.586	-0.0077209	447	238	1.3536539	0.14176881	1.3521345	275.68414	0	28.872513						1198	15	5	NaN	NaN	NaN	0.021034	1	4850	4850		91.429	15.165	1	1003500			10770	4380	6285	6413	8514	8514					0.10172758533963133
ITHDPILHADK	11	Unmodified	_ITHDPILHADK_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.34076924055	2	630.340769	1258.66699	1.7972	0.0011328	-6.2409	-0.0039339	-4.4437	-0.002801	630.33835237185	19.228	0.26394	19.228	19.108	19.372	0	1095	70	0.9625867	0.042142153	0.9625867	389.77377	0	17.064331						332	12	4	NaN	NaN	NaN	0.095947	1	17974	17974		40.006	2.775	1	77327	+		10771	11345	6286	6414	8515	8515					0.04799873454794579
ITHSPCPRPQ	10	Unmodified	_ITHSPCPRPQ_					0	0	0		ENST00000409086.7_1_2:196521491-196521611:+|nuORF	ENST00000409086.7_1_2:196521491-196521611:+|nuORF	ENST00000409086.7_1_2:196521491-196521611:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2874824598	2	568.287482	1134.56041	2.2381	0.0012719	7.0013	0.0039787	9.2394	0.0052506	568.2910556603108	23.152	0.14468	23.152	23.103	23.248	0	1218	67	0.8873258	0.04046899	0.8873258	359.725	0	16.40625						150	7	2	NaN	NaN	NaN	0.65442	1	14265	14265		11.17	2.88	1	38684			10772	6853	6287	6415	8516	8516					-0.0014858031138373917
ITHSPCPRPQ	10	Unmodified						0	0	0		ENST00000409086.7_1_2:196521491-196521611:+|nuORF	ENST00000409086.7_1_2:196521491-196521611:+|nuORF	ENST00000409086.7_1_2:196521491-196521611:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.287482	1134.56041	1.4973	0.00085092	2.9753	0.0016908	4.4726	0.0025417	568.2870981749105	23.199	0.096521	23.186	23.114	23.21	-0.013294	1218	73	0.8873258	0.0441432	0.8858064	359.725		17.895813	0.01716	-0.0027148	-0.00075972	NaN	11.17	162	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36189			10773	6853	6287	6415							-0.0014858031138373917
ITIMGPGG	8	Unmodified	_ITIMGPGG_					0	0	0			REV__ENSG00000099783|ENST00000325495|HNRNPM	REV__ENSG00000099783|ENST00000325495|HNRNPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.3912872168003	1	745.391287	744.384011	1.6762	0.0012494	6.0287	0.0044937	7.7049	0.0057431	745.3955060098195	27.977	0.072388	27.977	27.953	28.026	0	546	46	1.294491	0.026943803	1.294491	264.04663	0	5.495941						68	4	2	NaN	NaN	NaN	0.84207	1	3974	3974		3.5732	0	1	5074.9	+		10774	8774	6288	6416	8517	8517					0.0015941052550942914
ITIMGPGG	8	Unmodified						0	0	0			REV__ENSG00000099783|ENST00000325495|HNRNPM	REV__ENSG00000099783|ENST00000325495|HNRNPM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.391287	744.384011	1.6762	0.0012494	6.0287	0.0044937	7.7049	0.0057431	745.3955060098195	27.977	0.072388	27.977	27.953	28.026	0	546	46	1.294491	0.026943803	1.294491	264.04663		5.495941	0.0048797	-0.001006	0.00075972	NaN	3.5732	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5074.9	+		10775	8774	6288	6416							0.0015941052550942914
ITIMGPGG	8	Unmodified						0	0	0			REV__ENSG00000099783|ENST00000325495|HNRNPM	REV__ENSG00000099783|ENST00000325495|HNRNPM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	745.391287	744.384011	1.5364	0.0011452	8.9572	0.0066766	10.494	0.0078218	745.3982446393434	27.977	0.072405	27.968	27.943	28.016	-0.0089798	546	52	1.294491	0.030536413	1.2929716	264.04663		6.2287292	-0.0048797	0.0011768	-0.00075972	NaN	3.5732	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6426.6	+		10776	8774	6288	6416							0.0015941052550942914
ITLELYTSYLY	11	Unmodified	_ITLELYTSYLY_					0	0	0		ENSG00000132446|ENST00000359202|FTHL17	ENSG00000132446|ENST00000359202|FTHL17	ENSG00000132446|ENST00000359202|FTHL17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.8606688051502	2	689.860669	1377.70678	2.2012	0.0015185	2.7535	0.0018996	4.9548	0.0034181	689.8610269392781	25.732	0.19304	25.732	25.612	25.805	0	1083	70	0.9699114	0.042096734	0.9699114	392.37122	0	17.029968						180	9	2	NaN	NaN	NaN	0.37016	1	19874	19874		23.118	2.6043	1	21817			10777	2760	6289	6417	8518	8518					0.033039556148878546
ITLSGNGV	8	Unmodified	_ITLSGNGV_					0	0	0		nc|ENSG00000008277|Q9P0K1-4|ADAM22;nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1-5|ADAM22;nc|ENSG00000008277|Q9P0K1-2|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22;ENSG00000008277|ENST00000413139|ADAM22	nc|ENSG00000008277|Q9P0K1-4|ADAM22	nc|ENSG00000008277|Q9P0K1-4|ADAM22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.4199448083002	1	760.419945	759.412668	1.5347	0.001167	4.7389	0.0036035	6.2736	0.0047705	760.4234684544936	29.473	0.19304	29.466	29.417	29.61	-0.0070667	555	91	1.2891023	0.053919435	1.2875829	262.85333	0	10.9944						462	9	4	NaN	NaN	NaN	0.74229	1	4135	4135		16.417	2.3751	1	136010			10778	371	6290	6418	8519	8519					0.02333851426305955
ITMGLPLSPAA	11	Unmodified	_ITMGLPLSPAA_					0	0	0		ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7	ENSG00000091157|ENST00000254442|WDR7	ENSG00000091157|ENST00000254442|WDR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.53533217356664	3	357.535332	1069.58417	2.1731	0.00077698	4.6121	0.001649	6.7853	0.002426	357.5369311369921	18.101	0.095966	18.101	18.077	18.173	0	1482	34	0.72465914	0.020429373	0.72465914	440.98505	0	12.432098						77	5	3	NaN	NaN	NaN	0.7072	1	11561	11561		3.0365	0	1	5781.3			10779	1076	6291	6419	8520	8520					0.05215840402433969
ITMIDLLCQ	9	Unmodified	_ITMIDLLCQ_					0	0	0			REV__tr|U7SXH9|U7SXH9_FUSNUAspartatecarbamoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrBPE=3SV=1	REV__tr|U7SXH9|U7SXH9_FUSNUAspartatecarbamoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.536965176	1	1049.53697	1048.52969	1.3069	0.0013717	3.4445	0.0036151	4.7514	0.0049867	1049.5403268619052	28.121	0.14477	28.112	28.04	28.185	-0.0089779	156	97	1.5263584	0.05668187	1.5248389	309.70398	0	11.500977						273	7	3	NaN	NaN	NaN	0.53317	1	10350	10350		8.2448	1.8149	1	39244	+		10780	13548	6292	6420	8521	8521					0.007365052593740984
ITNYIVNLL	9	Unmodified	_ITNYIVNLL_					0	0	0			REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.8133246820502	2	531.813325	1061.6121	0.57066	0.00030349	6.7852	0.0036085	7.3559	0.0039119	531.8178505004472	29.979	0.096502	29.973	29.925	30.021	-0.0064087	1218	91	0.8873258	0.055214822	0.8858064	360.0216	0	22.40274						234	5	3	NaN	NaN	NaN	0.66529	1	10944	10944		2.1763	0	1	34486	+		10781	9578	6293	6421	8522	8522					0.08375486654199449
ITNYIVNLL	9	Unmodified						0	0	0			REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.813325	1061.6121	2.2066	0.0011735	6.4646	0.003438	8.6711	0.0046114	531.8166748856253	30.125	0.21725	30.125	30.053	30.27	0	1224	151	0.883646	0.09187585	0.883646	358.52856		37.277466	0.076089	-5.8963E-05	-0.0010802	NaN	2.1763	605	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102790	+		10782	9578	6293	6421							0.08375486654199449
ITNYIVNLL	9	Unmodified						0	0	0			REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.813325	1061.6121	0.57066	0.00030349	6.7852	0.0036085	7.3559	0.0039119	531.8178505004472	29.979	0.096502	29.973	29.925	30.021	-0.0064087	1218	91	0.8873258	0.055214822	0.8858064	360.0216		22.40274	-0.076089	0.00028206	0.0010802	NaN	2.1763	234	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34486	+		10783	9578	6293	6421							0.08375486654199449
ITPSCGLL	8	Unmodified	_ITPSCGLL_					0	0	0		ENST00000416445.6_3_17:46919169-46925489:+|nuORF	ENST00000416445.6_3_17:46919169-46925489:+|nuORF	ENST00000416445.6_3_17:46919169-46925489:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.4331520315001	1	803.433152	802.425876	1.2106	0.00097261	1.623	0.001304	2.8336	0.0022766	803.4347665243929	33.431	0.16891	33.431	33.383	33.552	0	450	58	1.3518641	0.03400898	1.3518641	275.38843	0	6.9279785						248	8	3	NaN	NaN	NaN	0.82797	1	4778	4778		5.4659	0	1	29812			10784	6885	6294	6422	8523	8523					0.016759662140202636
ITRLFSPYQR	10	Unmodified	_ITRLFSPYQR_					0	0	0			REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1	REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8591291692	2	640.859129	1279.70371	1.2731	0.00081586	-1.1461	-0.00073449	0.12697	8.137E-05	641.3604319254202	40.056	0.2164	40.056	39.983	40.2	0	1227	103	0.88180584	0.0625633	0.88180584	357	0	25.328796						434	10	2	NaN	NaN	NaN	0.76548	1	18424	18424		3.5698	0.97034	1	123400	+		10785	10684	6295	6423	8524	8524					0.07504170071342742
ITSIVVLVER	10	Unmodified	_ITSIVVLVER_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.8529811588	2	564.852981	1127.69141	2.0192	0.0011405	-2.0462	-0.0011558	-0.027008	-1.5256E-05	564.8515066080878	25.274	0.12063	25.274	25.226	25.346	0	1254	52	0.8652351	0.031306982	0.8652351	350.79504	0	12.692902						123	6	3	NaN	NaN	NaN	0.41022	1	14009	14009		23.177	3.8402	1	15721			10786	1357	6296	6424	8525	8525					0.13267133608314907
ITSSVSSG	8	Unmodified	_ITSSVSSG_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF;ENSG00000136451|ENST00000581208|VEZF1	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3675748868002	1	737.367575	736.360298	0.98242	0.00072441	5.28	0.0038933	6.2624	0.0046177	737.372097158235	30.753	0.19307	30.753	30.68	30.873	0	582	55	1.2729256	0.03236556	1.2729256	259.69894	0	6.603119						225	9	3	NaN	NaN	NaN	0.82332	1	3850	3850		6.0903	0	1	29296			10787	3019	6297	6425	8526	8526					-0.018427317073133054
ITTFGAKS	8	Unmodified	_ITTFGAKS_					0	0	0			REV__nc|ENSG00000108231|O95970-3|LGI1	REV__nc|ENSG00000108231|O95970-3|LGI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4512449367002	1	824.451245	823.443968	2.2628	0.0018655	2.0757	0.0017113	4.3385	0.0035769	824.4529635372793	28.99	0.024136	28.982	28.958	28.982	-0.0077229	462	31	1.3447032	0.017904282	1.3431838	273.812	0	3.645691						35	2	2	NaN	NaN	NaN	0.84756	1	4951	4951		1.072	0.67635	1	2325.9	+		10788	9029	6298	6426	8527	8527					0.025184244603906336
ITVKGGCS	8	Unmodified	_ITVKGGCS_					0	0	0		LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|20|1|anti-sense;LTR7Y_dup194|chr13:109270684-109271116:+|4.307898892918061|0.2058520431326168|4.39|499.0|28|3|anti-sense	LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|20|1|anti-sense	LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|20|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.70218867140005	2	382.702189	763.389824	1.1334	0.00043375	5.753	0.0022017	6.8863	0.0026354	382.70435620439724	27.783	0.21722	27.774	27.726	27.943	-0.009552	1392	64	0.780288	0.038895845	0.77876854	318.1711	0	15.8602295						253	10	3	NaN	NaN	NaN	0.83582	1	4189	4189		4.4131	0	1	36437			10789	7867	6299	6427	8528	8528					-0.0013349096282126993
ITVSTVKTL	9	Unmodified	_ITVSTVKTL_					0	0	0		ENST00000338354.7_1_10:124354914-124357525:+|nuORF	ENST00000338354.7_1_10:124354914-124357525:+|nuORF	ENST00000338354.7_1_10:124354914-124357525:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.3000501313	2	481.30005	960.585547	1.8476	0.00088927	-2.0517	-0.00098746	-0.20401	-9.8191E-05	481.29892062842265	19.708	0.072041	19.708	19.684	19.756	0	1335	70	0.8154261	0.04247117	0.8154261	331.29446	0	17.255371						129	4	2	NaN	NaN	NaN	0.58159	1	7351	7351		6.2502	1.3405	1	16768			10790	6534	6300	6428	8529	8529					0.1036779776285357
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.32078557340003	2	479.320786	956.627018	1.6876	0.00080889	-2.0104	-0.00096362	-0.32281	-0.00015473	479.31972190548004	23.706	0.09642	23.706	23.682	23.778	0	1293	40	0.84127116	0.023982108	0.84127116	341.81485	0	9.74411						106	5	3	NaN	NaN	NaN	0.04743	1	7263	7263		48.002	5.6846	1	15805			10791	5441	6301	6429	8530	8530					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.32078557340003	2	479.320786	956.627018	1.8151	0.00087002	-1.8723	-0.00089743	-0.057188	-2.7412E-05	479.3198753855407	23.73	0.072227	23.717	23.693	23.765	-0.013048	1293	37	0.84127116	0.022136092	0.8397517	341.81485	0	8.99408						82	4	2	NaN	NaN	NaN	0.27507	1	7125	7125		20.513	2.5436	1	15880			10792	5441	6301	6429	8531	8531					0.14696978522181325
IVAPLGPY	8	Unmodified	_IVAPLGPY_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|29|3|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|29|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.2445466251	2	415.244547	828.47454	1.2736	0.00052885	-2.6377	-0.0010953	-1.3641	-0.00056644	415.24374258795393	35.529	0.14479	35.529	35.505	35.65	0.00053024	1251	310	0.8670771	0.1904459	0.8655577	353.0709	0	77.54892						1620	7	6	NaN	NaN	NaN	0.83849	1	5009	5009		4.0537	0.48046	1	1089900	+		10793	13059	6302	6430	8532	8532					0.05344202845424206
IVASSVIL	8	Unmodified	_IVASSVIL_					0	0	0		ENST00000562017.1_1_16:56643060-56643138:+|nuORF	ENST00000562017.1_1_16:56643060-56643138:+|nuORF	ENST00000562017.1_1_16:56643060-56643138:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.5080315341003	1	801.508032	800.500755	2.0962	0.0016801	-0.8374	-0.00067118	1.2588	0.001009	801.5067991489578	29.787	0.072403	29.787	29.763	29.836	0	450	37	1.3518641	0.021478295	1.3518641	275.3996	0	4.3754883						54	4	2	NaN	NaN	NaN	0.80071	1	4757	4757		9.1232	0	1	3569.4			10794	7601	6303	6431	8533	8533					0.09252472016919455
IVDEDSPVL	9	Unmodified	_IVDEDSPVL_					0	0	0		ENST00000558021.1_1_15:68040900-68062002:+|nuORF;nc|ENSG00000137764|Q13163-4|MAP2K5;nc|ENSG00000137764|Q13163-2|MAP2K5;nc|ENSG00000137764|Q13163-3|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5	ENST00000558021.1_1_15:68040900-68062002:+|nuORF	ENST00000558021.1_1_15:68040900-68062002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5040683682001	1	986.504068	985.496792	2.1018	0.0020734	-1.3841	-0.0013654	0.71769	0.00070801	986.5028636560861	23.223	0.072397	23.21	23.186	23.258	-0.013294	267	55	1.4606913	0.032012343	1.4591719	296.62595	0	6.500824						115	4	3	NaN	NaN	NaN	0.12328	1	7889	7889		32.453	7.4917	1	9812.4			10795	3103	6304	6432	8534	8534					0.003463377325374495
IVDFIPVSI	9	Unmodified	_IVDFIPVSI_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5870101366	1	1002.58701	1001.57973	1.0992	0.0011021	-8.7034	-0.0087259	-7.6041	-0.0076238	1002.57888781131	33.842	0.19303	33.842	33.721	33.914	0	195	103	1.5033154	0.06033945	1.5033154	305.21417	0	12.250549						316	9	3	NaN	NaN	NaN	0.16171	1	8667	8667		27.789	4.4544	1	45813			10796	13858	6305	6433	8535	8535					0.07900699251183596
IVDLTVQEKEK	11	Unmodified	_IVDLTVQEKEK_					0	0	0		ENSG00000124802|ENST00000379715|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.5818870415333	3	434.581887	1300.72383	1.4136	0.00061433	-8.5196	-0.0037025	-7.106	-0.0030882	434.5779307908328	16.35	0.11993	16.35	16.302	16.422	0	1419	34	0.76361835	0.020382881	0.76361835	463.64374	0	12.375793						65	6	2	NaN	NaN	NaN	0.76908	1	18798	18798		2.1547	1.664	1	5713.1			10797	2442	6306	6434	8536	8536					0.08549876220649821
IVDSLEPVF	9	Unmodified	_IVDSLEPVF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5455392524002	1	1018.54554	1017.53826	2.7422	0.0027931	-2.2529	-0.0022946	0.48936	0.00049843	1018.5443530154829	29.618	0.24129	29.618	29.522	29.763	0	183	127	1.510409	0.074521184	1.510409	306.589	0	15.126617						739	11	4	NaN	NaN	NaN	0.062072	1	9277	9277		41.785	3.1766	1	301540			10798	2988	6307	6435	8537	8537					0.03019518491873896
IVDSLEPVF	9	Unmodified	_IVDSLEPVF_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5455392524002	1	1018.54554	1017.53826	1.9698	0.0020063	-1.4967	-0.0015244	0.47313	0.00048191	1018.5446852656513	29.618	0.26542	29.61	29.538	29.803	-0.0070648	180	166	1.5121819	0.09764433	1.5106624	306.94888	0	19.820251						796	12	4	NaN	NaN	NaN	0.16171	1	9099	9099		27.789	2.8278	1	311030			10799	2988	6307	6435	8538	8538					0.03019518491873896
IVEGEFLL	8	Unmodified	_IVEGEFLL_					0	0	0		nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-2|ZNF12	nc|ENSG00000164631|P17014-4|ZNF12	nc|ENSG00000164631|P17014-4|ZNF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.5135108425001	1	919.513511	918.506234	1.2642	0.0011625	-0.32404	-0.00029796	0.9402	0.00086452	919.5130732113143	37.648	0.21646	37.651	37.603	37.819	0.0028229	315	91	1.4322147	0.053456068	1.4306953	291.13556	0	10.866364						405	10	4	NaN	NaN	NaN	0.19946	1	6257	6257		50.033	2.9924	1	78560			10800	4337	6308	6436	8539	8539					0.04372150808717379
IVENGETEM	9	Unmodified	_IVENGETEM_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.4506525892001	1	1021.45065	1020.44338	2.6091	0.002665	-0.48603	-0.00049646	2.123	0.0021686	1021.4507560368324	16.806	0.11992	16.806	16.782	16.901	0	276	49	1.4553556	0.028461456	1.4553556	295.4028	0	5.777008						103	6	2	NaN	NaN	NaN	0.017558	1	9374	9374		75.089	25.128	1	10209			10801	1432	6309	6437	8540	8540					-0.06602783041637394
IVENGETEM	9	Oxidation (M)	_IVENGETEM(Oxidation (M))_		IVENGETEM(1)		IVENGETEM(67)	0	0	1		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4455672113	1	1037.44557	1036.43829	2.1078	0.0021867	-2.61	-0.0027078	-0.50224	-0.00052105	1037.4432540284793	13.541	0.096091	13.541	13.517	13.613	0	300	49	1.4411188	0.028482556	1.4411188	292.45288	0	5.7800903						90	5	2	NaN	NaN	NaN	0.024221	1	10050	10050		66.656	39.925	1	5613			10802	1432	6309	6438	8541	8541		162			-0.07847086904257594
IVENGETEM	9	Oxidation (M)	_IVENGETEM(Oxidation (M))_		IVENGETEM(1)		IVENGETEM(49)	0	0	1		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.4455672113	1	1037.44557	1036.43829	1.7181	0.0017825	0.63932	0.00066326	2.3574	0.0024457	1037.445829048451	13.541	0.095992	13.531	13.483	13.579	-0.010098	297	43	1.4428991	0.024922252	1.4413797	292.81415	0	5.057617						71	5	2	NaN	NaN	NaN	0.045904	1	9840	9840		48.65	18.04	1	4315			10803	1432	6309	6438	8542	8542		162			-0.07847086904257594
IVFWLGDDL	9	Unmodified	_IVFWLGDDL_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5615236675999	1	1077.56152	1076.55425	1.1696	0.0012603	-1.6731	-0.0018029	-0.50357	-0.00054263	1077.5601656570539	35.916	0.072254	35.916	35.892	35.964	0	102	67	1.5582114	0.038906813	1.5582114	316.0602	0	7.8916626						89	4	2	NaN	NaN	NaN	0.17818	1	11830	11830		26.732	4.8966	1	7525.4			10804	1647	6310	6439	8543	8543					0.01903224728744135
IVFWLGDDL	9	Unmodified						0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1077.56152	1076.55425	1.6244	0.0017504	3.1039	0.0033446	4.7283	0.005095	1077.5659252727407	35.914	0.096405	35.916	35.891	35.988	0.0011024	108	52	1.5546752	0.030056357	1.5531558	315.34293		6.0964966	-0.00027087	0.0034085	-0.0025278	NaN	26.732	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7823.3			10805	1647	6310	6439							0.01903224728744135
IVFYVYSK	8	Unmodified	_IVFYVYSK_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5607953861	1	1018.5608	1017.55352	1.7763	0.0018093	3.1348	0.003193	4.9111	0.0050023	1018.564003852137	37.747	0.33672	37.747	37.626	37.963	0	150	64	1.5299006	0.03719151	1.5299006	310.5454	0	7.5492554						438	15	3	NaN	NaN	NaN	0.67593	1	9283	9283		20.555	0	1	56386	+		10806	13222	6311	6440	8544	8544					0.04544430079704398
IVGPLVEM	8	Unmodified	_IVGPLVEM_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4801022241	1	857.480102	856.472826	2.0002	0.0017152	1.8962	0.0016259	3.8964	0.0033411	857.4814087703297	27.905	0.048273	27.905	27.881	27.929	0	390	52	1.3876231	0.030361176	1.3876231	282.3726	0	6.178314						57	3	2	NaN	NaN	NaN	0.79379	1	5493	5493		10.052	0.92837	1	4035.5			10807	2827	6312	6441	8545	8545					0.03884825765157984
IVGPLVEM	8	Unmodified						0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.480102	856.472826	1.4792	0.0012684	0.53832	0.0004616	2.0175	0.00173	857.4807407486259	27.904	0.072384	27.895	27.87	27.943	-0.009552	390	43	1.3876231	0.025001884	1.3861036	282.3726		5.087738	-0.0051472	-0.00043746	-0.00075972	NaN	10.052	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4091.5			10808	2827	6312	6441							0.03884825765157984
IVGWNKNRV	9	Unmodified	_IVGWNKNRV_					0	0	0		ENST00000422154.6_1_X:102931954-102933554:-|nuORF	ENST00000422154.6_1_X:102931954-102933554:-|nuORF	ENST00000422154.6_1_X:102931954-102933554:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3143575248	2	543.314358	1084.61416	1.4723	0.0007999	5.8332	0.0031693	7.3055	0.0039692	543.3170258238829	20.405	0.072325	20.391	20.367	20.439	-0.014141	1257	43	0.86339295	0.025794804	0.8618735	350.21597	0	10.463074						62	4	2	NaN	NaN	NaN	0.66529	1	11870	11870		2.1763	0.073765	1	9792.4			10809	6921	6313	6442	8546	8546					0.07523960182652445
IVGWNKNRV	9	Unmodified						0	0	0		ENST00000422154.6_1_X:102931954-102933554:-|nuORF	ENST00000422154.6_1_X:102931954-102933554:-|nuORF	ENST00000422154.6_1_X:102931954-102933554:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.314358	1084.61416	1.3376	0.00072672	8.8755	0.0048222	10.213	0.0055489	543.3192331953442	20.381	0.048077	20.381	20.381	20.429	0	1257	34	0.86339295	0.02026403	0.86339295	350.21597		8.219666	-0.0049645	0.0015241	0.00075972	NaN	2.1763	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8982.8			10810	6921	6313	6442							0.07523960182652445
IVHGASNA	8	Unmodified	_IVHGASNA_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.3998780682	1	768.399878	767.392602	1.7434	0.0013396	-6.2718	-0.0048192	-4.5284	-0.0034796	768.394977901858	29.352	0.072405	29.344	29.32	29.393	-0.0077209	552	40	1.2908988	0.023353815	1.2893794	263.1711	0	4.761078						59	4	2	NaN	NaN	NaN	0.80692	1	4249	4249		8.2903	0	1	4781.8			10811	985	6314	6443	8547	8547					-0.0003989951367202593
IVHQELESL	9	Unmodified	_IVHQELESL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2902137265	2	534.290214	1066.56587	1.1452	0.00061187	0.14019	7.4901E-05	1.2854	0.00068677	534.2901652077741	19.01	0.072039	18.996	18.972	19.044	-0.014059	1254	64	0.8652351	0.038698435	0.86371565	351.03772	0	15.7005005						143	4	2	NaN	NaN	NaN	0.19268	1	11147	11147		25.801	3.966	1	24094			10812	2167	6315	6444	8548	8548					0.03525421752101465
IVHQELESL	9	Unmodified						0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.290214	1066.56587	2.2099	0.0011807	-1.8328	-0.00097924	0.37712	0.00020149	534.2876913498716	18.964	0.11998	18.964	18.94	19.06	0	1254	67	0.8652351	0.040534675	0.8652351	351.03775		16.445465	-0.01575	-0.0016187	0.00075972	NaN	25.801	273	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39627			10813	2167	6315	6444							0.03525421752101465
IVIAGPTG	8	Unmodified	_IVIAGPTG_					0	0	0		tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	tr|U7SNR4|U7SNR4_FUSNUtRNAdimethylallyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=miaAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.434866591	1	727.434867	726.42759	1.7402	0.0012659	-10.252	-0.0074577	-8.5119	-0.0061918	727.4253908551165	55.989	0.16795	55.989	55.917	56.085	0	615	157	1.2531329	0.093750596	1.2531329	255.72485	0	19.13153						391	8	4	NaN	NaN	NaN	0.84887	1	3716	3716		0.32989	0	1	134310			10814	13793	6316	6445	8549	8549					0.05343343294271108
IVNIETPVR	9	Unmodified	_IVNIETPVR_					0	0	0		ENST00000489731.1_1_1:120548017-120572574:-|nuORF;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.8085736551501	2	520.808574	1039.60259	1.5701	0.00081772	-1.9033	-0.00099123	-0.33316	-0.00017351	520.8072543889251	19.228	0.07206	19.228	19.204	19.276	0	1302	37	0.8357362	0.022143304	0.8357362	339.18173	0	8.986816						86	4	3	NaN	NaN	NaN	0.14787	1	10211	10211		28.896	8.4469	1	11069			10815	7195	6317	6446	8550	8550					0.08437718368668357
IVNIETPVR	9	Unmodified						0	0	0		ENST00000489731.1_1_1:120548017-120572574:-|nuORF;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	ENST00000489731.1_1_1:120548017-120572574:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.808574	1039.60259	1.594	0.00083017	-0.75046	-0.00039085	0.84353	0.00043932	520.8088978182507	19.25	0.096109	19.236	19.188	19.284	-0.014141	1302	37	0.8357362	0.022143304	0.8342168	339.18173		8.986816	0.0039228	0.00056171	-0.00075972	NaN	28.896	99	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10697			10816	7195	6317	6446							0.08437718368668357
IVNPTIVLL	9	Unmodified	_IVNPTIVLL_					0	0	0		nc|ENSG00000095637|Q9BX66-7|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.6342946802	1	981.634295	980.627018	1.5124	0.0014847	-2.2203	-0.0021795	-0.70787	-0.00069487	981.6334948481446	32.924	0.072395	32.921	32.897	32.969	-0.0024757	195	70	1.5033154	0.040789723	1.501796	305.30267	0	8.283813						111	4	2	NaN	NaN	NaN	0.14787	1	7741	7741		28.896	8.4469	1	9781.1			10817	1131	6318	6447	8551	8551					0.1359297852217196
IVNPTIVLL	9	Unmodified						0	0	0		nc|ENSG00000095637|Q9BX66-7|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	981.634295	980.627018	1.3685	0.0013434	-2.0838	-0.0020455	-0.71523	-0.00070209	981.6317793134626	32.925	0.048313	32.925	32.9	32.949	0	198	85	1.5015416	0.049685955	1.5015416	304.9424		10.090546	0.0017764	7.5167E-05	-0.0001272	NaN	28.896	97	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8454			10818	1131	6318	6447							0.1359297852217196
IVPAQVAPL	9	Unmodified	_IVPAQVAPL_					0	0	0			REV__ENSG00000153060|ENST00000283025|TEKT5	REV__ENSG00000153060|ENST00000283025|TEKT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	907.5611297371	1	907.56113	906.553853	1.7465	0.0015851	-0.48405	-0.00043931	1.2625	0.0011458	907.5604723596839	29.16	0.072411	29.16	29.136	29.208	0	309	43	1.435777	0.024935484	1.435777	291.91647	0	5.0697937						64	4	2	NaN	NaN	NaN	0.24994	1	6188	6188		22.126	1.5709	1	4534.2	+		10819	10065	6319	6448	8552	8552					0.0968384979955772
IVPAQVAPL	9	Unmodified						0	0	0			REV__ENSG00000153060|ENST00000283025|TEKT5	REV__ENSG00000153060|ENST00000283025|TEKT5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	907.56113	906.553853	1.7465	0.0015851	-0.48405	-0.00043931	1.2625	0.0011458	907.5604723596839	29.16	0.072411	29.16	29.136	29.208	0	309	43	1.435777	0.024935484	1.435777	291.91647		5.0697937	-0.0078152	-0.00066204	0.00075972	NaN	22.126	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4534.2	+		10820	10065	6319	6448							0.0968384979955772
IVPKMTHHT	9	Unmodified	_IVPKMTHHT_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2894938325	2	532.289494	1062.56443	1.8423	0.00098066	6.3201	0.0033641	8.1624	0.0043448	532.2931414530453	34.517	0.12068	34.517	34.469	34.589	0	1257	67	0.86339295	0.04054779	0.86339295	350.30713	0	16.4516						156	6	2	NaN	NaN	NaN	0.25448	1	11245	11245		21.835	1.3863	1	25242	+		10821	10887	6320	6449	8553	8553					0.03565509182340065
IVPTIDNGG	9	Unmodified	_IVPTIDNGG_					0	0	0			REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	REV__ENST00000565642.5_1_16:71777395-71799448:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4676232824002	1	885.467623	884.460347	1.2505	0.0011072	5.1142	0.0045285	6.3647	0.0056357	885.4715164951272	30.873	0.096476	30.873	30.849	30.946	0	384	67	1.3911947	0.03926778	1.3911947	282.95782	0	7.9867554						103	5	2	NaN	NaN	NaN	0.56377	1	5864	5864		6.9844	1.2902	1	7749.3	+		10822	10445	6321	6450	8554	8554					0.013495056264900995
IVQGPDPNL	9	Unmodified	_IVQGPDPNL_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.75854945734994	2	476.758549	951.502546	1.2076	0.00057574	-0.9011	-0.00042961	0.3065	0.00014613	476.75835974647765	20.622	0.096323	20.622	20.597	20.694	0	1371	70	0.79324204	0.042526424	0.79324204	322.32483	0	17.28012						166	5	3	NaN	NaN	NaN	0.052553	1	7127	7127		45.827	9.2401	1	24659			10823	1716	6322	6451	8555	8555					0.024854810348415413
IVQGPDPNL	9	Unmodified	_IVQGPDPNL_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.5098224481	1	952.509822	951.502546	1.5515	0.0014778	0.12017	0.00011447	1.6717	0.0015923	952.5095187380695	20.622	0.16867	20.622	20.597	20.766	0	309	100	1.435777	0.058779716	1.435777	291.71017	0	11.942444						376	8	4	NaN	NaN	NaN	0.002766	1	7128	7128		108.71	33.013	1	90071			10824	1716	6322	6451	8556	8556					0.024854810348415413
IVQGPDPNL	9	Unmodified	_IVQGPDPNL_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.5098224481	1	952.509822	951.502546	1.3884	0.0013225	-0.083954	-7.9967E-05	1.3045	0.0012425	952.509299264311	20.622	0.19287	20.608	20.584	20.776	-0.014088	312	121	1.433996	0.0712595	1.4324765	291.34833	0	14.477966						390	9	4	NaN	NaN	NaN	0.0068607	1	6993	6993		98.792	46.012	1	93007			10825	1716	6322	6451	8557	8557					0.024854810348415413
IVSGDTSKLM	10	Unmodified	_IVSGDTSKLM_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5499727032998	1	1050.54997	1049.5427	1.7042	0.0017903	3.2332	0.0033966	4.9373	0.0051869	1050.5543429880486	31.066	0.14479	31.066	31.018	31.163	0	177	160	1.5139546	0.09386444	1.5139546	307.18335	0	19.045197						529	7	3	NaN	NaN	NaN	0.60686	1	10619	10619		14.425	3.8201	1	122950			10826	5306	6323	6452	8558	8558					0.019906596430928403
IVTDVIATL	9	Unmodified	_IVTDVIATL_					0	0	0		ENSG00000167286|ENST00000300692|CD3D	ENSG00000167286|ENST00000300692|CD3D	ENSG00000167286|ENST00000300692|CD3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5662746945001	1	944.566275	943.558998	1.5093	0.0014256	-1.0921	-0.0010315	0.41722	0.00039409	944.5666606711845	29.618	0.048244	29.618	29.594	29.642	0	279	49	1.4535767	0.028458476	1.4535767	295.36206	0	5.782654						66	3	2	NaN	NaN	NaN	0.14301	1	6917	6917		29.598	4.6373	1	5994.5			10827	4539	6324	6453	8559	8559					0.08496108871520391
IVTENKTDEE	10	Unmodified	_IVTENKTDEE_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2827826249	2	589.282783	1176.55101	1.2089	0.00071238	-7.3415	-0.0043262	-6.1326	-0.0036139	589.2785623748954	14.956	0.16829	14.944	14.872	15.04	-0.011738	1233	37	0.87812483	0.02208829	0.8766054	355.84238	0	8.950836						81	8	2	NaN	NaN	NaN	0.5917	1	15121	15121		15.463	2.4598	1	6004.2			10828	6175	6325	6454	8560	8560					-0.030201149065533173
IVVASTAK	8	Unmodified	_IVVASTAK_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4876304430001	1	788.48763	787.480354	0.22877	0.00018038	-8.9481	-0.0070554	-8.7193	-0.0068751	788.4807035685828	56.011	0.16808	56.01	55.986	56.154	-0.00059128	507	214	1.3178225	0.1276437	1.316303	268.53958	0	26.010635						521	8	5	NaN	NaN	NaN	0.84455	1	4505	4505		2.7852	1.3456	1	279780	+		10829	10837	6326	6455	8561	8561					0.0781130135709418
IVVASTAK	8	Unmodified						0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	788.48763	787.480354	0.22877	0.00018038	-8.9481	-0.0070554	-8.7193	-0.0068751	788.4807035685828	56.011	0.16808	56.01	55.986	56.154	-0.00059128	507	214	1.3178225	0.1276437	1.316303	268.53958		26.010635	-0.0013578	0.0012381	0.00013707	NaN	2.7852	521	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279780	+		10830	10837	6326	6455							0.0781130135709418
IVVDAIDVL	9	Unmodified	_IVVDAIDVL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5662746944998	1	956.566275	955.558998	1.1045	0.0010565	0.52789	0.00050496	1.6323	0.0015614	956.5666288029093	31.525	0.19312	31.525	31.477	31.67	0	249	145	1.4713576	0.08538437	1.4713576	298.92105	0	17.34671						533	9	5	NaN	NaN	NaN	0.011118	1	7242	7242		89.521	27.544	1	209510			10831	6112	6327	6456	8562	8562					0.07944108871492972
IVVGYKEE	8	Unmodified	_IVVGYKEE_					0	0	0			REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5036744377	1	936.503674	935.496398	1.6704	0.0015643	-6.374	-0.0059693	-4.7036	-0.004405	936.4985162547249	56.804	0.096146	56.804	56.756	56.852	0	153	61	1.5281296	0.03543353	1.5281296	310.54947	0	7.200897						101	5	2	NaN	NaN	NaN	0.84512	1	6737	6737		2.4615	0.79115	1	6573.9	+		10832	8325	6328	6457	8563	8563					0.02606962803326951
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.58864768556657	3	379.588648	1135.74411	2.105	0.00079903	-1.947	-0.00073906	0.15799	5.9972E-05	379.58780349391077	18.364	0.096073	18.364	18.316	18.412	0	1422	37	0.7617651	0.022239447	0.7617651	463.22275	0	13.523621						104	5	3	NaN	NaN	NaN	0.26193	1	14314	14314		26.989	10.763	1	15069			10833	6161	6329	6458	8564	8564					0.18167136461761402
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.58864768556657	3	379.588648	1135.74411	2.1166	0.00080345	-1.182	-0.00044869	0.93459	0.00035476	379.5882412876695	18.434	0.096079	18.42	18.372	18.468	-0.01395	1419	34	0.76361835	0.020385087	0.7620989	464.34964	0	12.395996						99	5	3	NaN	NaN	NaN	0.58571	1	13847	13847		14.959	7.975	1	12213			10834	6161	6329	6458	8565	8565					0.18167136461761402
IVVTSPDLL	9	Unmodified	_IVVTSPDLL_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;CUBN|p.K663Sfs*38|1|0.32|ENSG00000107611|chr10:17085721-17085721|C/-|frameshift_variant;CUBN|p.N1018Hfs*6|1|0.03|ENSG00000107611|chr10:17065595-17065596|-/TAGAATAAAGGGTAGTG|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5662746945001	1	956.566275	955.558998	1.2506	0.0011963	0.155	0.00014827	1.4056	0.0013446	956.5666384571227	31.5	0.21722	31.495	31.447	31.664	-0.0044174	246	151	1.4731345	0.08895147	1.4716152	299.28207	0	18.071411						546	10	5	NaN	NaN	NaN	0.056143	1	7103	7103		44.302	2.5178	1	215760			10835	1636	6330	6459	8566	8566					0.0794410887151571
IVYKKRKRR	9	Unmodified	_IVYKKRKRR_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1246.8218697252	1	1246.82187	1245.81459	1.6584	0.0020677	3.5852	0.0044702	5.2437	0.0065379	1246.8262482622822	39.068	0.024071	39.068	39.044	39.068	0	72	61	1.5758814	0.035313725	1.5758814	319.09406	0	7.1505127						97	2	3	NaN	NaN	NaN	0.67989	1	17667	17667		0.92586	0.12598	1	19790	+		10836	13531	6331	6460	8567	8567					0.2015185457012194
IVYKKRKRR	9	Unmodified	_IVYKKRKRR_					0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8218697252	1	1246.82187	1245.81459	1.4793	0.0018444	3.693	0.0046045	5.1723	0.0064489	1246.8274746877914	39.692	0.12062	39.697	39.697	39.818	0.0053368	63	64	1.5811787	0.037077427	1.5796592	320.1667	0	7.50766						276	6	4	NaN	NaN	NaN	0.67989	1	16928	16928		0.92586	0.12598	1	48601	+		10837	13531	6331	6460	8568	8568					0.2015185457012194
IVYKKRKRR	9	Unmodified						0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1246.82187	1245.81459	1.6584	0.0020677	3.5852	0.0044702	5.2437	0.0065379	1246.8262482622822	39.068	0.024071	39.068	39.044	39.068	0	72	61	1.5758814	0.035313725	1.5758814	319.09406		7.1505127	0.010733	0.00087545	-0.0010062	NaN	0.92586	97	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19790	+		10838	13531	6331	6460							0.2015185457012194
IVYKKRKRR	9	Unmodified						0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1246.82187	1245.81459	1.8012	0.0022458	4.0867	0.0050954	5.888	0.0073412	1247.8297367206571	39.839	0.16862	39.839	39.839	40.008	0	63	58	1.5811787	0.03354621	1.5811787	320.1667		6.792633	0.070737	0.00029115	0.00075972	NaN	0.92586	247	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32945	+		10839	13531	6331	6460							0.2015185457012194
IVYKKRKRR	9	Unmodified						0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1246.82187	1245.81459	1.7042	0.0021248	2.3949	0.0029861	4.0991	0.0051109	1246.824982259547	39.042	0.02412	39.047	39.023	39.047	0.0046806	66	52	1.579413	0.03001821	1.5778936	319.80917		6.0782776	-0.010733	-0.00060867	0.0010062	NaN	0.92586	51	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9270	+		10840	13531	6331	6460							0.2015185457012194
IVYKKRKRR	9	Unmodified						0	0	0			REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	REV__tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1246.82187	1245.81459	1.4793	0.0018444	3.693	0.0046045	5.1723	0.0064489	1246.8274746877914	39.692	0.12062	39.697	39.697	39.818	0.0053368	63	64	1.5811787	0.037077427	1.5796592	320.1667		7.50766	-0.070737	-0.0001998	-0.00075972	NaN	0.92586	276	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48601	+		10841	13531	6331	6460							0.2015185457012194
IVYVLFGV	8	Unmodified	_IVYVLFGV_					0	0	0		ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A	ENST00000569075.5_1_15:42525398-42565582:-|nuORF	ENST00000569075.5_1_15:42525398-42565582:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.5444170404003	1	909.544417	908.537141	1.0791	0.0009815	2.6146	0.0023781	3.6937	0.0033596	909.546909986648	37.939	0.12018	37.939	37.891	38.011	0	1257	34	0.86339295	0.020266235	0.86339295	175.53589	0	4.1203003						90	6	2	NaN	NaN	NaN	0.84876	1	6211	6211		0.39566	0	1	7318.5			10842	1456	6332	6461	8569	8569					0.07921348913635029
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.2871397213	2	592.28714	1182.55973	1.2303	0.00072866	-1.6641	-0.0009856	-0.43381	-0.00025694	592.2861092706597	33.069	0.43442	33.069	32.973	33.407	0	1200	100	0.89836043	0.060654342	0.89836043	364.02097	0	24.577484						1116	19	4	NaN	NaN	NaN	0.023074	1	15916	15916		68.108	36.547	1	335870			10843	5210	6333	6462	8570	8570					-0.024250964794418906
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1183.567002976	1	1183.567	1182.55973	2.197	0.0026003	0.3512	0.00041567	2.5482	0.003016	1183.5682247626619	33.094	0.24132	33.094	33.021	33.262	0	63	124	1.5811787	0.0724659	1.5811787	320.35464	0	14.681946						441	11	4	NaN	NaN	NaN	0.00050979	1	15917	15917		115.51	79.473	1	70438			10844	5210	6333	6462	8571	8571					-0.024250964794418906
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1183.567002976	1	1183.567	1182.55973	2.0391	0.0024134	0.71946	0.00085153	2.7586	0.003265	1183.5679468540623	33.069	0.04826	33.069	33.069	33.118	0	591	91	1.26753	0.05396545	1.26753	256.80786	0	10.933701						118	3	2	NaN	NaN	NaN	0.62619	1	15918	15918		4.4131	0.84331	1	9347.1			10845	5210	6333	6462	8572	8572					-0.024250964794418906
IWDETPLYF	9	Unmodified	_IWDETPLYF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2871397213	2	592.28714	1182.55973	1.0439	0.00061829	-1.7038	-0.0010091	-0.65991	-0.00039085	592.2860404295809	33.068	0.33768	33.066	32.993	33.331	-0.0024796	1197	103	0.9001988	0.062488973	0.8986794	364.7659	0	25.320892						958	15	4	NaN	NaN	NaN	0.02781	1	15315	15315		61.977	23.059	1	329040			10846	5210	6333	6462	8573	8573					-0.024250964794418906
IWDETPLYF	9	Unmodified						0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1183.567	1182.55973	1.663	0.0019683	0.15724	0.0001861	1.8202	0.0021544	1183.5672191385422	33.092	0.072342	33.09	33.042	33.114	-0.0024757	588	109	1.2693287	0.0647794	1.2678093	257.1723		13.124634	0.010191	-0.00037855	0.00013966	NaN	4.4131	129	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8986.1			10847	5210	6333	6462							-0.024250964794418906
IWDINAML	8	Oxidation (M)	_IWDINAM(Oxidation (M))L_		IWDINAM(1)L		IWDINAM(77)L	0	0	1		ENST00000519391.1_1_8:118542904-118552214:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.4917295429	1	991.49173	990.484453	1.8386	0.0018229	-0.76609	-0.00075958	1.0725	0.0010634	991.49138455692	29.305	0.16889	29.305	29.256	29.425	0	234	67	1.4802408	0.03907633	1.4802408	300.57504	0	7.934784						306	8	4	NaN	NaN	NaN	0.05596	1	8229	8229		76.739	26.778	1	31369			10848	4344	6334	6463	8574	8574		464			-0.011169772115181331
IWDINAML	8	Oxidation (M)	_IWDINAM(Oxidation (M))L_		IWDINAM(1)L		IWDINAM(47)L	0	0	1		ENST00000519391.1_1_8:118542904-118552214:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.4917295429	1	991.49173	990.484453	1.3578	0.0013462	0.012886	1.2777E-05	1.3707	0.001359	991.4922958308986	29.328	0.19302	29.32	29.248	29.441	-0.0077209	234	73	1.4802408	0.042637706	1.4787214	300.57504	0	8.657928						302	9	3	NaN	NaN	NaN	0.23625	1	8057	8057		47.136	15.575	1	29065			10849	4344	6334	6463	8575	8575		464			-0.011169772115181331
IWDLSITRL	9	Unmodified	_IWDLSITRL_					0	0	0		ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.82422371935	2	558.824224	1115.63389	1.5094	0.00084349	-0.43035	-0.00024049	1.0791	0.000603	558.8238619124966	29.16	0.19304	29.16	29.112	29.305	0	1191	58	0.90387505	0.034922183	0.90387505	366.5088	0	14.160461						260	9	4	NaN	NaN	NaN	0.015447	1	13512	13512		77.761	32.596	1	91766			10850	6510	6335	6464	8576	8576					0.08070291402736984
IWDLSITRL	9	Unmodified	_IWDLSITRL_					0	0	0		ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.82422371935	2	558.824224	1115.63389	1.248	0.00069739	0.83754	0.00046804	2.0855	0.0011654	558.8250347899756	29.159	0.2172	29.151	29.103	29.32	-0.0077209	1191	55	0.90387505	0.033082366	0.9023556	366.50876	0	13.414459						274	10	4	NaN	NaN	NaN	0.017076	1	13124	13124		75.698	22.919	1	92138			10851	6510	6335	6464	8577	8577					0.08070291402736984
IWDVSVNSV	9	Unmodified	_IWDVSVNSV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5203871344002	1	1018.52039	1017.51311	2.2769	0.0023191	-2.0146	-0.0020519	0.26233	0.00026719	1018.5186921351326	26.795	0.24181	26.795	26.722	26.964	0	207	82	1.496219	0.047929406	1.496219	303.70877	0	9.728882						273	11	4	NaN	NaN	NaN	0.022185	1	9271	9271		69.233	31.102	1	40476			10852	774	6336	6465	8578	8578					0.005054636892964481
IWDVSVNSV	9	Unmodified	_IWDVSVNSV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5203871344002	1	1018.52039	1017.51311	1.5578	0.0015867	-0.44478	-0.00045302	1.1131	0.0011337	1018.5189757950185	26.794	0.14478	26.783	26.759	26.904	-0.010645	207	100	1.496219	0.058561683	1.4946996	303.70874	0	11.887085						231	7	3	NaN	NaN	NaN	0.0035249	1	9091	9091		106.42	62.122	1	37837			10853	774	6336	6465	8579	8579					0.005054636892964481
IWEELSVL	8	Unmodified	_IWEELSVL_					0	0	0		chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6;MAGEA3|p.G274Vfs*11|1|0.14|ENSG00000221867|chrX:152701650-152701650|G/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3;ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000197172|ENST00000329342|MAGEA6;chrX:152733859-152736087|126|48.74|0.12|8.66|+|ENST00000357916|MAGEA12,MAGEA12;chrX:152698829-152700558|202|12.64|0.02|9.48|+|ENST00000598245|MAGEA3,MAGEA3	chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6	chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.77112551634997	2	494.771126	987.527698	1.5524	0.0007681	-1.6185	-0.00080081	-0.066103	-3.2706E-05	494.7700789737766	29.136	0.072384	29.136	29.087	29.16	0	1317	31	0.8265074	0.018462718	0.8265074	335.6673	0	7.49823						60	4	3	NaN	NaN	NaN	0.80692	1	8130	8130		8.2903	0.70269	1	4047.5			10854	163	6337	6466	8580	8580					0.033435358374163116
IWESERMVW	9	Unmodified	_IWESERMVW_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.2975158298501	2	618.297516	1234.58048	1.3195	0.00081584	-9.6363	-0.0059581	-8.3168	-0.0051423	618.2917766993412	22.284	0.12063	22.284	22.26	22.38	0	1155	64	0.92591566	0.03856069	0.92591566	375.0042	0	15.617432						216	6	3	NaN	NaN	NaN	0.27608	1	17382	17382		20.449	2.479	1	27282	+		10855	10686	6338	6467	8581	8581					-0.027428293714137908
IWETFRRWHRK	11	Unmodified	_IWETFRRWHRK_					0	0	0		ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.47456347275	4	404.474563	1613.86915	1.8734	0.00075774	4.2044	0.0017006	6.0778	0.0024583	404.4759861396979	18.532	0.16789	18.532	18.484	18.652	0	1500	37	0.71351165	0.02230227	0.71351165	576.4466	0	18.018066						160	8	4	NaN	NaN	NaN	0.77891	1	20762	20762		0.43218	0.051836	1	17559			10856	6887	6339	6468	8582	8582					0.08676821650874444
IWFQAPVTF	9	Unmodified	_IWFQAPVTF_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.79493496365	2	554.794935	1107.57532	0.53489	0.00029675	-0.55597	-0.00030845	-0.021079	-1.1694E-05	555.295512196335	33.938	0.14479	33.938	33.914	34.059	0	1230	76	0.8799654	0.0460397	0.8799654	356.84543	0	18.670105						177	7	3	NaN	NaN	NaN	0.27442	1	13183	13183		20.555	5.0928	1	12136			10857	2432	6340	6469	8583	8583					0.025832348282619932
IWISKLPHF	9	Unmodified	_IWISKLPHF_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.8903266796666	3	380.890327	1139.64915	1.8493	0.00070439	-1.9458	-0.00074115	-0.096499	-3.6756E-05	380.88962750309327	25.298	0.21709	25.286	25.238	25.455	-0.012011	1419	40	0.76361835	0.024091423	0.7620989	464.3306	0	14.6492						167	10	3	NaN	NaN	NaN	0.25548	1	13976	13976		21.771	8.6699	1	14998			10858	5599	6341	6470	8584	8584					0.0849120299058086
IWLNEFQL	8	Unmodified	_IWLNEFQL_					0	0	0			REV__PKHD1|p.S2627F|1|0.16|ENSG00000170927|chr6:51855924-51855924|G/A|missense_variant	REV__PKHD1|p.S2627F|1|0.16|ENSG00000170927|chr6:51855924-51855924|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7845672426001	2	531.784567	1061.55458	-0.85334	-0.00045379	-0.98957	-0.00052624	-1.8429	-0.00098003	532.2850077442006	48.353	0.19168	48.358	48.31	48.502	0.004818	1314	40	0.8283535	0.024000287	0.8268341	336.0946	0	9.7378235						127	9	2	NaN	NaN	NaN	0.82797	1	10933	10933		5.4659	0	1	12303	+		10859	13294	6342	6471	8585	8585					0.026266444486282126
IWLPFPVLL	9	Unmodified	_IWLPFPVLL_					0	0	0		nc|ENSG00000117500|Q9Y3A6-2|TMED5;ENSG00000117500|ENST00000370282|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3415210155001	2	549.341521	1096.66849	-0.37788	-0.00020758	0.23757	0.00013051	-0.1403	-7.7075E-05	549.3417088922477	47.562	0.16769	47.57	47.522	47.689	0.007412	1221	49	0.885486	0.029444695	0.88396657	359.12805	0	11.941925						177	8	3	NaN	NaN	NaN	0.10053	1	12383	12383		35.745	7.884	1	14677			10860	2146	6343	6472	8586	8586					0.12402159281509739
IWMMAAVM	8	Unmodified	_IWMMAAVM_					0	0	0		nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1;nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4453133972002	1	952.445313	951.438037	1.6368	0.0015589	2.7057	0.002577	4.3425	0.004136	952.4478178777748	24.984	0.096512	24.972	24.924	25.02	-0.012392	315	64	1.4322147	0.03740132	1.4306953	290.9867	0	7.5989075						95	5	2	NaN	NaN	NaN	0.77734	1	6984	6984		12.26	2.2081	1	10214			10861	803	6344	6473	8587	8587					-0.03962456638794265
IWNGSCGFS	9	Unmodified	_IWNGSCGFS_					0	0	0			REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7080023308	2	485.708002	969.401452	2.0227	0.00098242	7.7852	0.0037813	9.8078	0.0047637	485.7120684340403	23.441	0.14485	23.427	23.355	23.5	-0.013294	1335	64	0.8154261	0.038815916	0.81390667	331.2519	0	15.768219						174	7	2	NaN	NaN	NaN	0.14301	1	7429	7429		29.598	14.423	1	21219	+		10862	11787	6345	6474	8588	8588					-0.08447293939502742
IWNGSCGFS	9	Unmodified						0	0	0			REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.708002	969.401452	2.0451	0.00099331	7.8912	0.0038328	9.9363	0.0048261	485.7120206908366	23.417	0.1688	23.417	23.345	23.513	0	1338	67	0.81357855	0.04067087	0.81357855	330.50137		16.52179	-0.0052149	4.5105E-05	-0.00016407	NaN	29.598	218	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23388	+		10863	11787	6345	6474							-0.08447293939502742
IWNGSCGFS	9	Unmodified						0	0	0			REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	REV__ENST00000340967.2_1_9:19423924-19424728:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	485.708002	969.401452	2.0227	0.00098242	7.7852	0.0037813	9.8078	0.0047637	485.7120684340403	23.441	0.14485	23.427	23.355	23.5	-0.013294	1335	64	0.8154261	0.038815916	0.81390667	331.2519		15.768219	0.0052149	-5.7895E-05	0.00016407	NaN	29.598	174	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21219	+		10864	11787	6345	6474							-0.08447293939502742
IWPPFQPPAW	10	Unmodified	_IWPPFQPPAW_					0	0	0		ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8214840651501	2	619.821484	1237.62842	1.3176	0.00081669	-3.2022	-0.0019848	-1.8846	-0.0011681	619.8189853064705	34.541	0.21714	34.541	34.445	34.662	0	1212	73	0.8910048	0.044119358	0.8910048	360.85513	0	17.868256						201	10	2	NaN	NaN	NaN	0.071906	1	17469	17469		49.833	35.791	1	19355			10865	7418	6346	6475	8589	8589					0.01910612610959106
IWPPFQPPAW	10	Unmodified	_IWPPFQPPAW_					0	0	0		ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000524727.5_1_11:47194869-47198404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8214840651501	2	619.821484	1237.62842	0.74551	0.00046208	-1.7916	-0.0011105	-1.0461	-0.00064842	619.8200705449217	34.54	0.24118	34.539	34.467	34.708	-0.00064468	1212	79	0.8910048	0.04778564	0.88948536	360.85513	0	19.353088						184	11	3	NaN	NaN	NaN	0.53991	1	16737	16737		17.799	10.936	1	13732			10866	7418	6346	6475	8590	8590					0.01910612610959106
IWSDAAALEL	10	Unmodified	_IWSDAAALEL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5622519490998	1	1088.56225	1087.55498	0.77044	0.00083867	-9.2839	-0.010106	-8.5134	-0.0092674	1089.552313895347	30.221	0.072393	30.214	30.166	30.238	-0.0064106	72	85	1.5758814	0.049470544	1.5743619	319.6034	0	10.033081						178	4	3	NaN	NaN	NaN	0.10964	1	11975	11975		44.638	9.1155	1	27025			10867	1089	6347	6476	8591	8591					0.014700193778026005
IWSVAVLFV	9	Unmodified	_IWSVAVLFV_					0	0	0			REV__ENSG00000197233|ENST00000335302|OR1J2	REV__ENSG00000197233|ENST00000335302|OR1J2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.6080799297001	1	1033.60808	1032.6008	1.6771	0.0017335	0.58005	0.00059954	2.2572	0.002333	1033.606690788651	37.121	0.048271	37.121	37.097	37.145	0	153	31	1.5281296	0.017711163	1.5281296	310.1255	0	3.5943604						34	3	2	NaN	NaN	NaN	0.29681	1	9902	9902		19.118	8.5134	1	1715	+		10868	11140	6348	6477	8592	8592					0.08580709350712823
IWSYLIARI	9	Unmodified	_IWSYLIARI_					0	0	0		ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5;ENST00000551697.5_1_12:50524466-50529244:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8371341293501	2	567.837134	1133.65972	1.1506	0.00065338	-3.3078	-0.0018783	-2.1572	-0.0012249	567.8349663275774	33.118	0.096523	33.118	33.094	33.19	0	1191	31	0.90387505	0.018377125	0.90387505	366.43765	0	7.450226						85	5	3	NaN	NaN	NaN	0.37272	1	14239	14239		21.835	1.3217	1	6599.2			10869	3225	6349	6478	8593	8593					0.09823185645041121
IWSYLIARI	9	Unmodified						0	0	0		ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5;ENST00000551697.5_1_12:50524466-50529244:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;ENST00000548942.1_1_12:50527593-50529244:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	ENST00000380189.8_1_12:50527593-50531570:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.837134	1133.65972	1.7435	0.00099001	-3.8098	-0.0021634	-2.0664	-0.0011734	568.3353578047465	33.189	0.072411	33.186	33.162	33.235	-0.0024796	1185	25	0.90755045	0.014701664	0.906031	367.9277		5.9601746	0.034285	-0.00033548	0.001078	NaN	21.835	41	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2422.1			10870	3225	6349	6478							0.09823185645041121
IWYGTGLTF	9	Unmodified	_IWYGTGLTF_					0	0	0		ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5353089170999	1	1057.53531	1056.52803	1.0007	0.0010583	-0.07216	-7.6311E-05	0.92854	0.00098196	1057.5374533200834	31.524	0.096556	31.519	31.495	31.592	-0.0044174	66	73	1.579413	0.04239881	1.5778936	320.4375	0	8.60202						124	5	2	NaN	NaN	NaN	0.014943	1	10712	10712		78.398	41.811	1	10710			10871	3258	6350	6479	8594	8594					0.002029555572789832
IWYGTGLTF	9	Unmodified						0	0	0		ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	ENSG00000140284|ENST00000267842|SLC27A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1057.53531	1056.52803	1.2437	0.0013152	-1.4372	-0.0015199	-0.19353	-0.00020467	1057.5314222952597	31.525	0.1207	31.525	31.501	31.621	0	69	55	1.5776473	0.031789064	1.5776473	320.07925		6.4494934	0.0027309	-0.00060871	-0.00012317	NaN	78.398	99	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9177.9			10872	3258	6350	6479							0.002029555572789832
IWYMMWRVYER	11	Unmodified	_IWYMMWRVYER_					0	0	0			REV__ENST00000519875.1_1_8:21997686-21998995:-|nuORF	REV__ENST00000519875.1_1_8:21997686-21998995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.89433143225	2	816.894331	1631.77411	1.7527	0.0014318	-3.4448	-0.002814	-1.692	-0.0013822	816.8931658133716	36.157	0.096474	36.157	36.133	36.229	0	906	40	1.0775855	0.023648262	1.0775855	435.25504	0	9.551941						106	5	3	NaN	NaN	NaN	0.77278	1	20785	20785		1.5054	0.17424	1	8160.1	+		10873	10512	6351	6480	8595	8595					-0.016506159268374176
IYAAPFIIRS	10	Unmodified	_IYAAPFIIRS_					0	0	0			REV__nc|ENSG00000146276|P24046-3|GABRR1	REV__nc|ENSG00000146276|P24046-3|GABRR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.2254864491333	3	384.225486	1149.65463	1.9027	0.00073108	-3.0573	-0.0011747	-1.1545	-0.00044361	384.2242029024963	23.416	0.26541	23.403	23.331	23.596	-0.013294	1437	55	0.7524962	0.03337723	0.75097674	457.52008	0	20.293488						266	12	3	NaN	NaN	NaN	0.65893	1	14297	14297		10.861	3.731	1	45072	+		10874	9941	6352	6481	8596	8596					0.08578881782409553
IYAAPFIIRS	10	Unmodified						0	0	0			REV__nc|ENSG00000146276|P24046-3|GABRR1	REV__nc|ENSG00000146276|P24046-3|GABRR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	384.225486	1149.65463	1.9027	0.00073108	-3.0573	-0.0011747	-1.1545	-0.00044361	384.2242029024963	23.416	0.26541	23.403	23.331	23.596	-0.013294	1437	55	0.7524962	0.03337723	0.75097674	457.52008		20.293488	0.077525	-0.00039114	0.00016748	NaN	10.861	266	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45072	+		10875	9941	6352	6481							0.08578881782409553
IYADLNQNDF	10	Unmodified	_IYADLNQNDF_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7802101461999	2	606.78021	1211.54587	0.82028	0.00049773	4.5117	0.0027376	5.332	0.0032354	607.2868517386152	24.55	0.12067	24.538	24.489	24.61	-0.012394	1173	82	0.91489893	0.049615502	0.9133795	370.62015	0	20.098969						147	6	2	NaN	NaN	NaN	0.507	1	16085	16085		19.164	7.9933	1	22572			10876	673	6353	6482	8597	8597					-0.0514437397855545
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(53)HF	0	0	1		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.28460541985	2	627.284605	1252.55466	2.2883	0.0014354	-2.1074	-0.0013219	0.18088	0.00011346	627.2830449853058	18.412	0.19183	18.412	18.388	18.58	0	1125	79	0.9442611	0.047682643	0.9442611	382.37354	0	19.308838						339	9	4	NaN	NaN	NaN	0.050502	1	17837	17837		52.78	23.884	1	43752			10877	5060	6354	6483	8598	8598		530			-0.061517236137206055
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(53)HF	0	0	1		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.28460541985	2	627.284605	1252.55466	1.7329	0.001087	-1.9945	-0.0012511	-0.26165	-0.00016413	627.283304944499	18.434	0.19201	18.42	18.396	18.588	-0.01395	1122	82	0.9460945	0.04951924	0.9445751	383.116	0	20.052551						312	9	4	NaN	NaN	NaN	0.050502	1	17072	17072		52.78	30.945	1	43336			10878	5060	6354	6483	8599	8599		530			-0.061517236137206055
IYADNQVMHF	10	Unmodified	_IYADNQVMHF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.2871481088	2	619.287148	1236.55974	0.81369	0.00050391	-2.1244	-0.0013156	-1.3107	-0.0008117	619.2862221673103	22.548	0.16884	22.535	22.462	22.631	-0.01354	1161	70	0.9222442	0.0422377	0.92072475	373.5106	0	17.106354						269	8	4	NaN	NaN	NaN	0.075094	1	16704	16704		69.782	51.813	1	39656			10879	5060	6354	6484	8600	8600					-0.04907419751089037
IYADVGEEF	9	Unmodified	_IYADVGEEF_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.4727682398	1	1042.47277	1041.46549	1.6041	0.0016722	3.6276	0.0037816	5.2317	0.0054539	1042.4770160488943	24.936	0.14481	24.936	24.888	25.033	0	177	73	1.5139546	0.042556405	1.5139546	307.21426	0	8.63562						149	7	2	NaN	NaN	NaN	0.10956	1	10259	10259		34.439	3.8287	1	15122			10880	1816	6355	6485	8601	8601					-0.05358235301559944
IYADVGEEF	9	Unmodified	_IYADVGEEF_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.4727682398	1	1042.47277	1041.46549	1.4571	0.001519	2.7571	0.0028742	4.2142	0.0043932	1042.4763737881456	24.936	0.096516	24.924	24.875	24.972	-0.012392	180	64	1.5121819	0.037234902	1.5106624	306.85455	0	7.5557556						124	5	2	NaN	NaN	NaN	0.036546	1	10053	10053		52.624	30.789	1	14109			10881	1816	6355	6485	8602	8602					-0.05358235301559944
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.3131575065499	2	593.313158	1184.61176	1.4606	0.0008666	-0.12612	-7.4829E-05	1.3345	0.00079177	593.3139007165616	34.517	0.14479	34.517	34.445	34.589	0	1170	85	0.91673553	0.051405966	0.91673553	371.45926	0	20.82959						351	7	3	NaN	NaN	NaN	0.23201	1	16003	16003		34.439	11.104	1	45946			10882	955	6356	6486	8603	8603					0.026840669343073387
IYAGGIKSI	9	Unmodified	_IYAGGIKSI_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.2738353808	2	461.273835	920.533118	1.3104	0.00060446	0.4206	0.00019401	1.731	0.00079847	461.2733492406952	19.082	0.072094	19.068	19.044	19.116	-0.014059	1341	34	0.8117308	0.020325482	0.81021136	329.99548	0	8.2630005						63	4	2	NaN	NaN	NaN	0.084037	1	6296	6296		38.131	7.5207	1	5928.1			10883	2393	6357	6487	8604	8604					0.06967259419900529
IYAGQMAVL	9	Unmodified	_IYAGQMAVL_					0	0	0		ENST00000564746.1_1_16:19078986-19083491:+|nuORF;nc|ENSG00000167186|Q99807-2|COQ7;ENSG00000167186|ENST00000321998|COQ7	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.5124649850001	1	965.512465	964.505189	1.4527	0.0014026	0.40869	0.00039459	1.8614	0.0017972	965.5120194632766	26.432	0.12066	26.421	26.373	26.493	-0.011137	237	61	1.4784646	0.035535216	1.4769452	300.32532	0	7.2184143						116	6	2	NaN	NaN	NaN	0.056143	1	7318	7318		44.302	5.6945	1	13144			10884	4532	6358	6488	8605	8605					0.021516131681551087
IYAGQMAVL	9	Unmodified						0	0	0		ENST00000564746.1_1_16:19078986-19083491:+|nuORF;nc|ENSG00000167186|Q99807-2|COQ7;ENSG00000167186|ENST00000321998|COQ7	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	ENST00000564746.1_1_16:19078986-19083491:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	965.512465	964.505189	1.8944	0.001829	-2.319	-0.002239	-0.42462	-0.00040998	965.510583711888	26.408	0.12069	26.408	26.384	26.505	0	240	58	1.4766881	0.03376031	1.4766881	299.96448		6.8578186	-0.0063591	-0.001219	-0.00012852	NaN	44.302	150	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13411			10885	4532	6358	6488							0.021516131681551087
IYAIEEEQF	9	Unmodified	_IYAIEEEQF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2742293113	2	571.274229	1140.53391	1.874	0.0010706	-3.1528	-0.0018011	-1.2788	-0.00073054	571.2725542299125	30.149	0.048267	30.149	30.125	30.173	0	1251	61	0.8670771	0.03682977	0.8670771	351.49405	0	14.929962						93	3	2	NaN	NaN	NaN	0.31737	1	14456	14456		17.799	6.6286	1	14361			10886	2540	6359	6489	8606	8606					-0.030739907217139262
IYAIVKEKY	9	Unmodified	_IYAIVKEKY_					0	0	0		ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8289747462501	2	563.828975	1125.6434	2.004	0.0011299	-3.1481	-0.001775	-1.1441	-0.00064506	563.8269416451565	16.949	0.11992	16.949	16.925	17.045	0	1182	37	0.9093879	0.022047758	0.9093879	368.70416	0	8.939087						137	6	3	NaN	NaN	NaN	0.12866	1	13926	13926		31.675	11.12	1	16852			10887	2364	6360	6490	8607	8607					0.08560059688284127
IYAIVKEKY	9	Unmodified	_IYAIVKEKY_					0	0	0		ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.2217419863667	3	376.221742	1125.6434	1.728	0.00065012	-0.94317	-0.00035484	0.78484	0.00029527	376.2216032757907	16.949	0.095905	16.949	16.925	17.021	0	1416	37	0.76547134	0.022234678	0.76547134	465.52643	0	13.522156						128	5	3	NaN	NaN	NaN	0.53317	1	13928	13928		5.0169	1.4374	1	19909			10888	2364	6360	6490	8608	8608					0.08560059688284127
IYAIVKEKY	9	Unmodified	_IYAIVKEKY_					0	0	0		ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8289747462501	2	563.828975	1125.6434	1.6336	0.00092107	-2.0034	-0.0011296	-0.36984	-0.00020853	563.8274966932372	17.018	0.12002	17.005	16.981	17.101	-0.013294	1182	37	0.9093879	0.022047758	0.90786844	368.70413	0	8.939087						153	6	3	NaN	NaN	NaN	0.13999	1	13493	13493		30.035	6.185	1	18788			10889	2364	6360	6490	8609	8609					0.08560059688284127
IYAIVKEKY	9	Unmodified	_IYAIVKEKY_					0	0	0		ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	ENST00000473576.6_1_13:50235206-50237234:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.2217419863667	3	376.221742	1125.6434	1.7913	0.00067394	-1.0335	-0.00038881	0.75787	0.00028513	376.2211923466409	17.018	0.16798	17.005	16.957	17.125	-0.013294	1416	37	0.76547134	0.022234678	0.7639519	465.52643	0	13.522156						166	8	3	NaN	NaN	NaN	0.070055	1	13494	13494		41.839	21.151	1	23804			10890	2364	6360	6490	8610	8610					0.08560059688284127
IYAKLFNWI	9	Unmodified	_IYAKLFNWI_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3316846107001	2	584.331685	1166.64882	1.3591	0.00079414	-5.6076	-0.0032767	-4.2485	-0.0024825	584.3280326852847	30.946	0.14479	30.946	30.873	31.018	0	1158	127	0.92408	0.07720059	0.92408	374.50162	0	31.287079						244	7	3	NaN	NaN	NaN	0.10956	1	15375	15375		34.439	12.604	1	48734			10891	5711	6361	6491	8611	8611					0.07215783270748943
IYAKLFNWI	9	Unmodified	_IYAKLFNWI_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3316846107001	2	584.331685	1166.64882	1.2554	0.00073354	-5.2691	-0.0030789	-4.0138	-0.0023454	584.3287540555973	30.993	0.16894	30.988	30.891	31.06	-0.0050716	1158	67	0.92408	0.040394723	0.9225606	374.50162	0	16.370789						193	8	3	NaN	NaN	NaN	0.36492	1	14842	14842		15.175	2.1725	1	38064			10892	5711	6361	6491	8612	8612					0.07215783270748943
IYANIFII	8	Unmodified	_IYANIFII_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5658807640001	1	966.565881	965.558604	0.77716	0.00075117	-0.4664	-0.0004508	0.31076	0.00030037	966.5663800604086	35.313	0.14476	35.313	35.241	35.385	0	213	46	1.4926696	0.02662456	1.4926696	303.20618	0	5.408264						114	7	2	NaN	NaN	NaN	0.35933	1	7511	7511		38.608	7.8168	1	11848			10893	1431	6362	6492	8613	8613					0.07444733942327275
IYANIFII	8	Unmodified	_IYANIFII_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5658807640001	1	966.565881	965.558604	0.83144	0.00080364	0.17698	0.00017107	1.0084	0.00097471	966.5654432499036	35.312	0.14485	35.312	35.215	35.36	-4.5776E-05	210	49	1.4944444	0.028395057	1.4929249	303.56668	0	5.7678833						142	7	3	NaN	NaN	NaN	0.59262	1	7361	7361		25.752	3.6255	1	11108			10894	1431	6362	6492	8614	8614					0.07444733942327275
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.78403592635	2	485.784036	969.553519	1.797	0.00087294	-2.4374	-0.0011841	-0.64046	-0.00031113	485.78252908565867	30.27	0.096518	30.27	30.222	30.318	0	1293	76	0.84127116	0.04611945	0.84127116	341.75027	0	18.735138						158	5	3	NaN	NaN	NaN	0.42773	1	7596	7596		12.588	5.0475	1	12310			10895	2285	6363	6493	8615	8615					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5607953861	1	970.560795	969.553519	1.9847	0.0019263	-0.0027771	-2.6954E-06	1.9819	0.0019236	970.5604915973666	30.27	0.14478	30.27	30.222	30.366	0	207	91	1.496219	0.05325198	1.496219	303.90955	0	10.816467						344	7	3	NaN	NaN	NaN	0.025843	1	7598	7598		64.55	24.396	1	47719			10896	2285	6363	6493	8616	8616					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.78403592635	2	485.784036	969.553519	1.1948	0.0005804	-3.5781	-0.0017382	-2.3834	-0.0011578	485.7817682182453	30.269	0.096485	30.263	30.214	30.311	-0.0064106	1287	79	0.8449601	0.047956467	0.84344065	343.24884	0	19.481384						155	5	2	NaN	NaN	NaN	0.24994	1	7456	7456		22.126	4.3274	1	15546			10897	2285	6363	6493	8617	8617					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5607953861	1	970.560795	969.553519	1.0148	0.0009849	-0.30537	-0.00029638	0.70941	0.00068852	970.5602868881631	30.269	0.14475	30.263	30.214	30.359	-0.0064106	201	88	1.4997677	0.051474214	1.4982482	304.63034	0	10.455353						247	7	2	NaN	NaN	NaN	0.023074	1	7457	7457		68.108	20.627	1	46317			10898	2285	6363	6493	8618	8618					0.06752430079700389
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.2973104771001	2	494.29731	986.580068	1.0483	0.00051815	-2.9928	-0.0014793	-1.9445	-0.00096119	494.29567271474775	30.873	0.12062	30.873	30.849	30.97	0	1317	58	0.8265074	0.035062134	0.8265074	335.67172	0	14.239899						81	6	2	NaN	NaN	NaN	0.29681	1	8112	8112		19.118	6.5304	1	8426.2			10899	3601	6364	6494	8619	8619					0.08624118971056305
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5873444876003	1	987.587344	986.580068	1.4129	0.0013954	-0.23122	-0.00022835	1.1817	0.001167	987.5869309074078	30.873	0.096497	30.873	30.825	30.922	0	153	55	1.5281296	0.03188348	1.5281296	310.3161	0	6.4745483						158	5	3	NaN	NaN	NaN	0.25448	1	8113	8113		21.835	2.7167	1	16066			10900	3601	6364	6494	8620	8620					0.08624118971056305
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5873444876003	1	987.587344	986.580068	1.443	0.0014251	-0.78497	-0.00077523	0.65801	0.00064984	987.5863195752055	30.872	0.096565	30.866	30.818	30.915	-0.0057545	150	52	1.5299006	0.030107379	1.5283811	310.67572	0	6.1138916						122	5	2	NaN	NaN	NaN	0.23112	1	7946	7946		23.334	5.5541	1	14687			10901	3601	6364	6494	8621	8621					0.08624118971056305
IYAPTLLVF	9	Unmodified	_IYAPTLLVF_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8075110226501	2	518.807511	1035.60047	1.331	0.00069055	-1.5593	-0.00080898	-0.22828	-0.00011843	518.8056888045371	35.892	0.19277	35.892	35.844	36.036	0	1287	85	0.8449601	0.05159515	0.8449601	342.94254	0	20.940826						159	9	2	NaN	NaN	NaN	0.14945	1	10030	10030		28.667	17.118	1	16616			10902	2065	6365	6495	8622	8622					0.08409289630867534
IYAPTLLVF	9	Unmodified	_IYAPTLLVF_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8075110226501	2	518.807511	1035.60047	1.3552	0.0007031	3.2559	0.0016892	4.6111	0.0023923	518.8094014032553	35.963	0.31337	35.964	35.843	36.157	0.0011024	1230	112	0.8799654	0.06813884	0.878446	357.15005	0	27.655365						635	14	5	NaN	NaN	NaN	0.3389	1	9828	9828		16.417	1.2413	1	159180			10903	2065	6365	6495	8623	8623					0.08409289630867534
IYARLFDWL	9	Unmodified	_IYARLFDWL_					0	0	0		nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19;MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-3|MYO19	nc|ENSG00000278259|Q96H55-3|MYO19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.8267664083002	2	598.826766	1195.63898	0.9159	0.00054846	1.6915	0.0010129	2.6074	0.0015614	599.3307300229751	32.852	0.1448	32.852	32.828	32.973	0	1158	52	0.92408	0.031209052	0.92408	374.39548	0	12.644501						178	7	3	NaN	NaN	NaN	0.28943	1	16341	16341		27.296	10.88	1	39316			10904	6202	6366	6496	8624	8624					0.04898595265376571
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-3|NDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.76637448945	2	525.766374	1049.5182	1.0696	0.00056236	-0.31573	-0.000166	0.75387	0.00039636	525.7663444820741	20.549	0.096283	20.535	20.487	20.584	-0.014141	1215	55	0.8891654	0.03311813	0.88764596	360.82126	0	13.43927						141	5	4	NaN	NaN	NaN	0.45297	1	10389	10389		11.548	5.2982	1	13535			10905	627	6367	6497	8625	8625					-0.004582324481134492
IYATIMDFF	9	Oxidation (M)	_IYATIM(Oxidation (M))DFF_		IYATIM(1)DFF		IYATIM(68)DFF	0	0	1		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7702682366	2	568.770268	1135.52598	1.051	0.00059777	-2.4396	-0.0013875	-1.3886	-0.00078978	568.7686717696744	33.262	0.14479	33.262	33.19	33.335	0	1245	49	0.87076044	0.02945745	0.87076044	353.0058	0	11.942017						188	7	3	NaN	NaN	NaN	0.023074	1	14289	14289		68.108	38.51	1	26639			10906	4681	6368	6498	8626	8626		500			-0.03635841242839888
IYATIMDFF	9	Oxidation (M)	_IYATIM(Oxidation (M))DFF_		IYATIM(1)DFF		IYATIM(140)DFF	0	0	1		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1136.5332600066	1	1136.53326	1135.52598	1.5919	0.0018093	-1.954	-0.0022208	-0.36212	-0.00041156	1136.5305255005371	33.238	0.1448	33.238	33.214	33.359	0	69	52	1.5776473	0.030021429	1.5776473	319.79205	0	6.085388						127	7	2	NaN	NaN	NaN	1.433E-07	1	14291	14291		136.23	97.192	1	11448			10907	4681	6368	6498	8627	8627		500			-0.03635841242839888
IYATIMDFF	9	Oxidation (M)	_IYATIM(Oxidation (M))DFF_		IYATIM(1)DFF		IYATIM(55)DFF	0	0	1		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1136.5332600066	1	1136.53326	1135.52598	0.91686	0.001042	0.00086974	9.8848E-07	0.91773	0.001043	1136.5327133638816	33.261	0.12066	33.259	33.21	33.331	-0.0024757	69	52	1.5776473	0.030021429	1.5761279	319.79205	0	6.085388						121	6	2	NaN	NaN	NaN	0.032764	1	13822	13822		55.494	39.077	1	10100			10908	4681	6368	6498	8628	8628		500			-0.03635841242839888
IYATIMDFF	9	Unmodified	_IYATIMDFF_					0	0	0		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1120.5383453845	1	1120.53835	1119.53107	2.5136	0.0028166	-1.7235	-0.0019313	0.7901	0.00088534	1120.539700894295	37.696	0.048069	37.699	37.675	37.723	0.0028229	63	28	1.5811787	0.015888691	1.5796592	320.5629	0	3.221222						36	3	2	NaN	NaN	NaN	0.043119	1	13244	13244		49.833	29.277	1	2217.4			10909	4681	6368	6499	8629	8629					-0.023915373802083195
IYATIMDFF	9	Unmodified	_IYATIMDFF_					0	0	0		nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	nc|ENSG00000169599|Q9UMS0-3|NFU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7728109255501	2	560.772811	1119.53107	1.629	0.00091349	0.85016	0.00047675	2.4791	0.0013902	561.2750434665238	37.696	0.072086	37.699	37.675	37.747	0.0028229	1254	34	0.8652351	0.020261824	0.86371565	350.82593	0	8.215546						58	4	2	NaN	NaN	NaN	0.24994	1	13245	13245		22.126	4.346	1	4968.5			10910	4681	6368	6499	8630	8630					-0.023915373802083195
IYCHSANQW	9	Unmodified	_IYCHSANQW_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-7|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2452832941	2	561.245283	1120.47601	0.88741	0.00049806	-2.7128	-0.0015226	-1.8254	-0.0010245	561.7443861725069	33.745	0.12065	33.745	33.721	33.842	0	1242	46	0.87260187	0.027620852	0.87260187	353.8093	0	11.19928						149	6	3	NaN	NaN	NaN	0.36492	1	13686	13686		15.175	2.1725	1	17876			10911	2204	6369	6500	8631	8631					-0.07940531128133443
IYCHSANQW	9	Unmodified						0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-7|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.245283	1120.47601	0.71254	0.00039991	-4.2434	-0.0023816	-3.5309	-0.0019817	561.7442181478102	33.744	0.12069	33.742	33.694	33.814	-0.0018463	1239	58	0.87444305	0.034986377	0.8729236	354.55582		14.1857605	-0.0015701	-0.00095924	0.00016088	NaN	15.175	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15991			10912	2204	6369	6500							-0.07940531128133443
IYDALDVSL	9	Unmodified	_IYDALDVSL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5248038102999	1	1008.5248	1007.51753	1.1274	0.001137	2.2585	0.0022777	3.3858	0.0034147	1008.5280762942112	31.042	0.14486	31.042	30.946	31.091	0	186	103	1.5086359	0.060307503	1.5086359	306.2698	0	12.243103						386	7	4	NaN	NaN	NaN	0.094712	1	8883	8883		36.586	6.9881	1	70575			10913	1925	6370	6501	8632	8632					0.014069281121805943
IYDALDVSL	9	Unmodified	_IYDALDVSL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5248038102999	1	1008.5248	1007.51753	1.664	0.0016782	7.6057	0.0076705	9.2697	0.0093487	1008.534100870827	29.715	0.072388	29.715	29.691	29.763	0	165	112	1.5210435	0.06560433	1.5210435	308.78867	0	13.31839						167	4	2	NaN	NaN	NaN	0.31737	1	8884	8884		17.799	2.6236	1	18542			10914	1925	6370	6501	8633	8633					0.014069281121805943
IYDAYVEELE	10	Unmodified	_IYDAYVEELE_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.29007634075	2	622.290076	1242.5656	1.4668	0.00091277	2.5355	0.0015778	4.0023	0.0024906	622.2918232603843	29.449	0.4103	29.449	29.305	29.715	0	1113	118	0.9515937	0.07152015	0.9515937	385.3766	0	28.964264						1002	18	4	NaN	NaN	NaN	0.29898	1	17591	17591		27.789	8.6705	1	138680			10915	2341	6371	6502	8634	8634					-0.04598042758425436
IYDAYVEELE	10	Unmodified						0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.290076	1242.5656	0.83563	0.00052	3.6595	0.0022773	4.4951	0.0027973	622.2925438033443	29.449	0.26541	29.442	29.297	29.562	-0.0070667	1110	106	0.95342636	0.0641709	0.9519069	386.11877		25.987946	-0.0039155	0.00075871	0.00015661	NaN	27.789	775	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121950			10916	2341	6371	6502							-0.04598042758425436
IYDDEIPSL	9	Unmodified	_IYDDEIPSL_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5146330544999	1	1064.51463	1063.50736	1.7742	0.0018887	5.5545	0.0059129	7.3287	0.0078015	1064.5218367149141	27.422	0.28965	27.422	27.326	27.615	0	144	127	1.533442	0.07439482	1.533442	311.08438	0	15.092224						469	13	3	NaN	NaN	NaN	0.028349	1	11273	11273		61.271	21.812	1	53140			10917	947	6372	6503	8635	8635					-0.021856796130578005
IYDFIGEFM	9	Oxidation (M)	_IYDFIGEFM(Oxidation (M))_		IYDFIGEFM(1)		IYDFIGEFM(87)	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1150.5125245645	1	1150.51252	1149.50525	1.8926	0.0021774	-0.13565	-0.00015606	1.7569	0.0020213	1151.514795881473	31.428	0.14478	31.428	31.38	31.525	0	66	49	1.579413	0.028250933	1.579413	320.10318	0	5.7256775						129	7	2	NaN	NaN	NaN	0.011942	1	14775	14775		87.021	69.24	1	13420			10918	1559	6373	6504	8636	8636		180			-0.06352431622508448
IYDFIGEFM	9	Oxidation (M)	_IYDFIGEFM(Oxidation (M))_		IYDFIGEFM(1)		IYDFIGEFM(100)	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1150.5125245645	1	1150.51252	1149.50525	1.6139	0.0018568	-0.68265	-0.0007854	0.93125	0.0010714	1151.51480153162	31.403	0.19302	31.398	31.302	31.495	-0.0050716	66	52	1.579413	0.03001821	1.5778936	320.10318	0	6.0838623						223	9	3	NaN	NaN	NaN	0.0040938	1	14273	14273		104.71	70.272	1	16716			10919	1559	6373	6504	8637	8637		180			-0.06352431622508448
IYDGPIHL	8	Unmodified	_IYDGPIHL_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.2503602845	2	464.25036	926.486168	1.3855	0.00064321	-1.1092	-0.00051494	0.2763	0.00012827	464.25004418493904	22.959	0.048203	22.959	22.935	22.983	0	1341	55	0.8117308	0.03327614	0.8117308	329.9643	0	13.526581						63	3	2	NaN	NaN	NaN	0.79379	1	6522	6522		10.052	2.4613	1	7006.6			10920	2915	6374	6505	8638	8638					0.01998399868762135
IYDGPIHL	8	Unmodified	_IYDGPIHL_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.2503602845	2	464.25036	926.486168	1.0803	0.00050152	-0.43184	-0.00020048	0.64844	0.00030104	464.2504382080377	22.982	0.072294	22.969	22.945	23.017	-0.01354	1344	37	0.8098828	0.022176862	0.8083634	329.2131	0	9.014801						77	4	3	NaN	NaN	NaN	0.35933	1	6393	6393		38.608	24.566	1	6298.6			10921	2915	6374	6505	8639	8639					0.01998399868762135
IYDIFQKL	8	Unmodified	_IYDIFQKL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2947677881501	2	520.294768	1038.57498	1.4596	0.00075943	-1.5367	-0.00079954	-0.077103	-4.0117E-05	520.2944330233671	27.446	0.096556	27.446	27.422	27.519	0	1257	52	0.86339295	0.03131038	0.86339295	350.41068	0	12.707397						110	5	2	NaN	NaN	NaN	0.528	1	10153	10153		29.598	13.182	1	31122			10922	4112	6375	6506	8640	8640					0.057238151084447964
IYDIFQKL	8	Unmodified						0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.294768	1038.57498	1.0631	0.00055313	2.4981	0.0012998	3.5612	0.0018529	520.7977113226618	27.47	0.1448	27.46	27.436	27.581	-0.0095501	1257	43	0.86339295	0.025789201	0.8618735	350.41064		10.466644	0.0069072	0.0018412	-0.00075972	NaN	29.598	150	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24414			10923	4112	6375	6506							0.057238151084447964
IYDIVRNSW	9	Unmodified	_IYDIVRNSW_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.3036554527501	2	583.303655	1164.59276	2.0504	0.001196	-1.3808	-0.00080542	0.66961	0.00039058	583.3031327426337	23.682	0.1205	23.682	23.658	23.778	0	1251	40	0.8670771	0.023943245	0.8670771	351.4073	0	9.703674						194	6	4	NaN	NaN	NaN	0.13999	1	15301	15301		30.035	5.4734	1	33959			10924	2574	6376	6507	8641	8641					0.01704530363304002
IYDIVRNSW	9	Unmodified	_IYDIVRNSW_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3036554527501	2	583.303655	1164.59276	1.8279	0.0010662	-1.8971	-0.0011066	-0.069155	-4.0338E-05	583.3027386156889	23.706	0.1928	23.693	23.669	23.861	-0.013048	1248	85	0.8689189	0.051528275	0.86739945	352.15372	0	20.88327						254	9	4	NaN	NaN	NaN	0.090258	1	14773	14773		37.231	1.9344	1	41251			10925	2574	6376	6507	8642	8642					0.01704530363304002
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.81332468205	2	555.813325	1109.6121	2.1195	0.0011781	-1.5995	-0.00088901	0.52005	0.00028905	555.8127865265142	25.66	0.16891	25.66	25.612	25.781	0	1173	124	0.91489893	0.07539916	0.91489893	371.0034	0	30.575348						486	8	3	NaN	NaN	NaN	8.9076E-05	1	13278	13278		123.58	65.341	1	244540			10926	4076	6377	6508	8643	8643					0.061674866541807205
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.81332468205	2	555.813325	1109.6121	2.3293	0.0012947	-1.0273	-0.000571	1.302	0.00072366	555.8127280476011	25.66	0.26541	25.648	25.6	25.865	-0.011602	1173	121	0.91489893	0.073556185	0.9133795	371.0034	0	29.828003						529	12	3	NaN	NaN	NaN	0.024359	1	12901	12901		66.481	17.831	1	247330			10927	4076	6377	6508	8644	8644					0.061674866541807205
IYDLLSITL	9	Unmodified	_IYDLLSITL_					0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.6081395092	1	1050.60814	1049.60086	1.9427	0.0020411	-0.60382	-0.00063437	1.3389	0.0014067	1050.6078089583825	36.374	0.12055	36.374	36.326	36.446	0	60	52	1.582944	0.030014992	1.582944	321.18118	0	6.090088						104	6	2	NaN	NaN	NaN	0.032764	1	10635	10635		55.494	5.6607	1	10361			10928	735	6378	6509	8645	8645					0.07804664560057972
IYDLLSITL	9	Unmodified						0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1050.60814	1049.60086	1.9232	0.0020206	0.21376	0.00022457	2.137	0.0022451	1050.6083184389172	36.372	0.048134	36.374	36.35	36.398	0.0016747	63	46	1.5811787	0.026483893	1.5796592	320.823		5.3736267	-5.5241E-05	0.00039631	-0.0016424	NaN	55.494	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7857.9			10929	735	6378	6509							0.07804664560057972
IYDLVDRHL	9	Unmodified	_IYDLVDRHL_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.8767458121	3	381.876746	1142.60841	1.3684	0.00052255	-2.2581	-0.00086231	-0.8897	-0.00033976	381.87605135560193	20.357	0.072094	20.357	20.333	20.405	0	1470	34	0.7320868	0.020422697	0.7320868	445.1436	0	12.417969						51	4	2	NaN	NaN	NaN	0.38313	1	14554	14554		13.101	8.0843	1	5890.9			10930	776	6379	6510	8646	8646					0.0428081688032762
IYDMSTVM	8	Unmodified	_IYDMSTVM_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.4212667162002	1	959.421267	958.41399	2.187	0.0020983	1.4493	0.0013905	3.6364	0.0034888	959.4215733587184	25.443	0.072392	25.431	25.407	25.479	-0.012011	237	52	1.4784646	0.030200124	1.4769452	300.3522	0	6.1352234						87	4	2	NaN	NaN	NaN	0.80692	1	7149	7149		8.2903	2.2	1	7749.1			10931	1008	6380	6511	8647	8647					-0.06688018591466971
IYDPLRPV	8	Unmodified	_IYDPLRPV_					0	0	0			REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	REV__ENST00000592626.3_1_19:652824-663133:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.77928489945003	2	486.779285	971.544017	1.8369	0.00089415	-4.4778	-0.0021797	-2.641	-0.0012856	486.7772179033263	27.905	0.072401	27.905	27.857	27.929	0	1335	52	0.8154261	0.031395137	0.8154261	331.24173	0	12.753296						62	4	2	NaN	NaN	NaN	0.74229	1	7661	7661		16.417	2.3751	1	5707.8	+		10932	8569	6381	6512	8648	8648					0.057106617941940385
IYDPNLAFLRF	11	Unmodified	_IYDPNLAFLRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.8691625392499	2	684.869163	1367.72377	1.628	0.001115	-2.3016	-0.0015763	-0.67361	-0.00046134	684.8677762941667	30.994	0.26553	30.994	30.946	31.211	0	1110	103	0.95342636	0.06226015	0.95342636	385.7303	0	25.188751						812	12	5	NaN	NaN	NaN	1.7179999999999999E-22	1	19779	19779		147.08	97.123	1	363730			10933	5743	6382	6513	8649	8649					0.054619210113060035
IYDPNLAFLRF	11	Unmodified	_IYDPNLAFLRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.8691625392499	2	684.869163	1367.72377	1.8908	0.001295	-3.6009	-0.0024662	-1.7101	-0.0011712	684.8668190304876	31.017	0.24136	31.012	30.94	31.181	-0.0050716	1107	109	0.9552588	0.06592256	0.9537394	386.47168	0	26.670471						862	11	6	NaN	NaN	NaN	2.1701E-11	1	18851	18851		109.78	76.359	1	389050			10934	5743	6382	6513	8650	8650					0.054619210113060035
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.29750744235	2	567.297507	1132.58046	2.1755	0.0012341	-4.5199	-0.0025641	-2.3444	-0.00133	567.2956188582784	24.84	0.16893	24.84	24.791	24.96	0	1209	118	0.892844	0.071736634	0.892844	361.96976	0	29.082916						454	8	4	NaN	NaN	NaN	0.012861	1	14190	14190		84.233	44.079	1	408440			10935	836	6383	6514	8651	8651					0.019474939002293468
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.29750744235	2	567.297507	1132.58046	1.7452	0.00099003	-6.0188	-0.0034144	-4.2736	-0.0024244	567.2940373030765	24.84	0.16885	24.827	24.731	24.9	-0.012392	1209	118	0.892844	0.071736634	0.8913246	361.96976	0	29.082916						394	8	4	NaN	NaN	NaN	0.006197	1	13740	13740		100.15	66.721	1	414940			10936	836	6383	6514	8652	8652					0.019474939002293468
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.85116675135	2	691.851167	1381.68778	2.4185	0.0016732	-1.9057	-0.0013184	0.51283	0.0003548	691.8503385880621	26.384	0.28962	26.384	26.336	26.625	0	1068	85	0.97906286	0.051234365	0.97906286	396.06207	0	20.725952						771	13	6	NaN	NaN	NaN	1.7179999999999999E-22	1	19907	19907		147.08	94.304	1	444830			10937	4827	6384	6515	8653	8653					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.85116675135	2	691.851167	1381.68778	1.4701	0.0010171	-0.72616	-0.00050239	0.74394	0.0005147	691.8510256571935	27.205	0.048262	27.205	27.181	27.229	0	1068	34	0.97906286	0.0201267	0.97906286	396.06207	0	8.141876						47	3	2	NaN	NaN	NaN	0.53563	1	19908	19908		17.198	0.34012	1	4565.7			10938	4827	6384	6515	8654	8654					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.85116675135	2	691.851167	1381.68778	1.4816	0.001025	-0.68917	-0.00047681	0.79239	0.00054821	692.3509117607175	27.302	0.048275	27.302	27.277	27.326	0	1074	37	0.9754029	0.021962345	0.9754029	394.58148	0	8.88446						51	3	2	NaN	NaN	NaN	0.18041	1	19909	19909		32.149	21.184	1	4606.9			10939	4827	6384	6515	8655	8655					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85116675135	2	691.851167	1381.68778	1.141	0.0007894	-4.5308	-0.0031346	-3.3898	-0.0023452	692.348530159332	27.759	0.096521	27.75	27.702	27.798	-0.009552	1071	31	0.977233	0.018299997	0.97571355	395.32184	0	7.4029236						74	5	2	NaN	NaN	NaN	0.59348	1	18972	18972		14.45	4.2058	1	7454			10940	4827	6384	6515	8656	8656					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85116675135	2	691.851167	1381.68778	0.9579	0.00066272	-2.9782	-0.0020605	-2.0203	-0.0013978	691.8490959180842	27.494	0.21722	27.484	27.364	27.581	-0.009552	1071	52	0.977233	0.031118333	0.97571355	395.32184	0	12.588348						216	10	3	NaN	NaN	NaN	0.17797	1	18973	18973		32.377	17.952	1	18247			10941	4827	6384	6515	8657	8657					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85116675135	2	691.851167	1381.68778	1.303	0.00090147	-1.3913	-0.00096255	-0.088287	-6.1082E-05	691.8495498207398	27.832	0.14485	27.822	27.774	27.919	-0.009552	1074	37	0.9754029	0.021962345	0.97388345	394.58148	0	8.88446						80	7	2	NaN	NaN	NaN	0.59348	1	18974	18974		14.45	4.8379	1	5322.4			10942	4827	6384	6515	8658	8658					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85116675135	2	691.851167	1381.68778	1.42	0.0009824	-0.81303	-0.0005625	0.60692	0.0004199	691.8493416312378	27.639	0.024136	27.629	27.629	27.653	-0.009552	1071	37	0.977233	0.02195996	0.97571355	395.3218	0	8.883514						47	2	2	NaN	NaN	NaN	0.76276	1	18975	18975		3.261	0.049387	1	4507.8			10943	4827	6384	6515	8659	8659					0.012204190437842044
IYDTSTDRLLW	11	Unmodified	_IYDTSTDRLLW_					0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.85116675135	2	691.851167	1381.68778	1.8993	0.001314	-1.2644	-0.00087479	0.63487	0.00043923	691.8508091666084	26.384	0.33782	26.373	26.3	26.638	-0.011137	1068	73	0.97906286	0.043915153	0.9775434	396.06207	0	17.765106						761	15	5	NaN	NaN	NaN	1.9025E-12	1	18976	18976		115.84	65.527	1	411160			10944	4827	6384	6515	8660	8660					0.012204190437842044
IYDTSTDRLLW	11	Unmodified						0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	691.851167	1381.68778	1.5189	0.0010509	-3.9113	-0.002706	-2.3924	-0.0016552	691.8486762450038	27.591	0.096516	27.591	27.567	27.664	0	1071	40	0.977233	0.023788631	0.977233	395.32184		9.623291	-0.07926	0.00041436	0.00075972	NaN	14.45	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8094.6			10945	4827	6384	6515							0.012204190437842044
IYDTSTDRLLW	11	Unmodified						0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	691.851167	1381.68778	1.3597	0.00094072	-5.7668	-0.0039897	-4.4071	-0.003049	692.3477205651117	26.963	0.072376	26.952	26.88	26.952	-0.010645	1074	46	0.9754029	0.027457356	0.97388345	394.5815		11.107391	-0.12639	-0.0040815	-0.0025897	NaN	17.198	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5277.2			10946	4827	6384	6515							0.012204190437842044
IYDTSTDRLLW	11	Unmodified						0	0	0		ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF	ENSG00000172183|ENST00000306072|ISG20	ENSG00000172183|ENST00000306072|ISG20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	691.851167	1381.68778	1.5337	0.0010611	-4.9926	-0.0034542	-3.459	-0.0023931	691.847958686811	26.697	0.024134	26.687	26.687	26.711	-0.010645	1068	43	0.97906286	0.025625527	0.9775434	396.06207		10.366333	0.15139	-0.0038579	-0.00075972	NaN	147.08	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4150.9			10947	4827	6384	6515							0.012204190437842044
IYDTVIYDFN	10	Unmodified	_IYDTVIYDFN_					0	0	0			REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.5361663137333	3	421.536166	1261.58667	1.8878	0.00079579	-6.1419	-0.002589	-4.254	-0.0017932	421.5336690720567	25.877	0.072418	25.865	25.841	25.914	-0.0116	1395	28	0.7784366	0.016664267	0.77691716	472.7947	0	10.121277						102	4	4	NaN	NaN	NaN	0.71559	1	17248	17248		5.6972	4.0166	1	10184	+		10948	13585	6385	6516	8661	8661					-0.03366032658914264
IYDVLIRL	8	Unmodified	_IYDVLIRL_					0	0	0		nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	nc|ENSG00000165271|Q9H6R4-4|NOL6	nc|ENSG00000165271|Q9H6R4-4|NOL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.81058502785	2	502.810585	1003.60662	1.7305	0.0008701	-0.87044	-0.00043766	0.86004	0.00043244	502.8102409474421	28.291	0.12063	28.291	28.267	28.388	0	1260	52	0.8615505	0.031320512	0.8615505	349.82227	0	12.717346						117	6	3	NaN	NaN	NaN	0.12876	1	8750	8750		58.599	17.139	1	11348			10949	4390	6386	6517	8662	8662					0.10495807862366746
IYDVLIRL	8	Unmodified	_IYDVLIRL_					0	0	0		nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	nc|ENSG00000165271|Q9H6R4-4|NOL6	nc|ENSG00000165271|Q9H6R4-4|NOL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.81058502785	2	502.810585	1003.60662	1.0727	0.00053934	-0.32234	-0.00016208	0.75032	0.00037727	502.81005835395905	28.314	0.12063	28.305	28.281	28.402	-0.0089779	1257	43	0.86339295	0.025791943	0.8618735	350.57034	0	10.472534						120	6	3	NaN	NaN	NaN	0.63486	1	8576	8576		23.118	5.3186	1	9706.5			10950	4390	6386	6517	8663	8663					0.10495807862366746
IYDVYNLFN	9	Unmodified	_IYDVYNLFN_					0	0	0		ENST00000343217.6_1_2:241503143-241503332:+|nuORF	ENST00000343217.6_1_2:241503143-241503332:+|nuORF	ENST00000343217.6_1_2:241503143-241503332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.78476420785	2	580.784764	1159.55498	2.0123	0.0011687	-0.14781	-8.5848E-05	1.8644	0.0010828	580.7850943052855	19.948	0.16836	19.948	19.876	20.045	0	1200	67	0.89836043	0.04046023	0.89836043	364.10425	0	16.398468						213	8	3	NaN	NaN	NaN	0.38313	1	15120	15120		14.425	0.96197	1	31930			10951	6548	6387	6518	8664	8664					-0.018419806222027546
IYDWGYLTMRP	11	Unmodified	_IYDWGYLTMRP_					0	0	0			REV__ENST00000492211.5_1_10:98984829-98984916:-|nuORF	REV__ENST00000492211.5_1_10:98984829-98984916:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.8448301632	2	707.84483	1413.67511	1.1497	0.0008138	-3.3096	-0.0023427	-2.1599	-0.0015289	707.8398887788535	22.139	0.048206	22.125	22.101	22.149	-0.013731	1044	46	0.99369496	0.027430713	0.9921755	401.89108	0	11.094116						78	3	3	NaN	NaN	NaN	0.44296	1	19218	19218		20.513	1.3497	1	6224.6	+		10952	12472	6388	6519	8665	8665					-0.01518315620114663
IYDWGYLTMRP	11	Unmodified						0	0	0			REV__ENST00000492211.5_1_10:98984829-98984916:-|nuORF	REV__ENST00000492211.5_1_10:98984829-98984916:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	707.84483	1413.67511	1.1497	0.0008138	-3.3096	-0.0023427	-2.1599	-0.0015289	707.8398887788535	22.139	0.048206	22.125	22.101	22.149	-0.013731	1044	46	0.99369496	0.027430713	0.9921755	401.89108		11.094116	-0.0070652	-0.0025602	-0.00075972	NaN	20.513	78	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6224.6	+		10953	12472	6388	6519							-0.01518315620114663
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.80242564475	2	558.802426	1115.5903	1.2922	0.00072208	-4.7657	-0.0026631	-3.4736	-0.001941	558.7993898542285	36.205	0.072353	36.205	36.181	36.254	0	1239	34	0.87444305	0.020250916	0.87444305	354.5747	0	8.211456						77	4	3	NaN	NaN	NaN	0.62619	1	13506	13506		4.4131	0	1	5797.1			10954	1079	6389	6520	8666	8666					0.03712681905608406
IYEAYLKNF	9	Unmodified	_IYEAYLKNF_					0	0	0		ENST00000493286.1_1_22:46594271-46615974:+|nuORF;ENSG00000186951|ENST00000407236|PPARA	ENST00000493286.1_1_22:46594271-46615974:+|nuORF	ENST00000493286.1_1_22:46594271-46615974:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.802956961	2	580.802957	1159.59136	1.5534	0.00090221	-0.55077	-0.00031989	1.0026	0.00058232	581.3028739372144	38.345	0.19227	38.349	38.301	38.493	0.0040245	1212	67	0.8910048	0.040455878	0.88948536	361.1229	0	16.396698						347	9	4	NaN	NaN	NaN	0.29681	1	14620	14620		19.118	2.5342	1	38456			10955	5490	6390	6521	8667	8667					0.017948962744867458
IYEKYIQKNN	10	Unmodified	_IYEKYIQKNN_					0	0	0		tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.23471022030003	3	438.23471	1311.6823	1.7481	0.00076606	-7.1065	-0.0031143	-5.3584	-0.0023483	438.2313678453632	22.911	0.096464	22.911	22.863	22.959	0	1386	25	0.78399014	0.014805436	0.78399014	475.9711	0	8.988586						41	5	2	NaN	NaN	NaN	0.76872	1	18979	18979		3.261	1.022	1	2463.8			10956	13759	6391	6522	8668	8668					0.0389274025199029
IYEKYIQKNN	10	Unmodified						0	0	0		tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	438.23471	1311.6823	2.3391	0.0010251	-10.833	-0.0047475	-8.4941	-0.0037224	438.56209723112926	23.031	0.072262	23.017	22.993	23.065	-0.013294	1386	25	0.78399014	0.014805436	0.7824707	475.97113		8.988586	0.053237	-0.0026031	-0.00075972	NaN	3.261	37	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2339.7			10957	13759	6391	6522							0.0389274025199029
IYELATAFTEF	11	Unmodified	_IYELATAFTEF_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.8240863335999	2	652.824086	1303.63362	0.59871	0.00039085	-2.9744	-0.0019418	-2.3757	-0.0015509	652.8222392796758	33.842	0.12068	33.842	33.817	33.938	0	1128	43	0.9424274	0.025669754	0.9424274	381.46793	0	10.390381						81	6	2	NaN	NaN	NaN	0.46001	1	18830	18830		27.296	20.312	1	8710.5			10958	1925	6392	6523	8669	8669					-0.006051731077832301
IYELRTYKL	9	Unmodified	_IYELRTYKL_					0	0	0		ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.23252957333335	3	400.23253	1197.67576	1.7821	0.00071324	-4.5651	-0.0018271	-2.7831	-0.0011139	400.56544404679056	20.14	0.096367	20.126	20.126	20.222	-0.014141	1434	31	0.75435036	0.018540919	0.7528309	458.42978	0	11.267578						69	5	3	NaN	NaN	NaN	0.37272	1	15760	15760		14.854	2.5473	1	4901.9			10959	5341	6393	6524	8670	8670					0.0848284709127256
IYEMVVDVLFL	11	Unmodified	_IYEMVVDVLFL_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.8621572491	2	670.862157	1339.70976	1.2841	0.00086146	1.5817	0.0010611	2.8658	0.0019225	670.8628850397248	29.184	0.12067	29.184	29.16	29.28	0	1062	37	0.9827221	0.021952868	0.9827221	397.6657	0	8.883362						70	6	2	NaN	NaN	NaN	0.7072	1	19408	19408		6.9844	3.4146	1	6449.7			10960	758	6394	6525	8671	8671					0.05349507468008596
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3000501312999	2	595.30005	1188.58555	0.51702	0.00030778	-1.8788	-0.0011184	-1.3618	-0.00081065	595.299202201666	38.492	0.3364	38.492	38.348	38.684	0	1188	97	0.90571284	0.05882591	0.90571284	366.97876	0	23.835205						763	15	4	NaN	NaN	NaN	0.18779	1	16111	16111		26.115	5.5595	1	94928			10961	1008	6395	6526	8672	8672					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3000501312999	2	595.30005	1188.58555	0.38682	0.00023027	-1.1429	-0.0006804	-0.75613	-0.00045013	595.2991443840817	38.179	0.07209	38.179	38.131	38.203	0	1185	70	0.90755045	0.042278767	0.90755045	367.72333	0	17.130615						100	4	3	NaN	NaN	NaN	0.38313	1	16112	16112		14.425	1.8371	1	8888.4			10962	1008	6395	6526	8673	8673					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3000501312999	2	595.30005	1188.58555	1.4793	0.00088065	-1.1814	-0.00070332	0.29788	0.00017733	595.2991037873818	37.145	0.40937	37.145	37.024	37.434	0	1182	115	0.9093879	0.06987083	0.9093879	368.46783	0	28.310425						1675	18	5	NaN	NaN	NaN	0.032826	1	16115	16115		55.413	23.738	1	1011100			10963	1008	6395	6526	8674	8674					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3000501312999	2	595.30005	1188.58555	1.1437	0.00068083	-0.75563	-0.00044983	0.38805	0.00023101	595.2998108582826	38.489	0.26448	38.493	38.349	38.614	0.0040283	1185	91	0.90755045	0.055137336	0.906031	367.72333	0	22.340668						587	12	4	NaN	NaN	NaN	0.18779	1	15499	15499		26.115	8.1453	1	75833			10964	1008	6395	6526	8675	8675					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3000501312999	2	595.30005	1188.58555	1.0791	0.00064238	-0.57113	-0.00034	0.50795	0.00030238	595.2996363545758	38.273	0.19231	38.276	38.108	38.301	0.0034218	1182	82	0.9093879	0.04963696	0.90786844	368.46783	0	20.11203						242	9	2	NaN	NaN	NaN	0.14787	1	15500	15500		28.896	10.926	1	31721			10965	1008	6395	6526	8676	8676					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3000501312999	2	595.30005	1188.58555	1.3812	0.0008222	-0.81076	-0.00048264	0.5704	0.00033956	595.2994271821722	37.142	0.36121	37.145	37.024	37.385	0.0022507	1179	112	0.9112251	0.06802839	0.90970564	369.21222	0	27.563934						1516	16	5	NaN	NaN	NaN	0.030696	1	15501	15501		58.2	27.589	1	832940			10966	1008	6395	6526	8677	8677					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1189.5928237959997	1	1189.59282	1188.58555	2.2554	0.002683	-0.24809	-0.00029513	2.0073	0.0023879	1189.5932024504252	37.142	0.024063	37.145	37.121	37.145	0.0022507	51	52	1.5882392	0.030011892	1.5867198	321.7663	0	6.0802						44	2	2	NaN	NaN	NaN	0.054111	1	15504	15504		45.165	22.047	1	3295.7			10967	1008	6395	6526	8678	8678					-0.0012020223716717737
IYEPNFIFF	9	Unmodified						0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1189.59282	1188.58555	2.2983	0.0027341	-2.0069	-0.0023874	0.2914	0.00034665	1189.5912295952335	37.145	0.072388	37.145	37.097	37.169	0	51	46	1.5882392	0.02647543	1.5882392	321.7663		5.363739	0.00010816	-0.00077934	0.00075972	NaN	45.165	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3914.7			10968	1008	6395	6526							-0.0012020223716717737
IYEQVFAKL	9	Unmodified	_IYEQVFAKL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.81332468205	2	555.813325	1109.6121	1.2538	0.00069688	-1.8719	-0.0010404	-0.61807	-0.00034353	555.8120045804466	24.815	0.12059	24.803	24.731	24.851	-0.012394	1203	52	0.8965218	0.03126645	0.89500237	363.55124	0	12.678955						118	6	3	NaN	NaN	NaN	0.054111	1	12898	12898		45.165	10.726	1	19674			10969	2229	6396	6527	8679	8679					0.061674866541807205
IYEQVFAKL	9	Unmodified						0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.813325	1109.6121	1.213	0.00067419	-3.2814	-0.0018238	-2.0684	-0.0011496	555.8118460521328	24.791	0.096537	24.791	24.767	24.864	0	1206	76	0.894683	0.04598999	0.894683	362.80557		18.649536	-0.0057888	-0.00089029	-0.00015968	NaN	45.165	149	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21985			10970	2229	6396	6527							0.061674866541807205
IYESTTHYYLV	11	Unmodified	_IYESTTHYYLV_					0	0	0		nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.84026771405	2	694.840268	1387.66598	1.4318	0.0009949	-6.2298	-0.0043287	-4.798	-0.0033338	695.3371177070353	26.722	0.048279	26.722	26.698	26.746	0	1062	40	0.9827221	0.023783565	0.9827221	397.5254	0	9.620789						39	3	2	NaN	NaN	NaN	0.7072	1	19958	19958		6.9844	1.0646	1	4063			10971	369	6397	6528	8680	8680					-0.012343857047653728
IYEWHRDYFLQ	11	Unmodified	_IYEWHRDYFLQ_					0	0	0		nc|ENSG00000240771|Q86VW2-2|ARHGEF25;ENSG00000240771|ENST00000286494|ARHGEF25;nc|ENSG00000240771|Q86VW2-3|ARHGEF25	nc|ENSG00000240771|Q86VW2-2|ARHGEF25	nc|ENSG00000240771|Q86VW2-2|ARHGEF25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3778830283501	2	785.377883	1568.74121	1.3099	0.0010287	5.816	0.0045678	7.1259	0.0055965	785.3826284732785	30.994	0.16897	30.994	30.97	31.139	0	966	82	1.0411623	0.04922676	1.0411623	420.6853	0	19.890259						415	8	4	NaN	NaN	NaN	0.53805	1	20719	20719		28.495	15.032	1	86934			10972	6067	6398	6529	8681	8681					-0.02040783453662698
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.2667386302	2	609.266739	1216.51892	1.2268	0.00074746	-0.42379	-0.0002582	0.80304	0.00048926	609.2663075741955	27.639	0.26541	27.639	27.567	27.833	0	1161	64	0.9222442	0.038556516	0.9222442	373.57852	0	15.618317						266	12	4	NaN	NaN	NaN	0.032325	1	16895	16895		58.599	35.265	1	65907			10973	7980	6399	6530	8682	8682					-0.08067437799059007
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.2667386302	2	609.266739	1216.51892	0.71254	0.00043413	-0.55954	-0.00034091	0.153	9.3218E-05	609.2658063632899	27.663	0.36199	27.653	27.581	27.943	-0.009552	1158	67	0.92408	0.040399075	0.9225606	374.32217	0	16.364685						311	16	3	NaN	NaN	NaN	0.071906	1	16223	16223		49.833	27.707	1	70701			10974	7980	6399	6530	8683	8683					-0.08067437799059007
IYFDNDESPHA	11	Unmodified	_IYFDNDESPHA_					0	0	0			REV__ENSG00000175489|ENST00000339007|LRRC25	REV__ENSG00000175489|ENST00000339007|LRRC25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.28057428695	2	654.280574	1306.5466	1.6751	0.001096	-0.78819	-0.0005157	0.88694	0.00058031	654.2804872503407	25.925	0.16895	25.914	25.841	26.01	-0.0116	1119	61	0.9479278	0.03666711	0.94640833	383.68533	0	14.841461						255	8	4	NaN	NaN	NaN	0.62211	1	18038	18038		12.57	1.3994	1	48905	+		10975	10728	6400	6531	8684	8684					-0.09441579329472916
IYFDRIEVVNF	11	Unmodified	_IYFDRIEVVNF_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.8719021934501	2	707.871902	1413.72925	0.99977	0.00070771	-3.6715	-0.002599	-2.6717	-0.0018912	708.3682343781703	29.473	0.096535	29.466	29.417	29.514	-0.0070667	1056	58	0.9863805	0.034738123	0.9848611	398.93268	0	14.0494995						121	5	4	NaN	NaN	NaN	0.20668	1	19221	19221		29.706	11.737	1	7719.6			10976	3599	6401	6532	8685	8685					0.038935998031320196
IYFDRIEVVNF	11	Unmodified						0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	707.871902	1413.72925	0.99704	0.00070577	-3.2165	-0.0022769	-2.2195	-0.0015711	708.3699158807318	29.474	0.072479	29.474	29.449	29.522	0	1062	49	0.9827221	0.029257834	0.9827221	397.45306		11.833069	0.0039165	0.00033754	-0.0010695	NaN	29.706	96	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6791			10977	3599	6401	6532							0.038935998031320196
IYFESLLPN	9	Unmodified	_IYFESLLPN_					0	0	0		ENST00000463001.5_1_1:157765366-157765540:-|nuORF	ENST00000463001.5_1_1:157765366-157765540:-|nuORF	ENST00000463001.5_1_1:157765366-157765540:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2896824102502	2	548.289682	1094.56481	2.4448	0.0013404	2.9778	0.0016327	5.4226	0.0029732	548.291114304562	32.658	0.096539	32.655	32.558	32.655	-0.0031052	1218	22	0.8873258	0.012878597	0.8858064	359.88278	0	5.223297						32	5	2	NaN	NaN	NaN	0.66529	1	12287	12287		2.1763	0.67093	1	1684.4			10978	7090	6402	6533	8686	8686					0.021312073832177703
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7716568326	2	588.771657	1175.52876	1.5325	0.00090228	1.9335	0.0011384	3.4659	0.0020406	588.772243562941	24.526	0.21701	24.526	24.526	24.743	0	1167	100	0.91857195	0.060654342	0.91857195	372.23648	0	24.579193						330	10	4	NaN	NaN	NaN	0.049695	1	15654	15654		47.04	17.442	1	82934			10979	1907	6403	6534	8687	8687					-0.05198249793670584
IYFFHHYEL	9	Unmodified	_IYFFHHYEL_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.5414745923	3	423.541475	1267.60259	1.5647	0.00066274	-0.30133	-0.00012763	1.2634	0.00053511	423.5414860439653	23.634	0.16875	23.634	23.61	23.778	0	1437	37	0.7524962	0.022251546	0.7524962	457.01596	0	13.514099						118	8	2	NaN	NaN	NaN	0.36492	1	18181	18181		17.97	7.6095	1	12554			10980	5247	6404	6535	8688	8688					-0.02050281631341022
IYFIPRNV	8	Unmodified	_IYFIPRNV_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;nc|ENSG00000187257|Q6PCB5-2|RSBN1L;ENSG00000081019|ENST00000261441|RSBN1;ENSG00000187257|ENST00000334955|RSBN1L	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.29510213915	2	511.295102	1020.57565	2.3281	0.0011904	-7.0833	-0.0036216	-4.7551	-0.0024313	511.2915329822778	17.909	0.11994	17.909	17.885	18.005	0	1251	46	0.8670771	0.027626812	0.8670771	351.98712	0	11.215027						167	6	4	NaN	NaN	NaN	0.45125	1	9402	9402		33.698	5.0318	1	36056			10981	913	6405	6536	8689	8689					0.06618654548128688
IYFKNSENLW	10	Unmodified	_IYFKNSENLW_					0	0	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.32987020325	2	657.32987	1312.64519	1.1077	0.00072814	-2.2598	-0.0014854	-1.1521	-0.00075729	657.328256666409	24.454	0.21704	24.454	24.43	24.647	0	1110	49	0.95342636	0.029317856	0.95342636	385.8922	0	11.86618						251	10	3	NaN	NaN	NaN	0.0025223	1	18996	18996		84.233	47.998	1	46256			10982	1377	6406	6537	8690	8690					0.001370687062262732
IYFKNSENLW	10	Unmodified	_IYFKNSENLW_					0	0	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.32987020325	2	657.32987	1312.64519	1.1515	0.00075693	-1.3851	-0.00091049	-0.23362	-0.00015356	657.3288432277917	24.478	0.26532	24.465	24.417	24.682	-0.012747	1110	49	0.95342636	0.029317856	0.9519069	385.8922	0	11.86618						298	12	4	NaN	NaN	NaN	0.013726	1	18156	18156		66.481	33.703	1	44669			10983	1377	6406	6537	8691	8691					0.001370687062262732
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3442606697	2	578.344261	1154.67397	0.93092	0.0005384	-1.0051	-0.00058131	-0.074196	-4.2911E-05	578.3434830006477	31.331	0.19304	31.326	31.277	31.47	-0.0050716	1170	46	0.91673553	0.027546287	0.9152161	371.57013	0	11.165039						234	9	4	NaN	NaN	NaN	0.097143	1	14490	14490		41.785	2.8666	1	61597			10984	5573	6407	6538	8692	8692					0.10281838073319705
IYFQPHVII	9	Unmodified	_IYFQPHVII_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.3238595786001	2	565.32386	1128.63317	2.0929	0.0011832	-2.4368	-0.0013776	-0.34391	-0.00019442	565.3223082714333	28.243	0.19304	28.243	28.146	28.339	0	1191	70	0.90387505	0.042251408	0.90387505	366.45728	0	17.129944						336	9	4	NaN	NaN	NaN	0.49672	1	14042	14042		9.746	0	1	48555	+		10985	8759	6408	6539	8693	8693					0.0739949675371463
IYFTVKEKG	9	Unmodified	_IYFTVKEKG_					0	0	0			REV__tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	REV__tr|U7T0F0|U7T0F0_FUSNUTyrosine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tyrSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.8054996499501	2	542.8055	1083.59645	1.6831	0.00091358	-3.1542	-0.0017121	-1.4711	-0.00079854	542.8037282085769	23.826	0.096462	23.813	23.765	23.861	-0.013048	1242	37	0.87260187	0.022095501	0.8710824	353.9556	0	8.9626465						95	5	3	NaN	NaN	NaN	0.58159	1	11824	11824		6.2502	0.15988	1	13804	+		10986	13563	6409	6540	8694	8694					0.05799200137153093
IYGAILQAIQ	10	Unmodified	_IYGAILQAIQ_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3187742007001	2	545.318774	1088.623	1.3301	0.00072532	-6.186	-0.0033733	-4.8559	-0.002648	545.3154505626368	30.68	0.21723	30.68	30.608	30.825	0	1155	172	0.92591566	0.1046198	0.92591566	375.55963	0	42.434723						826	10	3	NaN	NaN	NaN	0.64889	1	12346	12346		11.548	0.94349	1	223980	+		10987	9675	6410	6541	8695	8695					0.08222889028479585
IYGAILQAIQ	10	Unmodified						0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.318774	1088.623	1.3301	0.00072532	-6.186	-0.0033733	-4.8559	-0.002648	545.3154505626368	30.68	0.21723	30.68	30.608	30.825	0	1155	172	0.92591566	0.1046198	0.92591566	375.55963		42.434723	0.0033941	-0.00063101	0.00075972	NaN	11.548	826	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223980	+		10988	9675	6410	6541							0.08222889028479585
IYGAILQAIQ	10	Unmodified						0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.318774	1088.623	1.453	0.00079235	-5.3558	-0.0029206	-3.9028	-0.0021283	545.315634237874	30.679	0.16888	30.673	30.601	30.77	-0.0057545	1155	142	0.92591566	0.0862003	0.9243962	375.55963		34.963623	-0.0033941	0.00027443	-0.00075972	NaN	11.548	735	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220610	+		10989	9675	6410	6541							0.08222889028479585
IYGAKEGGISR	11	Unmodified	_IYGAKEGGISR_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8143873145501	2	575.814387	1149.61422	2.1974	0.0012653	-4.547	-0.0026182	-2.3496	-0.0013529	575.8113907266456	18.292	0.09593	18.292	18.268	18.364	0	1215	49	0.8891654	0.029425621	0.8891654	360.41415	0	11.927399						87	5	3	NaN	NaN	NaN	0.63477	1	14794	14794		11.739	0.56853	1	10531			10990	3677	6411	6542	8696	8696					0.04539915392001603
IYGEGFQTW	9	Unmodified	_IYGEGFQTW_					0	0	0		nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8|ALG9	nc|ENSG00000086848|Q9H6U8|ALG9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.5047370702	1	1100.50474	1099.49746	1.586	0.0017454	-0.16105	-0.00017724	1.4249	0.0015681	1100.5045207973492	26.722	0.14528	26.722	26.698	26.843	0	135	91	1.5387528	0.053071618	1.5387528	312.03088	0	10.761932						285	7	4	NaN	NaN	NaN	0.024359	1	12816	12816		66.481	8.2457	1	30297			10991	996	6412	6543	8697	8697					-0.04830822827761949
IYGEGFQTW	9	Unmodified	_IYGEGFQTW_					0	0	0		nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8|ALG9	nc|ENSG00000086848|Q9H6U8|ALG9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.5047370702	1	1100.50474	1099.49746	1.5637	0.0017209	-0.35755	-0.00039348	1.2062	0.0013274	1100.5043258225992	26.722	0.26546	26.711	26.663	26.928	-0.010645	135	76	1.5387528	0.044233322	1.5372335	312.03088	0	8.969696						311	12	3	NaN	NaN	NaN	7.2154E-36	1	12486	12486		187.6	108.4	1	33088			10992	996	6412	6543	8698	8698					-0.04830822827761949
IYGGTYML	8	Unmodified	_IYGGTYML_					0	0	0		ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.4437167178002	1	917.443717	916.43644	2.1443	0.0019672	-1.232	-0.0011303	0.91222	0.00083691	917.4430392455437	26.191	0.19307	26.191	26.143	26.336	0	303	97	1.4393384	0.05701983	1.4393384	292.59338	0	11.591187						303	9	3	NaN	NaN	NaN	0.044274	1	6349	6349		81.001	27.678	1	30218			10993	614	6413	6544	8699	8699					-0.02512051131543558
IYGGTYML	8	Unmodified	_IYGGTYML_					0	0	0		ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	917.4437167178002	1	917.443717	916.43644	1.8477	0.0016952	-1.7584	-0.0016132	0.089309	8.1936E-05	917.4426319090894	26.215	0.16887	26.204	26.156	26.324	-0.011137	300	97	1.4411188	0.05701983	1.4395994	292.95532	0	11.591156						279	8	3	NaN	NaN	NaN	0.032194	1	6222	6222		86.318	35.578	1	28714			10994	614	6413	6544	8700	8700					-0.02512051131543558
IYGGTYML	8	Oxidation (M)	_IYGGTYM(Oxidation (M))L_		IYGGTYM(1)L		IYGGTYM(81)L	0	0	1		ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4386313399002	1	933.438631	932.431355	2.1354	0.0019933	0.064653	6.035E-05	2.2001	0.0020536	933.4388909812307	23.007	0.16849	23.007	22.959	23.128	0	285	67	1.4500183	0.039159417	1.4500183	294.68958	0	7.958435						265	8	3	NaN	NaN	NaN	0.044274	1	6649	6649		81.001	33.68	1	29632			10995	614	6413	6545	8701	8701		63			-0.03756354994152389
IYGGTYML	8	Oxidation (M)	_IYGGTYM(Oxidation (M))L_		IYGGTYM(1)L		IYGGTYM(59)L	0	0	1		ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	ENST00000491154.1_1_X:153669338-153669692:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4386313399002	1	933.438631	932.431355	1.6724	0.0015611	0.18037	0.00016837	1.8528	0.0017295	933.4395623073204	23.031	0.19273	23.017	22.969	23.162	-0.013294	285	121	1.4500183	0.0712595	1.4484988	294.68958	0	14.482208						325	9	3	NaN	NaN	NaN	0.12449	1	6507	6507		59.445	22.143	1	33316			10996	614	6413	6545	8702	8702		63			-0.03756354994152389
IYGGYGKG	8	Unmodified	_IYGGYGKG_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.4093801220001	1	814.40938	813.402104	1.8491	0.0015059	4.5193	0.0036806	6.3684	0.0051865	814.4126845504297	29.57	0.096537	29.57	29.546	29.642	0	423	55	1.3679651	0.032193303	1.3679651	278.60507	0	6.55661						107	5	2	NaN	NaN	NaN	0.82332	1	4931	4931		6.0903	0.62448	1	9771	+		10997	10729	6414	6546	8703	8703					-0.012061312281389291
IYGGYGKG	8	Unmodified						0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	814.40938	813.402104	1.8491	0.0015059	4.5193	0.0036806	6.3684	0.0051865	814.4126845504297	29.57	0.096537	29.57	29.546	29.642	0	423	55	1.3679651	0.032193303	1.3679651	278.60507		6.55661	0.0039531	-0.00035937	0.00075972	NaN	6.0903	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9771	+		10998	10729	6414	6546							-0.012061312281389291
IYGHWSIMKW	10	Unmodified	_IYGHWSIMKW_					0	0	0		ENST00000511584.2_1_19:19627047-19637070:+|nuORF;ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	ENST00000511584.2_1_19:19627047-19637070:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.89010937066666	3	440.890109	1319.6485	1.0586	0.00046674	-1.042	-0.00045942	0.016601	7.3193E-06	440.88982855228204	24.743	0.072392	24.743	24.719	24.791	0	1356	37	0.8024889	0.022188902	0.8024889	487.1713	0	13.470337						69	4	3	NaN	NaN	NaN	0.71345	1	19105	19105		7.1304	4.4262	1	4362.8			10999	5449	6415	6547	8704	8704					0.0014604027924178808
IYGLFLWR	8	Unmodified	_IYGLFLWR_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.3054698602	2	534.30547	1066.59639	1.6424	0.00087756	6.397	0.003418	8.0395	0.0042955	534.3090875559292	36.229	0.12051	36.229	36.205	36.326	0	1209	43	0.892844	0.025744617	0.892844	362.23886	0	10.444946						99	6	2	NaN	NaN	NaN	0.71635	1	11423	11423		18.034	5.0316	1	9099.6	+		11000	13060	6416	6548	8705	8705					0.06575244927785207
IYGLFLWR	8	Unmodified						0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.30547	1066.59639	1.6424	0.00087756	6.397	0.003418	8.0395	0.0042955	534.3090875559292	36.229	0.12051	36.229	36.205	36.326	0	1209	43	0.892844	0.025744617	0.892844	362.23886		10.444946	0.00029732	-5.2582E-05	-0.0010792	NaN	18.034	99	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9099.6	+		11001	13060	6416	6548							0.06575244927785207
IYGLFLWR	8	Unmodified						0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|64|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.30547	1066.59639	1.3371	0.00071444	6.5286	0.0034883	7.8658	0.0042027	534.308535598716	36.228	0.096424	36.229	36.205	36.301	0.0011024	1203	37	0.8965218	0.022064447	0.89500237	363.73102		8.951843	-0.00029732	8.8064E-05	0.0010792	NaN	18.034	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6706.1	+		11002	13060	6416	6548							0.06575244927785207
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.81058502785	2	532.810585	1063.60662	1.9145	0.0010201	-1.6185	-0.00086237	0.29597	0.00015769	532.8097776867144	26.65	0.169	26.65	26.601	26.77	0	1266	85	0.85786515	0.05155611	0.85786515	348.06	0	20.917755						308	8	4	NaN	NaN	NaN	0.002833	1	11300	11300		108.51	71.207	1	58491			11003	3040	6417	6549	8706	8706					0.07735807862354704
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.81058502785	2	532.810585	1063.60662	0.74344	0.00039611	-0.61562	-0.00032801	0.12781	6.8099E-05	532.810410417412	26.673	0.16894	26.663	26.614	26.783	-0.010643	1266	91	0.85786515	0.055232704	0.8563457	348.06	0	22.409454						316	8	4	NaN	NaN	NaN	0.014943	1	11040	11040		78.398	41.095	1	58582			11004	3040	6417	6549	8707	8707					0.07735807862354704
IYGLVVAVL	9	Unmodified	_IYGLVVAVL_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5971808924002	1	946.597181	945.589904	1.2614	0.0011941	0.14868	0.00014074	1.4101	0.0013348	946.5966109525112	34.516	0.16882	34.515	34.467	34.636	-0.0006485	249	73	1.4713576	0.042637706	1.4698381	298.96582	0	8.663605						240	8	3	NaN	NaN	NaN	0.024982	1	6845	6845		65.676	21.044	1	34491			11005	5441	6418	6550	8708	8708					0.11493306976421991
IYGLVVAVL	9	Unmodified						0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	946.597181	945.589904	1.7403	0.0016474	0.43186	0.00040879	2.1722	0.0020562	946.5972293941018	34.517	0.16891	34.517	34.469	34.638	0	249	76	1.4713576	0.044426084	1.4713576	298.96582		9.026978	0.00096601	0.00013946	0.00075972	NaN	65.676	249	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35941			11006	5441	6418	6550							0.11493306976421991
IYGPIESTI	9	Unmodified	_IYGPIESTI_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5298891882002	1	992.529889	991.522613	2.5621	0.002543	-1.3261	-0.0013162	1.2361	0.0012269	992.5284989244648	25.443	0.28952	25.443	25.371	25.66	0	237	97	1.4784646	0.056880593	1.4784646	300.21005	0	11.549896						405	13	2	NaN	NaN	NaN	0.002833	1	8274	8274		108.51	36.517	1	117530			11007	4255	6419	6551	8709	8709					0.026512319748235313
IYGPIESTI	9	Unmodified	_IYGPIESTI_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5298891882002	1	992.529889	991.522613	2.282	0.002265	-0.766	-0.00076028	1.516	0.0015047	992.5292281023741	25.443	0.19301	25.431	25.358	25.551	-0.012011	237	127	1.4784646	0.07467961	1.4769452	300.21005	0	15.1640625						369	9	2	NaN	NaN	NaN	0.00050979	1	8111	8111		115.51	30.631	1	112850			11008	4255	6419	6551	8710	8710					0.026512319748235313
IYGSDPILSL	10	Unmodified	_IYGSDPILSL_					0	0	0			REV__ENST00000429404.1_1_10:60896824-60897136:-|nuORF	REV__ENST00000429404.1_1_10:60896824-60897136:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2949647534001	2	539.294965	1076.57538	1.9018	0.0010256	-1.1176	-0.00060273	0.78414	0.00042288	539.2946824709943	19.684	0.048	19.684	19.66	19.708	0	1278	52	0.85049206	0.031334043	0.85049206	345.01538	0	12.711182						74	3	2	NaN	NaN	NaN	0.64158	1	11836	11836		12.049	1.9971	1	6235.8	+		11009	12142	6420	6552	8711	8711					0.04015190037625871
IYGSSWKYSTF	11	Unmodified	_IYGSSWKYSTF_					0	0	0		ENST00000537553.5_1_12:30862838-30863444:-|nuORF;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2	ENST00000537553.5_1_12:30862838-30863444:-|nuORF	ENST00000537553.5_1_12:30862838-30863444:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.82187799565	2	669.821878	1337.6292	1.8603	0.0012461	-0.49267	-0.00033	1.3676	0.00091607	669.8215333907808	23.224	0.1206	23.224	23.224	23.345	0	1056	49	0.9863805	0.029264152	0.9863805	399.15247	0	11.842163						98	6	2	NaN	NaN	NaN	0.18041	1	19364	19364		32.149	14.18	1	10369			11010	1784	6421	6553	8712	8712					-0.02610637530688109
IYGSSWKYSTF	11	Unmodified	_IYGSSWKYSTF_					0	0	0		ENST00000537553.5_1_12:30862838-30863444:-|nuORF;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2	ENST00000537553.5_1_12:30862838-30863444:-|nuORF	ENST00000537553.5_1_12:30862838-30863444:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.82187799565	2	669.821878	1337.6292	1.7804	0.0011926	-0.94429	-0.00063251	0.83612	0.00056005	669.8206823875648	23.272	0.096489	23.258	23.234	23.331	-0.013294	1056	94	0.9863805	0.05675137	0.9848611	399.15247	0	22.96521						148	5	3	NaN	NaN	NaN	0.22541	1	18499	18499		28.296	10.515	1	12003			11011	1784	6421	6553	8713	8713					-0.02610637530688109
IYGYLQELIF	10	Unmodified	_IYGYLQELIF_					0	0	0		nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.83953943255	2	629.839539	1257.66453	1.4378	0.00090558	-3.483	-0.0021937	-2.0452	-0.0012881	629.8370753463468	36.567	0.12049	36.567	36.543	36.663	0	1110	64	0.95342636	0.0384984	0.95342636	386.06787	0	15.58902						225	6	3	NaN	NaN	NaN	0.26776	1	17956	17956		37.302	20.444	1	21043			11012	2439	6422	6554	8714	8714					0.04600024997125729
IYGYTFYSI	9	Unmodified	_IYGYTFYSI_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.5455392524	1	1126.54554	1125.53826	2.187	0.0024637	-1.2334	-0.0013895	0.95353	0.0010742	1126.5446394842709	30.342	0.16892	30.342	30.27	30.439	0	66	85	1.579413	0.04945481	1.579413	320.1841	0	10.025665						416	8	4	NaN	NaN	NaN	0.00020136	1	13899	13899		116.74	48.628	1	52461			11013	5337	6423	6555	8715	8715					-0.019484815081341367
IYGYTFYSI	9	Unmodified	_IYGYTFYSI_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.5455392524	1	1126.54554	1125.53826	0.93126	0.0010491	-0.43166	-0.00048628	0.4996	0.00056282	1126.5442679454318	30.341	0.14477	30.335	30.287	30.431	-0.0064106	60	79	1.582944	0.04591751	1.5814246	320.89993	0	9.308563						361	7	4	NaN	NaN	NaN	0.012648	1	13471	13471		84.879	40.576	1	50712			11014	5337	6423	6555	8716	8716					-0.019484815081341367
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5251381613	1	1089.52514	1088.51786	2.9713	0.0032373	-1.3369	-0.0014566	1.6343	0.0017806	1089.5239377779126	25.732	0.33779	25.732	25.684	26.022	0	108	172	1.5546752	0.10088432	1.5546752	315.29907	0	20.460052						1086	15	5	NaN	NaN	NaN	3.9799E-05	1	12312	12312		126.58	79.443	1	469940			11015	1978	6424	6556	8717	8717					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2662073139501	2	545.266207	1088.51786	2.0611	0.0011238	-0.4612	-0.00025148	1.5999	0.00087237	545.2658824309922	25.732	0.19304	25.721	25.648	25.841	-0.0116	1251	85	0.8670771	0.05155611	0.8655577	351.69458	0	20.911652						382	9	3	NaN	NaN	NaN	0.24994	1	12006	12006		22.126	2.8416	1	54042			11016	1978	6424	6556	8718	8718					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5251381613	1	1089.52514	1088.51786	2.3865	0.0026001	-0.5837	-0.00063596	1.8028	0.0019642	1089.5247448918788	25.732	0.33786	25.721	25.672	26.01	-0.0116	108	163	1.5546752	0.09555948	1.5531558	315.29904	0	19.380127						1033	15	5	NaN	NaN	NaN	2.4698E-12	1	12008	12008		151.71	83.605	1	468120			11017	1978	6424	6556	8719	8719					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5251381613	1	1089.52514	1088.51786	1.0138	0.0011046	0.87321	0.00095138	1.887	0.002056	1089.525978916944	27.228	0.096519	27.218	27.194	27.291	-0.010124	111	58	1.5529068	0.0336138	1.5513873	314.9404	0	6.817108						112	5	2	NaN	NaN	NaN	0.18779	1	12009	12009		26.115	10.94	1	8252.9			11018	1978	6424	6556	8720	8720					-0.022856521679386788
IYGYVAEQF	9	Unmodified						0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1089.52514	1088.51786	1.8311	0.0019951	0.22411	0.00024417	2.0552	0.0022392	1089.5283564884899	27.084	0.048285	27.084	27.084	27.133	0	111	43	1.5529068	0.024761558	1.5529068	314.9404		5.02182	-0.066949	-0.00041883	0.00075972	NaN	26.115	82	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4562.1			11019	1978	6424	6556							-0.022856521679386788
IYGYVAEQF	9	Unmodified						0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.266207	1088.51786	1.9498	0.0010631	-0.57035	-0.00031099	1.3794	0.00075215	545.2660345759891	25.757	0.16888	25.757	25.684	25.853	0	1239	88	0.87444305	0.053394496	0.87444305	354.68228		21.657318	0.017995	-7.1306E-05	0.0044427	NaN	22.126	392	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44042			11020	1978	6424	6556							-0.022856521679386788
IYGYVDATY	9	Unmodified	_IYGYVDATY_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.4935036819	1	1064.4935	1063.48623	2.0543	0.0021868	-0.83806	-0.00089211	1.2163	0.0012947	1064.492689160825	23.658	0.16872	23.658	23.634	23.803	0	144	106	1.533442	0.06195295	1.533442	311.08447	0	12.568207						310	8	3	NaN	NaN	NaN	3.3858E-07	1	11269	11269		128.99	76.233	1	39569			11021	3375	6425	6557	8721	8721					-0.042976449218940616
IYGYVDATY	9	Unmodified	_IYGYVDATY_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.4935036819	1	1064.4935	1063.48623	1.6854	0.0017941	0.2651	0.0002822	1.9505	0.0020763	1064.4940082827732	23.682	0.16865	23.669	23.621	23.789	-0.013048	141	88	1.5352125	0.05131066	1.5336931	311.44363	0	10.409241						338	8	4	NaN	NaN	NaN	0.00080915	1	11008	11008		114.61	70.305	1	39914			11022	3375	6425	6557	8722	8722					-0.042976449218940616
IYHDNCMFT	9	Unmodified	_IYHDNCMFT_					0	0	0			REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF	REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.23352697705	2	572.233527	1142.4525	2.158	0.0012349	-11.547	-0.0066078	-9.3894	-0.0053729	572.2273438421411	25.732	0.16888	25.732	25.684	25.853	0	1215	55	0.8891654	0.033114612	0.8891654	360.44098	0	13.423645						226	8	4	NaN	NaN	NaN	0.39244	1	14534	14534		14.042	1.4537	1	44793	+		11023	9364	6426	6558	8723	8723					-0.11302712956967298
IYHHTGNNTF	10	Unmodified	_IYHHTGNNTF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2807116727	2	602.280712	1202.54687	0.73525	0.00044283	-0.98197	-0.00059142	-0.24672	-0.00014859	602.2808807807286	12.652	0.16808	12.652	12.604	12.772	0	1194	40	0.902037	0.023894131	0.902037	365.4407	0	9.680206						180	8	4	NaN	NaN	NaN	0.22448	1	16542	16542		33.425	12.87	1	16347			11024	3843	6427	6559	8724	8724					-0.04630114818974107
IYHHTGNNTF	10	Unmodified	_IYHHTGNNTF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH;ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.2807116727	2	602.280712	1202.54687	0.70688	0.00042574	-1.4194	-0.00085491	-0.71257	-0.00042917	602.2798157556632	12.75	0.24	12.741	12.693	12.933	-0.00947	1191	34	0.90387505	0.020218074	0.9023556	366.18533	0	8.190918						175	11	3	NaN	NaN	NaN	0.026551	1	15890	15890		60.984	39.149	1	15439			11025	3843	6427	6559	8725	8725					-0.04630114818974107
IYHINHEIFRM	11	Unmodified	_IYHINHEIFRM_					0	0	0		ST8SIA5|p.Q144H|1|0.31|ENSG00000101638|chr18:46688799-46688799|C/A|missense_variant	ST8SIA5|p.Q144H|1|0.31|ENSG00000101638|chr18:46688799-46688799|C/A|missense_variant	ST8SIA5|p.Q144H|1|0.31|ENSG00000101638|chr18:46688799-46688799|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.87699595885	2	736.876996	1471.73944	1.6084	0.0011852	-5.1451	-0.0037913	-3.5367	-0.0026061	736.8730792803609	28.388	0.048248	28.388	28.363	28.412	0	1014	46	1.0119673	0.027395308	1.0119673	409.12473	0	11.075562						87	3	3	NaN	NaN	NaN	0.67772	1	20481	20481		8.9191	2.4892	1	5025.4			11026	13694	6428	6560	8726	8726					0.022438842566998574
IYHPNVDKL	9	Unmodified	_IYHPNVDKL_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.8695912375666	3	366.869591	1097.58694	2.0065	0.00073612	-2.6057	-0.00095595	-0.5992	-0.00021983	366.86848731895793	16.946	0.14384	16.933	16.861	17.005	-0.013294	1419	37	0.76361835	0.022237062	0.7620989	464.54288	0	13.5278015						96	7	2	NaN	NaN	NaN	0.13602	1	12425	12425		21.85	3.8807	1	9656.3			11027	5093	6429	6561	8727	8727					0.04205431851596586
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7982059341001	2	575.798206	1149.58186	1.4332	0.00082525	-2.4163	-0.0013913	-0.98305	-0.00056604	575.7967820646168	20.694	0.096439	20.694	20.67	20.766	0	1203	46	0.8965218	0.02758205	0.8965218	363.39612	0	11.180115						151	5	3	NaN	NaN	NaN	0.064658	1	14791	14791		50.831	21.935	1	40012			11028	5615	6430	6562	8728	8728					0.013051279890078149
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7982059341001	2	575.798206	1149.58186	0.91262	0.00052548	-1.5045	-0.00086629	-0.59189	-0.00034081	575.797621850936	20.742	0.09642	20.728	20.68	20.776	-0.014088	1203	67	0.8965218	0.040434003	0.89500237	363.39612	0	16.389526						145	5	3	NaN	NaN	NaN	0.2358	1	14287	14287		32.453	7.4917	1	37453			11029	5615	6430	6562	8729	8729					0.013051279890078149
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.76617752420003	2	494.766178	987.517802	2.0151	0.00099699	-2.1061	-0.001042	-0.090982	-4.5015E-05	494.7648449540421	21.657	0.1687	21.657	21.609	21.778	0	1287	97	0.8449601	0.05905527	0.8449601	343.1615	0	23.983948						538	8	4	NaN	NaN	NaN	0.024982	1	8129	8129		65.676	32.539	1	175920			11030	1494	6431	6563	8730	8730					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.76617752420003	2	494.766178	987.517802	1.3515	0.0006687	-1.1842	-0.00058591	0.16733	8.2789E-05	494.76562517220265	21.657	0.21651	21.643	21.595	21.812	-0.013897	1287	97	0.8449601	0.05905527	0.84344065	343.1615	0	23.983978						550	10	4	NaN	NaN	NaN	0.055365	1	7967	7967		44.632	5.7146	1	174970			11031	1494	6431	6563	8731	8731					0.023543926227148404
IYIDRFEDL	9	Unmodified	_IYIDRFEDL_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3033211017502	2	592.303321	1182.59209	1.578	0.00093468	0.10983	6.5052E-05	1.6879	0.00099973	592.8045239757381	25.588	0.193	25.576	25.528	25.721	-0.0116	1167	76	0.91857195	0.045930386	0.9170525	372.2107	0	18.611267						213	9	3	NaN	NaN	NaN	0.097143	1	15321	15321		36.235	6.6365	1	45085			11032	3768	6432	6564	8732	8732					0.008096909235973726
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.3056668254501	2	541.305667	1080.59678	1.9896	0.001077	-8.9171	-0.0048269	-6.9275	-0.0037499	541.801343466687	24.936	0.28957	24.936	24.864	25.153	0	1236	82	0.876284	0.04969603	0.876284	355.4616	0	20.159027						648	13	6	NaN	NaN	NaN	0.028569	1	12025	12025		60.984	28.531	1	308140			11033	1196	6433	6565	8733	8733					0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.3056668254501	2	541.305667	1080.59678	1.8663	0.0010102	-9.4375	-0.0051086	-7.5712	-0.0040983	541.8013995413428	24.96	0.2654	24.948	24.851	25.117	-0.012394	1236	82	0.876284	0.04969603	0.8747646	355.4616	0	20.159027						659	12	6	NaN	NaN	NaN	0.21451	1	11707	11707		24.4	5.1155	1	287850			11034	1196	6433	6565	8734	8734					0.059706198569983826
IYIGKRRG	8	Unmodified	_IYIGKRRG_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5894101731002	1	962.58941	961.582134	1.9282	0.0018561	3.2162	0.0030959	5.1445	0.004952	962.593789548652	33.937	0.072399	33.936	33.911	33.984	-0.0012474	180	34	1.5121819	0.019503951	1.5106624	307.18756	0	3.9620667						44	4	2	NaN	NaN	NaN	0.84876	1	7228	7228		0.39566	0	1	2493.5			11035	2086	6434	6566	8735	8735					0.0998059249951666
IYIGLLQQL	9	Unmodified	_IYIGLLQQL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8236924031002	2	530.823692	1059.63283	0.93301	0.00049527	-2.4043	-0.0012762	-1.4713	-0.00078098	530.8221224894468	33.576	0.072296	33.576	33.552	33.624	0	1212	46	0.8910048	0.02759105	0.8910048	361.523	0	11.194977						121	4	3	NaN	NaN	NaN	0.062836	1	11090	11090		41.46	14.729	1	14632			11036	3044	6435	6567	8736	8736					0.10540077033874695
IYIIFSVLH	9	Unmodified	_IYIIFSVLH_					0	0	0			REV__ENST00000245479.2_1_17:70121293-70121485:+|nuORF	REV__ENST00000245479.2_1_17:70121293-70121485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8262350920501	2	552.826235	1103.63792	1.3569	0.00075015	-4.4465	-0.0024581	-3.0895	-0.001708	552.8240719674378	23.754	0.072308	23.754	23.73	23.803	0	1221	37	0.885486	0.022078753	0.885486	359.0999	0	8.953827						77	4	3	NaN	NaN	NaN	0.11467	1	13008	13008		33.698	1.2455	1	11209	+		11037	11498	6436	6568	8737	8737					0.09024380896471484
IYIIFSVLH	9	Unmodified						0	0	0			REV__ENST00000245479.2_1_17:70121293-70121485:+|nuORF	REV__ENST00000245479.2_1_17:70121293-70121485:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.826235	1103.63792	1.3569	0.00075015	-4.4465	-0.0024581	-3.0895	-0.001708	552.8240719674378	23.754	0.072308	23.754	23.73	23.803	0	1221	37	0.885486	0.022078753	0.885486	359.0999		8.953827	-0.017432	-0.00022944	-0.00016018	NaN	33.698	77	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11209	+		11038	11498	6436	6568							0.09024380896471484
IYIINVHSM	9	Unmodified	_IYIINVHSM_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2917021704501	2	545.291702	1088.56885	1.2849	0.00070065	-2.0145	-0.0010985	-0.72963	-0.00039786	545.2910521127553	24.068	0.07235	24.068	24.044	24.116	0	1167	55	0.91857195	0.03305739	0.91857195	372.58118	0	13.408356						116	4	3	NaN	NaN	NaN	0.38313	1	12330	12330		14.425	1.8371	1	10301			11039	1528	6437	6569	8738	8738					0.0281097360525564
IYIINVHSM	9	Unmodified	_IYIINVHSM_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2917021704501	2	545.291702	1088.56885	1.5875	0.00086567	0.090981	4.9611E-05	1.6785	0.00091528	545.2919464913565	24.092	0.07242	24.079	24.055	24.127	-0.012749	1164	52	0.9204082	0.031215787	0.91888875	373.32596	0	12.661407						103	4	3	NaN	NaN	NaN	0.38313	1	12024	12024		14.425	5.3018	1	8668.6			11040	1528	6437	6569	8739	8739					0.0281097360525564
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.33730130485	2	584.337301	1166.66005	2.2235	0.0012993	-2.2537	-0.0013169	-0.030122	-1.7601E-05	584.3359943099667	19.012	0.1919	19.012	18.964	19.156	0	1179	79	0.9112251	0.047739267	0.9112251	369.29184	0	19.34729						410	9	3	NaN	NaN	NaN	0.12866	1	15381	15381		36.586	14.751	1	54690			11041	1331	6438	6570	8740	8740					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.8939596921	3	389.89396	1166.66005	1.3686	0.00053359	-2.9348	-0.0011443	-1.5663	-0.00061069	389.89292118400505	20.333	0.16861	20.319	20.295	20.463	-0.014141	1455	49	0.7413668	0.02969122	0.73984736	450.67563	0	18.049255						131	8	2	NaN	NaN	NaN	0.13602	1	14846	14846		30.61	19.143	1	15914			11042	1331	6438	6570	8741	8741					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.8939596921	3	389.89396	1166.66005	1.5991	0.00062349	-1.3091	-0.0005104	0.29004	0.00011309	389.89346578439535	19.9	0.38502	19.885	19.549	19.934	-0.014141	1455	55	0.7413668	0.03340262	0.73984736	450.67563	0	20.30539						411	17	3	NaN	NaN	NaN	0.2961	1	14847	14847		19.164	0.93009	1	91719			11043	1331	6438	6570	8742	8742					0.08338605364883733
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.2375035009	3	385.237504	1152.69068	1.8577	0.00071566	-1.8572	-0.00071545	0.00053174	2.0485E-07	385.2369251355376	19.54	0.21605	19.54	19.516	19.732	0	1449	70	0.74507743	0.042683482	0.74507743	452.9953	0	25.950897						315	10	5	NaN	NaN	NaN	0.022185	1	14901	14901		69.233	22.645	1	160600			11044	1443	6439	6571	8743	8743					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3526170180501	2	577.352617	1152.69068	1.9928	0.0011506	-1.3767	-0.00079482	0.61617	0.00035574	577.3517489566788	19.54	0.14404	19.54	19.516	19.66	0	1155	55	0.92591566	0.033043087	0.92591566	375.2986	0	13.3932495						263	7	4	NaN	NaN	NaN	3.1551E-07	1	14902	14902		134.97	67.819	1	84490			11045	1443	6439	6571	8744	8744					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3526170180501	2	577.352617	1152.69068	1.533	0.00088508	-1.445	-0.00083426	0.088023	5.082E-05	577.3519404822566	19.635	0.16846	19.621	19.573	19.741	-0.014141	1155	64	0.92591566	0.038552344	0.9243962	375.2986	0	15.626312						291	8	4	NaN	NaN	NaN	0.017735	1	14406	14406		92.758	63.159	1	82962			11046	1443	6439	6571	8745	8745					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.2375035009	3	385.237504	1152.69068	1.7388	0.00066986	-1.1478	-0.00044216	0.59104	0.00022769	385.2369589535766	19.635	0.14437	19.621	19.573	19.717	-0.014141	1452	55	0.74322224	0.03339541	0.7417028	451.86737	0	20.303864						312	7	4	NaN	NaN	NaN	0.032021	1	14407	14407		56.466	29.419	1	136750			11047	1443	6439	6571	8746	8746					0.12044338959276502
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.6237895734	1	1088.62379	1087.61651	1.1569	0.0012595	-0.080674	-8.7823E-05	1.0762	0.0011716	1088.6236812002303	35.048	0.12067	35.048	35.023	35.144	0	63	64	1.5811787	0.037085176	1.5811787	320.6775	0	7.52124						183	6	3	NaN	NaN	NaN	0.014943	1	12294	12294		78.398	50.609	1	19854			11048	7958	6440	6572	8747	8747					0.07620951077092286
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.6237895734	1	1088.62379	1087.61651	0.84131	0.00091587	-0.10191	-0.00011095	0.7394	0.00080492	1088.62305702337	35.07	0.12063	35.07	35.022	35.143	-4.5776E-05	60	61	1.582944	0.035313725	1.5814246	321.03552	0	7.1619263						183	6	3	NaN	NaN	NaN	0.0023856	1	11987	11987		109.86	50.412	1	19459			11049	7958	6440	6572	8748	8748					0.07620951077092286
IYILGGYSW	9	Unmodified	_IYILGGYSW_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36;nc|ENSG00000135686|Q8N4N3-2|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5509589813	1	1071.55096	1070.54368	1.5454	0.001656	0.085351	9.1458E-05	1.6308	0.0017474	1071.5513670140074	32.539	0.19305	32.539	32.49	32.683	0	66	67	1.579413	0.038853288	1.579413	320.38342	0	7.8813477						278	9	3	NaN	NaN	NaN	0.0088919	1	11583	11583		94.648	58.611	1	34113			11050	2955	6441	6573	8749	8749					0.011232420743453986
IYILGGYSW	9	Unmodified	_IYILGGYSW_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36;nc|ENSG00000135686|Q8N4N3-2|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5509589813	1	1071.55096	1070.54368	0.88264	0.00094579	-3.4082	-0.0036521	-2.5256	-0.0027063	1071.5514977811026	32.537	0.16896	32.534	32.486	32.655	-0.0031052	63	100	1.5811787	0.058307767	1.5796592	320.74158	0	11.827728						320	8	3	NaN	NaN	NaN	0.0055068	1	11288	11288		101.55	56.916	1	33105			11051	2955	6441	6573	8750	8750					0.011232420743453986
IYINASRWKN	10	Unmodified	_IYINASRWKN_					0	0	0		ENST00000504986.5_1_4:41956263-41956386:+|nuORF	ENST00000504986.5_1_4:41956263-41956386:+|nuORF	ENST00000504986.5_1_4:41956263-41956386:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.23141155886674	3	422.231412	1263.67241	1.4208	0.00059991	-7.3265	-0.0030935	-5.9057	-0.0024936	422.2293898643586	24.936	0.072418	24.936	24.912	24.985	0	1482	49	0.72465914	0.02971381	0.72465914	440.12436	0	18.046783						89	4	2	NaN	NaN	NaN	0.16973	1	18084	18084		30.925	0	1	9923.3			11052	7324	6442	6574	8751	8751					0.051115970372848096
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1164.5611893166	1	1164.56119	1163.55391	1.6862	0.0019636	-0.17132	-0.00019951	1.5148	0.0017641	1164.5608167129108	35.192	0.072372	35.192	35.168	35.241	0	57	73	1.5847093	0.0423764	1.5847093	321.13052	0	8.58728						146	4	2	NaN	NaN	NaN	0.062072	1	15266	15266		41.785	5.198	1	19172			11053	2151	6443	6575	8752	8752					-0.021321949910998228
IYIPSYFDF	9	Unmodified	_IYIPSYFDF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1164.5611893166	1	1164.56119	1163.55391	1.6767	0.0019526	-0.2777	-0.00032339	1.399	0.0016292	1164.5602891147093	35.191	0.072441	35.191	35.167	35.239	-4.5776E-05	57	79	1.5847093	0.04591751	1.5831898	321.13052	0	9.304871						187	4	3	NaN	NaN	NaN	0.12945	1	14741	14741		31.561	16.386	1	15915			11054	2151	6443	6575	8753	8753					-0.021321949910998228
IYIPTAILW	9	Unmodified	_IYIPTAILW_					0	0	0		nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3207855734	2	545.320786	1088.62702	1.2396	0.00067599	-2.1163	-0.0011541	-0.87673	-0.0004781	545.3193916298527	36.83	0.096218	36.832	36.807	36.904	0.0016747	1260	37	0.8615505	0.022109807	0.8600311	349.45255	0	8.967926						126	5	3	NaN	NaN	NaN	0.049695	1	12039	12039		47.04	0	1	14011			11055	626	6444	6576	8754	8754					0.08624978522175297
IYIPTAILW	9	Unmodified	_IYIPTAILW_					0	0	0		nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.6342946802	1	1089.63429	1088.62702	0.96863	0.0010555	0.89543	0.00097569	1.8641	0.0020311	1089.6343231447568	36.854	0.096218	36.856	36.808	36.904	0.0022507	60	64	1.582944	0.037077427	1.5814246	321.03177	0	7.5195312						184	5	3	NaN	NaN	NaN	0.0031782	1	12040	12040		107.47	31.206	1	18972			11056	626	6444	6576	8755	8755					0.08624978522175297
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8369967436	2	607.836997	1213.65944	1.2836	0.00078019	-1.5021	-0.00091301	-0.21852	-0.00013282	607.8360803969773	24.864	0.19307	24.864	24.816	25.009	0	1149	46	0.92958635	0.027528465	0.92958635	376.5626	0	11.151428						244	9	4	NaN	NaN	NaN	0.044307	1	16824	16824		53.652	11.813	1	64810			11057	1259	6445	6577	8756	8756					0.061157211345062024
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.8369967436	2	607.836997	1213.65944	0.99194	0.00060293	-0.71994	-0.00043761	0.272	0.00016533	607.8364402075318	24.864	0.1689	24.851	24.827	24.996	-0.012392	1152	46	0.92775106	0.027528465	0.9262317	375.81915	0	11.151398						266	8	4	NaN	NaN	NaN	0.00031519	1	16156	16156		96.341	12.813	1	66081			11058	1259	6445	6577	8757	8757					0.061157211345062024
IYITGSSII	9	Unmodified	_IYITGSSII_					0	0	0		ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5506246303001	1	966.550625	965.543348	1.7602	0.0017013	0.036519	3.5298E-05	1.7967	0.0017366	966.5505451714347	27.857	0.12065	27.857	27.808	27.929	0	195	58	1.5033154	0.033699393	1.5033154	305.36874	0	6.8453674						193	6	3	NaN	NaN	NaN	0.0081087	1	7510	7510		96.245	11.367	1	30763			11059	2141	6446	6578	8758	8758					0.059198223544854045
IYITGSSII	9	Unmodified	_IYITGSSII_					0	0	0		ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5506246303001	1	966.550625	965.543348	0.97319	0.00094063	-0.076021	-7.3478E-05	0.89716	0.00086715	966.5501690841756	27.856	0.12071	27.846	27.822	27.943	-0.009552	192	61	1.5050892	0.035474896	1.5035697	305.72903	0	7.206024						207	6	4	NaN	NaN	NaN	0.011118	1	7359	7359		89.521	11.123	1	32055			11060	2141	6446	6578	8759	8759					0.059198223544854045
IYIVGGYNW	9	Unmodified	_IYIVGGYNW_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5462079544	1	1084.54621	1083.53893	1.758	0.0019067	0.040986	4.4452E-05	1.799	0.0019511	1084.547545959637	29.763	0.12065	29.763	29.715	29.836	0	90	88	1.5652816	0.051261783	1.5652816	317.46838	0	10.396851						326	6	4	NaN	NaN	NaN	0.00080915	1	12122	12122		114.61	75.999	1	47517			11061	4548	6447	6579	8760	8760					0.0005035793155911961
IYIVGGYNW	9	Unmodified	_IYIVGGYNW_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.5462079544	1	1084.54621	1083.53893	1.1635	0.0012619	-0.18627	-0.00020202	0.97725	0.0010599	1084.5470831805383	29.762	0.14478	29.755	29.707	29.852	-0.0070667	87	85	1.5670487	0.049491525	1.5655292	317.82678	0	10.037811						325	7	3	NaN	NaN	NaN	0.014943	1	11813	11813		78.398	44.7	1	45185			11062	4548	6447	6579	8761	8761					0.0005035793155911961
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.30058144755	2	599.300581	1196.58661	0.70775	0.00042415	-2.4948	-0.0014951	-1.787	-0.001071	599.2992079349156	34.951	0.072273	34.951	34.927	34.999	0	1143	76	0.9332562	0.045900643	0.9332562	378.10983	0	18.59671						78	4	2	NaN	NaN	NaN	0.39244	1	16354	16354		14.042	4.2956	1	6558.2			11063	3179	6448	6580	8762	8762					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.30058144755	2	599.300581	1196.58661	0.81148	0.00048632	-1.8687	-0.0011199	-1.0572	-0.00063356	599.2996947313321	35.723	0.26526	35.723	35.53	35.795	0	1152	58	0.92775106	0.034880698	0.92775106	375.87943	0	14.131958						239	12	3	NaN	NaN	NaN	0.24994	1	16355	16355		22.126	3.008	1	33966			11064	3179	6448	6580	8763	8763					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.30058144755	2	599.300581	1196.58661	1.8993	0.0011382	-1.7336	-0.0010389	0.16567	9.9289E-05	599.2996047351751	34.589	0.33778	34.589	34.493	34.831	0	1149	106	0.92958635	0.064267874	0.92958635	376.623	0	26.038239						790	15	5	NaN	NaN	NaN	0.0062755	1	16356	16356		99.986	54.821	1	637880			11065	3179	6448	6580	8764	8764					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1197.5938864285	1	1197.59389	1196.58661	2.6473	0.0031703	-1.4569	-0.0017448	1.1903	0.0014256	1197.5896453715707	34.614	0.096489	34.614	34.565	34.662	0	60	61	1.582944	0.035313725	1.582944	320.66888	0	7.153778						128	5	3	NaN	NaN	NaN	0.0092442	1	16357	16357		93.929	51.611	1	8801.4			11066	3179	6448	6580	8765	8765					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.30058144755	2	599.300581	1196.58661	0.31542	0.00018903	-2.5906	-0.0015525	-2.2751	-0.0013635	599.7997902196954	35.649	0.19297	35.65	35.481	35.674	0.00052643	1146	49	0.93142134	0.029365301	0.9299019	377.36646	0	11.8974						213	9	3	NaN	NaN	NaN	0.20577	1	15713	15713		24.961	8.5444	1	19600			11067	3179	6448	6580	8766	8766					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.30058144755	2	599.300581	1196.58661	1.5203	0.00091111	-1.1797	-0.00070701	0.34056	0.00020409	599.2998628208688	34.588	0.24107	34.587	34.539	34.78	-0.0006485	1146	106	0.93142134	0.06424707	0.9299019	377.36646	0	26.029785						792	11	5	NaN	NaN	NaN	0.016254	1	15714	15714		76.739	32.964	1	628530			11068	3179	6448	6580	8767	8767					-0.003819878682406852
IYIWDLNNF	9	Unmodified						0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1197.59389	1196.58661	2.0263	0.0024267	-0.54546	-0.00065324	1.4808	0.0017734	1197.5929768760798	34.612	0.096439	34.612	34.587	34.684	-0.00064468	57	46	1.5847093	0.026481032	1.5831898	321.0265		5.3644714	-0.00097822	0.00071004	0.00012289	NaN	93.929	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5700.9			11069	3179	6448	6580							-0.003819878682406852
IYIWDLNNF	9	Unmodified						0	0	0		nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	nc|ENSG00000138674|O94979-5|SEC31A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.300581	1196.58661	1.0911	0.00065393	-2.0933	-0.0012545	-1.0021	-0.00060056	599.8009691548747	34.95	0.096462	34.95	34.901	34.998	-4.5776E-05	1140	40	0.93509084	0.023852885	0.9335714	378.85315		9.664032	-0.00079572	0.00029959	0.0001576	NaN	14.042	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6093.1			11070	3179	6448	6580							-0.003819878682406852
IYIYRATNCA	10	Unmodified	_IYIYRATNCA_					0	0	0			REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2975158298501	2	594.297516	1186.58048	0.80122	0.00047616	8.0926	0.0048094	8.8938	0.0052856	594.3030378477346	31.983	0.14482	31.983	31.959	32.104	0	1164	76	0.9204082	0.04592049	0.9204082	372.94025	0	18.606537						157	7	3	NaN	NaN	NaN	0.72631	1	16057	16057		6.2502	1.3405	1	11680	+		11071	10032	6449	6581	8768	8768					-0.005348293713950625
IYIYRATNCA	10	Unmodified						0	0	0			REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	594.297516	1186.58048	0.80122	0.00047616	8.0926	0.0048094	8.8938	0.0052856	594.3030378477346	31.983	0.14482	31.983	31.959	32.104	0	1164	76	0.9204082	0.04592049	0.9204082	372.94025		18.606537	0.0024234	-0.00051554	0.0016778	NaN	6.2502	157	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11680	+		11072	10032	6449	6581							-0.005348293713950625
IYIYRATNCA	10	Unmodified						0	0	0			REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.297516	1186.58048	0.4423	0.00026285	9.1005	0.0054084	9.5428	0.0056713	594.3048586251452	31.982	0.096529	31.979	31.954	32.051	-0.0037594	1167	67	0.91857195	0.040403485	0.9170525	372.19623		16.371094	-0.0024234	0.00068246	-0.0016778	NaN	6.2502	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9109	+		11073	10032	6449	6581							-0.005348293713950625
IYKAPSENW	9	Unmodified	_IYKAPSENW_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.27710635125	2	554.277106	1106.53966	1.8526	0.0010269	0.088864	4.9255E-05	1.9415	0.0010761	554.2768492125697	18.197	0.19183	18.197	18.149	18.34	0	1266	61	0.85786515	0.036845744	0.85786515	347.8873	0	14.941925						234	9	3	NaN	NaN	NaN	0.026443	1	13130	13130		63.765	27.178	1	35414			11074	2674	6450	6582	8769	8769					-0.009348474193984657
IYKAPSENW	9	Unmodified						0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.277106	1106.53966	2.0004	0.0011088	-1.7827	-0.00098809	0.21771	0.00012067	554.2757236192255	18.218	0.16792	18.204	18.108	18.276	-0.01395	1269	67	0.8560222	0.040530264	0.85450274	347.13992		16.436096	0.0035545	-0.00097015	-0.0016812	NaN	63.765	155	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24477			11075	2674	6450	6582							-0.009348474193984657
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2793146892001	2	537.279315	1072.54408	0.99724	0.0005358	-1.2451	-0.00066899	-0.24789	-0.00013319	537.278010774283	20.501	0.2167	20.487	20.439	20.656	-0.014143	1272	49	0.854179	0.02948612	0.8526596	346.5275	0	11.962067						155	10	2	NaN	NaN	NaN	0.14787	1	11364	11364		28.896	3.9945	1	23316			11076	3514	6451	6583	8770	8770					0.010706170035291507
IYKDSSTFL	9	Unmodified						0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.279315	1072.54408	1.5435	0.00082927	-2.4074	-0.0012935	-0.86398	-0.0004642	537.2782522555358	20.477	0.12023	20.477	20.453	20.573	0	1269	58	0.8560222	0.03502047	0.8560222	347.27527		14.207275	-0.0050438	-0.00063549	0.0016813	NaN	28.896	162	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22298			11077	3514	6451	6583							0.010706170035291507
IYKDYQYYF	9	Unmodified	_IYKDYQYYF_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.8056966152	2	651.805697	1301.59684	1.7603	0.0011474	1.3741	0.00089565	3.1344	0.002043	651.8071223135507	23.369	0.12056	23.369	23.345	23.465	0	1125	55	0.9442611	0.033007503	0.9442611	382.2164	0	13.360687						150	6	3	NaN	NaN	NaN	0.032826	1	18805	18805		55.413	37.18	1	23868			11078	6142	6452	6584	8771	8771					-0.0418942493367922
IYKDYQYYF	9	Unmodified	_IYKDYQYYF_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8056966152	2	651.805697	1301.59684	1.4457	0.00094234	0.76808	0.00050064	2.2138	0.001443	651.8059685042675	23.392	0.12066	23.379	23.331	23.451	-0.013296	1125	58	0.9442611	0.034850597	0.94274163	382.2164	0	14.106781						176	6	4	NaN	NaN	NaN	0.10363	1	17973	17973		35.296	19.071	1	25093			11079	6142	6452	6584	8772	8772					-0.0418942493367922
IYKDYQYYF	9	Unmodified						0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	651.805697	1301.59684	1.616	0.0010533	-0.46169	-0.00030093	1.1543	0.00075239	652.3063536742972	23.513	0.072306	23.5	23.5	23.572	-0.013294	1119	61	0.9479278	0.036651254	0.94640833	383.7006		14.835632	0.065541	-0.0015763	0.0010736	NaN	55.413	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8543.6			11080	6142	6452	6584							-0.0418942493367922
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.81405296355	2	638.814053	1275.61355	1.9376	0.0012378	-2.4295	-0.001552	-0.49194	-0.00031426	638.8121888619279	16.494	0.11984	16.494	16.47	16.59	0	1116	31	0.94976085	0.01832962	0.94976085	384.52484	0	7.42099						79	6	3	NaN	NaN	NaN	0.44834	1	18334	18334		11.739	2.7769	1	5854.4			11081	4155	6453	6585	8773	8773					-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.2117941312333	3	426.211794	1275.61355	1.4353	0.00061173	2.0895	0.00089057	3.5248	0.0015023	426.21355736376063	16.563	0.2158	16.55	16.502	16.717	-0.012993	1461	61	0.7376554	0.03712207	0.73613596	447.97238	0	22.543976						198	10	3	NaN	NaN	NaN	0.44834	1	17521	17521		10.861	8.4003	1	17450			11082	4155	6453	6585	8774	8774					-0.013229240477357962
IYKEEREYF	9	Unmodified						0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	426.211794	1275.61355	1.532	0.00065295	3.1422	0.0013392	4.6742	0.0019922	426.2138445343803	16.494	0.11984	16.494	16.47	16.59	0	1458	52	0.7395112	0.031552076	0.7395112	449.09937		19.161316	-0.027906	0.00074292	0.0016876	NaN	10.861	130	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14308			11083	4155	6453	6585							-0.013229240477357962
IYKEVIAVQ	9	Unmodified	_IYKEVIAVQ_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.81332468205	2	531.813325	1061.6121	1.6406	0.00087251	-3.601	-0.0019151	-1.9604	-0.0010426	531.8112753821564	27.229	0.16891	27.229	27.181	27.35	0	1251	70	0.8670771	0.04236573	0.8670771	351.806	0	17.189362						206	8	3	NaN	NaN	NaN	0.060816	1	11198	11198		42.318	1.3607	1	56759			11084	4012	6454	6586	8775	8775					0.08375486654176711
IYKFLTPYL	9	Unmodified	_IYKFLTPYL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3338929486501	2	579.333893	1156.65323	1.9187	0.0011116	-2.5918	-0.0015015	-0.67312	-0.00038996	579.3328471140869	28.484	0.16897	28.484	28.46	28.629	0	1164	79	0.9204082	0.04775989	0.9204082	373.05118	0	19.357574						390	8	4	NaN	NaN	NaN	0.026469	1	15047	15047		63.731	26.428	1	64262			11085	5649	6455	6587	8776	8776					0.08117247693667196
IYKFLTPYL	9	Unmodified	_IYKFLTPYL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3338929486501	2	579.333893	1156.65323	1.2448	0.00072117	-3.0122	-0.001745	-1.7673	-0.0010239	579.3334038834448	28.507	0.19301	28.499	28.451	28.644	-0.0083485	1161	70	0.9222442	0.04224229	0.92072475	373.79535	0	17.121246						432	9	4	NaN	NaN	NaN	0.059222	1	14548	14548		42.995	7.6983	1	67429			11086	5649	6455	6587	8777	8777					0.08117247693667196
IYKGIPLQL	9	Unmodified	_IYKGIPLQL_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.8262350920501	2	522.826235	1043.63792	1.8176	0.00095029	-3.7367	-0.0019537	-1.9191	-0.0010034	522.8242807066932	25.564	0.12058	25.564	25.515	25.636	0	1257	49	0.86339295	0.029479682	0.86339295	350.38843	0	11.963684						159	6	4	NaN	NaN	NaN	0.18779	1	10376	10376		26.115	9.2566	1	18056			11087	3636	6456	6588	8778	8778					0.11784380896460789
IYKGIPLQL	9	Unmodified	_IYKGIPLQL_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.8262350920501	2	522.826235	1043.63792	1.8978	0.00099222	-1.8544	-0.00096952	0.043425	2.2704E-05	522.825558024092	25.563	0.12062	25.552	25.528	25.648	-0.011602	1254	55	0.8652351	0.033168256	0.86371565	351.13605	0	13.460602						145	6	4	NaN	NaN	NaN	0.33629	1	10170	10170		16.584	5.9792	1	17130			11088	3636	6456	6588	8779	8779					0.11784380896460789
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.8973698038666	3	400.89737	1199.67028	1.5205	0.00060957	-2.1876	-0.00087699	-0.66706	-0.00026742	400.8962522103161	25.25	0.21717	25.25	25.202	25.419	0	1416	52	0.76547134	0.031504214	0.76547134	465.17932	0	19.145203						276	10	5	NaN	NaN	NaN	0.026469	1	16476	16476		49.394	26.308	1	69747			11089	1711	6457	6589	8780	8780					0.07843168299450554
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8424164725	2	600.842416	1199.67028	1.5359	0.00092284	-1.6955	-0.0010188	-0.15964	-9.5917E-05	600.841309697837	25.25	0.096523	25.25	25.226	25.322	0	1149	52	0.92958635	0.031192243	0.92958635	376.61194	0	12.637207						161	5	4	NaN	NaN	NaN	0.059222	1	16477	16477		42.995	22.481	1	34219			11090	1711	6457	6589	8781	8781					0.07843168299450554
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.8973698038666	3	400.89737	1199.67028	1.7407	0.00069785	-2.9952	-0.0012008	-1.2545	-0.00050294	400.8960328434736	25.298	0.28949	25.286	25.238	25.527	-0.012011	1416	55	0.76547134	0.033355594	0.7639519	465.17932	0	20.270294						328	13	4	NaN	NaN	NaN	0.25548	1	15824	15824		24.393	11.292	1	73220			11091	1711	6457	6589	8782	8782					0.07843168299450554
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8424164725	2	600.842416	1199.67028	1.3759	0.0008267	-1.0352	-0.000622	0.3407	0.00020471	600.8418789336666	25.322	0.21709	25.31	25.238	25.455	-0.012011	1140	70	0.93509084	0.04218304	0.9335714	378.84204	0	17.089996						223	10	3	NaN	NaN	NaN	0.16939	1	15825	15825		27.296	9.4972	1	33553			11092	1711	6457	6589	8783	8783					0.07843168299450554
IYKLVSILI	9	Unmodified	_IYKLVSILI_					0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3520857018001	2	531.352086	1060.68962	1.2849	0.00068274	-1.1428	-0.00060723	0.14211	7.551E-05	531.351474534091	31.983	0.19305	31.983	31.959	32.152	0	1215	40	0.8891654	0.023912191	0.8891654	360.77206	0	9.702209						170	9	4	NaN	NaN	NaN	0.055351	1	11151	11151		44.638	2.3209	1	21613	+		11093	10701	6458	6590	8784	8784					0.16170124590371415
IYKLVSILI	9	Unmodified	_IYKLVSILI_					0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3520857018001	2	531.352086	1060.68962	0.30475	0.00016193	-2.676	-0.0014219	-2.3713	-0.00126	531.350769573273	32.151	0.26546	32.148	32.027	32.292	-0.0037613	1212	46	0.8910048	0.02758503	0.88948536	361.5184	0	11.192413						167	12	2	NaN	NaN	NaN	0.13602	1	10907	10907		30.61	2.8213	1	22257	+		11094	10701	6458	6590	8785	8785					0.16170124590371415
IYKLVSILI	9	Unmodified						0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.352086	1060.68962	1.2849	0.00068274	-1.1428	-0.00060723	0.14211	7.551E-05	531.351474534091	31.983	0.19305	31.983	31.959	32.152	0	1215	40	0.8891654	0.023912191	0.8891654	360.77206		9.702209	-0.082036	0.00091008	-0.00015998	NaN	44.638	170	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21613	+		11095	10701	6458	6590							0.16170124590371415
IYKLVSILI	9	Unmodified						0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.352086	1060.68962	0.30475	0.00016193	-2.676	-0.0014219	-2.3713	-0.00126	531.350769573273	32.151	0.26546	32.148	32.027	32.292	-0.0037613	1212	46	0.8910048	0.02758503	0.88948536	361.5184		11.192413	0.082036	-0.00071927	0.00015998	NaN	44.638	167	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22257	+		11096	10701	6458	6590							0.16170124590371415
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8420821215001	2	621.842082	1241.66961	1.2589	0.00078285	-2.4874	-0.0015468	-1.2284	-0.0007639	621.8408970720188	29.353	0.1931	29.353	29.305	29.498	0	1116	70	0.94976085	0.04217851	0.94976085	384.6374	0	17.081604						283	9	3	NaN	NaN	NaN	0.44412	1	17577	17577		21.771	2.6075	1	56057			11097	3139	6459	6591	8786	8786					0.05844328859757297
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.8420821215001	2	621.842082	1241.66961	0.68095	0.00042344	-1.764	-0.001097	-1.0831	-0.00067351	621.8417409930796	29.376	0.26542	29.368	29.272	29.537	-0.0077229	1116	67	0.94976085	0.04033816	0.9482414	384.6374	0	16.336273						279	12	3	NaN	NaN	NaN	0.44412	1	16832	16832		21.771	1.3224	1	54805			11098	3139	6459	6591	8787	8787					0.05844328859757297
IYLAPGDYHCF	11	Unmodified	_IYLAPGDYHCF_					0	0	0		ENST00000460723.5_1_22:32015600-32017569:-|nuORF;ENST00000473770.5_1_22:32015600-32017204:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD;PISD|p.T319Lfs*36|1|0.12|ENSG00000241878|chr22:31620600-31620603|CTGT/-|frameshift_variant;PISD|p.V321Wfs*35|1|0.14|ENSG00000241878|chr22:31620598-31620598|A/-|frameshift_variant	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.7973486543501	2	649.797349	1297.58014	3.3686	0.0021889	5.6541	0.003674	9.0227	0.0058629	650.3030132865284	25.974	0.048254	25.962	25.914	25.962	-0.0116	1107	19	0.9552588	0.010993004	0.9537394	386.6806	0	4.4498596						20	3	2	NaN	NaN	NaN	0.65577	1	17892	17892		10.36	0.74852	1	1878.3			11099	7076	6460	6592	8788	8788					-0.056742490912483845
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229001	1	1020.59757	1019.5903	2.5026	0.0025542	-1.483	-0.0015135	1.0197	0.0010407	1020.5962288718613	36.495	0.072407	36.495	36.471	36.543	0	93	37	1.5635144	0.021208405	1.5635144	317.36002	0	4.3048706						48	4	2	NaN	NaN	NaN	0.55027	1	9358	9358		7.5404	0.67717	1	3244.4			11100	3032	6461	6593	8789	8789					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229001	1	1020.59757	1019.5903	2.1016	0.0021449	-0.33114	-0.00033796	1.7705	0.0018069	1020.5966065187581	34.203	0.072365	34.203	34.179	34.252	0	699	97	1.2026466	0.0577358	1.2026466	244.11156	0	11.719131						138	4	3	NaN	NaN	NaN	0.0072287	1	9360	9360		98.041	36.064	1	17595			11101	3032	6461	6593	8790	8790					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229001	1	1020.59757	1019.5903	2.1343	0.0021782	-0.047482	-4.846E-05	2.0868	0.0021298	1020.5980295329854	35.844	0.072342	35.844	35.82	35.892	0	96	52	1.5617468	0.03004682	1.5617468	317.00125	0	6.0988464						85	4	2	NaN	NaN	NaN	0.062072	1	9361	9361		41.785	16.823	1	6463.9			11102	3032	6461	6593	8791	8791					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5975748229001	1	1020.59757	1019.5903	3.0564	0.0031194	0.4565	0.0004659	3.5129	0.0035853	1020.5975693556786	34.203	0.57892	34.203	34.131	34.71	0	84	553	1.5688156	0.32769704	1.5688156	318.43604	0	66.5155						2817	25	6	NaN	NaN	NaN	0.014943	1	9363	9363		78.398	14.667	1	3241500			11103	3032	6461	6593	8792	8792					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5975748229001	1	1020.59757	1019.5903	1.4294	0.0014589	0.2024	0.00020657	1.6318	0.0016654	1020.597717619458	34.202	0.048275	34.201	34.177	34.225	-0.0012474	696	172	1.2044523	0.102737665	1.2029328	244.47807	0	20.85353						176	3	3	NaN	NaN	NaN	0.025843	1	9172	9172		64.55	25.632	1	19153			11104	3032	6461	6593	8793	8793					0.08128681905623125
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5975748229001	1	1020.59757	1019.5903	2.6702	0.0027252	0.89373	0.00091214	3.564	0.0036374	1020.5982191478037	34.202	0.55463	34.201	34.129	34.683	-0.0012474	81	349	1.5705823	0.20584393	1.5690628	318.79465	0	41.78192						2722	24	6	NaN	NaN	NaN	0.014943	1	9173	9173		78.398	14.667	1	3148800			11105	3032	6461	6593	8794	8794					0.08128681905623125
IYLDGIITI	9	Unmodified						0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1020.59757	1019.5903	2.1071	0.0021505	0.18885	0.00019274	2.296	0.0023433	1020.5982135413145	36.372	0.096348	36.374	36.35	36.446	0.0016747	90	40	1.5652816	0.02297461	1.5637622	317.71872		4.6633606	-0.060374	0.00061671	0.00012392	NaN	7.5404	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6795.7			11106	3032	6461	6593							0.08128681905623125
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7951319289001	2	561.795132	1121.57571	1.0022	0.00056302	-1.2127	-0.00068131	-0.21056	-0.00011829	561.7944251254805	31.042	0.096529	31.042	31.018	31.115	0	1245	82	0.87076044	0.049679935	0.87076044	353.05847	0	20.143188						187	5	4	NaN	NaN	NaN	0.089764	1	13745	13745		37.302	13.968	1	22015			11107	430	6462	6594	8795	8795					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7951319289001	2	561.795132	1121.57571	1.1605	0.00065194	-2.1644	-0.0012159	-1.0039	-0.00056398	561.7940095744235	31.041	0.096565	31.036	31.012	31.109	-0.0050716	1242	73	0.87260187	0.0441671	0.8710824	353.80508	0	17.907959						198	5	3	NaN	NaN	NaN	0.12328	1	13342	13342		32.453	10.618	1	24912			11108	430	6462	6594	8796	8796					0.019786097574751693
IYLDTHFRL	9	Unmodified	_IYLDTHFRL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.21699095946667	3	393.216991	1176.62914	1.1105	0.00043668	-1.9342	-0.00076057	-0.82367	-0.00032388	393.21602029349964	24.188	0.19309	24.188	24.164	24.357	0	1416	46	0.76547134	0.027794778	0.76547134	465.2827	0	16.894745						156	9	2	NaN	NaN	NaN	0.089764	1	15715	15715		32.778	25.19	1	31143			11109	2403	6463	6595	8797	8797					0.04789407260000189
IYLDTHFRL	9	Unmodified	_IYLDTHFRL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3218482059001	2	589.321848	1176.62914	1.351	0.00079617	-1.7527	-0.0010329	-0.40175	-0.00023676	589.3207708426933	24.164	0.096558	24.164	24.164	24.261	0	1131	49	0.94059354	0.029349506	0.94059354	381.15625	0	11.89328						97	5	2	NaN	NaN	NaN	0.11656	1	15716	15716		33.425	14.089	1	10272			11110	2403	6463	6595	8798	8798					0.04789407260000189
IYLDTHFRL	9	Unmodified	_IYLDTHFRL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.21699095946667	3	393.216991	1176.62914	1.3028	0.00051227	-4.3545	-0.0017123	-3.0517	-0.0012	393.21535505152207	24.26	0.21725	24.248	24.199	24.417	-0.012749	1416	40	0.76547134	0.02408886	0.7639519	465.28275	0	14.64209						191	10	3	NaN	NaN	NaN	0.055351	1	15143	15143		39.039	9.0037	1	25460			11111	2403	6463	6595	8799	8799					0.04789407260000189
IYLDTHFRL	9	Unmodified	_IYLDTHFRL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3218482059001	2	589.321848	1176.62914	1.326	0.00078142	-4.3428	-0.0025593	-3.0168	-0.0017779	589.318774451224	24.236	0.096558	24.224	24.199	24.296	-0.012747	1128	43	0.9424274	0.025675297	0.94090796	381.89938	0	10.404388						108	5	3	NaN	NaN	NaN	0.37272	1	15144	15144		14.854	3.6837	1	8305.9			11112	2403	6463	6595	8800	8800					0.04789407260000189
IYLDTHFRLL	10	Unmodified	_IYLDTHFRLL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.91167895293336	3	430.911679	1289.71321	1.0878	0.00046875	-1.7161	-0.00073949	-0.6283	-0.00027074	430.91087117753915	26.819	0.096537	26.819	26.795	26.891	0	1353	37	0.8043377	0.022186518	0.8043377	488.4109	0	13.472107						91	5	3	NaN	NaN	NaN	0.5917	1	18598	18598		12.307	1.9465	1	6527.8			11113	2403	6464	6596	8801	8801					0.07993938356912622
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8524498425501	2	560.85245	1119.69035	1.6788	0.00094154	-2.7166	-0.0015236	-1.0378	-0.00058204	560.8505821352219	20.694	0.21691	20.694	20.646	20.862	0	1167	76	0.91857195	0.045910537	0.91857195	372.45172	0	18.615295						383	10	5	NaN	NaN	NaN	0.00012629	1	13681	13681		121.31	46.221	1	171670			11114	7990	6465	6597	8802	8802					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.23739205056665	3	374.237392	1119.69035	1.2007	0.00044936	-1.5802	-0.00059136	-0.37946	-0.00014201	374.23691322574	20.791	0.14444	20.776	20.728	20.873	-0.014086	1479	58	0.72651637	0.035283267	0.7249969	441.86407	0	21.459106						233	7	3	NaN	NaN	NaN	0.097143	1	13278	13278		26.96	10.734	1	58120			11115	7990	6465	6597	8803	8803					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8524498425501	2	560.85245	1119.69035	1.2875	0.00072211	-1.468	-0.00082333	-0.18047	-0.00010122	560.8517740694084	20.791	0.21678	20.776	20.704	20.921	-0.014086	1164	67	0.9204082	0.040394723	0.91888875	373.19626	0	16.378784						369	10	4	NaN	NaN	NaN	0.0056438	1	13279	13279		101.27	37.544	1	177130			11116	7990	6465	6597	8804	8804					0.13528919239411152
IYLEYEKQ	8	Unmodified	_IYLEYEKQ_					0	0	0			REV__ENST00000537556.1_1_12:64238596-64474299:+|nuORF	REV__ENST00000537556.1_1_12:64238596-64474299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2793146892	2	543.279315	1084.54408	1.3657	0.00074197	-3.1043	-0.0016865	-1.7386	-0.00094453	543.2772707406809	29.762	0.072365	29.755	29.755	29.828	-0.0070667	1290	49	0.84311575	0.029505253	0.8415963	341.9913	0	11.96817						61	4	2	NaN	NaN	NaN	0.76633	1	11849	11849		13.737	3.6855	1	6482.8	+		11117	12682	6466	6598	8805	8805					0.005186170035130999
IYLFCARHKA	10	Unmodified	_IYLFCARHKA_					0	0	0		ENST00000545721.1_1_11:71719136-71719322:-|nuORF	ENST00000545721.1_1_11:71719136-71719322:-|nuORF	ENST00000545721.1_1_11:71719136-71719322:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.890220821	3	407.890221	1220.64883	1.6736	0.00068263	0.84227	0.00034355	2.5158	0.0010262	407.89041635292966	18.698	0.14396	18.684	18.66	18.804	-0.014059	1473	37	0.7302302	0.022280514	0.7287108	443.67657	0	13.5372925						83	7	2	NaN	NaN	NaN	0.71736	1	16319	16319		3.261	0	1	10310			11118	7521	6467	6599	8806	8806					0.04733459999101797
IYLFNWNGF	9	Unmodified	_IYLFNWNGF_					0	0	0		nc|ENSG00000120314|Q9H6Y2-2|WDR55;ENST00000506393.5_1_5:140048657-140049236:+|nuORF;WDR55|p.D380*|1|0.17|ENSG00000120314|chr5:140669636-140669637|TG/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	nc|ENSG00000120314|Q9H6Y2-2|WDR55	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.29001676125	2	587.290017	1172.56548	1.462	0.0008586	-4.6197	-0.0027131	-3.1577	-0.0018545	587.7891480670005	36.133	0.048267	36.133	36.109	36.157	0	1182	64	0.9093879	0.038585663	0.9093879	368.5256	0	15.636688						104	3	3	NaN	NaN	NaN	0.51184	1	15567	15567		9.1232	0.16122	1	8157			11119	2253	6468	6600	8807	8807					-0.013899531771357942
IYLGYTFCGWI	11	Unmodified	_IYLGYTFCGWI_					0	0	0		ENST00000531325.5_1_1:85403252-85462600:-|nuORF;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.32574195305	2	668.325742	1334.63693	0.77517	0.00051807	-5.6539	-0.0037787	-4.8787	-0.0032606	668.3220803139321	33.43	0.16892	33.428	33.404	33.573	-0.0018501	1119	82	0.9479278	0.04947126	0.94640833	383.60086	0	20.019684						176	8	2	NaN	NaN	NaN	0.69801	1	18461	18461		7.5876	2.1377	1	15627			11120	3820	6469	6601	8808	8808					-0.01700201534754342
IYLGYTFCGWI	11	Unmodified						0	0	0		ENST00000531325.5_1_1:85403252-85462600:-|nuORF;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	668.325742	1334.63693	0.82472	0.00055118	-10.241	-0.0068446	-9.4167	-0.0062934	668.320557050763	33.504	0.072365	33.504	33.504	33.576	0	1128	61	0.9424274	0.03665918	0.9424274	381.37503		14.834961	0.037808	-0.003116	-0.0019905	NaN	7.5876	109	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7082.7			11121	3820	6469	6601							-0.01700201534754342
IYLILMGTTL	10	Unmodified	_IYLILMGTTL_					0	0	0			REV__ENST00000415215.1_1_X:73167175-73167235:+|nuORF	REV__ENST00000415215.1_1_X:73167175-73167235:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3330356689	2	569.333036	1136.65152	1.6023	0.00091224	-7.1864	-0.0040915	-5.5842	-0.0031792	569.3279935154615	34.323	0.096333	34.322	34.274	34.37	-0.0012474	1206	34	0.894683	0.020222485	0.89316356	362.69968	0	8.198059						44	5	2	NaN	NaN	NaN	0.772	1	13883	13883		2.4615	0.28518	1	3484.7	+		11122	12088	6470	6602	8809	8809					0.08865870613385596
IYLKSDTFILD	11	Unmodified	_IYLKSDTFILD_					0	0	0			REV__ENST00000428294.5_1_22:38743544-38776397:-|nuORF	REV__ENST00000428294.5_1_22:38743544-38776397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.36083598065	2	664.360836	1326.70712	1.5317	0.0010176	-1.9465	-0.0012932	-0.41479	-0.00027557	664.3600655875947	27.518	0.072407	27.508	27.484	27.557	-0.009552	1113	46	0.9515937	0.02748698	0.95007426	385.1079	0	11.123932						122	4	3	NaN	NaN	NaN	0.63477	1	18349	18349		11.739	0.17755	1	14067	+		11123	9552	6471	6603	8810	8810					0.056833753347063976
IYLLENGLNLF	11	Unmodified	_IYLLENGLNLF_					0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8635458451001	2	654.863546	1307.71254	0.7824	0.00051237	-1.1273	-0.0007382	-0.34485	-0.00022583	654.8629911824006	36.926	0.16816	36.928	36.88	37.048	0.0022469	1080	52	0.9717421	0.031118333	0.97022265	393.3208	0	12.595398						299	8	4	NaN	NaN	NaN	0.012826	1	18066	18066		66.544	7.7741	1	60655			11124	5052	6472	6604	8811	8811					0.07099098917205993
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.8189413762	2	573.818941	1145.62333	2.2388	0.0012847	0.92561	0.00053113	3.1644	0.0018158	573.8195747297606	26.263	0.19307	26.263	26.239	26.432	0	1185	76	0.90755045	0.04592049	0.90755045	367.88153	0	18.614166						170	9	3	NaN	NaN	NaN	0.032417	1	14656	14656		55.947	5.9148	1	91297			11125	3398	6473	6605	8812	8812					0.05634308748312833
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.8189413762	2	573.818941	1145.62333	1.4893	0.0008546	-2.9142	-0.0016722	-1.4249	-0.00081763	573.8173419829376	26.287	0.072361	26.276	26.252	26.324	-0.011137	1188	49	0.90571284	0.029393852	0.9041934	367.13666	0	11.914978						56	4	2	NaN	NaN	NaN	0.020004	1	14172	14172		71.993	30.208	1	55343			11126	3398	6473	6605	8813	8813					0.05634308748312833
IYLNNIIPRF	10	Unmodified	_IYLNNIIPRF_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.86642288505	2	631.866423	1261.71829	1.8263	0.001154	-2.9154	-0.0018422	-1.0891	-0.00068818	631.8642376662556	29.98	0.16891	29.98	29.884	30.053	0	1107	40	0.9552588	0.02382207	0.9552588	386.7964	0	9.6458435						175	8	3	NaN	NaN	NaN	0.040041	1	18039	18039		55.413	25.815	1	20093			11127	6162	6474	6606	8814	8814					0.09790242219492029
IYLNNIIPRF	10	Unmodified	_IYLNNIIPRF_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.86642288505	2	631.866423	1261.71829	1.0363	0.00065478	-2.3939	-0.0015126	-1.3577	-0.00085786	631.8650903423852	29.979	0.14477	29.973	29.901	30.045	-0.0064087	1107	34	0.9552588	0.020157099	0.9537394	386.7964	0	8.161865						145	7	3	NaN	NaN	NaN	0.0040309	1	17259	17259		79.199	51.903	1	16374			11128	6162	6474	6606	8815	8815					0.09790242219492029
IYLNSSLVQF	10	Unmodified	_IYLNSSLVQF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3215138549	2	592.321514	1182.62847	0.95313	0.00056456	-2.8457	-0.0016855	-1.8925	-0.001121	592.3197801817558	30.753	0.14481	30.753	30.728	30.873	0	1167	58	0.91857195	0.034884453	0.91857195	372.21057	0	14.1354065						220	7	3	NaN	NaN	NaN	0.070973	1	15932	15932		49.961	23.846	1	40628			11129	408	6475	6607	8816	8816					0.04446567820264136
IYLNSSLVQF	10	Unmodified						0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.321514	1182.62847	0.75241	0.00044567	-1.4344	-0.00084964	-0.68202	-0.00040398	592.3203789385083	30.752	0.16887	30.746	30.698	30.866	-0.0057545	1164	64	0.9204082	0.038552344	0.91888875	372.95462		15.621643	-0.0034053	0.00068497	0.00015839	NaN	49.961	247	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42413			11130	408	6475	6607							0.04446567820264136
IYLNSSLVQFL	11	Unmodified	_IYLNSSLVQFL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.8635458451	2	648.863546	1295.71254	0.71046	0.00046099	-2.8115	-0.0018242	-2.101	-0.0013633	648.8626266147495	35.265	0.072403	35.265	35.241	35.313	0	1080	43	0.9717421	0.02563101	0.9717421	393.3589	0	10.375366						79	4	2	NaN	NaN	NaN	0.67644	1	18706	18706		16.858	6.4982	1	8335.3			11131	408	6476	6608	8817	8817					0.07651098917176569
IYLNSSLVQFL	11	Unmodified	_IYLNSSLVQFL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8635458451	2	648.863546	1295.71254	1.0242	0.00066455	-3.3315	-0.0021617	-2.3073	-0.0014971	648.8616518505194	35.263	0.096569	35.263	35.239	35.336	-4.5776E-05	1083	46	0.9699114	0.027460277	0.96839195	392.61786	0	11.115875						94	5	2	NaN	NaN	NaN	0.51337	1	17867	17867		30.035	17.033	1	8840.9			11132	408	6476	6608	8818	8818					0.07651098917176569
IYLPSERVFLF	11	Unmodified	_IYLPSERVFLF_					0	0	0		ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3871881169	2	692.387188	1382.75982	1.1035	0.00076405	-6.0452	-0.0041856	-4.9417	-0.0034215	692.383129939548	31.548	0.048279	31.544	31.544	31.592	-0.0044174	1035	46	0.99917877	0.027412951	0.9976593	404.1965	0	11.089355						48	3	2	NaN	NaN	NaN	0.76276	1	18985	18985		3.261	0.37153	1	3782.2			11133	41	6477	6609	8819	8819					0.08375378188156901
IYLPYLHEW	9	Unmodified	_IYLPYLHEW_					0	0	0		ENST00000545247.6_1_11:18505612-18548363:-|nuORF;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENSG00000074319|ENST00000251968|TSG101	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3187742007	2	617.318774	1232.623	1.2778	0.00078883	-5.7909	-0.0035748	-4.513	-0.002786	617.314563338187	29.184	0.26544	29.184	29.087	29.353	0	1146	112	0.93142134	0.067837775	0.93142134	377.24066	0	27.475403						681	12	3	NaN	NaN	NaN	0.12945	1	17343	17343		31.561	0.95093	1	209790			11134	821	6478	6610	8820	8820					0.015988890284461377
IYLPYLHEW	9	Unmodified	_IYLPYLHEW_					0	0	0		ENST00000545247.6_1_11:18505612-18548363:-|nuORF;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENSG00000074319|ENST00000251968|TSG101	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3187742007	2	617.318774	1232.623	0.95546	0.00058982	-6.6124	-0.004082	-5.657	-0.0034922	617.3140998855012	29.207	0.19307	29.2	29.127	29.32	-0.0077209	1122	118	0.9460945	0.07149702	0.9445751	383.18353	0	28.957428						474	9	2	NaN	NaN	NaN	0.078597	1	16616	16616		38.918	16.792	1	190640			11135	821	6478	6610	8821	8821					0.015988890284461377
IYLPYLHEW	9	Unmodified						0	0	0		ENST00000545247.6_1_11:18505612-18548363:-|nuORF;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENSG00000074319|ENST00000251968|TSG101	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.318774	1232.623	0.6239	0.00038514	-3.69	-0.0022779	-3.0661	-0.0018927	617.316884116773	29.352	0.096516	29.344	29.32	29.417	-0.0077209	1128	73	0.9424274	0.04401946	0.94090796	381.6983		17.828613	0.080216	0.0018511	0.0047433	NaN	31.561	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17404			11136	821	6478	6610							0.015988890284461377
IYLPYLQNW	9	Unmodified	_IYLPYLQNW_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.3187742007	2	605.318774	1208.623	0.98157	0.00059416	-1.7605	-0.0010657	-0.77898	-0.00047153	605.3178789852534	34.035	0.2413	34.035	33.986	34.228	0	1155	88	0.92591566	0.0532735	0.92591566	375.09323	0	21.58136						623	11	4	NaN	NaN	NaN	2.5768E-06	1	16700	16700		128.85	79.014	1	129460			11137	3722	6479	6611	8822	8822					0.02702889028455502
IYLPYLQNW	9	Unmodified	_IYLPYLQNW_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.3187742007	2	605.318774	1208.623	0.77461	0.00046889	-0.86544	-0.00052387	-0.090828	-5.498E-05	605.318233304831	34.033	0.26555	34.032	33.984	34.249	-0.0012474	1152	91	0.92775106	0.055101573	0.9262317	375.83676	0	22.32196						621	12	4	NaN	NaN	NaN	0.011118	1	16028	16028		89.521	55.082	1	124760			11138	3722	6479	6611	8823	8823					0.02702889028455502
IYLRDPVQV	9	Unmodified	_IYLRDPVQV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.8163986872501	2	551.816399	1101.61824	1.3951	0.00076982	-3.9561	-0.002183	-2.561	-0.0014132	551.8145104183749	22.886	0.096445	22.872	22.824	22.921	-0.01354	1212	52	0.8910048	0.031273186	0.88948536	361.3462	0	12.682831						158	5	4	NaN	NaN	NaN	0.032409	1	12581	12581		55.958	17.827	1	19002			11139	2905	6480	6612	8824	8824					0.07150004885693306
IYLRDPVQV	9	Unmodified						0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.816399	1101.61824	1.5627	0.00086233	-3.8762	-0.002139	-2.3135	-0.0012766	551.813944451658	22.838	0.14471	22.838	22.79	22.935	0	1212	61	0.8910048	0.036793947	0.8910048	361.3462		14.921753	-0.01698	4.7863E-05	0.00075972	NaN	55.958	141	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17059			11140	2905	6480	6612							0.07150004885693306
IYLRLLVKL	9	Unmodified	_IYLRLLVKL_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.59351016280004	3	377.59351	1129.7587	1.231	0.0004648	-1.3582	-0.00051286	-0.12727	-4.8057E-05	377.59300059456666	27.012	0.09654	27.012	26.988	27.084	0	1446	37	0.7469324	0.022258759	0.7469324	454.2319	0	13.536224						88	5	2	NaN	NaN	NaN	0.25548	1	14087	14087		21.771	8.6699	1	10114			11141	658	6481	6613	8825	8825					0.19901208609940113
IYLRLLVKL	9	Unmodified	_IYLRLLVKL_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8866270109002	2	565.886627	1129.7587	1.5365	0.00086947	-0.52064	-0.00029462	1.0158	0.00057485	565.8863822220345	27.012	0.19307	27.012	26.988	27.181	0	1119	43	0.9479278	0.025661409	0.9479278	384.3129	0	10.403748						148	9	2	NaN	NaN	NaN	0.052553	1	14088	14088		61.271	36.31	1	17335			11142	658	6481	6613	8826	8826					0.19901208609940113
IYLRYTDNSG	10	Unmodified	_IYLRYTDNSG_					0	0	0		tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	tr|U7T2W4|U7T2W4_FUSNUBiopolymertransporterExbDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00483PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2960273859001	2	601.296027	1200.5775	0.80954	0.00048677	1.1619	0.00069864	1.9714	0.0011854	601.2967131513312	33.817	0.28957	33.817	33.673	33.962	0	1161	94	0.9222442	0.05692911	0.9222442	373.63416	0	23.064026						509	13	5	NaN	NaN	NaN	0.20271	1	16490	16490		35.296	0.85769	1	139280			11143	13966	6482	6614	8827	8827					-0.014763812245746522
IYLSKPTHW	9	Unmodified	_IYLSKPTHW_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.8111163441	2	572.811116	1143.60768	2.2572	0.0012929	-1.8642	-0.0010678	0.39301	0.00022512	572.810172284317	18.388	0.096008	18.388	18.364	18.46	0	1182	85	0.9093879	0.051478148	0.9093879	368.63406	0	20.867462						222	5	3	NaN	NaN	NaN	0.054111	1	14592	14592		45.165	15.567	1	21059			11144	8101	6483	6615	8828	8828					0.041620222312758415
IYLSKPTHW	9	Unmodified	_IYLSKPTHW_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.2098363849333	3	382.209836	1143.60768	1.9821	0.00075759	-2.9439	-0.0011252	-0.96178	-0.0003676	382.20871131607095	18.482	0.14396	18.468	18.42	18.564	-0.01395	1431	46	0.75620437	0.027809858	0.7546849	459.80344	0	16.909546						187	7	4	NaN	NaN	NaN	0.074859	1	14111	14111		28.495	17.325	1	24014			11145	8101	6483	6615	8829	8829					0.041620222312758415
IYLSKPTHW	9	Unmodified	_IYLSKPTHW_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8111163441	2	572.811116	1143.60768	1.6472	0.00094353	-1.4704	-0.00084229	0.17675	0.00010125	572.8100460507156	18.482	0.12	18.468	18.42	18.54	-0.01395	1182	73	0.9093879	0.044124186	0.90786844	368.63406	0	17.886383						234	6	3	NaN	NaN	NaN	0.42817	1	14112	14112		12.57	0.52101	1	21620			11146	8101	6483	6615	8830	8830					0.041620222312758415
IYLSLHTGEG	10	Unmodified	_IYLSLHTGEG_					0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2823886944	2	545.282389	1088.55022	1.467	0.00079996	6.8858	0.0037547	8.3529	0.0045547	545.2866309953376	29.763	0.1448	29.763	29.715	29.86	0	1215	31	0.8891654	0.018395007	0.8891654	360.65366	0	7.4611816						105	7	2	NaN	NaN	NaN	0.67523	1	12327	12327		9.746	0.78402	1	10914	+		11147	8622	6484	6616	8831	8831					0.009491352350323723
IYLSLHTGEG	10	Unmodified						0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.282389	1088.55022	1.467	0.00079996	6.8858	0.0037547	8.3529	0.0045547	545.2866309953376	29.763	0.1448	29.763	29.715	29.86	0	1215	31	0.8891654	0.018395007	0.8891654	360.65366		7.4611816	0.0039562	0.0015432	0.00075972	NaN	9.746	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10914	+		11148	8622	6484	6616							0.009491352350323723
IYLSLHTGEG	10	Unmodified						0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.282389	1088.55022	1.1451	0.00062438	3.5207	0.0019198	4.6658	0.0025442	545.2844906816448	29.762	0.12065	29.755	29.707	29.828	-0.0070667	1215	40	0.8891654	0.023914814	0.88764596	360.65366		9.700043	-0.0039562	-0.0021266	-0.00075972	NaN	9.746	117	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11975	+		11149	8622	6484	6616							0.009491352350323723
IYLSQSIKNF	10	Unmodified	_IYLSQSIKNF_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.83478840565	2	606.834788	1211.65502	0.71043	0.00043111	-8.8658	-0.0053801	-8.1554	-0.004949	606.8308524182687	28.58	0.16886	28.572	28.475	28.644	-0.0083485	1137	43	0.9369253	0.02568084	0.93540585	379.54257	0	10.403137						142	8	3	NaN	NaN	NaN	0.5626	1	16098	16098		16.858	2.0043	1	15653			11150	13876	6485	6617	8832	8832					0.05766256711604001
IYLSQSIKNF	10	Unmodified						0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.834788	1211.65502	1.2591	0.00076409	-10.196	-0.0061875	-8.9372	-0.0054234	606.8293257594551	28.556	0.12068	28.556	28.484	28.605	0	1134	46	0.9387595	0.027513683	0.9387595	380.2856		11.14563	-0.0075285	-0.000783	0.0016768	NaN	16.858	147	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17101			11151	13876	6485	6617							0.05766256711604001
IYLTFPVAM	9	Unmodified	_IYLTFPVAM_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7857213355501	2	527.785721	1053.55689	1.5567	0.00082158	-0.93347	-0.00049267	0.62319	0.00032891	527.7851364843525	34.445	0.16886	34.445	34.372	34.541	0	1251	64	0.8670771	0.038685918	0.8670771	351.84042	0	15.697876						258	8	4	NaN	NaN	NaN	0.13477	1	10804	10804		30.791	5.0393	1	36409			11152	6034	6486	6618	8833	8833					0.03225356862071749
IYLTFPVAM	9	Unmodified	_IYLTFPVAM_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5641662045	1	1054.56417	1053.55689	2.2688	0.0023925	-0.48654	-0.00051308	1.7822	0.0018795	1054.5639476746628	34.445	0.21703	34.445	34.3	34.517	0	75	112	1.5741152	0.06539607	1.5741152	319.37424	0	13.268311						316	10	2	NaN	NaN	NaN	0.0031782	1	10807	10807		107.47	57.437	1	104900			11153	6034	6486	6618	8834	8834					0.03225356862071749
IYLTFPVAM	9	Unmodified	_IYLTFPVAM_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7857213355501	2	527.785721	1053.55689	0.89347	0.00047156	-1.3638	-0.00071979	-0.47032	-0.00024823	527.7851131545596	34.443	0.19289	34.443	34.37	34.563	-0.0006485	1251	58	0.8670771	0.035001516	0.8655577	351.84042	0	14.20285						282	9	4	NaN	NaN	NaN	0.17818	1	10580	10580		26.732	5.7791	1	35740			11154	6034	6486	6618	8835	8835					0.03225356862071749
IYLTFPVAM	9	Unmodified	_IYLTFPVAM_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5641662045	1	1054.56417	1053.55689	1.5545	0.0016393	2.0398	0.0021511	3.5942	0.0037904	1054.5669751891205	34.443	0.14463	34.443	34.37	34.515	-0.0006485	72	160	1.5758814	0.09375501	1.5743619	319.73257	0	19.022095						324	7	2	NaN	NaN	NaN	0.00012335	1	10583	10583		121.49	55.817	1	101590			11155	6034	6486	6618	8836	8836					0.03225356862071749
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(66)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7831786466	2	535.783179	1069.5518	2.0024	0.0010729	-3.3419	-0.0017905	-1.3395	-0.00071767	535.7811533577717	30.391	0.26544	30.391	30.318	30.584	0	1251	82	0.8670771	0.04973364	0.8670771	351.77255	0	20.17688						316	12	2	NaN	NaN	NaN	0.024986	1	11546	11546		65.672	21.425	1	122520			11156	6034	6486	6619	8837	8837		610			0.019810529994401804
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(140)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5590808266	1	1070.55908	1069.5518	2.0612	0.0022066	-2.3901	-0.0025587	-0.32893	-0.00035214	1070.5579191913357	30.366	0.19307	30.366	30.27	30.463	0	87	148	1.5670487	0.0866791	1.5670487	317.87906	0	17.583069						765	9	4	NaN	NaN	NaN	9.8813E-12	1	11547	11547		144.54	61.685	1	210130			11157	6034	6486	6619	8838	8838		610			0.019810529994401804
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(100)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5590808266	1	1070.55908	1069.5518	1.2598	0.0013487	-2.5902	-0.002773	-1.3304	-0.0014242	1070.5582986408551	30.366	0.21716	30.359	30.287	30.504	-0.0064106	90	133	1.5652816	0.077797174	1.5637622	317.5206	0	15.781311						934	10	5	NaN	NaN	NaN	0.0055068	1	11259	11259		101.55	51.522	1	224570			11158	6034	6486	6619	8839	8839		610			0.019810529994401804
IYLTFPVAMF	10	Unmodified	_IYLTFPVAMF_					0	0	0		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1201.6325801207	1	1201.63258	1200.6253	1.783	0.0021425	0.64228	0.00077179	2.4253	0.0029143	1201.6309482698175	39.694	0.072296	39.694	39.694	39.767	0	54	58	1.5864743	0.0335356	1.5864743	321.3717	0	6.793274						114	4	3	NaN	NaN	NaN	0.1159	1	16503	16503		64.55	39.589	1	8674.5			11159	6034	6487	6620	8840	8840					0.033016014419217754
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(160)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.3173856047	2	609.317386	1216.62022	0.62244	0.00037926	-3.1312	-0.0019079	-2.5088	-0.0015287	609.3156871849922	35.241	0.24129	35.241	35.168	35.41	0	1137	100	0.9369253	0.060575783	0.9369253	379.52512	0	24.53775						792	11	5	NaN	NaN	NaN	5.3368E-19	1	16905	16905		158.52	84.19	1	312430			11160	6034	6487	6621	8841	8841		610			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(140)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3173856047	2	609.317386	1216.62022	0.92515	0.00056371	-3.2673	-0.0019908	-2.3422	-0.0014271	609.315590566697	35.239	0.33772	35.239	35.119	35.456	-4.1962E-05	1134	97	0.9387595	0.05873698	0.93724006	380.26813	0	23.792908						860	15	5	NaN	NaN	NaN	9.5732E-09	1	16231	16231		136.23	61.899	1	316470			11161	6034	6487	6621	8842	8842		610			0.02057297579290207
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.6132248871	1	1046.61322	1045.60595	1.4237	0.0014901	4.3453	0.0045479	5.7691	0.006038	1046.6180777639745	34.107	0.0965	34.107	34.083	34.179	0	129	100	1.5422925	0.05835092	1.5422925	312.94843	0	11.840057						212	5	3	NaN	NaN	NaN	0.030391	1	10465	10465		58.599	14.297	1	19630			11162	5408	6488	6622	8843	8843					0.08496968422650752
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.6132248871	1	1046.61322	1045.60595	1.1531	0.0012069	3.6507	0.0038209	4.8038	0.0050278	1046.6171222496253	34.106	0.12072	34.105	34.056	34.177	-0.0012474	129	94	1.5422925	0.0548203	1.540773	312.94843	0	11.123657						223	6	3	NaN	NaN	NaN	0.032417	1	10255	10255		55.947	17.029	1	19850			11163	5408	6488	6622	8844	8844					0.08496968422650752
IYLYEEGLARF	11	Unmodified	_IYLYEEGLARF_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3586276427001	2	687.358628	1372.7027	1.6871	0.0011597	-1.955	-0.0013438	-0.26782	-0.00018409	687.3575071801124	27.277	0.19304	27.277	27.157	27.35	0	1062	49	0.9827221	0.02927363	0.9827221	397.5681	0	11.842865						165	9	4	NaN	NaN	NaN	0.03503	1	19826	19826		53.652	33.138	1	16035			11164	2224	6489	6623	8845	8845					0.03125910911808205
IYLYEEGLARF	11	Unmodified	_IYLYEEGLARF_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3586276427001	2	687.358628	1372.7027	1.1704	0.00080451	-1.7279	-0.0011877	-0.55751	-0.00038321	687.3575475708902	27.301	0.19305	27.291	27.194	27.387	-0.010126	1059	64	0.98455137	0.038419545	0.9830319	398.30817	0	15.542969						181	9	4	NaN	NaN	NaN	0.031011	1	18893	18893		55.958	29.843	1	18097			11165	2224	6489	6623	8846	8846					0.03125910911808205
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.28354278735	2	565.283543	1128.55253	1.0449	0.00059069	-2.4497	-0.0013848	-1.4048	-0.00079411	565.2821972487436	33.793	0.096489	33.793	33.745	33.842	0	1236	55	0.876284	0.033128858	0.876284	355.2714	0	13.431427						100	5	2	NaN	NaN	NaN	0.49672	1	14023	14023		9.746	2.8828	1	11283			11166	4420	6490	6624	8847	8847					-0.0066015235152008245
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1129.5598091081	1	1129.55981	1128.55253	1.3771	0.0015555	-0.33552	-0.00037899	1.0416	0.0011765	1129.5595613762255	33.793	0.096539	33.793	33.769	33.866	0	57	85	1.5847093	0.049449682	1.5847093	321.24738	0	10.024292						200	5	3	NaN	NaN	NaN	0.024221	1	14024	14024		66.656	34.204	1	18609			11167	4420	6490	6624	8848	8848					-0.0066015235152008245
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.28354278735	2	565.283543	1128.55253	0.74852	0.00042313	-1.3596	-0.00076855	-0.61106	-0.00034542	565.2829154623545	33.792	0.12069	33.79	33.766	33.887	-0.0018501	1233	52	0.87812483	0.03128332	0.8766054	356.01767	0	12.6831665						105	6	2	NaN	NaN	NaN	0.12945	1	13581	13581		31.561	4.8295	1	10990			11168	4420	6490	6624	8849	8849					-0.0066015235152008245
IYMDTLNIF	9	Unmodified	_IYMDTLNIF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.5598091081	1	1129.55981	1128.55253	0.64657	0.00073034	-0.75191	-0.00084933	-0.10534	-0.00011899	1130.5622177969967	33.792	0.072445	33.79	33.766	33.838	-0.0018501	60	58	1.582944	0.03354621	1.5814246	320.88956	0	6.8003845						127	4	3	NaN	NaN	NaN	0.026295	1	13582	13582		63.958	26.656	1	8949			11169	4420	6490	6624	8850	8850					-0.0066015235152008245
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(59)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.2810000984	2	573.281	1144.54745	1.4755	0.00084585	-0.37206	-0.00021329	1.1034	0.00063256	573.2813028721206	30.535	0.24135	30.535	30.487	30.728	0	1218	64	0.8873258	0.038623214	0.8873258	359.68735	0	15.656342						327	11	4	NaN	NaN	NaN	0.030391	1	14608	14608		58.599	11.118	1	74216			11170	4420	6490	6625	8851	8851		472			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(55)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1145.5547237301998	1	1145.55472	1144.54745	2.415	0.0027665	-0.74908	-0.00085811	1.6659	0.0019084	1145.5534275293394	30.535	0.14484	30.535	30.511	30.656	0	57	82	1.5847093	0.0476861	1.5847093	321.1931	0	9.665161						265	7	4	NaN	NaN	NaN	0.032764	1	14609	14609		55.494	13.709	1	28853			11171	4420	6490	6625	8852	8852		472			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(59)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2810000984	2	573.281	1144.54745	0.89723	0.00051436	-0.27322	-0.00015663	0.62401	0.00035773	573.2809780571965	30.534	0.24128	30.529	30.48	30.722	-0.0057545	1215	55	0.8891654	0.033110976	0.88764596	360.43304	0	13.4219055						353	11	5	NaN	NaN	NaN	0.030391	1	14130	14130		58.599	26.146	1	79204			11172	4420	6490	6625	8853	8853		472			-0.019044562141289134
IYMDTLNIFM	10	Unmodified	_IYMDTLNIFM_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.80378509045	2	630.803785	1259.59302	1.2404	0.00078247	-2.8079	-0.0017712	-1.5674	-0.00098874	630.8014094358228	35.868	0.1687	35.868	35.795	35.964	0	1137	55	0.9369253	0.033025324	0.9369253	379.37982	0	13.37262						184	8	3	NaN	NaN	NaN	0.21269	1	17986	17986		34.439	8.6378	1	17134			11173	4420	6491	6626	8854	8854					-0.026395540234034343
IYMDTLNIFM	10	Unmodified	_IYMDTLNIFM_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.80378509045	2	630.803785	1259.59302	0.98375	0.00062055	-0.41991	-0.00026488	0.56384	0.00035567	630.8040526908354	35.866	0.12046	35.867	35.843	35.964	0.0011024	1137	46	0.9369253	0.027516663	0.93540585	379.37982	0	11.142059						125	6	2	NaN	NaN	NaN	0.37681	1	17215	17215		24.562	11.099	1	13912			11174	4420	6491	6626	8855	8855					-0.026395540234034343
IYMDTLNIFM	10	Oxidation (M)	_IYM(Oxidation (M))DTLNIFM_		IYM(1)DTLNIFM		IYM(58)DTLNIFM(-58)	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.8012424015	2	638.801242	1275.58793	1.4466	0.0009241	-1.4412	-0.00092063	0.0054189	3.4616E-06	638.7995436223667	32.828	0.2172	32.828	32.732	32.949	0	1134	61	0.9387595	0.036674976	0.9387595	380.07086	0	14.848419						306	10	4	NaN	NaN	NaN	0.025854	1	18331	18331		61.271	33.482	2	55812			11175	4420	6491	6627	8856	8856		472;473			-0.038838578860350026
IYMDTLNIFM	10	2 Oxidation (M)	_IYM(Oxidation (M))DTLNIFM(Oxidation (M))_		IYM(1)DTLNIFM(1)		IYM(76)DTLNIFM(76)	0	0	2		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.79869971255	2	646.7987	1291.58285	1.8055	0.0011678	-2.1885	-0.0014155	-0.38302	-0.00024774	646.7967547870501	29.618	0.19306	29.618	29.57	29.763	0	1122	70	0.9460945	0.04217851	0.9460945	382.98975	0	17.07434						285	9	4	NaN	NaN	NaN	0.0065408	1	18612	18612		75.698	51.136	1	62164			11176	4420	6491	6628	8857	8857		472;473			-0.05128161748621096
IYMDTLNIFM	10	2 Oxidation (M)	_IYM(Oxidation (M))DTLNIFM(Oxidation (M))_		IYM(1)DTLNIFM(1)		IYM(73)DTLNIFM(73)	0	0	2		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.79869971255	2	646.7987	1291.58285	1.4068	0.0009099	-1.3804	-0.00089283	0.026386	1.7067E-05	646.7976853715792	29.618	0.16891	29.61	29.562	29.731	-0.0070648	1119	82	0.9479278	0.049513936	0.94640833	383.73184	0	20.043793						281	8	3	NaN	NaN	NaN	0.0085408	1	17783	17783		73.133	37.836	1	64784			11177	4420	6491	6628	8858	8858		472;473			-0.05128161748621096
IYMEDGLIKQI	11	Unmodified	_IYMEDGLIKQI_					0	0	0		nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000519672.1_1_5:146788331-146833150:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.8548635332501	2	661.854864	1321.69517	1.9764	0.0013081	-2.4892	-0.0016475	-0.51277	-0.00033938	661.8516528827839	25.781	0.048256	25.781	25.757	25.805	0	1053	46	0.9882094	0.027439594	0.9882094	399.94186	0	11.105194						63	3	2	NaN	NaN	NaN	0.77466	1	19134	19134		1.1768	0.48567	1	6001			11178	1106;1927	6492	6629	8859	8859					0.04719435319884724
IYMEDGLIKQI	11	Unmodified						0	0	0		nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000519672.1_1_5:146788331-146833150:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	661.854864	1321.69517	2.6276	0.0017391	-2.9794	-0.001972	-0.35189	-0.0002329	661.8531868068683	25.805	0.048286	25.793	25.769	25.817	-0.0116	1056	43	0.9863805	0.025606155	0.9848611	399.2017		10.36319	0.0061371	-0.00022398	-0.0016742	NaN	1.1768	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6089.8			11179	1106;1927	6492	6629							0.04719435319884724
IYMGITVNL	9	Oxidation (M)	_IYM(Oxidation (M))GITVNL_		IYM(1)GITVNL		IYM(53)GITVNL	0	0	1		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5492444218	1	1039.54924	1038.54197	1.4876	0.0015464	-1.4916	-0.0015506	-0.0040576	-4.2181E-06	1039.5477518939178	27.446	0.12067	27.446	27.398	27.519	0	156	73	1.5263584	0.042520404	1.5263584	309.74268	0	8.628632						292	6	4	NaN	NaN	NaN	0.036546	1	10147	10147		52.624	22.014	1	47380			11180	4362	6493	6630	8860	8860		465			0.024238649940798496
IYMGITVNL	9	Oxidation (M)	_IYM(Oxidation (M))GITVNL_		IYM(1)GITVNL		IYM(83)GITVNL	0	0	1		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5492444218	1	1039.54924	1038.54197	1.0767	0.0011192	-1.9176	-0.0019935	-0.84097	-0.00087423	1039.5484579324336	27.446	0.16891	27.436	27.411	27.58	-0.010126	156	70	1.5263584	0.040737867	1.5248389	309.74268	0	8.266876						267	8	4	NaN	NaN	NaN	0.013281	1	9941	9941		82.96	30.336	1	46617			11181	4362	6493	6630	8861	8861		465			0.024238649940798496
IYMNYNKEF	9	Unmodified	_IYMNYNKEF_					0	0	0			REV__ENSG00000113140|ENST00000231061|SPARC	REV__ENSG00000113140|ENST00000231061|SPARC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.2840741036	2	611.284074	1220.5536	1.509	0.00092241	1.4809	0.00090526	2.9899	0.0018277	611.2793447056293	25.491	0.12063	25.491	25.443	25.564	0	1185	67	0.90755045	0.04041654	0.90755045	367.6128	0	16.371155						208	6	3	NaN	NaN	NaN	0.11656	1	16991	16991		33.425	8.8633	1	44920	+		11182	9140	6494	6631	8862	8862					-0.04785937982614996
IYMNYNKEF	9	Unmodified						0	0	0			REV__ENSG00000113140|ENST00000231061|SPARC	REV__ENSG00000113140|ENST00000231061|SPARC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.284074	1220.5536	1.509	0.00092241	1.4809	0.00090526	2.9899	0.0018277	611.2793447056293	25.491	0.12063	25.491	25.443	25.564	0	1185	67	0.90755045	0.04041654	0.90755045	367.6128		16.371155	0	0	0	NaN	33.425	208	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44920	+		11183	9140	6494	6631							-0.04785937982614996
IYMPMIPEL	9	2 Oxidation (M)	_IYM(Oxidation (M))PM(Oxidation (M))IPEL_		IYM(1)PM(1)IPEL		IYM(47)PM(47)IPEL	0	0	2		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.7797786779001	2	569.779779	1137.545	0.9216	0.00052511	5.4868	0.0031263	6.4084	0.0036514	569.7817237761411	28.942	0.21719	28.933	28.837	29.054	-0.0083485	1209	85	0.892844	0.051505983	0.8913246	361.9507	0	20.880066						311	10	3	NaN	NaN	NaN	0.049695	1	13897	13897		47.04	30.456	1	38916			11184	2691	6495	6632	8863	8863		308;309			-0.018266279434101307
IYMPQFLYP	9	Unmodified	_IYMPQFLYP_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|129|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.2964531973502	2	586.296453	1170.57835	1.8944	0.0011107	7.8027	0.0045747	9.6971	0.0056854	586.3011996250352	28.339	0.09647	28.339	28.315	28.412	0	1179	82	0.9112251	0.049620926	0.9112251	369.27734	0	20.10907						162	5	3	NaN	NaN	NaN	0.20577	1	15508	15508		24.961	3.126	1	19663			11185	7859	6496	6633	8864	8864					-0.00011258109202572086
IYNEFDSGFF	10	Unmodified	_IYNEFDSGFF_					0	0	0			REV__ENSG00000132965|ENST00000380490|ALOX5AP	REV__ENSG00000132965|ENST00000380490|ALOX5AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.77185379785	2	619.771854	1237.52915	0.70248	0.00043538	1.9551	0.0012117	2.6576	0.0016471	620.2740840772012	34.516	0.16887	34.515	34.419	34.587	-0.0006485	1173	76	0.91489893	0.045895696	0.9133795	370.5325	0	18.587708						269	8	4	NaN	NaN	NaN	0.53991	1	16729	16729		17.799	2.3363	1	18335	+		11186	9553	6497	6634	8865	8865					-0.08010874864476136
IYNELFIYF	9	Unmodified	_IYNELFIYF_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.31315750655	2	611.313158	1220.61176	1.1824	0.00072279	-6.1575	-0.0037642	-4.9751	-0.0030414	611.3097591707641	27.953	0.14478	27.953	27.881	28.026	0	1149	79	0.92958635	0.04771352	0.92958635	376.53848	0	19.326843						170	7	3	NaN	NaN	NaN	0.42773	1	16998	16998		12.588	0.53918	1	17860	+		11187	13400	6498	6635	8866	8866					0.010280669343273985
IYNELFIYF	9	Unmodified						0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.313158	1220.61176	1.1824	0.00072279	-6.1575	-0.0037642	-4.9751	-0.0030414	611.3097591707641	27.953	0.14478	27.953	27.881	28.026	0	1149	79	0.92958635	0.04771352	0.92958635	376.53848		19.326843	0	0	0	NaN	12.588	170	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17860	+		11188	13400	6498	6635							0.010280669343273985
IYNELLYDLL	10	Unmodified	_IYNELLYDLL_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.8422790867502	2	634.842279	1267.67001	1.2779	0.00081124	-2.1398	-0.0013584	-0.86193	-0.00054719	634.8407609624834	37	0.12036	37	36.976	37.097	0	1095	52	0.9625867	0.031145215	0.9625867	389.7437	0	12.610443						162	6	3	NaN	NaN	NaN	0.26393	1	18189	18189		30.035	14.573	1	14124			11189	1896	6499	6636	8867	8867					0.0468770378897716
IYNELLYDLL	10	Unmodified	_IYNELLYDLL_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.8422790867502	2	634.842279	1267.67001	1.2588	0.00079916	-2.2562	-0.0014323	-0.99734	-0.00063315	634.8410914921687	37.022	0.1202	37.024	36.976	37.096	0.0022507	1095	46	0.9625867	0.027478099	0.96106726	389.7437	0	11.125671						115	6	2	NaN	NaN	NaN	0.38071	1	17376	17376		24.4	6.4306	1	12456			11190	1896	6499	6636	8868	8868					0.0468770378897716
IYNETVRDLL	10	Unmodified	_IYNETVRDLL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3351525464001	2	618.335153	1234.65575	1.0839	0.0006702	-2.4757	-0.0015308	-1.3918	-0.00086062	618.3335889489153	23.995	0.096485	23.995	23.971	24.068	0	1116	52	0.94976085	0.031161964	0.94976085	384.66144	0	12.62088						117	5	3	NaN	NaN	NaN	0.16811	1	17399	17399		38.269	4.8441	1	14794			11191	6056	6500	6637	8869	8869					0.04781051360669153
IYNETVRDLL	10	Unmodified	_IYNETVRDLL_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3351525464001	2	618.335153	1234.65575	1.0172	0.000629	-0.72082	-0.00044571	0.29643	0.00018329	618.3348415425172	24.019	0.096491	24.006	23.982	24.079	-0.012747	1119	40	0.9479278	0.023829699	0.94640833	383.919	0	9.651245						114	5	3	NaN	NaN	NaN	0.37846	1	16670	16670		24.493	6.6944	1	13969			11192	6056	6500	6637	8870	8870					0.04781051360669153
IYNEYIYDLF	10	Unmodified	_IYNEYIYDLF_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8240863336	2	676.824086	1351.63362	1.5575	0.0010541	-2.2164	-0.0015001	-0.65893	-0.00044598	676.8226234436494	34.638	0.26537	34.638	34.565	34.831	0	1080	58	0.9717421	0.034783065	0.9717421	393.18716	0	14.073944						519	12	5	NaN	NaN	NaN	0.0014599	1	19563	19563		87.778	26.797	1	121070			11193	3147	6501	6638	8871	8871					-0.02813173107779221
IYNEYIYDLF	10	Unmodified	_IYNEYIYDLF_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.8240863336	2	676.824086	1351.63362	1.183	0.00080066	-1.5328	-0.0010374	-0.34981	-0.00023676	676.8228980615604	34.636	0.24102	34.636	34.587	34.828	-0.0006485	1080	67	0.9717421	0.040277243	0.97022265	393.18716	0	16.297028						472	11	5	NaN	NaN	NaN	0.00031519	1	18685	18685		96.341	43.561	1	122330			11194	3147	6501	6638	8872	8872					-0.02813173107779221
IYNGDMEKI	9	Oxidation (M)	_IYNGDM(Oxidation (M))EKI_		IYNGDM(1)EKI		IYNGDM(43)EKI	0	0	1		BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant;ENST00000550043.1_1_14:28733783-28734191:+|nuORF;ENSG00000176171|ENST00000368636|BNIP3	BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant	BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7604318318	2	549.760432	1097.50631	1.3208	0.00072615	-2.2909	-0.0012594	-0.97003	-0.00053329	549.7584114195898	15.294	0.09612	15.294	15.27	15.366	0	1275	64	0.85233563	0.038698435	0.85233563	345.67993	0	15.694824						162	5	3	NaN	NaN	NaN	0.059222	1	12731	12731		42.995	15.206	1	19509			11195	67	6502	6639	8873	8873		6			-0.03854217253592651
IYNGDMEKILL	11	Oxidation (M)	_IYNGDM(Oxidation (M))EKILL_		IYNGDM(1)EKILL		IYNGDM(46)EKILL	0	0	1		BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant;ENST00000550043.1_1_14:28733783-28734191:+|nuORF;ENSG00000176171|ENST00000368636|BNIP3	BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant	BNIP3|p.R103Gfs*8|1|0.13|ENSG00000176171|chr10:131970946-131970946|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8444958122001	2	662.844496	1323.67444	1.7833	0.0011821	-3.3849	-0.0022437	-1.6016	-0.0010616	662.8423315622382	22.79	0.24105	22.776	22.68	22.921	-0.01354	1095	46	0.9625867	0.027475119	0.96106726	389.56598	0	11.119385						214	11	3	NaN	NaN	NaN	0.066897	1	18297	18297		45.55	15.952	1	24195			11196	67	6503	6640	8874	8874		6			0.025548449402094775
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5407882255	1	1055.54079	1054.53351	2.3676	0.0024991	-0.83424	-0.00088058	1.5333	0.0016185	1055.540209336905	28.315	0.16888	28.315	28.267	28.436	0	144	118	1.533442	0.069040656	1.533442	311.1183	0	14.007599						503	8	4	NaN	NaN	NaN	0.030669	1	10842	10842		58.235	10.754	1	93741			11197	2056	6504	6641	8875	8875					0.008426343491009902
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.8244206846	2	637.824421	1273.63429	1.263	0.00080559	-1.5412	-0.00098303	-0.2782	-0.00017744	637.8235397237834	32.876	0.12069	32.876	32.828	32.949	0	1137	58	0.9369253	0.034846902	0.9369253	379.33447	0	14.10849						157	6	3	NaN	NaN	NaN	0.33431	1	18294	18294		24.4	6.4306	1	19187			11198	893	6505	6642	8876	8876					0.008416663319394502
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8244206846	2	637.824421	1273.63429	1.3628	0.00086921	-1.7009	-0.0010849	-0.33812	-0.00021566	637.8234110540621	32.899	0.14472	32.897	32.849	32.993	-0.0024757	1134	46	0.9387595	0.027513683	0.93724006	380.07712	0	11.139496						128	7	2	NaN	NaN	NaN	0.47586	1	17486	17486		19.336	0.17285	1	20674			11199	893	6505	6642	8877	8877					0.008416663319394502
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.33970660805	2	598.339707	1194.66486	1.9772	0.001183	-1.7804	-0.0010653	0.19678	0.00011774	598.3387399084505	29.787	0.38616	29.787	29.739	30.125	0	1128	73	0.9424274	0.044014752	0.9424274	381.83258	0	17.832947						725	17	5	NaN	NaN	NaN	0.00098176	1	16304	16304		89.374	25.643	1	732750			11200	3391	6506	6643	8878	8878					0.0753144471698306
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.33970660805	2	598.339707	1194.66486	1.414	0.00084606	-1.8719	-0.00112	-0.45785	-0.00027395	598.3386952091365	29.811	0.36194	29.803	29.731	30.093	-0.0070648	1125	79	0.9442611	0.04768777	0.94274163	382.5755	0	19.321106						778	16	5	NaN	NaN	NaN	8.4778E-05	1	15668	15668		111.05	47.318	1	706750			11201	3391	6506	6643	8879	8879					0.0753144471698306
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3089377959001	2	598.308938	1194.60332	0.74803	0.00044755	-3.2359	-0.0019361	-2.4879	-0.0014885	598.3068675539964	27.808	0.16897	27.798	27.75	27.919	-0.009552	1179	88	0.9112251	0.053267717	0.90970564	369.1909	0	21.58191						308	8	4	NaN	NaN	NaN	0.033206	1	15665	15665		58.235	37.787	1	57172			11202	7973	6507	6644	8880	8880					0.013805130177161118
IYNILWSRDTN	11	Unmodified	_IYNILWSRDTN_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.8567834455	2	697.856783	1393.69901	1.7772	0.0012402	-9.6811	-0.006756	-7.9039	-0.0055158	697.8497283315209	25.926	0.21719	25.926	25.877	26.094	0	1092	88	0.9644182	0.053078473	0.9644182	390.10455	0	21.470123						419	10	4	NaN	NaN	NaN	0.47586	1	20008	20008		19.336	2.4781	1	56407	+		11203	9279	6508	6645	8881	8881					0.01791241137925681
IYNILWSRDTN	11	Unmodified						0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	697.856783	1393.69901	1.7772	0.0012402	-9.6811	-0.006756	-7.9039	-0.0055158	697.8497283315209	25.926	0.21719	25.926	25.877	26.094	0	1092	88	0.9644182	0.053078473	0.9644182	390.10455		21.470123	0.0059153	0.00046834	0.00075972	NaN	19.336	419	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56407	+		11204	9279	6508	6645							0.01791241137925681
IYNILWSRDTN	11	Unmodified						0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	697.856783	1393.69901	1.7805	0.0012425	-10.237	-0.007144	-8.4565	-0.0059014	697.8492673476977	25.925	0.1448	25.914	25.89	26.034	-0.0116	1092	97	0.9644182	0.058559954	0.96289873	390.10455		23.687317	-0.0059153	-0.00030756	-0.00075972	NaN	19.336	401	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65991	+		11205	9279	6508	6645							0.01791241137925681
IYNKYWPLF	9	Unmodified	_IYNKYWPLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.32914192175	2	622.329142	1242.64373	1.4938	0.00092964	-1.7407	-0.0010833	-0.24692	-0.00015366	622.3279511502712	29.739	0.16894	29.739	29.715	29.884	0	1134	58	0.9387595	0.034850597	0.9387595	380.17877	0	14.1138						209	8	3	NaN	NaN	NaN	0.043119	1	17600	17600		49.833	30.715	1	33461			11206	1483	6509	6646	8882	8882					0.03211479408105333
IYNKYWPLF	9	Unmodified	_IYNKYWPLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.32914192175	2	622.329142	1242.64373	0.61258	0.00038123	-1.5294	-0.00095181	-0.91685	-0.00057058	622.3288058663725	29.762	0.193	29.755	29.659	29.852	-0.0070667	1128	55	0.9424274	0.033007503	0.94090796	381.66418	0	13.367371						283	9	4	NaN	NaN	NaN	0.018156	1	16857	16857		74.332	54.996	1	38647			11207	1483	6509	6646	8883	8883					0.03211479408105333
IYNKYWPLFV	10	Unmodified	_IYNKYWPLFV_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8633488798499	2	671.863349	1341.71214	0.76407	0.00051335	-5.2617	-0.0035352	-4.4976	-0.0030218	671.8585211754005	30.994	0.096556	30.994	30.946	31.042	0	1068	67	0.97906286	0.040251255	0.97906286	396.179	0	16.28772						129	5	3	NaN	NaN	NaN	0.73444	1	19442	19442		5.6942	1.7661	1	8610.4			11208	1483	6510	6647	8884	8884					0.05495723987951351
IYNKYWPLFV	10	Unmodified	_IYNKYWPLFV_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8633488798499	2	671.863349	1341.71214	1.194	0.0008022	-6.758	-0.0045405	-5.564	-0.0037383	671.8568132107769	31.017	0.096565	31.012	30.988	31.084	-0.0050716	1062	52	0.9827221	0.031098247	0.98120266	397.6597	0	12.583954						82	5	2	NaN	NaN	NaN	0.56921	1	18573	18573		16.584	11.855	1	7681.1			11209	1483	6510	6647	8885	8885					0.05495723987951351
IYNLSPPG	8	Unmodified	_IYNLSPPG_					0	0	0			REV__ENSG00000121101|ENST00000349033|TEX14	REV__ENSG00000121101|ENST00000349033|TEX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	860.4512449367	1	860.451245	859.443968	2.035	0.001751	-1.1409	-0.00098166	0.89412	0.00076934	860.4512334000798	25.949	0.21722	25.938	25.841	26.059	-0.0116	396	49	1.3840506	0.028582692	1.3825312	281.63025	0	5.816101						154	10	2	NaN	NaN	NaN	0.27223	1	5390	5390		44.302	5.3845	1	16526	+		11210	9326	6511	6648	8886	8886					0.008624244603765874
IYNLSPPG	8	Unmodified						0	0	0			REV__ENSG00000121101|ENST00000349033|TEX14	REV__ENSG00000121101|ENST00000349033|TEX14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	860.451245	859.443968	2.035	0.001751	-1.1409	-0.00098166	0.89412	0.00076934	860.4512334000798	25.949	0.21722	25.938	25.841	26.059	-0.0116	396	49	1.3840506	0.028582692	1.3825312	281.63025		5.816101	0.0061493	-0.00042655	-0.00075972	NaN	44.302	154	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16526	+		11211	9326	6511	6648							0.008624244603765874
IYNNIKNFVRF	11	Unmodified	_IYNNIKNFVRF_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion	nc|ENSG00000017260|P98194-2|ATP2C1;PSMD1-ATP2C1|1|fusion	nc|ENSG00000017260|P98194-2|ATP2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.5979829070666	3	476.597983	1426.77212	1.7007	0.00081056	-3.4393	-0.0016392	-1.7386	-0.00082861	476.5960636127085	23.441	0.072426	23.441	23.417	23.489	0	1389	37	0.7821392	0.022212982	0.7821392	474.44843	0	13.474457						71	4	2	NaN	NaN	NaN	0.12028	1	20261	20261		37.743	31.386	1	13007			11212	449;8107	6512	6649	8887	8887					0.07580414651192768
IYNNIKNFVRF	11	Unmodified	_IYNNIKNFVRF_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion	nc|ENSG00000017260|P98194-2|ATP2C1;PSMD1-ATP2C1|1|fusion	nc|ENSG00000017260|P98194-2|ATP2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.5979829070666	3	476.597983	1426.77212	1.5025	0.00071607	-3.0697	-0.001463	-1.5673	-0.00074695	476.59647148431526	23.561	0.14466	23.548	23.5	23.645	-0.013048	1386	37	0.78399014	0.022210538	0.7824707	475.57126	0	13.472992						151	7	3	NaN	NaN	NaN	0.29513	1	19300	19300		25.802	19.868	1	15233			11213	449;8107	6512	6649	8888	8888					0.07580414651192768
IYNPSMGVSVL	11	Unmodified	_IYNPSMGVSVL_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.3075491999001	2	590.307549	1178.60055	1.7717	0.0010458	-3.1208	-0.0018422	-1.3491	-0.00079639	590.3068766333311	28.001	0.096502	28.001	27.953	28.05	0	1176	85	0.9130621	0.05145037	0.9130621	369.99252	0	20.848816						249	5	4	NaN	NaN	NaN	0.026493	1	15789	15789		74.794	31.799	1	59287			11214	1760	6513	6650	8889	8889					0.018389215685601812
IYNPSMGVSVL	11	Unmodified	_IYNPSMGVSVL_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3075491999001	2	590.307549	1178.60055	0.85993	0.00050763	-1.0635	-0.00062778	-0.20354	-0.00012015	590.3069471751364	28.001	0.14479	27.992	27.968	28.112	-0.0089798	1179	67	0.9112251	0.040412188	0.90970564	369.2481	0	16.375885						143	7	2	NaN	NaN	NaN	0.22589	1	15207	15207		43.776	26.917	1	47210			11215	1760	6513	6650	8890	8890					0.018389215685601812
IYNPTTGEF	9	Unmodified	_IYNPTTGEF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.4887526549999	1	1041.48875	1040.48148	2.3416	0.0024388	0.24115	0.00025115	2.5828	0.0026899	1042.4921032016393	23.2	0.24117	23.2	23.103	23.345	0	252	136	1.4695803	0.079975605	1.4695803	298.21347	0	16.229004						644	11	3	NaN	NaN	NaN	1.4809E-12	1	10224	10224		152.67	79.538	1	188000			11216	747	6514	6651	8891	8891					-0.03714529064677663
IYNPTTGEF	9	Unmodified	_IYNPTTGEF_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.4887526549999	1	1041.48875	1040.48148	2.026	0.0021101	0.19916	0.00020742	2.2252	0.0023175	1042.4922506865778	23.199	0.33775	23.186	23.09	23.427	-0.013294	249	106	1.4713576	0.062176824	1.4698381	298.5741	0	12.6171875						726	15	3	NaN	NaN	NaN	0.0092442	1	10004	10004		93.929	35.693	1	192440			11217	747	6514	6651	8892	8892					-0.03714529064677663
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1154.5728166354	1	1154.57282	1153.56554	2.482	0.0028656	0.58642	0.00067706	3.0684	0.0035427	1154.5732976179022	27.35	0.12069	27.35	27.326	27.446	0	63	64	1.5811787	0.037077427	1.5811787	320.44763	0	7.5142517						130	6	2	NaN	NaN	NaN	0.02603	1	14924	14924		61.199	27.773	1	12334			11218	747	6515	6652	8893	8893					-0.0050999796776523
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1154.5728166354	1	1154.57282	1153.56554	1.9766	0.0022821	-0.922	-0.0010645	1.0546	0.0012176	1154.5718737564446	27.373	0.072418	27.363	27.339	27.411	-0.010126	57	52	1.5847093	0.030011892	1.5831898	321.16318	0	6.082306						118	4	3	NaN	NaN	NaN	0.039609	1	14432	14432		55.592	22.166	1	10041			11219	747	6515	6652	8894	8894					-0.0050999796776523
IYNQVFLLL	9	Unmodified	_IYNQVFLLL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8315174352001	2	561.831517	1121.64848	1.5294	0.00085929	-9.9748	-0.0056041	-8.4453	-0.0047448	561.8246836665988	36.639	0.16851	36.639	36.615	36.784	0	1182	61	0.9093879	0.036762178	0.9093879	368.72006	0	14.905579						203	8	3	NaN	NaN	NaN	0.20577	1	13766	13766		24.961	5.8427	1	17464			11220	8058	6516	6653	8895	8895					0.09252363550899645
IYNQVFLLL	9	Unmodified	_IYNQVFLLL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8315174352001	2	561.831517	1121.64848	1.4828	0.0008331	-3.689	-0.0020726	-2.2062	-0.0012395	561.829988615988	36.661	0.12024	36.663	36.591	36.711	0.0016747	1179	49	0.9112251	0.02940017	0.90970564	369.46497	0	11.920593						91	6	2	NaN	NaN	NaN	0.078597	1	13356	13356		38.918	12.186	1	8340.5			11221	8058	6516	6653	8896	8896					0.09252363550899645
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5989718064	1	1061.59897	1060.5917	2.3131	0.0024556	-1.9051	-0.0020224	0.40803	0.00043316	1061.5972907781463	26.239	0.072372	26.239	26.215	26.288	0	111	55	1.5529068	0.031832814	1.5529068	315.04425	0	6.458069						116	4	3	NaN	NaN	NaN	0.14301	1	11146	11146		29.598	13.014	1	11688			11222	3807	6517	6654	8897	8897					0.06382315994369492
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENSG00000153310|ENST00000694912|CYRIB	ENSG00000153310|ENST00000694912|CYRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5989718064	1	1061.59897	1060.5917	1.9053	0.0020226	1.0646	0.0011302	2.9699	0.0031528	1061.6004929632663	26.239	0.096506	26.228	26.204	26.3	-0.011137	111	64	1.5529068	0.037132382	1.5513873	315.04422	0	7.533203						123	5	3	NaN	NaN	NaN	0.043119	1	10898	10898		49.833	23.718	1	12113			11223	3807	6517	6654	8898	8898					0.06382315994369492
IYNRYYNWA	9	Unmodified	_IYNRYYNWA_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.8012799393001	2	631.80128	1261.58801	2.0699	0.0013078	-9.4748	-0.0059862	-7.4049	-0.0046784	631.7940470418449	25.853	0.12064	25.853	25.829	25.95	0	1104	100	0.9570911	0.060510516	0.9570911	387.53876	0	24.501495						192	6	2	NaN	NaN	NaN	0.47587	1	18028	18028		10.605	0.99332	1	24075			11224	1337	6518	6655	8899	8899					-0.032323537794809454
IYNRYYNWA	9	Unmodified	_IYNRYYNWA_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.5366121150667	3	421.536612	1261.58801	1.8903	0.00079682	-6.5859	-0.0027762	-4.6956	-0.0019794	421.53410523737426	25.853	0.096525	25.853	25.829	25.926	0	1395	37	0.7784366	0.022220135	0.7784366	472.7947	0	13.495728						124	5	4	NaN	NaN	NaN	0.55027	1	18029	18029		4.3102	0	1	11825			11225	1337	6518	6655	8900	8900					-0.032323537794809454
IYNSAKELEE	10	Unmodified	_IYNSAKELEE_					0	0	0			REV__tr|U7SRE7|U7SRE7_FUSNUYbaK/aminoacyl-tRNAsynthetase-associateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01574PE=4SV=1	REV__tr|U7SRE7|U7SRE7_FUSNUYbaK/aminoacyl-tRNAsynthetase-associateddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01574PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2956930349002	2	598.295693	1194.57683	0.80421	0.00048115	-1.8922	-0.0011321	-1.088	-0.00065096	598.2936977073576	31.983	0.07242	31.983	31.911	31.983	0	1173	79	0.91489893	0.04777533	0.91489893	370.67947	0	19.356598						94	4	2	NaN	NaN	NaN	0.66626	1	16290	16290		10.36	0.61416	1	8629.5	+		11226	13471	6519	6656	8901	8901					-0.012672206642491801
IYNSQLNIWI	10	Unmodified	_IYNSQLNIWI_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3402379243	2	632.340238	1262.66592	1.2795	0.00080906	-2.0023	-0.0012661	-0.72281	-0.00045706	632.8395702969203	32.37	0.072376	32.37	32.345	32.418	0	1128	37	0.9424274	0.022002578	0.9424274	381.5977	0	8.909058						99	4	3	NaN	NaN	NaN	0.23201	1	18060	18060		32.778	14.808	1	10151			11227	1974	6520	6657	8902	8902					0.045096590858975105
IYNSQLNIWI	10	Unmodified						0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.340238	1262.66592	0.88953	0.00056248	-4.0117	-0.0025368	-3.1222	-0.0019743	632.3388399905149	32.344	0.12067	32.341	32.316	32.437	-0.0037613	1122	43	0.9460945	0.025666952	0.9445751	383.08255		10.392792	-0.014504	-0.0018437	0.0010738	NaN	32.778	115	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14406			11228	1974	6520	6657							0.045096590858975105
IYNYPEQLF	9	Unmodified	_IYNYPEQLF_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.79258923995	2	593.792589	1185.57063	1.3278	0.00078842	0.47605	0.00028268	1.8038	0.0010711	593.792884656514	29.087	0.21718	29.087	29.039	29.256	0	1206	85	0.894683	0.051478148	0.894683	362.52023	0	20.858643						310	10	4	NaN	NaN	NaN	0.033694	1	16025	16025		69.363	46.029	1	95647			11229	4458	6521	6658	8903	8903					-0.0147369410515239
IYNYPEQLF	9	Unmodified	_IYNYPEQLF_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.79258923995	2	593.792589	1185.57063	0.93585	0.0005557	0.42594	0.00025292	1.3618	0.00080862	593.7926798283332	29.087	0.16895	29.079	29.031	29.2	-0.0077229	1206	79	0.894683	0.04781151	0.89316356	362.52023	0	19.372955						308	8	4	NaN	NaN	NaN	0.055363	1	15416	15416		50.315	29.76	1	112680			11230	4458	6521	6658	8904	8904					-0.0147369410515239
IYPCSLCWK	9	Unmodified	_IYPCSLCWK_					0	0	0		VPS41|p.M217I|1|0.16|ENSG00000006715|chr7:38795531-38795531|C/A|missense_variant	VPS41|p.M217I|1|0.16|ENSG00000006715|chr7:38795531-38795531|C/A|missense_variant	VPS41|p.M217I|1|0.16|ENSG00000006715|chr7:38795531-38795531|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.76700565365	2	556.767006	1111.51946	1.672	0.00093091	-1.2603	-0.00070169	0.4117	0.00022922	557.2652284942184	29.376	0.072374	29.368	29.344	29.417	-0.0077229	1257	43	0.86339295	0.025789201	0.8618735	350.10965	0	10.457642						70	4	3	NaN	NaN	NaN	0.65818	1	12959	12959		2.7852	0	1	3817.5			11231	14021	6522	6659	8905	8905					-0.03184057675207441
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5455392524	1	1054.54554	1053.53826	2.3717	0.0025011	-0.62457	-0.00065864	1.7472	0.0018425	1054.5453189143748	30.415	0.31374	30.415	30.318	30.632	0	99	160	1.5599792	0.09381461	1.5599792	316.50626	0	19.03418						1184	14	4	NaN	NaN	NaN	0.049695	1	10797	10797		47.04	5.5801	1	313480			11232	1840	6523	6660	8906	8906					0.01363518491848481
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5455392524	1	1054.54554	1053.53826	1.6916	0.0017839	1.5112	0.0015936	3.2028	0.0033775	1054.5477057233647	30.414	0.31365	30.407	30.287	30.6	-0.0064106	96	169	1.5617468	0.09913015	1.5602274	316.8649	0	20.11264						1000	14	3	NaN	NaN	NaN	0.056143	1	10576	10576		44.302	5.3845	1	317060			11233	1840	6523	6660	8907	8907					0.01363518491848481
IYPELQIERF	10	Unmodified	_IYPELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.35334529955	2	654.353345	1306.69214	1.6888	0.0011051	-7.3842	-0.0048319	-5.6955	-0.0037268	654.848459841315	26.336	0.096533	26.336	26.312	26.408	0	1104	61	0.9570911	0.036651254	0.9570911	387.3939	0	14.8350525						201	5	3	NaN	NaN	NaN	0.060038	1	18881	18881		51.467	32.13	1	35350			11234	869	6524	6661	8908	8908					0.051059282573760356
IYPELQIERF	10	Unmodified	_IYPELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.35334529955	2	654.353345	1306.69214	1.1134	0.00072859	-6.9447	-0.0045443	-5.8312	-0.0038157	654.8494948231129	26.36	0.12065	26.349	26.3	26.421	-0.011135	1101	61	0.95892316	0.036651254	0.9574037	388.13544	0	14.835022						227	6	4	NaN	NaN	NaN	0.28676	1	18048	18048		28.296	13.442	1	34898			11235	869	6524	6661	8909	8909					0.051059282573760356
IYPEVVHMF	9	Unmodified	_IYPEVVHMF_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.7862526518	2	567.786253	1133.55795	1.9529	0.0011088	-2.5255	-0.001434	-0.57267	-0.00032516	567.7847146939314	26.674	0.24142	26.674	26.529	26.77	0	1203	94	0.8965218	0.056984484	0.8965218	363.457	0	23.101929						341	11	3	NaN	NaN	NaN	0.13477	1	14223	14223		30.791	9.8386	1	113120			11236	882	6525	6662	8910	8910					-0.0034842876902985154
IYPEVVHMF	9	Unmodified	_IYPEVVHMF_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7862526518	2	567.786253	1133.55795	1.1903	0.00067581	-2.8612	-0.0016245	-1.6709	-0.00094874	567.7842124197143	26.697	0.26546	26.687	26.59	26.856	-0.010645	1203	100	0.8965218	0.060687065	0.89500237	363.457	0	24.603058						426	12	3	NaN	NaN	NaN	0.098515	1	13769	13769		36.036	16.918	1	121410			11237	882	6525	6662	8911	8911					-0.0034842876902985154
IYPEVVHMF	9	Oxidation (M)	_IYPEVVHM(Oxidation (M))F_		IYPEVVHM(1)F		IYPEVVHM(44)F	0	0	1		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.78370996285	2	575.78371	1149.55287	2.0552	0.0011834	-2.0318	-0.0011699	0.023469	1.3513E-05	576.2839984074351	22.453	0.26503	22.453	22.308	22.573	0	1215	112	0.8891654	0.06807256	0.8891654	360.41437	0	27.59253						666	12	4	NaN	NaN	NaN	0.056273	1	14780	14780		44.247	19.286	1	202140			11238	882	6525	6663	8912	8912		95			-0.0159273263166142
IYPFLFLGF	9	Unmodified	_IYPFLFLGF_					0	0	0		ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.6128309566	1	1116.61283	1115.60555	1.8077	0.0020185	0.28368	0.00031676	2.0914	0.0023353	1116.6130171264108	45.167	0.09589	45.167	45.095	45.191	0	57	40	1.5847093	0.022947788	1.5847093	321.29245	0	4.6525574						85	5	2	NaN	NaN	NaN	0.010172	1	13511	13511		92.036	47.403	1	6881.8			11239	3630	6526	6664	8913	8913					0.05237593493461645
IYPFLFLGF	9	Unmodified	_IYPFLFLGF_					0	0	0		ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.6128309566	1	1116.61283	1115.60555	0.43803	0.00048911	-1.325	-0.0014795	-0.88696	-0.00099039	1116.6122486592694	45.093	0.16774	45.105	45.057	45.224	0.011646	57	37	1.5847093	0.02118373	1.5831898	321.29245	0	4.2948914						93	8	2	NaN	NaN	NaN	0.055365	1	13120	13120		44.632	8.8878	1	5859			11240	3630	6526	6664	8914	8914					0.05237593493461645
IYPGFPKVT	9	Unmodified	_IYPGFPKVT_					0	0	0		ENST00000479516.1_1_6:37321940-37337593:+|nuORF;nc|ENSG00000112130|O76064-3|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF;ENSG00000112130|ENST00000373479|RNF8	ENST00000479516.1_1_6:37321940-37337593:+|nuORF	ENST00000479516.1_1_6:37321940-37337593:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.289485445	2	511.289485	1020.56442	1.8924	0.00096755	5.4336	0.0027781	7.326	0.0037457	511.2925366266216	18.002	0.24004	17.988	17.94	18.18	-0.013786	1488	85	0.7209441	0.0520218	0.71942466	292.6649	0	21.118073						424	11	4	NaN	NaN	NaN	0.14301	1	9214	9214		29.598	2.8668	1	102980			11241	1856	6527	6665	8915	8915					0.054958324539938985
IYPGWSREE	9	Unmodified	_IYPGWSREE_					0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.77218814885	2	568.772188	1135.52982	1.6932	0.00096302	-8.9529	-0.0050922	-7.2598	-0.0041292	569.2677433563255	37.888	0.096157	37.892	37.892	37.988	0.0034256	1209	31	0.892844	0.01839298	0.8913246	361.95847	0	7.4565125						65	5	2	NaN	NaN	NaN	0.47587	1	13819	13819		10.605	0	1	4359.8	+		11242	9598	6528	6666	8916	8916					-0.03252035424770838
IYPGWSREE	9	Unmodified						0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.772188	1135.52982	1.6932	0.00096302	-8.9529	-0.0050922	-7.2598	-0.0041292	569.2677433563255	37.888	0.096157	37.892	37.892	37.988	0.0034256	1209	31	0.892844	0.01839298	0.8913246	361.95847		7.4565125	-0.011581	-0.0015767	0.0010796	NaN	10.605	65	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4359.8	+		11243	9598	6528	6666							-0.03252035424770838
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENST00000454078.1_1_6:71318605-71318935:-|nuORF;ENSG00000102172|ENST00000404933|SMS	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.8131277168001	2	512.813128	1023.6117	1.8045	0.00092539	-1.4298	-0.0007332	0.37478	0.00019219	512.8125245280257	27.253	0.19304	27.253	27.157	27.35	0	1203	91	0.8965218	0.0552029	0.8965218	363.9257	0	22.408539						440	9	4	NaN	NaN	NaN	0.10053	1	9536	9536		35.745	20.732	1	71168			11244	1367	6529	6667	8917	8917					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENST00000454078.1_1_6:71318605-71318935:-|nuORF;ENSG00000102172|ENST00000404933|SMS	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENST00000454078.1_1_6:71318605-71318935:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.8131277168001	2	512.813128	1023.6117	0.98859	0.00050696	-0.85225	-0.00043705	0.13634	6.9918E-05	512.8127605321553	27.301	0.21722	27.291	27.194	27.411	-0.010126	1203	85	0.8965218	0.05152273	0.89500237	363.9257	0	20.914642						473	10	3	NaN	NaN	NaN	0.10053	1	9357	9357		35.745	7.884	1	71840			11245	1367	6529	6667	8918	8918					0.10084111724984268
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5764454503002	1	960.576445	959.569169	1.0648	0.0010228	0.20703	0.00019887	1.2718	0.0012217	960.5767804428361	31.983	0.21724	31.983	31.887	32.104	0	201	67	1.4997677	0.039039016	1.4997677	304.67474	0	7.9306946						332	10	3	NaN	NaN	NaN	0.032417	1	7336	7336		55.947	3.1891	1	49621			11246	2544	6530	6668	8919	8919					0.087767165967648
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5764454503002	1	960.576445	959.569169	0.84802	0.00081459	0.63752	0.00061239	1.4855	0.001427	960.5766887869022	31.982	0.2172	31.979	31.882	32.099	-0.0037594	198	76	1.5015416	0.04436016	1.5000222	305.03513	0	9.011688						318	10	3	NaN	NaN	NaN	0.0031782	1	7187	7187		107.47	42.92	1	47756			11247	2544	6530	6668	8920	8920					0.087767165967648
IYPNQLLM	8	Unmodified	_IYPNQLLM_					0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.2676957579	2	496.267696	990.520839	1.1383	0.0005649	6.3812	0.0031668	7.5195	0.0037317	496.27073786679176	15.244	0.26394	15.232	15.184	15.448	-0.012201	1257	46	0.86339295	0.027632773	0.8618735	350.63293	0	11.221954						287	12	3	NaN	NaN	NaN	0.40747	1	8066	8066		36.036	2.338	1	58975	+		11248	12422	6531	6669	8921	8921					0.025198996852054734
IYPNQLLM	8	Unmodified	_IYPNQLLM_					0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	331.1808893274667	3	331.180889	990.520839	1.8217	0.00060332	7.5475	0.0024996	9.3692	0.0031029	331.1836122185708	15.268	0.16797	15.256	15.184	15.352	-0.012202	1521	37	0.70049703	0.022316813	0.6989776	426.71286	0	13.594482						111	8	2	NaN	NaN	NaN	0.77489	1	8068	8068		17.799	7.194	1	10156	+		11249	12422	6531	6669	8922	8922					0.025198996852054734
IYPNQLLM	8	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.267696	990.520839	1.7011	0.00084421	5.5737	0.0027661	7.2749	0.0036103	496.2705353127507	15.15	0.2162	15.15	15.126	15.342	0	1254	43	0.8652351	0.025789201	0.8652351	351.38107		10.473267	-0.041232	-0.00033466	0.0016808	NaN	36.036	256	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62934	+		11250	12422	6531	6669							0.025198996852054734
IYPNQLLM	8	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	331.180889	990.520839	1.6563	0.00054855	6.1373	0.0020325	7.7936	0.0025811	331.1830801845916	15.15	0.048054	15.15	15.126	15.174	0	1518	37	0.7023569	0.022316813	0.7023569	427.8458		13.594452	-0.053235	-0.00039911	0.0016896	NaN	17.799	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6976.5	+		11251	12422	6531	6669							0.025198996852054734
IYPNQLLM	8	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.267696	990.520839	1.1383	0.0005649	6.3812	0.0031668	7.5195	0.0037317	496.27073786679176	15.244	0.26394	15.232	15.184	15.448	-0.012201	1257	46	0.86339295	0.027632773	0.8618735	350.63293		11.221954	0.041232	0.00046675	-0.0016808	NaN	36.036	287	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58975	+		11252	12422	6531	6669							0.025198996852054734
IYPNQLLM	8	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	331.180889	990.520839	1.8217	0.00060332	7.5475	0.0024996	9.3692	0.0031029	331.1836122185708	15.268	0.16797	15.256	15.184	15.352	-0.012202	1521	37	0.70049703	0.022316813	0.6989776	426.71286		13.594482	0.053235	0.001002	-0.0016896	NaN	17.799	111	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10156	+		11253	12422	6531	6669							0.025198996852054734
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3631817043502	2	613.363182	1224.71181	0.57685	0.00035382	-1.6879	-0.0010353	-1.1111	-0.00068148	613.3621988404461	34.154	0.31371	34.153	34.008	34.322	-0.0012474	1149	97	0.92958635	0.058686316	0.9280669	376.52438	0	23.7706						364	14	2	NaN	NaN	NaN	0.44296	1	16421	16421		20.513	1.395	1	35790			11254	2059	6532	6670	8923	8923					0.10844304268152882
IYPPINVLPSL	11	Unmodified						0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.363182	1224.71181	0.62629	0.00038414	-0.82442	-0.00050567	-0.19813	-0.00012152	613.3624865853845	34.179	0.19299	34.179	34.083	34.276	0	1098	31	0.960755	0.0183177	0.960755	389.14908		7.4194946	0.013278	0.00054785	0.016344	NaN	20.513	96	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6865			11255	2059	6532	6670							0.10844304268152882
IYPPKLHQF	9	Unmodified	_IYPPKLHQF_					0	0	0		chr19:29817541-29821722|113|10.1|0.35|4.86|+|0|CCNE1,CCNE1|1;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	chr19:29817541-29821722|113|10.1|0.35|4.86|+|0|CCNE1,CCNE1|1	chr19:29817541-29821722|113|10.1|0.35|4.86|+|0|CCNE1,CCNE1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.55008153229994	3	381.550082	1141.62842	2.1378	0.00081567	-2.3999	-0.00091569	-0.26213	-0.00010002	381.54904161885224	18.46	0.26385	18.46	18.292	18.556	0	1467	34	0.7339432	0.020420492	0.7339432	446.27692	0	12.416748						176	12	2	NaN	NaN	NaN	0.20577	1	14530	14530		16.858	9.0544	1	24189			11256	134	6533	6671	8924	8924					0.0632661261092835
IYPPLLGALSF	11	Unmodified	_IYPPLLGALSF_					0	0	0		ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.8446248104501	2	595.844625	1189.6747	0.47946	0.00028568	-0.69505	-0.00041414	-0.2156	-0.00012846	595.844451732497	38.396	0.26431	38.396	38.299	38.564	0	1185	67	0.90755045	0.04042095	0.90755045	367.71948	0	16.377655						512	12	4	NaN	NaN	NaN	0.10183	1	16152	16152		39.459	28.288	1	66880			11257	6732	6534	6672	8925	8925					0.08744632722391543
IYPPLLGALSF	11	Unmodified	_IYPPLLGALSF_					0	0	0		ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	ENST00000380338.8_1_9:20622330-20622507:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.8446248104501	2	595.844625	1189.6747	1.1345	0.000676	-0.68261	-0.00040673	0.45191	0.00026927	595.8443104028067	38.393	0.26442	38.397	38.277	38.542	0.0040283	1185	61	0.90755045	0.03674233	0.906031	367.71948	0	14.8871765						467	12	3	NaN	NaN	NaN	0.0023424	1	15539	15539		76.739	50.624	1	66395			11258	6732	6534	6672	8926	8926					0.08744632722391543
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213|p.E3844K|1|0.17|ENSG00000173821|chr17:80363276-80363276|G/A|missense_variant	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.3056668254501	2	535.305667	1068.59678	2.0632	0.0011044	-3.2956	-0.0017641	-1.2324	-0.00065971	535.3039637687651	23.658	0.12053	23.658	23.61	23.73	0	1242	49	0.87260187	0.029451072	0.87260187	354.01794	0	11.948425						174	6	3	NaN	NaN	NaN	0.18779	1	11508	11508		26.115	13.112	1	33463			11259	13662	6535	6673	8927	8927					0.06522619856991696
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213|p.E3844K|1|0.17|ENSG00000173821|chr17:80363276-80363276|G/A|missense_variant	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.3056668254501	2	535.305667	1068.59678	1.3811	0.00073931	-2.4714	-0.001323	-1.0904	-0.00058367	535.3049962948402	23.682	0.1445	23.669	23.621	23.765	-0.013048	1239	49	0.87444305	0.029451072	0.8729236	354.76492	0	11.948395						166	7	4	NaN	NaN	NaN	0.16171	1	11226	11226		27.789	18.043	1	31792			11260	13662	6535	6673	8928	8928					0.06522619856991696
IYPSIFHVL	9	Unmodified	_IYPSIFHVL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.8105850278502	2	544.810585	1087.60662	1.2008	0.00065421	-1.3999	-0.00076267	-0.19909	-0.00010847	544.8103740527904	29.449	0.14486	29.449	29.377	29.522	0	1233	46	0.87812483	0.027614892	0.87812483	356.17938	0	11.200958						133	7	2	NaN	NaN	NaN	0.53206	1	12293	12293		8.2903	2.0401	1	10929			11261	5059	6536	6674	8929	8929					0.06631807862390815
IYPSNMQTMLL	11	Oxidation (M)	_IYPSNMQTM(Oxidation (M))LL_		IYPSNMQTM(1)LL		IYPSNM(-33)QTM(33)LL	0	0	1		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.82524881405	2	663.825249	1325.63594	1.6991	0.0011279	-2.6919	-0.001787	-0.99286	-0.00065908	663.8236868378921	26.891	0.62787	26.891	26.746	27.374	0	1092	67	0.9644182	0.040294707	0.9644182	390.3012	0	16.307312						756	27	3	NaN	NaN	NaN	0.030127	1	19182	19182		56.466	22.012	2	231630			11262	1670	6537	6675	8930	8930		186;187			-0.01384783965954739
IYPSNMQTMLL	11	Oxidation (M)	_IYPSNMQTM(Oxidation (M))LL_		IYPSNM(0.007)QTM(0.993)LL		IYPSNM(-22)QTM(22)LL	0	0	1		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.82524881405	2	663.825249	1325.63594	1.9156	0.0012716	-2.6178	-0.0017378	-0.70224	-0.00046616	663.8235960525673	26.915	0.4103	26.904	26.759	27.17	-0.010645	1089	73	0.96624947	0.043962598	0.96473	391.04233	0	17.791718						765	18	4	NaN	NaN	NaN	0.048526	1	18326	18326		50.211	21.316	2	202550			11263	1670	6537	6675	8931	8931		186;187			-0.01384783965954739
IYPSNMQTMLL	11	2 Oxidation (M)	_IYPSNM(Oxidation (M))QTM(Oxidation (M))LL_		IYPSNM(1)QTM(1)LL		IYPSNM(53)QTM(53)LL	0	0	2		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8227061251001	2	671.822706	1341.63086	1.4997	0.0010075	-2.898	-0.0019469	-1.3983	-0.00093938	671.8214367554135	24.14	0.38608	24.14	23.995	24.381	0	1095	91	0.9625867	0.054947257	0.9625867	389.5121	0	22.234497						849	17	6	NaN	NaN	NaN	0.036982	1	19432	19432		53.14	32.692	1	152250			11264	1670	6537	6676	8932	8932		186;187			-0.0262908782856357
IYPSNMQTMLL	11	2 Oxidation (M)	_IYPSNM(Oxidation (M))QTM(Oxidation (M))LL_		IYPSNM(1)QTM(1)LL		IYPSNM(44)QTM(44)LL	0	0	2		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8227061251001	2	671.822706	1341.63086	1.4922	0.0010025	-2.6117	-0.0017546	-1.1195	-0.00075209	671.8213910385635	24.164	0.48261	24.151	23.982	24.465	-0.012749	1095	73	0.9625867	0.043962598	0.96106726	389.5121	0	17.78952						900	21	4	NaN	NaN	NaN	0.073891	1	18566	18566		43.776	17.661	1	163420			11265	1670	6537	6676	8933	8933		186;187			-0.0262908782856357
IYPSNMQTMLL	11	Unmodified	_IYPSNMQTMLL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8277915030001	2	655.827792	1309.64103	0.88468	0.0005802	-3.3306	-0.0021843	-2.4459	-0.0016041	655.8261235938468	30.269	0.26543	30.263	30.166	30.431	-0.0064106	1101	70	0.95892316	0.042142153	0.9574037	388.12628	0	17.057098						594	12	5	NaN	NaN	NaN	0.16721	1	18096	18096		43.776	23.327	1	110340			11266	1670	6537	6677	8934	8934					-0.00140480103345908
IYPSPTGVLI	10	Unmodified	_IYPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.6084738602	1	1059.60847	1058.6012	1.8227	0.0019313	0.50105	0.00053091	2.3237	0.0024622	1059.6090688676006	29.377	0.14475	29.377	29.329	29.474	0	105	91	1.5564433	0.053060412	1.5564433	315.76935	0	10.764832						356	7	4	NaN	NaN	NaN	0.033206	1	11043	11043		58.235	29.34	1	71078			11267	4933	6538	6678	8935	8935					0.07424084279909948
IYPSPTGVLI	10	Unmodified	_IYPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.6084738602	1	1059.60847	1058.6012	1.4023	0.0014858	0.19148	0.00020289	1.5937	0.0016887	1059.6088943512468	29.376	0.14478	29.368	29.32	29.465	-0.0077229	102	91	1.5582114	0.053060412	1.556692	316.12802	0	10.764832						342	7	4	NaN	NaN	NaN	0.040041	1	10806	10806		55.413	27.624	1	70530			11268	4933	6538	6678	8936	8936					0.07424084279909948
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1131.5720883539	1	1131.57209	1130.56481	2.2079	0.0024984	-2.0288	-0.0022957	0.17909	0.00020266	1131.568990053487	27.833	0.072376	27.833	27.808	27.881	0	69	85	1.5776473	0.049449682	1.5776473	319.80893	0	10.024078						204	4	3	NaN	NaN	NaN	0.024221	1	14098	14098		66.656	36.046	1	19654			11269	5168	6539	6679	8937	8937					0.004752073831923553
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1131.5720883539	1	1131.57209	1130.56481	0.83294	0.00094254	-1.1209	-0.0012684	-0.288	-0.00032589	1131.5694735043553	27.856	0.096586	27.846	27.822	27.919	-0.009552	81	79	1.5705823	0.045932055	1.5690628	318.37677	0	9.311005						155	5	3	NaN	NaN	NaN	0.01966	1	13645	13645		72.428	22.596	1	12659			11270	5168	6539	6679	8938	8938					0.004752073831923553
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.80823930415	2	583.808239	1165.60193	2.2351	0.0013048	-2.3816	-0.0013904	-0.14656	-8.5561E-05	583.8075020701474	25.298	0.24131	25.298	25.202	25.443	0	1203	64	0.8965218	0.038602352	0.8965218	363.3369	0	15.644531						275	11	3	NaN	NaN	NaN	0.1159	1	15326	15326		43.776	17.661	1	64161			11271	4267	6540	6680	8939	8939					0.02574878928930957
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.80823930415	2	583.808239	1165.60193	1.9655	0.0011475	-1.224	-0.00071459	0.74145	0.00043286	583.8074471130811	25.322	0.33776	25.31	25.165	25.503	-0.012011	1206	70	0.894683	0.042274177	0.89316356	362.59167	0	17.13263						299	15	2	NaN	NaN	NaN	0.20007	1	14798	14798		35.523	15.01	1	75376			11272	4267	6540	6680	8940	8940					0.02574878928930957
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.3371639191	2	630.337164	1258.65977	1.876	0.0011825	-1.7588	-0.0011087	0.11722	7.3886E-05	630.3361500457443	21.585	0.21683	21.585	21.537	21.754	0	1137	67	0.9369253	0.040364265	0.9369253	379.38287	0	16.344421						436	10	5	NaN	NaN	NaN	0.0036584	1	17973	17973		80.442	47.016	1	119380			11273	1871	6541	6681	8941	8941					0.04079140854355501
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.3371639191	2	630.337164	1258.65977	1.6024	0.0010101	-1.8766	-0.0011829	-0.2742	-0.00017284	630.3361660539728	21.609	0.21669	21.595	21.547	21.764	-0.013897	1137	70	0.9369253	0.04220128	0.93540585	379.38287	0	17.088287						422	10	5	NaN	NaN	NaN	5.2862E-09	1	17202	17202		138.61	90.608	1	119340			11274	1871	6541	6681	8942	8942					0.04079140854355501
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.5509589813	1	1023.55096	1022.54368	2.307	0.0023613	-2.5859	-0.0026468	-0.27892	-0.00028549	1023.5482967914908	29.618	0.24129	29.618	29.522	29.763	0	162	79	1.5228153	0.046073437	1.5228153	309.08707	0	9.3515625						417	11	3	NaN	NaN	NaN	0.019103	1	9463	9463		73.133	26.093	1	63470			11275	3846	6542	6682	8943	8943					0.03331242074318652
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.5509589813	1	1023.55096	1022.54368	1.3766	0.001409	-2.4784	-0.0025368	-1.1019	-0.0011278	1023.5483440909549	29.618	0.24128	29.61	29.538	29.779	-0.0070648	162	88	1.5228153	0.05138147	1.5212959	309.08707	0	10.428925						438	11	3	NaN	NaN	NaN	0.011206	1	9276	9276		89.256	36.632	1	61008			11276	3846	6542	6682	8944	8944					0.03331242074318652
IYPYIRTLL	9	Unmodified	_IYPYIRTLL_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;BCL2L13-VPS8|1|fusion	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.3447919859501	2	576.344792	1150.67503	0.95592	0.00055094	-3.1434	-0.0018117	-2.1875	-0.0012607	576.3419460112499	27.711	0.19302	27.702	27.629	27.822	-0.009552	1158	79	0.92408	0.047754705	0.9225606	374.56235	0	19.35669						220	9	3	NaN	NaN	NaN	0.40649	1	14338	14338		13.463	0.46021	1	19838			11277	3935	6543	6683	8945	8945					0.1057205244223951
IYPYIRTLL	9	Unmodified						0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;BCL2L13-VPS8|1|fusion	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.344792	1150.67503	1.5796	0.0009104	-3.6551	-0.0021066	-2.0755	-0.0011962	576.3423052469873	27.664	0.16889	27.664	27.591	27.76	0	1158	73	0.92408	0.04408604	0.92408	374.56235		17.869629	-0.018943	-0.00032079	0.00075972	NaN	13.463	251	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22873			11278	3935	6543	6683							0.1057205244223951
IYPYVYEKKDN	11	Unmodified	_IYPYVYEKKDN_					0	0	0		STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant;STEAP4|p.A396Pfs*25|1|0.29|ENSG00000127954|chr7:88279586-88279592|TGTGGGC/-|frameshift_variant;ENSG00000127954|ENST00000380079|STEAP4	STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3613672969	2	716.361367	1430.70818	2.2395	0.0016043	0.08788	6.2954E-05	2.3273	0.0016672	716.3609610811396	23.079	0.024088	23.065	23.041	23.065	-0.013294	1023	25	1.0064877	0.014616311	1.0049683	407.01804	0	5.9107666						31	2	2	NaN	NaN	NaN	0.71564	1	19317	19317		6.4299	1.7009	1	2928.7			11279	2551	6544	6684	8946	8946					0.010055897035954331
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.2454978072667	3	466.245498	1395.71466	1.6097	0.0007505	-1.4896	-0.00069451	0.12008	5.5987E-05	466.244876405386	18.077	0.1199	18.077	18.053	18.173	0	1455	46	0.7413668	0.027831018	0.7413668	449.8117	0	16.885986						146	6	4	NaN	NaN	NaN	0.47632	1	20028	20028		19.32	8.4587	1	21965			11280	2773	6545	6685	8947	8947					0.03263527655008147
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.8646084776001	2	698.864608	1395.71466	1.6919	0.0011824	-0.1812	-0.00012664	1.5107	0.0010558	698.8645647644553	18.077	0.071926	18.077	18.053	18.125	0	1014	55	1.0119673	0.032883227	1.0119673	409.3322	0	13.300964						75	4	2	NaN	NaN	NaN	0.19446	1	20030	20030		33.567	22.397	1	6014.4			11281	2773	6545	6685	8948	8948					0.03263527655008147
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.2454978072667	3	466.245498	1395.71466	1.1725	0.00054665	-1.1153	-0.00052002	0.057127	2.6635E-05	466.2448941315433	18.146	0.11998	18.132	18.108	18.228	-0.013948	1452	61	0.74322224	0.037093878	0.7417028	450.93744	0	22.506104						193	6	4	NaN	NaN	NaN	0.51168	1	19090	19090		18.055	5.7485	1	28417			11282	2773	6545	6685	8949	8949					0.03263527655008147
IYQDRDQFAKL	11	Unmodified	_IYQDRDQFAKL_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.8646084776001	2	698.864608	1395.71466	1.8583	0.0012987	-0.16758	-0.00011711	1.6907	0.0011816	698.8636020534205	18.146	0.072029	18.132	18.108	18.18	-0.013948	1014	43	1.0119673	0.025567532	1.0104479	409.3322	0	10.341858						78	4	2	NaN	NaN	NaN	0.25875	1	19091	19091		29.706	16.703	1	6506.7			11283	2773	6545	6685	8950	8950					0.03263527655008147
IYQDSFEQRF	10	Unmodified	_IYQDSFEQRF_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.8145842798	2	666.814584	1331.61462	1.4258	0.00095071	-0.90848	-0.00060579	0.51727	0.00034493	666.8140706404915	21.103	0.21666	21.103	20.983	21.2	0	1098	64	0.960755	0.038485885	0.960755	388.80072	0	15.574585						227	10	4	NaN	NaN	NaN	0.022455	1	19276	19276		66.544	28.413	1	24433			11284	3983	6546	6686	8951	8951					-0.03792709678828032
IYQDSFEQRF	10	Unmodified	_IYQDSFEQRF_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.8145842798	2	666.814584	1331.61462	1.3463	0.00089775	-0.61285	-0.00040866	0.73348	0.00048909	666.8142418413097	21.103	0.16855	21.089	21.065	21.234	-0.014004	1101	55	0.95892316	0.032982588	0.9574037	388.0594	0	13.347473						184	8	4	NaN	NaN	NaN	0.43212	1	18420	18420		27.046	4.9201	1	23376			11285	3983	6546	6686	8952	8952					-0.03792709678828032
IYQDVTLKW	9	Unmodified	_IYQDVTLKW_					0	0	0		nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.3162315117501	2	583.316232	1164.61791	1.6472	0.00096084	-2.9069	-0.0016957	-1.2597	-0.00073482	583.3145388372363	24.43	0.096487	24.43	24.406	24.502	0	1197	73	0.9001988	0.044100344	0.9001988	364.83072	0	17.872894						155	5	4	NaN	NaN	NaN	0.028404	1	15306	15306		61.199	24.964	1	59560			11286	2323	6547	6687	8953	8953					0.042185851658587126
IYQEIILANHF	11	Unmodified	_IYQEIILANHF_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8666198503	2	680.86662	1359.71869	1.8948	0.0012901	-3.8359	-0.0026118	-1.9412	-0.0013217	680.8642327747002	26.408	0.096548	26.408	26.384	26.481	0	1107	91	0.9552588	0.054923594	0.9552588	386.49445	0	22.221893						178	5	4	NaN	NaN	NaN	2.3748E-09	1	19679	19679		103.78	47.826	1	24684			11287	2924	6548	6688	8954	8954					0.05321617148706537
IYQEIILANHF	11	Unmodified	_IYQEIILANHF_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8666198503	2	680.86662	1359.71869	1.4405	0.00098077	-3.2917	-0.0022412	-1.8513	-0.0012605	680.8640100685408	26.408	0.096535	26.397	26.373	26.469	-0.011137	1107	82	0.9552588	0.04943925	0.9537394	386.49442	0	20.00293						209	5	3	NaN	NaN	NaN	0.030127	1	18779	18779		56.466	26.759	1	27090			11288	2924	6548	6688	8955	8955					0.05321617148706537
IYQEVWNLF	9	Unmodified	_IYQEVWNLF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.30840647965	2	606.308406	1210.60226	1.4147	0.00085775	-2.0982	-0.0012722	-0.68352	-0.00041442	606.3070092861209	34.638	0.3136	34.638	34.565	34.879	0	1200	49	0.89836043	0.029412925	0.89836043	363.92374	0	11.9151						384	14	4	NaN	NaN	NaN	0.032826	1	16736	16736		55.413	25.378	1	83654			11289	6074	6549	6689	8956	8956					0.005382986487802555
IYQEVWNLF	9	Unmodified	_IYQEVWNLF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.30840647965	2	606.308406	1210.60226	0.9165	0.00055568	-0.74807	-0.00045356	0.16843	0.00010212	606.3084486248516	34.636	0.24104	34.636	34.563	34.804	-0.0006485	1197	82	0.9001988	0.049615502	0.8986794	364.66846	0	20.099152						409	11	4	NaN	NaN	NaN	0.064504	1	16061	16061		40.957	17.839	1	81339			11290	6074	6549	6689	8957	8957					0.005382986487802555
IYQFIMDRF	9	Unmodified	_IYQFIMDRF_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.81025906435	2	616.810259	1231.60597	1.4529	0.00089614	-4.0763	-0.0025143	-2.6234	-0.0016181	616.8094563862483	27.808	0.28959	27.808	27.688	27.977	0	1158	109	0.92408	0.06607914	0.92408	374.27072	0	26.763367						608	13	5	NaN	NaN	NaN	0.011693	1	17313	17313		87.778	45.461	1	187540			11291	593;5035	6550	6690	8958	8958					-0.0005735484899105359
IYQFIMDRF	9	Unmodified	_IYQFIMDRF_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.81025906435	2	616.810259	1231.60597	0.94583	0.0005834	-4.1931	-0.0025864	-3.2473	-0.002003	616.809145806892	27.832	0.36201	27.822	27.677	28.039	-0.009552	1155	106	0.92591566	0.06424016	0.9243962	375.0142	0	26.018524						804	16	5	NaN	NaN	NaN	0.028404	1	16589	16589		61.199	16.566	1	217390			11292	593;5035	6550	6690	8959	8959					-0.0005735484899105359
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(51)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8077163754	2	624.807716	1247.60088	1.9356	0.0012094	-3.2835	-0.0020515	-1.3479	-0.00084215	624.8053130326817	25.081	0.31365	25.081	25.057	25.371	0	1149	88	0.92958635	0.053204536	0.92958635	376.4474	0	21.545837						494	14	3	NaN	NaN	NaN	0.040769	1	17713	17713		50.831	25.87	1	177830			11293	593;5035	6550	6691	8960	8960		59			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(66)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8077163754	2	624.807716	1247.60088	1.5149	0.00094649	-3.1671	-0.0019788	-1.6523	-0.0010324	624.805577557945	25.081	0.24121	25.069	25.045	25.286	-0.012011	1149	100	0.92958635	0.060549676	0.9280669	376.4474	0	24.520325						585	11	3	NaN	NaN	NaN	0.024359	1	16972	16972		66.481	25.021	1	190670			11294	593;5035	6550	6691	8961	8961		59			-0.01301658711622622
IYQGGIFEL	9	Unmodified	_IYQGGIFEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5458736034	1	1039.54587	1038.5386	1.3015	0.001353	0.07347	7.6376E-05	1.375	0.0014293	1039.545769483216	30.824	0.096472	30.818	30.746	30.842	-0.0057564	138	73	1.5369828	0.042484283	1.5354633	311.89868	0	8.621307						150	5	2	NaN	NaN	NaN	0.00065562	1	9939	9939		115.07	40.738	1	134970			11295	2303	6551	6692	8962	8962					0.020869382117098212
IYQGRLWAF	9	Unmodified	_IYQGRLWAF_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3112835196	2	577.311284	1152.60801	1.2324	0.00071145	0.66043	0.00038128	1.8928	0.0010927	577.311637768408	26.553	0.14478	26.542	26.494	26.639	-0.010645	1182	73	0.9093879	0.044100344	0.90786844	368.59976	0	17.875061						254	7	3	NaN	NaN	NaN	0.16171	1	14400	14400		27.789	7.3402	1	53585			11296	5940	6552	6693	8963	8963					0.037814419511278174
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.81332468205	2	555.813325	1109.6121	1.8351	0.00102	-2.2195	-0.0012336	-0.38442	-0.00021367	555.8123598574782	25.395	0.1448	25.395	25.371	25.515	0	1212	61	0.8910048	0.0367741	0.8910048	361.314	0	14.912384						233	7	4	NaN	NaN	NaN	0.026469	1	13277	13277		63.731	16.249	1	116510			11297	476;1938	6553	6694	8964	8964					0.061674866541807205
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.81332468205	2	555.813325	1109.6121	2.0023	0.0011129	-1.4612	-0.00081214	0.54118	0.00030079	555.8123634637265	25.419	0.1689	25.407	25.382	25.551	-0.012011	1212	58	0.8910048	0.034948587	0.88948536	361.314	0	14.172119						266	8	4	NaN	NaN	NaN	0.013696	1	12900	12900		81.699	23.5	1	121340			11298	476;1938	6553	6694	8965	8965					0.061674866541807205
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8085736551501	2	574.808574	1147.60259	1.8683	0.0010739	-1.7633	-0.0010136	0.10502	6.0368E-05	574.8077927167997	17.333	0.14382	17.333	17.285	17.429	0	1143	37	0.9332562	0.022016883	0.9332562	378.29376	0	8.9244995						164	7	3	NaN	NaN	NaN	0.03533	1	14729	14729		53.14	25.351	1	24790			11299	3268	6554	6695	8966	8966					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.5414745923	3	383.541475	1147.60259	1.8077	0.00069334	-1.5332	-0.00058806	0.2745	0.00010528	383.54130366499703	17.45	0.11997	17.436	17.388	17.508	-0.013569	1440	40	0.7506418	0.024107158	0.7491224	456.40225	0	14.657532						143	6	3	NaN	NaN	NaN	0.094712	1	14234	14234		31.675	11.162	1	13049			11300	3268	6554	6695	8967	8967					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8085736551501	2	574.808574	1147.60259	1.5231	0.00087549	-0.68761	-0.00039524	0.83549	0.00048025	574.8085376854397	17.45	0.19197	17.436	17.388	17.58	-0.013569	1143	37	0.9332562	0.022016883	0.93173677	378.29376	0	8.924469						191	9	3	NaN	NaN	NaN	0.054111	1	14235	14235		45.165	14.555	1	24664			11301	3268	6554	6695	8968	8968					0.03469718368660324
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;OBSCN-CASZ1|1|fusion;CASZ1|p.M554Ifs*6|1|0.69|ENSG00000130940|chr1:10655652-10655653|-/A|frameshift_variant;CASZ1|p.K505Tfs*60|1|0.46|ENSG00000130940|chr1:10655788-10655800|ATCACGTCCTGCT/-|frameshift_variant	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.34004095905	2	601.340041	1200.66553	1.9825	0.0011922	-1.6064	-0.00096601	0.37612	0.00022618	601.3389547422935	18.436	0.047945	18.436	18.412	18.46	0	1107	34	0.9552588	0.020157099	0.9552588	387.00925	0	8.166351						49	3	2	NaN	NaN	NaN	0.052553	1	16509	16509		52.624	10.84	1	5942			11302	7291	6555	6696	8969	8969					0.07322284156703063
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;OBSCN-CASZ1|1|fusion;CASZ1|p.M554Ifs*6|1|0.69|ENSG00000130940|chr1:10655652-10655653|-/A|frameshift_variant;CASZ1|p.K505Tfs*60|1|0.46|ENSG00000130940|chr1:10655788-10655800|ATCACGTCCTGCT/-|frameshift_variant	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.34004095905	2	601.340041	1200.66553	1.6095	0.00096787	-0.58526	-0.00035194	1.0243	0.00061593	601.3392180534538	18.578	0.14397	18.564	18.516	18.66	-0.01395	1110	31	0.95342636	0.01832366	0.9519069	386.26685	0	7.4235535						129	7	3	NaN	NaN	NaN	0.03533	1	15857	15857		61.271	28.818	1	8987.4			11303	7291	6555	6696	8970	8970					0.07322284156703063
IYQQLSRY	8	Unmodified	_IYQQLSRY_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;ENSG00000121671|ENST00000616080|CRY2;nc|ENSG00000121671|Q49AN0-2|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7850985588501	2	535.785099	1069.55564	1.2873	0.00068971	-3.1568	-0.0016914	-1.8696	-0.0010017	535.7832187314265	38.033	0.09613	38.036	37.988	38.084	0.0034256	1248	46	0.8689189	0.027626812	0.86739945	352.51974	0	11.20816						105	5	2	NaN	NaN	NaN	0.81251	1	11261	11261		7.5404	0	1	8681.4			11304	375	6556	6697	8971	8971					0.023648588175319674
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.5607576689333	3	382.560758	1144.66044	2.1892	0.00083749	-3.1602	-0.001209	-0.97099	-0.00037146	382.5595172968117	18.221	0.21585	18.221	18.149	18.364	0	1494	61	0.7172283	0.037166476	0.7172283	436.09958	0	22.59851						329	10	5	NaN	NaN	NaN	0.034172	1	14619	14619		54.991	27.944	1	77851			11305	4512	6557	6698	8972	8972					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.3374982701	2	573.337498	1144.66044	2.2599	0.0012957	-1.1925	-0.00068369	1.0674	0.000612	573.3370574190326	18.221	0.16782	18.221	18.173	18.34	0	1179	46	0.9112251	0.027555227	0.9112251	369.37476	0	11.16983						238	8	4	NaN	NaN	NaN	0.032409	1	14620	14620		55.958	32.841	1	46619			11306	4512	6557	6698	8973	8973					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.5607576689333	3	382.560758	1144.66044	2.2369	0.00085576	-2.0832	-0.00079697	0.15369	5.8795E-05	382.55989486404644	18.338	0.16804	18.324	18.252	18.42	-0.01395	1494	76	0.7172283	0.046440423	0.71570885	436.09958	0	28.237366						380	8	4	NaN	NaN	NaN	0.13196	1	14141	14141		23.353	6.1543	1	84634			11307	4512	6557	6698	8974	8974					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.3374982701	2	573.337498	1144.66044	1.8554	0.0010637	-1.5397	-0.00088275	0.31568	0.00018099	573.3364200866328	18.338	0.16804	18.324	18.252	18.42	-0.01395	1176	49	0.9130621	0.029390633	0.91154265	370.11942	0	11.913849						284	8	4	NaN	NaN	NaN	0.017558	1	14142	14142		75.089	36.958	1	55947			11308	4512	6557	6698	8975	8975					0.0938998029407685
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3249222111001	2	603.324922	1204.63529	1.4758	0.00089041	-1.3453	-0.00081167	0.13051	7.8742E-05	603.3241864432429	15.486	0.26424	15.486	15.438	15.702	0	1146	46	0.93142134	0.027525544	0.93142134	377.3377	0	11.151154						311	12	4	NaN	NaN	NaN	0.012495	1	16614	16614		85.344	42.35	1	49694			11309	3576	6558	6699	8976	8976					0.04115925491510097
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.3249222111001	2	603.324922	1204.63529	1.5072	0.00090934	-1.9679	-0.0011873	-0.4607	-0.00027795	603.3234685255452	15.676	0.26367	15.663	15.567	15.831	-0.012611	1146	43	0.93142134	0.025689125	0.9299019	377.3377	0	10.407196						332	12	4	NaN	NaN	NaN	0.011942	1	15949	15949		87.021	50.786	1	51326			11310	3576	6558	6699	8977	8977					0.04115925491510097
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.5523736296	3	402.552374	1204.63529	1.681	0.0006767	-1.2892	-0.00051897	0.39181	0.00015772	402.88601118242025	15.676	0.14393	15.663	15.567	15.711	-0.012611	1497	61	0.71537006	0.03715837	0.7138506	434.71228	0	22.58023						227	7	4	NaN	NaN	NaN	0.36492	1	15950	15950		28.896	18.034	1	30495			11311	3576	6558	6699	8978	8978					0.04115925491510097
IYQRWKDLL	9	Unmodified	_IYQRWKDLL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.8507728208501	2	617.850773	1233.68699	1.2335	0.00076211	-2.0262	-0.0012519	-0.79269	-0.00048976	617.84967238928	22.38	0.0963	22.38	22.38	22.477	0	1101	37	0.95892316	0.021986008	0.95892316	388.3756	0	8.904602						135	5	3	NaN	NaN	NaN	0.028404	1	17371	17371		61.199	21.74	1	15799			11312	5077	6559	6700	8979	8979					0.0794966918542741
IYQRWKDLL	9	Unmodified	_IYQRWKDLL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.8507728208501	2	617.850773	1233.68699	0.8266	0.00051072	-2.5367	-0.0015673	-1.7101	-0.0010566	617.8488584054032	22.597	0.28945	22.583	22.487	22.776	-0.01354	1104	55	0.9570911	0.03298968	0.95557165	387.6336	0	13.361237						215	13	3	NaN	NaN	NaN	0.25548	1	16644	16644		21.771	3.9721	1	16222			11313	5077	6559	6700	8980	8980					0.0794966918542741
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.31930551695	2	609.319306	1216.62406	1.296	0.0007897	-2.7321	-0.0016647	-1.4361	-0.00087504	609.3175890221461	21.657	0.16864	21.657	21.633	21.802	0	1140	67	0.93509084	0.04037732	0.93509084	378.782	0	16.355865						233	8	4	NaN	NaN	NaN	0.028569	1	16907	16907		60.984	22.714	1	35332			11314	277	6560	6701	8981	8981					0.024411033973592566
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.31930551695	2	609.319306	1216.62406	0.98602	0.0006008	-1.3642	-0.0008312	-0.37814	-0.00023041	609.3183995362598	21.681	0.1685	21.667	21.643	21.812	-0.013895	1140	52	0.93509084	0.031192243	0.9335714	378.782	0	12.635193						154	8	2	NaN	NaN	NaN	0.030545	1	16232	16232		58.398	23.101	1	35945			11315	277	6560	6701	8982	8982					0.024411033973592566
IYRFSFNYK	9	Unmodified	_IYRFSFNYK_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5	REV__ENSG00000106804|ENST00000223642|C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.21699095946667	3	413.216991	1236.62914	1.4766	0.00061014	8.0745	0.0033365	9.5511	0.0039467	413.55447484598	15.414	0.14422	15.414	15.342	15.486	0	1455	70	0.7413668	0.042674243	0.7413668	450.378	0	25.924438						183	7	3	NaN	NaN	NaN	0.13602	1	17448	17448		27.046	5.1961	1	16849	+		11316	9000	6561	6702	8983	8983					0.020294072599881474
IYRFSFNYK	9	Unmodified						0	0	0			REV__ENSG00000106804|ENST00000223642|C5	REV__ENSG00000106804|ENST00000223642|C5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	413.216991	1236.62914	1.4766	0.00061014	8.0745	0.0033365	9.5511	0.0039467	413.55447484598	15.414	0.14422	15.414	15.342	15.486	0	1455	70	0.7413668	0.042674243	0.7413668	450.378		25.924438	0	0	0	NaN	27.046	183	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16849	+		11317	9000	6561	6702							0.020294072599881474
IYRFTLMCCT	10	Unmodified	_IYRFTLMCCT_					0	0	0		ENST00000574285.2_1_16:9197349-9197592:+|nuORF	ENST00000574285.2_1_16:9197349-9197592:+|nuORF	ENST00000574285.2_1_16:9197349-9197592:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.7901547864501	2	625.790155	1249.56576	1.6255	0.0010172	-1.6534	-0.0010347	-0.027872	-1.7442E-05	625.7890578319227	25.491	0.16893	25.479	25.431	25.6	-0.012011	1185	91	0.90755045	0.05508375	0.906031	367.51733	0	22.306458						443	8	4	NaN	NaN	NaN	0.68669	1	17011	17011		8.962	2.0988	1	66665			11318	7655	6562	6703	8984	8984					-0.0490436083541681
IYRRLQRQ	8	Unmodified	_IYRRLQRQ_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.8385311128501	2	566.838531	1131.66251	1.4842	0.00084129	5.2815	0.0029937	6.7656	0.003835	566.8421689493889	31.839	0.048267	31.839	31.815	31.863	0	1194	28	0.902037	0.016543865	0.902037	365.70023	0	6.7071533						43	3	2	NaN	NaN	NaN	0.83211	1	14159	14159		4.9097	0.49665	1	2608.9			11319	6154	6563	6704	8985	8985					0.1019445382255526
IYRRLQRQ	8	Unmodified						0	0	0		ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.838531	1131.66251	0.85093	0.00048234	0.55062	0.00031211	1.4015	0.00079445	567.3397444693836	31.886	0.096518	31.881	31.833	31.93	-0.0044155	1191	34	0.90387505	0.020213723	0.9023556	366.4454		8.194977	0.021396	-0.0029387	0.00015929	NaN	4.9097	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5684.5			11320	6154	6563	6704							0.1019445382255526
IYRWFNISF	9	Unmodified	_IYRWFNISF_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.32439089485	2	623.324391	1244.63423	0.6668	0.00041563	-2.5152	-0.0015678	-1.8484	-0.0011522	623.3220180153224	31.38	0.14481	31.38	31.356	31.501	0	1143	67	0.9332562	0.040368617	0.9332562	377.9434	0	16.348175						206	7	3	NaN	NaN	NaN	0.35794	1	17631	17631		15.463	3.7238	1	22542			11321	4518	6564	6705	8986	8986					0.021697111225876142
IYRWFNISF	9	Unmodified						0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.324391	1244.63423	0.30393	0.00018945	-3.4647	-0.0021597	-3.1608	-0.0019702	623.321174720433	31.451	0.16892	31.447	31.399	31.568	-0.0044155	1143	70	0.9332562	0.04220581	0.93173677	377.9434		17.092224	0.033459	-0.00052505	-0.00075972	NaN	15.463	177	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17389			11322	4518	6564	6705							0.021697111225876142
IYRYGYGIT	9	Unmodified	_IYRYGYGIT_					0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2874740723	2	553.287474	1104.5604	0.97532	0.00053963	-10.804	-0.0059778	-9.8288	-0.0054381	553.2820204548299	31.234	0.048275	31.229	31.205	31.253	-0.0050716	1209	67	0.892844	0.040482104	0.8913246	362.08017	0	16.416931						111	3	4	NaN	NaN	NaN	0.51576	1	12694	12694		8.962	1.3744	1	13833	+		11323	10265	6565	6706	8987	8987					0.012297429602767807
IYRYGYGIT	9	Unmodified						0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.287474	1104.5604	0.4358	0.00024112	-9.5892	-0.0053056	-9.1534	-0.0050644	553.2829206624942	31.235	0.12062	31.235	31.211	31.332	0	1212	79	0.8910048	0.047852874	0.8910048	361.33432		19.406036	0.0030577	0.00074092	-0.00015988	NaN	8.962	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16703	+		11324	10265	6565	6706							0.012297429602767807
IYRYGYGIT	9	Unmodified						0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.287474	1104.5604	0.97532	0.00053963	-10.804	-0.0059778	-9.8288	-0.0054381	553.2820204548299	31.234	0.048275	31.229	31.205	31.253	-0.0050716	1209	67	0.892844	0.040482104	0.8913246	362.08017		16.416931	-0.0030577	-0.00060347	0.00015988	NaN	8.962	111	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13833	+		11325	10265	6565	6706							0.012297429602767807
IYRYMVVQV	9	Unmodified	_IYRYMVVQV_					0	0	0		ENST00000557069.1_1_14:36197566-36211729:-|nuORF;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1	ENST00000557069.1_1_14:36197566-36211729:-|nuORF	ENST00000557069.1_1_14:36197566-36211729:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8206267854	2	585.820627	1169.6267	2.007	0.0011758	-1.6038	-0.00093953	0.40324	0.00023623	585.8196671458236	28.243	0.12063	28.243	28.219	28.339	0	1215	61	0.8891654	0.0367741	0.8891654	360.34103	0	14.902985						217	6	3	NaN	NaN	NaN	0.55027	1	15484	15484		7.5404	0	1	28751			11326	4942	6566	6707	8988	8988					0.04867235530673497
IYSALYVEL	9	Unmodified	_IYSALYVEL_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5768393807998	1	1070.57684	1069.56956	1.2859	0.0013767	-1.5819	-0.0016935	-0.29596	-0.00031685	1070.5737133978503	30.801	0.096535	30.801	30.777	30.873	0	72	112	1.5758814	0.065402985	1.5758814	319.67072	0	13.26712						243	5	3	NaN	NaN	NaN	0.03623	1	11554	11554		52.758	16.722	1	28143			11327	4710	6567	6708	8989	8989					0.037560915259291505
IYSALYVEL	9	Unmodified	_IYSALYVEL_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5768393807998	1	1070.57684	1069.56956	0.94666	0.0010135	-2.9882	-0.0031991	-2.0416	-0.0021857	1070.5721093153575	30.776	0.048223	30.77	30.746	30.794	-0.0057545	69	121	1.5776473	0.070709705	1.5761279	320.02893	0	14.343628						178	3	2	NaN	NaN	NaN	0.094712	1	11265	11265		36.586	11.625	1	27348			11328	4710	6567	6708	8990	8990					0.037560915259291505
IYSESHRVHRM	11	Unmodified	_IYSESHRVHRM_					0	0	0		ENST00000420642.1_7:74765936-74789271:+|nuORF;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L;nc|ENSG00000274523|Q96I51-2|RCC1L	ENST00000420642.1_7:74765936-74789271:+|nuORF	ENST00000420642.1_7:74765936-74789271:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.8540521788001	2	707.854052	1413.69355	1.526	0.0010802	-11.417	-0.0080815	-9.8909	-0.0070013	707.8448282106305	22.814	0.096487	22.814	22.79	22.887	0	1047	37	0.99186665	0.021941006	0.99186665	401.15164	0	8.873871						73	5	3	NaN	NaN	NaN	0.50669	1	20173	20173		18.233	1.3752	1	4558.3			11329	6182	6568	6709	8991	8991					0.0032523907448194223
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5611893166002	1	1008.56119	1007.55391	1.6894	0.0017039	-0.775	-0.00078164	0.9144	0.00092223	1008.5602084977962	28.99	0.26546	28.982	28.934	29.2	-0.0077229	159	142	1.5245869	0.08335304	1.5230675	309.5079	0	16.92157						640	12	3	NaN	NaN	NaN	0.032417	1	8727	8727		55.947	3.1891	1	223260			11330	886	6569	6710	8992	8992					0.050438050089155695
IYSEVMEALKL	11	Unmodified	_IYSEVMEALKL_					0	0	0		ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3494140146	2	648.349414	1294.68428	1.5246	0.0009885	-3.0788	-0.0019961	-1.5541	-0.0010076	648.3469620211554	29.039	0.14478	29.039	29.015	29.16	0	1113	61	0.9515937	0.036643386	0.9515937	385.2061	0	14.833282						209	7	4	NaN	NaN	NaN	0.16151	1	18683	18683		33.907	9.5071	1	25714			11331	4612	6570	6711	8993	8993					0.0487203294558185
IYSEVMEALKL	11	Unmodified	_IYSEVMEALKL_					0	0	0		ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	ENST00000521046.1_1_8:52773369-52773723:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.3494140146	2	648.349414	1294.68428	1.1592	0.00075155	-2.76	-0.0017895	-1.6008	-0.0010379	648.3476855805483	29.062	0.19308	29.055	29.007	29.2	-0.0077209	1110	61	0.95342636	0.03664732	0.9519069	385.94797	0	14.834869						233	9	4	NaN	NaN	NaN	0.14916	1	17842	17842		35.056	11.97	1	26576			11332	4612	6570	6711	8994	8994					0.0487203294558185
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.3005814475501	2	581.300581	1160.58661	2.1536	0.0012519	-1.6373	-0.00095178	0.51627	0.00030011	581.2994715078124	27.712	0.26542	27.712	27.615	27.881	0	1170	64	0.91673553	0.038573205	0.91673553	371.5478	0	15.633484						430	12	4	NaN	NaN	NaN	0.0073225	1	15173	15173		97.85	45.226	1	254520			11333	5006	6571	6712	8995	8995					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.3005814475501	2	581.300581	1160.58661	1.6219	0.00094282	-1.6679	-0.00096956	-0.045997	-2.6738E-05	581.2999661464595	27.735	0.21723	27.726	27.677	27.895	-0.009552	1167	85	0.91857195	0.05144483	0.9170525	372.29205	0	20.850311						465	10	4	NaN	NaN	NaN	0.0073225	1	14660	14660		97.85	42.437	1	273270			11334	5006	6571	6712	8996	8996					0.012740121317847297
IYSINLLLI	9	Unmodified	_IYSINLLLI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.6605094307001	1	1061.66051	1060.65323	1.0954	0.0011629	0.95852	0.0010176	2.0539	0.0021805	1061.6616552324588	37.891	0.14417	37.891	37.843	37.987	0	57	61	1.5847093	0.03530991	1.5847093	321.49588	0	7.163452						225	7	3	NaN	NaN	NaN	0.0072287	1	11150	11150		98.041	15.081	1	25047			11335	1806	6572	6713	8997	8997					0.12533247693681915
IYSINLLLI	9	Unmodified	_IYSINLLLI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.6605094307001	1	1061.66051	1060.65323	1.5861	0.0016839	-1.0393	-0.0011034	0.54686	0.00058058	1061.6592839591758	37.913	0.072105	37.916	37.916	37.988	0.0034256	57	58	1.5847093	0.033539176	1.5831898	321.49588	0	6.804199						90	4	2	NaN	NaN	NaN	0.028349	1	10904	10904		61.271	5.7776	1	10674			11336	1806	6572	6713	8998	8998					0.12533247693681915
IYSINLLLI	9	Unmodified	_IYSINLLLI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.6605094307001	1	1061.66051	1060.65323	1.6946	0.0017991	0.092808	9.8531E-05	1.7874	0.0018976	1061.6606258165443	37.864	0.02401	37.868	37.844	37.868	0.0034256	60	49	1.582944	0.028244972	1.5814246	321.1378	0	5.7301636						54	2	2	NaN	NaN	NaN	0.028349	1	10905	10905		61.271	5.7776	1	6790.4			11337	1806	6572	6713	8999	8999					0.12533247693681915
IYSLHSTERS	10	Unmodified	_IYSLHSTERS_					0	0	0		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.8014769045501	2	596.801477	1191.5884	1.1622	0.0006936	-0.83527	-0.00049849	0.32693	0.00019511	597.3038518811617	31.62	0.048275	31.616	31.616	31.664	-0.0044155	1164	31	0.9204082	0.018357277	0.91888875	372.92227	0	7.437805						35	3	2	NaN	NaN	NaN	0.68669	1	15581	15581		8.962	2.0988	1	2600.1			11338	4365	6573	6714	9000	9000					0.00027021149730899197
IYSLMPLLL	9	Unmodified	_IYSLMPLLL_					0	0	0		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.6267664613001	1	1062.62677	1061.61949	1.0449	0.0011103	-0.24771	-0.00026323	0.79716	0.00084709	1062.6258027811375	39.839	0.12062	39.839	39.767	39.887	0	54	55	1.5864743	0.031772256	1.5864743	321.85022	0	6.4456787						126	6	2	NaN	NaN	NaN	0.01663	1	11203	11203		76.264	31.961	1	12398			11339	3758	6574	6715	9001	9001					0.09114502930265189
IYSLMPLLL	9	Unmodified	_IYSLMPLLL_					0	0	0		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.6267664613001	1	1062.62677	1061.61949	1.415	0.0015037	0.45175	0.00048004	1.8668	0.0019837	1062.6274202632164	39.789	0.09647	39.794	39.77	39.866	0.0053368	54	46	1.5864743	0.02647543	1.5849549	321.8502	0	5.3710938						90	5	2	NaN	NaN	NaN	0.0088919	1	10945	10945		94.648	50.345	1	7639.2			11340	3758	6574	6715	9002	9002					0.09114502930265189
IYSLMPLLL	9	Oxidation (M)	_IYSLM(Oxidation (M))PLLL_		IYSLM(1)PLLL		IYSLM(44)PLLL	0	0	1		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.6216810834	1	1078.62168	1077.6144	1.258	0.0013569	0.36928	0.00039831	1.6273	0.0017553	1078.621861847716	34.372	0.12052	34.372	34.3	34.421	0	57	70	1.5847093	0.040608644	1.5847093	321.4309	0	8.236755						160	6	3	NaN	NaN	NaN	0.056143	1	11878	11878		44.302	20.968	1	13673			11341	3758	6574	6716	9003	9003		415			0.07870199067633621
IYSLMPLLL	9	Oxidation (M)	_IYSLM(Oxidation (M))PLLL_		IYSLM(1)PLLL		IYSLM(83)PLLL	0	0	1		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.6216810834	1	1078.62168	1077.6144	1.6662	0.0017972	-0.15052	-0.00016236	1.5157	0.0016349	1078.6218631556383	34.323	0.096302	34.322	34.298	34.394	-0.0012474	60	58	1.582944	0.03354621	1.5814246	321.07285	0	6.804291						151	5	3	NaN	NaN	NaN	0.013314	1	11574	11574		82.858	43.94	1	10826			11342	3758	6574	6716	9004	9004		415			0.07870199067633621
IYSPLLFKYF	10	Unmodified	_IYSPLLFKYF_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8602748746501	2	645.860275	1289.706	1.5504	0.0010013	-2.1951	-0.0014177	-0.64474	-0.00041641	645.8586761209567	31.911	0.19309	31.911	31.863	32.056	0	1101	82	0.95892316	0.049487233	0.95892316	388.18887	0	20.033295						388	9	3	NaN	NaN	NaN	0.0001168	1	18596	18596		108.71	66.394	1	100160			11343	1739	6575	6717	9005	9005					0.07273205756473544
IYSPLLFKYF	10	Unmodified	_IYSPLLFKYF_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8602748746501	2	645.860275	1289.706	1.1944	0.00077139	-2.2932	-0.0014811	-1.0988	-0.00070966	645.8582537715503	31.934	0.26544	31.93	31.882	32.148	-0.0037613	1098	82	0.960755	0.04948193	0.9592356	388.93045	0	20.031128						490	12	4	NaN	NaN	NaN	0.24484	1	17768	17768		31.675	11.162	1	100990			11344	1739	6575	6717	9006	9006					0.07273205756473544
IYSPLLFKYFL	11	Unmodified	_IYSPLLFKYFL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.4023068648502	2	702.402307	1402.79006	1.0889	0.00076486	0.59657	0.00041903	1.6855	0.0011839	702.4026998043684	34.638	0.096539	34.638	34.614	34.71	0	1017	43	1.010141	0.025573134	1.010141	408.57324	0	10.343597						124	5	4	NaN	NaN	NaN	0.0099716	1	20091	20091		69.32	38.122	1	10606			11345	1739	6576	6718	9007	9007					0.10477736853385977
IYSPLLFKYFL	11	Unmodified	_IYSPLLFKYFL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.4023068648502	2	702.402307	1402.79006	0.9601	0.00067438	-0.014628	-1.0275E-05	0.94548	0.0006641	702.4024263804185	34.733	0.096367	34.732	34.684	34.78	-0.0006485	1014	64	1.0119673	0.038374126	1.0104479	409.31195	0	15.52124						128	5	3	NaN	NaN	NaN	0.11462	1	19143	19143		38.269	25.168	1	10862			11346	1739	6576	6718	9008	9008					0.10477736853385977
IYSQNKYICDQ	11	Unmodified	_IYSQNKYICDQ_					0	0	0		ENST00000525566.5_2_12:104742752-104742830:+|nuORF	ENST00000525566.5_2_12:104742752-104742830:+|nuORF	ENST00000525566.5_2_12:104742752-104742830:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8215520321501	2	687.821552	1373.62855	1.5237	0.001048	-6.9219	-0.004761	-5.3982	-0.003713	687.8171099807588	31.959	0.096558	31.959	31.911	32.008	0	1098	28	0.960755	0.016483307	0.960755	388.67856	0	6.668396						51	5	2	NaN	NaN	NaN	0.58035	1	19834	19834		15.311	6.3694	1	4106.2			11347	7423	6577	6719	9009	9009					-0.0433180024201647
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8060309662	2	612.806031	1223.59751	1.4553	0.00089181	-1.0115	-0.00061983	0.44382	0.00027198	612.80545917241	24.719	0.36192	24.719	24.623	24.985	0	1158	100	0.92408	0.060575783	0.92408	374.29788	0	24.536194						784	16	6	NaN	NaN	NaN	6.5392E-05	1	17061	17061		125.02	69.607	1	606260			11348	2303	6578	6720	9010	9010					-0.005345854939832861
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8060309662	2	612.806031	1223.59751	1.4164	0.000868	-0.98687	-0.00060476	0.42957	0.00026324	612.805534116026	24.743	0.36186	24.731	24.658	25.02	-0.012394	1158	79	0.92408	0.047739267	0.9225606	374.29788	0	19.336731						755	16	5	NaN	NaN	NaN	3.7692E-08	1	16370	16370		140.15	73.49	1	577800			11349	2303	6578	6720	9011	9011					-0.005345854939832861
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.5091537460999	1	1126.50915	1125.50188	2.1884	0.0024652	-0.43973	-0.00049536	1.7487	0.0019699	1126.5087591243403	30.511	0.19307	30.511	30.463	30.656	0	60	157	1.582944	0.09194219	1.582944	320.90005	0	18.638855						831	9	5	NaN	NaN	NaN	0.014046	1	13890	13890		80.639	49.078	1	185200			11350	6074	6579	6721	9012	9012					-0.05585358404869112
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.5091537460999	1	1126.50915	1125.50188	1.2261	0.0013812	0.5902	0.00066486	1.8163	0.0020461	1126.5096567154037	30.534	0.19304	30.529	30.456	30.649	-0.0057545	60	148	1.582944	0.08662403	1.5814246	320.90005	0	17.56073						709	9	4	NaN	NaN	NaN	0.01047	1	13464	13464		91.429	47.126	1	180180			11351	6074	6579	6721	9013	9013					-0.05585358404869112
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.5571246564999	3	397.557125	1189.64954	1.3451	0.00053477	-2.4949	-0.00099185	-1.1497	-0.00045709	397.5560590393099	19.228	0.14402	19.228	19.18	19.324	0	1434	55	0.75435036	0.03337723	0.75435036	458.46494	0	20.28543						241	7	4	NaN	NaN	NaN	0.013696	1	16150	16150		63.995	48.173	1	43048			11352	3655	6580	6722	9014	9014					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.83204875145	2	595.832049	1189.64954	1.2908	0.00076907	-0.73686	-0.00043905	0.55389	0.00033002	595.8313941018831	19.204	0.14402	19.204	19.18	19.324	0	1152	37	0.92775106	0.022023976	0.92775106	375.90442	0	8.923645						157	7	4	NaN	NaN	NaN	0.25548	1	16151	16151		21.771	2.6527	1	19701			11353	3655	6580	6722	9015	9015					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.83204875145	2	595.832049	1189.64954	1.1223	0.00066873	-1.7677	-0.0010533	-0.64536	-0.00038452	595.8318251336725	19.346	0.14417	19.332	19.284	19.428	-0.014141	1149	37	0.92958635	0.022023976	0.9280669	376.648	0	8.923645						167	7	3	NaN	NaN	NaN	0.16939	1	15537	15537		27.296	10.712	1	18516			11354	3655	6580	6722	9016	9016					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.5571246564999	3	397.557125	1189.64954	1.4358	0.00057083	-0.54821	-0.00021795	0.88764	0.00035289	397.5568457355256	19.346	0.24039	19.332	19.26	19.5	-0.014141	1431	49	0.75620437	0.02966547	0.7546849	459.5917	0	18.02951						281	11	4	NaN	NaN	NaN	0.032826	1	15538	15538		48.65	30.417	1	43676			11355	3655	6580	6722	9017	9017					0.06230577919791358
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000109787|P57682-2|KLF3	nc|ENSG00000109787|P57682-2|KLF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.82388936835	2	597.823889	1193.63323	1.6435	0.00098252	-3.8046	-0.0022745	-2.1611	-0.001292	597.8217018083824	22.959	0.096291	22.959	22.935	23.031	0	1191	67	0.90387505	0.04042095	0.90387505	366.21637	0	16.377045						185	5	3	NaN	NaN	NaN	0.1159	1	16269	16269		43.776	12.215	1	21913			11356	1733	6581	6723	9018	9018					0.044154519630410505
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3	nc|ENSG00000109787|P57682-2|KLF3	nc|ENSG00000109787|P57682-2|KLF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.82388936835	2	597.823889	1193.63323	1.1527	0.00068911	-2.0218	-0.0012087	-0.86911	-0.00051957	597.8231235183811	23.007	0.072266	22.993	22.969	23.041	-0.01354	1194	67	0.902037	0.04042524	0.9005176	365.47165	0	16.378815						163	4	3	NaN	NaN	NaN	0.38071	1	15641	15641		24.4	6.1667	1	18488			11357	1733	6581	6723	9019	9019					0.044154519630410505
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3031241365001	2	567.303124	1132.5917	1.7642	0.0010008	-0.82573	-0.00046844	0.93846	0.00053239	567.3026806853579	26.722	0.24184	26.722	26.65	26.891	0	1164	61	0.9204082	0.036726475	0.9204082	373.14453	0	14.889343						305	11	4	NaN	NaN	NaN	0.020004	1	14193	14193		71.993	44.204	1	54900			11358	314	6582	6724	9020	9020					0.030703159943641367
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3031241365001	2	567.303124	1132.5917	1.0295	0.00058403	0.26833	0.00015223	1.2978	0.00073625	567.3032817638132	26.746	0.12064	26.735	26.711	26.832	-0.010645	1164	64	0.9204082	0.038556516	0.91888875	373.14453	0	15.631287						200	6	3	NaN	NaN	NaN	0.043119	1	13743	13743		49.833	17.38	1	49952			11359	314	6582	6724	9021	9021					0.030703159943641367
IYSTWIWN	8	Unmodified	_IYSTWIWN_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7689171784001	2	541.768917	1081.52328	1.878	0.0010174	-0.96365	-0.00052208	0.91433	0.00049536	541.7685011796405	23.947	0.21707	23.947	23.899	24.116	0	1269	103	0.8560222	0.062610626	0.8560222	347.23868	0	25.397491						549	10	3	NaN	NaN	NaN	0.35353	1	12047	12047		38.918	0	1	223110	+		11360	8627	6583	6725	9022	9022					-0.014219285854778718
IYSVCLNALV	10	Unmodified	_IYSVCLNALV_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.79936002705	2	547.79936	1093.58417	1.5629	0.00085617	1.4929	0.00081781	3.0558	0.001674	547.8010835282296	24.285	0.048279	24.272	24.248	24.296	-0.012749	1233	37	0.87812483	0.022090733	0.8766054	356.15503	0	8.959686						42	3	2	NaN	NaN	NaN	0.63397	1	12242	12242		12.57	0	1	7234.7	+		11361	11115	6584	6726	9023	9023					0.04111840402447342
IYSVCLNALV	10	Unmodified						0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.79936	1093.58417	1.121	0.00061409	2.874	0.0015744	3.995	0.0021885	547.8032708889116	24.261	0.048231	24.261	24.237	24.285	0	1236	37	0.876284	0.022090733	0.876284	355.40842		8.959686	-0.0055461	0.00077022	-0.00016068	NaN	12.57	59	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6066.8	+		11362	11115	6584	6726							0.04111840402447342
IYSVCLNALV	10	Unmodified						0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.79936	1093.58417	1.5629	0.00085617	1.4929	0.00081781	3.0558	0.001674	547.8010835282296	24.285	0.048279	24.272	24.248	24.296	-0.012749	1233	37	0.87812483	0.022090733	0.8766054	356.15503		8.959686	0.0055461	-0.00074291	0.00016068	NaN	12.57	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7234.7	+		11363	11115	6584	6726							0.04111840402447342
IYSWFTRTF	9	Unmodified	_IYSWFTRTF_					0	0	0		ENST00000441290.6_1_7:114296499-114304492:+|nuORF;nc|ENSG00000128573|O15409-2|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	ENST00000441290.6_1_7:114296499-114304492:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8085736551501	2	610.808574	1219.60259	0.58994	0.00036034	0.31232	0.00019077	0.90225	0.0005511	610.8087670855142	27.977	0.12065	27.968	27.919	28.04	-0.0089798	1146	64	0.93142134	0.038535774	0.9299019	377.28525	0	15.609436						219	6	4	NaN	NaN	NaN	0.15381	1	16287	16287		28.296	11.437	1	28228			11364	2572	6585	6727	9024	9024					0.001577183686549688
IYSYGFATI	9	Unmodified	_IYSYGFATI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5193245019	1	1034.51932	1033.51205	1.828	0.0018911	2.58	0.0026691	4.408	0.0045602	1034.5185875226498	28.605	0.19307	28.605	28.556	28.75	0	114	118	1.5511382	0.069040656	1.5511382	314.7913	0	14.011261						561	9	3	NaN	NaN	NaN	0.018156	1	9924	9924		74.332	45.436	1	100970			11365	1050	6586	6728	9025	9025					-0.0033675067961667082
IYTDMGRFTI	10	Unmodified	_IYTDMGRFTI_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8051736864502	2	608.805174	1215.59579	1.5045	0.00091593	-0.59863	-0.00036445	0.90583	0.00055148	608.8054383270706	25.346	0.1689	25.346	25.25	25.419	0	1146	127	0.93142134	0.07715899	0.93142134	377.29916	0	31.255463						276	8	2	NaN	NaN	NaN	0.34981	1	16873	16873		25.681	7.8824	1	43233			11366	1536	6587	6729	9026	9026					-0.003379625741899872
IYTDMGRFTI	10	Unmodified	_IYTDMGRFTI_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.8051736864502	2	608.805174	1215.59579	1.3296	0.00080948	0.89771	0.00054653	2.2273	0.001356	608.8067211506102	25.37	0.12065	25.358	25.286	25.407	-0.012011	1143	67	0.9332562	0.040372968	0.93173677	378.04242	0	16.354248						167	6	2	NaN	NaN	NaN	0.59391	1	16205	16205		15.311	2.3081	1	33943			11367	1536	6587	6729	9027	9027					-0.003379625741899872
IYTDMGRFTI	10	Oxidation (M)	_IYTDM(Oxidation (M))GRFTI_		IYTDM(1)GRFTI		IYTDM(40)GRFTI	0	0	1		ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8026309975002	2	616.802631	1231.59071	0.70294	0.00043357	-3.5153	-0.0021683	-2.8124	-0.0017347	617.3017001070028	22.139	0.14472	22.125	22.101	22.246	-0.013731	1143	82	0.9332562	0.04955131	0.93173677	377.9873	0	20.069275						363	7	4	NaN	NaN	NaN	0.14791	1	16584	16584		40.006	12.217	1	49559			11368	1536	6587	6730	9028	9028		176			-0.015822664368215555
IYTDQAGQWRI	11	Unmodified	_IYTDQAGQWRI_					0	0	0		ENST00000547490.1_1_12:53700445-53700930:+|nuORF;nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	ENST00000547490.1_1_12:53700445-53700930:+|nuORF	ENST00000547490.1_1_12:53700445-53700930:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.84367607025	2	675.843676	1349.6728	1.6005	0.0010817	-1.0526	-0.0007114	0.54789	0.00037029	675.8433497540622	22.814	0.1929	22.814	22.766	22.959	0	1098	49	0.960755	0.02930522	0.960755	388.74728	0	11.857666						207	9	4	NaN	NaN	NaN	0.026113	1	19545	19545		58.769	40.97	1	29784			11369	3228	6588	6731	9029	9029					0.011949719664698932
IYTDQAGQWRI	11	Unmodified	_IYTDQAGQWRI_					0	0	0		ENST00000547490.1_1_12:53700445-53700930:+|nuORF;nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	ENST00000547490.1_1_12:53700445-53700930:+|nuORF	ENST00000547490.1_1_12:53700445-53700930:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.84367607025	2	675.843676	1349.6728	1.088	0.00073529	-2.1431	-0.0014484	-1.0552	-0.00071314	675.842500463141	22.814	0.1446	22.8	22.776	22.921	-0.01354	1098	46	0.960755	0.027478099	0.9592356	388.74728	0	11.118378						192	7	3	NaN	NaN	NaN	3.3034E-11	1	18666	18666		106.32	66.162	1	29845			11370	3228	6588	6731	9030	9030					0.011949719664698932
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7689171784	2	541.768917	1081.52328	1.8539	0.0010044	-1.151	-0.00062358	0.70289	0.0003808	541.7682177942246	23.971	0.26537	23.958	23.91	24.175	-0.01305	1269	112	0.8560222	0.06813884	0.85450274	347.23868	0	27.639954						557	12	3	NaN	NaN	NaN	0.025843	1	11730	11730		64.55	5.9508	1	211580			11371	1839	6589	6732	9031	9031					-0.014219285855006092
IYTFPHASF	9	Unmodified						0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.768917	1081.52328	1.878	0.0010174	-0.96365	-0.00052208	0.91433	0.00049536	541.7685011796405	23.947	0.21707	23.947	23.899	24.116	0	1269	103	0.8560222	0.062610626	0.8560222	347.23868		25.397491	-0.0054376	0.0001049	0.00075972	NaN	64.55	549	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223110			11372	1839	6589	6732							-0.014219285855006092
IYTFTATF	8	Unmodified	_IYTFTATF_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4822107141001	1	963.482211	962.474934	1.1381	0.0010966	0.32851	0.00031652	1.4666	0.0014131	963.4829950787981	29.038	0.12065	29.031	29.007	29.127	-0.0077229	198	70	1.5015416	0.04081571	1.5000222	305.0221	0	8.29126						178	6	3	NaN	NaN	NaN	0.09307	1	7244	7244		65.672	15.639	1	19422			11373	6042	6590	6733	9032	9032					-0.0078042222537533235
IYTFTATF	8	Unmodified						0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	963.482211	962.474934	1.3776	0.0013273	0.19596	0.0001888	1.5736	0.0015161	963.4827020016382	29.039	0.14478	29.039	29.015	29.16	0	201	55	1.4997677	0.03193426	1.4997677	304.6617		6.487091	0.0042677	-6.4386E-05	-0.0001273	NaN	65.672	157	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18579			11374	6042	6590	6733							-0.0078042222537533235
IYTHGLALL	9	Unmodified	_IYTHGLALL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.79493496364995	2	500.794935	999.575317	1.3481	0.00067514	-1.4877	-0.00074504	-0.13959	-6.9904E-05	500.7940141740604	25.081	0.12062	25.069	25.021	25.141	-0.012011	1257	43	0.86339295	0.025791943	0.8618735	350.58948	0	10.473114						143	6	4	NaN	NaN	NaN	0.49672	1	8408	8408		9.746	0.78402	1	21323			11375	4117	6591	6734	9033	9033					0.07551234828270026
IYTHGLALLGF	11	Unmodified	_IYTHGLALLGF_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.8398737835499	2	602.839874	1203.66519	1.3983	0.00084294	-1.6794	-0.0010124	-0.28115	-0.00016949	602.8390714185682	30.246	0.096518	30.246	30.222	30.318	0	1131	37	0.94059354	0.022005022	0.94059354	381.05704	0	8.914734						136	5	3	NaN	NaN	NaN	0.48069	1	16588	16588		19.164	6.8569	1	18164			11376	4117	6592	6735	9034	9034					0.07150864436812299
IYTIINSI	8	Unmodified	_IYTIINSI_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5400599440001	1	936.54006	935.532783	1.4787	0.0013849	0.44947	0.00042095	1.9282	0.0018059	936.5404506473013	29.28	0.14479	29.272	29.2	29.344	-0.0077229	255	79	1.4678029	0.046235085	1.4662834	298.28958	0	9.395966						225	7	3	NaN	NaN	NaN	0.084194	1	6603	6603		68.108	2.4363	1	24390			11377	2829	6593	6736	9035	9035					0.06243839700039189
IYTKIMDLI	9	Unmodified	_IYTKIMDLI_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.3173856047	2	555.317386	1108.62022	1.5303	0.00084978	-11.342	-0.0062986	-9.8121	-0.0054489	555.8097877486824	28.436	0.21723	28.436	28.412	28.629	0	1221	94	0.885486	0.057033777	0.885486	359.08005	0	23.128174						414	10	4	NaN	NaN	NaN	0.022185	1	13235	13235		69.233	32.646	1	82274			11378	4913	6594	6737	9036	9036					0.0702529757929824
IYTKIMDLI	9	Unmodified	_IYTKIMDLI_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.3173856047	2	555.317386	1108.62022	1.1773	0.00065378	-8.8899	-0.0049367	-7.7126	-0.0042829	555.3160115357928	28.459	0.14479	28.451	28.403	28.547	-0.0083504	1218	91	0.8873258	0.05519098	0.8858064	359.8261	0	22.38089						344	7	4	NaN	NaN	NaN	0.28943	1	12863	12863		19.592	5.1669	1	68388			11379	4913	6594	6737	9037	9037					0.0702529757929824
IYTKIMDLI	9	Oxidation (M)	_IYTKIM(Oxidation (M))DLI_		IYTKIM(1)DLI		IYTKIM(44)DLI	0	0	1		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.31484291575	2	563.314843	1124.61513	1.4083	0.00079334	-3.9197	-0.002208	-2.5113	-0.0014147	563.3137422943012	24.96	0.096504	24.948	24.948	25.044	-0.012394	1179	58	0.9112251	0.034907043	0.90970564	369.45312	0	14.152954						169	5	4	NaN	NaN	NaN	0.057383	1	13449	13449		43.776	14.88	1	30139			11380	4913	6594	6738	9038	9038		515			0.057809937166666714
IYTLVSGIR	9	Unmodified	_IYTLVSGIR_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.6040571843002	1	1021.60406	1020.59678	2.0934	0.0021386	-1.7102	-0.0017471	0.38319	0.00039147	1021.5976717744894	34.975	0.48235	34.975	34.71	35.192	0	99	148	1.5599792	0.08671594	1.5599792	316.63828	0	17.601257						1322	21	7	NaN	NaN	NaN	0.12945	1	9414	9414		31.561	4.8295	1	246990	+		11381	8558	6595	6739	9039	9039					0.08730619857010424
IYTLVSGIR	9	Unmodified						0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1021.60406	1020.59678	2.0934	0.0021386	-1.7102	-0.0017471	0.38319	0.00039147	1021.5976717744894	34.975	0.48235	34.975	34.71	35.192	0	99	148	1.5599792	0.08671594	1.5599792	316.63828		17.601257	0.061344	0.0017136	-0.0018915	NaN	31.561	1322	21	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246990	+		11382	8558	6595	6739							0.08730619857010424
IYTLVSGIR	9	Unmodified						0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1021.60406	1020.59678	1.5588	0.0015925	-4.1597	-0.0042496	-2.601	-0.0026572	1021.6001098726404	34.853	0.12047	34.853	34.732	34.853	-0.0006485	90	70	1.5652816	0.04064727	1.5637622	317.71454		8.250427	-0.061344	-0.00078893	0.0018915	NaN	31.561	202	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24076	+		11383	8558	6595	6739							0.08730619857010424
IYTNLNQKI	9	Unmodified	_IYTNLNQKI_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8138559983	2	553.813856	1105.61316	1.8867	0.0010449	-4.325	-0.0023952	-2.4383	-0.0013503	553.8105989811982	18.602	0.072002	18.588	18.588	18.66	-0.014059	1236	43	0.876284	0.025772452	0.8747646	355.36032	0	10.451538						96	4	3	NaN	NaN	NaN	0.14787	1	12736	12736		28.896	5.778	1	10054			11384	3461	6596	6740	9040	9040					0.06457701023077789
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.2871397213	2	580.28714	1158.55973	1.7925	0.0010402	0.69801	0.00040505	2.4905	0.0014452	580.2867143954343	28.725	0.14476	28.725	28.653	28.798	0	1203	88	0.8965218	0.053296506	0.8965218	363.36273	0	21.601227						242	7	4	NaN	NaN	NaN	0.055363	1	15092	15092		58.2	40.401	1	47954			11385	1401	6597	6741	9041	9041					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1159.567002976	1	1159.567	1158.55973	2.6385	0.0030595	0.28928	0.00033545	2.9277	0.0033949	1159.5660017736561	28.725	0.12067	28.725	28.677	28.798	0	69	70	1.5776473	0.040617228	1.5776473	319.71564	0	8.231232						235	6	3	NaN	NaN	NaN	0.0015839	1	15095	15095		136.74	91.572	1	25357			11386	1401	6597	6741	9042	9042					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1159.567002976	1	1159.567	1158.55973	1.8677	0.0021657	-0.36242	-0.00042024	1.5053	0.0017455	1159.565886561446	28.725	0.12065	28.716	28.692	28.813	-0.0083504	66	67	1.579413	0.038853288	1.5778936	320.0735	0	7.873749						184	6	3	NaN	NaN	NaN	0.0044139	1	14590	14590		128.29	69.695	1	19370			11387	1401	6597	6741	9043	9043					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2871397213	2	580.28714	1158.55973	1.2229	0.00070966	2.186	0.0012685	3.409	0.0019782	580.2880141258552	28.749	0.12065	28.74	28.668	28.789	-0.0083504	1206	82	0.894683	0.049631655	0.89316356	362.61743	0	20.115845						268	6	4	NaN	NaN	NaN	0.01564	1	14593	14593		97.85	72.889	1	43616			11388	1401	6597	6741	9044	9044					-0.013210964794325264
IYTRVTYYL	9	Unmodified	_IYTRVTYYL_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.32405654385	2	596.324057	1190.63356	1.5687	0.00093547	-5.1946	-0.0030977	-3.6259	-0.0021622	596.3203620045289	23.562	0.21688	23.562	23.489	23.706	0	1176	73	0.9130621	0.044066966	0.9130621	369.94928	0	17.854828						311	10	4	NaN	NaN	NaN	0.040769	1	16169	16169		50.831	23.535	1	49299			11389	8104	6598	6742	9045	9045					0.0458687168288634
IYTRVTYYL	9	Unmodified	_IYTRVTYYL_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.32405654385	2	596.324057	1190.63356	1.4177	0.00084539	-5.1511	-0.0030717	-3.7334	-0.0022263	596.319282740782	23.585	0.26516	23.572	23.548	23.813	-0.013048	1173	64	0.91489893	0.03856486	0.9133795	370.6935	0	15.625488						311	12	3	NaN	NaN	NaN	0.23499	1	15558	15558		23.086	7.9104	1	52315			11390	8104	6598	6742	9046	9046					0.0458687168288634
IYTSNHIWTLF	11	Unmodified	_IYTSNHIWTLF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.8587948182	2	697.858795	1393.70304	1.3897	0.00096983	-4.2076	-0.0029363	-2.8179	-0.0019665	697.855627256386	29.932	0.096508	29.932	29.884	29.98	0	1095	46	0.9625867	0.027469158	0.9625867	389.36368	0	11.111206						108	5	3	NaN	NaN	NaN	0.46872	1	20009	20009		19.592	0.4283	1	8899.4			11391	1141	6599	6743	9047	9047					0.021933306316441303
IYTSNHIWTLF	11	Unmodified	_IYTSNHIWTLF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.8587948182	2	697.858795	1393.70304	0.74018	0.00051654	-4.8481	-0.0033833	-4.108	-0.0028668	697.8561571848605	29.955	0.12063	29.949	29.901	30.021	-0.0064106	1092	34	0.9644182	0.020144105	0.96289873	390.10452	0	8.148224						89	6	2	NaN	NaN	NaN	0.3345	1	19072	19072		24.393	8.9307	1	9882.9			11392	1141	6599	6743	9048	9048					0.021933306316441303
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.790380902	2	526.790381	1051.56621	2.2857	0.0012041	-0.48888	-0.00025754	1.7968	0.00094652	526.7899301617673	17.093	0.28792	17.093	17.045	17.333	0	1260	70	0.8615505	0.04238403	0.8615505	349.6064	0	17.198914						489	13	3	NaN	NaN	NaN	6.5392E-05	1	10698	10698		125.02	57.866	1	697790			11393	5351	6600	6744	9049	9049					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.790380902	2	526.790381	1051.56621	2.2072	0.0011627	-0.57927	-0.00030515	1.6279	0.00085758	526.7901277932468	17.114	0.33594	17.1	17.028	17.364	-0.013569	1260	76	0.8615505	0.04607457	0.8600311	349.6064	0	18.696503						674	15	5	NaN	NaN	NaN	0.0052656	1	10481	10481		102.05	43.811	1	748630			11394	5351	6600	6744	9050	9050					0.04248841471940068
IYTVKVEDLTF	11	Unmodified	_IYTVKVEDLTF_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.36083598065	2	664.360836	1326.70712	1.4462	0.00096082	-3.6879	-0.0024501	-2.2417	-0.0014893	664.3582889483445	27.495	0.072397	27.495	27.471	27.543	0	1113	58	0.9515937	0.034813106	0.9515937	385.10794	0	14.088776						142	4	4	NaN	NaN	NaN	0.095947	1	19211	19211		40.006	12.71	1	14547			11395	2503	6601	6745	9051	9051					0.056833753347063976
IYTVKVEDLTF	11	Unmodified						0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	664.360836	1326.70712	1.5317	0.0010176	-1.9465	-0.0012932	-0.41479	-0.00027557	664.3600655875947	27.518	0.072407	27.508	27.484	27.557	-0.009552	1113	46	0.9515937	0.02748698	0.95007426	385.1079		11.123932	0.0068899	0.0012971	-0.00075972	NaN	40.006	122	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14067			11396	2503	6601	6745							0.056833753347063976
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3344242649	2	577.334424	1152.6543	1.9097	0.0011025	-1.6365	-0.00094479	0.27323	0.00015774	577.3341249521176	28.219	0.096525	28.219	28.17	28.267	0	1164	49	0.9204082	0.029377997	0.9204082	373.06644	0	11.907684						170	5	3	NaN	NaN	NaN	0.053204	1	14899	14899		58.398	16.613	1	35848			11397	1681	6602	6746	9052	9052					0.08407462062541526
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF	nc|ENSG00000108528|Q02978-2|SLC25A11	nc|ENSG00000108528|Q02978-2|SLC25A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3344242649	2	577.334424	1152.6543	1.0438	0.00060264	-1.5055	-0.00086916	-0.46164	-0.00026652	577.3335961615743	28.242	0.12071	28.233	28.185	28.305	-0.0089779	1164	52	0.9204082	0.031215787	0.91888875	373.06644	0	12.652618						228	6	4	NaN	NaN	NaN	0.17462	1	14404	14404		30.035	3.9205	1	36351			11398	1681	6602	6746	9053	9053					0.08407462062541526
IYTWGTEEF	9	Unmodified	_IYTWGTEEF_					0	0	0		ENST00000498309.1_1_5:132203154-132203271:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1145.5149674054999	1	1145.51497	1144.50769	2.9779	0.0034113	2.7107	0.0031051	5.6886	0.0065164	1145.5195941802738	28.074	0.19306	28.074	28.026	28.219	0	69	109	1.5776473	0.06362522	1.5776473	319.76187	0	12.895752						457	9	3	NaN	NaN	NaN	0.0094682	1	14603	14603		93.472	60.046	1	64532			11399	4322	6603	6747	9054	9054					-0.05878259893188442
IYTWGTEEF	9	Unmodified	_IYTWGTEEF_					0	0	0		ENST00000498309.1_1_5:132203154-132203271:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	ENST00000498309.1_1_5:132203154-132203271:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1145.5149674054999	1	1145.51497	1144.50769	1.8527	0.0021223	4.844	0.0055489	6.6967	0.0076712	1145.5207673155926	28.073	0.24134	28.064	28.016	28.257	-0.0089779	66	109	1.579413	0.06363201	1.5778936	320.11978	0	12.897095						388	11	2	NaN	NaN	NaN	0.013281	1	14123	14123		82.96	49.535	1	56700			11400	4322	6603	6747	9055	9055					-0.05878259893188442
IYTWIEDHF	9	Unmodified	_IYTWIEDHF_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF;FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.2902137264999	2	612.290214	1222.56587	0.83973	0.00051416	-3.9867	-0.002441	-3.147	-0.0019269	612.2858749845258	27.302	0.14483	27.302	27.253	27.398	0	1119	124	0.9479278	0.075268984	0.9479278	383.961	0	30.487946						171	7	3	NaN	NaN	NaN	0.02781	1	17036	17036		61.977	46.514	1	18533			11401	123	6604	6748	9056	9056					-0.03650578247925296
IYTWIEDHF	9	Unmodified	_IYTWIEDHF_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF;FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.2902137264999	2	612.290214	1222.56587	0.62301	0.00038146	-1.1669	-0.00071448	-0.54389	-0.00033302	612.2885625121326	27.325	0.1448	27.315	27.291	27.436	-0.010124	1119	64	0.9479278	0.03851497	0.94640833	383.961	0	15.600616						157	7	3	NaN	NaN	NaN	0.56671	1	16345	16345		6.8632	3.2934	1	15208			11402	123	6604	6748	9057	9057					-0.03650578247925296
IYTWMDATL	9	Unmodified	_IYTWMDATL_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1113.5285089796998	1	1113.52851	1112.52123	1.1191	0.0012461	-1.091	-0.0012148	0.028099	3.1289E-05	1113.527072869023	31.308	0.19309	31.308	31.259	31.452	0	69	70	1.5776473	0.04062581	1.5776473	319.87152	0	8.236969						314	9	4	NaN	NaN	NaN	0.00050979	1	13364	13364		115.51	68.469	1	31950			11403	3709	6605	6749	9058	9058					-0.03052725385600752
IYTWMDATL	9	Unmodified	_IYTWMDATL_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1113.5285089796998	1	1113.52851	1112.52123	0.79875	0.00088943	-0.059568	-6.633E-05	0.73918	0.0008231	1113.528909261797	31.307	0.16889	31.302	31.253	31.422	-0.0050716	69	64	1.5776473	0.03708923	1.5761279	319.8715	0	7.519928						197	8	2	NaN	NaN	NaN	0.0047854	1	12988	12988		103.03	55.89	1	27574			11404	3709	6605	6749	9059	9059					-0.03052725385600752
IYTWMDATL	9	Unmodified						0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1113.52851	1112.52123	1.0079	0.0011223	-5.2453	-0.0058408	-4.2375	-0.0047185	1113.5215775311533	31.524	0.096533	31.519	31.471	31.568	-0.0044174	126	37	1.544062	0.021233201	1.5425426	313.06204		4.3050537	0.10586	-0.003871	-0.017552	NaN	115.51	67	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4933.6			11405	3709	6605	6749							-0.03052725385600752
IYTWMDATL	9	Oxidation (M)	_IYTWM(Oxidation (M))DATL_		IYTWM(1)DATL		IYTWM(110)DATL	0	0	1		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1129.5234236017998	1	1129.52342	1128.51615	2.1463	0.0024243	-1.2603	-0.0014236	0.88596	0.0010007	1129.5218447020661	27.784	0.21718	27.784	27.688	27.905	0	69	58	1.5776473	0.033553362	1.5776473	319.81592	0	6.801819						213	10	2	NaN	NaN	NaN	0.0023856	1	14018	14018		109.86	57.099	1	20826			11406	3709	6605	6750	9060	9060		413			-0.0429702924823232
IYTWMDATL	9	Oxidation (M)	_IYTWM(Oxidation (M))DATL_		IYTWM(1)DATL		IYTWM(87)DATL	0	0	1		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.5234236017998	1	1129.52342	1128.51615	0.85085	0.00096106	0.58849	0.00066471	1.4393	0.0016258	1129.5249498548965	27.783	0.1448	27.774	27.702	27.846	-0.009552	66	67	1.579413	0.038853288	1.5778936	320.17386	0	7.8762207						218	7	3	NaN	NaN	NaN	0.011942	1	13579	13579		87.021	50.434	1	17696			11407	3709	6605	6750	9061	9061		413			-0.0429702924823232
IYTYIGSIL	9	Unmodified	_IYTYIGSIL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5819247587	1	1042.58192	1041.57465	1.2915	0.0013465	-0.52636	-0.00054878	0.76513	0.00079771	1042.5814187678834	32.104	0.16891	32.104	32.08	32.249	0	102	85	1.5582114	0.049522996	1.5582114	316.19452	0	10.049286						220	8	2	NaN	NaN	NaN	0.02781	1	10290	10290		61.977	14.937	1	33429			11408	3519	6606	6751	9062	9062					0.055523953885767696
IYTYIGSIL	9	Unmodified	_IYTYIGSIL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5819247587	1	1042.58192	1041.57465	0.77648	0.00080955	-0.47076	-0.0004908	0.30572	0.00031874	1042.5813020142139	32.103	0.12066	32.099	32.075	32.196	-0.0037575	99	67	1.5599792	0.03889036	1.5584598	316.55325	0	7.891693						183	6	2	NaN	NaN	NaN	0.01047	1	10084	10084		91.429	17.097	1	30803			11409	3519	6606	6751	9063	9063					0.055523953885767696
IYVALGYGF	9	Unmodified	_IYVALGYGF_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5294952577002	1	1002.5295	1001.52222	0.96698	0.00096943	1.4383	0.0014419	2.4053	0.0024114	1002.5315746908502	31.404	0.12069	31.404	31.356	31.477	0	153	79	1.5281296	0.046073437	1.5281296	310.2523	0	9.3541565						168	6	3	NaN	NaN	NaN	0.033463	1	8656	8656		54.579	28.827	1	19275			11410	2512	6607	6752	9064	9064					0.021518570456237285
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5611893166	1	1008.56119	1007.55391	1.9479	0.0019646	-0.26714	-0.00026942	1.6808	0.0016951	1008.5607103464674	26.456	0.048281	26.456	26.408	26.456	0	168	115	1.5192716	0.06739521	1.5192716	308.42883	0	13.681976						185	3	3	NaN	NaN	NaN	0.011118	1	8898	8898		89.521	17.528	1	34254			11411	6066	6608	6753	9065	9065					0.05043805008892832
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5611893166	1	1008.56119	1007.55391	1.616	0.0016298	-0.51725	-0.00052168	1.0987	0.0011082	1008.5612170937831	26.456	0.048262	26.445	26.421	26.469	-0.011137	168	112	1.5192716	0.06561828	1.5177522	308.42883	0	13.321228						194	3	3	NaN	NaN	NaN	0.00050979	1	8728	8728		115.51	19.264	1	35623			11412	6066	6608	6753	9066	9066					0.05043805008892832
IYVAVMNYL	9	Oxidation (M)	_IYVAVM(Oxidation (M))NYL_		IYVAVM(1)NYL		IYVAVM(56)NYL	0	0	1		ENST00000475983.1_1_19:40877588-40880546:+|nuORF;ENSG00000105223|ENST00000409735|PLD3	ENST00000475983.1_1_19:40877588-40880546:+|nuORF	ENST00000475983.1_1_19:40877588-40880546:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2860854763001	2	551.286085	1100.55762	1.0899	0.00060086	1.5776	0.0008697	2.6675	0.0014706	551.287341968671	28.314	0.096489	28.305	28.233	28.33	-0.0089779	1197	55	0.9001988	0.033100247	0.8986794	365.07913	0	13.42395						87	5	2	NaN	NaN	NaN	0.032417	1	12534	12534		55.947	27.281	1	14963			11413	1519	6609	6754	9067	9067		174			0.011361515111047993
IYVAVMNYL	9	Oxidation (M)						0	0	1		ENST00000475983.1_1_19:40877588-40880546:+|nuORF;ENSG00000105223|ENST00000409735|PLD3	ENST00000475983.1_1_19:40877588-40880546:+|nuORF	ENST00000475983.1_1_19:40877588-40880546:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.286085	1100.55762	1.4846	0.00081842	1.4382	0.00079286	2.9228	0.0016113	551.286519387093	28.17	0.072416	28.17	28.146	28.219	0	1191	73	0.90387505	0.04413849	0.90387505	366.57004		17.900513	-0.067544	-4.6485E-05	0.0025978	NaN	55.947	130	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15365			11414	1519	6609	6754				174			0.011361515111047993
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.80549964995	2	560.8055	1119.59645	2.1873	0.0012266	-0.50896	-0.00028543	1.6783	0.00094121	560.8050873519702	28.725	0.26548	28.725	28.677	28.943	0	1161	139	0.9222442	0.084525764	0.9222442	373.94107	0	34.272522						933	12	4	NaN	NaN	NaN	0.011118	1	13659	13659		89.521	33.574	1	828800			11415	4511	6610	6755	9068	9068					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.80549964995	2	560.8055	1119.59645	1.8963	0.0010635	-0.33036	-0.00018527	1.566	0.0008782	560.8049989391285	28.725	0.33787	28.716	28.668	29.006	-0.0083504	1158	130	0.92408	0.07900041	0.9225606	374.68546	0	32.032166						960	15	4	NaN	NaN	NaN	0.011118	1	13263	13263		89.521	33.574	1	830950			11416	4511	6610	6755	9069	9069					0.04143200137127678
IYVIFIYVWE	10	Unmodified	_IYVIFIYVWE_					0	0	0		ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.9127969674	3	448.912797	1343.71656	0.82909	0.00037219	4.3904	0.0019709	5.2195	0.0023431	448.91430825083927	20.501	0.12028	20.501	20.477	20.597	0	1365	58	0.7969414	0.035141945	0.7969414	483.71384	0	21.329865						157	6	3	NaN	NaN	NaN	0.70538	1	19471	19471		7.6826	0.22722	1	21789			11417	6043	6611	6756	9070	9070					0.05845188410899027
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.6084738601999	1	1047.60847	1046.6012	1.6206	0.0016978	0.79348	0.00083125	2.4141	0.002529	1047.6094322684667	32.056	0.16891	32.056	31.983	32.152	0	90	91	1.5652816	0.05303788	1.5652816	317.60928	0	10.761841						267	8	3	NaN	NaN	NaN	0.0034808	1	10503	10503		106.56	47.959	1	39190			11418	2753	6612	6757	9071	9071					0.07976084279880524
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.6084738601999	1	1047.60847	1046.6012	0.89287	0.00093538	-0.1973	-0.00020669	0.69558	0.00072869	1047.607024674649	32.031	0.14479	32.027	32.003	32.148	-0.0037613	87	97	1.5670487	0.05657375	1.5655292	317.96783	0	11.479309						250	7	3	NaN	NaN	NaN	0.011693	1	10293	10293		87.778	23.228	1	36658			11419	2753	6612	6757	9072	9072					0.07976084279880524
IYVIPQPHF	9	Unmodified	_IYVIPQPHF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3082095144	2	557.30821	1112.60187	1.961	0.0010929	-0.40295	-0.00022457	1.5581	0.00086834	557.8086460399477	25.732	0.14477	25.721	25.648	25.793	-0.0116	1194	64	0.902037	0.038585663	0.9005176	365.77567	0	15.646484						226	7	3	NaN	NaN	NaN	0.17818	1	13010	13010		26.732	13.729	1	30829			11420	3109	6613	6758	9073	9073					0.05006923719588485
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5455392523997	1	1042.54554	1041.53826	2.0813	0.0021699	-0.91751	-0.00095654	1.1638	0.0012133	1042.545793977625	28.484	0.21721	28.484	28.46	28.677	0	156	136	1.5263584	0.07974684	1.5263584	309.731	0	16.182343						685	10	4	NaN	NaN	NaN	0.002833	1	10277	10277		108.51	58.477	1	236640			11421	2082	6614	6759	9074	9074					0.019155184918417945
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5455392523997	1	1042.54554	1041.53826	1.5334	0.0015986	-0.80457	-0.0008388	0.72881	0.00075982	1042.545549962679	28.507	0.21714	28.499	28.451	28.668	-0.0083485	156	136	1.5263584	0.07974684	1.5248389	309.731	0	16.182343						570	10	3	NaN	NaN	NaN	1.433E-07	1	10072	10072		136.23	61.899	1	226340			11422	2082	6614	6759	9075	9075					0.019155184918417945
IYVKFLKNK	9	Unmodified	_IYVKFLKNK_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.86060922565	2	576.860609	1151.70667	2.062	0.0011895	-2.1271	-0.001227	-0.065123	-3.7567E-05	576.8591663020104	26.553	0.072414	26.553	26.529	26.601	0	1164	28	0.9204082	0.016524255	0.9204082	373.07007	0	6.6977844						39	4	2	NaN	NaN	NaN	0.65818	1	14873	14873		2.7852	0	1	2269.6	+		11423	8851	6615	6760	9076	9076					0.13688045196158782
IYVLGTLGF	9	Unmodified	_IYVLGTLGF_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5607953861003	1	982.560795	981.553519	1.8111	0.0017795	1.8374	0.0018053	3.6485	0.0035848	982.56237886443	34.421	0.12064	34.421	34.396	34.517	0	132	73	1.5405227	0.042493343	1.5405227	312.85483	0	8.629669						149	6	2	NaN	NaN	NaN	0.098515	1	7948	7948		36.036	9.3048	1	20259			11424	7897	6616	6761	9077	9077					0.06200430079729813
IYVLGTLGF	9	Unmodified	_IYVLGTLGF_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5607953861003	1	982.560795	981.553519	1.4874	0.0014615	1.3338	0.0013105	2.8212	0.002772	982.5618502728947	34.419	0.12051	34.419	34.37	34.491	-0.00064468	132	64	1.5405227	0.03717172	1.5390033	312.85483	0	7.54895						179	6	3	NaN	NaN	NaN	0.13477	1	7775	7775		30.791	2.9305	1	18302			11425	7897	6616	6761	9078	9078					0.06200430079729813
IYVLPMLTI	9	Unmodified	_IYVLPMLTI_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.81702146395	2	531.817021	1061.61949	0.88647	0.00047144	-1.8316	-0.00097405	-0.94509	-0.00050262	531.8163227551252	38.107	0.14415	38.107	38.035	38.179	0	1239	67	0.87444305	0.040490866	0.87444305	354.7946	0	16.42868						190	7	3	NaN	NaN	NaN	0.056273	1	11200	11200		44.247	13.456	1	14146			11426	2832	6617	6762	9079	9079					0.09114502930242452
IYVLPMLTI	9	Unmodified	_IYVLPMLTI_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.6267664613	1	1062.62677	1061.61949	0.9988	0.0010614	0.69198	0.00073532	1.6908	0.0017967	1062.6275621221992	38.107	0.12013	38.107	38.059	38.179	0	57	55	1.5847093	0.03178227	1.5847093	321.49213	0	6.4477234						127	6	2	NaN	NaN	NaN	0.029744	1	11204	11204		59.445	17.661	1	11242			11427	2832	6617	6762	9080	9080					0.09114502930242452
IYVLPMLTI	9	Unmodified	_IYVLPMLTI_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.6267664613	1	1062.62677	1061.61949	1.6823	0.0017876	0.59525	0.00063253	2.2775	0.0024201	1062.6264596799053	38.081	0.096134	38.084	38.06	38.156	0.0034256	60	55	1.582944	0.031775594	1.5814246	321.134	0	6.44635						121	5	2	NaN	NaN	NaN	0.08074	1	10946	10946		38.608	13.647	1	9013.4			11428	2832	6617	6762	9081	9081					0.09114502930242452
IYVLPMLTI	9	Unmodified						0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.817021	1061.61949	1.574	0.00083706	-2.7719	-0.0014742	-1.198	-0.0006371	532.3160105228455	38.081	0.048058	38.084	38.06	38.108	0.0034256	1233	46	0.87812483	0.027614892	0.8766054	356.28845		11.204376	-0.011541	-0.00073285	0.0010812	NaN	44.247	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3919.1			11429	2832	6617	6762							0.09114502930242452
IYVNPANTHQF	11	Unmodified	_IYVNPANTHQF_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.32511917635	2	652.325119	1302.63569	1.0654	0.00069501	-1.3364	-0.00087175	-0.27093	-0.00017674	652.3242238229813	19.515	0.0963	19.5	19.452	19.549	-0.014141	1080	43	0.9717421	0.02563101	0.97022265	393.33685	0	10.374786						130	5	4	NaN	NaN	NaN	0.0015438	1	17993	17993		77.516	38.057	1	15147			11430	2788	6618	6763	9082	9082					-0.003526995793208698
IYVPCLYQL	9	Unmodified	_IYVPCLYQL_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.5856299281	1	1111.58563	1110.57835	0.99175	0.0011024	4.2317	0.0047039	5.2235	0.0058064	1111.5918838107948	38.732	0.072083	38.732	38.708	38.78	0	57	37	1.5847093	0.021181464	1.5847093	321.3102	0	4.2946777						65	4	2	NaN	NaN	NaN	0.29422	1	13312	13312		19.285	2.7006	1	5193.5	+		11431	9199	6619	6764	9083	9083					0.02748741890763995
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3427806132499	2	618.342781	1234.67101	0.79323	0.00049049	-5.0114	-0.0030988	-4.2182	-0.0026083	618.3394101266051	29.231	0.096537	29.224	29.175	29.272	-0.0077209	1137	64	0.9369253	0.038539886	0.93540585	379.46286	0	15.609009						134	5	2	NaN	NaN	NaN	0.26393	1	16673	16673		30.035	5.4734	1	98651			11432	3243	6620	6765	9084	9084					0.06305962948499655
IYVPDIRNVF	10	Unmodified						0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.342781	1234.67101	1.1795	0.00072933	-5.3829	-0.0033284	-4.2034	-0.0025991	618.3388533831252	29.232	0.072411	29.232	29.184	29.256	0	1137	100	0.9369253	0.06052351	0.9369253	379.46286		24.512573	0.0042402	-0.00027471	0.00075972	NaN	30.035	234	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95505			11433	3243	6620	6765							0.06305962948499655
IYVPVSLGF	9	Unmodified	_IYVPVSLGF_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.5607953861003	1	994.560795	993.553519	1.3517	0.0013444	-0.055274	-5.4973E-05	1.2964	0.0012894	994.5606413942801	33.068	0.21701	33.066	32.993	33.21	-0.0024796	210	145	1.4944444	0.08510387	1.4929249	303.44632	0	17.280304						576	10	3	NaN	NaN	NaN	0.02781	1	8186	8186		61.977	2.5315	1	98956			11434	4855	6621	6766	9085	9085					0.05648430079725131
IYVVGGYSW	9	Unmodified	_IYVVGGYSW_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5196588529	1	1043.51966	1042.51238	1.7939	0.001872	0.66091	0.00068967	2.4548	0.0025616	1043.519723534795	28.701	0.12067	28.701	28.677	28.798	0	132	100	1.5405227	0.058449984	1.5405227	312.60144	0	11.860626						323	6	4	NaN	NaN	NaN	0.0031782	1	10322	10322		107.47	51.522	1	57589			11435	298	6622	6767	9086	9086					-0.0071733095976469485
IYVVGGYSW	9	Unmodified	_IYVVGGYSW_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5196588529	1	1043.51966	1042.51238	1.2948	0.0013511	2.4519	0.0025586	3.7467	0.0039097	1043.5234535782567	28.725	0.28958	28.716	28.62	28.909	-0.0083504	132	103	1.5405227	0.06021154	1.5390033	312.6014	0	12.218079						447	13	3	NaN	NaN	NaN	0.042649	1	10115	10115		50.033	24.232	1	77634			11436	298	6622	6767	9087	9087					-0.0071733095976469485
IYVVNIKCY	9	Unmodified	_IYVVNIKCY_					0	0	0			REV__ENST00000367660.3_1_6:139364011-139364086:+|nuORF	REV__ENST00000367660.3_1_6:139364011-139364086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8019027160001	2	557.801903	1113.58925	1.6321	0.0009104	-6.547	-0.0036519	-4.9149	-0.0027415	557.7979097665947	22.694	0.16883	22.694	22.67	22.838	0	1203	64	0.8965218	0.038623214	0.8965218	363.5353	0	15.66153						138	8	3	NaN	NaN	NaN	0.45297	1	13435	13435		11.548	2.5865	1	17521	+		11437	11865	6623	6768	9088	9088					0.03700144265076233
IYWFINIF	8	Unmodified	_IYWFINIF_					0	0	0		tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	tr|U7SWW5|U7SWW5_FUSNUcysteine-S-conjugatebeta-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01196PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.29985316605	2	558.299853	1114.58515	1.2278	0.00068549	1.4314	0.00079916	2.6592	0.0014846	558.8016633262781	29.329	0.096512	29.329	29.28	29.377	0	1224	79	0.883646	0.04783213	0.883646	358.3103	0	19.395477						141	5	2	NaN	NaN	NaN	0.8439	1	13469	13469		3.1533	0.36816	1	17014			11438	13908	6624	6769	9089	9089					0.03244422833631688
IYWMVNYNF	9	Unmodified	_IYWMVNYNF_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.2891594815001	2	625.289159	1248.56377	0.87968	0.00055005	-4.9781	-0.0031128	-4.0984	-0.0025627	625.2859686217225	33.19	0.21717	33.19	33.118	33.335	0	1176	55	0.9130621	0.03305739	0.9130621	369.75256	0	13.386871						265	10	4	NaN	NaN	NaN	0.31766	1	17739	17739		17.78	6.8152	1	22750			11439	1802	6625	6770	9090	9090					-0.05057330257363901
IYWMVNYNF	9	Unmodified	_IYWMVNYNF_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.2891594815001	2	625.289159	1248.56377	0.50847	0.00031794	-4.4218	-0.0027649	-3.9134	-0.002447	625.2857430976937	33.189	0.12067	33.186	33.162	33.283	-0.0024796	1173	49	0.91489893	0.029381156	0.9133795	370.4964	0	11.898163						160	6	3	NaN	NaN	NaN	0.049695	1	16991	16991		47.04	29.241	1	16349			11440	1802	6625	6770	9091	9091					-0.05057330257363901
IYWMVNYNF	9	Oxidation (M)	_IYWM(Oxidation (M))VNYNF_		IYWM(1)VNYNF		IYWM(44)VNYNF	0	0	1		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.28661679255	2	633.286617	1264.55868	1.1057	0.00070021	-2.3832	-0.0015092	-1.2775	-0.00080903	633.285337327961	30.534	0.26542	30.529	30.432	30.698	-0.0057545	1149	76	0.92958635	0.0458709	0.9280669	376.39212	0	18.573273						356	12	4	NaN	NaN	NaN	0.056273	1	17297	17297		44.247	29.822	1	40518			11441	1802	6625	6771	9092	9092		201			-0.0630163411999547
IYWSAHSYKG	10	Unmodified	_IYWSAHSYKG_					0	0	0		ENST00000462804.2_1_17:29645360-29645447:-|nuORF	ENST00000462804.2_1_17:29645360-29645447:-|nuORF	ENST00000462804.2_1_17:29645360-29645447:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.29583042065	2	606.29583	1210.57711	0.74239	0.00045011	8.6903	0.0052689	9.4327	0.005719	606.3033238745326	29.207	0.048298	29.2	29.151	29.2	-0.0077209	1152	67	0.92775106	0.04037732	0.9262317	375.82986	0	16.35675						87	3	3	NaN	NaN	NaN	0.68669	1	16060	16060		8.962	0.67169	1	12460			11442	7088	6626	6772	9093	9093					-0.019757561537971924
IYWSAHSYKG	10	Unmodified						0	0	0		ENST00000462804.2_1_17:29645360-29645447:-|nuORF	ENST00000462804.2_1_17:29645360-29645447:-|nuORF	ENST00000462804.2_1_17:29645360-29645447:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.29583	1210.57711	1.1802	0.00071553	4.449	0.0026974	5.6292	0.0034129	606.7980756709836	29.329	0.12065	29.329	29.28	29.401	0	1158	58	0.92408	0.034869432	0.92408	374.34274		14.125549	0.064584	-0.0024118	-0.0010758	NaN	8.962	133	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65368			11443	7088	6626	6772							-0.019757561537971924
IYWTGEAPN	9	Unmodified	_IYWTGEAPN_					0	0	0			REV__nc|ENSG00000064012|Q14790-3|CASP8	REV__nc|ENSG00000064012|Q14790-3|CASP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7481817363	2	525.748182	1049.48181	1.3675	0.00071898	1.3775	0.00072424	2.7451	0.0014432	525.7480862761325	24.695	0.072388	24.682	24.682	24.755	-0.012392	1263	46	0.85970795	0.027644694	0.8581885	348.86765	0	11.21817						63	4	2	NaN	NaN	NaN	0.61413	1	10379	10379		4.9097	0	1	5879.8	+		11444	8176	6627	6773	9094	9094					-0.04095109344825687
IYWTGEAPN	9	Unmodified						0	0	0			REV__nc|ENSG00000064012|Q14790-3|CASP8	REV__nc|ENSG00000064012|Q14790-3|CASP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.748182	1049.48181	1.3051	0.00068616	1.301	0.000684	2.6061	0.0013702	525.7482686086736	24.695	0.072384	24.695	24.671	24.743	0	1266	43	0.85786515	0.025803149	0.85786515	348.11987		10.470856	0.0062799	-4.2302E-05	-0.00016167	NaN	4.9097	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4937.1	+		11445	8176	6627	6773							-0.04095109344825687
IYWTGEAPN	9	Unmodified						0	0	0			REV__nc|ENSG00000064012|Q14790-3|CASP8	REV__nc|ENSG00000064012|Q14790-3|CASP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.748182	1049.48181	1.3675	0.00071898	1.3775	0.00072424	2.7451	0.0014432	525.7480862761325	24.695	0.072388	24.682	24.682	24.755	-0.012392	1263	46	0.85970795	0.027644694	0.8581885	348.86765		11.21817	-0.0062799	3.8164E-05	0.00016167	NaN	4.9097	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5879.8	+		11446	8176	6627	6773							-0.04095109344825687
IYWTKYYTL	9	Unmodified	_IYWTKYYTL_					0	0	0		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.8264320573	2	625.826432	1249.63831	2.066	0.001293	-3.6244	-0.0022683	-1.5584	-0.00097528	625.8240161340358	25.998	0.12068	25.998	25.974	26.094	0	1143	58	0.9332562	0.034850597	0.9332562	377.9268	0	14.112915						237	6	4	NaN	NaN	NaN	0.053204	1	17772	17772		50.831	20.221	1	39514			11447	2921	6628	6774	9095	9095					0.023477558256672637
IYYDVNAGLES	11	Unmodified	_IYYDVNAGLES_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.2956930349001	2	622.295693	1242.57683	1.7148	0.0010671	-8.845	-0.0055042	-7.1302	-0.0044371	622.7910474808278	26.601	0.24135	26.601	26.481	26.722	0	1074	148	0.9754029	0.08983928	0.9754029	395.01886	0	36.383118						622	11	4	NaN	NaN	NaN	0.13649	1	17589	17589		36.235	6.6365	1	135370	+		11448	13443	6629	6775	9096	9096					-0.034752206642679084
IYYDVNAGLES	11	Unmodified	_IYYDVNAGLES_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.2956930349001	2	622.295693	1242.57683	1.4686	0.00091393	-7.4745	-0.0046514	-6.0059	-0.0037374	622.2913512856272	29.039	0.2655	29.039	28.943	29.208	0	1149	145	0.92958635	0.08798212	0.92958635	376.46405	0	35.631012						742	12	4	NaN	NaN	NaN	0.47586	1	17590	17590		19.336	0.21812	1	103540	+		11449	13443	6629	6775	9097	9097					-0.034752206642679084
IYYDVNAGLES	11	Unmodified	_IYYDVNAGLES_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2956930349001	2	622.295693	1242.57683	0.94448	0.00058774	-7.7852	-0.0048447	-6.8407	-0.0042569	622.7914792170953	26.625	0.41022	26.614	26.494	26.904	-0.010643	1071	133	0.977233	0.08065021	0.97571355	395.76	0	32.661743						677	18	4	NaN	NaN	NaN	0.19064	1	16840	16840		31.198	7.8636	1	146640	+		11450	13443	6629	6775	9098	9098					-0.034752206642679084
IYYDVNAGLES	11	Unmodified						0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.295693	1242.57683	1.7148	0.0010671	-8.845	-0.0055042	-7.1302	-0.0044371	622.7910474808278	26.601	0.24135	26.601	26.481	26.722	0	1074	148	0.9754029	0.08983928	0.9754029	395.01886		36.383118	-0.0065734	-0.00045628	-0.00015533	NaN	36.235	622	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135370	+		11451	13443	6629	6775							-0.034752206642679084
IYYDVNAGLES	11	Unmodified						0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.295693	1242.57683	0.94448	0.00058774	-7.7852	-0.0048447	-6.8407	-0.0042569	622.7914792170953	26.625	0.41022	26.614	26.494	26.904	-0.010643	1071	133	0.977233	0.08065021	0.97571355	395.76		32.661743	0.0065734	0.00086271	0.00015533	NaN	36.235	677	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146640	+		11452	13443	6629	6775							-0.034752206642679084
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8080423389	2	582.808042	1163.60153	2.4763	0.0014432	-1.9463	-0.0011343	0.53001	0.0003089	582.8070179835275	25.829	0.21718	25.829	25.781	25.998	0	1194	76	0.902037	0.045930386	0.902037	365.57944	0	18.614777						404	10	4	NaN	NaN	NaN	0.04947	1	15277	15277		47.136	20.404	1	86490			11453	1795	6630	6776	9099	9099					0.02627503999747205
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8080423389	2	582.808042	1163.60153	2.3614	0.0013763	-0.95164	-0.00055462	1.4098	0.00082163	582.807345329732	25.829	0.19307	25.817	25.793	25.986	-0.011602	1191	76	0.90387505	0.045935333	0.9023556	366.32434	0	18.61679						434	9	4	NaN	NaN	NaN	0.012648	1	14750	14750		84.879	45.42	1	91820			11454	1795	6630	6776	9100	9100					0.02627503999747205
IYYIDMQKF	9	Unmodified	_IYYIDMQKF_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8046423702	2	610.804642	1219.59473	1.4692	0.0008974	-3.9637	-0.002421	-2.4945	-0.0015236	610.8040803366006	25.612	0.21712	25.6	25.528	25.745	-0.0116	1167	82	0.91857195	0.04958874	0.9170525	372.08044	0	20.086609						329	9	4	NaN	NaN	NaN	0.29341	1	16286	16286		19.336	3.8738	1	40451			11455	3030	6631	6777	9101	9101					-0.006281769431325301
IYYIYGFVSAS	11	Unmodified	_IYYIYGFVSAS_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8213466794001	2	641.821347	1281.62814	2.4544	0.0015753	-2.8318	-0.0018175	-0.37739	-0.00024222	641.8195108019412	17.45	0.16802	17.436	17.364	17.532	-0.013569	1137	31	0.9369253	0.018343449	0.93540585	379.30908	0	7.426239						122	8	3	NaN	NaN	NaN	0.76304	1	17630	17630		3.2116	0.61216	1	7704.7			11456	2677	6632	6778	9102	9102					-0.001408518995731356
IYYKTISYYN	10	Unmodified	_IYYKTISYYN_					0	0	0		ENSG00000204022|ENST00000371939|LIPJ	ENSG00000204022|ENST00000371939|LIPJ	ENSG00000204022|ENST00000371939|LIPJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.3320785412002	2	664.332079	1326.6496	2.6897	0.0017868	-0.64748	-0.00043014	2.0422	0.0013567	664.3315577242149	26.167	0.096525	26.156	26.107	26.204	-0.011135	1098	37	0.960755	0.02198124	0.9592356	388.81567	0	8.895782						69	5	2	NaN	NaN	NaN	0.77024	1	18346	18346		2.8895	0	1	5267.3			11457	5859	6633	6779	9103	9103					-0.0006546687084210134
IYYRHANQRWP	11	Unmodified	_IYYRHANQRWP_					0	0	0			REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.92498153786664	3	501.924982	1502.75312	1.8368	0.00092193	-9.2564	-0.004646	-7.4196	-0.0037241	501.9198836983685	22.597	0.072405	22.597	22.573	22.645	0	1362	40	0.79879075	0.024041891	0.79879075	484.3144	0	14.576813						59	4	2	NaN	NaN	NaN	0.77797	1	20595	20595		0.1369	0.018989	1	4457.8	+		11458	11436	6634	6780	9104	9104					0.02184878080151975
IYYRHANQRWP	11	Unmodified						0	0	0			REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	501.924982	1502.75312	1.8368	0.00092193	-9.2564	-0.004646	-7.4196	-0.0037241	501.9198836983685	22.597	0.072405	22.597	22.573	22.645	0	1362	40	0.79879075	0.024041891	0.79879075	484.3144		14.576813	-0.089407	0.00025451	0.0016844	NaN	0.1369	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4457.8	+		11459	11436	6634	6780							0.02184878080151975
IYYRHANQRWP	11	Unmodified						0	0	0			REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	501.924982	1502.75312	2.0343	0.0010211	-9.6224	-0.0048297	-7.5881	-0.0038086	501.91999978392715	22.79	0.072216	22.776	22.776	22.848	-0.01354	1365	37	0.7969414	0.02219367	0.79542196	483.1931		13.456238	0.089407	-0.00029649	-0.0016844	NaN	0.1369	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3060.1	+		11460	11436	6634	6780							0.02184878080151975
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3189711659501	2	618.318971	1234.62339	1.2842	0.00079404	-1.1574	-0.00071565	0.12677	7.8384E-05	618.3186147924627	19.324	0.11996	19.324	19.3	19.42	0	1092	52	0.9644182	0.031135082	0.9644182	390.59787	0	12.609985						204	6	3	NaN	NaN	NaN	0.1159	1	17394	17394		43.776	17.661	1	33001			11461	331	6635	6781	9105	9105					0.015462639576753645
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3189711659501	2	618.318971	1234.62339	1.0132	0.0006265	-1.4466	-0.00089448	-0.4334	-0.00026798	618.3183547192829	19.37	0.16829	19.356	19.332	19.5	-0.014141	1092	55	0.9644182	0.032968342	0.96289873	390.59787	0	13.352478						226	8	4	NaN	NaN	NaN	0.044307	1	16664	16664		53.652	25.863	1	32313			11462	331	6635	6781	9106	9106					0.015462639576753645
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8107819931	2	587.810782	1173.60701	1.4595	0.00085791	-1.5866	-0.0009326	-0.12708	-7.4697E-05	587.8105126894084	23.875	0.072304	23.861	23.813	23.886	-0.013048	1194	43	0.902037	0.02573353	0.9005176	365.5429	0	10.428314						90	4	2	NaN	NaN	NaN	0.04743	1	15052	15052		48.002	15.549	1	23681			11463	4060	6636	6782	9107	9107					0.027151827915531612
KAAGAARG	8	Unmodified	_KAAGAARG_					0	0	0		ENST00000376214.5_1_9:87285518-87285842:+|nuORF	REV__ADGRA3|p.E60K|1|0.48|ENSG00000152990|chr4:22515607-22515607|C/T|missense_variant	REV__ADGRA3|p.E60K|1|0.48|ENSG00000152990|chr4:22515607-22515607|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.4052977971	1	701.405298	700.398021	0.87124	0.00061109	4.231	0.0029676	5.1022	0.0035787	701.4083525754261	32.828	0.072376	32.828	32.804	32.876	0	618	31	1.2513325	0.018005848	1.2513325	255.533	0	3.6769257						48	4	2	NaN	NaN	NaN	0.84887	1	3229	3229		0.32989	0	1	3276.9			11464	6697	6637	6783	9108	9108					0.03583824068800823
KAASAGKK	8	Unmodified	_KAASAGKK_					0	0	0		ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000524965.5_1_8:145540848-145542370:-|nuORF	ENST00000524965.5_1_8:145540848-145542370:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.4675637029	1	760.467564	759.460287	-0.22383	-0.00017022	-3.7269	-0.0028342	-3.9507	-0.0030044	760.4650137281075	58.434	0.16799	58.434	58.314	58.482	-0.00048447	540	73	1.2980826	0.043098688	1.2965631	264.6842	0	8.787994						150	8	2	NaN	NaN	NaN	0.84897	1	4137	4137		0.27539	0	1	19166			11465	5383	6638	6784	9109	9109					0.07093550417118877
KAAVGVKK	8	Unmodified	_KAAVGVKK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135285-185135612:-|nuORF;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.5352493376	1	800.535249	799.527973	-0.10452	-8.3673E-05	-8.0231	-0.0064228	-8.1276	-0.0065064	800.5285768217655	56.371	0.095894	56.37	56.346	56.442	-0.00056458	357	148	1.407258	0.087530255	1.4057386	286.69025	0	17.831879						327	5	4	NaN	NaN	NaN	0.84727	1	4655	4655		1.2418	0.91196	1	70805			11466	4947	6639	6785	9110	9110					0.12019000347936526
KAAVLRAV	8	Unmodified	_KAAVLRAV_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.27671242074996	2	414.276712	826.538872	1.8306	0.00075839	-3.1568	-0.0013078	-1.3262	-0.0005494	414.27566101519193	14.069	0.072017	14.069	14.045	14.117	0	1446	37	0.7469324	0.022256374	0.7469324	304.15997	0	9.063049						57	4	2	NaN	NaN	NaN	0.84455	1	5104	5104		2.7852	0	1	4960.9			11467	1529	6640	6786	9111	9111					0.11866402722216662
KAAVLRAV	8	Unmodified						0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	414.276712	826.538872	1.5599	0.00064621	-3.8232	-0.0015839	-2.2634	-0.00093767	414.27494897096705	14.141	0.095838	14.13	14.082	14.178	-0.010673	1443	34	0.7487872	0.02040279	0.7472678	304.91528		8.308258	0.030546	-0.000349	0.00016768	NaN	2.7852	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4675.7			11468	1529	6640	6786							0.11866402722216662
KACGAGAG	8	Unmodified	_KACGAGAG_					0	0	0		ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.2977211826001	1	634.297721	633.290445	1.9517	0.001238	5.727	0.0036326	7.6787	0.0048706	634.3009403428044	18.94	0.072033	18.94	18.916	18.988	0	681	49	1.2134778	0.02887404	1.2134778	248.30566	0	5.9082947						102	4	3	NaN	NaN	NaN	0.84727	1	1554	1554		1.2418	0.91196	1	10688			11469	7388	6641	6787	9112	9112					-0.040868888569320916
KACGAGAG	8	Unmodified	_KACGAGAG_					0	0	0		ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.2977211826001	1	634.297721	633.290445	1.6493	0.0010462	6.5789	0.004173	8.2282	0.0052191	634.3017579902083	19.058	0.14415	19.044	18.996	19.14	-0.014059	1398	82	0.77658504	0.050014377	0.7750656	158.90727	0	10.2341						194	7	2	NaN	NaN	NaN	0.84887	1	1478	1478		0.32989	0.32989	1	17570			11470	7388	6641	6787	9113	9113					-0.040868888569320916
KACGAGAG	8	Unmodified						0	0	0		ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	ENST00000518821.1_1_1:23695790-23697703:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	634.297721	633.290445	1.8068	0.0011461	5.0584	0.0032085	6.8652	0.0043546	634.3007999430171	19.058	0.14415	19.044	18.996	19.14	-0.014059	681	43	1.2134778	0.02526486	1.2119584	248.30566		5.1697693	0.051772	-0.00024073	-0.00075972	NaN	1.2418	96	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8390.4			11471	7388	6641	6787							-0.040868888569320916
KADGVPVYL	9	Unmodified	_KADGVPVYL_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.27129269184996	2	481.271293	960.528032	1.7463	0.00084045	-3.6287	-0.0017464	-1.8824	-0.00090596	481.2692900668072	21.97	0.096354	21.956	21.908	22.004	-0.013895	1323	58	0.8228144	0.035092473	0.82129496	334.2965	0	14.257507						112	5	2	NaN	NaN	NaN	0.27608	1	7205	7205		20.449	2.6497	1	17691			11472	2049	6642	6788	9114	9114					0.04618955557270965
KAEELSNQL	9	Unmodified	_KAEELSNQL_					0	0	0		ENSG00000165669|ENST00000369183|FAM204A	ENSG00000165669|ENST00000369183|FAM204A	ENSG00000165669|ENST00000369183|FAM204A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5367654800998	1	1031.53677	1030.52949	2.2165	0.0022864	-0.42266	-0.00043599	1.7939	0.0018504	1031.5364389032386	25.66	0.19304	25.66	25.612	25.805	0	204	112	1.4979934	0.06562519	1.4979934	304.01758	0	13.318634						299	9	2	NaN	NaN	NaN	0.032689	1	9800	9800		55.592	0	1	51028			11473	4418	6643	6789	9115	9115					0.015445448553691676
KAFESEPTL	9	Unmodified	_KAFESEPTL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.263664625	2	511.263665	1020.51278	2.5462	0.0013018	2.5323	0.0012947	5.0786	0.0025965	511.26277153486643	18.436	0.19186	18.436	18.364	18.556	0	1305	88	0.83389086	0.053521693	0.83389086	338.5155	0	21.72699						312	9	3	NaN	NaN	NaN	0.14787	1	9388	9388		28.896	4.3336	1	40341			11474	5701	6644	6790	9116	9116					0.003340439694284214
KAFESEPTL	9	Unmodified						0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.263665	1020.51278	1.7359	0.00088752	1.0471	0.00053534	2.783	0.0014229	511.2628862080942	18.458	0.21602	18.444	18.372	18.588	-0.01395	1305	88	0.83389086	0.053527474	0.8323714	338.5155		21.72931	0.0036176	-0.00064535	-0.00075972	NaN	28.896	245	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38234			11475	5701	6644	6790							0.003340439694284214
KAGGAPPP	8	Unmodified	_KAGGAPPP_					0	0	0			REV__ENSG00000139800|ENST00000267294|ZIC5	REV__ENSG00000139800|ENST00000267294|ZIC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3882507494001	1	694.388251	693.380974	1.1138	0.00077344	-11.008	-0.007644	-9.8945	-0.0068706	694.3806823441723	36.107	0.12051	36.108	36.084	36.205	0.0011024	732	61	1.1827712	0.03615451	1.1812518	241.57913	0	7.384491						138	6	2	NaN	NaN	NaN	0.84876	1	3048	3048		0.39566	0	1	16213	+		11476	9780	6645	6791	9117	9117					0.022019034629920498
KAGGAPPP	8	Unmodified						0	0	0			REV__ENSG00000139800|ENST00000267294|ZIC5	REV__ENSG00000139800|ENST00000267294|ZIC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	694.388251	693.380974	1.2976	0.00090104	-6.3775	-0.0044284	-5.0799	-0.0035274	694.3839535653664	36.278	0.024128	36.278	36.254	36.278	0	738	46	1.179155	0.027123094	1.179155	240.8405		5.5398407	0.084668	0.0018294	-0.0010484	NaN	0.39566	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4894	+		11477	9780	6645	6791							0.022019034629920498
KAGGAPPP	8	Unmodified						0	0	0			REV__ENSG00000139800|ENST00000267294|ZIC5	REV__ENSG00000139800|ENST00000267294|ZIC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.388251	693.380974	1.1138	0.00077344	-11.008	-0.007644	-9.8945	-0.0068706	694.3806823441723	36.107	0.12051	36.108	36.084	36.205	0.0011024	732	61	1.1827712	0.03615451	1.1812518	241.57913		7.384491	-0.084668	-0.0013862	0.0010484	NaN	0.39566	138	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16213	+		11478	9780	6645	6791							0.022019034629920498
KAGKPGPV	8	Unmodified	_KAGKPGPV_					0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4617500435002	1	753.46175	752.454474	-0.031356	-2.3626E-05	1.196	0.00090116	1.1647	0.00087754	753.46295662143	55.458	0.096153	55.458	55.458	55.554	-0.00061798	495	73	1.3249949	0.043048143	1.3234755	270.2163	0	8.779144						96	5	2	NaN	NaN	NaN	0.84727	1	4035	4035		1.2418	0.91196	1	7626	+		11479	11138	6646	6792	9118	9118					0.06834451905479
KAGKPGPV	8	Unmodified	_KAGKPGPV_					0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4617500435002	1	753.46175	752.454474	0.069376	5.2272E-05	3.5883	0.0027036	3.6577	0.0027559	753.4628527082384	55.41	0.095852	55.409	55.314	55.409	-0.00061798	498	52	1.3232021	0.03048098	1.3216827	269.85068	0	6.2162476						92	5	2	NaN	NaN	NaN	0.84455	1	4036	4036		2.7852	1.5433	1	6093.6	+		11480	11138	6646	6792	9119	9119					0.06834451905479
KAGKPGPV	8	Unmodified						0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	753.46175	752.454474	1.6417	0.001237	1.1575	0.00087213	2.7992	0.0021091	753.46276342904	55.46	0.24009	55.46	55.34	55.58	0	498	58	1.3232021	0.03407061	1.3232021	269.85068		6.948303	0.0014447	-6.6006E-06	-0.00013669	NaN	1.2418	191	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14815	+		11481	11138	6646	6792							0.06834451905479
KAGKPGPV	8	Unmodified						0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.46175	752.454474	-0.031356	-2.3626E-05	1.196	0.00090116	1.1647	0.00087754	753.46295662143	55.458	0.096153	55.458	55.458	55.554	-0.00061798	495	73	1.3249949	0.043048143	1.3234755	270.2163		8.779144	-0.0014447	2.2433E-05	0.00013669	NaN	1.2418	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7626	+		11482	11138	6646	6792							0.06834451905479
KAGNPGGG	8	Unmodified	_KAGNPGGG_					0	0	0		RPL22|p.L56P|1|0.14|ENSG00000116251|chr1:6193005-6193005|A/G|missense_variant	RPL22|p.L56P|1|0.14|ENSG00000116251|chr1:6193005-6193005|A/G|missense_variant	RPL22|p.L56P|1|0.14|ENSG00000116251|chr1:6193005-6193005|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3314641520002	1	657.331464	656.324188	1.3262	0.00087174	4.4341	0.0029147	5.7603	0.0037864	657.3341645188997	25.057	0.048286	25.045	25.021	25.069	-0.012011	702	151	1.2008407	0.09047341	1.1993213	245.53766	0	18.499237						198	3	2	NaN	NaN	NaN	0.84887	1	2108	2108		0.32989	0.32989	1	21461			11483	13665	6647	6793	9120	9120					-0.017721440935133614
KAGPGAPG	8	Unmodified	_KAGPGAPG_					0	0	0			REV__nc|ENSG00000160404|Q8N2E6|TOR2A	REV__nc|ENSG00000160404|Q8N2E6|TOR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3569506210001	1	654.356951	653.349674	1.5329	0.0010031	2.251	0.0014729	3.7839	0.002476	654.3616414699942	30.004	0.072445	30.004	30.004	30.077	0	1101	34	0.95892316	0.020150542	0.95892316	196.09065	0	4.1206055						68	4	2	NaN	NaN	NaN	0.84692	1	2153	2153		1.4396	0	1	8624.5	+		11484	13151	6648	6794	9121	9121					0.009133304289093758
KAGRGPGN	8	Unmodified	_KAGRGPGN_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.4111114565002	1	756.411111	755.403835	1.6053	0.0012143	3.9149	0.0029613	5.5202	0.0041755	756.4135617358509	24.405	0.16901	24.393	24.344	24.513	-0.012747	573	94	1.2783196	0.055761337	1.2768002	260.67923	0	11.371063						303	8	3	NaN	NaN	NaN	0.8439	1	4086	4086		3.1533	1.7138	1	68363			11485	3366	6649	6795	9122	9122					0.016349225804788148
KAGSSSSS	8	Unmodified	_KAGSSSSS_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3315237315002	1	710.331524	709.324247	0.75732	0.00053795	5.307	0.0037698	6.0644	0.0043077	710.3344690368028	33.335	0.024147	33.335	33.335	33.359	0	708	46	1.1972283	0.027091146	1.1972283	244.42546	0	5.5309143						38	2	2	NaN	NaN	NaN	0.84887	1	3413	3413		0.32989	0	1	2435.9			11486	2350	6650	6796	9123	9123					-0.042041888841708897
KAIAAAAH	8	Unmodified	_KAIAAAAH_					0	0	0			REV__ENST00000606061.1_1_20:32881824-32883045:-|nuORF	REV__ENST00000606061.1_1_20:32881824-32883045:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.72431270949994	2	376.724313	751.434072	2.4811	0.0009347	-5.407	-0.0020369	-2.9258	-0.0011022	376.7225679437125	25.563	0.096548	25.552	25.479	25.576	-0.011602	1413	28	0.7673241	0.016675055	0.76580465	312.97263	0	6.801361						57	5	2	NaN	NaN	NaN	0.84887	1	4013	4013		0.32989	0	1	4515.8	+		11487	8855	6651	6797	9124	9124					0.04841281245649043
KAIAPGDIGFG	11	Unmodified	_KAIAPGDIGFG_					0	0	0			REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF	REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2874740723	2	523.287474	1044.5604	1.833	0.00095916	-4.482	-0.0023454	-2.6491	-0.0013862	523.2844222536437	23.223	0.19301	23.21	23.162	23.355	-0.013294	1287	100	0.8449601	0.060838223	0.84344065	342.90396	0	24.689514						449	9	4	NaN	NaN	NaN	0.57804	1	10201	10201		15.463	0.28729	1	102680	+		11488	8347	6652	6798	9125	9125					0.03989742960266085
KAIIEKHF	8	Unmodified	_KAIIEKHF_					0	0	0		tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1	tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1	tr|U7SJH0|U7SJH0_FUSNURibosomalRNAsmallsubunitmethyltransferaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5829278117002	1	985.582928	984.575651	1.5426	0.0015204	1.0548	0.0010396	2.5974	0.00256	985.5856930594915	34.685	0.21691	34.684	34.587	34.804	-0.0006485	198	88	1.5015416	0.0514524	1.5000222	304.92545	0	10.448669						318	10	3	NaN	NaN	NaN	0.81251	1	7875	7875		7.5404	2.0745	1	39171			11489	13747	6653	6799	9126	9126					0.08274654548142735
KAITEESGGA	10	Unmodified	_KAITEESGGA_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4789162502001	1	962.478916	961.47164	1.9644	0.0018907	5.8049	0.0055871	7.7693	0.0074778	962.4840038770978	26.094	0.14483	26.094	26.022	26.167	0	264	88	1.4624695	0.051594615	1.4624695	297.08936	0	10.481049						206	7	4	NaN	NaN	NaN	0.74182	1	7369	7369		5.1889	0.77579	1	19827	+		11490	9654	6654	6800	9127	9127					-0.010637170700420029
KAKKFETSIV	10	Unmodified	_KAKKFETSIV_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8451561267001	2	575.845156	1149.67576	0.89654	0.00051627	-6.2804	-0.0036165	-5.3838	-0.0031003	575.8416863965808	30.607	0.19301	30.601	30.529	30.722	-0.0057545	1137	70	0.9369253	0.04219216	0.93540585	379.77292	0	17.102142						248	9	3	NaN	NaN	NaN	0.77421	1	14298	14298		1.9246	0	1	25202	+		11491	13489	6655	6801	9128	9128					0.10690847091291289
KAKKFETSIV	10	Unmodified						0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.845156	1149.67576	1.5259	0.00087865	-5.5521	-0.0031971	-4.0262	-0.0023185	575.842477927909	30.511	0.048231	30.511	30.463	30.511	0	1149	37	0.92958635	0.022021592	0.92958635	376.79813		8.9262085	-0.044877	0.00069029	-0.0029098	NaN	1.9246	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3768.7	+		11492	13489	6655	6801							0.10690847091291289
KAKKFETSIV	10	Unmodified						0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.845156	1149.67576	0.89654	0.00051627	-6.2804	-0.0036165	-5.3838	-0.0031003	575.8416863965808	30.607	0.19301	30.601	30.529	30.722	-0.0057545	1137	70	0.9369253	0.04219216	0.93540585	379.77292		17.102142	0.044877	-0.00014852	0.0029098	NaN	1.9246	248	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25202	+		11493	13489	6655	6801							0.10690847091291289
KAKKNISRP	9	Unmodified	_KAKKNISRP_					0	0	0			REV__ENSG00000182173|ENST00000333213|TSEN54	REV__ENSG00000182173|ENST00000333213|TSEN54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.330007589	2	521.330008	1040.64546	0.45405	0.00023671	-4.8168	-0.0025111	-4.3628	-0.0022744	521.8293782265677	58.29	0.024014	58.29	58.29	58.314	-0.00048065	1131	31	0.94059354	0.018339515	0.93907416	381.73288	0	7.442932						33	2	2	NaN	NaN	NaN	0.68263	1	10044	10044		0.69115	0	1	2833.5	+		11494	10860	6656	6802	9129	9129					0.12676533216745156
KAKKPVGG	8	Unmodified	_KAKKPVGG_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.5039492092002	1	784.503949	783.496673	1.9643	0.001541	0.060587	4.7531E-05	2.0249	0.0015886	784.5043197869669	56.181	0.21586	56.181	56.085	56.301	0	465	67	1.3429124	0.03940618	1.3429124	273.6761	0	8.03067						354	10	3	NaN	NaN	NaN	0.84727	1	4548	4548		1.2418	0	1	48260			11495	3887	6657	6803	9130	9130					0.09626427313855856
KAKKPVGG	8	Unmodified	_KAKKPVGG_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.5039492092002	1	784.503949	783.496673	-0.16371	-0.00012843	2.7824	0.0021828	2.6186	0.0020543	784.5061486731198	56.179	0.24004	56.178	56.058	56.298	-0.00056458	462	67	1.3447032	0.039397717	1.3431838	274.04102	0	8.028961						302	11	2	NaN	NaN	NaN	0.84727	1	4458	4458		1.2418	0	1	51646			11496	3887	6657	6803	9131	9131					0.09626427313855856
KAKRAAWG	8	Unmodified	_KAKRAAWG_					0	0	0			REV__ENSG00000100399|ENST00000216241|CHADL	REV__ENSG00000100399|ENST00000216241|CHADL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	887.5209962569	1	887.520996	886.51372	1.0912	0.0009685	1.4198	0.0012601	2.511	0.0022286	887.5214991460664	35.023	0.096508	35.023	34.999	35.096	0	357	52	1.407258	0.030325532	1.407258	286.2148	0	6.167755						113	5	2	NaN	NaN	NaN	0.84692	1	5898	5898		1.4396	0.36755	1	8024.9	+		11497	8816	6658	6804	9132	9132					0.0659234791964991
KAKRAAWG	8	Unmodified						0	0	0			REV__ENSG00000100399|ENST00000216241|CHADL	REV__ENSG00000100399|ENST00000216241|CHADL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	887.520996	886.51372	1.0912	0.0009685	1.4198	0.0012601	2.511	0.0022286	887.5214991460664	35.023	0.096508	35.023	34.999	35.096	0	357	52	1.407258	0.030325532	1.407258	286.2148		6.167755	-0.01133	-0.00070005	-0.00013221	NaN	1.4396	113	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8024.9	+		11498	8816	6658	6804							0.0659234791964991
KAKRAAWG	8	Unmodified						0	0	0			REV__ENSG00000100399|ENST00000216241|CHADL	REV__ENSG00000100399|ENST00000216241|CHADL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	887.520996	886.51372	1.3842	0.0012285	3.3553	0.0029779	4.7394	0.0042063	887.5240568188452	35.046	0.096539	35.046	34.998	35.094	-4.5776E-05	354	64	1.4090419	0.03746903	1.4075224	286.5776		7.6206055	0.01133	0.0010177	0.00013221	NaN	1.4396	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8838.8	+		11499	8816	6658	6804							0.0659234791964991
KALGHQLG	8	Unmodified	_KALGHQLG_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4784627402003	1	823.478463	822.471186	-0.29512	-0.00024303	0.39431	0.0003247	0.099185	8.1677E-05	823.478930073403	54.618	0.19263	54.617	54.497	54.689	-0.0006218	414	52	1.3733286	0.030390263	1.3718091	279.64624	0	6.1882324						136	9	2	NaN	NaN	NaN	0.84727	1	4937	4937		1.2418	0	1	12136			11500	5678;276	6659	6805	9133	9133					0.052849527914418104
KALGVSSS	8	Unmodified	_KALGVSSS_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.4199448083001	1	748.419945	747.412668	1.8175	0.0013603	5.634	0.0042166	7.4515	0.0055769	748.4246236387484	32.73	0.36193	32.727	32.655	33.017	-0.0031052	549	196	1.292695	0.11695683	1.2911756	263.66095	0	23.854782						1007	16	4	NaN	NaN	NaN	0.54545	1	3928	3928		28.667	4.8161	1	505950	+		11501	8895	6660	6806	9134	9134					0.028858514262878998
KALGVSSS	8	Unmodified						0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	748.419945	747.412668	1.7133	0.0012822	5.7749	0.0043221	7.4882	0.0056043	748.4246052511751	32.732	0.19301	32.732	32.683	32.876	0	552	205	1.2908988	0.12238753	1.2908988	263.2946		24.962433	0.0020855	6.4215E-05	-0.00013841	NaN	28.667	859	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507630	+		11502	8895	6660	6806							0.028858514262878998
KALGVSSS	8	Unmodified						0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	748.419945	747.412668	1.8175	0.0013603	5.634	0.0042166	7.4515	0.0055769	748.4246236387484	32.73	0.36193	32.727	32.655	33.017	-0.0031052	549	196	1.292695	0.11695683	1.2911756	263.66095		23.854782	-0.0020855	-4.1247E-05	0.00013841	NaN	28.667	1007	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505950	+		11503	8895	6660	6806							0.028858514262878998
KALLAYAFS	9	Unmodified	_KALLAYAFS_					0	0	0		nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP	nc|ENSG00000126838|P20742-2|PZP	nc|ENSG00000126838|P20742-2|PZP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5560443592001	1	983.556044	982.548768	1.1751	0.0011558	7.355	0.007234	8.5301	0.0083898	983.5644494548478	31.38	0.072399	31.38	31.38	31.452	0	156	43	1.5263584	0.024795532	1.5263584	309.9739	0	5.0355225						52	4	2	NaN	NaN	NaN	0.47587	1	7979	7979		10.605	3.0646	1	4097.3			11504	2516	6661	6807	9135	9135					0.05679545936948216
KALLHGAG	8	Unmodified	_KALLHGAG_					0	0	0		ENST00000551005.5_1_12:50537518-50537860:-|nuORF	ENST00000551005.5_1_12:50537518-50537860:-|nuORF	ENST00000551005.5_1_12:50537518-50537860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	766.4569990166001	1	766.456999	765.449723	1.9576	0.0015004	-9.8441	-0.0075451	-7.8865	-0.0060446	766.4496376906511	36.35	0.31346	36.35	36.302	36.615	0	513	193	1.3142352	0.11493015	1.3142352	267.94058	0	23.431473						1046	14	5	NaN	NaN	NaN	0.69631	1	4290	4290		19.285	4.2718	1	447690			11505	7543	6662	6808	9136	9136					0.057615677627040895
KALVARVA	8	Unmodified	_KALVARVA_					0	0	0			REV__ENST00000451442.5_3_20:24943788-24944004:-|nuORF	REV__ENST00000451442.5_3_20:24943788-24944004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.27671242075	2	414.276712	826.538872	1.5599	0.00064621	-3.8232	-0.0015839	-2.2634	-0.00093767	414.27494897096705	14.141	0.095838	14.13	14.082	14.178	-0.010673	1443	34	0.7487872	0.02040279	0.7472678	304.91528	0	8.308258						68	5	2	NaN	NaN	NaN	0.84727	1	4986	4986		1.2418	0	1	4675.7	+		11506	12232	6663	6809	9137	9137					0.11866402722228031
KANEPGYNPV	10	Unmodified	_KANEPGYNPV_					0	0	0		ENST00000564020.1_1_16:48530917-48531397:+|nuORF	ENST00000564020.1_1_16:48530917-48531397:+|nuORF	ENST00000564020.1_1_16:48530917-48531397:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7721881488501	2	544.772188	1087.52982	1.2418	0.0006765	-5.3392	-0.0029086	-4.0974	-0.0022321	545.2728541667984	29.232	0.096554	29.232	29.16	29.256	0	1221	37	0.885486	0.022081137	0.885486	359.16553	0	8.956421						96	5	3	NaN	NaN	NaN	0.69717	1	12278	12278		8.2448	3.3351	1	7626.6			11507	7617	6664	6810	9138	9138					-0.0104403542475211
KANPGAWIL	9	Unmodified	_KANPGAWIL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1	ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.27945207495003	2	485.279452	968.544351	1.7688	0.00085837	-1.0157	-0.0004929	0.75312	0.00036548	485.2793643299739	24.116	0.072382	24.103	24.079	24.151	-0.012749	1341	37	0.8117308	0.022172093	0.81021136	329.75485	0	9.007141						78	4	2	NaN	NaN	NaN	0.47587	1	7426	7426		10.605	0	1	9410.8			11508	1385;3036	6665	6811	9139	9139					0.05882081514039328
KANQNSEWE	9	Unmodified	_KANQNSEWE_					0	0	0		ENSG00000283758|ENST00000640449|PMIS2	ENSG00000283758|ENST00000640449|PMIS2	ENSG00000283758|ENST00000640449|PMIS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.1684769510666	3	369.168477	1104.4836	2.5422	0.00093848	0.49603	0.00018312	3.0382	0.0011216	369.50303001722705	17.114	0.04804	17.1	17.1	17.149	-0.013569	1518	46	0.7023569	0.027900577	0.70083743	427.24176	0	16.971863						55	3	3	NaN	NaN	NaN	0.66529	1	12672	12672		1.04	0.32392	1	3542.8			11509	6211	6666	6812	9140	9140					-0.06446100326866144
KAPAAAGA	8	Unmodified	_KAPAAAGA_					0	0	0		ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.3726006851999	1	656.372601	655.365324	1.3771	0.00090387	-1.7709	-0.0011623	-0.3938	-0.00025848	656.3697658054954	56.804	0.12018	56.804	56.78	56.9	0	576	52	1.2765218	0.030572295	1.2765218	261.0201	0	6.251343						152	6	3	NaN	NaN	NaN	0.84876	1	2182	2182		0.39566	0	1	9015.5			11510	5045	6667	6813	9141	9141					0.023856169459349985
KAPAGGNG	8	Unmodified	_KAPAGGNG_					0	0	0		ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000261934|ENST00000573521|PCDHGA9;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000253910|ENST00000522605|PCDHGB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3471142162	1	671.347114	670.339838	0.76738	0.00051518	-2.5953	-0.0017423	-1.8279	-0.0012272	671.3453071176053	41.665	0.19241	41.673	41.577	41.769	0.0082588	741	46	1.1773466	0.027131915	1.1758271	240.63109	0	5.5453186						148	9	3	NaN	NaN	NaN	0.84887	1	2528	2528		0.32989	0	1	8990.5			11511	925;5911;6115;6113;6118	6668	6814	9142	9142					-0.008518575764810521
KAPLRSPN	8	Unmodified	_KAPLRSPN_					0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.515576528	1	882.515577	881.5083	1.8216	0.0016076	2.6925	0.0023762	4.5142	0.0039838	882.517824540169	56.804	0.096146	56.804	56.756	56.852	0	258	112	1.4660252	0.065820575	1.4660252	298.19305	0	13.388062						182	5	2	NaN	NaN	NaN	0.84782	1	5824	5824		0.92586	0.23471	1	12146	+		11512	8970	6669	6815	9143	9143					0.06280624337171048
KAPLRSPN	8	Unmodified						0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	882.515577	881.5083	1.8216	0.0016076	2.6925	0.0023762	4.5142	0.0039838	882.517824540169	56.804	0.096146	56.804	56.756	56.852	0	258	112	1.4660252	0.065820575	1.4660252	298.19305		13.388062	0.013122	-0.0012817	-0.0019064	NaN	0.92586	182	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12146	+		11513	8970	6669	6815							0.06280624337171048
KAPLRSPN	8	Unmodified						0	0	0			REV__nc|ENSG00000105701|Q14318-3|FKBP8	REV__nc|ENSG00000105701|Q14318-3|FKBP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	882.515577	881.5083	-0.2166	-0.00019115	5.9963	0.0052918	5.7797	0.0051007	882.5212293631943	56.779	0.12017	56.778	56.754	56.874	-0.00056458	249	97	1.4713576	0.056892633	1.4698381	299.27762		11.5720825	-0.013122	0.0016339	0.0019064	NaN	0.92586	148	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9104.9	+		11514	8970	6669	6815							0.06280624337171048
KAPVVVIP	8	Unmodified	_KAPVVVIP_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.5447513914002	1	822.544751	821.537475	2.1733	0.0017876	-4.5396	-0.003734	-2.3663	-0.0019464	822.5408091396546	55.701	0.26461	55.701	55.58	55.845	0	405	94	1.3786905	0.055399776	1.3786905	280.74332	0	11.281067						428	12	3	NaN	NaN	NaN	0.84651	1	5038	5038		1.6704	0.2308	1	74217			11515	5745	6670	6816	9144	9144					0.11956768633467618
KAPVVVIP	8	Unmodified						0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.544751	821.537475	-0.3407	-0.00028024	-2.2894	-0.0018832	-2.6301	-0.0021634	822.542860616162	55.698	0.24055	55.698	55.554	55.794	-0.00059128	405	64	1.3786905	0.037516832	1.377171	280.7433		7.6395874	-0.0013985	0.0013843	-0.00075972	NaN	1.6704	200	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22727			11516	5745	6670	6816							0.11956768633467618
KAQIVVHY	8	Unmodified	_KAQIVVHY_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.27945207495	2	479.279452	956.544351	1.3934	0.00066783	-4.7276	-0.0022658	-3.3342	-0.001598	479.2770796244344	29.135	0.2172	29.127	29.079	29.296	-0.0077229	1272	181	0.854179	0.110453725	0.8526596	347.05984	0	44.878235						625	10	3	NaN	NaN	NaN	0.84692	1	7119	7119		1.4396	0.19772	1	97837	+		11517	13130	6671	6817	9145	9145					0.06434081514032641
KARELVAGIH	10	Unmodified	_KARELVAGIH_					0	0	0			REV__ENSG00000134697|ENST00000373062|GNL2	REV__ENSG00000134697|ENST00000373062|GNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.32746490005	2	547.327465	1092.64038	1.2888	0.00070539	-8.5755	-0.0046936	-7.2867	-0.0039882	547.8246415022013	28.532	0.12063	28.523	28.499	28.62	-0.0083485	1233	73	0.87812483	0.04417187	0.8766054	356.1589	0	17.91568						118	6	3	NaN	NaN	NaN	0.77421	1	12203	12203		1.9246	0.99878	1	8107.5	+		11518	9593	6672	6818	9146	9146					0.0977622935411091
KARHQIQSW	9	Unmodified	_KARHQIQSW_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3148888410501	2	577.314889	1152.61522	1.1129	0.00064247	-8.8573	-0.0051134	-7.7444	-0.004471	577.809463443306	28.339	0.14477	28.33	28.257	28.402	-0.0089779	1167	52	0.91857195	0.03122592	0.9170525	372.32233	0	12.656738						108	7	2	NaN	NaN	NaN	0.29681	1	14398	14398		19.118	3.9429	1	11448			11519	2686	6673	6819	9147	9147					0.045021745515668954
KARHQIQSW	9	Unmodified						0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.314889	1152.61522	1.7856	0.0010309	-9.0725	-0.0052377	-7.2868	-0.0042068	577.8103858360132	28.291	0.072369	28.291	28.291	28.363	0	1167	55	0.91857195	0.03306091	0.91857195	372.32233		13.400513	-0.019281	-0.00011013	0.00075972	NaN	19.118	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10367			11520	2686	6673	6819							0.045021745515668954
KASASGIF	8	Unmodified	_KASASGIF_					0	0	0			REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	REV__tr|U7SJJ5|U7SJJ5_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02072PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.4250301862	1	780.42503	779.417754	1.4931	0.0011652	5.0879	0.0039707	6.581	0.005136	780.4284256104604	32.755	0.096535	32.752	32.703	32.8	-0.0031013	585	43	1.2711272	0.02517581	1.2696078	259.07007	0	5.1311035						84	5	2	NaN	NaN	NaN	0.81756	1	4402	4402		6.8632	1.9535	1	6274.3	+		11521	13406	6674	6820	9148	9148					0.0192215528890074
KASGLAAG	8	Unmodified	_KASGLAAG_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000488791.1_1_21:34904635-34906961:-|nuORF;ENST00000497313.5_1_21:34903034-34906961:-|nuORF;ENST00000476524.1_1_21:34903719-34911621:-|nuORF;nc|ENSG00000159131|P22102-2|GART;tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.3831653715	1	674.383165	673.375889	-0.65468	-0.00044151	-1.2897	-0.00086974	-1.9444	-0.0013112	674.3818766625152	55.074	0.14411	55.073	55.049	55.193	-0.00061798	576	241	1.2765218	0.14410865	1.2750024	260.8774	0	29.450867						469	7	3	NaN	NaN	NaN	0.84692	1	2606	2606		1.4396	0	1	86047			11522	4014	6675	6821	9149	9149					0.026135996003745277
KATGSSSI	8	Unmodified	_KATGSSSI_					0	0	0			REV__ENSG00000166529|ENST00000292450|ZSCAN21	REV__ENSG00000166529|ENST00000292450|ZSCAN21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.3992093662001	1	750.399209	749.391933	1.9372	0.0014537	6.1411	0.0046082	8.0783	0.0060619	750.403669322179	23.175	0.12069	23.162	23.138	23.258	-0.013294	552	46	1.2908988	0.026941061	1.2893794	263.28204	0	5.49469						115	6	2	NaN	NaN	NaN	0.82797	1	3965	3965		5.4659	0.55612	1	11079	+		11523	10437	6676	6822	9150	9150					0.007212610466240221
KAVDAEPVL	9	Unmodified	_KAVDAEPVL_					0	0	0		ENST00000474562.1_1_1:115321747-115323026:-|nuORF;ENST00000462123.5_1_1:115321747-115323144:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000474562.1_1_1:115321747-115323026:-|nuORF	ENST00000474562.1_1_1:115321747-115323026:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.26875000289994	2	471.26875	940.522947	1.9289	0.00090902	-5.2643	-0.0024809	-3.3354	-0.0015719	471.2670063903427	18.173	0.095991	18.173	18.149	18.245	0	1356	70	0.8024889	0.042512596	0.8024889	326.1364	0	17.277374						241	5	4	NaN	NaN	NaN	0.03618	1	6832	6832		52.78	8.1412	1	59945			11524	579	6677	6823	9151	9151					0.05030651694653443
KAVDAEPVL	9	Unmodified	_KAVDAEPVL_					0	0	0		ENST00000474562.1_1_1:115321747-115323026:-|nuORF;ENST00000462123.5_1_1:115321747-115323144:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000474562.1_1_1:115321747-115323026:-|nuORF	ENST00000474562.1_1_1:115321747-115323026:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.26875000289994	2	471.26875	940.522947	1.0019	0.00047219	-4.1457	-0.0019538	-3.1438	-0.0014816	471.2677847107903	18.218	0.096003	18.204	18.156	18.252	-0.01395	1356	61	0.8024889	0.036969543	0.8009695	326.1364	0	15.024628						235	5	4	NaN	NaN	NaN	0.048656	1	6693	6693		47.482	10.179	1	61190			11525	579	6677	6823	9152	9152					0.05030651694653443
KAVPPGLV	8	Unmodified	_KAVPPGLV_					0	0	0		nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-4|PATJ	nc|ENSG00000132849|Q8NI35-4|PATJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.4978011988001	1	780.497801	779.490525	1.8656	0.0014561	-11.654	-0.0090962	-9.7888	-0.0076401	780.4871605917298	56.828	0.024017	56.828	56.828	56.852	0	411	43	1.3751161	0.025023222	1.3751161	280.2638	0	5.1000366						54	2	2	NaN	NaN	NaN	0.84651	1	4483	4483		1.6704	1.2747	1	6208.8			11526	2797	6678	6824	9153	9153					0.09195909082325215
KAYLAPHAL	9	Unmodified	_KAYLAPHAL_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5672777475	1	983.567278	982.560001	1.3457	0.0013236	-2.5958	-0.0025531	-1.2501	-0.0012295	983.5640958000577	31.839	0.048267	31.839	31.815	31.863	0	234	79	1.4802408	0.04616642	1.4802408	300.60834	0	9.375519						111	3	2	NaN	NaN	NaN	0.53206	1	7980	7980		8.2903	0.70269	1	11068			11527	7410	6679	6825	9154	9154					0.06802368031083006
KAYLAPHAL	9	Unmodified						0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.567278	982.560001	1.0237	0.0010069	-0.17811	-0.00017519	0.84562	0.00083172	983.5654638715789	31.838	0.072395	31.833	31.809	31.881	-0.0044155	222	79	1.4873441	0.046171308	1.4858247	302.05087		9.376495	-0.0027309	0.0010706	0.0027919	NaN	8.2903	116	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11034			11528	7410	6679	6825							0.06802368031083006
KCDCYHNYIYS	11	Unmodified	_KCDCYHNYIYS_					0	0	0			REV__ENST00000505692.1_1_4:122780107-122782831:-|nuORF	REV__ENST00000505692.1_1_4:122780107-122782831:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.1935288020667	3	470.193529	1407.55876	1.6095	0.00075678	4.3138	0.0020283	5.9233	0.0027851	470.1953202602537	28.17	0.048275	28.17	28.146	28.194	0	1296	25	0.8394264	0.014759064	0.8394264	509.26566	0	8.95401						41	3	2	NaN	NaN	NaN	0.77797	1	20121	20121		0.1369	0	1	2977.2	+		11529	9740	6680	6826	9155	9155					-0.12872002182280085
KCEDLIPEYF	10	Unmodified	_KCEDLIPEYF_					0	0	0		tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1	tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1	tr|U7SXW9|U7SXW9_FUSNUChaperoneproteinHtpGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=htpGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.79701430335	2	628.797014	1255.57948	1.8513	0.0011641	-8.9466	-0.0056256	-7.0952	-0.0044615	628.7913934416978	25.491	0.19307	25.479	25.382	25.575	-0.012011	1149	70	0.92958635	0.0422104	0.9280669	376.4212	0	17.092438						422	9	4	NaN	NaN	NaN	0.507	1	17137	17137		19.164	1.3646	1	93527			11530	13915	6681	6827	9156	9156					-0.03809088530988447
KCEECDNVYI	10	Unmodified	_KCEECDNVYI_					0	0	0		ENSG00000180257|ENST00000444460|ZNF816	ENSG00000180257|ENST00000444460|ZNF816	ENSG00000180257|ENST00000444460|ZNF816	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.8388630553	3	405.838863	1214.49476	1.1766	0.00047749	7.3116	0.0029673	8.4881	0.0034448	405.84192040286604	30.463	0.096521	30.463	30.439	30.535	0	1473	28	0.7302302	0.016709447	0.7302302	443.70163	0	10.153015						53	5	2	NaN	NaN	NaN	0.76892	1	16831	16831		1.3696	0	1	3700.3			11531	5187	6682	6828	9157	9157					-0.10390782339231919
KCIHMSRSFP	10	Unmodified	_KCIHMSRSFP_					0	0	0			REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.29953559005	2	603.299536	1204.58452	0.83066	0.00050114	7.2159	0.0043534	8.0466	0.0048545	603.3038140071907	22.091	0.14465	22.077	22.053	22.197	-0.013731	1137	55	0.9369253	0.033025324	0.93540585	379.5676	0	13.379242						124	7	2	NaN	NaN	NaN	0.63397	1	15946	15946		12.57	0.83085	1	12691	+		11532	12423	6683	6829	9158	9158					-0.009590631493665569
KCINGKMCYVQ	11	Unmodified	_KCINGKMCYVQ_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.8063361669	2	643.806336	1285.59812	1.6784	0.0010806	-5.5203	-0.003554	-3.8419	-0.0024734	643.8042043470748	20.405	0.072088	20.405	20.381	20.453	0	1128	55	0.9424274	0.033014596	0.9424274	381.52405	0	13.365326						138	4	3	NaN	NaN	NaN	0.7686	1	18527	18527		0.51604	0	1	10904			11533	5493	6684	6830	9159	9159					-0.03325573432425699
KCIQCFSPEL	10	Unmodified	_KCIQCFSPEL_					0	0	0		ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.28047716965	2	584.280477	1166.5464	1.1455	0.00066931	-1.8321	-0.0010705	-0.6866	-0.00040116	584.2794266943112	21.055	0.14445	21.041	20.969	21.113	-0.014086	1245	61	0.87076044	0.036813855	0.869241	352.89316	0	14.919556						143	7	2	NaN	NaN	NaN	0.71559	1	14822	14822		6.9844	1.2902	1	19150			11534	2435	6685	6831	9160	9160					-0.03020993854693188
KCKERWLLNDE	11	Unmodified	_KCKERWLLNDE_					0	0	0			REV__FBXW7|p.I384Wfs*2|1|0.21|ENSG00000109670|chr4:152329739-152329758|CAAAACTGTAAGCATGTGAT/-|frameshift_variant	REV__FBXW7|p.I384Wfs*2|1|0.21|ENSG00000109670|chr4:152329739-152329758|CAAAACTGTAAGCATGTGAT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.5783710711001	3	478.578371	1432.71328	2.034	0.00097344	-4.4289	-0.0021196	-2.3948	-0.0011461	478.5764159143508	18.434	0.096079	18.42	18.372	18.468	-0.01395	1398	37	0.77658504	0.022220135	0.7750656	471.06055	0	13.478302						87	5	2	NaN	NaN	NaN	0.76251	1	19327	19327		3.3044	0	1	11872	+		11535	9061	6686	6832	9161	9161					0.014235702946052697
KCKKKKRRR	9	Unmodified	_KCKKKKRRR_					0	0	0		ENST00000406027.2_1_2:216946734-216946833:+|nuORF	ENST00000406027.2_1_2:216946734-216946833:+|nuORF	ENST00000406027.2_1_2:216946734-216946833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1230.8051738034999	1	1230.80517	1229.7979	1.4847	0.0018274	-1.4558	-0.0017918	0.028895	3.5564E-05	1230.804671650432	40.27	0.096214	40.276	40.276	40.372	0.0060463	54	49	1.5864743	0.028244972	1.5849549	321.2849	0	5.7200317						111	5	2	NaN	NaN	NaN	0.67818	1	16546	16546		1.072	0	1	8449.8			11536	6846	6687	6833	9162	9162					0.19219030412500615
KCNYVLCVL	9	Unmodified	_KCNYVLCVL_					0	0	0		ENST00000544246.5_1_13:67804114-67804252:-|nuORF	ENST00000544246.5_1_13:67804114-67804252:-|nuORF	ENST00000544246.5_1_13:67804114-67804252:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7748306857501	2	527.774831	1053.53511	1.7011	0.00089782	-4.0191	-0.0021212	-2.3179	-0.0012233	527.7729385889171	25.057	0.19304	25.057	24.96	25.153	0	1275	85	0.85233563	0.051617444	0.85233563	345.85876	0	20.94522						326	9	3	NaN	NaN	NaN	0.36492	1	10794	10794		15.175	5.4294	1	54353			11537	7511	6688	6834	9163	9163					0.01048228841841592
KCPCHRHI	8	Unmodified	_KCPCHRHI_					0	0	0			REV__ENSG00000128536|ENST00000317716|CDHR3	REV__ENSG00000128536|ENST00000317716|CDHR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4869357115	1	993.486936	992.479659	1.8741	0.0018619	0.24072	0.00023915	2.1149	0.0021011	993.4898953099237	26.795	0.26583	26.795	26.77	27.036	0	255	76	1.4678029	0.044445038	1.4678029	298.0412	0	9.024689						301	12	2	NaN	NaN	NaN	0.76633	1	8308	8308		13.737	0.73422	1	55403	+		11538	9448	6689	6835	9164	9164					-0.01688139835266611
KCSSFFVI	8	Unmodified	_KCSSFFVI_					0	0	0			REV__DDX10|p.V677*|1|0.3|ENSG00000178105|chr11:108838502-108838502|A/-|frameshift_variant	REV__DDX10|p.V677*|1|0.3|ENSG00000178105|chr11:108838502-108838502|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.7413138319001	2	465.741314	929.468075	1.0737	0.00050008	6.1682	0.0028728	7.242	0.0033729	465.7441762395224	23.971	0.16886	23.971	23.947	24.116	0	1365	70	0.7969414	0.042517245	0.7969414	323.9373	0	17.282227						285	8	2	NaN	NaN	NaN	0.67765	1	6591	6591		20.449	5.4358	1	44189	+		11539	8306	6690	6836	9165	9165					0.0005194162241650702
KCSSSCLL	8	Unmodified	_KCSSSCLL_					0	0	0			REV__ENST00000368775.3_1_1:152692215-152692473:+|nuORF	REV__ENST00000368775.3_1_1:152692215-152692473:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.3953863167002	1	840.395386	839.38811	1.005	0.00084458	2.1248	0.0017857	3.1298	0.0026302	840.3984025286408	41.089	0.096119	41.089	41.065	41.161	0	465	64	1.3429124	0.037604928	1.3429124	273.36212	0	7.6548157						140	5	2	NaN	NaN	NaN	0.8439	1	5260	5260		3.1533	0	1	12088	+		11540	11874	6691	6837	9166	9166					-0.03800868043083483
KCTFRYLDW	9	Unmodified	_KCTFRYLDW_					0	0	0			REV__ENST00000303575.8_1_14:75598190-75598304:-|nuORF	REV__ENST00000303575.8_1_14:75598190-75598304:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3000585188	2	616.300059	1230.58556	1.0496	0.00064684	-8.8244	-0.0054385	-7.7748	-0.0047916	616.7967307408569	25.105	0.24129	25.093	24.972	25.214	-0.012011	1191	91	0.90387505	0.055095673	0.9023556	366.0907	0	22.315063						245	11	2	NaN	NaN	NaN	0.35794	1	16555	16555		15.463	3.414	1	32291	+		11541	11668	6692	6838	9167	9167					-0.020505255087982732
KDDTPLFIPSN	11	Unmodified	_KDDTPLFIPSN_					0	0	0			REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8193353067	2	623.819335	1245.62412	1.9607	0.0012231	3.6747	0.0022923	5.6354	0.0035155	623.821991106325	15.27	0.2883	15.27	15.222	15.51	0	1191	76	0.90387505	0.045960188	0.90387505	366.0416	0	18.612457						817	13	5	NaN	NaN	NaN	0.021881	1	17655	17655		61.199	11.805	1	403520	+		11542	10810	6693	6839	9168	9168					0.011130586067110926
KDDTPLFIPSN	11	Unmodified						0	0	0			REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.819335	1245.62412	1.9607	0.0012231	3.6747	0.0022923	5.6354	0.0035155	623.821991106325	15.27	0.2883	15.27	15.222	15.51	0	1191	76	0.90387505	0.045960188	0.90387505	366.0416		18.612457	0.0068292	-0.00015146	0.00075972	NaN	61.199	817	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403520	+		11543	10810	6693	6839							0.011130586067110926
KDDTPLFIPSN	11	Unmodified						0	0	0			REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.819335	1245.62412	1.5656	0.00097666	3.8566	0.0024058	5.4222	0.0033825	623.8217676387474	15.268	0.33581	15.256	15.208	15.544	-0.012202	1191	76	0.90387505	0.04595518	0.9023556	366.0416		18.610443	-0.0068292	7.5587E-05	-0.00075972	NaN	61.199	852	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415130	+		11544	10810	6693	6839							0.011130586067110926
KDEATEYI	8	Unmodified	_KDEATEYI_					0	0	0		ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENST00000462680.5_1_1:153955646-153957199:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4571181755999	1	968.457118	967.449842	1.5352	0.0014868	1.5422	0.0014936	3.0774	0.0029803	968.4583055910736	24.647	0.12061	24.647	24.598	24.719	0	291	55	1.446459	0.032036066	1.446459	293.81134	0	6.507324						113	6	2	NaN	NaN	NaN	0.50906	1	7536	7536		30.61	1.0118	1	11212			11545	7086	6694	6840	9169	9169					-0.03518521818625686
KDEDNTKL	8	Unmodified	_KDEDNTKL_					0	0	0			REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4789162501999	1	962.478916	961.47164	1.5982	0.0015383	3.9753	0.0038262	5.5736	0.0053644	962.4839342857974	21.73	0.19264	21.73	21.657	21.85	0	309	49	1.435777	0.028488636	1.435777	291.667	0	5.787262						108	9	2	NaN	NaN	NaN	0.54116	1	7367	7367		28.896	1.5994	1	15446	+		11546	10621	6695	6841	9170	9170					-0.010637170700647403
KDEFYHEETE	10	Unmodified	_KDEFYHEETE_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.8543351038667	3	442.854335	1325.54118	1.9072	0.00084461	1.119	0.00049554	3.0262	0.0013401	442.8549811441102	13.709	0.31229	13.709	13.565	13.877	0	1476	103	0.72837335	0.06306654	0.72837335	442.15723	0	38.284393						728	14	4	NaN	NaN	NaN	0.6772	1	19174	19174		5.2847	0.66721	1	75026	+		11547	11178	6696	6842	9171	9171					-0.10857302911927036
KDFLMKQQA	9	Unmodified	_KDFLMKQQA_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7946090001501	2	554.794609	1107.57467	1.736	0.00096314	-8.3334	-0.0046233	-6.5974	-0.0036602	554.790064225485	22.935	0.19256	22.935	22.911	23.103	0	1224	88	0.883646	0.053382993	0.883646	358.33804	0	21.64798						343	9	3	NaN	NaN	NaN	0.44082	1	13181	13181		12.049	0.87837	1	66867			11548	3790	6697	6843	9172	9172					0.025180721169363096
KDFNFQLKT	9	Unmodified	_KDFNFQLKT_					0	0	0		ENST00000460723.5_1_22:32015600-32017569:-|nuORF;ENST00000473770.5_1_22:32015600-32017204:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	ENST00000460723.5_1_22:32015600-32017569:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662	2	570.806031	1139.59751	1.0101	0.00057654	-6.1008	-0.0034824	-5.0908	-0.0029058	570.8030161758909	31.186	0.28961	31.181	30.964	31.253	-0.0050716	1194	100	0.902037	0.060719907	0.9005176	365.66965	0	24.614746						530	13	4	NaN	NaN	NaN	0.31471	1	13966	13966		17.97	0	1	98372			11549	7076	6698	6844	9173	9173					0.033294145060153824
KDFPAVGLK	9	Unmodified	_KDFPAVGLK_					0	0	0		nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.78710993155005	2	487.78711	973.559667	1.7124	0.00083529	5.9522	0.0029034	7.6646	0.0037387	487.7902873533547	28.918	0.14479	28.918	28.846	28.991	0	1299	100	0.8375814	0.06084478	0.8375814	340.23175	0	24.715576						415	7	3	NaN	NaN	NaN	0.67312	1	7715	7715		1.5054	0.065836	1	56896			11550	1598	6699	6845	9174	9174					0.07182948311242399
KDGHKDPLL	9	Unmodified	_KDGHKDPLL_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5629206511	1	1022.56292	1021.55564	1.5373	0.0015719	0.77074	0.00078813	2.308	0.0023601	1022.5644845143964	24.526	0.072372	24.514	24.465	24.538	-0.012392	189	109	1.5068626	0.06390238	1.5053432	305.85306	0	12.9704895						197	4	2	NaN	NaN	NaN	0.44082	1	9247	9247		12.049	1.4437	1	21145			11551	4783	6700	6846	9175	9175					0.04572858817505221
KDGHKDPLL	9	Unmodified						0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1022.56292	1021.55564	2.0498	0.002096	-0.47874	-0.00048954	1.5711	0.0016065	1022.562548322109	24.502	0.096405	24.502	24.454	24.55	0	189	103	1.5068626	0.060352206	1.5068626	305.85306		12.249908	-0.0058101	-0.00049852	0.00075972	NaN	12.049	219	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21039			11552	4783	6700	6846							0.04572858817505221
KDGQQLSRG	9	Unmodified	_KDGQQLSRG_					0	0	0			REV__ENST00000390308.2_1_22:23054798-23054876:+|nuORF	REV__ENST00000390308.2_1_22:23054798-23054876:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.76215477880004	2	494.762155	987.509757	1.7618	0.00087166	1.7154	0.00084872	3.4772	0.0017204	494.76194763762203	14.213	0.048064	14.213	14.189	14.237	0	1326	67	0.8209676	0.040622413	0.8209676	333.41754	0	16.497894						68	3	2	NaN	NaN	NaN	0.27507	1	8125	8125		20.513	1.395	1	22565	+		11553	11976	6701	6847	9176	9176					0.015502136352893103
KDGTYAVTYVP	11	Unmodified	_KDGTYAVTYVP_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3086034449	2	607.308603	1212.60265	1.321	0.00080228	-1.3836	-0.00084026	-0.062528	-3.7974E-05	607.3080569912063	28.46	0.14483	28.46	28.436	28.581	0	1185	67	0.90755045	0.040412188	0.90755045	367.63974	0	16.370575						198	7	3	NaN	NaN	NaN	0.67772	1	16795	16795		8.9191	0	1	27741			11554	2992	6702	6848	9177	9177					0.004856735779867449
KDGVGQPGLPG	11	Unmodified	_KDGVGQPGLPG_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7747308378	2	512.774731	1023.53491	1.5697	0.00080491	-1.144	-0.00058662	0.42571	0.00021829	512.774118389247	17.642	0.14383	17.628	17.604	17.748	-0.013786	1326	58	0.8209676	0.035077274	0.81944823	333.2563	0	14.238983						154	7	3	NaN	NaN	NaN	0.6085	1	9328	9328		13.463	0.46021	1	14539			11555	5283	6703	6849	9178	9178					0.02408268437852712
KDKGQDPDA	9	Unmodified	_KDKGQDPDA_					0	0	0		ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.2328958128499	2	487.232896	972.451239	1.6397	0.00079893	-5.2129	-0.0025399	-3.5732	-0.001741	487.23034678939854	34.299	0.07225	34.298	34.274	34.346	-0.0012474	1323	34	0.8228144	0.02031231	0.82129496	334.23865	0	8.25116						52	4	2	NaN	NaN	NaN	0.59509	1	7520	7520		5.6942	0.2283	1	4365.4			11556	6214	6704	6850	9179	9179					-0.03608887729865273
KDKNKIYFKYN	11	Unmodified	_KDKNKIYFKYN_					0	0	0		tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.8984512949501	2	730.898451	1459.78235	1.3093	0.00095694	3.2531	0.0023777	4.5624	0.0033346	730.9004171001927	29.474	0.096596	29.474	29.425	29.522	0	1023	28	1.0064877	0.016442478	1.0064877	406.9404	0	6.6479797						73	5	3	NaN	NaN	NaN	0.77378	1	20427	20427		1.3312	0.15435	1	3936.4			11557	13775	6705	6851	9180	9180					0.07084977585805063
KDLELQRSFA	10	Unmodified	_KDLELQRSFA_					0	0	0		HAUS8|p.R309Q|1|0.16|ENSG00000131351|chr19:17052828-17052828|C/T|missense_variant	HAUS8|p.R309Q|1|0.16|ENSG00000131351|chr19:17052828-17052828|C/T|missense_variant	HAUS8|p.R309Q|1|0.16|ENSG00000131351|chr19:17052828-17052828|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.8874219487334	3	402.887422	1205.64044	1.4466	0.00058282	-1.7519	-0.00070581	-0.30527	-0.00012299	402.8867889245781	17.453	0.095917	17.453	17.429	17.525	0	1491	40	0.7190863	0.024151623	0.7190863	436.96643	0	14.676178						92	5	2	NaN	NaN	NaN	0.58645	1	16631	16631		16.659	4.3523	1	10201			11558	7812	6706	6852	9181	9181					0.04584184563486815
KDLEPSLI	8	Unmodified	_KDLEPSLI_					0	0	0			REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	REV__KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5193245019001	1	914.519325	913.512048	1.6626	0.0015205	-8.2759	-0.0075685	-6.6133	-0.006048	914.5132478884606	27.181	0.21715	27.181	27.109	27.326	0	348	100	1.412609	0.058835983	1.412609	287.17337	0	11.960968						341	10	3	NaN	NaN	NaN	0.3434	1	6299	6299		39.459	7.006	1	75496	+		11559	8509	6707	6853	9182	9182					0.05183249320384675
KDLGGGFE	8	Unmodified	_KDLGGGFE_					0	0	0		nc|ENSG00000114248|Q6UY01-3|LRRC31;nc|ENSG00000114248|Q6UY01-4|LRRC31;nc|ENSG00000114248|Q6UY01-2|LRRC31;ENSG00000114248|ENST00000316428|LRRC31	nc|ENSG00000114248|Q6UY01-3|LRRC31	nc|ENSG00000114248|Q6UY01-3|LRRC31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	822.3992093662	1	822.399209	821.391933	1.3181	0.001084	5.5581	0.004571	6.8762	0.005655	822.4029516634562	30.076	0.26547	30.07	30.021	30.287	-0.0064087	453	145	1.3500742	0.08604133	1.3485547	274.91693	0	17.52069						600	12	4	NaN	NaN	NaN	0.69898	1	4925	4925		19.118	3.6556	1	117570			11560	1949	6708	6854	9183	9183					-0.02590738953381333
KDLINYVW	8	Unmodified	_KDLINYVW_					0	0	0			REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7845672426	2	525.784567	1049.55458	1.0706	0.0005629	-8.6297	-0.0045373	-7.5591	-0.0039744	525.7800082191461	31.065	0.24133	31.06	30.964	31.205	-0.0050716	1266	88	0.85786515	0.05344075	0.8563457	348.1196	0	21.686127						386	11	3	NaN	NaN	NaN	0.75682	1	10399	10399		15.013	4.4079	1	67752	+		11561	9073	6709	6855	9184	9184					0.031786444485987886
KDLNAYLQL	9	Unmodified	_KDLNAYLQL_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.30058144755	2	539.300581	1076.58661	1.8997	0.0010245	-2.4003	-0.0012945	-0.5006	-0.00026997	539.2992691674066	21.802	0.14451	21.802	21.754	21.898	0	1233	49	0.87812483	0.029451072	0.87812483	356.225	0	11.947266						244	7	4	NaN	NaN	NaN	0.1507	1	11837	11837		28.495	8.0466	1	38633			11562	775	6710	6856	9185	9185					0.05138012131760661
KDLWLSCALH	10	Unmodified	_KDLWLSCALH_					0	0	0		nc|ENSG00000088305|Q9UBC3-5|DNMT3B	nc|ENSG00000088305|Q9UBC3-5|DNMT3B	nc|ENSG00000088305|Q9UBC3-5|DNMT3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.87434785613334	3	395.874348	1184.60121	1.648	0.00065242	-2.6236	-0.0010386	-0.97557	-0.0003862	395.87359222215156	17.306	0.26395	17.292	17.196	17.46	-0.013569	1452	61	0.74322224	0.037118077	0.7417028	451.7237	0	22.560028						271	12	4	NaN	NaN	NaN	0.67523	1	15392	15392		5.0169	0.39941	1	43530			11563	7914	6711	6857	9186	9186					0.016297610082574465
KDPDALLKH	9	Unmodified	_KDPDALLKH_					0	0	0		ITGAL|p.R666Pfs*34|1|0.1|ENSG00000005844|chr16:30499341-30499341|G/-|frameshift_variant;nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	ITGAL|p.R666Pfs*34|1|0.1|ENSG00000005844|chr16:30499341-30499341|G/-|frameshift_variant	ITGAL|p.R666Pfs*34|1|0.1|ENSG00000005844|chr16:30499341-30499341|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.79292359095	2	518.792924	1035.57129	1.2932	0.0006709	-1.1615	-0.00060259	0.13167	6.8311E-05	518.7922841410341	33.068	0.072342	33.066	33.042	33.114	-0.0024796	1317	40	0.8265074	0.02400285	0.82498795	335.45328	0	9.742004						60	4	2	NaN	NaN	NaN	0.64666	1	9817	9817		3.5698	0.78459	1	4924.9			11564	333	6712	6858	9187	9187					0.05493145334548899
KDQLISEL	8	Unmodified	_KDQLISEL_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.5251381613001	1	945.525138	944.517862	1.3585	0.0012845	5.9056	0.0055839	7.2641	0.0068684	945.5321736355504	28.073	0.072388	28.064	28.04	28.112	-0.0089779	279	55	1.4535767	0.032025933	1.4520572	295.35773	0	6.5074463						83	4	2	NaN	NaN	NaN	0.77891	1	6797	6797		12.049	0	1	9098			11565	1061	6713	6859	9188	9188					0.04338347832049294
KDQTNEELPEI	11	Unmodified	_KDQTNEELPEI_					0	0	0		ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.32243910165	2	658.322439	1314.63033	0.93062	0.00061265	1.3594	0.00089492	2.29	0.0015076	658.3236312854103	30.293	0.38605	30.287	30.07	30.456	-0.0064106	1143	76	0.9332562	0.04585606	0.93173677	377.72253	0	18.559631						340	17	3	NaN	NaN	NaN	0.14414	1	18188	18188		35.523	1.6156	1	35014			11566	6016	6714	6860	9189	9189					-0.014404679524204766
KDQTNEELPEI	11	Unmodified						0	0	0		ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	658.322439	1314.63033	1.5122	0.00099548	0.45971	0.00030264	1.9719	0.0012981	658.3235090387716	30.27	0.21718	30.27	30.101	30.318	0	1140	70	0.93509084	0.04219216	0.93509084	378.4651		17.076721	-0.0083732	-0.00074345	0.001677	NaN	35.523	224	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28091			11567	6016	6714	6860							-0.014404679524204766
KDRPDWTPWRP	11	Unmodified	_KDRPDWTPWRP_					0	0	0			REV__ENST00000510260.5_1_1:22985966-22987332:+|nuORF	REV__ENST00000510260.5_1_1:22985966-22987332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.2493537203666	3	485.249354	1452.72623	1.561	0.0007575	-10.086	-0.0048941	-8.5247	-0.0041366	485.24446140006387	29.401	0.28964	29.401	29.305	29.594	0	1350	37	0.80618626	0.022184074	0.80618626	488.95175	0	13.454651						289	13	4	NaN	NaN	NaN	0.67772	1	20391	20391		9.0037	3.8376	1	31824	+		11568	12554	6715	6861	9190	9190					0.017977694689761847
KDRPDWTPWRP	11	Unmodified						0	0	0			REV__ENST00000510260.5_1_1:22985966-22987332:+|nuORF	REV__ENST00000510260.5_1_1:22985966-22987332:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	485.249354	1452.72623	1.561	0.0007575	-10.086	-0.0048941	-8.5247	-0.0041366	485.24446140006387	29.401	0.28964	29.401	29.305	29.594	0	1350	37	0.80618626	0.022184074	0.80618626	488.95175		13.454651	-0.032278	4.3747E-05	0.00075972	NaN	9.0037	289	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31824	+		11569	12554	6715	6861							0.017977694689761847
KDSEPRTK	8	Unmodified	_KDSEPRTK_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.7590807736	2	480.759081	959.503609	1.6345	0.0007858	1.1918	0.00057296	2.8263	0.0013588	480.76014697678045	14.309	0.12012	14.309	14.261	14.381	0	1569	46	0.6707121	0.027946115	0.6707121	272.5038	0	11.354248						137	6	3	NaN	NaN	NaN	0.72013	1	7328	7328		17.799	2.6236	1	16442			11570	1537	6716	6862	9191	9191					0.022236954037566647
KDYIQEYLTL	10	Unmodified	_KDYIQEYLTL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.22733274509994	3	429.227333	1284.66017	1.136	0.00048761	0.10634	4.5643E-05	1.2424	0.00053326	429.22701792268856	20.285	0.16848	20.271	20.222	20.391	-0.014141	1434	46	0.75435036	0.027809858	0.7528309	458.0766	0	16.887451						156	8	3	NaN	NaN	NaN	0.74182	1	17690	17690		2.4611	0.22218	1	13123			11571	13662	6717	6863	9192	9192					0.02922515783552626
KDYYDMYEPE	10	Unmodified	_KDYYDMYEPE_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.5165544777666	3	451.516554	1351.52783	1.7493	0.00078985	-4.8809	-0.0022038	-3.1316	-0.001414	451.8486705232527	26.481	0.024145	26.481	26.481	26.505	0	1419	25	0.76361835	0.014826298	0.76361835	463.46082	0	8.998474						28	2	2	NaN	NaN	NaN	0.77967	1	19556	19556		0.18432	0.047414	1	1563.6			11572	1075	6718	6864	9193	9193					-0.13386877015545906
KEAHYFSF	8	Unmodified	_KEAHYFSF_					0	0	0		ENST00000261483.4_1_5:109202701-109202797:+|nuORF	ENST00000261483.4_1_5:109202701-109202797:+|nuORF	ENST00000261483.4_1_5:109202701-109202797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7454420821	2	514.745442	1027.47633	1.4188	0.0007303	-2.5976	-0.0013371	-1.1788	-0.00060678	514.7438315064643	31.694	0.21722	31.694	31.621	31.839	0	1281	58	0.84864825	0.03504312	0.84864825	344.4752	0	14.224396						257	10	3	NaN	NaN	NaN	0.76406	1	9655	9655		14.042	1.4537	1	61098			11573	6303	6719	6865	9194	9194					-0.0363078813663833
KEAMIEYQS	9	Unmodified	_KEAMIEYQS_					0	0	0			REV__CON__P19001	REV__CON__P19001	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7604318318	2	549.760432	1097.50631	0.93077	0.0005117	-1.1152	-0.00061312	-0.18448	-0.00010142	549.7594762999399	32.032	0.048241	32.032	32.032	32.08	0	1254	46	0.8652351	0.027635753	0.8652351	350.91153	0	11.208191						55	3	2	NaN	NaN	NaN	0.66822	1	12732	12732		1.9246	0	1	5850.8	+	+	11574	8265	6720	6866	9195	9195					-0.03854217253592651
KEAMIEYQS	9	Unmodified						0	0	0			REV__CON__P19001	REV__CON__P19001	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.760432	1097.50631	0.93077	0.0005117	-1.1152	-0.00061312	-0.18448	-0.00010142	549.7594762999399	32.032	0.048241	32.032	32.032	32.08	0	1254	46	0.8652351	0.027635753	0.8652351	350.91153		11.208191	0	0	0	NaN	1.9246	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5850.8	+	+	11575	8265	6720	6866							-0.03854217253592651
KEDIPGRHSY	10	Unmodified	_KEDIPGRHSY_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.2035215422334	3	401.203522	1200.58874	1.367	0.00054845	-1.5727	-0.00063097	-0.20567	-8.2517E-05	401.20284393591555	12.004	0.26409	12.004	11.956	12.22	0	1437	55	0.7524962	0.03338456	0.7524962	457.29034	0	20.28772						328	12	3	NaN	NaN	NaN	0.0094358	1	16494	16494		60.57	44.784	1	69896			11576	4255	6721	6867	9196	9196					-0.0035355913041712483
KEDIPGRHSY	10	Unmodified	_KEDIPGRHSY_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.2035215422334	3	401.203522	1200.58874	1.1688	0.00046893	-0.15469	-6.2064E-05	1.0141	0.00040687	401.2032738773514	12.102	0.35994	12.094	11.974	12.334	-0.0081863	1440	49	0.7506418	0.029668689	0.7491224	456.16342	0	18.029602						350	16	4	NaN	NaN	NaN	0.23201	1	15847	15847		32.149	17.7	1	65801			11577	4255	6721	6867	9197	9197					-0.0035355913041712483
KEDYEKQI	8	Unmodified	_KEDYEKQI_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7665714547	2	526.766571	1051.51859	1.2648	0.00066624	-10.402	-0.0054796	-9.1375	-0.0048133	526.7613211691552	19.827	0.2165	19.813	19.693	19.909	-0.014141	1278	52	0.85049206	0.031340897	0.8489726	345.11926	0	12.717743						143	10	2	NaN	NaN	NaN	0.82212	1	10467	10467		6.2502	0.15988	1	16455	+		11578	9594	6722	6868	9198	9198					-0.005108575189069597
KEDYEKQI	8	Unmodified						0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.766571	1051.51859	1.6973	0.00089406	-12.71	-0.006695	-11.012	-0.005801	526.7592730280874	19.828	0.19225	19.828	19.732	19.924	0	1278	49	0.85049206	0.029498875	0.85049206	345.11926		11.970306	0.0074654	-0.0013099	0.00075972	NaN	6.2502	153	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16441	+		11579	9594	6722	6868							-0.005108575189069597
KEDYEKQI	8	Unmodified						0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.766571	1051.51859	1.2648	0.00066624	-10.402	-0.0054796	-9.1375	-0.0048133	526.7613211691552	19.827	0.2165	19.813	19.693	19.909	-0.014141	1278	52	0.85049206	0.031340897	0.8489726	345.11926		12.717743	-0.0074654	0.001121	-0.00075972	NaN	6.2502	143	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16455	+		11580	9594	6722	6868							-0.005108575189069597
KEEAAERYL	9	Unmodified	_KEEAAERYL_					0	0	0		ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7852955241	2	554.785296	1107.55604	1.2988	0.00072053	3.5123	0.0019486	4.811	0.0026691	554.7876531753592	22.717	0.04826	22.704	22.655	22.704	-0.01354	1194	85	0.902037	0.051494837	0.9005176	365.79602	0	20.882324						106	3	2	NaN	NaN	NaN	0.56671	1	12807	12807		6.8632	0.77288	1	20723			11581	5679	6723	6869	9199	9199					0.006562337466903045
KEEESKLTL	9	Unmodified	_KEEESKLTL_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7953288941501	2	538.795329	1075.5761	1.9176	0.0010332	-2.4424	-0.0013159	-0.52475	-0.00028273	539.2962217736172	16.925	0.11987	16.925	16.854	16.973	0	1251	52	0.8670771	0.031300247	0.8670771	351.7475	0	12.697571						81	6	2	NaN	NaN	NaN	0.38313	1	11803	11803		14.425	0.38343	1	6699.2	+		11582	8345	6724	6870	9200	9200					0.0413398468667765
KEEESKLTL	9	Unmodified						0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.795329	1075.5761	1.9176	0.0010332	-2.4424	-0.0013159	-0.52475	-0.00028273	539.2962217736172	16.925	0.11987	16.925	16.854	16.973	0	1251	52	0.8670771	0.031300247	0.8670771	351.7475		12.697571	-0.051616	-0.0025676	-0.00016117	NaN	14.425	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6699.2	+		11583	8345	6724	6870							0.0413398468667765
KEEESKLTL	9	Unmodified						0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.795329	1075.5761	1.569	0.00084535	2.2879	0.0012327	3.8568	0.002078	538.7957997072837	17.042	0.14391	17.029	16.933	17.077	-0.013296	1248	55	0.8689189	0.033139646	0.86739945	352.49463		13.443756	0.051616	0.0025297	0.00016117	NaN	14.425	141	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12498	+		11584	8345	6724	6870							0.0413398468667765
KEEHLMGKSI	10	Unmodified	_KEEHLMGKSI_					0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3106232051001	2	586.310623	1170.60669	1.8639	0.0010928	2.1306	0.0012492	3.9944	0.002342	586.3118516738513	34.565	0.072369	34.565	34.541	34.614	0	1236	97	0.876284	0.058844924	0.876284	355.11728	0	23.847107						151	4	2	NaN	NaN	NaN	0.65442	1	15510	15510		11.17	1.4243	1	13705	+		11585	10089	6725	6871	9201	9201					0.02821439800072767
KEEHLMGKSI	10	Unmodified						0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	586.310623	1170.60669	1.8639	0.0010928	2.1306	0.0012492	3.9944	0.002342	586.3118516738513	34.565	0.072369	34.565	34.541	34.614	0	1236	97	0.876284	0.058844924	0.876284	355.11728		23.847107	0	0	0	NaN	11.17	151	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13705	+		11586	10089	6725	6871							0.02821439800072767
KEEVKKFNMR	10	Unmodified	_KEEVKKFNMR_					0	0	0		ENST00000509255.1_1_5:134109490-134113463:+|nuORF;nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	ENST00000509255.1_1_5:134109490-134113463:+|nuORF	ENST00000509255.1_1_5:134109490-134113463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8582718894501	2	654.858272	1307.70199	0.68226	0.00044679	-8.4605	-0.0055405	-7.7783	-0.0050937	654.8534989075797	29.521	0.096497	29.514	29.466	29.562	-0.0070648	972	94	1.0375156	0.05648315	1.0359962	419.9433	0	22.86206						176	5	2	NaN	NaN	NaN	0.78146	1	18064	18064		0.16111	0	1	14519			11587	3535	6726	6872	9202	9202					0.06044792991110626
KEFRGLKFS	9	Unmodified	_KEFRGLKFS_					0	0	0			REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3165658627502	2	556.316566	1110.61858	1.9297	0.0010735	-1.6291	-0.00090628	0.3006	0.00016723	556.3157152747482	18.268	0.095852	18.268	18.221	18.316	0	1191	40	0.90387505	0.023894131	0.90387505	366.529	0	9.68927						94	5	3	NaN	NaN	NaN	0.6532	1	13318	13318		3.2116	0.058268	1	6803.4	+		11588	12197	6727	6873	9203	9203					0.06769424605590757
KEFRGLKFS	9	Unmodified						0	0	0			REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.316566	1110.61858	1.9297	0.0010735	-1.6291	-0.00090628	0.3006	0.00016723	556.3157152747482	18.268	0.095852	18.268	18.221	18.316	0	1191	40	0.90387505	0.023894131	0.90387505	366.529		9.68927	-0.11162	0.0004874	-0.00015919	NaN	3.2116	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6803.4	+		11589	12197	6727	6873							0.06769424605590757
KEFRGLKFS	9	Unmodified						0	0	0			REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	REV__ENST00000442760.2_1_13:45914392-45914515:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.316566	1110.61858	2.0673	0.0011501	-3.0396	-0.001691	-0.9723	-0.00054091	556.3161000505519	18.506	0.16798	18.492	18.42	18.588	-0.01395	1188	34	0.90571284	0.020218074	0.9041934	367.27423		8.198608	0.11162	-0.001082	0.00015919	NaN	3.2116	101	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7829.1	+		11590	12197	6727	6873							0.06769424605590757
KEFYETEI	8	Unmodified	_KEFYETEI_					0	0	0		CCDC141|p.K598Nfs*12|1|0.05|ENSG00000163492|chr2:178878069-178878070|-/ACCTTTCAGTAGGGTATTGAAATTGCATTTTG|frameshift_variant;CCDC141|p.Q791Sfs*21|1|0.2|ENSG00000163492|chr2:178869140-178869140|G/-|frameshift_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141	CCDC141|p.K598Nfs*12|1|0.05|ENSG00000163492|chr2:178878069-178878070|-/ACCTTTCAGTAGGGTATTGAAATTGCATTTTG|frameshift_variant	CCDC141|p.K598Nfs*12|1|0.05|ENSG00000163492|chr2:178878069-178878070|-/ACCTTTCAGTAGGGTATTGAAATTGCATTTTG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5040683681998	1	1058.50407	1057.49679	1.9416	0.0020552	-1.2962	-0.001372	0.64548	0.00068324	1058.5017734499236	24.984	0.072378	24.972	24.948	25.02	-0.012392	216	49	1.4908947	0.028401017	1.4893752	302.47498	0	5.7620544						82	4	2	NaN	NaN	NaN	0.83211	1	10754	10754		4.9097	0	1	6614.5			11591	80	6728	6874	9204	9204					-0.029656622674792743
KEGAQCNEDMV	11	Unmodified	_KEGAQCNEDMV_					0	0	0			REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.2551876658999	2	612.255188	1222.49582	0.87046	0.00053295	5.6981	0.0034887	6.5686	0.0040217	612.258490282532	24.695	0.14474	24.695	24.647	24.791	0	1203	73	0.8965218	0.04411459	0.8965218	363.13904	0	17.868774						165	7	2	NaN	NaN	NaN	0.6875	1	17029	17029		8.2775	0.032722	1	17357	+		11592	9367	6729	6875	9205	9205					-0.10652567970350901
KEGAQCNEDMV	11	Unmodified						0	0	0			REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.255188	1222.49582	0.87046	0.00053295	5.6981	0.0034887	6.5686	0.0040217	612.258490282532	24.695	0.14474	24.695	24.647	24.791	0	1203	73	0.8965218	0.04411459	0.8965218	363.13904		17.868774	0.0062799	-0.0011592	0.00075972	NaN	8.2775	165	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17357	+		11593	9367	6729	6875							-0.10652567970350901
KEGAQCNEDMV	11	Unmodified						0	0	0			REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.255188	1222.49582	0.72392	0.00044322	7.702	0.0047156	8.4259	0.0051588	612.257845363793	24.695	0.1688	24.682	24.586	24.755	-0.012392	1203	61	0.8965218	0.03676611	0.89500237	363.13904		14.892242	-0.0062799	0.0012946	-0.00075972	NaN	8.2775	206	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18893	+		11594	9367	6729	6875							-0.10652567970350901
KEGGVTFTW	9	Unmodified	_KEGGVTFTW_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7585494573501	2	512.758549	1023.50255	1.7481	0.00089634	-1.1559	-0.00059271	0.59214	0.00030363	512.7574308515927	23.272	0.072363	23.258	23.234	23.307	-0.013294	1323	34	0.8228144	0.020314455	0.82129496	334.00607	0	8.246277						81	4	3	NaN	NaN	NaN	0.27608	1	9308	9308		20.449	5.2733	1	7092.5			11595	4630	6730	6876	9206	9206					-0.008265189651297078
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.23605113543323	3	414.236051	1239.68632	1.8098	0.00074968	-0.96391	-0.00039929	0.84588	0.00035039	414.23520221008124	17.573	0.095848	17.573	17.549	17.645	0	1413	37	0.7673241	0.022232234	0.7673241	466.13434	0	13.505646						136	5	4	NaN	NaN	NaN	0.25505	1	17530	17530		30.798	17.926	1	15508			11596	818	6731	6877	9207	9207					0.0760682974566862
KEGLDIYKKF	10	Unmodified	_KEGLDIYKKF_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.23605113543323	3	414.236051	1239.68632	1.8148	0.00075174	1.9942	0.00082607	3.809	0.0015778	414.23689876764627	17.81	0.11985	17.796	17.724	17.844	-0.013784	1410	34	0.76917666	0.02037841	0.7676573	467.25974	0	12.379486						75	6	3	NaN	NaN	NaN	0.64011	1	16789	16789		12.15	4.4669	1	7172.9			11597	818	6731	6877	9208	9208					0.0760682974566862
KEGLDIYKKF	10	Unmodified						0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	414.236051	1239.68632	2.1065	0.0008726	-0.43563	-0.00018045	1.6709	0.00069215	414.2359919965252	17.858	0.072042	17.844	17.844	17.916	-0.013786	1416	31	0.76547134	0.018526852	0.7639519	465.00882		11.2547	0.13538	0.0004689	-0.0016861	NaN	30.798	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4539			11598	818	6731	6877							0.0760682974566862
KEHLCFHSL	9	Unmodified	_KEHLCFHSL_					0	0	0		ENST00000278616.8_1_11:108236360-108236483:+|nuORF	ENST00000278616.8_1_11:108236360-108236483:+|nuORF	ENST00000278616.8_1_11:108236360-108236483:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2791261114501	2	557.279126	1112.5437	0.90855	0.00050632	6.5662	0.0036592	7.4747	0.0041655	557.2825991731488	37.169	0.21672	37.169	37.145	37.362	0	1209	70	0.892844	0.042315364	0.892844	362.0481	0	17.158875						258	10	2	NaN	NaN	NaN	0.56671	1	13375	13375		6.8632	1.6743	1	23682			11599	6357	6732	6878	9209	9209					-0.00807081197331172
KEIGDVENW	9	Unmodified	_KEIGDVENW_					0	0	0		nc|ENSG00000135441|P78537-2|BLOC1S1;ENSG00000135441|ENST00000548925|BLOC1S1	nc|ENSG00000135441|P78537-2|BLOC1S1	nc|ENSG00000135441|P78537-2|BLOC1S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.26419594125	2	545.264196	1088.51384	1.6321	0.00088991	2.4906	0.001358	4.1227	0.0022479	545.2666036367228	20.116	0.1204	20.102	20.078	20.198	-0.014141	1284	43	0.8468043	0.025811553	0.8452849	343.47177	0	10.469391						82	6	2	NaN	NaN	NaN	0.25548	1	12005	12005		21.771	2.6527	1	8688.9			11600	2943	6733	6879	9210	9210					-0.026877416616798655
KEKEKHIDRE	10	Unmodified	_KEKEKHIDRE_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.3544079320501	2	656.354408	1310.69426	1.424	0.00093465	8.4747	0.0055624	9.8987	0.0064971	656.3612243672505	39.042	0.24087	39.047	38.927	39.168	0.0046806	1188	76	0.90571284	0.045950234	0.9041934	366.58615	0	18.598297						524	11	8	NaN	NaN	NaN	0.76892	1	18129	18129		3.2116	0.32214	1	221220			11601	548	6734	6880	9211	9211					0.05134356995199596
KEKKKPKN	8	Unmodified	_KEKKKPKN_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.3191085517	2	500.319109	998.623664	1.7337	0.00086743	-7.488	-0.0037464	-5.7542	-0.0028789	500.31574735850705	28.508	0.048271	28.508	28.484	28.532	0	1269	40	0.8560222	0.023961365	0.8560222	347.60104	0	9.729889						59	3	3	NaN	NaN	NaN	0.8439	1	8540	8540		3.1533	0	1	4412.9	+		11602	9834	6735	6881	9212	9212					0.12429728468180201
KEKPVLNMRT	10	Unmodified	_KEKPVLNMRT_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.90078550729993	3	405.900786	1214.68053	1.4653	0.00059476	-6.9941	-0.0028389	-5.5288	-0.0022442	405.89791373882025	16.326	0.26381	16.326	16.254	16.518	0	1446	73	0.7469324	0.04453683	0.7469324	453.84952	0	27.061401						243	12	3	NaN	NaN	NaN	0.62092	1	16855	16855		7.8039	0	1	40925			11603	4017	6736	6882	9213	9213					0.08177407962375582
KELKMSKYKK	10	Unmodified	_KELKMSKYKK_					0	0	0			REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8812156695	2	641.881216	1281.74788	1.5448	0.00099157	-0.32098	-0.00020603	1.2238	0.00078554	641.8814244679493	32.683	0.14481	32.683	32.587	32.732	0	1068	76	0.97906286	0.04572779	0.97906286	396.36786	0	18.512634						240	7	3	NaN	NaN	NaN	0.77928	1	18461	18461		0.69115	0	1	26987	+		11604	11105	6737	6883	9214	9214					0.1182743817332721
KELLEEMYE	9	Unmodified	_KELLEEMYE_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.18989019796663	3	395.18989	1182.54784	1.4301	0.00056515	6.5085	0.0025721	7.9386	0.0031372	395.5262590274454	33.671	0.0965	33.67	33.645	33.742	-0.0018463	1479	28	0.72651637	0.016713142	0.7249969	441.5788	0	10.158295						47	5	2	NaN	NaN	NaN	0.61413	1	15313	15313		2.5994	0.49688	1	2850.6			11605	1896	6738	6884	9215	9215					-0.03613081284947839
KELPIFWIFP	10	Unmodified	_KELPIFWIFP_					0	0	0		ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	ENST00000505451.5_1_4:25314431-25353701:+|nuORF	ENST00000505451.5_1_4:25314431-25353701:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.5812702103666	3	430.58127	1288.72198	1.6235	0.00069906	-5.3291	-0.0022946	-3.7056	-0.0015956	430.57881580052054	25.226	0.19299	25.214	25.141	25.334	-0.012011	1335	31	0.8154261	0.018476725	0.81390667	495.14807	0	11.219574						85	9	2	NaN	NaN	NaN	0.73444	1	17749	17749		2.7042	1.0236	1	6377.2			11606	4604	6739	6885	9216	9216					0.08916911993355825
KELPIFWIFP	10	Unmodified						0	0	0		ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	ENST00000505451.5_1_4:25314431-25353701:+|nuORF	ENST00000505451.5_1_4:25314431-25353701:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	430.58127	1288.72198	1.36	0.00058557	-3.9966	-0.0017208	-2.6366	-0.0011353	430.57968992789	25.057	0.096516	25.057	25.033	25.129	0	1335	37	0.8154261	0.022172093	0.8154261	495.14807		13.46347	-0.078334	0.000434	0.00075972	NaN	2.7042	80	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7862.9			11607	4604	6739	6885							0.08916911993355825
KELPPEHQSLK	11	Unmodified	_KELPPEHQSLK_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.9102265874666	3	435.910227	1304.70885	1.4099	0.00061459	5.5562	0.002422	6.9661	0.0030366	435.91237761448815	14.117	0.12007	14.117	14.093	14.213	0	1485	46	0.72280174	0.027858198	0.72280174	438.84714	0	16.914032						104	6	3	NaN	NaN	NaN	0.7349	1	18857	18857		5.1661	1.5867	1	7237			11608	845	6740	6886	9217	9217					0.06868429143310095
KELTKIYRRKR	11	Unmodified	_KELTKIYRRKR_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.96753391315	2	745.967534	1489.92051	1.4913	0.0011125	-4.4748	-0.003338	-2.9835	-0.0022256	746.4654449843085	20.694	0.048203	20.694	20.67	20.718	0	900	22	1.0812234	0.012733698	1.0812234	437.07434	0	5.1474915						35	3	2	NaN	NaN	NaN	0.77613	1	20550	20550		0.9188	0.40276	1	2627			11609	4370	6741	6887	9218	9218					0.19515145624905017
KELTYSVSTA	10	Unmodified	_KELTYSVSTA_					0	0	0			REV__nc|ENSG00000157181|Q5SWX8-3|ODR4	REV__nc|ENSG00000157181|Q5SWX8-3|ODR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7875038620501	2	549.787504	1097.56045	1.0689	0.00058769	3.2789	0.0018027	4.3478	0.0023904	550.2928931344738	27.109	0.12064	27.109	27.109	27.229	0	1203	64	0.8965218	0.03863156	0.8965218	363.60016	0	15.667694						130	6	2	NaN	NaN	NaN	0.74182	1	12752	12752		5.1889	0.27914	1	13309	+		11610	10141	6742	6888	9219	9219					0.015576981696312941
KEMPEGPS	8	Unmodified	_KEMPEGPS_					0	0	0			REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.3974948067001	1	874.397495	873.390218	1.8484	0.0016163	0.79362	0.00069394	2.6421	0.0023102	874.3980456626048	18.94	0.14399	18.94	18.892	19.036	0	426	94	1.3661768	0.055482388	1.3661768	277.92334	0	11.286865						298	7	3	NaN	NaN	NaN	0.75561	1	5708	5708		15.175	2.5875	1	27039	+		11611	13215	6743	6889	9220	9220					-0.05154116033634182
KENAAYFQFF	10	Unmodified	_KENAAYFQFF_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.8034882772499	2	632.803488	1263.59242	1.7201	0.0010885	-0.10026	-6.3446E-05	1.6198	0.001025	633.304544676946	27.953	0.096504	27.953	27.929	28.026	0	1134	67	0.9387595	0.0403468	0.9387595	380.1095	0	16.3367						119	5	2	NaN	NaN	NaN	0.47445	1	18077	18077		20.513	7.5105	1	13542			11612	7990;1143	6744	6890	9221	9221					-0.028828893566014813
KENAAYFQFF	10	Unmodified						0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.803488	1263.59242	1.0941	0.00069232	-2.7533	-0.0017423	-1.6593	-0.00105	632.8021585666116	27.952	0.16892	27.943	27.895	28.064	-0.009552	1137	91	0.9369253	0.055042148	0.93540585	379.36682		22.286926	-0.0051523	-0.0013889	-0.0016768	NaN	20.513	278	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24513			11613	7990;1143	6744	6890							-0.028828893566014813
KEPAGGPP	8	Unmodified	_KEPAGGPP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.3937300578	1	752.39373	751.386454	1.0087	0.00075893	6.4416	0.0048466	7.4503	0.0056056	752.398620947862	33.069	0.16895	33.069	32.997	33.166	0	606	64	1.2585332	0.03778994	1.2585332	256.6688	0	7.7070007						249	8	3	NaN	NaN	NaN	0.79379	1	4089	4089		10.052	0.92837	1	31529	+		11614	8850	6745	6891	9222	9222					0.0008158225480201509
KEPAGGPP	8	Unmodified						0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	752.39373	751.386454	1.0087	0.00075893	6.4416	0.0048466	7.4503	0.0056056	752.398620947862	33.069	0.16895	33.069	32.997	33.166	0	606	64	1.2585332	0.03778994	1.2585332	256.6688		7.7070007	-0.010191	0.00063907	-0.00014014	NaN	10.052	249	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31529	+		11615	8850	6745	6891							0.0008158225480201509
KEPAGGPP	8	Unmodified						0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.39373	751.386454	1.1196	0.0008424	4.7446	0.0035698	5.8642	0.0044122	752.3968737366982	33.092	0.19285	33.09	33.018	33.21	-0.0024757	603	61	1.2603331	0.03598845	1.2588136	257.03583		7.3395996	0.010191	-0.00063774	0.00014014	NaN	10.052	262	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29134	+		11616	8850	6745	6891							0.0008158225480201509
KEPLTLKGRKE	11	Unmodified	_KEPLTLKGRKE_					0	0	0			REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.5978714567333	3	433.597871	1297.77178	1.1336	0.00049153	0.46278	0.00020066	1.5964	0.0006922	433.5977552521385	27.422	0.14481	27.411	27.315	27.46	-0.010126	1443	31	0.7487872	0.018546999	0.7472678	454.6496	0	11.261383						72	7	2	NaN	NaN	NaN	0.74438	1	17908	17908		4.5433	0.61521	1	5414	+		11617	9787	6746	6892	9223	9223					0.13480994931364876
KEQERTQQ	8	Unmodified	_KEQERTQQ_					0	0	0		nc|ENSG00000100450|P20718-2|GZMH;ENSG00000100450|ENST00000216338|GZMH	nc|ENSG00000100450|P20718-2|GZMH	nc|ENSG00000100450|P20718-2|GZMH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7648944330001	2	523.764894	1045.51524	1.4928	0.00078186	1.8426	0.00096507	3.3353	0.0017469	523.7659303303435	22.453	0.19272	22.453	22.405	22.597	0	1305	91	0.83389086	0.05531639	0.83389086	338.40778	0	22.448364						253	9	3	NaN	NaN	NaN	0.78967	1	10444	10444		10.605	1.643	1	25775			11618	1248	6747	6893	9224	9224					-0.0057010757288935565
KEQIKGSIL	9	Unmodified	_KEQIKGSIL_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.3109491686001	2	508.310949	1014.60735	1.0689	0.00054333	-2.5122	-0.001277	-1.4433	-0.00073363	508.3100497408157	24.623	0.072338	24.61	24.586	24.658	-0.012394	1257	61	0.86339295	0.036833763	0.8618735	350.51895	0	14.953705						104	4	3	NaN	NaN	NaN	0.2961	1	8995	8995		19.164	0.045272	1	14210	+		11619	9777	6748	6894	9225	9225					0.1006260251143658
KEQIKGSIL	9	Unmodified						0	0	0			REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.310949	1014.60735	1.0689	0.00054333	-2.5122	-0.001277	-1.4433	-0.00073363	508.3100497408157	24.623	0.072338	24.61	24.586	24.658	-0.012394	1257	61	0.86339295	0.036833763	0.8618735	350.51895		14.953705	0.0058203	0.0003481	-0.00075972	NaN	19.164	104	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14210	+		11620	9777	6748	6894							0.1006260251143658
KERAKLYRW	9	Unmodified	_KERAKLYRW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3618390336501	2	625.361839	1248.70913	1.1453	0.00071622	5.6861	0.0035558	6.8314	0.0042721	625.365884372548	35.022	0.21722	35.022	34.974	35.191	-4.5776E-05	1188	76	0.90571284	0.04595518	0.9041934	366.7759	0	18.609955						530	10	6	NaN	NaN	NaN	0.64666	1	17002	17002		3.5698	0.35817	1	242630			11621	3801	6749	6895	9226	9226					0.0947189365383565
KERKSNHEVPM	11	Unmodified	_KERKSNHEVPM_					0	0	0			REV__ENSG00000137177|ENST00000259711|KIF13A	REV__ENSG00000137177|ENST00000259711|KIF13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.8484354846499	2	677.848435	1353.68232	0.91616	0.00062102	-4.1843	-0.0028363	-3.2681	-0.0022153	677.8459169374416	28.411	0.09655	28.402	28.378	28.474	-0.0089798	1101	70	0.95892316	0.042119443	0.9574037	387.99442	0	17.042145						183	5	4	NaN	NaN	NaN	0.73057	1	18709	18709		5.4499	0.26105	1	21293	+		11622	9677	6750	6896	9227	9227					0.019624169803137193
KERMTVSVMRF	11	Unmodified	_KERMTVSVMRF_					0	0	0			REV__FPR3|p.A86T|1|0.16|ENSG00000187474|chr19:51824004-51824004|G/A|missense_variant	REV__FPR3|p.A86T|1|0.16|ENSG00000187474|chr19:51824004-51824004|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.9126967004	3	461.912697	1382.71626	0.91525	0.00042276	-3.7035	-0.0017107	-2.7883	-0.0012879	462.2447047712008	24.671	0.072285	24.658	24.61	24.682	-0.012392	1443	52	0.7487872	0.031531572	0.7472678	454.35574	0	19.132996						88	4	2	NaN	NaN	NaN	0.75376	1	18983	18983		1.5256	0.14156	1	6554.5	+		11623	12994	6751	6897	9228	9228					0.04021122147742062
KERRQQDAYKI	11	Unmodified	_KERRQQDAYKI_					0	0	0			REV__ENST00000553626.5_1_14:88852162-88894100:+|nuORF	REV__ENST00000553626.5_1_14:88852162-88894100:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.93191321173333	3	478.931913	1433.77391	1.8982	0.00090909	3.2992	0.0015801	5.1974	0.0024892	478.9328419424404	19.756	0.19216	19.756	19.708	19.9	0	1335	103	0.8154261	0.06283456	0.8154261	494.61725	0	38.11389						315	9	3	NaN	NaN	NaN	0.70699	1	20298	20298		6.9981	1.4606	1	59467	+		11624	8466	6752	6898	9229	9229					0.0743742366917104
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3109491686	2	520.310949	1038.60735	1.4299	0.00074399	-1.4819	-0.00077107	-0.052048	-2.7081E-05	520.3099224970503	20.549	0.16852	20.549	20.525	20.694	0	1272	58	0.854179	0.03501284	0.854179	346.67102	0	14.210083						230	8	3	NaN	NaN	NaN	0.042816	1	10162	10162		49.961	15.523	1	54249			11625	3457	6753	6899	9230	9230					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	ENST00000578649.1_1_17:16284470-16285908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3109491686	2	520.310949	1038.60735	1.109	0.00057704	-0.74917	-0.0003898	0.35986	0.00018724	520.3103146099548	20.67	0.16875	20.656	20.584	20.752	-0.014086	1266	61	0.85786515	0.036849678	0.8563457	348.16708	0	14.955536						241	8	3	NaN	NaN	NaN	0.041983	1	9956	9956		50.315	28.48	1	44708			11626	3457	6753	6899	9231	9231					0.08958602511415847
KETDLLILF	9	Unmodified	_KETDLLILF_					0	0	0		ENST00000465871.1_1_2:170663438-170665064:+|nuORF;ENSG00000138385|ENST00000260956|SSB	ENST00000465871.1_1_2:170663438-170665064:+|nuORF	ENST00000465871.1_1_2:170663438-170665064:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.3209825386501	2	546.320983	1090.62741	0.74445	0.00040671	-0.57845	-0.00031602	0.166	9.069E-05	546.3212371058582	31.91	0.12064	31.906	31.858	31.979	-0.0037613	1224	34	0.883646	0.020242155	0.88212657	358.40643	0	8.210205						113	6	3	NaN	NaN	NaN	0.2345	1	12126	12126		23.118	2.6689	1	10676			11627	3153	6754	6900	9232	9232					0.08572353451381787
KETDLLILF	9	Unmodified						0	0	0		ENST00000465871.1_1_2:170663438-170665064:+|nuORF;ENSG00000138385|ENST00000260956|SSB	ENST00000465871.1_1_2:170663438-170665064:+|nuORF	ENST00000465871.1_1_2:170663438-170665064:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.320983	1090.62741	0.89262	0.00048765	-1.7898	-0.00097782	-0.8972	-0.00049016	546.320215108341	31.887	0.072416	31.887	31.863	31.935	0	1230	40	0.8799654	0.023925126	0.8799654	356.9136		9.704041	-0.0096554	-0.00060827	-0.0010806	NaN	23.118	94	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9283.8			11628	3153	6754	6900							0.08572353451381787
KETEVTSEL	9	Unmodified	_KETEVTSEL_					0	0	0			REV__ENST00000433782.6_1_2:190593496-190609506:+|nuORF	REV__ENST00000433782.6_1_2:190593496-190609506:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.26386159025	2	518.263862	1034.51317	1.5951	0.00082666	-3.7462	-0.0019415	-2.1511	-0.0011149	518.7659705862524	20.068	0.096209	20.054	20.03	20.126	-0.014141	1290	55	0.84311575	0.03319341	0.8415963	342.1987	0	13.472351						68	5	2	NaN	NaN	NaN	0.64666	1	9757	9757		3.5698	0.35817	1	7682.9	+		11629	10031	6755	6901	9233	9233					-0.002705811013811399
KETFFFYV	8	Unmodified	_KETFFFYV_					0	0	0			REV__nc|ENSG00000170381|O15041-2|SEMA3E	REV__nc|ENSG00000170381|O15041-2|SEMA3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7736682053	2	540.773668	1079.53278	1.2923	0.00069887	-8.498	-0.0045955	-7.2057	-0.0038966	540.7694790104999	12.388	0.14388	12.388	12.316	12.46	0	1317	43	0.8265074	0.02584505	0.8265074	335.27405	0	10.4841						134	7	3	NaN	NaN	NaN	0.81756	1	11955	11955		6.8632	2.1341	1	10314	+		11630	10579	6756	6902	9234	9234					-0.0038016029996015277
KEWNDLVL	8	Unmodified	_KEWNDLVL_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.77419952155	2	508.7742	1015.53385	0.84461	0.00042971	-8.4163	-0.004282	-7.5717	-0.0038523	508.76978333406964	30.366	0.072376	30.359	30.335	30.407	-0.0064106	1284	64	0.8468043	0.038731933	0.8452849	343.78015	0	15.724121						111	4	2	NaN	NaN	NaN	0.5868	1	9024	9024		26.115	6.9966	1	12383	+		11631	10971	6757	6903	9235	9235					0.02670054068948957
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2714896571	2	584.27149	1166.52843	2.5719	0.0015027	0.46556	0.00027201	3.0374	0.0017747	584.2712943083018	25.371	0.26539	25.371	25.298	25.564	0	1200	100	0.89836043	0.060700238	0.89836043	364.07864	0	24.599976						619	12	5	NaN	NaN	NaN	0.026469	1	15350	15350		63.731	28.434	1	290900			11632	4338	6758	6904	9236	9236					-0.0481766951352256
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2714896571	2	584.27149	1166.52843	2.308	0.0013485	0.9643	0.00056342	3.2723	0.0019119	584.2722823995457	25.394	0.24127	25.382	25.31	25.551	-0.012011	1197	100	0.9001988	0.060654342	0.8986794	364.8237	0	24.58139						498	11	5	NaN	NaN	NaN	0.059222	1	14818	14818		42.995	2.841	1	271430			11633	4338	6758	6904	9237	9237					-0.0481766951352256
KFAQFITC	8	Unmodified	_KFAQFITC_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.24676335054994	2	479.246763	956.478974	0.9121	0.00043712	-2.1594	-0.0010349	-1.2473	-0.00059776	479.2457997951939	33.528	0.072365	33.528	33.48	33.552	0	1317	37	0.8265074	0.022157669	0.8265074	335.81693	0	9.002869						55	4	2	NaN	NaN	NaN	0.8439	1	7249	7249		3.1533	0	1	4208	+		11634	8716	6759	6905	9238	9238					-0.0010065600332609392
KFAYCGKWF	9	Unmodified	_KFAYCGKWF_					0	0	0		ENST00000557815.1_1_15:70343714-70344902:-|nuORF;TLE1|p.T727Pfs*28|1|0.17|ENSG00000196781|chr9:81584475-81584475|C/-|frameshift_variant;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;ENSG00000196781|ENST00000376499|TLE1;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.28113748415	2	575.281137	1148.54772	1.7033	0.00097989	-9.9895	-0.0057468	-8.2862	-0.0047669	575.7769861190949	23.513	0.096487	23.5	23.476	23.572	-0.013294	1212	64	0.8910048	0.038639963	0.88948536	361.16373	0	15.662476						138	5	3	NaN	NaN	NaN	0.49672	1	14252	14252		9.746	0.78402	1	14722			11635	3263	6760	6906	9239	9239					-0.020609917036154002
KFAYCGKWF	9	Unmodified						0	0	0		ENST00000557815.1_1_15:70343714-70344902:-|nuORF;TLE1|p.T727Pfs*28|1|0.17|ENSG00000196781|chr9:81584475-81584475|C/-|frameshift_variant;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;ENSG00000196781|ENST00000376499|TLE1;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	ENST00000557815.1_1_15:70343714-70344902:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.281137	1148.54772	1.8247	0.0010497	-8.1723	-0.0047014	-6.3476	-0.0036516	575.2759396048729	23.489	0.12051	23.489	23.465	23.586	0	1218	67	0.8873258	0.04046899	0.8873258	359.67245		16.40387	-0.0052282	0.00070358	-0.0010798	NaN	9.746	135	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15226			11636	3263	6760	6906							-0.020609917036154002
KFCRNIESKC	10	Unmodified	_KFCRNIESKC_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.8706089850334	3	409.870609	1226.59	1.0813	0.0004432	-0.11341	-4.6483E-05	0.96791	0.00039672	409.87050865149246	15.148	0.16822	15.136	15.016	15.184	-0.012201	1488	37	0.7209441	0.022292614	0.71942466	438.01083	0	13.543915						115	8	2	NaN	NaN	NaN	0.76892	1	16458	16458		1.3696	0.48499	1	20212	+		11637	9845	6761	6907	9240	9240					-0.014233843575311766
KFDADPVEL	9	Unmodified	_KFDADPVEL_					0	0	0		ENST00000433031.1_1_7:57216803-57217046:-|nuORF;ENSG00000125772|ENST00000379019|GPCPD1	ENST00000433031.1_1_7:57216803-57217046:-|nuORF	ENST00000433031.1_1_7:57216803-57217046:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.263664625	2	517.263665	1032.51278	1.1307	0.00058488	-3.5751	-0.0018492	-2.4443	-0.0012644	517.2614027533136	22.38	0.096174	22.366	22.318	22.414	-0.013733	1293	40	0.84127116	0.023982108	0.8397517	341.4587	0	9.733948						101	5	2	NaN	NaN	NaN	0.14787	1	9675	9675		28.896	4.3336	1	15080			11638	2471	6762	6908	9241	9241					-0.00217956030564892
KFDDGAVFL	9	Unmodified	_KFDDGAVFL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.2609249708	2	506.260925	1010.5073	2.1051	0.0010657	-1.8349	-0.00092895	0.27016	0.00013677	506.2599571667867	25.153	0.26539	25.153	25.105	25.371	0	1296	85	0.8394264	0.051673353	0.8394264	340.80756	0	20.9794						476	12	4	NaN	NaN	NaN	0.19268	1	9000	9000		25.801	3.966	1	162100			11639	623	6763	6909	9242	9242					0.0024636517761109644
KFDDGAVFL	9	Unmodified	_KFDDGAVFL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.514573475	1	1011.51457	1010.5073	1.8485	0.0018698	0.9962	0.0010077	2.8447	0.0028775	1011.5160366599935	25.153	0.0965	25.153	25.129	25.226	0	186	55	1.5086359	0.03192067	1.5086359	306.25757	0	6.480011						105	5	2	NaN	NaN	NaN	0.03618	1	9001	9001		52.78	15.477	1	11407			11640	623	6763	6909	9243	9243					0.0024636517761109644
KFDDGAVFL	9	Unmodified	_KFDDGAVFL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2609249708	2	506.260925	1010.5073	1.7483	0.00088511	-1.3653	-0.0006912	0.38304	0.00019392	506.26025264858515	25.177	0.24125	25.165	25.117	25.358	-0.012011	1296	94	0.8394264	0.05720049	0.83790696	340.80756	0	23.22342						463	11	3	NaN	NaN	NaN	0.14787	1	8823	8823		28.896	11.097	1	167090			11641	623	6763	6909	9244	9244					0.0024636517761109644
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.21687950913326	3	406.21688	1215.62881	1.7523	0.00071182	-2.8887	-0.0011734	-1.1364	-0.00046162	406.2155779627863	25.901	0.04826	25.901	25.877	25.926	0	1494	61	0.7172283	0.037142277	0.7172283	435.79694	0	22.568115						74	3	2	NaN	NaN	NaN	0.29341	1	16878	16878		13.638	4.6961	1	4985.3			11642	2403	6764	6910	9245	9245					0.02961987540129485
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8216810304	2	608.821681	1215.62881	2.105	0.0012816	-1.9377	-0.0011797	0.16728	0.00010184	608.8205140159121	25.901	0.33787	25.901	25.853	26.191	0	1143	100	0.9332562	0.060575783	0.9332562	378.0423	0	24.537994						750	15	6	NaN	NaN	NaN	5.8423E-12	1	16879	16879		148.45	102.62	1	407460			11643	2403	6764	6910	9246	9246					0.02961987540129485
KFDDIRIYF	9	Unmodified	_KFDDIRIYF_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.8216810304	2	608.821681	1215.62881	2.1929	0.0013351	-1.5531	-0.00094555	0.6398	0.00038953	608.820926031256	25.974	0.31373	25.962	25.89	26.203	-0.0116	1140	136	0.93509084	0.08265692	0.9335714	378.7855	0	33.482605						785	14	6	NaN	NaN	NaN	1.2966E-07	1	16209	16209		136.74	87.343	1	413670			11644	2403	6764	6910	9247	9247					0.02961987540129485
KFDFPVSYL	9	Unmodified	_KFDFPVSYL_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2922250992001	2	558.292225	1114.5699	1.5747	0.00087917	-1.032	-0.00057615	0.54275	0.00030301	558.2914064571987	28.894	0.36203	28.894	28.774	29.136	0	1239	82	0.87444305	0.049679935	0.87444305	354.57864	0	20.144745						619	16	4	NaN	NaN	NaN	0.059222	1	13463	13463		42.995	15.699	1	113460			11645	3033	6765	6911	9248	9248					0.017195112458011863
KFDPMGKYF	9	Oxidation (M)	_KFDPM(Oxidation (M))GKYF_		KFDPM(1)GKYF		KFDPM(58)GKYF	0	0	1		ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3	ENST00000511074.1_1_5:177305805-177309842:+|nuORF	ENST00000511074.1_1_5:177305805-177309842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7758849307501	2	574.775885	1147.53722	1.8831	0.0010823	-2.1358	-0.0012276	-0.25278	-0.00014529	574.7744159298315	18.17	0.071991	18.156	18.084	18.156	-0.01395	1221	70	0.885486	0.042338252	0.88396657	358.93045	0	17.161713						105	4	3	NaN	NaN	NaN	0.030545	1	14225	14225		58.398	24.972	1	12176			11646	577	6766	6912	9249	9249		58			-0.030650191486984113
KFDYVQGVW	9	Unmodified	_KFDYVQGVW_					0	0	0			REV__ENST00000409111.2_1_2:197226569-197226671:-|nuORF	REV__ENST00000409111.2_1_2:197226569-197226671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2874740723001	2	571.287474	1140.5604	1.2786	0.00073044	-6.3879	-0.0036493	-5.1093	-0.0029189	571.2840686480075	32.128	0.12066	32.128	32.008	32.128	0	1218	34	0.8873258	0.020235598	0.8873258	359.70233	0	8.203064						51	6	2	NaN	NaN	NaN	0.58159	1	14461	14461		6.2502	1.3405	1	6221.2	+		11647	12057	6767	6913	9250	9250					-0.004262570397031595
KFEQYYGFC	9	Unmodified	_KFEQYYGFC_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.7576921776001	2	592.757692	1183.50083	0.63484	0.00037631	5.5142	0.0032686	6.149	0.0036449	592.7605677948305	32.803	0.16888	32.8	32.727	32.896	-0.0031052	1206	61	0.894683	0.036770105	0.89316356	362.52753	0	14.899353						207	8	3	NaN	NaN	NaN	0.60736	1	15338	15338		5.1889	0	1	21632	+		11648	8969	6768	6914	9251	9251					-0.08357896045390589
KFEQYYGFC	9	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.757692	1183.50083	0.97936	0.00058052	3.0669	0.0018179	4.0462	0.0023984	592.7578592526752	32.78	0.096497	32.78	32.756	32.852	0	1209	76	0.892844	0.04597509	0.892844	361.78235		18.62918	-0.0099751	-0.0017524	-0.00015978	NaN	5.1889	176	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18708	+		11649	8969	6768	6914							-0.08357896045390589
KFEQYYGFC	9	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.757692	1183.50083	0.63484	0.00037631	5.5142	0.0032686	6.149	0.0036449	592.7605677948305	32.803	0.16888	32.8	32.727	32.896	-0.0031052	1206	61	0.894683	0.036770105	0.89316356	362.52753		14.899353	0.0099751	0.0011489	0.00015978	NaN	5.1889	207	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21632	+		11650	8969	6768	6914							-0.08357896045390589
KFFAPAFEV	9	Unmodified	_KFFAPAFEV_					0	0	0			REV__ENSG00000067596|ENST00000262415|DHX8	REV__ENSG00000067596|ENST00000262415|DHX8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.52353243079995	3	352.523532	1054.54877	1.3972	0.00049256	1.7757	0.00062599	3.173	0.0011186	352.8572154000395	20.887	0.14455	20.887	20.838	20.983	0	1551	64	0.6818875	0.03907782	0.6818875	415.03183	0	23.78476						128	7	2	NaN	NaN	NaN	0.56671	1	10845	10845		3.9281	0	1	11827	+		11651	8551	6769	6915	9252	9252					0.023675459369314922
KFFEEVLLF	9	Unmodified	_KFFEEVLLF_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3235252276	2	586.323525	1170.6325	0.90242	0.00052911	-4.2327	-0.0024818	-3.3303	-0.0019526	586.3202020750255	32.513	0.21719	32.51	32.438	32.655	-0.0031052	1170	67	0.91673553	0.040412188	0.9152161	371.51035	0	16.377167						309	10	4	NaN	NaN	NaN	0.070055	1	14971	14971		40.154	14.039	1	42984			11652	3400	6770	6916	9253	9253					0.05400657313998636
KFFEEVLLF	9	Unmodified						0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	586.323525	1170.6325	1.5671	0.00091885	-4.9098	-0.0028787	-3.3426	-0.0019599	586.3199317193855	32.442	0.19302	32.442	32.394	32.587	0	1167	79	0.91857195	0.047770202	0.91857195	372.25455		19.35907	-0.034079	-0.00045812	0.0016779	NaN	40.154	251	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45904			11653	3400	6770	6916							0.05400657313998636
KFFTSHNGMQF	11	Unmodified	_KFFTSHNGMQF_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3136972103	2	672.313697	1342.61284	1.5804	0.0010625	-1.4113	-0.00094881	0.16915	0.00011372	672.312467671584	19.612	0.096045	19.612	19.564	19.66	0	1122	34	0.9460945	0.020167947	0.9460945	382.83566	0	8.16095						95	5	3	NaN	NaN	NaN	0.22707	1	19450	19450		28.236	19.317	1	6436.9			11654	4793	6771	6917	9254	9254					-0.04476041968428035
KFFTSHNGMQF	11	Unmodified						0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.313697	1342.61284	1.8522	0.0012452	-4.6359	-0.0031168	-2.7837	-0.0018715	672.8136582891495	19.876	0.096233	19.861	19.789	19.885	-0.014141	1119	25	0.9479278	0.014666855	0.94640833	383.57748		5.934906	0.12466	-0.0030947	0.00015691	NaN	28.236	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3815.1			11655	4793	6771	6917							-0.04476041968428035
KFGAAAAG	8	Unmodified	_KFGAAAAG_					0	0	0		ELN|p.G269A|1|0.12|ENSG00000049540|chr7:74051756-74051756|G/C|missense_variant	ELN|p.G269A|1|0.12|ENSG00000049540|chr7:74051756-74051756|G/C|missense_variant	ELN|p.G269A|1|0.12|ENSG00000049540|chr7:74051756-74051756|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	0.78331	0.00054234	6.0021	0.0041557	6.7854	0.004698	692.376632382314	33.14	0.14473	33.138	33.09	33.235	-0.0024757	729	76	1.184579	0.045205235	1.1830596	241.96194	0	9.233597						171	7	3	NaN	NaN	NaN	0.84887	1	2987	2987		0.32989	0	1	12642			11656	285	6772	6918	9255	9255					0.007296169459436896
KFIDNTLYF	9	Unmodified	_KFIDNTLYF_					0	0	0		ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8029569610001	2	580.802957	1159.59136	2.0615	0.0011973	1.9661	0.0011419	4.0276	0.0023392	580.8043609593321	26.432	0.1448	26.432	26.36	26.505	0	1191	61	0.90387505	0.036746264	0.90387505	366.33917	0	14.893219						190	7	3	NaN	NaN	NaN	0.070055	1	15127	15127		40.154	2.023	1	27327			11657	3715	6773	6919	9256	9256					0.017948962745094832
KFIDNTLYF	9	Unmodified	_KFIDNTLYF_					0	0	0		ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8029569610001	2	580.802957	1159.59136	1.4662	0.00085159	1.9739	0.0011465	3.4402	0.0019981	581.3053080386642	26.456	0.1689	26.445	26.421	26.59	-0.011137	1191	67	0.90387505	0.04042095	0.9023556	366.33917	0	16.382538						214	8	3	NaN	NaN	NaN	0.032826	1	14623	14623		55.413	15.954	1	26754			11658	3715	6773	6919	9257	9257					0.017948962745094832
KFIDPIYQVW	10	Unmodified	_KFIDPIYQVW_					0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.8529811588	2	654.852981	1307.69141	1.5716	0.0010292	-0.21505	-0.00014082	1.3566	0.00088834	654.85313614253	29.474	0.24137	29.474	29.425	29.667	0	1107	73	0.9552588	0.04398626	0.9552588	386.64914	0	17.803833						603	11	5	NaN	NaN	NaN	0.036001	1	18896	18896		69.363	37.688	1	484280			11659	972	6774	6920	9258	9258					0.04987133608324257
KFIDPIYQVW	10	Unmodified	_KFIDPIYQVW_					0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.8529811588	2	654.852981	1307.69141	1.0907	0.00071426	2.1531	0.00141	3.2438	0.0021242	654.8563304701167	30.439	0.072374	30.439	30.415	30.487	0	1110	40	0.95342636	0.023819447	0.95342636	385.9074	0	9.641113						75	4	2	NaN	NaN	NaN	0.53519	1	18897	18897		21.85	4.9921	1	8675.8			11660	972	6774	6920	9259	9259					0.04987133608324257
KFIDPIYQVW	10	Unmodified	_KFIDPIYQVW_					0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8529811588	2	654.852981	1307.69141	0.5579	0.00036534	-0.97256	-0.00063688	-0.41466	-0.00027154	655.3530989668216	30.317	0.19301	30.311	30.263	30.456	-0.0064087	1107	46	0.9552588	0.02748996	0.9537394	386.64914	0	11.126801						148	9	2	NaN	NaN	NaN	0.62134	1	18063	18063		20.688	11.726	1	25198			11661	972	6774	6920	9260	9260					0.04987133608324257
KFIDPIYQVW	10	Unmodified	_KFIDPIYQVW_					0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8529811588	2	654.852981	1307.69141	1.2931	0.00084682	0.75216	0.00049255	2.0453	0.0013394	654.8543388757062	29.497	0.41018	29.49	29.442	29.852	-0.0070648	1107	67	0.9552588	0.04031205	0.9537394	386.6491	0	16.31665						765	18	5	NaN	NaN	NaN	0.04894	1	18065	18065		72.076	29.081	1	510560			11662	972	6774	6920	9261	9261					0.04987133608324257
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7951319289001	2	543.795132	1085.57571	2.5649	0.0013948	-1.3915	-0.0007567	1.1733	0.00063805	543.793980073208	17.405	0.35962	17.405	17.309	17.669	0	1260	130	0.8615505	0.079239786	0.8615505	349.4648	0	32.14148						1237	16	5	NaN	NaN	NaN	3.1551E-07	1	12207	12207		129.85	54.148	1	1809600			11663	1222	6775	6921	9262	9262					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289001	2	543.795132	1085.57571	1.8843	0.0010247	-0.90108	-0.00049	0.98325	0.00053468	543.7948625374682	17.81	0.071928	17.796	17.772	17.844	-0.013784	1263	46	0.85970795	0.027635753	0.8581885	348.7174	0	11.209686						104	4	3	NaN	NaN	NaN	0.46215	1	11898	11898		11.17	0.56537	1	14672			11664	1222	6775	6921	9263	9263					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289001	2	543.795132	1085.57571	2.8174	0.0015321	-1.281	-0.00069661	1.5363	0.00083545	543.7942443098864	17.498	0.33587	17.484	17.412	17.748	-0.013569	1260	142	0.8615505	0.08661091	0.8600311	349.4648	0	35.13138						1234	15	6	NaN	NaN	NaN	0.013225	1	11900	11900		83.13	27.538	1	1961100			11665	1222	6775	6921	9264	9264					0.03634609757477847
KFIDTTSKF	9	Unmodified						0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.795132	1085.57571	1.8526	0.0010074	-1.3039	-0.00070905	0.54872	0.00029839	544.2958170344252	17.717	0.047937	17.717	17.717	17.765	0	1263	40	0.85970795	0.023953617	0.85970795	348.7174		9.7161255	0.11627	-2.3388E-05	-0.00016157	NaN	83.13	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9802.3			11666	1222	6775	6921							0.03634609757477847
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.31824288445006	2	511.318243	1020.62193	1.7723	0.0009062	-1.2886	-0.00065886	0.48372	0.00024734	511.31750493626964	27.084	0.24133	27.084	27.036	27.277	0	1263	49	0.85970795	0.029479682	0.85970795	348.9954	0	11.967194						284	11	4	NaN	NaN	NaN	0.048656	1	9415	9415		47.482	0.34574	1	94878			11667	3910	6776	6922	9265	9265					0.11244674659576503
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.31824288445006	2	511.318243	1020.62193	1.0257	0.00052446	-0.36426	-0.00018625	0.66145	0.00033821	511.317996587499	27.132	0.26546	27.122	27.074	27.339	-0.010126	1263	49	0.85970795	0.029479682	0.8581885	348.9954	0	11.967194						298	12	4	NaN	NaN	NaN	0.048656	1	9224	9224		47.482	15.029	1	88872			11668	3910	6776	6922	9266	9266					0.11244674659576503
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.5573475571666	3	407.557348	1219.65021	1.9951	0.00081312	-1.919	-0.0007821	0.076119	3.1023E-05	407.556609225944	17.525	0.26367	17.525	17.453	17.717	0	1473	49	0.7302302	0.029707372	0.7302302	443.68063	0	18.049896						530	12	5	NaN	NaN	NaN	0.022082	1	16975	16975		54.277	26.041	1	239580			11669	5371	6777	6923	9267	9267					0.04917417359479259
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.83238310245	2	610.832383	1219.65021	1.5759	0.00096264	-1.4797	-0.00090383	0.096273	5.8807E-05	610.8317541032548	17.525	0.26367	17.525	17.453	17.717	0	1161	58	0.9222442	0.034880698	0.9222442	373.56775	0	14.128937						411	12	4	NaN	NaN	NaN	0.011167	1	16976	16976		89.374	36.75	1	68975			11670	5371	6777	6923	9268	9268					0.04917417359479259
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.5573475571666	3	407.557348	1219.65021	1.8571	0.00075689	-1.6465	-0.00067103	0.21067	8.586E-05	407.55673549011163	18.458	0.33595	18.444	18.42	18.756	-0.01395	1473	46	0.7302302	0.027849138	0.7287108	443.68063	0	16.920837						257	15	2	NaN	NaN	NaN	0.46215	1	16291	16291		10.244	1.89	1	87561			11671	5371	6777	6923	9269	9269					0.04917417359479259
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.5573475571666	3	407.557348	1219.65021	1.8175	0.00074072	-1.3673	-0.00055726	0.45014	0.00018346	407.55674045598255	18.098	0.12003	18.084	17.964	18.084	-0.013786	1470	37	0.7320868	0.02227813	0.73056734	444.8087	0	13.53595						98	6	2	NaN	NaN	NaN	0.059222	1	16292	16292		38.269	19.711	1	14795			11672	5371	6777	6923	9270	9270					0.04917417359479259
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.5573475571666	3	407.557348	1219.65021	2.0364	0.00082995	-1.4904	-0.00060743	0.54598	0.00022252	407.55663697134065	18.29	0.24	18.276	18.132	18.372	-0.01395	1473	43	0.7302302	0.025991142	0.7287108	443.68063	0	15.791931						201	11	2	NaN	NaN	NaN	0.11656	1	16293	16293		35.523	2.0976	1	96485			11673	5371	6777	6923	9271	9271					0.04917417359479259
KFIWTNHKF	9	Unmodified						0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	407.557348	1219.65021	1.717	0.00069978	-3.1037	-0.0012649	-1.3867	-0.00056515	407.8896349624588	17.765	0.11991	17.765	17.765	17.885	0	1473	34	0.7302302	0.020422697	0.7302302	443.68063		12.40863	-0.15949	-0.0017143	-0.00016859	NaN	38.269	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6344.7			11674	5371	6777	6923							0.04917417359479259
KFLEKLDQL	9	Unmodified	_KFLEKLDQL_					0	0	0		RBBP8-TAF4B|1|fusion;ENSG00000141384|ENST00000269142|TAF4B	RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3318815759501	2	567.331882	1132.64921	1.9084	0.0010827	-11.203	-0.0063559	-9.2947	-0.0052732	567.8276694640913	22.26	0.19296	22.26	22.163	22.356	0	1143	37	0.9332562	0.022016883	0.9332562	378.3531	0	8.925903						87	9	2	NaN	NaN	NaN	0.63698	1	14202	14202		3.9685	0	1	6201.8			11675	3316	6778	6924	9272	9272					0.0881915819995811
KFLEKLDQL	9	Unmodified						0	0	0		RBBP8-TAF4B|1|fusion;ENSG00000141384|ENST00000269142|TAF4B	RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.331882	1132.64921	1.0954	0.00062143	-8.2821	-0.0046987	-7.1867	-0.0040773	567.8282397903456	22.332	0.16844	22.318	22.27	22.438	-0.013731	1143	40	0.9332562	0.023852885	0.93173677	378.3531		9.670227	0.029109	0.0013486	-0.00075972	NaN	3.9685	160	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12869			11676	3316	6778	6924							0.0881915819995811
KFNNGFHLS	9	Unmodified	_KFNNGFHLS_					0	0	0			REV__ENST00000431580.1_1_20:25715044-25715095:+|nuORF	REV__ENST00000431580.1_1_20:25715044-25715095:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.5319548737	1	1063.53195	1062.52468	1.3218	0.0014058	-2.7525	-0.0029274	-1.4307	-0.0015216	1063.5294454655605	28.339	0.072384	28.33	28.305	28.378	-0.0089779	165	61	1.5210435	0.03543353	1.5195241	308.5728	0	7.188385						101	4	2	NaN	NaN	NaN	0.66196	1	10971	10971		2.4615	0	1	7744.2	+		11677	12157	6779	6925	9273	9273					-0.004082944967194635
KFNPVSFTW	9	Unmodified	_KFNPVSFTW_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2900167612501	2	563.290017	1124.56548	2.1624	0.0012181	-4.4004	-0.0024787	-2.238	-0.0012606	563.7885340259314	27.084	0.33785	27.084	27.012	27.35	0	1257	145	0.86339295	0.088296115	0.86339295	350.05994	0	35.799377						1399	15	4	NaN	NaN	NaN	0.0084155	1	13868	13868		95.62	53.302	1	821060			11678	2433	6780	6926	9274	9274					0.008180468229056714
KFNPVSFTW	9	Unmodified	_KFNPVSFTW_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2900167612501	2	563.290017	1124.56548	1.8452	0.0010394	-4.9559	-0.0027916	-3.1107	-0.0017522	563.2905435038595	27.108	0.28961	27.098	27.049	27.339	-0.010126	1254	139	0.8652351	0.08461702	0.86371565	350.80682	0	34.30771						1483	13	5	NaN	NaN	NaN	0.00015011	1	13442	13442		119.86	64.445	1	798600			11679	2433	6780	6926	9275	9275					0.008180468229056714
KFQDAHFEF	9	Unmodified	_KFQDAHFEF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7747308378	2	584.774731	1167.53491	1.298	0.00075905	-7.1379	-0.004174	-5.8398	-0.003415	584.7754746901954	20.549	0.28901	20.535	20.415	20.704	-0.014141	1215	55	0.8891654	0.033114612	0.88764596	360.3486	0	13.420197						286	13	4	NaN	NaN	NaN	0.11656	1	14857	14857		33.425	14.262	1	57620			11680	3097	6781	6927	9276	9276					-0.04215731562157998
KFQTGTGT	8	Unmodified	_KFQTGTGT_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.4257584677003	1	839.425758	838.418482	1.7435	0.0014635	-1.1164	-0.00093717	0.62705	0.00052636	839.4250324654904	21.488	0.21694	21.488	21.44	21.657	0	1332	55	0.8172735	0.033250928	0.8172735	166.36661	0	6.7686462						255	10	3	NaN	NaN	NaN	0.84945	1	5245	5245		0	0	1	43045	+		11681	9864	6782	6928	9277	9277					-0.007190500620140483
KFQTGTGT	8	Unmodified						0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.425758	838.418482	1.7435	0.0014635	-1.1164	-0.00093717	0.62705	0.00052636	839.4250324654904	21.488	0.21694	21.488	21.44	21.657	0	1332	55	0.8172735	0.033250928	0.8172735	166.36661		6.7686462	0.006982	-0.00052365	0.00075972	NaN	0	255	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43045	+		11682	9864	6782	6928							-0.007190500620140483
KFQTGTGT	8	Unmodified						0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	839.425758	838.418482	1.2811	0.0010754	-0.096682	-8.1158E-05	1.1844	0.00099421	839.4253143019264	21.489	0.19276	21.475	21.426	21.619	-0.014006	1332	52	0.8172735	0.03140533	0.81575406	166.36661		6.3929596	-0.006982	0.00033236	-0.00075972	NaN	0	247	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40762	+		11683	9864	6782	6928							-0.007190500620140483
KFSPRPLKF	9	Unmodified	_KFSPRPLKF_					0	0	0		BRWD1|p.L353Wfs*19|1|0.17|ENSG00000185658|chr21:39277297-39277297|A/-|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	BRWD1|p.L353Wfs*19|1|0.17|ENSG00000185658|chr21:39277297-39277297|A/-|frameshift_variant	BRWD1|p.L353Wfs*19|1|0.17|ENSG00000185658|chr21:39277297-39277297|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.89395969210005	3	373.89396	1118.66005	1.7818	0.00066619	-1.1102	-0.00041509	0.67158	0.0002511	373.89332142330824	16.734	0.19193	16.734	16.662	16.854	0	1431	40	0.75620437	0.024101853	0.75620437	459.92535	0	14.658813						225	9	4	NaN	NaN	NaN	0.35794	1	13633	13633		10.244	0	1	37211			11684	68	6783	6929	9278	9278					0.10546605364902462
KFSSAGKTTL	10	Unmodified	_KFSSAGKTTL_					0	0	0			REV__UQCRC2-NFU1|1|fusion	REV__UQCRC2-NFU1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2927564154501	2	520.292756	1038.57096	1.8546	0.00096494	-2.6824	-0.0013957	-0.82784	-0.00043072	520.2916705863777	16.782	0.1918	16.782	16.758	16.949	0	1257	67	0.86339295	0.040521502	0.86339295	350.4107	0	16.44577						309	9	3	NaN	NaN	NaN	0.60686	1	10151	10151		14.425	1.4222	1	39792	+		11685	9806	6784	6930	9279	9279					0.053217256147036096
KFSTMPFLF	9	Unmodified	_KFSTMPFLF_					0	0	0		ENST00000467182.1_1_13:110813537-110815831:-|nuORF;ENSG00000187498|ENST00000375820|COL4A1	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2911708542	2	559.291171	1116.56779	0.73958	0.00041364	-1.6198	-0.00090593	-0.8802	-0.00049229	559.2901362703744	31.187	0.072416	31.187	31.163	31.235	0	1236	64	0.876284	0.038644075	0.876284	355.31738	0	15.669495						131	4	3	NaN	NaN	NaN	0.16939	1	13536	13536		27.296	5.1699	1	14403			11686	5505	6785	6931	9280	9280					0.014167592363264703
KFSTMPFLF	9	Unmodified						0	0	0		ENST00000467182.1_1_13:110813537-110815831:-|nuORF;ENSG00000187498|ENST00000375820|COL4A1	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.291171	1116.56779	0.98004	0.00054813	-6.0965	-0.0034097	-5.1164	-0.0028616	559.2881319069498	31.234	0.21719	31.229	31.109	31.326	-0.0050716	1233	52	0.87812483	0.031290054	0.8766054	356.0638		12.687561	0.021084	-0.002104	0.00016068	NaN	27.296	198	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19343			11687	5505	6785	6931							0.014167592363264703
KFTDVAEI	8	Unmodified	_KFTDVAEI_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.74765042005	2	461.74765	921.480748	0.7347	0.00033925	-1.1547	-0.00053318	-0.42	-0.00019393	461.74696150843073	20.573	0.14434	20.573	20.501	20.646	0	1320	37	0.824661	0.022157669	0.824661	335.24698	0	9.00769						130	7	2	NaN	NaN	NaN	0.55996	1	6435	6435		27.789	1.0573	1	20131			11688	4785	6786	6932	9281	9281					0.01686676286283273
KFTDVAEI	8	Unmodified						0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	461.74765	921.480748	0.62242	0.0002874	-0.43861	-0.00020253	0.1838	8.487E-05	461.747042409586	20.549	0.16861	20.535	20.487	20.656	-0.014141	1320	43	0.824661	0.025853395	0.8231416	335.24698		10.510132	-0.018998	0.0003696	-0.00075972	NaN	27.789	138	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22772			11689	4785	6786	6932							0.01686676286283273
KFTEAYGS	8	Unmodified	_KFTEAYGS_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4254241167	1	902.425424	901.418148	1.6731	0.0015098	1.4097	0.0012722	3.0828	0.002782	902.4254459831378	29.329	0.072388	29.329	29.305	29.377	0	411	49	1.3751161	0.028591871	1.3751161	279.60696	0	5.81369						57	4	2	NaN	NaN	NaN	0.74229	1	6100	6100		16.417	1.2413	1	3532			11690	2072	6787	6933	9282	9282					-0.036504697819054854
KFTPMKLIL	9	Unmodified	_KFTPMKLIL_					0	0	0		tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8382882223001	2	545.838288	1089.66202	1.1742	0.00064094	-7.8024	-0.0042589	-6.6282	-0.0036179	545.8343347358784	27.035	0.09656	27.025	26.977	27.074	-0.010124	1194	37	0.902037	0.022057295	0.9005176	365.8699	0	8.946533						120	5	3	NaN	NaN	NaN	0.56671	1	12093	12093		6.8632	1.1691	1	12227			11691	13803	6788	6934	9283	9283					0.12077898058487335
KFTPMKLIL	9	Unmodified						0	0	0		tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	tr|U7SPU4|U7SPU4_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01705PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.838288	1089.66202	1.1215	0.00061216	-7.6084	-0.004153	-6.4869	-0.0035408	545.8344311262978	26.988	0.096479	26.988	26.94	27.036	0	1191	40	0.90387505	0.023894131	0.90387505	366.6154		9.691559	-0.018692	9.433E-05	0.0016787	NaN	6.8632	100	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12881			11692	13803	6788	6934							0.12077898058487335
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.79493496365	2	512.794935	1023.57532	2.0353	0.0010437	-1.6261	-0.00083385	0.40926	0.00020987	512.7942847051295	16.422	0.11988	16.422	16.374	16.494	0	1311	46	0.83019954	0.027686596	0.83019954	337.0036	0	11.238861						142	6	3	NaN	NaN	NaN	0.019716	1	9530	9530		72.358	41.748	1	20171			11693	4041	6789	6935	9284	9284					0.0644723482827203
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.79493496365	2	512.794935	1023.57532	1.5643	0.00080215	-1.338	-0.0006861	0.22631	0.00011605	512.7941524843794	16.587	0.1438	16.574	16.478	16.621	-0.012995	1311	52	0.83019954	0.031374753	0.8286801	337.0036	0	12.735992						155	7	3	NaN	NaN	NaN	0.053204	1	9350	9350		45.55	23.779	1	18971			11694	4041	6789	6935	9285	9285					0.0644723482827203
KFWDYLQEF	9	Unmodified	_KFWDYLQEF_					0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENSG00000076258|ENST00000367749|FMO4;ENST00000462992.1_1_1:171292253-171302174:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3058637907001	2	638.305864	1274.59717	1.7174	0.0010962	-0.93725	-0.00059825	0.78018	0.00049799	638.30505429084	30.318	0.1448	30.318	30.294	30.439	0	1128	58	0.9424274	0.034846902	0.9424274	381.55905	0	14.108398						201	7	3	NaN	NaN	NaN	0.21451	1	18306	18306		24.4	7.5419	1	20879			11695	854	6790	6936	9286	9286					-0.02914005213801829
KFWDYLQEF	9	Unmodified						0	0	0		ENST00000475780.5_1_1:171285408-171306524:+|nuORF;ENSG00000076258|ENST00000367749|FMO4;ENST00000462992.1_1_1:171292253-171302174:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	ENST00000475780.5_1_1:171285408-171306524:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	638.305864	1274.59717	1.3424	0.00085686	0.14837	9.4706E-05	1.4908	0.00095157	638.8093085102629	30.414	0.16889	30.407	30.287	30.456	-0.0064106	1128	73	0.9424274	0.044005275	0.94090796	381.55902		17.816345	0.044554	0.00072763	-0.00075972	NaN	24.4	297	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25479			11696	854	6790	6936							-0.02914005213801829
KFYIASDVWSF	11	Unmodified	_KFYIASDVWSF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8400707488	2	681.840071	1361.66559	1.8906	0.0012891	0.14439	9.8451E-05	2.0349	0.0013875	681.8369375303699	30.101	0.1207	30.101	30.077	30.198	0	1065	52	0.9808926	0.03110826	0.9808926	396.86005	0	12.586121						144	6	3	NaN	NaN	NaN	0.58035	1	19700	19700		15.311	2.2098	1	12000			11697	4134	6791	6937	9287	9287					-0.000777606339624981
KFYIASDVWSF	11	Unmodified	_KFYIASDVWSF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.8400707488	2	681.840071	1361.66559	1.1358	0.00077441	-1.8486	-0.0012604	-0.71281	-0.00048602	681.8395026731502	30.148	0.12068	30.142	30.094	30.214	-0.0064106	1065	43	0.9808926	0.025617182	0.97937316	396.86005	0	10.364471						141	6	3	NaN	NaN	NaN	0.58035	1	18792	18792		15.311	8.3266	1	11404			11698	4134	6791	6937	9288	9288					-0.000777606339624981
KFYLDQNN	8	Unmodified	_KFYLDQNN_					0	0	0			REV__tr|U7SPD4|U7SPD4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01828PE=4SV=1	REV__tr|U7SPD4|U7SPD4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01828PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.25363125495	2	521.253631	1040.49271	1.1045	0.00057571	-2.6003	-0.0013554	-1.4958	-0.00077969	521.2525131593094	28.17	0.14485	28.161	28.088	28.233	-0.0089779	1266	58	0.85786515	0.03502047	0.8563457	348.1588	0	14.21283						259	7	5	NaN	NaN	NaN	0.83913	1	10007	10007		3.9685	0.81517	1	35769	+		11699	13459	6792	6938	9289	9289					-0.025917069705201357
KFYLDQNN	8	Unmodified						0	0	0			REV__tr|U7SPD4|U7SPD4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01828PE=4SV=1	REV__tr|U7SPD4|U7SPD4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01828PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.253631	1040.49271	1.1045	0.00057571	-2.6003	-0.0013554	-1.4958	-0.00077969	521.2525131593094	28.17	0.14485	28.161	28.088	28.233	-0.0089779	1266	58	0.85786515	0.03502047	0.8563457	348.1588		14.21283	0.031336	0.00051038	-0.00075972	NaN	3.9685	259	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35769	+		11700	13459	6792	6938							-0.025917069705201357
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2714896571	2	584.27149	1166.52843	1.6258	0.00094992	0.15338	8.9615E-05	1.7792	0.0010395	584.2716238723166	22.91	0.24104	22.896	22.824	23.065	-0.01354	1191	76	0.90387505	0.045970082	0.9023556	366.31357	0	18.63031						231	11	2	NaN	NaN	NaN	0.12328	1	14817	14817		32.453	16.036	1	64077			11701	2804	6793	6939	9290	9290					-0.0481766951352256
KGAAGGVM	8	Unmodified	_KGAAGGVM_					0	0	0		ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L	ENSG00000145087|ENST00000471454|STXBP5L	ENSG00000145087|ENST00000471454|STXBP5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.0536	0.00072738	2.9946	0.0020674	4.0483	0.0027948	690.363024249606	31.042	0.19311	31.042	30.946	31.139	0	756	88	1.1683017	0.05243802	1.1683017	238.65068	0	10.711594						278	9	2	NaN	NaN	NaN	0.84207	1	3010	3010		3.5732	2.1337	1	27093			11702	3503	6794	6940	9291	9291					-0.004057427887460108
KGAAGGVM	8	Unmodified						0	0	0		ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L	ENSG00000145087|ENST00000471454|STXBP5L	ENSG00000145087|ENST00000471454|STXBP5L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	1.0941	0.00075532	3.6825	0.0025423	4.7766	0.0032976	690.3631494962993	31.041	0.16896	31.036	30.964	31.133	-0.0050716	750	100	1.1719203	0.05965805	1.1704009	239.38985		12.186447	-0.0030557	0.00016755	0.0010496	NaN	3.5732	336	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32384			11703	3503	6794	6940							-0.004057427887460108
KGAARGGGG	9	Unmodified	_KGAARGGGG_					0	0	0			REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF	REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.3954613923003	1	730.395461	729.388185	1.4255	0.0010412	4.736	0.0034591	6.1615	0.0045003	730.3992169433614	21.561	0.096369	21.561	21.537	21.633	0	585	46	1.2711272	0.026975632	1.2711272	259.37735	0	5.5044556						95	5	2	NaN	NaN	NaN	0.6907	1	3753	3753		0	0	1	8799.5	+		11704	12415	6795	6941	9292	9292					0.012666360634398188
KGAARGGGG	9	Unmodified						0	0	0			REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF	REV__ENST00000485324.1_1_X:152959425-152959824:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	730.395461	729.388185	1.4255	0.0010412	4.736	0.0034591	6.1615	0.0045003	730.3992169433614	21.561	0.096369	21.561	21.537	21.633	0	585	46	1.2711272	0.026975632	1.2711272	259.37735		5.5044556	0.0069549	0.00057997	0.00075972	NaN	0	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8799.5	+		11705	12415	6795	6941							0.012666360634398188
KGAGQHLP	8	Unmodified	_KGAGQHLP_					0	0	0		nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	nc|ENSG00000023734|Q9Y3F4-2|STRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.2272195392	2	404.22722	806.439886	1.7902	0.00072365	-0.77138	-0.00031181	1.0188	0.00041184	404.2267143773503	16.539	0.19176	16.526	16.454	16.645	-0.012995	1473	85	0.7302302	0.05194837	0.7287108	297.47946	0	21.162628						373	9	3	NaN	NaN	NaN	0.62311	1	4752	4752		23.85	0	1	89702			11706	7898	6796	6942	9293	9293					0.02892379757327035
KGAGRGGG	8	Unmodified	_KGAGRGGG_					0	0	0		ENST00000254190.3_1_15:101791750-101792119:-|nuORF	ENST00000254190.3_1_15:101791750-101792119:-|nuORF	ENST00000254190.3_1_15:101791750-101792119:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.5291	0.0010083	-0.44956	-0.00029642	1.0796	0.00071183	659.3581554897122	33.913	0.50688	33.911	33.743	34.249	-0.0012474	795	190	1.1447623	0.11425972	1.1432428	234.05653	0	23.36139						964	22	2	NaN	NaN	NaN	0.84692	1	2187	2187		1.4396	0	1	489450			11707	6284	6797	6943	9294	9294					0.008229645176697886
KGAMGPAG	8	Unmodified	_KGAMGPAG_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3446713752002	1	688.344671	687.337395	1.0042	0.00069124	6.0289	0.00415	7.0331	0.0048412	688.3496178967771	35.601	0.1447	35.602	35.553	35.698	0.00053024	771	43	1.1592519	0.025343299	1.1577325	236.81558	0	5.177231						94	7	2	NaN	NaN	NaN	0.84887	1	2899	2899		0.32989	0	1	5980.3			11708	692	6798	6944	9295	9295					-0.018780293057830022
KGASFMAT	8	Unmodified	_KGASFMAT_					0	0	0		tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7STA9|U7STA9_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.3971008762002	1	812.397101	811.389824	1.4447	0.0011737	4.8947	0.0039765	6.3395	0.0051502	812.4006177251605	28.821	0.12066	28.813	28.765	28.885	-0.0083504	471	49	1.3393306	0.028661966	1.3378111	272.7845	0	5.8376465						135	6	2	NaN	NaN	NaN	0.81756	1	4809	4809		6.8632	0.77288	1	10368			11709	13850	6799	6945	9296	9296					-0.023414909628286296
KGAVEIIF	8	Unmodified	_KGAVEIIF_					0	0	0		ENST00000473073.1_1_3:136045962-136048865:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.5189305714002	1	876.518931	875.511654	1.836	0.0016092	-1.9347	-0.0016958	-0.098791	-8.6593E-05	876.5170551492218	26.143	0.14482	26.131	26.035	26.18	-0.011137	360	52	1.405474	0.030325532	1.4039545	285.90686	0	6.1689453						103	7	2	NaN	NaN	NaN	0.49126	1	5611	5611		31.561	6.6	1	9459.5			11710	1939	6800	6946	9297	9297					0.068918743912036
KGAVEIIF	8	Unmodified						0	0	0		ENST00000473073.1_1_3:136045962-136048865:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	876.518931	875.511654	2.0179	0.0017688	-2.2714	-0.0019909	-0.25347	-0.00022218	876.5176167932526	26.119	0.096558	26.119	26.07	26.167	0	360	49	1.405474	0.028546333	1.405474	285.90686		5.807007	-0.0063795	-0.00017989	0.00075972	NaN	31.561	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8995.3			11711	1939	6800	6946							0.068918743912036
KGAVGGTK	8	Unmodified	_KGAVGGTK_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.4253645372	1	717.425365	716.418088	0.60916	0.00043703	2.95	0.0021164	3.5592	0.0025534	717.4270990512347	40.609	0.1441	40.609	40.561	40.705	0	657	61	1.2279087	0.036061764	1.2279087	250.64212	0	7.360962						207	7	3	NaN	NaN	NaN	0.84756	1	3544	3544		1.072	0	1	28550	+		11712	11363	6801	6947	9298	9298					0.04853575008758071
KGAVGGTK	8	Unmodified						0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	717.425365	716.418088	0.60916	0.00043703	2.95	0.0021164	3.5592	0.0025534	717.4270990512347	40.609	0.1441	40.609	40.561	40.705	0	657	61	1.2279087	0.036061764	1.2279087	250.64212		7.360962	-0.0023592	0.00041917	-0.00014178	NaN	1.072	207	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28550	+		11713	11363	6801	6947							0.04853575008758071
KGAVGGTK	8	Unmodified						0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.425365	716.418088	0.83646	0.0006001	1.8208	0.0013063	2.6573	0.0019064	717.4263455489853	40.607	0.12014	40.613	40.541	40.661	0.0067596	654	70	1.2297117	0.04147768	1.2281922	251.01015		8.466461	0.0023592	-0.00039091	0.00014178	NaN	1.072	217	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29369	+		11714	11363	6801	6947							0.04853575008758071
KGDFQYHMTQH	11	Unmodified	_KGDFQYHMTQH_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.5435493806	3	464.543549	1390.60882	0.9387	0.00043607	-1.3668	-0.00063495	-0.42813	-0.00019889	464.8766845137833	14.284	0.09583	14.273	14.249	14.345	-0.011219	1506	34	0.70979416	0.02044928	0.7082747	430.67105	0	12.407745						67	5	2	NaN	NaN	NaN	0.6875	1	19045	19045		3.9007	1.1117	1	5221.4	+		11715	9207	6802	6948	9299	9299					-0.07086131462119738
KGDFQYHMTQH	11	Unmodified						0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	464.543549	1390.60882	1.343	0.00062386	-1.28	-0.0005946	0.062988	2.9261E-05	464.5426001498529	14.141	0.048076	14.141	14.117	14.165	0	1503	34	0.711653	0.02044487	0.711653	431.7989		12.405029	-0.06611	5.3603E-05	0.0016891	NaN	3.9007	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4021	+		11716	9207	6802	6948							-0.07086131462119738
KGDFQYHMTQH	11	Unmodified						0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	464.543549	1390.60882	0.9387	0.00043607	-1.3668	-0.00063495	-0.42813	-0.00019889	464.8766845137833	14.284	0.09583	14.273	14.249	14.345	-0.011219	1506	34	0.70979416	0.02044928	0.7082747	430.67105		12.407745	0.06611	-6.7447E-05	-0.0016891	NaN	3.9007	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5221.4	+		11717	9207	6802	6948							-0.07086131462119738
KGDGDQVV	8	Unmodified	_KGDGDQVV_					0	0	0			REV__EPB41L2|p.R593K|1|0.13|ENSG00000079819|chr6:130885151-130885151|C/T|missense_variant	REV__EPB41L2|p.R593K|1|0.13|ENSG00000079819|chr6:130885151-130885151|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.20614974610004	2	409.20615	816.397747	1.6893	0.00069125	3.566	0.0014592	5.2553	0.0021505	409.20681019481174	55.1	0.048161	55.1	55.076	55.124	0	1464	28	0.73579943	0.01670587	0.73579943	299.68716	0	6.804199						37	3	2	NaN	NaN	NaN	0.84782	1	4972	4972		0.92586	0.5302	1	2495	+		11718	12988	6803	6949	9300	9300					-0.01779640441702668
KGEWVALNP	9	Unmodified	_KGEWVALNP_					0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000496761.1_1_1:196621247-196642313:+|nuORF	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.27436669705	2	507.274367	1012.53418	1.7515	0.0008885	7.3968	0.0037522	9.1483	0.0046407	507.27809196041983	30.872	0.096565	30.866	30.818	30.915	-0.0057545	1299	31	0.8375814	0.01844871	0.83606195	340.0493	0	7.4900208						50	5	2	NaN	NaN	NaN	0.41766	1	8909	8909		13.003	1.4544	1	3026.9			11719	291	6804	6950	9301	9301					0.028414737888056152
KGEWVALNP	9	Unmodified						0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000496761.1_1_1:196621247-196642313:+|nuORF	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.274367	1012.53418	1.2986	0.00065874	5.8741	0.0029798	7.1727	0.0036385	507.2780344487178	30.873	0.048241	30.873	30.849	30.897	0	1296	31	0.8394264	0.01844871	0.8394264	340.79834		7.48999	0.0034287	-0.00084507	0.0016822	NaN	13.003	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3105.1			11720	291	6804	6950							0.028414737888056152
KGFGGSAK	8	Unmodified	_KGFGGSAK_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.20849546979997	2	376.208495	750.402438	1.3254	0.00049864	-0.62195	-0.00023398	0.70349	0.00026466	376.2080499313998	28.556	0.16889	28.547	28.451	28.62	-0.0083504	1419	55	0.76361835	0.03336644	0.7620989	311.46878	0	13.60968						144	8	3	NaN	NaN	NaN	0.8439	1	3989	3989		3.1533	0	1	11291	+		11721	9026	6805	6951	9302	9302					0.017252884917070332
KGFGGSAK	8	Unmodified						0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	376.208495	750.402438	1.6089	0.00060528	0.31157	0.00011721	1.9205	0.0007225	376.20923472881947	28.508	0.096569	28.508	28.46	28.556	0	1416	43	0.76547134	0.025946021	0.76547134	312.22458		10.583008	-0.019594	0.00030947	0.0016862	NaN	3.1533	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5662.5	+		11722	9026	6805	6951							0.017252884917070332
KGFGGSAK	8	Unmodified						0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	376.208495	750.402438	1.3254	0.00049864	-0.62195	-0.00023398	0.70349	0.00026466	376.2080499313998	28.556	0.16889	28.547	28.451	28.62	-0.0083504	1419	55	0.76361835	0.03336644	0.7620989	311.46878		13.60968	0.019594	-0.00039293	-0.0016862	NaN	3.1533	144	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11291	+		11723	9026	6805	6951							0.017252884917070332
KGFNAALKV	9	Unmodified	_KGFNAALKV_					0	0	0			REV__ENSG00000071189|ENST00000428135|SNX13	REV__ENSG00000071189|ENST00000428135|SNX13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.5672777475	1	947.567278	946.560001	1.8445	0.0017478	-11.56	-0.010954	-9.7154	-0.009206	947.556630079827	56.085	0.024036	56.085	56.061	56.085	0	279	34	1.4535767	0.019568324	1.4535767	295.34863	0	3.9760437						42	2	2	NaN	NaN	NaN	0.63698	1	7003	7003		3.9685	1.7922	1	3946.3	+		11724	8576	6806	6952	9303	9303					0.08458368031085683
KGFNAALKV	9	Unmodified						0	0	0			REV__ENSG00000071189|ENST00000428135|SNX13	REV__ENSG00000071189|ENST00000428135|SNX13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	947.567278	946.560001	1.8445	0.0017478	-11.56	-0.010954	-9.7154	-0.009206	947.556630079827	56.085	0.024036	56.085	56.061	56.085	0	279	34	1.4535767	0.019568324	1.4535767	295.34863		3.9760437	0.0013502	-0.00069529	-0.00012975	NaN	3.9685	42	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3946.3	+		11725	8576	6806	6952							0.08458368031085683
KGGAARGP	8	Unmodified	_KGGAARGP_					0	0	0			REV__nc|ENSG00000183955|Q9NQR1|KMT5A	REV__nc|ENSG00000183955|Q9NQR1|KMT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.4052977971	1	713.405298	712.398021	1.9484	0.00139	4.5652	0.0032569	6.5136	0.0046468	713.4085343392957	25.37	0.072376	25.358	25.334	25.407	-0.012011	588	49	1.2693287	0.028784633	1.2678093	259.12424	0	5.876175						77	4	2	NaN	NaN	NaN	0.84887	1	3405	3405		0.32989	0	1	5322.3	+		11726	13193	6807	6953	9304	9304					0.030318240687961406
KGGANLEL	8	Unmodified	_KGGANLEL_					0	0	0			REV__ENST00000399132.5_2_4:110223628-110223712:-|nuORF	REV__ENST00000399132.5_2_4:110223628-110223712:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.4464939097999	1	801.446494	800.439217	1.11	0.00088959	4.3556	0.0034907	5.4655	0.0043803	801.4498153385828	32.344	0.096519	32.341	32.316	32.413	-0.0037613	453	52	1.3500742	0.030429125	1.3485547	275.03528	0	6.1989746						122	5	2	NaN	NaN	NaN	0.65075	1	4661	4661		22.126	3.008	1	13688	+		11727	12027	6808	6954	9305	9305					0.031015403175956635
KGGARGGG	8	Unmodified	_KGGARGGG_					0	0	0			REV__CON__Q3SZH5	REV__CON__Q3SZH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	2.0318	0.0013397	0.34043	0.00022447	2.3723	0.0015642	659.3569842599371	23.272	0.14477	23.258	23.21	23.355	-0.013294	786	127	1.1501974	0.076071024	1.148678	235.16779	0	15.55336						582	7	3	NaN	NaN	NaN	0.84692	1	2192	2192		1.4396	0	1	119500	+	+	11728	8279	6809	6955	9306	9306					0.008229645176697886
KGGASSTK	8	Unmodified	_KGGASSTK_					0	0	0			REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.3995437172	1	735.399544	734.392267	1.7871	0.0013142	-6.5779	-0.0048374	-4.7909	-0.0035232	735.396040548557	25.226	0.096462	25.214	25.189	25.286	-0.012011	573	82	1.2783196	0.04855597	1.2768002	260.81223	0	9.906738						161	5	2	NaN	NaN	NaN	0.84512	1	3745	3745		2.4615	0	1	16289	+		11729	11802	6810	6956	9307	9307					0.014446807664739936
KGGASSTK	8	Unmodified						0	0	0			REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	735.399544	734.392267	1.6935	0.0012454	-4.2008	-0.0030893	-2.5073	-0.0018439	735.3966060836232	25.371	0.12064	25.371	25.322	25.443	0	564	76	1.2837118	0.044939995	1.2837118	261.91238		9.169006	0.07849	0.00031298	0.0034558	NaN	2.4615	190	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17180	+		11730	11802	6810	6956							0.014446807664739936
KGGASSTK	8	Unmodified						0	0	0			REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	REV__ENST00000348993.9_1_15:85184417-85184501:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	735.399544	734.392267	1.7871	0.0013142	-6.5779	-0.0048374	-4.7909	-0.0035232	735.396040548557	25.226	0.096462	25.214	25.189	25.286	-0.012011	573	82	1.2783196	0.04855597	1.2768002	260.81223		9.906738	-0.07849	-0.0014352	-0.0034558	NaN	2.4615	161	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16289	+		11731	11802	6810	6956							0.014446807664739936
KGGFGGGM	8	Unmodified	_KGGFGGGM_					0	0	0			REV__XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	REV__XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3290213110001	1	710.329021	709.321745	0.79439	0.00056428	8.2788	0.0058807	9.0732	0.0064449	710.3354050995572	33.985	0.14483	33.984	33.936	34.08	-0.0012474	615	118	1.2531329	0.07027149	1.2516136	255.83891	0	14.346588						400	7	4	NaN	NaN	NaN	0.84887	1	3344	3344		0.32989	0.32989	1	80860	+		11732	10159	6811	6957	9308	9308					-0.04454315822829358
KGGGDNIF	8	Unmodified	_KGGGDNIF_					0	0	0		ENST00000426778.5_1_2:128014926-128015172:-|nuORF	ENST00000426778.5_1_2:128014926-128015172:-|nuORF	ENST00000426778.5_1_2:128014926-128015172:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.3995437172	1	807.399544	806.392267	1.1354	0.0009167	3.9319	0.0031746	5.0673	0.0040913	807.4033697904409	32.489	0.21719	32.486	32.438	32.655	-0.0031013	495	88	1.3249949	0.052008152	1.3234755	269.89255	0	10.5937195						272	10	3	NaN	NaN	NaN	0.49126	1	4745	4745		31.561	0	1	34341			11733	6948	6812	6958	9309	9309					-0.018673192335313615
KGGGEGGA	8	Unmodified	_KGGGEGGA_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.6535530696	2	316.653553	631.292553	1.8625	0.00058977	2.2331	0.00070712	4.0956	0.0012969	316.6556212962609	45.694	0.31202	45.694	45.598	45.91	0	1515	121	0.7042165	0.07438141	0.7042165	288.20755	0	30.441345						838	14	5	NaN	NaN	NaN	0.84887	1	1504	1504		0.32989	0	1	121930			11734	2331	6813	6959	9310	9310					-0.03784136847480113
KGGGEGGA	8	Unmodified	_KGGGEGGA_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.6535530696	2	316.653553	631.292553	1.2465	0.00039471	3.1703	0.0010039	4.4168	0.0013986	316.65568697957417	41.642	0.12026	41.642	41.57	41.69	0	1533	127	0.6930556	0.07810897	0.6930556	283.63986	0	31.966888						384	6	3	NaN	NaN	NaN	0.84887	1	1505	1505		0.32989	0	1	55867			11735	2331	6813	6959	9311	9311					-0.03784136847480113
KGGGEGGA	8	Unmodified	_KGGGEGGA_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.6535530696	2	316.653553	631.292553	0.67038	0.00021228	5.4831	0.0017362	6.1535	0.0019485	316.6557267362998	44.326	0.16788	44.338	44.218	44.386	0.011646	1530	46	0.6949163	0.027906656	0.69339687	284.40134	0	11.421082						140	8	2	NaN	NaN	NaN	0.84887	1	1430	1430		0.32989	0	1	10223			11736	2331	6813	6959	9312	9312					-0.03784136847480113
KGGGGGAG	8	Unmodified	_KGGGGGAG_					0	0	0		ENST00000431489.5_1_2:62932877-62932922:+|nuORF;nc|ENSG00000130675|P50219-2|MNX1;ENSG00000130675|ENST00000252971|MNX1	ENST00000431489.5_1_2:62932877-62932922:+|nuORF	ENST00000431489.5_1_2:62932877-62932922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2787003000001	1	560.2787	559.271424	1.9705	0.001104	-0.42631	-0.00023885	1.5442	0.00086519	560.2779734163994	16.35	0.095938	16.35	16.35	16.446	0	1251	25	0.8670771	0.014736712	0.8670771	177.91908	0	3.02388						53	5	2	NaN	NaN	NaN	0.84945	1	467	467		0	0	1	2695.8			11737	6972	6814	6960	9313	9313					-0.025841021563337563
KGGGGGAGR	9	Unmodified	_KGGGGGAGR_					0	0	0		ENST00000431489.5_1_2:62932877-62932922:+|nuORF	ENST00000431489.5_1_2:62932877-62932922:+|nuORF	ENST00000431489.5_1_2:62932877-62932922:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3798113281001	1	716.379811	715.372535	1.9658	0.0014083	3.857	0.0027631	5.8228	0.0041713	716.3823405999536	25.25	0.09646	25.238	25.214	25.31	-0.012011	633	40	1.2423272	0.023421288	1.2408078	253.5922	0	4.7809143						71	5	2	NaN	NaN	NaN	0.67989	1	3449	3449		0.92586	0	1	4737.8			11738	6972	6815	6961	9314	9314					0.003463495463847721
KGGGGGGQ	8	Unmodified	_KGGGGGGQ_					0	0	0			REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3001640236	1	617.300164	616.292888	0.62307	0.00038462	-5.1342	-0.0031694	-4.5112	-0.0027847	617.2970107360547	29.256	0.14476	29.248	29.224	29.368	-0.0077229	804	94	1.1393254	0.056198835	1.1378059	233.26813	0	11.506271						264	7	2	NaN	NaN	NaN	0.84945	1	989	989		0	0	1	32074	+		11739	12520	6816	6962	9315	9315					-0.030607171276187728
KGGGGGGQ	8	Unmodified						0	0	0			REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	617.300164	616.292888	0.93061	0.00057446	-4.4632	-0.0027552	-3.5326	-0.0021807	617.2980598510412	29.256	0.048256	29.256	29.232	29.28	0	804	85	1.1393254	0.050752044	1.1393254	233.26813		10.391098	0.0042463	0.00033731	0.00075972	NaN	0	94	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6283.9	+		11740	12520	6816	6962							-0.030607171276187728
KGGGGGGQ	8	Unmodified						0	0	0			REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	REV__ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	617.300164	616.292888	0.62307	0.00038462	-5.1342	-0.0031694	-4.5112	-0.0027847	617.2970107360547	29.256	0.14476	29.248	29.224	29.368	-0.0077229	804	94	1.1393254	0.056198835	1.1378059	233.26813		11.506271	-0.0042463	-7.6895E-05	-0.00075972	NaN	0	264	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32074	+		11741	12520	6816	6962							-0.030607171276187728
KGGGGGGS	8	Unmodified	_KGGGGGGS_					0	0	0		nc|ENSG00000090372|Q9NRL3-3|STRN4;ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000248713|ENST00000511828|C4orf54;nc|ENSG00000090372|Q9NRL3-3|STRN4	nc|ENSG00000090372|Q9NRL3-3|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2736149221	1	576.273615	575.266338	0.94594	0.00054512	-9.0963	-0.005242	-8.1504	-0.0046969	576.2686535903405	27.735	0.072386	27.726	27.677	27.75	-0.009552	1215	76	0.8891654	0.045984983	0.88764596	182.3309	0	9.429611						101	4	2	NaN	NaN	NaN	0.84727	1	499	499		1.2418	0	1	20804			11742	11363;1055	6817	6963	9316	9316					-0.03828406018953956
KGGGGGNH	8	Unmodified	_KGGGGGNH_					0	0	0			REV__ENSG00000217236|ENST00000394967|SP9	REV__ENSG00000217236|ENST00000394967|SP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1646192824	2	342.164619	682.314686	1.5374	0.00052605	3.0218	0.0010339	4.5592	0.00156	342.1651979701327	26.866	0.12066	26.856	26.808	26.928	-0.010645	1512	37	0.7060759	0.022311985	0.70455647	288.51187	0	9.116943						85	6	2	NaN	NaN	NaN	0.84887	1	2799	2799		0.32989	0.054495	1	9988.7	+		11743	11301	6818	6964	9317	9317					-0.03917912379051813
KGGGGGNS	8	Unmodified	_KGGGGGNS_					0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.2950786457001	1	633.295079	632.287802	1.906	0.0012071	-9.5008	-0.0060168	-7.5948	-0.0048098	633.2888522178196	25.419	0.048275	25.419	25.371	25.419	0	834	58	1.12119	0.034466624	1.12119	229.42918	0	7.052902						78	3	2	NaN	NaN	NaN	0.84727	1	1515	1515		1.2418	0	1	8367.6	+		11744	10143	6819	6965	9318	9318					-0.043050209902389724
KGGGGGNS	8	Unmodified						0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	633.295079	632.287802	1.906	0.0012071	-9.5008	-0.0060168	-7.5948	-0.0048098	633.2888522178196	25.419	0.048275	25.419	25.371	25.419	0	834	58	1.12119	0.034466624	1.12119	229.42918		7.052902	0.018212	-0.0011173	-0.0010546	NaN	1.2418	78	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8367.6	+		11745	10143	6819	6965							-0.043050209902389724
KGGGGGRA	8	Unmodified	_KGGGGGRA_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	0.48926	0.0003226	-5.0939	-0.0033587	-4.6047	-0.0030361	659.3548974311693	35.12	0.19308	35.12	35.096	35.289	0	1401	40	0.77473325	0.024073124	0.77473325	158.40092	0	4.9219666						129	9	3	NaN	NaN	NaN	0.84945	1	2239	2239		0	0	1	15176			11746	4996	6820	6966	9319	9319					0.008229645176470513
KGGGGGRA	8	Unmodified	_KGGGGGRA_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045	1	659.358348	658.351071	1.8645	0.0012294	-3.2973	-0.0021741	-1.4328	-0.00094471	659.3559344026709	25.467	0.16883	25.467	25.443	25.612	0	786	145	1.1501974	0.086919785	1.1501974	235.1678	0	17.77147						416	8	2	NaN	NaN	NaN	0.84887	1	2243	2243		0.32989	0	1	54309			11747	4996	6820	6966	9320	9320					0.008229645176470513
KGGGGGRA	8	Unmodified	_KGGGGGRA_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.1247	0.0007416	-5.1748	-0.0034121	-4.0501	-0.0026705	659.35546814119	35.119	0.096546	35.119	35.094	35.191	-4.5776E-05	1401	37	0.77473325	0.022220135	0.7732138	158.40092	0	4.5431213						111	5	3	NaN	NaN	NaN	0.84945	1	2157	2157		0	0	1	12231			11748	4996	6820	6966	9321	9321					0.008229645176470513
KGGGGGRA	8	Unmodified	_KGGGGGRA_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	1.0482	0.00069115	-4.5213	-0.0029811	-3.473	-0.00229	659.355652722637	35.094	0.24134	35.094	35.022	35.263	-4.5776E-05	669	148	1.2206948	0.088535786	1.2191753	249.58162	0	18.101929						314	11	2	NaN	NaN	NaN	0.84887	1	2158	2158		0.32989	0	1	28115			11749	4996	6820	6966	9322	9322					0.008229645176470513
KGGGGGRA	8	Unmodified	_KGGGGGRA_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045	1	659.358348	658.351071	0.71011	0.00046822	-1.8438	-0.0012158	-1.1337	-0.00074753	659.3574167028064	33.647	0.07235	33.645	33.621	33.694	-0.0018463	810	88	1.1356999	0.052528024	1.1341804	232.20366	0	10.739792						131	4	2	NaN	NaN	NaN	0.84887	1	2164	2164		0.32989	0	1	11521			11750	4996	6820	6966	9323	9323					0.008229645176470513
KGGGGGRA	8	Unmodified						0	0	0		ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	2.0199	0.0013318	-2.6096	-0.0017207	-0.58969	-0.00038882	659.3564517358545	25.684	0.096466	25.672	25.6	25.696	-0.0116	795	148	1.1447623	0.08867824	1.1432428	234.05655		18.131027	0.10262	0.00028099	-0.0034773	NaN	0.32989	343	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45214			11751	4996	6820	6966							0.008229645176470513
KGGGGRGG	8	Unmodified	_KGGGGRGG_					0	0	0		ARID3A|p.G554R|1|0.26|ENSG00000116017|chr19:971943-971943|G/C|missense_variant;ENST00000406438.4_1_17:18230495-18230729:+|nuORF	ARID3A|p.G554R|1|0.26|ENSG00000116017|chr19:971943-971943|G/C|missense_variant	ARID3A|p.G554R|1|0.26|ENSG00000116017|chr19:971943-971943|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3426975403002	1	645.342698	644.335421	1.7795	0.0011484	-0.63367	-0.00040893	1.1458	0.00073943	645.3422365389663	22.404	0.12028	22.39	22.342	22.462	-0.013733	780	88	1.1538198	0.052556157	1.1523004	236.0128	0	10.75032						122	6	2	NaN	NaN	NaN	0.84887	1	1776	1776		0.32989	0	1	9233.7			11752	46	6821	6967	9324	9324					-0.0009732199937388941
KGGGGTGT	8	Unmodified	_KGGGGTGT_					0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.6613781017	2	317.661378	633.308203	1.8429	0.00058542	3.8384	0.0012193	5.6813	0.0018047	317.6630692164058	47.492	0.38343	47.492	47.42	47.803	0	1524	64	0.698637	0.039048076	0.698637	285.90485	0	15.979767						305	17	3	NaN	NaN	NaN	0.84887	1	1558	1558		0.32989	0	1	29774	+		11753	12199	6822	6968	9325	9325					-0.02311850330420384
KGGGGTGT	8	Unmodified						0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.661378	633.308203	1.8429	0.00058542	3.8384	0.0012193	5.6813	0.0018047	317.6630692164058	47.492	0.38343	47.492	47.42	47.803	0	1524	64	0.698637	0.039048076	0.698637	285.90485		15.979767	-0.050897	-0.00049427	0.0016898	NaN	0.32989	305	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29774	+		11754	12199	6822	6968							-0.02311850330420384
KGGGGTGT	8	Unmodified						0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	317.661378	633.308203	0.24852	7.8945E-05	7.4008	0.0023509	7.6493	0.0024299	317.66399897226563	47.586	0.1198	47.594	47.594	47.713	0.0074158	1527	37	0.69677675	0.022319257	0.6952573	285.14355		9.133759	0.050897	0.001769	-0.0016898	NaN	0.32989	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5762.3	+		11755	12199	6822	6968							-0.02311850330420384
KGGGRGAG	8	Unmodified	_KGGGRGAG_					0	0	0			REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.1563	0.00076241	-0.71424	-0.00047094	0.44206	0.00029147	659.3581157670895	27.952	0.16891	27.943	27.87	28.039	-0.009552	789	139	1.1483859	0.083271265	1.1468664	234.79741	0	17.025528						523	8	2	NaN	NaN	NaN	0.84727	1	2181	2181		1.2418	0.91196	1	50987	+		11756	12650	6823	6969	9326	9326					0.0082296451765842
KGGGRGAG	8	Unmodified						0	0	0			REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.5863	0.0010459	-1.3217	-0.00087145	0.26461	0.00017447	659.3575259830612	28.146	0.096529	28.146	28.05	28.146	0	798	136	1.1429502	0.08143926	1.1429502	233.68604		16.650955	0.10167	-0.00025297	-0.0019581	NaN	1.2418	221	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17697	+		11757	12650	6823	6969							0.0082296451765842
KGGGRGAG	8	Unmodified						0	0	0			REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	REV__ENST00000531840.1_1_11:2416360-2416819:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.1563	0.00076241	-0.71424	-0.00047094	0.44206	0.00029147	659.3581157670895	27.952	0.16891	27.943	27.87	28.039	-0.009552	789	139	1.1483859	0.083271265	1.1468664	234.79741		17.025528	-0.10167	0.00014754	0.0019581	NaN	1.2418	523	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50987	+		11758	12650	6823	6969							0.0082296451765842
KGGGSSSS	8	Unmodified	_KGGGSSSS_					0	0	0		RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant;nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1	RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant	RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.6562927238	2	333.656293	665.298033	1.4727	0.00049139	5.6631	0.0018895	7.1358	0.0023809	333.6585725662467	35.094	0.19308	35.094	35.046	35.239	-4.5776E-05	1533	70	0.6930556	0.042780876	0.6915362	283.33356	0	17.489594						380	9	5	NaN	NaN	NaN	0.84782	1	2373	2373		0.92586	0.59598	1	86414			11759	889	6824	6970	9327	9327					-0.048004580556607834
KGGGSSSS	8	Unmodified						0	0	0		RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant;nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1	RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant	RUNX1T1|p.R473Q|1|0.46|ENSG00000079102|chr8:91970779-91970779|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.656293	665.298033	1.0462	0.00034909	4.2207	0.0014083	5.2669	0.0017573	333.6582300068962	35.096	0.16892	35.096	35.072	35.241	0	1533	82	0.6930556	0.05021012	0.6930556	283.33356		20.526794	0.00073062	-0.00055362	0.00075972	NaN	0.92586	406	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96575			11760	889	6824	6970							-0.048004580556607834
KGGGSWVF	8	Unmodified	_KGGGSWVF_					0	0	0		tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4253645372	1	837.425365	836.418088	1.3914	0.0011652	4.7565	0.0039832	6.148	0.0051485	837.4287739231205	36.469	0.14464	36.47	36.446	36.591	0.0016785	459	43	1.3464937	0.025065899	1.3449743	274.10678	0	5.1026917						140	7	3	NaN	NaN	NaN	0.74229	1	5091	5091		16.417	10.326	1	8638.6			11761	13996	6825	6971	9328	9328					-0.0066642499124327514
KGGGTAIG	8	Unmodified	_KGGGTAIG_					0	0	0			REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3675153073	1	660.367515	659.360239	1.2891	0.00085129	-7.8032	-0.005153	-6.5141	-0.0043017	660.360063871544	26.697	0.096542	26.687	26.614	26.711	-0.010645	768	151	1.1610622	0.090444446	1.1595428	237.38187	0	18.491562						241	5	2	NaN	NaN	NaN	0.84887	1	2208	2208		0.32989	0	1	25534	+		11762	10060	6826	6972	9329	9329					0.01693313083319481
KGGGTSSG	8	Unmodified	_KGGGTSSG_					0	0	0		nc|ENSG00000167106|Q5T9C2-3|EEIG1;nc|ENSG00000167106|Q5T9C2-2|EEIG1;ENSG00000167106|ENST00000373095|EEIG1	nc|ENSG00000167106|Q5T9C2-3|EEIG1	nc|ENSG00000167106|Q5T9C2-3|EEIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.65883541275	2	325.658835	649.303118	1.4592	0.00047521	0.93474	0.00030441	2.394	0.00077962	325.66074485085653	40.438	0.12015	40.445	40.373	40.493	0.0067558	1533	67	0.6930556	0.04093647	0.6915362	283.4737	0	16.743805						351	6	5	NaN	NaN	NaN	0.84727	1	1949	1949		1.2418	0	1	79804			11763	4526	6827	6973	9330	9330					-0.03556154193040584
KGGGVLCG	8	Unmodified	_KGGGVLCG_					0	0	0		ENST00000293443.11_1_17:42430699-42430810:-|nuORF	ENST00000293443.11_1_17:42430699-42430810:-|nuORF	ENST00000293443.11_1_17:42430699-42430810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.1946	0.00082469	3.7346	0.0025782	4.9292	0.0034029	690.3632753394454	31.718	0.28961	31.718	31.597	31.887	0	756	103	1.1683017	0.061488986	1.1683017	238.65068	0	12.56044						409	13	3	NaN	NaN	NaN	0.84727	1	3015	3015		1.2418	0	1	45154			11764	6391	6828	6974	9331	9331					-0.004057427887460108
KGGKGKAG	8	Unmodified	_KGGKGKAG_					0	0	0			REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.4256988882	1	702.425699	701.418422	0.39358	0.00027646	-5.0628	-0.0035562	-4.6692	-0.0032797	702.4222646693971	31.115	0.12066	31.115	31.066	31.187	0	579	58	1.2747238	0.034165382	1.2747238	260.3025	0	6.9766846						129	6	3	NaN	NaN	NaN	0.84945	1	3244	3244		0	0	1	11514	+		11765	12615	6829	6975	9332	9332					0.055769947286080424
KGGKGKAG	8	Unmodified	_KGGKGKAG_					0	0	0			REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.4256988882	1	702.425699	701.418422	1.407	0.00098832	-3.8014	-0.0026702	-2.3944	-0.0016819	702.4240745264152	28.315	0.072369	28.315	28.291	28.363	0	591	37	1.26753	0.02158618	1.26753	258.83347	0	4.407959						50	4	2	NaN	NaN	NaN	0.84945	1	3245	3245		0	0	1	3431.3	+		11766	12615	6829	6975	9333	9333					0.055769947286080424
KGGKGKAG	8	Unmodified	_KGGKGKAG_					0	0	0			REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.4256988882	1	702.425699	701.418422	1.4151	0.00099403	-5.6475	-0.0039669	-4.2324	-0.0029729	702.422576504624	28.339	0.048248	28.33	28.305	28.354	-0.0089779	591	37	1.26753	0.021588564	1.2660105	258.8335	0	4.4084473						46	3	2	NaN	NaN	NaN	0.84945	1	3186	3186		0	0	1	3489.8	+		11767	12615	6829	6975	9334	9334					0.055769947286080424
KGGKGKAG	8	Unmodified						0	0	0			REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	702.425699	701.418422	1.407	0.00098832	-3.8014	-0.0026702	-2.3944	-0.0016819	702.4240745264152	28.315	0.072369	28.315	28.291	28.363	0	591	37	1.26753	0.02158618	1.26753	258.83347		4.407959	-0.0072073	0.00067723	0.00075972	NaN	0	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3431.3	+		11768	12615	6829	6975							0.055769947286080424
KGGKGKAG	8	Unmodified						0	0	0			REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	REV__ENST00000524717.5_1_11:96075672-96075822:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	702.425699	701.418422	1.4151	0.00099403	-5.6475	-0.0039669	-4.2324	-0.0029729	702.422576504624	28.339	0.048248	28.33	28.305	28.354	-0.0089779	591	37	1.26753	0.021588564	1.2660105	258.8335		4.4084473	0.0072073	-0.00061949	-0.00075972	NaN	0	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3489.8	+		11769	12615	6829	6975							0.055769947286080424
KGGNGPSS	8	Unmodified	_KGGNGPSS_					0	0	0			REV__ENST00000373839.7_1_1:28733953-28786728:+|nuORF	REV__ENST00000373839.7_1_1:28733953-28786728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3369434604	1	703.336943	702.329667	-0.70548	-0.00049619	-3.6148	-0.0025424	-4.3203	-0.0030386	703.3353558845957	55.218	0.07217	55.217	55.169	55.242	-0.00061798	645	73	1.2351195	0.04324162	1.2336	252.2089	0	8.8298645						108	4	2	NaN	NaN	NaN	0.84887	1	3197	3197		0.32989	0.099748	1	11499	+		11770	11925	6830	6976	9335	9335					-0.033404653017214514
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.1195	0.00073816	-0.93944	-0.00061943	0.18007	0.00011873	659.3577215281882	30.56	0.14484	30.56	30.511	30.656	0	804	112	1.1393254	0.06701136	1.1393254	232.94493	0	13.701035						258	7	2	NaN	NaN	NaN	0.84727	1	2256	2256		1.2418	0	1	26227	+		11771	12096	6831	6977	9336	9336					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.8962	0.0012503	-1.0809	-0.00071272	0.81526	0.00053755	659.3566972328467	25.322	0.19304	25.322	25.202	25.395	0	795	139	1.1447623	0.083271265	1.1447623	234.05653	0	17.025528						796	9	3	NaN	NaN	NaN	0.84727	1	2261	2261		1.2418	0	1	129320	+		11772	12096	6831	6977	9337	9337					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.5573	0.0010268	-0.42273	-0.00027873	1.1346	0.00074809	659.3579738467996	28.725	0.1931	28.725	28.677	28.87	0	789	145	1.1483859	0.08697569	1.1483859	234.79741	0	17.782913						477	9	2	NaN	NaN	NaN	0.84727	1	2263	2263		1.2418	0	1	110610	+		11773	12096	6831	6977	9338	9338					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.2956	0.00085428	0.1425	9.3959E-05	1.4381	0.00094824	659.3569413117561	20.357	0.096176	20.357	20.309	20.405	0	786	100	1.1501974	0.059747696	1.1501974	235.16779	0	12.215927						133	5	3	NaN	NaN	NaN	0.84727	1	2264	2264		1.2418	0	1	8160.3	+		11774	12096	6831	6977	9339	9339					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	0.98589	0.00065005	-2.3925	-0.0015775	-1.4066	-0.00092748	659.3564934940367	20.839	0.19269	20.825	20.728	20.921	-0.014086	762	94	1.1646824	0.056120634	1.163163	238.12938	0	11.474319						312	9	2	NaN	NaN	NaN	0.84727	1	2162	2162		1.2418	0	1	21616	+		11775	12096	6831	6977	9340	9340					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.7342	0.0011435	-2.4919	-0.001643	-0.75768	-0.00049959	659.3565893567953	23.826	0.21704	23.813	23.765	23.982	-0.013048	792	151	1.1465741	0.09050262	1.1450547	234.427	0	18.504028						658	10	2	NaN	NaN	NaN	0.84727	1	2166	2166		1.2418	0	1	80623	+		11776	12096	6831	6977	9341	9341					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.4649	0.00096592	-2.0424	-0.0013467	-0.57749	-0.00038077	659.3568544211499	21.705	0.096304	21.691	21.619	21.715	-0.013897	774	127	1.1574414	0.07601392	1.1559219	236.64891	0	15.541702						245	5	2	NaN	NaN	NaN	0.84455	1	2169	2169		2.7852	1.5433	1	25722	+		11777	12096	6831	6977	9342	9342					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	1.4788	0.00097504	-1.6448	-0.0010845	-0.16598	-0.00010944	659.3569019666729	21.778	0.048107	21.764	21.764	21.812	-0.013895	774	109	1.1574414	0.065161824	1.1559219	236.64891	0	13.322876						139	3	2	NaN	NaN	NaN	0.84455	1	2173	2173		2.7852	1.5433	1	11471	+		11778	12096	6831	6977	9343	9343					0.0082296451765842
KGGRGGGA	8	Unmodified	_KGGRGGGA_					0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	2.1881	0.0014428	-2.0331	-0.0013406	0.155	0.0001022	659.3569144479196	25.298	0.50664	25.286	25.045	25.551	-0.012011	789	163	1.1483859	0.09775329	1.1468664	234.79741	0	19.986496						1291	22	2	NaN	NaN	NaN	0.84727	1	2176	2176		1.2418	0	1	227820	+		11779	12096	6831	6977	9344	9344					0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.8962	0.0012503	-1.0809	-0.00071272	0.81526	0.00053755	659.3566972328467	25.322	0.19304	25.322	25.202	25.395	0	795	139	1.1447623	0.083271265	1.1447623	234.05653		17.025528	0.01822	0.00042934	-0.0010521	NaN	1.2418	796	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129320	+		11780	12096	6831	6977							0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.5573	0.0010268	-0.42273	-0.00027873	1.1346	0.00074809	659.3579738467996	28.725	0.1931	28.725	28.677	28.87	0	789	145	1.1483859	0.08697569	1.1483859	234.79741		17.782913	0.0045524	0.00022489	-0.00014603	NaN	1.2418	477	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110610	+		11781	12096	6831	6977							0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.1195	0.00073816	-0.93944	-0.00061943	0.18007	0.00011873	659.3577215281882	30.56	0.14484	30.56	30.511	30.656	0	804	112	1.1393254	0.06701136	1.1393254	232.94493		13.701035	0.003385	-0.0002627	0.00075972	NaN	1.2418	258	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26227	+		11782	12096	6831	6977							0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.2956	0.00085428	0.1425	9.3959E-05	1.4381	0.00094824	659.3569413117561	20.357	0.096176	20.357	20.309	20.405	0	786	100	1.1501974	0.059747696	1.1501974	235.16779		12.215927	0	0	0	NaN	1.2418	133	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8160.3	+		11783	12096	6831	6977							0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	2.1881	0.0014428	-2.0331	-0.0013406	0.155	0.0001022	659.3569144479196	25.298	0.50664	25.286	25.045	25.551	-0.012011	789	163	1.1483859	0.09775329	1.1468664	234.79741		19.986496	-0.01822	-0.0001985	0.0010521	NaN	1.2418	1291	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227820	+		11784	12096	6831	6977							0.0082296451765842
KGGRGGGA	8	Unmodified						0	0	0			REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	REV__ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.0531	0.00069439	-0.1223	-8.0639E-05	0.93083	0.00061375	659.358306443138	30.559	0.096487	30.553	30.505	30.601	-0.0057564	804	115	1.1393254	0.06880391	1.1378059	232.94493		14.067566	-0.003385	0.00027609	-0.00075972	NaN	1.2418	197	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22295	+		11785	12096	6831	6977							0.0082296451765842
KGGRGGGS	8	Unmodified	_KGGRGGGS_					0	0	0			REV__ENST00000554224.5_1_14:100762018-100772718:-|nuORF	REV__ENST00000554224.5_1_14:100762018-100772718:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3532622266001	1	675.353262	674.345986	1.4621	0.00098742	-2.3519	-0.0015884	-0.88981	-0.00060094	675.3515311707637	19.66	0.16805	19.66	19.54	19.708	0	780	100	1.1538198	0.059702873	1.1538198	235.79456	0	12.200867						209	8	2	NaN	NaN	NaN	0.84756	1	2710	2710		1.072	0	1	16036	+		11786	12750	6832	6978	9345	9345					-0.00421339344950411
KGGRGGGS	8	Unmodified						0	0	0			REV__ENST00000554224.5_1_14:100762018-100772718:-|nuORF	REV__ENST00000554224.5_1_14:100762018-100772718:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.353262	674.345986	1.4621	0.00098742	-2.3519	-0.0015884	-0.88981	-0.00060094	675.3515311707637	19.66	0.16805	19.66	19.54	19.708	0	780	100	1.1538198	0.059702873	1.1538198	235.79456		12.200867	0	0	0	NaN	1.072	209	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16036	+		11787	12750	6832	6978							-0.00421339344950411
KGGVGGAG	8	Unmodified	_KGGVGGAG_					0	0	0		ENST00000515056.5_1_5:139938172-139941333:-|nuORF;ENST00000509914.5_1_5:139938172-139941496:-|nuORF;nc|ENSG00000113108|O95704-2|APBB3;ENSG00000113108|ENST00000357560|APBB3;nc|ENSG00000113108|O95704-3|APBB3;nc|ENSG00000113108|O95704-4|APBB3	ENST00000515056.5_1_5:139938172-139941333:-|nuORF	ENST00000515056.5_1_5:139938172-139941333:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3256504926001	1	602.32565	601.318374	1.3965	0.00084116	-4.3919	-0.0026454	-2.9954	-0.0018042	602.3233548867739	55.028	0.14431	55.028	55.004	55.148	0	708	58	1.1972283	0.034322858	1.1972283	245.25555	0	7.031128						110	7	2	NaN	NaN	NaN	0.84692	1	638	638		1.4396	0	1	10324			11788	1900	6833	6979	9346	9346					0.001767573948086465
KGGVGGAG	8	Unmodified						0	0	0		ENST00000515056.5_1_5:139938172-139941333:-|nuORF;ENST00000509914.5_1_5:139938172-139941496:-|nuORF;nc|ENSG00000113108|O95704-2|APBB3;ENSG00000113108|ENST00000357560|APBB3;nc|ENSG00000113108|O95704-3|APBB3;nc|ENSG00000113108|O95704-4|APBB3	ENST00000515056.5_1_5:139938172-139941333:-|nuORF	ENST00000515056.5_1_5:139938172-139941333:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	602.32565	601.318374	-0.6769	-0.00040771	-4.1812	-0.0025185	-4.8581	-0.0029262	602.3224796169801	55.05	0.12	55.049	55.001	55.121	-0.0006218	702	52	1.2008407	0.030709863	1.1993213	245.99554		6.2910156	0.010779	6.2186E-05	0.0010465	NaN	1.4396	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9168.9			11789	1900	6833	6979							0.001767573948086465
KGGVSSGP	8	Unmodified	_KGGVSSGP_					0	0	0			REV__ENST00000525308.1_1_8:145138262-145138586:+|nuORF	REV__ENST00000525308.1_1_8:145138262-145138586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3624299294002	1	688.36243	687.355153	2.2963	0.0015807	5.0242	0.0034585	7.3205	0.0050392	688.3664958594198	23.152	0.096458	23.152	23.103	23.2	0	666	58	1.2224985	0.034267783	1.2224985	249.73567	0	7.0003204						84	5	2	NaN	NaN	NaN	0.82797	1	2981	2981		5.4659	0	1	7203.9	+		11790	12618	6834	6980	9347	9347					-0.0010299077927129474
KGGYAAALC	9	Unmodified	_KGGYAAALC_					0	0	0			REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__nc|ENSG00000172216|P17676-2|CEBPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	853.4236499776998	1	853.42365	852.416374	1.006	0.00085853	-2.3316	-0.0019899	-1.3256	-0.0011313	853.4216467418041	22.308	0.12046	22.294	22.246	22.366	-0.013731	1236	67	0.876284	0.040490866	0.8747646	178.33173	0	8.24025						156	6	2	NaN	NaN	NaN	0.6907	1	5282	5282		0	0	1	15132	+		11791	10651	6835	6981	9348	9348					-0.015738020715275525
KGGYAAALC	9	Unmodified						0	0	0			REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__nc|ENSG00000172216|P17676-2|CEBPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	853.42365	852.416374	1.8631	0.00159	-4.9136	-0.0041934	-3.0505	-0.0026034	853.4194945467331	22.26	0.12058	22.26	22.236	22.356	0	1236	64	0.876284	0.03865248	0.876284	178.33173		7.8661346	-0.017067	-0.00097294	0.00075972	NaN	0	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15486	+		11792	10651	6835	6981							-0.015738020715275525
KGGYAAALC	9	Unmodified						0	0	0			REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__nc|ENSG00000172216|P17676-2|CEBPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	853.42365	852.416374	1.006	0.00085853	-2.3316	-0.0019899	-1.3256	-0.0011313	853.4216467418041	22.308	0.12046	22.294	22.246	22.366	-0.013731	1236	67	0.876284	0.040490866	0.8747646	178.33173		8.24025	0.017067	0.0012306	-0.00075972	NaN	0	156	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15132	+		11793	10651	6835	6981							-0.015738020715275525
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4052977971002	1	737.405298	736.398021	1.5872	0.0011704	0.99341	0.00073255	2.5806	0.0019029	737.406437787605	25.178	0.07238	25.178	25.153	25.226	0	561	79	1.2855089	0.04675007	1.2855089	262.2659	0	9.537827						92	4	2	NaN	NaN	NaN	0.84945	1	3860	3860		0	0	1	8192.6	+		11794	10911	6836	6982	9349	9349					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4052977971002	1	737.405298	736.398021	1.5867	0.00117	1.5866	0.00117	3.1733	0.00234	737.4062015514697	55.1	0.24069	55.1	55.028	55.268	0	726	58	1.1863867	0.034341216	1.1863867	242.04329	0	7.006195						218	11	2	NaN	NaN	NaN	0.84945	1	3861	3861		0	0	1	31418	+		11795	10911	6836	6982	9350	9350					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4052977971002	1	737.405298	736.398021	1.8369	0.0013546	1.812	0.0013361	3.6489	0.0026907	737.4069228982844	50.439	0.40726	50.439	50.295	50.702	0	678	67	1.2152823	0.03970611	1.2152823	247.9385	0	8.100723						723	18	4	NaN	NaN	NaN	0.84945	1	3862	3862		0	0	1	153320	+		11796	10911	6836	6982	9351	9351					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4052977971002	1	737.405298	736.398021	1.4329	0.0010566	6.1215	0.004514	7.5544	0.0055706	737.407900176024	28.653	0.14478	28.653	28.581	28.725	0	549	106	1.292695	0.062848926	1.292695	263.732	0	12.822266						209	7	2	NaN	NaN	NaN	0.84945	1	3863	3863		0	0	1	22627	+		11797	10911	6836	6982	9352	9352					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4052977971002	1	737.405298	736.398021	-0.28406	-0.00020947	3.3724	0.0024869	3.0884	0.0022774	737.4079182499692	55.146	0.24035	55.145	55.073	55.314	-0.00061798	726	40	1.1863867	0.023496628	1.1848673	242.04327	0	4.7937164						216	11	3	NaN	NaN	NaN	0.84945	1	3784	3784		0	0	1	19665	+		11798	10911	6836	6982	9353	9353					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4052977971002	1	737.405298	736.398021	-0.25266	-0.00018631	3.4174	0.00252	3.1647	0.0023337	737.408508591826	53.384	0.14379	53.384	53.336	53.48	-0.00053406	696	46	1.2044523	0.027085304	1.2029328	245.72897	0	5.525879						145	7	3	NaN	NaN	NaN	0.84945	1	3785	3785		0	0	1	14188	+		11799	10911	6836	6982	9354	9354					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4052977971002	1	737.405298	736.398021	-0.030591	-2.2558E-05	4.3707	0.0032229	4.3401	0.0032004	737.4085315628406	50.461	0.50309	50.462	50.319	50.822	0.0011024	675	61	1.2170867	0.036088824	1.2155672	248.30661	0	7.3627167						509	22	2	NaN	NaN	NaN	0.84945	1	3787	3787		0	0	1	143500	+		11800	10911	6836	6982	9355	9355					0.01927824068809514
KGHGKGPG	8	Unmodified	_KGHGKGPG_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4052977971002	1	737.405298	736.398021	1.2578	0.00092753	7.1031	0.0052378	8.3609	0.0061654	737.4090396585352	28.676	0.1689	28.668	28.572	28.74	-0.0083504	549	106	1.292695	0.06284225	1.2911756	263.732	0	12.820892						245	8	2	NaN	NaN	NaN	0.84876	1	3788	3788		0.39566	0.39566	1	26040	+		11801	10911	6836	6982	9356	9356					0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.405298	736.398021	1.5867	0.00117	1.5866	0.00117	3.1733	0.00234	737.4062015514697	55.1	0.24069	55.1	55.028	55.268	0	726	58	1.1863867	0.034341216	1.1863867	242.04329		7.006195	-0.02278	-0.00050129	0.00075972	NaN	0	218	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31418	+		11802	10911	6836	6982							0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.405298	736.398021	1.8369	0.0013546	1.812	0.0013361	3.6489	0.0026907	737.4069228982844	50.439	0.40726	50.439	50.295	50.702	0	678	67	1.2152823	0.03970611	1.2152823	247.9385		8.100723	-0.011782	-0.0011301	-0.00014245	NaN	0	723	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153320	+		11803	10911	6836	6982							0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.405298	736.398021	1.4329	0.0010566	6.1215	0.004514	7.5544	0.0055706	737.407900176024	28.653	0.14478	28.653	28.581	28.725	0	549	106	1.292695	0.062848926	1.292695	263.732		12.822266	-0.0075011	-0.00041166	0.00075972	NaN	0.39566	209	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22627	+		11804	10911	6836	6982							0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.405298	736.398021	-0.28406	-0.00020947	3.3724	0.0024869	3.0884	0.0022774	737.4079182499692	55.146	0.24035	55.145	55.073	55.314	-0.00061798	726	40	1.1863867	0.023496628	1.1848673	242.04327		4.7937164	0.02278	0.00081558	-0.00075972	NaN	0	216	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19665	+		11805	10911	6836	6982							0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.405298	736.398021	-0.030591	-2.2558E-05	4.3707	0.0032229	4.3401	0.0032004	737.4085315628406	50.461	0.50309	50.462	50.319	50.822	0.0011024	675	61	1.2170867	0.036088824	1.2155672	248.30661		7.3627167	0.011782	0.00075671	0.00014245	NaN	0	509	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143500	+		11806	10911	6836	6982							0.01927824068809514
KGHGKGPG	8	Unmodified						0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.405298	736.398021	1.2578	0.00092753	7.1031	0.0052378	8.3609	0.0061654	737.4090396585352	28.676	0.1689	28.668	28.572	28.74	-0.0083504	549	106	1.292695	0.06284225	1.2911756	263.732		12.820892	0.0075011	0.00031219	-0.00075972	NaN	0.39566	245	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26040	+		11807	10911	6836	6982							0.01927824068809514
KGKGAGGS	8	Unmodified	_KGKGAGGS_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;FMN2|p.R94C|1|0.33|ENSG00000155816|chr1:240092389-240092389|C/T|missense_variant	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3627642804001	1	661.362764	660.355488	1.2251	0.00081024	-0.88521	-0.00058545	0.33989	0.00022479	661.3626373330676	33.913	0.31376	33.911	33.863	34.177	-0.0012474	795	79	1.1447623	0.04709649	1.1432428	234.04208	0	9.628708						371	14	2	NaN	NaN	NaN	0.84887	1	2229	2229		0.32989	0	1	69324			11808	3888	6837	6983	9357	9357					0.011724289405719901
KGKGAVGA	8	Unmodified	_KGKGAVGA_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.4147998509001	1	687.4148	686.407523	1.4326	0.00098476	-5.3949	-0.0037085	-3.9623	-0.0027238	687.4112302480786	30.922	0.16891	30.922	30.825	30.994	0	618	118	1.2513325	0.07028651	1.2513325	255.6329	0	14.358719						358	8	2	NaN	NaN	NaN	0.84692	1	2961	2961		1.4396	0	1	53604			11809	1196	6838	6984	9358	9358					0.05177592354323224
KGKGAVGA	8	Unmodified						0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	687.4148	686.407523	1.386	0.00095273	-5.4469	-0.0037443	-4.0609	-0.0027916	687.4101449804881	30.92	0.28964	30.915	30.771	31.06	-0.0050716	624	142	1.247731	0.0847224	1.2462115	254.89714		17.30783	-0.0030598	-1.7829E-05	-0.0025605	NaN	1.4396	717	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110670			11810	1196	6838	6984							0.05177592354323224
KGKGGAGA	8	Unmodified	_KGKGGAGA_					0	0	0		ENST00000565890.1_1_16:89724274-89724517:+|nuORF	ENST00000565890.1_1_16:89724274-89724517:+|nuORF	ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3678496583	1	645.36785	644.360573	1.5971	0.0010307	-9.3176	-0.0060132	-7.7204	-0.0049825	645.3625184184768	39.837	0.096462	39.843	39.819	39.915	0.0060463	1203	106	0.8965218	0.0643999	0.89500237	183.38261	0	13.172943						236	5	2	NaN	NaN	NaN	0.84727	1	1777	1777		1.2418	0	1	39842			11811	7622	6839	6985	9359	9359					0.02416732803180821
KGKGGAGA	8	Unmodified	_KGKGGAGA_					0	0	0		ENST00000565890.1_1_16:89724274-89724517:+|nuORF	ENST00000565890.1_1_16:89724274-89724517:+|nuORF	ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3678496583	1	645.36785	644.360573	0.067789	4.3749E-05	-6.0968	-0.0039347	-6.029	-0.0038909	645.3638001952237	49.719	0.16774	49.72	49.673	49.84	0.0017853	621	88	1.2495319	0.05220294	1.2480124	255.59044	0	10.67804						172	8	2	NaN	NaN	NaN	0.84945	1	1778	1778		0	0	1	12403			11812	7622	6839	6985	9360	9360					0.02416732803180821
KGKGGGPG	8	Unmodified	_KGKGGGPG_					0	0	0			REV__ENST00000260818.10_1_3:132136474-132136507:+|nuORF	REV__ENST00000260818.10_1_3:132136474-132136507:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3678496583	1	657.36785	656.360573	0.66075	0.00043436	-0.68323	-0.00044914	-0.022481	-1.4779E-05	657.367576080274	58.027	0.023972	58.026	58.026	58.05	-0.00050735	783	37	1.1520087	0.02173686	1.1504892	235.55266	0	4.444565						30	2	2	NaN	NaN	NaN	0.84945	1	2119	2119		0	0	1	2038.7	+		11813	11540	6840	6986	9361	9361					0.01864732803176139
KGKGKAKA	8	Unmodified	_KGKGKAKA_					0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.5148482464999	1	787.514848	786.507572	1.8749	0.0014765	-5.867	-0.0046204	-3.9921	-0.0031439	787.5101604123405	55.604	0.14417	55.604	55.532	55.677	0	294	49	1.4446791	0.028482556	1.4446791	294.39606	0	5.8041687						175	7	2	NaN	NaN	NaN	0.84945	1	4587	4587		0	0	1	13636	+		11814	12175	6841	6987	9362	9362					0.10577829688111251
KGKGKAKA	8	Unmodified	_KGKGKAKA_					0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.5148482464999	1	787.514848	786.507572	-0.01608	-1.2663E-05	-3.678	-0.0028965	-3.6941	-0.0029092	787.5119352752874	55.891	0.14403	55.89	55.842	55.986	-0.00059128	288	49	1.4482387	0.028476596	1.4467193	295.1214	0	5.802948						103	7	2	NaN	NaN	NaN	0.84945	1	4497	4497		0	0	1	7671.1	+		11815	12175	6841	6987	9363	9363					0.10577829688111251
KGKGKAKA	8	Unmodified						0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	787.514848	786.507572	1.8749	0.0014765	-5.867	-0.0046204	-3.9921	-0.0031439	787.5101604123405	55.604	0.14417	55.604	55.532	55.677	0	294	49	1.4446791	0.028482556	1.4446791	294.39606		5.8041687	-0.14287	-0.00045097	-0.0010201	NaN	0	175	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13636	+		11816	12175	6841	6987							0.10577829688111251
KGKGKAKA	8	Unmodified						0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	787.514848	786.507572	-0.01608	-1.2663E-05	-3.678	-0.0028965	-3.6941	-0.0029092	787.5119352752874	55.891	0.14403	55.89	55.842	55.986	-0.00059128	288	49	1.4482387	0.028476596	1.4467193	295.1214		5.802948	0.14287	0.0012729	0.0010201	NaN	0	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7671.1	+		11817	12175	6841	6987							0.10577829688111251
KGKGKGAA	8	Unmodified	_KGKGKGAA_					0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.4413489524	1	716.441349	715.434072	1.4398	0.0010315	-5.8566	-0.0041959	-4.4168	-0.0031644	716.4369157579417	58.341	0.023998	58.341	58.341	58.365	0	636	40	1.2405256	0.023421288	1.2405256	253.22406	0	4.7809143						46	2	2	NaN	NaN	NaN	0.84945	1	3528	3528		0	0	1	4551.2	+		11818	9967	6842	6988	9364	9364					0.06497281245640352
KGKGKGAA	8	Unmodified	_KGKGKGAA_					0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.4413489524	1	716.441349	715.434072	-0.55751	-0.00039942	-5.1148	-0.0036644	-5.6723	-0.0040639	716.4375892313786	58.458	0.14399	58.458	58.338	58.482	-0.00048065	621	61	1.2495319	0.036019325	1.2480124	255.06248	0	7.3525085						133	7	2	NaN	NaN	NaN	0.84945	1	3452	3452		0	0	1	13827	+		11819	9967	6842	6988	9365	9365					0.06497281245640352
KGKGKGAA	8	Unmodified						0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	716.441349	715.434072	1.4398	0.0010315	-5.8566	-0.0041959	-4.4168	-0.0031644	716.4369157579417	58.341	0.023998	58.341	58.341	58.365	0	636	40	1.2405256	0.023421288	1.2405256	253.22406		4.7809143	-0.058505	-0.00029939	-0.0037434	NaN	0	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4551.2	+		11820	9967	6842	6988							0.06497281245640352
KGKGKGAA	8	Unmodified						0	0	0			REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	REV__ENST00000517974.1_1_8:117671201-117768048:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	716.441349	715.434072	-0.55751	-0.00039942	-5.1148	-0.0036644	-5.6723	-0.0040639	716.4375892313786	58.458	0.14399	58.458	58.338	58.482	-0.00048065	621	61	1.2495319	0.036019325	1.2480124	255.06248		7.3525085	0.058505	0.00023211	0.0037434	NaN	0	133	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13827	+		11821	9967	6842	6988							0.06497281245640352
KGKGKKGA	8	Unmodified	_KGKGKKGA_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.4991981823	1	773.499198	772.491922	2.2994	0.0017786	-6.3749	-0.0049309	-4.0755	-0.0031524	773.4943464308017	53.626	0.048054	53.626	53.602	53.65	0	399	280	1.382264	0.16682136	1.382264	281.76477	0	34.00537						438	3	4	NaN	NaN	NaN	0.84945	1	4395	4395		0	0	1	450720			11822	13728	6843	6989	9366	9366					0.09657543171078942
KGKGKKGA	8	Unmodified	_KGKGKKGA_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.4991981823	1	773.499198	772.491922	2.6062	0.0020159	-6.609	-0.0051121	-4.0028	-0.0030961	773.4937691436796	53.803	0.43272	53.803	53.731	54.164	0	405	607	1.3786905	0.36415577	1.3786905	281.03632	0	74.230606						2613	19	3	NaN	NaN	NaN	0.84945	1	4396	4396		0	0	1	1936200			11823	13728	6843	6989	9367	9367					0.09657543171078942
KGKGKKGA	8	Unmodified	_KGKGKKGA_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.4991981823	1	773.499198	772.491922	0.2237	0.00017303	-4.4757	-0.003462	-4.252	-0.0032889	773.4956403686226	53.648	0.024025	53.647	53.623	53.647	-0.00059128	396	274	1.3840506	0.16319895	1.3825312	282.12894	0	33.266953						300	2	4	NaN	NaN	NaN	0.84945	1	4318	4318		0	0	1	282260			11824	13728	6843	6989	9368	9368					0.09657543171078942
KGKGKKGA	8	Unmodified	_KGKGKKGA_					0	0	0		tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	tr|U7SGD6|U7SGD6_FUSNULysMdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02265PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.4991981823	1	773.499198	772.491922	0.78592	0.00060791	-5.0375	-0.0038965	-4.2515	-0.0032886	773.4950152593517	53.778	0.49706	53.777	53.712	54.209	-0.00059128	396	586	1.3840506	0.35136664	1.3825312	282.12894	0	71.62363						2327	21	5	NaN	NaN	NaN	0.84945	1	4319	4319		0	0	1	1585600			11825	13728	6843	6989	9369	9369					0.09657543171078942
KGLAVPPP	8	Unmodified	_KGLAVPPP_					0	0	0			REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	778.4821511346	1	778.482151	777.474875	1.0817	0.00084207	-2.0637	-0.0016065	-0.98198	-0.00076445	778.48020697937	41.161	0.12018	41.161	41.113	41.233	0	555	46	1.2891023	0.026949644	1.2891023	262.745	0	5.492859						103	6	2	NaN	NaN	NaN	0.84651	1	4464	4464		1.6704	0	1	9819.5	+		11826	10083	6844	6990	9370	9370					0.07723622565276855
KGLAVPPP	8	Unmodified						0	0	0			REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	778.482151	777.474875	1.0817	0.00084207	-2.0637	-0.0016065	-0.98198	-0.00076445	778.48020697937	41.161	0.12018	41.161	41.113	41.233	0	555	46	1.2891023	0.026949644	1.2891023	262.745		5.492859	0.0091576	0.00074713	0.00075972	NaN	1.6704	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9819.5	+		11827	10083	6844	6990							0.07723622565276855
KGLAVPPP	8	Unmodified						0	0	0			REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	REV__ENST00000460261.5_1_1:52825135-52826759:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	778.482151	777.474875	1.275	0.00099259	-4.66	-0.0036278	-3.385	-0.0026352	778.477950449653	41.135	0.12037	41.143	41.07	41.191	0.0074921	555	46	1.2891023	0.026946783	1.2875829	262.745		5.492279	-0.0091576	-0.0012741	-0.00075972	NaN	1.6704	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7988.2	+		11828	10083	6844	6990							0.07723622565276855
KGLFALHG	8	Unmodified	_KGLFALHG_					0	0	0			REV__ENST00000429967.2_1_X:128780792-128781152:-|nuORF	REV__ENST00000429967.2_1_X:128780792-128781152:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.4882991450002	1	842.488299	841.481023	0.98977	0.00083387	8.2267	0.0069309	9.2165	0.0077648	842.4953410138592	26.77	0.16894	26.759	26.614	26.783	-0.010645	480	43	1.3339561	0.025087357	1.3324367	271.52808	0	5.106537						107	8	2	NaN	NaN	NaN	0.84651	1	5153	5153		1.6704	0	1	8562	+		11829	12149	6845	6991	9371	9371					0.05394140796806823
KGLHLYGT	8	Unmodified	_KGLHLYGT_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4937784534001	1	888.493778	887.486502	0.16932	0.00015044	1.8378	0.0016329	2.0071	0.0017833	888.4960244696965	56.779	0.16812	56.778	56.754	56.922	-0.00056458	321	211	1.4286518	0.124943614	1.4271324	290.56113	0	25.411194						654	8	5	NaN	NaN	NaN	0.84727	1	5790	5790		1.2418	0	1	317220			11830	5978	6846	6992	9372	9372					0.03825819588610102
KGLLGDIAIH	10	Unmodified	_KGLLGDIAIH_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.L3816F|1|0.3|ENSG00000164199|chr5:90755053-90755053|G/C|missense_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8111163441	2	518.811116	1035.60768	1.3556	0.00070331	-3.9088	-0.0020279	-2.5531	-0.0013246	519.3105527026864	37.6	0.12045	37.603	37.53	37.651	0.0028267	1215	37	0.8891654	0.022073984	0.88764596	360.88403	0	8.959137						82	6	2	NaN	NaN	NaN	0.72631	1	9827	9827		6.2502	0	1	6590.7			11831	4306	6847	6993	9373	9373					0.09130022231261137
KGLPFILI	8	Unmodified	_KGLPFILI_					0	0	0		nc|ENSG00000135119|Q96EX2-2|RNFT2;nc|ENSG00000135119|Q96EX2-3|RNFT2;ENST00000547718.5_1_12:117186478-117290514:+|nuORF;nc|ENSG00000135119|Q96EX2-5|RNFT2;ENSG00000135119|ENST00000257575|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5917015840001	1	900.591702	899.584425	1.886	0.0016985	-10.617	-0.0095618	-8.7312	-0.0078632	900.5819591905986	53.266	0.072067	53.266	53.218	53.29	0	117	463	1.5493695	0.27403307	1.5493695	315.0482	0	55.72177						449	4	2	NaN	NaN	NaN	0.84876	1	6079	6079		0.39566	0	1	38217			11832	2922	6848	6994	9374	9374					0.13061628184607343
KGLPFILI	8	Unmodified	_KGLPFILI_					0	0	0		nc|ENSG00000135119|Q96EX2-2|RNFT2;nc|ENSG00000135119|Q96EX2-3|RNFT2;ENST00000547718.5_1_12:117186478-117290514:+|nuORF;nc|ENSG00000135119|Q96EX2-5|RNFT2;ENSG00000135119|ENST00000257575|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	nc|ENSG00000135119|Q96EX2-2|RNFT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5917015840001	1	900.591702	899.584425	2.0499	0.0018461	-10.558	-0.0095086	-8.5083	-0.0076625	900.5819843538235	53.242	0.072067	53.242	53.218	53.29	0	906	985	1.0775855	0.59304214	1.0775855	219.11581	0	120.58896						1247	4	2	NaN	NaN	NaN	0.84876	1	6080	6080		0.39566	0	1	111020			11833	2922	6848	6994	9375	9375					0.13061628184607343
KGLSMPGVP	9	Unmodified	_KGLSMPGVP_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.24676335055005	2	443.246763	884.478974	0.96092	0.00042592	6.7773	0.003004	7.7382	0.0034299	443.25011033002863	14.981	0.096101	14.981	14.933	15.029	0	1572	37	0.6688489	0.02235806	0.6688489	272.0721	0	9.094757						82	5	2	NaN	NaN	NaN	0.47587	1	5867	5867		10.605	1.643	1	8375.2			11834	2162	6849	6995	9376	9376					0.0321134399669063
KGMGSPGV	8	Unmodified	_KGMGSPGV_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3708861257	1	732.370886	731.36361	0.70431	0.00051581	-3.7609	-0.0027543	-3.0565	-0.0022385	732.3682262183964	33.238	0.12067	33.238	33.19	33.311	0	669	55	1.2206948	0.032476425	1.2206948	249.07408	0	6.6265717						133	6	2	NaN	NaN	NaN	0.84727	1	3768	3768		1.2418	0	1	11691	+		11835	11432	6850	6996	9377	9377					-0.012817601343158458
KGPESESEDH	10	Unmodified	_KGPESESEDH_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7359996078	2	557.736	1113.45745	1.446	0.0008065	-9.1025	-0.0050768	-7.6565	-0.0042703	557.730671498494	30.1	0.072374	30.094	30.07	30.142	-0.0064106	1263	40	0.85970795	0.023953617	0.8581885	348.608	0	9.713074						72	4	2	NaN	NaN	NaN	0.77594	1	13018	13018		1.5054	0.17424	1	4724.1			11836	6112	6851	6997	9378	9378					-0.09474414289002198
KGPGAGPA	8	Unmodified	_KGPGAGPA_					0	0	0		nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3569506209999	1	654.356951	653.349674	0.76611	0.00050131	-9.6154	-0.0062919	-8.8493	-0.0057906	654.3507407413889	31.839	0.19307	31.839	31.79	31.983	0	675	61	1.2170867	0.036088824	1.2170867	248.88269	0	7.3797913						215	9	3	NaN	NaN	NaN	0.84945	1	2152	2152		0	0	1	27600			11837	7943	6852	6998	9379	9379					0.009133304288866384
KGPGKKGG	8	Unmodified	_KGPGKKGG_					0	0	0			REV__ENST00000451615.1_1_21:46702815-46703436:-|nuORF	REV__ENST00000451615.1_1_21:46702815-46703436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.4413489524002	1	728.441349	727.434072	1.2619	0.00091926	0.89958	0.00065529	2.1615	0.0015745	728.442624126543	27.567	0.072409	27.567	27.543	27.615	0	630	40	1.2441287	0.023413777	1.2441287	253.8808	0	4.777893						76	4	2	NaN	NaN	NaN	0.84887	1	3732	3732		0.32989	0	1	7264.6	+		11838	11747	6853	6999	9380	9380					0.05945281245669776
KGPPGGKG	8	Unmodified	_KGPPGGKG_					0	0	0		ENST00000341807.8_1_8:139601498-139734429:-|nuORF;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3991497867	1	697.39915	696.391873	0.86847	0.00060567	-2.7855	-0.0019426	-1.9171	-0.001337	697.3971117858637	35.747	0.21706	35.747	35.675	35.892	0	699	85	1.2026466	0.05058372	1.2026466	245.61804	0	10.33078						319	10	4	NaN	NaN	NaN	0.84887	1	3170	3170		0.32989	0	1	55423			11839	4677	6854	7000	9381	9381					0.0315330583728155
KGQGGAGA	8	Unmodified	_KGQGGAGA_					0	0	0		ENST00000402367.5_1_19:54711128-54711440:+|nuORF;ENST00000495002.5_1_19:54710350-54711440:+|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000402367.5_1_19:54711128-54711440:+|nuORF	ENST00000402367.5_1_19:54711128-54711440:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.331464152	1	645.331464	644.324188	0.076243	4.9202E-05	-5.5257	-0.0035659	-5.4495	-0.0035167	645.328412728435	55.434	0.07206	55.434	55.409	55.482	-0.00061798	693	79	1.2062578	0.04695058	1.2047384	246.73906	0	9.603683						128	4	3	NaN	NaN	NaN	0.84876	1	1775	1775		0.39566	0	1	10931			11840	4752	6855	7001	9382	9382					-0.012201440935314167
KGQGKSSS	8	Unmodified	_KGQGKSSS_					0	0	0		ENST00000324309.8_1_4:24833126-24981729:-|nuORF;nc|ENSG00000181982|Q6ZUS6-2|CCDC149;nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	ENST00000324309.8_1_4:24833126-24981729:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4053573766	1	778.405357	777.398081	1.6705	0.0013003	-9.6039	-0.0074757	-7.9334	-0.0061754	778.3978145099527	27.687	0.072376	27.677	27.653	27.726	-0.009552	564	46	1.2837118	0.026955366	1.2821923	261.6468	0	5.494049						66	4	2	NaN	NaN	NaN	0.84455	1	4381	4381		2.7852	0	1	5164			11841	5243	6856	7002	9383	9383					0.0004777927814529903
KGQLNLIN	8	Unmodified	_KGQLNLIN_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.5308922412	1	899.530892	898.523616	1.2863	0.001157	-9.0695	-0.0081583	-7.7832	-0.0070012	899.5225196639412	37.338	0.072182	37.338	37.338	37.41	0	1272	28	0.854179	0.016588628	0.854179	173.69153	0	3.3731842						49	4	2	NaN	NaN	NaN	0.84727	1	6041	6041		1.2418	0	1	3120	+		11842	12188	6857	7003	9384	9384					0.07029491134369437
KGRGSAKA	8	Unmodified	_KGRGSAKA_					0	0	0		KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant;ENSG00000162522|ENST00000401073|KIAA1522	KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.4580616490999	1	774.458062	773.450785	2.1805	0.0016887	-3.7436	-0.0028993	-1.5632	-0.0012106	774.4550943782014	36.131	0.072308	36.132	36.132	36.205	0.0011024	489	37	1.3285799	0.021508098	1.3270605	270.81577	0	4.3841553						64	4	2	NaN	NaN	NaN	0.84455	1	4331	4331		2.7852	0	1	3784.9			11843	4143	6858	7004	9385	9385					0.05499782131596476
KGSAASQV	8	Unmodified	_KGSAASQV_					0	0	0			REV__ENST00000311413.4_1_11:119205294-119205741:+|nuORF	REV__ENST00000311413.4_1_11:119205294-119205741:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3995437172	1	747.399544	746.392267	2.7991	0.0020921	1.1133	0.00083206	3.9124	0.0029241	747.4000510828042	23.947	0.048265	23.934	23.91	23.958	-0.013048	966	37	1.0411623	0.021879792	1.0396428	212.36304	0	4.462738						35	3	2	NaN	NaN	NaN	0.82627	1	3918	3918		5.6942	0.2283	1	2351.5	+		11844	11689	6859	7005	9386	9386					0.008926807664693115
KGSAIDRK	8	Unmodified	_KGSAIDRK_					0	0	0		ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG	ENSG00000076248|ENST00000242576|UNG	ENSG00000076248|ENST00000242576|UNG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.5104911501	1	874.510491	873.503215	1.1447	0.001001	-10.109	-0.00884	-8.9639	-0.007839	874.5019913640651	33.14	0.072319	33.138	33.09	33.162	-0.0024757	360	46	1.405474	0.026763558	1.4039545	285.91708	0	5.4445496						68	4	2	NaN	NaN	NaN	0.84512	1	5585	5585		2.4615	0	1	4155.7			11845	853	6860	7006	9387	9387					0.061403204745602125
KGSGGSTS	8	Unmodified	_KGSGGSTS_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3209590452001	1	680.320959	679.313683	2.8362	0.0019295	5.5844	0.0037992	8.4205	0.0057287	680.3250020780769	17.81	0.071928	17.796	17.772	17.844	-0.013784	717	37	1.1918083	0.021683335	1.1902889	243.52245	0	4.4305573						38	4	2	NaN	NaN	NaN	0.84897	1	2746	2746		0.27539	0	1	2385	+		11846	10289	6861	7007	9388	9388					-0.03880171538605737
KGSGSGKG	8	Unmodified	_KGSGSGKG_					0	0	0		ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	ENSG00000133124|ENST00000372129|IRS4	ENSG00000133124|ENST00000372129|IRS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3576789025	1	677.357679	676.350402	1.4348	0.00097189	-5.735	-0.0038846	-4.3002	-0.0029128	677.3538363837642	19.18	0.16799	19.18	19.108	19.276	0	678	58	1.2152823	0.034289718	1.2152823	248.34042	0	7.0070496						186	8	2	NaN	NaN	NaN	0.84945	1	2762	2762		0	0	1	16439			11847	2813	6862	7008	9389	9389					-0.0007187492205957824
KGSKAAQL	8	Unmodified	_KGSKAAQL_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.7427024278999	2	401.742702	801.470852	0.066086	2.655E-05	-2.5195	-0.0010122	-2.4534	-0.00098564	401.7410620977607	55.194	0.07217	55.193	55.169	55.242	-0.0006218	1404	28	0.77288127	0.016667843	0.7713618	314.88718	0	6.790802						48	4	2	NaN	NaN	NaN	0.84756	1	4674	4674		1.072	0	1	3743.7	+		11848	8724	6863	7009	9390	9390					0.06217533071549042
KGTQLIDKF	9	Unmodified	_KGTQLIDKF_					0	0	0			REV__tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	REV__tr|U7SUZ7|U7SUZ7_FUSNUDUF4357domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01067PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3031241365001	2	525.303124	1048.5917	1.6344	0.00085854	3.1488	0.0016541	4.7832	0.0025126	525.3046520430456	26.191	0.193	26.18	26.156	26.349	-0.011137	1275	46	0.85233563	0.027650714	0.8508162	345.8798	0	11.220734						174	9	2	NaN	NaN	NaN	0.21199	1	10362	10362		24.562	1.4444	1	30075	+		11849	13528	6864	7010	9391	9391					0.06934315994362805
KGTTDVVL	8	Unmodified	_KGTTDVVL_					0	0	0			REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF	REV__ENST00000517448.5_1_5:154210261-154230090:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4774596872002	1	832.47746	831.470183	2.0974	0.0017461	-1.0766	-0.00089624	1.0208	0.00084982	832.4775421991744	23.875	0.072304	23.861	23.813	23.886	-0.013048	447	37	1.3536539	0.02147603	1.3521345	275.5909	0	4.372284						57	4	2	NaN	NaN	NaN	0.72013	1	5043	5043		17.799	0	1	3748	+		11850	10577	6865	7011	9392	9392					0.04770693631871836
KGVAAGAA	8	Unmodified	_KGVAAGAA_					0	0	0			REV__ENSG00000179922|ENST00000325351|ZNF784	REV__ENSG00000179922|ENST00000325351|ZNF784	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3726006851999	1	644.372601	643.365324	2.2803	0.0014694	-9.7209	-0.0062639	-7.4406	-0.0047945	644.3659761150659	20.405	0.096413	20.391	20.367	20.463	-0.014141	738	40	1.179155	0.023506641	1.1776356	241.2027	0	4.8084106						73	5	2	NaN	NaN	NaN	0.84887	1	1760	1760		0.32989	0	1	4969.3	+		11851	10816	6866	7012	9393	9393					0.029376169459396806
KGVGGGGS	8	Unmodified	_KGVGGGGS_					0	0	0			REV__ENST00000421367.6_1_10:101945527-101945656:-|nuORF	REV__ENST00000421367.6_1_10:101945527-101945656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3205651147	1	618.320565	617.313289	0.62968	0.00038935	-1.2148	-0.00075113	-0.58511	-0.00036178	618.3201368337798	29.183	0.072393	29.175	29.103	29.175	-0.0077209	1137	79	0.9369253	0.04767233	0.93540585	191.82137	0	9.760193						153	4	3	NaN	NaN	NaN	0.84727	1	1032	1032		1.2418	0	1	29437	+		11852	12111	6867	7013	9394	9394					-0.010675464678115532
KHEILNRNS	9	Unmodified	_KHEILNRNS_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.87199478519994	3	370.871995	1109.59415	1.4248	0.00052842	-4.4655	-0.0016561	-3.0406	-0.0011277	370.8703993862109	14.933	0.072086	14.933	14.909	14.981	0	1491	34	0.7190863	0.020438194	0.7190863	437.39346	0	12.431793						60	4	2	NaN	NaN	NaN	0.37272	1	13272	13272		14.854	7.7236	1	6277.3	+		11853	11002	6868	7014	9395	9395					0.04374164452019613
KHEQRQPVL	9	Unmodified	_KHEQRQPVL_					0	0	0			REV__ENST00000515359.6_1_3:49572599-49572641:+|nuORF	REV__ENST00000515359.6_1_3:49572599-49572641:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8225466976501	2	567.822547	1133.63054	2.3421	0.0013299	-11.846	-0.0067264	-9.5039	-0.0053965	568.3175789761533	54.644	0.024029	54.644	54.62	54.644	0	1236	25	0.876284	0.014727116	0.876284	355.2522	0	5.9704895						24	2	2	NaN	NaN	NaN	0.67312	1	14231	14231		1.5054	0.065836	1	1597.3	+		11854	12574	6869	7015	9396	9396					0.06907041348745224
KHEVNQYR	8	Unmodified	_KHEVNQYR_					0	0	0		DUSP22|p.H144N|1|0.12|ENSG00000112679|chr6:348269-348269|C/A|missense_variant	DUSP22|p.H144N|1|0.12|ENSG00000112679|chr6:348269-348269|C/A|missense_variant	DUSP22|p.H144N|1|0.12|ENSG00000112679|chr6:348269-348269|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2779720185	2	537.277972	1072.54139	1.7186	0.00092335	7.5227	0.0040418	9.2412	0.0049651	537.7841108617722	18.53	0.14392	18.516	18.492	18.636	-0.01395	1278	34	0.85049206	0.020281553	0.8489726	345.03174	0	8.227936						97	7	3	NaN	NaN	NaN	0.78967	1	11365	11365		10.605	0.85897	1	11746			11855	274	6870	7016	9397	9397					0.008022063892212827
KHFYFITS	8	Unmodified	_KHFYFITS_					0	0	0		ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENST00000452150.6_1_6:131179278-131188835:-|nuORF	ENST00000452150.6_1_6:131179278-131188835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5356432680999	1	1042.53564	1041.52837	1.8894	0.0019698	-7.0335	-0.0073327	-5.1441	-0.0053629	1042.5281487170168	23.586	0.07226	23.586	23.562	23.634	0	234	40	1.4802408	0.023091793	1.4802408	300.37283	0	4.6858215						70	4	2	NaN	NaN	NaN	0.8439	1	10272	10272		3.1533	0.36816	1	5379.3			11856	7043	6871	7017	9398	9398					0.00926375277117586
KHGGGGGG	8	Unmodified	_KHGGGGGG_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3004983746001	1	626.300498	625.293222	0.44584	0.00027923	-5.9226	-0.0037093	-5.4767	-0.0034301	626.2963887392082	33.768	0.096554	33.766	33.718	33.814	-0.0018463	1119	64	0.9479278	0.038506687	0.94640833	194.02039	0	7.881485						112	5	2	NaN	NaN	NaN	0.84692	1	1182	1182		1.4396	0	1	13073			11857	5119	6872	7018	9399	9399					-0.03441297407755428
KHGKGGGG	8	Unmodified	_KHGKGGGG_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3739976687002	1	697.373998	696.366721	1.5391	0.0010733	4.9791	0.0034723	6.5182	0.0045456	697.3768925351434	11.716	0.21604	11.716	11.644	11.86	0	1482	49	0.72465914	0.029723525	0.72465914	147.99814	0	6.0704803						150	10	2	NaN	NaN	NaN	0.84945	1	3168	3168		0	0	1	10538			11858	3888	6873	7019	9400	9400					0.006392510347268399
KHHIFIAK	8	Unmodified	_KHHIFIAK_					0	0	0			REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.5992465779001	1	993.599247	992.59197	2.1071	0.0020936	-0.80761	-0.00080244	1.2995	0.0012912	993.5973289866756	53.218	0.096123	53.218	53.218	53.314	0	132	49	1.5405227	0.028313756	1.5405227	312.80667	0	5.7492065						74	5	2	NaN	NaN	NaN	0.8439	1	8329	8329		3.1533	0.97701	1	6067.7	+		11859	12562	6874	7020	9401	9401					0.0953778050488836
KHHIFIAK	8	Unmodified						0	0	0			REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	993.599247	992.59197	2.1071	0.0020936	-0.80761	-0.00080244	1.2995	0.0012912	993.5973289866756	53.218	0.096123	53.218	53.218	53.314	0	132	49	1.5405227	0.028313756	1.5405227	312.80667		5.7492065	-0.010962	-0.00076668	-0.0018946	NaN	3.1533	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6067.7	+		11860	12562	6874	7020							0.0953778050488836
KHHIFIAK	8	Unmodified						0	0	0			REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	REV__ENST00000512116.5_1_4:123814196-123814256:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	993.599247	992.59197	0.71905	0.00071445	0.80598	0.00080083	1.525	0.0015153	993.6000380879273	53.24	0.071918	53.24	53.216	53.288	-0.00053787	123	49	1.5458313	0.028307796	1.5443119	313.88458		5.747986	0.010962	0.00083658	0.0018946	NaN	3.1533	44	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2762.1	+		11861	12562	6874	7020							0.0953778050488836
KHILGLLS	8	Unmodified	_KHILGLLS_					0	0	0			REV__ENSG00000204010|ENST00000371809|IFIT1B	REV__ENSG00000204010|ENST00000371809|IFIT1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.5614640881003	1	880.561464	879.554188	0.89688	0.00078976	6.8295	0.0060138	7.7264	0.0068035	880.5673718773245	41.063	0.19239	41.07	40.974	41.167	0.0074959	378	73	1.3947657	0.04285586	1.3932463	283.70834	0	8.717285						250	9	2	NaN	NaN	NaN	0.84887	1	5677	5677		0.32989	0	1	38482	+		11862	11220	6875	7021	9402	9402					0.10959269519435111
KHKEFQKTL	9	Unmodified	_KHKEFQKTL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.8351227566501	2	579.835123	1157.65569	1.8632	0.0010804	-11.641	-0.0067501	-9.7782	-0.0056697	579.8279634239086	15.894	0.095866	15.894	15.87	15.966	0	1197	31	0.9001988	0.018383086	0.9001988	364.8564	0	7.450775						69	5	2	NaN	NaN	NaN	0.54912	1	15077	15077		7.5876	1.8934	1	6578.6			11863	2542	6876	7022	9403	9403					0.08317096151336045
KHKEFQKTL	9	Unmodified						0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	579.835123	1157.65569	2.8318	0.001642	-12.091	-0.0070108	-9.2592	-0.0053688	579.8273621118245	16.059	0.071869	16.047	16.023	16.094	-0.012611	1200	25	0.89836043	0.014706433	0.896841	364.1113		5.9606323	0.076247	-0.00031291	-0.0016789	NaN	7.5876	46	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3249.1			11864	2542	6876	7022							0.08317096151336045
KHLASHILA	9	Unmodified	_KHLASHILA_					0	0	0			REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.5890758221001	1	989.589076	988.581799	0.43683	0.00043228	-5.6214	-0.0055629	-5.1846	-0.0051306	989.583559962249	54.546	0.0723	54.545	54.497	54.569	-0.00061798	162	40	1.5228153	0.023030639	1.5212959	309.22833	0	4.676697						56	4	2	NaN	NaN	NaN	0.66529	1	8005	8005		2.1763	0.93449	1	3857.1	+		11865	8296	6877	7023	9404	9404					0.08705172779650638
KHLASHILA	9	Unmodified						0	0	0			REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	989.589076	988.581799	2.2088	0.0021858	-1.5899	-0.0015734	0.6189	0.00061245	989.5874501087125	54.524	0.096409	54.524	54.5	54.596	0	168	49	1.5192716	0.028343797	1.5192716	308.50873		5.755615	-0.010709	0.0019341	-0.0010121	NaN	2.1763	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4688.2	+		11866	8296	6877	7023							0.08705172779650638
KHLASHILA	9	Unmodified						0	0	0			REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	REV__ENST00000494191.6_1_1:17265409-17270768:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	989.589076	988.581799	0.43683	0.00043228	-5.6214	-0.0055629	-5.1846	-0.0051306	989.583559962249	54.546	0.0723	54.545	54.497	54.569	-0.00061798	162	40	1.5228153	0.023030639	1.5212959	309.22833		4.676697	0.010709	-0.0020554	0.0010121	NaN	2.1763	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3857.1	+		11867	8296	6877	7023							0.08705172779650638
KHLVMEAMI	9	Unmodified	_KHLVMEAMI_					0	0	0			REV__nc|ENSG00000050748|P45984-3|MAPK9	REV__nc|ENSG00000050748|P45984-3|MAPK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5689340064	1	1071.56893	1070.56166	0.89786	0.00096212	2.9797	0.0031929	3.8775	0.0041551	1071.5708131056972	34.033	0.19309	34.032	33.96	34.153	-0.0012474	129	115	1.5422925	0.06718135	1.540773	312.85342	0	13.627716						328	9	3	NaN	NaN	NaN	0.20577	1	11293	11293		24.961	0	1	38678	+		11868	13084	6878	7024	9405	9405					0.029199177331747705
KHLYVVQN	8	Unmodified	_KHLYVVQN_					0	0	0			REV__HFM1|p.D1035E|1|0.16|ENSG00000162669|chr1:91315850-91315850|G/T|missense_variant	REV__HFM1|p.D1035E|1|0.16|ENSG00000162669|chr1:91315850-91315850|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.1906647586334	3	334.190665	999.550165	1.6382	0.00054745	1.3548	0.00045274	2.9929	0.0010002	334.19116500093804	14.62	0.11975	14.609	14.561	14.68	-0.011218	1479	43	0.72651637	0.025999546	0.7249969	442.50812	0	15.835876						93	6	2	NaN	NaN	NaN	0.82797	1	8401	8401		3.5698	0	1	8495.3	+		11869	10247	6879	7025	9406	9406					0.050371800257153154
KHPLLPQRTY	10	Unmodified	_KHPLLPQRTY_					0	0	0			REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.8616718581501	2	626.861672	1251.70879	1.7084	0.0010709	-11.561	-0.0072469	-9.8521	-0.0061759	626.8541198978858	22.139	0.072422	22.139	22.115	22.187	0	1113	31	0.9515937	0.018327594	0.9515937	385.34573	0	7.4217224						75	4	3	NaN	NaN	NaN	0.77251	1	17824	17824		2.3381	0.23557	1	6595.1	+		11870	9678	6880	7026	9407	9407					0.09300473933990361
KHPLLPQRTY	10	Unmodified						0	0	0			REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.861672	1251.70879	1.7084	0.0010709	-11.561	-0.0072469	-9.8521	-0.0061759	626.8541198978858	22.139	0.072422	22.139	22.115	22.187	0	1113	31	0.9515937	0.018327594	0.9515937	385.34573		7.4217224	-0.065305	1.6942E-05	0.0016761	NaN	2.3381	75	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6595.1	+		11871	9678	6880	7026							0.09300473933990361
KHPLLPQRTY	10	Unmodified						0	0	0			REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.861672	1251.70879	1.1066	0.00069371	-11.61	-0.0072777	-10.503	-0.006584	626.8556521285703	22.284	0.12049	22.27	22.222	22.342	-0.013731	1116	25	0.94976085	0.014663696	0.9482414	384.60352		5.938019	0.065305	-4.4761E-05	-0.0016761	NaN	2.3381	106	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7217.7	+		11872	9678	6880	7026							0.09300473933990361
KHPWCRESVL	10	Unmodified	_KHPWCRESVL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|10	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.8852468934333	3	418.885247	1253.63391	1.5412	0.00064557	-1.7525	-0.00073409	-0.21132	-8.8517E-05	418.88462220578765	15.438	0.0721	15.438	15.438	15.51	0	1440	58	0.7506418	0.035248756	0.7506418	455.9444	0	21.41034						110	4	2	NaN	NaN	NaN	0.76548	1	17876	17876		1.5256	0.42352	1	11019	+		11873	8237	6881	7027	9408	9408					0.017239681310911692
KHQRQEILRNC	11	Unmodified	_KHQRQEILRNC_					0	0	0		ENST00000535939.5_2_12:10746401-10750756:-|nuORF	ENST00000535939.5_2_12:10746401-10750756:-|nuORF	ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	356.94393887345007	4	356.943939	1423.74665	2.2655	0.00080865	-1.0959	-0.00039118	1.1696	0.00041748	356.9429380291067	23.031	0.07213	23.031	22.983	23.055	0	1488	25	0.7209441	0.014861703	0.7209441	583.11096	0	12.020386						39	4	2	NaN	NaN	NaN	0.76488	1	20244	20244		0.9877	0.10307	1	2484.1			11874	7469	6882	7028	9409	9409					0.05172616857180401
KHRDMLKLLE	10	Unmodified	_KHRDMLKLLE_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8686396105	2	641.86864	1281.72273	1.3247	0.00085026	-9.7881	-0.0062827	-8.4635	-0.0054324	642.3633236440782	42.6	0.096012	42.61	42.586	42.682	0.0097351	1230	49	0.8799654	0.02945429	0.878446	356.24896	0	11.924377						156	5	3	NaN	NaN	NaN	0.73444	1	17635	17635		5.6942	0.96509	1	8422.5	+		11875	10227	6883	7029	9410	9410					0.09313383370772499
KHRDMLKLLE	10	Unmodified	_KHRDMLKLLE_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8686396105	2	641.86864	1281.72273	1.5977	0.0010255	-9.5011	-0.0060984	-7.9034	-0.0050729	642.363410199036	42.528	0.024002	42.538	42.538	42.562	0.0097351	1233	55	0.87812483	0.033132493	0.8766054	355.50378	0	13.413483						59	2	2	NaN	NaN	NaN	0.73444	1	17636	17636		5.6942	0.96509	1	4800	+		11876	10227	6883	7029	9411	9411					0.09313383370772499
KHRDMLKLLE	10	Unmodified	_KHRDMLKLLE_					0	0	0			REV__nc|ENSG00000162086|Q96N20|ZNF75A	REV__nc|ENSG00000162086|Q96N20|ZNF75A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8686396105	2	641.86864	1281.72273	3.2413	0.0020805	-9.2165	-0.0059158	-5.9752	-0.0038353	642.3636333720632	39.668	1.0827	39.673	39.649	40.732	0.0053368	1221	133	0.885486	0.08094674	0.88396657	358.48392	0	32.770844						1903	46	2	NaN	NaN	NaN	0.68669	1	17637	17637		8.962	3.7731	1	7809300	+		11877	10227	6883	7029	9412	9412					0.09313383370772499
KHRWPTGDNI	10	Unmodified	_KHRWPTGDNI_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.G216Wfs*5|1|0.23|ENSG00000134644|chr1:31005909-31005927|CCATGCTAACGCCTAGTCC/-|frameshift_variant;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1223.6279805239	1	1223.62798	1222.6207	1.2364	0.0015129	-8.2766	-0.010127	-7.0401	-0.0086145	1223.617539154009	35.167	0.16899	35.167	35.143	35.312	-4.5776E-05	57	73	1.5847093	0.04238987	1.5831898	320.94846	0	8.585144						178	8	2	NaN	NaN	NaN	0.58645	1	16350	16350		15.822	1.3969	1	15105			11878	2884	6884	7030	9413	9413					0.018298533433835473
KHSGGGGGG	9	Unmodified	_KHSGGGGGG_					0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.1699016255501	2	357.169902	712.32525	1.7837	0.00063707	5.0906	0.0018182	6.8742	0.0024553	357.1715481805884	53.803	0.12057	53.803	53.731	53.852	0	1467	28	0.7339432	0.01670587	0.7339432	299.65094	0	6.820587						71	6	2	NaN	NaN	NaN	0.66822	1	3466	3466		1.9246	0.25428	1	4695.6			11879	4417	6885	7031	9414	9414					-0.04241929724594229
KHTEVEIQP	9	Unmodified	_KHTEVEIQP_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7878382130501	2	540.787838	1079.56112	1.7352	0.00093835	-7.7062	-0.0041674	-5.9711	-0.0032291	540.7838705332982	22.356	0.096457	22.356	22.332	22.429	0	1251	67	0.8670771	0.040530264	0.8670771	351.73108	0	16.441162						124	5	2	NaN	NaN	NaN	0.12866	1	11962	11962		31.675	9.9044	1	25184	+		11880	11131	6886	7032	9415	9415					0.024525376093379236
KHVGSIWDEF	10	Unmodified	_KHVGSIWDEF_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3011127638	2	609.301113	1216.58767	1.4525	0.00088501	-2.6349	-0.0016055	-1.1824	-0.00072045	609.8005794571748	25.588	0.16889	25.576	25.455	25.624	-0.0116	1167	115	0.91857195	0.0698331	0.9170525	372.09076	0	28.28769						322	8	2	NaN	NaN	NaN	0.76548	1	16228	16228		3.5698	0.35817	1	39529	+		11881	9577	6887	7033	9416	9416					-0.011957734993529812
KHVGSIWDEF	10	Unmodified						0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.301113	1216.58767	1.5901	0.00096886	-7.0365	-0.0042874	-5.4464	-0.0033185	609.2955481362678	25.805	0.096533	25.805	25.781	25.877	0	1179	70	0.9112251	0.042269647	0.9112251	369.11472		17.122406	0.11448	-0.0027042	-0.0029137	NaN	3.5698	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13669	+		11882	9577	6887	7033							-0.011957734993529812
KHVGSIWDEF	10	Unmodified						0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.301113	1216.58767	1.4525	0.00088501	-2.6349	-0.0016055	-1.1824	-0.00072045	609.8005794571748	25.588	0.16889	25.576	25.455	25.624	-0.0116	1167	115	0.91857195	0.0698331	0.9170525	372.09076		28.28769	-0.11448	0.0026596	0.0029137	NaN	3.5698	322	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39529	+		11883	9577	6887	7033							-0.011957734993529812
KHVPPWPPV	9	Unmodified	_KHVPPWPPV_					0	0	0			REV__ENST00000590866.2_1_19:1358653-1358806:+|nuORF	REV__ENST00000590866.2_1_19:1358653-1358806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.8030943467501	2	528.803094	1055.59164	0.7788	0.00041183	-8.6966	-0.0045988	-7.9178	-0.004187	529.2990831640957	29.183	0.14482	29.175	29.079	29.224	-0.0077209	1260	82	0.8615505	0.04974979	0.8600311	349.5892	0	20.186829						272	7	3	NaN	NaN	NaN	0.66196	1	10685	10685		2.4615	0.53688	1	18992	+		11884	12913	6888	7034	9417	9417					0.06606360785031029
KHWTRAVELH	10	Unmodified	_KHWTRAVELH_					0	0	0			REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.2351560216333	3	426.235156	1275.68364	1.1536	0.00049169	-2.1711	-0.00092539	-1.0175	-0.0004337	426.2346546905721	12.388	0.14388	12.388	12.316	12.46	0	1455	28	0.7413668	0.016698599	0.7413668	450.22604	0	10.1409						67	7	2	NaN	NaN	NaN	0.77879	1	18338	18338		0.81135	0	1	4445.4	+		11885	11179	6889	7035	9418	9418					0.05682419131403549
KIALFVSSR	9	Unmodified	_KIALFVSSR_					0	0	0			REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.81365903305004	2	510.813659	1019.61277	1.5631	0.00079844	-3.2805	-0.0016757	-1.7174	-0.00087728	510.81235540002075	32.611	0.14479	32.611	32.539	32.683	0	1239	58	0.87444305	0.034975052	0.87444305	354.98172	0	14.198181						221	7	3	NaN	NaN	NaN	0.66529	1	9368	9368		2.1763	0.93449	1	23337	+		11886	11594	6890	7036	9419	9419					0.10374326093904074
KIALFVSSR	9	Unmodified						0	0	0			REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.813659	1019.61277	1.5631	0.00079844	-3.2805	-0.0016757	-1.7174	-0.00087728	510.81235540002075	32.611	0.14479	32.611	32.539	32.683	0	1239	58	0.87444305	0.034975052	0.87444305	354.98172		14.198181	-0.070313	5.5913E-06	0.002601	NaN	2.1763	221	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23337	+		11887	11594	6890	7036							0.10374326093904074
KIALFVSSR	9	Unmodified						0	0	0			REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.813659	1019.61277	1.1765	0.00060098	-3.3078	-0.0016897	-2.1313	-0.0010887	510.8126406051684	32.755	0.072418	32.752	32.703	32.776	-0.0031013	1245	61	0.87076044	0.036813855	0.869241	353.4868		14.944641	0.070313	-2.2303E-05	-0.002601	NaN	2.1763	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5145.6	+		11888	11594	6890	7036							0.10374326093904074
KICGPGCT	8	Unmodified	_KICGPGCT_					0	0	0			REV__ENSG00000164619|ENST00000649409|BMPER	REV__ENSG00000164619|ENST00000649409|BMPER	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.68294167325	2	389.682942	777.35133	2.5797	0.0010053	2.4619	0.00095937	5.0417	0.0019647	389.68344409116276	28.918	0.072439	28.909	28.861	28.933	-0.0083504	1611	25	0.64460784	0.0149281025	0.6430884	262.76288	0	6.0851746						32	4	2	NaN	NaN	NaN	0.8439	1	4376	4376		3.1533	1.483	1	1721.8	+		11889	10345	6891	7037	9420	9420					-0.04625119869001537
KIEDVFTLQ	9	Unmodified	_KIEDVFTLQ_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.8004142720501	2	546.800414	1091.58628	1.0333	0.000565	-0.4652	-0.00025437	0.56808	0.00031062	546.8002072832043	21.007	0.096319	20.993	20.969	21.065	-0.014086	1185	52	0.90755045	0.031242788	0.906031	368.09802	0	12.6719055						112	5	2	NaN	NaN	NaN	0.35794	1	12158	12158		15.463	0	1	18791			11890	2169	6892	7038	9421	9421					0.04414592411922058
KIEEDIRQQN	10	Unmodified	_KIEEDIRQQN_					0	0	0		ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	ENSG00000197312|ENST00000480945|DDI2	ENSG00000197312|ENST00000480945|DDI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8307656602501	2	636.830766	1271.64698	1.9203	0.0012229	-10.182	-0.006484	-8.2614	-0.0052611	636.8243402868688	17.189	0.095968	17.189	17.189	17.285	0	1110	31	0.95342636	0.018325627	0.95342636	386.0218	0	7.419647						96	5	3	NaN	NaN	NaN	0.58645	1	18264	18264		15.822	0.96793	1	7879.7			11891	5693	6893	7039	9422	9422					0.02202077724200535
KIELFIHLAA	10	Unmodified	_KIELFIHLAA_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.5692531586001	3	385.569253	1153.68593	1.4596	0.00056276	-6.6046	-0.0025465	-5.145	-0.0019838	385.56711696538457	15.414	0.14422	15.414	15.342	15.486	0	1431	31	0.75620437	0.018538952	0.75620437	459.75568	0	11.27124						74	7	2	NaN	NaN	NaN	0.72095	1	14941	14941		6.6174	0.3672	1	6499.5	+		11892	10492	6894	7040	9423	9423					0.11523454816529011
KIFEMGPVFTL	11	Oxidation (M)	_KIFEM(Oxidation (M))GPVFTL_		KIFEM(1)GPVFTL		KIFEM(45)GPVFTL	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3466743604	2	649.346674	1296.6788	1.0741	0.00069747	-3.0099	-0.0019545	-1.9358	-0.001257	649.3452989630918	27.687	0.1689	27.677	27.629	27.798	-0.009552	1131	79	0.94059354	0.047677517	0.93907416	380.74707	0	19.299591						324	8	5	NaN	NaN	NaN	0.07051	1	17881	17881		44.633	18.833	1	64959			11893	5794	6895	7041	9424	9424		594			0.04232354153759843
KIGDLVIYIF	10	Unmodified	_KIGDLVIYIF_					0	0	0		tr|U7SMR5|U7SMR5_FUSNUNusGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01797PE=4SV=1	tr|U7SMR5|U7SMR5_FUSNUNusGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01797PE=4SV=1	tr|U7SMR5|U7SMR5_FUSNUNusGdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01797PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.2373920505666	3	394.237392	1179.69035	1.3916	0.00054864	7.293	0.0028752	8.6847	0.0034238	394.2402342685602	21.127	0.14458	21.127	21.103	21.248	0	1470	88	0.7320868	0.05380076	0.7320868	444.97693	0	32.701202						476	7	4	NaN	NaN	NaN	0.22448	1	15828	15828		22.026	0.17538	1	166120			11894	13777	6896	7042	9425	9425					0.1076891923939911
KIGGGGFG	8	Unmodified	_KIGGGGFG_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000128881|Q6IQ55-3|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852	1	692.372601	691.365324	0.32557	0.00022542	8.4342	0.0058396	8.7597	0.006065	692.3783112710767	43.224	0.26347	43.234	43.138	43.402	0.010418	726	61	1.1863867	0.03615451	1.1848673	242.33116	0	7.384903						291	12	2	NaN	NaN	NaN	0.84876	1	2993	2993		0.39566	0.39566	1	38935			11895	3553	6897	7043	9426	9426					0.007296169459436896
KIGGGGFG	8	Unmodified						0	0	0		ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000128881|Q6IQ55-3|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.2123	0.00083939	8.9373	0.006188	10.15	0.0070274	692.3794002658647	43.249	0.19165	43.249	43.177	43.369	0	729	49	1.184579	0.02892363	1.184579	241.96193		5.907913	0.0076554	0.00022642	-0.00014409	NaN	0.39566	242	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28446			11896	3553	6897	7043							0.007296169459436896
KILELLYSWT	10	Unmodified	_KILELLYSWT_					0	0	0		nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3606390154001	2	633.360639	1264.70673	1.2371	0.00078355	-4.9172	-0.0031144	-3.6801	-0.0023308	633.3578452268738	42.938	0.26385	42.938	42.866	43.13	0	1239	58	0.87444305	0.03499019	0.87444305	354.064	0	14.167603						296	12	3	NaN	NaN	NaN	0.76548	1	18102	18102		3.5698	0.35817	1	28723			11897	1189	6898	7044	9427	9427					0.08496000405534687
KILELLYSWT	10	Unmodified	_KILELLYSWT_					0	0	0		nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.3606390154001	2	633.360639	1264.70673	1.0947	0.00069334	-4.9016	-0.0031044	-3.8069	-0.0024111	633.3581247854233	44.302	0.047977	44.314	44.266	44.314	0.011646	1233	40	0.87812483	0.023927689	0.8766054	355.55478	0	9.688385						46	3	2	NaN	NaN	NaN	0.76548	1	17303	17303		3.5698	0.35817	1	3116.2			11898	1189	6898	7044	9428	9428					0.08496000405534687
KILELLYSWT	10	Unmodified						0	0	0		nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1;nc|ENSG00000100083|Q9UJY5-4|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.360639	1264.70673	0.58263	0.00036901	-3.544	-0.0022446	-2.9614	-0.0018756	633.3586011544942	42.912	0.28758	42.922	42.851	43.138	0.010418	1236	58	0.876284	0.03498262	0.8747646	354.80942		14.164551	-0.0075801	0.0010715	0.00016078	NaN	3.5698	298	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25923			11899	1189	6898	7044							0.08496000405534687
KILYDMLT	8	Unmodified	_KILYDMLT_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.7753536144999	2	498.775354	995.536154	1.2876	0.00064224	-5.6085	-0.0027974	-4.3209	-0.0021552	498.7728764838181	21.946	0.12038	21.932	21.908	22.028	-0.013895	1284	52	0.8468043	0.031354427	0.8452849	343.87244	0	12.732483						77	6	2	NaN	NaN	NaN	0.81251	1	8248	8248		7.5404	1.8462	1	6216.9	+		11900	10746	6899	7045	9429	9429					0.03820766482385807
KILYDMLT	8	Unmodified						0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	498.775354	995.536154	1.7993	0.00089743	-4.4445	-0.0022168	-2.6452	-0.0013194	498.7728980946093	21.946	0.096378	21.946	21.922	22.019	0	1281	49	0.84864825	0.029508412	0.84864825	344.62125		11.98288	0.0070739	0.00061887	0.0016817	NaN	7.5404	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6480.5	+		11901	10746	6899	7045							0.03820766482385807
KILYDMLT	8	Unmodified						0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.775354	995.536154	1.2876	0.00064224	-5.6085	-0.0027974	-4.3209	-0.0021552	498.7728764838181	21.946	0.12038	21.932	21.908	22.028	-0.013895	1284	52	0.8468043	0.031354427	0.8452849	343.87244		12.732483	-0.0070739	-0.00054237	-0.0016817	NaN	7.5404	77	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6216.9	+		11902	10746	6899	7045							0.03820766482385807
KINEKPQVI	9	Unmodified	_KINEKPQVI_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.82422371935	2	534.824224	1067.63389	1.9976	0.0010684	-2.7224	-0.001456	-0.72483	-0.00038766	534.8228822986067	14.213	0.14415	14.213	14.141	14.285	0	1272	43	0.854179	0.02580595	0.854179	346.5477	0	10.469696						94	7	3	NaN	NaN	NaN	0.061945	1	11464	11464		41.839	21.39	1	9881.3			11903	1628	6900	7046	9430	9430					0.10278291402732975
KIPCNSAE	8	Unmodified	_KIPCNSAE_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.4134792219	1	861.413479	860.406203	0.31932	0.00027506	6.7743	0.0058355	7.0936	0.0061105	861.4209921398747	55.098	0.048073	55.097	55.097	55.145	-0.0006218	339	40	1.4179583	0.023175359	1.4164388	288.52475	0	4.7156982						55	3	2	NaN	NaN	NaN	0.82797	1	5398	5398		5.4659	0.55612	1	2988.9			11904	104	6901	7047	9431	9431					-0.029584097967358503
KIPEKVTPMEA	11	Unmodified	_KIPEKVTPMEA_					0	0	0		SCG3|p.A234E|1|0.16|ENSG00000104112|chr15:51692169-51692169|C/A|missense_variant	SCG3|p.A234E|1|0.16|ENSG00000104112|chr15:51692169-51692169|C/A|missense_variant	SCG3|p.A234E|1|0.16|ENSG00000104112|chr15:51692169-51692169|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8417561580001	2	621.841756	1241.66896	1.4944	0.00092929	1.7609	0.001095	3.2553	0.0020243	622.342669302913	54.548	0.072334	54.548	54.5	54.572	0	855	67	1.1084836	0.03993225	1.1084836	448.91745	0	16.171875						206	4	5	NaN	NaN	NaN	0.77843	1	17579	17579		0.51604	0	1	19774			11905	13672	6902	7048	9432	9432					0.05779166148386139
KIQYTDTKMIL	11	Unmodified	_KIQYTDTKMIL_					0	0	0		nc|ENSG00000162739|Q96DU3-3|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3759631161	2	677.375963	1352.73737	1.7648	0.0011954	-5.6298	-0.0038135	-3.865	-0.0026181	677.8743329056067	25.564	0.12061	25.564	25.539	25.66	0	1071	49	0.977233	0.029283106	0.977233	395.40564	0	11.84845						109	6	3	NaN	NaN	NaN	0.43809	1	19582	19582		20.688	1.5241	1	14372			11906	4170	6903	7049	9433	9433					0.07511410728238843
KIQYTDTKMIL	11	Unmodified						0	0	0		nc|ENSG00000162739|Q96DU3-3|SLAMF6;nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	nc|ENSG00000162739|Q96DU3-3|SLAMF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.375963	1352.73737	1.7203	0.0011653	-4.6106	-0.0031231	-2.8903	-0.0019578	677.3734584455348	25.588	0.072378	25.576	25.552	25.624	-0.0116	1071	37	0.977233	0.02195996	0.97571355	395.40564		8.885376	0.0061442	0.00050191	-0.00075972	NaN	20.688	107	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14232			11907	4170	6903	7049							0.07511410728238843
KIRASCLKELL	11	Unmodified	_KIRASCLKELL_					0	0	0		nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3866651881501	2	637.386665	1272.75878	1.1134	0.00070968	-5.2331	-0.0033355	-4.1197	-0.0026258	637.8843391731771	41.401	0.072227	41.401	41.377	41.45	0	1200	40	0.89836043	0.02390188	0.89836043	363.72336	0	9.677246						93	4	3	NaN	NaN	NaN	0.75376	1	18282	18282		3.9281	0.7165	1	6865.1			11908	7985	6904	7050	9434	9434					0.1333084054763276
KIRASCLKELL	11	Unmodified						0	0	0		nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.386665	1272.75878	1.2484	0.0007957	-5.2202	-0.0033273	-3.9718	-0.0025316	637.3831750390225	41.472	0.096325	41.481	41.384	41.481	0.0082588	1197	43	0.9001988	0.02573353	0.8986794	364.46768		10.418854	0.039536	6.4947E-06	0.00015948	NaN	3.9281	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9076			11909	7985	6904	7050							0.1333084054763276
KIREDNKR	8	Unmodified	_KIREDNKR_					0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.80689663345	2	529.806897	1057.59924	1.7169	0.00090962	-7.3734	-0.0039065	-5.6565	-0.0029968	529.8023509681004	27.905	0.096537	27.905	27.881	27.977	0	1233	49	0.87812483	0.02945429	0.87812483	356.30582	0	11.951294						135	5	3	NaN	NaN	NaN	0.6053	1	11001	11001		24.961	4.4056	1	18706			11910	4195	6905	7051	9435	9435					0.07274468314653859
KIREDNKR	8	Unmodified						0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.806897	1057.59924	0.71469	0.00037865	-6.9551	-0.0036849	-6.2404	-0.0033062	529.8029917412892	28.073	0.24138	28.064	27.992	28.233	-0.0089779	1224	43	0.883646	0.025764108	0.88212657	358.54605		10.4539795	0.079598	0.00018507	0.0020009	NaN	24.961	154	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17715			11911	4195	6905	7051							0.07274468314653859
KISDRYYLL	9	Unmodified	_KISDRYYLL_					0	0	0		nc|ENSG00000143355|Q9NQ69-3|LHX9;nc|ENSG00000143355|Q9NQ69-4|LHX9;nc|ENSG00000143355|Q9NQ69-2|LHX9;ENSG00000143355|ENST00000367387|LHX9;ENSG00000106689|ENST00000373615|LHX2	nc|ENSG00000143355|Q9NQ69-3|LHX9	nc|ENSG00000143355|Q9NQ69-3|LHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8295060625001	2	585.829506	1169.64446	1.6578	0.00097121	-2.0369	-0.0011933	-0.37903	-0.00022205	585.828366342067	21.031	0.14438	21.031	20.983	21.127	0	1161	52	0.9222442	0.031219184	0.9222442	373.74643	0	12.651794						228	7	4	NaN	NaN	NaN	0.13999	1	15485	15485		30.035	15.61	1	37315			11912	1614	6906	7052	9436	9436					0.06642274057185205
KISDRYYLL	9	Unmodified	_KISDRYYLL_					0	0	0		nc|ENSG00000143355|Q9NQ69-3|LHX9;nc|ENSG00000143355|Q9NQ69-4|LHX9;nc|ENSG00000143355|Q9NQ69-2|LHX9;ENSG00000143355|ENST00000367387|LHX9;ENSG00000106689|ENST00000373615|LHX2	nc|ENSG00000143355|Q9NQ69-3|LHX9	nc|ENSG00000143355|Q9NQ69-3|LHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.8295060625001	2	585.829506	1169.64446	1.1905	0.00069745	-1.5306	-0.00089668	-0.34009	-0.00019924	585.8285769608049	21.176	0.26476	21.162	21.065	21.33	-0.014004	1161	52	0.9222442	0.031219184	0.92072475	373.7464	0	12.651794						302	12	4	NaN	NaN	NaN	0.28943	1	14948	14948		19.592	4.4165	1	39991			11913	1614	6906	7052	9437	9437					0.06642274057185205
KITDVIIGF	9	Unmodified	_KITDVIIGF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.30259282025	2	503.302593	1004.59063	1.9545	0.0009837	-3.1526	-0.0015867	-1.1981	-0.00060301	503.30151158694366	28.05	0.21718	28.05	28.001	28.219	0	1302	91	0.8357362	0.05534035	0.8357362	339.33618	0	22.46997						385	10	4	NaN	NaN	NaN	0.030696	1	8779	8779		58.2	18.741	1	85990			11914	1231	6907	7053	9438	9438					0.08852101625473097
KITDVIIGF	9	Unmodified	_KITDVIIGF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.30259282025	2	503.302593	1004.59063	1.0565	0.00053174	-2.42	-0.001218	-1.3635	-0.00068626	503.3018993376165	28.073	0.19311	28.064	28.04	28.233	-0.0089779	1296	91	0.8394264	0.05533433	0.83790696	340.8345	0	22.46753						303	9	4	NaN	NaN	NaN	0.017076	1	8605	8605		75.698	23.074	1	81718			11915	1231	6907	7053	9439	9439					0.08852101625473097
KITTGYWSF	9	Unmodified	_KITTGYWSF_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.78202455365	2	551.782025	1101.5495	2.0204	0.0011148	2.4308	0.0013413	4.4512	0.0024561	551.7840084278351	17.738	0.11982	17.724	17.652	17.772	-0.013786	1272	58	0.854179	0.03501284	0.8526596	346.41177	0	14.199432						111	6	2	NaN	NaN	NaN	0.47587	1	12574	12574		10.605	3.0174	1	6362.1	+		11916	9133	6908	7054	9440	9440					0.0027834058598728006
KIVTTYDMMIQ	11	Unmodified	_KIVTTYDMMIQ_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8408988782501	2	671.840899	1341.66724	1.4707	0.00098806	-4.915	-0.0033021	-3.4444	-0.0023141	671.8378448533916	28.436	0.1207	28.436	28.412	28.532	0	1167	49	0.91857195	0.029384315	0.91857195	371.7014	0	11.890411						181	6	4	NaN	NaN	NaN	0.76937	1	19437	19437		2.1026	0.17793	1	16970			11917	3858	6909	7055	9441	9441					0.010077890681259305
KIYFPSSYD	9	Unmodified	_KIYFPSSYD_					0	0	0			REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2714896571001	2	560.27149	1118.52843	2.0592	0.0011537	0.94964	0.00053205	3.0089	0.0016858	560.2736904188407	18.29	0.11993	18.276	18.156	18.276	-0.01395	1254	67	0.8652351	0.04050839	0.86371565	350.82974	0	16.42508						163	6	2	NaN	NaN	NaN	0.63698	1	13207	13207		3.9685	0.39873	1	16642	+		11918	13450	6910	7056	9442	9442					-0.026096695135038317
KIYFPSSYD	9	Unmodified						0	0	0			REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	REV__tr|U7SNP6|U7SNP6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01840PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.27149	1118.52843	2.0592	0.0011537	0.94964	0.00053205	3.0089	0.0016858	560.2736904188407	18.29	0.11993	18.276	18.156	18.276	-0.01395	1254	67	0.8652351	0.04050839	0.86371565	350.82974		16.42508	0.015505	-0.00039782	0.00016137	NaN	3.9685	163	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16642	+		11919	13450	6910	7056							-0.026096695135038317
KIYPSREEY	9	Unmodified	_KIYPSREEY_					0	0	0		nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	nc|ENSG00000204227|Q06587-2|RING1	nc|ENSG00000204227|Q06587-2|RING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8009455883001	2	592.800946	1183.58734	1.9279	0.0011428	-1.8503	-0.0010969	0.077575	4.5987E-05	592.7989570920419	13.613	0.096011	13.613	13.589	13.685	0	1224	37	0.883646	0.022078753	0.883646	358.05502	0	8.946381						104	5	3	NaN	NaN	NaN	0.33202	1	15959	15959		16.858	1.3956	1	8005.6			11920	5868	6911	7057	9443	9443					0.002888067808271444
KIYSEYQRNE	10	Unmodified	_KIYSEYQRNE_					0	0	0		tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3253161416002	2	665.325316	1328.63608	2.3053	0.0015338	-0.26276	-0.00017482	2.0426	0.001359	665.3255636830619	25.539	0.16893	25.528	25.431	25.6	-0.0116	1098	70	0.960755	0.042142153	0.9592356	388.80966	0	17.054565						170	8	3	NaN	NaN	NaN	0.71559	1	18383	18383		6.9844	0	1	11046			11921	13899	6912	7058	9444	9444					-0.015093246500782698
KIYSEYQRNE	10	Unmodified						0	0	0		tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	tr|U7SV73|U7SV73_FUSNUApea-likeHEPNdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01541PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	665.325316	1328.63608	2.0542	0.0013667	2.8179	0.0018748	4.8721	0.0032415	665.3258983004607	25.539	0.072376	25.539	25.491	25.564	0	1095	37	0.9625867	0.021978915	0.9625867	389.5509		8.894684	0.0059377	0.0020604	0.0016756	NaN	6.9844	77	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5784.7			11922	13899	6912	7058							-0.015093246500782698
KKAGGGGG	8	Unmodified	_KKAGGGGG_					0	0	0		ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	1.1674	0.00073706	6.9653	0.0043975	8.1327	0.0051346	631.3565921106447	41.666	0.24048	41.666	41.618	41.859	0	762	103	1.1646824	0.061548233	1.1646824	238.3445	0	12.595444						365	11	2	NaN	NaN	NaN	0.84887	1	1465	1465		0.32989	0.32989	1	63424			11923	1557	6913	7059	9445	9445					0.014964462861485117
KKAKRLFL	8	Unmodified	_KKAKRLFL_					0	0	0		tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.34238668275003	2	502.342387	1002.67022	1.7209	0.00086449	-6.2111	-0.0031201	-4.4902	-0.0022556	502.83951745004384	55.725	0.048267	55.725	55.701	55.749	0	1215	40	0.8891654	0.023917377	0.8891654	361.03952	0	9.711487						67	3	3	NaN	NaN	NaN	0.84887	1	8712	8712		0.32989	0	1	6210.3			11924	13910	6914	7060	9446	9446					0.1689921309013016
KKALGILD	8	Unmodified	_KKALGILD_					0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.5454796729001	1	857.54548	856.538203	-0.42304	-0.00036278	-5.4335	-0.0046595	-5.8566	-0.0050223	857.5421669560925	56.779	0.12017	56.778	56.754	56.874	-0.00056458	249	103	1.4713576	0.060454845	1.4698381	299.4117	0	12.302155						369	6	5	NaN	NaN	NaN	0.84727	1	5361	5361		1.2418	0	1	80323	+		11925	13388	6915	7061	9447	9447					0.1041956328251672
KKALGILD	8	Unmodified						0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	857.54548	856.538203	2.0838	0.001787	-8.2604	-0.0070837	-6.1766	-0.0052967	857.5396955977055	56.78	0.12018	56.78	56.756	56.876	0	252	88	1.4695803	0.051561713	1.4695803	299.05005		10.492462	0.0011122	-0.0011285	-0.0001289	NaN	1.2418	343	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68584	+		11926	13388	6915	7061							0.1041956328251672
KKALGILD	8	Unmodified						0	0	0			REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	REV__tr|U7SGN9|U7SGN9_FUSNU4-hydroxy-3-methylbut-2-en-1-yldiphosphatesynthase(flavodoxin)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispGPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.54548	856.538203	-0.42304	-0.00036278	-5.4335	-0.0046595	-5.8566	-0.0050223	857.5421669560925	56.779	0.12017	56.778	56.754	56.874	-0.00056458	249	103	1.4713576	0.060454845	1.4698381	299.4117		12.302155	-0.0011122	0.0012958	0.0001289	NaN	1.2418	369	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80323	+		11927	13388	6915	7061							0.1041956328251672
KKAVRYNDY	9	Unmodified	_KKAVRYNDY_					0	0	0		ENSG00000186452|ENST00000398458|TMPRSS12	ENSG00000186452|ENST00000398458|TMPRSS12	ENSG00000186452|ENST00000398458|TMPRSS12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.8091049714001	2	578.809105	1155.60366	1.6856	0.00097561	-11.649	-0.0067425	-9.9634	-0.0057669	578.8022158025934	17.21	0.16784	17.196	17.124	17.292	-0.013567	1215	43	0.8891654	0.02575022	0.88764596	360.39203	0	10.43692						198	8	3	NaN	NaN	NaN	0.53317	1	14513	14513		8.2448	1.2605	1	21352			11928	5470	6916	7062	9448	9448					0.03207932737564079
KKCPRNYVV	9	Unmodified	_KKCPRNYVV_					0	0	0		nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000146648|P00533-2|EGFR	nc|ENSG00000146648|P00533-2|EGFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.81059341535	2	553.810593	1105.60663	1.5223	0.00084305	-7.5218	-0.0041657	-5.9996	-0.0033226	553.8059528732572	21.705	0.072254	21.691	21.667	21.74	-0.013897	1212	52	0.8910048	0.03127992	0.88948536	361.33008	0	12.684998						97	4	3	NaN	NaN	NaN	0.34922	1	12733	12733		23.334	13.588	1	8953.5			11929	3569	6917	7063	9449	9449					0.05805484590700871
KKEGRIDDLL	10	Unmodified	_KKEGRIDDLL_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000486857.5_1_2:171910255-171939320:-|nuORF;ENST00000478683.1_1_2:171902682-171910351:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;TLK1|p.T688Kfs*10|1|0.24|ENSG00000198586|chr2:170996708-170996714|AATATTG/-|frameshift_variant;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	396.2311886582	3	396.231189	1185.67174	1.4013	0.00055525	7.447	0.0029508	8.8484	0.003506	396.2341181933278	13.589	0.19194	13.579	13.459	13.651	-0.010098	1482	31	0.72465914	0.018571138	0.7231397	440.4366	0	11.287231						99	9	2	NaN	NaN	NaN	0.74182	1	15428	15428		2.4611	0	1	7422.3			11930	3577	6918	7064	9450	9450					0.08632757597570162
KKEVFGLWSG	10	Unmodified	_KKEVFGLWSG_					0	0	0			REV__ENST00000540458.5_1_12:6949280-6949580:+|nuORF	REV__ENST00000540458.5_1_12:6949280-6949580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8163986872501	2	575.816399	1149.61824	1.1147	0.00064189	2.7967	0.0016104	3.9115	0.0022523	575.8177793830716	14.38	0.21556	14.369	14.273	14.489	-0.011219	1227	43	0.88180584	0.025764108	0.8802864	357.43097	0	10.443207						185	10	3	NaN	NaN	NaN	0.73444	1	14294	14294		5.6942	0.96509	1	18912	+		11931	12695	6919	7065	9451	9451					0.04942004885697315
KKEVVGYP	8	Unmodified	_KKEVVGYP_					0	0	0			REV__NDUFB6|p.I97V|1|0.22|ENSG00000165264|chr9:32558939-32558939|T/C|missense_variant	REV__NDUFB6|p.I97V|1|0.22|ENSG00000165264|chr9:32558939-32558939|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.26601034870004	2	460.26601	918.517468	1.5011	0.00069091	0.88231	0.0004061	2.3834	0.001097	460.2659673464017	18.053	0.095963	18.053	18.029	18.125	0	1335	34	0.8154261	0.020323336	0.8154261	331.50845	0	8.26236						79	5	2	NaN	NaN	NaN	0.75561	1	6392	6392		15.175	2.1725	1	9498.4	+		11932	13268	6920	7066	9452	9452					0.054949729028635375
KKFILLVV	8	Unmodified	_KKFILLVV_					0	0	0			REV__ENST00000479012.1_1_2:176794697-176802294:-|nuORF	REV__ENST00000479012.1_1_2:176794697-176802294:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.33623867235013	2	480.336239	958.657924	1.9351	0.00092952	-1.8376	-0.00088266	0.097563	4.6863E-05	480.33570060200475	57.933	0.024025	57.933	57.933	57.957	0	1194	43	0.902037	0.02573073	0.902037	366.49347	0	10.454254						43	2	2	NaN	NaN	NaN	0.84945	1	7305	7305		0	0	1	2641.8	+		11933	12365	6921	7067	9453	9453					0.17694176627105662
KKGAAGRG	8	Unmodified	_KKGAAGRG_					0	0	0		ENST00000438961.1_1_7:766900-790557:+|nuORF	ENST00000438961.1_1_7:766900-790557:+|nuORF	ENST00000438961.1_1_7:766900-790557:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.4474969628002	1	744.447497	743.44022	1.6177	0.0012043	7.4037	0.0055117	9.0214	0.006716	744.4531138178766	56.541	0.16785	56.541	56.421	56.589	0	588	61	1.2693287	0.035969377	1.2693287	258.92	0	7.337097						187	8	2	NaN	NaN	NaN	0.84887	1	3967	3967		0.32989	0	1	26690			11934	6998	6922	7068	9454	9454					0.058237994771957347
KKGAAGRG	8	Unmodified						0	0	0		ENST00000438961.1_1_7:766900-790557:+|nuORF	ENST00000438961.1_1_7:766900-790557:+|nuORF	ENST00000438961.1_1_7:766900-790557:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	744.447497	743.44022	-0.14046	-0.00010456	8.2565	0.0061466	8.1161	0.006042	744.4538540739919	56.323	0.14399	56.322	56.226	56.37	-0.00056458	579	49	1.2747238	0.028766274	1.2732043	260.0205		5.867798	-0.1092	0.00046082	0.0019378	NaN	0.32989	122	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10546			11935	6998	6922	7068							0.058237994771957347
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	1.074	0.0006781	3.2686	0.0020636	4.3426	0.0027417	631.354081561936	40.777	0.19191	40.777	40.681	40.873	0	762	58	1.1646824	0.034381628	1.1646824	238.34451	0	7.03598						247	9	2	NaN	NaN	NaN	0.84945	1	1458	1458		0	0	1	69637			11936	5825	6923	7069	9455	9455					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	2.4503	0.001547	2.5069	0.0015827	4.9571	0.0031297	631.3537311962643	26.215	0.26545	26.215	26.119	26.384	0	819	196	1.1302601	0.11807692	1.1302601	231.30023	0	24.163666						625	12	2	NaN	NaN	NaN	0.84945	1	1460	1460		0	0	1	252150			11937	5825	6923	7069	9456	9456					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	1.379	0.00087062	5.1058	0.0032236	6.4848	0.0040942	631.3553671652145	27.181	0.26546	27.181	27.036	27.302	0	822	58	1.1284465	0.034455538	1.1284465	230.92906	0	7.0510864						227	12	2	NaN	NaN	NaN	0.84945	1	1461	1461		0	0	1	23549			11938	5825	6923	7069	9457	9457					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941002	1	631.3522	630.344923	2.0493	0.0012938	4.883	0.0030829	6.9323	0.0043767	631.3554980721656	26.07	0.14479	26.07	25.926	26.07	0	810	70	1.1356999	0.041704893	1.1356999	232.41342	0	8.534607						160	7	2	NaN	NaN	NaN	0.84945	1	1463	1463		0	0	1	15939			11939	5825	6923	7069	9458	9458					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	2.1319	0.001346	2.5741	0.0016252	4.706	0.0029711	631.3536831076605	26.239	0.24128	26.228	26.131	26.373	-0.011137	819	193	1.1302601	0.11622918	1.1287407	231.30023	0	23.785538						808	11	4	NaN	NaN	NaN	0.84945	1	1380	1380		0	0	1	257410			11940	5825	6923	7069	9459	9459					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	1.0459	0.00066031	4.5394	0.002866	5.5853	0.0035263	631.3548109722798	27.18	0.2172	27.17	27.049	27.267	-0.010124	822	85	1.1284465	0.05080104	1.126927	230.92906	0	10.396103						194	10	2	NaN	NaN	NaN	0.84945	1	1381	1381		0	0	1	22953			11941	5825	6923	7069	9460	9460					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	1.6528	0.0010435	4.4645	0.0028187	6.1174	0.0038622	631.3549364784939	25.226	0.12061	25.214	25.189	25.31	-0.012011	825	58	1.1266327	0.0344702	1.1251132	230.55788	0	7.0541077						125	6	2	NaN	NaN	NaN	0.84945	1	1383	1383		0	0	1	14517			11942	5825	6923	7069	9461	9461					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941002	1	631.3522	630.344923	1.9924	0.0012579	5.5485	0.0035031	7.541	0.004761	631.3558606137245	26.094	0.048286	26.083	26.035	26.083	-0.011137	810	70	1.1356999	0.041700363	1.1341804	232.41342	0	8.533691						101	3	2	NaN	NaN	NaN	0.84945	1	1385	1385		0	0	1	14425			11943	5825	6923	7069	9462	9462					0.014964462861485117
KKGAGGGG	8	Unmodified						0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	631.3522	630.344923	1.7609	0.0011118	3.9682	0.0025053	5.7291	0.0036171	631.3547464493288	25.226	0.12067	25.226	25.202	25.322	0	828	61	1.1248186	0.036278725	1.1248186	230.18665		7.4241943	0.0061151	-0.00012982	-0.0001473	NaN	0	115	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13594			11944	5825	6923	7069							0.014964462861485117
KKGGGAAS	8	Unmodified	_KKGGGAAS_					0	0	0		nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2	nc|ENSG00000183864|Q14106-2|TOB2	nc|ENSG00000183864|Q14106-2|TOB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3784143446001	1	675.378414	674.371138	1.319	0.0008908	1.7851	0.0012056	3.104	0.0020964	675.3793952694068	27.157	0.26545	27.157	27.012	27.277	0	744	94	1.1755381	0.056090474	1.1755381	240.2327	0	11.462631						323	12	2	NaN	NaN	NaN	0.84887	1	2720	2720		0.32989	0	1	137810			11945	5333	6924	7070	9463	9463					0.02092715457615668
KKGGGGAG	8	Unmodified	_KKGGGGAG_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.3521995941001	1	631.3522	630.344923	1.7191	0.0010854	-1.745	-0.0011017	-0.025842	-1.6315E-05	631.353251998024	51.948	0.21558	51.948	51.9	52.116	0	807	46	1.1375128	0.02719009	1.1375128	232.78445	0	5.56427						270	10	4	NaN	NaN	NaN	0.84887	1	1457	1457		0.32989	0	1	22615			11946	1711	6925	7071	9464	9464					0.01496446286137143
KKGGGGAG	8	Unmodified	_KKGGGGAG_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.3521995941001	1	631.3522	630.344923	0.9927	0.00062674	4.6478	0.0029344	5.6405	0.0035611	631.3551467225923	40.751	0.21606	40.757	40.661	40.877	0.0067558	759	52	1.1664921	0.030762553	1.1649727	238.71486	0	6.295349						231	10	2	NaN	NaN	NaN	0.84887	1	1382	1382		0.32989	0	1	64838			11947	1711	6925	7071	9465	9465					0.01496446286137143
KKGGGPGH	8	Unmodified	_KKGGGPGH_					0	0	0			REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4052977971	1	737.405298	736.398021	1.6151	0.001191	-0.50963	-0.0003758	1.1055	0.0008152	737.4050402282517	54.572	0.072296	54.572	54.548	54.62	0	567	58	1.2819146	0.034161806	1.2819146	261.53262	0	6.969574						73	4	2	NaN	NaN	NaN	0.84876	1	3859	3859		0.39566	0.39566	1	4695	+		11948	8830	6926	7072	9466	9466					0.01927824068798145
KKGGGPGH	8	Unmodified						0	0	0			REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	REV__PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.405298	736.398021	1.6151	0.001191	-0.50963	-0.0003758	1.1055	0.0008152	737.4050402282517	54.572	0.072296	54.572	54.548	54.62	0	567	58	1.2819146	0.034161806	1.2819146	261.53262		6.969574	0	0	0	NaN	0.39566	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4695	+		11949	8830	6926	7072							0.01927824068798145
KKGGLDGKC	9	Unmodified	_KKGGLDGKC_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.24729466680003	2	453.247295	904.480036	0.30174	0.00013676	-3.7684	-0.001708	-3.4666	-0.0015712	453.2459505122666	35.072	0.19303	35.072	34.975	35.168	0	1419	31	0.76361835	0.018532872	0.76361835	310.51718	0	7.5362244						98	9	2	NaN	NaN	NaN	0.64666	1	6160	6160		3.5698	0.78459	1	5932.8	+		11950	8754	6927	7073	9467	9467					0.023975583655897026
KKGGLDGKC	9	Unmodified						0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	453.247295	904.480036	0.30174	0.00013676	-3.7684	-0.001708	-3.4666	-0.0015712	453.2459505122666	35.072	0.19303	35.072	34.975	35.168	0	1419	31	0.76361835	0.018532872	0.76361835	310.51718		7.5362244	0.012807	0.00037376	0.0016863	NaN	3.5698	98	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5932.8	+		11951	8754	6927	7073							0.023975583655897026
KKGGLDGKC	9	Unmodified						0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	453.247295	904.480036	0.98068	0.00044449	-4.5238	-0.0020504	-3.5431	-0.0016059	453.24511854114235	35.046	0.14477	35.046	34.998	35.143	-4.5776E-05	1422	34	0.7617651	0.020382881	0.7602457	309.7636		8.288483	-0.012807	-0.00031103	-0.0016863	NaN	3.5698	121	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8893.4	+		11952	8754	6927	7073							0.023975583655897026
KKGGPGRG	8	Unmodified	_KKGGPGRG_					0	0	0		ENST00000545388.2_1_16:71955203-71956613:+|nuORF;ENST00000587765.1_1_19:38282860-38283352:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	ENST00000545388.2_1_16:71955203-71956613:+|nuORF	ENST00000545388.2_1_16:71955203-71956613:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.4474969628002	1	756.447497	755.44022	1.5428	0.001167	3.8856	0.0029392	5.4283	0.0041063	756.4497239885238	27.712	0.096527	27.712	27.664	27.76	0	537	49	1.2998781	0.028729439	1.2998781	265.0753	0	5.8585815						90	5	2	NaN	NaN	NaN	0.84887	1	4165	4165		0.32989	0	1	6905.3			11953	5252	6928	7074	9468	9468					0.052717994771910526
KKGGPGRG	8	Unmodified						0	0	0		ENST00000545388.2_1_16:71955203-71956613:+|nuORF;ENST00000587765.1_1_19:38282860-38283352:+|nuORF;nc|ENSG00000182149|P53990-6|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	ENST00000545388.2_1_16:71955203-71956613:+|nuORF	ENST00000545388.2_1_16:71955203-71956613:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	756.447497	755.44022	1.4231	0.0010765	4.2333	0.0032022	5.6563	0.0042787	756.4503617309624	27.711	0.12062	27.702	27.653	27.774	-0.009552	534	46	1.3016734	0.026932359	1.300154	265.44138		5.4921265	-0.0051757	0.00013318	0.00013793	NaN	0.32989	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8584.1			11954	5252	6928	7074							0.052717994771910526
KKGGSGGG	8	Unmodified	_KKGGSGGG_					0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3471142162002	1	647.347114	646.339838	1.5503	0.0010036	1.1763	0.00076144	2.7266	0.001765	647.3493220655092	36.639	0.19258	36.639	36.591	36.784	0	753	55	1.1701111	0.032570362	1.1701111	239.32974	0	6.6618195						192	9	3	NaN	NaN	NaN	0.84945	1	1949	1949		0	0	1	13984	+		11955	12283	6929	7075	9469	9469					0.0025214242353968075
KKGGSGGG	8	Unmodified	_KKGGSGGG_					0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3471142162002	1	647.347114	646.339838	1.6125	0.0010438	3.1523	0.0020406	4.7648	0.0030845	647.3489612159137	36.663	0.21665	36.663	36.591	36.808	0	834	82	1.12119	0.04898417	1.12119	229.32361	0	10.019012						277	10	2	NaN	NaN	NaN	0.84945	1	1951	1951		0	0	1	25724	+		11956	12283	6929	7075	9470	9470					0.0025214242353968075
KKGGSGGG	8	Unmodified	_KKGGSGGG_					0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3471142162002	1	647.347114	646.339838	1.5078	0.00097604	3.7726	0.0024422	5.2804	0.0034182	647.3493023155927	36.685	0.12025	36.687	36.615	36.735	0.0016785	843	82	1.1157455	0.04898417	1.1142261	228.21004	0	10.018997						198	6	2	NaN	NaN	NaN	0.84945	1	1854	1854		0	0	1	16887	+		11957	12283	6929	7075	9471	9471					0.0025214242353968075
KKGGSGGG	8	Unmodified	_KKGGSGGG_					0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3471142162002	1	647.347114	646.339838	1.6086	0.0010413	4.4767	0.002898	6.0852	0.0039393	647.3497789470468	36.613	0.19245	36.615	36.567	36.759	0.0016785	753	43	1.1701111	0.025329828	1.1685916	239.32973	0	5.1808624						131	9	2	NaN	NaN	NaN	0.84945	1	1855	1855		0	0	1	11050	+		11958	12283	6929	7075	9472	9472					0.0025214242353968075
KKGGSGGG	8	Unmodified						0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	647.347114	646.339838	1.6125	0.0010438	3.1523	0.0020406	4.7648	0.0030845	647.3489612159137	36.663	0.21665	36.663	36.591	36.808	0	834	82	1.12119	0.04898417	1.12119	229.32361		10.019012	-0.011824	-0.00014525	0.0034819	NaN	0	277	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25724	+		11959	12283	6929	7075							0.0025214242353968075
KKGGSGGG	8	Unmodified						0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	647.347114	646.339838	1.5503	0.0010036	1.1763	0.00076144	2.7266	0.001765	647.3493220655092	36.639	0.19258	36.639	36.591	36.784	0	753	55	1.1701111	0.032570362	1.1701111	239.32974		6.6618195	0.012224	-0.0015785	0.00075972	NaN	0	192	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13984	+		11960	12283	6929	7075							0.0025214242353968075
KKGGSGGG	8	Unmodified						0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	647.347114	646.339838	1.5078	0.00097604	3.7726	0.0024422	5.2804	0.0034182	647.3493023155927	36.685	0.12025	36.687	36.615	36.735	0.0016785	843	82	1.1157455	0.04898417	1.1142261	228.21004		10.018997	0.011824	0.00025636	-0.0034819	NaN	0	198	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16887	+		11961	12283	6929	7075							0.0025214242353968075
KKGGSGGG	8	Unmodified						0	0	0			REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	REV__ENST00000464058.1_1_21:18981288-18985128:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	647.347114	646.339838	1.6086	0.0010413	4.4767	0.002898	6.0852	0.0039393	647.3497789470468	36.613	0.19245	36.615	36.567	36.759	0.0016785	753	43	1.1701111	0.025329828	1.1685916	239.32973		5.1808624	-0.012224	0.00055804	-0.00075972	NaN	0	131	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11050	+		11962	12283	6929	7075							0.0025214242353968075
KKKDHLISGLL	11	Unmodified	_KKKDHLISGLL_					0	0	0		ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	ENST00000313833.4_1_14:55817358-55817442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3928048110502	2	626.392805	1250.77106	1.0766	0.00067439	-7.4867	-0.0046896	-6.4101	-0.0040152	626.8896286051635	39.093	0.40962	39.093	39.044	39.454	0	1263	115	0.85970795	0.06993884	0.85970795	348.13965	0	28.321777						822	18	2	NaN	NaN	NaN	0.73455	1	17796	17796		5.1889	1.9773	1	275510			11963	6456	6930	7076	9473	9473					0.15570200282331825
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	2.396	0.0022275	3.4706	0.0032265	5.8666	0.0054539	929.6653547770205	57.717	0.023937	57.717	57.693	57.717	0	228	34	1.4837929	0.019532919	1.4837929	301.57147	0	3.9699402						34	2	2	NaN	NaN	NaN	0.84945	1	6568	6568		0	0	1	1921.8			11964	6045	6931	7077	9474	9474					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	2.0009	0.0018602	4.3255	0.0040213	6.3264	0.0058814	929.6658712814968	59.229	0.04797	59.229	59.181	59.229	0	225	49	1.4855686	0.028413057	1.4855686	301.93237	0	5.7747803						76	3	2	NaN	NaN	NaN	0.84945	1	6569	6569		0	0	1	7847.8			11965	6045	6931	7077	9475	9475					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	2.0914	0.0019443	4.8925	0.0045484	6.9838	0.0064926	929.6677166226845	57.813	0.14406	57.813	57.765	57.909	0	231	37	1.4820169	0.021311998	1.4820169	301.21054	0	4.331543						71	7	2	NaN	NaN	NaN	0.84945	1	6570	6570		0	0	1	4289.9			11966	6045	6931	7077	9476	9476					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	1.9993	0.0018587	5.9228	0.0055062	7.9221	0.0073649	929.6674379925444	59.276	0.071972	59.276	59.276	59.348	0	225	61	1.4855686	0.035520196	1.4855686	301.93237	0	7.2192383						103	4	2	NaN	NaN	NaN	0.84945	1	6571	6571		0	0	1	9870.5			11967	6045	6931	7077	9477	9477					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	1.9965	0.001856	6.0353	0.0056108	8.0318	0.0074668	929.6675779868389	58.941	0.095947	58.941	58.869	58.965	0	225	55	1.4855686	0.03196478	1.4855686	301.93237	0	6.496643						120	5	2	NaN	NaN	NaN	0.84945	1	6572	6572		0	0	1	11784			11968	6045	6931	7077	9478	9478					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	1.9942	0.0018539	6.7561	0.0062809	8.7503	0.0081348	929.6681640248795	57.957	0.16815	57.957	57.861	58.029	0	225	55	1.4855686	0.031957865	1.4855686	301.93237	0	6.4952393						150	8	2	NaN	NaN	NaN	0.84945	1	6573	6573		0	0	1	11288			11969	6045	6931	7077	9479	9479					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.6618468347001	1	929.661847	928.65457	1.9925	0.0018523	6.7636	0.0062878	8.7561	0.0081402	929.6678565570287	58.82	0.14389	58.82	58.701	58.845	0	231	58	1.4820169	0.033738732	1.4820169	301.2105	0	6.8572083						161	7	2	NaN	NaN	NaN	0.84945	1	6574	6574		0	0	1	13628			11970	6045	6931	7077	9480	9480					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.6618468347001	1	929.661847	928.65457	-0.43541	-0.00040479	8.2646	0.0076833	7.8292	0.0072785	929.6697097943136	58.53	0.096012	58.53	58.506	58.602	-0.00045776	225	49	1.4855686	0.028407097	1.4840492	301.93237	0	5.7735596						99	5	2	NaN	NaN	NaN	0.84945	1	6437	6437		0	0	1	7222.2			11971	6045	6931	7077	9481	9481					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.6618468347001	1	929.661847	928.65457	-0.53728	-0.00049949	8.8647	0.0082411	8.3274	0.0077417	929.6707037561868	59.322	0.095932	59.322	59.274	59.37	-0.00045395	222	46	1.4873441	0.026633143	1.4858247	302.2932	0	5.4129944						111	5	2	NaN	NaN	NaN	0.84945	1	6438	6438		0	0	1	9738.1			11972	6045	6931	7077	9482	9482					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.6618468347001	1	929.661847	928.65457	0.053481	4.9719E-05	8.3343	0.0077481	8.3878	0.0077978	929.6689067926463	59.538	0.047935	59.538	59.49	59.538	-0.00043869	219	40	1.4891195	0.023084521	1.4876001	302.65405	0	4.6917725						49	3	2	NaN	NaN	NaN	0.84945	1	6439	6439		0	0	1	3347.7			11973	6045	6931	7077	9483	9483					0.18738926573075787
KKKKKKAA	8	Unmodified	_KKKKKKAA_					0	0	0		ENST00000415397.6_1_7:92191598-92205104:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.6618468347001	1	929.661847	928.65457	-0.032102	-2.9844E-05	9.0943	0.0084546	9.0622	0.0084248	929.6698813391861	59.586	0.072063	59.586	59.586	59.658	-0.00043869	222	46	1.4873441	0.026633143	1.4858247	302.2932	0	5.4129944						60	4	2	NaN	NaN	NaN	0.84945	1	6440	6440		0	0	1	3710.7			11974	6045	6931	7077	9484	9484					0.18738926573075787
KKKLGKLG	8	Unmodified	_KKKLGKLG_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.30801254915013	2	436.308013	870.601472	1.269	0.00055367	1.4764	0.00064414	2.7453	0.0011978	436.30853669999016	59.085	0.14412	59.085	59.013	59.157	0	1242	34	0.87260187	0.020255327	0.87260187	355.04056	0	8.241394						104	7	2	NaN	NaN	NaN	0.84945	1	5672	5672		0	0	1	11584			11975	4070	6932	7078	9485	9485					0.1609954879044153
KKKLGKLG	8	Unmodified	_KKKLGKLG_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.30801254915013	2	436.308013	870.601472	-0.7258	-0.00031667	2.1712	0.0009473	1.4454	0.00063063	436.3087789291458	59.082	0.21616	59.082	58.938	59.154	-0.00045395	1239	40	0.87444305	0.023935497	0.8729236	355.7897	0	9.73877						151	10	3	NaN	NaN	NaN	0.84945	1	5534	5534		0	0	1	17691			11976	4070	6932	7078	9486	9486					0.1609954879044153
KKKRYVTWEH	10	Unmodified	_KKKRYVTWEH_					0	0	0			REV__ENST00000565271.1_1_17:74668237-74668399:+|nuORF	REV__ENST00000565271.1_1_17:74668237-74668399:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.8856782707	2	687.885678	1373.7568	0.27375	0.00018831	7.3226	0.0050371	7.5963	0.0052254	688.3920932783811	55.218	0.09626	55.217	55.193	55.29	-0.00061798	1077	31	0.9735726	0.018305898	0.9720532	393.86356	0	7.405731						67	5	3	NaN	NaN	NaN	0.77884	1	18907	18907		0.79988	0.20265	1	3533.3	+		11977	12798	6933	7079	9487	9487					0.08487547854019795
KKLCLCAGAKP	11	Unmodified	_KKLCLCAGAKP_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.3224793701	2	566.322479	1130.63041	1.5365	0.00087018	0.19696	0.00011154	1.7335	0.00098172	566.3226062317191	21.874	0.096365	21.86	21.836	21.932	-0.013895	1215	40	0.8891654	0.023917377	0.88764596	360.48584	0	9.696594						80	5	2	NaN	NaN	NaN	0.74155	1	13658	13658		4.7291	1.1593	1	5638.8			11978	2293	6934	7080	9488	9488					0.07031582032868755
KKLGPLCP	8	Unmodified	_KKLGPLCP_					0	0	0			REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.5120710545	1	855.512071	854.504795	0.9429	0.00080666	5.2243	0.0044695	6.1672	0.0052761	855.5160425016796	31.356	0.096537	31.356	31.332	31.428	0	444	49	1.3554435	0.028631568	1.3554435	275.83426	0	5.8265686						109	5	3	NaN	NaN	NaN	0.82332	1	5463	5463		6.0903	2.5171	1	12927	+		11979	12021	6935	7081	9489	9489					0.07172238238956652
KKLGPLCP	8	Unmodified						0	0	0			REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	855.512071	854.504795	0.9429	0.00080666	5.2243	0.0044695	6.1672	0.0052761	855.5160425016796	31.356	0.096537	31.356	31.332	31.428	0	444	49	1.3554435	0.028631568	1.3554435	275.83426		5.8265686	0.0030455	0.00022017	-0.00013497	NaN	6.0903	109	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12927	+		11980	12021	6935	7081							0.07172238238956652
KKLGPLCP	8	Unmodified						0	0	0			REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	855.512071	854.504795	0.7394	0.00063256	4.7167	0.0040352	5.4561	0.0046678	855.5162095508823	31.355	0.072361	31.35	31.326	31.398	-0.0050716	441	52	1.3572328	0.030416131	1.3557134	276.1984		6.1896973	-0.0030455	-0.0002141	0.00013497	NaN	6.0903	107	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13838	+		11981	12021	6935	7081							0.07172238238956652
KKLKDWHDKE	10	Unmodified	_KKLKDWHDKE_					0	0	0		GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.8618688234	2	663.861869	1325.70918	1.1161	0.00074091	-7.2472	-0.0048111	-6.1311	-0.0040702	663.8573168742394	38.179	0.048046	38.179	38.131	38.179	0	1209	28	0.892844	0.016551018	0.892844	361.33487	0	6.6982117						34	3	2	NaN	NaN	NaN	0.77421	1	19190	19190		1.9246	0.41924	1	1916.3			11982	7805	6936	7082	9490	9490					0.05935848863168758
KKLKDWHDKE	10	Unmodified						0	0	0		GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	GALNT10|p.T62_K70del|1|0.1|ENSG00000164574|chr5:154294835-154294861|AGAAAACGTTTTTCTTGGGAGATGGGC/-|inframe_deletion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	663.861869	1325.70918	2.8396	0.0018851	-8.2122	-0.0054518	-5.3726	-0.0035667	663.8551395432386	38.153	0.096107	38.156	38.132	38.228	0.0034256	1212	34	0.8910048	0.020226836	0.88948536	360.59055		8.185822	-0.011512	-0.00056526	-0.0016793	NaN	1.9246	47	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2752.4			11983	7805	6936	7082							0.05935848863168758
KKLMIVLFLF	10	Unmodified	_KKLMIVLFLF_					0	0	0			REV__ENST00000484368.1_1_1:172362920-172362983:-|nuORF	REV__ENST00000484368.1_1_1:172362920-172362983:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7897494646998	1	1251.78975	1250.78247	2.0545	0.0025719	-7.278	-0.0091105	-5.2234	-0.0065386	1251.7810653437675	41.281	0.072231	41.281	41.257	41.329	0	69	79	1.5776473	0.0459224	1.5776473	319.43774	0	9.298218						261	4	5	NaN	NaN	NaN	0.77884	1	17798	17798		0.79988	0.28384	1	62840	+		11984	12409	6937	7083	9491	9491					0.1671130605207054
KKMKMKKKT	9	Unmodified	_KKMKMKKKT_					0	0	0		ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8617717061001	2	575.861772	1149.70899	1.8812	0.0010833	2.0885	0.0012027	3.9697	0.002286	576.3642824539135	53.65	0.27413	53.65	53.626	53.9	0	1221	46	0.885486	0.02759999	0.885486	358.92236	0	11.187347						326	11	5	NaN	NaN	NaN	0.66529	1	14807	14807		2.1763	0	1	75467			11985	7560	6938	7084	9492	9492					0.140124343379739
KKMKMKKKT	9	Unmodified	_KKMKMKKKT_					0	0	0		ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	ENST00000553612.5_1_14:81651936-81658969:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8617717061001	2	575.861772	1149.70899	-0.42693	-0.00024586	5.0719	0.0029207	4.6449	0.0026748	575.8646017532544	53.672	0.27411	53.671	53.623	53.897	-0.00059128	1218	46	0.8873258	0.02759695	0.8858064	359.6681	0	11.186127						310	11	3	NaN	NaN	NaN	0.68136	1	14301	14301		0.79988	0	1	83598			11986	7560	6938	7084	9493	9493					0.140124343379739
KKNFDHVI	8	Unmodified	_KKNFDHVI_					0	0	0			REV__ENSG00000136156|ENST00000647800|ITM2B	REV__ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.78235890465004	2	500.782359	999.550165	1.287	0.0006445	-11.117	-0.0055674	-9.8304	-0.0049229	500.77630930935965	24.43	0.072363	24.43	24.43	24.502	0	1299	43	0.8375814	0.025833845	0.8375814	340.1086	0	10.490112						72	4	3	NaN	NaN	NaN	0.75561	1	8576	8576		15.175	2.1725	1	7063.3	+		11987	9651	6939	7085	9494	9494					0.050371800257153154
KKNFDHVI	8	Unmodified						0	0	0			REV__ENSG00000136156|ENST00000647800|ITM2B	REV__ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.782359	999.550165	1.287	0.0006445	-11.117	-0.0055674	-9.8304	-0.0049229	500.77630930935965	24.43	0.072363	24.43	24.43	24.502	0	1299	43	0.8375814	0.025833845	0.8375814	340.1086		10.490112	-0.0055695	-0.00048999	0.00075972	NaN	15.175	72	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7063.3	+		11988	9651	6939	7085							0.050371800257153154
KKNFDHVI	8	Unmodified						0	0	0			REV__ENSG00000136156|ENST00000647800|ITM2B	REV__ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.782359	999.550165	1.457	0.00072966	-9.3101	-0.0046623	-7.8531	-0.0039327	500.77652006998767	24.454	0.048262	24.441	24.441	24.489	-0.012749	1299	37	0.8375814	0.02214086	0.83606195	340.10858		8.99057	0.0055695	0.0013202	-0.00075972	NaN	15.175	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5474.9	+		11989	9651	6939	7085							0.050371800257153154
KKPIPKTRG	9	Unmodified	_KKPIPKTRG_					0	0	0			REV__ENST00000559475.5_1_15:40329218-40331146:-|nuORF	REV__ENST00000559475.5_1_15:40329218-40331146:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.8349257914001	2	512.834926	1023.6553	1.9564	0.0010033	7.0364	0.0036085	8.9928	0.0046118	512.8386014532018	55.701	0.096409	55.701	55.677	55.773	0	1224	34	0.883646	0.02023995	0.883646	358.69876	0	8.216003						74	5	3	NaN	NaN	NaN	0.67989	1	9537	9537		0.92586	0	1	9392.8	+		11990	9791	6940	7086	9495	9495					0.14441721222135584
KKPSRSCKRK	10	Unmodified	_KKPSRSCKRK_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.36659844805	2	609.366598	1216.71864	0.48114	0.00029319	7.18	0.0043752	7.6611	0.0046684	609.3712293820187	39.694	0.217	39.694	39.694	39.911	0	1185	85	0.90755045	0.051472604	0.90755045	367.62573	0	20.85025						390	10	4	NaN	NaN	NaN	0.65442	1	16912	16912		11.17	5.4762	1	63830	+		11991	10629	6941	7087	9496	9496					0.11895338667704891
KKPSRSCKRK	10	Unmodified						0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.366598	1216.71864	0.48114	0.00029319	7.18	0.0043752	7.6611	0.0046684	609.3712293820187	39.694	0.217	39.694	39.694	39.911	0	1185	85	0.90755045	0.051472604	0.90755045	367.62573		20.85025	0.010428	-0.00012312	-0.0019961	NaN	11.17	390	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63830	+		11992	10629	6941	7087							0.11895338667704891
KKPSRSCKRK	10	Unmodified						0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.366598	1216.71864	0.84994	0.00051793	7.388	0.004502	8.2379	0.0050199	609.3710703293309	39.668	0.12057	39.673	39.673	39.794	0.0053368	1176	100	0.9130621	0.060654342	0.91154265	369.85834		24.56955	-0.010428	0.00013038	0.0019961	NaN	11.17	321	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86940	+		11993	10629	6941	7087							0.11895338667704891
KKQLSDLHFY	10	Unmodified	_KKQLSDLHFY_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.8995504508333	3	426.89955	1277.67682	1.6116	0.00068797	-10.743	-0.0045861	-9.1312	-0.0038981	426.8949683000999	22.332	0.28918	22.332	22.284	22.573	0	1455	43	0.7413668	0.025974154	0.7413668	450.21857	0	15.773651						320	13	4	NaN	NaN	NaN	0.507	1	18375	18375		11.561	7.018	1	68988	+		11994	10871	6942	7088	9497	9497					0.0490906146017096
KKQLSDLHFY	10	Unmodified	_KKQLSDLHFY_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.8995504508333	3	426.89955	1277.67682	1.0997	0.00046946	-9.1889	-0.0039228	-8.0893	-0.0034533	426.8955400185649	22.717	0.53037	22.704	22.535	23.065	-0.01354	1452	43	0.74322224	0.025971413	0.7417028	451.3453	0	15.771942						412	23	3	NaN	NaN	NaN	0.65442	1	17554	17554		8.9416	3.2444	1	61296	+		11995	10871	6942	7088	9498	9498					0.0490906146017096
KKQLSDLHFY	10	Unmodified						0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	426.89955	1277.67682	1.6116	0.00068797	-10.743	-0.0045861	-9.1312	-0.0038981	426.8949683000999	22.332	0.28918	22.332	22.284	22.573	0	1455	43	0.7413668	0.025974154	0.7413668	450.21857		15.773651	-0.18578	-0.00090199	-0.00016798	NaN	11.561	320	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68988	+		11996	10871	6942	7088							0.0490906146017096
KKQLSDLHFY	10	Unmodified						0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	426.89955	1277.67682	1.0997	0.00046946	-9.1889	-0.0039228	-8.0893	-0.0034533	426.8955400185649	22.717	0.53037	22.704	22.535	23.065	-0.01354	1452	43	0.74322224	0.025971413	0.7417028	451.3453		15.771942	0.18578	0.001088	0.00016798	NaN	11.561	412	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61296	+		11997	10871	6942	7088							0.0490906146017096
KKQSGGAG	8	Unmodified	_KKQSGGAG_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1;tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3998780682002	1	732.399878	731.392602	1.9824	0.0014519	-6.6773	-0.0048904	-4.6949	-0.0034385	732.3953616757823	26.119	0.14483	26.119	26.07	26.215	0	576	97	1.2765218	0.057569385	1.2765218	260.465	0	11.746613						312	7	4	NaN	NaN	NaN	0.83211	1	3772	3772		4.9097	0.49665	1	51341			11998	7980	6943	7089	9499	9499					0.016161004863420203
KKSIAAGP	8	Unmodified	_KKSIAAGP_					0	0	0			REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4723147298001	1	771.472315	770.465038	0.20497	0.00015813	-7.3189	-0.0056463	-7.1139	-0.0054882	771.466826362565	54.882	0.072052	54.881	54.881	54.953	-0.00061798	462	43	1.3447032	0.02506864	1.3431838	274.12085	0	5.1102905						59	4	2	NaN	NaN	NaN	0.84876	1	4291	4291		0.39566	0	1	4880.9	+		11999	11051	6944	7090	9500	9500					0.0706243455990716
KKSIAAGP	8	Unmodified						0	0	0			REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	771.472315	770.465038	1.8809	0.0014511	-10.553	-0.0081416	-8.6725	-0.0066906	771.4643412262916	54.908	0.07201	54.908	54.86	54.932	0	468	34	1.3411216	0.019699931	1.3411216	273.39075		4.015869	0.013224	-0.001205	-0.0010311	NaN	0.39566	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4046	+		12000	11051	6944	7090							0.0706243455990716
KKSIAAGP	8	Unmodified						0	0	0			REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	771.472315	770.465038	0.20497	0.00015813	-7.3189	-0.0056463	-7.1139	-0.0054882	771.466826362565	54.882	0.072052	54.881	54.881	54.953	-0.00061798	462	43	1.3447032	0.02506864	1.3431838	274.12085		5.1102905	-0.013224	0.0012903	0.0010311	NaN	0.39566	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4880.9	+		12001	11051	6944	7090							0.0706243455990716
KKTAAKSA	8	Unmodified	_KKTAAKSA_					0	0	0			REV__ENST00000503853.1_1_5:176733373-176733568:+|nuORF	REV__ENST00000503853.1_1_5:176733373-176733568:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4937784534001	1	804.493778	803.486502	2.1525	0.0017317	-11.076	-0.0089107	-8.9237	-0.0071791	804.4849963716262	36.035	0.072266	36.036	36.036	36.108	0.0011024	447	37	1.3536539	0.02147603	1.3521345	275.74698	0	4.3747864						53	4	2	NaN	NaN	NaN	0.84512	1	4698	4698		2.4615	1.2197	1	3413.2	+		12002	12528	6945	7091	9501	9501					0.0768981958860877
KKTLITPG	8	Unmodified	_KKTLITPG_					0	0	0		ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.5454796729	1	857.54548	856.538203	1.9233	0.0016493	-3.79	-0.0032501	-1.8667	-0.0016008	857.5427375535368	57.549	0.047966	57.549	57.549	57.597	0	261	79	1.4642475	0.046249866	1.4642475	297.96484	0	9.41156						139	3	3	NaN	NaN	NaN	0.84692	1	5498	5498		1.4396	0	1	18080			12003	914	6946	7092	9502	9502					0.10419563282505351
KKVDKKLKFI	10	Unmodified	_KKVDKKLKFI_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8245550666002	1	1246.82456	1245.81728	1.2797	0.0015955	2.3504	0.0029306	3.6301	0.0045261	1247.828790120452	41.376	0.096325	41.384	41.384	41.481	0.0082588	60	46	1.582944	0.026483893	1.5814246	320.52414	0	5.36261						92	5	2	NaN	NaN	NaN	0.77594	1	16932	16932		1.5054	0.81425	1	8192.9	+		12004	13395	6947	7093	9503	9503					0.2042026518442981
KKVFKILL	8	Unmodified	_KKVFKILL_					0	0	0		ENST00000227758.6_3_11:102248859-102248973:+|nuORF	ENST00000227758.6_3_11:102248859-102248973:+|nuORF	ENST00000227758.6_3_11:102248859-102248973:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.84951322310013	2	494.849513	987.684474	1.7252	0.00085371	3.3764	0.0016708	5.1016	0.0025245	494.851037420996	55.725	0.072357	55.725	55.701	55.773	0	1218	31	0.8873258	0.018396974	0.8873258	360.36652	0	7.4714966						60	4	2	NaN	NaN	NaN	0.84945	1	8150	8150		0	0	1	7720.4			12005	6242	6948	7094	9504	9504					0.1901386551843416
KKVKGSRI	8	Unmodified	_KKVKGSRI_					0	0	0		nc|ENSG00000161180|Q8IYX3-1|CCDC116;ENSG00000161180|ENST00000292779|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.30854386540005	2	458.308544	914.602535	1.2035	0.00055156	-0.037282	-1.7087E-05	1.1662	0.00053447	458.30862620973875	55.701	0.12043	55.701	55.677	55.797	0	1287	58	0.8449601	0.035039425	0.8449601	343.53705	0	14.246033						262	6	5	NaN	NaN	NaN	0.84727	1	6317	6317		1.2418	0	1	47616			12006	4093	6949	7095	9505	9505					0.1418176315931987
KKVKMPADSFK	11	Unmodified	_KKVKMPADSFK_					0	0	0			REV__ENSG00000085741|ENST00000322563|WNT11	REV__ENSG00000085741|ENST00000322563|WNT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.8655656053	2	639.865566	1277.71658	2.0118	0.0012873	-8.0019	-0.0051201	-5.9901	-0.0038328	640.3620847313671	39.668	0.28918	39.673	39.601	39.89	0.0053368	1176	100	0.9130621	0.060673952	0.91154265	369.6603	0	24.564362						609	13	3	NaN	NaN	NaN	0.74794	1	17559	17559		4.3102	0.74037	1	246790	+		12007	8686	6950	7096	9506	9506					0.08882865139230489
KKVKMPADSFK	11	Unmodified						0	0	0			REV__ENSG00000085741|ENST00000322563|WNT11	REV__ENSG00000085741|ENST00000322563|WNT11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.865566	1277.71658	1.4347	0.000918	-8.508	-0.005444	-7.0733	-0.004526	639.8606209764894	39.694	0.45746	39.694	39.646	40.104	0	1179	97	0.9112251	0.058838546	0.9112251	368.91656		23.821259	0.010428	-0.00028377	-0.00015879	NaN	4.3102	1261	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374890	+		12008	8686	6950	7096							0.08882865139230489
KKVKMPADSFK	11	Unmodified						0	0	0			REV__ENSG00000085741|ENST00000322563|WNT11	REV__ENSG00000085741|ENST00000322563|WNT11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	639.865566	1277.71658	2.0118	0.0012873	-8.0019	-0.0051201	-5.9901	-0.0038328	640.3620847313671	39.668	0.28918	39.673	39.601	39.89	0.0053368	1176	100	0.9130621	0.060673952	0.91154265	369.6603		24.564362	-0.010428	0.00036396	0.00015879	NaN	4.3102	609	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246790	+		12009	8686	6950	7096							0.08882865139230489
KKVLVPPG	8	Unmodified	_KKVLVPPG_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.5556504287001	1	837.55565	836.548374	1.906	0.0015964	1.252	0.0010486	3.158	0.002645	837.5563952345663	59.085	0.16808	59.085	59.013	59.181	0	369	64	1.4001206	0.037477016	1.4001206	285.02298	0	7.6292114						308	8	3	NaN	NaN	NaN	0.84876	1	5228	5228		0.39566	0.39566	1	52724	+		12010	10569	6951	7097	9507	9507					0.12356171007752437
KKVLVPPG	8	Unmodified						0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	837.55565	836.548374	1.906	0.0015964	1.252	0.0010486	3.158	0.002645	837.5563952345663	59.085	0.16808	59.085	59.013	59.181	0	369	64	1.4001206	0.037477016	1.4001206	285.02298		7.6292114	0.0013485	-0.00063607	-0.0010248	NaN	0.39566	308	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52724	+		12011	10569	6951	7097							0.12356171007752437
KKVPGVGG	8	Unmodified	_KKVPGVGG_					0	0	0		ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENST00000526477.5_1_11:34073295-34074390:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4617500435003	1	741.46175	740.454474	1.686	0.0012501	8.1862	0.0060698	9.8723	0.0073199	741.4668356444856	58.005	0.024036	58.005	57.981	58.005	0	621	43	1.2495319	0.025208116	1.2495319	254.90042	0	5.1423798						43	2	2	NaN	NaN	NaN	0.84945	1	3924	3924		0	0	1	3871.6			12012	7428	6952	7098	9508	9508					0.07386451905483682
KKVSGVGK	8	Unmodified	_KKVSGVGK_					0	0	0		nc|ENSG00000095397|Q9P202-2|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.5145138955003	1	802.514514	801.507237	2.0714	0.0016623	-0.43398	-0.00034827	1.6374	0.0013141	802.5147277568195	56.205	0.11988	56.205	56.133	56.253	0	456	37	1.348284	0.021482825	1.348284	274.66446	0	4.376343						74	6	2	NaN	NaN	NaN	0.84945	1	4768	4768		0	0	1	4453			12013	7917	6953	7099	9509	9509					0.09854409968295386
KKWPDLEP	8	Unmodified	_KKWPDLEP_					0	0	0		DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5462079544	1	1012.54621	1011.53893	2.0861	0.0021123	3.521	0.0035651	5.6071	0.0056774	1012.5499824502551	25.395	0.072414	25.395	25.371	25.443	0	192	85	1.5050892	0.04969132	1.5050892	305.53336	0	10.087341						125	4	2	NaN	NaN	NaN	0.77489	1	9050	9050		12.588	1.0394	1	11246			12014	263	6954	7100	9510	9510					0.03362357931553106
KKYKQHQPTDM	11	Unmodified	_KKYKQHQPTDM_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3586360301999	2	702.358636	1402.70272	1.0166	0.00071402	-10.199	-0.0071637	-9.1828	-0.0064496	702.3519940869965	21.151	0.04818	21.151	21.127	21.175	0	1083	40	0.9699114	0.023798943	0.9699114	392.30182	0	9.626007						71	3	3	NaN	NaN	NaN	0.76654	1	20087	20087		2.5994	0.70933	1	4396.2			12015	1463	6955	7101	9511	9511					0.01747587640124948
KKYMNSFLI	9	Unmodified	_KKYMNSFLI_					0	0	0		FADS1|p.L145F|1|0.18|ENSG00000149485|chr11:61813296-61813296|G/A|missense_variant	FADS1|p.L145F|1|0.18|ENSG00000149485|chr11:61813296-61813296|G/A|missense_variant	FADS1|p.L145F|1|0.18|ENSG00000149485|chr11:61813296-61813296|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3151772667501	2	572.315177	1142.6158	1.4278	0.00081715	-5.4396	-0.0031132	-4.0118	-0.002296	572.3115221205462	32.587	0.21717	32.587	32.49	32.707	0	1179	61	0.9112251	0.036750257	0.9112251	369.38263	0	14.8974						240	10	3	NaN	NaN	NaN	0.1507	1	14557	14557		32.453	6.3378	1	35760			12016	7796	6956	7102	9512	9512					0.05019833156393361
KLAGCGGT	8	Unmodified	_KLAGCGGT_					0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615	1	706.355236	705.34796	0.97707	0.00069016	4.421	0.0031228	5.3981	0.003813	706.3580080098043	29.112	0.1448	29.112	29.063	29.208	0	744	64	1.1755381	0.037976384	1.1755381	240.0228	0	7.754074						148	7	2	NaN	NaN	NaN	0.84727	1	3317	3317		1.2418	0.84618	1	11160			12017	7781	6957	7103	9513	9513					-0.016500466513662104
KLAGCGGT	8	Unmodified						0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	706.355236	705.34796	0.80095	0.00056575	3.6208	0.0025576	4.4218	0.0031233	706.3580734473182	29.304	0.12064	29.296	29.224	29.344	-0.0077229	717	76	1.1918083	0.04519558	1.1902889	243.34491		9.228058	0.092278	-0.00020148	0.0073755	NaN	1.2418	203	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18311			12018	7781	6957	7103							-0.016500466513662104
KLASRILSKLT	11	Unmodified	_KLASRILSKLT_					0	0	0		ENST00000543099.1_1_12:24970944-24983172:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000543099.1_1_12:24970944-24983172:-|nuORF	ENST00000543099.1_1_12:24970944-24983172:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.7939832197	1	1229.79398	1228.78671	1.0956	0.0013474	4.9237	0.0060551	6.0193	0.0074025	1229.7998822616978	41.472	0.024052	41.481	41.481	41.505	0.0082588	60	70	1.582944	0.040617228	1.5814246	320.5729	0	8.2256775						151	2	4	NaN	NaN	NaN	0.77613	1	16519	16519		0.9188	0.11892	1	19258			12019	643	6958	7104	9514	9514					0.1814648679937818
KLASRILSKLT	11	Unmodified						0	0	0		ENST00000543099.1_1_12:24970944-24983172:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000543099.1_1_12:24970944-24983172:-|nuORF	ENST00000543099.1_1_12:24970944-24983172:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1229.79398	1228.78671	1.9308	0.0023745	4.4335	0.0054523	6.3643	0.0078268	1229.7999234844901	41.426	0.072227	41.426	41.377	41.45	0	57	73	1.5847093	0.0423764	1.5847093	320.9304		8.58194	-0.02749	-0.00023737	0.0016423	NaN	0.9188	152	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17163			12020	643	6958	7104							0.1814648679937818
KLEEDKKM	8	Unmodified	_KLEEDKKM_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF;ENST00000435913.1_1:143194333-143196710:-|nuORF;ENST00000421640.1_1:143391618-143393999:+|nuORF;ENST00000413897.2_1:143195830-143196710:-|nuORF;ENST00000448844.1_1:143391618-143392505:+|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.77334224180004	2	510.773342	1019.53213	1.9152	0.00097823	6.3425	0.0032396	8.2577	0.0042178	511.27827979042814	54.884	0.095959	54.884	54.884	54.98	0	1329	37	0.81912065	0.022167265	0.81912065	332.52383	0	8.99884						117	5	4	NaN	NaN	NaN	0.83211	1	9350	9350		4.9097	0	1	7703.1			12021	7012	6959	7105	9515	9515					0.023146769886920993
KLFGAAEVQRF	11	Unmodified	_KLFGAAEVQRF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.5715452559	3	422.571545	1264.69281	1.4566	0.00061553	-1.3011	-0.00054982	0.15551	6.5712E-05	422.5708843768992	20.189	0.072109	20.189	20.165	20.237	0	1446	37	0.7469324	0.022258759	0.7469324	453.64813	0	13.518829						65	4	2	NaN	NaN	NaN	0.74438	1	18101	18101		4.5433	0.96389	1	6624.3			12022	5722	6960	7106	9516	9516					0.07104767697069292
KLFGAPEPS	9	Unmodified	_KLFGAPEPS_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.25564262765	2	473.255643	944.496732	1.5959	0.00075527	-0.89288	-0.00042256	0.70303	0.00033271	473.25548644624115	21.97	0.072239	21.97	21.946	22.019	0	1341	28	0.8117308	0.016629934	0.8117308	329.87234	0	6.7581177						48	4	2	NaN	NaN	NaN	0.62619	1	6934	6934		4.4131	0.44458	1	3647.6			12023	3876	6961	7107	9517	9517					0.022263825231902956
KLFGPFTRNYY	11	Unmodified	_KLFGPFTRNYY_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3667870258001	2	703.366787	1404.71902	1.3818	0.0009719	-2.291	-0.0016114	-0.90926	-0.00063954	703.3655542681885	22.019	0.096344	22.019	21.97	22.067	0	1041	28	0.9955231	0.0164513	0.9955231	402.65533	0	6.6539917						64	5	2	NaN	NaN	NaN	0.67738	1	20104	20104		8.9416	5.0135	1	4373.4			12024	576	6962	7108	9518	9518					0.032850368685785725
KLFGPFTRNYY	11	Unmodified	_KLFGPFTRNYY_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3667870258001	2	703.366787	1404.71902	1.3644	0.00095968	-0.7847	-0.00055193	0.57971	0.00040775	703.8674774449984	22.284	0.14458	22.27	22.222	22.366	-0.013731	1038	25	0.997351	0.014624178	0.9958316	403.39465	0	5.914978						58	7	2	NaN	NaN	NaN	0.59348	1	19155	19155		14.45	8.9996	1	4062			12025	576	6962	7108	9519	9519					0.032850368685785725
KLFIGGLSF	9	Unmodified	_KLFIGGLSF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3;AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;ENSG00000139675|ENST00000357495|HNRNPA1L2	ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000139675|ENST00000357495|HNRNPA1L2	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.2920281339501	2	491.292028	980.569503	1.8884	0.00092776	-0.85657	-0.00042083	1.0318	0.00050694	491.2916622403678	29.208	0.31371	29.208	29.16	29.474	0	1269	91	0.8560222	0.055304408	0.8560222	347.68796	0	22.46283						606	14	5	NaN	NaN	NaN	0.021751	1	7907	7907		69.782	19.949	1	297410			12026	2329;3232	6963	7109	9520	9520					0.07844136316634831
KLFIGGLSF	9	Unmodified	_KLFIGGLSF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000170144|ENST00000392524|HNRNPA3;AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion;ENSG00000139675|ENST00000357495|HNRNPA1L2	ENSG00000122566|ENST00000618183|HNRNPA2B1;ENSG00000139675|ENST00000357495|HNRNPA1L2	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.2920281339501	2	491.292028	980.569503	1.144	0.00056203	-1.1861	-0.00058274	-0.042161	-2.0713E-05	491.291330611553	29.231	0.33786	29.224	29.127	29.465	-0.0077209	1269	82	0.8560222	0.04977131	0.85450274	347.68796	0	20.215454						689	15	4	NaN	NaN	NaN	0.055351	1	7738	7738		44.638	3.1784	1	310460			12027	2329;3232	6963	7109	9521	9521					0.07844136316634831
KLFIKFAA	8	Unmodified	_KLFIKFAA_					0	0	0			REV__SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	REV__SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.29711351185	2	469.297114	936.579674	-0.95647	-0.00044887	-3.1047	-0.001457	-4.0612	-0.0019059	469.2954404939786	55.867	0.047943	55.866	55.842	55.89	-0.00059128	1191	31	0.90387505	0.01838106	0.9023556	367.3626	0	7.470642						46	3	2	NaN	NaN	NaN	0.84876	1	6617	6617		0.39566	0	1	4477.7	+		12028	10039	6964	7110	9522	9522					0.10884744041845806
KLFLAPLF	8	Unmodified	_KLFLAPLF_					0	0	0			REV__TTC21A|p.V218F|1|0.06|ENSG00000168026|chr3:39114678-39114678|G/T|missense_variant	REV__TTC21A|p.V218F|1|0.06|ENSG00000168026|chr3:39114678-39114678|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.7994890253	2	474.799489	947.584425	0.54868	0.00026051	-1.4444	-0.0006858	-0.89571	-0.00042528	474.7986782867014	33.02	0.217	33.018	32.945	33.162	-0.0024796	1314	64	0.8283535	0.038761258	0.8268341	336.61182	0	15.751129						405	10	3	NaN	NaN	NaN	0.59262	1	6907	6907		25.752	0	1	101240	+		12029	13643	6965	7111	9523	9523					0.10853628184599984
KLFQEHPI	8	Unmodified	_KLFQEHPI_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.28473441809996	2	506.284734	1010.55492	1.8659	0.00094466	-1.0133	-0.00051303	0.85254	0.00043163	506.28280447035513	19.948	0.12029	19.948	19.9	20.021	0	1287	91	0.8449601	0.05534035	0.8449601	343.05402	0	22.4682						239	6	3	NaN	NaN	NaN	0.77891	1	9007	9007		12.049	0	1	21221			12030	2917	6966	7112	9524	9524					0.05006064168458124
KLFVGGLSF	9	Unmodified	_KLFVGGLSF_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.28420310185004	2	484.284203	966.553853	1.4108	0.00068321	-2.4222	-0.001173	-1.0114	-0.00048982	484.2829537888643	27.711	0.096502	27.702	27.677	27.774	-0.009552	1281	70	0.84864825	0.042416096	0.8471288	344.76205	0	17.231476						161	5	3	NaN	NaN	NaN	0.33629	1	7382	7382		16.584	0.16752	1	18292			12031	1157	6967	7113	9525	9525					0.06923849799568416
KLFYLYER	8	Unmodified	_KLFYLYER_					0	0	0			REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.87808672723327	3	377.878087	1130.61243	1.512	0.00057136	-1.7408	-0.00065782	-0.2288	-8.6459E-05	377.87687378748666	23.899	0.072319	23.899	23.875	23.947	0	1449	34	0.74507743	0.020404935	0.74507743	453.0997	0	12.408752						82	4	3	NaN	NaN	NaN	0.83211	1	14113	14113		5.6942	3.0947	1	8087.6	+	+	12032	8284	6968	7114	9526	9526					0.05234906374016646
KLHFPDASN	9	Unmodified	_KLHFPDASN_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5159704584999	1	1028.51597	1027.50869	1.9262	0.0019811	0.97848	0.0010064	2.9047	0.0029875	1029.517054768354	55.196	0.09626	55.196	55.172	55.268	0	102	58	1.5582114	0.033588886	1.5582114	316.25107	0	6.8171387						110	5	2	NaN	NaN	NaN	0.63698	1	9666	9666		3.9685	0.7569	1	7277.4	+		12033	13236	6969	7115	9527	9527					-0.003960007336445415
KLHFPDASN	9	Unmodified						0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.51597	1027.50869	1.9262	0.0019811	0.97848	0.0010064	2.9047	0.0029875	1029.517054768354	55.196	0.09626	55.196	55.172	55.268	0	102	58	1.5582114	0.033588886	1.5582114	316.25107		6.8171387	-0.010657	-0.0010623	-0.0018918	NaN	3.9685	110	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7277.4	+		12034	13236	6969	7115							-0.003960007336445415
KLHFPDASN	9	Unmodified						0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1028.51597	1027.50869	-0.17601	-0.00018103	2.702	0.0027791	2.526	0.0025981	1029.5202324502561	55.218	0.072227	55.217	55.193	55.266	-0.00061798	93	61	1.5635144	0.035343528	1.5619949	317.32733		7.1732483	0.010657	0.00071046	0.0018918	NaN	3.9685	100	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6962.4	+		12035	13236	6969	7115							-0.003960007336445415
KLHQVNRPL	9	Unmodified	_KLHQVNRPL_					0	0	0		nc|ENSG00000102145|P15976-3|GATA1;ENSG00000102145|ENST00000376670|GATA1	nc|ENSG00000102145|P15976-3|GATA1	nc|ENSG00000102145|P15976-3|GATA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8354571076501	2	552.835457	1103.65636	1.0396	0.00057473	-7.8052	-0.004315	-6.7656	-0.0037402	552.8313550348163	20.453	0.12015	20.453	20.429	20.549	0	1251	70	0.8670771	0.042338252	0.8670771	351.6343	0	17.16983						126	6	3	NaN	NaN	NaN	0.45297	1	13011	13011		11.548	0	1	12862			12036	1365	6970	7116	9528	9528					0.10867935591022615
KLIRKKKRYRI	11	Unmodified	_KLIRKKKRYRI_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1502.0165467875001	1	1502.01655	1501.00927	3.751	0.0056341	-0.7706	-0.0011575	2.9804	0.0044766	1502.0154295863617	53.674	0.2019	53.674	53.626	53.828	0	81	1246	1.5705823	0.7483322	1.5705823	317.42688	0	151.24376						8854	8	3	NaN	NaN	NaN	0.78138	1	20587	20587		0	0	1	8166800	+		12037	8640	6971	7117	9529	9529					0.27880605655263935
KLIRKKKRYRI	11	Unmodified	_KLIRKKKRYRI_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1502.0165467875001	1	1502.01655	1501.00927	1.4106	0.0021187	2.0325	0.0030528	3.4431	0.0051715	1502.0194204363033	53.672	0.17788	53.671	53.647	53.825	-0.00059128	78	1192	1.5723488	0.71517825	1.5708294	317.7839	0	144.54309						7492	7	3	NaN	NaN	NaN	0.78138	1	19570	19570		0	0	1	7846700	+		12038	8640	6971	7117	9530	9530					0.27880605655263935
KLIRKKKRYRI	11	Unmodified						0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1502.01655	1501.00927	3.751	0.0056341	-0.7706	-0.0011575	2.9804	0.0044766	1502.0154295863617	53.674	0.2019	53.674	53.626	53.828	0	81	1246	1.5705823	0.7483322	1.5705823	317.42688		151.24376	0.0012072	-0.0016976	-0.00012354	NaN	0	8854	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8166800	+		12039	8640	6971	7117							0.27880605655263935
KLIRKKKRYRI	11	Unmodified						0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1502.01655	1501.00927	1.4106	0.0021187	2.0325	0.0030528	3.4431	0.0051715	1502.0194204363033	53.672	0.17788	53.671	53.647	53.825	-0.00059128	78	1192	1.5723488	0.71517825	1.5708294	317.7839		144.54309	-0.0012072	0.0025127	0.00012354	NaN	0	7492	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7846700	+		12040	8640	6971	7117							0.27880605655263935
KLKAACAA	8	Unmodified	_KLKAACAA_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.4494707976999	1	775.449471	774.442194	2.3184	0.0017978	-3.4016	-0.0026378	-1.0832	-0.00083995	775.447137858003	25.756	0.1931	25.745	25.696	25.89	-0.0116	1266	124	0.85786515	0.07556236	0.8563457	174.86206	0	15.402176						426	9	3	NaN	NaN	NaN	0.84945	1	4349	4349		0	0	1	69377	+		12041	13255	6972	7118	9531	9531					0.04595092170757198
KLKFRRKRFWV	11	Unmodified	_KLKFRRKRFWV_					0	0	0			REV__ARGFX|p.N128K|1|0.12|ENSG00000186103|chr3:121586036-121586036|C/A|missense_variant	REV__ARGFX|p.N128K|1|0.12|ENSG00000186103|chr3:121586036-121586036|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1563.9746819727998	1	1563.97468	1562.96741	2.0177	0.0031556	-10.584	-0.016553	-8.566	-0.013397	1564.9609236026677	39.668	0.40971	39.673	39.649	40.059	0.0053368	360	148	1.405474	0.08740914	1.4039545	283.9542	0	17.659668						917	18	2	NaN	NaN	NaN	0.78074	1	19690	19690		0.11306	0	1	448140	+		12042	8137	6973	7119	9532	9532					0.2084404996669491
KLKSCTKTKK	10	Unmodified	_KLKSCTKTKK_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.86028326215	2	582.860283	1163.70601	0.70457	0.00041066	-2.6258	-0.0015305	-1.9212	-0.0011198	582.8587076487552	53.672	0.3221	53.671	53.623	53.945	-0.00059128	1146	133	0.93142134	0.080833256	0.9299019	377.48798	0	32.760223						1108	13	8	NaN	NaN	NaN	0.76892	1	14756	14756		3.2116	1.0353	1	1494700	+		12043	10762	6974	7120	9533	9533					0.1307088248479431
KLLAHQKP	8	Unmodified	_KLLAHQKP_					0	0	0		ENST00000498841.5_1_21:45739892-45744801:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF;ENST00000474114.5_1_21:45739892-45740171:+|nuORF	ENST00000498841.5_1_21:45739892-45744801:+|nuORF	ENST00000498841.5_1_21:45739892-45744801:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5832621627001	1	934.583262	933.575986	1.8026	0.0016847	-0.69611	-0.00065058	1.1065	0.0010341	934.5830842498845	39.668	0.60201	39.673	39.673	40.275	0.0053368	888	127	1.088497	0.076357245	1.0869776	221.21309	0	15.517914						769	26	2	NaN	NaN	NaN	0.84727	1	6564	6564		1.2418	0	1	290600			12044	3348	6975	7121	9534	9534					0.10654074267984015
KLLEIWIEFG	10	Unmodified	_KLLEIWIEFG_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF	nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001-14|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.35535667225	2	624.355357	1246.69616	0.13868	8.6584E-05	-0.84456	-0.0005273	-0.70588	-0.00044072	624.3541703567147	42.912	0.19176	42.922	42.874	43.066	0.010418	1239	61	0.87444305	0.03682977	0.8729236	354.11923	0	14.914764						307	9	3	NaN	NaN	NaN	0.73444	1	16957	16957		5.6942	0.50528	1	35183			12045	3759	6976	7122	9535	9535					0.08268017751061052
KLLIEKDLF	9	Unmodified	_KLLIEKDLF_					0	0	0			REV__PCDHB2|p.P133T|1|0.42|ENSG00000112852|chr5:141095187-141095187|C/A|missense_variant	REV__PCDHB2|p.P133T|1|0.42|ENSG00000112852|chr5:141095187-141095187|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.6819731542998	1	1118.68197	1117.6747	0.064298	7.1929E-05	6.7546	0.0075563	6.8189	0.0076282	1118.689686245206	45.812	0.21584	45.823	45.751	45.967	0.010719	180	49	1.5121819	0.028365016	1.5106624	306.5809	0	5.7507324						232	10	3	NaN	NaN	NaN	0.66822	1	13193	13193		1.9246	0	1	20534	+		12046	9132	6977	7123	9536	9536					0.12056632722351424
KLLSSAYKRAE	11	Unmodified	_KLLSSAYKRAE_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.36424433685	2	633.364244	1264.71394	0.78728	0.00049864	6.0575	0.0038366	6.8447	0.0043352	633.3679169848149	32.079	0.24131	32.075	31.954	32.196	-0.0037613	1032	67	1.0010062	0.04019493	0.99948686	405.3097	0	16.275024						269	11	3	NaN	NaN	NaN	0.77918	1	17308	17308		0.38509	0.15496	1	19355	+		12047	9012	6978	7124	9537	9537					0.0921673300592829
KLLWYLRHAV	10	Unmodified	_KLLWYLRHAV_					0	0	0			REV__PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	REV__PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.59591371043336	3	433.595914	1297.76591	1.2734	0.00055214	7.7405	0.0033562	9.0139	0.0039084	433.9333884501675	21.44	0.048241	21.44	21.416	21.464	0	1446	34	0.7469324	0.02040279	0.7469324	453.52338	0	12.388153						45	3	2	NaN	NaN	NaN	0.76991	1	18743	18743		2.9701	1.868	1	4255	+		12048	9752	6979	7125	9538	9538					0.12893941210381854
KLMKESSIGYT	11	Unmodified	_KLMKESSIGYT_					0	0	0			REV__ENSG00000213341|ENST00000370397|CHUK	REV__ENSG00000213341|ENST00000370397|CHUK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.55668444683334	3	419.556684	1255.64822	1.6004	0.00067148	-4.3585	-0.0018286	-2.758	-0.0011572	419.55475370677715	17.666	0.31182	17.652	17.364	17.676	-0.013786	1425	76	0.7599118	0.046364903	0.75839233	461.567	0	28.161804						584	14	4	NaN	NaN	NaN	0.66717	1	17141	17141		4.5433	0	1	87699	+		12049	11282	6980	7126	9539	9539					0.030625757687403166
KLNETGFYSGK	11	Unmodified	_KLNETGFYSGK_					0	0	0			REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.2154271436666	3	415.215427	1242.62445	1.954	0.00081134	-8.4971	-0.0035281	-6.5431	-0.0027168	415.21208424223636	18.82	0.048075	18.82	18.796	18.844	0	1482	31	0.72465914	0.018573165	0.72465914	440.2048	0	11.282532						69	3	3	NaN	NaN	NaN	0.72342	1	17596	17596		6.3563	4.6758	1	7549	+		12050	10231	6981	7127	9540	9540					0.012844783265336446
KLNETGFYSGK	11	Unmodified						0	0	0			REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	415.215427	1242.62445	1.954	0.00081134	-8.4971	-0.0035281	-6.5431	-0.0027168	415.21208424223636	18.82	0.048075	18.82	18.796	18.844	0	1482	31	0.72465914	0.018573165	0.72465914	440.2048		11.282532	-0.099789	-0.00085802	-0.0010974	NaN	6.3563	69	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7549	+		12051	10231	6981	7127							0.012844783265336446
KLNETGFYSGK	11	Unmodified						0	0	0			REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	415.215427	1242.62445	1.477	0.00061327	-6.4745	-0.0026883	-4.9975	-0.002075	415.54751693616606	19.034	0.072039	19.02	18.972	19.044	-0.014059	1476	37	0.72837335	0.022280514	0.7268539	442.46106		13.534637	0.099789	0.0016614	0.0010974	NaN	6.3563	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8078.7	+		12052	10231	6981	7127							0.012844783265336446
KLNGQVLVF	9	Unmodified	_KLNGQVLVF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.30820951440006	2	509.30821	1016.60187	1.5997	0.00081476	-2.3797	-0.001212	-0.77995	-0.00039724	509.30704521734106	24.092	0.048244	24.092	24.068	24.116	0	1290	43	0.84311575	0.025819898	0.84311575	342.27786	0	10.482056						72	3	2	NaN	NaN	NaN	0.20577	1	9251	9251		24.961	4.4056	1	10990			12053	1179	6982	7128	9541	9541					0.09422923719614573
KLNGQVLVF	9	Unmodified	_KLNGQVLVF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.30820951440006	2	509.30821	1016.60187	1.3053	0.00066482	-2.1687	-0.0011045	-0.86334	-0.00043971	509.30685475290954	24.116	0.096491	24.103	24.079	24.175	-0.012749	1287	37	0.8449601	0.02212894	0.84344065	343.0266	0	8.983643						96	5	3	NaN	NaN	NaN	0.29681	1	9074	9074		19.118	3.9429	1	10388			12054	1179	6982	7128	9542	9542					0.09422923719614573
KLNVCFRNY	9	Unmodified	_KLNVCFRNY_					0	0	0		ENSG00000149557|ENST00000278919|FEZ1;nc|ENSG00000149557|Q99689-2|FEZ1;ENST00000532981.1_1_11:125333376-125359673:-|nuORF;ENST00000392709.8_1_11:125325619-125359673:-|nuORF	ENSG00000149557|ENST00000278919|FEZ1	ENSG00000149557|ENST00000278919|FEZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8002256943	2	578.800226	1155.5859	1.9105	0.0011058	3.8936	0.0022536	5.804	0.0033594	578.8025866814189	17.093	0.12007	17.093	17.069	17.189	0	1215	46	0.8891654	0.02758801	0.8891654	360.39203	0	11.181824						108	6	2	NaN	NaN	NaN	0.29681	1	15015	15015		19.118	8.8746	1	13704			12055	3685	6983	7129	9543	9543					0.014328942110523712
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.79948902530003	2	474.799489	947.584425	1.1107	0.00052737	-1.7106	-0.0008122	-0.59991	-0.00028484	474.79855705323064	32.949	0.21725	32.949	32.876	33.094	0	1317	61	0.8265074	0.0369215	0.8265074	335.8616	0	15.0035095						411	10	4	NaN	NaN	NaN	0.27293	1	7037	7037		44.247	0	1	110380			12056	3097	6984	7130	9544	9544					0.10853628184611352
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.79948902530003	2	474.799489	947.584425	1.0443	0.00049583	-1.0381	-0.0004929	0.0061603	2.9249E-06	474.79922975367805	32.418	0.0965	32.418	32.37	32.466	0	1332	61	0.8172735	0.03693348	0.8172735	332.10928	0	15.008392						144	5	3	NaN	NaN	NaN	0.62311	1	7038	7038		23.85	0	1	12376			12057	3097	6984	7130	9545	9545					0.10853628184611352
KLPALFFL	8	Unmodified						0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	474.799489	947.584425	0.54868	0.00026051	-1.4444	-0.0006858	-0.89571	-0.00042528	474.7986782867014	33.02	0.217	33.018	32.945	33.162	-0.0024796	1314	64	0.8283535	0.038761258	0.8268341	336.61182		15.751129	0.034402	0.00013666	0.00016337	NaN	44.247	405	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101240			12058	3097	6984	7130							0.10853628184611352
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.3336959834	2	548.333696	1094.65284	1.1409	0.00062561	-2.4266	-0.0013306	-1.2857	-0.00070498	548.331858193383	36.808	0.12033	36.808	36.76	36.88	0	1239	49	0.87444305	0.029451072	0.87444305	354.65744	0	11.944794						151	6	3	NaN	NaN	NaN	0.29681	1	12624	12624		19.118	0	1	10842			12059	3097	6985	7131	9546	9546					0.1092987276445001
KLPALFFLF	9	Unmodified	_KLPALFFLF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.3336959834	2	548.333696	1094.65284	1.146	0.0006284	-1.286	-0.00070517	-0.13999	-7.6763E-05	548.332850412354	37.072	0.26513	37.072	37	37.265	0	1227	64	0.88180584	0.038639963	0.88180584	357.64365	0	15.6716						435	12	4	NaN	NaN	NaN	0.11467	1	12625	12625		33.698	0	1	87645			12060	3097	6985	7131	9547	9547					0.1092987276445001
KLPDVYGVFQF	11	Unmodified	_KLPDVYGVFQF_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.85043846985	2	656.850438	1311.68632	0.90204	0.0005925	-2.0537	-0.001349	-1.1517	-0.00075649	656.8498888170847	30.727	0.14475	30.722	30.649	30.794	-0.0057545	1098	43	0.960755	0.02564758	0.9592356	388.8614	0	10.380737						112	7	2	NaN	NaN	NaN	0.40296	1	18143	18143		33.567	17.745	1	12813			12061	6089	6986	7132	9548	9548					0.04294829745686002
KLPERYSGK	9	Unmodified	_KLPERYSGK_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3061981417001	2	539.306198	1076.59784	1.3177	0.00071064	-3.6885	-0.0019893	-2.3709	-0.0012786	539.30449786327	15.292	0.16792	15.28	15.208	15.376	-0.012202	1263	43	0.85970795	0.025797546	0.8581885	348.75388	0	10.465179						133	8	2	NaN	NaN	NaN	0.33202	1	11533	11533		16.858	0.27415	1	14632	+		12062	10733	6987	7133	9549	9549					0.06260834225895451
KLPERYSGK	9	Unmodified						0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.306198	1076.59784	1.6138	0.00087033	-2.3025	-0.0012417	-0.68866	-0.0003714	539.3047230692372	15.15	0.16817	15.15	15.101	15.27	0	1263	55	0.85970795	0.033171892	0.85970795	348.75388		13.456696	-0.065238	0.00053872	0.00075972	NaN	16.858	133	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16731	+		12063	10733	6987	7133							0.06260834225895451
KLPERYSGK	9	Unmodified						0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.306198	1076.59784	1.3177	0.00071064	-3.6885	-0.0019893	-2.3709	-0.0012786	539.30449786327	15.292	0.16792	15.28	15.208	15.376	-0.012202	1263	43	0.85970795	0.025797546	0.8581885	348.75388		10.465179	0.065238	-0.00095631	-0.00075972	NaN	16.858	133	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14632	+		12064	10733	6987	7133							0.06260834225895451
KLQGSDAI	8	Unmodified	_KLQGSDAI_					0	0	0			REV__ENST00000420099.1_1_13:91924337-91924628:-|nuORF	REV__ENST00000420099.1_1_13:91924337-91924628:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.23216753134994	2	416.232168	830.449782	1.8368	0.00076454	-2.6426	-0.0010999	-0.80582	-0.00033541	416.230983359336	54.524	0.16853	54.524	54.476	54.644	0	1383	58	0.7858409	0.03516102	0.7858409	319.9794	0	14.316864						270	8	4	NaN	NaN	NaN	0.84207	1	5141	5141		3.5732	0.41988	1	95958	+		12065	12105	6988	7134	9550	9550					0.027775229720305106
KLQKVSDSHE	10	Unmodified	_KLQKVSDSHE_					0	0	0			REV__ENST00000509552.5_1_6:31112443-31124902:-|nuORF	REV__ENST00000509552.5_1_6:31112443-31124902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.8093019366501	2	585.809302	1169.60405	1.1539	0.00067594	3.7737	0.0022106	4.9275	0.0028866	585.8117514824082	31.041	0.12069	31.036	31.036	31.157	-0.0050716	1023	82	1.0064877	0.04930097	1.0049683	407.88687	0	19.979584						203	6	2	NaN	NaN	NaN	0.77928	1	14938	14938		0.69115	0.17511	1	15359	+		12066	11243	6989	7135	9551	9551					0.026033076667545174
KLRSPQILV	9	Unmodified	_KLRSPQILV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	351.8974812542	3	351.897481	1052.67061	1.6904	0.00059486	1.7273	0.00060783	3.4177	0.0012027	351.89736451571395	21.488	0.096466	21.488	21.464	21.561	0	1512	28	0.7060759	0.016734898	0.7060759	429.764	0	10.185944						60	5	2	NaN	NaN	NaN	0.54912	1	10767	10767		4.6175	0	1	4765.4			12067	2208	6990	7136	9552	9552					0.1463858801932929
KLSDLLPQ	8	Unmodified	_KLSDLLPQ_					0	0	0		tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	tr|U7SI12|U7SI12_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02189PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.5353089171	1	913.535309	912.528032	1.3696	0.0012512	0.32018	0.0002925	1.6898	0.0015437	913.5362653581931	26.673	0.0965	26.663	26.639	26.735	-0.010643	336	94	1.419741	0.055258393	1.4182216	288.62784	0	11.233826						205	5	3	NaN	NaN	NaN	0.22524	1	6163	6163		48.002	6.2177	1	29636			12068	13738	6991	7137	9553	9553					0.06826955557278325
KLTRVPVTMR	10	Unmodified	_KLTRVPVTMR_					0	0	0		ENST00000462001.1_1_3:50327954-50329668:-|nuORF;ENST00000417626.6_1_3:50327849-50329668:-|nuORF	ENST00000462001.1_1_3:50327954-50329668:-|nuORF	ENST00000462001.1_1_3:50327954-50329668:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.9130254597333	3	400.913025	1199.71725	0.75542	0.00030286	2.6272	0.0010533	3.3826	0.0013561	400.9142262598828	41.328	0.096302	41.336	41.288	41.384	0.0082626	1431	46	0.75620437	0.027809858	0.7546849	459.54755	0	16.900116						115	5	2	NaN	NaN	NaN	0.77585	1	15826	15826		1.5256	0.29665	1	15266			12069	6889	6992	7138	9554	9554					0.1253770457894916
KLVADPIV	8	Unmodified	_KLVADPIV_					0	0	0			REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.7709285510999	2	427.770929	853.527304	1.4161	0.00060576	-3.1568	-0.0013504	-1.7407	-0.00074462	427.7700631076297	20.164	0.096367	20.15	20.126	20.222	-0.014143	1401	31	0.77473325	0.018518806	0.7732138	315.31802	0	7.537201						70	5	2	NaN	NaN	NaN	0.83913	1	5305	5305		3.9685	0	1	6316.8	+		12070	12669	6993	7139	9555	9555					0.0946816090821585
KLWFSYIDLLS	11	Unmodified	_KLWFSYIDLLS_					0	0	0			REV__ENSG00000166197|ENST00000605788|NOLC1	REV__ENSG00000166197|ENST00000605788|NOLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8791959093	2	692.879196	1383.74384	0.93019	0.00064451	1.5251	0.0010567	2.4553	0.0017012	692.8804152167899	32.32	0.16895	32.316	32.268	32.437	-0.0037613	1053	109	0.9882094	0.06584442	0.98669	399.75623	0	26.635803						691	8	4	NaN	NaN	NaN	0.20314	1	18997	18997		30.035	0	1	157460	+		12071	10418	6994	7140	9556	9556					0.0673167195127462
KLYEFVHSF	9	Unmodified	_KLYEFVHSF_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3031241365001	2	585.303124	1168.5917	2.0546	0.0012025	-2.6742	-0.0015652	-0.61961	-0.00036266	585.3012096368084	21.898	0.096485	21.898	21.874	21.97	0	1152	40	0.92775106	0.023860574	0.92775106	375.9821	0	9.669769						85	5	3	NaN	NaN	NaN	0.38313	1	15446	15446		14.425	6.8847	1	5742.3			12072	5110	6995	7141	9557	9557					0.014143159943841965
KLYEFVHSF	9	Unmodified						0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.303124	1168.5917	1.8056	0.0010568	-0.10958	-6.4139E-05	1.696	0.00099267	585.3033264767976	22.042	0.096323	22.029	22.005	22.101	-0.013731	1137	40	0.9369253	0.023850322	0.93540585	379.7		9.665619	0.065268	0.0012901	0.0038274	NaN	14.425	73	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3923			12073	5110	6995	7141							0.014143159943841965
KLYELVADER	10	Unmodified	_KLYELVADER_					0	0	0			REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3351525464	2	618.335153	1234.65575	1.3219	0.00081738	-3.2231	-0.001993	-1.9012	-0.0011756	618.3333945105992	21.994	0.096344	21.994	21.97	22.067	0	1095	46	0.9625867	0.027475119	0.9625867	389.85602	0	11.127655						114	5	3	NaN	NaN	NaN	0.64611	1	17398	17398		11.739	0	1	10684	+		12074	9955	6996	7142	9558	9558					0.047810513606464156
KLYELVADER	10	Unmodified						0	0	0			REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.335153	1234.65575	1.3219	0.00081738	-3.2231	-0.001993	-1.9012	-0.0011756	618.3333945105992	21.994	0.096344	21.994	21.97	22.067	0	1095	46	0.9625867	0.027475119	0.9625867	389.85602		11.127655	-0.0049745	-0.00011388	0.0025915	NaN	11.739	114	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10684	+		12075	9955	6996	7142							0.047810513606464156
KLYELVADER	10	Unmodified						0	0	0			REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.335153	1234.65575	1.5644	0.00096732	-2.8608	-0.0017689	-1.2964	-0.00080162	618.3334244464951	22.018	0.072186	22.004	21.98	22.053	-0.013895	1101	34	0.95892316	0.02014625	0.9574037	388.37225		8.159393	0.0049745	0.00033415	-0.0025915	NaN	11.739	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2971.4	+		12076	9955	6996	7142							0.047810513606464156
KLYKAQIQR	9	Unmodified	_KLYKAQIQR_					0	0	0			REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.2363854864333	3	383.236385	1146.68733	2.4511	0.00093937	-4.5854	-0.0017573	-2.1342	-0.00081792	383.2347446153298	15.604	0.071916	15.592	15.568	15.64	-0.012201	1443	34	0.7487872	0.02040279	0.7472678	455.27896	0	12.405304						43	4	2	NaN	NaN	NaN	0.61852	1	14210	14210		4.7291	0	1	3677.5	+		12077	8362	6997	7143	9559	9559					0.11985088905248631
KLYSVKTK	8	Unmodified	_KLYSVKTK_					0	0	0			REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5982435249002	1	966.598244	965.590967	-0.49193	-0.0004755	1.5001	0.00145	1.0082	0.00097451	966.5995558597249	53.713	0.10551	53.712	53.647	53.753	-0.00059128	732	73	1.1827712	0.043380737	1.1812518	240.25636	0	8.81192						145	4	2	NaN	NaN	NaN	0.84727	1	7364	7364		1.2418	0	1	38422	+		12078	9557	6998	7144	9560	9560					0.10679521345343801
KLYSVKTK	8	Unmodified						0	0	0			REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	966.598244	965.590967	1.8633	0.0018011	-0.50811	-0.00049114	1.3552	0.0013099	966.597866915552	53.674	0.22604	53.674	53.626	53.852	0	738	73	1.179155	0.043390036	1.179155	239.5218		8.813812	-0.019158	-0.00084108	-0.0010484	NaN	1.2418	294	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49270	+		12079	9557	6998	7144							0.10679521345343801
KLYSVKTK	8	Unmodified						0	0	0			REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	REV__ENST00000484834.5_1_1:203182159-203191449:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	966.598244	965.590967	-0.49193	-0.0004755	1.5001	0.00145	1.0082	0.00097451	966.5995558597249	53.713	0.10551	53.712	53.647	53.753	-0.00059128	732	73	1.1827712	0.043380737	1.1812518	240.25636		8.81192	0.019158	0.0011001	0.0010484	NaN	1.2418	145	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38422	+		12080	9557	6998	7144							0.10679521345343801
KMDMKSEESD	10	Unmodified	_KMDMKSEESD_					0	0	0		ENST00000456342.5_1_21:17859850-17979403:+|nuORF	ENST00000456342.5_1_21:17859850-17979403:+|nuORF	ENST00000456342.5_1_21:17859850-17979403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5021394700333	3	400.502139	1198.48459	0.80821	0.00032369	-6.4547	-0.0025851	-5.6465	-0.0022614	400.83355683961867	32.78	0.12062	32.78	32.756	32.876	0	1500	40	0.71351165	0.024159491	0.71351165	433.60815	0	14.681976						82	6	2	NaN	NaN	NaN	0.76548	1	16406	16406		1.5256	0	1	7955.6			12081	7061	6999	7145	9561	9561					-0.10671390064476327
KMGKRFIE	8	Unmodified	_KMGKRFIE_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.78658700280005	2	504.786587	1007.55862	1.8742	0.00094605	-4.9236	-0.0024854	-3.0495	-0.0015393	504.7844151700654	19.828	0.072084	19.828	19.78	19.852	0	1539	40	0.68933374	0.024193645	0.68933374	279.88086	0	9.822998						92	4	3	NaN	NaN	NaN	0.83211	1	8897	8897		4.9097	0	1	7136	+		12082	11296	7000	7146	9562	9562					0.055144106706848106
KMHLAPGRFIE	11	Unmodified	_KMHLAPGRFIE_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.85553223525	2	649.855532	1297.69651	1.5477	0.0010058	-5.4776	-0.0035596	-3.9299	-0.0025539	649.8511127184736	34.324	0.072334	34.324	34.3	34.372	0	1101	28	0.95892316	0.016486824	0.95892316	388.16357	0	6.6737366						47	4	2	NaN	NaN	NaN	0.7072	1	18739	18739		6.9844	0	1	3237.6			12083	4439	7001	7147	9563	9563					0.05957114199281932
KMIKIFKLLL	10	Unmodified	_KMIKIFKLLL_					0	0	0			REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8319486304001	1	1246.83195	1245.82467	2.1869	0.0027267	-6.1249	-0.0076367	-3.938	-0.00491	1246.8241794940434	40.198	0.14419	40.204	40.204	40.348	0.0060501	63	31	1.5811787	0.017655015	1.5796592	320.1667	0	3.5748596						58	7	2	NaN	NaN	NaN	0.77884	1	16926	16926		0.79988	0	1	2898.3	+		12084	9009	7002	7148	9564	9564					0.2115928146049555
KMKNEERRMYT	11	Unmodified	_KMKNEERRMYT_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.91487734736666	3	495.914877	1484.7228	1.2692	0.0006294	5.4395	0.0026975	6.7087	0.0033269	496.2524719749461	22.982	0.09638	22.969	22.945	23.041	-0.01354	1302	40	0.8357362	0.023989916	0.8342168	506.7708	0	14.546936						115	5	4	NaN	NaN	NaN	0.75376	1	19527	19527		1.5256	0.64092	1	9650.7			12085	1569	7003	7149	9565	9565					-0.00016984691546895192
KMLDNFYNF	9	Unmodified	_KMLDNFYNF_					0	0	0		ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI;EED-C11orf73|1|fusion	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.2787917604501	2	596.278792	1190.54303	1.8613	0.0011099	-1.8111	-0.0010799	0.050203	2.9935E-05	596.7785080574596	25.974	0.26547	25.974	25.877	26.143	0	1179	67	0.9112251	0.04042965	0.9112251	369.20526	0	16.381073						324	12	4	NaN	NaN	NaN	0.19268	1	16162	16162		25.801	2.7151	1	65944			12086	280	7004	7150	9566	9566					-0.04461920637027106
KMLDNFYNF	9	Unmodified	_KMLDNFYNF_					0	0	0		ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI;EED-C11orf73|1|fusion	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2787917604501	2	596.278792	1190.54303	1.8256	0.0010886	-1.721	-0.0010262	0.10463	6.2389E-05	596.2796652934431	25.998	0.26549	25.987	25.866	26.131	-0.011137	1179	76	0.9112251	0.04592049	0.90970564	369.20526	0	18.605835						340	12	4	NaN	NaN	NaN	0.026469	1	15548	15548		63.731	27.496	1	67657			12087	280	7004	7150	9567	9567					-0.04461920637027106
KMLLFNKLNR	10	Unmodified	_KMLLFNKLNR_					0	0	0			REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.2567921692	3	426.256792	1275.74855	1.6666	0.0007104	-5.0936	-0.0021712	-3.427	-0.0014608	426.25438195623605	22.863	0.096521	22.863	22.814	22.911	0	1431	43	0.75620437	0.025957286	0.75620437	459.23654	0	15.763641						104	5	3	NaN	NaN	NaN	0.75017	1	18341	18341		4.6175	0.36856	1	7973.3	+		12088	12556	7005	7151	9568	9568					0.12170277613040525
KMLLFNKLNR	10	Unmodified						0	0	0			REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	426.256792	1275.74855	1.6666	0.0007104	-5.0936	-0.0021712	-3.427	-0.0014608	426.25438195623605	22.863	0.096521	22.863	22.814	22.911	0	1431	43	0.75620437	0.025957286	0.75620437	459.23654		15.763641	-0.13757	0.0013521	0.0016867	NaN	4.6175	104	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7973.3	+		12089	12556	7005	7151							0.12170277613040525
KMLLFNKLNR	10	Unmodified						0	0	0			REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	REV__ENST00000511297.5_1_5:65342349-65344528:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	426.256792	1275.74855	2.1334	0.0009094	-7.2217	-0.0030783	-5.0883	-0.0021689	426.25406410271296	23.151	0.048273	23.138	23.114	23.162	-0.013294	1434	31	0.75435036	0.018540919	0.7528309	458.11063		11.259766	0.13757	-0.0013692	-0.0016867	NaN	4.6175	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2929.7	+		12090	12556	7005	7151							0.12170277613040525
KMNSFIDEL	9	Unmodified	_KMNSFIDEL_					0	0	0		nc|ENSG00000133794|O00327-3|BMAL1;nc|ENSG00000133794|O00327-5|BMAL1;nc|ENSG00000133794|O00327-4|BMAL1;nc|ENSG00000133794|O00327-6|BMAL1;nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1	nc|ENSG00000133794|O00327-3|BMAL1	nc|ENSG00000133794|O00327-3|BMAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.77079955285	2	548.7708	1095.52705	1.5763	0.00086505	7.6486	0.0041973	9.2249	0.0050624	548.7753875319186	28.074	0.096529	28.074	28.05	28.146	0	1227	70	0.88180584	0.042333663	0.88180584	357.64005	0	17.169525						144	5	2	NaN	NaN	NaN	0.44082	1	12645	12645		12.049	0	1	32890			12091	2834	7006	7152	9569	9569					-0.01689626873940142
KMPKFKMPSF	10	Unmodified	_KMPKFKMPSF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.22421209929996	3	414.224212	1239.65081	1.6715	0.00069239	-2.8115	-0.0011646	-1.14	-0.00047221	414.22296933604537	21.296	0.313	21.296	21.127	21.44	0	1437	73	0.7524962	0.044517517	0.7524962	457.12683	0	27.043549						677	14	4	NaN	NaN	NaN	0.21251	1	17525	17525		28.236	14.06	1	198270			12092	5421	7007	7153	9570	9570					0.040567526926906794
KMPKFKMPSF	10	Unmodified	_KMPKFKMPSF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.22421209929996	3	414.224212	1239.65081	0.97494	0.00040384	-0.43591	-0.00018056	0.53903	0.00022328	414.22416386086985	22.235	0.072395	22.222	22.197	22.27	-0.013731	1434	52	0.75435036	0.031531572	0.7528309	458.2532	0	19.154785						85	4	2	NaN	NaN	NaN	0.5917	1	16785	16785		8.9416	3.2444	1	12584			12093	5421	7007	7153	9571	9571					0.040567526926906794
KMPKMKMPTF	10	Unmodified	_KMPKMKMPTF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8265402927501	2	619.82654	1237.63853	1.3006	0.00080614	-2.9048	-0.0018005	-1.6042	-0.00099431	619.8252942421153	19.324	0.14396	19.324	19.252	19.396	0	1167	49	0.91857195	0.029374838	0.91857195	372.01974	0	11.8967285						161	7	3	NaN	NaN	NaN	0.60059	1	17471	17471		14.854	5.892	1	11433			12094	2444	7008	7154	9572	9572					0.02921392958000979
KMVSYKEML	9	Unmodified	_KMVSYKEML_					0	0	0		nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1;nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1	nc|ENSG00000124615|Q9NZB8-4|MOCS1	nc|ENSG00000124615|Q9NZB8-4|MOCS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1128.5791643417	1	1128.57916	1127.57189	0.66961	0.00075571	1.5265	0.0017227	2.1961	0.0024784	1128.5806134926022	35.673	0.16877	35.674	35.602	35.77	0.00053024	60	52	1.582944	0.030008674	1.5814246	320.8929	0	6.083313						115	8	2	NaN	NaN	NaN	0.23112	1	13558	13558		23.334	2.779	1	10442			12095	2428	7009	7155	9573	9573					0.013204806677549641
KNAIANAST	9	Unmodified	_KNAIANAST_					0	0	0		ENST00000558036.5_1_15:101821931-101826098:-|nuORF;ENSG00000131876|ENST00000254193|SNRPA1	ENST00000558036.5_1_15:101821931-101826098:-|nuORF	ENST00000558036.5_1_15:101821931-101826098:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.2405238797	2	445.240524	888.466495	0.81324	0.00036209	-1.5056	-0.00067033	-0.69231	-0.00030824	445.239522380566	41.641	0.072071	41.649	41.577	41.649	0.0082588	1413	40	0.7673241	0.024086237	0.76580465	312.1082	0	9.797028						70	4	2	NaN	NaN	NaN	0.6532	1	5799	5799		3.2116	0.42642	1	6072.5			12096	2732	7010	7156	9574	9574					0.017800238579980032
KNCHHVIA	8	Unmodified	_KNCHHVIA_					0	0	0		ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.23980398569995	2	461.239804	920.465055	1.077	0.00049673	6.4418	0.0029712	7.5187	0.0034679	461.24230675347184	18.89	0.12015	18.876	18.828	18.948	-0.014061	1374	46	0.791392	0.027749658	0.7898726	321.72742	0	11.281158						147	6	3	NaN	NaN	NaN	0.69631	1	6292	6292		19.285	1.315	1	19740			12097	6134	7011	7157	9575	9575					0.0016411128823392573
KNCNAIRHF	9	Unmodified	_KNCNAIRHF_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.1906703503	3	368.19067	1101.55018	2.1012	0.00077363	-5.2151	-0.0019201	-3.1139	-0.0011465	368.18927309087405	13.373	0.048011	13.373	13.349	13.397	0	1491	25	0.7190863	0.014864981	0.7190863	437.4326	0	9.042633						34	3	2	NaN	NaN	NaN	0.62619	1	12903	12903		2.3381	0.30228	1	2097			12098	2974	7012	7158	9576	9576					0.003468567540494405
KNCNAIRHF	9	Unmodified						0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	368.19067	1101.55018	2.2187	0.0008169	-3.6879	-0.0013579	-1.4692	-0.00054096	368.1889560385683	13.421	0.071938	13.411	13.387	13.459	-0.010098	1491	28	0.7190863	0.016722202	0.71756685	437.4326		10.172394	0.019356	0.0008515	-0.00075972	NaN	2.3381	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3125.7			12099	2974	7012	7158							0.003468567540494405
KNENIKVPQ	9	Unmodified	_KNENIKVPQ_					0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.30365545275	2	535.303655	1068.59276	2.0657	0.0011058	0.44581	0.00023864	2.5115	0.0013444	535.8068185197558	19.66	0.16807	19.66	19.612	19.78	0	1266	58	0.85786515	0.03501284	0.85786515	348.0392	0	14.2048645						260	8	4	NaN	NaN	NaN	0.46215	1	11507	11507		11.17	0.56537	1	27620	+		12100	13557	7013	7159	9577	9577					0.061205303632732466
KNENIKVPQ	9	Unmodified						0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.303655	1068.59276	2.0657	0.0011058	0.44581	0.00023864	2.5115	0.0013444	535.8068185197558	19.66	0.16807	19.66	19.612	19.78	0	1266	58	0.85786515	0.03501284	0.85786515	348.0392		14.2048645	0	0	0	NaN	11.17	260	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27620	+		12101	13557	7013	7159							0.061205303632732466
KNFSVTMLF	9	Unmodified	_KNFSVTMLF_					0	0	0			REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7862526518	2	543.786253	1085.55795	1.1419	0.00062092	0.13028	7.0843E-05	1.2721	0.00069177	543.7866853786388	26.746	0.12064	26.735	26.711	26.832	-0.010645	1248	70	0.8689189	0.04236108	0.86739945	352.45364	0	17.182648						206	6	3	NaN	NaN	NaN	0.089764	1	11893	11893		37.302	0	1	26377	+		12102	12834	7014	7160	9578	9578					0.018595712309661394
KNFSVTMLF	9	Unmodified						0	0	0			REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.786253	1085.55795	1.3952	0.00075867	-0.84461	-0.00045928	0.55056	0.00029939	543.7858585322587	26.722	0.12115	26.722	26.674	26.795	0	1251	64	0.8670771	0.038685918	0.8670771	351.70657		15.691895	-0.0065623	-0.0004827	-0.00016117	NaN	37.302	182	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25629	+		12103	12834	7014	7160							0.018595712309661394
KNFSVTMLF	9	Unmodified						0	0	0			REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.786253	1085.55795	1.1419	0.00062092	0.13028	7.0843E-05	1.2721	0.00069177	543.7866853786388	26.746	0.12064	26.735	26.711	26.832	-0.010645	1248	70	0.8689189	0.04236108	0.86739945	352.45364		17.182648	0.0065623	0.00057755	0.00016117	NaN	37.302	206	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26377	+		12104	12834	7014	7160							0.018595712309661394
KNGGGAFL	8	Unmodified	_KNGGGAFL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6;nc|ENSG00000131389|P31641-2|SLC6A6;nc|ENSG00000132164|P48066-2|SLC6A11;ENSG00000157103|ENST00000287766|SLC6A1;ENSG00000103546|ENST00000568943|SLC6A2;ENSG00000142319|ENST00000270349|SLC6A3;nc|ENSG00000103546|P23975-2|SLC6A2;ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.409714473	1	763.409714	762.402438	1.2421	0.00094827	6.1138	0.0046673	7.3559	0.0056156	763.4142124732344	32.537	0.19308	32.534	32.51	32.703	-0.0031052	576	49	1.2765218	0.028763175	1.2750024	260.27	0	5.864502						133	9	2	NaN	NaN	NaN	0.8439	1	4171	4171		3.1533	1.483	1	9963.5			12105	2707	7015	7161	9579	9579					0.011732884917023512
KNGLKFPT	8	Unmodified	_KNGLKFPT_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.76617752420003	2	452.766178	903.517802	1.7606	0.00079714	-4.8209	-0.0021828	-3.0603	-0.0013856	452.7640446566461	18.125	0.07196	18.125	18.077	18.149	0	1512	22	0.7060759	0.013014615	0.7060759	287.12277	0	5.292328						40	4	2	NaN	NaN	NaN	0.79607	1	6151	6151		9.746	1.4557	1	2980			12106	5584	7016	7162	9580	9580					0.06218392622713509
KNGSVVAM	8	Unmodified	_KNGSVVAM_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF;PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion	nc|ENSG00000017260|P98194-2|ATP2C1;PSMD1-ATP2C1|1|fusion	nc|ENSG00000017260|P98194-2|ATP2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4236499777	1	805.42365	804.416374	2.0039	0.001614	2.0364	0.0016402	4.0403	0.0032542	805.424846384639	55.028	0.12019	55.028	55.004	55.124	0	414	61	1.3733286	0.0357666	1.3733286	279.74933	0	7.2857056						98	6	2	NaN	NaN	NaN	0.84512	1	4797	4797		2.4615	0.79115	1	8911.8			12107	449;8107	7017	7163	9581	9581					0.0063419792849117584
KNHRVHMAE	9	Unmodified	_KNHRVHMAE_					0	0	0		nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	nc|ENSG00000188785|Q8NEK5|ZNF548	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2852741218501	2	561.285274	1120.556	1.2773	0.00071692	-0.77648	-0.00043583	0.50081	0.0002811	561.7866073091351	28.049	0.12067	28.04	27.968	28.088	-0.0089779	1221	61	0.885486	0.03680587	0.88396657	359.03302	0	14.923492						92	6	2	NaN	NaN	NaN	0.58159	1	13301	13301		6.2502	1.5211	1	7448.4			12108	5566	7018	7164	9582	9582					0.0005395526573011011
KNKGRDRR	8	Unmodified	_KNKGRDRR_					0	0	0		ENST00000561400.1_1_15:64067831-64126137:-|nuORF	ENST00000561400.1_1_15:64067831-64126137:-|nuORF	ENST00000561400.1_1_15:64067831-64126137:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.6024344753998	1	1029.60243	1028.59516	-0.34464	-0.00035484	-0.055247	-5.6882E-05	-0.39988	-0.00041172	1029.604605537141	55.698	0.096333	55.698	55.674	55.77	-0.00059128	81	67	1.5705823	0.038865685	1.5690628	318.7574	0	7.88797						174	5	5	NaN	NaN	NaN	0.82797	1	9533	9533		5.4659	0	1	10558			12109	7598	7019	7165	9583	9583					0.08200423611583574
KNKIYFKYNE	10	Unmodified	_KNKIYFKYNE_					0	0	0		tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.8587948182002	2	673.858795	1345.70304	0.81608	0.00054992	-9.619	-0.0064819	-8.8029	-0.0059319	674.353706258612	31.017	0.14485	31.012	30.94	31.084	-0.0050716	1191	61	0.90387505	0.036750257	0.9023556	365.74307	0	14.870605						257	7	4	NaN	NaN	NaN	0.76548	1	18624	18624		3.5698	0.68031	1	19236			12110	13775	7020	7166	9584	9584					0.04401330631685596
KNKIYFKYNE	10	Unmodified						0	0	0		tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	tr|U7SM86|U7SM86_FUSNUtRNA-specific2-thiouridylaseMnmAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	673.858795	1345.70304	0.64969	0.0004378	-9.3689	-0.0063133	-8.7192	-0.0058755	674.354071737321	31.018	0.1207	31.018	30.946	31.066	0	1188	52	0.90571284	0.031242788	0.90571284	366.48672		12.642059	0.0030567	0.00022915	0.0016786	NaN	3.5698	156	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10707			12111	13775	7020	7166							0.04401330631685596
KNLPASFTS	9	Unmodified	_KNLPASFTS_					0	0	0			REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	322.1747917937667	3	322.174792	963.502546	1.2022	0.00038731	-9.8571	-0.0031757	-8.6549	-0.0027884	322.1717677449958	12.604	0.07204	12.604	12.556	12.628	0	1530	49	0.6949163	0.029768705	0.6949163	423.47565	0	18.140778						84	4	2	NaN	NaN	NaN	0.62619	1	7439	7439		2.3381	0	1	10061	+		12112	10268	7021	7167	9585	9585					0.019334810348709652
KNLYMPLL	8	Unmodified	_KNLYMPLL_					0	0	0			REV__ENST00000374016.5_1_9:118054157-118068258:+|nuORF	REV__ENST00000374016.5_1_9:118054157-118068258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.28588851105	2	496.285889	990.557224	1.5047	0.00074678	-2.0542	-0.0010195	-0.54949	-0.0002727	496.2851762801404	29.546	0.096518	29.546	29.522	29.618	0	1308	46	0.83204526	0.027686596	0.83204526	337.9022	0	11.243805						79	5	2	NaN	NaN	NaN	0.76633	1	8247	8247		13.737	1.1492	1	6563.5	+		12113	11928	7022	7168	9586	9586					0.06156776581917711
KNNDHIHHPA	10	Unmodified	_KNNDHIHHPA_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7917778855001	2	591.791778	1181.569	1.1006	0.0006513	-10.615	-0.006282	-9.5147	-0.0056307	591.7853569249613	12.532	0.14402	12.532	12.508	12.652	0	1206	28	0.894683	0.01654923	0.894683	362.53442	0	6.7059326						55	7	2	NaN	NaN	NaN	0.70677	1	15873	15873		7.5876	0.60324	1	3857.6	+		12114	11099	7023	7169	9587	9587					-0.01451890350517715
KNNDHIHHPA	10	Unmodified						0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.791778	1181.569	1.1006	0.0006513	-10.615	-0.006282	-9.5147	-0.0056307	591.7853569249613	12.532	0.14402	12.532	12.508	12.652	0	1206	28	0.894683	0.01654923	0.894683	362.53442		6.7059326	0.0034437	-0.00025523	-0.00015968	NaN	7.5876	55	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3857.6	+		12115	11099	7023	7169							-0.01451890350517715
KNNDHIHHPA	10	Unmodified						0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.791778	1181.569	2.2729	0.0013451	-10.138	-0.0059998	-7.8654	-0.0046547	591.7870925214296	12.534	0.048068	12.525	12.477	12.525	-0.0088425	1203	22	0.8965218	0.012870252	0.89500237	363.2795		5.215149	-0.0034437	0.0003093	0.00015968	NaN	7.5876	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1701.7	+		12116	11099	7023	7169							-0.01451890350517715
KNNKFHNRM	9	Unmodified	_KNNKFHNRM_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8063737047	2	594.806374	1187.59819	2.1591	0.0012842	-6.0278	-0.0035854	-3.8687	-0.0023011	594.8015480001716	16.73	0.023935	16.717	16.717	16.741	-0.013296	1155	49	0.92591566	0.029377997	0.9243962	375.16818	0	11.903534						39	2	2	NaN	NaN	NaN	0.62619	1	15473	15473		4.4131	0.44458	1	2879.7			12117	5967	7024	7170	9588	9588					0.011899306741042892
KNPNNLDEI	9	Unmodified	_KNPNNLDEI_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7696454599	2	528.769645	1055.52474	1.7535	0.00092718	-2.7029	-0.0014292	-0.94948	-0.00050206	528.7684598259148	16.302	0.16797	16.302	16.278	16.446	0	1287	43	0.8449601	0.025819898	0.8449601	342.8576	0	10.476868						134	8	2	NaN	NaN	NaN	0.16171	1	10886	10886		27.789	1.0573	1	26490			12118	2967	7025	7171	9589	9589					-0.0008033928741042473
KNPWKLLKH	9	Unmodified	_KNPWKLLKH_					0	0	0		tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.5731090717	3	388.573109	1162.6975	0.58156	0.00022598	-1.8396	-0.0007148	-1.258	-0.00048882	388.57231828819835	39.863	0.096313	39.863	39.863	39.959	0	1434	70	0.75435036	0.042618692	0.75435036	458.58655	0	25.908875						97	5	2	NaN	NaN	NaN	0.68748	1	15247	15247		0.094767	0	1	8068.3			12119	13864	7026	7172	9590	9590					0.12265696630493039
KNRTLDECL	9	Unmodified	_KNRTLDECL_					0	0	0		ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000204510|ENST00000697200|PRAMEF7	ENSG00000204510|ENST00000697200|PRAMEF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5513696868	1	1091.55137	1090.54409	2.2657	0.0024731	7.2357	0.0078982	9.5014	0.010371	1091.5584296163695	30.198	0.096533	30.198	30.173	30.27	0	105	88	1.5564433	0.051251054	1.5564433	315.6503	0	10.393799						125	5	2	NaN	NaN	NaN	0.39244	1	12427	12427		14.042	1.4537	1	11521			12120	5263	7027	7173	9591	9591					0.002442937318846816
KNRTLDECL	9	Unmodified						0	0	0		ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000204510|ENST00000697200|PRAMEF7	ENSG00000204510|ENST00000697200|PRAMEF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1091.55137	1090.54409	1.0325	0.0011271	8.9581	0.0097782	9.9907	0.010905	1091.5622596022627	30.172	0.096523	30.166	30.142	30.238	-0.0064106	102	67	1.5582114	0.038882017	1.556692	316.00885		7.885376	-0.015769	0.00080624	0.00012429	NaN	14.042	120	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9883.5			12121	5263	7027	7173							0.002442937318846816
KNSLSMQQI	9	Unmodified	_KNSLSMQQI_					0	0	0			REV__nc|ENSG00000175746|Q8N8G6|LINC02915	REV__nc|ENSG00000175746|Q8N8G6|LINC02915	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5455560274	1	1048.54556	1047.53828	2.2173	0.0023249	-3.8554	-0.0040426	-1.6381	-0.0017177	1048.5418093723047	23.61	0.072308	23.61	23.586	23.658	0	204	46	1.4979934	0.026613235	1.4979934	303.9524	0	5.4000244						91	4	3	NaN	NaN	NaN	0.064504	1	10530	10530		40.957	8.5041	1	8120.6	+		12122	13176	7028	7174	9592	9592					0.01641195220213376
KNSLSMQQI	9	Unmodified						0	0	0			REV__nc|ENSG00000175746|Q8N8G6|LINC02915	REV__nc|ENSG00000175746|Q8N8G6|LINC02915	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1048.54556	1047.53828	2.2173	0.0023249	-3.8554	-0.0040426	-1.6381	-0.0017177	1048.5418093723047	23.61	0.072308	23.61	23.586	23.658	0	204	46	1.4979934	0.026613235	1.4979934	303.9524		5.4000244	0.0066565	-7.652E-05	-0.00012739	NaN	40.957	91	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8120.6	+		12123	13176	7028	7174							0.01641195220213376
KNTGMYEIN	9	Unmodified	_KNTGMYEIN_					0	0	0		tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2527739752001	2	535.252774	1068.491	1.1131	0.00059577	-10.46	-0.0055987	-9.3469	-0.005003	535.2474736457339	31.525	0.096563	31.525	31.501	31.597	0	1257	61	0.86339295	0.036837757	0.86339295	350.28232	0	14.945221						134	5	4	NaN	NaN	NaN	0.46215	1	11473	11473		11.17	1.4243	1	9592.4			12124	13733	7029	7175	9593	9593					-0.040510840507977264
KNTGMYEIN	9	Unmodified						0	0	0		tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.252774	1068.491	0.57486	0.00030769	-8.1118	-0.0043419	-7.5369	-0.0040342	535.2488728126165	31.524	0.072409	31.519	31.495	31.568	-0.0044174	1254	55	0.8652351	0.033168256	0.86371565	351.0297		13.456512	-0.0027309	0.0013849	0.00016137	NaN	11.17	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7155.5			12125	13733	7029	7175							-0.040510840507977264
KNVLDGFTMC	10	Unmodified	_KNVLDGFTMC_					0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2648271054501	2	564.264827	1126.5151	1.9408	0.0010951	-0.86407	-0.00048757	1.0767	0.00060756	564.2629123109867	21.368	0.024046	21.368	21.344	21.368	0	1203	31	0.8965218	0.01838702	0.8965218	363.48428	0	7.4548035						31	2	2	NaN	NaN	NaN	0.77513	1	13952	13952		1.7022	0	1	2720.2	+		12126	10226	7030	7176	9594	9594					-0.04309566888764493
KNWTWELVF	9	Unmodified	_KNWTWELVF_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.81639868725	2	611.816399	1221.61824	0.99813	0.00061067	-10.002	-0.0061194	-9.0039	-0.0055087	611.8101076167502	36.059	0.072353	36.06	35.988	36.06	0.0011024	1194	37	0.902037	0.022059679	0.9005176	365.376	0	8.935425						73	4	2	NaN	NaN	NaN	0.62619	1	16331	16331		4.4131	0.44458	1	6303.2	+		12127	10070	7031	7177	9595	9595					0.016300048856919602
KNYKELELL	9	Unmodified	_KNYKELELL_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3293388870001	2	575.329339	1148.64412	1.9847	0.0011419	-5.282	-0.0030389	-3.2973	-0.001897	575.3268790301917	28.17	0.096523	28.17	28.122	28.219	0	1182	70	0.9093879	0.042274177	0.9093879	368.6148	0	17.13559						234	5	4	NaN	NaN	NaN	0.060816	1	14769	14769		42.318	0	1	80975			12128	3309	7032	7178	9596	9596					0.07574854337326542
KNYLEGSIV	9	Unmodified	_KNYLEGSIV_					0	0	0			REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	REV__tr|U7T8A7|U7T8A7_FUSNUPTSsystem,N-acetylglucosamine-specificIIBCcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00177PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.7794818647001	2	511.779482	1021.54441	1.9499	0.00099792	-1.3372	-0.00068435	0.61271	0.00031357	511.7786571256218	16.086	0.11987	16.086	16.062	16.182	0	1305	37	0.83389086	0.022145689	0.83389086	338.51096	0	8.989838						90	6	2	NaN	NaN	NaN	0.21199	1	9438	9438		24.562	2.727	1	11332	+		12129	13635	7033	7179	9597	9597					0.034500367233931684
KNYNRCSSNN	10	Unmodified	_KNYNRCSSNN_					0	0	0			REV__ENSG00000152661|ENST00000282561|GJA1	REV__ENSG00000152661|ENST00000282561|GJA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.51224925220004	3	400.512249	1198.51492	2.0982	0.00084034	-5.8284	-0.0023343	-3.7302	-0.001494	400.510252687055	16.011	0.11981	15.999	15.975	16.094	-0.012611	1410	37	0.76917666	0.02222979	0.7676573	467.43622	0	13.509277						109	6	3	NaN	NaN	NaN	0.71736	1	15766	15766		3.261	0.79986	1	8983.8	+		12130	10054	7034	7180	9598	9598					-0.07639850564396511
KPAENDVKL	9	Unmodified	_KPAENDVKL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.28493138334994	2	507.284931	1012.55531	1.7214	0.00087326	-1.7803	-0.0009031	-0.058816	-2.9836E-05	507.2839799198689	13.18	0.31226	13.18	13.084	13.397	0	1320	46	0.824661	0.027698576	0.824661	334.80368	0	11.245361						327	14	4	NaN	NaN	NaN	0.057383	1	9092	9092		43.776	14.88	1	51238			12131	4316	7035	7181	9599	9599					0.04953439097653245
KPAETLGV	8	Unmodified	_KPAETLGV_					0	0	0			REV__ENSG00000071243|ENST00000315870|ING3	REV__ENSG00000071243|ENST00000315870|ING3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.4668950009001	1	814.466895	813.459619	2.0893	0.0017016	5.8352	0.0047525	7.9244	0.0064542	814.4710504148067	57.165	0.072071	57.165	57.141	57.213	0	309	82	1.435777	0.04811299	1.435777	292.41556	0	9.798859						83	4	2	NaN	NaN	NaN	0.82797	1	4937	4937		5.4659	2.3125	1	6647.6	+		12132	8577	7036	7182	9600	9600					0.04542710977432307
KPAETLGV	8	Unmodified						0	0	0			REV__ENSG00000071243|ENST00000315870|ING3	REV__ENSG00000071243|ENST00000315870|ING3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	814.466895	813.459619	2.0893	0.0017016	5.8352	0.0047525	7.9244	0.0064542	814.4710504148067	57.165	0.072071	57.165	57.141	57.213	0	309	82	1.435777	0.04811299	1.435777	292.41556		9.798859	0.0012796	-0.0011523	-0.001021	NaN	5.4659	83	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6647.6	+		12133	8577	7036	7182							0.04542710977432307
KPAETLGV	8	Unmodified						0	0	0			REV__ENSG00000071243|ENST00000315870|ING3	REV__ENSG00000071243|ENST00000315870|ING3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	814.466895	813.459619	0.029916	2.4366E-05	9.3432	0.0076098	9.3731	0.0076341	814.4740917591573	57.163	0.072124	57.162	57.138	57.21	-0.00053787	303	49	1.4393384	0.028494716	1.437819	293.14087		5.8033447	-0.0012796	0.0017049	0.001021	NaN	5.4659	88	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7070.3	+		12134	8577	7036	7182							0.04542710977432307
KPARWRKRR	9	Unmodified	_KPARWRKRR_					0	0	0		SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1253.7814018939998	1	1253.7814	1252.77413	1.4268	0.0017889	2.3506	0.0029471	3.7774	0.004736	1253.7851602644457	39.74	0.048248	39.746	39.746	39.794	0.0053368	69	64	1.5776473	0.03708136	1.5761279	319.43216	0	7.5079956						102	3	2	NaN	NaN	NaN	0.68801	1	17089	17089		0.23014	0.037651	1	22373			12135	13675	7037	7183	9601	9601					0.1578493297033674
KPARWRKRR	9	Unmodified	_KPARWRKRR_					0	0	0		SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1253.7814018939998	1	1253.7814	1252.77413	1.4444	0.001811	3.3112	0.0041516	4.7557	0.0059626	1253.787606512205	39.668	0.024071	39.673	39.673	39.697	0.0053368	66	112	1.579413	0.065368414	1.5778936	319.78967	0	13.235382						111	2	2	NaN	NaN	NaN	0.68801	1	17090	17090		0.23014	0.037651	1	27794			12136	13675	7037	7183	9602	9602					0.1578493297033674
KPARWRKRR	9	Unmodified						0	0	0		SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	SFMBT2|p.R691W|1|0.28|ENSG00000198879|chr10:7172575-7172575|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1253.7814	1252.77413	1.778	0.0022292	2.9322	0.0036763	4.7102	0.0059056	1253.7852523559968	40.056	0.048058	40.056	40.056	40.104	0	69	61	1.5776473	0.03532493	1.5776473	319.43216		7.1523743	0.1911	-8.1818E-05	-0.00012317	NaN	0.23014	90	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20032			12137	13675	7037	7183							0.1578493297033674
KPERHQLLEE	10	Unmodified	_KPERHQLLEE_					0	0	0			REV__ENST00000486301.5_1_3:46717393-46718248:-|nuORF	REV__ENST00000486301.5_1_3:46717393-46718248:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.8436760702501	2	639.843676	1277.6728	1.8664	0.0011942	-9.9713	-0.00638	-8.1049	-0.0051859	639.8366994878044	22.332	0.1446	22.332	22.308	22.453	0	1095	52	0.9625867	0.031145215	0.9625867	389.71088	0	12.609375						160	7	3	NaN	NaN	NaN	0.64611	1	18374	18374		11.739	1.1339	1	20572	+		12138	10781	7038	7184	9603	9603					0.04506971966475248
KPESNEQVL	9	Unmodified	_KPESNEQVL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2720209733501	2	522.272021	1042.52949	1.6636	0.00086884	-1.7422	-0.00090989	-0.078609	-4.1055E-05	522.2711580073461	14.261	0.31215	14.261	14.141	14.453	0	1305	52	0.83389086	0.031368017	0.83389086	338.42038	0	12.730164						326	14	3	NaN	NaN	NaN	0.030696	1	10325	10325		58.2	18.741	1	55691			12139	4431	7039	7185	9604	9604					0.009925448553985916
KPESNEQVL	9	Unmodified	_KPESNEQVL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2720209733501	2	522.272021	1042.52949	1.3593	0.00070995	-2.1213	-0.0011079	-0.76194	-0.00039794	522.2708328773095	14.237	0.3353	14.225	14.13	14.465	-0.011218	1302	49	0.8357362	0.029521227	0.8342168	339.16928	0	11.980682						315	15	3	NaN	NaN	NaN	0.030696	1	10117	10117		58.2	27.589	1	51866			12140	4431	7039	7185	9605	9605					0.009925448553985916
KPETIIHSV	9	Unmodified	_KPETIIHSV_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2952991044	2	512.295299	1022.57605	2.4267	0.0012432	-2.1859	-0.0011198	0.24084	0.00012338	512.2941160126672	18.724	0.2639	18.724	18.604	18.868	0	1314	61	0.8283535	0.036917448	0.8283535	336.25864	0	14.986145						249	12	3	NaN	NaN	NaN	0.64666	1	9471	9471		3.5698	0.78459	1	29982	+		12141	10665	7040	7186	9606	9606					0.06566029477323809
KPETIIHSV	9	Unmodified						0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.295299	1022.57605	2.4267	0.0012432	-2.1859	-0.0011198	0.24084	0.00012338	512.2941160126672	18.724	0.2639	18.724	18.604	18.868	0	1314	61	0.8283535	0.036917448	0.8283535	336.25864		14.986145	-0.0036189	-0.00034587	0.00075972	NaN	3.5698	249	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29982	+		12142	10665	7040	7186							0.06566029477323809
KPETIIHSV	9	Unmodified						0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.295299	1022.57605	1.4869	0.00076171	-1.3144	-0.00067335	0.17248	8.8361E-05	512.2946718044576	18.746	0.21601	18.731	18.636	18.852	-0.014059	1314	55	0.8283535	0.03322214	0.8268341	336.25864		13.486084	0.0036189	0.00054707	-0.00075972	NaN	3.5698	172	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27914	+		12143	10665	7040	7186							0.06566029477323809
KPGGQILA	8	Unmodified	_KPGGQILA_					0	0	0		ENST00000486151.5_1_10:49386068-49414901:-|nuORF;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4723147298	1	783.472315	782.465038	2.066	0.0016186	-0.59737	-0.00046802	1.4686	0.0011506	783.4714875105519	55.1	0.16845	55.1	55.004	55.172	0	492	154	1.3267875	0.09155059	1.3267875	270.39606	0	18.657806						281	8	4	NaN	NaN	NaN	0.84727	1	4534	4534		1.2418	0.31598	1	95830			12144	4723	7041	7187	9607	9607					0.0651043455989111
KPGGQILA	8	Unmodified						0	0	0		ENST00000486151.5_1_10:49386068-49414901:-|nuORF;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.472315	782.465038	-0.21978	-0.00017219	1.3067	0.0010237	1.0869	0.00085155	783.4729486426129	55.098	0.14405	55.097	55.025	55.169	-0.0006218	486	64	1.3303722	0.037636995	1.3288528	271.12662		7.670349	-0.0012575	0.001184	0.0010326	NaN	1.2418	173	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24390			12145	4723	7041	7187							0.0651043455989111
KPGKGGVP	8	Unmodified	_KPGKGGVP_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.4460999793	1	739.4461	738.438824	-0.2255	-0.00016675	0.36458	0.00026959	0.13907	0.00010284	739.4462195202973	55.026	0.19196	55.025	54.977	55.169	-0.0006218	555	85	1.2891023	0.05031395	1.2875829	262.98575	0	10.264404						277	9	3	NaN	NaN	NaN	0.84876	1	3822	3822		0.39566	0	1	43881			12146	2346	7042	7188	9608	9608					0.059141653884125844
KPGPGAAL	8	Unmodified	_KPGPGAAL_					0	0	0			REV__ENST00000304758.5_1_X:112075566-112083776:-|nuORF	REV__ENST00000304758.5_1_X:112075566-112083776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.4195508777999	1	710.419551	709.412274	1.0915	0.00077539	-2.3564	-0.0016741	-1.265	-0.00089867	710.4177164111497	29.063	0.14477	29.063	29.039	29.184	0	684	67	1.2116731	0.039714575	1.2116731	247.37395	0	8.108093						202	7	3	NaN	NaN	NaN	0.84876	1	3418	3418		0.39566	0	1	32492	+		12147	11671	7043	7189	9609	9609					0.04594476497072719
KPGRKYERI	9	Unmodified	_KPGRKYERI_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.89625178939997	3	382.896252	1145.66693	1.946	0.00074512	-7.9432	-0.0030414	-5.9971	-0.0022963	382.89242216469535	19.132	0.047989	19.132	19.132	19.18	0	1479	28	0.72651637	0.016716719	0.72651637	441.7425	0	10.164246						33	3	2	NaN	NaN	NaN	0.66863	1	14661	14661		1.8901	0.19164	1	1893.1			12148	1392	7044	7190	9610	9610					0.09991918245441411
KPGVGYVF	8	Unmodified	_KPGVGYVF_					0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.74217111165	2	433.742171	865.469789	1.2753	0.00055317	-1.8692	-0.00081077	-0.59389	-0.0002576	433.74139504288223	20.117	0.1201	20.117	20.093	20.213	0	1374	43	0.791392	0.02590108	0.791392	322.0279	0	10.53949						164	6	3	NaN	NaN	NaN	0.50567	1	5609	5609		30.791	6.9407	1	18778	+		12149	9377	7045	7191	9611	9611					0.03167318702662669
KPGVGYVF	8	Unmodified	_KPGVGYVF_					0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.74217111165	2	433.742171	865.469789	1.181	0.00051225	-0.95673	-0.00041497	0.22428	9.728E-05	433.74174254381506	20.14	0.09635	20.126	20.102	20.198	-0.014141	1377	46	0.7895419	0.027752638	0.78802246	321.27502	0	11.292938						126	5	3	NaN	NaN	NaN	0.62311	1	5469	5469		23.85	6.0701	1	15014	+		12150	9377	7045	7191	9612	9612					0.03167318702662669
KPGVGYVF	8	Unmodified						0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	433.742171	865.469789	1.2753	0.00055317	-1.8692	-0.00081077	-0.59389	-0.0002576	433.74139504288223	20.117	0.1201	20.117	20.093	20.213	0	1374	43	0.791392	0.02590108	0.791392	322.0279		10.53949	-0.0047203	-0.0004252	0.0016848	NaN	30.791	164	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18778	+		12151	9377	7045	7191							0.03167318702662669
KPGVGYVF	8	Unmodified						0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	433.742171	865.469789	1.181	0.00051225	-0.95673	-0.00041497	0.22428	9.728E-05	433.74174254381506	20.14	0.09635	20.126	20.102	20.198	-0.014141	1377	46	0.7895419	0.027752638	0.78802246	321.27502		11.292938	0.0047203	0.00036639	-0.0016848	NaN	30.791	126	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15014	+		12152	9377	7045	7191							0.03167318702662669
KPGYRFTST	9	Unmodified	_KPGYRFTST_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.77727352675	2	528.777274	1055.53999	2.2493	0.0011894	5.7303	0.0030301	7.9796	0.0042194	528.7802360912135	18.58	0.095936	18.58	18.484	18.58	0	1287	49	0.8449601	0.029508412	0.8449601	342.8575	0	11.973572						81	5	2	NaN	NaN	NaN	0.62619	1	10897	10897		4.4131	0.44458	1	9858			12153	4452	7046	7192	9613	9613					0.01444572300465552
KPGYRFTST	9	Unmodified						0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.777274	1055.53999	1.5845	0.00083787	6.6246	0.0035029	8.2091	0.0043408	528.7813562715421	18.554	0.14392	18.54	18.492	18.636	-0.01395	1287	49	0.8449601	0.029502094	0.84344065	342.8575		11.970978	-0.020316	0.00042658	-0.00075972	NaN	4.4131	135	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13230			12154	4452	7046	7192							0.01444572300465552
KPHSSLWMQN	10	Unmodified	_KPHSSLWMQN_					0	0	0			REV__nc|ENSG00000108389|Q9NYA4|MTMR4	REV__nc|ENSG00000108389|Q9NYA4|MTMR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.86948537890004	3	409.869485	1226.58663	1.2764	0.00052316	-0.8726	-0.00035765	0.4038	0.00016551	409.8690473786167	23.995	0.21704	23.995	23.875	24.092	0	1470	37	0.7320868	0.022275686	0.7320868	444.78058	0	13.53363						143	10	2	NaN	NaN	NaN	0.69717	1	17148	17148		4.2489	1.6884	1	16421	+		12155	9034	7047	7193	9614	9614					-0.017603111398784677
KPKKGAGVN	9	Unmodified	_KPKKGAGVN_					0	0	0			REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5468766564002	1	898.546877	897.5396	1.7907	0.001609	5.4056	0.0048572	7.1963	0.0064662	898.5518780170424	56.78	0.14416	56.78	56.756	56.9	0	204	55	1.4979934	0.03193772	1.4979934	304.6118	0	6.4944153						162	7	2	NaN	NaN	NaN	0.67989	1	6028	6028		0.92586	0.5302	1	21576	+		12156	13125	7048	7194	9615	9615					0.08673197371285823
KPKKGAGVN	9	Unmodified						0	0	0			REV__nc|ENSG00000138326|P62847|RPS24	REV__nc|ENSG00000138326|P62847|RPS24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	898.546877	897.5396	1.7907	0.001609	5.4056	0.0048572	7.1963	0.0064662	898.5518780170424	56.78	0.14416	56.78	56.756	56.9	0	204	55	1.4979934	0.03193772	1.4979934	304.6118		6.4944153	0.0011122	-0.00067267	-0.00012739	NaN	0.92586	162	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21576	+		12157	13125	7048	7194							0.08673197371285823
KPKLPAGP	8	Unmodified	_KPKLPAGP_					0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.5087002361	1	807.5087	806.501424	-0.10387	-8.3877E-05	2.4486	0.0019773	2.3448	0.0018934	807.5118339279718	56.947	0.047932	56.946	56.922	56.97	-0.00056458	426	52	1.3661768	0.030403137	1.3646574	278.28043	0	6.1929016						99	3	3	NaN	NaN	NaN	0.84692	1	4755	4755		1.4396	1.0439	1	10390	+		12158	9648	7049	7195	9616	9616					0.09043311456605352
KPKLPAGP	8	Unmodified						0	0	0			REV__nc|ENSG00000136068|O75369-5|FLNB	REV__nc|ENSG00000136068|O75369-5|FLNB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	807.5087	806.501424	-0.10387	-8.3877E-05	2.4486	0.0019773	2.3448	0.0018934	807.5118339279718	56.947	0.047932	56.946	56.922	56.97	-0.00056458	426	52	1.3661768	0.030403137	1.3646574	278.28043		6.1929016	0.010845	0.00079765	0.00013449	NaN	1.4396	99	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10390	+		12159	9648	7049	7195							0.09043311456605352
KPLLDQGHLY	10	Unmodified	_KPLLDQGHLY_					0	0	0		ENST00000368937.5_1_1:150981028-150998024:+|nuORF	ENST00000368937.5_1_1:150981028-150998024:+|nuORF	ENST00000368937.5_1_1:150981028-150998024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.2205125215667	3	395.220513	1182.63971	1.9837	0.00078399	-11.713	-0.0046293	-9.7296	-0.0038453	395.216108995684	18.46	0.095871	18.46	18.436	18.532	0	1464	55	0.73579943	0.033409894	0.73579943	447.22076	0	20.30661						67	5	2	NaN	NaN	NaN	0.76991	1	15933	15933		2.9701	1.7411	1	5218.9			12160	6635	7050	7196	9617	9617					0.055693899144444
KPMMKEFRF	9	Unmodified	_KPMMKEFRF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P937S|1|0.52|ENSG00000103512|chr16:14880066-14880066|C/T|missense_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.2121950475333	3	405.212195	1212.61476	1.5487	0.00062754	-2.0566	-0.00083334	-0.50788	-0.0002058	405.21141658211207	17.549	0.16775	17.549	17.477	17.645	0	1470	43	0.7320868	0.02598828	0.7320868	444.83752	0	15.791229						165	8	3	NaN	NaN	NaN	0.08308	1	16798	16798		38.269	23.82	1	18259			12161	1423	7051	7197	9618	9618					0.01695295515833095
KPMMKEFRF	9	Unmodified	_KPMMKEFRF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P937S|1|0.52|ENSG00000103512|chr16:14880066-14880066|C/T|missense_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.2121950475333	3	405.212195	1212.61476	2.1319	0.00086387	-4.852	-0.0019661	-2.7201	-0.0011022	405.20998855784126	18.17	0.096033	18.156	18.084	18.18	-0.01395	1470	31	0.7320868	0.018565059	0.73056734	444.83755	0	11.28067						62	5	2	NaN	NaN	NaN	0.27236	1	16123	16123		20.688	9.8262	1	6432.7			12162	1423	7051	7197	9619	9619					0.01695295515833095
KPMTMKPMKF	10	Unmodified	_KPMTMKPMKF_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.55345235069996	3	413.553452	1237.63853	1.7398	0.00071949	-2.5308	-0.0010466	-0.79105	-0.00032714	413.5527477526606	19.324	0.35993	19.324	19.132	19.492	0	1437	61	0.7524962	0.03709799	0.7524962	457.135	0	22.536682						425	16	4	NaN	NaN	NaN	0.62092	1	17472	17472		7.8039	2.1067	1	109600	+		12163	8952	7052	7198	9620	9620					0.029213929579782416
KPMTMKPMKF	10	Unmodified	_KPMTMKPMKF_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.55345235069996	3	413.553452	1237.63853	1.2697	0.00052509	-0.72073	-0.00029806	0.54898	0.00022703	413.5532731604178	19.924	0.21656	19.909	19.717	19.934	-0.014141	1434	55	0.75435036	0.033380866	0.7528309	458.2614	0	20.278625						238	10	3	NaN	NaN	NaN	0.34693	1	16738	16738		16.659	0	1	42397	+		12164	8952	7052	7198	9621	9621					0.029213929579782416
KPMTMKPMKF	10	Unmodified						0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	413.553452	1237.63853	1.7398	0.00071949	-2.5308	-0.0010466	-0.79105	-0.00032714	413.5527477526606	19.324	0.35993	19.324	19.132	19.492	0	1437	61	0.7524962	0.03709799	0.7524962	457.135		22.536682	0	0	0	NaN	7.8039	425	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109600	+		12165	8952	7052	7198							0.029213929579782416
KPNKPLEQYI	10	Unmodified	_KPNKPLEQYI_					0	0	0			REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.56780079313336	3	410.567801	1228.68157	1.6491	0.00067706	3.5494	0.0014573	5.1985	0.0021343	410.56945899333465	16.518	0.095865	16.518	16.47	16.566	0	1437	25	0.7524962	0.014834344	0.7524962	457.17166	0	9.012482						55	5	2	NaN	NaN	NaN	0.77101	1	17224	17224		2.7042	0.10474	1	3975.6	+		12166	9643	7053	7199	9622	9622					0.07637945602959917
KPPIDEEQRLW	11	Unmodified	_KPPIDEEQRLW_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-8|TNIK	REV__nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.91738116199997	3	470.917381	1409.73031	1.0168	0.00047882	6.5431	0.0030813	7.5599	0.0035601	470.9199599706888	18.098	0.048006	18.084	18.06	18.108	-0.013786	1377	52	0.7895419	0.031449556	0.78802246	478.99442	0	19.07965						66	3	2	NaN	NaN	NaN	0.77278	1	19195	19195		0.43218	0	1	8913.9	+		12167	10091	7054	7200	9623	9623					0.04183814172029088
KPQSKELTL	9	Unmodified	_KPQSKELTL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.3084064796501	2	522.308406	1042.60226	1.8681	0.00097574	-1.4614	-0.00076333	0.40668	0.00021241	522.3074114268464	13.925	0.16802	13.925	13.901	14.069	0	1218	37	0.8873258	0.022081137	0.8873258	360.1057	0	8.961243						124	8	2	NaN	NaN	NaN	0.23499	1	10336	10336		23.086	7.2639	1	11079			12168	1329	7055	7201	9624	9624					0.08266298648823067
KPQSKELTL	9	Unmodified	_KPQSKELTL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.3084064796501	2	522.308406	1042.60226	1.5204	0.00079411	-1.2196	-0.00063703	0.30073	0.00015707	522.3079117590531	14.021	0.19186	14.01	13.938	14.13	-0.010672	1218	34	0.8873258	0.020237803	0.8858064	360.1057	0	8.213135						111	9	3	NaN	NaN	NaN	0.65696	1	10133	10133		2.8895	0.10428	1	9117.9			12169	1329	7055	7201	9625	9625					0.08266298648823067
KPRGRPKRG	9	Unmodified	_KPRGRPKRG_					0	0	0			REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.6595554238	1	1051.65956	1050.65228	1.5198	0.0015983	-10.275	-0.010805	-8.7548	-0.0092071	1051.6491737312147	37.482	0.072285	37.482	37.458	37.53	0	237	43	1.4784646	0.024869442	1.4784646	299.97833	0	5.0459595						81	4	2	NaN	NaN	NaN	0.67989	1	10667	10667		0.92586	0	1	6925.3	+		12170	9680	7056	7202	9626	9626					0.12897890887961694
KPRGRPKRG	9	Unmodified						0	0	0			REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1051.65956	1050.65228	1.5198	0.0015983	-10.275	-0.010805	-8.7548	-0.0092071	1051.6491737312147	37.482	0.072285	37.482	37.458	37.53	0	237	43	1.4784646	0.024869442	1.4784646	299.97833		5.0459595	-0.00018681	-0.00010681	0.00075972	NaN	0.92586	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6925.3	+		12171	9680	7056	7202							0.12897890887961694
KPRGRPKRG	9	Unmodified						0	0	0			REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	REV__ENST00000430198.2_1_4:73964637-73964859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1051.65956	1050.65228	1.4759	0.0015521	-10.087	-0.010608	-8.611	-0.0090558	1051.6485076474687	37.479	0.09639	37.482	37.458	37.555	0.0028229	237	46	1.4784646	0.026641488	1.4769452	299.97833		5.4055176	0.00018681	9.0614E-05	-0.00075972	NaN	0.92586	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8139.7	+		12172	9680	7056	7202							0.12897890887961694
KPSKPPSPA	9	Unmodified	_KPSKPPSPA_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.76363483525	2	454.763635	907.512717	2.092	0.00095138	-2.774	-0.0012615	-0.68198	-0.00031014	454.7614636080045	32.682	0.072395	32.679	32.679	32.751	-0.0031052	1377	31	0.7895419	0.018502772	0.78802246	321.04266	0	7.52359						35	4	2	NaN	NaN	NaN	0.59509	1	6079	6079		5.6942	0.2283	1	1894	+		12173	11003	7057	7203	9627	9627					0.055260887600866226
KPSLEADKP	9	Unmodified	_KPSLEADKP_					0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.77165683259994	2	492.771657	983.528761	1.7464	0.00086058	-3.2285	-0.0015909	-1.4821	-0.00073036	492.7699355302458	21.705	0.14454	21.705	21.657	21.802	0	1305	61	0.83389086	0.0369215	0.83389086	338.68484	0	14.9956665						151	7	3	NaN	NaN	NaN	0.63698	1	8008	8008		3.9685	0	1	18025			12174	4413	7058	7204	9628	9628					0.036337502063247484
KPSLEADKP	9	Unmodified						0	0	0		NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.771657	983.528761	0.94759	0.00046695	-3.2287	-0.001591	-2.2811	-0.0011241	492.7709754465303	21.681	0.1204	21.667	21.643	21.764	-0.013895	1305	61	0.83389086	0.0369215	0.8323714	338.68484		14.9956665	-0.019056	-8.3246E-08	-0.00075972	NaN	3.9685	167	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19361			12175	4413	7058	7204							0.036337502063247484
KPSMPSRP	8	Unmodified	_KPSMPSRP_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.4767481807002	1	899.476748	898.469472	1.8927	0.0017025	2.3213	0.002088	4.2141	0.0037904	899.4806124212116	53.362	0.072002	53.362	53.314	53.386	0	330	37	1.4233059	0.021384716	1.4233059	289.41983	0	4.3484497						69	4	2	NaN	NaN	NaN	0.84606	1	6040	6040		1.9246	0.22244	1	4273.3			12176	5597	7059	7205	9629	9629					0.016175757111682287
KPSTADWKE	9	Unmodified	_KPSTADWKE_					0	0	0			REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2667386302	2	531.266739	1060.51892	1.1644	0.0006186	-2.149	-0.0011417	-0.98463	-0.0005231	531.2653266145537	30.825	0.096531	30.825	30.753	30.849	0	1284	52	0.8468043	0.031344235	0.8468043	343.58508	0	12.717712						86	5	2	NaN	NaN	NaN	0.51576	1	11116	11116		8.962	2.0988	1	8698.1	+		12177	10730	7060	7206	9630	9630					-0.008914377990549838
KPTRRSLNRL	10	Unmodified	_KPTRRSLNRL_					0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.2580721107	3	414.258072	1239.75239	1.5522	0.00064302	-9.5394	-0.0039518	-7.9872	-0.0033088	414.254307069804	20.285	0.048153	20.271	20.246	20.295	-0.014141	1404	37	0.77288127	0.022225022	0.7713618	469.50998	0	13.501221						46	3	2	NaN	NaN	NaN	0.75556	1	16790	16790		4.2489	0.65435	1	5726.4	+		12178	8434	7061	7207	9631	9631					0.1421008343113499
KPTRRSLNRL	10	Unmodified						0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	414.258072	1239.75239	1.5573	0.00064513	-9.5241	-0.0039454	-7.9668	-0.0033003	414.254370266519	20.237	0.048065	20.237	20.213	20.261	0	1401	37	0.77473325	0.022225022	0.77473325	470.635		13.501221	-0.016874	1.4671E-05	0.0016857	NaN	4.2489	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3891.1	+		12179	8434	7061	7207							0.1421008343113499
KPTRRSLNRL	10	Unmodified						0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	414.258072	1239.75239	1.5522	0.00064302	-9.5394	-0.0039518	-7.9872	-0.0033088	414.254307069804	20.285	0.048153	20.271	20.246	20.295	-0.014141	1404	37	0.77288127	0.022225022	0.7713618	469.50998		13.501221	0.016874	-4.4023E-06	-0.0016857	NaN	4.2489	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5726.4	+		12180	8434	7061	7207							0.1421008343113499
KPVGCAKL	8	Unmodified	_KPVGCAKL_					0	0	0			REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.4807709261	1	815.480771	814.473494	2.202	0.0017957	-2.4642	-0.0020095	-0.26218	-0.0002138	815.4779890717275	56.037	0.144	56.037	56.013	56.157	0	477	88	1.3357477	0.051980495	1.3357477	272.03766	0	10.586304						240	7	4	NaN	NaN	NaN	0.84887	1	4949	4949		0.32989	0.054495	1	56971	+		12181	9070	7062	7208	9632	9632					0.05883665204862609
KPWDKDAWEIH	11	Unmodified	_KPWDKDAWEIH_					0	0	0		LYN|p.P243H|1|0.41|ENSG00000254087|chr8:55953922-55953922|C/A|missense_variant	LYN|p.P243H|1|0.41|ENSG00000254087|chr8:55953922-55953922|C/A|missense_variant	LYN|p.P243H|1|0.41|ENSG00000254087|chr8:55953922-55953922|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.8515011023501	2	712.851501	1423.68845	0.96949	0.0006911	8.0546	0.0057417	9.0241	0.0064329	712.857651154776	32.611	0.096558	32.611	32.587	32.683	0	1008	52	1.0156195	0.031038046	1.0156195	410.73022	0	12.552185						182	5	4	NaN	NaN	NaN	0.67772	1	20240	20240		8.9191	1.9347	1	18338			12182	7869	7063	7209	9633	9633					-0.006447415164757331
KPWPQAWK	8	Unmodified	_KPWPQAWK_					0	0	0			REV__ENST00000487413.1_1_3:50453473-50541058:-|nuORF	REV__ENST00000487413.1_1_3:50453473-50541058:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.78744428255	2	520.787444	1039.56034	1.1033	0.00057457	7.666	0.0039924	8.7693	0.0045669	520.7915245383579	29.762	0.14478	29.755	29.707	29.852	-0.0070667	1293	79	0.84127116	0.04793048	0.8397517	341.42822	0	19.452515						151	7	2	NaN	NaN	NaN	0.84727	1	9990	9990		1.2418	0	1	13421	+		12183	12432	7064	7210	9634	9634					0.04213787750927622
KPYDDSRLLL	10	Unmodified	_KPYDDSRLLL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3376952353501	2	610.337695	1218.66084	0.87033	0.00053119	-0.31808	-0.00019414	0.55225	0.00033706	610.3378635463177	20.501	0.16828	20.501	20.405	20.573	0	1146	58	0.93142134	0.034869432	0.93142134	377.2885	0	14.124451						161	8	3	NaN	NaN	NaN	0.54515	1	16957	16957		17.582	7.8358	1	15209			12184	13662	7065	7211	9635	9635					0.06025355223300721
KPYDDSRLLL	10	Unmodified	_KPYDDSRLLL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3376952353501	2	610.337695	1218.66084	0.76962	0.00046973	-1.0335	-0.00063081	-0.26392	-0.00016108	610.3368905897863	20.549	0.12041	20.535	20.511	20.632	-0.014141	1146	52	0.93142134	0.031195581	0.9299019	377.2885	0	12.636353						142	6	3	NaN	NaN	NaN	0.69558	1	16275	16275		8.3538	1.9238	1	12947			12185	13662	7065	7211	9636	9636					0.06025355223300721
KPYHKPHLE	9	Unmodified	_KPYHKPHLE_					0	0	0			REV__FOXN4|p.F428Lfs*11|1|0.11|ENSG00000139445|chr12:109281417-109281417|G/-|frameshift_variant	REV__FOXN4|p.F428Lfs*11|1|0.11|ENSG00000139445|chr12:109281417-109281417|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8141903493	2	574.81419	1147.61383	1.2109	0.00069602	-2.2912	-0.001317	-1.0804	-0.00062101	574.8131595818185	14.237	0.095779	14.225	14.154	14.249	-0.011218	1224	37	0.883646	0.022081137	0.88212657	358.18433	0	8.950562						96	5	2	NaN	NaN	NaN	0.39244	1	14238	14238		14.042	0.57854	1	10707	+		12186	9770	7066	7212	9637	9637					0.04592540462795114
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8267664083	2	562.826766	1123.63898	1.8124	0.0010201	-1.2245	-0.0006892	0.58785	0.00033086	562.8263145796111	20.501	0.19246	20.501	20.453	20.646	0	1191	73	0.90387505	0.044105053	0.90387505	366.4769	0	17.882446						410	9	5	NaN	NaN	NaN	6.3027E-18	1	13845	13845		158.11	82.415	1	163450			12187	778	7067	7213	9638	9638					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.5536030944	3	375.553603	1123.63898	1.292	0.00048521	-0.33619	-0.00012626	0.9558	0.00035895	375.5534241201497	20.501	0.096142	20.501	20.453	20.549	0	1539	43	0.68933374	0.02605325	0.68933374	419.2319	0	15.844818						74	5	2	NaN	NaN	NaN	0.16171	1	13846	13846		19.336	2.138	1	7953.1			12188	778	7067	7213	9639	9639					0.08210595265359188
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8267664083	2	562.826766	1123.63898	1.4446	0.00081304	-2.7699	-0.001559	-1.3253	-0.00074594	562.8248413285456	20.622	0.36122	20.608	20.463	20.825	-0.014088	1191	94	0.90387505	0.056966007	0.9023556	366.47693	0	23.096924						660	16	3	NaN	NaN	NaN	0.023828	1	13414	13414		67.154	29.852	1	194650			12189	778	7067	7213	9640	9640					0.08210595265359188
KQALQRYS	8	Unmodified	_KQALQRYS_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.27744070225	2	497.277441	992.540328	1.372	0.00068225	2.4922	0.0012393	3.8642	0.0019216	497.2784039772022	20.501	0.096142	20.501	20.453	20.549	0	1542	55	0.6874725	0.033508003	0.6874725	279.18204	0	13.607574						103	5	2	NaN	NaN	NaN	0.49126	1	8324	8324		31.561	3.7722	1	12242			12190	1210	7068	7214	9641	9641					0.04375992020322883
KQELALEVI	9	Unmodified	_KQELALEVI_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.8107819931	2	521.810782	1041.60701	1.2195	0.00063636	-1.3464	-0.00070255	-0.12686	-6.6196E-05	521.8100726103582	22.404	0.072147	22.39	22.342	22.414	-0.013733	1254	82	0.8652351	0.04977131	0.86371565	351.14496	0	20.199066						133	4	4	NaN	NaN	NaN	0.18779	1	10090	10090		26.115	2.9974	1	21114	+		12191	9275	7069	7215	9642	9642					0.0878718279154782
KQHHLGAYIY	10	Unmodified	_KQHHLGAYIY_					0	0	0			REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF	REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.5523736296	3	410.552374	1228.63529	1.9576	0.00080369	-0.97018	-0.00039831	0.98739	0.00040537	410.55187183567017	25.853	0.048241	25.853	25.853	25.901	0	1377	28	0.7895419	0.01665157	0.7895419	479.67865	0	10.116516						42	3	2	NaN	NaN	NaN	0.77318	1	17218	17218		0.81135	0.095235	1	3505.6	+		12192	8583	7070	7216	9643	9643					0.030119254915234706
KQLAVYEEF	9	Unmodified	_KQLAVYEEF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7925892399501	2	563.792589	1125.57063	2.0719	0.0011681	-2.1591	-0.0012173	-0.087199	-4.9162E-05	563.7912571852303	21.946	0.14456	21.946	21.898	22.043	0	1221	70	0.885486	0.042315364	0.885486	359.0136	0	17.156433						249	7	3	NaN	NaN	NaN	0.17328	1	13909	13909		37.302	16.747	1	50064			12193	2445	7071	7217	9644	9644					0.012863058948596517
KQLAVYEEF	9	Unmodified	_KQLAVYEEF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7925892399501	2	563.792589	1125.57063	1.2646	0.00071296	-1.5662	-0.000883	-0.3016	-0.00017004	563.7916996292253	21.946	0.1445	21.932	21.884	22.028	-0.013895	1221	58	0.885486	0.034952402	0.88396657	359.0136	0	14.171173						215	7	3	NaN	NaN	NaN	0.3106	1	13479	13479		26.115	14.567	1	49950			12194	2445	7071	7217	9645	9645					0.012863058948596517
KQLCQVCAEH	10	Unmodified	_KQLCQVCAEH_					0	0	0			REV__ENST00000468457.1_1_1:93583908-93584959:+|nuORF	REV__ENST00000468457.1_1_1:93583908-93584959:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7733506293	2	579.773351	1157.53215	1.3731	0.00079609	-11.1	-0.0064357	-9.7273	-0.0056396	579.7680511964121	34.227	0.14481	34.225	34.153	34.298	-0.0012474	1215	49	0.8891654	0.02942884	0.88764596	360.38495	0	11.927704						85	7	2	NaN	NaN	NaN	0.76892	1	14562	14562		3.2116	0.7501	1	6949.4	+		12195	9856	7072	7218	9646	9646					-0.040316462829650845
KQLEPTTHPM	10	Unmodified	_KQLEPTTHPM_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.3027981729999	2	591.302798	1180.59104	1.7483	0.0010338	-11.402	-0.0067423	-9.6541	-0.0057085	591.2953067610594	23.465	0.21698	23.465	23.417	23.634	0	1176	73	0.9130621	0.044105053	0.9130621	369.98535	0	17.871979						262	10	3	NaN	NaN	NaN	0.71736	1	15846	15846		6.8632	0.94343	1	33244	+		12196	8727	7073	7219	9647	9647					0.007971532829969874
KQLEPTTHPM	10	Unmodified						0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.302798	1180.59104	1.7483	0.0010338	-11.402	-0.0067423	-9.6541	-0.0057085	591.2953067610594	23.465	0.21698	23.465	23.417	23.634	0	1176	73	0.9130621	0.044105053	0.9130621	369.98535		17.871979	0.055127	0.00048314	0.0025968	NaN	6.8632	262	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33244	+		12197	8727	7073	7219							0.007971532829969874
KQLEPTTHPM	10	Unmodified						0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.302798	1180.59104	1.6847	0.00099617	-12.688	-0.0075026	-11.003	-0.0065064	591.2970295808885	23.368	0.072388	23.355	23.307	23.379	-0.013294	1182	61	0.9093879	0.03674233	0.90786844	368.4965		14.888489	-0.055127	-0.0010375	-0.0025968	NaN	6.8632	100	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7412.7	+		12198	8727	7073	7219							0.007971532829969874
KQLKGSSHARE	11	Unmodified	_KQLKGSSHARE_					0	0	0			REV__SKIL|p.K440R|1|0.11|ENSG00000136603|chr3:170384655-170384655|A/G|missense_variant	REV__SKIL|p.K440R|1|0.11|ENSG00000136603|chr3:170384655-170384655|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8414677323	2	620.841468	1239.66838	1.8764	0.001165	-11.276	-0.0070008	-9.4	-0.0058359	620.8342426583472	13.589	0.1441	13.589	13.565	13.709	0	1191	43	0.90387505	0.025727928	0.90387505	366.06094	0	10.419586						163	7	3	NaN	NaN	NaN	0.69801	1	17528	17528		7.5876	1.8934	1	19152	+		12199	13312	7074	7220	9648	9648					0.05813507543552987
KQLKGSSHARE	11	Unmodified						0	0	0			REV__SKIL|p.K440R|1|0.11|ENSG00000136603|chr3:170384655-170384655|A/G|missense_variant	REV__SKIL|p.K440R|1|0.11|ENSG00000136603|chr3:170384655-170384655|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.841468	1239.66838	1.8764	0.001165	-11.276	-0.0070008	-9.4	-0.0058359	620.8342426583472	13.589	0.1441	13.589	13.565	13.709	0	1191	43	0.90387505	0.025727928	0.90387505	366.06094		10.419586	-0.019241	-0.0017234	0.00075972	NaN	7.5876	163	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19152	+		12200	13312	7074	7220							0.05813507543552987
KQLLEVEL	8	Unmodified	_KQLLEVEL_					0	0	0		ENST00000301781.10_1_11:62457841-62462085:-|nuORF;nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	ENST00000301781.10_1_11:62457841-62462085:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5771737318001	1	971.577174	970.569897	1.4703	0.0014285	0.26428	0.00025676	1.7346	0.0016853	971.5772308930043	30.753	0.14481	30.753	30.704	30.849	0	225	76	1.4855686	0.04439783	1.4855686	301.74182	0	9.017883						285	7	3	NaN	NaN	NaN	0.202	1	7636	7636		49.833	0	1	68296			12201	4584	7075	7221	9649	9649					0.08343511245811897
KQMENHQL	8	Unmodified	_KQMENHQL_					0	0	0		nc|ENSG00000168916|Q9ULD9-2|ZNF608;ENSG00000168916|ENST00000513986|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2531083262	2	514.253108	1026.49166	1.2649	0.00065045	2.0517	0.0010551	3.3165	0.0017055	514.2542212401427	14.452	0.11981	14.441	14.417	14.537	-0.011218	1299	37	0.8375814	0.02214086	0.83606195	339.9873	0	8.987335						82	6	2	NaN	NaN	NaN	0.76406	1	9435	9435		14.042	2.4931	1	7358.9			12202	4642	7076	7222	9650	9650					-0.020522446110817327
KQMIEKRLE	9	Unmodified	_KQMIEKRLE_					0	0	0			REV__ENST00000461882.1_1_7:76871694-76888407:+|nuORF	REV__ENST00000461882.1_1_7:76871694-76888407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8342654769	2	587.834265	1173.65398	1.5531	0.00091295	-10.437	-0.0061351	-8.8838	-0.0052222	587.8274751090454	21.296	0.072247	21.296	21.272	21.344	0	1152	46	0.92775106	0.027525544	0.92775106	375.9632	0	11.15448						105	4	3	NaN	NaN	NaN	0.39244	1	15614	15614		14.042	5.0796	1	7304.8	+		12203	8181	7077	7223	9651	9651					0.07409719071051768
KQMIEKRLE	9	Unmodified						0	0	0			REV__ENST00000461882.1_1_7:76871694-76888407:+|nuORF	REV__ENST00000461882.1_1_7:76871694-76888407:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	587.834265	1173.65398	1.5531	0.00091295	-10.437	-0.0061351	-8.8838	-0.0052222	587.8274751090454	21.296	0.072247	21.296	21.272	21.344	0	1152	46	0.92775106	0.027525544	0.92775106	375.9632		11.15448	0	0	0	NaN	14.042	105	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7304.8	+		12204	8181	7077	7223							0.07409719071051768
KQNLTCKTQ	9	Unmodified	_KQNLTCKTQ_					0	0	0		ENST00000392062.6_1_2:227700745-227704239:+|nuORF;ENST00000539613.5_1_2:227700803-227704239:+|nuORF	ENST00000392062.6_1_2:227700745-227704239:+|nuORF	ENST00000392062.6_1_2:227700745-227704239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2818657656501	2	532.281866	1062.54918	1.0321	0.00054937	-0.7487	-0.00039852	0.28341	0.00015085	532.2817082239515	20.357	0.14453	20.343	20.271	20.415	-0.014141	1209	115	0.892844	0.06996906	0.8913246	362.2565	0	28.388763						269	7	2	NaN	NaN	NaN	0.18779	1	10985	10985		26.115	9.5308	1	83906			12205	6752	7078	7224	9652	9652					0.02040597594486826
KQPEDYFYL	9	Unmodified	_KQPEDYFYL_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	MYO9B-ABHD8|1|fusion;ENSG00000099331|ENST00000682292|MYO9B	MYO9B-ABHD8|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.790046551	2	601.790047	1201.56554	1.9222	0.0011567	0.50712	0.00030518	2.4293	0.0014619	601.7905475721305	25.419	0.21714	25.419	25.322	25.539	0	1176	130	0.9130621	0.07895774	0.9130621	369.91068	0	31.988312						759	10	3	NaN	NaN	NaN	0.089764	1	16517	16517		37.302	13.968	1	172030			12206	7890;1153	7079	7225	9653	9653					-0.02717997967761221
KQPEDYFYL	9	Unmodified	_KQPEDYFYL_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	MYO9B-ABHD8|1|fusion;ENSG00000099331|ENST00000682292|MYO9B	MYO9B-ABHD8|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.790046551	2	601.790047	1201.56554	1.7433	0.0010491	0.91893	0.00055301	2.6622	0.0016021	601.7906222962418	25.419	0.21715	25.407	25.334	25.551	-0.012011	1179	127	0.9112251	0.07713395	0.90970564	369.16644	0	31.24945						768	10	3	NaN	NaN	NaN	0.12328	1	15871	15871		32.453	1.8426	1	169770			12207	7890;1153	7079	7225	9654	9654					-0.02717997967761221
KQPEEYHYL	9	Unmodified	_KQPEEYHYL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-2|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-5|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.7931205562	2	603.793121	1205.57169	1.383	0.00083506	-1.6009	-0.0009666	-0.21785	-0.00013154	603.7919211872269	15.63	0.19209	15.63	15.582	15.774	0	1173	61	0.91489893	0.036746264	0.91489893	370.64087	0	14.886536						145	9	2	NaN	NaN	NaN	0.16171	1	16622	16622		27.789	15.74	1	10507			12208	7613	7080	7226	9655	9655					-0.022874797362419486
KQPIAYFFL	9	Unmodified	_KQPIAYFFL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8184100599501	2	563.81841	1125.62227	2.105	0.0011868	3.1552	0.0017789	5.2602	0.0029658	563.8208873351333	30.101	0.21724	30.101	30.029	30.246	0	1212	61	0.8910048	0.03678602	0.8910048	361.25095	0	14.914581						236	8	3	NaN	NaN	NaN	0.030391	1	13923	13923		58.599	25.174	1	29690			12209	5926	7081	7227	9656	9656					0.06448094379425129
KQPIAYFFL	9	Unmodified	_KQPIAYFFL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8184100599501	2	563.81841	1125.62227	0.99071	0.00055858	4.1815	0.0023576	5.1723	0.0029162	563.8216702484186	30.124	0.19306	30.118	30.045	30.238	-0.0064106	1209	64	0.892844	0.03861493	0.8913246	361.9966	0	15.656097						236	9	3	NaN	NaN	NaN	0.29681	1	13491	13491		19.118	2.7017	1	36292			12210	5926	7081	7227	9657	9657					0.06448094379425129
KQPRTIVIQY	10	Unmodified	_KQPRTIVIQY_					0	0	0			REV__ENSG00000156689|ENST00000287275|GLYATL2	REV__ENSG00000156689|ENST00000287275|GLYATL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.3693297147502	2	623.36933	1244.72411	1.688	0.0010523	-0.53066	-0.00033079	1.1574	0.00072146	623.3693206977415	16.662	0.072073	16.662	16.638	16.71	0	1137	43	0.9369253	0.025683582	0.9369253	379.42896	0	10.401154						65	4	2	NaN	NaN	NaN	0.7344	1	17637	17637		2.3381	0	1	5100.1	+		12211	10131	7082	7228	9658	9658					0.11153340731198114
KQQELVQKEE	10	Unmodified	_KQQELVQKEE_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.2261032803	3	420.226103	1257.65648	1.626	0.00068329	-4.4957	-0.0018892	-2.8697	-0.0012059	420.2241288948544	17.714	0.095886	17.7	17.652	17.748	-0.013784	1425	73	0.7599118	0.04451269	0.75839233	461.55896	0	27.036346						107	5	3	NaN	NaN	NaN	0.75466	1	17185	17185		3.5945	1.7443	1	9585.2			12212	1209	7083	7229	9659	9659					0.037958460097115676
KQQKLWHLF	9	Unmodified	_KQQKLWHLF_					0	0	0		nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.90474727906667	3	409.904747	1226.69241	1.1905	0.00048798	-3.0745	-0.0012602	-1.884	-0.00077226	409.9035436879711	20.838	0.31302	20.838	20.766	21.079	0	1458	49	0.7395112	0.029688	0.7395112	449.2909	0	18.036987						269	14	3	NaN	NaN	NaN	0.46215	1	17159	17159		11.17	2.8928	1	39733			12213	5281	7084	7230	9660	9660					0.08813392767888217
KQRTMSRNV	9	Unmodified	_KQRTMSRNV_					0	0	0			REV__HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|10|1|anti-sense	REV__HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|10|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.3062065292002	2	560.306207	1118.59786	3.0669	0.0017184	4.4874	0.0025143	7.5543	0.0042327	560.3091228698498	16.347	0.095901	16.334	16.286	16.382	-0.012995	1221	25	0.885486	0.014717579	0.88396657	359.04065	0	5.96756						38	5	2	NaN	NaN	NaN	0.6532	1	13222	13222		3.2116	0	1	2171.5	+		12214	13014	7085	7231	9661	9661					0.04330510954264355
KQTELFAHF	9	Unmodified	_KQTELFAHF_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7929235909501	2	560.792924	1119.57129	1.5023	0.00084251	-2.3633	-0.0013253	-0.86093	-0.0004828	560.7916048740846	20.164	0.12041	20.15	20.102	20.222	-0.014143	1230	46	0.8799654	0.027608931	0.878446	356.79846	0	11.19455						120	6	3	NaN	NaN	NaN	0.33629	1	13255	13255		16.584	2.1591	1	13582			12215	3799	7086	7232	9662	9662					0.01629145334572968
KQTKLLEM	8	Unmodified	_KQTKLLEM_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;ENST00000527451.1_1_11:130773148-130776010:-|nuORF;ENST00000580193.1_1_18:14630000-14630792:-|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5652288370001	1	990.565229	989.557952	1.909	0.001891	1.0632	0.0010532	2.9722	0.0029442	990.5655115703665	34.781	0.072327	34.78	34.756	34.828	-0.0006485	255	49	1.4678029	0.028437257	1.4662834	298.05325	0	5.774475						64	4	2	NaN	NaN	NaN	0.81756	1	8040	8040		6.8632	0	1	5139.6			12216	2261	7087	7233	9663	9663					0.0627557123096949
KQWPLFFIV	9	Unmodified	_KQWPLFFIV_					0	0	0			REV__ENSG00000115159|ENST00000438166|GPD2	REV__ENSG00000115159|ENST00000438166|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3420523317501	2	589.342052	1176.66955	1.3713	0.00080817	-3.2269	-0.0019017	-1.8556	-0.0010936	589.3402367763094	31.887	0.26548	31.887	31.863	32.128	0	1110	178	0.95342636	0.10806906	0.95342636	386.35632	0	43.792725						808	12	3	NaN	NaN	NaN	0.68748	1	15722	15722		0.27539	0	1	132790	+		12217	9180	7088	7234	9664	9664					0.08828373650408139
KQWPLFFIV	9	Unmodified						0	0	0			REV__ENSG00000115159|ENST00000438166|GPD2	REV__ENSG00000115159|ENST00000438166|GPD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.342052	1176.66955	1.3713	0.00080817	-3.2269	-0.0019017	-1.8556	-0.0010936	589.3402367763094	31.887	0.26548	31.887	31.863	32.128	0	1110	178	0.95342636	0.10806906	0.95342636	386.35632		43.792725	-0.021729	-0.0007769	-0.0010726	NaN	0.27539	808	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132790	+		12218	9180	7088	7234							0.08828373650408139
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.75346407945	2	528.753464	1055.49238	2.4087	0.0012736	-1.2855	-0.00067971	1.1232	0.00059388	528.7524399447907	18.82	0.38391	18.82	18.724	19.108	0	1281	106	0.84864825	0.064560235	0.84864825	344.35428	0	26.196503						926	17	5	NaN	NaN	NaN	0.01452	1	10871	10871		79.199	34.56	1	276590			12219	4377	7089	7235	9665	9665					-0.03315126690381476
KQYADVEGF	9	Unmodified	_KQYADVEGF_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75346407945	2	528.753464	1055.49238	1.7413	0.0009207	-0.90599	-0.00047905	0.83527	0.00044165	528.7527903965872	18.842	0.36033	18.828	18.756	19.116	-0.014059	1281	109	0.84864825	0.06640118	0.8471288	344.35428	0	26.943512						911	16	4	NaN	NaN	NaN	0.011206	1	10641	10641		89.256	51.953	1	284570			12220	4377	7089	7235	9666	9666					-0.03315126690381476
KRAAGICL	8	Unmodified	_KRAAGICL_					0	0	0		ENST00000510377.5_1_4:144107139-144107199:+|nuORF	ENST00000510377.5_1_4:144107139-144107199:+|nuORF	ENST00000510377.5_1_4:144107139-144107199:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.4869189365	1	831.486919	830.479642	-0.37395	-0.00031093	5.1398	0.0042737	4.7659	0.0039628	831.4906118551758	58.386	0.072002	58.386	58.338	58.41	-0.00048447	429	49	1.3643885	0.02861321	1.362869	277.78174	0	5.8255005						93	4	2	NaN	NaN	NaN	0.84692	1	5026	5026		1.4396	0	1	9014.9			12221	7350	7090	7236	9667	9667					0.05762183436388568
KRCWERLR	8	Unmodified	_KRCWERLR_					0	0	0		chr2:20201044-20203087|148|120.95|0.97|6.96|-|0|None,SDC1|1	chr2:20201044-20203087|148|120.95|0.97|6.96|-|0|None,SDC1|1	chr2:20201044-20203087|148|120.95|0.97|6.96|-|0|None,SDC1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.8192841147	2	573.819284	1145.62402	1.8526	0.0010631	0.93489	0.00053646	2.7875	0.0015995	573.8195204805735	19.828	0.048033	19.828	19.804	19.852	0	1530	34	0.6949163	0.020464838	0.6949163	281.68887	0	8.295563						56	3	2	NaN	NaN	NaN	0.84887	1	14657	14657		0.32989	0.054495	1	6923.5			12222	141	7091	7237	9668	9668					0.05702824916374993
KRDQYLRVQK	10	Unmodified	_KRDQYLRVQK_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.26148222246667	3	445.261482	1332.76262	1.8987	0.00084541	-5.6188	-0.0025018	-3.7201	-0.0016564	445.2591636090529	16.227	0.11989	16.214	16.142	16.262	-0.012995	1422	40	0.7617651	0.024091423	0.7602457	462.40186	0	14.62381						76	6	2	NaN	NaN	NaN	0.71345	1	18437	18437		7.1304	0.98976	1	7596.2			12223	4314	7092	7238	9669	9669					0.10954646365689769
KREAKGELYW	10	Unmodified	_KREAKGELYW_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.3433119295001	2	640.343312	1278.67207	1.6277	0.0010423	4.2708	0.0027347	5.8985	0.003777	640.3474249188322	37.506	0.2167	37.506	37.434	37.65	0	1239	112	0.87444305	0.068102	0.87444305	354.02222	0	27.57138						1030	10	7	NaN	NaN	NaN	0.70538	1	18398	18398		6.2502	0.55606	1	485390			12224	6131	7093	7239	9670	9670					0.043881773174234695
KREAKGELYW	10	Unmodified						0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.343312	1278.67207	2.1648	0.0013862	4.3231	0.0027683	6.4879	0.0041545	640.3472141878127	37.504	0.19268	37.506	37.434	37.627	0.0028229	1236	115	0.876284	0.06993121	0.8747646	354.76755		28.311981	0.00015833	2.5867E-05	0.00016078	NaN	6.2502	999	9	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446630			12225	6131	7093	7239							0.043881773174234695
KREDVLMVTF	10	Unmodified	_KREDVLMVTF_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.22515768979997	3	413.225158	1236.65364	0.99296	0.00041032	7.0198	0.0029008	8.0128	0.0033111	413.2279635981249	12.58	0.12001	12.58	12.556	12.676	0	1419	31	0.76361835	0.018530905	0.76361835	463.89563	0	11.257446						64	6	2	NaN	NaN	NaN	0.71817	1	17449	17449		6.8076	0.19016	1	5548.1	+		12226	9265	7094	7240	9671	9671					0.04478299351194437
KRGGGGGS	8	Unmodified	_KRGGGGGS_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3532622266001	1	675.353262	674.345986	0.70806	0.00047819	-1.791	-0.0012096	-1.083	-0.00073138	675.353014825818	27.928	0.096558	27.919	27.846	27.943	-0.009552	744	118	1.1755381	0.0705353	1.1740186	240.2329	0	14.414581						239	5	2	NaN	NaN	NaN	0.84727	1	2621	2621		1.2418	0	1	26024			12227	2452	7095	7241	9672	9672					-0.00421339344950411
KRGGVGGG	8	Unmodified	_KRGGVGGG_					0	0	0			REV__ENST00000282928.4_1_3:147131727-147131955:+|nuORF	REV__ENST00000282928.4_1_3:147131727-147131955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3896477329002	1	687.389648	686.382371	1.518	0.0010434	3.8432	0.0026418	5.3612	0.0036852	687.3924266943428	32.706	0.2413	32.703	32.631	32.872	-0.0031052	639	169	1.2387238	0.101070285	1.2372043	253.0572	0	20.647507						667	11	4	NaN	NaN	NaN	0.84887	1	2880	2880		0.32989	0	1	304960	+		12228	11608	7096	7242	9673	9673					0.026635375517685134
KRIGLKAI	8	Unmodified	_KRIGLKAI_					0	0	0			REV__tr|U7SIR4|U7SIR4_FUSNUSmallribosomalsubunitproteinuS15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsOPE=3SV=1	REV__tr|U7SIR4|U7SIR4_FUSNUSmallribosomalsubunitproteinuS15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsOPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.6196476690001	1	898.619648	897.612371	-0.22152	-0.00019906	-9.1452	-0.0082181	-9.3667	-0.0084171	898.6111205772982	59.058	0.16806	59.058	58.962	59.13	-0.00045776	264	70	1.4624695	0.040898085	1.46095	297.38782	0	8.316467						336	8	3	NaN	NaN	NaN	0.84692	1	5921	5921		1.4396	0	1	62666	+		12229	13394	7097	7243	9674	9674					0.1594695116469893
KRINTEWTHL	10	Unmodified	_KRINTEWTHL_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3542109668001	2	649.354211	1296.69387	1.1456	0.00074391	-4.0764	-0.002647	-2.9308	-0.0019031	649.3526186332978	35.046	0.21722	35.046	34.974	35.191	-4.5776E-05	1224	88	0.883646	0.053331077	0.88212657	357.69495	0	21.588135						588	10	5	NaN	NaN	NaN	0.76548	1	17885	17885		3.5698	0.35817	1	87195			12230	13674	7098	7244	9675	9675					0.0573898206598642
KRKHDLHKM	9	Unmodified	_KRKHDLHKM_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.22923650356665	3	398.229237	1191.66588	1.4747	0.00058726	-2.1146	-0.00084209	-0.6399	-0.00025483	398.2283202841201	25.129	0.096457	25.117	25.069	25.165	-0.012011	1428	49	0.7580582	0.029655814	0.75653875	460.70947	0	18.023315						180	5	4	NaN	NaN	NaN	0.67855	1	15589	15589		1.04	0.32392	1	32734			12231	2454	7099	7245	9676	9676					0.0777138060489051
KRKHDLHKM	9	Unmodified						0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	398.229237	1191.66588	1.3596	0.00054143	-3.8223	-0.0015222	-2.4627	-0.00098073	398.2276346912789	25.105	0.12063	25.105	25.057	25.178	0	1431	46	0.75620437	0.027803838	0.75620437	459.58282		16.897766	-0.0059434	-0.00094227	-0.00016718	NaN	1.04	179	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33674			12232	2454	7099	7245							0.0777138060489051
KRKQRDDYFSY	11	Unmodified	_KRKQRDDYFSY_					0	0	0			REV__ENSG00000119041|ENST00000263956|GTF3C3	REV__ENSG00000119041|ENST00000263956|GTF3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3784143446001	2	753.378414	1504.74228	1.7479	0.0013168	0.51476	0.00038781	2.2627	0.0017047	753.3781781015762	22.091	0.12067	22.091	22.067	22.187	0	987	43	1.0283957	0.025542736	1.0283957	415.68152	0	10.324493						178	6	4	NaN	NaN	NaN	0.76304	1	20600	20600		3.2116	0.32214	1	31698	+		12233	9280	7100	7246	9677	9677					0.010094309152236747
KRKRHWRP	8	Unmodified	_KRKRHWRP_					0	0	0		ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.57221395790003	3	388.572214	1162.69481	1.1547	0.00044869	-1.0148	-0.00039432	0.13991	5.4365E-05	388.906456027378	41.353	0.048092	41.353	41.329	41.377	0	1437	28	0.7524962	0.016689539	0.7524962	457.45935	0	10.145935						33	3	2	NaN	NaN	NaN	0.84887	1	15245	15245		0.16111	0.026183	1	1866.7			12234	4626	7101	7247	9678	9678					0.11997286016207909
KRKRMRRC	8	Unmodified	_KRKRMRRC_					0	0	0			REV__ENST00000449852.1_1_10:79687146-79689388:+|nuORF	REV__ENST00000449852.1_1_10:79687146-79689388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3345784256502	2	567.334578	1132.6546	1.2296	0.00069761	-10.281	-0.0058329	-9.0517	-0.0051353	567.328447093888	31.404	0.16894	31.404	31.356	31.525	0	1137	151	0.9369253	0.091588795	0.9369253	379.84055	0	37.131195						671	8	4	NaN	NaN	NaN	0.84727	1	14206	14206		1.2418	0	1	130440	+		12235	12228	7102	7248	9679	9679					0.0935828002980088
KRLDNRQGE	9	Unmodified	_KRLDNRQGE_					0	0	0			REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1115.5915950176002	1	1115.5916	1114.58432	2.379	0.0026539	-3.7571	-0.0041913	-1.3781	-0.0015374	1115.5882309179935	27.929	0.048256	27.929	27.905	27.953	0	66	34	1.579413	0.019421577	1.579413	320.22226	0	3.9376526						32	3	2	NaN	NaN	NaN	0.59509	1	13467	13467		5.6942	1.2811	1	2060.1	+		12236	12058	7103	7249	9680	9680					0.03160976446679342
KRPVGGLS	8	Unmodified	_KRPVGGLS_					0	0	0			REV__ENST00000372390.8_1_X:106956537-106956648:-|nuORF	REV__ENST00000372390.8_1_X:106956537-106956648:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.4941128044003	1	813.494113	812.486836	-0.018578	-1.5113E-05	4.0428	0.0032888	4.0242	0.0032737	813.4972137407926	58.027	0.047977	58.026	58.002	58.05	-0.00050735	426	58	1.3661768	0.033976436	1.3646574	278.2461	0	6.9198914						75	3	2	NaN	NaN	NaN	0.84887	1	4821	4821		0.32989	0	1	8000	+		12237	11910	7104	7250	9681	9681					0.07309239308483484
KRQEALAAA	9	Unmodified	_KRQEALAAA_					0	0	0		ENST00000526043.1_1_15:101815456-101816896:-|nuORF;ENST00000529968.1_1_15:101815456-101817667:-|nuORF;ENST00000527833.5_1_15:101814760-101817622:-|nuORF;ENST00000531964.5_1_15:101812984-101817507:-|nuORF;ENST00000398226.7_1_15:101812984-101817622:-|nuORF;ENSG00000131871|ENST00000526049|SELENOS	ENST00000526043.1_1_15:101815456-101816896:-|nuORF	ENST00000526043.1_1_15:101815456-101816896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.5476049378999	1	957.547605	956.540328	1.5373	0.001472	4.6987	0.0044992	6.236	0.0059712	957.5525550430522	34.638	0.096527	34.638	34.589	34.686	0	213	40	1.4926696	0.023074627	1.4926696	303.24637	0	4.6877747						67	5	2	NaN	NaN	NaN	0.41766	1	7258	7258		13.003	0.41496	1	4758.4			12238	2731	7105	7251	9682	9682					0.06031992020302823
KRRLATME	8	Unmodified	_KRRLATME_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5669601715002	1	1004.56696	1003.55968	1.2231	0.0012287	-0.12949	-0.00013009	1.0936	0.0010986	1004.5664284154112	32.973	0.096546	32.973	32.925	33.021	0	114	70	1.5511382	0.040694714	1.5511382	314.915	0	8.261932						130	5	2	NaN	NaN	NaN	0.74229	1	8744	8744		16.417	0	1	14231	+		12239	10137	7106	7252	9683	9683					0.058046250395932475
KRRRYMEEEY	10	Unmodified	_KRRRYMEEEY_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3591673464501	2	730.359167	1458.70378	0.12214	8.9203E-05	-1.0461	-0.00076402	-0.92395	-0.00067482	730.3587635002303	45.644	0.24008	45.655	45.607	45.848	0.011345	1155	52	0.92591566	0.031209052	0.9243962	374.36633	0	12.618439						451	11	4	NaN	NaN	NaN	0.77884	1	19439	19439		0.79988	0.10873	1	72363			12240	4803	7107	7253	9684	9684					-0.007221979909218135
KRRSEARG	8	Unmodified	_KRRSEARG_					0	0	0			REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.27830636950006	2	480.278306	958.54206	1.4385	0.00069086	0.64901	0.00031171	2.0875	0.0010026	480.27801053545664	36.181	0.024113	36.181	36.157	36.181	0	1278	34	0.85049206	0.020279348	0.85049206	345.55157	0	8.239441						40	2	2	NaN	NaN	NaN	0.83913	1	7300	7300		3.9685	0	1	4552.9	+		12241	12013	7108	7254	9685	9685					0.06113045828954
KRRSEARG	8	Unmodified	_KRRSEARG_					0	0	0			REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.27830636950006	2	480.278306	958.54206	1.375	0.00066038	2.8932	0.0013895	4.2682	0.0020499	480.2797709762143	36.278	0.21694	36.278	36.205	36.422	0	1281	40	0.84864825	0.023971736	0.84864825	344.80243	0	9.7395935						141	10	3	NaN	NaN	NaN	0.83913	1	7302	7302		3.9685	0	1	15041	+		12242	12013	7108	7254	9686	9686					0.06113045828954
KRRSEARG	8	Unmodified						0	0	0			REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	480.278306	958.54206	1.4385	0.00069086	0.64901	0.00031171	2.0875	0.0010026	480.27801053545664	36.181	0.024113	36.181	36.157	36.181	0	1278	34	0.85049206	0.020279348	0.85049206	345.55157		8.239441	0	0	0	NaN	3.9685	40	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4552.9	+		12243	12013	7108	7254							0.06113045828954
KSAKPPAG	8	Unmodified	_KSAKPPAG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4410146014001	1	755.441015	754.433738	0.87165	0.00065848	-10.693	-0.0080781	-9.8215	-0.0074196	755.4323887229114	31.042	0.096529	31.042	31.018	31.115	0	513	55	1.3142352	0.032289624	1.3142352	268.00946	0	6.5847473						113	5	2	NaN	NaN	NaN	0.83211	1	4150	4150		4.9097	0	1	10965			12244	3994	7109	7255	9687	9687					0.046698615258037535
KSAKPPAG	8	Unmodified						0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	755.441015	754.433738	1.465	0.0011067	-11.266	-0.0085108	-9.801	-0.0074041	755.43278305907	31.041	0.14481	31.036	31.012	31.157	-0.0050716	513	55	1.3142352	0.032289624	1.3127158	268.00946		6.5847473	-0.0030557	-0.00012481	-0.00075972	NaN	4.9097	110	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10370			12245	3994	7109	7255							0.046698615258037535
KSFDVPIE	8	Unmodified	_KSFDVPIE_					0	0	0			REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4880243735001	1	934.488024	933.480748	2.1437	0.0020033	-3.3997	-0.0031769	-1.256	-0.0011737	934.4863091240808	29.811	0.048243	29.803	29.755	29.803	-0.0070648	294	40	1.4446791	0.023148298	1.4431597	293.59973	0	4.7044067						48	3	2	NaN	NaN	NaN	0.79607	1	6541	6541		9.746	1.4557	1	2817	+		12246	9764	7110	7256	9688	9688					0.011346762862899595
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2844000671	2	569.2844	1136.55425	1.9922	0.0011341	-5.1351	-0.0029234	-3.1429	-0.0017892	569.2828748051248	30.101	0.096584	30.101	30.029	30.125	0	1209	58	0.892844	0.034956157	0.892844	361.95453	0	14.171051						130	5	3	NaN	NaN	NaN	0.31471	1	14336	14336		17.97	2.7943	1	17092			12247	170;3312	7111	7257	9689	9689					-0.008567752712451693
KSFEGLFYF	9	Unmodified						0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.2844	1136.55425	0.84273	0.00047975	-2.2124	-0.0012595	-1.3697	-0.00077975	569.2828079654038	30.124	0.14481	30.118	30.021	30.166	-0.0064106	1209	49	0.892844	0.02942884	0.8913246	361.95453		11.930298	0.0083722	0.0014622	-0.00075972	NaN	17.97	140	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15744			12248	170;3312	7111	7257							-0.008567752712451693
KSFNTLSKSM	10	Unmodified	_KSFNTLSKSM_					0	0	0			REV__nc|ENSG00000108242|P33260-2|CYP2C18	REV__nc|ENSG00000108242|P33260-2|CYP2C18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7973486543501	2	571.797349	1141.58014	1.3961	0.00079829	-3.8151	-0.0021814	-2.419	-0.0013832	571.7944843184488	16.874	0.14381	16.861	16.813	16.957	-0.013294	1191	40	0.90387505	0.023891509	0.9023556	366.4071	0	9.684998						160	7	3	NaN	NaN	NaN	0.34981	1	14044	14044		25.681	6.5178	1	17375	+		12249	9031	7112	7258	9690	9690					0.015017509087329017
KSGGGVSV	8	Unmodified	_KSGGGVSV_					0	0	0			REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3780799936001	1	690.37808	689.370804	1.7933	0.001238	-0.059259	-4.0911E-05	1.734	0.0011971	690.3774001596747	55.052	0.048008	55.052	55.028	55.076	0	552	67	1.2908988	0.039519787	1.2908988	263.69363	0	8.072784						90	3	2	NaN	NaN	NaN	0.84455	1	3026	3026		2.7852	0	1	10720	+		12250	13199	7113	7259	9691	9691					0.013692957377656967
KSGGGVSV	8	Unmodified	_KSGGGVSV_					0	0	0			REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3780799936001	1	690.37808	689.370804	-0.48124	-0.00033224	-2.3599	-0.0016292	-2.8411	-0.0019614	690.3760592641197	55.05	0.16803	55.049	55.001	55.169	-0.0006218	549	100	1.292695	0.05931449	1.2911756	264.06058	0	12.116257						179	8	2	NaN	NaN	NaN	0.82797	1	2954	2954		5.4659	2.6807	1	16612	+		12251	13199	7113	7259	9692	9692					0.013692957377656967
KSGGGVSV	8	Unmodified						0	0	0			REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.37808	689.370804	1.7933	0.001238	-0.059259	-4.0911E-05	1.734	0.0011971	690.3774001596747	55.052	0.048008	55.052	55.028	55.076	0	552	67	1.2908988	0.039519787	1.2908988	263.69363		8.072784	0.0011924	0.00086257	-0.00013841	NaN	5.4659	90	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10720	+		12252	13199	7113	7259							0.013692957377656967
KSGGGVSV	8	Unmodified						0	0	0			REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	REV__nc|ENSG00000186806|Q86VR7-2|VSIG10L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.37808	689.370804	-0.48124	-0.00033224	-2.3599	-0.0016292	-2.8411	-0.0019614	690.3760592641197	55.05	0.16803	55.049	55.001	55.169	-0.0006218	549	100	1.292695	0.05931449	1.2911756	264.06058		12.116257	-0.0011924	-0.00072573	0.00013841	NaN	5.4659	179	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16612	+		12253	13199	7113	7259							0.013692957377656967
KSGGSYGT	8	Unmodified	_KSGGSYGT_					0	0	0		TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A	TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant	TNRC6A|p.P976Tfs*27|1|0.3|ENSG00000090905|chr16:24791565-24791566|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3522591736001	1	756.352259	755.344983	1.2992	0.00098265	5.7561	0.0043536	7.0553	0.0053363	756.3566324367667	27.084	0.19308	27.074	27.049	27.242	-0.010124	588	64	1.2693287	0.03776586	1.2678093	258.84613	0	7.7013397						196	9	2	NaN	NaN	NaN	0.81251	1	4083	4083		7.5404	0	1	21806			12254	1067	7114	7260	9693	9693					-0.042475985045143716
KSGPGGNA	8	Unmodified	_KSGPGGNA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3420288383	1	687.342029	686.334752	1.558	0.0010709	5.4886	0.0037726	7.0467	0.0048435	687.3457135117364	28.459	0.096491	28.451	28.427	28.523	-0.0083504	756	37	1.1683017	0.021713614	1.1667823	238.6711	0	4.435837						74	5	2	NaN	NaN	NaN	0.84512	1	2877	2877		2.4615	0.53688	1	5359.3	+		12255	10125	7115	7261	9694	9694					-0.02096161439089883
KSGPGGNA	8	Unmodified						0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	687.342029	686.334752	1.9705	0.0013544	6.4681	0.0044458	8.4386	0.0058002	687.3478159088636	28.46	0.072422	28.46	28.436	28.508	0	756	37	1.1683017	0.02171135	1.1683017	238.6711		4.435379	0.0045127	0.00041678	0.00075972	NaN	2.4615	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6425.2	+		12256	10125	7115	7261							-0.02096161439089883
KSGPGGNA	8	Unmodified						0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	687.342029	686.334752	1.558	0.0010709	5.4886	0.0037726	7.0467	0.0048435	687.3457135117364	28.459	0.096491	28.451	28.427	28.523	-0.0083504	756	37	1.1683017	0.021713614	1.1667823	238.6711		4.435837	-0.0045127	-0.00025645	-0.00075972	NaN	2.4615	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5359.3	+		12257	10125	7115	7261							-0.02096161439089883
KSGPSVQFA	9	Unmodified	_KSGPSVQFA_					0	0	0		ENST00000445455.1_1_X:79816274-79816610:+|nuORF	ENST00000445455.1_1_X:79816274-79816610:+|nuORF	ENST00000445455.1_1_X:79816274-79816610:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.7454420821	2	460.745442	919.476331	1.3196	0.00060802	8.2643	0.0038077	9.5839	0.0044158	460.7493777231386	16.563	0.19184	16.55	16.478	16.67	-0.012993	1359	61	0.8006399	0.03696549	0.7991205	325.49216	0	15.027954						151	9	2	NaN	NaN	NaN	0.46215	1	6278	6278		11.17	0.56537	1	13470			12258	7019	7116	7262	9695	9695					0.013372118633810715
KSGRIMHG	8	Unmodified	_KSGRIMHG_					0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4723315048001	1	885.472332	884.465055	1.4671	0.0012991	-1.3696	-0.0012127	0.097588	8.6412E-05	885.4704730555969	30.896	0.096561	30.891	30.842	30.939	-0.0057545	1284	49	0.8468043	0.029505253	0.8452849	172.23318	0	6.001129						96	5	2	NaN	NaN	NaN	0.84756	1	5744	5744		1.072	0.67635	1	8933.3			12259	3305	7117	7263	9696	9696					0.01820111288247972
KSGRIMHG	8	Unmodified						0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	885.472332	884.465055	1.2557	0.0011118	-1.9354	-0.0017137	-0.67973	-0.00060188	885.4685635073031	30.897	0.072369	30.897	30.849	30.922	0	1284	49	0.8468043	0.029508412	0.8468043	172.23318		6.00177	0.0033982	-0.00025746	0.00075972	NaN	1.072	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6897.6			12260	3305	7117	7263							0.01820111288247972
KSGSMGPV	8	Unmodified	_KSGSMGPV_					0	0	0		ENSG00000084636|ENST00000373672|COL16A1;nc|ENSG00000084636|Q07092-2|COL16A1;ENST00000488128.6_1_1:32118254-32121779:-|nuORF	ENSG00000084636|ENST00000373672|COL16A1	ENSG00000084636|ENST00000373672|COL16A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.69436363930004	2	381.694364	761.374174	1.5713	0.00059974	7.581	0.0028936	9.1523	0.0034934	381.6972064937254	28.532	0.072409	28.532	28.508	28.581	0	1353	28	0.8043377	0.016638994	0.8043377	327.99292	0	6.785034						59	4	2	NaN	NaN	NaN	0.82797	1	4228	4228		5.4659	0.55612	1	4494.8			12261	962	7118	7264	9697	9697					-0.016057774798809987
KSGSSCSS	8	Unmodified	_KSGSSCSS_					0	0	0			REV__ENST00000262061.6_1_12:54744303-54744531:+|nuORF	REV__ENST00000262061.6_1_12:54744303-54744531:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3035944215001	1	742.303594	741.296318	1.5785	0.0011717	-2.5841	-0.0019182	-1.0056	-0.00074647	742.3011588178596	55.869	0.072067	55.869	55.869	55.941	0	540	142	1.2980826	0.08438814	1.2980826	264.79922	0	17.21457						139	4	2	NaN	NaN	NaN	0.84887	1	3926	3926		0.32989	0	1	7959.7	+		12262	11548	7119	7265	9698	9698					-0.08467835135922996
KSGSSCSS	8	Unmodified						0	0	0			REV__ENST00000262061.6_1_12:54744303-54744531:+|nuORF	REV__ENST00000262061.6_1_12:54744303-54744531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	742.303594	741.296318	1.5785	0.0011717	-2.5841	-0.0019182	-1.0056	-0.00074647	742.3011588178596	55.869	0.072067	55.869	55.869	55.941	0	540	142	1.2980826	0.08438814	1.2980826	264.79922		17.21457	0	0	0	NaN	0.32989	139	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7959.7	+		12263	11548	7119	7265							-0.08467835135922996
KSGTSGGG	8	Unmodified	_KSGTSGGG_					0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.6588354127501	2	325.658835	649.303118	1.4806	0.00048217	4.1452	0.0013499	5.6258	0.0018321	325.66065968310187	41.617	0.33673	41.625	41.456	41.793	0.0082588	1533	79	0.6930556	0.048374176	0.6915362	283.4737	0	19.78601						603	15	3	NaN	NaN	NaN	0.84887	1	1950	1950		0.32989	0	1	223460	+		12264	11245	7120	7266	9699	9699					-0.03556154193029215
KSGTSGGG	8	Unmodified	_KSGTSGGG_					0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.6588354127501	2	325.658835	649.303118	0.59764	0.00019463	5.3106	0.0017294	5.9082	0.0019241	325.6611731000786	44.518	0.26397	44.529	44.409	44.673	0.011646	1533	100	0.6930556	0.061387956	0.6915362	283.4737	0	25.108917						533	12	3	NaN	NaN	NaN	0.84887	1	1951	1951		0.32989	0	1	58760	+		12265	11245	7120	7266	9700	9700					-0.03556154193029215
KSGTSGGG	8	Unmodified						0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	325.658835	649.303118	1.6372	0.00053317	3.9982	0.001302	5.6354	0.0018352	325.66066683627383	44.568	0.38394	44.568	44.4	44.784	0	1533	100	0.6930556	0.06138134	0.6930556	283.4737		25.106201	0.01913	-0.00045117	0.00075972	NaN	0.32989	582	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71991	+		12266	11245	7120	7266							-0.03556154193029215
KSGTSGGG	8	Unmodified						0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	325.658835	649.303118	0.59764	0.00019463	5.3106	0.0017294	5.9082	0.0019241	325.6611731000786	44.518	0.26397	44.529	44.409	44.673	0.011646	1533	100	0.6930556	0.061387956	0.6915362	283.4737		25.108917	-0.01913	0.00040362	-0.00075972	NaN	0.32989	533	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58760	+		12267	11245	7120	7266							-0.03556154193029215
KSGTSVIL	8	Unmodified	_KSGTSVIL_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.4825450651002	1	804.482545	803.475269	1.7551	0.001412	4.6792	0.0037644	6.4344	0.0051763	804.4864203929029	36.061	0.07238	36.061	36.036	36.109	0	450	40	1.3518641	0.0232718	1.3518641	275.3824	0	4.7406006						56	4	2	NaN	NaN	NaN	0.83913	1	4788	4788		3.9685	1.1833	1	3950.1			12268	5335	7121	7267	9701	9701					0.0656699749448535
KSGTSVIL	8	Unmodified						0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	804.482545	803.475269	2.1525	0.0017317	2.8871	0.0023226	5.0397	0.0040543	804.4849963716262	36.035	0.072266	36.036	36.036	36.108	0.0011024	447	37	1.3536539	0.02147603	1.3521345	275.74698		4.3747864	-0.012242	-0.00047674	0.00013516	NaN	3.9685	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3413.2			12269	5335	7121	7267							0.0656699749448535
KSGTTLVL	8	Unmodified	_KSGTTLVL_					0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	818.4981951293001	1	818.498195	817.490919	1.3908	0.0011384	4.2719	0.0034966	5.6628	0.004635	818.5016448833499	35.963	0.21697	35.964	35.916	36.132	0.0011024	408	88	1.3769034	0.051847696	1.375384	280.4022	0	10.558624						379	10	4	NaN	NaN	NaN	0.69898	1	4876	4876		19.118	3.9429	1	66485			12270	2255	7122	7268	9702	9702					0.07487284011529027
KSGTTLVL	8	Unmodified						0	0	0		nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	nc|ENSG00000120327|Q9Y5E9-2|PCDHB14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	818.498195	817.490919	1.8403	0.0015063	4.3403	0.0035525	6.1806	0.0050588	818.5020494896723	35.964	0.1687	35.964	35.916	36.085	0	408	100	1.3769034	0.059018016	1.3769034	280.4022		12.018829	0.00024442	2.7423E-05	0.00075972	NaN	19.118	343	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65613			12271	2255	7122	7268							0.07487284011529027
KSKDDVGIL	9	Unmodified	_KSKDDVGIL_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5516872628001	1	974.551687	973.544411	1.3108	0.0012775	4.5124	0.0043975	5.8232	0.005675	974.5551196502262	30.777	0.072407	30.777	30.777	30.849	0	240	73	1.4766881	0.042610645	1.4766881	299.9252	0	8.6545105						84	4	2	NaN	NaN	NaN	0.62619	1	7711	7711		4.4131	1.6279	1	7052.6	+		12272	11327	7123	7269	9703	9703					0.056580367233777906
KSKLWIKIEL	10	Unmodified	_KSKLWIKIEL_					0	0	0			REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1257.7929205872	1	1257.79292	1256.78564	1.8722	0.0023549	3.0737	0.003866	4.9459	0.0062209	1257.7968698954533	39.068	0.14475	39.068	39.044	39.189	0	63	115	1.5811787	0.06713867	1.5811787	320.136	0	13.593353						450	7	4	NaN	NaN	NaN	0.76892	1	17936	17936		3.2116	0	1	100880	+		12273	12272	7124	7270	9704	9704					0.1675227243044901
KSKLWIKIEL	10	Unmodified	_KSKLWIKIEL_					0	0	0			REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1257.7929205872	1	1257.79292	1256.78564	1.729	0.0021748	3.5765	0.0044985	5.3055	0.0066732	1257.7982818149221	39.066	0.12065	39.071	39.023	39.143	0.0046806	57	106	1.5847093	0.061828494	1.5831898	320.85083	0	12.518188						471	6	5	NaN	NaN	NaN	0.76892	1	17167	17167		3.2116	0	1	95260	+		12274	12272	7124	7270	9705	9705					0.1675227243044901
KSKLWIKIEL	10	Unmodified						0	0	0			REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1257.79292	1256.78564	1.8722	0.0023549	3.0737	0.003866	4.9459	0.0062209	1257.7968698954533	39.068	0.14475	39.068	39.044	39.189	0	63	115	1.5811787	0.06713867	1.5811787	320.136		13.593353	-0.0013191	-0.00031876	-0.0010056	NaN	3.2116	450	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100880	+		12275	12272	7124	7270							0.1675227243044901
KSKLWIKIEL	10	Unmodified						0	0	0			REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1257.79292	1256.78564	1.729	0.0021748	3.5765	0.0044985	5.3055	0.0066732	1257.7982818149221	39.066	0.12065	39.071	39.023	39.143	0.0046806	57	106	1.5847093	0.061828494	1.5831898	320.85083		12.518188	0.0013191	0.0003137	0.0010056	NaN	3.2116	471	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95260	+		12276	12272	7124	7270							0.1675227243044901
KSPNYCEEDA	10	Unmodified	_KSPNYCEEDA_					0	0	0		ENSG00000188064|ENST00000339464|WNT7B	ENSG00000188064|ENST00000339464|WNT7B	ENSG00000188064|ENST00000339464|WNT7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2347781873001	2	578.234778	1154.455	0.96954	0.00056062	3.0759	0.0017786	4.0454	0.0023392	578.2371855693439	33.02	0.28938	33.018	32.873	33.162	-0.0024796	1239	49	0.87444305	0.02945745	0.8729236	354.42896	0	11.939667						233	13	3	NaN	NaN	NaN	0.69717	1	14456	14456		8.2448	0.65722	1	20635			12277	5534	7125	7271	9706	9706					-0.11604586018302143
KSPQKPKP	8	Unmodified	_KSPQKPKP_					0	0	0			REV__nc|ENSG00000122870|Q9H694-2|BICC1	REV__nc|ENSG00000122870|Q9H694-2|BICC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.5516276833001	1	909.551628	908.544351	0.49801	0.00045296	-0.31238	-0.00028412	0.18563	0.00016884	909.5524886992113	52.21	0.047897	52.21	52.186	52.234	-0.00031662	291	46	1.446459	0.02669537	1.4449396	294.07867	0	5.4273987						56	3	2	NaN	NaN	NaN	0.8439	1	6092	6092		3.1533	0	1	4384.7	+		12278	9352	7126	7272	9707	9707					0.08642081514040001
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2636646249999	2	523.263665	1044.51278	1.3002	0.00068033	-1.108	-0.00057977	0.19217	0.00010055	523.2632781221669	21.344	0.14437	21.344	21.296	21.44	0	1314	55	0.8283535	0.03322929	0.8283535	336.16483	0	13.4852295						164	7	3	NaN	NaN	NaN	0.27507	1	10393	10393		20.513	0.064659	1	18945			12279	963	7127	7273	9708	9708					-0.007699560306036801
KSSKGGGK	8	Unmodified	_KSSKGGGK_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9;ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.7192273316	2	374.719227	747.423902	1.7139	0.00064223	-6.6376	-0.0024873	-4.9237	-0.001845	374.716909108698	16.71	0.21594	16.71	16.638	16.854	0	1452	34	0.74322224	0.020409405	0.74322224	303.17114	0	8.325287						161	10	2	NaN	NaN	NaN	0.84887	1	4007	4007		0.32989	0	1	19187			12280	5960	7128	7274	9709	9709					0.0400867352042269
KSSLSTGV	8	Unmodified	_KSSLSTGV_					0	0	0		ENST00000239938.4_1_5:137803874-137803991:+|nuORF	ENST00000239938.4_1_5:137803874-137803991:+|nuORF	ENST00000239938.4_1_5:137803874-137803991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4305094946002	1	778.430509	777.423233	1.129	0.00087884	6.144	0.0047827	7.273	0.0056616	778.4348161829089	42.912	0.14391	42.922	42.874	43.018	0.010418	597	37	1.2639319	0.021590829	1.2624124	257.615	0	4.400635						90	7	2	NaN	NaN	NaN	0.84455	1	4386	4386		2.7852	0	1	5194.6			12281	6257	7129	7275	9710	9710					0.025618340807341156
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	0.94325	0.00062849	4.0018	0.0026664	4.945	0.0032949	666.3078627188538	38.348	0.36042	38.348	38.251	38.612	0	744	88	1.1755381	0.052471757	1.1755381	240.29782	0	10.726013						494	16	2	NaN	NaN	NaN	0.84887	1	2455	2455		0.32989	0	1	110800	+		12282	10219	7130	7276	9711	9711					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	1.173	0.00078161	4.5224	0.0030133	5.6955	0.0037949	666.308173348574	37.771	0.36076	37.771	37.626	37.987	0	726	118	1.1863867	0.07055032	1.1863867	242.51544	0	14.421555						674	16	2	NaN	NaN	NaN	0.84887	1	2457	2457		0.32989	0	1	152550	+		12283	10219	7130	7276	9712	9712					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	0.86976	0.00057952	5.1572	0.0034362	6.0269	0.0040158	666.3078592256985	38.131	0.024017	38.131	38.107	38.131	0	732	61	1.1827712	0.036150575	1.1827712	241.77638	0	7.3897247						60	2	2	NaN	NaN	NaN	0.84887	1	2458	2458		0.32989	0	1	4380.2	+		12284	10219	7130	7276	9713	9713					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	0.78921	0.00052586	5.4633	0.0036402	6.2525	0.0041661	666.3092536241716	38.203	0.048096	38.203	38.179	38.227	0	735	49	1.1809633	0.028926611	1.1809633	241.4068	0	5.9130554						62	3	2	NaN	NaN	NaN	0.84887	1	2461	2461		0.32989	0	1	6241.5	+		12285	10219	7130	7276	9714	9714					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	1.1133	0.0007418	5.6573	0.0037695	6.7706	0.0045113	666.3086091859328	37.241	0.12051	37.241	37.169	37.29	0	726	70	1.1863867	0.041584373	1.1863867	242.51544	0	8.500473						180	6	3	NaN	NaN	NaN	0.84887	1	2462	2462		0.32989	0	1	15126	+		12286	10219	7130	7276	9715	9715					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3053089810002	1	666.305309	665.298033	1.7939	0.0011953	3.053	0.0020342	4.8469	0.0032295	666.3076999221479	37.744	0.40885	37.747	37.579	37.987	0.0028229	723	118	1.1881942	0.07052767	1.1866747	242.88492	0	14.416931						873	18	4	NaN	NaN	NaN	0.84887	1	2367	2367		0.32989	0	1	159090	+		12287	10219	7130	7276	9716	9716					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3053089810002	1	666.305309	665.298033	1.8991	0.0012654	4.3483	0.0028973	6.2475	0.0041627	666.3083768109484	38.321	0.43274	38.325	38.205	38.638	0.0040245	741	85	1.1773466	0.050643325	1.1758271	240.66751	0	10.352264						728	19	4	NaN	NaN	NaN	0.84887	1	2371	2371		0.32989	0	1	124040	+		12288	10219	7130	7276	9717	9717					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3053089810002	1	666.305309	665.298033	1.986	0.0013233	4.7846	0.003188	6.7706	0.0045113	666.3084050645903	38.033	0.072094	38.036	38.012	38.084	0.0034256	741	58	1.1773466	0.03435588	1.1758271	240.66751	0	7.022873						88	4	2	NaN	NaN	NaN	0.84887	1	2372	2372		0.32989	0	1	6700.6	+		12289	10219	7130	7276	9718	9718					-0.04800458055649415
KSSSSGGG	8	Unmodified	_KSSSSGGG_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3053089810002	1	666.305309	665.298033	2.0226	0.0013477	5.6743	0.0037808	7.6969	0.0051285	666.3092242467336	38.177	0.048084	38.18	38.132	38.18	0.0034218	723	40	1.1881942	0.023494124	1.1866747	242.8849	0	4.8025513						66	3	2	NaN	NaN	NaN	0.84887	1	2375	2375		0.32989	0	1	6238.1	+		12290	10219	7130	7276	9719	9719					-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.305309	665.298033	1.173	0.00078161	4.5224	0.0030133	5.6955	0.0037949	666.308173348574	37.771	0.36076	37.771	37.626	37.987	0	726	118	1.1863867	0.07055032	1.1863867	242.51544		14.421555	0.011898	0.00036698	-0.000144	NaN	0.32989	674	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152550	+		12291	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.305309	665.298033	0.94325	0.00062849	4.0018	0.0026664	4.945	0.0032949	666.3078627188538	38.348	0.36042	38.348	38.251	38.612	0	744	88	1.1755381	0.052471757	1.1755381	240.29782		10.726013	0.011147	-9.6059E-05	-0.00014458	NaN	0.32989	494	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110800	+		12292	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.305309	665.298033	0.86976	0.00057952	5.1572	0.0034362	6.0269	0.0040158	666.3078592256985	38.131	0.024017	38.131	38.107	38.131	0	732	61	1.1827712	0.036150575	1.1827712	241.77638		7.3897247	0.047574	0.00017131	0.003472	NaN	0.32989	60	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4380.2	+		12293	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	666.305309	665.298033	0.78921	0.00052586	5.4633	0.0036402	6.2525	0.0041661	666.3092536241716	38.203	0.048096	38.203	38.179	38.227	0	735	49	1.1809633	0.028926611	1.1809633	241.4068		5.9130554	0.011496	-8.1235E-05	-0.0028557	NaN	0.32989	62	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6241.5	+		12294	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	666.305309	665.298033	1.7939	0.0011953	3.053	0.0020342	4.8469	0.0032295	666.3076999221479	37.744	0.40885	37.747	37.579	37.987	0.0028229	723	118	1.1881942	0.07052767	1.1866747	242.88492		14.416931	-0.011898	-0.00061212	0.000144	NaN	0.32989	873	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159090	+		12295	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	666.305309	665.298033	1.8991	0.0012654	4.3483	0.0028973	6.2475	0.0041627	666.3083768109484	38.321	0.43274	38.325	38.205	38.638	0.0040245	741	85	1.1773466	0.050643325	1.1758271	240.66751		10.352264	-0.011147	0.00013486	0.00014458	NaN	0.32989	728	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124040	+		12296	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	666.305309	665.298033	1.986	0.0013233	4.7846	0.003188	6.7706	0.0045113	666.3084050645903	38.033	0.072094	38.036	38.012	38.084	0.0034256	741	58	1.1773466	0.03435588	1.1758271	240.66751		7.022873	-0.047574	-7.6941E-05	-0.003472	NaN	0.32989	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6700.6	+		12297	10219	7130	7276							-0.04800458055649415
KSSSSGGG	8	Unmodified						0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	666.305309	665.298033	2.0226	0.0013477	5.6743	0.0037808	7.6969	0.0051285	666.3092242467336	38.177	0.048084	38.18	38.132	38.18	0.0034218	723	40	1.1881942	0.023494124	1.1866747	242.8849		4.8025513	-0.011496	5.9355E-05	0.0028557	NaN	0.32989	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6238.1	+		12298	10219	7130	7276							-0.04800458055649415
KSSSSSGG	8	Unmodified	_KSSSSSGG_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3158736673001	1	696.315874	695.308597	0.50368	0.00035072	4.5953	0.0031998	5.099	0.0035505	696.3202260626052	39.718	0.14469	39.718	39.694	39.839	0	693	85	1.2062578	0.0505296	1.2062578	246.36292	0	10.320038						192	7	2	NaN	NaN	NaN	0.84887	1	3141	3141		0.32989	0	1	19917	+		12299	10982	7131	7277	9720	9720					-0.051244754012259364
KSSSSSGG	8	Unmodified						0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	696.315874	695.308597	0.50368	0.00035072	4.5953	0.0031998	5.099	0.0035505	696.3202260626052	39.718	0.14469	39.718	39.694	39.839	0	693	85	1.2062578	0.0505296	1.2062578	246.36292		10.320038	-0.11051	0.00040693	-0.00014293	NaN	0.32989	192	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19917	+		12300	10982	7131	7277							-0.051244754012259364
KSSWLEEDD	9	Unmodified	_KSSWLEEDD_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.74329332365	2	554.743293	1107.47203	1.1888	0.00065949	2.2155	0.001229	3.4043	0.0018885	555.2459194529374	34.445	0.12064	34.445	34.396	34.517	0	1245	46	0.87076044	0.027626812	0.87076044	353.11304	0	11.203278						111	6	2	NaN	NaN	NaN	0.56671	1	13153	13153		6.8632	0.613	1	12879			12301	799	7132	7278	9721	9721					-0.07740342140846224
KSYLPQTVR	9	Unmodified	_KSYLPQTVR_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.5451076047333	3	364.545108	1090.61349	1.7653	0.00064353	-10.893	-0.0039711	-9.128	-0.0033276	364.54074705897835	14.309	0.048069	14.309	14.285	14.333	0	1569	31	0.6707121	0.01862967	0.6707121	408.05624	0	11.334198						48	3	2	NaN	NaN	NaN	0.2345	1	12438	12438		20.688	0	1	3200.2			12302	2870	7133	7279	9722	9722					0.07181120742939129
KTCGTTLL	8	Unmodified	_KTCGTTLL_					0	0	0		ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.4546157551	1	836.454616	835.447339	1.6393	0.0013712	-3.1427	-0.0026287	-1.5034	-0.0012575	836.4530303185404	20.309	0.096159	20.309	20.285	20.381	0	507	49	1.3178225	0.028695583	1.3178225	268.27524	0	5.8417053						75	5	2	NaN	NaN	NaN	0.74229	1	5205	5205		16.417	0	1	6611.8			12303	2381	7134	7280	9723	9723					0.02303351242721874
KTCGTTLL	8	Unmodified						0	0	0		ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	836.454616	835.447339	1.5149	0.0012672	-4.6707	-0.0039068	-3.1558	-0.0026397	836.4507728960384	20.333	0.096273	20.319	20.271	20.367	-0.014141	504	43	1.3196158	0.025108814	1.3180964	268.64032		5.111511	0.0049034	-0.00074075	0.00013697	NaN	16.417	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6223.5			12304	2381	7134	7280							0.02303351242721874
KTEFERITVAM	11	Unmodified	_KTEFERITVAM_					0	0	0			REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.85011250635	2	662.850113	1323.68567	1.5956	0.0010576	-7.7834	-0.0051593	-6.1878	-0.0041016	662.8441202527729	26.601	0.24135	26.601	26.505	26.746	0	1092	70	0.9644182	0.042142153	0.9644182	390.30716	0	17.055237						198	11	3	NaN	NaN	NaN	0.6085	1	19156	19156		13.463	1.7242	1	20500	+		12305	13420	7135	7281	9724	9724					0.036776670343442674
KTEFERITVAM	11	Unmodified	_KTEFERITVAM_					0	0	0			REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.85011250635	2	662.850113	1323.68567	1.5804	0.0010475	-8.6258	-0.0057176	-7.0454	-0.0046701	662.8418953182758	26.625	0.24128	26.614	26.494	26.735	-0.010643	1092	73	0.9644182	0.043972015	0.96289873	390.30716	0	17.795837						211	11	3	NaN	NaN	NaN	0.57804	1	18300	18300		15.463	0	1	19636	+		12306	13420	7135	7281	9725	9725					0.036776670343442674
KTEFERITVAM	11	Unmodified						0	0	0			REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	662.850113	1323.68567	1.5956	0.0010576	-7.7834	-0.0051593	-6.1878	-0.0041016	662.8441202527729	26.601	0.24135	26.601	26.505	26.746	0	1092	70	0.9644182	0.042142153	0.9644182	390.30716		17.055237	-0.0065734	0.00056273	0.00075972	NaN	15.463	198	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20500	+		12307	13420	7135	7281							0.036776670343442674
KTEFERITVAM	11	Unmodified						0	0	0			REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	REV__tr|U7SL73|U7SL73_FUSNURibonucleaseYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnyPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	662.850113	1323.68567	1.5804	0.0010475	-8.6258	-0.0057176	-7.0454	-0.0046701	662.8418953182758	26.625	0.24128	26.614	26.494	26.735	-0.010643	1092	73	0.9644182	0.043972015	0.96289873	390.30716		17.795837	0.0065734	-0.00055395	-0.00075972	NaN	15.463	211	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19636	+		12308	13420	7135	7281							0.036776670343442674
KTFSEHLTSY	10	Unmodified	_KTFSEHLTSY_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7984028993501	2	606.798403	1211.58225	2.0394	0.0012375	-4.7828	-0.0029022	-2.7433	-0.0016647	606.7956646801966	16.083	0.09589	16.07	16.047	16.142	-0.012611	1191	46	0.90387505	0.02757907	0.9023556	366.15436	0	11.172089						64	5	2	NaN	NaN	NaN	0.65742	1	16090	16090		10.965	2.0031	1	4794.1			12309	4188	7136	7282	9726	9726					-0.015074970817977373
KTFSEHLTSY	10	Unmodified						0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.798403	1211.58225	1.4174	0.00086006	-1.0055	-0.00061014	0.41186	0.00024991	606.79769734851	15.99	0.072012	15.99	15.966	16.038	0	1191	37	0.90387505	0.022059679	0.90387505	366.15436		8.936249	-0.040293	0.0031282	0.00075972	NaN	10.965	86	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5066.5			12310	4188	7136	7282							-0.015074970817977373
KTFWNKKIV	9	Unmodified	_KTFWNKKIV_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.5693646089333	3	388.569365	1162.68626	1.1581	0.00045001	7.0192	0.0027274	8.1773	0.0031774	388.57233986240556	39.668	0.096466	39.673	39.673	39.77	0.0053368	1434	85	0.75435036	0.05186957	0.7528309	458.58655	0	31.532715						224	5	3	NaN	NaN	NaN	0.67696	1	14723	14723		1.1768	0.73099	1	23226			12311	14006	7137	7283	9727	9727					0.1114287453635825
KTGAKSTA	8	Unmodified	_KTGAKSTA_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.4308438456001	1	763.430844	762.423567	1.8898	0.0014428	2.0645	0.0015761	3.9544	0.0030189	763.4320685092775	29.884	0.072378	29.884	29.86	29.932	0	555	46	1.2891023	0.026941061	1.2891023	262.83493	0	5.4930115						56	4	2	NaN	NaN	NaN	0.83211	1	4248	4248		4.9097	0	1	4009.2	+		12312	11102	7138	7284	9728	9728					0.03285253800572718
KTGAKSTA	8	Unmodified	_KTGAKSTA_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.4308438456001	1	763.430844	762.423567	1.5844	0.0012095	3.7904	0.0028937	5.3748	0.0041033	763.4340293472077	29.883	0.096512	29.876	29.852	29.948	-0.0070667	552	46	1.2908988	0.026949644	1.2893794	263.20117	0	5.494751						80	5	2	NaN	NaN	NaN	0.84512	1	4175	4175		2.4615	0	1	5747.1	+		12313	11102	7138	7284	9729	9729					0.03285253800572718
KTGAKSTA	8	Unmodified						0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	763.430844	762.423567	1.8898	0.0014428	2.0645	0.0015761	3.9544	0.0030189	763.4320685092775	29.884	0.072378	29.884	29.86	29.932	0	555	46	1.2891023	0.026941061	1.2891023	262.83493		5.4930115	0.0039968	-0.00081906	-0.00013851	NaN	4.9097	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4009.2	+		12314	11102	7138	7284							0.03285253800572718
KTGAKSTA	8	Unmodified						0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	763.430844	762.423567	1.5844	0.0012095	3.7904	0.0028937	5.3748	0.0041033	763.4340293472077	29.883	0.096512	29.876	29.852	29.948	-0.0070667	552	46	1.2908988	0.026949644	1.2893794	263.20117		5.494751	-0.0039968	0.00049853	0.00013851	NaN	4.9097	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5747.1	+		12315	11102	7138	7284							0.03285253800572718
KTHWNTWYLS	10	Unmodified	_KTHWNTWYLS_					0	0	0			REV__LRP4|p.D657N|1|0.16|ENSG00000134569|chr11:46890067-46890067|C/T|missense_variant	REV__LRP4|p.D657N|1|0.16|ENSG00000134569|chr11:46890067-46890067|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.8875333990667	3	445.887533	1334.64077	0.88098	0.00039282	-4.6405	-0.0020691	-3.7595	-0.0016763	445.8861287460526	39.791	0.096489	39.791	39.791	39.887	0	1563	22	0.67443806	0.013040066	0.67443806	409.3872	0	7.9154053						28	5	2	NaN	NaN	NaN	0.77513	1	19324	19324		0.63172	0.074755	1	1379.5	+		12316	13058	7139	7285	9730	9730					-0.01316395716662555
KTKGAGGG	8	Unmodified	_KTKGAGGG_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	338.19284540560005	2	338.192845	674.371138	1.4573	0.00049285	0.13594	4.5975E-05	1.5932	0.00053883	338.19291410117177	27.157	0.096531	27.157	27.109	27.205	0	1413	55	0.7673241	0.033344746	0.7673241	313.61108	0	13.628235						88	5	2	NaN	NaN	NaN	0.84945	1	2719	2719		0	0	1	9708.9			12317	7693	7140	7286	9731	9731					0.020927154576270368
KTKGAGGG	8	Unmodified	_KTKGAGGG_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	338.19284540560005	2	338.192845	674.371138	1.5226	0.00051494	0.17762	6.0069E-05	1.7002	0.00057501	338.1928940206361	27.156	0.096518	27.146	27.122	27.218	-0.010126	1410	58	0.76917666	0.035191536	0.7676573	314.36826	0	14.383026						94	5	2	NaN	NaN	NaN	0.84945	1	2631	2631		0	0	1	9894			12318	7693	7140	7286	9732	9732					0.020927154576270368
KTKGAGGG	8	Unmodified	_KTKGAGGG_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3784143446002	1	675.378414	674.371138	1.0154	0.00068579	2.3022	0.0015549	3.3177	0.0022407	675.3799357089674	27.156	0.38613	27.146	26.977	27.363	-0.010126	744	82	1.1755381	0.04884243	1.1740186	240.2327	0	9.981445						362	17	2	NaN	NaN	NaN	0.84945	1	2632	2632		0	0	1	150450			12319	7693	7140	7286	9733	9733					0.020927154576270368
KTKGSGVL	8	Unmodified	_KTKGSGVL_					0	0	0		ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4828794161	1	789.482879	788.475603	-0.20115	-0.00015881	-1.1565	-0.00091304	-1.3577	-0.0010718	789.4814389748997	57.043	0.096031	57.042	57.018	57.114	-0.00056458	369	142	1.4001206	0.083975315	1.3986012	285.30368	0	17.111725						284	5	3	NaN	NaN	NaN	0.84651	1	4524	4524		1.6704	0	1	35876			12320	7391	7141	7287	9734	9734					0.07290417214323952
KTKKLYIDSR	10	Unmodified	_KTKKLYIDSR_					0	0	0		ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3746120579	2	626.374612	1250.73467	1.7035	0.001067	-10.894	-0.006824	-9.1909	-0.005757	626.3689571466173	47.492	0.19171	47.492	47.444	47.636	0	1239	58	0.87444305	0.03498262	0.87444305	354.10675	0	14.166229						348	9	4	NaN	NaN	NaN	0.76892	1	17789	17789		3.2116	0.61216	1	36318			12321	6160	7142	7288	9735	9735					0.1193332338559685
KTKKLYIDSR	10	Unmodified						0	0	0		ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	ENSG00000265808|ENST00000578049|SEC22B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.374612	1250.73467	-0.65059	-0.00040751	-8.0527	-0.005044	-8.7033	-0.0054515	626.370305477514	47.49	0.19162	47.498	47.426	47.617	0.007412	1236	61	0.876284	0.036821842	0.8747646	354.85223		14.911041	0.0029922	0.0017154	0.00016078	NaN	3.2116	370	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36929			12322	6160	7142	7288							0.1193332338559685
KTLAFLIDLCH	11	Unmodified	_KTLAFLIDLCH_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.23728619190007	3	425.237286	1272.69003	1.394	0.00059277	5.3745	0.0022854	6.7684	0.0028782	425.23943492598187	21.778	0.072241	21.764	21.691	21.764	-0.013895	1443	31	0.7487872	0.018546999	0.7472678	454.74377	0	11.263702						53	4	2	NaN	NaN	NaN	0.76676	1	17465	17465		2.5605	0	1	5766.1	+		12323	8377	7143	7289	9736	9736					0.06459176247926735
KTLDSWRDE	9	Unmodified	_KTLDSWRDE_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2803773217	2	575.280377	1148.5462	2.0246	0.0011647	-6.1602	-0.0035438	-4.1355	-0.0023791	575.2768196279156	25.901	0.096548	25.89	25.841	25.938	-0.0116	1206	40	0.894683	0.023909628	0.89316356	362.65466	0	9.69165						82	5	2	NaN	NaN	NaN	0.54912	1	14256	14256		7.5876	3.6595	1	10209			12324	844	7144	7290	9737	9737					-0.022129542586753814
KTLDSWRDE	9	Unmodified						0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.280377	1148.5462	2.0287	0.0011671	-5.3254	-0.0030636	-3.2968	-0.0018966	575.2765963979803	25.877	0.072395	25.877	25.853	25.926	0	1206	46	0.894683	0.02759105	0.894683	362.65466		11.183838	-0.0061523	0.00048194	0.00075972	NaN	7.5876	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11538			12325	844	7144	7290							-0.022129542586753814
KTMIGDKLIN	10	Unmodified	_KTMIGDKLIN_					0	0	0			REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.8233664396001	2	566.823366	1131.63218	1.8623	0.0010556	-1.3945	-0.00079043	0.46786	0.00026519	566.8222189626066	14.333	0.071996	14.333	14.333	14.405	0	1197	28	0.9001988	0.016543865	0.9001988	364.95514	0	6.7071533						53	4	2	NaN	NaN	NaN	0.65442	1	14157	14157		11.17	0	1	3705	+		12326	11459	7145	7291	9738	9738					0.07162914322498182
KTNDVMILA	9	Unmodified	_KTNDVMILA_					0	0	0			REV__ENSG00000131148|ENST00000253457|EMC8	REV__ENSG00000131148|ENST00000253457|EMC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.77588493075007	2	502.775885	1003.53722	1.5693	0.00078901	-6.0951	-0.0030644	-4.5257	-0.0022754	502.772987280739	20.333	0.19269	20.319	20.271	20.463	-0.014141	1119	193	0.9479278	0.11730969	0.94640833	384.89508	0	47.632233						939	9	3	NaN	NaN	NaN	0.68263	1	8558	8558		0.69115	0	1	183060	+		12327	9511	7146	7292	9739	9739					0.03558980851312299
KTNDVMILA	9	Unmodified						0	0	0			REV__ENSG00000131148|ENST00000253457|EMC8	REV__ENSG00000131148|ENST00000253457|EMC8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.775885	1003.53722	1.7555	0.00088264	-6.0309	-0.0030322	-4.2753	-0.0021495	502.7729951761948	20.333	0.16829	20.333	20.261	20.429	0	1113	190	0.9515937	0.11547047	0.9515937	386.3836		46.885437	0.0071378	3.6119E-05	0.0025927	NaN	0.69115	802	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129670	+		12328	9511	7146	7292							0.03558980851312299
KTNDVMILA	9	Unmodified						0	0	0			REV__ENSG00000131148|ENST00000253457|EMC8	REV__ENSG00000131148|ENST00000253457|EMC8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.775885	1003.53722	1.5693	0.00078901	-6.0951	-0.0030644	-4.5257	-0.0022754	502.772987280739	20.333	0.19269	20.319	20.271	20.463	-0.014141	1119	193	0.9479278	0.11730969	0.94640833	384.89508		47.632233	-0.0071378	-2.8416E-05	-0.0025927	NaN	0.69115	939	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183060	+		12329	9511	7146	7292							0.03558980851312299
KTNYCTKPQK	10	Unmodified	_KTNYCTKPQK_					0	0	0		nc|ENSG00000134200|P01222-2|TSHB;ENSG00000134200|ENST00000256592|TSHB	nc|ENSG00000134200|P01222-2|TSHB	nc|ENSG00000134200|P01222-2|TSHB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.8160727237499	2	605.816073	1209.61759	1.1234	0.00068057	6.6576	0.0040333	7.781	0.0047138	606.3217675577692	27.446	0.096556	27.446	27.422	27.519	0	1146	64	0.93142134	0.03854406	0.93142134	377.32007	0	15.614258						173	5	4	NaN	NaN	NaN	0.70677	1	16724	16724		7.5876	0.047225	1	24195			12330	2854	7147	7293	9740	9740					0.021168421743141153
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7716568326	2	528.771657	1055.52876	1.6983	0.00089802	-1.5045	-0.00079552	0.19386	0.00010251	528.7714052161898	21.537	0.16872	21.537	21.464	21.633	0	1293	67	0.84127116	0.040587306	0.84127116	341.36075	0	16.469025						262	8	3	NaN	NaN	NaN	0.045904	1	10889	10889		63.958	41.832	1	52649			12331	2027	7148	7294	9741	9741					0.00321750206330762
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENST00000463385.5_1_2:99938416-99949470:-|nuORF;nc|ENSG00000115514|O14530-2|TXNDC9;ENSG00000115514|ENST00000264255|TXNDC9	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENST00000463385.5_1_2:99938416-99949470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7716568326	2	528.771657	1055.52876	1.2462	0.00065897	-0.90072	-0.00047628	0.3455	0.00018269	528.7711697414691	21.537	0.14449	21.523	21.499	21.643	-0.014004	1293	64	0.84127116	0.038736105	0.8397517	341.36072	0	15.717865						250	7	3	NaN	NaN	NaN	0.11323	1	10661	10661		45.165	23.039	1	54899			12332	2027	7148	7294	9742	9742					0.00321750206330762
KTRLELEE	8	Unmodified	_KTRLELEE_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.2823886943999	2	509.282389	1016.55022	1.306	0.00066512	-3.4727	-0.0017686	-2.1667	-0.0011035	509.2804136583791	39.068	0.048203	39.068	39.044	39.093	0	1347	28	0.8080346	0.01663357	0.8080346	328.0363	0	6.7526855						33	3	2	NaN	NaN	NaN	0.82797	1	9240	9240		5.4659	0	1	1762.1			12333	497	7149	7295	9743	9743					0.04261135235026359
KTTKDHTM	8	Unmodified	_KTTKDHTM_					0	0	0			REV__ENST00000604297.1_1_X:46421090-46422044:-|nuORF	REV__ENST00000604297.1_1_X:46421090-46422044:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.4771421112	1	961.477142	960.469866	0.59432	0.00057143	8.8841	0.0085419	9.4784	0.0091133	961.4855805949082	38.107	0.096115	38.107	38.059	38.155	0	393	46	1.3858368	0.026797771	1.3858368	281.52618	0	5.4438477						94	5	2	NaN	NaN	NaN	0.84512	1	7345	7345		2.4615	1.0219	1	8925.8	+		12334	12971	7150	7296	9744	9744					-0.011950493596486922
KTTVIQLH	8	Unmodified	_KTTVIQLH_					0	0	0		ENST00000482005.5_1_17:61938256-61939809:+|nuORF	ENST00000482005.5_1_17:61938256-61939809:+|nuORF	ENST00000482005.5_1_17:61938256-61939809:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.5621923696002	1	939.562192	938.554916	0.94943	0.00089205	-3.6831	-0.0034605	-2.7336	-0.0025684	939.5579626309128	53.576	0.047874	53.576	53.576	53.623	-0.00053787	261	37	1.4642475	0.021334767	1.462728	297.55316	0	4.3354797						40	3	2	NaN	NaN	NaN	0.84455	1	6657	6657		2.7852	0.32367	1	2646.3			12335	7210	7151	7297	9745	9745					0.08318064168486217
KTVIRLIKEI	10	Unmodified	_KTVIRLIKEI_					0	0	0			REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	REV__tr|U7T3R5|U7T3R5_FUSNUtRNApseudouridinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=truAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1212.8038196245	1	1212.80382	1211.79654	1.6071	0.0019491	0.39163	0.00047497	1.9988	0.0024241	1212.8062970706117	39.572	0.096149	39.577	39.553	39.649	0.0053368	51	64	1.5882392	0.037077427	1.5867198	321.69543	0	7.5099792						146	5	2	NaN	NaN	NaN	0.77928	1	16103	16103		0.69115	0	1	11809	+		12336	13597	7152	7298	9746	9746					0.19911674804734503
KTVKGGGA	8	Unmodified	_KTVKGGGA_					0	0	0			REV__ENST00000513637.1_1_5:43495177-43495438:-|nuORF	REV__ENST00000513637.1_1_5:43495177-43495438:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.4253645372002	1	717.425365	716.418088	0.79361	0.00056936	-4.4383	-0.0031841	-3.6446	-0.0026148	717.4223602016476	31.959	0.096558	31.959	31.911	32.008	0	540	82	1.2980826	0.04850936	1.2980826	264.96613	0	9.901794						123	5	2	NaN	NaN	NaN	0.84756	1	3543	3543		1.072	0	1	10959	+		12337	12568	7153	7299	9747	9747					0.048535750087694396
KVAAAGAF	8	Unmodified	_KVAAAGAF_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.4195508778	1	734.419551	733.412274	1.0038	0.00073721	-1.5569	-0.0011434	-0.5531	-0.00040621	734.4171795955971	53.456	0.047924	53.456	53.432	53.48	-0.00053787	594	28	1.265731	0.016190529	1.2642115	258.25012	0	3.3033752						32	3	2	NaN	NaN	NaN	0.84876	1	3727	3727		0.39566	0	1	1908.8			12338	2737	7154	7300	9748	9748					0.034904764970860924
KVAHVIGLL	9	Unmodified	_KVAHVIGLL_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.6193133180001	1	949.619313	948.612037	2.0204	0.0019186	-2.945	-0.0027966	-0.92465	-0.00087806	949.6153373387363	52.14	0.071842	52.14	52.116	52.188	0	174	34	1.5157272	0.019499898	1.5157272	307.96722	0	3.9620056						49	4	2	NaN	NaN	NaN	0.68801	1	7055	7055		0.23014	0	1	2656.7			12339	4591	7155	7301	9749	9749					0.1356753144484628
KVALDGAP	8	Unmodified	_KVALDGAP_					0	0	0			REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4406802504001	1	770.44068	769.433404	1.7637	0.0013588	7.8354	0.0060367	9.5991	0.0073955	770.4466215948027	57.141	0.048019	57.141	57.141	57.189	0	348	52	1.412609	0.030315995	1.412609	287.97028	0	6.180084						77	3	2	NaN	NaN	NaN	0.84692	1	4350	4350		1.4396	0	1	8991.2	+		12340	13384	7156	7302	9750	9750					0.03946441805953782
KVALDGAP	8	Unmodified						0	0	0			REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	770.44068	769.433404	1.7637	0.0013588	7.8354	0.0060367	9.5991	0.0073955	770.4466215948027	57.141	0.048019	57.141	57.141	57.189	0	348	52	1.412609	0.030315995	1.412609	287.97028		6.180084	0.0012959	-0.0012121	-0.0010235	NaN	1.4396	77	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8991.2	+		12341	13384	7156	7302							0.03946441805953782
KVALDGAP	8	Unmodified						0	0	0			REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	REV__tr|U7SFY6|U7SFY6_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02283PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	770.44068	769.433404	-0.10942	-8.4305E-05	10.387	0.0080025	10.277	0.0079182	770.4483195345433	57.139	0.072124	57.138	57.138	57.21	-0.00053787	342	49	1.4161754	0.028528094	1.4146559	288.6973		5.8156433	-0.0012959	0.00075367	0.0010235	NaN	1.4396	92	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9878.9	+		12342	13384	7156	7302							0.03946441805953782
KVAPYHVQY	9	Unmodified	_KVAPYHVQY_					0	0	0		nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000198722|ENST00000635942|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	nc|ENSG00000198722|O14795|UNC13B	nc|ENSG00000198722|O14795|UNC13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7954662799001	2	552.795466	1103.57638	1.6115	0.00089085	-10.44	-0.005771	-8.8282	-0.0048802	552.7895077476549	34.612	0.096436	34.612	34.563	34.66	-0.00064468	1263	31	0.85970795	0.018426836	0.8581885	348.64615	0	7.472809						66	5	2	NaN	NaN	NaN	0.63698	1	12651	12651		3.9685	0.39873	1	4652.2			12343	5798	7157	7303	9751	9751					0.028734491971817988
KVEAPAGP	8	Unmodified	_KVEAPAGP_					0	0	0		nc|ENSG00000156042|Q5T0N1-2|CFAP70;nc|ENSG00000156042|Q5T0N1|CFAP70;ENSG00000156042|ENST00000355577|CFAP70	nc|ENSG00000156042|Q5T0N1-2|CFAP70	nc|ENSG00000156042|Q5T0N1-2|CFAP70	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.4250301862	1	768.42503	767.417754	1.2062	0.00092686	-2.8778	-0.0022114	-1.6717	-0.0012845	768.4229446520618	37.145	0.12066	37.145	37.097	37.217	0	588	49	1.2693287	0.028778553	1.2693287	258.77353	0	5.8669586						121	6	2	NaN	NaN	NaN	0.84692	1	4324	4324		1.4396	0	1	12662			12344	3903	7158	7304	9752	9752					0.02474155288905422
KVEQAQKPSFQ	11	Unmodified	_KVEQAQKPSFQ_					0	0	0		nc|ENSG700|P0DJD4|RBMY1C	nc|ENSG700|P0DJD4|RBMY1C	nc|ENSG700|P0DJD4|RBMY1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.566459878	3	430.56646	1288.67755	1.2051	0.00051889	1.4139	0.00060878	2.619	0.0011277	430.56718624978225	20.285	0.12021	20.285	20.261	20.381	0	1416	46	0.76547134	0.027791798	0.76547134	464.81436	0	16.875916						96	6	2	NaN	NaN	NaN	0.65755	1	18574	18574		5.1661	0	1	8895.8			12345	8065	7159	7305	9753	9753					0.04475856109229426
KVFIFPSAL	9	Unmodified	_KVFIFPSAL_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ZNF791|p.H570Ifs*2|1|0.22|ENSG00000173875|chr19:12629237-12629237|C/-|frameshift_variant;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.30767819815	2	511.307678	1020.6008	1.6177	0.00082712	-2.911	-0.0014884	-1.2933	-0.00066129	511.3065168418757	28.242	0.048252	28.233	28.209	28.257	-0.0089779	1260	37	0.8615505	0.022107422	0.8600311	349.7435	0	8.974426						48	3	2	NaN	NaN	NaN	0.59509	1	9222	9222		5.6942	1.384	1	3228.7			12346	4914	7160	7306	9754	9754					0.09132709350694768
KVFIFPSAL	9	Unmodified						0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ZNF791|p.H570Ifs*2|1|0.22|ENSG00000173875|chr19:12629237-12629237|C/-|frameshift_variant;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.307678	1020.6008	2.2021	0.0011259	1.2791	0.00065402	3.4812	0.00178	511.3090393310377	28.194	0.072382	28.194	28.17	28.243	0	1257	34	0.86339295	0.020266235	0.86339295	350.49136		8.22699	-0.019301	0.0031014	0.0016809	NaN	5.6942	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3015.1			12347	4914	7160	7306							0.09132709350694768
KVFKNGNAF	9	Unmodified	_KVFKNGNAF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.78235890465	2	512.782359	1023.55016	2.4602	0.0012616	-2.0547	-0.0010536	0.40549	0.00020793	512.781210395056	13.805	0.12015	13.805	13.733	13.853	0	1275	34	0.85233563	0.020279348	0.85233563	345.98947	0	8.232025						98	6	2	NaN	NaN	NaN	0.04947	1	9516	9516		47.136	12.697	1	11089			12348	3424	7161	7307	9755	9755					0.039331800256945826
KVFLGRDTY	9	Unmodified	_KVFLGRDTY_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.8007486230501	2	549.800749	1097.58694	1.6527	0.00090864	-3.8077	-0.0020935	-2.155	-0.0011848	550.3000070488854	16.278	0.24001	16.278	16.182	16.422	0	1233	49	0.87812483	0.029451072	0.87812483	356.1389	0	11.944397						357	11	4	NaN	NaN	NaN	0.060816	1	12756	12756		42.318	9.5396	1	84687			12349	764	7162	7308	9756	9756					0.042054318516193234
KVFLGRDTY	9	Unmodified	_KVFLGRDTY_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.8007486230501	2	549.800749	1097.58694	2.0019	0.0011007	-4.6365	-0.0025491	-2.6345	-0.0014485	550.2991083298492	16.299	0.28767	16.286	16.238	16.526	-0.012993	1233	64	0.87812483	0.038664997	0.8766054	356.1389	0	15.681244						395	13	4	NaN	NaN	NaN	0.42817	1	12423	12423		12.57	1.3994	1	86122			12350	764	7162	7308	9757	9757					0.042054318516193234
KVGAGPRG	8	Unmodified	_KVGAGPRG_					0	0	0		ENST00000527696.5_1_11:209264-209561:+|nuORF;ENST00000532373.1_1_11:208854-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4365979255002	1	741.436598	740.429321	1.5892	0.0011783	3.0677	0.0022745	4.6569	0.0034528	741.4381397246622	56.948	0.048042	56.948	56.924	56.972	0	564	58	1.2837118	0.03415072	1.2837118	261.87323	0	6.9666443						63	3	2	NaN	NaN	NaN	0.8439	1	3923	3923		3.1533	0	1	6645.8			12351	7435	7163	7309	9758	9758					0.04872397102906234
KVGAGPRG	8	Unmodified						0	0	0		ENST00000527696.5_1_11:209264-209561:+|nuORF;ENST00000532373.1_1_11:208854-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.436598	740.429321	0.059739	4.4293E-05	1.8694	0.0013861	1.9292	0.0014304	741.4375221313824	56.947	0.047932	56.946	56.922	56.97	-0.00056458	564	43	1.2837118	0.025159717	1.2821923	261.87323		5.1325073	-0.0011671	-0.00051889	-0.00075972	NaN	3.1533	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6109.4			12352	7435	7163	7309							0.04872397102906234
KVGDQRPR	8	Unmodified	_KVGDQRPR_					0	0	0			REV__ENST00000507142.5_2_4:170533219-170533441:-|nuORF	REV__ENST00000507142.5_2_4:170533219-170533441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.27523236430005	2	478.275232	954.535912	1.7147	0.0008201	-9.1509	-0.0043767	-7.4362	-0.0035566	478.2713667820743	18.914	0.33639	18.9	18.828	19.164	-0.014059	1323	82	0.8228144	0.049868286	0.82129496	334.32614	0	20.262482						530	15	5	NaN	NaN	NaN	0.74229	1	7054	7054		16.417	2.3751	1	84987	+		12353	12540	7164	7310	9759	9759					0.05682527597423359
KVGDQRPR	8	Unmodified						0	0	0			REV__ENST00000507142.5_2_4:170533219-170533441:-|nuORF	REV__ENST00000507142.5_2_4:170533219-170533441:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.275232	954.535912	1.7147	0.0008201	-9.1509	-0.0043767	-7.4362	-0.0035566	478.2713667820743	18.914	0.33639	18.9	18.828	19.164	-0.014059	1323	82	0.8228144	0.049868286	0.82129496	334.32614		20.262482	0.039722	-0.00038295	0.00016367	NaN	16.417	530	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84987	+		12354	12540	7164	7310							0.05682527597423359
KVGGGGRE	8	Unmodified	_KVGGGGRE_					0	0	0			REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.20902678605	2	380.209027	758.403501	1.7585	0.00066861	4.5871	0.0017441	6.3457	0.0024127	380.21095466604424	18.938	0.14421	18.924	18.852	18.996	-0.014059	1533	73	0.6930556	0.044643342	0.6915362	282.63388	0	18.205933						142	7	2	NaN	NaN	NaN	0.83582	1	4118	4118		4.4131	0	1	10618	+		12355	11526	7165	7311	9760	9760					0.01463502860610788
KVGGGGRE	8	Unmodified						0	0	0			REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	380.209027	758.403501	1.9228	0.00073106	3.0052	0.0011426	4.928	0.0018737	380.2104347401023	18.796	0.14401	18.796	18.748	18.892	0	1536	64	0.69119483	0.039073586	0.69119483	281.875		15.93454	-0.063751	-0.00048301	-0.0001707	NaN	4.4131	139	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9266.5	+		12356	11526	7165	7311							0.01463502860610788
KVGGGGRE	8	Unmodified						0	0	0			REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	380.209027	758.403501	1.7585	0.00066861	4.5871	0.0017441	6.3457	0.0024127	380.21095466604424	18.938	0.14421	18.924	18.852	18.996	-0.014059	1533	73	0.6930556	0.044643342	0.6915362	282.63388		18.205933	0.063751	0.00071991	0.0001707	NaN	4.4131	142	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10618	+		12357	11526	7165	7311							0.01463502860610788
KVGGIAAG	8	Unmodified	_KVGGIAAG_					0	0	0			REV__ENSG00000214872|ENST00000527972|SMTNL1	REV__ENSG00000214872|ENST00000527972|SMTNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.4039008136001	1	672.403901	671.396624	-0.1982	-0.00013327	10.025	0.0067407	9.8266	0.0066074	672.4098871726943	58.362	0.095997	58.362	58.362	58.458	-0.00048065	708	49	1.1972283	0.028901935	1.1957089	244.68684	0	5.906906						67	5	2	NaN	NaN	NaN	0.84876	1	2555	2555		0.39566	0	1	4713.5	+		12358	11295	7166	7312	9761	9761					0.04778189980049774
KVGPAGCP	8	Unmodified	_KVGPAGCP_					0	0	0			REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.3759715036001	1	728.375972	727.368695	0.38902	0.00028335	8.7537	0.0063759	9.1427	0.0066593	728.382131598609	43.871	0.16766	43.882	43.81	43.978	0.011425	537	49	1.2998781	0.02872324	1.2983587	265.2576	0	5.861389						157	8	2	NaN	NaN	NaN	0.82332	1	3641	3641		6.0903	2.5171	1	13300	+		12359	12679	7167	7313	9762	9762					-0.005894562716889595
KVGPAGCP	8	Unmodified						0	0	0			REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	728.375972	727.368695	1.0635	0.00077463	8.826	0.0064287	9.8895	0.0072033	728.3836665525603	43.849	0.16773	43.849	43.825	43.992	0	534	46	1.3016734	0.026932359	1.3016734	265.62396		5.4959106	-0.016686	2.8412E-05	0.0016574	NaN	6.0903	107	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9048.1	+		12360	12679	7167	7313							-0.005894562716889595
KVGPAGCP	8	Unmodified						0	0	0			REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	728.375972	727.368695	0.38902	0.00028335	8.7537	0.0063759	9.1427	0.0066593	728.382131598609	43.871	0.16766	43.882	43.81	43.978	0.011425	537	49	1.2998781	0.02872324	1.2983587	265.2576		5.861389	0.016686	-2.4302E-05	-0.0016574	NaN	6.0903	157	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13300	+		12361	12679	7167	7313							-0.005894562716889595
KVGSGGFG	8	Unmodified	_KVGSGGFG_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.E97Gfs*65|1|0.22|ENSG00000183421|chr21:41756709-41756710|-/C|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073001	1	708.367515	707.360239	0.43673	0.00030936	4.1526	0.0029415	4.5893	0.0032509	708.3700379694452	35.072	0.048275	35.072	35.023	35.072	0	705	85	1.1990347	0.05054593	1.1990347	244.8071	0	10.319962						94	3	2	NaN	NaN	NaN	0.84692	1	3359	3359		1.4396	1.0439	1	8740.5			12362	5306	7168	7314	9763	9763					-0.005146869166651413
KVHTAEIK	8	Unmodified	_KVHTAEIK_					0	0	0			REV__ENST00000453839.5_1_2:61014200-61024278:+|nuORF	REV__ENST00000453839.5_1_2:61014200-61024278:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	925.5465423054002	1	925.546542	924.539266	-0.27349	-0.00025313	1.7049	0.0015779	1.4314	0.0013248	925.5485376282109	46.004	0.16793	46.015	45.967	46.135	0.010719	288	46	1.4482387	0.02669251	1.4467193	294.36447	0	5.425415						117	8	2	NaN	NaN	NaN	0.81756	1	6368	6368		6.8632	0	1	8604.3	+		12363	9191	7169	7315	9764	9764					0.0739777765143117
KVIIYPRCLR	10	Unmodified	_KVIIYPRCLR_					0	0	0			REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1260.7609089522998	1	1260.76091	1259.75363	1.5431	0.0019455	0.23954	0.000302	1.7827	0.0022475	1260.7615799594007	39.404	0.096062	39.409	39.409	39.505	0.0053329	615	82	1.2531329	0.04863906	1.2516136	253.71118	0	9.847534						156	5	2	NaN	NaN	NaN	0.78146	1	17219	17219		0.16111	0	1	12943	+		12364	8416	7170	7316	9765	9765					0.13414581475649356
KVIIYPRCLR	10	Unmodified						0	0	0			REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1260.76091	1259.75363	1.7125	0.0021591	-1.3892	-0.0017515	0.32331	0.00040761	1260.7592034510958	39.43	0.096107	39.43	39.406	39.502	0	624	70	1.247731	0.041433334	1.247731	252.61748		8.388641	0.010438	-0.0011272	-0.0019413	NaN	0.16111	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6951.8	+		12365	8416	7170	7316							0.13414581475649356
KVIIYPRCLR	10	Unmodified						0	0	0			REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	REV__nc|ENSG00000013503|Q9NW08-2|POLR3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1260.76091	1259.75363	1.5431	0.0019455	0.23954	0.000302	1.7827	0.0022475	1260.7615799594007	39.404	0.096062	39.409	39.409	39.505	0.0053329	615	82	1.2531329	0.04863906	1.2516136	253.71118		9.847534	-0.010438	0.0009263	0.0019413	NaN	0.16111	156	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12943	+		12366	8416	7170	7316							0.13414581475649356
KVKKMTVT	8	Unmodified	_KVKKMTVT_					0	0	0			REV__ENST00000547214.1_1_12:98925583-98925628:+|nuORF	REV__ENST00000547214.1_1_12:98925583-98925628:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5753995928002	1	934.5754	933.568123	0.98299	0.00091868	8.383	0.0078345	9.366	0.0087532	934.583844037363	41.641	0.24055	41.649	41.649	41.889	0.0082588	888	52	1.088497	0.03090489	1.0869776	221.21309	0	6.280731						224	11	2	NaN	NaN	NaN	0.84756	1	6563	6563		1.072	0	1	17561	+		12367	12722	7171	7317	9766	9766					0.09868178956207885
KVKLQFKALR	10	Unmodified	_KVKLQFKALR_					0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1230.8044883265	1	1230.80449	1229.79721	3.1712	0.0039031	-1.5627	-0.0019234	1.6085	0.0019797	1230.800759483609	39.237	0.7946	39.237	39.044	39.839	0	66	790	1.579413	0.4701774	1.579413	319.85492	0	95.218						13108	34	4	NaN	NaN	NaN	0.77421	1	17257	17257		1.9246	0	1	56286000	+		12368	10092	7172	7318	9767	9767					0.19150514244438455
KVLRHCVSDKV	11	Unmodified	_KVLRHCVSDKV_					0	0	0		ENST00000463884.1_1_X:153555730-153558035:+|nuORF;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	ENST00000463884.1_1_X:153555730-153558035:+|nuORF	ENST00000463884.1_1_X:153555730-153558035:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.36626409705	2	642.366264	1282.71798	2.3072	0.0014821	-7.1852	-0.0046155	-4.8779	-0.0031334	642.3632706384885	41.45	1.562	41.45	40.729	42.291	0	1224	109	0.883646	0.06625068	0.883646	357.73605	0	26.820953						7210	66	6	NaN	NaN	NaN	0.74155	1	18478	18478		4.7291	0	1	7133900			12369	359	7173	7319	9768	9768					0.0879249922800227
KVLRHCVSDKV	11	Unmodified						0	0	0		ENST00000463884.1_1_X:153555730-153558035:+|nuORF;nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	ENST00000463884.1_1_X:153555730-153558035:+|nuORF	ENST00000463884.1_1_X:153555730-153558035:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	642.366264	1282.71798	2.9161	0.0018732	-7.1354	-0.0045835	-4.2192	-0.0027103	642.3631088794118	41.328	1.4183	41.336	40.783	42.201	0.0082626	1224	106	0.883646	0.064413846	0.88212657	357.73605		26.077362	-0.056806	3.9192E-05	-0.00075972	NaN	4.7291	4458	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5956800			12370	359	7173	7319							0.0879249922800227
KVMDWYQTR	9	Unmodified	_KVMDWYQTR_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.53773572119997	3	409.537736	1225.59138	1.9084	0.00078157	-2.1815	-0.00089341	-0.27309	-0.00011184	409.5369345161592	15.915	0.14363	15.903	15.807	15.951	-0.012611	1479	46	0.72651637	0.027855158	0.7249969	441.40027	0	16.923615						126	7	2	NaN	NaN	NaN	0.56671	1	16437	16437		3.9281	0	1	13681			12371	3753	7174	7320	9769	9769					-0.012394269971309768
KVNEVECLIHH	11	Unmodified	_KVNEVECLIHH_					0	0	0		MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.8400791363001	2	660.840079	1319.66561	1.3399	0.00088548	-11.062	-0.0073102	-9.7221	-0.0064247	660.8325249841794	24.767	0.16891	24.767	24.695	24.864	0	1098	40	0.960755	0.02381432	0.960755	388.8369	0	9.638123						88	8	2	NaN	NaN	NaN	0.6875	1	19106	19106		8.2775	1.2932	1	8252.1			12372	7872	7175	7321	9770	9770					0.018559160944050745
KVNEVECLIHH	11	Unmodified						0	0	0		MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	MAOB|p.R87C|1|0.18|ENSG00000069535|chrX:43838888-43838888|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	660.840079	1319.66561	2.3928	0.0015813	-5.7879	-0.0038249	-3.3951	-0.0022436	660.8375093935001	24.791	0.048264	24.779	24.755	24.803	-0.012394	1101	25	0.95892316	0.01465261	0.9574037	388.0955		5.9302063	0.0057857	0.0043956	-0.0016757	NaN	8.2775	28	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2657			12373	7872	7175	7321							0.018559160944050745
KVPGFPKRFTV	11	Unmodified	_KVPGFPKRFTV_					0	0	0		ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.38224012475	2	638.38224	1274.74993	2.01	0.0012832	-2.7986	-0.0017866	-0.78859	-0.00050342	638.381487623514	19.108	0.023981	19.108	19.108	19.132	0	1095	52	0.9625867	0.031128407	0.9625867	389.7204	0	12.602875						58	2	2	NaN	NaN	NaN	0.77858	1	18324	18324		0.11306	0.018288	1	3388			12374	6103	7176	7322	9771	9771					0.12354234973440725
KVTLVAEPG	9	Unmodified	_KVTLVAEPG_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.5353089171	1	913.535309	912.528032	1.7638	0.0016113	-0.97652	-0.00089209	0.78729	0.00071922	913.5346625134148	26.674	0.12074	26.674	26.65	26.77	0	336	109	1.419741	0.06416094	1.419741	288.62787	0	13.043671						219	6	3	NaN	NaN	NaN	0.030669	1	6286	6286		58.235	10.233	1	32771	+		12375	9357	7177	7323	9772	9772					0.06826955557278325
KVTLVAEPG	9	Unmodified						0	0	0			REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	913.535309	912.528032	1.7638	0.0016113	-0.97652	-0.00089209	0.78729	0.00071922	913.5346625134148	26.674	0.12074	26.674	26.65	26.77	0	336	109	1.419741	0.06416094	1.419741	288.62787		13.043671	0.0054952	-0.00058431	0.00075972	NaN	58.235	219	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32771	+		12376	9357	7177	7323							0.06826955557278325
KVTSSEFHPK	10	Unmodified	_KVTSSEFHPK_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.2083840194666	3	387.208384	1158.60332	1.543	0.00059747	6.4983	0.0025162	8.0413	0.0031137	387.2101996984394	13.349	0.12013	13.349	13.3	13.421	0	1455	37	0.7413668	0.02226597	0.7413668	450.71213	0	13.53656						99	6	2	NaN	NaN	NaN	0.62092	1	15104	15104		7.8039	0.51457	1	10450	+		12377	8670	7178	7324	9773	9773					0.03036513017696052
KVVEPLKTYG	10	Unmodified	_KVVEPLKTYG_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.5570132061667	3	378.557013	1132.64921	1.4348	0.00054316	-1.1637	-0.00044052	0.27113	0.00010264	378.55781825776546	12.244	0.072036	12.244	12.244	12.316	0	1476	28	0.72837335	0.016711295	0.72837335	442.93198	0	10.162323						56	4	3	NaN	NaN	NaN	0.70677	1	14207	14207		3.9087	0.31414	1	3911.7			12378	5547	7179	7325	9774	9774					0.0881915819995811
KVVNGAAA	8	Unmodified	_KVVNGAAA_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.4253645371999	1	729.425365	728.418088	1.1888	0.00086714	4.4371	0.0032365	5.6259	0.0041037	729.4281605889015	27.808	0.12073	27.798	27.774	27.895	-0.009552	600	52	1.2621325	0.030591846	1.2606131	257.54828	0	6.2425385						106	6	2	NaN	NaN	NaN	0.84455	1	3667	3667		2.7852	1.1148	1	9797.7			12379	2028	7180	7326	9775	9775					0.0430157500874202
KVVPRFAS	8	Unmodified	_KVVPRFAS_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.541062997	1	903.541063	902.533787	0.043626	3.9417E-05	-9.0656	-0.0081911	-9.022	-0.0081517	903.532156539408	56.059	0.072025	56.058	56.034	56.106	-0.00056458	342	55	1.4161754	0.032090664	1.4146559	287.95038	0	6.5249634						121	4	3	NaN	NaN	NaN	0.84455	1	6008	6008		2.7852	1.3456	1	13317	+		12380	11068	7181	7327	9776	9776					0.07862098859607158
KVYDYLCRQR	10	Unmodified	_KVYDYLCRQR_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3480713439	2	672.348071	1342.68159	0.86939	0.00058453	5.1721	0.0034775	6.0415	0.004062	672.8517002736675	40.753	0.095951	40.753	40.729	40.825	0	1218	31	0.8873258	0.018399	0.8873258	359.05478	0	7.4451294						55	5	3	NaN	NaN	NaN	0.77024	1	19458	19458		2.8895	1.1873	1	3249.3	+		12381	9017	7182	7328	9777	9777					0.023956223312779912
KVYDYLCRQR	10	Unmodified						0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	672.348071	1342.68159	0.86939	0.00058453	5.1721	0.0034775	6.0415	0.004062	672.8517002736675	40.753	0.095951	40.753	40.729	40.825	0	1218	31	0.8873258	0.018399	0.8873258	359.05478		7.4451294	0.033611	-0.0016254	-0.00016008	NaN	2.8895	55	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3249.3	+		12382	9017	7182	7328							0.023956223312779912
KVYDYLCRQR	10	Unmodified						0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.348071	1342.68159	1.0274	0.00069074	7.3195	0.0049212	8.3468	0.005612	672.3528667222156	40.679	0.095943	40.685	40.685	40.781	0.0067558	1215	31	0.8891654	0.018396974	0.88764596	359.79916		7.4443054	-0.033611	0.0012622	0.00016008	NaN	2.8895	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6335.4	+		12383	9017	7182	7328							0.023956223312779912
KVYKHNRLY	9	Unmodified	_KVYKHNRLY_					0	0	0			REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.56813514413335	3	407.568135	1219.68258	1.7696	0.00072124	-11.098	-0.0045233	-9.3286	-0.003802	407.89754979492494	16.395	0.095888	16.382	16.31	16.406	-0.012993	1428	37	0.7580582	0.022244275	0.75653875	460.58856	0	13.515381						74	5	2	NaN	NaN	NaN	0.56377	1	16297	16297		6.9844	2.3669	1	11803	+		12384	13469	7183	7329	9778	9778					0.08152204762518522
KVYYLNGTFK	10	Unmodified	_KVYYLNGTFK_					0	0	0		tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.5606462185999	3	411.560646	1231.66011	1.6102	0.00066271	-8.9384	-0.0036787	-7.3282	-0.003016	411.5577305824076	17.141	0.14409	17.141	17.021	17.165	0	1467	61	0.7339432	0.037118077	0.7339432	445.8881	0	22.55014						111	7	2	NaN	NaN	NaN	0.74182	1	17320	17320		2.4611	0.78059	1	9004.7			12385	14000	7184	7330	9779	9779					0.05354560574187417
KWAESGRFYPF	11	Unmodified	_KWAESGRFYPF_					0	0	0		ENSG00000016402|ENST00000316649|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3433119295	2	694.343312	1386.67207	1.5393	0.0010688	5.0634	0.0035157	6.6026	0.0045845	694.8468899487032	22.501	0.072247	22.501	22.453	22.525	0	1065	40	0.9808926	0.023783565	0.9808926	396.7881	0	9.62088						75	4	2	NaN	NaN	NaN	0.77466	1	19945	19945		1.1768	0.25801	1	7952.3			12386	446	7185	7331	9780	9780					-0.0057982268258456315
KWEEWKQVWE	10	Unmodified	_KWEEWKQVWE_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.2383432327333	3	483.238343	1446.6932	1.8804	0.00090868	5.7925	0.0027991	7.6728	0.0037078	483.24072541753236	19.948	0.14425	19.948	19.924	20.069	0	1461	31	0.7376554	0.018559039	0.7376554	447.4053	0	11.25647						99	7	2	NaN	NaN	NaN	0.76854	1	20374	20374		3.3044	0.84329	1	11223			12387	4807	7186	7332	9781	9781					-0.012278573737376064
KWEMAAQL	8	Unmodified	_KWEMAAQL_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4920638939001	1	976.492064	975.484787	2.2598	0.0022067	1.2944	0.001264	3.5542	0.0034707	976.4936069520635	23.2	0.072304	23.2	23.176	23.248	0	252	46	1.4695803	0.026655674	1.4695803	298.4733	0	5.4138184						81	4	2	NaN	NaN	NaN	0.75561	1	7759	7759		15.175	1.4383	1	5737.2			12388	1215	7187	7333	9782	9782					-0.003935574916454243
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.37167543845	2	650.371675	1298.7288	1.2933	0.0008411	-3.1986	-0.0020803	-1.9054	-0.0012392	650.8712957930207	24.213	0.21725	24.213	24.092	24.309	0	1110	43	0.95342636	0.025655925	0.95342636	385.93527	0	10.385193						215	10	3	NaN	NaN	NaN	0.042816	1	18760	18760		49.961	31.992	1	21438			12389	2709	7188	7334	9783	9783					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.9168757811666	3	433.916876	1298.7288	1.5437	0.00066984	-2.2101	-0.00095901	-0.66642	-0.00028917	433.9160203998272	24.164	0.36201	24.164	24.068	24.43	0	1389	55	0.7821392	0.033319414	0.7821392	474.8966	0	20.230804						804	16	5	NaN	NaN	NaN	0.0018626	1	18761	18761		86.792	73.358	1	552770			12390	2709	7188	7334	9784	9784					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.9168757811666	3	433.916876	1298.7288	0.93805	0.00040703	-2.6411	-0.001146	-1.7031	-0.000739	433.91559922245335	26.842	0.096565	26.832	26.783	26.88	-0.010645	1389	43	0.7821392	0.025917947	0.78061974	474.8966	0	15.736755						121	5	2	NaN	NaN	NaN	0.0023856	1	17927	17927		104.2	75.962	1	83770			12391	2709	7188	7334	9785	9785					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.9168757811666	3	433.916876	1298.7288	1.0933	0.0004744	-1.5962	-0.00069263	-0.50294	-0.00021823	433.91610784136566	27.108	0.5792	27.098	26.929	27.508	-0.010126	1386	52	0.78399014	0.031466663	0.7824707	476.02048	0	19.105804						515	25	4	NaN	NaN	NaN	0.023828	1	17929	17929		58.398	49.942	1	174320			12392	2709	7188	7334	9786	9786					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.9168757811666	3	433.916876	1298.7288	1.883	0.00081706	-2.2006	-0.00095487	-0.31758	-0.0001378	434.2496684969848	25.974	0.12067	25.962	25.865	25.986	-0.0116	1392	34	0.780288	0.020365238	0.77876854	473.7726	0	12.365265						118	6	3	NaN	NaN	NaN	0.074859	1	17930	17930		34.454	27.837	1	10732			12393	2709	7188	7334	9787	9787					0.09138269664572363
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.9168757811666	3	433.916876	1298.7288	0.93886	0.00040739	-1.1077	-0.00048064	-0.16882	-7.3255E-05	433.9164240110666	26.722	0.0965	26.711	26.639	26.735	-0.010645	1392	43	0.780288	0.025917947	0.77876854	473.7726	0	15.736755						125	5	2	NaN	NaN	NaN	0.011942	1	17932	17932		84.233	68.758	1	80664			12394	2709	7188	7334	9788	9788					0.09138269664572363
KWFFQKLRF	9	Unmodified						0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	433.916876	1298.7288	1.9815	0.00085981	-9.4756	-0.0041116	-7.4941	-0.0032518	434.2478721285334	26.07	0.096571	26.07	26.022	26.119	0	1398	28	0.77658504	0.016664267	0.77658504	471.5243		10.118134	0.054182	-0.006186	-0.0010918	NaN	34.454	48	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2323.1			12395	2709	7188	7334							0.09138269664572363
KWFSTPLLL	9	Unmodified	_KWFSTPLLL_					0	0	0		nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant	nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8262350920502	2	552.826235	1103.63792	0.75334	0.00041647	1.2456	0.00068858	1.9989	0.0011051	552.8272293067184	30.825	0.12064	30.825	30.801	30.922	0	1203	55	0.8965218	0.033093095	0.8965218	363.57535	0	13.420593						142	6	2	NaN	NaN	NaN	0.042816	1	13009	13009		49.961	13.375	1	33488			12396	3036	7189	7335	9789	9789					0.09024380896494222
KWFSTPLLL	9	Unmodified						0	0	0		nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant	nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.826235	1103.63792	1.1094	0.00061331	-0.55763	-0.00030827	0.55178	0.00030504	552.8258805796515	30.896	0.2655	30.891	30.794	31.06	-0.0057545	1200	46	0.89836043	0.027576089	0.896841	364.32098		11.183197	0.032785	-0.0013314	0.00015958	NaN	49.961	214	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37505			12397	3036	7189	7335							0.09024380896494222
KWFTDTSIILF	11	Unmodified	_KWFTDTSIILF_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENST00000564798.2_2_16:56374475-56377859:+|nuORF;nc|ENSG00000127955|P63096-2|GNAI1;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.8713708772001	2	685.871371	1369.72819	1.2752	0.00087462	-3.8967	-0.0026726	-2.6215	-0.001798	685.8695556492436	33.383	0.14479	33.383	33.359	33.504	0	1056	61	0.9863805	0.036580205	0.9863805	399.0568	0	14.799133						257	7	4	NaN	NaN	NaN	0.19064	1	19796	19796		31.198	6.636	1	48356			12398	7930	7190	7336	9790	9790					0.05811385434230942
KWFTDTSIILF	11	Unmodified	_KWFTDTSIILF_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENST00000564798.2_2_16:56374475-56377859:+|nuORF;nc|ENSG00000127955|P63096-2|GNAI1;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.8713708772001	2	685.871371	1369.72819	0.75075	0.00051492	-1.689	-0.0011584	-0.93824	-0.00064351	685.8698495792031	33.502	0.21721	33.501	33.404	33.621	-0.0018463	1047	76	0.99186665	0.04572779	0.9903472	401.2763	0	18.499939						199	10	2	NaN	NaN	NaN	0.20668	1	18871	18871		29.706	5.306	1	31386			12399	7930	7190	7336	9791	9791					0.05811385434230942
KWFTETSIILF	11	Unmodified	_KWFTETSIILF_					0	0	0		ENSG00000065135|ENST00000369851|GNAI3	ENSG00000065135|ENST00000369851|GNAI3	ENSG00000065135|ENST00000369851|GNAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8791959093002	2	692.879196	1383.74384	1.0996	0.00076188	-3.3843	-0.0023449	-2.2847	-0.001583	692.8778773320963	32.925	0.14481	32.925	32.852	32.997	0	1062	64	0.9827221	0.038419545	0.9827221	397.5365	0	15.541718						222	7	3	NaN	NaN	NaN	0.3345	1	19926	19926		24.393	9.5394	1	27546			12400	680	7191	7337	9792	9792					0.06731671951297358
KWFTETSIILF	11	Unmodified	_KWFTETSIILF_					0	0	0		ENSG00000065135|ENST00000369851|GNAI3	ENSG00000065135|ENST00000369851|GNAI3	ENSG00000065135|ENST00000369851|GNAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8791959093002	2	692.879196	1383.74384	0.78751	0.00054565	-2.5457	-0.0017638	-1.7581	-0.0012182	692.8783354376546	33.02	0.26522	33.018	32.921	33.186	-0.0024796	1056	49	0.9863805	0.029264152	0.9848611	399.01642	0	11.838104						268	12	4	NaN	NaN	NaN	0.20668	1	18996	18996		29.706	2.6598	1	23025			12401	680	7191	7337	9793	9793					0.06731671951297358
KWLEPLKNLRF	11	Unmodified	_KWLEPLKNLRF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.95387811863327	3	481.953878	1442.8398	1.341	0.0006463	-2.8993	-0.0013973	-1.5583	-0.00075104	481.95164846922546	24.381	0.072371	24.381	24.357	24.43	0	1386	31	0.78399014	0.018508792	0.78399014	475.52048	0	11.226288						64	4	2	NaN	NaN	NaN	0.35694	1	20341	20341		23.591	19.047	1	6246.7			12402	4358	7192	7338	9794	9794					0.13609864582008413
KWLEPLKNLRF	11	Unmodified	_KWLEPLKNLRF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.95387811863327	3	481.953878	1442.8398	1.3127	0.00063268	-1.2735	-0.00061379	0.0392	1.8893E-05	482.2876820812588	24.381	0.14474	24.381	24.333	24.478	0	1284	34	0.8468043	0.020285964	0.8468043	513.6197	0	12.30423						121	7	2	NaN	NaN	NaN	0.22589	1	20342	20342		28.279	15.407	1	16158			12403	4358	7192	7338	9795	9795					0.13609864582008413
KWLLYPTEI	9	Unmodified	_KWLLYPTEI_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.8289747462501	2	581.828975	1161.6434	2.3382	0.0013604	-1.5272	-0.00088858	0.81094	0.00047183	581.8283034401354	28.243	0.193	28.243	28.219	28.412	0	1170	61	0.91673553	0.03673041	0.91673553	371.5438	0	14.886475						468	9	6	NaN	NaN	NaN	0.0034808	1	15214	15214		106.56	66.404	1	222220			12404	335	7193	7339	9796	9796					0.0690405968828145
KWLLYPTEI	9	Unmodified	_KWLLYPTEI_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8289747462501	2	581.828975	1161.6434	1.6279	0.00094717	-2.5192	-0.0014657	-0.89128	-0.00051857	581.8277643787278	28.29	0.2413	28.281	28.209	28.45	-0.0089779	1170	61	0.91673553	0.036734402	0.9152161	371.54382	0	14.888092						500	11	5	NaN	NaN	NaN	0.0062755	1	14697	14697		99.986	66.56	1	230860			12405	335	7193	7339	9797	9797					0.0690405968828145
KWLSFLSKN	9	Unmodified	_KWLSFLSKN_					0	0	0			REV__ENST00000484333.1_1_10:46113605-46116262:-|nuORF	REV__ENST00000484333.1_1_10:46113605-46116262:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8189413762001	2	561.818941	1121.62333	1.0915	0.00061321	4.5135	0.0025358	5.605	0.003149	561.8216589362844	27.156	0.1448	27.146	27.098	27.242	-0.010126	1170	64	0.91673553	0.03858155	0.9152161	371.69928	0	15.6432495						150	7	2	NaN	NaN	NaN	0.34922	1	13355	13355		15.822	0.35925	1	22695	+		12406	12408	7194	7340	9798	9798					0.06738308748322197
KWNKHEDV	8	Unmodified	_KWNKHEDV_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2670729812	2	528.267073	1054.51959	0.72011	0.00038041	-1.4705	-0.00077682	-0.75039	-0.00039641	528.2661400763508	31.404	0.072399	31.404	31.38	31.452	0	1203	109	0.8965218	0.06627929	0.8965218	363.78415	0	26.894348						149	4	3	NaN	NaN	NaN	0.7718	1	10834	10834		13.003	0	1	13343			12407	4798	7195	7341	9799	9799					-0.005485983593416677
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7876412478	2	545.787641	1089.56073	2.0779	0.0011341	-2.4649	-0.0013453	-0.38707	-0.00021126	545.786606591576	23.031	0.16856	23.031	22.887	23.055	0	1287	91	0.8449601	0.055298448	0.8449601	342.71964	0	22.42929						325	8	3	NaN	NaN	NaN	0.00017865	1	12377	12377		104.2	54.237	1	143430			12408	1404	7196	7342	9800	9800					0.019531626801381208
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7876412478	2	545.787641	1089.56073	1.8464	0.0010077	-2.1951	-0.0011981	-0.34871	-0.00019032	545.7863504241952	23.079	0.096298	23.065	22.993	23.09	-0.013294	1287	130	0.8449601	0.07920545	0.84344065	342.71964	0	32.1261						263	5	2	NaN	NaN	NaN	0.026551	1	12070	12070		60.984	33.123	1	149030			12409	1404	7196	7342	9801	9801					0.019531626801381208
KWPDRITLL	9	Unmodified	_KWPDRITLL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.34004095905	2	571.340041	1140.66553	1.3636	0.00077905	-6.0657	-0.0034656	-4.7021	-0.0026865	571.3377881022255	24.381	0.12062	24.381	24.381	24.502	0	1197	64	0.9001988	0.03861904	0.9001988	364.92038	0	15.655304						146	6	3	NaN	NaN	NaN	0.16939	1	14485	14485		27.296	5.4612	1	37481			12410	2214	7197	7343	9802	9802					0.10082284156692367
KWPDRITLL	9	Unmodified	_KWPDRITLL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.34004095905	2	571.340041	1140.66553	1.1134	0.00063616	-2.6178	-0.0014957	-1.5044	-0.00085952	571.3386940517805	24.478	0.26532	24.465	24.417	24.682	-0.012747	1197	55	0.9001988	0.033093095	0.8986794	364.92035	0	13.415192						336	12	3	NaN	NaN	NaN	0.10945	1	14015	14015		34.454	3.8439	1	67396			12411	2214	7197	7343	9803	9803					0.10082284156692367
KWSLVQLH	8	Unmodified	_KWSLVQLH_					0	0	0		ENST00000514745.5_1_4:57219701-57248665:-|nuORF	ENST00000514745.5_1_4:57219701-57248665:-|nuORF	ENST00000514745.5_1_4:57219701-57248665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7927266257	2	505.792727	1009.5709	1.2946	0.00065479	-1.5515	-0.00078474	-0.25693	-0.00012995	505.7916933737412	24.357	0.14478	24.357	24.285	24.43	0	1506	85	0.70979416	0.052044332	0.70979416	288.1804	0	21.13031						201	7	3	NaN	NaN	NaN	0.69898	1	8970	8970		19.118	1.3193	1	15304			12412	7371	7198	7344	9804	9804					0.06649770405374511
KWSTIIENNF	10	Unmodified	_KWSTIIENNF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3220451711501	2	626.322045	1250.62954	0.90034	0.00056391	-3.9136	-0.0024512	-3.0132	-0.0018872	626.3195636373838	24.671	0.096466	24.658	24.634	24.731	-0.012392	1143	64	0.9332562	0.03852743	0.93173677	377.92352	0	15.601746						135	5	3	NaN	NaN	NaN	0.62092	1	17034	17034		13.463	5.9227	1	21885			12413	3963	7199	7345	9805	9805					0.014247821891785861
KWWKSFRI	8	Unmodified	_KWWKSFRI_					0	0	0		ENST00000461642.2_1_20:25470551-25477423:-|nuORF	ENST00000461642.2_1_20:25470551-25477423:-|nuORF	ENST00000461642.2_1_20:25470551-25477423:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.2221877877	3	384.222188	1149.64473	1.9009	0.00073038	6.0405	0.0023209	7.9414	0.0030513	384.22487738166876	23.248	0.1206	23.248	23.224	23.345	0	1440	58	0.7506418	0.035229623	0.7506418	456.3926	0	21.419739						251	6	4	NaN	NaN	NaN	0.83582	1	14805	14805		2.8895	1.5198	1	49014			12414	7080	7200	7346	9806	9806					0.07589738567685345
KWWQKYQKRKF	11	Unmodified	_KWWQKYQKRKF_					0	0	0		nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000482844.5_1_3:3196419-3214524:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF	nc|ENSG00000113851|Q96SW2-2|CRBN	nc|ENSG00000113851|Q96SW2-2|CRBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.2320392589749	4	407.232039	1624.89905	1.3584	0.0005532	8.1934	0.0033366	9.5518	0.0038898	407.4861814152036	13.276	0.14413	13.276	13.228	13.373	0	1470	40	0.7320868	0.024133325	0.7320868	591.4194	0	19.496155						178	7	4	NaN	NaN	NaN	0.76975	1	20777	20777		2.0359	1.7013	1	19999			12415	1935	7201	7347	9807	9807					0.11159760596160595
KWWWWPQWWLW	11	Unmodified	_KWWWWPQWWLW_					0	0	0			REV__chr12:54282823-54283827|522|38.34|0.0|21.87|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|522|38.34|0.0|21.87|+|1|HNRNPA1,HNRNPA1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.6259843740334	3	596.625984	1786.85612	1.0479	0.00062522	-10.735	-0.0064048	-9.6871	-0.0057796	596.6195506526387	20.525	0.26466	20.525	20.429	20.694	0	1293	61	0.84127116	0.03690952	0.84127116	509.33078	0	22.34613						247	12	2	NaN	NaN	NaN	0.77891	1	20890	20890		0.43218	0.41262	1	28439	+		12416	8211	7202	7348	9808	9808					-0.005830094612292669
KWYDRRDYVF	10	Unmodified	_KWYDRRDYVF_					0	0	0		nc|ENSG00000110958|Q15185-2|PTGES3;nc|ENSG00000110958|Q15185-3|PTGES3;nc|ENSG00000110958|Q15185-4|PTGES3;ENSG00000110958|ENST00000262033|PTGES3;ENST00000537473.2_1_12:57059942-57081218:-|nuORF	nc|ENSG00000110958|Q15185-2|PTGES3	nc|ENSG00000110958|Q15185-2|PTGES3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.2420876955	3	483.242088	1446.70443	1.8626	0.00090008	-1.5029	-0.00072627	0.35967	0.00017381	483.575038144671	20.405	0.1686	20.391	20.271	20.439	-0.014141	1461	31	0.7376554	0.018561065	0.73613596	447.4053	0	11.257721						111	8	2	NaN	NaN	NaN	0.67758	1	19400	19400		9.5854	6.7964	1	12093			12417	1788	7203	7349	9809	9809					-0.0010503527958007908
KWYDRRDYVF	10	Unmodified						0	0	0		nc|ENSG00000110958|Q15185-2|PTGES3;nc|ENSG00000110958|Q15185-3|PTGES3;nc|ENSG00000110958|Q15185-4|PTGES3;ENSG00000110958|ENST00000262033|PTGES3;ENST00000537473.2_1_12:57059942-57081218:-|nuORF	nc|ENSG00000110958|Q15185-2|PTGES3	nc|ENSG00000110958|Q15185-2|PTGES3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	483.242088	1446.70443	2.345	0.0011332	-2.5487	-0.0012316	-0.20367	-9.8422E-05	483.57406819079705	20.141	0.024021	20.141	20.141	20.165	0	1461	19	0.7376554	0.011136591	0.7376554	447.4053		6.7546387	-0.12514	-0.0011012	0.00075972	NaN	9.5854	23	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1399.7			12418	1788	7203	7349							-0.0010503527958007908
KWYIPLTDLSF	11	Unmodified	_KWYIPLTDLSF_					0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.8713708772	2	691.871371	1381.72819	0.87449	0.00060503	-4.2787	-0.0029603	-3.4042	-0.0023553	691.8685422266709	33.938	0.096539	33.938	33.914	34.01	0	1065	37	0.9808926	0.021955252	0.9808926	396.80215	0	8.881561						116	5	3	NaN	NaN	NaN	0.14414	1	19911	19911		35.523	25.911	1	11202			12419	5484	7204	7350	9810	9810					0.052593854342148916
KWYIPLTDLSF	11	Unmodified	_KWYIPLTDLSF_					0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.8713708772	2	691.871371	1381.72819	0.86079	0.00059555	-3.4423	-0.0023816	-2.5815	-0.0017861	691.8692250851856	34.009	0.096539	34.008	33.96	34.056	-0.0012474	1062	46	0.9827221	0.027433634	0.98120266	397.54224	0	11.097809						125	5	3	NaN	NaN	NaN	0.03394	1	18979	18979		54.277	33.764	1	11137			12420	5484	7204	7350	9811	9811					0.052593854342148916
KYAALFSQM	9	Unmodified	_KYAALFSQM_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7706025876	2	529.770603	1057.52665	2.1444	0.001136	-4.1126	-0.0021787	-1.9682	-0.0010427	529.7688381856035	23.055	0.12032	23.055	23.007	23.128	0	1278	73	0.85049206	0.04425305	0.85049206	345.0939	0	17.956055						295	6	4	NaN	NaN	NaN	0.2345	1	10983	10983		23.118	14.827	1	49151			12421	457	7205	7351	9812	9812					0.0001899819685604598
KYAALFSQM	9	Unmodified	_KYAALFSQM_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7706025876	2	529.770603	1057.52665	1.2534	0.00066399	-3.0566	-0.0016193	-1.8033	-0.00095532	529.7686502642559	23.103	0.16864	23.09	22.993	23.162	-0.013294	1278	64	0.85049206	0.038731933	0.8489726	345.09387	0	15.71579						250	8	3	NaN	NaN	NaN	0.16939	1	10759	10759		27.296	3.9618	1	45595			12422	457	7205	7351	9813	9813					0.0001899819685604598
KYAALFSQM	9	Oxidation (M)	_KYAALFSQM(Oxidation (M))_		KYAALFSQM(1)		KYAALFSQM(48)	0	0	1		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.76805989865	2	537.76806	1073.52157	1.9711	0.00106	-1.8696	-0.0010054	0.10147	5.4569E-05	537.7677837706225	19.516	0.23999	19.516	19.444	19.684	0	1257	79	0.86339295	0.047878683	0.86339295	350.2614	0	19.423431						336	11	3	NaN	NaN	NaN	0.04743	1	11707	11707		48.002	30.203	1	48980			12423	457	7205	7352	9814	9814		40			-0.01225305665752785
KYAALFSQM	9	Oxidation (M)						0	0	1		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.76806	1073.52157	1.2926	0.00069514	-1.9171	-0.0010309	-0.62443	-0.0003358	537.7674494333925	19.539	0.21667	19.524	19.428	19.645	-0.014143	1260	76	0.8615505	0.0460397	0.8600311	349.51398		18.677368	0.0041873	-2.5627E-05	-0.0016809	NaN	48.002	254	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41798			12424	457	7205	7352				40			-0.01225305665752785
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.2192830567667	3	406.219283	1215.63602	1.9296	0.00078386	-1.687	-0.00068531	0.2426	9.8549E-05	406.21889638161116	13.733	0.14418	13.733	13.685	13.829	0	1431	37	0.75620437	0.022246659	0.75620437	459.47925	0	13.517395						109	7	2	NaN	NaN	NaN	0.2055	1	16880	16880		35.056	16.498	1	23719			12425	1925	7206	7353	9815	9815					0.03682720140568563
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.2192830567667	3	406.219283	1215.63602	1.2082	0.0004908	-1.4658	-0.00059543	-0.25755	-0.00010462	406.21871455040423	13.973	0.26377	13.962	13.842	14.106	-0.010672	1431	31	0.75620437	0.018538952	0.7546849	459.47925	0	11.264465						179	12	3	NaN	NaN	NaN	0.034303	1	16211	16211		57.782	6.696	1	20697			12426	1925	7206	7353	9816	9816					0.03682720140568563
KYAELKDRL	9	Unmodified	_KYAELKDRL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.22051252156666	3	379.220513	1134.63971	1.8029	0.00068368	-1.8666	-0.00070784	-0.063689	-2.4152E-05	379.2196742786908	14.261	0.24016	14.261	14.189	14.429	0	1431	49	0.75620437	0.029662251	0.75620437	459.84665	0	18.037567						358	11	4	NaN	NaN	NaN	0.040769	1	14277	14277		52.195	7.5613	1	114210			12427	5661	7207	7354	9817	9817					0.07777389914417654
KYAELKDRL	9	Unmodified	_KYAELKDRL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.32713054905	2	568.327131	1134.63971	1.8115	0.0010295	-1.5757	-0.0008955	0.23579	0.000134	568.326260057459	14.237	0.12015	14.237	14.213	14.333	0	1191	52	0.90387505	0.031249523	0.90387505	366.43384	0	12.668671						145	6	3	NaN	NaN	NaN	0.21451	1	14278	14278		24.4	8.9376	1	16883			12428	5661	7207	7354	9818	9818					0.07777389914417654
KYAELKDRL	9	Unmodified	_KYAELKDRL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.22051252156666	3	379.220513	1134.63971	1.4437	0.00054747	-2.4264	-0.00092016	-0.98278	-0.00037269	379.2195725879256	14.596	0.33536	14.585	14.369	14.704	-0.011219	1431	58	0.75620437	0.035233438	0.7546849	459.84665	0	21.425415						291	15	2	NaN	NaN	NaN	0.030545	1	13812	13812		45.55	10.027	1	96845			12429	5661	7207	7354	9819	9819					0.07777389914417654
KYAELKDRL	9	Unmodified	_KYAELKDRL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.32713054905	2	568.327131	1134.63971	1.0705	0.00060842	-1.8614	-0.0010579	-0.79088	-0.00044948	568.326283947342	14.62	0.26357	14.609	14.489	14.752	-0.011218	1191	40	0.90387505	0.023891509	0.9023556	366.43384	0	9.68573						158	12	2	NaN	NaN	NaN	0.061945	1	13813	13813		41.839	20.067	1	12001			12430	5661	7207	7354	9820	9820					0.07777389914417654
KYAHMINGF	9	Unmodified	_KYAHMINGF_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.76839424965	2	540.768394	1079.52224	2.0309	0.0010983	-1.4902	-0.00080587	0.54072	0.0002924	540.7677186986607	17.573	0.21573	17.573	17.525	17.741	0	1242	70	0.87260187	0.04235196	0.87260187	353.97235	0	17.180115						293	10	3	NaN	NaN	NaN	0.01047	1	11953	11953		91.429	61.83	1	42874			12431	507	7208	7355	9821	9821					-0.014344662260555197
KYAHMINGF	9	Unmodified	_KYAHMINGF_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.76839424965	2	540.768394	1079.52224	1.798	0.00097231	-0.72725	-0.00039327	1.0708	0.00057904	540.768451073565	17.81	0.23974	17.796	17.652	17.892	-0.013784	1239	70	0.87444305	0.04235655	0.8729236	354.71924	0	17.181976						265	11	2	NaN	NaN	NaN	0.04947	1	11649	11649		47.136	24.018	1	47495			12432	507	7208	7355	9822	9822					-0.014344662260555197
KYALELLTI	9	Unmodified	_KYALELLTI_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.3235252276	2	532.323525	1062.6325	0.73298	0.00039018	-1.9968	-0.001063	-1.2638	-0.00067277	532.322647826034	29.304	0.096523	29.296	29.272	29.368	-0.0077229	1230	52	0.8799654	0.03129351	0.878446	357.03088	0	12.696777						111	5	3	NaN	NaN	NaN	0.14787	1	11000	11000		28.896	7.1245	1	9869			12433	1802	7209	7356	9823	9823					0.10368657313983931
KYALELLTI	9	Unmodified						0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.323525	1062.6325	1.5319	0.00081547	-3.0801	-0.0016396	-1.5482	-0.00082413	532.3214868178892	29.305	0.12063	29.305	29.256	29.377	0	1230	46	0.8799654	0.027608931	0.8799654	357.03088		11.201813	0.0042443	-0.0007036	0.00075972	NaN	28.896	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12992			12434	1802	7209	7356							0.10368657313983931
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.82897474625	2	545.828975	1089.6434	1.3298	0.00072584	-1.5342	-0.00083739	-0.20438	-0.00011156	545.8285101456105	27.711	0.21721	27.702	27.653	27.87	-0.009552	1215	58	0.8891654	0.034952402	0.88764596	360.64917	0	14.176819						397	10	5	NaN	NaN	NaN	0.030261	1	12089	12089		75.698	6.4657	1	143110			12435	5603	7210	7357	9824	9824					0.10216059688264068
KYAMMFAEL	9	Unmodified	_KYAMMFAEL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.26683847815	2	552.266838	1102.51912	1.3036	0.00071995	-2.031	-0.0011217	-0.72741	-0.00040172	552.2660581773042	26.867	0.26542	26.867	26.795	27.06	0	1230	106	0.8799654	0.06442076	0.8799654	356.86557	0	26.125519						732	12	6	NaN	NaN	NaN	0.089764	1	12935	12935		37.302	8.4068	1	176330			12436	995	7211	7358	9825	9825					-0.028034773950594172
KYAPSGFYI	9	Unmodified	_KYAPSGFYI_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.27129269185	2	523.271293	1044.52803	1.771	0.0009267	-1.6518	-0.00086435	0.11915	6.235E-05	523.2708557658154	22.863	0.14471	22.863	22.79	22.935	0	1278	91	0.85049206	0.055298448	0.85049206	345.14908	0	22.441376						274	7	3	NaN	NaN	NaN	0.46215	1	10400	10400		11.17	0.56537	1	35347			12437	774	7212	7359	9826	9826					0.007549555572722966
KYAQWEESL	9	Unmodified	_KYAQWEESL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.27984600545	2	577.279846	1152.54514	1.4698	0.00084849	-2.9016	-0.001675	-1.4318	-0.00082653	577.2779971522833	20.718	0.096432	20.718	20.646	20.742	0	1209	61	0.892844	0.036778092	0.892844	361.89432	0	14.907135						122	5	2	NaN	NaN	NaN	0.27608	1	14885	14885		20.449	4.6267	1	37332			12438	1316	7213	7360	9827	9827					-0.025031686275724496
KYCAAAEYAYQ	11	Unmodified	_KYCAAAEYAYQ_					0	0	0		ENST00000305963.2_1_X:135044472-135044568:-|nuORF	ENST00000305963.2_1_X:135044472-135044568:-|nuORF	ENST00000305963.2_1_X:135044472-135044568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.78443824435	2	640.784438	1279.55432	1.8752	0.0012016	-7.568	-0.0048495	-5.6928	-0.0036478	640.7798323994621	15.942	0.071913	15.942	15.918	15.99	0	1155	46	0.92591566	0.027528465	0.92591566	374.8584	0	11.1449585						93	4	2	NaN	NaN	NaN	0.58731	1	18405	18405		14.854	0.42897	1	12811			12439	6424	7214	7361	9828	9828					-0.07427143333552522
KYDAAHFLI	9	Unmodified	_KYDAAHFLI_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2900167612501	2	539.290017	1076.56548	1.011	0.00054522	0.68537	0.00036961	1.6964	0.00091483	539.2909803590001	22.187	0.21706	22.173	22.101	22.318	-0.013731	1251	67	0.8670771	0.04050398	0.8655577	351.74338	0	16.43106						245	10	3	NaN	NaN	NaN	0.2961	1	11524	11524		19.164	4.7386	1	29780			12440	2371	7215	7362	9829	9829					0.030260468229016624
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7978715831001	2	602.797872	1203.58119	2.4724	0.0014903	-0.78033	-0.00047038	1.692	0.0010199	602.7969939552075	26.312	0.50683	26.312	26.167	26.674	0	1158	127	0.92408	0.07715064	0.92408	374.36728	0	31.255585						1638	22	8	NaN	NaN	NaN	0.013093	1	16578	16578		83.529	33.213	1	1546600			12441	472	7216	7363	9830	9830					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.7978715831001	2	602.797872	1203.58119	2.1761	0.0013118	-0.46536	-0.00028052	1.7108	0.0010313	602.7972597700011	26.336	0.62734	26.324	26.156	26.783	-0.011137	1158	145	0.92408	0.088181674	0.9225606	374.36728	0	35.72455						1792	27	7	NaN	NaN	NaN	0.024221	1	15926	15926		66.656	31.36	1	1520000			12442	472	7216	7363	9831	9831					-0.012457114507014921
KYDEVTDQMN	10	Unmodified	_KYDEVTDQMN_					0	0	0			REV__CON__P50446	REV__CON__P50446	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.8484155858	3	414.848416	1241.52342	1.8989	0.00078777	0.6442	0.00026724	2.5431	0.001055	414.84791885981065	26.312	0.096544	26.312	26.288	26.384	0	1473	31	0.7302302	0.018567085	0.7302302	443.5933	0	11.278961						98	5	3	NaN	NaN	NaN	0.72792	1	17558	17558		6.1406	0	1	8302.6	+	+	12443	8268	7217	7364	9832	9832					-0.08768341438440075
KYDEVTDQMN	10	Unmodified	_KYDEVTDQMN_					0	0	0			REV__CON__P50446	REV__CON__P50446	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.8484155858	3	414.848416	1241.52342	1.4837	0.00061552	3.7166	0.0015418	5.2003	0.0021573	414.8499532542879	26.336	0.12064	26.324	26.276	26.397	-0.011137	1470	37	0.7320868	0.02227813	0.73056734	444.7211	0	13.533264						105	6	3	NaN	NaN	NaN	0.65893	1	16811	16811		10.861	3.731	1	9460.2	+	+	12444	8268	7217	7364	9833	9833					-0.08768341438440075
KYDEVTDQMN	10	Unmodified						0	0	0			REV__CON__P50446	REV__CON__P50446	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	414.848416	1241.52342	1.8989	0.00078777	0.6442	0.00026724	2.5431	0.001055	414.84791885981065	26.312	0.096544	26.312	26.288	26.384	0	1473	31	0.7302302	0.018567085	0.7302302	443.5933		11.278961	-0.0063612	-0.0020766	-0.00016859	NaN	10.861	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8302.6	+	+	12445	8268	7217	7364							-0.08768341438440075
KYDEVTDQMN	10	Unmodified						0	0	0			REV__CON__P50446	REV__CON__P50446	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	414.848416	1241.52342	1.4837	0.00061552	3.7166	0.0015418	5.2003	0.0021573	414.8499532542879	26.336	0.12064	26.324	26.276	26.397	-0.011137	1470	37	0.7320868	0.02227813	0.73056734	444.7211		13.533264	0.0063612	0.0017472	0.00016859	NaN	10.861	105	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9460.2	+	+	12446	8268	7217	7364							-0.08768341438440075
KYDKEKFY	8	Unmodified	_KYDKEKFY_					0	0	0			REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7873068968	2	560.787307	1119.56006	1.4546	0.0008157	6.9163	0.0038786	8.3709	0.0046943	560.7927036875132	28.025	0.096529	28.016	27.992	28.088	-0.0089779	1257	52	0.86339295	0.031303644	0.8618735	350.07883	0	12.692627						74	5	2	NaN	NaN	NaN	0.81756	1	13254	13254		6.8632	1.1691	1	5177.5	+		12447	11352	7218	7365	9834	9834					0.005063232404154405
KYDKQNMI	8	Unmodified	_KYDKQNMI_					0	0	0		tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	tr|U7SGE6|U7SGE6_FUSNULysine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lysSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5240923038	1	1039.52409	1038.51682	1.9547	0.002032	-0.60398	-0.00062786	1.3507	0.0014041	1039.523307276572	30.029	0.26548	30.029	29.884	30.149	0	147	100	1.5316714	0.05847478	1.5316714	310.82095	0	11.866241						418	12	2	NaN	NaN	NaN	0.6053	1	10137	10137		24.961	1.1106	1	58945			12448	13729	7219	7366	9835	9835					-0.0009018980849759828
KYDNLVIEF	9	Unmodified	_KYDNLVIEF_					0	0	0			REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.80041427205	2	570.800414	1139.58628	1.7617	0.0010056	-3.4979	-0.0019966	-1.7363	-0.00099105	571.3002531422057	18.05	0.31195	18.036	17.964	18.276	-0.013786	1203	55	0.8965218	0.0331074	0.89500237	363.4339	0	13.421173						294	14	4	NaN	NaN	NaN	0.2345	1	13964	13964		23.118	2.6689	1	46955	+		12449	9066	7220	7367	9836	9836					0.022065924119033298
KYDNLVIEF	9	Unmodified						0	0	0			REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.800414	1139.58628	2.1947	0.0012527	-4.5383	-0.0025905	-2.3437	-0.0013378	570.7988154878918	17.957	0.2159	17.957	17.933	18.149	0	1209	58	0.892844	0.034948587	0.892844	361.943		14.1675415	-0.039552	-0.0009803	-0.0010792	NaN	23.118	167	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33314	+		12450	9066	7220	7367							0.022065924119033298
KYDNLVIEF	9	Unmodified						0	0	0			REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	REV__ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.800414	1139.58628	1.7617	0.0010056	-3.4979	-0.0019966	-1.7363	-0.00099105	571.3002531422057	18.05	0.31195	18.036	17.964	18.276	-0.013786	1203	55	0.8965218	0.0331074	0.89500237	363.4339		13.421173	0.039552	0.00020745	0.0010792	NaN	23.118	294	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46955	+		12451	9066	7220	7367							0.022065924119033298
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.77693917575	2	549.776939	1097.53933	1.502	0.00082579	-1.6369	-0.00089993	-0.13485	-7.4137E-05	550.2761347321394	19.948	0.12029	19.948	19.9	20.021	0	1227	88	0.88180584	0.053417623	0.88180584	357.63196	0	21.66446						199	6	3	NaN	NaN	NaN	0.077759	1	12741	12741		39.039	4.5851	1	17708			12452	3159	7221	7368	9837	9837					-0.005542671392504417
KYDPNVYSI	9	Unmodified						0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.776939	1097.53933	1.4436	0.00079365	-0.38006	-0.00020895	1.0635	0.0005847	549.7761056516756	19.972	0.2407	19.958	19.885	20.126	-0.014141	1230	103	0.8799654	0.062610626	0.878446	356.88553		25.392853	0.0046227	0.00054007	-0.0016799	NaN	39.039	305	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32037			12453	3159	7221	7368							-0.005542671392504417
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2924220644501	2	589.292422	1176.57029	1.7371	0.0010237	-2.9468	-0.0017365	-1.2097	-0.00071289	589.2902544650846	27.446	0.24142	27.446	27.35	27.591	0	1176	121	0.9130621	0.07353234	0.9130621	369.9999	0	29.797485						656	11	4	NaN	NaN	NaN	0.084037	1	15698	15698		38.131	20.161	1	183540			12454	2044	7222	7369	9838	9838					-0.01093113825004366
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1;ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2924220644501	2	589.292422	1176.57029	1.1979	0.00070592	-2.7328	-0.0016104	-1.5349	-0.0009045	589.2901439422652	27.47	0.36197	27.46	27.388	27.75	-0.0095501	1173	115	0.91489893	0.06984818	0.9133795	370.74423	0	28.304565						800	16	4	NaN	NaN	NaN	0.054111	1	15128	15128		45.165	12.712	1	183830			12455	2044	7222	7369	9839	9839					-0.01093113825004366
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.31041785235	2	558.310418	1114.60628	1.3432	0.00074994	-4.5397	-0.0025345	-3.1964	-0.0017846	558.3081382294195	34.686	0.09647	34.686	34.638	34.734	0	1215	40	0.8891654	0.023914814	0.8891654	360.5483	0	9.697235						77	5	2	NaN	NaN	NaN	0.31471	1	13472	13472		17.97	5.921	1	11612			12456	7828	7223	7370	9840	9840					0.05356388142513424
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.31041785235	2	558.310418	1114.60628	1.1912	0.00066508	-2.2479	-0.001255	-1.0567	-0.00058997	558.308723314771	33.914	0.36193	33.914	33.842	34.203	0	1218	73	0.8873258	0.0441671	0.8873258	359.80234	0	17.909332						664	16	5	NaN	NaN	NaN	0.030696	1	13473	13473		58.2	24.774	1	372470			12457	7828	7223	7370	9841	9841					0.05356388142513424
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.31041785235	2	558.310418	1114.60628	1.3976	0.00078028	-1.5238	-0.00085074	-0.1262	-7.0459E-05	558.3094013673004	33.985	0.26548	33.984	33.887	34.153	-0.0012474	1215	73	0.8891654	0.044157505	0.88764596	360.54828	0	17.905487						539	12	4	NaN	NaN	NaN	0.084037	1	13084	13084		38.131	12.33	1	351240			12458	7828	7223	7370	9842	9842					0.05356388142513424
KYDVLFALF	9	Unmodified						0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.310418	1114.60628	1.906	0.0010641	-8.8966	-0.0049671	-6.9907	-0.003903	558.8080224457449	34.95	0.072357	34.95	34.926	34.998	-4.5776E-05	1215	46	0.8891654	0.02758503	0.88764596	360.5483		11.185486	0.13183	-0.0036025	-0.00075972	NaN	17.97	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3209.5			12459	7828	7223	7370							0.05356388142513424
KYEAIQLTF	9	Unmodified	_KYEAIQLTF_					0	0	0		ENST00000424783.1_1_2:99718519-99719212:+|nuORF;ENSG00000108055|ENST00000361804|SMC3	ENST00000424783.1_1_2:99718519-99719212:+|nuORF	ENST00000424783.1_1_2:99718519-99719212:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.802956961	2	556.802957	1111.59136	1.6491	0.00091824	-2.5854	-0.0014395	-0.93624	-0.0005213	556.8018685328299	25.226	0.16887	25.214	25.189	25.358	-0.012011	1221	52	0.885486	0.03128332	0.88396657	359.06824	0	12.685516						177	8	3	NaN	NaN	NaN	0.12104	1	12970	12970		32.778	6.9771	1	30058			12460	1666	7224	7371	9843	9843					0.04002896274505474
KYEDFVASLLL	11	Unmodified	_KYEDFVASLLL_					0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3555536375001	2	649.355554	1296.69655	1.1872	0.00077092	-5.7169	-0.0037123	-4.5297	-0.0029414	649.3523047653388	41.305	0.43319	41.305	41.185	41.618	0	1206	67	0.894683	0.040447116	0.894683	362.16266	0	16.372772						723	19	5	NaN	NaN	NaN	0.73455	1	18721	18721		5.1889	0.45981	1	106890	+		12461	12323	7225	7372	9844	9844					0.060073926802715505
KYEDFVASLLL	11	Unmodified						0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	649.355554	1296.69655	1.1872	0.00077092	-5.7169	-0.0037123	-4.5297	-0.0029414	649.3523047653388	41.305	0.43319	41.305	41.185	41.618	0	1206	67	0.894683	0.040447116	0.894683	362.16266		16.372772	0.0086693	-0.00040155	-0.00015968	NaN	5.1889	723	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106890	+		12462	12323	7225	7372							0.060073926802715505
KYEDFVASLLL	11	Unmodified						0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.355554	1296.69655	0.97466	0.0006329	-5.0436	-0.0032751	-4.069	-0.0026422	649.3531307645621	41.28	0.4332	41.288	41.192	41.625	0.0082588	1203	64	0.8965218	0.038606524	0.89500237	362.907		15.627716	-0.0086693	0.00047285	0.00015968	NaN	5.1889	811	19	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128650	+		12463	12323	7225	7372							0.060073926802715505
KYEEKEVP	8	Unmodified	_KYEEKEVP_					0	0	0			REV__tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	REV__tr|U7SZM9|U7SZM9_FUSNUPhagehead-tailadapterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00803PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.263664625	2	511.263665	1020.51278	2.7666	0.0014144	0.73354	0.00037503	3.5001	0.0017895	511.26375961260896	16.419	0.11991	16.406	16.334	16.454	-0.012995	1302	28	0.8357362	0.016608357	0.8342168	339.26462	0	6.7421265						43	6	2	NaN	NaN	NaN	0.78546	1	9199	9199		11.17	0	1	2252.4	+		12464	13561	7226	7373	9845	9845					0.003340439694284214
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.28968241025	2	572.289682	1142.56481	2.3848	0.0013648	0.13107	7.5013E-05	2.5159	0.0014398	572.2895935766485	27.905	0.43436	27.905	27.688	28.122	0	1194	112	0.902037	0.06803584	0.902037	365.65826	0	27.57962						1062	19	5	NaN	NaN	NaN	0.017076	1	14548	14548		75.698	33.381	1	1057300			12465	1536	7227	7374	9846	9846					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.28968241025	2	572.289682	1142.56481	1.6983	0.00097192	0.90908	0.00052026	2.6074	0.0014922	572.2901588914696	27.904	0.43441	27.895	27.726	28.16	-0.009552	1191	112	0.90387505	0.068050504	0.9023556	366.40332	0	27.585571						1430	19	5	NaN	NaN	NaN	0.030696	1	14068	14068		58.2	18.741	1	1196300			12466	1536	7227	7374	9847	9847					-0.0007679261682369543
KYEKIFEML	9	Unmodified	_KYEKIFEML_					0	0	0		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10;ENSG00000278289|ENST00000620654|CT45A6;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;chrX:135781735-135785220|138|181.26|0.31|9.17|-|ENST00000487941|CT45A5,CT45A5;chrX:135779641-135781561|127|57.16|0.53|6.75|-|ENST00000617203|CT45A5,CT45A5	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8202924344	2	600.820292	1199.62603	1.0128	0.00060851	-2.8042	-0.0016848	-1.7914	-0.0010763	600.8196143970233	24.478	0.19291	24.478	24.406	24.598	0	1137	58	0.9369253	0.034865677	0.9369253	379.58542	0	14.125488						222	9	4	NaN	NaN	NaN	0.27507	1	16469	16469		20.513	5.0506	1	22290			12467	161	7228	7375	9848	9848					0.03420396090950817
KYEKIFEML	9	Unmodified						0	0	0		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10;ENSG00000278289|ENST00000620654|CT45A6;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;chrX:135781735-135785220|138|181.26|0.31|9.17|-|ENST00000487941|CT45A5,CT45A5;chrX:135779641-135781561|127|57.16|0.53|6.75|-|ENST00000617203|CT45A5,CT45A5	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	600.820292	1199.62603	0.8587	0.00051593	-2.7778	-0.001669	-1.9191	-0.001153	600.818937734409	24.647	0.26536	24.634	24.562	24.827	-0.012394	1140	58	0.93509084	0.034861922	0.9335714	378.8422		14.123932	0.078152	1.1916E-05	-0.0016769	NaN	20.513	172	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17129			12468	161	7228	7375							0.03420396090950817
KYEKIFEML	9	Oxidation (M)	_KYEKIFEM(Oxidation (M))L_		KYEKIFEM(1)L		KYEKIFEM(45)L	0	0	1		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10;ENSG00000278289|ENST00000620654|CT45A6;ENSG00000278085|ENST00000611660|CT45A8;ENSG00000273696|ENST00000610598|CT45A7;ENSG00000271449|ENST00000612907|CT45A2;ENSG00000270946|ENST00000620704|CT45A9;ENSG00000269096|ENST00000598716|CT45A3;ENSG00000268940|ENST00000594565|CT45A1;ENSG00000228836|ENST00000698999|CT45A5;chrX:135781735-135785220|138|181.26|0.31|9.17|-|ENST00000487941|CT45A5,CT45A5;chrX:135779641-135781561|127|57.16|0.53|6.75|-|ENST00000617203|CT45A5,CT45A5	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.81774974545	2	608.81775	1215.62095	1.0045	0.00061154	-1.7273	-0.0010516	-0.72287	-0.0004401	608.8172162259582	21.007	0.14433	21.007	20.935	21.079	0	1158	58	0.92408	0.034884453	0.92408	374.32526	0	14.130951						216	7	3	NaN	NaN	NaN	0.055363	1	16877	16877		44.633	21.516	1	33092			12469	161	7228	7376	9849	9849		10			0.02176092228341986
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2823886944001	2	593.282389	1184.55022	2.0657	0.0012255	-0.61534	-0.00036507	1.4504	0.00086047	593.2821309463772	23.417	0.28934	23.417	23.296	23.586	0	1170	103	0.91673553	0.062461972	0.91673553	371.45947	0	25.309479						791	13	5	NaN	NaN	NaN	5.1574E-18	1	15993	15993		159.67	115.03	1	359860			12470	3086	7229	7377	9850	9850					-0.034668647649596096
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.2823886944001	2	593.282389	1184.55022	1.9792	0.0011742	0.66112	0.00039223	2.6403	0.0015665	593.282616075236	23.465	0.31365	23.451	23.331	23.644	-0.013294	1170	109	0.91673553	0.066121936	0.9152161	371.45947	0	26.79248						825	14	5	NaN	NaN	NaN	8.6802E-12	1	15385	15385		145.7	90.292	1	356780			12471	3086	7229	7377	9851	9851					-0.034668647649596096
KYESIRLLF	9	Unmodified	_KYESIRLLF_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.83987378355	2	584.839874	1167.66519	1.6184	0.00094652	-6.9789	-0.0040815	-5.3604	-0.003135	584.8354757939611	24.55	0.16877	24.55	24.526	24.695	0	1161	46	0.9222442	0.027540386	0.9222442	373.7538	0	11.161163						121	8	2	NaN	NaN	NaN	0.27507	1	15412	15412		20.513	2.2798	1	16031			12472	2930	7230	7378	9852	9852					0.08806864436837714
KYESIRLLF	9	Unmodified						0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.839874	1167.66519	1.336	0.00078134	-2.1114	-0.0012348	-0.77541	-0.00045349	584.838186763355	24.695	0.19294	24.682	24.61	24.803	-0.012392	1161	40	0.9222442	0.023870885	0.92072475	373.7538		9.674072	0.066083	0.0016729	-0.00075972	NaN	20.513	118	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11588			12473	2930	7230	7378							0.08806864436837714
KYFALPHKI	9	Unmodified	_KYFALPHKI_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.8903266796666	3	372.890327	1115.64915	1.9364	0.00072208	-1.8764	-0.00069969	0.060048	2.2391E-05	372.8898204215949	17.597	0.2397	17.597	17.501	17.741	0	1494	43	0.7172283	0.026013732	0.7172283	436.2343	0	15.822113						221	11	3	NaN	NaN	NaN	0.13196	1	13514	13514		31.198	25.748	1	33728			12474	943	7231	7379	9853	9853					0.09595202990590224
KYFALPHKI	9	Unmodified	_KYFALPHKI_					0	0	0		nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-4|TUT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.8903266796666	3	372.890327	1115.64915	2.2549	0.00084084	-2.5274	-0.00094243	-0.27246	-0.0001016	372.8893465491579	18.242	0.16792	18.228	18.108	18.276	-0.01395	1491	37	0.7190863	0.022295058	0.71756685	437.36438	0	13.560333						112	8	2	NaN	NaN	NaN	0.37272	1	13125	13125		14.854	6.5765	1	13350			12475	943	7231	7379	9854	9854					0.09595202990590224
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.3238595786	2	541.32386	1080.63317	1.5032	0.00081374	-1.5881	-0.0008597	-0.08491	-4.5964E-05	541.3230231946956	20.501	0.21656	20.501	20.453	20.67	0	1227	64	0.88180584	0.03863573	0.88180584	357.70132	0	15.672455						252	10	4	NaN	NaN	NaN	0.017076	1	12031	12031		75.698	37.568	1	73833			12476	1472	7232	7380	9855	9855					0.09607496753687883
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.3238595786	2	541.32386	1080.63317	1.1345	0.00061413	-1.1452	-0.00061995	-0.01074	-5.8138E-06	541.3235482695852	20.694	0.31322	20.68	20.584	20.897	-0.014088	1221	64	0.885486	0.03865248	0.88396657	359.19418	0	15.67923						336	14	3	NaN	NaN	NaN	0.017076	1	11711	11711		75.698	22.558	1	67432			12477	1472	7232	7380	9856	9856					0.09607496753687883
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.26419594125	2	551.264196	1100.51384	1.7915	0.00098758	1.7009	0.00093767	3.4924	0.0019252	551.7672179876727	17.837	0.19185	17.837	17.765	17.957	0	1245	70	0.87076044	0.04237485	0.87076044	353.14047	0	17.185272						195	9	3	NaN	NaN	NaN	0.16939	1	12858	12858		27.296	4.1786	1	40608			12478	7900	7233	7381	9857	9857					-0.03239741661673179
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.26419594125	2	551.264196	1100.51384	1.8969	0.0010457	1.8376	0.001013	3.7346	0.0020587	551.2664014679327	17.882	0.14392	17.868	17.82	17.964	-0.013786	1245	79	0.87076044	0.047899425	0.869241	353.14047	0	19.425812						236	7	3	NaN	NaN	NaN	0.059222	1	12524	12524		42.995	9.5695	1	56514			12479	7900	7233	7381	9858	9858					-0.03239741661673179
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3215138549001	2	616.321514	1230.62847	1.2928	0.00079679	-2.101	-0.0012949	-0.80816	-0.00049809	616.3204150221111	20.285	0.21631	20.285	20.237	20.453	0	1167	67	0.91857195	0.040399075	0.91857195	372.04312	0	16.36258						376	10	5	NaN	NaN	NaN	0.0047937	1	17273	17273		114.98	59.571	1	163730			12480	3606	7234	7382	9859	9859					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3215138549001	2	616.321514	1230.62847	1.1308	0.00069693	-2.3636	-0.0014567	-1.2328	-0.00075978	616.3202749063981	20.429	0.26484	20.415	20.319	20.584	-0.014141	1167	58	0.91857195	0.034888268	0.9170525	372.04312	0	14.130585						424	12	3	NaN	NaN	NaN	0.040167	1	16561	16561		56.466	24.79	1	172060			12481	3606	7234	7382	9860	9860					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.2167680588	3	411.216768	1230.62847	1.2615	0.00051877	-1.4477	-0.00059532	-0.18616	-7.6554E-05	411.21623986646625	20.429	0.28898	20.415	20.343	20.632	-0.014141	1524	52	0.698637	0.03162068	0.69711757	424.44263	0	19.21051						357	13	4	NaN	NaN	NaN	0.10945	1	16562	16562		34.454	4.7478	1	89959			12482	3606	7234	7382	9861	9861					0.02238567820290882
KYFEKQFEL	9	Unmodified						0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	411.216768	1230.62847	1.5087	0.00062039	-3.0147	-0.0012397	-1.506	-0.00061929	411.2154795152012	20.285	0.16825	20.285	20.237	20.405	0	1524	70	0.698637	0.042771637	0.698637	424.44263		25.985016	-0.065106	-0.0010824	0.00075972	NaN	34.454	280	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87419			12483	3606	7234	7382							0.02238567820290882
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.592823796	1	1081.59282	1080.58555	1.8999	0.0020549	-1.6854	-0.0018229	0.21453	0.00023204	1081.5898565661262	26.36	0.024147	26.36	26.336	26.36	0	84	49	1.5688156	0.028271914	1.5688156	318.19608	0	5.7342834						53	2	2	NaN	NaN	NaN	0.48181	1	12023	12023		10.36	2.0699	1	3006.1			12484	2735	7235	7383	9862	9862					0.04847797762840855
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.3000501313	2	541.30005	1080.58555	2.2478	0.0012167	-0.18044	-9.7671E-05	2.0673	0.0011191	541.299972855445	26.36	0.24135	26.36	26.239	26.481	0	1206	97	0.894683	0.058902204	0.894683	362.9251	0	23.893463						537	11	5	NaN	NaN	NaN	0.032689	1	12024	12024		55.592	6.9414	1	166650			12485	2735	7235	7383	9863	9863					0.04847797762840855
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.3000501313	2	541.30005	1080.58555	1.8008	0.00097478	0.60645	0.00032827	2.4073	0.001303	541.3004092459336	26.384	0.24128	26.373	26.252	26.493	-0.011137	1206	100	0.894683	0.060739636	0.89316356	362.92508	0	24.638824						544	11	5	NaN	NaN	NaN	0.028569	1	11706	11706		60.984	27.558	1	170250			12486	2735	7235	7383	9864	9864					0.04847797762840855
KYFEVPSVL	9	Unmodified						0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1081.59282	1080.58555	2.7834	0.0030105	-0.77963	-0.00084325	2.0037	0.0021672	1081.59041060445	26.36	0.048256	26.349	26.324	26.373	-0.011135	90	40	1.5652816	0.02297461	1.5637622	317.4793		4.6598206	-0.0057116	0.00050772	-0.0025267	NaN	10.36	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2680.1			12487	2735	7235	7383							0.04847797762840855
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8420821215001	2	597.842082	1193.66961	1.4245	0.00085163	-0.91839	-0.00054905	0.50611	0.00030257	597.8416324446996	29.305	0.21715	29.305	29.256	29.474	0	1140	82	0.93509084	0.049545944	0.93509084	378.8637	0	20.074188						514	10	5	NaN	NaN	NaN	0.02603	1	16273	16273		61.199	25.902	1	228970			12488	2735	7236	7384	9865	9865					0.08052328859753288
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8420821215001	2	597.842082	1193.66961	1.1034	0.00065968	-1.779	-0.0010635	-0.67553	-0.00040386	597.8410849790478	29.328	0.21718	29.32	29.272	29.489	-0.0077209	1140	73	0.93509084	0.044033706	0.9335714	378.8637	0	17.84082						504	10	4	NaN	NaN	NaN	0.1802	1	15645	15645		37.231	3.8055	1	228590			12489	2735	7236	7384	9866	9866					0.08052328859753288
KYFGEKIGLYF	11	Unmodified	_KYFGEKIGLYF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.86608853405	2	682.866089	1363.71762	1.7722	0.0012102	-2.6658	-0.0018204	-0.89362	-0.00061022	682.8635014563589	25.105	0.12063	25.105	25.057	25.178	0	1044	43	0.99369496	0.025595129	0.99369496	402.0337	0	10.355408						143	6	4	NaN	NaN	NaN	0.16517	1	19731	19731		33.567	14.404	1	13558			12490	2716;551	7237	7385	9867	9867					0.05031402779786731
KYFGEKIGLYF	11	Unmodified	_KYFGEKIGLYF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.5798178449	3	455.579818	1363.71762	1.1095	0.00050547	-1.0866	-0.00049504	0.022894	1.043E-05	455.57973840925575	25.105	0.12062	25.105	25.081	25.202	0	1470	46	0.7320868	0.027843118	0.7320868	444.2833	0	16.897217						125	6	3	NaN	NaN	NaN	0.53563	1	19732	19732		9.6366	4.7359	1	13557			12491	2716;551	7237	7385	9868	9868					0.05031402779786731
KYFGEKIGLYF	11	Unmodified	_KYFGEKIGLYF_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000131620|Q5XXA6-3|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000047617|ENST00000682330|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.86608853405	2	682.866089	1363.71762	1.9956	0.0013627	-4.5535	-0.0031094	-2.5578	-0.0017467	683.3643729477925	25.394	0.19301	25.382	25.31	25.503	-0.012011	1044	40	0.99369496	0.023765624	0.9921755	402.0337	0	9.615204						138	9	3	NaN	NaN	NaN	0.6011	1	18814	18814		13.949	1.3791	1	10806			12492	2716;551	7237	7385	9869	9869					0.05031402779786731
KYFGGVLEYF	10	Unmodified	_KYFGGVLEYF_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.8107819931	2	611.810782	1221.60701	0.63546	0.00038878	-0.066608	-4.0752E-05	0.56885	0.00034803	612.3120138814945	29.304	0.24129	29.296	29.248	29.489	-0.0077229	1146	79	0.93142134	0.04773408	0.9299019	377.27832	0	19.335022						303	11	3	NaN	NaN	NaN	0.50283	1	16332	16332		19.336	3.8738	1	40997			12493	4309	7238	7386	9870	9870					0.005071827915571703
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-6|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.29817614435	2	555.298176	1108.5818	1.4262	0.00079195	-4.7007	-0.0026103	-3.2746	-0.0018184	555.796344619715	15.51	0.33627	15.51	15.39	15.726	0	1242	88	0.87260187	0.053388774	0.87260187	353.85544	0	21.650085						453	15	2	NaN	NaN	NaN	0.11467	1	13232	13232		33.698	19.75	1	46639			12494	3239;7962	7239	7387	9871	9871					0.031851727796492924
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-6|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.5345429184333	3	370.534543	1108.5818	1.9421	0.00071961	-1.3347	-0.00049454	0.60742	0.00022507	370.53385230238587	15.51	0.40834	15.51	15.342	15.75	0	1440	91	0.7506418	0.055665016	0.7506418	456.5926	0	33.859375						700	18	4	NaN	NaN	NaN	0.056273	1	13233	13233		37.302	15.531	1	196730			12495	3239;7962	7239	7387	9872	9872					0.031851727796492924
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-6|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.5345429184333	3	370.534543	1108.5818	2.4362	0.00090271	-2.3996	-0.00088912	0.036659	1.3583E-05	370.5336564472163	16.179	0.38341	16.166	15.878	16.262	-0.012993	1440	82	0.7506418	0.050106704	0.7491224	456.59262	0	30.478394						406	17	2	NaN	NaN	NaN	0.098515	1	12859	12859		30.61	14.384	1	131610			12496	3239;7962	7239	7387	9873	9873					0.031851727796492924
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-6|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.5345429184333	3	370.534543	1108.5818	2.1197	0.00078542	-1.3969	-0.0005176	0.72279	0.00026782	370.5341083658076	16.323	0.23969	16.31	16.31	16.55	-0.012995	1437	76	0.7524962	0.046390057	0.75097674	457.72058	0	28.217651						208	11	2	NaN	NaN	NaN	0.24994	1	12860	12860		14.425	7.2947	1	53108			12497	3239;7962	7239	7387	9874	9874					0.031851727796492924
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8393424673001	2	568.839342	1135.66413	1.557	0.00088566	-1.4223	-0.00080908	0.13462	7.6577E-05	568.838812648945	21.055	0.12039	21.055	21.007	21.127	0	1227	58	0.88180584	0.034956157	0.88180584	357.48303	0	14.171173						193	6	4	NaN	NaN	NaN	0.1507	1	14311	14311		28.495	7.982	1	31020			12498	3500	7240	7388	9875	9875					0.10172650067943323
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.8393424673001	2	568.839342	1135.66413	1.0597	0.00060281	-2.3187	-0.001319	-1.259	-0.00071615	568.8377854072958	21.248	0.16856	21.234	21.138	21.306	-0.014004	1227	46	0.88180584	0.02759999	0.8802864	357.48306	0	11.188995						212	8	3	NaN	NaN	NaN	0.1507	1	13843	13843		28.495	10.526	1	27046			12499	3500	7240	7388	9876	9876					0.10172650067943323
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.33188157595	2	645.331882	1288.64921	1.8319	0.0011822	-4.1138	-0.0026548	-2.2819	-0.0014726	645.3294840270532	24.502	0.16879	24.502	24.454	24.623	0	1110	82	0.95342636	0.04948193	0.95342636	385.96704	0	20.031311						404	8	5	NaN	NaN	NaN	7.9125E-08	1	18571	18571		138.61	92.784	1	131820			12500	3823	7241	7389	9877	9877					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.55701320616663	3	430.557013	1288.64921	1.056	0.00045467	-1.1008	-0.00047394	-0.044753	-1.9269E-05	430.5565675064539	24.502	0.12055	24.502	24.478	24.598	0	1449	85	0.74507743	0.05190897	0.74507743	452.43076	0	31.520508						279	6	3	NaN	NaN	NaN	0.10363	1	18572	18572		25.681	18.392	1	33891			12501	3823	7241	7389	9878	9878					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.33188157595	2	645.331882	1288.64921	1.8352	0.0011843	-3.8973	-0.002515	-2.0621	-0.0013307	645.8310831890323	24.623	0.28938	24.61	24.514	24.803	-0.012394	1113	70	0.9515937	0.042137563	0.95007426	385.22516	0	17.058167						446	13	4	NaN	NaN	NaN	0.006197	1	17743	17743		100.15	54.981	1	112830			12502	3823	7241	7389	9879	9879					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.55701320616663	3	430.557013	1288.64921	0.90151	0.00038815	-0.53583	-0.0002307	0.36569	0.00015745	430.55653539052366	24.623	0.21708	24.61	24.538	24.755	-0.012394	1449	70	0.74507743	0.042646468	0.743558	452.43076	0	25.896057						274	10	3	NaN	NaN	NaN	0.070055	1	17744	17744		29.706	9.1929	1	26042			12503	3823	7241	7389	9880	9880					0.016431581999313494
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;nc|ENSG00000177885|P62993-2|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.35770239595	2	615.357702	1228.70085	1.1365	0.00069934	-2.3842	-0.0014671	-1.2477	-0.00076781	615.3562103956	28.556	0.12067	28.556	28.508	28.629	0	1131	52	0.94059354	0.031185508	0.94059354	380.96902	0	12.6311035						236	6	4	NaN	NaN	NaN	0.021751	1	17226	17226		69.782	47.932	1	50445			12504	5092	7242	7390	9881	9881					0.09564946684486131
KYFPYLVLL	9	Unmodified	_KYFPYLVLL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3442606697	2	578.344261	1154.67397	1.5362	0.00088845	-1.5165	-0.00087705	0.019703	1.1395E-05	578.3434676333685	32.37	0.19308	32.37	32.297	32.49	0	1173	73	0.91489893	0.04408604	0.91489893	370.8257	0	17.868896						385	9	4	NaN	NaN	NaN	0.21451	1	14987	14987		27.789	0	1	73167			12505	3041	7243	7391	9882	9882					0.10281838073319705
KYFPYLVLL	9	Unmodified						0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.344261	1154.67397	1.4319	0.00082814	-5.8473	-0.0033817	-4.4153	-0.0025536	578.3413181588583	32.634	0.072395	32.631	32.631	32.703	-0.0031052	1176	37	0.9130621	0.02204299	0.91154265	370.08124		8.934448	0.13062	-0.0045656	-0.0016781	NaN	27.789	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4425.1			12506	3041	7243	7391							0.10281838073319705
KYFQGDLQLF	10	Unmodified	_KYFQGDLQLF_					0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.82696337355	2	629.826963	1257.63937	1.5411	0.00097064	-2.8063	-0.0017675	-1.2651	-0.00079683	629.8250993933815	27.35	0.19311	27.35	27.302	27.495	0	1128	49	0.9424274	0.029340029	0.9424274	381.6142	0	11.880554						310	9	5	NaN	NaN	NaN	0.026551	1	17954	17954		60.984	29.308	1	68006			12507	334	7244	7392	9883	9883					0.02085970194548281
KYFQGDLQLF	10	Unmodified	_KYFQGDLQLF_					0	0	0		ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2;ENSG00000005882|ENST00000503176|PDK2	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	ENST00000512204.5_1_17:48185497-48187458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.82696337355	2	629.826963	1257.63937	1.1601	0.00073067	-4.0639	-0.0025596	-2.9038	-0.0018289	630.3250008234095	27.397	0.36198	27.387	27.242	27.604	-0.010126	1128	64	0.9424274	0.0385108	0.94090796	381.6142	0	15.594055						532	16	5	NaN	NaN	NaN	0.34693	1	17182	17182		25.801	2.6834	1	108640			12508	334	7244	7392	9884	9884					0.02085970194548281
KYFSFPVFF	9	Unmodified	_KYFSFPVFF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.3051355092	2	591.305136	1180.59572	0.95562	0.00056506	-5.6065	-0.0033151	-4.6508	-0.0027501	591.3018612292545	33.48	0.24121	33.48	33.407	33.648	0	1182	67	0.9093879	0.04042524	0.9093879	368.49646	0	16.38089						461	11	5	NaN	NaN	NaN	0.03618	1	15847	15847		52.78	22.17	1	119580			12509	2808	7245	7393	9885	9885					0.012644054880638578
KYFSFPVFF	9	Unmodified	_KYFSFPVFF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.3051355092	2	591.305136	1180.59572	0.46334	0.00027398	-3.3008	-0.0019518	-2.8374	-0.0016778	591.3030805749567	33.551	0.26543	33.549	33.476	33.742	-0.0018463	1182	64	0.9093879	0.03858155	0.90786844	368.49643	0	15.633789						448	12	5	NaN	NaN	NaN	0.21199	1	15263	15263		24.562	2.4357	1	117400			12510	2808	7245	7393	9886	9886					0.012644054880638578
KYFYSGKKF	9	Unmodified	_KYFYSGKKF_					0	0	0		tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.31349185755	2	584.313492	1166.61243	1.9491	0.0011389	-2.3354	-0.0013646	-0.38633	-0.00022574	584.3120463969121	21.561	0.19283	21.561	21.488	21.681	0	1218	94	0.8873258	0.05702144	0.8873258	359.60635	0	23.10907						246	9	3	NaN	NaN	NaN	0.21451	1	15369	15369		24.4	1.2236	1	31791			12511	13851	7246	7394	9887	9887					0.035789063740367055
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.27436669705	2	513.274367	1024.53418	1.8308	0.0009397	-1.7985	-0.0009231	0.032353	1.6606E-05	513.2735561100271	20.381	0.24044	20.381	20.357	20.597	0	1272	61	0.854179	0.03686565	0.854179	346.73334	0	14.964722						254	11	4	NaN	NaN	NaN	0.062072	1	9561	9561		41.785	8.3592	1	54236			12512	2145	7247	7395	9888	9888					0.02289473788800933
KYGALVNNF	9	Unmodified						0	0	0		ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENSG00000117481|ENST00000474844|NSUN4	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000495427.1_2_1:46810505-46812688:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.274367	1024.53418	1.164	0.00059747	-1.1418	-0.00058604	0.022263	1.1427E-05	513.2733301731026	20.429	0.19258	20.415	20.391	20.584	-0.014141	1275	67	0.85233563	0.040569723	0.8508162	345.98505		16.468323	0.017027	0.00036068	-0.0016814	NaN	41.785	217	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54143			12513	2145	7247	7395							0.02289473788800933
KYGCGGGG	8	Unmodified	_KYGCGGGG_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;AOX1|p.G450Wfs*8|1|0.35|ENSG00000138356|chr2:200612686-200612687|-/T|frameshift_variant	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	349.64995613565003	2	349.649956	697.285359	1.2894	0.00045084	8.5259	0.0029811	9.8153	0.0034319	349.6528065042607	32.732	0.19301	32.732	32.683	32.876	0	1485	40	0.72280174	0.02414906	0.72280174	295.22186	0	9.863434						144	9	2	NaN	NaN	NaN	0.84876	1	3173	3173		0.39566	0.39566	1	12256			12514	3151	7248	7396	9889	9889					-0.07539192719536914
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2818573781501	2	559.281857	1116.54916	1.8476	0.0010333	-2.9153	-0.0016305	-1.0677	-0.00059714	559.279970102103	30.053	0.16899	30.053	29.932	30.101	0	1236	76	0.876284	0.04600489	0.876284	355.31747	0	18.654144						216	8	3	NaN	NaN	NaN	0.19268	1	13528	13528		25.801	1.2389	1	33713			12515	4362	7249	7397	9890	9890					-0.004450791338513227
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.2503602845	2	488.25036	974.486168	2.0415	0.00099678	-1.8677	-0.00091189	0.17386	8.4886E-05	488.249475755276	21.874	0.24104	21.874	21.85	22.091	0	1311	52	0.83019954	0.03137821	0.83019954	337.22876	0	12.74588						311	11	4	NaN	NaN	NaN	0.65075	1	7734	7734		22.126	0.29135	1	72107			12516	3522	7250	7398	9891	9891					-0.0020960013124522447
KYGGGGGG	8	Unmodified	_KYGGGGGG_					0	0	0			REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF	REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.3049150505001	1	652.304915	651.297639	0.73968	0.0004825	-3.6171	-0.0023594	-2.8774	-0.0018769	652.3033356672278	31.862	0.14482	31.857	31.761	31.906	-0.0044155	1125	43	0.9442611	0.025669754	0.94274163	193.10487	0	5.2495575						70	7	2	NaN	NaN	NaN	0.84887	1	2007	2007		0.32989	0.054495	1	4005.9	+		12517	11895	7251	7399	9892	9892					-0.04195832984851222
KYGIQMPAF	9	Unmodified	_KYGIQMPAF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.77314527655	2	527.773145	1053.53174	1.3032	0.0006878	0.31436	0.00016591	1.6176	0.00085371	527.7728829303093	25.081	0.21713	25.069	24.996	25.214	-0.012011	1275	58	0.85233563	0.03503555	0.8508162	345.85876	0	14.216644						304	10	3	NaN	NaN	NaN	0.16171	1	10572	10572		27.789	8.6705	1	50549			12518	3279	7252	7400	9893	9893					0.007113020594943009
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		nc|ENSG00000149639|O94964-3|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.79767461785	2	565.797675	1129.5808	1.8896	0.0010691	-1.4418	-0.00081577	0.44783	0.00025338	565.7972005909074	27.06	0.1931	27.06	27.012	27.205	0	1218	100	0.8873258	0.06071335	0.8873258	359.74408	0	24.614685						466	9	4	NaN	NaN	NaN	0.0073225	1	14069	14069		97.85	56.893	1	199630			12519	3690	7253	7401	9894	9894					0.02118913620074636
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		nc|ENSG00000149639|O94964-3|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.79767461785	2	565.797675	1129.5808	1.3475	0.00076242	-1.0153	-0.00057447	0.33219	0.00018795	565.7969106478195	27.108	0.28961	27.098	27.001	27.291	-0.010126	1218	112	0.8873258	0.068050504	0.8858064	359.74408	0	27.589355						541	13	3	NaN	NaN	NaN	0.021105	1	13621	13621		70.6	32.469	1	199420			12520	3690	7253	7401	9895	9895					0.02118913620074636
KYGLFQHI	8	Unmodified	_KYGLFQHI_					0	0	0		DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.27945207495003	2	503.279452	1004.54435	1.708	0.00085959	-0.22575	-0.00011361	1.4822	0.00074597	503.27922226653095	19.468	0.11996	19.468	19.444	19.564	0	1254	37	0.8652351	0.022104979	0.8652351	351.3139	0	8.975372						153	6	3	NaN	NaN	NaN	0.11172	1	8774	8774		61.977	3.7412	1	17015			12521	254	7254	7402	9896	9896					0.0422608151403665
KYGLYILNM	9	Unmodified	_KYGLYILNM_					0	0	0			REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8019027160001	2	557.801903	1113.58925	1.354	0.00075528	-5.9522	-0.0033202	-4.5982	-0.0025649	558.2987202956807	22.79	0.14455	22.776	22.728	22.872	-0.01354	1212	82	0.8910048	0.04969603	0.88948536	361.2982	0	20.15149						204	7	4	NaN	NaN	NaN	0.25448	1	13051	13051		21.835	8.8322	1	21235	+		12522	13550	7255	7403	9897	9897					0.03700144265076233
KYGLYILNM	9	Unmodified						0	0	0			REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.801903	1113.58925	1.6321	0.0009104	-6.547	-0.0036519	-4.9149	-0.0027415	557.7979097665947	22.694	0.16883	22.694	22.67	22.838	0	1203	64	0.8965218	0.038623214	0.8965218	363.5353		15.66153	-0.041155	-0.00041791	0.0035182	NaN	21.835	138	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17521	+		12523	13550	7255	7403							0.03700144265076233
KYGLYILNM	9	Unmodified						0	0	0			REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	REV__tr|U7SXN2|U7SXN2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00902PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.801903	1113.58925	1.354	0.00075528	-5.9522	-0.0033202	-4.5982	-0.0025649	558.2987202956807	22.79	0.14455	22.776	22.728	22.872	-0.01354	1212	82	0.8910048	0.04969603	0.88948536	361.2982		20.15149	0.041155	0.00024559	-0.0035182	NaN	21.835	204	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21235	+		12524	13550	7255	7403							0.03700144265076233
KYGPIFTVF	9	Unmodified	_KYGPIFTVF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2973104771	2	536.29731	1070.58007	2.4254	0.0013008	-2.0804	-0.0011157	0.34509	0.00018507	536.2962390666966	28.629	0.2413	28.629	28.556	28.798	0	1293	103	0.84127116	0.0626716	0.84127116	341.29892	0	25.425507						1109	11	5	NaN	NaN	NaN	0.10363	1	11596	11596		35.296	5.6982	1	850830			12525	3555	7256	7404	9898	9898					0.04760118971034899
KYGPIFTVF	9	Unmodified	_KYGPIFTVF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5873444876	1	1071.58734	1070.58007	1.8246	0.0019552	0.44446	0.00047628	2.269	0.0024315	1071.5875124276204	28.653	0.072363	28.653	28.605	28.677	0	72	58	1.5758814	0.033567548	1.5758814	319.66687	0	6.8091736						80	4	2	NaN	NaN	NaN	0.21199	1	11597	11597		24.562	10.52	1	4539			12526	3555	7256	7404	9899	9899					0.04760118971034899
KYGPIFTVF	9	Unmodified	_KYGPIFTVF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2973104771	2	536.29731	1070.58007	1.6207	0.00086915	-1.7133	-0.00091882	-0.092622	-4.9673E-05	536.2962073076034	28.652	0.2654	28.644	28.572	28.837	-0.0083485	1293	100	0.84127116	0.06082499	0.8397517	341.29892	0	24.676361						1333	12	6	NaN	NaN	NaN	0.089764	1	11299	11299		37.302	4.8496	1	805200			12527	3555	7256	7404	9900	9900					0.04760118971034899
KYGPIFTVF	9	Unmodified	_KYGPIFTVF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5873444876	1	1071.58734	1070.58007	1.5829	0.0016963	-1.029	-0.0011027	0.55393	0.00059359	1071.5851310393848	28.676	0.072386	28.668	28.62	28.692	-0.0083504	72	64	1.5758814	0.03710103	1.5743619	319.66687	0	7.5259094						66	4	2	NaN	NaN	NaN	0.6532	1	11300	11300		3.2116	0	1	4105.4			12528	3555	7256	7404	9901	9901					0.04760118971034899
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.7927266257	2	487.792727	973.5709	1.7214	0.00083969	-1.2846	-0.00062664	0.43677	0.00021306	487.7921015946226	14.933	0.21619	14.933	14.885	15.101	0	1320	85	0.824661	0.051729262	0.824661	334.98337	0	21.012817						441	10	3	NaN	NaN	NaN	0.036402	1	7717	7717		103.03	34.918	1	68007			12529	1991	7257	7405	9902	9902					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.7927266257	2	487.792727	973.5709	1.2647	0.00061689	-0.89334	-0.00043577	0.37132	0.00018113	487.7925375323535	15.076	0.26435	15.064	14.968	15.232	-0.011738	1323	85	0.8228144	0.051729262	0.82129496	334.23328	0	21.012817						519	12	3	NaN	NaN	NaN	0.35353	1	7568	7568		38.918	5.2196	1	61994			12530	1991	7257	7405	9903	9903					0.08305770405377189
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.7474534548	2	472.747453	943.480354	1.4271	0.00067468	-3.4903	-0.00165	-2.0632	-0.00097537	472.74569684543866	24.743	0.19304	24.743	24.719	24.912	0	1371	100	0.79324204	0.060989797	0.79324204	322.36386	0	24.785522						569	9	4	NaN	NaN	NaN	0.3042	1	6902	6902		41.785	5.198	1	134120			12531	243	7258	7406	9904	9904					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.7474534548	2	472.747453	943.480354	0.52834	0.00024977	-1.562	-0.00073841	-1.0336	-0.00048864	472.7466594949308	24.767	0.193	24.755	24.707	24.9	-0.012392	1371	106	0.79324204	0.064679146	0.7917226	322.36386	0	26.28482						593	9	4	NaN	NaN	NaN	0.14443	1	6765	6765		55.494	23.933	1	118510			12532	243	7258	7406	9905	9905					0.006353013570901567
KYGPVVSLL	9	Unmodified	_KYGPVVSLL_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.2973104771	2	488.29731	974.580068	1.6981	0.00082918	-2.264	-0.0011055	-0.56592	-0.00027634	488.29618380179653	24.96	0.096546	24.96	24.936	25.033	0	1314	49	0.8283535	0.029533982	0.8283535	336.47845	0	11.996765						122	5	3	NaN	NaN	NaN	0.21199	1	7746	7746		24.562	6.763	1	14775			12533	3771	7259	7407	9906	9906					0.0917611897103825
KYGPVVSLL	9	Unmodified						0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	488.29731	974.580068	1.3957	0.00068154	-1.1201	-0.00054693	0.27567	0.00013461	488.29689026498517	24.984	0.096504	24.972	24.948	25.044	-0.012392	1317	67	0.8265074	0.040596068	0.82498795	335.72855		16.490173	0.0057613	0.00061515	-0.0016828	NaN	24.562	141	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12980			12534	3771	7259	7407							0.0917611897103825
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2	ENST00000567262.5_1_X:135958813-135961586:-|nuORF	ENST00000567262.5_1_X:135958813-135961586:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.8267664083	2	538.826766	1075.63898	1.736	0.00093539	-1.857	-0.0010006	-0.12106	-6.5228E-05	538.8256261165549	19.324	0.095949	19.324	19.276	19.372	0	1221	40	0.885486	0.023917377	0.885486	359.21518	0	9.702545						123	5	3	NaN	NaN	NaN	0.02857	1	11808	11808		60.982	37.131	1	14114			12535	3593	7260	7408	9907	9907					0.1041859526535518
KYGRIVEVL	9	Unmodified						0	0	0		ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENSG00000170748|ENST00000306904|RBMXL2	ENST00000567262.5_1_X:135958813-135961586:-|nuORF	ENST00000567262.5_1_X:135958813-135961586:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.826766	1075.63898	1.6771	0.00090366	-2.126	-0.0011455	-0.44891	-0.00024188	539.327457429342	19.731	0.096233	19.717	19.645	19.741	-0.014141	1224	31	0.883646	0.018402934	0.88212657	358.46875		7.465515	0.19642	-0.00023038	-0.0016797	NaN	60.982	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5392.2			12536	3593	7260	7408							0.1041859526535518
KYGSVTVW	8	Unmodified	_KYGSVTVW_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.25036028449995	2	470.25036	938.486168	1.0554	0.00049631	-1.7828	-0.00083838	-0.72741	-0.00034207	470.2493715001325	20.381	0.096115	20.381	20.357	20.453	0	1386	37	0.78399014	0.022210538	0.78399014	318.62833	0	9.026794						139	5	3	NaN	NaN	NaN	0.45125	1	6789	6789		33.698	0	1	19704			12537	3698	7261	7409	9908	9908					0.014463998687460844
KYGSVTVW	8	Unmodified	_KYGSVTVW_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.25036028449995	2	470.25036	938.486168	0.24001	0.00011286	-0.076997	-3.6208E-05	0.16301	7.6655E-05	470.2504519488077	20.429	0.14447	20.415	20.367	20.511	-0.014141	1386	37	0.78399014	0.022210538	0.7824707	318.62833	0	9.026794						147	7	3	NaN	NaN	NaN	0.43738	1	6650	6650		34.439	6.65	1	19230			12538	3698	7261	7409	9909	9909					0.014463998687460844
KYGSYNVFW	9	Unmodified	_KYGSYNVFW_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2796490402001	2	582.279649	1162.54475	2.1324	0.0012416	-2.7398	-0.0015953	-0.60738	-0.00035367	582.2786817400973	25.226	0.19302	25.226	25.129	25.322	0	1218	79	0.8873258	0.047816634	0.8873258	359.62106	0	19.379456						306	9	3	NaN	NaN	NaN	0.31471	1	15229	15229		17.97	7.6095	1	56977			12539	2009	7262	7410	9910	9910					-0.030025435567722525
KYGSYNVFW	9	Unmodified	_KYGSYNVFW_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.2796490402001	2	582.279649	1162.54475	1.9405	0.0011299	-1.0041	-0.00058466	0.9364	0.00054525	582.2792984309879	25.25	0.26536	25.238	25.165	25.431	-0.012011	1218	97	0.8873258	0.05885768	0.8858064	359.62106	0	23.854218						348	12	3	NaN	NaN	NaN	0.060816	1	14711	14711		42.318	16.203	1	59880			12540	2009	7262	7410	9911	9911					-0.030025435567722525
KYGTLDVTF	9	Unmodified	_KYGTLDVTF_					0	0	0		nc|ENSG00000143469|Q8NB59-4|SYT14;nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	nc|ENSG00000143469|Q8NB59-4|SYT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.27403234605	2	522.274032	1042.53351	1.6493	0.0008614	-2.8174	-0.0014715	-1.1681	-0.00061008	522.2719802755538	23.778	0.16871	23.765	23.741	23.91	-0.013048	1284	61	0.8468043	0.036881566	0.8452849	343.66107	0	14.967773						188	8	3	NaN	NaN	NaN	0.10363	1	10119	10119		35.296	5.6982	1	29590			12541	3425	7263	7411	9912	9912					0.013946343490943036
KYGVHEAIF	9	Unmodified	_KYGVHEAIF_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.28219172915	2	532.282192	1062.54983	2.2854	0.0012165	-0.8757	-0.00046612	1.4097	0.00075033	532.2816860432853	18.101	0.1439	18.101	18.053	18.197	0	1251	58	0.8670771	0.03499776	0.8670771	351.802	0	14.199738						175	7	3	NaN	NaN	NaN	0.070055	1	11240	11240		40.154	12.365	1	16914			12542	1848	7264	7412	9913	9913					0.02105760305835247
KYGVHEAIF	9	Unmodified	_KYGVHEAIF_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.28219172915	2	532.282192	1062.54983	1.5895	0.00084608	0.069346	3.6912E-05	1.6589	0.000883	532.2827337420072	18.266	0.21597	18.252	18.18	18.396	-0.01395	1248	73	0.8689189	0.044219613	0.86739945	352.5493	0	17.941376						187	10	3	NaN	NaN	NaN	0.054111	1	10987	10987		45.165	27.195	1	17006			12543	1848	7264	7412	9914	9914					0.02105760305835247
KYGVTFYNF	9	Unmodified	_KYGVTFYNF_					0	0	0		ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.78202455365	2	569.782025	1137.5495	1.9151	0.0010912	-1.2581	-0.00071683	0.65701	0.00037435	569.7815504118281	24.96	0.24131	24.96	24.864	25.105	0	1227	103	0.88180584	0.062543035	0.88180584	357.47595	0	25.35434						469	11	3	NaN	NaN	NaN	0.059222	1	14367	14367		42.995	12.959	1	97063			12544	7353	7265	7413	9915	9915					-0.013776594140153975
KYGVTFYNF	9	Unmodified	_KYGVTFYNF_					0	0	0		ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	ENST00000510737.1_1_4:120160395-120160458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.78202455365	2	569.782025	1137.5495	1.404	0.00079998	-0.15159	-8.6371E-05	1.2524	0.00071361	569.782476200096	24.984	0.24127	24.972	24.851	25.093	-0.012392	1230	112	0.8799654	0.068050504	0.878446	356.72986	0	27.587036						513	11	4	NaN	NaN	NaN	0.03618	1	13895	13895		52.78	24.991	1	98239			12545	7353	7265	7413	9916	9916					-0.013776594140153975
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.8503081609333	3	387.850308	1160.5291	1.8201	0.00070594	2.8738	0.0011146	4.694	0.0018206	388.18649574135287	17.885	0.16792	17.885	17.837	18.005	0	1536	58	0.69119483	0.035348415	0.69119483	420.20203	0	21.489594						150	8	2	NaN	NaN	NaN	0.10956	1	15156	15156		30.035	19.07	1	20710			12546	7920;1366	7266	7414	9917	9917					-0.04474830073831981
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2718240081	2	581.271824	1160.5291	2.3481	0.0013649	2.1054	0.0012238	4.4534	0.0025887	581.2717787129902	18.05	0.36	18.036	17.892	18.252	-0.013786	1239	106	0.87444305	0.06437206	0.8729236	354.40704	0	26.08966						808	16	4	NaN	NaN	NaN	0.11656	1	14643	14643		33.425	10.308	1	145840			12547	7920;1366	7266	7414	9918	9918					-0.04474830073831981
KYHGYPYSF	9	Unmodified						0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.271824	1160.5291	2.5282	0.0014696	6.5753	0.003822	9.1035	0.0052916	581.7784346804755	17.885	0.43165	17.885	17.693	18.125	0	1236	100	0.876284	0.06069368	0.876284	355.15317		24.598816	-0.075522	0.0030863	0.0016802	NaN	33.425	1146	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149620			12548	7920;1366	7266	7414							-0.04474830073831981
KYIATDFTL	9	Unmodified	_KYIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2896824102501	2	536.289682	1070.56481	1.1712	0.00062812	-1.6317	-0.00087509	-0.46051	-0.00024697	536.2892650918944	24.333	0.1931	24.32	24.272	24.465	-0.012749	1260	61	0.8615505	0.036849678	0.8600311	349.5262	0	14.949707						361	9	4	NaN	NaN	NaN	0.015029	1	11292	11292		78.289	45.837	1	74898			12549	885	7267	7415	9919	9919					0.0323520738318166
KYIDEVYKNFD	11	Unmodified	_KYIDEVYKNFD_					0	0	0		tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.35099957585	2	717.351	1432.68745	1.3957	0.0010012	5.8748	0.0042143	7.2705	0.0052155	717.3548459480445	21.73	0.12037	21.73	21.705	21.826	0	1062	58	0.9827221	0.03475678	0.9827221	397.40207	0	14.055298						159	6	3	NaN	NaN	NaN	0.58731	1	20287	20287		14.854	5.9349	1	10773			12550	13968	7268	7416	9920	9920					-0.011590006760570759
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.29275641545	2	592.292756	1182.57096	1.3185	0.00078094	0.44937	0.00026616	1.7679	0.0010471	592.2935459969541	24.333	0.16892	24.333	24.285	24.454	0	1176	106	0.9130621	0.0643304	0.9130621	369.97815	0	26.067047						328	8	4	NaN	NaN	NaN	0.017558	1	15921	15921		75.089	48.974	1	132900			12551	364	7269	7417	9921	9921					-0.013022743853071006
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.29275641545	2	592.292756	1182.57096	1.2836	0.00076027	-2.4398	-0.0014451	-1.1562	-0.0006848	592.2911344871242	24.381	0.38603	24.368	24.32	24.706	-0.012749	1185	97	0.90755045	0.05883217	0.906031	367.7448	0	23.839142						725	17	4	NaN	NaN	NaN	0.010404	1	15317	15317		91.563	69.713	1	199500			12552	364	7269	7417	9922	9922					-0.013022743853071006
KYIDKTIRV	9	Unmodified	_KYIDKTIRV_					0	0	0		ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.2326410236666	3	379.232641	1134.67609	1.3453	0.00051019	-1.9167	-0.00072688	-0.57139	-0.00021669	379.2320575779958	14.765	0.072033	14.765	14.765	14.837	0	1473	28	0.7302302	0.016709447	0.7302302	444.0516	0	10.16098						50	4	2	NaN	NaN	NaN	0.13384	1	14280	14280		30.925	12.692	1	5421.9			12553	2637	7270	7418	9923	9923					0.11414266811107154
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3111461338501	2	575.311146	1148.60774	1.7724	0.0010197	-3.2683	-0.0018803	-1.4958	-0.00086057	575.3101067617879	22.26	0.12061	22.26	22.212	22.332	0	1185	67	0.90755045	0.04042524	0.90755045	367.87018	0	16.38617						217	6	4	NaN	NaN	NaN	0.007016	1	14765	14765		75.089	2.6605	1	34795			12554	5000	7271	7419	9924	9924					0.039379774406370416
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3111461338501	2	575.311146	1148.60774	1.0269	0.0005908	2.4824	0.0014281	3.5093	0.0020189	575.3135430038086	22.284	0.096371	22.27	22.246	22.342	-0.013731	1185	76	0.90755045	0.04592049	0.906031	367.87015	0	18.613586						215	5	3	NaN	NaN	NaN	0.26393	1	14265	14265		30.035	8.2643	1	42143			12555	5000	7271	7419	9925	9925					0.039379774406370416
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3344242649001	2	577.334424	1152.6543	1.8568	0.001072	-2.1058	-0.0012158	-0.24898	-0.00014375	577.33341819536	20.573	0.24087	20.573	20.525	20.766	0	1200	61	0.89836043	0.03676611	0.89836043	364.12985	0	14.902313						426	11	5	NaN	NaN	NaN	0.00039948	1	14898	14898		141.69	53.915	1	361460			12556	882	7272	7420	9926	9926					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.2253749988	3	385.225375	1152.6543	1.1601	0.0004469	-3.5715	-0.0013758	-2.4114	-0.00092895	385.22370548038424	20.67	0.14469	20.656	20.608	20.752	-0.014086	1449	31	0.74507743	0.018542886	0.743558	452.99548	0	11.273834						64	7	2	NaN	NaN	NaN	0.43456	1	14402	14402		12.307	1.3416	1	14499			12557	882	7272	7420	9927	9927					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-3|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000112640|Q14738-2|PPP2R5D;nc|ENSG00000112640|Q14738-3|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;nc|ENSG00000154001|Q16537-3|PPP2R5E;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF	nc|ENSG00000078304|Q13362-3|PPP2R5C	nc|ENSG00000078304|Q13362-3|PPP2R5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3344242649001	2	577.334424	1152.6543	1.5101	0.00087186	-2.1402	-0.0012356	-0.63004	-0.00036374	577.3333205653049	20.67	0.2891	20.656	20.584	20.873	-0.014086	1194	61	0.902037	0.03676611	0.9005176	365.6201	0	14.902313						470	13	4	NaN	NaN	NaN	0.011349	1	14403	14403		110.61	49.624	1	323940			12558	882	7272	7420	9928	9928					0.08407462062564264
KYIDYIFNV	9	Unmodified	_KYIDYIFNV_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8107819931	2	587.810782	1173.60701	2.1984	0.0012923	0.2084	0.0001225	2.4068	0.0014148	587.8110917057186	27.953	0.21718	27.953	27.905	28.122	0	1164	103	0.9204082	0.062468708	0.9204082	372.98767	0	25.314941						502	10	5	NaN	NaN	NaN	7.4733E-08	1	15606	15606		138.77	57.074	1	281870			12559	3172	7273	7421	9929	9929					0.027151827915531612
KYIDYIFNV	9	Unmodified	_KYIDYIFNV_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8107819931	2	587.810782	1173.60701	1.3858	0.0008146	0.16389	9.6336E-05	1.5497	0.00091093	587.8107264740045	27.977	0.26542	27.968	27.919	28.185	-0.0089798	1164	97	0.9204082	0.05876869	0.91888875	372.98767	0	23.815552						519	12	5	NaN	NaN	NaN	6.5392E-05	1	15053	15053		125.02	42.06	1	277880			12560	3172	7273	7421	9930	9930					0.027151827915531612
KYIDYLMTW	9	Oxidation (M)	_KYIDYLM(Oxidation (M))TW_		KYIDYLM(1)TW		KYIDYLM(100)TW	0	0	1		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8020996812501	2	624.8021	1247.58965	2.2454	0.001403	-1.8113	-0.0011317	0.43417	0.00027127	624.8012568116891	26.143	0.24136	26.143	26.07	26.312	0	1143	79	0.9332562	0.047703207	0.9332562	377.93356	0	19.317993						491	11	5	NaN	NaN	NaN	0.0042638	1	17711	17711		104.2	56.196	1	126420			12561	1982	7274	7422	9931	9931		223			-0.024244808057346745
KYIDYLMTW	9	Oxidation (M)	_KYIDYLM(Oxidation (M))TW_		KYIDYLM(1)TW		KYIDYLM(110)TW	0	0	1		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8020996812501	2	624.8021	1247.58965	1.6967	0.0010601	-0.50516	-0.00031563	1.1915	0.00074445	624.8017592474932	26.143	0.26541	26.131	26.107	26.373	-0.011137	1143	79	0.9332562	0.047708333	0.93173677	377.93356	0	19.320068						579	12	4	NaN	NaN	NaN	0.0028258	1	16970	16970		108.53	65.536	1	136200			12562	1982	7274	7422	9932	9932		223			-0.024244808057346745
KYIENLDNITF	11	Unmodified	_KYIENLDNITF_					0	0	0		ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3535422647999	2	685.353542	1368.69253	2.5532	0.0017499	-2.4196	-0.0016583	0.13361	9.1567E-05	685.3520840176391	25.926	0.24132	25.926	25.853	26.094	0	1050	106	0.9900381	0.06403953	0.9900381	400.53958	0	25.908508						560	11	4	NaN	NaN	NaN	0.030127	1	19787	19787		56.466	32.065	1	117540			12563	525	7275	7423	9933	9933					0.02293303186547746
KYIENLDNITF	11	Unmodified	_KYIENLDNITF_					0	0	0		ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3535422647999	2	685.353542	1368.69253	2.4804	0.0016999	-2.1461	-0.0014708	0.33426	0.00022909	685.3524531589552	25.949	0.24138	25.938	25.841	26.083	-0.0116	1050	103	0.9900381	0.062206447	0.9885187	400.53958	0	25.1669						618	11	4	NaN	NaN	NaN	0.016347	1	18862	18862		64.375	35.879	1	120080			12564	525	7275	7423	9934	9934					0.02293303186547746
KYIERIITRF	10	Unmodified	_KYIERIITRF_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.93459504199996	3	446.934595	1337.78196	1.1969	0.00053494	-1.5213	-0.00067994	-0.32443	-0.000145	446.9342573501504	20.069	0.26433	20.069	19.972	20.237	0	1395	37	0.7784366	0.02221781	0.7784366	472.50348	0	13.485962						223	12	3	NaN	NaN	NaN	0.3742	1	19377	19377		24.67	10.221	1	29561			12565	2346	7276	7424	9935	9935					0.12657602656577183
KYIHFTPNF	9	Unmodified	_KYIHFTPNF_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.803291312	2	583.803291	1165.59203	1.2316	0.00071903	-0.23391	-0.00013656	0.99772	0.00058247	583.8030591505949	20.983	0.24081	20.969	20.825	21.065	-0.014088	1197	85	0.9001988	0.051455915	0.8986794	364.82712	0	20.85373						536	11	4	NaN	NaN	NaN	0.13384	1	14795	14795		40.957	26.532	1	93109			12566	3126	7277	7425	9936	9936					0.01585735714229486
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7954662799	2	522.795466	1043.57638	1.7908	0.00093622	-1.4251	-0.00074502	0.36574	0.0001912	522.794824886419	14.981	0.31235	14.981	14.909	15.222	0	1251	79	0.8670771	0.04790461	0.8670771	351.88385	0	19.44101						579	14	5	NaN	NaN	NaN	0.0012818	1	10366	10366		113.18	68.018	1	391870			12567	749;1184	7278	7426	9937	9937					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	348.86606967546663	3	348.86607	1043.57638	1.5499	0.00054071	-0.31557	-0.00011009	1.2343	0.00043062	348.8657517297963	14.981	0.096093	14.981	14.957	15.053	0	1572	40	0.6688489	0.024222553	0.6688489	407.1509	0	14.745117						71	5	2	NaN	NaN	NaN	0.070055	1	10368	10368		41.839	18.662	1	6548			12568	749;1184	7278	7426	9938	9938					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7954662799	2	522.795466	1043.57638	1.905	0.00099594	-2.7253	-0.0014248	-0.8203	-0.00042885	522.7939496491703	15.22	0.45592	15.208	15.04	15.496	-0.012202	1251	91	0.8670771	0.055292487	0.8655577	351.88385	0	22.439209						761	20	4	NaN	NaN	NaN	0.00065562	1	10161	10161		115.07	75.611	1	388150			12569	749;1184	7278	7426	9939	9939					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	348.86606967546663	3	348.86607	1043.57638	2.298	0.0008017	-1.4819	-0.00051698	0.81614	0.00028472	348.8654651031944	15.244	0.096067	15.232	15.16	15.256	-0.012201	1569	31	0.6707121	0.018633783	0.6691927	408.28513	0	11.343018						59	5	2	NaN	NaN	NaN	0.089764	1	10162	10162		27.046	16.185	1	3709.3			12570	749;1184	7278	7426	9940	9940					0.05633449197171103
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.22051252156655	3	411.220513	1230.63971	2.0275	0.00083375	-1.9118	-0.00078615	0.11574	4.7595E-05	411.21957397080587	18.197	0.16784	18.197	18.149	18.316	0	1413	55	0.7673241	0.03335917	0.7673241	466.17203	0	20.266693						200	8	4	NaN	NaN	NaN	0.059222	1	17277	17277		32.377	22.133	1	43296			12571	1345	7279	7427	9941	9941					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3271305490499	2	616.327131	1230.63971	1.6755	0.0010326	0.11499	7.0871E-05	1.7904	0.0011035	616.3279431891704	18.173	0.071985	18.173	18.173	18.245	0	1122	34	0.9460945	0.020165801	0.9460945	383.19034	0	8.167633						57	4	2	NaN	NaN	NaN	0.15381	1	17278	17278		28.296	11.437	1	4792.9			12572	1345	7279	7427	9942	9942					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.22051252156655	3	411.220513	1230.63971	1.6985	0.00069845	-1.4195	-0.00058373	0.27899	0.00011472	411.22006581567365	18.554	0.35995	18.54	18.42	18.78	-0.01395	1419	43	0.76361835	0.025946021	0.7620989	463.92065	0	15.76297						344	16	3	NaN	NaN	NaN	0.059222	1	16563	16563		32.377	25.947	1	48132			12573	1345	7279	7427	9943	9943					0.03361389914380197
KYIKDDFRF	9	Unmodified						0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.327131	1230.63971	2.1011	0.001295	-2.5331	-0.0015612	-0.432	-0.00026625	616.3255081967382	18.314	0.14393	18.3	18.204	18.348	-0.01395	1137	25	0.9369253	0.014674723	0.93540585	379.4766		5.943634	0.063493	-0.0020925	-0.0053443	NaN	28.296	66	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4176.1			12574	1345	7279	7427							0.03361389914380197
KYIKEAVRL	9	Unmodified	_KYIKEAVRL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.9010028163	3	373.901003	1118.68118	1.4149	0.00052902	-1.6014	-0.00059876	-0.18652	-6.974E-05	373.9002376537878	14.693	0.21607	14.693	14.621	14.837	0	1482	43	0.72465914	0.026002407	0.72465914	440.73938	0	15.814697						278	10	4	NaN	NaN	NaN	0.11323	1	13634	13634		33.907	16.709	1	57704			12575	3242	7280	7428	9944	9944					0.12658570673738723
KYIKEAVRL	9	Unmodified	_KYIKEAVRL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.34786599115	2	560.347866	1118.68118	1.3305	0.00074556	0.38118	0.00021359	1.7117	0.00095915	560.3483406387729	14.669	0.16809	14.669	14.621	14.789	0	1167	34	0.91857195	0.02020061	0.91857195	372.45578	0	8.190796						129	8	2	NaN	NaN	NaN	0.033148	1	13635	13635		61.199	20.242	1	15191			12576	3242	7280	7428	9945	9945					0.12658570673738723
KYIKEAVRL	9	Unmodified	_KYIKEAVRL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.9010028163	3	373.901003	1118.68118	2.0019	0.0007485	-3.0998	-0.001159	-1.0979	-0.0004105	374.23345479459755	15.22	0.072048	15.208	15.184	15.256	-0.012202	1482	31	0.72465914	0.018575132	0.7231397	440.73938	0	11.297455						38	4	2	NaN	NaN	NaN	0.21462	1	13228	13228		24.393	8.1676	1	4473.9			12577	3242	7280	7428	9946	9946					0.12658570673738723
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.3546283907501	2	529.354628	1056.6947	0.92497	0.00048964	-0.52555	-0.0002782	0.39942	0.00021144	529.3547448894815	31.573	0.096552	31.573	31.549	31.646	0	1230	46	0.8799654	0.027602911	0.8799654	357.05655	0	11.200195						136	5	3	NaN	NaN	NaN	0.043119	1	10960	10960		49.833	18.272	1	22895			12578	760	7281	7429	9947	9947					0.16862428452986933
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	nc|ENSG00000070366|Q86US8-2|SMG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.3546283907501	2	529.354628	1056.6947	0.23261	0.00012313	-0.10431	-5.5218E-05	0.1283	6.7916E-05	529.3542260348211	31.62	0.14481	31.616	31.544	31.688	-0.0044155	1224	43	0.883646	0.025761366	0.88212657	358.55	0	10.452972						185	7	3	NaN	NaN	NaN	0.23112	1	10734	10734		23.334	4.2161	1	22727			12579	760	7281	7429	9948	9948					0.16862428452986933
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.29275641545	2	550.292756	1098.57096	1.5616	0.00085934	-0.92393	-0.00050843	0.63767	0.00035091	550.2917280397147	15.75	0.19191	15.75	15.726	15.918	0	1251	58	0.8670771	0.035001516	0.8670771	351.65436	0	14.1953125						388	9	5	NaN	NaN	NaN	0.0068607	1	12792	12792		98.792	53.627	1	75215			12580	1292	7282	7430	9949	9949					0.02561725614691568
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.29275641545	2	550.292756	1098.57096	2.0884	0.0011492	0.11256	6.1941E-05	2.201	0.0012112	550.2924757392798	15.82	0.26344	15.807	15.735	15.999	-0.012611	1251	61	0.8670771	0.036845744	0.8655577	351.65436	0	14.943237						436	12	4	NaN	NaN	NaN	0.014177	1	12460	12460		80.241	37.923	1	81563			12581	1292	7282	7430	9950	9950					0.02561725614691568
KYIQEAEML	9	Unmodified	_KYIQEAEML_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.78644961705	2	562.78645	1123.55835	1.5742	0.00088592	-1.0571	-0.00059492	0.51708	0.00029101	562.7856585818091	20.453	0.1442	20.453	20.405	20.549	0	1212	61	0.8910048	0.03679794	0.8910048	361.25897	0	14.919769						242	7	4	NaN	NaN	NaN	0.042816	1	13825	13825		49.961	15.523	1	27537			12582	1300	7283	7431	9951	9951					0.0015094616016995133
KYIQEAEML	9	Unmodified	_KYIQEAEML_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.78644961705	2	562.78645	1123.55835	1.2612	0.00070979	-1.0292	-0.00057923	0.23199	0.00013056	562.7859052943741	20.477	0.24075	20.463	20.319	20.559	-0.014141	1212	64	0.8910048	0.038639963	0.88948536	361.25897	0	15.666595						248	11	4	NaN	NaN	NaN	0.048656	1	13401	13401		47.482	30.623	1	29205			12583	1300	7283	7431	9952	9952					0.0015094616016995133
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(50)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7839069281	2	570.783907	1139.55326	2.2136	0.0012635	4.2087	0.0024023	6.4223	0.0036657	570.787420429798	17.885	0.071899	17.885	17.861	17.933	0	1215	76	0.8891654	0.045999944	0.8891654	360.45184	0	18.647552						190	4	4	NaN	NaN	NaN	0.041983	1	14428	14428		50.315	13.013	1	50721			12584	1300	7283	7432	9953	9953		145			-0.01093357702461617
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(56)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7839069281	2	570.783907	1139.55326	1.7204	0.00098197	2.1745	0.0012412	3.8949	0.0022232	570.7856549301974	17.954	0.11999	17.94	17.892	18.012	-0.013786	1215	85	0.8891654	0.051528275	0.88764596	360.45184	0	20.888641						295	6	4	NaN	NaN	NaN	0.032689	1	13957	13957		55.592	32.257	1	55419			12585	1300	7283	7432	9954	9954		145			-0.01093357702461617
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.55578374136667	3	393.555784	1177.64552	1.6968	0.00066778	-1.7559	-0.00069106	-0.059155	-2.3281E-05	393.5550743548317	13.252	0.28821	13.252	13.204	13.493	0	1548	76	0.6837494	0.046526253	0.6837494	415.60486	0	28.280151						498	13	4	NaN	NaN	NaN	0.032689	1	15758	15758		42.779	14.483	1	218460			12586	3963	7284	7433	9955	9955					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.83003737875	2	589.830037	1177.64552	2.0205	0.0011917	-0.91732	-0.00054106	1.1031	0.00065067	589.8296928511315	13.252	0.28821	13.252	13.204	13.493	0	1197	61	0.9001988	0.036770105	0.9001988	364.78345	0	14.900177						493	13	5	NaN	NaN	NaN	2.4842E-13	1	15759	15759		153.86	78.164	1	306140			12587	3963	7284	7433	9956	9956					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.55578374136667	3	393.555784	1177.64552	1.5498	0.00060992	-1.8157	-0.00071457	-0.2659	-0.00010465	393.5550756011016	13.397	0.35985	13.387	13.291	13.651	-0.010098	1548	61	0.6837494	0.0372352	0.68222994	415.60486	0	22.63272						581	16	4	NaN	NaN	NaN	0.03618	1	15186	15186		40.006	11.511	1	222880			12588	3963	7284	7433	9957	9957					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.83003737875	2	589.830037	1177.64552	1.444	0.00085172	-1.3341	-0.00078691	0.10987	6.4804E-05	589.8292240493033	13.397	0.45575	13.387	13.267	13.723	-0.010098	1197	55	0.9001988	0.033085942	0.8986794	364.78345	0	13.407288						644	20	5	NaN	NaN	NaN	0.0021374	1	15187	15187		110.61	40.006	1	284870			12589	3963	7284	7433	9958	9958					0.0638048842608896
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3380295863501	2	589.33803	1176.66151	0.93415	0.00055053	-1.9091	-0.0011251	-0.9749	-0.00057455	589.3368351416531	12.748	0.14414	12.748	12.724	12.868	0	1185	46	0.90755045	0.027567148	0.90755045	367.76608	0	11.1710205						189	7	4	NaN	NaN	NaN	0.015029	1	15720	15720		78.289	22.698	1	20262			12590	5308	7285	7434	9959	9959					0.08024194662993978
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.22777854643334	3	393.227779	1176.66151	1.0574	0.00041579	-1.8534	-0.00072879	-0.79598	-0.000313	393.22760313264973	12.918	0.23965	12.909	12.813	13.052	-0.00947	1548	34	0.6837494	0.020480454	0.68222994	415.6089	0	12.448822						200	11	3	NaN	NaN	NaN	0.16171	1	15150	15150		19.336	2.6775	1	17084			12591	5308	7285	7434	9960	9960					0.08024194662993978
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3380295863501	2	589.33803	1176.66151	0.92908	0.00054754	0.34892	0.00020563	1.278	0.00075318	589.3385747304881	12.942	0.21572	12.933	12.813	13.028	-0.00947	1185	40	0.90755045	0.023891509	0.906031	367.76608	0	9.681549						159	10	3	NaN	NaN	NaN	0.059222	1	15151	15151		42.995	15.206	1	14939			12592	5308	7285	7434	9961	9961					0.08024194662993978
KYIQRRLKPM	10	Unmodified	_KYIQRRLKPM_					0	0	0			REV__ENSG00000161956|ENST00000321337|SENP3	REV__ENSG00000161956|ENST00000321337|SENP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.9359415488	3	444.935942	1331.786	1.2354	0.00054968	-4.1774	-0.0018587	-2.942	-0.001309	445.26788878515833	16.182	0.072035	16.182	16.158	16.23	0	1374	34	0.791392	0.020354152	0.791392	480.3894	0	12.355316						81	4	3	NaN	NaN	NaN	0.76991	1	19288	19288		2.9701	0.93422	1	7059	+		12593	10221	7286	7435	9962	9962					0.1333736887863779
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2796490402001	2	522.279649	1042.54475	1.4024	0.00073245	-1.7094	-0.0008928	-0.30701	-0.00016035	522.2786948547118	14.765	0.21611	14.765	14.717	14.933	0	1203	46	0.8965218	0.02758205	0.8965218	363.838	0	11.193726						194	10	2	NaN	NaN	NaN	0.030696	1	10330	10330		58.2	34.349	1	60801			12594	94	7287	7436	9963	9963					0.025174564432290936
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2796490402001	2	522.279649	1042.54475	1.5014	0.00078416	-1.3172	-0.00068797	0.18417	9.6186E-05	522.2790264587958	14.765	0.21613	14.765	14.693	14.909	0	1269	121	0.8560222	0.0736596	0.8560222	347.40192	0	29.893463						514	10	4	NaN	NaN	NaN	0.00019594	1	10331	10331		117.07	47.321	1	117140			12595	94	7287	7436	9964	9964					0.025174564432290936
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2796490402001	2	522.279649	1042.54475	1.1703	0.00061122	-1.6841	-0.00087959	-0.51384	-0.00026837	522.278853666999	14.908	0.24037	14.896	14.8	15.04	-0.011738	1206	43	0.894683	0.025744617	0.89316356	363.09177	0	10.448029						318	11	4	NaN	NaN	NaN	0.02857	1	10123	10123		60.982	27.283	1	59292			12596	94	7287	7436	9965	9965					0.025174564432290936
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;ENSG00000117724|ENST00000366955|CENPF	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2796490402001	2	522.279649	1042.54475	1.2728	0.00066478	-1.5661	-0.00081795	-0.29328	-0.00015317	522.2786537831599	14.884	0.26439	14.872	14.8	15.064	-0.011737	1269	94	0.8560222	0.057169557	0.85450274	347.40192	0	23.201294						494	12	4	NaN	NaN	NaN	0.032689	1	10124	10124		55.592	28.86	1	101650			12597	94	7287	7436	9966	9966					0.025174564432290936
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.30840647965	2	546.308406	1090.60226	1.6422	0.00089713	-1.8785	-0.0010262	-0.2363	-0.00012909	546.3074447080818	14.309	0.216	14.309	14.261	14.477	0	1251	55	0.8670771	0.033150375	0.8670771	351.6862	0	13.44577						289	10	3	NaN	NaN	NaN	0.0032273	1	12436	12436		107.32	43.557	1	113070			12598	1383	7288	7437	9967	9967					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.5413631419666	3	364.541363	1090.60226	2.2607	0.00082412	-3.134	-0.0011425	-0.87328	-0.00031835	364.53991472882484	14.404	0.071852	14.393	14.393	14.465	-0.011218	1569	31	0.6707121	0.018633783	0.6691927	408.05624	0	11.33667						50	4	2	NaN	NaN	NaN	0.14787	1	12122	12122		20.688	9.1263	1	3143.9			12599	1383	7288	7437	9968	9968					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.30840647965	2	546.308406	1090.60226	1.4268	0.00077948	-1.0411	-0.00056875	0.38573	0.00021073	546.3079632400915	14.428	0.23956	14.417	14.345	14.585	-0.011219	1251	52	0.8670771	0.031306982	0.8655577	351.6862	0	12.69809						359	11	4	NaN	NaN	NaN	0.026443	1	12124	12124		63.765	10.985	1	107470			12600	1383	7288	7437	9969	9969					0.060582986487816015
KYISKPENLKL	11	Unmodified	_KYISKPENLKL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.93437214133326	3	444.934372	1331.78129	1.9623	0.00087307	0.092552	4.1179E-05	2.0548	0.00091425	445.2687375356963	16.587	0.11988	16.574	16.502	16.621	-0.012995	1377	25	0.7895419	0.0148022175	0.78802246	479.2663	0	8.9852295						63	6	2	NaN	NaN	NaN	0.75417	1	18429	18429		3.9007	2.3751	1	4545.9			12601	1383	7289	7438	9970	9970					0.12866763216879917
KYISKPENLKL	11	Unmodified						0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	444.934372	1331.78129	1.2354	0.00054968	-0.65017	-0.00028928	0.58524	0.0002604	445.26788878515833	16.182	0.072035	16.182	16.158	16.23	0	1374	34	0.791392	0.020354152	0.791392	480.3894		12.355316	-0.19586	-0.00053937	0.0016848	NaN	3.9007	81	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7059			12602	1383	7289	7438							0.12866763216879917
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8289747462501	2	539.828975	1077.6434	1.8627	0.0010055	-1.9015	-0.0010265	-0.038798	-2.0944E-05	539.8281779001112	21.44	0.21696	21.44	21.416	21.633	0	1212	52	0.8910048	0.03126979	0.8910048	361.44547	0	12.684937						287	10	4	NaN	NaN	NaN	7.9125E-08	1	11883	11883		138.61	74.652	1	132470			12603	2274	7290	7439	9971	9971					0.10768059688280118
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8289747462501	2	539.828975	1077.6434	1.6702	0.00090163	-1.1513	-0.00062151	0.51891	0.00028012	539.8283530577584	21.513	0.24091	21.499	21.426	21.667	-0.014006	1215	55	0.8891654	0.033114612	0.88764596	360.6993	0	13.433258						337	11	5	NaN	NaN	NaN	2.164E-05	1	11581	11581		127.69	80.645	1	145630			12604	2274	7290	7439	9972	9972					0.10768059688280118
KYITDWQNVF	10	Unmodified	_KYITDWQNVF_					0	0	0		nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6;ENST00000505526.1_1_5:271863-311637:+|nuORF	nc|ENSG00000249915|O75340-2|PDCD6	nc|ENSG00000249915|O75340-2|PDCD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3298702032499	2	657.32987	1312.64519	1.4235	0.00093573	-10.108	-0.0066444	-8.6846	-0.0057087	657.8227623885164	27.905	0.072403	27.905	27.905	27.977	0	1107	37	0.9552588	0.021988392	0.9552588	386.6339	0	8.899628						100	4	3	NaN	NaN	NaN	0.5544	1	18993	18993		17.198	3.7354	1	7948.1			12605	6102	7291	7440	9973	9973					0.0013706870620353584
KYITDWQNVF	10	Unmodified	_KYITDWQNVF_					0	0	0		nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6;ENST00000505526.1_1_5:271863-311637:+|nuORF	nc|ENSG00000249915|O75340-2|PDCD6	nc|ENSG00000249915|O75340-2|PDCD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3298702032499	2	657.32987	1312.64519	1.4844	0.00097577	-1.7842	-0.0011728	-0.29973	-0.00019702	657.3287400155392	27.012	0.33781	27.012	26.964	27.302	0	1110	73	0.95342636	0.043981552	0.95342636	385.8922	0	17.801208						659	15	6	NaN	NaN	NaN	0.00037805	1	18997	18997		92.758	66.957	1	305930			12606	6102	7291	7440	9974	9974					0.0013706870620353584
KYITDWQNVF	10	Unmodified	_KYITDWQNVF_					0	0	0		nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6;ENST00000505526.1_1_5:271863-311637:+|nuORF	nc|ENSG00000249915|O75340-2|PDCD6	nc|ENSG00000249915|O75340-2|PDCD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3298702032499	2	657.32987	1312.64519	1.4114	0.00092779	-1.2485	-0.00082064	0.163	0.00010714	657.3292936215769	27.06	0.33789	27.049	27.001	27.339	-0.010126	1110	67	0.95342636	0.040320754	0.9519069	385.8922	0	16.319519						721	15	6	NaN	NaN	NaN	0.0093647	1	18158	18158		72.076	36.78	1	297320			12607	6102	7291	7440	9975	9975					0.0013706870620353584
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.5641677807	3	437.564168	1309.67067	0.98518	0.00043108	-1.8743	-0.00082014	-0.88915	-0.00038906	437.56332831339114	20.405	0.072088	20.405	20.381	20.453	0	1497	40	0.71537006	0.024156868	0.71537006	434.31784	0	14.666199						93	4	3	NaN	NaN	NaN	0.63397	1	18937	18937		10.204	5.303	1	15096			12608	3286	7292	7441	9976	9976					0.028225432286490104
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.8426134377501	2	655.842613	1309.67067	1.0657	0.00069893	-0.82868	-0.00054348	0.23701	0.00015544	655.8432895734234	20.405	0.14421	20.405	20.381	20.525	0	1101	40	0.95892316	0.023819447	0.95892316	388.12616	0	9.640991						89	7	2	NaN	NaN	NaN	0.31897	1	18938	18938		26.96	12.535	1	14010			12609	3286	7292	7441	9977	9977					0.028225432286490104
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8426134377501	2	655.842613	1309.67067	0.85327	0.00055961	-3.1212	-0.002047	-2.2679	-0.0014874	655.8406701572558	20.598	0.21685	20.584	20.487	20.704	-0.014088	1104	37	0.9570911	0.021986008	0.95557165	387.38464	0	8.898895						129	10	2	NaN	NaN	NaN	0.64611	1	18101	18101		11.739	2.1272	1	15626			12610	3286	7292	7441	9978	9978					0.028225432286490104
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.3109491686001	2	532.310949	1062.60735	1.7629	0.00093841	-2.3737	-0.0012635	-0.61079	-0.00032513	532.3098856203285	20.573	0.16852	20.573	20.525	20.694	0	1239	76	0.87444305	0.046029747	0.87444305	354.79037	0	18.675781						294	8	3	NaN	NaN	NaN	0.02857	1	11252	11252		60.982	19.197	1	129640			12611	418	7293	7442	9979	9979					0.0785460251142922
KYITQGQLLQF	11	Unmodified	_KYITQGQLLQF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8744448824001	2	669.874445	1337.73434	1.9707	0.0013201	-7.0855	-0.0047464	-5.1149	-0.0034263	670.3707342781485	26.263	0.24134	26.263	26.119	26.36	0	1077	43	0.9735726	0.025625527	0.9735726	393.96927	0	10.36969						272	11	3	NaN	NaN	NaN	0.50669	1	19375	19375		18.233	7.8733	1	31494			12612	418	7294	7443	9980	9980					0.07897903665752892
KYITQGQLLQF	11	Unmodified	_KYITQGQLLQF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8744448824001	2	669.874445	1337.73434	2.3922	0.0016025	0.24107	0.00016149	2.6333	0.001764	669.8748172451662	25.346	0.3136	25.346	25.298	25.612	0	1071	121	0.977233	0.073239386	0.977233	395.45047	0	29.63733						815	14	6	NaN	NaN	NaN	2.5301E-07	1	19376	19376		95.291	59.056	1	878180			12613	418	7294	7443	9981	9981					0.07897903665752892
KYITQGQLLQF	11	Unmodified	_KYITQGQLLQF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8744448824001	2	669.874445	1337.73434	1.6135	0.0010808	-7.7823	-0.0052132	-6.1688	-0.0041323	670.3707811344468	26.287	0.26539	26.276	26.156	26.421	-0.011137	1074	43	0.9754029	0.025622725	0.97388345	394.70993	0	10.368591						272	12	4	NaN	NaN	NaN	0.50669	1	18511	18511		18.233	5.2307	1	27143			12614	418	7294	7443	9982	9982					0.07897903665752892
KYITQGQLLQF	11	Unmodified	_KYITQGQLLQF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8744448824001	2	669.874445	1337.73434	2.5622	0.0017163	0.35077	0.00023497	2.9129	0.0019513	669.8753524061319	25.37	0.31365	25.358	25.31	25.624	-0.012011	1071	142	0.977233	0.08608878	0.97571355	395.45047	0	34.837006						896	14	6	NaN	NaN	NaN	2.4903E-28	1	18514	18514		156.78	94.705	1	857580			12615	418	7294	7443	9983	9983					0.07897903665752892
KYITQGQLLQF	11	Unmodified						0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	669.874445	1337.73434	2.1443	0.0014364	-1.5684	-0.0010506	0.57592	0.0003858	669.8738413815844	26.07	0.072409	26.059	26.035	26.107	-0.011137	1077	34	0.9735726	0.020135403	0.9720532	393.96927		8.148071	-0.10221	0.0029287	-0.00075972	NaN	18.233	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8136.8			12616	418	7294	7443							0.07897903665752892
KYIYGEKF	8	Unmodified	_KYIYGEKF_					0	0	0		ENST00000585753.1_1_19:30412142-30412556:+|nuORF	ENST00000585753.1_1_19:30412142-30412556:+|nuORF	ENST00000585753.1_1_19:30412142-30412556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2791177239501	2	524.279118	1046.54368	1.724	0.00090387	5.1697	0.0027104	6.8937	0.0036142	524.2820150129901	13.252	0.21622	13.252	13.204	13.421	0	1548	64	0.6837494	0.039090514	0.6837494	277.47412	0	15.863434						400	10	4	NaN	NaN	NaN	0.72013	1	10492	10492		17.799	0	1	178110			12617	7696	7295	7444	9984	9984					0.022272420743320254
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-6|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2952991044	2	518.295299	1034.57605	1.8952	0.00098227	-2.2256	-0.0011535	-0.3304	-0.00017124	518.2942166104779	16.326	0.19195	16.326	16.278	16.47	0	1248	43	0.8689189	0.0257864	0.8689189	352.67123	0	10.466003						212	9	3	NaN	NaN	NaN	0.059222	1	9988	9988		42.995	14.099	1	29225			12618	2495	7296	7445	9985	9985					0.06014029477319127
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-6|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	nc|ENSG00000126214|Q07866-2|KLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2952991044	2	518.295299	1034.57605	1.7555	0.00090989	-0.66353	-0.0003439	1.092	0.00056598	518.294802144447	16.467	0.26369	16.454	16.358	16.621	-0.012995	1248	43	0.8689189	0.025783658	0.86739945	352.67123	0	10.464905						264	12	3	NaN	NaN	NaN	0.31471	1	9780	9780		17.97	0.17071	1	28372			12619	2495	7296	7445	9986	9986					0.06014029477319127
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7978715831	2	584.797872	1167.58119	1.9334	0.0011307	-0.60153	-0.00035177	1.3319	0.00077889	584.7979100563834	17.906	0.21593	17.892	17.82	18.036	-0.013786	1191	43	0.90387505	0.02573073	0.9023556	366.3097	0	10.427795						180	10	2	NaN	NaN	NaN	0.10945	1	14865	14865		34.454	12.619	1	22247			12620	3868	7297	7446	9987	9987					0.0041028854927844804
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2925594502001	2	537.292559	1072.57057	1.9219	0.0010326	-1.9925	-0.0010705	-0.070575	-3.792E-05	537.2913770776801	20.887	0.21667	20.887	20.814	21.031	0	1248	79	0.8689189	0.04789424	0.8689189	352.50714	0	19.429962						398	10	3	NaN	NaN	NaN	8.7755E-05	1	11679	11679		123.66	95.869	1	250150			12621	836	7298	7447	9988	9988					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2925594502001	2	537.292559	1072.57057	1.3708	0.00073654	-2.8248	-0.0015177	-1.4539	-0.00078119	537.2911517583191	21.079	0.40926	21.065	20.897	21.306	-0.014004	1254	70	0.8652351	0.04237485	0.86371565	351.0127	0	17.190826						764	18	5	NaN	NaN	NaN	0.0040938	1	11375	11375		104.71	67.408	1	338630			12622	836	7298	7447	9989	9989					0.0371835068551718
KYKIYWVKI	9	Unmodified	_KYKIYWVKI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.2532650154333	3	414.253265	1239.73797	1.348	0.00055843	-1.8847	-0.00078076	-0.53669	-0.00022233	414.2525713299311	21.175	0.072277	21.175	21.151	21.224	0	1392	25	0.780288	0.0148102045	0.780288	474.00943	0	8.996918						55	4	2	NaN	NaN	NaN	0.57723	1	17531	17531		6.4299	3.1255	1	4867.1			12623	3932;7968	7299	7448	9990	9990					0.12768618230256834
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8163986872501	2	557.816399	1113.61824	2.3268	0.0012979	-2.22	-0.0012383	0.10679	5.9569E-05	557.815017370765	18.532	0.21588	18.532	18.484	18.7	0	1245	79	0.87076044	0.047863185	0.87076044	353.08908	0	19.408264						448	10	4	NaN	NaN	NaN	0.064504	1	13443	13443		40.957	17.839	1	98524			12624	4157	7300	7449	9991	9991					0.06598004885699993
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8163986872501	2	557.816399	1113.61824	1.8305	0.0010211	-1.4208	-0.00079255	0.40969	0.00022853	557.8156690545499	18.842	0.31222	18.828	18.684	18.996	-0.014059	1242	73	0.87260187	0.044181406	0.8710824	353.83575	0	17.915344						673	14	3	NaN	NaN	NaN	0.0098181	1	13059	13059		92.758	52.604	1	114060			12625	4157	7300	7449	9992	9992					0.06598004885699993
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.3553566722501	2	606.355357	1210.69616	1.4707	0.00089179	-2.8329	-0.0017178	-1.3622	-0.00082597	606.3538736607485	29.739	0.21718	29.739	29.715	29.932	0	1128	85	0.9424274	0.051350534	0.9424274	381.77484	0	20.801971						308	10	3	NaN	NaN	NaN	2.5206E-11	1	16739	16739		108.71	74.257	1	76841			12626	2190	7301	7450	9993	9993					0.09924017751086467
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.3553566722501	2	606.355357	1210.69616	0.75081	0.00045526	-1.1096	-0.00067281	-0.35879	-0.00021755	606.3548637065078	29.811	0.21715	29.803	29.731	29.948	-0.0070648	1125	79	0.9442611	0.047682643	0.94274163	382.51764	0	19.316101						332	10	2	NaN	NaN	NaN	0.062807	1	16068	16068		46.588	18.092	1	74603			12627	2190	7301	7450	9994	9994					0.09924017751086467
KYLAKNSATLF	11	Unmodified	_KYLAKNSATLF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.3558879885001	2	628.355888	1254.69722	2.1521	0.0013523	-1.7313	-0.0010879	0.42079	0.0002644	628.3541536720584	18.173	0.071989	18.173	18.149	18.221	0	1104	34	0.9570911	0.020154953	0.9570911	387.56177	0	8.1614685						67	4	2	NaN	NaN	NaN	0.14916	1	17897	17897		35.056	17.858	1	5785.4			12628	5436	7302	7451	9995	9995					0.08006232119987544
KYLAKNSATLF	11	Unmodified						0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	628.355888	1254.69722	2.7481	0.0017268	-3.1812	-0.001999	-0.4331	-0.00027214	628.8564596868773	18.386	0.096075	18.372	18.348	18.444	-0.01395	1107	25	0.9552588	0.014657319	0.9537394	386.81982		5.9353027	0.09953	-0.0013158	-0.0016759	NaN	35.056	50	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2651.1			12629	5436	7302	7451							0.08006232119987544
KYLAKTGETF	10	Unmodified	_KYLAKTGETF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3136888228	2	579.313689	1156.61282	1.5106	0.00087512	-1.5146	-0.00087742	-0.0039589	-2.2934E-06	579.3120380117454	14.765	0.12005	14.765	14.741	14.861	0	1185	34	0.90755045	0.020211518	0.90755045	367.83997	0	8.191956						110	6	3	NaN	NaN	NaN	0.28676	1	15042	15042		28.296	11.711	1	9555.8			12630	3714	7303	7452	9996	9996					0.040782813032365084
KYLATLETL	9	Unmodified	_KYLATLETL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.3053324744501	2	526.305332	1050.59611	1.661	0.00087418	-1.3441	-0.00070742	0.31685	0.00016676	526.3049662560433	23.392	0.1448	23.379	23.331	23.476	-0.013296	1266	49	0.85786515	0.02948296	0.8563457	348.11508	0	11.963928						114	7	3	NaN	NaN	NaN	0.070055	1	10443	10443		40.154	26.691	1	14018			12631	4134	7304	7453	9997	9997					0.07283780417287744
KYLATLETL	9	Unmodified						0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.305332	1050.59611	1.7626	0.00092766	-1.6827	-0.0008856	0.079905	4.2055E-05	526.8056185515649	23.345	0.048262	23.345	23.32	23.369	0	1263	49	0.85970795	0.02948296	0.85970795	348.86288		11.963928	-0.017218	-0.0001732	0.0016811	NaN	40.154	78	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10556			12632	4134	7304	7453							0.07283780417287744
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.56975853943334	3	470.569759	1408.68745	1.3783	0.00064857	-2.6114	-0.0012289	-1.2332	-0.00058029	470.5685179803739	22.525	0.12052	22.525	22.477	22.597	0	1398	79	0.77658504	0.048112452	0.77658504	471.13724	0	29.188782						204	6	4	NaN	NaN	NaN	0.0071373	1	20134	20134		49.26	35.826	1	33147			12633	4641	7305	7454	9998	9998					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3509995758501	2	705.351	1408.68745	1.4008	0.00098807	-0.40429	-0.00028517	0.99654	0.00070291	705.3510886726118	22.525	0.14465	22.525	22.477	22.621	0	1038	88	0.997351	0.053038478	0.997351	403.38358	0	21.45169						309	7	4	NaN	NaN	NaN	2.1832E-22	1	20135	20135		145.18	98.596	1	61921			12634	4641	7305	7454	9999	9999					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3509995758501	2	705.351	1408.68745	1.0484	0.00073947	-1.7559	-0.0012385	-0.70752	-0.00049905	705.349839978704	22.573	0.19299	22.559	22.487	22.68	-0.01354	1041	76	0.9955231	0.045717835	0.99400365	402.64426	0	18.490814						365	9	5	NaN	NaN	NaN	9.891299999999999E-23	1	19183	19183		150.06	103.47	1	65194			12635	4641	7305	7454	10000	10000					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.56975853943334	3	470.569759	1408.68745	0.18959	8.9215E-05	-0.41826	-0.00019682	-0.22867	-0.00010761	470.56999890454495	22.573	0.14472	22.559	22.511	22.655	-0.01354	1398	94	0.77658504	0.05736792	0.7750656	471.13724	0	34.803894						252	7	4	NaN	NaN	NaN	0.036982	1	19184	19184		40.435	22.857	1	32465			12636	4641	7305	7454	10001	10001					-0.0005500067604771175
KYLDEFLLNKI	11	Unmodified	_KYLDEFLLNKI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.934260691	3	465.934261	1394.78095	0.99211	0.00046226	-2.4187	-0.0011269	-1.4266	-0.00066469	465.9325765943084	26.77	0.072865	26.77	26.746	26.819	0	1395	31	0.7784366	0.018512845	0.7784366	472.30627	0	11.232391						54	4	2	NaN	NaN	NaN	0.77082	1	20019	20019		1.8502	0.48058	1	4723.4			12637	1153	7306	7455	10002	10002					0.09935343497045324
KYLDEFLLNKI	11	Unmodified	_KYLDEFLLNKI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.3977528032001	2	698.397753	1394.78095	1.0151	0.00070894	-1.4836	-0.0010362	-0.46854	-0.00032723	698.397149155525	26.77	0.12114	26.77	26.722	26.843	0	1011	40	1.0137935	0.023740053	1.0137935	410.07358	0	9.602722						119	6	3	NaN	NaN	NaN	5.2069E-05	1	20020	20020		99.85	58.893	1	15515			12638	1153	7306	7455	10003	10003					0.09935343497045324
KYLDEFLLNKI	11	Unmodified	_KYLDEFLLNKI_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3977528032001	2	698.397753	1394.78095	0.7489	0.00052303	-1.7312	-0.0012091	-0.98229	-0.00068603	698.3969777657609	26.915	0.21725	26.904	26.832	27.049	-0.010645	1011	37	1.0137935	0.021912694	1.012274	410.07358	0	8.863586						161	10	3	NaN	NaN	NaN	0.03273	1	19082	19082		75.138	16.369	1	12555			12639	1153	7306	7455	10004	10004					0.09935343497045324
KYLDELGFTVF	11	Unmodified	_KYLDELGFTVF_					0	0	0		ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3477286054	2	666.347729	1330.6809	0.79717	0.00053119	-2.5287	-0.001685	-1.7315	-0.0011538	666.3460126065152	31.284	0.12064	31.284	31.235	31.356	0	1071	55	0.977233	0.03295064	0.977233	395.47192	0	13.334625						101	6	2	NaN	NaN	NaN	0.63747	1	19267	19267		11.561	3.9737	1	9879.3			12640	992	7307	7456	10005	10005					0.028791061632318815
KYLDELGFTVF	11	Unmodified	_KYLDELGFTVF_					0	0	0		ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	ENSG00000086696|ENST00000199936|HSD17B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3477286054	2	666.347729	1330.6809	1.3386	0.00089198	-2.704	-0.0018018	-1.3654	-0.00090985	666.3448135448251	31.307	0.096529	31.302	31.253	31.35	-0.0050716	1068	43	0.97906286	0.025619924	0.9775434	396.21246	0	10.368011						109	5	3	NaN	NaN	NaN	0.60584	1	18408	18408		13.638	5.3602	1	8260.7			12641	992	7307	7456	10006	10006					0.028791061632318815
KYLDGLDVCRF	11	Unmodified	_KYLDGLDVCRF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8370051311	2	664.837005	1327.65946	1.6506	0.0010974	-2.8661	-0.0019055	-1.2155	-0.00080812	665.3369041307258	24.96	0.072418	24.96	24.912	24.985	0	1086	34	0.9680805	0.020139694	0.9680805	391.77722	0	8.150452						59	4	2	NaN	NaN	NaN	0.36851	1	19221	19221		23.177	5.9782	1	7189.1			12642	2026	7308	7457	10007	10007					0.00873397862847014
KYLDGLDVCRF	11	Unmodified	_KYLDGLDVCRF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.5604289096	3	443.560429	1327.65946	1.1841	0.00052523	-1.7702	-0.00078517	-0.58604	-0.00025994	443.89372041342926	24.936	0.072409	24.936	24.888	24.96	0	1413	34	0.7673241	0.020380676	0.7673241	465.79456	0	12.371796						55	4	2	NaN	NaN	NaN	0.76654	1	19222	19222		0.88464	0.16852	1	3865			12643	2026	7308	7457	10008	10008					0.00873397862847014
KYLDGLDVCRF	11	Unmodified	_KYLDGLDVCRF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.8370051311	2	664.837005	1327.65946	2.0681	0.001375	-5.3543	-0.0035598	-3.2862	-0.0021848	664.8359563587318	24.647	0.24112	24.634	24.514	24.755	-0.012394	1086	37	0.9680805	0.021971762	0.9665611	391.77722	0	8.891876						76	11	2	NaN	NaN	NaN	0.76937	1	18362	18362		2.1026	0	1	4694.3			12644	2026	7308	7457	10009	10009					0.00873397862847014
KYLDIPKML	9	Unmodified	_KYLDIPKML_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8253778123001	2	560.825378	1119.6362	1.7373	0.00097431	-0.42231	-0.00023684	1.315	0.00073747	560.825150252362	23.851	0.14454	23.851	23.754	23.899	0	1212	79	0.8910048	0.04781151	0.8910048	361.27432	0	19.386047						268	7	3	NaN	NaN	NaN	0.032021	1	13670	13670		56.466	23.687	1	41285			12645	786;6097	7309	7458	10010	10010					0.08117003816209944
KYLDIPKML	9	Unmodified	_KYLDIPKML_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF	ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8253778123001	2	560.825378	1119.6362	1.5324	0.00085939	-1.9958	-0.0011193	-0.46348	-0.00025993	560.824632305864	23.947	0.19293	23.934	23.861	24.054	-0.013048	1209	73	0.892844	0.044128895	0.8913246	362.02005	0	17.892883						350	9	3	NaN	NaN	NaN	0.14227	1	13270	13270		29.706	12.508	1	44142			12646	786;6097	7309	7458	10011	10011					0.08117003816209944
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.27710635125	2	524.277106	1046.53966	1.9988	0.0010479	-4.6474	-0.0024365	-2.6486	-0.0013886	524.2749817422737	18.194	0.096003	18.18	18.156	18.252	-0.01395	1269	64	0.8560222	0.038715184	0.85450274	347.38464	0	15.71109						220	5	4	NaN	NaN	NaN	0.026469	1	10280	10280		63.731	39.33	1	51636			12647	5691	7310	7459	10012	10012					0.01825152580613576
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.90782303983343	3	439.907823	1316.70164	1.0568	0.00046488	-1.2642	-0.00055613	-0.20743	-9.1251E-05	439.9068421160625	24.671	0.16887	24.671	24.647	24.816	0	1479	106	0.72651637	0.06493205	0.72651637	441.06046	0	39.419525						262	8	3	NaN	NaN	NaN	0.31827	1	19065	19065		26.989	4.1005	1	55007			12648	1202	7311	7460	10013	10013					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.90782303983343	3	439.907823	1316.70164	0.95776	0.00042133	-0.95083	-0.00041828	0.0069345	3.0506E-06	439.90757325995696	24.671	0.1206	24.671	24.647	24.767	0	1338	121	0.81357855	0.07401121	0.81357855	493.915	0	44.931396						181	6	4	NaN	NaN	NaN	0.46425	1	19066	19066		20.936	10.075	1	24724			12649	1202	7311	7460	10014	10014					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3580963264502	2	659.358096	1316.70164	1.565	0.0010319	-0.90975	-0.00059985	0.65525	0.00043204	659.3570416262268	24.671	0.26538	24.671	24.623	24.888	0	1080	82	0.9717421	0.04943925	0.9717421	393.29276	0	20.009521						500	12	4	NaN	NaN	NaN	0.011832	1	19067	19067		88.524	30.126	1	189210			12650	1202	7311	7460	10015	10015					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.90782303983343	3	439.907823	1316.70164	1.0044	0.00044182	-1.8499	-0.0008138	-0.84557	-0.00037197	439.90693813912134	24.743	0.24127	24.731	24.682	24.924	-0.012394	1476	52	0.72837335	0.03156233	0.7268539	442.18784	0	19.161163						351	11	4	NaN	NaN	NaN	0.25505	1	18218	18218		30.798	10.111	1	47671			12651	1202	7311	7460	10016	10016					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3580963264502	2	659.358096	1316.70164	1.627	0.0010728	-1.8782	-0.0012384	-0.25117	-0.00016561	659.3568723733698	24.767	0.28953	24.755	24.682	24.972	-0.012392	1080	82	0.9717421	0.049444556	0.97022265	393.29276	0	20.011688						663	13	5	NaN	NaN	NaN	0.023759	1	18219	18219		80.24	46.542	1	171970			12652	1202	7311	7460	10017	10017					0.055956965429231786
KYLDYVEKY	9	Unmodified	_KYLDYVEKY_					0	0	0		nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8135216473	2	610.813522	1219.61249	1.2844	0.00078454	-0.49997	-0.00030539	0.78444	0.00047915	610.8130186171015	19.06	0.071959	19.06	19.036	19.108	0	1140	46	0.93509084	0.027525544	0.93509084	378.77158	0	11.149597						90	4	3	NaN	NaN	NaN	0.42817	1	16972	16972		12.57	0.52101	1	9503.3			12653	5720	7312	7461	10018	10018					0.011468615833791773
KYLDYVEKY	9	Unmodified	_KYLDYVEKY_					0	0	0		nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8135216473	2	610.813522	1219.61249	1.0825	0.00066121	-0.98916	-0.00060419	0.093342	5.7015E-05	610.813098635755	19.13	0.16826	19.116	19.092	19.26	-0.014141	1140	46	0.93509084	0.027522564	0.9335714	378.77158	0	11.148407						160	8	3	NaN	NaN	NaN	0.11323	1	16288	16288		33.907	13.459	1	13904			12654	5720	7312	7461	10019	10019					0.011468615833791773
KYLEDMKTYF	10	Unmodified	_KYLEDMKTYF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.5530514344	3	446.553051	1336.63732	1.2623	0.00056367	-3.8126	-0.0017025	-2.5504	-0.0011389	446.8858171249265	22.163	0.048277	22.163	22.139	22.187	0	1485	52	0.72280174	0.03157264	0.72280174	438.7375	0	19.16446						59	3	2	NaN	NaN	NaN	0.63162	1	19355	19355		12.73	7.5643	1	5176.1			12655	6080	7313	7462	10020	10020					-0.017528266055478525
KYLEDMKTYF	10	Unmodified	_KYLEDMKTYF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3259389183	2	669.325939	1336.63732	1.1688	0.00078231	-3.1035	-0.0020773	-1.9347	-0.001295	669.3219052540774	22.284	0.19277	22.27	22.197	22.39	-0.013731	1092	70	0.9644182	0.042142153	0.96289873	390.26807	0	17.053528						242	9	3	NaN	NaN	NaN	0.085254	1	18490	18490		55.775	34.839	1	26435			12656	6080	7313	7462	10021	10021					-0.017528266055478525
KYLEDMKTYF	10	Oxidation (M)	_KYLEDM(Oxidation (M))KTYF_		KYLEDM(1)KTYF		KYLEDM(60)KTYF	0	0	1		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.32339622935	2	677.323396	1352.63224	1.9897	0.0013477	-1.1841	-0.00080205	0.8056	0.00054565	677.3226983808368	18.388	0.12003	18.388	18.34	18.46	0	1101	43	0.95892316	0.025644839	0.95892316	387.99747	0	10.376343						132	6	3	NaN	NaN	NaN	0.029222	1	19574	19574		59.88	27.428	1	11085			12657	6080	7313	7463	10022	10022		615			-0.02997130468179421
KYLEDMKTYF	10	Oxidation (M)	_KYLEDM(Oxidation (M))KTYF_		KYLEDM(1)KTYF		KYLEDM(53)KTYF	0	0	1		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.32339622935	2	677.323396	1352.63224	1.7364	0.0011761	-0.74607	-0.00050533	0.99035	0.00067078	677.3234770440472	18.458	0.168	18.444	18.396	18.564	-0.01395	1098	49	0.960755	0.029308379	0.9592356	388.73865	0	11.858673						176	8	4	NaN	NaN	NaN	0.04894	1	18697	18697		52.995	22.959	1	15232			12658	6080	7313	7463	10023	10023		615			-0.02997130468179421
KYLEERAMRQF	11	Unmodified	_KYLEERAMRQF_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.9222492309	3	490.922249	1469.74492	2.0372	0.0010001	-2.1568	-0.0010588	-0.11962	-5.8726E-05	490.92121612965684	16.326	0.19197	16.326	16.254	16.446	0	1371	49	0.79324204	0.029597998	0.79324204	481.04855	0	17.94925						422	9	5	NaN	NaN	NaN	0.61966	1	20467	20467		12.73	8.8297	1	99141			12659	1936	7314	7464	10024	10024					0.028835630485218644
KYLEERAMRQF	11	Unmodified	_KYLEERAMRQF_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.9222492309	3	490.922249	1469.74492	1.3044	0.00064036	-0.83508	-0.00040996	0.46931	0.0002304	490.92245531607045	16.946	0.14388	16.933	16.885	17.029	-0.013294	1371	82	0.79324204	0.04991156	0.7917226	481.04855	0	30.268036						176	7	2	NaN	NaN	NaN	0.69263	1	19478	19478		7.9408	5.1518	1	40364			12660	1936	7314	7464	10025	10025					0.028835630485218644
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.91738116199997	3	474.917381	1421.73031	1.5386	0.0007307	-1.4705	-0.00069836	0.06809	3.2337E-05	474.91624478536414	16.566	0.14392	16.566	16.518	16.662	0	1362	40	0.79879075	0.024041891	0.79879075	484.56583	0	14.584381						147	7	4	NaN	NaN	NaN	0.020247	1	20232	20232		62.136	45.864	1	16762			12661	4444	7315	7465	10026	10026					0.036318141720357744
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.91738116199997	3	474.917381	1421.73031	1.7241	0.00081878	-3.6544	-0.0017355	-1.9304	-0.00091676	475.2486214234817	16.946	0.071915	16.933	16.933	17.005	-0.013294	1362	34	0.79879075	0.02034092	0.7972713	484.56583	0	12.339294						48	4	2	NaN	NaN	NaN	0.66679	1	19276	19276		9.6366	7.7465	1	3546			12662	4444	7315	7465	10027	10027					0.036318141720357744
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.91738116199997	3	474.917381	1421.73031	1.099	0.00052192	0.39936	0.00018966	1.4983	0.00071158	474.9173280450078	16.85	0.14375	16.837	16.741	16.885	-0.013294	1362	40	0.79879075	0.024036646	0.7972713	484.5658	0	14.581238						100	7	2	NaN	NaN	NaN	0.04842	1	19277	19277		50.238	40.034	1	12409			12663	4444	7315	7465	10028	10028					0.036318141720357744
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7796788299501	2	548.779679	1095.5448	1.7237	0.00094592	-1.0494	-0.0005759	0.67425	0.00037002	548.7791530158141	17.642	0.16783	17.628	17.58	17.748	-0.013786	1245	52	0.87076044	0.031303644	0.869241	353.16028	0	12.696045						222	8	4	NaN	NaN	NaN	0.21451	1	12321	12321		24.4	2.6292	1	28182			12664	5843	7316	7466	10029	10029					0.0008541165257156536
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3369669538502	2	563.336967	1124.65938	2.0987	0.0011823	-1.9597	-0.001104	0.13897	7.8285E-05	563.3358276818494	21.898	0.19279	21.898	21.85	22.043	0	1167	73	0.91857195	0.04405749	0.91857195	372.4317	0	17.862976						354	9	4	NaN	NaN	NaN	0.041983	1	13880	13880		50.315	21.42	1	67415			12665	1984	7317	7467	10030	10030					0.10203765925189145
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.3369669538502	2	563.336967	1124.65938	1.1796	0.00066451	-1.3603	-0.00076632	-0.18072	-0.00010181	563.3359267173989	22.139	0.21684	22.125	21.981	22.197	-0.013731	1164	103	0.9204082	0.06242156	0.91888875	373.17618	0	25.308594						378	10	3	NaN	NaN	NaN	0.059222	1	13453	13453		42.995	25.214	1	51289			12666	1984	7317	7467	10031	10031					0.10203765925189145
KYLEKYYNL	9	Unmodified	_KYLEKYYNL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3293388870001	2	617.329339	1232.64412	1.6123	0.0009953	-0.68582	-0.00042338	0.92645	0.00057193	617.3291831245633	18.772	0.14401	18.772	18.748	18.892	0	1128	52	0.9424274	0.031175435	0.9424274	381.6982	0	12.626556						177	7	3	NaN	NaN	NaN	0.022117	1	17349	17349		87.778	44.783	1	22391			12667	5645	7318	7468	10032	10032					0.037108543373278735
KYLEKYYNL	9	Unmodified	_KYLEKYYNL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3293388870001	2	617.329339	1232.64412	1.0717	0.00066158	-1.0375	-0.00064049	0.034168	2.1093E-05	617.3294225874856	18.962	0.19215	18.948	18.876	19.068	-0.014059	1125	43	0.9442611	0.025672436	0.94274163	382.44086	0	10.397766						215	9	3	NaN	NaN	NaN	0.11558	1	16622	16622		37.231	10.184	1	22446			12668	5645	7318	7468	10033	10033					0.037108543373278735
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2913678194501	2	548.291368	1094.56818	1.6215	0.00088904	-2.1302	-0.001168	-0.50877	-0.00027895	548.290532804117	27.808	0.60336	27.808	27.374	27.977	0	1218	67	0.8873258	0.040482104	0.8873258	359.88278	0	16.418793						639	26	4	NaN	NaN	NaN	0.21451	1	12615	12615		24.4	7.9836	1	136770			12669	1635	7319	7469	10034	10034					0.02468134165542324
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2913678194501	2	548.291368	1094.56818	1.0574	0.00057978	-1.8565	-0.0010179	-0.79906	-0.00043812	548.2902521869064	27.687	0.072374	27.677	27.629	27.702	-0.009552	1218	55	0.8873258	0.033121705	0.8858064	359.88278	0	13.433563						95	3	2	NaN	NaN	NaN	0.13999	1	12285	12285		30.035	6.9178	1	20155			12670	1635	7319	7469	10035	10035					0.02468134165542324
KYLELCVDL	9	Unmodified	_KYLELCVDL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2913678194501	2	548.291368	1094.56818	1.2465	0.00068344	-0.83453	-0.00045757	0.41195	0.00022587	548.290783925076	27.832	0.24134	27.822	27.726	27.967	-0.009552	1218	70	0.8873258	0.042324543	0.8858064	359.88278	0	17.166016						322	11	2	NaN	NaN	NaN	0.13999	1	12286	12286		30.035	6.9178	1	112110			12671	1635	7319	7469	10036	10036					0.02468134165542324
KYLELCVDL	9	Unmodified						0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.291368	1094.56818	1.5014	0.00082319	-2.841	-0.0015577	-1.3396	-0.00073448	548.2900183818947	28.026	0.024122	28.026	28.001	28.026	0	1221	52	0.885486	0.03128332	0.885486	359.1366		12.687927	0.1017	-0.0020161	-0.00016018	NaN	30.035	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8032.2			12672	1635	7319	7469							0.02468134165542324
KYLEMIYSM	9	Oxidation (M)	_KYLEMIYSM(Oxidation (M))_		KYLEMIYSM(1)		KYLEM(-51)IYSM(51)	0	0	1		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.2826855075999	2	597.282686	1192.55082	1.5558	0.00092927	-3.6644	-0.0021887	-2.1086	-0.0012594	597.2812689424734	22.308	0.19294	22.308	22.236	22.429	0	1161	73	0.9222442	0.04408127	0.9222442	373.66275	0	17.86026						225	9	3	NaN	NaN	NaN	0.032689	1	16215	16215		55.592	28.295	2	80501			12673	5923	7320	7470	10037	10037		604;605			-0.03775529431800351
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(94)IYSM(94)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.28014281865	2	605.280143	1208.54573	1.5738	0.00095257	-1.5044	-0.00091058	0.069366	4.1986E-05	605.2795529882222	19.348	0.19195	19.348	19.3	19.492	0	1176	67	0.9130621	0.04042524	0.9130621	369.88644	0	16.376526						464	9	5	NaN	NaN	NaN	0.0092442	1	16686	16686		93.929	59.49	1	100080			12674	5923	7320	7471	10038	10038		604;605			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(75)IYSM(75)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.28014281865	2	605.280143	1208.54573	1.2432	0.0007525	-1.2845	-0.00077748	-0.041257	-2.4972E-05	605.2802343108181	19.37	0.16822	19.356	19.284	19.452	-0.014141	1176	70	0.9130621	0.042265058	0.91154265	369.88644	0	17.121826						457	8	5	NaN	NaN	NaN	0.017558	1	16015	16015		75.089	48.974	1	97211			12675	5923	7320	7471	10039	10039		604;605			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)						0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	605.280143	1208.54573	1.6532	0.0010006	-3.6162	-0.0021888	-1.963	-0.0011882	605.7794736445819	19.539	0.072241	19.524	19.5	19.573	-0.014143	1182	43	0.9093879	0.025722384	0.90786844	368.39798		10.420288	0.08817	-0.0023645	-0.0025968	NaN	93.929	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3860.9			12676	5923	7320	7471				604;605			-0.05019833294386444
KYLEMIYSM	9	Unmodified	_KYLEMIYSM_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.28522819655	2	589.285228	1176.5559	2.0575	0.0012124	-0.52472	-0.00030921	1.5328	0.00090323	589.285852982763	25.805	0.28963	25.793	25.745	26.034	-0.0116	1170	73	0.91673553	0.044090807	0.9152161	371.48853	0	17.866913						576	13	4	NaN	NaN	NaN	0.032689	1	15124	15124		55.592	27.803	1	125000			12677	5923	7320	7472	10040	10040					-0.025312255691687824
KYLENYYDL	9	Unmodified	_KYLENYYDL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.7953288941501	2	610.795329	1219.5761	1.5289	0.00093387	3.2353	0.0019761	4.7643	0.00291	610.7942983970138	22.766	0.21708	22.766	22.718	22.935	0	1155	85	0.92591566	0.051417053	0.92591566	375.05518	0	20.82721						341	10	3	NaN	NaN	NaN	0.01966	1	16968	16968		72.428	43.533	1	79506			12678	3702	7321	7473	10041	10041					-0.024900153133330605
KYLENYYDL	9	Unmodified	_KYLENYYDL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.7953288941501	2	610.795329	1219.5761	1.0691	0.00065298	1.7079	0.0010432	2.7769	0.0016961	610.7943933667566	22.79	0.31339	22.776	22.68	22.993	-0.01354	1152	85	0.92775106	0.051405966	0.9262317	375.79865	0	20.822723						368	14	3	NaN	NaN	NaN	0.024359	1	16284	16284		66.481	27.022	1	89180			12679	3702	7321	7473	10042	10042					-0.024900153133330605
KYLERIQQ	8	Unmodified	_KYLERIQQ_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3061981417001	2	539.306198	1076.59784	1.6138	0.00087033	-2.3025	-0.0012417	-0.68866	-0.0003714	539.3047230692372	15.15	0.16817	15.15	15.101	15.27	0	1263	55	0.85970795	0.033171892	0.85970795	348.75388	0	13.456696						133	8	2	NaN	NaN	NaN	0.7718	1	11845	11845		13.003	0	1	16731	+		12680	8384	7322	7474	10043	10043					0.06260834225895451
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.3000501313	2	559.30005	1116.58555	1.617	0.00090437	-1.0738	-0.00060057	0.54319	0.0003038	559.2995270952583	29.474	0.14483	29.474	29.425	29.57	0	1206	52	0.894683	0.031259656	0.894683	362.77777	0	12.675232						219	7	3	NaN	NaN	NaN	0.017076	1	13542	13542		75.698	31.06	1	163470			12681	2424	7323	7475	10044	10044					0.03191797762860915
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.3000501313	2	559.30005	1116.58555	1.3696	0.00076602	-0.35409	-0.00019804	1.0155	0.00056798	559.2995608482961	29.521	0.24131	29.514	29.417	29.659	-0.0070648	1203	55	0.8965218	0.033093095	0.89500237	363.52338	0	13.41864						300	11	3	NaN	NaN	NaN	0.097143	1	13147	13147		36.235	8.446	1	168440			12682	2424	7323	7475	10045	10045					0.03191797762860915
KYLGIINMF	9	Unmodified	_KYLGIINMF_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.80444540495	2	549.804445	1097.59434	1.2833	0.00070558	-2.5506	-0.0014024	-1.2673	-0.00069677	549.8036117245977	29.618	0.14478	29.618	29.594	29.739	0	1209	82	0.892844	0.049653053	0.892844	362.10846	0	20.137665						237	7	4	NaN	NaN	NaN	0.29681	1	12758	12758		19.118	1.3193	1	28213			12683	1834	7324	7476	10046	10046					0.049444481276623264
KYLGIINMF	9	Oxidation (M)	_KYLGIINM(Oxidation (M))F_		KYLGIINM(1)F		KYLGIINM(58)F	0	0	1		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.801902716	2	557.801903	1113.58925	1.9038	0.001062	-2.891	-0.0016126	-0.98719	-0.00055065	557.8000961426972	25.612	0.12062	25.6	25.528	25.648	-0.0116	1197	94	0.9001988	0.05702144	0.8986794	365.0263	0	23.121918						177	6	3	NaN	NaN	NaN	0.030669	1	13054	13054		58.235	46.187	1	37017			12684	1834	7324	7477	10047	10047		208			0.037001442650534955
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.81332468205	2	531.813325	1061.6121	0.71741	0.00038153	-4.1015	-0.0021812	-3.384	-0.0017997	531.81137863885	27.253	0.24132	27.242	27.194	27.436	-0.010126	1251	94	0.8670771	0.05707693	0.8655577	351.806	0	23.158264						415	11	4	NaN	NaN	NaN	0.14787	1	10941	10941		28.896	7.1245	1	69715			12685	5737	7325	7478	10048	10048					0.08375486654176711
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.8817197396666	3	378.88172	1133.62333	1.7327	0.00065649	-2.0951	-0.00079379	-0.36238	-0.0001373	378.88038435164594	19.684	0.072006	19.684	19.66	19.732	0	1464	43	0.73579943	0.02598828	0.73579943	447.44324	0	15.803619						82	4	3	NaN	NaN	NaN	0.47587	1	14232	14232		9.6116	5.3627	1	6105.5			12686	851	7326	7479	10049	10049					0.06186308748306146
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8189413762	2	567.818941	1133.62333	2.1753	0.0012352	-2.165	-0.0012293	0.01033	5.8654E-06	567.8178888007853	19.684	0.19213	19.684	19.636	19.828	0	1188	64	0.90571284	0.038602352	0.90571284	367.18286	0	15.649719						355	9	5	NaN	NaN	NaN	0.018156	1	14233	14233		74.332	48.217	1	105410			12687	851	7326	7479	10050	10050					0.06186308748306146
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.8189413762	2	567.818941	1133.62333	1.478	0.00083926	-1.2973	-0.00073664	0.18073	0.00010262	567.8182171376734	19.9	0.3851	19.885	19.789	20.174	-0.014141	1188	55	0.90571284	0.033082366	0.9041934	367.18286	0	13.411865						461	17	4	NaN	NaN	NaN	0.030391	1	13777	13777		58.599	30.81	1	98327			12688	851	7326	7479	10051	10051					0.06186308748306146
KYLGQLTSI	9	Unmodified	_KYLGQLTSI_					0	0	0		ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;nc|ENSG00000136280|Q9BSQ5-4|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.79767461784996	2	511.797675	1021.5808	1.2389	0.00063408	-8.732	-0.004469	-7.493	-0.0038349	511.7921122854152	21.681	0.12041	21.667	21.619	21.74	-0.013895	1278	76	0.85049206	0.04605961	0.8489726	345.24994	0	18.69751						148	6	3	NaN	NaN	NaN	0.12328	1	9252	9252		32.453	0.89171	1	15422			12689	3011	7327	7480	10052	10052					0.07086913620082669
KYLGQLTSI	9	Unmodified						0	0	0		ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;nc|ENSG00000136280|Q9BSQ5-4|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	ENST00000478582.5_1_7:45077926-45109516:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.797675	1021.5808	1.8979	0.00097135	-7.7682	-0.0039757	-5.8702	-0.0030044	511.7938145163166	21.633	0.09635	21.633	21.561	21.657	0	1278	64	0.85049206	0.038694263	0.85049206	345.24994		15.707611	-0.017106	0.00039887	0.00075972	NaN	32.453	89	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7802.8			12690	3011	7327	7480							0.07086913620082669
KYLHPPTHL	9	Unmodified	_KYLHPPTHL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.20994783526663	3	369.209948	1104.60801	1.3631	0.00050328	-2.3502	-0.00086772	-0.9871	-0.00036445	369.20839199176294	14.861	0.096083	14.861	14.765	14.861	0	1434	31	0.75435036	0.018540919	0.75435036	458.86865	0	11.278381						75	5	2	NaN	NaN	NaN	0.074859	1	13052	13052		28.495	7.982	1	9370.3			12691	3239	7328	7481	10053	10053					0.059894419511238084
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8264320573	2	553.826432	1105.63831	1.186	0.00065683	-1.6029	-0.0008877	-0.41688	-0.00023088	553.8257874566514	26.915	0.16886	26.915	26.867	27.036	0	1221	55	0.885486	0.033114612	0.885486	359.0919	0	13.428986						308	8	4	NaN	NaN	NaN	0.024359	1	13103	13103		87.021	25.75	1	118700			12692	1145	7329	7482	10054	10054					0.08971755825655237
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8264320573	2	553.826432	1105.63831	1.2882	0.00071343	-1.0461	-0.00057933	0.24213	0.0001341	553.825490291317	26.939	0.21725	26.928	26.904	27.121	-0.010645	1221	58	0.885486	0.034956157	0.88396657	359.0919	0	14.175812						347	10	4	NaN	NaN	NaN	0.026443	1	12741	12741		73.133	25.997	1	122220			12693	1145	7329	7482	10055	10055					0.08971755825655237
KYLKAVEEL	9	Unmodified	_KYLKAVEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8186070252	2	546.818607	1091.62266	1.8183	0.00099428	-1.7451	-0.00095426	0.073185	4.0019E-05	546.8174045543997	17.717	0.14379	17.717	17.669	17.813	0	1221	49	0.885486	0.029435158	0.885486	359.14865	0	11.938751						151	7	2	NaN	NaN	NaN	0.04743	1	12479	12479		48.002	19.107	1	30017			12694	594;13711	7330	7483	10056	10056					0.08051469308588821
KYLKAVEEL	9	Unmodified	_KYLKAVEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.8186070252	2	546.818607	1091.62266	1.9658	0.0010749	-2.3905	-0.0013071	-0.42465	-0.00023221	546.8168263718586	18.05	0.26399	18.036	17.892	18.156	-0.013786	1218	79	0.8873258	0.04783213	0.8858064	359.89487	0	19.400482						363	12	3	NaN	NaN	NaN	0.052553	1	12163	12163		45.827	17.331	1	38522			12695	594;13711	7330	7483	10057	10057					0.08051469308588821
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.3316846107001	2	560.331685	1118.64882	1.5279	0.00085613	-0.48369	-0.00027103	1.0442	0.0005851	560.3318560685117	23.995	0.12061	23.995	23.947	24.068	0	1197	46	0.9001988	0.027573109	0.9001988	365.0061	0	11.180145						176	6	4	NaN	NaN	NaN	0.042816	1	13632	13632		49.961	24.16	1	24331			12696	997	7331	7484	10058	10058					0.09423783270767672
KYLLHSLVF	9	Unmodified						0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.331685	1118.64882	1.5728	0.00088128	-6.5465	-0.0036682	-4.9738	-0.002787	560.3306526350678	24.26	0.048279	24.248	24.248	24.296	-0.012749	1161	31	0.9222442	0.018359244	0.92072475	373.94495		7.4441833	0.1262	-0.0058591	0.010263	NaN	49.961	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7118.9			12697	997	7331	7484							0.09423783270767672
KYLLSSIQW	9	Unmodified	_KYLLSSIQW_					0	0	0		ENSG00000116922|ENST00000486637|C1orf109;ENST00000464178.1_1_1:38148797-38151999:-|nuORF;ENST00000609516.1_1_1:38148823-38149105:-|nuORF	ENSG00000116922|ENST00000486637|C1orf109	ENSG00000116922|ENST00000486637|C1orf109	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3187742007001	2	569.318774	1136.623	1.5687	0.00089307	-2.5361	-0.0014439	-0.96747	-0.0005508	569.3179400353478	27.157	0.16888	27.157	27.109	27.277	0	1179	73	0.9112251	0.044071734	0.9112251	369.40585	0	17.866455						283	8	5	NaN	NaN	NaN	0.030696	1	14350	14350		58.2	13.035	1	48255			12698	2118	7332	7485	10059	10059					0.06014889028483594
KYLLSSIQW	9	Unmodified	_KYLLSSIQW_					0	0	0		ENSG00000116922|ENST00000486637|C1orf109;ENST00000464178.1_1_1:38148797-38151999:-|nuORF;ENST00000609516.1_1_1:38148823-38149105:-|nuORF	ENSG00000116922|ENST00000486637|C1orf109	ENSG00000116922|ENST00000486637|C1orf109	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3187742007001	2	569.318774	1136.623	0.92658	0.00052752	-1.0314	-0.00058717	-0.10478	-5.9656E-05	569.3180575042722	27.204	0.16893	27.194	27.146	27.315	-0.010126	1179	55	0.9112251	0.03307879	0.90970564	369.40585	0	13.409973						252	8	4	NaN	NaN	NaN	0.032689	1	13880	13880		55.592	13.274	1	43473			12699	2118	7332	7485	10060	10060					0.06014889028483594
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.815867371	2	547.815867	1093.61718	1.8786	0.0010291	-1.4494	-0.00079401	0.42918	0.00023511	547.8157298099127	26.167	0.072405	26.167	26.143	26.215	0	1209	55	0.892844	0.0331074	0.892844	362.1248	0	13.427887						195	4	5	NaN	NaN	NaN	0.013959	1	12577	12577		80.901	35.736	1	32936			12700	2188	7333	7486	10061	10061					0.07411790516789551
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.815867371	2	547.815867	1093.61718	1.8013	0.00098678	-1.476	-0.00080858	0.32529	0.0001782	547.8152051043741	26.191	0.19304	26.18	26.083	26.276	-0.011137	1206	67	0.894683	0.04046464	0.89316356	362.87067	0	16.411865						193	9	4	NaN	NaN	NaN	0.022082	1	12250	12250		69.363	44.801	1	33475			12701	2188	7333	7486	10062	10062					0.07411790516789551
KYLLTPVNFF	10	Unmodified	_KYLLTPVNFF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.3500743290999	2	621.350074	1240.6856	0.90475	0.00056217	-2.1185	-0.0013163	-1.2138	-0.00075417	621.3488761182272	30.801	0.21715	30.801	30.753	30.97	0	1119	52	0.9479278	0.031172097	0.9479278	383.89838	0	12.624298						219	10	4	NaN	NaN	NaN	0.013726	1	17548	17548		66.481	43.364	1	45700			12702	2188	7334	7487	10063	10063					0.07488035096616841
KYLLTPVNFF	10	Unmodified	_KYLLTPVNFF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.3500743290999	2	621.350074	1240.6856	0.67855	0.00042162	-2.2337	-0.0013879	-1.5552	-0.00096629	621.3485301803416	30.848	0.19311	30.842	30.77	30.963	-0.0057545	1119	52	0.9479278	0.03116864	0.94640833	383.89838	0	12.622925						274	9	4	NaN	NaN	NaN	0.00037805	1	16806	16806		92.758	68.196	1	44469			12703	2188	7334	7487	10064	10064					0.07488035096616841
KYLNENQLSQL	11	Unmodified	_KYLNENQLSQL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3566162700001	2	675.356616	1348.69868	1.0861	0.00073351	-1.9648	-0.0013269	-0.87869	-0.00059343	675.3560742589062	20.766	0.048216	20.766	20.742	20.79	0	1089	37	0.96624947	0.02197653	0.96624947	390.97333	0	8.8923645						61	3	3	NaN	NaN	NaN	0.71355	1	19530	19530		12.307	6.3869	1	5311.2			12704	2378	7335	7488	10065	10065					0.0382782141809912
KYLNENQLSQL	11	Unmodified	_KYLNENQLSQL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3566162700001	2	675.356616	1348.69868	0.81091	0.00054765	-5.1942	-0.0035079	-4.3833	-0.0029603	675.8541027547316	20.791	0.12034	20.776	20.728	20.849	-0.014086	1089	34	0.96624947	0.020144105	0.96473	390.97336	0	8.150879						109	6	3	NaN	NaN	NaN	0.50124	1	18654	18654		15.311	0.45697	1	8107.6			12705	2378	7335	7488	10066	10066					0.0382782141809912
KYLNRQEP	8	Unmodified	_KYLNRQEP_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2827230454001	2	524.282723	1046.55089	1.4648	0.00076795	-1.3505	-0.00070806	0.11424	5.9896E-05	524.2820133256403	13.397	0.35985	13.387	13.291	13.651	-0.010098	1551	55	0.6818875	0.03351164	0.6803681	276.71857	0	13.599426						561	16	4	NaN	NaN	NaN	0.6053	1	10285	10285		24.961	0	1	186880	+		12706	8705	7336	7489	10067	10067					0.02947974674748366
KYLNRQEP	8	Unmodified						0	0	0			REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	524.282723	1046.55089	1.4648	0.00076795	-1.3505	-0.00070806	0.11424	5.9896E-05	524.2820133256403	13.397	0.35985	13.387	13.291	13.651	-0.010098	1551	55	0.6818875	0.03351164	0.6803681	276.71857		13.599426	0.067415	0.00018705	-0.0016906	NaN	24.961	561	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186880	+		12707	8705	7336	7489							0.02947974674748366
KYLPALDEF	9	Unmodified	_KYLPALDEF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5720883538997	1	1095.57209	1094.56481	2.3843	0.0026122	-0.25034	-0.00027427	2.134	0.002338	1095.571603871699	25.515	0.024115	25.515	25.515	25.539	0	105	43	1.5564433	0.024748325	1.5564433	315.63583	0	5.018799						49	2	2	NaN	NaN	NaN	0.46215	1	12614	12614		11.17	2.9255	1	4137.2			12708	5153	7337	7490	10068	10068					0.021312073831722955
KYLPALDEF	9	Unmodified	_KYLPALDEF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.28968241025	2	548.289682	1094.56481	2.0867	0.0011441	1.089	0.00059708	3.1757	0.0017412	548.290231123153	25.515	0.21713	25.515	25.467	25.684	0	1239	97	0.87444305	0.058927655	0.87444305	354.65778	0	23.899963						407	10	4	NaN	NaN	NaN	0.013696	1	12616	12616		81.699	44.397	1	227020			12709	5153	7337	7490	10069	10069					0.021312073831722955
KYLPALDEF	9	Unmodified	_KYLPALDEF_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.28968241025	2	548.289682	1094.56481	2.3285	0.0012767	5.471	0.0029997	7.7994	0.0042764	548.293321411153	25.539	0.193	25.528	25.503	25.696	-0.0116	1242	97	0.87260187	0.058934033	0.8710824	353.911	0	23.902557						608	9	4	NaN	NaN	NaN	0.059222	1	12288	12288		42.995	4.8639	1	289050			12710	5153	7337	7490	10070	10070					0.021312073831722955
KYLPALDEF	9	Unmodified						0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1095.57209	1094.56481	2.5549	0.0027991	-3.2868	-0.0036009	-0.73186	-0.0008018	1095.5707653292557	25.539	0.072428	25.528	25.503	25.576	-0.0116	102	46	1.5582114	0.026520252	1.556692	315.9944		5.3781433	0.0061198	-0.0017779	0.00012429	NaN	11.17	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4817.4			12711	5153	7337	7490							0.021312073831722955
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3031241365001	2	597.303124	1192.5917	1.4191	0.00084762	2.3772	0.0014199	3.7963	0.0022675	597.3032190763535	27.012	0.33781	27.012	26.964	27.302	0	1197	109	0.9001988	0.06615049	0.9001988	364.7305	0	26.801971						682	15	3	NaN	NaN	NaN	0.0028258	1	16223	16223		108.53	65.536	1	291320			12712	908	7338	7491	10071	10071					0.0031031599437483237
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3031241365001	2	597.303124	1192.5917	1.1989	0.00071614	0.88624	0.00052935	2.0852	0.0012455	597.3030924154792	27.035	0.33792	27.025	26.905	27.242	-0.010124	1197	118	0.9001988	0.07164377	0.8986794	364.7305	0	29.027649						1042	15	4	NaN	NaN	NaN	0.013696	1	15608	15608		81.699	55.584	1	309480			12713	908	7338	7491	10072	10072					0.0031031599437483237
KYLPEWTAW	9	Unmodified						0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.303124	1192.5917	1.3418	0.00080148	-4.0954	-0.0024462	-2.7536	-0.0016447	597.8012142075617	27.373	0.072412	27.363	27.363	27.436	-0.010126	1206	46	0.894683	0.02759397	0.89316356	362.4957		11.180145	0.17555	-0.0055986	-0.0035176	NaN	108.53	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3667.3			12714	908	7338	7491							0.0031031599437483237
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8289747462501	2	539.828975	1077.6434	0.98272	0.0005305	-2.1464	-0.0011587	-1.1637	-0.00062821	539.8282200070778	27.349	0.19307	27.339	27.291	27.484	-0.010126	1212	61	0.8910048	0.03679794	0.88948536	361.44547	0	14.92746						186	9	3	NaN	NaN	NaN	0.021751	1	11579	11579		69.782	27.465	1	23365			12715	1709	7339	7492	10073	10073					0.10768059688280118
KYLQQVNH	8	Unmodified	_KYLQQVNH_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.27744070225	2	515.277441	1028.54033	1.0858	0.00055949	-3.6716	-0.0018919	-2.5858	-0.0013324	515.2764843647839	13.421	0.16797	13.411	13.315	13.483	-0.010098	1551	46	0.6818875	0.027927876	0.6803681	276.78146	0	11.33606						177	8	3	NaN	NaN	NaN	0.78264	1	9520	9520		11.548	0.94349	1	18458			12716	5836	7340	7493	10074	10074					0.027199920203202055
KYLQQVNH	8	Unmodified						0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.277441	1028.54033	1.9202	0.00098941	-4.6637	-0.0024031	-2.7436	-0.0014137	515.2775222543438	13.252	0.16815	13.252	13.228	13.397	0	1551	52	0.6818875	0.03164816	0.6818875	276.7815		12.846161	-0.079412	-0.00062505	0.00075972	NaN	11.548	200	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21223			12717	5836	7340	7493							0.027199920203202055
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7951319289	2	543.795132	1085.57571	1.9442	0.0010572	-1.1594	-0.00063047	0.78476	0.00042675	543.794282516784	22.308	0.21693	22.308	22.26	22.477	0	1215	106	0.8891654	0.064448655	0.8891654	360.66605	0	26.141846						518	10	4	NaN	NaN	NaN	0.03618	1	12206	12206		52.78	16.193	1	225510			12718	1187	7341	7494	10075	10075					0.036346097574551095
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TOP3B|p.D423H|1|0.37|ENSG00000100038|chr22:21962831-21962831|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289	2	543.795132	1085.57571	1.6007	0.00087045	0.081432	4.4282E-05	1.6821	0.00091473	543.7953310450605	22.332	0.21661	22.318	22.27	22.486	-0.013731	1215	106	0.8891654	0.06444168	0.88764596	360.66602	0	26.139038						656	10	5	NaN	NaN	NaN	0.01452	1	11901	11901		79.199	37.739	1	232670			12719	1187	7341	7494	10076	10076					0.036346097574551095
KYLSDNVHL	9	Unmodified	_KYLSDNVHL_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.790380902	2	544.790381	1087.56621	1.8483	0.001007	-1.3294	-0.00072424	0.51895	0.00028272	544.7895684360655	17.813	0.095938	17.813	17.765	17.861	0	1209	49	0.892844	0.02942884	0.892844	362.14984	0	11.936737						102	5	2	NaN	NaN	NaN	0.024359	1	12285	12285		66.481	36.883	1	17715			12720	1535	7342	7495	10077	10077					0.025928414719373905
KYLSDNVHL	9	Unmodified	_KYLSDNVHL_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.790380902	2	544.790381	1087.56621	1.8971	0.0010335	-1.3637	-0.00074291	0.53344	0.00029061	544.7894222675422	17.906	0.11996	17.892	17.844	17.964	-0.013786	1212	64	0.8910048	0.038639963	0.88948536	361.40384	0	15.672882						181	6	3	NaN	NaN	NaN	0.064504	1	11977	11977		40.957	19.122	1	20222			12721	1535	7342	7495	10078	10078					0.025928414719373905
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2847344181	2	518.284734	1034.55492	2.0195	0.0010467	-1.3887	-0.00071977	0.63071	0.00032689	518.2846077396578	19.372	0.21592	19.372	19.324	19.54	0	1242	82	0.87260187	0.049744427	0.87260187	354.16614	0	20.189941						360	10	5	NaN	NaN	NaN	0.00017726	1	9981	9981		118.2	80.073	1	118630			12722	4422	7343	7496	10079	10079					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2847344181	2	518.284734	1034.55492	1.6054	0.00083207	-2.0586	-0.001067	-0.45321	-0.00023489	518.2835328652222	19.563	0.40918	19.549	19.452	19.861	-0.014141	1242	85	0.87260187	0.05158961	0.8710824	354.16614	0	20.938843						542	18	4	NaN	NaN	NaN	2.9468E-07	1	9771	9771		130.62	77.86	1	115760			12723	4422	7343	7496	10080	10080					0.03902064168460129
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8295060625001	2	591.829506	1181.64446	2.0804	0.0012312	-1.5858	-0.00093854	0.49452	0.00029267	591.8280708517509	23.995	0.33784	23.995	23.947	24.285	0	1161	94	0.9222442	0.056910694	0.9222442	373.70218	0	23.06073						982	15	6	NaN	NaN	NaN	0.00016917	1	15892	15892		104.89	54.929	1	1448400			12724	3084	7344	7497	10081	10081					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8295060625001	2	591.829506	1181.64446	2.0797	0.0012308	-1.9228	-0.001138	0.15685	9.283E-05	591.8278162842265	24.043	0.43432	24.031	23.958	24.393	-0.012749	1164	103	0.9204082	0.06243503	0.91888875	372.9582	0	25.299286						994	19	6	NaN	NaN	NaN	0.0017553	1	15297	15297		86.792	31.201	1	1426700			12725	3084	7344	7497	10082	10082					0.06090274057191891
KYLTAEAFGF	10	Unmodified	_KYLTAEAFGF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;FSCN1|p.A107Gfs*44|1|0.3|ENSG00000075618|chr7:5593253-5593254|-/G|frameshift_variant	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7951319289	2	573.795132	1145.57571	2.5052	0.0014375	-0.21687	-0.00012444	2.2884	0.001313	573.7960577731241	26.288	0.24133	26.288	26.191	26.432	0	1176	100	0.9130621	0.060654342	0.9130621	370.11588	0	24.58664						740	11	5	NaN	NaN	NaN	0.019815	1	14648	14648		63.765	35.976	1	454660			12726	840	7345	7498	10083	10083					0.008746097574658052
KYLTAEAFGF	10	Unmodified	_KYLTAEAFGF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;FSCN1|p.A107Gfs*44|1|0.3|ENSG00000075618|chr7:5593253-5593254|-/G|frameshift_variant	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7951319289	2	573.795132	1145.57571	1.971	0.001131	0.47788	0.0002742	2.4489	0.0014052	573.7964114567702	26.311	0.36194	26.3	26.107	26.469	-0.011135	1176	109	0.9130621	0.06615049	0.91154265	370.11588	0	26.814545						719	16	5	NaN	NaN	NaN	0.0093647	1	14165	14165		72.076	19.296	1	468820			12727	840	7345	7498	10084	10084					0.008746097574658052
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.3371639191	2	606.337164	1210.65977	2.0583	0.001248	-2.3978	-0.0014539	-0.33957	-0.0002059	606.3354762006348	28.146	0.36194	28.146	28.074	28.436	0	1128	100	0.9424274	0.060530066	0.9424274	381.77496	0	24.5206						853	16	6	NaN	NaN	NaN	0.0094358	1	16738	16738		71.985	13.587	1	677510			12728	937	7346	7499	10085	10085					0.06287140854374229
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.3371639191	2	606.337164	1210.65977	1.3981	0.00084772	-1.74	-0.0010551	-0.34194	-0.00020733	606.3359759996351	28.17	0.33788	28.161	28.112	28.45	-0.0089779	1128	106	0.9424274	0.06419855	0.94090796	381.77496	0	26.006683						910	15	6	NaN	NaN	NaN	0.013726	1	16067	16067		66.481	5.2825	1	710840			12729	937	7346	7499	10086	10086					0.06287140854374229
KYLTQVDILL	10	Unmodified	_KYLTQVDILL_					0	0	0		HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3606390154001	2	603.360639	1204.70673	1.4985	0.00090415	-1.4016	-0.00084566	0.096939	5.8489E-05	603.3595087834567	28.098	0.096542	28.098	28.074	28.17	0	1122	43	0.9460945	0.02566415	0.9460945	383.28183	0	10.397064						95	5	3	NaN	NaN	NaN	0.23201	1	16619	16619		32.778	14.808	1	12277			12730	2379	7347	7500	10087	10087					0.11256000405523992
KYLTQVDILL	10	Unmodified	_KYLTQVDILL_					0	0	0		HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.3606390154001	2	603.360639	1204.70673	0.73992	0.00044644	-2.7484	-0.0016583	-2.0085	-0.0012118	603.3593612432574	28.121	0.096504	28.112	28.088	28.185	-0.0089779	1119	37	0.9479278	0.021997869	0.94640833	384.02454	0	8.911774						112	5	3	NaN	NaN	NaN	0.52943	1	15954	15954		18.233	11.249	1	13137			12731	2379	7347	7500	10088	10088					0.11256000405523992
KYLTSLQLVQF	11	Unmodified	_KYLTSLQLVQF_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.38464542795	2	670.384645	1338.75474	1.6712	0.0011203	-3.4947	-0.0023428	-1.8235	-0.0012225	670.3822182749002	28.388	0.048248	28.388	28.363	28.412	0	1065	31	0.9808926	0.018296003	0.9808926	396.9283	0	7.4036865						44	3	2	NaN	NaN	NaN	0.68478	1	19394	19394		8.4563	1.4719	1	4263.1			12732	4302	7348	7501	10089	10089					0.09891074325537375
KYLTSLQLVQF	11	Unmodified	_KYLTSLQLVQF_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.38464542795	2	670.384645	1338.75474	1.4797	0.00099199	-5.1413	-0.0034466	-3.6616	-0.0024547	670.3816987220717	28.435	0.072407	28.426	28.378	28.45	-0.0089798	1065	34	0.9808926	0.020124555	0.97937316	396.9283	0	8.143616						57	4	2	NaN	NaN	NaN	0.3345	1	18528	18528		24.393	11.391	1	4913.1			12733	4302	7348	7501	10090	10090					0.09891074325537375
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.8264320573	2	571.826432	1141.63831	1.552	0.00088747	-2.2542	-0.001289	-0.70216	-0.00040151	571.8250092338174	20.79	0.14463	20.79	20.766	20.911	0	1185	46	0.90755045	0.027558208	0.90755045	367.8968	0	11.171356						241	7	4	NaN	NaN	NaN	0.017735	1	14531	14531		83.529	28.116	1	68568			12734	3929	7349	7502	10091	10091					0.07315755825652559
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.8264320573	2	571.826432	1141.63831	0.7963	0.00045535	-1.8882	-0.0010797	-1.0919	-0.00062439	571.8256202271245	20.935	0.26487	20.921	20.849	21.113	-0.014088	1185	43	0.90755045	0.025725186	0.906031	367.8968	0	10.428314						315	12	4	NaN	NaN	NaN	0.015547	1	14050	14050		86.17	32.518	1	73293			12735	3929	7349	7502	10092	10092					0.07315755825652559
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.85244984255	2	590.85245	1179.69035	1.2132	0.00071683	-3.5375	-0.0020901	-2.3243	-0.0013733	590.8504664321221	33.142	0.33784	33.142	33.069	33.407	0	1152	67	0.92775106	0.040364265	0.92775106	375.9408	0	16.356293						570	15	5	NaN	NaN	NaN	0.026551	1	15826	15826		60.984	20.83	1	226440			12736	1685	7350	7503	10093	10093					0.1076891923939911
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.85244984255	2	590.85245	1179.69035	0.88816	0.00052477	-3.4742	-0.0020527	-2.586	-0.001528	590.8503940374457	33.213	0.26544	33.21	33.138	33.403	-0.0024757	1146	67	0.93142134	0.040359855	0.9299019	377.42807	0	16.354523						602	12	5	NaN	NaN	NaN	0.13684	1	15244	15244		40.957	12.061	1	207420			12737	1685	7350	7503	10094	10094					0.1076891923939911
KYLVLANML	9	Unmodified	_KYLVLANML_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.81227043705	2	532.81227	1063.60999	1.9502	0.0010391	-2.6928	-0.0014348	-0.74264	-0.00039569	532.811272761921	27.639	0.26548	27.639	27.495	27.76	0	1221	82	0.885486	0.049706757	0.885486	359.26654	0	20.16742						397	12	5	NaN	NaN	NaN	0.032764	1	11301	11301		55.494	13.709	1	112180			12738	4457	7351	7504	10095	10095					0.08072734644701995
KYLVLANML	9	Unmodified	_KYLVLANML_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.81227043705	2	532.81227	1063.60999	0.81635	0.00043496	-1.7732	-0.00094477	-0.95684	-0.00050981	532.8116206508016	27.687	0.21714	27.677	27.605	27.822	-0.009552	1221	67	0.885486	0.040482104	0.88396657	359.26654	0	16.424744						427	10	6	NaN	NaN	NaN	0.20577	1	11041	11041		24.961	0	1	111660			12739	4457	7351	7504	10096	10096					0.08072734644701995
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(73)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8097277480999	2	540.809728	1079.6049	2.2039	0.0011919	-2.5185	-0.001362	-0.31465	-0.00017017	540.8088655153687	23.296	0.16883	23.296	23.272	23.441	0	1212	79	0.8910048	0.04784769	0.8910048	361.4372	0	19.409485						305	8	5	NaN	NaN	NaN	0.019103	1	11975	11975		73.133	45.344	1	125440			12740	4457	7351	7505	10097	10097		475			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(73)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.8097277480999	2	540.809728	1079.6049	1.9734	0.0010672	-2.3346	-0.0012626	-0.36125	-0.00019537	540.8086686219614	23.344	0.19303	23.331	23.283	23.476	-0.013294	1212	70	0.8910048	0.042319894	0.88948536	361.4372	0	17.167145						358	9	5	NaN	NaN	NaN	0.019103	1	11664	11664		73.133	49.799	1	129810			12741	4457	7351	7505	10098	10098		475			0.06828430782070427
KYLWREVL	8	Unmodified	_KYLWREVL_					0	0	0		ENST00000414645.6_1_8:95768308-95773989:+|nuORF	ENST00000414645.6_1_8:95768308-95773989:+|nuORF	ENST00000414645.6_1_8:95768308-95773989:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.55008153229994	3	369.550082	1105.62842	1.8885	0.00069791	6.0988	0.0022538	7.9874	0.0029517	369.55235234156015	11.764	0.047965	11.764	11.74	11.788	0	1509	31	0.70793515	0.018589258	0.70793515	430.62952	0	11.307648						40	3	2	NaN	NaN	NaN	0.79149	1	13102	13102		10.36	0	1	5159			12742	6878	7352	7506	10099	10099					0.07982612610931028
KYLYQKIMF	9	Unmodified	_KYLYQKIMF_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF;ENST00000508165.1_1_4:135249290-135249890:+|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.33865236305	2	617.338652	1232.66275	1.2246	0.00075602	0.40004	0.00024696	1.6247	0.001003	617.3367875728169	22.356	0.072355	22.356	22.308	22.38	0	1125	55	0.9442611	0.032993257	0.9442611	382.4408	0	13.362793						96	4	3	NaN	NaN	NaN	0.66196	1	17352	17352		2.4615	0.28518	1	8297.4			12743	1183	7353	7507	10100	10100					0.055726927075056665
KYLYQKIMF	9	Unmodified						0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF;ENST00000508165.1_1_4:135249290-135249890:+|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.338652	1232.66275	0.91156	0.00056274	1.7398	0.0010741	2.6514	0.0016368	617.3399013542619	22.524	0.12057	22.511	22.438	22.559	-0.013733	1128	37	0.9424274	0.022005022	0.94090796	381.69812		8.9123535	0.077144	0.00074486	-0.0016765	NaN	2.4615	93	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8876.6			12744	1183	7353	7507							0.055726927075056665
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9-TXN2|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3162315117501	2	595.316232	1188.61791	2.1141	0.0012585	-1.1082	-0.00065975	1.0058	0.00059879	595.3156596125873	18.316	0.14399	18.316	18.268	18.412	0	1161	103	0.9222442	0.062482238	0.9222442	373.67688	0	25.31668						308	7	4	NaN	NaN	NaN	1.7082E-59	1	16122	16122		209.3	115.37	1	127550			12745	1231	7354	7508	10101	10101					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9-TXN2|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3162315117501	2	595.316232	1188.61791	1.8264	0.0010873	-1.1087	-0.00066001	0.7177	0.00042726	595.3155724710693	18.41	0.31204	18.396	18.324	18.636	-0.013948	1161	55	0.9222442	0.03305024	0.92072475	373.67688	0	13.391357						373	14	4	NaN	NaN	NaN	1.8911E-35	1	15513	15513		180.83	90.577	1	129780			12746	1231	7354	7508	10102	10102					0.031145851658493484
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.27063237735	2	604.270632	1206.52671	1.2511	0.00075601	-1.9047	-0.0011509	-0.65355	-0.00039492	604.2694453870605	28.991	0.14481	28.991	28.967	29.112	0	1179	64	0.9112251	0.038589835	0.9112251	369.14923	0	15.63327						182	7	2	NaN	NaN	NaN	0.46215	1	16639	16639		11.17	5.2506	1	40465			12747	2576	7355	7509	10103	10103					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.27063237735	2	604.270632	1206.52671	1.1619	0.0007021	-0.96348	-0.00058221	0.19841	0.00011989	604.7712973789618	29.498	0.21719	29.498	29.329	29.546	0	1176	67	0.9130621	0.04041654	0.9130621	369.89343	0	16.37326						186	10	2	NaN	NaN	NaN	0.40649	1	16640	16640		13.463	1.4144	1	30276			12748	2576	7355	7509	10104	10104					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.27063237735	2	604.270632	1206.52671	1.9216	0.0011611	-0.96619	-0.00058384	0.95538	0.00057731	604.270066876104	28.725	0.31372	28.725	28.629	28.943	0	1173	109	0.91489893	0.06615764	0.91489893	370.63754	0	26.801361						1001	14	6	NaN	NaN	NaN	0.01966	1	16641	16641		72.428	30.111	1	966130			12749	2576	7355	7509	10105	10105					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.27063237735	2	604.270632	1206.52671	1.1609	0.00070149	-0.10775	-6.5109E-05	1.0531	0.00063638	604.2700912870075	29.184	0.14479	29.184	29.136	29.28	0	1173	79	0.91489893	0.04775989	0.91489893	370.63754	0	19.348145						242	7	4	NaN	NaN	NaN	0.31471	1	16642	16642		17.97	9.0077	1	27861			12750	2576	7355	7509	10106	10106					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.27063237735	2	604.270632	1206.52671	1.5502	0.00093674	-0.41906	-0.00025323	1.1311	0.00068351	604.2703494212873	28.725	0.38613	28.716	28.644	29.03	-0.0083504	1170	115	0.91673553	0.06982553	0.9152161	371.3816	0	28.287262						1132	17	6	NaN	NaN	NaN	0.013959	1	15972	15972		80.901	38.583	1	957680			12751	2576	7355	7509	10107	10107					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.27063237735	2	604.270632	1206.52671	0.70358	0.00042515	0.47108	0.00028466	1.1747	0.00070981	604.2715081723478	29.183	0.096571	29.175	29.151	29.248	-0.0077209	1173	67	0.91489893	0.040399075	0.9133795	370.63754	0	16.36621						197	5	3	NaN	NaN	NaN	0.19268	1	15973	15973		25.801	13.752	1	26004			12752	2576	7355	7509	10108	10108					-0.06829046593793464
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.27063237735	2	604.270632	1206.52671	0.91851	0.00055503	0.86223	0.00052102	1.7807	0.0010761	604.2711411008808	29.666	0.5308	29.659	29.514	30.045	-0.0070648	1179	109	0.9112251	0.06610769	0.90970564	369.14923	0	26.781097						728	23	3	NaN	NaN	NaN	0.097143	1	15975	15975		36.235	18.265	1	137630			12753	2576	7355	7509	10109	10109					-0.06829046593793464
KYMDIEFDF	9	Unmodified						0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	604.270632	1206.52671	1.4047	0.00084884	-0.40273	-0.00024335	1.002	0.00060549	604.2700739504331	29.642	0.19305	29.642	29.498	29.691	0	1179	97	0.9112251	0.05876237	0.9112251	369.14923		23.80542	-0.0081176	-0.00091379	0.00075972	NaN	36.235	383	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71348			12754	2576	7355	7509							-0.06829046593793464
KYMDIEFDF	9	Unmodified						0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.270632	1206.52671	0.75862	0.00045841	-0.9981	-0.00060312	-0.23948	-0.00014471	604.2699376578357	29.449	0.048269	29.442	29.442	29.49	-0.0070667	1176	46	0.9130621	0.027558208	0.91154265	369.89343		11.164215	-0.028083	-3.4032E-05	-0.00075972	NaN	13.463	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11846			12755	2576	7355	7509							-0.06829046593793464
KYMDIEFDF	9	Unmodified						0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.270632	1206.52671	0.6955	0.00042027	-0.45009	-0.00027198	0.24541	0.00014829	604.2705284912475	29.304	0.096533	29.296	29.296	29.393	-0.0077229	1173	52	0.91489893	0.031229258	0.9133795	370.63754		12.651398	0.056081	-0.00024636	-0.00075972	NaN	17.97	138	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22385			12756	2576	7355	7509							-0.06829046593793464
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(64)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.2680896884	2	612.26809	1222.52163	2.2351	0.0013685	-0.77715	-0.00047583	1.458	0.00089267	612.267369747513	25.998	0.41025	25.998	25.853	26.263	0	1185	127	0.90755045	0.07715899	0.90755045	367.60617	0	31.25351						1437	18	6	NaN	NaN	NaN	0.026469	1	17032	17032		63.731	19.092	1	1356000			12757	2576	7355	7510	10110	10110		297			-0.08073350456425032
KYMDIEFDF	9	Oxidation (M)	_KYM(Oxidation (M))DIEFDF_		KYM(1)DIEFDF		KYM(64)DIEFDF	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.2680896884	2	612.26809	1222.52163	2.544	0.0015576	-0.88589	-0.0005424	1.6581	0.0010152	612.2675029699598	26.022	0.55503	26.011	25.914	26.469	-0.011135	1185	130	0.90755045	0.079025984	0.906031	367.60617	0	32.009705						1554	24	6	NaN	NaN	NaN	0.026469	1	16340	16340		63.731	31.278	1	1438700			12758	2576	7355	7510	10111	10111		297			-0.08073350456425032
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.77079955285	2	596.7708	1191.52705	1.1908	0.00071064	-6.0079	-0.0035854	-4.8171	-0.0028747	597.2685534136634	27.181	0.19301	27.181	27.109	27.302	0	1188	73	0.90571284	0.04411459	0.90571284	366.96838	0	17.873962						341	9	4	NaN	NaN	NaN	0.041983	1	16180	16180		50.315	1.6648	1	67939			12759	5034	7356	7511	10112	10112					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.77079955285	2	596.7708	1191.52705	2.0941	0.0012497	-0.48173	-0.00028749	1.6123	0.00096219	596.770260636455	27.953	0.4585	27.953	27.857	28.315	0	1173	106	0.91489893	0.06433731	0.91489893	370.6903	0	26.067596						1194	20	6	NaN	NaN	NaN	0.0042638	1	16186	16186		104.2	14.943	1	1175300			12760	5034	7356	7511	10113	10113					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	0.72506	0.00043269	-6.6661	-0.0039781	-5.941	-0.0035454	596.7668918520179	29.207	0.12068	29.2	29.175	29.296	-0.0077209	1179	76	0.9112251	0.045945227	0.90970564	369.20178	0	18.615692						161	6	2	NaN	NaN	NaN	0.25548	1	15567	15567		21.771	6.3084	1	26489			12761	5034	7356	7511	10114	10114					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	0.8892	0.00053065	-4.8005	-0.0028648	-3.9113	-0.0023342	597.2707990377229	28.918	0.2896	28.909	28.837	29.127	-0.0083504	1179	94	0.9112251	0.056978285	0.90970564	369.20178	0	23.085968						761	13	6	NaN	NaN	NaN	0.04743	1	15568	15568		48.002	7.8484	1	91024			12762	5034	7356	7511	10115	10115					-0.06105626873932124
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	1.5964	0.00095269	-0.17486	-0.00010435	1.4215	0.00084834	596.7704033925827	27.977	0.45856	27.968	27.847	28.305	-0.0089798	1170	118	0.91673553	0.07169789	0.9152161	371.43445	0	29.049896						1267	20	8	NaN	NaN	NaN	0.0042638	1	15574	15574		104.2	14.943	1	1176600			12763	5034	7356	7511	10116	10116					-0.06105626873932124
KYMDINFDF	9	Unmodified						0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.7708	1191.52705	1.2528	0.00074765	-3.5521	-0.0021198	-2.2993	-0.0013721	597.2695900110134	29.015	0.31373	29.015	28.967	29.28	0	1182	67	0.9093879	0.040434003	0.9093879	368.4574		16.38269	-0.092287	0.00075409	-0.00015889	NaN	21.771	419	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66775			12764	5034	7356	7511							-0.06105626873932124
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(94)DINFDF	0	0	1		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.7682568639	2	604.768257	1207.52196	2.2045	0.0013332	-1.2928	-0.00078187	0.91169	0.00055136	604.7670807108669	25.153	0.38604	25.153	25.033	25.419	0	1185	109	0.90755045	0.06612909	0.90755045	367.65717	0	26.78952						1311	17	6	NaN	NaN	NaN	0.0092442	1	16662	16662		93.929	24.147	1	1494200			12765	5034	7356	7512	10117	10117		528			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(94)DINFDF	0	0	1		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.7682568639	2	604.768257	1207.52196	2.1854	0.0013217	-1.1621	-0.00070281	1.0233	0.00061884	604.7674616396822	25.153	0.4342	25.141	24.996	25.431	-0.012011	1185	121	0.90755045	0.073492646	0.906031	367.65717	0	29.772583						1317	19	7	NaN	NaN	NaN	0.0092442	1	15996	15996		93.929	24.147	1	1475300			12766	5034	7356	7512	10118	10118		528			-0.07349930736563692
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.77079955285	2	596.7708	1191.52705	0.5807	0.00034654	-9.1199	-0.0054425	-8.5392	-0.0050959	597.2657496963072	33.986	0.096497	33.986	33.938	34.035	0	1200	61	0.89836043	0.036762178	0.89836043	363.9894	0	14.8949585						114	5	3	NaN	NaN	NaN	0.59509	1	16179	16179		5.6942	1.384	1	7943			12767	5737	7357	7513	10119	10119					-0.06105626873932124
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.77079955285	2	596.7708	1191.52705	2.2791	0.0013601	-0.86321	-0.00051514	1.4159	0.00084498	596.7698971405223	26.432	0.45901	26.432	26.36	26.819	0	1179	109	0.9112251	0.066171944	0.9112251	369.20178	0	26.810944						1107	20	6	NaN	NaN	NaN	0.011167	1	16185	16185		89.374	14.285	1	1746100			12768	5737	7357	7513	10120	10120					-0.06105626873932124
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	0.86531	0.00051639	-1.6134	-0.00096286	-0.74813	-0.00044646	596.769725497281	27.59	0.24129	27.581	27.533	27.774	-0.009552	1185	70	0.90755045	0.042269647	0.906031	367.71292	0	17.126434						322	11	2	NaN	NaN	NaN	0.12104	1	15571	15571		32.778	8.216	1	100180			12769	5737	7357	7513	10121	10121					-0.06105626873932124
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	0.8757	0.00052259	-1.5077	-0.00089976	-0.63202	-0.00037717	596.7702728091818	27.494	0.19305	27.484	27.315	27.508	-0.009552	1185	88	0.90755045	0.053302348	0.906031	367.71292	0	21.596527						356	9	2	NaN	NaN	NaN	0.21451	1	15572	15572		24.4	6.6013	1	99137			12770	5737	7357	7513	10122	10122					-0.06105626873932124
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	2.0228	0.0012071	-0.92815	-0.00055389	1.0946	0.00065324	596.7698310886562	26.456	0.50673	26.445	26.324	26.831	-0.011137	1179	136	0.9112251	0.082719445	0.90970564	369.20178	0	33.515503						837	22	2	NaN	NaN	NaN	0.013696	1	15573	15573		81.699	14.545	1	1794300			12771	5737	7357	7513	10123	10123					-0.06105626873932124
KYMDVQFDF	9	Unmodified						0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.7708	1191.52705	1.3009	0.00077634	-1.6655	-0.00099393	-0.3646	-0.00021758	596.7699076568689	27.736	0.096495	27.736	27.736	27.833	0	1188	58	0.90571284	0.034918368	0.90571284	366.96838		14.147919	0.077572	-4.9518E-05	-0.00015909	NaN	32.778	158	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29196			12772	5737	7357	7513							-0.06105626873932124
KYMDVVKERI	10	Unmodified	_KYMDVVKERI_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.5725574117	3	427.572557	1279.69584	1.5451	0.00066063	-2.3009	-0.00098381	-0.75584	-0.00032318	427.57173707885534	17.021	0.096039	17.021	16.997	17.093	0	1353	34	0.8043377	0.020334303	0.8043377	488.45135	0	12.34845						110	5	3	NaN	NaN	NaN	0.030693	1	18423	18423		44.225	34.012	1	13179			12773	1043	7358	7514	10124	10124					0.0671827475957798
KYMDVVKERI	10	Unmodified	_KYMDVVKERI_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5725574117	3	427.572557	1279.69584	1.4362	0.00061409	-1.1232	-0.00048025	0.31302	0.00013384	427.5725342500348	17.306	0.2159	17.292	17.196	17.412	-0.013569	1353	34	0.8043377	0.020336509	0.80281824	488.45135	0	12.349762						148	10	3	NaN	NaN	NaN	0.019258	1	17604	17604		47.511	36.689	1	11296			12774	1043	7358	7514	10125	10125					0.0671827475957798
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.7713308691	2	630.771331	1259.52811	1.9453	0.001227	-0.83784	-0.00052849	1.1075	0.00069855	630.7706710035882	16.734	0.26378	16.734	16.686	16.949	0	1161	43	0.9222442	0.025702953	0.9222442	373.43536	0	10.407654						388	12	4	NaN	NaN	NaN	0.044153	1	17978	17978		49.394	33.572	1	72176			12775	2194	7359	7515	10126	10126					-0.09127412505040411
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.7713308691	2	630.771331	1259.52811	1.6935	0.0010682	-0.33211	-0.00020949	1.3614	0.00085874	630.771356775203	16.778	0.2636	16.765	16.717	16.981	-0.013294	1161	49	0.9222442	0.029374838	0.92072475	373.43536	0	11.89447						397	12	5	NaN	NaN	NaN	0.0068607	1	17205	17205		98.792	65.367	1	74187			12776	2194	7359	7515	10127	10127					-0.09127412505040411
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(49)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.76878818015	2	638.768788	1275.52302	1.6524	0.0010555	-2.3624	-0.001509	-0.71003	-0.00045354	638.7677549041331	14.741	0.36025	14.741	14.717	15.077	0	1161	58	0.9222442	0.034888268	0.9222442	373.38458	0	14.125061						378	16	5	NaN	NaN	NaN	0.044153	1	18328	18328		49.394	33.931	1	56413			12777	2194	7359	7516	10128	10128		255			-0.10371716367671979
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(45)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.76878818015	2	638.768788	1275.52302	1.5156	0.0009681	-1.3621	-0.00087004	0.15351	9.806E-05	638.767911777323	14.788	0.19211	14.776	14.704	14.896	-0.011738	1161	46	0.9222442	0.027537405	0.92072475	373.38458	0	11.148956						255	9	3	NaN	NaN	NaN	0.055363	1	17512	17512		44.633	27.435	1	43660			12778	2194	7359	7516	10129	10129		255			-0.10371716367671979
KYMETIEKL	9	Unmodified	_KYMETIEKL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8099247133501	2	577.809925	1153.6053	2.2946	0.0013259	-2.8572	-0.0016509	-0.56254	-0.00032504	577.8087493944845	18.221	0.071922	18.221	18.197	18.268	0	1203	55	0.8965218	0.033103883	0.8965218	363.3811	0	13.417755						176	4	5	NaN	NaN	NaN	0.11323	1	14933	14933		33.907	7.7924	1	31216			12779	4188	7360	7517	10130	10130					0.03463805711317036
KYMETIEKL	9	Unmodified	_KYMETIEKL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-GTF2A1L|3|fusion;PPP1R21-GTF2A1L|1|fusion;PPP1R21-GTF2A1L|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8099247133501	2	577.809925	1153.6053	2.013	0.0011631	-4.8798	-0.0028196	-2.8668	-0.0016565	577.8072891848406	18.386	0.16815	18.372	18.3	18.468	-0.01395	1203	52	0.8965218	0.031259656	0.89500237	363.3811	0	12.670258						277	8	4	NaN	NaN	NaN	0.14227	1	14446	14446		29.706	7.8712	1	50817			12780	4188	7360	7517	10131	10131					0.03463805711317036
KYMGIPQIRQL	11	Unmodified	_KYMGIPQIRQL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.8842896747001	2	673.88429	1345.75403	1.4331	0.00096575	-0.95456	-0.00064327	0.47854	0.00032248	673.8832735835053	21.681	0.12046	21.681	21.633	21.754	0	1077	34	0.9735726	0.020133197	0.9735726	393.94525	0	8.146698						88	6	2	NaN	NaN	NaN	0.32676	1	19490	19490		32.778	23.166	1	7464.4			12781	3308	7361	7518	10132	10132					0.09497956404857177
KYMGIPQIRQL	11	Unmodified	_KYMGIPQIRQL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.5919519386667	3	449.591952	1345.75403	1.5303	0.00068801	-2.394	-0.0010763	-0.8637	-0.00038831	449.5907592519187	21.85	0.096258	21.836	21.764	21.86	-0.013895	1359	31	0.8006399	0.018488765	0.7991205	485.9513	0	11.221832						52	5	2	NaN	NaN	NaN	0.36359	1	18625	18625		23.353	15.549	1	4677.3			12782	3308	7361	7518	10133	10133					0.09497956404857177
KYMGIPQIRQL	11	Unmodified	_KYMGIPQIRQL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.8842896747001	2	673.88429	1345.75403	1.2066	0.0008131	0.026501	1.7858E-05	1.2331	0.00083096	674.3852451157815	21.85	0.12032	21.836	21.74	21.86	-0.013895	1077	34	0.9735726	0.020135403	0.9720532	393.94525	0	8.147583						89	6	2	NaN	NaN	NaN	0.77178	1	18626	18626		4.3102	2.979	1	7554.7			12783	3308	7361	7518	10134	10134					0.09497956404857177
KYMKEKLLF	9	Unmodified	_KYMKEKLLF_					0	0	0		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5667437523	3	400.566744	1198.6784	1.8009	0.00072137	-2.2541	-0.0009029	-0.4532	-0.00018154	400.56594906212604	18.053	0.23988	18.053	17.957	18.197	0	1464	55	0.73579943	0.033409894	0.73579943	447.15182	0	20.303497						319	11	4	NaN	NaN	NaN	0.097143	1	16433	16433		26.96	9.3784	1	53625			12784	7047	7362	7519	10135	10135					0.08700979224568073
KYMKEKLLF	9	Unmodified	_KYMKEKLLF_					0	0	0		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.34647739515	2	600.346477	1198.6784	1.7803	0.0010688	-1.7828	-0.0010703	-0.0024165	-1.4507E-06	600.3464287260035	18.029	0.14391	18.029	17.981	18.125	0	1125	46	0.9442611	0.027504742	0.9442611	382.56085	0	11.143372						167	7	3	NaN	NaN	NaN	0.039271	1	16434	16434		51.467	24.42	1	14412			12785	7047	7362	7519	10136	10136					0.08700979224568073
KYMLKANLI	9	Unmodified	_KYMLKANLI_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3255449878001	2	547.325545	1092.63654	1.561	0.00085435	-1.8472	-0.001011	-0.28625	-0.00015667	547.3246870289386	19.997	0.16824	19.997	19.948	20.117	0	1221	46	0.885486	0.02759695	0.885486	359.1445	0	11.193054						173	8	4	NaN	NaN	NaN	0.00020136	1	12517	12517		116.74	77.818	1	30283			12786	4298	7363	7520	10137	10137					0.09392423536064598
KYMLKANLI	9	Unmodified	_KYMLKANLI_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3255449878001	2	547.325545	1092.63654	1.464	0.00080128	-0.62311	-0.00034104	0.84088	0.00046024	547.3250271589891	20.188	0.19253	20.174	20.078	20.271	-0.014141	1221	40	0.885486	0.02391994	0.88396657	359.1445	0	9.701691						249	9	4	NaN	NaN	NaN	0.036546	1	12204	12204		52.624	23.026	1	31051			12787	4298	7363	7520	10138	10138					0.09392423536064598
KYMLKANLI	9	Oxidation (M)	_KYM(Oxidation (M))LKANLI_		KYM(1)LKANLI		KYM(47)LKANLI	0	0	1		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.32300229885	2	555.323002	1108.63145	1.6389	0.00091015	-1.502	-0.00083409	0.13695	7.6054E-05	555.3221967408971	18.818	0.19219	18.804	18.731	18.924	-0.014059	1221	43	0.885486	0.025758564	0.88396657	359.07996	0	10.445526						229	9	3	NaN	NaN	NaN	0.048656	1	12865	12865		47.482	29.683	1	29704			12788	4298	7363	7521	10139	10139		461			0.0814811967343303
KYMLTHQEL	9	Unmodified	_KYMLTHQEL_					0	0	0		ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;chr15:69446091-69446286|506|11.59|0.5|4.54|+|ENST00000395392|KIF23,KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23	ENST00000560125.1_1_15:69737113-69739281:+|nuORF	ENST00000560125.1_1_15:69737113-69739281:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7998913433001	2	581.799891	1161.58523	1.9445	0.0011313	-3.2379	-0.0018838	-1.2934	-0.00075248	581.7980671172666	16.134	0.16799	16.134	16.086	16.254	0	1203	49	0.8965218	0.029425621	0.8965218	363.3516	0	11.925934						199	8	4	NaN	NaN	NaN	0.090258	1	15209	15209		37.231	14.113	1	17961			12789	129	7364	7522	10140	10140					0.010900547713617925
KYMLTHQEL	9	Unmodified	_KYMLTHQEL_					0	0	0		ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;chr15:69446091-69446286|506|11.59|0.5|4.54|+|ENST00000395392|KIF23,KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23	ENST00000560125.1_1_15:69737113-69739281:+|nuORF	ENST00000560125.1_1_15:69737113-69739281:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7998913433001	2	581.799891	1161.58523	2.0857	0.0012135	-4.259	-0.0024779	-2.1733	-0.0012644	581.7979332571	16.299	0.21579	16.286	16.214	16.43	-0.012993	1206	43	0.894683	0.025747418	0.89316356	362.60635	0	10.435181						138	10	2	NaN	NaN	NaN	0.064504	1	14692	14692		40.957	13.168	1	14764			12790	129	7364	7522	10141	10141					0.010900547713617925
KYMNNITYYF	10	Unmodified	_KYMNNITYYF_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.8182810617001	2	678.818281	1355.62201	1.8053	0.0012254	-1.6662	-0.0011311	0.13902	9.4372E-05	679.319865171641	25.467	0.16883	25.467	25.443	25.612	0	1104	61	0.9570911	0.036639452	0.9570911	387.24753	0	14.824646						198	8	3	NaN	NaN	NaN	0.507	1	19612	19612		19.164	1.3646	1	20014			12791	3876	7365	7523	10142	10142					-0.04157693402748919
KYMNNITYYF	10	Unmodified						0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	678.818281	1355.62201	1.7277	0.0011728	-1.9456	-0.0013207	-0.21793	-0.00014793	678.8154267530077	25.491	0.14478	25.479	25.455	25.6	-0.012011	1104	46	0.9570911	0.027484	0.95557165	387.24753		11.12027	0.0059129	-0.00024277	-0.00075972	NaN	19.164	149	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17641			12792	3876	7365	7523							-0.04157693402748919
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3626587756	2	648.362659	1294.71076	1.9963	0.0012943	-2.2417	-0.0014534	-0.24534	-0.00015907	648.3611683350571	21.778	0.19269	21.778	21.73	21.922	0	1122	79	0.9460945	0.04766208	0.9460945	382.97995	0	19.29367						430	9	5	NaN	NaN	NaN	2.3943E-05	1	18686	18686		90.252	67.134	1	93337			12793	5782	7366	7524	10143	10143					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.57753133926667	3	432.577531	1294.71076	1.3836	0.00059853	-1.1921	-0.00051566	0.19157	8.2867E-05	432.576323023913	21.778	0.048178	21.778	21.754	21.802	0	1530	43	0.6949163	0.026044786	0.6949163	421.95068	0	15.814301						105	3	3	NaN	NaN	NaN	0.036982	1	18687	18687		40.435	30.824	1	14090			12794	5782	7366	7524	10144	10144					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.3626587756	2	648.362659	1294.71076	1.5181	0.00098426	-2.3792	-0.0015426	-0.8611	-0.00055831	648.3612524434791	21.898	0.24081	21.884	21.812	22.053	-0.013895	1119	79	0.9479278	0.047651827	0.94640833	383.72205	0	19.28949						606	11	4	NaN	NaN	NaN	0.054678	1	17844	17844		48.65	36.081	1	107980			12795	5782	7366	7524	10145	10145					0.0751976662756988
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.57753133926667	3	432.577531	1294.71076	0.98808	0.00042742	-0.58722	-0.00025402	0.40086	0.0001734	432.5772364048377	21.922	0.19268	21.908	21.812	22.004	-0.013897	1374	43	0.791392	0.02590108	0.7898726	480.5304	0	15.727051						144	9	2	NaN	NaN	NaN	0.51407	1	17845	17845		9.5854	3.4448	1	16621			12796	5782	7366	7524	10146	10146					0.0751976662756988
KYMPSVKVSVF	11	Unmodified	_KYMPSVKVSVF_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.854666568	2	642.854667	1283.69478	1.9595	0.0012597	-1.8698	-0.001202	0.089686	5.7655E-05	642.8530836321844	21.778	0.048178	21.778	21.754	21.802	0	1125	55	0.9442611	0.032996833	0.9442611	382.27237	0	13.358337						122	3	3	NaN	NaN	NaN	0.75376	1	18498	18498		3.9281	0.35833	1	11495			12797	2360	7367	7525	10147	10147					0.06428060390658175
KYMPSVKVSVF	11	Unmodified	_KYMPSVKVSVF_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.854666568	2	642.854667	1283.69478	1.9811	0.0012736	-2.1002	-0.0013501	-0.11903	-7.6521E-05	643.355127682046	21.946	0.12048	21.932	21.86	21.98	-0.013895	1128	55	0.9424274	0.032993257	0.94090796	381.53006	0	13.356903						122	6	2	NaN	NaN	NaN	0.69656	1	17671	17671		7.6826	1.9884	1	10857			12798	2360	7367	7525	10148	10148					0.06428060390658175
KYMSVIAEL	9	Unmodified	_KYMSVIAEL_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2860854763001	2	527.286085	1052.55762	1.6108	0.00084937	-4.592	-0.0024213	-2.9812	-0.0015719	527.284758799225	24.84	0.14479	24.84	24.791	24.936	0	1263	85	0.85970795	0.05158961	0.85970795	348.8545	0	20.934143						380	7	5	NaN	NaN	NaN	0.12866	1	10748	10748		31.675	3.8866	1	82162			12799	2377	7368	7526	10149	10149					0.0334415151110079
KYMSVIAEL	9	Unmodified						0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.286085	1052.55762	1.2142	0.00064021	-4.142	-0.002184	-2.9279	-0.0015438	527.285429849629	24.864	0.21717	24.851	24.779	24.996	-0.012392	1260	73	0.8615505	0.044214845	0.8600311	349.60217		17.94159	0.0057695	0.00025073	0.00016157	NaN	31.675	421	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81480			12800	2377	7368	7526							0.0334415151110079
KYMTAVVKL	9	Unmodified	_KYMTAVVKL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.8122704370501	2	526.81227	1051.60999	2.2707	0.0011962	-1.1572	-0.00060965	1.1134	0.00058656	526.8119793727187	18.796	0.19196	18.796	18.724	18.916	0	1254	52	0.8652351	0.031317174	0.8652351	351.10138	0	12.708099						339	9	6	NaN	NaN	NaN	0.0019904	1	10710	10710		111.05	46.498	1	186110			12801	576	7369	7527	10150	10150					0.08624734644718046
KYMTAVVKL	9	Unmodified	_KYMTAVVKL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.8122704370501	2	526.81227	1051.60999	1.6554	0.00087209	-1.2384	-0.0006524	0.41702	0.00021969	526.8118074117518	18.986	0.33644	18.972	18.852	19.188	-0.014059	1257	55	0.86339295	0.03316474	0.8618735	350.35385	0	13.457794						474	15	4	NaN	NaN	NaN	0.0040343	1	10488	10488		104.89	54.575	1	192160			12802	576	7369	7527	10151	10151					0.08624734644718046
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(49)TAVVKL	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.8097277481	2	534.809728	1067.6049	2.3055	0.001233	-3.0375	-0.0016245	-0.73199	-0.00039147	534.8084134737064	16.35	0.2398	16.35	16.302	16.542	0	1251	58	0.8670771	0.034986377	0.8670771	351.7807	0	14.194305						394	11	5	NaN	NaN	NaN	0.044153	1	11462	11462		49.394	13.159	1	141720			12803	576	7369	7528	10152	10152		57			0.07380430782109215
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(64)TAVVKL	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.8097277481	2	534.809728	1067.6049	1.7448	0.00093311	-1.7532	-0.00093761	-0.0084057	-4.4954E-06	534.8088730588834	16.467	0.23973	16.454	16.358	16.598	-0.012995	1248	52	0.8689189	0.031306982	0.86739945	352.52792	0	12.701538						433	11	5	NaN	NaN	NaN	0.026267	1	11192	11192		63.995	8.0366	1	148120			12804	576	7369	7528	10153	10153		57			0.07380430782109215
KYMYFTVVM	9	Unmodified	_KYMYFTVVM_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.29031357445	2	591.290314	1180.56607	1.504	0.00088928	-3.1543	-0.0018651	-1.6503	-0.00097582	591.2886478526368	27.277	0.26547	27.277	27.181	27.446	0	1146	97	0.93142134	0.05876237	0.93142134	377.42484	0	23.81134						471	12	5	NaN	NaN	NaN	0.089764	1	15841	15841		37.302	6.6922	1	137640			12805	3209	7370	7529	10154	10154					-0.016986178439310606
KYMYFTVVM	9	Unmodified	_KYMYFTVVM_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.29031357445	2	591.290314	1180.56607	0.994	0.00058774	-1.4144	-0.0008363	-0.42037	-0.00024856	591.2894023288453	27.325	0.19305	27.315	27.242	27.436	-0.010124	1146	88	0.93142134	0.05325049	0.9299019	377.42484	0	21.57785						398	9	5	NaN	NaN	NaN	0.055351	1	15258	15258		44.638	14.028	1	125220			12806	3209	7370	7529	10155	10155					-0.016986178439310606
KYMYFTVVM	9	Oxidation (M)	_KYM(Oxidation (M))YFTVVM_		KYM(1)YFTVVM		KYM(42)YFTVVM(-42)	0	0	1		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.2877708855	2	599.287771	1196.56099	1.743	0.0010446	-0.46145	-0.00027654	1.2816	0.00076803	599.2870579152027	25.371	0.0965	25.371	25.322	25.419	0	1137	91	0.9369253	0.05507785	0.9369253	379.59647	0	22.31485						206	5	2	NaN	NaN	NaN	0.055351	1	16352	16352		44.638	18.524	2	87139			12807	3209	7370	7530	10156	10156		355;356			-0.029429217065398916
KYMYFTVVM	9	Oxidation (M)	_KYMYFTVVM(Oxidation (M))_		KYM(0.001)YFTVVM(0.999)		KYM(-32)YFTVVM(32)	0	0	1		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.2877708855	2	599.287771	1196.56099	1.586	0.00095049	-3.8176	-0.0022878	-2.2315	-0.0013373	599.2873537616229	23.923	0.36168	23.91	23.717	24.079	-0.013048	1134	115	0.9387595	0.06978035	0.93724006	380.33963	0	28.271576						1357	16	6	NaN	NaN	NaN	0.070055	1	15707	15707		40.154	18.303	2	264010			12808	3209	7370	7530	10157	10157		355;356			-0.029429217065398916
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(64)YFTVVM(64)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2852281965501	2	607.285228	1212.5559	1.7365	0.0010545	-2.2903	-0.0013909	-0.55387	-0.00033636	607.2843815443467	21.874	0.26501	21.874	21.802	22.067	0	1143	91	0.9332562	0.05507189	0.9332562	378.05307	0	22.309113						780	12	5	NaN	NaN	NaN	0.026295	1	16780	16780		63.958	28.662	1	193090			12809	3209	7370	7531	10158	10158		355;356			-0.041872255691487226
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(53)YFTVVM(53)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.2852281965501	2	607.285228	1212.5559	1.2069	0.0007329	-1.6993	-0.001032	-0.49249	-0.00029908	607.2847849260776	21.874	0.24075	21.86	21.788	22.028	-0.013895	1146	103	0.93142134	0.06243503	0.9299019	377.30978	0	25.29181						765	11	5	NaN	NaN	NaN	0.03618	1	16113	16113		52.78	24.284	1	195170			12810	3209	7370	7531	10159	10159		355;356			-0.041872255691487226
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2796490402	2	552.279649	1102.54475	1.9739	0.0010902	-1.0349	-0.00057155	0.93904	0.00051861	552.2791776783096	22.838	0.26505	22.838	22.79	23.055	0	1248	73	0.8689189	0.04420048	0.8689189	352.3856	0	17.925262						487	12	4	NaN	NaN	NaN	0.025843	1	12939	12939		64.55	22.765	1	278140			12811	4875	7371	7532	10160	10160					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5520216137998	1	1103.55202	1102.54475	1.9984	0.0022053	-0.56428	-0.00062271	1.4341	0.0015826	1103.5510570528866	22.838	0.048283	22.838	22.838	22.887	0	102	43	1.5582114	0.024750948	1.5582114	315.96588	0	5.0188904						62	3	2	NaN	NaN	NaN	0.02857	1	12940	12940		60.982	37.647	1	4995.2			12812	4875	7371	7532	10161	10161					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2796490402	2	552.279649	1102.54475	1.8535	0.0010236	-0.94147	-0.00051996	0.912	0.00050368	552.2793076413773	22.886	0.2651	22.872	22.8	23.065	-0.01354	1248	70	0.8689189	0.04235655	0.86739945	352.3856	0	17.17746						436	12	4	NaN	NaN	NaN	0.014046	1	12605	12605		80.639	38.321	1	288870			12813	4875	7371	7532	10162	10162					-0.0024254355678294814
KYNANFVTF	9	Unmodified						0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1103.55202	1102.54475	2.2002	0.0024281	-0.58141	-0.00064162	1.6188	0.0017864	1103.5521850222285	22.886	0.048244	22.872	22.848	22.896	-0.01354	99	43	1.5599792	0.024748325	1.5584598	316.32434		5.018341	0.01698	-1.2612E-05	0.0001242	NaN	60.982	62	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4190.6			12814	4875	7371	7532							-0.0024254355678294814
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2692813191501	2	559.269281	1116.52401	2.3721	0.0013266	3.0216	0.0016899	5.3937	0.0030165	559.2713553693632	26.263	0.26546	26.263	26.215	26.481	0	1209	103	0.892844	0.06257683	0.892844	362.03232	0	25.37378						578	12	5	NaN	NaN	NaN	0.0018626	1	13521	13521		111.43	75.198	1	306860			12815	420	7372	7533	10163	10163					-0.029591339364287705
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2692813191501	2	559.269281	1116.52401	2.0531	0.0011482	1.5806	0.00088397	3.6337	0.0020322	559.270922878857	26.287	0.33779	26.276	26.228	26.566	-0.011137	1209	115	0.892844	0.06996149	0.8913246	362.03232	0	28.368134						565	15	5	NaN	NaN	NaN	0.013281	1	13131	13131		82.96	50.507	1	274950			12816	420	7372	7533	10164	10164					-0.029591339364287705
KYNDTFWKEF	10	Unmodified	_KYNDTFWKEF_					0	0	0		ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3273275143	2	689.327328	1376.6401	2.3344	0.0016091	-0.47089	-0.0003246	1.8635	0.0012845	689.3266718838861	23.2	0.19289	23.2	23.152	23.345	0	1086	67	0.9680805	0.040277243	0.9680805	391.63358	0	16.294037						346	9	4	NaN	NaN	NaN	0.0028944	1	19864	19864		82.991	43.952	1	78098			12817	4500	7373	7534	10165	10165					-0.03315235156401286
KYNDTFWKEF	10	Unmodified	_KYNDTFWKEF_					0	0	0		ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3273275143	2	689.327328	1376.6401	1.8105	0.001248	-1.1076	-0.00076349	0.70288	0.00048451	689.3260973996344	23.32	0.19302	23.307	23.234	23.427	-0.013296	1083	73	0.9699114	0.04392463	0.96839195	392.37427	0	17.769562						290	9	4	NaN	NaN	NaN	3.3573E-05	1	18928	18928		114.78	78.55	1	62121			12818	4500	7373	7534	10166	10166					-0.03315235156401286
KYNDTFWKEF	10	Unmodified	_KYNDTFWKEF_					0	0	0		ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENST00000548462.5_1_12:104324233-104336580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.8873104984	3	459.88731	1376.6401	1.5908	0.00073159	-0.57311	-0.00026357	1.0177	0.00046803	459.8860355093493	23.32	0.072367	23.307	23.283	23.355	-0.013296	1479	67	0.72651637	0.040834308	0.7249969	440.86127	0	24.77887						82	4	2	NaN	NaN	NaN	0.4422	1	18929	18929		17.995	9.5385	1	6391.6			12819	4500	7373	7534	10167	10167					-0.03315235156401286
KYNHLNLFLF	10	Unmodified	_KYNHLNLFLF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.85859785295	2	654.858598	1307.70264	1.3172	0.00086259	-1.2455	-0.0008156	0.071746	4.6983E-05	654.8572777710141	27.905	0.12066	27.905	27.881	28.001	0	1083	37	0.9699114	0.021969438	0.9699114	392.57986	0	8.892303						90	6	2	NaN	NaN	NaN	0.68669	1	18898	18898		8.962	5.0339	1	9027.2			12820	1431	7374	7535	10168	10168					0.061099557024363094
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3058637907001	2	602.305864	1202.59717	2.0182	0.0012156	-3.4512	-0.0020787	-1.433	-0.00086313	602.3040499307582	25.974	0.21723	25.974	25.95	26.167	0	1161	94	0.9222442	0.05693525	0.9222442	373.62704	0	23.066101						314	10	3	NaN	NaN	NaN	0.12104	1	16550	16550		44.638	21.304	1	123200			12821	3821	7375	7536	10169	10169					0.0039799478618078865
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3058637907001	2	602.305864	1202.59717	1.8804	0.0011325	-2.2436	-0.0013514	-0.36328	-0.00021881	602.304679372188	26.022	0.19312	26.011	25.962	26.156	-0.011135	1161	61	0.9222442	0.036726475	0.92072475	373.627	0	14.878906						204	9	2	NaN	NaN	NaN	0.10945	1	15898	15898		47.136	23.801	1	106710			12822	3821	7375	7536	10170	10170					0.0039799478618078865
KYNYYPAR	8	Unmodified	_KYNYYPAR_					0	0	0			REV__ENSG00000117151|ENST00000370630|CTBS	REV__ENSG00000117151|ENST00000370630|CTBS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7719911836	2	537.771991	1073.52943	1.08	0.00058078	-1.9269	-0.0010363	-0.84695	-0.00045547	537.7705255577654	29.859	0.072388	29.852	29.828	29.9	-0.0070648	1281	37	0.84864825	0.022126555	0.8471288	344.27975	0	8.976288						65	4	2	NaN	NaN	NaN	0.77489	1	11407	11407		12.588	1.4175	1	7018.3	+		12823	9239	7376	7537	10171	10171					-0.0043941035396528605
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	362.88171973966666	3	362.88172	1085.62333	2.0459	0.0007424	-1.7977	-0.00065234	0.24818	9.0059E-05	362.8815144518511	18.82	0.14401	18.82	18.748	18.892	0	1536	76	0.69119483	0.046506047	0.69119483	420.54178	0	28.295532						238	7	3	NaN	NaN	NaN	0.2961	1	12214	12214		17.198	5.6371	1	23109			12824	506	7377	7538	10172	10172					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8189413762001	2	543.818941	1085.62333	2.4518	0.0013333	-1.2824	-0.00069737	1.1694	0.00063594	543.8181754808835	18.82	0.40792	18.82	18.676	19.084	0	1266	103	0.85786515	0.06260389	0.85786515	347.96976	0	25.393555						844	18	5	NaN	NaN	NaN	0.0080618	1	12216	12216		96.341	59.039	1	517340			12825	506	7377	7538	10173	10173					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	362.88171973966666	3	362.88172	1085.62333	1.8653	0.00067687	-1.3682	-0.00049648	0.49709	0.00018038	362.8811601412059	18.914	0.16822	18.9	18.828	18.996	-0.014059	1536	79	0.69119483	0.048353136	0.6896754	420.54178	0	29.419373						188	8	2	NaN	NaN	NaN	0.33629	1	11906	11906		14.854	0	1	19573			12826	506	7377	7538	10174	10174					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.8189413762001	2	543.818941	1085.62333	2.2483	0.0012227	-0.95244	-0.00051795	1.2959	0.00070472	543.8183339451233	18.914	0.38438	18.9	18.756	19.14	-0.014059	1266	106	0.85786515	0.06444168	0.8563457	347.96976	0	26.139038						836	17	5	NaN	NaN	NaN	0.0014219	1	11908	11908		112.76	60.137	1	526800			12827	506	7377	7538	10175	10175					0.08394308748324875
KYPDRVPVI	9	Unmodified						0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.818941	1085.62333	2.6655	0.0014495	-3.2535	-0.0017693	-0.588	-0.00031976	544.3178731692915	19.202	0.072086	19.188	19.188	19.26	-0.014141	1272	25	0.854179	0.014744699	0.8526596	346.47458		5.980774	0.18385	-0.0021026	-0.0026028	NaN	96.341	36	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2259			12828	506	7377	7538							0.08394308748324875
KYPENDLFRKL	11	Unmodified	_KYPENDLFRKL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.9295096640999	3	474.92951	1421.7667	1.4538	0.00069045	-1.9449	-0.00092369	-0.4911	-0.00023324	474.9282919942599	19.324	0.19201	19.324	19.252	19.444	0	1389	46	0.7821392	0.027767718	0.7821392	474.46445	0	16.844574						181	9	3	NaN	NaN	NaN	0.012494	1	20233	20233		66.866	46.963	1	27727			12829	7911	7378	7539	10176	10176					0.07268691068702537
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.81332468205	2	585.813325	1169.6121	2.0411	0.0011957	-2.4712	-0.0014476	-0.43006	-0.00025193	585.8115655035924	30.873	0.65162	30.873	30.56	31.211	0	1170	115	0.91673553	0.06981051	0.91673553	371.5141	0	28.29123						2218	28	5	NaN	NaN	NaN	0.024221	1	15480	15480		66.656	22.018	1	2022800			12830	5964	7379	7540	10177	10177					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.81332468205	2	585.813325	1169.6121	3.266	0.0019133	-2.5873	-0.0015157	0.6787	0.00039759	585.8115133298257	30.029	0.74816	30.029	29.787	30.535	0	1164	373	0.9204082	0.22874242	0.9204082	373.00247	0	92.699646						4940	32	6	NaN	NaN	NaN	0.032764	1	15481	15481		55.494	0.080568	1	15321000			12831	5964	7379	7540	10178	10178					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.81332468205	2	585.813325	1169.6121	1.5587	0.00091308	0.86604	0.00050734	2.4247	0.0014204	585.8147782352478	32.587	0.14481	32.587	32.514	32.659	0	1176	61	0.9130621	0.036746264	0.9130621	370.0254	0	14.891724						175	7	3	NaN	NaN	NaN	0.25548	1	15482	15482		21.771	1.2156	1	21955			12832	5964	7379	7540	10179	10179					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	0.93249	0.00054627	-4.2114	-0.0024671	-3.2789	-0.0019208	585.8113390066741	33.816	0.096584	33.814	33.766	33.863	-0.0018463	1167	46	0.91857195	0.027549326	0.9170525	372.25833	0	11.164551						112	5	3	NaN	NaN	NaN	0.2961	1	14936	14936		19.164	0	1	8001.3			12833	5964	7379	7540	10180	10180					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	3.2455	0.0019013	-5.1457	-0.0030144	-1.9002	-0.0011132	585.8098283734787	38.874	0.024033	38.879	38.879	38.903	0.0046844	1176	22	0.9130621	0.012860477	0.91154265	370.02542	0	5.2118225						23	2	2	NaN	NaN	NaN	0.67312	1	14939	14939		1.5054	0.17424	1	1248.1			12834	5964	7379	7540	10181	10181					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	2.1249	0.0012448	-2.4888	-0.001458	-0.3639	-0.00021318	586.3133215533295	30.92	0.96529	30.915	30.578	31.543	-0.0050716	1167	127	0.91857195	0.07716733	0.9170525	372.25833	0	31.272644						2190	41	3	NaN	NaN	NaN	0.041983	1	14942	14942		50.315	10.856	1	1878400			12835	5964	7379	7540	10182	10182					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	2.7929	0.0016361	-2.4791	-0.0014523	0.31379	0.00018382	585.811661995636	30.052	0.86866	30.045	29.683	30.552	-0.0064106	1161	361	0.9222442	0.22133958	0.92072475	373.74655	0	89.699554						5317	37	6	NaN	NaN	NaN	0.02857	1	14943	14943		60.982	13.5	1	14950000			12836	5964	7379	7540	10183	10183					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	1.0533	0.00061702	-0.69236	-0.00040559	0.36091	0.00021143	585.8129368278256	29.979	0.096504	29.973	29.901	29.997	-0.0064087	1359	163	0.8006399	0.099925995	0.7991205	324.46545	0	40.495758						151	5	2	NaN	NaN	NaN	0.10945	1	14944	14944		34.454	8.339	1	17095			12837	5964	7379	7540	10184	10184					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.81332468205	2	585.813325	1169.6121	0.9563	0.00056021	-0.20407	-0.00011954	0.75223	0.00044067	586.3137290010689	32.417	0.072392	32.414	32.341	32.414	-0.0031052	1170	49	0.91673553	0.029387534	0.9152161	371.5141	0	11.909515						76	4	2	NaN	NaN	NaN	0.35794	1	14945	14945		15.463	0	1	10229			12838	5964	7379	7540	10185	10185					0.03407486654191416
KYPENFFLL	9	Unmodified						0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.813325	1169.6121	1.3597	0.00079651	-1.5881	-0.00093033	-0.22844	-0.00013382	585.8110447610792	33.962	0.024124	33.962	33.962	33.986	0	1170	34	0.91673553	0.020202816	0.91673553	371.5141		8.187347	0.073928	0.0020182	-0.00015849	NaN	19.164	37	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2634.1			12839	5964	7379	7540							0.03407486654191416
KYPGFLLNNF	10	Unmodified	_KYPGFLLNNF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.82422371935	2	606.824224	1211.63389	1.3774	0.00083583	-1.8128	-0.0011	-0.43541	-0.00026422	606.8232512964354	27.977	0.14476	27.977	27.929	28.074	0	1140	58	0.93509084	0.034854412	0.93509084	378.7995	0	14.119293						213	7	4	NaN	NaN	NaN	0.2358	1	16767	16767		32.453	14.654	1	23525			12840	1292	7380	7541	10186	10186					0.036542914027450024
KYPGFLLNNF	10	Unmodified						0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	606.824224	1211.63389	0.63627	0.00038611	-1.9128	-0.0011607	-1.2765	-0.00077464	607.3247326427669	28.001	0.14479	27.992	27.943	28.088	-0.0089798	1140	55	0.93509084	0.033025324	0.9335714	378.7995		13.378326	0.007191	-4.8776E-05	-0.00075972	NaN	32.453	192	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21983			12841	1292	7380	7541							0.036542914027450024
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.2326410236667	3	395.232641	1182.67609	1.1217	0.00044333	-1.0484	-0.00041438	0.073255	2.8953E-05	395.2323252473067	20.814	0.096386	20.814	20.79	20.887	0	1518	28	0.7023569	0.016738534	0.7023569	426.89407	0	10.173737						58	5	2	NaN	NaN	NaN	0.62851	1	15939	15939		12.15	1.2881	1	4323.5			12842	1327	7381	7542	10187	10187					0.09206266811133901
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3453233022001	2	592.345323	1182.67609	0.67396	0.00039922	-2.0243	-0.0011991	-1.3503	-0.00079985	592.3439475406987	21.031	0.21657	21.017	20.921	21.138	-0.014086	1164	43	0.9204082	0.025708497	0.91888875	372.95444	0	10.417236						229	10	3	NaN	NaN	NaN	0.3939	1	15330	15330		19.336	4.161	1	22426			12843	1327	7381	7542	10188	10188					0.09206266811133901
KYPGHLAAITL	11	Unmodified						0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.345323	1182.67609	1.149	0.0006806	-2.6494	-0.0015693	-1.5004	-0.00088873	592.3435920184087	20.838	0.14458	20.838	20.79	20.935	0	1164	46	0.9204082	0.027543366	0.9204082	372.95444		11.160706	-0.089389	-0.00023976	0.00075972	NaN	19.336	168	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17974			12844	1327	7381	7542							0.09206266811133901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.2183318746	3	393.218332	1176.63317	2.1827	0.00085829	-5.8362	-0.0022949	-3.6535	-0.0014366	393.2152131874145	25.226	0.072412	25.214	25.141	25.214	-0.012011	1425	40	0.7599118	0.024094045	0.75839233	461.9034	0	14.645294						52	4	2	NaN	NaN	NaN	0.56671	1	15147	15147		6.4299	2.4614	1	3836.2			12845	4821	7382	7543	10189	10189					0.05191496753695901
KYPHYFPVM	9	Unmodified	_KYPHYFPVM_					0	0	0		ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2942448594	2	591.294245	1180.57394	1.5758	0.00093176	-1.8209	-0.0010767	-0.24511	-0.00014493	591.293736263314	21.657	0.21679	21.657	21.561	21.778	0	1182	67	0.9093879	0.040434003	0.9093879	368.49652	0	16.38443						228	10	2	NaN	NaN	NaN	0.12945	1	15845	15845		31.561	18.558	1	33116			12846	2367	7383	7544	10190	10190					-0.009127225321435617
KYPHYFPVM	9	Unmodified	_KYPHYFPVM_					0	0	0		ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.2942448594	2	591.294245	1180.57394	1.036	0.00061259	-0.61015	-0.00036078	0.42587	0.00025181	591.293756670445	21.826	0.19259	21.812	21.715	21.908	-0.013895	1182	67	0.9093879	0.04042524	0.90786844	368.49652	0	16.38086						266	9	3	NaN	NaN	NaN	0.3389	1	15260	15260		16.417	7.4547	1	29885			12847	2367	7383	7544	10191	10191					-0.009127225321435617
KYPHYFPVM	9	Oxidation (M)	_KYPHYFPVM(Oxidation (M))_		KYPHYFPVM(1)		KYPHYFPVM(44)	0	0	1		ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.29170217045	2	599.291702	1196.56885	1.8888	0.001132	-2.2977	-0.001377	-0.40883	-0.00024501	599.2907827112994	18.772	0.35984	18.772	18.508	18.868	0	1200	85	0.89836043	0.051455915	0.89836043	363.97183	0	20.847443						416	16	4	NaN	NaN	NaN	0.056143	1	16353	16353		44.302	25.139	1	40676			12848	2367	7383	7545	10192	10192		269			-0.0215702639477513
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3056668254501	2	577.305667	1152.59678	1.9491	0.0011252	-5.0705	-0.0029272	-3.1214	-0.001802	577.3025395177877	21.464	0.28918	21.464	21.392	21.681	0	1209	85	0.892844	0.051489294	0.892844	361.89413	0	20.870026						513	13	4	NaN	NaN	NaN	0.032409	1	14892	14892		55.958	35.445	1	173120			12849	2470	7384	7546	10193	10193					0.026586198569930275
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3056668254501	2	577.305667	1152.59678	1.6971	0.00097975	-2.2692	-0.00131	-0.57214	-0.0003303	577.3042337250477	21.561	0.28896	21.547	21.499	21.788	-0.013895	1212	64	0.8910048	0.03861904	0.88948536	361.14865	0	15.653351						506	13	3	NaN	NaN	NaN	0.04743	1	14396	14396		48.002	30.033	1	155440			12850	2470	7384	7546	10194	10194					0.026586198569930275
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.8527841935501	2	551.852784	1101.69102	1.8855	0.0010405	-3.4433	-0.0019002	-1.5578	-0.00085967	552.3515201181887	22.548	0.048246	22.535	22.511	22.559	-0.01354	1200	34	0.89836043	0.02022463	0.896841	364.32895	0	8.202087						45	3	2	NaN	NaN	NaN	0.46713	1	12583	12583		10.965	2.046	1	3575.9			12851	2090	7385	7547	10195	10195					0.14423758679117782
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.82114971415	2	544.82115	1087.62775	1.1023	0.00060058	-3.0198	-0.0016452	-1.9174	-0.0010447	544.8199911801653	27.325	0.21718	27.315	27.17	27.387	-0.010124	1215	43	0.8891654	0.025753021	0.88764596	360.6575	0	10.44577						212	10	3	NaN	NaN	NaN	0.03533	1	11988	11988		53.14	7.9754	1	24724			12852	5662	7386	7548	10196	10196					0.08743773171227076
KYPLLLKEL	9	Unmodified	_KYPLLLKEL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;TIAM2|p.L1253F|1|0.25|ENSG00000146426|chr6:155248104-155248104|C/T|missense_variant;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.8549925315001	2	558.854993	1115.69543	1.7179	0.00096007	-2.6255	-0.0014673	-0.90754	-0.00050718	558.8538621161002	22.79	0.14469	22.79	22.694	22.838	0	1209	40	0.892844	0.023907006	0.892844	362.0356	0	9.69397						111	7	2	NaN	NaN	NaN	0.60736	1	13515	13515		5.1889	0	1	11146			12853	2395	7387	7549	10197	10197					0.14221223102049407
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000595897.5_1_19:42402462-42407822:+|nuORF;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000595897.5_1_19:42402462-42407822:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.8315174352001	2	537.831517	1073.64848	1.7665	0.00095009	-2.3151	-0.0012451	-0.54857	-0.00029504	537.8307263793295	26.94	0.4831	26.94	26.674	27.157	0	1212	79	0.8910048	0.04781151	0.8910048	361.46246	0	19.396118						729	21	3	NaN	NaN	NaN	0.02857	1	11731	11731		60.982	24.395	1	153510			12854	860	7388	7550	10198	10198					0.11460363550895636
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8393424673	2	568.839342	1135.66413	1.8265	0.001039	-3.2273	-0.0018358	-1.4009	-0.00079687	568.8381890205872	29.498	0.31377	29.498	29.377	29.691	0	1170	64	0.91673553	0.038573205	0.91673553	371.64352	0	15.637512						531	14	4	NaN	NaN	NaN	0.10956	1	14310	14310		34.439	6.65	1	149720			12855	3896	7389	7551	10199	10199					0.10172650067920586
KYPLNLYLL	9	Unmodified						0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.839342	1135.66413	1.1797	0.00067104	-2.3946	-0.0013622	-1.215	-0.00069114	568.8390664874274	29.521	0.36194	29.514	29.321	29.683	-0.0070648	1170	61	0.91673553	0.036734402	0.9152161	371.64352		14.89209	0.0081207	0.00060498	-0.00075972	NaN	34.439	654	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157680			12856	3896	7389	7551							0.10172650067920586
KYPNVDARL	9	Unmodified	_KYPNVDARL_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.2983731096	2	538.298373	1074.58219	1.8769	0.0010103	-0.94038	-0.0005062	0.93648	0.00050411	538.297768130601	16.422	0.1438	16.422	16.374	16.518	0	1197	40	0.9001988	0.023899257	0.9001988	365.18826	0	9.695343						97	7	2	NaN	NaN	NaN	0.25548	1	11758	11758		21.771	6.5957	1	10617			12857	3617	7390	7552	10200	10200					0.04788547708835722
KYPNVDARL	9	Unmodified	_KYPNVDARL_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2983731096	2	538.298373	1074.58219	1.6685	0.00089817	-1.3501	-0.00072678	0.31838	0.00017138	538.2973546272333	16.491	0.14377	16.478	16.43	16.574	-0.012995	1197	67	0.9001988	0.04046464	0.8986794	365.18826	0	16.415497						178	7	3	NaN	NaN	NaN	0.1507	1	11452	11452		28.495	10.715	1	14059			12858	3617	7390	7552	10201	10201					0.04788547708835722
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.56573159650003	3	379.565732	1135.67537	1.6345	0.00062041	-0.93018	-0.00035306	0.70434	0.00026734	379.5653015446578	16.302	0.21601	16.302	16.086	16.302	0	1455	34	0.7413668	0.020409405	0.7413668	450.819	0	12.410797						121	10	2	NaN	NaN	NaN	0.055351	1	14313	14313		39.039	26.469	1	15312			12859	4634	7391	7553	10202	10202					0.11295472162078113
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.56573159650003	3	379.565732	1135.67537	1.8179	0.00069	-2.0944	-0.00079496	-0.27653	-0.00010496	379.56477252446376	16.946	0.14378	16.933	16.837	16.981	-0.013294	1455	37	0.7413668	0.02226597	0.73984736	450.81903	0	13.539764						112	7	3	NaN	NaN	NaN	0.089764	1	13846	13846		27.046	17.435	1	11864			12860	4634	7391	7553	10203	10203					0.11295472162078113
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2973104771	2	566.29731	1130.58007	1.6883	0.00095607	-3.5355	-0.0020021	-1.8472	-0.0010461	566.2958212204555	31.332	0.94127	31.332	30.97	31.911	0	1200	133	0.89836043	0.08097303	0.89836043	364.2139	0	32.828156						2918	40	6	NaN	NaN	NaN	0.032826	1	14107	14107		55.413	29.298	1	1013700			12861	2966	7392	7554	10204	10204					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2973104771	2	566.29731	1130.58007	2.6032	0.0014742	-2.0124	-0.0011396	0.59079	0.00033456	566.2956462571153	30.511	0.50678	30.511	30.391	30.897	0	1200	235	0.89836043	0.14372987	0.89836043	364.2139	0	58.271057						2973	22	6	NaN	NaN	NaN	1.0592E-07	1	14109	14109		137.62	97.463	1	6070800			12862	2966	7392	7554	10205	10205					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2973104771	2	566.29731	1130.58007	1.5389	0.00087148	-3.4197	-0.0019365	-1.8807	-0.0010651	566.2955185583896	31.427	0.77229	31.423	31.085	31.857	-0.0044155	1197	133	0.9001988	0.08096427	0.8986794	364.95923	0	32.824585						2877	33	5	NaN	NaN	NaN	0.021751	1	13651	13651		69.782	38.221	1	1076300			12863	2966	7392	7554	10206	10206					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1131.5873444876	1	1131.58734	1130.58007	0.72424	0.00081954	-1.2398	-0.001403	-0.51561	-0.00058346	1131.5865243670753	30.534	0.19304	30.529	30.456	30.649	-0.0057545	87	82	1.5670487	0.047696114	1.5655292	317.6604	0	9.66864						306	9	2	NaN	NaN	NaN	0.62619	1	13652	13652		4.4131	2.2368	1	25649			12864	2966	7392	7554	10207	10207					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2973104771	2	566.29731	1130.58007	2.3905	0.0013537	-2.3512	-0.0013315	0.039308	2.226E-05	566.2954323180066	30.534	0.62741	30.529	30.408	31.035	-0.0057545	1197	202	0.9001988	0.123426735	0.8986794	364.95923	0	50.039764						3458	27	5	NaN	NaN	NaN	0.0052656	1	13653	13653		102.05	63.438	1	6203700			12865	2966	7392	7554	10208	10208					0.020001189710455947
KYPVDLYYL	9	Unmodified	_KYPVDLYYL_					0	0	0		ENST00000477859.1_1_7:20406589-20418951:+|nuORF;ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.31315750655	2	587.313158	1172.61176	1.5432	0.00090632	-2.6602	-0.0015624	-1.1171	-0.00065607	587.3112845679651	26.988	0.16889	26.988	26.891	27.06	0	1164	61	0.9204082	0.03673041	0.9204082	372.99136	0	14.884857						184	8	2	NaN	NaN	NaN	0.43456	1	15577	15577		17.97	6.7994	1	48962			12866	1568	7393	7555	10209	10209					0.032360669343233894
KYPVEPFTE	9	Unmodified	_KYPVEPFTE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.521968615	3	370.521969	1108.54408	2.0401	0.00075589	-3.4615	-0.0012826	-1.4215	-0.00052669	370.5212372624392	11.19	0.071905	11.183	11.111	11.183	-0.0071888	1479	49	0.72651637	0.029704094	0.7249969	441.91803	0	18.068115						61	4	2	NaN	NaN	NaN	0.41766	1	12849	12849		11.739	5.3089	1	4716.7		+	12867	191	7394	7556	10210	10210					-0.005853829964735269
KYPVEWAKF	9	Unmodified	_KYPVEWAKF_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.31349185755	2	584.313492	1166.61243	1.534	0.00089631	-2.5014	-0.0014616	-0.96747	-0.00056531	584.3120997181445	21.657	0.21674	21.643	21.523	21.74	-0.013897	1218	73	0.8873258	0.0441432	0.8858064	359.60635	0	17.889893						246	10	3	NaN	NaN	NaN	0.40649	1	14836	14836		13.463	3.7171	1	31666			12868	1475	7395	7557	10211	10211					0.035789063740367055
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.3504086801001	2	582.350409	1162.68626	2.0052	0.0011677	-1.7949	-0.0010453	0.21033	0.00012249	582.8508610922936	21.946	0.21682	21.946	21.802	22.019	0	1179	40	0.9112251	0.02388376	0.9112251	369.30658	0	9.679779						176	10	3	NaN	NaN	NaN	0.10945	1	15243	15243		39.459	12.163	1	19848			12869	4743	7396	7558	10212	10212					0.11142874536380987
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.3504086801001	2	582.350409	1162.68626	1.4527	0.00084597	-1.9534	-0.0011376	-0.50076	-0.00029162	582.3499045673562	22.042	0.096277	22.029	21.956	22.053	-0.013731	1176	43	0.9130621	0.025716841	0.91154265	370.05112	0	10.422668						92	5	2	NaN	NaN	NaN	0.12104	1	14722	14722		37.302	20.718	1	11716			12870	4743	7396	7558	10213	10213					0.11142874536380987
KYPYVAVML	9	Oxidation (M)	_KYPYVAVM(Oxidation (M))L_		KYPYVAVM(1)L		KYPYVAVM(50)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.29645319735	2	550.296453	1098.57835	1.5932	0.00087674	-1.8752	-0.0010319	-0.282	-0.00015518	550.2961358657093	23.85	0.16877	23.837	23.789	23.958	-0.013048	1230	67	0.8799654	0.040495276	0.878446	356.88138	0	16.42334						336	8	3	NaN	NaN	NaN	0.043119	1	12462	12462		49.833	36.83	1	47296			12871	5543	7397	7559	10214	10214		570			0.033007418907800457
KYQAECSQF	9	Unmodified	_KYQAECSQF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2449489431	2	552.244949	1102.47534	2.3841	0.0013166	-2.1835	-0.0012058	0.20063	0.0001108	552.243513004798	15.891	0.047857	15.879	15.855	15.903	-0.012611	1263	46	0.85970795	0.027641773	0.8581885	348.65042	0	11.209991						55	3	2	NaN	NaN	NaN	0.25424	1	12588	12588		21.85	13.573	1	5115.5			12872	1143	7398	7560	10215	10215					-0.07179370567837395
KYQAECSQF	9	Unmodified	_KYQAECSQF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2449489431	2	552.244949	1102.47534	2.3918	0.0013209	-0.29766	-0.00016438	2.0941	0.0011565	552.7458455424843	15.987	0.09581	15.975	15.927	16.023	-0.012611	1263	31	0.85970795	0.018426836	0.8581885	348.65042	0	7.4729004						67	5	2	NaN	NaN	NaN	0.56377	1	12589	12589		6.9844	1.5185	1	5604.1			12873	1143	7398	7560	10216	10216					-0.07179370567837395
KYQAIGAYYI	10	Unmodified	_KYQAIGAYYI_					0	0	0		PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant;ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3162315117501	2	595.316232	1188.61791	1.784	0.0010621	2.5183	0.0014992	4.3023	0.0025613	595.3175881497084	22.959	0.24084	22.959	22.863	23.103	0	1152	88	0.92775106	0.05321604	0.92775106	375.90814	0	21.562195						469	11	5	NaN	NaN	NaN	0.22448	1	16123	16123		33.425	17.963	1	76377			12874	920	7399	7561	10217	10217					0.031145851658493484
KYQAIGAYYI	10	Unmodified	_KYQAIGAYYI_					0	0	0		PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant;ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3162315117501	2	595.316232	1188.61791	1.1991	0.00071383	-1.4215	-0.00084626	-0.22245	-0.00013243	595.3157070331515	23.007	0.19269	22.993	22.945	23.137	-0.01354	1125	85	0.9442611	0.051383734	0.94274163	382.59772	0	20.819794						336	9	3	NaN	NaN	NaN	0.37681	1	15512	15512		24.562	9.0993	1	50431			12875	920	7399	7561	10218	10218					0.031145851658493484
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENST00000478813.1_1_8:81177882-81177960:-|nuORF;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENSG00000142541|ENST00000391857|RPL13A	ENST00000478813.1_1_8:81177882-81177960:-|nuORF	ENST00000478813.1_1_8:81177882-81177960:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.78202455365005	2	497.782025	993.549496	2.0746	0.0010327	-1.015	-0.00050526	1.0596	0.00052746	497.7815259316283	17.669	0.14382	17.669	17.645	17.789	0	1293	46	0.84127116	0.027671635	0.84127116	341.63483	0	11.237274						225	7	4	NaN	NaN	NaN	0.026295	1	8348	8348		63.958	13.997	1	44178			12876	3378	7400	7562	10219	10219					0.052463405860066814
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENST00000478813.1_1_8:81177882-81177960:-|nuORF;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENSG00000142541|ENST00000391857|RPL13A	ENST00000478813.1_1_8:81177882-81177960:-|nuORF	ENST00000478813.1_1_8:81177882-81177960:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.78202455365005	2	497.782025	993.549496	1.525	0.00075912	-1.1742	-0.0005845	0.3508	0.00017462	497.78142465757196	17.714	0.19175	17.7	17.652	17.844	-0.013784	1293	49	0.84127116	0.029518008	0.8397517	341.63483	0	11.987091						237	9	4	NaN	NaN	NaN	0.042816	1	8185	8185		49.961	5.6589	1	45936			12877	3378	7400	7562	10220	10220					0.052463405860066814
KYQEDFENMKD	11	Unmodified	_KYQEDFENMKD_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.8783747990666	3	482.878375	1445.61329	2.1663	0.0010461	-2.9919	-0.0014447	-0.82555	-0.00039864	483.2118142929164	18.82	0.096027	18.82	18.772	18.868	0	1407	43	0.77102906	0.025926352	0.77102906	467.65057	0	15.725037						86	5	2	NaN	NaN	NaN	0.77466	1	20363	20363		0.33451	0	1	7985.4			12878	5292	7401	7563	10221	10221					-0.09168711829897802
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.7827528351501	2	628.782753	1255.55095	1.9447	0.0012228	-1.5556	-0.00097813	0.3891	0.00024466	628.7820469204358	17.717	0.095867	17.717	17.693	17.789	0	1125	37	0.9442611	0.022002578	0.9442611	382.3636	0	8.909607						111	5	3	NaN	NaN	NaN	0.024359	1	17902	17902		66.481	41.919	1	12075			12879	825	7402	7564	10222	10222					-0.06660070115890449
KYQEGLITL	9	Unmodified	_KYQEGLITL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.8029569610001	2	532.802957	1063.59136	2.7113	0.0014446	-2.2068	-0.0011758	0.50453	0.00026882	532.8018771795153	23.417	0.24108	23.417	23.345	23.586	0	1227	100	0.88180584	0.060765862	0.88180584	357.77347	0	24.654388						782	11	5	NaN	NaN	NaN	0.0034808	1	11295	11295		106.56	29.819	1	772770			12880	7960	7403	7565	10223	10223					0.062108962745242025
KYQEGLITL	9	Unmodified	_KYQEGLITL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.8029569610001	2	532.802957	1063.59136	2.1495	0.0011453	-0.63009	-0.00033571	1.5194	0.00080954	532.8027312570715	23.441	0.21715	23.427	23.379	23.596	-0.013294	1227	106	0.88180584	0.064448655	0.8802864	357.77344	0	26.14862						849	10	5	NaN	NaN	NaN	0.0012818	1	11033	11033		113.18	30.223	1	766250			12881	7960	7403	7565	10224	10224					0.062108962745242025
KYQEIPFYHI	10	Unmodified	_KYQEIPFYHI_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3480629564001	2	669.348063	1336.68157	1.7317	0.0011591	-1.7254	-0.0011549	0.0063293	4.2365E-06	669.3463932901776	22.742	0.072371	22.742	22.718	22.79	0	1074	43	0.9754029	0.025625527	0.9754029	394.71307	0	10.3697815						93	4	2	NaN	NaN	NaN	0.011581	1	19359	19359		69.233	39.527	1	11082			12882	1640	7404	7566	10225	10225					0.026699456029518842
KYQEIPFYHI	10	Unmodified	_KYQEIPFYHI_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3480629564001	2	669.348063	1336.68157	1.5466	0.0010352	-3.0115	-0.0020157	-1.4649	-0.0009805	669.34443556205	22.838	0.1446	22.824	22.776	22.921	-0.01354	1074	61	0.9754029	0.036619663	0.97388345	394.7131	0	14.818756						129	7	3	NaN	NaN	NaN	0.044307	1	18494	18494		53.652	33.138	1	9738.3			12883	1640	7404	7566	10226	10226					0.026699456029518842
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.32405654385	2	584.324057	1166.63356	2.5084	0.0014657	-2.1117	-0.0012339	0.39669	0.00023179	584.322675549726	26.336	0.24135	26.336	26.288	26.529	0	1182	64	0.9093879	0.038589835	0.9093879	368.54736	0	15.639282						395	11	5	NaN	NaN	NaN	0.011206	1	15373	15373		89.256	27.984	1	123830			12884	3237	7405	7567	10227	10227					0.05690871682895704
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.32405654385	2	584.324057	1166.63356	1.8382	0.0010741	-1.0203	-0.00059619	0.81786	0.0004779	584.3235128689622	26.36	0.28955	26.349	26.3	26.59	-0.011135	1182	67	0.9093879	0.04042965	0.90786844	368.54736	0	16.384918						396	13	5	NaN	NaN	NaN	0.026295	1	14840	14840		63.958	16.477	1	123630			12885	3237	7405	7567	10228	10228					0.05690871682895704
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7852955241001	2	554.785296	1107.55604	1.8321	0.0010164	-0.59682	-0.00033111	1.2353	0.0006853	554.7847115141062	15.822	0.33583	15.822	15.774	16.11	0	1242	85	0.87260187	0.051567256	0.87260187	353.85944	0	20.911652						786	15	5	NaN	NaN	NaN	0.0028258	1	13179	13179		108.53	50.332	1	414690			12886	2938	7406	7568	10229	10229					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7852955241001	2	554.785296	1107.55604	2.5678	0.0014246	-0.72311	-0.00040117	1.8447	0.0010234	554.7849312846316	15.844	0.2874	15.831	15.783	16.07	-0.012611	1242	70	0.87260187	0.04235655	0.8710824	353.85944	0	17.176514						677	13	5	NaN	NaN	NaN	0.0092442	1	12805	12805		93.929	32.658	1	447060			12887	2938	7406	7568	10230	10230					0.006562337467130419
KYQEVTNNLEF	11	Unmodified	_KYQEVTNNLEF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.8407990303	2	692.840799	1383.66705	1.7143	0.0011878	-1.2417	-0.0008603	0.47263	0.00032746	692.8403435339536	21.416	0.24085	21.416	21.368	21.609	0	1095	88	0.9625867	0.053107142	0.9625867	389.39142	0	21.483215						429	11	5	NaN	NaN	NaN	3.1018E-18	1	19923	19923		136.21	97.171	1	112010			12888	2938	7407	7569	10231	10231					-0.009441713358683046
KYQEVTNNLEF	11	Unmodified	_KYQEVTNNLEF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8407990303	2	692.840799	1383.66705	1.4609	0.0010122	-0.96164	-0.00066626	0.49926	0.00034591	692.8401161772814	21.44	0.24085	21.426	21.378	21.619	-0.014006	1095	82	0.9625867	0.04943925	0.96106726	389.39142	0	19.99945						456	11	5	NaN	NaN	NaN	9.3713E-16	1	18990	18990		123.53	78.896	1	112270			12889	2938	7407	7569	10232	10232					-0.009441713358683046
KYQEYTNEL	9	Unmodified	_KYQEYTNEL_					0	0	0		ENST00000545392.1_1_12:64890804-64891535:+|nuORF;ENSG00000183735|ENST00000331710|TBK1	ENST00000545392.1_1_12:64890804-64891535:+|nuORF	ENST00000545392.1_1_12:64890804-64891535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2825856596501	2	594.282586	1186.55062	1.5394	0.00091484	-2.0162	-0.0011982	-0.47684	-0.00028338	594.2813224084625	17.165	0.2639	17.165	17.069	17.333	0	1203	61	0.8965218	0.036762178	0.8965218	363.26187	0	14.89566						303	12	4	NaN	NaN	NaN	0.12866	1	16049	16049		31.675	13.442	1	33016			12890	5323	7408	7570	10233	10233					-0.0351948983575312
KYQEYTNEL	9	Unmodified	_KYQEYTNEL_					0	0	0		ENST00000545392.1_1_12:64890804-64891535:+|nuORF;ENSG00000183735|ENST00000331710|TBK1	ENST00000545392.1_1_12:64890804-64891535:+|nuORF	ENST00000545392.1_1_12:64890804-64891535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.2825856596501	2	594.282586	1186.55062	1.3019	0.0007737	-0.77337	-0.0004596	0.52854	0.0003141	594.2816551878582	17.186	0.071911	17.172	17.124	17.196	-0.013569	1200	61	0.89836043	0.03676611	0.896841	364.00687	0	14.897278						99	4	2	NaN	NaN	NaN	0.0092442	1	15439	15439		93.929	51.611	1	21260			12891	5323	7408	7570	10234	10234					-0.0351948983575312
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3033211017499	2	592.303321	1182.59209	1.9924	0.0011801	-3.7366	-0.0022132	-1.7442	-0.0010331	592.3019232905009	22.332	0.24103	22.332	22.236	22.477	0	1194	103	0.902037	0.062502444	0.902037	365.51065	0	25.326355						603	11	6	NaN	NaN	NaN	0.0050453	1	15922	15922		102.5	49.716	1	460310			12892	4256	7409	7571	10235	10235					0.008096909235518979
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3033211017499	2	592.303321	1182.59209	1.3711	0.00081211	-1.0124	-0.00059966	0.35868	0.00021245	592.302687349691	22.332	0.19252	22.318	22.27	22.462	-0.013731	1191	127	0.90387505	0.07719231	0.9023556	366.2554	0	31.278778						262	9	2	NaN	NaN	NaN	0.0073225	1	15320	15320		97.85	42.437	1	392820			12893	4256	7409	7571	10236	10236					0.008096909235518979
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8111163441001	2	578.811116	1155.60768	1.9599	0.0011344	-2.0928	-0.0012113	-0.13285	-7.6897E-05	578.8099311606616	21.2	0.26485	21.2	21.127	21.392	0	1182	79	0.9093879	0.047770202	0.9093879	368.58847	0	19.361969						563	12	4	NaN	NaN	NaN	2.4698E-12	1	15017	15017		151.71	101.4	1	299720			12894	713	7410	7572	10237	10237					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.2098363849334	3	386.209836	1155.60768	1.2144	0.000469	-0.54773	-0.00021154	0.66664	0.00025746	386.20969017357857	21.2	0.12045	21.2	21.175	21.296	0	1524	82	0.698637	0.050204754	0.698637	424.7476	0	30.522766						178	6	2	NaN	NaN	NaN	0.25448	1	15018	15018		14.854	4.6103	1	17589			12895	713	7410	7572	10238	10238					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.8111163441001	2	578.811116	1155.60768	1.8525	0.0010723	-2.1429	-0.0012403	-0.29038	-0.00016807	578.8098096944954	21.368	0.50553	21.354	21.234	21.739	-0.014006	1182	73	0.9093879	0.044105053	0.90786844	368.58847	0	17.876434						697	22	4	NaN	NaN	NaN	3.9799E-05	1	14514	14514		126.58	68.38	1	305320			12896	713	7410	7572	10239	10239					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.2098363849334	3	386.209836	1155.60768	1.4177	0.00054753	0.14288	5.5183E-05	1.5606	0.00060271	386.2097081414875	21.392	0.14428	21.378	21.306	21.45	-0.014006	1521	70	0.70049703	0.04275769	0.6989776	425.87845	0	25.995209						174	7	2	NaN	NaN	NaN	0.23112	1	14515	14515		15.822	1.8732	1	15101			12897	713	7410	7572	10240	10240					0.03610022231282528
KYQKHQSLE	9	Unmodified	_KYQKHQSLE_					0	0	0		SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant;nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.80656228245	2	580.806562	1159.59857	1.6621	0.00096538	1.7775	0.0010324	3.4397	0.0019978	580.8075844878622	20.164	0.24067	20.15	20.078	20.319	-0.014143	1170	46	0.91673553	0.027546287	0.9152161	371.55148	0	11.16449						354	11	4	NaN	NaN	NaN	0.21199	1	14624	14624		24.562	4.1134	1	68690			12898	4240	7411	7573	10241	10241					0.02515628874948561
KYQNRHKANE	10	Unmodified	_KYQNRHKANE_					0	0	0			REV__IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant	REV__IP6K2|p.D336*|1|0.44|ENSG00000068745|chr3:48688548-48688549|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3312671867501	2	644.331267	1286.64798	1.6695	0.0010757	-2.2653	-0.0014596	-0.59573	-0.00038385	644.3302214605734	29.207	0.19307	29.2	29.127	29.32	-0.0077209	1116	64	0.94976085	0.03849417	0.9482414	384.4895	0	15.583527						282	9	3	NaN	NaN	NaN	0.60686	1	17715	17715		14.425	3.8201	1	35637	+		12899	8555	7412	7574	10242	10242					0.016123368837497765
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3269335838	2	561.326934	1120.63931	2.0414	0.0011459	-2.4839	-0.0013943	-0.44252	-0.0002484	561.3258013069819	19.42	0.21596	19.42	19.348	19.564	0	1221	61	0.885486	0.03680587	0.885486	359.0327	0	14.923462						336	10	5	NaN	NaN	NaN	0.0023856	1	13720	13720		109.86	62.722	1	161500			12900	3216	7413	7575	10243	10243					0.08382014985227215
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.55371454473334	3	374.553715	1120.63931	1.6614	0.0006223	-1.405	-0.00052625	0.25643	9.6045E-05	374.5533362639888	19.42	0.096003	19.42	19.372	19.468	0	1533	34	0.6930556	0.020467103	0.6930556	421.5091	0	12.447876						63	5	2	NaN	NaN	NaN	0.056143	1	13721	13721		31.675	19.937	1	5444.4			12901	3216	7413	7575	10244	10244					0.08382014985227215
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.3269335838	2	561.326934	1120.63931	1.737	0.00097501	-2.4638	-0.001383	-0.7268	-0.00040797	561.3256084548889	19.611	0.3129	19.597	19.5	19.813	-0.014141	1221	61	0.885486	0.03680587	0.88396657	359.0327	0	14.923462						452	14	3	NaN	NaN	NaN	0.04947	1	13315	13315		47.136	18.24	1	155200			12902	3216	7413	7575	10245	10245					0.08382014985227215
KYQPTIQTR	9	Unmodified	_KYQPTIQTR_					0	0	0		PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000549348.1_1_12:56717093-56717665:-|nuORF;ENST00000547226.5_1_12:56716788-56717917:-|nuORF	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8169300035	2	567.81693	1133.61931	1.7905	0.0010167	4.4752	0.0025411	6.2657	0.0035578	568.3217706946194	23.875	0.072269	23.875	23.827	23.899	0	1218	76	0.8873258	0.045970082	0.8873258	359.7286	0	18.636627						93	4	2	NaN	NaN	NaN	0.39244	1	14234	14234		14.042	3.4366	1	24175			12903	2946	7414	7576	10246	10246					0.05784219254610434
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.91542341570005	3	406.915423	1217.72444	1.6237	0.00066069	-1.3374	-0.00054423	0.28622	0.00011647	406.91485338386195	16.686	0.35979	16.686	16.566	16.925	0	1437	55	0.7524962	0.03338456	0.7524962	457.21732	0	20.284454						369	16	4	NaN	NaN	NaN	0.43456	1	16940	16940		12.307	5.1763	1	78219			12904	5817	7415	7577	10247	10247					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.91542341570005	3	406.915423	1217.72444	1.6221	0.00066007	0.34364	0.00013983	1.9658	0.0007999	406.9153836679026	17.786	0.19175	17.772	17.628	17.82	-0.013786	1428	43	0.7580582	0.025951624	0.75653875	460.59677	0	15.7682495						193	9	3	NaN	NaN	NaN	0.43456	1	16258	16258		12.307	5.3223	1	23796			12905	5817	7415	7577	10248	10248					0.12428760451052767
KYRDQYNWF	9	Unmodified	_KYRDQYNWF_					0	0	0		ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5437666895999	3	440.543767	1318.60947	0.83725	0.00036885	-0.75181	-0.0003312	0.085448	3.7644E-05	440.5435252918943	20.646	0.096323	20.646	20.597	20.694	0	1494	37	0.7172283	0.022297442	0.7172283	435.41522	0	13.536346						104	5	3	NaN	NaN	NaN	0.31471	1	19090	19090		12.307	3.3651	1	10188			12906	4769	7416	7578	10249	10249					-0.03708968750788699
KYRDQYNWF	9	Unmodified	_KYRDQYNWF_					0	0	0		ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.5437666895999	3	440.543767	1318.60947	0.68572	0.00030209	0.37344	0.00016452	1.0592	0.00046661	440.54331006519317	20.815	0.24076	20.801	20.728	20.969	-0.014088	1491	43	0.7190863	0.02600807	0.71756685	436.54318	0	15.788971						153	11	2	NaN	NaN	NaN	0.2345	1	18240	18240		20.688	16.144	1	15517			12907	4769	7416	7578	10250	10250					-0.03708968750788699
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.82422371935	2	624.824224	1247.63389	2.1733	0.0013579	-3.7214	-0.0023252	-1.5481	-0.0009673	624.8217404891168	25.564	0.21711	25.564	25.515	25.732	0	1164	76	0.9204082	0.0458858	0.9204082	372.73047	0	18.582031						498	10	4	NaN	NaN	NaN	0.024221	1	17722	17722		66.656	39.36	1	120130			12908	5612	7417	7579	10251	10251					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.88524130176665	3	416.885241	1247.63389	2.0012	0.00083426	-2.4751	-0.0010318	-0.47394	-0.00019758	416.88429863985357	25.564	0.14472	25.564	25.515	25.66	0	1500	43	0.71351165	0.026019335	0.71351165	433.41397	0	15.805145						216	7	4	NaN	NaN	NaN	0.33629	1	17723	17723		10.965	0.72139	1	36276			12909	5612	7417	7579	10252	10252					0.01998291402742325
KYRPLFDYF	9	Unmodified						0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.824224	1247.63389	1.7427	0.0010889	-2.8047	-0.0017525	-1.062	-0.00066357	624.8222330784173	25.901	0.21721	25.89	25.89	26.107	-0.0116	1164	52	0.9204082	0.03121245	0.91888875	372.73047		12.639862	0.16298	0.00066555	-0.00075972	NaN	66.656	154	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44595			12910	5612	7417	7579							0.01998291402742325
KYRQKFNTL	9	Unmodified	_KYRQKFNTL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.89614033906673	3	399.89614	1196.66659	1.008	0.00040309	0.32692	0.00013073	1.3349	0.00053382	399.8959080187266	13.084	0.096036	13.084	13.06	13.156	0	1491	34	0.7190863	0.020436049	0.7190863	437.00345	0	12.419373						59	5	2	NaN	NaN	NaN	0.18779	1	16367	16367		23.086	16.278	1	5561.5			12911	5775	7418	7580	10253	10253					0.07612498525622868
KYRQQFEEL	9	Unmodified	_KYRQQFEEL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.8196696577	2	620.81967	1239.62479	1.6395	0.0010178	-1.619	-0.0010051	0.02054	1.2752E-05	620.8196532977595	16.275	0.14385	16.262	16.214	16.358	-0.012993	1161	43	0.9222442	0.025705755	0.92072475	373.5004	0	10.4105835						102	7	2	NaN	NaN	NaN	0.3106	1	16778	16778		18.233	3.3795	1	7734.6			12912	1123	7419	7581	10254	10254					0.014558980464244087
KYRSSQIE	8	Unmodified	_KYRSSQIE_					0	0	0		ENST00000496627.5_3_15:57938801-57976617:+|nuORF	ENST00000496627.5_3_15:57938801-57976617:+|nuORF	ENST00000496627.5_3_15:57938801-57976617:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.76690580570005	2	505.766906	1009.51926	1.343	0.00067923	2.9452	0.0014896	4.2882	0.0021688	505.7688928808705	20.501	0.12027	20.487	20.415	20.535	-0.014143	1536	37	0.69119483	0.022331417	0.6896754	280.62912	0	9.066681						94	6	2	NaN	NaN	NaN	0.8438	1	8789	8789		3.2116	0.058268	1	6580			12913	7294	7420	7582	10255	10255					0.014879819208204026
KYRSSQIE	8	Unmodified						0	0	0		ENST00000496627.5_3_15:57938801-57976617:+|nuORF	ENST00000496627.5_3_15:57938801-57976617:+|nuORF	ENST00000496627.5_3_15:57938801-57976617:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	505.766906	1009.51926	1.6319	0.00082534	1.5251	0.00077135	3.157	0.0015967	505.76781926401577	20.309	0.072132	20.309	20.285	20.357	0	1536	37	0.69119483	0.022336245	0.69119483	280.62912		9.068665	-0.089182	-0.00086708	0.00075972	NaN	3.2116	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4527.1			12914	7294	7420	7582							0.014879819208204026
KYSDITIMF	9	Unmodified	_KYSDITIMF_					0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.28354278735	2	559.283543	1116.55253	1.5347	0.00085833	-1.3748	-0.00076889	0.15992	8.9441E-05	559.2833797285831	27.133	0.16891	27.133	27.084	27.253	0	1218	61	0.8873258	0.036793947	0.8873258	359.79468	0	14.919281						266	8	4	NaN	NaN	NaN	0.059222	1	13530	13530		42.995	15.206	1	125940			12915	2619	7421	7583	10256	10256					-0.0010815235150403169
KYSDITIMF	9	Unmodified	_KYSDITIMF_					0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.28354278735	2	559.283543	1116.55253	1.2865	0.00071953	-0.8417	-0.00047075	0.44482	0.00024878	559.2838950464446	27.156	0.16892	27.146	27.122	27.291	-0.010126	1218	82	0.8873258	0.049690664	0.8858064	359.79468	0	20.148682						293	8	3	NaN	NaN	NaN	0.024221	1	13136	13136		66.656	43.322	1	114960			12916	2619	7421	7583	10257	10257					-0.0010815235150403169
KYSDITIMF	9	Unmodified						0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.283543	1116.55253	1.3451	0.0007523	3.8982	0.0021802	5.2434	0.0029325	559.2834658761199	26.77	0.097002	26.77	26.746	26.843	0	1209	49	0.892844	0.029431999	0.892844	362.0322		11.934143	-0.18781	0.0043469	0.0035188	NaN	66.656	106	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8655.4			12917	2619	7421	7583							-0.0010815235150403169
KYSDITIMF	9	Unmodified						0	0	0		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.283543	1116.55253	1.3927	0.00077891	-0.66798	-0.00037359	0.7247	0.00040532	559.7827807538916	27.349	0.096523	27.339	27.339	27.436	-0.010126	1224	46	0.883646	0.027605891	0.88212657	358.30258		11.193695	0.10314	0.00066331	-0.0025996	NaN	42.995	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5856.2			12918	2619	7421	7583							-0.0010815235150403169
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2793146892001	2	543.279315	1084.54408	2.1801	0.0011844	-1.6541	-0.00089864	0.52603	0.00028578	543.2785660132428	23.224	0.16879	23.224	23.2	23.369	0	1257	106	0.86339295	0.064448655	0.86339295	350.2163	0	26.14215						343	8	4	NaN	NaN	NaN	0.048656	1	12166	12166		47.482	7.3277	1	163420			12919	769	7422	7584	10258	10258					0.005186170035358373
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2793146892001	2	543.279315	1084.54408	2.0662	0.0011225	-1.3501	-0.00073348	0.71608	0.00038903	543.2785037751011	23.272	0.16889	23.258	23.21	23.379	-0.013294	1257	103	0.86339295	0.06261742	0.8618735	350.2163	0	25.399353						464	8	5	NaN	NaN	NaN	0.01966	1	11851	11851		72.428	27.79	1	174130			12920	769	7422	7584	10259	10259					0.005186170035358373
KYSFLPYQL	9	Unmodified	_KYSFLPYQL_					0	0	0		ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR	ENSG00000103429|ENST00000261658|BFAR	ENSG00000103429|ENST00000261658|BFAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.81332468205	2	579.813325	1157.6121	1.5663	0.00090814	-2.6732	-0.0015499	-1.1069	-0.0006418	579.8118456871599	27.229	0.096481	27.229	27.205	27.302	0	1185	52	0.90755045	0.031242788	0.90755045	367.8362	0	12.662903						165	5	4	NaN	NaN	NaN	0.2961	1	15073	15073		19.164	0.045272	1	30564			12921	1441	7423	7585	10260	10260					0.039594866541847296
KYSFWLTTI	9	Unmodified	_KYSFWLTTI_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.81332468205	2	579.813325	1157.6121	1.636	0.00094855	-1.3538	-0.00078496	0.28215	0.00016359	579.8126963465246	29.522	0.16891	29.522	29.498	29.667	0	1197	67	0.9001988	0.040447116	0.9001988	364.85654	0	16.393494						185	8	3	NaN	NaN	NaN	0.13999	1	15075	15075		30.035	8.2004	1	33271			12922	2903	7424	7586	10261	10261					0.039594866541847296
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.3056668254501	2	535.305667	1068.59678	3.0562	0.001636	-1.0791	-0.00057766	1.977	0.0010583	535.3053308642033	18.101	0.43171	18.101	18.053	18.484	0	1245	103	0.87076044	0.06263095	0.87076044	353.27087	0	25.409607						925	19	6	NaN	NaN	NaN	5.0585999999999996E-26	1	11511	11511		173.75	107.09	1	1011100			12923	3433	7425	7587	10262	10262					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.3056668254501	2	535.305667	1068.59678	2.6037	0.0013938	-1.3748	-0.00073595	1.2289	0.00065785	535.3051535632854	18.314	0.43202	18.3	18.156	18.588	-0.01395	1245	79	0.87076044	0.047883928	0.869241	353.2709	0	19.426666						1085	19	5	NaN	NaN	NaN	8.9076E-05	1	11227	11227		123.58	70.797	1	1114100			12924	3433	7425	7587	10263	10263					0.06522619856991696
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENST00000474991.1_1_1:153580188-153585458:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8424164725001	2	546.842416	1091.67028	1.4678	0.00080265	-1.8443	-0.0010085	-0.37647	-0.00020587	546.8411346853686	13.3	0.14413	13.3	13.252	13.397	0	1221	40	0.885486	0.023917377	0.885486	359.14847	0	9.700745						111	7	2	NaN	NaN	NaN	0.023815	1	12484	12484		74.794	28.968	1	10812			12925	5558	7426	7588	10264	10264					0.12811168299458586
KYSLVLLRT	9	Unmodified	_KYSLVLLRT_					0	0	0			REV__ENST00000527406.1_1_11:9779925-9802076:+|nuORF	REV__ENST00000527406.1_1_11:9779925-9802076:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.8973698038667	3	364.89737	1091.67028	1.7567	0.00064103	-2.4321	-0.00088747	-0.67539	-0.00024645	364.8966664548009	13.3	0.24017	13.3	13.228	13.469	0	1440	37	0.7506418	0.02225393	0.7506418	456.6793	0	13.53894						230	11	3	NaN	NaN	NaN	0.19435	1	12483	12483		25.694	1.201	1	44351	+		12926	12633	7427	7589	10265	10265					0.12811168299458586
KYSLVLLRT	9	Unmodified						0	0	0			REV__ENST00000527406.1_1_11:9779925-9802076:+|nuORF	REV__ENST00000527406.1_1_11:9779925-9802076:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	364.89737	1091.67028	1.7567	0.00064103	-2.4321	-0.00088747	-0.67539	-0.00024645	364.8966664548009	13.3	0.24017	13.3	13.228	13.469	0	1440	37	0.7506418	0.02225393	0.7506418	456.6793		13.53894	0	0	0	NaN	25.694	230	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44351	+		12927	12633	7427	7589							0.12811168299458586
KYSMDTYVF	9	Unmodified	_KYSMDTYVF_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.2653500342	2	577.26535	1152.51615	1.7833	0.0010294	0.89651	0.00051752	2.6798	0.001547	577.2660675910496	23.706	0.09642	23.706	23.682	23.778	0	1200	64	0.89836043	0.038610697	0.89836043	364.13037	0	15.649994						109	5	2	NaN	NaN	NaN	0.54912	1	14876	14876		7.5876	0	1	19639			12928	3722	7428	7590	10266	10266					-0.054010292482416844
KYSNMEQSLF	10	Unmodified	_KYSNMEQSLF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.7922632764501	2	623.792263	1245.56997	1.7632	0.0010999	-1.5403	-0.0009608	0.22294	0.00013907	623.7916752857458	21.946	0.2169	21.946	21.85	22.067	0	1158	70	0.92408	0.04222405	0.92408	374.2242	0	17.099457						332	10	4	NaN	NaN	NaN	0.15916	1	17646	17646		39.039	21.24	1	50935			12929	460	7429	7591	10267	10267					-0.04298856816512853
KYSNMEQSLF	10	Unmodified	_KYSNMEQSLF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.7922632764501	2	623.792263	1245.56997	0.86344	0.00053861	-0.18043	-0.00011255	0.68301	0.00042606	623.7922703941022	21.946	0.19268	21.932	21.884	22.077	-0.013895	1161	64	0.9222442	0.03854406	0.92072475	373.48074	0	15.609192						285	9	3	NaN	NaN	NaN	0.16973	1	16901	16901		38.131	20.332	1	46364			12930	460	7429	7591	10268	10268					-0.04298856816512853
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.28694275605	2	537.286943	1072.55933	1.6107	0.00086541	-6.7686	-0.0036367	-5.1579	-0.0027712	537.2825008802788	27.543	0.096554	27.543	27.471	27.567	0	1248	88	0.8689189	0.05344075	0.8689189	352.5072	0	21.680084						160	5	2	NaN	NaN	NaN	0.31471	1	11667	11667		17.97	4.9669	1	17260			12931	988	7430	7592	10269	10269					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5666090455	1	1073.56661	1072.55933	1.6599	0.001782	-2.1665	-0.0023259	-0.50662	-0.00054389	1073.5639153106551	26.65	0.072401	26.65	26.625	26.698	0	57	97	1.5847093	0.056531787	1.5847093	321.45007	0	11.467194						147	4	2	NaN	NaN	NaN	0.019939	1	11671	11671		72.076	38.378	1	13536			12932	988	7430	7592	10270	10270					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.28694275605	2	537.286943	1072.55933	2.2652	0.0012171	-0.3394	-0.00018235	1.9258	0.0010347	537.2865997889832	26.65	0.24182	26.65	26.601	26.843	0	1233	103	0.87812483	0.06261742	0.87812483	356.24188	0	25.402924						887	11	6	NaN	NaN	NaN	0.011693	1	11675	11675		87.778	50.476	1	474890			12933	988	7430	7592	10271	10271					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5666090455	1	1073.56661	1072.55933	1.5139	0.0016252	-0.72016	-0.00077314	0.79371	0.0008521	1073.5644102139795	26.673	0.048254	26.663	26.639	26.687	-0.010643	168	46	1.5192716	0.026576638	1.5177522	308.17636	0	5.39093						89	3	3	NaN	NaN	NaN	0.42817	1	11370	11370		12.57	2.9581	1	6191.9			12934	988	7430	7592	10272	10272					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.28694275605	2	537.286943	1072.55933	1.5128	0.00081282	0.40885	0.00021967	1.9217	0.0010325	537.287112074277	26.673	0.36197	26.663	26.566	26.928	-0.010643	1233	115	0.87812483	0.06997663	0.8766054	356.24188	0	28.388458						995	16	5	NaN	NaN	NaN	0.0042638	1	11372	11372		104.2	73.588	1	483420			12935	988	7430	7592	10273	10273					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5666090455	1	1073.56661	1072.55933	1.2249	0.0013151	1.3986	0.0015015	2.6236	0.0028166	1073.5682740630773	26.673	0.0965	26.663	26.639	26.735	-0.010643	60	79	1.582944	0.045927167	1.5814246	321.09198	0	9.316101						173	5	2	NaN	NaN	NaN	0.13999	1	11373	11373		30.035	13.619	1	15825			12936	988	7430	7592	10274	10274					0.0259552859138239
KYSPFVVSF	9	Unmodified						0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1073.56661	1072.55933	1.6907	0.0018151	-0.35412	-0.00038017	1.3366	0.001435	1073.5671636659918	26.65	0.048279	26.65	26.625	26.674	0	168	46	1.5192716	0.02657938	1.5192716	308.17636		5.3914795	-0.0065785	0.00017637	0.00075972	NaN	12.57	67	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6865.9			12937	988	7430	7592							0.0259552859138239
KYSPFVVSF	9	Unmodified						0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.286943	1072.55933	0.93748	0.0005037	-6.3827	-0.0034293	-5.4452	-0.0029256	537.2836645381385	27.542	0.12067	27.533	27.46	27.581	-0.0095501	1251	70	0.8670771	0.04237485	0.8655577	351.76		17.190826	-0.0051757	0.00024216	-0.0016806	NaN	17.97	150	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11218			12938	988	7430	7592							0.0259552859138239
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2827230454001	2	536.282723	1070.55089	1.7598	0.00094378	-1.8665	-0.001001	-0.10662	-5.7178E-05	536.2815745014117	14.357	0.16793	14.357	14.309	14.477	0	1266	43	0.85786515	0.025800347	0.85786515	348.03113	0	10.467072						178	8	3	NaN	NaN	NaN	0.13999	1	11584	11584		30.035	5.0744	1	19188			12939	3672	7431	7593	10275	10275					0.01843974674761739
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2827230454001	2	536.282723	1070.55089	0.91858	0.00049262	0.11932	6.399E-05	1.0379	0.00055661	536.2828607959648	14.524	0.23955	14.513	14.417	14.657	-0.011218	1266	46	0.85786515	0.027644694	0.8563457	348.03113	0	11.2153015						171	11	2	NaN	NaN	NaN	0.10945	1	11290	11290		34.454	1.0287	1	20265			12940	3672	7431	7593	10276	10276					0.01843974674761739
KYSTTFFMVTF	11	Unmodified	_KYSTTFFMVTF_					0	0	0		ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.33630663935	2	686.336307	1370.65806	1.2008	0.00082415	-3.4565	-0.0023723	-2.2557	-0.0015482	686.8355679100736	31.091	0.096523	31.091	31.066	31.163	0	1089	55	0.96624947	0.032957673	0.96624947	390.9098	0	13.333496						192	5	4	NaN	NaN	NaN	0.22541	1	19804	19804		28.296	3.8954	1	15591			12941	3412	7432	7594	10277	10277					-0.01244236225898021
KYSTTFFMVTF	11	Unmodified						0	0	0		ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	686.336307	1370.65806	1.1914	0.00081771	-2.8514	-0.001957	-1.66	-0.0011393	686.3349014868674	31.138	0.14478	31.133	31.084	31.229	-0.0050716	1089	67	0.96624947	0.04027295	0.96473	390.9098		16.293	0.021077	0.0004601	-0.00075972	NaN	28.296	238	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20040			12942	3412	7432	7594							-0.01244236225898021
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7691141436501	2	512.769114	1023.52368	1.6013	0.00082111	-0.23819	-0.00012214	1.3631	0.00069897	512.7691777899555	16.467	0.23974	16.454	16.406	16.645	-0.012995	1296	40	0.8394264	0.023987234	0.83790696	340.7493	0	9.737213						176	11	3	NaN	NaN	NaN	0.10206	1	9317	9317		35.523	8.4765	1	21617			12943	1091	7433	7595	10278	10278					0.01285446343717922
KYTEGVQSL	9	Unmodified						0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.769114	1023.52368	2.0312	0.0010415	0.76588	0.00039272	2.7971	0.0014343	513.2705479397124	16.446	0.1918	16.446	16.374	16.566	0	1296	46	0.8394264	0.027671635	0.8394264	340.7493		11.232788	-0.0039558	0.00066753	0.00075972	NaN	35.523	143	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16439			12944	1091	7433	7595							0.01285446343717922
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.81097895835	2	618.810979	1235.6074	1.6655	0.0010307	-1.8534	-0.0011469	-0.18783	-0.00011623	618.8104116953265	23.007	0.12026	23.007	22.983	23.103	0	1158	76	0.92408	0.04589075	0.92408	374.2573	0	18.585999						190	6	2	NaN	NaN	NaN	0.21251	1	17420	17420		34.454	20.412	1	41760			12945	4162	7434	7596	10279	10279					-0.0009744227925239102
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.81097895835	2	618.810979	1235.6074	1.1349	0.00070229	-4.614	-0.0028552	-3.479	-0.0021529	618.8073546942459	23.055	0.16857	23.041	22.969	23.138	-0.013294	1155	82	0.92591566	0.049572706	0.9243962	375.00073	0	20.07721						209	8	2	NaN	NaN	NaN	0.01148	1	16688	16688		69.363	39.765	1	47268			12946	4162	7434	7596	10280	10280					-0.0009744227925239102
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.81097895835	2	576.810979	1151.6074	1.858	0.0010717	-1.7773	-0.0010251	0.080752	4.6578E-05	576.8095630245073	16.302	0.16797	16.302	16.278	16.446	0	1218	64	0.8873258	0.038639963	0.8873258	359.6611	0	15.661957						229	8	3	NaN	NaN	NaN	0.25548	1	14869	14869		21.771	0	1	35791			12947	1601	7435	7597	10281	10281					0.037665577207462775
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.81097895835	2	576.810979	1151.6074	1.7894	0.0010321	-0.1035	-5.9698E-05	1.6859	0.00097245	576.8102957193062	16.419	0.21573	16.406	16.334	16.55	-0.012995	1218	61	0.8873258	0.036801934	0.8858064	359.6611	0	14.916992						276	10	3	NaN	NaN	NaN	0.026443	1	14364	14364		63.765	13.45	1	41455			12948	1601	7435	7597	10282	10282					0.037665577207462775
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.30840647965	2	588.308406	1174.60226	1.8172	0.001069	-1.2571	-0.00073958	0.56003	0.00032947	588.3073786751332	20.309	0.16829	20.309	20.261	20.429	0	1167	106	0.91857195	0.06427485	0.91857195	372.2399	0	26.04657						512	8	4	NaN	NaN	NaN	1.9447E-18	1	15639	15639		195.74	107.97	1	137580			12949	440	7436	7598	10283	10283					0.02194298648782933
KYTLDVEL	8	Unmodified	_KYTLDVEL_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5298891882	1	980.529889	979.522613	1.8316	0.001796	-1.5263	-0.0014966	0.30528	0.00029933	980.529499371034	36.421	0.096352	36.422	36.398	36.494	0.0016747	237	100	1.4784646	0.058654904	1.4769452	300.26047	0	11.912201						252	5	3	NaN	NaN	NaN	0.65542	1	7705	7705		21.835	2.7167	1	24428			12950	4275	7437	7599	10284	10284					0.032032319747941074
KYTLDVEL	8	Unmodified						0	0	0		ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	980.529889	979.522613	1.6635	0.0016311	-1.8684	-0.001832	-0.20494	-0.00020095	980.5292971689352	36.446	0.096504	36.446	36.398	36.495	0	240	103	1.4766881	0.060448408	1.4766881	299.8997		12.276428	0.01214	-0.00020732	-0.00012852	NaN	21.835	286	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25935			12951	4275	7437	7599							0.032032319747941074
KYTLGFVVI	9	Unmodified	_KYTLGFVVI_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3129605413001	2	520.312961	1038.61137	1.3934	0.00072503	-3.4097	-0.0017741	-2.0162	-0.0010491	520.3115027823212	29.136	0.072411	29.136	29.136	29.208	0	1263	43	0.85970795	0.025797546	0.85970795	348.91498	0	10.470001						113	4	3	NaN	NaN	NaN	0.070055	1	10164	10164		40.154	23.57	1	16574			12952	4603	7438	7600	10285	10285					0.09360692005134297
KYTLGFVVI	9	Unmodified	_KYTLGFVVI_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3129605413001	2	520.312961	1038.61137	1.1197	0.0005826	-5.0959	-0.0026514	-3.9761	-0.0020688	520.3102414687943	29.183	0.1207	29.175	29.127	29.248	-0.0077209	1260	43	0.8615505	0.025794804	0.8600311	349.66278	0	10.468872						133	6	3	NaN	NaN	NaN	0.16171	1	9955	9955		27.789	3.2268	1	15074			12953	4603	7438	7600	10286	10286					0.09360692005134297
KYTNLVTGW	9	Unmodified	_KYTNLVTGW_					0	0	0		OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant;ENSG00000144909|ENST00000296220|OSBPL11	OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2874740723001	2	541.287474	1080.5604	1.9817	0.0010727	-6.0669	-0.003284	-4.0852	-0.0022113	541.2833488334446	23.031	0.21675	23.031	22.959	23.176	0	1260	73	0.8615505	0.04420048	0.8615505	349.48517	0	17.92978						187	10	3	NaN	NaN	NaN	0.097143	1	12015	12015		36.235	21.381	1	17467			12954	3499	7439	7601	10287	10287					0.023337429602861448
KYTNLVTGW	9	Unmodified						0	0	0		OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant;ENSG00000144909|ENST00000296220|OSBPL11	OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.287474	1080.5604	1.5995	0.0008658	-4.4292	-0.0023975	-2.8296	-0.0015316	541.2850667557283	23.079	0.12046	23.065	23.041	23.162	-0.013294	1266	73	0.85786515	0.04419577	0.8563457	347.9902		17.927856	0.017132	0.00095055	-0.0026024	NaN	36.235	158	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14144			12955	3499	7439	7601							0.023337429602861448
KYTNWKAFL	9	Unmodified	_KYTNWKAFL_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8189413762001	2	585.818941	1169.62333	1.9604	0.0011484	-2.4572	-0.0014395	-0.49683	-0.00029105	585.8176040690103	22.187	0.16888	22.187	22.139	22.308	0	1185	58	0.90755045	0.034918368	0.90755045	367.79175	0	14.15094						203	8	3	NaN	NaN	NaN	0.13196	1	15483	15483		31.198	12.034	1	25632			12956	403	7440	7602	10288	10288					0.04530308748326206
KYTNWKAFL	9	Unmodified						0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.818941	1169.62333	1.2152	0.00071187	-1.6638	-0.00097467	-0.4486	-0.0002628	585.8183892014476	22.404	0.12023	22.39	22.318	22.438	-0.013733	1182	64	0.9093879	0.038606524	0.90786844	368.53635		15.645569	0.10135	0.00057761	0.00015899	NaN	31.198	129	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17805			12957	403	7440	7602							0.04530308748326206
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2956334554001	2	545.295633	1088.57671	2.0621	0.0011245	-2.8686	-0.0015642	-0.80647	-0.00043977	545.2940196682965	11.74	0.36019	11.74	11.644	12.004	0	1215	115	0.8891654	0.06996906	0.8891654	360.65356	0	28.380066						993	16	4	NaN	NaN	NaN	0.0094682	1	12332	12332		93.472	43.639	1	195540			12958	4632	7441	7603	10289	10289					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	363.86618112580004	3	363.866181	1088.57671	2.4735	0.00090001	-1.5344	-0.00055831	0.93908	0.0003417	363.8658845908546	11.716	0.4561	11.716	11.62	12.076	0	1479	145	0.72651637	0.08919966	0.72651637	442.01736	0	54.269623						1393	20	5	NaN	NaN	NaN	0.04947	1	12333	12333		40.957	11.41	1	699780			12959	4632	7441	7603	10290	10290					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2956334554001	2	545.295633	1088.57671	1.6142	0.00088021	-1.7681	-0.00096415	-0.15393	-8.394E-05	545.2947485871824	11.958	0.60001	11.95	11.734	12.334	-0.0081854	1215	115	0.8891654	0.06996906	0.88764596	360.65356	0	28.380066						1344	26	3	NaN	NaN	NaN	0.0052656	1	12028	12028		102.05	52.085	1	221560			12960	4632	7441	7603	10291	10291					0.03596868917043139
KYTSWFYE	8	Unmodified	_KYTSWFYE_					0	0	0			REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	REV__tr|U7SVH9|U7SVH9_FUSNUKnr4/Smi1-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01234PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.1746803434333	3	375.17468	1122.50221	2.9622	0.0011113	6.6012	0.0024766	9.5634	0.0035879	375.177022674379	25.346	0.072369	25.334	25.31	25.382	-0.012011	1527	28	0.69677675	0.016743958	0.6952573	423.76364	0	10.183289						37	4	2	NaN	NaN	NaN	0.84727	1	13369	13369		0.69115	0.24532	1	2409.4	+		12961	13536	7442	7604	10292	10292					-0.05413938685001085
KYTSWYVAL	9	Unmodified	_KYTSWYVAL_					0	0	0		ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038|FGF2	ENSG00000138685|ENST00000644866|FGF2	ENSG00000138685|ENST00000644866|FGF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.79767461785	2	565.797675	1129.5808	2.3366	0.0013221	-3.8831	-0.0021971	-1.5465	-0.000875	565.7959973213837	25.926	0.048271	25.926	25.901	25.95	0	1257	91	0.86339295	0.055220783	0.86339295	350.0411	0	22.387909						204	3	4	NaN	NaN	NaN	0.19268	1	14068	14068		25.801	13.231	1	42760			12962	3180	7443	7605	10293	10293					0.02118913620074636
KYTSWYVAL	9	Unmodified	_KYTSWYVAL_					0	0	0		ENSG00000138685|ENST00000644866|FGF2;nc|ENSG00000138685|P09038-3|FGF2;nc|ENSG00000138685|P09038-1|FGF2;nc|ENSG00000138685|P09038|FGF2	ENSG00000138685|ENST00000644866|FGF2	ENSG00000138685|ENST00000644866|FGF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.79767461785	2	565.797675	1129.5808	2.0922	0.0011837	0.017329	9.8048E-06	2.1095	0.0011936	566.3007091671684	25.949	0.12067	25.938	25.914	26.034	-0.0116	1257	127	0.86339295	0.07726741	0.8618735	350.04108	0	31.326141						360	6	4	NaN	NaN	NaN	0.03618	1	13622	13622		52.78	22.17	1	63377			12963	3180	7443	7605	10294	10294					0.02118913620074636
KYTTLREH	8	Unmodified	_KYTTLREH_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2827230454001	2	524.282723	1046.55089	1.4462	0.00075823	-0.46132	-0.00024186	0.98491	0.00051637	524.2824108319601	13.252	0.19218	13.252	13.228	13.421	0	1293	55	0.84127116	0.033207774	0.84127116	341.39844	0	13.476135						193	9	3	NaN	NaN	NaN	0.43738	1	10495	10495		34.439	0	1	30490	+		12964	10837	7444	7606	10295	10295					0.02947974674748366
KYVADFSQF	9	Unmodified	_KYVADFSQF_					0	0	0		KCNJ15|p.Q332H|1|0.23|ENSG00000157551|chr21:38300257-38300257|G/C|missense_variant;ENSG00000157551|ENST00000398938|KCNJ15	KCNJ15|p.Q332H|1|0.23|ENSG00000157551|chr21:38300257-38300257|G/C|missense_variant	KCNJ15|p.Q332H|1|0.23|ENSG00000157551|chr21:38300257-38300257|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7716568326	2	552.771657	1103.52876	1.2629	0.00069811	2.5518	0.0014106	3.8147	0.0021087	552.7728393694632	22.621	0.12062	22.607	22.583	22.704	-0.01354	1257	55	0.86339295	0.033168256	0.8618735	350.1407	0	13.45108						123	6	2	NaN	NaN	NaN	0.097143	1	12640	12640		36.235	10.12	1	29759			12965	3960	7445	7607	10296	10296					-0.018862497936879663
KYVAEFLEW	9	Unmodified	_KYVAEFLEW_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.802956961	2	592.802957	1183.59136	1.6011	0.00094915	-2.1617	-0.0012814	-0.56054	-0.00033229	592.8019134854947	28.339	0.19302	28.339	28.243	28.436	0	1197	76	0.9001988	0.04594034	0.9001988	364.76224	0	18.615112						423	9	6	NaN	NaN	NaN	0.02857	1	15963	15963		60.982	23.679	1	62668			12966	5804	7446	7608	10297	10297					0.00690896274500119
KYVAEFLEW	9	Unmodified	_KYVAEFLEW_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.802956961	2	592.802957	1183.59136	0.80353	0.00047634	-2.0713	-0.0012279	-1.2678	-0.00075154	592.8012856409506	28.363	0.21715	28.354	28.233	28.45	-0.0089779	1197	76	0.9001988	0.045935333	0.8986794	364.76224	0	18.613098						346	10	4	NaN	NaN	NaN	0.38313	1	15353	15353		14.425	4.0649	1	60404			12967	5804	7446	7608	10298	10298					0.00690896274500119
KYVDKLEKI	9	Unmodified	_KYVDKLEKI_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.2288965609	3	379.228897	1134.66486	1.6546	0.00062748	-1.4787	-0.00056078	0.17588	6.6699E-05	379.22882258730965	15.318	0.072092	15.318	15.294	15.366	0	1482	28	0.72465914	0.016716719	0.72465914	440.6639	0	10.165405						47	4	2	NaN	NaN	NaN	0.36163	1	14279	14279		15.311	4.3459	1	3419.7			12968	1825	7447	7609	10299	10299					0.10291444716995102
KYVEQLLTLF	10	Unmodified	_KYVEQLLTLF_					0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3606390154	2	627.360639	1252.70673	0.83018	0.00052082	-3.5804	-0.0022462	-2.7502	-0.0017254	627.3586023239767	31.549	0.1207	31.549	31.525	31.646	0	1119	40	0.9479278	0.023832321	0.9479278	383.85785	0	9.650757						100	6	2	NaN	NaN	NaN	0.63397	1	17848	17848		12.57	1.6046	1	13547			12969	237	7448	7610	10300	10300					0.09048000405505263
KYVEQLLTLF	10	Unmodified						0	0	0		CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5;CUL5-ATM|1|fusion	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	CUL5|p.N565Ifs*18|1|0.27|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.360639	1252.70673	0.55669	0.00034924	-1.8724	-0.0011746	-1.3157	-0.0008254	627.3585129619692	31.669	0.096533	31.664	31.664	31.761	-0.0044155	1116	34	0.94976085	0.02016145	0.9482414	384.60013		8.164246	0.057607	0.0013712	0.00015681	NaN	12.57	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6591.1			12970	237	7448	7610							0.09048000405505263
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8429477887502	2	610.842948	1219.67134	1.177	0.00071895	-2.4731	-0.0015107	-1.2961	-0.00079172	610.8414188889199	15.822	0.14397	15.822	15.75	15.894	0	1149	37	0.92958635	0.022021592	0.92958635	376.54172	0	8.9201355						142	7	3	NaN	NaN	NaN	0.077759	1	16979	16979		39.039	10.144	1	11362			12971	1440	7449	7611	10301	10301					0.07029382668383732
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.5643906813667	3	407.564391	1219.67134	1.5097	0.00061531	-0.7989	-0.0003256	0.71082	0.00028971	407.56423349005183	15.798	0.28781	15.798	15.726	16.014	0	1431	46	0.75620437	0.027809858	0.75620437	459.46222	0	16.897003						357	13	4	NaN	NaN	NaN	0.34922	1	16981	16981		10.861	1.9198	1	60558			12972	1440	7449	7611	10302	10302					0.07029382668383732
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.80275999575	2	495.80276	989.590967	1.6947	0.00084023	-3.236	-0.0016044	-1.5413	-0.00076416	495.80101564901406	22.453	0.048082	22.453	22.429	22.477	0	1311	43	0.83019954	0.025839448	0.83019954	337.15714	0	10.493805						82	3	3	NaN	NaN	NaN	0.29681	1	8217	8217		19.118	11.528	1	12034			12973	2167	7450	7612	10303	10303					0.09575521345323068
KYVGQLAVL	9	Unmodified	_KYVGQLAVL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.80275999575	2	495.80276	989.590967	0.99241	0.00049204	-1.9334	-0.00095857	-0.94096	-0.00046653	495.8017144305451	22.476	0.096445	22.462	22.438	22.535	-0.013733	1305	37	0.83389086	0.022148132	0.8323714	338.65622	0	8.99472						89	5	3	NaN	NaN	NaN	0.20577	1	8046	8046		24.961	4.5124	1	9848.5			12974	2167	7450	7612	10304	10304					0.09575521345323068
KYVHLFPKL	9	Unmodified	_KYVHLFPKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.23409338913336	3	382.234093	1143.68045	1.6365	0.00062551	-2.8941	-0.0011062	-1.2576	-0.00048071	382.23274518718637	20.021	0.31247	20.021	19.9	20.213	0	1404	40	0.77288127	0.024075806	0.77288127	469.9433	0	14.639038						183	14	2	NaN	NaN	NaN	0.074859	1	14598	14598		34.454	21.353	1	35167			12975	3460	7451	7613	10305	10305					0.11435776024700317
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.8262350920501	2	510.826235	1019.63792	2.0448	0.0010445	-1.7085	-0.00087277	0.33625	0.00017176	510.825262929798	19.804	0.072084	19.804	19.78	19.852	0	1257	37	0.86339295	0.022107422	0.86339295	350.4958	0	8.974518						75	4	2	NaN	NaN	NaN	0.38313	1	9369	9369		14.425	3.2547	1	8821			12976	2198	7452	7614	10306	10306					0.1288838089649289
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.3187742007	2	587.318774	1172.623	1.0714	0.00062923	-1.7988	-0.0010565	-0.72744	-0.00042724	587.3179823324666	22.187	0.26521	22.173	22.077	22.342	-0.013731	1161	58	0.9222442	0.034880698	0.92072475	373.73535	0	14.135284						300	12	3	NaN	NaN	NaN	0.052553	1	15023	15023		45.827	10.53	1	41808			12977	330	7453	7615	10307	10307					0.043588890284581794
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2	ENST00000527832.5_1_11:724661-726978:+|nuORF	ENST00000527832.5_1_11:724661-726978:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.83679977835	2	594.8368	1187.65905	1.5545	0.00092467	-2.2052	-0.0013117	-0.65066	-0.00038704	594.8351522165422	22.814	0.16881	22.814	22.766	22.935	0	1107	43	0.9552588	0.025653124	0.9552588	387.05737	0	10.394287						195	8	4	NaN	NaN	NaN	0.12381	1	16088	16088		42.995	36.745	1	28194			12978	5062	7454	7616	10308	10308					0.07272346205309077
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.19770788283336	3	378.197708	1131.57129	2.0147	0.00076197	-2.3201	-0.00087747	-0.30539	-0.0001155	378.19687586105846	18.892	0.023996	18.892	18.868	18.892	0	1464	46	0.73579943	0.027840078	0.73579943	447.45294	0	16.930054						49	2	2	NaN	NaN	NaN	0.67082	1	14152	14152		0.81135	0.25438	1	3747.8			12979	2438	7455	7617	10309	10309					0.01077145334556917
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7929235909501	2	566.792924	1131.57129	2.2092	0.0012521	-2.1397	-0.0012128	0.069447	3.9362E-05	566.7912635766083	18.892	0.19195	18.892	18.844	19.036	0	1224	37	0.883646	0.022078753	0.883646	358.2446	0	8.95108						243	9	4	NaN	NaN	NaN	0.13999	1	14153	14153		30.035	12.066	1	37664			12980	2438	7455	7617	10310	10310					0.01077145334556917
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7929235909501	2	566.792924	1131.57129	1.4293	0.00081013	-2.4379	-0.0013818	-1.0086	-0.00057167	566.7910121324181	19.034	0.19222	19.02	18.948	19.14	-0.014059	1224	49	0.883646	0.029438376	0.88212657	358.2446	0	11.934784						185	9	2	NaN	NaN	NaN	0.030545	1	13703	13703		58.398	28.799	1	39408			12981	2438	7455	7617	10311	10311					0.01077145334556917
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7873068968001	2	512.787307	1023.56006	1.2884	0.00066069	-5.5421	-0.0028419	-4.2536	-0.0021812	512.7835388417595	19.298	0.14419	19.284	19.212	19.356	-0.014141	1278	67	0.85049206	0.04055661	0.8489726	345.24106	0	16.463165						205	7	3	NaN	NaN	NaN	0.38313	1	9336	9336		14.425	3.8201	1	24358			12982	1664	7456	7618	10312	10312					0.049223232404415285
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		USP8-MYEF2|1|fusion;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;ENSG00000138592|ENST00000307179|USP8	USP8-MYEF2|1|fusion;ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.82114971415	2	556.82115	1111.62775	2.0731	0.0011544	-1.1494	-0.00063999	0.92376	0.00051437	556.8206727248012	26.118	0.31369	26.107	26.059	26.373	-0.011137	1197	76	0.9001988	0.045980036	0.8986794	365.03418	0	18.64508						402	14	4	NaN	NaN	NaN	0.024221	1	12976	12976		66.656	29.354	1	105870			12983	14017;3163	7457	7619	10313	10313					0.07639773171217712
KYWDTFYKI	9	Unmodified	_KYWDTFYKI_					0	0	0		ENST00000460539.5_1_2:172188347-172248586:-|nuORF;nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8	ENST00000460539.5_1_2:172188347-172248586:-|nuORF	ENST00000460539.5_1_2:172188347-172248586:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.32405654385	2	632.324057	1262.63356	1.6582	0.0010485	-2.7834	-0.00176	-1.1252	-0.00071148	632.3221375439547	23.875	0.16876	23.875	23.827	23.995	0	1131	67	0.94059354	0.040329456	0.94059354	380.85526	0	16.329773						244	8	4	NaN	NaN	NaN	0.46965	1	18056	18056		15.822	5.4618	1	28440			12984	2384	7458	7620	10314	10314					0.012748716828809847
KYWDVPPPGF	10	Unmodified	_KYWDVPPPGF_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3031241365	2	603.303124	1204.5917	1.7226	0.0010393	-1.6285	-0.00098248	0.094115	5.678E-05	603.803811069366	25.25	0.21717	25.25	25.105	25.322	0	1176	106	0.9130621	0.06429565	0.9130621	369.90015	0	26.047485						534	10	3	NaN	NaN	NaN	0.28195	1	16608	16608		28.495	9.1589	1	111720			12985	659	7459	7621	10315	10315					-0.002416840056412184
KYWDVPPPGF	10	Unmodified	_KYWDVPPPGF_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3031241365	2	603.303124	1204.5917	2.1673	0.0013076	-1.5595	-0.00094083	0.60788	0.00036674	603.3022669133305	25.491	0.43426	25.491	25.298	25.732	0	1179	103	0.9112251	0.062455237	0.9112251	369.15594	0	25.30191						1032	19	3	NaN	NaN	NaN	0.068403	1	16609	16609		50.315	20.28	1	438940			12986	659	7459	7621	10316	10316					-0.002416840056412184
KYWPLFVLF	9	Unmodified	_KYWPLFVLF_					0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.8444278452	2	606.844428	1211.6743	0.63458	0.00038509	0.21044	0.00012771	0.84502	0.00051279	606.8446700799094	37.022	0.16838	37.024	36.952	37.121	0.0022507	1176	52	0.9130621	0.031222522	0.91154265	369.87564	0	12.648041						257	8	3	NaN	NaN	NaN	0.27507	1	16101	16101		23.334	11.286	1	26028			12987	1483	7460	7622	10317	10317					0.0769325779317569
KYWPLFVLF	9	Unmodified						0	0	0		LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant;ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	LEPROTL1|p.Y42Tfs*10|1|0.13|ENSG00000104660|chr8:30104325-30104325|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.844428	1211.6743	1.0404	0.00063139	-1.4413	-0.00087465	-0.40087	-0.00024326	606.8439946253137	36.856	0.19246	36.856	36.808	37	0	1179	61	0.9112251	0.036738336	0.9112251	369.1315		14.882477	-0.084141	-0.0010302	-0.00015879	NaN	23.334	271	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30455			12988	1483	7460	7622							0.0769325779317569
KYWRLYQF	8	Unmodified	_KYWRLYQF_					0	0	0		GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant;GABRG1|p.D265Efs*32|1|0.11|ENSG00000163285|chr4:46058338-46058339|-/T|frameshift_variant;ENSG00000163285|ENST00000295452|GABRG1	GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant	GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3191085517	2	602.319109	1202.62366	0.6807	0.00041	-7.9139	-0.0047667	-7.2332	-0.0043567	602.814752226473	30.004	0.12068	29.997	29.949	30.07	-0.0064106	1131	82	0.94059354	0.04954064	0.93907416	381.0608	0	20.070312						169	6	3	NaN	NaN	NaN	0.82797	1	15907	15907		5.4659	1.0528	1	14913			12989	4216	7461	7623	10318	10318					0.030457284681460806
KYYDKKYQVF	10	Unmodified	_KYYDKKYQVF_					0	0	0		ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF;nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY	ENST00000493891.5_1_1:60133021-60228256:+|nuORF	ENST00000493891.5_1_1:60133021-60228256:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.24320570996656	3	461.243206	1380.70779	1.3385	0.00061739	-0.31855	-0.00014693	1.02	0.00047046	461.2432688091061	16.443	0.14389	16.43	16.286	16.43	-0.012995	1398	37	0.77658504	0.022220135	0.7750656	471.22992	0	13.483154						161	7	3	NaN	NaN	NaN	0.58697	1	18965	18965		15.786	0.82651	1	19639			12990	4839	7462	7624	10319	10319					0.032662147743849346
KYYEDNKQFF	10	Unmodified	_KYYEDNKQFF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3247848253499	2	691.324785	1380.63502	2.1832	0.0015093	-1.8147	-0.0012546	0.36852	0.00025477	691.8249286835847	18.173	0.095991	18.173	18.149	18.245	0	1086	40	0.9680805	0.023798943	0.9680805	391.6223	0	9.627502						107	5	3	NaN	NaN	NaN	0.0072903	1	19893	19893		74.737	45.841	1	11287			12991	5371	7463	7625	10320	10320					-0.04007539019039541
KYYEDNKQFF	10	Unmodified	_KYYEDNKQFF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.21894870576654	3	461.218949	1380.63502	1.5391	0.00070987	0.054108	2.4956E-05	1.5932	0.00073483	461.2190492018333	18.197	0.095991	18.197	18.149	18.245	0	1509	61	0.70793515	0.037162423	0.70793515	429.57355	0	22.55008						116	5	2	NaN	NaN	NaN	0.57785	1	19894	19894		10.213	6.9085	1	9645.1			12992	5371	7463	7625	10321	10321					-0.04007539019039541
KYYEDNKQFF	10	Unmodified	_KYYEDNKQFF_					0	0	0		ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	ENSG00000184752|ENST00000327772|NDUFA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3247848253499	2	691.324785	1380.63502	1.9786	0.0013679	-0.47728	-0.00032995	1.5013	0.0010379	691.3249309114253	18.266	0.14393	18.252	18.204	18.348	-0.01395	1083	40	0.9699114	0.023798943	0.96839195	392.36298	0	9.627502						178	7	4	NaN	NaN	NaN	0.15566	1	18962	18962		39.34	28.17	1	14521			12993	5371	7463	7625	10322	10322					-0.04007539019039541
KYYEYEFMEL	10	Unmodified	_KYYEYEFMEL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.8154040217499	2	707.815404	1413.61626	1.0663	0.00075471	0.63756	0.00045128	1.7038	0.001206	707.8158193619793	27.398	0.21727	27.398	27.35	27.567	0	1053	76	0.9882094	0.04570812	0.9882094	399.67267	0	18.486237						383	10	4	NaN	NaN	NaN	0.21251	1	20170	20170		34.454	11.336	1	37249			12994	596	7464	7626	10323	10323					-0.07400836705096481
KYYEYEFMEL	10	Unmodified	_KYYEYEFMEL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.8154040217499	2	707.815404	1413.61626	0.81968	0.00058018	0.18992	0.00013443	1.0096	0.00071461	707.8153225004324	27.446	0.21721	27.436	27.387	27.604	-0.010126	1050	70	0.9900381	0.042060494	0.9885187	400.41226	0	17.010986						367	10	4	NaN	NaN	NaN	0.20007	1	19213	19213		35.523	16.359	1	40896			12995	596	7464	7626	10324	10324					-0.07400836705096481
KYYEYEFMEL	10	Oxidation (M)	_KYYEYEFM(Oxidation (M))EL_		KYYEYEFM(1)EL		KYYEYEFM(100)EL	0	0	1		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.8128613327999	2	715.812861	1429.61117	1.3045	0.0009338	-1.3171	-0.00094282	-0.012598	-9.0181E-06	715.8120132359167	24.019	0.21718	24.019	23.995	24.213	0	1038	70	0.997351	0.042051375	0.997351	403.32617	0	17.005493						405	10	5	NaN	NaN	NaN	0.00016917	1	20273	20273		104.89	60.257	1	71094			12996	596	7464	7627	10325	10325		60			-0.08645140567705312
KYYFIFSI	8	Unmodified	_KYYFIFSI_					0	0	0			REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.79186095845	2	540.791861	1079.56917	1.9669	0.0010637	-0.92177	-0.00049849	1.0452	0.00056521	541.2916204851426	22.911	0.072298	22.911	22.911	22.983	0	1218	52	0.8873258	0.03127992	0.8873258	359.94495	0	12.688751						75	4	2	NaN	NaN	NaN	0.82797	1	11968	11968		5.4659	0	1	6326.6	+		12997	13587	7465	7628	10326	10326					0.03256716596752085
KYYFIFSI	8	Unmodified						0	0	0			REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.791861	1079.56917	1.9669	0.0010637	-0.92177	-0.00049849	1.0452	0.00056521	541.2916204851426	22.911	0.072298	22.911	22.911	22.983	0	1218	52	0.8873258	0.03127992	0.8873258	359.94495		12.688751	-0.016967	-0.00048385	-0.0010798	NaN	5.4659	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6326.6	+		12998	13587	7465	7628							0.03256716596752085
KYYFIFSI	8	Unmodified						0	0	0			REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	REV__tr|U7T336|U7T336_FUSNUGPHfamilyglycoside/pentoside/hexuronide:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00373PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.791861	1079.56917	1.5759	0.00085225	-0.10332	-5.5874E-05	1.4726	0.00079638	540.7916480708162	22.958	0.072338	22.945	22.921	22.993	-0.01354	1212	64	0.8910048	0.038644075	0.88948536	361.43732		15.676025	0.016967	0.00040138	0.0010798	NaN	5.4659	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9295.9	+		12999	13587	7465	7628							0.03256716596752085
KYYIPGAL	8	Unmodified	_KYYIPGAL_					0	0	0		ENSG00000156966|ENST00000287590|B3GNT7	ENSG00000156966|ENST00000287590|B3GNT7	ENSG00000156966|ENST00000287590|B3GNT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5189305714001	1	924.518931	923.511654	1.8333	0.0016949	-1.0604	-0.00098032	0.77294	0.0007146	924.5173584954136	34.517	0.096542	34.517	34.469	34.565	0	1272	79	0.854179	0.047899425	0.854179	173.62059	0	9.736038						182	5	3	NaN	NaN	NaN	0.84876	1	6478	6478		0.39566	0	1	17056			13000	3936	7466	7629	10327	10327					0.046838743911848724
KYYQTPRLWLF	11	Unmodified	_KYYQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.60999995883327	3	505.61	1513.80817	1.5294	0.00077328	-1.1445	-0.00057868	0.38488	0.0001946	505.60933038294513	27.591	0.072382	27.591	27.567	27.639	0	1401	166	0.77473325	0.101704836	0.77473325	469.6968	0	61.660492						233	4	2	NaN	NaN	NaN	0.72321	1	20629	20629		5.9336	3.4724	1	20620			13001	3496	7467	7630	10328	10328					0.07181871828061048
KYYQTPRLWLF	11	Unmodified	_KYYQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.91136170495	2	757.911362	1513.80817	1.4609	0.0011072	-0.6505	-0.00049302	0.81038	0.00061419	757.9117670849091	27.591	0.14478	27.591	27.543	27.688	0	981	52	1.0320443	0.031018019	1.0320443	417.13354	0	12.536896						134	7	2	NaN	NaN	NaN	5.899E-05	1	20630	20630		109.78	78.586	1	12715			13002	3496	7467	7630	10329	10329					0.07181871828061048
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3453233022001	2	616.345323	1230.67609	0.96651	0.0005957	-1.5941	-0.00098254	-0.62763	-0.00038684	616.3440134103579	20.838	0.1686	20.838	20.79	20.959	0	1128	43	0.9424274	0.025672436	0.9424274	381.705	0	10.397949						285	8	4	NaN	NaN	NaN	0.1507	1	17282	17282		28.495	1.1991	1	61669			13003	2151	7468	7631	10330	10330					0.0699826681113791
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2326410236667	3	411.232641	1230.67609	1.232	0.00050662	-1.4999	-0.00061679	-0.2679	-0.00011017	411.23210064428787	20.838	0.16861	20.838	20.814	20.983	0	1479	40	0.72651637	0.024143755	0.72651637	441.37997	0	14.66806						236	8	4	NaN	NaN	NaN	0.055351	1	17283	17283		32.778	15.196	1	40557			13004	2151	7468	7631	10331	10331					0.0699826681113791
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3453233022001	2	616.345323	1230.67609	0.71454	0.0004404	-0.63745	-0.00039289	0.077091	4.7514E-05	616.3449481777908	21.055	0.31297	21.041	20.945	21.258	-0.014086	1128	64	0.9424274	0.038523257	0.94090796	381.70496	0	15.602814						394	14	3	NaN	NaN	NaN	0.29341	1	16564	16564		19.336	4.3235	1	71149			13005	2151	7468	7631	10332	10332					0.0699826681113791
KYYVEGIM	8	Unmodified	_KYYVEGIM_					0	0	0			REV__ENST00000584176.1_1_17:72843434-72846906:-|nuORF	REV__ENST00000584176.1_1_17:72843434-72846906:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.4964805698	1	1002.49648	1001.4892	2.1264	0.0021317	-4.05	-0.0040601	-1.9237	-0.0019285	1002.4922803821955	26.505	0.072388	26.505	26.481	26.553	0	207	223	1.496219	0.13153672	1.496219	303.77374	0	26.705566						451	4	3	NaN	NaN	NaN	0.6053	1	8646	8646		24.961	1.1106	1	77515	+		13006	10215	7469	7632	10333	10333					-0.011480930687412183
LAAAAAYI	8	Unmodified	_LAAAAAYI_					0	0	0		BTBD10|p.D434Y|1|0.36|ENSG00000148925|chr11:13388959-13388959|C/A|missense_variant	BTBD10|p.D434Y|1|0.36|ENSG00000148925|chr11:13388959-13388959|C/A|missense_variant	BTBD10|p.D434Y|1|0.36|ENSG00000148925|chr11:13388959-13388959|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.4348665909998	1	763.434867	762.42759	1.3335	0.001018	-3.4576	-0.0026397	-2.1242	-0.0016217	763.4320957490239	28.821	0.19307	28.813	28.716	28.909	-0.0083504	603	58	1.2603331	0.03419459	1.2588136	256.96915	0	6.971924						189	9	2	NaN	NaN	NaN	0.84876	1	4174	4174		0.39566	0	1	37042			13007	69	7470	7633	10334	10334					0.036873432942570616
LAAAGETK	8	Unmodified	_LAAAGETK_					0	0	0			REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	REV__nc|ENSG00000156374|Q9BYE7-3|PCGF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4199448083	1	760.419945	759.412668	1.2185	0.00092656	5.1416	0.0039098	6.3601	0.0048363	760.4240898526785	32.225	0.14478	32.225	32.152	32.297	0	522	52	1.3088527	0.030507088	1.3088527	266.8805	0	6.22052						112	7	2	NaN	NaN	NaN	0.83211	1	4210	4210		4.9097	0	1	11529	+		13008	10126	7471	7634	10335	10335					0.023338514262832177
LAAAGHLI	8	Unmodified	_LAAAGHLI_					0	0	0			REV__ENSG00000150054|ENST00000683449|MPP7	REV__ENSG00000150054|ENST00000683449|MPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.4617500435	1	765.46175	764.454474	1.3229	0.0010126	-8.4903	-0.006499	-7.1673	-0.0054863	765.4548747007774	34.806	0.16887	34.806	34.758	34.927	0	471	73	1.3393306	0.043006897	1.3393306	273.06317	0	8.7682495						183	8	3	NaN	NaN	NaN	0.83849	1	4282	4282		4.0537	0	1	18500	+		13009	10006	7472	7635	10336	10336					0.06282451905462949
LAAATGNH	8	Unmodified	_LAAATGNH_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.384228004	1	754.384228	753.376952	1.7346	0.0013085	-10.845	-0.008181	-9.11	-0.0068725	754.3759726874157	19.228	0.35995	19.228	19.108	19.468	0	633	58	1.2423272	0.034231067	1.2423272	253.35176	0	6.9808655						393	16	3	NaN	NaN	NaN	0.84512	1	4120	4120		2.4615	0	1	56939			13010	1858	7473	7636	10337	10337					-0.009601860307270726
LAAEEPHAL	9	Unmodified	_LAAEEPHAL_					0	0	0		nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-5|SFI1	nc|ENSG00000198089|A8K8P3-5|SFI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.75072442525	2	475.750724	949.486896	1.603	0.00076262	-2.9922	-0.0014235	-1.3892	-0.00066092	475.7496093102637	17.021	0.096039	17.021	16.997	17.093	0	1254	46	0.8652351	0.027632773	0.8652351	351.58902	0	11.228607						101	5	2	NaN	NaN	NaN	0.23112	1	7073	7073		23.334	5.5355	1	13377			13011	5755	7474	7637	10338	10338					0.010131945178045498
LAAEEPHAL	9	Unmodified	_LAAEEPHAL_					0	0	0		nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-5|SFI1	nc|ENSG00000198089|A8K8P3-5|SFI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.75072442525	2	475.750724	949.486896	1.2626	0.00060071	0.081719	3.8878E-05	1.3444	0.00063958	475.75106459472926	17.018	0.12002	17.005	16.981	17.101	-0.013294	1254	43	0.8652351	0.025791943	0.86371565	351.58902	0	10.480591						123	6	3	NaN	NaN	NaN	0.27442	1	6945	6945		20.555	1.4371	1	13224			13012	5755	7474	7637	10339	10339					0.010131945178045498
LAAQDGPQGQQ	11	Unmodified	_LAAQDGPQGQQ_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.77017677615	2	556.770177	1111.5258	1.6609	0.00092475	3.23	0.0017984	4.8909	0.0027231	556.7714844710908	17.189	0.072014	17.189	17.165	17.237	0	1395	37	0.7784366	0.022220135	0.7784366	315.65945	0	9.010376						57	4	2	NaN	NaN	NaN	0.77883	1	13336	13336		0.44583	0.050164	1	4584.6	+		13013	9915	7475	7638	10340	10340					-0.025501249184799235
LAAQDGPQGQQ	11	Unmodified						0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.770177	1111.5258	1.6609	0.00092475	3.23	0.0017984	4.8909	0.0027231	556.7714844710908	17.189	0.072014	17.189	17.165	17.237	0	1395	37	0.7784366	0.022220135	0.7784366	315.65945		9.010376	-0.051435	0.0015278	0.0016855	NaN	0.44583	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4584.6	+		13014	9915	7475	7638							-0.025501249184799235
LAAQDGPQGQQ	11	Unmodified						0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.770177	1111.5258	2.0845	0.0011606	1.318	0.00073382	3.4025	0.0018944	556.7712323993879	17.306	0.07196	17.292	17.22	17.292	-0.013569	1398	37	0.77658504	0.022222579	0.7750656	314.90863		9.011353	0.051435	-0.00060127	-0.0016855	NaN	0.44583	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4911.6	+		13015	9915	7475	7638							-0.025501249184799235
LAAREHVL	8	Unmodified	_LAAREHVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.76925152940004	2	454.769252	907.52395	1.5938	0.0007248	-2.1127	-0.00096081	-0.51898	-0.00023602	454.76799163297295	13.829	0.14407	13.829	13.805	13.949	0	1302	31	0.8357362	0.018452704	0.8357362	339.8261	0	7.5032654						93	7	3	NaN	NaN	NaN	0.50906	1	6198	6198		30.61	7.2757	1	8380.2			13016	7185	7476	7639	10341	10341					0.06648910854232781
LAAREHVL	8	Unmodified	_LAAREHVL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.76925152940004	2	454.769252	907.52395	1.4668	0.00066705	-1.9784	-0.00089972	-0.51162	-0.00023267	454.7685542810454	14.045	0.14392	14.034	13.962	14.106	-0.010672	1299	25	0.8375814	0.014760554	0.83606195	340.5764	0	6.001953						75	7	2	NaN	NaN	NaN	0.69825	1	6080	6080		19.164	5.4265	1	5659.4			13017	7185	7476	7639	10342	10342					0.06648910854232781
LAATVACC	8	Unmodified	_LAATVACC_					0	0	0		ENST00000561775.5_1_15:66795189-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3477078425999	1	751.347708	750.340431	0.80061	0.00060153	-6.6371	-0.0049867	-5.8365	-0.0043852	751.3427490708411	35.458	0.096493	35.458	35.434	35.53	0	675	55	1.2170867	0.03246939	1.2170867	248.22232	0	6.6220703						88	5	2	NaN	NaN	NaN	0.8439	1	4056	4056		3.1533	0	1	9006.3			13018	7599	7477	7640	10343	10343					-0.04472522243304411
LAATVACC	8	Unmodified	_LAATVACC_					0	0	0		ENST00000561775.5_1_15:66795189-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF	ENST00000561775.5_1_15:66795189-66797161:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3477078425999	1	751.347708	750.340431	0.90456	0.00067964	-6.7817	-0.0050954	-5.8771	-0.0044157	751.342430857268	35.456	0.21718	35.457	35.433	35.65	0.00053024	669	55	1.2206948	0.03247285	1.2191753	248.95819	0	6.622772						153	10	2	NaN	NaN	NaN	0.8439	1	3981	3981		3.1533	0	1	14345			13019	7599	7477	7640	10344	10344					-0.04472522243304411
LAAVRGGG	8	Unmodified	_LAAVRGGG_					0	0	0		ENSG00000198324|ENST00000683047|PHETA1;nc|ENSG00000198324|Q8N4B1-4|PHETA1	REV__ENST00000518198.1_1_8:142138775-142151424:+|nuORF	REV__ENST00000518198.1_1_8:142138775-142151424:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.7086626453001	2	350.708663	699.402772	2.8562	0.0010017	-2.0601	-0.0007225	0.79604	0.00027918	350.70820287663554	18.194	0.095987	18.18	18.132	18.228	-0.01395	1491	34	0.7190863	0.020438194	0.71756685	293.68732	0	8.347321						63	5	2	NaN	NaN	NaN	0.84692	1	3149	3149		1.4396	0	1	4243.6			13020	12585	7478	7641	10345	10345					0.041047082115824196
LADAINTEF	9	Unmodified	_LADAINTEF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.488752655	1	993.488753	992.481476	1.9515	0.0019388	-0.24197	-0.00024039	1.7096	0.0016984	993.4890351906045	24.816	0.096523	24.816	24.791	24.888	0	219	118	1.4891195	0.06929743	1.4891195	302.36957	0	14.071014						279	5	3	NaN	NaN	NaN	0.011693	1	8309	8309		87.778	32.285	1	37928			13021	477	7479	7642	10346	10346					-0.015065290646703033
LADEKALVL	9	Unmodified	_LADEKALVL_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B;BCL11B|p.G596D|1|0.13|ENSG00000127152|chr14:99175049-99175049|C/T|missense_variant	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.2922250991999	2	486.292225	970.569897	1.4876	0.00072342	-1.4124	-0.00068683	0.075235	3.6586E-05	486.2912983548884	21.994	0.096277	21.98	21.956	22.053	-0.013897	1323	46	0.8228144	0.027695596	0.82129496	334.24768	0	11.250641						85	5	2	NaN	NaN	NaN	0.19455	1	7491	7491		25.681	6.3449	1	9098.6			13022	2527	7480	7643	10347	10347					0.08343511245789159
LADEKALVL	9	Unmodified						0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B;BCL11B|p.G596D|1|0.13|ENSG00000127152|chr14:99175049-99175049|C/T|missense_variant	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.292225	970.569897	1.8879	0.00091808	-2.2541	-0.0010961	-0.36615	-0.00017806	486.2916347943509	21.994	0.072229	21.994	21.97	22.043	0	1323	46	0.8228144	0.027692616	0.8228144	334.24768		11.24942	0.0070535	-0.00042487	0.00075972	NaN	25.681	100	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9168.8			13023	2527	7480	7643							0.08343511245789159
LADEVITVF	9	Unmodified	_LADEVITVF_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5455392524001	1	1006.54554	1005.53826	1.6264	0.001637	-0.57833	-0.00058211	1.0481	0.0010549	1006.545265682467	30.825	0.16888	30.825	30.777	30.946	0	219	187	1.4891195	0.11024141	1.4891195	302.3158	0	22.380829						471	8	2	NaN	NaN	NaN	0.043119	1	8808	8808		49.833	0	1	401380			13024	1147	7481	7644	10348	10348					0.03571518491855841
LADGLKVVL	9	Unmodified	_LADGLKVVL_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.2973104771	2	464.29731	926.580068	0.97329	0.0004519	-3.6093	-0.0016758	-2.636	-0.0012239	464.2950046757636	24.888	0.096533	24.888	24.864	24.96	0	1335	37	0.8154261	0.02216971	0.8154261	331.46597	0	9.011841						97	5	3	NaN	NaN	NaN	0.1507	1	6530	6530		28.495	8.0466	1	12853			13025	4905	7482	7645	10349	10349					0.1138411897103424
LADGSIAVL	9	Unmodified	_LADGSIAVL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4931097514001	1	858.49311	857.485833	2.0537	0.0017631	-0.77276	-0.00066341	1.2809	0.0010996	858.4923280173912	26.505	0.12068	26.505	26.481	26.601	0	417	91	1.3715409	0.05364418	1.3715409	279.0948	0	10.916016						227	6	3	NaN	NaN	NaN	0.043119	1	5506	5506		49.833	5.5305	1	32077			13026	7939	7483	7646	10350	10350					0.05138980148910832
LADGSIAVL	9	Unmodified						0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	858.49311	857.485833	1.1982	0.0010286	0.21903	0.00018803	1.4172	0.0012167	858.493622144267	26.504	0.12064	26.494	26.47	26.59	-0.010645	414	100	1.3733286	0.059018016	1.3718091	279.45856		12.009552	-0.0054718	0.00042577	0.00013411	NaN	49.833	250	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34197			13027	7939	7483	7646							0.05138980148910832
LADGTLAIF	9	Unmodified	_LADGTLAIF_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5087598155999	1	920.50876	919.501483	1.0074	0.00092728	0.24303	0.00022371	1.2504	0.001151	920.508659524356	30.994	0.09656	30.994	30.97	31.066	0	300	49	1.4411188	0.028485656	1.4411188	292.94086	0	5.790344						70	5	2	NaN	NaN	NaN	0.094712	1	6409	6409		36.586	5.0254	1	6632.2			13028	3195	7484	7647	10351	10351					0.03851266665935782
LADGTLAIF	9	Unmodified						0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	920.50876	919.501483	1.3804	0.0012707	0.014375	1.3232E-05	1.3948	0.0012839	920.5088377480962	30.993	0.048275	30.988	30.964	31.012	-0.0050716	297	46	1.4428991	0.02669537	1.4413797	293.30273		5.426422	-0.0030628	-0.00013823	0.00013041	NaN	36.586	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6051.1			13029	3195	7484	7647							0.03851266665935782
LADGVPVAL	9	Unmodified	_LADGVPVAL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.4981951292999	1	854.498195	853.490919	0.97027	0.00082909	0.023327	1.9933E-05	0.99359	0.00084902	854.4988239779395	26.915	0.072376	26.904	26.88	26.952	-0.010645	399	55	1.382264	0.032162428	1.3807446	281.2976	0	6.545227						128	4	3	NaN	NaN	NaN	0.043119	1	5303	5303		49.833	10.374	1	14817			13030	6119	7485	7648	10352	10352					0.058312840115036124
LADHGGGG	8	Unmodified	_LADHGGGG_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.15900258825	2	342.159003	682.303452	0.90317	0.00030903	-9.3841	-0.0032109	-8.4809	-0.0029018	342.1553776879333	33.623	0.14477	33.621	33.549	33.694	-0.0018501	1500	70	0.71351165	0.042771637	0.7119922	291.55035	0	17.47705						191	7	2	NaN	NaN	NaN	0.84692	1	2796	2796		1.4396	0.19772	1	18634	+		13031	10414	7486	7649	10353	10353					-0.05040734473186603
LADHTVHVL	9	Unmodified	_LADHTVHVL_					0	0	0		ENST00000568574.1_1_15:30926543-30927454:+|nuORF;ENST00000566362.1_1_15:30922935-30927517:+|nuORF;ENST00000564902.5_1_15:30917016-30927830:+|nuORF;nc|ENSG00000285077|Q3KRB8|ARHGAP11B;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	ENST00000568574.1_1_15:30926543-30927454:+|nuORF	ENST00000568574.1_1_15:30926543-30927454:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.7798162157	2	502.779816	1003.54508	1.7589	0.00088436	-3.0834	-0.0015503	-1.3245	-0.00066591	502.7781156176972	16.566	0.095898	16.566	16.542	16.638	0	1254	40	0.8652351	0.023945808	0.8652351	351.31863	0	9.722931						104	5	3	NaN	NaN	NaN	0.20577	1	8736	8736		24.961	9.4983	1	13380			13032	5815	7487	7650	10354	10354					0.04344876163088429
LADHTVHVL	9	Unmodified	_LADHTVHVL_					0	0	0		ENST00000568574.1_1_15:30926543-30927454:+|nuORF;ENST00000566362.1_1_15:30922935-30927517:+|nuORF;ENST00000564902.5_1_15:30917016-30927830:+|nuORF;nc|ENSG00000285077|Q3KRB8|ARHGAP11B;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	ENST00000568574.1_1_15:30926543-30927454:+|nuORF	ENST00000568574.1_1_15:30926543-30927454:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.7798162157	2	502.779816	1003.54508	1.5943	0.00080156	0.086649	4.3565E-05	1.6809	0.00084512	502.7797075234817	16.658	0.1678	16.645	16.597	16.765	-0.013294	1254	34	0.8652351	0.020261824	0.86371565	351.31863	0	8.227081						145	8	3	NaN	NaN	NaN	0.056143	1	8565	8565		44.302	19.341	1	15044			13033	5815	7487	7650	10355	10355					0.04344876163088429
LADKERVAA	9	Unmodified	_LADKERVAA_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.77727352675	2	486.777274	971.539994	1.9275	0.00093827	-2.1422	-0.0010428	-0.21468	-0.0001045	486.7767726048341	11.836	0.096087	11.836	11.788	11.884	0	1308	37	0.83204526	0.022148132	0.83204526	337.99277	0	8.996979						90	5	2	NaN	NaN	NaN	0.084037	1	7660	7660		38.131	3.6768	1	15182			13034	4499	7488	7651	10356	10356					0.053085723004642205
LADKERVAA	9	Unmodified	_LADKERVAA_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.77727352675	2	486.777274	971.539994	1.3258	0.00064536	-1.5091	-0.00073459	-0.1833	-8.9225E-05	486.7764870308008	11.838	0.16815	11.83	11.758	11.926	-0.0081854	1305	37	0.83389086	0.022145689	0.8323714	338.7425	0	8.996002						169	8	3	NaN	NaN	NaN	0.04743	1	7512	7512		48.002	6.2177	1	17930			13035	4499	7488	7651	10357	10357					0.053085723004642205
LADLESPSI	9	Unmodified	_LADLESPSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4935036819	1	944.493504	943.486227	1.8387	0.0017366	-1.578	-0.0014905	0.26065	0.00024618	944.4921044357706	24.14	0.16889	24.127	24.055	24.224	-0.012749	342	49	1.4161754	0.028522015	1.4146559	287.76257	0	5.7955627						108	8	2	NaN	NaN	NaN	0.14301	1	6767	6767		29.598	1.8095	1	6913.3	+		13036	10837	7489	7652	10358	10358					0.012223550780959158
LADMQDHAPA	10	Unmodified	_LADMQDHAPA_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7425734296501	2	534.742573	1067.47059	1.1538	0.00061701	-3.1012	-0.0016584	-1.9474	-0.0010413	534.7396312694387	21.729	0.1204	21.715	21.643	21.764	-0.013897	1278	55	0.85049206	0.033196986	0.8489726	345.05255	0	13.468353						120	6	3	NaN	NaN	NaN	0.62764	1	11162	11162		13.003	0.41496	1	10599			13037	3044	7490	7653	10359	10359					-0.06044254710604946
LADYLVPIL	9	Unmodified	_LADYLVPIL_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.6026602008	1	1016.60266	1015.59538	1.3368	0.001359	-2.798	-0.0028444	-1.4612	-0.0014855	1016.6015476019514	35.313	0.072357	35.313	35.289	35.361	0	132	67	1.5405227	0.03894806	1.5405227	312.70963	0	7.9060364						146	4	3	NaN	NaN	NaN	0.20577	1	9217	9217		24.961	2.8347	1	18131			13038	4734	7491	7654	10360	10360					0.08820985768215905
LAEGHPDP	8	Unmodified	_LAEGHPDP_					0	0	0		ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.20086740295	2	418.200867	834.387182	1.2858	0.00053771	-2.4003	-0.0010038	-1.1145	-0.00046609	418.1998232022875	20.887	0.096344	20.887	20.862	20.959	0	1350	52	0.80618626	0.031425714	0.80618626	328.2385	0	12.794983						101	5	2	NaN	NaN	NaN	0.8439	1	5190	5190		3.1533	0.69183	1	10746			13039	2227	7492	7655	10361	10361					-0.036636230961448746
LAEGHPDP	8	Unmodified	_LAEGHPDP_					0	0	0		ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	418.20086740295	2	418.200867	834.387182	0.86513	0.0003618	-0.31511	-0.00013178	0.55001	0.00023002	418.20086880060194	20.911	0.096373	20.897	20.849	20.945	-0.014086	1347	52	0.8080346	0.031425714	0.8065152	328.99103	0	12.794983						88	5	2	NaN	NaN	NaN	0.82332	1	5067	5067		6.0903	0.62448	1	7570.6			13040	2227	7492	7655	10362	10362					-0.036636230961448746
LAEGITWVL	9	Unmodified	_LAEGITWVL_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5666090455001	1	1001.56661	1000.55933	0.91823	0.00091967	1.574	0.0015764	2.4922	0.0024961	1001.5675661490051	33.358	0.096504	33.355	33.331	33.428	-0.0024796	201	76	1.4997677	0.04436958	1.4982482	304.49802	0	9.008362						210	5	3	NaN	NaN	NaN	0.16171	1	8456	8456		27.789	2.8278	1	19661			13041	3405	7493	7656	10363	10363					0.059075285913763764
LAEGLRTVL	9	Unmodified	_LAEGLRTVL_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.29784179334996	2	486.297842	970.581131	1.9263	0.00093673	-2.7054	-0.0013156	-0.77919	-0.00037892	486.29645426067503	22.332	0.1446	22.332	22.308	22.453	0	1326	46	0.8209676	0.027701616	0.8209676	333.49744	0	11.253082						185	7	4	NaN	NaN	NaN	0.3106	1	7637	7637		18.233	3.8085	1	45032			13042	1801	7494	7657	10364	10364					0.09466333339935318
LAEGLRTVL	9	Unmodified	_LAEGLRTVL_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.29784179334996	2	486.297842	970.581131	1.3283	0.00064593	-2.7982	-0.0013608	-1.4699	-0.00071482	486.29617878516876	22.356	0.12026	22.342	22.294	22.414	-0.013731	1323	43	0.8228144	0.025853395	0.82129496	334.24762	0	10.502319						151	6	3	NaN	NaN	NaN	0.34188	1	7494	7494		16.226	2.1842	1	41520			13043	1801	7494	7657	10365	10365					0.09466333339935318
LAEPAPAAL	9	Unmodified	_LAEPAPAAL_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4825450651	1	852.482545	851.475269	1.8424	0.0015706	0.013164	1.1222E-05	1.8556	0.0015819	852.4824100811111	22.284	0.07239	22.284	22.26	22.332	0	459	76	1.3464937	0.044743896	1.3464937	274.02844	0	9.105957						129	4	2	NaN	NaN	NaN	0.14301	1	5410	5410		29.598	2.8668	1	13244			13044	5937	7495	7658	10366	10366					0.04358997494466621
LAEPAPAAL	9	Unmodified	_LAEPAPAAL_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4825450651	1	852.482545	851.475269	1.0137	0.0008642	-0.074883	-6.3837E-05	0.93887	0.00080037	852.4824733237239	22.308	0.048212	22.294	22.27	22.318	-0.013731	459	85	1.3464937	0.05011058	1.3449743	274.02844	0	10.19812						143	3	3	NaN	NaN	NaN	0.20577	1	5277	5277		24.961	9.7856	1	13025			13045	5937	7495	7658	10367	10367					0.04358997494466621
LAEVESLWF	9	Unmodified	_LAEVESLWF_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.28185737815	2	547.281857	1092.54916	1.161	0.0006354	-3.3357	-0.0018256	-2.1747	-0.0011902	547.2790742924285	20.79	0.19281	20.79	20.67	20.862	0	1242	64	0.87260187	0.038656652	0.87260187	353.91916	0	15.678772						172	9	2	NaN	NaN	NaN	0.51576	1	12504	12504		8.962	0	1	25641	+		13046	11156	7496	7659	10368	10368					0.006589208661353041
LAFQCDQPS	9	Unmodified	_LAFQCDQPS_					0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4455076318001	1	1008.44551	1007.43823	1.0285	0.0010372	1.2366	0.001247	2.2651	0.0022842	1008.4474701172081	33.142	0.096523	33.142	33.094	33.19	0	243	40	1.4749115	0.02309668	1.4749115	299.42368	0	4.688904						96	5	2	NaN	NaN	NaN	0.27608	1	8865	8865		20.449	4.986	1	8871	+		13047	11108	7497	7660	10369	10369					-0.06519042113598061
LAFQCDQPS	9	Unmodified	_LAFQCDQPS_					0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4455076318001	1	1008.44551	1007.43823	1.3497	0.0013611	0.55504	0.00055973	1.9048	0.0019209	1008.4461507354563	33.14	0.072365	33.138	33.114	33.186	-0.0024757	240	49	1.4766881	0.028422117	1.4751687	299.78436	0	5.7700195						72	4	2	NaN	NaN	NaN	0.27608	1	8693	8693		20.449	2.6497	1	6408.1	+		13048	11108	7497	7660	10370	10370					-0.06519042113598061
LAFQCDQPS	9	Unmodified						0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.44551	1007.43823	1.0285	0.0010372	1.2366	0.001247	2.2651	0.0022842	1008.4474701172081	33.142	0.096523	33.142	33.094	33.19	0	243	40	1.4749115	0.02309668	1.4749115	299.42368		4.688904	0.0018964	0.00043463	-0.00012861	NaN	20.449	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8871	+		13049	11108	7497	7660							-0.06519042113598061
LAFQCDQPS	9	Unmodified						0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1008.44551	1007.43823	1.3497	0.0013611	0.55504	0.00055973	1.9048	0.0019209	1008.4461507354563	33.14	0.072365	33.138	33.114	33.186	-0.0024757	240	49	1.4766881	0.028422117	1.4751687	299.78436		5.7700195	-0.0018964	-0.00025266	0.00012861	NaN	20.449	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6408.1	+		13050	11108	7497	7660							-0.06519042113598061
LAFQEDSRSTL	11	Unmodified	_LAFQEDSRSTL_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.81986662295	2	633.819867	1265.62518	1.8047	0.0011439	-2.8408	-0.0018006	-1.0361	-0.00065668	633.8181125746239	19.948	0.12023	19.948	19.924	20.045	0	1143	67	0.9332562	0.0403468	0.9332562	377.87463	0	16.336426						141	6	4	NaN	NaN	NaN	0.019309	1	18124	18124		62.675	35.628	1	15727			13051	5312	7498	7661	10371	10371					0.00299272975621534
LAFQEDSRSTL	11	Unmodified	_LAFQEDSRSTL_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.81986662295	2	633.819867	1265.62518	1.5912	0.0010086	-1.4928	-0.00094615	0.098473	6.2414E-05	633.8195637578722	19.948	0.072289	19.934	19.909	19.982	-0.014141	1146	46	0.93142134	0.027519584	0.9299019	377.13168	0	11.14267						120	4	3	NaN	NaN	NaN	0.15228	1	17323	17323		34.766	10.366	1	13811			13052	5312	7498	7661	10372	10372					0.00299272975621534
LAFTAAGK	8	Unmodified	_LAFTAAGK_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.72652104745003	2	389.726521	777.438489	-0.31682	-0.00012347	8.6698	0.0033788	8.353	0.0032554	389.72977225335313	53.753	0.18528	53.753	53.712	53.897	-0.00059128	1395	55	0.7784366	0.03333026	0.77691716	317.31516	0	13.586456						231	8	4	NaN	NaN	NaN	0.84727	1	4387	4387		1.2418	0	1	81648	+		13053	9639	7499	7662	10373	10373					0.04086745668575986
LAFTAAGK	8	Unmodified						0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	389.726521	777.438489	-0.31682	-0.00012347	8.6698	0.0033788	8.353	0.0032554	389.72977225335313	53.753	0.18528	53.753	53.712	53.897	-0.00059128	1395	55	0.7784366	0.03333026	0.77691716	317.31516		13.586456	-0.013254	0.0010589	-0.00075972	NaN	1.2418	231	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81648	+		13054	9639	7499	7662							0.04086745668575986
LAGAAVCA	8	Unmodified	_LAGAAVCA_					0	0	0		ENST00000430010.1_1_2:55451487-55451931:+|nuORF	ENST00000430010.1_1_2:55451487-55451931:+|nuORF	ENST00000430010.1_1_2:55451487-55451931:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021	1	675.349422	674.342146	0.71406	0.00048224	7.1407	0.0048225	7.8548	0.0053047	675.3541665047816	28.049	0.14481	28.04	27.992	28.137	-0.0089779	726	115	1.1863867	0.06876719	1.1848673	242.4499	0	14.053253						283	7	2	NaN	NaN	NaN	0.84651	1	2630	2630		1.6704	0	1	25027			13055	6962	7500	7663	10374	10374					-0.008051451630308293
LAGAGALL	8	Unmodified	_LAGAGALL_					0	0	0			REV__MYEOV|p.Y229Sfs*3|1|0.12|ENSG00000172927|chr11:69296135-69296136|-/CCCC|frameshift_variant	REV__MYEOV|p.Y229Sfs*3|1|0.12|ENSG00000172927|chr11:69296135-69296136|-/CCCC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.4243019047002	1	685.424302	684.417025	1.0234	0.00070147	5.3225	0.0036482	6.346	0.0043497	685.4274286513256	32.344	0.14481	32.341	32.292	32.437	-0.0037613	633	79	1.2423272	0.04685521	1.2408078	253.80759	0	9.57251						282	7	3	NaN	NaN	NaN	0.81214	1	2857	2857		7.5902	0	1	42301	+		13056	10662	7501	7664	10375	10375					0.0621936063986368
LAGAGALL	8	Unmodified						0	0	0			REV__MYEOV|p.Y229Sfs*3|1|0.12|ENSG00000172927|chr11:69296135-69296136|-/CCCC|frameshift_variant	REV__MYEOV|p.Y229Sfs*3|1|0.12|ENSG00000172927|chr11:69296135-69296136|-/CCCC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	685.424302	684.417025	1.0234	0.00070147	5.3225	0.0036482	6.346	0.0043497	685.4274286513256	32.344	0.14481	32.341	32.292	32.437	-0.0037613	633	79	1.2423272	0.04685521	1.2408078	253.80759		9.57251	-0.0024397	-0.00041191	-0.00075972	NaN	7.5902	282	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42301	+		13057	10662	7501	7664							0.0621936063986368
LAGFGGVG	8	Unmodified	_LAGFGGVG_					0	0	0			REV__nc|ENSG00000134873|P78369-3|CLDN10	REV__nc|ENSG00000134873|P78369-3|CLDN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479001	1	677.361702	676.354425	1.3005	0.00088093	-9.7319	-0.006592	-8.4314	-0.0057111	677.35503667798	19.178	0.24037	19.164	19.092	19.332	-0.014141	675	79	1.2170867	0.04693544	1.2155672	248.70914	0	9.591156						194	11	2	NaN	NaN	NaN	0.83849	1	2676	2676		4.0537	0	1	15936	+		13058	13120	7502	7665	10376	10376					0.003302145716702398
LAGFGGVG	8	Unmodified						0	0	0			REV__nc|ENSG00000134873|P78369-3|CLDN10	REV__nc|ENSG00000134873|P78369-3|CLDN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	677.361702	676.354425	1.3005	0.00088093	-9.7319	-0.006592	-8.4314	-0.0057111	677.35503667798	19.178	0.24037	19.164	19.092	19.332	-0.014141	675	79	1.2170867	0.04693544	1.2155672	248.70914		9.591156	-0.0081469	0.00079651	0.00014245	NaN	4.0537	194	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15936	+		13059	13120	7502	7665							0.003302145716702398
LAGGLVLC	8	Unmodified	_LAGGLVLC_					0	0	0			REV__ENSG00000203772|ENST00000685335|SPRN	REV__ENSG00000203772|ENST00000685335|SPRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.4276727230999	1	745.427673	744.420396	1.3029	0.00097125	-5.4621	-0.0040716	-4.1592	-0.0031004	745.4235173237114	30.487	0.048231	30.487	30.463	30.511	0	555	55	1.2891023	0.032337785	1.2891023	262.94727	0	6.596161						87	3	2	NaN	NaN	NaN	0.30174	1	3978	3978		41.978	0	1	10021	+		13060	11215	7503	7666	10377	10377					0.03796287422187561
LAGGLVLC	8	Unmodified						0	0	0			REV__ENSG00000203772|ENST00000685335|SPRN	REV__ENSG00000203772|ENST00000685335|SPRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.427673	744.420396	1.3029	0.00097125	-5.4621	-0.0040716	-4.1592	-0.0031004	745.4235173237114	30.487	0.048231	30.487	30.463	30.511	0	555	55	1.2891023	0.032337785	1.2891023	262.94727		6.596161	0.015437	3.7669E-06	0.00075972	NaN	41.978	87	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10021	+		13061	11215	7503	7666							0.03796287422187561
LAGHAAAL	8	Unmodified	_LAGHAAAL_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4147998509001	1	723.4148	722.407523	0.75305	0.00054477	-10.588	-0.0076595	-9.8349	-0.0071147	723.4071027222165	31.379	0.096512	31.374	31.35	31.446	-0.0050716	591	94	1.26753	0.05579722	1.2660105	258.68945	0	11.387604						273	5	3	NaN	NaN	NaN	0.81214	1	3564	3564		7.5902	0	1	28943			13062	1538	7504	7667	10378	10378					0.03521592354331915
LAGKGPNP	8	Unmodified	_LAGKGPNP_					0	0	0			REV__ENSG00000107249|ENST00000381971|GLIS3	REV__ENSG00000107249|ENST00000381971|GLIS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4253645372	1	753.425365	752.418088	2.0253	0.0015259	-7.5378	-0.0056791	-5.5125	-0.0041533	753.4205062981493	29.256	0.048244	29.248	29.248	29.296	-0.0077229	537	43	1.2998781	0.02513814	1.2983587	265.09433	0	5.126648						50	3	2	NaN	NaN	NaN	0.84207	1	4032	4032		3.5732	0	1	3310.7	+		13063	9008	7505	7668	10379	10379					0.031975750087553934
LAGKPAAL	8	Unmodified	_LAGKPAAL_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.4665010703999	1	740.466501	739.459225	1.8349	0.0013587	-2.7506	-0.0020367	-0.91574	-0.00067808	740.46463349228	29.231	0.33785	29.224	29.175	29.513	-0.0077209	612	175	1.2549332	0.104590416	1.2534138	256.0086	0	21.336624						686	15	5	NaN	NaN	NaN	0.84876	1	3828	3828		0.39566	0	1	393090	+		13064	10936	7506	7669	10380	10380					0.07907336048208435
LAGLEYVL	8	Unmodified	_LAGLEYVL_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.5029461562	1	877.502946	876.49567	1.0455	0.00091747	0.39651	0.00034794	1.4421	0.0012654	877.5032194215041	30.969	0.16897	30.964	30.915	31.084	-0.0050716	399	76	1.382264	0.044648647	1.3807446	281.18054	0	9.0824585						261	8	3	NaN	NaN	NaN	0.15767	1	5631	5631		53.324	11.864	1	43559			13065	5709	7507	7670	10381	10381					0.05248168154275845
LAGLEYVL	8	Unmodified						0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	877.502946	876.49567	1.0411	0.00091354	0.4315	0.00037864	1.4726	0.0012922	877.5031331559724	30.97	0.19308	30.97	30.922	31.115	0	399	79	1.382264	0.04644203	1.382264	281.18054		9.447266	0.0030475	1.6492E-05	0.00075972	NaN	53.324	260	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42738			13066	5709	7507	7670							0.05248168154275845
LAGTGELFI	9	Unmodified	_LAGTGELFI_					0	0	0			REV__tr|U7SM17|U7SM17_FUSNUAmidinotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02017PE=4SV=1	REV__tr|U7SM17|U7SM17_FUSNUAmidinotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02017PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5087598156	1	920.50876	919.501483	1.3804	0.0012707	0.014375	1.3232E-05	1.3948	0.0012839	920.5088377480962	30.993	0.048275	30.988	30.964	31.012	-0.0050716	297	46	1.4428991	0.02669537	1.4413797	293.30273	0	5.426422						59	3	2	NaN	NaN	NaN	0.45297	1	6282	6282		11.548	1.8025	1	6051.1	+		13067	13429	7508	7671	10382	10382					0.038512666659471506
LAGTPAPP	8	Unmodified	_LAGTPAPP_					0	0	0		ENST00000590083.5_1_19:1229180-1230152:-|nuORF;ENSG00000099625|ENST00000650044|CBARP;ENST00000574733.5_1_16:4519403-4524387:-|nuORF	ENST00000590083.5_1_19:1229180-1230152:-|nuORF;ENST00000574733.5_1_16:4519403-4524387:-|nuORF	ENST00000574733.5_1_16:4519403-4524387:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4035664626	1	723.403566	722.39629	0.56487	0.00040863	4.9211	0.0035599	5.4859	0.0039686	723.4074761083646	31.38	0.12069	31.38	31.356	31.477	0	588	115	1.2693287	0.06841481	1.2693287	259.05658	0	13.962753						277	6	2	NaN	NaN	NaN	0.82332	1	3646	3646		6.0903	0	1	31056			13068	1159;7657	7509	7672	10383	10383					0.023987702601857563
LAHGADPTL	9	Unmodified	_LAHGADPTL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.73761705	2	447.737617	893.460681	1.1252	0.0005038	-1.8702	-0.00083734	-0.74496	-0.00033355	447.7368961981289	15.582	0.12008	15.582	15.558	15.678	0	1395	64	0.7784366	0.03886634	0.7784366	316.60126	0	15.807495						144	6	4	NaN	NaN	NaN	0.36492	1	5975	5975		15.175	1.1338	1	15793			13069	1650	7510	7673	10384	10384					0.009689253463307068
LAHGADPTL	9	Unmodified						0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	447.737617	893.460681	1.5345	0.00068705	-1.87	-0.00083728	-0.33553	-0.00015023	447.7371813225794	15.604	0.14392	15.592	15.544	15.688	-0.012201	1404	73	0.77288127	0.04443556	0.7713618	314.3418		18.07257	0.00486	4.331E-08	-0.0035374	NaN	15.175	147	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13144			13070	1650	7510	7673							0.009689253463307068
LAHREQVAL	9	Unmodified	_LAHREQVAL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7985402851001	2	518.79854	1035.58253	2.2084	0.0011457	-2.927	-0.0015185	-0.71855	-0.00037278	518.7974230215807	13.925	0.144	13.925	13.877	14.021	0	1272	67	0.854179	0.0405609	0.854179	346.6843	0	16.462433						272	7	4	NaN	NaN	NaN	0.25424	1	10025	10025		21.85	5.2662	1	49088			13071	4489	7511	7674	10385	10385					0.06615967428706426
LAHREQVAL	9	Unmodified	_LAHREQVAL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7985402851001	2	518.79854	1035.58253	1.358	0.00070453	-6.5705	-0.0034088	-5.2125	-0.0027043	518.7954838765841	14.093	0.21575	14.082	13.986	14.202	-0.010672	1269	61	0.8560222	0.03687364	0.85450274	347.4324	0	14.96582						237	10	2	NaN	NaN	NaN	0.25424	1	9818	9818		21.85	4.0701	1	57828			13072	4489	7511	7674	10386	10386					0.06615967428706426
LAIDTEERL	9	Unmodified	_LAIDTEERL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.28767103755	2	530.287671	1058.56079	1.4533	0.00077068	-1.4404	-0.00076384	0.012903	6.8421E-06	530.2869133046026	20.573	0.16862	20.573	20.549	20.718	0	1242	52	0.87260187	0.031300247	0.87260187	354.06067	0	12.700165						108	8	2	NaN	NaN	NaN	0.34922	1	11037	11037		15.822	1.7803	1	38917			13073	1977	7512	7675	10387	10387					0.03385117889456524
LAIDTEERL	9	Unmodified	_LAIDTEERL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.28767103755	2	530.287671	1058.56079	0.80517	0.00042697	-1.377	-0.00073019	-0.5718	-0.00030322	530.2871652004833	20.574	0.072237	20.559	20.535	20.608	-0.014086	1242	55	0.87260187	0.03313607	0.8710824	354.06067	0	13.445038						122	4	2	NaN	NaN	NaN	0.057383	1	10798	10798		43.776	19.375	1	43545			13074	1977	7512	7675	10388	10388					0.03385117889456524
LAIETEAEL	9	Unmodified	_LAIETEAEL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5197184324	1	988.519718	987.512442	2.3113	0.0022848	-1.2971	-0.0012822	1.0143	0.0010026	988.5183010647895	25.009	0.21714	25.009	24.985	25.202	0	225	118	1.4855686	0.069312215	1.4855686	301.66937	0	14.074982						579	10	4	NaN	NaN	NaN	0.00020136	1	8126	8126		116.74	36.097	1	127080			13075	425	7513	7676	10389	10389					0.01818624249574441
LAIETEAEL	9	Unmodified	_LAIETEAEL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5197184324	1	988.519718	987.512442	1.9336	0.0019114	-0.46021	-0.00045493	1.4734	0.0014565	988.5194805033527	25.008	0.14476	24.996	24.972	25.117	-0.012011	225	124	1.4855686	0.07287443	1.4840492	301.66934	0	14.79837						506	7	4	NaN	NaN	NaN	3.2142E-07	1	7965	7965		129.63	48.989	1	107040			13076	425	7513	7676	10390	10390					0.01818624249574441
LAIMTEAQL	9	Unmodified	_LAIMTEAQL_					0	0	0		nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA	nc|ENSG00000100084|P54198-2|HIRA	nc|ENSG00000100084|P54198-2|HIRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.5335943576	1	989.533594	988.526318	1.7751	0.0017565	-1.8713	-0.0018517	-0.096193	-9.5186E-05	989.5329660938883	27.06	0.048292	27.06	27.06	27.109	0	186	70	1.5086359	0.040802717	1.5086359	306.34924	0	8.285553						98	3	3	NaN	NaN	NaN	0.31471	1	8168	8168		17.97	0.17071	1	8918.8			13077	1190	7514	7677	10391	10391					0.03159578477016112
LAIMTEAQL	9	Unmodified						0	0	0		nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA	nc|ENSG00000100084|P54198-2|HIRA	nc|ENSG00000100084|P54198-2|HIRA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	989.533594	988.526318	1.5569	0.0015406	-1.0113	-0.0010007	0.54569	0.00053998	989.5320293156581	27.084	0.072412	27.074	27.049	27.122	-0.010124	186	64	1.5086359	0.037246704	1.5071164	306.3492		7.563446	0.0066295	0.00039191	-0.00075972	NaN	17.97	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8000.7			13078	1190	7514	7677							0.03159578477016112
LAINFREI	8	Unmodified	_LAINFREI_					0	0	0			REV__ENST00000544392.5_1_10:120445642-120485819:-|nuORF	REV__ENST00000544392.5_1_10:120445642-120485819:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.28473441809996	2	488.284734	974.554916	1.9758	0.00096475	-3.2734	-0.0015984	-1.2976	-0.00063361	488.2830276607466	25.371	0.096533	25.371	25.346	25.443	0	1338	37	0.81357855	0.022172093	0.81357855	330.47696	0	9.006348						70	5	2	NaN	NaN	NaN	0.67593	1	7745	7745		20.555	0	1	8218.7	+		13079	10040	7515	7678	10392	10392					0.06662064168460802
LAIQEIMSL	9	Unmodified	_LAIQEIMSL_					0	0	0		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;ENST00000532793.1_1_11:70208405-70208696:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5648944860001	1	1017.56489	1016.55762	1.9294	0.0019632	0.23153	0.00023559	2.1609	0.0021988	1017.5656864431132	33.214	0.36198	33.214	33.069	33.431	0	192	112	1.5050892	0.06558359	1.5050892	305.5131	0	13.312592						824	16	4	NaN	NaN	NaN	0.12866	1	9249	9249		31.675	11.162	1	159810			13080	2717	7516	7679	10393	10393					0.050001515111148365
LAIQEIMSL	9	Oxidation (M)	_LAIQEIM(Oxidation (M))SL_		LAIQEIM(1)SL		LAIQEIM(53)SL	0	0	1		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;ENST00000532793.1_1_11:70208405-70208696:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5598091081	1	1033.55981	1032.55253	1.6046	0.0016585	-1.3816	-0.001428	0.22302	0.0002305	1033.5585221478173	27.688	0.12067	27.688	27.688	27.808	0	165	70	1.5210435	0.040763736	1.5210435	308.68762	0	8.272797						132	6	2	NaN	NaN	NaN	0.03533	1	9891	9891		53.14	19.715	1	16978			13081	2717	7516	7680	10394	10394		313			0.03755847648494637
LAIQEIMSL	9	Oxidation (M)	_LAIQEIM(Oxidation (M))SL_		LAIQEIM(1)SL		LAIQEIM(72)SL	0	0	1		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;ENST00000532793.1_1_11:70208405-70208696:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5598091081	1	1033.55981	1032.55253	1.0692	0.0011051	-2.7874	-0.002881	-1.7182	-0.0017759	1033.5593745460487	27.711	0.096502	27.702	27.677	27.774	-0.009552	162	73	1.5228153	0.042533755	1.5212959	309.04718	0	8.632019						140	5	3	NaN	NaN	NaN	0.019939	1	9685	9685		72.076	11.094	1	14671			13082	2717	7516	7680	10395	10395		313			0.03755847648494637
LAIQIDEVL	9	Unmodified	_LAIQIDEVL_					0	0	0		ENST00000544429.5_1_12:124090532-124092210:+|nuORF;ENST00000542286.5_1_12:124086695-124092071:+|nuORF;ENSG00000111364|ENST00000238146|DDX55	ENST00000544429.5_1_12:124090532-124092210:+|nuORF	ENST00000544429.5_1_12:124090532-124092210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5877384181	1	1013.58774	1012.58046	1.301	0.0013187	-1.6559	-0.0016784	-0.35491	-0.00035973	1013.5869171844605	31.621	0.096535	31.621	31.597	31.694	0	201	58	1.4997677	0.033706546	1.4997677	304.4489	0	6.842346						185	5	3	NaN	NaN	NaN	0.02857	1	9095	9095		60.982	13.5	1	27058			13083	1805	7517	7681	10396	10396					0.07467493900230693
LAIQIDEVL	9	Unmodified	_LAIQIDEVL_					0	0	0		ENST00000544429.5_1_12:124090532-124092210:+|nuORF;ENST00000542286.5_1_12:124086695-124092071:+|nuORF;ENSG00000111364|ENST00000238146|DDX55	ENST00000544429.5_1_12:124090532-124092210:+|nuORF	ENST00000544429.5_1_12:124090532-124092210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5877384181	1	1013.58774	1012.58046	0.91236	0.00092476	0.09274	9.4E-05	1.0051	0.0010188	1013.5885773341726	31.62	0.12067	31.616	31.568	31.688	-0.0044155	198	55	1.5015416	0.031927466	1.5000222	304.80902	0	6.4811707						176	6	3	NaN	NaN	NaN	0.021751	1	8917	8917		69.782	5.824	1	26375			13084	1805	7517	7681	10397	10397					0.07467493900230693
LAIVEEEM	8	Unmodified	_LAIVEEEM_					0	0	0		ENST00000355774.6_2_14:75514533-75514686:-|nuORF	ENST00000355774.6_2_14:75514533-75514686:-|nuORF	ENST00000355774.6_2_14:75514533-75514686:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.23351858955	2	467.233519	932.452484	0.23461	0.00010962	-0.89186	-0.00041671	-0.65726	-0.00030709	467.23370353825436	29.618	0.12066	29.61	29.562	29.683	-0.0070648	1314	55	0.8283535	0.03324014	0.8268341	336.68988	0	13.510681						124	6	4	NaN	NaN	NaN	0.84876	1	6519	6519		0.39566	0	1	12811			13085	6566	7518	7682	10398	10398					-0.01644389685304759
LALAEFWA	8	Unmodified	_LALAEFWA_					0	0	0		ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.7474534548	2	460.747453	919.480354	2.1225	0.00097791	-6.7261	-0.003099	-4.6036	-0.0021211	460.74457366190546	23.465	0.072453	23.451	23.427	23.5	-0.013294	1302	37	0.8357362	0.022143304	0.8342168	339.76025	0	9.002136						44	4	2	NaN	NaN	NaN	0.80692	1	6277	6277		8.2903	0.74991	1	3174.4			13086	2474	7519	7683	10399	10399					0.01739301357088152
LALETEWEL	9	Unmodified	_LALETEWEL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5619175980999	1	1103.56192	1102.55464	1.0521	0.0011611	0.025783	2.8454E-05	1.0779	0.0011895	1103.5617277808253	31.404	0.16894	31.404	31.356	31.525	0	78	115	1.5723488	0.06716704	1.5723488	318.83255	0	13.619812						412	8	4	NaN	NaN	NaN	0.0023856	1	12944	12944		109.86	54.364	1	94246			13087	2532	7520	7684	10400	10400					0.007465996579412604
LALETEWEL	9	Unmodified	_LALETEWEL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5619175980999	1	1103.56192	1102.55464	1.1559	0.0012756	-0.86721	-0.00095702	0.28866	0.00031855	1103.5608676447473	31.403	0.16891	31.398	31.35	31.519	-0.0050716	75	109	1.5741152	0.06362522	1.5725957	319.19073	0	12.901611						397	8	4	NaN	NaN	NaN	0.0040938	1	12608	12608		104.71	52.087	1	86478			13088	2532	7520	7684	10401	10401					0.007465996579412604
LALFGFLW	8	Unmodified	_LALFGFLW_					0	0	0		ENST00000568202.5_1_16:5083828-5083915:-|nuORF;nc|ENSG00000103174|Q9UK23-3|NAGPA;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA	ENST00000568202.5_1_16:5083828-5083915:-|nuORF	ENST00000568202.5_1_16:5083828-5083915:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5447513914002	1	966.544751	965.537475	1.4799	0.0014304	-1.9522	-0.0018869	-0.47224	-0.00045644	966.5434571036476	41.448	0.048103	41.456	41.456	41.505	0.0082588	873	31	1.0975848	0.018172503	1.0960654	222.95262	0	3.6913757						52	3	2	NaN	NaN	NaN	0.84651	1	7357	7357		1.6704	0.42852	1	3215.5			13089	1418	7521	7685	10402	10402					0.05332768633468277
LALGSGVP	8	Unmodified	_LALGSGVP_					0	0	0			REV__ELF4|p.S415L|2|0.32|ENSG00000102034|chrX:130067469-130067469|G/A|missense_variant	REV__ELF4|p.S415L|2|0.32|ENSG00000102034|chrX:130067469-130067469|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	357.21324649670004	2	357.213246	712.41194	1.4383	0.00051377	1.0621	0.00037941	2.5004	0.00089318	357.2133409649578	20.718	0.21677	20.704	20.68	20.897	-0.014086	1404	79	0.77288127	0.048180282	0.7713618	315.5477	0	19.670776						314	10	3	NaN	NaN	NaN	0.84692	1	3406	3406		1.4396	0	1	67449	+		13090	8342	7522	7686	10403	10403					0.044230567772387985
LALGSGVP	8	Unmodified						0	0	0			REV__ELF4|p.S415L|2|0.32|ENSG00000102034|chrX:130067469-130067469|G/A|missense_variant	REV__ELF4|p.S415L|2|0.32|ENSG00000102034|chrX:130067469-130067469|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	357.213246	712.41194	1.4383	0.00051377	1.0621	0.00037941	2.5004	0.00089318	357.2133409649578	20.718	0.21677	20.704	20.68	20.897	-0.014086	1404	79	0.77288127	0.048180282	0.7713618	315.5477		19.670776	0.0051932	-6.9815E-05	0.00016637	NaN	1.4396	314	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67449	+		13091	8342	7522	7686							0.044230567772387985
LALPGALC	8	Unmodified	_LALPGALC_					0	0	0			REV__ENST00000359944.10_1_3:179322640-179341825:+|nuORF	REV__ENST00000359944.10_1_3:179322640-179341825:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.4276727230999	1	757.427673	756.420396	1.7042	0.0012908	-6.1729	-0.0046755	-4.4687	-0.0033847	757.4230341437172	34.829	0.096432	34.828	34.804	34.901	-0.0006485	534	49	1.3016734	0.02872634	1.300154	265.4353	0	5.857849						91	5	2	NaN	NaN	NaN	0.81214	1	4097	4097		7.5902	0	1	6843.4	+		13092	11837	7523	7687	10404	10404					0.032442874221942475
LALRHPVFH	9	Unmodified	_LALRHPVFH_					0	0	0		ENST00000395648.7_2_11:44954150-44954441:-|nuORF	ENST00000395648.7_2_11:44954150-44954441:-|nuORF	ENST00000395648.7_2_11:44954150-44954441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3194429027001	2	545.319443	1088.62433	1.0962	0.00059779	-5.8682	-0.0032001	-4.772	-0.0026023	545.3166963844908	30.052	0.33786	30.045	29.876	30.214	-0.0064106	1131	97	0.94059354	0.058730662	0.93907416	381.51312	0	23.821686						373	15	3	NaN	NaN	NaN	0.65388	1	12038	12038		3.1533	0	1	52687			13093	6787	7524	7688	10405	10405					0.08356567907890167
LALRHPVFH	9	Unmodified						0	0	0		ENST00000395648.7_2_11:44954150-44954441:-|nuORF	ENST00000395648.7_2_11:44954150-44954441:-|nuORF	ENST00000395648.7_2_11:44954150-44954441:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.319443	1088.62433	1.3983	0.0007625	-7.1638	-0.0039066	-5.7655	-0.0031441	545.315718530222	30.318	0.1448	30.318	30.294	30.439	0	1158	58	0.92408	0.034873188	0.92408	374.8151		14.144897	0.13642	-0.00087242	-0.007497	NaN	3.1533	192	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15929			13094	6787	7524	7688							0.08356567907890167
LALTMALM	8	Unmodified	_LALTMALM_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-5|TLR9	REV__nc|ENSG00000239732|Q9NR96-5|TLR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.4729083562002	1	863.472908	862.465632	-0.43933	-0.00037935	7.1374	0.0061629	6.6981	0.0057836	863.4788015851082	56.779	0.072136	56.778	56.754	56.826	-0.00056458	300	85	1.4411188	0.049876332	1.4395994	293.22644	0	10.1484375						145	4	2	NaN	NaN	NaN	0.8439	1	5427	5427		3.1533	0	1	13757	+		13095	11335	7525	7689	10406	10406					0.02889769893090488
LAMNRLDFLK	10	Unmodified	_LAMNRLDFLK_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.84463319795	2	610.844633	1219.67471	0.4329	0.00026443	-6.8088	-0.0041591	-6.3759	-0.0038947	610.8405105858369	37.626	0.072205	37.626	37.578	37.65	0	1149	43	0.92958635	0.025691867	0.92958635	376.54172	0	10.40686						62	4	2	NaN	NaN	NaN	0.5917	1	16978	16978		15.463	5.7167	1	6018.8	+		13096	11351	7526	7690	10407	10407					0.07366309450708286
LAMNRLDFLK	10	Unmodified						0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	610.844633	1219.67471	0.4329	0.00026443	-6.8088	-0.0041591	-6.3759	-0.0038947	610.8405105858369	37.626	0.072205	37.626	37.578	37.65	0	1149	43	0.92958635	0.025691867	0.92958635	376.54172		10.40686	0.011839	0.00096423	-0.0001578	NaN	15.463	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6018.8	+		13097	11351	7526	7690							0.07366309450708286
LAMNRLDFLK	10	Unmodified						0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	610.844633	1219.67471	1.0724	0.00065505	-8.4638	-0.0051701	-7.3915	-0.004515	610.8399487889574	37.6	0.12033	37.603	37.579	37.699	0.0028267	1146	40	0.93142134	0.023850322	0.9299019	377.28503		9.660919	-0.011839	-0.0010577	0.0001578	NaN	15.463	71	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5280.7	+		13098	11351	7526	7690							0.07366309450708286
LAPAAYCS	8	Unmodified	_LAPAAYCS_					0	0	0		ENST00000392335.6_2_19:19168747-19168879:+|nuORF	ENST00000392335.6_2_19:19168747-19168879:+|nuORF	ENST00000392335.6_2_19:19168747-19168879:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.18891412064994	2	398.188914	794.363275	1.0238	0.00040765	-3.333	-0.0013272	-2.3092	-0.00091952	398.18770981808865	30.873	0.33783	30.873	30.825	31.163	0	1437	76	0.7524962	0.046359897	0.7524962	306.628	0	18.890778						408	15	2	NaN	NaN	NaN	0.8439	1	4677	4677		3.1533	1.7138	1	250100			13099	6754	7527	7691	10408	10408					-0.042131798541845455
LAPAGTKQ	8	Unmodified	_LAPAGTKQ_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4515792877	1	785.451579	784.444303	1.2172	0.00095603	-2.9529	-0.0023194	-1.7358	-0.0013634	785.4487513763738	37.142	0.12047	37.145	37.072	37.193	0.0022507	549	49	1.292695	0.028738618	1.2911756	263.43665	0	5.856598						139	6	3	NaN	NaN	NaN	0.84651	1	4471	4471		1.6704	0	1	15664			13100	3635	7528	7692	10409	10409					0.04345844180227232
LAPCAEPP	8	Unmodified	_LAPCAEPP_					0	0	0		ENST00000397497.8_2_8:27288866-27309154:+|nuORF	ENST00000397497.8_2_8:27288866-27309154:+|nuORF	ENST00000397497.8_2_8:27288866-27309154:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.3862018389	1	797.386202	796.378925	0.92389	0.0007367	-1.3584	-0.0010832	-0.43451	-0.00034647	797.3857970618334	32.055	0.16894	32.051	31.93	32.099	-0.0037613	537	64	1.2998781	0.037705302	1.2983587	264.8322	0	7.681946						241	8	3	NaN	NaN	NaN	0.8439	1	4621	4621		3.1533	0	1	28136			13101	6807	7529	7693	10410	10410					-0.027408933371248168
LAPCGLLL	8	Unmodified	_LAPCGLLL_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.4746229157	1	799.474623	798.467346	0.27592	0.00022059	-8.4734	-0.0067743	-8.1975	-0.0065537	799.4673438911725	55.843	0.023964	55.842	55.842	55.866	-0.00059128	516	40	1.3124412	0.02332151	1.3109218	267.37994	0	4.7512207						44	2	2	NaN	NaN	NaN	0.84651	1	4646	4646		1.6704	0	1	4480.4			13102	6116	7530	7694	10411	10411					0.0600514697333665
LAPEEGSAVE	10	Unmodified	_LAPEEGSAVE_					0	0	0			REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4785818992001	1	1001.47858	1000.47131	2.0903	0.0020934	-0.23237	-0.00023271	1.8579	0.0018607	1001.4801688849726	20.164	0.096367	20.15	20.126	20.222	-0.014143	264	40	1.4624695	0.023111463	1.46095	296.92575	0	4.692322						75	5	2	NaN	NaN	NaN	0.5917	1	8432	8432		15.463	0	1	4978.8	+		13103	9480	7531	7695	10412	10412					-0.028911367898899698
LAPEEGSAVE	10	Unmodified						0	0	0			REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1001.47858	1000.47131	1.8682	0.0018709	-0.64218	-0.00064313	1.226	0.0012278	1001.4767245222571	20.165	0.09613	20.165	20.141	20.237	0	267	43	1.4606913	0.024890542	1.4606913	296.56473		5.0535583	0.0072273	-0.0001588	-0.00012937	NaN	15.463	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5227.1	+		13104	9480	7531	7695							-0.028911367898899698
LAPEEGSAVE	10	Unmodified						0	0	0			REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1001.47858	1000.47131	2.0903	0.0020934	-0.23237	-0.00023271	1.8579	0.0018607	1001.4801688849726	20.164	0.096367	20.15	20.126	20.222	-0.014143	264	40	1.4624695	0.023111463	1.46095	296.92575		4.692322	-0.0072273	0.00025162	0.00012937	NaN	15.463	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4978.8	+		13105	9480	7531	7695							-0.028911367898899698
LAPGHGGA	8	Unmodified	_LAPGHGGA_					0	0	0			REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3521995941001	1	679.3522	678.344923	-0.38834	-0.00026382	0.61068	0.00041487	0.22234	0.00015105	679.3535370120952	53.24	0.1439	53.24	53.192	53.336	-0.00053787	645	172	1.2351195	0.102781534	1.2336	252.37935	0	21.001984						498	7	4	NaN	NaN	NaN	0.84651	1	2719	2719		1.6704	0	1	75930	+		13106	11722	7532	7696	10413	10413					-0.007115537138588479
LAPGHGGA	8	Unmodified						0	0	0			REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	679.3522	678.344923	1.7817	0.0012104	-1.1594	-0.00078761	0.62234	0.00042279	679.3517397661084	53.242	0.096043	53.242	53.17	53.266	0	651	193	1.2315145	0.115434766	1.2315145	251.64273		23.587479	0.0010416	-0.0005809	-0.0010428	NaN	1.6704	417	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80735	+		13107	11722	7532	7696							-0.007115537138588479
LAPGHGGA	8	Unmodified						0	0	0			REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	REV__ENST00000321685.7_1_11:64000286-64001386:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.3522	678.344923	-0.38834	-0.00026382	0.61068	0.00041487	0.22234	0.00015105	679.3535370120952	53.24	0.1439	53.24	53.192	53.336	-0.00053787	645	172	1.2351195	0.102781534	1.2336	252.37935		21.001984	-0.0010416	0.00062158	0.0010428	NaN	1.6704	498	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75930	+		13108	11722	7532	7696							-0.007115537138588479
LAPLYHYLF	9	Unmodified	_LAPLYHYLF_					0	0	0			REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF	REV__ENST00000494883.1_1_9:134396759-134397813:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.81058502785	2	568.810585	1135.60662	1.5048	0.00085594	-3.1127	-0.0017705	-1.6079	-0.0009146	568.8083977407315	37.961	0.12019	37.964	37.916	38.036	0.0034256	1221	55	0.885486	0.0331074	0.88396657	358.97522	0	13.421722						83	6	2	NaN	NaN	NaN	0.65388	1	13839	13839		3.1533	0.26387	1	6356	+		13109	9492	7533	7697	10414	10414					0.04423807862372087
LAPPGEASL	9	Unmodified	_LAPPGEASL_					0	0	0		ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENST00000479237.5_1_9:131770965-131773053:-|nuORF	ENST00000479237.5_1_9:131770965-131773053:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.461809623	1	854.46181	853.454533	1.9161	0.0016372	0.39867	0.00034065	2.3147	0.0019779	854.4624143773741	22.573	0.14471	22.573	22.501	22.645	0	486	40	1.3303722	0.023299098	1.3303722	270.73752	0	4.7414856						105	7	2	NaN	NaN	NaN	0.23112	1	5440	5440		23.334	1.4994	1	7843.7			13110	3629	7534	7698	10415	10415					0.021944071148027433
LAPPLKTTK	9	Unmodified	_LAPPLKTTK_					0	0	0		ENST00000359152.9_1_11:85406084-85406225:-|nuORF	ENST00000359152.9_1_11:85406084-85406225:-|nuORF	ENST00000359152.9_1_11:85406084-85406225:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.6138935890999	1	968.613894	967.606617	0.1012	9.8024E-05	1.7049	0.0016514	1.8061	0.0017494	968.616607693675	56.779	0.048115	56.778	56.754	56.802	-0.00056458	90	34	1.5652816	0.019439936	1.5637622	317.94638	0	3.9487305						52	3	2	NaN	NaN	NaN	0.67989	1	7405	7405		0.92586	0	1	3628.3			13111	6590	7535	7699	10416	10416					0.12151807862358055
LAPVHHPC	8	Unmodified	_LAPVHHPC_					0	0	0			REV__ENST00000258821.7_1_14:20757539-20757656:-|nuORF	REV__ENST00000258821.7_1_14:20757539-20757656:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.22362260525	2	437.223623	872.432692	1.106	0.00048355	6.3062	0.0027572	7.4121	0.0032408	437.22711610418037	20.333	0.096319	20.319	20.295	20.391	-0.014141	1416	91	0.76547134	0.055544436	0.7639519	311.44156	0	22.598969						142	5	3	NaN	NaN	NaN	0.77734	1	5560	5560		12.26	2.2081	1	18570	+		13112	11535	7536	7700	10417	10417					-0.00862676114752503
LAQAMETAL	9	Unmodified	_LAQAMETAL_					0	0	0		nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000181191|Q8NG27-2|PJA1	nc|ENSG00000181191|Q8NG27-2|PJA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.486644165	1	947.486644	946.479368	1.3937	0.0013205	-0.80512	-0.00076284	0.5886	0.00055769	947.485663642016	22.597	0.096472	22.583	22.535	22.631	-0.01354	282	49	1.4517976	0.028467417	1.4502782	294.98746	0	5.7842407						112	5	3	NaN	NaN	NaN	0.084037	1	6863	6863		38.131	10.835	1	12435			13113	5216	7537	7701	10418	10418					0.003987189258737089
LAQLIELW	8	Unmodified	_LAQLIELW_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.289485445	2	493.289485	984.564418	0.60368	0.00029779	-1.1243	-0.00055462	-0.52065	-0.00025683	493.28836381046875	27.663	0.19301	27.653	27.581	27.774	-0.009552	1314	34	0.8283535	0.020307899	0.8268341	336.43097	0	8.247955						184	9	3	NaN	NaN	NaN	0.7718	1	7873	7873		13.003	0	1	24486	+		13114	9804	7538	7702	10419	10419					0.07151832453996576
LARHQQIHT	9	Unmodified	_LARHQQIHT_					0	0	0		nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.30706380895	2	552.307064	1102.59957	1.0557	0.00058307	2.4973	0.0013793	3.553	0.0019623	552.3084980227588	36.374	0.096428	36.374	36.326	36.422	0	1200	64	0.89836043	0.03861904	0.89836043	364.3252	0	15.661743						139	5	3	NaN	NaN	NaN	0.67082	1	12961	12961		1.7022	0.19679	1	11469			13115	7999	7539	7703	10420	10420					0.052378880345031575
LARHQQIHT	9	Unmodified						0	0	0		nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.307064	1102.59957	1.582	0.00087377	5.0164	0.0027706	6.5984	0.0036444	552.3095804305493	36.372	0.12038	36.374	36.326	36.446	0.0016747	1197	52	0.9001988	0.031259656	0.8986794	365.07074		12.677185	-5.5241E-05	0.0017014	0.00015948	NaN	1.7022	146	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10442			13116	7999	7539	7703							0.052378880345031575
LARSEDLVF	9	Unmodified	_LARSEDLVF_					0	0	0		nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5625863001	1	1049.56259	1048.55531	1.5304	0.0016063	3.7629	0.0039494	5.2934	0.0055557	1050.5665446458254	34.951	0.072269	34.951	34.951	35.023	0	156	55	1.5263584	0.031873345	1.5263584	309.7039	0	6.467224						87	4	2	NaN	NaN	NaN	0.54912	1	10579	10579		7.5876	0.72439	1	5681			13117	4537	7540	7704	10421	10421					0.03297439097673305
LARVLGGI	8	Unmodified	_LARVLGGI_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.5195992734003	1	798.519599	797.512323	1.9639	0.0015682	-0.047933	-3.8276E-05	1.9159	0.0015299	798.5188170031379	56.205	0.047939	56.205	56.181	56.229	0	453	55	1.3500742	0.032224298	1.3500742	275.05234	0	6.5650635						65	3	2	NaN	NaN	NaN	0.84945	1	4727	4727		0	0	1	7884.7	+		13118	11178	7541	7705	10422	10422					0.10546713830922272
LASADYFVL	9	Unmodified	_LASADYFVL_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5193245019001	1	998.519325	997.512048	1.4217	0.0014196	2.2301	0.0022268	3.6517	0.0036463	998.5216059974985	30.922	0.1689	30.922	30.873	31.042	0	210	94	1.4944444	0.055012465	1.4944444	303.42984	0	11.169678						268	8	2	NaN	NaN	NaN	0.20577	1	8480	8480		24.961	4.4056	1	73446			13119	2093	7542	7706	10423	10423					0.013192493203860067
LASDLPAII	9	Unmodified	_LASDLPAII_					0	0	0		ENST00000225972.7_1_17:48460219-48460333:-|nuORF	ENST00000225972.7_1_17:48460219-48460333:-|nuORF	ENST00000225972.7_1_17:48460219-48460333:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5400599440001	1	912.54006	911.532783	1.0826	0.00098789	-0.32889	-0.00030013	0.75368	0.00068777	912.5403431486815	31.187	0.096525	31.187	31.163	31.259	0	291	100	1.446459	0.0587548	1.446459	294.0643	0	11.944824						254	5	3	NaN	NaN	NaN	0.29681	1	6263	6263		19.118	0	1	42227			13120	6241	7543	7707	10424	10424					0.07347839700048553
LASEIYDIL	9	Unmodified	_LASEIYDIL_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;ENST00000506991.1_1_4:139402872-139402968:-|nuORF	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5561039386998	1	1036.5561	1035.54883	1.2074	0.0012516	-0.53575	-0.00055534	0.67166	0.00069622	1036.5555163080837	31.452	0.26552	31.452	31.404	31.67	0	192	148	1.5050892	0.086909175	1.5050892	305.4381	0	17.637085						680	12	4	NaN	NaN	NaN	0.0047854	1	10019	10019		103.03	18.147	1	228800			13121	1477	7544	7708	10425	10425					0.03247501146279319
LASGGVVIVL	10	Unmodified	_LASGGVVIVL_					0	0	0			REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.2973104771	2	464.29731	926.580068	0.72517	0.00033669	-0.94557	-0.00043903	-0.2204	-0.00010233	464.29627368727967	24.912	0.072393	24.9	24.875	24.948	-0.012392	1332	40	0.8172735	0.024015844	0.81575406	332.2169	0	9.762329						97	4	3	NaN	NaN	NaN	0.10964	1	6402	6402		44.638	8.4036	1	11879	+		13122	13540	7545	7709	10426	10426					0.1138411897103424
LASGGVVIVL	10	Unmodified						0	0	0			REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	464.29731	926.580068	0.72517	0.00033669	-0.94557	-0.00043903	-0.2204	-0.00010233	464.29627368727967	24.912	0.072393	24.9	24.875	24.948	-0.012392	1332	40	0.8172735	0.024015844	0.81575406	332.2169		9.762329	0.0057725	0.0010138	0.00016397	NaN	44.638	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11879	+		13123	13540	7545	7709							0.1138411897103424
LASGPDPAF	9	Unmodified	_LASGPDPAF_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4305094946001	1	874.430509	873.423233	1.799	0.0015731	0.52498	0.00045905	2.324	0.0020321	874.4308231363839	21.826	0.14458	21.826	21.802	21.946	0	438	91	1.359022	0.053684115	1.359022	276.46765	0	10.9210205						313	7	4	NaN	NaN	NaN	0.023828	1	5714	5714		67.154	32.715	1	53656			13124	3257	7546	7710	10427	10427					-0.018541659192806037
LASGPDPAF	9	Unmodified	_LASGPDPAF_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4305094946001	1	874.430509	873.423233	1.1042	0.00096559	0.78242	0.00068417	1.8867	0.0016498	874.4306464334923	21.826	0.21672	21.812	21.788	22.004	-0.013895	435	88	1.360811	0.051897407	1.3592916	276.83157	0	10.557556						335	10	4	NaN	NaN	NaN	0.032764	1	5576	5576		55.494	13.709	1	53176			13125	3257	7546	7710	10428	10428					-0.018541659192806037
LASLESVSL	9	Unmodified	_LASLESVSL_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.514239124	1	918.514239	917.506963	1.4241	0.0013081	1.3315	0.001223	2.7556	0.0025311	918.5148129094196	26.843	0.04829	26.843	26.819	26.867	0	321	43	1.4286518	0.024940848	1.4286518	290.41595	0	5.0699463						62	3	2	NaN	NaN	NaN	0.56671	1	6375	6375		6.8632	0.77288	1	5174.9			13126	1782	7547	7711	10429	10429					0.04490945457757789
LASLESVSL	9	Unmodified						0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	918.514239	917.506963	1.5471	0.001421	-0.7512	-0.00068999	0.79586	0.00073101	918.5134603457142	26.866	0.048319	26.856	26.832	26.88	-0.010645	315	46	1.4322147	0.026720881	1.4306953	291.14023		5.4318237	0.0063395	-0.001075	0.0010218	NaN	6.8632	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4967.3			13127	1782	7547	7711							0.04490945457757789
LASSGGGS	8	Unmodified	_LASSGGGS_					0	0	0		ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.2994953216001	1	635.299495	634.292219	-0.0025573	-1.6247E-06	2.2488	0.0014287	2.2463	0.0014271	635.3025446007372	55.602	0.14417	55.602	55.53	55.674	-0.00059128	717	40	1.1918083	0.023491621	1.1902889	243.86348	0	4.8067627						115	7	2	NaN	NaN	NaN	0.84887	1	1494	1494		0.32989	0	1	6795.3			13128	7304	7548	7712	10430	10430					-0.039555565673140336
LASSGGGS	8	Unmodified						0	0	0		ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	635.299495	634.292219	1.8106	0.0011502	-1.5059	-0.00095671	0.30464	0.00019353	635.3009054752355	55.917	0.072067	55.917	55.869	55.941	0	645	55	1.2351195	0.03243816	1.2351195	252.72566		6.637375	0.15766	-0.0012566	0.022415	NaN	0.32989	83	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4989.1			13129	7304	7548	7712							-0.039555565673140336
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.28440006709997	2	473.2844	944.554247	2.1532	0.0010191	-1.577	-0.00074635	0.57621	0.00027271	473.2837946115122	17.957	0.21587	17.957	17.909	18.125	0	1338	91	0.81357855	0.055454254	0.81357855	330.62296	0	22.535553						478	10	4	NaN	NaN	NaN	0.045904	1	6937	6937		48.65	8.4965	1	249160			13130	553	7549	7713	10431	10431					0.07975224728750163
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.5615236676	1	945.561524	944.554247	2.0895	0.0019757	1.2068	0.0011411	3.2963	0.0031168	945.5623668549315	17.957	0.072018	17.957	17.933	18.005	0	225	43	1.4855686	0.024858832	1.4855686	301.85812	0	5.051178						68	4	2	NaN	NaN	NaN	0.12866	1	6938	6938		31.675	8.341	1	5522.5			13131	553	7549	7713	10432	10432					0.07975224728750163
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.28440006709997	2	473.2844	944.554247	1.4784	0.00069969	-0.92218	-0.00043645	0.55619	0.00026324	473.2840929305227	17.978	0.16795	17.964	17.916	18.084	-0.013786	1338	91	0.81357855	0.055454254	0.8120591	330.62296	0	22.535553						462	8	4	NaN	NaN	NaN	0.045904	1	6799	6799		48.65	14.211	1	253880			13132	553	7549	7713	10433	10433					0.07975224728750163
LATKTEVAL	9	Unmodified	_LATKTEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.5615236676	1	945.561524	944.554247	2.2865	0.002162	0.68171	0.0006446	2.9682	0.0028066	945.5626518480157	17.978	0.071995	17.964	17.94	18.012	-0.013786	222	40	1.4873441	0.023081899	1.4858247	302.2189	0	4.6901245						72	4	2	NaN	NaN	NaN	0.15381	1	6800	6800		28.296	6.4606	1	7007.8			13133	553	7549	7713	10434	10434					0.07975224728750163
LATTFDPYL	9	Unmodified	_LATTFDPYL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5298891881998	1	1040.52989	1039.52261	1.4549	0.0015139	-0.20517	-0.00021348	1.2498	0.0013004	1040.5290464380757	28.918	0.072393	28.918	28.918	28.991	0	138	64	1.5369828	0.037163854	1.5369828	311.8948	0	7.5415344						88	4	2	NaN	NaN	NaN	0.29681	1	10191	10191		19.118	7.5699	1	6255.9			13134	4290	7550	7714	10435	10435					0.00443231974804803
LATTFDPYL	9	Unmodified	_LATTFDPYL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5298891881998	1	1040.52989	1039.52261	1.4388	0.0014971	2.5383	0.0026412	3.9771	0.0041382	1040.5320552909088	28.846	0.072409	28.846	28.822	28.894	0	120	55	1.5476005	0.031849623	1.5476005	314.0494	0	6.4631653						102	4	2	NaN	NaN	NaN	0.29681	1	10193	10193		19.118	7.5699	1	10700			13135	4290	7550	7714	10436	10436					0.00443231974804803
LATTFDPYL	9	Unmodified	_LATTFDPYL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5298891881998	1	1040.52989	1039.52261	1.2224	0.001272	-0.40404	-0.00042042	0.81839	0.00085156	1040.5303263889577	28.845	0.04825	28.837	28.813	28.861	-0.0083504	117	61	1.5493695	0.035392284	1.54785	314.4084	0	7.1820374						82	3	2	NaN	NaN	NaN	0.062072	1	9978	9978		41.785	16.823	1	9238.9			13136	4290	7550	7714	10437	10437					0.00443231974804803
LATTFDPYL	9	Unmodified	_LATTFDPYL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5298891881998	1	1040.52989	1039.52261	1.3704	0.0014259	0.34371	0.00035764	1.7141	0.0017836	1040.5307657484389	28.918	0.12066	28.909	28.909	29.03	-0.0083504	138	61	1.5369828	0.0353961	1.5354633	311.8948	0	7.1828003						88	6	2	NaN	NaN	NaN	0.094712	1	9979	9979		36.586	11.625	1	6338.8			13137	4290	7550	7714	10438	10438					0.00443231974804803
LAVCAEAP	8	Unmodified	_LAVCAEAP_					0	0	0		ENST00000436334.1_1_1:229405320-229406758:-|nuORF	ENST00000436334.1_1_1:229405320-229406758:-|nuORF	ENST00000436334.1_1_1:229405320-229406758:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3862018389	1	773.386202	772.378925	1.9486	0.0015071	-9.5495	-0.0073854	-7.6008	-0.0058784	773.378434347072	55.028	0.12019	55.028	55.004	55.124	0	399	187	1.382264	0.11086464	1.382264	281.7655	0	22.59906						312	6	2	NaN	NaN	NaN	0.84455	1	4387	4387		2.7852	0.32367	1	72644			13138	6993	7551	7715	10439	10439					-0.016368933371268213
LAVCAEAP	8	Unmodified						0	0	0		ENST00000436334.1_1_1:229405320-229406758:-|nuORF	ENST00000436334.1_1_1:229405320-229406758:-|nuORF	ENST00000436334.1_1_1:229405320-229406758:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	773.386202	772.378925	-0.15634	-0.00012091	-8.6025	-0.0066531	-8.7588	-0.006774	773.3794548356913	55.026	0.096012	55.025	55.025	55.121	-0.0006218	396	148	1.3840506	0.087586045	1.3825312	282.12967		17.853851	-0.0012148	0.00032107	0.00013354	NaN	2.7852	267	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56585			13139	6993	7551	7715							-0.016368933371268213
LAVGSNDY	8	Unmodified	_LAVGSNDY_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	838.3941239883	1	838.394124	837.386848	0.7002	0.00058704	4.0998	0.0034372	4.8	0.0040243	838.3994080650378	41.063	0.21658	41.07	40.998	41.215	0.0074959	456	61	1.348284	0.03580463	1.3467646	274.46613	0	7.2886353						406	10	4	NaN	NaN	NaN	0.84207	1	5105	5105		3.5732	0.41988	1	44953			13140	3334	7552	7716	10440	10440					-0.038350428160015326
LAVKEPIIEKL	11	Unmodified	_LAVKEPIIEKL_					0	0	0			REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1252.7875008583	1	1252.7875	1251.78022	1.6712	0.0020937	6.3077	0.0079022	7.979	0.009996	1252.7959213438246	39.572	0.12015	39.577	39.457	39.577	0.0053368	102	31	1.5582114	0.017679214	1.556692	315.4996	0	3.5796204						79	6	2	NaN	NaN	NaN	0.77466	1	17063	17063		1.1768	0.48567	1	7764.9	+		13141	13482	7553	7717	10441	10441					0.16440548848004255
LAVKEPIIEKL	11	Unmodified						0	0	0			REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1252.7875	1251.78022	2.016	0.0025256	3.1681	0.0039689	5.1841	0.0064945	1252.7911645896215	39.646	0.024036	39.646	39.646	39.67	0	105	25	1.5564433	0.014144897	1.5564433	315.14163		2.8639832	0.034488	-0.0030136	-0.00012429	NaN	1.1768	30	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2333.5	+		13142	13482	7553	7717							0.16440548848004255
LAVKEPIIEKL	11	Unmodified						0	0	0			REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	REV__tr|U7SST1|U7SST1_FUSNUUvrABCsystemproteinCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrCPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1252.7875	1251.78022	1.6712	0.0020937	6.3077	0.0079022	7.979	0.009996	1252.7959213438246	39.572	0.12015	39.577	39.457	39.577	0.0053368	102	31	1.5582114	0.017679214	1.556692	315.4996		3.5796204	-0.034488	0.00091971	0.00012429	NaN	1.1768	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7764.9	+		13143	13482	7553	7717							0.16440548848004255
LAVLDWEL	8	Unmodified	_LAVLDWEL_					0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5244098798001	1	958.52441	957.517133	1.2465	0.0011948	0.15366	0.00014729	1.4002	0.0013421	958.5238070415982	34.276	0.19288	34.276	34.228	34.421	0	288	70	1.4482387	0.040932894	1.4482387	294.2157	0	8.315674						296	9	4	NaN	NaN	NaN	0.16485	1	7279	7279		52.758	0	1	43614			13144	2	7554	7718	10442	10442					0.03667553183004202
LAVLDWEL	8	Unmodified	_LAVLDWEL_					0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.5244098798001	1	958.52441	957.517133	1.3293	0.0012741	-0.52242	-0.00050076	0.80684	0.00077338	958.5239573445965	34.251	0.14459	34.249	34.225	34.37	-0.0012474	288	64	1.4482387	0.03736949	1.4467193	294.2157	0	7.5917664						261	7	3	NaN	NaN	NaN	0.057516	1	7143	7143		76.264	0	1	40949			13145	2	7554	7718	10443	10443					0.03667553183004202
LAVNGSNP	8	Unmodified	_LAVNGSNP_					0	0	0		nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3995437172	1	771.399544	770.392267	1.6282	0.001256	5.3033	0.004091	6.9316	0.005347	771.403556850943	29.184	0.33784	29.184	29.015	29.353	0	570	103	1.2801172	0.06108904	1.2801172	260.9552	0	12.453186						410	15	2	NaN	NaN	NaN	0.75561	1	4361	4361		15.175	2.5875	1	61241			13146	394	7555	7719	10444	10444					-0.00211319233528684
LAVSENHIL	9	Unmodified	_LAVSENHIL_					0	0	0		CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant;nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	CTNNA1|p.D522H|1|0.22|ENSG00000044115|chr5:138924527-138924527|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.2796490402	2	498.279649	994.544745	0.9653	0.00048099	-2.6449	-0.0013179	-1.6796	-0.00083691	498.2788673560714	20.501	0.072107	20.487	20.463	20.535	-0.014143	1317	55	0.8265074	0.033225775	0.82498795	335.63477	0	13.492584						88	4	2	NaN	NaN	NaN	0.42817	1	8211	8211		12.57	0.31001	1	21786			13147	235	7556	7720	10445	10445					0.04725456443236453
LAVTTSGS	8	Unmodified	_LAVTTSGS_					0	0	0		CON__P00735	CON__P00735	CON__P00735	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3883103289002	1	735.38831	734.381034	1.8071	0.0013289	7.0314	0.0051708	8.8385	0.0064997	735.3928177052892	22.814	0.072338	22.814	22.79	22.863	0	579	55	1.2747238	0.032372475	1.2747238	260.0786	0	6.6048584						65	4	2	NaN	NaN	NaN	0.84727	1	3821	3821		1.2418	0	1	4112.2		+	13148	183	7557	7721	10446	10446					0.003218586723505723
LAWAVWLACV	10	Unmodified	_LAWAVWLACV_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.30461258045	2	566.304613	1130.59467	1.6851	0.00095427	-8.2616	-0.0046786	-6.5765	-0.0037243	566.299546892461	21.537	0.072342	21.523	21.475	21.547	-0.014004	1215	37	0.8891654	0.022073984	0.88764596	360.48602	0	8.949249						59	4	2	NaN	NaN	NaN	0.6337	1	13654	13654		12.588	2.8419	1	6419.3			13149	4990	7558	7722	10447	10447					0.034598678475276756
LAWAVWLACV	10	Unmodified						0	0	0		ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.304613	1130.59467	1.8119	0.0010261	-12.655	-0.0071664	-10.843	-0.0061403	566.2973137684842	21.513	0.12049	21.513	21.488	21.609	0	1215	31	0.8891654	0.018395007	0.8891654	360.48605		7.4577026	-0.0050643	-0.0025855	0.00075972	NaN	12.588	67	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6639.1			13150	4990	7558	7722							0.034598678475276756
LAYAENIAL	9	Unmodified	_LAYAENIAL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.5302235391999	1	977.530224	976.522947	2.226	0.0021759	-2.0984	-0.0020512	0.12757	0.00012471	977.5282467905239	26.384	0.072428	26.384	26.384	26.456	0	210	40	1.4944444	0.02306974	1.4944444	303.51874	0	4.685425						53	4	2	NaN	NaN	NaN	0.49672	1	7795	7795		9.746	1.5012	1	3993.2			13151	5625	7559	7723	10448	10448					0.033746516946507654
LAYAENIAL	9	Unmodified						0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	977.530224	976.522947	2.31	0.0022581	-0.4122	-0.00040294	1.8978	0.0018552	977.5313047411914	26.408	0.048273	26.397	26.373	26.421	-0.011137	207	43	1.496219	0.024840355	1.4946996	303.87915		5.0450134	0.0063683	0.00086845	0.00012758	NaN	9.746	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4412.5			13152	5625	7559	7723							0.033746516946507654
LAYDGFIKN	9	Unmodified	_LAYDGFIKN_					0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5411225765	1	1040.54112	1039.53385	0.84207	0.00087621	-5.9487	-0.0061899	-5.1066	-0.0053137	1040.5367676619599	31.573	0.048294	31.573	31.549	31.597	0	162	79	1.5228153	0.046058893	1.5228153	309.01984	0	9.346558						84	3	2	NaN	NaN	NaN	0.33629	1	10195	10195		16.584	0	1	9533			13153	13875	7560	7724	10449	10449					0.01566054068939593
LAYDGFIKN	9	Unmodified						0	0	0		tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1040.54112	1039.53385	3.7255	0.0038765	-4.5408	-0.0047249	-0.81533	-0.00084838	1040.5374385769835	31.693	0.02412	31.688	31.664	31.688	-0.0044174	144	10	1.533442	0.00531137	1.5319226	311.17627		1.0778198	0.057592	0.00047682	0.0045536	NaN	16.584	10	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569.75			13154	13875	7560	7724							0.01566054068939593
LCAQALAGRA	10	Unmodified	_LCAQALAGRA_					0	0	0			REV__ENST00000275732.5_1_7:100286697-100286841:-|nuORF	REV__ENST00000275732.5_1_7:100286697-100286841:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.2660187362	2	487.266019	972.517485	2.126	0.0010359	7.0823	0.003451	9.2083	0.0044869	487.27008542587834	13.469	0.09604	13.469	13.421	13.517	0	1341	34	0.8117308	0.020327687	0.8117308	329.73596	0	8.257385						67	5	2	NaN	NaN	NaN	0.72631	1	7682	7682		6.2502	0.15988	1	4590	+		13155	11596	7561	7725	10450	10450					0.03012649631205022
LCDLEPWA	8	Unmodified	_LCDLEPWA_					0	0	0			REV__ENST00000544547.5_1_2:109302217-109302484:+|nuORF	REV__ENST00000544547.5_1_2:109302217-109302484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4338803129999	1	946.43388	945.426604	1.3663	0.0012931	-0.097938	-9.2692E-05	1.2683	0.0012004	946.4340641601602	28.701	0.26546	28.692	28.644	28.909	-0.0083504	315	148	1.4322147	0.08720493	1.4306953	291.01312	0	17.719269						658	12	3	NaN	NaN	NaN	0.59262	1	6810	6810		25.752	0.79079	1	93756	+		13156	12710	7562	7726	10451	10451					-0.048292391369500365
LCEEALRHYE	10	Unmodified	_LCEEALRHYE_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.5326503432999	3	421.53265	1261.57612	1.2471	0.0005257	-6.4842	-0.0027333	-5.2371	-0.0022076	421.8646901731115	22.548	0.14472	22.535	22.511	22.655	-0.01354	1518	34	0.7023569	0.020458162	0.70083743	426.58664	0	12.425598						87	7	2	NaN	NaN	NaN	0.65442	1	17246	17246		6.1406	0	1	6714.3			13157	1304	7563	7727	10452	10452					-0.04420338585009631
LCEEPEPV	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))LC(Carbamidomethyl (C))EEPEPV_	LC(1)EEPEPV		LC(50)EEPEPV		1	1	0			REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4448389298001	1	1014.44484	1013.43756	1.4712	0.0014924	-3.3452	-0.0033935	-1.874	-0.0019011	1014.4419187713498	28.725	0.14479	28.716	28.668	28.813	-0.0083504	273	79	1.4571344	0.04624486	1.4556149	295.7911	0	9.387512						273	7	3	NaN	NaN	NaN	0.19946	1	8927	8927		50.033	13.996	1	32193	+		13158	12025	7564	7728	10453	10453	8				-0.06861881553300009
LCEEPEPV	8	Acetyl (Protein N-term),Carbamidomethyl (C)						1	1	0			REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1014.44484	1013.43756	1.9405	0.0019685	-3.4903	-0.0035408	-1.5499	-0.0015723	1014.4406028664057	28.725	0.1448	28.725	28.677	28.822	0	276	70	1.4553556	0.04091549	1.4553556	295.43002		8.305664	0.0045524	-8.5992E-05	-0.00012965	NaN	50.033	198	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18505	+		13159	12025	7564	7728			8				-0.06861881553300009
LCEEPEPV	8	Acetyl (Protein N-term),Carbamidomethyl (C)						1	1	0			REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	REV__ENST00000399061.3_1_18:32920685-32924393:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.44484	1013.43756	1.4712	0.0014924	-3.3452	-0.0033935	-1.874	-0.0019011	1014.4419187713498	28.725	0.14479	28.716	28.668	28.813	-0.0083504	273	79	1.4571344	0.04624486	1.4556149	295.7911		9.387512	-0.0045524	6.1264E-05	0.00012965	NaN	50.033	273	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32193	+		13160	12025	7564	7728			8				-0.06861881553300009
LCFLERYL	8	Unmodified	_LCFLERYL_					0	0	0		ENST00000242719.3_1_1:51738017-51738095:+|nuORF	ENST00000242719.3_1_1:51738017-51738095:+|nuORF	ENST00000242719.3_1_1:51738017-51738095:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7809703086501	2	528.78097	1055.54739	1.0557	0.00055822	4.3026	0.0022751	5.3582	0.0028333	528.7833555380902	34.107	0.096573	34.107	34.059	34.155	0	1257	40	0.86339295	0.023950994	0.86339295	350.3369	0	9.718536						118	5	3	NaN	NaN	NaN	0.80071	1	10899	10899		9.1232	0.16122	1	11443			13161	6262	7565	7729	10454	10454					0.021835885765540297
LCFQMVCVE	9	Unmodified	_LCFQMVCVE_					0	0	0		ENST00000599145.1_1_19:58928156-58928222:+|nuORF	ENST00000599145.1_1_19:58928156-58928222:+|nuORF	ENST00000599145.1_1_19:58928156-58928222:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2372237589501	2	536.237224	1070.45989	1.5882	0.00085167	2.4442	0.0013107	4.0325	0.0021624	536.7393202684951	29.353	0.12065	29.353	29.305	29.425	0	1278	67	0.85049206	0.040569723	0.85049206	345.04025	0	16.458923						159	6	3	NaN	NaN	NaN	0.47587	1	11566	11566		10.605	0.24481	1	23069			13162	7764	7566	7730	10455	10455					-0.07251696680873465
LCFQMVCVE	9	Unmodified						0	0	0		ENST00000599145.1_1_19:58928156-58928222:+|nuORF	ENST00000599145.1_1_19:58928156-58928222:+|nuORF	ENST00000599145.1_1_19:58928156-58928222:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.237224	1070.45989	0.82999	0.00044507	-1.9041	-0.001021	-1.0741	-0.00057597	536.7364360476305	29.352	0.096516	29.344	29.32	29.417	-0.0077209	1272	70	0.854179	0.042406917	0.8526596	346.53607		17.204254	-0.0042382	-0.0021889	0.0010838	NaN	10.605	172	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21290			13163	7764	7566	7730							-0.07251696680873465
LCFSVLLV	8	Unmodified	_LCFSVLLV_					0	0	0			REV__ENST00000486056.1_1_9:35733177-35736720:+|nuORF	REV__ENST00000486056.1_1_9:35733177-35736720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.2618820985001	2	447.261882	892.509211	1.1575	0.00051769	-5.867	-0.0026241	-4.7096	-0.0021064	447.25921875795206	25.129	0.096497	25.129	25.081	25.178	0	1323	34	0.8228144	0.02031231	0.8228144	334.65576	0	8.261444						105	5	3	NaN	NaN	NaN	0.84692	1	5959	5959		1.4396	0.19772	1	11322	+		13164	9004	7567	7731	10456	10456					0.05865702661890282
LCGLPHVA	8	Unmodified	_LCGLPHVA_					0	0	0			REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	REV__ENST00000577016.5_3_17:3422132-3432236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.22054860005	2	405.220549	808.426544	1.4834	0.00060112	-7.3178	-0.0029653	-5.8343	-0.0023642	405.21758909074543	22.066	0.072296	22.053	22.029	22.101	-0.013731	1419	31	0.76361835	0.018530905	0.7620989	311.06833	0	7.5487366						54	4	2	NaN	NaN	NaN	0.81214	1	4778	4778		7.5902	0	1	4719.5	+		13165	11972	7568	7732	10457	10457					0.014668056537288976
LCIDRSRQW	9	Unmodified	_LCIDRSRQW_					0	0	0			REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8007570105501	2	588.800757	1175.58696	0.84094	0.00049514	5.0142	0.0029523	5.8551	0.0034475	588.8052286118013	31.451	0.14479	31.447	31.399	31.544	-0.0044155	1137	148	0.9369253	0.0900529	0.93540585	379.6736	0	36.492462						820	7	4	NaN	NaN	NaN	0.23112	1	15098	15098		23.334	3.998	1	149210	+		13166	10636	7569	7733	10458	10458					0.0061910857996281266
LCIDRSRQW	9	Unmodified						0	0	0			REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	588.800757	1175.58696	1.1179	0.00065821	4.9165	0.0028948	6.0344	0.003553	588.8054556622819	31.452	0.21722	31.452	31.428	31.646	0	1140	148	0.93509084	0.09006262	0.93509084	378.93027		36.4964	0.0027411	-5.4535E-05	-0.0001575	NaN	23.334	828	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145490	+		13167	10636	7569	7733							0.0061910857996281266
LCIDRSRQW	9	Unmodified						0	0	0			REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	REV__ENST00000485606.1_1_1:11140819-11141291:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	588.800757	1175.58696	0.84094	0.00049514	5.0142	0.0029523	5.8551	0.0034475	588.8052286118013	31.451	0.14479	31.447	31.399	31.544	-0.0044155	1137	148	0.9369253	0.0900529	0.93540585	379.6736		36.492462	-0.0027411	6.0498E-05	0.0001575	NaN	23.334	820	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149210	+		13168	10636	7569	7733							0.0061910857996281266
LCLFVLLVI	9	Unmodified	_LCLFVLLVI_					0	0	0			REV__nc|ENSG00000130164|P01130-2|LDLR	REV__nc|ENSG00000130164|P01130-2|LDLR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.82993187395	2	516.829932	1031.64531	1.6645	0.00086024	-9.1994	-0.0047545	-7.5349	-0.0038943	516.8250835598318	29.087	0.16891	29.087	29.039	29.208	0	1242	67	0.87260187	0.040495276	0.87260187	354.1793	0	16.436554						239	8	4	NaN	NaN	NaN	0.26823	1	9867	9867		20.952	0.39703	1	32306	+		13169	9476	7570	7734	10459	10459					0.13075397172519843
LCLGNHCSLP	10	Unmodified	_LCLGNHCSLP_					0	0	0		PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant;nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7518869057001	2	528.751887	1055.48922	1.3382	0.00070756	-3.4218	-0.0018093	-2.0836	-0.0011017	528.7501483741795	29.353	0.096521	29.353	29.305	29.401	0	1308	67	0.83204526	0.040578544	0.83204526	337.61734	0	16.465485						96	5	2	NaN	NaN	NaN	0.70677	1	10869	10869		7.5876	1.8934	1	7966.4			13170	2045	7571	7735	10460	10460					-0.03630416340388365
LCLGNHCSLP	10	Unmodified						0	0	0		PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant;nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.751887	1055.48922	0.97026	0.00051303	-3.6482	-0.001929	-2.678	-0.001416	528.7492039949286	29.352	0.096502	29.344	29.344	29.441	-0.0077209	1302	67	0.8357362	0.040582895	0.8342168	339.11502		16.467255	-0.0042382	-0.00014106	0.0010858	NaN	7.5876	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7791.1			13171	2045	7571	7735							-0.03630416340388365
LCLPQGGG	8	Unmodified	_LCLPQGGG_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.3708861257002	1	744.370886	743.36361	1.4757	0.0010985	-0.007091	-5.2783E-06	1.4686	0.0010932	744.3710977251566	34.492	0.14473	34.491	34.467	34.612	-0.0006485	606	67	1.2585332	0.039583087	1.2570138	256.71848	0	8.074249						129	7	2	NaN	NaN	NaN	0.81807	1	3879	3879		6.794	0	1	10179	+		13172	13153	7572	7736	10461	10461					-0.018337601343091592
LCLPVCSAYP	10	Unmodified	_LCLPVCSAYP_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2590134460501	2	533.259013	1064.50347	0.999	0.00053273	7.2252	0.0038529	8.2242	0.0043856	533.2621705878763	21.296	0.12023	21.282	21.258	21.378	-0.014006	1296	61	0.8394264	0.03689754	0.83790696	340.57516	0	14.970215						115	6	2	NaN	NaN	NaN	0.77421	1	11063	11063		1.9246	0.22244	1	9748.7			13173	4501	7573	7737	10462	10462					-0.02619763912093731
LCLSQRISAQQ	11	Unmodified	_LCLSQRISAQQ_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.223928225	3	416.223928	1245.64996	1.4582	0.00060692	-4.7815	-0.0019902	-3.3233	-0.0013833	416.22231380305874	20.429	0.048056	20.429	20.429	20.477	0	1413	28	0.7673241	0.016675055	0.7673241	466.10983	0	10.129272						39	3	2	NaN	NaN	NaN	0.76654	1	17659	17659		0.88464	0	1	3826.1			13174	5595	7574	7738	10463	10463					0.03695629577350701
LCLVMEYAR	9	Unmodified	_LCLVMEYAR_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.5481985642998	1	1097.5482	1096.54092	3.0895	0.0033909	4.0253	0.0044179	7.1148	0.0078088	1097.5525643727285	25.443	0.024113	25.431	25.407	25.431	-0.012011	60	34	1.582944	0.019419432	1.5814246	321.00275	0	3.9380493						37	2	2	NaN	NaN	NaN	0.49672	1	12363	12363		9.746	0.78402	1	2854.2			13175	2666	7575	7739	10464	10464					-0.0034867264650984
LCLVSHRL	8	Unmodified	_LCLVSHRL_					0	0	0		nc|ENSG00000179698|A6NE52-2|WDR97;ENSG00000179698|ENST00000323662|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.77347962755	2	470.77348	939.532406	1.3294	0.00062585	-1.3668	-0.00064344	-0.037364	-1.759E-05	470.7725362894804	56.565	0.16763	56.565	56.565	56.732	0	1338	31	0.81357855	0.018476725	0.81357855	330.64832	0	7.509186						92	8	2	NaN	NaN	NaN	0.84207	1	6820	6820		3.5732	0	1	7226.1			13176	5163	7576	7740	10465	10465					0.06022141499192912
LCMKAWGT	8	Unmodified	_LCMKAWGT_					0	0	0			REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.4321061740001	1	909.432106	908.42483	1.7198	0.0015641	-1.6452	-0.0014962	0.07467	6.7908E-05	909.430625187689	21.2	0.16856	21.186	21.138	21.306	-0.014004	375	46	1.3965509	0.026777864	1.3950315	283.93243	0	5.4441833						147	8	2	NaN	NaN	NaN	0.82332	1	6086	6086		6.0903	0.62448	1	11772	+		13177	11626	7577	7741	10466	10466					-0.03304571426531311
LCMKAWGT	8	Unmodified						0	0	0			REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	909.432106	908.42483	1.8243	0.0016591	-3.619	-0.0032913	-1.7948	-0.0016322	909.430325141671	21.175	0.024065	21.175	21.151	21.175	0	381	40	1.3929803	0.02320993	1.3929803	283.2065		4.718811	-0.0051538	-0.0013657	-0.0010256	NaN	6.0903	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3486	+		13178	11626	7577	7741							-0.03304571426531311
LCMKAWGT	8	Unmodified						0	0	0			REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	REV__ENST00000292385.9_1_5:176894615-176895140:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	909.432106	908.42483	1.7198	0.0015641	-1.6452	-0.0014962	0.07467	6.7908E-05	909.430625187689	21.2	0.16856	21.186	21.138	21.306	-0.014004	375	46	1.3965509	0.026777864	1.3950315	283.93243		5.4441833	0.0051538	0.00042941	0.0010256	NaN	6.0903	147	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11772	+		13179	11626	7577	7741							-0.03304571426531311
LCPFHLSVA	9	Unmodified	_LCPFHLSVA_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5127993360001	1	986.512799	985.505523	1.3324	0.0013144	8.2815	0.0081698	9.6139	0.0094842	986.5203188832309	30.028	0.1448	30.021	29.997	30.142	-0.0064106	243	85	1.4749115	0.04974401	1.473392	299.5136	0	10.101624						200	7	3	NaN	NaN	NaN	0.47587	1	7895	7895		10.605	0.85897	1	17880			13180	3554	7578	7742	10467	10467					0.012190328880137713
LCPFHLSVA	9	Unmodified						0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	986.512799	985.505523	2.2458	0.0022155	8.3322	0.0082198	10.578	0.010435	986.5203020132989	30.053	0.16898	30.053	29.98	30.149	0	246	82	1.4731345	0.04798031	1.4731345	299.15277		9.743469	0.015738	2.6784E-05	-0.00012871	NaN	10.605	172	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17597			13181	3554	7578	7742							0.012190328880137713
LCPGGAGG	8	Unmodified	_LCPGGAGG_					0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6;ENST00000586910.1_1_19:10205401-10206762:-|nuORF	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.14704930595	2	316.147049	630.279546	0.83735	0.00026472	0.31879	0.00010079	1.1561	0.00036551	316.1473317535676	35.217	0.19301	35.217	35.192	35.385	0	1545	115	0.68561107	0.07067001	0.68561107	280.60263	0	28.9234						323	9	2	NaN	NaN	NaN	0.84876	1	1456	1456		0.39566	0	1	44711			13182	2673	7579	7743	10468	10468					-0.050382912312102235
LCPGGAGG	8	Unmodified						0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6;ENST00000586910.1_1_19:10205401-10206762:-|nuORF	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	316.147049	630.279546	1.2704	0.00040163	-0.78523	-0.00024825	0.48515	0.00015338	316.14695031307065	35.239	0.16901	35.239	35.167	35.336	-4.1962E-05	1542	106	0.6874725	0.065101385	0.6859531	281.36447		26.644287	0.011344	-0.00031349	0.00017101	NaN	0.39566	375	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51422			13183	2673	7579	7743							-0.050382912312102235
LCPGTLCL	8	Unmodified	_LCPGTLCL_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.4103080993999	1	819.410308	818.403032	1.0201	0.00083589	-9.6261	-0.0078877	-8.6059	-0.0070518	819.4009028736798	32.2	0.12067	32.196	32.172	32.292	-0.0037613	519	43	1.310647	0.025119543	1.3091276	266.90445	0	5.115387						124	6	3	NaN	NaN	NaN	0.82332	1	4890	4890		6.0903	0.62448	1	11045			13184	322	7580	7744	10469	10469					-0.013433761751230122
LCPGWLPR	8	Unmodified	_LCPGWLPR_					0	0	0			REV__ENSG00000262814|ENST00000333676|MRPL12	REV__ENSG00000262814|ENST00000333676|MRPL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.25492273365	2	471.254923	940.495293	1.8241	0.00085961	-3.5696	-0.0016822	-1.7455	-0.0008226	471.25338008359677	18.748	0.047968	18.748	18.748	18.796	0	1341	46	0.8117308	0.027728617	0.8117308	329.8925	0	11.2690735						64	3	2	NaN	NaN	NaN	0.8439	1	6830	6830		3.1533	0.69183	1	4630.5	+		13185	11401	7581	7745	10470	10470					0.022664699534402644
LCRSLLNFL	9	Unmodified	_LCRSLLNFL_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.6077623537	1	1078.60776	1077.60049	1.7122	0.0018468	4.3326	0.0046731	6.0448	0.0065199	1078.6106053519245	36.083	0.19277	36.084	36.036	36.229	0.0011024	81	91	1.5705823	0.053021073	1.5690628	318.56552	0	10.754425						233	9	2	NaN	NaN	NaN	0.31737	1	11568	11568		17.799	0	1	22834	+		13186	9283	7582	7746	10471	10471					0.064789663592137
LCSFCSCIEM	10	Unmodified	_LCSFCSCIEM_					0	0	0			REV__ENST00000320248.3_1_8:1954634-1955009:+|nuORF	REV__ENST00000320248.3_1_8:1954634-1955009:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.1478746395667	3	379.147875	1134.42179	1.944	0.00073705	-4.7547	-0.0018027	-2.8108	-0.0010657	379.4792756498247	24.96	0.12067	24.948	24.875	24.996	-0.012394	1488	40	0.7209441	0.024151623	0.71942466	438.40598	0	14.686615						102	6	3	NaN	NaN	NaN	0.73444	1	13785	13785		2.7042	0	1	4804.1	+		13187	11717	7583	7747	10472	10472					-0.1400395065786597
LCSPGYYG	8	Unmodified	_LCSPGYYG_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.3654663968001	1	859.365466	858.35819	2.3936	0.002057	-5.8424	-0.0050208	-3.4488	-0.0029638	859.3606323636089	25.877	0.096512	25.877	25.853	25.95	0	471	37	1.3393306	0.02149427	1.3393306	272.53592	0	4.37381						70	5	2	NaN	NaN	NaN	0.84727	1	5510	5510		1.2418	0	1	4322.7			13188	1538	7584	7748	10473	10473					-0.07665483716777999
LCSRVQPLP	9	Unmodified	_LCSRVQPLP_					0	0	0			REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7840443138501	2	506.784044	1011.55354	1.7084	0.00086581	4.4778	0.0022693	6.1862	0.0031351	506.7863917592718	17.906	0.095974	17.892	17.868	17.964	-0.013786	1305	61	0.83389086	0.036917448	0.8323714	338.5554	0	14.988312						140	5	3	NaN	NaN	NaN	0.41766	1	8881	8881		13.003	1.8325	1	18195	+		13189	12479	7585	7749	10474	10474					0.04822106808069293
LCSRVQPLP	9	Unmodified						0	0	0			REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.784044	1011.55354	2.1102	0.0010694	2.7625	0.0014	4.8727	0.0024694	506.7850526535548	17.885	0.11992	17.885	17.861	17.981	0	1308	46	0.83204526	0.027686596	0.83204526	337.8061		11.240601	-0.0035307	-0.00094869	-0.00016307	NaN	13.003	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15740	+		13190	12479	7585	7749							0.04822106808069293
LCSRVQPLP	9	Unmodified						0	0	0			REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	REV__ENST00000493339.1_1_6:43112822-43113530:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.784044	1011.55354	1.7084	0.00086581	4.4778	0.0022693	6.1862	0.0031351	506.7863917592718	17.906	0.095974	17.892	17.868	17.964	-0.013786	1305	61	0.83389086	0.036917448	0.8323714	338.5554		14.988312	0.0035307	0.00078987	0.00016307	NaN	13.003	140	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18195	+		13191	12479	7585	7749							0.04822106808069293
LCTLGAAA	8	Unmodified	_LCTLGAAA_					0	0	0			REV__nc|ENSG00000173349|Q587I9|SFT2D3	REV__nc|ENSG00000173349|Q587I9|SFT2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3756371526	1	719.375637	718.368361	2.1553	0.0015504	-3.4521	-0.0024833	-1.2968	-0.0009329	719.3721709415781	24.333	0.07242	24.32	24.296	24.368	-0.012749	627	37	1.24593	0.021611571	1.2444105	254.30771	0	4.411148						43	4	2	NaN	NaN	NaN	0.80071	1	3497	3497		9.1232	0	1	2638.4	+		13192	13172	7586	7750	10475	10475					-0.002088759915523042
LCTLWVSL	8	Unmodified	_LCTLWVSL_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.7569638961	2	467.756964	933.499375	1.0596	0.00049563	-8.798	-0.0041153	-7.7384	-0.0036197	467.7526122711423	19.635	0.096317	19.621	19.549	19.645	-0.014141	1362	37	0.79879075	0.022191346	0.7972713	324.66864	0	9.019653						62	5	2	NaN	NaN	NaN	0.74229	1	6546	6546		16.417	3.8288	1	4292.1	+		13193	8787	7587	7751	10476	10476					0.0299651465649049
LCTYTNDA	8	Unmodified	_LCTYTNDA_					0	0	0			REV__TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	REV__TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.69201791559993	2	450.692018	899.369483	1.7386	0.00078356	-2.0845	-0.00093946	-0.34591	-0.0001559	450.6916911307595	26.022	0.072399	26.022	25.998	26.07	0	1416	46	0.76547134	0.027782738	0.76547134	311.29712	0	11.298523						43	4	2	NaN	NaN	NaN	0.80692	1	6045	6045		8.2903	0	1	2711.8	+		13194	9181	7588	7752	10477	10477					-0.08422706413318792
LCVHHGQI	8	Unmodified	_LCVHHGQI_					0	0	0			REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4614324675002	1	906.461432	905.454156	2.2912	0.0020769	-6.7213	-0.0060926	-4.4301	-0.0040157	906.4542362037571	26.263	0.072416	26.263	26.239	26.312	0	378	52	1.3947657	0.030357838	1.3947657	283.5834	0	6.1723633						88	4	2	NaN	NaN	NaN	0.80071	1	6171	6171		9.1232	0.87838	1	7701.3	+		13195	8534	7589	7753	10478	10478					-0.002352910860167867
LCVHHGQI	8	Unmodified						0	0	0			REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	906.461432	905.454156	2.2912	0.0020769	-6.7213	-0.0060926	-4.4301	-0.0040157	906.4542362037571	26.263	0.072416	26.263	26.239	26.312	0	378	52	1.3947657	0.030357838	1.3947657	283.5834		6.1723633	0.0056729	0.0011327	0.00075972	NaN	9.1232	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7701.3	+		13196	8534	7589	7753							-0.002352910860167867
LCVHHGQI	8	Unmodified						0	0	0			REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	REV__ENST00000589223.5_1_19:2102174-2111012:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	906.461432	905.454156	2.6642	0.002415	-8.9455	-0.0081088	-6.2813	-0.0056938	906.4527185889023	26.263	0.096468	26.252	26.228	26.324	-0.011137	378	40	1.3947657	0.023207426	1.3932463	283.5834		4.7185364	-0.0056729	-0.00088349	-0.00075972	NaN	9.1232	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5122.2	+		13197	8534	7589	7753							-0.002352910860167867
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394003	1	690.360321	689.353045	0.98018	0.00067668	3.7436	0.0025844	4.7237	0.0032611	690.3628408334955	33.528	0.096397	33.528	33.504	33.6	0	750	85	1.1719203	0.05063796	1.1719203	239.38985	0	10.343887						162	5	2	NaN	NaN	NaN	0.84945	1	3013	3013		0	0	1	18137			13198	3257	7590	7754	10479	10479					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394003	1	690.360321	689.353045	1.3883	0.00095842	3.6665	0.0025312	5.0547	0.0034896	690.3628614918032	31.983	0.24132	31.983	31.935	32.177	0	696	136	1.2044523	0.08132577	1.2044523	246.0352	0	16.612549						519	11	2	NaN	NaN	NaN	0.84887	1	3016	3016		0.32989	0	1	54849			13199	3257	7590	7754	10480	10480					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394003	1	690.360321	689.353045	1.4548	0.0010044	3.7061	0.0025586	5.161	0.0035629	690.3631292124088	32.78	0.24131	32.78	32.732	32.973	0	645	169	1.2351195	0.101135135	1.2351195	252.29964	0	20.659027						620	11	3	NaN	NaN	NaN	0.84887	1	3018	3018		0.32989	0	1	62122			13200	3257	7590	7754	10481	10481					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394003	1	690.360321	689.353045	1.2306	0.00084957	4.4883	0.0030986	5.719	0.0039481	690.3635001106479	33.986	0.21724	33.986	33.89	34.107	0	753	82	1.1701111	0.04885292	1.1701111	239.02028	0	9.979263						305	10	2	NaN	NaN	NaN	0.84887	1	3021	3021		0.32989	0	1	76779			13201	3257	7590	7754	10482	10482					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394003	1	690.360321	689.353045	1.1329	0.00078214	5.5211	0.0038116	6.6541	0.0045937	690.3646825409135	33.094	0.096561	33.094	32.997	33.094	0	735	76	1.1809633	0.04521966	1.1809633	241.23705	0	9.237091						142	5	2	NaN	NaN	NaN	0.84692	1	3025	3025		1.4396	0	1	12201			13202	3257	7590	7754	10483	10483					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394003	1	690.360321	689.353045	0.79936	0.00055185	2.8717	0.0019825	3.6711	0.0025344	690.36250741888	41.785	0.21647	41.794	41.698	41.914	0.0089989	693	52	1.2062578	0.030690193	1.2047384	246.40402	0	6.2691345						134	10	2	NaN	NaN	NaN	0.84887	1	2932	2932		0.32989	0	1	9932.7			13203	3257	7590	7754	10484	10484					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394003	1	690.360321	689.353045	1.2527	0.00086481	3.8533	0.0026602	5.106	0.003525	690.3627769844518	38.922	0.16816	38.927	38.855	39.023	0.0046806	747	67	1.1737292	0.039791226	1.1722097	239.75937	0	8.128204						183	8	2	NaN	NaN	NaN	0.84945	1	2937	2937		0	0	1	20064			13204	3257	7590	7754	10485	10485					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394003	1	690.360321	689.353045	1.1759	0.00081178	4.1685	0.0028778	5.3444	0.0036895	690.3631459020658	35.963	0.33746	35.964	35.867	36.205	0.0011024	750	85	1.1719203	0.05064881	1.1704009	239.38983	0	10.3461						425	15	2	NaN	NaN	NaN	0.84945	1	2941	2941		0	0	1	62244			13205	3257	7590	7754	10486	10486					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394003	1	690.360321	689.353045	0.95807	0.00066141	4.4529	0.0030741	5.411	0.0037355	690.3632855115865	30.1	0.26547	30.094	29.997	30.263	-0.0064106	729	88	1.184579	0.05245483	1.1830596	241.97566	0	10.715027						331	12	2	NaN	NaN	NaN	0.84887	1	2943	2943		0.32989	0	1	27629			13206	3257	7590	7754	10487	10487					-0.004057427887232734
LCVKGGGG	8	Unmodified	_LCVKGGGG_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394003	1	690.360321	689.353045	0.54329	0.00037506	5.1992	0.0035893	5.7425	0.0039644	690.3641022789562	31.717	0.19311	31.712	31.688	31.881	-0.0044155	756	91	1.1683017	0.054249167	1.1667823	238.65067	0	11.081543						301	9	2	NaN	NaN	NaN	0.84887	1	2949	2949		0.32989	0	1	43878			13207	3257	7590	7754	10488	10488					-0.004057427887232734
LCVKGGGG	8	Unmodified						0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	0.61828	0.00042683	4.4965	0.0031042	5.1147	0.003531	690.3635831821271	33.695	0.24133	33.694	33.645	33.887	-0.0018501	741	130	1.1773466	0.077711344	1.1758271	240.49829		15.874207	0.082849	0.00022743	0.0019535	NaN	0	344	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26537			13208	3257	7590	7754							-0.004057427887232734
LCVRVYGV	8	Unmodified	_LCVRVYGV_					0	0	0		ENST00000367537.7_2_1:183522520-183522703:+|nuORF	ENST00000367537.7_2_1:183522520-183522703:+|nuORF	ENST00000367537.7_2_1:183522520-183522703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.75475555815007	2	454.754756	907.494958	0.79006	0.00035929	-5.3047	-0.0024123	-4.5146	-0.002053	454.7521956126277	20.887	0.096344	20.887	20.862	20.959	0	1383	64	0.7858409	0.0388453	0.7858409	319.5379	0	15.795227						137	5	2	NaN	NaN	NaN	0.80071	1	6197	6197		9.1232	0.16122	1	13206			13209	6624	7591	7755	10489	10489					0.037510502335976526
LCYALELPR	9	Unmodified	_LCYALELPR_					0	0	0			REV__nc|ENSG00000184979|Q9UMW8-2|USP18	REV__nc|ENSG00000184979|Q9UMW8-2|USP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.29170217045	2	539.291702	1076.56885	1.8814	0.0010146	-11.794	-0.0063603	-9.9125	-0.0053457	539.2858585792862	16.734	0.095922	16.734	16.686	16.782	0	1266	46	0.85786515	0.027644694	0.85786515	348.00647	0	11.214508						144	5	3	NaN	NaN	NaN	0.2961	1	11831	11831		19.164	4.3096	1	24725	+		13210	10942	7592	7756	10490	10490					0.03362973605226216
LDAAALPK	8	Unmodified	_LDAAALPK_					0	0	0			REV__ENST00000261353.8_1_2:30369879-30379498:+|nuORF	REV__ENST00000261353.8_1_2:30369879-30379498:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.4719803788	1	798.47198	797.464704	1.4906	0.0011902	-1.2391	-0.00098935	0.2515	0.00020082	798.470692008733	30.632	0.072411	30.632	30.608	30.68	0	537	43	1.2998781	0.02513814	1.2998781	264.82608	0	5.1214294						75	4	2	NaN	NaN	NaN	0.8439	1	4726	4726		3.1533	1.7138	1	7735.3	+		13211	11543	7593	7757	10491	10491					0.05787014840041138
LDAAALPK	8	Unmodified						0	0	0			REV__ENST00000261353.8_1_2:30369879-30379498:+|nuORF	REV__ENST00000261353.8_1_2:30369879-30379498:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.47198	797.464704	1.4906	0.0011902	-1.2391	-0.00098935	0.2515	0.00020082	798.470692008733	30.632	0.072411	30.632	30.608	30.68	0	537	43	1.2998781	0.02513814	1.2998781	264.82608		5.1214294	0.0034002	0.0013028	0.00075972	NaN	3.1533	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7735.3	+		13212	11543	7593	7757							0.05787014840041138
LDAEDLADI	9	Unmodified	_LDAEDLADI_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4676828618998	1	974.467683	973.460406	1.4598	0.0014225	-0.33444	-0.0003259	1.1253	0.0010966	974.4683751496915	24.357	0.09651	24.357	24.333	24.43	0	318	55	1.4304334	0.032063365	1.4304334	290.53094	0	6.5122986						99	5	2	NaN	NaN	NaN	0.011942	1	7695	7695		87.021	6.3821	1	9665.5			13213	2185	7594	7758	10492	10492					-0.027385391642042123
LDAEDLADI	9	Unmodified						0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.467683	973.460406	1.6708	0.0016281	0.8686	0.00084643	2.5394	0.0024746	974.4696501624129	24.357	0.09656	24.344	24.32	24.417	-0.012747	318	46	1.4304334	0.026720881	1.428914	290.5309		5.427185	-0.0065043	0.00049448	-0.00075972	NaN	87.021	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8320.8			13214	2185	7594	7758							-0.027385391642042123
LDAGGSAL	8	Unmodified	_LDAGGSAL_					0	0	0			REV__ENSG00000166819|ENST00000300055|PLIN1	REV__ENSG00000166819|ENST00000300055|PLIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3620955784	1	703.362096	702.354819	1.1169	0.00078558	1.2945	0.00091052	2.4114	0.0016961	703.3627938318641	19.803	0.24065	19.789	19.741	19.982	-0.014141	663	64	1.2243022	0.03787899	1.2227827	249.99982	0	7.7348022						210	11	2	NaN	NaN	NaN	0.77489	1	3199	3199		12.588	0	1	32965	+		13215	10449	7595	7759	10493	10493					-0.008264104991440036
LDAHAGAA	8	Unmodified	_LDAHAGAA_					0	0	0			REV__ENST00000463947.5_1_3:52558507-52559018:-|nuORF	REV__ENST00000463947.5_1_3:52558507-52559018:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3576789025	1	725.357679	724.350402	1.104	0.00080076	-6.3101	-0.004577	-5.2061	-0.0037763	725.3528436619749	28.483	0.19301	28.475	28.427	28.62	-0.0083504	594	106	1.265731	0.06303048	1.2642115	258.3094	0	12.86322						345	9	3	NaN	NaN	NaN	0.82332	1	3592	3592		6.0903	0	1	42467	+		13216	12281	7596	7760	10494	10494					-0.022798749220555692
LDCLCAWQ	8	Unmodified	_LDCLCAWQ_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.406285354	1	951.406285	950.399009	1.4088	0.0013403	-3.8413	-0.0036546	-2.4325	-0.0023143	951.4019328371371	26.722	0.096529	26.711	26.687	26.783	-0.010645	174	46	1.5157272	0.026587963	1.5142077	307.95895	0	5.402008						92	5	3	NaN	NaN	NaN	0.65075	1	6958	6958		22.126	4.346	1	7591.3	+		13217	8363	7597	7761	10495	10495					-0.07817465668824752
LDCLCAWQ	8	Unmodified						0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	951.406285	950.399009	1.5807	0.0015039	-5.0089	-0.0047655	-3.4282	-0.0032616	951.4021896549758	26.698	0.12115	26.698	26.674	26.795	0	174	52	1.5157272	0.03013289	1.5157272	307.95895		6.122284	-0.0065755	-0.00052915	0.00075972	NaN	22.126	106	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9978.5	+		13218	8363	7597	7761							-0.07817465668824752
LDCLCAWQ	8	Unmodified						0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	951.406285	950.399009	1.4088	0.0013403	-3.8413	-0.0036546	-2.4325	-0.0023143	951.4019328371371	26.722	0.096529	26.711	26.687	26.783	-0.010645	174	46	1.5157272	0.026587963	1.5142077	307.95895		5.402008	0.0065755	0.00058172	-0.00075972	NaN	22.126	92	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7591.3	+		13219	8363	7597	7761							-0.07817465668824752
LDCPNGNA	8	Unmodified	_LDCPNGNA_					0	0	0			REV__ENSG00000187871|ENST00000340465|GFRAL	REV__ENSG00000187871|ENST00000340465|GFRAL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3352289009	1	803.335229	802.327952	1.302	0.0010459	-7.6007	-0.0061059	-6.2987	-0.00506	803.3288385365348	31.645	0.024122	31.64	31.64	31.664	-0.0044174	525	43	1.3070582	0.025122166	1.3055388	266.2616	0	5.1176453						49	2	2	NaN	NaN	NaN	0.84455	1	4679	4679		2.7852	0	1	4237.7	+		13220	11037	7598	7762	10496	10496					-0.0811184238198166
LDDGDMVL	8	Unmodified	_LDDGDMVL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.3971604557001	1	877.39716	876.389884	2.0314	0.0017824	4.5638	0.0040043	6.5952	0.0057866	877.3979407783726	25.636	0.096567	25.636	25.588	25.684	0	438	43	1.359022	0.025047183	1.359022	276.45312	0	5.0951233						111	5	3	NaN	NaN	NaN	0.82797	1	5745	5745		5.4659	0	1	7438			13221	2318	7599	7763	10497	10497					-0.0532553575349084
LDDNGHACIPD	11	Unmodified	_LDDNGHACIPD_					0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.24821991355	2	585.24822	1168.48189	1.7043	0.00099745	-5.7538	-0.0033674	-4.0495	-0.0023699	585.2443829643778	24.116	0.16895	24.116	24.044	24.213	0	1203	67	0.8965218	0.040455878	0.8965218	363.32645	0	16.395233						253	8	4	NaN	NaN	NaN	0.65577	1	15419	15419		10.36	4.1099	1	25745	+		13222	8671	7600	7764	10498	10498					-0.09561477407123675
LDDNGHACIPD	11	Unmodified						0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.24822	1168.48189	1.7043	0.00099745	-5.7538	-0.0033674	-4.0495	-0.0023699	585.2443829643778	24.116	0.16895	24.116	24.044	24.213	0	1203	67	0.8965218	0.040455878	0.8965218	363.32645		16.395233	-0.0056061	-0.00019836	0.00075972	NaN	10.36	253	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25745	+		13223	8671	7600	7764							-0.09561477407123675
LDDNGHACIPD	11	Unmodified						0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.24822	1168.48189	1.4381	0.00084165	-5.4477	-0.0031883	-4.0096	-0.0023466	585.2448481860351	24.14	0.19298	24.127	24.006	24.199	-0.012749	1203	49	0.8965218	0.029419243	0.89500237	363.32645		11.922516	0.0056061	0.0001599	-0.00075972	NaN	10.36	178	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20350	+		13224	8671	7600	7764							-0.09561477407123675
LDDPGKKVK	9	Unmodified	_LDDPGKKVK_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.29529910440004	2	500.295299	998.576045	1.2975	0.00064912	3.3099	0.0016559	4.6074	0.0023051	500.2976581077093	24.285	0.072393	24.285	24.261	24.333	0	1290	40	0.84311575	0.023979485	0.84311575	342.36035	0	9.737244						55	4	2	NaN	NaN	NaN	0.33629	1	8537	8537		16.584	1.1215	1	8647.8			13225	604	7601	7765	10499	10499					0.07670029477333173
LDDPGKKVK	9	Unmodified						0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	500.295299	998.576045	1.3922	0.0006965	6.2611	0.0031324	7.6533	0.0038289	500.29891547694365	24.333	0.048285	24.32	24.296	24.344	-0.012749	1290	34	0.84311575	0.020290375	0.8415963	342.36032		8.239227	0.017625	0.0013736	-0.00075972	NaN	16.584	61	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6713.5			13226	604	7601	7765							0.07670029477333173
LDDPKRLA	8	Unmodified	_LDDPKRLA_					0	0	0			REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.5258068633	1	927.525807	926.51853	1.9797	0.0018363	-5.8598	-0.0054351	-3.8801	-0.0035989	927.5204148943578	53.242	0.16813	53.242	53.218	53.386	0	162	52	1.5228153	0.030120134	1.5228153	309.513	0	6.1219482						192	8	3	NaN	NaN	NaN	0.82797	1	6526	6526		5.4659	0	1	18348	+		13227	9465	7602	7766	10500	10500					0.05233187271744555
LDDPKRLA	8	Unmodified						0	0	0			REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	927.525807	926.51853	1.9797	0.0018363	-5.8598	-0.0054351	-3.8801	-0.0035989	927.5204148943578	53.242	0.16813	53.242	53.218	53.386	0	162	52	1.5228153	0.030120134	1.5228153	309.513		6.1219482	-0.010929	-0.0007919	-0.00012607	NaN	5.4659	192	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18348	+		13228	9465	7602	7766							0.05233187271744555
LDDPKRLA	8	Unmodified						0	0	0			REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	927.525807	926.51853	-0.70168	-0.00065083	-3.4092	-0.0031621	-4.1109	-0.003813	927.5219857334013	53.264	0.095982	53.264	53.24	53.336	-0.00053787	159	55	1.5245869	0.03189361	1.5230675	309.87308		6.4823914	0.010929	0.0014811	0.00012607	NaN	5.4659	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9373.9	+		13229	9465	7602	7766							0.05233187271744555
LDDVIGRL	8	Unmodified	_LDDVIGRL_					0	0	0			REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.7610921463001	2	450.761092	899.507631	1.1386	0.00051326	4.8848	0.0022019	6.0235	0.0027151	450.76352523653617	55.604	0.12015	55.604	55.556	55.677	0	1305	46	0.83389086	0.027686596	0.83389086	339.12076	0	11.259399						139	6	3	NaN	NaN	NaN	0.8439	1	6063	6063		3.1533	0	1	14945	+		13230	11299	7603	7767	10501	10501					0.05385784897487156
LDDVIGRL	8	Unmodified						0	0	0			REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	450.761092	899.507631	1.1386	0.00051326	4.8848	0.0022019	6.0235	0.0027151	450.76352523653617	55.604	0.12015	55.604	55.556	55.677	0	1305	46	0.83389086	0.027686596	0.83389086	339.12076		11.259399	0.0013497	-0.00033523	-0.0010856	NaN	3.1533	139	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14945	+		13231	11299	7603	7767							0.05385784897487156
LDDVIGRL	8	Unmodified						0	0	0			REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	REV__ENST00000490863.5_1_1:54651905-54653456:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	450.761092	899.507631	-0.27334	-0.00012321	5.9072	0.0026627	5.6338	0.0025395	450.76403844740247	55.602	0.072079	55.602	55.578	55.65	-0.00059128	1299	40	0.8375814	0.023992479	0.83606195	340.62158		9.757111	-0.0013497	0.00058643	0.0010856	NaN	3.1533	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4992.8	+		13232	11299	7603	7767							0.05385784897487156
LDEITRAQDLF	11	Unmodified	_LDEITRAQDLF_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.84334171925	2	660.843342	1319.67213	0.69261	0.0004577	-0.41342	-0.0002732	0.27919	0.0001845	661.3447134526774	33.866	0.19304	33.866	33.769	33.962	0	1101	76	0.95892316	0.045821548	0.95892316	388.09546	0	18.544891						229	9	3	NaN	NaN	NaN	0.64656	1	19107	19107		10.965	3.3775	1	16669			13233	13662	7604	7768	10502	10502					0.025081325267592547
LDELVSDLL	9	Unmodified	_LDELVSDLL_					0	0	0		ENST00000508041.1_1_3:134332031-134343939:-|nuORF;nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	ENST00000508041.1_1_3:134332031-134343939:-|nuORF	ENST00000508041.1_1_3:134332031-134343939:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5510185608001	1	1016.55102	1015.54374	1.4523	0.0014763	0.13395	0.00013616	1.5862	0.0016125	1016.5515461441572	37.431	0.19249	37.434	37.362	37.555	0.0028229	171	58	1.5174994	0.033678055	1.51598	308.03635	0	6.836273						287	9	3	NaN	NaN	NaN	0.056143	1	9035	9035		44.302	0	1	31939			13234	4954	7605	7769	10503	10503					0.03659197283673166
LDEQNEVI	8	Unmodified	_LDEQNEVI_					0	0	0			REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.23764683974997	2	480.237647	958.460741	1.4601	0.00070118	-3.2324	-0.0015523	-1.7723	-0.00085113	480.23645259399973	34.324	0.096451	34.324	34.276	34.372	0	1332	31	0.8172735	0.01847279	0.8172735	332.05542	0	7.5054016						61	5	2	NaN	NaN	NaN	0.72013	1	7290	7290		17.799	2.7861	1	4491.2	+		13235	8674	7606	7770	10504	10504					-0.020151194443315035
LDEQNEVI	8	Unmodified						0	0	0			REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	480.237647	958.460741	1.4601	0.00070118	-3.2324	-0.0015523	-1.7723	-0.00085113	480.23645259399973	34.324	0.096451	34.324	34.276	34.372	0	1332	31	0.8172735	0.01847279	0.8172735	332.05542		7.5054016	0.0012441	0.00015702	-0.00016387	NaN	17.799	61	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4491.2	+		13236	8674	7606	7770							-0.020151194443315035
LDEQNEVI	8	Unmodified						0	0	0			REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	REV__TRPM3|p.P253H|1|0.33|ENSG00000083067|chr9:70843046-70843046|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	480.237647	958.460741	1.8756	0.00090074	-3.6247	-0.0017407	-1.7491	-0.00083998	480.2364558301634	34.323	0.07225	34.322	34.274	34.346	-0.0012474	1329	43	0.81912065	0.025856256	0.8176012	332.8059		10.50531	-0.0012441	-0.00021981	0.00016387	NaN	17.799	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4507.7	+		13237	8674	7606	7770							-0.020151194443315035
LDETVEALL	9	Unmodified	_LDETVEALL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;RNF40|p.R110Q|1|0.2|ENSG00000103549|chr16:30763446-30763446|G/A|missense_variant;nc|ENSG00000103549|O75150-4|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5353684966	1	1002.53537	1001.52809	1.4384	0.001442	-3.3353	-0.0033438	-1.897	-0.0019018	1002.5312775216047	26.553	0.096527	26.542	26.542	26.639	-0.010645	216	58	1.4908947	0.03373158	1.4893752	302.6926	0	6.8484497						87	5	2	NaN	NaN	NaN	0.078597	1	8484	8484		38.918	2.3314	1	16437			13238	1450	7607	7771	10505	10505					0.02738910766618119
LDFAPPGA	8	Unmodified	_LDFAPPGA_					0	0	0		nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1	nc|ENSG00000184937|P19544-2|WT1	nc|ENSG00000184937|P19544-2|WT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.3984810847	1	787.398481	786.391205	1.7379	0.0013684	5.0634	0.0039869	6.8013	0.0053553	787.4018217074896	34.445	0.12064	34.445	34.396	34.517	0	528	52	1.3052634	0.030510306	1.3052634	265.9866	0	6.217407						120	6	2	NaN	NaN	NaN	0.84207	1	4583	4583		3.5732	0	1	11531			13239	5379	7608	7772	10506	10506					-0.010535336024304343
LDFAPPGA	8	Unmodified	_LDFAPPGA_					0	0	0		nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1	nc|ENSG00000184937|P19544-2|WT1	nc|ENSG00000184937|P19544-2|WT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.3984810847	1	787.398481	786.391205	1.4343	0.0011294	4.8713	0.0038357	6.3057	0.0049651	787.4024528257015	34.443	0.12055	34.443	34.395	34.515	-0.0006485	525	52	1.3070582	0.030507088	1.3055388	266.35233	0	6.216736						126	6	2	NaN	NaN	NaN	0.78605	1	4494	4494		11.091	0	1	12063			13240	5379	7608	7772	10507	10507					-0.010535336024304343
LDFNTKVFWVH	11	Unmodified	_LDFNTKVFWVH_					0	0	0		ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant;nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3667870258	2	703.366787	1404.71902	1.1525	0.00081062	-0.3903	-0.00027453	0.76218	0.00053609	703.8669310588272	26.674	0.048271	26.674	26.65	26.698	0	1047	46	0.99186665	0.027424872	0.99186665	401.17642	0	11.092438						62	3	2	NaN	NaN	NaN	0.6875	1	20105	20105		8.2775	1.2932	1	5127.1			13241	54	7609	7773	10508	10508					0.03285036868555835
LDFPISLW	8	Unmodified	_LDFPISLW_					0	0	0			REV__SSTR2|p.W108Gfs*12|1|0.4|ENSG00000180616|chr17:73169640-73169640|C/-|frameshift_variant	REV__SSTR2|p.W108Gfs*12|1|0.4|ENSG00000180616|chr17:73169640-73169640|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5294952577002	1	990.529495	989.522219	1.3485	0.0013357	5.0097	0.0049623	6.3582	0.006298	990.5362030427556	32.417	0.4344	32.414	32.245	32.679	-0.0031052	189	121	1.5068626	0.07100272	1.5053432	305.98486	0	14.417877						701	19	2	NaN	NaN	NaN	0.27293	1	8031	8031		44.247	5.329	1	113850	+		13242	10833	7610	7774	10509	10509					0.027038570456284106
LDFRTIYLV	9	Unmodified	_LDFRTIYLV_					0	0	0			REV__ENST00000485925.5_1_9:136279761-136305516:+|nuORF	REV__ENST00000485925.5_1_9:136279761-136305516:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3265992328	2	570.326599	1138.63865	1.6856	0.00096136	-4.9028	-0.0027962	-3.2171	-0.0018348	570.3238525418519	27.784	0.096506	27.784	27.76	27.857	0	1185	52	0.90755045	0.031249523	0.90755045	367.9084	0	12.668152						105	5	3	NaN	NaN	NaN	0.40649	1	14412	14412		13.463	2.8581	1	15662	+		13243	10201	7611	7775	10510	10510					0.07487175545520586
LDGALFETI	9	Unmodified	_LDGALFETI_					0	0	0			REV__TMEM130|p.V134A|1|0.29|ENSG00000166448|chr7:98860329-98860329|A/G|missense_variant	REV__TMEM130|p.V134A|1|0.29|ENSG00000166448|chr7:98860329-98860329|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.514239124	1	978.514239	977.506963	1.2318	0.0012053	-10.658	-0.010429	-9.4267	-0.0092242	978.5031476234612	31.018	0.19311	31.018	30.946	31.139	0	258	82	1.4660252	0.04799044	1.4660252	297.74274	0	9.746643						285	9	2	NaN	NaN	NaN	0.14301	1	7819	7819		29.598	2.8668	1	45144	+		13244	13376	7612	7776	10511	10511					0.01730945457757116
LDGALPDP	8	Unmodified	_LDGALPDP_					0	0	0			REV__ENST00000574767.5_1_17:78518930-78519083:+|nuORF	REV__ENST00000574767.5_1_17:78518930-78519083:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.4039603931	1	797.40396	796.396684	2.0616	0.0016439	-5.2644	-0.0041979	-3.2028	-0.0025539	797.4010099080589	26.601	0.048292	26.601	26.577	26.625	0	486	76	1.3303722	0.044834614	1.3303722	271.04486	0	9.13443						63	3	2	NaN	NaN	NaN	0.78264	1	4712	4712		11.548	0	1	3466	+		13245	12841	7613	7777	10512	10512					-0.00965854810624478
LDGATAGV	8	Unmodified	_LDGATAGV_					0	0	0		ENST00000596105.2_1_19:18119032-18119587:+|nuORF;ENST00000593460.1_1_19:18119032-18119587:+|nuORF;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3620955784002	1	703.362096	702.354819	1.463	0.001029	-0.15663	-0.00011017	1.3064	0.00091887	703.3618889330482	19.78	0.26443	19.78	19.756	20.021	0	663	67	1.2243022	0.03968489	1.2243022	249.99983	0	8.103561						302	12	2	NaN	NaN	NaN	0.50567	1	3253	3253		30.791	0	1	46298			13246	1554	7614	7778	10513	10513					-0.008264104991326349
LDGATAGV	8	Unmodified						0	0	0		ENST00000596105.2_1_19:18119032-18119587:+|nuORF;ENST00000593460.1_1_19:18119032-18119587:+|nuORF;ENSG00000105643|ENST00000222250|ARRDC2	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	ENST00000596105.2_1_19:18119032-18119587:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	703.362096	702.354819	1.1169	0.00078558	1.2945	0.00091052	2.4114	0.0016961	703.3627938318641	19.803	0.24065	19.789	19.741	19.982	-0.014141	663	64	1.2243022	0.03787899	1.2227827	249.99982		7.7348022	0.0045148	0.00051161	-0.00075972	NaN	30.791	210	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32965			13247	1554	7614	7778							-0.008264104991326349
LDGGVAPA	8	Unmodified	_LDGGVAPA_					0	0	0		ENST00000527249.5_1_11:65767937-65769464:-|nuORF;ENST00000312234.6_1_11:65767899-65769464:-|nuORF;ENST00000532707.5_1_11:65767826-65769464:-|nuORF	ENST00000527249.5_1_11:65767937-65769464:-|nuORF	ENST00000527249.5_1_11:65767937-65769464:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3671809563	1	699.367181	698.359904	0.93153	0.00065148	6.4145	0.0044861	7.3461	0.0051376	699.3714117912826	29.208	0.16896	29.208	29.16	29.329	0	612	76	1.2549332	0.044997692	1.2549332	256.28265	0	9.189423						201	8	3	NaN	NaN	NaN	0.78605	1	3195	3195		11.091	4.2967	1	21915			13248	6453	7615	7779	10514	10514					-0.0013410663652848598
LDGGVAPA	8	Unmodified	_LDGGVAPA_					0	0	0		ENST00000527249.5_1_11:65767937-65769464:-|nuORF;ENST00000312234.6_1_11:65767899-65769464:-|nuORF;ENST00000532707.5_1_11:65767826-65769464:-|nuORF	ENST00000527249.5_1_11:65767937-65769464:-|nuORF	ENST00000527249.5_1_11:65767937-65769464:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3671809563	1	699.367181	698.359904	0.69988	0.00048947	5.9717	0.0041764	6.6715	0.0046659	699.3711796363458	29.207	0.19308	29.2	29.151	29.344	-0.0077209	609	73	1.2567334	0.043195486	1.255214	256.65027	0	8.821365						215	9	2	NaN	NaN	NaN	0.84651	1	3130	3130		1.6704	0	1	29379			13249	6453	7615	7779	10515	10515					-0.0013410663652848598
LDGLDTPSE	9	Unmodified	_LDGLDTPSE_					0	0	0		ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2;ENST00000477543.1_1_15:59971734-59981480:-|nuORF;ENST00000560458.5_1_15:59970098-59981480:-|nuORF	ENSG00000140299|ENST00000607373|BNIP2	ENSG00000140299|ENST00000607373|BNIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.72182960005	2	473.72183	945.429106	1.4382	0.00068129	3.5276	0.0016711	4.9657	0.0023524	473.7240911003421	22.187	0.14474	22.187	22.163	22.308	0	1356	40	0.8024889	0.024036646	0.8024889	326.112	0	9.767914						107	7	3	NaN	NaN	NaN	0.27442	1	6947	6947		20.555	1.4371	1	9124.4			13250	3261	7616	7780	10516	10516					-0.04579112198268831
LDGNKGSRVMT	11	Unmodified	_LDGNKGSRVMT_					0	0	0			REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.30332948925	2	589.303329	1176.59211	1.8371	0.0010826	-0.96039	-0.00056596	0.87672	0.00051665	589.8029868207693	25.322	0.21717	25.322	25.25	25.467	0	1179	82	0.9112251	0.049583375	0.9112251	369.2554	0	20.092682						239	10	4	NaN	NaN	NaN	0.63477	1	15705	15705		11.739	0.77375	1	26674	+		13251	12567	7617	7781	10517	10517					0.01087367651916793
LDGNKGSRVMT	11	Unmodified						0	0	0			REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.303329	1176.59211	1.8371	0.0010826	-0.96039	-0.00056596	0.87672	0.00051665	589.8029868207693	25.322	0.21717	25.322	25.25	25.467	0	1179	82	0.9112251	0.049583375	0.9112251	369.2554		20.092682	0.12675	-0.0043081	-0.0029137	NaN	11.739	239	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26674	+		13252	12567	7617	7781							0.01087367651916793
LDGNKGSRVMT	11	Unmodified						0	0	0			REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	REV__ENST00000513603.1_1_5:102442389-102455787:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.303329	1176.59211	1.4372	0.00084696	4.5988	0.0027101	6.036	0.003557	589.3066199492531	25.081	0.24127	25.069	24.876	25.117	-0.012011	1167	97	0.91857195	0.05876237	0.9170525	372.23254		23.812256	-0.12675	0.0022441	0.0029137	NaN	11.739	332	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81070	+		13253	12567	7617	7781							0.01087367651916793
LDGSAPVP	8	Unmodified	_LDGSAPVP_					0	0	0		ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068	1	755.393396	754.386119	1.3798	0.0010423	4.2128	0.0031823	5.5925	0.0042246	755.3961404768078	36.95	0.096123	36.952	36.952	37.048	0.0022507	561	46	1.2855089	0.026952505	1.2839894	262.15158	0	5.4963684						95	5	2	NaN	NaN	NaN	0.82332	1	4063	4063		6.0903	0	1	10898			13254	6781	7618	7782	10518	10518					-0.0008983746505464296
LDGSAPVP	8	Unmodified						0	0	0		ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	ENST00000394957.7_1_10:73510788-73511004:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.393396	754.386119	1.3861	0.0010471	5.8891	0.0044486	7.2752	0.0054957	755.3976472380101	36.784	0.12027	36.784	36.736	36.856	0	564	73	1.2837118	0.043130875	1.2837118	261.78513		8.795624	-0.084204	0.00048586	-0.00013879	NaN	6.0903	156	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20754			13255	6781	7618	7782							-0.0008983746505464296
LDHMTGREML	10	Unmodified	_LDHMTGREML_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7864580045501	2	601.786458	1201.55836	1.418	0.00085334	-10.358	-0.0062333	-8.94	-0.00538	602.2818003576472	23.561	0.04822	23.548	23.524	23.572	-0.013048	1170	76	0.91673553	0.04594034	0.9152161	371.399	0	18.611908						143	3	3	NaN	NaN	NaN	0.5917	1	15867	15867		15.463	1.9996	1	19290			13256	4580	7619	7783	10519	10519					-0.03435377111463822
LDHRMEVL	8	Unmodified	_LDHRMEVL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5244266548001	1	1012.52443	1011.51715	0.95445	0.0009664	-3.2649	-0.0033058	-2.3105	-0.0023394	1012.520990653238	35.241	0.16888	35.241	35.192	35.361	0	258	106	1.4660252	0.0621835	1.4660252	297.6035	0	12.6232605						294	8	3	NaN	NaN	NaN	0.35353	1	9043	9043		38.918	0	1	36749			13257	2947	7620	7784	10520	10520					0.011852299113456866
LDIDHSQPC	9	Unmodified	_LDIDHSQPC_					0	0	0			REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2292988789001	2	514.229299	1026.44404	1.4338	0.00073729	-0.37599	-0.00019335	1.0578	0.00054394	514.2277046624372	31.863	0.072388	31.863	31.815	31.887	0	1329	43	0.81912065	0.025856256	0.81912065	332.49402	0	10.495453						60	4	2	NaN	NaN	NaN	0.67082	1	9615	9615		1.7022	0.63018	1	5344.3	+		13258	9545	7621	7785	10521	10521					-0.0681194360192876
LDIDHSQPC	9	Unmodified						0	0	0			REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.229299	1026.44404	1.4338	0.00073729	-0.37599	-0.00019335	1.0578	0.00054394	514.2277046624372	31.863	0.072388	31.863	31.815	31.887	0	1329	43	0.81912065	0.025856256	0.81912065	332.49402		10.495453	0.002733	-0.0015174	-0.00016377	NaN	1.7022	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5344.3	+		13259	9545	7621	7785							-0.0681194360192876
LDIDHSQPC	9	Unmodified						0	0	0			REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.229299	1026.44404	0.74834	0.00038482	2.1423	0.0011016	2.8907	0.0014865	514.2304798972287	31.862	0.072395	31.857	31.809	31.881	-0.0044155	1326	43	0.8209676	0.025850594	0.81944823	333.24374		10.493164	-0.002733	0.0010726	0.00016377	NaN	1.7022	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6057.8	+		13260	9545	7621	7785							-0.0681194360192876
LDINDFVPV	9	Unmodified	_LDINDFVPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.27403234605	2	516.274032	1030.53351	1.6202	0.00083646	-5.4572	-0.0028174	-3.837	-0.001981	516.271240359852	17.138	0.11991	17.124	17.1	17.22	-0.013569	1323	61	0.8228144	0.036917448	0.82129496	333.97586	0	14.984589						106	6	2	NaN	NaN	NaN	0.41766	1	9596	9596		13.003	2.3979	1	12002			13261	5604	7622	7786	10522	10522					0.01946634349087617
LDINDFVPV	9	Unmodified						0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.274032	1030.53351	2.03	0.001048	-7.608	-0.0039278	-5.578	-0.0028798	516.2703909945235	17.117	0.21608	17.117	16.997	17.213	0	1323	55	0.8228144	0.03322929	0.8228144	333.97586		13.48761	-0.0035352	-0.0016533	0.00075972	NaN	13.003	114	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11076			13262	5604	7622	7786							0.01946634349087617
LDKCTKGDE	9	Unmodified	_LDKCTKGDE_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.73695673550003	2	504.736957	1007.45936	1.5489	0.00078179	3.0732	0.0015511	4.6221	0.0023329	504.7390681908554	28.677	0.14477	28.677	28.629	28.774	0	1308	55	0.83204526	0.03322929	0.83204526	337.82452	0	13.491669						122	7	2	NaN	NaN	NaN	0.35794	1	8871	8871		15.463	4.8577	1	12326	+		13263	9748	7623	7787	10523	10523					-0.04407076804727694
LDKCTKGDE	9	Unmodified						0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	504.736957	1007.45936	1.5489	0.00078179	3.0732	0.0015511	4.6221	0.0023329	504.7390681908554	28.677	0.14477	28.677	28.629	28.774	0	1308	55	0.83204526	0.03322929	0.83204526	337.82452		13.491669	0.0045442	0.00050814	0.00075972	NaN	15.463	122	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12326	+		13264	9748	7623	7787							-0.04407076804727694
LDKDMEKL	8	Unmodified	_LDKDMEKL_					0	0	0			REV__ENST00000527224.1_1_11:65837957-65984297:+|nuORF	REV__ENST00000527224.1_1_11:65837957-65984297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.26006769105	2	496.260068	990.505582	1.4108	0.00070011	-2.5506	-0.0012658	-1.1399	-0.00056566	496.25958760369736	21.151	0.072266	21.151	21.079	21.151	0	1326	82	0.8209676	0.04986292	0.8209676	333.4037	0	20.249878						111	4	2	NaN	NaN	NaN	0.82627	1	8232	8232		5.6942	0	1	9970.5	+		13265	10719	7624	7788	10524	10524					0.00994988097352234
LDKYDIMLL	9	Unmodified	_LDKYDIMLL_					0	0	0		nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF	nc|ENSG00000136059|O15195-2|VILL	nc|ENSG00000136059|O15195-2|VILL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.30701788365	2	562.307018	1122.59948	1.1165	0.0006278	-3.9345	-0.0022124	-2.8181	-0.0015846	562.3053523900227	28.363	0.096508	28.354	28.281	28.378	-0.0089779	1221	61	0.885486	0.036790013	0.88396657	359.02512	0	14.916687						181	5	3	NaN	NaN	NaN	0.19268	1	13382	13382		25.801	4.0299	1	38812			13266	2991	7625	7789	10525	10525					0.0430870719962968
LDKYDLIE	8	Unmodified	_LDKYDLIE_					0	0	0			REV__nc|ENSG00000099204|O14639-4|ABLIM1	REV__nc|ENSG00000099204|O14639-4|ABLIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5248038103	1	1008.5248	1007.51753	1.4446	0.001457	-2.7836	-0.0028074	-1.339	-0.0013504	1008.5220476367452	28.676	0.28955	28.668	28.596	28.885	-0.0083504	198	91	1.5015416	0.053229332	1.5000222	304.82962	0	10.806152						546	13	4	NaN	NaN	NaN	0.26796	1	8714	8714		44.638	5.1797	1	82024	+		13267	8767	7626	7790	10526	10526					0.01406928112191963
LDKYWHFQK	9	Unmodified	_LDKYWHFQK_					0	0	0			REV__nc|ENSG00000105855|P26012-2|ITGB8	REV__nc|ENSG00000105855|P26012-2|ITGB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.82729772455	2	632.827298	1263.64004	1.6547	0.0010471	-4.4041	-0.002787	-2.7494	-0.0017399	632.8247668790498	19.25	0.072086	19.236	19.188	19.26	-0.014141	1149	49	0.92958635	0.029358983	0.9280669	376.39508	0	11.887634						103	4	3	NaN	NaN	NaN	0.41766	1	17287	17287		13.003	0.95414	1	9575	+		13268	8975	7627	7791	10527	10527					0.01876809634268284
LDKYWHFQK	9	Unmodified						0	0	0			REV__nc|ENSG00000105855|P26012-2|ITGB8	REV__nc|ENSG00000105855|P26012-2|ITGB8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.827298	1263.64004	1.6309	0.0010321	-2.9739	-0.001882	-1.343	-0.00084991	632.8262086491552	19.228	0.12	19.228	19.156	19.276	0	1152	52	0.92775106	0.031198978	0.92775106	375.65198		12.63266	-0.0039228	0.0010259	-0.0001579	NaN	13.003	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12618	+		13269	8975	7627	7791							0.01876809634268284
LDKYWHFQK	9	Unmodified						0	0	0			REV__nc|ENSG00000105855|P26012-2|ITGB8	REV__nc|ENSG00000105855|P26012-2|ITGB8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.827298	1263.64004	1.6547	0.0010471	-4.4041	-0.002787	-2.7494	-0.0017399	632.8247668790498	19.25	0.072086	19.236	19.188	19.26	-0.014141	1149	49	0.92958635	0.029358983	0.9280669	376.39508		11.887634	0.0039228	-0.00078424	0.0001579	NaN	13.003	103	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9575	+		13270	8975	7627	7791							0.01876809634268284
LDLPASPA	8	Unmodified	_LDLPASPA_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-2|THSD1	REV__nc|ENSG00000136114|Q9NS62-2|THSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4246958352	1	783.424696	782.417419	1.3893	0.0010884	4.8521	0.0038013	6.2414	0.0048897	783.4281270368772	35.771	0.19293	35.771	35.723	35.916	0	474	61	1.3375392	0.035835147	1.3375392	272.5875	0	7.3031616						266	9	3	NaN	NaN	NaN	0.80071	1	4529	4529		9.1232	0	1	39532	+		13271	9650	7628	7792	10528	10528					0.017507355690440818
LDLPPAGT	8	Unmodified	_LDLPPAGT_					0	0	0		nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	nc|ENSG00000100083|Q9UJY5-3|GGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4246958351999	1	783.424696	782.417419	1.0151	0.00079522	5.4097	0.0042381	6.4248	0.0050333	783.4285642298713	31.596	0.24135	31.592	31.519	31.761	-0.0044174	501	136	1.3214091	0.08077991	1.3198897	269.3002	0	16.462769						461	11	4	NaN	NaN	NaN	0.74229	1	4443	4443		16.417	0	1	115750			13272	1189	7629	7793	10529	10529					0.01750735569032713
LDLRHWELWIW	11	Unmodified	_LDLRHWELWIW_					0	0	0			REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.9453826289667	3	522.945383	1565.81432	1.5202	0.00079496	0.85035	0.00044469	2.3705	0.0012396	522.9452175215281	22.356	0.096457	22.356	22.332	22.429	0	1380	34	0.7876915	0.020356357	0.7876915	477.40942	0	12.3377075						111	5	4	NaN	NaN	NaN	0.77082	1	20715	20715		1.8502	0.16965	1	9935.3	+		13273	12859	7630	7794	10530	10530					0.05404390059607067
LDLRHWELWIW	11	Unmodified	_LDLRHWELWIW_					0	0	0			REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.9453826289667	3	522.945383	1565.81432	1.2886	0.00067386	0.90379	0.00047263	2.1924	0.0011465	522.9461167178463	22.404	0.072115	22.39	22.366	22.438	-0.013733	1380	58	0.7876915	0.035176277	0.78617203	477.40942	0	21.319855						99	4	3	NaN	NaN	NaN	0.77178	1	19698	19698		1.6806	1.1236	1	10604	+		13274	12859	7630	7794	10531	10531					0.05404390059607067
LDLRHWELWIW	11	Unmodified						0	0	0			REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	522.945383	1565.81432	1.5202	0.00079496	0.85035	0.00044469	2.3705	0.0012396	522.9452175215281	22.356	0.096457	22.356	22.332	22.429	0	1380	34	0.7876915	0.020356357	0.7876915	477.40942		12.3377075	-0.016947	-3.8467E-05	0.00075972	NaN	1.8502	111	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9935.3	+		13275	12859	7630	7794							0.05404390059607067
LDLRHWELWIW	11	Unmodified						0	0	0			REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	REV__ENST00000583562.1_1_17:62500096-62500153:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	522.945383	1565.81432	1.2886	0.00067386	0.90379	0.00047263	2.1924	0.0011465	522.9461167178463	22.404	0.072115	22.39	22.366	22.438	-0.013733	1380	58	0.7876915	0.035176277	0.78617203	477.40942		21.319855	0.016947	4.5374E-05	-0.00075972	NaN	1.8502	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10604	+		13276	12859	7630	7794							0.05404390059607067
LDLSQDLLI	9	Unmodified	_LDLSQDLLI_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2949647534001	2	515.294965	1028.57538	1.3806	0.00071142	-0.17894	-9.2209E-05	1.2017	0.00061921	515.2950556250535	19.082	0.072094	19.068	19.044	19.116	-0.014059	1296	103	0.8394264	0.06269193	0.83790696	340.7271	0	25.44693						155	4	3	NaN	NaN	NaN	0.048656	1	9529	9529		47.482	10.179	1	20454	+		13277	8752	7631	7795	10532	10532					0.06223190037621862
LDLTLLDTF	9	Unmodified	_LDLTLLDTF_					0	0	0			REV__CON__Q2KIF2	REV__CON__Q2KIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.78951523475	2	525.789515	1049.56448	0.77665	0.00040835	-1.085	-0.00057049	-0.30836	-0.00016213	525.7888823243616	35.818	0.12049	35.819	35.77	35.891	0.00052643	1299	55	0.8375814	0.03320414	0.83606195	339.88843	0	13.474152						235	6	4	NaN	NaN	NaN	0.028569	1	10403	10403		80.639	0	1	35824	+	+	13278	8273	7632	7796	10533	10533					0.04167787663322997
LDLTLLDTF	9	Unmodified						0	0	0			REV__CON__Q2KIF2	REV__CON__Q2KIF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.789515	1049.56448	0.77665	0.00040835	-1.085	-0.00057049	-0.30836	-0.00016213	525.7888823243616	35.818	0.12049	35.819	35.77	35.891	0.00052643	1299	55	0.8375814	0.03320414	0.83606195	339.88843		13.474152	-0.00050888	0.00022882	-0.00075972	NaN	80.639	235	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35824	+	+	13279	8273	7632	7796							0.04167787663322997
LDLYLIAH	8	Unmodified	_LDLYLIAH_					0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.27383538080005	2	479.273835	956.533118	1.7394	0.00083366	5.7653	0.0027631	7.5047	0.0035968	479.27659107304703	28.894	0.31377	28.894	28.701	29.015	0	1275	136	0.85233563	0.08292532	0.85233563	346.31085	0	33.693237						757	14	4	NaN	NaN	NaN	0.8439	1	7256	7256		3.1533	1.7138	1	157990	+		13280	12099	7633	7797	10534	10534					0.0531125941990922
LDLYLIAH	8	Unmodified						0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	479.273835	956.533118	1.7394	0.00083366	5.7653	0.0027631	7.5047	0.0035968	479.27659107304703	28.894	0.31377	28.894	28.701	29.015	0	1275	136	0.85233563	0.08292532	0.85233563	346.31085		33.693237	-0.11642	-0.00039581	-0.00016197	NaN	3.1533	757	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157990	+		13281	12099	7633	7797							0.0531125941990922
LDLYLIAH	8	Unmodified						0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	479.273835	956.533118	1.3934	0.00066783	6.9915	0.0033509	8.385	0.0040187	479.2770796244344	29.135	0.2172	29.127	29.079	29.296	-0.0077229	1272	181	0.854179	0.110453725	0.8526596	347.05984		44.878235	0.11642	0.00077962	0.00016197	NaN	3.1533	625	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97837	+		13282	12099	7633	7797							0.0531125941990922
LDLYPTMLW	9	Unmodified	_LDLYPTMLW_					0	0	0			REV__ENSG00000125975|ENST00000444723|C20orf173	REV__ENSG00000125975|ENST00000444723|C20orf173	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2939105084	2	576.293911	1150.57327	0.48553	0.00027981	-1.862	-0.001073	-1.3764	-0.00079323	576.2927787009719	33.527	0.24132	33.525	33.501	33.742	-0.0018501	1206	55	0.894683	0.033103883	0.89316356	362.64706	0	13.418182						252	11	3	NaN	NaN	NaN	0.66529	1	14325	14325		2.1763	0.47414	1	40547	+		13283	9410	7634	7798	10535	10535					0.004004380281457998
LDMAELIAA	9	Unmodified	_LDMAELIAA_					0	0	0			REV__nc|ENSG00000151948|Q96MS3-2|GLT1D1	REV__nc|ENSG00000151948|Q96MS3-2|GLT1D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4913951919001	1	946.491395	945.484119	1.2883	0.0012194	-1.2576	-0.0011903	0.030742	2.9097E-05	946.4907964428528	29.231	0.24132	29.224	29.175	29.417	-0.0077209	303	91	1.4393384	0.0534333	1.437819	292.46033	0	10.857178						416	11	4	NaN	NaN	NaN	0.056143	1	6825	6825		44.302	0	1	70628	+		13284	10042	7635	7799	10536	10536					0.009196030686439371
LDMALVLLL	9	Unmodified	_LDMALVLLL_					0	0	0			REV__nc|ENSG00000166589|O75309-3|CDH16	REV__nc|ENSG00000166589|O75309-3|CDH16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.6111163971001	1	1000.61112	999.60384	1.5751	0.0015761	-4.5808	-0.0045836	-3.0057	-0.0030075	1000.607620947382	41.353	0.048111	41.353	41.353	41.401	0	135	28	1.5387528	0.015929103	1.5387528	312.4173	0	3.2341003						32	3	2	NaN	NaN	NaN	0.31737	1	8588	8588		17.799	0	1	2006.9	+		13285	10441	7636	7800	10537	10537					0.10402216413206133
LDMALVLLL	9	Unmodified	_LDMALVLLL_					0	0	0			REV__nc|ENSG00000166589|O75309-3|CDH16	REV__nc|ENSG00000166589|O75309-3|CDH16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.6111163971001	1	1000.61112	999.60384	1.5282	0.0015292	-3.3783	-0.0033803	-1.85	-0.0018512	1000.6072909899914	40.919	0.36067	40.926	40.83	41.191	0.0074959	129	115	1.5422925	0.06728828	1.540773	313.13593	0	13.661713						1069	16	4	NaN	NaN	NaN	0.023074	1	8412	8412		68.108	0	1	240940	+		13286	10441	7636	7800	10538	10538					0.10402216413206133
LDMINALKN	9	Unmodified	_LDMINALKN_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1	REV__nc|ENSG00000086717|O14829-5|PPEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2813344494001	2	516.281334	1030.54812	2.1809	0.001126	1.6142	0.0008334	3.7951	0.0019594	516.2822139131998	29.136	0.55511	29.136	28.991	29.546	0	1266	82	0.85786515	0.049782038	0.85786515	348.20267	0	20.206268						1110	24	3	NaN	NaN	NaN	0.12328	1	9810	9810		32.453	3.5572	1	532300	+		13287	8690	7637	7801	10539	10539					0.03406383225592435
LDNEINSFF	9	Unmodified	_LDNEINSFF_					0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7587464226	2	549.758746	1097.50294	0.65809	0.00036179	3.1836	0.0017502	3.8417	0.002112	549.7611907873224	31.982	0.19303	31.979	31.858	32.051	-0.0037594	1254	52	0.8652351	0.03131038	0.86371565	350.91153	0	12.698456						198	9	3	NaN	NaN	NaN	0.53317	1	12400	12400		8.2448	0.70444	1	19049	+		13288	13455	7638	7802	10540	10540					-0.041911440359626795
LDNEINSFF	9	Unmodified						0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.758746	1097.50294	0.84555	0.00046485	2.8334	0.0015577	3.679	0.0020225	549.7633880504629	31.983	0.096558	31.983	31.911	32.008	0	1254	61	0.8652351	0.03685367	0.8652351	350.91153		14.946655	0.0024234	-0.00024179	0.00075972	NaN	8.2448	140	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13578	+		13289	13455	7638	7802							-0.041911440359626795
LDNEINSFF	9	Unmodified						0	0	0			REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	REV__tr|U7SP52|U7SP52_FUSNUDNAprimaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaGPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.758746	1097.50294	0.65809	0.00036179	3.1836	0.0017502	3.8417	0.002112	549.7611907873224	31.982	0.19303	31.979	31.858	32.051	-0.0037594	1254	52	0.8652351	0.03131038	0.86371565	350.91153		12.698456	-0.0024234	0.00014321	-0.00075972	NaN	8.2448	198	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19049	+		13290	13455	7638	7802							-0.041911440359626795
LDNLHFRHG	9	Unmodified	_LDNLHFRHG_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2;REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7859642261001	2	554.785964	1107.55738	0.96298	0.00053425	-0.8413	-0.00046674	0.12168	6.7506E-05	554.7852317933865	33.02	0.14463	33.018	32.993	33.138	-0.0024796	1224	94	0.883646	0.057070732	0.88212657	358.33807	0	23.143433						257	7	3	NaN	NaN	NaN	0.10956	1	12804	12804		34.439	1.0135	1	40382	+		13291	8930;10660	7639	7803	10541	10541					0.007899126261236233
LDNLHFRHG	9	Unmodified						0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2;REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.785964	1107.55738	0.96298	0.00053425	-0.8413	-0.00046674	0.12168	6.7506E-05	554.7852317933865	33.02	0.14463	33.018	32.993	33.138	-0.0024796	1224	94	0.883646	0.057070732	0.88212657	358.33807		23.143433	-0.0018008	-1.6963E-05	0.0010806	NaN	34.439	257	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40382	+		13292	8930;10660	7639	7803							0.007899126261236233
LDPEDVAVQL	10	Unmodified	_LDPEDVAVQL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.78750386205	2	549.787504	1097.56045	1.2397	0.00068159	-10.045	-0.0055224	-8.8048	-0.0048408	549.7820644295684	20.333	0.1923	20.333	20.237	20.429	0	1233	70	0.87812483	0.042324543	0.87812483	356.139	0	17.165436						152	9	2	NaN	NaN	NaN	0.66626	1	12748	12748		10.36	0.61416	1	26403			13293	3790	7640	7804	10542	10542					0.015576981696085568
LDPEGVLS	8	Unmodified	_LDPEGVLS_					0	0	0			REV__ENST00000307522.3_1_19:46916396-46916498:-|nuORF	REV__ENST00000307522.3_1_19:46916396-46916498:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.4301751436002	1	829.430175	828.422899	1.4338	0.0011892	-0.95301	-0.00079045	0.4808	0.00039879	829.4288137663343	24.212	0.072372	24.199	24.151	24.224	-0.012749	462	49	1.3447032	0.028652906	1.3431838	273.78503	0	5.8338013						98	4	2	NaN	NaN	NaN	0.30832	1	5003	5003		41.46	0	1	10438	+		13294	11678	7641	7805	10543	10543					0.0018241436087009788
LDPGGVGA	8	Unmodified	_LDPGGVGA_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3515308921001	1	685.351531	684.344254	2.7099	0.0018572	5.2047	0.003567	7.9146	0.0054243	685.3551982698727	26.288	0.43444	26.288	26.239	26.674	0	585	205	1.2711272	0.122583985	1.2711272	259.692	0	25.043976						913	19	3	NaN	NaN	NaN	0.59262	1	2932	2932		25.752	0	1	358260	+		13295	13198	7642	7806	10544	10544					-0.01054393153572164
LDPGGVGA	8	Unmodified						0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	685.351531	684.344254	2.7099	0.0018572	5.2047	0.003567	7.9146	0.0054243	685.3551982698727	26.288	0.43444	26.288	26.239	26.674	0	585	205	1.2711272	0.122583985	1.2711272	259.692		25.043976	0.005678	-0.00013595	0.00075972	NaN	25.752	913	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358260	+		13296	13198	7642	7806							-0.01054393153572164
LDPGPPGGP	9	Unmodified	_LDPGPPGGP_					0	0	0			REV__ENST00000520584.5_1_8:144333229-144335235:+|nuORF	REV__ENST00000520584.5_1_8:144333229-144335235:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	806.4042947441002	1	806.404295	805.397018	1.8189	0.0014667	6.1027	0.0049212	7.9216	0.006388	806.4089842514782	34.348	0.21703	34.348	34.3	34.517	0	465	67	1.3429124	0.03940189	1.3429124	273.5479	0	8.026093						218	10	2	NaN	NaN	NaN	0.42773	1	4811	4811		12.588	0	1	27221	+		13297	12595	7643	7807	10545	10545					-0.013464350907497646
LDPHVRDCV	9	Unmodified	_LDPHVRDCV_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;ENST00000478380.5_1_9:286487-312499:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENST00000478380.5_1_9:286487-312499:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5145902499999	1	1053.51459	1052.50731	2.6601	0.0028025	4.7564	0.005011	7.4166	0.0078135	1053.5193609623093	18.7	0.14398	18.7	18.676	18.82	0	180	43	1.5121819	0.024819255	1.5121819	306.81247	0	5.0357056						121	7	3	NaN	NaN	NaN	0.58159	1	10730	10730		6.2502	0.15988	1	8350.8			13298	270;7190	7644	7808	10546	10546					-0.01683958094031368
LDPISLLLP	9	Unmodified	_LDPISLLLP_					0	0	0			REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.6026602008002	1	980.60266	979.595384	0.8919	0.0008746	1.2712	0.0012465	2.1631	0.0021211	980.6046174066101	35.217	0.048252	35.217	35.192	35.241	0	192	52	1.5050892	0.030152082	1.5050892	305.66733	0	6.1235657						72	3	2	NaN	NaN	NaN	0.55027	1	7884	7884		7.5404	2.6306	1	5113.1	+		13299	12004	7645	7809	10547	10547					0.1047698576824132
LDPISLLLP	9	Unmodified						0	0	0			REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	980.60266	979.595384	0.8919	0.0008746	1.2712	0.0012465	2.1631	0.0021211	980.6046174066101	35.217	0.048252	35.217	35.192	35.241	0	192	52	1.5050892	0.030152082	1.5050892	305.66733		6.1235657	0.012793	0.00045885	-0.00012701	NaN	7.5404	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5113.1	+		13300	12004	7645	7809							0.1047698576824132
LDPISLLLP	9	Unmodified						0	0	0			REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	REV__ENST00000394945.5_1_5:136314178-136314286:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	980.60266	979.595384	1.6494	0.0016174	0.32644	0.00032011	1.9758	0.0019375	980.6039121863645	35.191	0.072441	35.191	35.167	35.239	-4.5776E-05	189	58	1.5068626	0.033699393	1.5053432	306.0275		6.843994	-0.012793	-0.00046755	0.00012701	NaN	7.5404	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5493.9	+		13301	12004	7645	7809							0.1047698576824132
LDPNLPETF	9	Unmodified	_LDPNLPETF_					0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.263664625	2	523.263665	1044.51278	1.3262	0.00069396	-2.669	-0.0013966	-1.3428	-0.00070263	523.2626347350005	21.344	0.12019	21.33	21.282	21.402	-0.014006	1311	58	0.83019954	0.035069704	0.8286801	336.91397	0	14.232117						137	6	3	NaN	NaN	NaN	0.18779	1	10183	10183		26.115	3.9886	1	17594	+		13302	11397	7646	7810	10548	10548					-0.0076995603058094275
LDPNLPETF	9	Unmodified						0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.263665	1044.51278	1.3262	0.00069396	-2.669	-0.0013966	-1.3428	-0.00070263	523.2626347350005	21.344	0.12019	21.33	21.282	21.402	-0.014006	1311	58	0.83019954	0.035069704	0.8286801	336.91397		14.232117	-0.0069515	-0.0010208	0.00016327	NaN	26.115	137	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17594	+		13303	11397	7646	7810							-0.0076995603058094275
LDPPTQPP	8	Unmodified	_LDPPTQPP_					0	0	0			REV__ENST00000585260.5_1_17:8783958-8784126:-|nuORF	REV__ENST00000585260.5_1_17:8783958-8784126:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.4461595588001	1	864.44616	863.438883	1.2238	0.0010579	3.878	0.0033523	5.1018	0.0044103	864.4491099480346	31.115	0.16894	31.115	31.066	31.235	0	417	103	1.3715409	0.060822487	1.3715409	279.0644	0	12.375427						470	8	4	NaN	NaN	NaN	0.49126	1	5576	5576		31.561	0	1	77805	+		13304	9827	7647	7811	10549	10549					0.0017012059777243849
LDPPTQPP	8	Unmodified						0	0	0			REV__ENST00000585260.5_1_17:8783958-8784126:-|nuORF	REV__ENST00000585260.5_1_17:8783958-8784126:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	864.44616	863.438883	1.2238	0.0010579	3.878	0.0033523	5.1018	0.0044103	864.4491099480346	31.115	0.16894	31.115	31.066	31.235	0	417	103	1.3715409	0.060822487	1.3715409	279.0644		12.375427	0.0030384	-6.5421E-05	0.00075972	NaN	31.561	470	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77805	+		13305	9827	7647	7811							0.0017012059777243849
LDPSRNPD	8	Unmodified	_LDPSRNPD_					0	0	0		ENSG00000118156|ENST00000391901|ZNF541;nc|ENSG00000118156|Q9H0D2-2|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.22233112655	2	457.222331	912.430109	0.75516	0.00034528	-6.3784	-0.0029163	-5.6232	-0.002571	457.2197617358756	30.004	0.19304	29.997	29.901	30.094	-0.0064106	1344	88	0.8098828	0.053573847	0.8083634	329.28723	0	21.78238						256	9	2	NaN	NaN	NaN	0.79607	1	6150	6150		9.746	0.62279	1	22818			13306	2165	7648	7812	10550	10550					-0.0296085303871223
LDPVDDIL	8	Unmodified	_LDPVDDIL_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.4720399583001	1	899.47204	898.464763	1.6963	0.0015258	-3.0362	-0.002731	-1.3398	-0.0012052	899.4688292580092	29.232	0.48268	29.232	29.015	29.498	0	357	88	1.407258	0.05175948	1.407258	286.15665	0	10.524933						570	21	3	NaN	NaN	NaN	0.39717	1	6038	6038		36.586	9.8549	1	90938	+		13307	13570	7649	7813	10551	10551					0.01146970049387619
LDPVDDIL	8	Unmodified	_LDPVDDIL_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4720399583001	1	899.47204	898.464763	1.4593	0.0013126	-0.37547	-0.00033772	1.0838	0.00097488	899.4711467927947	29.762	0.2654	29.755	29.683	29.948	-0.0070667	351	97	1.4108255	0.057104826	1.409306	286.88208	0	11.611877						511	12	3	NaN	NaN	NaN	0.16485	1	5927	5927		52.758	5.7181	1	121700	+		13308	13570	7649	7813	10552	10552					0.01146970049387619
LDPVDDIL	8	Unmodified						0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	899.47204	898.464763	1.6963	0.0015258	-3.0362	-0.002731	-1.3398	-0.0012052	899.4688292580092	29.232	0.48268	29.232	29.015	29.498	0	357	88	1.407258	0.05175948	1.407258	286.15665		10.524933	0.0042402	0.00065689	0.00075972	NaN	36.586	570	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90938	+		13309	13570	7649	7813							0.01146970049387619
LDRCKVLA	8	Unmodified	_LDRCKVLA_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.26548741995	2	459.265487	916.516422	1.1541	0.00053005	-2.7145	-0.0012467	-1.5604	-0.00071662	459.2636111597425	19.444	0.072025	19.444	19.396	19.468	0	1383	37	0.7858409	0.02220571	0.7858409	319.491	0	9.027954						58	4	2	NaN	NaN	NaN	0.79607	1	6354	6354		9.746	0.62279	1	5240.4	+		13310	8542	7650	7814	10553	10553					0.054824352622858896
LDRRELHLLEA	11	Unmodified	_LDRRELHLLEA_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.59300897950015	3	455.593009	1363.7572	0.82968	0.000378	-9.3945	-0.0042801	-8.5649	-0.0039021	455.92336251932215	21.079	0.072243	21.079	21.055	21.127	0	1440	61	0.7506418	0.037081838	0.7506418	455.5437	0	22.503937						109	4	3	NaN	NaN	NaN	0.70255	1	19733	19733		7.2894	1.5922	1	7485.3	+		13311	8890	7651	7815	10554	10554					0.08986922783265072
LDRRELHLLEA	11	Unmodified						0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	455.593009	1363.7572	0.82968	0.000378	-9.3945	-0.0042801	-8.5649	-0.0039021	455.92336251932215	21.079	0.072243	21.079	21.055	21.127	0	1440	61	0.7506418	0.037081838	0.7506418	455.5437		22.503937	-0.065387	0.0007838	-0.00016748	NaN	7.2894	109	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7485.3	+		13312	8890	7651	7815							0.08986922783265072
LDRRELHLLEA	11	Unmodified						0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	455.593009	1363.7572	1.4745	0.00067177	-10.652	-0.0048528	-9.1772	-0.0041811	455.58799240435553	21.224	0.024137	21.21	21.186	21.21	-0.014004	1437	40	0.7524962	0.024104536	0.75097674	456.6691		14.628357	0.065387	-0.00093441	0.00016748	NaN	7.2894	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4397.6	+		13313	8890	7651	7815							0.08986922783265072
LDSDWPHADT	10	Unmodified	_LDSDWPHADT_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7489100178	2	578.74891	1155.48327	2.2501	0.0013023	4.6365	0.0026834	6.8866	0.0039856	578.7536634112928	18.197	0.14389	18.197	18.125	18.268	0	1212	70	0.8910048	0.042292476	0.8910048	361.13794	0	17.141785						139	7	2	NaN	NaN	NaN	0.70677	1	14995	14995		7.5876	1.1577	1	17321			13314	6168	7652	7816	10555	10555					-0.08825520046730162
LDSKSSVG	8	Unmodified	_LDSKSSVG_					0	0	0			REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	792.4097740525002	1	792.409774	791.402498	1.5571	0.0012339	0.52115	0.00041297	2.0782	0.0016468	792.4105871825411	28.773	0.096529	28.765	28.716	28.813	-0.0083504	504	52	1.3196158	0.030494094	1.3180964	268.88214	0	6.2134094						101	5	2	NaN	NaN	NaN	0.80692	1	4551	4551		8.2903	0	1	7217.3	+		13315	13483	7653	7817	10556	10556					-0.001547562989344442
LDSKSSVG	8	Unmodified						0	0	0			REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	792.409774	791.402498	1.7629	0.0013969	3.4581	0.0027403	5.221	0.0041372	792.4125383714309	28.774	0.072365	28.774	28.75	28.822	0	507	55	1.3178225	0.032289624	1.3178225	268.51672		6.5792236	0.0045534	0.0011265	-0.00013697	NaN	8.2903	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6265.7	+		13316	13483	7653	7817							-0.001547562989344442
LDSKSSVG	8	Unmodified						0	0	0			REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	REV__tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	792.409774	791.402498	1.5571	0.0012339	0.52115	0.00041297	2.0782	0.0016468	792.4105871825411	28.773	0.096529	28.765	28.716	28.813	-0.0083504	504	52	1.3196158	0.030494094	1.3180964	268.88214		6.2134094	-0.0045534	-0.0012008	0.00013697	NaN	8.2903	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7217.3	+		13317	13483	7653	7817							-0.001547562989344442
LDSTIHGEHTD	11	Unmodified	_LDSTIHGEHTD_					0	0	0			REV__ENSG00000071553|ENST00000369762|ATP6AP1	REV__ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.7781987735001	2	612.778199	1223.54184	1.3119	0.0008039	1.5836	0.00097038	2.8955	0.0017743	612.7802420319039	26.336	0.26541	26.324	26.276	26.542	-0.011137	1146	103	0.93142134	0.062414765	0.9299019	377.27164	0	25.281097						622	12	6	NaN	NaN	NaN	0.65577	1	16366	16366		10.36	0.61416	1	131690	+		13318	8580	7654	7818	10557	10557					-0.06098463472221738
LDSVPFSPLL	10	Unmodified	_LDSVPFSPLL_					0	0	0		ENST00000256367.2_1_14:71137928-71138198:+|nuORF	ENST00000256367.2_1_14:71137928-71138198:+|nuORF	ENST00000256367.2_1_14:71137928-71138198:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.3053324744501	2	544.305332	1086.59611	1.0008	0.00054472	0.70499	0.00038373	1.7058	0.00092845	544.306264374133	32.682	0.096535	32.679	32.631	32.727	-0.0031052	1248	43	0.8689189	0.025780857	0.86739945	352.44943	0	10.457153						132	5	3	NaN	NaN	NaN	0.29898	1	11940	11940		27.789	5.9538	1	17169			13319	6288	7655	7819	10558	10558					0.056277804172850665
LDTGPDGWRGD	11	Unmodified	_LDTGPDGWRGD_					0	0	0			REV__ENST00000487081.1_1_X:46322687-46322732:+|nuORF	REV__ENST00000487081.1_1_X:46322687-46322732:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	396.8475148803333	3	396.847515	1187.52072	1.6017	0.00063561	2.1033	0.00083468	3.7049	0.0014703	396.8481538978152	36.035	0.096451	36.036	35.988	36.084	0.0011024	1503	37	0.711653	0.022304714	0.71013355	432.524	0	13.556213						82	5	3	NaN	NaN	NaN	0.75376	1	15460	15460		1.5256	0	1	4540.4	+		13320	11640	7656	7820	10559	10559					-0.06554428781100796
LDTLTQVPV	9	Unmodified	_LDTLTQVPV_					0	0	0			REV__ENSG00000131374|ENST00000696125|TBC1D5	REV__ENSG00000131374|ENST00000696125|TBC1D5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.28185737815005	2	493.281857	984.549162	0.59741	0.00029469	0.041179	2.0313E-05	0.63859	0.00031501	493.28174903141	20.718	0.1446	20.704	20.656	20.801	-0.014086	1326	49	0.8209676	0.029549956	0.81944823	333.4313	0	12.001556						131	7	2	NaN	NaN	NaN	0.11656	1	7871	7871		33.425	4.5297	1	32516	+		13321	9514	7657	7821	10560	10560					0.056269208661547054
LDTSEVVF	8	Unmodified	_LDTSEVVF_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.4563898941001	1	909.45639	908.449113	1.9053	0.0017328	0.025318	2.3026E-05	1.9306	0.0017558	909.4559651576645	26.601	0.096571	26.601	26.577	26.674	0	366	61	1.4019053	0.03569424	1.4019053	285.02094	0	7.2569885						104	5	2	NaN	NaN	NaN	0.30832	1	6206	6206		41.46	5.4237	1	9882.4			13322	5132	7658	7822	10561	10561					-0.008773164676540546
LDTSEVVF	8	Unmodified	_LDTSEVVF_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.4563898941001	1	909.45639	908.449113	1.6925	0.0015393	0.16403	0.00014918	1.8566	0.0016885	909.4573139946814	26.601	0.0965	26.59	26.566	26.663	-0.010645	363	58	1.4036897	0.033907652	1.4021703	285.38373	0	6.8937683						122	5	3	NaN	NaN	NaN	0.54545	1	6089	6089		28.667	10.886	1	9747.1			13323	5132	7658	7822	10562	10562					-0.008773164676540546
LDTTKGGG	8	Unmodified	_LDTTKGGG_					0	0	0		ENST00000301159.13_1_19:36239486-36239537:+|nuORF	ENST00000301159.13_1_19:36239486-36239537:+|nuORF	ENST00000301159.13_1_19:36239486-36239537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.3835593020002	1	748.383559	747.376283	1.2323	0.00092221	2.3059	0.0017257	3.5381	0.0026479	748.3858960734717	30.341	0.21715	30.335	30.263	30.48	-0.0064106	570	70	1.2801172	0.041358113	1.2785977	261.0958	0	8.435486						161	10	2	NaN	NaN	NaN	0.77489	1	3924	3924		12.588	6.4976	1	13106			13324	6411	7659	7823	10563	10563					-0.007510254704129693
LDTTKGGG	8	Unmodified						0	0	0		ENST00000301159.13_1_19:36239486-36239537:+|nuORF	ENST00000301159.13_1_19:36239486-36239537:+|nuORF	ENST00000301159.13_1_19:36239486-36239537:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	748.383559	747.376283	1.5055	0.0011267	4.0229	0.0030107	5.5284	0.0041374	748.3872773424577	30.342	0.072395	30.342	30.294	30.366	0	570	79	1.2801172	0.046760082	1.2801172	261.0958		9.537308	0.0036985	0.0005609	0.00075972	NaN	12.588	109	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9020			13325	6411	7659	7823							-0.007510254704129693
LDVAGGHN	8	Unmodified	_LDVAGGHN_					0	0	0			REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF	REV__ENST00000607283.5_1_3:53077257-53126395:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.3791426261	1	782.379143	781.371866	1.6943	0.0013256	-4.1866	-0.0032755	-2.4923	-0.0019499	782.375851160324	23.971	0.09651	23.971	23.923	24.019	0	495	88	1.3249949	0.052035928	1.3249949	270.03726	0	10.605072						134	5	2	NaN	NaN	NaN	0.80071	1	4505	4505		9.1232	0	1	8957.2	+		13326	12981	7660	7824	10564	10564					-0.027564898933405857
LDVGENVM	8	Unmodified	_LDVGENVM_					0	0	0		ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.4131448709002	1	876.413145	875.405868	0.83675	0.00073334	-0.11993	-0.00010511	0.71682	0.00062823	876.4130584569517	33.213	0.096539	33.21	33.186	33.283	-0.0024757	402	43	1.3804773	0.025017858	1.3789579	280.82248	0	5.0892334						81	5	2	NaN	NaN	NaN	0.82797	1	5604	5604		5.4659	1.0528	1	7237.7			13327	5245	7661	7825	10565	10565					-0.03681829516585822
LDVGKDEPL	9	Unmodified	_LDVGKDEPL_					0	0	0			REV__chr5:177301807-177301935|205|19.32|0.0|20.88|-|2|RAB24,None|1	REV__chr5:177301807-177301935|205|19.32|0.0|20.88|-|2|RAB24,None|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.263664625	2	493.263665	984.512776	1.0001	0.00049334	-0.53887	-0.00026581	0.46127	0.00022753	493.2635907803257	19.996	0.12035	19.982	19.958	20.078	-0.014141	1323	58	0.8228144	0.035092473	0.82129496	334.18155	0	14.2526245						167	6	3	NaN	NaN	NaN	0.064504	1	7860	7860		40.957	0.951	1	25395	+		13328	8232	7662	7826	10566	10566					0.01990043969431099
LDVGYEEEL	9	Unmodified	_LDVGYEEEL_					0	0	0		ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENST00000534547.1_1_11:130165680-130166253:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7505870395	2	533.750587	1065.48662	1.8483	0.00098652	0.44435	0.00023717	2.2926	0.0012237	533.7504890140195	23.875	0.12048	23.875	23.827	23.947	0	1302	49	0.8357362	0.029530823	0.8357362	339.074	0	11.981232						114	6	2	NaN	NaN	NaN	0.55027	1	11357	11357		7.5404	0.67717	1	9619.5			13329	7464	7663	7827	10567	10567					-0.043502699927103095
LDVGYEEEL	9	Unmodified						0	0	0		ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENST00000534547.1_1_11:130165680-130166253:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	533.750587	1065.48662	1.4359	0.0007664	0.9915	0.00052921	2.4274	0.0012956	533.7512396040863	23.875	0.072319	23.861	23.837	23.91	-0.013048	1305	52	0.83389086	0.031374753	0.8323714	338.32532		12.72934	-0.0066331	0.00033066	-0.0016824	NaN	7.5404	84	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6355.9			13330	7464	7663	7827							-0.043502699927103095
LDVSDLESV	9	Unmodified	_LDVSDLESV_					0	0	0		nc|ENSG00000172830|Q8TE77-2|SSH3;SSH3|p.H488Afs*5|1|0.38|ENSG00000172830|chr11:67310115-67310116|-/A|frameshift_variant;nc|ENSG00000172830|Q8TE77-3|SSH3;ENSG00000172830|ENST00000308127|SSH3	nc|ENSG00000172830|Q8TE77-2|SSH3	nc|ENSG00000172830|Q8TE77-2|SSH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4833329261002	1	976.483333	975.476056	1.5651	0.0015283	-1.951	-0.0019052	-0.3859	-0.00037683	976.4806464275451	24.526	0.14478	24.514	24.465	24.61	-0.012392	303	73	1.4393384	0.042723894	1.437819	292.33118	0	8.677277						230	7	3	NaN	NaN	NaN	0.023828	1	7597	7597		67.154	11.661	1	32607			13331	4858	7664	7828	10568	10568					-0.012662526471217461
LDVSFAGFV	9	Unmodified	_LDVSFAGFV_					0	0	0			REV__ENST00000512045.5_1_5:68603732-68603849:-|nuORF	REV__ENST00000512045.5_1_5:68603732-68603849:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.4931097514002	1	954.49311	953.485833	1.6405	0.0015658	0.23293	0.00022233	1.8734	0.0017881	954.4944519111469	37.022	0.1202	37.024	36.976	37.096	0.0022507	246	37	1.4731345	0.021323442	1.4716152	299.29132	0	4.332184						80	6	2	NaN	NaN	NaN	0.20577	1	7023	7023		24.961	1.6266	1	4838	+		13332	12561	7665	7829	10569	10569					0.007229801489188503
LDWSWLLD	8	Unmodified	_LDWSWLLD_					0	0	0		EPHA3|p.P348L|1|0.25|ENSG00000044524|chr3:89341827-89341827|C/T|missense_variant	EPHA3|p.P348L|1|0.25|ENSG00000044524|chr3:89341827-89341827|C/T|missense_variant	EPHA3|p.P348L|1|0.25|ENSG00000044524|chr3:89341827-89341827|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2609249708	2	524.260925	1046.5073	1.1522	0.00060406	-10.878	-0.0057031	-9.7261	-0.005099	524.254937236804	27.302	0.12064	27.302	27.229	27.35	0	1275	49	0.85233563	0.029498875	0.85233563	345.88876	0	11.971008						90	6	2	NaN	NaN	NaN	0.77489	1	10474	10474		12.588	1.4175	1	8277.6			13333	7795	7666	7830	10570	10570					-0.014096348223802124
LDYSSSVLF	9	Unmodified	_LDYSSSVLF_					0	0	0			REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5091537460999	1	1030.50915	1029.50188	0.89091	0.00091809	3.7304	0.0038442	4.6213	0.0047623	1030.5111233242337	31.307	0.14475	31.302	31.277	31.422	-0.0050716	153	73	1.5281296	0.042511344	1.5266101	310.13776	0	8.627777						176	7	2	NaN	NaN	NaN	0.094712	1	9555	9555		36.586	16.031	1	30441	+		13334	12370	7667	7831	10571	10571					-0.011693584048543926
LDYSSSVLF	9	Unmodified						0	0	0			REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1030.50915	1029.50188	0.88397	0.00091094	1.6377	0.0016877	2.5217	0.0025986	1030.5103881983814	31.308	0.1448	31.308	31.284	31.428	0	159	94	1.5245869	0.054930925	1.5245869	309.4188		11.148346	0.0030425	-0.0009432	-0.0010116	NaN	36.586	172	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27163	+		13335	12370	7667	7831							-0.011693584048543926
LDYSSSVLF	9	Unmodified						0	0	0			REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1030.50915	1029.50188	0.89091	0.00091809	3.7304	0.0038442	4.6213	0.0047623	1030.5111233242337	31.307	0.14475	31.302	31.277	31.422	-0.0050716	153	73	1.5281296	0.042511344	1.5266101	310.13776		8.627777	-0.0030425	0.0012133	0.0010116	NaN	36.586	176	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30441	+		13336	12370	7667	7831							-0.011693584048543926
LDYYWWLL	8	Unmodified	_LDYYWWLL_					0	0	0		ENSG00000132874|ENST00000255226|SLC14A2	ENSG00000132874|ENST00000255226|SLC14A2	ENSG00000132874|ENST00000255226|SLC14A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.29476778815	2	586.294768	1170.57498	0.9807	0.00057498	-6.4978	-0.0038096	-5.5171	-0.0032347	586.7907386565754	38.035	0.096111	38.035	37.987	38.083	0	1179	55	0.9112251	0.03307879	0.9112251	369.27744	0	13.405334						76	5	2	NaN	NaN	NaN	0.76633	1	15504	15504		13.737	0.274	1	6337.2			13337	2798	7668	7832	10572	10572					-0.0034818489159533783
LEALAEDYAA	10	Unmodified	_LEALAEDYAA_					0	0	0			REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5098820275998	1	1065.50988	1064.50261	1.2722	0.0013555	6.1374	0.0065394	7.4096	0.007895	1065.5172770567387	30.825	0.12064	30.825	30.801	30.922	0	132	64	1.5405227	0.03717172	1.5405227	312.51706	0	7.5408325						142	6	2	NaN	NaN	NaN	0.53991	1	11324	11324		17.799	4.7961	1	16899	+		13338	10963	7669	7833	10573	10573					-0.027065637558052913
LEALAEDYAA	10	Unmodified						0	0	0			REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1065.50988	1064.50261	1.2722	0.0013555	6.1374	0.0065394	7.4096	0.007895	1065.5172770567387	30.825	0.12064	30.825	30.801	30.922	0	132	64	1.5405227	0.03717172	1.5405227	312.51706		7.5408325	0	0	0	NaN	17.799	142	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16899	+		13339	10963	7669	7833							-0.027065637558052913
LEAMECAFHL	10	Unmodified	_LEAMECAFHL_					0	0	0		ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2648271054501	2	582.264827	1162.5151	1.5592	0.00090786	-1.3199	-0.00076852	0.2393	0.00013934	582.2645786751362	32.611	0.096558	32.611	32.587	32.683	0	1227	37	0.88180584	0.022081137	0.88180584	357.384	0	8.949188						78	5	2	NaN	NaN	NaN	0.73444	1	15222	15222		5.6942	0.50528	1	7700.7			13340	7091	7670	7834	10574	10574					-0.05965566888767171
LEAPAPGS	8	Unmodified	_LEAPAPGS_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3777456426001	1	741.377746	740.370469	1.9715	0.0014617	5.0568	0.003749	7.0284	0.0052107	741.3813303320036	26.046	0.16896	26.046	25.998	26.167	0	615	61	1.2531329	0.036003947	1.2531329	255.63559	0	7.3447113						240	8	3	NaN	NaN	NaN	0.82797	1	3917	3917		5.4659	0	1	29589			13341	5738	7671	7835	10575	10575					-0.010101239820869523
LEAVGLIAL	9	Unmodified	_LEAVGLIAL_					0	0	0		ENSG00000099785|ENST00000215555|MARCHF2;ENSG00000173926|ENST00000308660|MARCHF3	ENSG00000099785|ENST00000215555|MARCHF2	ENSG00000099785|ENST00000215555|MARCHF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5607953861	1	898.560795	897.553519	1.0712	0.00096254	-0.38141	-0.00034272	0.68979	0.00061982	898.5602518776655	30.946	0.12066	30.946	30.922	31.042	0	327	73	1.425088	0.042769313	1.425088	289.78668	0	8.696991						170	6	2	NaN	NaN	NaN	0.094712	1	6030	6030		36.586	0	1	22237			13342	1162	7672	7836	10576	10576					0.10064430079705744
LEAVMKSCP	9	Unmodified	_LEAVMKSCP_					0	0	0			REV__ENST00000262544.6_1_20:18488293-18488443:+|nuORF	REV__ENST00000262544.6_1_20:18488293-18488443:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4794502971001	1	977.47945	976.472174	1.45	0.0014173	0.9912	0.00096888	2.4412	0.0023862	977.4803686557505	32.875	0.21703	32.872	32.824	33.041	-0.0031052	243	79	1.4749115	0.04620564	1.473392	299.55185	0	9.384277						306	10	4	NaN	NaN	NaN	0.31737	1	7632	7632		17.799	3.7574	1	56410	+		13343	11553	7673	7837	10577	10577					-0.017003369461917828
LEAVSGGR	8	Unmodified	_LEAVSGGR_					0	0	0		ENST00000588915.1_1_17:57784907-57785009:+|nuORF	ENST00000588915.1_1_17:57784907-57785009:+|nuORF	ENST00000588915.1_1_17:57784907-57785009:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4260928187002	1	788.426093	787.418816	2.3592	0.00186	-6.5286	-0.0051473	-4.1694	-0.0032873	788.4207538984184	23.392	0.096525	23.379	23.355	23.451	-0.013296	519	43	1.310647	0.025122166	1.3091276	267.07773	0	5.119293						83	5	2	NaN	NaN	NaN	0.78264	1	4499	4499		11.548	3.2582	1	5777.5			13344	7718	7674	7838	10578	10578					0.01660369657827232
LECGLLVM	8	Unmodified	_LECGLLVM_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1	REV__nc|ENSG00000141458|O15118-2|NPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4521729141001	1	877.452173	876.444896	0.82724	0.00072586	-0.74412	-0.00065293	0.083116	7.2931E-05	877.450886667201	31.477	0.096523	31.477	31.452	31.549	0	348	55	1.412609	0.03210771	1.412609	287.35358	0	6.531372						129	5	3	NaN	NaN	NaN	0.65075	1	5753	5753		22.126	0	1	11603	+		13345	9825	7675	7839	10579	10579					0.0017317951342192828
LECWAWNQ	8	Unmodified	_LECWAWNQ_					0	0	0		ENST00000469135.1_1_1:180945708-180957553:-|nuORF	ENST00000469135.1_1_1:180945708-180957553:-|nuORF	ENST00000469135.1_1_1:180945708-180957553:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.22910191365	2	525.229102	1048.44365	1.8213	0.00095661	-2.3548	-0.0012368	-0.53345	-0.00028019	525.2272358134031	26.07	0.14482	26.07	25.998	26.143	0	1314	73	0.8283535	0.04428661	0.8283535	336.14844	0	17.97165						138	7	2	NaN	NaN	NaN	0.78967	1	10552	10552		10.605	0	1	13213			13346	7136	7676	7840	10580	10580					-0.07863318531144614
LECWAWNQ	8	Unmodified						0	0	0		ENST00000469135.1_1_1:180945708-180957553:-|nuORF	ENST00000469135.1_1_1:180945708-180957553:-|nuORF	ENST00000469135.1_1_1:180945708-180957553:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.229102	1048.44365	1.8969	0.00099631	-0.21165	-0.00011116	1.6853	0.00088514	525.2283887646555	26.046	0.12067	26.035	26.011	26.131	-0.011135	1314	70	0.8283535	0.042448223	0.8268341	336.1484		17.225616	-0.01774	0.0010814	-0.00075972	NaN	10.605	160	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17459			13347	7136	7676	7840							-0.07863318531144614
LEDAVDEW	8	Unmodified	_LEDAVDEW_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4258180472	1	976.425818	975.418542	1.7603	0.0017188	3.5083	0.0034256	5.2685	0.0051443	976.4280221623277	23.971	0.072388	23.971	23.947	24.019	0	318	49	1.4304334	0.028506875	1.4304334	290.52277	0	5.7897644						88	4	2	NaN	NaN	NaN	0.57691	1	7752	7752		26.732	4.8966	1	7618.5			13348	2686	7677	7841	10581	10581					-0.0701509485271572
LEDAVDEW	8	Unmodified						0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	976.425818	975.418542	2.0801	0.0020311	1.9636	0.0019173	4.0437	0.0039484	976.4270636147095	23.995	0.12057	23.982	23.886	24.006	-0.013048	318	40	1.4304334	0.023158073	1.428914	290.5228		4.70343	0.0054345	-0.00079407	-0.00075972	NaN	26.732	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6116.7			13349	2686	7677	7841							-0.0701509485271572
LEDDEEGERGL	11	Unmodified	_LEDDEEGERGL_					0	0	0		IRX2|p.D268_E271del|1|0.11|ENSG00000170561|chr5:2748893-2748904|TCCTCGTCGTCG/-|inframe_deletion	IRX2|p.D268_E271del|1|0.11|ENSG00000170561|chr5:2748893-2748904|TCCTCGTCGTCG/-|inframe_deletion	IRX2|p.D268_E271del|1|0.11|ENSG00000170561|chr5:2748893-2748904|TCCTCGTCGTCG/-|inframe_deletion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2807712522	2	631.280771	1260.54699	1.3331	0.00084156	2.2904	0.0014459	3.6235	0.0022874	631.2817678725929	20.646	0.12044	20.646	20.597	20.718	0	1167	46	0.91857195	0.027543366	0.91857195	371.94513	0	11.152771						101	6	2	NaN	NaN	NaN	0.76654	1	18005	18005		2.5994	0	1	9332.4			13350	7824	7678	7842	10582	10582					-0.07286204400293173
LEDDPLAAF	9	Unmodified	_LEDDPLAAF_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4778536177	1	990.477854	989.470577	1.9869	0.001968	2.9933	0.0029648	4.9803	0.0049329	990.4806384506251	27.639	0.12066	27.639	27.615	27.736	0	228	94	1.4837929	0.055094242	1.4837929	301.30054	0	11.1875						211	6	3	NaN	NaN	NaN	0.094712	1	8183	8183		36.586	2.1477	1	24451			13351	1516	7679	7843	10583	10583					-0.024579314389484352
LEDLPVIIK	9	Unmodified	_LEDLPVIIK_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3235252276	2	520.323525	1038.6325	1.4642	0.00076184	-0.65648	-0.00034158	0.80769	0.00042026	520.323601222218	27.567	0.096539	27.567	27.543	27.639	0	1275	37	0.85233563	0.022124112	0.85233563	345.9228	0	8.9791565						80	5	2	NaN	NaN	NaN	0.35794	1	10167	10167		15.463	1.0377	1	9492.6			13352	3480	7680	7844	10584	10584					0.11472657313993295
LEDPAGTP	8	Unmodified	_LEDPAGTP_					0	0	0		ENSG00000206260|ENST00000383163|PRR23A	ENSG00000206260|ENST00000383163|PRR23A	ENSG00000206260|ENST00000383163|PRR23A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.383224951	1	799.383225	798.375948	2.2924	0.0018325	4.6748	0.003737	6.9672	0.0055694	799.3870230221577	28.146	0.26542	28.146	28.098	28.363	0	498	160	1.3232021	0.09508002	1.3232021	269.5727	0	19.370422						543	12	4	NaN	NaN	NaN	0.76633	1	4731	4731		13.737	0	1	101860			13353	5942	7681	7845	10585	10585					-0.03130445190288356
LEDPFQKHL	9	Unmodified	_LEDPFQKHL_					0	0	0		ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7982059341001	2	563.798206	1125.58186	1.9009	0.0010717	-2.2681	-0.0012787	-0.36721	-0.00020703	563.7965795831766	23.778	0.072275	23.778	23.754	23.827	0	1230	49	0.8799654	0.029451072	0.8799654	356.77527	0	11.940704						142	4	3	NaN	NaN	NaN	0.33629	1	13914	13914		16.584	1.1215	1	22507			13354	2800	7682	7846	10586	10586					0.024091279889944417
LEDPILLLS	9	Unmodified	_LEDPILLLS_					0	0	0		ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5924894450003	1	1012.59249	1011.58521	1.5264	0.0015456	-0.44727	-0.00045291	1.0791	0.0010927	1012.5909667210882	32.418	0.072384	32.418	32.394	32.466	0	165	82	1.5210435	0.047822714	1.5210435	308.77194	0	9.708008						134	4	3	NaN	NaN	NaN	0.043119	1	9062	9062		49.833	8.0484	1	13215			13355	4331	7683	7847	10587	10587					0.07988378043023658
LEDPILLLS	9	Unmodified						0	0	0		ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.59249	1011.58521	1.2054	0.0012205	-1.4548	-0.0014731	-0.24942	-0.00025256	1012.5910095717159	32.417	0.072384	32.414	32.39	32.462	-0.0031052	162	70	1.5228153	0.040733576	1.5212959	309.13162		8.268921	-0.0021038	-0.0004882	0.00012617	NaN	49.833	138	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14278			13356	4331	7683	7847							0.07988378043023658
LEDPNSKMTEI	11	Unmodified	_LEDPNSKMTEI_					0	0	0			REV__ENSG00000089234|ENST00000419234|BRAP	REV__ENSG00000089234|ENST00000419234|BRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.8081103059002	2	638.80811	1275.60167	1.3667	0.00087308	6.5527	0.0041859	7.9194	0.005059	639.313843550562	32.225	0.24131	32.225	32.08	32.321	0	1140	58	0.93509084	0.034861922	0.93509084	378.58545	0	14.11438						210	11	2	NaN	NaN	NaN	0.40559	1	18333	18333		21.85	1.4017	1	20690	+		13357	8715	7684	7848	10588	10588					-0.025109088531962698
LEDPREGLE	9	Unmodified	_LEDPREGLE_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2616532523001	2	529.261653	1056.50875	1.8918	0.0010013	-1.3616	-0.00072065	0.53022	0.00028063	529.2608680352032	17.165	0.19194	17.165	17.117	17.309	0	1284	67	0.8468043	0.0405522	0.8468043	343.6018	0	16.45456						320	9	3	NaN	NaN	NaN	0.2345	1	10934	10934		23.118	2.5621	1	35556	+		13358	9167	7685	7849	10589	10589					-0.01724045524269968
LEDQLVAI	8	Unmodified	_LEDQLVAI_					0	0	0			REV__nc|ENSG00000162591|O75095-2|MEGF6	REV__nc|ENSG00000162591|O75095-2|MEGF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5036744377002	1	900.503674	899.496398	1.6852	0.0015175	0.039013	3.5132E-05	1.7242	0.0015526	900.5035507104869	23.971	0.12063	23.971	23.923	24.044	0	369	64	1.4001206	0.037477016	1.4001206	284.70038	0	7.6205444						205	6	3	NaN	NaN	NaN	0.5868	1	6058	6058		26.115	1.1539	1	22362	+		13359	10243	7686	7850	10590	10590					0.04262962803340997
LEEADYELL	9	Unmodified	_LEEADYELL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7662371037001	2	547.766237	1093.51792	1.6049	0.00087913	-10.789	-0.0059101	-9.1846	-0.005031	547.7604876388012	24.454	0.28956	24.441	24.344	24.634	-0.012749	1284	136	0.8468043	0.08288944	0.8452849	343.45218	0	33.618805						695	13	5	NaN	NaN	NaN	0.17818	1	12217	12217		26.732	0	1	185550			13360	3883;7967	7687	7851	10591	10591					-0.02509696958600216
LEEADYELL	9	Unmodified						0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.766237	1093.51792	1.3848	0.00075853	-12.23	-0.0066991	-10.845	-0.0059405	547.7594602885008	24.454	0.33764	24.454	24.333	24.671	0	1284	130	0.8468043	0.07922262	0.8468043	343.45218		32.13159	0.0065002	-0.00050702	0.00075972	NaN	26.732	671	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194450			13361	3883;7967	7687	7851							-0.02509696958600216
LEEAKDLL	8	Unmodified	_LEEAKDLL_					0	0	0		ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.514239124	1	930.514239	929.506963	2.0626	0.0019192	-7.2197	-0.0067181	-5.1572	-0.0047988	930.5080054425719	28.194	0.048262	28.194	28.17	28.219	0	336	103	1.419741	0.060577154	1.419741	288.54953	0	12.311737						118	3	2	NaN	NaN	NaN	0.43738	1	6596	6596		34.439	2.8777	1	15910			13362	1768	7688	7852	10592	10592					0.039389454577644756
LEEAKDLL	8	Unmodified						0	0	0		ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.514239	929.506963	0.94338	0.00087783	-7.2821	-0.0067761	-6.3388	-0.0058983	930.5077146086039	28.194	0.072456	28.185	28.161	28.233	-0.0089779	336	91	1.419741	0.05343902	1.4182216	288.54953		10.860992	-0.0048716	-3.1481E-05	-0.00075972	NaN	34.439	128	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16446			13363	1768	7688	7852							0.039389454577644756
LEEALAVAF	9	Unmodified	_LEEALAVAF_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5193245019001	1	962.519325	961.512048	0.97774	0.00094109	2.2424	0.0021584	3.2202	0.0030995	962.5216623123521	30.753	0.072416	30.753	30.728	30.801	0	252	55	1.4695803	0.03199196	1.4695803	298.5337	0	6.498932						101	4	2	NaN	NaN	NaN	0.12328	1	7374	7374		32.453	2.8544	1	10475			13364	1506	7689	7853	10593	10593					0.029752493203773156
LEEALAVAF	9	Unmodified	_LEEALAVAF_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5193245019001	1	962.519325	961.512048	1.2443	0.0011976	-0.030423	-2.9283E-05	1.2139	0.0011684	962.5185900180624	30.752	0.096485	30.746	30.698	30.794	-0.0057545	252	64	1.4695803	0.03732586	1.4680609	298.53372	0	7.5824585						110	5	2	NaN	NaN	NaN	0.10956	1	7224	7224		34.439	4.8405	1	10576			13365	1506	7689	7853	10594	10594					0.029752493203773156
LEEAMPCW	8	Unmodified	_LEEAMPCW_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.7066137348	2	489.706614	977.398675	1.2608	0.00061744	-0.90742	-0.00044437	0.35342	0.00017307	489.70641716359427	32.008	0.12066	32.008	32.008	32.128	0	1323	49	0.8228144	0.029549956	0.8228144	334.21506	0	12.002777						95	6	2	NaN	NaN	NaN	0.8439	1	7804	7804		3.1533	0	1	7472			13366	5080	7690	7854	10595	10595					-0.09092885388668037
LEEAPERERLP	11	Unmodified	_LEEAPERERLP_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416436-113416796:+|nuORF	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8542407565501	2	669.854241	1337.69393	1.4754	0.00098831	3.7603	0.0025189	5.2357	0.0035072	669.8572716393153	26.408	0.14479	26.397	26.349	26.493	-0.011137	1125	97	0.9442611	0.058623075	0.94274163	382.10806	0	23.722626						308	7	4	NaN	NaN	NaN	0.50669	1	18509	18509		18.233	1.0351	1	48697			13367	3466	7691	7855	10596	10596					0.038589372753449425
LEEEEEEEDSD	11	Unmodified	_LEEEEEEEDSD_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.5001747379333	3	451.500175	1351.47869	1.3325	0.00060162	-6.5387	-0.0029522	-5.2062	-0.0023506	451.497860379424	28.146	0.072416	28.146	28.146	28.219	0	1395	28	0.7784366	0.016664267	0.7784366	472.4546	0	10.113983						63	4	3	NaN	NaN	NaN	0.77378	1	19554	19554		0.9877	0	1	4734.8			13368	3353	7692	7856	10597	10597					-0.18298538561452915
LEEEGAVIA	9	Unmodified	_LEEEGAVIA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4778536177	1	930.477854	929.470577	1.4162	0.0013178	-0.2238	-0.00020824	1.1924	0.0011095	930.47779816215	23.995	0.28949	23.982	23.91	24.199	-0.013048	333	64	1.4215236	0.037433147	1.4200041	288.91196	0	7.6079407						341	13	4	NaN	NaN	NaN	0.043119	1	6457	6457		49.833	5.5305	1	59688	+		13369	10428	7693	7857	10598	10598					0.003020685610522378
LEEEGAVIA	9	Unmodified						0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.477854	929.470577	1.4162	0.0013178	-0.2238	-0.00020824	1.1924	0.0011095	930.47779816215	23.995	0.28949	23.982	23.91	24.199	-0.013048	333	64	1.4215236	0.037433147	1.4200041	288.91196		7.6079407	-0.0066403	0.00029102	0.00013155	NaN	49.833	341	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59688	+		13370	10428	7693	7857							0.003020685610522378
LEEEVEKRAF	10	Unmodified	_LEEEVEKRAF_					0	0	0		tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.2189487057667	3	417.218949	1248.63502	1.4201	0.0005925	4.1858	0.0017464	5.6059	0.0023389	417.219916728295	14.957	0.12012	14.957	14.909	15.029	0	1446	49	0.7469324	0.029671907	0.7469324	453.711	0	18.023682						93	6	2	NaN	NaN	NaN	0.70677	1	17743	17743		3.9087	0	1	7483.5			13371	13825	7694	7858	10599	10599					0.02064460981000593
LEEFKWEFLK	10	Unmodified	_LEEFKWEFLK_					0	0	0			REV__tr|U7STH0|U7STH0_FUSNUYgjP-likemetallopeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01053PE=4SV=1	REV__tr|U7STH0|U7STH0_FUSNUYgjP-likemetallopeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01053PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.8635458451	2	684.863546	1367.71254	1.5265	0.0010455	-5.6599	-0.0038763	-4.1334	-0.0028308	685.3608256824458	26.915	0.024137	26.915	26.915	26.94	0	1074	58	0.9754029	0.0347718	0.9754029	394.62146	0	14.0677185						58	2	2	NaN	NaN	NaN	0.70677	1	19778	19778		7.5876	0	1	7647.2	+		13372	13493	7695	7859	10600	10600					0.043390989171712135
LEEGDQIL	8	Unmodified	_LEEGDQIL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4622035535002	1	916.462204	915.454927	2.0132	0.001845	-1.116	-0.0010228	0.89717	0.00082222	916.4604001698591	25.37	0.072376	25.358	25.334	25.407	-0.012011	369	55	1.4001206	0.032128215	1.3986012	284.62558	0	6.53125						111	4	3	NaN	NaN	NaN	0.43738	1	6210	6210		34.439	0	1	10063			13373	1461	7696	7860	10601	10601					-0.006182179559800716
LEEGDQIL	8	Unmodified						0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	916.462204	915.454927	1.9321	0.0017707	-0.78746	-0.00072168	1.1446	0.001049	916.4612671552843	25.371	0.096533	25.371	25.346	25.443	0	369	52	1.4001206	0.030338526	1.4001206	284.62558		6.167389	0.0061304	0.00012023	0.00075972	NaN	34.439	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10500			13374	1461	7696	7860							-0.006182179559800716
LEEGLHNQI	9	Unmodified	_LEEGLHNQI_					0	0	0			REV__ENST00000478337.1_1_22:41980283-41980484:-|nuORF	REV__ENST00000478337.1_1_22:41980283-41980484:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7721881488501	2	526.772188	1051.52982	0.90886	0.00047876	0.09579	5.0459E-05	1.0046	0.00052922	526.7724113389654	29.135	0.28959	29.127	29.007	29.296	-0.0077229	1278	55	0.85049206	0.03317547	0.8489726	345.11917	0	13.462219						169	13	2	NaN	NaN	NaN	0.14787	1	10475	10475		28.896	4.3336	1	18238	+		13375	8817	7697	7861	10602	10602					0.006119645752505676
LEEGLHNQI	9	Unmodified						0	0	0			REV__ENST00000478337.1_1_22:41980283-41980484:-|nuORF	REV__ENST00000478337.1_1_22:41980283-41980484:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.772188	1051.52982	0.90886	0.00047876	0.09579	5.0459E-05	1.0046	0.00052922	526.7724113389654	29.135	0.28959	29.127	29.007	29.296	-0.0077229	1278	55	0.85049206	0.03317547	0.8489726	345.11917		13.462219	-0.0042575	7.8257E-05	-0.00075972	NaN	28.896	169	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18238	+		13376	8817	7697	7861							0.006119645752505676
LEEGTYQKLL	10	Unmodified	_LEEGTYQKLL_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3242535091001	2	597.324254	1192.63395	1.4513	0.00086688	-6.1321	-0.0036628	-4.6808	-0.002796	597.8226226827434	25.226	0.072401	25.226	25.226	25.298	0	1161	61	0.9222442	0.036726475	0.9222442	373.66245	0	14.88031						129	4	3	NaN	NaN	NaN	0.60686	1	16233	16233		14.425	2.3763	1	18599			13377	5633	7698	7862	10603	10603					0.04534246612115567
LEEHKRKFTEE	11	Unmodified	_LEEHKRKFTEE_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.37279765045	2	723.372798	1444.73104	1.3274	0.00096017	-0.84927	-0.00061434	0.47809	0.00034584	723.3725267414106	28.629	0.21717	28.629	28.556	28.774	0	1026	70	1.0046607	0.042024195	1.0046607	406.2415	0	16.992798						262	10	3	NaN	NaN	NaN	0.63477	1	20359	20359		11.739	3.4613	1	24026	+		13378	10744	7699	7863	10604	10604					0.02646608821078189
LEEHKRKFTEE	11	Unmodified						0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	723.372798	1444.73104	1.3274	0.00096017	-0.84927	-0.00061434	0.47809	0.00034584	723.3725267414106	28.629	0.21717	28.629	28.556	28.774	0	1026	70	1.0046607	0.042024195	1.0046607	406.2415		16.992798	0.0045493	-0.00044426	-0.00015375	NaN	11.739	262	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24026	+		13379	10744	7699	7863							0.02646608821078189
LEEIQFYLI	9	Unmodified	_LEEIQFYLI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3184398497001	2	584.31844	1166.62233	1.4828	0.00086642	-9.847	-0.0057538	-8.3642	-0.0048873	584.3123852546532	30.583	0.6274	30.577	30.336	30.963	-0.0057545	1140	70	0.93509084	0.04220581	0.9335714	378.96408	0	17.104736						638	27	3	NaN	NaN	NaN	0.21199	1	14838	14838		24.562	4.0066	1	213060	+		13380	9503	7700	7864	10605	10605					0.04568049588760914
LEEIVMEQKD	10	Unmodified	_LEEIVMEQKD_					0	0	0		tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3052034762001	2	617.305203	1232.59585	1.283	0.00079202	-3.8549	-0.0023797	-2.5719	-0.0015876	617.3030573235968	24.164	0.12074	24.164	24.092	24.213	0	1167	85	0.91857195	0.051405966	0.91857195	372.03653	0	20.820251						392	6	5	NaN	NaN	NaN	0.44412	1	17336	17336		21.771	3.5376	1	228850			13381	13951	7701	7865	10606	10606					-0.011140073648675752
LEEPMRKP	8	Unmodified	_LEEPMRKP_					0	0	0			REV__ENST00000493787.5_1_10:75056784-75072389:-|nuORF	REV__ENST00000493787.5_1_10:75056784-75072389:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.26822707415005	2	500.268227	998.521901	1.7542	0.00087759	4.7902	0.0023964	6.5445	0.003274	500.2700705348726	22.019	0.19283	22.019	21.946	22.139	0	1308	55	0.83204526	0.03321141	0.83204526	337.86526	0	13.485992						202	9	3	NaN	NaN	NaN	0.69898	1	8528	8528		19.118	2.5342	1	15149	+		13382	10121	7702	7866	10607	10607					0.02258114054120597
LEEQHAQQL	9	Unmodified	_LEEQHAQQL_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2750949785501	2	548.275095	1094.53564	1.1114	0.00060936	-7.2614	-0.0039812	-6.15	-0.0033719	548.2711077688017	32.828	0.31374	32.828	32.78	33.094	0	1248	61	0.8689189	0.03682977	0.8689189	352.41745	0	14.9374695						374	14	5	NaN	NaN	NaN	0.12866	1	12600	12600		31.675	5.8745	1	79375			13383	1448	7703	7867	10608	10608					-0.00784936913078127
LEEQYFEL	8	Unmodified	_LEEQYFEL_					0	0	0		ENST00000583556.1_1_18:18550290-18550455:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1	ENST00000583556.1_1_18:18550290-18550455:-|nuORF	ENST00000583556.1_1_18:18550290-18550455:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5040683682	1	1070.50407	1069.49679	1.0992	0.0011767	0.14241	0.00015245	1.2416	0.0013291	1070.502788510611	29.642	0.21718	29.635	29.538	29.755	-0.0070648	111	112	1.5529068	0.065472364	1.5513873	315.01053	0	13.2812195						511	10	3	NaN	NaN	NaN	0.29743	1	11250	11250		42.318	5.0152	1	92373			13384	724	7704	7868	10609	10609					-0.03517662267472588
LEERIHEEFK	10	Unmodified	_LEERIHEEFK_					0	0	0		nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B;nc|ENSG00000178217|Q5SQS7-3|SH2D4B;nc|ENSG00000178217|Q5SQS7-2|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.34350889475	2	665.343509	1328.67246	2.0035	0.001333	6.3822	0.0042464	8.3858	0.0055794	665.3474194047648	22.814	0.048243	22.814	22.814	22.863	0	1098	31	0.960755	0.018319666	0.960755	388.80954	0	7.413849						59	3	3	NaN	NaN	NaN	0.74182	1	19241	19241		5.1889	0.45981	1	4718.2			13385	5104	7705	7869	10610	10610					0.021275522466112307
LEERIHEEFK	10	Unmodified						0	0	0		nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B;nc|ENSG00000178217|Q5SQS7-3|SH2D4B;nc|ENSG00000178217|Q5SQS7-2|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	665.343509	1328.67246	2.312	0.0015383	5.4666	0.0036372	7.7786	0.0051754	665.3459734439876	22.862	0.024065	22.848	22.824	22.848	-0.01354	1101	34	0.95892316	0.020150542	0.9574037	388.0682		8.154755	0.016973	-0.00071136	-0.0016757	NaN	5.1889	48	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4051.3			13386	5104	7705	7869							0.021275522466112307
LEERRHHRREK	11	Unmodified	_LEERRHHRREK_					0	0	0			REV__nc|ENSG00000102103|O60828-5|PQBP1	REV__nc|ENSG00000102103|O60828-5|PQBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.9538227366667	3	515.953823	1544.83964	1.2912	0.00066619	8.3909	0.0043293	9.6821	0.0049955	516.2918230816716	34.299	0.072372	34.298	34.225	34.298	-0.0012474	1335	52	0.8154261	0.031395137	0.81390667	494.27774	0	19.030426						92	4	2	NaN	NaN	NaN	0.77574	1	19664	19664		0.9877	0.10307	1	5942	+		13387	8878	7706	7870	10611	10611					0.08901257634715876
LEESADIKG	9	Unmodified	_LEESADIKG_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;nc|ENSG00000084093|Q13127-2|REST;nc|ENSG00000084093|Q13127-3|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.4836672771002	1	961.483667	960.476391	1.8265	0.0017561	2.5393	0.0024415	4.3658	0.0041976	961.4862121802387	29.4	0.74796	29.393	29.248	29.996	-0.0077209	333	196	1.4215236	0.11574173	1.4200041	288.77576	0	23.51236						1449	32	2	NaN	NaN	NaN	0.10956	1	7201	7201		34.439	2.8777	1	528100			13388	957	7707	7871	10612	10612					-0.005428329272717747
LEFCEPRIKEP	11	Unmodified	_LEFCEPRIKEP_					0	0	0			REV__RPS6KB1-VMP1|10|fusion	REV__RPS6KB1-VMP1|10|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8501125063501	2	680.850113	1359.68567	1.6513	0.0011243	-9.4924	-0.0064629	-7.8411	-0.0053386	680.843870730964	23.199	0.12065	23.186	23.162	23.283	-0.013294	1116	58	0.94976085	0.034831822	0.9482414	384.27008	0	14.092834						180	6	3	NaN	NaN	NaN	0.66717	1	18775	18775		9.6116	1.3341	1	28532	+		13389	13307	7708	7872	10613	10613					0.020216670343643273
LEFCEPRIKEP	11	Unmodified						0	0	0			REV__RPS6KB1-VMP1|10|fusion	REV__RPS6KB1-VMP1|10|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	680.850113	1359.68567	1.6513	0.0011243	-9.4924	-0.0064629	-7.8411	-0.0053386	680.843870730964	23.199	0.12065	23.186	23.162	23.283	-0.013294	1116	58	0.94976085	0.034831822	0.9482414	384.27008		14.092834	0.0051102	0.00032533	-0.0016761	NaN	9.6116	180	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28532	+		13390	13307	7708	7872							0.020216670343643273
LEFERRLSQFV	11	Unmodified	_LEFERRLSQFV_					0	0	0			REV__nc|ENSG00000119321|Q5T1M5-2|FKBP15	REV__nc|ENSG00000119321|Q5T1M5-2|FKBP15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.2612593218	3	475.261259	1422.76195	1.3287	0.00063147	3.075	0.0014614	4.4036	0.0020929	475.262989980374	19.539	0.048176	19.524	19.476	19.524	-0.014143	1386	34	0.78399014	0.020360768	0.7824707	475.58408	0	12.351257						41	3	2	NaN	NaN	NaN	0.73894	1	19281	19281		4.9007	1.5963	1	5010.1	+		13391	9284	7709	7873	10614	10614					0.06747806925977784
LEFFDFSYD	9	Unmodified	_LEFFDFSYD_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;ENST00000528996.1_1_11:57374185-57382051:+|nuORF	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1182.4989829903	1	1182.49898	1181.49171	1.9586	0.002316	-0.18023	-0.00021312	1.7784	0.0021029	1182.4997448762804	35.048	0.19306	35.048	34.999	35.192	0	159	64	1.5245869	0.037203312	1.5245869	308.8921	0	7.5376587						340	9	4	NaN	NaN	NaN	0.67989	1	15861	15861		0.92586	0.12598	1	40921			13392	3659	7710	7874	10615	10615					-0.09177966130096138
LEGAGEPG	8	Unmodified	_LEGAGEPG_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3413601363002	1	729.34136	728.334084	1.4297	0.0010428	5.4046	0.0039418	6.8343	0.0049845	729.3449227287894	24.767	0.096489	24.755	24.731	24.827	-0.012392	657	40	1.2279087	0.02343893	1.2263893	250.56516	0	4.7828827						103	5	2	NaN	NaN	NaN	0.8439	1	3657	3657		3.1533	0	1	8591.5	+		13393	8349	7711	7875	10616	10616					-0.04095000878794508
LEGDFSTKS	9	Unmodified	_LEGDFSTKS_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.4680172129001	1	983.468017	982.460741	2.2438	0.0022067	2.765	0.0027193	5.0088	0.004926	983.4713335960786	20.381	0.07235	20.367	20.343	20.415	-0.014141	288	52	1.4482387	0.030261159	1.4467193	294.1097	0	6.1454773						67	4	2	NaN	NaN	NaN	0.27608	1	7791	7791		20.449	3.8645	1	4002.4			13394	1881	7712	7876	10617	10617					-0.031191194443181303
LEGELISL	8	Unmodified	_LEGELISL_					0	0	0			REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4927754004001	1	873.492775	872.485499	1.2219	0.0010673	-1.8397	-0.0016069	-0.61779	-0.00053963	873.4908650446077	32.345	0.048294	32.345	32.321	32.37	0	378	46	1.3947657	0.026777864	1.3947657	283.74377	0	5.4475403						73	3	2	NaN	NaN	NaN	0.16485	1	5703	5703		52.758	0	1	5587.9	+		13395	10508	7713	7877	10618	10618					0.04415560429049492
LEGELISL	8	Unmodified						0	0	0			REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	REV__nc|ENSG00000168386|Q4L180-4|FILIP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	873.492775	872.485499	1.2219	0.0010673	-1.8397	-0.0016069	-0.61779	-0.00053963	873.4908650446077	32.345	0.048294	32.345	32.321	32.37	0	378	46	1.3947657	0.026777864	1.3947657	283.74377		5.4475403	0.0024397	-0.0011426	-0.00013287	NaN	52.758	73	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5587.9	+		13396	10508	7713	7877							0.04415560429049492
LEGESCSF	8	Unmodified	_LEGESCSF_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.17874336485	2	436.178743	870.342934	1.6223	0.00070762	-3.9765	-0.0017345	-2.3542	-0.0010268	436.1773553498384	25.853	0.12066	25.853	25.805	25.926	0	1419	55	0.76361835	0.033351958	0.76361835	310.69925	0	13.57019						109	6	3	NaN	NaN	NaN	0.80071	1	5662	5662		9.1232	0.83292	1	10389			13397	3841	7714	7878	10619	10619					-0.0974239530463592
LEGESCSF	8	Unmodified						0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	436.178743	870.342934	1.8718	0.00081642	-2.0374	-0.00088866	-0.16562	-7.2241E-05	436.17805647936837	25.853	0.096542	25.841	25.817	25.914	-0.0116	1419	55	0.76361835	0.03335917	0.7620989	310.69925		13.57312	-0.0059275	0.00071343	-0.00075972	NaN	9.1232	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9637.7			13398	3841	7714	7878							-0.0974239530463592
LEGFGGSG	8	Unmodified	_LEGFGGSG_					0	0	0			REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3307954500002	1	723.330795	722.323519	1.5688	0.0011347	6.3459	0.0045902	7.9147	0.0057249	723.3356617528449	24.237	0.14479	24.237	24.213	24.357	0	609	271	1.2567334	0.16217446	1.2567334	256.48648	0	33.09816						792	7	5	NaN	NaN	NaN	0.54545	1	3637	3637		28.667	0	1	449490	+		13399	12280	7715	7879	10620	10620					-0.04874983533215982
LEGFGGSG	8	Unmodified	_LEGFGGSG_					0	0	0			REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3307954500002	1	723.330795	722.323519	1.6567	0.0011983	7.0552	0.0051033	8.7119	0.0063016	723.3357951459283	28.122	0.048262	28.122	28.122	28.17	0	612	190	1.2549332	0.11335802	1.2549332	256.11908	0	23.135239						287	3	3	NaN	NaN	NaN	0.72043	1	3639	3639		17.78	5.1924	1	51839	+		13400	12280	7715	7879	10621	10621					-0.04874983533215982
LEGFGGSG	8	Unmodified						0	0	0			REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	723.330795	722.323519	1.5688	0.0011347	6.3459	0.0045902	7.9147	0.0057249	723.3356617528449	24.237	0.14479	24.237	24.213	24.357	0	609	271	1.2567334	0.16217446	1.2567334	256.48648		33.09816	0	0	0	NaN	28.667	792	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449490	+		13401	12280	7715	7879							-0.04874983533215982
LEGHPPDAS	9	Unmodified	_LEGHPPDAS_					0	0	0		ENST00000550355.1_1_14:32030735-32137181:+|nuORF	ENST00000550355.1_1_14:32030735-32137181:+|nuORF	ENST00000550355.1_1_14:32030735-32137181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4264867492	1	922.426487	921.41921	1.295	0.0011946	5.8737	0.0054181	7.1687	0.0066126	922.4321452251494	21.416	0.14435	21.402	21.33	21.475	-0.014004	360	55	1.405474	0.032117963	1.4039545	285.6864	0	6.5285034						170	7	3	NaN	NaN	NaN	0.31737	1	6307	6307		17.799	2.6236	1	11505			13402	7540	7716	7880	10622	10622					-0.04464255413006413
LEGLEAEL	8	Unmodified	_LEGLEAEL_					0	0	0			REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4563898941	1	873.45639	872.449113	1.8989	0.0016586	1.5113	0.0013201	3.4103	0.0029787	873.4563613648911	26.746	0.02416	26.735	26.735	26.759	-0.010645	375	37	1.3965509	0.021421194	1.3950315	284.10712	0	4.357788						37	2	2	NaN	NaN	NaN	0.65075	1	5562	5562		22.126	0	1	2385.3	+		13403	11485	7717	7881	10623	10623					0.007786835323258856
LEGLEAEL	8	Unmodified						0	0	0			REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	873.45639	872.449113	1.8989	0.0016586	1.5113	0.0013201	3.4103	0.0029787	873.4563613648911	26.746	0.02416	26.735	26.735	26.759	-0.010645	375	37	1.3965509	0.021421194	1.3950315	284.10712		4.357788	-0.0055074	0.00083008	-0.00075972	NaN	22.126	37	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385.3	+		13404	11485	7717	7881							0.007786835323258856
LEGLVLDVL	9	Unmodified	_LEGLVLDVL_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5819247587	1	970.581925	969.574648	1.3062	0.0012678	-1.2691	-0.0012318	0.03709	3.5999E-05	970.5802314527666	34.951	0.14467	34.951	34.927	35.072	0	222	79	1.4873441	0.04616642	1.4873441	302.1068	0	9.377228						280	7	4	NaN	NaN	NaN	0.0072287	1	7599	7599		98.041	6.6125	1	43463	+	+	13405	8291	7718	7882	10624	10624					0.08864395388559387
LEGLVLDVL	9	Unmodified	_LEGLVLDVL_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5819247587	1	970.581925	969.574648	1.1898	0.0011548	-0.61075	-0.00059278	0.5791	0.00056206	970.5812021434936	34.95	0.16887	34.95	34.901	35.07	-4.5776E-05	219	82	1.4891195	0.04793954	1.4876001	302.4674	0	9.737366						284	8	4	NaN	NaN	NaN	0.025843	1	7459	7459		64.55	0	1	44061	+	+	13406	8291	7718	7882	10625	10625					0.08864395388559387
LEGLVLDVL	9	Unmodified						0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	970.581925	969.574648	1.3062	0.0012678	-1.2691	-0.0012318	0.03709	3.5999E-05	970.5802314527666	34.951	0.14467	34.951	34.927	35.072	0	222	79	1.4873441	0.04616642	1.4873441	302.1068		9.377228	0.00079572	-0.00038311	-0.00012796	NaN	98.041	280	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43463	+	+	13407	8291	7718	7882							0.08864395388559387
LEGLVLDVL	9	Unmodified						0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	970.581925	969.574648	1.1898	0.0011548	-0.61075	-0.00059278	0.5791	0.00056206	970.5812021434936	34.95	0.16887	34.95	34.901	35.07	-4.5776E-05	219	82	1.4891195	0.04793954	1.4876001	302.4674		9.737366	-0.00079572	0.00025587	0.00012796	NaN	98.041	284	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44061	+	+	13408	8291	7718	7882							0.08864395388559387
LEGPDPGS	8	Unmodified	_LEGPDPGS_					0	0	0			REV__ENST00000494080.5_1_11:64109091-64110096:+|nuORF	REV__ENST00000494080.5_1_11:64109091-64110096:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3519248226002	1	771.351925	770.344648	2.087	0.0016098	5.215	0.0040226	7.3021	0.0056325	771.3561341366051	26.312	0.14483	26.312	26.263	26.408	0	546	55	1.294491	0.032327414	1.294491	263.88565	0	6.590027						137	7	2	NaN	NaN	NaN	0.76633	1	4354	4354		13.737	0	1	17888	+		13409	10495	7719	7883	10626	10626					-0.04971018224364343
LEGPNGRKEYP	11	Unmodified	_LEGPNGRKEYP_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.3225764874002	2	630.322576	1258.6306	1.5381	0.00096951	4.5811	0.0028876	6.1193	0.0038571	630.3244472724759	25.177	0.12064	25.165	25.141	25.262	-0.012011	1128	64	0.9424274	0.03851497	0.94090796	381.6109	0	15.595612						154	6	2	NaN	NaN	NaN	0.65815	1	17199	17199		6.9844	0	1	19028			13410	533	7720	7884	10627	10627					0.011629965581050783
LEGQDLLEF	9	Unmodified	_LEGQDLLEF_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2689469681501	2	532.268947	1062.52334	1.8745	0.00099775	-1.5509	-0.00082548	0.32366	0.00017227	532.2678887413559	26.601	0.14482	26.601	26.553	26.698	0	1278	91	0.85049206	0.05534035	0.85049206	345.07303	0	22.4534						275	7	4	NaN	NaN	NaN	0.12328	1	11225	11225		32.453	0.89171	1	37651	+		13411	9905	7721	7885	10628	10628					-0.005419733761300449
LEGQDLLEF	9	Unmodified						0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.268947	1062.52334	1.8745	0.00099775	-1.5509	-0.00082548	0.32366	0.00017227	532.2678887413559	26.601	0.14482	26.601	26.553	26.698	0	1278	91	0.85049206	0.05534035	0.85049206	345.07303		22.4534	-0.13932	0.00055144	0.0035257	NaN	32.453	275	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37651	+		13412	9905	7721	7885							-0.005419733761300449
LEGQDLLEF	9	Unmodified						0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.268947	1062.52334	0.64146	0.00034143	-3.2897	-0.001751	-2.6483	-0.0014096	532.2671049962836	26.891	0.096558	26.88	26.832	26.928	-0.010643	1287	70	0.8449601	0.042402327	0.84344065	342.82852		17.20404	0.13932	-0.0012997	-0.0035257	NaN	32.453	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16953	+		13413	9905	7721	7885							-0.005419733761300449
LEGTGGGK	8	Unmodified	_LEGTGGGK_					0	0	0			REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.3729946157001	1	718.372995	717.365718	1.0146	0.00072883	6.8014	0.004886	7.816	0.0056148	718.3780858032648	26.964	0.26544	26.964	26.915	27.181	0	627	79	1.24593	0.04684007	1.24593	254.3143	0	9.560822						213	12	3	NaN	NaN	NaN	0.80071	1	3552	3552		9.1232	0	1	20856	+		13414	11919	7722	7886	10629	10629					-0.004270081248478164
LEGTGGGK	8	Unmodified						0	0	0			REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	718.372995	717.365718	1.0146	0.00072883	6.8014	0.004886	7.816	0.0056148	718.3780858032648	26.964	0.26544	26.964	26.915	27.181	0	627	79	1.24593	0.04684007	1.24593	254.3143		9.560822	-0.0066031	-5.7151E-05	-0.00014081	NaN	9.1232	213	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20856	+		13415	11919	7722	7886							-0.004270081248478164
LEGTGGGK	8	Unmodified						0	0	0			REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	718.372995	717.365718	0.96977	0.00069665	7.1046	0.0051038	8.0744	0.0058004	718.3769410320906	26.987	0.16898	26.977	26.905	27.074	-0.010126	624	58	1.247731	0.03422022	1.2462115	254.68193		6.984894	0.0066031	0.00016064	0.00014081	NaN	9.1232	227	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22078	+		13416	11919	7722	7886							-0.004270081248478164
LEGVWGGPG	9	Unmodified	_LEGVWGGPG_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.21906015610006	2	436.21906	870.423567	1.2701	0.00055405	-0.90309	-0.00039395	0.36703	0.00016011	436.21816923132985	19.803	0.16837	19.789	19.741	19.909	-0.014141	1383	49	0.7858409	0.029610872	0.7843215	319.74066	0	12.048004						116	8	2	NaN	NaN	NaN	0.62619	1	5526	5526		4.4131	1.2597	1	9847.4			13417	13688	7723	7887	10630	10630					-0.016827461994239457
LEHGQYYF	8	Unmodified	_LEHGQYYF_					0	0	0			REV__ARHGAP10|p.H212Y|1|0.23|ENSG00000071205|chr4:147866748-147866748|C/T|missense_variant	REV__ARHGAP10|p.H212Y|1|0.23|ENSG00000071205|chr4:147866748-147866748|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.74289939315	2	528.742899	1055.47125	1.0216	0.00054016	-4.3815	-0.0023167	-3.3599	-0.0017765	528.7407753701038	22.693	0.1928	22.68	22.655	22.848	-0.01354	1293	43	0.84127116	0.0258255	0.8397517	341.361	0	10.4791565						138	9	2	NaN	NaN	NaN	0.65075	1	10636	10636		22.126	1.5709	1	26248	+		13418	8138	7724	7888	10631	10631					-0.054270919992632116
LEHIFKGG	8	Unmodified	_LEHIFKGG_					0	0	0			REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4937784534002	1	900.493778	899.486502	1.6763	0.0015095	-10.201	-0.0091862	-8.525	-0.0076767	900.4858254651866	28.677	0.096514	28.677	28.629	28.725	0	372	52	1.3983358	0.030344963	1.3983358	284.33755	0	6.1703186						114	5	3	NaN	NaN	NaN	0.80692	1	6056	6056		8.2903	0.74991	1	9432.7	+		13419	11761	7725	7889	10632	10632					0.032738195886281574
LEHIFKGG	8	Unmodified	_LEHIFKGG_					0	0	0			REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4937784534002	1	900.493778	899.486502	1.5649	0.0014092	-11.211	-0.010095	-9.6457	-0.0086859	900.4843577011696	28.701	0.048262	28.692	28.668	28.716	-0.0083504	372	55	1.3983358	0.032124758	1.3968164	284.33755	0	6.532257						83	3	2	NaN	NaN	NaN	0.69898	1	5940	5940		19.118	2.7017	1	7325.3	+		13420	11761	7725	7889	10633	10633					0.032738195886281574
LEHIFKGG	8	Unmodified						0	0	0			REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.493778	899.486502	1.6763	0.0015095	-10.201	-0.0091862	-8.525	-0.0076767	900.4858254651866	28.677	0.096514	28.677	28.629	28.725	0	372	52	1.3983358	0.030344963	1.3983358	284.33755		6.1703186	-0.0075245	0.00051842	0.00075972	NaN	19.118	114	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9432.7	+		13421	11761	7725	7889							0.032738195886281574
LEHIFKGG	8	Unmodified						0	0	0			REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.493778	899.486502	1.5649	0.0014092	-11.211	-0.010095	-9.6457	-0.0086859	900.4843577011696	28.701	0.048262	28.692	28.668	28.716	-0.0083504	372	55	1.3983358	0.032124758	1.3968164	284.33755		6.532257	0.0075245	-0.00039051	-0.00075972	NaN	19.118	83	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7325.3	+		13422	11761	7725	7889							0.032738195886281574
LEHLSLCALL	10	Unmodified	_LEHLSLCALL_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3126345778	2	556.312635	1110.61072	1.7061	0.0009491	-1.5724	-0.00087475	0.13365	7.4352E-05	556.3119599089263	25.564	0.096445	25.564	25.515	25.612	0	1212	70	0.8910048	0.042329073	0.8910048	361.31003	0	17.164795						101	5	2	NaN	NaN	NaN	0.33935	1	13317	13317		26.115	6.9514	1	17142	+		13423	11057	7726	7890	10634	10634					0.05983529293780521
LEHLSLCALL	10	Unmodified						0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.312635	1110.61072	1.7061	0.0009491	-1.5724	-0.00087475	0.13365	7.4352E-05	556.3119599089263	25.564	0.096445	25.564	25.515	25.612	0	1212	70	0.8910048	0.042329073	0.8910048	361.31003		17.164795	-0.0061442	-1.0061E-06	0.0025992	NaN	26.115	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17142	+		13424	11057	7726	7890							0.05983529293780521
LEHLSLCALL	10	Unmodified						0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.312635	1110.61072	1.8711	0.0010409	-1.5707	-0.00087382	0.30041	0.00016712	556.3126801209809	25.588	0.096529	25.576	25.503	25.6	-0.0116	1218	52	0.8873258	0.03126645	0.8858064	359.81815		12.6788025	0.0061442	8.5498E-07	-0.0025992	NaN	26.115	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18214	+		13425	11057	7726	7890							0.05983529293780521
LEIDNSELLLM	11	Oxidation (M)	_LEIDNSELLLM(Oxidation (M))_		LEIDNSELLLM(1)		LEIDNSELLLM(49)	0	0	1		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENST00000476056.5_1_20:43565368-43567380:+|nuORF;ENST00000482486.1_1_20:43566688-43567841:+|nuORF	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3339609156501	2	653.333961	1304.65337	1.4525	0.00094898	3.2619	0.0021311	4.7144	0.0030801	653.3354527850215	19.156	0.047989	19.156	19.132	19.18	0	1113	34	0.9515937	0.02016145	0.9515937	385.175	0	8.160706						62	3	2	NaN	NaN	NaN	0.054678	1	18853	18853		48.65	10.519	1	6828.8			13426	1298	7727	7891	10635	10635		144			0.01322834840698306
LEIDNSELLLM	11	Oxidation (M)	_LEIDNSELLLM(Oxidation (M))_		LEIDNSELLLM(1)		LEIDNSELLLM(61)	0	0	1		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENST00000476056.5_1_20:43565368-43567380:+|nuORF;ENST00000482486.1_1_20:43566688-43567841:+|nuORF	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3339609156501	2	653.333961	1304.65337	1.3128	0.00085769	1.9606	0.0012809	3.2734	0.0021386	653.3350464902411	19.178	0.04808	19.164	19.14	19.188	-0.014141	1113	31	0.9515937	0.018327594	0.95007426	385.17502	0	7.4184265						46	3	2	NaN	NaN	NaN	0.021881	1	18019	18019		61.199	23.968	1	5559.7			13427	1298	7727	7891	10636	10636		144			0.01322834840698306
LEIKNDRGI	9	Unmodified	_LEIKNDRGI_					0	0	0		ENST00000368178.3_1_1:157738776-157739058:-|nuORF	ENST00000368178.3_1_1:157738776-157739058:-|nuORF	ENST00000368178.3_1_1:157738776-157739058:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.30365545275	2	529.303655	1056.59276	0.84687	0.00044825	-4.1701	-0.0022072	-3.3232	-0.001759	529.3014094575383	31.501	0.096523	31.501	31.452	31.549	0	1248	52	0.8689189	0.031313777	0.8689189	352.57474	0	12.705963						128	5	3	NaN	NaN	NaN	0.2961	1	10956	10956		19.164	0	1	12762			13428	6628	7728	7892	10637	10637					0.0667253036326656
LEKDELAL	8	Unmodified	_LEKDELAL_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.514239124	1	930.514239	929.506963	0.94338	0.00087783	-7.2821	-0.0067761	-6.3388	-0.0058983	930.5077146086039	28.194	0.072456	28.185	28.161	28.233	-0.0089779	336	91	1.419741	0.05343902	1.4182216	288.54953	0	10.860992						128	4	2	NaN	NaN	NaN	0.72013	1	6461	6461		17.799	0	1	16446	+		13429	8664	7729	7893	10638	10638					0.039389454577644756
LEKKCWESK	9	Unmodified	_LEKKCWESK_					0	0	0			REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7998913433	2	575.799891	1149.58523	1.0871	0.00062597	-9.8192	-0.0056539	-8.7321	-0.0050279	575.7939278269578	30.028	0.072428	30.021	29.997	30.07	-0.0064106	1194	58	0.902037	0.034941077	0.9005176	365.63168	0	14.162994						95	4	2	NaN	NaN	NaN	0.33629	1	14285	14285		16.584	0	1	7697	+		13430	12967	7730	7894	10639	10639					0.016420547713323685
LEKKCWESK	9	Unmodified						0	0	0			REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.799891	1149.58523	1.8499	0.0010652	-10.833	-0.0062379	-8.9835	-0.0051727	575.7942790557835	29.956	0.12071	29.956	29.956	30.077	0	1197	58	0.9001988	0.034941077	0.9001988	364.88657		14.162994	-0.032532	-0.00063402	-0.00015938	NaN	16.584	159	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14462	+		13431	12967	7730	7894							0.016420547713323685
LEKKCWESK	9	Unmodified						0	0	0			REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.799891	1149.58523	1.0871	0.00062597	-9.8192	-0.0056539	-8.7321	-0.0050279	575.7939278269578	30.028	0.072428	30.021	29.997	30.07	-0.0064106	1194	58	0.902037	0.034941077	0.9005176	365.63168		14.162994	0.032532	0.00053399	0.00015938	NaN	16.584	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7697	+		13432	12967	7730	7894							0.016420547713323685
LEKKQWIT	8	Unmodified	_LEKKQWIT_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENST00000409532.5_2_2:173366626-173368977:+|nuORF	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.3056668254501	2	523.305667	1044.59678	1.3727	0.00071833	-3.324	-0.0017395	-1.9514	-0.0010212	523.303934701808	30.124	0.31372	30.118	29.901	30.214	-0.0064106	1203	178	0.8965218	0.1083141	0.89500237	363.8287	0	43.9563						1022	14	4	NaN	NaN	NaN	0.84562	1	10208	10208		2.1763	0	1	231780			13433	140	7731	7895	10640	10640					0.0762661985700106
LEKSFYQF	8	Unmodified	_LEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2687500029001	2	531.26875	1060.52295	1.8086	0.00096088	-1.2566	-0.00066758	0.55206	0.00029329	531.267516380695	22.26	0.096487	22.26	22.236	22.332	0	1275	49	0.85233563	0.029505253	0.85233563	345.82938	0	11.971558						98	5	2	NaN	NaN	NaN	0.72013	1	11119	11119		17.799	3.374	1	13014			13434	523	7732	7896	10641	10641					-0.004893483053365344
LEKSFYQF	8	Unmodified						0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.26875	1060.52295	0.75658	0.00040195	2.1709	0.0011533	2.9275	0.0015553	531.2689660644374	22.284	0.072344	22.27	22.246	22.318	-0.013731	1272	70	0.854179	0.042416096	0.8526596	346.57727		17.210022	0.0050035	0.0017725	0.00016197	NaN	17.799	123	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12960			13435	523	7732	7896							-0.004893483053365344
LEKVGSIF	8	Unmodified	_LEKVGSIF_					0	0	0		nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7;ENST00000610160.1_1_20:31291624-31315937:-|nuORF	nc|ENSG00000149600|Q86VX2-2|COMMD7	nc|ENSG00000149600|Q86VX2-2|COMMD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.76056083005005	2	446.760561	891.506569	0.93348	0.00041704	-0.049373	-2.2058E-05	0.88411	0.00039499	446.76029606163064	20.983	0.07214	20.983	20.959	21.031	0	1428	34	0.7580582	0.020391703	0.7580582	308.32327	0	8.293854						55	4	2	NaN	NaN	NaN	0.80191	1	5948	5948		8.962	2.0988	1	4578.6			13436	3688	7733	7897	10642	10642					0.05647570528572032
LEKYLLKN	8	Unmodified	_LEKYLLKN_					0	0	0		tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.6088082112002	1	1020.60881	1019.60153	1.6976	0.0017325	-11.309	-0.011542	-9.6109	-0.009809	1020.5972841170944	37.891	0.12018	37.891	37.891	38.011	0	99	46	1.5599792	0.02651465	1.5599792	316.64246	0	5.3819275						99	6	2	NaN	NaN	NaN	0.72013	1	9359	9359		17.799	2.6236	1	10007			13437	13804	7734	7898	10643	10643					0.09251503999769284
LELAADCHL	9	Unmodified	_LELAADCHL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4818931381	1	984.481893	983.474617	1.6307	0.0016054	7.0303	0.0069212	8.661	0.0085266	984.4881876357585	31.863	0.21722	31.863	31.766	31.983	0	276	160	1.4553556	0.09423363	1.4553556	295.55078	0	19.13678						562	10	4	NaN	NaN	NaN	0.12945	1	8003	8003		31.561	2.8945	1	103230			13438	2641	7735	7899	10644	10644					-0.017781652168991968
LELAADCHL	9	Unmodified	_LELAADCHL_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4818931381	1	984.481893	983.474617	1.1297	0.0011122	6.1096	0.0060148	7.2393	0.0071269	984.4879750239218	31.862	0.21717	31.857	31.785	32.002	-0.0044155	273	145	1.4571344	0.08534813	1.4556149	295.91202	0	17.332336						498	10	4	NaN	NaN	NaN	0.12945	1	7828	7828		31.561	2.8945	1	104380			13439	2641	7735	7899	10645	10645					-0.017781652168991968
LELATGPP	8	Unmodified	_LELATGPP_					0	0	0			REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.4403458994002	1	797.440346	796.433069	1.3985	0.0011152	4.9827	0.0039734	6.3812	0.0050887	797.4443758563136	32.876	0.12067	32.876	32.852	32.973	0	462	49	1.3447032	0.028649807	1.3447032	273.96436	0	5.836975						145	6	2	NaN	NaN	NaN	0.79379	1	4713	4713		10.052	0	1	16139	+		13440	13257	7736	7900	10646	10646					0.026710220861104972
LELATGPP	8	Unmodified						0	0	0			REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	797.440346	796.433069	1.3985	0.0011152	4.9827	0.0039734	6.3812	0.0050887	797.4443758563136	32.876	0.12067	32.876	32.852	32.973	0	462	49	1.3447032	0.028649807	1.3447032	273.96436		5.836975	-0.010288	0.00017438	-0.00013554	NaN	10.052	145	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16139	+		13441	13257	7736	7900							0.026710220861104972
LELATGPP	8	Unmodified						0	0	0			REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	797.440346	796.433069	1.2971	0.0010343	4.4968	0.0035859	5.7939	0.0046203	797.4436887780189	32.899	0.14472	32.897	32.849	32.993	-0.0024757	459	46	1.3464937	0.026854873	1.3449743	274.32913		5.4713135	0.010288	-0.00021313	0.00013554	NaN	10.052	163	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15112	+		13442	13257	7736	7900							0.026710220861104972
LELDPLLIS	9	Unmodified	_LELDPLLIS_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5924894450003	1	1012.59249	1011.58521	1.2054	0.0012205	-1.4548	-0.0014731	-0.24942	-0.00025256	1012.5910095717159	32.417	0.072384	32.414	32.39	32.462	-0.0031052	162	70	1.5228153	0.040733576	1.5212959	309.13162	0	8.268921						138	4	3	NaN	NaN	NaN	0.043119	1	8890	8890		49.833	0	1	14278	+		13443	11038	7737	7901	10647	10647					0.07988378043023658
LELGEAIL	8	Unmodified	_LELGEAIL_					0	0	0		ENST00000492092.1_1_22:50644878-50655786:+|nuORF;ENST00000380903.6_1_22:50639465-50655786:+|nuORF;ENSG00000073169|ENST00000380903|SELENOO	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4978607783002	1	857.497861	856.490584	1.0337	0.00088643	-0.21231	-0.00018205	0.82143	0.00070438	857.497418916965	35.094	0.0965	35.094	35.046	35.143	-4.5776E-05	360	55	1.405474	0.032114625	1.4039545	286.00504	0	6.535095						105	5	2	NaN	NaN	NaN	0.67593	1	5359	5359		20.555	0	1	9882.2			13444	808	7738	7902	10648	10648					0.05659864291669692
LELLPLLL	8	Unmodified	_LELLPLLL_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.6175819835001	1	923.617582	922.610306	0.85039	0.00078544	0.85015	0.00078522	1.7005	0.0015707	923.6185976288934	41.28	0.072258	41.288	41.216	41.288	0.0082588	264	73	1.4624695	0.042674065	1.46095	297.26608	0	8.674042						93	4	2	NaN	NaN	NaN	0.35353	1	6337	6337		38.918	0	1	6852.9	+		13445	13093	7739	7903	10649	10649					0.14590477636238575
LELNGAVEPS	10	Unmodified	_LELNGAVEPS_					0	0	0		nc|ENSG00000090372|Q9NRL3-3|STRN4;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-2|STRN4	nc|ENSG00000090372|Q9NRL3-3|STRN4	nc|ENSG00000090372|Q9NRL3-3|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7665714547	2	514.766571	1027.51859	0.99834	0.00051391	6.4958	0.0033438	7.4942	0.0038577	514.7695799082503	34.419	0.072292	34.419	34.37	34.443	-0.00064468	1275	49	0.85233563	0.029492497	0.8508162	345.97168	0	11.971313						103	4	2	NaN	NaN	NaN	0.68732	1	9481	9481		8.9191	2.0559	1	17044			13446	1055	7740	7904	10650	10650					0.005931424811024044
LELPGLDDR	9	Unmodified	_LELPGLDDR_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.5418508579999	1	1027.54185	1026.53457	1.7532	0.0018015	4.7318	0.0048622	6.4851	0.0066637	1027.5491038816747	30.487	0.048231	30.487	30.463	30.511	0	141	46	1.5352125	0.026556969	1.5352125	311.5872	0	5.389984						64	3	2	NaN	NaN	NaN	0.62619	1	9632	9632		4.4131	1.6279	1	6291.3	+		13447	10946	7741	7905	10651	10651					0.022368487179846852
LELPGLDDR	9	Unmodified						0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1027.54185	1026.53457	1.7532	0.0018015	4.7318	0.0048622	6.4851	0.0066637	1027.5491038816747	30.487	0.048231	30.487	30.463	30.511	0	141	46	1.5352125	0.026556969	1.5352125	311.5872		5.389984	0.015437	0.0015825	0.0016449	NaN	4.4131	64	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6291.3	+		13448	10946	7741	7905							0.022368487179846852
LELPGLDDR	9	Unmodified						0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1027.54185	1026.53457	1.421	0.0014601	1.842	0.0018927	3.263	0.0033528	1027.5447520747514	30.462	0.048264	30.456	30.432	30.48	-0.0057545	144	40	1.533442	0.023015976	1.5319226	311.22784		4.6713257	-0.015437	-0.0013869	-0.0016449	NaN	4.4131	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5427.6	+		13449	10946	7741	7905							0.022368487179846852
LELVIPMF	8	Unmodified	_LELVIPMF_					0	0	0			REV__ENSG00000198712|ENST00000361739|MT-CO2	REV__ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.27498947375005	2	481.274989	960.535426	2.0963	0.0010089	-9.4767	-0.0045609	-7.3805	-0.003552	481.27078895356755	26.119	0.096558	26.119	26.07	26.167	0	1341	64	0.8117308	0.038790643	0.8117308	329.79337	0	15.76004						151	5	2	NaN	NaN	NaN	0.81807	1	7349	7349		6.794	1.0998	1	15804	+		13450	11182	7742	7906	10652	10652					0.05357971833359443
LEMECIGRI	9	Unmodified	_LEMECIGRI_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2673697944001	2	532.26737	1062.52019	0.80144	0.00042658	-6.0521	-0.0032213	-5.2506	-0.0027947	532.2637031153122	22.548	0.19296	22.535	22.462	22.655	-0.01354	1266	85	0.85786515	0.051622987	0.8563457	348.06458	0	20.94519						237	9	2	NaN	NaN	NaN	0.27608	1	10965	10965		20.449	1.2851	1	36354	+		13451	8396	7743	7907	10653	10653					-0.00857263026136934
LEMECIGRI	9	Unmodified						0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.26737	1062.52019	1.9232	0.0010237	-7.8722	-0.0041901	-5.949	-0.0031665	532.263170810156	22.525	0.19284	22.525	22.453	22.645	0	1266	88	0.85786515	0.0534696	0.85786515	348.06458		21.694397	-0.0049852	-0.00089264	0.00075972	NaN	20.449	209	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33936	+		13452	8396	7743	7907							-0.00857263026136934
LEMECIGRI	9	Unmodified						0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.26737	1062.52019	0.80144	0.00042658	-6.0521	-0.0032213	-5.2506	-0.0027947	532.2637031153122	22.548	0.19296	22.535	22.462	22.655	-0.01354	1266	85	0.85786515	0.051622987	0.8563457	348.06458		20.94519	0.0049852	0.001045	-0.00075972	NaN	20.449	237	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36354	+		13453	8396	7743	7907							-0.00857263026136934
LENGLNLF	8	Unmodified	_LENGLNLF_					0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4883587245001	1	919.488359	918.481082	1.0592	0.0009739	-0.49266	-0.000453	0.56652	0.00052091	919.4887063112576	29.569	0.14478	29.562	29.514	29.659	-0.0070667	339	58	1.4179583	0.033868074	1.4164388	288.23767	0	6.8845825						156	7	2	NaN	NaN	NaN	0.078718	1	6255	6255		69.782	8.511	1	16992			13454	5052	7744	7908	10654	10654					0.018580960061512997
LENGLNLF	8	Unmodified						0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	919.488359	918.481082	1.4758	0.001357	-0.97478	-0.0008963	0.50101	0.00046067	919.4878299725173	29.546	0.12064	29.546	29.522	29.642	0	339	55	1.4179583	0.032087207	1.4179583	288.23767		6.522583	-0.0081115	-0.00020179	0.00075972	NaN	69.782	156	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17189			13455	5052	7744	7908							0.018580960061512997
LENLTAEEL	9	Unmodified	_LENLTAEEL_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5255320918	1	1031.52553	1030.51826	1.8057	0.0018626	0.099976	0.00010313	1.9057	0.0019658	1031.5254820200296	20.285	0.048071	20.285	20.261	20.309	0	210	34	1.4944444	0.019518495	1.4944444	303.29733	0	3.9612732						44	3	2	NaN	NaN	NaN	0.60736	1	9796	9796		5.1889	0	1	2928.2			13456	1444	7745	7909	10655	10655					0.004217227612343777
LENLTAEEL	9	Unmodified						0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1031.52553	1030.51826	2.3945	0.00247	1.5707	0.0016202	3.9652	0.0040902	1031.5278014892695	20.285	0.072206	20.271	20.246	20.319	-0.014141	207	37	1.496219	0.021293998	1.4946996	303.6575		4.3216248	-0.0071561	0.00057354	0.00012758	NaN	5.1889	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593.3			13457	1444	7745	7909							0.004217227612343777
LENNQNLV	8	Unmodified	_LENNQNLV_					0	0	0		tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4843359791	1	943.484336	942.47706	1.6836	0.0015884	-11.023	-0.0104	-9.3398	-0.0088119	943.4721303111373	22.019	0.14456	22.019	21.946	22.091	0	309	88	1.435777	0.05167699	1.435777	291.75006	0	10.500763						191	7	2	NaN	NaN	NaN	0.78967	1	6869	6869		10.605	1.4818	1	15501			13458	13742	7746	7910	10656	10656					0.0035200651242348613
LENPIQEKSEY	11	Unmodified	_LENPIQEKSEY_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.5576300373333	3	450.55763	1348.65106	0.9346	0.00042109	7.0469	0.003175	7.9815	0.0035961	450.5609366546186	20.357	0.072094	20.357	20.333	20.405	0	1377	37	0.7895419	0.022203326	0.7895419	479.20477	0	13.476105						86	4	3	NaN	NaN	NaN	0.73057	1	19526	19526		2.3495	0.82398	1	7056.8			13459	3878	7747	7911	10657	10657					-0.009318775727706452
LEPDECPLK	9	Unmodified	_LEPDECPLK_					0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.5077735375999	1	1043.50777	1042.5005	1.5914	0.0016607	-3.3977	-0.0035456	-1.8063	-0.0018849	1043.5034742694372	27.591	0.096516	27.591	27.567	27.664	0	165	67	1.5210435	0.03898108	1.5210435	308.6488	0	7.9100037						146	5	2	NaN	NaN	NaN	0.14301	1	10314	10314		29.598	1.8095	1	16159	+		13460	10465	7748	7912	10658	10658					-0.01905315765270643
LEPDECPLK	9	Unmodified						0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1043.50777	1042.5005	1.5914	0.0016607	-3.3977	-0.0035456	-1.8063	-0.0018849	1043.5034742694372	27.591	0.096516	27.591	27.567	27.664	0	165	67	1.5210435	0.03898108	1.5210435	308.6488		7.9100037	-0.0068787	-0.00022931	0.00075972	NaN	29.598	146	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16159	+		13461	10465	7748	7912							-0.01905315765270643
LEPEIHRPF	9	Unmodified	_LEPEIHRPF_					0	0	0			REV__ENSG00000146574|ENST00000316731|CCZ1B	REV__ENSG00000146574|ENST00000316731|CCZ1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3061981417001	2	569.306198	1136.59784	1.9203	0.0010932	-7.346	-0.0041821	-5.4257	-0.0030889	569.3017638953861	24.647	0.43421	24.647	24.526	24.96	0	1215	94	0.8891654	0.0570091	0.8891654	360.46307	0	23.111206						700	19	4	NaN	NaN	NaN	0.14787	1	14345	14345		28.896	0	1	265080	+		13462	9349	7749	7913	10659	10659					0.035008342259061465
LEPEQTFFS	9	Unmodified	_LEPEQTFFS_					0	0	0		nc|ENSG00000171056|Q9BT81-2|SOX7;ENSG00000171056|ENST00000304501|SOX7;SOX7|p.V212L|1|0.41|ENSG00000171056|chr8:10726271-10726271|C/A|missense_variant	nc|ENSG00000171056|Q9BT81-2|SOX7	nc|ENSG00000171056|Q9BT81-2|SOX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2611219360501	2	549.261122	1096.50769	0.91932	0.00050495	-0.23386	-0.00012845	0.68546	0.0003765	549.7623886598365	34.855	0.14473	34.855	34.806	34.951	0	1245	64	0.87076044	0.038656652	0.87076044	353.15643	0	15.67807						209	7	4	NaN	NaN	NaN	0.33629	1	12679	12679		16.584	0	1	18225			13463	4763	7750	7914	10660	10660					-0.03670259893169714
LEPGGGVK	8	Unmodified	_LEPGGGVK_					0	0	0			REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.4250301862002	1	756.42503	755.417754	1.2481	0.00094413	4.0069	0.0030309	5.255	0.003975	756.4282897012063	31.403	0.12062	31.398	31.326	31.446	-0.0050716	579	40	1.2747238	0.023373842	1.2732043	259.94586	0	4.766449						96	6	2	NaN	NaN	NaN	0.78264	1	4087	4087		11.548	0	1	6999.3	+		13464	10491	7751	7915	10661	10661					0.03026155288910104
LEPGVLFLV	9	Unmodified	_LEPGVLFLV_					0	0	0			REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5920955145	1	986.592096	985.584819	1.7008	0.001678	-5.6923	-0.005616	-3.9915	-0.003938	986.5847718465719	36.856	0.12024	36.856	36.856	36.976	0	207	67	1.496219	0.03904736	1.496219	303.8403	0	7.929413						160	6	2	NaN	NaN	NaN	0.20577	1	8079	8079		24.961	1.6266	1	15904	+		13465	11937	7752	7916	10662	10662					0.09145003113792427
LEPHAGGD	8	Unmodified	_LEPHAGGD_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.18521733875	2	398.185217	794.355882	1.8354	0.00073083	3.9534	0.0015742	5.7888	0.002305	398.18694552157365	28.797	0.048244	28.789	28.74	28.789	-0.0083504	1419	31	0.76361835	0.018530905	0.7620989	311.16006	0	7.550995						41	3	2	NaN	NaN	NaN	0.8439	1	4589	4589		3.1533	0.36816	1	3014.4	+		13466	10428	7753	7917	10663	10663					-0.049521961302275486
LEPISLLE	8	Unmodified	_LEPISLLE_					0	0	0			REV__ENST00000423513.5_1_2:178097068-178097176:-|nuORF	REV__ENST00000423513.5_1_2:178097068-178097176:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.5240755288	1	913.524076	912.516799	1.3396	0.0012237	-5.3994	-0.0049325	-4.0598	-0.0037088	913.5182398116124	28.194	0.21721	28.185	28.112	28.33	-0.0089779	381	109	1.3929803	0.06421542	1.3914609	283.18756	0	13.054779						303	10	2	NaN	NaN	NaN	0.75561	1	6160	6160		15.175	0	1	31568	+		13467	9208	7754	7918	10664	10664					0.05704133463143535
LEPLIELI	8	Unmodified	_LEPLIELI_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.5761110993002	1	939.576111	938.568835	2.0822	0.0019564	0.22037	0.00020705	2.3026	0.0021635	939.57563662258	36.541	0.1687	36.543	36.446	36.615	0.0016785	276	49	1.4553556	0.028455377	1.4538362	295.74615	0	5.7824707						111	8	2	NaN	NaN	NaN	0.49126	1	6659	6659		31.561	2.8945	1	6986.5	+		13468	8455	7755	7919	10665	10665					0.09709296876917506
LEPQFRNPK	9	Unmodified	_LEPQFRNPK_					0	0	0			REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.8116476603501	2	564.811648	1127.60874	1.316	0.00074327	-8.7649	-0.0049505	-7.4489	-0.0042072	564.8067374322387	35.723	0.14468	35.723	35.651	35.795	0	1236	49	0.876284	0.029451072	0.876284	355.275	0	11.94046						142	7	3	NaN	NaN	NaN	0.31737	1	14003	14003		17.799	2.3363	1	13320	+		13469	8241	7756	7920	10666	10666					0.050042366001889604
LEPQFRNPK	9	Unmodified						0	0	0			REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.811648	1127.60874	1.316	0.00074327	-8.7649	-0.0049505	-7.4489	-0.0042072	564.8067374322387	35.723	0.14468	35.723	35.651	35.795	0	1236	49	0.876284	0.029451072	0.876284	355.275		11.94046	0.012535	-0.00066954	-0.00016068	NaN	17.799	142	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13320	+		13470	8241	7756	7920							0.050042366001889604
LEPQFRNPK	9	Unmodified						0	0	0			REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	REV__CHRNB1|p.S412C|1|0.29|ENSG00000170175|chr17:7455811-7455811|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.811648	1127.60874	0.80268	0.00045336	-7.8572	-0.0044379	-7.0546	-0.0039845	564.8074350360024	35.698	0.12053	35.698	35.674	35.794	0.00053024	1233	40	0.87812483	0.023930311	0.8766054	356.0213		9.702148	-0.012535	0.00035577	0.00016068	NaN	17.799	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12296	+		13471	8241	7756	7920							0.050042366001889604
LEPTFVPHPC	10	Unmodified	_LEPTFVPHPC_					0	0	0			REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.2813344494001	2	570.281334	1138.54812	1.2849	0.00073275	-7.1194	-0.0040601	-5.8345	-0.0033273	570.2783704098621	30.656	0.2172	30.656	30.632	30.849	0	1239	67	0.87444305	0.040486515	0.87444305	354.48746	0	16.41269						223	10	3	NaN	NaN	NaN	0.44258	1	14394	14394		21.835	7.41	1	29187	+		13472	11766	7757	7921	10667	10667					-0.0156161677439286
LEPTFVPHPC	10	Unmodified	_LEPTFVPHPC_					0	0	0			REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.2813344494001	2	570.281334	1138.54812	0.83663	0.00047712	-7.1431	-0.0040736	-6.3064	-0.0035964	570.2778878849239	30.655	0.24129	30.649	30.505	30.746	-0.0057545	1233	55	0.87812483	0.033128858	0.8766054	355.97998	0	13.429993						164	11	2	NaN	NaN	NaN	0.2358	1	13925	13925		32.453	9.1183	1	29687	+		13473	11766	7757	7921	10668	10668					-0.0156161677439286
LEPTFVPHPC	10	Unmodified						0	0	0			REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.281334	1138.54812	1.2849	0.00073275	-7.1194	-0.0040601	-5.8345	-0.0033273	570.2783704098621	30.656	0.2172	30.656	30.632	30.849	0	1239	67	0.87444305	0.040486515	0.87444305	354.48746		16.41269	0.0034033	1.446E-05	-0.0010812	NaN	32.453	223	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29187	+		13474	11766	7757	7921							-0.0156161677439286
LEPTFVPHPC	10	Unmodified						0	0	0			REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.281334	1138.54812	0.83663	0.00047712	-7.1431	-0.0040736	-6.3064	-0.0035964	570.2778878849239	30.655	0.24129	30.649	30.505	30.746	-0.0057545	1233	55	0.87812483	0.033128858	0.8766054	355.97998		13.429993	-0.0034033	-1.2534E-05	0.0010812	NaN	32.453	164	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29687	+		13475	11766	7757	7921							-0.0156161677439286
LEPTPSQG	8	Unmodified	_LEPTPSQG_					0	0	0		ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.4097740525001	1	828.409774	827.402498	2.3248	0.0019259	4.0945	0.0033919	6.4193	0.0053178	828.4129466085246	26.239	0.21721	26.239	26.191	26.408	0	408	61	1.3769034	0.035743713	1.3769034	280.34668	0	7.277649						224	10	3	NaN	NaN	NaN	0.78967	1	5112	5112		10.605	2.3147	1	28686			13476	6898	7758	7922	10669	10669					-0.018107562989484904
LEPWLIKEM	9	Unmodified	_LEPWLIKEM_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.8150100912501	2	579.81501	1157.61547	1.1538	0.00066899	-6.7206	-0.0038967	-5.5668	-0.0032277	579.8115097452003	27.253	0.14479	27.242	27.218	27.363	-0.010126	1185	64	0.90755045	0.038585663	0.906031	367.8362	0	15.639038						239	7	6	NaN	NaN	NaN	0.13602	1	14574	14574		30.61	4.8092	1	32532			13477	544	7759	7923	10670	10670					0.042964134365320206
LEQHTRQFRG	10	Unmodified	_LEQHTRQFRG_					0	0	0		nc|ENSG00000087589|Q9NQ75-3|CASS4;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-3|CASS4	nc|ENSG00000087589|Q9NQ75-3|CASS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.3338098757	2	636.33381	1270.65307	1.3801	0.00087821	6.0479	0.0038485	7.428	0.0047267	636.3376108966537	30.92	0.12071	30.915	30.843	30.964	-0.0050716	1128	49	0.9424274	0.029340029	0.94090796	381.57172	0	11.879242						172	6	4	NaN	NaN	NaN	0.64158	1	17435	17435		12.049	0.87837	1	23573			13478	1011	7760	7924	10671	10671					0.028566407463586074
LEQNEVVL	8	Unmodified	_LEQNEVVL_					0	0	0			REV__nc|ENSG00000100219|P17861|XBP1	REV__nc|ENSG00000100219|P17861|XBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.25838228185006	2	472.258382	942.502212	0.14553	6.8728E-05	-1.5131	-0.00071459	-1.3676	-0.00064586	472.2580318780108	21.128	0.26484	21.114	21.041	21.306	-0.014004	1338	73	0.81357855	0.044368207	0.8120591	330.6333	0	18.030975						302	12	3	NaN	NaN	NaN	0.56786	1	6741	6741		27.296	2.7342	1	42247	+		13479	8796	7761	7925	10672	10672					0.028660613150123027
LERHHLMSR	9	Unmodified	_LERHHLMSR_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7-2|ZNF106	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.54522464673335	3	393.545225	1177.61384	2.0017	0.00078775	-5.3136	-0.0020911	-3.3119	-0.0013034	393.54349020967686	26.143	0.16896	26.131	26.011	26.18	-0.011137	1425	49	0.7599118	0.029652655	0.75839233	461.89896	0	18.023804						117	8	3	NaN	NaN	NaN	0.35794	1	15178	15178		10.244	4.1031	1	9527.9	+		13480	8928	7762	7926	10673	10673					0.032142171911573314
LERLMKAV	8	Unmodified	_LERLMKAV_					0	0	0			REV__ENSG00000179855|ENST00000644452|GIPC3	REV__ENSG00000179855|ENST00000644452|GIPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.28896251625	2	480.288963	958.563372	1.3513	0.00064903	-5.1445	-0.0024708	-3.7932	-0.0018218	480.2862587413174	20.814	0.096386	20.814	20.79	20.887	0	1323	58	0.8228144	0.03508115	0.8228144	334.30618	0	14.253296						149	5	3	NaN	NaN	NaN	0.72013	1	7303	7303		17.799	0	1	12285	+		13481	10812	7763	7927	10674	10674					0.08243294813439661
LERTYLPSIG	10	Unmodified	_LERTYLPSIG_					0	0	0		ENST00000380152.7_1_13:32889759-32890588:+|nuORF	ENST00000380152.7_1_13:32889759-32890588:+|nuORF	ENST00000380152.7_1_13:32889759-32890588:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8191383414501	2	574.819138	1147.62372	1.7302	0.00099457	0.48809	0.00028056	2.2183	0.0012751	574.8186491598838	28.291	0.19302	28.291	28.243	28.436	0	1191	49	0.90387505	0.02940017	0.90387505	366.38406	0	11.917328						155	9	2	NaN	NaN	NaN	0.5358	1	14734	14734		17.97	0.77127	1	23588			13482	6730	7764	7928	10675	10675					0.055816836775193224
LERWHLVGC	9	Unmodified	_LERWHLVGC_					0	0	0		ENST00000548855.5_1_12:54966399-54967542:+|nuORF	ENST00000548855.5_1_12:54966399-54967542:+|nuORF	ENST00000548855.5_1_12:54966399-54967542:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.7871183190501	2	556.787118	1111.55968	0.76743	0.0004273	-4.4465	-0.0024757	-3.679	-0.0020484	556.7849177353514	31.501	0.14483	31.501	31.477	31.621	0	1251	55	0.8670771	0.0331468	0.8670771	351.60345	0	13.441162						202	7	4	NaN	NaN	NaN	0.20577	1	13340	13340		24.961	2.8347	1	64682			13483	7534	7765	7929	10676	10676					0.008366250395965835
LESCGGGGP	9	Unmodified	_LESCGGGGP_					0	0	0			REV__AluSx1_dup69050|chr11:17076400-17076571:+|8.70536544639615|0.0023214614879023|11.87|511.0|4|2|sense	REV__AluSx1_dup69050|chr11:17076400-17076571:+|8.70536544639615|0.0023214614879023|11.87|511.0|4|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	776.3243298636002	1	776.32433	775.317053	1.8999	0.0014749	5.3257	0.0041344	7.2255	0.0056094	776.3280140348935	25.178	0.096542	25.178	25.178	25.274	0	990	46	1.0265712	0.027374625	1.0265712	209.24593	0	5.579773						103	5	2	NaN	NaN	NaN	0.62619	1	4435	4435		4.4131	0.83987	1	6312.6	+		13484	8132	7766	7930	10677	10677					-0.07959244756250428
LESCGGGGP	9	Unmodified						0	0	0			REV__AluSx1_dup69050|chr11:17076400-17076571:+|8.70536544639615|0.0023214614879023|11.87|511.0|4|2|sense	REV__AluSx1_dup69050|chr11:17076400-17076571:+|8.70536544639615|0.0023214614879023|11.87|511.0|4|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	776.32433	775.317053	1.8999	0.0014749	5.3257	0.0041344	7.2255	0.0056094	776.3280140348935	25.178	0.096542	25.178	25.178	25.274	0	990	46	1.0265712	0.027374625	1.0265712	209.24593		5.579773	0	0	0	NaN	4.4131	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6312.6	+		13485	8132	7766	7930							-0.07959244756250428
LESEEQSDG	9	Unmodified	_LESEEQSDG_					0	0	0			REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.20400098765003	2	497.204001	992.393449	1.6866	0.00083861	-1.7091	-0.00084976	-0.022432	-1.1153E-05	497.2032461848851	19.3	0.11993	19.3	19.276	19.396	0	1344	34	0.8098828	0.020329893	0.8098828	328.89343	0	8.255981						84	6	2	NaN	NaN	NaN	0.38313	1	8294	8294		14.425	1.8371	1	6578.6	+		13486	8246	7767	7931	10678	10678					-0.10305194445925281
LESEEQSDG	9	Unmodified						0	0	0			REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.204001	992.393449	1.6866	0.00083861	-1.7091	-0.00084976	-0.022432	-1.1153E-05	497.2032461848851	19.3	0.11993	19.3	19.276	19.396	0	1344	34	0.8098828	0.020329893	0.8098828	328.89343		8.255981	-0.0039645	-0.00015275	0.00075972	NaN	14.425	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6578.6	+		13487	8246	7767	7931							-0.10305194445925281
LESEEQSDG	9	Unmodified						0	0	0			REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	REV__ENST00000431571.5_1_9:123906333-123914781:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.204001	992.393449	1.4941	0.00074289	-1.4055	-0.00069883	0.088616	4.406E-05	497.20419437546525	19.322	0.072096	19.308	19.284	19.356	-0.014141	1344	43	0.8098828	0.025875807	0.8083634	328.89343		10.508179	0.0039645	0.00014911	-0.00075972	NaN	14.425	86	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5941.4	+		13488	8246	7767	7931							-0.10305194445925281
LESERFDTHE	10	Unmodified	_LESERFDTHE_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.7860238056002	2	631.786024	1261.55749	1.1547	0.0007295	-8.3749	-0.0052911	-7.2202	-0.0045616	631.7809557290612	33.769	0.41014	33.769	33.576	33.986	0	1167	79	0.91857195	0.047728956	0.91857195	371.94196	0	19.32611						797	18	3	NaN	NaN	NaN	0.5358	1	18022	18022		17.97	3.5447	1	169220			13489	2915	7768	7932	10679	10679					-0.06282176955164687
LESERFDTHE	10	Unmodified	_LESERFDTHE_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.7860238056002	2	631.786024	1261.55749	1.0035	0.00063398	-8.256	-0.005216	-7.2525	-0.004582	631.7816367335296	33.768	0.53093	33.766	33.597	34.128	-0.0018463	1164	76	0.9204082	0.04589075	0.91888875	372.68546	0	18.581787						972	23	5	NaN	NaN	NaN	0.5626	1	17243	17243		16.858	6.6146	1	167130			13490	2915	7768	7932	10680	10680					-0.06282176955164687
LESGLVHF	8	Unmodified	_LESGLVHF_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000065883|ENST00000181839|CDK13;CDK12|p.N868Ifs*8|1|0.33|ENSG00000167258|chr17:39501432-39501432|A/-|frameshift_variant	nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-3|CDK12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4777940382002	1	901.477794	900.470518	1.0676	0.00096242	5.0012	0.0045084	6.0688	0.0054709	901.4836088528007	31.018	0.072399	31.018	30.994	31.066	0	387	76	1.389409	0.04464388	1.389409	282.51764	0	9.077728						109	4	3	NaN	NaN	NaN	0.72043	1	6091	6091		17.78	0	1	8837.4			13491	695	7769	7933	10681	10681					0.016301133517231392
LESKPELLV	9	Unmodified	_LESKPELLV_					0	0	0		ENST00000556551.2_1_14:74358863-74361941:+|nuORF;nc|ENSG00000119725|Q86VK4-2|ZNF410;ZNF410-LIN52|4|fusion;ENST00000412490.7_1_14:74358863-74376162:+|nuORF;ZNF410-LIN52|3|fusion;ZNF410-LIN52|2|fusion;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-3|ZNF410;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410	ENST00000556551.2_1_14:74358863-74361941:+|nuORF	ENST00000556551.2_1_14:74358863-74361941:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.6033884823	1	1027.60339	1026.59611	0.94175	0.00096774	-0.59918	-0.00061572	0.34257	0.00035202	1027.6021407325675	33.744	0.14485	33.742	33.694	33.839	-0.0018463	156	49	1.5263584	0.028343797	1.5248389	309.78992	0	5.7526855						81	7	2	NaN	NaN	NaN	0.61852	1	9451	9451		4.7291	0	1	7731.3			13492	2231	7770	7934	10682	10682					0.08387780417297108
LESKPELLV	9	Unmodified						0	0	0		ENST00000556551.2_1_14:74358863-74361941:+|nuORF;nc|ENSG00000119725|Q86VK4-2|ZNF410;ZNF410-LIN52|4|fusion;ENST00000412490.7_1_14:74358863-74376162:+|nuORF;ZNF410-LIN52|3|fusion;ZNF410-LIN52|2|fusion;nc|ENSG00000119725|Q86VK4-4|ZNF410;nc|ENSG00000119725|Q86VK4-3|ZNF410;ENSG00000119725|ENST00000555044|ZNF410;nc|ENSG00000119725|Q86VK4-5|ZNF410	ENST00000556551.2_1_14:74358863-74361941:+|nuORF	ENST00000556551.2_1_14:74358863-74361941:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1027.60339	1026.59611	1.1483	0.00118	0.27613	0.00028375	1.4244	0.0014638	1027.6039044170006	33.745	0.096516	33.745	33.697	33.793	0	156	46	1.5263584	0.026573777	1.5263584	309.7899		5.393402	0.0015701	0.00037735	0.00075972	NaN	4.7291	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9009.3			13493	2231	7770	7934							0.08387780417297108
LESPARSLP	9	Unmodified	_LESPARSLP_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.5363715496002	1	969.536372	968.529095	1.93	0.0018712	-2.0861	-0.0020225	-0.15611	-0.00015135	969.5345323996895	29.763	0.072403	29.763	29.763	29.836	0	270	61	1.458913	0.035565495	1.458913	296.3364	0	7.224121						71	4	2	NaN	NaN	NaN	0.29681	1	7573	7573		19.118	5.0767	1	4606.2			13494	4147	7771	7935	10683	10683					0.04357169926197457
LESTSSKV	8	Unmodified	_LESTSSKV_					0	0	0		RBBP6|p.E1245A|1|0.26|ENSG00000122257|chr16:24570424-24570424|A/C|missense_variant;IL4R-RBBP6|2|fusion;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;IL4R-RBBP6|3|fusion;ENSG00000122257|ENST00000319715|RBBP6	RBBP6|p.E1245A|1|0.26|ENSG00000122257|chr16:24570424-24570424|A/C|missense_variant	RBBP6|p.E1245A|1|0.26|ENSG00000122257|chr16:24570424-24570424|A/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.4516388672001	1	850.451639	849.444362	0.91716	0.00078	6.3855	0.0054305	7.3026	0.0062105	850.4567625362627	35.168	0.072422	35.168	35.12	35.192	0	384	40	1.3911947	0.02320993	1.3911947	283.13638	0	4.723694						56	4	2	NaN	NaN	NaN	0.82797	1	5376	5376		5.4659	0	1	3356.3			13495	2317	7772	7936	10684	10684					0.01361799389587759
LETDENDQEGS	11	Unmodified	_LETDENDQEGS_					0	0	0			REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.74676125935	2	618.746761	1235.47897	0.83014	0.00051364	-1.3918	-0.00086118	-0.56168	-0.00034754	619.2469198397481	33.069	0.21719	33.069	33.021	33.238	0	1188	91	0.90571284	0.055113494	0.90571284	366.8189	0	22.32129						646	10	6	NaN	NaN	NaN	0.37105	1	17410	17410		23.086	8.6608	1	92623	+		13496	8708	7773	7937	10685	10685					-0.12935074050938056
LETDENDQEGS	11	Unmodified						0	0	0			REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.746761	1235.47897	0.83014	0.00051364	-1.3918	-0.00086118	-0.56168	-0.00034754	619.2469198397481	33.069	0.21719	33.069	33.021	33.238	0	1188	91	0.90571284	0.055113494	0.90571284	366.8189		22.32129	-0.010191	-0.00026354	-0.00015909	NaN	23.086	646	10	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92623	+		13497	8708	7773	7937							-0.12935074050938056
LETDENDQEGS	11	Unmodified						0	0	0			REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	REV__SLC23A2|p.L245*|1|0.19|ENSG00000089057|chr20:4883732-4883732|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.746761	1235.47897	0.5365	0.00033196	-0.83875	-0.00051898	-0.30225	-0.00018702	619.2473536633912	33.092	0.217	33.09	33.018	33.235	-0.0024757	1185	91	0.90755045	0.055107534	0.906031	367.56314		22.318878	0.010191	0.00042087	0.00015909	NaN	23.086	658	10	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66881	+		13498	8708	7773	7937							-0.12935074050938056
LETDRCCSC	9	Unmodified	_LETDRCCSC_					0	0	0			REV__ENST00000596287.5_1_19:51301978-51302572:-|nuORF	REV__ENST00000596287.5_1_19:51301978-51302572:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.1935445368001	2	515.193545	1028.37254	1.9327	0.0009957	1.6492	0.00084965	3.5819	0.0018454	515.6956674119176	25.081	0.14477	25.081	25.009	25.153	0	1332	52	0.8172735	0.031412125	0.8172735	331.736	0	12.750366						130	7	3	NaN	NaN	NaN	0.66529	1	9694	9694		2.1763	0	1	9639.1	+		13499	12945	7774	7938	10686	10686					-0.14051522622435186
LETDWESIL	9	Unmodified	_LETDWESIL_					0	0	0		ENST00000576393.5_1_17:79651084-79657315:+|nuORF;ENST00000576498.5_1_17:79651084-79658602:+|nuORF;nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	ENST00000576393.5_1_17:79651084-79657315:+|nuORF	ENST00000576393.5_1_17:79651084-79657315:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2742293113001	2	553.274229	1104.53391	1.5354	0.00084951	5.553	0.0030723	7.0884	0.0039218	553.2770083706351	22.645	0.19304	22.645	22.573	22.766	0	1191	121	0.90387505	0.073611856	0.90387505	366.55368	0	29.852234						386	9	3	NaN	NaN	NaN	0.27608	1	13035	13035		20.449	1.3303	1	51768			13500	5410	7775	7939	10687	10687					-0.014179907216885113
LETFIGKKGMY	11	Unmodified	_LETFIGKKGMY_					0	0	0			REV__tr|U7SZH2|U7SZH2_FUSNUPhenylalanine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheSPE=3SV=1	REV__tr|U7SZH2|U7SZH2_FUSNUPhenylalanine--tRNAligasealphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.8442988469501	2	643.844299	1285.67404	2.3025	0.0014825	-8.3482	-0.005375	-6.0457	-0.0038925	643.8402407967873	26.215	0.12064	26.215	26.167	26.288	0	1110	58	0.95342636	0.03482431	0.95342636	385.97653	0	14.097961						103	6	2	NaN	NaN	NaN	0.7072	1	18534	18534		6.9844	1.5344	1	11301	+		13501	13559	7776	7940	10688	10688					0.04263470011028403
LETGLFFL	8	Unmodified	_LETGLFFL_					0	0	0		SLC9A6|p.L401Rfs*14|1|0.29|ENSG00000198689|chrX:136016706-136016706|T/-|frameshift_variant;ENSG00000181804|ENST00000316549|SLC9A9;nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6	SLC9A6|p.L401Rfs*14|1|0.29|ENSG00000198689|chrX:136016706-136016706|T/-|frameshift_variant	SLC9A6|p.L401Rfs*14|1|0.29|ENSG00000198689|chrX:136016706-136016706|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.5185962204001	1	939.518596	938.51132	1.2694	0.0011927	2.3066	0.0021671	3.576	0.0033598	939.5215219810502	36.446	0.072403	36.446	36.446	36.519	0	273	43	1.4571344	0.024901152	1.4571344	296.10788	0	5.060211						79	4	2	NaN	NaN	NaN	0.54545	1	6790	6790		28.667	0	1	6971.1			13502	5239	7777	7941	10689	10689					0.03960454671334901
LETIAPGH	8	Unmodified	_LETIAPGH_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-5|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.2268851882	2	419.226885	836.439217	1.2269	0.00051435	1.3823	0.00057949	2.6092	0.0010938	419.2273414307346	24.26	0.024132	24.248	24.248	24.272	-0.012749	1383	154	0.7858409	0.09431827	0.7843215	319.94217	0	38.400146						244	2	3	NaN	NaN	NaN	0.82332	1	5093	5093		6.0903	0.62448	1	84709			13503	4743	7778	7942	10690	10690					0.014455403176157233
LETLILDSNPL	11	Unmodified	_LETLILDSNPL_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3451859164501	2	614.345186	1226.67582	0.19743	0.00012129	-2.1147	-0.0012991	-1.9173	-0.0011779	614.3438294823573	33.769	0.1448	33.769	33.721	33.866	0	1131	40	0.94059354	0.02384001	0.94059354	380.976	0	9.656128						147	7	3	NaN	NaN	NaN	0.58731	1	17157	17157		14.854	1.7528	1	13371			13504	4693	7779	7943	10691	10691					0.07154802300624397
LETLYDVNIF	10	Unmodified	_LETLYDVNIF_					0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.81880399045	2	613.818804	1225.62306	1.0787	0.00066214	-8.3774	-0.0051422	-7.2987	-0.0044801	613.8137025922715	28.918	0.19312	28.918	28.846	29.039	0	1152	88	0.92775106	0.053227544	0.92775106	375.77792	0	21.559387						291	9	2	NaN	NaN	NaN	0.25724	1	17128	17128		30.61	0.57471	1	98292	+		13505	10903	7780	7944	10692	10692					0.01926844237800651
LETSAKSS	8	Unmodified	_LETSAKSS_					0	0	0		ENST00000558119.5_1_15:63537012-63555815:+|nuORF;ENSG00000166128|ENST00000321437|RAB8B	ENST00000558119.5_1_15:63537012-63555815:+|nuORF	ENST00000558119.5_1_15:63537012-63555815:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.4203387388001	1	822.420339	821.413062	1.7382	0.0014295	4.1995	0.0034538	5.9377	0.0048833	822.4236727096774	27.229	0.12062	27.229	27.205	27.326	0	453	82	1.3500742	0.048354387	1.3500742	274.9168	0	9.846436						225	6	3	NaN	NaN	NaN	0.77489	1	5034	5034		12.588	4.2976	1	31015			13506	4450	7781	7945	10693	10693					-0.004787736445109658
LETVTLDVT	9	Unmodified	_LETVTLDVT_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6;ENSG00000139547|ENST00000398138|RDH16	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5353684966002	1	990.535368	989.528092	1.9366	0.0019183	-1.7257	-0.0017094	0.21088	0.00020889	990.533808829304	32.418	0.16889	32.418	32.345	32.514	0	192	106	1.5050892	0.062117457	1.5050892	305.62476	0	12.613617						386	8	2	NaN	NaN	NaN	0.062072	1	8199	8199		41.785	0.32444	1	89484			13507	474	7782	7946	10694	10694					0.0329091076663417
LETVTLDVT	9	Unmodified						0	0	0		ENSG00000025423|ENST00000322165|HSD17B6;ENSG00000139547|ENST00000398138|RDH16	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	990.535368	989.528092	1.3485	0.0013357	-0.91967	-0.00091096	0.42881	0.00042475	990.5362030427556	32.417	0.4344	32.414	32.245	32.679	-0.0031052	189	121	1.5068626	0.07100272	1.5053432	305.98486		14.417877	-0.0021038	0.00047456	0.00012701	NaN	41.785	701	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113850			13508	474	7782	7946							0.0329091076663417
LEVGATPP	8	Unmodified	_LEVGATPP_					0	0	0		ENST00000598675.1_1_19:7997268-7998765:-|nuORF	ENST00000598675.1_1_19:7997268-7998765:-|nuORF	ENST00000598675.1_1_19:7997268-7998765:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4246958352002	1	783.424696	782.417419	1.3401	0.0010499	4.723	0.0037001	6.0631	0.00475	783.4281004727304	31.621	0.28966	31.621	31.525	31.815	0	501	133	1.3214091	0.07898903	1.3214091	269.3002	0	16.097778						521	13	4	NaN	NaN	NaN	0.82332	1	4528	4528		6.0903	0	1	121890			13509	7762	7783	7947	10695	10695					0.017507355690554505
LEVGGPAD	8	Unmodified	_LEVGGPAD_					0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.3726602647	1	757.37266	756.365384	2.0875	0.001581	5.3688	0.0040662	7.4563	0.0056472	757.3764122282055	26.288	0.19307	26.288	26.239	26.432	0	585	82	1.2711272	0.0485456	1.2711272	259.20667	0	9.899353						244	9	2	NaN	NaN	NaN	0.80071	1	4172	4172		9.1232	0	1	41273	+		13510	8572	7784	7948	10696	10696					-0.022544278447185206
LEVGGPAD	8	Unmodified	_LEVGGPAD_					0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.3726602647	1	757.37266	756.365384	1.896	0.001436	4.0316	0.0030534	5.9276	0.0044894	757.3750149381415	26.287	0.21713	26.276	26.228	26.445	-0.011137	582	91	1.2729256	0.053948164	1.2714062	259.5734	0	11.001038						331	10	3	NaN	NaN	NaN	0.77489	1	4094	4094		12.588	0	1	47026	+		13511	8572	7784	7948	10697	10697					-0.022544278447185206
LEVGGPAD	8	Unmodified						0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	757.37266	756.365384	2.0875	0.001581	5.3688	0.0040662	7.4563	0.0056472	757.3764122282055	26.288	0.19307	26.288	26.239	26.432	0	585	82	1.2711272	0.0485456	1.2711272	259.20667		9.899353	0.005678	0.0005087	-0.00013947	NaN	12.588	244	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41273	+		13512	8572	7784	7948							-0.022544278447185206
LEVGGPAD	8	Unmodified						0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	757.37266	756.365384	1.896	0.001436	4.0316	0.0030534	5.9276	0.0044894	757.3750149381415	26.287	0.21713	26.276	26.228	26.445	-0.011137	582	91	1.2729256	0.053948164	1.2714062	259.5734		11.001038	-0.005678	-0.00050401	0.00013947	NaN	12.588	331	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47026	+		13513	8572	7784	7948							-0.022544278447185206
LEVGTATG	8	Unmodified	_LEVGTATG_					0	0	0		tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	747.3883103289002	1	747.38831	746.381034	1.4452	0.0010801	7.2921	0.00545	8.7372	0.0065301	747.3933402054955	27.591	0.19307	27.591	27.543	27.736	0	585	55	1.2711272	0.032372475	1.2711272	259.2684	0	6.6029053						237	9	3	NaN	NaN	NaN	0.82797	1	3995	3995		5.4659	0	1	26751			13514	13992	7785	7949	10698	10698					-0.0023014132765410977
LEVGYGAL	8	Unmodified	_LEVGYGAL_					0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4403458994001	1	821.440346	820.433069	2.3662	0.0019437	-1.1547	-0.00094854	1.2115	0.00099518	821.4398152058554	25.877	0.12064	25.877	25.853	25.974	0	480	67	1.3339561	0.039431334	1.3339561	271.64	0	8.029602						129	6	2	NaN	NaN	NaN	0.40747	1	5025	5025		36.036	12.186	1	13590	+		13515	8502	7786	7950	10699	10699					0.01567022086101133
LEVGYGAL	8	Unmodified						0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.440346	820.433069	2.3662	0.0019437	-1.1547	-0.00094854	1.2115	0.00099518	821.4398152058554	25.877	0.12064	25.877	25.853	25.974	0	480	67	1.3339561	0.039431334	1.3339561	271.64		8.029602	-0.0061523	-0.00017519	-0.00013611	NaN	36.036	129	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13590	+		13516	8502	7786	7950							0.01567022086101133
LEVPDMNI	8	Unmodified	_LEVPDMNI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4600950635	1	930.460095	929.452819	1.9933	0.0018547	0.5335	0.0004964	2.5268	0.0023511	930.459445433758	28.436	0.24134	28.436	28.339	28.581	0	360	67	1.405474	0.039242864	1.405474	285.6501	0	7.975769						330	11	3	NaN	NaN	NaN	0.13059	1	6586	6586		58.235	2.8224	1	36287			13517	2444	7787	7951	10700	10700					-0.014729699654594697
LEVTKSTG	8	Unmodified	_LEVTKSTG_					0	0	0		ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	834.4567242451001	1	834.456724	833.449448	1.0157	0.00084753	5.1814	0.0043236	6.197	0.0051711	834.4605617893849	32.175	0.048248	32.172	32.148	32.196	-0.0037613	444	40	1.3554435	0.023264408	1.353924	275.94458	0	4.736206						64	3	2	NaN	NaN	NaN	0.77489	1	5064	5064		12.588	0	1	5185.2			13518	4003	7788	7952	10701	10701					0.0260610325219659
LEVTKSTG	8	Unmodified						0	0	0		ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	834.456724	833.449448	1.4104	0.0011769	4.3604	0.0036386	5.7708	0.0048155	834.4607466137346	32.177	0.048298	32.177	32.152	32.201	0	447	46	1.3536539	0.02684927	1.3536539	275.58026		5.466034	0.0024357	-0.00043429	-0.00013506	NaN	12.588	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5281.2			13519	4003	7788	7952							0.0260610325219659
LEWPYQEQLLL	11	Unmodified	_LEWPYQEQLLL_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.3795600500501	2	716.37956	1430.74457	1.9519	0.0013983	2.1196	0.0015184	4.0715	0.0029167	716.3811633247499	18.268	0.14386	18.268	18.221	18.364	0	1047	55	0.99186665	0.032915115	0.99186665	401.10526	0	13.310699						276	7	5	NaN	NaN	NaN	0.74155	1	20281	20281		4.7291	0	1	49511			13520	4872	7789	7953	10702	10702					0.046424666003531456
LEYEYLNYNQ	10	Unmodified	_LEYEYLNYNQ_					0	0	0		tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	tr|U7SNH6|U7SNH6_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01762PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.8064248967	2	674.806425	1347.5983	0.35873	0.00024207	-2.4905	-0.0016806	-2.1318	-0.0014385	674.8041127332757	31.548	0.24135	31.544	31.495	31.737	-0.0044174	1107	73	0.9552588	0.043972015	0.9537394	386.52942	0	17.792542						309	11	2	NaN	NaN	NaN	0.6772	1	18644	18644		9.6116	0.69255	1	70998			13521	13787	7790	7954	10703	10703					-0.06159835635571653
LEYYQEHL	8	Unmodified	_LEYYQEHL_					0	0	0		nc|ENSG00000008735|Q13387-4|MAPK8IP2;nc|ENSG00000008735|Q13387-3|MAPK8IP2;nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2	nc|ENSG00000008735|Q13387-4|MAPK8IP2	nc|ENSG00000008735|Q13387-4|MAPK8IP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.76128911155	2	547.761289	1093.50803	1.4307	0.00078369	-7.1124	-0.0038959	-5.6817	-0.0031122	547.7575607436233	34.106	0.21725	34.105	34.056	34.274	-0.0012474	1242	70	0.87260187	0.042338252	0.8710824	353.9153	0	17.171783						626	10	6	NaN	NaN	NaN	0.73961	1	12214	12214		16.584	2.1591	1	265760			13522	379	7791	7955	10704	10704					-0.03498840173347162
LFAAPGWFM	9	Unmodified	_LFAAPGWFM_					0	0	0			REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF	REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2571310716	2	520.257131	1038.49971	1.4281	0.000743	-0.55093	-0.00028663	0.87721	0.00045637	520.2578766131286	21.272	0.07222	21.272	21.248	21.32	0	1275	58	0.85233563	0.035039425	0.85233563	345.92337	0	14.220856						110	4	2	NaN	NaN	NaN	0.48931	1	10125	10125		10.052	2.4613	1	9732.3	+		13523	12601	7792	7956	10705	10705					-0.018000656236608847
LFAAPGWFM	9	Unmodified						0	0	0			REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF	REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.257131	1038.49971	1.4281	0.000743	-0.55093	-0.00028663	0.87721	0.00045637	520.2578766131286	21.272	0.07222	21.272	21.248	21.32	0	1275	58	0.85233563	0.035039425	0.85233563	345.92337		14.220856	0.0069098	-0.0025145	0.0016815	NaN	10.052	110	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9732.3	+		13524	12601	7792	7956							-0.018000656236608847
LFADSTTSNFI	11	Unmodified	_LFADSTTSNFI_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.2982357238501	2	608.298236	1214.58192	0.5137	0.00031248	6.2795	0.0038198	6.7932	0.0041323	608.3025774726289	33.335	0.19309	33.335	33.287	33.48	0	1167	100	0.91857195	0.06058234	0.91857195	372.0976	0	24.540863						276	9	3	NaN	NaN	NaN	0.59385	1	16839	16839		14.425	0.96197	1	30779	+		13525	10703	7793	7957	10706	10706					-0.01678916801665764
LFAEMREQLGS	11	Unmodified	_LFAEMREQLGS_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5483004075	3	427.5483	1279.62307	1.7458	0.0007464	-2.1063	-0.00090056	-0.36058	-0.00015417	427.5468572888239	23.127	0.072218	23.114	23.065	23.138	-0.013296	1437	34	0.7524962	0.020396113	0.75097674	456.96976	0	12.385986						62	4	2	NaN	NaN	NaN	0.74155	1	17598	17598		1.8502	0	1	4539			13526	3919	7794	7958	10707	10707					-0.005554790338464954
LFAFASRPTK	10	Unmodified	_LFAFASRPTK_					0	0	0		TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.32439089485	2	569.324391	1136.63423	0.92599	0.00052719	1.2308	0.00070072	2.1568	0.0012279	569.3249392587325	28.604	0.193	28.596	28.475	28.668	-0.0083504	1194	67	0.902037	0.04042095	0.9005176	365.681	0	16.386414						213	9	3	NaN	NaN	NaN	0.75316	1	13882	13882		4.4131	0.84331	1	18615			13527	13715	7795	7959	10708	10708					0.07137711122595647
LFAFASRPTK	10	Unmodified						0	0	0		TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIAM1|p.L640F|1|0.29|ENSG00000156299|chr21:31223483-31223483|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.324391	1136.63423	1.7138	0.00097571	0.93372	0.00053159	2.6475	0.0015073	569.3245526379096	28.581	0.096535	28.581	28.532	28.629	0	1194	64	0.902037	0.038589835	0.902037	365.681		15.644104	-0.0075194	-0.00013176	0.00075972	NaN	4.4131	168	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17698			13528	13715	7795	7959							0.07137711122595647
LFAFIGVF	8	Unmodified	_LFAFIGVF_					0	0	0			REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.2627393782501	2	457.262739	912.510926	0.82423	0.00037689	1.6865	0.00077119	2.5108	0.0011481	457.2634481667044	27.615	0.14477	27.605	27.581	27.726	-0.009552	1314	76	0.8283535	0.046149373	0.8268341	336.7967	0	18.763672						170	7	2	NaN	NaN	NaN	0.84876	1	6161	6161		0.39566	0	1	14382	+		13529	11829	7796	7960	10709	10709					0.05117079742149144
LFAFIGVF	8	Unmodified						0	0	0			REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.262739	912.510926	0.86663	0.00039628	2.2658	0.0010361	3.1325	0.0014324	457.26319324099535	27.543	0.14482	27.543	27.495	27.639	0	1329	70	0.81912065	0.04246664	0.81912065	333.04276		17.266327	-0.031031	0.00016153	-0.0038567	NaN	0.39566	149	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15162	+		13530	11829	7796	7960							0.05117079742149144
LFAFIGVF	8	Unmodified						0	0	0			REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	REV__ENST00000358701.9_2_9:139100252-139100573:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	457.262739	912.510926	0.82423	0.00037689	1.6865	0.00077119	2.5108	0.0011481	457.2634481667044	27.615	0.14477	27.605	27.581	27.726	-0.009552	1314	76	0.8283535	0.046149373	0.8268341	336.7967		18.763672	0.031031	-0.00036824	0.0038567	NaN	0.39566	170	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14382	+		13531	11829	7796	7960							0.05117079742149144
LFALIVPTL	9	Unmodified	_LFALIVPTL_					0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.6284810208002	1	986.628481	985.621205	1.2898	0.0012726	-0.81563	-0.00080473	0.47417	0.00046783	986.6275520634368	38.636	0.4566	38.636	38.492	38.948	0	207	82	1.496219	0.047919154	1.496219	303.84012	0	9.731049						650	20	2	NaN	NaN	NaN	0.098515	1	8083	8083		36.036	0	1	123140	+		13532	13305	7797	7961	10710	10710					0.12781880010527402
LFALIVPTL	9	Unmodified						0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	986.628481	985.621205	1.2898	0.0012726	-0.81563	-0.00080473	0.47417	0.00046783	986.6275520634368	38.636	0.4566	38.636	38.492	38.948	0	207	82	1.496219	0.047919154	1.496219	303.84012		9.731049	0.071224	-0.00035416	-0.0010146	NaN	36.036	650	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123140	+		13533	13305	7797	7961							0.12781880010527402
LFALIVPTL	9	Unmodified						0	0	0			REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	REV__RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	986.628481	985.621205	1.7401	0.0017168	0.096487	9.5197E-05	1.8365	0.001812	986.628434058759	38.489	0.16823	38.493	38.373	38.542	0.0040283	201	76	1.4997677	0.04436016	1.4982482	304.56073		9.008301	-0.071224	0.00054577	0.0010146	NaN	36.036	259	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45941	+		13534	13305	7797	7961							0.12781880010527402
LFALRHIGSGR	11	Unmodified	_LFALRHIGSGR_					0	0	0			REV__nc|ENSG00000204316|Q96DV4-2|MRPL38	REV__nc|ENSG00000204316|Q96DV4-2|MRPL38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.8594635202	2	613.859464	1225.70437	0.98917	0.00060721	1.2796	0.00078547	2.2687	0.0013927	613.8604963241971	37.84	0.14429	37.844	37.748	37.892	0.0034218	1137	37	0.9369253	0.02200979	0.93540585	379.49353	0	8.914856						106	7	2	NaN	NaN	NaN	0.74794	1	16447	16447		4.3102	0.34164	1	8350	+		13535	11233	7798	7962	10711	10711					0.10055009511074786
LFATCLVLA	9	Unmodified	_LFATCLVLA_					0	0	0			REV__ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	REV__ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.537951454	1	950.537951	949.530675	1.4593	0.0013871	-0.39555	-0.00037598	1.0638	0.0010111	950.5376670059361	36.083	0.40978	36.084	35.867	36.277	0.0011024	261	79	1.4642475	0.046239972	1.462728	297.50342	0	9.394989						521	18	2	NaN	NaN	NaN	0.11467	1	6954	6954		33.698	2.9072	1	79745	+		13536	11076	7799	7963	10712	10712					0.05389087690571159
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.28694275605	2	537.286943	1072.55933	1.401	0.00075276	-1.7746	-0.00095349	-0.3736	-0.00020073	537.2860046132793	33.624	0.26537	33.624	33.576	33.842	0	1302	58	0.8357362	0.035062134	0.8357362	339.04547	0	14.224182						434	12	5	NaN	NaN	NaN	0.00020136	1	11672	11672		116.74	71.571	1	253410			13537	3520	7800	7964	10713	10713					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5666090455	1	1073.56661	1072.55933	1.226	0.0013162	-0.68554	-0.00073597	0.54049	0.00058025	1073.5648841495697	33.624	0.24122	33.624	33.576	33.817	0	81	127	1.5705823	0.07425308	1.5705823	318.58447	0	15.061859						651	11	5	NaN	NaN	NaN	0.0028258	1	11674	11674		108.53	43.981	1	178420			13538	3520	7800	7964	10714	10714					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.28694275605	2	537.286943	1072.55933	0.76504	0.00041105	-0.98727	-0.00053045	-0.22223	-0.0001194	537.28670722917	33.623	0.26549	33.621	33.573	33.838	-0.0018501	1302	55	0.8357362	0.03321141	0.8342168	339.04547	0	13.473358						453	12	5	NaN	NaN	NaN	0.0084155	1	11367	11367		95.62	45.304	1	239340			13539	3520	7800	7964	10715	10715					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.28694275605	2	537.286943	1072.55933	1.2574	0.0006756	-1.2197	-0.00065532	0.037743	2.0279E-05	537.2866781645441	34.685	0.096447	34.684	34.612	34.708	-0.0006485	1299	37	0.8375814	0.02214086	0.83606195	339.79404	0	8.982208						67	5	2	NaN	NaN	NaN	0.23112	1	11368	11368		23.334	5.5541	1	6379.2			13540	3520	7800	7964	10716	10716					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5666090455	1	1073.56661	1072.55933	0.99993	0.0010735	-0.87034	-0.00093437	0.12959	0.00013912	1073.5649328959591	33.623	0.31373	33.621	33.573	33.887	-0.0018501	81	97	1.5705823	0.056549788	1.5690628	318.58447	0	11.470825						667	14	5	NaN	NaN	NaN	0.0021374	1	11369	11369		110.61	43.451	1	168500			13541	3520	7800	7964	10717	10717					0.0259552859138239
LFAVILSTF	9	Unmodified	_LFAVILSTF_					0	0	0		ENST00000519180.1_1_5:178349154-178349586:+|nuORF;nc|ENSG00000151665|Q07326-2|PIGF;ENSG00000151665|ENST00000281382|PIGF	ENST00000519180.1_1_5:178349154-178349586:+|nuORF	ENST00000519180.1_1_5:178349154-178349586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5920955145002	1	1010.5921	1009.58482	1.4882	0.001504	0.23527	0.00023776	1.7235	0.0017417	1010.5934822336261	36.567	0.12049	36.567	36.543	36.663	0	135	64	1.5387528	0.037175775	1.5387528	312.37524	0	7.546875						129	6	3	NaN	NaN	NaN	0.032417	1	8972	8972		55.947	22.249	1	9794.8			13542	3748	7801	7965	10718	10718					0.08041003113817169
LFAVILSTF	9	Unmodified	_LFAVILSTF_					0	0	0		ENST00000519180.1_1_5:178349154-178349586:+|nuORF;nc|ENSG00000151665|Q07326-2|PIGF;ENSG00000151665|ENST00000281382|PIGF	ENST00000519180.1_1_5:178349154-178349586:+|nuORF	ENST00000519180.1_1_5:178349154-178349586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5920955145002	1	1010.5921	1009.58482	1.7336	0.0017519	0.70059	0.00070801	2.4342	0.00246	1010.592685065872	36.589	0.12051	36.591	36.543	36.663	0.0016747	132	67	1.5405227	0.038952112	1.5390033	312.73453	0	7.907501						126	6	3	NaN	NaN	NaN	0.098515	1	8801	8801		36.036	13.91	1	9809.4			13543	3748	7801	7965	10719	10719					0.08041003113817169
LFCATLVLT	9	Unmodified	_LFCATLVLT_					0	0	0			REV__ENST00000414513.7_1_X:2536701-2544672:+|nuORF	REV__ENST00000414513.7_1_X:2536701-2544672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5485161403	1	980.548516	979.54124	1.5164	0.0014869	-0.040705	-3.9913E-05	1.4757	0.001447	980.5480840303667	34.806	0.12067	34.806	34.758	34.879	0	219	58	1.4891195	0.033728123	1.4891195	302.4243	0	6.849823						148	6	2	NaN	NaN	NaN	0.36492	1	7875	7875		15.175	3.6269	1	19409	+		13544	12085	7802	7966	10720	10720					0.050650703450060064
LFCKTLTI	8	Unmodified	_LFCKTLTI_					0	0	0		KDR|p.T401Pfs*28|1|0.24|ENSG00000128052|chr4:55110460-55110460|G/-|frameshift_variant;nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR;ENSG00000128052|ENST00000263923|KDR	KDR|p.T401Pfs*28|1|0.24|ENSG00000128052|chr4:55110460-55110460|G/-|frameshift_variant	KDR|p.T401Pfs*28|1|0.24|ENSG00000128052|chr4:55110460-55110460|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.7726139603	2	469.772614	937.530675	1.5233	0.00071561	-9.6131	-0.0045159	-8.0897	-0.0038003	469.76822682410966	18.964	0.096067	18.964	18.916	19.012	0	1314	67	0.8283535	0.040622413	0.8283535	336.66345	0	16.50998						148	5	2	NaN	NaN	NaN	0.65542	1	6771	6771		21.835	1.2795	1	29855			13545	2557	7803	7967	10721	10721					0.0594108769058721
LFCKWVSFL	9	Unmodified	_LFCKWVSFL_					0	0	0		ENST00000205061.9_2_16:74481415-74481883:-|nuORF	ENST00000205061.9_2_16:74481415-74481883:-|nuORF	ENST00000205061.9_2_16:74481415-74481883:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.8069880939	2	571.806988	1141.59942	0.85801	0.00049061	-7.8995	-0.004517	-7.0415	-0.0040264	571.8026238545374	26.722	0.12067	26.711	26.687	26.808	-0.010645	1179	49	0.9112251	0.02939701	0.90970564	369.38657	0	11.916779						162	6	3	NaN	NaN	NaN	0.14787	1	14047	14047		28.896	7.0606	1	32022			13546	6225	7804	7968	10722	10722					0.03428751990281853
LFCNVNSIL	9	Unmodified	_LFCNVNSIL_					0	0	0			REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF	REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5339287086	1	1022.53393	1021.52665	1.2854	0.0013143	-10.924	-0.01117	-9.6386	-0.0098558	1022.5220175034449	35.167	0.14482	35.167	35.094	35.239	-4.5776E-05	180	79	1.5121819	0.046073437	1.5106624	306.9329	0	9.351685						143	7	2	NaN	NaN	NaN	0.062072	1	9239	9239		41.785	5.198	1	12650	+		13547	12794	7805	7969	10723	10723					0.016749981968700922
LFCNVNSIL	9	Unmodified						0	0	0			REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF	REV__ENST00000563648.1_1_15:72227626-72242653:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1022.53393	1021.52665	1.2854	0.0013143	-10.924	-0.01117	-9.6386	-0.0098558	1022.5220175034449	35.167	0.14482	35.167	35.094	35.239	-4.5776E-05	180	79	1.5121819	0.046073437	1.5106624	306.9329		9.351685	-0.0007591	-0.00070796	0.00012673	NaN	41.785	143	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12650	+		13548	12794	7805	7969							0.016749981968700922
LFCRTQWY	8	Unmodified	_LFCRTQWY_					0	0	0		nc|ENSG00000140285|P21781-2|FGF7;ENSG00000140285|ENST00000267843|FGF7	nc|ENSG00000140285|P21781-2|FGF7	nc|ENSG00000140285|P21781-2|FGF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7683942496501	2	558.768394	1115.52224	1.839	0.0010276	-9.071	-0.0050686	-7.232	-0.004041	558.7633188587026	25.491	0.096497	25.491	25.467	25.564	0	1245	49	0.87076044	0.029470205	0.87076044	353.08176	0	11.949768						135	5	4	NaN	NaN	NaN	0.78264	1	13489	13489		11.548	0.37812	1	19726			13549	3259	7806	7970	10724	10724					-0.0309046622603546
LFDAVIRL	8	Unmodified	_LFDAVIRL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.7896526205	2	473.789653	945.564752	1.515	0.00071777	-2.8784	-0.0013638	-1.3634	-0.00064598	473.7881661475025	28.484	0.14483	28.484	28.436	28.581	0	1323	49	0.8228144	0.029543579	0.8228144	334.37112	0	12.005768						216	7	4	NaN	NaN	NaN	0.023741	1	6978	6978		93.472	8.593	1	62865			13550	1815	7807	7971	10725	10725					0.08979252173844543
LFDAVIRL	8	Unmodified	_LFDAVIRL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.7896526205	2	473.789653	945.564752	0.41737	0.00019774	-1.5786	-0.00074795	-1.1613	-0.0005502	473.7890157855221	28.483	0.16889	28.475	28.451	28.62	-0.0083504	1320	49	0.824661	0.029543579	0.8231416	335.12152	0	12.005798						244	8	4	NaN	NaN	NaN	0.087315	1	6844	6844		67.154	5.883	1	55366			13551	1815	7807	7971	10726	10726					0.08979252173844543
LFDDALVLL	9	Unmodified	_LFDDALVLL_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENST00000431015.5_2_3:46722577-46730936:-|nuORF	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5819247587	1	1018.58192	1017.57465	1.7791	0.0018121	1.6461	0.0016767	3.4252	0.0034888	1018.5819262384492	37.458	0.16859	37.458	37.386	37.554	0	126	73	1.544062	0.042452693	1.544062	313.41986	0	8.617249						273	8	3	NaN	NaN	NaN	0.03623	1	9286	9286		52.758	16.172	1	25178			13552	5099	7808	7972	10727	10727					0.06656395388563396
LFDDALVLL	9	Unmodified	_LFDDALVLL_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENST00000431015.5_2_3:46722577-46730936:-|nuORF	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5819247587	1	1018.58192	1017.57465	1.4978	0.0015257	-0.04683	-4.77E-05	1.451	0.001478	1018.5816454258496	37.479	0.16851	37.482	37.41	37.579	0.0028229	123	55	1.5458313	0.031846285	1.5443119	313.77902	0	6.4642944						157	8	2	NaN	NaN	NaN	0.02781	1	9107	9107		61.977	9.2184	1	18750			13553	5099	7808	7972	10728	10728					0.06656395388563396
LFDDIDHNM	9	Oxidation (M)	_LFDDIDHNM(Oxidation (M))_		LFDDIDHNM(1)		LFDDIDHNM(50)	0	0	1		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2398635652	2	568.239864	1134.46517	1.9473	0.0011065	-1.4062	-0.00079905	0.54109	0.00030747	568.2390116365127	19.9	0.12024	19.9	19.852	19.972	0	1260	43	0.8615505	0.025791943	0.8615505	349.276	0	10.456177						127	6	3	NaN	NaN	NaN	0.041983	1	14243	14243		50.315	25.354	1	14384			13554	53	7809	7973	10729	10729		1			-0.09667978293077795
LFDDIDHNM	9	Oxidation (M)	_LFDDIDHNM(Oxidation (M))_		LFDDIDHNM(1)		LFDDIDHNM(53)	0	0	1		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2398635652	2	568.239864	1134.46517	1.3328	0.00075736	-0.78171	-0.0004442	0.5511	0.00031316	568.2396756304026	19.9	0.12032	19.885	19.861	19.982	-0.014141	1260	37	0.8615505	0.022109807	0.8600311	349.276	0	8.963409						138	6	4	NaN	NaN	NaN	0.03533	1	13786	13786		53.14	21.579	1	14169			13555	53	7809	7973	10730	10730		1			-0.09667978293077795
LFDGCIIL	8	Unmodified	_LFDGCIIL_					0	0	0			REV__ENST00000558380.1_1_15:65112205-65113645:-|nuORF	REV__ENST00000558380.1_1_15:65112205-65113645:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.2436893453501	2	447.243689	892.472826	0.94648	0.00042331	-9.1571	-0.0040954	-8.2106	-0.0036721	447.2400315611223	20.67	0.1206	20.656	20.608	20.728	-0.014086	1356	37	0.8024889	0.022186518	0.8009695	326.38916	0	9.023712						94	6	2	NaN	NaN	NaN	0.80692	1	5843	5843		8.2903	2.2	1	9692.8	+		13556	9797	7810	7974	10731	10731					0.02228825765178044
LFDGCIIL	8	Unmodified						0	0	0			REV__ENST00000558380.1_1_15:65112205-65113645:-|nuORF	REV__ENST00000558380.1_1_15:65112205-65113645:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	447.243689	892.472826	0.94648	0.00042331	-9.1571	-0.0040954	-8.2106	-0.0036721	447.2400315611223	20.67	0.1206	20.656	20.608	20.728	-0.014086	1356	37	0.8024889	0.022186518	0.8009695	326.38916		9.023712	0.0051678	-0.00048516	0.00016477	NaN	8.2903	94	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9692.8	+		13557	9797	7810	7974							0.02228825765178044
LFDGDKELL	9	Unmodified	_LFDGDKELL_					0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2793146892001	2	525.279315	1048.54408	1.5132	0.00079483	-2.2343	-0.0011737	-0.72119	-0.00037883	525.2783438715076	23.754	0.096397	23.754	23.706	23.803	0	1275	67	0.85233563	0.040569723	0.85233563	345.88	0	16.463287						188	5	3	NaN	NaN	NaN	0.29341	1	10574	10574		19.336	1.1029	1	25263	+		13558	9972	7811	7975	10732	10732					0.02174617003538515
LFDGDKELL	9	Unmodified						0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.279315	1048.54408	1.5132	0.00079483	-2.2343	-0.0011737	-0.72119	-0.00037883	525.2783438715076	23.754	0.096397	23.754	23.706	23.803	0	1275	67	0.85233563	0.040569723	0.85233563	345.88		16.463287	-0.0053552	-0.00028153	0.00075972	NaN	19.336	188	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25263	+		13559	9972	7811	7975							0.02174617003538515
LFDGLAVL	8	Unmodified	_LFDGLAVL_					0	0	0			REV__ENSG00000087448|ENST00000381271|KLHL42	REV__ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.4923814699001	1	847.492381	846.485105	0.8969	0.00076012	0.40675	0.00034472	1.3037	0.0011048	847.4923569297149	34.516	0.12061	34.515	34.467	34.587	-0.0006485	402	73	1.3804773	0.042892337	1.3789579	280.97086	0	8.72995						195	6	3	NaN	NaN	NaN	0.40747	1	5216	5216		36.036	0	1	24552	+		13560	8698	7812	7976	10733	10733					0.055721854998637355
LFDGLAVL	8	Unmodified						0	0	0			REV__ENSG00000087448|ENST00000381271|KLHL42	REV__ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	847.492381	846.485105	1.7539	0.0014864	-1.3717	-0.0011625	0.38224	0.00032395	847.4914395504802	34.517	0.12066	34.517	34.493	34.614	0	402	70	1.3804773	0.041103005	1.3804773	280.97086		8.365753	0.00096601	-0.00072739	0.00075972	NaN	36.036	198	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24182	+		13561	8698	7812	7976							0.055721854998637355
LFDGLAVL	8	Unmodified						0	0	0			REV__ENSG00000087448|ENST00000381271|KLHL42	REV__ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	847.492381	846.485105	0.8969	0.00076012	0.40675	0.00034472	1.3037	0.0011048	847.4923569297149	34.516	0.12061	34.515	34.467	34.587	-0.0006485	402	73	1.3804773	0.042892337	1.3789579	280.97086		8.72995	-0.00096601	0.00077981	-0.00075972	NaN	36.036	195	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24552	+		13562	8698	7812	7976							0.055721854998637355
LFDHAVSKF	9	Unmodified	_LFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2821917291501	2	532.282192	1062.54983	1.9494	0.0010376	-1.8163	-0.0009668	0.13308	7.0837E-05	532.2810142443301	19.132	0.09597	19.132	19.084	19.18	0	1287	49	0.8449601	0.029508412	0.8449601	342.82843	0	11.972565						157	5	3	NaN	NaN	NaN	0.026267	1	11238	11238		63.995	22.21	1	35028			13563	729	7813	7977	10734	10734					0.021057603058579843
LFDIQNTLF	9	Unmodified	_LFDIQNTLF_					0	0	0			REV__ENST00000501271.2_1_12:122757424-122758769:-|nuORF	REV__ENST00000501271.2_1_12:122757424-122758769:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7951319289	2	555.795132	1109.57571	1.4376	0.00079899	-8.8579	-0.0049232	-7.4204	-0.0041242	555.7898445311837	21.73	0.12046	21.73	21.633	21.754	0	1233	61	0.87812483	0.036821842	0.87812483	356.0912	0	14.931732						164	6	2	NaN	NaN	NaN	0.27507	1	13255	13255		20.513	1.1769	1	30632	+		13564	12517	7814	7978	10735	10735					0.025306097574684827
LFDIQNTLF	9	Unmodified						0	0	0			REV__ENST00000501271.2_1_12:122757424-122758769:-|nuORF	REV__ENST00000501271.2_1_12:122757424-122758769:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.795132	1109.57571	1.4376	0.00079899	-8.8579	-0.0049232	-7.4204	-0.0041242	555.7898445311837	21.73	0.12046	21.73	21.633	21.754	0	1233	61	0.87812483	0.036821842	0.87812483	356.0912		14.931732	0	0	0	NaN	20.513	164	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30632	+		13565	12517	7814	7978							0.025306097574684827
LFDITGQDF	9	Unmodified	_LFDITGQDF_					0	0	0		SETX-EIF3B|1|fusion;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX-EIF3B|1|fusion	SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5044027192	1	1055.5044	1054.49713	2.3186	0.0024473	0.64115	0.00067674	2.9597	0.003124	1055.5055448074218	30.366	0.21716	30.366	30.27	30.487	0	156	124	1.5263584	0.07267356	1.5263584	309.6812	0	14.744659						659	10	4	NaN	NaN	NaN	7.4888E-36	1	10827	10827		187.45	78.914	1	191710			13566	1630	7815	7979	10736	10736					-0.027942425476112476
LFDITGQDF	9	Unmodified	_LFDITGQDF_					0	0	0		SETX-EIF3B|1|fusion;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX-EIF3B|1|fusion	SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5044027192	1	1055.5044	1054.49713	1.5596	0.0016462	0.86793	0.0009161	2.4275	0.0025623	1055.5051339730069	30.341	0.21715	30.335	30.263	30.48	-0.0064106	156	124	1.5263584	0.07266593	1.5248389	309.6812	0	14.743103						704	10	4	NaN	NaN	NaN	4.3435E-18	1	10599	10599		160.77	62.922	1	199690			13567	1630	7815	7979	10737	10737					-0.027942425476112476
LFDLGGQYL	9	Unmodified	_LFDLGGQYL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5302235392	1	1025.53022	1024.52295	1.5978	0.0016386	-0.52794	-0.00054142	1.0699	0.0010972	1025.5297293821961	31.621	0.21725	31.621	31.573	31.79	0	108	106	1.5546752	0.061926723	1.5546752	315.54556	0	12.569						330	10	2	NaN	NaN	NaN	0.032826	1	9555	9555		55.413	18.111	1	83374			13568	5177	7816	7980	10738	10738					0.011666516946661432
LFDLGGQYL	9	Unmodified	_LFDLGGQYL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.5302235392	1	1025.53022	1024.52295	0.86964	0.00089184	0.23576	0.00024178	1.1054	0.0011336	1025.5300946669465	31.62	0.21726	31.616	31.568	31.785	-0.0044155	105	100	1.5564433	0.058387995	1.5549239	315.90445	0	11.850769						319	10	2	NaN	NaN	NaN	0.0073225	1	9374	9374		97.85	45.07	1	84611			13569	5177	7816	7980	10739	10739					0.011666516946661432
LFDLLESQ	8	Unmodified	_LFDLLESQ_					0	0	0			REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.7529327632	2	482.752933	963.491313	1.5273	0.00073732	-1.1334	-0.00054714	0.39394	0.00019017	482.75289721400077	20.742	0.096359	20.728	20.704	20.801	-0.014088	1347	37	0.8080346	0.02218169	0.8065152	328.27744	0	9.011688						119	5	3	NaN	NaN	NaN	0.65542	1	7282	7282		21.835	0	1	16574	+		13570	10066	7817	7981	10740	10740					0.008106589407248066
LFDPNFEY	8	Unmodified	_LFDPNFEY_					0	0	0			REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF	REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.4672889314	1	1044.46729	1043.46001	1.397	0.0014591	-2.0811	-0.0021736	-0.68407	-0.00071449	1044.4657566288581	26.529	0.19306	26.518	26.373	26.566	-0.010645	231	106	1.4820169	0.0621109	1.4804975	300.72592	0	12.6033325						204	9	2	NaN	NaN	NaN	0.80726	1	10140	10140		8.2448	0.65458	1	21998	+		13571	9771	7818	7982	10741	10741					-0.05997914093381951
LFDPSLFF	8	Unmodified	_LFDPSLFF_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|264|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|264|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|264|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.25511131140007	2	493.255111	984.49567	1.6782	0.00082779	5.9212	0.0029207	7.5994	0.0037484	493.2576230859076	21.609	0.072304	21.609	21.585	21.657	0	1305	49	0.83389086	0.029533982	0.83389086	338.68024	0	11.995056						112	4	3	NaN	NaN	NaN	0.72043	1	8030	8030		17.78	5.1924	1	16877			13572	7856	7819	7983	10742	10742					0.0028016815430191855
LFDSVIHL	8	Unmodified	_LFDSVIHL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.26601034870004	2	472.26601	942.517468	1.4787	0.00069833	-2.8021	-0.0013234	-1.3235	-0.00062503	472.2644162623439	28.146	0.072382	28.146	28.122	28.194	0	1314	40	0.8283535	0.023997664	0.8283535	336.6377	0	9.752502						70	4	2	NaN	NaN	NaN	0.46176	1	6886	6886		33.137	2.3458	1	8760.9			13573	2387	7820	7984	10743	10743					0.04390972902854173
LFDVVVFL	8	Unmodified	_LFDVVVFL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.5549817267002	1	951.554982	950.547705	0.87215	0.0008299	0.35481	0.00033762	1.227	0.0011675	951.5545883810171	39.911	0.1444	39.911	39.887	40.032	0	231	40	1.4820169	0.02308929	1.4820169	301.10916	0	4.6911926						125	7	2	NaN	NaN	NaN	0.35933	1	7104	7104		38.608	5.4709	1	8597.3			13574	4293	7821	7985	10744	10744					0.07045331568053825
LFDVVVFL	8	Unmodified	_LFDVVVFL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.5549817267002	1	951.554982	950.547705	1.3751	0.0013085	-0.057182	-5.4412E-05	1.3179	0.0012541	951.5550623030009	39.909	0.12056	39.915	39.867	39.988	0.0060463	231	43	1.4820169	0.024861455	1.4804975	301.1092	0	5.051239						105	6	2	NaN	NaN	NaN	0.10499	1	6973	6973		63.31	15.989	1	8312.5			13575	4293	7821	7985	10745	10745					0.07045331568053825
LFDYISEC	8	Unmodified	_LFDYISEC_					0	0	0		nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK	nc|ENSG00000106633|P35557-3|GCK	nc|ENSG00000106633|P35557-3|GCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.21786852534996	2	495.217869	988.421184	1.4047	0.00069565	-1.5382	-0.00076174	-0.13344	-6.6084E-05	495.21789043136346	34.3	0.096451	34.3	34.276	34.372	0	1341	37	0.8117308	0.022174478	0.8117308	329.66202	0	9.005554						131	5	3	NaN	NaN	NaN	0.76633	1	8151	8151		13.737	0	1	17582			13576	1611	7822	7986	10746	10746					-0.07348962719413521
LFEASKAD	8	Unmodified	_LFEASKAD_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.72417532375	2	440.724175	879.433798	1.0196	0.00044937	-9.8626	-0.0043467	-8.843	-0.0038973	440.7198431069277	24.019	0.21715	24.019	23.923	24.14	0	1323	31	0.8228144	0.018466711	0.8228144	334.73114	0	7.5124817						119	10	2	NaN	NaN	NaN	0.83913	1	5786	5786		3.9685	0.39529	1	7776.6			13577	4061	7823	7987	10747	10747					-0.010741832648591298
LFEDALVL	8	Unmodified	_LFEDALVL_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.5135108425001	1	919.513511	918.506234	1.0762	0.00098955	0.83422	0.00076707	1.9104	0.0017566	919.5143261771258	37.65	0.26471	37.65	37.578	37.843	0	318	100	1.4304334	0.05881095	1.4304334	290.77344	0	11.954895						396	12	3	NaN	NaN	NaN	0.40747	1	6391	6391		36.036	4.4753	1	81498			13578	1623	7824	7988	10748	10748					0.04372150808717379
LFEIPPDLV	9	Unmodified	_LFEIPPDLV_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5819247586999	1	1042.58192	1041.57465	1.5718	0.0016387	-1.9918	-0.0020766	-0.41999	-0.00043788	1042.5794514720342	34.998	0.24119	34.998	34.829	35.07	-4.5776E-05	120	130	1.5476005	0.076081395	1.5460811	314.04132	0	15.438568						653	11	2	NaN	NaN	NaN	0.056143	1	10081	10081		44.302	0	1	230460			13579	355	7825	7989	10749	10749					0.05552395388554032
LFELRLLD	8	Unmodified	_LFELRLLD_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1;AP5M1|p.E92Rfs*12|1|0.32|ENSG00000053770|chr14:57274440-57274441|-/A|frameshift_variant	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.593158147	1	1018.59316	1017.58588	1.4818	0.0015094	-11.062	-0.011267	-9.5798	-0.0097579	1018.5815519097812	35.215	0.16901	35.215	35.167	35.336	-4.5776E-05	150	94	1.5299006	0.0549134	1.5283811	310.54532	0	11.146515						299	8	2	NaN	NaN	NaN	0.098732	1	9106	9106		64.55	5.9508	1	82242			13580	585	7826	7990	10750	10750					0.07779217482709555
LFEMRLSR	8	Unmodified	_LFEMRLSR_					0	0	0			REV__ENST00000157600.7_2_3:8609452-8609641:+|nuORF	REV__ENST00000157600.7_2_3:8609452-8609641:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2894938325	2	526.289494	1050.56443	2.0469	0.0010772	-11.511	-0.0060581	-9.464	-0.0049808	526.2834301832995	25.925	0.43444	25.914	25.769	26.203	-0.0116	1221	109	0.885486	0.06630796	0.88396657	359.3236	0	26.907257						734	19	3	NaN	NaN	NaN	0.43738	1	10435	10435		34.439	6.5781	1	92940	+		13581	11447	7827	7991	10751	10751					0.04117509182333379
LFFDGLCEMTF	11	Unmodified	_LFFDGLCEMTF_					0	0	0		ENST00000545186.1_1_6:163483196-163516415:+|nuORF;ENST00000541974.5_1_6:163418555-163736016:+|nuORF;ENSG00000112530|ENST00000366888|PACRG;PACRG|p.F280Yfs*19|1|0.08|ENSG00000112530|chr6:163314934-163314935|-/ACACAGTC|frameshift_variant;nc|ENSG00000112530|Q96M98|PACRG	ENST00000545186.1_1_6:163483196-163516415:+|nuORF	ENST00000545186.1_1_6:163483196-163516415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.7934173693999	2	661.793417	1321.57228	0.87915	0.00058181	-7.3912	-0.0048915	-6.5121	-0.0043097	661.7890047915962	31.525	0.24135	31.525	31.452	31.694	0	1125	61	0.9442611	0.036663115	0.9442611	382.15576	0	14.838074						306	11	3	NaN	NaN	NaN	0.688	1	19124	19124		8.2448	1.2605	1	48561			13582	1876	7828	7992	10752	10752					-0.07564144403090722
LFFGGGVA	8	Unmodified	_LFFGGGVA_					0	0	0			REV__ENST00000331369.5_1_2:84517942-84518395:+|nuORF	REV__ENST00000331369.5_1_2:84517942-84518395:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4086518405	1	767.408652	766.401375	1.3362	0.0010254	-8.8487	-0.0067906	-7.5125	-0.0057651	767.4017126540062	32.828	0.096489	32.828	32.78	32.876	0	510	40	1.316029	0.023316503	1.316029	268.3004	0	4.7535706						71	5	2	NaN	NaN	NaN	0.84876	1	4306	4306		0.39566	0	1	4561.3	+		13583	10399	7829	7993	10753	10753					0.00883074122805283
LFFLLIGRW	9	Unmodified	_LFFLLIGRW_					0	0	0		ENST00000428226.5_3_2:220092732-220094285:-|nuORF	ENST00000428226.5_3_2:220092732-220094285:-|nuORF	ENST00000428226.5_3_2:220092732-220094285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8500445393502	2	582.850045	1163.68554	1.7561	0.0010236	5.206	0.0030343	6.9621	0.0040579	582.8528601221725	27.471	0.048265	27.471	27.471	27.519	0	1128	31	0.9424274	0.018337488	0.9424274	381.94858	0	7.4318542						44	3	2	NaN	NaN	NaN	0.61413	1	15281	15281		4.9097	0	1	4423.4			13584	6959	7830	7994	10754	10754					0.11024079887329208
LFFLSGGDVP	10	Unmodified	_LFFLSGGDVP_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2765750350001	2	526.276575	1050.5386	2.0948	0.0011024	-6.7508	-0.0035528	-4.656	-0.0024504	526.2736779693619	18.292	0.14402	18.292	18.292	18.436	0	1293	31	0.84127116	0.01844871	0.84127116	341.38162	0	7.4863586						71	7	2	NaN	NaN	NaN	0.53991	1	10648	10648		17.799	4.3359	1	5119.2			13585	5555	7831	7995	10755	10755					0.015349382117165078
LFFMRPQM	8	Unmodified	_LFFMRPQM_					0	0	0			REV__FGD6|p.R1101G|1|0.19|ENSG00000180263|chr12:95107595-95107595|G/C|missense_variant	REV__FGD6|p.R1101G|1|0.19|ENSG00000180263|chr12:95107595-95107595|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.18223583426663	3	357.182236	1068.52488	1.7693	0.00063196	-2.121	-0.00075757	-0.35169	-0.00012562	357.18178364097633	16.35	0.11994	16.35	16.326	16.446	0	1491	31	0.7190863	0.018579185	0.7190863	437.59927	0	11.306335						92	6	2	NaN	NaN	NaN	0.80071	1	11490	11490		6.2502	1.7069	1	9083	+		13586	10826	7832	7996	10756	10756					-0.006643340927439567
LFFNNQTR	8	Unmodified	_LFFNNQTR_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5319548736998	1	1039.53195	1038.52468	1.0368	0.0010778	-6.9511	-0.0072259	-5.9143	-0.0061481	1039.5247416772224	30.028	0.24131	30.021	29.901	30.142	-0.0064106	147	85	1.5316714	0.049601793	1.530152	310.82092	0	10.065643						465	11	3	NaN	NaN	NaN	0.50906	1	9933	9933		30.61	2.8213	1	53002	+		13587	8846	7833	7997	10757	10757					0.006957055032671633
LFFNNQTR	8	Unmodified						0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1039.53195	1038.52468	1.0368	0.0010778	-6.9511	-0.0072259	-5.9143	-0.0061481	1039.5247416772224	30.028	0.24131	30.021	29.901	30.142	-0.0064106	147	85	1.5316714	0.049601793	1.530152	310.82092		10.065643	-0.00367	0.00079499	-0.00075972	NaN	30.61	465	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53002	+		13588	8846	7833	7997							0.006957055032671633
LFFSHIVAAAV	11	Unmodified	_LFFSHIVAAAV_					0	0	0		ENST00000405201.5_1_12:124809292-124809376:-|nuORF	ENST00000405201.5_1_12:124809292-124809376:-|nuORF	ENST00000405201.5_1_12:124809292-124809376:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8345914404	2	587.834591	1173.65463	1.6201	0.00095237	-0.53364	-0.00031369	1.0865	0.00063868	587.8341111596254	34.421	0.1448	34.421	34.396	34.541	0	1173	40	0.91489893	0.023881197	0.91489893	370.7549	0	9.677643						151	7	3	NaN	NaN	NaN	0.44477	1	15615	15615		20.449	0	1	15604			13589	6843	7834	7998	10758	10758					0.07474881782400189
LFFTVLLS	8	Unmodified	_LFFTVLLS_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.28112909665	2	470.281129	938.547705	1.1296	0.00053121	-5.2417	-0.0024651	-4.1122	-0.0019339	470.27866038611967	21.416	0.096214	21.416	21.344	21.44	0	1344	37	0.8098828	0.022176862	0.8098828	329.1513	0	9.013123						83	5	2	NaN	NaN	NaN	0.74229	1	6794	6794		16.417	4.6778	1	7864.2			13590	5885	7835	7999	10759	10759					0.0759733156803577
LFFYSHACN	9	Unmodified	_LFFYSHACN_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K;ENST00000563555.1_1_16:22268974-22274610:+|nuORF	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.24475197785	2	551.244752	1100.47495	1.4092	0.00077684	8.0298	0.0044264	9.4391	0.0052032	551.2494616673392	28.774	0.31372	28.774	28.629	28.943	0	1272	115	0.854179	0.06997663	0.854179	346.41592	0	28.379303						485	14	3	NaN	NaN	NaN	0.33629	1	12849	12849		16.584	1.1215	1	91112			13591	1430	7836	8000	10760	10760					-0.07126745497043885
LFGGCHHQ	8	Unmodified	_LFGGCHHQ_					0	0	0			REV__ENSG00000185198|ENST00000329267|PRSS57	REV__ENSG00000185198|ENST00000329267|PRSS57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.70305433865	2	449.703054	897.391556	1.214	0.00054595	4.9137	0.0022097	6.1277	0.0027557	449.7054021011453	16.47	0.11984	16.47	16.446	16.566	0	1449	37	0.74507743	0.022261143	0.74507743	303.01346	0	9.053345						98	6	2	NaN	NaN	NaN	0.8439	1	6017	6017		3.1533	0	1	11285	+		13592	10951	7837	8001	10761	10761					-0.06124437154221596
LFGGCHHQ	8	Unmodified						0	0	0			REV__ENSG00000185198|ENST00000329267|PRSS57	REV__ENSG00000185198|ENST00000329267|PRSS57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	449.703054	897.391556	1.214	0.00054595	4.9137	0.0022097	6.1277	0.0027557	449.7054021011453	16.47	0.11984	16.47	16.446	16.566	0	1449	37	0.74507743	0.022261143	0.74507743	303.01346		9.053345	-0.015908	-0.00085722	0.00075972	NaN	3.1533	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11285	+		13593	10951	7837	8001							-0.06124437154221596
LFGGCHHQ	8	Unmodified						0	0	0			REV__ENSG00000185198|ENST00000329267|PRSS57	REV__ENSG00000185198|ENST00000329267|PRSS57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	449.703054	897.391556	1.636	0.0007357	6.267	0.0028183	7.903	0.003554	449.7055616648581	16.515	0.11983	16.502	16.478	16.598	-0.012993	1449	40	0.74507743	0.024117589	0.743558	303.01346		9.808319	0.015908	0.00035994	-0.00075972	NaN	3.1533	110	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10212	+		13594	10951	7837	8001							-0.06124437154221596
LFGGHSSA	8	Unmodified	_LFGGHSSA_					0	0	0		ENST00000263347.11_1_16:89973678-89977643:+|nuORF	ENST00000263347.11_1_16:89973678-89977643:+|nuORF	ENST00000263347.11_1_16:89973678-89977643:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.3733289667	1	775.373329	774.366053	1.9098	0.0014808	-9.4994	-0.0073656	-7.5896	-0.0058848	775.3663277217022	29.908	0.19304	29.908	29.86	30.053	0	519	61	1.310647	0.035888672	1.310647	267.15488	0	7.3153687						186	9	2	NaN	NaN	NaN	0.81807	1	4420	4420		6.794	0	1	23349			13595	6316	7838	8002	10762	10762					-0.030155884050032
LFGGVAGV	8	Unmodified	_LFGGVAGV_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.4086518405	1	719.408652	718.401375	1.0557	0.00075947	-2.9919	-0.0021524	-1.9362	-0.0013929	719.4059733933321	28.025	0.26545	28.016	27.871	28.137	-0.0089779	672	94	1.2188909	0.05595255	1.2173715	248.78853	0	11.420502						374	12	3	NaN	NaN	NaN	0.84651	1	3503	3503		1.6704	0	1	73175	+		13596	10330	7839	8003	10763	10763					0.03091074122801274
LFGHQSCSD	9	Unmodified	_LFGHQSCSD_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4094564765	1	993.409456	992.40218	0.036903	3.666E-05	5.6704	0.005633	5.7073	0.0056697	993.415167737559	48.209	0.11988	48.214	48.142	48.262	0.004818	240	52	1.4766881	0.030203342	1.4751687	299.84564	0	6.1328735						107	6	2	NaN	NaN	NaN	0.61413	1	8128	8128		4.9097	1.7564	1	7301.1	+		13597	10946	7840	8004	10764	10764					-0.09432499290448959
LFGKTWRK	8	Unmodified	_LFGKTWRK_					0	0	0		ENST00000447750.6_1_X:153671038-153671296:+|nuORF	ENST00000447750.6_1_X:153671038-153671296:+|nuORF	ENST00000447750.6_1_X:153671038-153671296:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.3085438654001	2	518.308544	1034.60253	1.447	0.00075001	7.0757	0.0036674	8.5228	0.0044174	518.3118625291618	26.94	0.07238	26.94	26.891	26.964	0	1254	40	0.8652351	0.023943245	0.8652351	351.17593	0	9.717926						67	4	3	NaN	NaN	NaN	0.72013	1	9991	9991		17.799	3.7574	1	5980.7			13598	7029	7841	8005	10765	10765					0.08661763159329894
LFGKTWRK	8	Unmodified						0	0	0		ENST00000447750.6_1_X:153671038-153671296:+|nuORF	ENST00000447750.6_1_X:153671038-153671296:+|nuORF	ENST00000447750.6_1_X:153671038-153671296:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.308544	1034.60253	1.133	0.00058723	5.6748	0.0029413	6.8077	0.0035285	518.3115948723846	27.011	0.1207	27.001	26.953	27.074	-0.010126	1251	46	0.8670771	0.027632773	0.8655577	351.92355		11.215424	0.030732	-0.00079156	0.00016127	NaN	17.799	123	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10542			13599	7029	7841	8005							0.08661763159329894
LFGLVSLG	8	Unmodified	_LFGLVSLG_					0	0	0			REV__ENST00000576209.5_1_17:79477313-79477361:-|nuORF	REV__ENST00000576209.5_1_17:79477313-79477361:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.24454662510004	2	403.244547	804.47454	0.85426	0.00034448	-2.7582	-0.0011122	-1.904	-0.00076777	403.24299987209974	24.502	0.072313	24.502	24.478	24.55	0	1395	43	0.7784366	0.02592069	0.7784366	317.13065	0	10.559967						89	4	3	NaN	NaN	NaN	0.55881	1	4803	4803		27.861	0	1	12389	+		13600	12849	7842	8006	10766	10766					0.0644820284543357
LFGLVSLG	8	Unmodified						0	0	0			REV__ENST00000576209.5_1_17:79477313-79477361:-|nuORF	REV__ENST00000576209.5_1_17:79477313-79477361:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	403.244547	804.47454	0.85426	0.00034448	-2.7582	-0.0011122	-1.904	-0.00076777	403.24299987209974	24.502	0.072313	24.502	24.478	24.55	0	1395	43	0.7784366	0.02592069	0.7784366	317.13065		10.559967	-0.0058101	5.5081E-05	0.00075972	NaN	27.861	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12389	+		13601	12849	7842	8006							0.0644820284543357
LFGTITEVL	9	Unmodified	_LFGTITEVL_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945001	1	992.566275	991.558998	1.7151	0.0017023	0.02576	2.5568E-05	1.7408	0.0017279	992.5665878732118	32.369	0.48267	32.365	32.244	32.727	-0.0037613	189	196	1.5068626	0.11547148	1.5053432	305.97626	0	23.447083						1361	21	4	NaN	NaN	NaN	0.078597	1	8123	8123		38.918	0	1	478070	+		13602	8439	7843	8007	10767	10767					0.062881088715244
LFHGSLDPS	9	Unmodified	_LFHGSLDPS_					0	0	0			REV__nc|ENSG00000122376|Q86V20|SHLD2	REV__nc|ENSG00000122376|Q86V20|SHLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.4785223197001	1	972.478522	971.471246	1.5314	0.0014893	0.71161	0.00069202	2.243	0.0021813	972.4792539973248	21.633	0.14434	21.619	21.595	21.74	-0.013895	318	82	1.4304334	0.048118114	1.428914	290.53925	0	9.773376						170	7	2	NaN	NaN	NaN	0.65818	1	7502	7502		2.7852	0	1	15720	+		13603	9341	7844	8008	10768	10768					-0.01563091999230437
LFHREESEYQ	10	Unmodified	_LFHREESEYQ_					0	0	0		ENST00000358731.8_2_5:70754407-70754644:+|nuORF	ENST00000358731.8_2_5:70754407-70754644:+|nuORF	ENST00000358731.8_2_5:70754407-70754644:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.54220287379997	3	446.542203	1336.60478	1.2967	0.00057904	-5.0769	-0.002267	-3.7801	-0.001688	446.5396590858744	25.322	0.14475	25.322	25.274	25.419	0	1545	31	0.68561107	0.018615544	0.68561107	416.16302	0	11.299561						126	7	3	NaN	NaN	NaN	0.75017	1	19354	19354		4.6175	0.36856	1	12938			13604	6587	7845	8009	10769	10769					-0.05005897684191041
LFHSCQLAL	9	Unmodified	_LFHSCQLAL_					0	0	0			REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5342630595999	1	1031.53426	1030.52699	2.145	0.0022126	-0.072123	-7.4397E-05	2.0729	0.0021382	1031.533624201233	25.901	0.21717	25.901	25.805	26.022	0	171	85	1.5174994	0.049654484	1.5174994	307.97632	0	10.077362						251	10	2	NaN	NaN	NaN	0.39244	1	9799	9799		14.042	0	1	24127	+		13605	10521	7846	8010	10770	10770					0.012944179167106995
LFIALVHVE	9	Unmodified	_LFIALVHVE_					0	0	0		ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.8105850278502	2	520.810585	1039.60662	1.1226	0.00058467	0.7883	0.00041056	1.9109	0.00099522	520.811251519552	29.4	0.14477	29.393	29.344	29.489	-0.0077209	1233	67	0.87812483	0.040490866	0.8766054	356.385	0	16.433105						275	7	4	NaN	NaN	NaN	0.42773	1	9993	9993		12.588	0	1	44074			13606	5221	7847	8011	10771	10771					0.08839807862386806
LFIDEEQLIYE	11	Unmodified	_LFIDEEQLIYE_					0	0	0			REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3532079138	2	706.353208	1410.69186	0.98794	0.00069783	-10.643	-0.0075176	-9.6548	-0.0068197	706.3449106313675	29.305	0.12065	29.305	29.28	29.401	0	1074	49	0.9754029	0.029283106	0.9754029	394.50113	0	11.843536						157	6	3	NaN	NaN	NaN	0.47586	1	20152	20152		19.336	1.5561	1	31767	+		13607	13577	7848	8012	10772	10772					0.0029446374685448973
LFIDEEQLIYE	11	Unmodified	_LFIDEEQLIYE_					0	0	0			REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3532079138	2	706.353208	1410.69186	0.80021	0.00056523	-8.9316	-0.0063089	-8.1314	-0.0057437	706.3472791750571	29.328	0.21718	29.32	29.272	29.489	-0.0077209	1074	43	0.9754029	0.025619924	0.97388345	394.50113	0	10.361969						202	10	4	NaN	NaN	NaN	0.20314	1	19200	19200		30.035	1.1398	1	34501	+		13608	13577	7848	8012	10773	10773					0.0029446374685448973
LFIDEEQLIYE	11	Unmodified						0	0	0			REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	706.353208	1410.69186	0.98794	0.00069783	-10.643	-0.0075176	-9.6548	-0.0068197	706.3449106313675	29.305	0.12065	29.305	29.28	29.401	0	1074	49	0.9754029	0.029283106	0.9754029	394.50113		11.843536	-0.0078203	-0.0016192	0.00075972	NaN	30.035	157	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31767	+		13609	13577	7848	8012							0.0029446374685448973
LFIDEEQLIYE	11	Unmodified						0	0	0			REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	706.353208	1410.69186	0.80021	0.00056523	-8.9316	-0.0063089	-8.1314	-0.0057437	706.3472791750571	29.328	0.21718	29.32	29.272	29.489	-0.0077209	1074	43	0.9754029	0.025619924	0.97388345	394.50113		10.361969	0.0078203	0.00079817	-0.00075972	NaN	30.035	202	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34501	+		13610	13577	7848	8012							0.0029446374685448973
LFIESGEPEK	10	Unmodified	_LFIESGEPEK_					0	0	0		ENST00000332647.5_1_X:92929206-92953480:+|nuORF	ENST00000332647.5_1_X:92929206-92953480:+|nuORF	ENST00000332647.5_1_X:92929206-92953480:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7953288941501	2	574.795329	1147.5761	1.1973	0.00068818	1.7474	0.0010044	2.9446	0.0016926	574.796260290106	35.868	0.096485	35.868	35.82	35.916	0	1182	43	0.9093879	0.025719583	0.9093879	368.61887	0	10.425415						97	5	3	NaN	NaN	NaN	0.5917	1	14722	14722		15.463	0	1	12066			13611	6508	7849	8013	10774	10774					0.008219846866722946
LFIGTSFLL	9	Unmodified	_LFIGTSFLL_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5920955145001	1	1010.5921	1009.58482	1.2848	0.0012984	2.3191	0.0023437	3.604	0.0036421	1010.5943622650021	37.097	0.072277	37.097	37.048	37.121	0	117	55	1.5493695	0.031846285	1.5493695	314.53046	0	6.4649963						77	4	2	NaN	NaN	NaN	0.02781	1	8973	8973		61.977	9.2184	1	5842.9			13612	3951;5191	7850	8014	10775	10775					0.080410031138058
LFIGTSFLL	9	Unmodified						0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1010.5921	1009.58482	1.713	0.0017312	-0.38266	-0.00038672	1.3303	0.0013444	1010.5913947311308	37.07	0.096321	37.072	37.048	37.145	0.0022469	117	46	1.5493695	0.026531577	1.54785	314.53046		5.386078	-0.012116	-0.0011777	-0.00075972	NaN	61.977	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4691			13613	3951;5191	7850	8014							0.080410031138058
LFILWTHHHS	10	Unmodified	_LFILWTHHHS_					0	0	0			REV__ENST00000366334.3_1_11:73819029-73820255:-|nuORF	REV__ENST00000366334.3_1_11:73819029-73820255:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8407394508	2	645.840739	1289.66693	0.3194	0.00020628	-7.9333	-0.0051236	-7.6138	-0.0049173	646.3381324052184	48.209	0.07198	48.214	48.166	48.238	0.004818	1107	25	0.9552588	0.014658928	0.9537394	386.70566	0	5.9341736						93	4	4	NaN	NaN	NaN	0.77421	1	17765	17765		1.9246	0.22244	1	4953.3	+		13614	11852	7851	8015	10776	10776					0.033679182454534384
LFIPSSKLLFL	11	Unmodified	_LFIPSSKLLFL_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.3970245217001	2	639.397025	1276.7795	1.0714	0.00068502	-4.0328	-0.0025785	-2.9614	-0.0018935	639.3944321531211	33.335	0.096539	33.335	33.287	33.383	0	1089	34	0.96624947	0.020144105	0.96624947	391.19666	0	8.155548						64	5	2	NaN	NaN	NaN	0.56282	1	18361	18361		16.226	3.6561	1	5557.9			13615	3944	7852	8016	10777	10777					0.15217754198943112
LFIQGKLLF	9	Unmodified	_LFIQGKLLF_					0	0	0		ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8366028131001	2	539.836603	1077.65865	1.0654	0.00057517	-1.667	-0.00089991	-0.60155	-0.00032474	539.8360435846442	29.449	0.16892	29.442	29.417	29.586	-0.0070667	1218	58	0.8873258	0.034956157	0.8858064	359.95297	0	14.180328						284	8	4	NaN	NaN	NaN	0.014046	1	11584	11584		80.639	22.039	1	59506			13616	5846	7853	8017	10778	10778					0.12292971276133358
LFIQGKLLF	9	Unmodified						0	0	0		ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.836603	1077.65865	1.5357	0.00082901	-2.3033	-0.0012434	-0.76762	-0.00041439	539.8356798672385	29.425	0.14483	29.425	29.401	29.546	0	1221	58	0.885486	0.034963727	0.885486	359.20667		14.18338	-0.008142	-0.00041386	-0.00016018	NaN	80.639	219	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56432			13617	5846	7853	8017							0.12292971276133358
LFIWPHAG	8	Unmodified	_LFIWPHAG_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.7556128379	2	470.755613	939.496673	1.0076	0.00047433	-1.2319	-0.00057992	-0.22429	-0.00010559	470.7550758760929	20.597	0.072229	20.597	20.573	20.646	0	1344	88	0.8098828	0.053608656	0.8098828	329.14648	0	21.787231						189	4	3	NaN	NaN	NaN	0.83849	1	6812	6812		4.0537	0.085174	1	32507	+		13618	13184	7854	8018	10779	10779					0.024504273138404642
LFIWPHAG	8	Unmodified						0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	470.755613	939.496673	1.0076	0.00047433	-1.2319	-0.00057992	-0.22429	-0.00010559	470.7550758760929	20.597	0.072229	20.597	20.573	20.646	0	1344	88	0.8098828	0.053608656	0.8098828	329.14648		21.787231	-0.0051006	-0.00070629	0.00075972	NaN	4.0537	189	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32507	+		13619	13184	7854	8018							0.024504273138404642
LFIWPHAG	8	Unmodified						0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	470.755613	939.496673	0.034463	1.6224E-05	0.69553	0.00032743	0.73	0.00034365	470.7559739647309	20.622	0.096411	20.608	20.559	20.656	-0.014088	1344	85	0.8098828	0.051757276	0.8083634	329.14648		21.03482	0.0051006	0.0011084	-0.00075972	NaN	4.0537	168	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22764	+		13620	13184	7854	8018							0.024504273138404642
LFKGRTMERS	10	Unmodified	_LFKGRTMERS_					0	0	0			REV__ENSG00000205659|ENST00000555028|LIN52	REV__ENSG00000205659|ENST00000555028|LIN52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.8887684555333	3	408.888768	1223.64448	2.3337	0.00095423	2.6359	0.0010778	4.9696	0.002032	409.2238750144645	17.666	0.071842	17.652	17.628	17.7	-0.013786	1455	25	0.7413668	0.01484561	0.73984736	450.4307	0	9.019714						45	4	2	NaN	NaN	NaN	0.71559	1	16384	16384		3.5945	0.89035	1	3156.1	+		13621	11270	7855	8019	10780	10780					0.041599507855153206
LFKLIREQMLH	11	Unmodified	_LFKLIREQMLH_					0	0	0			REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.4132142896501	2	714.413214	1426.81188	0.92474	0.00066065	-6.8573	-0.004899	-5.9326	-0.0042383	714.4073511145007	20.67	0.096474	20.656	20.632	20.728	-0.014086	1008	37	1.0156195	0.021910429	1.0141001	410.72165	0	8.860657						128	5	3	NaN	NaN	NaN	0.51407	1	19301	19301		17.97	6.7994	1	14021	+		13622	8115	7856	8020	10781	10781					0.11554218330297772
LFKLIREQMLH	11	Unmodified						0	0	0			REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	714.413214	1426.81188	0.9755	0.00069691	-7.4669	-0.0053344	-6.4914	-0.0046375	714.4091896911519	20.67	0.072302	20.67	20.646	20.718	0	1008	40	1.0156195	0.02373755	1.0156195	410.72165		9.599548	0.0068816	-0.00047245	0.00075972	NaN	17.97	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11901	+		13623	8115	7856	8020							0.11554218330297772
LFKLIREQMLH	11	Unmodified						0	0	0			REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	REV__ABCC9|p.G854R|1|0.53|ENSG00000069431|chr12:21852451-21852451|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	714.413214	1426.81188	0.92474	0.00066065	-6.8573	-0.004899	-5.9326	-0.0042383	714.4073511145007	20.67	0.096474	20.656	20.632	20.728	-0.014086	1008	37	1.0156195	0.021910429	1.0141001	410.72165		8.860657	-0.0068816	0.00039845	-0.00075972	NaN	17.97	128	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14021	+		13624	8115	7856	8020							0.11554218330297772
LFKLSLRDE	9	Unmodified	_LFKLSLRDE_					0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8216810304001	2	560.821681	1119.62881	1.7099	0.00095895	-1.1622	-0.0006518	0.54768	0.00030715	560.8208838342066	28.363	0.09647	28.363	28.315	28.412	0	1191	43	0.90387505	0.02573353	0.90387505	366.49283	0	10.434113						86	5	2	NaN	NaN	NaN	0.49999	1	13665	13665		9.6116	3.1817	1	11749	+		13625	11082	7857	8021	10782	10782					0.07377987540144204
LFKLSLRDE	9	Unmodified						0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.821681	1119.62881	1.7099	0.00095895	-1.1622	-0.0006518	0.54768	0.00030715	560.8208838342066	28.363	0.09647	28.363	28.315	28.412	0	1191	43	0.90387505	0.02573353	0.90387505	366.49283		10.434113	-0.0072256	0.00038404	0.0016787	NaN	9.6116	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11749	+		13626	11082	7857	8021							0.07377987540144204
LFKLSLRDE	9	Unmodified						0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.821681	1119.62881	1.1533	0.00064678	-2.0162	-0.0011307	-0.8629	-0.00048393	560.8202551733366	28.387	0.14481	28.378	28.33	28.474	-0.0089779	1194	46	0.902037	0.027570128	0.9005176	365.74756		11.178833	0.0072256	-0.00057378	-0.0016787	NaN	9.6116	113	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12631	+		13627	11082	7857	8021							0.07377987540144204
LFKRKQKWH	9	Unmodified	_LFKRKQKWH_					0	0	0			REV__ENSG00000151090|ENST00000646209|THRB	REV__ENSG00000151090|ENST00000646209|THRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.8801989623	2	635.880199	1269.74584	1.7238	0.0010961	-10.677	-0.0067892	-8.9531	-0.0056931	636.3745280129436	34.324	0.024193	34.324	34.3	34.324	0	1128	34	0.9424274	0.020170152	0.9424274	381.5747	0	8.166595						33	2	2	NaN	NaN	NaN	0.65818	1	18233	18233		2.7852	0.32367	1	2408.2	+		13628	10020	7858	8022	10783	10783					0.12176190270383813
LFKRKQKWH	9	Unmodified						0	0	0			REV__ENSG00000151090|ENST00000646209|THRB	REV__ENSG00000151090|ENST00000646209|THRB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	635.880199	1269.74584	1.7238	0.0010961	-10.677	-0.0067892	-8.9531	-0.0056931	636.3745280129436	34.324	0.024193	34.324	34.3	34.324	0	1128	34	0.9424274	0.020170152	0.9424274	381.5747		8.166595	0.0012441	0.00029566	-0.002907	NaN	2.7852	33	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408.2	+		13629	10020	7858	8022							0.12176190270383813
LFKRKQKWH	9	Unmodified						0	0	0			REV__ENSG00000151090|ENST00000646209|THRB	REV__ENSG00000151090|ENST00000646209|THRB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	635.880199	1269.74584	1.9853	0.0012624	-11.142	-0.0070849	-9.1565	-0.0058224	636.3740929721133	34.323	0.048134	34.322	34.298	34.346	-0.0012474	1116	37	0.94976085	0.022000253	0.9482414	384.54388		8.907562	-0.0012441	-0.00029564	0.002907	NaN	2.7852	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3547.3	+		13630	10020	7858	8022							0.12176190270383813
LFKSLMDRF	9	Unmodified	_LFKSLMDRF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8128017533	2	578.812802	1155.61105	2.0809	0.0012045	3.1763	0.0018385	5.2573	0.003043	578.8146501243525	25.564	0.096445	25.564	25.515	25.612	0	1164	37	0.9204082	0.022033453	0.9204082	373.0551	0	8.930511						102	5	3	NaN	NaN	NaN	0.58159	1	15019	15019		6.2502	2.2817	1	10469			13631	594;13711	7859	8023	10784	10784					0.03946949013629819
LFLAGFLA	8	Unmodified	_LFLAGFLA_					0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.5025522257001	1	851.502552	850.495276	1.6845	0.0014344	1.3221	0.0011258	3.0066	0.0025601	851.5036328660303	28.653	0.072367	28.653	28.653	28.725	0	369	55	1.4001206	0.032124758	1.4001206	284.94742	0	6.5379333						81	4	2	NaN	NaN	NaN	0.81214	1	5396	5396		7.5902	0	1	9138.7	+		13632	8838	7860	8024	10785	10785					0.06404793225090089
LFLAGFLA	8	Unmodified	_LFLAGFLA_					0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.5025522257001	1	851.502552	850.495276	1.0481	0.00089244	0.31725	0.00027014	1.3653	0.0011626	851.5024462402467	28.676	0.096542	28.668	28.644	28.74	-0.0083504	366	55	1.4019053	0.032124758	1.4003859	285.3106	0	6.5379333						104	5	3	NaN	NaN	NaN	0.83849	1	5262	5262		4.0537	0	1	8778.3	+		13633	8838	7860	8024	10786	10786					0.06404793225090089
LFLAGFLA	8	Unmodified						0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	851.502552	850.495276	1.6845	0.0014344	1.3221	0.0011258	3.0066	0.0025601	851.5036328660303	28.653	0.072367	28.653	28.653	28.725	0	369	55	1.4001206	0.032124758	1.4001206	284.94742		6.5379333	-0.0075011	0.00044857	-0.00013259	NaN	7.5902	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9138.7	+		13634	8838	7860	8024							0.06404793225090089
LFLAGFLA	8	Unmodified						0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.502552	850.495276	1.0481	0.00089244	0.31725	0.00027014	1.3653	0.0011626	851.5024462402467	28.676	0.096542	28.668	28.644	28.74	-0.0083504	366	55	1.4019053	0.032124758	1.4003859	285.3106		6.5379333	0.0075011	-0.00040707	0.00013259	NaN	7.5902	104	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8778.3	+		13635	8838	7860	8024							0.06404793225090089
LFLAGGRG	8	Unmodified	_LFLAGGRG_					0	0	0			REV__ENST00000339728.5_1_2:235403839-235404196:-|nuORF	REV__ENST00000339728.5_1_2:235403839-235404196:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.73213774160007	2	395.732138	789.449723	1.7148	0.00067861	4.3288	0.001713	6.0436	0.0023917	395.7341641348011	53.674	0.12945	53.674	53.602	53.731	0	1395	70	0.7784366	0.042595625	0.7784366	317.23163	0	17.358734						267	5	4	NaN	NaN	NaN	0.84876	1	4623	4623		0.39566	0	1	216440	+		13636	11778	7861	8025	10787	10787					0.04657567762717463
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.8024256447501	2	522.802426	1043.5903	1.152	0.00060228	-1.2927	-0.00067585	-0.14071	-7.3562E-05	522.8014663308593	34.855	0.16879	34.855	34.806	34.975	0	1239	49	0.87444305	0.02945429	0.87444305	354.87308	0	11.953339						223	8	3	NaN	NaN	NaN	0.024986	1	10369	10369		65.672	3.6953	1	62559	+		13637	10918	7862	8026	10788	10788					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.5975748229	1	1044.59757	1043.5903	1.7737	0.0018528	-0.97451	-0.001018	0.79918	0.00083482	1044.5963340585495	34.855	0.16879	34.855	34.806	34.975	0	111	163	1.5529068	0.095549226	1.5529068	315.11014	0	19.38852						785	8	5	NaN	NaN	NaN	0.0055068	1	10371	10371		101.55	16.675	1	268700	+		13638	10918	7862	8026	10789	10789					0.07024681905613761
LFLAPVITL	9	Unmodified	_LFLAPVITL_					0	0	0		tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.6284810208	1	986.628481	985.621205	1.4663	0.0014467	-0.54639	-0.00053908	0.91991	0.00090761	986.6271752629656	40.102	0.096214	40.108	40.108	40.204	0.0060463	207	67	1.496219	0.039043188	1.4946996	303.84012	0	7.9285583						101	5	3	NaN	NaN	NaN	0.042649	1	7913	7913		50.033	2.9924	1	10766			13639	13740	7863	8027	10790	10790					0.12781880010504665
LFLDRTYVL	9	Unmodified	_LFLDRTYVL_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3265992328	2	570.326599	1138.63865	0.85334	0.00048668	-4.3476	-0.0024796	-3.4943	-0.0019929	570.3243088616758	27.808	0.096592	27.798	27.774	27.87	-0.009552	1188	40	0.90571284	0.02388376	0.9041934	367.16342	0	9.682159						110	5	3	NaN	NaN	NaN	0.3106	1	13942	13942		18.233	3.2206	1	16099			13640	3240;3983	7864	8028	10791	10791					0.07487175545520586
LFLDRTYVL	9	Unmodified						0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000158290|Q13620-3|CUL4B	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.326599	1138.63865	1.6856	0.00096136	-4.9028	-0.0027962	-3.2171	-0.0018348	570.3238525418519	27.784	0.096506	27.784	27.76	27.857	0	1185	52	0.90755045	0.031249523	0.90755045	367.9084		12.668152	-0.0068797	-0.00035179	0.0016785	NaN	18.233	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15662			13641	3240;3983	7864	8028							0.07487175545520586
LFLDSNGLFLF	11	Unmodified	_LFLDSNGLFLF_					0	0	0		ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	ENSG00000128973|ENST00000249806|CLN6	ENSG00000128973|ENST00000249806|CLN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3449889512	2	643.344989	1284.67542	1.3397	0.00086187	-3.82	-0.0024576	-2.4803	-0.0015957	643.3422884291128	42.291	0.11982	42.291	42.243	42.363	0	1113	40	0.9515937	0.023824632	0.9515937	385.2378	0	9.64502						116	6	3	NaN	NaN	NaN	0.4078	1	18517	18517		21.771	9.2014	1	8102.7			13642	2588	7865	8029	10792	10792					0.044474273714058654
LFLECLNN	8	Unmodified	_LFLECLNN_					0	0	0		ENST00000535900.5_1_12:109939233-109948161:+|nuORF;nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B	ENST00000535900.5_1_12:109939233-109948161:+|nuORF	ENST00000535900.5_1_12:109939233-109948161:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4760794787	1	965.476079	964.468803	0.82699	0.00079844	-1.3059	-0.0012608	-0.47888	-0.00046234	965.4734132725757	31.211	0.048283	31.211	31.187	31.235	0	285	70	1.4500183	0.040911198	1.4500183	294.5471	0	8.310425						69	3	2	NaN	NaN	NaN	0.73961	1	7462	7462		16.584	0.16752	1	12995			13643	3724	7866	8030	10793	10793					-0.014852637285684978
LFLGFLHYFRP	11	Unmodified	_LFLGFLHYFRP_					0	0	0		ENSG00000101846|ENST00000674429|STS;nc|ENSG00000101846|P08842|STS	ENSG00000101846|ENST00000674429|STS	ENSG00000101846|ENST00000674429|STS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.39006515685	2	705.390065	1408.76558	0.71677	0.0005056	3.234	0.0022813	3.9508	0.0027869	705.892904012116	32.925	0.14481	32.925	32.852	32.997	0	1041	64	0.9955231	0.03839469	0.9955231	402.64404	0	15.528931						274	7	4	NaN	NaN	NaN	0.63005	1	20140	20140		12.049	0	1	25907			13644	1347	7867	8031	10794	10794					0.07754521490505795
LFLLFLFKQ	9	Unmodified	_LFLLFLFKQ_					0	0	0			REV__ENST00000263979.7_1_1:25944342-25980780:+|nuORF	REV__ENST00000263979.7_1_1:25944342-25980780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8600779094	2	584.860078	1167.7056	-0.39141	-0.00022892	-3.1636	-0.0018503	-3.555	-0.0020792	584.8597287613726	53.753	0.12055	53.753	53.753	53.873	-0.00059128	1140	46	0.93509084	0.027519584	0.9335714	378.95996	0	11.1527405						189	6	5	NaN	NaN	NaN	0.67818	1	14881	14881		1.072	0	1	26016	+		13645	9252	7868	8032	10795	10795					0.128458308272684
LFLPRMQWYR	10	Unmodified	_LFLPRMQWYR_					0	0	0			REV__nc|ENSG00000164362|O14746-4|TERT	REV__nc|ENSG00000164362|O14746-4|TERT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.37917450705	2	705.379175	1408.7438	1.672	0.0011794	-9.2942	-0.0065559	-7.6221	-0.0053765	705.371948949643	18.077	0.071926	18.077	18.053	18.125	0	1068	31	0.97906286	0.01829803	0.97906286	395.98672	0	7.4007263						83	4	3	NaN	NaN	NaN	0.76548	1	20138	20138		3.5698	0.30878	1	7352.6	+		13646	10336	7869	8033	10796	10796					0.05577393470275638
LFLPYSHFL	9	Unmodified	_LFLPYSHFL_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.81058502785	2	568.810585	1135.60662	1.929	0.0010972	3.0301	0.0017235	4.9591	0.0028208	568.8123519618606	30.342	0.21717	30.342	30.198	30.415	0	1179	91	0.9112251	0.055155218	0.9112251	369.4098	0	22.359863						528	10	4	NaN	NaN	NaN	0.20577	1	14306	14306		24.961	4.0085	1	105920			13647	2026	7870	8034	10797	10797					0.04423807862372087
LFLVFWKET	9	Unmodified	_LFLVFWKET_					0	0	0			REV__ENST00000519395.5_1_5:162884011-162884588:-|nuORF	REV__ENST00000519395.5_1_5:162884011-162884588:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8315174352	2	591.831517	1181.64848	1.1705	0.00069273	-4.5619	-0.0026999	-3.3915	-0.0020072	591.8286363428205	24.019	0.14477	24.006	23.982	24.127	-0.012747	1014	136	1.0119673	0.08210641	1.0104479	410.05884	0	33.270355						438	7	4	NaN	NaN	NaN	0.68748	1	15296	15296		0.27539	0	1	52252	+		13648	12589	7871	8035	10798	10798					0.06492363550887603
LFLVFWKET	9	Unmodified						0	0	0			REV__ENST00000519395.5_1_5:162884011-162884588:-|nuORF	REV__ENST00000519395.5_1_5:162884011-162884588:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.831517	1181.64848	1.1705	0.00069273	-4.5619	-0.0026999	-3.3915	-0.0020072	591.8286363428205	24.019	0.14477	24.006	23.982	24.127	-0.012747	1014	136	1.0119673	0.08210641	1.0104479	410.05884		33.270355	0.0055685	-0.00021636	-0.00075972	NaN	0.27539	438	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52252	+		13649	12589	7871	8035							0.06492363550887603
LFNDFGALNI	10	Unmodified	_LFNDFGALNI_					0	0	0		nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-4|PAN3	nc|ENSG00000152520|Q58A45-4|PAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1123.5782363643	1	1123.57824	1122.57096	0.90251	0.001014	6.057	0.0068055	6.9595	0.0078195	1123.5855749416805	32.489	0.1689	32.486	32.317	32.486	-0.0031013	63	67	1.5811787	0.038849115	1.5796592	320.55228	0	7.875885						187	8	2	NaN	NaN	NaN	0.38071	1	13379	13379		24.4	3.9516	1	24642			13650	3776	7872	8036	10799	10799					0.014577256147049411
LFNFTQSLR	9	Unmodified	_LFNFTQSLR_					0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3061981417001	2	563.306198	1124.59784	1.4381	0.00081008	-10.227	-0.0057608	-8.7886	-0.0049507	563.3008169254592	32.925	0.36202	32.925	32.804	33.166	0	1203	61	0.8965218	0.036782026	0.8965218	363.49182	0	14.913147						373	16	2	NaN	NaN	NaN	0.16171	1	13873	13873		27.789	5.9538	1	78390	+		13651	10340	7873	8037	10800	10800					0.0405283422589946
LFNFTQSLR	9	Unmodified						0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.306198	1124.59784	1.4381	0.00081008	-10.227	-0.0057608	-8.7886	-0.0049507	563.3008169254592	32.925	0.36202	32.925	32.804	33.166	0	1203	61	0.8965218	0.036782026	0.8965218	363.49182		14.913147	-0.010269	-0.0014304	-0.00015958	NaN	27.789	373	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78390	+		13652	10340	7873	8037							0.0405283422589946
LFNFTQSLR	9	Unmodified						0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.306198	1124.59784	1.1053	0.00062265	-7.931	-0.0044676	-6.8257	-0.003845	563.30130501523	32.948	0.3376	32.945	32.825	33.162	-0.0024757	1200	55	0.89836043	0.033093095	0.896841	364.23727		13.41748	0.010269	0.001156	0.00015958	NaN	27.789	389	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73772	+		13653	10340	7873	8037							0.0405283422589946
LFNLDEHQFD	10	Unmodified	_LFNLDEHQFD_					0	0	0			REV__ENST00000592329.1_1_17:73974613-73975103:-|nuORF	REV__ENST00000592329.1_1_17:73974613-73975103:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.5314152868333	3	426.531415	1276.57242	1.7551	0.00074861	-5.4217	-0.0023125	-3.6666	-0.0015639	426.5296924118724	23.465	0.12068	23.451	23.403	23.524	-0.013294	1512	31	0.7060759	0.018593311	0.70455647	428.791	0	11.291504						71	6	2	NaN	NaN	NaN	0.65442	1	17533	17533		8.9416	1.259	1	6893.4	+		13654	10216	7874	8038	10801	10801					-0.05480685087195525
LFPAYAKQF	9	Unmodified	_LFPAYAKQF_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.79493496365	2	542.794935	1083.57532	1.536	0.00083371	-9.2336	-0.005012	-7.6977	-0.0041783	542.7889385756305	19.25	0.14419	19.236	19.212	19.356	-0.014141	1263	109	0.85970795	0.06635821	0.8581885	348.72552	0	26.917023						264	7	4	NaN	NaN	NaN	0.47587	1	11818	11818		10.605	0.85897	1	29465	+		13655	8419	7875	8039	10802	10802					0.036872348282713574
LFPDGIIVL	9	Unmodified	_LFPDGIIVL_					0	0	0		ENST00000376621.7_1_6:30511505-30511643:-|nuORF	ENST00000376621.7_1_6:30511505-30511643:-|nuORF	ENST00000376621.7_1_6:30511505-30511643:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5920955145001	1	986.592096	985.584819	1.7558	0.0017323	-6.2734	-0.0061892	-4.5175	-0.004457	986.584652727362	36.661	0.072155	36.663	36.615	36.687	0.0016747	201	76	1.4997677	0.044355392	1.4982482	304.5609	0	9.007355						117	4	2	NaN	NaN	NaN	0.55027	1	7908	7908		7.5404	3.1273	1	9141.9			13656	6702	7876	8040	10803	10803					0.09145003113803796
LFPDPHLRK	9	Unmodified	_LFPDPHLRK_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.88546420243335	3	374.885464	1121.63456	1.6124	0.00060448	-4.6267	-0.0017345	-3.0143	-0.00113	374.8835812033306	15.222	0.096076	15.222	15.198	15.294	0	1506	28	0.70979416	0.016729414	0.70979416	431.68466	0	10.174561						59	5	2	NaN	NaN	NaN	0.27442	1	13765	13765		13.463	0	1	3764	+		13657	8930	7877	8041	10804	10804					0.07861130842479724
LFPFMVCRP	9	Unmodified	_LFPFMVCRP_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|66|1|anti-sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|66|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2853655823001	2	555.285366	1108.55618	1.4609	0.00081123	-1.5983	-0.00088752	-0.13739	-7.629E-05	555.2845954774936	24.864	0.24129	24.851	24.827	25.068	-0.012392	1248	100	0.8689189	0.060739636	0.86739945	352.362	0	24.630981						460	11	2	NaN	NaN	NaN	0.17818	1	12852	12852		26.732	4.8966	1	79662	+		13658	13041	7878	8042	10805	10805					0.006242389413728233
LFPFYFILA	9	Unmodified	_LFPFYFILA_					0	0	0			REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8178787437001	2	565.817879	1129.6212	2.2489	0.0012725	-0.23967	-0.00013561	2.0093	0.0011369	565.8180837873952	18.916	0.024012	18.916	18.916	18.94	0	1167	25	0.91857195	0.014690578	0.91857195	372.4119	0	5.9559326						35	2	2	NaN	NaN	NaN	0.6532	1	14079	14079		1.2418	0	1	4034	+		13659	12290	7879	8043	10806	10806					0.06157880010528061
LFPFYFILA	9	Unmodified						0	0	0			REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.817879	1129.6212	2.2489	0.0012725	-0.23967	-0.00013561	2.0093	0.0011369	565.8180837873952	18.916	0.024012	18.916	18.916	18.94	0	1167	25	0.91857195	0.014690578	0.91857195	372.4119		5.9559326	-0.039774	-7.8622E-05	0.0053518	NaN	1.2418	35	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4034	+		13660	12290	7879	8043							0.06157880010528061
LFPFYFILA	9	Unmodified						0	0	0			REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	REV__ENST00000465299.1_3_6:145157593-145158348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.817879	1129.6212	1.9968	0.0011298	-0.044463	-2.5158E-05	1.9523	0.0011047	565.8184184821607	19.01	0.048071	18.996	18.972	19.02	-0.014059	1182	40	0.9093879	0.023886383	0.90786844	368.68842		9.684143	0.039774	0.00014228	-0.0053518	NaN	1.2418	57	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043.2	+		13661	12290	7879	8043							0.06157880010528061
LFPGAPPT	8	Unmodified	_LFPGAPPT_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4348665910001	1	799.434867	798.42759	1.5585	0.0012459	4.3551	0.0034816	5.9136	0.0047275	799.4382522563938	35.675	0.26522	35.675	35.603	35.868	0	468	91	1.3411216	0.05375278	1.3411216	273.22308	0	10.950928						532	12	3	NaN	NaN	NaN	0.75682	1	4734	4734		15.013	2.7532	1	100920			13662	2649	7880	8044	10807	10807					0.020313432942771215
LFPGAPPT	8	Unmodified						0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	799.434867	798.42759	1.1698	0.00093516	5.2833	0.0042236	6.4531	0.0051588	799.4387412097375	35.673	0.28926	35.674	35.602	35.891	0.00053024	465	94	1.3429124	0.055547595	1.341393	273.58792		11.316559	-0.00045599	0.00042661	0.00013573	NaN	15.013	512	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97486			13663	2649	7880	8044							0.020313432942771215
LFPHMILL	8	Unmodified	_LFPHMILL_					0	0	0			REV__nc|ENSG00000170899|O15217-2|GSTA4	REV__nc|ENSG00000170899|O15217-2|GSTA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5746713113002	1	983.574671	982.567395	1.3835	0.0013608	2.0648	0.0020309	3.4483	0.0033916	983.5770813041138	30.245	0.048262	30.238	30.214	30.263	-0.0064106	213	70	1.4926696	0.04081571	1.4911501	303.13232	0	8.288879						130	3	3	NaN	NaN	NaN	0.81214	1	7809	7809		7.5902	0	1	12275	+		13664	10603	7881	8045	10808	10808					0.07541384307160115
LFPHMILL	8	Unmodified						0	0	0			REV__nc|ENSG00000170899|O15217-2|GSTA4	REV__nc|ENSG00000170899|O15217-2|GSTA4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	983.574671	982.567395	1.9759	0.0019435	1.4387	0.001415	3.4146	0.0033585	983.5760984111068	30.246	0.072382	30.246	30.222	30.294	0	210	64	1.4944444	0.037270427	1.4944444	303.49274		7.5689087	0.0036904	-0.00037836	0.0016471	NaN	7.5902	119	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13112	+		13665	10603	7881	8045							0.07541384307160115
LFPHMILL	8	Unmodified						0	0	0			REV__nc|ENSG00000170899|O15217-2|GSTA4	REV__nc|ENSG00000170899|O15217-2|GSTA4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.574671	982.567395	1.3835	0.0013608	2.0648	0.0020309	3.4483	0.0033916	983.5770813041138	30.245	0.048262	30.238	30.214	30.263	-0.0064106	213	70	1.4926696	0.04081571	1.4911501	303.13232		8.288879	-0.0036904	0.00023746	-0.0016471	NaN	7.5902	130	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12275	+		13666	10603	7881	8045							0.07541384307160115
LFPNEFANF	9	Unmodified	_LFPNEFANF_					0	0	0		SLITRK1|p.N83K|1|0.33|ENSG00000178235|chr13:83881259-83881259|A/T|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.N83K|1|0.33|ENSG00000178235|chr13:83881259-83881259|A/T|missense_variant	SLITRK1|p.N83K|1|0.33|ENSG00000178235|chr13:83881259-83881259|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7663744894501	2	549.766374	1097.5182	1.2277	0.00067497	-7.7569	-0.0042645	-6.5292	-0.0035895	549.7616527086451	34.853	0.12054	34.853	34.804	34.925	-0.0006485	1242	61	0.87260187	0.036821842	0.8710824	353.89923	0	14.933746						204	6	4	NaN	NaN	NaN	0.18779	1	12401	12401		26.115	2.7805	1	22508			13667	5107	7882	8046	10809	10809					-0.026662324480867028
LFRGGGAQ	8	Unmodified	_LFRGGGAQ_					0	0	0			REV__ENST00000493260.5_1_19:48981039-48982464:+|nuORF	REV__ENST00000493260.5_1_19:48981039-48982464:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4315125476	1	805.431513	804.424236	1.834	0.0014771	-8.6347	-0.0069547	-6.8007	-0.0054775	805.4250543250948	24.598	0.072388	24.598	24.574	24.647	0	438	37	1.359022	0.021471381	1.359022	276.83505	0	4.373749						50	4	2	NaN	NaN	NaN	0.76633	1	4796	4796		13.737	0	1	3361.3	+		13668	12478	7883	8047	10810	10810					0.014200932402786748
LFRSGEDDE	9	Unmodified	_LFRSGEDDE_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.23563546705	2	534.235635	1066.45672	0.72782	0.00038883	7.2502	0.0038733	7.978	0.0042621	534.2396659636576	29.28	0.1689	29.272	29.2	29.368	-0.0077229	1332	91	0.8172735	0.05537027	0.81575406	331.57944	0	22.464508						327	8	3	NaN	NaN	NaN	0.49672	1	11125	11125		9.746	1.4685	1	34441			13669	539	7884	8048	10811	10811					-0.07385208938057986
LFRYAEKI	8	Unmodified	_LFRYAEKI_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3003844823	2	520.300384	1038.58622	2.0452	0.0010641	1.233	0.00064153	3.2782	0.0017057	520.3019394003247	26.239	0.096508	26.239	26.167	26.263	0	1260	70	0.8615505	0.04236108	0.8615505	349.66287	0	17.192383						157	5	2	NaN	NaN	NaN	0.74229	1	10161	10161		16.417	0	1	16162			13670	8003	7885	8049	10812	10812					0.06846637202556849
LFSAAGAA	8	Unmodified	_LFSAAGAA_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3722663341999	1	707.372266	706.36499	1.2701	0.00089843	-11.164	-0.0078969	-9.8936	-0.0069985	707.3646869142428	25.081	0.16887	25.081	25.033	25.202	0	633	76	1.2423272	0.045045853	1.2423272	253.65302	0	9.19725						216	8	3	NaN	NaN	NaN	0.82332	1	3336	3336		6.0903	0	1	22629			13671	3986	7886	8050	10813	10813					6.197226082349516E-05
LFSAGRGP	8	Unmodified	_LFSAGRGP_					0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4362635745	1	804.436264	803.428987	1.4743	0.001186	-9.339	-0.0075126	-7.8647	-0.0063266	804.4286332539793	34.154	0.28943	34.153	34.08	34.37	-0.0012474	477	127	1.3357477	0.07528615	1.3342283	272.0997	0	15.336212						570	13	4	NaN	NaN	NaN	0.67593	1	4695	4695		20.555	0	1	110000	+		13672	9879	7887	8051	10814	10814					0.019409773830375343
LFSAGRGP	8	Unmodified						0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	804.436264	803.428987	1.7319	0.0013932	-10.173	-0.0081836	-8.4412	-0.0067904	804.4279601472281	34.155	0.3135	34.155	34.083	34.396	0	480	112	1.3339561	0.06631994	1.3339561	271.73474		13.509766	0.0012279	-0.00034409	-0.00013611	NaN	20.555	614	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115350	+		13673	9879	7887	8051							0.019409773830375343
LFSAGRGP	8	Unmodified						0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	804.436264	803.428987	1.4743	0.001186	-9.339	-0.0075126	-7.8647	-0.0063266	804.4286332539793	34.154	0.28943	34.153	34.08	34.37	-0.0012474	477	127	1.3357477	0.07528615	1.3342283	272.0997		15.336212	-0.0012279	0.00032684	0.00013611	NaN	20.555	570	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110000	+		13674	9879	7887	8051							0.019409773830375343
LFSALDAVL	9	Unmodified	_LFSALDAVL_					0	0	0		ENST00000603175.1_1_2:74729816-74730080:+|nuORF	ENST00000603175.1_1_2:74729816-74730080:+|nuORF	ENST00000603175.1_1_2:74729816-74730080:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	0.98833	0.00093747	-0.46636	-0.00044236	0.52197	0.00049511	948.5397472858723	32.537	0.096542	32.534	32.51	32.607	-0.0031052	255	61	1.4678029	0.035557866	1.4662834	298.23477	0	7.224823						118	5	2	NaN	NaN	NaN	0.078597	1	6900	6900		38.918	0	1	13372			13675	7775	7888	8052	10815	10815					0.056918397000458754
LFSCIIFLLFL	11	Unmodified	_LFSCIIFLLFL_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8879780691001	2	664.887978	1327.7614	0.91894	0.00061099	-8.1118	-0.0053935	-7.1929	-0.0047825	664.8819111888606	31.235	0.16892	31.235	31.187	31.356	0	1104	40	0.9570911	0.023819447	0.9570911	387.32956	0	9.639587						231	8	4	NaN	NaN	NaN	0.29515	1	19232	19232		25.801	6.6374	1	39434	+		13676	9040	7889	8053	10816	10816					0.11063295952590124
LFSCKSLLI	9	Unmodified	_LFSCKSLLI_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2989958863001	2	512.298996	1022.58344	1.9493	0.00099865	-10.161	-0.0052055	-8.2116	-0.0042068	512.2935199043354	15.726	0.095997	15.726	15.702	15.798	0	1305	31	0.83389086	0.01845473	0.83389086	338.50644	0	7.491455						73	5	2	NaN	NaN	NaN	0.2345	1	9469	9469		23.118	0.99124	1	6642.3			13677	6943	7890	8054	10817	10817					0.07305045753400918
LFSFCLTI	8	Unmodified	_LFSFCLTI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.25151437744995	2	472.251514	942.488476	1.1449	0.00054068	-8.9178	-0.0042114	-7.7729	-0.0036708	472.24740689315195	23.199	0.2413	23.186	23.138	23.379	-0.013294	1308	79	0.83204526	0.048008323	0.8305259	338.13815	0	19.510315						559	11	5	NaN	NaN	NaN	0.14214	1	6738	6738		55.947	0	1	329070			13678	2200	7891	8055	10818	10818					0.014931122821963072
LFSLDETTV	9	Unmodified	_LFSLDETTV_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5197184324	1	1024.51972	1023.51244	1.4361	0.0014713	1.9259	0.0019731	3.362	0.0034444	1024.5215202824022	27.228	0.19305	27.218	27.194	27.387	-0.010124	216	142	1.4908947	0.083361864	1.4893752	302.60428	0	16.9198						481	9	2	NaN	NaN	NaN	0.025843	1	9314	9314		64.55	2.5733	1	91653			13679	2640	7892	8056	10819	10819					0.0016262424956039467
LFSLLTPVL	9	Unmodified	_LFSLLTPVL_					0	0	0			REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.6233956428999	1	1002.6234	1001.61612	1.3116	0.001315	-0.51665	-0.000518	0.79491	0.000797	1002.6224537205911	40.366	0.12016	40.373	40.325	40.445	0.0067558	168	61	1.5192716	0.035437346	1.5177522	308.4535	0	7.1947327						139	6	2	NaN	NaN	NaN	0.030391	1	8497	8497		58.599	2.6518	1	11344	+		13680	12003	7893	8057	10820	10820					0.11537576147884465
LFSLLTPVL	9	Unmodified						0	0	0			REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1002.6234	1001.61612	1.3116	0.001315	-0.51665	-0.000518	0.79491	0.000797	1002.6224537205911	40.366	0.12016	40.373	40.325	40.445	0.0067558	168	61	1.5192716	0.035437346	1.5177522	308.4535		7.1947327	-0.0096261	-0.00043554	0.00012636	NaN	58.599	139	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11344	+		13681	12003	7893	8057							0.11537576147884465
LFSMIVVL	8	Unmodified	_LFSMIVVL_					0	0	0		nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5477878588002	1	921.547788	920.540511	1.4451	0.0013317	-3.0218	-0.0027847	-1.5767	-0.001453	921.5447317130358	38.297	0.12021	38.301	38.204	38.325	0.0034256	258	49	1.4660252	0.028446317	1.4645058	297.99872	0	5.782257						125	6	2	NaN	NaN	NaN	0.30832	1	6298	6298		41.46	0	1	8929.8			13682	8050	7894	8058	10821	10821					0.07706275695977638
LFSNSTRLSF	10	Unmodified	_LFSNSTRLSF_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3089377959	2	586.308938	1170.60332	0.068266	4.0025E-05	-1.3021	-0.00076344	-1.2338	-0.00072342	586.8090965450122	45.836	0.19181	45.847	45.775	45.967	0.010719	1293	31	0.84127116	0.018446803	0.8397517	340.92822	0	7.4756165						138	9	3	NaN	NaN	NaN	0.73444	1	14970	14970		5.6942	0	1	8645.7			13683	84	7895	8059	10822	10822					0.024845130176800012
LFSPATFSPAF	11	Unmodified	_LFSPATFSPAF_					0	0	0			REV__TBC1D4|p.S704F|1|0.44|ENSG00000136111|chr13:75324324-75324324|G/A|missense_variant	REV__TBC1D4|p.S704F|1|0.44|ENSG00000136111|chr13:75324324-75324324|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.802956961	2	592.802957	1183.59136	0.46619	0.00027636	-1.1551	-0.00068477	-0.68895	-0.00040841	592.8017502791107	33.72	0.31369	33.718	33.621	33.935	-0.0018463	1236	106	0.876284	0.064358115	0.8747646	355.07193	0	26.078064						485	14	4	NaN	NaN	NaN	0.5528	1	15355	15355		16.584	0	1	101100	+		13684	13366	7896	8060	10823	10823					0.00690896274500119
LFSQELVL	8	Unmodified	_LFSQELVL_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	0.91081	0.00086394	-1.8994	-0.0018016	-0.98856	-0.00093769	948.5374322032344	33.792	0.07243	33.79	33.79	33.863	-0.0018501	285	70	1.4500183	0.040937185	1.4484988	294.62122	0	8.31781						102	4	2	NaN	NaN	NaN	0.45125	1	6896	6896		33.698	0	1	9289	+		13685	10857	7897	8061	10824	10824					0.056918397000458754
LFSTSFRSL	9	Unmodified	_LFSTSFRSL_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.567671678	1	1057.56767	1056.5604	1.7506	0.0018514	-5.0307	-0.0053203	-3.2801	-0.0034689	1057.5624958125497	35.096	0.72365	35.096	34.831	35.554	0	90	181	1.5652816	0.10619962	1.5652816	317.57034	0	21.546204						2053	31	3	NaN	NaN	NaN	0.094712	1	10947	10947		36.586	6.9881	1	596140	+		13686	10981	7898	8062	10825	10825					0.034377429602727716
LFSTSFRSL	9	Unmodified						0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1057.56767	1056.5604	1.7506	0.0018514	-5.0307	-0.0053203	-3.2801	-0.0034689	1057.5624958125497	35.096	0.72365	35.096	34.831	35.554	0	90	181	1.5652816	0.10619962	1.5652816	317.57034		21.546204	0	0	0	NaN	36.586	2053	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596140	+		13687	10981	7898	8062							0.034377429602727716
LFSWIQENA	9	Unmodified	_LFSWIQENA_					0	0	0		ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.27710635125	2	554.277106	1106.53966	1.0984	0.0006088	-2.0174	-0.0011182	-0.91907	-0.00050942	554.2759099227911	35.36	0.12048	35.361	35.312	35.433	0.00053024	1257	46	0.86339295	0.027635753	0.8618735	350.12897	0	11.207031						90	6	2	NaN	NaN	NaN	0.59509	1	12758	12758		5.6942	0.78442	1	5472.7			13688	4139	7899	8063	10826	10826					-0.009348474193984657
LFSWIQENA	9	Unmodified						0	0	0		ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.277106	1106.53966	0.39854	0.0002209	-1.5271	-0.00084646	-1.1286	-0.00062556	554.2759535848745	35.361	0.096516	35.361	35.313	35.41	0	1269	61	0.8560222	0.036845744	0.8560222	347.13992		14.941925	0.00038885	0.00026772	-0.0029256	NaN	5.6942	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6884.9			13689	4139	7899	8063							-0.009348474193984657
LFTALCSLL	9	Unmodified	_LFTALCSLL_					0	0	0		ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5485161403	1	980.548516	979.54124	1.5962	0.0015651	2.0294	0.0019899	3.6256	0.0035551	980.5485935090824	34.781	0.19277	34.78	34.684	34.877	-0.0006485	216	61	1.4908947	0.03549373	1.4893752	302.7848	0	7.2084045						231	9	3	NaN	NaN	NaN	0.12945	1	7711	7711		31.561	5.8093	1	24305			13690	7505	7900	8064	10827	10827					0.050650703450060064
LFTALCSLL	9	Unmodified						0	0	0		ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	ENST00000542380.1_19:20607607-20607751:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	980.548516	979.54124	1.5164	0.0014869	-0.040705	-3.9913E-05	1.4757	0.001447	980.5480840303667	34.806	0.12067	34.806	34.758	34.879	0	219	58	1.4891195	0.033728123	1.4891195	302.4243		6.849823	0.013108	-0.00063824	-0.00012786	NaN	31.561	148	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19409			13691	7505	7900	8064							0.050650703450060064
LFTEATRILFF	11	Unmodified	_LFTEATRILFF_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3793630847999	2	679.379363	1356.74417	0.88418	0.0006007	-3.8122	-0.0025899	-2.928	-0.0019892	679.3779160435188	33.142	0.096516	33.142	33.118	33.214	0	1098	37	0.960755	0.02198124	0.960755	388.72675	0	8.893738						88	5	3	NaN	NaN	NaN	0.032697	1	19636	19636		54.991	23.793	1	6284.3			13692	1155	7901	8065	10828	10828					0.08007091671106537
LFTEATRILFF	11	Unmodified	_LFTEATRILFF_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3793630847999	2	679.379363	1356.74417	0.95863	0.00065127	-5.6285	-0.0038239	-4.6699	-0.0031726	679.3759336208205	33.237	0.096539	33.235	33.186	33.283	-0.0024757	1092	31	0.9644182	0.018315732	0.96289873	390.2089	0	7.4106445						69	5	2	NaN	NaN	NaN	0.59348	1	18743	18743		14.45	4.7035	1	6689.1			13693	1155	7901	8065	10829	10829					0.08007091671106537
LFTGIEEL	8	Unmodified	_LFTGIEEL_					0	0	0		nc|ENSG00000126467|Q9UJT2-2|TSKS;ENSG00000126467|ENST00000246801|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.4927754004001	1	921.492775	920.485499	1.1319	0.001043	-0.047713	-4.3967E-05	1.0841	0.00099903	921.4923213472792	31.21	0.096544	31.205	31.181	31.277	-0.0050716	354	64	1.4090419	0.037449002	1.4075224	286.41595	0	7.612274						88	5	2	NaN	NaN	NaN	0.62311	1	6293	6293		23.85	0	1	6387.6			13694	2505	7902	8066	10830	10830					0.02207560429053501
LFTGIEEL	8	Unmodified						0	0	0		nc|ENSG00000126467|Q9UJT2-2|TSKS;ENSG00000126467|ENST00000246801|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	nc|ENSG00000126467|Q9UJT2-2|TSKS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	921.492775	920.485499	0.90593	0.00083481	0.87458	0.00080592	1.7805	0.0016407	921.4940408319308	31.235	0.096497	31.235	31.211	31.308	0	357	49	1.407258	0.028537154	1.407258	286.05334		5.8007507	0.015129	0.00044455	-0.00013221	NaN	23.85	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5901.2			13695	2505	7902	8066							0.02207560429053501
LFTLYSSVL	9	Unmodified	_LFTLYSSVL_					0	0	0			REV__ENST00000491497.1_1_1:161088534-161089257:+|nuORF	REV__ENST00000491497.1_1_1:161088534-161089257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7946006126501	2	521.794601	1041.57465	1.613	0.00084166	-1.8033	-0.00094095	-0.19028	-9.9287E-05	521.7936001099345	34.95	0.24114	34.95	34.781	35.022	-4.5776E-05	1284	100	0.8468043	0.060818434	0.8452849	343.6652	0	24.682404						563	11	5	NaN	NaN	NaN	0.12945	1	10083	10083		31.561	0	1	259330	+		13696	12467	7903	8067	10831	10831					0.055523953885767696
LFTRDNFRCLV	11	Unmodified	_LFTRDNFRCLV_					0	0	0		ENST00000488567.5_1_2:242029410-242034037:-|nuORF	ENST00000488567.5_1_2:242029410-242034037:-|nuORF	ENST00000488567.5_1_2:242029410-242034037:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3637214081001	2	692.363721	1382.71289	1.2798	0.00088612	-5.7254	-0.0039641	-4.4456	-0.003078	692.3592742261073	24.478	0.2653	24.478	24.357	24.623	0	1050	64	0.9900381	0.038407207	0.9900381	400.499	0	15.536804						272	12	3	NaN	NaN	NaN	0.71564	1	19916	19916		6.4299	0.98	1	21396			13697	7252	7904	8068	10832	10832					0.03684195365394771
LFTVALTGNIM	11	Unmodified	_LFTVALTGNIM_					0	0	0		ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.32574195305	2	590.325742	1178.63693	0.98914	0.00058391	6.7531	0.0039865	7.7422	0.0045704	590.3298113845445	40.777	0.23996	40.777	40.681	40.921	0	1179	67	0.9112251	0.040412188	0.9112251	369.24796	0	16.375916						377	11	4	NaN	NaN	NaN	0.54514	1	15793	15793		16.858	1.6829	1	71619			13698	5494	7905	8069	10833	10833					0.054757984652496816
LFTVALTGNIM	11	Unmodified						0	0	0		ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.325742	1178.63693	0.78017	0.00046055	7.2313	0.0042688	8.0114	0.0047294	590.330161956805	40.751	0.19208	40.757	40.685	40.877	0.0067558	1176	55	0.9130621	0.033064544	0.91154265	369.99234		13.398468	-0.0096118	0.00029293	0.00015879	NaN	16.858	343	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62711			13699	5494	7905	8069							0.054757984652496816
LFVAVAME	8	Unmodified	_LFVAVAME_					0	0	0			REV__ENST00000563135.5_1_15:41146443-41149170:+|nuORF	REV__ENST00000563135.5_1_15:41146443-41149170:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4644521599	1	879.464452	878.457176	0.96783	0.00085117	-6.5258	-0.0057392	-5.558	-0.0048881	879.4580323667111	30.004	0.3137	29.997	29.925	30.238	-0.0064106	357	82	1.407258	0.048153877	1.4057386	286.25497	0	9.7951355						350	14	3	NaN	NaN	NaN	0.67593	1	5658	5658		20.555	4.1388	1	29135	+		13700	10413	7906	8070	10834	10834					0.013085392481116287
LFVGLGGL	8	Unmodified	_LFVGLGGL_					0	0	0			REV__ENST00000216727.8_1_14:23795141-23795348:+|nuORF	REV__ENST00000216727.8_1_14:23795141-23795348:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.23926428195006	2	388.239264	774.463976	1.6755	0.00065048	1.4003	0.00054364	3.0757	0.0011941	388.2402949157669	53.674	0.25011	53.674	53.626	53.876	0	1350	109	0.80618626	0.06662446	0.80618626	328.64865	0	27.160034						368	10	3	NaN	NaN	NaN	0.84651	1	4430	4430		1.6704	0	1	98475	+		13701	11461	7907	8071	10835	10835					0.06772220190998723
LFVHWENLVYI	11	Unmodified	_LFVHWENLVYI_					0	0	0		ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.8848126034501	2	716.884813	1431.75507	1.6993	0.0012182	-2.8922	-0.0020734	-1.1929	-0.0008552	716.8824920024371	30.004	0.38615	30.004	29.86	30.246	0	999	76	1.0210962	0.045648992	1.0210962	412.92276	0	18.460083						655	17	3	NaN	NaN	NaN	0.51407	1	20284	20284		17.97	3.1157	1	83580			13702	5185	7908	8072	10836	10836					0.056464940454134194
LFVHWENLVYI	11	Unmodified	_LFVHWENLVYI_					0	0	0		ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.8848126034501	2	716.884813	1431.75507	0.8798	0.00063072	-1.9723	-0.0014139	-1.0925	-0.0007832	716.8831532439389	30.028	0.12063	30.021	29.901	30.021	-0.0064106	999	67	1.0210962	0.040169	1.0195768	412.92273	0	16.243988						228	6	2	NaN	NaN	NaN	0.69801	1	19323	19323		7.5876	0	1	31903			13703	5185	7908	8072	10837	10837					0.056464940454134194
LFVLYYLL	8	Unmodified	_LFVLYYLL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.3124292250501	2	522.312429	1042.61031	1.9009	0.00099285	-9.8359	-0.0051374	-7.935	-0.0041445	522.3068331849386	25.829	0.12066	25.829	25.805	25.926	0	1260	52	0.8615505	0.031313777	0.8615505	349.64526	0	12.70813						107	6	3	NaN	NaN	NaN	0.77734	1	10335	10335		12.26	1.6547	1	14102	+		13704	13159	7909	8073	10838	10838					0.09070477636237229
LFVMPACIL	9	Unmodified	_LFVMPACIL_					0	0	0		ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5464076503	1	1006.54641	1005.53913	1.0782	0.0010853	-3.6241	-0.0036478	-2.5459	-0.0025626	1006.5401656828942	31.646	0.04829	31.646	31.621	31.67	0	180	61	1.5121819	0.035474896	1.5121819	306.99783	0	7.201996						76	3	2	NaN	NaN	NaN	0.58547	1	8806	8806		6.0903	0	1	5611.4			13705	5477	7910	8074	10839	10839					0.036583183355446636
LFVSGEIYP	9	Unmodified	_LFVSGEIYP_					0	0	0			REV__tr|U7SNS1|U7SNS1_FUSNURsmDfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01737PE=4SV=1	REV__tr|U7SNS1|U7SNS1_FUSNURsmDfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01737PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.77112551635	2	512.771126	1023.5277	2.0312	0.0010415	-3.1567	-0.0016187	-1.1255	-0.00057711	513.2705479397124	16.446	0.1918	16.446	16.374	16.566	0	1296	46	0.8394264	0.027671635	0.8394264	340.7493	0	11.232788						143	9	3	NaN	NaN	NaN	0.47587	1	9504	9504		10.605	0.99332	1	16439	+		13706	13451	7911	8075	10840	10840					0.016875358374363714
LFVSIVFNK	9	Unmodified	_LFVSIVFNK_					0	0	0			REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.6295436533	1	1066.62954	1065.62227	1.605	0.0017119	-11.016	-0.01175	-9.411	-0.010038	1066.617872752118	36.157	0.14473	36.157	36.109	36.254	0	81	73	1.5705823	0.04239881	1.5705823	318.61087	0	8.601105						248	7	3	NaN	NaN	NaN	0.64666	1	11378	11378		3.5698	0.41644	1	26665	+		13707	13165	7912	8076	10841	10841					0.0920809437943717
LFVSIVFNK	9	Unmodified						0	0	0			REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1066.62954	1065.62227	1.605	0.0017119	-11.016	-0.01175	-9.411	-0.010038	1066.617872752118	36.157	0.14473	36.157	36.109	36.254	0	81	73	1.5705823	0.04239881	1.5705823	318.61087		8.601105	0.00027087	-0.00049953	-0.00012354	NaN	3.5698	248	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26665	+		13708	13165	7912	8076							0.0920809437943717
LFVSIVFNK	9	Unmodified						0	0	0			REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	REV__nc|ENSG00000166847|Q9BTE1-3|DCTN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1066.62954	1065.62227	1.206	0.0012864	-10.018	-0.010685	-8.8115	-0.0093986	1066.6180735811947	36.155	0.1205	36.157	36.108	36.229	0.0011024	78	70	1.5723488	0.04062581	1.5708294	318.9692		8.241394	-0.00027087	0.00056545	0.00012354	NaN	3.5698	213	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23325	+		13709	13165	7912	8076							0.0920809437943717
LFYETLNR	8	Unmodified	_LFYETLNR_					0	0	0			REV__DENND1A|p.V177L|1|0.28|ENSG00000119522|chr9:123652102-123652102|C/G|missense_variant	REV__DENND1A|p.V177L|1|0.28|ENSG00000119522|chr9:123652102-123652102|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2796490402001	2	528.279649	1054.54475	1.4591	0.00077079	-8.9383	-0.0047219	-7.4793	-0.0039511	528.7753997332165	38.417	0.048058	38.421	38.373	38.421	0.0040245	1263	52	0.85970795	0.031320512	0.8581885	348.846	0	12.708984						71	3	2	NaN	NaN	NaN	0.78264	1	10614	10614		11.548	0.94349	1	5644	+		13710	8307	7913	8077	10842	10842					0.0196545644323578
LFYFIPQHLS	10	Unmodified	_LFYFIPQHLS_					0	0	0			REV__OR52E4|p.M61I|1|0.23|ENSG00000180974|chr11:5884475-5884475|G/T|missense_variant	REV__OR52E4|p.M61I|1|0.23|ENSG00000180974|chr11:5884475-5884475|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.2290080112334	3	422.229008	1263.66519	1.2816	0.00054114	-2.0966	-0.00088525	-0.81497	-0.0003441	422.22839957788204	25.033	0.14476	25.021	24.972	25.117	-0.012011	1479	43	0.72651637	0.025999546	0.7249969	441.25235	0	15.790924						130	7	3	NaN	NaN	NaN	0.5358	1	17288	17288		10.861	4.9278	1	10966	+		13711	13281	7914	8078	10843	10843					0.04390864436868469
LFYKETYL	8	Unmodified	_LFYKETYL_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;LPCAT3|p.Q363Sfs*87|1|0.1|ENSG00000111684|chr12:6977700-6977701|-/G|frameshift_variant;ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5662746945	1	1076.56627	1075.559	1.3009	0.0014005	-1.0055	-0.0010825	0.29537	0.00031799	1077.5707631478742	32.876	0.16893	32.876	32.78	32.949	0	81	124	1.5705823	0.07248902	1.5705823	318.57318	0	14.703491						598	8	3	NaN	NaN	NaN	0.45125	1	11798	11798		33.698	0	1	101030			13712	4276	7915	8079	10844	10844					0.024241088715143633
LFYKRPDFA	9	Unmodified	_LFYKRPDFA_					0	0	0		ENSG00000136709|ENST00000322313|WDR33;nc|ENSG00000136709|Q9C0J8-3|WDR33;nc|ENSG00000136709|Q9C0J8-2|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8111163441001	2	578.811116	1155.60768	1.6071	0.00093022	-8.4487	-0.0048902	-6.8415	-0.00396	578.8068797068015	28.822	0.096504	28.822	28.75	28.846	0	1200	40	0.89836043	0.02390188	0.89836043	364.1189	0	9.687775						141	5	3	NaN	NaN	NaN	0.60063	1	15016	15016		5.4659	1.4122	1	14723			13713	3034	7916	8080	10845	10845					0.03610022231282528
LFYKRPDFA	9	Unmodified						0	0	0		ENSG00000136709|ENST00000322313|WDR33;nc|ENSG00000136709|Q9C0J8-3|WDR33;nc|ENSG00000136709|Q9C0J8-2|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.811116	1155.60768	1.1532	0.0006675	-11.502	-0.0066573	-10.349	-0.0059898	578.8048944055885	28.821	0.16896	28.813	28.765	28.933	-0.0083504	1200	43	0.89836043	0.025739074	0.896841	364.1189		10.432434	-0.0045493	-0.0016041	-0.00075972	NaN	5.4659	157	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14284			13714	3034	7916	8080							0.03610022231282528
LGAGDADA	8	Unmodified	_LGAGDADA_					0	0	0		ENST00000264042.7_1_2:242295701-242312516:+|nuORF	ENST00000264042.7_1_2:242295701-242312516:+|nuORF	ENST00000264042.7_1_2:242295701-242312516:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3100600078999	1	689.31006	688.302784	1.5122	0.0010423	-10.757	-0.0074147	-9.2446	-0.0063724	689.3012519356884	22.091	0.072296	22.077	22.029	22.101	-0.013731	1092	43	0.9644182	0.025644839	0.96289873	197.009	0	5.2386627						68	4	2	NaN	NaN	NaN	0.84876	1	2918	2918		0.39566	0	1	5658.2			13715	6325	7917	8081	10846	10846					-0.05383573912911288
LGAGGGAN	8	Unmodified	_LGAGGGAN_					0	0	0		ENSG00000146360|ENST00000275169|GPR6;nc|ENSG00000146360|P46095-2|GPR6	ENSG00000146360|ENST00000275169|GPR6	ENSG00000146360|ENST00000275169|GPR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3049150505	1	616.304915	615.297639	0.3752	0.00023124	-1.5311	-0.00094362	-1.1559	-0.00071238	616.3004466448699	33.311	0.024143	33.311	33.287	33.311	0	1152	64	0.92775106	0.038556516	0.92775106	189.95656	0	7.8944244						64	2	2	NaN	NaN	NaN	0.84876	1	1018	1018		0.39566	0	1	6225			13716	3561	7918	8082	10847	10847					-0.025398329848599133
LGAGLAVPF	9	Unmodified	_LGAGLAVPF_					0	0	0		ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.74999614375	2	422.749996	843.485439	1.244	0.0005259	-2.3595	-0.0009975	-1.1155	-0.00047159	422.7486796043161	30.463	0.12066	30.463	30.439	30.56	0	1284	97	0.8468043	0.059068024	0.8468043	344.71597	0	24.045319						144	6	3	NaN	NaN	NaN	0.36886	1	5316	5316		15.013	0	1	16000			13717	6591	7919	8083	10848	10848					0.05743605219709025
LGAGLAVPF	9	Unmodified	_LGAGLAVPF_					0	0	0		ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.74999614375	2	422.749996	843.485439	0.69132	0.00029226	-1.1845	-0.00050076	-0.4932	-0.0002085	422.7495107885386	30.462	0.096533	30.456	30.432	30.529	-0.0057545	1278	103	0.85049206	0.06275302	0.8489726	346.2172	0	25.54538						211	5	3	NaN	NaN	NaN	0.36886	1	5183	5183		15.013	0	1	26854			13718	6591	7919	8083	10849	10849					0.05743605219709025
LGAGLAVPF	9	Unmodified	_LGAGLAVPF_					0	0	0		ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	ENST00000359534.3_1_6:39159395-39159479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4927158209001	1	844.492716	843.485439	0.71357	0.0006026	0.074754	6.313E-05	0.78832	0.00066573	844.4925364391089	30.462	0.12065	30.456	30.432	30.553	-0.0057545	375	127	1.3965509	0.075069785	1.3950315	284.25848	0	15.279968						290	6	2	NaN	NaN	NaN	0.024982	1	5184	5184		65.676	2.3661	1	47226			13719	6591	7919	8083	10850	10850					0.05743605219709025
LGAGQPSV	8	Unmodified	_LGAGQPSV_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.3937300578001	1	728.39373	727.386454	-0.10515	-7.6594E-05	7.0942	0.0051674	6.9891	0.0050908	728.3982159562835	56.347	0.071957	56.346	56.322	56.394	-0.00056458	507	55	1.3178225	0.032292962	1.316303	268.91928	0	6.589813						96	4	2	NaN	NaN	NaN	0.84692	1	3642	3642		1.4396	0	1	5817	+		13720	8525	7920	8084	10851	10851					0.011855822548113792
LGAGWIAPA	9	Unmodified	_LGAGWIAPA_					0	0	0			REV__ENST00000317459.10_1_11:63993282-63993594:-|nuORF	REV__ENST00000317459.10_1_11:63993282-63993594:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.2397955981999	2	428.239796	854.465038	1.1209	0.00048003	-1.7377	-0.00074415	-0.61676	-0.00026412	428.2390235465053	20.285	0.096249	20.271	20.246	20.343	-0.014141	1404	88	0.77288127	0.05374825	0.7713618	314.5588	0	21.875275						139	5	2	NaN	NaN	NaN	0.58547	1	5324	5324		6.0903	0	1	15205	+		13721	11707	7921	8085	10852	10852					0.031984345598857544
LGALGRGA	8	Unmodified	_LGALGRGA_					0	0	0			REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.4256988882	1	714.425699	713.418422	2.1579	0.0015417	-6.7934	-0.0048533	-4.6354	-0.0033117	714.4205138452774	29.835	0.072371	29.828	29.803	29.876	-0.0070667	579	28	1.2747238	0.016183615	1.2732043	260.21866	0	3.3036804						39	4	2	NaN	NaN	NaN	0.84207	1	3418	3418		3.5732	0	1	1991.2	+		13722	12484	7922	8086	10853	10853					0.0502499472860336
LGALGRGA	8	Unmodified						0	0	0			REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	714.425699	713.418422	2.1579	0.0015417	-6.7934	-0.0048533	-4.6354	-0.0033117	714.4205138452774	29.835	0.072371	29.828	29.803	29.876	-0.0070667	579	28	1.2747238	0.016183615	1.2732043	260.21866		3.3036804	-0.0039745	0.00032232	0.00013937	NaN	3.5732	39	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1991.2	+		13723	12484	7922	8086							0.0502499472860336
LGALNIFSFI	10	Unmodified	_LGALNIFSFI_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|303|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|303|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|303|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.8158673710001	2	547.815867	1093.61718	1.3428	0.00073562	-2.6854	-0.0014711	-1.3426	-0.00073547	547.8144575316517	38.922	0.14413	38.927	38.879	39.023	0.0046806	1212	37	0.8910048	0.0220716	0.88948536	361.37885	0	8.951935						134	7	3	NaN	NaN	NaN	0.13037	1	12249	12249		41.785	10.223	1	13992			13724	7857	7923	8087	10854	10854					0.07411790516812289
LGAPTYIPTL	10	Unmodified	_LGAPTYIPTL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.592823796	1	1045.59282	1044.58555	1.1396	0.0011915	0.50688	0.00052999	1.6464	0.0017215	1045.5926546038947	33.962	0.12063	33.962	33.938	34.059	0	123	70	1.5458313	0.040699005	1.5458313	313.6705	0	8.258392						158	6	3	NaN	NaN	NaN	0.21269	1	10418	10418		34.439	7.1426	1	14405			13725	3883;7967	7924	8088	10855	10855					0.06503797762843533
LGASTTSS	8	Unmodified	_LGASTTSS_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3519248226	1	723.351925	722.344648	1.4842	0.0010736	7.2702	0.0052589	8.7544	0.0063325	723.3567570246604	23.634	0.072325	23.634	23.634	23.706	0	591	64	1.26753	0.037785888	1.26753	258.6898	0	7.7117157						117	4	2	NaN	NaN	NaN	0.84692	1	3640	3640		1.4396	0	1	14194			13726	3725	7925	8089	10856	10856					-0.027630182243797208
LGASVFFI	8	Unmodified	_LGASVFFI_					0	0	0			REV__ENSG00000006116|ENST00000005284|CACNG3	REV__ENSG00000006116|ENST00000005284|CACNG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	853.4818167836	1	853.481817	852.47454	1.2245	0.0010451	0.27683	0.00023627	1.5013	0.0012814	853.4815181639148	36.613	0.09621	36.615	36.591	36.687	0.0016785	402	49	1.3804773	0.028588891	1.3789579	280.9393	0	5.8180847						124	5	3	NaN	NaN	NaN	0.35933	1	5287	5287		38.608	0	1	12057	+		13727	8366	7926	8090	10857	10857					0.04240202845414842
LGATGHGG	8	Unmodified	_LGATGHGG_					0	0	0			REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	REV__tr|U7SKI2|U7SKI2_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02039PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3314641520002	1	669.331464	668.324188	1.4942	0.0010001	5.4359	0.0036384	6.9301	0.0046385	669.3348571400388	46.438	0.071888	46.438	46.438	46.509	0	501	55	1.3214091	0.032275796	1.3214091	270.09143	0	6.597046						95	4	2	NaN	NaN	NaN	0.84887	1	2554	2554		0.32989	0	1	11577	+		13728	13415	7927	8091	10858	10858					-0.02324144093506675
LGCGAAAA	8	Unmodified	_LGCGAAAA_					0	0	0		ENST00000464782.5_1_3:141772982-141868333:-|nuORF;ENST00000489671.5_2_3:141820662-141868333:-|nuORF;ENST00000475734.5_2_3:141724317-141868333:-|nuORF	ENST00000464782.5_1_3:141772982-141868333:-|nuORF	ENST00000464782.5_1_3:141772982-141868333:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.1548743380499	2	317.154874	632.295196	1.1359	0.00036024	-1.4878	-0.00047187	-0.35196	-0.00011163	317.15494443060516	41.689	0.12041	41.697	41.673	41.793	0.0082588	1533	124	0.6930556	0.076253355	0.6915362	283.6304	0	31.20642						422	6	3	NaN	NaN	NaN	0.84876	1	1445	1445		0.39566	0	1	53924			13729	7102	7928	8092	10859	10859					-0.03566004714184601
LGCGGGLV	8	Unmodified	_LGCGGGLV_					0	0	0			REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021001	1	675.349422	674.342146	1.0867	0.00073392	4.945	0.0033396	6.0318	0.0040735	675.3529301267315	26.915	0.24131	26.915	26.867	27.109	0	783	106	1.1520087	0.06334841	1.1520087	235.42442	0	12.945862						360	11	2	NaN	NaN	NaN	0.84651	1	2712	2712		1.6704	0	1	41762	+		13730	11603	7929	8093	10860	10860					-0.008051451630194606
LGCGVGAG	8	Unmodified	_LGCGVGAG_					0	0	0		ENSG00000130433|ENST00000252729|CACNG6	ENSG00000130433|ENST00000252729|CACNG6	ENSG00000130433|ENST00000252729|CACNG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805004	2	317.154874	632.295196	1.1431	0.00036255	-1.0876	-0.00034495	0.055487	1.7598E-05	317.154415094535	41.69	0.024044	41.69	41.69	41.714	0	1533	112	0.6930556	0.06882155	0.6930556	283.6304	0	28.164948						129	2	2	NaN	NaN	NaN	0.84651	1	1519	1519		1.6704	0	1	20888			13731	2642	7930	8094	10861	10861					-0.035660047141618634
LGDFLLEKEIQ	11	Unmodified	_LGDFLLEKEIQ_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.8584604672002	2	652.85846	1303.70237	1.1543	0.0007536	-0.99767	-0.00065134	0.15665	0.00010227	653.3582483855326	27.133	0.14482	27.133	27.06	27.205	0	1119	76	0.9479278	0.045826435	0.9479278	383.6941	0	18.549225						240	7	3	NaN	NaN	NaN	0.64656	1	18837	18837		10.965	0.72139	1	32399			13732	2820	7931	8095	10862	10862					0.06266491191968271
LGDFPVFF	8	Unmodified	_LGDFPVFF_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4767314057001	1	941.476731	940.469455	2.0391	0.0019197	0.023751	2.2361E-05	2.0628	0.0019421	941.4773156401909	36.565	0.096405	36.567	36.543	36.639	0.0016747	252	43	1.4695803	0.024885178	1.4680609	298.62805	0	5.0568237						77	5	2	NaN	NaN	NaN	0.65075	1	6690	6690		22.126	13.003	1	5882.1			13733	3602	7932	8096	10863	10863					-0.0031610101718797523
LGDSSGPAL	9	Unmodified	_LGDSSGPAL_					0	0	0		ENSG00000184640|ENST00000427177|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	ENSG00000184640|ENST00000427177|SEPTIN9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.4097740525	1	816.409774	815.402498	2.2893	0.001869	1.6048	0.0013102	3.8941	0.0031792	816.4110409723063	19.852	0.096077	19.852	19.804	19.9	0	501	43	1.3214091	0.025100708	1.3214091	269.11234	0	5.111908						75	5	2	NaN	NaN	NaN	0.27442	1	4961	4961		20.555	4.1388	1	5151.3			13734	5363	7933	8097	10864	10864					-0.01258756298955177
LGEDEDQYEQF	11	Unmodified	_LGEDEDQYEQF_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.7806040766999	2	686.780604	1371.54666	2.0777	0.0014269	5.2336	0.0035943	7.3113	0.0050213	686.7851944990086	21.802	0.048149	21.802	21.778	21.826	0	1116	40	0.94976085	0.023827195	0.94976085	384.23657	0	9.639526						110	3	4	NaN	NaN	NaN	0.66717	1	19810	19810		9.6116	3.1817	1	13372			13735	2629	7934	8098	10865	10865					-0.12425624120169232
LGEDEDQYEQF	11	Unmodified						0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	686.780604	1371.54666	1.5262	0.0010481	7.1132	0.0048852	8.6393	0.0059333	686.785289432413	21.802	0.048107	21.788	21.764	21.812	-0.013895	1119	40	0.9479278	0.023827195	0.94640833	383.495		9.639557	-0.007022	0.0012047	-0.0016762	NaN	9.6116	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12098			13736	2629	7934	8098							-0.12425624120169232
LGEELVAIV	9	Unmodified	_LGEELVAIV_					0	0	0		ENST00000473136.4_2_3:88108451-88184391:+|nuORF;ENSG00000175105|ENST00000636215|ZNF654	ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENST00000473136.4_2_3:88108451-88184391:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303	1	942.550625	941.543348	1.5157	0.0014286	-0.42878	-0.00040415	1.0869	0.0010245	942.5508272791816	28.073	0.19309	28.064	28.016	28.209	-0.0089779	282	82	1.4517976	0.04804647	1.4502782	295.00964	0	9.763184						317	9	3	NaN	NaN	NaN	0.078597	1	6717	6717		38.918	2.3314	1	96238			13737	4980	7935	8099	10866	10866					0.07023822354472031
LGEEQGKWW	9	Unmodified	_LGEEQGKWW_					0	0	0			REV__SLC2A14|p.I319Pfs*43|1|0.05|ENSG00000173262|chr12:7821304-7821305|-/GG|frameshift_variant	REV__SLC2A14|p.I319Pfs*43|1|0.05|ENSG00000173262|chr12:7821304-7821305|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378001	2	566.774731	1131.53491	1.8628	0.0010558	-6.4625	-0.0036628	-4.5996	-0.002607	567.2721621111237	18.698	0.095953	18.684	18.612	18.708	-0.014059	1239	43	0.87444305	0.025772452	0.8729236	354.51373	0	10.448608						84	5	2	NaN	NaN	NaN	0.56671	1	13677	13677		6.8632	0.613	1	7255.2	+		13738	13317	7936	8100	10867	10867					-0.025597315621325833
LGEKMVTAFT	10	Unmodified	_LGEKMVTAFT_					0	0	0		ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7889923060001	2	548.788992	1095.56343	1.8154	0.00099627	-7.5207	-0.0041273	-5.7053	-0.003131	548.7846149848808	23.248	0.072399	23.234	23.21	23.283	-0.013294	1191	34	0.90387505	0.020215929	0.9023556	366.59073	0	8.199097						69	4	3	NaN	NaN	NaN	0.77513	1	12324	12324		1.7022	0.26263	1	9391.6			13739	896	7937	8101	10868	10868					0.019472500227720957
LGFAKKSNET	10	Unmodified	_LGFAKKSNET_					0	0	0			REV__ENSG00000175267|ENST00000389398|VWA3A	REV__ENSG00000175267|ENST00000389398|VWA3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7956632451501	2	547.795663	1093.57677	1.6391	0.00089789	-1.2976	-0.0007108	0.34153	0.00018709	547.7969976816721	54.524	0.072334	54.524	54.5	54.572	0	1251	28	0.8670771	0.016574323	0.8670771	351.67426	0	6.72229						61	4	3	NaN	NaN	NaN	0.77421	1	12566	12566		1.9246	0	1	3131.4	+		13740	10724	7938	8102	10869	10869					0.03372824126381602
LGFAWLAIDGG	11	Unmodified	_LGFAWLAIDGG_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2952991043999	2	560.295299	1118.57605	1.4194	0.00079526	-1.5278	-0.00085604	-0.10848	-6.0778E-05	560.2941252606676	24.14	0.072359	24.127	24.103	24.175	-0.012749	1062	118	0.9827221	0.0712893	0.98120266	398.46738	0	28.905884						159	4	2	NaN	NaN	NaN	0.78138	1	13216	13216		0	0	1	15317	+		13741	12216	7939	8103	10870	10870					0.021500294772977213
LGFEQILDF	9	Unmodified	_LGFEQILDF_					0	0	0			REV__nc|ENSG00000124159|O95460-4|MATN4	REV__nc|ENSG00000124159|O95460-4|MATN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.28185737815	2	541.281857	1080.54916	2.5206	0.0013643	6.5939	0.0035692	9.1145	0.0049335	541.2851338511001	11.26	0.071893	11.26	11.212	11.284	0	1251	34	0.8670771	0.020259678	0.8670771	351.727	0	8.218262						50	4	2	NaN	NaN	NaN	0.54682	1	12017	12017		5.1889	1.6191	1	3265.2	+		13742	9373	7940	8104	10871	10871					0.012109208661286175
LGFGPGGW	8	Unmodified	_LGFGPGGW_					0	0	0		ENST00000369109.7_1_1:150239033-150239523:-|nuORF	ENST00000369109.7_1_1:150239033-150239523:-|nuORF	ENST00000369109.7_1_1:150239033-150239523:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.3882507494001	1	790.388251	789.380974	1.3386	0.001058	-10.495	-0.0082951	-9.1563	-0.0072371	790.3797779791206	26.818	0.096535	26.808	26.759	26.856	-0.010645	516	103	1.3124412	0.0610435	1.3109218	267.43198	0	12.438629						212	5	2	NaN	NaN	NaN	0.81214	1	4532	4532		7.5902	2.1244	1	19741			13743	6639	7941	8105	10872	10872					-0.02214096536999932
LGFGSGGG	8	Unmodified	_LGFGSGGG_					0	0	0		CON__Q5XQN5	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.15847127200004	2	326.158471	650.30239	-0.12146	-3.9616E-05	6.5473	0.0021355	6.4258	0.0020958	326.16111813833624	48.353	0.21568	48.358	48.262	48.478	0.004818	1536	43	0.69119483	0.02605325	0.6896754	282.7036	0	10.655975						199	10	4	NaN	NaN	NaN	0.84876	1	1966	1966		0.39566	0	1	23742		+	13744	219	7942	8106	10873	10873					-0.03674948842080994
LGFLVSGL	8	Unmodified	_LGFLVSGL_					0	0	0		nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;ENSG00000111700|ENST00000381545|SLCO1B3	nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.2445466251	2	403.244547	804.47454	1.1836	0.00047729	-2.8611	-0.0011537	-1.6775	-0.00067644	403.2434643671794	24.526	0.096539	24.514	24.489	24.586	-0.012392	1395	46	0.7784366	0.027770698	0.77691716	317.13065	0	11.313629						88	5	3	NaN	NaN	NaN	0.80692	1	4712	4712		8.2903	0	1	12896			13745	1829	7943	8107	10874	10874					0.06448202845422202
LGGAGGGA	8	Unmodified	_LGGAGGGA_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2834513269	1	559.283451	558.276175	1.0078	0.00056363	-4.4051	-0.0024637	-3.3974	-0.0019001	559.2810556669257	30.052	0.19306	30.045	29.973	30.166	-0.0064106	1230	70	0.8799654	0.042319894	0.878446	180.57137	0	8.684174						191	9	2	NaN	NaN	NaN	0.84651	1	452	452		1.6704	0	1	27697			13746	567	7944	8108	10875	10875					-0.020632180135748968
LGGALGLA	8	Unmodified	_LGGALGLA_					0	0	0		ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.4086518404999	1	671.408652	670.401375	1.4257	0.0009572	-1.7743	-0.0011913	-0.34869	-0.00023411	671.40763371136	23.899	0.096447	23.899	23.875	23.971	0	669	40	1.2206948	0.023448944	1.2206948	249.49031	0	4.792572						88	5	2	NaN	NaN	NaN	0.77734	1	2612	2612		12.26	0	1	7758.1			13747	5196	7945	8109	10876	10876					0.05299074122797265
LGGEGHGG	8	Unmodified	_LGGEGHGG_					0	0	0			REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3107287099002	1	683.310729	682.303452	1.3419	0.00091692	-8.2118	-0.0056112	-6.8699	-0.0046943	683.3045136256959	27.977	0.072405	27.968	27.943	28.016	-0.0089798	621	73	1.2495319	0.04324162	1.2480124	255.29507	0	8.834808						104	4	2	NaN	NaN	NaN	0.81807	1	2797	2797		6.794	3.2208	1	8779.7	+		13748	13590	7946	8110	10877	10877					-0.050407344731752346
LGGEGHGG	8	Unmodified						0	0	0			REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	683.310729	682.303452	1.3419	0.00091692	-8.2118	-0.0056112	-6.8699	-0.0046943	683.3045136256959	27.977	0.072405	27.968	27.943	28.016	-0.0089798	621	73	1.2495319	0.04324162	1.2480124	255.29507		8.834808	0.007194	-0.00026094	-0.00075972	NaN	6.794	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8779.7	+		13749	13590	7946	8110							-0.050407344731752346
LGGGFPIF	8	Unmodified	_LGGGFPIF_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4399519689	1	807.439952	806.432676	2.0526	0.0016573	3.1175	0.0025172	5.1701	0.0041745	807.44279700243	36.228	0.38549	36.229	36.157	36.542	0.0011024	429	133	1.3643885	0.07878721	1.362869	277.91653	0	16.0484						734	17	4	NaN	NaN	NaN	0.71635	1	4751	4751		18.034	0	1	213800	+		13750	8755	7947	8111	10878	10878					0.02171647156887957
LGGGGGLV	8	Unmodified	_LGGGGGLV_					0	0	0		ENST00000409975.5_2_2:99225129-99225246:+|nuORF;ENST00000357765.6_1_2:99225129-99226362:+|nuORF	ENST00000409975.5_2_2:99225129-99225246:+|nuORF	ENST00000409975.5_2_2:99225129-99225246:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.3617016479001	1	629.361702	628.354425	1.7169	0.0010805	-3.4109	-0.0021467	-1.694	-0.0010662	629.3602857634595	55.701	0.096409	55.701	55.677	55.773	0	651	148	1.2315145	0.08831823	1.2315145	252.03822	0	18.074951						280	5	3	NaN	NaN	NaN	0.84651	1	1376	1376		1.6704	0	1	29300			13751	6580	7948	8112	10879	10879					0.025382145716662308
LGGGLLDV	8	Unmodified	_LGGGLLDV_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.21852883985	2	372.218529	742.422505	2.2763	0.00084727	-0.67773	-0.00025226	1.5985	0.000595	372.2180370547985	18.77	0.071997	18.756	18.708	18.78	-0.014059	1407	67	0.77102906	0.04077238	0.7695096	314.552	0	16.633667						60	4	2	NaN	NaN	NaN	0.84692	1	3876	3876		1.4396	0	1	5135.7	+		13752	8368	7949	8113	10880	10880					0.040990394316736456
LGGGLLDV	8	Unmodified						0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	372.218529	742.422505	2.1072	0.00078433	0.43147	0.0001606	2.5386	0.00094493	372.2185442523701	18.748	0.071928	18.748	18.724	18.796	0	1407	40	0.77102906	0.024080992	0.77102906	314.552		9.824158	-0.0036586	0.0004666	0.00075972	NaN	1.4396	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5274.7	+		13753	8368	7949	8113							0.040990394316736456
LGGGLLDV	8	Unmodified						0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	372.218529	742.422505	2.2763	0.00084727	-0.67773	-0.00025226	1.5985	0.000595	372.2180370547985	18.77	0.071997	18.756	18.708	18.78	-0.014059	1407	67	0.77102906	0.04077238	0.7695096	314.552		16.633667	0.0036586	-0.00035913	-0.00075972	NaN	1.4396	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5135.7	+		13754	8368	7949	8113							0.040990394316736456
LGGGRGHG	8	Unmodified	_LGGGRGHG_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3692466418001	1	710.369247	709.36197	1.4695	0.0010439	3.3983	0.0024141	4.8679	0.003458	710.3722321736403	19.924	0.048147	19.924	19.9	19.948	0	609	46	1.2567334	0.0270015	1.2567334	256.57373	0	5.5126038						58	3	2	NaN	NaN	NaN	0.84692	1	3415	3415		1.4396	0	1	5045.6	+		13755	11139	7950	8114	10881	10881					-0.004336331080480704
LGGGRGHG	8	Unmodified	_LGGGRGHG_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3692466418001	1	710.369247	709.36197	1.4201	0.0010088	4.1304	0.0029341	5.5505	0.0039429	710.3729972294174	19.948	0.19257	19.934	19.861	20.054	-0.014141	609	40	1.2567334	0.023398757	1.255214	256.5737	0	4.7770844						113	9	2	NaN	NaN	NaN	0.84876	1	3350	3350		0.39566	0	1	7456.2	+		13756	11139	7950	8114	10882	10882					-0.004336331080480704
LGGGRGHG	8	Unmodified						0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	710.369247	709.36197	1.4695	0.0010439	3.3983	0.0024141	4.8679	0.003458	710.3722321736403	19.924	0.048147	19.924	19.9	19.948	0	609	46	1.2567334	0.0270015	1.2567334	256.57373		5.5126038	-0.004584	-0.00026422	0.00075972	NaN	1.4396	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5045.6	+		13757	11139	7950	8114							-0.004336331080480704
LGGGRGHG	8	Unmodified						0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.369247	709.36197	1.4201	0.0010088	4.1304	0.0029341	5.5505	0.0039429	710.3729972294174	19.948	0.19257	19.934	19.861	20.054	-0.014141	609	40	1.2567334	0.023398757	1.255214	256.5737		4.7770844	0.004584	0.0002558	-0.00075972	NaN	1.4396	113	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7456.2	+		13758	11139	7950	8114							-0.004336331080480704
LGGGTTVT	8	Unmodified	_LGGGTTVT_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3777456426	1	705.377746	704.370469	1.2807	0.00090337	2.9601	0.002088	4.2408	0.0029914	705.3809812060193	55.725	0.072357	55.725	55.701	55.773	0	666	40	1.2224985	0.023448944	1.2224985	249.61787	0	4.7879486						65	4	2	NaN	NaN	NaN	0.84887	1	3294	3294		0.32989	0	1	6080.3			13759	792	7951	8115	10883	10883					0.006458760178929879
LGGIGMGL	8	Unmodified	_LGGIGMGL_					0	0	0		nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM;ENST00000561301.5_1_15:48444377-48451083:-|nuORF;ENST00000561351.5_1_15:48445959-48458174:-|nuORF;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2;USP8-MYEF2|1|fusion	nc|ENSG00000099783|P52272-2|HNRNPM;USP8-MYEF2|1|fusion	USP8-MYEF2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3963725947	1	717.396373	716.389096	1.0977	0.00078747	8.0633	0.0057846	9.161	0.0065721	717.401466414638	27.302	0.12071	27.302	27.277	27.398	0	639	40	1.2387238	0.023423791	1.2387238	252.84987	0	4.781296						81	6	2	NaN	NaN	NaN	0.81214	1	3542	3542		7.5902	0	1	6102.9			13760	1161;14017	7952	8116	10884	10884					0.019557143881002048
LGGIPVAGI	9	Unmodified	_LGGIPVAGI_					0	0	0		nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-8|CNOT4	nc|ENSG00000080802|O95628-8|CNOT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.4927158209001	1	796.492716	795.485439	1.6232	0.0012928	-0.024046	-1.9152E-05	1.5991	0.0012737	796.492273895997	26.842	0.072426	26.832	26.808	26.88	-0.010645	498	58	1.3232021	0.034056187	1.3216827	269.58926	0	6.9385986						81	4	2	NaN	NaN	NaN	0.26823	1	4608	4608		20.952	0	1	6290.7			13761	7913	7953	8117	10885	10885					0.07951605219716384
LGGIPVAGI	9	Unmodified						0	0	0		nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-8|CNOT4	nc|ENSG00000080802|O95628-8|CNOT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	796.492716	795.485439	1.6832	0.0013406	0.17848	0.00014216	1.8617	0.0014828	796.4928656918419	26.819	0.072405	26.819	26.795	26.867	0	498	37	1.3232021	0.021512508	1.3232021	269.58926		4.3829956	-0.0063252	7.0435E-05	0.00075972	NaN	20.952	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5023.8			13762	7913	7953	8117							0.07951605219716384
LGGISGAL	8	Unmodified	_LGGISGAL_					0	0	0			REV__ENSG00000163393|ENST00000369503|SLC22A15	REV__ENSG00000163393|ENST00000369503|SLC22A15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.4035664626	1	687.403566	686.39629	1.8858	0.0012963	-0.62175	-0.00042739	1.264	0.00086888	687.4029943548599	21.031	0.24077	21.031	20.983	21.224	0	630	100	1.2441287	0.059485912	1.2441287	254.16129	0	12.152283						389	11	3	NaN	NaN	NaN	0.69631	1	2959	2959		19.285	0	1	86836	+		13763	10278	7954	8118	10886	10886					0.04054770260177065
LGGRERTP	8	Unmodified	_LGGRERTP_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.24868326280006	2	443.248683	884.482814	1.2463	0.00055242	0.3369	0.00014933	1.5832	0.00070176	443.24847370981297	16.278	0.072027	16.278	16.254	16.326	0	1398	85	0.77658504	0.05180216	0.77658504	315.8967	0	21.07193						95	4	2	NaN	NaN	NaN	0.84455	1	5866	5866		2.7852	0	1	7953.4	+		13764	8359	7955	8119	10887	10887					0.035951498147596794
LGGRERTP	8	Unmodified						0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	443.248683	884.482814	1.2463	0.00055242	0.3369	0.00014933	1.5832	0.00070176	443.24847370981297	16.278	0.072027	16.278	16.254	16.326	0	1398	85	0.77658504	0.05180216	0.77658504	315.8967		21.07193	-0.004	-0.0002358	0.00075972	NaN	2.7852	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7953.4	+		13765	8359	7955	8119							0.035951498147596794
LGGSGKGG	8	Unmodified	_LGGSGKGG_					0	0	0			REV__nc|ENSG00000145730|P19021-6|PAM	REV__nc|ENSG00000145730|P19021-6|PAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3362151789001	1	632.336215	631.328939	1.1375	0.0007193	6.4428	0.004074	7.5804	0.0047933	632.3400720535518	30.8	0.14483	30.794	30.77	30.915	-0.0057545	714	70	1.1936152	0.04156649	1.1920958	244.25734	0	8.506027						186	7	3	NaN	NaN	NaN	0.84876	1	1433	1433		0.39566	0	1	16254	+		13766	13136	7956	8120	10888	10888					-0.0014725995075650644
LGGSPSDA	8	Unmodified	_LGGSPSDA_					0	0	0		nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A	nc|ENSG00000101076|P41235-6|HNF4A	nc|ENSG00000101076|P41235-6|HNF4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3257100720999	1	703.32571	702.318434	1.2196	0.00085778	-4.8626	-0.00342	-3.643	-0.0025622	703.3218673604349	55.22	0.072262	55.22	55.196	55.268	0	669	103	1.2206948	0.061285257	1.2206948	249.26349	0	12.514328						88	4	2	NaN	NaN	NaN	0.84727	1	3251	3251		1.2418	0	1	13384			13767	1297	7957	8121	10889	10889					-0.0446328739586761
LGGSSLTE	8	Unmodified	_LGGSSLTE_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3832249509999	1	763.383225	762.375948	1.4609	0.0011152	-8.5488	-0.006526	-7.0879	-0.0054108	763.3764899025041	29.039	0.12071	29.039	28.991	29.112	0	630	64	1.2441287	0.037810087	1.2441287	253.66557	0	7.7091217						148	6	3	NaN	NaN	NaN	0.82332	1	4243	4243		6.0903	0	1	9934.4			13768	5535	7958	8122	10890	10890					-0.014744451902970468
LGGSTGGG	8	Unmodified	_LGGSTGGG_					0	0	0			REV__BPIFA1|p.L88H|1|0.19|ENSG00000198183|chr20:33238157-33238157|T/A|missense_variant	REV__BPIFA1|p.L88H|1|0.19|ENSG00000198183|chr20:33238157-33238157|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2889306353001	1	605.288931	604.281654	1.4313	0.00086632	-2.4079	-0.0014574	-0.97661	-0.00059113	605.2861980593849	23.079	0.14455	23.065	23.017	23.162	-0.013294	1182	46	0.9093879	0.027558208	0.90786844	186.27036	0	5.64476						57	7	2	NaN	NaN	NaN	0.84692	1	659	659		1.4396	0	1	6780	+		13769	8164	7959	8123	10891	10891					-0.036315392217602493
LGGSVTLI	8	Unmodified	_LGGSVTLI_					0	0	0			REV__nc|ENSG00000127329|P23467-2|PTPRB	REV__nc|ENSG00000127329|P23467-2|PTPRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4610813415001	1	759.461081	758.453805	1.5827	0.001202	0.040755	3.0952E-05	1.6235	0.0012329	759.4607577936398	26.746	0.048326	26.746	26.722	26.77	0	582	37	1.2729256	0.021579266	1.2729256	259.56067	0	4.4002075						56	3	2	NaN	NaN	NaN	0.72043	1	4200	4200		17.78	0	1	4114.6	+		13770	9434	7960	8124	10892	10892					0.06491612465754315
LGGVTFLF	8	Unmodified	_LGGVTFLF_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	853.4818167836002	1	853.481817	852.47454	1.3869	0.0011837	-0.03521	-3.0051E-05	1.3517	0.0011537	853.4819286689045	32.393	0.072399	32.389	32.365	32.437	-0.0037613	417	37	1.3715409	0.021450758	1.3700215	279.12067	0	4.365448						56	4	2	NaN	NaN	NaN	0.84692	1	5286	5286		1.4396	0	1	3336	+		13771	11191	7961	8125	10893	10893					0.04240202845426211
LGGWTGHTFG	10	Unmodified	_LGGWTGHTFG_					0	0	0		ENSG00000257108|ENST00000424439|NHLRC4	ENSG00000257108|ENST00000424439|NHLRC4	ENSG00000257108|ENST00000424439|NHLRC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7485160873001	2	516.748516	1031.48248	2.0275	0.0010477	-0.077107	-3.9845E-05	1.9504	0.0010078	516.7485326434007	19.78	0.2163	19.78	19.732	19.948	0	1320	58	0.824661	0.035077274	0.824661	334.72128	0	14.237518						191	10	3	NaN	NaN	NaN	0.72631	1	9833	9833		6.2502	0.15988	1	18439			13772	6128	7962	8126	10894	10894					-0.0320026990509632
LGGWTGHTFG	10	Unmodified						0	0	0		ENSG00000257108|ENST00000424439|NHLRC4	ENSG00000257108|ENST00000424439|NHLRC4	ENSG00000257108|ENST00000424439|NHLRC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.748516	1031.48248	1.4191	0.00073332	0.59456	0.00030724	2.0137	0.0010406	516.7494234817026	19.803	0.096277	19.789	19.741	19.837	-0.014141	1323	43	0.8228144	0.025850594	0.82129496	333.97177		10.492493	0.0045148	0.00045038	-0.001683	NaN	6.2502	106	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12021			13773	6128	7962	8126							-0.0320026990509632
LGGYAGFP	8	Unmodified	_LGGYAGFP_					0	0	0			REV__ENSG00000167315|ENST00000285093|ACAA2	REV__ENSG00000167315|ENST00000285093|ACAA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.1975964325	2	391.197596	780.38064	1.1625	0.00045478	-5.9914	-0.0023438	-4.8289	-0.001889	391.1951904951444	29.039	0.21721	29.039	28.943	29.16	0	1410	79	0.76917666	0.04820639	0.76917666	313.52014	0	19.64917						135	10	2	NaN	NaN	NaN	0.84651	1	4494	4494		1.6704	0	1	13018	+		13774	10461	7963	8127	10895	10895					-0.01833516256851908
LGHEEALEM	9	Oxidation (M)	_LGHEEALEM(Oxidation (M))_		LGHEEALEM(1)		LGHEEALEM(44)	0	0	1		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7369567355	2	522.736957	1043.45936	1.162	0.00060743	0.24037	0.00012565	1.4024	0.00073308	522.737218497967	14.596	0.1437	14.585	14.561	14.704	-0.011219	1317	55	0.8265074	0.033225775	0.82498795	335.42	0	13.483948						165	7	4	NaN	NaN	NaN	0.056143	1	10141	10141		44.302	10.604	1	20913			13775	5676	7964	8128	10896	10896		580			-0.06063076804730372
LGHEEDYAL	9	Unmodified	_LGHEEDYAL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7430963584	2	523.743096	1045.47164	2.2201	0.0011628	-1.3946	-0.00073041	0.82551	0.00043235	523.7424219865649	18.364	0.21589	18.364	18.268	18.484	0	1284	61	0.8468043	0.036889493	0.8468043	343.64847	0	14.970428						402	10	4	NaN	NaN	NaN	0.056143	1	10428	10428		44.302	14.704	1	97158			13776	4867	7965	8129	10897	10897					-0.04927717070063409
LGHEEDYAL	9	Unmodified	_LGHEEDYAL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67051750-67052658:+|nuORF;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7430963584	2	523.743096	1045.47164	2.0961	0.0010978	-1.1117	-0.00058224	0.98439	0.00051557	523.7424533482733	18.386	0.16812	18.372	18.324	18.492	-0.01395	1284	58	0.8468043	0.03504312	0.8452849	343.64847	0	14.221161						304	8	3	NaN	NaN	NaN	0.043119	1	10218	10218		49.833	8.0484	1	100240			13777	4867	7965	8129	10898	10898					-0.04927717070063409
LGHEEVVTL	9	Unmodified	_LGHEEVVTL_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77165683260006	2	498.771657	995.528761	1.7237	0.00085976	-5.4528	-0.0027197	-3.7291	-0.00186	498.7712370888463	20.165	0.14416	20.165	20.093	20.237	0	1311	52	0.83019954	0.031374753	0.83019954	337.12958	0	12.740753						268	7	4	NaN	NaN	NaN	0.094712	1	8413	8413		36.586	6.9881	1	46385			13778	1995	7966	8130	10899	10899					0.030817502063428037
LGHEEVVTL	9	Unmodified	_LGHEEVVTL_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.77165683260006	2	498.771657	995.528761	1.2419	0.00061943	-1.9053	-0.00095032	-0.66339	-0.00033088	498.77163157588893	20.164	0.14441	20.15	20.102	20.246	-0.014143	1311	58	0.83019954	0.03506595	0.8286801	337.12955	0	14.239655						205	7	3	NaN	NaN	NaN	0.14301	1	8244	8244		29.598	6.2639	1	43679			13779	1995	7966	8130	10900	10900					0.030817502063428037
LGIPALGIVL	10	Unmodified	_LGIPALGIVL_					0	0	0		ENST00000487137.6_1_14:23516386-23516554:-|nuORF	ENST00000487137.6_1_14:23516386-23516554:-|nuORF	ENST00000487137.6_1_14:23516386-23516554:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.6393800581001	1	965.63938	964.632104	1.5603	0.0015066	-0.94928	-0.00091667	0.61097	0.00058998	965.639052430307	35.866	0.024097	35.867	35.867	35.891	0.0011024	219	55	1.4891195	0.031957865	1.4876001	302.48914	0	6.491699						56	2	2	NaN	NaN	NaN	0.6337	1	7324	7324		12.588	4.2976	1	3825.6			13780	7242	7967	8131	10901	10901					0.1483728238479216
LGKAPEPG	8	Unmodified	_LGKAPEPG_					0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.4250301862	1	768.42503	767.417754	1.8127	0.0013929	-1.1261	-0.00086535	0.68654	0.00052756	768.4229184277712	26.65	0.048279	26.65	26.625	26.674	0	591	43	1.26753	0.025181174	1.26753	258.40683	0	5.133606						57	3	2	NaN	NaN	NaN	0.83211	1	4325	4325		4.9097	0	1	3429.6	+		13781	10832	7968	8132	10902	10902					0.02474155288905422
LGKAPEPG	8	Unmodified						0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	768.42503	767.417754	1.8127	0.0013929	-1.1261	-0.00086535	0.68654	0.00052756	768.4229184277712	26.65	0.048279	26.65	26.625	26.674	0	591	43	1.26753	0.025181174	1.26753	258.40683		5.133606	0.005483	-0.00070983	0.00075972	NaN	4.9097	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3429.6	+		13782	10832	7968	8132							0.02474155288905422
LGKAPEPG	8	Unmodified						0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	768.42503	767.417754	1.9866	0.0015265	0.33549	0.0002578	2.3221	0.0017843	768.4249105821589	26.649	0.048277	26.639	26.614	26.663	-0.010645	591	58	1.26753	0.034169078	1.2660105	258.4068		6.965912	-0.005483	0.00041331	-0.00075972	NaN	4.9097	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3591.2	+		13783	10832	7968	8132							0.02474155288905422
LGKGGFGT	8	Unmodified	_LGKGGFGT_					0	0	0		ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.3988154357002	1	736.398815	735.391539	1.4085	0.0010372	0.36127	0.00026604	1.7698	0.0013033	736.3993201208401	27.543	0.048288	27.543	27.519	27.567	0	621	37	1.2495319	0.021609306	1.2495319	254.93236	0	4.408783						52	3	2	NaN	NaN	NaN	0.82797	1	3832	3832		5.4659	1.8926	1	3958.1			13784	1361	7969	8133	10903	10903					0.013258861174335834
LGLGETPL	8	Unmodified	_LGLGETPL_					0	0	0			REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4559959636	1	799.455996	798.448719	1.6515	0.0013203	0.5481	0.00043818	2.1996	0.0017585	799.4557491083718	24.285	0.048267	24.285	24.285	24.333	0	495	43	1.3249949	0.025097966	1.3249949	269.93753	0	5.1131287						54	3	2	NaN	NaN	NaN	0.76633	1	4737	4737		13.737	0	1	4404.5	+		13785	11836	7970	8134	10904	10904					0.0414330860313612
LGLGETPL	8	Unmodified						0	0	0			REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	799.455996	798.448719	1.6515	0.0013203	0.5481	0.00043818	2.1996	0.0017585	799.4557491083718	24.285	0.048267	24.285	24.285	24.333	0	495	43	1.3249949	0.025097966	1.3249949	269.93753		5.1131287	-0.0055563	0.0011223	0.00075972	NaN	13.737	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4404.5	+		13786	11836	7970	8134							0.0414330860313612
LGLGETPL	8	Unmodified						0	0	0			REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	REV__ENST00000359595.7_2_15:89420682-89421018:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	799.455996	798.448719	2.1566	0.0017241	-2.2557	-0.0018033	-0.099109	-7.9233E-05	799.4541187733107	24.309	0.048285	24.296	24.272	24.32	-0.012749	495	40	1.3249949	0.023306489	1.3234755	269.93753		4.748169	0.0055563	-0.0011192	-0.00075972	NaN	13.737	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3877.1	+		13787	11836	7970	8134							0.0414330860313612
LGLGLTTT	8	Unmodified	_LGLGLTTT_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.4559959636	1	775.455996	774.448719	0.45168	0.00035026	5.8759	0.0045565	6.3276	0.0049068	775.4600926965312	46.652	0.095924	46.662	46.59	46.686	0.0098152	345	46	1.4143922	0.026749372	1.4128729	288.30112	0	5.452423						82	5	2	NaN	NaN	NaN	0.84692	1	4350	4350		1.4396	0	1	4771.6			13788	84	7971	8135	10905	10905					0.052473086031341154
LGLGLTTT	8	Unmodified						0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.455996	774.448719	1.791	0.0013889	5.2713	0.0040876	7.0623	0.0054765	775.4593089755159	46.677	0.095871	46.677	46.605	46.701	0	348	49	1.412609	0.028534174	1.412609	287.93762		5.816223	0.0078196	-0.00026022	-0.00013193	NaN	1.4396	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4765.7			13789	84	7971	8135							0.052473086031341154
LGLMGAGG	8	Unmodified	_LGLMGAGG_					0	0	0		ENSG00000137038|ENST00000358227|DMAC1;nc|ENSG00000137038|Q96GE9|DMAC1	ENSG00000137038|ENST00000358227|DMAC1	ENSG00000137038|ENST00000358227|DMAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021002	1	675.349422	674.342146	0.96756	0.00065344	3.8651	0.0026103	4.8327	0.0032638	675.3516122086119	24.381	0.12065	24.381	24.285	24.406	0	753	130	1.1701111	0.07776952	1.1701111	239.12384	0	15.89299						311	6	2	NaN	NaN	NaN	0.84876	1	2711	2711		0.39566	0	1	24182			13790	3063	7972	8136	10906	10906					-0.008051451630080919
LGLSYKVQW	9	Unmodified	_LGLSYKVQW_					0	0	0		ENST00000562053.1_1_15:43689449-43690378:+|nuORF;ENST00000563963.1_1_15:43687726-43694213:+|nuORF;ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3056668254501	2	547.305667	1092.59678	2.0115	0.0011009	-7.7102	-0.0042199	-5.6987	-0.0031189	547.8018884108799	25.612	0.14473	25.6	25.552	25.696	-0.0116	1236	94	0.876284	0.05709541	0.8747646	355.41245	0	23.157349						239	7	2	NaN	NaN	NaN	0.12328	1	12196	12196		32.453	8.6023	1	67096			13791	3110	7973	8137	10907	10907					0.05418619857005069
LGLSYKVQW	9	Unmodified						0	0	0		ENST00000562053.1_1_15:43689449-43690378:+|nuORF;ENST00000563963.1_1_15:43687726-43694213:+|nuORF;ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.305667	1092.59678	2.1148	0.0011574	-10.359	-0.0056694	-8.244	-0.004512	547.2996805827123	25.757	0.07239	25.757	25.757	25.829	0	1218	37	0.8873258	0.022078753	0.8873258	359.8909		8.954956	0.078302	-0.0016777	0.0062806	NaN	32.453	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2326.6			13792	3110	7973	8137							0.05418619857005069
LGNISGGH	8	Unmodified	_LGNISGGH_					0	0	0		ENSG00000103375|ENST00000219660|AQP8	ENSG00000103375|ENST00000219660|AQP8	ENSG00000103375|ENST00000219660|AQP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3842280040002	1	754.384228	753.376952	1.6593	0.0012518	-0.10985	-8.2871E-05	1.5495	0.0011689	754.3843093615892	56.804	0.07217	56.804	56.78	56.852	0	432	64	1.3625998	0.037568927	1.3625998	277.87927	0	7.66156						80	4	2	NaN	NaN	NaN	0.84727	1	4121	4121		1.2418	0	1	8123.6			13793	1437	7974	8138	10908	10908					-0.009601860307043353
LGPEPRASSS	10	Unmodified	_LGPEPRASSS_					0	0	0		ENST00000594919.1_1_19:52839677-52851056:+|nuORF	ENST00000594919.1_1_19:52839677-52851056:+|nuORF	ENST00000594919.1_1_19:52839677-52851056:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.75653808465	2	500.756538	999.498523	0.81612	0.00040868	0.014798	7.41E-06	0.83092	0.00041609	500.75626494419174	32.224	0.072395	32.22	32.196	32.268	-0.0037613	1317	34	0.8265074	0.020307899	0.82498795	335.61206	0	8.246246						66	4	2	NaN	NaN	NaN	0.74854	1	8384	8384		4.7291	0.31598	1	7481			13794	7749	7975	8139	10909	10909					-0.001246084588501617
LGPGPFPH	8	Unmodified	_LGPGPFPH_					0	0	0			REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.21886319084996	2	411.218863	820.423173	1.4674	0.00060344	-2.7407	-0.001127	-1.2733	-0.0005236	411.2174086243226	26.336	0.14477	26.324	26.276	26.421	-0.011137	1344	46	0.8098828	0.027722597	0.8083634	329.83423	0	11.290375						132	7	2	NaN	NaN	NaN	0.84651	1	4914	4914		1.6704	0	1	11029	+		13795	10290	7976	8140	10910	10910					0.005778788713655558
LGPGPGPP	8	Unmodified	_LGPGPGPP_					0	0	0			REV__ENSG00000113722|ENST00000231656|CDX1	REV__ENSG00000113722|ENST00000231656|CDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	346.19231408934996	2	346.192314	690.370075	1.5954	0.00055233	-3.3909	-0.0011739	-1.7954	-0.00062157	346.19102642517	27.664	0.16891	27.664	27.615	27.784	0	1461	40	0.7376554	0.024125457	0.7376554	301.34674	0	9.855713						127	8	2	NaN	NaN	NaN	0.84651	1	3047	3047		1.6704	0	1	16821	+		13796	9159	7977	8141	10911	10911					0.012505010887025492
LGPGPGPP	8	Unmodified						0	0	0			REV__ENSG00000113722|ENST00000231656|CDX1	REV__ENSG00000113722|ENST00000231656|CDX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	346.192314	690.370075	1.5954	0.00055233	-3.3909	-0.0011739	-1.7954	-0.00062157	346.19102642517	27.664	0.16891	27.664	27.615	27.784	0	1461	40	0.7376554	0.024125457	0.7376554	301.34674		9.855713	-0.031012	0.00036985	-0.00016818	NaN	1.6704	127	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16821	+		13797	9159	7977	8141							0.012505010887025492
LGPKPPWN	8	Unmodified	_LGPKPPWN_					0	0	0		ENST00000587994.5_1_18:47317962-47318610:-|nuORF	ENST00000587994.5_1_18:47317962-47318610:-|nuORF	ENST00000587994.5_1_18:47317962-47318610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.75307014895	2	454.75307	907.491587	0.84241	0.00038309	-0.14918	-6.784E-05	0.69323	0.00031525	454.75347652867214	21.079	0.19263	21.065	20.993	21.186	-0.014004	1548	76	0.6837494	0.046511114	0.68222994	278.02554	0	18.912292						202	9	2	NaN	NaN	NaN	0.74229	1	6076	6076		16.417	1.2413	1	19041			13798	7709	7978	8142	10912	10912					0.03414123451227624
LGPRTHVQAGP	11	Unmodified	_LGPRTHVQAGP_					0	0	0		ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.81472166555	2	566.814722	1131.61489	1.4515	0.00082275	-8.3316	-0.0047225	-6.8801	-0.0038997	566.8082876352253	21.416	0.14428	21.402	21.306	21.45	-0.014004	1191	37	0.90387505	0.02205491	0.9023556	366.44565	0	8.941406						94	7	3	NaN	NaN	NaN	0.6875	1	13707	13707		8.2775	0.032722	1	7817.5			13799	6092	7979	8143	10913	10913					0.054347548316854954
LGPRTHVQAGP	11	Unmodified						0	0	0		ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	ENSG00000244482|ENST00000396365|LILRA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.814722	1131.61489	1.6267	0.00092206	-11.797	-0.0066869	-10.171	-0.0057648	566.8076812998709	21.296	0.07222	21.296	21.248	21.32	0	1200	34	0.89836043	0.020222485	0.89836043	364.20993		8.198517	-0.053176	-0.0019465	-0.0019976	NaN	8.2775	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9212.4			13800	6092	7979	8143							0.054347548316854954
LGPWAGVPLL	10	Unmodified	_LGPWAGVPLL_					0	0	0			REV__ENSG00000184471|ENST00000328449|C1QTNF8	REV__ENSG00000184471|ENST00000328449|C1QTNF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.80530268470005	2	511.805303	1021.59605	1.7917	0.00091702	-5.6397	-0.0028864	-3.8479	-0.0019694	511.8024559842023	20.477	0.16833	20.477	20.429	20.597	0	1305	79	0.83389086	0.047966838	0.83389086	338.51077	0	19.47171						335	8	4	NaN	NaN	NaN	0.6337	1	9447	9447		12.588	1.0394	1	82290	+		13801	10927	7980	8144	10914	10914					0.08611825207947277
LGQAKMGF	8	Unmodified	_LGQAKMGF_					0	0	0		ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENSG00000112972|ENST00000325110|HMGCS1	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4443854198001	1	851.444385	850.437109	1.8318	0.0015597	-3.4737	-0.0029577	-1.6419	-0.001398	851.4411063063008	53.803	0.21685	53.803	53.731	53.948	0	378	49	1.3947657	0.028564572	1.3947657	283.8579	0	5.8133545						182	10	2	NaN	NaN	NaN	0.8439	1	5392	5392		3.1533	0	1	22143			13802	1895	7981	8145	10915	10915					0.005907883081590626
LGQAKMGF	8	Unmodified						0	0	0		ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENSG00000112972|ENST00000325110|HMGCS1	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.444385	850.437109	-0.60198	-0.00051255	-2.8636	-0.0024382	-3.4655	-0.0029507	851.4426878560051	53.778	0.23327	53.777	53.712	53.945	-0.00059128	375	49	1.3965509	0.028558373	1.3950315	284.22122		5.8121033	-0.013225	0.00037992	0.00013287	NaN	3.1533	155	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13098			13803	1895	7981	8145							0.005907883081590626
LGQYPQEAL	9	Unmodified	_LGQYPQEAL_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R;REV__nc|ENSG00000171105|P06213-2|INSR;REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5203871344	1	1018.52039	1017.51311	1.9993	0.0020363	-1.224	-0.0012466	0.77529	0.00078965	1018.5188638631987	21.296	0.072165	21.282	21.258	21.33	-0.014006	201	46	1.4997677	0.026616096	1.4982482	304.42908	0	5.402649						75	4	2	NaN	NaN	NaN	0.27608	1	9090	9090		20.449	0	1	6401.1	+		13804	9796;10612;8439	7982	8146	10916	10916					0.0050546368928507945
LGQYPQEAL	9	Unmodified						0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R;REV__nc|ENSG00000171105|P06213-2|INSR;REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1018.52039	1017.51311	1.9993	0.0020363	-1.224	-0.0012466	0.77529	0.00078965	1018.5188638631987	21.296	0.072165	21.282	21.258	21.33	-0.014006	201	46	1.4997677	0.026616096	1.4982482	304.42908		5.402649	-0.006921	0.00046567	-0.00075972	NaN	20.449	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6401.1	+		13805	9796;10612;8439	7982	8146							0.0050546368928507945
LGRNVMSTA	9	Unmodified	_LGRNVMSTA_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant;ENST00000556004.1_1_14:31596982-31597923:-|nuORF	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4931265264001	1	948.493127	947.48585	1.6455	0.0015607	8.2111	0.0077881	9.8566	0.0093489	948.5026882479547	24.044	0.14474	24.044	23.995	24.14	0	306	97	1.4375578	0.05696535	1.4375578	292.08963	0	11.574463						362	7	4	NaN	NaN	NaN	0.25448	1	7018	7018		21.835	5.4184	1	45645			13806	1089	7983	8147	10917	10917					0.01000656877261008
LGRPTWWCRRD	11	Unmodified	_LGRPTWWCRRD_					0	0	0		ENST00000251642.7_1_17:40264192-40264675:-|nuORF	ENST00000251642.7_1_17:40264192-40264675:-|nuORF	ENST00000251642.7_1_17:40264192-40264675:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.36458707535	2	723.364587	1444.71462	0.15183	0.00010983	-0.72456	-0.00052412	-0.57273	-0.00041429	723.3635762370959	44.542	0.14415	44.553	44.481	44.626	0.011646	1107	52	0.9552588	0.03115189	0.9537394	386.2655	0	12.596466						138	7	2	NaN	NaN	NaN	0.75376	1	19385	19385		3.9281	0.7165	1	17589			13807	6276	7984	8148	10918	10918					0.01005249173977063
LGRRECEA	8	Unmodified	_LGRRECEA_					0	0	0			REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.23217591885	2	467.232176	932.449799	0.50652	0.00023666	-0.63898	-0.00029855	-0.13246	-6.1887E-05	467.232166355317	28.652	0.048239	28.644	28.596	28.644	-0.0083485	1314	64	0.8283535	0.038790643	0.8268341	336.6899	0	15.766724						78	3	2	NaN	NaN	NaN	0.82797	1	6515	6515		5.4659	0	1	6341	+		13808	10645	7985	8149	10919	10919					-0.01912800299612627
LGRTKCELKIL	11	Unmodified	_LGRTKCELKIL_					0	0	0			REV__HMCN1|p.E1570K|1|0.05|ENSG00000143341|chr1:186015236-186015236|G/A|missense_variant	REV__HMCN1|p.E1570K|1|0.05|ENSG00000143341|chr1:186015236-186015236|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.38666518815	2	637.386665	1272.75878	1.3767	0.00087751	-5.3888	-0.0034347	-4.0121	-0.0025572	637.3832677934862	40.126	0.14434	40.132	40.036	40.18	0.0060463	1197	43	0.9001988	0.025736272	0.8986794	364.46768	0	10.419983						215	7	3	NaN	NaN	NaN	0.71564	1	17469	17469		6.4299	1.2411	1	26132	+		13809	13018	7986	8150	10920	10920					0.13330840547610023
LGRTKCELKIL	11	Unmodified						0	0	0			REV__HMCN1|p.E1570K|1|0.05|ENSG00000143341|chr1:186015236-186015236|G/A|missense_variant	REV__HMCN1|p.E1570K|1|0.05|ENSG00000143341|chr1:186015236-186015236|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.386665	1272.75878	1.3767	0.00087751	-5.3888	-0.0034347	-4.0121	-0.0025572	637.3832677934862	40.126	0.14434	40.132	40.036	40.18	0.0060463	1197	43	0.9001988	0.025736272	0.8986794	364.46768		10.419983	-0.16623	-0.00065302	0.0010788	NaN	6.4299	215	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26132	+		13810	13018	7986	8150							0.13330840547610023
LGSAAGGH	8	Unmodified	_LGSAAGGH_					0	0	0			REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.16937030929995	2	335.16937	668.324188	1.3255	0.00044425	-8.1775	-0.0027409	-6.8521	-0.0022966	335.16645347880666	43.321	0.071888	43.321	43.297	43.369	0	1533	40	0.6930556	0.024191022	0.6930556	283.30786	0	9.888824						78	4	2	NaN	NaN	NaN	0.84876	1	2551	2551		0.39566	0	1	8502.3	+		13811	10910	7987	8151	10921	10921					-0.023241440935294122
LGSAAGGH	8	Unmodified						0	0	0			REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.16937	668.324188	1.3255	0.00044425	-8.1775	-0.0027409	-6.8521	-0.0022966	335.16645347880666	43.321	0.071888	43.321	43.297	43.369	0	1533	40	0.6930556	0.024191022	0.6930556	283.30786		9.888824	-0.10044	0.00048339	0.0016901	NaN	0.39566	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8502.3	+		13812	10910	7987	8151							-0.023241440935294122
LGSAAGGH	8	Unmodified						0	0	0			REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	REV__ENST00000360864.8_1_20:62563213-62563258:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	335.16937	668.324188	1.1611	0.00038915	-9.8253	-0.0032932	-8.6643	-0.002904	335.1665668235141	43.511	0.072014	43.522	43.45	43.522	0.01099	1536	40	0.69119483	0.024191022	0.6896754	282.54718		9.888824	0.10044	-0.0006212	-0.0016901	NaN	0.39566	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4852.4	+		13813	10910	7987	8151							-0.023241440935294122
LGSAEGQFLL	10	Unmodified	_LGSAEGQFLL_					0	0	0			REV__ENST00000441796.1_1_9:131870207-131870756:-|nuORF	REV__ENST00000441796.1_1_9:131870207-131870756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7794818647001	2	517.779482	1033.54441	1.3877	0.0007185	-0.60374	-0.0003126	0.78393	0.0004059	517.7787413739926	20.164	0.14445	20.15	20.126	20.271	-0.014143	1236	40	0.876284	0.023932874	0.8747646	355.6652	0	9.713837						169	7	4	NaN	NaN	NaN	0.16973	1	9726	9726		38.131	2.8343	1	29325	+		13814	12194	7988	8152	10922	10922					0.028980367233771176
LGSGLVTL	8	Unmodified	_LGSGLVTL_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.4610813415001	1	759.461081	758.453805	2.0132	0.0015289	-0.64805	-0.00049217	1.3651	0.0010367	759.4618624257098	26.746	0.048273	26.735	26.711	26.759	-0.010645	582	37	1.2729256	0.021579266	1.2714062	259.56067	0	4.4002075						48	3	2	NaN	NaN	NaN	0.14214	1	4120	4120		55.947	5.9148	1	3444.5			13815	3727	7989	8153	10923	10923					0.06491612465754315
LGSGLVTL	8	Unmodified						0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	759.461081	758.453805	1.5827	0.001202	0.040755	3.0952E-05	1.6235	0.0012329	759.4607577936398	26.746	0.048326	26.746	26.722	26.77	0	582	37	1.2729256	0.021579266	1.2729256	259.56067		4.4002075	0.0055074	0.00018475	0.00075972	NaN	55.947	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4114.6			13816	3727	7989	8153							0.06491612465754315
LGSGVISVVL	10	Unmodified	_LGSGVISVVL_					0	0	0			REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.29476778815007	2	472.294768	942.574983	1.0558	0.00049865	-0.84945	-0.00040119	0.20635	9.7458E-05	472.29434562635026	20.911	0.096294	20.911	20.887	20.983	0	1344	70	0.8098828	0.042512596	0.8098828	329.13098	0	17.276855						153	5	3	NaN	NaN	NaN	0.56921	1	6892	6892		16.584	1.5713	1	21213	+		13817	12754	7990	8154	10924	10924					0.10139815108436778
LGSGVISVVL	10	Unmodified						0	0	0			REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	472.294768	942.574983	1.0558	0.00049865	-0.84945	-0.00040119	0.20635	9.7458E-05	472.29434562635026	20.911	0.096294	20.911	20.887	20.983	0	1344	70	0.8098828	0.042512596	0.8098828	329.13098		17.276855	-0.017104	-0.00018701	-0.00016427	NaN	16.584	153	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21213	+		13818	12754	7990	8154							0.10139815108436778
LGSGVISVVL	10	Unmodified						0	0	0			REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	REV__ENST00000554739.5_1_14:64855058-64855755:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	472.294768	942.574983	-0.055441	-2.6184E-05	-0.33559	-0.0001585	-0.39103	-0.00018468	472.2944256533863	20.959	0.072197	20.945	20.897	20.969	-0.014088	1341	67	0.8117308	0.04066646	0.81021136	329.882		16.52658	0.017104	0.00029837	0.00016427	NaN	16.584	155	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19900	+		13819	12754	7990	8154							0.10139815108436778
LGSIYRILGW	10	Unmodified	_LGSIYRILGW_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.34004095905	2	589.340041	1176.66553	1.2861	0.00075797	2.8477	0.0016782	4.1338	0.0024362	589.3415138629186	31.742	0.21724	31.742	31.646	31.863	0	1101	130	0.95892316	0.07871109	0.95892316	388.58377	0	31.896088						784	10	5	NaN	NaN	NaN	0.77884	1	15723	15723		0.79988	0	1	170480	+		13820	8471	7991	8155	10925	10925					0.0842628415668969
LGSIYRILGW	10	Unmodified						0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.340041	1176.66553	1.2861	0.00075797	2.8477	0.0016782	4.1338	0.0024362	589.3415138629186	31.742	0.21724	31.742	31.646	31.863	0	1101	130	0.95892316	0.07871109	0.95892316	388.58377		31.896088	0.0027523	-0.00033435	-0.00015622	NaN	0.79988	784	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170480	+		13821	8471	7991	8155							0.0842628415668969
LGSIYRILGW	10	Unmodified						0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.340041	1176.66553	0.66597	0.00039248	3.2812	0.0019337	3.9472	0.0023262	589.3418503913227	31.741	0.21725	31.737	31.616	31.833	-0.0044155	1098	133	0.960755	0.080519915	0.9592356	389.3261		32.62906	-0.0027523	0.00017662	0.00015622	NaN	0.79988	685	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170600	+		13822	8471	7991	8155							0.0842628415668969
LGSPGQLP	8	Unmodified	_LGSPGQLP_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.71615332639993	2	384.716153	767.417754	1.3937	0.00053619	0.6349	0.00024426	2.0286	0.00078045	384.71641608093233	24.261	0.072357	24.261	24.237	24.309	0	1365	139	0.7969414	0.0851959	0.7969414	324.9317	0	34.73639						247	4	4	NaN	NaN	NaN	0.55996	1	4326	4326		27.789	8.6705	1	121760			13823	7408	7992	8156	10926	10926					0.024741552888940532
LGSWNELTV	9	Unmodified	_LGSWNELTV_					0	0	0			REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF	REV__ENST00000304191.3_1_15:83654967-83655093:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5203871343999	1	1018.52039	1017.51311	1.4471	0.0014739	-1.1523	-0.0011736	0.29478	0.00030024	1018.5207816666842	30.39	0.14479	30.383	30.335	30.48	-0.0064106	162	97	1.5228153	0.056729794	1.5212959	309.1074	0	11.515259						318	7	3	NaN	NaN	NaN	0.27608	1	9089	9089		20.449	1.2851	1	47749	+		13824	11669	7993	8157	10927	10927					0.005054636892737108
LGTAPVEPLL	10	Unmodified	_LGTAPVEPLL_					0	0	0			REV__ENST00000295802.8_1_2:85570809-85570872:-|nuORF	REV__ENST00000295802.8_1_2:85570809-85570872:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5928237960001	1	1009.59282	1008.58555	1.5	0.0015143	-0.98226	-0.00099168	0.5177	0.00052266	1009.5917024001863	30.824	0.24133	30.818	30.722	30.963	-0.0057564	159	76	1.5245869	0.044294357	1.5230675	309.50363	0	8.992126						445	11	3	NaN	NaN	NaN	0.2358	1	8761	8761		32.453	3.5572	1	94841	+		13825	11632	7994	8158	10928	10928					0.0815979776284621
LGTAVELEM	9	Unmodified	_LGTAVELEM_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.486309814	1	962.48631	961.479033	2.064	0.0019866	-3.2218	-0.0031009	-1.1578	-0.0011144	962.4830690220407	26.094	0.16899	26.083	25.987	26.156	-0.011137	264	76	1.4624695	0.04447341	1.46095	297.08936	0	9.034393						201	8	3	NaN	NaN	NaN	0.10956	1	7220	7220		34.439	12.604	1	17597			13826	3165	7995	8159	10929	10929					-0.003247007939762625
LGTAVELEM	9	Unmodified						0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	962.48631	961.479033	1.9643	0.0018907	-1.8768	-0.0018064	0.08751	8.4227E-05	962.4840038770978	26.094	0.14483	26.094	26.022	26.167	0	264	88	1.4624695	0.051594615	1.4624695	297.08936		10.481049	0.0056668	0.00061959	0.00075972	NaN	34.439	206	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19827			13827	3165	7995	8159							-0.003247007939762625
LGTFTSLLL	9	Unmodified	_LGTFTSLLL_					0	0	0		ENST00000574768.5_1_16:2905847-2908105:-|nuORF;ENSG00000005001|ENST00000161006|PRSS22	ENST00000574768.5_1_16:2905847-2908105:-|nuORF	ENST00000574768.5_1_16:2905847-2908105:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5713600724004	1	964.57136	963.564084	0.90968	0.00087745	-0.70393	-0.000679	0.20574	0.00019845	964.5694813933629	33.528	0.048244	33.528	33.504	33.552	0	183	52	1.510409	0.030148864	1.510409	306.8185	0	6.1243286						74	3	3	NaN	NaN	NaN	0.47587	1	7450	7450		10.605	0	1	4877			13828	316	7996	8160	10930	10930					0.08084412734160651
LGTFTSLLL	9	Unmodified						0	0	0		ENST00000574768.5_1_16:2905847-2908105:-|nuORF;ENSG00000005001|ENST00000161006|PRSS22	ENST00000574768.5_1_16:2905847-2908105:-|nuORF	ENST00000574768.5_1_16:2905847-2908105:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	964.57136	963.564084	1.5182	0.0014644	-0.94189	-0.00090852	0.57627	0.00055586	964.572526628733	33.527	0.048275	33.525	33.525	33.573	-0.0018501	186	37	1.5086359	0.021278262	1.5071164	306.45834		4.322357	-0.0016087	-0.00015036	-0.0016463	NaN	10.605	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2616.9			13829	316	7996	8160							0.08084412734160651
LGTFVGLPVL	10	Unmodified	_LGTFVGLPVL_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.3129605413	2	508.312961	1014.61137	1.5492	0.00078748	-0.077262	-3.9273E-05	1.4719	0.0007482	508.31280642669174	25.322	0.16883	25.31	25.214	25.382	-0.012011	1269	46	0.8560222	0.027647734	0.85450274	347.52655	0	11.224365						180	8	3	NaN	NaN	NaN	0.53991	1	8996	8996		17.799	1.2148	1	19215	+		13830	10699	7997	8161	10931	10931					0.10464692005132292
LGTHGGGP	8	Unmodified	_LGTHGGGP_					0	0	0			REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.3471142162001	1	695.347114	694.339838	1.321	0.00091852	-4.5139	-0.0031387	-3.1929	-0.0022202	695.3435362759197	28.75	0.1931	28.75	28.677	28.87	0	588	130	1.2693287	0.077429175	1.2693287	259.25137	0	15.814362						262	9	2	NaN	NaN	NaN	0.8439	1	3126	3126		3.1533	0	1	24115	+		13831	12000	7998	8162	10932	10932					-0.01955857576467679
LGTHGGGP	8	Unmodified						0	0	0			REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	695.347114	694.339838	1.321	0.00091852	-4.5139	-0.0031387	-3.1929	-0.0022202	695.3435362759197	28.75	0.1931	28.75	28.677	28.87	0	588	130	1.2693287	0.077429175	1.2693287	259.25137		15.814362	0.0045585	0.00067343	-0.00013956	NaN	3.1533	262	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24115	+		13832	12000	7998	8162							-0.01955857576467679
LGTIHIKV	8	Unmodified	_LGTIHIKV_					0	0	0			REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.5614640881003	1	880.561464	879.554188	1.2109	0.0010663	6.9328	0.0061048	8.1437	0.007171	880.5674226387733	41.089	0.40876	41.089	40.993	41.401	0	378	79	1.3947657	0.046437025	1.3947657	283.70834	0	9.44574						574	18	2	NaN	NaN	NaN	0.84887	1	5798	5798		0.32989	0	1	74508	+		13833	8190	7999	8163	10933	10933					0.10959269519435111
LGTIHIKV	8	Unmodified						0	0	0			REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.561464	879.554188	1.2109	0.0010663	6.9328	0.0061048	8.1437	0.007171	880.5674226387733	41.089	0.40876	41.089	40.993	41.401	0	378	79	1.3947657	0.046437025	1.3947657	283.70834		9.44574	0.0091881	3.5939E-05	0.00075972	NaN	0.32989	574	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74508	+		13834	8190	7999	8163							0.10959269519435111
LGTIHIKV	8	Unmodified						0	0	0			REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	REV__CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	880.561464	879.554188	0.89688	0.00078976	6.8295	0.0060138	7.7264	0.0068035	880.5673718773245	41.063	0.19239	41.07	40.974	41.167	0.0074959	378	73	1.3947657	0.04285586	1.3932463	283.70834		8.717285	-0.0091881	-5.5045E-05	-0.00075972	NaN	0.32989	250	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38482	+		13835	8190	7999	8163							0.10959269519435111
LGVAFRGL	8	Unmodified	_LGVAFRGL_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4;ENSG00000174013|ENST00000311630|FBXO45	ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.5039492092002	1	832.503949	831.496673	2.1653	0.0018026	0.70159	0.00058407	2.8669	0.0023867	832.5045025154855	56.037	0.16799	56.037	55.989	56.157	0	441	163	1.3572328	0.09677589	1.3572328	276.3194	0	19.702606						376	8	4	NaN	NaN	NaN	0.84651	1	5160	5160		1.6704	0	1	158380			13836	4977	8000	8164	10934	10934					0.07418427313859866
LGVAISTR	8	Unmodified	_LGVAISTR_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.4937784534	1	816.493778	815.486502	2.1235	0.0017338	2.0857	0.0017029	4.2091	0.0034367	816.4948302497239	29.208	0.024143	29.208	29.184	29.208	0	447	43	1.3536539	0.025060654	1.3536539	275.6787	0	5.1036987						39	2	2	NaN	NaN	NaN	0.78264	1	4965	4965		11.548	1.4969	1	2157.5			13837	8041	8001	8165	10935	10935					0.07137819588604088
LGVHKTYLA	9	Unmodified	_LGVHKTYLA_					0	0	0		ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2925594502	2	501.292559	1000.57057	1.0313	0.00051699	-3.5417	-0.0017754	-2.5103	-0.0012584	501.2907514308536	29.424	0.096516	29.417	29.32	29.417	-0.0077209	1233	91	0.87812483	0.0552029	0.8766054	356.5667	0	22.415375						326	5	4	NaN	NaN	NaN	0.68136	1	8461	8461		0.79988	0.40421	1	69948			13838	6816	8002	8166	10936	10936					0.07030350685511166
LGVVPLPK	8	Unmodified	_LGVVPLPK_					0	0	0			REV__nc|ENSG00000104866|O75864-2|PPP1R37	REV__nc|ENSG00000104866|O75864-2|PPP1R37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	822.5447513914	1	822.544751	821.537475	-0.075179	-6.1838E-05	-1.9901	-0.0016369	-2.0653	-0.0016988	822.5430547305077	55.146	0.16834	55.145	55.121	55.29	-0.00061798	402	205	1.3804773	0.121788144	1.3789579	281.10718	0	24.799774						389	8	4	NaN	NaN	NaN	0.84651	1	4929	4929		1.6704	0	1	150270	+		13839	13100	8003	8167	10937	10937					0.1195676863345625
LGVVPLPK	8	Unmodified						0	0	0			REV__nc|ENSG00000104866|O75864-2|PPP1R37	REV__nc|ENSG00000104866|O75864-2|PPP1R37	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.544751	821.537475	-0.075179	-6.1838E-05	-1.9901	-0.0016369	-2.0653	-0.0016988	822.5430547305077	55.146	0.16834	55.145	55.121	55.29	-0.00061798	402	205	1.3804773	0.121788144	1.3789579	281.10718		24.799774	-0.001343	0.00086016	0.00013373	NaN	1.6704	389	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150270	+		13840	13100	8003	8167							0.1195676863345625
LHADSGLLNF	10	Unmodified	_LHADSGLLNF_					0	0	0			REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7825558699001	2	543.782556	1085.55056	0.76359	0.00041523	0.34912	0.00018984	1.1127	0.00060507	543.7827649225874	33.552	0.14468	33.552	33.528	33.673	0	1233	49	0.87812483	0.029447913	0.87812483	356.1878	0	11.944763						189	7	3	NaN	NaN	NaN	0.37681	1	12201	12201		24.562	0	1	28560	+		13841	10456	8004	8168	10938	10938					0.01120554954900399
LHADSGLLNF	10	Unmodified	_LHADSGLLNF_					0	0	0			REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7825558699001	2	543.782556	1085.55056	0.58002	0.00031541	1.417	0.00077056	1.9971	0.001086	543.7829286431744	33.575	0.12068	33.573	33.525	33.645	-0.0018463	1230	52	0.8799654	0.031286716	0.878446	356.9344	0	12.690613						174	6	3	NaN	NaN	NaN	0.47601	1	11891	11891		20.449	3.8645	1	26512	+		13842	10456	8004	8168	10939	10939					0.01120554954900399
LHADSGLLNF	10	Unmodified						0	0	0			REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.782556	1085.55056	0.76359	0.00041523	0.34912	0.00018984	1.1127	0.00060507	543.7827649225874	33.552	0.14468	33.552	33.528	33.673	0	1233	49	0.87812483	0.029447913	0.87812483	356.1878		11.944763	-0.010474	-0.00063668	-0.00016058	NaN	24.562	189	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28560	+		13843	10456	8004	8168							0.01120554954900399
LHADSGLLNF	10	Unmodified						0	0	0			REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	REV__MBD6|p.P671Lfs*4|1|0.36|ENSG00000166987|chr12:57527151-57527151|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.782556	1085.55056	0.58002	0.00031541	1.417	0.00077056	1.9971	0.001086	543.7829286431744	33.575	0.12068	33.573	33.525	33.645	-0.0018463	1230	52	0.8799654	0.031286716	0.878446	356.9344		12.690613	0.010474	0.00052474	0.00016058	NaN	24.562	174	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26512	+		13844	10456	8004	8168							0.01120554954900399
LHAEAKEM	8	Unmodified	_LHAEAKEM_					0	0	0			REV__ENST00000509132.1_1_18:3977886-3978309:-|nuORF	REV__ENST00000509132.1_1_18:3977886-3978309:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.7314774271	2	464.731477	927.448402	0.80756	0.0003753	0.1426	6.6269E-05	0.95015	0.00044157	464.7315709654361	19.394	0.16829	19.38	19.332	19.5	-0.014141	1356	43	0.8024889	0.025887072	0.8009695	326.20258	0	10.522797						118	8	2	NaN	NaN	NaN	0.6053	1	6408	6408		24.961	1.6266	1	12453	+		13845	12548	8005	8169	10940	10940					-0.01822434388361671
LHAFPPCEFS	10	Unmodified	_LHAFPPCEFS_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2656843852001	2	574.265684	1146.51682	2.211	0.0012697	1.7897	0.0010278	4.0007	0.0022975	574.2666554494808	25.998	0.19308	25.998	25.926	26.119	0	1209	76	0.892844	0.045980036	0.892844	361.9168	0	18.638123						337	9	4	NaN	NaN	NaN	0.53991	1	14674	14674		17.799	2.3363	1	79578			13846	4178	8006	8170	10941	10941					-0.05058189808505631
LHAFRAEVD	9	Unmodified	_LHAFRAEVD_					0	0	0			REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2	REV__nc|ENSG00000025770|Q6IBW4-5|NCAPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2748980133001	2	529.274898	1056.53524	0.62437	0.00033046	-3.5289	-0.0018678	-2.9046	-0.0015373	529.2728101805308	32.175	0.12059	32.172	32.099	32.22	-0.0037613	1299	40	0.8375814	0.02398467	0.83606195	339.85938	0	9.732086						84	6	2	NaN	NaN	NaN	0.67818	1	10714	10714		1.072	0.14616	1	7656.9	+		13847	8436	8007	8171	10942	10942					0.009236881577180611
LHALKNIQ	8	Unmodified	_LHALKNIQ_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|5|1|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|5|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5625267206	1	936.562527	935.55525	0.49529	0.00046387	5.7261	0.0053629	6.2214	0.0058268	936.5698541734246	58.219	0.071892	58.218	58.218	58.29	-0.00048065	273	43	1.4571344	0.024901152	1.4556149	296.12137	0	5.0604553						48	4	2	NaN	NaN	NaN	0.8439	1	6604	6604		3.1533	1.483	1	4103	+		13848	13063	8008	8172	10943	10943					0.08489483888308769
LHALKNIQ	8	Unmodified						0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|5|1|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|5|1|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.562527	935.55525	0.49529	0.00046387	5.7261	0.0053629	6.2214	0.0058268	936.5698541734246	58.219	0.071892	58.218	58.218	58.29	-0.00048065	273	43	1.4571344	0.024901152	1.4556149	296.12137		5.0604553	-0.061417	0.00037738	-0.0025382	NaN	3.1533	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4103	+		13849	13063	8008	8172							0.08489483888308769
LHCLLGRA	8	Unmodified	_LHCLLGRA_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.75254722020003	2	441.752547	881.490542	1.452	0.00064144	-5.5719	-0.0024614	-4.1199	-0.00182	441.75029755143254	12.03	0.095912	12.022	11.926	12.022	-0.0081863	1377	31	0.7895419	0.018502772	0.78802246	321.18393	0	7.526886						55	5	2	NaN	NaN	NaN	0.69631	1	5702	5702		19.285	9.2331	1	4267.9			13850	5530	8009	8173	10944	10944					0.04505585810682078
LHCPKCHLL	9	Unmodified	_LHCPKCHLL_					0	0	0		ENSG00000128513|ENST00000357628|POT1;nc|ENSG00000128513|Q9NUX5-2|POT1	ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	355.1895018591334	3	355.189502	1062.54668	1.7246	0.00061255	0.7102	0.00025225	2.4348	0.00086481	355.1897264411336	20.333	0.19269	20.319	20.271	20.463	-0.014141	1455	49	0.7413668	0.029688	0.73984736	451.19028	0	18.067902						211	9	3	NaN	NaN	NaN	0.42773	1	10984	10984		7.5876	1.1577	1	40944			13851	2570	8010	8174	10945	10945					0.017904706558510952
LHCQVEALSME	11	Carbamidomethyl (C)	_LHC(Carbamidomethyl (C))QVEALSME_	LHC(1)QVEALSME		LHC(56)QVEALSME		0	1	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.8023050339999	2	658.802305	1315.59006	1.6889	0.0011127	-10.194	-0.0067161	-8.5054	-0.0056034	658.7957602464984	24.309	0.24134	24.296	24.248	24.489	-0.012749	1119	115	0.9479278	0.06966001	0.94640833	383.65778	0	28.193726						758	11	4	NaN	NaN	NaN	0.031011	1	18197	18197		55.958	12.963	1	208880	+		13852	10016	8011	8175	10946	10946	5				-0.05511429148236857
LHCQVEALSME	11	Carbamidomethyl (C)						0	1	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	658.802305	1315.59006	1.6889	0.0011127	-10.194	-0.0067161	-8.5054	-0.0056034	658.7957602464984	24.309	0.24134	24.296	24.248	24.489	-0.012749	1119	115	0.9479278	0.06966001	0.94640833	383.65778		28.193726	0.0055563	0.00048425	-0.0016762	NaN	55.958	758	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208880	+		13853	10016	8011	8175			5				-0.05511429148236857
LHCSVVSEP	9	Unmodified	_LHCSVVSEP_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.73675977025005	2	485.73676	969.458967	1.9967	0.00096987	3.4072	0.001655	5.4039	0.0026249	485.73882307703497	24.357	0.048283	24.344	24.32	24.368	-0.012747	1284	34	0.8468043	0.020285964	0.8452849	343.99844	0	8.240784						46	3	2	NaN	NaN	NaN	0.53206	1	7433	7433		8.2903	2.2	1	4411.5			13854	1021	8012	8176	10947	10947					-0.026984517339201375
LHCVMDCLQM	10	Unmodified	_LHCVMDCLQM_					0	0	0			REV__ENST00000544484.5_1_12:6691814-6691874:-|nuORF	REV__ENST00000544484.5_1_12:6691814-6691874:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.75271503515	2	596.752715	1191.49088	0.56507	0.0003372	0.37611	0.00022444	0.94117	0.00056165	597.2544841387923	37.65	0.14444	37.65	37.602	37.747	0	1215	73	0.8891654	0.04414797	0.8891654	360.26395	0	17.887482						261	7	4	NaN	NaN	NaN	0.65442	1	16178	16178		11.17	0.81017	1	21871	+		13855	12709	8013	8177	10948	10948					-0.0972086663830396
LHDAASKLL	9	Unmodified	_LHDAASKLL_					0	0	0		chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11;ENSG00000138160|ENST00000260731|KIF11	chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.28219172915004	2	484.282192	966.549831	1.8441	0.00089306	-0.73321	-0.00035508	1.1109	0.00053798	484.2813973522049	19.372	0.071966	19.372	19.348	19.42	0	1320	37	0.824661	0.022160053	0.824661	335.01727	0	9.002502						67	4	2	NaN	NaN	NaN	0.58159	1	7527	7527		6.2502	0.15988	1	7206.7			13856	117	8014	8178	10949	10949					0.06521760305861335
LHDDNGDVI	9	Unmodified	_LHDDNGDVI_					0	0	0			REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.23289581285	2	499.232896	996.451239	1.3998	0.00069883	5.4052	0.0026985	6.8051	0.0033973	499.23570461690014	27.302	0.096531	27.302	27.277	27.374	0	1338	46	0.81357855	0.027713597	0.81357855	330.37585	0	11.253845						77	5	2	NaN	NaN	NaN	0.31737	1	8434	8434		17.799	4.7961	1	8420.3	+		13857	9277	8015	8179	10950	10950					-0.047128877298519
LHDDNGDVI	9	Unmodified						0	0	0			REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.232896	996.451239	1.3998	0.00069883	5.4052	0.0026985	6.8051	0.0033973	499.23570461690014	27.302	0.096531	27.302	27.277	27.374	0	1338	46	0.81357855	0.027713597	0.81357855	330.37585		11.253845	-0.0066305	-0.00055973	0.0016836	NaN	17.799	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8420.3	+		13858	9277	8015	8179							-0.047128877298519
LHDDNGDVI	9	Unmodified						0	0	0			REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	REV__PCDH17|p.E637Q|1|0.3|ENSG00000118946|chr13:57634455-57634455|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	499.232896	996.451239	1.0689	0.00053363	6.776	0.0033828	7.8449	0.0039164	499.23693895785624	27.325	0.07239	27.315	27.291	27.363	-0.010124	1341	49	0.8117308	0.029559612	0.81021136	329.62552		12.003479	0.0066305	0.00080895	-0.0016836	NaN	17.799	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7174.7	+		13859	9277	8015	8179							-0.047128877298519
LHDETEKLVR	10	Unmodified	_LHDETEKLVR_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.8945765232666	3	413.894577	1238.6619	2.4966	0.0010333	-4.2333	-0.0017521	-1.7367	-0.00071882	414.2263324533324	11.212	0.095812	11.212	11.164	11.26	0	1416	34	0.76547134	0.020382881	0.76547134	465.01306	0	12.382294						41	5	2	NaN	NaN	NaN	0.77292	1	17498	17498		2.239	0.54048	1	2723.5			13860	5745	8016	8180	10951	10951					0.05211569592165688
LHDSPIVVL	9	Unmodified	_LHDSPIVVL_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.79239227470003	2	496.792392	991.570232	1.66	0.00082468	-1.6983	-0.00084368	-0.038233	-1.8994E-05	496.7921330742105	25.684	0.19296	25.672	25.576	25.769	-0.0116	1290	61	0.84311575	0.036889493	0.8415963	342.39322	0	14.981018						290	9	4	NaN	NaN	NaN	0.39244	1	8125	8125		14.042	2.9509	1	43506	+		13861	10857	8017	8181	10952	10952					0.07410930965670559
LHECFDLGP	9	Unmodified	_LHECFDLGP_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant;nc|ENSG00000089101|Q8NHU2-3|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7367597702502	2	515.73676	1029.45897	0.70417	0.00036317	-9.3036	-0.0047982	-8.5995	-0.0044351	515.7326478222266	32.007	0.096506	32.003	31.979	32.075	-0.0037575	1329	37	0.81912065	0.02216494	0.8176012	332.48117	0	8.996735						112	5	3	NaN	NaN	NaN	0.56671	1	9543	9543		6.8632	1.3974	1	9010.1			13862	100	8018	8182	10953	10953					-0.054584517339208105
LHEDNHYRI	9	Unmodified	_LHEDNHYRI_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.79398622345	2	598.793986	1195.57342	1.8241	0.0010923	6.8393	0.0040953	8.6634	0.0051876	598.7972827233949	17.882	0.095984	17.868	17.844	17.94	-0.013786	1206	49	0.894683	0.029416084	0.89316356	362.48532	0	11.91806						60	5	2	NaN	NaN	NaN	0.64666	1	15687	15687		3.5698	0.35817	1	5650.2			13863	4246	8019	8183	10954	10954					-0.016544259276315643
LHEKVNII	8	Unmodified	_LHEKVNII_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.29255945020003	2	483.292559	964.570566	2.0336	0.00098283	-3.9117	-0.0018905	-1.8781	-0.00090766	483.2905188913741	24.405	0.096537	24.393	24.368	24.465	-0.012747	1326	37	0.8209676	0.022160053	0.81944823	333.52646	0	9.002747						57	5	2	NaN	NaN	NaN	0.81756	1	7321	7321		6.8632	0	1	6458.1			13864	2326	8020	8184	10955	10955					0.08686350685513844
LHEVSFEETG	10	Unmodified	_LHEVSFEETG_					0	0	0			REV__CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	REV__CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.18038255249996	3	383.180383	1146.51932	2.1243	0.000814	-2.7958	-0.0010713	-0.6715	-0.0002573	383.17960168101035	26.046	0.072424	26.035	26.011	26.083	-0.011135	1458	118	0.7395112	0.07227439	0.73799175	449.6397	0	43.94449						284	4	3	NaN	NaN	NaN	0.68669	1	14187	14187		4.6175	1.038	1	32396	+		13865	8173	8021	8185	10956	10956					-0.04808062869847163
LHFAPSSC	8	Unmodified	_LHFAPSSC_					0	0	0		ENST00000508244.5_3_5:37213668-37213716:-|nuORF	ENST00000508244.5_3_5:37213668-37213716:-|nuORF	ENST00000508244.5_3_5:37213668-37213716:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.19981315795	2	431.199813	860.385073	0.72947	0.00031455	7.7297	0.003333	8.4591	0.0036476	431.2034369216823	20.742	0.14443	20.728	20.704	20.849	-0.014088	1401	37	0.77473325	0.022222579	0.7732138	315.27823	0	9.043488						119	7	3	NaN	NaN	NaN	0.59262	1	5396	5396		25.752	0	1	13985			13866	7341	8022	8186	10957	10957					-0.05070375105594849
LHFGIGVR	8	Unmodified	_LHFGIGVR_					0	0	0			REV__nc|ENSG00000138675|P12034-2|FGF5	REV__nc|ENSG00000138675|P12034-2|FGF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5257472838002	1	898.525747	897.518471	2.02	0.001815	-1.7322	-0.0015564	0.28775	0.00025855	898.5242706238879	30.222	0.096533	30.222	30.173	30.27	0	330	31	1.4233059	0.017822504	1.4233059	289.42447	0	3.624115						58	5	2	NaN	NaN	NaN	0.84207	1	6027	6027		3.5732	0.41988	1	3002	+		13867	9739	8023	8187	10958	10958					0.06561232062426825
LHFGIGVR	8	Unmodified						0	0	0			REV__nc|ENSG00000138675|P12034-2|FGF5	REV__nc|ENSG00000138675|P12034-2|FGF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	898.525747	897.518471	2.02	0.001815	-1.7322	-0.0015564	0.28775	0.00025855	898.5242706238879	30.222	0.096533	30.222	30.173	30.27	0	330	31	1.4233059	0.017822504	1.4233059	289.42447		3.624115	0.01576	0.0017488	0.00075972	NaN	3.5732	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3002	+		13868	9739	8023	8187							0.06561232062426825
LHFGIGVR	8	Unmodified						0	0	0			REV__nc|ENSG00000138675|P12034-2|FGF5	REV__nc|ENSG00000138675|P12034-2|FGF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	898.525747	897.518471	2.8358	0.0025481	-5.9513	-0.0053474	-3.1155	-0.0027993	898.5206977721965	30.197	0.048281	30.19	30.166	30.214	-0.0064106	330	22	1.4233059	0.012475133	1.4217864	289.4245		2.5367432	-0.01576	-0.0020421	-0.00075972	NaN	3.5732	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1442.4	+		13869	9739	8023	8187							0.06561232062426825
LHFPKKNL	8	Unmodified	_LHFPKKNL_					0	0	0			REV__ENSG00000163686|ENST00000478253|ABHD6	REV__ENSG00000163686|ENST00000478253|ABHD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	332.8711550533667	3	332.871155	995.591636	1.4665	0.00048814	-1.0234	-0.00034067	0.44304	0.00014747	332.8709944595685	20.838	0.12049	20.838	20.766	20.887	0	1482	37	0.72465914	0.022285342	0.72465914	441.4007	0	13.574341						101	6	2	NaN	NaN	NaN	0.84804	1	8429	8429		0.79988	0.10873	1	8644.7	+		13870	10294	8024	8188	10959	10959					0.09366360785031702
LHFPVVRS	8	Unmodified	_LHFPVVRS_					0	0	0			REV__chr5:167820675-167875986|351|29.09|0.26|6.81|+|0|TENM2,TENM2|1	REV__chr5:167820675-167875986|351|29.09|0.26|6.81|+|0|TENM2,TENM2|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.7796192504501	2	477.779619	953.544686	1.0032	0.00047931	-6.0583	-0.0028945	-5.0551	-0.0024152	477.7771343367745	12.486	0.12014	12.477	12.429	12.549	-0.0088415	1314	67	0.8283535	0.040639997	0.8268341	336.58176	0	16.513123						184	6	2	NaN	NaN	NaN	0.79379	1	7030	7030		10.052	0.30557	1	18543	+		13871	8231	8025	8189	10960	10960					0.06605501233912037
LHGDGGEI	8	Unmodified	_LHGDGGEI_					0	0	0			REV__ENST00000474646.1_1_13:38139628-38143902:-|nuORF	REV__ENST00000474646.1_1_13:38139628-38143902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.19304237085004	2	399.193042	796.371532	2.1633	0.00086356	4.2881	0.0017118	6.4514	0.0025754	399.19516140571767	30.92	0.67569	30.915	30.747	31.422	-0.0050716	1398	148	0.77658504	0.0908556	0.7750656	316.43018	0	37.020355						1842	29	4	NaN	NaN	NaN	0.84207	1	4615	4615		3.5732	0	1	2286800	+	+	13872	8274	8026	8190	10961	10961					-0.034799096131791885
LHGFGGGG	8	Unmodified	_LHGFGGGG_					0	0	0		ENST00000529308.5_2_11:77925304-77925502:+|nuORF	ENST00000529308.5_2_11:77925304-77925502:+|nuORF	ENST00000529308.5_2_11:77925304-77925502:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3365495299003	1	701.33655	700.329273	1.203	0.00084368	-0.27221	-0.00019091	0.93075	0.00065277	701.3369237172334	54.908	0.14391	54.908	54.86	55.004	0	630	91	1.2441287	0.054063678	1.2441287	254.06241	0	11.040298						169	7	2	NaN	NaN	NaN	0.84876	1	3224	3224		0.39566	0	1	15662			13873	7444	8027	8191	10962	10962					-0.03287840230893835
LHGVLWLV	8	Unmodified	_LHGVLWLV_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5665494660002	1	936.566549	935.559273	1.6507	0.001546	0.84817	0.00079436	2.4988	0.0023403	936.5673588358849	58.341	0.072025	58.341	58.293	58.365	0	267	43	1.4606913	0.024895787	1.4606913	296.84424	0	5.059387						99	4	3	NaN	NaN	NaN	0.84651	1	6744	6744		1.6704	0.2308	1	7985.6			13874	2851	8028	8192	10963	10963					0.08891573382049955
LHHCSCFYVP	10	Unmodified	_LHHCSCFYVP_					0	0	0		ENST00000493918.5_1_3:9475714-9475846:+|nuORF	ENST00000493918.5_1_3:9475714-9475846:+|nuORF	ENST00000493918.5_1_3:9475714-9475846:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.5125331265	3	402.512533	1204.51577	1.5346	0.00061769	-4.0183	-0.0016174	-2.4837	-0.00099973	402.5106251467144	26.505	0.048262	26.505	26.481	26.529	0	1506	28	0.70979416	0.016729414	0.70979416	431.32446	0	10.166077						37	3	2	NaN	NaN	NaN	0.75966	1	16591	16591		1.6985	0	1	2951.1			13875	7280	8029	8193	10964	10964					-0.07830727449049846
LHIICTGT	8	Unmodified	_LHIICTGT_					0	0	0			REV__ENST00000591844.5_1_19:57062173-57062227:+|nuORF	REV__ENST00000591844.5_1_19:57062173-57062227:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4549501061002	1	857.45495	856.447674	1.4125	0.0012112	4.4283	0.003797	5.8408	0.0050082	857.459269802494	36.059	0.12056	36.06	35.988	36.108	0.0011024	498	43	1.3232021	0.025097966	1.3216827	269.26343	0	5.1073						91	6	2	NaN	NaN	NaN	0.84207	1	5355	5355		3.5732	0	1	5854.6	+		13876	12923	8030	8194	10965	10965					0.013707709626032738
LHILGGAP	8	Unmodified	_LHILGGAP_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.23451325505005	2	389.234513	776.454474	1.6532	0.00064348	-0.52703	-0.00020514	1.1262	0.00043834	389.2339574758256	22.79	0.072298	22.79	22.766	22.838	0	1473	46	0.7302302	0.027849138	0.7302302	297.6713	0	11.352417						76	4	2	NaN	NaN	NaN	0.84651	1	4451	4451		1.6704	0	1	5518.7	+		13877	10921	8031	8195	10966	10966					0.057304519054810044
LHILGGAP	8	Unmodified						0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	389.234513	776.454474	1.6532	0.00064348	-0.52703	-0.00020514	1.1262	0.00043834	389.2339574758256	22.79	0.072298	22.79	22.766	22.838	0	1473	46	0.7302302	0.027849138	0.7302302	297.6713		11.352417	-0.041082	0.00068376	0.0016881	NaN	1.6704	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5518.7	+		13878	10921	8031	8195							0.057304519054810044
LHILGGAP	8	Unmodified						0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	389.234513	776.454474	1.9031	0.00074075	-2.5925	-0.0010091	-0.68939	-0.00026833	389.2338079563292	22.886	0.07238	22.872	22.848	22.921	-0.01354	1476	49	0.72837335	0.02971381	0.7268539	296.9144		12.112549	0.041082	-0.00092413	-0.0016881	NaN	1.6704	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4568.9	+		13879	10921	8031	8195							0.057304519054810044
LHIMALLE	8	Unmodified	_LHIMALLE_					0	0	0		ENST00000497022.1_1_10:70930101-70931022:+|nuORF	ENST00000497022.1_1_10:70930101-70931022:+|nuORF	ENST00000497022.1_1_10:70930101-70931022:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.27023844685004	2	470.270238	938.525924	1.5153	0.00071259	-5.5964	-0.0026318	-4.0811	-0.0019192	470.2667686433009	28.17	0.048275	28.17	28.146	28.194	0	1341	58	0.8117308	0.035092473	0.8117308	329.90247	0	14.262268						68	3	2	NaN	NaN	NaN	0.81807	1	6793	6793		6.794	0.70367	1	4175.9			13880	7295	8032	8196	10967	10967					0.054202035478283506
LHIQFLEDYIQ	11	Unmodified	_LHIQFLEDYIQ_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.8693595045	2	709.86936	1417.72417	1.2831	0.00091086	0.52775	0.00037464	1.8109	0.0012855	709.8701865370134	30.246	0.096518	30.246	30.222	30.318	0	1038	40	0.997351	0.02376312	0.997351	403.35858	0	9.610474						127	5	3	NaN	NaN	NaN	0.74794	1	20206	20206		4.3102	0	1	11079	+		13881	10266	8033	8197	10968	10968					0.03201295940516502
LHKCIKTL	8	Unmodified	_LHKCIKTL_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5757339438002	1	955.575734	954.568457	1.8246	0.0017436	0.11246	0.00010747	1.9371	0.001851	955.5754669402259	54.572	0.048229	54.572	54.548	54.596	0	159	43	1.5245869	0.02480352	1.5245869	309.73972	0	5.0391846						46	3	2	NaN	NaN	NaN	0.84727	1	7206	7206		1.2418	0.16982	1	2962.5			13882	283	8034	8198	10969	10969					0.08935598676066547
LHKKTFELP	9	Unmodified	_LHKKTFELP_					0	0	0			REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	371.55360309440005	3	371.553603	1111.63898	1.8028	0.00066984	-1.7564	-0.00065262	0.046348	1.7221E-05	371.5520629452414	19.42	0.048042	19.42	19.396	19.444	0	1485	31	0.72280174	0.018575132	0.72280174	439.64352	0	11.298309						45	3	2	NaN	NaN	NaN	0.67818	1	13355	13355		0.44583	0	1	3199.8	+		13883	13640	8035	8199	10970	10970					0.08762595265397977
LHKKTFELP	9	Unmodified						0	0	0			REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	371.553603	1111.63898	1.8028	0.00066984	-1.7564	-0.00065262	0.046348	1.7221E-05	371.5520629452414	19.42	0.048042	19.42	19.396	19.444	0	1485	31	0.72280174	0.018575132	0.72280174	439.64352		11.298309	-0.076269	0.00088005	0.00075972	NaN	0.44583	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3199.8	+		13884	13640	8035	8199							0.08762595265397977
LHKKTFELP	9	Unmodified						0	0	0			REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	REV__TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	371.553603	1111.63898	3.1103	0.0011557	-3.4887	-0.0012962	-0.37839	-0.00014059	371.55162453319264	19.587	0.048164	19.573	19.524	19.573	-0.014141	1485	22	0.72280174	0.01300329	0.7212823	439.64352		7.9092407	0.076269	-0.0010508	-0.00075972	NaN	0.44583	32	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1742.5	+		13885	13640	8035	8199							0.08762595265397977
LHLDLAKK	8	Unmodified	_LHLDLAKK_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.29510213915	2	469.295102	936.575651	-1.4484	-0.00067973	2.3627	0.0011088	0.91426	0.00042906	469.2959255814013	56.059	0.072025	56.058	56.034	56.106	-0.00056458	1188	43	0.90571284	0.025727928	0.9041934	368.10956	0	10.4566345						122	4	4	NaN	NaN	NaN	0.84692	1	6618	6618		1.4396	0	1	30337	+		13886	8651	8036	8200	10971	10971					0.10482654548127357
LHLDLAKK	8	Unmodified						0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	469.295102	936.575651	1.2803	0.00060085	0.57232	0.00026858	1.8526	0.00086944	469.29555189254165	56.061	0.07206	56.061	56.037	56.109	0	1191	40	0.90387505	0.023894131	0.90387505	367.3626		9.711304	0.0013401	-0.00050455	-0.00015919	NaN	1.4396	92	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19754	+		13887	8651	8036	8200							0.10482654548127357
LHLDLAKK	8	Unmodified						0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	469.295102	936.575651	-1.4484	-0.00067973	2.3627	0.0011088	0.91426	0.00042906	469.2959255814013	56.059	0.072025	56.058	56.034	56.106	-0.00056458	1188	43	0.90571284	0.025727928	0.9041934	368.10956		10.4566345	-0.0013401	0.0011758	0.00015919	NaN	1.4396	122	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30337	+		13888	8651	8036	8200							0.10482654548127357
LHLESPQRQP	10	Unmodified	_LHLESPQRQP_					0	0	0		ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.2192830567667	3	402.219283	1203.63602	1.4653	0.00058938	2.9674	0.0011935	4.4327	0.0017829	402.22098207760416	22.887	0.072374	22.887	22.863	22.935	0	1464	40	0.73579943	0.02412808	0.73579943	447.13086	0	14.66214						74	4	2	NaN	NaN	NaN	0.65442	1	16586	16586		6.1406	2.2319	1	9201.3			13889	1752	8037	8201	10972	10972					0.04234720140561876
LHLHLIGF	8	Unmodified	_LHLHLIGF_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.5617984391002	1	949.561798	948.554522	1.3418	0.0012741	0.4831	0.00045873	1.8249	0.0017328	949.562979920116	41.498	0.096306	41.498	41.45	41.546	0	1080	31	0.9717421	0.018305898	0.9717421	197.43988	0	3.7194214						45	5	2	NaN	NaN	NaN	0.84876	1	7051	7051		0.39566	0	1	2544.5	+		13890	9327	8038	8202	10973	10973					0.07818689239286414
LHLHLIGF	8	Unmodified						0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	949.561798	948.554522	1.3418	0.0012741	0.4831	0.00045873	1.8249	0.0017328	949.562979920116	41.498	0.096306	41.498	41.45	41.546	0	1080	31	0.9717421	0.018305898	0.9717421	197.43988		3.7194214	-0.063464	-0.00016097	-0.0065595	NaN	0.39566	45	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544.5	+		13891	9327	8038	8202							0.07818689239286414
LHLPRLAP	8	Unmodified	_LHLPRLAP_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.5726974764	1	916.572697	915.565421	1.0992	0.0010075	-3.9612	-0.0036307	-2.862	-0.0026232	916.5685469952032	31.982	0.048273	31.979	31.954	32.003	-0.0037594	330	43	1.4233059	0.02495408	1.4217864	289.33832	0	5.072815						66	3	2	NaN	NaN	NaN	0.84876	1	6220	6220		0.39566	0	1	6091.3			13892	7663	8039	8203	10974	10974					0.10426091613544486
LHLPRLAP	8	Unmodified						0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	916.572697	915.565421	1.2333	0.0011304	-4.475	-0.0041016	-3.2417	-0.0029712	916.5692794312705	31.983	0.072422	31.983	31.959	32.032	0	333	46	1.4215236	0.026735067	1.4215236	288.976		5.4348755	0.0024234	-0.0001891	-0.00013145	NaN	0.39566	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7004.6			13893	7663	8039	8203							0.10426091613544486
LHLTVFWR	8	Unmodified	_LHLTVFWR_					0	0	0			REV__ENST00000534988.1_1_11:63996737-63997202:-|nuORF	REV__ENST00000534988.1_1_11:63996737-63997202:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.3085438654001	2	536.308544	1070.60253	2.0478	0.0010982	0.14714	7.8911E-05	2.1949	0.0011771	536.3087828323954	22.621	0.16889	22.621	22.573	22.742	0	1197	85	0.9001988	0.051489294	0.9001988	365.2054	0	20.888885						297	8	3	NaN	NaN	NaN	0.74229	1	11600	11600		16.417	0	1	40246	+		13894	12673	8040	8204	10975	10975					0.07005763159327216
LHMSSLSDYG	10	Unmodified	_LHMSSLSDYG_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2502312862501	2	555.250231	1108.48591	1.6836	0.00093481	-8.878	-0.0049295	-7.1944	-0.0039947	555.2454833336297	23.248	0.14477	23.234	23.21	23.355	-0.013294	1296	55	0.8394264	0.033196986	0.83790696	340.40256	0	13.461975						171	7	3	NaN	NaN	NaN	0.47601	1	12834	12834		20.449	5.2733	1	17775	+		13895	10117	8041	8205	10976	10976					-0.06399387913393184
LHNGPPLL	8	Unmodified	_LHNGPPLL_					0	0	0			REV__ENST00000283713.10_1_3:38035444-38037253:+|nuORF	REV__ENST00000283713.10_1_3:38035444-38037253:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.75307014895003	2	430.75307	859.491587	1.0382	0.00044719	-2.9513	-0.0012713	-1.9131	-0.00082409	430.7518096475657	20.814	0.096386	20.814	20.79	20.887	0	1413	43	0.7673241	0.025937617	0.7673241	312.26822	0	10.555511						112	5	3	NaN	NaN	NaN	0.82797	1	5527	5527		5.4659	0.55612	1	14110	+		13896	11610	8042	8206	10977	10977					0.05622123451234984
LHNSLFLNI	9	Unmodified	_LHNSLFLNI_					0	0	0			REV__ENST00000400590.7_2_13:21952859-21957074:-|nuORF	REV__ENST00000400590.7_2_13:21952859-21957074:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	357.5379530302	3	357.537953	1069.59203	2.6939	0.00096318	-3.8109	-0.0013625	-1.117	-0.00039936	357.53672609695525	18.218	0.11993	18.204	18.156	18.276	-0.01395	1476	31	0.72837335	0.018571138	0.7268539	443.2453	0	11.3013						78	6	2	NaN	NaN	NaN	0.59509	1	11269	11269		3.261	1.022	1	5717.5	+		13897	12037	8043	8207	10978	10978					0.06001735714221468
LHNSLFLNI	9	Unmodified						0	0	0			REV__ENST00000400590.7_2_13:21952859-21957074:-|nuORF	REV__ENST00000400590.7_2_13:21952859-21957074:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	357.537953	1069.59203	2.6939	0.00096318	-3.8109	-0.0013625	-1.117	-0.00039936	357.53672609695525	18.218	0.11993	18.204	18.156	18.276	-0.01395	1476	31	0.72837335	0.018571138	0.7268539	443.2453		11.3013	0.051554	-0.00062128	0.0010974	NaN	3.261	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5717.5	+		13898	12037	8043	8207							0.06001735714221468
LHNSLYRF	8	Unmodified	_LHNSLYRF_					0	0	0			REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2799833912001	2	525.279983	1048.54541	1.1414	0.00059956	-4.7074	-0.0024727	-3.566	-0.0018732	525.279018965719	20.911	0.072218	20.911	20.887	20.959	0	1290	64	0.84311575	0.038715184	0.84311575	342.13855	0	15.710724						128	4	2	NaN	NaN	NaN	0.72043	1	10573	10573		17.78	2.6049	1	13069	+		13899	12724	8044	8208	10979	10979					0.023082958829490963
LHNSLYRF	8	Unmodified						0	0	0			REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.279983	1048.54541	1.1414	0.00059956	-4.7074	-0.0024727	-3.566	-0.0018732	525.279018965719	20.911	0.072218	20.911	20.887	20.959	0	1290	64	0.84311575	0.038715184	0.84311575	342.13855		15.710724	0.0069701	0.00089042	-0.0010846	NaN	17.78	128	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13069	+		13900	12724	8044	8208							0.023082958829490963
LHNSLYRF	8	Unmodified						0	0	0			REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	REV__ENST00000547792.1_1_12:110781073-110782893:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.279983	1048.54541	0.83847	0.00044043	-6.4683	-0.0033977	-5.6298	-0.0029572	525.2782679582282	20.911	0.072268	20.897	20.873	20.945	-0.014086	1284	64	0.8468043	0.03870684	0.8452849	343.63538		15.707306	-0.0069701	-0.00095944	0.0010846	NaN	17.78	124	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13099	+		13901	12724	8044	8208							0.023082958829490963
LHPGLTAPD	9	Unmodified	_LHPGLTAPD_					0	0	0			REV__nc|ENSG00000105204|Q9Y463-2|DYRK1B	REV__nc|ENSG00000105204|Q9Y463-2|DYRK1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.7454420821	2	460.745442	919.476331	3.3919	0.0015628	-3.7546	-0.0017299	-0.36272	-0.00016712	460.7427978731895	17.882	0.024	17.868	17.868	17.892	-0.013786	1365	22	0.7969414	0.012942791	0.79542196	323.9886	0	5.26178						24	2	2	NaN	NaN	NaN	0.67989	1	6276	6276		0.92586	0.5302	1	1168.7	+		13902	8950	8045	8209	10980	10980					0.013372118633810715
LHPGNNGE	8	Unmodified	_LHPGNNGE_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.3849562855002	1	837.384956	836.37768	0.80931	0.0006777	1.7019	0.0014252	2.5113	0.0021029	837.3887849756995	39.093	0.12068	39.093	39.068	39.189	0	588	64	1.2693287	0.037781835	1.2693287	258.39847	0	7.6912994						141	6	3	NaN	NaN	NaN	0.84692	1	5216	5216		1.4396	0	1	14119	+		13903	10269	8046	8210	10981	10981					-0.04705391381651225
LHPIFEAKQ	9	Unmodified	_LHPIFEAKQ_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.803291312	2	541.803291	1081.59203	2.0821	0.0011281	-8.9022	-0.0048233	-6.8201	-0.0036952	541.8006990983557	25.78	0.21721	25.769	25.745	25.962	-0.0116	1212	103	0.8910048	0.062597096	0.88948536	361.42886	0	25.391998						290	10	3	NaN	NaN	NaN	0.062836	1	11747	11747		41.46	2.0013	1	52954	+		13904	8966	8047	8211	10982	10982					0.054497357142281544
LHPIFEAKQ	9	Unmodified						0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.803291	1081.59203	2.1365	0.0011575	-11.039	-0.0059809	-8.9025	-0.0048234	541.8006821638278	25.757	0.31367	25.757	25.66	25.974	0	1218	100	0.8873258	0.06075275	0.8873258	359.9365		24.64383	-0.0061279	-0.0012357	-0.0010798	NaN	41.46	365	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62445	+		13905	8966	8047	8211							0.054497357142281544
LHPIFEAKQ	9	Unmodified						0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.803291	1081.59203	2.0821	0.0011281	-8.9022	-0.0048233	-6.8201	-0.0036952	541.8006990983557	25.78	0.21721	25.769	25.745	25.962	-0.0116	1212	103	0.8910048	0.062597096	0.88948536	361.42886		25.391998	0.0061279	0.0010797	0.0010798	NaN	41.46	290	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52954	+		13906	8966	8047	8211							0.054497357142281544
LHPLDLAVL	9	Unmodified	_LHPLDLAVL_					0	0	0		ENST00000538185.1_1_11:61256765-61256957:+|nuORF	ENST00000538185.1_1_11:61256765-61256957:+|nuORF	ENST00000538185.1_1_11:61256765-61256957:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.80275999575	2	495.80276	989.590967	1.124	0.00055726	-1.4061	-0.00069714	-0.28212	-0.00013987	495.8019476894225	26.384	0.16892	26.373	26.324	26.493	-0.011137	1293	76	0.84127116	0.046134353	0.8397517	341.6535	0	18.7359						211	8	3	NaN	NaN	NaN	0.24994	1	8047	8047		22.126	1.5709	1	28618			13907	7485	8048	8212	10983	10983					0.09575521345323068
LHPPAASA	8	Unmodified	_LHPPAASA_					0	0	0			REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.20849546979997	2	382.208495	762.402438	2.6514	0.0010134	1.5702	0.00060014	4.2216	0.0016135	382.20896315929184	25.708	0.048252	25.696	25.672	25.721	-0.0116	1440	34	0.7506418	0.020398319	0.7491224	306.08954	0	8.317841						41	3	2	NaN	NaN	NaN	0.83849	1	4170	4170		4.0537	0.48046	1	3747	+		13908	12799	8049	8213	10984	10984					0.011732884917023512
LHPVELSSLM	10	Unmodified	_LHPVELSSLM_					0	0	0			REV__ENST00000462917.1_1_17:39847172-39847319:+|nuORF	REV__ENST00000462917.1_1_17:39847172-39847319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3022668567501	2	563.302267	1124.58998	1.5184	0.00085529	-10.591	-0.005966	-9.0728	-0.0051107	563.2958697885698	29.377	0.096523	29.377	29.377	29.474	0	1206	55	0.894683	0.0331074	0.894683	362.7463	0	13.423279						77	5	2	NaN	NaN	NaN	0.56921	1	13872	13872		16.584	3.5813	1	19121	+		13909	12274	8050	8214	10985	10985					0.03266938914111961
LHPVELSSLM	10	Unmodified						0	0	0			REV__ENST00000462917.1_1_17:39847172-39847319:+|nuORF	REV__ENST00000462917.1_1_17:39847172-39847319:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.302267	1124.58998	1.5184	0.00085529	-10.591	-0.005966	-9.0728	-0.0051107	563.2958697885698	29.377	0.096523	29.377	29.377	29.474	0	1206	55	0.894683	0.0331074	0.894683	362.7463		13.423279	0	0	0	NaN	16.584	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19121	+		13910	12274	8050	8214							0.03266938914111961
LHPVFSGR	8	Unmodified	_LHPVFSGR_					0	0	0			REV__nc|ENSG00000065548|Q8WU90-2|ZC3H15	REV__nc|ENSG00000065548|Q8WU90-2|ZC3H15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5050118417003	1	912.505012	911.497735	1.498	0.001367	1.7936	0.0016367	3.2917	0.0030037	912.5080988870525	41.111	0.48143	41.118	40.974	41.456	0.0074959	393	94	1.3858368	0.055393934	1.3843174	281.74	0	11.261566						792	16	4	NaN	NaN	NaN	0.8439	1	6137	6137		3.1533	0	1	195820	+		13911	13087	8051	8215	10986	10986					0.03844641682769634
LHQDRMNYALM	11	Unmodified	_LHQDRMNYALM_					0	0	0			REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3315639999502	2	696.331564	1390.64858	0.63345	0.00044109	-4.8927	-0.0034069	-4.2592	-0.0029658	696.8279494633994	39.694	0.048199	39.694	39.694	39.742	0	1152	37	0.92775106	0.022021592	0.92775106	375.28088	0	8.907867						52	3	2	NaN	NaN	NaN	0.77843	1	19987	19987		0.51604	0.13095	1	3708.2	+		13912	11001	8052	8216	10987	10987					-0.031123277830374718
LHQWEERTF	9	Unmodified	_LHQWEERTF_					0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.304186769	2	623.304187	1244.59382	1.2328	0.00076842	2.6271	0.0016375	3.8599	0.0024059	623.3061235130277	36.302	0.096416	36.302	36.254	36.35	0	1137	49	0.9369253	0.029346347	0.9369253	379.42938	0	11.88446						140	5	3	NaN	NaN	NaN	0.56671	1	17625	17625		6.8632	0.613	1	12178	+		13913	11420	8053	8217	10988	10988					-0.018692552678203356
LHQWEERTF	9	Unmodified						0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.304187	1244.59382	1.2328	0.00076842	2.6271	0.0016375	3.8599	0.0024059	623.3061235130277	36.302	0.096416	36.302	36.254	36.35	0	1137	49	0.9369253	0.029346347	0.9369253	379.42938		11.88446	-0.036074	0.0011449	-0.0001574	NaN	6.8632	140	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12178	+		13914	11420	8053	8217							-0.018692552678203356
LHQWEERTF	9	Unmodified						0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.304187	1244.59382	1.1182	0.000697	0.74797	0.00046622	1.8662	0.0011632	623.3040827746547	36.372	0.14449	36.374	36.35	36.494	0.0016747	1134	49	0.9387595	0.029346347	0.93724006	380.1722		11.88446	0.036074	-0.0011976	0.0001574	NaN	6.8632	113	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12025	+		13915	11420	8053	8217							-0.018692552678203356
LHRDCENYTE	10	Unmodified	_LHRDCENYTE_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.1839097062666	3	427.18391	1278.5299	1.3329	0.00056938	1.9958	0.00085256	3.3287	0.0014219	427.51808169789007	27.928	0.072388	27.919	27.919	27.991	-0.009552	1485	67	0.72280174	0.040896475	0.7212823	438.94113	0	24.83548						65	4	2	NaN	NaN	NaN	0.75966	1	17565	17565		1.6985	0.81385	1	3802.6			13916	3598	8054	8218	10989	10989					-0.09822403487100928
LHRLEQLLEEA	11	Unmodified	_LHRLEQLLEEA_					0	0	0			REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.8724335097003	2	675.872434	1349.73031	1.5664	0.0010587	-2.8829	-0.0019485	-1.3165	-0.00088979	675.8712569730384	20.309	0.072206	20.295	20.246	20.319	-0.014141	1113	43	0.9515937	0.025653124	0.95007426	385.0402	0	10.379913						54	4	2	NaN	NaN	NaN	0.73057	1	18668	18668		5.4499	0.43306	1	4672.4	+		13917	10429	8055	8219	10990	10990					0.06943814172086604
LHRLEQLLEEA	11	Unmodified						0	0	0			REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	675.872434	1349.73031	1.3214	0.00089311	-1.5174	-0.0010256	-0.19601	-0.00013247	675.8712441252346	20.213	0.07209	20.213	20.189	20.261	0	1113	31	0.9515937	0.018327594	0.9515937	385.0402		7.415863	-0.040944	0.0003476	0.00075972	NaN	5.4499	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4783.2	+		13918	10429	8055	8219							0.06943814172086604
LHRLEQLLEEA	11	Unmodified						0	0	0			REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	REV__nc|ENSG00000166387|Q8ND30-3|PPFIBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	675.872434	1349.73031	1.5664	0.0010587	-2.8829	-0.0019485	-1.3165	-0.00088979	675.8712569730384	20.309	0.072206	20.295	20.246	20.319	-0.014141	1113	43	0.9515937	0.025653124	0.95007426	385.0402		10.379913	0.040944	-0.0014982	-0.00075972	NaN	5.4499	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4672.4	+		13919	10429	8055	8219							0.06943814172086604
LHRPGAWL	8	Unmodified	_LHRPGAWL_					0	0	0		ENST00000290902.9_1_4:1160805-1160964:-|nuORF	ENST00000290902.9_1_4:1160805-1160964:-|nuORF	ENST00000290902.9_1_4:1160805-1160964:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.27196139385006	2	475.271961	948.52937	1.6899	0.00080314	-4.2299	-0.0020104	-2.5401	-0.0012072	475.269641315745	17.594	0.071926	17.58	17.556	17.628	-0.013567	1323	37	0.8228144	0.022160053	0.82129496	334.35617	0	9.004883						53	4	2	NaN	NaN	NaN	0.79379	1	6922	6922		10.052	1.8067	1	4352.4			13920	6386	8056	8220	10991	10991					0.05304634436708966
LHRPGAWL	8	Unmodified						0	0	0		ENST00000290902.9_1_4:1160805-1160964:-|nuORF	ENST00000290902.9_1_4:1160805-1160964:-|nuORF	ENST00000290902.9_1_4:1160805-1160964:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	475.271961	948.52937	1.7951	0.00085318	-1.5263	-0.00072539	0.26886	0.00012778	475.271133306153	17.573	0.071854	17.573	17.549	17.621	0	1320	28	0.824661	0.016619146	0.824661	335.1065		6.753296	-0.00364	0.00077916	0.001683	NaN	10.052	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4761.2			13921	6386	8056	8220							0.05304634436708966
LHRPVEKIY	9	Unmodified	_LHRPVEKIY_					0	0	0			REV__nc|ENSG00000163950|Q14493-2|SLBP	REV__nc|ENSG00000163950|Q14493-2|SLBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.5608691192667	3	385.560869	1153.66078	1.7784	0.0006857	-0.34953	-0.00013476	1.4289	0.00055093	385.56060388690673	23.007	0.07213	23.007	22.983	23.055	0	1380	34	0.7876915	0.020356357	0.7876915	478.89923	0	12.376221						98	4	3	NaN	NaN	NaN	0.55027	1	14940	14940		4.3102	0.38204	1	13095	+		13922	10310	8057	8221	10992	10992					0.09009400013951563
LHSFLPGRKM	10	Unmodified	_LHSFLPGRKM_					0	0	0			REV__nc|ENSG00000141424|Q13433-2|SLC39A6	REV__nc|ENSG00000141424|Q13433-2|SLC39A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.890220821	3	395.890221	1184.64883	1.757	0.00069559	-5.1253	-0.002029	-3.3683	-0.0013335	395.8880040508948	15.268	0.14389	15.256	15.232	15.376	-0.012202	1422	31	0.7617651	0.018532872	0.7602457	462.9937	0	11.26413						68	7	2	NaN	NaN	NaN	0.76991	1	15398	15398		2.9701	0.37063	1	5115.7	+		13923	9821	8058	8222	10993	10993					0.06389459999104474
LHSGAALV	8	Unmodified	_LHSGAALV_					0	0	0			REV__KLHL32|p.L124M|1|0.16|ENSG00000186231|chr6:97064685-97064685|C/A|missense_variant	REV__KLHL32|p.L124M|1|0.16|ENSG00000186231|chr6:97064685-97064685|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4410146014002	1	767.441015	766.433738	1.5792	0.001212	-9.818	-0.0075348	-8.2388	-0.0063228	767.4336316596241	30.391	0.12065	30.391	30.366	30.487	0	483	88	1.3321642	0.051997066	1.3321642	271.58975	0	10.600708						225	6	3	NaN	NaN	NaN	0.84455	1	4309	4309		2.7852	1.3456	1	24216	+		13924	10996	8059	8223	10994	10994					0.0411786152581044
LHSTEPME	8	Unmodified	_LHSTEPME_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4189585303001	1	943.418959	942.411682	2.3121	0.0021813	3.3439	0.0031547	5.656	0.005336	943.4219311534355	26.022	0.19312	26.011	25.962	26.156	-0.011135	291	64	1.446459	0.03738141	1.4449396	293.92093	0	7.5959167						204	9	2	NaN	NaN	NaN	0.45125	1	6727	6727		33.698	5.0318	1	27015	+		13925	11421	8060	8224	10995	10995					-0.061827310049238804
LHSTEPME	8	Unmodified						0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	943.418959	942.411682	2.0187	0.0019045	3.9	0.0036794	5.9188	0.0055839	943.4225835276648	26.022	0.14483	26.022	25.974	26.119	0	294	91	1.4446791	0.053427577	1.4446791	293.55923		10.856506	0.0056709	0.00029276	-0.00013022	NaN	33.698	225	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27548	+		13926	11421	8060	8224							-0.061827310049238804
LHSTEPME	8	Unmodified						0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	943.418959	942.411682	2.3121	0.0021813	3.3439	0.0031547	5.656	0.005336	943.4219311534355	26.022	0.19312	26.011	25.962	26.156	-0.011135	291	64	1.446459	0.03738141	1.4449396	293.92093		7.5959167	-0.0056709	-0.00023193	0.00013022	NaN	33.698	204	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27015	+		13927	11421	8060	8224							-0.061827310049238804
LHSVLYVHPV	10	Unmodified	_LHSVLYVHPV_					0	0	0			REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.55723610683333	3	388.557236	1162.64988	0.87862	0.0003414	-6.8864	-0.0026758	-6.0078	-0.0023344	388.5548935411385	12.892	0.072017	12.892	12.844	12.916	0	1467	28	0.7339432	0.01670587	0.7339432	446.1808	0	10.155853						73	4	3	NaN	NaN	NaN	0.64611	1	15238	15238		11.739	0.87744	1	4544.8	+		13928	12249	8061	8225	10996	10996					0.07505997639646012
LHTGAVSA	8	Unmodified	_LHTGAVSA_					0	0	0			REV__ENST00000421890.5_1_7:5862812-5870841:+|nuORF	REV__ENST00000421890.5_1_7:5862812-5870841:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4046290951001	1	755.404629	754.397353	1.891	0.0014285	7.9316	0.0059916	9.8227	0.0074201	755.4115134638917	23.369	0.096449	23.369	23.345	23.441	0	522	52	1.3088527	0.030513525	1.3088527	266.91196	0	6.2225647						90	5	2	NaN	NaN	NaN	0.72043	1	4148	4148		17.78	0	1	7463.6	+		13929	12113	8062	8226	10997	10997					0.010329846290915157
LHTGAVSA	8	Unmodified						0	0	0			REV__ENST00000421890.5_1_7:5862812-5870841:+|nuORF	REV__ENST00000421890.5_1_7:5862812-5870841:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.404629	754.397353	1.891	0.0014285	7.9316	0.0059916	9.8227	0.0074201	755.4115134638917	23.369	0.096449	23.369	23.345	23.441	0	522	52	1.3088527	0.030513525	1.3088527	266.91196		6.2225647	-0.017242	-9.7799E-06	0.001657	NaN	17.78	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7463.6	+		13930	12113	8062	8226							0.010329846290915157
LHTWSSFSVPC	11	Unmodified	_LHTWSSFSVPC_					0	0	0			REV__ENST00000255305.10_3_13:21396330-21396378:-|nuORF	REV__ENST00000255305.10_3_13:21396330-21396378:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2949731409002	2	632.294973	1262.57539	2.0975	0.0013262	-3.7754	-0.0023871	-1.6779	-0.0010609	632.2936456060709	25.419	0.048262	25.419	25.395	25.443	0	1134	37	0.9387595	0.022007346	0.9387595	380.11282	0	8.911011						29	3	2	NaN	NaN	NaN	0.75921	1	18045	18045		3.5698	0.30878	1	2952	+		13931	11520	8063	8227	10998	10998					-0.04539133233993198
LHTWSSFSVPC	11	Unmodified						0	0	0			REV__ENST00000255305.10_3_13:21396330-21396378:-|nuORF	REV__ENST00000255305.10_3_13:21396330-21396378:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.294973	1262.57539	2.0975	0.0013262	-3.7754	-0.0023871	-1.6779	-0.0010609	632.2936456060709	25.419	0.048262	25.419	25.395	25.443	0	1134	37	0.9387595	0.022007346	0.9387595	380.11282		8.911011	0	0	0	NaN	3.5698	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2952	+		13932	11520	8063	8227							-0.04539133233993198
LHWFPHPSSF	10	Unmodified	_LHWFPHPSSF_					0	0	0			REV__ENST00000600155.1_1_21:35321283-35321403:+|nuORF	REV__ENST00000600155.1_1_21:35321283-35321403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	418.8733357003333	3	418.873336	1253.59818	2.3079	0.00096671	2.5873	0.0010837	4.8951	0.0020504	418.87413542577275	18.626	0.024014	18.612	18.588	18.612	-0.014059	1449	25	0.74507743	0.014842391	0.743558	452.56467	0	9.015381						34	2	2	NaN	NaN	NaN	0.77421	1	17103	17103		0.71611	0.22534	1	3226.8	+		13933	12958	8064	8228	10999	10999					-0.018477460542499102
LHYANVVKW	9	Unmodified	_LHYANVVKW_					0	0	0			REV__ENSG00000162409|ENST00000371244|PRKAA2	REV__ENSG00000162409|ENST00000371244|PRKAA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.2099478352667	3	377.209948	1128.60801	2.4516	0.00092476	-4.3659	-0.0016469	-1.9143	-0.00072209	377.20757852447656	17.786	0.071945	17.772	17.7	17.772	-0.013786	1413	25	0.7673241	0.01481992	0.76580465	466.63843	0	9.012512						51	4	2	NaN	NaN	NaN	0.58547	1	13596	13596		3.2116	0	1	4152.7	+		13934	10235	8065	8229	11000	11000					0.048854419511371816
LHYIKLVFV	9	Unmodified	_LHYIKLVFV_					0	0	0			REV__ENSG00000143061|ENST00000369486|IGSF3	REV__ENSG00000143061|ENST00000369486|IGSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.90234373143335	3	377.902344	1130.6852	1.8705	0.00070687	-4.0336	-0.0015243	-2.163	-0.00081742	377.90069991235686	26.408	0.21718	26.408	26.36	26.577	0	1401	37	0.77473325	0.022222579	0.77473325	471.13376	0	13.514069						200	10	2	NaN	NaN	NaN	0.46215	1	14117	14117		11.17	2.8166	1	51617	+		13935	9857	8066	8230	11001	11001					0.1250866016746386
LHYIKLVFV	9	Unmodified						0	0	0			REV__ENSG00000143061|ENST00000369486|IGSF3	REV__ENSG00000143061|ENST00000369486|IGSF3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	377.902344	1130.6852	1.8705	0.00070687	-4.0336	-0.0015243	-2.163	-0.00081742	377.90069991235686	26.408	0.21718	26.408	26.36	26.577	0	1401	37	0.77473325	0.022222579	0.77473325	471.13376		13.514069	0	0	0	NaN	11.17	200	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51617	+		13936	9857	8066	8230							0.1250866016746386
LIALIALDRCV	11	Unmodified	_LIALIALDRCV_					0	0	0		FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant;ENSG00000171051|ENST00000304748|FPR1	FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant	FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.57753133926656	3	400.577531	1198.71076	1.2013	0.00048122	6.9552	0.0027861	8.1565	0.0032673	400.5807968214314	40.462	0.096188	40.469	40.469	40.565	0.0067558	1434	40	0.75435036	0.024101853	0.7528309	458.42523	0	14.646912						77	5	2	NaN	NaN	NaN	0.77921	1	15791	15791		0.38034	0.093258	1	6031.9			13937	4762	8067	8231	11002	11002					0.11935766627539124
LIASPLTYGKY	11	Unmodified	_LIASPLTYGKY_					0	0	0			REV__ENST00000570019.1_1_15:34666200-34666557:-|nuORF	REV__ENST00000570019.1_1_15:34666200-34666557:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.23241812299995	3	409.232418	1224.67542	2.1568	0.00088264	5.6791	0.0023241	7.8359	0.0032067	409.23476639861707	20.188	0.048197	20.174	20.174	20.222	-0.014141	1425	43	0.7599118	0.025957286	0.75839233	461.69366	0	15.770691						46	3	2	NaN	NaN	NaN	0.75376	1	16420	16420		1.5256	0	1	2836.5	+		13938	12818	8068	8232	11003	11003					0.0720742737139517
LICINLQF	8	Unmodified	_LICINLQF_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-4|GTDC1	REV__nc|ENSG00000121964|Q4AE62-4|GTDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.27023844685004	2	482.270238	962.525924	1.9811	0.00095542	1.1892	0.00057354	3.1703	0.001529	482.27060442457173	31.138	0.096512	31.133	31.084	31.181	-0.0050716	1299	76	0.8375814	0.046149373	0.83606195	340.2861	0	18.749207						85	5	2	NaN	NaN	NaN	0.80071	1	7255	7255		9.1232	0	1	5939.5	+		13939	13110	8069	8233	11004	11004					0.04316203547830355
LIDEVMVLL	9	Unmodified	_LIDEVMVLL_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.6009456413	1	1044.60095	1043.59367	1.1281	0.0011785	-0.96382	-0.0010068	0.16431	0.00017164	1044.6006703958706	38.324	0.36044	38.324	38.275	38.636	0	90	100	1.5652816	0.058332443	1.5652816	317.6212	0	11.836609						668	16	5	NaN	NaN	NaN	0.023074	1	10373	10373		68.108	6.1317	1	118940			13940	806	8070	8234	11005	11005					0.0736160868798379
LIDNYSYR	8	Unmodified	_LIDNYSYR_					0	0	0		ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.26145628705	2	522.261456	1042.50836	1.3468	0.00070339	5.2331	0.002733	6.5799	0.0034364	522.2642975553584	32.297	0.33786	32.297	32.152	32.49	0	1275	109	0.85233563	0.06633663	0.85233563	345.9059	0	26.9216						846	15	3	NaN	NaN	NaN	0.72013	1	10323	10323		17.799	2.6236	1	107470			13941	4667	8071	8235	11006	11006					-0.011194204534831442
LIDQELLSM	9	Unmodified	_LIDQELLSM_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5547237301998	1	1061.55472	1060.54745	2.0937	0.0022226	-3.7321	-0.0039618	-1.6384	-0.0017393	1061.5490398846732	29.811	0.19305	29.811	29.739	29.932	0	99	163	1.5599792	0.09558976	1.5599792	316.47925	0	19.39267						454	9	4	NaN	NaN	NaN	0.032689	1	11129	11129		55.592	8.1101	1	64595			13942	2061	8072	8236	11007	11007					0.01959543785869755
LIDQELLSM	9	Unmodified	_LIDQELLSM_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5547237301998	1	1061.55472	1060.54745	1.2778	0.0013564	-3.7956	-0.0040292	-2.5178	-0.0026728	1061.5492747989424	29.811	0.1689	29.803	29.731	29.9	-0.0070648	96	169	1.5617468	0.09913015	1.5602274	316.83783	0	20.110931						346	8	2	NaN	NaN	NaN	0.02857	1	10877	10877		60.982	5.5685	1	65591			13943	2061	8072	8236	11008	11008					0.01959543785869755
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(110)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.27845740945	2	539.278457	1076.54236	2.0982	0.0011315	-1.3587	-0.00073273	0.73951	0.0003988	539.2779261874123	25.274	0.19302	25.274	25.226	25.419	0	1242	85	0.87260187	0.051567256	0.87260187	353.9847	0	20.919067						331	9	3	NaN	NaN	NaN	0.0035249	1	11826	11826		106.42	33.996	1	105460			13944	2061	8072	8237	11009	11009		237			0.0071523992323818675
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(95)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5496383522998	1	1077.54964	1076.54236	1.6997	0.0018315	0.11837	0.00012754	1.8181	0.001959	1077.5496174894536	25.274	0.12063	25.274	25.25	25.371	0	111	73	1.5529068	0.042443752	1.5529068	314.98428	0	8.6091						207	6	3	NaN	NaN	NaN	0.0085768	1	11827	11827		95.291	28.634	1	24810			13945	2061	8072	8237	11010	11010		237			0.0071523992323818675
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(67)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.27845740945	2	539.278457	1076.54236	1.7884	0.00096443	-1.5096	-0.00081408	0.27879	0.00015034	539.277830887581	25.274	0.21712	25.262	25.165	25.382	-0.012011	1242	79	0.87260187	0.047889054	0.8710824	353.9847	0	19.42694						302	10	3	NaN	NaN	NaN	0.024221	1	11513	11513		66.656	8.421	1	117230			13946	2061	8072	8237	11011	11011		237			0.0071523992323818675
LIDQELLSM	9	Oxidation (M)	_LIDQELLSM(Oxidation (M))_		LIDQELLSM(1)		LIDQELLSM(72)	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5496383522998	1	1077.54964	1076.54236	2.0923	0.0022545	0.92848	0.0010005	3.0207	0.003255	1077.5515020732373	25.274	0.096455	25.262	25.238	25.334	-0.012011	108	70	1.5546752	0.040668845	1.5531558	315.34296	0	8.249054						199	5	4	NaN	NaN	NaN	0.019939	1	11515	11515		72.076	11.093	1	21506			13947	2061	8072	8237	11012	11012		237			0.0071523992323818675
LIEELAIAK	9	Unmodified	_LIEELAIAK_					0	0	0		nc|ENSG00000204130|Q8WXA3-5|RUFY2;nc|ENSG00000204130|Q8WXA3-4|RUFY2;ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2	nc|ENSG00000204130|Q8WXA3-5|RUFY2	nc|ENSG00000204130|Q8WXA3-5|RUFY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.30787516339996	2	500.307875	998.601197	2.9115	0.0014566	-5.4036	-0.0027035	-2.4921	-0.0012468	500.3050726432747	27.011	0.024158	27.001	27.001	27.025	-0.010126	1269	22	0.8560222	0.01290226	0.85450274	347.60114	0	5.2391663						17	2	2	NaN	NaN	NaN	0.62619	1	8358	8358		4.4131	0	1	1176.3			13948	5863	8073	8238	11013	11013					0.10184084279887884
LIEKIVMWP	9	Unmodified	_LIEKIVMWP_					0	0	0			REV__ENSG00000141040|ENST00000395825|ZNF287	REV__ENSG00000141040|ENST00000395825|ZNF287	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.88770582303334	3	376.887706	1127.64129	1.3747	0.00051811	0.91272	0.00034399	2.2874	0.00086211	377.2218355378489	21.055	0.072216	21.055	21.031	21.103	0	1539	55	0.68933374	0.033489764	0.68933374	419.2139	0	20.366608						63	4	2	NaN	NaN	NaN	0.67312	1	14006	14006		1.5054	0.32859	1	4815.6	+		13949	9815	8074	8239	11014	11014					0.08257307678832149
LIEKSELLF	9	Unmodified	_LIEKSELLF_					0	0	0			REV__tr|U7SZQ1|U7SZQ1_FUSNUEthanolamineutilizationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00828PE=4SV=1	REV__tr|U7SZQ1|U7SZQ1_FUSNUEthanolamineutilizationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00828PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.32098253865	2	546.320983	1090.62741	0.89262	0.00048765	-1.7898	-0.00097782	-0.8972	-0.00049016	546.320215108341	31.887	0.072416	31.887	31.863	31.935	0	1230	40	0.8799654	0.023925126	0.8799654	356.9136	0	9.704041						94	4	3	NaN	NaN	NaN	0.63698	1	12441	12441		3.9685	0	1	9283.8	+		13950	13562	8075	8240	11015	11015					0.0857235345135905
LIESPLEA	8	Unmodified	_LIESPLEA_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-5|HECTD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.4771253362	1	871.477125	870.469849	1.4506	0.0012642	-9.684	-0.0084394	-8.2335	-0.0071753	871.4681792943866	26.964	0.048241	26.964	26.94	26.988	0	429	34	1.3643885	0.019672632	1.3643885	277.57397	0	4.002228						51	3	2	NaN	NaN	NaN	0.77489	1	5667	5667		12.588	1.0394	1	3255.9	+		13951	10665	8076	8241	11016	11016					0.029432739119897633
LIESPPGA	8	Unmodified	_LIESPPGA_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4246958352	1	783.424696	782.417419	1.3866	0.0010863	5.8636	0.0045937	7.2502	0.00568	783.4293127001047	32.755	0.12067	32.752	32.679	32.8	-0.0031013	480	49	1.3339561	0.028671265	1.3324367	271.85727	0	5.8431396						95	6	2	NaN	NaN	NaN	0.8439	1	4445	4445		3.1533	0	1	8222.4	+		13952	9379	8077	8242	11017	11017					0.017507355690440818
LIESPPGA	8	Unmodified						0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.424696	782.417419	1.3866	0.0010863	5.8636	0.0045937	7.2502	0.00568	783.4293127001047	32.755	0.12067	32.752	32.679	32.8	-0.0031013	480	49	1.3339561	0.028671265	1.3324367	271.85727		5.8431396	-0.0020956	0.00025138	0.00013621	NaN	3.1533	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8222.4	+		13953	9379	8077	8242							0.017507355690440818
LIFFGTAQNF	10	Unmodified	_LIFFGTAQNF_					0	0	0		nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF;ENSG00000184445|ENST00000333479|KNTC1	nc|ENSG00000184445|P50748-2|KNTC1	nc|ENSG00000184445|P50748-2|KNTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3031241365001	2	579.303124	1156.5917	1.5845	0.00091788	-4	-0.0023172	-2.4156	-0.0013993	579.3021945616223	26.36	0.12065	26.349	26.3	26.421	-0.011135	1185	67	0.90755045	0.040434003	0.906031	367.84006	0	16.388367						260	6	4	NaN	NaN	NaN	0.69717	1	14540	14540		8.2448	1.8149	1	31641			13954	5352	8078	8243	11018	11018					0.0196631599437751
LIFRTPHLRW	10	Unmodified	_LIFRTPHLRW_					0	0	0		ENST00000528621.5_1_11:57529333-57558996:+|nuORF	ENST00000528621.5_1_11:57529333-57558996:+|nuORF	ENST00000528621.5_1_11:57529333-57558996:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.93129638056666	3	446.931296	1337.77206	1.4119	0.00063104	5.5553	0.0024828	6.9672	0.0031139	446.9335343904181	21.344	0.16835	21.33	21.282	21.45	-0.014006	1398	28	0.77658504	0.016666055	0.7750656	471.37958	0	10.116119						81	8	2	NaN	NaN	NaN	0.77201	1	18516	18516		2.4611	0.11161	1	6139.8			13955	7438	8079	8244	11019	11019					0.11668459441875711
LIGAQAHA	8	Unmodified	_LIGAQAHA_					0	0	0		nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	nc|ENSG00000103313|O15553-1|MEFV	nc|ENSG00000103313|O15553-1|MEFV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.4362635745	1	780.436264	779.428987	1.8321	0.0014298	-5.7949	-0.0045225	-3.9628	-0.0030927	780.4317450115527	27.953	0.096521	27.953	27.905	28.001	0	495	49	1.3249949	0.028686523	1.3249949	270.0489	0	5.8466187						113	5	2	NaN	NaN	NaN	0.78605	1	4480	4480		11.091	1.0391	1	10460			13956	1429	8080	8245	11020	11020					0.030449773830355298
LIGCKKPV	8	Unmodified	_LIGCKKPV_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.5277211187001	1	857.527721	856.520445	-0.049001	-4.202E-05	-0.61635	-0.00052853	-0.66535	-0.00057055	857.5281340164099	58.003	0.024006	58.002	58.002	58.026	-0.00051117	360	46	1.405474	0.026763558	1.4039545	286.00488	0	5.446228						51	2	2	NaN	NaN	NaN	0.84876	1	5360	5360		0.39566	0	1	4310			13957	5844	8081	8246	11021	11021					0.08644524756016381
LIGIGGLF	8	Unmodified	_LIGIGGLF_					0	0	0		ENST00000464676.5_1_3:133669982-133717557:-|nuORF;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENSG00000174640|ENST00000310926|SLCO2A1	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4869021615002	1	789.486902	788.479626	1.8216	0.0014381	0.18301	0.00014448	2.0046	0.0015826	789.4871418626674	30.391	0.14478	30.391	30.342	30.487	0	498	88	1.3232021	0.051980495	1.3232021	269.6299	0	10.592102						290	7	3	NaN	NaN	NaN	0.60626	1	4613	4613		24.901	0	1	49285			13958	4956	8082	8247	11022	11022					0.0769250670805377
LIGLTVAILHW	11	Unmodified	_LIGLTVAILHW_					0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3791661195501	2	618.379166	1234.74378	0.7632	0.00047195	-4.5804	-0.0028324	-3.8172	-0.0023604	618.3766842656315	39.068	0.31346	39.068	39.068	39.382	0	1185	94	0.90755045	0.056990623	0.90755045	367.56558	0	23.081696						1055	14	6	NaN	NaN	NaN	0.76304	1	17407	17407		3.2116	0.32214	1	343260	+		13959	12676	8083	8248	11023	11023					0.1357971674192413
LIGLTVAILHW	11	Unmodified						0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.379166	1234.74378	0.7632	0.00047195	-4.5804	-0.0028324	-3.8172	-0.0023604	618.3766842656315	39.068	0.31346	39.068	39.068	39.382	0	1185	94	0.90755045	0.056990623	0.90755045	367.56558		23.081696	-0.0013191	0.00024508	0.00075972	NaN	3.2116	1055	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343260	+		13960	12676	8083	8248							0.1357971674192413
LIGLTVAILHW	11	Unmodified						0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.379166	1234.74378	1.321	0.00081689	-4.9321	-0.0030499	-3.6111	-0.002233	618.3763568867188	39.066	0.52964	39.071	39.047	39.577	0.0046806	1185	97	0.90755045	0.05882591	0.906031	367.56558		23.824982	0.0013191	-0.00018994	-0.00075972	NaN	3.2116	1355	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373180	+		13961	12676	8083	8248							0.1357971674192413
LIGSAVSGG	9	Unmodified	_LIGSAVSGG_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.4199448083002	1	760.419945	759.412668	1.0521	0.00080004	4.5372	0.0034502	5.5893	0.0042502	760.4236035957323	32.2	0.12064	32.196	32.148	32.268	-0.0037613	519	49	1.310647	0.028707981	1.3091276	267.2464	0	5.853668						128	6	2	NaN	NaN	NaN	0.55027	1	4134	4134		7.5404	0	1	12031	+		13962	10895	8084	8249	11024	11024					0.02333851426305955
LIGSAVSGG	9	Unmodified						0	0	0			REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	760.419945	759.412668	1.2185	0.00092656	5.1416	0.0039098	6.3601	0.0048363	760.4240898526785	32.225	0.14478	32.225	32.152	32.297	0	522	52	1.3088527	0.030507088	1.3088527	266.8805		6.22052	0.014496	0.00019926	-0.00013745	NaN	7.5404	112	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11529	+		13963	10895	8084	8249							0.02333851426305955
LIGSAVSGG	9	Unmodified						0	0	0			REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	REV__nc|ENSG00000183530|Q5THK1-3|PRR14L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	760.419945	759.412668	1.0521	0.00080004	4.5372	0.0034502	5.5893	0.0042502	760.4236035957323	32.2	0.12064	32.196	32.148	32.268	-0.0037613	519	49	1.310647	0.028707981	1.3091276	267.2464		5.853668	-0.014496	-0.00026031	0.00013745	NaN	7.5404	128	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12031	+		13964	10895	8084	8249							0.02333851426305955
LIGYNTFSSS	10	Unmodified	_LIGYNTFSSS_					0	0	0		tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5258664428	1	1088.52587	1087.51859	0.81958	0.00089214	1.7703	0.0019271	2.5899	0.0028192	1089.5312175116383	30.341	0.31368	30.335	30.238	30.552	-0.0064106	87	100	1.5670487	0.058332443	1.5655292	317.81213	0	11.830353						537	14	3	NaN	NaN	NaN	0.44412	1	11964	11964		21.771	1.3224	1	55011			13965	13993	8085	8250	11025	11025					-0.021668575189096373
LIIAARNGHAK	11	Unmodified	_LIIAARNGHAK_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.57176815656663	3	388.571768	1162.69348	0.55622	0.00021613	0.37528	0.00014582	0.9315	0.00036195	388.57196905564734	39.694	0.096428	39.694	39.694	39.791	0	1434	85	0.75435036	0.051880836	0.75435036	458.58655	0	31.53952						172	5	3	NaN	NaN	NaN	0.77166	1	15244	15244		0.49077	0	1	18394			13966	4649	8086	8251	11026	11026					0.1186360713677459
LIIGILLPN	9	Unmodified	_LIIGILLPN_					0	0	0			REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	REV__tr|U7T5I4|U7T5I4_FUSNUTIGR00659familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00161PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.6393800581002	1	965.63938	964.632104	-0.49096	-0.00047409	2.3318	0.0022517	1.8409	0.0017776	965.6416822046526	52.138	0.14369	52.138	52.09	52.234	-0.00031662	171	73	1.5174994	0.042547345	1.51598	308.25403	0	8.642792						231	7	3	NaN	NaN	NaN	0.48931	1	7327	7327		10.052	0	1	26012	+		13967	13615	8087	8252	11027	11027					0.1483728238480353
LIINKDPTL	9	Unmodified	_LIINKDPTL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.81332468205	2	513.813325	1025.6121	1.8627	0.0009571	-8.2565	-0.0042423	-6.3937	-0.0032852	513.8091975334584	21.344	0.12036	21.344	21.248	21.368	0	1254	52	0.8652351	0.031327307	0.8652351	351.2164	0	12.7164						71	6	2	NaN	NaN	NaN	0.10363	1	9611	9611		35.296	14.741	1	4382			13968	2470	8088	8253	11028	11028					0.10031486654179389
LIINKDPTL	9	Unmodified	_LIINKDPTL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.81332468205	2	513.813325	1025.6121	1.0672	0.00054836	-1.0715	-0.00055053	-0.0042243	-2.1705E-06	513.8121740388574	21.248	0.072168	21.234	21.21	21.282	-0.014004	1296	85	0.8394264	0.051673353	0.83790696	340.7401	0	20.97525						185	4	3	NaN	NaN	NaN	0.050761	1	9420	9420		46.588	11.291	1	26995			13969	2470	8088	8253	11029	11029					0.10031486654179389
LIIYSTVFW	9	Unmodified	_LIIYSTVFW_					0	0	0		ENST00000478112.1_1_10:71211350-71243770:+|nuORF;ENSG00000099282|ENST00000373290|TSPAN15	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3182428844501	2	571.318243	1140.62193	1.1944	0.00068238	-1.9933	-0.0011388	-0.79885	-0.0004564	571.3167308901799	35.771	0.096443	35.771	35.723	35.82	0	1203	58	0.8965218	0.034948587	0.8965218	363.42993	0	14.167389						123	5	3	NaN	NaN	NaN	0.61413	1	14479	14479		4.9097	0.94122	1	8419.8			13970	1151	8089	8254	11030	11030					0.05724674659563789
LIIYSTVFW	9	Unmodified						0	0	0		ENST00000478112.1_1_10:71211350-71243770:+|nuORF;ENSG00000099282|ENST00000373290|TSPAN15	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.318243	1140.62193	0.74553	0.00042593	-1.4349	-0.00081978	-0.68936	-0.00039385	571.3177094784128	35.77	0.12045	35.77	35.722	35.843	0.00053024	1206	79	0.894683	0.04779601	0.89316356	362.68454		19.375427	-0.00050888	0.00033035	-0.0016791	NaN	4.9097	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9579.6			13971	1151	8089	8254							0.05724674659563789
LIKELSDIPLL	11	Unmodified	_LIKELSDIPLL_					0	0	0			REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	REV__tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3893964548502	2	627.389396	1252.76424	1.6843	0.0010567	-11.062	-0.0069403	-9.3779	-0.0058836	627.383130420259	39.115	0.38527	39.119	39.095	39.48	0.0046806	1194	121	0.902037	0.07359594	0.9005176	365.2745	0	29.802216						1150	17	3	NaN	NaN	NaN	0.74794	1	17086	17086		4.3102	0	1	586030	+		13972	13408	8090	8255	11031	11031					0.14796842611099237
LIKKGNAKEFW	11	Unmodified	_LIKKGNAKEFW_					0	0	0			REV__tr|U7T495|U7T495_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00390PE=4SV=1	REV__tr|U7T495|U7T495_FUSNUMethyltransferasetype11domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00390PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3849797789501	2	667.38498	1332.75541	1.6828	0.0011231	-11.646	-0.0077725	-9.9635	-0.0066495	667.3775709705138	23.778	0.1686	23.778	23.682	23.851	0	1074	37	0.9754029	0.021962345	0.9754029	394.72504	0	8.887665						154	8	3	NaN	NaN	NaN	0.688	1	19302	19302		8.2448	1.8149	1	14628	+		13973	13605	8091	8256	11032	11032					0.10233913765273428
LIKLFLSSESF	11	Unmodified	_LIKLFLSSESF_					0	0	0		ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3659213585499	2	642.365921	1282.71729	3.3901	0.0021777	-5.4486	-0.0035	-2.0585	-0.0013223	642.363682052457	39.066	0.72191	39.071	38.903	39.625	0.0046806	1221	133	0.885486	0.08094674	0.88396657	358.48096	0	32.77057						4384	31	6	NaN	NaN	NaN	0.76488	1	17660	17660		2.8895	0.29002	1	7250900			13974	14029	8092	8257	11033	11033					0.08723983059917373
LILIYSVE	8	Unmodified	_LILIYSVE_					0	0	0		nc|ENSG00000104983|Q9Y6R9-2|CCDC61;ENSG00000104983|ENST00000595358|CCDC61	nc|ENSG00000104983|Q9Y6R9-2|CCDC61	nc|ENSG00000104983|Q9Y6R9-2|CCDC61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.5604610351002	1	949.560461	948.553185	2.2764	0.0021616	2.341	0.0022229	4.6175	0.0043846	949.5636180393884	41.617	0.023994	41.625	41.601	41.625	0.0082588	1056	43	0.9863805	0.02561444	0.9848611	200.41412	0	5.204376						40	2	2	NaN	NaN	NaN	0.84876	1	6923	6923		0.39566	0	1	1770.3			13975	1508	8093	8258	11034	11034					0.07685010359864464
LILKFCRG	8	Unmodified	_LILKFCRG_					0	0	0			REV__ENSG00000137947|ENST00000370500|GTF2B	REV__ENSG00000137947|ENST00000370500|GTF2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.5651692575002	1	949.565169	948.557893	0.94838	0.00090055	-1.911	-0.0018146	-0.96262	-0.00091407	949.5634864330974	39.334	0.048096	39.334	39.31	39.358	0	1086	49	0.9680805	0.029302001	0.9680805	196.6959	0	5.953644						63	3	2	NaN	NaN	NaN	0.84727	1	7052	7052		1.2418	0.16982	1	3907.2	+		13976	9702	8094	8259	11035	11035					0.08155616021633705
LILKFCRG	8	Unmodified						0	0	0			REV__ENSG00000137947|ENST00000370500|GTF2B	REV__ENSG00000137947|ENST00000370500|GTF2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	949.565169	948.557893	0.94838	0.00090055	-1.911	-0.0018146	-0.96262	-0.00091407	949.5634864330974	39.334	0.048096	39.334	39.31	39.358	0	1086	49	0.9680805	0.029302001	0.9680805	196.6959		5.953644	0	0	0	NaN	1.2418	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3907.2	+		13977	9702	8094	8259							0.08155616021633705
LILLYGSS	8	Unmodified	_LILLYGSS_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562002	1	865.502946	864.49567	1.3406	0.0011603	-0.61625	-0.00053337	0.72435	0.00062692	865.5022338477771	37.097	0.048199	37.097	37.072	37.121	0	507	46	1.3178225	0.02690363	1.3178225	268.1293	0	5.4739075						71	3	2	NaN	NaN	NaN	0.84876	1	5599	5599		0.39566	0	1	9059.1	+		13978	9350	8095	8260	11036	11036					0.05800168154291896
LILQSRVAPT	10	Unmodified	_LILQSRVAPT_					0	0	0			REV__ENST00000514473.2_1_14:22849590-22849821:-|nuORF	REV__ENST00000514473.2_1_14:22849590-22849821:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.3374982701001	2	549.337498	1096.66044	1.1107	0.00061018	-2.224	-0.0012217	-1.1132	-0.00061153	549.336833239207	27.205	0.096502	27.205	27.181	27.277	0	1218	55	0.8873258	0.033114612	0.8873258	359.87427	0	13.430328						127	5	3	NaN	NaN	NaN	0.5358	1	12713	12713		17.97	1.3855	1	21208	+		13979	12570	8096	8261	11037	11037					0.11597980294095578
LILTTESIMK	10	Unmodified	_LILTTESIMK_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8333998096501	2	574.8334	1147.65225	1.4829	0.00085243	6.7453	0.0038774	8.2282	0.0047299	574.8372044323222	24.816	0.14479	24.816	24.791	24.936	0	1185	43	0.90755045	0.025727928	0.90755045	367.87375	0	10.428772						77	7	2	NaN	NaN	NaN	0.69717	1	14741	14741		8.2448	1.2605	1	8144.8			13980	3643	8097	8262	11038	11038					0.08432665262466799
LILTTESIMK	10	Unmodified						0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.8334	1147.65225	1.7011	0.00097786	7.4047	0.0042565	9.1058	0.0052343	574.8380287363007	24.815	0.048271	24.803	24.779	24.827	-0.012394	1188	28	0.90571284	0.0165385	0.9041934	367.12888		6.7038574	-0.0062768	0.00042376	-0.0016785	NaN	8.2448	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3851.8			13981	3643	8097	8262							0.08432665262466799
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENSG00000167118|ENST00000372853|URM1	ENSG00000167118|ENST00000372853|URM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7665714547	2	544.766571	1087.51859	1.4065	0.00076622	-1.863	-0.0010149	-0.45649	-0.00024868	544.7654343488631	28.991	0.19306	28.991	28.967	29.16	0	1284	70	0.8468043	0.042397797	0.8468043	343.4757	0	17.197113						279	9	4	NaN	NaN	NaN	0.03618	1	12271	12271		52.78	22.17	1	55956			13982	4528	8098	8263	11039	11039					-0.021668575189096373
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENSG00000167118|ENST00000372853|URM1	ENSG00000167118|ENST00000372853|URM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5258664428	1	1088.52587	1087.51859	1.8558	0.00202	-0.5287	-0.00057551	1.3271	0.0014445	1088.5261510777498	28.991	0.072433	28.991	28.967	29.039	0	114	76	1.5511382	0.044223905	1.5511382	314.58536	0	8.969055						134	4	2	NaN	NaN	NaN	0.01966	1	12272	12272		72.428	19.288	1	42905			13983	4528	8098	8263	11040	11040					-0.021668575189096373
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENSG00000167118|ENST00000372853|URM1	ENSG00000167118|ENST00000372853|URM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7665714547	2	544.766571	1087.51859	1.2022	0.00065489	-1.6038	-0.0008737	-0.40166	-0.00021881	544.7657963016952	28.99	0.21718	28.982	28.958	29.175	-0.0077229	1284	58	0.8468043	0.03503555	0.8452849	343.4757	0	14.2109375						259	10	4	NaN	NaN	NaN	0.02857	1	11962	11962		60.982	23.679	1	59367			13984	4528	8098	8263	11041	11041					-0.021668575189096373
LINDADWEL	9	Unmodified	_LINDADWEL_					0	0	0		ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENSG00000167118|ENST00000372853|URM1	ENSG00000167118|ENST00000372853|URM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5258664428	1	1088.52587	1087.51859	0.90034	0.00098005	0.026464	2.8807E-05	0.92681	0.0010089	1088.5264329415236	28.99	0.072392	28.982	28.958	29.031	-0.0077229	111	64	1.5529068	0.03714025	1.5513873	314.94403	0	7.5324097						129	4	2	NaN	NaN	NaN	0.017558	1	11963	11963		75.089	14.105	1	38561			13985	4528	8098	8263	11042	11042					-0.021668575189096373
LINTLYIGF	9	Unmodified	_LINTLYIGF_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.3025928202501	2	527.302593	1052.59063	0.90524	0.00047734	-1.3019	-0.00068647	-0.39662	-0.00020914	527.3022823677977	27.18	0.24131	27.17	27.074	27.315	-0.010124	1233	76	0.87812483	0.046019793	0.8766054	356.32758	0	18.674011						352	11	4	NaN	NaN	NaN	0.33202	1	10530	10530		16.858	1.0364	1	54170	+		13986	8823	8099	8264	11043	11043					0.06644101625465737
LIPETLVML	9	Unmodified	_LIPETLVML_					0	0	0			REV__ENSG00000188001|ENST00000345063|TPRG1	REV__ENSG00000188001|ENST00000345063|TPRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.6060310192001	1	1028.60603	1027.59875	1.4183	0.0014589	1.0139	0.0010429	2.4322	0.0025018	1028.6070102282058	37.287	0.072308	37.289	37.265	37.337	0.0022507	126	43	1.544062	0.024771929	1.5425426	313.37897	0	5.027649						67	4	2	NaN	NaN	NaN	0.17818	1	9502	9502		26.732	0.61661	1	4746.5	+		13987	11044	8100	8265	11044	11044					0.0860591255059262
LIPIHADPR	9	Unmodified	_LIPIHADPR_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	344.5380644805333	3	344.538064	1030.59236	2.2327	0.00076926	-1.7781	-0.00061261	0.45467	0.00015665	344.5373318453078	17.717	0.11982	17.717	17.669	17.789	0	1491	76	0.7190863	0.046420276	0.7190863	437.8038	0	28.262207						294	6	4	NaN	NaN	NaN	0.2961	1	9819	9819		13.101	0	1	73434			13988	4782	8101	8266	11045	11045					0.07829155434069435
LIPKGVRR	8	Unmodified	_LIPKGVRR_					0	0	0		PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant;nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant	PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.6257956794002	1	938.625796	937.618519	1.9209	0.0018031	3.0669	0.0028787	4.9878	0.0046817	938.6283514525799	57.165	0.048019	57.165	57.141	57.189	0	213	34	1.4926696	0.019522548	1.4926696	303.33325	0	3.9672852						33	3	2	NaN	NaN	NaN	0.84887	1	6774	6774		0.32989	0	1	1965.8			13989	2105	8102	8267	11046	11046					0.14721469396226894
LIQEKMRDQ	9	Unmodified	_LIQEKMRDQ_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8082476916501	2	580.808248	1159.60194	1.1911	0.00069182	-8.4744	-0.004922	-7.2833	-0.0042302	580.8038869151034	33.19	0.12066	33.19	33.166	33.287	0	1194	67	0.902037	0.040451527	0.902037	365.59424	0	16.394928						227	6	4	NaN	NaN	NaN	0.25548	1	15126	15126		21.771	4.9128	1	42649	+		13990	10589	8103	8268	11047	11047					0.02852555657295852
LIQEKMRDQ	9	Unmodified						0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.808248	1159.60194	1.1911	0.00069182	-8.4744	-0.004922	-7.2833	-0.0042302	580.8038869151034	33.19	0.12066	33.19	33.166	33.287	0	1194	67	0.902037	0.040451527	0.902037	365.59424		16.394928	0.0019056	-0.0012905	-0.00015929	NaN	21.771	227	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42649	+		13991	10589	8103	8268							0.02852555657295852
LIQMTKEEL	9	Unmodified	_LIQMTKEEL_					0	0	0		nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-2|NLRP11	nc|ENSG00000179873|P59045-2|NLRP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8020996812501	2	552.8021	1103.58965	0.99588	0.00055052	-8.1947	-0.0045301	-7.1988	-0.0039795	552.7980192271448	20.646	0.072237	20.646	20.622	20.694	0	1239	40	0.87444305	0.023932874	0.87444305	354.62177	0	9.7057495						76	4	2	NaN	NaN	NaN	0.10363	1	13003	13003		35.296	0.8425	1	8535.6			13992	5171	8104	8269	11048	11048					0.04199519194253298
LIQMTKEEL	9	Unmodified						0	0	0		nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-2|NLRP11	nc|ENSG00000179873|P59045-2|NLRP11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.8021	1103.58965	1.2146	0.00067141	-6.0524	-0.0033458	-4.8379	-0.0026744	552.798006787155	20.67	0.07238	20.656	20.632	20.704	-0.014086	1236	31	0.876284	0.018410921	0.8747646	355.36835		7.4663696	0.0051678	0.0010848	0.00016078	NaN	35.296	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8146.3			13993	5171	8104	8269							0.04199519194253298
LISDPVLLV	9	Unmodified	_LISDPVLLV_					0	0	0		nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;ENST00000483291.1_1_22:26743758-26747244:+|nuORF;nc|ENSG00000100095|Q9BYH1-2|SEZ6L;nc|ENSG00000100095|Q9BYH1-3|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.6026602008001	1	968.60266	967.595384	0.51836	0.00050208	1.6803	0.0016275	2.1986	0.0021296	968.6039187628205	35.553	0.12065	35.553	35.529	35.65	0.00052643	201	58	1.4997677	0.033713818	1.4982482	304.63898	0	6.8480835						188	6	3	NaN	NaN	NaN	0.043119	1	7404	7404		49.833	5.5305	1	22432			13994	1192	8105	8270	11049	11049					0.11028985768234634
LISELPQQ	8	Unmodified	_LISELPQQ_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.P813Lfs*22|1|0.21|ENSG00000214655|chr10:73793708-73793708|C/-|frameshift_variant;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.2609249708	2	464.260925	926.507297	1.495	0.00069406	-0.25102	-0.00011654	1.244	0.00057752	464.2606100714947	18.005	0.14388	18.005	17.957	18.101	0	1371	37	0.79324204	0.022198498	0.79324204	322.4486	0	9.02356						112	7	2	NaN	NaN	NaN	0.75561	1	6524	6524		15.175	1.4383	1	11952			13995	8035	8106	8271	11050	11050					0.04110365177609765
LISPEWVL	8	Unmodified	_LISPEWVL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5451453219001	1	956.545145	955.537869	1.1705	0.0011196	-0.43108	-0.00041235	0.73937	0.00070724	956.5451939680638	32.828	0.14479	32.828	32.78	32.925	0	255	106	1.4678029	0.062196612	1.4678029	298.19897	0	12.635864						373	7	3	NaN	NaN	NaN	0.032886	1	7236	7236		100.37	43.401	1	45712			13996	2314	8107	8272	11051	11051					0.058321435626680795
LISPEWVL	8	Unmodified	_LISPEWVL_					0	0	0		ENSG00000122194|ENST00000308192|PLG;ENSG00000198670|ENST00000316300|LPA	ENSG00000122194|ENST00000308192|PLG	ENSG00000122194|ENST00000308192|PLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5451453219001	1	956.545145	955.537869	1.2534	0.0011989	-0.035292	-3.3759E-05	1.2181	0.0011651	956.5455142196294	32.827	0.14474	32.824	32.8	32.945	-0.0031052	252	118	1.4695803	0.069304824	1.4680609	298.5601	0	14.079987						378	7	3	NaN	NaN	NaN	0.14214	1	7096	7096		55.947	11.645	1	44169			13997	2314	8107	8272	11052	11052					0.058321435626680795
LISPPQAG	8	Unmodified	_LISPPQAG_					0	0	0			REV__WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	REV__WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4406802504001	1	782.44068	781.433404	1.5727	0.0012305	3.7288	0.0029176	5.3015	0.0041481	782.4434064101032	30.56	0.072403	30.56	30.511	30.584	0	489	34	1.3285799	0.019714713	1.3285799	270.7675	0	4.0178833						54	4	2	NaN	NaN	NaN	0.84207	1	4511	4511		3.5732	0	1	4219.8	+		13998	8682	8108	8273	11053	11053					0.033944418059491
LISRPGPSY	9	Unmodified	_LISRPGPSY_					0	0	0			REV__ENSG00000237110|ENST00000434551|TAAR9	REV__ENSG00000237110|ENST00000434551|TAAR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.5414569275001	1	989.541457	988.53418	2.123	0.0021008	-11.246	-0.011129	-9.1232	-0.0090278	989.53048967255	53.266	0.096138	53.266	53.242	53.338	0	186	76	1.5086359	0.04433191	1.5086359	306.34924	0	9.002228						131	5	2	NaN	NaN	NaN	0.47587	1	8167	8167		10.605	0.85897	1	10380	+		13999	11330	8109	8274	11054	11054					0.03945473788803611
LISSDYEL	8	Unmodified	_LISSDYEL_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4669545804	1	939.466955	938.459678	1.1288	0.0010604	0.27334	0.0002568	1.4021	0.0013172	939.4669589007506	24.285	0.096533	24.285	24.261	24.357	0	300	76	1.4411188	0.044520736	1.4411188	292.85355	0	9.04715						95	5	2	NaN	NaN	NaN	0.76633	1	6784	6784		13.737	4.6139	1	11615			14000	1553	8110	8275	11055	11055					-0.012013338132305762
LISSDYEL	8	Unmodified	_LISSDYEL_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4669545804	1	939.466955	938.459678	1.866	0.001753	-0.24329	-0.00022856	1.6227	0.0015245	939.4658373520522	24.285	0.096563	24.272	24.248	24.344	-0.012749	294	67	1.4446791	0.03916776	1.4431597	293.57706	0	7.959381						144	5	3	NaN	NaN	NaN	0.50567	1	6646	6646		30.791	13.011	1	10655			14001	1553	8110	8275	11056	11056					-0.012013338132305762
LISSLVKTT	9	Unmodified	_LISSLVKTT_					0	0	0			REV__ENST00000517562.2_1_8:91971179-91972998:-|nuORF	REV__ENST00000517562.2_1_8:91971179-91972998:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.3000501313	2	481.30005	960.585547	1.9764	0.00095123	-2.4494	-0.0011789	-0.47306	-0.00022768	481.29884364049735	19.731	0.072184	19.717	19.693	19.765	-0.014141	1341	67	0.8117308	0.040626824	0.81021136	329.7931	0	16.506042						136	4	2	NaN	NaN	NaN	0.56671	1	7208	7208		6.8632	2.4501	1	16038	+		14002	12579	8111	8276	11057	11057					0.1036779776285357
LISSLVKTT	9	Unmodified						0	0	0			REV__ENST00000517562.2_1_8:91971179-91972998:-|nuORF	REV__ENST00000517562.2_1_8:91971179-91972998:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	481.30005	960.585547	1.9764	0.00095123	-2.4494	-0.0011789	-0.47306	-0.00022768	481.29884364049735	19.731	0.072184	19.717	19.693	19.765	-0.014141	1341	67	0.8117308	0.040626824	0.81021136	329.7931		16.506042	0.0044314	-0.00021109	-0.0026074	NaN	6.8632	136	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16038	+		14003	12579	8111	8276							0.1036779776285357
LISTLAVI	8	Unmodified	_LISTLAVI_					0	0	0		ENST00000490599.1_1_9:99083098-99083179:-|nuORF	ENST00000490599.1_1_9:99083098-99083179:-|nuORF	ENST00000490599.1_1_9:99083098-99083179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.5393316625001	1	829.539332	828.532055	0.98594	0.00081788	-0.52124	-0.00043239	0.4647	0.00038549	829.5381488202939	32.803	0.096542	32.8	32.751	32.848	-0.0031052	390	61	1.3876231	0.03572464	1.3861036	282.523	0	7.2736206						126	5	2	NaN	NaN	NaN	0.15767	1	5010	5010		53.324	0	1	16192			14004	7264	8112	8277	11058	11058					0.11093045050995443
LITDILDTF	9	Unmodified	_LITDILDTF_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5717540028998	1	1050.57175	1049.56448	1.9574	0.0020563	-0.894	-0.00093921	1.0634	0.0011171	1050.5705882960485	35.82	0.21692	35.82	35.747	35.964	0	120	97	1.5476005	0.05662763	1.5476005	314.01007	0	11.489838						424	10	3	NaN	NaN	NaN	3.7692E-08	1	10625	10625		182.61	65.871	1	100400			14005	1449	8113	8278	11059	11059					0.04167787663322997
LITDILDTF	9	Unmodified	_LITDILDTF_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5717540028998	1	1050.57175	1049.56448	1.3348	0.0014023	-0.25401	-0.00026686	1.0808	0.0011355	1050.5710756469468	35.818	0.19272	35.819	35.746	35.939	0.00052643	117	112	1.5493695	0.06548619	1.54785	314.369	0	13.287231						418	9	3	NaN	NaN	NaN	7.355E-12	1	10405	10405		190.26	59.639	1	105420			14006	1449	8113	8278	11060	11060					0.04167787663322997
LITFLDPVF	9	Unmodified	_LITFLDPVF_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.8049683337001	2	532.804968	1063.59538	1.2505	0.00066626	-1.1808	-0.00062914	0.069662	3.7116E-05	532.8041997747172	37.362	0.16831	37.362	37.29	37.458	0	1272	76	0.854179	0.04605466	0.854179	346.56445	0	18.685669						241	8	3	NaN	NaN	NaN	0.056143	1	11296	11296		44.302	5.3845	1	34417			14007	4530	8114	8279	11061	11061					0.06612985768242652
LITGGQGH	8	Unmodified	_LITGGQGH_					0	0	0		ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4155281324001	1	782.415528	781.408252	1.8118	0.0014176	-10.02	-0.0078402	-8.2087	-0.0064226	782.4078955016397	29.112	0.21718	29.112	29.063	29.28	0	537	121	1.2998781	0.071838975	1.2998781	264.9182	0	14.64093						436	10	3	NaN	NaN	NaN	0.76633	1	4507	4507		13.737	2.1886	1	110080			14008	7493	8115	8280	11062	11062					0.008803870033830208
LITGGQGH	8	Unmodified						0	0	0		ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	782.415528	781.408252	1.5296	0.0011968	-9.3864	-0.0073441	-7.8568	-0.0061473	782.4082264665384	29.111	0.19311	29.103	29.055	29.248	-0.0077209	534	100	1.3016734	0.05924499	1.300154	265.2841		12.074249	-0.0042565	0.00031998	0.00013793	NaN	13.737	428	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114600			14009	7493	8115	8280							0.008803870033830208
LITRSLARIC	10	Unmodified	_LITRSLARIC_					0	0	0			REV__ENST00000521659.5_2_17:4858779-4858950:+|nuORF	REV__ENST00000521659.5_2_17:4858779-4858950:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.3448003734502	2	573.3448	1144.67505	0.709	0.0004065	7.2463	0.0041546	7.9553	0.0045611	573.3490697890664	39.093	0.048294	39.093	39.068	39.117	0	1167	70	0.91857195	0.04222405	0.91857195	372.35278	0	17.115967						96	3	2	NaN	NaN	NaN	0.77967	1	14621	14621		0.59723	0.1514	1	10942	+		14010	11729	8116	8281	11063	11063					0.10849729170604405
LIVGCGCF	8	Unmodified	_LIVGCGCF_					0	0	0			REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.3840933489	1	811.384093	810.376817	1.4392	0.0011677	3.8636	0.0031349	5.3028	0.0043026	811.3868489756569	35.699	0.16887	35.699	35.675	35.844	0	450	70	1.3518641	0.041186333	1.3518641	275.34296	0	8.388672						143	8	2	NaN	NaN	NaN	0.83849	1	4898	4898		4.0537	0	1	10918	+		14011	12933	8117	8282	11064	11064					-0.035956453465814775
LIVGCGCF	8	Unmodified	_LIVGCGCF_					0	0	0			REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.3840933489	1	811.384093	810.376817	1.2007	0.00097425	4.9238	0.0039951	6.1245	0.0049694	811.3877818750505	35.698	0.14462	35.698	35.674	35.819	0.00053024	444	64	1.3554435	0.037600994	1.353924	276.072	0	7.6584167						125	7	2	NaN	NaN	NaN	0.81214	1	4799	4799		7.5902	0	1	8557.4	+		14012	12933	8117	8282	11065	11065					-0.035956453465814775
LIVGCGCF	8	Unmodified						0	0	0			REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	811.384093	810.376817	1.4392	0.0011677	3.8636	0.0031349	5.3028	0.0043026	811.3868489756569	35.699	0.16887	35.699	35.675	35.844	0	450	70	1.3518641	0.041186333	1.3518641	275.34296		8.388672	0.00045802	-0.00037422	-0.0010299	NaN	7.5902	143	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10918	+		14013	12933	8117	8282							-0.035956453465814775
LIVGCGCF	8	Unmodified						0	0	0			REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	REV__ENST00000592932.1_1_X:129629199-129629247:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	811.384093	810.376817	1.2007	0.00097425	4.9238	0.0039951	6.1245	0.0049694	811.3877818750505	35.698	0.14462	35.698	35.674	35.819	0.00053024	444	64	1.3554435	0.037600994	1.353924	276.072		7.6584167	-0.00045802	0.000486	0.0010299	NaN	7.5902	125	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8557.4	+		14014	12933	8117	8282							-0.035956453465814775
LIVLSNVLL	9	Unmodified	_LIVLSNVLL_					0	0	0			REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.6499447444002	1	983.649945	982.642668	1.8346	0.0018046	-0.4338	-0.0004267	1.4008	0.0013779	983.6493679602333	34.831	0.21701	34.831	34.782	34.999	0	162	127	1.5228153	0.074481726	1.5228153	309.25403	0	15.125763						531	10	4	NaN	NaN	NaN	0.030391	1	7984	7984		58.599	0	1	165870	+		14015	11781	8118	8283	11066	11066					0.1506526503923169
LIVLSNVLL	9	Unmodified	_LIVLSNVLL_					0	0	0			REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.6499447444002	1	983.649945	982.642668	1.8758	0.0018451	-0.89548	-0.00088084	0.98029	0.00096426	983.6486171969048	34.829	0.26527	34.828	34.78	35.046	-0.0006485	159	121	1.5245869	0.07091987	1.5230675	309.6138	0	14.402435						526	12	4	NaN	NaN	NaN	0.014943	1	7811	7811		78.398	0	1	167520	+		14016	11781	8118	8283	11067	11067					0.1506526503923169
LIVLSNVLL	9	Unmodified						0	0	0			REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	983.649945	982.642668	1.8346	0.0018046	-0.4338	-0.0004267	1.4008	0.0013779	983.6493679602333	34.831	0.21701	34.831	34.782	34.999	0	162	127	1.5228153	0.074481726	1.5228153	309.25403		15.125763	0.0010881	0.00028204	-0.00012607	NaN	78.398	531	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165870	+		14017	11781	8118	8283							0.1506526503923169
LIVLSNVLL	9	Unmodified						0	0	0			REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	REV__ENST00000340080.8_1_7:7625425-7629036:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.649945	982.642668	1.8758	0.0018451	-0.89548	-0.00088084	0.98029	0.00096426	983.6486171969048	34.829	0.26527	34.828	34.78	35.046	-0.0006485	159	121	1.5245869	0.07091987	1.5230675	309.6138		14.402435	-0.0010881	-0.0001721	0.00012607	NaN	78.398	526	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167520	+		14018	11781	8118	8283							0.1506526503923169
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3891994896001	2	626.389199	1250.76385	1.0281	0.00064398	-4.159	-0.0026051	-3.1309	-0.0019612	626.3864422960978	41.209	0.19227	41.209	41.041	41.233	0	1221	79	0.885486	0.04786837	0.885486	358.5785	0	19.384338						388	9	2	NaN	NaN	NaN	0.74794	1	17791	17791		4.3102	1.0985	1	57170	+		14019	9325	8119	8284	11068	11068					0.14849467681892747
LIVSALITFFK	11	Unmodified						0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.389199	1250.76385	1.0281	0.00064398	-4.159	-0.0026051	-3.1309	-0.0019612	626.3864422960978	41.209	0.19227	41.209	41.041	41.233	0	1221	79	0.885486	0.04786837	0.885486	358.5785		19.384338	0.18943	-0.00029617	0.0016797	NaN	4.3102	388	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57170	+		14020	9325	8119	8284							0.14849467681892747
LIVSALITFFK	11	Unmodified						0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.389199	1250.76385	0.87526	0.00054825	-2.4154	-0.001513	-1.5401	-0.0009647	626.8887929530515	40.823	0.12001	40.83	40.734	40.854	0.0074959	1224	34	0.883646	0.02023995	0.88212657	357.83337		8.1961975	-0.18943	0.0018882	-0.0016797	NaN	4.3102	87	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7152.9	+		14021	9325	8119	8284							0.14849467681892747
LIVSGSSS	8	Unmodified	_LIVSGSSS_					0	0	0		nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;ENST00000369140.7_1_1:149902724-149903177:-|nuORF;ENST00000466496.5_1_1:149902724-149908701:-|nuORF	nc|ENSG00000014914|A4FU01-5|MTMR11	nc|ENSG00000014914|A4FU01-5|MTMR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.4039603931001	1	749.40396	748.396684	1.4361	0.0010762	3.1431	0.0023555	4.5793	0.0034317	749.4064024537565	30.8	0.096533	30.794	30.77	30.866	-0.0057545	558	61	1.2873057	0.03593862	1.2857863	262.5555	0	7.3299255						108	5	2	NaN	NaN	NaN	0.84207	1	3951	3951		3.5732	1.9029	1	9186			14022	7212	8120	8285	11069	11069					0.012421451893828817
LIVSGSSS	8	Unmodified						0	0	0		nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;ENST00000369140.7_1_1:149902724-149903177:-|nuORF;ENST00000466496.5_1_1:149902724-149908701:-|nuORF	nc|ENSG00000014914|A4FU01-5|MTMR11	nc|ENSG00000014914|A4FU01-5|MTMR11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.40396	748.396684	0.99047	0.00074226	4.6721	0.0035013	5.6625	0.0042435	749.4074090091831	30.825	0.12065	30.825	30.777	30.897	0	558	46	1.2873057	0.026952505	1.2873057	262.5555		5.497162	0.015495	0.00045651	0.00075972	NaN	3.5732	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8004.1			14023	7212	8120	8285							0.012421451893828817
LIYETKSSWFP	11	Unmodified	_LIYETKSSWFP_					0	0	0			REV__nc|ENSG00000063127|Q9GZN6-2|SLC6A16	REV__nc|ENSG00000063127|Q9GZN6-2|SLC6A16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.8531781240499	2	685.853178	1369.6918	1.6256	0.0011149	-7.3996	-0.005075	-5.774	-0.0039601	685.8468989911112	24.864	0.16887	24.851	24.707	24.875	-0.012392	1044	31	0.99369496	0.018282235	0.9921755	402.0161	0	7.396393						85	8	2	NaN	NaN	NaN	0.6085	1	18870	18870		13.463	1.4144	1	8363.4	+		14024	8524	8121	8286	11070	11070					0.021745085374959672
LIYKWLLF	8	Unmodified	_LIYKWLLF_					0	0	0		ENST00000462710.5_1_1:24969817-24973316:+|nuORF	ENST00000462710.5_1_1:24969817-24973316:+|nuORF	ENST00000462710.5_1_1:24969817-24973316:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.3336959834	2	548.333696	1094.65284	1.2025	0.00065939	-2.9612	-0.0016237	-1.7587	-0.00096435	548.3319796354004	36.974	0.12013	36.976	36.928	37.048	0.0022507	1233	52	0.87812483	0.03128332	0.8766054	356.15073	0	12.687927						138	6	3	NaN	NaN	NaN	0.77489	1	12298	12298		12.588	0	1	9646.1			14025	7087	8122	8287	11071	11071					0.1092987276445001
LIYLILICTM	10	Unmodified	_LIYLILICTM_					0	0	0		tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3450887991501	2	598.345089	1194.67562	0.99374	0.0005946	-7.8646	-0.0047058	-6.8709	-0.0041112	598.8430939694941	30.535	0.19308	30.535	30.487	30.68	0	1125	49	0.9442611	0.029340029	0.9442611	382.57547	0	11.887329						155	9	2	NaN	NaN	NaN	0.26902	1	16308	16308		29.598	1.103	1	21146			14026	13957	8123	8288	11072	11072					0.08607387775418829
LIYLILICTM	10	Unmodified						0	0	0		tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.345089	1194.67562	1.9245	0.0011515	-10.85	-0.0064921	-8.9255	-0.0053406	598.3381937123078	30.752	0.02408	30.746	30.746	30.77	-0.0057545	1119	25	0.9479278	0.014666855	0.94640833	384.0611		5.942383	0.1052	-0.0015083	0.0010736	NaN	29.598	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2117.8			14027	13957	8123	8288							0.08607387775418829
LKAFRYTLKL	10	Unmodified	_LKAFRYTLKL_					0	0	0		ENST00000483571.5_1_14:60582139-60592559:+|nuORF;ENSG00000126773|ENST00000406854|PCNX4	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1252.777604874	1	1252.7776	1251.77033	2.0681	0.0025908	3.2153	0.0040281	5.2834	0.0066189	1253.7837556971492	41.594	0.2165	41.594	41.594	41.811	0	69	82	1.5776473	0.047691107	1.5776473	319.43494	0	9.6562805						296	10	3	NaN	NaN	NaN	0.77967	1	17825	17825		0.59723	0	1	51843			14028	2513	8124	8289	11073	11073					0.1545140563325731
LKAFRYTLKL	10	Unmodified						0	0	0		ENST00000483571.5_1_14:60582139-60592559:+|nuORF;ENSG00000126773|ENST00000406854|PCNX4	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1252.7776	1251.77033	1.7245	0.0021604	4.3261	0.0054197	6.0506	0.00758	1252.7840279898903	41.857	0.024021	41.866	41.866	41.89	0.0089951	72	40	1.5758814	0.022959948	1.5743619	319.07736		4.648834	0.13602	0.0012034	-0.0016427	NaN	0.59723	43	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3369.2			14029	2513	8124	8289							0.1545140563325731
LKAGCPCS	8	Unmodified	_LKAGCPCS_					0	0	0		ENST00000254616.10_1_11:6503555-6503747:+|nuORF	ENST00000254616.10_1_11:6503555-6503747:+|nuORF	ENST00000254616.10_1_11:6503555-6503747:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.68294167324996	2	389.682942	777.35133	1.1649	0.00045395	6.9849	0.0027219	8.1499	0.0031759	389.68607514089655	27.157	0.28956	27.157	27.084	27.374	0	1611	40	0.64460784	0.024256885	0.64460784	262.76288	0	9.887878						259	13	3	NaN	NaN	NaN	0.84727	1	4455	4455		1.2418	0.84618	1	33413			14030	6285	8125	8290	11074	11074					-0.04625119869012906
LKAKGAGK	8	Unmodified	_LKAKGAGK_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.5039492092002	1	772.503949	771.496673	-0.1483	-0.00011456	9.074	0.0070097	8.9257	0.0068951	772.5104738029466	54.522	0.14464	54.521	54.497	54.642	-0.0006218	384	55	1.3911947	0.032141924	1.3896753	283.59152	0	6.552063						133	7	3	NaN	NaN	NaN	0.84945	1	4302	4302		0	0	1	11589	+		14031	9450	8126	8291	11075	11075					0.10178427313860539
LKAKGAGK	8	Unmodified						0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	772.503949	771.496673	1.7728	0.0013695	8.2813	0.0063973	10.054	0.0077668	772.5102527643533	54.524	0.096409	54.524	54.5	54.596	0	384	55	1.3911947	0.032148838	1.3911947	283.59152		6.553467	0.0013694	-0.0003268	0.00075972	NaN	0	137	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14314	+		14032	9450	8126	8291							0.10178427313860539
LKAKGAGK	8	Unmodified						0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	772.503949	771.496673	-0.1483	-0.00011456	9.074	0.0070097	8.9257	0.0068951	772.5104738029466	54.522	0.14464	54.521	54.497	54.642	-0.0006218	384	55	1.3911947	0.032141924	1.3896753	283.59152		6.552063	-0.0013694	0.00028559	-0.00075972	NaN	0	133	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11589	+		14033	9450	8126	8291							0.10178427313860539
LKAKLIKKKGT	11	Unmodified	_LKAKLIKKKGT_					0	0	0		ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.42919031735	2	614.42919	1226.84383	1.0572	0.00064955	-8.7391	-0.0053696	-7.6819	-0.00472	614.4245007740942	55.725	0.072357	55.725	55.701	55.773	0	1122	40	0.9460945	0.023834884	0.9460945	383.20355	0	9.654022						96	4	3	NaN	NaN	NaN	0.78084	1	17164	17164		0.094767	0.094767	1	10938			14034	3907	8127	8292	11076	11076					0.23947954075742928
LKAKLIKKKGT	11	Unmodified						0	0	0		ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.42919	1226.84383	-0.27971	-0.00017186	-6.0809	-0.0037363	-6.3606	-0.0039081	614.9261689183311	55.698	0.072338	55.698	55.698	55.77	-0.00059128	1122	31	0.9460945	0.018333495	0.9445751	383.20352		7.4257507	-0.013463	0.0024607	-0.00075972	NaN	0.094767	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3644.4			14035	3907	8127	8292							0.23947954075742928
LKDNEAERK	9	Unmodified	_LKDNEAERK_					0	0	0			REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7961945614001	2	551.796195	1101.57784	0.62992	0.00034759	4.1207	0.0022738	4.7506	0.0026214	551.7980022831211	31.67	0.14484	31.67	31.646	31.79	0	1221	82	0.885486	0.049701393	0.885486	359.10815	0	20.156342						197	7	3	NaN	NaN	NaN	0.6532	1	12913	12913		3.2116	0.42642	1	14722	+		14036	9342	8128	8293	11077	11077					0.031110384952853565
LKDNEAERK	9	Unmodified						0	0	0			REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	REV__ENST00000480440.5_1_1:86847891-86851212:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.796195	1101.57784	0.62992	0.00034759	4.1207	0.0022738	4.7506	0.0026214	551.7980022831211	31.67	0.14484	31.67	31.646	31.79	0	1221	82	0.885486	0.049701393	0.885486	359.10815		20.156342	0	0	0	NaN	3.2116	197	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14722	+		14037	9342	8128	8293							0.031110384952853565
LKEAYTLKL	9	Unmodified	_LKEAYTLKL_					0	0	0			REV__nc|ENSG00000151914|Q03001-8|DST	REV__nc|ENSG00000151914|Q03001-8|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.2217419863667	3	360.221742	1077.6434	1.8935	0.00068208	-1.5573	-0.00056096	0.33623	0.00012112	360.22123535448543	19.876	0.16846	19.861	19.813	19.982	-0.014141	1437	52	0.7524962	0.03152126	0.75097674	457.8816	0	19.180176						297	8	5	NaN	NaN	NaN	0.048656	1	11580	11580		35.523	0	1	82558	+		14038	10041	8129	8294	11078	11078					0.10768059688280118
LKEKTMRL	8	Unmodified	_LKEKTMRL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.80751941015006	2	509.807519	1017.60049	1.8811	0.000959	-8.7692	-0.0044706	-6.8881	-0.0035116	510.30447231932567	29.763	0.12066	29.763	29.642	29.763	0	1272	133	0.854179	0.08099055	0.854179	346.76468	0	32.87912						333	6	2	NaN	NaN	NaN	0.84562	1	9289	9289		2.1763	0.47414	1	48715	+		14039	9503	8130	8295	11079	11079					0.09238966359214373
LKEKTMRL	8	Unmodified						0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.807519	1017.60049	1.8811	0.000959	-8.7692	-0.0044706	-6.8881	-0.0035116	510.30447231932567	29.763	0.12066	29.763	29.642	29.763	0	1272	133	0.854179	0.08099055	0.854179	346.76468		32.87912	0.0039562	-0.00014386	-0.002926	NaN	2.1763	333	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48715	+		14040	9503	8130	8295							0.09238966359214373
LKEYLGFEYP	10	Unmodified	_LKEYLGFEYP_					0	0	0		ENSG00000174236|ENST00000310791|REP15	ENSG00000174236|ENST00000310791|REP15	ENSG00000174236|ENST00000310791|REP15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8213466794001	2	629.821347	1257.62814	1.8106	0.0011404	2.0136	0.0012682	3.8242	0.0024085	629.8208972619952	25.226	0.14478	25.226	25.129	25.274	0	1131	118	0.94059354	0.07153559	0.94059354	380.87164	0	28.966705						271	7	3	NaN	NaN	NaN	0.58645	1	17952	17952		15.822	2.3589	1	41151			14041	4934	8131	8296	11080	11080					0.009631481004362286
LKEYLGLFDSF	11	Unmodified	_LKEYLGLFDSF_					0	0	0			REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3477286054001	2	666.347729	1330.6809	1.3269	0.00088421	-8.6129	-0.0057392	-7.2859	-0.004855	666.3419262399868	35.938	0.19291	35.94	35.843	36.036	0.0011024	1080	61	0.9717421	0.036619663	0.97022265	393.24985	0	14.8194275						232	9	3	NaN	NaN	NaN	0.40559	1	18405	18405		21.85	0.079341	1	28265	+		14042	8441	8132	8297	11081	11081					0.02879106163254619
LKEYLGLFDSF	11	Unmodified						0	0	0			REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.347729	1330.6809	1.5034	0.0010018	-9.7949	-0.0065268	-8.2916	-0.0055251	666.3408466760739	35.964	0.048168	35.964	35.964	36.012	0	1077	37	0.9735726	0.021967113	0.9735726	393.99063		8.88974	0.012299	-0.0011671	0.001675	NaN	21.85	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3423.9	+		14043	8441	8132	8297							0.02879106163254619
LKEYLGLFDSF	11	Unmodified						0	0	0			REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	REV__ENST00000560260.5_1_15:64404820-64422215:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	666.347729	1330.6809	1.3269	0.00088421	-8.6129	-0.0057392	-7.2859	-0.004855	666.3419262399868	35.938	0.19291	35.94	35.843	36.036	0.0011024	1080	61	0.9717421	0.036619663	0.97022265	393.24985		14.8194275	-0.012299	0.00040827	-0.001675	NaN	21.85	232	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28265	+		14044	8441	8132	8297							0.02879106163254619
LKFDYSLGFN	10	Unmodified	_LKFDYSLGFN_					0	0	0			REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	REV__tr|U7ST31|U7ST31_FUSNUOutermembraneproteinbeta-barreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01263PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3058637907001	2	602.305864	1202.59717	0.47158	0.00028403	-1.2368	-0.00074493	-0.76523	-0.0004609	602.3057334830318	31.476	0.28956	31.471	31.326	31.616	-0.0044155	1164	67	0.9204082	0.040403485	0.91888875	372.8832	0	16.368591						521	13	4	NaN	NaN	NaN	0.71113	1	15896	15896		12.57	6.3195	1	86829	+		14045	13484	8133	8298	11082	11082					0.0039799478618078865
LKFVMDGGVL	10	Unmodified	_LKFVMDGGVL_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8019027160001	2	539.801903	1077.58925	1.4565	0.00078622	-9.2055	-0.0049691	-7.749	-0.0041829	539.7970702848708	21.2	0.072296	21.2	21.175	21.248	0	1257	52	0.86339295	0.031320512	0.86339295	350.2447	0	12.705505						85	4	2	NaN	NaN	NaN	0.65442	1	11867	11867		11.17	1.4243	1	11754			14046	481	8134	8299	11083	11083					0.05356144265056173
LKFVMDGGVL	10	Unmodified						0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.801903	1077.58925	1.1761	0.00063487	-9.1421	-0.0049349	-7.9659	-0.0043	539.7975247427778	21.224	0.096306	21.21	21.186	21.282	-0.014004	1257	46	0.86339295	0.027635753	0.8618735	350.2447		11.210724	0.0051711	4.4483E-05	-0.00075972	NaN	11.17	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14058			14047	481	8134	8299							0.05356144265056173
LKFVNLNF	8	Unmodified	_LKFVNLNF_					0	0	0		ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.7896526205	2	497.789653	993.564752	1.3861	0.00068997	-2.2056	-0.0010979	-0.81952	-0.00040795	497.7883799425516	27.181	0.12064	27.181	27.157	27.277	0	1275	43	0.85233563	0.025811553	0.85233563	346.12796	0	10.481873						145	6	3	NaN	NaN	NaN	0.75561	1	8351	8351		15.175	2.1725	1	19730			14048	7776	8135	8300	11084	11084					0.06771252173848552
LKFVNLNF	8	Unmodified	_LKFVNLNF_					0	0	0		ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	ENST00000603544.5_2_14:35649921-35735939:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.7896526205	2	497.789653	993.564752	0.81126	0.00040384	-1.776	-0.00088405	-0.96469	-0.00048021	497.78917259256906	27.228	0.1448	27.218	27.194	27.339	-0.010124	1278	40	0.85049206	0.02396655	0.8489726	345.3793	0	9.7326355						145	7	4	NaN	NaN	NaN	0.49126	1	8187	8187		31.561	3.7722	1	17822			14049	7776	8135	8300	11085	11085					0.06771252173848552
LKGGAHPG	8	Unmodified	_LKGGAHPG_					0	0	0		LOXL3|p.E317D|1|0.42|ENSG00000115318|chr2:74536433-74536433|C/A|missense_variant;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	LOXL3|p.E317D|1|0.42|ENSG00000115318|chr2:74536433-74536433|C/A|missense_variant	LOXL3|p.E317D|1|0.42|ENSG00000115318|chr2:74536433-74536433|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.4100488240001	1	736.410049	735.402772	-0.057631	-4.244E-05	-9.2158	-0.0067866	-9.2734	-0.006829	736.4027010985288	54.497	0.048023	54.497	54.473	54.521	-0.00061798	567	64	1.2819146	0.0377537	1.2803952	261.53912	0	7.702606						63	3	2	NaN	NaN	NaN	0.84727	1	3756	3756		1.2418	0	1	6783.2			14050	2017	8136	8301	11086	11086					0.024487082115683734
LKGGGLCR	8	Unmodified	_LKGGGLCR_					0	0	0			REV__ENST00000468115.1_1_7:1523019-1523223:-|nuORF	REV__ENST00000468115.1_1_7:1523019-1523223:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.4556188081	1	803.455619	802.448342	2.0265	0.0016282	-0.97546	-0.00078374	1.051	0.00084444	803.4546197081413	48.235	0.14389	48.235	48.187	48.331	0	375	67	1.3965509	0.03928876	1.3965509	284.49146	0	8.00354						233	7	3	NaN	NaN	NaN	0.84727	1	4780	4780		1.2418	0.31598	1	27501	+		14051	12313	8137	8302	11087	11087					0.039216104022898435
LKGGGLCR	8	Unmodified						0	0	0			REV__ENST00000468115.1_1_7:1523019-1523223:-|nuORF	REV__ENST00000468115.1_1_7:1523019-1523223:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	803.455619	802.448342	2.0265	0.0016282	-0.97546	-0.00078374	1.051	0.00084444	803.4546197081413	48.235	0.14389	48.235	48.187	48.331	0	375	67	1.3965509	0.03928876	1.3965509	284.49146		8.00354	-0.073568	-0.00054881	0.0016523	NaN	1.2418	233	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27501	+		14052	12313	8137	8302							0.039216104022898435
LKGKGDPG	8	Unmodified	_LKGKGDPG_					0	0	0			REV__ENSG00000177374|ENST00000619757|HIC1	REV__ENSG00000177374|ENST00000619757|HIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.22160284505003	2	386.221603	770.428653	1.2168	0.00046995	-4.4382	-0.0017141	-3.2214	-0.0012442	386.22001033815616	21.224	0.072277	21.224	21.151	21.224	0	1443	55	0.7487872	0.033373654	0.7487872	305.27725	0	13.606293						77	4	2	NaN	NaN	NaN	0.8439	1	4362	4362		3.1533	0	1	7447	+		14053	10765	8138	8303	11088	11088					0.034255576631949225
LKGLPKGH	8	Unmodified	_LKGLPKGH_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.26888738865006	2	425.268887	848.523222	-0.61814	-0.00026288	3.2424	0.0013789	2.6243	0.001116	425.2700003467111	56.035	0.047977	56.034	56.01	56.058	-0.00059128	1278	40	0.85049206	0.02396655	0.8489726	346.18427	0	9.755341						59	3	2	NaN	NaN	NaN	0.84887	1	5236	5236		0.32989	0	1	9074.6	+		14054	11022	8139	8304	11089	11089					0.09290116205181675
LKGMNTVLTW	10	Unmodified	_LKGMNTVLTW_					0	0	0		ENST00000523863.5_1_8:87386279-87399237:+|nuORF	ENST00000523863.5_1_8:87386279-87399237:+|nuORF	ENST00000523863.5_1_8:87386279-87399237:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.81808409645	2	581.818084	1161.62162	1.9158	0.0011146	-4.5952	-0.0026736	-2.6794	-0.0015589	581.8156635740643	27.567	0.19304	27.567	27.519	27.712	0	1203	103	0.8965218	0.062556505	0.8965218	363.35147	0	25.353546						478	9	4	NaN	NaN	NaN	0.44412	1	15212	15212		21.771	0	1	114660			14055	7413	8140	8305	11090	11090					0.04726931668051293
LKHESDAGFA	10	Unmodified	_LKHESDAGFA_					0	0	0			REV__ENST00000504456.1_1_5:102343300-102364769:+|nuORF	REV__ENST00000504456.1_1_5:102343300-102364769:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5214497668999	1	1074.52145	1073.51417	0.88943	0.00095571	-7.4313	-0.0079851	-6.5419	-0.0070294	1075.5152526111638	33.383	0.09655	33.383	33.383	33.48	0	141	103	1.5352125	0.06021154	1.5352125	311.4064	0	12.21347						213	5	2	NaN	NaN	NaN	0.62092	1	11699	11699		13.463	2.8581	1	19241	+		14056	12531	8141	8306	11091	11091					-0.019643219418185254
LKHQPGGG	8	Unmodified	_LKHQPGGG_					0	0	0		ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-3|MAPT;ENST00000576518.1_1_17:44055640-44101534:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	ENST00000570299.5_1_17:44039703-44096001:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	793.4315125476002	1	793.431513	792.424236	1.916	0.0015202	1.4937	0.0011851	3.4096	0.0027053	793.4330073993816	56.013	0.047939	56.013	55.989	56.037	0	534	61	1.3016734	0.03590405	1.3016734	265.2204	0	7.3155823						113	3	3	NaN	NaN	NaN	0.84887	1	4656	4656		0.32989	0	1	13005			14057	5489	8142	8307	11092	11092					0.01972093240283357
LKHSNVWRK	9	Unmodified	_LKHSNVWRK_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3409066263	2	584.340907	1166.66726	1.7371	0.0010151	-0.62836	-0.00036718	1.1087	0.00064788	584.3406024270006	23.899	0.21699	23.886	23.813	24.03	-0.01305	1158	52	0.92408	0.031205654	0.9225606	374.50153	0	12.6467285						369	10	4	NaN	NaN	NaN	0.27236	1	14849	14849		17.97	0.77127	1	78260			14058	546	8143	8308	11093	11093					0.09059337965300074
LKHSNVWRK	9	Unmodified						0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.340907	1166.66726	1.8182	0.0010624	-6.0192	-0.0035173	-4.2011	-0.0024548	584.3388762141025	23.971	0.048279	23.971	23.947	23.995	0	1173	70	0.91489893	0.04222858	0.91489893	370.78073		17.113983	0.042792	-0.0052482	-0.0038308	NaN	17.97	106	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15345			14059	546	8143	8308							0.09059337965300074
LKIDPDLGY	9	Unmodified	_LKIDPDLGY_					0	0	0		FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant;ENSG00000104290|ENST00000240093|FZD3	FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.28185737815	2	517.281857	1032.54916	1.6519	0.00085449	-0.010374	-5.3664E-06	1.6415	0.00084912	517.281660881077	25.322	0.096491	25.31	25.262	25.358	-0.012011	1269	70	0.8560222	0.04238403	0.85450274	347.44574	0	17.202972						173	5	3	NaN	NaN	NaN	0.46215	1	9686	9686		11.17	0.56537	1	23218			14060	1465	8144	8309	11094	11094					0.034189208661246084
LKIELSQVTCR	11	Unmodified	_LKIELSQVTCR_					0	0	0			REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF	REV__ENST00000396959.2_1_3:12829056-12829584:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3659297460501	2	645.36593	1288.71731	1.8899	0.0012197	-6.3127	-0.004074	-4.4228	-0.0028543	645.3633240510687	39.066	0.26538	39.071	39.023	39.288	0.0046806	1197	109	0.9001988	0.06624347	0.8986794	364.41922	0	26.816742						718	12	4	NaN	NaN	NaN	0.76654	1	17748	17748		2.5994	0.49688	1	107400	+		14061	12014	8145	8310	11095	11095					0.08449659788311692
LKKCEAIMHA	10	Unmodified	_LKKCEAIMHA_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-4|DLC1	REV__nc|ENSG00000164741|Q96QB1-4|DLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.30428661695	2	572.304287	1142.59402	1.4718	0.00084229	-3.987	-0.0022818	-2.5152	-0.0014395	572.3023244511692	26.964	0.096479	26.964	26.94	27.036	0	1206	67	0.894683	0.040447116	0.894683	362.67706	0	16.396027						271	5	3	NaN	NaN	NaN	0.14619	1	14551	14551		40.154	10.118	1	58486	+		14062	10351	8146	8311	11096	11096					0.02842705136163204
LKKEHLVG	8	Unmodified	_LKKEHLVG_					0	0	0		ENST00000503391.5_1_4:84182841-84188909:-|nuORF	ENST00000503391.5_1_4:84182841-84188909:-|nuORF	ENST00000503391.5_1_4:84182841-84188909:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5672777475	1	923.567278	922.560001	-0.3339	-0.00030837	-0.79877	-0.00073771	-1.1327	-0.0010461	923.5657282209033	56.803	0.024044	56.802	56.778	56.802	-0.00056458	333	52	1.4215236	0.030296564	1.4200041	288.94354	0	6.1581726						57	2	2	NaN	NaN	NaN	0.84876	1	6331	6331		0.39566	0	1	5593.4			14063	7315	8147	8312	11097	11097					0.09562368031083679
LKKGPTCL	8	Unmodified	_LKKGPTCL_					0	0	0		ENST00000461547.5_1_20:56191111-56191654:-|nuORF	ENST00000461547.5_1_20:56191111-56191654:-|nuORF	ENST00000461547.5_1_20:56191111-56191654:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.5069856765998	1	859.506986	858.499709	-0.52666	-0.00045267	0.38374	0.00032983	-0.14292	-0.00012284	859.5065376135985	56.059	0.096046	56.058	56.034	56.13	-0.00056458	405	73	1.3786905	0.042901635	1.377171	280.5444	0	8.729889						162	5	4	NaN	NaN	NaN	0.84945	1	5387	5387		0	0	1	28742			14064	7079	8148	8313	11098	11098					0.06479934376318397
LKKGPTCL	8	Unmodified						0	0	0		ENST00000461547.5_1_20:56191111-56191654:-|nuORF	ENST00000461547.5_1_20:56191111-56191654:-|nuORF	ENST00000461547.5_1_20:56191111-56191654:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	859.506986	858.499709	1.9899	0.0017103	-2.5932	-0.0022289	-0.60335	-0.00051858	859.5044679609823	56.061	0.07206	56.061	56.037	56.109	0	411	58	1.3751161	0.03395474	1.3751161	279.81708		6.9093018	0.0013401	-0.0009708	-0.0010275	NaN	0	137	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26981			14065	7079	8148	8313							0.06479934376318397
LKKKKKKKKKA	11	Unmodified	_LKKKKKKKKKA_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.5004812735	2	678.500481	1354.98641	1.634	0.0011087	-4.9167	-0.003336	-3.2827	-0.0022273	678.9998571224593	16.446	0.16778	16.446	16.35	16.518	0	1149	28	0.92958635	0.016517103	0.92958635	376.12067	0	6.683014						65	8	2	NaN	NaN	NaN	0.78138	1	19607	19607		0	0	1	6129.2	+		14066	10889	8149	8314	11099	11099					0.323115865377531
LKKLHLETWA	10	Unmodified	_LKKLHLETWA_					0	0	0		nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	nc|ENSG00000180638|Q86VL8-2|SLC47A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.58004074556675	3	413.580041	1237.71829	1.6005	0.00066193	-2.6555	-0.0010983	-1.055	-0.00043633	413.5788949886778	21.754	0.14442	21.754	21.705	21.85	0	1458	34	0.7395112	0.02041161	0.7395112	449.24643	0	12.399872						84	7	2	NaN	NaN	NaN	0.77879	1	17476	17476		0.81135	0	1	6933.6			14067	5201	8150	8315	11100	11100					0.1089424221952413
LKKLMKSS	8	Unmodified	_LKKLMKSS_					0	0	0			REV__ENST00000484040.1_1_2:213872086-213878776:-|nuORF	REV__ENST00000484040.1_1_2:213872086-213878776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5753995928001	1	934.5754	933.568123	1.2429	0.0011616	6.6378	0.0062035	7.8807	0.0073651	934.5824609020434	39.694	0.38536	39.694	39.67	40.056	0	891	94	1.086679	0.056349754	1.086679	220.84361	0	11.4518585						899	17	3	NaN	NaN	NaN	0.84207	1	6704	6704		3.5732	2.1337	1	256390	+		14068	12406	8151	8316	11101	11101					0.09868178956196516
LKKLMKSS	8	Unmodified						0	0	0			REV__ENST00000484040.1_1_2:213872086-213878776:-|nuORF	REV__ENST00000484040.1_1_2:213872086-213878776:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.5754	933.568123	1.2429	0.0011616	6.6378	0.0062035	7.8807	0.0073651	934.5824609020434	39.694	0.38536	39.694	39.67	40.056	0	891	94	1.086679	0.056349754	1.086679	220.84361		11.4518585	0.010428	-0.00039745	-0.00014934	NaN	3.5732	899	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256390	+		14069	12406	8151	8316							0.09868178956196516
LKKSLAEEE	9	Unmodified	_LKKSLAEEE_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.790046551	2	523.790047	1045.56554	-0.43861	-0.00022974	6.2431	0.0032701	5.8045	0.0030403	523.7930496768552	55.194	0.072227	55.193	55.193	55.266	-0.0006218	1272	52	0.854179	0.031330705	0.8526596	346.6408	0	12.714539						126	4	3	NaN	NaN	NaN	0.66196	1	10249	10249		2.4615	0.28518	1	12563	+		14070	8791	8152	8317	11102	11102					0.04458002032242803
LKLLGALG	8	Unmodified	_LKLLGALG_					0	0	0			REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.5291013272001	1	784.529101	783.521825	-0.038016	-2.9825E-05	3.8058	0.0029858	3.7678	0.0029559	784.532490396826	56.371	0.11983	56.37	56.346	56.466	-0.00056458	387	43	1.389409	0.025004506	1.3878895	283.15155	0	5.095764						82	6	2	NaN	NaN	NaN	0.84692	1	4460	4460		1.4396	0	1	8101.7	+		14071	12717	8153	8318	11103	11103					0.12140482116421936
LKLLGALG	8	Unmodified						0	0	0			REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	784.529101	783.521825	1.8971	0.0014883	4.3015	0.0033746	6.1986	0.004863	784.5320739577896	56.373	0.095928	56.373	56.349	56.445	0	393	37	1.3858368	0.021434784	1.3858368	282.42358		4.3682556	0.001275	0.000219	-0.0010263	NaN	1.4396	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5925.9	+		14072	12717	8153	8318							0.12140482116421936
LKLLGALG	8	Unmodified						0	0	0			REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	REV__ENST00000552683.5_1_16:707859-713132:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	784.529101	783.521825	-0.038016	-2.9825E-05	3.8058	0.0029858	3.7678	0.0029559	784.532490396826	56.371	0.11983	56.37	56.346	56.466	-0.00056458	387	43	1.389409	0.025004506	1.3878895	283.15155		5.095764	-0.001275	-0.00016988	0.0010263	NaN	1.4396	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8101.7	+		14073	12717	8153	8318							0.12140482116421936
LKLMPKTK	8	Unmodified	_LKLMPKTK_					0	0	0			REV__ENST00000296786.7_1_5:158712307-158712427:+|nuORF	REV__ENST00000296786.7_1_5:158712307-158712427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.6117850991002	1	958.611785	957.604509	-0.21751	-0.00020851	-0.8753	-0.00083907	-1.0928	-0.0010476	958.6105684594415	53.672	0.10551	53.671	53.647	53.753	-0.00059128	693	43	1.2062578	0.025275707	1.2047384	245.05594	0	5.1348267						86	4	2	NaN	NaN	NaN	0.84727	1	7146	7146		1.2418	0	1	18487	+		14074	11636	8154	8319	11104	11104					0.12401055852922127
LKLMPKTK	8	Unmodified						0	0	0			REV__ENST00000296786.7_1_5:158712307-158712427:+|nuORF	REV__ENST00000296786.7_1_5:158712307-158712427:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	958.611785	957.604509	-0.21751	-0.00020851	-0.8753	-0.00083907	-1.0928	-0.0010476	958.6105684594415	53.672	0.10551	53.671	53.647	53.753	-0.00059128	693	43	1.2062578	0.025275707	1.2047384	245.05594		5.1348267	0.010853	0.00032427	0.00014303	NaN	1.2418	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18487	+		14075	11636	8154	8319							0.12401055852922127
LKMSEHMQNME	11	Unmodified	_LKMSEHMQNME_					0	0	0			REV__GNAI3|p.R242Q|1|0.38|ENSG00000065135|chr1:109586733-109586733|G/A|missense_variant	REV__GNAI3|p.R242Q|1|0.38|ENSG00000065135|chr1:109586733-109586733|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.8701687753667	3	459.870169	1376.58868	1.7465	0.00080318	-6.9716	-0.003206	-5.2251	-0.0024029	460.20068691991156	28.725	0.07239	28.716	28.716	28.789	-0.0083504	1413	31	0.7673241	0.018528879	0.76580465	465.62424	0	11.243591						36	4	2	NaN	NaN	NaN	0.7808	1	18925	18925		0.10152	0.0067498	1	2358.7	+		14076	12998	8155	8320	11105	11105					-0.08455386508580887
LKNEVGELLLK	11	Unmodified	_LKNEVGELLLK_					0	0	0			REV__nc|ENSG00000151726|P33121-2|ACSL1	REV__nc|ENSG00000151726|P33121-2|ACSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.3846454279501	2	628.384645	1254.75474	0.79513	0.00049965	-3.5158	-0.0022093	-2.7207	-0.0017096	628.3827915157826	40.919	0.12015	40.926	40.83	40.95	0.0074959	1200	43	0.89836043	0.025741875	0.896841	363.77936	0	10.423828						107	6	3	NaN	NaN	NaN	0.74155	1	17130	17130		4.7291	0	1	11782	+		14077	10034	8156	8321	11106	11106					0.1375507432555878
LKPEEEVAIG	10	Unmodified	_LKPEEEVAIG_					0	0	0			REV__ENST00000546954.1_1_12:120881792-120882053:-|nuORF	REV__ENST00000546954.1_1_12:120881792-120882053:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7978715831	2	542.797872	1083.58119	1.7403	0.00094466	-4.2136	-0.0022871	-2.4733	-0.0013425	542.7957219911387	21.922	0.14464	21.922	21.874	22.019	0	1230	58	0.8799654	0.034978867	0.8799654	356.94257	0	14.188568						203	7	3	NaN	NaN	NaN	0.60686	1	12131	12131		14.425	0.38343	1	32566	+		14078	12721	8157	8322	11107	11107					0.042742885492771165
LKRIYYKMKKD	11	Unmodified	_LKRIYYKMKKD_					0	0	0			REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF	REV__ENST00000550219.1_1_9:131710355-131710682:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.434146697	2	743.434147	1484.85374	2.727	0.0020274	-2.6668	-0.0019826	0.060285	4.4818E-05	743.9345578822558	24.55	0.024115	24.538	24.538	24.562	-0.012394	954	25	1.0484532	0.01458025	1.0469338	423.84058	0	5.8940735						36	2	3	NaN	NaN	NaN	0.77843	1	19528	19528		0.51604	0.51604	1	2009.8	+		14079	12735	8158	8323	11108	11108					0.13070774018797238
LKRKSKKDDGD	11	Unmodified	_LKRKSKKDDGD_					0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.36223296415	2	645.362233	1288.70991	1.2332	0.00079586	0.37732	0.00024351	1.6105	0.0010394	645.3635892503738	39.093	0.2654	39.093	39.044	39.31	0	1200	112	0.89836043	0.06809461	0.89836043	363.675	0	27.566101						786	12	4	NaN	NaN	NaN	0.76654	1	18577	18577		2.5994	0.67481	1	119640			14080	520	8159	8324	11109	11109					0.07710643512223214
LKRKSKKDDGD	11	Unmodified						0	0	0		nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	nc|ENSG00000038358|Q6P2E9-2|EDC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	645.362233	1288.70991	1.8899	0.0012197	-0.58448	-0.0003772	1.3054	0.00084247	645.3633240510687	39.066	0.26538	39.071	39.023	39.288	0.0046806	1197	109	0.9001988	0.06624347	0.8986794	364.41922		26.816742	-0.010748	-0.00070669	0.00015948	NaN	2.5994	718	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107400			14081	520	8159	8324							0.07710643512223214
LKRNNCGKALD	11	Unmodified	_LKRNNCGKALD_					0	0	0		ENST00000591043.1_1_19:13008418-13010352:+|nuORF;ENST00000590530.5_1_19:13002704-13010352:+|nuORF;nc|ENSG00000105607|Q92947-2|GCDH;ENSG00000105607|ENST00000222214|GCDH	ENST00000591043.1_1_19:13008418-13010352:+|nuORF	ENST00000591043.1_1_19:13008418-13010352:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2240396753333	3	411.22404	1230.65029	1.4258	0.00058631	-1.2618	-0.00051887	0.164	6.744E-05	411.2232164788215	14.405	0.07199	14.405	14.357	14.429	0	1419	25	0.76361835	0.014826298	0.76361835	463.92062	0	9.007416						47	4	2	NaN	NaN	NaN	0.77843	1	17279	17279		0.11792	0.016398	1	3740.1			14082	1550	8160	8325	11110	11110					0.044190492971893036
LKRNNCGKALD	11	Unmodified						0	0	0		ENST00000591043.1_1_19:13008418-13010352:+|nuORF;ENST00000590530.5_1_19:13002704-13010352:+|nuORF;nc|ENSG00000105607|Q92947-2|GCDH;ENSG00000105607|ENST00000222214|GCDH	ENST00000591043.1_1_19:13008418-13010352:+|nuORF	ENST00000591043.1_1_19:13008418-13010352:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	411.22404	1230.65029	2.2059	0.00090711	-6.7049	-0.0027572	-4.499	-0.0018501	411.2211859153057	14.452	0.095818	14.441	14.417	14.513	-0.011218	1419	25	0.76361835	0.014826298	0.7620989	463.92065		9.007416	0.017822	-0.0026191	-0.00075972	NaN	0.11792	37	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2161.7			14083	1550	8160	8325							0.044190492971893036
LKRQERERR	9	Unmodified	_LKRQERERR_					0	0	0			REV__ENST00000572330.5_1_17:4736842-4793277:+|nuORF	REV__ENST00000572330.5_1_17:4736842-4793277:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.8761762169	2	635.876176	1269.7378	1.3812	0.00087828	-10.43	-0.006632	-9.0484	-0.0057537	636.369976500883	37.504	0.12048	37.506	37.458	37.579	0.0028229	1212	46	0.8910048	0.02758503	0.88948536	360.7545	0	11.168762						107	6	2	NaN	NaN	NaN	0.66529	1	17416	17416		2.1763	0.2517	1	10867	+		14084	9826	8161	8326	11111	11111					0.11372011282969652
LKRQSLYYSY	10	Unmodified	_LKRQSLYYSY_					0	0	0			REV__nc|ENSG00000196090|O14522-1|PTPRT	REV__nc|ENSG00000196090|O14522-1|PTPRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.8509697861001	2	660.85097	1319.68739	1.2869	0.00085046	-6.8474	-0.0045251	-5.5605	-0.0036747	660.846227279493	35.07	0.096539	35.07	34.998	35.094	-4.5776E-05	1149	73	0.92958635	0.044066966	0.9280669	376.22223	0	17.834808						218	5	3	NaN	NaN	NaN	0.77513	1	18254	18254		1.7022	0.37103	1	20868	+		14085	13204	8162	8327	11112	11112					0.04033044114612494
LKRQSLYYSY	10	Unmodified						0	0	0			REV__nc|ENSG00000196090|O14522-1|PTPRT	REV__nc|ENSG00000196090|O14522-1|PTPRT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	660.85097	1319.68739	1.2869	0.00085046	-6.8474	-0.0045251	-5.5605	-0.0036747	660.846227279493	35.07	0.096539	35.07	34.998	35.094	-4.5776E-05	1149	73	0.92958635	0.044066966	0.9280669	376.22223		17.834808	0.023397	-0.00023291	0.006584	NaN	1.7022	218	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20868	+		14086	13204	8162	8327							0.04033044114612494
LKSERDKIFL	10	Unmodified	_LKSERDKIFL_					0	0	0		TSGA10|p.K225Nfs*69|1|0.3|ENSG00000135951|chr2:99081334-99081334|T/-|frameshift_variant;nc|ENSG00000135951|Q9BZW7-2|TSGA10;ENST00000478090.5_1_2:99689501-99743552:-|nuORF;ENSG00000135951|ENST00000393483|TSGA10	TSGA10|p.K225Nfs*69|1|0.3|ENSG00000135951|chr2:99081334-99081334|T/-|frameshift_variant	TSGA10|p.K225Nfs*69|1|0.3|ENSG00000135951|chr2:99081334-99081334|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.86916253925	2	624.869163	1247.72377	0.71116	0.00044438	-4.121	-0.0025751	-3.4098	-0.0021307	624.866634090556	27.566	0.072414	27.557	27.533	27.605	-0.009552	1149	37	0.92958635	0.022021592	0.9280669	376.447	0	8.917908						129	4	4	NaN	NaN	NaN	0.76892	1	16981	16981		3.2116	0	1	17525			14087	2977	8163	8328	11113	11113					0.10981921011330087
LKSIFYCCFIL	11	Unmodified	_LKSIFYCCFIL_					0	0	0			REV__RNF122|p.Y89Ifs*17|1|0.15|ENSG00000133874|chr8:33551049-33551050|-/T|frameshift_variant	REV__RNF122|p.Y89Ifs*17|1|0.15|ENSG00000133874|chr8:33551049-33551050|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3534451475	2	675.353445	1348.69234	0.93748	0.00063313	-10.698	-0.007225	-9.7606	-0.0065918	675.3462935123181	34.831	0.096497	34.831	34.806	34.903	0	1098	46	0.960755	0.027472138	0.960755	388.75018	0	11.116058						89	5	3	NaN	NaN	NaN	0.72685	1	19528	19528		5.6942	0.50528	1	5895.6	+		14088	9573	8164	8329	11114	11114					0.03193888661348865
LKSKQGPIDV	10	Unmodified	_LKSKQGPIDV_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.8216810304	2	542.821681	1083.62881	1.3719	0.00074468	1.3065	0.00070918	2.6783	0.0014539	542.8225531161625	27.543	0.14486	27.543	27.446	27.591	0	1263	43	0.85970795	0.025797546	0.85970795	348.72525	0	10.464325						104	7	2	NaN	NaN	NaN	0.70677	1	12140	12140		7.5876	1.8934	1	7864.9			14089	1326	8165	8330	11115	11115					0.09033987540124144
LKSLIPVR	8	Unmodified	_LKSLIPVR_					0	0	0			REV__ENST00000522823.5_1_5:169702797-169724783:-|nuORF	REV__ENST00000522823.5_1_5:169702797-169724783:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	925.6193133180001	1	925.619313	924.612037	-0.57554	-0.00053273	-8.0939	-0.0074918	-8.6694	-0.0080246	925.6111440491262	59.01	0.12004	59.01	58.962	59.082	-0.00045395	240	52	1.4766881	0.030200124	1.4751687	300.1467	0	6.1383667						105	6	2	NaN	NaN	NaN	0.8439	1	6369	6369		3.1533	0	1	7462	+		14090	8469	8166	8331	11116	11116					0.14671531444844277
LKSLRKKD	8	Unmodified	_LKSLRKKD_					0	0	0			REV__ENSG00000168818|ENST00000306200|STX18	REV__ENSG00000168818|ENST00000306200|STX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.6309406368	1	987.630941	986.623664	1.7621	0.0017403	1.6828	0.001662	3.4449	0.0034023	987.6326565150957	38.634	0.048008	38.638	38.614	38.662	0.0040245	201	67	1.4997677	0.03903079	1.4982482	304.55646	0	7.925934						82	3	2	NaN	NaN	NaN	0.7718	1	7951	7951		13.003	0	1	10353	+		14091	10524	8167	8332	11117	11117					0.12981728468173515
LKSLTYLSR	9	Unmodified	_LKSLTYLSR_					0	0	0		ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	ENSG00000169902|ENST00000304842|TPST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.82422371935	2	540.824224	1079.63389	1.4669	0.00079336	-0.33232	-0.00017973	1.1346	0.00061363	540.8239398279273	14.765	0.12005	14.765	14.693	14.813	0	1212	31	0.8910048	0.01839298	0.8910048	361.43704	0	7.461151						55	6	2	NaN	NaN	NaN	0.40649	1	11981	11981		13.463	1.4144	1	4924.8			14092	4701	8168	8333	11118	11118					0.09726291402739662
LKSNVSDAV	9	Unmodified	_LKSNVSDAV_					0	0	0		nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	nc|ENSG00000111669|P60174-4|TPI1	nc|ENSG00000111669|P60174-4|TPI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5047370702	1	932.504737	931.497461	1.9386	0.0018077	-2.2506	-0.0020987	-0.31196	-0.00029091	932.5044004443571	28.315	0.072365	28.315	28.267	28.339	0	318	61	1.4304334	0.03563726	1.4304334	290.71356	0	7.242737						77	4	2	NaN	NaN	NaN	0.44082	1	6633	6633		12.049	0.87837	1	6333.1			14093	1826	8169	8334	11119	11119					0.02897177172235388
LKSSLNFE	8	Unmodified	_LKSSLNFE_					0	0	0		nc|ENSG00000062194|Q86WP2-3|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1	nc|ENSG00000062194|Q86WP2-3|GPBP1	nc|ENSG00000062194|Q86WP2-3|GPBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.25309993869996	2	469.2531	936.491647	1.681	0.00078882	2.1258	0.00099754	3.8068	0.0017864	469.25454441053506	26.07	0.1931	26.07	26.022	26.215	0	1344	67	0.8098828	0.040675223	0.8098828	329.1617	0	16.531708						244	9	4	NaN	NaN	NaN	0.79607	1	6758	6758		9.746	1.4557	1	30323			14094	7904	8170	8335	11120	11120					0.020860786605680914
LKSSLNFE	8	Unmodified						0	0	0		nc|ENSG00000062194|Q86WP2-3|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1	nc|ENSG00000062194|Q86WP2-3|GPBP1	nc|ENSG00000062194|Q86WP2-3|GPBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	469.2531	936.491647	0.90007	0.00042236	4.822	0.0022627	5.7221	0.0026851	469.25639216261004	26.456	0.072378	26.445	26.445	26.517	-0.011137	1338	31	0.81357855	0.018476725	0.8120591	330.66376		7.5095215	0.18737	0.0021749	0.0010882	NaN	9.746	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4047.1			14095	7904	8170	8335							0.020860786605680914
LKSYVYIQ	8	Unmodified	_LKSYVYIQ_					0	0	0			REV__ENSG00000125879|ENST00000246081|OTOR	REV__ENSG00000125879|ENST00000246081|OTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.28694275605	2	507.286943	1012.55933	1.4376	0.00072929	-5.34	-0.0027089	-3.9024	-0.0019796	507.2849509351655	20.766	0.096418	20.766	20.718	20.814	0	1323	70	0.8228144	0.042448223	0.8228144	334.054	0	17.233551						130	5	3	NaN	NaN	NaN	0.81756	1	9093	9093		6.8632	1.6743	1	13234	+		14096	9406	8171	8336	11121	11121					0.05355528591371694
LKTLCCEFL	9	Unmodified	_LKTLCCEFL_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2746635102501	2	535.274664	1068.53477	1.7472	0.00093523	-1.6415	-0.00087868	0.10565	5.6551E-05	535.27368817936	14.405	0.14389	14.405	14.333	14.477	0	1302	64	0.8357362	0.038736105	0.8357362	339.06168	0	15.715393						125	7	2	NaN	NaN	NaN	0.3947	1	11494	11494		4.7291	0	1	9252.5			14097	6148	8172	8337	11122	11122					0.0032480912200298917
LKTLLEGISR	10	Unmodified	_LKTLLEGISR_					0	0	0		nc|ENSG00000154040|O75952-4|CABYR;ENSG00000154040|ENST00000399496|CABYR;nc|ENSG00000154040|O75952-2|CABYR;nc|ENSG00000154040|O75952|CABYR	nc|ENSG00000154040|O75952-4|CABYR	nc|ENSG00000154040|O75952-4|CABYR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.23616258576664	3	377.236163	1128.68666	1.6024	0.0006045	0.61135	0.00023062	2.2138	0.00083512	377.2364172594807	22.356	0.096457	22.356	22.332	22.429	0	1416	55	0.76547134	0.03335917	0.76547134	465.51126	0	20.286957						117	5	3	NaN	NaN	NaN	0.77201	1	14043	14043		2.4611	0.12301	1	11392			14098	3824	8173	8338	11123	11123					0.1274624946554468
LKTRTEEQR	9	Unmodified	_LKTRTEEQR_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.5509212641333	3	387.550921	1159.63093	1.4732	0.00057093	0.31081	0.00012046	1.784	0.00069138	387.5513785579365	13.252	0.14413	13.252	13.228	13.373	0	1548	73	0.6837494	0.044662774	0.6837494	415.67947	0	27.152344						221	7	3	NaN	NaN	NaN	0.35794	1	15140	15140		10.244	0	1	36139	+		14099	11198	8174	8339	11124	11124					0.057504162779423496
LKVYLKPLV	9	Unmodified	_LKVYLKPLV_					0	0	0			REV__ENST00000444468.1_1_X:128542382-128542532:+|nuORF	REV__ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.2424774284666	3	358.242477	1071.7056	2.111	0.00075626	-3.5558	-0.0012738	-1.4447	-0.00051756	358.24132048014366	22.935	0.14443	22.935	22.911	23.055	0	1425	58	0.7599118	0.03521055	0.7599118	462.42615	0	21.426544						232	7	3	NaN	NaN	NaN	0.13999	1	11644	11644		30.035	1.5401	1	69666	+		14100	11159	8175	8340	11125	11125					0.17261830827237645
LKVYLKPLV	9	Unmodified						0	0	0			REV__ENST00000444468.1_1_X:128542382-128542532:+|nuORF	REV__ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	358.242477	1071.7056	2.111	0.00075626	-3.5558	-0.0012738	-1.4447	-0.00051756	358.24132048014366	22.935	0.14443	22.935	22.911	23.055	0	1425	58	0.7599118	0.03521055	0.7599118	462.42615		21.426544	-0.065278	-0.00039002	0.0016865	NaN	30.035	232	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69666	+		14101	11159	8175	8340							0.17261830827237645
LKWESIFSH	9	Unmodified	_LKWESIFSH_					0	0	0		ENST00000354336.7_1_22:21304186-21304300:+|nuORF	ENST00000354336.7_1_22:21304186-21304300:+|nuORF	ENST00000354336.7_1_22:21304186-21304300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.80074862305	2	573.800749	1145.58694	1.2136	0.00069635	-0.54175	-0.00031086	0.67182	0.00038549	573.800961573081	24.067	0.2171	24.055	23.982	24.199	-0.012749	1197	58	0.9001988	0.034941077	0.8986794	364.9016	0	14.163574						173	10	3	NaN	NaN	NaN	0.47587	1	14169	14169		10.605	0.85897	1	18233			14102	6563	8176	8341	11126	11126					0.01997431851600595
LKWYLVGLR	9	Unmodified	_LKWYLVGLR_					0	0	0			REV__ENSG00000182551|ENST00000327435|ADI1	REV__ENSG00000182551|ENST00000327435|ADI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.23772640156665	3	383.237726	1146.69135	1.4421	0.00055268	-5.1207	-0.0019624	-3.6786	-0.0014098	383.2355255228869	15.005	0.24023	15.005	14.909	15.15	0	1446	40	0.7469324	0.024114966	0.7469324	454.15118	0	14.662445						278	11	3	NaN	NaN	NaN	0.42817	1	14694	14694		12.57	0	1	55838	+		14103	10868	8177	8342	11127	11127					0.12387178398989818
LKWYLVGLR	9	Unmodified						0	0	0			REV__ENSG00000182551|ENST00000327435|ADI1	REV__ENSG00000182551|ENST00000327435|ADI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	383.237726	1146.69135	1.4421	0.00055268	-5.1207	-0.0019624	-3.6786	-0.0014098	383.2355255228869	15.005	0.24023	15.005	14.909	15.15	0	1446	40	0.7469324	0.024114966	0.7469324	454.15118		14.662445	0	0	0	NaN	12.57	278	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55838	+		14104	10868	8177	8342							0.12387178398989818
LKYFSVKRGR	10	Unmodified	_LKYFSVKRGR_					0	0	0			REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.37748909785	2	627.377489	1252.74043	1.498	0.00093983	6.6845	0.0041937	8.1825	0.0051335	627.3822116902517	41.328	0.74586	41.336	40.951	41.697	0.0082626	1197	106	0.9001988	0.0643999	0.8986794	364.53012	0	26.07837						2069	32	3	NaN	NaN	NaN	0.74182	1	17082	17082		5.1889	1.9773	1	1168000	+		14105	12715	8178	8343	11128	11128					0.12416466687909633
LKYFSVKRGR	10	Unmodified						0	0	0			REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.377489	1252.74043	1.6094	0.0010097	5.8556	0.0036736	7.4649	0.0046833	627.3813576668954	41.426	0.84177	41.426	40.897	41.738	0	1200	106	0.89836043	0.06440687	0.89836043	363.78568		26.081177	0.044764	-0.00063902	-0.00015948	NaN	5.1889	1865	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955830	+		14106	12715	8178	8343							0.12416466687909633
LKYFSVKRGR	10	Unmodified						0	0	0			REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.377489	1252.74043	1.498	0.00093983	6.6845	0.0041937	8.1825	0.0051335	627.3822116902517	41.328	0.74586	41.336	40.951	41.697	0.0082626	1197	106	0.9001988	0.0643999	0.8986794	364.53012		26.07837	-0.044764	0.00040112	0.00015948	NaN	5.1889	2069	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168000	+		14107	12715	8178	8343							0.12416466687909633
LKYGGGGG	8	Unmodified	_LKYGGGGG_					0	0	0			REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF	REV__ENST00000371222.3_1_1:59247375-59247612:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073002	1	708.367515	707.360239	1.6797	0.0011898	-1.1485	-0.00081358	0.53118	0.00037627	708.3664757022315	18.029	0.11991	18.029	18.005	18.125	0	1386	40	0.78399014	0.02406013	0.78399014	160.06741	0	4.9123535						130	6	2	NaN	NaN	NaN	0.84887	1	3357	3357		0.32989	0	1	16597	+		14108	11895	8179	8344	11129	11129					-0.005146869166537726
LKYIKEAVR	9	Unmodified	_LKYIKEAVR_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.9010028163	3	373.901003	1118.68118	2.4883	0.00093036	-1.8285	-0.00068367	0.65977	0.00024669	373.9005423842356	15.124	0.048021	15.112	15.112	15.16	-0.011738	1482	25	0.72465914	0.014860153	0.7231397	440.73938	0	9.037964						36	3	2	NaN	NaN	NaN	0.41527	1	13229	13229		13.101	0	1	2397.6			14109	3242	8180	8345	11130	11130					0.12658570673738723
LKYLQRERL	9	Unmodified	_LKYLQRERL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3|CECR2	REV__nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.86949689025	2	609.869497	1217.72444	1.3195	0.00080474	-0.22252	-0.00013571	1.097	0.00066903	609.8693518985966	16.686	0.23991	16.686	16.59	16.83	0	1146	37	0.93142134	0.022019207	0.93142134	377.29175	0	8.919373						199	11	3	NaN	NaN	NaN	0.32672	1	16941	16941		19.164	0	1	20081	+		14110	8780	8181	8346	11131	11131					0.1242876045103003
LKYMTKWIQE	10	Unmodified	_LKYMTKWIQE_					0	0	0		ENST00000510054.1_1_4:185033764-185038938:-|nuORF;ENSG00000164303|ENST00000296741|ENPP6	ENST00000510054.1_1_4:185033764-185038938:-|nuORF	ENST00000510054.1_1_4:185033764-185038938:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3575733977001	2	670.357573	1338.70059	0.97751	0.00065528	5.8492	0.003921	6.8267	0.0045763	670.3603939798718	35.239	0.096519	35.239	35.191	35.287	-4.1962E-05	1173	46	0.91489893	0.027546287	0.9133795	370.2234	0	11.146912						123	5	3	NaN	NaN	NaN	0.76892	1	18526	18526		3.2116	0.32214	1	9322.5			14111	4311	8182	8347	11132	11132					0.04479158902358904
LKYVFLSK	8	Unmodified	_LKYVFLSK_					0	0	0			REV__MSTC_dup783|chr4:9823989-9824389:+|1.054793696432554|0.4477763399962282|1.24|517.0|8|2|sense	REV__MSTC_dup783|chr4:9823989-9824389:+|1.054793696432554|0.4477763399962282|1.24|517.0|8|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.6080799297001	1	997.60808	996.600803	1.9708	0.0019661	-6.9596	-0.006943	-4.9888	-0.0049769	997.6011554732607	53.755	0.048252	53.755	53.731	53.779	0	264	52	1.4624695	0.030222535	1.4624695	296.94144	0	6.136444						104	3	3	NaN	NaN	NaN	0.83582	1	8459	8459		4.4131	0	1	10313	+		14112	13073	8183	8348	11133	11133					0.10236709350704132
LKYWMMTEFR	10	Unmodified	_LKYWMMTEFR_					0	0	0		nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.8437759182	2	702.843776	1403.673	0.56287	0.00039561	3.274	0.0023011	3.8368	0.0026967	703.3468436831864	41.785	0.12033	41.794	41.722	41.842	0.0089989	1152	43	0.92775106	0.025700212	0.9262317	375.24655	0	10.3949585						102	6	2	NaN	NaN	NaN	0.73444	1	19148	19148		5.6942	2.4825	1	8441.3			14113	7968	8184	8349	11134	11134					-0.01269067629550591
LLAAGCGA	8	Unmodified	_LLAAGCGA_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021001	1	675.349422	674.342146	1.0955	0.00073987	5.1075	0.0034494	6.2031	0.0041892	675.3529012967998	25.033	0.1689	25.021	24.876	25.045	-0.012011	753	127	1.1701111	0.07598138	1.1685916	239.12384	0	15.527542						322	8	2	NaN	NaN	NaN	0.83849	1	2627	2627		4.0537	2.3833	1	24517	+		14114	10698	8185	8350	11135	11135					-0.008051451630194606
LLAAGCGA	8	Unmodified						0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.3656	0.00092227	4.088	0.0027608	5.4536	0.0036831	675.352088630741	25.081	0.048262	25.081	25.081	25.129	0	741	118	1.1773466	0.07057309	1.1773466	240.6025		14.422302	0.030249	-0.00047406	0.0043775	NaN	4.0537	133	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10547	+		14115	10698	8185	8350							-0.008051451630194606
LLAAGCGA	8	Unmodified						0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.0955	0.00073987	5.1075	0.0034494	6.2031	0.0041892	675.3529012967998	25.033	0.1689	25.021	24.876	25.045	-0.012011	753	127	1.1701111	0.07598138	1.1685916	239.12384		15.527542	-0.030249	0.00021447	-0.0043775	NaN	4.0537	322	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24517	+		14116	10698	8185	8350							-0.008051451630194606
LLAASRST	8	Unmodified	_LLAASRST_					0	0	0			REV__ENSG00000130312|ENST00000252602|MRPL34	REV__ENSG00000130312|ENST00000252602|MRPL34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4730430113001	1	818.473043	817.465767	2.0901	0.0017107	-2.7359	-0.0022393	-0.64581	-0.00052858	818.4706046956045	54.524	0.096409	54.524	54.5	54.596	0	435	37	1.360811	0.021471381	1.360811	277.1252	0	4.3725586						63	5	2	NaN	NaN	NaN	0.83211	1	4984	4984		4.9097	0	1	7095.6	+		14117	9482	8186	8351	11136	11136					0.049732292089515795
LLAASRST	8	Unmodified						0	0	0			REV__ENSG00000130312|ENST00000252602|MRPL34	REV__ENSG00000130312|ENST00000252602|MRPL34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	818.473043	817.465767	2.0901	0.0017107	-2.7359	-0.0022393	-0.64581	-0.00052858	818.4706046956045	54.524	0.096409	54.524	54.5	54.596	0	435	37	1.360811	0.021471381	1.360811	277.1252		4.3725586	0.0013694	-0.001492	-0.001029	NaN	4.9097	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7095.6	+		14118	9482	8186	8351							0.049732292089515795
LLAASRST	8	Unmodified						0	0	0			REV__ENSG00000130312|ENST00000252602|MRPL34	REV__ENSG00000130312|ENST00000252602|MRPL34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	818.473043	817.465767	0.00045721	3.7422E-07	0.86042	0.00070423	0.86088	0.00070461	818.4740969379153	54.522	0.12054	54.521	54.497	54.617	-0.0006218	429	34	1.3643885	0.01967895	1.362869	277.85373		4.0075684	-0.0013694	0.0014515	0.001029	NaN	4.9097	67	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6595.6	+		14119	9482	8186	8351							0.049732292089515795
LLAGGPAK	8	Unmodified	_LLAGGPAK_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.4508510062	1	726.450851	725.443575	1.0648	0.00077356	-2.7989	-0.0020332	-1.734	-0.0012597	726.4481550438345	26.94	0.12061	26.94	26.891	27.012	0	648	52	1.2333171	0.03064096	1.2333171	251.68733	0	6.253006						127	6	2	NaN	NaN	NaN	0.84887	1	3698	3698		0.32989	0	1	13749			14120	3541	8187	8352	11137	11137					0.06987049531176126
LLAGGPAK	8	Unmodified						0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.450851	725.443575	1.1092	0.00080581	-3.0509	-0.0022163	-1.9417	-0.0014105	726.4485440829912	26.939	0.21725	26.928	26.904	27.121	-0.010645	648	52	1.2333171	0.03064096	1.2317977	251.68733		6.253006	-0.0057302	-8.6765E-05	-0.00075972	NaN	0.32989	164	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14965			14121	3541	8187	8352							0.06987049531176126
LLAHGAVPI	9	Unmodified	_LLAHGAVPI_					0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.77654524525	2	445.776545	889.538538	1.178	0.00052515	-1.8552	-0.00082699	-0.67711	-0.00030184	445.7756729701087	22.886	0.14469	22.872	22.824	22.969	-0.01354	1473	61	0.7302302	0.03713423	0.7287108	297.01483	0	15.104034						232	7	3	NaN	NaN	NaN	0.58547	1	5814	5814		6.0903	0	1	35899	+		14122	9977	8188	8353	11138	11138					0.089349830023707
LLAHGAVPI	9	Unmodified						0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	445.776545	889.538538	1.178	0.00052515	-1.8552	-0.00082699	-0.67711	-0.00030184	445.7756729701087	22.886	0.14469	22.872	22.824	22.969	-0.01354	1473	61	0.7302302	0.03713423	0.7287108	297.01483		15.104034	0.041082	-3.9209E-05	0.00016869	NaN	6.0903	232	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35899	+		14123	9977	8188	8353							0.089349830023707
LLALLALPA	9	Unmodified	_LLALLALPA_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.6022662702999	1	894.602266	893.59499	-0.34874	-0.00031198	-1.1848	-0.0010599	-1.5335	-0.0013719	894.6010330749004	57.163	0.048065	57.162	57.138	57.186	-0.00053787	276	52	1.4553556	0.030241847	1.4538362	295.9613	0	6.149994						88	3	3	NaN	NaN	NaN	0.6762	1	5868	5868		1.2418	0	1	11096			14124	38	8189	8354	11139	11139					0.14393610839010762
LLALVLHHQR	10	Unmodified	_LLALVLHHQR_					0	0	0		nc|ENSG00000179241|Q86YD5-2|LDLRAD3;ENSG00000179241|ENST00000315571|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5838966586667	3	400.583897	1198.72986	0.63155	0.00025299	-8.5551	-0.003427	-7.9235	-0.003174	400.579965182536	41.811	0.096127	41.811	41.811	41.907	0	1431	43	0.75620437	0.025960147	0.75620437	459.5519	0	15.776184						96	5	2	NaN	NaN	NaN	0.77318	1	16441	16441		1.8901	0.55896	1	8786.8			14125	5145	8190	8355	11140	11140					0.13844484033506887
LLAMEPLSFI	10	Unmodified	_LLAMEPLSFI_					0	0	0			REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3173856047	2	567.317386	1132.62022	1.5982	0.00090666	1.4981	0.00084989	3.0962	0.0017566	567.318783883722	24.188	0.048298	24.188	24.164	24.213	0	1197	49	0.9001988	0.029412925	0.9001988	364.9513	0	11.924347						81	3	2	NaN	NaN	NaN	0.53991	1	14199	14199		17.799	1.9771	1	31714	+		14126	10502	8191	8356	11141	11141					0.059212975792888756
LLAPDGTP	8	Unmodified	_LLAPDGTP_					0	0	0			REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4246958352002	1	783.424696	782.417419	1.2818	0.0010042	1.74	0.0013632	3.0218	0.0023673	783.4252852163438	30.679	0.16887	30.673	30.649	30.818	-0.0057545	504	85	1.3196158	0.050201416	1.3180964	268.93478	0	10.2309265						195	8	2	NaN	NaN	NaN	0.82332	1	4442	4442		6.0903	0	1	21953	+		14127	12955	8192	8357	11142	11142					0.017507355690554505
LLAPDGTP	8	Unmodified						0	0	0			REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.424696	782.417419	1.3083	0.0010249	2.7399	0.0021465	4.0482	0.0031715	783.426317217298	30.68	0.12066	30.68	30.656	30.777	0	504	88	1.3196158	0.051997066	1.3196158	268.93478		10.596893	0.0033941	0.00038143	0.00075972	NaN	6.0903	185	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17705	+		14128	12955	8192	8357							0.017507355690554505
LLAPDGTP	8	Unmodified						0	0	0			REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.424696	782.417419	1.2818	0.0010042	1.74	0.0013632	3.0218	0.0023673	783.4252852163438	30.679	0.16887	30.673	30.649	30.818	-0.0057545	504	85	1.3196158	0.050201416	1.3180964	268.93478		10.2309265	-0.0033941	-0.00040194	-0.00075972	NaN	6.0903	195	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21953	+		14129	12955	8192	8357							0.017507355690554505
LLAPPSPG	8	Unmodified	_LLAPPSPG_					0	0	0		nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8	nc|ENSG00000130052|Q92502|STARD8	nc|ENSG00000130052|Q92502|STARD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.4348665910001	1	751.434867	750.42759	1.9189	0.0014419	-2.1359	-0.001605	-0.21698	-0.00016305	751.4337182387203	28.701	0.072407	28.692	28.668	28.74	-0.0083504	540	40	1.2980826	0.023341298	1.2965631	264.7407	0	4.760437						58	4	2	NaN	NaN	NaN	0.82797	1	3994	3994		5.4659	0	1	3803.9			14130	2623	8193	8358	11143	11143					0.04239343294284481
LLASGPLC	8	Unmodified	_LLASGPLC_					0	0	0			REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.4225873452001	1	773.422587	772.415311	1.7616	0.0013624	0.50057	0.00038715	2.2621	0.0017496	773.4227093826246	34.493	0.21714	34.493	34.445	34.662	0	498	52	1.3232021	0.030477881	1.3232021	269.72583	0	6.212677						208	10	3	NaN	NaN	NaN	0.78605	1	4392	4392		11.091	0	1	24167	+		14131	11892	8194	8359	11144	11144					0.019999835595967852
LLASGPLC	8	Unmodified						0	0	0			REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	773.422587	772.415311	1.7616	0.0013624	0.50057	0.00038715	2.2621	0.0017496	773.4227093826246	34.493	0.21714	34.493	34.445	34.662	0	498	52	1.3232021	0.030477881	1.3232021	269.72583		6.212677	0.00095991	-4.1035E-05	0.00075972	NaN	11.091	208	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24167	+		14132	11892	8194	8359							0.019999835595967852
LLASGPLC	8	Unmodified						0	0	0			REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	REV__ENST00000370888.5_1_6:53787644-53787806:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	773.422587	772.415311	1.3788	0.0010664	0.6217	0.00048083	2.0005	0.0015472	773.4235124010918	34.492	0.16885	34.491	34.443	34.612	-0.0006485	498	61	1.3232021	0.035858154	1.3216827	269.72583		7.3094482	-0.00095991	5.2647E-05	-0.00075972	NaN	11.091	201	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22729	+		14133	11892	8194	8359							0.019999835595967852
LLAVLRGL	8	Unmodified	_LLAVLRGL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.5821995302002	1	854.5822	853.574923	-0.50065	-0.00042785	4.071	0.003479	3.5703	0.0030511	854.585520412758	58.003	0.28821	58.002	57.81	58.098	-0.00051117	351	85	1.4108255	0.049934745	1.409306	287.10953	0	10.161957						383	13	2	NaN	NaN	NaN	0.84887	1	5309	5309		0.32989	0	1	70565			14134	455	8195	8360	11145	11145					0.14227859899096984
LLCFSPLS	8	Unmodified	_LLCFSPLS_					0	0	0			REV__ENSG00000100036|ENST00000343605|SLC35E4	REV__ENSG00000100036|ENST00000343605|SLC35E4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.23586431325003	2	440.235864	878.457176	1.5319	0.00067439	3.2628	0.0014364	4.7947	0.0021108	440.23715860753026	17.402	0.12001	17.388	17.34	17.46	-0.013569	1479	37	0.72651637	0.022285342	0.7249969	295.56088	0	9.066132						83	6	2	NaN	NaN	NaN	0.77489	1	5662	5662		12.588	1.0394	1	9578	+		14135	8782	8196	8361	11146	11146					0.013085392481229974
LLCFSPLS	8	Unmodified						0	0	0			REV__ENSG00000100036|ENST00000343605|SLC35E4	REV__ENSG00000100036|ENST00000343605|SLC35E4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	440.235864	878.457176	1.5319	0.00067439	3.2628	0.0014364	4.7947	0.0021108	440.23715860753026	17.402	0.12001	17.388	17.34	17.46	-0.013569	1479	37	0.72651637	0.022285342	0.7249969	295.56088		9.066132	0.0035565	0.0007434	-0.00075972	NaN	12.588	83	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9578	+		14136	8782	8196	8361							0.013085392481229974
LLCGFGDT	8	Unmodified	_LLCGFGDT_					0	0	0			REV__ENSG00000006555|ENST00000371276|TTC22	REV__ENSG00000006555|ENST00000371276|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.1941964638	2	413.194196	824.37384	1.3759	0.0005685	-4.437	-0.0018333	-3.0612	-0.0012649	413.19253344048974	29.593	0.4343	29.586	29.49	29.924	-0.0070667	1386	94	0.78399014	0.05742395	0.7824707	319.264	0	23.384735						987	19	4	NaN	NaN	NaN	0.84651	1	4961	4961		1.6704	0	1	358370	+		14137	8371	8197	8362	11147	11147					-0.0453719719973833
LLCGLLLVAL	10	Unmodified	_LLCGLLLVAL_					0	0	0			REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.3328387036502	2	514.332839	1026.65112	0.99025	0.00050932	4.9569	0.0025495	5.9472	0.0030588	514.335518343269	29.69	0.12067	29.683	29.635	29.755	-0.0070648	1284	43	0.8468043	0.025811553	0.8452849	343.73032	0	10.477264						126	6	3	NaN	NaN	NaN	0.25514	1	9453	9453		30.791	2.9305	1	11006	+		14138	10747	8198	8363	11148	11148					0.13886495684209876
LLCHMPLL	8	Unmodified	_LLCHMPLL_					0	0	0		ENST00000479872.5_1_1:165877514-165877814:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	ENST00000479872.5_1_1:165877514-165877814:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.5154418729002	1	939.515442	938.508165	1.7044	0.0016013	7.1463	0.0067141	8.8507	0.0083154	939.5230970227559	28.942	0.096561	28.933	28.885	28.982	-0.0083485	249	52	1.4713576	0.030216217	1.4698381	298.99817	0	6.14032						118	5	2	NaN	NaN	NaN	0.83849	1	6653	6653		4.0537	0.48046	1	8581.2			14139	7198	8199	8364	11149	11149					0.03645165021328012
LLCHPHPLNQ	10	Unmodified	_LLCHPHPLNQ_					0	0	0			REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3056752129502	2	586.305675	1170.5968	1.0833	0.00063517	1.2264	0.00071907	2.3098	0.0013542	586.304343850515	26.746	0.048283	26.735	26.735	26.783	-0.010645	1170	103	0.91673553	0.062482238	0.9152161	371.51044	0	25.321167						166	3	3	NaN	NaN	NaN	0.72631	1	14968	14968		6.2502	0	1	28242	+		14140	11946	8200	8365	11150	11150					0.018322965853712958
LLCHPHPLNQ	10	Unmodified						0	0	0			REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	586.305675	1170.5968	1.6819	0.00098613	6.237	0.0036568	7.9189	0.0046429	586.3103812404199	26.722	0.12074	26.722	26.65	26.77	0	1170	94	0.91673553	0.056978285	0.91673553	371.51044		23.090668	-0.0065623	0.0025628	0.00075972	NaN	6.2502	168	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24362	+		14141	11946	8200	8365							0.018322965853712958
LLCHPHPLNQ	10	Unmodified						0	0	0			REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	REV__ENST00000377897.8_1_11:62574818-62575010:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	586.305675	1170.5968	1.0833	0.00063517	1.2264	0.00071907	2.3098	0.0013542	586.304343850515	26.746	0.048283	26.735	26.735	26.783	-0.010645	1170	103	0.91673553	0.062482238	0.9152161	371.51044		25.321167	0.0065623	-0.0033126	-0.00075972	NaN	6.2502	166	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28242	+		14142	11946	8200	8365							0.018322965853712958
LLCLIGLTV	9	Unmodified	_LLCLIGLTV_					0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5849016466	1	944.584902	943.577625	1.4707	0.0013892	-3.2895	-0.0031072	-1.8188	-0.001718	944.5827836443168	41.45	0.048191	41.45	41.426	41.474	0	900	25	1.0812234	0.014550447	1.0812234	219.70103	0	2.956604						32	3	2	NaN	NaN	NaN	0.66196	1	6918	6918		2.4615	0	1	1562.9	+		14143	12676	8201	8366	11151	11151					0.10357947241709553
LLCLIGLTV	9	Unmodified						0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	944.584902	943.577625	1.4707	0.0013892	-3.2895	-0.0031072	-1.8188	-0.001718	944.5827836443168	41.45	0.048191	41.45	41.426	41.474	0	900	25	1.0812234	0.014550447	1.0812234	219.70103		2.956604	-0.039479	-0.00029813	0.00075972	NaN	2.4615	32	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562.9	+		14144	12676	8201	8366							0.10357947241709553
LLCLIGLTV	9	Unmodified						0	0	0			REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	REV__ENST00000535939.5_2_12:10746401-10750756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.584902	943.577625	1.8866	0.0017821	-2.6142	-0.0024694	-0.72763	-0.00068731	944.5826223632147	41.52	0.096203	41.529	41.481	41.577	0.0082626	900	25	1.0812234	0.014550447	1.0797039	219.70103		2.956604	0.039479	0.00033975	-0.00075972	NaN	2.4615	51	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2772.9	+		14145	12676	8201	8366							0.10357947241709553
LLCPQFHR	8	Unmodified	_LLCPQFHR_					0	0	0			REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	REV__ENST00000482378.6_2_12:56226965-56228769:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.2711041141	2	507.271104	1012.52766	1.488	0.00075484	-3.2521	-0.0016497	-1.764	-0.00089484	507.2694631293924	30.487	0.12066	30.487	30.439	30.56	0	1305	40	0.83389086	0.023989916	0.83389086	338.55106	0	9.739624						105	6	3	NaN	NaN	NaN	0.77489	1	9082	9082		12.588	1.9829	1	10615	+		14146	12392	8202	8367	11152	11152					0.021892573564400664
LLCSHLSH	8	Unmodified	_LLCSHLSH_					0	0	0			REV__ENST00000564583.1_1_16:27455877-27457360:+|nuORF	REV__ENST00000564583.1_1_16:27455877-27457360:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.4610981165	1	909.461098	908.453822	2.3477	0.0021352	7.2955	0.0066349	9.6432	0.0087701	909.4674430688947	25.998	0.048264	25.998	25.974	26.022	0	327	82	1.425088	0.048143744	1.425088	289.73416	0	9.788086						75	3	2	NaN	NaN	NaN	0.82797	1	6209	6209		5.4659	1.0528	1	6469.3	+		14147	12797	8203	8368	11153	11153					-0.004067108058961821
LLDASVLGL	9	Unmodified	_LLDASVLGL_					0	0	0			REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.0779	0.0009707	0.7753	0.00069819	1.8532	0.0016689	900.5409413342179	33.19	0.048267	33.19	33.166	33.214	0	336	46	1.419741	0.02674079	1.419741	288.6898	0	5.4374695						81	3	3	NaN	NaN	NaN	0.36492	1	6074	6074		15.175	0	1	6862.1	+		14148	12909	8204	8369	11154	11154					0.07899839700041866
LLDGSFPQKP	10	Unmodified	_LLDGSFPQKP_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3005814475501	2	551.300581	1100.58661	1.3818	0.0007618	4.6324	0.0025538	6.0142	0.0033156	551.303544684998	13.805	0.19171	13.794	13.723	13.914	-0.010673	1218	58	0.8873258	0.034963727	0.8858064	359.8583	0	14.1796875						151	9	2	NaN	NaN	NaN	0.72369	1	12539	12539		6.4299	1.5202	1	11008	+		14149	9718	8205	8370	11155	11155					0.04034012131774034
LLDGVPVAL	9	Unmodified	_LLDGVPVAL_					0	0	0		nc|ENSG00000151414|Q8TDX7-2|NEK7;ENSG00000151414|ENST00000367385|NEK7	nc|ENSG00000151414|Q8TDX7-2|NEK7	nc|ENSG00000151414|Q8TDX7-2|NEK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5451453219001	1	896.545145	895.537869	1.5917	0.001427	-2.5993	-0.0023304	-1.0076	-0.0009034	896.5427104670592	30.848	0.048269	30.842	30.818	30.866	-0.0057545	303	43	1.4393384	0.024924874	1.437819	292.69443	0	5.068573						59	3	2	NaN	NaN	NaN	0.29681	1	5886	5886		19.118	5.0767	1	4475.5			14150	3737	8206	8371	11156	11156					0.08592143562668753
LLDLDPRPT	9	Unmodified	_LLDLDPRPT_					0	0	0		ENSG00000164047|ENST00000652295|CAMP	ENSG00000164047|ENST00000652295|CAMP	ENSG00000164047|ENST00000652295|CAMP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5782363643	1	1039.57824	1038.57096	1.194	0.0012412	8.2512	0.0085777	9.4451	0.0098189	1039.587683980979	38.299	0.072083	38.299	38.251	38.324	0	132	31	1.5405227	0.017696142	1.5405227	312.61688	0	3.591034						30	4	2	NaN	NaN	NaN	0.53317	1	10155	10155		8.2448	0.70444	1	1534.4			14151	4284	8207	8372	11157	11157					0.053217256147036096
LLDLLRNLQ	9	Unmodified	_LLDLLRNLQ_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3374982701001	2	549.337498	1096.66044	1.0786	0.00059251	-2.0465	-0.0011242	-0.96795	-0.00053173	549.3368515662542	27.228	0.12065	27.218	27.194	27.315	-0.010124	1221	55	0.885486	0.033114612	0.88396657	359.12808	0	13.430328						143	6	3	NaN	NaN	NaN	0.33629	1	12381	12381		16.584	0	1	18567	+		14152	9222	8208	8373	11158	11158					0.11597980294095578
LLDLLRNLQ	9	Unmodified						0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.337498	1096.66044	1.1107	0.00061018	-2.224	-0.0012217	-1.1132	-0.00061153	549.336833239207	27.205	0.096502	27.205	27.181	27.277	0	1218	55	0.8873258	0.033114612	0.8873258	359.87427		13.430328	-0.0066082	-8.8859E-05	0.0016796	NaN	16.584	127	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21208	+		14153	9222	8208	8373							0.11597980294095578
LLDLLRNLQ	9	Unmodified						0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.337498	1096.66044	1.0786	0.00059251	-2.0465	-0.0011242	-0.96795	-0.00053173	549.3368515662542	27.228	0.12065	27.218	27.194	27.315	-0.010124	1221	55	0.885486	0.033114612	0.88396657	359.12808		13.430328	0.0066082	0.00010606	-0.0016796	NaN	16.584	143	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18567	+		14154	9222	8208	8373							0.11597980294095578
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5244098798	1	898.52441	897.517133	1.807	0.0016237	-1.993	-0.0017908	-0.18597	-0.0001671	898.523228869605	26.529	0.072374	26.529	26.505	26.577	0	333	70	1.4215236	0.041011214	1.4215236	289.06204	0	8.339508						136	4	3	NaN	NaN	NaN	0.23112	1	6026	6026		23.334	8.159	1	12801			14155	6003	8209	8374	11159	11159					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.5244098798	1	898.52441	897.517133	1.4173	0.0012735	-0.80217	-0.00072077	0.61514	0.00055272	898.524432022772	26.553	0.12062	26.542	26.494	26.614	-0.010645	333	64	1.4215236	0.0374372	1.4200041	289.06204	0	7.612732						144	6	3	NaN	NaN	NaN	0.074859	1	5914	5914		39.459	17.624	1	13278			14156	6003	8209	8374	11160	11160					0.06427553182993506
LLEAQPLVL	9	Unmodified	_LLEAQPLVL_					0	0	0		ENST00000311015.7_1_19:21541775-21541886:+|nuORF	ENST00000311015.7_1_19:21541775-21541886:+|nuORF	ENST00000311015.7_1_19:21541775-21541886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.31041785235	2	498.310418	994.606283	0.9028	0.00044988	-0.21824	-0.00010875	0.68456	0.00034113	498.31037557351664	34.54	0.14473	34.539	34.467	34.612	-0.00064468	1284	58	0.8468043	0.03505075	0.8452849	343.8768	0	14.233704						214	7	3	NaN	NaN	NaN	0.10363	1	8215	8215		35.296	4.6864	1	23108			14157	6448	8210	8375	11161	11161					0.1087638814251477
LLEAQPLVL	9	Unmodified						0	0	0		ENST00000311015.7_1_19:21541775-21541886:+|nuORF	ENST00000311015.7_1_19:21541775-21541886:+|nuORF	ENST00000311015.7_1_19:21541775-21541886:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	498.310418	994.606283	1.7118	0.00085301	-2.3356	-0.0011639	-0.62382	-0.00031086	498.30919863877074	34.541	0.16891	34.541	34.469	34.638	0	1287	61	0.8449601	0.03689754	0.8449601	343.1279		14.983643	0.00098432	-0.001399	-0.00016237	NaN	35.296	234	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23922			14158	6448	8210	8375							0.1087638814251477
LLEEDDDEDDD	11	Unmodified	_LLEEDDDEDDD_					0	0	0			REV__ENSG00000177732|ENST00000342665|SOX12	REV__ENSG00000177732|ENST00000342665|SOX12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.74134153045	2	661.741342	1321.46813	1.8112	0.0011986	4.7145	0.0031198	6.5257	0.0043183	661.7441725274131	23.369	0.072275	23.369	23.345	23.417	0	1140	37	0.93509084	0.022014499	0.93509084	378.4447	0	8.909576						122	4	4	NaN	NaN	NaN	0.76304	1	19120	19120		3.2116	0.32214	1	9163.7	+		14159	10774	8211	8376	11162	11162					-0.17974521215887762
LLEEDDDEDDD	11	Unmodified						0	0	0			REV__ENSG00000177732|ENST00000342665|SOX12	REV__ENSG00000177732|ENST00000342665|SOX12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	661.741342	1321.46813	1.8112	0.0011986	4.7145	0.0031198	6.5257	0.0043183	661.7441725274131	23.369	0.072275	23.369	23.345	23.417	0	1140	37	0.93509084	0.022014499	0.93509084	378.4447		8.909576	-0.017242	-0.00077641	-0.0001575	NaN	3.2116	122	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9163.7	+		14160	10774	8211	8376							-0.17974521215887762
LLEEDDDEDDD	11	Unmodified						0	0	0			REV__ENSG00000177732|ENST00000342665|SOX12	REV__ENSG00000177732|ENST00000342665|SOX12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	661.741342	1321.46813	2.2321	0.0014771	5.9495	0.003937	8.1816	0.0054141	661.7459675260618	23.416	0.12067	23.403	23.355	23.476	-0.013294	1137	43	0.9369253	0.025683582	0.93540585	379.1871		10.394501	0.017242	0.00085808	0.0001575	NaN	3.2116	123	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10437	+		14161	10774	8211	8376							-0.17974521215887762
LLEGAGGG	8	Unmodified	_LLEGAGGG_					0	0	0		tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3515308921002	1	673.351531	672.344254	1.3316	0.00089665	8.4636	0.005699	9.7952	0.0065956	673.3573940709429	27.664	0.21715	27.664	27.591	27.808	0	684	88	1.2116731	0.052331448	1.2116731	247.63206	0	10.695084						250	10	2	NaN	NaN	NaN	0.82332	1	2652	2652		6.0903	0	1	30615			14162	13844	8212	8377	11163	11163					-0.0050239315355611325
LLEIKNQSE	9	Unmodified	_LLEIKNQSE_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2954960696501	2	537.295496	1072.57644	1.0566	0.00056771	1.7436	0.00093685	2.8002	0.0015046	537.2963983159262	34.95	0.096462	34.95	34.901	34.998	-4.5776E-05	1260	40	0.8615505	0.023950994	0.8600311	349.51788	0	9.716553						105	5	3	NaN	NaN	NaN	0.46215	1	11377	11377		11.17	0.56537	1	9926.4	+		14163	10298	8213	8378	11164	11164					0.04305404406522939
LLELCTHLT	9	Unmodified	_LLELCTHLT_					0	0	0			REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.78370996285	2	521.78371	1041.55287	1.3297	0.00069381	7.0313	0.0036688	8.361	0.0043626	521.7875973612238	34.202	0.072403	34.201	34.177	34.249	-0.0012474	1278	37	0.85049206	0.022124112	0.8489726	345.16187	0	8.978821						65	4	2	NaN	NaN	NaN	0.56671	1	10080	10080		6.8632	0.613	1	7108.1	+		14164	8427	8214	8379	11165	11165					0.03375267368346613
LLELCTHLT	9	Unmodified						0	0	0			REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.78371	1041.55287	1.1398	0.00059471	5.2897	0.0027601	6.4295	0.0033548	521.7870816697701	34.203	0.072365	34.203	34.179	34.252	0	1278	49	0.85049206	0.029508412	0.85049206	345.16187		11.975647	0.0011668	-0.00074209	0.00075972	NaN	6.8632	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7564.1	+		14165	8427	8214	8379							0.03375267368346613
LLELCTHLT	9	Unmodified						0	0	0			REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.78371	1041.55287	1.3297	0.00069381	7.0313	0.0036688	8.361	0.0043626	521.7875973612238	34.202	0.072403	34.201	34.177	34.249	-0.0012474	1278	37	0.85049206	0.022124112	0.8489726	345.16187		8.978821	-0.0011668	0.0010754	-0.00075972	NaN	6.8632	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7108.1	+		14166	8427	8214	8379							0.03375267368346613
LLEPCISMMD	10	Unmodified	_LLEPCISMMD_					0	0	0			REV__CCNB3|p.E541D|1|0.73|ENSG00000147082|chrX:50309792-50309792|G/T|missense_variant	REV__CCNB3|p.E541D|1|0.73|ENSG00000147082|chrX:50309792-50309792|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2608958205001	2	576.260896	1150.50724	1.2927	0.00074493	-5.5715	-0.0032106	-4.2788	-0.0024657	576.2576358251816	35.82	0.21684	35.82	35.771	35.988	0	1218	55	0.8873258	0.0331074	0.8873258	359.6652	0	13.419647						272	10	3	NaN	NaN	NaN	0.70538	1	14820	14820		6.2502	0	1	35442	+		14167	8185	8215	8380	11166	11166					-0.06199462200538619
LLEPDNMEL	9	Unmodified	_LLEPDNMEL_					0	0	0			REV__nc|ENSG00000164347|Q969S9-5|GFM2	REV__nc|ENSG00000164347|Q969S9-5|GFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.26280734525	2	537.262807	1072.51106	1.2488	0.00067093	-2.7703	-0.0014884	-1.5215	-0.00081742	537.7625156608649	34.202	0.31343	34.201	34.153	34.466	-0.0012474	1263	88	0.85970795	0.053417623	0.8581885	348.77066	0	21.670715						741	14	6	NaN	NaN	NaN	0.089764	1	11356	11356		37.302	10.571	1	218040	+		14168	10335	8216	8381	11167	11167					-0.02229333110835796
LLEPDNMEL	9	Unmodified						0	0	0			REV__nc|ENSG00000164347|Q969S9-5|GFM2	REV__nc|ENSG00000164347|Q969S9-5|GFM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.262807	1072.51106	1.7423	0.00093605	-2.5891	-0.001391	-0.84684	-0.00045498	537.7622141449443	34.203	0.2411	34.203	34.155	34.396	0	1263	73	0.85970795	0.04422444	0.85970795	348.77066		17.941162	0.0011668	7.3289E-05	0.00075972	NaN	37.302	587	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208020	+		14169	10335	8216	8381							-0.02229333110835796
LLEPDNMEL	9	Unmodified						0	0	0			REV__nc|ENSG00000164347|Q969S9-5|GFM2	REV__nc|ENSG00000164347|Q969S9-5|GFM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.262807	1072.51106	1.2488	0.00067093	-2.7703	-0.0014884	-1.5215	-0.00081742	537.7625156608649	34.202	0.31343	34.201	34.153	34.466	-0.0012474	1263	88	0.85970795	0.053417623	0.8581885	348.77066		21.670715	-0.0011668	-0.00012136	-0.00075972	NaN	37.302	741	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218040	+		14170	10335	8216	8381							-0.02229333110835796
LLEPTGPG	8	Unmodified	_LLEPTGPG_					0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4246958352002	1	783.424696	782.417419	1.3083	0.0010249	2.7399	0.0021465	4.0482	0.0031715	783.426317217298	30.68	0.12066	30.68	30.656	30.777	0	504	88	1.3196158	0.051997066	1.3196158	268.93478	0	10.596893						185	6	3	NaN	NaN	NaN	0.82797	1	4527	4527		5.4659	0	1	17705	+		14171	11315	8217	8382	11168	11168					0.017507355690554505
LLESLMFLL	9	Unmodified	_LLESLMFLL_					0	0	0		ENST00000373095.5_1_9:130703123-130703396:-|nuORF	ENST00000373095.5_1_9:130703123-130703396:-|nuORF	ENST00000373095.5_1_9:130703123-130703396:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.6216810834	1	1078.62168	1077.6144	1.1754	0.0012678	-4.7667	-0.0051415	-3.5913	-0.0038737	1078.6163646153186	36.109	0.096531	36.109	36.036	36.133	0	84	79	1.5688156	0.045956492	1.5688156	318.20715	0	9.321472						129	5	2	NaN	NaN	NaN	0.17818	1	11875	11875		26.732	1.7706	1	15174			14172	6670	8218	8383	11169	11169					0.07870199067633621
LLESLMFLL	9	Unmodified						0	0	0		ENST00000373095.5_1_9:130703123-130703396:-|nuORF	ENST00000373095.5_1_9:130703123-130703396:-|nuORF	ENST00000373095.5_1_9:130703123-130703396:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1078.62168	1077.6144	1.7122	0.0018468	-8.5717	-0.0092456	-6.8595	-0.0073988	1078.6106053519245	36.083	0.19277	36.084	36.036	36.229	0.0011024	81	91	1.5705823	0.053021073	1.5690628	318.56552		10.754425	-0.012289	-0.0021159	0.00012364	NaN	26.732	233	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22834			14173	6670	8218	8383							0.07870199067633621
LLETIDQLY	9	Unmodified	_LLETIDQLY_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.86925688656663	3	369.869257	1106.58594	2.0321	0.0007516	1.8886	0.00069855	3.9207	0.0014501	369.8701698688135	17.861	0.095955	17.861	17.813	17.909	0	1548	31	0.6837494	0.018615544	0.6837494	415.91318	0	11.323547						62	5	2	NaN	NaN	NaN	0.18779	1	13137	13137		18.233	0	1	5091.5			14174	786	8219	8384	11170	11170					0.036911726920379806
LLETPAGP	8	Unmodified	_LLETPAGP_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.4403458994001	1	797.440346	796.433069	1.2971	0.0010343	4.4968	0.0035859	5.7939	0.0046203	797.4436887780189	32.899	0.14472	32.897	32.849	32.993	-0.0024757	459	46	1.3464937	0.026854873	1.3449743	274.32913	0	5.4713135						163	7	3	NaN	NaN	NaN	0.81807	1	4622	4622		6.794	0	1	15112	+		14175	10485	8220	8385	11171	11171					0.026710220860991285
LLEYQKDNIIN	11	Unmodified	_LLEYQKDNIIN_					0	0	0		tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	tr|U7SKV9|U7SKV9_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01950PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8668168155501	2	681.866817	1361.71908	1.499	0.0010221	-1.0125	-0.00069037	0.48652	0.00033174	681.8674539306654	28.991	0.048277	28.991	28.967	29.015	0	1065	70	0.9808926	0.042101264	0.9808926	396.8599	0	17.033783						75	3	2	NaN	NaN	NaN	0.72342	1	19704	19704		5.9198	2.7082	1	7017.4			14176	13760	8221	8386	11172	11172					0.05268992077913026
LLFCFFPLA	9	Unmodified	_LLFCFFPLA_					0	0	0			REV__ENSG00000088035|ENST00000263440|ALG6	REV__ENSG00000088035|ENST00000263440|ALG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7908067134501	2	535.790807	1069.56706	2.5031	0.0013412	1.4693	0.00078726	3.9725	0.0021284	535.7906068223245	28.412	0.31372	28.412	28.388	28.701	0	1260	76	0.8615505	0.04605961	0.8615505	349.53033	0	18.68634						430	14	3	NaN	NaN	NaN	0.48931	1	11556	11556		10.052	0	1	667510	+		14177	8701	8222	8387	11173	11173					0.03505964587316157
LLFDGATN	8	Unmodified	_LLFDGATN_					0	0	0			REV__nc|ENSG00000100626|Q8N428-2|GALNT16	REV__nc|ENSG00000100626|Q8N428-2|GALNT16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.4305094946001	1	850.430509	849.423233	1.4145	0.001203	3.2585	0.0027712	4.6731	0.0039741	850.4328277735877	32.514	0.072399	32.514	32.466	32.539	0	417	88	1.3715409	0.051809072	1.3715409	279.13657	0	10.544189						141	4	2	NaN	NaN	NaN	0.73961	1	5373	5373		16.584	0	1	12228	+		14178	8825	8223	8388	11174	11174					-0.007501659192826082
LLFDVQRK	8	Unmodified	_LLFDVQRK_					0	0	0		ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.6043915353001	1	1018.60439	1017.59712	1.9637	0.0020002	-5.6205	-0.005725	-3.6568	-0.0037248	1018.598934381532	32.128	0.096531	32.128	32.104	32.201	0	156	55	1.5263584	0.03188348	1.5263584	309.82623	0	6.4718323						107	5	2	NaN	NaN	NaN	0.62311	1	9287	9287		23.85	6.0515	1	15341			14179	7633	8224	8389	11175	11175					0.08902039576844345
LLFEDVEQI	9	Unmodified	_LLFEDVEQI_					0	0	0			REV__nc|ENSG00000005156|P49916-4|LIG3	REV__nc|ENSG00000005156|P49916-4|LIG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5775676623	1	1105.57757	1104.57029	1.0753	0.0011888	-5.6726	-0.0062715	-4.5973	-0.0050827	1105.5697016145784	35.312	0.072411	35.312	35.312	35.384	-4.5776E-05	84	55	1.5688156	0.03179586	1.5672961	318.10895	0	6.447235						92	4	2	NaN	NaN	NaN	0.59509	1	12699	12699		5.6942	0	1	8046.2	+		14180	8357	8225	8390	11176	11176					0.02218886175000989
LLFGAVAV	8	Unmodified	_LLFGAVAV_					0	0	0			REV__ENSG00000196517|ENST00000372310|SLC6A9	REV__ENSG00000196517|ENST00000372310|SLC6A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4869021615001	1	789.486902	788.479626	1.9508	0.0015401	-8.0002	-0.0063161	-6.0494	-0.0047759	789.4802142228268	57.045	0.072102	57.045	57.021	57.093	0	372	121	1.3983358	0.0714494	1.3983358	284.94	0	14.559296						265	4	3	NaN	NaN	NaN	0.83849	1	4612	4612		4.0537	0	1	33042	+		14181	11107	8226	8391	11177	11177					0.07692506708042401
LLFGAVAV	8	Unmodified						0	0	0			REV__ENSG00000196517|ENST00000372310|SLC6A9	REV__ENSG00000196517|ENST00000372310|SLC6A9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.486902	788.479626	1.9508	0.0015401	-8.0002	-0.0063161	-6.0494	-0.0047759	789.4802142228268	57.045	0.072102	57.045	57.021	57.093	0	372	121	1.3983358	0.0714494	1.3983358	284.94		14.559296	0.0012322	-0.00057747	-0.00013268	NaN	4.0537	265	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33042	+		14182	11107	8226	8391							0.07692506708042401
LLFLLKRKL	9	Unmodified	_LLFLLKRKL_					0	0	0			REV__chr1:197144100-197146141|494|10.03|0.52|4.28|-|1|ASPM,ASPM|1	REV__chr1:197144100-197146141|494|10.03|0.52|4.28|-|1|ASPM,ASPM|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1143.7976120346	1	1143.79761	1142.79034	3.595	0.0041119	-8.3314	-0.0095294	-4.7364	-0.0054175	1143.7877960172848	53.779	0.25011	53.779	53.626	53.876	0	237	1144	1.4784646	0.68554235	1.4784646	299.66467	0	138.95012						8607	10	3	NaN	NaN	NaN	0.68801	1	14565	14565		0.23014	0	1	3018600	+		14183	8202	8227	8392	11178	11178					0.2246520136388881
LLFMIRGVW	9	Unmodified	_LLFMIRGVW_					0	0	0		ENST00000577511.1_2_17:72466240-72466369:+|nuORF	ENST00000577511.1_2_17:72466240-72466369:+|nuORF	ENST00000577511.1_2_17:72466240-72466369:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.88792872370004	3	378.887929	1133.64196	2.2366	0.00084741	7.1177	0.0026968	9.3543	0.0035442	378.89136547353314	23.248	0.048218	23.248	23.224	23.272	0	1413	25	0.7673241	0.014823079	0.7673241	466.6134	0	9.014008						28	3	2	NaN	NaN	NaN	0.68748	1	14238	14238		0.094767	0.015302	1	2062.7			14184	7666	8228	8393	11179	11179					0.08048147118529414
LLFMLLCII	9	Unmodified	_LLFMLLCII_					0	0	0			REV__ENST00000314666.10_1_17:8172582-8172783:+|nuORF	REV__ENST00000314666.10_1_17:8172582-8172783:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8237922510501	2	539.823792	1077.63303	1.276	0.00068883	-10.224	-0.0055194	-8.9483	-0.0048305	539.8186194833859	32.08	0.14478	32.08	32.032	32.177	0	1227	70	0.88180584	0.042329073	0.88180584	357.7139	0	17.171234						192	7	3	NaN	NaN	NaN	0.26823	1	11879	11879		20.952	0.39703	1	31442	+		14185	11700	8229	8394	11180	11180					0.09732037437856889
LLFSLEPK	8	Unmodified	_LLFSLEPK_					0	0	0		ENST00000484875.5_1_20:46415145-46415340:-|nuORF	ENST00000484875.5_1_20:46415145-46415340:-|nuORF	ENST00000484875.5_1_20:46415145-46415340:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5607953861	1	946.560795	945.553519	1.1734	0.0011107	3.7025	0.0035046	4.8758	0.0046153	946.563370216993	32.056	0.072384	32.056	32.008	32.08	0	252	88	1.4695803	0.051578164	1.4695803	298.60486	0	10.480194						100	4	2	NaN	NaN	NaN	0.81251	1	6977	6977		7.5404	0	1	9788.2			14186	7230	8230	8395	11181	11181					0.07856430079709753
LLFSNMEECN	10	Unmodified	_LLFSNMEECN_					0	0	0			REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|10|3|sense	REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|10|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.50722484793334	3	400.507225	1198.49985	0.88217	0.00035332	-4.5425	-0.0018193	-3.6603	-0.001466	400.83973203729613	32.683	0.096519	32.683	32.635	32.732	0	1488	49	0.7209441	0.029717028	0.7209441	438.12488	0	18.059357						97	5	2	NaN	NaN	NaN	0.73444	1	16409	16409		2.7042	1.7165	1	9298.4	+		14187	13032	8231	8396	11182	11182					-0.0914647847660035
LLFVLFLF	8	Unmodified	_LLFVLFLF_					0	0	0			REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.6277527393001	1	1011.62775	1010.62048	1.5285	0.0015463	-3.1981	-0.0032352	-1.6695	-0.0016889	1011.6248034538586	34.734	0.26532	34.734	34.638	34.903	0	165	91	1.5210435	0.053195596	1.5210435	308.7759	0	10.798828						205	12	2	NaN	NaN	NaN	0.60626	1	9014	9014		24.901	0	1	16942	+		14188	10127	8232	8397	11183	11183					0.11559085361466259
LLFYLEMQ	8	Unmodified	_LLFYLEMQ_					0	0	0		ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7753536145001	2	528.775354	1055.53615	1.5781	0.00083449	-11.095	-0.0058666	-9.5166	-0.0050321	528.7695282279986	16.323	0.16784	16.31	16.262	16.43	-0.012995	1287	43	0.8449601	0.025819898	0.84344065	342.8576	0	10.476868						147	8	3	NaN	NaN	NaN	0.6053	1	10658	10658		24.961	1.8434	1	24757			14189	1348	8233	8398	11184	11184					0.010607664823965024
LLGALLVL	8	Unmodified	_LLGALLVL_					0	0	0		tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.5651524825001	1	811.565152	810.557876	1.4027	0.0011384	-0.10749	-8.7236E-05	1.2952	0.0010511	811.5649825737536	35.77	0.19275	35.77	35.722	35.915	0.00053024	423	130	1.3679651	0.07695949	1.3664457	278.62134	0	15.674805						505	9	4	NaN	NaN	NaN	0.30174	1	4805	4805		41.978	0	1	162220			14190	13807	8234	8399	11185	11185					0.1450193929327952
LLGALLVL	8	Unmodified						0	0	0		tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	tr|U7SPX7|U7SPX7_FUSNU34kDamembraneantigenOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01655PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	811.565152	810.557876	1.8225	0.0014791	-0.76787	-0.00062318	1.0547	0.00085593	811.5642536341578	35.771	0.217	35.771	35.723	35.94	0	426	121	1.3661768	0.07157886	1.3661768	278.2571		14.578888	0.00050888	-0.00026882	-0.0001344	NaN	41.978	505	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170610			14191	13807	8234	8399							0.1450193929327952
LLGAPLLLTG	10	Unmodified	_LLGAPLLLTG_					0	0	0		nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.6186446160002	1	967.618645	966.611368	0.6817	0.00065963	0.4895	0.00047365	1.1712	0.0011333	967.618062563102	31.572	0.048279	31.568	31.544	31.592	-0.0044155	231	52	1.4820169	0.030187368	1.4804975	301.0377	0	6.1318665						86	3	2	NaN	NaN	NaN	0.7459	1	7383	7383		4.9097	0	1	8389.7			14192	7958	8235	8400	11186	11186					0.1267269200515102
LLGFAKGG	8	Unmodified	_LLGFAKGG_					0	0	0			REV__ENST00000472942.5_1_9:133972016-133983293:+|nuORF	REV__ENST00000472942.5_1_9:133972016-133983293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	762.4508510062002	1	762.450851	761.443575	1.5689	0.0011962	4.9172	0.0037492	6.4861	0.0049454	762.4544449863845	37.816	0.28854	37.819	37.747	38.036	0.0028229	477	76	1.3357477	0.044805884	1.3342283	272.35162	0	9.135681						361	13	3	NaN	NaN	NaN	0.83849	1	4155	4155		4.0537	0	1	52300	+		14193	9427	8236	8401	11187	11187					0.05331049531196186
LLGGGGHT	8	Unmodified	_LLGGGGHT_					0	0	0		ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3784143446	1	711.378414	710.371138	1.3037	0.00092745	-4.537	-0.0032275	-3.2333	-0.0023001	711.3756170904743	36.589	0.1685	36.591	36.543	36.711	0.0016747	696	46	1.2044523	0.027082562	1.2029328	245.89346	0	5.5289917						103	8	2	NaN	NaN	NaN	0.84876	1	3372	3372		0.39566	0	1	7978			14194	7748	8237	8402	11188	11188					0.004367154576016219
LLGGTSSK	8	Unmodified	_LLGGTSSK_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	762.4355948725001	1	762.435595	761.428318	1.3537	0.0010321	6.1464	0.0046863	7.5001	0.0057183	762.4403411817523	28.652	0.12066	28.644	28.62	28.74	-0.0083485	540	49	1.2980826	0.028729439	1.2965631	264.672	0	5.8577576						138	6	2	NaN	NaN	NaN	0.81756	1	4154	4154		6.8632	1.9535	1	14383			14195	14013	8238	8403	11189	11189					0.038061379433429465
LLGHGGGG	8	Unmodified	_LLGHGGGG_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3521995941002	1	667.3522	666.344923	2.9909	0.001996	5.7849	0.0038606	8.7758	0.0058566	667.355052080665	30.945	0.072405	30.94	30.915	30.988	-0.0050716	753	34	1.1701111	0.019901037	1.1685916	239.1809	0	4.067917						28	4	2	NaN	NaN	NaN	0.84876	1	2404	2404		0.39566	0	1	1504.4			14196	6057	8239	8404	11190	11190					-0.0015955371385416584
LLGHGGGG	8	Unmodified						0	0	0		ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.3522	666.344923	1.2509	0.00083477	12.279	0.0081946	13.53	0.0090294	667.3606322390909	30.632	0.24134	30.632	30.56	30.801	0	720	115	1.1900014	0.06875241	1.1900014	243.2466		14.053589	-0.15379	0.00045211	0.010705	NaN	0.39566	303	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35585			14197	6057	8239	8404							-0.0015955371385416584
LLGNDYLV	8	Unmodified	_LLGNDYLV_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.75019310899995	2	453.750193	905.485833	0.28976	0.00013148	-7.3302	-0.0033261	-7.0405	-0.0031946	453.7468238000818	31.235	0.14479	31.235	31.187	31.332	0	1362	70	0.79879075	0.042535603	0.79879075	324.8143	0	17.296387						207	7	3	NaN	NaN	NaN	0.74229	1	6173	6173		16.417	0	1	34406			14198	3147	8240	8405	11191	11191					0.02930980148892104
LLGPGPGG	8	Unmodified	_LLGPGPGG_					0	0	0			REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3773517121002	1	667.377352	666.370075	0.92565	0.00061776	5.2761	0.0035211	6.2017	0.0041389	667.381185554123	31.646	0.12068	31.646	31.621	31.742	0	678	46	1.2152823	0.027065039	1.2152823	248.41411	0	5.5323334						126	6	2	NaN	NaN	NaN	0.84651	1	2500	2500		1.6704	0	1	12631	+		14199	10514	8241	8406	11192	11192					0.02354501088723282
LLGPGPGG	8	Unmodified	_LLGPGPGG_					0	0	0			REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3773517121002	1	667.377352	666.370075	0.80479	0.0005371	6.2568	0.0041756	7.0616	0.0047127	667.3811796506506	31.645	0.12066	31.64	31.616	31.737	-0.0044174	672	55	1.2188909	0.03248334	1.2173715	249.1517	0	6.639862						120	6	2	NaN	NaN	NaN	0.84651	1	2409	2409		1.6704	0	1	11977	+		14200	10514	8241	8406	11193	11193					0.02354501088723282
LLGPGPGG	8	Unmodified						0	0	0			REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.377352	666.370075	0.92565	0.00061776	5.2761	0.0035211	6.2017	0.0041389	667.381185554123	31.646	0.12068	31.646	31.621	31.742	0	678	46	1.2152823	0.027065039	1.2152823	248.41411		5.5323334	0.0027299	-0.00029282	-0.0010445	NaN	1.6704	126	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12631	+		14201	10514	8241	8406							0.02354501088723282
LLGPGPGG	8	Unmodified						0	0	0			REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	REV__LGI3|p.K56Rfs*13|1|0.26|ENSG00000168481|chr8:22156373-22156376|GCCT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.377352	666.370075	0.80479	0.0005371	6.2568	0.0041756	7.0616	0.0047127	667.3811796506506	31.645	0.12066	31.64	31.616	31.737	-0.0044174	672	55	1.2188909	0.03248334	1.2173715	249.1517		6.639862	-0.0027299	0.00036167	0.0010445	NaN	1.6704	120	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11977	+		14202	10514	8241	8406							0.02354501088723282
LLGPHGGA	8	Unmodified	_LLGPHGGA_					0	0	0			REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3991497867001	1	721.39915	720.391873	1.2275	0.00088554	-0.82811	-0.0005974	0.39942	0.00028814	721.399505599478	28.822	0.1448	28.822	28.774	28.918	0	567	70	1.2819146	0.041353703	1.2819146	261.6388	0	8.440277						209	7	3	NaN	NaN	NaN	0.83849	1	3599	3599		4.0537	0	1	21581	+		14203	11868	8242	8407	11194	11194					0.02049305837283555
LLGPHGGA	8	Unmodified						0	0	0			REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	721.39915	720.391873	1.2275	0.00088554	-0.82811	-0.0005974	0.39942	0.00028814	721.399505599478	28.822	0.1448	28.822	28.774	28.918	0	567	70	1.2819146	0.041353703	1.2819146	261.6388		8.440277	0.0045493	0.00014602	0.00075972	NaN	4.0537	209	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21581	+		14204	11868	8242	8407							0.02049305837283555
LLGPHGGA	8	Unmodified						0	0	0			REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.39915	720.391873	1.0182	0.00073455	-1.272	-0.00091765	-0.25382	-0.0001831	721.3984052672539	28.821	0.14481	28.813	28.765	28.909	-0.0083504	567	61	1.2819146	0.03595388	1.2803952	261.6388		7.338196	-0.0045493	-0.00017423	-0.00075972	NaN	4.0537	175	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21391	+		14205	11868	8242	8407							0.02049305837283555
LLGPVIGG	8	Unmodified	_LLGPVIGG_					0	0	0		ENST00000465037.5_1_7:33169206-33192318:+|nuORF	ENST00000465037.5_1_7:33169206-33192318:+|nuORF	ENST00000465037.5_1_7:33169206-33192318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.4556020331003	1	725.455602	724.448326	-0.46478	-0.00033718	7.9378	0.0057585	7.473	0.0054213	725.4610483652738	52.857	0.11987	52.857	52.833	52.952	-0.00045776	588	91	1.2693287	0.05397129	1.2678093	259.0429	0	11.014389						216	6	3	NaN	NaN	NaN	0.84651	1	3601	3601		1.6704	0	1	19161			14206	7105	8243	8408	11195	11195					0.07507933673969092
LLGSPLTEL	9	Unmodified	_LLGSPLTEL_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246302999	1	942.550625	941.543348	1.3327	0.0012562	0.74569	0.00070285	2.0784	0.001959	942.5517358900343	29.087	0.09651	29.087	29.063	29.16	0	312	73	1.433996	0.042733073	1.433996	291.39227	0	8.683472						135	5	3	NaN	NaN	NaN	0.04947	1	6857	6857		47.136	11.839	1	12169			14207	8037	8244	8409	11196	11196					0.07023822354460663
LLGSVLTL	8	Unmodified	_LLGSVLTL_					0	0	0		nc|ENSG00000204278|A6NFC5-2|TMEM235;ENSG00000204278|ENST00000421688|TMEM235	nc|ENSG00000204278|A6NFC5-2|TMEM235	nc|ENSG00000204278|A6NFC5-2|TMEM235	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.5236815983002	1	815.523682	814.516405	1.3916	0.0011349	0.11092	9.0461E-05	1.5026	0.0012254	815.5239022952084	30.534	0.096487	30.529	30.505	30.601	-0.0057545	441	46	1.3572328	0.026840687	1.3557134	276.41306	0	5.466339						99	5	2	NaN	NaN	NaN	0.27293	1	4849	4849		44.247	0	1	8778.7			14208	5872	8245	8410	11197	11197					0.10172758533963133
LLGSVLTL	8	Unmodified						0	0	0		nc|ENSG00000204278|A6NFC5-2|TMEM235;ENSG00000204278|ENST00000421688|TMEM235	nc|ENSG00000204278|A6NFC5-2|TMEM235	nc|ENSG00000204278|A6NFC5-2|TMEM235	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.523682	814.516405	1.6989	0.0013855	-0.59482	-0.00048509	1.1041	0.00090043	815.5238987699353	30.56	0.14483	30.56	30.487	30.632	0	450	52	1.3518641	0.03041935	1.3518641	275.31967		6.1951904	0.01544	-0.00032541	-0.0019246	NaN	44.247	136	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11492			14209	5872	8245	8410							0.10172758533963133
LLGTARAI	8	Unmodified	_LLGTARAI_					0	0	0		ENST00000477274.1_1_X:153276255-153284091:-|nuORF;nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	ENST00000477274.1_1_X:153276255-153284091:-|nuORF	ENST00000477274.1_1_X:153276255-153284091:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.76089518105	2	407.760895	813.507237	1.1512	0.00046943	-2.5274	-0.0010306	-1.3762	-0.00056115	407.75997144072693	20.429	0.048056	20.429	20.405	20.453	0	1470	37	0.7320868	0.02227813	0.7320868	298.19254	0	9.07428						60	3	2	NaN	NaN	NaN	0.81251	1	4938	4938		7.5404	0	1	5658.9			14210	5344	8246	8411	11198	11198					0.09302409968267966
LLGTARAI	8	Unmodified						0	0	0		ENST00000477274.1_1_X:153276255-153284091:-|nuORF;nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	ENST00000477274.1_1_X:153276255-153284091:-|nuORF	ENST00000477274.1_1_X:153276255-153284091:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	407.760895	813.507237	1.3996	0.00057072	-0.92677	-0.0003779	0.47287	0.00019282	407.7598659197182	20.477	0.048094	20.463	20.439	20.487	-0.014141	1470	43	0.7320868	0.025991142	0.73056734	298.19254		10.58667	0.017069	0.00078841	-0.00075972	NaN	7.5404	71	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6092.1			14211	5344	8246	8411							0.09302409968267966
LLGVCAGL	8	Unmodified	_LLGVCAGL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.21747459485	2	373.217475	744.420396	1.857	0.00069306	-7.0021	-0.0026133	-5.1451	-0.0019202	373.21466000428035	22.718	0.072392	22.718	22.694	22.766	0	1359	40	0.8006399	0.024036646	0.8006399	326.61636	0	9.805634						56	4	2	NaN	NaN	NaN	0.84651	1	3977	3977		1.6704	0	1	4097.2			14212	428	8247	8412	11199	11199					0.037962874221989296
LLGVSSQG	8	Unmodified	_LLGVSSQG_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.4199448083002	1	760.419945	759.412668	1.3037	0.00099135	8.2319	0.0062597	9.5356	0.007251	760.4264764825466	29.714	0.16887	29.707	29.659	29.828	-0.0070648	513	91	1.3142352	0.05383897	1.3127158	267.978	0	10.977966						321	8	3	NaN	NaN	NaN	0.59262	1	4136	4136		25.752	0	1	43544			14213	4554	8248	8413	11200	11200					0.02333851426305955
LLHAGSAK	8	Unmodified	_LLHAGSAK_					0	0	0		WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant;ENSG00000103175|ENST00000219454|WFDC1	WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant	WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.4675637029	1	796.467564	795.460287	1.1284	0.00089871	-8.845	-0.0070448	-7.7166	-0.0061461	796.4609461532522	31.38	0.16894	31.38	31.332	31.501	0	435	85	1.360811	0.050115943	1.360811	277.2519	0	10.210602						307	8	3	NaN	NaN	NaN	0.62311	1	4693	4693		23.85	0	1	47698			14214	1419	8249	8414	11201	11201					0.05437550417127568
LLHAGSAK	8	Unmodified	_LLHAGSAK_					0	0	0		WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant;ENSG00000103175|ENST00000219454|WFDC1	WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant	WFDC1|p.N33Y|1|0.17|ENSG00000103175|chr16:84295068-84295068|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.4675637029	1	796.467564	795.460287	1.096	0.0008729	-9.358	-0.0074533	-8.262	-0.0065804	796.4598666452338	31.379	0.16887	31.374	31.326	31.495	-0.0050716	435	85	1.360811	0.050105095	1.3592916	277.2519	0	10.208435						306	8	3	NaN	NaN	NaN	0.62311	1	4606	4606		23.85	0	1	49828			14215	1419	8249	8414	11202	11202					0.05437550417127568
LLHGGGAE	8	Unmodified	_LLHGGGAE_					0	0	0			REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3889790309	1	753.388979	752.381703	1.4211	0.0010707	-0.10106	-7.6138E-05	1.3201	0.00099453	753.3893115496928	20.405	0.19235	20.405	20.309	20.501	0	567	64	1.2819146	0.03774953	1.2819146	261.43106	0	7.6986084						242	9	3	NaN	NaN	NaN	0.76633	1	4103	4103		13.737	0	1	23162	+		14216	12353	8250	8415	11203	11203					-0.004393018879568444
LLHGGGAE	8	Unmodified						0	0	0			REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	753.388979	752.381703	1.4211	0.0010707	-0.10106	-7.6138E-05	1.3201	0.00099453	753.3893115496928	20.405	0.19235	20.405	20.309	20.501	0	567	64	1.2819146	0.03774953	1.2819146	261.43106		7.6986084	0.019116	6.9118E-05	-0.00013889	NaN	13.737	242	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23162	+		14217	12353	8250	8415							-0.004393018879568444
LLHGGGAE	8	Unmodified						0	0	0			REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	REV__ENST00000475762.5_1_17:56770683-56770842:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.388979	752.381703	1.5516	0.001169	-0.31567	-0.00023782	1.2359	0.00093113	753.3890315487547	20.381	0.16861	20.367	20.295	20.463	-0.014141	564	49	1.2837118	0.028753877	1.2821923	261.7976		5.864044	-0.019116	-9.2568E-05	0.00013889	NaN	13.737	177	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19292	+		14218	12353	8250	8415							-0.004393018879568444
LLHSCELIEKL	11	Unmodified	_LLHSCELIEKL_					0	0	0			REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3628557408501	2	649.362856	1296.71116	0.80057	0.00051986	5.5392	0.0035969	6.3398	0.0041168	649.366909435096	39.718	0.12056	39.718	39.694	39.815	0	1194	70	0.902037	0.042297065	0.902037	365.13943	0	17.121582						170	6	2	NaN	NaN	NaN	0.76488	1	18724	18724		2.8895	0	1	19354	+		14219	9902	8251	8416	11204	11204					0.07467141556799106
LLIAKLGG	8	Unmodified	_LLIAKLGG_					0	0	0			REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.5291013272002	1	784.529101	783.521825	1.8971	0.0014883	4.3015	0.0033746	6.1986	0.004863	784.5320739577896	56.373	0.095928	56.373	56.349	56.445	0	393	37	1.3858368	0.021434784	1.3858368	282.42358	0	4.3682556						62	5	2	NaN	NaN	NaN	0.84887	1	4550	4550		0.32989	0	1	5925.9	+		14220	11841	8252	8417	11205	11205					0.12140482116433304
LLIDGILLL	9	Unmodified	_LLIDGILLL_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.6546957713002	1	982.654696	981.647419	1.0057	0.00098825	0.66055	0.0006491	1.6662	0.0016373	982.6551371784086	38.227	0.096096	38.227	38.179	38.275	0	189	55	1.5068626	0.03192067	1.5068626	306.01862	0	6.482544						92	5	2	NaN	NaN	NaN	0.049695	1	7957	7957		47.04	2.7378	1	6990.8			14221	5388	8253	8418	11206	11206					0.15586149182001918
LLIEKIEKLL	10	Unmodified	_LLIEKIEKLL_					0	0	0			REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1211.7973372631002	1	1211.79734	1210.79006	2.043	0.0024757	3.8298	0.0046409	5.8728	0.0071166	1211.8024245577035	39.163	0.55347	39.168	39.095	39.649	0.0046806	51	154	1.5882392	0.090159655	1.5867198	321.69846	0	18.261902						1843	24	5	NaN	NaN	NaN	0.77144	1	16072	16072		2.5994	0	1	271570	+		14222	9380	8254	8419	11207	11207					0.19309736853392678
LLIMGAGG	8	Unmodified	_LLIMGAGG_					0	0	0		nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1	nc|ENSG00000105290|P51693|APLP1	nc|ENSG00000105290|P51693|APLP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.4120226589002	1	731.412023	730.404746	1.3931	0.0010189	1.9707	0.0014414	3.3638	0.0024603	731.413597952121	35.143	0.07243	35.143	35.119	35.191	-4.5776E-05	696	40	1.2044523	0.023471475	1.2029328	245.76582	0	4.7892914						74	4	2	NaN	NaN	NaN	0.83849	1	3685	3685		4.0537	0	1	5430.9			14223	1525	8255	8420	11208	11208					0.02876000905177989
LLIPAASY	8	Unmodified	_LLIPAASY_					0	0	0		ENST00000475582.5_1_2:27589580-27589796:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.24982896825	2	424.249829	846.485105	1.5956	0.00067694	-2.2226	-0.00094295	-0.62702	-0.00026601	424.2493317036515	35.53	0.45824	35.53	35.458	35.916	0	1368	295	0.7950918	0.18144637	0.7950918	323.64658	0	73.858765						2384	20	6	NaN	NaN	NaN	0.79379	1	5348	5348		10.052	0	1	2288400			14224	1998	8256	8421	11209	11209					0.05572185499852367
LLIPAASY	8	Unmodified						0	0	0		ENST00000475582.5_1_2:27589580-27589796:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	424.249829	846.485105	1.445	0.00061303	-2.3327	-0.00098965	-0.88771	-0.00037661	424.2492185131692	35.529	0.38579	35.529	35.481	35.867	0.00053024	1368	316	0.7950918	0.1944176	0.79357237	323.64658		79.13876	-0.00049464	-4.829E-05	-0.00075972	NaN	10.052	2420	17	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2181700			14225	1998	8256	8421							0.05572185499852367
LLISGILV	8	Unmodified	_LLISGILV_					0	0	0			REV__tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	REV__tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.5600671046002	1	827.560067	826.552791	1.7065	0.0014122	0.26637	0.00022044	1.9728	0.0016326	827.5602353128162	32.056	0.19307	32.056	32.008	32.201	0	408	121	1.3769034	0.071533084	1.3769034	280.3514	0	14.56488						469	9	4	NaN	NaN	NaN	0.10499	1	5105	5105		63.31	0	1	149440	+		14226	13623	8257	8422	11210	11210					0.1325763543067069
LLISGILV	8	Unmodified						0	0	0			REV__tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	REV__tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	827.560067	826.552791	1.7065	0.0014122	0.26637	0.00022044	1.9728	0.0016326	827.5602353128162	32.056	0.19307	32.056	32.008	32.201	0	408	121	1.3769034	0.071533084	1.3769034	280.3514		14.56488	0.0024367	0.00016102	-0.00013383	NaN	63.31	469	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149440	+		14227	13623	8257	8422							0.1325763543067069
LLIYAILPD	9	Unmodified	_LLIYAILPD_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.8127933658001	2	515.812793	1029.61103	2.1265	0.0010969	4.9709	0.0025641	7.0974	0.003661	515.8152084305959	14.596	0.047929	14.585	14.585	14.633	-0.011219	1248	25	0.8689189	0.014735103	0.86739945	352.69354	0	5.980957						36	3	2	NaN	NaN	NaN	0.65388	1	9578	9578		3.1533	0	1	2340.3		+	14228	179	8258	8423	11211	11211					0.09741272285282321
LLKAEEVA	8	Unmodified	_LLKAEEVA_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5087598156	1	872.50876	871.501483	1.6345	0.0014261	7.6932	0.0067124	9.3277	0.0081385	872.5152415154137	52.882	0.11972	52.882	52.835	52.954	0	354	55	1.4090419	0.032111168	1.4090419	286.653	0	6.5326233						112	6	2	NaN	NaN	NaN	0.83211	1	5687	5687		4.9097	0	1	8562.5			14229	1793	8259	8424	11212	11212					0.060592666659431416
LLKEIKEILL	10	Unmodified	_LLKEIKEILL_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1211.7973372631002	1	1211.79734	1210.79006	1.7528	0.0021241	4.2911	0.0051999	6.0439	0.007324	1211.8019314105477	39.646	0.024036	39.646	39.646	39.67	0	51	67	1.5882392	0.038845062	1.5882392	321.69843	0	7.8680725						88	2	2	NaN	NaN	NaN	0.77594	1	16744	16744		1.5054	0	1	9188.8			14230	2431	8260	8425	11213	11213					0.19309736853392678
LLKELAHI	8	Unmodified	_LLKELAHI_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5876788386	1	936.587679	935.580402	1.52	0.0014236	-2.6912	-0.0025205	-1.1712	-0.0010969	936.5849558851969	39.668	0.096386	39.673	39.649	39.746	0.0053368	894	85	1.0848607	0.050882936	1.0833412	220.46721	0	10.340515						128	5	2	NaN	NaN	NaN	0.84727	1	6606	6606		1.2418	0	1	19886			14231	4265	8261	8426	11214	11214					0.11003538690886217
LLKELAHILGF	11	Unmodified	_LLKELAHILGF_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3844484627	2	627.384448	1252.75434	1.7873	0.0011214	-2.8087	-0.0017621	-1.0213	-0.00064078	627.384179749005	39.716	0.38565	39.722	39.649	40.035	0.0053368	1188	127	0.90571284	0.07727569	0.9041934	366.763	0	31.292358						1154	17	6	NaN	NaN	NaN	0.76304	1	17088	17088		3.2116	0	1	1071700			14232	4265	8262	8427	11215	11215					0.1380769939635229
LLKEQHLW	8	Unmodified	_LLKEQHLW_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8058340009501	2	533.805834	1065.59712	0.67764	0.00036173	-0.036302	-1.9378E-05	0.64133	0.00034235	534.3074137417184	21.055	0.28892	21.041	20.945	21.234	-0.014086	1479	40	0.72651637	0.024143755	0.7249969	294.76105	0	9.795563						221	13	3	NaN	NaN	NaN	0.84455	1	11115	11115		2.7852	0	1	26805			14233	4342	8263	8428	11216	11216					0.06694039576859723
LLKLLAIP	8	Unmodified	_LLKLLAIP_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.6230017124	1	880.623002	879.615725	-0.41695	-0.00036717	-1.6364	-0.0014411	-2.0534	-0.0018083	880.6219466275751	58.458	0.24002	58.458	58.362	58.602	-0.00048065	291	46	1.446459	0.02669537	1.4449396	294.223	0	5.430084						184	11	2	NaN	NaN	NaN	0.84876	1	5678	5678		0.39566	0	1	15282	+		14234	8318	8264	8429	11217	11217					0.1711020121869069
LLKLLAIP	8	Unmodified	_LLKLLAIP_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.6230017124	1	880.623002	879.615725	-0.1729	-0.00015226	-1.5848	-0.0013956	-1.7577	-0.0015478	880.6214886665323	58.003	0.096004	58.002	57.978	58.074	-0.00051117	288	199	1.4482387	0.117703676	1.4467193	294.585	0	23.942017						363	5	5	NaN	NaN	NaN	0.84876	1	5679	5679		0.39566	0	1	141270	+		14235	8318	8264	8429	11218	11218					0.1711020121869069
LLKLLAIP	8	Unmodified						0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.623002	879.615725	1.8782	0.001654	-4.398	-0.0038729	-2.5197	-0.0022189	880.6185909195002	58.485	0.07185	58.485	58.485	58.557	0	294	37	1.4446791	0.021361947	1.4446791	293.86096		4.345215	0.013482	-0.0018637	-0.00013022	NaN	0.39566	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4119.8	+		14236	8318	8264	8429							0.1711020121869069
LLKLLAIP	8	Unmodified						0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	880.623002	879.615725	-0.1729	-0.00015226	-1.5848	-0.0013956	-1.7577	-0.0015478	880.6214886665323	58.003	0.096004	58.002	57.978	58.074	-0.00051117	288	199	1.4482387	0.117703676	1.4467193	294.585		23.942017	-0.0013901	0.00094637	0.00013013	NaN	0.39566	363	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141270	+		14237	8318	8264	8429							0.1711020121869069
LLKLLAIP	8	Unmodified						0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	880.623002	879.615725	-0.41695	-0.00036717	-1.6364	-0.0014411	-2.0534	-0.0018083	880.6219466275751	58.458	0.24002	58.458	58.362	58.602	-0.00048065	291	46	1.446459	0.02669537	1.4449396	294.223		5.430084	-0.013482	0.00056815	0.00013022	NaN	0.39566	184	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15282	+		14238	8318	8264	8429							0.1711020121869069
LLLALVTLVP	10	Unmodified	_LLLALVTLVP_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	351.2423659781334	3	351.242366	1050.70527	3.8656	0.0013578	3.2632	0.0011462	7.1288	0.0025039	351.24371997677486	15.028	0.048146	15.016	15.016	15.064	-0.011737	1401	19	0.77473325	0.011111319	0.7732138	471.5647	0	6.763214						18	3	2	NaN	NaN	NaN	0.78111	1	10448	10448		0.24776	0	1	924.03	+		14239	8892	8265	8430	11219	11219					0.18194411107424457
LLLAVSGK	8	Unmodified	_LLLAVSGK_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.5240159493002	1	800.524016	799.516739	2.1065	0.0016863	3.8999	0.003122	6.0064	0.0048083	800.5273813087974	56.373	0.11992	56.373	56.349	56.469	0	360	145	1.405474	0.085748434	1.405474	286.3268	0	17.468872						300	6	4	NaN	NaN	NaN	0.84782	1	4746	4746		0.92586	0.5302	1	59880			14240	1656	8266	8431	11220	11220					0.10896178253813105
LLLAVTAPT	9	Unmodified	_LLLAVTAPT_					0	0	0			REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	REV__ENST00000418273.2_1_10:88730536-88730896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5607953861	1	898.560795	897.553519	1.8026	0.0016197	-4.1105	-0.0036935	-2.3079	-0.0020737	898.559521402036	55.725	0.072357	55.725	55.701	55.773	0	171	61	1.5174994	0.03545618	1.5174994	308.57825	0	7.2099						99	4	3	NaN	NaN	NaN	0.65818	1	6029	6029		2.7852	0	1	7068	+		14241	12095	8267	8432	11221	11221					0.10064430079705744
LLLFCAVKI	9	Unmodified	_LLLFCAVKI_					0	0	0			REV__PIGW|p.D335N|1|0.15|ENSG00000277161|chr17:36538104-36538104|G/A|missense_variant	REV__PIGW|p.D335N|1|0.15|ENSG00000277161|chr17:36538104-36538104|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.3197313284	2	510.319731	1018.62491	0.86284	0.00044032	0.30423	0.00015526	1.1671	0.00059558	510.32003509147495	28.073	0.072386	28.064	28.016	28.088	-0.0089779	1260	76	0.8615505	0.046044707	0.8600311	349.7525	0	18.69217						173	4	3	NaN	NaN	NaN	0.53206	1	9141	9141		8.2903	0	1	28866	+		14242	11426	8268	8433	11222	11222					0.11634226512717305
LLLFPLAAPP	10	Unmodified	_LLLFPLAAPP_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.6550301222999	1	1051.65503	1050.64775	1.4759	0.0015521	-5.7839	-0.0060826	-4.308	-0.0045305	1051.6485076474687	37.479	0.09639	37.482	37.458	37.555	0.0028229	237	46	1.4784646	0.026641488	1.4769452	299.97833	0	5.4055176						102	5	2	NaN	NaN	NaN	0.77832	1	10446	10446		0.92586	0	1	8139.7	+		14243	9443	8269	8434	11223	11223					0.12445568901830484
LLLGEPGG	8	Unmodified	_LLLGEPGG_					0	0	0			REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4297812131002	1	755.429781	754.422505	1.6042	0.0012118	6.718	0.0050749	8.3221	0.0062868	755.4357970503085	32.611	0.048286	32.611	32.587	32.635	0	558	37	1.2873057	0.021563172	1.2873057	262.51776	0	4.397339						37	3	2	NaN	NaN	NaN	0.84651	1	4151	4151		1.6704	0	1	2349.2	+		14244	12243	8270	8435	11224	11224					0.03547039431680332
LLLGNLRT	8	Unmodified	_LLLGNLRT_					0	0	0		ENST00000394531.3_1_11:64044386-64051659:-|nuORF	ENST00000394531.3_1_11:64044386-64051659:-|nuORF	ENST00000394531.3_1_11:64044386-64051659:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.2872771070501	2	450.287277	898.560001	1.6566	0.00074593	-0.84687	-0.00038133	0.80969	0.0003646	450.2857589795638	17.117	0.024044	17.117	17.117	17.141	0	1383	25	0.7858409	0.014805436	0.7858409	319.58524	0	6.021057						30	2	2	NaN	NaN	NaN	0.84512	1	6043	6043		2.4615	0	1	1940.5			14245	6777	8271	8436	11225	11225					0.10666368031104412
LLLGNLRT	8	Unmodified						0	0	0		ENST00000394531.3_1_11:64044386-64051659:-|nuORF	ENST00000394531.3_1_11:64044386-64051659:-|nuORF	ENST00000394531.3_1_11:64044386-64051659:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	450.287277	898.560001	2.5572	0.0011515	1.7617	0.00079326	4.3189	0.0019447	450.2883699829122	17.138	0.04804	17.124	17.1	17.149	-0.013569	1383	25	0.7858409	0.014805436	0.7843215	319.58524		6.021057	0.0035352	0.0010007	-0.00075972	NaN	2.4615	32	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2246			14246	6777	8271	8436							0.10666368031104412
LLLGVLPLQ	9	Unmodified	_LLLGVLPLQ_					0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.6393800581001	1	965.63938	964.632104	1.7472	0.0016872	-0.59019	-0.00056991	1.157	0.0011172	965.6388974522929	52.14	0.16772	52.14	52.068	52.236	0	177	67	1.5139546	0.039001822	1.5139546	307.53397	0	7.9225464						200	8	3	NaN	NaN	NaN	0.36886	1	7479	7479		15.013	0	1	23076	+		14247	9598	8272	8437	11226	11226					0.1483728238479216
LLLGVLPLQ	9	Unmodified						0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	965.63938	964.632104	1.7472	0.0016872	-0.59019	-0.00056991	1.157	0.0011172	965.6388974522929	52.14	0.16772	52.14	52.068	52.236	0	177	67	1.5139546	0.039001822	1.5139546	307.53397		7.9225464	0.00092214	-0.001563	-0.0010127	NaN	15.013	200	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23076	+		14248	9598	8272	8437							0.1483728238479216
LLLGVLPLQ	9	Unmodified						0	0	0			REV__ENSG00000134827|ENST00000257264|TCN1	REV__ENSG00000134827|ENST00000257264|TCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	965.63938	964.632104	-0.49096	-0.00047409	2.3318	0.0022517	1.8409	0.0017776	965.6416822046526	52.138	0.14369	52.138	52.09	52.234	-0.00031662	171	73	1.5174994	0.042547345	1.51598	308.25403		8.642792	-0.00092214	0.0012586	0.0010127	NaN	15.013	231	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26012	+		14249	9598	8272	8437							0.1483728238479216
LLLKEMLERL	10	Unmodified	_LLLKEMLERL_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1;nc|ENSG00000125864|Q12934-2|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1257.7599058993	1	1257.75991	1256.75263	1.8764	0.00236	1.1826	0.0014875	3.059	0.0038475	1257.761791664775	41.017	0.14418	41.017	40.873	41.017	0	618	100	1.2513325	0.059473157	1.2513325	253.35323	0	12.041351						170	7	2	NaN	NaN	NaN	0.76892	1	17935	17935		3.2116	0.61216	1	17375			14250	2479	8273	8438	11227	11227					0.13452322316106802
LLLLMSSHL	9	Unmodified	_LLLLMSSHL_					0	0	0		LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.8044454049501	2	513.804445	1025.59434	1.7202	0.00088385	-8.4309	-0.0043319	-6.7107	-0.003448	513.8002186745827	18.506	0.095926	18.492	18.468	18.564	-0.01395	1269	70	0.8560222	0.042416096	0.85450274	347.47678	0	17.21756						210	5	3	NaN	NaN	NaN	0.094712	1	9416	9416		36.586	2.8882	1	22387			14251	7865	8274	8439	11228	11228					0.08256448127690419
LLLLMSSHL	9	Unmodified						0	0	0		LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.804445	1025.59434	2.5774	0.0013243	-9.5896	-0.0049272	-7.0122	-0.0036029	513.7998347183083	18.484	0.071892	18.484	18.46	18.532	0	1269	73	0.8560222	0.044262707	0.8560222	347.4768		17.967133	-0.0036715	-0.00064501	0.00075972	NaN	36.586	195	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20437			14252	7865	8274	8439							0.08256448127690419
LLLMDAAII	9	Unmodified	_LLLMDAAII_					0	0	0			REV__IPP|p.Q118L|1|0.27|ENSG00000197429|chr1:45741272-45741272|T/A|missense_variant	REV__IPP|p.Q118L|1|0.27|ENSG00000197429|chr1:45741272-45741272|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5798162687	1	972.579816	971.57254	1.1594	0.0011276	-3.0917	-0.003007	-1.9323	-0.0018793	972.577190161478	33.721	0.048286	33.721	33.697	33.745	0	285	43	1.4500183	0.02490902	1.4500183	294.51675	0	5.059326						57	3	2	NaN	NaN	NaN	0.62619	1	7662	7662		4.4131	0	1	4233.9	+		14253	13024	8275	8440	11229	11229					0.08561643379107409
LLLPQSLH	8	Unmodified	_LLLPQSLH_					0	0	0			REV__ENST00000511604.5_1_3:131753576-131754217:-|nuORF	REV__ENST00000511604.5_1_3:131753576-131754217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5563787102002	1	920.556379	919.549102	1.7383	0.0016002	1.3191	0.0012143	3.0573	0.0028144	920.5574497116844	55.845	0.072021	55.845	55.821	55.893	0	300	61	1.4411188	0.0356071	1.4411188	292.94064	0	7.2379456						117	4	3	NaN	NaN	NaN	0.84727	1	6413	6413		1.2418	0.31598	1	16518	+		14254	12147	8276	8441	11230	11230					0.08610965656805547
LLLSKGAC	8	Unmodified	_LLLSKGAC_					0	0	0			REV__ENST00000488380.5_1_3:52514663-52514885:+|nuORF	REV__ENST00000488380.5_1_3:52514663-52514885:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4647865109001	1	804.464787	803.45751	1.5071	0.0012124	2.0609	0.0016579	3.568	0.0028703	804.4656961492127	32.779	0.12064	32.776	32.751	32.872	-0.0031052	486	46	1.3303722	0.02687788	1.3288528	271.00446	0	5.475189						78	6	2	NaN	NaN	NaN	0.72043	1	4696	4696		17.78	0	1	6458.2	+		14255	12442	8277	8442	11231	11231					0.04791958967973642
LLLSKGAC	8	Unmodified	_LLLSKGAC_					0	0	0			REV__ENST00000488380.5_1_3:52514663-52514885:+|nuORF	REV__ENST00000488380.5_1_3:52514663-52514885:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4647865109001	1	804.464787	803.45751	1.7855	0.0014363	4.0249	0.0032379	5.8103	0.0046742	804.4686591013032	32.706	0.048275	32.703	32.679	32.727	-0.0031052	480	43	1.3339561	0.025084615	1.3324367	271.7345	0	5.1098633						48	3	2	NaN	NaN	NaN	0.72043	1	4697	4697		17.78	0	1	3924.2	+		14256	12442	8277	8442	11232	11232					0.04791958967973642
LLLSMGGT	8	Unmodified	_LLLSMGGT_					0	0	0		CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant;ENSG00000267631|ENST00000301407|CGB1;ENSG00000104818|ENST00000359342|CGB2;ENSG00000213030|ENST00000448456|CGB8;ENSG00000196337|ENST00000684222|CGB7;ENSG00000189052|ENST00000301408|CGB5;ENSG00000104827|ENST00000357383|CGB3;nc|ENSG00000213030|P0DN86-2|CGB3;nc|ENSG00000267631|A6NKQ9|CGB1	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.4331520315003	1	791.433152	790.425876	0.22262	0.00017619	2.8298	0.0022396	3.0524	0.0024158	791.4336911551646	54.234	0.11982	54.233	54.209	54.329	-0.00061798	390	37	1.3876231	0.021434784	1.3861036	282.7451	0	4.3676147						75	6	2	NaN	NaN	NaN	0.84455	1	4547	4547		2.7852	1.1148	1	4824.6			14257	101	8278	8443	11233	11233					0.02227966214047683
LLLSMGGT	8	Unmodified						0	0	0		CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant;ENSG00000267631|ENST00000301407|CGB1;ENSG00000104818|ENST00000359342|CGB2;ENSG00000213030|ENST00000448456|CGB8;ENSG00000196337|ENST00000684222|CGB7;ENSG00000189052|ENST00000301408|CGB5;ENSG00000104827|ENST00000357383|CGB3;nc|ENSG00000213030|P0DN86-2|CGB3;nc|ENSG00000267631|A6NKQ9|CGB1	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	791.433152	790.425876	1.9507	0.0015438	0.36566	0.00028939	2.3163	0.0018332	791.4324064774713	54.236	0.071865	54.236	54.212	54.284	0	393	37	1.3858368	0.021437168	1.3858368	282.38113		4.3680725	0.0013003	-0.00061448	-0.00013335	NaN	2.7852	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5746.2			14258	101	8278	8443							0.02227966214047683
LLLSSGDG	8	Unmodified	_LLLSSGDG_					0	0	0			REV__ENST00000527370.5_1_11:67259506-67263940:-|nuORF	REV__ENST00000527370.5_1_11:67259506-67263940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.4039603931002	1	761.40396	760.396684	1.71	0.001302	0.53765	0.00040937	2.2477	0.0017114	761.4045360056664	54.524	0.12048	54.524	54.5	54.62	0	540	52	1.2980826	0.030529857	1.2980826	264.67838	0	6.2250366						89	6	2	NaN	NaN	NaN	0.84727	1	4221	4221		1.2418	0	1	7803.9	+		14259	9082	8279	8444	11234	11234					0.006901451894009369
LLLSSGDG	8	Unmodified						0	0	0			REV__ENST00000527370.5_1_11:67259506-67263940:-|nuORF	REV__ENST00000527370.5_1_11:67259506-67263940:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	761.40396	760.396684	1.71	0.001302	0.53765	0.00040937	2.2477	0.0017114	761.4045360056664	54.524	0.12048	54.524	54.5	54.62	0	540	52	1.2980826	0.030529857	1.2980826	264.67838		6.2250366	0	0	0	NaN	1.2418	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7803.9	+		14260	9082	8279	8444							0.006901451894009369
LLLSVSTY	8	Unmodified	_LLLSVSTY_					0	0	0		sp|P06927|VE5_HPV16ProbableproteinE5OS=Humanpapillomavirustype16OX=333760GN=E5PE=1SV=2	sp|P06927|VE5_HPV16ProbableproteinE5OS=Humanpapillomavirustype16OX=333760GN=E5PE=1SV=2	sp|P06927|VE5_HPV16ProbableproteinE5OS=Humanpapillomavirustype16OX=333760GN=E5PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.5135108425002	1	895.513511	894.506234	0.75874	0.00067946	1.3937	0.0012481	2.1524	0.0019275	895.5151887967788	35.168	0.096527	35.168	35.144	35.241	0	447	43	1.3536539	0.02505529	1.3536539	275.27496	0	5.095154						95	5	2	NaN	NaN	NaN	0.84692	1	5991	5991		1.4396	0	1	7324.7			14261	13691	8280	8445	11235	11235					0.05476150808726743
LLLTKGQGIH	10	Unmodified	_LLLTKGQGIH_					0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3322159269501	2	540.332216	1078.64988	1.89	0.0010212	-0.81594	-0.00044088	1.074	0.00058033	540.3317149486369	26.432	0.048281	26.432	26.408	26.456	0	1206	31	0.894683	0.018389046	0.894683	362.9333	0	7.4596252						57	3	2	NaN	NaN	NaN	0.64158	1	11932	11932		12.049	2.3027	1	8685.6	+		14262	8926	8281	8446	11236	11236					0.11369997639667417
LLLTKGQGIH	10	Unmodified						0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.332216	1078.64988	1.89	0.0010212	-0.81594	-0.00044088	1.074	0.00058033	540.3317149486369	26.432	0.048281	26.432	26.408	26.456	0	1206	31	0.894683	0.018389046	0.894683	362.9333		7.4596252	-0.0063642	-0.00033375	0.0016792	NaN	12.049	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8685.6	+		14263	8926	8281	8446							0.11369997639667417
LLLTKGQGIH	10	Unmodified						0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.332216	1078.64988	1.5212	0.00082193	0.07691	4.1557E-05	1.5981	0.00086349	540.3325738638745	26.456	0.072392	26.445	26.421	26.493	-0.011137	1209	31	0.892844	0.018389046	0.8913246	362.1873		7.4595947	0.0063642	0.00063112	-0.0016792	NaN	12.049	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7313.8	+		14264	8926	8281	8446							0.11369997639667417
LLLVSGSS	8	Unmodified	_LLLVSGSS_					0	0	0			REV__nc|ENSG00000167741|Q6P531-2|GGT6	REV__nc|ENSG00000167741|Q6P531-2|GGT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4559959636002	1	775.455996	774.448719	1.791	0.0013889	5.2713	0.0040876	7.0623	0.0054765	775.4593089755159	46.677	0.095871	46.677	46.605	46.701	0	348	49	1.412609	0.028534174	1.412609	287.93762	0	5.816223						79	5	2	NaN	NaN	NaN	0.84887	1	4429	4429		0.32989	0	1	4765.7	+		14265	10478	8282	8447	11237	11237					0.05247308603156853
LLLWLMPP	8	Unmodified	_LLLWLMPP_					0	0	0			REV__ENSG00000177558|ENST00000324675|FAM187B	REV__ENSG00000177558|ENST00000324675|FAM187B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.79334940240005	2	491.793349	981.572146	1.3704	0.00067396	-10.08	-0.0049573	-8.7096	-0.0042833	491.788143991373	25.129	0.07233	25.117	25.069	25.141	-0.012011	1428	37	0.7580582	0.022244275	0.75653875	307.8939	0	9.03479						66	4	2	NaN	NaN	NaN	0.83849	1	7776	7776		4.0537	0	1	6371.1	+		14266	10767	8283	8448	11238	11238					0.08062268449918975
LLMEVLVLA	9	Unmodified	_LLMEVLVLA_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.6111163971	1	1000.61112	999.60384	1.4205	0.0014214	-0.51227	-0.00051258	0.90822	0.00090878	1000.6107830269148	39.765	0.14474	39.77	39.722	39.866	0.0053368	150	49	1.5299006	0.028334856	1.5283811	310.61996	0	5.752899						139	7	2	NaN	NaN	NaN	0.094712	1	8413	8413		36.586	0	1	12105			14267	662	8284	8449	11239	11239					0.10402216413194765
LLMINTMILF	10	Unmodified	_LLMINTMILF_					0	0	0		ENST00000551983.1_1_12:104336353-104336419:+|nuORF	ENST00000551983.1_1_12:104336353-104336419:+|nuORF	ENST00000551983.1_1_12:104336353-104336419:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8427132857	2	604.842713	1207.67087	1.0905	0.00065959	-7.6144	-0.0046055	-6.5239	-0.0039459	605.3408596010396	43.705	0.07188	43.705	43.705	43.777	0	1188	43	0.90571284	0.025722384	0.90571284	366.91223	0	10.42038						65	4	2	NaN	NaN	NaN	0.44258	1	16679	16679		21.835	1.2795	1	4063.5			14268	7551	8285	8450	11240	11240					0.0753450363263255
LLMLLLAH	8	Unmodified	_LLMLLLAH_					0	0	0		ENST00000342572.12_1_17:80401329-80401857:-|nuORF	ENST00000342572.12_1_17:80401329-80401857:-|nuORF	ENST00000342572.12_1_17:80401329-80401857:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5746713113001	1	923.574671	922.567395	1.9109	0.0017648	-10.859	-0.010029	-8.9484	-0.0082646	923.5641828225704	54.452	0.12019	54.452	54.428	54.548	0	345	58	1.4143922	0.0338825	1.4143922	287.49402	0	6.8870544						158	6	3	NaN	NaN	NaN	0.83849	1	6455	6455		4.0537	0	1	35743			14269	6544	8286	8451	11241	11241					0.1030138430714942
LLMLWFIG	8	Unmodified	_LLMLWFIG_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.563772274	1	992.563772	991.556496	1.7263	0.0017135	-0.39237	-0.00038946	1.3339	0.001324	992.5636108221635	34.758	0.072433	34.758	34.758	34.831	0	204	91	1.4979934	0.05324638	1.4979934	304.17532	0	10.81192						131	4	2	NaN	NaN	NaN	0.83849	1	8285	8285		4.0537	0.90034	1	10324			14270	3410	8287	8452	11242	11242					0.060379819328545636
LLMLWFIG	8	Unmodified						0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.563772	991.556496	1.5464	0.0015349	-2.3763	-0.0023586	-0.82992	-0.00082375	992.5619140705815	34.685	0.12047	34.684	34.684	34.804	-0.0006485	198	103	1.5015416	0.060333133	1.5000222	304.89584		12.250946	-0.03716	-0.001152	0.0010144	NaN	4.0537	181	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12618			14271	3410	8287	8452							0.060379819328545636
LLMMSEDKG	9	Unmodified	_LLMMSEDKG_					0	0	0		nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF;nc|ENSG00000160460|Q9H254-5|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	nc|ENSG00000160460|Q9H254-4|SPTBN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.24610303605	2	512.246103	1022.47765	1.1157	0.00057152	-1.9846	-0.0010166	-0.86888	-0.00044508	512.244948254893	33.431	0.12067	33.431	33.383	33.504	0	1293	55	0.84127116	0.03321141	0.84127116	341.5028	0	13.481689						147	6	3	NaN	NaN	NaN	0.39244	1	9453	9453		14.042	1.0388	1	16165			14272	4061	8288	8453	11243	11243					-0.032686581543771354
LLMNTFVE	8	Unmodified	_LLMNTFVE_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4964805698	1	966.496481	965.489204	1.3514	0.0013061	-5.2115	-0.0050369	-3.8601	-0.0037308	966.4918384309829	32.442	0.12064	32.442	32.394	32.514	0	264	91	1.4624695	0.05338788	1.4624695	297.07193	0	10.844696						159	6	2	NaN	NaN	NaN	0.65542	1	7498	7498		21.835	2.7167	1	11197	+		14273	10510	8289	8454	11244	11244					0.005079069312500906
LLNASFGG	8	Unmodified	_LLNASFGG_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4093801220002	1	778.40938	777.402104	2.2457	0.0017481	-0.44721	-0.00034812	1.7985	0.0014	778.4085209280128	26.07	0.14482	26.059	25.987	26.131	-0.011137	534	121	1.3016734	0.07186961	1.300154	265.30765	0	14.648499						305	7	2	NaN	NaN	NaN	0.63138	1	4384	4384		23.334	2.779	1	34340	+		14274	13399	8290	8455	11245	11245					0.004498687718751171
LLNSCAAV	8	Unmodified	_LLNSCAAV_					0	0	0		ENST00000481519.5_1_7:148975234-148975309:+|nuORF	ENST00000481519.5_1_7:148975234-148975309:+|nuORF	ENST00000481519.5_1_7:148975234-148975309:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.4127509404	1	790.412751	789.405474	1.7991	0.001422	-5.2279	-0.0041322	-3.4288	-0.0027101	790.4089874519632	27.349	0.096569	27.339	27.315	27.411	-0.010126	492	37	1.3267875	0.021510243	1.325268	270.3551	0	4.3830566						66	5	2	NaN	NaN	NaN	0.80692	1	4536	4536		8.2903	0	1	4407.1			14275	7204	8291	8456	11246	11246					0.0023479555419498865
LLPAHIAM	8	Unmodified	_LLPAHIAM_					0	0	0		ENST00000513693.1_1_5:7690761-7690995:+|nuORF;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENST00000513693.1_1_5:7690761-7690995:+|nuORF	ENST00000513693.1_1_5:7690761-7690995:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.25184872844994	2	433.251849	864.489145	0.73165	0.00031699	5.8417	0.0025309	6.5733	0.0028479	433.25407926167014	35.289	0.072357	35.289	35.289	35.361	0	1407	25	0.77102906	0.014816642	0.77102906	313.74744	0	6.0292053						36	4	2	NaN	NaN	NaN	0.84651	1	5592	5592		1.6704	0.2308	1	1959.9			14276	13	8292	8457	11247	11247					0.0514795172190361
LLPAQGPG	8	Unmodified	_LLPAQGPG_					0	0	0		ENST00000362021.8_1_11:47437613-47437712:+|nuORF	ENST00000362021.8_1_11:47437613-47437712:+|nuORF	ENST00000362021.8_1_11:47437613-47437712:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.4301155641001	1	752.430116	751.422839	1.5289	0.0011504	6.5071	0.0048961	8.036	0.0060465	752.4338625933021	32.683	0.24128	32.683	32.635	32.876	0	555	145	1.2891023	0.086289644	1.2891023	262.9029	0	17.598114						487	11	2	NaN	NaN	NaN	0.76633	1	4091	4091		13.737	3.6855	1	156490			14277	6613	8293	8458	11248	11248					0.037184591515256216
LLPAQGPG	8	Unmodified	_LLPAQGPG_					0	0	0		ENST00000362021.8_1_11:47437613-47437712:+|nuORF	ENST00000362021.8_1_11:47437613-47437712:+|nuORF	ENST00000362021.8_1_11:47437613-47437712:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.4301155641001	1	752.430116	751.422839	1.4769	0.0011113	6.0067	0.0045197	7.4836	0.0056309	752.43333069079	32.682	0.26542	32.679	32.631	32.896	-0.0031052	552	133	1.2908988	0.07907343	1.2893794	263.26926	0	16.12645						669	12	3	NaN	NaN	NaN	0.69631	1	4011	4011		19.285	4.2718	1	167750			14278	6613	8293	8458	11249	11249					0.037184591515256216
LLPAWVTL	8	Unmodified	_LLPAWVTL_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.78129627215	2	456.781296	911.54804	1.3392	0.00061173	-6.9544	-0.0031766	-5.6152	-0.0025649	456.77823581190813	18.916	0.048048	18.916	18.916	18.964	0	1368	67	0.7950918	0.04066205	0.7950918	323.27805	0	16.532867						122	3	3	NaN	NaN	NaN	0.62311	1	6266	6266		23.85	1.7241	1	11032	+		14279	8367	8294	8459	11250	11250					0.08872751287890424
LLPAWVTL	8	Unmodified						0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	456.781296	911.54804	1.3392	0.00061173	-6.9544	-0.0031766	-5.6152	-0.0025649	456.77823581190813	18.916	0.048048	18.916	18.916	18.964	0	1368	67	0.7950918	0.04066205	0.7950918	323.27805		16.532867	-0.0037349	-0.00092684	0.0053852	NaN	23.85	122	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11032	+		14280	8367	8294	8459							0.08872751287890424
LLPDDARL	8	Unmodified	_LLPDDARL_					0	0	0			REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.7610921463	2	456.761092	911.507631	0.89119	0.00040706	-0.7002	-0.00031983	0.19098	8.7234E-05	456.76062067993	20.959	0.33707	20.945	20.825	21.162	-0.014088	1344	58	0.8098828	0.03511536	0.8083634	329.29214	0	14.277618						425	15	3	NaN	NaN	NaN	0.73961	1	6138	6138		16.584	0.16752	1	98177	+		14281	9073	8295	8460	11251	11251					0.04833784897471105
LLPDELRSLDW	11	Unmodified	_LLPDELRSLDW_					0	0	0			REV__ENST00000473486.1_1_9:131397903-131399306:-|nuORF	REV__ENST00000473486.1_1_9:131397903-131399306:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.9101151371333	3	452.910115	1355.70852	0.89318	0.00040453	-2.6658	-0.0012074	-1.7726	-0.00080284	452.9090456409078	24.719	0.096523	24.719	24.719	24.816	0	1491	55	0.7190863	0.03343892	0.7190863	436.4195	0	20.294373						76	5	2	NaN	NaN	NaN	0.73894	1	19619	19619		4.9007	0	1	9700.5	+		14282	9286	8296	8461	11252	11252					0.044890094234460776
LLPDGGPS	8	Unmodified	_LLPDGGPS_					0	0	0		ENST00000325239.11_1_10:50184948-50186364:+|nuORF	ENST00000325239.11_1_10:50184948-50186364:+|nuORF	ENST00000325239.11_1_10:50184948-50186364:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068001	1	755.393396	754.386119	1.3613	0.0010283	4.8374	0.0036541	6.1986	0.0046824	755.3971755508685	28.821	0.21722	28.813	28.765	28.982	-0.0083504	531	88	1.3034686	0.05207491	1.3019491	265.81406	0	10.619507						326	10	3	NaN	NaN	NaN	0.84207	1	4066	4066		3.5732	0	1	49635			14283	6492	8297	8462	11253	11253					-0.0008983746504327428
LLPDSPDSW	9	Unmodified	_LLPDSPDSW_					0	0	0			REV__nc|ENSG00000167633|P43629-2|KIR3DL1	REV__nc|ENSG00000167633|P43629-2|KIR3DL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2480145608	2	515.248015	1028.48148	1.2187	0.00062795	1.6523	0.00085134	2.871	0.0014793	515.2490167055392	33.19	0.1689	33.19	33.118	33.287	0	1287	43	0.8449601	0.02582264	0.8449601	342.97366	0	10.481567						108	8	3	NaN	NaN	NaN	0.56671	1	9708	9708		6.8632	1.1691	1	8450.2	+		14284	10467	8298	8463	11254	11254					-0.03162529064661612
LLPDSPDSW	9	Unmodified						0	0	0			REV__nc|ENSG00000167633|P43629-2|KIR3DL1	REV__nc|ENSG00000167633|P43629-2|KIR3DL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.248015	1028.48148	1.2187	0.00062795	1.6523	0.00085134	2.871	0.0014793	515.2490167055392	33.19	0.1689	33.19	33.118	33.287	0	1287	43	0.8449601	0.02582264	0.8449601	342.97366		10.481567	0.0019056	-1.5134E-05	0.0016819	NaN	6.8632	108	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8450.2	+		14285	10467	8298	8463							-0.03162529064661612
LLPDSPDSW	9	Unmodified						0	0	0			REV__nc|ENSG00000167633|P43629-2|KIR3DL1	REV__nc|ENSG00000167633|P43629-2|KIR3DL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.248015	1028.48148	0.90942	0.00046858	1.694	0.00087285	2.6035	0.0013414	515.2481742410549	33.189	0.072411	33.186	33.162	33.235	-0.0024796	1290	40	0.84311575	0.023979485	0.8415963	342.22504		9.733398	-0.0019056	2.788E-05	-0.0016819	NaN	6.8632	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7494.8	+		14286	10467	8298	8463							-0.03162529064661612
LLPETYLRVFY	11	Unmodified	_LLPETYLRVFY_					0	0	0			REV__nc|ENSG00000124155|Q969N2-3|PIGT	REV__nc|ENSG00000124155|Q969N2-3|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.39247046005	2	707.39247	1412.77039	0.96331	0.00068144	-7.4358	-0.00526	-6.4725	-0.0045786	707.3867390571747	36.278	0.096416	36.278	36.229	36.326	0	1023	49	1.0064877	0.029226363	1.0064877	407.06754	0	11.820404						103	5	3	NaN	NaN	NaN	0.65577	1	20167	20167		10.36	2.1153	1	7625.2	+		14287	9372	8299	8464	11255	11255					0.08051360842614486
LLPGKTYSF	9	Unmodified	_LLPGKTYSF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.28694275605	2	513.286943	1024.55933	1.9064	0.00097854	-3.3353	-0.001712	-1.4289	-0.00073344	513.2851085016126	21.079	0.3131	21.079	21.031	21.344	0	1278	52	0.85049206	0.031347692	0.85049206	345.23657	0	12.724823						385	14	4	NaN	NaN	NaN	0.21199	1	9562	9562		24.562	0.71157	1	103280			14288	1381	8300	8465	11256	11256					0.04803528591378381
LLPGKTYSF	9	Unmodified	_LLPGKTYSF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.28694275605	2	513.286943	1024.55933	1.1144	0.00057202	-2.0242	-0.001039	-0.90981	-0.00046699	513.2862228521867	21.103	0.26486	21.089	21.017	21.282	-0.014004	1278	52	0.85049206	0.031344235	0.8489726	345.23657	0	12.723419						362	12	4	NaN	NaN	NaN	0.42817	1	9377	9377		12.57	1.3994	1	102570			14289	1381	8300	8465	11257	11257					0.04803528591378381
LLPGYCIYSHG	11	Unmodified	_LLPGYCIYSHG_					0	0	0			REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3	REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.20235305106655	3	408.202353	1221.58523	1.6437	0.00067096	-2.2862	-0.00093323	-0.6425	-0.00026227	408.2017679723203	29.232	0.072384	29.232	29.208	29.28	0	1452	22	0.74322224	0.0129877925	0.74322224	451.56647	0	7.8911133						29	4	2	NaN	NaN	NaN	0.76488	1	17015	17015		0.9877	0	1	1484.6	+		14290	9088	8301	8466	11258	11258					-0.016699452286729866
LLPHSGGG	8	Unmodified	_LLPHSGGG_					0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3940644088002	1	737.394064	736.386788	1.1689	0.00086195	-0.23301	-0.00017182	0.9359	0.00069013	737.3933977686271	24.261	0.14483	24.261	24.188	24.333	0	582	49	1.2729256	0.028772473	1.2729256	259.6988	0	5.870056						105	7	2	NaN	NaN	NaN	0.81807	1	3856	3856		6.794	0	1	10105	+		14291	11196	8302	8467	11259	11259					0.008050019746747239
LLPHSGGG	8	Unmodified	_LLPHSGGG_					0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3940644088002	1	737.394064	736.386788	1.0911	0.00080456	0.11994	8.844E-05	1.211	0.000893	737.3940763386122	24.381	0.048246	24.381	24.357	24.406	0	555	52	1.2891023	0.03054297	1.2891023	262.9991	0	6.2312927						57	3	2	NaN	NaN	NaN	0.79379	1	3857	3857		10.052	0	1	7417.1	+		14292	11196	8302	8467	11260	11260					0.008050019746747239
LLPHSGGG	8	Unmodified	_LLPHSGGG_					0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088002	1	737.394064	736.386788	1.5783	0.0011638	-1.1153	-0.00082241	0.46299	0.00034141	737.3949602187668	24.405	0.048277	24.393	24.368	24.417	-0.012747	552	49	1.2908988	0.028741598	1.2893794	263.36563	0	5.8637695						103	3	3	NaN	NaN	NaN	0.75682	1	3783	3783		15.013	0	1	9508.9	+		14293	11196	8302	8467	11261	11261					0.008050019746747239
LLPHSGGG	8	Unmodified						0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.394064	736.386788	1.1689	0.00086195	-0.23301	-0.00017182	0.9359	0.00069013	737.3933977686271	24.261	0.14483	24.261	24.188	24.333	0	582	49	1.2729256	0.028772473	1.2729256	259.6988		5.870056	0.018586	0.00046297	0.00075972	NaN	6.794	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10105	+		14294	11196	8302	8467							0.008050019746747239
LLPHSGGG	8	Unmodified						0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.394064	736.386788	1.0911	0.00080456	0.11994	8.844E-05	1.211	0.000893	737.3940763386122	24.381	0.048246	24.381	24.357	24.406	0	555	52	1.2891023	0.03054297	1.2891023	262.9991		6.2312927	-0.0055665	0.00015085	-0.00013851	NaN	15.013	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7417.1	+		14295	11196	8302	8467							0.008050019746747239
LLPHSGGG	8	Unmodified						0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.394064	736.386788	1.5783	0.0011638	-1.1153	-0.00082241	0.46299	0.00034141	737.3949602187668	24.405	0.048277	24.393	24.368	24.417	-0.012747	552	49	1.2908988	0.028741598	1.2893794	263.36563		5.8637695	0.0055665	-0.00075999	0.00013851	NaN	15.013	103	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9508.9	+		14296	11196	8302	8467							0.008050019746747239
LLPNHSYVF	9	Unmodified	_LLPNHSYVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2900167612501	2	545.290017	1088.56548	1.6412	0.00089494	-0.48871	-0.00026649	1.1525	0.00062844	545.2896120203701	22.67	0.19299	22.67	22.597	22.79	0	1197	124	0.9001988	0.07546437	0.9001988	365.12888	0	30.60904						234	9	3	NaN	NaN	NaN	0.29681	1	12329	12329		19.118	2.5342	1	27023			14297	2764	8303	8468	11262	11262					0.024740468228856116
LLPNHSYVF	9	Unmodified						0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.290017	1088.56548	1.4598	0.00079604	-4.8351	-0.0026365	-3.3753	-0.0018405	545.2881486886532	22.645	0.072355	22.631	22.607	22.68	-0.01354	1272	76	0.854179	0.046049654	0.8526596	346.46283		18.678162	-0.019129	-0.0033585	-0.02377	NaN	19.118	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9215.8			14298	2764	8303	8468							0.024740468228856116
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENST00000569365.6_1_16:18794333-18800349:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.7980089688501	2	532.798009	1063.58147	2.1061	0.0011221	-2.9894	-0.0015928	-0.88339	-0.00047067	532.7965147258004	23.682	0.19283	23.682	23.61	23.803	0	1314	100	0.8283535	0.060857892	0.8283535	336.0864	0	24.691772						349	9	4	NaN	NaN	NaN	0.070055	1	11293	11293		40.154	11.487	1	77245			14299	2873	8304	8469	11263	11263					0.05221753059799994
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENST00000569365.6_1_16:18794333-18800349:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.7980089688501	2	532.798009	1063.58147	2.052	0.0010933	0.52275	0.00027852	2.5747	0.0013718	532.7985934609005	23.682	0.14463	23.682	23.634	23.778	0	1224	85	0.883646	0.051561713	0.883646	358.5201	0	20.920013						300	7	4	NaN	NaN	NaN	0.14787	1	11294	11294		28.896	6.7692	1	52678			14300	2873	8304	8469	11264	11264					0.05221753059799994
LLQAPEIVI	9	Unmodified	_LLQAPEIVI_					0	0	0			REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.6135592381	1	995.613559	994.606283	1.394	0.0013879	-1.1731	-0.0011679	0.2209	0.00021993	995.6130238858118	33.816	0.04829	33.814	33.79	33.839	-0.0018463	198	49	1.5015416	0.028376937	1.5000222	304.88303	0	5.7618713						64	3	2	NaN	NaN	NaN	0.48181	1	8214	8214		10.36	1.3982	1	5055.7	+		14301	9652	8305	8470	11265	11265					0.1087638814251477
LLQAPEIVI	9	Unmodified						0	0	0			REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	REV__nc|ENSG00000136205|Q68CZ2-4|TNS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	995.613559	994.606283	1.394	0.0013879	-1.1731	-0.0011679	0.2209	0.00021993	995.6130238858118	33.816	0.04829	33.814	33.79	33.839	-0.0018463	198	49	1.5015416	0.028376937	1.5000222	304.88303		5.7618713	-0.0015304	-0.000367	-0.00075972	NaN	10.36	64	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5055.7	+		14302	9652	8305	8470							0.1087638814251477
LLQCPADLL	9	Unmodified	_LLQCPADLL_					0	0	0		ENST00000477386.1_1_X:14044301-14045241:-|nuORF	ENST00000477386.1_1_X:14044301-14045241:-|nuORF	ENST00000477386.1_1_X:14044301-14045241:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5386797355001	1	985.53868	984.531403	1.6823	0.001658	0.10294	0.00010145	1.7853	0.0017595	985.539755335649	34.252	0.072433	34.252	34.252	34.324	0	222	52	1.4873441	0.030180931	1.4873441	302.04248	0	6.128998						95	4	2	NaN	NaN	NaN	0.25448	1	8040	8040		21.835	1.3863	1	7080.5			14303	7183	8306	8471	11266	11266					0.03851882339631629
LLQFRTYYLCR	11	Unmodified	_LLQFRTYYLCR_					0	0	0			REV__ENSG00000161921|ENST00000293778|CXCL16	REV__ENSG00000161921|ENST00000293778|CXCL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3950215365	2	738.395022	1474.77549	1.7032	0.0012576	4.551	0.0033604	6.2541	0.004618	738.9006789273038	19.539	0.14447	19.524	19.524	19.669	-0.014143	1194	40	0.902037	0.023894131	0.9005176	364.67435	0	9.659882						166	7	4	NaN	NaN	NaN	0.77843	1	19503	19503		0.51604	0.13095	1	11694	+		14304	10220	8307	8472	11267	11267					0.05709341433566806
LLQTGEQWKRE	11	Unmodified	_LLQTGEQWKRE_					0	0	0			REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.37005799625	2	694.370058	1386.72556	1.5279	0.0010609	-1.4345	-0.00099609	0.093381	6.4841E-05	694.368310890017	21.561	0.072298	21.561	21.513	21.585	0	1050	31	0.9900381	0.018288136	0.9900381	400.4875	0	7.3978577						49	4	2	NaN	NaN	NaN	0.6875	1	19950	19950		8.2775	0	1	4770.7	+		14305	12288	8308	8473	11268	11268					0.04766930029268224
LLQTGEQWKRE	11	Unmodified						0	0	0			REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	694.370058	1386.72556	1.5279	0.0010609	-1.4345	-0.00099609	0.093381	6.4841E-05	694.368310890017	21.561	0.072298	21.561	21.513	21.585	0	1050	31	0.9900381	0.018288136	0.9900381	400.4875		7.3978577	-0.0051067	-0.00048591	0.00075972	NaN	8.2775	49	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4770.7	+		14306	12288	8308	8473							0.04766930029268224
LLQTGEQWKRE	11	Unmodified						0	0	0			REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	REV__nc|ENSG00000169087|Q96EW2-3|HSPBAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	694.370058	1386.72556	1.5612	0.001084	-0.73043	-0.00050719	0.83074	0.00057684	694.3677818458649	21.585	0.048288	21.571	21.547	21.595	-0.013895	1050	46	0.9900381	0.027436674	0.9885187	400.4875		11.098602	0.0051067	0.00049189	-0.00075972	NaN	8.2775	79	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5926	+		14307	12288	8308	8473							0.04766930029268224
LLRFTYGPSFP	11	Unmodified	_LLRFTYGPSFP_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.35060564535	2	649.350606	1296.68666	1.0097	0.00065566	0.42933	0.00027878	1.439	0.00093444	649.3520116226367	35.048	0.19294	35.048	34.951	35.144	0	1227	79	0.88180584	0.047816634	0.88180584	356.95007	0	19.355927						545	8	5	NaN	NaN	NaN	0.74794	1	18719	18719		4.3102	0.74037	1	76172			14308	4731;8112	8309	8474	11269	11269					0.05018249465547342
LLRINSVIF	9	Unmodified	_LLRINSVIF_					0	0	0			REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A	REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.83713412935	2	537.837134	1073.65972	1.5756	0.00084744	-1.4439	-0.00077656	0.13178	7.0877E-05	537.8362702599404	20.429	0.048056	20.429	20.429	20.477	0	1170	34	0.91673553	0.02020061	0.91673553	371.90085	0	8.195007						65	3	3	NaN	NaN	NaN	0.39244	1	11732	11732		14.042	0.57854	1	6062.4	+		14309	9243	8310	8475	11270	11270					0.12583185645030426
LLSAALVA	8	Unmodified	_LLSAALVA_					0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.4818167836	1	757.481817	756.47454	1.4899	0.0011286	-0.19899	-0.00015073	1.291	0.00097787	757.4830669870624	30.56	0.048254	30.56	30.535	30.584	0	489	37	1.3285799	0.021508098	1.3285799	270.92166	0	4.3858643						48	3	2	NaN	NaN	NaN	0.50567	1	4178	4178		30.791	6.9407	1	3068.3	+		14310	9494	8311	8476	11271	11271					0.08656202845418193
LLSAGILTF	9	Unmodified	_LLSAGILTF_					0	0	0			REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5607953860999	1	934.560795	933.553519	2.1289	0.0019895	-5.2392	-0.0048964	-3.1104	-0.0029068	934.5569357618199	32.465	0.024109	32.462	32.462	32.486	-0.0031052	297	37	1.4428991	0.021361947	1.4413797	293.23764	0	4.341339						40	2	2	NaN	NaN	NaN	0.062072	1	6554	6554		41.785	10.223	1	2439.6	+		14311	11891	8312	8477	11272	11272					0.08408430079691698
LLSAGILTF	9	Unmodified						0	0	0			REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.560795	933.553519	1.3682	0.0012787	-0.48467	-0.00045295	0.88352	0.00082571	934.5601024886021	32.297	0.096561	32.297	32.273	32.37	0	288	46	1.4482387	0.026698232	1.4482387	294.32278		5.425812	-0.082374	0.0018441	0.0034295	NaN	41.785	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5333.5	+		14312	11891	8312	8477							0.08408430079691698
LLSAGILTF	9	Unmodified						0	0	0			REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	REV__ENST00000370803.7_1_X:133507372-133511608:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	934.560795	933.553519	2.1289	0.0019895	-5.2392	-0.0048964	-3.1104	-0.0029068	934.5569357618199	32.465	0.024109	32.462	32.462	32.486	-0.0031052	297	37	1.4428991	0.021361947	1.4413797	293.23764		4.341339	0.082374	-0.0025993	-0.0034295	NaN	41.785	40	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2439.6	+		14313	11891	8312	8477							0.08408430079691698
LLSEAELLL	9	Unmodified	_LLSEAELLL_					0	0	0		ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5924894450001	1	1000.59249	999.585213	1.3379	0.0013387	-1.3098	-0.0013105	0.028151	2.8168E-05	1000.590396896252	35.022	0.096539	35.022	34.998	35.094	-4.5776E-05	174	58	1.5157272	0.033678055	1.5142077	307.74237	0	6.837738						116	5	2	NaN	NaN	NaN	0.36492	1	8409	8409		15.175	0	1	15670			14314	7299	8313	8478	11273	11273					0.08540378042994234
LLSEAELLL	9	Unmodified						0	0	0		ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.59249	999.585213	1.1065	0.0011071	0.061767	6.1803E-05	1.1682	0.0011689	1000.5916884612628	35.023	0.072395	35.023	34.999	35.072	0	177	55	1.5139546	0.0319072	1.5139546	307.38248		6.47818	0.00073672	0.00073271	-0.00012654	NaN	15.175	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15642			14315	7299	8313	8478							0.08540378042994234
LLSEPAGP	8	Unmodified	_LLSEPAGP_					0	0	0		ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4246958352	1	783.424696	782.417419	1.1237	0.0008803	5.6224	0.0044048	6.7461	0.0052851	783.4288995334202	35.77	0.16866	35.77	35.722	35.891	0.00053024	474	67	1.3375392	0.039418697	1.3360198	272.5875	0	8.033447						262	8	3	NaN	NaN	NaN	0.79379	1	4444	4444		10.052	0	1	38822			14316	6330	8314	8479	11274	11274					0.017507355690440818
LLSEPAGP	8	Unmodified						0	0	0		ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.424696	782.417419	1.3893	0.0010884	4.8521	0.0038013	6.2414	0.0048897	783.4281270368772	35.771	0.19293	35.771	35.723	35.916	0	474	61	1.3375392	0.035835147	1.3375392	272.5875		7.3031616	0.00050888	-0.00025464	0.00075972	NaN	10.052	266	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39532			14317	6330	8314	8479							0.017507355690440818
LLSGDLIFL	9	Unmodified	_LLSGDLIFL_					0	0	0		ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5870101366	1	990.58701	989.579734	1.7375	0.0017212	-3.1367	-0.0031071	-1.3991	-0.001386	990.5836322192039	37.241	0.21661	37.241	37.193	37.41	0	180	88	1.5121819	0.0514251	1.5121819	307.0648	0	10.442413						439	10	4	NaN	NaN	NaN	0.049695	1	8212	8212		47.04	0	1	101840			14318	5590	8315	8480	11275	11275					0.0845269925117691
LLSGGASR	8	Unmodified	_LLSGGASR_					0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4311781966001	1	760.431178	759.423902	1.6843	0.0012808	-6.1799	-0.0046994	-4.4956	-0.0034186	760.4270064400171	29.715	0.16893	29.715	29.667	29.836	0	513	91	1.3142352	0.05384457	1.3142352	267.978	0	10.9791565						303	8	3	NaN	NaN	NaN	0.57691	1	4212	4212		26.732	4.6052	1	41134	+		14319	13154	8316	8481	11276	11276					0.03456673520418008
LLSGGASR	8	Unmodified						0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	760.431178	759.423902	1.6843	0.0012808	-6.1799	-0.0046994	-4.4956	-0.0034186	760.4270064400171	29.715	0.16893	29.715	29.667	29.836	0	513	91	1.3142352	0.05384457	1.3142352	267.978		10.9791565	0.0039755	0.00015201	0.00075972	NaN	26.732	303	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41134	+		14320	13154	8316	8481							0.03456673520418008
LLSGPPGV	8	Unmodified	_LLSGPPGV_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.4348665910001	1	739.434867	738.42759	0.93861	0.00069404	5.8589	0.0043323	6.7975	0.0050263	739.4384409390234	35.723	0.096531	35.723	35.675	35.771	0	543	49	1.296287	0.028732419	1.296287	264.45154	0	5.861603						137	5	3	NaN	NaN	NaN	0.84207	1	3894	3894		3.5732	0	1	12801			14321	508	8317	8482	11277	11277					0.047913432942777945
LLSGPPGV	8	Unmodified	_LLSGPPGV_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.4348665910001	1	739.434867	738.42759	1.0446	0.00077239	5.031	0.0037201	6.0756	0.0044925	739.4385325565909	35.698	0.096428	35.698	35.674	35.77	0.00053024	543	52	1.296287	0.030529857	1.2947675	264.45154	0	6.228302						122	5	2	NaN	NaN	NaN	0.81807	1	3820	3820		6.794	0	1	12286			14322	508	8317	8482	11278	11278					0.047913432942777945
LLSHCLVAL	9	Unmodified	_LLSHCLVAL_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.7835129976	2	484.783513	967.552473	2.5055	0.0012146	-11.157	-0.0054089	-8.6519	-0.0041943	484.77816922337263	17.762	0.11985	17.748	17.724	17.844	-0.013786	1323	31	0.8228144	0.018466711	0.82129496	334.26227	0	7.5019836						73	6	2	NaN	NaN	NaN	0.27442	1	7401	7401		20.555	1.4371	1	5001.6			14323	5233	8318	8483	11279	11279					0.06739892439145478
LLSNSGAG	8	Unmodified	_LLSNSGAG_					0	0	0		nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.3729946157001	1	718.372995	717.365718	1.7041	0.0012242	6.4629	0.0046428	8.1671	0.005867	718.3775738980894	23.272	0.072306	23.272	23.248	23.32	0	669	40	1.2206948	0.023448944	1.2206948	249.16342	0	4.7862854						69	4	2	NaN	NaN	NaN	0.81251	1	3553	3553		7.5404	0	1	5098.4			14324	1201	8319	8484	11280	11280					-0.004270081248478164
LLSSGRGS	8	Unmodified	_LLSSGRGS_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.4260928187001	1	776.426093	775.418816	1.4771	0.0011469	-4.4717	-0.0034719	-2.9945	-0.002325	776.423233842428	24.791	0.048218	24.779	24.731	24.779	-0.012394	492	67	1.3267875	0.039448142	1.325268	270.43845	0	8.04068						113	3	3	NaN	NaN	NaN	0.77489	1	4360	4360		12.588	0	1	16693	+		14325	10406	8320	8485	11281	11281					0.022123696578091767
LLSSLSGS	8	Unmodified	_LLSSLSGS_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;ENST00000492095.5_1_1:16785414-16785925:+|nuORF;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;nc|ENSG00000121904|Q7Z408-2|CSMD2;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000183117|Q96PZ7-4|CSMD1	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.4196104573002	1	763.41961	762.412334	1.2692	0.00096891	3.6661	0.0027988	4.9353	0.0037677	763.4214389502282	30.607	0.12065	30.601	30.553	30.673	-0.0057545	552	55	1.2908988	0.032334447	1.2893794	263.20126	0	6.5926514						124	6	2	NaN	NaN	NaN	0.82332	1	4172	4172		6.0903	0	1	15369			14326	232;7972;5295	8321	8486	11282	11282					0.02162431706449297
LLSVSIYS	8	Unmodified	_LLSVSIYS_					0	0	0		ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.25256862245	2	441.252569	880.490584	1.5947	0.00070365	-4.5179	-0.0019935	-2.9232	-0.0012899	441.250469354891	32.899	0.072376	32.897	32.873	32.945	-0.0024757	1461	31	0.7376554	0.018561065	0.73613596	300.08185	0	7.55072						52	4	2	NaN	NaN	NaN	0.79379	1	5689	5689		10.052	0	1	2960.8			14327	7684	8322	8487	11283	11283					0.045558642916603276
LLTAGRLF	8	Unmodified	_LLTAGRLF_					0	0	0		ENST00000412797.1_1_1:25907999-25908206:+|nuORF	ENST00000412797.1_1_1:25907999-25908206:+|nuORF	ENST00000412797.1_1_1:25907999-25908206:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.77654524524996	2	445.776545	889.538538	1.3235	0.00059001	-3.5197	-0.001569	-2.1962	-0.00097901	445.7750329303811	22.79	0.072298	22.79	22.766	22.838	0	1326	37	0.8209676	0.022162437	0.8209676	333.9215	0	9.014404						79	4	2	NaN	NaN	NaN	0.49126	1	5933	5933		31.561	0	1	13226			14328	6869	8323	8488	11284	11284					0.08934983002359331
LLTAGRLF	8	Unmodified	_LLTAGRLF_					0	0	0		ENST00000412797.1_1_1:25907999-25908206:+|nuORF	ENST00000412797.1_1_1:25907999-25908206:+|nuORF	ENST00000412797.1_1_1:25907999-25908206:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.77654524524996	2	445.776545	889.538538	1.2526	0.00055839	-2.709	-0.0012076	-1.4564	-0.00064921	445.7753179089859	22.886	0.096445	22.872	22.824	22.921	-0.01354	1329	37	0.81912065	0.02216494	0.8176012	333.17026	0	9.015381						108	5	3	NaN	NaN	NaN	0.74229	1	5813	5813		16.417	0	1	10766			14329	6869	8323	8488	11285	11285					0.08934983002359331
LLTDSYKPHK	10	Unmodified	_LLTDSYKPHK_					0	0	0			REV__ENST00000592995.1_1_17:58539164-58539350:-|nuORF	REV__ENST00000592995.1_1_17:58539164-58539350:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.2240340836666	3	401.224034	1200.65027	1.2741	0.00051119	0.29014	0.00011641	1.5642	0.0006276	401.2238023529859	15.462	0.14416	15.462	15.39	15.534	0	1446	28	0.7469324	0.016693175	0.7469324	453.90897	0	10.144409						79	7	2	NaN	NaN	NaN	0.77024	1	16506	16506		2.4611	1.2843	1	5447.3	+		14330	8523	8324	8489	11286	11286					0.05797372568827086
LLTEEAALN	9	Unmodified	_LLTEEAALN_					0	0	0		ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.26366462499993	2	487.263665	972.512776	2.2746	0.0011083	-9.4861	-0.0046223	-7.2115	-0.0035139	487.25844352999036	18.17	0.096033	18.156	18.084	18.18	-0.01395	1329	52	0.81912065	0.03140533	0.8176012	332.73795	0	12.757294						81	5	2	NaN	NaN	NaN	0.63698	1	7528	7528		3.9685	0.39873	1	6844.4			14331	1603	8325	8490	11287	11287					0.025420439694130437
LLTEESRWR	9	Unmodified	_LLTEESRWR_					0	0	0			REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF	REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3198368332	2	595.319837	1188.62512	0.91266	0.00054332	3.237	0.001927	4.1496	0.0024704	595.3213643546856	30.68	0.19307	30.68	30.632	30.825	0	1164	76	0.9204082	0.0458858	0.9204082	372.9329	0	18.592133						418	9	4	NaN	NaN	NaN	0.41766	1	16125	16125		13.003	0.41496	1	56574	+		14332	11503	8326	8491	11288	11288					0.03835317766265689
LLTHAGAS	8	Unmodified	_LLTHAGAS_					0	0	0			REV__nc|ENSG00000142405|P59046-4|NLRP12	REV__nc|ENSG00000142405|P59046-4|NLRP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.4202791593001	1	769.420279	768.413003	1.4996	0.0011538	-8.7105	-0.006702	-7.2109	-0.0055482	769.4134941262886	29.063	0.12066	29.063	29.015	29.136	0	543	58	1.296287	0.03412521	1.296287	264.26343	0	6.956848						134	6	2	NaN	NaN	NaN	0.84692	1	4341	4341		1.4396	0	1	16140	+		14333	9843	8327	8492	11289	11289					0.019532711461465624
LLTSSGGA	8	Unmodified	_LLTSSGGA_					0	0	0			REV__ENST00000235180.4_1_1:35334661-35351837:-|nuORF	REV__ENST00000235180.4_1_1:35334661-35351837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3777456426002	1	705.377746	704.370469	0.80694	0.00056919	5.9773	0.0042163	6.7842	0.0047854	705.3810110675176	28.604	0.12063	28.596	28.547	28.668	-0.0083504	633	55	1.2423272	0.03242767	1.2408078	253.6666	0	6.6213074						165	6	3	NaN	NaN	NaN	0.84692	1	3233	3233		1.4396	0	1	17826	+		14334	11489	8328	8493	11290	11290					0.006458760179157252
LLTTSIAA	8	Unmodified	_LLTTSIAA_					0	0	0			REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4716460277999	1	789.471646	788.46437	2.2077	0.0017429	-4.798	-0.0037879	-2.5903	-0.002045	789.4671818699779	53.948	0.072014	53.948	53.948	54.02	0	414	31	1.3733286	0.017875552	1.3733286	279.84433	0	3.6425476						43	4	2	NaN	NaN	NaN	0.84727	1	4610	4610		1.2418	0	1	2247.8	+		14335	13500	8329	8494	11291	11291					0.061675951201777934
LLTTSIAA	8	Unmodified						0	0	0			REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.471646	788.46437	2.2077	0.0017429	-4.798	-0.0037879	-2.5903	-0.002045	789.4671818699779	53.948	0.072014	53.948	53.948	54.02	0	414	31	1.3733286	0.017875552	1.3733286	279.84433		3.6425476	0.16232	0.00074573	-0.0081733	NaN	1.2418	43	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2247.8	+		14336	13500	8329	8494							0.061675951201777934
LLTTSIAA	8	Unmodified						0	0	0			REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	REV__tr|U7STP6|U7STP6_FUSNUadenosylhomocysteinenucleosidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01422PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.471646	788.46437	0.12265	9.6829E-05	-6.2584	-0.0049408	-6.1358	-0.004844	789.4654828111702	53.624	0.088833	53.623	53.623	53.712	-0.00059128	384	37	1.3911947	0.021427989	1.3896753	283.48492		4.366394	-0.16232	-0.00040721	0.0081733	NaN	1.2418	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5705.3	+		14337	13500	8329	8494							0.061675951201777934
LLVGAAVF	8	Unmodified	_LLVGAAVF_					0	0	0		ENSG00000169427|ENST00000520439|KCNK9;KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant;ENSG00000124249|ENST00000372861|KCNK15;ENSG00000171303|ENST00000302909|KCNK3	ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4869021615001	1	789.486902	788.479626	1.2494	0.00098639	0.14401	0.0001137	1.3934	0.0011001	789.4868678082134	30.39	0.16892	30.383	30.335	30.504	-0.0064106	495	85	1.3249949	0.050185323	1.3234755	269.9952	0	10.226318						323	8	3	NaN	NaN	NaN	0.30174	1	4525	4525		41.978	0	1	51147			14338	4674	8330	8495	11292	11292					0.07692506708042401
LLVGAVFS	8	Unmodified	_LLVGAVFS_					0	0	0			REV__TBC1D4|p.G1010V|1|0.41|ENSG00000136111|chr13:75299457-75299457|C/A|missense_variant	REV__TBC1D4|p.G1010V|1|0.41|ENSG00000136111|chr13:75299457-75299457|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4818167836002	1	805.481817	804.47454	-0.11808	-9.5108E-05	-8.1849	-0.0065928	-8.303	-0.0066879	805.4764694313026	56.851	0.12017	56.85	56.754	56.874	-0.00056458	375	88	1.3965509	0.051748395	1.3950315	284.47943	0	10.541229						175	6	2	NaN	NaN	NaN	0.82797	1	4711	4711		5.4659	1.4122	1	10934	+		14339	9649	8331	8496	11293	11293					0.0644820284543357
LLVLGALL	8	Unmodified	_LLVLGALL_					0	0	0			REV__nc|ENSG00000149564|Q96AP7-2|ESAM	REV__nc|ENSG00000149564|Q96AP7-2|ESAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.5651524825001	1	811.565152	810.557876	1.8225	0.0014791	-0.76787	-0.00062318	1.0547	0.00085593	811.5642536341578	35.771	0.217	35.771	35.723	35.94	0	426	121	1.3661768	0.07157886	1.3661768	278.2571	0	14.578888						505	10	4	NaN	NaN	NaN	0.60626	1	4905	4905		24.901	0	1	170610	+		14340	9996	8332	8497	11294	11294					0.1450193929327952
LLVPGPGG	8	Unmodified	_LLVPGPGG_					0	0	0		ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENSG00000134970|ENST00000456936|TMED7	ENSG00000134970|ENST00000456936|TMED7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.4243019047002	1	709.424302	708.417025	1.4067	0.00099797	6.217	0.0044105	7.6238	0.0054085	709.4289996089528	36.324	0.096287	36.325	36.277	36.373	0.0011024	576	49	1.2765218	0.028769255	1.2750024	260.62027	0	5.8736877						100	5	2	NaN	NaN	NaN	0.84651	1	3338	3338		1.6704	0	1	9340.1			14341	2909	8333	8498	11295	11295					0.05115360639865685
LLVPGPGG	8	Unmodified						0	0	0		ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7	ENSG00000134970|ENST00000456936|TMED7	ENSG00000134970|ENST00000456936|TMED7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.424302	708.417025	0.9844	0.00069836	5.3421	0.0037898	6.3265	0.0044882	709.4285053585869	36.326	0.16874	36.326	36.254	36.422	0	579	55	1.2747238	0.0323689	1.2747238	260.2532		6.6085815	0.00029732	-0.00043186	-0.00013927	NaN	1.6704	108	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8907.8			14342	2909	8333	8498							0.05115360639865685
LLVRGTSA	8	Unmodified	_LLVRGTSA_					0	0	0			REV__nc|ENSG00000183963|P53814-2|SMTN	REV__nc|ENSG00000183963|P53814-2|SMTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.4937784534002	1	816.493778	815.486502	2.3078	0.0018843	0.016387	1.338E-05	2.3242	0.0018977	816.4943262819049	54.5	0.024025	54.5	54.476	54.5	0	399	328	1.382264	0.19554317	1.382264	281.50534	0	39.82338						228	2	2	NaN	NaN	NaN	0.84756	1	4964	4964		1.072	0.74213	1	106040	+		14343	10909	8334	8499	11296	11296					0.07137819588626826
LLVTGSAG	8	Unmodified	_LLVTGSAG_					0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.4141311489001	1	717.414131	716.406855	0.67865	0.00048688	8.813	0.0063226	9.4916	0.0068094	717.4207226382051	31.934	0.048256	31.93	31.93	31.979	-0.0037613	537	79	1.2998781	0.046710253	1.2983587	265.33264	0	9.534546						103	3	3	NaN	NaN	NaN	0.84207	1	3470	3470		3.5732	0	1	8380.9	+		14344	9276	8335	8500	11297	11297					0.03730752914623281
LLVTGSAG	8	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	717.414131	716.406855	0.79363	0.00056936	11.22	0.0080493	12.013	0.0086186	717.4223602016476	31.959	0.096558	31.959	31.911	32.008	0	540	82	1.2980826	0.04850936	1.2980826	264.96613		9.901794	0.014481	0.00081324	-0.00013803	NaN	3.5732	123	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10959	+		14345	9276	8335	8500							0.03730752914623281
LLVTGSAG	8	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.414131	716.406855	0.67865	0.00048688	8.813	0.0063226	9.4916	0.0068094	717.4207226382051	31.934	0.048256	31.93	31.93	31.979	-0.0037613	537	79	1.2998781	0.046710253	1.2983587	265.33264		9.534546	-0.014481	-0.00091348	0.00013803	NaN	3.5732	103	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8380.9	+		14346	9276	8335	8500							0.03730752914623281
LLYDPQLTF	9	Unmodified	_LLYDPQLTF_					0	0	0		ENST00000399503.3_1_5:56190013-56190223:+|nuORF	ENST00000399503.3_1_5:56190013-56190223:+|nuORF	ENST00000399503.3_1_5:56190013-56190223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.29750744235	2	555.297507	1108.58046	1.1412	0.00063369	1.9099	0.0010606	3.0511	0.0016943	555.2988701386336	33.961	0.072384	33.96	33.96	34.032	-0.0012474	1221	46	0.885486	0.027605891	0.88396657	359.08014	0	11.194672						70	4	2	NaN	NaN	NaN	0.62619	1	12861	12861		4.4131	1.2015	1	6400.4			14347	6822	8336	8501	11298	11298					0.03051493900238711
LLYHTFFFLPL	11	Unmodified	_LLYHTFFFLPL_					0	0	0			REV__tr|U7SYI2|U7SYI2_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00889PE=4SV=1	REV__tr|U7SYI2|U7SYI2_FUSNUTypeIVsecretionsystemproteinVirB3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00889PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.8946490082501	2	705.894649	1409.77475	0.66753	0.0004712	-4.0381	-0.0028505	-3.3706	-0.0023793	705.8914090106805	33.044	0.16875	33.042	32.993	33.162	-0.0024757	1041	43	0.9955231	0.025595129	0.99400365	402.64127	0	10.35202						177	8	3	NaN	NaN	NaN	0.63005	1	19197	19197		12.049	2.4371	1	14762	+		14348	13556	8337	8502	11299	11299					0.08624870056178224
LLYLCFNRFG	10	Unmodified	_LLYLCFNRFG_					0	0	0		ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.88647635823327	3	415.886476	1244.6376	1.7073	0.00071003	5.3628	0.0022303	7.0701	0.0029404	416.2236661801061	16.038	0.23994	16.038	15.966	16.206	0	1446	91	0.7469324	0.055689216	0.7469324	453.7269	0	33.828644						309	11	2	NaN	NaN	NaN	0.62764	1	17634	17634		7.1304	0.51296	1	36554			14349	7338	8338	8503	11300	11300					0.025066379049349052
LLYLILKLLE	10	Unmodified	_LLYLILKLLE_					0	0	0		ENST00000486103.6_1_17:58031378-58035783:-|nuORF;ENSG00000189050|ENST00000305783|RNFT1	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENST00000486103.6_1_17:58031378-58035783:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1230.8071736679	1	1230.80717	1229.7999	1.655	0.002037	-4.6994	-0.005784	-3.0444	-0.003747	1230.8033156513036	40.943	0.072071	40.95	40.902	40.974	0.0074921	57	43	1.5847093	0.024711728	1.5831898	320.9275	0	5.004486						62	4	2	NaN	NaN	NaN	0.77928	1	16545	16545		0.69115	0	1	4658.1			14350	5578	8339	8504	11301	11301					0.19418924858746323
LLYPDHFHL	9	Unmodified	_LLYPDHFHL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.5379530302001	3	385.537953	1153.59203	1.6043	0.00061854	-2.6052	-0.0010044	-1.0009	-0.00038588	385.53683019911034	23.634	0.19281	23.634	23.586	23.778	0	1440	43	0.7506418	0.025962949	0.7506418	456.37418	0	15.784882						179	9	3	NaN	NaN	NaN	0.31766	1	14929	14929		11.17	4.186	1	28169			14351	411	8340	8505	11302	11302					0.021377357142455367
LLYPFCLFLLS	11	Unmodified	_LLYPFCLFLLS_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.86978531595	2	664.869785	1327.72502	1.0436	0.00069386	-5.1295	-0.0034105	-4.0859	-0.0027166	664.8668035732915	41.305	0.096264	41.305	41.257	41.353	0	1227	31	0.88180584	0.018400967	0.88180584	356.86212	0	7.446747						102	5	3	NaN	NaN	NaN	0.77797	1	19231	19231		0.59723	0	1	6589.5	+		14352	11724	8341	8506	11303	11303					0.07426419055855149
LMAFGRRKI	9	Unmodified	_LMAFGRRKI_					0	0	0			REV__nc|ENSG00000139132|Q96M96-2|FGD4	REV__nc|ENSG00000139132|Q96M96-2|FGD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.3289533440002	2	546.328953	1090.64335	1.441	0.00078729	-2.8564	-0.0015606	-1.4154	-0.00077327	546.3269024408039	24.84	0.14472	24.827	24.731	24.875	-0.012392	1365	31	0.7969414	0.018494785	0.79542196	323.239	0	7.501465						92	7	2	NaN	NaN	NaN	0.6762	1	12127	12127		1.2418	0.31598	1	9112.3	+		14353	13127	8342	8507	11304	11304					0.10165781207297186
LMAFGRRKI	9	Unmodified						0	0	0			REV__nc|ENSG00000139132|Q96M96-2|FGD4	REV__nc|ENSG00000139132|Q96M96-2|FGD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.328953	1090.64335	1.1748	0.00064183	-6.5691	-0.0035889	-5.3942	-0.002947	546.3250087163761	24.574	0.14468	24.574	24.502	24.647	0	1365	43	0.7969414	0.025898278	0.7969414	323.23904		10.5043335	-0.12642	-0.0011868	0.00075972	NaN	1.2418	171	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24766	+		14354	13127	8342	8507							0.10165781207297186
LMAFGRRKI	9	Unmodified						0	0	0			REV__nc|ENSG00000139132|Q96M96-2|FGD4	REV__nc|ENSG00000139132|Q96M96-2|FGD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.328953	1090.64335	1.441	0.00078729	-2.8564	-0.0015606	-1.4154	-0.00077327	546.3269024408039	24.84	0.14472	24.827	24.731	24.875	-0.012392	1365	31	0.7969414	0.018494785	0.79542196	323.239		7.501465	0.12642	0.0028698	-0.00075972	NaN	1.2418	92	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9112.3	+		14355	13127	8342	8507							0.10165781207297186
LMAGAGGG	8	Unmodified	_LMAGAGGG_					0	0	0		ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1548743380501	2	317.154874	632.295196	1.3372	0.00042411	0.47253	0.00014986	1.8098	0.00057397	317.1551780413644	42.938	0.28779	42.938	42.866	43.153	0	1518	85	0.7023569	0.05208397	0.7023569	287.43686	0	21.315155						297	13	2	NaN	NaN	NaN	0.84876	1	1526	1526		0.39566	0	1	33357			14356	6554	8343	8508	11305	11305					-0.03566004714150495
LMAGAGGG	8	Unmodified	_LMAGAGGG_					0	0	0		ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1548743380501	2	317.154874	632.295196	1.1082	0.00035148	2.6446	0.00083876	3.7529	0.0011902	317.1562611102628	41.377	0.072166	41.377	41.305	41.377	0	1497	121	0.71537006	0.074373364	0.71537006	292.76245	0	30.437012						199	4	2	NaN	NaN	NaN	0.84876	1	1527	1527		0.39566	0	1	22533			14357	6554	8343	8508	11306	11306					-0.03566004714150495
LMAGAGGG	8	Unmodified	_LMAGAGGG_					0	0	0		ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	ENST00000345097.8_1_14:89626539-89626743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.1548743380501	2	317.154874	632.295196	0.42026	0.00013329	2.3904	0.00075812	2.8106	0.0008914	317.1556470578192	45.692	0.47964	45.703	45.488	45.967	0.011349	1518	103	0.7023569	0.06324482	0.70083743	287.43686	0	25.88269						682	21	3	NaN	NaN	NaN	0.84876	1	1450	1450		0.39566	0	1	78741			14358	6554	8343	8508	11307	11307					-0.03566004714150495
LMAPIYTYTK	10	Unmodified	_LMAPIYTYTK_					0	0	0		nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2	nc|ENSG00000087245|P08253-2|MMP2	nc|ENSG00000087245|P08253-2|MMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8202924344	2	600.820292	1199.62603	1.4987	0.00090042	-3.7387	-0.0022463	-2.24	-0.0013459	601.3201985250959	38.994	0.048035	38.999	38.975	39.023	0.0046806	1158	28	0.92408	0.016520679	0.9225606	374.3813	0	6.6931763						44	3	2	NaN	NaN	NaN	0.76548	1	15818	15818		3.5698	0	1	3948			14359	1004	8344	8509	11308	11308					0.03420396090950817
LMAPIYTYTK	10	Unmodified						0	0	0		nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2	nc|ENSG00000087245|P08253-2|MMP2	nc|ENSG00000087245|P08253-2|MMP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.820292	1199.62603	0.4006	0.00024069	-5.8399	-0.0035087	-5.4393	-0.0032681	600.8170329542452	39.02	0.096066	39.02	38.948	39.044	0	1161	37	0.9222442	0.022031128	0.9222442	373.63754		8.92569	0.010754	-0.00091687	-0.00015819	NaN	3.5698	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9073.3			14360	1004	8344	8509							0.03420396090950817
LMCFSRVYE	9	Unmodified	_LMCFSRVYE_					0	0	0			REV__ZNF728|p.S186T|1|0.25|ENSG00000269067|chr19:22976781-22976781|A/T|missense_variant	REV__ZNF728|p.S186T|1|0.25|ENSG00000269067|chr19:22976781-22976781|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2673697944	2	574.26737	1146.52019	1.963	0.0011273	0.018218	1.0462E-05	1.9813	0.0011378	574.2674478695034	26.046	0.16899	26.035	25.987	26.156	-0.011135	1203	70	0.8965218	0.042297065	0.89500237	363.4076	0	17.145233						320	8	4	NaN	NaN	NaN	0.33629	1	14188	14188		16.584	1.4088	1	69664	+		14361	10200	8345	8510	11309	11309					-0.0472126302615834
LMCFSRVYE	9	Unmodified						0	0	0			REV__ZNF728|p.S186T|1|0.25|ENSG00000269067|chr19:22976781-22976781|A/T|missense_variant	REV__ZNF728|p.S186T|1|0.25|ENSG00000269067|chr19:22976781-22976781|A/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.26737	1146.52019	1.963	0.0011273	0.018218	1.0462E-05	1.9813	0.0011378	574.2674478695034	26.046	0.16899	26.035	25.987	26.156	-0.011135	1203	70	0.8965218	0.042297065	0.89500237	363.4076		17.145233	0.01846	0.0005062	0.0010792	NaN	16.584	320	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69664	+		14362	10200	8345	8510							-0.0472126302615834
LMDAGIFI	8	Unmodified	_LMDAGIFI_					0	0	0		MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4644521599001	1	879.464452	878.457176	0.68336	0.00060099	-1.0538	-0.00092678	-0.37044	-0.00032579	879.4640348716199	31.934	0.12065	31.93	31.906	32.027	-0.0037613	357	58	1.407258	0.033896923	1.4057386	286.25494	0	6.8950806						115	6	2	NaN	NaN	NaN	0.72043	1	5661	5661		17.78	0	1	11182			14363	7884	8346	8511	11310	11310					0.013085392481229974
LMDAGIFI	8	Unmodified						0	0	0		MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	MTMR8|p.I316L|1|0.24|ENSG00000102043|chrX:64343640-64343640|T/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	879.464452	878.457176	1.1628	0.0010227	0.8244	0.00072503	1.9872	0.0017477	879.4657787421351	31.935	0.07242	31.935	31.911	31.983	0	360	55	1.405474	0.032114625	1.405474	285.89203		6.5325317	0.0024194	0.00090673	-0.0001323	NaN	17.78	103	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11879			14364	7884	8346	8511							0.013085392481229974
LMDASQLEPGE	11	Unmodified	_LMDASQLEPGE_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2739033478	2	595.273903	1188.53325	0.76917	0.00045787	6.1234	0.0036451	6.8926	0.004103	595.2785967222915	27.18	0.1448	27.17	27.098	27.242	-0.010124	1194	94	0.902037	0.057033777	0.9005176	365.48953	0	23.10907						225	7	3	NaN	NaN	NaN	0.50669	1	15491	15491		18.233	0	1	50759			14365	4256	8347	8512	11311	11311					-0.053471534330810755
LMDEDIISL	9	Unmodified	_LMDEDIISL_					0	0	0		nc|nan|Q9HD87|C6orf50	nc|nan|Q9HD87|C6orf50	nc|nan|Q9HD87|C6orf50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5230892508	1	1048.52309	1047.51581	1.5134	0.0015869	-4.1126	-0.0043122	-2.5992	-0.0027253	1048.5197450009275	31.79	0.19307	31.79	31.718	31.911	0	162	85	1.5228153	0.049633265	1.5228153	308.989	0	10.070953						232	9	2	NaN	NaN	NaN	0.10956	1	10525	10525		34.439	4.8405	1	34364			14366	8072	8348	8513	11312	11312					-0.006044489680562037
LMDFCRGGQV	10	Unmodified	_LMDFCRGGQV_					0	0	0		ENST00000470281.1_1_2:69759171-69771619:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000470281.1_1_2:69759171-69771619:-|nuORF	ENST00000470281.1_1_2:69759171-69771619:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2626187675	2	563.262619	1124.51068	1.318	0.00074237	-0.045494	-2.5625E-05	1.2725	0.00071675	563.7639539706915	21.32	0.21647	21.306	21.234	21.45	-0.014006	1251	88	0.8670771	0.05337721	0.8655577	351.55386	0	21.641632						304	10	3	NaN	NaN	NaN	0.68732	1	13431	13431		8.9191	2.0559	1	27740			14367	2054	8349	8514	11313	11313					-0.04659031311689432
LMDIWIVY	8	Unmodified	_LMDIWIVY_					0	0	0		ENST00000485364.1_1_20:31136574-31172692:-|nuORF	ENST00000485364.1_1_20:31136574-31172692:-|nuORF	ENST00000485364.1_1_20:31136574-31172692:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7778963034501	2	526.777896	1051.54124	1.3131	0.00069171	-11.018	-0.0058039	-9.7047	-0.0051122	526.7725430643083	29.136	0.024126	29.136	29.112	29.136	0	1278	34	0.85049206	0.020281553	0.85049206	345.11917	0	8.230011						43	2	2	NaN	NaN	NaN	0.66957	1	10691	10691		20.952	1.7889	1	6315.5			14368	7233	8350	8515	11314	11314					0.017530703450347573
LMDLINFLR	9	Unmodified	_LMDLINFLR_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.8828433458	3	378.882843	1133.6267	1.4562	0.00055174	5.148	0.0019505	6.6042	0.0025022	379.21874627573567	24.743	0.072388	24.731	24.682	24.755	-0.012394	1434	52	0.75435036	0.031528115	0.7528309	458.72412	0	19.172424						72	4	2	NaN	NaN	NaN	0.29681	1	13779	13779		12.57	0	1	9135.3			14369	3148	8351	8516	11315	11315					0.06523235530653437
LMDPPMDDQ	9	Unmodified	_LMDPPMDDQ_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-4|RABGAP1;ENST00000317419.7_1_9:125719338-125751780:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.21754256185	2	531.217543	1060.42053	1.3829	0.00073463	-6.6693	-0.0035428	-5.2863	-0.0028082	531.7150050194708	32.732	0.16889	32.732	32.683	32.852	0	1293	67	0.84127116	0.040578544	0.84127116	341.34048	0	16.464478						289	8	3	NaN	NaN	NaN	0.20577	1	11094	11094		24.961	14.356	1	22229			14370	409	8352	8517	11316	11316					-0.10726125430778666
LMDPPMDDQ	9	Unmodified						0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-4|RABGAP1;ENST00000317419.7_1_9:125719338-125751780:+|nuORF	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.217543	1060.42053	0.5436	0.00028877	-3.4309	-0.0018226	-2.8873	-0.0015338	531.7163323669815	32.755	0.16894	32.752	32.679	32.848	-0.0031013	1290	82	0.84311575	0.049803615	0.8415963	342.0889		20.20752	0.0099761	0.0021223	0.00016257	NaN	24.961	233	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23155			14371	409	8352	8517							-0.10726125430778666
LMDRKQPK	8	Unmodified	_LMDRKQPK_					0	0	0			REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.28949383250006	2	508.289494	1014.56443	1.4792	0.00075185	7.3544	0.0037382	8.8336	0.00449	508.29349035647397	20.838	0.096386	20.838	20.79	20.887	0	1242	70	0.87260187	0.04237485	0.87260187	354.25772	0	17.203308						91	5	2	NaN	NaN	NaN	0.84512	1	9166	9166		2.4615	0	1	8739.2	+		14372	11859	8353	8518	11317	11317					0.05773509182347425
LMDRKQPK	8	Unmodified						0	0	0			REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.289494	1014.56443	1.4792	0.00075185	7.3544	0.0037382	8.8336	0.00449	508.29349035647397	20.838	0.096386	20.838	20.79	20.887	0	1242	70	0.87260187	0.04237485	0.87260187	354.25772		17.203308	-0.0051128	0.00083793	0.00075972	NaN	2.4615	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8739.2	+		14373	11859	8353	8518							0.05773509182347425
LMDRKQPK	8	Unmodified						0	0	0			REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	REV__ENST00000367081.7_1_6:159083965-159084001:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.289494	1014.56443	0.96174	0.00048884	5.7559	0.0029257	6.7176	0.0034145	508.2925515146182	20.863	0.048172	20.849	20.825	20.873	-0.014088	1242	73	0.87260187	0.044219613	0.8710824	354.25772		17.95224	0.0051128	-0.00078711	-0.00075972	NaN	2.4615	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7093.5	+		14374	11859	8353	8518							0.05773509182347425
LMDRSLVMWQQ	11	Unmodified	_LMDRSLVMWQQ_					0	0	0			REV__ENST00000534547.1_1_11:130165680-130166253:+|nuORF	REV__ENST00000534547.1_1_11:130165680-130166253:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.8495895776001	2	703.84959	1405.68463	1.3854	0.00097512	-2.5561	-0.0017991	-1.1706	-0.00082396	703.8478415654736	23.513	0.1688	23.513	23.417	23.586	0	1056	49	0.9863805	0.029264152	0.9863805	398.9548	0	11.836304						184	8	3	NaN	NaN	NaN	0.47586	1	20107	20107		19.336	2.4781	1	19502	+		14375	12666	8354	8519	11318	11318					-0.0019887060618657415
LMDRSLVMWQQ	11	Unmodified						0	0	0			REV__ENST00000534547.1_1_11:130165680-130166253:+|nuORF	REV__ENST00000534547.1_1_11:130165680-130166253:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	703.84959	1405.68463	1.3854	0.00097512	-2.5561	-0.0017991	-1.1706	-0.00082396	703.8478415654736	23.513	0.1688	23.513	23.417	23.586	0	1056	49	0.9863805	0.029264152	0.9863805	398.9548		11.836304	-0.005343	-0.00023901	0.0016743	NaN	19.336	184	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19502	+		14376	12666	8354	8519							-0.0019887060618657415
LMDTDVGRTN	10	Unmodified	_LMDTDVGRTN_					0	0	0		tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.5255488668001	1	1121.52555	1120.51827	1.5527	0.0017414	-9.0006	-0.010094	-7.4479	-0.008353	1121.5162250073167	30.728	0.072401	30.728	30.704	30.777	0	90	67	1.5652816	0.038882017	1.5652816	317.3366	0	7.8827515						143	4	3	NaN	NaN	NaN	0.5358	1	13696	13696		17.97	1.3855	1	11966			14377	13993	8355	8520	11319	11319					-0.03716600510392709
LMECSFVV	8	Unmodified	_LMECSFVV_					0	0	0		ENST00000563629.1_1_16:50788239-50810098:+|nuORF	ENST00000563629.1_1_16:50788239-50810098:+|nuORF	ENST00000563629.1_1_16:50788239-50810098:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.4314374720001	1	927.431437	926.424161	0.71173	0.00066008	7.3213	0.00679	8.033	0.0074501	927.4387159560289	27.301	0.16893	27.291	27.267	27.436	-0.010126	357	112	1.407258	0.06595361	1.4057386	286.0263	0	13.405151						267	8	3	NaN	NaN	NaN	0.62311	1	6387	6387		23.85	6.0515	1	45976			14378	7614	8356	8521	11320	11320					-0.041994108662379404
LMEDIEQW	8	Unmodified	_LMEDIEQW_					0	0	0		nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1;nc|ENSG00000100284|O60784-3|TOM1;ENST00000492723.1_1_22:35741624-35743199:+|nuORF	nc|ENSG00000100284|O60784-4|TOM1	nc|ENSG00000100284|O60784-4|TOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2418749379	2	532.241875	1062.4692	0.56618	0.00030134	-9.3657	-0.0049848	-8.7995	-0.0046835	532.2366503711974	32.899	0.14478	32.897	32.873	33.018	-0.0024757	1281	58	0.84864825	0.03503555	0.8471288	344.3252	0	14.215118						215	7	3	NaN	NaN	NaN	0.81251	1	10955	10955		7.5404	1.2902	1	27872			14379	1214	8357	8522	11321	11321					-0.059538887993767275
LMFMELTF	8	Unmodified	_LMFMELTF_					0	0	0			REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.4940377287999	1	1031.49404	1030.48676	1.9399	0.0020009	-10.063	-0.01038	-8.1235	-0.0083793	1031.4833814808044	28.122	0.16892	28.122	28.074	28.243	0	294	133	1.4446791	0.07821083	1.4446791	293.19766	0	15.872894						374	8	3	NaN	NaN	NaN	0.57691	1	9788	9788		26.732	3.614	1	36977	+		14380	11757	8358	8523	11322	11322					-0.02726264798070588
LMFMELTF	8	Unmodified						0	0	0			REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1031.49404	1030.48676	1.9399	0.0020009	-10.063	-0.01038	-8.1235	-0.0083793	1031.4833814808044	28.122	0.16892	28.122	28.074	28.243	0	294	133	1.4446791	0.07821083	1.4446791	293.19766		15.872894	0.0048706	-0.00042573	-0.00013022	NaN	26.732	374	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36977	+		14381	11757	8358	8523							-0.02726264798070588
LMFMELTF	8	Unmodified						0	0	0			REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	REV__ENST00000334529.9_1_3:112184817-112184898:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1031.49404	1030.48676	1.0668	0.0011004	-9.249	-0.0095403	-8.1822	-0.0084399	1031.484327023154	28.121	0.16897	28.112	28.064	28.233	-0.0089779	291	124	1.446459	0.072882056	1.4449396	293.55887		14.791443	-0.0048706	0.00041426	0.00013022	NaN	26.732	279	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28540	+		14382	11757	8358	8523							-0.02726264798070588
LMFMTLLHF	9	Unmodified	_LMFMTLLHF_					0	0	0		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8008484710001	2	576.800848	1151.58714	1.059	0.00061084	-2.317	-0.0013365	-1.258	-0.00072564	576.7990110771417	27.566	0.14478	27.557	27.412	27.557	-0.009552	1203	88	0.8965218	0.05333686	0.89500237	363.3886	0	21.61911						229	7	2	NaN	NaN	NaN	0.14945	1	14357	14357		28.667	0.17124	1	60499			14383	3622	8359	8524	11323	11323					0.017413922555988393
LMGFQLDVSPA	11	Unmodified	_LMGFQLDVSPA_					0	0	0		ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2997241678	2	589.299724	1176.5849	1.8107	0.001067	2.9887	0.0017613	4.7994	0.0028283	589.8038888335598	17.213	0.095919	17.213	17.213	17.309	0	1209	67	0.892844	0.040447116	0.892844	361.80685	0	16.39038						102	5	2	NaN	NaN	NaN	0.69656	1	15704	15704		7.6826	1.2527	1	9002.5			14384	1859	8360	8525	11324	11324					0.003666350515004524
LMGFQLDVSPA	11	Unmodified						0	0	0		ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.299724	1176.5849	1.5698	0.00092509	-3.9198	-0.0023099	-2.35	-0.0013848	589.2968660768177	17.114	0.16806	17.1	17.004	17.172	-0.013569	1215	76	0.8891654	0.04597509	0.88764596	360.31622		18.630432	-0.056491	-0.0042701	-0.002599	NaN	7.6826	145	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10622			14385	1859	8360	8525							0.003666350515004524
LMGMELFEE	9	Unmodified	_LMGMELFEE_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.74593586055	2	549.745936	1097.47732	0.63712	0.00035025	-3.9153	-0.0021524	-3.2782	-0.0018022	549.7439861665113	31.091	0.096556	31.091	31.042	31.139	0	1269	67	0.8560222	0.040539026	0.8560222	347.1752	0	16.441315						86	5	2	NaN	NaN	NaN	0.61413	1	12724	12724		4.9097	0	1	7284.2			14386	5197	8361	8526	11325	11325					-0.06752077874239149
LMGMELFEE	9	Unmodified						0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.745936	1097.47732	1.1174	0.00061431	-7.1368	-0.0039234	-6.0193	-0.0033091	549.7432504327928	31.476	0.072401	31.471	31.447	31.519	-0.0044155	1263	52	0.85970795	0.031327307	0.8581885	348.67004		12.705353	0.19032	-0.0018368	0.0010832	NaN	4.9097	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5039.3			14387	5197	8361	8526							-0.06752077874239149
LMGVPAGP	8	Unmodified	_LMGVPAGP_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3963725947001	1	741.396373	740.389096	2.2077	0.0016368	0.69122	0.00051246	2.8989	0.0021492	741.396228156129	35.167	0.096577	35.167	35.119	35.215	-4.5776E-05	567	28	1.2819146	0.0161767	1.2803952	261.50687	0	3.3000183						48	5	2	NaN	NaN	NaN	0.83849	1	3846	3846		4.0537	0	1	2448	+		14388	11950	8362	8527	11326	11326					0.00851714388113578
LMHASLDL	8	Unmodified	_LMHASLDL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS;FHOD3-MOCOS|1|fusion;ELP2-MOCOS|1|fusion	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4655147924001	1	899.465515	898.458238	1.4963	0.0013459	3.0733	0.0027643	4.5696	0.0041102	899.467935752362	29.231	0.45851	29.224	29.031	29.489	-0.0077209	357	100	1.407258	0.058904886	1.4057386	286.15665	0	11.977936						765	20	3	NaN	NaN	NaN	0.45125	1	5926	5926		33.698	0	1	118250			14389	842	8363	8528	11327	11327					0.004947536170220701
LMHYCAETQ	9	Unmodified	_LMHYCAETQ_					0	0	0			REV__ENSG00000149781|ENST00000345728|FERMT3	REV__ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.23352697705	2	548.233527	1094.4525	1.3369	0.00073294	4.177	0.00229	5.5139	0.0030229	548.7380249839869	28.507	0.072374	28.499	28.451	28.523	-0.0083485	1269	46	0.8560222	0.027641773	0.85450274	347.18707	0	11.210968						110	4	4	NaN	NaN	NaN	0.62619	1	12255	12255		4.4131	0.3594	1	7017.1	+		14390	9999	8364	8529	11328	11328					-0.09094712956971307
LMIDGKEKN	9	Unmodified	_LMIDGKEKN_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2787917604501	2	524.278792	1046.54303	1.4766	0.00077415	-5.5195	-0.0028938	-4.0429	-0.0021196	524.2758301250691	20.189	0.14414	20.189	20.117	20.261	0	1263	49	0.85970795	0.02948612	0.85970795	348.88037	0	11.965851						233	7	4	NaN	NaN	NaN	0.34922	1	10489	10489		15.822	2.0849	1	57850			14391	3524	8365	8530	11329	11329					0.021620793629836044
LMIEKFPI	8	Unmodified	_LMIEKFPI_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.78826402450005	2	495.788264	989.561975	0.80511	0.00039917	-2.2561	-0.0011186	-1.451	-0.00071941	495.7876177766006	26.818	0.072369	26.808	26.759	26.832	-0.010645	1305	40	0.83389086	0.023989916	0.8323714	338.65637	0	9.742676						105	4	3	NaN	NaN	NaN	0.55996	1	8039	8039		27.789	1.0573	1	12813	+		14392	10138	8366	8531	11330	11330					0.0667766072468794
LMILDWYF	8	Unmodified	_LMILDWYF_					0	0	0			REV__ENST00000496230.5_1_1:155247534-155253965:+|nuORF	REV__ENST00000496230.5_1_1:155247534-155253965:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.77789630345	2	550.777896	1099.54124	1.7425	0.00095974	5.535	0.0030486	7.2776	0.0040083	550.78122009044	22.404	0.096247	22.39	22.294	22.39	-0.013733	1266	49	0.85786515	0.029476583	0.8563457	347.91452	0	11.954468						56	5	2	NaN	NaN	NaN	0.84651	1	12495	12495		1.6704	0.42852	1	3957.5	+		14393	9874	8367	8532	11331	11331					-0.0045492965500670834
LMILHLDV	8	Unmodified	_LMILHLDV_					0	0	0		nc|ENSG00000205702|A0A087X1C5|CYP2D7	nc|ENSG00000205702|A0A087X1C5|CYP2D7	nc|ENSG00000205702|A0A087X1C5|CYP2D7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.27806347895	2	477.278063	952.541574	1.6843	0.00080388	-1.7059	-0.00081419	-0.021598	-1.0308E-05	477.27715979234193	22.26	0.04822	22.26	22.236	22.284	0	1317	49	0.8265074	0.02954036	0.8265074	335.8366	0	12.003204						51	3	2	NaN	NaN	NaN	0.82332	1	7156	7156		6.0903	0	1	4145.5			14394	8018	8368	8533	11332	11332					0.06340490064872029
LMITAILSL	9	Unmodified	_LMITAILSL_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5954663329002	1	974.595466	973.58819	0.83689	0.00081563	-6.8269	-0.0066535	-5.9901	-0.0058379	974.5896169714947	35.505	0.16891	35.505	35.433	35.602	0.00052643	213	91	1.4926696	0.05324638	1.4911501	303.17102	0	10.814697						207	8	2	NaN	NaN	NaN	0.078597	1	7569	7569		38.918	2.3314	1	20057	+		14395	9707	8369	8534	11333	11333					0.10033929896167137
LMKEKKTE	8	Unmodified	_LMKEKKTE_					0	0	0			REV__tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	REV__tr|U7T4Z1|U7T4Z1_FUSNUChaperoneproteinClpBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=clpBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.78370996285	2	503.78371	1005.55287	1.6094	0.00081081	0.35133	0.000177	1.9608	0.00098781	503.78354861416636	24.985	0.12066	24.985	24.936	25.057	0	1284	70	0.8468043	0.042439044	0.8468043	343.8257	0	17.231415						134	6	2	NaN	NaN	NaN	0.6053	1	8813	8813		24.961	0	1	17855	+		14396	13608	8370	8535	11334	11334					0.0503126736834929
LMKSSHLQV	9	Unmodified	_LMKSSHLQV_					0	0	0		ENST00000261211.7_1_12:96704951-96707196:-|nuORF	ENST00000261211.7_1_12:96704951-96707196:-|nuORF	ENST00000261211.7_1_12:96704951-96707196:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7893266570001	2	521.789327	1041.5641	1.0994	0.00057363	5.9976	0.0031295	7.097	0.0037031	521.7914368478442	35.844	0.072334	35.844	35.771	35.844	0	1287	49	0.8449601	0.02951163	0.8449601	342.91675	0	11.976929						78	4	2	NaN	NaN	NaN	0.41766	1	10287	10287		13.003	0.41496	1	6685.9			14397	6300	8371	8536	11335	11335					0.04498089462481403
LMLFSIDFL	9	Unmodified	_LMLFSIDFL_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7988287108001	2	549.798829	1097.5831	1.1206	0.00061611	-9.4153	-0.0051765	-8.2947	-0.0045604	549.7901340178156	26.625	0.12063	26.614	26.566	26.687	-0.010643	1215	61	0.8891654	0.036801934	0.88764596	360.6166	0	14.925659						240	6	4	NaN	NaN	NaN	0.20577	1	12421	12421		24.961	4.4056	1	26624	+		14398	8391	8372	8537	11336	11336					0.03821626033550274
LMLICLRNR	9	Unmodified	_LMLICLRNR_					0	0	0		SLC44A5|p.F345C|1|0.49|ENSG00000137968|chr1:75222412-75222412|A/C|missense_variant	SLC44A5|p.F345C|1|0.49|ENSG00000137968|chr1:75222412-75222412|A/C|missense_variant	SLC44A5|p.F345C|1|0.49|ENSG00000137968|chr1:75222412-75222412|A/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.3280960642501	2	566.328096	1130.64164	1.6379	0.00092757	-1.8208	-0.0010312	-0.18298	-0.00010363	566.324584333751	29.184	0.19305	29.184	29.16	29.353	0	1185	49	0.90755045	0.02939701	0.90755045	367.93948	0	11.918152						164	9	2	NaN	NaN	NaN	0.47587	1	14116	14116		10.605	0.99332	1	30549			14399	13676	8373	8538	11337	11337					0.08154404127026282
LMLIEDMLA	9	Unmodified	_LMLIEDMLA_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000489156.1_1_6:152599163-152623219:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5417162029	1	1048.54172	1047.53444	1.3436	0.0014089	-2.6867	-0.0028171	-1.3431	-0.0014083	1048.5389523624522	36.95	0.16816	36.952	36.904	37.072	0.0022507	120	106	1.5476005	0.061939836	1.5460811	314.01797	0	12.567993						411	8	3	NaN	NaN	NaN	0.11467	1	10315	10315		33.698	0	1	49428	+		14400	9503;12448	8374	8539	11338	11338					0.012573894021443266
LMLSVPFLV	9	Unmodified	_LMLSVPFLV_					0	0	0		SSTR1|p.V181Rfs*69|1|0.18|ENSG00000139874|chr14:38209924-38209925|-/T|frameshift_variant;ENSG00000139874|ENST00000267377|SSTR1	SSTR1|p.V181Rfs*69|1|0.18|ENSG00000139874|chr14:38209924-38209925|-/T|frameshift_variant	SSTR1|p.V181Rfs*69|1|0.18|ENSG00000139874|chr14:38209924-38209925|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.8039140887	2	509.803914	1017.59328	1.6161	0.0008239	-1.0623	-0.00054157	0.55379	0.00028233	509.80309007794546	29.377	0.096512	29.377	29.353	29.449	0	1257	85	0.86339295	0.051567256	0.86339295	350.50516	0	20.934357						254	5	3	NaN	NaN	NaN	0.61413	1	9292	9292		4.9097	0	1	41945			14401	3241	8375	8540	11339	11339					0.08518233758775295
LMMDCYLTH	9	Unmodified	_LMMDCYLTH_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.74013058865	2	563.740131	1125.46571	1.6393	0.00092412	2.6596	0.0014993	4.2989	0.0024235	563.7422838552354	29.328	0.096516	29.32	29.32	29.417	-0.0077209	1218	40	0.8873258	0.023922563	0.8858064	359.75992	0	9.699219						54	5	2	NaN	NaN	NaN	0.62619	1	13456	13456		4.4131	0.84331	1	3957.2			14402	2163	8376	8541	11340	11340					-0.09200598169240948
LMMDCYLTH	9	Unmodified						0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.740131	1125.46571	1.611	0.00090817	2.2924	0.0012923	3.9034	0.0022005	563.7411671232321	29.28	0.072382	29.28	29.28	29.353	0	1224	43	0.883646	0.025761366	0.883646	358.26797		10.444733	-0.019882	-0.00016002	-0.0010802	NaN	4.4131	87	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5876.6			14403	2163	8376	8541							-0.09200598169240948
LMMPPAHY	8	Unmodified	_LMMPPAHY_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.4477562382	1	959.447756	958.44048	1.8204	0.0017465	4.5312	0.0043475	6.3516	0.006094	959.4526327890541	26.312	0.072435	26.312	26.288	26.36	0	294	46	1.4446791	0.026700974	1.4446791	293.48853	0	5.424347						81	4	2	NaN	NaN	NaN	0.83849	1	7289	7289		4.0537	0.84207	1	7731.9			14404	5672	8377	8542	11341	11341					-0.04040284909501679
LMMQPVGFIV	10	Unmodified	_LMMQPVGFIV_					0	0	0			REV__ENSG00000150756|ENST00000511437|ATPSCKMT	REV__ENSG00000150756|ENST00000511437|ATPSCKMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.87317936496663	3	378.873179	1133.59771	2.0906	0.00079207	-0.85956	-0.00032566	1.231	0.0004664	378.87318904195854	18.221	0.16782	18.221	18.173	18.34	0	1416	37	0.76547134	0.022234678	0.76547134	465.48697	0	13.520996						199	8	4	NaN	NaN	NaN	0.57325	1	14226	14226		8.9191	1.7887	1	23813	+		14405	10013	8378	8543	11342	11342					0.03625374910029677
LMMQPVGFIV	10	Unmodified						0	0	0			REV__ENSG00000150756|ENST00000511437|ATPSCKMT	REV__ENSG00000150756|ENST00000511437|ATPSCKMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	378.873179	1133.59771	2.0906	0.00079207	-0.85956	-0.00032566	1.231	0.0004664	378.87318904195854	18.221	0.16782	18.221	18.173	18.34	0	1416	37	0.76547134	0.022234678	0.76547134	465.48697		13.520996	-0.075538	-0.00091374	0.00075972	NaN	8.9191	199	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23813	+		14406	10013	8378	8543							0.03625374910029677
LMNIEIEPIH	10	Unmodified	_LMNIEIEPIH_					0	0	0			REV__ENSG00000103494|ENST00000647211|RPGRIP1L	REV__ENSG00000103494|ENST00000647211|RPGRIP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.82082375065	2	604.820824	1207.62709	1.1697	0.00070744	8.7458	0.0052896	9.9154	0.0059971	604.8268148649261	26.77	0.04875	26.77	26.746	26.795	0	1167	40	0.91857195	0.023873508	0.91857195	372.12167	0	9.671356						78	3	3	NaN	NaN	NaN	0.73444	1	16678	16678		5.6942	0.24423	1	7873.5	+		14407	8918	8379	8544	11343	11343					0.03158610459854572
LMNIEIEPIH	10	Unmodified						0	0	0			REV__ENSG00000103494|ENST00000647211|RPGRIP1L	REV__ENSG00000103494|ENST00000647211|RPGRIP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	604.820824	1207.62709	1.1697	0.00070744	8.7458	0.0052896	9.9154	0.0059971	604.8268148649261	26.77	0.04875	26.77	26.746	26.795	0	1167	40	0.91857195	0.023873508	0.91857195	372.12167		9.671356	-0.0065409	-0.0011846	0.00075972	NaN	5.6942	78	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7873.5	+		14408	8918	8379	8544							0.03158610459854572
LMNIEIEPIH	10	Unmodified						0	0	0			REV__ENSG00000103494|ENST00000647211|RPGRIP1L	REV__ENSG00000103494|ENST00000647211|RPGRIP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.820824	1207.62709	0.85455	0.00051685	10.228	0.0061859	11.082	0.0067027	604.827513248436	26.794	0.096535	26.783	26.759	26.856	-0.010645	1167	40	0.91857195	0.023873508	0.9170525	372.12167		9.671356	0.0065409	0.0006079	-0.00075972	NaN	5.6942	109	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8980.6	+		14409	8918	8379	8544							0.03158610459854572
LMNLLVAF	8	Unmodified	_LMNLLVAF_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5273867677001	1	920.527387	919.52011	1.5817	0.001456	0.18856	0.00017357	1.7703	0.0016296	920.5276377184634	34.686	0.072353	34.686	34.662	34.734	0	279	49	1.4535767	0.028467417	1.4535767	295.4731	0	5.7866516						79	4	2	NaN	NaN	NaN	0.77489	1	6411	6411		12.588	2.5363	1	6277.2			14410	3720	8380	8545	11344	11344					0.057131050361590496
LMNLSYLQT	9	Unmodified	_LMNLSYLQT_					0	0	0			REV__nc|ENSG00000292336|P46597-2|ASMT	REV__nc|ENSG00000292336|P46597-2|ASMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5550580811998	1	1082.55506	1081.54778	0.91544	0.00099102	1.1663	0.0012626	2.0818	0.0022536	1082.5565323804926	33.094	0.096504	33.094	33.045	33.142	0	78	94	1.5723488	0.05478549	1.5723488	318.90912	0	11.111786						211	5	2	NaN	NaN	NaN	0.25448	1	12053	12053		21.835	1.3217	1	45417	+		14411	11101	8381	8546	11345	11345					0.010269635057284177
LMNRSSNLQ	9	Unmodified	_LMNRSSNLQ_					0	0	0			REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5360539736	1	1062.53605	1061.52878	1.4963	0.0015899	-10.616	-0.011279	-9.1192	-0.0096895	1063.5292461298284	26.891	0.45855	26.88	26.687	27.145	-0.010643	150	163	1.5299006	0.09566069	1.5283811	310.37338	0	19.40686						1313	20	3	NaN	NaN	NaN	0.12328	1	10925	10925		32.453	3.5572	1	196920	+		14412	11008	8382	8547	11346	11346					0.0004742693467960635
LMNRSSNLQ	9	Unmodified						0	0	0			REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1062.53605	1061.52878	1.934	0.0020549	-11.512	-0.012232	-9.5777	-0.010177	1063.5284093016105	26.867	0.45898	26.867	26.698	27.157	0	153	169	1.5281296	0.099203706	1.5281296	310.0141		20.12564	-0.0063395	-0.00045094	-0.00012579	NaN	32.453	1272	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193640	+		14413	11008	8382	8547							0.0004742693467960635
LMNRSSNLQ	9	Unmodified						0	0	0			REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	REV__SPATA31D1|p.L895Qfs*11|1|0.15|ENSG00000214929|chr9:81993150-81993157|TTCCTTAG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1062.53605	1061.52878	1.4963	0.0015899	-10.616	-0.011279	-9.1192	-0.0096895	1063.5292461298284	26.891	0.45855	26.88	26.687	27.145	-0.010643	150	163	1.5299006	0.09566069	1.5283811	310.37338		19.40686	0.0063395	0.00050128	0.00012579	NaN	32.453	1313	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196920	+		14414	11008	8382	8547							0.0004742693467960635
LMNTWIDSL	9	Unmodified	_LMNTWIDSL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7733422418	2	546.773342	1091.53213	1.9156	0.0010474	-10.702	-0.0058516	-8.7865	-0.0048042	546.7673696534691	17.978	0.216	17.964	17.868	18.084	-0.013786	1284	49	0.8468043	0.029498875	0.8452849	343.45993	0	11.9646						219	10	3	NaN	NaN	NaN	0.21199	1	12147	12147		24.562	1.4444	1	21989			14415	2851	8383	8548	11347	11347					-0.009973230113246245
LMPLCSPWQ	9	Unmodified	_LMPLCSPWQ_					0	0	0		ENST00000441149.6_1_9:131010813-131013220:+|nuORF	ENST00000441149.6_1_9:131010813-131013220:+|nuORF	ENST00000441149.6_1_9:131010813-131013220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5110847765	1	1074.51108	1073.50381	1.2332	0.0013251	0.012902	1.3863E-05	1.2461	0.001339	1074.5135078299563	34.202	0.19295	34.201	34.153	34.346	-0.0012474	156	73	1.5263584	0.042493343	1.5248389	309.6104	0	8.619446						207	9	2	NaN	NaN	NaN	0.27442	1	11396	11396		20.555	5.3801	1	22143			14416	7006	8384	8549	11348	11348					-0.03000344192241755
LMPLCSPWQ	9	Unmodified						0	0	0		ENST00000441149.6_1_9:131010813-131013220:+|nuORF	ENST00000441149.6_1_9:131010813-131013220:+|nuORF	ENST00000441149.6_1_9:131010813-131013220:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1074.51108	1073.50381	1.2705	0.0013652	2.1156	0.0022732	3.3861	0.0036384	1074.512564943301	34.203	0.16884	34.203	34.179	34.348	0	153	76	1.5281296	0.044270873	1.5281296	309.96967		8.980011	0.0011668	0.0011496	0.0016453	NaN	20.555	171	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20178			14417	7006	8384	8549							-0.03000344192241755
LMRIEQFH	8	Unmodified	_LMRIEQFH_					0	0	0			REV__ENSG00000123454|ENST00000393056|DBH	REV__ENSG00000123454|ENST00000393056|DBH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2816688004001	2	537.281669	1072.54878	1.5435	0.00082927	-6.789	-0.0036476	-5.2455	-0.0028183	537.2782522555358	20.477	0.12023	20.477	20.453	20.573	0	1269	58	0.8560222	0.03502047	0.8560222	347.27527	0	14.207275						162	6	3	NaN	NaN	NaN	0.76633	1	11665	11665		13.737	1.6884	1	22298	+		14418	9358	8385	8550	11349	11349					0.015412226653097605
LMRWWIWS	8	Unmodified	_LMRWWIWS_					0	0	0			REV__nc|ENSG00000244694|Q6ZW05|PTCHD4	REV__nc|ENSG00000244694|Q6ZW05|PTCHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3024042425001	2	589.302404	1176.59026	1.4372	0.00084696	6.1689	0.0036353	7.6061	0.0044823	589.3066199492531	25.081	0.24127	25.069	24.876	25.117	-0.012011	1167	97	0.91857195	0.05876237	0.9170525	372.23254	0	23.812256						332	11	2	NaN	NaN	NaN	0.74229	1	15135	15135		16.417	2.3751	1	81070	+		14419	11360	8386	8551	11350	11350					0.009024034246294832
LMSLIASLL	9	Unmodified	_LMSLIASLL_					0	0	0			REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	REV__nc|ENSG00000111305|Q2KHT4-5|GSG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5798162687	1	960.579816	959.57254	0.53098	0.00051005	-5.5322	-0.0053141	-5.0012	-0.0048041	960.5746185590933	38.251	0.12012	38.251	38.203	38.324	0	222	67	1.4873441	0.039051414	1.4873441	302.15094	0	7.9332275						222	6	3	NaN	NaN	NaN	0.049695	1	7334	7334		47.04	0	1	20824	+		14420	9094	8387	8552	11351	11351					0.09113643379100722
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.29645319735	2	526.296453	1050.57835	0.86767	0.00045665	-1.6547	-0.00087087	-0.78704	-0.00041422	526.2952087875025	34.951	0.096378	34.951	34.903	34.999	0	1293	40	0.84127116	0.023976922	0.84127116	341.38144	0	9.729645						104	5	3	NaN	NaN	NaN	0.025843	1	10659	10659		64.55	9.0563	1	9138.3			14421	1139;909;8021	8388	8553	11352	11352					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5856299281	1	1051.58563	1050.57835	1.2472	0.0013115	-1.442	-0.0015163	-0.19478	-0.00020483	1051.5839219104935	35.168	0.072392	35.168	35.144	35.217	0	78	52	1.5723488	0.030034065	1.5723488	319.02756	0	6.0939026						79	4	2	NaN	NaN	NaN	0.49672	1	10660	10660		9.746	0	1	5998			14422	1139;909;8021	8388	8553	11353	11353					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.29645319735	2	526.296453	1050.57835	1.4895	0.00078393	-0.80606	-0.00042423	0.68345	0.0003597	526.2962360961319	34.155	0.2896	34.155	34.035	34.324	0	1290	76	0.84311575	0.046094477	0.84311575	342.12997	0	18.704773						614	13	6	NaN	NaN	NaN	2.6074E-07	1	10661	10661		131.88	42.621	1	398010			14423	1139;909;8021	8388	8553	11354	11354					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5856299281	1	1051.58563	1050.57835	2.2608	0.0023774	1.4788	0.0015551	3.7396	0.0039325	1051.5877498783461	34.155	0.38592	34.155	34.01	34.396	0	72	208	1.5758814	0.122136116	1.5758814	319.7443	0	24.78128						1181	17	5	NaN	NaN	NaN	7.737099999999999E-36	1	10663	10663		187.3	35.588	1	492840			14424	1139;909;8021	8388	8553	11355	11355					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.29645319735	2	526.296453	1050.57835	1.3853	0.0007291	-1.2859	-0.00067679	0.099395	5.2311E-05	526.2960848062072	34.13	0.31358	34.129	34.056	34.37	-0.0012474	1287	76	0.8449601	0.046094477	0.84344065	342.8784	0	18.704803						611	14	5	NaN	NaN	NaN	5.9172E-26	1	10440	10440		172.82	49.162	1	387430			14425	1139;909;8021	8388	8553	11356	11356					0.055087418907760366
LMSLIINTF	9	Unmodified	_LMSLIINTF_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5856299281	1	1051.58563	1050.57835	1.8159	0.0019096	2.3149	0.0024344	4.1309	0.0043439	1051.5884133631516	34.154	0.24141	34.153	34.008	34.249	-0.0012474	69	199	1.5776473	0.11680734	1.5761279	320.1026	0	23.700043						735	11	3	NaN	NaN	NaN	1.8957E-73	1	10441	10441		217.37	64.703	1	410460			14426	1139;909;8021	8388	8553	11357	11357					0.055087418907760366
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(120)SLIINTF	0	0	1		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2939105084	2	534.293911	1066.57327	1.8646	0.00099623	-1.1267	-0.000602	0.73784	0.00039422	534.2937587029603	30.922	0.31371	30.922	30.801	31.115	0	1251	91	0.8670771	0.055262625	0.8670771	351.78503	0	22.420776						943	14	4	NaN	NaN	NaN	0.00017726	1	11417	11417		118.2	41.465	1	662280			14427	1139;909;8021	8388	8554	11358	11358		98			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(160)SLIINTF	0	0	1		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5805445501999	1	1067.58054	1066.57327	1.7182	0.0018343	-0.27263	-0.00029105	1.4456	0.0015433	1067.581417125927	30.922	0.24131	30.922	30.825	31.066	0	84	175	1.5688156	0.10262704	1.5688156	318.24878	0	20.818848						995	11	5	NaN	NaN	NaN	5.1574E-18	1	11418	11418		159.67	57.621	1	443750			14428	1139;909;8021	8388	8554	11359	11359		98			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(130)SLIINTF	0	0	1		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2939105084	2	534.293911	1066.57327	1.4739	0.00078749	-1.6487	-0.00088091	-0.17486	-9.3429E-05	534.2934231924736	30.872	0.28966	30.866	30.794	31.084	-0.0057545	1248	97	0.8689189	0.05894041	0.86739945	352.53226	0	23.912903						1078	13	6	NaN	NaN	NaN	2.9468E-07	1	11151	11151		130.62	66.069	1	662860			14429	1139;909;8021	8388	8554	11360	11360		98			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(200)SLIINTF	0	0	1		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1	nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5805445501999	1	1067.58054	1066.57327	1.562	0.0016676	-0.11598	-0.00012382	1.446	0.0015438	1067.5808424287156	30.896	0.24138	30.891	30.818	31.06	-0.0057545	81	163	1.5705823	0.09552896	1.5690628	318.60718	0	19.378967						1113	11	5	NaN	NaN	NaN	2.8019E-47	1	11152	11152		201.95	75.368	1	485080			14430	1139;909;8021	8388	8554	11361	11361		98			0.04264438028144468
LMSLSEIVL	9	Oxidation (M)	_LM(Oxidation (M))SLSEIVL_		LM(1)SLSEIVL		LM(81)SLSEIVL	0	0	1			REV__ENST00000378628.8_1_X:37313020-37313074:+|nuORF	REV__ENST00000378628.8_1_X:37313020-37313074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.564560135	1	1020.56456	1019.55728	1.4706	0.0015008	-0.23785	-0.00024274	1.2327	0.0012581	1020.5640945095312	34.251	0.12051	34.249	34.225	34.346	-0.0012474	177	52	1.5139546	0.030136228	1.5124352	307.30057	0	6.116974						141	6	2	NaN	NaN	NaN	0.014046	1	9166	9166		80.639	16.089	1	36675	+		14431	11953	8389	8555	11362	11362		653			0.0482873179124681
LMTAPEYYE	9	Unmodified	_LMTAPEYYE_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000467457.5_1_3:49053892-49055376:-|nuORF	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7495327944999	2	558.749533	1115.48451	1.0811	0.00060408	1.7707	0.00098938	2.8518	0.0015935	558.7508716364922	33.094	0.19304	33.094	33.045	33.238	0	1263	55	0.85970795	0.033161104	0.85970795	348.6002	0	13.446381						353	9	6	NaN	NaN	NaN	0.29681	1	13483	13483		19.118	1.1486	1	82784			14432	5102	8390	8556	11363	11363					-0.06861022002181016
LMTDSFIF	8	Unmodified	_LMTDSFIF_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.4699314683	1	973.469931	972.462655	1.2562	0.0012229	-0.87028	-0.00084719	0.38596	0.00037572	973.4691707103887	22.187	0.14474	22.173	22.125	22.27	-0.013731	315	79	1.4322147	0.046294093	1.4306953	290.8969	0	9.4028015						245	7	2	NaN	NaN	NaN	0.72043	1	7521	7521		17.78	2.3177	1	26145	+		14433	10688	8391	8557	11364	11364					-0.024677819600810835
LMTLHIREH	9	Unmodified	_LMTLHIREH_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.87809231890003	3	383.878092	1148.61245	1.8546	0.00071193	-1.5012	-0.00057627	0.35339	0.00013566	383.87751871129603	23.152	0.14468	23.152	23.128	23.272	0	1434	40	0.75435036	0.024101853	0.75435036	458.65234	0	14.654175						130	7	3	NaN	NaN	NaN	0.49672	1	14766	14766		5.9198	0	1	17999			14434	4923	8392	8558	11365	11365					0.04408583102394914
LMTPFEPV	8	Unmodified	_LMTPFEPV_					0	0	0		ENST00000513000.5_1_4:143226647-143324119:-|nuORF	ENST00000513000.5_1_4:143226647-143324119:-|nuORF	ENST00000513000.5_1_4:143226647-143324119:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4750168462001	1	933.475017	932.46774	0.97844	0.00091335	-0.65218	-0.00060879	0.32626	0.00030456	933.4747600811809	33.504	0.096485	33.504	33.48	33.576	0	270	58	1.458913	0.03378904	1.458913	296.4971	0	6.866974						130	5	2	NaN	NaN	NaN	0.10499	1	6662	6662		63.31	13.278	1	19313			14435	7363	8393	8559	11366	11366					-0.0011947809745151972
LMTVFWIVTD	10	Unmodified	_LMTVFWIVTD_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8202924344001	2	612.820292	1223.62603	1.3672	0.00083783	-6.2047	-0.0038024	-4.8375	-0.0029645	612.8160264920338	23.296	0.07238	23.296	23.272	23.345	0	1146	52	0.93142134	0.03121245	0.93142134	377.2714	0	12.642578						95	4	3	NaN	NaN	NaN	0.69717	1	17065	17065		8.2448	0.65722	1	12604	+		14436	10119	8394	8560	11367	11367					0.023163960909869274
LMTVVYMVLFL	11	Unmodified	_LMTVVYMVLFL_					0	0	0			REV__OR2F1|p.V39M|1|0.15|ENSG00000213215|chr7:143960085-143960085|G/A|missense_variant	REV__OR2F1|p.V39M|1|0.15|ENSG00000213215|chr7:143960085-143960085|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8714707251501	2	664.871471	1327.72839	1.7983	0.0011957	-10.961	-0.0072875	-9.1624	-0.0060918	664.864477370024	29.836	0.12066	29.836	29.811	29.932	0	1092	58	0.9644182	0.03479433	0.9644182	390.2949	0	14.081055						234	6	4	NaN	NaN	NaN	0.28637	1	19228	19228		26.115	5.6016	1	29430	+		14437	13279	8395	8561	11368	11368					0.07763345838225177
LMTVVYMVLFL	11	Unmodified						0	0	0			REV__OR2F1|p.V39M|1|0.15|ENSG00000213215|chr7:143960085-143960085|G/A|missense_variant	REV__OR2F1|p.V39M|1|0.15|ENSG00000213215|chr7:143960085-143960085|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.871471	1327.72839	1.7983	0.0011957	-10.961	-0.0072875	-9.1624	-0.0060918	664.864477370024	29.836	0.12066	29.836	29.811	29.932	0	1092	58	0.9644182	0.03479433	0.9644182	390.2949		14.081055	-0.0080891	-0.00027372	-0.00015592	NaN	26.115	234	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29430	+		14438	13279	8395	8561							0.07763345838225177
LMVERLSAE	9	Unmodified	_LMVERLSAE_					0	0	0		ENST00000479572.1_1_6:90331643-90337989:+|nuORF;ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-4|ANKRD6;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6	ENST00000479572.1_1_6:90331643-90337989:+|nuORF	ENST00000479572.1_1_6:90331643-90337989:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2787917604501	2	524.278792	1046.54303	1.4613	0.00076612	-4.6484	-0.002437	-3.1871	-0.0016709	524.2760326922471	20.213	0.16853	20.198	20.126	20.295	-0.014141	1266	55	0.85786515	0.033168256	0.8563457	348.13254	0	13.460114						184	8	2	NaN	NaN	NaN	0.13602	1	10281	10281		30.61	0	1	62642			14439	2927	8396	8562	11369	11369					0.021620793629836044
LMVGGGGL	8	Unmodified	_LMVGGGGL_					0	0	0			REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3807225305001	1	703.380723	702.373446	1.2356	0.0008691	-0.13618	-9.5789E-05	1.0994	0.00077331	703.3809187990588	22.38	0.14451	22.38	22.356	22.501	0	621	64	1.2495319	0.037822247	1.2495319	255.15155	0	7.723221						172	7	3	NaN	NaN	NaN	0.71635	1	3254	3254		18.034	10.444	1	19189	+		14440	9506	8397	8563	11370	11370					0.010354278710678955
LMVGGGGL	8	Unmodified	_LMVGGGGL_					0	0	0			REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3807225305001	1	703.380723	702.373446	0.87106	0.00061269	1.1851	0.00083359	2.0562	0.0014463	703.3812329634409	22.38	0.14437	22.366	22.342	22.486	-0.013733	624	52	1.247731	0.030614734	1.2462115	254.78381	0	6.2514496						146	7	2	NaN	NaN	NaN	0.60626	1	3201	3201		24.901	12.641	1	17056	+		14441	9506	8397	8563	11371	11371					0.010354278710678955
LMVGGGGL	8	Unmodified						0	0	0			REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	703.380723	702.373446	1.2356	0.0008691	-0.13618	-9.5789E-05	1.0994	0.00077331	703.3809187990588	22.38	0.14451	22.38	22.356	22.501	0	621	64	1.2495319	0.037822247	1.2495319	255.15155		7.723221	0.0071465	-0.00037934	0.0016602	NaN	24.901	172	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19189	+		14442	9506	8397	8563							0.010354278710678955
LMVGGGGL	8	Unmodified						0	0	0			REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	REV__nc|ENSG00000131067|Q9UJ14-4|GGT7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	703.380723	702.373446	0.87106	0.00061269	1.1851	0.00083359	2.0562	0.0014463	703.3812329634409	22.38	0.14437	22.366	22.342	22.486	-0.013733	624	52	1.247731	0.030614734	1.2462115	254.78381		6.2514496	-0.0071465	0.00055003	-0.0016602	NaN	24.901	146	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17056	+		14443	9506	8397	8563							0.010354278710678955
LMVSPIIQG	9	Unmodified	_LMVSPIIQG_					0	0	0			REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.2755207900001	2	479.275521	956.536489	1.2308	0.0005899	2.6801	0.0012845	3.9109	0.0018744	479.2767374645637	28.266	0.21718	28.257	28.137	28.354	-0.0089779	1284	94	0.8468043	0.057132483	0.8452849	344.06345	0	23.213379						328	10	2	NaN	NaN	NaN	0.64666	1	7116	7116		3.5698	0.41644	1	38581	+		14444	11980	8398	8564	11372	11372					0.0564818620226788
LMVSPIIQG	9	Unmodified						0	0	0			REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	479.275521	956.536489	1.7771	0.00085173	3.2956	0.0015795	5.0727	0.0024312	479.2768679765959	28.219	0.26542	28.219	28.122	28.388	0	1287	85	0.8449601	0.051600754	0.8449601	343.31412		20.96579	-0.019282	0.00033556	-0.00016237	NaN	3.5698	303	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32765	+		14445	11980	8398	8564							0.0564818620226788
LMVSPIIQG	9	Unmodified						0	0	0			REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	REV__ENST00000392370.7_1_2:188245198-188245490:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	479.275521	956.536489	1.2308	0.0005899	2.6801	0.0012845	3.9109	0.0018744	479.2767374645637	28.266	0.21718	28.257	28.137	28.354	-0.0089779	1284	94	0.8468043	0.057132483	0.8452849	344.06345		23.213379	0.019282	-0.00025436	0.00016237	NaN	3.5698	328	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38581	+		14446	11980	8398	8564							0.0564818620226788
LMYGFHFLVWF	11	Unmodified	_LMYGFHFLVWF_					0	0	0		ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5	ENSG00000120697|ENST00000239891|ALG5	ENSG00000120697|ENST00000239891|ALG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.36520146455	2	730.365201	1458.71585	1.2322	0.00089996	-10.321	-0.0075382	-9.0889	-0.0066382	730.3583275065777	44.544	0.21623	44.544	44.496	44.712	0	1113	46	0.9515937	0.02749288	0.9515937	384.74847	0	11.115936						275	10	3	NaN	NaN	NaN	0.77743	1	20420	20420		0.69115	0.093923	1	37883			14447	2269	8399	8565	11373	11373					0.0048407049016532255
LMYGFHFLVWF	11	Unmodified	_LMYGFHFLVWF_					0	0	0		ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5	ENSG00000120697|ENST00000239891|ALG5	ENSG00000120697|ENST00000239891|ALG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.36520146455	2	730.365201	1458.71585	1.4776	0.0010792	-9.4737	-0.0069192	-7.996	-0.00584	730.3587856633327	45.694	0.28807	45.694	45.622	45.91	0	1158	58	0.92408	0.034884453	0.92408	373.62415	0	14.104492						479	13	5	NaN	NaN	NaN	0.77743	1	20421	20421		0.69115	0.093923	1	79693			14448	2269	8399	8565	11374	11374					0.0048407049016532255
LNADNIADL	9	Unmodified	_LNADNIADL_					0	0	0			REV__ENST00000471117.5_1_1:155278696-155288124:+|nuORF	REV__ENST00000471117.5_1_1:155278696-155288124:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.7456390473499	2	479.745639	957.476725	1.8897	0.00090656	-4.2961	-0.0020611	-2.4065	-0.0011545	479.74343579248875	26.384	0.096537	26.384	26.36	26.456	0	1332	40	0.8172735	0.02401328	0.8172735	332.06024	0	9.756622						109	5	3	NaN	NaN	NaN	0.11656	1	7272	7272		33.425	0	1	15482	+		14449	10211	8400	8566	11375	11375					-0.00371413207437854
LNEDIFIV	8	Unmodified	_LNEDIFIV_					0	0	0		ENST00000486256.5_1_7:6777424-6791020:+|nuORF;nc|ENSG00000122512|P54278-2|PMS2;ENSG00000122512|ENST00000265849|PMS2	ENST00000486256.5_1_7:6777424-6791020:+|nuORF	ENST00000486256.5_1_7:6777424-6791020:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5193245019	1	962.519325	961.512048	1.5609	0.0015024	-3.7822	-0.0036404	-2.2212	-0.002138	962.5161448483094	30.27	0.12063	30.27	30.198	30.318	0	276	64	1.4553556	0.0373497	1.4553556	295.6441	0	7.587311						157	6	3	NaN	NaN	NaN	0.5868	1	7371	7371		26.115	1.1539	1	11783			14450	2324	8401	8567	11376	11376					0.02975249320365947
LNENEEELKR	10	Unmodified	_LNENEEELKR_					0	0	0			REV__ENSG00000118557|ENST00000237353|PMFBP1	REV__ENSG00000118557|ENST00000237353|PMFBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3227734526499	2	637.322773	1272.63099	2.139	0.0013632	-10.628	-0.0067734	-8.489	-0.0054102	637.3164849125309	17.858	0.12	17.844	17.796	17.916	-0.013786	1125	49	0.9442611	0.029343128	0.94274163	382.3078	0	11.88031						168	6	4	NaN	NaN	NaN	0.38071	1	17461	17461		24.4	6.1667	1	23899	+		14451	9270	8402	8568	11377	11377					0.005583714872500423
LNFAINSYLFR	11	Unmodified	_LNFAINSYLFR_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.2469501727333	3	453.24695	1356.71902	0.82997	0.00037618	-7.3837	-0.0033467	-6.5538	-0.0029705	453.2440303819725	29.714	0.16887	29.707	29.659	29.828	-0.0070648	1371	55	0.79324204	0.03328693	0.7917226	481.42163	0	20.201965						196	8	4	NaN	NaN	NaN	0.66717	1	18742	18742		4.5433	0	1	33459	+		14452	9621	8403	8569	11378	11378					0.05493036868551826
LNFAYYLH	8	Unmodified	_LNFAYYLH_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7636348352501	2	520.763635	1039.51272	1.763	0.0009181	-11.623	-0.006053	-9.8604	-0.0051349	520.7573605426904	26.481	0.16895	26.481	26.432	26.601	0	1275	58	0.85233563	0.03503555	0.85233563	345.919	0	14.219147						176	8	4	NaN	NaN	NaN	0.75682	1	10184	10184		15.013	2.0101	1	22088			14453	1463	8404	8570	11379	11379					-0.005459112399194055
LNFEKQKYLK	10	Unmodified	_LNFEKQKYLK_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.8769875713501	2	655.876988	1309.73942	0.7491	0.00049131	8.2755	0.0054277	9.0246	0.005919	655.8822164869847	32.997	0.096565	32.997	32.949	33.045	0	1008	40	1.0156195	0.023734927	1.0156195	411.07385	0	9.6067505						77	5	2	NaN	NaN	NaN	0.77928	1	18944	18944		0.69115	0.24532	1	6233.3			14454	2251	8405	8571	11380	11380					0.09694207528377774
LNFNVACV	8	Unmodified	_LNFNVACV_					0	0	0			REV__ENST00000450217.2_1_11:3427793-3430002:+|nuORF	REV__ENST00000450217.2_1_11:3427793-3430002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4393000419001	1	879.4393	878.432024	1.422	0.0012506	-5.1702	-0.0045469	-3.7482	-0.0032963	879.4341382286252	29.135	0.096552	29.127	29.103	29.2	-0.0077229	390	46	1.3876231	0.02679205	1.3861036	282.26108	0	5.4498596						64	5	2	NaN	NaN	NaN	0.77489	1	5654	5654		12.588	2.8419	1	5315.6	+		14455	12230	8406	8572	11381	11381					-0.012055155544544505
LNGEAGGG	8	Unmodified	_LNGEAGGG_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3103943589002	1	674.310394	673.303118	1.395	0.00094069	0.86339	0.0005822	2.2584	0.0015229	674.3105234245344	55.604	0.12015	55.604	55.556	55.677	0	603	67	1.2603331	0.03960848	1.2603331	257.56952	0	8.094635						184	6	3	NaN	NaN	NaN	0.84455	1	2670	2670		2.7852	0	1	13520			14456	4865	8407	8573	11382	11382					-0.046601541930272106
LNGEAGGG	8	Unmodified						0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	674.310394	673.303118	-0.25291	-0.00017054	3.467	0.0023378	3.2141	0.0021673	674.3127169180071	55.578	0.07206	55.578	55.554	55.626	-0.00059128	600	55	1.2621325	0.032400012	1.2606131	257.93726		6.6214905	-0.013378	0.0011985	0.00014004	NaN	2.7852	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4119.7			14457	4865	8407	8573							-0.046601541930272106
LNGFVTVL	8	Unmodified	_LNGFVTVL_					0	0	0			REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	862.5032805072	1	862.503281	861.496004	1.4434	0.001245	-1.4166	-0.0012218	0.026889	2.3192E-05	862.5015921441092	31.573	0.048294	31.573	31.549	31.597	0	369	37	1.4001206	0.02141881	1.4001206	284.88956	0	4.358185						35	3	2	NaN	NaN	NaN	0.79607	1	5554	5554		9.746	0.62279	1	2271.7	+		14458	8896	8408	8574	11383	11383					0.059715878741258166
LNGFVTVL	8	Unmodified						0	0	0			REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	862.503281	861.496004	1.4434	0.001245	-1.4166	-0.0012218	0.026889	2.3192E-05	862.5015921441092	31.573	0.048294	31.573	31.549	31.597	0	369	37	1.4001206	0.02141881	1.4001206	284.88956		4.358185	0.0027441	-0.0014483	-0.00013259	NaN	9.746	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2271.7	+		14459	8896	8408	8574							0.059715878741258166
LNGVGGPP	8	Unmodified	_LNGVGGPP_					0	0	0			REV__nc|ENSG00000204248|P13942-5|COL11A2	REV__nc|ENSG00000204248|P13942-5|COL11A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3831653715	1	710.383165	709.375889	0.85646	0.00060841	5.6639	0.0040235	6.5203	0.0046319	710.3875392174602	27.687	0.1689	27.677	27.629	27.798	-0.009552	618	115	1.2513325	0.068488	1.2498131	255.47098	0	13.982437						282	8	3	NaN	NaN	NaN	0.84207	1	3351	3351		3.5732	0	1	46941	+		14460	11230	8409	8575	11384	11384					0.009575996003718501
LNISKLSDSSD	11	Unmodified	_LNISKLSDSSD_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7985998646001	2	589.7986	1177.58265	1.8388	0.0010845	3.1087	0.0018335	4.9475	0.002918	590.3032878849651	22.887	0.12062	22.887	22.814	22.935	0	1173	58	0.91489893	0.034892023	0.91489893	370.74054	0	14.13916						128	6	2	NaN	NaN	NaN	0.73057	1	15747	15747		5.4499	0.54019	1	13747	+		14461	10101	8410	8576	11385	11385					0.0009587784738869232
LNKESFTW	8	Unmodified	_LNKESFTW_					0	0	0		ENST00000477401.5_1_7:14660999-14880939:-|nuORF;ENST00000403963.5_1_7:14249142-14880939:-|nuORF	ENST00000477401.5_1_7:14660999-14880939:-|nuORF	ENST00000477401.5_1_7:14660999-14880939:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7585494573501	2	512.758549	1023.50255	2.2328	0.0011449	-1.5179	-0.0007783	0.71497	0.00036661	512.757616921691	23.248	0.1206	23.248	23.224	23.345	0	1320	43	0.824661	0.025850594	0.824661	334.75568	0	10.493561						92	6	2	NaN	NaN	NaN	0.67593	1	9497	9497		20.555	0.10679	1	8630.9			14462	6840	8411	8577	11386	11386					-0.008265189651297078
LNKYKELI	8	Unmodified	_LNKYKELI_					0	0	0			REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	REV__tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.80804233890007	2	510.808042	1019.60153	2.2853	0.0011674	-3.6532	-0.0018661	-1.3679	-0.00069872	510.80686281348386	25.877	0.096512	25.877	25.853	25.95	0	1284	49	0.8468043	0.029502094	0.8468043	343.76178	0	11.97641						146	5	3	NaN	NaN	NaN	0.528	1	9365	9365		29.598	0.70274	1	27557	+		14463	13457	8412	8578	11387	11387					0.09251503999769284
LNLAPSPA	8	Unmodified	_LNLAPSPA_					0	0	0		ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	ENSG00000214562|ENST00000381697|NUTM2D	ENSG00000214562|ENST00000381697|NUTM2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4406802504001	1	782.44068	781.433404	0.97839	0.00076553	3.6634	0.0028664	4.6418	0.0036319	782.4438590806541	32.127	0.16891	32.123	32.075	32.244	-0.0037575	483	70	1.3321642	0.04123032	1.3306447	271.498	0	8.4028015						249	8	3	NaN	NaN	NaN	0.74229	1	4431	4431		16.417	0	1	37671			14464	5378	8413	8579	11388	11388					0.033944418059491
LNLGNELF	8	Unmodified	_LNLGNELF_					0	0	0			REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.4883587245001	1	919.488359	918.481082	1.4758	0.001357	-0.97478	-0.0008963	0.50101	0.00046067	919.4878299725173	29.546	0.12064	29.546	29.522	29.642	0	339	55	1.4179583	0.032087207	1.4179583	288.23767	0	6.522583						156	6	3	NaN	NaN	NaN	0.13059	1	6390	6390		58.235	16.451	1	17189	+		14465	9902	8414	8580	11389	11389					0.018580960061512997
LNLNSSFWN	9	Unmodified	_LNLNSSFWN_					0	0	0		ENST00000409612.5_1_2:131865137-131865215:+|nuORF	ENST00000409612.5_1_2:131865137-131865215:+|nuORF	ENST00000409612.5_1_2:131865137-131865215:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7669058057	2	547.766906	1093.51926	1.555	0.00085176	-10.368	-0.0056791	-8.8128	-0.0048273	548.2624874691927	34.517	0.21716	34.517	34.421	34.638	0	1278	76	0.85049206	0.046064615	0.85049206	344.94788	0	18.683167						503	10	6	NaN	NaN	NaN	0.13602	1	12535	12535		30.61	0.57471	1	63523			14466	6862	8415	8581	11390	11390					-0.023760180791896346
LNLSGSHG	8	Unmodified	_LNLSGSHG_					0	0	0			REV__ENST00000540200.5_1_17:26674994-26675081:-|nuORF	REV__ENST00000540200.5_1_17:26674994-26675081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3947926903	1	784.394793	783.387516	2.0115	0.0015778	-8.6728	-0.0068029	-6.6613	-0.0052251	784.3884443161056	28.194	0.072382	28.194	28.17	28.243	0	522	37	1.3088527	0.02153325	1.3088527	266.73563	0	4.388336						75	4	2	NaN	NaN	NaN	0.80071	1	4543	4543		9.1232	0	1	5395.7	+		14467	12691	8416	8582	11391	11391					-0.012842033762922256
LNMWYHYEERG	11	Unmodified	_LNMWYHYEERG_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.8908376521666	3	499.890838	1496.65068	1.8824	0.000941	-2.7601	-0.0013798	-0.87769	-0.00043875	499.89088962603347	23.995	0.048239	23.982	23.958	24.006	-0.013048	1338	28	0.81357855	0.016628146	0.8120591	493.29868	0	10.082184						43	3	2	NaN	NaN	NaN	0.78074	1	19557	19557		0.019562	0	1	3758.6	+		14468	8657	8417	8583	11392	11392					-0.07777575773616263
LNPASQPQ	8	Unmodified	_LNPASQPQ_					0	0	0		ENSG00000172771|ENST00000505956|EFCAB12	ENSG00000172771|ENST00000505956|EFCAB12	ENSG00000172771|ENST00000505956|EFCAB12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.4366575050001	1	854.436658	853.429381	0.73319	0.00062647	7.5932	0.0064879	8.3264	0.0071144	854.4430614893058	33.454	0.072403	33.452	33.404	33.476	-0.0018501	390	43	1.3876231	0.025004506	1.3861036	282.38846	0	5.088562						75	4	2	NaN	NaN	NaN	0.65542	1	5301	5301		21.835	2.5503	1	6583.2			14469	4853	8418	8584	11393	11393					-0.0031964768776333585
LNQSLLLP	8	Unmodified	_LNQSLLLP_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS;ENST00000485694.1_1_2:15307174-15319276:-|nuORF	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.2738353808001	2	449.273835	896.533118	2.6583	0.0011943	-2.1172	-0.00095119	0.54114	0.00024312	449.2720602344954	18.218	0.047962	18.204	18.204	18.252	-0.01395	1386	28	0.78399014	0.016656995	0.7824707	318.8434	0	6.7742615						44	3	2	NaN	NaN	NaN	0.81756	1	5902	5902		6.8632	0	1	2840.5			14470	3753	8419	8585	11394	11394					0.08071259419921262
LNRIYEEHQ	9	Unmodified	_LNRIYEEHQ_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3016440800501	2	601.301644	1200.58874	1.0284	0.00061835	1.0636	0.00063954	2.0919	0.0012579	601.301995593394	32.539	0.048248	32.539	32.514	32.563	0	1008	133	1.0156195	0.08031207	1.0156195	411.46378	0	32.537323						192	3	3	NaN	NaN	NaN	0.68801	1	16496	16496		0.23014	0	1	16399	+		14471	9569	8420	8586	11395	11395					-0.0035355913041712483
LNSAANKLIP	10	Unmodified	_LNSAANKLIP_					0	0	0		nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.6098708437	1	1040.60987	1039.60259	1.2915	0.001344	-5.1646	-0.0053744	-3.8731	-0.0040304	1040.6046788847937	34.636	0.14465	34.636	34.587	34.732	-0.0006485	150	118	1.5299006	0.069033384	1.5283811	310.45737	0	14.0086975						295	7	2	NaN	NaN	NaN	0.22448	1	9992	9992		33.425	4.7588	1	70886			14472	7896	8421	8587	11396	11396					0.08437718368668357
LNSSGGGG	8	Unmodified	_LNSSGGGG_					0	0	0			REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	REV__tr|U7T603|U7T603_FUSNUSerineproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00149PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	324.65101038065006	2	324.65101	647.287468	1.1304	0.00036698	3.1855	0.0010342	4.3159	0.0014012	324.653733855512	34.999	0.072269	34.999	34.951	35.023	0	1542	118	0.6874725	0.07251793	0.6874725	281.20807	0	29.663177						240	4	4	NaN	NaN	NaN	0.84897	1	1989	1989		0.27539	0	1	46211	+		14473	13622	8422	8588	11397	11397					-0.05028440710077575
LNSSYTNY	8	Unmodified	_LNSSYTNY_					0	0	0			REV__ENST00000478546.1_1_13:22255254-22275571:+|nuORF	REV__ENST00000478546.1_1_13:22255254-22275571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.4261523982001	1	961.426152	960.418876	1.5722	0.0015115	-7.2636	-0.0069834	-5.6914	-0.0054719	961.4195463834591	55.1	0.048161	55.1	55.076	55.124	0	183	46	1.510409	0.026593566	1.510409	306.8327	0	5.4023438						79	3	3	NaN	NaN	NaN	0.80692	1	7339	7339		8.2903	0	1	6106.9	+		14474	8887	8423	8589	11398	11398					-0.06291675132843011
LNTADWLL	8	Unmodified	_LNTADWLL_					0	0	0		nc|ENSG00000112319|O95677-3|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-3|EYA4	nc|ENSG00000112319|O95677-3|EYA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.25564262765005	2	473.255643	944.496732	0.97218	0.00046009	8.164	0.0038637	9.1362	0.0043237	473.2598007004451	24.019	0.072351	24.006	23.982	24.055	-0.012747	1323	46	0.8228144	0.027701616	0.82129496	334.3765	0	11.257416						75	4	3	NaN	NaN	NaN	0.76406	1	6793	6793		14.042	0	1	5292.6			14475	1868	8424	8590	11399	11399					0.022263825232016643
LNTADWLL	8	Unmodified						0	0	0		nc|ENSG00000112319|O95677-3|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	nc|ENSG00000112319|O95677-3|EYA4	nc|ENSG00000112319|O95677-3|EYA4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.255643	944.496732	1.2522	0.00059261	9.6749	0.0045787	10.927	0.0051713	473.26007650103753	23.995	0.12059	23.995	23.971	24.092	0	1326	40	0.8209676	0.024008036	0.8209676	333.626		9.756439	-0.0055685	0.00075676	-0.00016367	NaN	14.042	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5820.6			14476	1868	8424	8590							0.022263825232016643
LNVENSGFRT	10	Unmodified	_LNVENSGFRT_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7883695293001	2	568.78837	1135.56219	1.9381	0.0011024	-1.3874	-0.00078913	0.55074	0.00031325	568.7877389352616	22.332	0.096506	22.332	22.284	22.38	0	1221	94	0.885486	0.05701524	0.885486	358.97537	0	23.113953						178	5	2	NaN	NaN	NaN	0.58645	1	14299	14299		15.822	5.217	1	50066			14477	517	8425	8591	11400	11400					-0.00017248021754312504
LNVSYIWPAG	10	Unmodified	_LNVSYIWPAG_					0	0	0			REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2952991044001	2	560.295299	1118.57605	1.4118	0.00079105	-1.6334	-0.0009152	-0.22159	-0.00012416	560.2942951932159	24.092	0.048302	24.092	24.092	24.14	0	1071	103	0.977233	0.062159598	0.977233	396.2417	0	25.204071						164	3	3	NaN	NaN	NaN	0.77832	1	13623	13623		0.92586	0	1	15630	+		14478	11635	8426	8592	11401	11401					0.02150029477343196
LNVSYIWPAG	10	Unmodified						0	0	0			REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.295299	1118.57605	1.4118	0.00079105	-1.6334	-0.0009152	-0.22159	-0.00012416	560.2942951932159	24.092	0.048302	24.092	24.092	24.14	0	1071	103	0.977233	0.062159598	0.977233	396.2417		25.204071	-0.017674	-7.9531E-05	-0.0019848	NaN	0.92586	164	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15630	+		14479	11635	8426	8592							0.02150029477343196
LNVSYIWPAG	10	Unmodified						0	0	0			REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	REV__ENST00000296550.11_1_4:151178265-151178463:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.295299	1118.57605	1.4194	0.00079526	-1.5278	-0.00085604	-0.10848	-6.0778E-05	560.2941252606676	24.14	0.072359	24.127	24.103	24.175	-0.012749	1062	118	0.9827221	0.0712893	0.98120266	398.46738		28.905884	0.017674	3.8796E-05	0.0019848	NaN	0.92586	159	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15317	+		14480	11635	8426	8592							0.02150029477343196
LNWTSSLLIWT	11	Unmodified	_LNWTSSLLIWT_					0	0	0		ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3611703316501	2	667.36117	1332.70779	1.3054	0.00087115	-3.2596	-0.0021753	-1.9542	-0.0013042	667.3587613070729	32.466	0.12066	32.466	32.418	32.539	0	1077	55	0.9735726	0.032943487	0.9735726	393.98447	0	13.331543						182	6	3	NaN	NaN	NaN	0.6011	1	19301	19301		13.949	1.9001	1	22739			14481	6521	8427	8593	11402	11402					0.054742147744264
LNWTSSLLIWT	11	Unmodified	_LNWTSSLLIWT_					0	0	0		ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	ENST00000336079.7_1_Y:15016869-15019466:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3611703316501	2	667.36117	1332.70779	1.0578	0.00070596	-3.155	-0.0021055	-2.0971	-0.0013995	667.3586797760271	32.441	0.12062	32.438	32.39	32.51	-0.0031052	1077	58	0.9735726	0.0347718	0.9720532	393.98447	0	14.071442						180	6	4	NaN	NaN	NaN	0.21983	1	18436	18436		28.495	6.6603	1	21185			14482	6521	8427	8593	11403	11403					0.054742147744264
LPAADTWISL	10	Unmodified	_LPAADTWISL_					0	0	0		ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.5829873912	1	1086.58299	1085.57571	1.5788	0.0017155	0.68953	0.00074923	2.2683	0.0024647	1086.583751012545	31.887	0.26549	31.887	31.839	32.104	0	99	130	1.5599792	0.076081395	1.5599792	316.3855	0	15.430389						598	12	4	NaN	NaN	NaN	0.10964	1	12208	12208		44.638	20.076	1	155290			14483	7432	8428	8594	11404	11404					0.03634609757477847
LPAADTWISL	10	Unmodified	_LPAADTWISL_					0	0	0		ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	ENST00000527156.1_3_1:90309067-90309214:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.5829873912	1	1086.58299	1085.57571	0.80645	0.00087628	0.40555	0.00044066	1.212	0.0013169	1086.583019050945	31.886	0.1689	31.881	31.833	32.002	-0.0044155	96	118	1.5617468	0.06896758	1.5602274	316.744	0	13.987579						583	8	4	NaN	NaN	NaN	0.013201	1	11899	11899		67.154	27.696	1	151200			14484	7432	8428	8594	11405	11405					0.03634609757477847
LPAAGVGDM	9	Unmodified	_LPAAGVGDM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENST00000405810.2_1_7:20867052-20867190:+|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.4076655625	1	830.407666	829.400389	1.6532	0.0013728	1.0126	0.00084091	2.6658	0.0022137	830.4083339122793	21.296	0.14437	21.296	21.248	21.392	0	486	49	1.3303722	0.028674245	1.3303722	270.86197	0	5.838043						126	7	3	NaN	NaN	NaN	0.032417	1	5128	5128		55.947	22.249	1	11651			14485	2468	8429	8595	11406	11406					-0.021135083084118378
LPAAGVGDM	9	Unmodified	_LPAAGVGDM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENST00000405810.2_1_7:20867052-20867190:+|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	830.4076655625	1	830.407666	829.400389	1.3367	0.00111	-0.037536	-3.117E-05	1.2991	0.0010788	830.4067871133465	21.296	0.12023	21.282	21.234	21.354	-0.014006	483	52	1.3321642	0.030464768	1.3306447	271.22684	0	6.2025757						108	6	2	NaN	NaN	NaN	0.024986	1	5014	5014		65.672	37.006	1	10647			14486	2468	8429	8595	11407	11407					-0.021135083084118378
LPAAGVGDM	9	Oxidation (M)	_LPAAGVGDM(Oxidation (M))_		LPAAGVGDM(1)		LPAAGVGDM(65)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF;ENST00000405810.2_1_7:20867052-20867190:+|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4025801846001	1	846.40258	845.395304	1.8663	0.0015796	-0.72726	-0.00061555	1.139	0.00096406	846.4021526611446	17.237	0.1199	17.237	17.189	17.309	0	504	58	1.3196158	0.034074306	1.3196158	268.58914	0	6.9353333						134	6	2	NaN	NaN	NaN	0.025843	1	5328	5328		64.55	39.589	1	13555			14487	2468	8429	8596	11408	11408		286			-0.03357812171020669
LPAAGVGDMV	10	Unmodified	_LPAAGVGDMV_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4760794787001	1	929.476079	928.468803	1.6628	0.0015455	-1.3324	-0.0012384	0.33042	0.00030712	929.4748146507421	24.333	0.12065	24.333	24.285	24.406	0	342	91	1.4161754	0.05348444	1.4161754	287.82953	0	10.870392						260	6	3	NaN	NaN	NaN	0.10964	1	6558	6558		44.638	19.677	1	43331			14488	2468	8430	8597	11409	11409					0.0017073627144554848
LPAAGVGDMV	10	Unmodified	_LPAAGVGDMV_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4760794787001	1	929.476079	928.468803	1.1025	0.0010247	0.31033	0.00028844	1.4128	0.0013132	929.4762029746777	24.333	0.096539	24.32	24.296	24.393	-0.012749	342	70	1.4161754	0.041011214	1.4146559	287.8295	0	8.335297						166	5	2	NaN	NaN	NaN	0.0044365	1	6429	6429		78.398	47.607	1	33961			14489	2468	8430	8597	11410	11410					0.0017073627144554848
LPAAGVGDMV	10	Oxidation (M)	_LPAAGVGDM(Oxidation (M))V_		LPAAGVGDM(1)V		LPAAGVGDM(44)V	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.2391352837	2	473.239135	944.463718	1.2477	0.00059047	-2.0461	-0.0009683	-0.7984	-0.00037783	473.2385287957324	20.261	0.12016	20.261	20.189	20.309	0	1371	43	0.79324204	0.025898278	0.79324204	322.35904	0	10.524567						136	6	3	NaN	NaN	NaN	0.11208	1	6930	6930		44.302	25.018	1	15047			14490	2468	8430	8598	11411	11411		286			-0.010735675911632825
LPAAGVGDMVM	11	Unmodified	_LPAAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7619202757501	2	530.76192	1059.50929	1.4553	0.00077244	-1.6229	-0.0008614	-0.16759	-8.8952E-05	530.7609978965835	26.891	0.26546	26.891	26.843	27.109	0	1290	70	0.84311575	0.042411506	0.84311575	342.09265	0	17.208405						288	12	3	NaN	NaN	NaN	0.5528	1	11054	11054		16.584	6.5326	1	33689			14491	2468	8431	8599	11412	11412					-0.018086654004264346
LPAAGVGDMVM	11	Unmodified	_LPAAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5165640849	1	1060.51656	1059.50929	2.0338	0.0021569	-0.20953	-0.00022221	1.8243	0.0019347	1060.5160767947493	26.867	0.50722	26.867	26.746	27.253	0	168	124	1.5192716	0.0726428	1.5192716	308.22458	0	14.737518						650	22	2	NaN	NaN	NaN	2.7937E-18	1	11056	11056		136.74	103.04	1	308410			14492	2468	8431	8599	11413	11413					-0.018086654004264346
LPAAGVGDMVM	11	Unmodified	_LPAAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7619202757501	2	530.76192	1059.50929	0.68335	0.0003627	-1.0013	-0.00053144	-0.31793	-0.00016875	530.7617243794843	26.891	0.1207	26.88	26.832	26.952	-0.010643	1290	79	0.84311575	0.047956467	0.8415963	342.09265	0	19.458221						212	6	3	NaN	NaN	NaN	0.40602	1	10821	10821		21.835	6.8221	1	27057			14493	2468	8431	8599	11414	11414					-0.018086654004264346
LPAAGVGDMVM	11	Unmodified	_LPAAGVGDMVM_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5165640849	1	1060.51656	1059.50929	1.7337	0.0018386	-0.3704	-0.00039282	1.3633	0.0014458	1060.516296957265	26.891	0.33788	26.88	26.808	27.145	-0.010643	165	145	1.5210435	0.08507693	1.5195241	308.58408	0	17.26007						628	15	2	NaN	NaN	NaN	0.0034125	1	10822	10822		75.698	48.967	1	285080			14494	2468	8431	8599	11415	11415					-0.018086654004264346
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.995)VM(0.005)		LPAAGVGDM(23)VM(-23)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7593775868	2	538.759378	1075.5042	2.5073	0.0013509	-1.5009	-0.00080863	1.0064	0.00054222	538.7587055702083	22.935	0.31317	22.935	22.79	23.103	0	1287	130	0.8449601	0.07922262	0.8449601	342.77557	0	32.138275						499	14	3	NaN	NaN	NaN	0.081738	1	11779	11779		41.785	23.986	2	356880			14495	2468	8431	8600	11416	11416		286;287			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDMVM(Oxidation (M))_		LPAAGVGDM(0.007)VM(0.993)		LPAAGVGDM(-22)VM(22)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.511478707	1	1076.51148	1075.5042	2.2932	0.0024686	-1.127	-0.0012132	1.1662	0.0012554	1076.5114106804099	22.983	0.38548	22.983	22.887	23.272	0	147	178	1.5316714	0.104501605	1.5316714	310.6808	0	21.196869						1067	17	5	NaN	NaN	NaN	1.0591E-11	1	11780	11780		113.18	78.744	2	290470			14496	2468	8431	8600	11417	11417		286;287			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.999)VM(0.001)		LPAAGVGDM(31)VM(-31)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7593775868	2	538.759378	1075.5042	1.9346	0.0010423	-1.1657	-0.00062803	0.76895	0.00041428	538.7592371136418	22.958	0.28915	22.945	22.824	23.113	-0.01354	1287	115	0.8449601	0.07002962	0.84344065	342.77557	0	28.408936						1038	13	6	NaN	NaN	NaN	0.050017	1	11469	11469		49.833	27.707	2	424750			14497	2468	8431	8600	11418	11418		286;287			-0.03052969263058003
LPAAGVGDMVM	11	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM_		LPAAGVGDM(0.5)VM(0.5)		LPAAGVGDM(0)VM(0)	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.511478707	1	1076.51148	1075.5042	2.3047	0.0024811	-1.1018	-0.0011861	1.2029	0.0012949	1076.5112915527407	23.007	0.26511	22.993	22.896	23.162	-0.01354	144	175	1.533442	0.10271406	1.5319226	311.03995	0	20.83432						1045	12	5	NaN	NaN	NaN	1.0591E-11	1	11470	11470		113.18	79.758	2	290070			14498	2468	8431	8600	11419	11419		286;287			-0.03052969263058003
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(89)VM(89)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7568348978501	2	546.756835	1091.49912	2.0175	0.0011031	-1.5489	-0.00084688	0.46855	0.00025619	546.7565514874478	19.3	0.26401	19.3	19.204	19.468	0	1281	103	0.84864825	0.0626716	0.84864825	344.20795	0	25.419312						922	12	6	NaN	NaN	NaN	4.6276E-05	1	12452	12452		89.256	62.524	1	661770			14499	2468	8431	8601	11420	11420		286;287			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(110)VM(110)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5063933291	1	1092.50639	1091.49912	2.1984	0.0024018	0.1464	0.00015994	2.3448	0.0025618	1092.5068866989434	19.3	0.11999	19.3	19.252	19.372	0	123	112	1.5458313	0.065521	1.5458313	313.49472	0	13.287628						423	6	4	NaN	NaN	NaN	1.0591E-11	1	12453	12453		113.18	86.452	1	49288			14500	2468	8431	8601	11421	11421		286;287			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(110)VM(110)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7568348978501	2	546.756835	1091.49912	2.2039	0.001205	-1.965	-0.0010744	0.2389	0.00013062	546.7565548567338	19.298	0.21626	19.284	19.212	19.428	-0.014141	1281	97	0.84864825	0.05899781	0.8471288	344.20795	0	23.92923						949	10	6	NaN	NaN	NaN	3.2244E-11	1	12135	12135		106.56	79.826	1	648700			14501	2468	8431	8601	11422	11422		286;287			-0.04297273125666834
LPAAGVGDMVM	11	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_		LPAAGVGDM(1)VM(1)		LPAAGVGDM(100)VM(100)	0	0	2		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5063933291	1	1092.50639	1091.49912	1.5622	0.0017067	-0.35775	-0.00039084	1.2045	0.0013159	1092.5064493756404	19.298	0.12019	19.284	19.236	19.356	-0.014141	123	118	1.5458313	0.06906259	1.5443119	313.49475	0	14.00592						396	6	3	NaN	NaN	NaN	5.3654E-08	1	12136	12136		102.05	81.491	1	50029			14502	2468	8431	8601	11423	11423		286;287			-0.04297273125666834
LPAAHVMP	8	Unmodified	_LPAAHVMP_					0	0	0		CEP85L|p.T99A|1|0.21|ENSG00000111860|chr6:118566254-118566254|T/C|missense_variant	CEP85L|p.T99A|1|0.21|ENSG00000111860|chr6:118566254-118566254|T/C|missense_variant	CEP85L|p.T99A|1|0.21|ENSG00000111860|chr6:118566254-118566254|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.22837363215	2	418.228374	834.442194	1.4193	0.00059358	-4.0536	-0.0016953	-2.6343	-0.0011017	418.2261181228211	30.704	0.048262	30.704	30.68	30.728	0	1479	34	0.72651637	0.020429373	0.72651637	295.8006	0	8.31781						36	3	2	NaN	NaN	NaN	0.84876	1	5191	5191		0.39566	0	1	2039.6			14503	97	8432	8602	11424	11424					0.018350921707792622
LPAAIASCCSY	11	Unmodified	_LPAAIASCCSY_					0	0	0			REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7515525547001	2	549.751553	1097.48855	1.5002	0.00082475	-2.8231	-0.001552	-1.3229	-0.00072726	549.7507812680443	22.982	0.14465	22.969	22.896	23.041	-0.01354	1287	73	0.8449601	0.04425788	0.84344065	342.68872	0	17.949585						154	7	2	NaN	NaN	NaN	0.74155	1	12393	12393		4.7291	0.31598	1	16373	+		14504	11558	8433	8603	11425	11425					-0.056292557801043586
LPAAIASCCSY	11	Unmodified						0	0	0			REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.751553	1097.48855	1.6783	0.00092264	-1.9987	-0.0010988	-0.32045	-0.00017617	549.7499259773992	22.959	0.19271	22.959	22.863	23.055	0	1281	67	0.84864825	0.040574074	0.84864825	344.18454		16.455566	-0.0049323	0.00053364	0.0026038	NaN	4.7291	185	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18097	+		14505	11558	8433	8603							-0.056292557801043586
LPAAIASCCSY	11	Unmodified						0	0	0			REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	REV__ENST00000263563.6_1_10:72326756-72327032:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.751553	1097.48855	1.5002	0.00082475	-2.8231	-0.001552	-1.3229	-0.00072726	549.7507812680443	22.982	0.14465	22.969	22.896	23.041	-0.01354	1287	73	0.8449601	0.04425788	0.84344065	342.68872		17.949585	0.0049323	-0.00037276	-0.0026038	NaN	4.7291	154	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16373	+		14506	11558	8433	8603							-0.056292557801043586
LPAAMEGII	9	Unmodified	_LPAAMEGII_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5015659477002	1	914.501566	913.494289	1.2322	0.0011269	-6.7851	-0.006205	-5.5529	-0.0050781	914.4937364313033	30.197	0.14479	30.19	30.142	30.287	-0.0064106	330	91	1.4233059	0.053444624	1.4217864	289.34805	0	10.864929						269	7	3	NaN	NaN	NaN	0.20577	1	6176	6176		24.961	2.8347	1	42998			14507	4971	8434	8604	11426	11426					0.034082107938843365
LPAAMEGII	9	Unmodified						0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	914.501566	913.494289	1.9432	0.0017771	-5.4995	-0.0050293	-3.5562	-0.0032522	914.495766811315	30.198	0.16892	30.198	30.173	30.342	0	330	88	1.4233059	0.051665902	1.4233059	289.34805		10.503296	0.0037016	0.00042499	0.00075972	NaN	24.961	302	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45625			14508	4971	8434	8604							0.034082107938843365
LPAAPQEQW	9	Unmodified	_LPAAPQEQW_					0	0	0		nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.263998976	2	520.263999	1038.51345	1.2915	0.00067193	-10.578	-0.0055034	-9.2866	-0.0048315	520.7598812351201	36.035	0.096451	36.036	35.988	36.084	0.0011024	1287	49	0.8449601	0.029505253	0.84344065	342.92996	0	11.9747925						134	5	3	NaN	NaN	NaN	0.29681	1	9923	9923		19.118	1.3193	1	10966			14509	3863	8435	8605	11427	11427					-0.0042711659086762666
LPAASEPVI	9	Unmodified	_LPAASEPVI_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;RTN4|p.D1114Efs*4|1|0.15|ENSG00000115310|chr2:54982533-54982534|-/T|frameshift_variant	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5087598156	1	896.50876	895.501483	1.8878	0.0016924	0.3984	0.00035717	2.2862	0.0020496	896.5095836812038	23.586	0.12043	23.586	23.538	23.658	0	402	67	1.3804773	0.039301276	1.3804773	280.72498	0	7.992035						157	6	3	NaN	NaN	NaN	0.023074	1	5998	5998		68.108	41.377	1	14239			14510	2016	8436	8606	11428	11428					0.04955266665945146
LPAASEPVI	9	Unmodified	_LPAASEPVI_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;RTN4|p.D1114Efs*4|1|0.15|ENSG00000115310|chr2:54982533-54982534|-/T|frameshift_variant	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5087598156	1	896.50876	895.501483	1.8301	0.0016407	-0.56333	-0.00050503	1.2668	0.0011357	896.5082624894723	23.609	0.096478	23.596	23.548	23.645	-0.013048	402	61	1.3804773	0.035728455	1.3789579	280.72498	0	7.265503						139	5	3	NaN	NaN	NaN	0.024986	1	5880	5880		65.672	26.754	1	11636			14511	2016	8436	8606	11429	11429					0.04955266665945146
LPAAVAGL	8	Unmodified	_LPAAVAGL_					0	0	0		ENST00000526749.1_1_8:145735004-145735891:+|nuORF;ENST00000528047.5_1_8:145734716-145735997:+|nuORF;ENSG00000167700|ENST00000301327|MFSD3	ENST00000526749.1_1_8:145735004-145735891:+|nuORF	ENST00000526749.1_1_8:145735004-145735891:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.4399519689001	1	711.439952	710.432676	1.0856	0.00077231	-4.4499	-0.0031659	-3.3644	-0.0023935	711.4374099622611	27.495	0.16894	27.495	27.471	27.639	0	597	55	1.2639319	0.032386184	1.2639319	258.036	0	6.61174						210	8	3	NaN	NaN	NaN	0.83849	1	3442	3442		4.0537	0	1	24785			14512	4562	8437	8607	11430	11430					0.06587647156902676
LPAAVAGL	8	Unmodified						0	0	0		ENST00000526749.1_1_8:145735004-145735891:+|nuORF;ENST00000528047.5_1_8:145734716-145735997:+|nuORF;ENSG00000167700|ENST00000301327|MFSD3	ENST00000526749.1_1_8:145735004-145735891:+|nuORF	ENST00000526749.1_1_8:145735004-145735891:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.439952	710.432676	0.83853	0.00059657	-6.4641	-0.0045988	-5.6256	-0.0040023	711.435284232703	27.518	0.19306	27.508	27.46	27.653	-0.009552	597	55	1.2639319	0.032386184	1.2624124	258.03604		6.6117706	0.0068899	-0.00075953	-0.00075972	NaN	4.0537	217	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25756			14513	4562	8437	8607							0.06587647156902676
LPAAVLIIL	9	Unmodified	_LPAAVLIIL_					0	0	0		ENSG00000198899|ENST00000361899|MT-ATP6	ENSG00000198899|ENST00000361899|MT-ATP6	ENSG00000198899|ENST00000361899|MT-ATP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.6335663987003	1	922.633566	921.62629	1.6235	0.0014979	-0.22953	-0.00021177	1.394	0.0012861	922.6328746440593	37.528	0.072292	37.53	37.506	37.579	0.0028229	303	58	1.4393384	0.033821344	1.437819	292.569	0	6.874756						64	4	2	NaN	NaN	NaN	0.16059	1	6322	6322		27.861	6.9082	1	3330.9			14514	5833	8438	8608	11431	11431					0.16234183873143593
LPADDYTSL	9	Unmodified	_LPADDYTSL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.4727682398001	1	994.472768	993.465492	2.5067	0.0024929	-0.76269	-0.00075848	1.744	0.0017344	994.4715846412179	23.296	0.36175	23.296	23.176	23.538	0	249	103	1.4713576	0.060454845	1.4713576	298.7589	0	12.27536						562	16	4	NaN	NaN	NaN	0.028349	1	8332	8332		61.271	36.31	1	97128			14515	1414	8439	8609	11432	11432					-0.03150235301563953
LPADDYTSL	9	Unmodified	_LPADDYTSL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.4727682398001	1	994.472768	993.465492	2.156	0.0021441	-0.14532	-0.00014451	2.0107	0.0019996	994.4722891902621	23.32	0.31373	23.307	23.186	23.5	-0.013296	249	112	1.4713576	0.06578565	1.4698381	298.7589	0	13.357788						561	14	4	NaN	NaN	NaN	0.0040938	1	8167	8167		104.71	65.252	1	91172			14516	1414	8439	8609	11433	11433					-0.03150235301563953
LPAEDEVLL	9	Unmodified	_LPAEDEVLL_					0	0	0		ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF;ENSG00000092020|ENST00000261475|PPP2R3C	ENST00000556254.1_1_14:35579616-35591165:-|nuORF	ENST00000556254.1_1_14:35579616-35591165:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5404538745	1	998.540454	997.533177	1.2913	0.0012894	-0.52726	-0.00052649	0.76407	0.00076295	998.5401897296357	27.88	0.072466	27.87	27.822	27.895	-0.009552	213	79	1.4926696	0.046161532	1.4911501	303.06943	0	9.372589						171	4	2	NaN	NaN	NaN	0.20577	1	8307	8307		24.961	10.919	1	37631			14517	1085	8440	8610	11434	11434					0.034312146292336365
LPAEEANGSL	10	Unmodified	_LPAEEANGSL_					0	0	0		ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4945663144	1	1000.49457	999.48729	1.993	0.001994	-1.991	-0.001992	0.0019763	1.9773E-06	1000.4924777463222	19.108	0.1439	19.108	19.06	19.204	0	318	94	1.4304334	0.0551939	1.4304334	290.42532	0	11.206177						276	7	3	NaN	NaN	NaN	0.011513	1	8564	8564		69.32	40.424	1	29913			14518	3326	8441	8611	11435	11435					-0.012474305529963203
LPAEEANGSL	10	Unmodified	_LPAEEANGSL_					0	0	0		ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4945663144	1	1000.49457	999.48729	1.73	0.0017308	-0.97773	-0.00097821	0.75225	0.00075262	1000.4930898450872	19.13	0.14427	19.116	19.068	19.212	-0.014141	318	82	1.4304334	0.048087478	1.428914	290.42532	0	9.763336						262	7	3	NaN	NaN	NaN	1.0378E-05	1	8379	8379		117.26	69.26	1	28483			14519	3326	8441	8611	11436	11436					-0.012474305529963203
LPAEEAPAL	9	Unmodified	_LPAEEAPAL_					0	0	0		ENST00000493307.1_1_7:150020415-150021458:+|nuORF;ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.4880243735	1	910.488024	909.480748	1.9719	0.0017954	-0.78066	-0.00071078	1.1912	0.0010846	910.4871730814996	22.573	0.096458	22.573	22.525	22.621	0	381	76	1.3929803	0.044620156	1.3929803	283.2016	0	9.071564						160	5	2	NaN	NaN	NaN	0.04947	1	6221	6221		47.136	18.469	1	16166			14520	6486	8442	8612	11437	11437					0.02238676286287955
LPAEEAPAL	9	Unmodified	_LPAEEAPAL_					0	0	0		ENST00000493307.1_1_7:150020415-150021458:+|nuORF;ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	ENST00000493307.1_1_7:150020415-150021458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.4880243735	1	910.488024	909.480748	1.6887	0.0015375	-0.4578	-0.00041682	1.2309	0.0011207	910.4878067913809	22.573	0.1206	22.559	22.535	22.655	-0.01354	381	73	1.3929803	0.04283309	1.3914609	283.2016	0	8.708221						203	6	4	NaN	NaN	NaN	0.056143	1	6104	6104		44.302	23.747	1	15088			14521	6486	8442	8612	11438	11438					0.02238676286287955
LPAEEDSVL	9	Unmodified	_LPAEEDSVL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.488418304	1	972.488418	971.481142	2.2193	0.0021582	-0.65145	-0.00063352	1.5678	0.0015247	972.4873796696543	22.983	0.21675	22.983	22.863	23.079	0	306	67	1.4375578	0.039176106	1.4375578	291.98627	0	7.957184						277	10	3	NaN	NaN	NaN	0.043119	1	7648	7648		49.833	25.982	1	27616			14522	553	8443	8613	11439	11439					-0.005739487845289659
LPAEEDSVL	9	Unmodified	_LPAEEDSVL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.488418304	1	972.488418	971.481142	1.5969	0.001553	-0.10151	-9.8716E-05	1.4954	0.0014543	972.4879097225454	22.982	0.16864	22.969	22.921	23.089	-0.01354	306	49	1.4375578	0.028488636	1.4360384	291.98627	0	5.7864075						187	8	2	NaN	NaN	NaN	0.10956	1	7503	7503		34.439	9.4778	1	23709			14523	553	8443	8613	11440	11440					-0.005739487845289659
LPAEPLLA	8	Unmodified	_LPAEPLLA_					0	0	0		ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	ENSG00000186790|ENST00000335071|FOXE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4923814699	1	823.492381	822.485105	1.2191	0.0010039	-0.094674	-7.7963E-05	1.1245	0.00092599	823.4923625921796	28.025	0.14481	28.016	27.992	28.137	-0.0089779	477	88	1.3357477	0.05195284	1.3342283	271.99368	0	10.578949						253	7	4	NaN	NaN	NaN	0.078841	1	4939	4939		69.745	6.4344	1	62146			14524	5486	8444	8614	11441	11441					0.06676185499850362
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant;ENSG00000120708|ENST00000442011|TGFBI	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5298891882002	1	956.529889	955.522613	1.6057	0.0015359	-1.281	-0.0012253	0.32479	0.00031067	956.5290602814271	28.943	0.21723	28.943	28.894	29.112	0	267	118	1.4606913	0.06940794	1.4606913	296.75427	0	14.100952						484	10	4	NaN	NaN	NaN	0.0040938	1	7229	7229		104.71	40.161	1	124540			14525	2270	8445	8615	11442	11442					0.04307231974826209
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant;ENSG00000120708|ENST00000442011|TGFBI	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TGFBI|p.P373Rfs*8|1|0.26|ENSG00000120708|chr5:136053111-136053112|CA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.5293	0.0014628	-0.57264	-0.00054775	0.95666	0.00091508	956.5298542927251	28.966	0.16894	28.958	28.91	29.079	-0.0077229	267	127	1.4606913	0.074766874	1.4591719	296.75427	0	15.189667						465	8	4	NaN	NaN	NaN	1.2958E-07	1	7090	7090		136.74	49.719	1	124740			14526	2270	8445	8615	11443	11443					0.04307231974826209
LPAGDALL	8	Unmodified	_LPAGDALL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.4454312773001	1	769.445431	768.438155	2.1311	0.0016397	-0.86333	-0.00066428	1.2677	0.00097545	769.4443594813067	25.539	0.12065	25.528	25.479	25.6	-0.0116	531	67	1.3034686	0.039477587	1.3019491	265.7273	0	8.048004						146	6	2	NaN	NaN	NaN	0.62311	1	4264	4264		23.85	6.0701	1	13532			14527	4557	8446	8616	11444	11444					0.0446732594872401
LPAGDALLQM	10	Unmodified	_LPAGDALLQM_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7758849307501	2	514.775885	1027.53722	1.9647	0.0010114	-9.2191	-0.0047458	-7.2544	-0.0037344	514.7711846658165	28.701	0.096525	28.701	28.653	28.75	0	1305	91	0.83389086	0.05531639	0.83389086	338.48477	0	22.45346						356	5	3	NaN	NaN	NaN	0.17937	1	9672	9672		37.302	12.74	1	53547			14528	4557	8447	8617	11445	11445					0.024549808513029348
LPAGDALLQM	10	Unmodified	_LPAGDALLQM_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5444933949	1	1028.54449	1027.53722	1.7972	0.0018485	-2.6681	-0.0027443	-0.87093	-0.00089579	1028.5403981203478	28.701	0.16889	28.701	28.653	28.822	0	159	70	1.5245869	0.04074657	1.5245869	309.42664	0	8.269806						197	8	2	NaN	NaN	NaN	0.12649	1	9674	9674		42.318	8.8923	1	23065			14529	4557	8447	8617	11446	11446					0.024549808513029348
LPAGDALLQM	10	Unmodified	_LPAGDALLQM_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7758849307501	2	514.775885	1027.53722	1.0259	0.00052812	-9.7405	-0.0050142	-8.7145	-0.004486	514.7705987655621	28.701	0.19301	28.692	28.572	28.765	-0.0083504	1305	94	0.83389086	0.05715722	0.8323714	338.48477	0	23.200653						446	9	4	NaN	NaN	NaN	0.33935	1	9483	9483		26.115	2.9974	1	56798			14530	4557	8447	8617	11447	11447					0.024549808513029348
LPAGDALLQM	10	Unmodified	_LPAGDALLQM_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5444933949	1	1028.54449	1027.53722	1.1319	0.0011643	0.25936	0.00026677	1.3913	0.001431	1028.5443546838835	28.676	0.12065	28.668	28.644	28.765	-0.0083504	156	73	1.5263584	0.042511344	1.5248389	309.78613	0	8.627991						273	6	4	NaN	NaN	NaN	0.41164	1	9486	9486		23.118	1.3465	1	22214			14531	4557	8447	8617	11448	11448					0.024549808513029348
LPAGDALLQM	10	Oxidation (M)	_LPAGDALLQM(Oxidation (M))_		LPAGDALLQM(1)		LPAGDALLQM(80)	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.539408017	1	1044.53941	1043.53213	1.7622	0.0018407	-0.20754	-0.00021679	1.5547	0.0016239	1044.5398847799552	23.899	0.096441	23.899	23.851	23.947	0	171	79	1.5174994	0.046102762	1.5174994	307.92563	0	9.355011						164	5	3	NaN	NaN	NaN	0.0036584	1	10356	10356		80.442	34.615	1	14023			14532	4557	8447	8618	11449	11449		484			0.012106769886713664
LPAGDALLQM	10	Oxidation (M)	_LPAGDALLQM(Oxidation (M))_		LPAGDALLQM(1)		LPAGDALLQM(55)	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7733422418	2	522.773342	1043.53213	1.6633	0.00086955	-1.417	-0.00074079	0.24629	0.00012875	522.7728397813821	23.899	0.31353	23.886	23.813	24.127	-0.01305	1287	79	0.8449601	0.047946036	0.84344065	342.90836	0	19.457855						446	14	4	NaN	NaN	NaN	0.040041	1	10150	10150		55.413	25.378	1	82936			14533	4557	8447	8618	11450	11450		484			0.012106769886713664
LPAGDALLQM	10	Oxidation (M)	_LPAGDALLQM(Oxidation (M))_		LPAGDALLQM(1)		LPAGDALLQM(64)	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.539408017	1	1044.53941	1043.53213	1.6852	0.0017603	-0.72936	-0.00076185	0.95584	0.00099841	1044.539374380007	23.923	0.12058	23.91	23.837	23.958	-0.013048	168	94	1.5192716	0.054977417	1.5177522	308.28525	0	11.155823						176	6	3	NaN	NaN	NaN	0.019815	1	10151	10151		63.765	10.625	1	12873			14534	4557	8447	8618	11451	11451		484			0.012106769886713664
LPAGDALYL	9	Unmodified	_LPAGDALYL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5087598156	1	932.50876	931.501483	1.1856	0.0011056	-0.024893	-2.3213E-05	1.1607	0.0010824	932.5085566477946	27.88	0.21724	27.87	27.774	27.991	-0.009552	297	82	1.4428991	0.048077226	1.4413797	293.247	0	9.770935						400	10	4	NaN	NaN	NaN	0.030391	1	6499	6499		58.599	19.681	1	63956			14535	2090	8448	8619	11452	11452					0.032992666659424685
LPAGIQDKL	9	Unmodified	_LPAGIQDKL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.78456724259996	2	477.784567	953.554582	1.9055	0.00091042	-0.99417	-0.000475	0.91133	0.00043542	477.7850113794343	20.381	0.048252	20.367	20.367	20.415	-0.014141	1296	34	0.8394264	0.02029252	0.83790696	341.08087	0	8.245392						44	3	2	NaN	NaN	NaN	0.25548	1	7033	7033		21.771	2.6075	1	3489.2			14536	4767	8449	8620	11453	11453					0.07594644448602139
LPAGIVAVL	9	Unmodified	_LPAGIVAVL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.5553160777	1	852.555316	851.54804	1.5155	0.001292	1.3409	0.0011432	2.8563	0.0024352	852.5570420026257	31.404	0.31376	31.404	31.332	31.646	0	411	229	1.3751161	0.13615978	1.3751161	279.85306	0	27.710175						897	14	4	NaN	NaN	NaN	0.015198	1	5412	5412		78.076	12.4	1	636700			14537	2346	8450	8621	11454	11454					0.11632751287891097
LPAGIVAVL	9	Unmodified	_LPAGIVAVL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.5553160777	1	852.555316	851.54804	1.3411	0.0011434	0.85682	0.00073049	2.1979	0.0018739	852.5564973863289	31.379	0.36196	31.374	31.326	31.688	-0.0050716	411	196	1.3751161	0.11637163	1.3735967	279.85306	0	23.683075						946	16	5	NaN	NaN	NaN	0.015198	1	5279	5279		78.076	23.497	1	681630			14538	2346	8450	8621	11455	11455					0.11632751287891097
LPALDEVL	8	Unmodified	_LPALDEVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	869.4978607783002	1	869.497861	868.490584	1.0925	0.00094995	2.5775	0.0022411	3.67	0.0031911	869.4997841057839	30.414	0.096546	30.407	30.383	30.48	-0.0064106	390	64	1.3876231	0.03750491	1.3861036	282.31085	0	7.630371						90	5	2	NaN	NaN	NaN	0.62311	1	5507	5507		23.85	6.0701	1	6062.6			14539	1694	8451	8622	11456	11456					0.05107864291676378
LPALEIVM	8	Unmodified	_LPALEIVM_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.5114023525001	1	885.511402	884.504126	1.632	0.0014452	-0.45171	-0.00039999	1.1803	0.0010452	885.5113268423262	32.128	0.19304	32.128	32.08	32.273	0	363	133	1.4036897	0.078460574	1.4036897	285.499	0	15.958252						541	9	4	NaN	NaN	NaN	0.085787	1	5868	5868		67.621	14.298	1	94495			14540	6186	8452	8623	11457	11457					0.05725398799256709
LPALEIVM	8	Unmodified	_LPALEIVM_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.5114023525001	1	885.511402	884.504126	1.0904	0.00096559	-0.92274	-0.0008171	0.16769	0.00014849	885.5110715114657	32.127	0.12066	32.123	32.075	32.196	-0.0037575	363	160	1.4036897	0.09455466	1.4021703	285.499	0	19.231659						497	6	3	NaN	NaN	NaN	0.078841	1	5748	5748		69.745	10.299	1	93719			14541	6186	8452	8623	11458	11458					0.05725398799256709
LPALEIVM	8	Oxidation (M)	_LPALEIVM(Oxidation (M))_		LPALEIVM(1)		LPALEIVM(56)	0	0	1		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.5063169746002	1	901.506317	900.499041	1.9002	0.001713	-1.3402	-0.0012082	0.55998	0.00050483	901.5056518438901	27.688	0.24126	27.688	27.591	27.833	0	363	118	1.4036897	0.06957793	1.4036897	285.42133	0	14.147736						509	11	4	NaN	NaN	NaN	0.14214	1	6096	6096		55.947	14.487	1	104270			14542	6186	8452	8624	11459	11459		627			0.04481094936647878
LPALEIVM	8	Oxidation (M)	_LPALEIVM(Oxidation (M))_		LPALEIVM(1)		LPALEIVM(81)	0	0	1		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.5063169746002	1	901.506317	900.499041	1.56	0.0014063	-1.7148	-0.0015459	-0.1548	-0.00013955	901.5051883645588	27.687	0.19302	27.677	27.605	27.798	-0.009552	360	109	1.405474	0.064222336	1.4039545	285.78412	0	13.058746						486	9	5	NaN	NaN	NaN	0.044274	1	5978	5978		81.001	36.754	1	105120			14543	6186	8452	8624	11460	11460		627			0.04481094936647878
LPALEVIL	8	Unmodified	_LPALEVIL_					0	0	0		nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000100796|Q6IN85-5|PPP4R3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.5549817267	1	867.554982	866.547705	0.90218	0.00078269	0.37089	0.00032177	1.2731	0.0011045	867.5554754174238	33.889	0.19302	33.887	33.839	34.032	-0.0012474	324	151	1.42687	0.08920729	1.4253505	290.30576	0	18.14978						634	9	4	NaN	NaN	NaN	0.064024	1	5482	5482		74.274	10.964	1	133190			14544	1275	8453	8625	11461	11461					0.10909331568029756
LPALEVLDL	9	Unmodified	_LPALEVLDL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5819247587	1	982.581925	981.574648	2.2923	0.0022524	-0.89927	-0.00088361	1.393	0.0013687	982.5813381772102	34.638	0.2412	34.638	34.565	34.806	0	195	157	1.5033154	0.092323184	1.5033154	305.29858	0	18.749329						550	11	2	NaN	NaN	NaN	0.0023856	1	7951	7951		109.86	45.308	1	302450			14545	3641	8454	8626	11462	11462					0.08312395388554705
LPALEVLDL	9	Unmodified	_LPALEVLDL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;nc|ENSG00000148484|Q15404-2|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5819247587	1	982.581925	981.574648	1.9967	0.0019619	-0.32244	-0.00031683	1.6743	0.0016451	982.5815956286546	34.612	0.19282	34.612	34.563	34.756	-0.00064468	192	145	1.5050892	0.08519423	1.5035697	305.65878	0	17.301544						514	9	2	NaN	NaN	NaN	3.2142E-07	1	7780	7780		129.63	55.296	1	294920			14546	3641	8454	8626	11463	11463					0.08312395388554705
LPALITAVL	9	Unmodified	_LPALITAVL_					0	0	0		nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.5971808924002	1	910.597181	909.589904	1.1902	0.0010838	-0.24929	-0.000227	0.94095	0.00085682	910.5969137595588	34.999	0.12053	34.999	34.927	35.048	0	285	49	1.4500183	0.028470516	1.4500183	294.79724	0	5.788208						125	6	2	NaN	NaN	NaN	0.042649	1	6225	6225		50.033	2.9924	1	11356			14547	6004	8455	8627	11464	11464					0.13149306976424668
LPALITAVL	9	Unmodified	_LPALITAVL_					0	0	0		nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.5971808924002	1	910.597181	909.589904	1.5758	0.001435	-0.13727	-0.000125	1.4386	0.00131	910.5962204409411	34.998	0.14473	34.998	34.901	35.046	-4.5776E-05	282	46	1.4517976	0.026689649	1.4502782	295.159	0	5.426178						143	7	2	NaN	NaN	NaN	0.14945	1	6108	6108		28.667	1.935	1	12864			14548	6004	8455	8627	11465	11465					0.13149306976424668
LPALLSILVC	10	Unmodified	_LPALLSILVC_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.6376654986	1	1041.63767	1040.63039	1.6905	0.0017609	-7.1464	-0.007444	-5.4559	-0.0056831	1041.6305653765303	53.554	0.047909	53.554	53.53	53.578	0	183	40	1.510409	0.023050189	1.510409	306.49805	0	4.677429						69	3	2	NaN	NaN	NaN	0.75966	1	10254	10254		3.9685	0	1	7192.9	+		14549	9469	8456	8628	11466	11466					0.11169905304541317
LPALPLAEL	9	Unmodified	_LPALPLAEL_					0	0	0		nc|ENSG00000094880|Q9UJX2-2|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5764454503	1	936.576445	935.569169	0.795	0.00074458	0.81676	0.00076496	1.6118	0.0015095	936.5771377336664	33.673	0.072407	33.673	33.648	33.721	0	270	52	1.458913	0.03023231	1.458913	296.4828	0	6.1438293						102	4	2	NaN	NaN	NaN	0.049695	1	6745	6745		47.04	11.004	1	9567.1			14550	1112	8457	8629	11467	11467					0.09880716596740058
LPALPLAEL	9	Unmodified	_LPALPLAEL_					0	0	0		nc|ENSG00000094880|Q9UJX2-2|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5764454503	1	936.576445	935.569169	1.1648	0.001091	-1.449	-0.0013571	-0.28418	-0.00026616	936.5743360875404	33.671	0.072372	33.67	33.645	33.718	-0.0018463	267	52	1.4606913	0.030225873	1.4591719	296.84418	0	6.1425476						80	4	2	NaN	NaN	NaN	0.042649	1	6605	6605		50.033	20.434	1	8542.9			14551	1112	8457	8629	11468	11468					0.09880716596740058
LPALVDAGTAL	11	Unmodified	_LPALVDAGTAL_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477454.1_1_7:4827252-4828627:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5986374553997	1	1040.59864	1039.59136	1.4845	0.0015447	0.31099	0.00032362	1.7955	0.0018683	1040.5999435104038	28.75	0.096523	28.75	28.725	28.822	0	165	70	1.5210435	0.040768147	1.5210435	308.66006	0	8.272919						153	5	3	NaN	NaN	NaN	0.0034125	1	10210	10210		75.698	44.023	1	18358			14552	7290	8458	8630	11469	11469					0.07314896274488092
LPALVDAGTAL	11	Unmodified	_LPALVDAGTAL_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477454.1_1_7:4827252-4828627:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5986374553997	1	1040.59864	1039.59136	1.0968	0.0011413	1.6032	0.0016683	2.7	0.0028096	1040.5999020731786	28.749	0.07239	28.74	28.716	28.789	-0.0083504	162	73	1.5228153	0.042533755	1.5212959	309.0196	0	8.631226						148	4	3	NaN	NaN	NaN	0.022259	1	9991	9991		60.982	37.864	1	20137			14553	7290	8458	8630	11470	11470					0.07314896274488092
LPALVVALGE	10	Unmodified	_LPALVVALGE_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.30259282025	2	491.302593	980.590633	0.59387	0.00029177	1.0198	0.00050105	1.6137	0.00079282	491.3030882138168	20.766	0.16855	20.752	20.68	20.849	-0.014086	1320	58	0.824661	0.03507352	0.8231416	334.94995	0	14.245697						216	8	4	NaN	NaN	NaN	0.26902	1	7739	7739		29.598	0	1	37438	+		14554	10820	8459	8631	11471	11471					0.09956101625471092
LPAMKKGR	8	Unmodified	_LPAMKKGR_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5447681664002	1	900.544768	899.537492	1.8207	0.0016396	1.994	0.0017957	3.8146	0.0034353	900.5499896851828	56.78	0.072128	56.78	56.756	56.828	0	183	67	1.510409	0.039010048	1.510409	307.12616	0	7.9322815						205	4	4	NaN	NaN	NaN	0.8439	1	6077	6077		3.1533	0	1	14621	+		14555	10569	8460	8632	11472	11472					0.08370445361833845
LPAMNKGA	8	Unmodified	_LPAMNKGA_					0	0	0			REV__ENSG00000205269|ENST00000379426|TMEM170B	REV__ENSG00000205269|ENST00000379426|TMEM170B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.2180059111	2	401.218006	800.421459	1.4095	0.00056552	0.48192	0.00019336	1.8914	0.00075888	401.2183631101333	53.674	0.27413	53.674	53.626	53.9	0	1356	46	0.8024889	0.027734637	0.8024889	326.95712	0	11.299896						243	11	3	NaN	NaN	NaN	0.84692	1	4754	4754		1.4396	0.19772	1	61287	+		14556	11260	8461	8633	11473	11473					0.013265017911180621
LPAPFEESL	9	Unmodified	_LPAPFEESL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.514239124	1	1002.51424	1001.50696	2.2675	0.0022732	-0.83048	-0.00083257	1.437	0.0014406	1002.513660672955	28.339	0.26544	28.339	28.243	28.508	0	240	172	1.4766881	0.10117364	1.4766881	299.80835	0	20.541046						802	12	4	NaN	NaN	NaN	0.014046	1	8650	8650		80.639	30.606	1	225510			14557	4878	8462	8634	11474	11474					0.006269454577591205
LPAPFEESL	9	Unmodified	_LPAPFEESL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant;nc|ENSG00000173193|Q460N5-3|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.514239124	1	1002.51424	1001.50696	1.7091	0.0017134	-0.25972	-0.00026037	1.4494	0.001453	1002.5137703854263	28.339	0.26542	28.33	28.257	28.523	-0.0089779	237	190	1.4784646	0.11182356	1.4769452	300.169	0	22.703247						1018	12	4	NaN	NaN	NaN	0.043119	1	8478	8478		49.833	20.235	1	244500			14558	4878	8462	8634	11475	11475					0.006269454577591205
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.30259282025	2	491.302593	980.590633	1.4909	0.00073249	-1.3695	-0.00067285	0.12139	5.9641E-05	491.301952592456	20.742	0.14462	20.742	20.67	20.814	0	1323	58	0.8228144	0.03507352	0.8228144	334.19995	0	14.245697						211	7	3	NaN	NaN	NaN	0.1507	1	7909	7909		28.495	6.7242	1	40721			14559	8030	8463	8635	11476	11476					0.09956101625471092
LPAPKGPAL	9	Unmodified	_LPAPKGPAL_					0	0	0		PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant;ENSG00000143294|ENST00000271526|PRCC	PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2710957266	2	432.271096	862.527639	1.5934	0.00068878	-2.4951	-0.0010785	-0.90166	-0.00038976	432.26993390095635	18.674	0.095982	18.66	18.588	18.684	-0.014059	1377	55	0.7895419	0.03330499	0.78802246	321.29214	0	13.552948						103	5	2	NaN	NaN	NaN	0.074859	1	5433	5433		39.459	17.332	1	9564.7			14560	3409	8464	8636	11477	11477					0.09087580628079195
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(53)	0	0	1		SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant;SS18|p.N242Kfs*12|1|0.36|ENSG00000141380|chr18:26039337-26039338|GA/-|frameshift_variant;nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.74458480235	2	492.744585	983.474617	1.2165	0.00059944	0.22725	0.00011197	1.4438	0.00071141	492.7444549443614	17.282	0.168	17.268	17.22	17.388	-0.013567	1347	55	0.8080346	0.033265352	0.8065152	328.18356	0	13.510712						244	8	3	NaN	NaN	NaN	0.03618	1	7827	7827		52.78	17.483	1	32092			14561	3315	8465	8637	11478	11478		367			-0.01778165216887828
LPAPQDEEW	9	Unmodified	_LPAPQDEEW_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;ENST00000555122.1_1_14:105421221-105423995:-|nuORF	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.4945663144	1	1084.49457	1083.48729	1.8798	0.0020386	-1.3923	-0.0015099	0.48745	0.00052863	1084.4930762189829	23.417	0.12062	23.417	23.369	23.489	0	183	73	1.510409	0.042565465	1.510409	306.3394	0	8.633057						220	6	3	NaN	NaN	NaN	0.13999	1	12110	12110		30.035	13.451	1	16821			14562	5421	8466	8638	11479	11479					-0.051114305530063575
LPAPQDEEW	9	Unmodified	_LPAPQDEEW_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant;ENST00000555122.1_1_14:105421221-105423995:-|nuORF	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.4945663144	1	1084.49457	1083.48729	1.9455	0.0021099	-0.78193	-0.00084799	1.1636	0.0012619	1084.493880970314	23.416	0.12072	23.403	23.379	23.5	-0.013294	183	73	1.510409	0.042565465	1.5088896	306.3394	0	8.633057						197	6	3	NaN	NaN	NaN	0.12104	1	11802	11802		32.778	4.9892	1	14627			14563	5421	8466	8638	11480	11480					-0.051114305530063575
LPAPSWNVL	9	Unmodified	_LPAPSWNVL_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5512933323001	1	996.551293	995.544017	1.2615	0.0012572	-0.088629	-8.8323E-05	1.1729	0.0011688	996.5513164926153	30.317	0.096483	30.311	30.287	30.383	-0.0064087	207	52	1.496219	0.030164957	1.4946996	303.79834	0	6.124817						142	5	4	NaN	NaN	NaN	0.10945	1	8256	8256		34.454	6.6652	1	13343			14564	1802	8467	8639	11481	11481					0.046066617941846744
LPAPSWNVL	9	Unmodified						0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.551293	995.544017	1.8821	0.0018756	0.24596	0.00024511	2.1281	0.0021208	996.5518396050223	30.342	0.1448	30.342	30.294	30.439	0	207	55	1.496219	0.03193772	1.496219	303.79834		6.484741	0.015767	0.00021001	0.00075972	NaN	34.454	133	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14558			14565	1802	8467	8639							0.046066617941846744
LPAREATQF	9	Unmodified	_LPAREATQF_					0	0	0		ENST00000476291.1_1_13:114550749-114566917:-|nuORF;GAS6|p.E209Gfs*15|1|0.46|ENSG00000183087|chr13:113835600-113835601|CC/-|frameshift_variant;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	ENST00000476291.1_1_13:114550749-114566917:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.77727352675	2	516.777274	1031.53999	1.6229	0.00083866	-1.6512	-0.0008533	-0.028344	-1.4648E-05	517.277157189702	16.658	0.14382	16.645	16.597	16.741	-0.013294	1299	40	0.8375814	0.02398467	0.83606195	339.9653	0	9.735107						152	7	3	NaN	NaN	NaN	0.14787	1	9641	9641		28.896	2.7806	1	17417			14566	5291	8468	8640	11482	11482					0.02548572300474916
LPASAASG	8	Unmodified	_LPASAASG_					0	0	0			REV__ENST00000296402.9_1_4:114682317-114683073:-|nuORF	REV__ENST00000296402.9_1_4:114682317-114683073:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3515308921001	1	673.351531	672.344254	0.78476	0.00052842	8.052	0.0054218	8.8368	0.0059503	673.3562262320395	27.687	0.24128	27.677	27.581	27.822	-0.009552	681	151	1.2134778	0.090357184	1.2119584	248.0009	0	18.466492						334	11	2	NaN	NaN	NaN	0.77489	1	2575	2575		12.588	0	1	39106	+		14567	11634	8469	8641	11483	11483					-0.005023931535674819
LPASAASG	8	Unmodified						0	0	0			REV__ENST00000296402.9_1_4:114682317-114683073:-|nuORF	REV__ENST00000296402.9_1_4:114682317-114683073:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	673.351531	672.344254	0.78476	0.00052842	8.052	0.0054218	8.8368	0.0059503	673.3562262320395	27.687	0.24128	27.677	27.581	27.822	-0.009552	681	151	1.2134778	0.090357184	1.2119584	248.0009		18.466492	0.0068838	-0.00019181	0.00014264	NaN	12.588	334	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39106	+		14568	11634	8469	8641							-0.005023931535674819
LPASGLDIF	9	Unmodified	_LPASGLDIF_					0	0	0		ENST00000585864.1_1_18:56807180-56819918:+|nuORF;ENSG00000166562|ENST00000587834|SEC11C;ENST00000593132.1_1_18:56807180-56814556:+|nuORF;ENST00000592774.1_1_18:56807180-56814270:+|nuORF	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5087598156001	1	932.50876	931.501483	1.1189	0.0010434	0.032694	3.0487E-05	1.1516	0.0010739	932.508691482248	31.018	0.16897	31.018	30.97	31.139	0	324	82	1.42687	0.048087478	1.42687	289.98932	0	9.77301						217	8	2	NaN	NaN	NaN	0.094712	1	6635	6635		36.586	10.472	1	26932			14569	4494	8470	8642	11484	11484					0.03299266665953837
LPASGLDIF	9	Unmodified	_LPASGLDIF_					0	0	0		ENST00000585864.1_1_18:56807180-56819918:+|nuORF;ENSG00000166562|ENST00000587834|SEC11C;ENST00000593132.1_1_18:56807180-56814556:+|nuORF;ENST00000592774.1_1_18:56807180-56814270:+|nuORF	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5087598156001	1	932.50876	931.501483	1.1874	0.0011073	-1.4344	-0.0013375	-0.24695	-0.00023029	932.5078133951782	31.017	0.12069	31.012	30.964	31.084	-0.0050716	312	85	1.433996	0.049871087	1.4324765	291.43756	0	10.135529						195	6	2	NaN	NaN	NaN	0.043119	1	6497	6497		49.833	23.718	1	23729			14570	4494	8470	8642	11485	11485					0.03299266665953837
LPASGQIAL	9	Unmodified	_LPASGQIAL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	869.5090941666	1	869.509094	868.501818	1.2562	0.0010922	-0.74334	-0.00064634	0.51282	0.0004459	869.5089939563859	24.164	0.14476	24.151	24.103	24.248	-0.012749	393	91	1.3858368	0.053598404	1.3843174	281.94742	0	10.904541						364	7	3	NaN	NaN	NaN	0.013696	1	5509	5509		81.699	29.075	1	56099			14571	5130	8471	8643	11486	11486					0.062306863857997996
LPASPIHKM	9	Unmodified	_LPASPIHKM_					0	0	0			REV__ENST00000466650.5_1_3:182788929-182817286:-|nuORF	REV__ENST00000466650.5_1_3:182788929-182817286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.28113748415007	2	497.281137	992.547722	1.6685	0.00082969	-4.5857	-0.0022804	-2.9172	-0.0014507	497.2793785758672	20.477	0.048117	20.477	20.453	20.501	0	1296	31	0.8394264	0.018450797	0.8394264	340.89038	0	7.492859						30	3	2	NaN	NaN	NaN	0.59509	1	8325	8325		5.6942	0	1	2429.7	+		14572	12306	8472	8644	11487	11487					0.05115008296399992
LPASPSVSL	9	Unmodified	_LPASPSVSL_					0	0	0		nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1	nc|ENSG00000171617|O14682-2|ENC1	nc|ENSG00000171617|O14682-2|ENC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4931097514001	1	870.49311	869.485833	1.5913	0.0013852	-0.28124	-0.00024482	1.31	0.0011404	870.4936943701831	23.899	0.096441	23.899	23.851	23.947	0	408	52	1.3769034	0.030383706	1.3769034	280.12494	0	6.1814575						117	5	3	NaN	NaN	NaN	0.032764	1	5658	5658		55.494	13.709	1	9968.5			14573	4799	8473	8645	11488	11488					0.0458698014890615
LPASPSVSL	9	Unmodified	_LPASPSVSL_					0	0	0		nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1	nc|ENSG00000171617|O14682-2|ENC1	nc|ENSG00000171617|O14682-2|ENC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.4931097514001	1	870.49311	869.485833	1.4603	0.0012712	-1.4897	-0.0012968	-0.029399	-2.5591E-05	870.4914969310133	23.923	0.072296	23.91	23.861	23.934	-0.013048	405	52	1.3786905	0.030383706	1.377171	280.48853	0	6.181427						106	4	3	NaN	NaN	NaN	0.025843	1	5519	5519		64.55	20.248	1	9096.4			14574	4799	8473	8645	11489	11489					0.0458698014890615
LPASSLLW	8	Unmodified	_LPASSLLW_					0	0	0		ENST00000524630.5_1_11:57520988-57558858:+|nuORF;ENST00000528395.1_1_11:57480275-57558858:+|nuORF;ENST00000529919.5_1_11:57520766-57558858:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.75527848690007	2	443.755278	885.496004	1.3753	0.00061028	1.1178	0.00049602	2.493	0.0011063	443.7556956724422	21.874	0.072332	21.874	21.85	21.922	0	1380	31	0.7876915	0.018504798	0.7876915	320.40894	0	7.527191						49	4	2	NaN	NaN	NaN	0.8439	1	5881	5881		3.1533	0	1	4057.1			14575	6586	8474	8646	11490	11490					0.048675878741505585
LPASSLLW	8	Unmodified						0	0	0		ENST00000524630.5_1_11:57520988-57558858:+|nuORF;ENST00000528395.1_1_11:57480275-57558858:+|nuORF;ENST00000529919.5_1_11:57520766-57558858:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	443.755278	885.496004	1.3905	0.00061706	2.1968	0.00097483	3.5873	0.0015919	443.7561139010355	21.874	0.096384	21.86	21.86	21.956	-0.013895	1380	49	0.7876915	0.029597998	0.78617203	320.40894		12.039581	-0.0070169	0.00065361	-0.00075972	NaN	3.1533	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5386.1			14576	6586	8474	8646							0.048675878741505585
LPATDEIL	8	Unmodified	_LPATDEIL_					0	0	0			REV__tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	REV__tr|U7SJK9|U7SJK9_FUSNUPhosphonatetransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02092PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.4771253362002	1	871.477125	870.469849	2.0934	0.0018243	-1.6935	-0.0014759	0.39984	0.00034845	871.4755043800074	26.167	0.096525	26.156	26.107	26.204	-0.011135	390	61	1.3876231	0.03573215	1.3861036	282.30084	0	7.2694397						75	5	2	NaN	NaN	NaN	0.80692	1	5530	5530		8.2903	0	1	4496.4	+		14577	13407	8475	8647	11491	11491					0.029432739120125007
LPATIGDLI	9	Unmodified	_LPATIGDLI_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5400599440001	1	912.54006	911.532783	1.3429	0.0012254	-0.26935	-0.0002458	1.0735	0.00097963	912.5396451145909	31.186	0.096527	31.181	31.157	31.253	-0.0050716	285	100	1.4500183	0.058742285	1.4484988	294.78787	0	11.942291						245	5	3	NaN	NaN	NaN	0.10956	1	6143	6143		34.439	7.7072	1	44608			14578	4409	8476	8648	11492	11492					0.07347839700048553
LPATLVRSQ	9	Unmodified	_LPATLVRSQ_					0	0	0			REV__ENST00000377351.8_1_X:47050260-47058480:+|nuORF	REV__ENST00000377351.8_1_X:47050260-47058480:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5836560932001	1	984.583656	983.57638	2.0211	0.00199	3.1296	0.0030814	5.1508	0.0050713	984.5866269511384	34.638	0.048233	34.638	34.589	34.638	0	195	103	1.5033154	0.060333133	1.5033154	305.28995	0	12.252319						163	3	2	NaN	NaN	NaN	0.33629	1	8018	8018		16.584	0	1	41309	+		14579	11943	8477	8649	11493	11493					0.08393449197183145
LPAVDEKL	8	Unmodified	_LPAVDEKL_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.75801814109997	2	442.758018	883.501483	1.2041	0.00053311	-1.4147	-0.00062638	-0.21065	-9.3266E-05	442.75757904070537	19.492	0.071968	19.492	19.468	19.54	0	1374	43	0.791392	0.025898278	0.791392	321.92532	0	10.535004						98	4	2	NaN	NaN	NaN	0.13059	1	5847	5847		58.235	21.649	1	12930			14580	6048	8478	8650	11494	11494					0.055072666659384595
LPAVDEKL	8	Unmodified	_LPAVDEKL_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.75801814109997	2	442.758018	883.501483	1.2245	0.00054216	-1.8667	-0.0008265	-0.6422	-0.00028434	442.7571682790994	19.515	0.0963	19.5	19.452	19.549	-0.014141	1371	46	0.79324204	0.027746618	0.7917226	322.67786	0	11.286896						102	5	3	NaN	NaN	NaN	0.51982	1	5726	5726		30.035	2.2466	1	14397			14581	6048	8478	8650	11495	11495					0.055072666659384595
LPAVDSEIL	9	Unmodified	_LPAVDSEIL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7;UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.2576	0.0012029	-1.4341	-0.0013717	-0.17652	-0.00016884	956.5294343014652	27.59	0.16891	27.581	27.533	27.702	-0.009552	297	76	1.4428991	0.044515967	1.4413797	293.1396	0	9.043884						191	8	3	NaN	NaN	NaN	0.043119	1	7088	7088		49.833	14.088	1	26008			14582	4279	8479	8651	11496	11496					0.04307231974826209
LPAVDSEIL	9	Unmodified						0	0	0		ENSG00000163960|ENST00000296328|UBXN7;UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	956.529889	955.522613	1.4006	0.0013397	-0.77838	-0.00074454	0.62218	0.00059513	956.5307487888243	27.567	0.12067	27.567	27.543	27.664	0	300	70	1.4411188	0.0409503	1.4411188	292.77792		8.319489	-0.0068858	0.00028846	-0.00013041	NaN	49.833	242	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27513			14583	4279	8479	8651							0.04307231974826209
LPAVFEEVL	9	Unmodified	_LPAVFEEVL_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5662746945001	1	1016.56627	1015.559	1.6541	0.0016815	-2.1879	-0.0022241	-0.53381	-0.00054265	1016.5656349766631	33.213	0.36189	33.21	33.042	33.403	-0.0024757	192	142	1.5050892	0.08335304	1.5035697	305.51712	0	16.91977						829	16	3	NaN	NaN	NaN	0.02781	1	9038	9038		61.977	30.416	1	242530			14584	425	8480	8652	11497	11497					0.05184108871515036
LPAWEERETIL	11	Unmodified	_LPAWEERETIL_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.8615344724001	2	678.861534	1355.70852	1.683	0.0011425	-2.4372	-0.0016545	-0.75423	-0.00051202	678.8599643443703	25.105	0.19302	25.105	25.033	25.226	0	1095	58	0.9625867	0.034790516	0.9625867	389.47086	0	14.076569						321	9	4	NaN	NaN	NaN	0.079445	1	19620	19620		52.995	33.831	1	57695			14585	4210	8481	8653	11498	11498					0.04489009423468815
LPAWEERETIL	11	Unmodified	_LPAWEERETIL_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.8615344724001	2	678.861534	1355.70852	1.5021	0.0010197	-2.5013	-0.001698	-0.99922	-0.00067833	678.8599355903252	25.129	0.28944	25.117	24.996	25.286	-0.012011	1095	52	0.9625867	0.031128407	0.96106726	389.47086	0	12.594818						374	13	4	NaN	NaN	NaN	0.11327	1	18729	18729		48.319	27.871	1	58838			14586	4210	8481	8653	11499	11499					0.04489009423468815
LPCEFCEELY	10	Unmodified	_LPCEFCEELY_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.2619500655001	2	623.26195	1244.50935	0.77805	0.00048493	-4.1615	-0.0025937	-3.3835	-0.0021088	623.2589116541562	34.492	0.16887	34.491	34.419	34.587	-0.0006485	1134	64	0.9387595	0.038535774	0.93724006	380.17252	0	15.605957						131	8	2	NaN	NaN	NaN	0.68669	1	16878	16878		8.962	1.9776	1	11484			14587	2923	8482	8654	11500	11500					-0.1031271019110136
LPCGAQGG	8	Unmodified	_LPCGAQGG_					0	0	0		ENST00000302472.3_1_5:40679821-40680163:+|nuORF	ENST00000302472.3_1_5:40679821-40680163:+|nuORF	ENST00000302472.3_1_5:40679821-40680163:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.3239359331002	1	702.323936	701.316659	0.85685	0.00060179	3.5521	0.0024947	4.4089	0.0030965	702.326999159582	34.998	0.14479	34.998	34.974	35.119	-4.5776E-05	666	76	1.2224985	0.04510367	1.2209791	249.6386	0	9.210327						147	7	2	NaN	NaN	NaN	0.84692	1	3182	3182		1.4396	1.0439	1	9729			14588	6414	8483	8655	11501	11501					-0.04594619685440193
LPCGAQGG	8	Unmodified						0	0	0		ENST00000302472.3_1_5:40679821-40680163:+|nuORF	ENST00000302472.3_1_5:40679821-40680163:+|nuORF	ENST00000302472.3_1_5:40679821-40680163:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	702.323936	701.316659	0.52092	0.00036585	8.0703	0.005668	8.5912	0.0060338	702.3293700594168	34.999	0.096485	34.999	34.975	35.072	0	663	46	1.2243022	0.027056336	1.2243022	250.00687		5.525009	0.00074486	0.0017052	0.0016615	NaN	1.4396	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4550.6			14589	6414	8483	8655							-0.04594619685440193
LPCPFSPVSSL	11	Unmodified	_LPCPFSPVSSL_					0	0	0		ENST00000473530.6_1_1:161559398-161565518:+|nuORF	ENST00000473530.6_1_1:161559398-161565518:+|nuORF	ENST00000473530.6_1_1:161559398-161565518:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7968173381001	2	573.796817	1145.57908	1.7459	0.0010018	5.266	0.0030216	7.0119	0.0040234	573.7994838201807	21.946	0.048153	21.946	21.946	21.994	0	1239	64	0.87444305	0.038648307	0.87444305	354.46136	0	15.666351						86	3	2	NaN	NaN	NaN	0.6085	1	14652	14652		13.463	7.2128	1	13836			14590	7168	8484	8656	11502	11502					0.012115365398358335
LPDADKERL	9	Unmodified	_LPDADKERL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.86098429756663	3	352.860984	1055.56112	1.6337	0.00057646	-2.1971	-0.00077528	-0.56342	-0.00019881	352.86088026558264	14.885	0.072065	14.885	14.861	14.933	0	1464	25	0.73579943	0.014848888	0.73579943	447.83987	0	9.037659						49	4	2	NaN	NaN	NaN	0.61852	1	10905	10905		2.7042	1.1786	1	3301.5			14591	786	8485	8657	11503	11503					0.035565376093245504
LPDAHSDYA	9	Unmodified	_LPDAHSDYA_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.72216395104994	2	494.722164	987.429775	1.5914	0.00078728	-0.93933	-0.00046471	0.65204	0.00032258	494.72181333121654	15.198	0.26429	15.198	15.15	15.414	0	1326	37	0.8209676	0.022162437	0.8209676	333.4179	0	9.000793						168	12	2	NaN	NaN	NaN	0.094712	1	8114	8114		36.586	14.46	1	20303			14592	6059	8486	8658	11504	11504					-0.06444272758574243
LPDAHSDYA	9	Unmodified	_LPDAHSDYA_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.72216395104994	2	494.722164	987.429775	0.92597	0.0004581	-0.34874	-0.00017253	0.57723	0.00028557	494.72168225667	15.172	0.16811	15.16	15.136	15.304	-0.012202	1326	43	0.8209676	0.025856256	0.81944823	333.4179	0	10.500946						176	8	3	NaN	NaN	NaN	0.16171	1	7952	7952		27.789	8.5041	1	21885			14593	6059	8486	8658	11505	11505					-0.06444272758574243
LPDAMSFEL	9	Oxidation (M)	_LPDAM(Oxidation (M))SFEL_		LPDAM(1)SFEL		LPDAM(45)SFEL	0	0	1		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4812244360999	1	1038.48122	1037.47395	1.6299	0.0016926	1.2798	0.0013291	2.9097	0.0030217	1038.4827576332063	27.808	0.19302	27.808	27.76	27.953	0	174	79	1.5157272	0.046097875	1.5157272	307.58942	0	9.354736						237	9	2	NaN	NaN	NaN	0.055351	1	10096	10096		44.638	10.94	1	22653			14594	5292	8487	8659	11506	11506		551			-0.04329004656597135
LPDARDPAF	9	Unmodified	_LPDARDPAF_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113975757-113976110:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.25617394389997	2	501.256174	1000.49779	1.3554	0.00067939	-2.1583	-0.0010819	-0.80292	-0.00040247	501.25525667239833	19.779	0.16843	19.765	19.669	19.837	-0.014141	1323	103	0.8228144	0.06277335	0.82129496	334.10797	0	25.48944						367	8	3	NaN	NaN	NaN	0.27507	1	8438	8438		20.513	1.2286	1	54850			14595	5442	8488	8660	11507	11507					-0.002434031079133092
LPDDDPTAV	9	Unmodified	_LPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4414681114	1	942.441468	941.434192	1.9727	0.0018592	-1.6399	-0.0015455	0.33281	0.00031366	942.4400798191392	19.924	0.096268	19.909	19.861	19.958	-0.014141	354	49	1.4090419	0.028543234	1.4075224	286.32202	0	5.8000793						97	5	2	NaN	NaN	NaN	0.04947	1	6702	6702		47.136	25.301	1	7296.9			14596	3997	8489	8661	11508	11508					-0.03886808335664682
LPDDFIDSL	9	Unmodified	_LPDDFIDSL_					0	0	0		ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5040683682	1	1034.50407	1033.49679	1.2103	0.001252	-0.092514	-9.5706E-05	1.1177	0.0011563	1034.5043554550869	31.718	0.1448	31.718	31.67	31.815	0	180	91	1.5121819	0.0532068	1.5121819	306.8855	0	10.797913						374	7	4	NaN	NaN	NaN	0.062072	1	9915	9915		41.785	5.198	1	84217			14597	2367	8490	8662	11509	11509					-0.0186166226746991
LPDDFIDSL	9	Unmodified	_LPDDFIDSL_					0	0	0		ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENSG00000123213|ENST00000380985|NLN;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENST00000506677.1_1_5:65076017-65081739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5040683682	1	1034.50407	1033.49679	0.68941	0.0007132	-0.53559	-0.00055407	0.15382	0.00015912	1034.504186262973	31.717	0.28962	31.712	31.616	31.906	-0.0044155	177	82	1.5139546	0.04786837	1.5124352	307.24524	0	9.714508						484	13	4	NaN	NaN	NaN	0.025843	1	9708	9708		64.55	41.216	1	91664			14598	2367	8490	8662	11510	11510					-0.0186166226746991
LPDDFPPIYVW	11	Unmodified	_LPDDFPPIYVW_					0	0	0			REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.3424462622501	2	681.342446	1360.67034	1.4845	0.0010115	6.1679	0.0042024	7.6524	0.0052139	681.3448522620035	25.033	0.28952	25.021	24.9	25.189	-0.012011	1056	64	0.9863805	0.03842783	0.9848611	399.0833	0	15.547668						248	13	3	NaN	NaN	NaN	0.57804	1	18788	18788		15.463	0.60868	1	25265	+		14599	9604	8491	8663	11511	11511					0.004431235088077301
LPDDFPPIYVW	11	Unmodified						0	0	0			REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	681.342446	1360.67034	1.6531	0.0011263	8.7458	0.0059589	10.399	0.0070853	681.3484603938745	24.985	0.19306	24.985	24.936	25.129	0	1053	49	0.9882094	0.02926737	0.9882094	399.82327		11.84137	-0.018012	0.0013181	0.0016742	NaN	15.463	186	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22912	+		14600	9604	8491	8663							0.004431235088077301
LPDDFPPIYVW	11	Unmodified						0	0	0			REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	681.342446	1360.67034	1.4845	0.0010115	6.1679	0.0042024	7.6524	0.0052139	681.3448522620035	25.033	0.28952	25.021	24.9	25.189	-0.012011	1056	64	0.9863805	0.03842783	0.9848611	399.0833		15.547668	0.018012	-0.0021949	-0.0016742	NaN	15.463	248	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25265	+		14601	9604	8491	8663							0.004431235088077301
LPDDGVEL	8	Unmodified	_LPDDGVEL_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4250897657001	1	857.42509	856.417813	1.8105	0.0015524	0.3055	0.00026194	2.116	0.0018143	857.4251888574811	24.188	0.31377	24.188	24.092	24.406	0	435	76	1.360811	0.04473436	1.360811	276.91678	0	9.10318						496	14	4	NaN	NaN	NaN	0.071487	1	5484	5484		71.993	30.533	1	103470			14602	4735	8492	8664	11512	11512					-0.01613889501743415
LPDDGVEL	8	Unmodified	_LPDDGVEL_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4250897657001	1	857.42509	856.417813	1.4148	0.0012131	0.05585	4.7887E-05	1.4706	0.001261	857.4249105376502	24.188	0.24132	24.175	24.103	24.344	-0.012749	435	94	1.360811	0.055488348	1.3592916	276.91678	0	11.291534						457	11	4	NaN	NaN	NaN	0.027417	1	5348	5348		96.245	34.269	1	96801			14603	4735	8492	8664	11513	11513					-0.01613889501743415
LPDDLAAFG	9	Unmodified	_LPDDLAAFG_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.73200035584995	2	459.732	917.449448	2.2784	0.0010474	1.1682	0.00053708	3.4466	0.0015845	459.7319021111713	19.539	0.024076	19.524	19.5	19.524	-0.014143	1377	28	0.7895419	0.01665157	0.78802246	320.9908	0	6.7697754						31	2	2	NaN	NaN	NaN	0.47587	1	6233	6233		10.605	2.3147	1	2066.6	+		14604	11029	8493	8665	11514	11514					-0.012578967478134473
LPDDLGQLTAL	11	Unmodified	_LPDDLGQLTAL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.316428477	2	578.316428	1154.6183	1.2431	0.00071888	-1.8821	-0.0010885	-0.63905	-0.00036957	578.3152719016128	30.897	0.2413	30.897	30.801	31.042	0	1197	64	0.9001988	0.038602352	0.9001988	364.86768	0	15.646271						299	11	4	NaN	NaN	NaN	0.26033	1	14979	14979		27.046	1.3651	1	64850			14605	3631	8494	8666	11515	11515					0.04717960095035778
LPDDLGQLTAL	11	Unmodified	_LPDDLGQLTAL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.316428477	2	578.316428	1154.6183	1.2106	0.0007001	-2.6074	-0.0015079	-1.3968	-0.00080781	578.3151849534823	30.896	0.16899	30.891	30.842	31.011	-0.0057545	1194	67	0.902037	0.04042965	0.9005176	365.61273	0	16.386932						306	8	4	NaN	NaN	NaN	0.081525	1	14484	14484		41.839	14.792	1	66538			14606	3631	8494	8666	11516	11516					0.04717960095035778
LPDDPAKTTM	10	Unmodified	_LPDDPAKTTM_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7682568639	2	544.768257	1087.52196	1.8376	0.0010011	-1.6116	-0.00087793	0.22605	0.00012315	544.768455299779	17.189	0.21596	17.189	17.093	17.309	0	1275	76	0.85233563	0.046079576	0.85233563	345.71927	0	18.690521						401	10	5	NaN	NaN	NaN	0.24053	1	12274	12274		37.743	15.908	1	81672			14607	2801	8495	8667	11517	11517					-0.018299307365623463
LPDDPAKTTM	10	Unmodified	_LPDDPAKTTM_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7682568639	2	544.768257	1087.52196	1.8395	0.0010021	-2.0888	-0.0011379	-0.24929	-0.00013581	544.7682227117019	17.186	0.28794	17.172	17.052	17.34	-0.013569	1275	97	0.85233563	0.059004188	0.8508162	345.71927	0	23.932922						472	13	4	NaN	NaN	NaN	0.25454	1	11965	11965		42.061	25.203	1	86871			14608	2801	8495	8667	11518	11518					-0.018299307365623463
LPDDPAKTTM	10	Oxidation (M)	_LPDDPAKTTM(Oxidation (M))_		LPDDPAKTTM(1)		LPDDPAKTTM(47)	0	0	1		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000521093.1_1_5:150113023-150133188:-|nuORF;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.76571417495	2	552.765714	1103.51688	1.2418	0.00068642	-0.70931	-0.00039208	0.53249	0.00029434	552.765422256378	14.645	0.28805	14.645	14.549	14.837	0	1281	76	0.84864825	0.046114445	0.84864825	344.1612	0	18.701294						414	13	3	NaN	NaN	NaN	0.089401	1	12976	12976		47.424	9.2934	1	113670			14609	2801	8495	8668	11519	11519		325			-0.030742345991939146
LPDDPEVL	8	Unmodified	_LPDDPEVL_					0	0	0		ENSG00000176641|ENST00000312828|RNF152	ENSG00000176641|ENST00000312828|RNF152	ENSG00000176641|ENST00000312828|RNF152	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.4563898941	1	897.45639	896.449113	1.6006	0.0014365	-0.36449	-0.00032712	1.2361	0.0011094	897.4561329495112	24.598	0.14473	24.598	24.55	24.695	0	384	94	1.3911947	0.05535841	1.3911947	282.89987	0	11.257172						393	7	4	NaN	NaN	NaN	0.050534	1	6008	6008		78.398	31.358	1	62128			14610	5033	8496	8669	11520	11520					-0.0032531646767210987
LPDDPEVL	8	Unmodified	_LPDDPEVL_					0	0	0		ENSG00000176641|ENST00000312828|RNF152	ENSG00000176641|ENST00000312828|RNF152	ENSG00000176641|ENST00000312828|RNF152	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.4563898941	1	897.45639	896.449113	1.3596	0.0012202	-0.052537	-4.715E-05	1.3071	0.001173	897.4565787556378	24.598	0.21702	24.586	24.514	24.731	-0.012394	381	79	1.3929803	0.046417356	1.3914609	283.26297	0	9.438995						367	10	3	NaN	NaN	NaN	0.084194	1	5895	5895		68.108	21.068	1	58856			14611	5033	8496	8669	11521	11521					-0.0032531646767210987
LPDDPRQM	8	Unmodified	_LPDDPRQM_					0	0	0		ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.2343842568	2	486.234384	970.454216	1.9868	0.00096607	-1.3594	-0.00066099	0.62743	0.00030508	486.23377273966935	17.021	0.21595	17.021	16.901	17.117	0	1335	58	0.8154261	0.035111487	0.8154261	331.24692	0	14.263184						278	10	3	NaN	NaN	NaN	0.43738	1	7608	7608		34.439	12.668	1	31175			14612	6134	8497	8670	11522	11522					-0.03219335876690366
LPDDPRQM	8	Unmodified	_LPDDPRQM_					0	0	0		ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.2343842568	2	486.234384	970.454216	1.7984	0.00087443	-0.55867	-0.00027164	1.2397	0.00060279	486.23386175603116	17.018	0.23997	17.005	16.909	17.149	-0.013294	1338	52	0.81357855	0.03141558	0.8120591	330.49637	0	12.76181						215	11	2	NaN	NaN	NaN	0.47456	1	7466	7466		32.453	10.682	1	31712			14613	6134	8497	8670	11523	11523					-0.03219335876690366
LPDDPRQMTL	10	Oxidation (M)	_LPDDPRQM(Oxidation (M))TL_		LPDDPRQM(1)TL		LPDDPRQM(45)TL	0	0	1		ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	ENSG00000258289|ENST00000549115|CHURC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2977127951001	2	601.297713	1200.58087	2.0592	0.0012382	-1.9771	-0.0011888	0.082102	4.9368E-05	601.2968819620042	18.221	0.26389	18.221	18.125	18.388	0	1182	106	0.9093879	0.06431645	0.9093879	368.42557	0	26.056915						497	12	4	NaN	NaN	NaN	0.10967	1	16492	16492		44.633	10.179	1	83236			14614	6134	8498	8671	11524	11524		623			-0.011394544422046238
LPDDVAISA	9	Unmodified	_LPDDVAISA_					0	0	0		ENSG00000100365|ENST00000248899|NCF4;nc|ENSG00000100365|Q15080-3|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4672889313999	1	900.467289	899.460012	2.2638	0.0020385	-0.21362	-0.00019236	2.0502	0.0018461	900.4668596398599	22.887	0.048225	22.887	22.887	22.935	0	399	40	1.382264	0.02322483	1.382264	281.06958	0	4.7225037						44	3	2	NaN	NaN	NaN	0.23112	1	6054	6054		23.334	4.2161	1	2748.1			14615	1237	8499	8672	11525	11525					0.00626085906606022
LPDEASEAF	9	Unmodified	_LPDEASEAF_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131650-3131884:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4414681114	1	978.441468	977.434192	1.9504	0.0019083	-0.79956	-0.00078232	1.1508	0.001126	978.4414274720802	22.405	0.072243	22.405	22.38	22.453	0	309	52	1.435777	0.03028047	1.435777	291.5997	0	6.149811						83	4	2	NaN	NaN	NaN	0.47587	1	7807	7807		10.605	1.4818	1	5421.2			14616	5698	8500	8673	11526	11526					-0.055428083356673596
LPDEDLAAF	9	Unmodified	_LPDEDLAAF_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4778536177	1	990.477854	989.470577	1.3314	0.0013187	2.0974	0.0020774	3.4288	0.0033961	990.4803858760445	27.639	0.12064	27.629	27.629	27.75	-0.009552	225	76	1.4855686	0.044412017	1.4840492	301.66113	0	9.018372						205	6	3	NaN	NaN	NaN	0.25448	1	8019	8019		21.835	1.3863	1	23231			14617	5339	8501	8674	11527	11527					-0.024579314389484352
LPDEDLASF	9	Unmodified	_LPDEDLASF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4727682398001	1	1006.47277	1005.46549	1.6918	0.0017027	1.7619	0.0017733	3.4537	0.0034761	1006.4741803506747	26.795	0.21759	26.795	26.77	26.988	0	222	115	1.4873441	0.06753135	1.4873441	301.95566	0	13.709991						394	10	3	NaN	NaN	NaN	0.062072	1	8785	8785		41.785	12.186	1	103500			14618	561;7899	8502	8675	11528	11528					-0.03702235301557266
LPDEDLASF	9	Unmodified	_LPDEDLASF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4727682398001	1	1006.47277	1005.46549	1.4839	0.0014936	1.9442	0.0019568	3.4281	0.0034503	1006.474608363512	26.818	0.12069	26.808	26.759	26.88	-0.010645	222	109	1.4873441	0.06396353	1.4858247	301.95566	0	12.985626						451	6	4	NaN	NaN	NaN	0.10956	1	8614	8614		34.439	2.7633	1	101530			14619	561;7899	8502	8675	11529	11529					-0.03702235301557266
LPDEEIFQQL	10	Unmodified	_LPDEEIFQQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.31388578805	2	616.313886	1230.61322	1.3434	0.00082794	-2.9243	-0.0018023	-1.5809	-0.00097434	616.3127716648402	30.415	0.19307	30.415	30.366	30.56	0	1167	88	0.91857195	0.053233266	0.91857195	372.04318	0	21.56073						382	9	4	NaN	NaN	NaN	0.00032785	1	17271	17271		95.62	52.625	1	242280			14620	4650	8503	8676	11530	11530					0.007136562324149054
LPDEEIFQQL	10	Unmodified	_LPDEEIFQQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.31388578805	2	616.313886	1230.61322	0.95357	0.0005877	-4.3806	-0.0026998	-3.4271	-0.0021121	616.3121421204049	30.39	0.24129	30.383	30.335	30.576	-0.0064106	1164	88	0.9204082	0.053227544	0.91888875	372.7869	0	21.55841						575	11	4	NaN	NaN	NaN	0.026555	1	16560	16560		60.982	15.155	1	293000			14621	4650	8503	8676	11531	11531					0.007136562324149054
LPDEEMDHELG	11	Unmodified	_LPDEEMDHELG_					0	0	0			REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	REV__MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.77426748855	2	642.774267	1283.53398	1.6624	0.0010686	-3.69	-0.0023718	-2.0276	-0.0013033	643.2725868839098	30.39	0.16893	30.383	30.311	30.48	-0.0064106	1143	43	0.9332562	0.025689125	0.93173677	377.81772	0	10.399933						157	8	4	NaN	NaN	NaN	0.66717	1	17663	17663		9.6116	0.69255	1	11845	+		14622	13065	8504	8677	11532	11532					-0.09644358784021279
LPDEGAVDL	9	Unmodified	_LPDEGAVDL_					0	0	0		RC3H1|p.Q619Gfs*18|1|0.07|ENSG00000135870|chr1:173962072-173962073|-/AGATTCCACC|frameshift_variant;nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1	RC3H1|p.Q619Gfs*18|1|0.07|ENSG00000135870|chr1:173962072-173962073|-/AGATTCCACC|frameshift_variant	RC3H1|p.Q619Gfs*18|1|0.07|ENSG00000135870|chr1:173962072-173962073|-/AGATTCCACC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4622035535	1	928.462204	927.454927	1.2389	0.0011503	2.2954	0.0021312	3.5343	0.0032815	928.4643468405285	23.923	0.14471	23.91	23.837	23.982	-0.013048	333	73	1.4215236	0.042778492	1.4200041	288.9211	0	8.694611						169	7	2	NaN	NaN	NaN	0.16171	1	6411	6411		27.789	4.4544	1	14473			14623	2971	8505	8678	11533	11533					-0.011702179559961223
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2902137265002	2	522.290214	1042.56587	1.9969	0.001043	-0.99127	-0.00051773	1.0057	0.00052525	522.2893247578116	21.681	0.2409	21.681	21.585	21.826	0	1266	100	0.85786515	0.06084478	0.85786515	348.14978	0	24.69278						604	11	4	NaN	NaN	NaN	0.030261	1	10333	10333		58.769	6.0111	1	323440			14624	1300	8506	8679	11534	11534					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2902137265002	2	522.290214	1042.56587	1.9128	0.00099904	-0.41687	-0.00021773	1.4959	0.00078131	522.2895686571992	21.681	0.24057	21.667	21.595	21.836	-0.013895	1266	76	0.85786515	0.046079576	0.8563457	348.14978	0	18.700562						492	11	3	NaN	NaN	NaN	0.0098181	1	10127	10127		92.758	40	1	309210			14625	1300	8506	8679	11535	11535					0.046294217521108294
LPDETEVVE	9	Unmodified	_LPDETEVVE_					0	0	0		ENSG00000113140|ENST00000231061|SPARC;ENST00000521327.1_1_5:151052612-151066451:-|nuORF	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.4938976124	1	1030.4939	1029.48662	1.1395	0.0011743	-2.1269	-0.0021917	-0.98731	-0.0010174	1030.4912816782446	20.742	0.072298	20.728	20.68	20.752	-0.014088	246	49	1.4731345	0.028431177	1.4716152	298.97647	0	5.7702026						80	4	2	NaN	NaN	NaN	0.04947	1	9548	9548		47.136	18.469	1	9977.2			14626	1901	8507	8680	11536	11536					-0.02694269992707632
LPDFERESL	9	Unmodified	_LPDFERESL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant;ENST00000559886.1_1_15:64045105-64067822:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.27984600545	2	553.279846	1104.54514	1.3049	0.00072195	-1.4911	-0.00082499	-0.18623	-0.00010304	553.2796153775154	22.669	0.24109	22.655	22.583	22.824	-0.01354	1185	118	0.90755045	0.07175994	0.906031	368.0442	0	29.101196						277	11	2	NaN	NaN	NaN	0.33202	1	12691	12691		16.858	1.8454	1	39866			14627	1453	8508	8681	11537	11537					-0.0029516862757645868
LPDFGGNVL	9	Unmodified	_LPDFGGNVL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4883587245002	1	931.488359	930.481082	1.9728	0.0018376	-2.2823	-0.0021259	-0.30951	-0.0002883	931.4867684591735	28.605	0.16891	28.605	28.532	28.701	0	309	115	1.435777	0.06773257	1.435777	291.8042	0	13.765808						463	8	4	NaN	NaN	NaN	0.070055	1	6619	6619		40.154	4.8573	1	78038			14628	7955	8509	8682	11538	11538					0.013060960061579863
LPDFPALVL	9	Unmodified	_LPDFPALVL_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.79186095844994	2	492.791861	983.569169	1.6574	0.00081675	-2.7894	-0.0013746	-1.132	-0.00055783	492.7901679504276	36.495	0.048283	36.495	36.471	36.519	0	1308	31	0.83204526	0.018456757	0.83204526	337.9351	0	7.4961853						46	3	2	NaN	NaN	NaN	0.56671	1	8016	8016		6.8632	0	1	3069.9			14629	4234	8510	8683	11539	11539					0.07672716596744067
LPDFPALVL	9	Unmodified	_LPDFPALVL_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5764454503	1	984.576445	983.569169	1.9091	0.0018797	0.41808	0.00041164	2.3272	0.0022913	984.576322022697	36.495	0.19296	36.495	36.446	36.639	0	198	88	1.5015416	0.051446915	1.5015416	304.92978	0	10.447723						450	9	4	NaN	NaN	NaN	0.030391	1	8017	8017		58.599	14.297	1	69358			14630	4234	8510	8683	11540	11540					0.07672716596744067
LPDFPALVL	9	Unmodified	_LPDFPALVL_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5764454503	1	984.576445	983.569169	1.8522	0.0018236	-0.19404	-0.00019105	1.6581	0.0016326	984.5753792530453	36.493	0.19279	36.494	36.422	36.615	0.0016747	198	82	1.5015416	0.04788363	1.5000222	304.92978	0	9.724091						430	9	4	NaN	NaN	NaN	0.03623	1	7844	7844		52.758	21.197	1	71783			14631	4234	8510	8683	11541	11541					0.07672716596744067
LPDFPALVL	9	Unmodified						0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.791861	983.569169	2.2908	0.0011289	-1.9713	-0.00097146	0.31947	0.00015743	492.79270597792953	36.493	0.024132	36.494	36.494	36.519	0.0016747	1308	28	0.83204526	0.016611993	0.8305259	337.9351		6.7469482	-0.00016104	0.00044275	-0.00075972	NaN	6.8632	32	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1921.7			14632	4234	8510	8683							0.07672716596744067
LPDFTELDL	9	Unmodified	_LPDFTELDL_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5353684965999	1	1062.53537	1061.52809	1.6694	0.0017737	-1.1604	-0.001233	0.50894	0.00054076	1062.53315431352	32.925	0.31376	32.925	32.756	33.069	0	144	133	1.533442	0.07787967	1.533442	311.09183	0	15.799561						811	14	4	NaN	NaN	NaN	0.028349	1	11179	11179		61.271	14.135	1	150640			14633	2737	8511	8684	11542	11542					-0.00021089233382554085
LPDFTELDL	9	Unmodified	_LPDFTELDL_					0	0	0		ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	ENSG00000132005|ENST00000254325|RFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5353684965999	1	1062.53537	1061.52809	1.3176	0.0014	0.24948	0.00026509	1.5671	0.0016651	1062.53555847101	32.924	0.19291	32.921	32.873	33.066	-0.0024757	141	133	1.5352125	0.07787967	1.5336931	311.451	0	15.799591						589	9	4	NaN	NaN	NaN	0.028349	1	10928	10928		61.271	8.513	1	120520			14634	2737	8511	8684	11543	11543					-0.00021089233382554085
LPDGESNVL	9	Unmodified	_LPDGESNVL_					0	0	0		nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1;DNM3-RFWD2|1|fusion;nc|ENSG00000143207|Q8NHY2-3|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4731025908001	1	943.473103	942.465826	1.5187	0.0014329	0.43506	0.00041047	1.9538	0.0018433	943.4740673992726	21.97	0.16857	21.956	21.932	22.101	-0.013895	306	91	1.4375578	0.053456068	1.4360384	292.11194	0	10.862274						164	8	2	NaN	NaN	NaN	0.19268	1	6731	6731		25.801	2.6834	1	13487			14635	3406	8512	8685	11544	11544					-0.007708155817113038
LPDGSTIEI	9	Unmodified	_LPDGSTIEI_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4935036819	1	944.493504	943.486227	2.0138	0.001902	0.77036	0.0007276	2.7841	0.0026296	944.4943006661262	25.491	0.26537	25.491	25.395	25.66	0	312	76	1.433996	0.044530153	1.433996	291.38364	0	9.04837						390	12	3	NaN	NaN	NaN	0.032826	1	6907	6907		55.413	13.629	1	52320			14636	3140	8513	8686	11545	11545					0.012223550780959158
LPDGTSLTQTF	11	Unmodified	_LPDGTSLTQTF_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1179.5891949810998	1	1179.58919	1178.58192	2.5142	0.0029657	-1.2549	-0.0014802	1.2593	0.0014855	1179.5885417461147	26.167	0.12069	26.156	26.107	26.228	-0.011135	69	46	1.5776473	0.026486635	1.5761279	319.65164	0	5.3665466						159	6	3	NaN	NaN	NaN	3.5092E-07	1	15202	15202		91.973	66.291	1	14405			14637	4120	8514	8687	11546	11546					-0.00022916801685823884
LPDGTTVTV	9	Unmodified	_LPDGTTVTV_					0	0	0		nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF	nc|ENSG00000143376|Q96L92-3|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4829389956001	1	902.482939	901.475663	2.0093	0.0018134	-1.0715	-0.000967	0.93786	0.0008464	902.4822646233329	21.826	0.19269	21.826	21.73	21.922	0	363	73	1.4036897	0.04283309	1.4036897	285.41666	0	8.709381						298	9	3	NaN	NaN	NaN	0.04947	1	6106	6106		47.136	2.8334	1	43173			14638	3416	8515	8688	11547	11547					0.020983724236771195
LPDGTTVTV	9	Unmodified	_LPDGTTVTV_					0	0	0		nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF	nc|ENSG00000143376|Q96L92-3|SNX27	nc|ENSG00000143376|Q96L92-3|SNX27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4829389956001	1	902.482939	901.475663	1.753	0.0015821	-0.88703	-0.00080053	0.866	0.00078155	902.4818516092477	21.826	0.2167	21.812	21.715	21.932	-0.013895	366	82	1.4019053	0.048195004	1.4003859	285.05383	0	9.799622						315	10	3	NaN	NaN	NaN	0.056143	1	5983	5983		44.302	12.741	1	48388			14639	3416	8515	8688	11548	11548					0.020983724236771195
LPDGYEFKF	9	Unmodified	_LPDGYEFKF_					0	0	0		ENST00000472321.1_1_22:38074415-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	ENST00000472321.1_1_22:38074415-38075753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.27403234605	2	558.274032	1114.53351	2.0122	0.0011234	1.5852	0.00088498	3.5974	0.0020083	558.2742505674572	25.732	0.16894	25.721	25.696	25.865	-0.0116	1218	58	0.8873258	0.034959912	0.8858064	359.8026	0	14.175934						175	8	2	NaN	NaN	NaN	0.38313	1	13070	13070		14.425	0	1	42423			14640	1193	8516	8689	11549	11549					-0.019173656509110515
LPDHINIVL	9	Unmodified	_LPDHINIVL_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.30566682545	2	517.305667	1032.59678	1.8245	0.0009438	-2.205	-0.0011407	-0.38058	-0.00019688	517.3048866476383	26.77	0.1694	26.77	26.746	26.915	0	1278	61	0.85049206	0.036869586	0.85049206	345.20096	0	14.964783						285	8	4	NaN	NaN	NaN	0.048656	1	9901	9901		47.482	2.8431	1	119940			14641	2263	8517	8690	11550	11550					0.08178619856971636
LPDHINIVL	9	Unmodified	_LPDHINIVL_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.30566682545	2	517.305667	1032.59678	1.2381	0.00064046	-2.6599	-0.001376	-1.4218	-0.0007355	517.3043040856955	26.818	0.24133	26.808	26.759	27.001	-0.010645	1275	79	0.85233563	0.04791498	0.8508162	345.94925	0	19.447906						356	11	4	NaN	NaN	NaN	0.042816	1	9697	9697		49.961	5.3228	1	118240			14642	2263	8517	8690	11551	11551					0.08178619856971636
LPDHPIVL	8	Unmodified	_LPDHPIVL_					0	0	0		ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.26855303764995	2	452.268553	902.522553	1.3071	0.00059118	-3.4991	-0.0015825	-2.1919	-0.00099134	452.2673599313707	22.814	0.096432	22.814	22.766	22.863	0	1350	58	0.80618626	0.035126686	0.80618626	327.83762	0	14.284393						143	5	3	NaN	NaN	NaN	0.30832	1	6132	6132		41.46	10.669	1	16240			14643	6109	8518	8691	11552	11552					0.06739276765461
LPDHPIVL	8	Unmodified	_LPDHPIVL_					0	0	0		ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	ENSG00000253250|ENST00000517562|C8orf88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.26855303764995	2	452.268553	902.522553	1.1798	0.00053358	-2.5238	-0.0011414	-1.344	-0.00060785	452.2678526553215	22.838	0.096367	22.824	22.8	22.896	-0.01354	1350	55	0.80618626	0.033283353	0.8046668	327.83762	0	13.5347595						153	5	3	NaN	NaN	NaN	0.40747	1	6006	6006		36.036	5.2452	1	15532			14644	6109	8518	8691	11553	11553					0.06739276765461
LPDHYMGLVPL	11	Unmodified	_LPDHYMGLVPL_					0	0	0			REV__ENSG00000158445|ENST00000371741|KCNB1	REV__ENSG00000158445|ENST00000371741|KCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.8311914717001	2	627.831191	1253.64783	1.2135	0.0007619	-5.516	-0.0034631	-4.3024	-0.0027012	627.8278648630263	34.831	0.14473	34.831	34.806	34.951	0	1155	115	0.92591566	0.06975019	0.92591566	374.9411	0	28.24472						305	7	3	NaN	NaN	NaN	0.44477	1	17880	17880		20.449	6.4071	1	27842	+		14645	10166	8519	8692	11554	11554					0.03115200839533827
LPDHYMGLVPL	11	Unmodified						0	0	0			REV__ENSG00000158445|ENST00000371741|KCNB1	REV__ENSG00000158445|ENST00000371741|KCNB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.831191	1253.64783	1.2135	0.0007619	-5.516	-0.0034631	-4.3024	-0.0027012	627.8278648630263	34.831	0.14473	34.831	34.806	34.951	0	1155	115	0.92591566	0.06975019	0.92591566	374.9411		28.24472	-0.010964	-0.000529	0.0016775	NaN	20.449	305	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27842	+		14646	10166	8519	8692							0.03115200839533827
LPDHYMGLVPL	11	Unmodified						0	0	0			REV__ENSG00000158445|ENST00000371741|KCNB1	REV__ENSG00000158445|ENST00000371741|KCNB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.831191	1253.64783	1.0266	0.00064456	-4.8043	-0.0030163	-3.7777	-0.0023717	627.8283878315667	34.853	0.19286	34.853	34.78	34.973	-0.0006485	1158	109	0.92408	0.06607199	0.9225606	374.19778		26.755249	0.010964	0.00036462	-0.0016775	NaN	20.449	334	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28768	+		14647	10166	8519	8692							0.03115200839533827
LPDIALDVF	9	Unmodified	_LPDIALDVF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5506246303001	1	1002.55062	1001.54335	1.7931	0.0017977	1.1817	0.0011847	2.9748	0.0029824	1002.55040110916	34.806	0.19299	34.806	34.758	34.951	0	165	151	1.5210435	0.08869696	1.5210435	308.81357	0	18.007935						749	9	5	NaN	NaN	NaN	0.018156	1	8661	8661		74.332	21.708	1	217610			14648	2501;7938	8520	8693	11555	11555					0.04263822354482727
LPDIALDVF	9	Unmodified	_LPDIALDVF_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5506246303001	1	1002.55062	1001.54335	1.8288	0.0018335	0.75835	0.00076028	2.5872	0.0025938	1002.5500478585694	34.805	0.19287	34.804	34.756	34.949	-0.0006485	165	139	1.5210435	0.081575274	1.5195241	308.81357	0	16.561981						687	9	4	NaN	NaN	NaN	0.021105	1	8488	8488		70.6	31.141	1	218810			14649	2501;7938	8520	8693	11556	11556					0.04263822354482727
LPDIKVLTL	9	Unmodified	_LPDIKVLTL_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.32606791655	2	506.326068	1010.63758	1.7749	0.00089868	-0.84352	-0.0004271	0.93139	0.00047159	506.32562142080553	28.605	0.12064	28.605	28.581	28.701	0	1224	112	0.883646	0.06816828	0.883646	358.7601	0	27.6763						315	6	4	NaN	NaN	NaN	0.022185	1	9015	9015		69.233	18.918	1	55444			14650	2005	8521	8694	11557	11557					0.13268961176606808
LPDIKVLTL	9	Unmodified	_LPDIKVLTL_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.32606791655	2	506.326068	1010.63758	1.0004	0.00050651	-0.39504	-0.00020002	0.60532	0.00030649	506.325828755302	28.628	0.096491	28.62	28.572	28.668	-0.0083504	1224	109	0.883646	0.06632227	0.88212657	358.7601	0	26.926819						323	5	4	NaN	NaN	NaN	0.030261	1	8840	8840		58.769	5.6291	1	54956			14651	2005	8521	8694	11558	11558					0.13268961176606808
LPDINIYQL	9	Unmodified	_LPDINIYQL_					0	0	0		ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;TFB2M-SMYD3|3|fusion;ENSG00000185420|ENST00000490107|SMYD3;TFB2M-SMYD3|4|fusion;TFB2M-SMYD3|1|fusion;TFB2M-SMYD3|2|fusion	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.5986374554	1	1088.59864	1087.59136	1.3314	0.0014494	-0.55044	-0.00059921	0.78098	0.00085017	1088.5986445378626	31.766	0.14483	31.766	31.694	31.839	0	75	67	1.5741152	0.038865685	1.5741152	319.24503	0	7.882324						178	7	2	NaN	NaN	NaN	0.032689	1	12290	12290		55.592	0	1	19081			14652	5413	8522	8695	11559	11559					0.05106896274514838
LPDINIYQL	9	Unmodified	_LPDINIYQL_					0	0	0		ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;TFB2M-SMYD3|3|fusion;ENSG00000185420|ENST00000490107|SMYD3;TFB2M-SMYD3|4|fusion;TFB2M-SMYD3|1|fusion;TFB2M-SMYD3|2|fusion	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.8029569610001	2	544.802957	1087.59136	0.62412	0.00034002	-1.8775	-0.0010229	-1.2534	-0.00068285	544.8017423684055	31.741	0.19311	31.737	31.688	31.881	-0.0044155	1230	49	0.8799654	0.02945429	0.878446	356.92603	0	11.947052						144	9	2	NaN	NaN	NaN	0.59509	1	11984	11984		5.6942	0.50528	1	15372			14653	5413	8522	8695	11560	11560					0.05106896274514838
LPDINIYQL	9	Unmodified	_LPDINIYQL_					0	0	0		ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;TFB2M-SMYD3|3|fusion;ENSG00000185420|ENST00000490107|SMYD3;TFB2M-SMYD3|4|fusion;TFB2M-SMYD3|1|fusion;TFB2M-SMYD3|2|fusion	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.5986374554	1	1088.59864	1087.59136	0.35832	0.00039007	-0.20172	-0.00021959	0.1566	0.00017047	1088.5988369057573	31.765	0.096588	31.761	31.688	31.785	-0.0044155	72	67	1.5758814	0.038865685	1.5743619	319.6032	0	7.8822937						180	5	3	NaN	NaN	NaN	0.026469	1	11985	11985		63.731	5.5309	1	18534			14654	5413	8522	8695	11561	11561					0.05106896274514838
LPDINIYQL	9	Unmodified						0	0	0		ENST00000366516.5_1_1:245912867-246093251:-|nuORF;nc|ENSG00000185420|Q9H7B4-2|SMYD3;ENST00000366517.5_1_1:245912867-246116553:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;TFB2M-SMYD3|3|fusion;ENSG00000185420|ENST00000490107|SMYD3;TFB2M-SMYD3|4|fusion;TFB2M-SMYD3|1|fusion;TFB2M-SMYD3|2|fusion	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	ENST00000366516.5_1_1:245912867-246093251:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.802957	1087.59136	0.83681	0.0004559	-1.2151	-0.00066198	-0.37827	-0.00020608	544.8026773040795	31.742	0.12068	31.742	31.718	31.839	0	1233	43	0.87812483	0.025772452	0.87812483	356.17944		10.453674	0.0027523	0.00037106	-0.00016058	NaN	5.6942	135	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10530			14655	5413	8522	8695							0.05106896274514838
LPDIYGWPV	9	Unmodified	_LPDIYGWPV_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2791177239501	2	530.279118	1058.54368	1.8647	0.00098882	0.86623	0.00045934	2.7309	0.0014482	530.2797814210604	22.718	0.096529	22.718	22.67	22.766	0	1257	52	0.86339295	0.031327307	0.86339295	350.32416	0	12.711151						92	5	2	NaN	NaN	NaN	0.53206	1	11030	11030		8.2903	0.045466	1	10700			14656	5638	8523	8696	11562	11562					0.01675242074338712
LPDIYGWPV	9	Unmodified						0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.279118	1058.54368	1.3156	0.00069766	-1.6657	-0.0008833	-0.35008	-0.00018564	530.2779370705865	22.741	0.048246	22.728	22.68	22.728	-0.01354	1257	31	0.86339295	0.018420875	0.8618735	350.3242		7.474304	0.0049913	-0.00087722	-0.00075972	NaN	8.2903	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5385.8			14657	5638	8523	8696							0.01675242074338712
LPDIYPDLL	9	Unmodified	_LPDIYPDLL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5768393808	1	1058.57684	1057.56956	1.3047	0.0013811	0.07967	8.4336E-05	1.3844	0.0014655	1058.577273721078	33.383	0.12067	33.383	33.335	33.456	0	87	85	1.5670487	0.049481153	1.5670487	317.92493	0	10.038788						333	6	4	NaN	NaN	NaN	0.042816	1	10998	10998		49.961	10.503	1	45126			14658	4531	8524	8697	11563	11563					0.043080915259679387
LPDIYPDLL	9	Unmodified	_LPDIYPDLL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7920579237001	2	529.792058	1057.56956	0.32115	0.00017014	-1.25	-0.00066225	-0.92887	-0.00049211	529.791985249627	33.382	0.12066	33.38	33.332	33.452	-0.0018501	1278	46	0.85049206	0.027650714	0.8489726	345.0937	0	11.219482						169	6	3	NaN	NaN	NaN	0.25448	1	10767	10767		21.835	1.3217	1	20018			14659	4531	8524	8697	11564	11564					0.043080915259679387
LPDIYPDLL	9	Unmodified	_LPDIYPDLL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5768393808	1	1058.57684	1057.56956	0.95304	0.0010089	0.53265	0.00056386	1.4857	0.0015727	1058.5776364247158	33.382	0.12066	33.38	33.332	33.452	-0.0018501	78	79	1.5723488	0.04594183	1.5708294	319.0002	0	9.32074						325	6	3	NaN	NaN	NaN	0.048656	1	10768	10768		47.482	0.34574	1	42031			14660	4531	8524	8697	11565	11565					0.043080915259679387
LPDKTIASL	9	Unmodified	_LPDKTIASL_					0	0	0		nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.28440006709997	2	479.2844	956.554247	1.5191	0.00072807	-1.8724	-0.00089741	-0.35331	-0.00016934	479.2835301265748	20.622	0.21688	20.622	20.573	20.79	0	1326	55	0.8209676	0.033247292	0.8209676	333.56573	0	13.508636						315	10	4	NaN	NaN	NaN	0.071077	1	7260	7260		40.006	0	1	103420			14661	2153	8525	8698	11566	11566					0.0742322472875685
LPDKWQHDL	9	Unmodified	_LPDKWQHDL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.53297910263336	3	384.532979	1150.57711	2.0512	0.00078876	-1.4425	-0.00055467	0.60875	0.00023409	384.5323894863731	18.197	0.16784	18.197	18.149	18.316	0	1479	58	0.72651637	0.035290897	0.72651637	441.72006	0	21.456757						233	8	3	NaN	NaN	NaN	0.40649	1	14833	14833		8.9416	5.3471	1	37620			14662	5318	8526	8699	11567	11567					0.007842438462375867
LPDKWQHDL	9	Unmodified	_LPDKWQHDL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.53297910263336	3	384.532979	1150.57711	2.1035	0.00080885	-0.88551	-0.00034051	1.2179	0.00046834	384.53247013761165	18.314	0.11999	18.3	18.228	18.348	-0.01395	1479	61	0.72651637	0.037150323	0.7249969	441.72006	0	22.58728						218	6	3	NaN	NaN	NaN	0.19268	1	14329	14329		18.558	7.593	1	32943			14663	5318	8526	8699	11568	11568					0.007842438462375867
LPDKWQHDL	9	Unmodified	_LPDKWQHDL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2958304206501	2	576.29583	1150.57711	1.9856	0.0011443	1.0541	0.0006075	3.0397	0.0017518	576.2964060200505	18.314	0.16793	18.3	18.18	18.348	-0.01395	1212	55	0.8910048	0.033103883	0.88948536	361.15613	0	13.418182						286	8	4	NaN	NaN	NaN	0.10206	1	14331	14331		35.523	10.961	1	46739			14664	5318	8526	8699	11569	11569					0.007842438462375867
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.55578374136667	3	433.555784	1297.64552	1.6672	0.00072281	-1.9851	-0.00086065	-0.31794	-0.00013784	433.55477639512947	22.718	0.14469	22.718	22.694	22.838	0	1455	88	0.7413668	0.053806603	0.7413668	450.14453	0	32.67041						386	7	4	NaN	NaN	NaN	0.031913	1	18733	18733		49.26	28.573	1	94500			14665	5318	8527	8700	11570	11570					0.008604884260876133
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.83003737875	2	649.830037	1297.64552	1.9221	0.001249	-2.001	-0.0013003	-0.078944	-5.13E-05	649.8288418650066	22.718	0.096485	22.718	22.694	22.79	0	1119	73	0.9479278	0.04401946	0.9479278	383.7129	0	17.818695						257	5	4	NaN	NaN	NaN	0.2055	1	18734	18734		35.056	15.893	1	61843			14666	5318	8527	8700	11571	11571					0.008604884260876133
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.83003737875	2	649.830037	1297.64552	1.3394	0.00087036	-1.7161	-0.0011152	-0.37672	-0.0002448	649.8290068303098	22.838	0.12041	22.824	22.752	22.872	-0.01354	1119	73	0.9479278	0.044014752	0.94640833	383.7129	0	17.816803						304	6	5	NaN	NaN	NaN	0.26962	1	17896	17896		29.547	10.383	1	61012			14667	5318	8527	8700	11572	11572					0.008604884260876133
LPDKWQHDLF	10	Unmodified	_LPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.55578374136667	3	433.555784	1297.64552	1.2616	0.00054697	-1.4014	-0.00060757	-0.13978	-6.06E-05	433.5548844171273	22.814	0.16867	22.8	22.752	22.921	-0.01354	1449	79	0.74507743	0.0482378	0.743558	452.39755	0	29.289124						466	8	4	NaN	NaN	NaN	0.16811	1	17897	17897		32.05	15.391	1	101600			14668	5318	8527	8700	11573	11573					0.008604884260876133
LPDLEGRTHIF	11	Unmodified	_LPDLEGRTHIF_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3485942726501	2	649.348594	1296.68264	1.9623	0.0012742	-3.1601	-0.002052	-1.1978	-0.00077782	649.3469914069715	22.814	0.12062	22.814	22.79	22.911	0	1095	70	0.9625867	0.042142153	0.9625867	389.64975	0	17.058899						235	6	4	NaN	NaN	NaN	0.080647	1	18716	18716		42.061	18.944	1	47087			14669	4092	8528	8701	11574	11574					0.0461615997185163
LPDLEGRTHIF	11	Unmodified	_LPDLEGRTHIF_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.2348216706333	3	433.234822	1296.68264	1.7613	0.00076304	-2.8034	-0.0012145	-1.0422	-0.0004515	433.23381022737266	22.814	0.21701	22.814	22.766	22.983	0	1386	121	0.78399014	0.07413161	0.78399014	476.02838	0	45.01172						399	10	4	NaN	NaN	NaN	0.20668	1	18717	18717		22.56	4.5656	1	119890			14670	4092	8528	8701	11575	11575					0.0461615997185163
LPDLEGRTHIF	11	Unmodified	_LPDLEGRTHIF_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3485942726501	2	649.348594	1296.68264	1.4569	0.00094603	-3.8958	-0.0025297	-2.4389	-0.0015837	649.3471062236009	22.91	0.14472	22.896	22.848	22.993	-0.01354	1119	70	0.9479278	0.042146683	0.94640833	383.71588	0	17.06076						285	7	3	NaN	NaN	NaN	0.073935	1	17882	17882		43.765	21.993	1	55895			14671	4092	8528	8701	11576	11576					0.0461615997185163
LPDLEGRTHIF	11	Unmodified						0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	433.234822	1296.68264	1.3334	0.00057766	-2.4837	-0.001076	-1.1504	-0.00049839	433.23368640828386	22.91	0.24104	22.896	22.824	23.065	-0.01354	1386	91	0.78399014	0.055574596	0.7824707	476.02838		33.74411	0.041095	8.9032E-05	-0.00075972	NaN	22.56	380	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106570			14672	4092	8528	8701							0.0461615997185163
LPDLIKEVL	9	Unmodified	_LPDLIKEVL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3235252276	2	520.323525	1038.6325	1.7425	0.00090665	-1.5772	-0.00082067	0.16523	8.5975E-05	520.3229098678212	29.667	0.31371	29.667	29.498	29.811	0	1254	91	0.8652351	0.055238724	0.8652351	351.15808	0	22.418762						495	14	4	NaN	NaN	NaN	0.045904	1	10166	10166		48.65	9.6112	1	100030			14673	5774	8529	8702	11577	11577					0.11472657313993295
LPDLIKEVL	9	Unmodified	_LPDLIKEVL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3235252276	2	520.323525	1038.6325	1.2135	0.00063143	-2.1746	-0.0011315	-0.96107	-0.00050007	520.3224508465756	29.666	0.36191	29.659	29.49	29.852	-0.0070648	1251	94	0.8670771	0.05707693	0.8655577	351.90564	0	23.164825						475	16	4	NaN	NaN	NaN	0.055363	1	9957	9957		44.633	5.5944	1	91586			14674	5774	8529	8702	11578	11578					0.11472657313993295
LPDLLIFQM	9	Unmodified	_LPDLLIFQM_					0	0	0		ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3042782294501	2	545.304278	1088.594	0.47982	0.00026165	-1.7747	-0.00096777	-1.2949	-0.00070612	545.3033499471293	38.468	0.12013	38.468	38.42	38.54	0	1242	61	0.87260187	0.036825776	0.87260187	353.93518	0	14.936859						227	6	3	NaN	NaN	NaN	0.31737	1	12341	12341		17.799	4.7961	1	19008			14675	5844	8530	8703	11579	11579					0.05325028407833088
LPDLLIFQM	9	Unmodified	_LPDLLIFQM_					0	0	0		ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.6012799923	1	1089.60128	1088.594	1.1156	0.0012155	0.55479	0.0006045	1.6704	0.00182	1089.6016635556539	38.468	0.09613	38.468	38.444	38.54	0	69	49	1.5776473	0.028257012	1.5776473	319.95767	0	5.7306824						72	5	2	NaN	NaN	NaN	0.054111	1	12342	12342		45.165	24.716	1	4715.8			14676	5844	8530	8703	11580	11580					0.05325028407833088
LPDLLIFQM	9	Unmodified	_LPDLLIFQM_					0	0	0		ENSG00000198952|ENST00000361813|SMG5;ENST00000489907.2_1_1:156236170-156237375:-|nuORF	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3042782294501	2	545.304278	1088.594	1.4335	0.00078168	-0.58191	-0.00031732	0.85156	0.00046436	545.3035972259362	38.441	0.1442	38.445	38.397	38.542	0.0040245	1242	70	0.87260187	0.042342782	0.8710824	353.93518	0	17.174622						209	7	3	NaN	NaN	NaN	0.33629	1	12034	12034		16.584	5.9792	1	17011			14677	5844	8530	8703	11581	11581					0.05325028407833088
LPDLLLLLH	9	Unmodified	_LPDLLLLLH_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.8340601241501	2	523.83406	1045.65357	0.93235	0.0004884	-2.2016	-0.0011533	-1.2693	-0.00066489	523.8334116302642	32.876	0.14481	32.876	32.852	32.997	0	1218	43	0.8873258	0.025753021	0.8873258	360.092	0	10.450989						151	7	3	NaN	NaN	NaN	0.043119	1	10466	10466		49.833	0	1	20164	+		14678	11690	8531	8704	11582	11582					0.13256667413520518
LPDLLLLLH	9	Unmodified	_LPDLLLLLH_					0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.8340601241501	2	523.83406	1045.65357	0.9932	0.00052027	-0.95464	-0.00050007	0.038554	2.0196E-05	523.833753063718	32.924	0.12062	32.921	32.873	32.993	-0.0024757	1212	43	0.8910048	0.02575022	0.88948536	361.585	0	10.44986						154	6	4	NaN	NaN	NaN	0.02781	1	10256	10256		61.977	0	1	17840	+		14679	11690	8531	8704	11583	11583					0.13256667413520518
LPDLLLLLH	9	Unmodified						0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.83406	1045.65357	0.93235	0.0004884	-2.2016	-0.0011533	-1.2693	-0.00066489	523.8334116302642	32.876	0.14481	32.876	32.852	32.997	0	1218	43	0.8873258	0.025753021	0.8873258	360.092		10.450989	-0.022373	-0.00066504	-0.0010798	NaN	61.977	151	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20164	+		14680	11690	8531	8704							0.13256667413520518
LPDLLLLLH	9	Unmodified						0	0	0			REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	REV__ENST00000311604.7_1_11:1913083-1913311:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.83406	1045.65357	0.9932	0.00052027	-0.95464	-0.00050007	0.038554	2.0196E-05	523.833753063718	32.924	0.12062	32.921	32.873	32.993	-0.0024757	1212	43	0.8910048	0.02575022	0.88948536	361.585		10.44986	0.022373	0.00064138	0.0010798	NaN	61.977	154	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17840	+		14681	11690	8531	8704							0.13256667413520518
LPDLPSSL	8	Unmodified	_LPDLPSSL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4665606499001	1	841.466561	840.459284	1.441	0.0012126	-0.16421	-0.00013818	1.2768	0.0010744	841.4662282905566	27.326	0.096579	27.326	27.302	27.398	0	447	52	1.3536539	0.030429125	1.3536539	275.543	0	6.1940002						102	5	2	NaN	NaN	NaN	0.202	1	5277	5277		49.833	5.5305	1	8978.3			14682	5844	8532	8705	11584	11584					0.032672912575776536
LPDLPSSL	8	Unmodified	_LPDLPSSL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.4665606499001	1	841.466561	840.459284	0.922	0.00077583	1.1285	0.00094963	2.0505	0.0017255	841.4670628778866	27.349	0.12067	27.339	27.315	27.436	-0.010126	447	49	1.3536539	0.028631568	1.3521345	275.543	0	5.8280945						114	6	2	NaN	NaN	NaN	0.202	1	5143	5143		49.833	5.5305	1	9987.2			14683	5844	8532	8705	11585	11585					0.032672912575776536
LPDLTEVTL	9	Unmodified	_LPDLTEVTL_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5561039387002	1	1000.5561	999.548827	1.4195	0.0014203	-1.4315	-0.0014323	-0.01194	-1.1947E-05	1000.5545740490854	30.993	0.16897	30.988	30.915	31.084	-0.0050716	204	91	1.4979934	0.05325198	1.496474	304.142	0	10.81189						284	8	3	NaN	NaN	NaN	3.2142E-07	1	8398	8398		129.63	11.423	1	48268			14684	22	8533	8706	11586	11586					0.04903501146293365
LPDLTEVTL	9	Unmodified	_LPDLTEVTL_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5561039387002	1	1000.5561	999.548827	1.2422	0.0012428	-0.56766	-0.00056797	0.67449	0.00067487	1000.5557105153742	30.559	0.14476	30.553	30.48	30.625	-0.0057564	198	64	1.5015416	0.03725469	1.5000222	304.8624	0	7.563904						178	7	3	NaN	NaN	NaN	0.021105	1	8399	8399		70.6	15.106	1	17357			14685	22	8533	8706	11587	11587					0.04903501146293365
LPDLTEVTL	9	Unmodified						0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.5561	999.548827	1.5254	0.0015263	-0.47408	-0.00047435	1.0513	0.0010519	1000.5561635638102	30.56	0.096542	30.56	30.511	30.608	0	198	61	1.5015416	0.03547871	1.5015416	304.8624		7.2033386	0.003385	5.3286E-05	0.00075972	NaN	70.6	145	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15002			14686	22	8533	8706							0.04903501146293365
LPDLTPTF	8	Unmodified	_LPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.4822107141001	1	903.482211	902.474934	1.8523	0.0016736	-0.12636	-0.00011417	1.726	0.0015594	903.4818924444737	29.112	0.19306	29.112	29.063	29.256	0	315	115	1.4322147	0.067739844	1.4322147	291.2119	0	13.773529						507	9	4	NaN	NaN	NaN	0.050534	1	6126	6126		78.398	31.358	1	119150			14687	5661	8534	8707	11588	11588					0.019795777746253407
LPDLTPTF	8	Unmodified	_LPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.4822107141001	1	903.482211	902.474934	1.761	0.0015911	-0.22358	-0.000202	1.5374	0.0013891	903.4817417413459	29.111	0.19311	29.103	29.055	29.248	-0.0077209	312	118	1.433996	0.06952608	1.4324765	291.57407	0	14.136719						517	9	4	NaN	NaN	NaN	0.084194	1	5999	5999		68.108	18.076	1	125090			14688	5661	8534	8707	11589	11589					0.019795777746253407
LPDLVVEIL	9	Unmodified	_LPDLVVEIL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.81025067685	2	505.810251	1009.60595	1.4497	0.00073327	-1.8054	-0.00091317	-0.35567	-0.0001799	505.8097679360892	36.35	0.096394	36.35	36.302	36.398	0	1284	61	0.8468043	0.03687364	0.8468043	343.8071	0	14.970886						107	5	3	NaN	NaN	NaN	0.31737	1	8975	8975		17.799	0	1	7637.2			14689	2261	8535	8708	11590	11590					0.1015296842265343
LPDLVVEIL	9	Unmodified	_LPDLVVEIL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.81025067685	2	505.810251	1009.60595	2.2529	0.0011396	-7.0797	-0.003581	-4.8267	-0.0024414	505.8077402893007	36.348	0.024033	36.35	36.326	36.35	0.0016747	1287	46	0.8449601	0.027659655	0.84344065	343.05838	0	11.22998						42	2	2	NaN	NaN	NaN	0.31737	1	8802	8802		17.799	3.7574	1	2835.2			14690	2261	8535	8708	11591	11591					0.1015296842265343
LPDMEVVGL	9	Unmodified	_LPDMEVVGL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5070452561002	1	972.507045	971.499769	2.0487	0.0019924	0.3208	0.00031199	2.3695	0.0023044	972.5086368453058	30.391	0.21719	30.391	30.318	30.535	0	258	121	1.4660252	0.07112336	1.4660252	297.76828	0	14.446075						653	10	4	NaN	NaN	NaN	0.025843	1	7653	7653		64.55	30.111	1	172560			14691	5678;276	8536	8709	11592	11592					0.012878895857056705
LPDMEVVGL	9	Unmodified	_LPDMEVVGL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5070452561002	1	972.507045	971.499769	1.4036	0.001365	0.26932	0.00026191	1.673	0.001627	972.5080246036043	30.366	0.2413	30.359	30.287	30.528	-0.0064106	258	109	1.4660252	0.06403148	1.4645058	297.76828	0	13.005615						651	11	4	NaN	NaN	NaN	0.021105	1	7507	7507		70.6	36.161	1	182310			14692	5678;276	8536	8709	11593	11593					0.012878895857056705
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7706025876001	2	505.770603	1009.52665	1.9404	0.00098141	-1.427	-0.00072173	0.51342	0.00025967	505.770476141989	24.285	0.3379	24.285	24.116	24.454	0	1278	88	0.85049206	0.053492785	0.85049206	345.30472	0	21.718353						835	15	5	NaN	NaN	NaN	8.7755E-05	1	8959	8959		123.66	55.549	1	647080			14693	1474	8537	8710	11594	11594					0.02226998196886143
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5339287086002	1	1010.53393	1009.52665	1.3625	0.0013768	0.5831	0.00058924	1.9456	0.0019661	1010.5341224164927	24.261	0.072357	24.261	24.237	24.309	0	201	85	1.4997677	0.04964912	1.4997677	304.46127	0	10.079071						159	4	3	NaN	NaN	NaN	0.026295	1	8960	8960		63.958	23.804	1	16891			14694	1474	8537	8710	11595	11595					0.02226998196886143
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7706025876001	2	505.770603	1009.52665	1.854	0.0009377	-1.0252	-0.0005185	0.82883	0.0004192	505.77051823284387	24.285	0.26548	24.272	24.151	24.417	-0.012749	1278	85	0.85049206	0.051651	0.8489726	345.30472	0	20.970581						798	12	5	NaN	NaN	NaN	0.011942	1	8791	8791		87.021	34.263	1	600920			14695	1474	8537	8710	11596	11596					0.02226998196886143
LPDMVVSHL	9	Unmodified	_LPDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5339287086002	1	1010.53393	1009.52665	1.6345	0.0016517	-0.092175	-9.3146E-05	1.5423	0.0015585	1010.534552793729	24.285	0.048279	24.272	24.248	24.296	-0.012749	198	82	1.5015416	0.04786837	1.5000222	304.8214	0	9.717529						127	3	2	NaN	NaN	NaN	0.01452	1	8793	8793		79.199	39.045	1	13839			14696	1474	8537	8710	11597	11597					0.02226998196886143
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(73)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7680598986501	2	513.76806	1025.52157	2.1123	0.0010852	-1.8552	-0.00095313	0.25708	0.00013208	513.7674905903698	20.935	0.12022	20.935	20.911	21.031	0	1275	79	0.85233563	0.047946036	0.85233563	345.98062	0	19.46228						448	6	5	NaN	NaN	NaN	0.019103	1	9598	9598		73.133	31.348	1	313880			14697	1474	8537	8711	11598	11598		168			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(67)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7680598986501	2	513.76806	1025.52157	2.0963	0.001077	-1.0969	-0.00056356	0.99943	0.00051347	513.7677984514155	20.838	0.26489	20.838	20.742	21.007	0	1263	106	0.85970795	0.0645532	0.85970795	348.9732	0	26.203491						465	6	5	NaN	NaN	NaN	0.023828	1	9599	9599		67.154	17.321	1	311600			14698	1474	8537	8711	11599	11599		168			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)	_LPDM(Oxidation (M))VVSHL_		LPDM(1)VVSHL		LPDM(79)VVSHL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7680598986501	2	513.76806	1025.52157	1.2326	0.00063328	-0.59594	-0.00030618	0.63667	0.0003271	513.7678587716114	20.863	0.24072	20.849	20.752	20.993	-0.014088	1263	103	0.85970795	0.06270546	0.8581885	348.9732	0	25.45346						444	6	5	NaN	NaN	NaN	0.01452	1	9410	9410		79.199	32.063	1	317440			14699	1474	8537	8711	11600	11600		168			0.009826943342659433
LPDMVVSHL	9	Oxidation (M)						0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.76806	1025.52157	1.2766	0.00065589	-0.44333	-0.00022777	0.8333	0.00042812	513.7680354214654	20.935	0.1926	20.921	20.897	21.089	-0.014088	1275	112	0.85233563	0.068256795	0.8508162	345.98062		27.706818	-0.0069345	0.0007539	-0.00075972	NaN	73.133	507	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330880			14700	1474	8537	8711				168			0.009826943342659433
LPDNDLTTL	9	Unmodified	_LPDNDLTTL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5149674055	1	1001.51497	1000.50769	2.05	0.0020531	-0.7097	-0.00071078	1.3403	0.0013423	1001.5143169637095	25.153	0.21714	25.153	25.033	25.25	0	213	82	1.4926696	0.047944546	1.4926696	303.05713	0	9.734192						454	10	3	NaN	NaN	NaN	0.030545	1	8609	8609		58.398	10.916	1	58441			14701	1891	8538	8712	11601	11601					0.007457401068108993
LPDNDLTTL	9	Unmodified	_LPDNDLTTL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5149674055	1	1001.51497	1000.50769	1.8622	0.001865	-0.25532	-0.0002557	1.6069	0.0016093	1001.5147063877201	25.153	0.21716	25.141	25.021	25.238	-0.012011	213	85	1.4926696	0.049717665	1.4911501	303.05713	0	10.094177						430	10	3	NaN	NaN	NaN	0.032689	1	8443	8443		55.592	18.289	1	52892			14702	1891	8538	8712	11602	11602					0.007457401068108993
LPDNILQVL	9	Unmodified	_LPDNILQVL_					0	0	0		ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000460416.2_1_2:203881095-203914720:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.6037228333	1	1024.60372	1023.59645	1.5966	0.0016359	0.61531	0.00063045	2.212	0.0022664	1024.6050400203808	34.059	0.096588	34.059	34.035	34.131	0	183	55	1.510409	0.031913996	1.510409	306.56473	0	6.4775085						174	5	3	NaN	NaN	NaN	0.059222	1	9532	9532		42.995	4.8639	1	20369			14703	3474	8539	8713	11603	11603					0.08559200137142398
LPDNILQVL	9	Unmodified	_LPDNILQVL_					0	0	0		ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000460416.2_1_2:203881095-203914720:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.6037228333	1	1024.60372	1023.59645	1.1552	0.0011837	-0.031799	-3.2581E-05	1.1234	0.0011511	1024.6038670582118	34.058	0.12071	34.056	34.032	34.153	-0.0012474	180	61	1.5121819	0.035452366	1.5106624	306.92456	0	7.1956787						170	6	3	NaN	NaN	NaN	0.03533	1	9354	9354		53.14	22.53	1	19355			14704	3474	8539	8713	11604	11604					0.08559200137142398
LPDNISSVL	9	Unmodified	_LPDNISSVL_					0	0	0		ENST00000494536.5_1_2:64083453-64109797:+|nuORF;ENST00000466642.5_2_2:64084828-64111237:+|nuORF;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000494536.5_1_2:64083453-64109797:+|nuORF	ENST00000494536.5_1_2:64083453-64109797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.5251381613001	1	957.525138	956.517862	1.584	0.0015167	-1.0046	-0.00096192	0.57944	0.00055483	957.5246429058831	27.833	0.096514	27.833	27.784	27.881	0	276	109	1.4553556	0.06401777	1.4553556	295.6659	0	13.005676						295	5	3	NaN	NaN	NaN	0.059222	1	7252	7252		42.995	9.5695	1	47256			14705	4692	8540	8714	11605	11605					0.03786347832055981
LPDNISSVL	9	Unmodified						0	0	0		ENST00000494536.5_1_2:64083453-64109797:+|nuORF;ENST00000466642.5_2_2:64084828-64111237:+|nuORF;ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000494536.5_1_2:64083453-64109797:+|nuORF	ENST00000494536.5_1_2:64083453-64109797:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	957.525138	956.517862	1.2931	0.0012382	-0.80344	-0.00076932	0.48965	0.00046885	957.5247526781721	27.832	0.072454	27.822	27.798	27.87	-0.009552	276	106	1.4553556	0.062229633	1.4538362	295.6659		12.642395	-0.0051808	8.1695E-05	-0.00075972	NaN	42.995	289	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44004			14706	4692	8540	8714							0.03786347832055981
LPDNSAGVVL	10	Unmodified	_LPDNSAGVVL_					0	0	0		ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENSG00000100815|ENST00000267622|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5360371986002	1	984.536037	983.528761	1.7422	0.0017153	0.298	0.00029339	2.0402	0.0020087	984.5361485870932	24.598	0.072407	24.586	24.538	24.61	-0.012394	225	43	1.4855686	0.024861455	1.4840492	301.68616	0	5.048828						85	4	2	NaN	NaN	NaN	0.10101	1	7837	7837		45.827	6.3678	1	7898.5			14707	1277	8541	8715	11606	11606					0.03633750206347486
LPDNSAGVVL	10	Unmodified	_LPDNSAGVVL_					0	0	0		ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENSG00000100815|ENST00000267622|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5360371986002	1	984.536037	983.528761	1.711	0.0016845	3.1468	0.0030981	4.8578	0.0047826	984.5396768212844	24.695	0.072369	24.682	24.658	24.731	-0.012392	228	76	1.4837929	0.044374347	1.4822735	301.32556	0	9.011444						103	4	2	NaN	NaN	NaN	0.16811	1	7838	7838		38.269	1.6829	1	7876.2			14708	1277	8541	8715	11607	11607					0.03633750206347486
LPDPEKPVRL	10	Unmodified	_LPDPEKPVRL_					0	0	0		nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-3|SMCHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.5642792310333	3	388.564279	1162.67101	2.0226	0.0007859	0.39886	0.00015498	2.4214	0.00094089	388.56420682742595	18.508	0.1438	18.508	18.412	18.556	0	1380	49	0.7876915	0.029610872	0.7876915	478.85547	0	18.001099						130	7	2	NaN	NaN	NaN	0.31897	1	15240	15240		26.96	6.4469	1	13995			14709	1338	8542	8716	11608	11608					0.0961796294850501
LPDPEKPVRL	10	Unmodified	_LPDPEKPVRL_					0	0	0		nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-3|SMCHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.5642792310333	3	388.564279	1162.67101	1.8999	0.00073824	-2.1707	-0.00084347	-0.27083	-0.00010524	388.56323835369574	18.554	0.14396	18.54	18.468	18.612	-0.01395	1377	97	0.7895419	0.059266686	0.78802246	479.98038	0	36.02957						173	7	3	NaN	NaN	NaN	0.037492	1	14718	14718		56.466	39.607	1	15155			14710	1338	8542	8716	11609	11609					0.0961796294850501
LPDPFAKIVV	10	Unmodified	_LPDPFAKIVV_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.8315174352001	2	549.831517	1097.64848	1.3081	0.00071925	-2.1479	-0.001181	-0.83974	-0.00046172	549.8300247531607	29.087	0.28964	29.087	28.918	29.208	0	1251	97	0.8670771	0.05888945	0.8670771	351.65802	0	23.883606						508	13	3	NaN	NaN	NaN	0.2504	1	12762	12762		31.198	20.838	1	66134			14711	5802	8543	8717	11610	11610					0.10356363550909009
LPDPFAKIVV	10	Unmodified	_LPDPFAKIVV_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.8315174352001	2	549.831517	1097.64848	1.1829	0.00065038	-3.4367	-0.0018896	-2.2538	-0.0012392	549.829126274528	29.087	0.21718	29.079	28.958	29.175	-0.0077229	1248	88	0.8689189	0.05337143	0.86739945	352.405	0	21.64569						412	10	2	NaN	NaN	NaN	0.095478	1	12429	12429		46.588	26.074	1	67675			14712	5802	8543	8717	11611	11611					0.10356363550909009
LPDPFTPNL	9	Unmodified	_LPDPFTPNL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.26875000289994	2	507.26875	1012.52295	1.9118	0.00096978	-2.7211	-0.0013803	-0.80929	-0.00041053	507.2672150715522	29.932	0.16891	29.932	29.884	30.053	0	1305	49	0.83389086	0.029527605	0.83389086	338.55106	0	11.9878845						195	8	3	NaN	NaN	NaN	0.074859	1	9078	9078		39.459	4.1623	1	23057			14713	2445	8544	8718	11612	11612					0.01718651694648088
LPDPFTPNL	9	Unmodified	_LPDPFTPNL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.26875000289994	2	507.26875	1012.52295	0.86532	0.00043895	-0.31398	-0.00015927	0.55133	0.00027967	507.26868598830606	29.931	0.19303	29.925	29.852	30.045	-0.0064087	1305	58	0.83389086	0.03505838	0.8323714	338.55106	0	14.233337						251	9	4	NaN	NaN	NaN	0.13602	1	8903	8903		30.61	4.4952	1	33641			14714	2445	8544	8718	11613	11613					0.01718651694648088
LPDPFTPNL	9	Unmodified	_LPDPFTPNL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5302235391999	1	1013.53022	1012.52295	1.5844	0.0016058	0.45213	0.00045825	2.0365	0.0020641	1013.53125237239	29.931	0.2413	29.925	29.852	30.094	-0.0064087	216	142	1.4908947	0.08334422	1.4893752	302.64792	0	16.91864						535	11	5	NaN	NaN	NaN	0.012018	1	8906	8906		86.792	36.959	1	118170			14715	2445	8544	8718	11614	11614					0.01718651694648088
LPDPFTPNL	9	Unmodified						0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1013.53022	1012.52295	2.3978	0.0024302	0.62864	0.00063714	3.0264	0.0030674	1013.5311472433484	29.932	0.28965	29.932	29.836	30.125	0	219	148	1.4891195	0.08692765	1.4891195	302.28757		17.646088	0.0036548	0.00010803	-0.00012786	NaN	86.792	618	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123620			14716	2445	8544	8718							0.01718651694648088
LPDPGAHPIL	10	Unmodified	_LPDPGAHPIL_					0	0	0		ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2900167612501	2	515.290017	1028.56548	2.2167	0.0011423	-6.5589	-0.0033798	-4.3422	-0.0022375	515.2880083753098	23.489	0.21694	23.489	23.393	23.61	0	1287	76	0.8449601	0.046114445	0.8449601	342.97333	0	18.718079						194	10	2	NaN	NaN	NaN	0.15427	1	9724	9724		39.459	2.1564	1	43710			14717	7562	8545	8719	11615	11615					0.05234046822897653
LPDPGFQKI	9	Unmodified	_LPDPGFQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.78456724259996	2	507.784567	1013.55458	1.3697	0.0006955	-0.47019	-0.00023875	0.89948	0.00045674	507.78416106264115	21.609	0.12038	21.595	21.547	21.667	-0.013897	1320	61	0.824661	0.036913514	0.8231416	334.79926	0	14.986298						116	6	3	NaN	NaN	NaN	0.40649	1	8959	8959		13.463	1.4144	1	11678			14718	630	8546	8720	11616	11616					0.04834644448601466
LPDPGFQKITL	11	Unmodified	_LPDPGFQKITL_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.85043846985	2	614.850438	1227.68632	1.6069	0.00098799	-1.8784	-0.0011549	-0.27151	-0.00016694	614.848916387888	25.974	0.14479	25.974	25.926	26.07	0	1131	112	0.94059354	0.067940354	0.94059354	380.9725	0	27.518158						359	7	4	NaN	NaN	NaN	0.059168	1	17193	17193		47.511	21.83	1	79253			14719	630	8547	8721	11617	11617					0.08158829745707408
LPDPGFQKITL	11	Unmodified	_LPDPGFQKITL_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.85043846985	2	614.850438	1227.68632	1.7598	0.001082	-0.83267	-0.00051197	0.92714	0.00057005	614.8499326644107	25.974	0.12068	25.962	25.938	26.059	-0.0116	1131	121	0.94059354	0.07346094	0.93907416	380.9725	0	29.75418						415	6	4	NaN	NaN	NaN	0.014448	1	16499	16499		65.465	26.426	1	80683			14720	630	8547	8721	11618	11618					0.08158829745707408
LPDPGFVLL	9	Unmodified	_LPDPGFVLL_					0	0	0		ENST00000479825.1_1_3:57148830-57198985:-|nuORF	ENST00000479825.1_1_3:57148830-57198985:-|nuORF	ENST00000479825.1_1_3:57148830-57198985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5607953861	1	970.560795	969.553519	2.3157	0.0022475	-4.053	-0.0039337	-1.7373	-0.0016862	970.5563831497498	25.805	0.048267	25.805	25.781	25.829	0	261	55	1.4642475	0.031998634	1.4642475	297.41556	0	6.499542						75	3	2	NaN	NaN	NaN	0.62619	1	7595	7595		4.4131	0.84331	1	5465.2			14721	7197	8548	8722	11619	11619					0.06752430079700389
LPDPGFVLL	9	Unmodified						0	0	0		ENST00000479825.1_1_3:57148830-57198985:-|nuORF	ENST00000479825.1_1_3:57148830-57198985:-|nuORF	ENST00000479825.1_1_3:57148830-57198985:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	970.560795	969.553519	2.3739	0.002304	-6.0818	-0.0059027	-3.7079	-0.0035987	970.5549711518239	25.805	0.072411	25.793	25.769	25.841	-0.0116	255	49	1.4678029	0.028437257	1.4662834	298.13773		5.776123	-0.0059296	-0.0010287	0.001018	NaN	4.4131	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5435.8			14722	7197	8548	8722							0.06752430079700389
LPDPGPPSL	9	Unmodified	_LPDPGPPSL_					0	0	0		nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	nc|ENSG00000126456|Q14653-3|IRF3	nc|ENSG00000126456|Q14653-3|IRF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.4774596872002	1	892.47746	891.470183	1.671	0.0014914	0.77869	0.00069496	2.4497	0.0021863	892.4783232042994	24.019	0.072334	24.019	23.995	24.068	0	423	64	1.3679651	0.03756082	1.3679651	278.1996	0	7.638672						96	4	2	NaN	NaN	NaN	0.030669	1	5946	5946		58.235	5.6114	1	7540.4			14723	2502	8549	8723	11620	11620					0.020106936318711632
LPDPGPPSL	9	Unmodified						0	0	0		nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	nc|ENSG00000126456|Q14653-3|IRF3	nc|ENSG00000126456|Q14653-3|IRF3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	892.47746	891.470183	2.2042	0.0019672	-2.9573	-0.0026393	-0.75308	-0.00067211	892.4750150668278	24.043	0.024118	24.031	24.031	24.055	-0.012749	420	52	1.3697531	0.030386925	1.3682337	278.56323		6.179718	0.0055715	-0.0025969	0.0001343	NaN	58.235	42	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3368.8			14724	2502	8549	8723							0.020106936318711632
LPDPGSPRL	9	Unmodified	_LPDPGSPRL_					0	0	0		ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.26654166495	2	476.266542	950.51853	1.7513	0.0008341	-1.1843	-0.00056405	0.56701	0.00027005	476.26566758442374	19.108	0.1439	19.108	19.06	19.204	0	1323	79	0.8228144	0.04803437	0.8228144	334.34616	0	19.518494						316	7	3	NaN	NaN	NaN	0.33202	1	7102	7102		16.858	3.8555	1	88060			14725	5553	8550	8724	11621	11621					0.04129187271757928
LPDPGSPRL	9	Unmodified	_LPDPGSPRL_					0	0	0		ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	ENSG00000188522|ENST00000388995|FAM83G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.26654166495	2	476.266542	950.51853	1.3033	0.0006207	-0.85218	-0.00040587	0.45108	0.00021483	476.2662554368191	19.13	0.28835	19.116	18.972	19.26	-0.014141	1320	79	0.824661	0.04803437	0.8231416	335.0965	0	19.518494						372	13	4	NaN	NaN	NaN	0.12866	1	6971	6971		31.675	15.091	1	86041			14726	5553	8550	8724	11622	11622					0.04129187271757928
LPDPIGTGL	9	Unmodified	_LPDPIGTGL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.4931097514001	1	882.49311	881.485833	1.6031	0.0014147	0.099512	8.7818E-05	1.7026	0.0015026	882.4935190776965	27.205	0.19301	27.205	27.109	27.302	0	420	58	1.3697531	0.03397274	1.3697531	278.61118	0	6.9101562						211	9	2	NaN	NaN	NaN	0.030669	1	5822	5822		58.235	5.4772	1	47422			14727	1141	8551	8725	11623	11623					0.04034980148901468
LPDPIGTGL	9	Unmodified	_LPDPIGTGL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.4931097514001	1	882.49311	881.485833	1.2024	0.0010611	0.2421	0.00021365	1.4445	0.0012747	882.4937248532176	27.204	0.16892	27.194	27.122	27.291	-0.010126	417	58	1.3715409	0.03396547	1.3700215	278.97482	0	6.908661						204	8	2	NaN	NaN	NaN	0.011942	1	5703	5703		87.021	28.422	1	43248			14728	1141	8551	8725	11624	11624					0.04034980148901468
LPDPIIIHL	9	Unmodified	_LPDPIIIHL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.8184100599501	2	515.81841	1029.62227	1.9372	0.00099924	-1.6589	-0.00085568	0.27831	0.00014356	515.8182770258071	29.522	0.16898	29.522	29.474	29.642	0	1254	76	0.8652351	0.04605466	0.8652351	351.19827	0	18.693542						411	8	4	NaN	NaN	NaN	0.0081087	1	9778	9778		96.245	54.267	1	127600			14729	2771	8552	8726	11625	11625					0.10864094379417111
LPDPIIIHL	9	Unmodified	_LPDPIIIHL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.8184100599501	2	515.81841	1029.62227	1.1775	0.00060738	-0.22499	-0.00011605	0.95252	0.00049133	515.8182937409687	29.545	0.19304	29.538	29.466	29.659	-0.0070648	1254	79	0.8652351	0.047889054	0.86371565	351.19827	0	19.43811						412	9	4	NaN	NaN	NaN	0.012648	1	9579	9579		84.879	51.18	1	123780			14730	2771	8552	8726	11626	11626					0.10864094379417111
LPDPLKYYL	9	Unmodified	_LPDPLKYYL_					0	0	0		nc|ENSG00000203880|Q9NV79-3|PCMTD2;ENST00000266078.7_1_20:62903543-62904950:+|nuORF;nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2	nc|ENSG00000203880|Q9NV79-3|PCMTD2	nc|ENSG00000203880|Q9NV79-3|PCMTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3157001955	2	561.3157	1120.61685	1.5667	0.00087944	-1.1416	-0.00064079	0.42515	0.00023864	561.3152445730651	28.822	0.16896	28.822	28.798	28.967	0	1236	67	0.876284	0.040482104	0.876284	355.30173	0	16.414032						149	8	2	NaN	NaN	NaN	0.06409	1	13715	13715		45.827	12.401	1	28151			14731	5857	8553	8727	11627	11627					0.06136370796934898
LPDPLKYYL	9	Unmodified	_LPDPLKYYL_					0	0	0		nc|ENSG00000203880|Q9NV79-3|PCMTD2;ENST00000266078.7_1_20:62903543-62904950:+|nuORF;nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2	nc|ENSG00000203880|Q9NV79-3|PCMTD2	nc|ENSG00000203880|Q9NV79-3|PCMTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.3157001955	2	561.3157	1120.61685	1.1137	0.00062514	-0.18414	-0.00010336	0.92957	0.00052178	561.3153355736106	28.869	0.26546	28.861	28.644	28.909	-0.0083504	1233	67	0.87812483	0.040482104	0.8766054	356.0481	0	16.414032						157	12	2	NaN	NaN	NaN	0.10529	1	13310	13310		39.039	7.3637	1	32267			14732	5857	8553	8727	11628	11628					0.06136370796934898
LPDPQNISL	9	Unmodified	_LPDPQNISL_					0	0	0		ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5360371986002	1	996.536037	995.528761	2.6631	0.0026539	-1.4196	-0.0014147	1.2435	0.0012392	996.5348360844272	26.046	0.21723	26.046	25.974	26.191	0	243	145	1.4749115	0.08535719	1.4749115	299.47205	0	17.331268						516	10	3	NaN	NaN	NaN	0.0040343	1	8416	8416		104.89	49.396	1	156580			14733	5827	8554	8728	11629	11629					0.030817502063428037
LPDPQNISL	9	Unmodified	_LPDPQNISL_					0	0	0		ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5360371986002	1	996.536037	995.528761	2.54	0.0025312	-1.0796	-0.0010758	1.4604	0.0014554	996.53482958729	26.07	0.24135	26.059	25.962	26.204	-0.011137	240	112	1.4766881	0.06578565	1.4751687	299.8328	0	13.357391						499	11	3	NaN	NaN	NaN	0.015447	1	8246	8246		77.761	22.169	1	155660			14734	5827	8554	8728	11630	11630					0.030817502063428037
LPDPRELIEI	10	Unmodified	_LPDPRELIEI_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8400707488	2	597.840071	1193.66559	1.5759	0.00094212	-2.1967	-0.0013133	-0.62088	-0.00037119	597.8388032066244	30.27	0.28958	30.27	30.101	30.391	0	1173	88	0.91489893	0.053233266	0.91489893	370.6827	0	21.568115						603	13	4	NaN	NaN	NaN	0.095478	1	16272	16272		46.588	10.353	1	113130			14735	1651	8555	8729	11631	11631					0.07650239366034839
LPDPRELIEI	10	Unmodified	_LPDPRELIEI_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8400707488	2	597.840071	1193.66559	0.77855	0.00046545	-1.3667	-0.00081707	-0.58816	-0.00035163	597.8392859810093	30.269	0.28955	30.263	30.094	30.383	-0.0064106	1173	85	0.91489893	0.05139488	0.9133795	370.6827	0	20.823273						501	13	3	NaN	NaN	NaN	0.2055	1	15644	15644		35.056	9.2553	1	94443			14736	1651	8555	8729	11632	11632					0.07650239366034839
LPDQAFFVL	9	Unmodified	_LPDQAFFVL_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-2|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5666090455	1	1049.56661	1048.55933	2.4194	0.0025393	-0.71392	-0.00074931	1.7054	0.00179	1049.5654293806008	34.589	0.26534	34.589	34.517	34.782	0	105	133	1.5564433	0.07785487	1.5564433	315.80826	0	15.797058						653	12	3	NaN	NaN	NaN	0.026469	1	10581	10581		63.731	16.595	1	136680			14737	3062	8556	8730	11633	11633					0.03699528591369017
LPDQAFFVL	9	Unmodified	_LPDQAFFVL_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33;nc|ENSG00000137033|O95760-4|IL33;nc|ENSG00000137033|O95760-2|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.5666090455	1	1049.56661	1048.55933	1.648	0.0017297	-0.28284	-0.00029686	1.3652	0.0014328	1049.5664572996852	34.588	0.26519	34.587	34.515	34.78	-0.0006485	102	127	1.5582114	0.07430816	1.556692	316.167	0	15.077393						524	12	2	NaN	NaN	NaN	0.064504	1	10357	10357		40.957	8.5041	1	134910			14738	3062	8556	8730	11634	11634					0.03699528591369017
LPDQDEMDL	9	Unmodified	_LPDQDEMDL_					0	0	0		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.4612172754998	1	1075.46122	1074.45394	1.7494	0.0018814	-0.18893	-0.00020319	1.5604	0.0016782	1075.460771725979	23.971	0.41016	23.971	23.875	24.285	0	165	88	1.5210435	0.05140865	1.5210435	308.5289	0	10.427734						665	18	3	NaN	NaN	NaN	0.0068607	1	11734	11734		98.792	68.182	1	126640			14739	6166	8557	8731	11635	11635					-0.0803080038722328
LPDQDEMDL	9	Unmodified	_LPDQDEMDL_					0	0	0		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.4612172754998	1	1075.46122	1074.45394	1.9183	0.0020631	-0.13037	-0.0001402	1.7879	0.0019229	1075.4609678524666	23.995	0.41009	23.982	23.837	24.247	-0.013048	165	91	1.5210435	0.05318415	1.5195241	308.5289	0	10.787903						640	18	3	NaN	NaN	NaN	0.015447	1	11429	11429		77.761	40.458	1	115000			14740	6166	8557	8731	11636	11636					-0.0803080038722328
LPDQDEMDL	9	Oxidation (M)	_LPDQDEM(Oxidation (M))DL_		LPDQDEM(1)DL		LPDQDEM(58)DL	0	0	1		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.4561318975998	1	1091.45613	1090.44886	2.5101	0.0027396	-0.55029	-0.00060061	1.9598	0.002139	1091.4559099170624	19.684	0.21613	19.684	19.612	19.828	0	147	115	1.5316714	0.06735253	1.5316714	310.62683	0	13.659241						787	10	3	NaN	NaN	NaN	0.030545	1	12401	12401		58.398	31.666	1	98343			14741	6166	8557	8732	11637	11637		625			-0.09275104249832111
LPDQDEMDL	9	Oxidation (M)	_LPDQDEM(Oxidation (M))DL_		LPDQDEM(1)DL		LPDQDEM(100)DL	0	0	1		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.4561318975998	1	1091.45613	1090.44886	1.542	0.001683	0.67499	0.00073672	2.2169	0.0024197	1091.456672791669	19.683	0.26474	19.669	19.597	19.861	-0.014141	147	112	1.5316714	0.06557655	1.530152	310.62683	0	13.299072						768	12	3	NaN	NaN	NaN	0.0040343	1	12097	12097		104.89	62.573	1	92609			14742	6166	8557	8732	11638	11638		625			-0.09275104249832111
LPDQKDLRL	9	Unmodified	_LPDQKDLRL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.54862916683334	3	366.548629	1096.62406	2.1274	0.0007798	-2.8754	-0.001054	-0.748	-0.00027418	366.54752832351915	18.7	0.071928	18.7	18.7	18.772	0	1479	46	0.72651637	0.027864277	0.72651637	441.9769	0	16.951233						91	4	3	NaN	NaN	NaN	0.13999	1	12712	12712		32.377	14.143	1	7676.4			14743	515	8558	8733	11639	11639					0.0796110339738334
LPDQKDLRL	9	Unmodified	_LPDQKDLRL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.54862916683334	3	366.548629	1096.62406	2.1995	0.00080621	-1.0274	-0.00037659	1.1721	0.00042963	366.54822222021727	18.77	0.095997	18.756	18.708	18.804	-0.014059	1479	49	0.72651637	0.029723525	0.7249969	441.9769	0	18.082306						83	5	2	NaN	NaN	NaN	0.33202	1	12380	12380		19.592	7.2852	1	6608.2			14744	515	8558	8733	11640	11640					0.0796110339738334
LPDQLVLLL	9	Unmodified	_LPDQLVLLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.3260679165501	2	512.326068	1022.63758	1.5468	0.00079246	-1.2552	-0.0006431	0.29154	0.00014936	512.3254249208677	37	0.14443	37	36.952	37.097	0	1272	46	0.854179	0.027650714	0.854179	346.74185	0	11.224396						189	7	3	NaN	NaN	NaN	0.055351	1	9474	9474		44.638	2.3209	1	28114			14745	157	8559	8734	11641	11641					0.12716961176613495
LPDQLVLLL	9	Unmodified	_LPDQLVLLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.3260679165501	2	512.326068	1022.63758	0.88971	0.00045582	-0.19753	-0.0001012	0.69218	0.00035462	512.3260754574211	36.998	0.12016	37	36.952	37.072	0.0022507	1272	46	0.854179	0.027647734	0.8526596	346.74185	0	11.223206						151	6	3	NaN	NaN	NaN	0.048656	1	9286	9286		47.482	5.1639	1	15137			14746	157	8559	8734	11642	11642					0.12716961176613495
LPDQLVLLL	9	Unmodified	_LPDQLVLLL_					0	0	0		chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	chr9:95051184-95060694|114|20.38|0.34|5.92|+|0|None,AOPEP|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.6448593665001	1	1023.64486	1022.63758	1.3245	0.0013558	0.33443	0.00034234	1.6589	0.0016981	1023.6450058793525	36.998	0.12016	37	36.952	37.072	0.0022507	78	88	1.5723488	0.051240087	1.5708294	319.1405	0	10.400238						330	6	4	NaN	NaN	NaN	0.032689	1	9287	9287		55.592	5.6303	1	42409			14747	157	8559	8734	11643	11643					0.12716961176613495
LPDQPPYHL	9	Unmodified	_LPDQPPYHL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2796490402001	2	540.279649	1078.54475	2.0009	0.0010811	-1.0531	-0.00056896	0.94784	0.0005121	540.2791468933806	21.513	0.45767	21.513	21.296	21.754	0	1290	118	0.84311575	0.07184529	0.84311575	342.01517	0	29.14447						924	20	3	NaN	NaN	NaN	0.010404	1	11916	11916		91.563	44.427	1	271220			14748	3922	8560	8735	11644	11644					0.00861456443226416
LPDQPPYHL	9	Unmodified	_LPDQPPYHL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2796490402001	2	540.279649	1078.54475	1.815	0.00098062	-1.1842	-0.00063979	0.63082	0.00034082	540.2790382793065	21.513	0.31305	21.499	21.354	21.667	-0.014006	1293	115	0.84127116	0.07001442	0.8397517	341.2669	0	28.401794						673	14	3	NaN	NaN	NaN	0.024359	1	11610	11610		66.481	26.327	1	251980			14749	3922	8560	8735	11645	11645					0.00861456443226416
LPDQSFLWNVF	11	Unmodified	_LPDQSFLWNVF_					0	0	0		nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6;ENST00000507841.5_1_5:1632852-1634017:-|nuORF;nc|ENSG00000249915|O75340-3|PDCD6;ENST00000507505.5_1_5:1599907-1634017:-|nuORF;ENST00000507290.5_1_5:1632852-1634017:-|nuORF;ENST00000515587.1_1_5:271739-272994:+|nuORF	nc|ENSG00000249915|O75340-2|PDCD6	nc|ENSG00000249915|O75340-2|PDCD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3455202674501	2	683.34552	1364.67649	1.0988	0.00075083	-4.0461	-0.0027649	-2.9473	-0.002014	683.8440942491183	37.65	0.072243	37.65	37.626	37.699	0	1083	40	0.9699114	0.02379638	0.9699114	392.40848	0	9.627563						65	4	2	NaN	NaN	NaN	0.67738	1	19741	19741		8.9416	2.6914	1	4190.1			14750	6102	8561	8736	11646	11646					0.008736417403270025
LPDQTLPIL	9	Unmodified	_LPDQTLPIL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.5928237960003	1	1009.59282	1008.58555	1.295	0.0013074	-0.47166	-0.00047619	0.82331	0.00083121	1009.5923814903753	30.849	0.21715	30.849	30.753	30.97	0	162	85	1.5228153	0.049622893	1.5228153	309.14398	0	10.073853						467	10	4	NaN	NaN	NaN	0.010878	1	8933	8933		90.252	23.097	1	97095			14751	2884	8562	8737	11647	11647					0.08159797762868948
LPDQTLPIL	9	Unmodified	_LPDQTLPIL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.3000501313001	2	505.30005	1008.58555	1.024	0.00051744	-3.9143	-0.0019779	-2.8903	-0.0014604	505.2989286099973	30.824	0.12061	30.818	30.746	30.866	-0.0057564	1299	49	0.8375814	0.02951479	0.83606195	340.0672	0	11.983337						127	6	2	NaN	NaN	NaN	0.070055	1	8760	8760		40.154	4.8573	1	11030			14752	2884	8562	8737	11648	11648					0.08159797762868948
LPDQTLPIL	9	Unmodified						0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1009.59282	1008.58555	1.5	0.0015143	-0.98226	-0.00099168	0.5177	0.00052266	1009.5917024001863	30.824	0.24133	30.818	30.722	30.963	-0.0057564	159	76	1.5245869	0.044294357	1.5230675	309.50363		8.992126	-0.015499	-0.00028271	0.00012607	NaN	90.252	445	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94841			14753	2884	8562	8737							0.08159797762868948
LPDSIESAL	9	Unmodified	_LPDSIESAL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4935036819	1	944.493504	943.486227	2.288	0.002161	-0.98825	-0.00093339	1.2998	0.0012276	944.4924755470554	26.288	0.31374	26.288	26.167	26.481	0	321	103	1.4286518	0.06060934	1.4286518	290.29773	0	12.315643						633	14	4	NaN	NaN	NaN	0.028349	1	6906	6906		61.271	8.6472	1	162710			14754	1089	8563	8738	11649	11649					0.012223550780959158
LPDSIESAL	9	Unmodified	_LPDSIESAL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4935036819	1	944.493504	943.486227	2.0986	0.0019821	-1.2294	-0.0011611	0.86923	0.00082098	944.4926925163259	26.311	0.3378	26.3	26.204	26.542	-0.011135	318	109	1.4304334	0.06417453	1.428914	290.65973	0	13.04007						689	15	4	NaN	NaN	NaN	0.021105	1	6769	6769		70.6	0	1	162120			14755	1089	8563	8738	11650	11650					0.012223550780959158
LPDSLLVVL	9	Unmodified	_LPDSLLVVL_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.6026602008002	1	968.60266	967.595384	1.1321	0.0010965	1.016	0.00098411	2.1481	0.0020806	968.6025989921383	35.578	0.14464	35.578	35.53	35.675	0	204	64	1.4979934	0.037266493	1.4979934	304.2786	0	7.5697327						176	7	3	NaN	NaN	NaN	0.078597	1	7550	7550		38.918	13.957	1	22101			14756	4977	8564	8739	11651	11651					0.11028985768246002
LPDSLPLDTL	10	Unmodified	_LPDSLPLDTL_					0	0	0		ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5932177265	1	1083.59322	1082.58594	1.3838	0.0014994	-3.6351	-0.003939	-2.2513	-0.0024395	1083.5917774359368	31.041	0.072418	31.036	31.012	31.084	-0.0050716	87	82	1.5670487	0.04773152	1.5655292	317.83032	0	9.680969						140	4	2	NaN	NaN	NaN	0.068403	1	11792	11792		50.315	7.9975	1	12370			14757	4524	8565	8740	11652	11652					0.04795172692047345
LPDSSKLLS	9	Unmodified	_LPDSSKLLS_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1;nc|ENSG00000111885|P33908-2|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.2740323460501	2	480.274032	958.533512	1.8264	0.00087719	-1.5554	-0.00074701	0.27105	0.00013018	480.27335453312315	19.948	0.12032	19.934	19.861	19.982	-0.014141	1341	49	0.8117308	0.029572368	0.81021136	329.80307	0	12.015137						110	6	2	NaN	NaN	NaN	0.19268	1	7162	7162		25.801	0	1	10904			14758	1844	8566	8741	11653	11653					0.052586343491157095
LPDSSYYSV	9	Unmodified	_LPDSSYYSV_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant;IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4727682398	1	1030.47277	1029.46549	1.9695	0.0020295	2.2377	0.0023059	4.2072	0.0043354	1030.475163172476	22.67	0.072361	22.67	22.645	22.718	0	180	49	1.5121819	0.028358936	1.5121819	306.9013	0	5.755493						72	4	2	NaN	NaN	NaN	0.23112	1	9743	9743		23.334	8.159	1	4600.8			14759	2831	8567	8742	11654	11654					-0.048062353015666304
LPDSVNQLL	9	Unmodified	_LPDSVNQLL_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7794818647	2	499.779482	997.544411	1.7719	0.00088554	-2.6843	-0.0013416	-0.91243	-0.00045601	499.77866289005823	27.977	0.096504	27.977	27.929	28.026	0	1299	73	0.8375814	0.044296205	0.8375814	340.11786	0	17.987427						206	5	3	NaN	NaN	NaN	0.055351	1	8488	8488		44.638	5.1797	1	32471			14760	2234	8568	8743	11655	11655					0.04554036723379795
LPDSVNQLL	9	Unmodified	_LPDSVNQLL_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.7794818647	2	499.779482	997.544411	0.84804	0.00042383	-1.5846	-0.00079195	-0.73655	-0.00036811	499.77869311177733	27.977	0.14479	27.968	27.943	28.088	-0.0089798	1296	82	0.8394264	0.04984671	0.83790696	340.86703	0	20.241333						169	7	2	NaN	NaN	NaN	0.036546	1	8311	8311		52.624	13.165	1	32063			14761	2234	8568	8743	11656	11656					0.04554036723379795
LPDSVVSIL	9	Unmodified	_LPDSVVSIL_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246303001	1	942.550625	941.543348	0.8083	0.00076186	0.70333	0.00066292	1.5116	0.0014248	942.5516040080531	31.115	0.14483	31.115	31.066	31.211	0	312	67	1.433996	0.03918028	1.433996	291.39227	0	7.961548						187	7	3	NaN	NaN	NaN	0.032764	1	6854	6854		55.494	8.3578	1	22935			14762	5063	8569	8744	11657	11657					0.070238223544834
LPDSVVSIL	9	Unmodified	_LPDSVVSIL_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303001	1	942.550625	941.543348	1.3967	0.0013164	-0.52621	-0.00049598	0.87046	0.00082045	942.5507900511624	31.089	0.12067	31.084	31.06	31.181	-0.0050716	312	58	1.433996	0.033839345	1.4324765	291.3923	0	6.876251						174	6	3	NaN	NaN	NaN	0.062072	1	6715	6715		41.785	12.186	1	22342			14763	5063	8569	8744	11658	11658					0.070238223544834
LPDTDVLYM	9	Unmodified	_LPDTDVLYM_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5125245645	1	1066.51252	1065.50525	0.99459	0.0010607	-0.069625	-7.4256E-05	0.92497	0.00098649	1066.5127852960175	28.918	0.26545	28.909	28.789	29.054	-0.0083504	141	82	1.5352125	0.04781258	1.5336931	311.43607	0	9.699341						238	12	2	NaN	NaN	NaN	0.03623	1	11099	11099		52.758	25.462	1	23134			14764	965	8570	8745	11659	11659					-0.02488431622509779
LPDTDVLYM	9	Oxidation (M)	_LPDTDVLYM(Oxidation (M))_		LPDTDVLYM(1)		LPDTDVLYM(53)	0	0	1		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5074391865999	1	1082.50744	1081.50016	1.5566	0.001685	-0.72431	-0.00078407	0.83226	0.00090093	1082.5070018682013	24.695	0.1688	24.682	24.586	24.755	-0.012392	135	46	1.5387528	0.026545644	1.5372335	312.09525	0	5.384094						128	8	2	NaN	NaN	NaN	0.03623	1	11725	11725		52.758	30.632	1	10229			14765	965	8570	8746	11660	11660		102			-0.0373273548511861
LPDTIDQML	9	Unmodified	_LPDTIDQML_					0	0	0		ENST00000448810.5_1_5:131726469-131729504:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5234236018	1	1045.52342	1044.51615	1.1877	0.0012418	1.2577	0.001315	2.4454	0.0025567	1046.5243963867574	31.258	0.26545	31.253	31.205	31.47	-0.0050716	171	112	1.5174994	0.06557655	1.51598	307.92184	0	13.3063965						560	12	3	NaN	NaN	NaN	0.12328	1	10189	10189		32.453	7.4917	1	82583			14766	5697	8571	8747	11661	11661					-0.004330292482109144
LPDTILEKL	9	Unmodified	_LPDTILEKL_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.31315750655	2	521.313158	1040.61176	2.191	0.0011422	-0.39307	-0.00020491	1.7979	0.00093726	521.3127555942033	26.263	0.19306	26.263	26.215	26.408	0	1263	79	0.85970795	0.04789424	0.85970795	348.9062	0	19.43753						391	9	4	NaN	NaN	NaN	0.002766	1	10253	10253		108.71	2.1536	1	100920			14767	6027	8572	8748	11662	11662					0.09308066934318049
LPDTILEKL	9	Unmodified	_LPDTILEKL_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.31315750655	2	521.313158	1040.61176	1.8487	0.00096373	-1.3373	-0.00069717	0.51132	0.00026656	521.3119639019269	26.287	0.28953	26.276	26.156	26.445	-0.011137	1263	82	0.85970795	0.04973364	0.8581885	348.9062	0	20.184021						461	13	4	NaN	NaN	NaN	0.011167	1	10040	10040		89.374	25.643	1	100280			14768	6027	8572	8748	11663	11663					0.09308066934318049
LPDTTGEIVL	10	Unmodified	_LPDTTGEIVL_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5775676623	1	1057.57757	1056.57029	1.9416	0.0020534	-1.3989	-0.0014794	0.54273	0.00057398	1057.5766131906275	27.736	0.16892	27.736	27.688	27.857	0	144	58	1.533442	0.033638716	1.533442	311.11057	0	6.8247375						168	8	3	NaN	NaN	NaN	0.12649	1	10950	10950		42.318	21.804	1	15379			14769	8024	8573	8749	11664	11664					0.0442688617499698
LPDTTGEIVL	10	Unmodified	_LPDTTGEIVL_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5775676623	1	1057.57757	1056.57029	1.3309	0.0014075	-0.8284	-0.0008761	0.50245	0.00053138	1057.5764879307415	27.735	0.12064	27.726	27.677	27.798	-0.009552	144	49	1.533442	0.028328896	1.5319226	311.11057	0	5.747467						156	6	3	NaN	NaN	NaN	0.070973	1	10724	10724		49.961	12.659	1	14505			14770	8024	8573	8749	11665	11665					0.0442688617499698
LPDTTLPR	8	Unmodified	_LPDTTLPR_					0	0	0			REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.76109214630003	2	456.761092	911.507631	1.0021	0.00045771	-1.5531	-0.00070941	-0.55105	-0.0002517	456.76050383068787	20.935	0.4094	20.935	20.838	21.248	0	1344	55	0.8098828	0.033265352	0.8098828	329.29214	0	13.525421						383	18	3	NaN	NaN	NaN	0.67765	1	6260	6260		20.449	2.6497	1	94208	+		14771	12731	8574	8750	11666	11666					0.04833784897482474
LPDTTLPR	8	Unmodified						0	0	0			REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	456.761092	911.507631	1.0021	0.00045771	-1.5531	-0.00070941	-0.55105	-0.0002517	456.76050383068787	20.935	0.4094	20.935	20.838	21.248	0	1344	55	0.8098828	0.033265352	0.8098828	329.29214		13.525421	-0.0050762	-0.00037464	0.00075972	NaN	20.449	383	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94208	+		14772	12731	8574	8750							0.04833784897482474
LPDTTLPR	8	Unmodified						0	0	0			REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	REV__ENST00000549319.2_1_1:221052998-221053868:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	456.761092	911.507631	0.89119	0.00040706	-0.7002	-0.00031983	0.19098	8.7234E-05	456.76062067993	20.959	0.33707	20.945	20.825	21.162	-0.014088	1344	58	0.8098828	0.03511536	0.8083634	329.29214		14.277618	0.0050762	0.00040453	-0.00075972	NaN	20.449	425	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98177	+		14773	12731	8574	8750							0.04833784897482474
LPDTTSIFAL	10	Unmodified	_LPDTTSIFAL_					0	0	0		ENST00000428400.5_1_X:47086613-47088270:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	ENST00000428400.5_1_X:47086613-47088270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5826530402	1	1077.58265	1076.57538	1.5316	0.0016504	-11.227	-0.012098	-9.6958	-0.010448	1077.5703834466794	32.851	0.26542	32.848	32.703	32.969	-0.0031052	84	121	1.5688156	0.070709705	1.5672961	318.21106	0	14.342438						507	12	2	NaN	NaN	NaN	0.22448	1	11522	11522		33.425	5.6365	1	79067			14774	1370	8575	8751	11667	11667					0.04015190037625871
LPDVAPEELEA	11	Unmodified	_LPDVAPEELEA_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.79806854835	2	591.798069	1181.58158	1.2032	0.00071204	1.9497	0.0011538	3.1529	0.0018659	591.7993735389643	21.079	0.12042	21.079	21.055	21.175	0	1155	37	0.92591566	0.022028744	0.92591566	375.1901	0	8.92627						117	6	3	NaN	NaN	NaN	0.59385	1	15880	15880		14.425	3.2547	1	14021			14775	439	8576	8752	11668	11668					-0.0019433652153111325
LPDVAPEELEA	11	Unmodified						0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.798069	1181.58158	0.95288	0.00056391	3.0837	0.0018249	4.0366	0.0023889	591.8003040939475	21.224	0.1685	21.21	21.162	21.33	-0.014004	1158	61	0.92408	0.036714554	0.9225606	374.4463		14.877106	0.065387	0.00080902	-0.0016775	NaN	14.425	161	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13585			14776	439	8576	8752							-0.0019433652153111325
LPDVDLDL	8	Unmodified	_LPDVDLDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.4720399583001	1	899.47204	898.464763	1.999	0.001798	-0.042448	-3.818E-05	1.9566	0.0017599	899.4714430119762	29.763	0.33785	29.763	29.667	30.004	0	351	109	1.4108255	0.06425655	1.4108255	286.88208	0	13.066162						538	15	3	NaN	NaN	NaN	0.076044	1	6039	6039		70.6	0	1	113810			14777	2444	8577	8753	11669	11669					0.01146970049387619
LPDVDLDL	8	Unmodified						0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	899.47204	898.464763	1.4593	0.0013126	-0.37547	-0.00033772	1.0838	0.00097488	899.4711467927947	29.762	0.2654	29.755	29.683	29.948	-0.0070667	351	97	1.4108255	0.057104826	1.409306	286.88208		11.611877	-0.0039562	-0.00013485	-0.00075972	NaN	70.6	511	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121700			14778	2444	8577	8753							0.01146970049387619
LPDVFGLVVL	10	Unmodified	_LPDVFGLVVL_					0	0	0		ENST00000492535.1_1_22:32889009-32894514:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.3260679165502	2	536.326068	1070.63758	1.1766	0.00063104	-3.2913	-0.0017652	-2.1147	-0.0011341	536.3245820478741	40.464	0.09621	40.464	40.416	40.512	0	1227	31	0.88180584	0.018402934	0.88180584	357.74335	0	7.465973						58	5	2	NaN	NaN	NaN	0.64158	1	11602	11602		12.049	2.3027	1	4507.5			14779	1208	8578	8754	11670	11670					0.10508961176628873
LPDVFGLVVL	10	Unmodified	_LPDVFGLVVL_					0	0	0		ENST00000492535.1_1_22:32889009-32894514:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.6448593665002	1	1071.64486	1070.63758	1.1499	0.0012323	0.18537	0.00019865	1.3353	0.001431	1071.6453264900083	40.464	0.16832	40.464	40.416	40.585	0	93	79	1.5635144	0.04594183	1.5635144	317.158	0	9.319275						356	8	3	NaN	NaN	NaN	0.051632	1	11604	11604		52.624	29.538	1	53615			14780	1208	8578	8754	11671	11671					0.10508961176628873
LPDVFGLVVL	10	Unmodified	_LPDVFGLVVL_					0	0	0		ENST00000492535.1_1_22:32889009-32894514:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.3260679165502	2	536.326068	1070.63758	1.1767	0.00063112	-3.5661	-0.0019126	-2.3894	-0.0012815	536.324092335638	40.414	0.07206	40.421	40.421	40.493	0.0067558	1227	28	0.88180584	0.016561747	0.8802864	357.74335	0	6.7190247						57	4	2	NaN	NaN	NaN	0.5917	1	11305	11305		15.463	7.9223	1	4780.1			14781	1208	8578	8754	11672	11672					0.10508961176628873
LPDVFGLVVL	10	Unmodified	_LPDVFGLVVL_					0	0	0		ENST00000492535.1_1_22:32889009-32894514:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	ENST00000492535.1_1_22:32889009-32894514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.6448593665002	1	1071.64486	1070.63758	1.017	0.0010898	0.60388	0.00064714	1.6208	0.001737	1071.6454552465916	40.438	0.16825	40.445	40.397	40.565	0.0067558	90	73	1.5652816	0.04240334	1.5637622	317.51648	0	8.601501						357	8	4	NaN	NaN	NaN	0.040041	1	11306	11306		55.413	29.298	1	51859			14782	1208	8578	8754	11673	11673					0.10508961176628873
LPDVLIIHL	9	Unmodified	_LPDVLIIHL_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.8262350920502	2	516.826235	1031.63792	1.0239	0.00052919	-1.1438	-0.00059115	-0.1199	-6.1966E-05	516.8256133054397	31.501	0.096523	31.501	31.452	31.549	0	1227	43	0.88180584	0.02576691	0.88180584	357.91507	0	10.458496						109	5	3	NaN	NaN	NaN	0.03623	1	9868	9868		52.758	8.4559	1	11888			14783	1439	8579	8755	11674	11674					0.1233638089647684
LPDVLIIHL	9	Unmodified	_LPDVLIIHL_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.8262350920502	2	516.826235	1031.63792	0.67512	0.00034892	-0.38113	-0.00019698	0.29399	0.00015194	516.8258509035459	31.5	0.14481	31.495	31.447	31.592	-0.0044174	1224	40	0.883646	0.023922563	0.88212657	358.662	0	9.7099						115	7	3	NaN	NaN	NaN	0.29681	1	9661	9661		19.118	12.255	1	11515			14784	1439	8579	8755	11675	11675					0.1233638089647684
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2714896571001	2	524.27149	1046.52843	1.3493	0.00070738	-2.0727	-0.0010867	-0.72343	-0.00037928	524.2704885510498	28.991	0.19311	28.991	28.918	29.112	0	1284	73	0.8468043	0.04425305	0.8468043	343.64395	0	17.958466						425	9	4	NaN	NaN	NaN	0.032826	1	10481	10481		55.413	30.851	1	60288			14785	1406	8580	8756	11676	11676					0.007023304865015234
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.5357028476	1	1047.5357	1046.52843	2.1056	0.0022057	-0.64885	-0.0006797	1.4568	0.001526	1047.5351905114917	28.991	0.38615	28.991	28.894	29.28	0	147	118	1.5316714	0.06911385	1.5316714	310.78976	0	14.023834						704	17	4	NaN	NaN	NaN	0.010878	1	10484	10484		90.252	45.613	1	135250			14786	1406	8580	8756	11677	11677					0.007023304865015234
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2714896571001	2	524.27149	1046.52843	1.1529	0.00060441	-1.6203	-0.00084947	-0.46742	-0.00024505	524.2704243201853	29.014	0.36203	29.007	28.838	29.2	-0.0077209	1287	79	0.8449601	0.047935665	0.84344065	342.89557	0	19.452911						578	16	5	NaN	NaN	NaN	0.10363	1	10273	10273		35.296	1.5982	1	83366			14787	1406	8580	8756	11678	11678					0.007023304865015234
LPDVSLQEF	9	Unmodified	_LPDVSLQEF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5357028476	1	1047.5357	1046.52843	1.4927	0.0015637	-0.29236	-0.00030626	1.2004	0.0012574	1047.535283867923	28.99	0.33787	28.982	28.838	29.175	-0.0077229	144	97	1.533442	0.056687713	1.5319226	311.14902	0	11.502472						612	15	4	NaN	NaN	NaN	0.030545	1	10278	10278		58.398	32.283	1	117050			14788	1406	8580	8756	11679	11679					0.007023304865015234
LPDVVLQEL	9	Unmodified	_LPDVVLQEL_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.29750744235	2	513.297507	1024.58046	1.5091	0.00077464	-1.9959	-0.0010245	-0.48675	-0.00024985	513.2969457061814	30.632	0.072433	30.632	30.584	30.656	0	1290	37	0.84311575	0.022133768	0.84311575	342.24225	0	8.98465						74	4	2	NaN	NaN	NaN	0.35794	1	9572	9572		15.463	3.414	1	8386.4			14789	4256	8581	8757	11680	11680					0.0691549390023738
LPDVVLQEL	9	Unmodified						0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.297507	1024.58046	1.0872	0.00055804	-2.4674	-0.0012665	-1.3803	-0.00070848	513.2961855227384	30.607	0.072392	30.601	30.577	30.649	-0.0057545	1287	37	0.8449601	0.022131324	0.84344065	342.99094		8.983673	-0.015473	-0.00010934	0.00016247	NaN	15.463	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6900.5			14790	4256	8581	8757							0.0691549390023738
LPDWPEVYF	9	Unmodified	_LPDWPEVYF_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.28185737815	2	583.281857	1164.54916	1.799	0.0010493	1.2983	0.00075727	3.0973	0.0018066	583.78282177876	34.662	0.1688	34.662	34.589	34.758	0	1212	46	0.8910048	0.02759105	0.8910048	361.1048	0	11.182037						143	8	3	NaN	NaN	NaN	0.12945	1	15294	15294		31.561	1.9627	1	12417			14791	3842	8582	8758	11681	11681					-0.02653079133870051
LPDWPEVYF	9	Unmodified	_LPDWPEVYF_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.28185737815	2	583.281857	1164.54916	1.3511	0.00078809	-0.89134	-0.0005199	0.4598	0.00026819	583.7837766992903	34.66	0.21694	34.66	34.563	34.78	-0.00064468	1209	70	0.892844	0.042297065	0.8913246	361.85022	0	17.14206						231	10	3	NaN	NaN	NaN	0.39244	1	14767	14767		14.042	0.57854	1	18968			14792	3842	8582	8758	11682	11682					-0.02653079133870051
LPDYTSGVSF	10	Unmodified	_LPDYTSGVSF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5149674054999	1	1085.51497	1084.50769	1.7796	0.0019318	-0.3467	-0.00037635	1.4329	0.0015555	1085.5142473089734	26.553	0.1448	26.553	26.505	26.65	0	114	58	1.5511382	0.03360665	1.5511382	314.59628	0	6.815979						192	7	3	NaN	NaN	NaN	0.088985	1	12157	12157		47.482	16.871	1	18606			14793	4564	8583	8759	11683	11683					-0.03118259893199138
LPDYTSGVSF	10	Unmodified	_LPDYTSGVSF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5149674054999	1	1085.51497	1084.50769	1.2211	0.0013255	0.67757	0.00073551	1.8987	0.002061	1085.5157684812773	26.553	0.12066	26.542	26.518	26.639	-0.010645	114	61	1.5511382	0.03537357	1.5496187	314.59628	0	7.1743164						180	6	3	NaN	NaN	NaN	0.019898	1	11842	11842		63.731	26.428	1	19551			14794	4564	8583	8759	11684	11684					-0.03118259893199138
LPDYTSPVV	9	Unmodified	_LPDYTSPVV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.514239124	1	990.514239	989.506963	1.7807	0.0017639	-0.55483	-0.00054957	1.2259	0.0012143	990.513887028528	24.55	0.072279	24.55	24.526	24.598	0	213	88	1.4926696	0.05149603	1.4926696	303.10294	0	10.456848						162	4	2	NaN	NaN	NaN	0.055351	1	8192	8192		44.638	5.1797	1	14984			14795	5430	8584	8760	11685	11685					0.011789454577638026
LPDYTSPVV	9	Unmodified	_LPDYTSPVV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.514239124	1	990.514239	989.506963	1.5737	0.0015587	1.0701	0.0010599	2.6437	0.0026186	990.5154011542282	24.55	0.096443	24.538	24.514	24.61	-0.012394	210	76	1.4944444	0.044388413	1.4929249	303.46332	0	9.01355						144	5	3	NaN	NaN	NaN	0.036546	1	8026	8026		52.624	5.4883	1	12595			14796	5430	8584	8760	11686	11686					0.011789454577638026
LPDYTSPVVL	10	Unmodified	_LPDYTSPVVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.3027897855001	2	552.30279	1102.59103	1.1921	0.0006584	-1.6209	-0.00089525	-0.42884	-0.00023685	552.3013293126176	28.87	0.2172	28.87	28.75	28.967	0	1254	55	0.8652351	0.033150375	0.8652351	350.89148	0	13.44397						263	10	4	NaN	NaN	NaN	0.47601	1	12955	12955		20.449	8.4	1	28474			14797	5430	8585	8761	11687	11687					0.043834765546762355
LPDYTSPVVL	10	Unmodified	_LPDYTSPVVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5983031044	1	1103.5983	1102.59103	1.6459	0.0018164	1.297	0.0014313	2.9429	0.0032478	1103.60013475733	28.846	0.2172	28.846	28.774	28.991	0	63	97	1.5811787	0.056537867	1.5811787	320.6229	0	11.4644165						424	10	4	NaN	NaN	NaN	0.31086	1	12958	12958		27.296	9.4972	1	48098			14798	5430	8585	8761	11688	11688					0.043834765546762355
LPDYTSPVVL	10	Unmodified	_LPDYTSPVVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.3027897855001	2	552.30279	1102.59103	1.0763	0.00059445	-1.2756	-0.00070453	-0.1993	-0.00011007	552.3016949518952	28.845	0.19308	28.837	28.765	28.958	-0.0083504	1251	64	0.8670771	0.038664997	0.8655577	351.6385	0	15.680359						266	9	4	NaN	NaN	NaN	0.44258	1	12617	12617		21.835	0	1	33163			14799	5430	8585	8761	11689	11689					0.043834765546762355
LPDYTSPVVL	10	Unmodified						0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1103.5983	1102.59103	1.3623	0.0015034	1.0028	0.0011067	2.3651	0.0026101	1103.5994881884233	28.869	0.14483	28.861	28.789	28.933	-0.0083504	63	97	1.5811787	0.056537867	1.5796592	320.6229		11.4644165	0.0075062	-0.00017769	-0.00075972	NaN	27.296	435	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48541			14800	5430	8585	8761							0.043834765546762355
LPDYYDTPL	9	Unmodified	_LPDYYDTPL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.5197184324	1	1096.51972	1095.51244	1.585	0.001738	-1.5561	-0.0017063	0.028971	3.1768E-05	1096.5177247421693	26.963	0.19312	26.952	26.904	27.097	-0.010645	108	106	1.5546752	0.061926723	1.5531558	315.27386	0	12.558197						467	9	4	NaN	NaN	NaN	0.025843	1	12313	12313		64.55	34.952	1	80662			14801	926	8586	8762	11690	11690					-0.03149375750422223
LPDYYLVTV	9	Unmodified	_LPDYYLVTV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5768393807998	1	1082.57684	1081.56956	1.2993	0.0014066	-4.7242	-0.0051143	-3.4249	-0.0037078	1082.573484599498	30.439	0.14479	30.439	30.415	30.56	0	93	85	1.5635144	0.0494864	1.5635144	317.11722	0	10.036957						179	7	2	NaN	NaN	NaN	0.10956	1	12056	12056		34.439	16.64	1	31757			14802	5685	8587	8763	11691	11691					0.03204091525935837
LPDYYPNFL	9	Unmodified	_LPDYYPNFL_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.28185737815	2	571.281857	1140.54916	1.5808	0.00090308	-1.5473	-0.00088393	0.033533	1.9157E-05	571.2819810499814	40.27	0.072071	40.276	40.228	40.3	0.0060463	1185	43	0.90755045	0.02573073	0.906031	367.901	0	10.430664						60	4	2	NaN	NaN	NaN	0.61413	1	13996	13996		4.9097	0.94122	1	3121.1	+		14803	8714	8588	8764	11692	11692					-0.015490791338606869
LPEAEMFSL	9	Oxidation (M)	_LPEAEM(Oxidation (M))FSL_		LPEAEM(1)FSL		LPEAEM(42)FSL	0	0	1		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4968745003	1	1052.49687	1051.4896	1.8891	0.0019882	-1.9619	-0.0020649	-0.072856	-7.6681E-05	1052.4950854628514	27.133	0.12068	27.133	27.084	27.205	0	174	61	1.5157272	0.035452366	1.5157272	307.53564	0	7.1931763						161	6	4	NaN	NaN	NaN	0.060816	1	10680	10680		42.318	20.483	1	15982			14804	3220	8589	8765	11693	11693		357			-0.0340871813953072
LPEAEMFSL	9	Oxidation (M)	_LPEAEM(Oxidation (M))FSL_		LPEAEM(1)FSL		LPEAEM(58)FSL	0	0	1		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4968745003	1	1052.49687	1051.4896	1.3172	0.0013864	-0.83345	-0.0008772	0.48376	0.00050916	1052.4967753879266	27.156	0.096518	27.146	27.122	27.218	-0.010126	174	58	1.5157272	0.033678055	1.5142077	307.53564	0	6.83313						180	5	3	NaN	NaN	NaN	0.030669	1	10463	10463		58.235	18.777	1	19916			14805	3220	8589	8765	11694	11694		357			-0.0340871813953072
LPEAEMFSL	9	Unmodified	_LPEAEMFSL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5019598782	1	1036.50196	1035.49468	1.0502	0.0010886	3.5092	0.0036373	4.5594	0.0047259	1036.5076406038859	30.727	0.1448	30.722	30.601	30.746	-0.0057545	183	109	1.510409	0.06380761	1.5088896	306.51788	0	12.948914						249	7	2	NaN	NaN	NaN	0.12328	1	9800	9800		32.453	12.004	1	41508			14806	3220	8589	8766	11695	11695					-0.021644142769218888
LPEAFPITL	9	Unmodified	_LPEAFPITL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5713600724001	1	1000.57136	999.564084	1.2443	0.001245	1.9392	0.0019403	3.1835	0.0031853	1000.5731082355067	33.238	0.12067	33.238	33.19	33.311	0	174	103	1.5157272	0.060301065	1.5157272	307.74243	0	12.243103						377	6	3	NaN	NaN	NaN	0.01452	1	8584	8584		79.199	26.575	1	57368			14807	4974	8590	8767	11696	11696					0.06428412734146605
LPEAFPITL	9	Unmodified	_LPEAFPITL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.78931826950003	2	500.789318	999.564084	0.90159	0.00045151	-5.626	-0.0028174	-4.7244	-0.0023659	500.78685652646635	33.237	0.072411	33.235	33.21	33.283	-0.0024757	1311	40	0.83019954	0.024000287	0.8286801	337.11102	0	9.745575						69	4	2	NaN	NaN	NaN	0.49672	1	8403	8403		9.746	0	1	6394			14808	4974	8590	8767	11697	11697					0.06428412734146605
LPEAFPITL	9	Unmodified	_LPEAFPITL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5713600724001	1	1000.57136	999.564084	1.0872	0.0010878	1.6182	0.0016191	2.7054	0.002707	1000.5732741536151	33.237	0.12067	33.235	33.186	33.307	-0.0024757	171	103	1.5174994	0.06029463	1.51598	308.1023	0	12.241791						416	6	4	NaN	NaN	NaN	0.0062755	1	8405	8405		99.986	41.75	1	57928			14809	4974	8590	8767	11698	11698					0.06428412734146605
LPEAPELSL	9	Unmodified	_LPEAPELSL_					0	0	0		ENST00000468045.5_1_2:27353966-27354122:-|nuORF	ENST00000468045.5_1_2:27353966-27354122:-|nuORF	ENST00000468045.5_1_2:27353966-27354122:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5298891882002	1	968.529889	967.522613	1.1634	0.0011268	-0.96929	-0.00093879	0.19414	0.00018803	968.5287704502717	35.554	0.12065	35.554	35.506	35.627	0	258	106	1.4660252	0.062256098	1.4660252	297.7854	0	12.645721						341	6	3	NaN	NaN	NaN	0.29681	1	7543	7543		19.118	2.7017	1	38926			14810	7126	8591	8768	11699	11699					0.03755231974821527
LPEDEGHTRTL	11	Unmodified	_LPEDEGHTRTL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.2140862285333	3	423.214086	1266.62043	1.5802	0.00066875	-1.5403	-0.00065186	0.039913	1.6892E-05	423.213579559556	14.165	0.12011	14.165	14.141	14.261	0	1404	61	0.77288127	0.03706175	0.77288127	469.40042	0	22.509033						116	6	2	NaN	NaN	NaN	0.072119	1	18151	18151		44.225	25.301	1	12175			14811	4453	8592	8769	11700	11700					-0.002216111671486942
LPEDEGHTRTL	11	Unmodified	_LPEDEGHTRTL_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.2140862285333	3	423.214086	1266.62043	1.0726	0.00045393	-1.6052	-0.00067935	-0.53265	-0.00022543	423.21372459034427	14.189	0.11977	14.177	14.154	14.273	-0.011219	1404	34	0.77288127	0.02037406	0.7713618	469.40042	0	12.373932						96	6	2	NaN	NaN	NaN	0.57786	1	17345	17345		15.475	7.5339	1	11867			14812	4453	8592	8769	11701	11701					-0.002216111671486942
LPEDFAVVF	9	Unmodified	_LPEDFAVVF_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;ENST00000463038.1_1_3:132241830-132242644:+|nuORF	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5349745661	1	1036.53497	1035.5277	1.2102	0.0012544	-0.02297	-2.381E-05	1.1872	0.0012306	1036.53509042667	33.238	0.33786	33.238	33.19	33.528	0	171	139	1.5174994	0.0815233	1.5174994	307.9567	0	16.544098						684	15	4	NaN	NaN	NaN	0.030391	1	10014	10014		58.599	30.81	1	166230			14813	266	8593	8770	11702	11702					0.011355358374203206
LPEDFAVVF	9	Unmodified						0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;ENST00000463038.1_1_3:132241830-132242644:+|nuORF	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1036.53497	1035.5277	1.0275	0.0010651	0.28648	0.00029694	1.314	0.001362	1036.5353122520994	33.261	0.24131	33.259	33.162	33.403	-0.0024757	168	139	1.5192716	0.081506014	1.5177522	308.3163		16.540588	0.010172	0.00015742	0.00012636	NaN	58.599	643	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157680			14814	266	8593	8770							0.011355358374203206
LPEDFMESL	9	Unmodified	_LPEDFMESL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4917891224	1	1080.49179	1079.48451	1.1303	0.0012213	1.9631	0.0021211	3.0934	0.0033424	1080.4933927008396	30.511	0.16891	30.511	30.439	30.608	0	117	73	1.5493695	0.042466283	1.5493695	314.25592	0	8.613373						221	8	2	NaN	NaN	NaN	0.12328	1	11941	11941		32.453	6.3378	1	26666			14815	2278	8594	8771	11703	11703					-0.052050220021556015
LPEDFMESL	9	Unmodified	_LPEDFMESL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.4917891224	1	1080.49179	1079.48451	1.4026	0.0015155	1.5353	0.0016589	2.9379	0.0031743	1080.4926680609951	30.51	0.19303	30.505	30.408	30.601	-0.0057545	120	79	1.5476005	0.046000242	1.5460811	313.89713	0	9.330139						228	9	2	NaN	NaN	NaN	0.032764	1	11639	11639		55.494	25.895	1	26607			14816	2278	8594	8771	11704	11704					-0.052050220021556015
LPEDFSDAL	9	Unmodified	_LPEDFSDAL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4727682398001	1	1006.47277	1005.46549	1.6849	0.0016958	0.91188	0.00091778	2.5968	0.0026136	1006.4736375071104	26.964	0.33781	26.964	26.891	27.229	0	273	127	1.4571344	0.0746479	1.4571344	295.82257	0	15.154785						733	15	4	NaN	NaN	NaN	0.042816	1	8784	8784		49.961	17.509	1	139370			14817	3097	8595	8772	11705	11705					-0.03702235301557266
LPEDFSDAL	9	Unmodified	_LPEDFSDAL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4727682398001	1	1006.47277	1005.46549	1.5457	0.0015557	0.65963	0.0006639	2.2054	0.0022196	1006.4734529546425	26.987	0.28964	26.977	26.905	27.194	-0.010126	270	112	1.458913	0.06575763	1.4573935	296.18365	0	13.349915						727	13	4	NaN	NaN	NaN	0.028349	1	8612	8612		61.271	11.438	1	137520			14818	3097	8595	8772	11706	11706					-0.03702235301557266
LPEDSYVTWL	10	Unmodified	_LPEDSYVTWL_					0	0	0		ENST00000467042.1_1_2:99182504-99185377:+|nuORF	ENST00000467042.1_1_2:99182504-99185377:+|nuORF	ENST00000467042.1_1_2:99182504-99185377:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.20452810636664	3	408.204528	1221.59175	1.5502	0.00063278	2.3773	0.00097044	3.9275	0.0016032	408.2055512269643	16.614	0.071907	16.614	16.566	16.638	0	1485	52	0.72280174	0.031579494	0.72280174	439.15936	0	19.187042						194	4	4	NaN	NaN	NaN	0.68699	1	17017	17017		8.9416	1.354	1	38419			14819	7119	8596	8773	11707	11707					-0.01017728796296069
LPEEDVAEI	9	Unmodified	_LPEEDVAEI_					0	0	0		ENST00000473552.1_1_X:153991228-153994704:+|nuORF;nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	ENST00000473552.1_1_X:153991228-153994704:+|nuORF	ENST00000473552.1_1_X:153991228-153994704:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4989829903001	1	1014.49898	1013.49171	2.0429	0.0020725	2.0296	0.002059	4.0725	0.0041315	1014.5019755401648	23.923	0.16883	23.923	23.875	24.044	0	246	67	1.4731345	0.039088726	1.4731345	299.03885	0	7.9348145						303	8	4	NaN	NaN	NaN	0.042816	1	9120	9120		49.961	5.6589	1	32643			14820	2676	8597	8774	11708	11708					-0.014499661300874322
LPEEEQQRVL	10	Unmodified	_LPEEEQQRVL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.830234344	2	620.830234	1239.64592	2.0917	0.0012986	-1.5153	-0.00094077	0.57634	0.00035781	620.829600236786	17.765	0.23979	17.765	17.717	17.957	0	1170	67	0.91673553	0.040412188	0.91673553	371.26935	0	16.366577						568	11	5	NaN	NaN	NaN	0.00013585	1	17523	17523		107.32	54.181	1	226280			14821	1672	8598	8775	11709	11709					0.03567863355283407
LPEEEQQRVL	10	Unmodified	_LPEEEQQRVL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.830234344	2	620.830234	1239.64592	1.7396	0.00108	-0.48559	-0.00030147	1.254	0.00077852	620.8299410217708	17.786	0.35984	17.772	17.724	18.084	-0.013786	1170	70	0.91673553	0.04224229	0.9152161	371.26935	0	17.107727						610	16	5	NaN	NaN	NaN	4.8409E-06	1	16782	16782		123.53	57.048	1	235950			14822	1672	8598	8775	11710	11710					0.03567863355283407
LPEEIREPAL	10	Unmodified	_LPEEIREPAL_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8244206846001	2	583.824421	1165.63429	2.0959	0.0012236	-2.756	-0.001609	-0.66005	-0.00038535	583.8222979504534	22.284	0.12063	22.284	22.26	22.38	0	1182	70	0.9093879	0.042265058	0.9093879	368.55106	0	17.128937						283	6	4	NaN	NaN	NaN	0.22504	1	15332	15332		33.907	8.1064	1	52962			14823	2155	8599	8776	11711	11711					0.0580966633197022
LPEEIREPAL	10	Unmodified	_LPEEIREPAL_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8244206846001	2	583.824421	1165.63429	1.3253	0.00077375	-1.4692	-0.00085775	-0.14387	-8.3997E-05	583.8231613621257	22.308	0.14451	22.294	22.246	22.39	-0.013731	1182	73	0.9093879	0.044105053	0.90786844	368.55106	0	17.874634						276	7	3	NaN	NaN	NaN	0.076066	1	14802	14802		58.769	25.991	1	52825			14824	2155	8599	8776	11712	11712					0.0580966633197022
LPEEIREPAL	10	Unmodified						0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	583.824421	1165.63429	2.2411	0.0013084	-5.7352	-0.0033484	-3.4941	-0.0020399	583.8219049658741	22.5	0.072325	22.486	22.438	22.511	-0.013731	1194	31	0.902037	0.018379092	0.9005176	365.57196		7.448578	0.10125	-0.0031513	-0.0044351	NaN	33.907	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2799.9			14825	2155	8599	8776							0.0580966633197022
LPEEISGLTSL	11	Unmodified	_LPEEISGLTSL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.8162613015	2	579.816261	1157.61797	1.6413	0.00095166	-0.87009	-0.00050449	0.77122	0.00044716	579.816087879235	29.401	0.096512	29.401	29.353	29.449	0	1218	73	0.8873258	0.044133663	0.8873258	359.639	0	17.887665						182	5	3	NaN	NaN	NaN	7.9405E-05	1	15076	15076		87.778	41.952	1	64547			14826	3079	8600	8777	11713	11713					0.04546540375190489
LPEEISGLTSL	11	Unmodified	_LPEEISGLTSL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;ENST00000487251.5_1_6:53762124-53769284:+|nuORF	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.8162613015	2	579.816261	1157.61797	1.2468	0.00072291	-1.3735	-0.00079636	-0.12668	-7.345E-05	579.8151063079479	29.4	0.12064	29.393	29.344	29.465	-0.0077209	1218	64	0.8873258	0.038623214	0.8858064	359.639	0	15.654236						198	6	3	NaN	NaN	NaN	0.01741	1	14577	14577		63.765	29.311	1	71010			14827	3079	8600	8777	11714	11714					0.04546540375190489
LPEELFLLL	9	Unmodified	_LPEELFLLL_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8259007410501	2	543.825901	1085.63725	0.86088	0.00046817	-4.7013	-0.0025567	-3.8404	-0.0020885	543.8235172742955	41.45	0.14448	41.45	41.401	41.546	0	1224	40	0.883646	0.02391994	0.883646	358.427	0	9.702484						133	7	3	NaN	NaN	NaN	0.36492	1	12219	12219		15.175	3.6269	1	10010			14828	6194	8601	8778	11715	11715					0.09785541456767533
LPEELFLLL	9	Unmodified						0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.825901	1085.63725	1.2351	0.00067169	-4.0488	-0.0022019	-2.8137	-0.0015302	544.3257600360845	41.424	0.048195	41.432	41.384	41.432	0.0082626	1224	43	0.883646	0.025755763	0.88212657	358.427		10.447144	-0.0086164	0.00041625	-0.00075972	NaN	15.175	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5245.9			14829	6194	8601	8778							0.09785541456767533
LPEENYQVL	9	Unmodified	_LPEENYQVL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7822215189001	2	552.782222	1103.54989	1.321	0.00073023	-1.9005	-0.0010505	-0.57945	-0.00032031	552.7809998291925	24.574	0.26529	24.574	24.478	24.743	0	1227	106	0.88180584	0.06445563	0.88180584	357.6078	0	26.139343						754	12	3	NaN	NaN	NaN	0.070055	1	12989	12989		40.154	18.319	1	166770			14830	4987	8602	8779	11716	11716					0.0022571551519376953
LPEENYQVL	9	Unmodified	_LPEENYQVL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.5571665712	1	1104.55717	1103.54989	1.5157	0.0016742	-0.46218	-0.00051051	1.0535	0.0011637	1104.5570322473807	24.55	0.21703	24.55	24.502	24.719	0	96	64	1.5617468	0.037116647	1.5617468	316.67923	0	7.526245						309	10	3	NaN	NaN	NaN	0.013696	1	12990	12990		81.699	37.924	1	43773			14831	4987	8602	8779	11717	11717					0.0022571551519376953
LPEENYQVL	9	Unmodified	_LPEENYQVL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7822215189001	2	552.782222	1103.54989	1.476	0.0008159	-1.42	-0.00078497	0.05597	3.0939E-05	552.7812631259039	24.574	0.26534	24.562	24.489	24.755	-0.012392	1227	97	0.88180584	0.058934033	0.8802864	357.6078	0	23.900116						801	12	4	NaN	NaN	NaN	0.13602	1	12642	12642		30.61	1.7145	1	154320			14832	4987	8602	8779	11718	11718					0.0022571551519376953
LPEENYQVL	9	Unmodified	_LPEENYQVL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.5571665712	1	1104.55717	1103.54989	1.406	0.001553	-0.25889	-0.00028596	1.1471	0.001267	1104.5567423527677	24.574	0.14465	24.562	24.514	24.658	-0.012392	93	64	1.5635144	0.037112713	1.5619949	317.0376	0	7.5254517						285	7	3	NaN	NaN	NaN	0.04743	1	12643	12643		48.002	26.167	1	39179			14833	4987	8602	8779	11719	11719					0.0022571551519376953
LPEEPVSQL	9	Unmodified	_LPEEPVSQL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5357028476002	1	1011.5357	1010.52843	2.3487	0.0023758	-1.3151	-0.0013303	1.0336	0.0010455	1011.5338726388132	23.344	0.072388	23.331	23.307	23.379	-0.013294	261	49	1.4642475	0.028446317	1.462728	297.24652	0	5.7746887						80	4	2	NaN	NaN	NaN	0.65696	1	8825	8825		2.8895	0.42796	1	6101.9			14834	5325	8603	8780	11720	11720					0.023583304864928323
LPEEPVSQL	9	Unmodified						0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1011.5357	1010.52843	2.1086	0.0021329	0.32465	0.0003284	2.4333	0.0024613	1011.5347154386957	23.345	0.072342	23.345	23.296	23.369	0	267	46	1.4606913	0.02667272	1.4606913	296.5246		5.414612	0.0069127	0.0012694	-0.0010184	NaN	2.8895	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5933.3			14835	5325	8603	8780							0.023583304864928323
LPEEVEAEV	9	Unmodified	_LPEEVEAEV_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4989829903001	1	1014.49898	1013.49171	2.1104	0.002141	-1.1673	-0.0011842	0.94313	0.0009568	1014.497354335461	22.38	0.048243	22.38	22.356	22.405	0	249	79	1.4713576	0.046235085	1.4713576	298.67813	0	9.385468						108	3	3	NaN	NaN	NaN	0.04947	1	9119	9119		47.136	12.697	1	7204.4			14836	597	8604	8781	11721	11721					-0.014499661300874322
LPEEVSLQEQL	11	Unmodified	_LPEEVSLQEQL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.8377250251002	2	642.837725	1283.6609	2.3457	0.0015079	-0.35835	-0.00023036	1.9874	0.0012776	642.8380884380132	26.094	0.14483	26.094	26.07	26.215	0	1131	94	0.94059354	0.056824803	0.94059354	380.78775	0	23.004822						265	7	3	NaN	NaN	NaN	0.64656	1	18495	18495		10.965	3.9808	1	34146			14837	5725	8605	8782	11722	11722					0.030413104326498797
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7946006126501	2	545.794601	1089.57465	0.4818	0.00026296	-2.6475	-0.001445	-2.1656	-0.001182	545.7930156828389	35.241	0.24134	35.241	35.096	35.337	0	1242	70	0.87260187	0.042342782	0.87260187	353.9312	0	17.174408						219	11	3	NaN	NaN	NaN	0.049695	1	12380	12380		47.04	8.1223	1	25474			14838	4933	8606	8783	11723	11723					0.03344395388580779
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5819247587	1	1090.58192	1089.57465	1.3295	0.0014499	0.11739	0.00012803	1.4469	0.001578	1090.581790713795	35.241	0.19301	35.241	35.192	35.385	0	69	94	1.5776473	0.054773927	1.5776473	319.95407	0	11.108398						449	9	4	NaN	NaN	NaN	0.0040938	1	12381	12381		104.71	49.217	1	94420			14839	4933	8606	8783	11724	11724					0.03344395388580779
LPEFVEPFL	9	Unmodified	_LPEFVEPFL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5819247587	1	1090.58192	1089.57465	0.91762	0.0010007	0.40788	0.00044482	1.3255	0.0014456	1090.5825992098316	35.239	0.21713	35.239	35.191	35.408	-4.1962E-05	69	112	1.5776473	0.06539607	1.5761279	319.95407	0	13.262634						481	10	5	NaN	NaN	NaN	0.0040938	1	12075	12075		104.71	46.112	1	88996			14840	4933	8606	8783	11725	11725					0.03344395388580779
LPEGGETPL	9	Unmodified	_LPEGGETPL_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4672889314	1	912.467289	911.460012	1.6725	0.0015261	-0.24824	-0.00022651	1.4243	0.0012996	912.4670091014605	21.248	0.19267	21.248	21.151	21.344	0	378	91	1.3947657	0.053604126	1.3947657	283.5554	0	10.897705						305	9	2	NaN	NaN	NaN	0.036546	1	6246	6246		52.624	0	1	33197		+	14841	3621	8607	8784	11726	11726					0.0007408590662407732
LPEGGETPL	9	Unmodified	_LPEGGETPL_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4672889314	1	912.467289	911.460012	1.5451	0.0014098	-0.46677	-0.00042591	1.0783	0.00098391	912.4663828043383	21.224	0.21657	21.21	21.162	21.378	-0.014004	378	91	1.3947657	0.053598404	1.3932463	283.5554	0	10.896545						397	10	3	NaN	NaN	NaN	0.028349	1	6128	6128		61.271	0	1	34179		+	14842	3621	8607	8784	11727	11727					0.0007408590662407732
LPEGIRPGTVL	11	Unmodified	_LPEGIRPGTVL_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.34278061325	2	576.342781	1150.67101	2.0863	0.0012024	-0.83898	-0.00048354	1.2473	0.0007189	576.3421187797034	22.863	0.24095	22.863	22.814	23.055	0	1185	58	0.90755045	0.034918368	0.90755045	367.86234	0	14.153687						314	11	4	NaN	NaN	NaN	0.066897	1	14842	14842		45.55	4.5932	1	68051			14843	5132	8608	8785	11728	11728					0.10169962948521061
LPEGIRPGTVL	11	Unmodified	_LPEGIRPGTVL_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.34278061325	2	576.342781	1150.67101	1.4447	0.00083262	-0.91436	-0.00052699	0.5303	0.00030563	576.3423012748635	22.91	0.16881	22.896	22.848	23.017	-0.01354	1185	58	0.90755045	0.034914613	0.906031	367.86234	0	14.15213						304	8	4	NaN	NaN	NaN	0.066897	1	14337	14337		45.55	18.504	1	67318			14844	5132	8608	8785	11729	11729					0.10169962948521061
LPEGQVDSL	9	Unmodified	_LPEGQVDSL_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.488752655	1	957.488753	956.481476	1.4709	0.0014084	0.63963	0.00061244	2.1105	0.0020208	957.4893442681441	21.561	0.16875	21.561	21.488	21.657	0	300	49	1.4411188	0.028485656	1.4411188	292.77374	0	5.7870483						158	8	2	NaN	NaN	NaN	0.017791	1	7250	7250		74.794	26.792	1	15437			14845	7244	8609	8786	11730	11730					0.001494709353323742
LPEGQVDSL	9	Unmodified	_LPEGQVDSL_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.488752655	1	957.488753	956.481476	1.7465	0.0016723	0.61084	0.00058487	2.3574	0.0022572	957.4886117833764	21.537	0.16863	21.523	21.475	21.643	-0.014004	300	52	1.4411188	0.030267596	1.4395994	292.77374	0	6.1490784						155	8	2	NaN	NaN	NaN	0.050761	1	7110	7110		46.588	17.692	1	14490			14846	7244	8609	8786	11731	11731					0.001494709353323742
LPEHNYVVL	9	Unmodified	_LPEHNYVVL_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2952991044001	2	542.295299	1082.57605	1.3754	0.00074585	-2.3321	-0.0012647	-0.95671	-0.00051882	542.2937475454701	21.946	0.16856	21.932	21.86	22.028	-0.013895	1230	79	0.8799654	0.047883928	0.878446	356.94672	0	19.423492						291	8	4	NaN	NaN	NaN	0.16939	1	11791	11791		27.296	9.4972	1	64952			14847	6072	8610	8787	11732	11732					0.038060294773458736
LPEIAWISTM	10	Unmodified	_LPEIAWISTM_					0	0	0		OR6K2|p.L165M|1|0.38|ENSG00000196171|chr1:158700160-158700160|G/T|missense_variant	OR6K2|p.L165M|1|0.38|ENSG00000196171|chr1:158700160-158700160|G/T|missense_variant	OR6K2|p.L165M|1|0.38|ENSG00000196171|chr1:158700160-158700160|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8046423702	2	580.804642	1159.59473	0.94181	0.00054701	-0.51044	-0.00029646	0.43138	0.00025054	580.8043579445599	33.189	0.12067	33.186	33.162	33.283	-0.0024796	1191	46	0.90387505	0.027570128	0.9023556	366.33917	0	11.174133						166	6	3	NaN	NaN	NaN	0.65442	1	14622	14622		11.17	1.5587	1	33260			14848	8085	8611	8788	11733	11733					0.021318230568567742
LPEKEVLVL	9	Unmodified	_LPEKEVLVL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3235252276	2	520.323525	1038.6325	1.7509	0.00091102	-0.9222	-0.00047984	0.82867	0.00043118	520.3232237746099	23.995	0.14472	23.995	23.947	24.092	0	1242	55	0.87260187	0.0331468	0.87260187	354.1479	0	13.452698						320	7	4	NaN	NaN	NaN	0.061945	1	10168	10168		41.839	4.5362	1	124770			14849	3059	8612	8789	11734	11734					0.11472657313993295
LPEKEVLVL	9	Unmodified	_LPEKEVLVL_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3235252276	2	520.323525	1038.6325	1.6585	0.00086298	-1.3558	-0.00070546	0.30273	0.00015752	520.322956421412	24.019	0.16889	24.006	23.958	24.127	-0.012747	1242	52	0.87260187	0.031303644	0.8710824	354.1479	0	12.704651						343	8	4	NaN	NaN	NaN	0.10945	1	9959	9959		34.454	0.015189	1	119610			14850	3059	8612	8789	11735	11735					0.11472657313993295
LPEKLTIYTTL	11	Unmodified	_LPEKLTIYTTL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3790287338	2	646.379029	1290.7435	2.3393	0.0015121	-2.3823	-0.0015399	-0.043028	-2.7812E-05	646.3776852307526	26.119	0.16894	26.119	26.07	26.239	0	1116	67	0.94976085	0.04031205	0.94976085	384.47653	0	16.318878						240	8	4	NaN	NaN	NaN	0.073935	1	18607	18607		43.765	15.269	1	45477			14851	3058	8613	8790	11736	11736					0.10976252231421313
LPEKLTIYTTL	11	Unmodified	_LPEKLTIYTTL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.3790287338	2	646.379029	1290.7435	2.2094	0.0014281	-3.3146	-0.0021425	-1.1051	-0.00071434	646.3769111460982	26.143	0.24128	26.131	26.083	26.324	-0.011137	1116	58	0.94976085	0.0348168	0.9482414	384.47656	0	14.09433						258	11	3	NaN	NaN	NaN	0.48738	1	17777	17777		18.924	4.4993	1	42678			14852	3058	8613	8790	11737	11737					0.10976252231421313
LPELDGKDKA	10	Unmodified	_LPELDGKDKA_					0	0	0			REV__TNKS2|p.V246E|1|0.51|ENSG00000107854|chr10:91822304-91822304|T/A|missense_variant	REV__TNKS2|p.V246E|1|0.51|ENSG00000107854|chr10:91822304-91822304|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2954960696501	2	543.295496	1084.57644	2.1097	0.0011462	-9.9399	-0.0054003	-7.8302	-0.0042541	543.2897085881068	18.602	0.072002	18.588	18.588	18.66	-0.014059	1266	55	0.85786515	0.03318268	0.8563457	347.974	0	13.459778						67	4	2	NaN	NaN	NaN	0.5358	1	11861	11861		17.97	0	1	6693.6	+		14853	13378	8614	8791	11738	11738					0.03753404406529626
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.29476778815007	2	496.294768	990.574983	1.7227	0.00085495	-4.031	-0.0020006	-2.3083	-0.0011456	496.29247932413097	29.836	0.096561	29.836	29.787	29.884	0	1317	46	0.8265074	0.027692616	0.8265074	335.6531	0	11.246246						93	5	2	NaN	NaN	NaN	0.089764	1	8249	8249		37.302	11.187	1	9968.4			14854	5803	8615	8792	11739	11739					0.07931815108440787
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5822591097002	1	991.582259	990.574983	2.1295	0.0021116	-1.8545	-0.0018389	0.27498	0.00027267	991.5796217429717	29.836	0.12069	29.836	29.787	29.908	0	219	67	1.4891195	0.03905976	1.4891195	302.37756	0	7.9313965						194	6	3	NaN	NaN	NaN	0.33629	1	8250	8250		16.584	5.0357	1	17436			14855	5803	8615	8792	11740	11740					0.07931815108440787
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.29476778815007	2	496.294768	990.574983	0.75416	0.00037429	-3.6612	-0.001817	-2.907	-0.0014427	496.2929380325637	29.835	0.12066	29.828	29.779	29.9	-0.0070667	1314	49	0.8283535	0.02954036	0.8268341	336.40286	0	11.996643						119	6	2	NaN	NaN	NaN	0.048656	1	8079	8079		47.482	5.1639	1	13048			14856	5803	8615	8792	11741	11741					0.07931815108440787
LPELNPPVL	9	Unmodified	_LPELNPPVL_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5822591097002	1	991.582259	990.574983	1.3264	0.0013152	-0.3705	-0.00036738	0.95589	0.00094784	991.5824192171707	29.835	0.12066	29.828	29.779	29.9	-0.0070667	216	76	1.4908947	0.044383764	1.4893752	302.738	0	9.012482						189	6	3	NaN	NaN	NaN	0.10363	1	8080	8080		35.296	10.734	1	17782			14857	5803	8615	8792	11742	11742					0.07931815108440787
LPENENVGP	9	Unmodified	_LPENENVGP_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.73781401525	2	484.737814	967.461075	1.9989	0.00096894	4.168	0.0020204	6.1669	0.0029893	484.7395758953149	14.908	0.07204	14.896	14.872	14.944	-0.011738	1299	31	0.8375814	0.018452704	0.83606195	340.26166	0	7.4963074						52	4	2	NaN	NaN	NaN	0.66196	1	7392	7392		2.4615	0.53688	1	3650.7			14858	5073	8616	8793	11743	11743					-0.023956997244681588
LPENSAPLIE	10	Unmodified	_LPENSAPLIE_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL-WDR70|1|fusion;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.790046551	2	541.790047	1081.56554	0.79234	0.00042928	1.6681	0.00090377	2.4605	0.001333	541.7919375493107	35.144	0.072433	35.144	35.096	35.168	0	1230	37	0.8799654	0.022085905	0.8799654	356.95087	0	8.958984						58	4	2	NaN	NaN	NaN	0.76892	1	12058	12058		3.2116	0	1	3704.7			14859	4305	8617	8794	11744	11744					0.02802002032240125
LPEPEELDL	9	Unmodified	_LPEPEELDL_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5302831187	1	1054.53028	1053.52301	1.3018	0.0013728	-1.2622	-0.001331	0.039591	4.175E-05	1054.5287859693149	27.687	0.096512	27.677	27.629	27.726	-0.009552	222	82	1.4873441	0.047919154	1.4858247	301.7693	0	9.722382						122	5	2	NaN	NaN	NaN	0.055351	1	10570	10570		44.638	15.04	1	17590			14860	3267	8618	8795	11745	11745					-0.001613930959820209
LPEPGNPR	8	Unmodified	_LPEPGNPR_					0	0	0		ENST00000520904.3_1_X:2747387-2761257:+|nuORF	ENST00000520904.3_1_X:2747387-2761257:+|nuORF	ENST00000520904.3_1_X:2747387-2761257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.23778422550004	2	440.237784	878.461016	1.389	0.0006115	-2.7887	-0.0012277	-1.3997	-0.00061621	440.23657053689	17.381	0.095953	17.381	17.333	17.429	0	1479	40	0.72651637	0.024143755	0.72651637	295.56088	0	9.822144						87	5	3	NaN	NaN	NaN	0.81251	1	5784	5784		7.5404	0.67717	1	8388.1			14861	7397	8619	8796	11746	11746					0.01692345066192047
LPEPNHVML	9	Unmodified	_LPEPNHVML_					0	0	0		ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2760521062501	2	525.276052	1048.53755	1.5807	0.0008303	-2.3676	-0.0012436	-0.7869	-0.00041334	525.274762466746	21.73	0.26495	21.73	21.585	21.85	0	1296	67	0.8394264	0.040574074	0.8394264	340.64142	0	16.465088						281	12	3	NaN	NaN	NaN	0.028569	1	10570	10570		60.984	23.681	1	43353			14862	1831	8620	8797	11747	11747					0.015224005711615973
LPEPNHVML	9	Unmodified	_LPEPNHVML_					0	0	0		ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2760521062501	2	525.276052	1048.53755	1.2883	0.00067671	-0.77012	-0.00040453	0.51817	0.00027218	525.2752184336134	21.729	0.24072	21.715	21.619	21.86	-0.013897	1299	61	0.8375814	0.036889493	0.83606195	339.89273	0	14.969879						266	11	3	NaN	NaN	NaN	0.10945	1	10352	10352		34.454	4.8557	1	42529			14863	1831	8620	8797	11748	11748					0.015224005711615973
LPEPNILQL	9	Unmodified	_LPEPNILQL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8054996499501	2	518.8055	1035.59645	0.82147	0.00042618	0.28292	0.00014678	1.1044	0.00057297	518.8057258617323	31.355	0.1689	31.35	31.277	31.446	-0.0050716	1281	40	0.84864825	0.023969114	0.8471288	344.43945	0	9.728302						149	8	2	NaN	NaN	NaN	0.2961	1	9821	9821		19.164	1.3646	1	14990			14864	4106	8621	8798	11749	11749					0.08007200137149084
LPEPNKDAIF	10	Unmodified	_LPEPNKDAIF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3058637907	2	572.305864	1142.59717	1.7144	0.00098116	-6.9512	-0.0039782	-5.2368	-0.0029971	572.8004918136085	22.453	0.12037	22.453	22.38	22.501	0	1188	49	0.90571284	0.029403389	0.90571284	367.14822	0	11.91922						103	6	2	NaN	NaN	NaN	0.38087	1	14552	14552		24.393	1.059	1	17191			14865	5557	8622	8799	11750	11750					0.03157994786170093
LPEPNKDAIF	10	Unmodified						0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.305864	1142.59717	1.0163	0.00058163	-1.1545	-0.00066073	-0.13823	-7.9108E-05	572.3049840947655	22.476	0.096445	22.462	22.438	22.535	-0.013733	1185	37	0.90755045	0.022050142	0.906031	367.89313		8.938477	0.0048275	0.0024053	0.00015909	NaN	24.393	95	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12777			14866	5557	8622	8799							0.03157994786170093
LPEPNPVQI	9	Unmodified	_LPEPNPVQI_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.78202455365005	2	503.782025	1005.5495	1.4739	0.00074253	-1.6306	-0.00082146	-0.15667	-7.8928E-05	503.78136144912736	24.791	0.12066	24.791	24.743	24.864	0	1329	58	0.81912065	0.035084903	0.81912065	332.58545	0	14.245422						140	6	3	NaN	NaN	NaN	0.31471	1	8810	8810		17.97	1.3855	1	13334			14867	4135	8623	8800	11751	11751					0.04694340586001999
LPEPNPVQI	9	Unmodified						0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	503.782025	1005.5495	1.1702	0.00058952	-0.63193	-0.00031836	0.53825	0.00027116	503.7820300350578	24.791	0.14472	24.779	24.731	24.875	-0.012394	1326	67	0.8209676	0.040618062	0.81944823	333.33536		16.492035	-0.006283	0.00067292	0.00016377	NaN	17.97	131	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12911			14868	4135	8623	8800							0.04694340586001999
LPEPQQTAL	9	Unmodified	_LPEPQQTAL_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;ENST00000469133.1_1_7:24747667-24749942:-|nuORF	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.77165683259994	2	498.771657	995.528761	1.4857	0.00074105	-1.1238	-0.00056051	0.36196	0.00018054	498.7710662472656	21.248	0.072243	21.248	21.224	21.296	0	1338	58	0.81357855	0.035092473	0.81357855	330.38007	0	14.250458						70	4	2	NaN	NaN	NaN	0.40649	1	8414	8414		13.463	0.87517	1	5573			14869	1575	8624	8801	11752	11752					0.030817502063200664
LPEPQQTAL	9	Unmodified						0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;ENST00000469133.1_1_7:24747667-24749942:-|nuORF	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.771657	995.528761	1.3336	0.00066517	-2.027	-0.001011	-0.69337	-0.00034583	498.77077272409787	21.272	0.048119	21.258	21.234	21.282	-0.014004	1338	43	0.81357855	0.02586186	0.8120591	330.38007		10.502045	0.0051223	-0.00027646	-0.00075972	NaN	13.463	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5782.7			14870	1575	8624	8801							0.030817502063200664
LPEPYWIVL	9	Unmodified	_LPEPYWIVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.31824288445	2	565.318243	1128.62193	1.9716	0.0011146	-2.7108	-0.0015325	-0.73922	-0.0004179	565.3164530574177	36.398	0.33756	36.398	36.326	36.663	0	1227	97	0.88180584	0.058870375	0.88180584	357.5098	0	23.867767						786	15	4	NaN	NaN	NaN	0.12945	1	14041	14041		31.561	1.9627	1	200860			14871	1864	8625	8802	11753	11753					0.06276674659557102
LPEPYWIVL	9	Unmodified	_LPEPYWIVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.31824288445	2	565.318243	1128.62193	1.6794	0.0009494	-1.599	-0.00090397	0.080365	4.5432E-05	565.3173857632341	36.396	0.19265	36.398	36.326	36.519	0.0016785	1224	91	0.883646	0.05519098	0.88212657	358.25586	0	22.376007						640	9	4	NaN	NaN	NaN	0.062072	1	13599	13599		41.785	9.3317	1	141760			14872	1864	8625	8802	11754	11754					0.06276674659557102
LPEQSSDAL	9	Unmodified	_LPEQSSDAL_					0	0	0		nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13	nc|ENSG00000161955|O75888-2|TNFSF13	nc|ENSG00000161955|O75888-2|TNFSF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.4680172129	1	959.468017	958.460741	2.6271	0.0025206	0.26284	0.00025219	2.8899	0.0027728	959.4653483863558	18.914	0.072063	18.9	18.9	18.972	-0.014059	300	31	1.4411188	0.01780355	1.4395994	292.76517	0	3.6168213						47	4	2	NaN	NaN	NaN	0.13999	1	7152	7152		30.035	13.451	1	2801.4			14873	4111	8626	8803	11755	11755					-0.020151194443315035
LPERNVPSL	9	Unmodified	_LPERNVPSL_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7929235909501	2	512.792924	1023.57129	2.3295	0.0011946	-2.6516	-0.0013597	-0.32212	-0.00016518	512.7916544449673	18.94	0.23991	18.94	18.844	19.084	0	1308	55	0.83204526	0.033218563	0.83204526	337.7529	0	13.484436						352	11	4	NaN	NaN	NaN	0.12104	1	9527	9527		32.778	9.6604	1	66710			14874	6495	8627	8804	11756	11756					0.0604514533456495
LPERNVPSL	9	Unmodified	_LPERNVPSL_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7929235909501	2	512.792924	1023.57129	1.4352	0.00073594	-1.1142	-0.00057138	0.32091	0.00016456	512.7923099160464	18.962	0.2162	18.948	18.9	19.116	-0.014059	1308	55	0.83204526	0.033218563	0.8305259	337.75287	0	13.484436						312	10	3	NaN	NaN	NaN	0.032409	1	9348	9348		55.958	17.827	1	67258			14875	6495	8627	8804	11757	11757					0.0604514533456495
LPESGLLSVL	10	Unmodified	_LPESGLLSVL_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.6033884823	1	1027.60339	1026.59611	1.1885	0.0012213	-0.57095	-0.00058671	0.61754	0.00063459	1027.6028932002284	33.311	0.12067	33.311	33.262	33.383	0	165	58	1.5210435	0.033667326	1.5210435	308.7112	0	6.83313						180	6	3	NaN	NaN	NaN	0.0010171	1	9641	9641		89.256	44.617	1	20264			14876	1849	8628	8805	11758	11758					0.08387780417297108
LPESGLLSVL	10	Unmodified	_LPESGLLSVL_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.6033884823	1	1027.60339	1026.59611	0.83421	0.00085723	-0.68533	-0.00070424	0.14888	0.00015299	1027.603253942706	33.285	0.14477	33.283	33.259	33.403	-0.0024757	162	64	1.5228153	0.037207246	1.5212959	309.07083	0	7.551605						166	7	3	NaN	NaN	NaN	0.17937	1	9450	9450		37.302	11.187	1	16522			14877	1849	8628	8805	11759	11759					0.08387780417297108
LPESGSSLAL	10	Unmodified	_LPESGSSLAL_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5200527834	1	973.520053	972.512776	1.7653	0.0017185	-1.4415	-0.0014033	0.32375	0.00031518	973.5183708030337	24.164	0.26553	24.164	24.092	24.357	0	273	76	1.4571344	0.044463873	1.4571344	295.95813	0	9.031036						432	12	3	NaN	NaN	NaN	0.011153	1	7679	7679		69.782	17.158	1	77433			14878	6001	8629	8806	11760	11760					0.025420439694244124
LPESGSSLAL	10	Unmodified	_LPESGSSLAL_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.5200527834	1	973.520053	972.512776	1.6198	0.001577	-1.4395	-0.0014014	0.18031	0.00017554	973.5185645466997	24.188	0.26545	24.175	24.079	24.344	-0.012749	270	91	1.458913	0.053348184	1.4573935	296.31937	0	10.835541						447	12	4	NaN	NaN	NaN	0.040041	1	7530	7530		55.413	18.111	1	68881			14879	6001	8629	8806	11761	11761					0.025420439694244124
LPESIGALL	9	Unmodified	_LPESIGALL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5400599440003	1	912.54006	911.532783	1.1944	0.00109	0.037194	3.3941E-05	1.2316	0.0011239	912.5397812636128	31.018	0.14482	31.018	30.97	31.115	0	315	70	1.4322147	0.040972114	1.4322147	291.16843	0	8.32962						237	7	3	NaN	NaN	NaN	0.043119	1	6264	6264		49.833	5.5305	1	41992			14880	3079	8630	8807	11762	11762					0.0734783970007129
LPESIGALL	9	Unmodified	_LPESIGALL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5400599440003	1	912.54006	911.532783	1.4879	0.0013578	-0.91274	-0.00083291	0.57521	0.0005249	912.5394856526908	31.017	0.14484	31.012	30.964	31.109	-0.0050716	309	103	1.435777	0.060583472	1.4342575	291.89264	0	12.316589						266	7	3	NaN	NaN	NaN	0.014943	1	6142	6142		78.398	22.45	1	44448			14881	3079	8630	8807	11763	11763					0.0734783970007129
LPESLTSLLVL	11	Unmodified	_LPESLTSLLVL_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8604718399001	2	592.860472	1183.70639	1.1047	0.00065493	-1.955	-0.0011591	-0.85035	-0.00050414	592.8584835533933	37.816	0.09623	37.819	37.795	37.891	0.0028229	1164	40	0.9204082	0.023870885	0.91888875	372.9507	0	9.672546						100	5	3	NaN	NaN	NaN	0.038403	1	15368	15368		52.78	12.626	1	8329.3			14882	4125	8631	8808	11764	11764					0.12188580685665329
LPESVSIFSL	10	Unmodified	_LPESVSIFSL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5983031044	1	1091.5983	1090.59103	1.5062	0.0016442	-0.61507	-0.00067141	0.89117	0.0009728	1091.598121720035	33.6	0.16882	33.6	33.528	33.697	0	90	79	1.5652816	0.045946717	1.5652816	317.44257	0	9.318085						367	8	4	NaN	NaN	NaN	0.000399	1	12435	12435		91.563	38.939	1	69727			14883	632	8632	8809	11765	11765					0.04935476554669549
LPESVSIFSL	10	Unmodified	_LPESVSIFSL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5983031044	1	1091.5983	1090.59103	0.59337	0.00064772	-0.028158	-3.0737E-05	0.56521	0.00061699	1091.59889957442	33.575	0.24132	33.573	33.525	33.766	-0.0018463	87	79	1.5670487	0.045956492	1.5655292	317.80093	0	9.320068						349	11	3	NaN	NaN	NaN	0.033206	1	12121	12121		58.235	18.777	1	63124			14884	632	8632	8809	11766	11766					0.04935476554669549
LPETPMPLL	9	Unmodified	_LPETPMPLL_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7831786466	2	505.783179	1009.5518	1.2923	0.00065364	-2.4215	-0.0012247	-1.1291	-0.0005711	505.78207891888246	30.655	0.096514	30.649	30.625	30.722	-0.0057545	1311	28	0.83019954	0.016613781	0.8286801	337.0657	0	6.74527						72	5	2	NaN	NaN	NaN	0.39244	1	8797	8797		14.042	6.5012	1	5102.5	+		14885	8927	8633	8810	11767	11767					0.047410529994408535
LPETPMPLL	9	Unmodified	_LPETPMPLL_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7831786466	2	505.783179	1009.5518	2.2172	0.0011214	4.3993	0.0022251	6.6164	0.0033465	505.78494758596804	17.282	0.095938	17.268	17.244	17.34	-0.013567	1308	28	0.83204526	0.016610146	0.8305259	337.8151	0	6.7438354						43	5	2	NaN	NaN	NaN	0.39244	1	8799	8799		14.042	0.092821	1	3406.2	+		14886	8927	8633	8810	11768	11768					0.047410529994408535
LPETTFPAL	9	Unmodified	_LPETTFPAL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5349745661	1	988.534975	987.527698	1.8637	0.0018423	-0.98582	-0.00097452	0.87788	0.00086782	988.5339826836187	29.136	0.1448	29.136	29.087	29.232	0	207	82	1.496219	0.04793954	1.496219	303.83203	0	9.734894						262	7	3	NaN	NaN	NaN	0.030391	1	8132	8132		58.599	5.8409	1	25627			14887	8057	8634	8811	11769	11769					0.033435358374163116
LPETTFPAL	9	Unmodified	_LPETTFPAL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5349745661	1	988.534975	987.527698	1.3868	0.0013709	0.28145	0.00027822	1.6683	0.0016491	988.5341411522478	29.135	0.14482	29.127	29.079	29.224	-0.0077229	207	79	1.496219	0.046156645	1.4946996	303.83203	0	9.372864						273	7	3	NaN	NaN	NaN	0.023074	1	7969	7969		68.108	23.806	1	27510			14888	8057	8634	8811	11770	11770					0.033435358374163116
LPEVSDSL	8	Unmodified	_LPEVSDSL_					0	0	0		ENST00000505456.6_1_17:48624586-48625477:+|nuORF	ENST00000505456.6_1_17:48624586-48625477:+|nuORF	ENST00000505456.6_1_17:48624586-48625477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.4407398299	1	859.44074	858.433463	1.9846	0.0017057	2.0877	0.0017942	4.0723	0.0034999	859.4421687616986	26.022	0.12067	26.011	26.011	26.131	-0.011135	393	43	1.3858368	0.025004506	1.3843174	281.99893	0	5.0880737						117	6	2	NaN	NaN	NaN	0.57691	1	5383	5383		26.732	1.7706	1	14629			14889	7326	8635	8812	11771	11771					-0.0014160298470642374
LPEWKENIM	9	Unmodified	_LPEWKENIM_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.29444182465	2	580.294442	1158.57433	2.1241	0.0012326	-1.9302	-0.0011201	0.19382	0.00011247	580.2932531161123	23.634	0.2169	23.634	23.586	23.803	0	1170	64	0.91673553	0.038573205	0.91673553	371.55536	0	15.63382						346	10	5	NaN	NaN	NaN	0.12104	1	15098	15098		32.778	5.4818	1	88369			14890	5776	8636	8813	11772	11772					0.0013865239704955457
LPEWKENIM	9	Unmodified	_LPEWKENIM_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.29444182465	2	580.294442	1158.57433	1.961	0.001138	-2.169	-0.0012587	-0.20796	-0.00012068	580.2931877096576	23.658	0.26516	23.645	23.548	23.813	-0.013048	1167	67	0.91857195	0.040412188	0.9170525	372.29965	0	16.37918						416	12	5	NaN	NaN	NaN	0.14227	1	14597	14597		29.706	9.1929	1	95294			14891	5776	8636	8813	11773	11773					0.0013865239704955457
LPEWKENIM	9	Oxidation (M)	_LPEWKENIM(Oxidation (M))_		LPEWKENIM(1)		LPEWKENIM(84)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.2918991357	2	588.291899	1174.56925	1.6901	0.00099428	-0.91571	-0.0005387	0.7744	0.00045558	588.2909735741247	20.477	0.19242	20.477	20.429	20.622	0	1176	121	0.9130621	0.073556185	0.9130621	370.0072	0	29.80774						479	9	4	NaN	NaN	NaN	0.013093	1	15630	15630		83.529	36.047	1	138100			14892	5776	8636	8814	11774	11774		590			-0.011056514655820138
LPEYLIHAF	9	Unmodified	_LPEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.8002173068	2	551.800217	1101.58588	1.4447	0.00079719	-6.1449	-0.0033908	-4.7002	-0.0025936	551.7969915803108	19.972	0.12023	19.972	19.924	20.045	0	1218	43	0.8873258	0.025758564	0.8873258	359.8543	0	10.44635						163	6	3	NaN	NaN	NaN	0.45297	1	12911	12911		11.548	2.6294	1	18562			14893	1257	8637	8815	11775	11775					0.03915217482699518
LPEYLIHAF	9	Unmodified	_LPEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.8002173068	2	551.800217	1101.58588	1.4327	0.00079058	-5.1654	-0.0028503	-3.7327	-0.0020597	551.7970051597946	19.972	0.16858	19.958	19.909	20.078	-0.014141	1218	49	0.8873258	0.029438376	0.8858064	359.8543	0	11.93869						171	8	4	NaN	NaN	NaN	0.17818	1	12578	12578		26.732	6.2182	1	17732			14894	1257	8637	8815	11776	11776					0.03915217482699518
LPEYLPFVL	9	Unmodified	_LPEYLPFVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.618310265	1	1090.61831	1089.61103	0.93782	0.0010228	0.54317	0.0005924	1.481	0.0016152	1090.6186716845439	37.528	0.14457	37.53	37.458	37.603	0.0028229	60	64	1.582944	0.037073493	1.5814246	321.02814	0	7.5186768						151	7	2	NaN	NaN	NaN	0.032689	1	12083	12083		74.332	34.178	1	19514			14895	1811	8638	8816	11777	11777					0.06981272285270279
LPEYLPFVL	9	Unmodified						0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1090.61831	1089.61103	1.4434	0.0015742	0.42909	0.00046797	1.8725	0.0020422	1090.6187200167972	37.506	0.14455	37.506	37.482	37.626	0	60	70	1.582944	0.040608644	1.582944	321.02814		8.235596	-0.012192	-5.071E-05	0.00075972	NaN	74.332	258	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28776			14896	1811	8638	8816							0.06981272285270279
LPEYRNDT	8	Unmodified	_LPEYRNDT_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2432635339	2	504.243264	1006.47197	1.466	0.00073923	5.2461	0.0026453	6.7121	0.0033845	504.2463217109288	27.567	0.09654	27.567	27.519	27.615	0	1338	37	0.81357855	0.022172093	0.81357855	330.33105	0	9.00235						77	5	2	NaN	NaN	NaN	0.82627	1	8833	8833		5.6942	0.50528	1	7437.6	+		14897	8482	8639	8817	11778	11778					-0.031002973501813358
LPFAARAL	8	Unmodified	_LPFAARAL_					0	0	0		ENST00000312916.11_1_5:76326323-76326545:+|nuORF	ENST00000312916.11_1_5:76326323-76326545:+|nuORF	ENST00000312916.11_1_5:76326323-76326545:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.76343787	2	429.763438	857.512323	1.6544	0.00071101	-6.2993	-0.0027072	-4.6449	-0.0019962	429.76076700934095	18.002	0.144	17.988	17.94	18.084	-0.013786	1488	67	0.7209441	0.04086536	0.71942466	293.4042	0	16.631073						270	7	3	NaN	NaN	NaN	0.76633	1	5373	5373		13.737	0	1	50893			14898	6454	8640	8818	11779	11779					0.07786713830898861
LPFAEAEAF	9	Unmodified	_LPFAEAEAF_					0	0	0		ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	ENST00000487114.1_1_1:36644989-36645856:+|nuORF	ENST00000487114.1_1_1:36644989-36645856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.4880243735	1	994.488024	993.480748	2.0933	0.0020817	-1.548	-0.0015395	0.54527	0.00054227	994.4865322057839	28.677	0.21716	28.677	28.605	28.822	0	243	109	1.4749115	0.06396353	1.4749115	299.48047	0	12.987793						343	10	2	NaN	NaN	NaN	0.0081087	1	8336	8336		96.245	57.328	1	81558			14899	2113	8641	8819	11780	11780					-0.016253237137220822
LPFAEAEAF	9	Unmodified	_LPFAEAEAF_					0	0	0		ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	ENST00000487114.1_1_1:36644989-36645856:+|nuORF	ENST00000487114.1_1_1:36644989-36645856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.4880243735	1	994.488024	993.480748	1.4886	0.0014804	-1.013	-0.0010074	0.47558	0.00047295	994.4869921717476	28.676	0.19304	28.668	28.62	28.813	-0.0083504	240	97	1.4766881	0.056844354	1.4751687	299.84122	0	11.542206						346	9	2	NaN	NaN	NaN	0.011118	1	8171	8171		89.521	39.489	1	82018			14900	2113	8641	8819	11781	11781					-0.016253237137220822
LPFDFTWKM	9	Unmodified	_LPFDFTWKM_					0	0	0		nc|ENSG00000099783|P52272-2|HNRNPM;ENSG00000099783|ENST00000325495|HNRNPM	nc|ENSG00000099783|P52272-2|HNRNPM	nc|ENSG00000099783|P52272-2|HNRNPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.7940776839	2	592.794078	1183.5736	0.65548	0.00038856	-2.046	-0.0012129	-1.3905	-0.0008243	593.2940423735656	31.525	0.21722	31.525	31.428	31.646	0	1206	70	0.894683	0.042278767	0.894683	362.52728	0	17.13144						175	10	2	NaN	NaN	NaN	0.19268	1	15955	15955		25.801	7.8313	1	29456			14901	1161	8642	8820	11782	11782					-0.01084142251988851
LPFDGTSLFG	10	Unmodified	_LPFDGTSLFG_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2662073139502	2	527.266207	1052.51786	2.0557	0.0010839	-2.0363	-0.0010737	0.019384	1.022E-05	527.2650805408498	23.32	0.21708	23.32	23.272	23.489	0	1245	67	0.87076044	0.04051274	0.87076044	353.33957	0	16.439362						368	10	4	NaN	NaN	NaN	0.2358	1	10733	10733		32.453	3.9575	1	104310			14902	7925	8643	8821	11783	11783					-0.006296521679360012
LPFDKETGF	9	Unmodified	_LPFDKETGF_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2662073139501	2	527.266207	1052.51786	1.717	0.0009053	-0.53758	-0.00028345	1.1794	0.00062185	527.2661422388654	23.344	0.2413	23.331	23.283	23.524	-0.013294	1242	70	0.87260187	0.04236573	0.8710824	354.08676	0	17.191254						370	11	4	NaN	NaN	NaN	0.012861	1	10513	10513		84.233	28.739	1	105800			14903	2226	8644	8822	11784	11784					-0.006296521679587386
LPFFERPDFQL	11	Unmodified	_LPFFERPDFQL_					0	0	0		ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.8666198503	2	704.86662	1407.71869	0.72088	0.00050812	-2.2782	-0.0016058	-1.5573	-0.0010977	704.864581858303	30.728	0.12068	30.728	30.704	30.825	0	1089	76	0.96624947	0.045752406	0.96624947	390.807	0	18.504913						271	6	4	NaN	NaN	NaN	0.12402	1	20125	20125		37.395	16.946	1	34974			14904	5742	8645	8823	11785	11785					0.031136171486878084
LPFFERPDFQL	11	Unmodified	_LPFFERPDFQL_					0	0	0		ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.8666198503	2	704.86662	1407.71869	0.77876	0.00054892	-1.6815	-0.0011853	-0.90278	-0.00063634	704.8648859627141	30.752	0.16887	30.746	30.698	30.866	-0.0057545	1089	76	0.96624947	0.045752406	0.96473	390.807	0	18.504913						305	8	4	NaN	NaN	NaN	0.024178	1	19176	19176		59.88	31.385	1	38284			14905	5742	8645	8823	11786	11786					0.031136171486878084
LPFFTEREQTL	11	Unmodified	_LPFFTEREQTL_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.8615344724	2	690.861534	1379.70852	2.1306	0.0014719	-1.5555	-0.0010746	0.57508	0.0003973	690.8614538378118	25.853	0.072371	25.853	25.829	25.901	0	1077	52	0.9735726	0.031111658	0.9735726	393.84668	0	12.585815						117	4	3	NaN	NaN	NaN	0.3345	1	19888	19888		24.393	14.782	1	20519			14906	1013	8646	8824	11787	11787					0.03385009423459451
LPFFTEREQTL	11	Unmodified	_LPFFTEREQTL_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.8615344724	2	690.861534	1379.70852	1.9941	0.0013776	-1.3357	-0.00092282	0.65834	0.00045482	690.8605035611115	25.877	0.096548	25.865	25.841	25.938	-0.0116	1080	61	0.9717421	0.036596	0.97022265	393.10617	0	14.804443						107	5	2	NaN	NaN	NaN	0.43809	1	18956	18956		20.688	11.076	1	20023			14907	1013	8646	8824	11788	11788					0.03385009423459451
LPFGGTFDL	9	Unmodified	_LPFGGTFDL_					0	0	0		ENSG00000135318|ENST00000257770|NT5E	ENSG00000135318|ENST00000257770|NT5E	ENSG00000135318|ENST00000257770|NT5E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4931097514001	1	966.49311	965.485833	0.86603	0.00083701	-2.6413	-0.0025528	-1.7752	-0.0017157	966.4921627019098	32.417	0.14484	32.414	32.39	32.534	-0.0031052	264	94	1.4624695	0.055164576	1.46095	297.07193	0	11.205597						191	7	3	NaN	NaN	NaN	0.20577	1	7348	7348		24.961	0	1	11671			14908	2931	8647	8825	11789	11789					0.0017098014890279956
LPFGGTFDL	9	Unmodified						0	0	0		ENSG00000135318|ENST00000257770|NT5E	ENSG00000135318|ENST00000257770|NT5E	ENSG00000135318|ENST00000257770|NT5E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	966.49311	965.485833	1.3514	0.0013061	-1.7239	-0.0016661	-0.37244	-0.00035996	966.4918384309829	32.442	0.12064	32.442	32.394	32.514	0	264	91	1.4624695	0.05338788	1.4624695	297.07193		10.844696	0.014179	0.00035682	0.00075972	NaN	24.961	159	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11197			14909	2931	8647	8825							0.0017098014890279956
LPFHSPPQEAL	11	Unmodified	_LPFHSPPQEAL_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3245878601002	2	618.324588	1234.63462	1.379	0.00085264	-2.2451	-0.0013882	-0.8661	-0.00053553	618.3233358168688	21.826	0.16862	21.826	21.754	21.922	0	1164	61	0.9204082	0.036738336	0.9204082	372.7734	0	14.879364						276	8	4	NaN	NaN	NaN	0.12578	1	17397	17397		37.231	15.46	1	29586			14910	3173	8648	8826	11790	11790					0.026690860518328918
LPFHSPPQEAL	11	Unmodified	_LPFHSPPQEAL_					0	0	0		ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF;ENSG00000138646|ENST00000264350|HERC5	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	ENST00000510223.5_1_4:89394995-89425581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3245878601002	2	618.324588	1234.63462	0.85721	0.00053003	-2.1548	-0.0013324	-1.2976	-0.00080235	618.3232932250295	21.826	0.2167	21.812	21.74	21.956	-0.013895	1164	64	0.9204082	0.038573205	0.91888875	372.7734	0	15.622498						288	10	3	NaN	NaN	NaN	0.16151	1	16669	16669		33.907	14.315	1	32099			14911	3173	8648	8826	11791	11791					0.026690860518328918
LPFLEASTL	9	Unmodified	_LPFLEASTL_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5506246303001	1	990.550625	989.543348	1.3136	0.0013012	-0.3571	-0.00035373	0.95655	0.00094751	990.5500931359772	31.235	0.16892	31.235	31.139	31.308	0	219	97	1.4891195	0.056826234	1.4891195	302.38187	0	11.539185						198	8	2	NaN	NaN	NaN	0.094712	1	8202	8202		36.586	0	1	36147			14912	2401	8649	8827	11792	11792					0.04815822354487409
LPFLEASTL	9	Unmodified						0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	990.550625	989.543348	1.2726	0.0012606	-1.6825	-0.0016667	-0.40997	-0.0004061	990.5488938459097	31.234	0.16895	31.229	31.157	31.326	-0.0050716	219	106	1.4891195	0.06215048	1.4876001	302.3819		12.620331	-0.0030577	-0.00060535	-0.00075972	NaN	36.586	239	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38478			14913	2401	8649	8827							0.04815822354487409
LPFLEHLEL	9	Unmodified	_LPFLEHLEL_					0	0	0		nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	nc|ENSG00000155034|Q96ME1-2|FBXL18	nc|ENSG00000155034|Q96ME1-2|FBXL18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.81332468205	2	555.813325	1109.6121	1.0965	0.00060945	-2.0187	-0.001122	-0.92216	-0.00051255	555.8128926728489	30.752	0.21714	30.746	30.649	30.866	-0.0057545	1209	73	0.892844	0.04410982	0.8913246	362.0598	0	17.887115						336	10	4	NaN	NaN	NaN	0.023828	1	12897	12897		67.154	5.883	1	46146			14914	3866	8650	8828	11793	11793					0.061674866541807205
LPFLEHLEL	9	Unmodified						0	0	0		nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	nc|ENSG00000155034|Q96ME1-2|FBXL18	nc|ENSG00000155034|Q96ME1-2|FBXL18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.813325	1109.6121	0.64206	0.00035687	0.76986	0.0004279	1.4119	0.00078477	555.8131764202672	30.994	0.19305	30.994	30.873	31.066	0	1203	43	0.8965218	0.025747418	0.8965218	363.5512		10.440918	0.12406	0.0022712	0.0025986	NaN	67.154	84	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7969.5			14915	3866	8650	8828							0.061674866541807205
LPFLPSPGP	9	Unmodified	_LPFLPSPGP_					0	0	0			REV__ENST00000434618.6_1_6:33267742-33268024:-|nuORF	REV__ENST00000434618.6_1_6:33267742-33268024:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5189305714001	1	924.518931	923.511654	1.13	0.0010447	1.6984	0.0015702	2.8284	0.0026149	924.520176462919	34.516	0.07235	34.515	34.467	34.539	-0.0006485	312	58	1.433996	0.03383565	1.4324765	291.47427	0	6.877472						89	4	2	NaN	NaN	NaN	0.14301	1	6356	6356		29.598	1.8095	1	6685.4	+		14916	12167	8651	8829	11794	11794					0.046838743911848724
LPFLPSPGP	9	Unmodified						0	0	0			REV__ENST00000434618.6_1_6:33267742-33268024:-|nuORF	REV__ENST00000434618.6_1_6:33267742-33268024:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	924.518931	923.511654	1.13	0.0010447	1.6984	0.0015702	2.8284	0.0026149	924.520176462919	34.516	0.07235	34.515	34.467	34.539	-0.0006485	312	58	1.433996	0.03383565	1.4324765	291.47427		6.877472	0.011101	0.001022	-0.0025406	NaN	29.598	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6685.4	+		14917	12167	8651	8829							0.046838743911848724
LPFLSPSNL	9	Unmodified	_LPFLSPSNL_					0	0	0			REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF	REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.27911772395004	2	494.279118	986.543683	1.4024	0.00069318	-1.1833	-0.00058488	0.21911	0.0001083	494.27832981866095	22.91	0.24104	22.896	22.824	23.065	-0.01354	1308	79	0.83204526	0.04797715	0.8305259	337.92102	0	19.485107						529	11	4	NaN	NaN	NaN	0.11656	1	7942	7942		33.425	0.64729	1	220390	+		14918	12845	8652	8830	11795	11795					0.049872420743326984
LPFLTTEVNVL	11	Unmodified	_LPFLTTEVNVL_					0	0	0		ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF	ENST00000484157.5_1_1:155108136-155110067:+|nuORF	ENST00000484157.5_1_1:155108136-155110067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.3580963264501	2	623.358096	1244.70164	1.4286	0.00089056	-3.7331	-0.0023271	-2.3045	-0.0014365	623.3551361162693	34.469	0.072384	34.469	34.421	34.493	0	1170	43	0.91673553	0.025705755	0.91673553	371.25275	0	10.410126						97	4	3	NaN	NaN	NaN	0.37105	1	17636	17636		23.086	7.2639	1	9316.4			14919	7227	8653	8831	11796	11796					0.08907696542905796
LPFLVDLAL	9	Unmodified	_LPFLVDLAL_					0	0	0		ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENSG00000173064|ENST00000682272|HECTD4	ENST00000311694.7_1_12:112687934-112711582:-|nuORF	ENST00000311694.7_1_12:112687934-112711582:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.6077455787	1	1000.60775	999.600469	1.0166	0.0010173	1.2098	0.0012106	2.2265	0.0022278	1000.6101985716249	39.791	0.14472	39.791	39.742	39.887	0	153	46	1.5281296	0.026568055	1.5281296	310.26038	0	5.3941956						130	7	2	NaN	NaN	NaN	0.02781	1	8590	8590		61.977	23.059	1	10480			14920	4869	8654	8832	11797	11797					0.10065289630847474
LPFNWPTI	8	Unmodified	_LPFNWPTI_					0	0	0			REV__ENSG00000184254|ENST00000329841|ALDH1A3	REV__ENSG00000184254|ENST00000329841|ALDH1A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.26855303764995	2	494.268553	986.522553	1.5667	0.00077435	-4.3083	-0.0021294	-2.7416	-0.0013551	494.26663700429486	20.622	0.21688	20.622	20.573	20.79	0	1296	79	0.8394264	0.047992766	0.8394264	340.91885	0	19.491455						386	10	3	NaN	NaN	NaN	0.13059	1	8102	8102		58.235	2.8224	1	92267	+		14921	10915	8655	8833	11798	11798					0.028752767654623312
LPFNWPTI	8	Unmodified						0	0	0			REV__ENSG00000184254|ENST00000329841|ALDH1A3	REV__ENSG00000184254|ENST00000329841|ALDH1A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.268553	986.522553	1.5667	0.00077435	-4.3083	-0.0021294	-2.7416	-0.0013551	494.26663700429486	20.622	0.21688	20.622	20.573	20.79	0	1296	79	0.8394264	0.047992766	0.8394264	340.91885		19.491455	-0.017192	-0.00025827	0.00075972	NaN	58.235	386	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92267	+		14922	10915	8655	8833							0.028752767654623312
LPFPEVTL	8	Unmodified	_LPFPEVTL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	915.5185962204001	1	915.518596	914.51132	1.568	0.0014355	-0.94665	-0.00086667	0.62132	0.00056883	915.5176012544655	32.201	0.21719	32.201	32.128	32.345	0	318	115	1.4304334	0.06775427	1.4304334	290.7922	0	13.773712						499	10	4	NaN	NaN	NaN	0.050534	1	6314	6314		78.398	28.365	1	123210			14923	3802	8656	8834	11799	11799					0.050644546713328964
LPFPEVTL	8	Unmodified	_LPFPEVTL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.5185962204001	1	915.518596	914.51132	1.1558	0.0010581	-0.42837	-0.00039218	0.72738	0.00066593	915.518048348094	32.2	0.26546	32.196	32.075	32.341	-0.0037613	315	85	1.4322147	0.049892306	1.4306953	291.15433	0	10.142578						566	12	4	NaN	NaN	NaN	0.084194	1	6195	6195		68.108	4.7981	1	125480			14924	3802	8656	8834	11800	11800					0.050644546713328964
LPFPIPLW	8	Unmodified	_LPFPIPLW_					0	0	0		ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.79166399319996	2	491.791664	981.568775	2.1111	0.0010382	6.9283	0.0034073	9.0394	0.0044455	491.79570755113804	18.844	0.072001	18.844	18.82	18.892	0	1182	52	0.9093879	0.031229258	0.9093879	369.3581	0	12.684143						69	4	2	NaN	NaN	NaN	0.84651	1	7952	7952		1.6704	0.2308	1	5643.8			14925	6717	8657	8835	11801	11801					0.07725341667548946
LPFPIPLW	8	Unmodified						0	0	0		ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	491.791664	981.568775	1.4198	0.00069825	6.0585	0.0029795	7.4783	0.0036778	491.7947361235092	18.962	0.12008	18.948	18.924	19.044	-0.014059	1179	52	0.9112251	0.03122592	0.90970564	370.1043		12.682739	0.051719	-0.00055449	0.00015889	NaN	1.6704	83	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5563.1			14926	6717	8657	8835							0.07725341667548946
LPFPSNITL	9	Unmodified	_LPFPSNITL_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5666090455001	1	1001.56661	1000.55933	1.1579	0.0011598	-3.5136	-0.0035191	-2.3557	-0.0023594	1001.5630041689785	31.646	0.12069	31.646	31.597	31.718	0	216	88	1.4908947	0.05144143	1.4908947	302.69656	0	10.444183						209	6	2	NaN	NaN	NaN	0.19268	1	8623	8623		25.801	2.4665	1	21735			14927	2608	8658	8836	11802	11802					0.059075285913763764
LPFPSNITL	9	Unmodified	_LPFPSNITL_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5666090455001	1	1001.56661	1000.55933	0.77182	0.00077303	-2.4322	-0.002436	-1.6604	-0.001663	1001.562520892582	31.645	0.12066	31.64	31.592	31.712	-0.0044174	222	94	1.4873441	0.0549891	1.4858247	301.9757	0	11.164459						172	6	2	NaN	NaN	NaN	0.059222	1	8455	8455		42.995	9.5695	1	19555			14928	2608	8658	8836	11803	11803					0.059075285913763764
LPFRNDFAQP	10	Unmodified	_LPFRNDFAQP_					0	0	0		nc|ENSG00000171208|Q8NC67-2|NETO2;nc|ENSG00000171208|Q8NC67-3|NETO2;ENSG00000171208|ENST00000562435|NETO2	nc|ENSG00000171208|Q8NC67-2|NETO2	nc|ENSG00000171208|Q8NC67-2|NETO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.2084954697999	3	402.208495	1203.60366	2.4931	0.0010028	4.6281	0.0018615	7.1212	0.0028642	402.2103726760402	19.37	0.072071	19.356	19.332	19.404	-0.014141	1461	25	0.7376554	0.014848888	0.73613596	448.25885	0	9.023346						35	4	2	NaN	NaN	NaN	0.65442	1	15929	15929		6.1406	1.5973	1	2263.7			14929	4772	8659	8837	11804	11804					0.009999327375453504
LPFRNDFAQP	10	Unmodified						0	0	0		nc|ENSG00000171208|Q8NC67-2|NETO2;nc|ENSG00000171208|Q8NC67-3|NETO2;ENSG00000171208|ENST00000562435|NETO2	nc|ENSG00000171208|Q8NC67-2|NETO2	nc|ENSG00000171208|Q8NC67-2|NETO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	402.208495	1203.60366	1.5076	0.00060638	10.185	0.0040963	11.692	0.0047027	402.213544086851	19.252	0.048006	19.252	19.252	19.3	0	1464	28	0.73579943	0.016704082	0.73579943	447.13095		10.150696	-0.051997	0.0047971	-0.00016828	NaN	6.1406	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205.4			14930	4772	8659	8837							0.009999327375453504
LPFSAGPTDVL	11	Unmodified	_LPFSAGPTDVL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.5935520775	1	1116.59355	1115.58628	2.0854	0.0023285	-1.7135	-0.0019132	0.37194	0.00041531	1116.59254743758	29.811	0.096561	29.811	29.787	29.884	0	69	49	1.5776473	0.028257012	1.5776473	319.86075	0	5.7289734						81	5	2	NaN	NaN	NaN	0.046084	1	13507	13507		50.831	29.06	1	5753.4			14931	1414	8660	8838	11805	11805					0.033105924118899566
LPFSAGPTDVL	11	Unmodified						0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1116.59355	1115.58628	1.3996	0.0015627	-2.4295	-0.0027127	-1.0299	-0.00115	1116.588539908689	29.786	0.096516	29.779	29.779	29.876	-0.0070648	75	49	1.5741152	0.028253913	1.5725957	319.14462		5.7283325	-0.016045	-0.00043781	-0.0025258	NaN	50.831	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5823.2			14932	1414	8660	8838							0.033105924118899566
LPFSDQVVL	9	Unmodified	_LPFSDQVVL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5615236676	1	1017.56152	1016.55425	2.5808	0.0026261	-5.0956	-0.0051851	-2.5148	-0.002559	1017.559585345514	30.246	0.19306	30.246	30.149	30.342	0	195	88	1.5033154	0.051457763	1.5033154	305.1531	0	10.445251						503	9	4	NaN	NaN	NaN	0.036546	1	9242	9242		52.624	7.9856	1	71199			14933	2351	8661	8839	11806	11806					0.04663224728756177
LPFSGYFEH	9	Unmodified	_LPFSGYFEH_					0	0	0		ENST00000493521.5_1_3:181457683-181457800:+|nuORF	ENST00000493521.5_1_3:181457683-181457800:+|nuORF	ENST00000493521.5_1_3:181457683-181457800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7585494573501	2	548.758549	1095.50255	0.74425	0.00040841	-5.5787	-0.0030614	-4.8344	-0.0026529	548.7547965600827	34.975	0.16878	34.975	34.927	35.096	0	1251	130	0.8670771	0.07920545	0.8670771	351.6666	0	32.12393						292	8	2	NaN	NaN	NaN	0.36492	1	12635	12635		15.175	4.5704	1	23930			14934	7276	8662	8840	11807	11807					-0.04138518965123694
LPFSIDPYL	9	Unmodified	_LPFSIDPYL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5662746944997	1	1064.56627	1063.559	1.2983	0.0013822	0.77614	0.00082626	2.0745	0.0022084	1064.5671943977654	34.059	0.096588	34.059	34.01	34.107	0	114	109	1.5511382	0.06366575	1.5511382	314.67416	0	12.915649						167	5	2	NaN	NaN	NaN	0.014046	1	11290	11290		80.639	6.3067	1	30992			14935	989;7799	8663	8841	11808	11808					0.029761088715076767
LPFSIDPYL	9	Unmodified	_LPFSIDPYL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5662746944997	1	1064.56627	1063.559	0.93124	0.00099136	1.5944	0.0016973	2.5256	0.0026887	1064.5682803898455	34.058	0.096584	34.056	34.008	34.105	-0.0012474	114	88	1.5511382	0.05127263	1.5496187	314.67416	0	10.40152						161	5	2	NaN	NaN	NaN	0.021105	1	11025	11025		70.6	28.815	1	28527			14936	989;7799	8663	8841	11809	11809					0.029761088715076767
LPFYLEVGL	9	Unmodified	_LPFYLEVGL_					0	0	0		nc|ENSG00000129159|P48547|KCNC1;nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;nc|ENSG00000166006|Q96PR1-5|KCNC2;ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000166006|Q96PR1-2|KCNC2;nc|ENSG00000116396|Q03721|KCNC4;ENSG00000166006|ENST00000549446|KCNC2;ENSG00000131398|ENST00000477616|KCNC3	nc|ENSG00000129159|P48547|KCNC1	nc|ENSG00000129159|P48547|KCNC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5870101366	1	1050.58701	1049.57973	1.3627	0.0014316	-2.7788	-0.0029194	-1.4161	-0.0014878	1050.5856630684966	35.361	0.16884	35.361	35.313	35.482	0	132	91	1.5405227	0.053066015	1.5405227	312.57394	0	10.767151						260	8	2	NaN	NaN	NaN	0.078597	1	10627	10627		38.918	2.3314	1	30018			14937	2079	8664	8842	11810	11810					0.056926992511762364
LPFYLEVGL	9	Unmodified	_LPFYLEVGL_					0	0	0		nc|ENSG00000129159|P48547|KCNC1;nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;nc|ENSG00000166006|Q96PR1-5|KCNC2;ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000166006|Q96PR1-2|KCNC2;nc|ENSG00000116396|Q03721|KCNC4;ENSG00000166006|ENST00000549446|KCNC2;ENSG00000131398|ENST00000477616|KCNC3	nc|ENSG00000129159|P48547|KCNC1	nc|ENSG00000129159|P48547|KCNC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5870101366	1	1050.58701	1049.57973	0.99703	0.0010475	-2.0744	-0.0021794	-1.0774	-0.0011319	1050.5858105192326	35.36	0.19291	35.361	35.288	35.481	0.00053024	132	94	1.5405227	0.0548203	1.5390033	312.57394	0	11.123108						325	9	3	NaN	NaN	NaN	0.10956	1	10408	10408		34.439	9.4778	1	30949			14938	2079	8664	8842	11811	11811					0.056926992511762364
LPGAHGGG	8	Unmodified	_LPGAHGGG_					0	0	0		ENST00000344450.9_1_6:292224-292323:+|nuORF	ENST00000344450.9_1_6:292224-292323:+|nuORF	ENST00000344450.9_1_6:292224-292323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.1719129982501	2	333.171913	664.329273	1.1968	0.00039875	6.3474	0.0021148	7.5442	0.0025135	333.1740253945451	35.239	0.21725	35.239	35.167	35.384	-4.1962E-05	1515	67	0.7042165	0.040914237	0.70269704	287.90472	0	16.726929						247	10	2	NaN	NaN	NaN	0.84651	1	2348	2348		1.6704	0	1	26863			14939	6551	8665	8843	11812	11812					-0.016318402308911573
LPGAHGPP	8	Unmodified	_LPGAHGPP_					0	0	0		ENSG00000171812|ENST00000397799|COL8A2	ENSG00000171812|ENST00000397799|COL8A2	ENSG00000171812|ENST00000397799|COL8A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3991497867001	1	745.39915	744.391873	0.65174	0.00048581	7.7813	0.0058001	8.433	0.0062859	745.4045015335569	43.511	0.2639	43.522	43.45	43.714	0.01099	513	85	1.3142352	0.050238848	1.3127158	268.0739	0	10.247589						437	12	3	NaN	NaN	NaN	0.84876	1	3895	3895		0.39566	0	1	49774			14940	4808	8666	8844	11813	11813					0.009453058372855594
LPGALPDP	8	Unmodified	_LPGALPDP_					0	0	0		ENST00000369014.9_1_1:150595095-150595323:-|nuORF	ENST00000369014.9_1_1:150595095-150595323:-|nuORF	ENST00000369014.9_1_1:150595095-150595323:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	779.4297812131	1	779.429781	778.422505	2.8893	0.002252	-3.8716	-0.0030177	-0.98234	-0.00076566	779.4251195975007	26.118	0.048288	26.107	26.107	26.156	-0.011137	510	37	1.316029	0.021524072	1.3145095	268.2275	0	4.3869324						44	3	2	NaN	NaN	NaN	0.80071	1	4396	4396		9.1232	0	1	3215.8			14941	6636	8667	8845	11814	11814					0.024430394316595994
LPGAPANF	8	Unmodified	_LPGAPANF_					0	0	0		nc|ENSG00000137204|Q9Y694-3|SLC22A7;nc|ENSG00000137204|Q9Y694-2|SLC22A7;ENSG00000137204|ENST00000372585|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4144654999001	1	786.414465	785.407189	1.4313	0.0011256	4.6474	0.0036548	6.0787	0.0047804	786.4183739152722	34.926	0.14473	34.926	34.877	35.022	-4.5776E-05	498	73	1.3232021	0.043011427	1.3216827	269.64792	0	8.765045						181	7	2	NaN	NaN	NaN	0.82332	1	4487	4487		6.0903	0	1	14646			14942	3075	8668	8846	11815	11815					0.005901726344745839
LPGAVHFLPL	10	Unmodified	_LPGAVHFLPL_					0	0	0		nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	nc|ENSG00000164053|Q8WXE1-5|ATRIP	nc|ENSG00000164053|Q8WXE1-5|ATRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.3185772354501	2	532.318577	1062.6226	0.59331	0.00031583	-1.387	-0.00073831	-0.79366	-0.00042248	532.3182053990978	30.655	0.12066	30.649	30.601	30.722	-0.0057545	1254	97	0.8652351	0.058895826	0.86371565	351.05435	0	23.895966						158	6	3	NaN	NaN	NaN	0.6337	1	10998	10998		12.588	7.122	1	16469			14943	4287	8669	8847	11816	11816					0.0937951409928246
LPGEDWVF	8	Unmodified	_LPGEDWVF_					0	0	0		ENST00000531006.1_1_8:144698735-144699659:-|nuORF;ENST00000529899.1_1_8:144698125-144699659:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENSG00000104522|ENST00000425753|GFUS	ENST00000531006.1_1_8:144698735-144699659:-|nuORF	ENST00000531006.1_1_8:144698735-144699659:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4618096230001	1	962.46181	961.454533	1.0055	0.00096779	0.4814	0.00046333	1.4869	0.0014311	962.4629665132036	31.694	0.21724	31.694	31.646	31.863	0	312	106	1.433996	0.062295914	1.433996	291.30527	0	12.654938						464	10	3	NaN	NaN	NaN	0.62311	1	7360	7360		23.85	0	1	58508			14944	1480	8670	8848	11817	11817					-0.02773592885182552
LPGEDWVF	8	Unmodified	_LPGEDWVF_					0	0	0		ENST00000531006.1_1_8:144698735-144699659:-|nuORF;ENST00000529899.1_1_8:144698125-144699659:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENSG00000104522|ENST00000425753|GFUS	ENST00000531006.1_1_8:144698735-144699659:-|nuORF	ENST00000531006.1_1_8:144698735-144699659:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4618096230001	1	962.46181	961.454533	0.69487	0.00066879	0.017551	1.6892E-05	0.71242	0.00068568	962.4618496887153	31.693	0.26551	31.688	31.616	31.881	-0.0044174	312	103	1.433996	0.06051278	1.4324765	291.30527	0	12.292694						496	12	3	NaN	NaN	NaN	0.40747	1	7213	7213		36.036	7.3698	1	60982			14945	1480	8670	8848	11818	11818					-0.02773592885182552
LPGFVICQI	9	Unmodified	_LPGFVICQI_					0	0	0			REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	REV__ENST00000568657.1_1_16:56442078-56458825:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.5488504913	1	989.54885	988.541574	1.1422	0.0011303	0.19864	0.00019656	1.3408	0.0013268	989.5495034533185	38.564	0.072121	38.564	38.54	38.612	0	213	46	1.4926696	0.026627302	1.4926696	303.107	0	5.4070435						85	4	2	NaN	NaN	NaN	0.48931	1	8169	8169		10.052	0	1	5534.5	+		14946	10185	8671	8849	11819	11819					0.046844900648579824
LPGGPGGPG	9	Unmodified	_LPGGPGGPG_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073001	1	708.367515	707.360239	1.6966	0.0012018	-1.1383	-0.00080634	0.55828	0.00039547	708.3668268656168	18.074	0.144	18.06	18.012	18.156	-0.013786	1386	43	0.78399014	0.025912344	0.7824707	160.06741	0	5.290512						135	7	2	NaN	NaN	NaN	0.6762	1	3294	3294		1.2418	0	1	17717			14947	1538	8672	8850	11820	11820					-0.005146869166651413
LPGGPGGPG	9	Unmodified						0	0	0		ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.367515	707.360239	1.6797	0.0011898	-1.1485	-0.00081358	0.53118	0.00037627	708.3664757022315	18.029	0.11991	18.029	18.005	18.125	0	1386	40	0.78399014	0.02406013	0.78399014	160.06741		4.9123535	-0.015586	-5.4141E-06	0.00075972	NaN	1.2418	130	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16597			14948	1538	8672	8850							-0.005146869166651413
LPGGSAEQ	8	Unmodified	_LPGGSAEQ_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.3679092378001	1	758.367909	757.360633	1.7061	0.0012939	4.5591	0.0034575	6.2652	0.0047514	758.3713739186145	27.664	0.31368	27.664	27.567	27.881	0	564	73	1.2837118	0.043135524	1.2837118	261.76675	0	8.795959						512	14	4	NaN	NaN	NaN	0.65075	1	4184	4184		22.126	0	1	77472			14949	5474	8673	8851	11821	11821					-0.027753119874660115
LPGGSAEQ	8	Unmodified						0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	758.367909	757.360633	1.3883	0.0010528	5.4573	0.0041386	6.8456	0.0051915	758.3721021155064	27.687	0.33786	27.677	27.581	27.919	-0.009552	561	82	1.2855089	0.048535347	1.2839894	262.13318		9.897034	0.0068838	0.00033721	0.00013879	NaN	22.126	497	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77346			14950	5474	8673	8851							-0.027753119874660115
LPGGTGIILL	10	Unmodified	_LPGGTGIILL_					0	0	0		ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.30513550920006	2	477.305136	952.595718	1.2179	0.00058132	-1.9298	-0.00092111	-0.71189	-0.00033979	477.304030152358	24.212	0.096529	24.199	24.175	24.272	-0.012749	1338	40	0.81357855	0.02402109	0.8120591	330.58295	0	9.760529						85	5	2	NaN	NaN	NaN	0.33935	1	7017	7017		26.115	5.6663	1	12714			14951	7052	8674	8852	11822	11822					0.11752405488095974
LPGGTGIILL	10	Unmodified						0	0	0		ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.305136	952.595718	1.2352	0.00058959	-1.2393	-0.00059152	-0.0040597	-1.9377E-06	477.30421335108736	24.188	0.12069	24.188	24.14	24.261	0	1338	34	0.81357855	0.020325482	0.81357855	330.58295		8.258911	-0.0055573	0.00024662	0.00075972	NaN	26.115	111	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15051			14952	7052	8674	8852							0.11752405488095974
LPGIDWLL	8	Unmodified	_LPGIDWLL_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000529254.1_1_11:64789111-64789324:+|nuORF	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.5345806356	1	926.534581	925.527304	0.76915	0.00071264	0.83069	0.00076966	1.5998	0.0014823	926.5354578097584	37.6	0.16847	37.603	37.555	37.723	0.0028267	315	82	1.4322147	0.048061848	1.4306953	291.10294	0	9.768768						251	8	3	NaN	NaN	NaN	0.30832	1	6381	6381		41.46	7.7618	1	18628			14953	5958	8675	8853	11823	11823					0.06156160908221864
LPGLDSGGIG	10	Unmodified	_LPGLDSGGIG_					0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4676232824002	1	885.467623	884.460347	2.0346	0.0018016	2.406	0.0021304	4.4406	0.003932	885.4697774131103	21.874	0.048229	21.874	21.85	21.898	0	381	55	1.3929803	0.032148838	1.3929803	283.32098	0	6.538788						69	3	2	NaN	NaN	NaN	0.29898	1	5863	5863		27.789	0	1	6067.1	+	+	14954	13001	8676	8854	11824	11824					0.013495056264900995
LPGLDSGGIG	10	Unmodified						0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	885.467623	884.460347	2.0346	0.0018016	2.406	0.0021304	4.4406	0.003932	885.4697774131103	21.874	0.048229	21.874	21.85	21.898	0	381	55	1.3929803	0.032148838	1.3929803	283.32098		6.538788	0.019059	-5.5816E-05	0.00075972	NaN	27.789	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6067.1	+	+	14955	13001	8676	8854							0.013495056264900995
LPGLDSGGIG	10	Unmodified						0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	885.467623	884.460347	1.7538	0.001553	2.6448	0.0023419	4.3986	0.0038948	885.4699522455359	21.85	0.096365	21.836	21.836	21.932	-0.013895	381	58	1.3929803	0.033933043	1.3914609	283.32098		6.901703	-0.019059	0.00015562	-0.00075972	NaN	27.789	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6843.9	+	+	14956	13001	8676	8854							0.013495056264900995
LPGLEQVL	8	Unmodified	_LPGLEQVL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.5138451935001	1	868.513845	867.506569	1.4322	0.0012439	-0.69088	-0.00060004	0.74128	0.00064381	868.5132335992391	29.474	0.16896	29.474	29.377	29.546	0	426	46	1.3661768	0.026826382	1.3661768	277.95255	0	5.4578857						134	8	2	NaN	NaN	NaN	0.13059	1	5636	5636		58.235	8.4026	1	11878			14957	13662	8677	8855	11825	11825					0.06751570528570028
LPGLEQVL	8	Unmodified						0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	868.513845	867.506569	0.95941	0.00083326	0.67482	0.00058609	1.6342	0.0014194	868.5144771918177	29.473	0.16891	29.466	29.345	29.514	-0.0070667	423	49	1.3679651	0.02861011	1.3664457	278.31638		5.8208313	-0.0039165	0.00070165	0.0001344	NaN	58.235	145	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13514			14958	13662	8677	8855							0.06751570528570028
LPGLETVEM	9	Unmodified	_LPGLETVEM_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5019598782001	1	988.50196	987.494683	2.0344	0.002011	-1.5785	-0.0015603	0.45593	0.00045069	988.5012523632496	27.591	0.12067	27.591	27.543	27.664	0	234	64	1.4802408	0.037302017	1.4802408	300.58755	0	7.574829						260	6	4	NaN	NaN	NaN	0.032764	1	8121	8121		55.494	18.907	1	60100			14959	902	8678	8856	11826	11826					0.00043585723074102134
LPGLETVEM	9	Unmodified	_LPGLETVEM_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5019598782001	1	988.50196	987.494683	1.4236	0.0014072	-1.0783	-0.0010659	0.34525	0.00034128	988.5021464018448	27.59	0.12067	27.581	27.533	27.653	-0.009552	234	85	1.4802408	0.049749374	1.4787214	300.58755	0	10.102417						265	6	5	NaN	NaN	NaN	0.030391	1	7958	7958		58.599	14.297	1	59740			14960	902	8678	8856	11827	11827					0.00043585723074102134
LPGLETVEM	9	Oxidation (M)	_LPGLETVEM(Oxidation (M))_		LPGLETVEM(1)		LPGLETVEM(87)	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4968745003001	1	1004.49687	1003.4896	1.9793	0.0019882	-1.2914	-0.0012972	0.68791	0.000691	1004.4963364976827	23.682	0.16875	23.682	23.61	23.778	0	264	106	1.4624695	0.06220317	1.4624695	296.9136	0	12.628632						408	8	3	NaN	NaN	NaN	0.011942	1	8720	8720		87.021	45.236	1	49140			14961	902	8678	8857	11828	11828		97			-0.012007181395460975
LPGLETVEM	9	Oxidation (M)	_LPGLETVEM(Oxidation (M))_		LPGLETVEM(1)		LPGLETVEM(81)	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4968745003001	1	1004.49687	1003.4896	1.9338	0.0019425	-0.74393	-0.00074728	1.1898	0.0011952	1004.4967649822262	23.706	0.1445	23.693	23.621	23.765	-0.013048	261	103	1.4642475	0.060429215	1.462728	297.27457	0	12.268463						385	7	3	NaN	NaN	NaN	0.014046	1	8546	8546		80.639	36	1	48773			14962	902	8678	8857	11829	11829		97			-0.012007181395460975
LPGLRDLVL	9	Unmodified	_LPGLRDLVL_					0	0	0		nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121878388-121880774:-|nuORF	nc|ENSG00000089094|Q8NHM5-4|KDM2B	nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.3160345465	2	498.316035	994.617516	2.0409	0.001017	-0.73929	-0.0003684	1.3016	0.00064862	498.31584077352034	25.708	0.072359	25.708	25.684	25.757	0	1293	43	0.84127116	0.02582264	0.84127116	341.62982	0	10.486267						109	4	4	NaN	NaN	NaN	0.33202	1	8383	8383		16.858	1.6829	1	14984			14963	1032	8679	8858	11830	11830					0.11999210236660929
LPGPGDLSF	9	Unmodified	_LPGPGDLSF_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B;FAM222B|p.P441Hfs*70|1|0.29|ENSG00000173065|chr17:28758637-28758637|G/-|frameshift_variant	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4618096230001	1	902.46181	901.454533	1.9197	0.0017325	0.27648	0.00024951	2.1962	0.001982	902.4624883175239	28.315	0.096504	28.315	28.291	28.388	0	360	46	1.405474	0.026769161	1.405474	285.77957	0	5.4430847						91	5	2	NaN	NaN	NaN	0.12328	1	6104	6104		32.453	2.8544	1	5969.1			14964	4870	8680	8859	11831	11831					-0.00013592885181878955
LPGPGSLVPL	10	Unmodified	_LPGPGSLVPL_					0	0	0			REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.289485445	2	475.289485	948.564418	0.73991	0.00035167	-0.76828	-0.00036516	-0.028375	-1.3486E-05	475.28944997660545	20.453	0.12034	20.439	20.391	20.511	-0.014143	1353	58	0.8043377	0.035119116	0.80281824	326.84784	0	14.270874						175	6	2	NaN	NaN	NaN	0.47601	1	6925	6925		20.449	2.4142	1	21633	+		14965	11457	8681	8860	11832	11832					0.08807832453999254
LPGPGSLVPL	10	Unmodified						0	0	0			REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	REV__ENST00000395621.7_1_22:51065986-51066424:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	475.289485	948.564418	0.73991	0.00035167	-0.76828	-0.00036516	-0.028375	-1.3486E-05	475.28944997660545	20.453	0.12034	20.439	20.391	20.511	-0.014143	1353	58	0.8043377	0.035119116	0.80281824	326.84784		14.270874	-0.0069811	0.000566	-0.001684	NaN	20.449	175	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21633	+		14966	11457	8681	8860							0.08807832453999254
LPGSQEAG	8	Unmodified	_LPGSQEAG_					0	0	0			REV__ENST00000585857.1_1_16:4910827-4920335:+|nuORF	REV__ENST00000585857.1_1_16:4910827-4920335:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.3679092378001	1	758.367909	757.360633	1.3883	0.0010528	5.4573	0.0041386	6.8456	0.0051915	758.3721021155064	27.687	0.33786	27.677	27.581	27.919	-0.009552	561	82	1.2855089	0.048535347	1.2839894	262.13318	0	9.897034						497	15	3	NaN	NaN	NaN	0.67593	1	4106	4106		20.555	0	1	77346	+		14967	12882	8682	8861	11833	11833					-0.027753119874660115
LPGSSDLLI	9	Unmodified	_LPGSSDLLI_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5193245019001	1	914.519325	913.512048	1.4372	0.0013144	-7.564	-0.0069174	-6.1267	-0.005603	914.5122316736321	27.204	0.24131	27.194	27.122	27.363	-0.010126	348	94	1.412609	0.055264354	1.4110895	287.17337	0	11.234833						352	11	2	NaN	NaN	NaN	0.056143	1	6178	6178		44.302	2.5178	1	85313	+		14968	11266	8683	8862	11834	11834					0.05183249320384675
LPGSSDLLI	9	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	914.519325	913.512048	1.6626	0.0015205	-8.2759	-0.0075685	-6.6133	-0.006048	914.5132478884606	27.181	0.21715	27.181	27.109	27.326	0	348	100	1.412609	0.058835983	1.412609	287.17337		11.960968	-0.0066254	-0.00030764	0.00075972	NaN	44.302	341	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75496	+		14969	11266	8683	8862							0.05183249320384675
LPGSSDLLI	9	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	914.519325	913.512048	1.4372	0.0013144	-7.564	-0.0069174	-6.1267	-0.005603	914.5122316736321	27.204	0.24131	27.194	27.122	27.363	-0.010126	348	94	1.412609	0.055264354	1.4110895	287.17337		11.234833	0.0066254	0.00034346	-0.00075972	NaN	44.302	352	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85313	+		14970	11266	8683	8862							0.05183249320384675
LPGSSHLSLL	10	Unmodified	_LPGSSHLSLL_					0	0	0		ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2952991044001	2	512.295299	1022.57605	1.9586	0.0010034	-2.22	-0.0011373	-0.26145	-0.00013394	512.2938273882171	15.844	0.1437	15.831	15.759	15.903	-0.012611	1305	64	0.83389086	0.038731933	0.8323714	338.50644	0	15.722687						96	7	2	NaN	NaN	NaN	0.73444	1	9282	9282		5.6942	0.2283	1	7778			14971	6640	8684	8863	11835	11835					0.06566029477335178
LPGYCCDNVIC	11	Unmodified	_LPGYCCDNVIC_					0	0	0			REV__nc|ENSG00000186073|Q9Y2V0-2|CDIN1	REV__nc|ENSG00000186073|Q9Y2V0-2|CDIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2483197615	2	600.24832	1198.48209	1.5651	0.00093946	-8.7479	-0.0052509	-7.1828	-0.0043114	600.2420573564746	25.202	0.31368	25.202	25.009	25.322	0	1167	100	0.91857195	0.060647786	0.91857195	372.1538	0	24.571075						515	14	3	NaN	NaN	NaN	0.69801	1	16404	16404		7.5876	0.72439	1	62732	+		14972	10987	8685	8864	11836	11836					-0.10921517003134795
LPHAGSPA	8	Unmodified	_LPHAGSPA_					0	0	0		ENST00000583222.1_1_17:8819682-8820027:-|nuORF	ENST00000583222.1_1_17:8819682-8820027:-|nuORF	ENST00000583222.1_1_17:8819682-8820027:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3940644088	1	749.394064	748.386788	0.81908	0.00061382	-5.4735	-0.0041018	-4.6544	-0.003488	749.3903225765431	31.838	0.1689	31.833	31.785	31.954	-0.0044155	543	52	1.296287	0.030529857	1.2947675	264.38742	0	6.2268066						183	8	2	NaN	NaN	NaN	0.77489	1	3948	3948		12.588	0	1	22864			14973	7687	8686	8865	11837	11837					0.0025300197465867313
LPHALLAVL	9	Unmodified	_LPHALLAVL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;ABCC10|p.A144Lfs*4|1|0.19|ENSG00000124574|chr6:43432410-43432410|G/-|frameshift_variant	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.8078453736501	2	473.807845	945.601138	0.34511	0.00016351	-0.98784	-0.00046805	-0.64273	-0.00030453	473.80728973236387	28.435	0.12066	28.426	28.402	28.523	-0.0089798	1287	49	0.8449601	0.02951163	0.84344065	343.3704	0	11.992798						131	6	2	NaN	NaN	NaN	0.36886	1	6846	6846		15.013	4.9613	1	16635			14974	2425	8687	8866	11838	11838					0.1261612907056815
LPHAVQETF	9	Unmodified	_LPHAVQETF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2718240081	2	521.271824	1040.5291	1.6139	0.00084126	-5.4641	-0.0028483	-3.8502	-0.002007	521.2693796325109	19.3	0.23993	19.3	19.156	19.396	0	1272	76	0.854179	0.04610449	0.854179	346.6627	0	18.711182						233	11	2	NaN	NaN	NaN	0.18779	1	10235	10235		26.115	4.28	1	28228			14975	7828;7829	8688	8867	11839	11839					0.010451699261693648
LPHAVQETF	9	Unmodified						0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion;ITM2B-RB1|3|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.271824	1040.5291	1.5006	0.00078223	-5.2524	-0.0027379	-3.7518	-0.0019557	521.2699587455529	19.346	0.21626	19.332	19.188	19.404	-0.014141	1305	82	0.83389086	0.04979825	0.8323714	338.42886		20.210266	0.015987	0.00010448	-0.010904	NaN	26.115	234	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23738			14976	7828;7829	8688	8867							0.010451699261693648
LPHDPTADVF	10	Unmodified	_LPHDPTADVF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2745636623	2	556.274564	1110.53457	1.5399	0.0008566	-1.0241	-0.00056967	0.5158	0.00028693	556.2740146711382	22.019	0.12048	22.019	21.97	22.091	0	1251	70	0.8670771	0.04235655	0.8670771	351.60742	0	17.175964						192	6	3	NaN	NaN	NaN	0.44258	1	13297	13297		21.835	5.2508	1	32979			14977	1916	8689	8868	11840	11840					-0.016271512820139833
LPHDPTADVF	10	Unmodified						0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.274564	1110.53457	1.1937	0.00066404	-1.1095	-0.00061719	0.084223	4.6851E-05	556.2739367892049	22.018	0.16856	22.004	21.908	22.077	-0.013895	1251	52	0.8670771	0.03131038	0.8655577	351.60742		12.696625	-0.0070688	-3.6363E-05	-0.00075972	NaN	21.835	208	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29300			14978	1916	8689	8868							-0.016271512820139833
LPHEELLL	8	Unmodified	_LPHEELLL_					0	0	0		ENST00000527679.5_1_11:62434908-62439046:-|nuORF;ENSG00000162194|ENST00000354588|LBHD1;nc|ENSG00000162194|Q9BQE6|LBHD1	ENST00000527679.5_1_11:62434908-62439046:-|nuORF	ENST00000527679.5_1_11:62434908-62439046:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.27911772395004	2	482.279118	962.543683	2.0508	0.00098906	-3.1716	-0.0015296	-1.1208	-0.00054052	482.27731668675585	22.959	0.12039	22.959	22.911	23.031	0	1341	61	0.8117308	0.036949456	0.8117308	329.78363	0	15.011566						135	6	2	NaN	NaN	NaN	0.45125	1	7412	7412		33.698	2.9072	1	21576			14979	4121	8690	8869	11841	11841					0.06091242074330694
LPHELVLVL	9	Unmodified	_LPHELVLVL_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.8262350920501	2	516.826235	1031.63792	1.0084	0.00052117	-0.89712	-0.00046365	0.11129	5.752E-05	516.8258178076011	29.111	0.14484	29.103	29.055	29.2	-0.0077209	1239	64	0.87444305	0.038648307	0.8729236	354.9266	0	15.68689						225	7	3	NaN	NaN	NaN	0.078597	1	9660	9660		38.918	10.251	1	30100			14980	671	8691	8870	11842	11842					0.12336380896454102
LPHELVLVL	9	Unmodified						0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.826235	1031.63792	1.6645	0.00086024	-2.0466	-0.0010577	-0.38212	-0.00019749	516.8250835598318	29.087	0.16891	29.087	29.039	29.208	0	1242	67	0.87260187	0.040495276	0.87260187	354.1793		16.436554	-0.0078101	-0.00059529	-0.00016088	NaN	38.918	239	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32306			14981	671	8691	8870							0.12336380896454102
LPHISDVVL	9	Unmodified	_LPHISDVVL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.79239227470003	2	496.792392	991.570232	2.1251	0.0010557	-3.697	-0.0018366	-1.5719	-0.00078089	496.7910865126984	25.66	0.24125	25.66	25.491	25.732	0	1290	64	0.84311575	0.038736105	0.84311575	342.39325	0	15.7309265						229	11	3	NaN	NaN	NaN	0.12945	1	8292	8292		31.561	0	1	41423			14982	1977	8692	8871	11843	11843					0.07410930965670559
LPHISDVVL	9	Unmodified						0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.792392	991.570232	1.66	0.00082468	-1.6983	-0.00084368	-0.038233	-1.8994E-05	496.7921330742105	25.684	0.19296	25.672	25.576	25.769	-0.0116	1290	61	0.84311575	0.036889493	0.8415963	342.39322		14.981018	0.006133	0.00080713	-0.00075972	NaN	31.561	290	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43506			14983	1977	8692	8871							0.07410930965670559
LPHLEAVVI	9	Unmodified	_LPHLEAVVI_					0	0	0		nc|ENSG00000137074|Q7Z2E3-12|APTX;nc|ENSG00000137074|Q7Z2E3-13|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-5|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-10|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX	nc|ENSG00000137074|Q7Z2E3-12|APTX	nc|ENSG00000137074|Q7Z2E3-12|APTX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.80275999575	2	495.80276	989.590967	2.0097	0.00099643	-2.8805	-0.0014282	-0.87079	-0.00043174	495.8010572488914	26.36	0.14482	26.36	26.288	26.432	0	1293	73	0.84127116	0.04428661	0.84127116	341.6535	0	17.985504						223	7	3	NaN	NaN	NaN	0.11467	1	8218	8218		33.698	5.0318	1	32514			14984	3066	8693	8872	11844	11844					0.09575521345323068
LPHSGEAQL	9	Unmodified	_LPHSGEAQL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.24834891179995	2	476.248349	950.482145	1.6593	0.00079024	-1.0623	-0.00050593	0.59698	0.00028431	476.24767043589225	15.39	0.21624	15.39	15.342	15.558	0	1332	61	0.8172735	0.03695345	0.8172735	332.09482	0	15.015869						360	10	4	NaN	NaN	NaN	0.12328	1	7098	7098		32.453	10.618	1	92522			14985	4982	8694	8873	11845	11845					0.004923103750343216
LPHTDFTL	8	Unmodified	_LPHTDFTL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.2478175955501	2	472.247818	942.481082	2.1356	0.0010085	-2.4692	-0.0011661	-0.33359	-0.00015753	472.2466452964444	23.152	0.21699	23.152	23.103	23.32	0	1308	76	0.83204526	0.046159327	0.83204526	338.13818	0	18.75888						492	10	4	NaN	NaN	NaN	0.23746	1	6874	6874		47.04	5.5801	1	329520			14986	5137	8695	8874	11846	11846					0.007540960061533042
LPHVDQVTL	9	Unmodified	_LPHVDQVTL_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.2874740723001	2	511.287474	1020.5604	1.0035	0.00051306	-4.2626	-0.0021794	-3.2591	-0.0016664	511.287044200902	22.308	0.096371	22.294	22.246	22.342	-0.013731	1278	55	0.85049206	0.033196986	0.8489726	345.25452	0	13.476227						130	5	3	NaN	NaN	NaN	0.21199	1	9208	9208		24.562	2.4357	1	12428			14987	4299	8696	8875	11847	11847					0.050937429602981865
LPIAALSANRR	11	Unmodified	_LPIAALSANRR_					0	0	0			REV__ENST00000535366.5_1_12:7024555-7024630:+|nuORF	REV__ENST00000535366.5_1_12:7024555-7024630:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.3592963446999	2	591.359296	1180.70404	0.82126	0.00048566	1.7751	0.0010497	2.5964	0.0015354	591.3606298910543	39.093	0.16893	39.093	39.068	39.237	0	1179	133	0.9112251	0.080824494	0.9112251	369.2405	0	32.75116						535	8	5	NaN	NaN	NaN	0.76975	1	15857	15857		5.1889	3.6835	1	131130	+		14988	12674	8697	8876	11848	11848					0.1209158979120275
LPIATVEEL	9	Unmodified	_LPIATVEEL_					0	0	0		nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5611893166	1	984.561189	983.553913	2.1322	0.0020993	1.8809	0.0018519	4.0131	0.0039512	984.5636563561042	28.146	0.072382	28.146	28.122	28.194	0	240	82	1.4766881	0.047985315	1.4766881	299.88263	0	9.744751						164	4	3	NaN	NaN	NaN	0.094712	1	8015	8015		36.586	7.9199	1	18559			14989	2670	8698	8877	11849	11849					0.06147805008902196
LPIATVEEL	9	Unmodified	_LPIATVEEL_					0	0	0		nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5611893166	1	984.561189	983.553913	1.4005	0.0013789	2.212	0.0021778	3.6125	0.0035567	984.5637521699267	28.17	0.072422	28.161	28.137	28.209	-0.0089779	234	73	1.4802408	0.042646766	1.4787214	300.6041	0	8.660614						170	4	3	NaN	NaN	NaN	0.29681	1	7842	7842		19.118	0	1	19759			14990	2670	8698	8877	11850	11850					0.06147805008902196
LPIDDVLR	8	Unmodified	_LPIDDVLR_					0	0	0		nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000459840.5_1_3:3192551-3196584:-|nuORF	nc|ENSG00000113851|Q96SW2-2|CRBN	nc|ENSG00000113851|Q96SW2-2|CRBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.77674221049995	2	470.776742	939.538931	1.3343	0.00062814	-8.4066	-0.0039576	-7.0723	-0.0033295	470.7729761399609	55.893	0.12006	55.893	55.845	55.965	0	1353	31	0.8043377	0.018486738	0.8043377	326.8927	0	7.5132446						96	6	3	NaN	NaN	NaN	0.82797	1	6818	6818		5.4659	0	1	7062.8			14991	1935	8699	8878	11851	11851					0.06674357931558461
LPIDGANDL	9	Unmodified	_LPIDGANDL_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000492204.1_1_10:103552448-103553834:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4781879686999	1	927.478188	926.470912	1.6997	0.0015764	0.18516	0.00017174	1.8848	0.0017481	927.4784719172427	24.14	0.12075	24.14	24.116	24.237	0	300	85	1.4411188	0.049871087	1.4411188	292.90836	0	10.136353						211	6	3	NaN	NaN	NaN	0.25548	1	6520	6520		21.771	3.8014	1	22696			14992	53	8700	8879	11852	11852					0.004734882808861585
LPIDGANDL	9	Unmodified	_LPIDGANDL_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000492204.1_1_10:103552448-103553834:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.4781879686999	1	927.478188	926.470912	0.99942	0.00092694	-1.0832	-0.0010046	-0.083777	-7.7702E-05	927.4781266618406	24.164	0.12062	24.151	24.103	24.224	-0.012749	297	73	1.4428991	0.042742133	1.4413797	293.2702	0	8.687347						189	6	3	NaN	NaN	NaN	0.0035249	1	6390	6390		106.42	39.27	1	20387			14993	53	8700	8879	11853	11853					0.004734882808861585
LPIDGANDLF	10	Unmodified	_LPIDGANDLF_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;ENST00000492204.1_1_10:103552448-103553834:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5466018848997	1	1074.5466	1073.53933	2.3344	0.0025084	-0.88283	-0.00094864	1.4516	0.0015598	1074.546639136122	30.125	0.38617	30.125	30.053	30.439	0	114	145	1.5511382	0.084959626	1.5511382	314.6367	0	17.233429						949	17	3	NaN	NaN	NaN	0.0025223	1	11712	11712		84.233	28.82	1	419500			14994	53	8701	8880	11854	11854					0.005497328607361851
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8240863336001	2	592.824086	1183.63362	1.2237	0.00072544	-3.6329	-0.0021537	-2.4092	-0.0014282	592.8226611002331	29.232	0.16892	29.232	29.112	29.28	0	1179	79	0.9112251	0.04774952	0.9112251	369.22995	0	19.348206						241	8	4	NaN	NaN	NaN	0.2154	1	15973	15973		28.896	2.7806	1	40484			14995	406	8702	8881	11855	11855					0.04914826892263591
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1184.6408962006	1	1184.6409	1183.63362	2.6486	0.0031376	-0.33898	-0.00040157	2.3096	0.002736	1184.6402057953085	29.256	0.16891	29.256	29.184	29.353	0	66	136	1.579413	0.07955265	1.579413	319.99356	0	16.117584						510	8	4	NaN	NaN	NaN	7.9405E-05	1	15976	15976		87.778	42.613	1	107170			14996	406	8702	8881	11856	11856					0.04914826892263591
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8240863336001	2	592.824086	1183.63362	0.81602	0.00048376	-1.3784	-0.00081718	-0.56243	-0.00033342	592.8232209035771	29.231	0.12068	29.224	29.175	29.296	-0.0077209	1179	100	0.9112251	0.06062156	0.90970564	369.22995	0	24.563995						304	6	4	NaN	NaN	NaN	0.059285	1	15363	15363		47.482	18.586	1	64983			14997	406	8702	8881	11857	11857					0.04914826892263591
LPIDVTEGEVI	11	Unmodified	_LPIDVTEGEVI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1184.6408962006	1	1184.6409	1183.63362	1.8499	0.0021915	-0.45235	-0.00053587	1.3976	0.0016556	1184.640054429371	29.256	0.16895	29.248	29.175	29.344	-0.0077229	63	130	1.5811787	0.076008916	1.5796592	320.3513	0	15.399628						494	8	4	NaN	NaN	NaN	0.00023361	1	15364	15364		80.901	39.944	1	97748			14998	406	8702	8881	11858	11858					0.04914826892263591
LPIDVTEIKII	11	Unmodified	_LPIDVTEIKII_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.38939645485	2	627.389396	1252.76424	0.97374	0.00061091	-9.3676	-0.0058772	-8.3939	-0.0052662	627.3841174911043	39.068	0.048088	39.068	39.02	39.068	0	1188	127	0.90571284	0.07727569	0.90571284	366.763	0	31.292358						275	3	4	NaN	NaN	NaN	0.7072	1	17856	17856		6.9844	1.0646	1	160530			14999	13828	8703	8882	11859	11859					0.147968426110765
LPIDVTEIKII	11	Unmodified						0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.389396	1252.76424	1.3291	0.00083385	-10.337	-0.0064854	-9.0081	-0.0056516	627.3841553528964	39.042	0.14465	39.047	38.999	39.143	0.0046806	1185	121	0.90755045	0.073587954	0.906031	367.50714		29.799011	-0.010733	-0.00068986	0.00015909	NaN	6.9844	273	7	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151970			15000	13828	8703	8882							0.147968426110765
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.30259282025	2	521.302593	1040.59063	2.2087	0.0011514	-1.5418	-0.00080376	0.66689	0.00034765	521.3020020630819	34.517	0.41013	34.517	34.445	34.855	0	1275	115	0.85233563	0.06999928	0.85233563	345.91428	0	28.408722						1022	18	5	NaN	NaN	NaN	0.014943	1	10250	10250		78.398	31.358	1	834040			15001	5966	8704	8883	11860	11860					0.0719610162545905
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5979091738998	1	1041.59791	1040.59063	2.2028	0.0022944	-0.19011	-0.00019802	2.0127	0.0020964	1041.598786342835	34.517	0.26538	34.517	34.469	34.734	0	153	253	1.5281296	0.14893234	1.5281296	310.0941	0	30.221924						1093	12	4	NaN	NaN	NaN	6.3027E-18	1	10251	10251		158.11	64.642	1	557080			15002	5966	8704	8883	11861	11861					0.0719610162545905
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.30259282025	2	521.302593	1040.59063	0.82803	0.00043166	-2.9738	-0.0015502	-2.1457	-0.0011186	521.3020733774182	35.263	0.31356	35.263	35.239	35.553	-4.5776E-05	1272	76	0.854179	0.046064615	0.8526596	346.66238	0	18.694977						276	14	2	NaN	NaN	NaN	0.24994	1	10035	10035		22.126	5.7097	1	26373			15003	5966	8704	8883	11862	11862					0.0719610162545905
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.30259282025	2	521.302593	1040.59063	1.9725	0.0010283	-0.86378	-0.00045029	1.1088	0.000578	521.30257092922	34.492	0.28938	34.491	34.443	34.732	-0.0006485	1269	112	0.8560222	0.06816828	0.85450274	347.41043	0	27.665588						996	13	5	NaN	NaN	NaN	0.014046	1	10037	10037		80.639	30.324	1	835860			15004	5966	8704	8883	11863	11863					0.0719610162545905
LPIFPDLQV	9	Unmodified	_LPIFPDLQV_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5979091738998	1	1041.59791	1040.59063	1.8053	0.0018804	-0.13154	-0.00013701	1.6738	0.0017434	1041.598048317838	34.492	0.31342	34.491	34.443	34.756	-0.0006485	153	187	1.5281296	0.10985613	1.5266101	310.0941	0	22.29245						694	14	2	NaN	NaN	NaN	0.00020136	1	10038	10038		116.74	50.255	1	507580			15005	5966	8704	8883	11864	11864					0.0719610162545905
LPIFPDLQV	9	Unmodified						0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.302593	1040.59063	0.7416	0.0003866	-1.6256	-0.00084745	-0.88404	-0.00046085	521.8014538614872	35.385	0.096481	35.385	35.385	35.482	0	1275	70	0.85233563	0.04237944	0.85233563	345.91428		17.199402	0.061044	0.00098313	-0.00016197	NaN	22.126	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6537.1			15006	5966	8704	8883							0.0719610162545905
LPIGASVSL	9	Unmodified	_LPIGASVSL_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.5138451935001	1	856.513845	855.506569	1.7314	0.001483	3.2499	0.0027836	4.9813	0.0042666	856.5165843186215	26.843	0.04829	26.843	26.819	26.867	0	420	46	1.3697531	0.026817799	1.3697531	278.74112	0	5.4573364						44	3	2	NaN	NaN	NaN	0.23112	1	5478	5478		23.334	2.779	1	3295.5			15007	3972	8705	8884	11865	11865					0.07303570528563341
LPIGASVSL	9	Unmodified	_LPIGASVSL_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000534966.1_1_12:121222241-121229350:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.5138451935001	1	856.513845	855.506569	1.6852	0.0014434	-0.96285	-0.0008247	0.72235	0.00061871	856.5127540493104	26.866	0.048273	26.856	26.808	26.856	-0.010645	417	34	1.3715409	0.019666314	1.3700215	279.10498	0	4.0020447						47	3	2	NaN	NaN	NaN	0.030391	1	5339	5339		58.599	18.445	1	3346.5			15008	3972	8705	8884	11866	11866					0.07303570528563341
LPIIDPIL	8	Unmodified	_LPIIDPIL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.5706317909002	1	893.570632	892.563355	1.2318	0.0011007	-0.37611	-0.00033608	0.85574	0.00076467	893.5703695783706	34.275	0.16867	34.274	34.225	34.394	-0.0012474	294	118	1.4446791	0.06947434	1.4431597	293.7953	0	14.128571						355	8	4	NaN	NaN	NaN	0.078841	1	5849	5849		69.745	10.299	1	72340			15009	701	8706	8885	11867	11867					0.1127761808509149
LPIIDVAPL	9	Unmodified	_LPIIDVAPL_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.5920955145001	1	950.592096	949.584819	1.2968	0.0012327	-0.93377	-0.00088764	0.36304	0.0003451	950.591257430044	33.189	0.048279	33.186	33.186	33.235	-0.0024796	258	49	1.4660252	0.028440237	1.4645058	297.86438	0	5.778473						74	3	2	NaN	NaN	NaN	0.03623	1	6956	6956		52.758	13.84	1	5153.7			15010	1696	8707	8886	11868	11868					0.10801003113806473
LPIKESEIIDF	11	Unmodified	_LPIKESEIIDF_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.36083598065	2	652.360836	1302.70712	0.67213	0.00043847	-5.745	-0.0037478	-5.0729	-0.0033093	652.3597705322094	27.156	0.19308	27.146	27.049	27.242	-0.010126	1122	82	0.9460945	0.049487233	0.9445751	382.95514	0	20.031158						378	9	5	NaN	NaN	NaN	0.64814	1	17995	17995		10.861	1.8994	1	49678			15011	3297	8708	8887	11869	11869					0.06787375334693024
LPILENDSI	9	Unmodified	_LPILENDSI_					0	0	0		nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD;ENST00000474543.5_1_20:57569146-57569728:+|nuORF	nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5513529117999	1	1013.55135	1012.54408	1.4657	0.0014855	-0.47111	-0.00047749	0.99456	0.001008	1013.5511542129167	27.59	0.096521	27.581	27.557	27.653	-0.009552	210	55	1.4944444	0.031947732	1.4929249	303.36844	0	6.485321						141	5	3	NaN	NaN	NaN	0.032689	1	8911	8911		55.592	21.153	1	12247			15012	1303	8709	8888	11870	11870					0.03830617003507086
LPILENDSI	9	Unmodified						0	0	0		nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD;ENST00000474543.5_1_20:57569146-57569728:+|nuORF	nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1013.55135	1012.54408	1.7837	0.0018078	-0.9016	-0.00091382	0.88206	0.00089402	1013.5506893424861	27.567	0.096539	27.567	27.543	27.639	0	213	52	1.4926696	0.030174494	1.4926696	303.00818		6.125366	-0.0068858	-0.00014634	-0.00012767	NaN	55.592	127	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12726			15013	1303	8709	8888							0.03830617003507086
LPILEPVL	8	Unmodified	_LPILEPVL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.5706317908999	1	893.570632	892.563355	1.4194	0.0012683	-0.25149	-0.00022473	1.1679	0.0010436	893.5696112566155	32.876	0.09655	32.876	32.828	32.925	0	264	130	1.4624695	0.076559305	1.4624695	297.41318	0	15.569397						386	5	3	NaN	NaN	NaN	0.044274	1	5965	5965		81.001	27.678	1	51793			15014	3658	8710	8889	11871	11871					0.11277618085068752
LPILEPVL	8	Unmodified	_LPILEPVL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.5706317908999	1	893.570632	892.563355	1.1156	0.00099685	-0.24191	-0.00021616	0.87367	0.00078069	893.5705585333837	32.851	0.096516	32.848	32.824	32.92	-0.0031052	261	139	1.4642475	0.08190501	1.462728	297.77475	0	16.656525						403	5	3	NaN	NaN	NaN	0.14214	1	5850	5850		55.947	8.626	1	53897			15015	3658	8710	8889	11872	11872					0.11277618085068752
LPILFIDQL	9	Unmodified	_LPILFIDQL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.6448593665	1	1071.64486	1070.63758	1.2187	0.001306	-0.24332	-0.00026075	0.97541	0.0010453	1071.6467407991677	37.29	0.096272	37.29	37.217	37.314	0	105	61	1.5564433	0.035362363	1.5564433	315.72366	0	7.173218						124	5	2	NaN	NaN	NaN	0.017076	1	11603	11603		75.698	13.722	1	13055			15016	568	8711	8890	11873	11873					0.10508961176606135
LPILFIDQL	9	Unmodified	_LPILFIDQL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.6448593665	1	1071.64486	1070.63758	0.93793	0.0010051	-3.341	-0.0035804	-2.4031	-0.0025752	1071.6443159364353	37.263	0.048153	37.265	37.241	37.289	0.0022469	108	82	1.5546752	0.047721505	1.5531558	315.365	0	9.680267						137	3	3	NaN	NaN	NaN	0.062072	1	11304	11304		41.785	12.186	1	11951			15017	568	8711	8890	11874	11874					0.10508961176606135
LPIMCLSNRE	10	Unmodified	_LPIMCLSNRE_					0	0	0			REV__ENST00000381341.6_1_2:15743997-15744603:+|nuORF	REV__ENST00000381341.6_1_2:15743997-15744603:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.2992012390501	2	588.299201	1174.58385	1.5002	0.00088256	-0.3331	-0.00019596	1.1671	0.0006866	588.2989593259418	20.501	0.21663	20.487	20.391	20.608	-0.014143	1173	148	0.91489893	0.090072334	0.9133795	370.7515	0	36.5007						704	10	4	NaN	NaN	NaN	0.12649	1	15074	15074		42.318	3.2785	1	240370	+		15018	11971	8712	8891	11875	11875					0.0035409741094554192
LPIPKKMK	8	Unmodified	_LPIPKKMK_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.6168704770001	1	954.61687	953.609594	1.3608	0.0012991	5.8438	0.0055785	7.2046	0.0068776	954.6233984892074	32.899	0.072376	32.897	32.873	32.945	-0.0024757	231	58	1.4820169	0.033756614	1.4804975	301.09534	0	6.858185						92	4	2	NaN	NaN	NaN	0.84651	1	7035	7035		1.6704	0.42852	1	8539.9			15019	5044	8713	8892	11876	11876					0.13093359715537645
LPIPKKMK	8	Unmodified						0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	954.61687	953.609594	1.0888	0.0010394	7.0545	0.0067343	8.1433	0.0077737	954.6233455905209	32.9	0.072437	32.9	32.876	32.949	0	240	52	1.4766881	0.030200124	1.4766881	300.0127		6.13562	0.0017744	0.00048214	-0.0019047	NaN	1.6704	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9532.9			15020	5044	8713	8892							0.13093359715537645
LPIPSEPLF	9	Unmodified	_LPIPSEPLF_					0	0	0		ENST00000416560.5_1_7:86974424-86974672:-|nuORF;ENST00000359941.9_1_7:86974424-86974694:-|nuORF	ENST00000416560.5_1_7:86974424-86974672:-|nuORF	ENST00000416560.5_1_7:86974424-86974672:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5713600724	1	1012.57136	1011.56408	1.5541	0.0015737	-2.5414	-0.0025733	-0.98727	-0.00099968	1012.5685490509167	32.152	0.096512	32.152	32.128	32.225	0	183	133	1.510409	0.07802844	1.510409	306.61322	0	15.839783						374	5	3	NaN	NaN	NaN	0.02781	1	9055	9055		61.977	17.674	1	48053			15021	6594	8714	8893	11877	11877					0.05876412734130554
LPIPSEPLF	9	Unmodified	_LPIPSEPLF_					0	0	0		ENST00000416560.5_1_7:86974424-86974672:-|nuORF;ENST00000359941.9_1_7:86974424-86974694:-|nuORF	ENST00000416560.5_1_7:86974424-86974672:-|nuORF	ENST00000416560.5_1_7:86974424-86974672:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5713600724	1	1012.57136	1011.56408	1.0844	0.001098	-1.135	-0.0011492	-0.050572	-5.1208E-05	1012.5696802437801	32.151	0.16893	32.148	32.027	32.196	-0.0037613	183	142	1.510409	0.08332646	1.5088896	306.61322	0	16.915283						389	8	3	NaN	NaN	NaN	0.10956	1	8884	8884		34.439	9.5377	1	43290			15022	6594	8714	8893	11878	11878					0.05876412734130554
LPISEDKVM	9	Unmodified	_LPISEDKVM_					0	0	0		ENST00000470306.5_1_1:156128527-156128722:+|nuORF;nc|ENSG00000196189|Q9H3S1-2|SEMA4A;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000470306.5_1_1:156128527-156128722:+|nuORF	ENST00000470306.5_1_1:156128527-156128722:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5441590439	1	1031.54416	1030.53688	0.84319	0.00086979	4.3288	0.0044654	5.172	0.0053352	1031.548448968544	32.393	0.14479	32.389	32.316	32.461	-0.0037613	150	91	1.5299006	0.05311656	1.5283811	310.49307	0	10.779999						229	7	2	NaN	NaN	NaN	0.16171	1	9603	9603		27.789	4.4544	1	26534			15023	5607	8715	8894	11879	11879					0.022835611314576454
LPISEFALL	9	Unmodified	_LPISEFALL_					0	0	0		EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENSG00000167880|ENST00000301607|EVPL	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5870101366	1	1002.58701	1001.57973	1.1042	0.001107	-0.64324	-0.0006449	0.46095	0.00046215	1002.5872151128509	35.023	0.1206	35.023	34.975	35.096	0	171	67	1.5174994	0.039001822	1.5174994	308.09387	0	7.9184265						188	6	3	NaN	NaN	NaN	0.056143	1	8668	8668		44.302	2.5178	1	25620			15024	4573	8716	8895	11880	11880					0.07900699251183596
LPISEFALL	9	Unmodified	_LPISEFALL_					0	0	0		EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENSG00000167880|ENST00000301607|EVPL	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5870101366	1	1002.58701	1001.57973	1.3159	0.0013193	0.25224	0.0002529	1.5681	0.0015722	1002.5868067134178	34.998	0.096542	34.998	34.974	35.07	-4.5776E-05	174	79	1.5157272	0.046083212	1.5142077	307.73404	0	9.35614						219	5	3	NaN	NaN	NaN	0.032764	1	8494	8494		55.494	16.035	1	25897			15025	4573	8716	8895	11881	11881					0.07900699251183596
LPISQESLL	9	Unmodified	_LPISQESLL_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5720883539001	1	999.572088	998.564812	1.6618	0.0016611	0.99096	0.00099053	2.6527	0.0026516	999.5730546138745	27.398	0.14484	27.398	27.35	27.495	0	216	67	1.4908947	0.03904736	1.4908947	302.70477	0	7.9279785						191	7	3	NaN	NaN	NaN	0.041983	1	8535	8535		50.315	2.8336	1	19380			15026	3646	8717	8896	11882	11882					0.06547207383187015
LPISQESLL	9	Unmodified	_LPISQESLL_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.5720883539001	1	999.572088	998.564812	1.3092	0.0013086	0.41687	0.00041669	1.726	0.0017253	999.5720604749802	27.422	0.12068	27.411	27.363	27.484	-0.010126	216	64	1.4908947	0.037270427	1.4893752	302.70477	0	7.56723						174	6	3	NaN	NaN	NaN	0.030545	1	8353	8353		58.398	23.101	1	17265			15027	3646	8717	8896	11883	11883					0.06547207383187015
LPISSKAN	8	Unmodified	_LPISSKAN_					0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	829.4777940382	1	829.477794	828.470518	1.0785	0.00089461	-3.105	-0.0025755	-2.0265	-0.0016809	829.474914929342	37.795	0.096191	37.795	37.747	37.843	0	480	43	1.3339561	0.025084615	1.3339561	271.59662	0	5.1073						88	5	2	NaN	NaN	NaN	0.84512	1	5122	5122		2.4615	0	1	6784.9			15028	7383	8718	8897	11884	11884					0.04942113351705757
LPISSKAN	8	Unmodified						0	0	0		ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	ENST00000518468.1_3_8:53599460-53658116:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	829.477794	828.470518	1.4327	0.0011884	-2.3848	-0.0019782	-0.95217	-0.0007898	829.4748720915455	37.792	0.096256	37.795	37.747	37.843	0.0028229	477	52	1.3357477	0.030458331	1.3342283	271.96143		6.2013855	0.00012171	0.00035999	0.00013611	NaN	2.4615	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7916.1			15029	7383	8718	8897							0.04942113351705757
LPIWEKANLTL	11	Unmodified	_LPIWEKANLTL_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3793630848	2	649.379363	1296.74417	1.6126	0.0010472	-2.4228	-0.0015733	-0.81027	-0.00052617	649.3772554970894	27.784	0.14477	27.784	27.76	27.905	0	1095	61	0.9625867	0.036643386	0.9625867	389.64954	0	14.833038						168	7	3	NaN	NaN	NaN	0.03394	1	18725	18725		54.277	22.602	1	19749			15030	3152	8719	8898	11885	11885					0.10767091671118578
LPIWEKANLTL	11	Unmodified	_LPIWEKANLTL_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3793630848	2	649.379363	1296.74417	0.99154	0.00064389	-1.6825	-0.0010926	-0.69098	-0.00044871	649.3781803663838	27.808	0.096592	27.798	27.774	27.87	-0.009552	1095	61	0.9625867	0.036643386	0.96106726	389.64954	0	14.833038						173	5	3	NaN	NaN	NaN	0.12028	1	17888	17888		37.743	18.406	1	21678			15031	3152	8719	8898	11886	11886					0.10767091671118578
LPIYSEEIVEM	11	Unmodified	_LPIYSEEIVEM_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.83105408595	2	661.831054	1321.64756	1.7965	0.001189	-2.7704	-0.0018335	-0.97389	-0.00064455	661.8282697355892	30.053	0.12072	30.053	30.004	30.125	0	1101	46	0.95892316	0.027475119	0.95892316	388.08945	0	11.119568						135	6	3	NaN	NaN	NaN	0.29515	1	19130	19130		25.801	7.5675	1	16216			15032	1231	8720	8899	11887	11887					-0.00040263670985041244
LPKDQDQRLPG	11	Unmodified	_LPKDQDQRLPG_					0	0	0		nc|ENSG00000152763|Q5VTH9-2|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4;ENSG00000152763|ENST00000371026|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.89820953569995	3	422.89821	1265.6728	1.6903	0.00071481	-2.1781	-0.00092112	-0.48785	-0.00020631	422.8979111482919	14.165	0.071838	14.154	14.13	14.201	-0.011219	1407	25	0.77102906	0.01481992	0.7695096	468.2793	0	9.000763						48	4	2	NaN	NaN	NaN	0.67772	1	17329	17329		4.2106	0	1	3525.1			15033	3786	8721	8900	11888	11888					0.05058971966468562
LPKDQDQRLPG	11	Unmodified						0	0	0		nc|ENSG00000152763|Q5VTH9-2|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4;ENSG00000152763|ENST00000371026|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	422.89821	1265.6728	1.7572	0.0007431	-1.2015	-0.00050812	0.55564	0.00023498	422.89740373162124	14.093	0.096084	14.093	14.069	14.165	0	1410	28	0.76917666	0.016673267	0.76917666	467.15424		10.126404	-0.030226	0.00031415	-0.00016647	NaN	4.2106	52	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4785.6			15034	3786	8721	8900							0.05058971966468562
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.32587095130003	2	487.325871	972.637189	2.1029	0.0010248	-1.8901	-0.00092111	0.21281	0.00010371	487.32512191878493	22.935	0.072298	22.935	22.911	22.983	0	1425	37	0.7599118	0.02224183	0.7599118	308.68588	0	9.034912						56	4	2	NaN	NaN	NaN	0.78967	1	7691	7691		10.605	3.0646	1	5713.5			15035	5727	8722	8901	11889	11889					0.14977586247414365
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.32587095130003	2	487.325871	972.637189	2.0762	0.0010118	-1.3753	-0.00067022	0.70093	0.00034158	487.32562456359017	23.103	0.096277	23.09	23.017	23.114	-0.013294	1425	34	0.7599118	0.020389438	0.75839233	308.68588	0	8.282471						73	5	2	NaN	NaN	NaN	0.5868	1	7540	7540		26.115	8.316	1	4407.3			15036	5727	8722	8901	11890	11890					0.14977586247414365
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1	nc|ENSG00000100284|O60784-4|TOM1	nc|ENSG00000100284|O60784-4|TOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.29001676125	2	497.290017	992.565481	1.8818	0.0009358	-0.5506	-0.00027381	1.3312	0.00066199	497.2890338342306	16.155	0.14388	16.142	16.094	16.238	-0.012993	1335	37	0.8154261	0.02216971	0.81390667	331.1438	0	9.003082						98	7	2	NaN	NaN	NaN	0.23499	1	8160	8160		23.086	0	1	7493.5			15037	1214	8723	8902	11891	11891					0.06890046822900331
LPKSPSRC	8	Unmodified	_LPKSPSRC_					0	0	0			REV__ENST00000488896.1_1_2:120689943-120692535:+|nuORF	REV__ENST00000488896.1_1_2:120689943-120692535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.24201232365	2	444.242012	886.469472	0.72752	0.0003232	-1.1533	-0.00051237	-0.42582	-0.00018917	444.24193185892807	43.513	0.21597	43.513	43.393	43.609	0	1410	46	0.76917666	0.027788818	0.76917666	312.87244	0	11.303436						187	10	3	NaN	NaN	NaN	0.84512	1	5894	5894		2.4615	1.0219	1	17877	+		15038	12446	8724	8903	11892	11892					0.021695757111501734
LPLAFEFDPEL	11	Unmodified	_LPLAFEFDPEL_					0	0	0		nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF	nc|ENSG00000100429|Q969S8-4|HDAC10	nc|ENSG00000100429|Q969S8-4|HDAC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8344540546501	2	645.834454	1289.65436	1.5414	0.00099549	-2.4787	-0.0016008	-0.93732	-0.00060535	646.3338268066074	35.988	0.12048	35.988	35.94	36.061	0	1128	70	0.9424274	0.04217851	0.9424274	381.5113	0	17.074615						147	6	2	NaN	NaN	NaN	0.37016	1	18590	18590		23.118	5.1479	1	13004			15039	1246	8725	8904	11893	11893					0.02111417271908067
LPLAFEFDPEL	11	Unmodified	_LPLAFEFDPEL_					0	0	0		nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF	nc|ENSG00000100429|Q969S8-4|HDAC10	nc|ENSG00000100429|Q969S8-4|HDAC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8344540546501	2	645.834454	1289.65436	1.5369	0.00099259	-3.7711	-0.0024355	-2.2342	-0.0014429	645.83301627343	35.987	0.096554	35.988	35.94	36.036	0.0011024	1125	79	0.9442611	0.047682643	0.94274163	382.2536	0	19.302795						159	5	3	NaN	NaN	NaN	0.37016	1	17762	17762		23.118	6.2593	1	13852			15040	1246	8725	8904	11894	11894					0.02111417271908067
LPLAFVATL	9	Unmodified	_LPLAFVATL_					0	0	0		nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;ENST00000534667.1_1_11:64880702-64881078:+|nuORF;ENST00000531029.5_1_11:64880120-64882285:+|nuORF;ENST00000527851.5_1_11:64880615-64881038:+|nuORF;ENST00000533766.5_1_11:64880615-64882334:+|nuORF	nc|ENSG00000149809|O76062-2|TM7SF2	nc|ENSG00000149809|O76062-2|TM7SF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5815308282	1	944.581531	943.574254	1.4918	0.0014092	1.232	0.0011637	2.7238	0.0025729	944.5830115269741	34.662	0.072418	34.662	34.638	34.71	0	267	73	1.4606913	0.042655945	1.4606913	296.80765	0	8.6675415						131	4	3	NaN	NaN	NaN	0.062836	1	6919	6919		41.46	4.8736	1	10170			15041	3697	8726	8905	11895	11895					0.10021020459362262
LPLAFVATL	9	Unmodified	_LPLAFVATL_					0	0	0		nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;ENST00000534667.1_1_11:64880702-64881078:+|nuORF;ENST00000531029.5_1_11:64880120-64882285:+|nuORF;ENST00000527851.5_1_11:64880615-64881038:+|nuORF;ENST00000533766.5_1_11:64880615-64882334:+|nuORF	nc|ENSG00000149809|O76062-2|TM7SF2	nc|ENSG00000149809|O76062-2|TM7SF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5815308282	1	944.581531	943.574254	1.6159	0.0015264	-0.18642	-0.00017609	1.4295	0.0013503	944.5811973356103	34.66	0.048229	34.66	34.636	34.684	-0.00064468	264	67	1.4624695	0.039105415	1.46095	297.16898	0	7.9460754						101	3	3	NaN	NaN	NaN	0.13477	1	6779	6779		30.791	8.6648	1	7244.8			15042	3697	8726	8905	11896	11896					0.10021020459362262
LPLAGEEEL	9	Unmodified	_LPLAGEEEL_					0	0	0		nc|ENSG00000172667|Q9HA38-2|ZMAT3;ENSG00000172667|ENST00000311417|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5091537461	1	970.509154	969.501877	1.6161	0.0015685	0.075333	7.3111E-05	1.6915	0.0016416	970.5089293225736	25.177	0.12066	25.165	25.117	25.238	-0.012011	288	100	1.4482387	0.05867362	1.4467193	294.1641	0	11.917725						209	6	3	NaN	NaN	NaN	0.043119	1	7447	7447		49.833	18.272	1	17945			15043	4846	8727	8906	11897	11897					0.015906415951349118
LPLAGEEEL	9	Unmodified						0	0	0		nc|ENSG00000172667|Q9HA38-2|ZMAT3;ENSG00000172667|ENST00000311417|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	970.509154	969.501877	1.9622	0.0019044	0.57766	0.00056062	2.5399	0.002465	970.5099180109229	25.178	0.12066	25.178	25.153	25.274	0	288	97	1.4482387	0.056898713	1.4482387	294.1641		11.55719	0.0061263	0.00031207	0.00075972	NaN	49.833	155	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15215			15044	4846	8727	8906							0.015906415951349118
LPLAIIISL	9	Unmodified	_LPLAIIISL_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.6441310850001	1	952.644131	951.636855	1.7366	0.0016543	0.09851	9.3845E-05	1.8351	0.0017482	952.6440830342716	38.802	0.12014	38.806	38.758	38.878	0.0040245	219	52	1.4891195	0.030174494	1.4876001	302.54727	0	6.130615						104	6	2	NaN	NaN	NaN	0.14945	1	6998	6998		28.667	4.8161	1	6213.7			15045	1426	8728	8907	11898	11898					0.1591016652756707
LPLALGPW	8	Unmodified	_LPLALGPW_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.76036386479996	2	433.760364	865.506175	1.4667	0.00063619	-10.771	-0.0046721	-9.3044	-0.0040359	433.75637087738363	36.18	0.1687	36.181	36.181	36.349	0.0011024	1404	28	0.77288127	0.016669631	0.7713618	314.49545	0	6.783081						83	8	2	NaN	NaN	NaN	0.84651	1	5470	5470		1.6704	0	1	5773.8	+		15046	10004	8729	8908	11899	11899					0.06804195599363538
LPLASDPLL	9	Unmodified	_LPLASDPLL_					0	0	0		ENSG00000112561|ENST00000373033|TFEB;nc|ENSG00000112561|P19484-2|TFEB	ENSG00000112561|ENST00000373033|TFEB	ENSG00000112561|ENST00000373033|TFEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.5557100082	1	938.55571	937.548434	1.5189	0.0014256	-5.613	-0.0052681	-4.0941	-0.0038425	938.550174654429	30.414	0.16893	30.407	30.359	30.528	-0.0064106	276	100	1.4553556	0.058692336	1.4538362	295.75082	0	11.927216						245	8	2	NaN	NaN	NaN	0.17818	1	6636	6636		26.732	0	1	51967			15047	1878	8730	8909	11900	11900					0.07716126217087549
LPLATQGLTV	10	Unmodified	_LPLATQGLTV_					0	0	0			REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF	REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.80549964995	2	506.8055	1011.59645	1.332	0.00067509	-3.2536	-0.0016489	-1.9215	-0.00097384	506.80394150362224	19.37	0.096117	19.356	19.308	19.404	-0.014141	1275	76	0.85233563	0.046109498	0.8508162	346.0437	0	18.720184						195	5	4	NaN	NaN	NaN	0.16973	1	8891	8891		38.131	0	1	40043	+		15048	12485	8731	8910	11901	11901					0.09111200137135711
LPLCFSYLAH	10	Unmodified	_LPLCFSYLAH_					0	0	0			REV__nc|ENSG00000115107|Q658P3-4|STEAP3	REV__nc|ENSG00000115107|Q658P3-4|STEAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.29952720255	2	582.299527	1162.5845	1.6363	0.00095284	-9.1016	-0.0052998	-7.4652	-0.004347	582.2941212116853	29.16	0.096539	29.16	29.136	29.232	0	1188	73	0.90571284	0.044124186	0.90571284	367.07297	0	17.882904						171	5	2	NaN	NaN	NaN	0.67523	1	15233	15233		9.746	0	1	20598	+		15049	9176	8732	8911	11902	11902					0.009712601222872763
LPLDDQVIL	9	Unmodified	_LPLDDQVIL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000481441.1_1_6:33163678-33163975:-|nuORF	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.5877384181	1	1025.58774	1024.58046	1.1682	0.0011981	-5.4063	-0.0055447	-4.2381	-0.0043466	1025.5820093643442	30.414	0.12066	30.407	30.359	30.48	-0.0064106	138	61	1.5369828	0.035411	1.5354633	311.9544	0	7.1872253						125	6	2	NaN	NaN	NaN	0.16939	1	9385	9385		27.296	8.1326	1	13911			15050	5463	8733	8912	11903	11903					0.0691549390023738
LPLDDQVIL	9	Unmodified						0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000481441.1_1_6:33163678-33163975:-|nuORF	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1025.58774	1024.58046	1.988	0.0020388	-2.2105	-0.0022671	-0.22256	-0.00022826	1026.5890720014024	30.391	0.09655	30.391	30.366	30.463	0	138	46	1.5369828	0.026554108	1.5369828	311.95438		5.389557	-0.0083549	0.0013703	0.00075972	NaN	27.296	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7483.1			15051	5463	8733	8912							0.0691549390023738
LPLDDQVILL	10	Unmodified	_LPLDDQVILL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000481441.1_1_6:33163678-33163975:-|nuORF	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.83953943255	2	569.839539	1137.66453	0.89847	0.00051198	-0.91181	-0.00051959	-0.013345	-7.6046E-06	569.8394424053512	34.202	0.1207	34.201	34.153	34.274	-0.0012474	1188	43	0.90571284	0.02573073	0.9041934	367.16718	0	10.431						163	6	3	NaN	NaN	NaN	0.44412	1	13910	13910		21.771	2.6075	1	15199			15052	5463	8734	8913	11904	11904					0.10120024997127075
LPLDIAIV	8	Unmodified	_LPLDIAIV_					0	0	0		tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	853.5393316625	1	853.539332	852.532055	1.2312	0.0010509	-2.7469	-0.0023446	-1.5156	-0.0012936	853.5377676642202	32.634	0.04829	32.631	32.607	32.655	-0.0031052	378	64	1.3947657	0.03748095	1.3932463	283.8468	0	7.6276855						66	3	2	NaN	NaN	NaN	0.50567	1	5288	5288		30.791	0	1	4567.4			15053	13820	8735	8914	11905	11905					0.09989045050986078
LPLDIAIV	8	Unmodified						0	0	0		tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	853.539332	852.532055	1.5712	0.0013411	0.31692	0.0002705	1.8881	0.0016116	853.5400381978606	32.635	0.048302	32.635	32.611	32.659	0	384	55	1.3911947	0.03213501	1.3911947	283.1201		6.5397644	0.0020926	0.0011012	-0.0010258	NaN	30.791	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4498.3			15054	13820	8735	8914							0.09989045050986078
LPLDLEDIF	9	Unmodified	_LPLDLEDIF_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5717540028998	1	1074.57175	1073.56448	1.1885	0.0012771	-0.63514	-0.0006825	0.55331	0.00059457	1074.5704085238576	37.29	0.24055	37.29	37.217	37.458	0	105	94	1.5564433	0.05479133	1.5564433	315.7127	0	11.114014						392	11	2	NaN	NaN	NaN	0.025843	1	11719	11719		64.55	3.2787	1	58935			15055	3682	8736	8915	11906	11906					0.03063787663313633
LPLDLREL	8	Unmodified	_LPLDLREL_					0	0	0		ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	ENSG00000128274|ENST00000642412|A4GALT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.79239227470003	2	484.792392	967.570232	1.657	0.00080328	-0.61037	-0.0002959	1.0466	0.00050738	484.791770129288	28.894	0.096533	28.894	28.87	28.967	0	1293	40	0.84127116	0.023982108	0.84127116	341.76007	0	9.742554						79	5	2	NaN	NaN	NaN	0.83913	1	7548	7548		3.9685	0	1	6296.2			15056	2563	8737	8916	11907	11907					0.08514930965668555
LPLDTAETL	9	Unmodified	_LPLDTAETL_					0	0	0		ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5248038102999	1	972.524804	971.517527	2.2649	0.0022026	-1.9357	-0.0018825	0.32917	0.00032013	972.5230590137543	25.829	0.072399	25.829	25.805	25.877	0	258	55	1.4660252	0.03200209	1.4660252	297.76822	0	6.5000305						91	4	2	NaN	NaN	NaN	0.074859	1	7655	7655		39.459	14.498	1	8796.2			15057	5443	8738	8917	11908	11908					0.030629281121719032
LPLEEETL	8	Unmodified	_LPLEEETL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4982547088001	1	943.498255	942.490978	1.9429	0.0018332	-1.716	-0.001619	0.22699	0.00021417	943.4963545837571	25.057	0.096508	25.057	25.009	25.105	0	297	139	1.4428991	0.08194864	1.4428991	293.1972	0	16.651947						473	5	5	NaN	NaN	NaN	0.063835	1	6875	6875		74.332	2.3391	1	197620			15058	5661	8739	8918	11909	11909					0.01743239220866144
LPLEEETL	8	Unmodified	_LPLEEETL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4982547088001	1	943.498255	942.490978	2.2811	0.0021522	-7.1795	-0.0067738	-4.8984	-0.0046217	943.4914647472334	25.057	0.38596	25.045	24.996	25.382	-0.012011	297	124	1.4428991	0.07302177	1.4413797	293.19724	0	14.838013						854	17	2	NaN	NaN	NaN	0.12876	1	6739	6739		58.599	14.297	1	320700			15059	5661	8739	8918	11910	11910					0.01743239220866144
LPLEEGQAVL	10	Unmodified	_LPLEEGQAVL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5935520775	1	1068.59355	1067.58628	1.9037	0.0020343	0.6173	0.00065964	2.521	0.002694	1068.594150997038	26.625	0.24184	26.625	26.577	26.819	0	129	82	1.5422925	0.047797322	1.5422925	312.86453	0	9.696014						302	11	4	NaN	NaN	NaN	0.00037805	1	11458	11458		92.758	47.593	1	42703			15060	2278;6807	8740	8919	11911	11911					0.05518592411908685
LPLEEGQAVL	10	Unmodified	_LPLEEGQAVL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5935520775	1	1068.59355	1067.58628	0.95121	0.0010165	0.27199	0.00029064	1.2232	0.0013071	1068.5931388366794	26.625	0.19304	26.614	26.566	26.759	-0.010643	126	67	1.544062	0.03893149	1.5425426	313.22348	0	7.897522						284	9	3	NaN	NaN	NaN	0.20007	1	11189	11189		35.523	11.123	1	42366			15061	2278;6807	8740	8919	11912	11912					0.05518592411908685
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENSG00000013016|ENST00000322054|EHD3	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.87674581209995	3	401.876746	1202.60841	1.2958	0.00052077	-1.6975	-0.00068219	-0.40166	-0.00016142	401.8762080681673	20.213	0.14424	20.213	20.189	20.333	0	1458	55	0.7395112	0.033406258	0.7395112	449.3908	0	20.300537						271	7	4	NaN	NaN	NaN	0.048656	1	16552	16552		35.523	19.297	1	71109			15062	472	8741	8920	11913	11913					0.015208168803155786
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENSG00000013016|ENST00000322054|EHD3	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.31148048485	2	602.31148	1202.60841	1.3758	0.00082867	-0.81088	-0.0004884	0.56494	0.00034027	602.3109052456043	20.213	0.12016	20.213	20.189	20.309	0	1179	94	0.9112251	0.056904554	0.9112251	369.1628	0	23.05362						273	6	3	NaN	NaN	NaN	0.084037	1	16553	16553		38.131	15.013	1	45150			15063	472	8741	8920	11914	11914					0.015208168803155786
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENSG00000013016|ENST00000322054|EHD3	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31148048485	2	602.31148	1202.60841	1.0914	0.00065736	-1.2031	-0.00072462	-0.11167	-6.7261E-05	602.310759368222	20.285	0.1926	20.271	20.222	20.415	-0.014141	1182	94	0.9093879	0.056904554	0.90786844	368.41852	0	23.05362						280	9	2	NaN	NaN	NaN	0.026469	1	15900	15900		63.731	24.272	1	46593			15064	472	8741	8920	11915	11915					0.015208168803155786
LPLEEHYRF	9	Unmodified	_LPLEEHYRF_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1;ENSG00000013016|ENST00000322054|EHD3	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.87674581209995	3	401.876746	1202.60841	1.4043	0.00056436	-1.2328	-0.00049545	0.17147	6.8908E-05	401.876265281552	20.285	0.21668	20.271	20.222	20.439	-0.014141	1458	52	0.7395112	0.03154862	0.73799175	449.3908	0	19.171692						288	10	4	NaN	NaN	NaN	0.019103	1	15901	15901		63.765	33.729	1	66910			15065	472	8741	8920	11916	11916					0.015208168803155786
LPLELTVEL	9	Unmodified	_LPLELTVEL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.6081395091999	1	1026.60814	1025.60086	1.2529	0.0012862	-0.80587	-0.00082731	0.44704	0.00045893	1026.6068600599065	33.552	0.072266	33.552	33.528	33.6	0	153	124	1.5281296	0.07253504	1.5281296	310.15338	0	14.721924						191	4	3	NaN	NaN	NaN	0.14301	1	9610	9610		29.598	6.2639	1	18329			15066	1007	8742	8921	11917	11917					0.08908664560044599
LPLELTVEL	9	Unmodified						0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1026.60814	1025.60086	0.73486	0.00075442	-0.38207	-0.00039224	0.35279	0.00036218	1026.6076318808769	33.551	0.096565	33.549	33.525	33.621	-0.0018463	153	49	1.5281296	0.028334856	1.5266101	310.15338		5.750946	-0.0015914	0.00027583	-0.00075972	NaN	29.598	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11983			15067	1007	8742	8921							0.08908664560044599
LPLELYEMW	9	Unmodified	_LPLELYEMW_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.53522072323324	3	398.535221	1192.58383	1.6416	0.00065424	5.7109	0.002276	7.3525	0.0029302	398.5378471489305	17.765	0.16783	17.765	17.693	17.861	0	1446	52	0.7469324	0.03153491	0.7469324	453.94376	0	19.165192						106	8	2	NaN	NaN	NaN	0.61413	1	16222	16222		2.5994	0.9189	1	6492.7			15068	4796	8743	8922	11918	11918					-0.004755793174354039
LPLEPRYR	8	Unmodified	_LPLEPRYR_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5996405084	1	1043.59964	1042.59236	1.2486	0.001303	-9.712	-0.010135	-8.4635	-0.0088325	1043.5920151779007	34.564	0.12057	34.563	34.563	34.684	-0.00064468	153	94	1.5281296	0.054895997	1.5266101	310.08633	0	11.139404						213	6	2	NaN	NaN	NaN	0.74229	1	10129	10129		16.417	3.8288	1	22980	+		15069	8735	8744	8923	11919	11919					0.07277155434076121
LPLERQRT	8	Unmodified	_LPLERQRT_					0	0	0			REV__ENST00000588526.5_1_19:13876871-13879305:+|nuORF	REV__ENST00000588526.5_1_19:13876871-13879305:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.79854028510005	2	506.79854	1011.58253	1.8206	0.00092269	-11.03	-0.0055897	-9.2089	-0.0046671	506.7933515052108	19.372	0.11997	19.372	19.372	19.492	0	1308	73	0.83204526	0.044272304	0.83204526	337.80603	0	17.974304						190	6	3	NaN	NaN	NaN	0.63138	1	9061	9061		23.334	1.2081	1	34368	+		15070	12902	8745	8924	11920	11920					0.0771996742871579
LPLFREVDM	9	Unmodified	_LPLFREVDM_					0	0	0		nc|ENSG00000148335|Q9BV86-2|NTMT1;ENSG00000148335|ENST00000372483|NTMT1	nc|ENSG00000148335|Q9BV86-2|NTMT1	nc|ENSG00000148335|Q9BV86-2|NTMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2969845136	2	560.296985	1118.57942	1.7611	0.00098675	-2.7791	-0.0015571	-1.018	-0.00057038	560.2964929120208	26.239	0.072382	26.228	26.18	26.252	-0.011137	1203	61	0.8965218	0.036778092	0.89500237	363.51547	0	14.912506						139	4	4	NaN	NaN	NaN	0.12866	1	13219	13219		31.675	7.825	1	22886			15071	3627	8746	8925	11921	11921					0.024869562596677497
LPLFREVDM	9	Unmodified						0	0	0		nc|ENSG00000148335|Q9BV86-2|NTMT1;ENSG00000148335|ENST00000372483|NTMT1	nc|ENSG00000148335|Q9BV86-2|NTMT1	nc|ENSG00000148335|Q9BV86-2|NTMT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.296985	1118.57942	2.0452	0.0011459	-2.3595	-0.001322	-0.31427	-0.00017608	560.295601465229	26.191	0.072386	26.191	26.167	26.239	0	1206	49	0.894683	0.029422462	0.894683	362.7699		11.929993	-0.018463	0.00024398	-0.00015968	NaN	31.675	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19647			15072	3627	8746	8925							0.024869562596677497
LPLGEYAV	8	Unmodified	_LPLGEYAV_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	861.4716460278	1	861.471646	860.46437	1.922	0.0016557	-0.57773	-0.0004977	1.3442	0.001158	861.4720886873187	27.833	0.19303	27.833	27.808	28.001	0	360	85	1.405474	0.049987912	1.405474	285.9842	0	10.171478						198	9	3	NaN	NaN	NaN	0.10499	1	5539	5539		63.31	3.8651	1	18924	+		15073	9194	8747	8926	11922	11922					0.02855595120183807
LPLGEYAV	8	Unmodified	_LPLGEYAV_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.4716460278	1	861.471646	860.46437	0.99809	0.00085983	0.59681	0.00051414	1.5949	0.001374	861.4724432370232	27.88	0.14484	27.87	27.798	27.943	-0.009552	360	64	1.405474	0.03746903	1.4039545	285.9842	0	7.6241455						167	7	2	NaN	NaN	NaN	0.12449	1	5403	5403		59.445	3.4978	1	17537	+		15074	9194	8747	8926	11923	11923					0.02855595120183807
LPLGEYAV	8	Unmodified						0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	861.471646	860.46437	1.922	0.0016557	-0.57773	-0.0004977	1.3442	0.001158	861.4720886873187	27.833	0.19303	27.833	27.808	28.001	0	360	85	1.405474	0.049987912	1.405474	285.9842		10.171478	-0.018984	-0.00048937	0.00075972	NaN	63.31	198	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18924	+		15075	9194	8747	8926							0.02855595120183807
LPLGEYAV	8	Unmodified						0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	861.471646	860.46437	0.99809	0.00085983	0.59681	0.00051414	1.5949	0.001374	861.4724432370232	27.88	0.14484	27.87	27.798	27.943	-0.009552	360	64	1.405474	0.03746903	1.4039545	285.9842		7.6241455	0.018984	0.00052246	-0.00075972	NaN	63.31	167	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17537	+		15076	9194	8747	8926							0.02855595120183807
LPLGSEPAL	9	Unmodified	_LPLGSEPAL_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5087598156	1	896.50876	895.501483	2.0913	0.0018749	-1.6637	-0.0014915	0.42768	0.00038342	896.5069745237375	25.588	0.12058	25.588	25.515	25.636	0	387	43	1.389409	0.025001884	1.389409	282.54126	0	5.0842285						113	6	2	NaN	NaN	NaN	0.043119	1	5996	5996		49.833	13.246	1	8476.5			15077	5013	8748	8927	11924	11924					0.04955266665945146
LPLGSEPAL	9	Unmodified						0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	896.50876	895.501483	2.4139	0.0021641	0.66608	0.00059715	3.0799	0.0027612	896.510300526844	25.588	0.072378	25.576	25.552	25.624	-0.0116	387	40	1.389409	0.023212433	1.3878895	282.54126		4.7203064	-0.0058899	0.0010389	-0.00075972	NaN	49.833	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4317.2			15078	5013	8748	8927							0.04955266665945146
LPLGVLLVL	9	Unmodified	_LPLGVLLVL_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.6492164629	1	936.649216	935.64194	0.78398	0.00073431	-5.8072	-0.0054393	-5.0232	-0.004705	936.6437726899115	39.43	0.28836	39.43	39.334	39.622	0	249	73	1.4713576	0.042646766	1.4713576	299.01147	0	8.666779						241	13	2	NaN	NaN	NaN	0.033463	1	6746	6746		54.579	0	1	37219	+		15079	10627	8749	8928	11925	11925					0.17154470390164533
LPLGVLLVL	9	Unmodified	_LPLGVLLVL_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.6492164629	1	936.649216	935.64194	1.6657	0.0015601	-6.0387	-0.0056562	-4.373	-0.004096	936.6436444113727	39.38	0.28837	39.385	39.313	39.601	0.0053368	246	61	1.4731345	0.03553903	1.4716152	299.37262	0	7.22229						388	13	3	NaN	NaN	NaN	0.16059	1	6607	6607		27.861	0	1	50440	+		15080	10627	8749	8928	11926	11926					0.17154470390164533
LPLGVLLVL	9	Unmodified						0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.649216	935.64194	0.78398	0.00073431	-5.8072	-0.0054393	-5.0232	-0.004705	936.6437726899115	39.43	0.28836	39.43	39.334	39.622	0	249	73	1.4713576	0.042646766	1.4713576	299.01147		8.666779	0.02245	0.00013199	-0.0001288	NaN	54.579	241	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37219	+		15081	10627	8749	8928							0.17154470390164533
LPLGVLLVL	9	Unmodified						0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.649216	935.64194	1.6657	0.0015601	-6.0387	-0.0056562	-4.373	-0.004096	936.6436444113727	39.38	0.28837	39.385	39.313	39.601	0.0053368	246	61	1.4731345	0.03553903	1.4716152	299.37262		7.22229	-0.02245	-8.4874E-05	0.0001288	NaN	54.579	388	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50440	+		15082	10627	8749	8928							0.17154470390164533
LPLHAIIVK	9	Unmodified	_LPLHAIIVK_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.3367699886	2	502.33677	1002.65899	1.2792	0.00064259	4.6537	0.0023377	5.933	0.0029803	502.3394875078039	34.685	0.19281	34.684	34.587	34.78	-0.0006485	1263	34	0.85970795	0.02026838	0.8581885	349.07855	0	8.229858						93	9	2	NaN	NaN	NaN	0.48931	1	8535	8535		10.052	3.9612	1	7544.8	+		15083	11345	8750	8929	11927	11927					0.15776390995984002
LPLHLNHLL	9	Unmodified	_LPLHLNHLL_					0	0	0		ENST00000460323.1_1_1:151275853-151278830:-|nuORF	ENST00000460323.1_1_1:151275853-151278830:-|nuORF	ENST00000460323.1_1_1:151275853-151278830:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.6516760789	1	1069.65168	1068.6444	1.3668	0.001462	-4.8369	-0.0051738	-3.47	-0.0037117	1069.6463049981699	34.879	0.072327	34.879	34.831	34.903	0	84	73	1.5688156	0.04242587	1.5688156	318.24094	0	8.606262						100	4	2	NaN	NaN	NaN	0.29681	1	11512	11512		19.118	3.9429	1	9162.5			15084	7072	8751	8930	11928	11928					0.11282318847838724
LPLIEIII	8	Unmodified	_LPLIEIII_					0	0	0		tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.6175819835001	1	923.617582	922.610306	1.1313	0.0010448	-1.184	-0.0010936	-0.052743	-4.8715E-05	923.6159361465861	41.329	0.19262	41.329	41.281	41.474	0	258	67	1.4660252	0.039121985	1.4660252	297.98886	0	7.952057						217	9	2	NaN	NaN	NaN	0.19946	1	6462	6462		50.033	0	1	16377			15085	13831	8752	8931	11929	11929					0.14590477636238575
LPLIEIII	8	Unmodified	_LPLIEIII_					0	0	0		tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.6175819835001	1	923.617582	922.610306	0.62898	0.00058094	1.6993	0.0015695	2.3283	0.0021505	923.6188669106854	41.328	0.12046	41.336	41.336	41.457	0.0082626	258	70	1.4660252	0.040893793	1.4645058	297.98886	0	8.312195						143	6	2	NaN	NaN	NaN	0.27293	1	6338	6338		44.247	0	1	13538			15086	13831	8752	8931	11930	11930					0.14590477636238575
LPLIEIII	8	Unmodified						0	0	0		tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	923.617582	922.610306	0.85039	0.00078544	0.85015	0.00078522	1.7005	0.0015707	923.6185976288934	41.28	0.072258	41.288	41.216	41.288	0.0082588	264	73	1.4624695	0.042674065	1.46095	297.26608		8.674042	-0.020705	0.0011913	-0.0025376	NaN	50.033	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6852.9			15087	13831	8752	8931							0.14590477636238575
LPLLEKWLP	9	Unmodified	_LPLLEKWLP_					0	0	0		ENST00000483224.5_1_3:66293716-66312487:+|nuORF	ENST00000483224.5_1_3:66293716-66312487:+|nuORF	ENST00000483224.5_1_3:66293716-66312487:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.84188515625	2	554.841885	1107.66922	1.2504	0.00069375	-5.6482	-0.0031338	-4.3978	-0.0024401	554.838698138247	24.526	0.072372	24.514	24.465	24.538	-0.012392	1257	49	0.86339295	0.029470205	0.8618735	350.12457	0	11.950775						116	4	3	NaN	NaN	NaN	0.14787	1	12823	12823		28.896	2.164	1	16334			15088	7218	8753	8932	11931	11931					0.11968953930545467
LPLLSGLL	8	Unmodified	_LPLLSGLL_					0	0	0		nc|ENSG00000198870|Q8NE28-3|STKLD1	REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	825.5444170404002	1	825.544417	824.537141	1.4577	0.0012034	-0.015077	-1.2447E-05	1.4426	0.0011909	825.5443431611793	33.287	0.19308	33.287	33.238	33.431	0	408	151	1.3769034	0.089473605	1.3769034	280.3626	0	18.218475						470	9	4	NaN	NaN	NaN	0.028839	1	5089	5089		87.795	0	1	159270			15089	8013	8754	8933	11932	11932					0.11785348913622329
LPLLSGLL	8	Unmodified	_LPLLSGLL_					0	0	0		nc|ENSG00000198870|Q8NE28-3|STKLD1	REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	825.5444170404002	1	825.544417	824.537141	1.0884	0.00089853	-0.36639	-0.00030247	0.72202	0.00059606	825.5439137445329	33.261	0.14477	33.259	33.235	33.379	-0.0024757	408	142	1.3769034	0.08408284	1.375384	280.3626	0	17.120789						453	7	4	NaN	NaN	NaN	0.057516	1	4967	4967		76.264	0	1	157360			15090	8013	8754	8933	11933	11933					0.11785348913622329
LPLLTEEH	8	Unmodified	_LPLLTEEH_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11;ENSG00000187033|ENST00000335556|SAMD7;nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.2609249708	2	476.260925	950.507297	1.1871	0.00056536	-0.75328	-0.00035876	0.43381	0.0002066	476.2608430277582	20.164	0.12037	20.15	20.126	20.246	-0.014143	1302	79	0.8357362	0.048003137	0.8342168	339.59692	0	19.505829						287	6	4	NaN	NaN	NaN	0.12449	1	6969	6969		59.445	6.6869	1	61544			15091	5514	8755	8934	11934	11934					0.030063651776117695
LPLMVEAIL	9	Unmodified	_LPLMVEAIL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5954663329002	1	998.595466	997.58819	1.6858	0.0016835	-0.56607	-0.00056528	1.1198	0.0011182	998.5952663900672	36.085	0.04826	36.085	36.085	36.133	0	207	43	1.496219	0.024842978	1.496219	303.78986	0	5.0440674						65	3	2	NaN	NaN	NaN	0.17818	1	8499	8499		26.732	6.1761	1	4741.7			15092	3072	8756	8935	11935	11935					0.08929929896169142
LPLNLEVVV	9	Unmodified	_LPLNLEVVV_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.6135592381	1	995.613559	994.606283	1.5212	0.0015145	-0.26291	-0.00026175	1.2583	0.0012527	995.6124615978142	32.876	0.072422	32.876	32.852	32.925	0	204	49	1.4979934	0.028385997	1.4979934	304.16254	0	5.763672						79	4	2	NaN	NaN	NaN	0.44082	1	8381	8381		12.049	2.3027	1	6334.8			15093	5745	8757	8936	11936	11936					0.1087638814251477
LPLNQWVF	8	Unmodified	_LPLNQWVF_					0	0	0		ENST00000458591.6_2_14:31171532-31177212:+|nuORF	ENST00000458591.6_2_14:31171532-31177212:+|nuORF	ENST00000458591.6_2_14:31171532-31177212:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5563787102001	1	1016.55638	1015.5491	2.0079	0.0020411	6.68	0.0067906	8.6879	0.0088317	1016.5652969675764	32.563	0.024128	32.563	32.563	32.587	0	195	37	1.5033154	0.021293998	1.5033154	305.1571	0	4.3224487						40	2	2	NaN	NaN	NaN	0.62311	1	9211	9211		23.85	13.799	1	4760.1			15094	7067	8758	8937	11937	11937					0.041949656568021965
LPLPAERVTL	10	Unmodified	_LPLPAERVTL_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000462665.5_1_3:183873423-183882592:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.83987378355	2	554.839874	1107.66519	0.94644	0.00052513	-0.44363	-0.00024615	0.50281	0.00027898	554.8400057183156	24.502	0.072367	24.502	24.454	24.526	0	1257	43	0.86339295	0.025789201	0.86339295	350.12457	0	10.458099						120	4	4	NaN	NaN	NaN	0.28195	1	13195	13195		28.495	7.9398	1	17831			15095	4094	8759	8938	11938	11938					0.11566864436849755
LPLPSDTVL	9	Unmodified	_LPLPSDTVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.5506246302999	1	954.550625	953.543348	2.0564	0.0019629	-0.35182	-0.00033583	1.7046	0.0016271	954.550459719143	28.701	0.36199	28.701	28.605	28.967	0	273	187	1.4571344	0.11039376	1.4571344	296.04037	0	22.428314						1372	16	5	NaN	NaN	NaN	0.0047854	1	7176	7176		103.03	47.532	1	579050			15096	6143	8760	8939	11939	11939					0.0647182235445598
LPLPSDTVL	9	Unmodified	_LPLPSDTVL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.5506246302999	1	954.550625	953.543348	1.9316	0.0018439	-0.41199	-0.00039327	1.5197	0.0014506	954.5503735477811	28.701	0.33785	28.692	28.596	28.933	-0.0083504	270	196	1.458913	0.11574173	1.4573935	296.4017	0	23.514801						1387	15	5	NaN	NaN	NaN	0.01047	1	7032	7032		91.429	32.829	1	567300			15097	6143	8760	8939	11940	11940					0.0647182235445598
LPLQLAITL	9	Unmodified	_LPLQLAITL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.6342946802	1	981.634295	980.627018	1.8333	0.0017996	0.45904	0.00045061	2.2923	0.0022502	981.6351231552122	34.71	0.24123	34.71	34.614	34.855	0	183	106	1.510409	0.062045097	1.510409	306.74326	0	12.600494						353	11	3	NaN	NaN	NaN	0.060816	1	7913	7913		42.318	2.1638	1	61522			15098	2425	8761	8940	11941	11941					0.1359297852217196
LPLSIAPL	8	Unmodified	_LPLSIAPL_					0	0	0			REV__ENST00000275767.3_1_7:134832846-134832921:+|nuORF	REV__ENST00000275767.3_1_7:134832846-134832921:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.5287669762	1	823.528767	822.521491	1.7427	0.0014352	1.1901	0.00098009	2.9328	0.0024153	823.5305066228182	29.16	0.072411	29.16	29.136	29.208	0	408	61	1.3769034	0.035751224	1.3769034	280.37387	0	7.279907						85	4	2	NaN	NaN	NaN	0.40747	1	5057	5057		36.036	2.8993	1	6239.4	+		15099	11597	8762	8941	11942	11942					0.103130623965626
LPLSIAPL	8	Unmodified						0	0	0			REV__ENST00000275767.3_1_7:134832846-134832921:+|nuORF	REV__ENST00000275767.3_1_7:134832846-134832921:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	823.528767	822.521491	1.7427	0.0014352	1.1901	0.00098009	2.9328	0.0024153	823.5305066228182	29.16	0.072411	29.16	29.136	29.208	0	408	61	1.3769034	0.035751224	1.3769034	280.37387		7.279907	-0.0078152	0.00067269	0.00075972	NaN	36.036	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6239.4	+		15100	11597	8762	8941							0.103130623965626
LPLSPGPG	8	Unmodified	_LPLSPGPG_					0	0	0		ENST00000393721.5_2_X:153172840-153173077:-|nuORF	ENST00000393721.5_2_X:153172840-153173077:-|nuORF	ENST00000393721.5_2_X:153172840-153173077:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4192165268001	1	737.419217	736.41194	0.91565	0.00067522	6.5228	0.00481	7.4384	0.0054852	737.4242160739386	35.384	0.096313	35.385	35.336	35.433	0.00053024	564	79	1.2837118	0.046710253	1.2821923	261.89917	0	9.529694						176	5	2	NaN	NaN	NaN	0.84651	1	3790	3790		1.6704	0	1	19735			15101	6769	8763	8942	11943	11943					0.03319056777240803
LPLSQTQLL	9	Unmodified	_LPLSQTQLL_					0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.80549964995004	2	506.8055	1011.59645	1.7985	0.00091148	-2.7411	-0.0013892	-0.94263	-0.00047773	506.80466011092597	19.324	0.095959	19.324	19.3	19.396	0	1272	73	0.854179	0.044262707	0.854179	346.7921	0	17.970398						164	5	3	NaN	NaN	NaN	0.10363	1	9064	9064		35.296	0.85769	1	36218	+		15102	11950	8764	8943	11944	11944					0.0911120013714708
LPLSQTQLL	9	Unmodified						0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.8055	1011.59645	1.7985	0.00091148	-2.7411	-0.0013892	-0.94263	-0.00047773	506.80466011092597	19.324	0.095959	19.324	19.3	19.396	0	1272	73	0.854179	0.044262707	0.854179	346.7921		17.970398	-0.015979	0.00022233	0.0016814	NaN	35.296	164	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36218	+		15103	11950	8764	8943							0.0911120013714708
LPLSQTQLL	9	Unmodified						0	0	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.8055	1011.59645	1.332	0.00067509	-3.2536	-0.0016489	-1.9215	-0.00097384	506.80394150362224	19.37	0.096117	19.356	19.308	19.404	-0.014141	1275	76	0.85233563	0.046109498	0.8508162	346.0437		18.720184	0.015979	-0.0002971	-0.0016814	NaN	35.296	195	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40043	+		15104	11950	8764	8943							0.0911120013714708
LPLTDSKNN	9	Unmodified	_LPLTDSKNN_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2667386302	2	501.266739	1000.51892	1.3182	0.00066078	-2.1023	-0.0010538	-0.78412	-0.00039305	501.2656100691462	32.201	0.048256	32.201	32.177	32.225	0	1290	52	0.84311575	0.03136462	0.84311575	342.35132	0	12.735748						53	3	2	NaN	NaN	NaN	0.66822	1	8614	8614		1.9246	0.48507	1	4223.6	+		15105	11344	8765	8944	11945	11945					0.01868562200957058
LPLTEHEL	8	Unmodified	_LPLTEHEL_					0	0	0		ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	ENSG00000172578|ENST00000341319|KLHL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.2609249708	2	476.260925	950.507297	1.5869	0.00075578	-1.1305	-0.00053842	0.45639	0.00021736	476.2605156731275	20.165	0.12014	20.165	20.117	20.237	0	1299	82	0.8375814	0.049852133	0.8375814	340.3467	0	20.257141						287	6	3	NaN	NaN	NaN	0.12876	1	7100	7100		58.599	17.139	1	64003			15106	4845	8766	8945	11946	11946					0.030063651776117695
LPLTFPDLL	9	Unmodified	_LPLTFPDLL_					0	0	0			REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.6026602007998	1	1028.60266	1027.59538	1.2797	0.0013163	2.9405	0.0030246	4.2201	0.0043408	1028.6062290313132	37.314	0.09613	37.314	37.265	37.362	0	129	43	1.5422925	0.02477467	1.5422925	313.01984	0	5.0281982						100	5	2	NaN	NaN	NaN	0.17818	1	9692	9692		26.732	6.1761	1	6645.9	+		15107	13219	8767	8946	11947	11947					0.08268985768222592
LPLTFPDLL	9	Unmodified						0	0	0			REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.60266	1027.59538	1.2797	0.0013163	2.9405	0.0030246	4.2201	0.0043408	1028.6062290313132	37.314	0.09613	37.314	37.265	37.362	0	129	43	1.5422925	0.02477467	1.5422925	313.01984		5.0281982	0.012207	-0.00053757	-0.00012504	NaN	26.732	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6645.9	+		15108	13219	8767	8946							0.08268985768222592
LPLTFPDLL	9	Unmodified						0	0	0			REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1028.60266	1027.59538	1.4183	0.0014589	4.291	0.0044137	5.7093	0.0058726	1028.6070102282058	37.287	0.072308	37.289	37.265	37.337	0.0022507	126	43	1.544062	0.024771929	1.5425426	313.37897		5.027649	-0.012207	0.00085156	0.00012504	NaN	26.732	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4746.5	+		15109	13219	8767	8946							0.08268985768222592
LPLVIEPLI	9	Unmodified	_LPLVIEPLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.6546957713	1	1006.6547	1005.64742	1.4753	0.0014851	-0.25256	-0.00025424	1.2227	0.0012309	1006.6535014094903	36.326	0.072258	36.326	36.302	36.374	0	156	61	1.5263584	0.035422325	1.5263584	309.87543	0	7.1913147						153	4	3	NaN	NaN	NaN	0.029744	1	8826	8826		59.445	23.409	1	16369			15110	3064	8768	8947	11948	11948					0.14482149181981185
LPLVIEPLI	9	Unmodified	_LPLVIEPLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.6546957713	1	1006.6547	1005.64742	1.7614	0.0017731	0.16729	0.0001684	1.9287	0.0019415	1006.6550137055169	36.324	0.072186	36.325	36.301	36.373	0.0011024	150	76	1.5299006	0.044261456	1.5283811	310.59457	0	8.985809						146	4	3	NaN	NaN	NaN	0.023074	1	8658	8658		68.108	23.861	1	15638			15111	3064	8768	8947	11949	11949					0.14482149181981185
LPLVKEVLL	9	Unmodified	_LPLVKEVLL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.3442606697001	2	512.344261	1022.67397	1.856	0.00095092	-0.89275	-0.0004574	0.96326	0.00049352	512.3439408231793	27.736	0.12067	27.736	27.688	27.808	0	1209	43	0.892844	0.025747418	0.892844	362.43716	0	10.451813						172	6	4	NaN	NaN	NaN	0.052553	1	9476	9476		45.827	2.8318	1	24923			15112	783	8769	8948	11950	11950					0.163538380733371
LPLVKEVLL	9	Unmodified	_LPLVKEVLL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.3442606697001	2	512.344261	1022.67397	0.84032	0.00043053	-1.3028	-0.00066747	-0.46247	-0.00023694	512.343430938335	27.783	0.09651	27.774	27.726	27.822	-0.009552	1206	43	0.894683	0.025747418	0.89316356	363.1837	0	10.451813						141	5	3	NaN	NaN	NaN	0.03533	1	9288	9288		53.14	3.179	1	25445			15113	783	8769	8948	11951	11951					0.163538380733371
LPLYEWKL	8	Unmodified	_LPLYEWKL_					0	0	0		ENST00000586588.5_1_19:10244028-10244166:-|nuORF	ENST00000586588.5_1_19:10244028-10244166:-|nuORF	ENST00000586588.5_1_19:10244028-10244166:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3051355092	2	531.305136	1060.59572	2.0148	0.0010705	-5.4626	-0.0029023	-3.4478	-0.0018318	531.3022755847807	22.308	0.26509	22.308	22.236	22.501	0	1251	64	0.8670771	0.038698435	0.8670771	351.8103	0	15.701599						385	12	4	NaN	NaN	NaN	0.65542	1	11145	11145		21.835	2.6714	1	88333			15114	7702	8770	8949	11952	11952					0.06784405488065204
LPMAVPILL	9	Unmodified	_LPMAVPILL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.6056370887003	1	966.605637	965.598361	1.4286	0.0013809	-0.084171	-8.136E-05	1.3444	0.0012995	966.60547280748	36.904	0.14433	36.904	36.856	37	0	219	70	1.4891195	0.040832996	1.4891195	302.48486	0	8.294403						225	7	3	NaN	NaN	NaN	0.015198	1	7514	7514		78.076	23.497	1	27719			15115	1001	8771	8950	11953	11953					0.11418537621409541
LPMAVPILL	9	Unmodified	_LPMAVPILL_					0	0	0		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.6056370887003	1	966.605637	965.598361	1.0439	0.001009	1.0568	0.0010215	2.1007	0.0020306	966.6058202953611	36.902	0.14416	36.904	36.856	37	0.0022469	219	73	1.4891195	0.042597055	1.4876001	302.48486	0	8.6527405						227	7	3	NaN	NaN	NaN	0.033463	1	7365	7365		54.579	9.9464	1	24586			15116	1001	8771	8950	11954	11954					0.11418537621409541
LPMAVPILL	9	Oxidation (M)	_LPM(Oxidation (M))AVPILL_		LPM(1)AVPILL		LPM(45)AVPILL	0	0	1		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.6005517108003	1	982.600552	981.593275	1.1946	0.0011738	-0.38717	-0.00038043	0.80741	0.00079336	982.5999907237474	33.287	0.096527	33.287	33.238	33.335	0	213	82	1.4926696	0.047929406	1.4926696	303.1365	0	9.733643						200	5	3	NaN	NaN	NaN	0.055365	1	7954	7954		44.632	8.8878	1	28579			15117	1001	8771	8951	11955	11955		108			0.1017423375880071
LPMAVPILL	9	Oxidation (M)	_LPM(Oxidation (M))AVPILL_		LPM(1)AVPILL		LPM(55)AVPILL	0	0	1		ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	ENST00000487231.5_1_17:26881240-26882135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.6005517108003	1	982.600552	981.593275	1.1072	0.001088	-0.57885	-0.00056878	0.5284	0.0005192	982.6006742506383	33.285	0.12064	33.283	33.235	33.355	-0.0024757	210	79	1.4944444	0.046156645	1.4929249	303.49692	0	9.373657						196	6	3	NaN	NaN	NaN	0.033463	1	7783	7783		54.579	9.9464	1	28349			15118	1001	8771	8951	11956	11956		108			0.1017423375880071
LPMEDQTPIWL	11	Unmodified	_LPMEDQTPIWL_					0	0	0		ENST00000575338.1_1_17:1989184-1998181:-|nuORF	ENST00000575338.1_1_17:1989184-1998181:-|nuORF	ENST00000575338.1_1_17:1989184-1998181:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8392134690502	2	671.839213	1341.66387	1.0001	0.0006719	-0.75436	-0.00050681	0.24574	0.0001651	671.8372658514735	30.632	0.12069	30.632	30.584	30.704	0	1188	76	0.90571284	0.04594034	0.90571284	366.49792	0	18.589813						231	6	5	NaN	NaN	NaN	0.76488	1	19438	19438		2.8895	0	1	14932			15119	7659	8772	8952	11957	11957					0.0067086228580137686
LPMEEELY	8	Unmodified	_LPMEEELY_					0	0	0			REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	REV__tr|U7STD3|U7STD3_FUSNUElongationfactorPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=efpPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2388009327	2	512.238801	1022.46305	1.4858	0.0007611	6.5801	0.0033706	8.066	0.0041317	512.7423363239567	30.245	0.072372	30.238	30.238	30.311	-0.0064106	1317	28	0.8265074	0.01661557	0.82498795	335.50964	0	6.7448425						52	4	2	NaN	NaN	NaN	0.80071	1	9260	9260		9.1232	3.429	1	3364.4	+		15120	13491	8773	8953	11958	11958					-0.04728407030881954
LPMFELVEL	9	Unmodified	_LPMFELVEL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5852955771	1	1090.5853	1089.57802	1.7489	0.0019074	-0.50975	-0.00055593	1.2392	0.0013514	1090.5843539473158	37.024	0.16851	37.024	36.952	37.121	0	63	67	1.5811787	0.038853288	1.5811787	320.67026	0	7.8796387						250	8	3	NaN	NaN	NaN	0.056143	1	12382	12382		44.302	13.692	1	27160			15121	4617	8774	8954	11959	11959					0.0368132217092807
LPMFELVEL	9	Unmodified	_LPMFELVEL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000475693.1_1_2:242607884-242611676:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5852955771	1	1090.5853	1089.57802	0.90941	0.00099179	-0.35328	-0.00038528	0.55613	0.00060651	1090.5848920652631	37.022	0.16838	37.024	36.952	37.121	0.0022507	66	67	1.579413	0.038853288	1.5778936	320.31216	0	7.8796387						251	8	4	NaN	NaN	NaN	0.074859	1	12077	12077		39.459	8.8486	1	23473			15122	4617	8774	8954	11960	11960					0.0368132217092807
LPMPTEPLL	9	Unmodified	_LPMPTEPLL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7831786466	2	505.783179	1009.5518	1.2432	0.00062877	-1.4741	-0.00074558	-0.23094	-0.0001168	505.78209523319686	30.704	0.096531	30.704	30.656	30.753	0	1314	37	0.8283535	0.022150517	0.8283535	336.31622	0	8.993225						67	5	2	NaN	NaN	NaN	0.3389	1	8968	8968		16.417	3.4138	1	5065.7			15123	1455	8775	8955	11961	11961					0.047410529994408535
LPMPTEPLL	9	Unmodified	_LPMPTEPLL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5590808266	1	1010.55908	1009.5518	1.4258	0.0014409	-0.8954	-0.00090486	0.5304	0.000536	1010.5592908396934	30.68	0.096516	30.68	30.632	30.728	0	222	100	1.4873441	0.058561683	1.4873441	301.93912	0	11.888367						432	5	4	NaN	NaN	NaN	0.018156	1	8969	8969		74.332	15.733	1	85111			15124	1455	8775	8955	11962	11962					0.047410529994408535
LPMPTEPLL	9	Unmodified	_LPMPTEPLL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5590808266	1	1010.55908	1009.5518	1.4684	0.0014839	-1.2037	-0.0012164	0.26474	0.00026754	1010.558836461806	30.679	0.12066	30.673	30.601	30.722	-0.0057545	222	100	1.4873441	0.058561683	1.4858247	301.93915	0	11.888367						500	6	4	NaN	NaN	NaN	0.0047854	1	8798	8798		103.03	44.427	1	90578			15125	1455	8775	8955	11963	11963					0.047410529994408535
LPMPTEPLL	9	Unmodified						0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.783179	1009.5518	1.2923	0.00065364	-2.4215	-0.0012247	-1.1291	-0.0005711	505.78207891888246	30.655	0.096514	30.649	30.625	30.722	-0.0057545	1311	28	0.83019954	0.016613781	0.8286801	337.0657		6.74527	-0.02753	-0.00040412	0.00016327	NaN	16.417	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5102.5			15126	1455	8775	8955							0.047410529994408535
LPMSDQYVKL	10	Unmodified	_LPMSDQYVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3153742320001	2	597.315374	1192.6162	1.6739	0.00099982	-3.9165	-0.0023394	-2.2427	-0.0013396	597.3136411867089	23.296	0.096457	23.296	23.272	23.369	0	1194	67	0.902037	0.04042965	0.902037	365.47522	0	16.380737						216	5	4	NaN	NaN	NaN	0.3495	1	16227	16227		25.694	13.125	1	33996			15127	677	8776	8956	11964	11964					0.02759208085581122
LPMSDQYVKL	10	Unmodified	_LPMSDQYVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3153742320001	2	597.315374	1192.6162	1.3958	0.00083372	-3.199	-0.0019108	-1.8032	-0.0010771	597.3139172291772	23.32	0.14476	23.307	23.283	23.427	-0.013296	1197	58	0.9001988	0.034918368	0.8986794	364.73044	0	14.147766						208	7	3	NaN	NaN	NaN	0.26962	1	15612	15612		29.547	19.186	1	33666			15128	677	8776	8956	11965	11965					0.02759208085581122
LPMVPIVAL	9	Oxidation (M)	_LPM(Oxidation (M))VPIVAL_		LPM(1)VPIVAL		LPM(55)VPIVAL	0	0	1		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5849016466002	1	968.584902	967.577625	1.4596	0.0014137	0.19884	0.00019259	1.6584	0.0016063	968.5855115691664	32.418	0.096527	32.418	32.394	32.49	0	255	52	1.4678029	0.030216217	1.4678029	298.14624	0	6.1376343						179	5	3	NaN	NaN	NaN	0.033463	1	7549	7549		54.579	9.9464	1	16249			15129	4401	8777	8957	11966	11966		471			0.09253947241734295
LPMVPIVAL	9	Unmodified	_LPMVPIVAL_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.5899870245001	1	952.589987	951.582711	0.7988	0.00076093	-0.083528	-7.9568E-05	0.71527	0.00068136	952.5901536277449	35.48	0.096542	35.481	35.457	35.553	0.00052643	255	61	1.4678029	0.03555417	1.4662834	298.21658	0	7.2236023						137	5	3	NaN	NaN	NaN	0.055365	1	6997	6997		44.632	0	1	14578			15130	4401	8777	8958	11967	11967					0.10498251104343126
LPMVPIVAL	9	Unmodified						0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	952.589987	951.582711	0.90053	0.00085783	0.80619	0.00076797	1.7067	0.0016258	952.5902869533986	35.506	0.072388	35.506	35.482	35.554	0	258	76	1.4660252	0.044454455	1.4660252	297.85544		9.031891	0.012543	0.00045165	-0.00012909	NaN	44.632	141	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15092			15131	4401	8777	8958							0.10498251104343126
LPNAESNG	8	Unmodified	_LPNAESNG_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.3737228972001	1	801.373723	800.366446	2.3167	0.0018565	4.7713	0.0038236	7.088	0.0056801	801.3779223681398	21.85	0.07218	21.85	21.802	21.874	0	513	28	1.3142352	0.016143918	1.3142352	267.73462	0	3.2888184						44	4	2	NaN	NaN	NaN	0.78967	1	4749	4749		10.605	0	1	2544.2			15132	2380	8778	8959	11968	11968					-0.04172213475806075
LPNASADSL	9	Unmodified	_LPNASADSL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	887.4468878403001	1	887.446888	886.439611	2.0034	0.0017779	-1.2988	-0.0011526	0.70457	0.00062526	887.4453421971212	20.045	0.096138	20.045	19.997	20.093	0	423	37	1.3679651	0.021455288	1.3679651	278.2236	0	4.363678						63	5	3	NaN	NaN	NaN	0.3947	1	5892	5892		13.949	1.9001	1	4572.2			15133	612	8779	8960	11969	11969					-0.008150847531851468
LPNASADSL	9	Unmodified	_LPNASADSL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4468878403001	1	887.446888	886.439611	2.2776	0.0020213	-3.3188	-0.0029453	-1.0412	-0.00092398	887.4452108115395	20.044	0.024073	20.03	20.03	20.054	-0.014141	423	43	1.3679651	0.025031209	1.3664457	278.2236	0	5.090973						45	2	2	NaN	NaN	NaN	0.19268	1	5768	5768		25.801	8.002	1	3556.4			15134	612	8779	8960	11970	11970					-0.008150847531851468
LPNELIELL	9	Unmodified	_LPNELIELL_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.6190385465	1	1053.61904	1052.61176	1.0575	0.0011142	-1.7381	-0.0018313	-0.68063	-0.00071713	1053.6160807946571	35.36	0.24117	35.361	35.288	35.529	0.00053024	114	82	1.5511382	0.047746778	1.5496187	314.71606	0	9.6875						374	11	4	NaN	NaN	NaN	0.0021374	1	10537	10537		110.61	12.756	1	54077			15135	170;3312	8780	8961	11971	11971					0.08756066934324735
LPNELIELL	9	Unmodified						0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1053.61904	1052.61176	1.3869	0.0014613	-0.92064	-0.00097	0.46627	0.00049127	1053.6175180980224	35.361	0.16884	35.361	35.313	35.482	0	117	76	1.5493695	0.044214606	1.5493695	314.3572		8.970856	0.00038885	0.00047607	-0.00012467	NaN	110.61	308	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54367			15136	170;3312	8780	8961							0.08756066934324735
LPNFLAVAL	9	Unmodified	_LPNFLAVAL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.5767798013	1	957.57678	956.569503	0.97083	0.00092964	-0.59077	-0.00056571	0.38006	0.00036393	957.5764151223375	35.747	0.16878	35.747	35.651	35.82	0	234	61	1.4802408	0.035527706	1.4802408	300.72128	0	7.2177124						238	8	3	NaN	NaN	NaN	0.043119	1	7262	7262		49.833	10.915	1	24335			15137	3608	8781	8962	11972	11972					0.0894813631659872
LPNFLAVAL	9	Unmodified	_LPNFLAVAL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.5767798013	1	957.57678	956.569503	1.0432	0.00099895	-0.97206	-0.00093083	0.071141	6.8123E-05	957.5757722690691	35.746	0.16869	35.746	35.65	35.819	0.00053024	234	64	1.4802408	0.037298203	1.4787214	300.72128	0	7.577362						269	8	3	NaN	NaN	NaN	0.043119	1	7124	7124		49.833	10.915	1	31534			15138	3608	8781	8962	11973	11973					0.0894813631659872
LPNNPAFGFV	10	Unmodified	_LPNNPAFGFV_					0	0	0		nc|ENSG00000149639|O94964-3|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5571069917	1	1075.55711	1074.54983	1.1054	0.0011889	0.63905	0.00068733	1.7444	0.0018762	1075.5559085588009	31.718	0.048258	31.718	31.67	31.718	0	105	70	1.5564433	0.040690303	1.5564433	315.70905	0	8.253662						59	3	2	NaN	NaN	NaN	0.62764	1	11751	11751		13.003	2.6427	1	3402.3			15139	3690	8782	8963	11974	11974					0.01553760305864671
LPNNPAFGFV	10	Unmodified						0	0	0		nc|ENSG00000149639|O94964-3|MTCL2;nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1075.55711	1074.54983	1.7444	0.0018762	0.26012	0.00027977	2.0045	0.002156	1075.5564846959237	31.693	0.096588	31.688	31.688	31.785	-0.0044174	102	46	1.5582114	0.026511908	1.556692	316.06766		5.3776855	-0.014823	-0.00019558	0.00012429	NaN	13.003	43	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2581.6			15140	3690	8782	8963							0.01553760305864671
LPNPEYYTL	9	Unmodified	_LPNPEYYTL_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;ENST00000462593.1_1_20:45016251-45022719:-|nuORF;ENST00000488853.5_1_20:45014901-45023130:-|nuORF	ENSG00000062598|ENST00000290246|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.5513529118	1	1109.55135	1108.54408	1.6875	0.0018724	0.55568	0.00061656	2.2432	0.002489	1109.5525549200288	26.722	0.097029	26.722	26.698	26.795	0	96	73	1.5617468	0.04241228	1.5617468	316.6616	0	8.599579						187	5	2	NaN	NaN	NaN	0.030545	1	13228	13228		58.398	29.903	1	19045			15141	652	8783	8964	11975	11975					-0.005853829964735269
LPNPEYYTL	9	Unmodified	_LPNPEYYTL_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;ENST00000462593.1_1_20:45016251-45022719:-|nuORF;ENST00000488853.5_1_20:45014901-45023130:-|nuORF	ENSG00000062598|ENST00000290246|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1109.5513529118	1	1109.55135	1108.54408	0.92323	0.0010244	0.38533	0.00042755	1.3086	0.0014519	1109.550684113992	26.746	0.12067	26.735	26.687	26.808	-0.010645	96	76	1.5617468	0.044186592	1.5602274	316.6616	0	8.95932						219	6	3	NaN	NaN	NaN	0.21451	1	12850	12850		24.4	7.5419	1	18044			15142	652	8783	8964	11976	11976					-0.005853829964735269
LPNTDVPIL	9	Unmodified	_LPNTDVPIL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.5615236676002	1	981.561524	980.554247	1.7678	0.0017352	0.33715	0.00033093	2.1049	0.0020661	981.5614663593566	28.725	0.096535	28.725	28.677	28.774	0	228	46	1.4837929	0.026641488	1.4837929	301.3382	0	5.4105225						115	5	2	NaN	NaN	NaN	0.31471	1	7906	7906		17.97	2.507	1	13026			15143	2893	8784	8965	11977	11977					0.06319224728770223
LPNTDVPIL	9	Unmodified						0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;ENSG00000134759|ENST00000358232|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	981.561524	980.554247	1.493	0.0014655	-2.1805	-0.0021403	-0.68751	-0.00067483	981.5619368723616	28.725	0.12065	28.716	28.668	28.789	-0.0083504	231	55	1.4820169	0.03196132	1.4804975	300.97754		6.4909363	-0.0045524	-0.0017836	-0.0016477	NaN	17.97	159	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14118			15144	2893	8784	8965							0.06319224728770223
LPNYEDDLL	9	Unmodified	_LPNYEDDLL_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5255320918	1	1091.52553	1090.51826	2.0757	0.0022656	0.58928	0.00064322	2.665	0.0029089	1091.5274615063013	27.736	0.096546	27.736	27.712	27.808	0	87	70	1.5670487	0.04065156	1.5670487	317.80118	0	8.244232						112	5	2	NaN	NaN	NaN	0.097143	1	12422	12422		36.235	13.117	1	10410			15145	1871	8785	8966	11978	11978					-0.023382772387549267
LPNYEDDLL	9	Unmodified	_LPNYEDDLL_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5255320918	1	1091.52553	1090.51826	1.0843	0.0011835	-1.2591	-0.0013743	-0.17481	-0.00019081	1091.5262501016327	27.735	0.12065	27.726	27.702	27.822	-0.009552	87	67	1.5670487	0.03887379	1.5655292	317.8012	0	7.8836975						120	6	2	NaN	NaN	NaN	0.1507	1	12113	12113		28.495	7.982	1	10217			15146	1871	8785	8966	11979	11979					-0.023382772387549267
LPPCGLWP	8	Unmodified	_LPPCGLWP_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.7307491456	2	441.730749	881.446945	1.1185	0.00049407	4.1669	0.0018406	5.2854	0.0023347	441.73261266685466	30.679	0.14474	30.673	30.625	30.77	-0.0057545	1377	28	0.7895419	0.016653419	0.78802246	321.1841	0	6.7745667						74	7	2	NaN	NaN	NaN	0.83849	1	5701	5701		4.0537	0	1	5641.4	+		15147	12714	8786	8967	11980	11980					0.0014797631353076213
LPPCGLWP	8	Unmodified						0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	441.730749	881.446945	0.745	0.00032909	5.4358	0.0024012	6.1808	0.0027303	441.73343110282923	30.68	0.072378	30.68	30.656	30.728	0	1377	31	0.7895419	0.018502772	0.7895419	321.1841		7.526886	0.0033941	0.00067247	0.00075972	NaN	4.0537	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4477.4	+		15148	12714	8786	8967							0.0014797631353076213
LPPCGLWP	8	Unmodified						0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	441.730749	881.446945	1.1185	0.00049407	4.1669	0.0018406	5.2854	0.0023347	441.73261266685466	30.679	0.14474	30.673	30.625	30.77	-0.0057545	1377	28	0.7895419	0.016653419	0.78802246	321.1841		6.7745667	-0.0033941	-0.00044859	-0.00075972	NaN	4.0537	74	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5641.4	+		15149	12714	8786	8967							0.0014797631353076213
LPPEMEVAL	9	Unmodified	_LPPEMEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.76498589345005	2	499.764986	997.515419	0.89788	0.00044873	-2.2784	-0.0011387	-1.3805	-0.00068993	499.7642290455014	28.507	0.24129	28.499	28.403	28.644	-0.0083485	1296	67	0.8394264	0.04060483	0.83790696	340.86716	0	16.488495						352	11	3	NaN	NaN	NaN	0.20577	1	8301	8301		24.961	9.7856	1	31411			15150	553	8787	8968	11981	11981					0.016561761027446664
LPPEMEVAL	9	Unmodified	_LPPEMEVAL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5226953203002	1	998.522695	997.515419	1.3449	0.0013429	-0.40326	-0.00040266	0.94159	0.0009402	998.5211119196415	28.483	0.14475	28.475	28.475	28.62	-0.0083504	183	133	1.510409	0.07812786	1.5088896	306.67126	0	15.862946						348	7	2	NaN	NaN	NaN	0.25448	1	8304	8304		21.835	6.0131	1	35269			15151	553	8787	8968	11982	11982					0.016561761027446664
LPPEYVHINH	10	Unmodified	_LPPEYVHINH_					0	0	0			REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF	REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.8169300035001	2	609.81693	1217.61931	0.39434	0.00024048	5.326	0.0032479	5.7204	0.0034884	609.8201415572784	35.072	0.072388	35.072	35.048	35.12	0	1164	64	0.9204082	0.03856486	0.9204082	372.83096	0	15.621521						77	4	2	NaN	NaN	NaN	0.76548	1	16935	16935		3.5698	0	1	5193.3	+		15152	11921	8788	8969	11983	11983					0.01920219254634503
LPPEYVHINH	10	Unmodified						0	0	0			REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF	REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.81693	1217.61931	0.39434	0.00024048	5.326	0.0032479	5.7204	0.0034884	609.8201415572784	35.072	0.072388	35.072	35.048	35.12	0	1164	64	0.9204082	0.03856486	0.9204082	372.83096		15.621521	0	0	0	NaN	3.5698	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5193.3	+		15153	11921	8788	8969							0.01920219254634503
LPPGEWEL	8	Unmodified	_LPPGEWEL_					0	0	0		ENST00000487626.1_1_3:111904329-111904731:-|nuORF;ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4774596871999	1	940.47746	939.470183	2.1673	0.0020383	-0.37778	-0.00035529	1.7895	0.001683	940.4767798007599	28.001	0.82045	28.001	27.688	28.508	0	333	139	1.4215236	0.08203578	1.4215236	288.86703	0	16.67044						1629	35	4	NaN	NaN	NaN	0.14214	1	6809	6809		55.947	18.645	1	635540			15154	4224	8789	8970	11984	11984					-0.0019730636815893376
LPPGEWEL	8	Unmodified	_LPPGEWEL_					0	0	0		ENST00000487626.1_1_3:111904329-111904731:-|nuORF;ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	ENST00000487626.1_1_3:111904329-111904731:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4774596871999	1	940.47746	939.470183	2.162	0.0020334	-0.85767	-0.00080662	1.3044	0.0012267	940.4764993010762	27.977	0.74816	27.968	27.726	28.474	-0.0089798	333	145	1.4215236	0.08562076	1.4200041	288.86707	0	17.398926						1645	32	3	NaN	NaN	NaN	0.19946	1	6672	6672		50.033	8.248	1	664530			15155	4224	8789	8970	11985	11985					-0.0019730636815893376
LPPGEYIL	8	Unmodified	_LPPGEYIL_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.5029461562002	1	901.502946	900.49567	1.6747	0.0015098	-0.42165	-0.00038011	1.2531	0.0011296	901.5033203118572	27.495	0.26554	27.495	27.302	27.567	0	342	79	1.4161754	0.046363115	1.4161754	287.96014	0	9.427307						349	12	2	NaN	NaN	NaN	0.19946	1	6095	6095		50.033	0	1	49948			15156	4189	8790	8971	11986	11986					0.04144168154300587
LPPGEYIL	8	Unmodified	_LPPGEYIL_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.5029461562002	1	901.502946	900.49567	1.4047	0.0012664	-1.1027	-0.00099408	0.30205	0.0002723	901.5025675292219	27.47	0.26547	27.46	27.291	27.557	-0.0095501	336	85	1.419741	0.0499295	1.4182216	288.68515	0	10.152466						318	12	2	NaN	NaN	NaN	0.54545	1	5977	5977		28.667	0	1	45793			15157	4189	8790	8971	11987	11987					0.04144168154300587
LPPGVLTPD	9	Unmodified	_LPPGVLTPD_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	908.5087598156	1	908.50876	907.501483	1.7438	0.0015843	0.78804	0.00071595	2.5319	0.0023002	908.5095330444644	24.623	0.12057	24.61	24.61	24.731	-0.012394	348	76	1.412609	0.044563293	1.4110895	287.20157	0	9.060303						192	6	2	NaN	NaN	NaN	0.14945	1	6078	6078		28.667	5.3321	1	13081	+		15158	9547	8791	8972	11988	11988					0.04403266665940464
LPPPALGT	8	Unmodified	_LPPPALGT_					0	0	0			REV__PSMC2|p.A76P|1|0.12|ENSG00000161057|chr7:103355729-103355729|G/C|missense_variant	REV__PSMC2|p.A76P|1|0.12|ENSG00000161057|chr7:103355729-103355729|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.4505166552002	1	765.450517	764.44324	0.89837	0.00068766	5.6445	0.0043206	6.5429	0.0050082	765.4549905800867	33.48	0.096516	33.48	33.456	33.552	0	501	52	1.3214091	0.030490756	1.3214091	269.40933	0	6.2164917						100	5	2	NaN	NaN	NaN	0.84207	1	4281	4281		3.5732	0	1	8984.9	+		15159	13300	8792	8973	11989	11989					0.05159629811339528
LPPPSEELAL	10	Unmodified	_LPPPSEELAL_					0	0	0		nc|ENSG00000211890|P01877-1|IGHA2;nc|ENSG00000211895|P01876-1|IGHA1;nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877-1|IGHA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5826530401998	1	1065.58265	1064.57538	1.6989	0.0018103	-1.0628	-0.0011325	0.63612	0.00067784	1065.5817226828103	26.77	0.14528	26.77	26.698	26.843	0	126	64	1.544062	0.037152052	1.544062	313.2348	0	7.5368347						204	7	2	NaN	NaN	NaN	0.41164	1	11341	11341		23.118	6.5334	1	24142			15160	8029	8793	8974	11990	11990					0.04567190037596447
LPPPSEELAL	10	Unmodified						0	0	0		nc|ENSG00000211890|P01877-1|IGHA2;nc|ENSG00000211895|P01876-1|IGHA1;nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877-1|IGHA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1065.58265	1064.57538	1.033	0.0011007	0.28119	0.00029963	1.3141	0.0014003	1065.5826433274085	26.77	0.24133	26.759	26.687	26.928	-0.010645	123	64	1.5458313	0.037152052	1.5443119	313.59372		7.536804	-0.0055207	0.00061937	0.00012495	NaN	23.118	284	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22268			15161	8029	8793	8974							0.04567190037596447
LPPWASHHRG	10	Unmodified	_LPPWASHHRG_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3017814658	2	579.301781	1156.58901	1.3772	0.00079782	-7.7829	-0.0045086	-6.4057	-0.0037108	579.2958943316211	26.456	0.19301	26.445	26.421	26.614	-0.011137	1206	79	0.894683	0.04777533	0.89316356	362.62476	0	19.363861						207	9	2	NaN	NaN	NaN	0.65442	1	14538	14538		11.17	0.56537	1	24099			15162	2950	8794	8975	11991	11991					0.01697905380069642
LPPWLQDPEL	10	Unmodified	_LPPWLQDPEL_					0	0	0		ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.3215138549	2	604.321514	1206.62847	1.3342	0.0008063	-1.4163	-0.00085588	-0.08205	-4.9584E-05	604.3206397283201	32.37	0.28957	32.37	32.297	32.587	0	1200	106	0.89836043	0.06430954	0.89836043	363.93723	0	26.052612						933	13	4	NaN	NaN	NaN	0.10101	1	16653	16653		45.827	21.265	1	185220			15163	3827	8795	8976	11992	11992					0.03342567820277509
LPPWLQDPEL	10	Unmodified	_LPPWLQDPEL_					0	0	0		ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	ENSG00000154124|ENST00000284274|OTULIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.3215138549	2	604.321514	1206.62847	0.77961	0.00047113	-0.7904	-0.00047765	-0.010787	-6.5186E-06	604.3208831841184	32.369	0.2896	32.365	32.268	32.558	-0.0037613	1197	97	0.9001988	0.05880046	0.8986794	364.68198	0	23.820831						918	13	4	NaN	NaN	NaN	0.050502	1	15987	15987		52.78	33.616	1	185030			15164	3827	8795	8976	11993	11993					0.03342567820277509
LPQELMAL	8	Unmodified	_LPQELMAL_					0	0	0			REV__ENST00000461423.1_1_20:37137783-37175090:+|nuORF	REV__ENST00000461423.1_1_20:37137783-37175090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5015659477	1	914.501566	913.494289	1.9432	0.0017771	-5.4995	-0.0050293	-3.5562	-0.0032522	914.495766811315	30.198	0.16892	30.198	30.173	30.342	0	330	88	1.4233059	0.051665902	1.4233059	289.34805	0	10.503296						302	8	3	NaN	NaN	NaN	0.47456	1	6297	6297		32.453	5.7212	1	45625	+		15165	10585	8796	8977	11994	11994					0.03408210793861599
LPQHPDVEM	9	Unmodified	_LPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.25531666415	2	533.255317	1064.49608	2.5654	0.001368	-2.123	-0.0011321	0.44247	0.00023595	533.2544061531925	18.46	0.26385	18.46	18.292	18.556	0	1290	61	0.84311575	0.036889493	0.84311575	342.07208	0	14.966949						201	12	2	NaN	NaN	NaN	0.10945	1	11320	11320		34.454	13.941	1	44412			15166	4072	8797	8978	11995	11995					-0.03358780188182209
LPQHPDVEM	9	Unmodified	_LPQHPDVEM_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.25531666415	2	533.255317	1064.49608	1.5285	0.00081509	-0.5604	-0.00029884	0.96811	0.00051625	533.2549778090531	18.482	0.19201	18.468	18.396	18.588	-0.01395	1290	61	0.84311575	0.03688556	0.8415963	342.07208	0	14.965332						293	9	4	NaN	NaN	NaN	0.03533	1	11058	11058		53.14	20.688	1	47057			15167	4072	8797	8978	11996	11996					-0.03358780188182209
LPQHPDVEM	9	Oxidation (M)	_LPQHPDVEM(Oxidation (M))_		LPQHPDVEM(1)		LPQHPDVEM(75)	0	0	1		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2527739752	2	541.252774	1080.491	1.2968	0.00070192	-2.2969	-0.0012432	-1.0001	-0.00054129	541.2514341212805	15.076	0.24034	15.064	14.944	15.184	-0.011738	1290	55	0.84311575	0.03320414	0.8415963	342.00742	0	13.469177						402	11	4	NaN	NaN	NaN	0.017558	1	11675	11675		75.089	41.664	1	73094			15168	4072	8797	8979	11997	11997		438			-0.04603084050813777
LPQKGDVEM	9	Unmodified	_LPQKGDVEM_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;ENST00000587197.1_1_19:10250720-10250849:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7576921776	2	508.757692	1015.50083	1.9727	0.0010036	-1.2377	-0.0006297	0.735	0.00037394	508.7574746602063	15.891	0.071828	15.879	15.831	15.903	-0.012611	1320	37	0.824661	0.022162437	0.8231416	334.79065	0	8.9973755						73	4	2	NaN	NaN	NaN	0.40649	1	9018	9018		13.463	1.9146	1	8879.1			15169	2674	8798	8980	11998	11998					-0.00629896045404621
LPQLEHCS	8	Unmodified	_LPQLEHCS_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1;ENST00000486434.1_1_6:29573315-29574216:-|nuORF	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4400283234	1	926.440028	925.432752	2.1374	0.0019801	2.3244	0.0021534	4.4618	0.0041336	926.4422342154654	30.004	0.33792	30.004	29.86	30.198	0	1164	85	0.9204082	0.051422596	0.9204082	187.07663	0	10.4518585						450	15	2	NaN	NaN	NaN	0.84756	1	6499	6499		1.072	0	1	33407			15170	5904	8799	8981	11999	11999					-0.03294720905410031
LPQPSSIVL	9	Unmodified	_LPQPSSIVL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.5666090455001	1	953.566609	952.559333	1.7966	0.0017132	-0.52471	-0.00050035	1.2719	0.0012128	953.5660702344686	27.543	0.21719	27.543	27.495	27.712	0	267	163	1.4606913	0.096057415	1.4606913	296.76736	0	19.51593						642	10	5	NaN	NaN	NaN	0.052553	1	7157	7157		45.827	5.6728	1	208000			15171	496	8800	8982	12000	12000					0.08115528591372367
LPQPTEINL	9	Unmodified	_LPQPTEINL_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.567337327	1	1024.56734	1023.56006	2.6381	0.002703	0.34722	0.00035576	2.9854	0.0030587	1024.5672802446607	26.119	0.096558	26.119	26.07	26.167	0	198	73	1.5015416	0.042583466	1.5015416	304.76508	0	8.643097						222	5	3	NaN	NaN	NaN	0.017558	1	9521	9521		75.089	32.094	1	28694			15172	1847	8801	8983	12001	12001					0.04922323240418791
LPQPTEINL	9	Unmodified	_LPQPTEINL_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L;nc|ENSG00000112031|Q9UGC7-4|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.567337327	1	1024.56734	1023.56006	2.1034	0.0021551	-0.54584	-0.00055925	1.5576	0.0015958	1024.5664244391226	26.118	0.096565	26.107	26.059	26.156	-0.011137	195	76	1.5033154	0.044355392	1.501796	305.12512	0	9.002747						233	5	4	NaN	NaN	NaN	0.04743	1	9337	9337		48.002	0	1	28301			15173	1847	8801	8983	12002	12002					0.04922323240418791
LPQQVQPSL	9	Unmodified	_LPQQVQPSL_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.567671678	1	1009.56767	1008.5604	1.8306	0.0018482	-1.3502	-0.0013632	0.48041	0.00048501	1009.5679880398801	21.778	0.072231	21.778	21.754	21.826	0	234	46	1.4802408	0.02664435	1.4802408	300.5011	0	5.409027						71	4	2	NaN	NaN	NaN	0.2345	1	8930	8930		23.118	2.6689	1	5265.1			15174	1240	8802	8984	12003	12003					0.056457429602687625
LPQQVQPSL	9	Unmodified	_LPQQVQPSL_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.567671678	1	1009.56767	1008.5604	1.9254	0.0019438	-1.2509	-0.0012628	0.6745	0.00068096	1009.5667939236854	21.778	0.072165	21.764	21.74	21.812	-0.013895	234	58	1.4802408	0.033745885	1.4787214	300.5011	0	6.850708						70	4	2	NaN	NaN	NaN	0.032689	1	8759	8759		55.592	8.1101	1	5687.1			15175	1240	8802	8984	12004	12004					0.056457429602687625
LPQSDASLL	9	Unmodified	_LPQSDASLL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971	1	943.509488	942.502212	1.7668	0.001667	-1.0941	-0.0010323	0.6727	0.0006347	943.5095930988895	24.212	0.14474	24.199	24.127	24.272	-0.012749	288	46	1.4482387	0.02669251	1.4467193	294.28217	0	5.4239197						115	7	2	NaN	NaN	NaN	0.059222	1	6746	6746		42.995	16.88	1	8973.9			15176	2208	8803	8985	12005	12005					0.028660613149895653
LPQSKETLL	9	Unmodified	_LPQSKETLL_					0	0	0		ENST00000482295.1_1_9:136213358-136213517:-|nuORF;nc|ENSG00000148297|Q15528-2|MED22;ENSG00000148297|ENST00000343730|MED22	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.8029569610001	2	514.802957	1027.59136	1.424	0.00073307	-1.6887	-0.00086935	-0.26473	-0.00013628	514.8023333275663	19.154	0.19229	19.14	19.092	19.284	-0.014141	1245	82	0.87076044	0.049755156	0.869241	353.45023	0	20.196106						297	9	4	NaN	NaN	NaN	0.10945	1	9501	9501		34.454	8.339	1	55708			15177	3624	8804	8986	12006	12006					0.0786689627452688
LPQWGDRKT	9	Unmodified	_LPQWGDRKT_					0	0	0		ENST00000524672.2_1_11:67946983-67947076:-|nuORF	ENST00000524672.2_1_11:67946983-67947076:-|nuORF	ENST00000524672.2_1_11:67946983-67947076:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7959975961501	2	550.795998	1099.57744	1.4068	0.00077486	-10.925	-0.0060176	-9.5184	-0.0052427	551.2912391281685	25.033	0.1689	25.033	24.985	25.153	0	1239	61	0.87444305	0.03684169	0.87444305	354.63776	0	14.941467						166	8	2	NaN	NaN	NaN	0.27608	1	12832	12832		20.449	4.032	1	34752			15178	7417	8805	8987	12007	12007					0.03163663566078867
LPQWLLLL	8	Unmodified	_LPQWLLLL_					0	0	0		ENSG00000204140|ENST00000373861|CLPSL1	ENSG00000204140|ENST00000373861|CLPSL1	ENSG00000204140|ENST00000373861|CLPSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.3180459192001	2	498.318046	994.621539	1.7461	0.00087013	-5.2117	-0.0025971	-3.4656	-0.001727	498.3156056811396	25.732	0.072393	25.721	25.696	25.769	-0.0116	1293	43	0.84127116	0.02582264	0.8397517	341.62982	0	10.486267						111	4	4	NaN	NaN	NaN	0.78264	1	8217	8217		11.548	0.58334	1	15240			15179	5864	8806	8988	12008	12008					0.12401299730379378
LPQYDFVF	8	Unmodified	_LPQYDFVF_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5087598156	1	1028.50876	1027.50148	1.4786	0.0015207	-0.65502	-0.0006737	0.82357	0.00084705	1028.5075958451364	32.08	0.21715	32.08	32.032	32.249	0	207	64	1.496219	0.037266493	1.496219	303.66928	0	7.5635376						301	10	3	NaN	NaN	NaN	0.23186	1	9661	9661		47.482	20.75	1	39122			15180	5157	8807	8989	12009	12009					-0.01116733334060882
LPQYDFVF	8	Unmodified	_LPQYDFVF_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5087598156	1	1028.50876	1027.50148	0.76554	0.00078736	0.93728	0.000964	1.7028	0.0017514	1028.5092695198412	32.079	0.19303	32.075	32.027	32.22	-0.0037613	204	67	1.4979934	0.039039016	1.496474	304.0294	0	7.923279						277	9	3	NaN	NaN	NaN	0.20037	1	9472	9472		49.961	17.509	1	37208			15181	5157	8807	8989	12010	12010					-0.01116733334060882
LPQYDFVF	8	Unmodified						0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;CIITA|p.P452S|1|0.36|ENSG00000179583|chr16:10906846-10906846|C/T|missense_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1028.50876	1027.50148	0.89338	0.00091885	-1.2377	-0.001273	-0.3443	-0.00035411	1029.5091346325244	31.91	0.0965	31.906	31.858	31.954	-0.0037613	174	52	1.5157272	0.030139327	1.5142077	307.6286		6.1170044	-0.086887	-0.00051281	0.0089943	NaN	47.482	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7122.3			15182	5157	8807	8989							-0.01116733334060882
LPQYKEREV	9	Unmodified	_LPQYKEREV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.8802673742	3	387.880267	1160.61897	1.7259	0.00066945	-1.7175	-0.00066617	0.0084547	3.2794E-06	387.87978251019325	14.069	0.048008	14.069	14.069	14.117	0	1488	43	0.7209441	0.026010871	0.7209441	438.28732	0	15.812927						62	3	2	NaN	NaN	NaN	0.30554	1	15181	15181		18.558	11.941	1	4576.9			15183	4489	8808	8990	12011	12011					0.04508799534755781
LPQYKEREV	9	Unmodified						0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	387.880267	1160.61897	1.5796	0.0006127	-0.31809	-0.00012338	1.2615	0.00048932	387.8803291323933	14.117	0.071879	14.106	14.082	14.154	-0.010672	1485	79	0.72280174	0.048311174	0.7212823	439.41663		29.370056	0.018562	0.00066146	0.00016909	NaN	18.558	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6983.3			15184	4489	8808	8990							0.04508799534755781
LPQYPPPF	8	Unmodified	_LPQYPPPF_					0	0	0			REV__ENSG00000008196|ENST00000393655|TFAP2B	REV__ENSG00000008196|ENST00000393655|TFAP2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5032805072001	1	958.503281	957.496004	1.2605	0.0012081	-2.9937	-0.0028694	-1.7332	-0.0016613	958.5004173765002	27.471	0.096554	27.471	27.446	27.543	0	312	103	1.433996	0.060583472	1.433996	291.3223	0	12.3078						146	5	2	NaN	NaN	NaN	0.82332	1	7276	7276		6.0903	0	1	13032	+		15185	8383	8809	8991	12012	12012					0.015555878741338347
LPRACYLV	8	Unmodified	_LPRACYLV_					0	0	0		ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.76258059024997	2	467.762581	933.510608	0.62711	0.00029334	-2.1996	-0.0010289	-1.5725	-0.00073557	467.76180678041857	26.36	0.21715	26.349	26.252	26.469	-0.011135	1209	55	0.892844	0.033110976	0.8913246	362.8965	0	13.457947						264	10	3	NaN	NaN	NaN	0.76633	1	6550	6550		13.737	0	1	30713			15186	393	8810	8992	12013	12013					0.0411933675062528
LPRACYLV	8	Unmodified						0	0	0		ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	467.762581	933.510608	1.5413	0.00072096	-4.0565	-0.0018975	-2.5152	-0.0011765	467.76051352365164	26.336	0.19307	26.336	26.239	26.432	0	1212	52	0.8910048	0.031273186	0.8910048	362.14896		12.710968	-0.0063622	-0.00091776	-0.00015988	NaN	13.737	230	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27083			15187	393	8810	8992							0.0411933675062528
LPRPGGGG	8	Unmodified	_LPRPGGGG_					0	0	0		SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|6|1|sense	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|6|1|sense	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|6|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3943987598002	1	710.394399	709.387122	1.6208	0.0011514	-0.84615	-0.0006011	0.77465	0.00055031	710.3939699135898	16.539	0.11983	16.526	16.478	16.598	-0.012995	1473	46	0.7302302	0.027855158	0.7287108	149.08315	0	5.6868896						105	6	2	NaN	NaN	NaN	0.84887	1	3353	3353		0.32989	0	1	11013			15188	8877	8811	8993	12014	12014					0.020804216945293774
LPRWGLLCS	9	Unmodified	_LPRWGLLCS_					0	0	0		ENST00000334370.8_1_19:42880954-42881167:+|nuORF	ENST00000334370.8_1_19:42880954-42881167:+|nuORF	ENST00000334370.8_1_19:42880954-42881167:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7865870028	2	522.786587	1043.55862	1.3029	0.00068112	-10.934	-0.0057161	-9.631	-0.005035	522.7809307308054	15.196	0.1441	15.184	15.088	15.232	-0.012202	1296	43	0.8394264	0.0258255	0.83790696	340.66254	0	10.480713						178	7	3	NaN	NaN	NaN	0.18779	1	10155	10155		26.115	0.43357	1	22596			15189	6516	8812	8994	12015	12015					0.03858410670682133
LPSADAPSL	9	Unmodified	_LPSADAPSL_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;ENST00000573702.1_1_16:67984989-67985786:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	870.4567242451	1	870.456724	869.449448	1.7354	0.0015106	-0.36757	-0.00031995	1.3678	0.0011906	870.4565026375278	22.115	0.16887	22.115	22.091	22.26	0	423	55	1.3679651	0.032189846	1.3679651	278.30667	0	6.548889						162	8	2	NaN	NaN	NaN	0.023828	1	5655	5655		67.154	11.661	1	16223			15190	2393	8813	8995	12016	12016					0.009501032521825437
LPSADAPSL	9	Unmodified						0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;ENST00000573702.1_1_16:67984989-67985786:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	870.456724	869.449448	0.9454	0.00082293	0.35291	0.00030719	1.2983	0.0011301	870.4574974229213	22.139	0.14472	22.125	22.077	22.222	-0.013731	423	55	1.3679651	0.03218651	1.3664457	278.30667		6.5481873	0.0050076	0.00034363	-0.00075972	NaN	67.154	136	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16279			15191	2393	8813	8995							0.009501032521825437
LPSAFYIKL	9	Unmodified	_LPSAFYIKL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.3129605413001	2	526.312961	1050.61137	1.9292	0.0010154	-0.89715	-0.00047218	1.0321	0.00054319	526.3125875276432	28.05	0.31368	28.05	27.929	28.243	0	1239	70	0.87444305	0.04236108	0.87444305	354.8422	0	17.189789						564	14	4	NaN	NaN	NaN	0.00065562	1	10665	10665		115.07	45.288	1	173840			15192	2861	8814	8996	12017	12017					0.08808692005140983
LPSAFYIKL	9	Unmodified	_LPSAFYIKL_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.3129605413001	2	526.312961	1050.61137	1.1966	0.00062978	-0.53524	-0.0002817	0.66134	0.00034807	526.3127393187417	28.073	0.28964	28.064	27.943	28.233	-0.0089779	1239	79	0.87444305	0.047883928	0.8729236	354.8422	0	19.430878						572	13	5	NaN	NaN	NaN	0.0042638	1	10444	10444		104.2	56.717	1	180560			15193	2861	8814	8996	12018	12018					0.08808692005140983
LPSAGEEIL	9	Unmodified	_LPSAGEEIL_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4985890598001	1	928.498589	927.491313	1.9235	0.001786	0.22816	0.00021184	2.1517	0.0019978	928.4981611364667	24.912	0.096544	24.912	24.888	24.985	0	339	43	1.4179583	0.024959445	1.4179583	288.19632	0	5.072937						80	5	2	NaN	NaN	NaN	0.27608	1	6542	6542		20.449	7.4458	1	5715			15194	974	8815	8997	12019	12019					0.024666589407161155
LPSALALSL	9	Unmodified	_LPSALALSL_					0	0	0		ENST00000563753.1_1_15:73884305-73925556:-|nuORF;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.5451453219001	1	884.545145	883.537869	1.3677	0.0012097	-0.24195	-0.00021402	1.1257	0.00099573	884.5455525068401	31.017	0.072409	31.012	30.988	31.06	-0.0050716	360	100	1.405474	0.058823586	1.4039545	285.8667	0	11.9644165						163	4	3	NaN	NaN	NaN	0.0072287	1	5730	5730		98.041	0	1	15516			15195	3925	8816	8998	12020	12020					0.09144143562662066
LPSASVFVL	9	Unmodified	_LPSASVFVL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5451453219001	1	932.545145	931.537869	1.3542	0.0012629	-1.3416	-0.0012511	0.012683	1.1827E-05	932.5448377577297	31.79	0.096512	31.79	31.79	31.887	0	309	112	1.435777	0.06588364	1.435777	291.79938	0	13.389832						159	5	2	NaN	NaN	NaN	0.043119	1	6643	6643		49.833	20.937	1	68650			15196	2440	8817	8999	12021	12021					0.06936143562666075
LPSASVFVL	9	Unmodified	_LPSASVFVL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5451453219001	1	932.545145	931.537869	0.73607	0.00068642	-1.922	-0.0017924	-1.1859	-0.0011059	932.543790381956	31.789	0.1207	31.785	31.761	31.881	-0.0044174	312	64	1.433996	0.03741324	1.4324765	291.4374	0	7.6036377						138	6	2	NaN	NaN	NaN	0.094712	1	6502	6502		36.586	5.0254	1	73839			15197	2440	8817	8999	12022	12022					0.06936143562666075
LPSAVHHII	9	Unmodified	_LPSAVHHII_					0	0	0			REV__ENSG00000283787|ENST00000640310|PRR33	REV__ENSG00000283787|ENST00000640310|PRR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5781767848001	1	986.578177	985.5709	1.4659	0.0014462	8.4108	0.0082979	9.8767	0.0097441	986.5867380427043	36.83	0.26447	36.832	36.783	37.048	0.0016747	207	76	1.496219	0.04436493	1.4946996	303.8403	0	9.009277						247	12	2	NaN	NaN	NaN	0.14301	1	7909	7909		29.598	4.6373	1	28602	+		15198	11441	8818	9000	12023	12023					0.07753770405372507
LPSAVHHII	9	Unmodified						0	0	0			REV__ENSG00000283787|ENST00000640310|PRR33	REV__ENSG00000283787|ENST00000640310|PRR33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	986.578177	985.5709	1.7008	0.001678	8.4157	0.0083027	10.117	0.0099807	986.5847718465719	36.856	0.12024	36.856	36.856	36.976	0	207	67	1.496219	0.03904736	1.496219	303.8403		7.929413	0.01225	2.6318E-06	0.00075972	NaN	29.598	160	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15904	+		15199	11441	8818	9000							0.07753770405372507
LPSAVHHII	9	Unmodified						0	0	0			REV__ENSG00000283787|ENST00000640310|PRR33	REV__ENSG00000283787|ENST00000640310|PRR33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	986.578177	985.5709	1.4659	0.0014462	8.4108	0.0082979	9.8767	0.0097441	986.5867380427043	36.83	0.26447	36.832	36.783	37.048	0.0016747	207	76	1.496219	0.04436493	1.4946996	303.8403		9.009277	-0.01225	-2.2022E-06	-0.00075972	NaN	29.598	247	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28602	+		15200	11441	8818	9000							0.07753770405372507
LPSAWLVAL	9	Unmodified	_LPSAWLVAL_					0	0	0			REV__ENST00000315150.9_1_3:128807140-128807500:-|nuORF	REV__ENST00000315150.9_1_3:128807140-128807500:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.29202813395005	2	485.292028	968.569503	1.9252	0.00093428	-5.5941	-0.0027148	-3.669	-0.0017805	485.2895281369167	21.778	0.072226	21.764	21.715	21.788	-0.013895	1320	61	0.824661	0.03690952	0.8231416	335.00748	0	14.993988						95	4	2	NaN	NaN	NaN	0.61413	1	7427	7427		4.9097	0.18066	1	5902	+		15201	11701	8819	9001	12024	12024					0.08396136316616776
LPSCTGKG	8	Unmodified	_LPSCTGKG_					0	0	0			REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.3814508120001	1	762.381451	761.374174	1.7734	0.001352	0.76215	0.00058105	2.5355	0.001933	762.3818552897785	29.836	0.16893	29.836	29.811	29.98	0	567	55	1.2819146	0.03235507	1.2819146	261.3758	0	6.597046						185	8	2	NaN	NaN	NaN	0.65075	1	4227	4227		22.126	1.5709	1	25262	+		15202	11470	8820	9002	12025	12025					-0.016057774798809987
LPSCTGKG	8	Unmodified						0	0	0			REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	762.381451	761.374174	1.7734	0.001352	0.76215	0.00058105	2.5355	0.001933	762.3818552897785	29.836	0.16893	29.836	29.811	29.98	0	567	55	1.2819146	0.03235507	1.2819146	261.3758		6.597046	0.0039745	-4.2585E-05	-0.00013889	NaN	22.126	185	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25262	+		15203	11470	8820	9002							-0.016057774798809987
LPSCTGKG	8	Unmodified						0	0	0			REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	REV__ENST00000222402.7_1_7:43995369-43995687:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	762.381451	761.374174	1.255	0.0009568	0.87394	0.00066628	2.129	0.0016231	762.3824633916925	29.835	0.19301	29.828	29.803	29.996	-0.0070667	564	52	1.2837118	0.030552626	1.2821923	261.74222		6.2295227	-0.0039745	4.2643E-05	0.00013889	NaN	22.126	219	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26468	+		15204	11470	8820	9002							-0.016057774798809987
LPSDATVVL	9	Unmodified	_LPSDATVVL_					0	0	0		ENST00000472564.1_1_13:113960786-113974926:+|nuORF;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENST00000472564.1_1_13:113960786-113974926:+|nuORF;ENSG00000185896|ENST00000332556|LAMP1	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5193245019001	1	914.519325	913.512048	2.2663	0.0020726	-1.3569	-0.0012409	0.90942	0.00083168	914.5179519366744	25.829	0.14483	25.817	25.769	25.914	-0.011602	333	76	1.4215236	0.04457748	1.4200041	288.98563	0	9.062286						246	7	3	NaN	NaN	NaN	0.062072	1	6180	6180		41.785	0	1	35811			15205	7163;5442	8821	9003	12026	12026					0.05183249320384675
LPSDMAVAL	9	Unmodified	_LPSDMAVAL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4808305056	1	916.480831	915.473554	1.4062	0.0012887	-0.59194	-0.0005425	0.81421	0.00074621	916.4807189884184	27.277	0.16893	27.267	27.218	27.387	-0.010126	336	124	1.419741	0.073145986	1.4182216	288.61404	0	14.869598						513	8	5	NaN	NaN	NaN	0.094712	1	6214	6214		36.586	5.7954	1	119820			15206	7990	8822	9004	12027	12027					0.0124362041420909
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.3031241365	2	507.303124	1012.5917	2.2789	0.0011561	-1.9805	-0.0010047	0.29843	0.00015139	507.3023331861432	22.983	0.16847	22.983	22.911	23.079	0	1299	73	0.8375814	0.044262707	0.8375814	340.04907	0	17.970184						340	8	4	NaN	NaN	NaN	0.057383	1	9096	9096		43.776	10.35	1	102190			15207	3659	8823	9005	12028	12028					0.08590315994376851
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-2|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-2|SERPING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.3031241365	2	507.303124	1012.5917	1.5345	0.00077845	-1.0761	-0.00054592	0.45837	0.00023253	507.30275431725784	23.007	0.24095	22.993	22.896	23.137	-0.01354	1296	67	0.8394264	0.040582895	0.83790696	340.79813	0	16.476196						371	11	4	NaN	NaN	NaN	0.077759	1	8918	8918		39.039	2.4526	1	104920			15208	3659	8823	9005	12029	12029					0.08590315994376851
LPSDVVSAL	9	Unmodified	_LPSDVVSAL_					0	0	0		DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744377002	1	900.503674	899.496398	1.4381	0.001295	-1.458	-0.0013129	-0.01987	-1.7893E-05	900.502560736962	26.601	0.0965	26.59	26.566	26.663	-0.010645	381	94	1.3929803	0.05529964	1.3914609	283.24847	0	11.244629						145	5	2	NaN	NaN	NaN	0.056143	1	5942	5942		44.302	12.741	1	13472			15209	252	8824	9006	12030	12030					0.04262962803340997
LPSEDPYQL	9	Unmodified	_LPSEDPYQL_					0	0	0		ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5149674054999	1	1061.51497	1060.50769	2.0613	0.0021881	-0.30702	-0.00032591	1.7543	0.0018622	1061.5145688085515	24.14	0.36201	24.14	24.068	24.43	0	168	121	1.5192716	0.0709275	1.5192716	308.22086	0	14.389343						857	16	5	NaN	NaN	NaN	2.212E-07	1	11114	11114		133.34	31.296	1	279400			15210	1626	8825	9007	12031	12031					-0.020142598931897737
LPSEDPYQL	9	Unmodified	_LPSEDPYQL_					0	0	0		ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5149674054999	1	1061.51497	1060.50769	1.9163	0.0020342	-0.43109	-0.0004576	1.4852	0.0015766	1061.5142873522198	24.164	0.33784	24.151	24.055	24.393	-0.012749	168	118	1.5192716	0.069143176	1.5177522	308.22086	0	14.027374						838	15	5	NaN	NaN	NaN	2.4698E-12	1	10870	10870		151.71	45.156	1	257660			15211	1626	8825	9007	12032	12032					-0.020142598931897737
LPSEEDPAL	9	Unmodified	_LPSEEDPAL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.4727682397998	1	970.472768	969.465492	2.0069	0.0019476	0.047841	4.6428E-05	2.0547	0.001994	970.472925949246	21.657	0.16866	21.657	21.585	21.754	0	324	97	1.42687	0.05702579	1.42687	289.82385	0	11.583008						356	8	4	NaN	NaN	NaN	0.094712	1	7580	7580		36.586	11.625	1	54233			15212	1963	8826	9008	12033	12033					-0.020462353015886947
LPSEEDPAL	9	Unmodified	_LPSEEDPAL_					0	0	0		ENSG00000114541|ENST00000398540|FRMD4B;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000114541|ENST00000398540|FRMD4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4727682397998	1	970.472768	969.465492	1.4673	0.001424	0.30596	0.00029693	1.7733	0.0017209	970.4736687404596	21.633	0.072168	21.619	21.571	21.643	-0.013895	324	94	1.42687	0.05524671	1.4253505	289.82385	0	11.221649						140	4	2	NaN	NaN	NaN	0.028349	1	7435	7435		61.271	32.605	1	41386			15213	1963	8826	9008	12034	12034					-0.020462353015886947
LPSEEMVM	8	Unmodified	_LPSEEMVM_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	935.4212667162001	1	935.421267	934.41399	1.5747	0.001473	1.0365	0.00096958	2.6112	0.0024426	935.4221560941994	23.947	0.096493	23.947	23.899	23.995	0	288	67	1.4482387	0.03916776	1.4482387	294.31885	0	7.9599						110	5	2	NaN	NaN	NaN	0.78264	1	6709	6709		11.548	3.2582	1	9035.3			15214	5380	8827	9009	12035	12035					-0.05584018591480344
LPSEEMVM	8	Unmodified	_LPSEEMVM_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.4212667162001	1	935.421267	934.41399	2.2745	0.0021276	-0.548	-0.00051262	1.7265	0.001615	935.4209875191892	23.947	0.072388	23.934	23.91	23.982	-0.013048	288	43	1.4482387	0.024917006	1.4467193	294.31885	0	5.063751						64	4	2	NaN	NaN	NaN	0.30832	1	6568	6568		50.033	27.906	1	4470.6			15215	5380	8827	9009	12036	12036					-0.05584018591480344
LPSEEMVM	8	Oxidation (M)	_LPSEEMVM(Oxidation (M))_		LPSEEM(0.002)VM(0.998)		LPSEEM(-27)VM(27)	0	0	1		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.4161813383001	1	951.416181	950.408905	1.8907	0.0017988	0.35347	0.0003363	2.2441	0.0021351	951.4159122610345	19.756	0.096085	19.756	19.708	19.804	0	357	55	1.407258	0.032104254	1.407258	285.9206	0	6.5227966						104	5	2	NaN	NaN	NaN	0.14214	1	7090	7090		55.947	36.829	2	7602.1			15216	5380	8827	9010	12037	12037		560			-0.06828322454089175
LPSEGQPAL	9	Unmodified	_LPSEGQPAL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;ENST00000472305.1_1_9:139358117-139360423:-|nuORF	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.4832733466	1	911.483273	910.475997	1.6005	0.0014589	0.50703	0.00046215	2.1076	0.001921	911.4840590168857	20.525	0.21647	20.525	20.429	20.646	0	384	55	1.3911947	0.032141924	1.3911947	282.83398	0	6.534546						279	10	3	NaN	NaN	NaN	0.060816	1	6232	6232		42.318	2.1638	1	29791			15217	7955	8828	9011	12038	12038					0.017177921435177268
LPSEGQPAL	9	Unmodified	_LPSEGQPAL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;ENST00000472305.1_1_9:139358117-139360423:-|nuORF	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	911.4832733466	1	911.483273	910.475997	1.5534	0.0014159	-0.3374	-0.00030754	1.216	0.0011083	911.4829207802	20.525	0.24077	20.511	20.415	20.656	-0.014141	384	52	1.3911947	0.030354619	1.3896753	282.83398	0	6.171173						225	11	2	NaN	NaN	NaN	0.084037	1	6112	6112		38.131	10.342	1	26611			15218	7955	8828	9011	12039	12039					0.017177921435177268
LPSEVEPEL	9	Unmodified	_LPSEVEPEL_					0	0	0		ENST00000580485.1_1_17:30665207-30669158:-|nuORF;ENSG00000108666|ENST00000577809|C17orf75	ENST00000580485.1_1_17:30665207-30669158:-|nuORF	ENST00000580485.1_1_17:30665207-30669158:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5197184324	1	1012.51972	1011.51244	1.4896	0.0015082	-0.6398	-0.00064781	0.84977	0.00086041	1012.5197937575043	24.406	0.096489	24.406	24.381	24.478	0	270	100	1.458913	0.058711052	1.458913	296.1597	0	11.9183655						173	5	3	NaN	NaN	NaN	0.089764	1	9042	9042		37.302	7.704	1	19250			15219	1689	8829	9012	12040	12040					0.007146242495764454
LPSEVEPEL	9	Unmodified	_LPSEVEPEL_					0	0	0		ENST00000580485.1_1_17:30665207-30669158:-|nuORF;ENSG00000108666|ENST00000577809|C17orf75	ENST00000580485.1_1_17:30665207-30669158:-|nuORF	ENST00000580485.1_1_17:30665207-30669158:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5197184324	1	1012.51972	1011.51244	1.6239	0.0016442	-0.90976	-0.00092115	0.71415	0.00072309	1012.5183281120703	24.429	0.072418	24.417	24.393	24.465	-0.012749	270	88	1.458913	0.051605582	1.4573935	296.1597	0	10.475952						152	4	3	NaN	NaN	NaN	0.18779	1	8868	8868		26.115	6.9966	1	15606			15220	1689	8829	9012	12041	12041					0.007146242495764454
LPSFDAHLTEL	11	Unmodified	_LPSFDAHLTEL_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.82187799565	2	621.821878	1241.6292	1.3035	0.00081054	-4.3878	-0.0027284	-3.0843	-0.0019179	621.8187527414593	26.915	0.21717	26.915	26.843	27.06	0	1152	97	0.92775106	0.05869901	0.92775106	375.72397	0	23.772125						458	10	4	NaN	NaN	NaN	0.01289	1	17572	17572		66.481	37.586	1	103370			15221	4634	8830	9013	12042	12042					0.018053624693038728
LPSFDAHLTEL	11	Unmodified	_LPSFDAHLTEL_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.82187799565	2	621.821878	1241.6292	0.80018	0.00049757	-4.9826	-0.0030983	-4.1824	-0.0026007	621.8190257066551	26.939	0.21723	26.928	26.856	27.073	-0.010645	1152	91	0.92775106	0.055036247	0.9262317	375.72397	0	22.288788						444	10	4	NaN	NaN	NaN	0.21983	1	16828	16828		28.495	3.9333	1	96294			15222	4634	8830	9013	12043	12043					0.018053624693038728
LPSFSVEVM	9	Oxidation (M)	_LPSFSVEVM(Oxidation (M))_		LPSFSVEVM(1)		LPSFSVEVM(71)	0	0	1		ENST00000568762.1_1_16:56419791-56435681:-|nuORF;ENSG00000159461|ENST00000290649|AMFR	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5019598782	1	1024.50196	1023.49468	2.3219	0.0023788	-3.3823	-0.0034652	-1.0604	-0.0010863	1024.4996572173518	26.577	0.16895	26.577	26.529	26.698	0	210	112	1.4944444	0.06567395	1.4944444	303.32486	0	13.329712						303	8	3	NaN	NaN	NaN	0.021105	1	9496	9496		70.6	31.682	1	41688			15223	4029	8831	9014	12044	12044		434			-0.016124142769172067
LPSFSVEVM	9	Oxidation (M)	_LPSFSVEVM(Oxidation (M))_		LPSFSVEVM(1)		LPSFSVEVM(87)	0	0	1		ENST00000568762.1_1_16:56419791-56435681:-|nuORF;ENSG00000159461|ENST00000290649|AMFR	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5019598782	1	1024.50196	1023.49468	1.4175	0.0014522	-3.4034	-0.0034868	-1.9859	-0.0020346	1024.4976985641854	26.577	0.0965	26.566	26.518	26.614	-0.010645	210	115	1.4944444	0.06743109	1.4929249	303.32486	0	13.686371						294	5	3	NaN	NaN	NaN	0.011942	1	9305	9305		87.021	37.188	1	42408			15224	4029	8831	9014	12045	12045		434			-0.016124142769172067
LPSFSVEVM	9	Unmodified	_LPSFSVEVM_					0	0	0		ENST00000568762.1_1_16:56419791-56435681:-|nuORF;ENSG00000159461|ENST00000290649|AMFR	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	ENST00000568762.1_1_16:56419791-56435681:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5070452561001	1	1008.50705	1007.49977	1.2424	0.001253	1.9195	0.0019359	3.162	0.0031889	1008.5104122326559	30.076	0.19306	30.07	30.045	30.238	-0.0064087	219	76	1.4891195	0.044378996	1.4876001	302.30783	0	9.00943						310	9	4	NaN	NaN	NaN	0.074859	1	8712	8712		39.459	7.8977	1	41486			15225	4029	8831	9015	12046	12046					-0.0036811041430837577
LPSGAPHA	8	Unmodified	_LPSGAPHA_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3940644088	1	749.394064	748.386788	1.0239	0.00076731	-3.7827	-0.0028347	-2.7588	-0.0020674	749.3912484162336	31.863	0.16893	31.863	31.79	31.959	0	546	58	1.294491	0.03412521	1.294491	264.02115	0	6.960083						181	8	2	NaN	NaN	NaN	0.66957	1	4025	4025		20.952	0	1	23761	+		15226	11208	8832	9016	12047	12047					0.0025300197465867313
LPSGAPHA	8	Unmodified						0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.394064	748.386788	1.0239	0.00076731	-3.7827	-0.0028347	-2.7588	-0.0020674	749.3912484162336	31.863	0.16893	31.863	31.79	31.959	0	546	58	1.294491	0.03412521	1.294491	264.02115		6.960083	0.014798	0.00067303	-0.00013822	NaN	20.952	181	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23761	+		15227	11208	8832	9016							0.0025300197465867313
LPSGEDYNL	9	Unmodified	_LPSGEDYNL_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.4680172129	1	1007.46802	1006.46074	1.9559	0.0019705	-0.3629	-0.00036561	1.593	0.0016049	1007.4682583416596	22.043	0.19287	22.043	21.97	22.163	0	234	124	1.4802408	0.07291317	1.4802408	300.50955	0	14.802399						503	9	4	NaN	NaN	NaN	0.01966	1	8831	8831		72.428	35.126	1	61167			15228	4402	8833	9017	12048	12048					-0.042231194443274944
LPSGEDYNL	9	Unmodified	_LPSGEDYNL_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4680172129	1	1007.46802	1006.46074	1.4644	0.0014753	-0.027905	-2.8113E-05	1.4365	0.0014472	1007.4684186155894	22.042	0.19268	22.029	21.956	22.149	-0.013731	234	127	1.4802408	0.07468748	1.4787214	300.50955	0	15.162628						513	9	4	NaN	NaN	NaN	0.0028258	1	8665	8665		108.53	58.698	1	57497			15229	4402	8833	9017	12049	12049					-0.042231194443274944
LPSGGRPP	8	Unmodified	_LPSGGRPP_					0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.4362635745	1	780.436264	779.428987	1.4174	0.0011062	-10.438	-0.0081462	-9.0206	-0.00704	780.4281317212751	32.732	0.096508	32.732	32.707	32.804	0	588	46	1.2693287	0.026972651	1.2693287	258.70352	0	5.497345						82	5	2	NaN	NaN	NaN	0.80071	1	4479	4479		9.1232	0	1	6704.1	+		15230	10563	8834	9018	12050	12050					0.030449773830355298
LPSGGRPP	8	Unmodified						0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	780.436264	779.428987	1.4174	0.0011062	-10.438	-0.0081462	-9.0206	-0.00704	780.4281317212751	32.732	0.096508	32.732	32.707	32.804	0	588	46	1.2693287	0.026972651	1.2693287	258.70352		5.497345	-0.0099761	-0.00025743	-0.00013956	NaN	9.1232	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6704.1	+		15231	10563	8834	9018							0.030449773830355298
LPSGGRPP	8	Unmodified						0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	780.436264	779.428987	1.493	0.0011652	-9.3059	-0.0072626	-7.8128	-0.0060974	780.4284256104604	32.755	0.096535	32.752	32.703	32.8	-0.0031013	585	43	1.2711272	0.02517581	1.2696078	259.07007		5.1311035	0.0099761	0.00062615	0.00013956	NaN	9.1232	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6274.3	+		15232	10563	8834	9018							0.030449773830355298
LPSGLDSVL	9	Unmodified	_LPSGLDSVL_					0	0	0		POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant;POLQ|p.R2045Hfs*25|1|0.17|ENSG00000051341|chr3:121481634-121481650|GACTCCACAGATGCTCT/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ;ENST00000488282.1_1_3:121240615-121252034:-|nuORF	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	POLQ|p.I1964Tfs*31|1|0.13|ENSG00000051341|chr3:121483461-121483467|ATAGATG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744377002	1	900.503674	899.496398	1.4847	0.001337	0.52356	0.00047147	2.0083	0.0018085	900.5038863938507	28.339	0.096508	28.33	28.281	28.378	-0.0089779	363	61	1.4036897	0.035675287	1.4021703	285.42612	0	7.2542114						90	5	2	NaN	NaN	NaN	0.23112	1	5947	5947		23.334	0	1	8627.1			15233	574	8835	9019	12051	12051					0.04262962803340997
LPSGLPVSL	9	Unmodified	_LPSGLPVSL_					0	0	0		ENSG00000139329|ENST00000266718|LUM;CON__Q05443	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.5294952577	1	882.529495	881.522219	1.6335	0.0014416	-0.17285	-0.00015255	1.4606	0.0012891	882.5295213270923	29.401	0.16899	29.401	29.353	29.522	0	378	76	1.3947657	0.04463911	1.3947657	283.6986	0	9.079712						314	8	3	NaN	NaN	NaN	0.042816	1	5826	5826		49.961	15.523	1	58755		+	15234	3215	8836	9020	12052	12052					0.07671857045602337
LPSGLPVSL	9	Unmodified	_LPSGLPVSL_					0	0	0		ENSG00000139329|ENST00000266718|LUM;CON__Q05443	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.5294952577	1	882.529495	881.522219	1.2592	0.0011112	-0.30187	-0.00026641	0.95728	0.00084483	882.5295905568472	29.4	0.19302	29.393	29.344	29.537	-0.0077209	378	73	1.3947657	0.0428468	1.3932463	283.6986	0	8.715149						328	9	3	NaN	NaN	NaN	0.026295	1	5706	5706		63.958	11.334	1	61285		+	15235	3215	8836	9020	12053	12053					0.07671857045602337
LPSIFTLVI	9	Unmodified	_LPSIFTLVI_					0	0	0		ENSG00000212128|ENST00000390677|TAS2R13	ENSG00000212128|ENST00000390677|TAS2R13	ENSG00000212128|ENST00000390677|TAS2R13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.6233956429002	1	1002.6234	1001.61612	1.529	0.001533	-0.19756	-0.00019807	1.3314	0.0013349	1002.6230745701621	38.54	0.67279	38.54	38.299	38.972	0	180	175	1.5121819	0.102888465	1.5121819	307.0141	0	20.88916						2643	29	4	NaN	NaN	NaN	0.02781	1	8673	8673		61.977	6.0293	1	1089600			15236	5949	8837	9021	12054	12054					0.11537576147907203
LPSIFTLVI	9	Unmodified	_LPSIFTLVI_					0	0	0		ENSG00000212128|ENST00000390677|TAS2R13	ENSG00000212128|ENST00000390677|TAS2R13	ENSG00000212128|ENST00000390677|TAS2R13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.6233956429002	1	1002.6234	1001.61612	2.4797	0.0024862	-0.77504	-0.00077707	1.7046	0.0017091	1002.622598475517	38.489	0.64894	38.493	38.301	38.95	0.0040283	177	172	1.5139546	0.10110915	1.5124352	307.374	0	20.527924						2578	28	4	NaN	NaN	NaN	0.030391	1	8499	8499		58.599	2.6518	1	1122400			15237	5949	8837	9021	12055	12055					0.11537576147907203
LPSILNYNW	9	Unmodified	_LPSILNYNW_					0	0	0			REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2952991044	2	560.295299	1118.57605	0.85016	0.00047634	-6.1128	-0.003425	-5.2626	-0.0029486	560.292879877031	33.6	0.16883	33.6	33.552	33.721	0	1227	61	0.88180584	0.03680587	0.88180584	357.54855	0	14.923798						209	8	4	NaN	NaN	NaN	0.49672	1	13619	13619		9.746	0.78402	1	15258	+		15238	13598	8838	9022	12056	12056					0.021500294773204587
LPSILNYNW	9	Unmodified						0	0	0			REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.295299	1118.57605	0.85016	0.00047634	-6.1128	-0.003425	-5.2626	-0.0029486	560.292879877031	33.6	0.16883	33.6	33.552	33.721	0	1227	61	0.88180584	0.03680587	0.88180584	357.54855		14.923798	0.0015304	-0.00027153	-0.0010804	NaN	9.746	209	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15258	+		15239	13598	8838	9022							0.021500294773204587
LPSILNYNW	9	Unmodified						0	0	0			REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	REV__tr|U7T3S2|U7T3S2_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.295299	1118.57605	0.64338	0.00036048	-5.6214	-0.0031497	-4.9781	-0.0027892	560.2923267937113	33.599	0.096539	33.597	33.549	33.645	-0.0018501	1221	52	0.885486	0.03127992	0.88396657	359.04077		12.683197	-0.0015304	0.00027909	0.0010804	NaN	9.746	144	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10963	+		15240	13598	8838	9022							0.021500294773204587
LPSLACLF	8	Unmodified	_LPSLACLF_					0	0	0			REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.2384070022	2	432.238407	862.462261	1.2769	0.00055192	5.0058	0.0021637	6.2827	0.0027156	432.24059764816656	24.985	0.096521	24.985	24.96	25.057	0	1386	34	0.78399014	0.020358562	0.78399014	319.0333	0	8.284607						87	5	2	NaN	NaN	NaN	0.59262	1	5563	5563		25.752	0	1	8335.9	+		15241	9828	8839	9023	12057	12057					0.025528431107318283
LPSLACLF	8	Unmodified						0	0	0			REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	432.238407	862.462261	1.2769	0.00055192	5.0058	0.0021637	6.2827	0.0027156	432.24059764816656	24.985	0.096521	24.985	24.96	25.057	0	1386	34	0.78399014	0.020358562	0.78399014	319.0333		8.284607	-0.0059627	-0.00084608	0.0016852	NaN	25.752	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8335.9	+		15242	9828	8839	9023							0.025528431107318283
LPSLACLF	8	Unmodified						0	0	0			REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	REV__SLC16A3|p.E363Rfs*38|1|0.26|ENSG00000141526|chr17:82237856-82237856|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.238407	862.462261	1.3655	0.00059023	6.8413	0.0029571	8.2068	0.0035473	432.24130576608064	25.008	0.16888	24.996	24.948	25.117	-0.012011	1389	34	0.7821392	0.020362973	0.78061974	318.28006		8.286407	0.0059627	0.00074069	-0.0016852	NaN	25.752	85	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7322.2	+		15243	9828	8839	9023							0.025528431107318283
LPSLDLVF	8	Unmodified	_LPSLDLVF_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.5185962204001	1	903.518596	902.51132	1.1479	0.0010372	-1.1164	-0.0010087	0.031569	2.8523E-05	903.5164971542398	34.975	0.096401	34.975	34.951	35.048	0	309	76	1.435777	0.044534802	1.435777	291.93604	0	9.055237						178	5	3	NaN	NaN	NaN	0.19946	1	6129	6129		50.033	13.996	1	18160			15244	3181	8840	9024	12058	12058					0.056164546713375785
LPSLDLVF	8	Unmodified	_LPSLDLVF_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.5185962204001	1	903.518596	902.51132	1.5755	0.0014235	-0.62783	-0.00056726	0.9477	0.00085626	903.5177171985614	34.974	0.12063	34.974	34.926	35.046	-4.5776E-05	306	67	1.4375578	0.039188623	1.4360384	292.29813	0	7.9682007						176	6	3	NaN	NaN	NaN	0.19946	1	6004	6004		50.033	5.7857	1	17927			15245	3181	8840	9024	12059	12059					0.056164546713375785
LPSLEFISL	9	Unmodified	_LPSLEFISL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5819247587002	1	1018.58192	1017.57465	1.5848	0.0016143	0.53165	0.00054152	2.1165	0.0021558	1018.5824773882406	35.217	0.14478	35.217	35.168	35.313	0	150	91	1.5299006	0.053150415	1.5299006	310.54532	0	10.788696						283	7	2	NaN	NaN	NaN	0.014046	1	9285	9285		80.639	22.039	1	79269			15246	3538	8841	9025	12060	12060					0.06656395388586134
LPSLNSESL	9	Unmodified	_LPSLNSESL_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.25583959290003	2	480.25584	958.497126	1.9549	0.00093886	-1.9049	-0.00091485	0.049998	2.4012E-05	480.2548275168143	16.854	0.21579	16.854	16.806	17.021	0	1305	52	0.83389086	0.03137821	0.83389086	338.8068	0	12.74884						316	10	5	NaN	NaN	NaN	0.077759	1	7293	7293		39.039	1.8082	1	69726			15247	5096	8842	9026	12061	12061					0.01621757452392103
LPSLSAHEL	9	Unmodified	_LPSLSAHEL_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.76637448945	2	483.766374	965.518196	1.8977	0.00091804	-0.71986	-0.00034824	1.1778	0.00056979	483.76544505238627	21.464	0.14447	21.45	21.354	21.499	-0.014006	1305	40	0.83389086	0.023992479	0.8323714	338.77197	0	9.74704						96	7	2	NaN	NaN	NaN	0.47587	1	7356	7356		10.605	0	1	14437			15248	2501;7938	8843	9027	12062	12062					0.03405767551907957
LPSMPEPAL	9	Unmodified	_LPSMPEPAL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.4964805697999	1	954.496481	953.489204	1.3008	0.0012416	-0.2274	-0.00021705	1.0734	0.0010246	954.4965128382786	27.036	0.09654	27.036	26.988	27.084	0	336	82	1.419741	0.048107862	1.419741	288.44354	0	9.773926						204	5	3	NaN	NaN	NaN	0.036546	1	7165	7165		52.624	23.026	1	21826			15249	5157	8844	9028	12063	12063					0.01059906931243404
LPSMPEPAL	9	Unmodified	_LPSMPEPAL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.4964805697999	1	954.496481	953.489204	1.2502	0.0011933	-0.43403	-0.00041428	0.8162	0.00077906	954.4962925775845	27.06	0.12069	27.049	26.977	27.098	-0.010126	333	88	1.4215236	0.05166042	1.4200041	288.8057	0	10.4956665						230	6	3	NaN	NaN	NaN	0.030391	1	7024	7024		58.599	27.038	1	21842			15250	5157	8844	9028	12064	12064					0.01059906931243404
LPSNVLPSL	9	Unmodified	_LPSNVLPSL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1;ENST00000497242.1_1_X:153631168-153631932:-|nuORF	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.5509589813001	1	939.550959	938.543683	1.449	0.0013614	0.49071	0.00046105	1.9398	0.0018225	939.5512405043066	28.556	0.072409	28.556	28.532	28.605	0	297	46	1.4428991	0.026703835	1.4428991	293.21494	0	5.4265747						81	4	2	NaN	NaN	NaN	0.028404	1	6795	6795		61.199	13.717	1	8446.3			15251	431	8845	9029	12065	12065					0.07195242074340058
LPSNVLPSL	9	Unmodified	_LPSNVLPSL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1;ENST00000497242.1_1_X:153631168-153631932:-|nuORF	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.5509589813001	1	939.550959	938.543683	1.7045	0.0016015	-2.1535	-0.0020233	-0.44896	-0.00042182	939.5494472982513	28.556	0.072393	28.547	28.523	28.596	-0.0083504	297	52	1.4428991	0.030261159	1.4413797	293.21497	0	6.1494446						97	4	2	NaN	NaN	NaN	0.27507	1	6655	6655		20.513	5.0506	1	8644.4			15252	431	8845	9029	12066	12066					0.07195242074340058
LPSPAIDHEQL	11	Unmodified	_LPSPAIDHEQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3195024822	2	610.319502	1218.62445	1.0142	0.000619	-1.4482	-0.00088384	-0.43394	-0.00026484	610.3190679846241	20.838	0.19271	20.838	20.766	20.959	0	1176	73	0.9130621	0.044066966	0.9130621	369.8519	0	17.850098						314	9	4	NaN	NaN	NaN	6.269E-05	1	16956	16956		88.524	58.817	1	61999			15253	2542	8846	9030	12067	12067					0.02388478326565746
LPSPAIDHEQL	11	Unmodified	_LPSPAIDHEQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3195024822	2	610.319502	1218.62445	0.53107	0.00032413	-1.8644	-0.0011379	-1.3333	-0.00081376	610.3183992180473	20.863	0.1686	20.849	20.752	20.921	-0.014088	1176	73	0.9130621	0.044076502	0.91154265	369.8519	0	17.853973						294	8	4	NaN	NaN	NaN	0.055983	1	16274	16274		48.319	23.926	1	59663			15254	2542	8846	9030	12068	12068					0.02388478326565746
LPSPGEKAL	9	Unmodified	_LPSPGEKAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.26346765975	2	456.263468	910.512382	1.4401	0.00065707	-1.7583	-0.00080223	-0.31816	-0.00014516	456.26261732345864	17.093	0.26407	17.093	16.997	17.261	0	1374	49	0.791392	0.029601216	0.791392	321.77917	0	12.035828						367	12	4	NaN	NaN	NaN	0.12104	1	6235	6235		32.778	4.9892	1	92493			15255	2723	8847	9031	12069	12069					0.053546690402299646
LPSPGEKAL	9	Unmodified	_LPSPGEKAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.26346765975	2	456.263468	910.512382	1.5853	0.0007233	-1.194	-0.00054478	0.39128	0.00017852	456.26265220129824	17.114	0.23993	17.1	16.98	17.22	-0.013569	1374	49	0.791392	0.029601216	0.7898726	321.77917	0	12.035858						343	11	4	NaN	NaN	NaN	0.022082	1	6115	6115		69.363	13.95	1	92318			15256	2723	8847	9031	12070	12070					0.053546690402299646
LPSPRHSKV	9	Unmodified	_LPSPRHSKV_					0	0	0		ENST00000295500.8_1_2:175347818-175351661:-|nuORF	ENST00000295500.8_1_2:175347818-175351661:-|nuORF	ENST00000295500.8_1_2:175347818-175351661:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5948894815001	1	1020.59489	1019.58761	1.4023	0.0014312	1.3992	0.001428	2.8015	0.0028592	1020.5960149657783	35.215	0.19315	35.215	35.143	35.336	-4.5776E-05	93	148	1.5635144	0.08671594	1.5619949	317.36002	0	17.60147						416	9	2	NaN	NaN	NaN	0.29681	1	9170	9170		19.118	1.338	1	81931			15257	6394	8848	9032	12071	12071					0.07860271291326626
LPSPVDAAF	9	Unmodified	_LPSPVDAAF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11;ENST00000492464.1_1_22:24123155-24123763:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4774596871999	1	916.47746	915.470183	1.6528	0.0015148	-1.1825	-0.0010838	0.47032	0.00043103	916.475949235852	26.77	0.16943	26.77	26.722	26.891	0	372	118	1.3983358	0.06962979	1.3983358	284.2627	0	14.154785						359	8	4	NaN	NaN	NaN	0.0072287	1	6331	6331		98.041	44.717	1	62833			15258	1174	8849	9033	12072	12072					0.009066936318390617
LPSPVDAAF	9	Unmodified	_LPSPVDAAF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11;ENST00000492464.1_1_22:24123155-24123763:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4774596871999	1	916.47746	915.470183	1.3123	0.0012027	-0.022242	-2.0385E-05	1.2901	0.0011823	916.477129052727	26.77	0.14481	26.759	26.711	26.856	-0.010645	369	106	1.4001206	0.062481523	1.3986012	284.62552	0	12.70166						370	7	4	NaN	NaN	NaN	0.0094682	1	6213	6213		93.472	43.51	1	63571			15259	1174	8849	9033	12073	12073					0.009066936318390617
LPSQEVQAL	9	Unmodified	_LPSQEVQAL_					0	0	0		ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF;ENSG00000173992|ENST00000533244|CCS	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5360371986	1	984.536037	983.528761	2.0028	0.0019718	-1.2705	-0.0012508	0.73231	0.00072098	984.535052951497	21.705	0.096361	21.705	21.657	21.754	0	234	55	1.4802408	0.03197491	1.4802408	300.60422	0	6.493408						105	5	2	NaN	NaN	NaN	0.12866	1	8012	8012		31.675	8.5579	1	10901			15260	4922	8850	9034	12074	12074					0.036337502063247484
LPSQEVQAL	9	Unmodified						0	0	0		ENST00000526058.1_1_11:66360677-66366729:+|nuORF;ENST00000530384.5_1_11:66360639-66366729:+|nuORF;ENSG00000173992|ENST00000533244|CCS	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	ENST00000526058.1_1_11:66360677-66366729:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	984.536037	983.528761	1.8346	0.0018062	-1.0005	-0.00098499	0.83412	0.00082123	984.534468646313	21.681	0.096338	21.667	21.643	21.74	-0.013895	228	61	1.4837929	0.0355314	1.4822735	301.32556		7.2156677	-0.019056	0.00016413	0.0010163	NaN	31.675	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10666			15261	4922	8850	9034							0.036337502063247484
LPSQPHLL	8	Unmodified	_LPSQPHLL_					0	0	0			REV__HDAC9|p.P420L|1|0.11|ENSG00000048052|chr7:18648484-18648484|C/T|missense_variant	REV__HDAC9|p.P420L|1|0.11|ENSG00000048052|chr7:18648484-18648484|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.76617752420003	2	452.766178	903.517802	1.1787	0.00053369	-3.1529	-0.0014275	-1.9742	-0.00089386	452.764920956495	21.32	0.16833	21.306	21.21	21.378	-0.014006	1365	55	0.7969414	0.033279717	0.79542196	324.0728	0	13.533081						136	8	2	NaN	NaN	NaN	0.73961	1	6027	6027		16.584	0	1	9588.4	+		15262	13008	8851	9035	12075	12075					0.06218392622713509
LPSRAEWLL	9	Unmodified	_LPSRAEWLL_					0	0	0		nc|ENSG00000149313|Q9NRN7-2|AASDHPPT;ENSG00000149313|ENST00000278618|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.8111163441	2	542.811116	1083.60768	2.1341	0.0011584	-6.7537	-0.003666	-4.6196	-0.0025076	542.8071869531498	25.95	0.24137	25.95	25.901	26.143	0	1269	103	0.8560222	0.06260389	0.8560222	347.23032	0	25.394135						445	11	3	NaN	NaN	NaN	0.27507	1	12137	12137		20.513	2.5436	1	74678			15263	3673	8852	9036	12076	12076					0.06922022231265146
LPSSDTLDL	9	Unmodified	_LPSSDTLDL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.488418304	1	960.488418	959.481142	1.9692	0.0018914	-0.81547	-0.00078325	1.1537	0.0011081	960.4877576479099	25.274	0.28956	25.274	25.202	25.491	0	273	106	1.4571344	0.062289238	1.4571344	296.01428	0	12.653931						621	13	3	NaN	NaN	NaN	0.019103	1	7321	7321		73.133	35.831	1	205210			15264	6084	8853	9037	12077	12077					-0.00021948784524283838
LPSSFVEKL	9	Unmodified	_LPSSFVEKL_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.29222509920004	2	510.292225	1018.5699	2.4381	0.0012441	-1.9376	-0.00098874	0.5005	0.0002554	510.2913752457708	23.128	0.21685	23.128	23.031	23.248	0	1272	52	0.854179	0.0313375	0.854179	346.76022	0	12.72168						343	10	4	NaN	NaN	NaN	0.0068607	1	9331	9331		98.792	48.477	1	100760			15265	3944	8854	9038	12078	12078					0.061355112458159056
LPSSFVEKL	9	Unmodified	_LPSSFVEKL_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.29222509920004	2	510.292225	1018.5699	1.6227	0.00082805	-1.6118	-0.0008225	0.010863	5.5432E-06	510.29155330307873	23.175	0.21702	23.162	23.065	23.283	-0.013294	1272	52	0.854179	0.0313375	0.8526596	346.76022	0	12.72168						354	10	5	NaN	NaN	NaN	0.011167	1	9139	9139		89.374	39.412	1	107270			15266	3944	8854	9038	12079	12079					0.061355112458159056
LPSSHLLTPP	10	Unmodified	_LPSSHLLTPP_					0	0	0		ENST00000468303.5_1_1:24742482-24742845:-|nuORF	ENST00000468303.5_1_1:24742482-24742845:-|nuORF	ENST00000468303.5_1_1:24742482-24742845:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3031241365001	2	531.303124	1060.5917	0.64471	0.00034253	-10.042	-0.0053355	-9.3975	-0.0049929	531.2972528508453	27.277	0.14479	27.267	27.218	27.363	-0.010126	1269	46	0.8560222	0.027641773	0.85450274	347.32492	0	11.215454						97	7	3	NaN	NaN	NaN	0.40641	1	10891	10891		23.334	0	1	19582			15267	7130	8855	9039	12080	12080					0.06382315994369492
LPSSHLLTPP	10	Unmodified						0	0	0		ENST00000468303.5_1_1:24742482-24742845:-|nuORF	ENST00000468303.5_1_1:24742482-24742845:-|nuORF	ENST00000468303.5_1_1:24742482-24742845:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.303124	1060.5917	1.4844	0.00078868	-12.697	-0.0067459	-11.212	-0.0059572	531.2962332473052	27.253	0.072346	27.253	27.205	27.277	0	1269	43	0.8560222	0.025803149	0.8560222	347.32492		10.469421	-0.0066285	-0.00091637	0.00075972	NaN	23.334	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18688			15268	7130	8855	9039							0.06382315994369492
LPSSLFLLL	9	Unmodified	_LPSSLFLLL_					0	0	0		nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.6233956429002	1	1002.6234	1001.61612	1.041	0.0010437	0.36317	0.00036413	1.4041	0.0014078	1002.6242403997467	40.392	0.1683	40.392	40.32	40.488	0	171	55	1.5174994	0.031900406	1.5174994	308.09372	0	6.4766235						166	8	2	NaN	NaN	NaN	0.056143	1	8674	8674		44.302	0	1	13326			15269	3701	8856	9040	12081	12081					0.11537576147907203
LPSSPDKQL	9	Unmodified	_LPSSPDKQL_					0	0	0			REV__ENSG00000109832|ENST00000263576|DDX25	REV__ENSG00000109832|ENST00000263576|DDX25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5360371986	1	984.536037	983.528761	1.6967	0.0016704	-8.061	-0.0079363	-6.3643	-0.0062659	984.5288219386545	27.181	0.14474	27.181	27.133	27.277	0	240	76	1.4766881	0.04443562	1.4766881	299.88278	0	9.023865						207	7	2	NaN	NaN	NaN	0.12328	1	8007	8007		32.453	2.8544	1	21807	+		15270	9065	8857	9041	12082	12082					0.036337502063247484
LPSSVLLSL	9	Unmodified	_LPSSVLLSL_					0	0	0			REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.5713600724001	1	928.57136	927.564084	1.286	0.0011942	-0.086531	-8.035E-05	1.1995	0.0011138	928.5709884926569	31.38	0.19306	31.38	31.332	31.525	0	309	109	1.435777	0.06408596	1.435777	291.81757	0	13.025269						406	9	3	NaN	NaN	NaN	0.011942	1	6545	6545		87.021	0	1	89643	+		15271	12481	8858	9042	12083	12083					0.09740412734140591
LPSSVLLSL	9	Unmodified	_LPSSVLLSL_					0	0	0			REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.5713600724001	1	928.57136	927.564084	0.68596	0.00063696	0.78311	0.00072718	1.4691	0.0013641	928.5720852450006	31.379	0.19302	31.374	31.326	31.519	-0.0050716	303	118	1.4393384	0.069437504	1.437819	292.54144	0	14.112976						418	9	4	NaN	NaN	NaN	0.025843	1	6420	6420		64.55	0	1	92119	+		15272	12481	8858	9042	12084	12084					0.09740412734140591
LPSSVLLSL	9	Unmodified						0	0	0			REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	928.57136	927.564084	1.286	0.0011942	-0.086531	-8.035E-05	1.1995	0.0011138	928.5709884926569	31.38	0.19306	31.38	31.332	31.525	0	309	109	1.435777	0.06408596	1.435777	291.81757		13.025269	0.0030618	-0.00032129	-0.001021	NaN	87.021	406	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89643	+		15273	12481	8858	9042							0.09740412734140591
LPSSVLLSL	9	Unmodified						0	0	0			REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	928.57136	927.564084	0.68596	0.00063696	0.78311	0.00072718	1.4691	0.0013641	928.5720852450006	31.379	0.19302	31.374	31.326	31.519	-0.0050716	303	118	1.4393384	0.069437504	1.437819	292.54144		14.112976	-0.0030618	0.00048624	0.001021	NaN	87.021	418	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92119	+		15274	12481	8858	9042							0.09740412734140591
LPSSYELDVL	10	Unmodified	_LPSSYELDVL_					0	0	0		ENSG00000180628|ENST00000336126|PCGF5	ENSG00000180628|ENST00000336126|PCGF5	ENSG00000180628|ENST00000336126|PCGF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1135.5881323485999	1	1135.58813	1134.58086	2.128	0.0024165	-2.4952	-0.0028335	-0.36725	-0.00041705	1135.5852292194086	29.57	0.072393	29.57	29.522	29.594	0	66	55	1.579413	0.031785727	1.579413	320.1532	0	6.4430847						111	4	2	NaN	NaN	NaN	0.5358	1	14270	14270		17.97	4.5066	1	11056			15275	5200	8859	9043	12085	12085					0.01894868829413099
LPSTATESL	9	Unmodified	_LPSTATESL_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4778536176999	1	918.477854	917.470577	2.2223	0.0020412	-2.5314	-0.0023251	-0.3091	-0.0002839	918.4747061941056	20.333	0.048096	20.319	20.295	20.343	-0.014141	357	37	1.407258	0.02140963	1.4057386	286.0672	0	4.352173						53	3	2	NaN	NaN	NaN	0.14301	1	6235	6235		29.598	3.4834	1	3057			15276	7983	8860	9044	12086	12086					0.008540685610341825
LPSTEAVAL	9	Unmodified	_LPSTEAVAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744376999	1	900.503674	899.496398	1.7381	0.0015652	-1.4873	-0.0013394	0.25076	0.00022581	900.5025761162896	23.971	0.12062	23.958	23.91	24.03	-0.01305	366	64	1.4019053	0.03748095	1.4003859	285.06326	0	7.6213684						189	6	3	NaN	NaN	NaN	0.025843	1	5943	5943		64.55	22.765	1	19533			15277	1220	8861	9045	12087	12087					0.0426296280331826
LPSTEAVAL	9	Unmodified						0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.503674	899.496398	1.6852	0.0015175	0.039013	3.5132E-05	1.7242	0.0015526	900.5035507104869	23.971	0.12063	23.971	23.923	24.044	0	369	64	1.4001206	0.037477016	1.4001206	284.70038		7.6205444	0.006627	0.00063543	-0.00013259	NaN	64.55	205	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22362			15278	1220	8861	9045							0.0426296280331826
LPSTSTGA	8	Unmodified	_LPSTSTGA_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3726602647001	1	733.37266	732.365384	1.2781	0.00093733	6.2877	0.0046112	7.5658	0.0055486	733.377189872166	24.092	0.16895	24.092	24.044	24.213	0	615	49	1.2531329	0.02880621	1.2531329	255.68639	0	5.877548						148	8	2	NaN	NaN	NaN	0.62311	1	3791	3791		23.85	0	1	20369			15279	3505	8862	9046	12088	12088					-0.011504278446977878
LPSTSTGA	8	Unmodified						0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	733.37266	732.365384	1.4992	0.0010994	6.3597	0.004664	7.8588	0.0057635	733.3775603509	24.092	0.16887	24.079	24.031	24.199	-0.012749	612	52	1.2549332	0.030604959	1.2534138	256.0537		6.2445526	-0.0064666	2.4805E-05	0.00014043	NaN	23.85	160	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17874			15280	3505	8862	9046							-0.011504278446977878
LPSTSVDSL	9	Unmodified	_LPSTSVDSL_					0	0	0		SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7	SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4778536177001	1	918.477854	917.470577	1.9156	0.0017595	-0.82143	-0.00075446	1.0942	0.001005	918.4784090188099	22.308	0.024151	22.308	22.284	22.308	0	345	34	1.4143922	0.019616127	1.4143922	287.51746	0	3.9875793						40	2	2	NaN	NaN	NaN	0.10956	1	6367	6367		34.439	8.3238	1	3020			15281	3161	8863	9047	12089	12089					0.008540685610569199
LPSTSVDSL	9	Unmodified	_LPSTSVDSL_					0	0	0		SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant;nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7	SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4778536177001	1	918.477854	917.470577	2.0434	0.0018768	0.42927	0.00039427	2.4727	0.0022711	918.478529991193	22.308	0.024128	22.294	22.27	22.294	-0.013731	348	37	1.412609	0.02140057	1.4110895	287.15494	0	4.3503113						39	2	2	NaN	NaN	NaN	0.062072	1	6238	6238		41.785	7.3457	1	2881.3			15282	3161	8863	9047	12090	12090					0.008540685610569199
LPSVEAQL	8	Unmodified	_LPSVEAQL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4774596871999	1	856.47746	855.470183	1.9272	0.0016506	-1.6373	-0.0014023	0.28985	0.00024825	856.4773482432842	23.899	0.048197	23.899	23.875	23.923	0	411	46	1.3751161	0.026812077	1.3751161	279.8327	0	5.4561768						50	3	2	NaN	NaN	NaN	0.3434	1	5474	5474		39.459	2.8723	1	3748.6			15283	7990	8864	9048	12091	12091					0.03666693631839735
LPSVEAQL	8	Unmodified						0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	856.47746	855.470183	1.9385	0.0016603	-1.3276	-0.0011371	0.61091	0.00052323	856.4771279349275	23.923	0.048166	23.91	23.886	23.934	-0.013048	408	43	1.3769034	0.025023222	1.375384	280.1964		5.092163	0.0054121	9.0313E-05	0.00013392	NaN	39.459	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4143.5			15284	7990	8864	9048							0.03666693631839735
LPSVLIDEL	9	Unmodified	_LPSVLIDEL_					0	0	0		ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;ENSG00000146263|ENST00000683635|MMS22L	ENST00000511335.5_1_6:97715738-97720957:-|nuORF	ENST00000511335.5_1_6:97715738-97720957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5768393807999	1	998.576839	997.569563	1.5402	0.001538	-0.21599	-0.00021568	1.3242	0.0013224	998.5765215782654	32.008	0.12066	32.008	31.959	32.08	0	174	73	1.5157272	0.042542934	1.5157272	307.75082	0	8.637817						249	6	3	NaN	NaN	NaN	0.0094682	1	8496	8496		93.472	12.833	1	56457			15285	3558	8865	9049	12092	12092					0.07068091525934506
LPSVLIDEL	9	Unmodified	_LPSVLIDEL_					0	0	0		ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000508820.1_1_6:97720576-97730353:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;ENSG00000146263|ENST00000683635|MMS22L	ENST00000511335.5_1_6:97715738-97720957:-|nuORF	ENST00000511335.5_1_6:97715738-97720957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5768393807999	1	998.576839	997.569563	0.97126	0.00096988	-0.084151	-8.4031E-05	0.88711	0.00088585	998.5761271140806	31.982	0.12065	31.979	31.954	32.075	-0.0037594	174	73	1.5157272	0.042538404	1.5142077	307.75082	0	8.636902						283	6	4	NaN	NaN	NaN	0.0040938	1	8315	8315		104.71	6.6698	1	57530			15286	3558	8865	9049	12093	12093					0.07068091525934506
LPSWVLDDL	9	Unmodified	_LPSWVLDDL_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2;IRAK2-SRGAP3|2|fusion;IRAK2-SRGAP3|1|fusion	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5564382896998	1	1057.55644	1056.54916	1.2692	0.0013423	-2.369	-0.0025054	-1.0998	-0.0011631	1057.5531563620082	33.817	0.14475	33.817	33.745	33.89	0	132	103	1.5405227	0.060135126	1.5405227	312.5472	0	12.200439						224	7	2	NaN	NaN	NaN	0.0094682	1	10945	10945		93.472	56.169	1	33994			15287	2848	8866	9050	12094	12094					0.023149208661379816
LPTAISDWL	9	Unmodified	_LPTAISDWL_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.5458736034001	1	1015.54587	1014.5386	1.4806	0.0015037	1.3606	0.0013817	2.8412	0.0028854	1015.5459110709542	33.311	0.19308	33.311	33.238	33.431	0	195	106	1.5033154	0.06203842	1.5033154	305.1612	0	12.593323						264	9	2	NaN	NaN	NaN	0.0094682	1	9158	9158		93.472	43.639	1	48076			15288	365	8867	9051	12095	12095					0.03190938211707817
LPTAISDWL	9	Unmodified	_LPTAISDWL_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.5458736034001	1	1015.54587	1014.5386	1.1519	0.0011698	1.4764	0.0014994	2.6283	0.0026692	1015.5455056038062	33.334	0.26542	33.331	33.235	33.5	-0.0024757	192	94	1.5050892	0.054954052	1.5035697	305.5212	0	11.155243						291	12	2	NaN	NaN	NaN	0.0040938	1	8984	8984		104.71	65.793	1	49161			15289	365	8867	9051	12096	12096					0.03190938211707817
LPTATRDCIV	10	Unmodified	_LPTATRDCIV_					0	0	0			REV__ENSG00000145990|ENST00000379287|GFOD1	REV__ENSG00000145990|ENST00000379287|GFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7920663112	2	544.792066	1087.56958	1.6797	0.0009151	1.8568	0.0010116	3.5365	0.0019267	544.7930324217582	19.444	0.21596	19.444	19.348	19.564	0	1254	100	0.8652351	0.060779035	0.8652351	350.95126	0	24.652802						293	10	2	NaN	NaN	NaN	0.60686	1	12289	12289		14.425	1.3239	1	67102	+		15290	9936	8868	9052	12097	12097					0.029297682542846815
LPTAVIANL	9	Unmodified	_LPTAVIANL_					0	0	0		ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENSG00000011132|ENST00000316757|APBA3	ENST00000588984.5_1_19:3751026-3754498:-|nuORF	ENST00000588984.5_1_19:3751026-3754498:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.5560443592	1	911.556044	910.548768	1.8028	0.0016434	0.22655	0.00020651	2.0294	0.0018499	911.5553676213091	28.581	0.072399	28.581	28.556	28.629	0	360	58	1.405474	0.03388965	1.405474	285.73663	0	6.889862						114	4	2	NaN	NaN	NaN	0.2961	1	6237	6237		19.164	0.045272	1	12052			15291	400	8869	9053	12098	12098					0.08991545936930834
LPTAVIANL	9	Unmodified	_LPTAVIANL_					0	0	0		ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENSG00000011132|ENST00000316757|APBA3	ENST00000588984.5_1_19:3751026-3754498:-|nuORF	ENST00000588984.5_1_19:3751026-3754498:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	911.5560443592	1	911.556044	910.548768	1.5786	0.001439	1.0278	0.00093689	2.6064	0.0023758	911.558231284705	28.58	0.072386	28.572	28.547	28.62	-0.0083485	357	70	1.407258	0.041011214	1.4057386	286.09933	0	8.3377075						99	4	2	NaN	NaN	NaN	0.060816	1	6117	6117		42.318	2.8588	1	9479			15292	400	8869	9053	12099	12099					0.08991545936930834
LPTDSAIIM	9	Oxidation (M)	_LPTDSAIIM(Oxidation (M))_		LPTDSAIIM(1)		LPTDSAIIM(50)	0	0	1		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5019598782002	1	976.50196	975.494683	1.8713	0.0018273	-0.29891	-0.00029189	1.5724	0.0015354	976.5009860022069	22.766	0.096415	22.752	22.704	22.8	-0.01354	267	46	1.4606913	0.026675463	1.4591719	296.6679	0	5.417816						85	5	2	NaN	NaN	NaN	0.043119	1	7607	7607		49.833	27.707	1	7069.1			15293	3576	8870	9054	12100	12100		401			0.005955857230787842
LPTDSATVL	9	Unmodified	_LPTDSATVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4985890597999	1	916.498589	915.491313	2.6479	0.0024268	0.84133	0.00077108	3.4893	0.0031979	916.4996703707603	23.417	0.28925	23.417	23.345	23.634	0	315	226	1.4322147	0.13391805	1.4322147	291.1497	0	27.223724						1430	13	5	NaN	NaN	NaN	0.014046	1	6339	6339		80.639	30.806	1	1111400			15294	5661	8871	9055	12101	12101					0.030186589406980602
LPTDSATVL	9	Unmodified	_LPTDSATVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4985890597999	1	916.498589	915.491313	2.8196	0.0025841	0.44588	0.00040865	3.2654	0.0029928	916.4995474366004	23.441	0.40999	23.427	23.331	23.741	-0.013294	312	217	1.433996	0.12852716	1.4324765	291.5118	0	26.127808						1375	18	5	NaN	NaN	NaN	0.04947	1	6217	6217		47.136	2.8334	1	1087100			15295	5661	8871	9055	12102	12102					0.030186589406980602
LPTDWLIYDEM	11	Oxidation (M)	_LPTDWLIYDEM(Oxidation (M))_		LPTDWLIYDEM(1)		LPTDWLIYDEM(64)	0	0	1		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3261358835499	2	706.326136	1410.63772	0.54683	0.00038624	-1.6848	-0.00119	-1.1379	-0.00080376	706.3253665406336	31.646	0.21725	31.646	31.525	31.742	0	1083	55	0.9699114	0.032947004	0.9699114	392.28024	0	13.325409						248	10	4	NaN	NaN	NaN	0.01747	1	20151	20151		63.731	41.959	1	29473			15296	544	8872	9056	12103	12103		52			-0.05117451676392193
LPTDWLIYDEM	11	Oxidation (M)	_LPTDWLIYDEM(Oxidation (M))_		LPTDWLIYDEM(1)		LPTDWLIYDEM(61)	0	0	1		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3261358835499	2	706.326136	1410.63772	0.25762	0.00018196	-1.5323	-0.0010823	-1.2747	-0.00090035	706.3243235205878	31.645	0.1448	31.64	31.568	31.712	-0.0044174	1080	58	0.9717421	0.03477931	0.97022265	393.02066	0	14.066467						207	7	3	NaN	NaN	NaN	0.022256	1	19199	19199		60.984	35.183	1	28398			15297	544	8872	9056	12104	12104		52			-0.05117451676392193
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2714896571	2	524.27149	1046.52843	1.847	0.00096831	-2.0807	-0.0010909	-0.23375	-0.00012255	524.2702017557133	27.712	0.38608	27.712	27.615	28.001	0	1296	97	0.8394264	0.058991432	0.8394264	340.6499	0	23.939453						1017	17	5	NaN	NaN	NaN	0.018156	1	10482	10482		74.332	24.371	1	463740			15298	5310	8873	9057	12105	12105					0.00702330486478786
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.5357028475999	1	1047.5357	1046.52843	2.3124	0.0024223	-0.81322	-0.00085188	1.4992	0.0015704	1047.5343845215964	27.688	0.33783	27.688	27.639	27.977	0	195	151	1.5033154	0.08867812	1.5033154	305.0361	0	17.99356						824	15	5	NaN	NaN	NaN	5.1574E-18	1	10485	10485		159.67	64.048	1	231780			15299	5310	8873	9057	12106	12106					0.00702330486478786
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2714896571	2	524.27149	1046.52843	1.4549	0.00076276	-1.0484	-0.00054963	0.40651	0.00021312	524.2709501254243	27.711	0.096506	27.702	27.653	27.75	-0.009552	1296	91	0.8394264	0.055304408	0.83790696	340.6499	0	22.443237						483	5	4	NaN	NaN	NaN	0.032826	1	10275	10275		55.413	5.5802	1	317840			15300	5310	8873	9057	12107	12107					0.00702330486478786
LPTEAEFQL	9	Unmodified	_LPTEAEFQL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5357028475999	1	1047.5357	1046.52843	1.6241	0.0017013	-0.67537	-0.00070748	0.94875	0.00099384	1047.5344978448945	27.711	0.36198	27.702	27.605	27.967	-0.009552	192	172	1.5050892	0.101119876	1.5035697	305.39597	0	20.518127						844	16	5	NaN	NaN	NaN	3.7692E-08	1	10276	10276		140.15	60.947	1	232690			15301	5310	8873	9057	12108	12108					0.00702330486478786
LPTEAEFQL	9	Unmodified						0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	524.27149	1046.52843	1.2394	0.00064976	-3.2125	-0.0016842	-1.9731	-0.0010345	524.2692589794175	27.808	0.26551	27.798	27.798	28.064	-0.009552	1257	91	0.86339295	0.055298448	0.8618735	350.37582		22.440826	0.043085	-0.00079754	0.011224	NaN	74.332	567	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150130			15302	5310	8873	9057							0.00702330486478786
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.26386159025	2	590.263862	1178.51317	1.7094	0.001009	-0.31272	-0.00018459	1.3967	0.0008244	590.2635466843227	28.75	0.24134	28.75	28.677	28.918	0	1224	94	0.883646	0.057002902	0.883646	358.07278	0	23.098846						604	11	4	NaN	NaN	NaN	0.025843	1	15773	15773		64.55	39.988	1	137670			15303	2593	8874	9058	12109	12109					-0.06894581101369113
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1179.5204467139	1	1179.52045	1178.51317	2.8299	0.0033379	-1.0164	-0.0011989	1.8135	0.0021391	1179.5192083264774	28.725	0.24134	28.725	28.677	28.918	0	66	109	1.579413	0.063611746	1.579413	320.0096	0	12.88858						687	11	4	NaN	NaN	NaN	0.0094682	1	15774	15774		93.472	62.862	1	132880			15304	2593	8874	9058	12110	12110					-0.06894581101369113
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.26386159025	2	590.263862	1178.51317	1.1037	0.00065148	0.12469	7.3602E-05	1.2284	0.00072509	590.2640046205564	28.749	0.21717	28.74	28.668	28.885	-0.0083504	1221	94	0.885486	0.057002902	0.88396657	358.8184	0	23.098846						581	10	5	NaN	NaN	NaN	0.094712	1	15196	15196		36.586	18.787	1	136650			15305	2593	8874	9058	12111	12111					-0.06894581101369113
LPTEEEWEF	9	Unmodified	_LPTEEEWEF_					0	0	0		nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	nc|ENSG00000129103|Q8NBJ7-2|SUMF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1179.5204467139	1	1179.52045	1178.51317	1.9352	0.0022826	-0.29073	-0.00034292	1.6445	0.0019397	1179.520099091884	28.749	0.2896	28.74	28.668	28.958	-0.0083504	66	106	1.579413	0.061848044	1.5778936	320.0096	0	12.5312195						702	13	4	NaN	NaN	NaN	0.026295	1	15197	15197		63.958	30.533	1	116260			15306	2593	8874	9058	12112	12112					-0.06894581101369113
LPTENELTF	9	Unmodified	_LPTENELTF_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.5306174696998	1	1063.53062	1062.52334	1.9359	0.0020589	-0.95511	-0.0010158	0.98076	0.0010431	1063.5296867520926	26.601	0.1207	26.601	26.553	26.674	0	162	85	1.5228153	0.04962802	1.5228153	308.93225	0	10.067993						246	6	3	NaN	NaN	NaN	0.01966	1	11226	11226		72.428	19.649	1	31639			15307	645	8875	9059	12113	12113					-0.005419733761527823
LPTENELTF	9	Unmodified	_LPTENELTF_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.26894696815	2	532.268947	1062.52334	0.68768	0.00036603	-0.70228	-0.0003738	-0.014591	-7.7663E-06	532.2681180720375	26.601	0.12065	26.59	26.542	26.663	-0.010645	1278	88	0.85049206	0.053492785	0.8489726	345.073	0	21.703796						261	6	4	NaN	NaN	NaN	0.048656	1	10973	10973		47.482	27.033	1	34732			15308	645	8875	9059	12114	12114					-0.005419733761527823
LPTENELTF	9	Unmodified	_LPTENELTF_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.5306174696998	1	1063.53062	1062.52334	1.1727	0.0012472	-0.32888	-0.00034978	0.84384	0.00089745	1063.5301092227933	26.601	0.0965	26.59	26.566	26.663	-0.010645	159	88	1.5245869	0.051403165	1.5230675	309.29166	0	10.428131						216	5	3	NaN	NaN	NaN	0.012018	1	10974	10974		86.792	31.299	1	29085			15309	645	8875	9059	12115	12115					-0.005419733761527823
LPTENVDKM	9	Unmodified	_LPTENVDKM_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.76297452075	2	523.762975	1045.5114	1.6185	0.00084773	-1.9872	-0.0010408	-0.36869	-0.00019311	523.7621930195833	17.165	0.14402	17.165	17.117	17.261	0	1335	52	0.8154261	0.031398535	0.8154261	330.91446	0	12.742096						178	7	4	NaN	NaN	NaN	0.044153	1	10440	10440		49.394	24.994	1	22294			15310	5776	8876	9060	12116	12116					-0.009539133909811426
LPTENVDKM	9	Unmodified						0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.762975	1045.5114	1.6137	0.00084519	-0.4524	-0.00023695	1.1613	0.00060823	523.7631935143047	17.162	0.14386	17.149	17.124	17.268	-0.013569	1335	43	0.8154261	0.025864601	0.81390667	330.91446		10.496338	-0.0084725	0.00084452	-0.00075972	NaN	49.394	178	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23369			15311	5776	8876	9060							-0.009539133909811426
LPTENVDKM	9	Oxidation (M)	_LPTENVDKM(Oxidation (M))_		LPTENVDKM(1)		LPTENVDKM(51)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7604318318	2	531.760432	1061.50631	1.8743	0.00099667	-4.0724	-0.0021656	-2.1982	-0.0011689	531.7596706939238	14.237	0.16817	14.237	14.189	14.357	0	1332	82	0.8172735	0.049841344	0.8172735	331.5992	0	20.222565						253	8	4	NaN	NaN	NaN	0.039271	1	11171	11171		51.467	22.972	1	33933			15312	5776	8876	9061	12117	12117		591			-0.02198217253612711
LPTENVDKM	9	Oxidation (M)	_LPTENVDKM(Oxidation (M))_		LPTENVDKM(1)		LPTENVDKM(89)	0	0	1		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7604318318	2	531.760432	1061.50631	0.82787	0.00044023	-2.9489	-0.0015681	-2.1211	-0.0011279	531.7593696090037	14.237	0.16766	14.225	14.201	14.369	-0.011218	1329	55	0.81912065	0.03324014	0.8176012	332.34866	0	13.486816						230	8	4	NaN	NaN	NaN	0.011349	1	10921	10921		88.822	35.682	1	34866			15313	5776	8876	9061	12118	12118		591			-0.02198217253612711
LPTEQEVRF	9	Unmodified	_LPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7956632451501	2	559.795663	1117.57677	1.3981	0.00078266	-2.3049	-0.0012903	-0.90683	-0.00050764	559.7943885553086	20.622	0.14453	20.622	20.573	20.718	0	1245	67	0.87076044	0.040499628	0.87076044	353.0738	0	16.421692						236	7	4	NaN	NaN	NaN	0.077759	1	13582	13582		39.039	15.922	1	51648			15314	1233	8877	9062	12119	12119					0.022688241263722375
LPTEQEVRF	9	Unmodified	_LPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7956632451501	2	559.795663	1117.57677	1.1558	0.00064703	-0.21173	-0.00011852	0.9441	0.00052851	559.7952134436148	20.622	0.14465	20.608	20.559	20.704	-0.014088	1245	61	0.87076044	0.036825776	0.869241	353.0738	0	14.932037						198	7	4	NaN	NaN	NaN	0.030696	1	13184	13184		58.2	13.561	1	49331			15315	1233	8877	9062	12120	12120					0.022688241263722375
LPTESIQKN	9	Unmodified	_LPTESIQKN_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5575009222	1	1029.5575	1028.55022	1.9368	0.0019941	-9.5561	-0.0098385	-7.6192	-0.0078444	1029.5480495051193	25.153	0.048243	25.141	25.117	25.165	-0.012011	168	46	1.5192716	0.026585102	1.5177522	308.34384	0	5.3955994						65	3	2	NaN	NaN	NaN	0.13602	1	9524	9524		30.61	1.7145	1	5653			15316	4200	8878	9063	12121	12121					0.03709135235044414
LPTESIQKN	9	Unmodified						0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1029.5575	1028.55022	1.9356	0.0019928	-12.552	-0.012923	-10.616	-0.01093	1029.5442283375178	25.153	0.048237	25.153	25.153	25.202	0	174	46	1.5157272	0.026585102	1.5157272	307.62448		5.395569	0.0061314	-0.0013538	-0.0010125	NaN	30.61	70	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4863.2			15317	4200	8878	9063							0.03709135235044414
LPTETYEDF	9	Unmodified	_LPTETYEDF_					0	0	0		ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7505870394999	2	557.750587	1113.48662	1.451	0.00080931	-1.2012	-0.00066998	0.2498	0.00013932	557.7508681274411	19.3	0.096003	19.3	19.252	19.348	0	1269	67	0.8560222	0.040530264	0.8560222	347.11328	0	16.434845						129	5	2	NaN	NaN	NaN	0.56671	1	13408	13408		6.8632	0.613	1	16819			15318	7100	8879	9064	12122	12122					-0.06558269992729038
LPTGSFPF	8	Unmodified	_LPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4454312773	1	865.445431	864.438155	2.0194	0.0017477	-0.028717	-2.4853E-05	1.9907	0.0017228	865.4452167210497	29.739	0.26548	29.739	29.642	29.908	0	423	112	1.3679651	0.06620681	1.3679651	278.3318	0	13.470734						561	12	3	NaN	NaN	NaN	0.09307	1	5583	5583		65.672	15.639	1	110820			15319	7920	8880	9065	12123	12123					0.0005132594870929097
LPTGSFPF	8	Unmodified	_LPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4454312773	1	865.445431	864.438155	1.1901	0.00103	0.14131	0.00012229	1.3314	0.0011523	865.4454954358446	29.762	0.31368	29.755	29.635	29.948	-0.0070667	426	100	1.3661768	0.059030533	1.3646574	277.96796	0	12.01059						641	14	3	NaN	NaN	NaN	0.057516	1	5447	5447		76.264	26.231	1	126750			15320	7920	8880	9065	12124	12124					0.0005132594870929097
LPTGTEATL	9	Unmodified	_LPTGTEATL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4829389956	1	902.482939	901.475663	1.6403	0.0014803	-0.51	-0.00046027	1.1303	0.00102	902.4826388063104	21.031	0.072138	21.031	20.983	21.055	0	411	40	1.3751161	0.02323699	1.3751161	279.6067	0	4.7248535						62	4	2	NaN	NaN	NaN	0.094712	1	6107	6107		36.586	6.9881	1	4200.7			15321	567	8881	9066	12125	12125					0.02098372423665751
LPTKEASSL	9	Unmodified	_LPTKEASSL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.26620731395	2	473.266207	944.517862	0.83105	0.00039331	-0.25985	-0.00012298	0.5712	0.00027033	473.26566093460144	15.532	0.16787	15.52	15.496	15.664	-0.012202	1344	58	0.8098828	0.035126686	0.8083634	329.12125	0	14.274872						175	8	3	NaN	NaN	NaN	0.052553	1	6795	6795		45.827	8.5242	1	28732			15322	435	8882	9067	12126	12126					0.04338347832049294
LPTKVEEIP	9	Unmodified	_LPTKVEEIP_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.29750744235	2	513.297507	1024.58046	1.2718	0.00065279	-2.1182	-0.0010873	-0.84646	-0.00043448	513.2964260901757	19.827	0.19246	19.813	19.717	19.909	-0.014141	1293	37	0.84127116	0.022136092	0.8397517	341.4935	0	8.985596						154	9	2	NaN	NaN	NaN	0.14787	1	9387	9387		28.896	5.778	1	18424			15323	4153	8883	9068	12127	12127					0.0691549390023738
LPTKVEEIP	9	Unmodified						0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.297507	1024.58046	2.0979	0.0010768	-2.6898	-0.0013807	-0.59192	-0.00030383	513.2962734118323	19.78	0.072079	19.78	19.732	19.804	0	1293	40	0.84127116	0.023979485	0.84127116	341.4935		9.733887	-0.01656	-0.00033173	0.00075972	NaN	28.896	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10522			15324	4153	8883	9068							0.0691549390023738
LPTLEAVAA	9	Unmodified	_LPTLEAVAA_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.5087598156	1	884.50876	883.501483	2.6342	0.00233	-0.75763	-0.00067013	1.8766	0.0016598	884.5082217604973	25.491	0.072395	25.479	25.455	25.527	-0.012011	387	46	1.389409	0.026789188	1.3878895	282.59933	0	5.4487915						53	4	2	NaN	NaN	NaN	0.10956	1	5728	5728		34.439	13.883	1	3733.3			15325	3441	8884	9069	12128	12128					0.055072666659384595
LPTLLGGRP	9	Unmodified	_LPTLLGGRP_					0	0	0			REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475002	1	923.567278	922.560001	1.8691	0.0017262	-3.8757	-0.0035795	-2.0067	-0.0018533	923.5639508441884	56.277	0.047962	56.277	56.253	56.301	0	300	55	1.4411188	0.03204298	1.4411188	292.92654	0	6.513153						68	3	2	NaN	NaN	NaN	0.66196	1	6454	6454		2.4615	0.28518	1	6194.2	+		15326	12839	8885	9070	12129	12129					0.09562368031095048
LPTLLGGRP	9	Unmodified						0	0	0			REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.567278	922.560001	1.8691	0.0017262	-3.8757	-0.0035795	-2.0067	-0.0018533	923.5639508441884	56.277	0.047962	56.277	56.253	56.301	0	300	55	1.4411188	0.03204298	1.4411188	292.92654		6.513153	0.0012729	-0.0018525	-0.00013041	NaN	2.4615	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6194.2	+		15327	12839	8885	9070							0.09562368031095048
LPTLLGGRP	9	Unmodified						0	0	0			REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	REV__ENST00000574343.5_1_17:79862711-79863545:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	923.567278	922.560001	-0.51605	-0.00047661	-0.41821	-0.00038625	-0.93426	-0.00086285	923.5669163727132	56.275	0.047966	56.274	56.25	56.298	-0.00056458	297	46	1.4428991	0.026698232	1.4413797	293.2884		5.426758	-0.0012729	0.0013408	0.00013041	NaN	2.4615	78	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8221.3	+		15328	12839	8885	9070							0.09562368031095048
LPTPGHSG	8	Unmodified	_LPTPGHSG_					0	0	0		ENST00000398898.6_1_3:49155182-49156625:-|nuORF;ENST00000306026.5_1_3:49155182-49156625:-|nuORF;ENST00000417901.5_1_3:49155182-49156664:-|nuORF	ENST00000398898.6_1_3:49155182-49156625:-|nuORF	ENST00000398898.6_1_3:49155182-49156625:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3889790309001	1	765.388979	764.381703	1.3197	0.0010101	-0.57043	-0.0004366	0.74923	0.00057345	765.3883780416057	28.894	0.16893	28.885	28.885	29.054	-0.0083485	531	58	1.3034686	0.03410697	1.3019491	265.752	0	6.953766						194	8	2	NaN	NaN	NaN	0.76633	1	4199	4199		13.737	0	1	29748			15329	6425	8886	9071	12130	12130					-0.009913018879501578
LPTPKTFVL	9	Unmodified	_LPTPKTFVL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.3129605413	2	508.312961	1014.61137	1.9485	0.00099045	-1.5669	-0.0007965	0.38155	0.00019395	508.31201761165465	25.298	0.19304	25.298	25.202	25.395	0	1269	46	0.8560222	0.027644694	0.8560222	347.52655	0	11.223145						161	9	2	NaN	NaN	NaN	0.31471	1	9172	9172		17.97	0	1	21775			15330	5364	8887	9072	12131	12131					0.10464692005132292
LPTPKTFVL	9	Unmodified						0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.312961	1014.61137	1.5492	0.00078748	-0.077262	-3.9273E-05	1.4719	0.0007482	508.31280642669174	25.322	0.16883	25.31	25.214	25.382	-0.012011	1269	46	0.8560222	0.027647734	0.85450274	347.52655		11.224365	0.0059139	0.00073504	-0.00075972	NaN	17.97	180	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19215			15331	5364	8887	9072							0.10464692005132292
LPTPPGLA	8	Unmodified	_LPTPPGLA_					0	0	0			REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4505166552001	1	765.450517	764.44324	0.97297	0.00074476	4.9886	0.0038185	5.9615	0.0045633	765.4539470545452	33.502	0.12068	33.501	33.428	33.549	-0.0018463	498	49	1.3232021	0.028686523	1.3216827	269.7749	0	5.848633						117	6	2	NaN	NaN	NaN	0.81807	1	4208	4208		6.794	0	1	8508.1	+		15332	12786	8888	9073	12132	12132					0.05159629811328159
LPTPPGLA	8	Unmodified						0	0	0			REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	765.450517	764.44324	0.89837	0.00068766	5.6445	0.0043206	6.5429	0.0050082	765.4549905800867	33.48	0.096516	33.48	33.456	33.552	0	501	52	1.3214091	0.030490756	1.3214091	269.40933		6.2164917	-0.010451	0.00020134	-0.00013678	NaN	6.794	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8984.9	+		15333	12786	8888	9073							0.05159629811328159
LPTPPGLA	8	Unmodified						0	0	0			REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	765.450517	764.44324	0.97297	0.00074476	4.9886	0.0038185	5.9615	0.0045633	765.4539470545452	33.502	0.12068	33.501	33.428	33.549	-0.0018463	498	49	1.3232021	0.028686523	1.3216827	269.7749		5.848633	0.010451	-0.00030073	0.00013678	NaN	6.794	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8508.1	+		15334	12786	8888	9073							0.05159629811328159
LPTVDPIAV	9	Unmodified	_LPTVDPIAV_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5400599440001	1	924.54006	923.532783	1.9197	0.0017749	-0.82962	-0.00076701	1.0901	0.0010079	924.5390170185425	27.929	0.024117	27.929	27.929	27.953	0	342	43	1.4161754	0.02496469	1.4161754	287.852	0	5.074341						52	2	2	NaN	NaN	NaN	0.04947	1	6484	6484		47.136	10.549	1	5397.8			15335	4274	8889	9074	12133	12133					0.06795839700043871
LPTVDPIAV	9	Unmodified						0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	924.54006	923.532783	1.18	0.001091	-3.1543	-0.0029163	-1.9743	-0.0018253	924.5386697986794	27.952	0.048246	27.943	27.919	27.967	-0.009552	342	40	1.4161754	0.02318275	1.4146559	287.852		4.7121277	0.0069062	-0.0012682	-0.00075972	NaN	47.136	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4924.6			15336	4274	8889	9074							0.06795839700043871
LPTVIIVNL	9	Unmodified	_LPTVIIVNL_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.6342946802002	1	981.634295	980.627018	1.1106	0.0010902	1.3578	0.0013328	2.4684	0.0024231	981.6365081844632	33.407	0.09655	33.407	33.383	33.48	0	192	55	1.5050892	0.03192401	1.5050892	305.66284	0	6.4833374						74	5	2	NaN	NaN	NaN	0.25448	1	7914	7914		21.835	2.7167	1	9386.6			15337	4711	8890	9075	12134	12134					0.13592978522194699
LPTVIIVNL	9	Unmodified	_LPTVIIVNL_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.6342946802002	1	981.634295	980.627018	1.1504	0.0011293	1.5136	0.0014858	2.664	0.0026151	981.6348878090741	33.406	0.096527	33.404	33.356	33.452	-0.0018501	195	58	1.5033154	0.03369224	1.501796	305.30264	0	6.8424377						90	5	2	NaN	NaN	NaN	0.074859	1	7743	7743		39.459	16.124	1	9585.9			15338	4711	8890	9075	12135	12135					0.13592978522194699
LPVAESPDM	9	Unmodified	_LPVAESPDM_					0	0	0		ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-3|EHF	ENSG00000135373|ENST00000257831|EHF	ENSG00000135373|ENST00000257831|EHF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4550096856001	1	958.45501	957.447733	1.9425	0.0018618	-2.0807	-0.0019943	-0.13829	-0.00013254	958.4509901118371	21.392	0.072136	21.378	21.354	21.426	-0.014006	318	58	1.4304334	0.03385365	1.428914	290.59875	0	6.877533						78	4	2	NaN	NaN	NaN	0.089764	1	7127	7127		37.302	13.968	1	5731.1			15339	2936	8891	9076	12136	12136					-0.03269273828072983
LPVALQTRL	9	Unmodified	_LPVALQTRL_					0	0	0		nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	nc|ENSG00000102103|O60828-10|PQBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.82148406514995	2	505.821484	1009.62842	1.393	0.00070463	-1.9483	-0.00098549	-0.55526	-0.00028086	505.8202280059052	23.031	0.072262	23.017	22.993	23.065	-0.013294	1257	73	0.86339295	0.044210076	0.8618735	350.54205	0	17.949524						189	4	3	NaN	NaN	NaN	0.17328	1	8804	8804		27.046	9.2661	1	39570			15340	1364	8892	9077	12137	12137					0.1239861261092301
LPVASSSTL	9	Unmodified	_LPVASSSTL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4880243735003	1	874.488024	873.480748	1.3134	0.0011486	0.7407	0.00064773	2.0541	0.0017963	874.4889802708427	21.2	0.072296	21.2	21.175	21.248	0	411	49	1.3751161	0.02860105	1.3751161	279.7414	0	5.818329						81	4	2	NaN	NaN	NaN	0.29681	1	5723	5723		19.118	8.5134	1	8107.4			15341	937	8893	9078	12138	12138					0.03894676286302001
LPVASSSTL	9	Unmodified	_LPVASSSTL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1;NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4880243735003	1	874.488024	873.480748	1.1777	0.0010298	-0.92287	-0.00080704	0.25479	0.00022281	874.486516115343	21.2	0.072292	21.186	21.162	21.234	-0.014004	411	43	1.3751161	0.025023222	1.3735967	279.74142	0	5.0904846						68	4	2	NaN	NaN	NaN	0.094712	1	5584	5584		36.586	11.625	1	6675.8			15342	937	8893	9078	12139	12139					0.03894676286302001
LPVATDFEF	9	Unmodified	_LPVATDFEF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.514239124	1	1038.51424	1037.50696	1.4367	0.0014921	0.29361	0.00030492	1.7303	0.001797	1038.5145098912576	30.825	0.21719	30.825	30.777	30.994	0	192	157	1.5050892	0.09229374	1.5050892	305.4305	0	18.72934						548	10	3	NaN	NaN	NaN	3.9321E-26	1	10100	10100		174.97	110.42	1	283030			15343	1880	8894	9079	12140	12140					-0.010290545422321884
LPVATDFEF	9	Unmodified	_LPVATDFEF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.514239124	1	1038.51424	1037.50696	1.5115	0.0015697	0.71112	0.00073851	2.2226	0.0023082	1038.514801887867	30.824	0.16895	30.818	30.77	30.939	-0.0057564	189	175	1.5068626	0.10295403	1.5053432	305.7904	0	20.89264						438	8	3	NaN	NaN	NaN	3.3858E-07	1	9892	9892		128.99	84.689	1	290410			15344	1880	8894	9079	12141	12141					-0.010290545422321884
LPVAVLVAL	9	Unmodified	_LPVAVLVAL_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.6022662703002	1	894.602266	893.59499	1.5911	0.0014234	-0.64573	-0.00057767	0.94534	0.0008457	894.6015033493052	34.806	0.16887	34.806	34.758	34.927	0	354	136	1.4090419	0.08023095	1.4090419	286.54294	0	16.315796						402	8	3	NaN	NaN	NaN	0.033463	1	5983	5983		54.579	0	1	77044			15345	5706	8895	9080	12142	12142					0.14393610839044868
LPVAVLVAL	9	Unmodified	_LPVAVLVAL_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.6022662703002	1	894.602266	893.59499	1.3759	0.0012309	-0.52599	-0.00047055	0.84996	0.00076038	894.601492341109	34.781	0.16869	34.78	34.732	34.901	-0.0006485	351	115	1.4108255	0.06772542	1.409306	286.90564	0	13.772644						431	8	4	NaN	NaN	NaN	0.055365	1	5869	5869		44.632	0	1	80389			15346	5706	8895	9080	12143	12143					0.14393610839044868
LPVDDAINGL	10	Unmodified	_LPVDDAINGL_					0	0	0		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5466018849	1	1026.5466	1025.53933	1.7021	0.0017473	-0.050907	-5.2258E-05	1.6512	0.0016951	1026.547696928675	26.94	0.096498	26.94	26.915	27.012	0	198	49	1.5015416	0.028383017	1.5015416	304.75726	0	5.760681						98	5	2	NaN	NaN	NaN	0.10581	1	9601	9601		45.165	20.603	1	12971			15347	2587	8896	9081	12144	12144					0.027577328607549134
LPVDDAINGL	10	Unmodified	_LPVDDAINGL_					0	0	0		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.5466018849	1	1026.5466	1025.53933	1.2894	0.0013236	-0.12779	-0.00013118	1.1616	0.0011924	1026.5450689789316	26.963	0.072407	26.952	26.928	27.001	-0.010645	198	49	1.5015416	0.028383017	1.5000222	304.75726	0	5.760681						112	4	3	NaN	NaN	NaN	0.0035208	1	9413	9413		80.901	45.604	1	11347			15348	2587	8896	9081	12145	12145					0.027577328607549134
LPVDDFNEL	9	Unmodified	_LPVDDFNEL_					0	0	0		ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5149674054999	1	1061.51497	1060.50769	1.1741	0.0012464	-0.40571	-0.00043067	0.76844	0.00081571	1061.5135927265958	27.928	0.072367	27.919	27.895	27.967	-0.009552	141	103	1.5352125	0.06023085	1.5336931	311.45483	0	12.219269						233	4	3	NaN	NaN	NaN	0.33202	1	10869	10869		16.858	2.8167	1	23860			15349	2375	8897	9082	12146	12146					-0.020142598931897737
LPVDDNFSL	9	Unmodified	_LPVDDNFSL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.25583959290003	2	510.25584	1018.49713	2.0333	0.0010375	-1.4091	-0.00071901	0.62418	0.00031849	510.2552460590483	28.098	0.26548	28.098	28.05	28.315	0	1287	49	0.8449601	0.029508412	0.8449601	343.0181	0	11.9791565						220	12	3	NaN	NaN	NaN	0.31737	1	9314	9314		17.799	5.2111	1	32806			15350	3260	8898	9083	12147	12147					-0.0113824254760857
LPVDDNFSL	9	Unmodified	_LPVDDNFSL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5044027192001	1	1019.5044	1018.49713	3.0019	0.0030605	-0.32007	-0.00032632	2.6819	0.0027342	1019.5041528834706	28.098	0.28959	28.098	28.026	28.315	0	210	145	1.4944444	0.08519423	1.4944444	303.34464	0	17.292847						767	13	4	NaN	NaN	NaN	0.0073225	1	9315	9315		97.85	55.532	1	203560			15351	3260	8898	9083	12148	12148					-0.0113824254760857
LPVDDNFSL	9	Unmodified	_LPVDDNFSL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.5044027192001	1	1019.5044	1018.49713	1.8185	0.001854	-0.36271	-0.00036978	1.4558	0.0014842	1019.5044712000808	28.121	0.26548	28.112	28.04	28.305	-0.0089779	207	148	1.496219	0.08697379	1.4946996	303.70483	0	17.654053						770	12	4	NaN	NaN	NaN	0.022082	1	9128	9128		69.363	29.904	1	206760			15352	3260	8898	9083	12149	12149					-0.0113824254760857
LPVDEFLPIMF	11	Unmodified	_LPVDEFLPIMF_					0	0	0		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.84904987385	2	660.84905	1319.68355	0.97958	0.00064735	-1.5127	-0.00099969	-0.53315	-0.00035233	660.8489741196945	42.41	0.11976	42.41	42.363	42.482	0	1119	43	0.9479278	0.02566415	0.9479278	383.6454	0	10.38681						109	6	3	NaN	NaN	NaN	0.32978	1	19110	19110		24.562	13.597	1	7834.5			15353	4529	8899	9084	12150	12150					0.036492382965434444
LPVDEFLPIMF	11	Unmodified	_LPVDEFLPIMF_					0	0	0		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.84904987385	2	660.84905	1319.68355	1.1547	0.00076306	-3.2917	-0.0021753	-2.1371	-0.0014123	660.8473149530224	42.361	0.071808	42.37	42.346	42.418	0.0097351	1116	34	0.94976085	0.020163655	0.9482414	384.38727	0	8.160614						68	4	2	NaN	NaN	NaN	0.2154	1	18255	18255		28.896	17.725	1	5896			15354	4529	8899	9084	12151	12151					0.036492382965434444
LPVDEFLPIMF	11	Oxidation (M)	_LPVDEFLPIM(Oxidation (M))F_		LPVDEFLPIM(1)F		LPVDEFLPIM(50)F	0	0	1		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.8465071849	2	668.846507	1335.67846	0.90168	0.00060309	-1.7563	-0.0011747	-0.85463	-0.00057162	668.8451919765808	38.059	0.21624	38.059	37.987	38.203	0	1107	91	0.9552588	0.054953218	0.9552588	386.56442	0	22.237915						589	10	4	NaN	NaN	NaN	0.049511	1	19345	19345		49.961	29.513	1	95939			15355	4529	8899	9085	12152	12152		479			0.02404934433911876
LPVDEFLPIMF	11	Oxidation (M)	_LPVDEFLPIM(Oxidation (M))F_		LPVDEFLPIM(1)F		LPVDEFLPIM(45)F	0	0	1		nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	nc|ENSG00000167123|Q5T4B2-2|CERCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.8465071849	2	668.846507	1335.67846	1.6553	0.0011071	-2.316	-0.0015491	-0.66072	-0.00044192	668.8450161160002	38.033	0.21635	38.036	37.964	38.18	0.0034256	1107	82	0.9552588	0.04944992	0.9537394	386.56442	0	20.010864						595	10	4	NaN	NaN	NaN	0.068415	1	18476	18476		45.165	26.001	1	89508			15356	4529	8899	9085	12153	12153		479			0.02404934433911876
LPVDFERSF	9	Unmodified	_LPVDFERSF_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2849313833501	2	555.284931	1108.55531	1.4078	0.0007817	-1.3444	-0.00074654	0.063333	3.5168E-05	555.2842024430834	24.864	0.26547	24.864	24.767	25.033	0	1245	130	0.87076044	0.07917982	0.87076044	353.1088	0	32.108795						599	12	4	NaN	NaN	NaN	0.070055	1	13229	13229		40.154	22.355	1	83280			15357	22	8900	9086	12154	12154					0.0053743909768400044
LPVDFERSF	9	Unmodified						0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.284931	1108.55531	1.4609	0.00081123	-0.81637	-0.00045332	0.64455	0.00035791	555.2845954774936	24.864	0.24129	24.851	24.827	25.068	-0.012392	1248	100	0.8689189	0.060739636	0.86739945	352.362		24.630981	-0.0062941	0.00029527	-0.0016805	NaN	40.154	460	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79662			15358	22	8900	9086							0.0053743909768400044
LPVDFVECL	9	Unmodified	_LPVDFVECL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5226953203	1	1034.5227	1033.51542	1.8147	0.0018773	-2.4289	-0.0025127	-0.61416	-0.00063536	1034.5194366684339	34.372	0.60308	34.372	34.083	34.686	0	213	112	1.4926696	0.06561124	1.4926696	302.92557	0	13.315277						1084	26	3	NaN	NaN	NaN	0.025843	1	9922	9922		64.55	22.765	1	170070			15359	4104;3971	8901	9087	12155	12155					1.7610275335755432E-06
LPVDFVECL	9	Unmodified	_LPVDFVECL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	nc|ENSG00000161791|Q8IVF7-2|FMNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5226953203	1	1034.5227	1033.51542	1.3984	0.0014467	-3.2266	-0.003338	-1.8281	-0.0018912	1034.5190279824355	34.347	0.67535	34.346	33.96	34.635	-0.0012474	210	97	1.4944444	0.056759953	1.4929249	303.28574	0	11.518982						899	29	2	NaN	NaN	NaN	0.043119	1	9714	9714		49.833	12.602	1	165950			15360	4104;3971	8901	9087	12156	12156					1.7610275335755432E-06
LPVDINDIF	9	Unmodified	_LPVDINDIF_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.28185737815	2	523.281857	1044.54916	0.68123	0.00035648	-4.2771	-0.0022381	-3.5959	-0.0018817	523.2792722373365	33.576	0.096409	33.576	33.528	33.624	0	1260	64	0.8615505	0.03870684	0.8615505	349.63678	0	15.70813						94	5	2	NaN	NaN	NaN	0.59509	1	10403	10403		5.6942	2.1209	1	7726.9			15361	4314	8902	9088	12157	12157					0.02866920866131295
LPVDINDIF	9	Unmodified	_LPVDINDIF_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5564382896998	1	1045.55644	1044.54916	1.0885	0.0011381	-0.087221	-9.1194E-05	1.0013	0.0010469	1045.5565314538292	33.552	0.096409	33.552	33.528	33.624	0	162	73	1.5228153	0.042524815	1.5228153	309.0004	0	8.628876						151	5	2	NaN	NaN	NaN	0.03618	1	10406	10406		52.78	12.626	1	17759			15362	4314	8902	9088	12158	12158					0.02866920866131295
LPVDINDIF	9	Unmodified	_LPVDINDIF_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5564382896998	1	1045.55644	1044.54916	0.6864	0.00071767	0.25887	0.00027067	0.94527	0.00098833	1045.5560282451431	33.551	0.14482	33.549	33.501	33.645	-0.0018463	156	67	1.5263584	0.038977027	1.5248389	309.7193	0	7.908966						188	7	3	NaN	NaN	NaN	0.064504	1	10195	10195		40.957	13.661	1	17003			15363	4314	8902	9088	12159	12159					0.02866920866131295
LPVDLAEEL	9	Unmodified	_LPVDLAEEL_					0	0	0		CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant;nc|ENSG00000147889|P42771-2|CDKN2A;chr9:21971208-21994821|328|11.31|0.28|5.33|-|ENST00000498628|CDKN2A,CDKN2A;chr9:21968242-21970976|293|12.49|0.04|8.4|-|ENST00000579122|CDKN2A,CDKN2A;ENSG00000147889|ENST00000304494|CDKN2A;nc|ENSG00000147889|P42771-4|CDKN2A;chr9:21968771-21970902|334|19.82|0.1|7.58|-|ENST00000498124|CDKN2A,CDKN2A	CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant	CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5404538745	1	998.540454	997.533177	2.0337	0.0020307	0.03437	3.432E-05	2.0681	0.0020651	998.5393453140736	29.836	0.096561	29.836	29.787	29.884	0	213	88	1.4926696	0.051474214	1.4926696	303.06943	0	10.451263						271	5	3	NaN	NaN	NaN	0.012648	1	8485	8485		84.879	22.902	1	38126			15364	91	8903	9089	12160	12160					0.034312146292336365
LPVDLAEEL	9	Unmodified	_LPVDLAEEL_					0	0	0		CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant;nc|ENSG00000147889|P42771-2|CDKN2A;chr9:21971208-21994821|328|11.31|0.28|5.33|-|ENST00000498628|CDKN2A,CDKN2A;chr9:21968242-21970976|293|12.49|0.04|8.4|-|ENST00000579122|CDKN2A,CDKN2A;ENSG00000147889|ENST00000304494|CDKN2A;nc|ENSG00000147889|P42771-4|CDKN2A;chr9:21968771-21970902|334|19.82|0.1|7.58|-|ENST00000498124|CDKN2A,CDKN2A	CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant	CDKN2A|p.R112H|1|0.32|ENSG00000147889|chr9:21971024-21971024|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5404538745	1	998.540454	997.533177	1.2852	0.0012833	-0.1748	-0.00017455	1.1104	0.0011088	998.5392771153453	29.835	0.096516	29.828	29.779	29.876	-0.0070667	210	100	1.4944444	0.05858648	1.4929249	303.42978	0	11.895325						257	5	3	NaN	NaN	NaN	0.074859	1	8308	8308		39.459	11.67	1	34022			15365	91	8903	9089	12161	12161					0.034312146292336365
LPVEDDIDL	9	Unmodified	_LPVEDDIDL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5146330544999	1	1028.51463	1027.50736	1.9488	0.0020044	2.5198	0.0025916	4.4686	0.0045961	1028.515972064087	27.35	0.26552	27.35	27.277	27.543	0	207	118	1.496219	0.06915057	1.496219	303.66925	0	14.034637						341	12	2	NaN	NaN	NaN	0.021105	1	9667	9667		70.6	23.464	1	170680			15366	3453	8904	9090	12162	12162					-0.005296796130551229
LPVEDDIDL	9	Unmodified	_LPVEDDIDL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5146330544999	1	1028.51463	1027.50736	1.4169	0.0014573	2.6039	0.0026782	4.0208	0.0041355	1028.5150262610766	27.373	0.26545	27.363	27.267	27.532	-0.010126	204	112	1.4979934	0.065597415	1.496474	304.02936	0	13.313477						497	12	3	NaN	NaN	NaN	0.014046	1	9477	9477		80.639	25.145	1	175130			15367	3453	8904	9090	12163	12163					-0.005296796130551229
LPVEEEAVTL	10	Unmodified	_LPVEEEAVTL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5881323486	1	1099.58813	1098.58086	2.4273	0.002669	-0.29677	-0.00032632	2.1305	0.0023427	1099.5878646976364	26.143	0.16893	26.143	26.094	26.263	0	114	100	1.5511382	0.058387995	1.5511382	314.54565	0	11.840149						455	8	4	NaN	NaN	NaN	0.0065408	1	12799	12799		75.698	17.499	1	123220			15368	3658	8905	9091	12164	12164					0.03550868829438514
LPVEEEAVTL	10	Unmodified	_LPVEEEAVTL_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5881323486	1	1099.58813	1098.58086	2.5981	0.0028568	-1.5164	-0.0016674	1.0817	0.0011894	1099.586520381224	26.143	0.16891	26.131	26.083	26.252	-0.011137	114	94	1.5511382	0.054843545	1.5496187	314.54565	0	11.121399						442	8	4	NaN	NaN	NaN	0.019347	1	12466	12466		63.958	21.641	1	117080			15369	3658	8905	9091	12165	12165					0.03550868829438514
LPVEEFNEL	9	Unmodified	_LPVEEFNEL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5462675339	1	1089.54627	1088.53899	2.2775	0.0024815	-0.89451	-0.00097462	1.383	0.0015069	1089.5455682340043	27.833	0.14479	27.833	27.784	27.929	0	126	112	1.544062	0.06551397	1.544062	313.14655	0	13.286682						420	7	4	NaN	NaN	NaN	5.1574E-18	1	12321	12321		159.67	92.513	1	109290			15370	937	8906	9092	12166	12166					-0.0017368685910241766
LPVEEFNEL	9	Unmodified	_LPVEEFNEL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5462675339	1	1089.54627	1088.53899	1.0395	0.0011326	-0.36501	-0.0003977	0.67448	0.00073487	1089.5460120222292	27.832	0.16896	27.822	27.798	27.967	-0.009552	123	112	1.5458313	0.06549311	1.5443119	313.50537	0	13.282471						446	8	4	NaN	NaN	NaN	1.7723E-07	1	12016	12016		134.97	79.56	1	112730			15371	937	8906	9092	12167	12167					-0.0017368685910241766
LPVEEFNELL	10	Unmodified	_LPVEEFNELL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.8188039904501	2	601.818804	1201.62306	1.1522	0.00069344	-2.453	-0.0014763	-1.3008	-0.00078282	601.8175408668051	32.394	0.12063	32.394	32.345	32.466	0	1152	85	0.92775106	0.051417053	0.92775106	375.86148	0	20.830688						402	6	4	NaN	NaN	NaN	0.25724	1	16523	16523		30.61	4.4952	1	72809			15372	937	8907	9093	12168	12168					0.030308442378100153
LPVEEFNELL	10	Unmodified	_LPVEEFNELL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.8188039904501	2	601.818804	1201.62306	0.60598	0.00036469	-2.4041	-0.0014468	-1.7981	-0.0010821	601.8178243945137	32.369	0.14479	32.365	32.316	32.461	-0.0037613	1149	85	0.92958635	0.051417053	0.9280669	376.60498	0	20.830688						415	7	5	NaN	NaN	NaN	0.011153	1	15876	15876		69.782	31.651	1	81076			15373	937	8907	9093	12169	12169					0.030308442378100153
LPVFPFREELL	11	Unmodified	_LPVFPFREELL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3871881169001	2	680.387188	1358.75982	1.0844	0.0007378	-2.066	-0.0014057	-0.98158	-0.00066785	680.3859280811158	31.694	0.14484	31.694	31.646	31.79	0	1080	61	0.9717421	0.036603868	0.9717421	393.1663	0	14.809906						332	7	4	NaN	NaN	NaN	0.077819	1	19665	19665		42.779	8.325	1	70947			15374	5893	8908	9094	12170	12170					0.09479378188189003
LPVFPFREELL	11	Unmodified	_LPVFPFREELL_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3871881169001	2	680.387188	1358.75982	0.65957	0.00044876	-1.7726	-0.0012061	-1.113	-0.00075729	680.3856363403104	31.741	0.21723	31.737	31.664	31.881	-0.0044155	1077	61	0.9735726	0.036599934	0.9720532	393.90692	0	14.808319						410	10	4	NaN	NaN	NaN	0.085079	1	18767	18767		41.017	20.503	1	80198			15375	5893	8908	9094	12171	12171					0.09479378188189003
LPVGTTATL	9	Unmodified	_LPVGTTATL_					0	0	0		ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14674592-14674910:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5087598156	1	872.50876	871.501483	2.0077	0.0017517	-0.050219	-4.3816E-05	1.9575	0.0017079	872.5085638937695	23.079	0.12045	23.079	23.031	23.152	0	399	76	1.382264	0.04466772	1.382264	281.2054	0	9.087128						235	6	3	NaN	NaN	NaN	0.028349	1	5686	5686		61.271	16.969	1	33763			15376	1164	8909	9095	12172	12172					0.060592666659431416
LPVGTTATL	9	Unmodified	_LPVGTTATL_					0	0	0		ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14674592-14674910:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5087598156	1	872.50876	871.501483	1.3317	0.0011619	0.83528	0.00072879	2.167	0.0018907	872.5093595322277	23.103	0.14459	23.09	23.041	23.186	-0.013294	396	76	1.3840506	0.04467249	1.3825312	281.56888	0	9.088104						247	7	3	NaN	NaN	NaN	0.02781	1	5547	5547		61.977	27.538	1	33764			15377	1164	8909	9095	12173	12173					0.060592666659431416
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.79493496365	2	512.794935	1023.57532	2.3036	0.0011812	-2.0476	-0.00105	0.25593	0.00013124	512.7941914188093	26.432	0.19307	26.432	26.384	26.577	0	1269	79	0.8560222	0.04794085	0.8560222	347.48584	0	19.460693						337	9	4	NaN	NaN	NaN	0.12945	1	9529	9529		31.561	9.4347	1	80675			15378	1291	8910	9096	12174	12174					0.06447234828260662
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.79493496365	2	512.794935	1023.57532	1.2724	0.00065249	-0.63385	-0.00032503	0.63857	0.00032746	512.7947571122096	26.48	0.14479	26.47	26.421	26.566	-0.010645	1266	76	0.85786515	0.046094477	0.8563457	348.23395	0	18.711182						314	7	3	NaN	NaN	NaN	0.032417	1	9351	9351		55.947	25.156	1	74201			15379	1291	8910	9096	12175	12175					0.06447234828260662
LPVKVVVDVL	10	Unmodified	_LPVKVVVDVL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.8549925315001	2	540.854993	1079.69543	1.0273	0.00055563	-2.7676	-0.0014969	-1.7403	-0.00094123	540.8532333451852	27.59	0.072414	27.581	27.533	27.605	-0.009552	1227	55	0.88180584	0.03313607	0.8802864	357.70523	0	13.441681						118	4	3	NaN	NaN	NaN	0.58645	1	11669	11669		15.822	1.7803	1	19812			15380	654	8911	9097	12176	12176					0.15877223102052085
LPVKVVVDVL	10	Unmodified						0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.854993	1079.69543	1.4463	0.00078224	-0.94961	-0.0005136	0.4967	0.00026864	540.8545836118034	27.543	0.048288	27.543	27.519	27.567	0	1230	58	0.8799654	0.034978867	0.8799654	356.95868		14.189178	-0.018965	0.0007079	-0.00016048	NaN	15.822	93	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15213			15381	654	8911	9097							0.15877223102052085
LPVLDNPL	8	Unmodified	_LPVLDNPL_					0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.5138451935001	1	880.513845	879.506569	1.7505	0.0015414	-0.12009	-0.00010574	1.6305	0.0014356	880.5133984357567	28.508	0.14484	28.508	28.46	28.605	0	303	76	1.4393384	0.044530153	1.4393384	292.77512	0	9.057831						208	7	3	NaN	NaN	NaN	0.084194	1	5794	5794		68.108	15.484	1	25886			15382	5052	8912	9098	12177	12177					0.06199570528565346
LPVLDNPL	8	Unmodified	_LPVLDNPL_					0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.5138451935001	1	880.513845	879.506569	1.1075	0.00097515	-0.62957	-0.00055434	0.47791	0.00042081	880.513486755849	28.507	0.096508	28.499	28.475	28.572	-0.0083485	303	79	1.4393384	0.046313763	1.437819	292.77515	0	9.420654						201	5	3	NaN	NaN	NaN	0.11528	1	5673	5673		61.271	19.811	1	27026			15383	5052	8912	9098	12178	12178					0.06199570528565346
LPVLEISL	8	Unmodified	_LPVLEISL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518946.1_1_5:153372538-153374550:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.5498963488002	1	883.549896	882.54262	1.0487	0.00092655	-1.1618	-0.0010265	-0.11309	-9.9921E-05	883.5485396947886	33.456	0.096535	33.456	33.407	33.504	0	345	76	1.4143922	0.044587016	1.4143922	287.6856	0	9.068939						170	5	3	NaN	NaN	NaN	0.078841	1	5838	5838		69.745	0	1	20037			15384	600	8913	9099	12179	12179					0.09665027705432294
LPVLEISL	8	Unmodified						0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518946.1_1_5:153372538-153374550:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	883.549896	882.54262	0.78731	0.00069563	-0.52597	-0.00046472	0.26134	0.00023091	883.5494029557376	33.43	0.096512	33.428	33.404	33.501	-0.0018501	339	76	1.4179583	0.044587016	1.4164388	288.41092		9.068939	-0.013673	0.00020435	0.0010233	NaN	69.745	183	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19508			15385	600	8913	9099							0.09665027705432294
LPVLESFKVSF	11	Unmodified	_LPVLESFKVSF_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3606390154	2	633.360639	1264.70673	1.4007	0.00088715	-3.2756	-0.0020746	-1.8749	-0.0011875	633.3578647071186	30.535	0.16891	30.535	30.439	30.608	0	1125	52	0.9442611	0.031165361	0.9442611	382.33347	0	12.618927						221	8	3	NaN	NaN	NaN	0.16517	1	18105	18105		33.567	18.713	1	26549			15386	2164	8914	9100	12180	12180					0.0849600040551195
LPVLESFKVSF	11	Unmodified	_LPVLESFKVSF_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.3606390154	2	633.360639	1264.70673	1.0696	0.00067743	-2.9208	-0.0018499	-1.8512	-0.0011725	633.3590935484966	30.534	0.14476	30.529	30.456	30.601	-0.0057545	1122	55	0.9460945	0.03300035	0.9445751	383.07584	0	13.361938						217	7	3	NaN	NaN	NaN	0.073935	1	17305	17305		43.765	23.077	1	27797			15387	2164	8914	9100	12181	12181					0.0849600040551195
LPVLLEGGVQ	10	Unmodified	_LPVLLEGGVQ_					0	0	0		ENST00000531958.5_1_11:67184814-67192505:+|nuORF;nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	ENST00000531958.5_1_11:67184814-67192505:+|nuORF	ENST00000531958.5_1_11:67184814-67192505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.8054996499501	2	512.8055	1023.59645	1.2052	0.00061803	5.6118	0.0028777	6.817	0.0034958	512.8085795136603	37.937	0.21632	37.94	37.868	38.084	0.0034256	1257	91	0.86339295	0.055238724	0.8618735	350.47772	0	22.423065						305	10	4	NaN	NaN	NaN	0.64889	1	9355	9355		11.548	1.8025	1	37915			15388	4841	8915	9101	12182	12182					0.08559200137142398
LPVLNMELW	9	Unmodified	_LPVLNMELW_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8019027160001	2	557.801903	1113.58925	1.832	0.0010219	-9.5442	-0.0053238	-7.7122	-0.0043019	557.7969509486134	23.513	0.28927	23.513	23.393	23.682	0	1269	94	0.8560222	0.05708307	0.8560222	347.11295	0	23.146912						498	13	4	NaN	NaN	NaN	0.089764	1	13432	13432		37.302	7.704	1	76874	+		15389	9718	8916	9102	12183	12183					0.03700144265076233
LPVLNMELW	9	Unmodified						0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.801903	1113.58925	1.832	0.0010219	-9.5442	-0.0053238	-7.7122	-0.0043019	557.7969509486134	23.513	0.28927	23.513	23.393	23.682	0	1269	94	0.8560222	0.05708307	0.8560222	347.11295		23.146912	-0.005343	0.00068109	0.00075972	NaN	37.302	498	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76874	+		15390	9718	8916	9102							0.03700144265076233
LPVMPVALL	9	Unmodified	_LPVMPVALL_					0	0	0			REV__ENSG00000169359|ENST00000643144|SLC33A1	REV__ENSG00000169359|ENST00000643144|SLC33A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.5899870245001	1	952.589987	951.582711	0.90053	0.00085783	0.80619	0.00076797	1.7067	0.0016258	952.5902869533986	35.506	0.072388	35.506	35.482	35.554	0	258	76	1.4660252	0.044454455	1.4660252	297.85544	0	9.031891						141	4	3	NaN	NaN	NaN	0.10053	1	7135	7135		35.745	0	1	15092	+		15391	10547	8917	9103	12184	12184					0.10498251104343126
LPVNDEHVTV	10	Unmodified	_LPVNDEHVTV_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7931205562	2	561.793121	1121.57169	2.1757	0.0012223	-1.8831	-0.0010579	0.29256	0.00016436	561.7920148797486	18.892	0.16808	18.892	18.796	18.964	0	1236	55	0.876284	0.03313607	0.876284	355.29807	0	13.435333						258	8	4	NaN	NaN	NaN	0.018338	1	13742	13742		64.375	37.079	1	59329			15392	3513	8918	9104	12185	12185					0.0157652026375672
LPVNDEHVTV	10	Unmodified	_LPVNDEHVTV_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7931205562	2	561.793121	1121.57169	1.6643	0.00093497	-0.62914	-0.00035344	1.0351	0.00058153	561.7930654877154	18.914	0.16822	18.9	18.828	18.996	-0.014059	1236	49	0.876284	0.02945429	0.8747646	355.29807	0	11.942505						279	8	5	NaN	NaN	NaN	0.16811	1	13340	13340		38.269	16.434	1	62710			15393	3513	8918	9104	12186	12186					0.0157652026375672
LPVNESFGF	9	Unmodified	_LPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.4989234108002	1	1009.49892	1008.49165	1.7731	0.0017899	-1.4238	-0.0014373	0.34927	0.00035259	1009.4976866280168	28.46	0.21721	28.46	28.339	28.556	0	231	73	1.4820169	0.042628646	1.4820169	300.86194	0	8.653992						333	10	3	NaN	NaN	NaN	0.077759	1	8922	8922		39.039	14.477	1	40833			15394	4557	8919	9105	12187	12187					-0.012259213394145263
LPVNESFGF	9	Unmodified	_LPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.4989234108002	1	1009.49892	1008.49165	1.374	0.001387	-1.201	-0.0012124	0.17295	0.00017459	1009.4964806254169	28.459	0.26544	28.451	28.354	28.62	-0.0083504	231	82	1.4820169	0.04794967	1.4804975	300.86194	0	9.734192						420	12	3	NaN	NaN	NaN	0.013696	1	8749	8749		81.699	37.061	1	45452			15395	4557	8919	9105	12188	12188					-0.012259213394145263
LPVNGEFSL	9	Unmodified	_LPVNGEFSL_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.514573475	1	975.514573	974.507297	2.0056	0.0019565	-0.17242	-0.0001682	1.8332	0.0017883	975.5138766511432	27.76	0.26544	27.76	27.688	27.953	0	258	109	1.4660252	0.06403148	1.4660252	297.75543	0	13.005035						491	12	4	NaN	NaN	NaN	0.030545	1	7740	7740		58.398	21.811	1	87510			15396	3362	8920	9106	12189	12189					0.01902365177613774
LPVNGEFSL	9	Unmodified	_LPVNGEFSL_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.514573475	1	975.514573	974.507297	1.4452	0.0014098	0.12217	0.00011918	1.5674	0.001529	975.5137712298681	27.783	0.16898	27.774	27.702	27.87	-0.009552	255	103	1.4678029	0.060474157	1.4662834	298.1165	0	12.282532						393	8	3	NaN	NaN	NaN	0.01966	1	7583	7583		72.428	35.126	1	83207			15397	3362	8920	9106	12190	12190					0.01902365177613774
LPVNQNWERY	10	Unmodified	_LPVNQNWERY_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.830568695	2	659.830569	1317.64658	1.5891	0.0010486	-6.4475	-0.0042542	-4.8583	-0.0032057	659.826709559004	23.634	0.072325	23.634	23.61	23.682	0	1143	46	0.9332562	0.027519584	0.9332562	377.71356	0	11.137909						80	4	3	NaN	NaN	NaN	0.37681	1	19072	19072		24.562	5.2256	1	8364.8			15398	3272	8921	9107	12191	12191					0.00046702794975317374
LPVNQNWERY	10	Unmodified	_LPVNQNWERY_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.830568695	2	659.830569	1317.64658	1.92	0.0012669	-7.5645	-0.0049913	-5.6444	-0.0037244	659.8265261223975	23.682	0.072254	23.669	23.645	23.717	-0.013048	1143	43	0.9332562	0.025683582	0.93173677	377.71356	0	10.394836						110	4	4	NaN	NaN	NaN	0.62092	1	18225	18225		13.463	1.7242	1	10372			15399	3272	8921	9107	12192	12192					0.00046702794975317374
LPVPMDAAL	9	Unmodified	_LPVPMDAAL_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.5015659477	1	926.501566	925.494289	1.9476	0.0018044	0.52467	0.00048611	2.4722	0.0022905	926.502792777077	28.653	0.21721	28.653	28.532	28.75	0	339	82	1.4179583	0.048143744	1.4179583	288.2054	0	9.78537						333	10	4	NaN	NaN	NaN	0.023074	1	6506	6506		68.108	41.993	1	55903			15400	1825	8922	9108	12193	12193					0.028562107938682857
LPVPMDAAL	9	Unmodified	_LPVPMDAAL_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.5015659477	1	926.501566	925.494289	0.77463	0.0007177	0.59307	0.00054948	1.3677	0.0012672	926.5029002140749	28.652	0.1689	28.644	28.572	28.74	-0.0083485	336	67	1.419741	0.03921783	1.4182216	288.56775	0	7.971161						278	8	4	NaN	NaN	NaN	0.02781	1	6378	6378		61.977	32.378	1	52634			15401	1825	8922	9108	12194	12194					0.028562107938682857
LPVPMDAAL	9	Oxidation (M)	_LPVPM(Oxidation (M))DAAL_		LPVPM(1)DAAL		LPVPM(96)DAAL	0	0	1		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4964805698	1	942.496481	941.489204	1.4954	0.0014094	-0.41791	-0.00039387	1.0775	0.0010155	942.4958917793446	24.719	0.21714	24.719	24.647	24.864	0	327	94	1.425088	0.055258393	1.425088	289.58243	0	11.228699						268	10	2	NaN	NaN	NaN	0.0081087	1	6848	6848		96.245	42.922	1	64786			15402	1825	8922	9109	12195	12195		206			0.016119069312594547
LPVPMDAAL	9	Oxidation (M)	_LPVPM(Oxidation (M))DAAL_		LPVPM(1)DAAL		LPVPM(68)DAAL	0	0	1		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4964805698	1	942.496481	941.489204	1.5592	0.0014696	-1.0866	-0.0010242	0.47258	0.00044541	942.4963173924599	24.719	0.16886	24.707	24.658	24.827	-0.012392	324	91	1.42687	0.053472996	1.4253505	289.94452	0	10.865906						329	8	4	NaN	NaN	NaN	0.023074	1	6711	6711		68.108	37.317	1	61259			15403	1825	8922	9109	12196	12196		206			0.016119069312594547
LPVPWEVTL	9	Unmodified	_LPVPWEVTL_					0	0	0		ENST00000360862.9_2_16:3534964-3535998:+|nuORF;ENST00000407558.8_1_16:3534861-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5979091739	1	1053.59791	1052.59063	2.0383	0.0021475	-1.2457	-0.0013125	0.79253	0.00083501	1053.5972447937365	34.396	0.12053	34.396	34.348	34.469	0	126	109	1.544062	0.063753486	1.544062	313.28043	0	12.935181						221	6	2	NaN	NaN	NaN	0.025843	1	10759	10759		64.55	34.952	1	25685			15404	6600	8923	9110	12197	12197					0.06644101625465737
LPVPWEVTL	9	Unmodified	_LPVPWEVTL_					0	0	0		ENST00000360862.9_2_16:3534964-3535998:+|nuORF;ENST00000407558.8_1_16:3534861-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5979091739	1	1053.59791	1052.59063	1.3584	0.0014312	-0.021982	-2.316E-05	1.3364	0.001408	1053.5983486365317	34.395	0.096375	34.395	34.346	34.443	-0.0006485	120	124	1.5476005	0.07259655	1.5460811	313.99835	0	14.729401						185	5	2	NaN	NaN	NaN	0.10956	1	10532	10532		34.439	15.275	1	21644			15405	6600	8923	9110	12198	12198					0.06644101625465737
LPVQEYLF	8	Unmodified	_LPVQEYLF_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENST00000488052.1_1_22:29927628-29932726:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.540059944	1	1008.54006	1007.53278	1.4002	0.0014122	5.2145	0.005259	6.6147	0.0066712	1008.5456346382338	30.801	0.24128	30.801	30.704	30.946	0	195	136	1.5033154	0.07985687	1.5033154	305.1896	0	16.211823						561	11	4	NaN	NaN	NaN	0.11528	1	8894	8894		61.271	14.231	1	150840			15406	1218	8924	9111	12199	12199					0.029318397000338337
LPVQEYLF	8	Unmodified	_LPVQEYLF_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENST00000488052.1_1_22:29927628-29932726:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.540059944	1	1008.54006	1007.53278	1.5718	0.0015853	4.9315	0.0049736	6.5034	0.0065589	1008.5453649464383	30.8	0.19305	30.794	30.698	30.891	-0.0057545	201	127	1.4997677	0.074513316	1.4982482	304.46936	0	15.127014						585	9	4	NaN	NaN	NaN	0.20037	1	8724	8724		49.961	15.523	1	149590			15407	1218	8924	9111	12200	12200					0.029318397000338337
LPVQPENAL	9	Unmodified	_LPVQPENAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5411225765	1	980.541123	979.533846	2.3044	0.0022595	-0.59603	-0.00058443	1.7083	0.0016751	980.5404484385248	22.959	0.12039	22.959	22.911	23.031	0	276	79	1.4553556	0.046235085	1.4553556	295.56723	0	9.389832						308	6	3	NaN	NaN	NaN	0.0098181	1	7874	7874		92.758	31.774	1	57475			15408	3413	8925	9112	12201	12201					0.04326054068940266
LPVQPENAL	9	Unmodified	_LPVQPENAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5411225765	1	980.541123	979.533846	1.9236	0.0018862	-0.59529	-0.0005837	1.3283	0.0013025	980.5404514161733	22.982	0.1446	22.969	22.921	23.065	-0.01354	273	88	1.4571344	0.05157268	1.4556149	295.9285	0	10.473877						311	7	3	NaN	NaN	NaN	0.019939	1	7709	7709		72.076	16.663	1	54300			15409	3413	8925	9112	12202	12202					0.04326054068940266
LPVQPEVAL	9	Unmodified	_LPVQPEVAL_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2;ENST00000573311.1_1_16:2818098-2819286:+|nuORF;ENST00000574593.1_1_16:2817540-2819884:+|nuORF	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.5666090455001	1	965.566609	964.559333	1.7013	0.0016427	0.79882	0.00077131	2.5001	0.002414	965.5669239050638	26.601	0.096554	26.601	26.553	26.65	0	288	64	1.4482387	0.037373424	1.4482387	294.1852	0	7.591797						151	5	3	NaN	NaN	NaN	0.42817	1	7474	7474		12.57	3.6077	1	20427			15410	4581	8926	9113	12203	12203					0.07563528591379054
LPVRIFVAL	9	Unmodified	_LPVRIFVAL_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.3367699886	2	514.33677	1026.65899	1.8607	0.00095702	-0.59327	-0.00030514	1.2674	0.00065188	514.3362258976936	29.667	0.096531	29.667	29.618	29.715	0	1284	40	0.8468043	0.023971736	0.8468043	343.7303	0	9.730469						96	5	3	NaN	NaN	NaN	0.18779	1	9645	9645		26.115	8.3346	1	9809.8			15411	324	8927	9114	12204	12204					0.14672390995974638
LPVRIFVAL	9	Unmodified						0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.33677	1026.65899	0.99024	0.00050932	-2.6865	-0.0013818	-1.6963	-0.00087246	514.335518343269	29.69	0.12067	29.683	29.635	29.755	-0.0070648	1284	43	0.8468043	0.025811553	0.8452849	343.73032		10.477264	0.0081064	-0.0013007	-0.00075972	NaN	26.115	126	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11006			15412	324	8927	9114							0.14672390995974638
LPVSDEILF	9	Unmodified	_LPVSDEILF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5611893166	1	1032.56119	1031.55391	1.1583	0.0011961	-2.2229	-0.0022953	-1.0646	-0.0010993	1032.5578698311285	31.839	0.12065	31.839	31.79	31.911	0	177	64	1.5139546	0.03722298	1.5139546	307.25287	0	7.5543213						144	6	2	NaN	NaN	NaN	0.25448	1	9855	9855		21.835	1.2795	1	28868			15413	3224	8928	9115	12205	12205					0.039398050088948366
LPVSDEILF	9	Unmodified	_LPVSDEILF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5611893166	1	1032.56119	1031.55391	0.58877	0.00060794	-2.2966	-0.0023714	-1.7078	-0.0017635	1032.5582241901004	31.838	0.096523	31.833	31.785	31.881	-0.0044155	171	94	1.5174994	0.054930925	1.51598	307.9723	0	11.148071						212	5	3	NaN	NaN	NaN	0.030391	1	9646	9646		58.599	22.013	1	28257			15414	3224	8928	9115	12206	12206					0.039398050088948366
LPVSEVASIL	10	Unmodified	_LPVSEVASIL_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.6033884823	1	1027.60339	1026.59611	1.2629	0.0012978	0.45099	0.00046344	1.7139	0.0017612	1027.6037987390157	30.97	0.096546	30.97	30.922	31.018	0	201	58	1.4997677	0.03371024	1.4997677	304.39304	0	6.8418274						163	5	3	NaN	NaN	NaN	0.033206	1	9642	9642		58.235	15.918	1	16235			15415	449	8929	9116	12207	12207					0.08387780417297108
LPVSEVASIL	10	Unmodified	_LPVSEVASIL_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.6033884823	1	1027.60339	1026.59611	1.2227	0.0012565	-0.27718	-0.00028483	0.94555	0.00097165	1027.6021048805749	30.969	0.12068	30.964	30.891	31.012	-0.0050716	195	67	1.5033154	0.03903079	1.501796	305.11313	0	7.921692						177	6	3	NaN	NaN	NaN	0.013201	1	9452	9452		67.154	24.837	1	17932			15416	449	8929	9116	12208	12208					0.08387780417297108
LPVSTTSQ	8	Unmodified	_LPVSTTSQ_					0	0	0		ENST00000517544.1_1_11:117973956-117978595:+|nuORF	ENST00000517544.1_1_11:117973956-117978595:+|nuORF	ENST00000517544.1_1_11:117973956-117978595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4410741809	1	832.441074	831.433798	0.93527	0.00077856	3.9507	0.0032887	4.886	0.0040673	832.4441486550187	30.052	0.096533	30.045	29.997	30.094	-0.0064106	453	55	1.3500742	0.03222072	1.3485547	274.8623	0	6.559845						146	5	3	NaN	NaN	NaN	0.65542	1	5038	5038		21.835	1.2795	1	17716			15417	7377	8930	9117	12209	12209					0.011338167351482298
LPVSVFESV	9	Unmodified	_LPVSVFESV_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5349745661001	1	976.534975	975.527698	1.6111	0.0015733	-0.7532	-0.00073553	0.85789	0.00083776	976.5341662552039	29.474	0.14483	29.474	29.401	29.546	0	300	67	1.4411188	0.03916359	1.4411188	292.69257	0	7.9541626						194	7	3	NaN	NaN	NaN	0.01047	1	7768	7768		91.429	44.388	1	20747			15418	4595	8931	9118	12210	12210					0.03895535837432362
LPVSVFESV	9	Unmodified	_LPVSVFESV_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5349745661001	1	976.534975	975.527698	1.3863	0.0013538	-0.011641	-1.1367E-05	1.3746	0.0013424	976.5349186232161	29.473	0.096514	29.466	29.442	29.538	-0.0070667	300	67	1.4411188	0.03916359	1.4395994	292.69257	0	7.9541626						168	5	3	NaN	NaN	NaN	0.014046	1	7614	7614		80.639	30.806	1	19526			15419	4595	8931	9118	12211	12211					0.03895535837432362
LPVTEAQQL	9	Unmodified	_LPVTEAQQL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5516872628001	1	998.551687	997.544411	1.9305	0.0019277	2.2225	0.0022193	4.153	0.004147	998.5525302369126	21.802	0.072174	21.788	21.764	21.836	-0.013895	240	40	1.4766881	0.02309668	1.4751687	299.8245	0	4.689514						71	4	2	NaN	NaN	NaN	0.16939	1	8313	8313		27.296	4.1786	1	5515.6			15420	2037	8932	9119	12212	12212					0.04554036723379795
LPVTEAQQL	9	Unmodified						0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	998.551687	997.544411	2.0594	0.0020564	0.88866	0.00088737	2.9481	0.0029438	998.5525606109784	21.802	0.048149	21.802	21.778	21.826	0	240	43	1.4766881	0.024872065	1.4766881	299.8245		5.0499573	0.007022	-0.00043433	0.00075972	NaN	27.296	67	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5822			15421	2037	8932	9119							0.04554036723379795
LPVVDFNEM	9	Oxidation (M)	_LPVVDFNEM(Oxidation (M))_		LPVVDFNEM(1)		LPVVDFNEM(170)	0	0	1		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.5077735375999	1	1079.50777	1078.5005	1.9903	0.0021485	-1.1761	-0.0012697	0.81413	0.00087886	1079.5069486415998	25.757	0.28952	25.757	25.684	25.974	0	162	100	1.5228153	0.058487177	1.5228153	308.87357	0	11.863007						421	13	4	NaN	NaN	NaN	5.995099999999999E-26	1	11904	11904		172.73	117.32	1	78184			15422	2060	8933	9120	12213	12213		235			-0.03561315765273321
LPVVDFNEM	9	Oxidation (M)	_LPVVDFNEM(Oxidation (M))_		LPVVDFNEM(1)		LPVVDFNEM(55)	0	0	1		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2575250021	2	540.257525	1078.5005	2.151	0.0011621	-0.85544	-0.00046216	1.2956	0.00069993	540.257308755776	25.757	0.14477	25.757	25.708	25.853	0	1257	88	0.86339295	0.053429186	0.86339295	350.2409	0	21.67389						303	7	4	NaN	NaN	NaN	0.032826	1	11905	11905		55.413	33.642	1	43186			15423	2060	8933	9120	12214	12214		235			-0.03561315765273321
LPVVDFNEM	9	Oxidation (M)	_LPVVDFNEM(Oxidation (M))_		LPVVDFNEM(1)		LPVVDFNEM(78)	0	0	1		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.5077735375999	1	1079.50777	1078.5005	2.5388	0.0027407	-1.0382	-0.0011208	1.5006	0.0016199	1079.50660146762	25.756	0.16894	25.745	25.696	25.865	-0.0116	162	94	1.5228153	0.05494249	1.5212959	308.87357	0	11.144012						381	8	5	NaN	NaN	NaN	0.015447	1	11598	11598		77.761	47.151	1	71750			15424	2060	8933	9120	12215	12215		235			-0.03561315765273321
LPVVDFNEM	9	Unmodified	_LPVVDFNEM_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.5128589155	1	1063.51286	1062.50558	1.2608	0.0013409	-0.032856	-3.4943E-05	1.228	0.001306	1063.5128898909745	29.328	0.14478	29.32	29.272	29.417	-0.0077209	138	82	1.5369828	0.04781258	1.5354633	311.80646	0	9.6996765						324	7	3	NaN	NaN	NaN	6.5392E-05	1	10961	10961		125.02	82.702	1	89941			15425	2060	8933	9121	12216	12216					-0.023170119026417524
LPVVDFNEM	9	Unmodified						0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1063.51286	1062.50558	1.8061	0.0019208	1.0097	0.0010738	2.8158	0.0029946	1063.5143204136425	29.329	0.21715	29.329	29.256	29.474	0	138	85	1.5369828	0.049586058	1.5369828	311.80646		10.059479	0.0042606	0.00069518	0.00075972	NaN	125.02	241	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86338			15426	2060	8933	9121							-0.023170119026417524
LPVVFAVYL	9	Unmodified	_LPVVFAVYL_					0	0	0		ENST00000566455.1_1_16:77227993-77232202:+|nuORF	ENST00000566455.1_1_16:77227993-77232202:+|nuORF	ENST00000566455.1_1_16:77227993-77232202:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.8100537116	2	510.810054	1019.60555	1.2771	0.00065237	2.1538	0.0011002	3.4309	0.0017526	510.8109644534257	37.53	0.096333	37.53	37.506	37.602	0	1242	43	0.87260187	0.0257864	0.87260187	354.2343	0	10.468048						61	5	2	NaN	NaN	NaN	0.6762	1	9367	9367		1.2418	0	1	3366.2			15427	7626	8934	9122	12217	12217					0.09653593493464996
LPVVHEYVL	9	Unmodified	_LPVVHEYVL_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENST00000528257.1_1_11:107607174-107607519:-|nuORF	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.8080423389	2	534.808042	1067.60153	1.7095	0.00091424	-1.5539	-0.00083105	0.15556	8.3194E-05	534.807181509791	24.188	0.12069	24.188	24.14	24.261	0	1221	52	0.885486	0.03127992	0.885486	359.24936	0	12.690552						159	6	4	NaN	NaN	NaN	0.062072	1	11461	11461		41.785	15.053	1	35925			15428	4155	8935	9123	12218	12218					0.07043503999739187
LPVVHEYVL	9	Unmodified	_LPVVHEYVL_					0	0	0		ENSG00000162627|ENST00000306121|SNX7;nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENST00000528257.1_1_11:107607174-107607519:-|nuORF	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.8080423389	2	534.808042	1067.60153	1.0243	0.00054782	1.1755	0.00062867	2.1998	0.0011765	534.8086297758374	24.212	0.096506	24.199	24.151	24.248	-0.012749	1218	49	0.8873258	0.029438376	0.8858064	359.99576	0	11.94339						153	5	4	NaN	NaN	NaN	0.10956	1	11191	11191		34.439	9.4778	1	28228			15429	4155	8935	9123	12219	12219					0.07043503999739187
LPWAEFESL	9	Unmodified	_LPWAEFESL_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5407882255	1	1091.54079	1090.53351	1.2269	0.0013392	-0.52794	-0.00057627	0.69892	0.0007629	1091.5396143466344	32.755	0.33785	32.752	32.583	32.92	-0.0031013	84	121	1.5688156	0.070724726	1.5672961	318.1595	0	14.34314						665	15	4	NaN	NaN	NaN	0.0081087	1	12115	12115		96.245	55.289	1	155730			15430	3367	8936	9124	12220	12220					-0.008133656509016873
LPWGGGGQ	8	Unmodified	_LPWGGGGQ_					0	0	0		ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.3784143446002	1	771.378414	770.371138	1.0726	0.00082741	5.5327	0.0042678	6.6053	0.0050952	771.3835810135047	30.922	0.09654	30.922	30.897	30.994	0	564	49	1.2837118	0.028753877	1.2837118	261.6881	0	5.8615723						120	5	3	NaN	NaN	NaN	0.72043	1	4358	4358		17.78	4.0433	1	8142.7			15431	6281	8937	9125	12221	12221					-0.023232845423763138
LPWGGGGQ	8	Unmodified	_LPWGGGGQ_					0	0	0		ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.3784143446002	1	771.378414	770.371138	1.3631	0.0010515	4.5514	0.0035109	5.9146	0.0045624	771.3822385351219	30.92	0.14485	30.915	30.867	31.012	-0.0050716	561	70	1.2855089	0.041327238	1.2839894	262.05444	0	8.424652						165	7	2	NaN	NaN	NaN	0.69631	1	4286	4286		19.285	4.2718	1	17518			15432	6281	8937	9125	12222	12222					-0.023232845423763138
LPWSKAWEL	9	Unmodified	_LPWSKAWEL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.3056668254501	2	565.305667	1128.59678	2.3204	0.0013117	-1.6108	-0.00091062	0.70956	0.00040112	565.305177237089	27.881	0.26544	27.881	27.833	28.098	0	1227	127	0.88180584	0.07725072	0.88180584	357.5099	0	31.319702						741	12	4	NaN	NaN	NaN	0.030261	1	14036	14036		58.769	22.535	1	308940			15433	1254	8938	9126	12223	12223					0.03762619857002392
LPWSKAWEL	9	Unmodified	_LPWSKAWEL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.3056668254501	2	565.305667	1128.59678	1.4686	0.00083023	-1.1514	-0.0006509	0.31724	0.00017934	565.3055790718831	27.904	0.26547	27.895	27.846	28.112	-0.009552	1224	112	0.883646	0.06806517	0.88212657	358.25595	0	27.595642						851	12	4	NaN	NaN	NaN	0.02431	1	13594	13594		66.544	19.408	1	327030			15434	1254	8938	9126	12224	12224					0.03762619857002392
LPYAGDVSM	9	Unmodified	_LPYAGDVSM_					0	0	0		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4444449993001	1	952.444445	951.437169	1.6175	0.0015406	-0.37893	-0.00036091	1.2386	0.0011797	952.4432809642354	23.971	0.12061	23.971	23.947	24.068	0	342	115	1.4161754	0.067674994	1.4161754	287.72797	0	13.749695						306	6	3	NaN	NaN	NaN	0.043119	1	7113	7113		49.833	24.032	1	35050			15435	5718	8939	9127	12225	12225					-0.040492564824944566
LPYAGDVSM	9	Unmodified	_LPYAGDVSM_					0	0	0		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4444449993001	1	952.444445	951.437169	1.598	0.001522	0.24331	0.00023174	1.8413	0.0017538	952.4449778083473	23.995	0.16891	23.982	23.934	24.103	-0.013048	339	121	1.4179583	0.07122922	1.4164388	288.09018	0	14.471832						233	8	2	NaN	NaN	NaN	0.023074	1	6980	6980		68.108	33.67	1	31601			15436	5718	8939	9127	12226	12226					-0.040492564824944566
LPYAGDVSM	9	Oxidation (M)	_LPYAGDVSM(Oxidation (M))_		LPYAGDVSM(1)		LPYAGDVSM(81)	0	0	1		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4393596214002	1	968.43936	967.432083	1.9918	0.001929	-1.0375	-0.0010047	0.95435	0.00092423	968.4381849830617	19.924	0.12027	19.924	19.876	19.997	0	339	85	1.4179583	0.049892306	1.4179583	288.02222	0	10.134369						236	6	3	NaN	NaN	NaN	0.014046	1	7533	7533		80.639	46.94	1	27787			15437	5718	8939	9128	12227	12227		584			-0.052935603451032875
LPYDSTWEL	9	Unmodified	_LPYDSTWEL_					0	0	0		PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520229.1_1_5:149504284-149505071:-|nuORF;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1123.5306174696998	1	1123.53062	1122.52334	2.1229	0.0023851	3.3075	0.0037161	5.4304	0.0061012	1123.5351091999912	29.763	0.19307	29.763	29.715	29.908	0	72	49	1.5758814	0.028257012	1.5758814	319.47855	0	5.7285156						155	9	2	NaN	NaN	NaN	0.21451	1	13787	13787		34.439	10.588	1	14207			15438	1929	8940	9129	12228	12228					-0.03301973376164824
LPYDSTWEL	9	Unmodified						0	0	0		PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520229.1_1_5:149504284-149505071:-|nuORF;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1123.53062	1122.52334	1.1157	0.0012535	5.3878	0.0060534	6.5035	0.0073069	1123.5371901707197	29.786	0.19304	29.779	29.707	29.9	-0.0070648	69	61	1.5776473	0.03532493	1.5761279	319.83655		7.1614075	0.0080932	0.0011389	0.00012326	NaN	34.439	185	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15675			15439	1929	8940	9129							-0.03301973376164824
LPYEDVAIPL	10	Unmodified	_LPYEDVAIPL_					0	0	0		ENST00000503439.1_1_3:134201629-134201746:-|nuORF;ENSG00000129055|ENST00000354910|ANAPC13	ENST00000503439.1_1_3:134201629-134201746:-|nuORF	ENST00000503439.1_1_3:134201629-134201746:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1129.6139531686	1	1129.61395	1128.60668	1.4258	0.0016106	-0.40776	-0.00046061	1.0181	0.00115	1129.6144934283316	31.501	0.096544	31.501	31.477	31.573	0	75	64	1.5741152	0.037093043	1.5741152	319.0996	0	7.5193787						209	5	4	NaN	NaN	NaN	0.10964	1	14039	14039		44.638	16.85	1	26046			15440	2591	8941	9130	12229	12229					0.04751763071703863
LPYEDVAIPL	10	Unmodified	_LPYEDVAIPL_					0	0	0		ENST00000503439.1_1_3:134201629-134201746:-|nuORF;ENSG00000129055|ENST00000354910|ANAPC13	ENST00000503439.1_1_3:134201629-134201746:-|nuORF	ENST00000503439.1_1_3:134201629-134201746:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.6139531686	1	1129.61395	1128.60668	0.48355	0.00054623	0.51468	0.00058138	0.99823	0.0011276	1129.6143414472524	31.5	0.14481	31.495	31.447	31.592	-0.0044174	69	70	1.5776473	0.04062581	1.5761279	319.8156	0	8.235535						200	7	3	NaN	NaN	NaN	0.15427	1	13597	13597		39.459	11.67	1	26338			15441	2591	8941	9130	12230	12230					0.04751763071703863
LPYEEEIM	8	Oxidation (M)	_LPYEEEIM(Oxidation (M))_		LPYEEEIM(1)		LPYEEEIM(78)	0	0	1		ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.4652400209	1	1039.46524	1038.45796	2.1935	0.00228	-1.7202	-0.0017881	0.4733	0.00049197	1039.4662427627047	21.826	0.024067	21.812	21.812	21.836	-0.013895	201	34	1.4997677	0.019516349	1.4982482	304.34695	0	3.9604492						40	2	2	NaN	NaN	NaN	0.050534	1	9915	9915		78.398	22.45	1	2754.6			15442	859	8942	9131	12231	12231		91			-0.05972710893502153
LPYHQELKM	9	Unmodified	_LPYHQELKM_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.87071484369994	3	386.870715	1157.59032	1.6525	0.0006393	-2.0574	-0.00079596	-0.40495	-0.00015667	386.87048300412096	17.357	0.11989	17.357	17.309	17.429	0	1434	37	0.75435036	0.022249103	0.75435036	458.61023	0	13.526428						108	6	3	NaN	NaN	NaN	0.38313	1	15069	15069		9.5705	0	1	10522			15443	3520	8943	9132	12232	12232					0.017823586339318354
LPYHVAVLL	9	Unmodified	_LPYHVAVLL_					0	0	0		ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.8131277168001	2	512.813128	1023.6117	1.5964	0.00081865	-1.5426	-0.00079107	0.053772	2.7575E-05	512.8120384457926	26.891	0.048241	26.891	26.867	26.915	0	1257	49	0.86339295	0.029479682	0.86339295	350.47766	0	11.966736						55	3	2	NaN	NaN	NaN	0.48931	1	9535	9535		10.052	0	1	6137.9			15444	3476	8944	9133	12233	12233					0.10084111724984268
LPYPSSATL	9	Unmodified	_LPYPSSATL_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5036744377002	1	948.503674	947.496398	1.4954	0.0014184	-2.5479	-0.0024167	-1.0525	-0.00099827	948.5028047948615	24.043	0.12066	24.031	24.006	24.127	-0.012749	303	94	1.4393384	0.05518806	1.437819	292.45142	0	11.213348						318	6	3	NaN	NaN	NaN	0.23112	1	6887	6887		23.334	1.4994	1	40206			15445	1761	8945	9134	12234	12234					0.020549628033450063
LPYSSWLL	8	Unmodified	_LPYSSWLL_					0	0	0		ENST00000394181.6_1_3:98235525-98235600:-|nuORF	ENST00000394181.6_1_3:98235525-98235600:-|nuORF	ENST00000394181.6_1_3:98235525-98235600:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.76838586215007	2	489.768386	977.522219	1.475	0.00072239	-8.4995	-0.0041628	-7.0246	-0.0034404	489.7635898680287	21.127	0.072266	21.127	21.079	21.151	0	1320	52	0.824661	0.031384945	0.824661	334.96454	0	12.748077						101	4	3	NaN	NaN	NaN	0.72043	1	7821	7821		17.78	2.6049	1	10294			15446	6773	8946	9135	12235	12235					0.03255857045621724
LPYSSWLL	8	Unmodified						0	0	0		ENST00000394181.6_1_3:98235525-98235600:-|nuORF	ENST00000394181.6_1_3:98235525-98235600:-|nuORF	ENST00000394181.6_1_3:98235525-98235600:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	489.768386	977.522219	0.95323	0.00046686	-7.4358	-0.0036418	-6.4826	-0.003175	489.76418060349516	21.128	0.072174	21.114	21.089	21.162	-0.014004	1317	61	0.8265074	0.036925495	0.82498795	335.7145		14.998566	-0.0068722	0.00058194	0.00016347	NaN	17.78	119	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10886			15447	6773	8946	9135							0.03255857045621724
LPYSVIRGEEF	11	Unmodified	_LPYSVIRGEEF_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3429775785002	2	655.342978	1308.6714	1.1239	0.00073651	-1.8543	-0.0012152	-0.73042	-0.00047868	655.341994592083	24.068	0.07235	24.068	24.044	24.116	0	1131	88	0.94059354	0.053141534	0.94059354	380.71027	0	21.509308						188	4	3	NaN	NaN	NaN	0.58035	1	18909	18909		15.311	0.86143	1	24923			15448	84	8947	9136	12236	12236					0.029413378777235266
LPYTATIEDIL	11	Unmodified	_LPYTATIEDIL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8397363978	2	624.839736	1247.66492	0.88402	0.00055237	-8.0052	-0.0050019	-7.1211	-0.0044496	625.3355680525145	33.142	0.14477	33.142	33.118	33.262	0	1137	82	0.9369253	0.04952991	0.9369253	379.4192	0	20.05777						156	7	3	NaN	NaN	NaN	0.51407	1	17725	17725		17.97	7.6095	1	12098			15449	1414	8948	9137	12237	12237					0.05099399926325532
LPYVGKELNM	10	Unmodified	_LPYVGKELNM_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.3100918888501	2	582.310092	1162.60563	2.2213	0.0012935	-3.9956	-0.0023267	-1.7743	-0.0010332	582.3081047427546	23.32	0.24107	23.32	23.176	23.417	0	1152	52	0.92775106	0.031209052	0.92775106	376.00467	0	12.64859						261	11	4	NaN	NaN	NaN	0.23201	1	15236	15236		32.778	5.4818	1	33082			15450	2423	8949	9138	12238	12238					0.03083225431169012
LPYVGKELNM	10	Oxidation (M)	_LPYVGKELNM(Oxidation (M))_		LPYVGKELNM(1)		LPYVGKELNM(42)	0	0	1		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3075491999001	2	590.307549	1178.60055	1.2213	0.00072094	-2.5644	-0.0015138	-1.3431	-0.00079282	590.3060253772526	20.261	0.24066	20.246	20.102	20.343	-0.014141	1152	106	0.92775106	0.064288676	0.9262317	375.94482	0	26.051178						343	11	3	NaN	NaN	NaN	0.12997	1	15206	15206		41.839	16.038	1	37551			15451	2423	8949	9139	12239	12239		272			0.018389215685601812
LQALIEEQR	9	Unmodified	_LQALIEEQR_					0	0	0			REV__ENST00000530517.5_1_11:125105009-125201775:+|nuORF	REV__ENST00000530517.5_1_11:125105009-125201775:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.3089377959001	2	550.308938	1098.60332	1.3547	0.00074551	-1.8263	-0.001005	-0.47162	-0.00025953	550.3077104093965	19.276	0.072037	19.276	19.252	19.324	0	1233	49	0.87812483	0.029447913	0.87812483	356.1348	0	11.942963						114	4	3	NaN	NaN	NaN	0.084037	1	12803	12803		38.131	0.89997	1	20380	+		15452	12630	8950	9140	12240	12240					0.05796513017708094
LQALIEEQR	9	Unmodified						0	0	0			REV__ENST00000530517.5_1_11:125105009-125201775:+|nuORF	REV__ENST00000530517.5_1_11:125105009-125201775:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.308938	1098.60332	1.3547	0.00074551	-1.8263	-0.001005	-0.47162	-0.00025953	550.3077104093965	19.276	0.072037	19.276	19.252	19.324	0	1233	49	0.87812483	0.029447913	0.87812483	356.1348		11.942963	-0.0039299	0.00024705	0.00075972	NaN	38.131	114	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20380	+		15453	12630	8950	9140							0.05796513017708094
LQASNVTNKND	11	Unmodified	_LQASNVTNKND_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3018410453001	2	602.301841	1202.58913	0.98898	0.00059566	-2.4191	-0.001457	-1.4301	-0.00086136	602.300175613914	12.412	0.095946	12.412	12.388	12.484	0	1221	31	0.885486	0.018399	0.885486	358.73526	0	7.453949						70	5	2	NaN	NaN	NaN	0.054339	1	16547	16547		66.134	27.095	1	7024.9			15454	2487	8951	9141	12241	12241					-0.004061842012333727
LQASNVTNKND	11	Unmodified	_LQASNVTNKND_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3018410453001	2	602.301841	1202.58913	0.99523	0.00059943	-0.29537	-0.0001779	0.69986	0.00042153	602.3017376475161	12.39	0.14395	12.381	12.333	12.477	-0.0088415	1224	31	0.883646	0.018399	0.88212657	357.98984	0	7.4539185						78	7	2	NaN	NaN	NaN	0.06459	1	15893	15893		63.354	20.359	1	6918.2			15455	2487	8951	9141	12242	12242					-0.004061842012333727
LQASPLQIL	9	Unmodified	_LQASPLQIL_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.8002173068001	2	491.800217	981.585882	1.7854	0.00087807	-3.0002	-0.0014755	-1.2147	-0.00059741	491.7987754800598	22.477	0.1686	22.477	22.429	22.597	0	1329	49	0.81912065	0.029549956	0.81912065	332.695	0	12.002075						207	8	3	NaN	NaN	NaN	0.084037	1	7953	7953		38.131	1.896	1	28300			15456	5643	8952	9142	12243	12243					0.09435217482723601
LQASPLQIL	9	Unmodified	_LQASPLQIL_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.8002173068001	2	491.800217	981.585882	0.77009	0.00037873	-1.7126	-0.00084227	-0.94255	-0.00046354	491.79935155907594	22.5	0.14469	22.486	22.438	22.583	-0.013731	1329	46	0.81912065	0.027704597	0.8176012	332.695	0	11.252533						178	7	3	NaN	NaN	NaN	0.04743	1	7782	7782		48.002	5.0075	1	24894			15457	5643	8952	9142	12244	12244					0.09435217482723601
LQCWDALERTT	11	Unmodified	_LQCWDALERTT_					0	0	0		chr11:88335082-88335640|152|25.22|0.12|7.66|-|1|CTSC,None|1	chr11:88335082-88335640|152|25.22|0.12|7.66|-|1|CTSC,None|1	chr11:88335082-88335640|152|25.22|0.12|7.66|-|1|CTSC,None|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.32171920765	2	668.321719	1334.62889	0.65391	0.00043702	-9.7487	-0.0065153	-9.0948	-0.0060783	668.3144482611201	31.645	0.12066	31.64	31.592	31.712	-0.0044174	1101	55	0.95892316	0.03297907	0.9574037	388.0504	0	13.345734						213	6	4	NaN	NaN	NaN	0.74794	1	18460	18460		4.3102	0.34164	1	24462			15458	121	8953	9143	12245	12245					-0.025043805221912407
LQDPSQHSYYD	11	Unmodified	_LQDPSQHSYYD_					0	0	0		ENSG00000156453|ENST00000287008|PCDH1	ENSG00000156453|ENST00000287008|PCDH1	ENSG00000156453|ENST00000287008|PCDH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.7913061487501	2	676.791306	1351.56806	1.7469	0.0011823	1.8063	0.0012225	3.5532	0.0024048	677.2945476046201	25.322	0.21716	25.322	25.226	25.443	0	1113	73	0.9515937	0.04398626	0.9515937	385.03488	0	17.79776						515	10	6	NaN	NaN	NaN	0.64873	1	19560	19560		14.854	5.108	1	67272			15459	3917	8954	9144	12246	12246					-0.09366194300741881
LQEAYIAKQ	9	Unmodified	_LQEAYIAKQ_					0	0	0		nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2927564154501	2	532.292756	1062.57096	0.65403	0.00034814	-9.1929	-0.0048933	-8.5389	-0.0045452	532.2877962637764	28.942	0.14482	28.933	28.885	29.03	-0.0083485	1248	49	0.8689189	0.029470205	0.86739945	352.54922	0	11.957031						131	7	3	NaN	NaN	NaN	0.33629	1	10989	10989		16.584	1.1215	1	16013			15460	1470	8955	9145	12247	12247					0.04217725614716983
LQEDEEHWG	9	Unmodified	_LQEDEEHWG_					0	0	0		ENSG00000283632|ENST00000413988|EXOC3L2;nc|ENSG00000283632|Q2M3D2|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7410849857	2	571.741085	1141.46762	1.6892	0.00096581	-8.5323	-0.0048783	-6.8431	-0.0039125	572.2364009385541	27.833	0.12065	27.833	27.808	27.929	0	1257	43	0.86339295	0.025789201	0.86339295	349.99716	0	10.454254						100	6	3	NaN	NaN	NaN	0.56671	1	14492	14492		6.8632	1.1691	1	6885.9			15461	6209	8956	9146	12248	12248					-0.09745806563751103
LQELCYNFR	9	Unmodified	_LQELCYNFR_					0	0	0		ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.86221935403324	3	395.862219	1184.56483	1.4727	0.00058298	-6.2997	-0.0024938	-4.827	-0.0019108	396.19286243499687	22.645	0.048241	22.645	22.621	22.67	0	1497	37	0.71537006	0.022299886	0.71537006	434.7956	0	13.55368						76	3	4	NaN	NaN	NaN	0.66822	1	15994	15994		2.1026	0.21245	1	5620.2			15462	6460	8957	9147	12249	12249					-0.020071158884775286
LQELCYNFR	9	Unmodified						0	0	0		ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	395.862219	1184.56483	1.925	0.00076204	-6.2997	-0.0024938	-4.3746	-0.0017318	396.19347514091834	22.669	0.072384	22.655	22.631	22.704	-0.01354	1497	31	0.71537006	0.018583238	0.7138506	434.7956		11.294708	0.0049872	3.6071E-08	-0.00075972	NaN	2.1026	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3495.7			15463	6460	8957	9147							-0.020071158884775286
LQELKDKK	8	Unmodified	_LQELKDKK_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.3031241365	2	501.303124	1000.5917	1.5747	0.00078942	4.4253	0.0022184	6.0001	0.0030078	501.30494647471494	27.615	0.072367	27.615	27.591	27.664	0	1290	46	0.84311575	0.027662694	0.84311575	342.35095	0	11.232574						53	4	2	NaN	NaN	NaN	0.69898	1	8632	8632		19.118	0	1	4731.4	+		15464	10786	8958	9148	12250	12250					0.09142315994370165
LQELKDKK	8	Unmodified						0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.303124	1000.5917	1.5747	0.00078942	4.4253	0.0022184	6.0001	0.0030078	501.30494647471494	27.615	0.072367	27.615	27.591	27.664	0	1290	46	0.84311575	0.027662694	0.84311575	342.35095		11.232574	-0.0068869	0.0014687	-0.0010846	NaN	19.118	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4731.4	+		15465	10786	8958	9148							0.09142315994370165
LQELKDKK	8	Unmodified						0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.303124	1000.5917	1.337	0.00067025	1.5498	0.00077691	2.8868	0.0014472	501.30250620325955	27.639	0.072378	27.629	27.605	27.677	-0.009552	1284	34	0.8468043	0.020285964	0.8452849	343.84872		8.237213	0.0068869	-0.0014143	0.0010846	NaN	19.118	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4824.1	+		15466	10786	8958	9148							0.09142315994370165
LQFAEKFEAT	10	Unmodified	_LQFAEKFEAT_					0	0	0			REV__ENST00000549017.5_1_12:56552185-56553840:+|nuORF	REV__ENST00000549017.5_1_12:56552185-56553840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.30332110175	2	592.303321	1182.59209	0.84837	0.00050249	-2.7932	-0.0016544	-1.9448	-0.0011519	592.3017691074614	22.211	0.12061	22.197	22.125	22.246	-0.013731	1176	64	0.9130621	0.03858155	0.91154265	369.9781	0	15.633453						102	6	2	NaN	NaN	NaN	0.66626	1	15318	15318		10.36	2.0699	1	11435	+		15467	8747	8959	9149	12251	12251					0.008096909235746352
LQFAEKFEAT	10	Unmodified						0	0	0			REV__ENST00000549017.5_1_12:56552185-56553840:+|nuORF	REV__ENST00000549017.5_1_12:56552185-56553840:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.303321	1182.59209	0.84837	0.00050249	-2.7932	-0.0016544	-1.9448	-0.0011519	592.3017691074614	22.211	0.12061	22.197	22.125	22.246	-0.013731	1176	64	0.9130621	0.03858155	0.91154265	369.9781		15.633453	-0.0070855	-0.00017811	-0.0016781	NaN	10.36	102	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11435	+		15468	8747	8959	9149							0.008096909235746352
LQGGPSHL	8	Unmodified	_LQGGPSHL_					0	0	0		ENST00000591924.5_1_18:33234574-33234712:+|nuORF	ENST00000591924.5_1_18:33234574-33234712:+|nuORF	ENST00000591924.5_1_18:33234574-33234712:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	808.4311781966	1	808.431178	807.423902	1.7797	0.0014387	-6.4805	-0.005239	-4.7008	-0.0038003	808.425202755955	33.213	0.072411	33.21	33.162	33.235	-0.0024757	477	37	1.3357477	0.021496534	1.3342283	272.07706	0	4.3786316						51	4	2	NaN	NaN	NaN	0.84455	1	4758	4758		2.7852	0	1	3331.8			15469	7734	8960	9150	12252	12252					0.01248673520410648
LQGSTTGS	8	Unmodified	_LQGSTTGS_					0	0	0			REV__ENST00000488171.5_1_1:207495110-207510876:+|nuORF	REV__ENST00000488171.5_1_1:207495110-207510876:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.3628238599001	1	750.362824	749.355547	2.2408	0.0016814	4.7505	0.0035646	6.9914	0.0052461	750.3665904644522	23.369	0.31344	23.369	23.32	23.634	0	591	160	1.26753	0.09548712	1.26753	258.51617	0	19.474838						525	14	2	NaN	NaN	NaN	0.67593	1	4041	4041		20.555	0	1	275410	+		15470	12438	8961	9151	12253	12253					-0.02915615850076847
LQGSTTGS	8	Unmodified						0	0	0			REV__ENST00000488171.5_1_1:207495110-207510876:+|nuORF	REV__ENST00000488171.5_1_1:207495110-207510876:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	750.362824	749.355547	2.2408	0.0016814	4.7505	0.0035646	6.9914	0.0052461	750.3665904644522	23.369	0.31344	23.369	23.32	23.634	0	591	160	1.26753	0.09548712	1.26753	258.51617		19.474838	-0.0051793	-0.00019502	-0.00013966	NaN	20.555	525	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275410	+		15471	12438	8961	9151							-0.02915615850076847
LQGVMAGGG	9	Unmodified	_LQGVMAGGG_					0	0	0			REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.3923498493002	1	789.39235	788.385073	1.5683	0.001238	0.02479	1.9569E-05	1.5931	0.0012576	789.3921658565827	30.341	0.048267	30.335	30.311	30.359	-0.0064106	513	55	1.3142352	0.032289624	1.3127158	267.80325	0	6.5796814						80	3	2	NaN	NaN	NaN	0.27442	1	4515	4515		20.555	2.7751	1	5424.3	+		15472	12821	8962	9152	12254	12254					-0.017583751055894936
LQGVMAGGG	9	Unmodified						0	0	0			REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.39235	788.385073	2.0685	0.0016328	-0.50217	-0.00039641	1.5663	0.0012364	789.3923922582906	30.342	0.04826	30.342	30.318	30.366	0	522	34	1.3088527	0.01973772	1.3088527	266.70645		4.0219727	0.0036985	-0.00021448	-0.0019315	NaN	20.555	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2389.5	+		15473	12821	8962	9152							-0.017583751055894936
LQGVMAGGG	9	Unmodified						0	0	0			REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	REV__ENST00000570451.5_2_17:1733285-1746124:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.39235	788.385073	1.5683	0.001238	0.02479	1.9569E-05	1.5931	0.0012576	789.3921658565827	30.341	0.048267	30.335	30.311	30.359	-0.0064106	513	55	1.3142352	0.032289624	1.3127158	267.80325		6.5796814	-0.0036985	0.0002015	0.0019315	NaN	20.555	80	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5424.3	+		15474	12821	8962	9152							-0.017583751055894936
LQHAAGKG	8	Unmodified	_LQHAAGKG_					0	0	0		ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.4315125476002	1	781.431513	780.424236	2.3161	0.0018098	2.7779	0.0021708	5.094	0.0039806	781.4349770364795	27.977	0.096531	27.968	27.919	28.016	-0.0089798	498	31	1.3232021	0.01792717	1.3216827	269.6775	0	3.653656						41	5	2	NaN	NaN	NaN	0.8439	1	4417	4417		3.1533	0	1	2444.8			15475	6952	8963	9153	12255	12255					0.02524093240288039
LQHGGNCE	8	Unmodified	_LQHGGNCE_					0	0	0		ENST00000282120.6_1_2:85545669-85545816:-|nuORF	ENST00000282120.6_1_2:85545669-85545816:-|nuORF	ENST00000282120.6_1_2:85545669-85545816:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.18215172105	2	429.182152	856.349751	3.0975	0.0013294	-12.035	-0.0051654	-8.938	-0.003836	429.17591414581193	34.13	0.048306	34.129	34.129	34.177	-0.0012474	1401	19	0.77473325	0.011112511	0.7732138	315.30164	0	4.522583						20	3	2	NaN	NaN	NaN	0.83913	1	5342	5342		3.9685	1.1833	1	921.81			15476	6364	8964	9154	12256	12256					-0.08417037633410018
LQILLVTT	8	Unmodified	_LQILLVTT_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5764454503	1	900.576445	899.569169	0.17611	0.0001586	8.4513	0.0076111	8.6274	0.0077697	900.5838595459883	53.264	0.047943	53.264	53.24	53.288	-0.00053787	399	1168	1.382264	0.7009883	1.3807446	281.06903	0	142.5387						1983	3	2	NaN	NaN	NaN	0.84727	1	5962	5962		1.2418	0.16982	1	218010	+		15477	9053	8965	9155	12257	12257					0.11536716596742735
LQISAEVI	8	Unmodified	_LQISAEVI_					0	0	0			REV__ENSG00000152990|ENST00000334304|ADGRA3	REV__ENSG00000152990|ENST00000334304|ADGRA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5087598156	1	872.50876	871.501483	1.4457	0.0012614	0.069815	6.0915E-05	1.5155	0.0013223	872.509569667345	27.615	0.096479	27.615	27.591	27.688	0	387	61	1.389409	0.03571713	1.389409	282.65897	0	7.2662354						160	5	3	NaN	NaN	NaN	0.49126	1	5685	5685		31.561	2.6655	1	20534	+		15478	10064	8966	9156	12258	12258					0.060592666659431416
LQKDSDEVTI	10	Unmodified	_LQKDSDEVTI_					0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2956930349001	2	574.295693	1146.57683	2.7354	0.0015709	-10.226	-0.005873	-7.4911	-0.0043021	574.2897283697185	16.179	0.50343	16.166	16.07	16.574	-0.012993	1236	91	0.876284	0.05519694	0.8747646	355.204	0	22.374207						1340	22	5	NaN	NaN	NaN	0.047882	1	14199	14199		53.14	0.51626	1	1412700	+		15479	13154	8967	9157	12259	12259					0.009407793357240735
LQLADFGLST	10	Unmodified	_LQLADFGLST_					0	0	0		ENST00000557624.1_1_14:24807626-24807821:-|nuORF	ENST00000557624.1_1_14:24807626-24807821:-|nuORF	ENST00000557624.1_1_14:24807626-24807821:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.78476420785	2	532.784764	1063.55498	1.1613	0.00061875	-1.7122	-0.00091223	-0.55085	-0.00029348	532.783988126772	34.202	0.048275	34.201	34.177	34.225	-0.0012474	1302	28	0.8357362	0.016608357	0.8342168	339.08188	0	6.738495						49	3	2	NaN	NaN	NaN	0.77024	1	11023	11023		2.8895	0	1	4154.5			15480	7578	8968	9158	12260	12260					0.025740193777892273
LQLEAAGVSL	10	Unmodified	_LQLEAAGVSL_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7873068968	2	500.787307	999.560061	2.0915	0.0010474	-2.4028	-0.0012033	-0.31135	-0.00015592	500.7863018357474	17.861	0.095903	17.861	17.837	17.933	0	1293	88	0.84127116	0.05347544	0.84127116	341.60678	0	21.714233						216	5	2	NaN	NaN	NaN	0.31086	1	8581	8581		27.296	0	1	34908	+		15481	11249	8969	9159	12261	12261					0.060263232404167866
LQLGALAG	8	Unmodified	_LQLGALAG_					0	0	0		COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.4457656283001	1	742.445766	741.438489	1.7259	0.0012814	0.80075	0.00059451	2.5267	0.0018759	742.4462153651217	22.838	0.072247	22.824	22.8	22.872	-0.01354	522	46	1.3088527	0.026915193	1.3073332	266.9953	0	5.4904785						78	4	2	NaN	NaN	NaN	0.23389	1	3862	3862		47.321	0	1	9351.7			15482	173	8970	9160	12262	12262					0.05742745668578664
LQLQGSAWF	9	Unmodified	_LQLQGSAWF_					0	0	0			REV__ENST00000301585.9_1_17:73017109-73017202:+|nuORF	REV__ENST00000301585.9_1_17:73017109-73017202:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.27436669705	2	525.274367	1048.53418	1.6628	0.00087345	-0.83387	-0.00043801	0.82898	0.00043544	525.2746382459367	28.098	0.16895	28.098	28.05	28.219	0	1257	94	0.86339295	0.05715722	0.86339295	350.36713	0	23.19455						285	8	4	NaN	NaN	NaN	0.47587	1	10569	10569		10.605	2.3147	1	42237	+		15483	11657	8971	9161	12263	12263					0.01185473788791569
LQLRANMLM	9	Unmodified	_LQLRANMLM_					0	0	0			REV__ENSG00000107020|ENST00000223864|PLGRKT	REV__ENSG00000107020|ENST00000223864|PLGRKT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2990042738	2	545.299004	1088.58346	1.9338	0.0010545	-1.0712	-0.00058411	0.86263	0.00047039	545.298317394983	23.392	0.072386	23.379	23.331	23.403	-0.013296	1251	46	0.8670771	0.027629793	0.8655577	351.69434	0	11.206879						82	4	3	NaN	NaN	NaN	0.56671	1	12031	12031		6.8632	0	1	9794.2	+		15484	9002	8972	9162	12264	12264					0.04270722481737721
LQLRANMLM	9	Unmodified						0	0	0			REV__ENSG00000107020|ENST00000223864|PLGRKT	REV__ENSG00000107020|ENST00000223864|PLGRKT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.299004	1088.58346	1.9338	0.0010545	-1.0712	-0.00058411	0.86263	0.00047039	545.298317394983	23.392	0.072386	23.379	23.331	23.403	-0.013296	1251	46	0.8670771	0.027629793	0.8655577	351.69434		11.206879	0.017218	0.00094854	-0.00075972	NaN	6.8632	82	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9794.2	+		15485	9002	8972	9162							0.04270722481737721
LQNCKAWR	8	Unmodified	_LQNCKAWR_					0	0	0			REV__ENSG00000126603|ENST00000433375|GLIS2	REV__ENSG00000126603|ENST00000433375|GLIS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.76618591169995	2	509.766186	1017.51782	1.1791	0.00060106	-1.1902	-0.00060672	-0.011088	-5.6524E-06	509.7652601270891	24.26	0.12068	24.248	24.175	24.296	-0.012749	1284	67	0.8468043	0.040587306	0.8452849	343.77115	0	16.476929						193	6	3	NaN	NaN	NaN	0.80692	1	9093	9093		8.2903	0.70269	1	42856	+		15486	9420	8973	9163	12265	12265					0.009760693510429519
LQNCKAWR	8	Unmodified						0	0	0			REV__ENSG00000126603|ENST00000433375|GLIS2	REV__ENSG00000126603|ENST00000433375|GLIS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.766186	1017.51782	1.6044	0.00081785	-1.9317	-0.00098472	-0.32735	-0.00016687	509.7654400146482	24.261	0.16895	24.261	24.164	24.333	0	1287	70	0.8449601	0.042429864	0.8449601	343.0225		17.224945	0.0065195	-0.0002932	-0.00016237	NaN	8.2903	240	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51221	+		15487	9420	8973	9163							0.009760693510429519
LQNCKAWR	8	Unmodified						0	0	0			REV__ENSG00000126603|ENST00000433375|GLIS2	REV__ENSG00000126603|ENST00000433375|GLIS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.766186	1017.51782	1.1791	0.00060106	-1.1902	-0.00060672	-0.011088	-5.6524E-06	509.7652601270891	24.26	0.12068	24.248	24.175	24.296	-0.012749	1284	67	0.8468043	0.040587306	0.8452849	343.77115		16.476929	-0.0065195	0.00046281	0.00016237	NaN	8.2903	193	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42856	+		15488	9420	8973	9163							0.009760693510429519
LQNHMLDLR	9	Unmodified	_LQNHMLDLR_					0	0	0		nc|ENSG00000084734|Q14397|GCKR;ENSG00000084734|ENST00000264717|GCKR	nc|ENSG00000084734|Q14397|GCKR	nc|ENSG00000084734|Q14397|GCKR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.5378471715333	3	380.537847	1138.59171	1.1719	0.00044594	-5.3296	-0.0020281	-4.1577	-0.0015822	380.5362837635235	13.012	0.21622	13.012	12.892	13.108	0	1524	46	0.698637	0.027900577	0.698637	424.82236	0	16.965576						196	10	2	NaN	NaN	NaN	0.56671	1	14402	14402		3.9281	0	1	31635			15489	964	8974	9164	12266	12266					0.02795992722712981
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.80583400095	2	557.805834	1113.59712	1.6726	0.00093301	-8.0529	-0.0044919	-6.3803	-0.0035589	557.8013783585968	28.581	0.19305	28.581	28.532	28.725	0	1239	85	0.87444305	0.05151713	0.87444305	354.58246	0	20.889954						400	9	4	NaN	NaN	NaN	0.04947	1	13437	13437		47.136	19.275	1	115540			15490	5923	8975	9165	12267	12267					0.04486039576818257
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.80583400095	2	557.805834	1113.59712	1.2879	0.00071838	-10.675	-0.0059544	-9.3868	-0.005236	557.7996388014277	28.604	0.19303	28.596	28.523	28.716	-0.0083504	1236	76	0.876284	0.045999944	0.8747646	355.32898	0	18.65274						386	9	4	NaN	NaN	NaN	0.20577	1	13053	13053		24.961	7.162	1	109350			15491	5923	8975	9165	12268	12268					0.04486039576818257
LQNIMGML	8	Unmodified	_LQNIMGML_					0	0	0			REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.4739709887002	1	919.473971	918.466695	1.5983	0.0014696	2.4265	0.0022311	4.0247	0.0037006	919.4756914970742	30.294	0.19305	30.294	30.222	30.415	0	306	55	1.4375578	0.032063365	1.4375578	292.22183	0	6.5177307						145	9	2	NaN	NaN	NaN	0.84692	1	6388	6388		1.4396	0	1	10252	+		15492	9592	8976	9166	12269	12269					0.004199842619982519
LQNIMGML	8	Unmodified						0	0	0			REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	919.473971	918.466695	1.5983	0.0014696	2.4265	0.0022311	4.0247	0.0037006	919.4756914970742	30.294	0.19305	30.294	30.222	30.415	0	306	55	1.4375578	0.032063365	1.4375578	292.22183		6.5177307	0.0036873	-0.00021349	-0.0001306	NaN	1.4396	145	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10252	+		15493	9592	8976	9166							0.004199842619982519
LQNIMGML	8	Unmodified						0	0	0			REV__nc|ENSG00000134532|P35711-4|SOX5	REV__nc|ENSG00000134532|P35711-4|SOX5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	919.473971	918.466695	1.0923	0.0010043	3.0226	0.0027792	4.1149	0.0037835	919.4771062772796	30.293	0.193	30.287	30.214	30.407	-0.0064106	303	49	1.4393384	0.028491735	1.437819	292.5838		5.791687	-0.0036873	0.00033467	0.0001306	NaN	1.4396	136	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9170.6	+		15494	9592	8976	9166							0.004199842619982519
LQNSLGGSAKM	11	Unmodified	_LQNSLGGSAKM_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2871481088	2	553.287148	1104.55974	1.328	0.00073476	-1.5574	-0.00086169	-0.22941	-0.00012693	553.2858088154971	28.435	0.048283	28.426	28.402	28.45	-0.0089798	1215	67	0.8891654	0.040473342	0.88764596	360.58835	0	16.413391						77	3	2	NaN	NaN	NaN	0.57257	1	12698	12698		15.822	1.7803	1	6599.8			15495	6056	8977	9167	12270	12270					0.011645802489056223
LQNTFGQLQ	9	Unmodified	_LQNTFGQLQ_					0	0	0		ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.542185209	1	1048.54219	1047.53491	2.1097	0.0022121	-0.41352	-0.00043359	1.6962	0.0017785	1048.5418396025084	23.609	0.096418	23.596	23.572	23.669	-0.013048	201	49	1.4997677	0.028388977	1.4982482	304.31238	0	5.760315						86	5	2	NaN	NaN	NaN	0.38313	1	10317	10317		14.425	0.96197	1	8246.3			15496	5533	8978	9168	12271	12271					0.013042684378660852
LQPDAPLWVRF	11	Unmodified	_LQPDAPLWVRF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3693297147499	2	671.36933	1340.72411	1.235	0.00082912	-2.7386	-0.0018386	-1.5037	-0.0010095	671.3670007464318	29.329	0.16889	29.329	29.28	29.449	0	1092	70	0.9644182	0.042114913	0.9644182	390.2559	0	17.041962						207	8	3	NaN	NaN	NaN	0.29849	1	19424	19424		25.681	15.438	1	29485			15497	4564	8979	9169	12272	12272					0.06737340731160657
LQPDAPLWVRF	11	Unmodified	_LQPDAPLWVRF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3693297147499	2	671.36933	1340.72411	0.95626	0.000642	-1.7781	-0.0011938	-0.82184	-0.00055176	671.3679878740688	29.352	0.14477	29.344	29.296	29.441	-0.0077209	1092	55	0.9644182	0.032964826	0.96289873	390.2559	0	13.339355						229	7	3	NaN	NaN	NaN	0.59348	1	18558	18558		14.45	8.0196	1	31905			15498	4564	8979	9169	12273	12273					0.06737340731160657
LQPERYELW	9	Unmodified	_LQPERYELW_					0	0	0		ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.316762828	2	617.316763	1232.61897	1.1104	0.00068546	-4.783	-0.0029526	-3.6726	-0.0022671	617.3139396885714	24.237	0.2896	24.237	24.14	24.43	0	1155	121	0.92591566	0.073437154	0.92591566	375.01077	0	29.743256						482	13	4	NaN	NaN	NaN	0.21451	1	17342	17342		24.4	3.8869	1	141180			15499	2543	8980	9170	12274	12274					0.011967995347504257
LQPERYELW	9	Unmodified	_LQPERYELW_					0	0	0		ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.316762828	2	617.316763	1232.61897	1.1666	0.00072014	-8.1136	-0.0050086	-6.947	-0.0042885	617.3117117091472	24.26	0.16895	24.248	24.224	24.393	-0.012749	1155	94	0.92591566	0.056886137	0.9243962	375.0108	0	23.039795						545	8	5	NaN	NaN	NaN	0.059222	1	16615	16615		42.995	8.556	1	167890			15500	2543	8980	9170	12275	12275					0.011967995347504257
LQPERYELW	9	Unmodified						0	0	0		ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.316763	1232.61897	1.3197	0.00081465	-11.28	-0.0069631	-9.96	-0.0061485	617.311373594131	23.995	0.072388	23.982	23.91	23.982	-0.013048	1167	82	0.91857195	0.04954064	0.9170525	372.0365		20.064758	-0.12731	-0.0061973	-0.0044316	NaN	24.4	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6054.6			15501	2543	8980	9170							0.011967995347504257
LQPFHHVHA	9	Unmodified	_LQPFHHVHA_					0	0	0			REV__ENST00000525040.5_1_11:9801967-9809483:-|nuORF	REV__ENST00000525040.5_1_11:9801967-9809483:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2856000853501	2	543.2856	1084.55665	1.105	0.0006003	6.0514	0.0032877	7.1564	0.003888	543.2889723068638	27.494	0.16891	27.484	27.412	27.581	-0.009552	1206	97	0.894683	0.05882591	0.89316356	362.90833	0	23.86142						192	8	2	NaN	NaN	NaN	0.65818	1	11859	11859		2.7852	0.18574	1	25253	+		15502	12617	8981	9171	12276	12276					0.017751179770812087
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8345914403999	2	623.834591	1245.65463	1.7337	0.0010815	-2.3855	-0.0014881	-0.65178	-0.0004066	623.8330689683306	28.291	0.14477	28.291	28.243	28.388	0	1131	58	0.94059354	0.034854412	0.94059354	380.9114	0	14.114929						199	7	4	NaN	NaN	NaN	0.13999	1	17660	17660		41.785	24.926	1	49075			15503	1715	8982	9172	12277	12277					0.041628817823720965
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8345914403999	2	623.834591	1245.65463	0.7209	0.00044973	-3.3137	-0.0020672	-2.5928	-0.0016175	623.8330667936457	28.314	0.12063	28.305	28.281	28.402	-0.0089779	1131	46	0.94059354	0.027510703	0.93907416	380.9114	0	11.140991						217	6	4	NaN	NaN	NaN	0.25424	1	16919	16919		30.61	15.756	1	48739			15504	1715	8982	9172	12278	12278					0.041628817823720965
LQPHRRWFYRD	11	Unmodified	_LQPHRRWFYRD_					0	0	0			REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.410383175	2	787.410383	1572.80621	2.2826	0.0017973	0.90135	0.00070974	3.184	0.0025071	787.4110430636921	18.314	0.096066	18.3	18.276	18.372	-0.01395	960	43	1.0448081	0.02551806	1.0432887	422.1489	0	10.310455						170	5	4	NaN	NaN	NaN	0.76304	1	19710	19710		3.2116	0	1	36799	+		15505	9260	8983	9173	12279	12279					0.04272255862815655
LQPSFELLI	9	Unmodified	_LQPSFELLI_					0	0	0			REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.3078751634001	2	530.307875	1058.6012	1.4558	0.000772	-1.4394	-0.0007633	0.016399	8.6968E-06	530.3068988950821	34.734	0.12058	34.734	34.71	34.831	0	1248	49	0.8689189	0.029466987	0.8689189	352.5661	0	11.956329						165	6	3	NaN	NaN	NaN	0.12328	1	11042	11042		32.453	1.8426	1	20013	+		15506	11839	8984	9174	12280	12280					0.07424084279909948
LQPSFELLI	9	Unmodified						0	0	0			REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.307875	1058.6012	1.4558	0.000772	-1.4394	-0.0007633	0.016399	8.6968E-06	530.3068988950821	34.734	0.12058	34.734	34.71	34.831	0	1248	49	0.8689189	0.029466987	0.8689189	352.5661		11.956329	-0.011011	0.00012668	0.00075972	NaN	32.453	165	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20013	+		15507	11839	8984	9174							0.07424084279909948
LQPVAKTFF	9	Unmodified	_LQPVAKTFF_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5982435249	1	1050.59824	1049.59097	2.0094	0.0021111	-4.8215	-0.0050654	-2.8121	-0.0029544	1050.5904051709267	35.988	0.072388	35.988	35.988	36.061	0	129	46	1.5422925	0.026545644	1.5422925	312.93298	0	5.386139						54	4	2	NaN	NaN	NaN	0.41766	1	10633	10633		13.003	0.41496	1	3658.9	+		15508	11383	8985	9175	12281	12281					0.06815521345333764
LQPVAKTFF	9	Unmodified						0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1050.59824	1049.59097	2.0094	0.0021111	-4.8215	-0.0050654	-2.8121	-0.0029544	1050.5904051709267	35.988	0.072388	35.988	35.988	36.061	0	129	46	1.5422925	0.026545644	1.5422925	312.93298		5.386139	0	0	0	NaN	13.003	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3658.9	+		15509	11383	8985	9175							0.06815521345333764
LQPVPPTA	8	Unmodified	_LQPVPPTA_					0	0	0			REV__ENST00000554708.1_1_14:23547358-23548244:-|nuORF	REV__ENST00000554708.1_1_14:23547358-23548244:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	822.4719803788	1	822.47198	821.464704	1.5488	0.0012738	-3.3806	-0.0027805	-1.8319	-0.0015067	822.4699257677989	27.566	0.09656	27.557	27.508	27.605	-0.009552	483	43	1.3321642	0.025087357	1.3306447	271.26953	0	5.108551						68	5	2	NaN	NaN	NaN	0.67593	1	4927	4927		20.555	2.7751	1	5260.8	+		15510	8833	8986	9176	12282	12282					0.046830148400431426
LQPVPPTA	8	Unmodified						0	0	0			REV__ENST00000554708.1_1_14:23547358-23548244:-|nuORF	REV__ENST00000554708.1_1_14:23547358-23548244:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.47198	821.464704	1.5488	0.0012738	-3.3806	-0.0027805	-1.8319	-0.0015067	822.4699257677989	27.566	0.09656	27.557	27.508	27.605	-0.009552	483	43	1.3321642	0.025087357	1.3306447	271.26953		5.108551	0.0068991	-0.0010929	0.0010324	NaN	20.555	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5260.8	+		15511	8833	8986	9176							0.046830148400431426
LQQFFSNMLE	10	Unmodified	_LQQFFSNMLE_					0	0	0		ENST00000512413.1_1_5:115357396-115361812:+|nuORF;ENSG00000172901|ENST00000357872|LVRN	ENST00000512413.1_1_5:115357396-115361812:+|nuORF	ENST00000512413.1_1_5:115357396-115361812:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.8026309975002	2	628.802631	1255.59071	0.46745	0.00029393	4.1193	0.0025902	4.5868	0.0028842	628.8047316529156	31.548	0.16896	31.544	31.471	31.64	-0.0044174	1179	55	0.9112251	0.03306091	0.90970564	368.98602	0	13.387482						199	8	3	NaN	NaN	NaN	0.41164	1	17139	17139		23.118	0.031776	1	22873			15512	4861	8987	9177	12283	12283					-0.026862664368081823
LQQFFSNMLE	10	Unmodified						0	0	0		ENST00000512413.1_1_5:115357396-115361812:+|nuORF;ENSG00000172901|ENST00000357872|LVRN	ENST00000512413.1_1_5:115357396-115361812:+|nuORF	ENST00000512413.1_1_5:115357396-115361812:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	628.802631	1255.59071	0.8834	0.00055548	3.5688	0.0022441	4.4522	0.0027996	628.8046422411863	31.549	0.24139	31.549	31.428	31.67	0	1182	49	0.9093879	0.029393852	0.9093879	368.2421		11.902588	0.002736	-0.00029528	-0.00015889	NaN	23.118	271	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27065			15513	4861	8987	9177							-0.026862664368081823
LQQIIVSL	8	Unmodified	_LQQIIVSL_					0	0	0		ENST00000426228.1_1_3:20082197-20142489:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B	ENST00000426228.1_1_3:20082197-20142489:+|nuORF	ENST00000426228.1_1_3:20082197-20142489:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.5716944234001	1	913.571694	912.564418	1.3857	0.0012659	1.1821	0.0010799	2.5678	0.0023458	913.5722237165926	31.307	0.048285	31.302	31.277	31.326	-0.0050716	273	43	1.4571344	0.024901152	1.4556149	296.22958	0	5.0622864						69	3	2	NaN	NaN	NaN	0.35353	1	6166	6166		38.918	2.3314	1	7252.8			15514	1945	8988	9178	12284	12284					0.10463832454001931
LQQIIVSL	8	Unmodified						0	0	0		ENST00000426228.1_1_3:20082197-20142489:+|nuORF;ENSG00000114166|ENST00000263754|KAT2B	ENST00000426228.1_1_3:20082197-20142489:+|nuORF	ENST00000426228.1_1_3:20082197-20142489:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	913.571694	912.564418	0.92561	0.00084561	0.10298	9.4081E-05	1.0286	0.0009397	913.5721147034963	31.308	0.072392	31.308	31.284	31.356	0	276	46	1.4553556	0.026684046	1.4553556	295.86798		5.4247437	0.0030425	-0.00041061	-0.00012965	NaN	38.918	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7073.1			15515	1945	8988	9178							0.10463832454001931
LQQNIYENFMR	11	Unmodified	_LQQNIYENFMR_					0	0	0		TIAM2|p.R455Q|1|0.05|ENSG00000146426|chr6:155137346-155137346|G/A|missense_variant	TIAM2|p.R455Q|1|0.05|ENSG00000146426|chr6:155137346-155137346|G/A|missense_variant	TIAM2|p.R455Q|1|0.05|ENSG00000146426|chr6:155137346-155137346|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.90648771636654	3	485.906488	1454.69763	1.8217	0.00088516	1.6216	0.00078793	3.4432	0.0016731	485.90655646414183	22.429	0.12037	22.429	22.38	22.501	0	1359	73	0.8006399	0.044401884	0.8006399	485.58163	0	26.929352						159	6	2	NaN	NaN	NaN	0.76937	1	20400	20400		0.70822	0.37371	1	15669			15516	13716	8989	9179	12285	12285					-0.011527162224865606
LQQPAVSLSF	10	Unmodified	_LQQPAVSLSF_					0	0	0		ENST00000474550.5_1_2:101604480-101612041:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2	ENST00000474550.5_1_2:101604480-101612041:+|nuORF	ENST00000474550.5_1_2:101604480-101612041:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.30058144755	2	545.300581	1088.58661	1.7425	0.00095018	-5.1435	-0.0028048	-3.401	-0.0018546	545.2987167830547	23.345	0.072342	23.345	23.296	23.369	0	1251	61	0.8670771	0.036825776	0.8670771	351.69434	0	14.936859						102	4	3	NaN	NaN	NaN	0.68732	1	12335	12335		8.9191	0.64155	1	13030			15517	4732	8990	9180	12286	12286					0.0458601213174461
LQQYSPEIL	9	Unmodified	_LQQYSPEIL_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7925892399501	2	545.792589	1089.57063	1.5608	0.00085186	4.898	0.0026733	6.4587	0.0035251	545.795636501777	22.934	0.072382	22.921	22.896	22.969	-0.01354	1254	70	0.8652351	0.04235196	0.86371565	350.9432	0	17.178131						92	4	2	NaN	NaN	NaN	0.31737	1	12076	12076		17.799	2.3363	1	11453			15518	1776	8991	9181	12287	12287					0.029423058948623293
LQRWFFLPRRA	11	Unmodified	_LQRWFFLPRRA_					0	0	0		nc|ENSG00000171302|Q8WVQ1-3|CANT1;ENSG00000171302|ENST00000392446|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.28948368943327	3	497.289484	1488.84662	1.6118	0.00080153	5.7941	0.0028814	7.4059	0.0036829	497.2927657539879	14.357	0.096081	14.357	14.285	14.381	0	1317	40	0.8265074	0.024005413	0.8265074	501.16183	0	14.556						60	5	2	NaN	NaN	NaN	0.76975	1	20544	20544		2.0359	0.80691	1	6388.4			15519	4777	8992	9182	12288	12288					0.1217522225324501
LQRYQTFLQL	10	Unmodified	_LQRYQTFLQL_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT;ZWINT|p.K205N|1|0.13|ENSG00000122952|chr10:56358813-56358813|C/G|missense_variant	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3667870258	2	655.366787	1308.71902	0.68906	0.00045159	2.9356	0.0019239	3.6247	0.0023755	655.367730993648	30.655	0.12066	30.649	30.601	30.722	-0.0057545	1101	49	0.95892316	0.029314697	0.9574037	388.1291	0	11.865265						185	6	3	NaN	NaN	NaN	0.31086	1	18079	18079		27.296	1.6148	1	32911			15520	2348	8993	9183	12289	12289					0.07701036868547817
LQRYQTFLQL	10	Unmodified						0	0	0		ENSG00000122952|ENST00000373944|ZWINT;ZWINT|p.K205N|1|0.13|ENSG00000122952|chr10:56358813-56358813|C/G|missense_variant	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	655.366787	1308.71902	0.86771	0.00056867	2.7999	0.0018349	3.6676	0.0024036	655.3676777523212	30.656	0.26549	30.656	30.511	30.777	0	1104	43	0.9570911	0.025650322	0.9570911	387.38757		10.382111	0.0034033	-9.095E-05	-0.00015632	NaN	27.296	230	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34002			15521	2348	8993	9183							0.07701036868547817
LQSFQNFAK	9	Unmodified	_LQSFQNFAK_					0	0	0			REV__ENSG00000196081|ENST00000418100|ZNF724	REV__ENSG00000196081|ENST00000418100|ZNF724	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.78509855885	2	541.785099	1081.55564	1.5733	0.00085241	-8.102	-0.0043896	-6.5287	-0.0035371	541.7801754404785	23.875	0.048227	23.875	23.851	23.899	0	1227	52	0.88180584	0.031290054	0.88180584	357.6975	0	12.692566						95	3	3	NaN	NaN	NaN	0.33202	1	12052	12052		16.858	2.4333	1	14601	+		15522	11086	8994	9184	12290	12290					0.018128588175159166
LQSFQNFAK	9	Unmodified						0	0	0			REV__ENSG00000196081|ENST00000418100|ZNF724	REV__ENSG00000196081|ENST00000418100|ZNF724	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.785099	1081.55564	1.5733	0.00085241	-8.102	-0.0043896	-6.5287	-0.0035371	541.7801754404785	23.875	0.048227	23.875	23.851	23.899	0	1227	52	0.88180584	0.031290054	0.88180584	357.6975		12.692566	0.17535	0.0021116	0.014573	NaN	16.858	95	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14601	+		15523	11086	8994	9184							0.018128588175159166
LQSFQNFAK	9	Unmodified						0	0	0			REV__ENSG00000196081|ENST00000418100|ZNF724	REV__ENSG00000196081|ENST00000418100|ZNF724	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.785099	1081.55564	2.1096	0.0011429	-12.539	-0.0067933	-10.429	-0.0056504	541.7783806971526	23.537	0.096426	23.524	23.5	23.596	-0.01305	1272	37	0.854179	0.022119343	0.8526596	346.49094		8.972534	-0.17535	-0.0026959	-0.014573	NaN	16.858	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6009.3	+		15524	11086	8994	9184							0.018128588175159166
LQSGDWVF	8	Unmodified	_LQSGDWVF_					0	0	0		ENST00000233055.8_1_2:224743382-224743445:-|nuORF	ENST00000233055.8_1_2:224743382-224743445:-|nuORF	ENST00000233055.8_1_2:224743382-224743445:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.23216753135	2	476.232168	950.449782	1.7501	0.00083344	-5.8248	-0.002774	-4.0748	-0.0019405	476.22969206719694	16.494	0.2637	16.494	16.398	16.662	0	1335	58	0.8154261	0.035111487	0.8154261	331.34433	0	14.267395						312	12	3	NaN	NaN	NaN	0.67593	1	7093	7093		20.555	2.322	1	70681			15525	6252	8995	9185	12291	12291					-0.02742477027948098
LQSGDWVF	8	Unmodified						0	0	0		ENST00000233055.8_1_2:224743382-224743445:-|nuORF	ENST00000233055.8_1_2:224743382-224743445:-|nuORF	ENST00000233055.8_1_2:224743382-224743445:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	476.232168	950.449782	1.4266	0.0006794	-4.1421	-0.0019726	-2.7155	-0.0012932	476.23027422633896	16.683	0.095856	16.669	16.645	16.741	-0.013294	1338	58	0.81357855	0.035119116	0.8120591	330.59357		14.270477	0.087743	0.0011779	-0.0016835	NaN	20.555	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9928			15526	6252	8995	9185							-0.02742477027948098
LQSHTEYII	9	Unmodified	_LQSHTEYII_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2902137265	2	552.290214	1102.56587	1.7786	0.00098229	3.4725	0.0019178	5.2511	0.0029001	552.2908330710883	23.392	0.12066	23.379	23.331	23.451	-0.013296	1227	61	0.88180584	0.036813855	0.8802864	357.61172	0	14.929657						156	5	3	NaN	NaN	NaN	0.2961	1	12613	12613		19.164	0	1	29182			15527	4611	8996	9186	12292	12292					0.018694217520987877
LQSKWRFAK	9	Unmodified	_LQSKWRFAK_					0	0	0			REV__nc|ENSG00000176024|Q6PF04-2|ZNF613	REV__nc|ENSG00000176024|Q6PF04-2|ZNF613	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.3378326211	2	582.337833	1162.66111	2.5447	0.0014819	6.2737	0.0036534	8.8184	0.0051353	582.3420878730622	18.484	0.11984	18.484	18.412	18.532	0	1206	34	0.894683	0.020229042	0.894683	362.6024	0	8.198517						69	6	2	NaN	NaN	NaN	0.54912	1	15239	15239		4.9097	0	1	5119.4	+		15528	10739	8997	9187	12293	12293					0.08628819733780801
LQSLMEAA	8	Unmodified	_LQSLMEAA_					0	0	0			REV__ENSG00000089289|ENST00000356413|IGBP1	REV__ENSG00000089289|ENST00000356413|IGBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	862.4338803129999	1	862.43388	861.426604	1.9355	0.0016692	-10.784	-0.0093005	-8.8486	-0.0076313	862.4245459406999	55.124	0.048161	55.124	55.076	55.124	0	339	109	1.4179583	0.06422925	1.4179583	288.51947	0	13.069061						114	3	2	NaN	NaN	NaN	0.80071	1	5548	5548		9.1232	0	1	16623	+		15529	8717	8998	9188	12294	12294					-0.009652391369399993
LQSQAIKFV	9	Unmodified	_LQSQAIKFV_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.30566682545	2	517.305667	1032.59678	1.0031	0.00051892	-8.7123	-0.0045069	-7.7092	-0.003988	517.3018929324467	35.119	0.12068	35.119	35.07	35.191	-4.5776E-05	1260	49	0.8615505	0.029476583	0.8600311	349.68945	0	11.96405						110	6	2	NaN	NaN	NaN	0.47587	1	9696	9696		10.605	2.3147	1	10833			15530	3459	8999	9189	12295	12295					0.08178619856971636
LQSQAIKFV	9	Unmodified						0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.305667	1032.59678	0.83741	0.0004332	-10.517	-0.0054405	-9.6796	-0.0050073	517.2997596025011	35.12	0.048302	35.12	35.12	35.168	0	1266	43	0.85786515	0.025797546	0.85786515	348.19363		10.470825	0.00073876	-0.00074842	-0.001083	NaN	10.605	97	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9485.9			15531	3459	8999	9189							0.08178619856971636
LQSRSSMMVD	10	Unmodified	_LQSRSSMMVD_					0	0	0			REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.2706407648501	2	577.270641	1152.52673	1.4407	0.00083165	-6.683	-0.0038579	-5.2424	-0.0030263	577.2661947564038	30.849	0.33784	30.849	30.704	31.042	0	1233	94	0.87812483	0.05702144	0.87812483	355.9283	0	23.112366						784	15	4	NaN	NaN	NaN	0.44412	1	14877	14877		21.771	1.3224	1	188480	+		15532	9258	9000	9190	12296	12296					-0.04343369865432578
LQSRSSMMVD	10	Unmodified						0	0	0			REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	REV__nc|ENSG00000118007|Q8WVM7-2|STAG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.270641	1152.52673	1.4407	0.00083165	-6.683	-0.0038579	-5.2424	-0.0030263	577.2661947564038	30.849	0.33784	30.849	30.704	31.042	0	1233	94	0.87812483	0.05702144	0.87812483	355.9283		23.112366	0.015499	0.00020634	-0.012115	NaN	21.771	784	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188480	+		15533	9258	9000	9190							-0.04343369865432578
LQSVYPPG	8	Unmodified	_LQSVYPPG_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	860.4512449367	1	860.451245	859.443968	2.3172	0.0019939	-0.38285	-0.00032942	1.9344	0.0016645	860.4504188597747	25.926	0.096508	25.926	25.877	25.974	0	396	49	1.3840506	0.028585792	1.3840506	281.63025	0	5.8167114						126	5	3	NaN	NaN	NaN	0.40747	1	5524	5524		36.036	4.4753	1	11798		+	15534	209	9001	9191	12297	12297					0.008624244603765874
LQSYLLQFH	9	Unmodified	_LQSYLLQFH_					0	0	0		ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.5414745923	3	383.541475	1147.60259	1.4944	0.00057316	0.24099	9.2431E-05	1.7354	0.00066559	383.54159145820574	15.534	0.096053	15.534	15.51	15.606	0	1389	49	0.7821392	0.029620469	0.7821392	475.55313	0	18.009735						141	5	4	NaN	NaN	NaN	0.67818	1	14730	14730		0.44583	0.15874	1	17987			15535	1294	9002	9192	12298	12298					0.03469718368660324
LQTFDVVK	8	Unmodified	_LQTFDVVK_					0	0	0		ENST00000433473.7_1_1:40539414-40539546:-|nuORF	ENST00000433473.7_1_1:40539414-40539546:-|nuORF	ENST00000433473.7_1_1:40539414-40539546:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.5353089171001	1	949.535309	948.528032	1.5298	0.0014526	4.4748	0.0042489	6.0046	0.0057015	949.538874065547	34.324	0.048233	34.324	34.3	34.348	0	291	61	1.446459	0.035610795	1.446459	293.89362	0	7.235443						64	3	2	NaN	NaN	NaN	0.75561	1	7050	7050		15.175	2.1725	1	5099.9			15536	6981	9003	9193	12299	12299					0.05170955557287016
LQTSGTSG	8	Unmodified	_LQTSGTSG_					0	0	0		ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.3628238599001	1	750.362824	749.355547	2.4355	0.0018275	5.4121	0.004061	7.8476	0.0058886	750.3669419957915	23.392	0.31365	23.379	23.331	23.644	-0.013296	588	166	1.2693287	0.09910095	1.2678093	258.88303	0	20.211899						512	14	2	NaN	NaN	NaN	0.72043	1	3963	3963		17.78	0	1	262560			15537	6106	9004	9194	12300	12300					-0.02915615850076847
LQVHNLNLH	9	Unmodified	_LQVHNLNLH_					0	0	0			REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.30398980375	2	544.30399	1086.59343	1.6386	0.00089192	-2.7522	-0.001498	-1.1135	-0.0006061	544.3028118215535	16.782	0.16784	16.782	16.71	16.877	0	1248	64	0.8689189	0.038656652	0.8689189	352.44946	0	15.67984						204	8	2	NaN	NaN	NaN	0.55027	1	12251	12251		7.5404	0.55601	1	16174	+		15538	11605	9005	9195	12301	12301					0.053593698029771986
LQVHNLNLH	9	Unmodified						0	0	0			REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.30399	1086.59343	1.6386	0.00089192	-2.7522	-0.001498	-1.1135	-0.0006061	544.3028118215535	16.782	0.16784	16.782	16.71	16.877	0	1248	64	0.8689189	0.038656652	0.8689189	352.44946		15.67984	-0.027692	-0.00054939	0.0016806	NaN	7.5404	204	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16174	+		15539	11605	9005	9195							0.053593698029771986
LQVHNLNLH	9	Unmodified						0	0	0			REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	REV__ENST00000280701.7_1_3:25831614-25832591:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.30399	1086.59343	1.6798	0.0009143	-1.8324	-0.0009974	-0.15268	-8.3105E-05	544.30267330245	16.85	0.16776	16.837	16.765	16.933	-0.013294	1251	64	0.8670771	0.038660824	0.8655577	351.7024		15.681519	0.027692	0.00045186	-0.0016806	NaN	7.5404	194	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17677	+		15540	11605	9005	9195							0.053593698029771986
LQWGPGAG	8	Unmodified	_LQWGPGAG_					0	0	0			REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF	REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.2006704377	2	393.20067	784.386788	1.5253	0.00059974	1.1155	0.0004386	2.6407	0.0010383	393.2012353378033	23.513	0.14458	23.513	23.465	23.61	0	1428	37	0.7580582	0.022244275	0.7580582	308.96094	0	9.066101						151	7	3	NaN	NaN	NaN	0.80071	1	4558	4558		9.1232	0	1	18227	+		15541	11672	9006	9196	12302	12302					-0.014029980253326357
LQWGPGAG	8	Unmodified						0	0	0			REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF	REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	393.20067	784.386788	1.5253	0.00059974	1.1155	0.0004386	2.6407	0.0010383	393.2012353378033	23.513	0.14458	23.513	23.465	23.61	0	1428	37	0.7580582	0.022244275	0.7580582	308.96094		9.066101	-0.005343	-0.00051607	-0.00016708	NaN	9.1232	151	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18227	+		15542	11672	9006	9196							-0.014029980253326357
LQWLFAIFAF	10	Unmodified	_LQWLFAIFAF_					0	0	0		nc|ENSG00000143028|Q5VXT5-2|SYPL2;ENSG00000143028|ENST00000369872|SYPL2	nc|ENSG00000143028|Q5VXT5-2|SYPL2	nc|ENSG00000143028|Q5VXT5-2|SYPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.23398193879996	3	419.233982	1254.68012	1.2766	0.00053519	-6.8741	-0.0028819	-5.5976	-0.0023467	419.23067740211934	20.501	0.096142	20.501	20.453	20.549	0	1401	34	0.77473325	0.020371795	0.77473325	470.57343	0	12.37384						89	5	3	NaN	NaN	NaN	0.772	1	17895	17895		0.9188	0	1	7301.6			15543	3394	9007	9197	12303	12303					0.06296356304824258
LRADAAACCY	10	Unmodified	_LRADAAACCY_					0	0	0			REV__ENSG00000178343|ENST00000319234|SHISA3	REV__ENSG00000178343|ENST00000319234|SHISA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.73369415255	2	528.733694	1055.45284	0.77558	0.00041008	2.1984	0.0011624	2.974	0.0015724	528.7354907533309	29.231	0.12068	29.224	29.175	29.296	-0.0077209	1278	64	0.85049206	0.038736105	0.8489726	345.10257	0	15.717865						193	6	4	NaN	NaN	NaN	0.65442	1	10632	10632		11.17	3.63	1	20618	+		15544	10784	9008	9198	12304	12304					-0.07267293237100603
LRADAAACCY	10	Unmodified						0	0	0			REV__ENSG00000178343|ENST00000319234|SHISA3	REV__ENSG00000178343|ENST00000319234|SHISA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.733694	1055.45284	0.77558	0.00041008	2.1984	0.0011624	2.974	0.0015724	528.7354907533309	29.231	0.12068	29.224	29.175	29.296	-0.0077209	1278	64	0.85049206	0.038736105	0.8489726	345.10257		15.717865	0.0078234	-0.00013953	0.00016217	NaN	11.17	193	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20618	+		15545	10784	9008	9198							-0.07267293237100603
LRAWLGELEAQ	11	Unmodified	_LRAWLGELEAQ_					0	0	0			REV__ENST00000489780.5_1_20:25462577-25472157:-|nuORF	REV__ENST00000489780.5_1_20:25462577-25472157:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.2348216706333	3	429.234822	1284.68264	0.91328	0.00039201	4.4138	0.0018946	5.3271	0.0022866	429.23665474751687	12.822	0.28789	12.813	12.693	12.98	-0.00947	1470	40	0.7320868	0.024135947	0.73056734	444.557	0	14.656464						341	13	4	NaN	NaN	NaN	0.56282	1	17693	17693		12.063	1.8497	1	99167	+		15546	8841	9009	9199	12305	12305					0.051681599718449434
LRCNELSLM	9	Unmodified	_LRCNELSLM_					0	0	0			REV__nc|ENSG00000167634|Q8WX94|NLRP7	REV__nc|ENSG00000167634|Q8WX94|NLRP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5383621595	1	1078.53836	1077.53109	1.8183	0.0019611	-1.7798	-0.0019195	0.038496	4.1519E-05	1078.535241663135	28.725	0.38609	28.725	28.605	28.991	0	126	205	1.544062	0.120449066	1.544062	313.1866	0	24.43103						958	17	3	NaN	NaN	NaN	0.31737	1	11861	11861		17.799	0	1	345380	+		15547	10468	9010	9200	12306	12306					-0.004578606518634842
LRCNELSLM	9	Unmodified						0	0	0			REV__nc|ENSG00000167634|Q8WX94|NLRP7	REV__nc|ENSG00000167634|Q8WX94|NLRP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1078.53836	1077.53109	1.8183	0.0019611	-1.7798	-0.0019195	0.038496	4.1519E-05	1078.535241663135	28.725	0.38609	28.725	28.605	28.991	0	126	205	1.544062	0.120449066	1.544062	313.1866		24.43103	0.0045524	0.00043978	0.00075972	NaN	17.799	958	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345380	+		15548	10468	9010	9200							-0.004578606518634842
LRDMAFHKWLT	11	Unmodified	_LRDMAFHKWLT_					0	0	0			REV__ENST00000399448.5_1_12:7070086-7070338:+|nuORF	REV__ENST00000399448.5_1_12:7070086-7070338:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3740891291501	2	709.374089	1416.73363	1.7595	0.0012481	-0.35748	-0.00025359	1.402	0.00099452	709.3750863067617	27.518	0.072428	27.508	27.508	27.581	-0.009552	1053	22	0.9882094	0.012802362	0.98669	399.66415	0	5.177704						40	4	2	NaN	NaN	NaN	0.75376	1	19240	19240		3.9281	0.35833	1	2634.9	+		15549	12031	9011	9201	12307	12307					0.0419278574506734
LRDQRRFLE	9	Unmodified	_LRDQRRFLE_					0	0	0		ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	ENSG00000047662|ENST00000265018|FAM184B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8465531102	2	616.846553	1231.67855	1.2917	0.00079675	-11.132	-0.006867	-9.8408	-0.0060703	617.3380632948209	16.994	0.071907	16.981	16.957	17.029	-0.013294	1110	61	0.95342636	0.036671042	0.9519069	386.15634	0	14.852478						82	4	2	NaN	NaN	NaN	0.63698	1	16598	16598		3.9685	0.70751	1	9852.2			15550	552	9012	9202	12308	12308					0.07198115268784022
LRDYITYWKEY	11	Unmodified	_LRDYITYWKEY_					0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.3879163983999	2	775.387916	1548.76128	2.1845	0.0016938	7.6111	0.0059016	9.7956	0.0075954	775.3932585350622	16.179	0.095917	16.166	16.142	16.238	-0.012993	987	40	1.0283957	0.02371955	1.0268762	415.5738	0	9.585083						148	5	4	NaN	NaN	NaN	0.76654	1	19670	19670		2.5994	0.26131	1	24533			15551	923	9013	9203	12309	12309					0.008849674862403845
LRDYITYWKEY	11	Unmodified						0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	775.387916	1548.76128	1.8647	0.0014458	8.1692	0.0063343	10.034	0.0077802	775.3942558262687	16.182	0.12005	16.182	16.158	16.278	0	987	43	1.0283957	0.025542736	1.0283957	415.5738		10.321838	0.007881	0.00040735	0.00075972	NaN	2.5994	164	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23259			15552	923	9013	9203							0.008849674862403845
LREIQPEKLTH	11	Unmodified	_LREIQPEKLTH_					0	0	0			REV__nc|ENSG00000214216|Q1A5X6-3|IQCJ	REV__nc|ENSG00000214216|Q1A5X6-3|IQCJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.2612593218	3	455.261259	1362.76195	3.4499	0.0015706	-10.061	-0.0045803	-6.611	-0.0030097	455.25913428375856	19.996	0.024067	19.982	19.982	20.006	-0.014141	1503	25	0.711653	0.014869809	0.71013355	431.88565	0	9.024139						19	2	2	NaN	NaN	NaN	0.51337	1	18809	18809		17.995	9.0532	1	1021.1	+		15553	13230	9014	9204	12310	12310					0.09507806925989826
LRFAIPRP	8	Unmodified	_LRFAIPRP_					0	0	0		ENST00000380494.9_1_5:74807075-74807210:-|nuORF	ENST00000380494.9_1_5:74807075-74807210:-|nuORF	ENST00000380494.9_1_5:74807075-74807210:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.30326152224995	2	485.303262	968.59197	2.262	0.0010978	-2.7285	-0.0013242	-0.46649	-0.00022639	485.3018906986049	22.548	0.048246	22.535	22.511	22.559	-0.01354	1317	31	0.8265074	0.018462718	0.82498795	335.75742	0	7.500244						42	3	2	NaN	NaN	NaN	0.84727	1	7428	7428		1.2418	0	1	3169.2			15554	6734	9015	9205	12311	12311					0.10641780504874987
LRFAIPRP	8	Unmodified						0	0	0		ENST00000380494.9_1_5:74807075-74807210:-|nuORF	ENST00000380494.9_1_5:74807075-74807210:-|nuORF	ENST00000380494.9_1_5:74807075-74807210:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.303262	968.59197	2.0487	0.00099422	-3.8869	-0.0018863	-1.8382	-0.0008921	485.30080778290704	22.525	0.048201	22.525	22.501	22.549	0	1314	37	0.8283535	0.0221529	0.8283535	336.50742		8.999329	-0.0049852	-0.00073255	0.0016828	NaN	1.2418	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3018.8			15555	6734	9015	9205							0.10641780504874987
LRFTLFYCF	9	Unmodified	_LRFTLFYCF_					0	0	0			REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.3098949236	2	605.309895	1208.60524	1.1394	0.00068972	3.9583	0.002396	5.0977	0.0030857	605.3119230541354	29.522	0.096539	29.522	29.498	29.594	0	993	94	1.0247463	0.056574345	1.0247463	415.13007	0	22.91858						228	5	3	NaN	NaN	NaN	0.68748	1	16697	16697		0.27539	0.045253	1	18095	+		15556	13589	9016	9206	12312	12312					0.009278505019665317
LRFTLFYCF	9	Unmodified						0	0	0			REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.309895	1208.60524	1.1394	0.00068972	3.9583	0.002396	5.0977	0.0030857	605.3119230541354	29.522	0.096539	29.522	29.498	29.594	0	993	94	1.0247463	0.056574345	1.0247463	415.13007		22.91858	-0.020163	-0.00093243	-0.001065	NaN	0.27539	228	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18095	+		15557	13589	9016	9206							0.009278505019665317
LRFTLFYCF	9	Unmodified						0	0	0			REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	REV__tr|U7T357|U7T357_FUSNUSodium/glutamatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00403PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	605.309895	1208.60524	0.67585	0.0004091	5.4875	0.0033216	6.1634	0.0037307	605.3136028717706	29.569	0.14478	29.562	29.514	29.659	-0.0070667	987	103	1.0283957	0.06201935	1.0268762	416.60846		25.124329	0.020163	0.00091887	0.001065	NaN	0.27539	220	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18858	+		15558	13589	9016	9206							0.009278505019665317
LRGAGQAH	8	Unmodified	_LRGAGQAH_					0	0	0			REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.22246851229994	2	405.222469	808.430384	1.4086	0.00057081	-10.935	-0.004431	-9.526	-0.0038602	405.2175010488138	22.019	0.072279	22.019	21.994	22.067	0	1416	37	0.76547134	0.022234678	0.76547134	311.82315	0	9.057526						74	4	3	NaN	NaN	NaN	0.65075	1	4872	4872		22.126	9.5385	1	5881.9	+		15559	12869	9017	9207	12313	12313					0.018506114717865785
LRGAGQAH	8	Unmodified						0	0	0			REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.222469	808.430384	1.4086	0.00057081	-10.935	-0.004431	-9.526	-0.0038602	405.2175010488138	22.019	0.072279	22.019	21.994	22.067	0	1416	37	0.76547134	0.022234678	0.76547134	311.82315		9.057526	-0.017078	0.00049003	0.0016862	NaN	22.126	74	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5881.9	+		15560	12869	9017	9207							0.018506114717865785
LRGAGQAH	8	Unmodified						0	0	0			REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	REV__ENST00000581996.2_1_18:74204992-74205115:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.222469	808.430384	1.4834	0.00060112	-12.056	-0.0048852	-10.572	-0.0042841	405.21758909074543	22.066	0.072296	22.053	22.029	22.101	-0.013731	1419	31	0.76361835	0.018530905	0.7620989	311.06833		7.5487366	0.017078	-0.00041849	-0.0016862	NaN	22.126	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4719.5	+		15561	12869	9017	9207							0.018506114717865785
LRGEGGPL	8	Unmodified	_LRGEGGPL_					0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|9|1|sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|9|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.7270523637	2	399.727052	797.439552	1.4897	0.00059549	-5.7073	-0.0022814	-4.2176	-0.0016859	399.72498824213926	23.417	0.16883	23.417	23.296	23.465	0	1419	49	0.76361835	0.029655814	0.76361835	311.13974	0	12.083405						151	8	2	NaN	NaN	NaN	0.83582	1	4725	4725		4.4131	0	1	15073	+		15562	13350	9018	9208	12314	12314					0.03272960037475059
LRGEGGPL	8	Unmodified						0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|9|1|sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|9|1|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.727052	797.439552	1.4897	0.00059549	-5.7073	-0.0022814	-4.2176	-0.0016859	399.72498824213926	23.417	0.16883	23.417	23.296	23.465	0	1419	49	0.76361835	0.029655814	0.76361835	311.13974		12.083405	0	0	0	NaN	4.4131	151	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15073	+		15563	13350	9018	9208							0.03272960037475059
LRGLEYPLV	9	Unmodified	_LRGLEYPLV_					0	0	0			REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.3134918575499	2	530.313492	1058.61243	1.7739	0.00094072	-0.28051	-0.00014876	1.4934	0.00079196	530.8134708818359	26.263	0.072346	26.252	26.228	26.3	-0.011137	1278	31	0.85049206	0.01843679	0.8489726	345.08932	0	7.480774						45	4	2	NaN	NaN	NaN	0.25448	1	10809	10809		21.835	1.3863	1	4697.1	+		15564	9744	9019	9209	12315	12315					0.08546906374022001
LRGLEYPLV	9	Unmodified						0	0	0			REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.313492	1058.61243	2.2051	0.0011694	-0.036531	-1.9373E-05	2.1685	0.00115	530.31368186826	26.215	0.072378	26.215	26.191	26.263	0	1281	28	0.84864825	0.016593993	0.84864825	344.34122		6.7330627	-0.018446	0.00010052	-0.00016217	NaN	21.835	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4390.4	+		15565	9744	9019	9209							0.08546906374022001
LRGLEYPLV	9	Unmodified						0	0	0			REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	REV__ENST00000506166.1_1_4:78663390-78740391:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.313492	1058.61243	1.7739	0.00094072	-0.28051	-0.00014876	1.4934	0.00079196	530.8134708818359	26.263	0.072346	26.252	26.228	26.3	-0.011137	1278	31	0.85049206	0.01843679	0.8489726	345.08932		7.480774	0.018446	-0.00015825	0.00016217	NaN	21.835	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4697.1	+		15566	9744	9019	9209							0.08546906374022001
LRGPGGPGI	9	Unmodified	_LRGPGGPGI_					0	0	0			REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.24286960340004	2	412.24287	822.471186	1.0492	0.00043252	1.4256	0.00058768	2.4748	0.0010202	412.2432953022654	26.818	0.12069	26.808	26.759	26.88	-0.010645	1374	61	0.791392	0.037021577	0.7898726	322.29047	0	15.076874						95	6	2	NaN	NaN	NaN	0.55027	1	4938	4938		7.5404	0	1	9033.4	+		15567	12569	9020	9210	12316	12316					0.05284952791430442
LRGPGGPGI	9	Unmodified						0	0	0			REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	412.24287	822.471186	1.25	0.0005153	0.94327	0.00038886	2.1933	0.00090415	412.24333634160536	26.77	0.097002	26.77	26.746	26.843	0	1374	67	0.791392	0.0407238	0.791392	322.29047		16.584564	-0.018611	-0.0001884	0.00075972	NaN	7.5404	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9151.9	+		15568	12569	9020	9210							0.05284952791430442
LRGPGGPGI	9	Unmodified						0	0	0			REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	REV__ENST00000513680.5_1_6:15523443-15533500:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	412.24287	822.471186	1.0492	0.00043252	1.4256	0.00058768	2.4748	0.0010202	412.2432953022654	26.818	0.12069	26.808	26.759	26.88	-0.010645	1374	61	0.791392	0.037021577	0.7898726	322.29047		15.076874	0.018611	0.00020925	-0.00075972	NaN	7.5404	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9033.4	+		15569	12569	9020	9210							0.05284952791430442
LRHSCATIL	9	Unmodified	_LRHSCATIL_					0	0	0		tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.28166880040004	2	507.281669	1012.54878	0.88949	0.00045122	4.0934	0.0020765	4.9829	0.0025277	507.28504031778874	20.791	0.048178	20.776	20.752	20.801	-0.014086	1323	73	0.8228144	0.044291377	0.82129496	334.054	0	17.981842						83	3	2	NaN	NaN	NaN	0.48181	1	8914	8914		10.36	1.3982	1	11094			15570	13799	9021	9211	12317	12317					0.04301222665299065
LRHSCATIL	9	Unmodified						0	0	0		tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	tr|U7SPD1|U7SPD1_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01823PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.281669	1012.54878	1.4376	0.00072929	5.0564	0.002565	6.4941	0.0032943	507.2849509351655	20.766	0.096418	20.766	20.718	20.814	0	1323	70	0.8228144	0.042448223	0.8228144	334.054		17.233551	-0.0051708	0.00034677	0.00075972	NaN	10.36	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13234			15571	13799	9021	9211							0.04301222665299065
LRIRRCDLPH	10	Unmodified	_LRIRRCDLPH_					0	0	0		ENST00000425350.1_1_13:49151796-49152201:-|nuORF	ENST00000425350.1_1_13:49151796-49152201:-|nuORF	ENST00000425350.1_1_13:49151796-49152201:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.8642229346001	2	639.864223	1277.71389	2.1618	0.0013833	-5.8354	-0.0037338	-3.6736	-0.0023506	639.8606672400816	39.066	0.19302	39.071	39.047	39.24	0.0046806	1176	100	0.9130621	0.060667455	0.91154265	369.6603	0	24.561676						621	9	3	NaN	NaN	NaN	0.77513	1	17560	17560		1.7022	0.19679	1	273690			15572	6939	9022	9212	12318	12318					0.08614454524945359
LRKKDASN	8	Unmodified	_LRKKDASN_					0	0	0			REV__ENSG00000234965|ENST00000621082|SHISA8	REV__ENSG00000234965|ENST00000621082|SHISA8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.5319548737	1	931.531955	930.524678	-0.48789	-0.00045448	-5.2843	-0.0049225	-5.7722	-0.005377	931.5274171160073	55.218	0.12025	55.217	55.193	55.314	-0.00061798	303	67	1.4393384	0.039171934	1.437819	292.52783	0	7.961212						173	6	2	NaN	NaN	NaN	0.83211	1	6484	6484		4.9097	1.7564	1	18433	+		15573	11324	9023	9213	12319	12319					0.05663705503275196
LRKKDASN	8	Unmodified						0	0	0			REV__ENSG00000234965|ENST00000621082|SHISA8	REV__ENSG00000234965|ENST00000621082|SHISA8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	931.531955	930.524678	1.9191	0.0017877	-9.4502	-0.0088032	-7.5311	-0.0070155	931.5234665270175	55.196	0.096279	55.196	55.196	55.292	0	300	85	1.4411188	0.049855232	1.4411188	292.8897		10.132446	-0.010657	-0.0019799	0.0016499	NaN	4.9097	179	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20990	+		15574	11324	9023	9213							0.05663705503275196
LRKKDASN	8	Unmodified						0	0	0			REV__ENSG00000234965|ENST00000621082|SHISA8	REV__ENSG00000234965|ENST00000621082|SHISA8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	931.531955	930.524678	-0.48789	-0.00045448	-5.2843	-0.0049225	-5.7722	-0.005377	931.5274171160073	55.218	0.12025	55.217	55.193	55.314	-0.00061798	303	67	1.4393384	0.039171934	1.437819	292.52783		7.961212	0.010657	0.0019008	-0.0016499	NaN	4.9097	173	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18433	+		15575	11324	9023	9213							0.05663705503275196
LRKMRRNHK	9	Unmodified	_LRKMRRNHK_					0	0	0			REV__nc|ENSG00000143740|Q5SQN1-4|SNAP47	REV__nc|ENSG00000143740|Q5SQN1-4|SNAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8723823177	2	619.872382	1237.73021	0.84012	0.00052077	-6.5086	-0.0040345	-5.6685	-0.0035137	619.8682428101797	32.104	0.12068	32.104	31.983	32.104	0	1095	61	0.9625867	0.036619663	0.9625867	389.8453	0	14.830872						132	6	2	NaN	NaN	NaN	0.67989	1	17479	17479		0.92586	0.12598	1	20875	+		15576	9877	9024	9214	12320	12320					0.12085580481698344
LRKMRRNHK	9	Unmodified						0	0	0			REV__nc|ENSG00000143740|Q5SQN1-4|SNAP47	REV__nc|ENSG00000143740|Q5SQN1-4|SNAP47	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.872382	1237.73021	0.84012	0.00052077	-6.5086	-0.0040345	-5.6685	-0.0035137	619.8682428101797	32.104	0.12068	32.104	31.983	32.104	0	1095	61	0.9625867	0.036619663	0.9625867	389.8453		14.830872	0.026569	-0.0007293	-0.00015602	NaN	0.92586	132	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20875	+		15577	9877	9024	9214							0.12085580481698344
LRKSLKIIYL	10	Unmodified	_LRKSLKIIYL_					0	0	0		ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000204481|ENST00000334600|PRAMEF14;ENSG00000116721|ENST00000332296|PRAMEF1	ENSG00000279169|ENST00000625019|PRAMEF13	ENSG00000279169|ENST00000625019|PRAMEF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1246.8245550666002	1	1246.82456	1245.81728	1.85	0.0023066	0.25062	0.00031248	2.1006	0.0026191	1246.8253623344333	40.152	0.048103	40.152	40.104	40.152	0	66	40	1.579413	0.022952676	1.579413	319.80917	0	4.6476135						74	3	3	NaN	NaN	NaN	0.77928	1	17665	17665		0.69115	0	1	4772.9			15578	2103	9025	9215	12321	12321					0.2042026518442981
LRKSLKIIYL	10	Unmodified	_LRKSLKIIYL_					0	0	0		ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000204481|ENST00000334600|PRAMEF14;ENSG00000116721|ENST00000332296|PRAMEF1	ENSG00000279169|ENST00000625019|PRAMEF13	ENSG00000279169|ENST00000625019|PRAMEF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1246.8245550666002	1	1246.82456	1245.81728	2.0397	0.0025431	2.4045	0.002998	4.4442	0.0055411	1246.8284202630086	41.281	0.072231	41.281	41.257	41.329	0	69	37	1.5776473	0.02118826	1.5776473	319.45163	0	4.2903137						58	4	2	NaN	NaN	NaN	0.77928	1	17668	17668		0.69115	0	1	3776.6			15579	2103	9025	9215	12322	12322					0.2042026518442981
LRLLLRKSLM	10	Unmodified	_LRLLLRKSLM_					0	0	0		ENST00000583087.5_1_3:123337563-123337614:-|nuORF	ENST00000583087.5_1_3:123337563-123337614:-|nuORF	ENST00000583087.5_1_3:123337563-123337614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.9075678057501	2	621.907568	1241.80058	1.4744	0.00091694	5.6211	0.0034958	7.0955	0.0044128	622.4117523287739	55.725	0.072357	55.725	55.701	55.773	0	1137	40	0.9369253	0.023842633	0.9369253	379.43875	0	9.655823						93	4	2	NaN	NaN	NaN	0.78157	1	17581	17581		0.13493	0.021872	1	19378			15580	7686	9026	9216	12323	12323					0.1893544102681517
LRLWQQWPVLF	11	Unmodified	_LRLWQQWPVLF_					0	0	0			REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.95035655653334	3	495.950357	1484.82924	1.9147	0.0009496	2.9408	0.0014585	4.8555	0.0024081	495.95250678913965	17.477	0.11992	17.477	17.405	17.525	0	1365	40	0.7969414	0.024044454	0.7969414	483.24622	0	14.580017						76	6	2	NaN	NaN	NaN	0.76733	1	20531	20531		2.4611	1.0771	1	9311.7	+		15581	11692	9027	9217	12324	12324					0.10621881927590948
LRLWQQWPVLF	11	Unmodified						0	0	0			REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	495.950357	1484.82924	1.9147	0.0009496	2.9408	0.0014585	4.8555	0.0024081	495.95250678913965	17.477	0.11992	17.477	17.405	17.525	0	1365	40	0.7969414	0.024044454	0.7969414	483.24622		14.580017	0	0	0	NaN	2.4611	76	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9311.7	+		15582	11692	9027	9217							0.10621881927590948
LRMEMLPE	8	Unmodified	_LRMEMLPE_					0	0	0			REV__ENSG00000165282|ENST00000378617|PIGO	REV__ENSG00000165282|ENST00000378617|PIGO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.75663793260003	2	509.756638	1017.49872	1.1595	0.00059106	1.817	0.00092623	2.9765	0.0015173	510.258262554437	12.534	0.048078	12.525	12.501	12.549	-0.0088425	1245	37	0.87076044	0.02210027	0.869241	353.49655	0	8.971863						57	3	2	NaN	NaN	NaN	0.73521	1	9083	9083		16.584	4.5355	1	6624.8	+		15583	10376	9028	9218	12325	12325					-0.009326480548565996
LRMEMLPE	8	Unmodified	_LRMEMLPE_					0	0	0			REV__ENSG00000165282|ENST00000378617|PIGO	REV__ENSG00000165282|ENST00000378617|PIGO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.75663793260003	2	509.756638	1017.49872	1.004	0.00051182	3.4996	0.001784	4.5037	0.0022958	509.75837419743146	12.606	0.12012	12.597	12.573	12.693	-0.0088415	1245	40	0.87076044	0.023940682	0.869241	353.49652	0	9.718994						87	6	2	NaN	NaN	NaN	0.73521	1	9084	9084		16.584	4.5355	1	9561.2	+		15584	10376	9028	9218	12326	12326					-0.009326480548565996
LRPLQGPPP	9	Unmodified	_LRPLQGPPP_					0	0	0			REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.7927266257	2	487.792727	973.5709	1.879	0.00091657	-7.1809	-0.0035028	-5.3018	-0.0025862	487.7900175575145	28.243	0.19304	28.243	28.146	28.339	0	1293	61	0.84127116	0.036893547	0.84127116	341.7306	0	14.98642						153	9	2	NaN	NaN	NaN	0.61413	1	7714	7714		4.9097	0.94122	1	12483	+		15585	13360	9029	9219	12327	12327					0.08305770405377189
LRPLQGPPP	9	Unmodified						0	0	0			REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	487.792727	973.5709	1.879	0.00091657	-7.1809	-0.0035028	-5.3018	-0.0025862	487.7900175575145	28.243	0.19304	28.243	28.146	28.339	0	1293	61	0.84127116	0.036893547	0.84127116	341.7306		14.98642	0.016905	-0.00050145	0.00075972	NaN	4.9097	153	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12483	+		15586	13360	9029	9219							0.08305770405377189
LRPLVKPKI	9	Unmodified	_LRPLVKPKI_					0	0	0		ENST00000452606.2_1_3:12880846-12881736:-|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	ENST00000452606.2_1_3:12880846-12881736:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.7350117778	1	1063.73501	1062.72774	1.0242	0.0010895	1.9612	0.0020862	2.9855	0.0031757	1063.7372313964797	39.598	0.096104	39.598	39.574	39.67	0	207	52	1.496219	0.030164957	1.496219	303.53592	0	6.119507						126	5	2	NaN	NaN	NaN	0.67818	1	11258	11258		1.072	0.84188	1	18170			15587	3489	9030	9220	12328	12328					0.19888055295700724
LRPQLAPL	8	Unmodified	_LRPQLAPL_					0	0	0		ENST00000395379.5_1_8:133787694-133790038:+|nuORF	ENST00000395379.5_1_8:133787694-133790038:+|nuORF	ENST00000395379.5_1_8:133787694-133790038:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	907.5723631253999	1	907.572363	906.565087	2.2852	0.002074	-11.483	-0.010422	-9.1982	-0.0083481	907.5625254279778	29.183	0.072428	29.175	29.127	29.2	-0.0077209	309	43	1.435777	0.024938107	1.4342575	291.91647	0	5.070343						62	4	2	NaN	NaN	NaN	0.80071	1	6066	6066		9.1232	0	1	3676.3			15588	6785	9031	9221	12329	12329					0.10806671893681141
LRPRHVWR	8	Unmodified	_LRPRHVWR_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.8930645783	3	373.893065	1118.65736	2.1764	0.00081375	2.2725	0.00084967	4.4489	0.0016634	374.2282058334487	17.306	0.095985	17.292	17.22	17.316	-0.013569	1431	49	0.75620437	0.029675126	0.7546849	459.92535	0	18.048492						73	5	2	NaN	NaN	NaN	0.78967	1	13227	13227		7.5876	0	1	5739.5	+		15589	11627	9032	9222	12330	12330					0.10278194750594594
LRQCILRSL	9	Unmodified	_LRQCILRSL_					0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3316929982001	2	551.331693	1100.64883	1.8655	0.0010285	3.5716	0.0019691	5.4371	0.0029976	551.3334736310367	19.346	0.024014	19.332	19.332	19.356	-0.014141	1230	40	0.8799654	0.023925126	0.878446	356.87302	0	9.702911						41	2	2	NaN	NaN	NaN	0.56377	1	12543	12543		6.9844	0	1	5023.2	+		15590	13097	9033	9223	12331	12331					0.10253459999103143
LRQEGVII	8	Unmodified	_LRQEGVII_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.5621923696002	1	927.562192	926.554916	0.73557	0.00068228	-9.9774	-0.0092546	-9.2418	-0.0085724	927.5529545748698	27.59	0.072386	27.581	27.557	27.629	-0.009552	255	67	1.4678029	0.03911376	1.4662834	298.33154	0	7.9498596						108	4	2	NaN	NaN	NaN	0.3042	1	6400	6400		41.785	0	1	11813			15591	175	9034	9224	12332	12332					0.0887006416847953
LRQHQVLLY	9	Unmodified	_LRQHQVLLY_					0	0	0			REV__nc|ENSG00000152439|Q6PK81-2|ZNF773	REV__nc|ENSG00000152439|Q6PK81-2|ZNF773	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3431149642502	2	585.343115	1168.67168	1.8763	0.0010983	-8.6741	-0.0050773	-6.7977	-0.003979	585.338005115816	28.894	0.14479	28.894	28.846	28.991	0	1158	70	0.92408	0.0422377	0.92408	374.49405	0	17.11731						201	7	2	NaN	NaN	NaN	0.36492	1	15450	15450		15.175	1.1338	1	67148	+		15592	8948	9035	9225	12333	12333					0.0940880238824775
LRQPASHEWD	10	Unmodified	_LRQPASHEWD_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.7992685666001	2	619.799269	1237.58398	1.4462	0.00089638	-8.1627	-0.0050592	-6.7165	-0.0041629	619.7951367634078	22.115	0.21712	22.115	22.043	22.26	0	1161	64	0.9222442	0.038552344	0.9222442	373.5072	0	15.613647						296	10	3	NaN	NaN	NaN	0.64158	1	17462	17462		12.049	2.3027	1	33609	+		15593	11339	9036	9226	12334	12334					-0.025304432731900306
LRQPASHEWD	10	Unmodified						0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.799269	1237.58398	1.4462	0.00089638	-8.1627	-0.0050592	-6.7165	-0.0041629	619.7951367634078	22.115	0.21712	22.115	22.043	22.26	0	1161	64	0.9222442	0.038552344	0.9222442	373.5072		15.613647	0	0	0	NaN	12.049	296	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33609	+		15594	11339	9036	9226							-0.025304432731900306
LRRHRYSIF	9	Unmodified	_LRRHRYSIF_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.3596306957	2	624.359631	1246.70471	1.2312	0.00076872	5.1331	0.0032049	6.3643	0.0039736	624.3617010274434	41.45	0.072266	41.45	41.45	41.522	0	1260	28	0.8615505	0.016581416	0.8615505	348.89816	0	6.714905						42	4	2	NaN	NaN	NaN	0.66529	1	17696	17696		2.1763	1.2505	1	2191.7			15595	3778	9037	9227	12335	12335					0.09122429230933449
LRSAGKLN	8	Unmodified	_LRSAGKLN_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.7614264972999	2	429.761426	857.5083	1.842	0.00079161	-1.8377	-0.00078978	0.0042541	1.8283E-06	429.76063345583117	17.909	0.095945	17.909	17.885	17.981	0	1488	70	0.7209441	0.042720556	0.7209441	293.4042	0	17.386078						208	5	3	NaN	NaN	NaN	0.76406	1	5509	5509		14.042	1.4537	1	45912			15596	3182	9038	9228	12336	12336					0.07384624337157675
LRSVGVFL	8	Unmodified	_LRSVGVFL_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;ENST00000487002.1_1_1:155279496-155279757:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.77654524525	2	445.776545	889.538538	1.3881	0.00061878	-1.7303	-0.00077134	-0.34224	-0.00015256	445.776162036619	22.79	0.14473	22.79	22.742	22.887	0	1476	64	0.72837335	0.03898883	0.72837335	296.25958	0	15.858368						204	7	3	NaN	NaN	NaN	0.75561	1	5934	5934		15.175	2.5875	1	33645			15597	4073	9039	9229	12337	12337					0.089349830023707
LRTCRLDCKFF	11	Unmodified	_LRTCRLDCKFF_					0	0	0			REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF	REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.36012447415	2	701.360124	1400.7057	0.71424	0.00050094	5.7264	0.0040163	6.4406	0.0045172	701.3647418005072	37.072	0.12058	37.072	37.048	37.169	0	1089	46	0.96624947	0.027460277	0.96624947	390.82602	0	11.107056						101	6	2	NaN	NaN	NaN	0.6875	1	20070	20070		8.2775	1.8476	1	8047.8	+		15598	12820	9040	9230	12338	12338					0.02137139493288487
LRTLLVIA	8	Unmodified	_LRTLLVIA_					0	0	0		nc|ENSG00000197912|Q9UQ90-2|SPG7;ENSG00000197912|ENST00000645818|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.6084142807001	1	898.608414	897.601138	1.8229	0.0016381	1.751	0.0015734	3.5739	0.0032115	898.6095737409433	57.981	0.16817	57.981	57.885	58.053	0	288	61	1.4482387	0.03559184	1.4482387	294.49408	0	7.237488						227	8	2	NaN	NaN	NaN	0.82797	1	6034	6034		5.4659	2.3125	1	30504			15599	5741	9041	9231	12339	12339					0.1482412907056414
LRWFKRRV	8	Unmodified	_LRWFKRRV_					0	0	0			REV__ENST00000598903.5_2_10:109800211-109800896:-|nuORF	REV__ENST00000598903.5_2_10:109800211-109800896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.57696498479993	3	387.576965	1159.70907	0.60698	0.00023525	3.9887	0.0015459	4.5956	0.0017812	387.57831950831434	31.332	0.048267	31.332	31.284	31.332	0	1485	43	0.72280174	0.025999546	0.72280174	439.42062	0	15.806213						52	3	2	NaN	NaN	NaN	0.84824	1	15142	15142		0.69115	0.30605	1	4747.2	+		15600	12952	9042	9232	12340	12340					0.13559938444473119
LRWFKRRV	8	Unmodified						0	0	0			REV__ENST00000598903.5_2_10:109800211-109800896:-|nuORF	REV__ENST00000598903.5_2_10:109800211-109800896:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	387.576965	1159.70907	0.60698	0.00023525	3.9887	0.0015459	4.5956	0.0017812	387.57831950831434	31.332	0.048267	31.332	31.284	31.332	0	1485	43	0.72280174	0.025999546	0.72280174	439.42062		15.806213	0	0	0	NaN	0.69115	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4747.2	+		15601	12952	9042	9232							0.13559938444473119
LRYDWSSLF	9	Unmodified	_LRYDWSSLF_					0	0	0			REV__ENST00000435508.6_3_3:49507816-49547930:+|nuORF	REV__ENST00000435508.6_3_3:49507816-49547930:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.2012294449333	3	396.201229	1185.58186	1.0545	0.00041781	-9.5215	-0.0037724	-8.467	-0.0033546	396.1982170855357	27.326	0.048267	27.326	27.302	27.35	0	1473	28	0.7302302	0.016711295	0.7302302	443.8231	0	10.156891						71	3	3	NaN	NaN	NaN	0.33629	1	16024	16024		10.965	0	1	7771.2	+		15602	12172	9043	9233	12341	12341					-0.003508720110176
LRYKFYDHEAF	11	Unmodified	_LRYKFYDHEAF_					0	0	0		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.91385959990004	3	496.91386	1487.71975	1.5778	0.00078403	-7.4144	-0.0036843	-5.8366	-0.0029003	497.2444739090434	23.802	0.072338	23.789	23.765	23.837	-0.013048	1386	40	0.78399014	0.024062753	0.7824707	475.3844	0	14.59082						53	4	2	NaN	NaN	NaN	0.77436	1	19534	19534		1.2289	0.12687	1	6305.1			15603	4587	9044	9234	12342	12342					-0.004601684823910546
LRYLEMGI	8	Unmodified	_LRYLEMGI_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5390140865001	1	994.539014	993.531738	1.2065	0.0011999	-10.975	-0.010915	-9.7686	-0.0097152	994.5288079293418	33.673	0.048283	33.673	33.648	33.697	0	186	70	1.5086359	0.040802717	1.5086359	306.32803	0	8.284973						93	3	2	NaN	NaN	NaN	0.67593	1	8345	8345		20.555	2.7751	1	7868.5			15604	5474	9045	9235	12343	12343					0.03471302059483605
LRYRRLLR	8	Unmodified	_LRYRRLLR_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.5841195593333	3	382.58412	1144.73053	1.3983	0.00053497	0.066817	2.5563E-05	1.4651	0.00056053	382.5843690913925	23.947	0.072401	23.947	23.923	23.995	0	1464	55	0.73579943	0.033406258	0.73579943	447.39114	0	20.312164						128	4	3	NaN	NaN	NaN	0.73961	1	14623	14623		16.584	1.2732	1	13101	+		15605	11212	9046	9236	12344	12344					0.16395323473216195
LRYVDFHYL	9	Unmodified	_LRYVDFHYL_					0	0	0			REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3218482059001	2	613.321848	1224.62914	0.9217	0.0005653	-4.2172	-0.0025865	-3.2955	-0.0020212	613.3181138925323	20.814	0.1686	20.814	20.79	20.959	0	1137	79	0.9369253	0.047708333	0.9369253	379.49728	0	19.324066						226	8	2	NaN	NaN	NaN	0.47587	1	17094	17094		10.605	0.24481	1	66617	+		15606	13506	9047	9237	12345	12345					0.025814072600041982
LRYVDFHYL	9	Unmodified						0	0	0			REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.321848	1224.62914	0.9217	0.0005653	-4.2172	-0.0025865	-3.2955	-0.0020212	613.3181138925323	20.814	0.1686	20.814	20.79	20.959	0	1137	79	0.9369253	0.047708333	0.9369253	379.49728		19.324066	0	0	0	NaN	10.605	226	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66617	+		15607	13506	9047	9237							0.025814072600041982
LSAAGLSS	8	Unmodified	_LSAAGLSS_					0	0	0		ENST00000229465.10_1_14:62037258-62037363:+|nuORF	ENST00000229465.10_1_14:62037258-62037363:+|nuORF	ENST00000229465.10_1_14:62037258-62037363:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3777456426001	1	705.377746	704.370469	1.2419	0.00087601	7.5185	0.0053034	8.7604	0.0061794	705.3826246128071	55.965	0.09594	55.965	55.917	56.013	0	672	88	1.2188909	0.052342653	1.2188909	248.8812	0	10.687668						138	5	3	NaN	NaN	NaN	0.84455	1	3297	3297		2.7852	0	1	14202			15608	6247	9048	9238	12346	12346					0.006458760179043566
LSAEPELTL	9	Unmodified	_LSAEPELTL_					0	0	0		ENST00000490692.1_1_1:55521765-55527101:+|nuORF;ENSG00000169174|ENST00000302118|PCSK9	ENST00000490692.1_1_1:55521765-55527101:+|nuORF	ENST00000490692.1_1_1:55521765-55527101:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5248038103001	1	972.524804	971.517527	2.2612	0.0021991	0.88167	0.00085745	3.1429	0.0030565	972.5253610460403	25.853	0.096565	25.841	25.793	25.89	-0.0116	255	43	1.4678029	0.024885178	1.4662834	298.12927	0	5.0545044						106	5	2	NaN	NaN	NaN	0.56671	1	7510	7510		6.8632	1.1691	1	9520.5			15609	4659	9049	9239	12347	12347					0.030629281121946406
LSAFTLELT	9	Unmodified	_LSAFTLELT_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5455392524001	1	994.545539	993.538263	2.2445	0.0022322	-0.93844	-0.00093333	1.306	0.0012989	994.5450444803439	30.077	0.096584	30.077	30.029	30.125	0	243	88	1.4749115	0.051490545	1.4749115	299.48022	0	10.455139						145	5	2	NaN	NaN	NaN	0.14301	1	8347	8347		29.598	4.6373	1	14495			15610	7408	9050	9240	12348	12348					0.04123518491860523
LSAGGAVP	8	Unmodified	_LSAGGAVP_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3722663342	1	671.372266	670.36499	1.3253	0.00088975	5.0629	0.0033991	6.3882	0.0042889	671.3754230436941	24.26	0.048279	24.248	24.248	24.296	-0.012749	645	148	1.2351195	0.08844113	1.2336	252.43872	0	18.075958						224	3	4	NaN	NaN	NaN	0.82332	1	2531	2531		6.0903	0	1	78647			15611	926	9051	9241	12349	12349					0.016621972260963958
LSAGLTVAL	9	Unmodified	_LSAGLTVAL_					0	0	0			REV__ENST00000420864.5_1_2:177134183-177134246:+|nuORF	REV__ENST00000420864.5_1_2:177134183-177134246:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.5138451935001	1	844.513845	843.506569	1.6389	0.0013841	0.014945	1.2621E-05	1.6538	0.0013967	844.5141800334862	30.68	0.16893	30.68	30.632	30.801	0	390	184	1.3876231	0.109140396	1.3876231	282.44116	0	22.214783						688	8	4	NaN	NaN	NaN	0.014046	1	5321	5321		80.639	6.3067	1	376880	+		15612	12108	9052	9242	12350	12350					0.07855570528568023
LSAGLTVAL	9	Unmodified						0	0	0			REV__ENST00000420864.5_1_2:177134183-177134246:+|nuORF	REV__ENST00000420864.5_1_2:177134183-177134246:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	844.513845	843.506569	1.6389	0.0013841	0.014945	1.2621E-05	1.6538	0.0013967	844.5141800334862	30.68	0.16893	30.68	30.632	30.801	0	390	184	1.3876231	0.109140396	1.3876231	282.44116		22.214783	0.0033941	0.00012261	0.00075972	NaN	80.639	688	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376880	+		15613	12108	9052	9242							0.07855570528568023
LSAIAGSS	8	Unmodified	_LSAIAGSS_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3777456426002	1	705.377746	704.370469	1.146	0.00080839	6.3577	0.0044845	7.5037	0.0052929	705.3819877281206	28.581	0.14477	28.581	28.556	28.701	0	633	52	1.2423272	0.030627847	1.2423272	253.6666	0	6.2538147						142	7	2	NaN	NaN	NaN	0.82797	1	3295	3295		5.4659	0	1	16354			15614	1564	9053	9243	12351	12351					0.006458760179157252
LSAIAGSS	8	Unmodified						0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	705.377746	704.370469	0.80694	0.00056919	5.9773	0.0042163	6.7842	0.0047854	705.3810110675176	28.604	0.12063	28.596	28.547	28.668	-0.0083504	633	55	1.2423272	0.03242767	1.2408078	253.6666		6.6213074	0.0075194	-0.00014781	-0.00075972	NaN	5.4659	165	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17826			15615	1564	9053	9243							0.006458760179157252
LSAQGAAS	8	Unmodified	_LSAQGAAS_					0	0	0		ENST00000314425.9_1_X:70469993-70470425:-|nuORF	ENST00000314425.9_1_X:70469993-70470425:-|nuORF	ENST00000314425.9_1_X:70469993-70470425:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3573445515001	1	704.357345	703.350068	1.3023	0.00091729	5.6133	0.0039538	6.9156	0.004871	704.3611346257887	30.27	0.26543	30.27	30.222	30.487	0	645	94	1.2351195	0.055904627	1.2351195	252.20186	0	11.415298						343	12	3	NaN	NaN	NaN	0.78967	1	3270	3270		10.605	2.3147	1	50474			15616	6464	9054	9244	12352	12352					-0.01347294641902863
LSAQHEKV	8	Unmodified	_LSAQHEKV_					0	0	0			REV__nc|ENSG00000138115|P10632-2|CYP2C8	REV__nc|ENSG00000138115|P10632-2|CYP2C8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	911.4945067349001	1	911.494507	910.48723	1.5226	0.0013878	-8.6823	-0.0079139	-7.1597	-0.0065261	911.4869179093876	34.95	0.19296	34.95	34.853	35.046	-4.5776E-05	1284	46	0.8468043	0.027662694	0.8452849	172.15779	0	5.6239014						180	9	3	NaN	NaN	NaN	0.84782	1	6113	6113		0.92586	0.5302	1	16693	+		15617	9714	9055	9245	12353	12353					0.02840614237675254
LSAQHEKV	8	Unmodified						0	0	0			REV__nc|ENSG00000138115|P10632-2|CYP2C8	REV__nc|ENSG00000138115|P10632-2|CYP2C8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	911.494507	910.48723	1.2254	0.001117	-8.3306	-0.0075933	-7.1051	-0.0064763	911.4867120847794	34.951	0.14459	34.951	34.879	35.023	0	1287	46	0.8449601	0.027665615	0.8449601	171.78287		5.6245117	0.00079572	0.00020647	-0.00016237	NaN	0.92586	160	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18597	+		15618	9714	9055	9245							0.02840614237675254
LSAQHEKV	8	Unmodified						0	0	0			REV__nc|ENSG00000138115|P10632-2|CYP2C8	REV__nc|ENSG00000138115|P10632-2|CYP2C8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	911.494507	910.48723	1.5226	0.0013878	-8.6823	-0.0079139	-7.1597	-0.0065261	911.4869179093876	34.95	0.19296	34.95	34.853	35.046	-4.5776E-05	1284	46	0.8468043	0.027662694	0.8452849	172.15779		5.6239014	-0.00079572	-0.00011415	0.00016237	NaN	0.92586	180	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16693	+		15619	9714	9055	9245							0.02840614237675254
LSASSHPA	8	Unmodified	_LSASSHPA_					0	0	0			REV__ENST00000376983.7_1_X:47500857-47509401:-|nuORF	REV__ENST00000376983.7_1_X:47500857-47509401:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3838936530001	1	769.383894	768.376617	2.3015	0.0017708	-5.1206	-0.0039397	-2.8191	-0.002169	769.380583380695	23.706	0.12045	23.693	23.621	23.741	-0.013048	519	43	1.310647	0.025119543	1.3091276	267.1911	0	5.1209106						85	6	2	NaN	NaN	NaN	0.84455	1	4262	4262		2.7852	1.1148	1	5127.9	+		15620	11941	9056	9246	12354	12354					-0.016836057505656754
LSASTSGK	8	Unmodified	_LSASTSGK_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.3992093662001	1	750.399209	749.391933	1.9465	0.0014606	6.1557	0.0046192	8.1021	0.0060798	750.4039161070264	23.152	0.12057	23.152	23.128	23.248	0	552	64	1.2908988	0.037737608	1.2908988	263.28204	0	7.696686						137	6	3	NaN	NaN	NaN	0.82797	1	4044	4044		5.4659	0	1	12688			15621	1679	9057	9247	12355	12355					0.007212610466240221
LSASTSGK	8	Unmodified						0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	750.399209	749.391933	1.9372	0.0014537	6.1411	0.0046082	8.0783	0.0060619	750.403669322179	23.175	0.12069	23.162	23.138	23.258	-0.013294	552	46	1.2908988	0.026941061	1.2893794	263.28204		5.49469	0.0050949	-6.3347E-06	-0.00075972	NaN	5.4659	115	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11079			15622	1679	9057	9247							0.007212610466240221
LSASVLPFI	9	Unmodified	_LSASVLPFI_					0	0	0		tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.78403592635	2	473.784036	945.553519	1.7083	0.00080936	-3.3473	-0.0015859	-1.639	-0.00077654	473.782170324611	22.79	0.072298	22.79	22.766	22.838	0	1305	28	0.83389086	0.016610146	0.83389086	338.87238	0	6.7499695						55	4	2	NaN	NaN	NaN	0.47587	1	6974	6974		10.605	3.0646	1	3712			15623	13810	9058	9248	12356	12356					0.07856430079709753
LSASVLPFI	9	Unmodified						0	0	0		tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	tr|U7SQN7|U7SQN7_FUSNUO-antigenpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01641PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.784036	945.553519	1.1357	0.00053808	-2.0855	-0.00098806	-0.94977	-0.00044998	473.78278392545485	22.838	0.048122	22.824	22.8	22.848	-0.01354	1308	37	0.83204526	0.022148132	0.8305259	338.12238		9.000427	0.016988	0.0006356	-0.0016825	NaN	10.605	65	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4374			15624	13810	9058	9248							0.07856430079709753
LSAVESAVL	9	Unmodified	_LSAVESAVL_					0	0	0		ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.5036744377002	1	888.503674	887.496398	1.6609	0.0014757	-1.2922	-0.0011481	0.36869	0.00032758	888.5032535466486	24.478	0.096525	24.465	24.441	24.537	-0.012747	393	49	1.3858368	0.028579712	1.3843174	281.85333	0	5.8125916						75	5	2	NaN	NaN	NaN	0.55027	1	5791	5791		7.5404	0	1	6715.4			15625	5700	9059	9249	12357	12357					0.04814962803345679
LSCICFHL	8	Unmodified	_LSCICFHL_					0	0	0			REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|0|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|7	REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|0|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.4477562382	1	935.447756	934.44048	1.855	0.0017353	-3.5378	-0.0033094	-1.6828	-0.0015741	935.4449032108733	28.676	0.048262	28.668	28.668	28.716	-0.0083504	297	61	1.4428991	0.03561461	1.4413797	293.23358	0	7.2377625						67	3	2	NaN	NaN	NaN	0.77489	1	6570	6570		12.588	1.4972	1	4597.4	+		15626	8222	9060	9250	12358	12358					-0.02936284909492315
LSCLSSYEEKR	11	Unmodified	_LSCLSSYEEKR_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.8834601769666	3	438.88346	1313.62855	1.3705	0.00060147	2.5384	0.0011141	3.9088	0.0017155	439.21921612507555	16.662	0.09598	16.662	16.59	16.686	0	1434	31	0.75435036	0.018540919	0.75435036	457.9693	0	11.256256						76	5	2	NaN	NaN	NaN	0.76803	1	19011	19011		0.7918	0	1	5280.2			15627	5674	9061	9251	12359	12359					-0.015718002420499033
LSDFLEVL	8	Unmodified	_LSDFLEVL_					0	0	0			REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	935.5084254646002	1	935.508425	934.501149	1.9435	0.0018181	0.29238	0.00027352	2.2359	0.0020917	935.5088712232013	34.3	0.33769	34.3	34.252	34.589	0	264	160	1.4624695	0.094353795	1.4624695	297.21048	0	19.17508						1010	15	5	NaN	NaN	NaN	0.09307	1	6714	6714		65.672	0	1	540380	+		15628	9554	9062	9252	12360	12360					0.03127846946108548
LSDFLEVL	8	Unmodified						0	0	0			REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	935.508425	934.501149	1.9435	0.0018181	0.29238	0.00027352	2.2359	0.0020917	935.5088712232013	34.3	0.33769	34.3	34.252	34.589	0	264	160	1.4624695	0.094353795	1.4624695	297.21048		19.17508	-0.10755	-2.695E-05	0.0016488	NaN	65.672	1010	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540380	+		15629	9554	9062	9252							0.03127846946108548
LSDFLEVL	8	Unmodified						0	0	0			REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	REV__RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	935.508425	934.501149	1.8021	0.0016859	1.1659	0.0010907	2.968	0.0027765	935.5115030609462	34.516	0.02412	34.515	34.515	34.539	-0.0006485	267	43	1.4606913	0.024893165	1.4591719	296.8491		5.058899	0.10755	0.00079019	-0.0016488	NaN	65.672	53	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5672.6	+		15630	9554	9062	9252							0.03127846946108548
LSDLPYIYRFS	11	Unmodified	_LSDLPYIYRFS_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5	REV__ENSG00000106804|ENST00000223642|C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.5748439173333	3	458.574844	1372.7027	1.5317	0.00070238	0.79519	0.00036466	2.3269	0.001067	458.5755765517874	25.274	0.24124	25.262	25.165	25.407	-0.012011	1389	76	0.7821392	0.046274483	0.78061974	474.62753	0	28.080872						431	11	5	NaN	NaN	NaN	0.47586	1	18894	18894		14.176	3.354	1	115890	+		15631	9000	9063	9253	12361	12361					0.03125910911785468
LSDRWAPPK	9	Unmodified	_LSDRWAPPK_					0	0	0		ENST00000573441.1_1_17:79096339-79098810:-|nuORF	ENST00000573441.1_1_17:79096339-79098810:-|nuORF	ENST00000573441.1_1_17:79096339-79098810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.19781933316665	3	357.197819	1068.57163	1.904	0.0006801	4.7255	0.0016879	6.6295	0.002368	357.2000366872243	16.782	0.095966	16.782	16.734	16.83	0	1464	49	0.73579943	0.029704094	0.73579943	447.76974	0	18.076416						64	5	2	NaN	NaN	NaN	0.63698	1	11504	11504		2.1026	0	1	4179.1			15632	7650	9064	9254	12362	12362					0.04008565054414248
LSEANSAEF	9	Unmodified	_LSEANSAEF_					0	0	0		ENST00000592782.5_1_17:43184347-43184791:+|nuORF	ENST00000592782.5_1_17:43184347-43184791:+|nuORF	ENST00000592782.5_1_17:43184347-43184791:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.4367170845001	1	967.436717	966.429441	1.5962	0.0015442	-1.8925	-0.0018308	-0.29629	-0.00028664	967.4344446750732	20.309	0.14425	20.309	20.261	20.405	0	348	52	1.412609	0.030319095	1.412609	286.93982	0	6.158661						133	7	2	NaN	NaN	NaN	0.12866	1	7519	7519		31.675	9.5491	1	11269			15633	7740	9065	9255	12363	12363					-0.05511692478421537
LSECAGTEAL	10	Unmodified	_LSECAGTEAL_					0	0	0			REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4557379671002	1	993.455738	992.448462	1.9295	0.0019168	6.8694	0.0068245	8.7989	0.0087413	993.4627345228027	17.114	0.19193	17.1	17.076	17.268	-0.013569	324	94	1.42687	0.055199742	1.4253505	289.72977	0	11.208435						341	9	3	NaN	NaN	NaN	0.25724	1	8135	8135		30.61	10.161	1	32240	+		15634	12764	9066	9256	12364	12364					-0.04806479179012513
LSECAGTEAL	10	Unmodified						0	0	0			REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	993.455738	992.448462	2.2665	0.0022517	7.3072	0.0072593	9.5737	0.009511	993.4625104950161	17.117	0.19202	17.117	17.093	17.285	0	327	88	1.425088	0.051643968	1.425088	289.36792		10.48642	0.0084775	0.00013803	-0.00013126	NaN	30.61	361	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37148	+		15635	12764	9066	9256							-0.04806479179012513
LSECAGTEAL	10	Unmodified						0	0	0			REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	REV__ENST00000555545.1_1_14:61201528-61201564:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	993.455738	992.448462	1.9295	0.0019168	6.8694	0.0068245	8.7989	0.0087413	993.4627345228027	17.114	0.19193	17.1	17.076	17.268	-0.013569	324	94	1.42687	0.055199742	1.4253505	289.72977		11.208435	-0.0084775	-0.00029685	0.00013126	NaN	30.61	341	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32240	+		15636	12764	9066	9256							-0.04806479179012513
LSEGCIGF	8	Unmodified	_LSEGCIGF_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	825.381116461	1	825.381116	824.37384	1.212	0.0010004	-4.4453	-0.003669	-3.2332	-0.0026687	825.3764574520176	30.8	0.14478	30.794	30.746	30.891	-0.0057545	534	67	1.3016734	0.039473414	1.300154	265.0453	0	8.037537						178	7	2	NaN	NaN	NaN	0.80071	1	4960	4960		9.1232	0	1	11789	+		15637	9548	9067	9257	12365	12365					-0.0453719719973833
LSESFVPKS	9	Unmodified	_LSESFVPKS_					0	0	0			REV__ENSG00000126953|ENST00000372902|TIMM8A	REV__ENSG00000126953|ENST00000372902|TIMM8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.5251381613001	1	993.525138	992.517862	1.9446	0.001932	-4.0501	-0.0040239	-2.1056	-0.0020919	993.5255499883011	27.543	0.14481	27.543	27.471	27.615	0	186	103	1.5086359	0.06032026	1.5086359	306.3323	0	12.248199						385	7	3	NaN	NaN	NaN	0.04947	1	8317	8317		47.136	5.3513	1	54768	+		15638	9429	9068	9258	12366	12366					0.02130347832053303
LSESFVPKS	9	Unmodified						0	0	0			REV__ENSG00000126953|ENST00000372902|TIMM8A	REV__ENSG00000126953|ENST00000372902|TIMM8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	993.525138	992.517862	1.9446	0.001932	-4.0501	-0.0040239	-2.1056	-0.0020919	993.5255499883011	27.543	0.14481	27.543	27.471	27.615	0	186	103	1.5086359	0.06032026	1.5086359	306.3323		12.248199	-0.0068991	0.00015361	-0.00012683	NaN	47.136	385	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54768	+		15639	9429	9068	9258							0.02130347832053303
LSESFVPKS	9	Unmodified						0	0	0			REV__ENSG00000126953|ENST00000372902|TIMM8A	REV__ENSG00000126953|ENST00000372902|TIMM8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	993.525138	992.517862	1.3652	0.0013563	-4.3837	-0.0043553	-3.0185	-0.002999	993.5248663672675	27.566	0.16892	27.557	27.46	27.629	-0.009552	183	94	1.510409	0.0549891	1.5088896	306.69232		11.16568	0.0068991	-0.00017781	0.00012683	NaN	47.136	349	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48813	+		15640	9429	9068	9258							0.02130347832053303
LSESTGAKPS	10	Unmodified	_LSESTGAKPS_					0	0	0			REV__ENST00000452793.1_1_1:2487194-2487890:-|nuORF	REV__ENST00000452793.1_1_1:2487194-2487890:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.7509213905	2	488.750921	975.48729	1.8412	0.00089988	-2.0026	-0.00097876	-0.16139	-7.8877E-05	488.7499815442526	23.199	0.12065	23.186	23.162	23.283	-0.013294	1326	31	0.8209676	0.018466711	0.81944823	333.474	0	7.501129						77	6	2	NaN	NaN	NaN	0.72631	1	7599	7599		6.2502	0.55606	1	6090.5	+		15641	12235	9069	9259	12367	12367					-0.0014343055298695617
LSEYKLSLL	9	Unmodified	_LSEYKLSLL_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.3131575065502	2	533.313158	1064.61176	1.0404	0.00055484	-8.8998	-0.0047464	-7.8594	-0.0041915	533.3088821212776	27.084	0.33784	27.074	27.025	27.363	-0.010124	1224	64	0.883646	0.038644075	0.88212657	358.51572	0	15.678833						474	15	5	NaN	NaN	NaN	0.030696	1	11082	11082		58.2	2.706	1	213380	+		15642	8912	9070	9260	12368	12368					0.0820406693435416
LSEYKLSLL	9	Unmodified						0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	533.313158	1064.61176	1.0404	0.00055484	-8.8998	-0.0047464	-7.8594	-0.0041915	533.3088821212776	27.084	0.33784	27.074	27.025	27.363	-0.010124	1224	64	0.883646	0.038644075	0.88212657	358.51572		15.678833	0.0066295	0.00060346	-0.00075972	NaN	58.2	474	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213380	+		15643	8912	9070	9260							0.0820406693435416
LSFAGKHYAK	10	Unmodified	_LSFAGKHYAK_					0	0	0			REV__tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1	REV__tr|U7SK88|U7SK88_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02141PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.30874083065	2	561.308741	1120.60293	1.3176	0.00073959	-6.4418	-0.0036159	-5.1242	-0.0028763	561.3055468776042	14.476	0.11981	14.465	14.417	14.537	-0.011218	1194	40	0.902037	0.023896694	0.9005176	365.7437	0	9.6892395						108	6	3	NaN	NaN	NaN	0.64158	1	13309	13309		12.049	3.0867	1	10145	+		15644	13412	9071	9261	12369	12369					0.0474513808849224
LSFLSECVL	9	Unmodified	_LSFLSECVL_					0	0	0			REV__ENST00000256495.3_1_3:5025736-5025934:+|nuORF	REV__ENST00000256495.3_1_3:5025736-5025934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.76498589344993	2	505.764986	1009.51542	1.735	0.00087751	-7.7193	-0.0039042	-5.9843	-0.0030266	505.7606992451414	17.882	0.14394	17.868	17.796	17.94	-0.013786	1299	79	0.8375814	0.04799795	0.83606195	340.063	0	19.487427						258	7	3	NaN	NaN	NaN	0.39244	1	8786	8786		14.042	3.4366	1	48374	+		15645	11524	9072	9262	12370	12370					0.01104176102717247
LSFWYHLH	8	Unmodified	_LSFWYHLH_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139751390-139753468:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7770765615	2	551.777077	1101.5396	1.0012	0.00055241	-3.8091	-0.0021018	-2.808	-0.0015494	552.2758196960147	32.393	0.072392	32.389	32.341	32.413	-0.0037613	1227	46	0.88180584	0.027605891	0.8802864	357.61584	0	11.195557						100	4	3	NaN	NaN	NaN	0.82332	1	12568	12568		6.0903	0.62448	1	7874.8			15646	5094	9073	9263	12371	12371					-0.0071080262873692845
LSFWYHLH	8	Unmodified	_LSFWYHLH_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139751390-139753468:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7770765615	2	551.777077	1101.5396	0.91785	0.00050645	3.1424	0.0017339	4.0602	0.0022403	551.7794721349766	32.513	0.1689	32.51	32.438	32.607	-0.0031052	1206	61	0.894683	0.036793947	0.89316356	362.83817	0	14.921783						196	8	3	NaN	NaN	NaN	0.82332	1	12570	12570		6.0903	1.1806	1	12621			15647	5094	9073	9263	12372	12372					-0.0071080262873692845
LSGACCDGD	9	Unmodified	_LSGACCDGD_					0	0	0		nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	nc|ENSG00000184916|Q9Y219-2|JAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.2862297977999	1	840.28623	839.278953	2.4985	0.0020995	-10.26	-0.008621	-7.761	-0.0065215	840.2766700403731	20.309	0.048134	20.295	20.271	20.319	-0.014141	1011	31	1.0137935	0.018262625	1.012274	206.36743	0	3.7175293						35	3	2	NaN	NaN	NaN	0.66196	1	5126	5126		2.4615	1.0219	1	1933.6			15648	5376	9074	9264	12373	12373					-0.14711498733242934
LSGAGAGT	8	Unmodified	_LSGAGAGT_					0	0	0			REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.16375361515003	2	317.163754	632.312954	1.2968	0.00041131	4.8666	0.0015435	6.1635	0.0019548	317.1651136221829	35.215	0.26532	35.215	35.167	35.432	-4.5776E-05	1518	64	0.7023569	0.0390566	0.70083743	287.43668	0	15.983734						305	12	3	NaN	NaN	NaN	0.84455	1	1453	1453		2.7852	0	1	63794	+		15649	9899	9075	9265	12374	12374					-0.017909661876615246
LSGAGAGT	8	Unmodified						0	0	0			REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.163754	632.312954	0.88121	0.00027949	4.733	0.0015011	5.6142	0.0017806	317.16542588461357	35.217	0.26541	35.217	35.168	35.434	0	1518	67	0.7023569	0.040914237	0.7023569	287.43668		16.743958	0.00071841	-4.7503E-05	0.00075972	NaN	2.7852	332	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56977	+		15650	9899	9075	9265							-0.017909661876615246
LSGAGAGT	8	Unmodified						0	0	0			REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	REV__nc|ENSG00000144455|Q8NBK3-4|SUMF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	317.163754	632.312954	1.2968	0.00041131	4.8666	0.0015435	6.1635	0.0019548	317.1651136221829	35.215	0.26532	35.215	35.167	35.432	-4.5776E-05	1518	64	0.7023569	0.0390566	0.70083743	287.43668		15.983734	-0.00071841	3.7261E-05	-0.00075972	NaN	2.7852	305	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63794	+		15651	9899	9075	9265							-0.017909661876615246
LSGDALVAI	9	Unmodified	_LSGDALVAI_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4931097514001	1	858.49311	857.485833	1.1982	0.0010286	0.21903	0.00018803	1.4172	0.0012167	858.493622144267	26.504	0.12064	26.494	26.47	26.59	-0.010645	414	100	1.3733286	0.059018016	1.3718091	279.45856	0	12.009552						250	6	3	NaN	NaN	NaN	0.043119	1	5371	5371		49.833	13.246	1	34197	+		15652	10738	9076	9266	12375	12375					0.05138980148910832
LSGFVVPM	8	Unmodified	_LSGFVVPM_					0	0	0			REV__ENST00000466325.1_1_X:153581080-153581464:-|nuORF	REV__ENST00000466325.1_1_X:153581080-153581464:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.23058197010005	2	425.230582	848.446611	1.2191	0.0005184	2.205	0.00093764	3.4241	0.001456	425.2311004551774	14.885	0.1201	14.885	14.813	14.933	0	1404	37	0.77288127	0.022225022	0.77288127	314.59402	0	9.046478						95	6	2	NaN	NaN	NaN	0.84651	1	5365	5365		1.6704	0	1	9682	+		15653	12302	9077	9267	12376	12376					0.016325565936881503
LSGGGQGG	8	Unmodified	_LSGGGQGG_					0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.65355306960004	2	316.653553	631.292553	1.3477	0.00042674	4.7101	0.0014915	6.0577	0.0019182	316.6557696036093	41.257	0.31266	41.257	41.089	41.401	0	1536	124	0.69119483	0.07624513	0.69119483	282.8783	0	31.204071						814	14	3	NaN	NaN	NaN	0.84756	1	1506	1506		1.072	0	1	133310	+		15654	13200	9078	9268	12377	12377					-0.03784136847468744
LSGGGQGG	8	Unmodified						0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	316.653553	631.292553	1.3477	0.00042674	4.7101	0.0014915	6.0577	0.0019182	316.6557696036093	41.257	0.31266	41.257	41.089	41.401	0	1536	124	0.69119483	0.07624513	0.69119483	282.8783		31.204071	-0.039469	-2.7762E-05	-0.0001707	NaN	1.072	814	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133310	+		15655	13200	9078	9268							-0.03784136847468744
LSGGGQGG	8	Unmodified						0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	316.653553	631.292553	1.2126	0.00038396	4.8017	0.0015205	6.0142	0.0019044	316.6554181067001	41.328	0.096302	41.336	41.288	41.384	0.0082626	1533	127	0.6930556	0.07807511	0.6915362	283.63986		31.953003	0.039469	3.0258E-05	0.0001707	NaN	1.072	287	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53547	+		15656	13200	9078	9268							-0.03784136847468744
LSGIELSYG	9	Unmodified	_LSGIELSYG_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-2|E2F7	REV__nc|ENSG00000165891|Q96AV8-2|E2F7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.74510773110006	2	469.745108	937.475663	0.11674	5.484E-05	2.0573	0.00096643	2.1741	0.0010213	469.7459869575355	30.993	0.21724	30.988	30.94	31.157	-0.0050716	1362	43	0.79879075	0.025887072	0.7972713	324.64862	0	10.521149						185	10	3	NaN	NaN	NaN	0.36492	1	6629	6629		15.175	0	1	26031	+		15657	10404	9079	9269	12378	12378					0.0044237242368581065
LSGPPETGTS	10	Unmodified	_LSGPPETGTS_					0	0	0			REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.22982180765	2	473.229822	944.445091	0.66131	0.00031295	9.2177	0.0043621	9.879	0.0046751	473.2342327029506	34.202	0.048275	34.201	34.177	34.225	-0.0012474	1524	28	0.698637	0.01674217	0.69711757	283.9133	0	6.803711						48	3	2	NaN	NaN	NaN	0.73444	1	6788	6788		5.6942	0.78442	1	4663	+		15658	12777	9080	9270	12379	12379					-0.029354059613751815
LSGPPETGTS	10	Unmodified						0	0	0			REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.229822	944.445091	1.0103	0.00047812	7.2007	0.0034076	8.2111	0.0038857	473.23277865142364	34.203	0.048241	34.203	34.179	34.228	0	1524	31	0.698637	0.018603384	0.698637	283.91333		7.560089	0.0011668	-0.001125	0.00075972	NaN	5.6942	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4410.5	+		15659	12777	9080	9270							-0.029354059613751815
LSGPPETGTS	10	Unmodified						0	0	0			REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	REV__ENST00000558870.1_1_15:77324662-77328157:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.229822	944.445091	0.66131	0.00031295	9.2177	0.0043621	9.879	0.0046751	473.2342327029506	34.202	0.048275	34.201	34.177	34.225	-0.0012474	1524	28	0.698637	0.01674217	0.69711757	283.9133		6.803711	-0.0011668	0.00078399	-0.00075972	NaN	5.6942	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4663	+		15660	12777	9080	9270							-0.029354059613751815
LSGPRFAP	8	Unmodified	_LSGPRFAP_					0	0	0			REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.73742008475	2	422.73742	843.460287	1.2148	0.00051352	-2.9983	-0.0012675	-1.7836	-0.00075398	422.73579782821014	20.862	0.07239	20.862	20.838	20.911	0	1419	34	0.76361835	0.020385087	0.76361835	310.8529	0	8.29834						84	4	3	NaN	NaN	NaN	0.81756	1	5309	5309		6.8632	0	1	7052.8	+		15661	12048	9081	9271	12380	12380					0.03229550417131577
LSGPRFAP	8	Unmodified						0	0	0			REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	422.73742	843.460287	1.2148	0.00051352	-2.9983	-0.0012675	-1.7836	-0.00075398	422.73579782821014	20.862	0.07239	20.862	20.838	20.911	0	1419	34	0.76361835	0.020385087	0.76361835	310.8529		8.29834	-0.017162	-0.00046456	0.0016863	NaN	6.8632	84	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7052.8	+		15662	12048	9081	9271							0.03229550417131577
LSGPRFAP	8	Unmodified						0	0	0			REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	REV__ENST00000405486.5_2_22:41641775-41642279:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	422.73742	843.460287	1.0075	0.00042592	-1.4528	-0.00061415	-0.44526	-0.00018823	422.7374554936667	20.911	0.048246	20.897	20.873	20.921	-0.014086	1422	43	0.7617651	0.02594322	0.7602457	310.0985		10.560913	0.017162	0.00084213	-0.0016863	NaN	6.8632	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5263.9	+		15663	12048	9081	9271							0.03229550417131577
LSGVEVVVV	9	Unmodified	_LSGVEVVVV_					0	0	0			REV__ENST00000481254.1_1_9:35075210-35075499:-|nuORF	REV__ENST00000481254.1_1_9:35075210-35075499:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440002	1	900.54006	899.532783	2.4765	0.0022302	0.16681	0.00015022	2.6434	0.0023804	900.5400257283521	30.993	0.26548	30.988	30.915	31.181	-0.0050716	330	325	1.4233059	0.19322312	1.4217864	289.41467	0	39.289948						1559	12	5	NaN	NaN	NaN	0.028349	1	5960	5960		61.271	2.6721	1	1889500	+		15664	12384	9082	9272	12381	12381					0.07899839700053235
LSHCNLRL	8	Unmodified	_LSHCNLRL_					0	0	0		ENST00000560015.1_1_15:83698515-83710507:-|nuORF	ENST00000560015.1_1_15:83698515-83710507:-|nuORF	ENST00000560015.1_1_15:83698515-83710507:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.26073639304997	2	478.260736	954.50692	1.6759	0.00080152	-3.0103	-0.0014397	-1.3343	-0.00063817	478.25934906642937	55.677	0.096157	55.677	55.604	55.701	0	1356	61	0.8024889	0.036997557	0.8024889	326.06757	0	15.032867						60	5	2	NaN	NaN	NaN	0.81251	1	7196	7196		7.5404	0	1	4832.9			15665	7592	9083	9273	12382	12382					0.02784666976765493
LSHEESVSF	9	Unmodified	_LSHEESVSF_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7430963584001	2	517.743096	1033.47164	2.3377	0.0012103	-2.0897	-0.0010819	0.24801	0.00012841	517.7417069293399	17.573	0.23966	17.573	17.525	17.765	0	1266	88	0.85786515	0.05348122	0.85786515	348.1897	0	21.70691						567	11	3	NaN	NaN	NaN	0.0094682	1	9910	9910		93.472	56.885	1	130550			15666	1569	9084	9274	12383	12383					-0.04375717070047358
LSHEESVSF	9	Unmodified	_LSHEESVSF_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7430963584001	2	517.743096	1033.47164	1.8841	0.00097547	-0.12853	-6.6547E-05	1.7555	0.00090892	517.7428302152117	17.594	0.23973	17.58	17.532	17.772	-0.013567	1266	91	0.85786515	0.05532241	0.8563457	348.1897	0	22.454193						587	11	4	NaN	NaN	NaN	0.014046	1	9705	9705		80.639	48.186	1	130830			15667	1569	9084	9274	12384	12384					-0.04375717070047358
LSHSKMLDK	9	Unmodified	_LSHSKMLDK_					0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5662914695	1	1058.56629	1057.55902	2.1432	0.0022687	2.1273	0.0022519	4.2704	0.0045205	1058.5688680612634	34.106	0.31379	34.105	33.984	34.298	-0.0012474	72	292	1.5758814	0.17193604	1.5743619	319.71692	0	34.88263						1441	14	4	NaN	NaN	NaN	0.27608	1	10766	10766		20.449	1.3303	1	1149300			15668	2835	9085	9275	12385	12385					0.03253785599872572
LSHSTSLV	8	Unmodified	_LSHSTSLV_					0	0	0			REV__nc|ENSG00000162711|Q96P20-4|NLRP3	REV__nc|ENSG00000162711|Q96P20-4|NLRP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.4570585961001	1	843.457059	842.449782	0.89087	0.00075141	2.8436	0.0023985	3.7345	0.0031499	843.4597279927945	30.076	0.16894	30.07	30.021	30.19	-0.0064087	423	46	1.3679651	0.026823401	1.3664457	278.4455	0	5.459839						97	8	2	NaN	NaN	NaN	0.65075	1	5169	5169		22.126	1.5709	1	8033.6	+		15669	10251	9086	9276	12386	12386					0.02225522972048566
LSIDRFRLR	9	Unmodified	_LSIDRFRLR_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.57176815656663	3	392.571768	1174.69348	1.4827	0.00058205	-0.19177	-7.5282E-05	1.2909	0.00050676	392.5717050095955	16.59	0.071907	16.59	16.566	16.638	0	1476	31	0.72837335	0.018571138	0.72837335	442.7416	0	11.288452						90	4	3	NaN	NaN	NaN	0.53237	1	15645	15645		8.2775	0.68994	1	8273.9			15670	4717	9087	9277	12387	12387					0.11311607136781276
LSIDRFRLR	9	Unmodified						0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	392.571768	1174.69348	2.0596	0.00080854	-1.561	-0.00061279	0.49865	0.00019575	392.5714145070466	16.778	0.11982	16.765	16.717	16.837	-0.013294	1479	25	0.72651637	0.014856935	0.7249969	441.61282		9.030762	0.087694	-0.00096426	-0.0016882	NaN	8.2775	68	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4750.3			15671	4717	9087	9277							0.11311607136781276
LSIGNCCN	8	Unmodified	_LSIGNCCN_					0	0	0			REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.1754807819	2	412.175481	822.336409	1.5533	0.00064024	-2.4318	-0.0010023	-0.87846	-0.00036208	412.17496183548946	34.758	0.36171	34.758	34.662	35.023	0	1443	55	0.7487872	0.03338456	0.7487872	304.94067	0	13.595734						572	16	5	NaN	NaN	NaN	0.82797	1	5042	5042		5.4659	0	1	279990	+		15672	11617	9088	9278	12388	12388					-0.08186611737005478
LSIGNCCN	8	Unmodified	_LSIGNCCN_					0	0	0			REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.1754807819	2	412.175481	822.336409	1.2679	0.0005226	-1.5137	-0.00062391	-0.24579	-0.00010131	412.17525471374734	35.119	0.60303	35.119	34.829	35.432	-4.5776E-05	1440	55	0.7506418	0.03338456	0.7491224	305.69595	0	13.595734						686	26	3	NaN	NaN	NaN	0.81251	1	4930	4930		7.5404	0	1	306450	+		15673	11617	9088	9278	12389	12389					-0.08186611737005478
LSIGNCCN	8	Unmodified						0	0	0			REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	412.175481	822.336409	1.5533	0.00064024	-2.4318	-0.0010023	-0.87846	-0.00036208	412.17496183548946	34.758	0.36171	34.758	34.662	35.023	0	1443	55	0.7487872	0.03338456	0.7487872	304.94067		13.595734	-0.18015	-0.00044677	-0.00016758	NaN	7.5404	572	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279990	+		15674	11617	9088	9278							-0.08186611737005478
LSIGNCCN	8	Unmodified						0	0	0			REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	412.175481	822.336409	1.2679	0.0005226	-1.5137	-0.00062391	-0.24579	-0.00010131	412.17525471374734	35.119	0.60303	35.119	34.829	35.432	-4.5776E-05	1440	55	0.7506418	0.03338456	0.7491224	305.69595		13.595734	0.18015	0.00031004	0.00016758	NaN	7.5404	686	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306450	+		15675	11617	9088	9278							-0.08186611737005478
LSIITLVVL	9	Unmodified	_LSIITLVVL_					0	0	0			REV__PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	REV__PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.6546957713002	1	970.654696	969.647419	1.5024	0.0014583	-0.84767	-0.0008228	0.65469	0.00063547	970.6524975409751	35.89	0.072239	35.891	35.867	35.94	0.0011024	180	43	1.5121819	0.024819255	1.5106624	307.1515	0	5.04126						62	4	2	NaN	NaN	NaN	0.55027	1	7461	7461		7.5404	0	1	4384.1	+		15676	9158	9089	9279	12390	12390					0.161381491820066
LSKNEAPEGN	10	Unmodified	_LSKNEAPEGN_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7592777388501	2	529.759278	1057.504	1.7853	0.0009458	7.9533	0.0042133	9.7386	0.0051591	529.7614996837564	26.07	0.12067	26.059	26.011	26.131	-0.011137	1197	127	0.9001988	0.07732588	0.8986794	365.26285	0	31.37558						400	6	4	NaN	NaN	NaN	0.44412	1	10758	10758		21.771	2.6075	1	93761			15677	2457	9090	9280	12391	12391					-0.022449296670401964
LSKWDLPV	8	Unmodified	_LSKWDLPV_					0	0	0		ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.27383538079994	2	479.273835	956.533118	1.3772	0.00066004	-4.077	-0.001954	-2.6999	-0.001294	479.2718587880292	37.624	0.1204	37.627	37.555	37.675	0.0028229	1290	34	0.84311575	0.020290375	0.8415963	342.5648	0	8.244141						109	6	2	NaN	NaN	NaN	0.7718	1	7114	7114		13.003	0.95414	1	10907			15678	3323	9091	9281	12392	12392					0.053112594198864826
LSLASCPV	8	Unmodified	_LSLASCPV_					0	0	0		SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4175019673	1	789.417502	788.410226	1.0235	0.00080797	0.97059	0.0007662	1.9941	0.0015742	789.4183978494418	33.793	0.16887	33.793	33.745	33.914	0	480	46	1.3339561	0.026872039	1.3339561	271.82166	0	5.4757385						126	8	2	NaN	NaN	NaN	0.79379	1	4607	4607		10.052	0	1	12288			15679	13706	9092	9282	12393	12393					0.007556796969652169
LSLDHISPWT	10	Unmodified	_LSLDHISPWT_					0	0	0		ENST00000554980.5_1_14:76424767-76425082:-|nuORF	ENST00000554980.5_1_14:76424767-76425082:-|nuORF	ENST00000554980.5_1_14:76424767-76425082:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.80348827725	2	584.803488	1167.59242	1.1718	0.00068527	-5.8721	-0.003434	-4.7003	-0.0027488	584.7996619249574	29.111	0.24135	29.103	29.007	29.248	-0.0077209	1146	94	0.93142134	0.05694139	0.9299019	377.47327	0	23.076416						284	11	3	NaN	NaN	NaN	0.65442	1	14866	14866		11.17	0	1	36308			15680	7568	9093	9283	12394	12394					0.01533110643413238
LSLVILCFFPF	11	Unmodified	_LSLVILCFFPF_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.8645029728	2	649.864503	1297.71445	0.98812	0.00064215	-9.2969	-0.0060417	-8.3088	-0.0053996	649.8586316911758	28.749	0.16891	28.74	28.668	28.837	-0.0083504	1098	55	0.960755	0.032968342	0.9592356	388.90506	0	13.345306						201	8	3	NaN	NaN	NaN	0.40602	1	17905	17905		21.835	0	1	20067			15681	813	9094	9284	12395	12395					0.07750436401420302
LSLWPLVIEVA	11	Unmodified	_LSLWPLVIEVA_					0	0	0			REV__ENST00000430411.1_1_22:37882241-37882409:-|nuORF	REV__ENST00000430411.1_1_22:37882241-37882409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.3710067364501	2	620.371007	1238.72746	1.1953	0.00074154	-1.6008	-0.00099308	-0.40547	-0.00025154	620.3697859844223	32.49	0.048256	32.49	32.49	32.539	0	1080	46	0.9717421	0.027463317	0.9717421	393.5497	0	11.122467						45	3	2	NaN	NaN	NaN	0.77843	1	17500	17500		0.51604	0.07021	1	2975	+		15682	12153	9095	9285	12396	12396					0.1176459078519656
LSMTLPSML	9	Unmodified	_LSMTLPSML_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5155014524001	1	992.515501	991.508225	2.1663	0.00215	-7.6434	-0.0075862	-5.4772	-0.0054362	992.5077211137728	30.198	0.1448	30.198	30.125	30.27	0	228	49	1.4837929	0.028416157	1.4837929	301.29208	0	5.77005						112	7	2	NaN	NaN	NaN	0.58159	1	8263	8263		6.2502	0.78436	1	7700.5	+		15683	11006	9096	9286	12397	12397					0.012131202306704836
LSPDDLHQQVM	11	Unmodified	_LSPDDLHQQVM_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8084446569	2	641.808445	1281.60234	2.1882	0.0014044	-0.235	-0.00015083	1.9532	0.0012536	641.8088381589488	29.908	0.24132	29.908	29.811	30.053	0	1131	73	0.94059354	0.044009984	0.94059354	380.79425	0	17.8172						457	11	5	NaN	NaN	NaN	0.57257	1	18448	18448		15.822	1.3969	1	94259	+		15684	10014	9097	9287	12398	12398					-0.027200694135217418
LSPDIIMNL	9	Unmodified	_LSPDIIMNL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.27826044420004	2	508.27826	1014.54197	1.1748	0.00059712	-4.2845	-0.0021777	-3.1098	-0.0015806	508.27473839837	20.622	0.28903	20.608	20.463	20.752	-0.014088	1308	79	0.83204526	0.047971964	0.8305259	337.7928	0	19.475586						536	13	5	NaN	NaN	NaN	0.19268	1	8982	8982		25.801	0	1	128860			15685	3387	9098	9288	12399	12399					0.03527864994077845
LSPDLALQ	8	Unmodified	_LSPDLALQ_					0	0	0			REV__ENSG00000168209|ENST00000307365|DDIT4	REV__ENSG00000168209|ENST00000307365|DDIT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4774596871999	1	856.47746	855.470183	1.9385	0.0016603	-1.3276	-0.0011371	0.61091	0.00052323	856.4771279349275	23.923	0.048166	23.91	23.886	23.934	-0.013048	408	43	1.3769034	0.025023222	1.375384	280.1964	0	5.092163						57	3	2	NaN	NaN	NaN	0.57691	1	5335	5335		26.732	1.7706	1	4143.5	+		15686	10500	9099	9289	12400	12400					0.03666693631839735
LSPEEAHAL	9	Unmodified	_LSPEEAHAL_					0	0	0		ENST00000367201.7_1_1:204118971-204121014:-|nuORF	ENST00000367201.7_1_1:204118971-204121014:-|nuORF	ENST00000367201.7_1_1:204118971-204121014:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.489087006	1	966.489087	965.481811	1.4227	0.001375	0.90623	0.00087586	2.3289	0.0022509	966.4903245956893	20.887	0.1686	20.887	20.79	20.959	0	297	64	1.4428991	0.037377477	1.4428991	293.09662	0	7.592499						141	8	2	NaN	NaN	NaN	0.20577	1	7497	7497		24.961	0	1	12882			15687	6621	9100	9290	12401	12401					-0.002311093448156498
LSPPAVRLM	9	Unmodified	_LSPPAVRLM_					0	0	0			REV__ENST00000321944.8_1_19:39669319-39669562:+|nuORF	REV__ENST00000321944.8_1_19:39669319-39669562:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5706485659002	1	983.570649	982.563372	1.0237	0.0010069	-3.6052	-0.003546	-2.5815	-0.0025391	983.5654638715789	31.838	0.072395	31.833	31.809	31.881	-0.0044155	222	79	1.4873441	0.046171308	1.4858247	302.05087	0	9.376495						116	4	2	NaN	NaN	NaN	0.62619	1	7808	7808		4.4131	0.44458	1	11034	+		15688	11723	9101	9291	12402	12402					0.07139294813453034
LSQDLSVI	8	Unmodified	_LSQDLSVI_					0	0	0			REV__ENSG00000279000|ENST00000641238|OR10A6	REV__ENSG00000279000|ENST00000641238|OR10A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.74765042005	2	437.74765	873.480748	1.5902	0.00069611	-3.753	-0.0016429	-2.1628	-0.00094678	437.745856227204	16.994	0.11992	16.981	16.957	17.077	-0.013294	1383	55	0.7858409	0.03331226	0.7843215	319.7233	0	13.553223						92	6	2	NaN	NaN	NaN	0.79607	1	5582	5582		9.746	0.78402	1	7124.2	+		15689	11435	9102	9292	12403	12403					0.03894676286279264
LSQLGASAR	9	Unmodified	_LSQLGASAR_					0	0	0			REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF	REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.5054057722	1	902.505406	901.498129	1.6441	0.0014838	-4.0517	-0.0036567	-2.4076	-0.0021728	902.5020135409429	30.92	0.096561	30.915	30.843	30.94	-0.0050716	306	58	1.4375578	0.03384292	1.4360384	292.30307	0	6.881378						108	5	2	NaN	NaN	NaN	0.10945	1	5990	5990		34.454	1.0287	1	8502.7	+		15690	12076	9103	9293	12404	12404					0.04344016611935331
LSQQPEPEL	9	Unmodified	_LSQQPEPEL_					0	0	0			REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7665714547	2	520.766571	1039.51859	1.4983	0.00078028	-1.9065	-0.00099286	-0.40821	-0.00021258	520.7657275214794	20.814	0.21679	20.814	20.766	20.983	0	1302	115	0.8357362	0.07012051	0.8357362	339.1821	0	28.458282						511	10	3	NaN	NaN	NaN	0.022082	1	10189	10189		69.363	0	1	82917	+		15691	10484	9104	9294	12405	12405					0.0004114248110909102
LSQQPEPEL	9	Unmodified						0	0	0			REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.766571	1039.51859	1.4983	0.00078028	-1.9065	-0.00099286	-0.40821	-0.00021258	520.7657275214794	20.814	0.21679	20.814	20.766	20.983	0	1302	115	0.8357362	0.07012051	0.8357362	339.1821		28.458282	0.0068928	-0.00042898	0.0016824	NaN	69.363	511	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82917	+		15692	10484	9104	9294							0.0004114248110909102
LSRMWLPL	8	Unmodified	_LSRMWLPL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.29150520520005	2	508.291505	1014.56846	1.1063	0.00056233	7.4979	0.0038111	8.6042	0.0043734	508.29554072743696	20.742	0.024088	20.728	20.728	20.752	-0.014088	1302	49	0.8357362	0.029518008	0.8342168	339.29105	0	11.983673						53	2	2	NaN	NaN	NaN	0.84562	1	8991	8991		2.1763	0.47414	1	6389.7	+		15693	10154	9105	9295	12406	12406					0.06175598676065874
LSRMWLPL	8	Unmodified						0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.291505	1014.56846	1.5049	0.00076495	8.9692	0.004559	10.474	0.0053239	508.29574261225525	20.718	0.02413	20.718	20.718	20.742	0	1296	43	0.8394264	0.0258255	0.8394264	340.78915		10.484589	-0.005183	0.00040629	0.0026048	NaN	2.1763	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5977.3	+		15694	10154	9105	9295							0.06175598676065874
LSRMWLPL	8	Unmodified						0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.291505	1014.56846	1.1063	0.00056233	7.4979	0.0038111	8.6042	0.0043734	508.29554072743696	20.742	0.024088	20.728	20.728	20.752	-0.014088	1302	49	0.8357362	0.029518008	0.8342168	339.29105		11.983673	0.005183	-0.0010895	-0.0026048	NaN	2.1763	53	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6389.7	+		15695	10154	9105	9295							0.06175598676065874
LSSAAGKG	8	Unmodified	_LSSAAGKG_					0	0	0		ENST00000512127.5_1_4:169552810-169552978:+|nuORF	ENST00000512127.5_1_4:169552810-169552978:+|nuORF	ENST00000512127.5_1_4:169552810-169552978:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3780799936	1	690.37808	689.370804	1.1794	0.00081424	7.6282	0.0052664	8.8077	0.0060806	690.3832147863383	22.018	0.16858	22.004	21.98	22.149	-0.013895	639	55	1.2387238	0.03243816	1.2372043	253.03574	0	6.62619						155	8	2	NaN	NaN	NaN	0.84512	1	2955	2955		2.4615	1.0219	1	14019			15696	7359	9106	9296	12407	12407					0.01369295737754328
LSSAATTV	8	Unmodified	_LSSAATTV_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4039603930999	1	749.40396	748.396684	0.80659	0.00060446	-4.8133	-0.0036071	-4.0067	-0.0030026	749.3993453191615	33.552	0.14468	33.552	33.528	33.673	0	588	58	1.2693287	0.034169078	1.2693287	258.88904	0	6.9690247						103	7	2	NaN	NaN	NaN	0.84887	1	4027	4027		0.32989	0	1	6533.6	+		15697	11150	9107	9297	12408	12408					0.012421451893601443
LSSAAYHI	8	Unmodified	_LSSAAYHI_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.2268851881999	2	431.226885	860.439217	1.5891	0.00068527	-2.8952	-0.0012485	-1.3061	-0.00056321	431.2258681588027	23.345	0.048199	23.345	23.345	23.393	0	1320	106	0.824661	0.064637125	0.824661	335.5961	0	26.304108						119	3	2	NaN	NaN	NaN	0.84651	1	5537	5537		1.6704	0	1	11467	+		15698	8906	9108	9298	12409	12409					0.003415403175949905
LSSDDANVL	9	Unmodified	_LSSDDANVL_					0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4523671486999	1	933.452367	932.445091	1.0438	0.00097435	1.9776	0.001846	3.0214	0.0028203	933.4544043136025	20.911	0.14449	20.897	20.825	20.969	-0.014086	351	85	1.4108255	0.049971938	1.409306	286.7243	0	10.155884						246	7	3	NaN	NaN	NaN	0.089764	1	6512	6512		37.302	5.7413	1	25319			15699	3922	9109	9299	12410	12410					-0.023834059613932368
LSSDDANVL	9	Unmodified						0	0	0		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	933.452367	932.445091	1.5026	0.0014026	1.0861	0.0010138	2.5887	0.0024164	933.4542436848393	20.911	0.14455	20.911	20.838	20.983	0	354	82	1.4090419	0.048184633	1.4090419	286.36182		9.792633	0.0069701	-0.00037701	-0.00013212	NaN	37.302	217	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23641			15700	3922	9109	9299							-0.023834059613932368
LSSHAGPA	8	Unmodified	_LSSHAGPA_					0	0	0		ENST00000496534.1_1_3:9799225-9799321:-|nuORF	ENST00000496534.1_1_3:9799225-9799321:-|nuORF	ENST00000496534.1_1_3:9799225-9799321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.3733289667	1	739.373329	738.366053	1.4344	0.0010605	-5.0415	-0.0037276	-3.6072	-0.002667	739.3696294425193	27.156	0.21717	27.146	27.098	27.315	-0.010126	609	133	1.2567334	0.07915783	1.255214	256.38275	0	16.148773						652	10	3	NaN	NaN	NaN	0.82332	1	3815	3815		6.0903	0	1	95470			15701	7292	9110	9300	12411	12411					-0.013595884050118912
LSSILCCLDS	10	Unmodified	_LSSILCCLDS_					0	0	0			REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.4954942917998	1	1053.49549	1052.48822	1.8775	0.0019779	-2.9543	-0.0031124	-1.0768	-0.0011344	1053.4934250256022	34.252	0.1206	34.252	34.228	34.348	0	156	73	1.5263584	0.042511344	1.5263584	309.68887	0	8.625305						246	6	3	NaN	NaN	NaN	0.68669	1	10725	10725		8.962	0	1	36690	+		15702	10012	9111	9301	12412	12412					-0.035926754999763943
LSSLQHQLL	9	Unmodified	_LSSLQHQLL_					0	0	0			REV__nc|ENSG00000105737|Q16478-2|GRIK5	REV__nc|ENSG00000105737|Q16478-2|GRIK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.80074862305	2	519.800749	1037.58694	1.2557	0.00065271	2.1758	0.001131	3.4315	0.0017837	519.8023341398404	27.373	0.21718	27.363	27.291	27.508	-0.010126	1260	79	0.8615505	0.047878683	0.8600311	349.66727	0	19.431946						331	10	4	NaN	NaN	NaN	0.074859	1	9904	9904		39.459	3.4224	1	112080	+		15703	13101	9112	9302	12413	12413					0.06965431851608628
LSSLQHQLL	9	Unmodified						0	0	0			REV__nc|ENSG00000105737|Q16478-2|GRIK5	REV__nc|ENSG00000105737|Q16478-2|GRIK5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.800749	1037.58694	1.2557	0.00065271	2.1758	0.001131	3.4315	0.0017837	519.8023341398404	27.373	0.21718	27.363	27.291	27.508	-0.010126	1260	79	0.8615505	0.047878683	0.8600311	349.66727		19.431946	0.018691	0.00028654	-0.00075972	NaN	39.459	331	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112080	+		15704	13101	9112	9302							0.06965431851608628
LSSSAGGA	8	Unmodified	_LSSSAGGA_					0	0	0			REV__CON__P50446	REV__CON__P50446	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3151453858001	1	649.315145	648.307869	2.033	0.0013201	6.701	0.0043511	8.734	0.0056711	649.3195757999598	26.288	0.1448	26.288	26.239	26.384	0	705	103	1.1990347	0.061469197	1.1990347	245.23021	0	12.571854						187	7	2	NaN	NaN	NaN	0.8439	1	2009	2009		3.1533	0	1	18888	+	+	15705	8268	9113	9303	12414	12414					-0.030352700502817243
LSSSGSSL	8	Unmodified	_LSSSGSSL_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3675748868001	1	737.367575	736.360298	1.9112	0.0014093	3.3651	0.0024813	5.2763	0.0038906	737.371453914381	26.143	0.096548	26.143	26.094	26.191	0	609	52	1.2567334	0.030598402	1.2567334	256.39545	0	6.2425995						104	5	2	NaN	NaN	NaN	0.80692	1	3849	3849		8.2903	0	1	7884.7			15706	3396	9114	9304	12415	12415					-0.01842731707324674
LSSSIIVTL	9	Unmodified	_LSSSIIVTL_					0	0	0		ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	ENSG00000253910|ENST00000522605|PCDHGB2	ENSG00000253910|ENST00000522605|PCDHGB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5662746945001	1	932.566275	931.558998	1.2148	0.0011329	-0.6832	-0.00063713	0.53161	0.00049576	932.5667822107437	31.839	0.072388	31.839	31.815	31.887	0	267	55	1.4606913	0.032009006	1.4606913	296.86273	0	6.50531						82	4	2	NaN	NaN	NaN	0.29681	1	6644	6644		19.118	3.9429	1	11469			15707	6115	9115	9305	12416	12416					0.09048108871525073
LSTGGGLE	8	Unmodified	_LSTGGGLE_					0	0	0			REV__nc|ENSG00000138036|Q8TCX1-5|DYNC2LI1	REV__nc|ENSG00000138036|Q8TCX1-5|DYNC2LI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3726602647	1	733.37266	732.365384	1.4992	0.0010994	6.3597	0.004664	7.8588	0.0057635	733.3775603509	24.092	0.16887	24.079	24.031	24.199	-0.012749	612	52	1.2549332	0.030604959	1.2534138	256.0537	0	6.2445526						160	8	3	NaN	NaN	NaN	0.72043	1	3713	3713		17.78	0	1	17874	+		15708	9708	9116	9306	12417	12417					-0.011504278447091565
LSTKGCGG	8	Unmodified	_LSTKGCGG_					0	0	0			REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3501506836002	1	722.350151	721.342874	1.2886	0.00093084	4.1901	0.0030267	5.4787	0.0039576	722.3533232075346	36.589	0.28888	36.591	36.494	36.783	0.0016747	744	55	1.1755381	0.032556415	1.1740186	239.92142	0	6.6446075						261	13	3	NaN	NaN	NaN	0.84727	1	3535	3535		1.2418	0.84618	1	21440	+		15709	9776	9117	9307	12418	12418					-0.028943505139636727
LSTKGCGG	8	Unmodified						0	0	0			REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.350151	721.342874	1.269	0.00091666	6.2316	0.0045014	7.5006	0.005418	722.354527262221	36.591	0.12049	36.591	36.591	36.712	0	747	37	1.1737292	0.021706581	1.1737292	239.55223		4.4302063	0.0001529	0.0010272	-0.00014467	NaN	1.2418	71	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4251.5	+		15710	9776	9117	9307							-0.028943505139636727
LSTKGCGG	8	Unmodified						0	0	0			REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.350151	721.342874	1.2886	0.00093084	4.1901	0.0030267	5.4787	0.0039576	722.3533232075346	36.589	0.28888	36.591	36.494	36.783	0.0016747	744	55	1.1755381	0.032556415	1.1740186	239.92142		6.6446075	-0.0001529	-0.00044743	0.00014467	NaN	1.2418	261	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21440	+		15711	9776	9117	9307							-0.028943505139636727
LSTPQWKAELS	11	Unmodified	_LSTPQWKAELS_					0	0	0			REV__nc|ENSG00000135423|Q9UI32-2|GLS2	REV__nc|ENSG00000135423|Q9UI32-2|GLS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.3351525464001	2	630.335153	1258.65575	1.8324	0.001155	-7.1186	-0.0044871	-5.2862	-0.0033321	630.3298615441735	34.565	0.072369	34.565	34.541	34.614	0	1107	40	0.9552588	0.023827195	0.9552588	386.80658	0	9.648193						52	4	2	NaN	NaN	NaN	0.77059	1	17972	17972		1.8901	0.38472	1	3454.5	+		15712	13122	9118	9308	12419	12419					0.03677051360659789
LSTRPHIDKI	10	Unmodified	_LSTRPHIDKI_					0	0	0		ENST00000466762.1_1_3:137982955-138014731:+|nuORF;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000466762.1_1_3:137982955-138014731:+|nuORF	ENST00000466762.1_1_3:137982955-138014731:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.3458546184501	2	590.345855	1178.67716	1.697	0.0010018	-8.5898	-0.005071	-6.8928	-0.0040691	590.3400216588349	22.573	0.12059	22.573	22.525	22.645	0	1143	61	0.9332562	0.036702693	0.9332562	378.17535	0	14.872711						219	6	4	NaN	NaN	NaN	0.59391	1	15794	15794		15.311	1.3622	1	32791			15713	1941	9119	9309	12420	12420					0.09496481180030969
LSTSSGKG	8	Unmodified	_LSTSSGKG_					0	0	0		ENST00000372097.9_1_9:135931402-135931471:+|nuORF	ENST00000372097.9_1_9:135931402-135931471:+|nuORF	ENST00000372097.9_1_9:135931402-135931471:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.3835593020002	1	736.383559	735.376283	1.5895	0.0011705	5.9925	0.0044128	7.582	0.0055833	736.3882948335546	23.706	0.24094	23.706	23.634	23.875	0	585	58	1.2711272	0.034172773	1.2711272	259.33838	0	6.971985						226	11	3	NaN	NaN	NaN	0.67593	1	3831	3831		20.555	0	1	25977			15714	6661	9120	9310	12421	12421					-0.001990254704082872
LSTTPRSNA	9	Unmodified	_LSTTPRSNA_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4952350164001	1	946.495235	945.487959	1.5761	0.0014917	-4.6106	-0.0043639	-3.0345	-0.0028722	946.491149462065	29.232	0.19304	29.232	29.184	29.377	0	303	73	1.4393384	0.042737603	1.4393384	292.46033	0	8.683868						374	9	3	NaN	NaN	NaN	0.048656	1	6960	6960		47.482	3.1792	1	74617			15715	2616	9121	9311	12422	12422					0.013034088867129867
LSTTPRSNA	9	Unmodified						0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	946.495235	945.487959	1.2883	0.0012194	-5.3145	-0.0050301	-4.0261	-0.0038107	946.4907964428528	29.231	0.24132	29.224	29.175	29.417	-0.0077209	303	91	1.4393384	0.0534333	1.437819	292.46033		10.857178	-0.0042402	-0.0003826	-0.00075972	NaN	47.482	416	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70628			15716	2616	9121	9311							0.013034088867129867
LSVGPIMES	9	Unmodified	_LSVGPIMES_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.4757451277001	1	932.475745	931.468469	1.4862	0.0013858	1.1972	0.0011164	2.6834	0.0025022	932.4765674640254	24.261	0.16897	24.261	24.188	24.357	0	324	88	1.42687	0.051665902	1.42687	289.98947	0	10.500305						193	8	2	NaN	NaN	NaN	0.29681	1	6630	6630		19.118	0	1	19548	+		15717	10921	9122	9312	12423	12423					-6.834484111095662E-06
LSVPIYMVF	9	Unmodified	_LSVPIYMVF_					0	0	0		BACH1-DSCR3|1|fusion;ENSG00000157538|ENST00000309117|VPS26C;ENST00000399000.7_1_21:38597847-38603826:-|nuORF;ENST00000497493.1_1_21:38599661-38600668:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C	BACH1-DSCR3|1|fusion	BACH1-DSCR3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5798162687	1	1068.57982	1067.57254	1.9887	0.002125	-3.8018	-0.0040626	-1.8132	-0.0019375	1068.5779132556197	34.372	0.21702	34.372	34.276	34.493	0	81	130	1.5705823	0.076033115	1.5705823	318.6034	0	15.423828						750	10	5	NaN	NaN	NaN	0.097143	1	11456	11456		49.833	0	1	185880			15718	58	9123	9313	12424	12424					0.041456433790926894
LSVSRVLY	8	Unmodified	_LSVSRVLY_					0	0	0		ENST00000416464.6_1_17:15587015-15587114:-|nuORF	ENST00000416464.6_1_17:15587015-15587114:-|nuORF	ENST00000416464.6_1_17:15587015-15587114:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5512933323	1	936.551293	935.544017	1.2753	0.0011944	-4.0537	-0.0037965	-2.7784	-0.0026021	936.5474094378553	32.635	0.096554	32.635	32.611	32.707	0	231	70	1.4820169	0.04084599	1.4820169	301.17816	0	8.300812						126	5	2	NaN	NaN	NaN	0.81251	1	6742	6742		7.5404	0	1	12730			15719	6886	9124	9314	12425	12425					0.07366661794173979
LSVWFISW	8	Unmodified	_LSVWFISW_					0	0	0			REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	REV__ENST00000355947.6_1_7:99489545-99489743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2763780697501	2	519.276378	1036.5382	1.3052	0.00067778	-4.6277	-0.002403	-3.3224	-0.0017253	519.2740066046691	24.285	0.14483	24.272	24.224	24.368	-0.012749	1287	73	0.8449601	0.04425305	0.84344065	342.93848	0	17.960724						197	7	2	NaN	NaN	NaN	0.82797	1	9861	9861		5.4659	0.55612	1	20491	+		15720	11817	9125	9315	12426	12426					0.02139563282526069
LSWPVTEFAE	10	Unmodified	_LSWPVTEFAE_					0	0	0		ENST00000496607.5_1_21:47655184-47686088:-|nuORF;ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENST00000496607.5_1_21:47655184-47686088:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.790046551	2	589.790047	1177.56554	1.799	0.0010611	2.6413	0.0015578	4.4403	0.0026189	589.7910594703063	16.374	0.047995	16.374	16.35	16.398	0	1212	43	0.8910048	0.025744617	0.8910048	361.05807	0	10.432404						47	3	2	NaN	NaN	NaN	0.76548	1	15745	15745		3.5698	1.2316	1	4431.7			15721	4059	9126	9316	12427	12427					-0.016139979677518568
LSYKTWRA	8	Unmodified	_LSYKTWRA_					0	0	0		nc|ENSG00000185379|O75771-8|RAD51D	nc|ENSG00000185379|O75771-8|RAD51D	nc|ENSG00000185379|O75771-8|RAD51D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5574413427	1	1024.55744	1023.55016	1.4831	0.0015196	1.4529	0.0014886	2.9361	0.0030082	1024.5588451945625	31.115	0.072412	31.115	31.042	31.115	0	120	49	1.5476005	0.028301835	1.5476005	314.1136	0	5.7443542						49	4	2	NaN	NaN	NaN	0.6053	1	9519	9519		24.961	1.6266	1	6164.5			15722	8002	9127	9317	12428	12428					0.03933180025705951
LSYSSSYSCL	10	Unmodified	_LSYSSSYSCL_					0	0	0			REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2446145921001	2	555.244615	1108.47468	1.6631	0.00092341	1.3092	0.00072691	2.9722	0.0016503	555.245370010166	23.224	0.12053	23.224	23.2	23.32	0	1296	79	0.8394264	0.04793048	0.8394264	340.40256	0	19.436676						174	6	3	NaN	NaN	NaN	0.37681	1	13207	13207		24.562	1.4444	1	20397	+		15723	11894	9128	9318	12429	12429					-0.07522210007527974
LSYSSSYSCL	10	Unmodified						0	0	0			REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.244615	1108.47468	1.6631	0.00092341	1.3092	0.00072691	2.9722	0.0016503	555.245370010166	23.224	0.12053	23.224	23.2	23.32	0	1296	79	0.8394264	0.04793048	0.8394264	340.40256		19.436676	-0.0051417	3.238E-05	0.00075972	NaN	24.562	174	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20397	+		15724	11894	9128	9318							-0.07522210007527974
LSYSSSYSCL	10	Unmodified						0	0	0			REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	REV__ENST00000370986.8_1_1:68153492-68153543:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.244615	1108.47468	1.6836	0.00093481	1.2376	0.00068718	2.9212	0.001622	555.2454833336297	23.248	0.14477	23.234	23.21	23.355	-0.013294	1296	55	0.8394264	0.033196986	0.83790696	340.40256		13.461975	0.0051417	-4.708E-05	-0.00075972	NaN	24.562	171	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17775	+		15725	11894	9128	9318							-0.07522210007527974
LTAGEASW	8	Unmodified	_LTAGEASW_					0	0	0			REV__ENST00000526084.1_1_11:7687117-7687363:-|nuORF	REV__ENST00000526084.1_1_11:7687117-7687363:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	834.3992093662	1	834.399209	833.391933	1.5014	0.0012528	5.6223	0.0046912	7.1237	0.005944	834.4048141452349	24.96	0.12064	24.948	24.924	25.044	-0.012394	438	49	1.359022	0.028634548	1.3575026	276.67343	0	5.829529						106	6	2	NaN	NaN	NaN	0.74229	1	5060	5060		16.417	3.8288	1	7566.5	+		15726	12622	9129	9319	12430	12430					-0.03142738953386015
LTAGEASW	8	Unmodified						0	0	0			REV__ENST00000526084.1_1_11:7687117-7687363:-|nuORF	REV__ENST00000526084.1_1_11:7687117-7687363:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	834.399209	833.391933	1.5014	0.0012528	5.6223	0.0046912	7.1237	0.005944	834.4048141452349	24.96	0.12064	24.948	24.924	25.044	-0.012394	438	49	1.359022	0.028634548	1.3575026	276.67343		5.829529	-0.018368	0.00040685	0.0010296	NaN	16.417	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7566.5	+		15727	12622	9129	9319							-0.03142738953386015
LTAIAAYII	9	Unmodified	_LTAIAAYII_					0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5764454503	1	948.576445	947.569169	1.3291	0.0012607	-0.23465	-0.00022258	1.0944	0.0010381	948.5765443487761	34.371	0.16867	34.37	34.322	34.491	-0.00064468	186	112	1.5086359	0.06566012	1.5071164	306.53125	0	13.341095						477	8	4	NaN	NaN	NaN	0.025843	1	6903	6903		64.55	5.1048	1	93714	+		15728	13476	9130	9320	12431	12431					0.09328716596746744
LTAIAAYII	9	Unmodified	_LTAIAAYII_					0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5764454503	1	948.576445	947.569169	1.7004	0.001613	-0.013927	-1.3211E-05	1.6865	0.0015997	948.5766291136423	34.95	0.24125	34.95	34.877	35.119	-4.5776E-05	180	166	1.5121819	0.0976547	1.5106624	307.25174	0	19.841888						751	11	4	NaN	NaN	NaN	0.032764	1	6904	6904		55.494	2.1699	1	331920	+		15729	13476	9130	9320	12432	12432					0.09328716596746744
LTAIAAYII	9	Unmodified						0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.576445	947.569169	1.7661	0.0016753	0.27372	0.00025965	2.0398	0.0019349	948.5763420833	34.372	0.19296	34.372	34.348	34.541	0	189	121	1.5068626	0.07098758	1.5068626	306.17093		14.423584	0.00093346	0.00023252	-0.00012692	NaN	64.55	473	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95329	+		15730	13476	9130	9320							0.09328716596746744
LTAIAAYII	9	Unmodified						0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.576445	947.569169	1.3291	0.0012607	-0.23465	-0.00022258	1.0944	0.0010381	948.5765443487761	34.371	0.16867	34.37	34.322	34.491	-0.00064468	186	112	1.5086359	0.06566012	1.5071164	306.53125		13.341095	-0.00093346	-0.00024971	0.00012692	NaN	64.55	477	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93714	+		15731	13476	9130	9320							0.09328716596746744
LTATPVTP	8	Unmodified	_LTATPVTP_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4559959636	1	799.455996	798.448719	1.737	0.0013886	-0.23361	-0.00018676	1.5033	0.0012019	799.4567056854903	21.031	0.09623	21.031	20.983	21.079	0	549	49	1.292695	0.028738618	1.292695	263.35718	0	5.854828						72	5	2	NaN	NaN	NaN	0.75561	1	4736	4736		15.175	0	1	4571.3			15732	4196	9131	9321	12433	12433					0.0414330860313612
LTAVHDAIL	9	Unmodified	_LTAVHDAIL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.7767422105	2	476.776742	951.538931	1.2607	0.00060107	-1.1134	-0.00053082	0.14734	7.025E-05	476.7764237454097	20.935	0.12022	20.935	20.911	21.031	0	1326	55	0.8209676	0.033236563	0.8209676	333.59064	0	13.50528						176	6	3	NaN	NaN	NaN	0.16171	1	7133	7133		27.789	12.613	1	27615			15733	4814	9132	9322	12434	12434					0.06122357931565148
LTAVHDAIL	9	Unmodified						0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	476.776742	951.538931	0.70558	0.0003364	0.51494	0.00024551	1.2205	0.00058191	476.77660695812347	20.959	0.14439	20.945	20.921	21.065	-0.014088	1326	58	0.8209676	0.03508115	0.81944823	333.5906		14.254791	0.0050762	0.00077602	-0.00075972	NaN	27.789	183	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27592			15734	4814	9132	9322							0.06122357931565148
LTAYIGTLI	9	Unmodified	_LTAYIGTLI_					0	0	0		tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5713600724004	1	964.57136	963.564084	1.0823	0.0010439	0.64693	0.00062401	1.7292	0.001668	964.5721118150396	34.251	0.12055	34.249	34.201	34.322	-0.0012474	123	58	1.5458313	0.033617258	1.5443119	314.01407	0	6.8289185						206	6	3	NaN	NaN	NaN	0.062072	1	7300	7300		41.785	0	1	28503			15735	13753	9133	9323	12435	12435					0.08084412734160651
LTAYIGTLI	9	Unmodified						0	0	0		tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	tr|U7SK92|U7SK92_FUSNUYibE/FfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02146PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	964.57136	963.564084	1.3113	0.0012649	0.94935	0.00091572	2.2607	0.0021806	964.5722550856791	34.252	0.16884	34.252	34.203	34.372	0	126	58	1.544062	0.033620834	1.544062	313.65463		6.8296204	0.001177	0.00015995	-0.00012495	NaN	41.785	175	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25529			15736	13753	9133	9323							0.08084412734160651
LTCGGCQQ	8	Unmodified	_LTCGGCQQ_					0	0	0		nc|ENSG00000135363|P25791|LMO2;ENST00000464025.5_1_11:33880904-33886446:-|nuORF;ENSG00000135363|ENST00000257818|LMO2	nc|ENSG00000135363|P25791|LMO2	nc|ENSG00000135363|P25791|LMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.1676557498	2	405.167656	808.320759	1.0321	0.00041819	-0.71328	-0.000289	0.31886	0.00012919	405.16781642829386	44.088	0.23951	44.088	43.992	44.232	0	1365	43	0.7969414	0.025892675	0.7969414	324.64352	0	10.547668						297	11	3	NaN	NaN	NaN	0.84692	1	4863	4863		1.4396	0	1	50134			15737	2934	9134	9324	12436	12436					-0.09106898254049156
LTCGGCQQ	8	Unmodified	_LTCGGCQQ_					0	0	0		nc|ENSG00000135363|P25791|LMO2;ENST00000464025.5_1_11:33880904-33886446:-|nuORF;ENSG00000135363|ENST00000257818|LMO2	nc|ENSG00000135363|P25791|LMO2	nc|ENSG00000135363|P25791|LMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3280350330001	1	809.328035	808.320759	1.4495	0.0011731	0.30671	0.00024823	1.7562	0.0014213	809.3288061119408	42.147	0.19205	42.147	42.075	42.267	0	411	55	1.3751161	0.03217268	1.3751161	280.09073	0	6.553131						254	9	3	NaN	NaN	NaN	0.84692	1	4864	4864		1.4396	0	1	26552			15738	2934	9134	9324	12437	12437					-0.09106898254049156
LTCLGLCVHR	10	Unmodified	_LTCLGLCVHR_					0	0	0		ENST00000459720.5_1_9:90584692-90584863:-|nuORF	ENST00000459720.5_1_9:90584692-90584863:-|nuORF	ENST00000459720.5_1_9:90584692-90584863:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.20017799576664	3	372.200178	1113.5787	1.3745	0.0005116	-2.7437	-0.0010212	-1.3692	-0.00050962	372.1993630724951	14.62	0.16767	14.609	14.561	14.728	-0.011218	1488	43	0.7209441	0.02600807	0.71942466	438.5043	0	15.819031						131	8	2	NaN	NaN	NaN	0.63781	1	13044	13044		12.307	2.063	1	14215			15739	7068	9135	9325	12438	12438					0.02645838338980866
LTDAIYDII	9	Unmodified	_LTDAIYDII_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5561039386998	1	1036.5561	1035.54883	1.0779	0.0011173	0.033715	3.4948E-05	1.1116	0.0011522	1036.5563926543584	31.451	0.26548	31.447	31.399	31.664	-0.0044155	192	157	1.5050892	0.09223509	1.5035697	305.4381	0	18.717896						717	12	5	NaN	NaN	NaN	0.014046	1	9811	9811		80.639	0	1	228300			15740	5814	9136	9326	12439	12439					0.03247501146279319
LTDCEYEIE	9	Unmodified	_LTDCEYEIE_					0	0	0			REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.4608829245	1	1114.46088	1113.45361	1.6345	0.0018216	-0.67177	-0.00074867	0.96273	0.0010729	1114.4591232395373	22.741	0.04825	22.728	22.704	22.752	-0.01354	120	43	1.5476005	0.024764061	1.5460811	313.7762	0	5.020935						66	3	2	NaN	NaN	NaN	0.10956	1	13021	13021		34.439	5.5432	1	5483.9	+		15741	13583	9137	9327	12440	12440					-0.0985822010704851
LTDCEYEIE	9	Unmodified						0	0	0			REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1114.46088	1113.45361	2.1801	0.0024297	-2.2721	-0.0025321	-0.091946	-0.00010247	1114.4594815072935	22.742	0.048277	22.742	22.718	22.766	0	117	46	1.5493695	0.026534319	1.5493695	314.1349		5.3798523	0.0070703	-0.00089282	0.0016442	NaN	34.439	77	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5949.9	+		15742	13583	9137	9327							-0.0985822010704851
LTDCEYEIE	9	Unmodified						0	0	0			REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	REV__tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1114.46088	1113.45361	1.6345	0.0018216	-0.67177	-0.00074867	0.96273	0.0010729	1114.4591232395373	22.741	0.04825	22.728	22.704	22.752	-0.01354	120	43	1.5476005	0.024764061	1.5460811	313.7762		5.020935	-0.0070703	0.00089066	-0.0016442	NaN	34.439	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5483.9	+		15743	13583	9137	9327							-0.0985822010704851
LTDFINEQP	9	Unmodified	_LTDFINEQP_					0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7665714547	2	538.766571	1075.51859	2.1129	0.0011383	-0.30366	-0.0001636	1.8092	0.00097474	538.767079691971	26.07	0.24138	26.059	25.987	26.228	-0.011137	1269	121	0.8560222	0.07367551	0.85450274	347.26306	0	29.888						519	11	3	NaN	NaN	NaN	0.070055	1	11472	11472		40.154	0	1	148570	+		15744	11804	9138	9328	12441	12441					-0.016148575188935865
LTDFINEQP	9	Unmodified						0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.766571	1075.51859	2.1129	0.0011383	-0.30366	-0.0001636	1.8092	0.00097474	538.767079691971	26.07	0.24138	26.059	25.987	26.228	-0.011137	1269	121	0.8560222	0.07367551	0.85450274	347.26306		29.888	-0.005674	0.0011948	-0.0016812	NaN	40.154	519	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148570	+		15745	11804	9138	9328							-0.016148575188935865
LTDHLKFW	8	Unmodified	_LTDHLKFW_					0	0	0			REV__nc|ENSG00000134365|Q92496-2|CFHR4	REV__nc|ENSG00000134365|Q92496-2|CFHR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2847344181001	2	530.284734	1058.55492	0.88662	0.00047016	8.9538	0.0047481	9.8404	0.0052182	530.2890399286046	24.502	0.096487	24.489	24.465	24.561	-0.012747	1272	100	0.854179	0.06077242	0.8526596	346.5855	0	24.65857						164	5	2	NaN	NaN	NaN	0.80071	1	10800	10800		9.1232	0.83292	1	16189	+		15746	9587	9139	9329	12442	12442					0.02798064168473502
LTDTNFEMSAT	11	Unmodified	_LTDTNFEMSAT_					0	0	0			REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	REV__tr|U7T3C2|U7T3C2_FUSNUEndonucleaseMutS2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutS2PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2713606588501	2	615.271361	1228.52817	1.1872	0.00073044	-2.8427	-0.0017491	-1.6556	-0.0010186	615.2696137785915	15.678	0.096066	15.678	15.63	15.726	0	1164	34	0.9204082	0.02020061	0.9204082	372.7939	0	8.181885						51	5	2	NaN	NaN	NaN	0.70497	1	17197	17197		7.1304	0.26716	1	3784.3	+		15747	13590	9140	9330	12443	12443					-0.07695457295676533
LTDVCFYY	8	Unmodified	_LTDVCFYY_					0	0	0		MBTPS2|p.S346Y|1|0.13|ENSG00000012174|chrX:21878108-21878108|C/A|missense_variant	MBTPS2|p.S346Y|1|0.13|ENSG00000012174|chrX:21878108-21878108|C/A|missense_variant	MBTPS2|p.S346Y|1|0.13|ENSG00000012174|chrX:21878108-21878108|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2282362464	2	512.228236	1022.44192	1.9245	0.0009858	-10.227	-0.0052384	-8.3021	-0.0042526	512.7239314596218	21.488	0.16872	21.488	21.464	21.633	0	1338	79	0.81357855	0.048039496	0.81357855	330.26154	0	19.501007						289	8	4	NaN	NaN	NaN	0.80071	1	9451	9451		9.1232	0.16122	1	42979			15748	7874	9141	9331	12444	12444					-0.06840372339752321
LTDVEMNPGT	10	Unmodified	_LTDVEMNPGT_					0	0	0			REV__ENSG00000149782|ENST00000279230|PLCB3	REV__ENSG00000149782|ENST00000279230|PLCB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.4928517549	1	1076.49285	1075.48558	1.3137	0.0014142	-10.916	-0.011751	-9.6026	-0.010337	1076.4806035216343	31.669	0.04825	31.664	31.664	31.712	-0.0044155	135	58	1.5387528	0.033642292	1.5372335	312.11728	0	6.8239136						59	3	2	NaN	NaN	NaN	0.70677	1	11464	11464		7.5876	2.3987	1	4537.1	+		15749	10000	9142	9332	12445	12445					-0.04914807633258533
LTEQYLQT	8	Unmodified	_LTEQYLQT_					0	0	0		ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENST00000512558.5_1_5:79729945-79747536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.5044027191999	1	995.504403	994.497126	1.3344	0.0013284	6.7877	0.0067572	8.1221	0.0080856	995.512824167187	29.473	0.096514	29.466	29.442	29.538	-0.0070667	231	91	1.4820169	0.05325198	1.4804975	300.919	0	10.812653						133	5	2	NaN	NaN	NaN	0.75561	1	8206	8206		15.175	1.4383	1	17449			15750	525	9143	9333	12446	12446					-0.00034242547633311915
LTEVFSWF	8	Unmodified	_LTEVFSWF_					0	0	0			REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5087598156	1	1028.50876	1027.50148	-0.17601	-0.00018103	9.7128	0.0099897	9.5368	0.0098087	1029.5202324502561	55.218	0.072227	55.217	55.193	55.266	-0.00061798	93	61	1.5635144	0.035343528	1.5619949	317.32733	0	7.1732483						100	4	2	NaN	NaN	NaN	0.82332	1	9476	9476		6.0903	1.1806	1	6962.4	+		15751	8458	9144	9334	12447	12447					-0.01116733334060882
LTEYQIVHNG	10	Unmodified	_LTEYQIVHNG_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.29857007485	2	587.29857	1172.58259	2.3518	0.0013812	5.5182	0.0032408	7.87	0.0046221	587.3009231752245	18.364	0.072077	18.364	18.316	18.388	0	1164	40	0.9204082	0.023868322	0.9204082	372.99142	0	9.672546						70	4	3	NaN	NaN	NaN	0.70677	1	15575	15575		7.5876	1.3374	1	6215.8			15752	3354	9145	9335	12448	12448					0.003199226380274922
LTFFWYPESL	10	Unmodified	_LTFFWYPESL_					0	0	0		ENST00000562968.1_1_16:27356645-27356831:+|nuORF	ENST00000562968.1_1_16:27356645-27356831:+|nuORF	ENST00000562968.1_1_16:27356645-27356831:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.8238893683501	2	651.823889	1301.63323	1.8699	0.0012188	-11.361	-0.0074053	-9.491	-0.0061864	652.3183324828893	25.732	0.096504	25.732	25.708	25.805	0	1074	85	0.9754029	0.051289678	0.9754029	394.82187	0	20.760925						116	5	3	NaN	NaN	NaN	0.69717	1	18807	18807		8.2448	1.1144	1	8633.2			15753	7608	9146	9336	12449	12449					-0.005525480369442448
LTFFWYPESL	10	Unmodified						0	0	0		ENST00000562968.1_1_16:27356645-27356831:+|nuORF	ENST00000562968.1_1_16:27356645-27356831:+|nuORF	ENST00000562968.1_1_16:27356645-27356831:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	651.823889	1301.63323	1.926	0.0012554	-10.709	-0.0069807	-8.7835	-0.0057253	651.8170389789319	25.756	0.072388	25.745	25.721	25.793	-0.0116	1074	37	0.9754029	0.02196467	0.97388345	394.82187		8.890808	0.0061249	0.00043683	-0.00075972	NaN	8.2448	75	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6299.3			15754	7608	9146	9336							-0.005525480369442448
LTFLITHVF	9	Unmodified	_LTFLITHVF_					0	0	0			REV__ENST00000518647.5_1_8:42129618-42174557:+|nuORF	REV__ENST00000518647.5_1_8:42129618-42174557:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.6295436533	1	1090.62954	1089.62227	1.4434	0.0015742	-9.8708	-0.010765	-8.4275	-0.0091912	1090.6187200167972	37.506	0.14455	37.506	37.482	37.626	0	60	70	1.582944	0.040608644	1.582944	321.02814	0	8.235596						258	7	4	NaN	NaN	NaN	0.043119	1	12388	12388		49.833	0	1	28776	+		15755	12588	9147	9337	12450	12450					0.08104094379427806
LTFVDPVL	8	Unmodified	_LTFVDPVL_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.5185962204001	1	903.518596	902.51132	1.2472	0.0011269	2.0182	0.0018235	3.2654	0.0029504	903.5196038576543	31.718	0.048271	31.718	31.718	31.766	0	327	40	1.425088	0.023170471	1.425088	289.76263	0	4.7112427						59	3	2	NaN	NaN	NaN	0.62311	1	6130	6130		23.85	4.5657	1	4662.3			15756	5312	9148	9338	12451	12451					0.056164546713375785
LTGAFMSA	8	Unmodified	_LTGAFMSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19673915275	2	399.196739	796.378925	1.5424	0.00061571	-3.8384	-0.0015323	-2.296	-0.00091655	399.1954948757016	31.863	0.84462	31.863	31.718	32.563	0	1398	139	0.77658504	0.08526987	0.77658504	316.43018	0	34.744354						1555	36	5	NaN	NaN	NaN	0.82797	1	4709	4709		5.4659	0	1	1975200			15757	5616	9149	9339	12452	12452					-0.02740893337113448
LTGARGPP	8	Unmodified	_LTGARGPP_					0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.4362635745001	1	768.436264	767.428987	1.2446	0.0009564	-9.6173	-0.0073903	-8.3727	-0.0064339	768.4287435976154	33.262	0.31373	33.262	33.214	33.528	0	537	112	1.2998781	0.06647587	1.2998781	265.0015	0	13.55217						545	14	4	NaN	NaN	NaN	0.59262	1	4327	4327		25.752	6.4671	1	152220	+		15758	8547	9150	9340	12453	12453					0.035969773830515805
LTGARGPP	8	Unmodified						0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	768.436264	767.428987	1.2446	0.0009564	-9.6173	-0.0073903	-8.3727	-0.0064339	768.4287435976154	33.262	0.31373	33.262	33.214	33.528	0	537	112	1.2998781	0.06647587	1.2998781	265.0015		13.55217	0.0018924	-0.00011767	-0.00013793	NaN	25.752	545	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152220	+		15759	8547	9150	9340							0.035969773830515805
LTGARGPP	8	Unmodified						0	0	0			REV__ENSG00000067191|ENST00000394303|CACNB1	REV__ENSG00000067191|ENST00000394303|CACNB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	768.436264	767.428987	1.2624	0.00097008	-9.2213	-0.007086	-7.9589	-0.0061159	768.4286932546884	33.261	0.26546	33.259	33.21	33.476	-0.0024757	534	151	1.3016734	0.0898658	1.300154	265.3675		18.320633	-0.0018924	0.00018664	0.00013793	NaN	25.752	568	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153440	+		15760	8547	9150	9340							0.035969773830515805
LTGAVGTE	8	Unmodified	_LTGAVGTE_					0	0	0			REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3883103289002	1	747.38831	746.381034	1.2638	0.00094455	4.895	0.0036585	6.1588	0.004603	747.3921514235419	27.615	0.21714	27.605	27.557	27.774	-0.009552	582	58	1.2729256	0.034169078	1.2714062	259.63522	0	6.9693604						242	10	3	NaN	NaN	NaN	0.80071	1	3917	3917		9.1232	0	1	26442	+		15761	9933	9151	9341	12454	12454					-0.0023014132765410977
LTGAVGTE	8	Unmodified						0	0	0			REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	REV__RASA1|p.P139Lfs*35|1|0.43|ENSG00000145715|chr5:87268863-87268863|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	747.38831	746.381034	1.2638	0.00094455	4.895	0.0036585	6.1588	0.004603	747.3921514235419	27.615	0.21714	27.605	27.557	27.774	-0.009552	582	58	1.2729256	0.034169078	1.2714062	259.63522		6.9693604	0.0068787	-0.00083013	0.00013947	NaN	9.1232	242	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26442	+		15762	9933	9151	9341							-0.0023014132765410977
LTGDPSIIV	9	Unmodified	_LTGDPSIIV_					0	0	0		tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	tr|U7SYR5|U7SYR5_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00888PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5193245019002	1	914.519325	913.512048	2.2325	0.0020417	-0.62913	-0.00057535	1.6034	0.0014663	914.5193781795052	25.829	0.16891	25.829	25.781	25.95	0	336	79	1.419741	0.046363115	1.419741	288.62323	0	9.425293						271	8	3	NaN	NaN	NaN	0.12328	1	6300	6300		32.453	5.7212	1	37058			15763	13920	9152	9342	12455	12455					0.05183249320396044
LTGDRARA	8	Unmodified	_LTGDRARA_					0	0	0		ENST00000328090.9_2_10:5726882-5726975:+|nuORF	ENST00000328090.9_2_10:5726882-5726975:+|nuORF	ENST00000328090.9_2_10:5726882-5726975:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.4744399948	1	859.47444	858.467164	1.1436	0.00098288	-7.429	-0.0063851	-6.2855	-0.0054022	859.4693824417034	27.928	0.072367	27.919	27.895	27.967	-0.009552	378	46	1.3947657	0.026780725	1.3932463	283.8157	0	5.4494934						89	4	2	NaN	NaN	NaN	0.7718	1	5385	5385		13.003	1.4544	1	7980.4			15764	6498	9153	9343	12456	12456					0.03226863297709315
LTGDRARA	8	Unmodified						0	0	0		ENST00000328090.9_2_10:5726882-5726975:+|nuORF	ENST00000328090.9_2_10:5726882-5726975:+|nuORF	ENST00000328090.9_2_10:5726882-5726975:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	859.47444	858.467164	1.9241	0.0016537	-8.4942	-0.0073006	-6.5701	-0.0056469	859.4669533042465	27.905	0.096518	27.905	27.857	27.953	0	375	52	1.3965509	0.030357838	1.3965509	284.17896		6.177429	-0.0069123	-0.00040029	0.0016523	NaN	13.003	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8282.1			15765	6498	9153	9343							0.03226863297709315
LTGKGDSS	8	Unmodified	_LTGKGDSS_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.3784739241001	1	764.378474	763.371197	1.3773	0.0010528	5.8925	0.0045041	7.2698	0.0055568	764.3829906011467	30.51	0.096502	30.505	30.48	30.577	-0.0057545	552	55	1.2908988	0.03234136	1.2893794	263.1954	0	6.593933						96	5	2	NaN	NaN	NaN	0.84512	1	4185	4185		2.4615	0	1	8469.6			15766	5891	9154	9344	12457	12457					-0.01995329333033169
LTGPILGQL	9	Unmodified	_LTGPILGQL_					0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.28166041290007	2	456.28166	910.548768	1.4541	0.00066346	-2.6686	-0.0012176	-1.2145	-0.00055417	456.2804657348531	28.604	0.072386	28.596	28.547	28.62	-0.0083504	1374	37	0.791392	0.022198498	0.7898726	321.779	0	9.025879						50	4	2	NaN	NaN	NaN	0.47587	1	6116	6116		10.605	1.643	1	3950.1	+		15767	9990	9155	9345	12458	12458					0.08991545936953571
LTGPSGPA	8	Unmodified	_LTGPSGPA_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3671809563001	1	699.367181	698.359904	1.579	0.0011043	6.7746	0.0047379	8.3536	0.0058423	699.3715671221213	25.998	0.14483	25.998	25.974	26.119	0	672	76	1.2188909	0.045089245	1.2188909	248.92206	0	9.20813						169	7	2	NaN	NaN	NaN	0.82332	1	3196	3196		6.0903	2.5171	1	18945	+		15768	10388	9156	9346	12459	12459					-0.001341066365171173
LTGPSGPA	8	Unmodified						0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	699.367181	698.359904	1.579	0.0011043	6.7746	0.0047379	8.3536	0.0058423	699.3715671221213	25.998	0.14483	25.998	25.974	26.119	0	672	76	1.2188909	0.045089245	1.2188909	248.92206		9.20813	0.0056841	0.00029657	-0.00014226	NaN	6.0903	169	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18945	+		15769	10388	9156	9346							-0.001341066365171173
LTGPSLLL	8	Unmodified	_LTGPSLLL_					0	0	0			REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.5080315341003	1	813.508032	812.500755	2.3672	0.0019257	-1.4983	-0.0012189	0.86888	0.00070684	813.5066304189514	30.149	0.048267	30.149	30.125	30.173	0	444	37	1.3554435	0.021471381	1.3554435	276.06	0	4.3730164						46	3	2	NaN	NaN	NaN	0.78264	1	4923	4923		11.548	2.4253	1	3219.1	+		15770	12951	9157	9347	12460	12460					0.08700472016914773
LTGPSLLL	8	Unmodified						0	0	0			REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	813.508032	812.500755	2.3672	0.0019257	-1.4983	-0.0012189	0.86888	0.00070684	813.5066304189514	30.149	0.048267	30.149	30.125	30.173	0	444	37	1.3554435	0.021471381	1.3554435	276.06		4.3730164	0.015756	0.00024089	-0.00013497	NaN	11.548	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3219.1	+		15771	12951	9157	9347							0.08700472016914773
LTGPSLLL	8	Unmodified						0	0	0			REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	REV__ENST00000597778.5_1_19:47995938-47996286:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	813.508032	812.500755	1.9437	0.0015812	-1.928	-0.0015684	0.015763	1.2823E-05	813.5065136490351	30.124	0.072399	30.118	30.094	30.166	-0.0064106	441	46	1.3572328	0.026843548	1.3557134	276.42444		5.4671326	-0.015756	-0.00010861	0.00013497	NaN	11.548	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3406	+		15772	12951	9157	9347							0.08700472016914773
LTGSSGGG	8	Unmodified	_LTGSSGGG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	318.1533858941001	2	318.153386	634.292219	1.2723	0.00040479	2.8437	0.00090474	4.116	0.0013095	318.1543801172183	41.207	0.12051	41.215	41.118	41.239	0.0074959	1506	88	0.70979416	0.053917766	0.7082747	290.46127	0	22.064148						167	6	2	NaN	NaN	NaN	0.84887	1	1495	1495		0.32989	0	1	10877	+		15773	10213	9158	9348	12461	12461					-0.03955556567302665
LTGSSGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	318.153386	634.292219	1.1052	0.00035163	2.6998	0.00085896	3.8051	0.0012106	318.1545565825065	41.401	0.072227	41.401	41.377	41.45	0	1500	100	0.71351165	0.06138134	0.71351165	291.9825		25.118408	0.093288	-5.1924E-05	0.0026184	NaN	0.32989	122	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7762	+		15774	10213	9158	9348							-0.03955556567302665
LTGSSGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	318.153386	634.292219	1.2723	0.00040479	2.8437	0.00090474	4.116	0.0013095	318.1543801172183	41.207	0.12051	41.215	41.118	41.239	0.0074959	1506	88	0.70979416	0.053917766	0.7082747	290.46127		22.064148	-0.093288	3.9635E-05	-0.0026184	NaN	0.32989	167	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10877	+		15775	10213	9158	9348							-0.03955556567302665
LTHDDKPPF	9	Unmodified	_LTHDDKPPF_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.1819463682999	3	357.181946	1068.52401	1.725	0.00061614	-3.8639	-0.0013801	-2.1389	-0.00076397	357.1803601914829	15.87	0.095946	15.87	15.798	15.894	0	1497	43	0.71537006	0.026019335	0.71537006	435.33777	0	15.834045						82	5	2	NaN	NaN	NaN	0.25448	1	11488	11488		14.854	0	1	7029.9	+		15776	9516	9159	9349	12462	12462					-0.00751133936455517
LTHGCLDSL	9	Unmodified	_LTHGCLDSL_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28966826-28970509:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4662430739	1	958.466243	957.458967	1.1359	0.0010888	5.5989	0.0053663	6.7348	0.0064551	958.4719739208267	32.537	0.19307	32.534	32.462	32.655	-0.0031052	309	70	1.435777	0.040959	1.4342575	291.68423	0	8.320984						299	9	3	NaN	NaN	NaN	0.032764	1	7130	7130		55.494	5.6607	1	39696			15777	1132	9160	9350	12463	12463					-0.021464517339381928
LTKQMEMI	8	Unmodified	_LTKQMEMI_					0	0	0			REV__ENSG00000166130|ENST00000299157|IKBIP	REV__ENSG00000166130|ENST00000299157|IKBIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.25901344605	2	497.259013	992.503474	1.5806	0.00078598	6.709	0.0033361	8.2896	0.0041221	497.2616817704907	16.611	0.16785	16.598	16.55	16.717	-0.012993	1305	46	0.83389086	0.027686596	0.8323714	338.64258	0	11.24353						96	8	2	NaN	NaN	NaN	0.74229	1	8151	8151		16.417	3.4138	1	8653.1	+		15778	10412	9161	9351	12464	12464					0.006922360879002554
LTLAHYGVG	9	Unmodified	_LTLAHYGVG_					0	0	0		tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1	tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1	tr|U7SXX4|U7SXX4_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00916PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5043431397002	1	930.504343	929.497067	2.3522	0.0021887	-7.5819	-0.007055	-5.2297	-0.0048662	930.4971487018009	25.684	0.048262	25.684	25.66	25.708	0	306	52	1.4375578	0.030267596	1.4375578	292.17065	0	6.151642						70	3	2	NaN	NaN	NaN	0.60063	1	6595	6595		5.4659	0.55612	1	5463.8			15779	13916	9162	9352	12465	12465					0.029498022430516357
LTLGGSGV	8	Unmodified	_LTLGGSGV_					0	0	0		ENST00000409638.7_1_2:220113277-220113556:+|nuORF	ENST00000409638.7_1_2:220113277-220113556:+|nuORF	ENST00000409638.7_1_2:220113277-220113556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3984810847002	1	703.398481	702.391205	0.92963	0.0006539	6.2149	0.0043716	7.1445	0.0050255	703.4031551181071	29.184	0.12067	29.184	29.16	29.28	0	582	67	1.2729256	0.039583087	1.2729256	259.92834	0	8.082779						141	6	2	NaN	NaN	NaN	0.84727	1	3258	3258		1.2418	0	1	12033			15780	6863	9163	9353	12466	12466					0.02810466397579603
LTLGSGFC	8	Unmodified	_LTLGSGFC_					0	0	0			REV__ENST00000376148.8_1_6:31516111-31525434:+|nuORF	REV__ENST00000376148.8_1_6:31516111-31525434:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.3862018389001	1	797.386202	796.378925	1.6319	0.0013012	-3.5655	-0.0028431	-1.9337	-0.0015419	797.3834967809133	30.993	0.48272	30.988	30.771	31.253	-0.0050716	483	100	1.3321642	0.059175372	1.3306447	271.41006	0	12.056183						805	21	3	NaN	NaN	NaN	0.8439	1	4617	4617		3.1533	0	1	150870	+		15781	11939	9164	9354	12467	12467					-0.02740893337113448
LTLLDLCL	8	Unmodified	_LTLLDLCL_					0	0	0		LINGO4|p.R140C|1|0.3|ENSG00000213171|chr1:151802287-151802287|G/A|missense_variant	LINGO4|p.R140C|1|0.3|ENSG00000213171|chr1:151802287-151802287|G/A|missense_variant	LINGO4|p.R140C|1|0.3|ENSG00000213171|chr1:151802287-151802287|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.5219670388	1	903.521967	902.514691	1.216	0.0010987	-4.8339	-0.0043676	-3.6179	-0.0032689	903.5197111725286	31.717	0.072412	31.712	31.688	31.761	-0.0044155	327	46	1.425088	0.026732326	1.4235686	289.76266	0	5.4354553						76	4	2	NaN	NaN	NaN	0.57691	1	6003	6003		26.732	4.6052	1	7014			15782	7863	9165	9355	12468	12468					0.05953381453673501
LTLLPACQV	9	Unmodified	_LTLLPACQV_					0	0	0		MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|29|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|29|1|anti-sense	MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|29|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.27552079	2	479.275521	956.536489	0.98267	0.00047097	-7.383	-0.0035385	-6.4003	-0.0030675	479.2716044544811	37.29	0.21654	37.29	37.241	37.458	0	1293	34	0.84127116	0.020290375	0.84127116	341.81534	0	8.244141						121	10	3	NaN	NaN	NaN	0.39244	1	7254	7254		14.042	0	1	11475			15783	7879	9166	9356	12469	12469					0.05648186202245142
LTLMGFRLE	9	Unmodified	_LTLMGFRLE_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2995272025502	2	540.299527	1078.5845	1.6695	0.000902	-4.5801	-0.0024747	-2.9107	-0.0015726	540.2970539441309	21.416	0.16849	21.402	21.33	21.499	-0.014004	1203	40	0.8965218	0.023907006	0.89500237	363.6795	0	9.698059						81	8	2	NaN	NaN	NaN	0.31471	1	11618	11618		17.97	2.507	1	5743.8			15784	4905	9167	9357	12470	12470					0.04835260122308682
LTLMGFRLE	9	Unmodified						0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.299527	1078.5845	1.4702	0.00079435	-5.4696	-0.0029552	-3.9994	-0.0021609	540.295524735264	21.248	0.072243	21.248	21.224	21.296	0	1215	55	0.8891654	0.033121705	0.8891654	360.69534		13.436005	-0.077256	-0.0005963	-0.0029185	NaN	17.97	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7647.5			15785	4905	9167	9357							0.04835260122308682
LTLRDLDR	8	Unmodified	_LTLRDLDR_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.29054807750003	2	501.290548	1000.56654	1.2563	0.00062975	-0.078303	-3.9253E-05	1.178	0.0005905	501.290522186992	29.521	0.14477	29.514	29.466	29.61	-0.0070648	1245	139	0.87076044	0.08461702	0.869241	353.57635	0	34.35916						676	7	3	NaN	NaN	NaN	0.84562	1	8460	8460		2.1763	0	1	193590			15786	1188	9168	9358	12471	12471					0.06628261191804086
LTLRLLLG	8	Unmodified	_LTLRLLLG_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1;ENSG00000234409|ENST00000439765|CCDC188	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.6084142807003	1	898.608414	897.601138	-0.30594	-0.00027492	3.3395	0.0030009	3.0335	0.002726	898.6113763384421	57.979	0.26421	57.978	57.786	58.05	-0.00051117	285	70	1.4500183	0.04092419	1.4484988	294.85593	0	8.321808						277	12	2	NaN	NaN	NaN	0.84727	1	5920	5920		1.2418	0	1	35086			15787	554	9169	9359	12472	12472					0.14824129070586878
LTMDPAWP	8	Unmodified	_LTMDPAWP_					0	0	0			REV__ENSG00000146670|ENST00000275517|CDCA5	REV__ENSG00000146670|ENST00000275517|CDCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4389656909	1	930.438966	929.431689	0.93927	0.00087393	-0.36375	-0.00033845	0.57552	0.00053548	930.4388792544695	32.296	0.3137	32.292	32.172	32.485	-0.0037613	330	199	1.4233059	0.11771619	1.4217864	289.27435	0	23.924774						965	14	4	NaN	NaN	NaN	0.27293	1	6447	6447		44.247	8.2106	1	139680	+		15788	9949	9170	9360	12473	12473					-0.03584935274318468
LTMDPAWP	8	Unmodified						0	0	0			REV__ENSG00000146670|ENST00000275517|CDCA5	REV__ENSG00000146670|ENST00000275517|CDCA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.438966	929.431689	1.7379	0.001617	-0.63768	-0.00059332	1.1002	0.0010237	930.4384413622067	32.297	0.24131	32.297	32.201	32.442	0	330	154	1.4233059	0.09089947	1.4233059	289.27435		18.474518	0.0024173	-0.00014793	0.00075972	NaN	44.247	767	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104620	+		15789	9949	9170	9360							-0.03584935274318468
LTMDPAWP	8	Unmodified						0	0	0			REV__ENSG00000146670|ENST00000275517|CDCA5	REV__ENSG00000146670|ENST00000275517|CDCA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.438966	929.431689	0.93927	0.00087393	-0.36375	-0.00033845	0.57552	0.00053548	930.4388792544695	32.296	0.3137	32.292	32.172	32.485	-0.0037613	330	199	1.4233059	0.11771619	1.4217864	289.27435		23.924774	-0.0024173	0.00010694	-0.00075972	NaN	44.247	965	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139680	+		15790	9949	9170	9360							-0.03584935274318468
LTMLDRVVM	9	Unmodified	_LTMLDRVVM_					0	0	0		nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2;ENST00000538126.5_1_16:71712656-71757677:-|nuORF;PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.2933875796501	2	539.293388	1076.57222	1.7061	0.00092012	-1.2759	-0.00068811	0.4302	0.00023201	539.295038395655	23.827	0.16864	23.827	23.754	23.923	0	1263	73	0.85970795	0.04420048	0.85970795	348.75397	0	17.930634						158	8	3	NaN	NaN	NaN	0.56022	1	11834	11834		4.7291	0	1	13332			15791	526	9171	9361	12474	12474					0.03699900387618982
LTNEALVLA	9	Unmodified	_LTNEALVLA_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.27657503499995	2	472.276575	942.538597	1.5967	0.00075406	-2.139	-0.0010102	-0.54232	-0.00025613	472.27500226235327	17.381	0.071972	17.381	17.381	17.453	0	1344	37	0.8098828	0.022176862	0.8098828	329.1312	0	9.012543						58	4	2	NaN	NaN	NaN	0.35794	1	6888	6888		15.463	2.4598	1	5580.7	+		15792	9645	9172	9362	12475	12475					0.06502938211701803
LTNEALVLA	9	Unmodified						0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	472.276575	942.538597	1.5967	0.00075406	-2.139	-0.0010102	-0.54232	-0.00025613	472.27500226235327	17.381	0.071972	17.381	17.381	17.453	0	1344	37	0.8098828	0.022176862	0.8098828	329.1312		9.012543	-0.015526	0.0011527	-0.00016427	NaN	15.463	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5580.7	+		15793	9645	9172	9362							0.06502938211701803
LTNEALVLA	9	Unmodified						0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	472.276575	942.538597	0.92441	0.00043658	-4.4373	-0.0020956	-3.5129	-0.0016591	472.274856521778	17.426	0.095993	17.412	17.364	17.46	-0.013567	1341	40	0.8117308	0.024023652	0.81021136	329.8822		9.763062	0.015526	-0.0010181	0.00016427	NaN	15.463	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6966	+		15794	9645	9172	9362							0.06502938211701803
LTPAAAAAA	9	Unmodified	_LTPAAAAAA_					0	0	0		ENST00000424946.1_1_12:105322435-105351963:-|nuORF;ENST00000432951.1_1_12:105325484-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.4250301861998	1	756.42503	755.417754	0.76665	0.00057991	3.2968	0.0024938	4.0634	0.0030737	756.4272150931306	31.404	0.14481	31.404	31.356	31.501	0	582	52	1.2729256	0.030565739	1.2729256	259.5792	0	6.2330627						111	7	2	NaN	NaN	NaN	0.45297	1	4164	4164		11.548	2.4253	1	8977.8			15795	6938	9173	9363	12476	12476					0.03026155288875998
LTPAAAAAA	9	Unmodified						0	0	0		ENST00000424946.1_1_12:105322435-105351963:-|nuORF;ENST00000432951.1_1_12:105325484-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	ENST00000424946.1_1_12:105322435-105351963:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	756.42503	755.417754	1.2481	0.00094413	4.0069	0.0030309	5.255	0.003975	756.4282897012063	31.403	0.12062	31.398	31.326	31.446	-0.0050716	579	40	1.2747238	0.023373842	1.2732043	259.94586		4.766449	-0.0030587	0.00021707	0.00013937	NaN	11.548	96	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6999.3			15796	6938	9173	9363							0.03026155288875998
LTPPCHHQP	9	Unmodified	_LTPPCHHQP_					0	0	0		ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.250368672	2	515.250369	1028.48618	1.0705	0.0005516	2.536	0.0013067	3.6065	0.0018583	515.7522305016748	26.963	0.16898	26.952	26.904	27.073	-0.010645	1308	43	0.83204526	0.025836706	0.8305259	337.73145	0	10.487213						120	8	3	NaN	NaN	NaN	0.47587	1	9511	9511		10.605	0	1	10210			15797	7645	9174	9364	12477	12477					-0.026919234029037398
LTPPCHHQP	9	Unmodified						0	0	0		ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.250369	1028.48618	1.5848	0.00081656	4.7713	0.0024584	6.3561	0.003275	515.2534253249589	26.964	0.12062	26.964	26.915	27.036	0	1311	43	0.83019954	0.025839448	0.83019954	336.98224		10.488373	0.0057282	0.0011365	-0.00016317	NaN	10.605	100	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9628.8			15798	7645	9174	9364							-0.026919234029037398
LTPPPGAK	8	Unmodified	_LTPPPGAK_					0	0	0		ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant;ENSG00000102870|ENST00000262525|ZNF629	ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.4614156925	1	780.461416	779.454139	1.8307	0.0014288	-3.5249	-0.002751	-1.6942	-0.0013222	780.459091375413	27.856	0.096558	27.846	27.846	27.943	-0.009552	585	37	1.2711272	0.02158153	1.2696078	259.06992	0	4.39859						70	5	2	NaN	NaN	NaN	0.84876	1	4405	4405		0.39566	0	1	4033.7			15799	1393	9175	9365	12478	12478					0.055590321856129776
LTPPPPSD	8	Unmodified	_LTPPPPSD_					0	0	0			REV__ENSG00000253293|ENST00000283921|HOXA10	REV__ENSG00000253293|ENST00000283921|HOXA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4196104573	1	823.41961	822.412334	1.9924	0.0016406	4.8073	0.0039584	6.7996	0.005599	823.4236664521009	51.229	0.14376	51.229	51.158	51.301	0	468	46	1.3411216	0.026869178	1.3411216	273.08832	0	5.471283						126	7	2	NaN	NaN	NaN	0.8439	1	5048	5048		3.1533	0	1	9632.9	+		15800	11365	9176	9366	12479	12479					-0.005975682935741133
LTPPPPSD	8	Unmodified						0	0	0			REV__ENSG00000253293|ENST00000283921|HOXA10	REV__ENSG00000253293|ENST00000283921|HOXA10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	823.41961	822.412334	1.9924	0.0016406	4.8073	0.0039584	6.7996	0.005599	823.4236664521009	51.229	0.14376	51.229	51.158	51.301	0	468	46	1.3411216	0.026869178	1.3411216	273.08832		5.471283	0	0	0	NaN	3.1533	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9632.9	+		15801	11365	9176	9366							-0.005975682935741133
LTPRELEIR	9	Unmodified	_LTPRELEIR_					0	0	0		ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.22414553399994	3	376.224146	1125.65061	2.1268	0.00080016	-3.0459	-0.0011459	-0.91904	-0.00034576	376.22344687325386	18.652	0.071936	18.652	18.628	18.7	0	1461	34	0.7376554	0.020416021	0.7376554	448.61	0	12.416168						67	4	2	NaN	NaN	NaN	0.38313	1	13929	13929		9.5705	2.7629	1	10047			15802	4510	9177	9367	12480	12480					0.0928079228867773
LTPTEAVHN	9	Unmodified	_LTPTEAVHN_					0	0	0			REV__ENST00000577700.5_1_7:45025577-45025664:-|nuORF	REV__ENST00000577700.5_1_7:45025577-45025664:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.25363125494994	2	491.253631	980.49271	1.2	0.00058951	-1.6649	-0.0008179	-0.4649	-0.00022839	491.2526971789276	15.46	0.16789	15.448	15.4	15.568	-0.012202	1287	40	0.8449601	0.023976922	0.84344065	343.19528	0	9.738617						205	8	3	NaN	NaN	NaN	0.33629	1	7729	7729		16.584	0.16752	1	22363	+		15803	12855	9178	9368	12481	12481					0.001682930294578
LTQDQLVWV	9	Unmodified	_LTQDQLVWV_					0	0	0			REV__ENSG00000136694|ENST00000259211|IL36A	REV__ENSG00000136694|ENST00000259211|IL36A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.30058144755	2	551.300581	1100.58661	1.9664	0.0010841	5.5889	0.0030811	7.5552	0.0041652	551.3034911740581	13.709	0.12015	13.709	13.661	13.781	0	1218	61	0.8873258	0.03680587	0.8873258	359.8583	0	14.926758						120	6	3	NaN	NaN	NaN	0.51576	1	12876	12876		8.962	2.5321	1	7947.1	+		15804	9663	9179	9369	12482	12482					0.04034012131751297
LTQDQLVWV	9	Unmodified						0	0	0			REV__ENSG00000136694|ENST00000259211|IL36A	REV__ENSG00000136694|ENST00000259211|IL36A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.300581	1100.58661	1.9664	0.0010841	5.5889	0.0030811	7.5552	0.0041652	551.3034911740581	13.709	0.12015	13.709	13.661	13.781	0	1218	61	0.8873258	0.03680587	0.8873258	359.8583		14.926758	-0.042825	0.00040338	0.00075972	NaN	8.962	120	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7947.1	+		15805	9663	9179	9369							0.04034012131751297
LTQDQLVWV	9	Unmodified						0	0	0			REV__ENSG00000136694|ENST00000259211|IL36A	REV__ENSG00000136694|ENST00000259211|IL36A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	551.300581	1100.58661	1.3818	0.0007618	4.6324	0.0025538	6.0142	0.0033156	551.303544684998	13.805	0.19171	13.794	13.723	13.914	-0.010673	1218	58	0.8873258	0.034963727	0.8858064	359.8583		14.1796875	0.042825	-0.00065123	-0.00075972	NaN	8.962	151	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11008	+		15806	9663	9179	9369							0.04034012131751297
LTRILAEAE	9	Unmodified	_LTRILAEAE_					0	0	0		ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.29275641544996	2	508.292756	1014.57096	1.418	0.00072077	-10.67	-0.0054234	-9.2519	-0.0047027	508.2872637029558	21.2	0.21666	21.186	21.089	21.306	-0.014004	1539	121	0.68933374	0.074349165	0.6878143	279.85483	0	30.184174						915	10	4	NaN	NaN	NaN	0.60736	1	8990	8990		5.1889	0	1	255260			15807	5166	9180	9370	12483	12483					0.06425725614701605
LTRILAEAE	9	Unmodified						0	0	0		ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.292756	1014.57096	1.913	0.00097234	-11.29	-0.0057386	-9.377	-0.0047663	508.2871065309835	21.055	0.21678	21.055	21.007	21.224	0	1542	127	0.6874725	0.07807511	0.6874725	279.0992		31.696808	-0.065365	-0.00037974	-0.00017091	NaN	5.1889	782	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256870			15808	5166	9180	9370							0.06425725614701605
LTRVNPPNW	9	Unmodified	_LTRVNPPNW_					0	0	0		ENST00000464646.1_1_6:5002436-5003872:-|nuORF	ENST00000464646.1_1_6:5002436-5003872:-|nuORF	ENST00000464646.1_1_6:5002436-5003872:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7985402851001	2	548.79854	1095.58253	2.1669	0.0011892	-11.5	-0.0063109	-9.3326	-0.0051217	548.7923198619643	23.007	0.26495	23.007	22.863	23.128	0	1251	67	0.8670771	0.04050839	0.8670771	351.6663	0	16.42926						439	12	4	NaN	NaN	NaN	0.20577	1	12660	12660		24.961	1.1106	1	318760			15809	7101	9181	9371	12484	12484					0.03855967428717122
LTRWLIWTLW	10	Unmodified	_LTRWLIWTLW_					0	0	0		ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.26768561483334	3	463.267686	1386.78123	1.1625	0.00053856	-2.4746	-0.0011464	-1.3121	-0.00060784	463.2665206289062	21.97	0.072239	21.97	21.946	22.019	0	1476	55	0.72837335	0.03341353	0.72837335	441.95605	0	20.274384						89	4	2	NaN	NaN	NaN	0.72095	1	19955	19955		6.6174	0.26108	1	7922.9			15810	6222	9182	9372	12485	12485					0.1033080800755215
LTTAGTKA	8	Unmodified	_LTTAGTKA_					0	0	0		ENST00000400423.6_1_21:43540943-43557727:+|nuORF;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.4355948725	1	762.435595	761.428318	1.3937	0.0010626	-3.6067	-0.0027499	-2.213	-0.0016873	762.4340936379357	35.844	0.048199	35.844	35.844	35.892	0	972	40	1.0375156	0.023709416	1.0375156	211.54385	0	4.8342285						50	3	2	NaN	NaN	NaN	0.84455	1	4230	4230		2.7852	0	1	3349.4			15811	5076	9183	9373	12486	12486					0.03806137943331578
LTTDWVHLWYI	11	Unmodified	_LTTDWVHLWYI_					0	0	0		nc|ENSG00000165685|Q4KMG9-2|TMEM52B;ENSG00000165685|ENST00000543484|TMEM52B	nc|ENSG00000165685|Q4KMG9-2|TMEM52B	nc|ENSG00000165685|Q4KMG9-2|TMEM52B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.8744448824001	2	723.874445	1445.73434	1.1914	0.00086239	2.0967	0.0015177	3.288	0.0023801	723.875889615879	34.781	0.16864	34.78	34.708	34.877	-0.0006485	1041	46	0.9955231	0.027418911	0.99400365	402.54395	0	11.086945						248	8	3	NaN	NaN	NaN	0.19696	1	19398	19398		30.61	8.8391	1	32702			15812	4421	9184	9374	12487	12487					0.02929903665767597
LTTDWVHLWYI	11	Unmodified						0	0	0		nc|ENSG00000165685|Q4KMG9-2|TMEM52B;ENSG00000165685|ENST00000543484|TMEM52B	nc|ENSG00000165685|Q4KMG9-2|TMEM52B	nc|ENSG00000165685|Q4KMG9-2|TMEM52B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	723.874445	1445.73434	1.1236	0.00081336	2.3489	0.0017003	3.4726	0.0025137	723.8767687038294	34.782	0.19291	34.782	34.71	34.903	0	1044	49	0.99369496	0.029248416	0.99369496	401.80472		11.826721	0.0010413	0.00021817	-0.00015434	NaN	30.61	268	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33369			15813	4421	9184	9374							0.02929903665767597
LTTSSSTTHL	10	Unmodified	_LTTSSSTTHL_					0	0	0			REV__nc|ENSG00000067208|O60447|EVI5	REV__nc|ENSG00000067208|O60447|EVI5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	349.84874434513335	3	349.848744	1046.5244	1.7604	0.00061586	-10.907	-0.0038159	-9.1468	-0.0032	349.8450250446906	12.27	0.14389	12.261	12.213	12.357	-0.0088415	1491	40	0.7190863	0.024151623	0.71756685	437.71616	0	14.7013855						80	7	2	NaN	NaN	NaN	0.65442	1	10269	10269		6.1406	0.22084	1	6261.3	+		15814	8548	9185	9375	12488	12488					0.0030024099276033667
LTVAIVSY	8	Unmodified	_LTVAIVSY_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.25511131139996	2	433.255111	864.49567	0.75505	0.00032713	-1.0452	-0.00045285	-0.29017	-0.00012572	433.2550393311756	35.505	0.048256	35.505	35.457	35.505	0.00052643	1395	127	0.7784366	0.07784665	0.77691716	316.76172	0	31.677399						253	3	4	NaN	NaN	NaN	0.80071	1	5458	5458		9.1232	0	1	247440			15815	1036	9186	9376	12489	12489					0.058001681542691585
LTVDGNQVEA	10	Unmodified	_LTVDGNQVEA_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.516030038	1	1045.51603	1044.50875	1.6978	0.0017751	7.1851	0.0075121	8.8829	0.0092872	1045.5238340047583	29.401	0.16899	29.401	29.353	29.522	0	147	97	1.5316714	0.05664575	1.5316714	310.79755	0	11.494202						274	8	2	NaN	NaN	NaN	0.22448	1	10397	10397		33.425	0.97255	1	52407			15816	5641	9187	9377	12490	12490					-0.011720455242766548
LTVEWPCLP	9	Unmodified	_LTVEWPCLP_					0	0	0			REV__ENST00000495966.1_1_1:91486681-91487568:-|nuORF	REV__ENST00000495966.1_1_1:91486681-91487568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5386797355	1	1057.53868	1056.5314	1.6	0.0016921	-0.52795	-0.00055833	1.0721	0.0011338	1057.5384566105768	32.201	0.19301	32.201	32.104	32.297	0	171	61	1.5174994	0.03544116	1.5174994	307.87622	0	7.19046						247	9	3	NaN	NaN	NaN	0.10956	1	10940	10940		34.439	8.3238	1	20252	+		15817	12496	9188	9378	12491	12491					0.005398823396262742
LTVEWPCLP	9	Unmodified						0	0	0			REV__ENST00000495966.1_1_1:91486681-91487568:-|nuORF	REV__ENST00000495966.1_1_1:91486681-91487568:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1057.53868	1056.5314	1.6	0.0016921	-0.52795	-0.00055833	1.0721	0.0011338	1057.5384566105768	32.201	0.19301	32.201	32.104	32.297	0	171	61	1.5174994	0.03544116	1.5174994	307.87622		7.19046	0.01451	-6.1887E-05	-0.0010123	NaN	34.439	247	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20252	+		15818	12496	9188	9378							0.005398823396262742
LTVGGGHL	8	Unmodified	_LTVGGGHL_					0	0	0		ENST00000522858.5_2_5:153418277-153418331:-|nuORF	ENST00000522858.5_2_5:153418277-153418331:-|nuORF	ENST00000522858.5_2_5:153418277-153418331:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.21632050190004	2	377.216321	752.418088	1.4108	0.00053218	-4.8446	-0.0018275	-3.4338	-0.0012953	377.2146224516345	21.031	0.26472	21.031	20.911	21.175	0	1443	79	0.7487872	0.048222125	0.7487872	305.40475	0	19.668152						377	12	3	NaN	NaN	NaN	0.84651	1	4107	4107		1.6704	0.2308	1	51245			15819	7405	9189	9379	12492	12492					0.03197575008766762
LTVHAPFP	8	Unmodified	_LTVHAPFP_					0	0	0		ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.487964794	1	881.487965	880.480688	-0.26216	-0.00023109	-0.2424	-0.00021367	-0.50456	-0.00044476	881.4872397521065	56.059	0.047989	56.058	56.034	56.082	-0.00056458	390	49	1.3876231	0.028576732	1.3861036	282.25092	0	5.8126526						90	3	3	NaN	NaN	NaN	0.84692	1	5686	5686		1.4396	0.19772	1	9431.5			15820	5922	9190	9380	12493	12493					0.03566721076947488
LTVQFCPVL	9	Unmodified	_LTVQFCPVL_					0	0	0			REV__ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	REV__ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2833458221	2	510.283346	1018.55214	1.0405	0.00053094	-2.5125	-0.0012821	-1.472	-0.00075113	510.2819016228858	35.482	0.096493	35.482	35.434	35.53	0	1308	61	0.83204526	0.0369215	0.83204526	337.77496	0	14.988556						138	5	3	NaN	NaN	NaN	0.2961	1	9326	9326		19.164	2.5794	1	11893	+		15821	11015	9191	9381	12494	12494					0.043604727192928294
LTVQFCPVL	9	Unmodified						0	0	0			REV__ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	REV__ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.283346	1018.55214	1.0405	0.00053094	-2.5125	-0.0012821	-1.472	-0.00075113	510.2819016228858	35.482	0.096493	35.482	35.434	35.53	0	1308	61	0.83204526	0.0369215	0.83204526	337.77496		14.988556	0	0	0	NaN	19.164	138	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11893	+		15822	11015	9191	9381							0.043604727192928294
LTVTGGLA	8	Unmodified	_LTVTGGLA_					0	0	0			REV__nc|ENSG00000137070|Q14626-2|IL11RA	REV__nc|ENSG00000137070|Q14626-2|IL11RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.4297812131001	1	731.429781	730.422505	1.1577	0.00084679	2.8821	0.002108	4.0398	0.0029548	731.4319837364723	32.393	0.072399	32.389	32.365	32.437	-0.0037613	570	40	1.2801172	0.023368835	1.2785977	261.20496	0	4.768341						79	4	2	NaN	NaN	NaN	0.82797	1	3687	3687		5.4659	2.3125	1	6679.7	+		15823	9674	9192	9382	12495	12495					0.04651039431666959
LTVTGGLA	8	Unmodified						0	0	0			REV__nc|ENSG00000137070|Q14626-2|IL11RA	REV__nc|ENSG00000137070|Q14626-2|IL11RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	731.429781	730.422505	1.1286	0.00082549	4.8059	0.0035152	5.9345	0.0043407	731.4334234965874	32.394	0.0965	32.394	32.37	32.466	0	573	43	1.2783196	0.025167823	1.2783196	260.83813		5.135437	0.0024245	0.00075772	-0.00013908	NaN	5.4659	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5806	+		15824	9674	9192	9382							0.04651039431666959
LTVTGGLA	8	Unmodified						0	0	0			REV__nc|ENSG00000137070|Q14626-2|IL11RA	REV__nc|ENSG00000137070|Q14626-2|IL11RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	731.429781	730.422505	1.1577	0.00084679	2.8821	0.002108	4.0398	0.0029548	731.4319837364723	32.393	0.072399	32.389	32.365	32.437	-0.0037613	570	40	1.2801172	0.023368835	1.2785977	261.20496		4.768341	-0.0024245	-0.0006494	0.00013908	NaN	5.4659	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6679.7	+		15825	9674	9192	9382							0.04651039431666959
LTYELRNW	8	Unmodified	_LTYELRNW_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7850985588501	2	547.785099	1093.55564	1.5514	0.00084985	-2.902	-0.0015897	-1.3505	-0.00073981	547.7839028240777	21.272	0.19236	21.258	21.21	21.402	-0.014004	1284	112	0.8468043	0.06816828	0.8452849	343.452	0	27.648071						686	9	4	NaN	NaN	NaN	0.39717	1	12236	12236		36.586	2.8882	1	151550			15826	2204	9193	9383	12496	12496					0.012608588175226032
LTYFILIMD	9	Unmodified	_LTYFILIMD_					0	0	0			REV__ENST00000489450.1_1_1:76254988-76255843:+|nuORF	REV__ENST00000489450.1_1_1:76254988-76255843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.8041110539501	2	564.804111	1127.59367	0.80269	0.00045336	5.4864	0.0030987	6.2891	0.0035521	564.8074350360024	35.698	0.12053	35.698	35.674	35.794	0.00053024	1233	40	0.87812483	0.023930311	0.8766054	356.0213	0	9.702148						130	6	3	NaN	NaN	NaN	0.39244	1	13562	13562		14.042	1.9929	1	12296	+		15827	12453	9194	9384	12497	12497					0.03497608687985121
LTYFTLQF	8	Unmodified	_LTYFTLQF_					0	0	0		ENST00000367739.8_2_6:137525557-137525587:-|nuORF	ENST00000367739.8_2_6:137525557-137525587:-|nuORF	ENST00000367739.8_2_6:137525557-137525587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7736682053	2	516.773668	1031.53278	1.9896	0.0010282	6.2055	0.0032068	8.1951	0.004235	516.7767388399441	16.638	0.1919	16.638	16.59	16.782	0	1299	46	0.8375814	0.027674615	0.8375814	339.9653	0	11.232849						160	9	2	NaN	NaN	NaN	0.63138	1	9854	9854		23.334	1.4994	1	22520			15828	6626	9195	9385	12498	12498					0.018278397000358382
LVAAAMMLLAW	11	Unmodified	_LVAAAMMLLAW_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3272303970001	2	595.32723	1188.63991	1.1425	0.00068018	-9.8729	-0.0058776	-8.7304	-0.0051974	595.3208984387551	29.329	0.16889	29.329	29.256	29.425	0	1167	82	0.91857195	0.049572706	0.91857195	372.1889	0	20.085968						360	8	3	NaN	NaN	NaN	0.44178	1	16124	16124		20.555	1.4371	1	56464			15829	3808	9196	9386	12499	12499					0.05313350318419907
LVAAAMMLLAW	11	Unmodified						0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.32723	1188.63991	1.2131	0.00072222	-11.473	-0.0068303	-10.26	-0.0061081	595.8227994784326	29.231	0.096518	29.224	29.2	29.296	-0.0077209	1167	37	0.91857195	0.022031128	0.9170525	372.1889		8.926636	-0.052511	-0.0016689	-0.00075972	NaN	20.555	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4471.4			15830	3808	9196	9386							0.05313350318419907
LVAEGLATRR	10	Unmodified	_LVAEGLATRR_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.3249222111001	2	543.324922	1084.63529	1.3929	0.00075677	-3.06	-0.0016626	-1.6671	-0.00090578	543.3236546764991	14.429	0.095916	14.429	14.405	14.501	0	1170	34	0.91673553	0.020202816	0.91673553	371.85318	0	8.194824						67	5	2	NaN	NaN	NaN	0.58645	1	12183	12183		15.822	0.35925	1	6575			15831	5685	9197	9387	12500	12500					0.09635925491511443
LVAEGLATRR	10	Unmodified						0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.324922	1084.63529	1.708	0.00092799	-0.7691	-0.00041787	0.93889	0.00051012	543.3242486340234	14.476	0.095874	14.465	14.441	14.537	-0.011218	1170	34	0.91673553	0.020202816	0.9152161	371.85315		8.194824	0.017804	0.00082809	-0.00075972	NaN	15.822	52	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4609.9			15832	5685	9197	9387							0.09635925491511443
LVAFGGGG	8	Unmodified	_LVAFGGGG_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479002	1	677.361702	676.354425	1.4187	0.00096098	7.4066	0.005017	8.8253	0.0059779	677.3662074998068	23.127	0.14455	23.114	23.017	23.162	-0.013296	756	85	1.1683017	0.050654173	1.1667823	238.73993	0	10.351074						163	7	2	NaN	NaN	NaN	0.84876	1	2678	2678		0.39566	0	1	13579			15833	2356	9198	9388	12501	12501					0.003302145716816085
LVAFGGGG	8	Unmodified						0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	677.361702	676.354425	1.781	0.0012064	8.0634	0.0054618	9.8444	0.0066682	677.3670534627969	23.103	0.12055	23.103	23.079	23.2	0	759	85	1.1664921	0.05066502	1.1664921	238.37015		10.353302	-0.005098	0.000219	-0.00014506	NaN	0.39566	147	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11916			15834	2356	9198	9388							0.003302145716816085
LVAGHGCA	8	Unmodified	_LVAGHGCA_					0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.18142343955	2	364.181423	726.348294	0.070171	2.5555E-05	-0.77599	-0.0002826	-0.70582	-0.00025705	364.18240335577684	54.954	0.048027	54.953	54.929	54.977	-0.00061798	1527	40	0.69677675	0.024185777	0.6952573	284.37347	0	9.87088						68	3	3	NaN	NaN	NaN	0.84651	1	3625	3625		1.6704	0.7445	1	6857.7	+		15835	11317	9199	9389	12502	12502					-0.02582626931507548
LVAGHGCA	8	Unmodified						0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	364.181423	726.348294	1.6767	0.00061062	2.2098	0.00080477	3.8865	0.0014154	364.18273177715827	54.956	0.047932	54.956	54.932	54.98	0	1530	37	0.6949163	0.022326529	0.6949163	283.61417		9.112061	0.0012026	0.00075353	-0.0001705	NaN	1.6704	77	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8076.8	+		15836	11317	9199	9389							-0.02582626931507548
LVAGHGCA	8	Unmodified						0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	364.181423	726.348294	0.070171	2.5555E-05	-0.77599	-0.0002826	-0.70582	-0.00025705	364.18240335577684	54.954	0.048027	54.953	54.929	54.977	-0.00061798	1527	40	0.69677675	0.024185777	0.6952573	284.37347		9.87088	-0.0012026	-0.0014212	0.0001705	NaN	1.6704	68	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6857.7	+		15837	11317	9199	9389							-0.02582626931507548
LVAIVVGVGR	10	Unmodified	_LVAIVVGVGR_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.8240267541001	2	491.824027	981.633501	2.0758	0.001021	-1.25	-0.00061476	0.82589	0.00040619	491.82337842215117	23.007	0.07213	23.007	22.983	23.055	0	1341	31	0.8117308	0.018478692	0.8117308	329.6933	0	7.5053406						55	4	2	NaN	NaN	NaN	0.74182	1	7956	7956		5.1889	1.9773	1	5629.4			15838	3343	9200	9390	12503	12503					0.1419491647357063
LVAIVVGVGR	10	Unmodified	_LVAIVVGVGR_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.8240267541001	2	491.824027	981.633501	1.4679	0.00072194	1.7132	0.00084261	3.1811	0.0015645	491.82507075674766	23.031	0.072262	23.017	22.993	23.065	-0.013294	1341	31	0.8117308	0.018478692	0.81021136	329.6933	0	7.5053406						50	4	2	NaN	NaN	NaN	0.74182	1	7786	7786		5.1889	2.7274	1	5137.6			15839	3343	9200	9390	12504	12504					0.1419491647357063
LVAPQDLVQ	9	Unmodified	_LVAPQDLVQ_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5567726407	1	982.556773	981.549496	2.1966	0.0021583	-1.1799	-0.0011593	1.0167	0.00099897	982.5551899815042	26.384	0.07238	26.384	26.36	26.432	0	231	37	1.4820169	0.021311998	1.4820169	300.9733	0	4.3281555						67	4	2	NaN	NaN	NaN	0.2345	1	7945	7945		23.118	2.6043	1	6911.6			15840	7041	9201	9391	12505	12505					0.05798340585988626
LVAPQDLVQ	9	Unmodified						0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	982.556773	981.549496	2.0088	0.0019737	-1.8131	-0.0017815	0.19563	0.00019222	982.5566254760661	26.384	0.072399	26.373	26.349	26.421	-0.011137	228	46	1.4837929	0.026641488	1.4822735	301.33395		5.410431	-0.0057035	-0.00029134	0.00012824	NaN	23.118	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8101			15841	7041	9201	9391							0.05798340585988626
LVASGSSS	8	Unmodified	_LVASGSSS_					0	0	0			REV__ENSG00000170044|ENST00000466937|ZPLD1	REV__ENSG00000170044|ENST00000466937|ZPLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.3570102005001	1	707.35701	706.349734	0.24977	0.00017668	-1.8424	-0.0013032	-1.5926	-0.0011266	707.3552681100498	47.418	0.047867	47.426	47.378	47.426	0.007412	735	34	1.1809633	0.019888043	1.1794438	241.12404	0	4.060684						43	3	2	NaN	NaN	NaN	0.84876	1	3278	3278		0.39566	0	1	2775.3	+		15842	10570	9202	9392	12506	12506					-0.015187143617481524
LVASVGDDL	9	Unmodified	_LVASVGDDL_					0	0	0		ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4672889314	1	888.467289	887.460012	2.2098	0.0019634	-1.2772	-0.0011348	0.9326	0.00082859	888.4654595859336	23.2	0.096403	23.2	23.152	23.248	0	363	64	1.4036897	0.037484884	1.4036897	285.48444	0	7.623749						122	5	3	NaN	NaN	NaN	0.023074	1	5905	5905		68.108	15.35	1	10777			15843	2144	9203	9393	12507	12507					0.011780859066220728
LVASVGDDL	9	Unmodified	_LVASVGDDL_					0	0	0		ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	ENSG00000117475|ENST00000367808|BLZF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4672889314	1	888.467289	887.460012	1.8981	0.0016864	0.049367	4.3861E-05	1.9474	0.0017302	888.4669214699227	23.199	0.096527	23.186	23.162	23.258	-0.013294	366	61	1.4019053	0.03569424	1.4003859	285.12152	0	7.259552						107	5	2	NaN	NaN	NaN	0.01047	1	5786	5786		91.429	29.452	1	10588			15844	2144	9203	9393	12508	12508					0.011780859066220728
LVAVPLLLV	9	Unmodified	_LVAVPLLLV_					0	0	0			REV__ENST00000564160.1_1_16:2722719-2722887:-|nuORF	REV__ENST00000564160.1_1_16:2722719-2722887:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.6492164629003	1	936.649216	935.64194	0.90773	0.00085022	0.87113	0.00081594	1.7789	0.0016662	936.6502563321744	40.128	0.048103	40.128	40.104	40.152	0	249	37	1.4713576	0.021325588	1.4713576	299.01144	0	4.333832						53	3	2	NaN	NaN	NaN	0.10053	1	6748	6748		35.745	0	1	4024.8	+		15845	12350	9204	9394	12509	12509					0.1715447039019864
LVAVSRPYN	9	Unmodified	_LVAVSRPYN_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.7876412478	2	509.787641	1017.56073	0.53617	0.00027333	-9.6791	-0.0049343	-9.1429	-0.0046609	510.2834208807651	35.48	0.14478	35.481	35.433	35.577	0.00052643	1308	58	0.83204526	0.035069704	0.8305259	337.7794	0	14.2369995						170	7	3	NaN	NaN	NaN	0.39244	1	9104	9104		14.042	3.4366	1	12213	+		15846	9311	9205	9395	12510	12510					0.05265162680143476
LVAWRVWR	8	Unmodified	_LVAWRVWR_					0	0	0			REV__nc|ENSG00000198221|Q9Y6Z5-2|AFDN-DT	REV__nc|ENSG00000198221|Q9Y6Z5-2|AFDN-DT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3219855916501	2	543.321986	1084.62942	1.708	0.00092799	4.6358	0.0025187	6.3438	0.0034467	543.3242486340234	14.476	0.095874	14.465	14.441	14.537	-0.011218	1170	34	0.91673553	0.020202816	0.9152161	371.85315	0	8.194824						52	5	2	NaN	NaN	NaN	0.62311	1	11872	11872		23.85	4.7321	1	4609.9	+		15847	13213	9206	9396	12511	12511					0.09048871770505684
LVCSRGLF	8	Unmodified	_LVCSRGLF_					0	0	0			REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4865845855002	1	894.486585	893.479308	1.6189	0.001448	5.4401	0.0048661	7.0589	0.0063141	894.4910485088953	26.795	0.048677	26.795	26.77	26.819	0	363	46	1.4036897	0.026763558	1.4036897	285.45505	0	5.4426575						60	3	2	NaN	NaN	NaN	0.78967	1	5978	5978		10.605	0.5534	1	4753.3	+		15848	13166	9207	9397	12512	12512					0.02830763716542606
LVCTYFGS	8	Carbamidomethyl (C)	_LVC(Carbamidomethyl (C))TYFGS_	LVC(1)TYFGS		LVC(41)TYFGS		0	1	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4338803130001	1	946.43388	945.426604	1.6727	0.0015831	0.088184	8.346E-05	1.7609	0.0016666	946.4340863663168	28.701	0.28957	28.701	28.653	28.943	0	318	151	1.4304334	0.088998914	1.4304334	290.65115	0	18.08377						487	13	4	NaN	NaN	NaN	0.30832	1	6946	6946		41.46	13.671	1	60128	+		15849	11079	9208	9398	12513	12513					-0.04829239136927299
LVCTYFGS	8	Carbamidomethyl (C)						0	1	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	946.43388	945.426604	1.6727	0.0015831	0.088184	8.346E-05	1.7609	0.0016666	946.4340863663168	28.701	0.28957	28.701	28.653	28.943	0	318	151	1.4304334	0.088998914	1.4304334	290.65115		18.08377	0.0045432	0.0001086	-0.00013098	NaN	41.46	487	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60128	+		15850	11079	9208	9398							-0.04829239136927299
LVCTYFGS	8	Carbamidomethyl (C)						0	1	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	946.43388	945.426604	1.3663	0.0012931	-0.097938	-9.2692E-05	1.2683	0.0012004	946.4340641601602	28.701	0.26546	28.692	28.644	28.909	-0.0083504	315	148	1.4322147	0.08720493	1.4306953	291.01312		17.719269	-0.0045432	-6.7556E-05	0.00013098	NaN	41.46	658	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93756	+		15851	11079	9208	9398							-0.04829239136927299
LVDGQELAV	9	Unmodified	_LVDGQELAV_					0	0	0		nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	nc|ENSG00000144744|Q8TBC4-2|UBA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971	1	943.509488	942.502212	2.7237	0.0025698	-2.9636	-0.0027962	-0.23987	-0.00022632	943.5052320082104	23.248	0.048258	23.234	23.234	23.283	-0.013294	300	37	1.4411188	0.021361947	1.4395994	292.83542	0	4.3407288						46	3	2	NaN	NaN	NaN	0.13602	1	6744	6744		30.61	4.4952	1	3154.3			15852	3491	9209	9399	12514	12514					0.028660613149895653
LVDQDTTSF	9	Unmodified	_LVDQDTTSF_					0	0	0		ENST00000484386.1_1_15:44097294-44102132:-|nuORF;ENSG00000140259|ENST00000267812|MFAP1	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.4785818991998	1	1025.47858	1024.47131	1.8441	0.001891	-4.4267	-0.0045395	-2.5826	-0.0026484	1025.473591219013	20.67	0.16872	20.67	20.646	20.814	0	234	88	1.4802408	0.051545262	1.4802408	300.43817	0	10.461945						242	8	2	NaN	NaN	NaN	0.27507	1	9542	9542		20.513	6.4717	1	18460			15853	3254	9210	9400	12515	12515					-0.03995136789922071
LVDQDTTSF	9	Unmodified	_LVDQDTTSF_					0	0	0		ENST00000484386.1_1_15:44097294-44102132:-|nuORF;ENSG00000140259|ENST00000267812|MFAP1	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENST00000484386.1_1_15:44097294-44102132:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.4785818991998	1	1025.47858	1024.47131	1.2245	0.0012557	-3.6779	-0.0037716	-2.4534	-0.0025159	1025.4741957757744	20.694	0.16874	20.68	20.632	20.801	-0.014088	234	94	1.4802408	0.055094242	1.4787214	300.43817	0	11.182251						183	8	2	NaN	NaN	NaN	0.064504	1	9361	9361		40.957	19.122	1	16633			15854	3254	9210	9400	12516	12516					-0.03995136789922071
LVDREVVSL	9	Unmodified	_LVDREVVSL_					0	0	0		ENST00000592895.5_1_19:1987398-1987842:-|nuORF;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;ENSG00000133243|ENST00000255608|BTBD2	ENST00000592895.5_1_19:1987398-1987842:-|nuORF	ENST00000592895.5_1_19:1987398-1987842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3005814475501	2	515.300581	1028.58661	1.6863	0.00086895	-2.0472	-0.0010549	-0.3609	-0.00018597	515.30018174483	21.175	0.16863	21.175	21.079	21.248	0	1275	52	0.85233563	0.0313375	0.85233563	345.96698	0	12.720001						165	8	3	NaN	NaN	NaN	0.25424	1	9728	9728		21.85	4.0514	1	20570			15855	2818	9211	9401	12517	12517					0.07346012131779389
LVDREVVSL	9	Unmodified	_LVDREVVSL_					0	0	0		ENST00000592895.5_1_19:1987398-1987842:-|nuORF;nc|ENSG00000133243|Q9BX70-2|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;ENSG00000133243|ENST00000255608|BTBD2	ENST00000592895.5_1_19:1987398-1987842:-|nuORF	ENST00000592895.5_1_19:1987398-1987842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.3005814475501	2	515.300581	1028.58661	1.0445	0.00053824	-1.4442	-0.00074418	-0.39966	-0.00020594	515.3002216764189	21.176	0.16851	21.162	21.089	21.258	-0.014004	1275	61	0.85233563	0.036861658	0.8508162	345.96698	0	14.96228						159	8	3	NaN	NaN	NaN	0.29341	1	9530	9530		19.336	0.21812	1	20101			15856	2818	9211	9401	12518	12518					0.07346012131779389
LVDSWTEYQMV	11	Unmodified	_LVDSWTEYQMV_					0	0	0		GLYATL1|p.P50T|1|0.21|ENSG00000166840|chr11:58947927-58947927|C/A|missense_variant	GLYATL1|p.P50T|1|0.21|ENSG00000166840|chr11:58947927-58947927|C/A|missense_variant	GLYATL1|p.P50T|1|0.21|ENSG00000166840|chr11:58947927-58947927|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.81847802695	2	685.818478	1369.6224	2.091	0.0014341	-4.2537	-0.0029173	-2.1627	-0.0014832	685.815970431335	17.141	0.072042	17.141	17.117	17.189	0	1119	64	0.9479278	0.038506687	0.9479278	383.5004	0	15.578552						97	4	2	NaN	NaN	NaN	0.73057	1	19792	19792		5.4499	3.3474	1	10899			15857	7807	9212	9402	12519	12519					-0.047623184735812174
LVEDIDTERY	10	Unmodified	_LVEDIDTERY_					0	0	0			REV__ENSG00000059915|ENST00000020673|PSD	REV__ENSG00000059915|ENST00000020673|PSD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.8064248967	2	626.806425	1251.5983	1.1679	0.00073207	-10.614	-0.0066528	-9.4458	-0.0059207	626.8007134413555	24.912	0.12067	24.9	24.875	24.996	-0.012392	1137	73	0.9369253	0.044028997	0.93540585	379.40616	0	17.829437						296	6	4	NaN	NaN	NaN	0.67523	1	17053	17053		9.746	0.13435	1	50750	+		15858	8519	9213	9403	12520	12520					-0.017438356355796714
LVEGGAGL	8	Unmodified	_LVEGGAGL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3984810847002	1	715.398481	714.391205	1.2307	0.00088044	1.3126	0.00093902	2.5433	0.0018195	715.399376715029	26.48	0.14479	26.47	26.421	26.566	-0.010645	585	58	1.2711272	0.034179926	1.2696078	259.47775	0	6.9772186						127	7	2	NaN	NaN	NaN	0.82797	1	3436	3436		5.4659	0	1	12631	+		15859	10977	9214	9404	12521	12521					0.022584663975862895
LVEGGEIEL	9	Unmodified	_LVEGGEIEL_					0	0	0		VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.5091537461	1	958.509154	957.501877	2.3798	0.0022811	-3.8582	-0.0036982	-1.4784	-0.0014171	958.5058732295554	25.467	0.072399	25.455	25.431	25.503	-0.012011	291	49	1.446459	0.028476596	1.4449396	293.85422	0	5.7851257						80	4	2	NaN	NaN	NaN	0.060816	1	7139	7139		42.318	14.529	1	5719.3			15860	1779	9215	9405	12522	12522					0.02142641595139594
LVEGGEIEL	9	Unmodified						0	0	0		VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	958.509154	957.501877	1.8213	0.0017458	-2.2898	-0.0021948	-0.46842	-0.00044899	958.5075361778871	25.467	0.04826	25.467	25.467	25.515	0	297	49	1.4428991	0.028479576	1.4428991	293.13098		5.7857666	0.0061528	0.00088739	-0.0010203	NaN	42.318	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5109.9			15861	1779	9215	9405							0.02142641595139594
LVEGHGRW	8	Unmodified	_LVEGHGRW_					0	0	0			REV__ENST00000252593.6_1_19:17513949-17514009:-|nuORF	REV__ENST00000252593.6_1_19:17513949-17514009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4951754369001	1	953.495175	952.487899	1.6964	0.0016175	-5.9239	-0.0056484	-4.2275	-0.0040309	953.4888968825177	21.368	0.048063	21.368	21.344	21.392	0	312	43	1.433996	0.024932861	1.433996	291.34406	0	5.0655823						52	3	2	NaN	NaN	NaN	0.81251	1	7149	7149		7.5404	1.8462	1	2916.1	+		15862	11504	9216	9406	12523	12523					0.009754536773812106
LVEPEIVELL	10	Unmodified	_LVEPEIVELL_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3393722570502	2	577.339372	1152.66419	1.7789	0.001027	-7.1472	-0.0041263	-5.3683	-0.0030993	577.3352702902009	47.947	0.11978	47.947	47.899	48.019	0	1209	43	0.892844	0.025744617	0.892844	361.8939	0	10.434998						93	6	2	NaN	NaN	NaN	0.69717	1	14900	14900		8.2448	0	1	6228	+		15863	9151	9217	9407	12524	12524					0.0939660527731121
LVEPIGGVR	9	Unmodified	_LVEPIGGVR_					0	0	0			REV__nc|ENSG00000165195|P37287-3|PIGA	REV__nc|ENSG00000165195|P37287-3|PIGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.5621923696002	1	939.562192	938.554916	1.5516	0.0014578	-0.75053	-0.00070517	0.80105	0.00075263	939.561149740072	47.252	0.19165	47.252	47.18	47.372	0	219	55	1.4891195	0.031954646	1.4891195	302.60745	0	6.493561						277	9	3	NaN	NaN	NaN	0.56671	1	6797	6797		6.8632	1.9535	1	27278	+		15864	10372	9218	9408	12525	12525					0.08318064168486217
LVEPIGGVR	9	Unmodified						0	0	0			REV__nc|ENSG00000165195|P37287-3|PIGA	REV__nc|ENSG00000165195|P37287-3|PIGA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	939.562192	938.554916	1.5516	0.0014578	-0.75053	-0.00070517	0.80105	0.00075263	939.561149740072	47.252	0.19165	47.252	47.18	47.372	0	219	55	1.4891195	0.031954646	1.4891195	302.60745		6.493561	0.0089565	-0.00024583	-0.00012786	NaN	6.8632	277	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27278	+		15865	10372	9218	9408							0.08318064168486217
LVEPLVCP	8	Unmodified	_LVEPLVCP_					0	0	0			REV__ENST00000486717.5_1_20:30795744-30803181:+|nuORF	REV__ENST00000486717.5_1_20:30795744-30803181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.24368934535	2	435.243689	868.472826	1.3086	0.00056956	5.131	0.0022332	6.4396	0.0028028	435.24578780207503	25.081	0.096518	25.081	25.057	25.153	0	1428	37	0.7580582	0.022244275	0.7580582	308.44724	0	9.050995						61	5	2	NaN	NaN	NaN	0.8439	1	5645	5645		3.1533	0	1	6542.7	+		15866	12429	9219	9409	12526	12526					0.03332825765153302
LVEPLVCP	8	Unmodified						0	0	0			REV__ENST00000486717.5_1_20:30795744-30803181:+|nuORF	REV__ENST00000486717.5_1_20:30795744-30803181:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	435.243689	868.472826	1.3086	0.00056956	5.131	0.0022332	6.4396	0.0028028	435.24578780207503	25.081	0.096518	25.081	25.057	25.153	0	1428	37	0.7580582	0.022244275	0.7580582	308.44724		9.050995	-0.018001	-0.0001961	0.00075972	NaN	3.1533	61	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6542.7	+		15867	12429	9219	9409							0.03332825765153302
LVEPSSVAL	9	Unmodified	_LVEPSSVAL_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5193245019001	1	914.519325	913.512048	1.3645	0.0012478	0.49556	0.0004532	1.86	0.001701	914.5198419848929	24.357	0.096527	24.357	24.309	24.406	0	360	52	1.405474	0.03032887	1.405474	285.72284	0	6.165619						125	5	3	NaN	NaN	NaN	0.04947	1	6301	6301		47.136	8.2179	1	13830			15868	2546	9220	9410	12527	12527					0.05183249320384675
LVEPSSVAL	9	Unmodified	_LVEPSSVAL_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5193245019001	1	914.519325	913.512048	1.5581	0.0014249	-0.91723	-0.00083883	0.64085	0.00058607	914.5177994745113	24.357	0.09656	24.344	24.32	24.417	-0.012747	357	58	1.407258	0.033896923	1.4057386	286.0855	0	6.8910217						127	5	3	NaN	NaN	NaN	0.028349	1	6179	6179		61.271	5.7776	1	14194			15869	2546	9220	9410	12528	12528					0.05183249320384675
LVEYGCHGHL	10	Unmodified	_LVEYGCHGHL_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2687583904001	2	564.268758	1126.52296	2.2362	0.0012618	-1.4552	-0.00082114	0.781	0.0004407	564.2675357689948	26.288	0.096546	26.288	26.239	26.336	0	1224	94	0.883646	0.057052255	0.883646	358.26392	0	23.131165						159	5	2	NaN	NaN	NaN	0.75316	1	13955	13955		4.4131	0	1	12675			15870	1808	9221	9411	12529	12529					-0.035236715769769944
LVFCGVVI	8	Unmodified	_LVFCGVVI_					0	0	0			REV__nc|ENSG00000120907|P35348-5|ADRA1A	REV__nc|ENSG00000120907|P35348-5|ADRA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.24877472325005	2	425.248775	848.482997	1.2403	0.00052743	-9.8974	-0.0042089	-8.6571	-0.0036814	425.24475644248764	27.543	0.12067	27.543	27.519	27.639	0	1302	79	0.8357362	0.04794085	0.8357362	340.1784	0	19.513885						139	6	2	NaN	NaN	NaN	0.77734	1	5367	5367		12.26	3.1365	1	13802	+		15871	8125	9222	9412	12530	12530					0.05269433490400388
LVFCGVVI	8	Unmodified						0	0	0			REV__nc|ENSG00000120907|P35348-5|ADRA1A	REV__nc|ENSG00000120907|P35348-5|ADRA1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	425.248775	848.482997	1.2403	0.00052743	-9.8974	-0.0042089	-8.6571	-0.0036814	425.24475644248764	27.543	0.12067	27.543	27.519	27.639	0	1302	79	0.8357362	0.04794085	0.8357362	340.1784		19.513885	-0.031031	-0.00043239	-0.0010854	NaN	12.26	139	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13802	+		15872	8125	9222	9412							0.05269433490400388
LVFCGVVI	8	Unmodified						0	0	0			REV__nc|ENSG00000120907|P35348-5|ADRA1A	REV__nc|ENSG00000120907|P35348-5|ADRA1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	425.248775	848.482997	0.77541	0.00032974	-9.0985	-0.0038691	-8.3231	-0.0035394	425.2447175335607	27.615	0.096521	27.605	27.557	27.653	-0.009552	1296	70	0.8394264	0.042416096	0.83790696	341.68042		17.265076	0.031031	0.00024707	0.0010854	NaN	12.26	158	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14756	+		15873	8125	9222	9412							0.05269433490400388
LVFDNVDHT	9	Unmodified	_LVFDNVDHT_					0	0	0			REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2589135981	2	530.258914	1058.50327	1.9993	0.0010601	-2.6403	-0.0014	-0.64096	-0.00033987	530.2571150849309	21.778	0.21684	21.778	21.754	21.97	0	1287	76	0.8449601	0.04608953	0.8449601	342.84518	0	18.700958						323	10	2	NaN	NaN	NaN	0.44082	1	11016	11016		12.049	0.50025	1	84619	+		15874	12236	9223	9413	12531	12531					-0.023637243161147126
LVFDNVDHT	9	Unmodified						0	0	0			REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	REV__ENST00000453157.1_1_2:217352866-217363370:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.258914	1058.50327	1.9993	0.0010601	-2.6403	-0.0014	-0.64096	-0.00033987	530.2571150849309	21.778	0.21684	21.778	21.754	21.97	0	1287	76	0.8449601	0.04608953	0.8449601	342.84518		18.700958	-0.017046	-0.0011499	0.00075972	NaN	12.049	323	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84619	+		15875	12236	9223	9413							-0.023637243161147126
LVFFCPVHPCL	11	Unmodified	_LVFFCPVHPCL_					0	0	0			REV__ENST00000586486.1_3_19:11560227-11560374:+|nuORF	REV__ENST00000586486.1_3_19:11560227-11560374:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8248548835502	2	637.824855	1273.63516	1.4731	0.00093959	0.49968	0.00031871	1.9728	0.0012583	637.825643519267	27.542	0.09656	27.533	27.508	27.605	-0.0095501	1143	46	0.9332562	0.027519584	0.93173677	377.84897	0	11.141907						94	5	2	NaN	NaN	NaN	0.75314	1	17487	17487		3.9685	0	1	10890	+		15876	12890	9224	9414	12532	12532					0.009284661756737478
LVFGGSLC	8	Unmodified	_LVFGGSLC_					0	0	0			REV__ENST00000610164.1_1_7:112724279-112724519:-|nuORF	REV__ENST00000610164.1_1_7:112724279-112724519:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.406937281	1	795.406937	794.399661	1.6322	0.0012983	-4.287	-0.0034099	-2.6548	-0.0021117	795.4036009467209	26.795	0.1211	26.795	26.77	26.891	0	498	91	1.3232021	0.05381584	1.3232021	269.59552	0	10.964722						191	6	2	NaN	NaN	NaN	0.82332	1	4683	4683		6.0903	0	1	16937	+		15877	12986	9225	9415	12533	12533					-0.0057630295747230775
LVGEGWVGA	9	Unmodified	_LVGEGWVGA_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.23471022030003	2	444.23471	886.454868	0.87736	0.00038976	7.1522	0.0031773	8.0296	0.003567	444.2382894677657	12.582	0.19222	12.573	12.501	12.693	-0.0088415	1503	37	0.711653	0.022304714	0.71013355	289.474	0	9.072723						132	9	3	NaN	NaN	NaN	0.47587	1	5770	5770		10.605	0.85897	1	12192	+		15878	13157	9226	9416	12534	12534					0.007098268346680925
LVGGPPGL	8	Unmodified	_LVGGPPGL_					0	0	0		nc|nan|Q9NSK7-3|C19orf12;ENSG00000131943|ENST00000323670|C19orf12;nc|nan|Q9NSK7-1|C19orf12	nc|nan|Q9NSK7-3|C19orf12	nc|nan|Q9NSK7-3|C19orf12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.4243019047	1	709.424302	708.417025	1.2523	0.00088843	5.839	0.0041424	7.0914	0.0050308	709.4285055536484	35.964	0.31348	35.964	35.892	36.205	0	594	142	1.265731	0.08465004	1.265731	258.41718	0	17.282532						604	14	4	NaN	NaN	NaN	0.77734	1	3401	3401		12.26	4.6695	1	196870			15879	2734	9227	9417	12535	12535					0.051153606398429474
LVGGPPGL	8	Unmodified						0	0	0		nc|nan|Q9NSK7-3|C19orf12;ENSG00000131943|ENST00000323670|C19orf12;nc|nan|Q9NSK7-1|C19orf12	nc|nan|Q9NSK7-3|C19orf12	nc|nan|Q9NSK7-3|C19orf12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.424302	708.417025	1.1907	0.00084472	5.7485	0.0040781	6.9392	0.0049229	709.4279740538155	35.938	0.28922	35.94	35.891	36.181	0.0011024	591	127	1.26753	0.075624466	1.2660105	258.78445		15.439835	-0.012299	-2.5487E-05	0.00013975	NaN	12.26	606	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188660			15880	2734	9227	9417							0.051153606398429474
LVGIVIQL	8	Unmodified	_LVGIVIQL_					0	0	0		ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32780995-32781623:-|nuORF	ENSG00000241106|ENST00000438763|HLA-DOB	ENSG00000241106|ENST00000438763|HLA-DOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.5709661419002	1	854.570966	853.56369	1.2961	0.0011076	-0.43548	-0.00037215	0.86064	0.00073548	854.5707048407066	32.925	0.096565	32.925	32.9	32.997	0	342	76	1.4161754	0.044591665	1.4161754	288.19833	0	9.074646						132	5	3	NaN	NaN	NaN	0.30839	1	5444	5444		41.455	2.847	1	13943			15881	6069	9228	9418	12536	12536					0.13105037804950825
LVGKPKPV	8	Unmodified	_LVGKPKPV_					0	0	0			REV__ENSG00000178078|ENST00000594605|STAP2	REV__ENSG00000178078|ENST00000594605|STAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.5556504287001	1	837.55565	836.548374	-0.60514	-0.00050684	4.8619	0.0040721	4.2567	0.0035652	837.5592368763284	57.979	0.14422	57.978	57.858	58.002	-0.00051117	384	55	1.3911947	0.03214538	1.3896753	283.2059	0	6.5438538						138	7	3	NaN	NaN	NaN	0.84692	1	5103	5103		1.4396	1.0439	1	15009	+		15882	10782	9229	9419	12537	12537					0.12356171007752437
LVGMAGYYVW	10	Unmodified	_LVGMAGYYVW_					0	0	0		tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7862526518	2	579.786253	1157.55795	1.5452	0.0008959	-1.3136	-0.00076163	0.23159	0.00013427	579.7863377471133	19.779	0.14434	19.765	19.741	19.885	-0.014141	1209	64	0.892844	0.038627446	0.8913246	361.8758	0	15.655945						169	7	2	NaN	NaN	NaN	0.6337	1	14565	14565		12.588	3.6259	1	14081			15883	13772	9230	9420	12538	12538					-0.014524287690392157
LVGMAGYYVW	10	Unmodified						0	0	0		tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	579.786253	1157.55795	1.9568	0.0011345	0.15681	9.0917E-05	2.1136	0.0012255	579.7870747999073	19.78	0.19214	19.78	19.684	19.876	0	1200	67	0.89836043	0.04046464	0.89836043	364.11163		16.400574	0.0075142	0.00094074	0.0035179	NaN	12.588	187	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14308			15884	13772	9230	9420							-0.014524287690392157
LVGPEEAL	8	Unmodified	_LVGPEEAL_					0	0	0		ENST00000460475.1_1_7:100855532-100856224:-|nuORF;ENSG00000106397|ENST00000223127|PLOD3	ENST00000460475.1_1_7:100855532-100856224:-|nuORF	ENST00000460475.1_1_7:100855532-100856224:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.4509105857	1	827.450911	826.443634	2.2556	0.0018664	-1.6249	-0.0013445	0.63075	0.00052192	827.4490891983081	23.248	0.096527	23.234	23.162	23.258	-0.013294	498	40	1.3232021	0.023309112	1.3216827	269.41788	0	4.745941						64	5	2	NaN	NaN	NaN	0.81251	1	4984	4984		7.5404	2.0745	1	4001.8			15885	1599	9231	9421	12539	12539					0.023470047405112382
LVGQDGGV	8	Unmodified	_LVGQDGGV_					0	0	0		ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.3886446799002	1	744.388645	743.381368	1.4483	0.0010781	5.0865	0.0037863	6.5348	0.0048644	744.394260945497	26.529	0.21716	26.518	26.47	26.687	-0.010645	570	85	1.2801172	0.050308704	1.2785977	261.12106	0	10.262054						274	10	3	NaN	NaN	NaN	0.72013	1	3880	3880		17.799	0	1	31435			15886	4030	9232	9422	12540	12540					-0.0005872160779745172
LVGQEFEL	8	Unmodified	_LVGQEFEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4880243735	1	934.488024	933.480748	1.5637	0.0014612	-0.26687	-0.00024939	1.2968	0.0012118	934.4878420929793	27.181	0.24127	27.181	27.133	27.374	0	306	118	1.4375578	0.06950402	1.4375578	292.15244	0	14.125153						409	11	3	NaN	NaN	NaN	0.059364	1	6690	6690		75.698	11.74	1	65171			15887	594	9233	9423	12541	12541					0.011346762862785909
LVGRGGRW	8	Unmodified	_LVGRGGRW_					0	0	0			REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.7617608483	2	450.761761	899.508969	1.205	0.00054319	1.6059	0.00072386	2.8109	0.001267	450.7623903348283	57.045	0.096119	57.045	56.972	57.069	0	1305	34	0.83389086	0.020299077	0.83389086	339.12076	0	8.255096						72	5	2	NaN	NaN	NaN	0.84651	1	6061	6061		1.6704	0	1	5094.8	+		15888	12713	9234	9424	12542	12542					0.055194637768863686
LVGRGKRM	8	Unmodified	_LVGRGKRM_					0	0	0		ENST00000556125.5_1_14:69864828-69908619:+|nuORF	ENST00000556125.5_1_14:69864828-69908619:+|nuORF	ENST00000556125.5_1_14:69864828-69908619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.7790963217	2	458.779096	915.54364	1.1282	0.00051758	1.9372	0.00088875	3.0654	0.0014063	458.7788253717487	55.701	0.096409	55.701	55.677	55.773	0	1314	52	0.8283535	0.03137821	0.8283535	336.78015	0	12.757263						80	5	2	NaN	NaN	NaN	0.8439	1	6345	6345		3.1533	1.7138	1	6451.3			15889	7573	9235	9425	12543	12543					0.08248963593337066
LVGSSLGG	8	Unmodified	_LVGSSLGG_					0	0	0		nc|ENSG00000144827|Q9NUJ1-3|ABHD10;ABHD10|p.H232Tfs*2|1|0.15|ENSG00000144827|chr3:111991492-111991493|-/A|frameshift_variant;ENSG00000144827|ENST00000273359|ABHD10	nc|ENSG00000144827|Q9NUJ1-3|ABHD10	nc|ENSG00000144827|Q9NUJ1-3|ABHD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3828310205002	1	689.382831	688.375555	1.0493	0.00072337	6.4136	0.0044215	7.4629	0.0051448	689.3873859938009	28.073	0.16889	28.064	28.016	28.185	-0.0089779	660	52	1.2261056	0.03065741	1.2245861	250.46526	0	6.2625885						176	8	3	NaN	NaN	NaN	0.84692	1	2921	2921		1.4396	0	1	25421			15890	0	9236	9426	12544	12544					0.018901798805472936
LVGSSSSG	8	Unmodified	_LVGSSSSG_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3413601363002	1	693.34136	692.334084	0.92659	0.00064244	5.917	0.0041025	6.8436	0.0047449	693.3454615968338	28.845	0.19308	28.837	28.789	28.982	-0.0083504	669	97	1.2206948	0.0577482	1.2191753	249.33217	0	11.795319						293	9	3	NaN	NaN	NaN	0.84692	1	3017	3017		1.4396	0	1	40079	+		15891	10026	9237	9427	12545	12545					-0.024390008787918305
LVGSVKSS	8	Unmodified	_LVGSVKSS_					0	0	0			REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF	REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.4512449367002	1	776.451245	775.443968	1.1911	0.00092485	4.27	0.0033155	5.4611	0.0042403	776.4542732507391	32.682	0.16893	32.679	32.631	32.8	-0.0031052	531	70	1.3034686	0.04128754	1.3019491	265.68515	0	8.415588						231	8	3	NaN	NaN	NaN	0.76633	1	4361	4361		13.737	1.1492	1	33661	+		15892	8946	9238	9428	12546	12546					0.047264244603866246
LVGSVKSS	8	Unmodified						0	0	0			REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF	REV__ENST00000593174.5_1_19:13869843-13873879:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	776.451245	775.443968	1.1911	0.00092485	4.27	0.0033155	5.4611	0.0042403	776.4542732507391	32.682	0.16893	32.679	32.631	32.8	-0.0031052	531	70	1.3034686	0.04128754	1.3019491	265.68515		8.415588	-0.0020987	-0.00030538	-0.00075972	NaN	13.737	231	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33661	+		15893	8946	9238	9428							0.047264244603866246
LVHAAYLVL	9	Unmodified	_LVHAAYLVL_					0	0	0		ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.80530268469994	2	499.805303	997.596052	1.0358	0.00051768	-2.4327	-0.0012159	-1.3969	-0.00069818	499.8041998903883	26.818	0.16893	26.808	26.759	26.928	-0.010645	1272	46	0.854179	0.027647734	0.8526596	346.85742	0	11.226929						245	8	4	NaN	NaN	NaN	0.16059	1	8318	8318		27.861	4.0102	1	84015			15894	5277	9239	9429	12547	12547					0.09715825207922535
LVHGGPAA	8	Unmodified	_LVHGGPAA_					0	0	0		ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3991497866999	1	721.39915	720.391873	1.064	0.00076754	-3.9688	-0.0028631	-2.9049	-0.0020956	721.3961971528923	27.109	0.16893	27.109	27.06	27.229	0	573	64	1.2783196	0.0377537	1.2783196	260.90506	0	7.7055054						178	8	2	NaN	NaN	NaN	0.83849	1	3598	3598		4.0537	2.3833	1	18314			15895	6381	9240	9430	12548	12548					0.020493058372608175
LVHGGPAA	8	Unmodified						0	0	0		ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.39915	720.391873	1.0176	0.00073407	-5.8454	-0.0042169	-4.8279	-0.0034828	721.3949272925503	27.132	0.12066	27.122	27.074	27.194	-0.010126	570	67	1.2801172	0.03954935	1.2785977	261.27197		8.0720215	0.0066132	-0.00061548	0.00013908	NaN	4.0537	199	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17101			15896	6381	9240	9430							0.020493058372608175
LVHGGPVG	8	Unmodified	_LVHGGPVG_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.4147998509001	1	735.4148	734.407523	0.24659	0.00018135	-2.4299	-0.001787	-2.1834	-0.0016057	735.4137019512325	52.21	0.071846	52.21	52.186	52.258	-0.00031662	621	37	1.2495319	0.021609306	1.2480124	254.93863	0	4.40889						57	4	2	NaN	NaN	NaN	0.84651	1	3746	3746		1.6704	0	1	3964.6			15897	4660	9241	9431	12549	12549					0.02969592354327233
LVHGMHDKF	9	Unmodified	_LVHGMHDKF_					0	0	0		MYO9B-ABHD8|1|fusion;ENSG00000127220|ENST00000247706|ABHD8	MYO9B-ABHD8|1|fusion	MYO9B-ABHD8|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.54041107	1	1083.54041	1082.53313	1.5981	0.0017316	-0.78994	-0.00085594	0.80818	0.0008757	1083.5388341330877	26.529	0.1448	26.529	26.505	26.65	0	93	64	1.5635144	0.037124634	1.5635144	317.11365	0	7.5296326						144	7	2	NaN	NaN	NaN	0.64666	1	12093	12093		3.5698	0	1	10284			15898	7890	9242	9432	12550	12550					-0.004830638517660191
LVHIVGMPF	9	Unmodified	_LVHIVGMPF_					0	0	0		MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant;ENSG00000152034|ENST00000281806|MCHR2	MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5648349065002	1	1012.56483	1011.55756	0.88767	0.00089882	4.9697	0.0050322	5.8574	0.005931	1012.5687852018877	35.265	0.072403	35.265	35.241	35.313	0	132	85	1.5405227	0.049554467	1.5405227	312.72632	0	10.05957						100	4	2	NaN	NaN	NaN	0.58547	1	9056	9056		6.0903	1.1806	1	8898.3			15899	3761	9243	9433	12551	12551					0.052241963017877424
LVHIVGMPF	9	Unmodified						0	0	0		MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant;ENSG00000152034|ENST00000281806|MCHR2	MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.56483	1011.55756	1.3174	0.0013339	7.602	0.0076975	8.9194	0.0090314	1012.5715864145392	35.263	0.072403	35.263	35.239	35.312	-4.5776E-05	135	58	1.5387528	0.033631682	1.5372335	312.367		6.82724	-0.00072655	0.0010133	-0.0016447	NaN	6.0903	96	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8781.3			15900	3761	9243	9433							0.052241963017877424
LVHLKGRA	8	Unmodified	_LVHLKGRA_					0	0	0			REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.5679464495001	1	893.567946	892.56067	1.9759	0.0017656	-0.19837	-0.00017726	1.7776	0.0015884	893.5668530226176	55.244	0.02409	55.244	55.244	55.268	0	312	37	1.433996	0.021371007	1.433996	291.6227	0	4.3461						41	2	2	NaN	NaN	NaN	0.84876	1	5964	5964		0.39566	0	1	3570.9	+		15901	10607	9244	9434	12552	12552					0.1100920747079499
LVHLKGRA	8	Unmodified						0	0	0			REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	893.567946	892.56067	1.9759	0.0017656	-0.19837	-0.00017726	1.7776	0.0015884	893.5668530226176	55.244	0.02409	55.244	55.244	55.268	0	312	37	1.433996	0.021371007	1.433996	291.6227		4.3461	0.001402	-0.00023043	0.00075972	NaN	0.39566	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3570.9	+		15902	10607	9244	9434							0.1100920747079499
LVHLKGRA	8	Unmodified						0	0	0			REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	REV__ENST00000524852.1_1_11:6340853-6341382:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	893.567946	892.56067	0.11352	0.00010144	0.2326	0.00020785	0.34612	0.00030928	893.567799191832	55.242	0.024101	55.242	55.242	55.266	-0.00061798	312	46	1.433996	0.02671516	1.4324765	291.6227		5.4329224	-0.001402	0.00015467	-0.00075972	NaN	0.39566	47	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4251.1	+		15903	10607	9244	9434							0.1100920747079499
LVHVCATH	8	Unmodified	_LVHVCATH_					0	0	0			REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.22890494839993	2	440.228905	878.443257	0.46605	0.00020517	-0.77012	-0.00033903	-0.30407	-0.00013386	440.2287403376593	37.53	0.21675	37.53	37.458	37.675	0	1434	46	0.75435036	0.027812898	0.75435036	306.8844	0	11.314819						218	10	3	NaN	NaN	NaN	0.8439	1	5779	5779		3.1533	0	1	27620	+		15904	9953	9245	9435	12553	12553					-0.000826934603310292
LVIPRLVSPST	11	Unmodified	_LVIPRLVSPST_					0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.57992929523334	3	394.579929	1180.71796	0.64132	0.00025305	-10.394	-0.0041012	-9.7525	-0.0038482	394.57605426540243	39.742	0.1687	39.742	39.67	39.839	0	1434	61	0.75435036	0.03708583	0.75435036	458.50467	0	22.54132						327	8	4	NaN	NaN	NaN	0.77509	1	15855	15855		1.1021	0	1	75186	+		15905	10798	9246	9436	12554	12554					0.13482822499645408
LVIPRLVSPST	11	Unmodified						0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	394.579929	1180.71796	0.64132	0.00025305	-10.394	-0.0041012	-9.7525	-0.0038482	394.57605426540243	39.742	0.1687	39.742	39.67	39.839	0	1434	61	0.75435036	0.03708583	0.75435036	458.50467		22.54132	0.094636	0.00021316	0.0016868	NaN	1.1021	327	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75186	+		15906	10798	9246	9436							0.13482822499645408
LVIPRLVSPST	11	Unmodified						0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	394.579929	1180.71796	2.0955	0.00082683	-11.829	-0.0046677	-9.734	-0.0038408	394.57554754921915	39.548	0.04808	39.553	39.553	39.601	0.0053368	1437	34	0.7524962	0.020396113	0.75097674	457.3777		12.397064	-0.094636	-0.0014862	-0.0016868	NaN	1.1021	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2595.5	+		15907	10798	9246	9436							0.13482822499645408
LVISGQMT	8	Unmodified	_LVISGQMT_					0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.4546157551	1	848.454616	847.447339	2.1334	0.0018101	-3.5996	-0.0030541	-1.4662	-0.001244	848.4507719849975	26.119	0.072418	26.119	26.094	26.167	0	402	109	1.3804773	0.06437969	1.3804773	280.96576	0	13.103088						151	4	2	NaN	NaN	NaN	0.65542	1	5359	5359		21.835	1.2795	1	17013			15908	3719	9247	9437	12555	12555					0.017513512427285605
LVISGQMT	8	Unmodified						0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	848.454616	847.447339	1.6204	0.0013748	-5.0304	-0.0042681	-3.41	-0.0028933	848.4490828001731	26.143	0.14479	26.131	26.107	26.252	-0.011137	399	85	1.382264	0.050057173	1.3807446	281.32944		10.188019	0.0063795	-0.00063975	0.00013363	NaN	21.835	208	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18614			15909	3719	9247	9437							0.017513512427285605
LVIVATSY	8	Unmodified	_LVIVATSY_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.2551113114	2	433.255111	864.49567	0.89653	0.00038843	-0.12449	-5.3937E-05	0.77204	0.00033449	433.2555443688511	35.506	0.096489	35.506	35.458	35.554	0	1395	127	0.7784366	0.077863514	0.7784366	316.76172	0	31.684265						220	5	5	NaN	NaN	NaN	0.79379	1	5600	5600		10.052	0	1	236470			15910	7289	9248	9438	12556	12556					0.05800168154280527
LVLAFGFG	8	Unmodified	_LVLAFGFG_					0	0	0		ENST00000531925.5_1_19:1789538-1806275:-|nuORF;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF;ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4712520973002	1	823.471252	822.463976	1.9942	0.0016422	7.7442	0.0063771	9.7384	0.0080193	823.4770674145702	54.62	0.19256	54.62	54.5	54.692	0	420	73	1.3697531	0.042915225	1.3697531	278.91818	0	8.738678						183	9	2	NaN	NaN	NaN	0.84651	1	5053	5053		1.6704	0	1	16655			15911	2631;7457	9249	9439	12557	12557					0.045642201910027325
LVLNMDQFL	9	Unmodified	_LVLNMDQFL_					0	0	0		ENST00000401695.7_1_5:149823541-149823589:-|nuORF	ENST00000401695.7_1_5:149823541-149823589:-|nuORF	ENST00000401695.7_1_5:149823541-149823589:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5757935233	1	1092.57579	1091.56852	1.5362	0.0016784	6.4604	0.0070585	7.9966	0.0087369	1093.5893583338416	32.949	0.096546	32.949	32.925	33.021	0	69	58	1.5776473	0.033553362	1.5776473	319.94675	0	6.8046265						182	5	3	NaN	NaN	NaN	0.60736	1	12473	12473		5.1889	0.77579	1	16916			15912	6832	9250	9440	12558	12558					0.026395538854103506
LVLVIRAA	8	Unmodified	_LVLVIRAA_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.5821995302001	1	854.5822	853.574923	-0.54658	-0.0004671	4.4674	0.0038177	3.9208	0.0033506	854.5862669528121	58.962	0.07198	58.962	58.89	58.962	-0.00045395	333	52	1.4215236	0.030299783	1.4200041	289.28662	0	6.166168						126	4	3	NaN	NaN	NaN	0.84876	1	5310	5310		0.39566	0	1	12684			15913	3841	9251	9441	12559	12559					0.14227859899085615
LVLVIRAA	8	Unmodified						0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	854.5822	853.574923	1.9049	0.0016279	-0.43654	-0.00037306	1.4684	0.0012549	854.5808303670474	59.253	0.095886	59.253	59.229	59.324	0	336	64	1.419741	0.0374372	1.419741	288.9239		7.618622	0.14533	-0.0032788	-0.00013155	NaN	0.39566	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5889.1			15914	3841	9251	9441							0.14227859899085615
LVLVMLQP	8	Unmodified	_LVLVMLQP_					0	0	0		ENST00000461893.5_1_1:1720620-1721958:-|nuORF	ENST00000461893.5_1_1:1720620-1721958:-|nuORF	ENST00000461893.5_1_1:1720620-1721958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.78298168135	2	456.782982	911.55141	1.3579	0.00062028	-7.8367	-0.0035797	-6.4788	-0.0029594	456.7791132693908	18.938	0.096096	18.924	18.9	18.996	-0.014059	1383	58	0.7858409	0.035149574	0.7843215	319.51672	0	14.291534						125	5	3	NaN	NaN	NaN	0.69631	1	6145	6145		19.285	0.1664	1	13130			15915	7082	9252	9442	12560	12560					0.09209678070249083
LVLYSFALML	10	Unmodified	_LVLYSFALML_					0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.3355783578501	2	585.335578	1168.6566	1.2475	0.00073018	5.0992	0.0029848	6.3467	0.0037149	585.3386107694644	28.918	0.21719	28.909	28.837	29.054	-0.0083504	1161	70	0.9222442	0.0422377	0.92072475	373.75006	0	17.11731						264	10	2	NaN	NaN	NaN	0.29898	1	14911	14911		27.789	4.4544	1	73982			15916	13689	9253	9443	12561	12561					0.07902174476021173
LVLYSFALML	10	Unmodified						0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.335578	1168.6566	1.8764	0.0010983	4.2015	0.0024593	6.0779	0.0035576	585.338005115816	28.894	0.14479	28.894	28.846	28.991	0	1158	70	0.92408	0.0422377	0.92408	374.49405		17.11731	-0.0075153	-0.00047456	0.0016776	NaN	27.789	201	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67148			15917	13689	9253	9443							0.07902174476021173
LVMGWPCA	8	Unmodified	_LVMGWPCA_					0	0	0		ENST00000501927.2_1_5:80597250-80597328:-|nuORF	ENST00000501927.2_1_5:80597250-80597328:-|nuORF	ENST00000501927.2_1_5:80597250-80597328:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.4106424503999	1	876.410642	875.403366	0.88812	0.00077836	2.4977	0.002189	3.3858	0.0029673	876.4125633640598	33.214	0.072392	33.214	33.19	33.262	0	408	43	1.3769034	0.02502048	1.3769034	280.09546	0	5.089813						90	4	3	NaN	NaN	NaN	0.81214	1	5736	5736		7.5902	1.4999	1	7394.7			15918	7308	9254	9444	12562	12562					-0.03931956455267027
LVNPLAEITPK	11	Unmodified	_LVNPLAEITPK_					0	0	0			REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.85826350195	2	597.858264	1193.70197	0.38921	0.0002327	-5.3448	-0.0031955	-4.9556	-0.0029628	597.8545921602233	31.91	0.28956	31.906	31.834	32.123	-0.0037613	1119	124	0.9479278	0.07509875	0.94640833	384.06464	0	30.427155						577	13	2	NaN	NaN	NaN	0.76803	1	15646	15646		2.3381	0.1618	1	72520	+		15919	9308	9255	9445	12563	12563					0.11287116262747077
LVNPLAEITPK	11	Unmodified						0	0	0			REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.858264	1193.70197	0.95877	0.00057321	-5.2266	-0.0031248	-4.2678	-0.0025516	597.8548363935024	31.911	0.26548	31.911	31.863	32.128	0	1122	127	0.9460945	0.076951146	0.9460945	383.32187		31.177704	0.0024153	5.9178E-05	-0.00015691	NaN	2.3381	689	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72248	+		15920	9308	9255	9445							0.11287116262747077
LVNPLAEITPK	11	Unmodified						0	0	0			REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.858264	1193.70197	0.38921	0.0002327	-5.3448	-0.0031955	-4.9556	-0.0029628	597.8545921602233	31.91	0.28956	31.906	31.834	32.123	-0.0037613	1119	124	0.9479278	0.07509875	0.94640833	384.06464		30.427155	-0.0024153	-8.217E-05	0.00015691	NaN	2.3381	577	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72520	+		15921	9308	9255	9445							0.11287116262747077
LVPAYNHL	8	Unmodified	_LVPAYNHL_					0	0	0		ENST00000537143.5_1_11:72525490-72533952:+|nuORF;nc|ENSG00000168010|Q8NAA4-3|ATG16L2;ENST00000439504.6_1_11:72525490-72534007:+|nuORF;ENSG00000168010|ENST00000321297|ATG16L2	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.75835249209996	2	463.758352	925.502152	0.74838	0.00034707	-4.0706	-0.0018878	-3.3222	-0.0015407	463.7566516215274	12.606	0.1201	12.597	12.549	12.669	-0.0088415	1395	31	0.7784366	0.018514812	0.77691716	316.43533	0	7.5262756						74	6	2	NaN	NaN	NaN	0.8439	1	6379	6379		3.1533	0	1	5689.3			15922	4586	9256	9446	12564	12564					0.03642106105644416
LVPETWEK	8	Unmodified	_LVPETWEK_					0	0	0			REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	REV__tr|U7STZ3|U7STZ3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01040PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2687500029	2	501.26875	1000.52295	-0.31944	-0.00016013	3.6072	0.0018082	3.2878	0.0016481	501.77108772856116	52.162	0.071854	52.162	52.114	52.186	-0.00031662	1290	55	0.84311575	0.033207774	0.8415963	342.3513	0	13.484192						105	4	3	NaN	NaN	NaN	0.79607	1	8451	8451		9.746	0	1	6490.3	+		15923	13504	9257	9447	12565	12565					0.022706516946641386
LVPKVPPRR	9	Unmodified	_LVPKVPPRR_					0	0	0		ENST00000367112.1_2_6:158500311-158517393:+|nuORF;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	ENST00000367112.1_2_6:158500311-158517393:+|nuORF	ENST00000367112.1_2_6:158500311-158517393:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3507430311	2	531.350743	1060.68693	1.182	0.00062804	-6.5586	-0.0034849	-5.3766	-0.0028569	531.3474108527295	30.414	0.048283	30.407	30.383	30.431	-0.0064106	1206	49	0.894683	0.02942884	0.89316356	363.01083	0	11.940491						38	3	2	NaN	NaN	NaN	0.66196	1	10906	10906		2.4615	0.28518	1	3606.5			15924	881	9258	9448	12566	12566					0.15901713976063547
LVPQMRKV	8	Unmodified	_LVPQMRKV_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5866329811001	1	970.586633	969.579357	2.2555	0.0021891	4.0675	0.0039479	6.323	0.006137	970.5920855423757	52.14	0.071842	52.14	52.116	52.188	0	249	28	1.4713576	0.015993357	1.4713576	298.8596	0	3.2485657						39	4	2	NaN	NaN	NaN	0.84455	1	7600	7600		2.7852	1.2798	1	2140.6			15925	1379	9259	9449	12567	12567					0.09335001050339997
LVQLHHLV	8	Unmodified	_LVQLHHLV_					0	0	0			REV__ENST00000569575.5_3_16:667265-675448:+|nuORF	REV__ENST00000569575.5_3_16:667265-675448:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5832621627001	1	958.583262	957.575986	1.19	0.0011407	-1.4413	-0.0013816	-0.25124	-0.00024084	958.5830997586736	32.37	0.048294	32.37	32.321	32.37	0	207	40	1.496219	0.023072243	1.496219	303.9628	0	4.6872253						57	3	2	NaN	NaN	NaN	0.8439	1	7284	7284		3.1533	0	1	4343.4	+		15926	12816	9260	9450	12568	12568					0.0955007426798602
LVQVDSFKNK	10	Unmodified	_LVQVDSFKNK_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3324128922001	2	589.332413	1176.65027	1.2905	0.00076052	-2.7467	-0.0016187	-1.4562	-0.0008582	589.3310669263615	19.779	0.24051	19.765	19.669	19.909	-0.014141	1149	37	0.92958635	0.022021592	0.9280669	376.6957	0	8.923798						147	11	2	NaN	NaN	NaN	0.2504	1	15149	15149		31.198	5.0831	1	15992	+		15927	10485	9261	9451	12569	12569					0.06901372568859188
LVRSHSLDKL	10	Unmodified	_LVRSHSLDKL_					0	0	0			REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	REV__DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3458546184501	2	584.345855	1166.67716	2.1477	0.001255	-9.259	-0.0054104	-7.1112	-0.0041554	584.3403564952424	23.778	0.16863	23.778	23.73	23.899	0	1155	58	0.92591566	0.034873188	0.92591566	375.24545	0	14.133057						355	8	5	NaN	NaN	NaN	0.12997	1	15382	15382		41.839	3.7077	1	82456	+		15928	8309	9262	9452	12570	12570					0.10048481180024282
LVRVFKIYLT	10	Unmodified	_LVRVFKIYLT_					0	0	0		nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7823559009	1	1251.78236	1250.77508	2.0403	0.002554	4.3111	0.0053966	6.3514	0.0079506	1251.7894187305137	39.093	0.43366	39.093	39.044	39.478	0	105	133	1.5564433	0.0777725	1.5564433	315.1444	0	15.747162						1059	19	4	NaN	NaN	NaN	0.77594	1	17803	17803		1.5054	0	1	236810			15929	7996	9263	9453	12571	12571					0.15972289776027537
LVSCPPGA	8	Unmodified	_LVSCPPGA_					0	0	0			REV__nc|ENSG00000181652|Q674R7-3|ATG9B	REV__nc|ENSG00000181652|Q674R7-3|ATG9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3756371526	1	743.375637	742.368361	1.4983	0.0011138	5.2095	0.0038726	6.7078	0.0049864	743.3810200964716	34.421	0.12064	34.421	34.396	34.517	0	573	49	1.2783196	0.028766274	1.2783196	260.76083	0	5.8679504						77	6	2	NaN	NaN	NaN	0.82332	1	3950	3950		6.0903	2.0366	1	5031.3	+		15930	10847	9264	9454	12572	12572					-0.013128759915616683
LVSCPPGA	8	Unmodified						0	0	0			REV__nc|ENSG00000181652|Q674R7-3|ATG9B	REV__nc|ENSG00000181652|Q674R7-3|ATG9B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.375637	742.368361	1.4983	0.0011138	5.2095	0.0038726	6.7078	0.0049864	743.3810200964716	34.421	0.12064	34.421	34.396	34.517	0	573	49	1.2783196	0.028766274	1.2783196	260.76083		5.8679504	0.0009477	0.00094012	0.00075972	NaN	6.0903	77	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5031.3	+		15931	10847	9264	9454							-0.013128759915616683
LVSCPPGA	8	Unmodified						0	0	0			REV__nc|ENSG00000181652|Q674R7-3|ATG9B	REV__nc|ENSG00000181652|Q674R7-3|ATG9B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	743.375637	742.368361	2.0908	0.0015542	2.9281	0.0021767	5.0189	0.0037309	743.3785508880226	34.419	0.048206	34.419	34.395	34.443	-0.00064468	573	43	1.2783196	0.025165081	1.2768002	260.76083		5.133362	-0.0009477	-0.00075583	-0.00075972	NaN	6.0903	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3223.7	+		15932	10847	9264	9454							-0.013128759915616683
LVSESSDVL	9	Unmodified	_LVSESSDVL_					0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;CON__REFSEQ:XP_092267;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.488418304	1	948.488418	947.481142	1.4968	0.0014197	0.0031836	3.0196E-06	1.4999	0.0014227	948.4887103346161	21.633	0.14441	21.619	21.571	21.715	-0.013895	318	67	1.4304334	0.03919685	1.428914	290.6421	0	7.964203						219	7	3	NaN	NaN	NaN	0.023074	1	6884	6884		68.108	31.522	1	31029		+	15933	194	9265	9455	12573	12573					0.005300512154803982
LVSESSDVL	9	Unmodified						0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;CON__REFSEQ:XP_092267;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.488418	947.481142	1.7709	0.0016796	-0.71824	-0.00068124	1.0526	0.0009984	948.4874121128961	21.633	0.14459	21.633	21.585	21.73	0	318	64	1.4304334	0.037417173	1.4304334	290.6421		7.6026	0.0069691	-0.00026663	0.00075972	NaN	68.108	229	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31025		+	15934	194	9265	9455							0.005300512154803982
LVSGAHPD	8	Unmodified	_LVSGAHPD_					0	0	0		nc|ENSG00000239388|A6NK59|ASB14;ENSG00000239388|ENST00000487349|ASB14	nc|ENSG00000239388|A6NK59|ASB14	nc|ENSG00000239388|A6NK59|ASB14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3995437172	1	795.399544	794.392267	1.6233	0.0012912	3.5076	0.00279	5.1309	0.0040811	795.4021331343793	24.212	0.19307	24.199	24.151	24.344	-0.012749	537	52	1.2998781	0.030526638	1.2983587	264.8434	0	6.219635						160	9	3	NaN	NaN	NaN	0.72043	1	4595	4595		17.78	4.0433	1	14921			15935	6061	9266	9456	12574	12574					-0.013153192335266795
LVSNYPEV	8	Unmodified	_LVSNYPEV_					0	0	0			REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.73982538794996	2	460.739825	919.465098	0.24259	0.00011177	2.3674	0.0010907	2.61	0.0012025	460.74120895560685	31.235	0.12062	31.235	31.211	31.332	0	1350	43	0.80618626	0.025875807	0.80618626	327.74704	0	10.519562						142	6	3	NaN	NaN	NaN	0.78264	1	6405	6405		11.548	0	1	31505	+		15936	10787	9267	9457	12575	12575					0.002143897692349128
LVSNYPEV	8	Unmodified						0	0	0			REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	460.739825	919.465098	0.24259	0.00011177	2.3674	0.0010907	2.61	0.0012025	460.74120895560685	31.235	0.12062	31.235	31.211	31.332	0	1350	43	0.80618626	0.025875807	0.80618626	327.74704		10.519562	0.0030577	-0.00046877	-0.00016447	NaN	11.548	142	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31505	+		15937	10787	9267	9457							0.002143897692349128
LVSSGMGF	8	Unmodified	_LVSSGMGF_					0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.3862018389001	1	797.386202	796.378925	1.5245	0.0012156	-2.9066	-0.0023177	-1.3821	-0.0011021	797.3846534151411	31.887	0.26549	31.887	31.839	32.104	0	540	67	1.2980826	0.03950715	1.2980826	264.4664	0	8.049042						469	12	4	NaN	NaN	NaN	0.8439	1	4710	4710		3.1533	0.36816	1	73220			15938	7400	9268	9458	12576	12576					-0.02740893337113448
LVSSMLSAY	9	Unmodified	_LVSSMLSAY_					0	0	0		nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF	nc|ENSG00000121775|Q9GZU3-4|TMEM39B	nc|ENSG00000121775|Q9GZU3-4|TMEM39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.4913951919001	1	970.491395	969.484119	1.9562	0.0018984	-0.97949	-0.00095059	0.97668	0.00094786	970.4908656825755	22.163	0.096506	22.163	22.139	22.236	0	321	67	1.4286518	0.03919685	1.4286518	290.1857	0	7.9616394						140	5	3	NaN	NaN	NaN	0.55027	1	7583	7583		7.5404	0.67717	1	8664.6			15939	2301	9269	9459	12577	12577					-0.0018439693135405832
LVSSTYDLM	9	Oxidation (M)	_LVSSTYDLM(Oxidation (M))_		LVSSTYDLM(1)		LVSSTYDLM(50)	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.4917891223997	1	1044.49179	1043.48451	1.5443	0.001613	-0.5451	-0.00056935	0.99921	0.0010437	1044.491434780927	21.007	0.12031	21.007	20.959	21.079	0	174	49	1.5157272	0.028358936	1.5157272	307.5662	0	5.754486						97	6	2	NaN	NaN	NaN	0.042816	1	10348	10348		49.961	28.126	1	8299			15940	3609	9270	9460	12578	12578		406			-0.03549022002175661
LVSYSLVEL	9	Unmodified	_LVSYSLVEL_					0	0	0		PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5768393808002	1	1022.57684	1021.56956	1.8185	0.0018596	-1.7018	-0.0017402	0.11678	0.00011942	1022.5766198601139	31.839	0.12065	31.839	31.79	31.911	0	141	103	1.5352125	0.06023717	1.5352125	311.60727	0	12.226532						242	6	3	NaN	NaN	NaN	0.12945	1	9446	9446		31.561	2.8945	1	30378			15941	5912	9271	9461	12579	12579					0.059640915259592475
LVSYSLVEL	9	Unmodified	_LVSYSLVEL_					0	0	0		PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5768393808002	1	1022.57684	1021.56956	0.89515	0.00091536	2.4493	0.0025046	3.3444	0.0034199	1022.5806598368032	31.838	0.19304	31.833	31.785	31.978	-0.0044155	138	82	1.5369828	0.04780245	1.5354633	311.96658	0	9.702606						314	9	3	NaN	NaN	NaN	0.094712	1	9251	9251		36.586	5.7954	1	37316			15942	5912	9271	9461	12580	12580					0.059640915259592475
LVTAAGSA	8	Unmodified	_LVTAAGSA_					0	0	0		chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3;chr11:72114925-72115035|320|21.13|0.08|8.07|+|ENST00000622388|FOLR3,FOLR3;ENSG00000110203|ENST00000611028|FOLR3;nc|ENSG00000110203|P41439-4|FOLR3	chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3	chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3828310205	1	689.382831	688.375555	1.9651	0.0013547	5.4163	0.0037339	7.3814	0.0050886	689.3864820208045	28.05	0.14477	28.05	28.001	28.146	0	663	55	1.2243022	0.032462478	1.2243022	250.09686	0	6.6313477						185	7	3	NaN	NaN	NaN	0.82332	1	2996	2996		6.0903	0	1	26492			15943	120	9272	9462	12581	12581					0.018901798805245562
LVTALYML	8	Unmodified	_LVTALYML_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5270524167	1	923.527052	922.519776	1.0521	0.00097166	2.0589	0.0019014	3.111	0.0028731	923.5277187857729	32.682	0.072388	32.679	32.655	32.727	-0.0031052	261	40	1.4642475	0.023113847	1.462728	297.62793	0	4.698181						69	4	2	NaN	NaN	NaN	0.10499	1	6328	6328		63.31	24.702	1	5850.4			15944	4400	9273	9463	12582	12582					0.05541685316291023
LVTCAPAE	8	Unmodified	_LVTCAPAE_					0	0	0		ENST00000507479.5_1_4:186317255-186318313:+|nuORF;ENST00000507753.1_1_4:186317255-186318067:+|nuORF	ENST00000507479.5_1_4:186317255-186318313:+|nuORF	ENST00000507479.5_1_4:186317255-186318313:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3967665252	1	803.396767	802.38949	1.9921	0.0016004	-10.026	-0.0080547	-8.0337	-0.0064543	803.3881217009381	55.196	0.096279	55.196	55.196	55.292	0	363	55	1.4036897	0.03212142	1.4036897	285.9461	0	6.5434875						96	5	2	NaN	NaN	NaN	0.8439	1	4772	4772		3.1533	0.69183	1	8506.2			15945	7339	9274	9464	12583	12583					-0.01960910682703343
LVTDLEYAL	9	Unmodified	_LVTDLEYAL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;ENST00000367538.1_1_1:183441704-183485127:+|nuORF	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5561039386998	1	1036.5561	1035.54883	1.7005	0.0017627	-2.3462	-0.002432	-0.64574	-0.00066935	1036.5537548130776	29.57	0.1448	29.57	29.546	29.691	0	123	133	1.5458313	0.07792914	1.5458313	313.7062	0	15.814728						498	7	4	NaN	NaN	NaN	0.002833	1	10018	10018		108.51	43.96	1	95513			15946	2098	9275	9465	12584	12584					0.03247501146279319
LVTDLEYAL	9	Unmodified						0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;ENST00000367538.1_1_1:183441704-183485127:+|nuORF	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1036.5561	1035.54883	1.2092	0.0012534	-1.9737	-0.0020459	-0.76453	-0.00079248	1036.5531208358389	29.593	0.21718	29.586	29.538	29.755	-0.0070667	120	127	1.5476005	0.074386954	1.5460811	314.06522		15.095856	0.0081247	0.00021443	0.00012485	NaN	108.51	545	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101600			15947	2098	9275	9465							0.03247501146279319
LVTPGGDH	8	Unmodified	_LVTPGGDH_					0	0	0		ENST00000357867.8_1_2:216296606-216296654:-|nuORF	ENST00000357867.8_1_2:216296606-216296654:-|nuORF	ENST00000357867.8_1_2:216296606-216296654:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3995437172	1	795.399544	794.392267	1.5947	0.0012684	3.2924	0.0026188	4.8871	0.0038872	795.4019191459403	24.188	0.16895	24.188	24.164	24.333	0	540	55	1.2980826	0.03231716	1.2980826	264.47757	0	6.584442						178	8	2	NaN	NaN	NaN	0.62311	1	4682	4682		23.85	0	1	18287			15948	6582	9276	9466	12585	12585					-0.013153192335266795
LVTSINHAL	9	Unmodified	_LVTSINHAL_					0	0	0		PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant;ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.28219172915004	2	484.282192	966.549831	2.1406	0.0010366	-0.74309	-0.00035987	1.3975	0.00067678	484.28188545835434	19.394	0.072071	19.38	19.356	19.428	-0.014141	1320	40	0.824661	0.024005413	0.8231416	335.01727	0	9.752197						64	4	2	NaN	NaN	NaN	0.33629	1	7381	7381		16.584	3.9963	1	6004.2			15949	5348	9277	9467	12586	12586					0.06521760305861335
LVVDERRL	8	Unmodified	_LVVDERRL_					0	0	0			REV__ENST00000554119.5_2_14:96177182-96178754:-|nuORF	REV__ENST00000554119.5_2_14:96177182-96178754:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.30091579854997	2	500.300916	998.587279	1.3922	0.0006965	-4.9656	-0.0024843	-3.5735	-0.0017878	500.29891547694365	24.333	0.048285	24.32	24.296	24.344	-0.012749	1290	34	0.84311575	0.020290375	0.8415963	342.36032	0	8.239227						61	3	3	NaN	NaN	NaN	0.73961	1	8356	8356		16.584	1.4088	1	6713.5	+		15950	8828	9278	9468	12587	12587					0.08792851571456595
LVVFRIVLTAV	11	Unmodified	_LVVFRIVLTAV_					0	0	0		ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.7980059651	1	1229.79801	1228.79073	1.1548	0.0014202	3.1205	0.0038376	4.2754	0.0052578	1230.805117210254	41.328	0.096283	41.336	41.24	41.336	0.0082626	54	79	1.5864743	0.045907855	1.5849549	321.28784	0	9.297119						182	5	2	NaN	NaN	NaN	0.77378	1	16524	16524		1.3312	0.53129	1	42476			15951	5816	9279	9469	12588	12588					0.18548576293073893
LVVGGAFG	8	Unmodified	_LVVGGAFG_					0	0	0		tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.4086518405	1	719.408652	718.401375	1.8178	0.0013078	-0.726	-0.00052229	1.0918	0.00078547	719.407673923249	26.119	0.14483	26.119	26.07	26.215	0	510	97	1.316029	0.0574404	1.316029	268.61542	0	11.724213						240	7	3	NaN	NaN	NaN	0.81214	1	3571	3571		7.5902	3.5366	1	36539			15952	13960	9280	9470	12589	12589					0.03091074122801274
LVVGGAFG	8	Unmodified						0	0	0		tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	tr|U7T2I9|U7T2I9_FUSNUC4-dicarboxylateanaerobiccarrierOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00720PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.408652	718.401375	1.7804	0.0012808	-0.20712	-0.000149	1.5733	0.0011318	719.4082821618892	26.143	0.16891	26.131	26.083	26.252	-0.011137	510	91	1.316029	0.05383897	1.3145095	268.61542		10.989075	0.0063795	0.00023273	-0.00075972	NaN	7.5902	216	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33163			15953	13960	9280	9470							0.03091074122801274
LVVHVEPAL	9	Unmodified	_LVVHVEPAL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.79493496364995	2	488.794935	975.575317	2.102	0.0010274	-2.2283	-0.0010892	-0.12637	-6.1771E-05	488.79375861112857	22.718	0.14472	22.718	22.67	22.814	0	1302	64	0.8357362	0.038761258	0.8357362	339.4725	0	15.744659						257	7	4	NaN	NaN	NaN	0.12945	1	7777	7777		31.561	5.8093	1	84481			15954	989;7799	9281	9471	12590	12590					0.08655234828268021
LVVHVEPAL	9	Unmodified	_LVVHVEPAL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.79493496364995	2	488.794935	975.575317	1.3315	0.00065084	-1.5015	-0.00073395	-0.17002	-8.3107E-05	488.7942747533277	22.741	0.24105	22.728	22.68	22.921	-0.01354	1302	64	0.8357362	0.038761258	0.8342168	339.4725	0	15.744659						280	11	4	NaN	NaN	NaN	0.078597	1	7622	7622		38.918	17.965	1	85259			15955	989;7799	9281	9471	12591	12591					0.08655234828268021
LVVHVEPAL	9	Unmodified						0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	488.794935	975.575317	3.8806	0.0018968	-4.0121	-0.0019611	-0.13153	-6.4292E-05	488.7939423190044	23.079	0.024036	23.065	23.065	23.09	-0.013294	1302	19	0.8357362	0.01107049	0.8342168	339.47253		4.496765	0.17382	-0.001552	-0.00075972	NaN	31.561	19	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884.47			15956	989;7799	9281	9471							0.08655234828268021
LVVLLIAWWS	10	Unmodified	_LVVLLIAWWS_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.57774864826666	3	400.577749	1198.71142	0.33557	0.00013442	5.1139	0.0020485	5.4495	0.002183	400.5800198529019	39.044	0.048088	39.044	39.02	39.068	0	1428	43	0.7580582	0.025954425	0.7580582	460.67847	0	15.772766						66	3	3	NaN	NaN	NaN	0.77879	1	16439	16439		0.81135	0	1	5965	+		15957	8413	9282	9472	12592	12592					0.1200092933893302
LVVVGLTSRSE	11	Unmodified	_LVVVGLTSRSE_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.33769523535	2	580.337695	1158.66084	1.9918	0.0011559	-7.3343	-0.0042564	-5.3426	-0.0031005	580.3335572175978	24.261	0.28953	24.261	24.213	24.502	0	1146	136	0.93142134	0.08269268	0.93142134	377.50726	0	33.515503						651	13	4	NaN	NaN	NaN	0.4078	1	15108	15108		21.771	3.8014	1	455600	+		15958	10808	9283	9473	12593	12593					0.08785355223267288
LVWCWREIE	9	Unmodified	_LVWCWREIE_					0	0	0			REV__ENST00000526852.5_1_11:10879166-10879364:-|nuORF	REV__ENST00000526852.5_1_11:10879166-10879364:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3078835509001	2	617.307884	1232.60121	1.5582	0.0009619	-6.8979	-0.0042581	-5.3396	-0.0032962	617.8043735534014	25.515	0.21711	25.515	25.419	25.636	0	1146	82	0.93142134	0.04955131	0.93142134	377.24075	0	20.069092						312	10	3	NaN	NaN	NaN	0.53317	1	17337	17337		8.2448	0.65722	1	42223	+		15959	12628	9284	9474	12594	12594					-0.005782389917385444
LVWLSVAW	8	Unmodified	_LVWLSVAW_					0	0	0		nc|ENSG00000104852|P08621-4|SNRNP70;ENST00000544278.2_1_19:49607703-49611697:+|nuORF	nc|ENSG00000104852|P08621-4|SNRNP70	nc|ENSG00000104852|P08621-4|SNRNP70	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.2789207587	2	487.278921	972.543289	1.8497	0.00090132	-0.11207	-5.4611E-05	1.7376	0.0008467	487.27876385739387	27.952	0.072388	27.943	27.919	27.991	-0.009552	1332	28	0.8172735	0.016626418	0.81575406	331.9874	0	6.7538757						43	4	2	NaN	NaN	NaN	0.80071	1	7535	7535		9.1232	0.87838	1	3157.2			15960	7512	9285	9475	12595	12595					0.05591867145130891
LVYCDGHACSV	11	Unmodified	_LVYCDGHACSV_					0	0	0		MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant;ENSG00000275023|ENST00000621332|MLLT6	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.75208387095	2	583.752084	1165.48961	1.1968	0.00069861	-10.282	-0.0060023	-9.0855	-0.0053037	583.7459796727588	34.178	0.14484	34.177	34.129	34.274	-0.0012474	1257	52	0.86339295	0.031317174	0.8618735	349.91107	0	12.692047						120	7	2	NaN	NaN	NaN	0.688	1	14783	14783		8.2448	1.3816	1	16805			15961	6185	9286	9476	12596	12596					-0.08651041411212645
LVYEYTYSWL	10	Unmodified	_LVYEYTYSWL_					0	0	0		NAA25-SLC25A21|1|fusion;NAA25-SLC25A21|2|fusion;nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	NAA25-SLC25A21|1|fusion	NAA25-SLC25A21|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.22017817056667	3	446.220178	1335.63871	0.52092	0.00023245	-5.7912	-0.0025842	-5.2703	-0.0023517	446.5520533549038	41.377	0.14443	41.377	41.329	41.474	0	1563	28	0.67443806	0.016763985	0.67443806	409.3841	0	10.175781						90	7	3	NaN	NaN	NaN	0.75966	1	19341	19341		1.6985	0.17289	1	5180.2			15962	5290	9287	9477	12597	12597					-0.015688692451476527
LVYEYTYSWL	10	Unmodified	_LVYEYTYSWL_					0	0	0		NAA25-SLC25A21|1|fusion;NAA25-SLC25A21|2|fusion;nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	NAA25-SLC25A21|1|fusion	NAA25-SLC25A21|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.22017817056667	3	446.220178	1335.63871	0.86902	0.00038777	-2.6404	-0.0011782	-1.7714	-0.00079043	446.2195340037311	41.496	0.096191	41.505	41.432	41.529	0.0082588	1560	31	0.67630076	0.018627703	0.6747813	410.5147	0	11.307007						63	5	2	NaN	NaN	NaN	0.75966	1	18473	18473		1.6985	0	1	5798			15963	5290	9287	9477	12598	12598					-0.015688692451476527
LVYKLVTKLR	10	Unmodified	_LVYKLVTKLR_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1232.8089050024	1	1232.80891	1231.80163	2.2321	0.0027518	1.255	0.0015472	3.4872	0.004299	1232.8112585295169	39.67	0.19273	39.67	39.646	39.839	0	51	358	1.5882392	0.21111155	1.5882392	321.6365	0	42.752502						539	9	2	NaN	NaN	NaN	0.72631	1	17326	17326		6.2502	2.2817	1	447630	+		15964	9472	9288	9478	12599	12599					0.19499978667363393
LVYPNAHFVGT	11	Unmodified	_LVYPNAHFVGT_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.31930551695	2	609.319306	1216.62406	0.87345	0.00053221	-8.8232	-0.0053762	-7.9498	-0.0048439	609.312384824464	35.868	0.048199	35.868	35.844	35.892	0	1137	67	0.9369253	0.04038167	0.9369253	379.52512	0	16.357605						57	3	2	NaN	NaN	NaN	0.77166	1	16904	16904		1.7022	0	1	4480.4	+		15965	13123	9289	9479	12600	12600					0.024411033973592566
LVYPNAHFVGT	11	Unmodified						0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.319306	1216.62406	0.87345	0.00053221	-8.8232	-0.0053762	-7.9498	-0.0048439	609.312384824464	35.868	0.048199	35.868	35.844	35.892	0	1137	67	0.9369253	0.04038167	0.9369253	379.52512		16.357605	-0.13235	-0.002514	0.015447	NaN	1.7022	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4480.4	+		15966	13123	9289	9479							0.024411033973592566
LVYPNAHFVGT	11	Unmodified						0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.319306	1216.62406	1.2221	0.00074466	-5.2772	-0.0032155	-4.0551	-0.0024709	609.3161222073436	36.131	0.096401	36.132	36.108	36.205	0.0011024	1185	28	0.90755045	0.0165385	0.906031	367.6261		6.699341	0.13235	0.0018072	-0.015447	NaN	1.7022	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5725.8	+		15967	13123	9289	9479							0.024411033973592566
LVYWCMEYY	9	Unmodified	_LVYWCMEYY_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.8488109104334	3	423.848811	1268.5246	1.305	0.00055314	3.8514	0.0016324	5.1565	0.0021856	423.8500062363364	29.57	0.14477	29.57	29.522	29.667	0	1485	46	0.72280174	0.027864277	0.72280174	438.9781	0	16.92273						168	7	3	NaN	NaN	NaN	0.56377	1	18195	18195		6.9844	3.7728	1	21798	+		15968	8710	9290	9480	12601	12601					-0.09891798603234747
LVYWCMEYY	9	Unmodified						0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	423.848811	1268.5246	1.305	0.00055314	3.8514	0.0016324	5.1565	0.0021856	423.8500062363364	29.57	0.14477	29.57	29.522	29.667	0	1485	46	0.72280174	0.027864277	0.72280174	438.9781		16.92273	0.0039531	-0.00051038	0.00075972	NaN	6.9844	168	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21798	+		15969	8710	9290	9480							-0.09891798603234747
LWCLSKSNRCV	11	Unmodified	_LWCLSKSNRCV_					0	0	0		ENST00000470597.5_1_5:64510471-64595853:-|nuORF;nc|ENSG00000049192|Q9UKP5-2|ADAMTS6;ENSG00000049192|ENST00000381055|ADAMTS6;ENST00000381052.8_1_5:64558642-64587156:-|nuORF	ENST00000470597.5_1_5:64510471-64595853:-|nuORF	ENST00000470597.5_1_5:64510471-64595853:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.8311998592001	2	654.8312	1307.64785	1.2584	0.00082406	-1.8041	-0.0011814	-0.54568	-0.00035733	654.8293218596415	15.126	0.096118	15.126	15.101	15.198	0	1113	31	0.9515937	0.018325627	0.9515937	385.16577	0	7.41745						63	5	2	NaN	NaN	NaN	0.76975	1	18891	18891		1.3312	0.64002	1	4533.8			15970	564	9291	9481	12602	12602					0.006328775678866805
LWCVASLPS	9	Unmodified	_LWCVASLPS_					0	0	0		ENST00000367279.8_1_1:202128675-202129107:-|nuORF	ENST00000367279.8_1_1:202128675-202129107:-|nuORF	ENST00000367279.8_1_1:202128675-202129107:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.25204569370004	2	488.252046	974.489538	2.1771	0.001063	-1.9845	-0.00096895	0.19255	9.4011E-05	488.2509057108846	13.901	0.095989	13.901	13.853	13.949	0	1356	52	0.8024889	0.031422377	0.8024889	325.97263	0	12.763855						107	5	2	NaN	NaN	NaN	0.55027	1	7736	7736		7.5404	2.0745	1	13054			15971	6623	9292	9482	12603	12603					0.0012732665111343522
LWDVIIAEL	9	Unmodified	_LWDVIIAEL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.6084738602	1	1071.60847	1070.6012	1.2818	0.0013736	0.56741	0.00060804	1.8492	0.0019816	1071.6090727355506	37.362	0.21656	37.362	37.314	37.53	0	69	91	1.5776473	0.052998543	1.5776473	320.025	0	10.750732						415	10	3	NaN	NaN	NaN	0.011942	1	11599	11599		87.021	25.044	1	59662			15972	1073	9293	9483	12604	12604					0.06872084279916635
LWDVIIAEL	9	Unmodified	_LWDVIIAEL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.6084738602	1	1071.60847	1070.6012	0.98458	0.0010551	1.0932	0.0011715	2.0778	0.0022266	1071.6094418758892	37.359	0.16836	37.362	37.314	37.482	0.0028229	69	85	1.5776473	0.0494653	1.5761279	320.025	0	10.034027						368	8	3	NaN	NaN	NaN	0.019103	1	11301	11301		73.133	14.534	1	46723			15973	1073	9293	9483	12605	12605					0.06872084279916635
LWIGYQECLE	10	Unmodified	_LWIGYQECLE_					0	0	0			REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2971814788501	2	627.297181	1252.57981	0.8874	0.00055667	-0.75753	-0.00047519	0.12988	8.1472E-05	627.2968086979192	30.92	0.19311	30.915	30.771	30.964	-0.0050716	1152	79	0.92775106	0.04772383	0.9262317	375.68784	0	19.3255						266	9	4	NaN	NaN	NaN	0.65442	1	17078	17078		11.17	0.56537	1	27205	+		15974	10813	9294	9484	12606	12606					-0.0363766881112042
LWIGYQECLE	10	Unmodified						0	0	0			REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.297181	1252.57981	0.8874	0.00055667	-0.75753	-0.00047519	0.12988	8.1472E-05	627.2968086979192	30.92	0.19311	30.915	30.771	30.964	-0.0050716	1152	79	0.92775106	0.04772383	0.9262317	375.68784		19.3255	-0.027186	-0.00057241	-0.00075972	NaN	11.17	266	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27205	+		15975	10813	9294	9484							-0.0363766881112042
LWIPRLVAPSN	11	Unmodified	_LWIPRLVAPSN_					0	0	0			REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.3718724037001	2	633.371872	1264.72919	1.122	0.00071063	-6.1402	-0.003889	-5.0182	-0.0031784	633.3677340083339	32.851	0.24117	32.848	32.8	33.041	-0.0031052	1041	85	0.9955231	0.051168263	0.99400365	403.08954	0	20.71814						454	11	3	NaN	NaN	NaN	0.77883	1	17309	17309		0.44583	0.25334	1	43490	+		15976	10770	9295	9485	12607	12607					0.10741644593804267
LWIRDPSFSFW	11	Unmodified	_LWIRDPSFSFW_					0	0	0		ENST00000489615.5_1_1:174769357-174769462:+|nuORF	ENST00000489615.5_1_1:174769357-174769462:+|nuORF	ENST00000489615.5_1_1:174769357-174769462:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3667870258	2	727.366787	1452.71902	1.3271	0.00096528	-5.3858	-0.0039174	-4.0587	-0.0029522	727.3629291379355	29.425	0.33789	29.425	29.305	29.642	0	993	94	1.0247463	0.05662304	1.0247463	414.3416	0	22.894745						694	15	4	NaN	NaN	NaN	0.64343	1	20390	20390		11.17	0	1	83501			15977	7257	9296	9486	12608	12608					0.010770368685598442
LWLCLRKP	8	Unmodified	_LWLCLRKP_					0	0	0		ENST00000259983.7_2_6:10683452-10687341:-|nuORF	ENST00000259983.7_2_6:10683452-10687341:-|nuORF	ENST00000259983.7_2_6:10683452-10687341:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.8073224449001	2	514.807322	1027.60009	2.0064	0.0010329	-6.0038	-0.0030908	-3.9974	-0.0020579	514.8042258469009	53.779	0.096432	53.779	53.731	53.828	0	1302	43	0.8357362	0.025833845	0.8357362	339.23352	0	10.486206						105	5	3	NaN	NaN	NaN	0.84651	1	9691	9691		1.6704	0.2308	1	7521.2			15978	6296	9297	9487	12609	12609					0.08739591430025939
LWQLPDKPG	9	Unmodified	_LWQLPDKPG_					0	0	0			REV__ENSG00000167791|ENST00000294288|CABP2	REV__ENSG00000167791|ENST00000294288|CABP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2900167612501	2	527.290017	1052.56548	1.4137	0.00074542	-1.2071	-0.00063651	0.20655	0.00010891	527.2893922681143	27.302	0.19308	27.302	27.253	27.446	0	1182	79	0.9093879	0.047780514	0.9093879	369.01367	0	19.388489						305	9	4	NaN	NaN	NaN	0.31737	1	10751	10751		17.799	0.018654	1	57770	+		15979	10481	9298	9488	12610	12610					0.04130046822888289
LWQRSIYFQL	10	Unmodified	_LWQRSIYFQL_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3693297147502	2	677.36933	1352.72411	1.7204	0.0011653	5.1822	0.0035103	6.9026	0.0046756	677.3734584455348	25.588	0.072378	25.576	25.552	25.624	-0.0116	1071	37	0.977233	0.02195996	0.97571355	395.40564	0	8.885376						107	4	3	NaN	NaN	NaN	0.62092	1	18702	18702		13.463	0.89334	1	14232	+		15980	8628	9299	9489	12611	12611					0.06185340731190081
LWRRHCKKYW	10	Unmodified	_LWRRHCKKYW_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3956902385002	2	738.39569	1474.77683	1.8125	0.0013384	2.5956	0.0019166	4.4082	0.003255	738.3979526298277	19.49	0.072115	19.476	19.404	19.476	-0.014141	1191	37	0.90387505	0.022057295	0.9023556	365.41742	0	8.917297						93	4	3	NaN	NaN	NaN	0.78146	1	19502	19502		0.16111	0.026183	1	8198.1			15981	1763	9300	9490	12612	12612					0.058430203130001246
LWRVWQWDEKW	11	Unmodified	_LWRVWQWDEKW_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.40951750775	2	816.409518	1630.80448	1.3631	0.0011128	-10.024	-0.0081833	-8.6605	-0.0070705	816.4023359301068	33.648	0.072414	33.648	33.6	33.673	0	897	31	1.0830421	0.018186212	1.0830421	437.4613	0	7.3457336						54	4	2	NaN	NaN	NaN	0.76654	1	20782	20782		2.5994	0	1	3729			15982	1712	9301	9491	12613	12613					0.014312020542092796
LWSGPASHLQ	10	Unmodified	_LWSGPASHLQ_					0	0	0		ENST00000486442.5_1_2:23865217-23865691:+|nuORF	ENST00000486442.5_1_2:23865217-23865691:+|nuORF	ENST00000486442.5_1_2:23865217-23865691:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5581696242	1	1095.55817	1094.55089	1.4288	0.0015654	-2.2775	-0.0024951	-0.84868	-0.00092977	1095.5567833116636	39.789	0.16885	39.794	39.722	39.89	0.0053368	72	58	1.5758814	0.03355682	1.5743619	319.57776	0	6.8051147						211	8	3	NaN	NaN	NaN	0.61246	1	12279	12279		14.042	0	1	15235			15983	7239	9302	9492	12614	12614					0.00739974674752375
LWSLQFTW	8	Unmodified	_LWSLQFTW_					0	0	0		nc|ENSG00000173157|P59510-2|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7792848994501	2	540.779285	1079.54402	1.7073	0.00092328	-5.4292	-0.002936	-3.7219	-0.0020127	540.7768528797985	25.274	0.16883	25.262	25.214	25.382	-0.012011	1284	118	0.8468043	0.07185304	0.8452849	343.50745	0	29.147278						310	8	3	NaN	NaN	NaN	0.39717	1	11654	11654		36.586	9.2902	1	50637			15984	7984	9303	9493	12615	12615					0.0074266179419737455
LWVCVGYFQL	10	Unmodified	_LWVCVGYFQL_					0	0	0			REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3151772667501	2	614.315177	1226.6158	0.88655	0.00054462	3.6697	0.0022543	4.5562	0.002799	614.3175034616831	21.344	0.096191	21.344	21.32	21.416	0	1140	31	0.93509084	0.018345416	0.93509084	378.74738	0	7.430603						83	5	3	NaN	NaN	NaN	0.71736	1	17154	17154		6.8632	0.43328	1	6809.7	+		15985	11325	9304	9494	12616	12616					0.011558331563946922
LWVCVGYFQL	10	Unmodified						0	0	0			REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	614.315177	1226.6158	0.88655	0.00054462	3.6697	0.0022543	4.5562	0.002799	614.3175034616831	21.344	0.096191	21.344	21.32	21.416	0	1140	31	0.93509084	0.018345416	0.93509084	378.74738		7.430603	-0.053179	-0.00055409	0.001677	NaN	6.8632	83	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6809.7	+		15986	11325	9304	9494							0.011558331563946922
LWVCVGYFQL	10	Unmodified						0	0	0			REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	REV__ENST00000372490.3_1_9:131939407-131971282:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.315177	1226.6158	1.077	0.00066164	5.1202	0.0031454	6.1972	0.003807	614.3190184467574	21.464	0.16856	21.45	21.354	21.523	-0.014006	1143	52	0.9332562	0.031175435	0.93173677	378.00427		12.627228	0.053179	0.0012281	-0.001677	NaN	6.8632	113	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9889.8	+		15987	11325	9304	9494							0.011558331563946922
LWVLWWSVSST	11	Unmodified	_LWVLWWSVSST_					0	0	0		ENST00000427841.5_1_3:195711398-195712605:-|nuORF	ENST00000427841.5_1_3:195711398-195712605:-|nuORF	ENST00000427841.5_1_3:195711398-195712605:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.3558879885001	2	682.355888	1362.69722	1.271	0.00086727	-0.46003	-0.0003139	0.81097	0.00055337	682.3564833629081	32.875	0.14477	32.872	32.776	32.92	-0.0031052	1086	34	0.9680805	0.0201419	0.9665611	391.67343	0	8.14917						117	7	3	NaN	NaN	NaN	0.76304	1	18805	18805		3.2116	0.058268	1	8536.6			15988	6956	9305	9495	12617	12617					0.030382321199795115
LWWTLASPFRS	11	Unmodified	_LWWTLASPFRS_					0	0	0			REV__ENST00000457307.1_1_20:43994210-43995752:+|nuORF	REV__ENST00000457307.1_1_20:43994210-43995752:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3615046826501	2	682.361505	1362.70846	1.2533	0.00085522	-9.7985	-0.0066861	-8.5451	-0.0058309	682.3543250638513	32.804	0.2172	32.804	32.732	32.949	0	1092	46	0.9644182	0.027463317	0.9644182	390.19168	0	11.111298						143	10	2	NaN	NaN	NaN	0.72685	1	19721	19721		5.6942	0.96509	1	13624	+		15989	11224	9306	9496	12618	12618					0.04161054214137039
LWWTLASPFRS	11	Unmodified						0	0	0			REV__ENST00000457307.1_1_20:43994210-43995752:+|nuORF	REV__ENST00000457307.1_1_20:43994210-43995752:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	682.361505	1362.70846	1.2533	0.00085522	-9.7985	-0.0066861	-8.5451	-0.0058309	682.3543250638513	32.804	0.2172	32.804	32.732	32.949	0	1092	46	0.9644182	0.027463317	0.9644182	390.19168		11.111298	-0.034102	-0.00053964	-0.0010715	NaN	5.6942	143	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13624	+		15990	11224	9306	9496							0.04161054214137039
LWWWIRPSEM	10	Unmodified	_LWWWIRPSEM_					0	0	0			REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF	REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.3500827165999	2	702.350083	1402.68561	1.3009	0.00091367	0.17686	0.00012422	1.4777	0.0010379	702.350807144913	21.176	0.048182	21.162	21.138	21.186	-0.014004	1086	37	0.9680805	0.021971762	0.9665611	391.56128	0	8.886993						65	3	3	NaN	NaN	NaN	0.72095	1	19137	19137		5.1889	0.87873	1	4503.7	+		15991	12308	9307	9497	12619	12619					0.0003771182496166148
LWWWIRPSEM	10	Unmodified						0	0	0			REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF	REV__ENST00000467160.1_1_19:19757012-19757291:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	702.350083	1402.68561	1.3009	0.00091367	0.17686	0.00012422	1.4777	0.0010379	702.350807144913	21.176	0.048182	21.162	21.138	21.186	-0.014004	1086	37	0.9680805	0.021971762	0.9665611	391.56128		8.886993	0.0051335	-0.00067857	-0.0016752	NaN	5.1889	65	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4503.7	+		15992	12308	9307	9497							0.0003771182496166148
LWWWSWRWWKL	11	Unmodified	_LWWWSWRWWKL_					0	0	0		chr12:54282611-54283827|522|61.21|0.0|22.55|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|522|61.21|0.0|22.55|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|522|61.21|0.0|22.55|+|1|HNRNPA1,HNRNPA1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.9486128785001	2	866.948613	1731.88267	1.1875	0.0010295	-0.43389	-0.00037616	0.75359	0.00065332	866.9496698492865	24.55	0.096443	24.538	24.514	24.61	-0.012394	927	46	1.0648463	0.027310014	1.0633268	429.9001	0	11.025604						129	5	3	NaN	NaN	NaN	0.78061	1	19817	19817		0.13493	0.13493	1	11698			15993	125	9308	9498	12620	12620					0.04600679430109267
LYAAMLAG	8	Unmodified	_LYAAMLAG_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.4225873452	1	809.422587	808.415311	1.5259	0.0012351	-5.9467	-0.0048134	-4.4208	-0.0035783	809.4187818091094	28.001	0.072407	27.992	27.968	28.04	-0.0089798	453	64	1.3500742	0.037604928	1.3485547	274.98956	0	7.659546						89	4	2	NaN	NaN	NaN	0.83849	1	4777	4777		4.0537	0	1	7094	+		15994	10173	9309	9499	12621	12621					0.0034398355958273896
LYAAQAHL	8	Unmodified	_LYAAQAHL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4781283891999	1	886.478128	885.470852	1.1842	0.0010498	-4.2626	-0.0037787	-3.0784	-0.0027289	886.4742645022931	35.458	0.048206	35.458	35.434	35.482	0	375	79	1.3965509	0.046368003	1.3965509	284.0423	0	9.430695						71	3	2	NaN	NaN	NaN	0.8439	1	5878	5878		3.1533	0	1	4193			15995	2793	9310	9500	12622	12622					0.023535330715503733
LYAARQYFVQW	11	Unmodified	_LYAARQYFVQW_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;ENST00000465985.1_1_20:35526176-35532601:-|nuORF	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.87223654445	2	722.872237	1443.72992	1.7916	0.0012951	-5.6537	-0.0040869	-3.8621	-0.0027918	722.8665583906892	26.119	0.16894	26.119	26.07	26.239	0	1032	64	1.0010062	0.03838235	1.0010062	404.76645	0	15.520294						190	8	3	NaN	NaN	NaN	0.022256	1	20345	20345		60.984	44.399	1	18718			15996	1317	9311	9501	12623	12623					0.025804392428199208
LYAARQYFVQW	11	Unmodified	_LYAARQYFVQW_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;ENST00000465985.1_1_20:35526176-35532601:-|nuORF	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.87223654445	2	722.872237	1443.72992	1.8302	0.001323	-3.1346	-0.0022659	-1.3044	-0.00094292	722.8682882509755	26.167	0.096525	26.156	26.107	26.204	-0.011135	1020	55	1.0083145	0.03289026	1.006795	407.72156	0	13.2994995						135	5	3	NaN	NaN	NaN	0.11611	1	19377	19377		38.131	27.771	1	13490			15997	1317	9311	9501	12624	12624					0.025804392428199208
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2849313833501	2	549.284931	1096.55531	1.745	0.00095853	-3.2266	-0.0017723	-1.4816	-0.00081381	549.2840127563314	19.564	0.26408	19.564	19.492	19.756	0	1263	85	0.85970795	0.051567256	0.85970795	348.67368	0	20.914246						505	12	4	NaN	NaN	NaN	1.0552E-05	1	12698	12698		117.07	55.795	1	133880			15998	5206	9312	9502	12625	12625					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	ENST00000485612.5_1_X:153061851-153063885:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2849313833501	2	549.284931	1096.55531	1.6667	0.00091549	-3.4725	-0.0019074	-1.8058	-0.00099189	549.784091273436	19.563	0.19265	19.549	19.476	19.669	-0.014141	1266	91	0.85786515	0.055256605	0.8563457	347.92627	0	22.410553						498	9	5	NaN	NaN	NaN	0.00037805	1	12366	12366		92.758	48.119	1	124160			15999	5206	9312	9502	12626	12626					0.010894390976773138
LYAEIEKES	9	Unmodified	_LYAEIEKES_					0	0	0			REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	REV__tr|U7T5W4|U7T5W4_FUSNUVRR-NUCdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00109PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2742293113	2	541.274229	1080.53391	1.1698	0.00063319	-7.0111	-0.0037949	-5.8413	-0.0031617	541.7723675391901	21.2	0.31297	21.186	20.945	21.258	-0.014004	1257	73	0.86339295	0.044219613	0.8618735	350.23264	0	17.93753						323	14	3	NaN	NaN	NaN	0.18779	1	11685	11685		26.115	2.2645	1	35317	+		16000	13621	9313	9503	12627	12627					-0.0031399072172462184
LYAEVIGVL	9	Unmodified	_LYAEVIGVL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;FRYL|p.R230Efs*2|1|0.32|ENSG00000075539|chr4:48606492-48606492|A/-|frameshift_variant;ENSG00000075539|ENST00000358350|FRYL	ENSG00000073910|ENST00000542859|FRY;ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5713600724001	1	976.57136	975.564084	1.1332	0.0011067	0.051303	5.0101E-05	1.1845	0.0011568	976.5715065068199	31.428	0.1448	31.428	31.404	31.549	0	201	70	1.4997677	0.040798426	1.4997677	304.60403	0	8.286163						258	7	3	NaN	NaN	NaN	0.032417	1	7775	7775		55.947	3.1891	1	50394			16001	817;838	9314	9504	12628	12628					0.075324127341446
LYAFFLFA	8	Unmodified	_LYAFFLFA_					0	0	0			REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	331.18110663646667	3	331.181107	990.521491	1.6563	0.00054855	5.4811	0.0018152	7.1374	0.0023638	331.1830801845916	15.15	0.048054	15.15	15.126	15.174	0	1518	37	0.7023569	0.022316813	0.7023569	427.8458	0	13.594452						61	3	2	NaN	NaN	NaN	0.81214	1	8238	8238		8.2903	3.9801	1	6976.5	+		16002	12978	9315	9505	12629	12629					0.025850623965538944
LYAKVYFFKGC	11	Unmodified	_LYAKVYFFKGC_					0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.84938422485	2	669.849384	1337.68422	1.992	0.0013343	-5.1308	-0.0034369	-3.1388	-0.0021025	669.8440931436838	14.117	0.047942	14.106	14.082	14.13	-0.010672	1122	31	0.9460945	0.018333495	0.9445751	382.85004	0	7.418915						44	3	2	NaN	NaN	NaN	0.7072	1	18506	18506		6.9844	2.6742	1	3573.4	+		16003	10725	9316	9506	12630	12630					0.028880777362473964
LYAKVYFFKGC	11	Unmodified						0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	669.849384	1337.68422	1.8597	0.0012457	-5.3856	-0.0036076	-3.526	-0.0023619	669.845141718628	14.117	0.072053	14.117	14.093	14.165	0	1122	28	0.9460945	0.01650107	0.9460945	382.85004		6.677368	0.0054418	-0.00014176	0.00075972	NaN	6.9844	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3769.1	+		16004	10725	9316	9506							0.028880777362473964
LYAKVYFFKGC	11	Unmodified						0	0	0			REV__nc|ENSG00000175395|P17030-2|ZNF25	REV__nc|ENSG00000175395|P17030-2|ZNF25	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	669.849384	1337.68422	1.992	0.0013343	-5.1308	-0.0034369	-3.1388	-0.0021025	669.8440931436838	14.117	0.047942	14.106	14.082	14.13	-0.010672	1122	31	0.9460945	0.018333495	0.9445751	382.85004		7.418915	-0.0054418	0.00019967	-0.00075972	NaN	6.9844	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3573.4	+		16005	10725	9316	9506							0.028880777362473964
LYAMTQDKVF	10	Unmodified	_LYAMTQDKVF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3075491999	2	608.307549	1214.60055	0.64277	0.000391	7.2882	0.0044335	7.931	0.0048245	608.3113352943453	27.856	0.12071	27.846	27.822	27.943	-0.009552	1167	100	0.91857195	0.060556173	0.9170525	372.09753	0	24.530273						325	6	4	NaN	NaN	NaN	0.70677	1	16178	16178		7.5876	0.047225	1	43847			16006	5642	9317	9507	12631	12631					0.0018292156853476627
LYANMFERL	9	Unmodified	_LYANMFERL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7946090001501	2	578.794609	1155.57467	2.573	0.0014892	-0.79014	-0.00045733	1.7828	0.0010319	578.7938108200608	25.684	0.28956	25.684	25.636	25.926	0	1176	88	0.9130621	0.053302348	0.9130621	370.0778	0	21.604248						451	13	2	NaN	NaN	NaN	0.00065562	1	15013	15013		115.07	59.576	1	307060			16007	305	9318	9508	12632	12632					0.003100721169175813
LYANMFERL	9	Unmodified	_LYANMFERL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7946090001501	2	578.794609	1155.57467	2.4695	0.0014294	-0.69498	-0.00040225	1.7745	0.0010271	578.7939984346779	25.708	0.28959	25.696	25.648	25.938	-0.0116	1176	85	0.9130621	0.051461518	0.91154265	370.0778	0	20.858124						481	13	2	NaN	NaN	NaN	0.011693	1	14511	14511		87.778	40.642	1	316100			16008	305	9318	9508	12633	12633					0.003100721169175813
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(72)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.7920663112001	2	586.792066	1171.56958	2.1708	0.0012738	-2.1334	-0.0012519	0.037417	2.1956E-05	586.790937140821	21.802	0.072201	21.802	21.778	21.85	0	1185	58	0.90755045	0.034918368	0.90755045	367.7846	0	14.150665						223	4	4	NaN	NaN	NaN	0.019939	1	15540	15540		72.076	26.911	1	134400			16009	305	9318	9509	12634	12634		27			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(81)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.7920663112001	2	586.792066	1171.56958	1.5275	0.00089632	-1.4647	-0.00085949	0.062761	3.6828E-05	586.7911362160921	21.826	0.16849	21.812	21.667	21.836	-0.013895	1185	73	0.90755045	0.04410982	0.906031	367.7846	0	17.875519						271	8	4	NaN	NaN	NaN	0.013959	1	14995	14995		80.901	30.94	1	136540			16010	305	9318	9509	12635	12635		27			-0.009342317456912497
LYANMFERL	9	Oxidation (M)						0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	586.792066	1171.56958	2.3286	0.0013664	-2.4557	-0.001441	-0.12713	-7.4601E-05	586.7908768345419	21.922	0.14456	21.922	21.898	22.043	0	1188	88	0.90571284	0.053302348	0.90571284	367.03992		21.600739	0.05522	-0.0006118	-0.00015909	NaN	80.901	497	7	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296040			16011	305	9318	9509				27			-0.009342317456912497
LYAPTILLW	9	Unmodified	_LYAPTILLW_					0	0	0		ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.6342946802001	1	1089.63429	1088.62702	1.8032	0.0019648	1.0861	0.0011834	2.8893	0.0031482	1089.6352264217262	36.832	0.1203	36.832	36.784	36.904	0	60	55	1.582944	0.03178227	1.582944	321.03177	0	6.445648						178	6	3	NaN	NaN	NaN	0.02781	1	12351	12351		61.977	0	1	21267			16012	915	9319	9510	12636	12636					0.08624978522198035
LYARFTAQI	9	Unmodified	_LYARFTAQI_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.803291312	2	541.803291	1081.59203	1.6986	0.00092029	-3.2515	-0.0017617	-1.553	-0.0008414	541.8012951986232	22.26	0.096487	22.26	22.236	22.332	0	1227	46	0.88180584	0.027602911	0.88180584	357.69733	0	11.196899						135	5	3	NaN	NaN	NaN	0.054111	1	12062	12062		45.165	6.557	1	24401			16013	2839	9320	9511	12637	12637					0.054497357142281544
LYARFTAQI	9	Unmodified	_LYARFTAQI_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.803291312	2	541.803291	1081.59203	1.1624	0.00062978	-1.1559	-0.00062624	0.0065232	3.5343E-06	541.80277632205	22.284	0.12046	22.27	22.246	22.366	-0.013731	1230	49	0.8799654	0.029447913	0.878446	356.95078	0	11.945282						166	6	3	NaN	NaN	NaN	0.19268	1	11750	11750		25.801	5.2455	1	22765			16014	2839	9320	9511	12638	12638					0.054497357142281544
LYARLFDFL	9	Unmodified	_LYARLFDFL_					0	0	0		ENST00000595191.1_1_19:8614980-8615536:-|nuORF;ENST00000600825.1_1_19:8612859-8615196:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	ENST00000595191.1_1_19:8614980-8615536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3213168896501	2	579.321317	1156.62808	1.1272	0.000653	-0.75616	-0.00043806	0.37103	0.00021494	579.3209430045374	32.851	0.072369	32.848	32.8	32.872	-0.0031052	1179	37	0.9112251	0.02204299	0.90970564	369.32925	0	8.934296						67	4	2	NaN	NaN	NaN	0.059222	1	14543	14543		42.995	8.556	1	11574			16015	3370	9321	9512	12639	12639					0.05603192891089748
LYCFVTLCDGH	11	Unmodified	_LYCFVTLCDGH_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.19134815510006	3	424.191348	1269.55222	1.2993	0.00055114	-3.2631	-0.0013842	-1.9638	-0.00083303	424.1904417161775	24.791	0.072409	24.791	24.767	24.84	0	1440	43	0.7506418	0.025960147	0.7506418	455.8822	0	15.766174						95	4	3	NaN	NaN	NaN	0.76304	1	18222	18222		1.1021	0	1	9576.1			16016	2691	9322	9513	12640	12640					-0.0717789534298845
LYCQSTAA	8	Unmodified	_LYCQSTAA_					0	0	0		ENST00000487078.5_1_2:27280298-27281376:+|nuORF	ENST00000487078.5_1_2:27280298-27281376:+|nuORF	ENST00000487078.5_1_2:27280298-27281376:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.3869301204	1	856.38693	855.379654	0.7553	0.00064683	3.931	0.0033665	4.6863	0.0040133	856.3904624284677	31.307	0.21717	31.302	31.253	31.47	-0.0050716	423	55	1.3679651	0.03218651	1.3664457	278.37793	0	6.5498657						307	10	3	NaN	NaN	NaN	0.79379	1	5329	5329		10.052	0.92837	1	37983			16017	7241	9323	9514	12641	12641					-0.05382098688073711
LYDAELSQM	9	Unmodified	_LYDAELSQM_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.4870380954999	1	1069.48704	1068.47976	1.5897	0.0017001	1.1661	0.0012471	2.7558	0.0029473	1069.487678147175	24.14	0.0966	24.14	24.116	24.213	0	141	64	1.5352125	0.037187576	1.5352125	311.425	0	7.5436707						161	5	3	NaN	NaN	NaN	0.022082	1	11478	11478		69.363	32.777	1	14964		+	16018	189;197	9324	9515	12642	12642					-0.05173906144932516
LYDAELSQM	9	Unmodified	_LYDAELSQM_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.4870380954999	1	1069.48704	1068.47976	1.2221	0.001307	0.78357	0.00083801	2.0056	0.002145	1069.4893515110114	24.164	0.072329	24.151	24.127	24.199	-0.012749	144	67	1.533442	0.038960457	1.5319226	311.06586	0	7.90329						145	4	3	NaN	NaN	NaN	0.0042638	1	11201	11201		104.2	64.045	1	13858		+	16019	189;197	9324	9515	12643	12643					-0.05173906144932516
LYDDYEYI	8	Unmodified	_LYDDYEYI_					0	0	0		ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	ENSG00000124429|ENST00000262753|POF1B	ENSG00000124429|ENST00000262753|POF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2398551777	2	547.239855	1092.46516	1.1045	0.00060444	-8.3116	-0.0045484	-7.2071	-0.003944	547.2350154441323	30.8	0.14483	30.794	30.77	30.915	-0.0057545	1263	82	0.85970795	0.049776614	0.8581885	348.68988	0	20.188965						192	7	3	NaN	NaN	NaN	0.69631	1	12173	12173		19.285	0	1	21848			16020	2415	9325	9516	12644	12644					-0.07737655021446699
LYDEAIRHF	9	Unmodified	_LYDEAIRHF_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.53297910263336	3	388.532979	1162.57711	1.7271	0.00067105	-1.6659	-0.00064727	0.061203	2.3779E-05	388.86720219660197	19.012	0.047964	19.012	18.988	19.036	0	1455	31	0.7413668	0.018552959	0.7413668	450.6941	0	11.278809						45	3	3	NaN	NaN	NaN	0.41766	1	15234	15234		8.2775	3.2607	1	3792.5			16021	3444	9326	9517	12645	12645					0.002322438462442733
LYDEAIRHF	9	Unmodified						0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	388.532979	1162.57711	2.1177	0.00082278	-1.9403	-0.00075387	0.17735	6.8907E-05	388.8667047263412	19.058	0.04805	19.044	19.044	19.092	-0.014059	1458	37	0.7395112	0.022263587	0.73799175	449.56604		13.534546	0.015744	-0.00015902	-0.0016875	NaN	8.2775	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3863.9			16022	3444	9326	9517							0.002322438462442733
LYDFIHTSF	9	Unmodified	_LYDFIHTSF_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7794818647	2	571.779482	1141.54441	1.548	0.00088512	-0.017817	-1.0187E-05	1.5302	0.00087493	571.7790181937622	27.567	0.12067	27.567	27.543	27.664	0	1176	58	0.9130621	0.034910858	0.9130621	370.13144	0	14.151947						199	6	4	NaN	NaN	NaN	0.028349	1	14516	14516		61.271	37.937	1	26744			16023	4998	9327	9518	12646	12646					-0.02069963276630915
LYDFIHTSF	9	Unmodified	_LYDFIHTSF_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7794818647	2	571.779482	1141.54441	0.80192	0.00045852	-0.74693	-0.00042708	0.054993	3.1444E-05	571.7783760045571	27.59	0.096521	27.581	27.557	27.653	-0.009552	1176	49	0.9130621	0.029390633	0.91154265	370.13144	0	11.914215						156	5	4	NaN	NaN	NaN	0.055351	1	14040	14040		44.638	22.867	1	25946			16024	4998	9327	9518	12647	12647					-0.02069963276630915
LYDHCSANNY	10	Unmodified	_LYDHCSANNY_					0	0	0		nc|ENSG00000107890|Q9UPS8-2|ANKRD26	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.2429375704	2	600.242938	1198.47132	0.7337	0.0004404	-2.2804	-0.0013688	-1.5467	-0.00092842	600.2418590437576	30.534	0.12063	30.529	30.505	30.625	-0.0057545	1218	43	0.8873258	0.025755763	0.8858064	359.49463	0	10.434784						150	6	4	NaN	NaN	NaN	0.73444	1	15761	15761		5.6942	0	1	10732			16025	7921	9328	9519	12648	12648					-0.11997460061547827
LYDHTTILF	9	Unmodified	_LYDHTTILF_					0	0	0		ENST00000561993.5_1_16:8732964-8736423:+|nuORF;ENST00000565866.5_1_16:8735295-8739997:+|nuORF;nc|ENSG00000067365|Q9BUU2-3|METTL22;ENSG00000067365|ENST00000381920|METTL22	ENST00000561993.5_1_16:8732964-8736423:+|nuORF	ENST00000561993.5_1_16:8732964-8736423:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7951319289	2	561.795132	1121.57571	1.678	0.0009427	-5.607	-0.00315	-3.929	-0.0022073	561.7921496868389	26.263	0.096468	26.252	26.228	26.324	-0.011137	1188	91	0.90571284	0.055143297	0.9041934	367.23026	0	22.358398						157	5	3	NaN	NaN	NaN	0.14301	1	13338	13338		29.598	6.4807	1	22673			16026	716	9329	9520	12649	12649					0.01978609757452432
LYDHTTILF	9	Unmodified						0	0	0		ENST00000561993.5_1_16:8732964-8736423:+|nuORF;ENST00000565866.5_1_16:8735295-8739997:+|nuORF;nc|ENSG00000067365|Q9BUU2-3|METTL22;ENSG00000067365|ENST00000381920|METTL22	ENST00000561993.5_1_16:8732964-8736423:+|nuORF	ENST00000561993.5_1_16:8732964-8736423:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.795132	1121.57571	2.142	0.0012034	-5.9703	-0.0033541	-3.8283	-0.0021507	561.7912310668831	26.263	0.096531	26.263	26.215	26.312	0	1191	79	0.90387505	0.047801137	0.90387505	366.4851		19.38147	0.0056729	-0.00019645	-0.00015919	NaN	29.598	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22867			16027	716	9329	9520							0.01978609757452432
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.8289747462501	2	569.828975	1137.6434	2.0568	0.001172	-0.8757	-0.000499	1.1811	0.00067301	569.8290349164021	28.894	0.24138	28.894	28.822	29.063	0	1182	58	0.9093879	0.034910858	0.9093879	368.65707	0	14.152527						453	11	5	NaN	NaN	NaN	6.1965E-18	1	14379	14379		158.26	40.054	1	392990			16028	1084	9330	9521	12650	12650					0.08008059688290814
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.8289747462501	2	569.828975	1137.6434	1.4588	0.00083125	-0.81891	-0.00046664	0.63986	0.00036461	569.8284685073324	28.894	0.2896	28.885	28.837	29.127	-0.0083485	1182	61	0.9093879	0.036746264	0.90786844	368.65707	0	14.896576						562	13	6	NaN	NaN	NaN	5.7913E-18	1	13909	13909		158.81	38.949	1	408920			16029	1084	9330	9521	12651	12651					0.08008059688290814
LYDIVFKHF	9	Unmodified	_LYDIVFKHF_					0	0	0		nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497-7|SP100	nc|ENSG00000067066|P23497-7|SP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.5499700819667	3	394.54997	1180.62808	1.1468	0.00045248	-2.2899	-0.00090347	-1.143	-0.00045099	394.5493057556385	24.719	0.14478	24.719	24.695	24.84	0	1404	40	0.77288127	0.024075806	0.77288127	469.76837	0	14.633575						141	7	3	NaN	NaN	NaN	0.33629	1	15850	15850		10.965	8.8625	1	25263			16030	712	9331	9522	12652	12652					0.04499192891103121
LYDIVFKHF	9	Unmodified	_LYDIVFKHF_					0	0	0		nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497-7|SP100	nc|ENSG00000067066|P23497-7|SP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.5499700819667	3	394.54997	1180.62808	1.1863	0.00046804	-1.8577	-0.00073296	-0.67146	-0.00026492	394.54914924261027	24.767	0.193	24.755	24.707	24.9	-0.012392	1404	37	0.77288127	0.022225022	0.7713618	469.76837	0	13.508667						175	9	4	NaN	NaN	NaN	0.25448	1	15266	15266		14.854	0	1	23795			16031	712	9331	9522	12653	12653					0.04499192891103121
LYDLLHSPW	9	Unmodified	_LYDLLHSPW_					0	0	0		nc|ENSG00000082126|Q96JB8-3|MPP4;ENST00000486212.6_1_2:202531091-202563346:-|nuORF;ENST00000483841.2_1_2:202545559-202558746:-|nuORF;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2952991044001	2	572.295299	1142.57605	0.82497	0.00047213	-0.12352	-7.0689E-05	0.70145	0.00040144	572.295352752642	27.735	0.072386	27.726	27.677	27.75	-0.009552	1179	61	0.9112251	0.036758184	0.90970564	369.38278	0	14.900635						153	4	3	NaN	NaN	NaN	0.49672	1	14069	14069		9.746	0.8269	1	14247			16032	931	9332	9523	12654	12654					0.010460294773338319
LYDLLHSPW	9	Unmodified						0	0	0		nc|ENSG00000082126|Q96JB8-3|MPP4;ENST00000486212.6_1_2:202531091-202563346:-|nuORF;ENST00000483841.2_1_2:202545559-202558746:-|nuORF;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	nc|ENSG00000082126|Q96JB8-3|MPP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.295299	1142.57605	1.566	0.00089624	2.619	0.0014989	4.1851	0.0023951	572.2972254033855	27.712	0.12066	27.712	27.615	27.736	0	1182	61	0.9093879	0.03675419	0.9093879	368.638		14.899017	-0.006893	0.0015036	-0.00015889	NaN	9.746	135	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10710			16033	931	9332	9523							0.010460294773338319
LYDLLLIN	8	Unmodified	_LYDLLLIN_					0	0	0			REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5713600724002	1	976.57136	975.564084	1.3832	0.0013508	0.44227	0.00043191	1.8255	0.0017827	976.5727664546074	35.36	0.072289	35.361	35.336	35.409	0.00053024	138	43	1.5369828	0.024779797	1.5354633	312.16245	0	5.0328064						66	4	2	NaN	NaN	NaN	0.65075	1	7619	7619		22.126	0	1	5927.7	+		16034	13488	9333	9524	12655	12655					0.07532412734155969
LYDPINPDRE	10	Unmodified	_LYDPINPDRE_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3013097290501	2	616.30131	1230.58807	0.60928	0.0003755	-5.9776	-0.003684	-5.3683	-0.0033085	616.7991414826621	30.776	0.14473	30.77	30.698	30.842	-0.0057545	1137	103	0.9369253	0.06240809	0.93540585	379.4768	0	25.276733						391	7	4	NaN	NaN	NaN	0.60686	1	16556	16556		14.425	0.96197	1	29583			16035	4100	9334	9525	12656	12656					-0.01800398570139805
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.3078751634	2	524.307875	1046.6012	1.2694	0.00066557	-3.484	-0.0018267	-2.2146	-0.0011611	524.3058638907822	24.55	0.21704	24.55	24.478	24.695	0	1239	70	0.87444305	0.04236108	0.87444305	354.8598	0	17.190674						258	10	5	NaN	NaN	NaN	0.050761	1	10500	10500		46.588	15.978	1	77939			16036	5520	9335	9526	12657	12657					0.07976084279880524
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.3078751634	2	524.307875	1046.6012	1.2653	0.00066343	-1.3169	-0.00069045	-0.051529	-2.7017E-05	524.3070809518218	24.55	0.16888	24.538	24.489	24.658	-0.012394	1239	49	0.87444305	0.02945745	0.8729236	354.85977	0	11.954193						226	8	4	NaN	NaN	NaN	0.028404	1	10291	10291		61.199	27.773	1	71633			16037	5520	9335	9526	12658	12658					0.07976084279880524
LYDPYRNWRHR	11	Unmodified	_LYDPYRNWRHR_					0	0	0		ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4000154539499	2	788.400015	1574.78548	1.209	0.00095315	8.3387	0.0065742	9.5476	0.0075274	788.4066241864749	33.068	0.096359	33.066	33.018	33.114	-0.0024796	930	37	1.0630256	0.021849155	1.0615062	429.5048	0	8.827911						140	5	3	NaN	NaN	NaN	0.65577	1	19712	19712		10.36	1.3982	1	13338			16038	3474	9336	9527	12659	12659					0.021076654831404085
LYDPYRNWRHR	11	Unmodified						0	0	0		ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	788.400015	1574.78548	1.2402	0.00097775	9.9839	0.0078713	11.224	0.0088491	788.4095516219954	33.045	0.096561	33.045	32.997	33.094	0	930	46	1.0630256	0.027312875	1.0630256	429.5048		11.035522	-0.01018	0.0010437	0.00075972	NaN	10.36	176	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17529			16039	3474	9336	9527							0.021076654831404085
LYDSVILL	8	Unmodified	_LYDSVILL_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.5448109709001	1	935.544811	934.537535	1.2638	0.0011824	1.5758	0.0014742	2.8396	0.0026566	935.5475168203053	32.634	0.096539	32.631	32.607	32.703	-0.0031052	228	73	1.4837929	0.042624116	1.4822735	301.54376	0	8.6622925						190	5	3	NaN	NaN	NaN	0.27293	1	6579	6579		44.247	2.7868	1	23417			16040	5945	9337	9528	12660	12660					0.06764723842809417
LYDTHITVL	9	Unmodified	_LYDTHITVL_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7951319289	2	537.795132	1073.57571	1.6674	0.00089671	-2.6476	-0.0014239	-0.98021	-0.00052715	537.7938714701208	23.995	0.12063	23.995	23.923	24.044	0	1242	61	0.87260187	0.036833763	0.87260187	353.99707	0	14.9427185						150	6	4	NaN	NaN	NaN	0.23112	1	11723	11723		23.334	0.21685	1	18590			16041	1371	9338	9529	12661	12661					0.04186609757448423
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.2796490402	2	594.279649	1186.54475	0.8533	0.0005071	-5.0375	-0.0029937	-4.1842	-0.0024866	594.7757636387455	27.711	0.16889	27.702	27.653	27.822	-0.009552	1167	97	0.91857195	0.05880046	0.9170525	372.1964	0	23.825378						406	8	3	NaN	NaN	NaN	0.21199	1	15436	15436		24.562	2.727	1	96663			16042	639	9339	9530	12662	12662					-0.041065435567816166
LYEKLSEKHS	10	Unmodified	_LYEKLSEKHS_					0	0	0		ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;nc|ENSG00000028528|Q13596-2|SNX1;ENST00000560260.5_1_15:64404820-64422215:+|nuORF	ENSG00000028528|ENST00000559844|SNX1	ENSG00000028528|ENST00000559844|SNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.88731049840004	3	411.88731	1232.6401	1.936	0.00079742	3.9028	0.0016075	5.8388	0.0024049	411.88883305834065	18.772	0.072008	18.772	18.748	18.82	0	1398	34	0.77658504	0.02036959	0.77658504	471.7898	0	12.374908						63	4	2	NaN	NaN	NaN	0.68669	1	17351	17351		4.6175	1.0229	1	5531.6			16043	486	9340	9531	12663	12663					0.033087648436321615
LYELDGRKPF	10	Unmodified	_LYELDGRKPF_					0	0	0		ENSG00000118939|ENST00000377595|UCHL3	ENSG00000118939|ENST00000377595|UCHL3	ENSG00000118939|ENST00000377595|UCHL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.22403408366665	3	413.224034	1236.65027	2.1003	0.00086792	-8.2784	-0.0034208	-6.1781	-0.0025529	413.2205197215202	16.059	0.047894	16.047	15.999	16.047	-0.012611	1458	64	0.7395112	0.038980305	0.73799175	449.25073	0	23.68042						85	3	2	NaN	NaN	NaN	0.72095	1	16723	16723		6.6174	3.4058	1	6746.4			16044	2196	9341	9532	12664	12664					0.04141372568847146
LYEMILQR	8	Unmodified	_LYEMILQR_					0	0	0		nc|ENSG00000124019|Q9H5Z6-2|FAM124B;ENSG00000124019|ENST00000409685|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2917021704501	2	533.291702	1064.56885	1.9832	0.0010576	-0.9789	-0.00052204	1.0043	0.00053558	533.2911088805365	54.5	0.048096	54.5	54.476	54.524	0	1287	40	0.8449601	0.0239743	0.8449601	342.8201	0	9.726929						59	3	2	NaN	NaN	NaN	0.84692	1	11339	11339		1.4396	0	1	4718.9			16045	2392	9342	9533	12665	12665					0.03914973605265004
LYENGSFYF	9	Unmodified	_LYENGSFYF_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1139.5044027192	1	1139.5044	1138.49713	2.32	0.0026436	2.2565	0.0025713	4.5765	0.0052149	1139.5066906816173	28.798	0.1931	28.798	28.774	28.967	0	66	46	1.579413	0.026486635	1.579413	320.13992	0	5.368744						149	9	3	NaN	NaN	NaN	0.015029	1	14390	14390		78.289	36.829	1	10122			16046	1832	9343	9534	12666	12666					-0.06658242547609916
LYENGSFYF	9	Unmodified	_LYENGSFYF_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1139.5044027192	1	1139.5044	1138.49713	1.4882	0.0016958	1.0206	0.0011629	2.5088	0.0028588	1139.5058019982057	28.797	0.072395	28.789	28.765	28.837	-0.0083504	60	49	1.582944	0.028253913	1.5814246	320.85565	0	5.726959						98	4	2	NaN	NaN	NaN	0.51576	1	13923	13923		8.962	0.67169	1	9517.5			16047	1832	9343	9534	12667	12667					-0.06658242547609916
LYENKEIFL	9	Unmodified	_LYENKEIFL_					0	0	0		ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8160643362501	2	584.816064	1167.61758	2.0961	0.0012259	-1.8358	-0.0010736	0.26033	0.00015225	584.8155216778499	25.322	0.0965	25.322	25.298	25.395	0	1125	40	0.9442611	0.023837447	0.9442611	382.67667	0	9.660492						101	5	3	NaN	NaN	NaN	0.53317	1	15408	15408		8.2448	1.2605	1	11418			16048	7589	9344	9535	12668	12668					0.04047165445990686
LYENKEIFL	9	Unmodified						0	0	0		ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.816064	1167.61758	1.8504	0.0010822	-1.906	-0.0011146	-0.055538	-3.248E-05	584.8149843341381	25.346	0.12065	25.334	25.286	25.407	-0.012011	1125	46	0.9442611	0.027504742	0.94274163	382.67667		11.1467285	0.0059139	-3.3475E-05	-0.00075972	NaN	8.2448	125	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13492			16049	7589	9344	9535							0.04047165445990686
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8029569610001	2	562.802957	1123.59136	1.4866	0.00083666	-1.4255	-0.00080229	0.06106	3.4365E-05	562.8020535212596	31.911	0.19309	31.911	31.863	32.056	0	1188	103	0.90571284	0.062529504	0.90571284	367.22223	0	25.352661						406	9	4	NaN	NaN	NaN	0.021751	1	13832	13832		69.782	25.144	1	110410			16050	1394	9345	9536	12669	12669					0.03450896274512161
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1124.5986374554	1	1124.59864	1123.59136	1.6379	0.001842	1.8707	0.0021038	3.5087	0.0039459	1124.6002834420167	31.911	0.09654	31.911	31.863	31.959	0	57	49	1.5847093	0.028247952	1.5847093	321.26453	0	5.726654						81	5	2	NaN	NaN	NaN	0.21199	1	13835	13835		24.562	5.3984	1	5396.9			16051	1394	9345	9536	12670	12670					0.03450896274512161
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1124.5986374554	1	1124.59864	1123.59136	0.90738	0.0010204	-0.23413	-0.00026331	0.67325	0.00075714	1124.598567939899	31.91	0.072376	31.906	31.882	31.954	-0.0037613	57	52	1.5847093	0.030014992	1.5831898	321.26453	0	6.0848694						79	4	2	NaN	NaN	NaN	0.011206	1	13404	13404		89.256	36.476	1	6437.1			16052	1394	9345	9536	12671	12671					0.03450896274512161
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8029569610001	2	562.802957	1123.59136	0.84093	0.00047328	-0.069954	-3.937E-05	0.77097	0.0004339	562.8020144202558	31.91	0.16889	31.906	31.858	32.027	-0.0037613	1185	91	0.90755045	0.05516708	0.906031	367.9673	0	22.367554						381	8	4	NaN	NaN	NaN	0.026295	1	13405	13405		63.958	2.687	1	114320			16053	1394	9345	9536	12672	12672					0.03450896274512161
LYERDCSIQ	9	Unmodified	_LYERDCSIQ_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.763505837	2	563.763506	1125.51246	1.5078	0.00085003	0.86282	0.00048643	2.3706	0.0013365	564.2665110626984	34.95	0.072357	34.95	34.926	34.998	-4.5776E-05	1197	64	0.9001988	0.038627446	0.8986794	364.979	0	15.661194						96	4	3	NaN	NaN	NaN	0.59509	1	13466	13466		5.6942	0	1	5373.9			16054	4904	9346	9537	12673	12673					-0.04527699022082743
LYERDCSIQ	9	Unmodified						0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.763506	1125.51246	1.3047	0.00073552	2.6814	0.0015117	3.9861	0.0022472	563.7656757721476	34.927	0.072289	34.927	34.903	34.975	0	1197	70	0.9001988	0.042310774	0.9001988	364.979		17.154602	-0.011267	0.0012259	0.00075972	NaN	5.6942	81	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5159.2			16055	4904	9346	9537							-0.04527699022082743
LYERVQPV	8	Unmodified	_LYERVQPV_					0	0	0			REV__ENSG00000183340|ENST00000332349|JRKL	REV__ENSG00000183340|ENST00000332349|JRKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.28219172915004	2	502.282192	1002.54983	1.3272	0.00066662	-10.317	-0.0051822	-8.9901	-0.0045156	502.27884382898264	22.862	0.12058	22.848	22.824	22.945	-0.01354	1311	55	0.83019954	0.03322214	0.8286801	337.0974	0	13.489655						161	6	3	NaN	NaN	NaN	0.69898	1	8528	8528		19.118	1.3193	1	13556	+		16056	10888	9347	9538	12674	12674					0.048657603058586574
LYESFRNSV	9	Unmodified	_LYESFRNSV_					0	0	0			REV__USP9X-BLVRB|1|fusion	REV__USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.5527498953	1	1114.55275	1113.54547	1.3393	0.0014927	-5.397	-0.0060152	-4.0576	-0.0045224	1114.5443901456838	35.578	0.12053	35.578	35.578	35.699	0	57	76	1.5847093	0.04414904	1.5847093	321.29974	0	8.951233						264	6	4	NaN	NaN	NaN	0.12866	1	13420	13420		31.675	1.64	1	25783	+		16057	9164	9348	9539	12675	12675					-0.006757489077244827
LYESKLYKI	9	Unmodified	_LYESKLYKI_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.2252635484667	3	386.225264	1155.65396	2.0742	0.0008011	-2.7713	-0.0010703	-0.69711	-0.00026924	386.2243630001792	18.604	0.071957	18.604	18.58	18.652	0	1434	49	0.75435036	0.029668689	0.75435036	458.61926	0	18.037537						145	4	4	NaN	NaN	NaN	0.21199	1	15022	15022		17.198	6.2333	1	17825			16058	1928	9349	9540	12676	12676					0.08236042342718974
LYESKLYKI	9	Unmodified	_LYESKLYKI_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8342570894001	2	578.834257	1155.65396	2.4165	0.0013987	-1.6369	-0.00094749	0.77958	0.00045125	578.833429647727	18.604	0.11995	18.604	18.58	18.7	0	1173	58	0.91489893	0.034903347	0.91489893	370.822	0	14.146851						176	6	4	NaN	NaN	NaN	0.020011	1	15023	15023		71.985	16.027	1	27475			16059	1928	9349	9540	12677	12677					0.08236042342718974
LYESKLYKI	9	Unmodified	_LYESKLYKI_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.8342570894001	2	578.834257	1155.65396	1.7609	0.0010193	-1.0715	-0.00062023	0.68939	0.00039904	578.8338502891348	18.698	0.14398	18.684	18.636	18.78	-0.014059	1173	40	0.91489893	0.023876011	0.9133795	370.822	0	9.677307						192	7	3	NaN	NaN	NaN	0.020011	1	14519	14519		71.985	28.209	1	29407			16060	1928	9349	9540	12678	12678					0.08236042342718974
LYESSEKTKE	10	Unmodified	_LYESSEKTKE_					0	0	0			REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF	REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3009753780501	2	607.300975	1212.5874	1.4568	0.00088471	-5.587	-0.003393	-4.1302	-0.0025083	607.2979539054902	30.149	0.09655	30.149	30.101	30.198	0	1182	46	0.9093879	0.027555227	0.9093879	368.38412	0	11.1623535						90	5	2	NaN	NaN	NaN	0.41164	1	16791	16791		23.118	1.2826	1	10416	+		16061	9532	9350	9541	12679	12679					-0.01039238009843757
LYESSEKTKE	10	Unmodified						0	0	0			REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF	REV__ENST00000574210.5_1_17:2594901-2597328:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	607.300975	1212.5874	1.4568	0.00088471	-5.587	-0.003393	-4.1302	-0.0025083	607.2979539054902	30.149	0.09655	30.149	30.101	30.198	0	1182	46	0.9093879	0.027555227	0.9093879	368.38412		11.1623535	0.015756	-0.00013951	-0.016677	NaN	23.118	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10416	+		16062	9532	9350	9541							-0.01039238009843757
LYFACDNVLW	10	Unmodified	_LYFACDNVLW_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.29444182465	2	622.294442	1242.57433	0.82347	0.00051244	-5.2085	-0.0032412	-4.385	-0.0027288	622.2909605387599	29.038	0.26546	29.031	28.91	29.175	-0.0077229	1152	148	0.92775106	0.08981991	0.9262317	375.72083	0	36.375305						688	12	3	NaN	NaN	NaN	0.33935	1	16841	16841		26.115	3.9886	1	105030			16063	2726	9351	9542	12680	12680					-0.03725347602949114
LYFACDNVLW	10	Unmodified						0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.294442	1242.57433	1.4686	0.00091393	-5.4639	-0.0034002	-3.9953	-0.0024862	622.2913512856272	29.039	0.2655	29.039	28.943	29.208	0	1149	145	0.92958635	0.08798212	0.92958635	376.46405		35.631012	0.0042677	-0.00018608	0.0016773	NaN	26.115	742	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103540			16064	2726	9351	9542							-0.03725347602949114
LYFDRKYLF	9	Unmodified	_LYFDRKYLF_					0	0	0		nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.83987378355	2	632.839874	1263.66519	1.6149	0.001022	-3.5091	-0.0022207	-1.8942	-0.0011987	632.8388242104006	24.936	0.1448	24.936	24.912	25.057	0	1107	40	0.9552588	0.02382207	0.9552588	386.78995	0	9.645691						112	7	3	NaN	NaN	NaN	0.33629	1	18082	18082		16.584	8.9966	1	7971.9			16065	5466	9352	9543	12681	12681					0.04390864436845732
LYFDRKYLF	9	Unmodified						0	0	0		nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	nc|ENSG00000186417|Q6ZMI3-2|GLDN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.839874	1263.66519	1.7103	0.0010824	-4.115	-0.0026041	-2.4047	-0.0015218	632.8374321023566	25.033	0.14476	25.021	24.972	25.117	-0.012011	1107	31	0.9552588	0.01832366	0.9537394	386.78995		7.4193726	0.042151	-0.00035931	-0.00075972	NaN	16.584	105	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7720.8			16066	5466	9352	9543							0.04390864436845732
LYFGNYYYK	9	Unmodified	_LYFGNYYYK_					0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.7951319289	2	615.795132	1229.57571	0.61827	0.00038073	1.0497	0.0006464	1.668	0.0010271	616.2963395306911	30.897	0.26545	30.897	30.753	31.018	0	1143	97	0.9332562	0.058749676	0.9332562	377.99417	0	23.795227						563	12	3	NaN	NaN	NaN	0.27442	1	17249	17249		20.555	11.593	1	64684	+		16067	10365	9353	9544	12682	12682					-0.029893902425328633
LYFGNYYYK	9	Unmodified						0	0	0			REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	REV__nc|ENSG00000165046|Q2VYF4-3|LETM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.795132	1229.57571	0.61827	0.00038073	1.0497	0.0006464	1.668	0.0010271	616.2963395306911	30.897	0.26545	30.897	30.753	31.018	0	1143	97	0.9332562	0.058749676	0.9332562	377.99417		23.795227	0	0	0	NaN	20.555	563	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64684	+		16068	10365	9353	9544							-0.029893902425328633
LYFGQGYKTF	10	Unmodified	_LYFGQGYKTF_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.30840647965	2	612.308406	1222.60226	1.0275	0.00062915	8.0132	0.0049065	9.0407	0.0055357	612.3144582512505	28.822	0.1448	28.822	28.677	28.822	0	1176	64	0.9130621	0.038569033	0.9130621	369.83838	0	15.622498						282	7	3	NaN	NaN	NaN	0.5358	1	17046	17046		17.97	0.77127	1	38784	+		16069	8592	9354	9545	12683	12683					-0.00013701351213057933
LYFHENQLI	9	Unmodified	_LYFHENQLI_					0	0	0		ENST00000482601.1_1_2:144885858-144903287:-|nuORF;nc|ENSG00000121964|Q4AE62-3|GTDC1;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8060309662001	2	588.806031	1175.59751	0.953	0.00056113	1.479	0.00087085	2.432	0.001432	588.8066586303999	31.332	0.12069	31.332	31.259	31.38	0	1146	88	0.93142134	0.053221762	0.93142134	377.44324	0	21.56726						362	6	4	NaN	NaN	NaN	0.23112	1	15672	15672		23.334	0.21685	1	86260			16070	2311	9355	9546	12684	12684					0.01673414506035442
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8085736551501	2	574.808574	1147.60259	1.7417	0.0010012	-2.7854	-0.0016011	-1.0437	-0.0005999	574.807212358579	25.009	0.1689	25.009	24.985	25.153	0	1170	58	0.91673553	0.034899533	0.91673553	371.59714	0	14.146484						190	8	4	NaN	NaN	NaN	0.14301	1	14725	14725		29.598	6.4807	1	55539			16071	2815	9356	9547	12685	12685					0.03469718368660324
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8085736551501	2	574.808574	1147.60259	1.3816	0.00079414	-2.9017	-0.0016679	-1.5201	-0.00087379	574.807212695283	25.033	0.19298	25.021	24.996	25.189	-0.012011	1170	61	0.91673553	0.036738336	0.9152161	371.59714	0	14.891846						276	9	4	NaN	NaN	NaN	0.021105	1	14233	14233		70.6	33.297	1	55722			16072	2815	9356	9547	12686	12686					0.03469718368660324
LYFIPYVF	8	Unmodified	_LYFIPYVF_					0	0	0		nc|ENSG00000145832|Q6ZT89-2|SLC25A48;ENSG00000145832|ENST00000681962|SLC25A48	nc|ENSG00000145832|Q6ZT89-2|SLC25A48	nc|ENSG00000145832|Q6ZT89-2|SLC25A48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.28895412875	2	531.288954	1060.56336	0.67453	0.00035837	6.333	0.0033646	7.0075	0.003723	531.292187790729	27.035	0.096565	27.025	27.001	27.098	-0.010124	1254	97	0.8652351	0.058908522	0.86371565	351.06302	0	23.901703						146	5	2	NaN	NaN	NaN	0.81214	1	10887	10887		7.5902	1.8961	1	15730			16073	3534	9357	9548	12687	12687					0.035496180850714154
LYFKYGRNYI	10	Unmodified	_LYFKYGRNYI_					0	0	0			REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.8560551640002	2	668.856055	1335.69756	2.0752	0.001388	-3.0606	-0.0020471	-0.98543	-0.00065911	668.8543641846483	25.877	0.04826	25.877	25.877	25.926	0	1116	37	0.94976085	0.021988392	0.94976085	384.3395	0	8.898041						49	3	2	NaN	NaN	NaN	0.77421	1	19348	19348		1.9246	0	1	4205	+		16074	12398	9358	9549	12688	12688					0.043136518398569024
LYFKYGRNYI	10	Unmodified						0	0	0			REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	668.856055	1335.69756	2.0752	0.001388	-3.0606	-0.0020471	-0.98543	-0.00065911	668.8543641846483	25.877	0.04826	25.877	25.877	25.926	0	1116	37	0.94976085	0.021988392	0.94976085	384.3395		8.898041	-0.0061523	0.00094375	-0.001073	NaN	1.9246	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4205	+		16075	12398	9358	9549							0.043136518398569024
LYFKYGRNYI	10	Unmodified						0	0	0			REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	REV__ENST00000483243.5_1_6:45296148-45339654:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	668.856055	1335.69756	2.7471	0.0018374	-4.5381	-0.0030353	-1.791	-0.0011979	669.3547078314805	25.901	0.096535	25.89	25.865	25.962	-0.0116	1110	31	0.95342636	0.018325627	0.9519069	385.82285		7.4158325	0.0061523	-0.0010327	0.001073	NaN	1.9246	55	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3842	+		16076	12398	9358	9549							0.043136518398569024
LYFLATLLM	9	Unmodified	_LYFLATLLM_					0	0	0		ENSG00000177042|ENST00000397510|TMEM80;nc|ENSG00000177042|Q96HE8-2|TMEM80;ENST00000492023.1_1_11:700162-703983:+|nuORF	ENSG00000177042|ENST00000397510|TMEM80	ENSG00000177042|ENST00000397510|TMEM80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.8091964318501	2	542.809196	1083.60384	1.5836	0.00085961	-7.591	-0.0041205	-6.0074	-0.0032609	542.8051037516864	23.803	0.096317	23.803	23.754	23.851	0	1242	43	0.87260187	0.025778055	0.87260187	353.95557	0	10.45639						108	5	4	NaN	NaN	NaN	0.24994	1	12134	12134		22.126	1.1739	1	14377			16077	5055	9359	9550	12689	12689					0.06538216413196096
LYFLATLLM	9	Unmodified						0	0	0		ENSG00000177042|ENST00000397510|TMEM80;nc|ENSG00000177042|Q96HE8-2|TMEM80;ENST00000492023.1_1_11:700162-703983:+|nuORF	ENSG00000177042|ENST00000397510|TMEM80	ENSG00000177042|ENST00000397510|TMEM80	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.809196	1083.60384	1.6831	0.00091358	-9.9646	-0.0054089	-8.2816	-0.0044953	542.8037282085769	23.826	0.096462	23.813	23.765	23.861	-0.013048	1242	37	0.87260187	0.022095501	0.8710824	353.9556		8.9626465	0.0053898	-0.0018829	-0.00075972	NaN	22.126	95	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13804			16078	5055	9359	9550							0.06538216413196096
LYFLFAPTL	9	Unmodified	_LYFLFAPTL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.6077455787	1	1084.60775	1083.60047	0.99728	0.0010817	-1.347	-0.0014609	-0.34968	-0.00037926	1084.6056326364928	38.348	0.048058	38.348	38.324	38.372	0	54	46	1.5864743	0.02647829	1.5864743	321.76642	0	5.37027						42	3	2	NaN	NaN	NaN	0.062836	1	12136	12136		41.46	17.61	1	2209.3			16079	613	9360	9551	12690	12690					0.06201289630848805
LYFLTALLL	9	Unmodified	_LYFLTALLL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.83098611895	2	533.830986	1065.64742	1.8949	0.0010116	3.9538	0.0021106	5.8487	0.0031222	533.833261208058	28.484	0.072433	28.484	28.46	28.532	0	1245	55	0.87076044	0.03313607	0.87076044	353.2833	0	13.443878						66	4	2	NaN	NaN	NaN	0.36492	1	11382	11382		15.175	0.75036	1	8590.1			16080	3536	9361	9552	12691	12691					0.11722149181991881
LYFNQNNLE	9	Unmodified	_LYFNQNNLE_					0	0	0			REV__ENST00000546026.1_3_12:120172199-120173150:-|nuORF	REV__ENST00000546026.1_3_12:120172199-120173150:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7774704920001	2	577.77747	1153.54039	0.93841	0.00054219	-4.8663	-0.0028116	-3.9279	-0.0022694	577.7755375439649	40.296	0.14433	40.296	40.248	40.392	0	1200	37	0.89836043	0.022062063	0.89836043	364.12656	0	8.942261						109	7	3	NaN	NaN	NaN	0.51576	1	14916	14916		8.962	1.4216	1	8109.1	+		16081	9354	9362	9553	12692	12692					-0.030240527703199405
LYFPQNIQ	8	Unmodified	_LYFPQNIQ_					0	0	0			REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.76891717840005	2	511.768917	1021.52328	2.2447	0.0011488	-9.2244	-0.0047207	-6.9796	-0.003572	511.7650284169846	22.019	0.048151	22.019	21.97	22.019	0	1290	28	0.84311575	0.016601205	0.84311575	342.25586	0	6.739105						41	3	2	NaN	NaN	NaN	0.84207	1	9434	9434		3.5732	0.36161	1	2566.3	+		16082	12610	9363	9554	12693	12693					0.013380714145228012
LYFPQNIQ	8	Unmodified						0	0	0			REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.768917	1021.52328	2.2447	0.0011488	-9.2244	-0.0047207	-6.9796	-0.003572	511.7650284169846	22.019	0.048151	22.019	21.97	22.019	0	1290	28	0.84311575	0.016601205	0.84311575	342.25586		6.739105	0.019097	-7.5627E-05	0.00075972	NaN	3.5732	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2566.3	+		16083	12610	9363	9554							0.013380714145228012
LYFPQNIQ	8	Unmodified						0	0	0			REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.768917	1021.52328	2.9532	0.0015113	-9.1121	-0.0046633	-6.1589	-0.0031519	512.2684705029588	21.994	0.048082	21.98	21.98	22.028	-0.013897	1290	28	0.84311575	0.016601205	0.8415963	342.25586		6.739105	-0.019097	3.9311E-05	-0.00075972	NaN	3.5732	25	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231.8	+		16084	12610	9363	9554							0.013380714145228012
LYFVYSFR	8	Unmodified	_LYFVYSFR_					0	0	0			REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	REV__NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5669433965	1	1094.56694	1093.55967	1.2626	0.001382	8.6727	0.0094928	9.9353	0.010875	1094.576531219141	33.673	0.14484	33.673	33.6	33.745	0	75	79	1.5741152	0.045932055	1.5741152	319.22314	0	9.314819						238	7	3	NaN	NaN	NaN	0.84512	1	12562	12562		2.4615	0.28518	1	35412	+		16085	10680	9364	9555	12694	12694					0.016629483112183152
LYGAAVLL	8	Unmodified	_LYGAAVLL_					0	0	0			REV__CCDC93|p.F40L|1|0.27|ENSG00000125633|chr2:118008581-118008581|G/T|missense_variant	REV__CCDC93|p.F40L|1|0.27|ENSG00000125633|chr2:118008581-118008581|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.4974668478002	1	819.497467	818.49019	1.4652	0.0012007	0.066231	5.4276E-05	1.5315	0.001255	819.497090089795	29.907	0.048265	29.9	29.876	29.924	-0.0070667	408	46	1.3769034	0.026803493	1.375384	280.39655	0	5.4583435						70	3	2	NaN	NaN	NaN	0.81214	1	4893	4893		7.5902	0	1	6514.3	+		16086	8184	9365	9556	12695	12695					0.07368489362477249
LYGAPGVEF	9	Unmodified	_LYGAPGVEF_					0	0	0		nc|ENSG00000073350|Q6P1M3-3|LLGL2;nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2	nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-3|LLGL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4774596872002	1	952.47746	951.470183	1.6015	0.0015254	-0.44491	-0.00042377	1.1566	0.0011016	952.4771702844406	26.77	0.24181	26.77	26.722	26.964	0	285	118	1.4500183	0.069371104	1.4500183	294.60376	0	14.094299						496	11	4	NaN	NaN	NaN	0.013314	1	7122	7122		82.858	0	1	67132			16087	811	9366	9557	12696	12696					-0.007493063681295098
LYGAPGVEF	9	Unmodified	_LYGAPGVEF_					0	0	0		nc|ENSG00000073350|Q6P1M3-3|LLGL2;nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2	nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-3|LLGL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4774596872002	1	952.47746	951.470183	1.3041	0.0012421	-0.43585	-0.00041514	0.86827	0.000827	952.4767262325639	26.77	0.16896	26.759	26.711	26.88	-0.010645	282	112	1.4517976	0.06580663	1.4502782	294.96527	0	13.370117						397	8	3	NaN	NaN	NaN	0.24994	1	6987	6987		22.126	0	1	60255			16088	811	9366	9557	12697	12697					-0.007493063681295098
LYGCSELFNAT	11	Unmodified	_LYGCSELFNAT_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000556256.1_1_14:31191003-31204812:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.2789887257001	2	609.278989	1216.54342	0.44774	0.0002728	-2.4345	-0.0014833	-1.9868	-0.0012105	609.2774498475703	33.14	0.12064	33.138	33.114	33.235	-0.0024757	1161	70	0.9222442	0.04224229	0.92072475	373.57843	0	17.111328						273	6	4	NaN	NaN	NaN	0.64343	1	16225	16225		11.17	0.81017	1	43632			16089	1088	9367	9558	12698	12698					-0.056185457078299805
LYGCSELFNAT	11	Unmodified						0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;ENST00000556256.1_1_14:31191003-31204812:+|nuORF	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.278989	1216.54342	0.57477	0.0003502	-5.4976	-0.0033496	-4.9228	-0.0029994	609.2764234679754	33.142	0.12064	33.142	33.118	33.238	0	1164	76	0.9204082	0.04592544	0.9204082	372.83472		18.603241	0.0018964	-0.0020818	-0.00015829	NaN	11.17	252	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35502			16090	1088	9367	9558							-0.056185457078299805
LYGEIIEIW	9	Unmodified	_LYGEIIEIW_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.30533247445	2	568.305332	1134.59611	1.0002	0.00056841	-9.0393	-0.0051371	-8.0391	-0.0045686	568.3006584127972	28.652	0.33782	28.644	28.572	28.909	-0.0083485	1209	64	0.892844	0.038623214	0.8913246	361.96204	0	15.6579895						367	15	4	NaN	NaN	NaN	0.11467	1	13809	13809		33.698	7.5834	1	53033	+		16091	13570	9368	9559	12699	12699					0.03419780417266338
LYGFIFYIF	9	Unmodified	_LYGFIFYIF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.81533605475	2	591.815336	1181.61612	0.8417	0.00049813	-4.5658	-0.0027021	-3.7241	-0.002204	591.8124599453644	29.328	0.16891	29.32	29.296	29.465	-0.0077209	1188	109	0.90571284	0.0661791	0.9041934	367.00363	0	26.816406						384	8	3	NaN	NaN	NaN	0.48931	1	15291	15291		10.052	0	1	64108			16092	3933	9369	9560	12700	12700					0.032575761478710774
LYGFIFYIF	9	Unmodified						0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.815336	1181.61612	1.3419	0.00079416	-5.3846	-0.0031867	-4.0427	-0.0023925	591.8121487951682	29.329	0.19304	29.329	29.28	29.474	0	1191	103	0.90387505	0.062502444	0.90387505	366.2589		25.3266	0.0042606	-0.00059113	-0.00015919	NaN	10.052	413	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69560			16093	3933	9369	9560							0.032575761478710774
LYGFVIGLFI	10	Unmodified	_LYGFVIGLFI_					0	0	0		tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	tr|U7SK69|U7SK69_FUSNUV-typeH+-transportingATPasesubunitKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02121PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.3364356376001	2	571.336436	1140.65832	0.83459	0.00047683	-5.6689	-0.0032389	-4.8343	-0.002762	571.3327353395392	30.703	0.12062	30.698	30.673	30.794	-0.0057564	1188	67	0.90571284	0.040442765	0.9041934	367.15567	0	16.394592						165	6	3	NaN	NaN	NaN	0.6337	1	14014	14014		12.588	0	1	35794			16094	13752	9370	9561	12701	12701					0.09361551556276027
LYGIHKQK	8	Unmodified	_LYGIHKQK_					0	0	0		nc|ENSG00000014257|P15309-3|ACP3;ENSG00000014257|ENST00000336375|ACP3;nc|ENSG00000014257|P15309-2|ACP3	nc|ENSG00000014257|P15309-3|ACP3	nc|ENSG00000014257|P15309-3|ACP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5781767848001	1	986.578177	985.5709	1.8551	0.0018302	7.0854	0.0069903	8.9406	0.0088206	986.5860357104779	34.71	0.1447	34.71	34.589	34.734	0	198	76	1.5015416	0.04436493	1.5015416	304.92117	0	9.009277						127	7	2	NaN	NaN	NaN	0.79379	1	8078	8078		10.052	2.464	1	11505			16095	437	9371	9562	12702	12702					0.07753770405372507
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF;GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.2791177239499	2	506.279118	1010.54368	1.912	0.00096802	-1.9801	-0.0010025	-0.068083	-3.4469E-05	506.2777041948371	22.115	0.14478	22.115	22.067	22.212	0	1293	52	0.84127116	0.031361163	0.84127116	341.55637	0	12.732666						230	7	4	NaN	NaN	NaN	0.097143	1	9004	9004		36.235	7.3392	1	51420			16096	2362	9372	9563	12703	12703					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF;GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2791177239499	2	506.279118	1010.54368	1.011	0.00051184	-0.82597	-0.00041817	0.18501	9.3666E-05	506.27867387885203	22.139	0.19297	22.125	22.077	22.27	-0.013731	1290	52	0.84311575	0.031357765	0.8415963	342.30527	0	12.731262						234	9	4	NaN	NaN	NaN	0.31471	1	8828	8828		17.97	2.507	1	48866			16097	2362	9372	9563	12704	12704					0.038832420743119656
LYGLASLLI	9	Unmodified	_LYGLASLLI_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5920955145001	1	962.592096	961.584819	0.86395	0.00083163	0.21026	0.0002024	1.0742	0.001034	962.5925265764811	33.938	0.096539	33.938	33.914	34.01	0	186	37	1.5086359	0.021278262	1.5086359	306.46722	0	4.3224792						59	5	2	NaN	NaN	NaN	0.58547	1	7385	7385		6.0903	2.937	1	4012.2	+		16098	9638	9373	9564	12705	12705					0.10249003113801791
LYGLASLLI	9	Unmodified						0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	962.592096	961.584819	0.86395	0.00083163	0.21026	0.0002024	1.0742	0.001034	962.5925265764811	33.938	0.096539	33.938	33.914	34.01	0	186	37	1.5086359	0.021278262	1.5086359	306.46722		4.3224792	0.0012441	-9.2366E-05	-0.0010133	NaN	6.0903	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4012.2	+		16099	9638	9373	9564							0.10249003113801791
LYGLIVALI	9	Unmodified	_LYGLIVALI_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.6284810208002	1	974.628481	973.621205	1.0511	0.0010244	0.53172	0.00051823	1.5828	0.0015427	974.6294168330156	39.093	0.16888	39.093	39.044	39.213	0	159	103	1.5245869	0.060224295	1.5245869	309.65347	0	12.231964						370	8	3	NaN	NaN	NaN	0.055365	1	7720	7720		44.632	0	1	52897			16100	5441	9374	9565	12706	12706					0.13333880010532084
LYGLIVALI	9	Unmodified	_LYGLIVALI_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.6284810208002	1	974.628481	973.621205	1.551	0.0015117	0.49034	0.0004779	2.0414	0.0019896	974.6287321229619	39.066	0.16892	39.071	39.047	39.216	0.0046806	156	100	1.5263584	0.05846238	1.5248389	310.01324	0	11.874084						379	8	3	NaN	NaN	NaN	0.055365	1	7570	7570		44.632	0	1	56851			16101	5441	9374	9565	12707	12707					0.13333880010532084
LYGLVGVLL	9	Unmodified	_LYGLVGVLL_					0	0	0			REV__nc|ENSG00000096996|P42701-2|IL12RB1	REV__nc|ENSG00000096996|P42701-2|IL12RB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5971808924002	1	946.597181	945.589904	1.7403	0.0016474	0.43186	0.00040879	2.1722	0.0020562	946.5972293941018	34.517	0.16891	34.517	34.469	34.638	0	249	76	1.4713576	0.044426084	1.4713576	298.96582	0	9.026978						249	8	4	NaN	NaN	NaN	0.16059	1	6979	6979		27.861	0	1	35941	+		16102	8764	9375	9566	12708	12708					0.11493306976421991
LYGNIIDNL	9	Unmodified	_LYGNIIDNL_					0	0	0		ENST00000492240.5_1_20:2640597-2640995:-|nuORF;nc|ENSG00000101365|O43837-3|IDH3B;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	ENST00000492240.5_1_20:2640597-2640995:-|nuORF	ENST00000492240.5_1_20:2640597-2640995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5516872627998	1	1034.55169	1033.54441	1.4904	0.0015419	-1.9369	-0.0020038	-0.44642	-0.00046184	1034.5508387046232	29.449	0.14483	29.449	29.425	29.57	0	165	61	1.5210435	0.03543353	1.5210435	308.68372	0	7.190979						146	7	2	NaN	NaN	NaN	0.032764	1	9932	9932		55.494	10.855	1	39342			16103	1321	9376	9567	12709	12709					0.028980367233543802
LYGNIIDNL	9	Unmodified	_LYGNIIDNL_					0	0	0		ENST00000492240.5_1_20:2640597-2640995:-|nuORF;nc|ENSG00000101365|O43837-3|IDH3B;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	ENST00000492240.5_1_20:2640597-2640995:-|nuORF	ENST00000492240.5_1_20:2640597-2640995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5516872627998	1	1034.55169	1033.54441	1.0593	0.0010959	-2.2383	-0.0023156	-1.179	-0.0012197	1034.5508616191685	29.449	0.14476	29.442	29.417	29.562	-0.0070667	162	61	1.5228153	0.03542614	1.5212959	309.04327	0	7.189453						124	7	2	NaN	NaN	NaN	0.059222	1	9724	9724		42.995	11.319	1	31392			16104	1321	9376	9567	12710	12710					0.028980367233543802
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4723743093001	1	956.472374	955.465098	1.9184	0.0018349	0.97446	0.00093204	2.8929	0.0027669	956.4721982762403	25.274	0.21717	25.274	25.202	25.419	0	282	94	1.4517976	0.055170417	1.4517976	294.94766	0	11.208435						677	10	4	NaN	NaN	NaN	0.023074	1	7215	7215		68.108	15.484	1	102640			16105	3665	9377	9568	12711	12711					-0.01441610230756396
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4723743093001	1	956.472374	955.465098	2.1139	0.0020219	1.0951	0.0010474	3.209	0.0030693	956.4725429924006	25.274	0.2895	25.262	25.189	25.479	-0.012011	279	97	1.4535767	0.056959152	1.4520572	295.3091	0	11.571838						737	13	4	NaN	NaN	NaN	0.012648	1	7074	7074		84.879	26.28	1	110720			16106	3665	9377	9568	12712	12712					-0.01441610230756396
LYGRHFNYL	9	Unmodified	_LYGRHFNYL_					0	0	0		nc|ENSG00000121274|Q8NDF8-2|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	nc|ENSG00000121274|Q8NDF8-2|TENT4B	nc|ENSG00000121274|Q8NDF8-2|TENT4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8063653172001	2	591.806365	1181.59818	1.7212	0.0010186	-2.2897	-0.001355	-0.56848	-0.00033643	591.8039690848722	18.94	0.12	18.94	18.916	19.036	0	1146	79	0.93142134	0.047744393	0.93142134	377.42102	0	19.346497						106	6	3	NaN	NaN	NaN	0.23112	1	15881	15881		23.334	4.1708	1	10427			16107	7936	9378	9569	12713	12713					0.014642539457554449
LYGRLLVTF	9	Unmodified	_LYGRLLVTF_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.3238595786	2	541.32386	1080.63317	1.8273	0.00098913	-2.0978	-0.0011356	-0.27058	-0.00014647	541.3228329182449	27.664	0.26542	27.664	27.615	27.881	0	1254	88	0.8652351	0.053388774	0.8652351	350.97946	0	21.656921						498	12	5	NaN	NaN	NaN	0.011693	1	12030	12030		87.778	35.154	1	167070			16108	2789	9379	9570	12714	12714					0.09607496753687883
LYGRLLVTF	9	Unmodified	_LYGRLLVTF_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.3238595786	2	541.32386	1080.63317	1.3462	0.00072871	-1.6804	-0.00090963	-0.33421	-0.00018092	541.3229011978317	27.711	0.31372	27.702	27.653	27.967	-0.009552	1254	88	0.8652351	0.053382993	0.86371565	350.97946	0	21.654633						539	14	4	NaN	NaN	NaN	0.03618	1	11710	11710		52.78	26.665	1	170760			16109	2789	9379	9570	12715	12715					0.09607496753687883
LYGRLLVTF	9	Unmodified						0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.32386	1080.63317	1.5116	0.00081824	-3.9037	-0.0021132	-2.3921	-0.0012949	541.8226518966329	28.049	0.14478	28.04	28.016	28.161	-0.0089779	1251	31	0.8670771	0.018418849	0.8655577	351.72668		7.471527	0.18817	-0.0018413	0.00016127	NaN	87.778	71	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4639			16110	2789	9379	9570							0.09607496753687883
LYGVFTIHF	9	Unmodified	_LYGVFTIHF_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.79493496365	2	548.794935	1095.57532	1.2068	0.00066226	-0.33623	-0.00018452	0.87053	0.00047774	548.7947120923479	30.463	0.31373	30.463	30.366	30.68	0	1212	67	0.8910048	0.04046023	0.8910048	361.3708	0	16.409729						250	14	2	NaN	NaN	NaN	0.27442	1	12661	12661		20.555	0	1	35835			16111	3771	9380	9571	12716	12716					0.031352348282553066
LYGVFTIHF	9	Unmodified	_LYGVFTIHF_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.79493496365	2	548.794935	1095.57532	1.0006	0.00054913	-0.95712	-0.00052526	0.043483	2.3863E-05	548.793879719234	30.462	0.24128	30.456	30.36	30.601	-0.0057545	1209	61	0.892844	0.0367741	0.8913246	362.11673	0	14.914703						323	11	4	NaN	NaN	NaN	0.12945	1	12337	12337		31.561	9.4347	1	40346			16112	3771	9380	9571	12717	12717					0.031352348282553066
LYGYKQLWVE	10	Unmodified	_LYGYKQLWVE_					0	0	0			REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.84261343775	2	649.842613	1297.67067	1.0189	0.00066214	-10.624	-0.0069039	-9.605	-0.0062417	649.8350178934708	20.959	0.07218	20.945	20.945	21.017	-0.014088	1113	37	0.9515937	0.02199316	0.95007426	385.19678	0	8.902618						90	4	3	NaN	NaN	NaN	0.5626	1	17898	17898		16.858	2.4333	1	8628.1	+		16113	10122	9381	9572	12718	12718					0.03374543228642324
LYHCKRFNTFI	11	Unmodified	_LYHCKRFNTFI_					0	0	0		ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3740891291501	2	721.374089	1440.73363	1.2928	0.00093257	-6.0736	-0.0043813	-4.7808	-0.0034487	721.3695036595566	28.943	0.048294	28.943	28.918	28.967	0	987	31	1.0283957	0.01824689	1.0283957	415.84982	0	7.378418						58	3	3	NaN	NaN	NaN	0.74794	1	20327	20327		4.3102	0.38204	1	3979.6			16114	6135	9382	9573	12719	12719					0.03088785745057976
LYHESWNTEE	10	Unmodified	_LYHESWNTEE_					0	0	0		MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant;ENSG00000061794|ENST00000081029|MRPS35	MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.2805742869501	2	654.280574	1306.5466	1.8224	0.0011923	-1.4343	-0.00093845	0.38805	0.00025389	654.2793877922958	25.901	0.21718	25.901	25.853	26.07	0	1119	61	0.9479278	0.036671042	0.9479278	383.68533	0	14.843048						177	10	2	NaN	NaN	NaN	0.5626	1	18873	18873		16.858	0.27415	1	46857			16115	646	9383	9574	12720	12720					-0.09441579329450178
LYHESWNTEE	10	Unmodified						0	0	0		MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant;ENSG00000061794|ENST00000081029|MRPS35	MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	654.280574	1306.5466	2.021	0.0013223	4.1937	0.0027439	6.2147	0.0040662	654.2837026378339	26.094	0.048277	26.083	26.059	26.107	-0.011137	1122	52	0.9460945	0.031165361	0.9445751	382.9433		12.614563	0.090873	0.0062091	-0.0016763	NaN	16.858	62	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4315.3			16116	646	9383	9574							-0.09441579329450178
LYHFCLYWNR	10	Unmodified	_LYHFCLYWNR_					0	0	0		ENST00000564912.5_1_16:57684199-57687923:+|nuORF;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000564912.5_1_16:57684199-57687923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.8398821710501	2	707.839882	1413.66521	1.3518	0.00095686	6.9948	0.0049512	8.3466	0.0059081	707.8445581233705	22.139	0.072422	22.139	22.115	22.187	0	1044	40	0.99369496	0.02377075	0.99369496	401.89108	0	9.613861						57	4	2	NaN	NaN	NaN	0.72631	1	20172	20172		6.2502	0.55606	1	5857.4			16117	5922	9384	9575	12721	12721					-0.025074588347933968
LYHRVDVIF	9	Unmodified	_LYHRVDVIF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000569448.1_1_16:8993400-8995074:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.32439089485	2	581.324391	1160.63423	1.8066	0.0010502	-3.5629	-0.0020712	-1.7563	-0.001021	581.3226523213661	21.561	0.1446	21.561	21.513	21.657	0	1173	58	0.91489893	0.034910858	0.91489893	370.80322	0	14.14917						190	7	4	NaN	NaN	NaN	0.3106	1	15182	15182		18.233	3.0581	1	15247			16118	5510	9385	9576	12722	12722					0.06033711122586283
LYHSLYYLLAM	11	Unmodified	_LYHSLYYLLAM_					0	0	0			REV__ENSG00000165807|ENST00000298705|PPP1R36	REV__ENSG00000165807|ENST00000298705|PPP1R36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.8599489111501	2	693.859949	1385.70534	1.7491	0.0012136	-6.7495	-0.0046832	-5.0004	-0.0034696	693.8575106413599	25.081	0.38608	25.081	24.816	25.202	0	1047	100	0.99186665	0.060373604	0.99186665	401.2301	0	24.422363						570	17	4	NaN	NaN	NaN	0.40602	1	19938	19938		21.835	1.3217	1	98168	+		16119	10401	9386	9577	12723	12723					0.02792043045110404
LYIAGFSLL	9	Unmodified	_LYIAGFSLL_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5764454503002	1	996.576445	995.569169	1.7292	0.0017233	0.39732	0.00039596	2.1265	0.0021192	996.5766162716917	36.832	0.072231	36.832	36.808	36.88	0	123	40	1.5458313	0.023001313	1.5458313	313.87173	0	4.670288						79	4	2	NaN	NaN	NaN	0.013926	1	8428	8428		81.001	15.329	1	5749.2			16120	5438	9387	9578	12724	12724					0.07120716596762122
LYIAGFSLL	9	Unmodified	_LYIAGFSLL_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5764454503002	1	996.576445	995.569169	1.7724	0.0017663	2.3857	0.0023775	4.1581	0.0041438	996.5784447355941	36.83	0.096218	36.832	36.807	36.904	0.0016747	123	37	1.5458313	0.021230817	1.5443119	313.8717	0	4.310791						81	5	2	NaN	NaN	NaN	0.024986	1	8258	8258		65.672	26.213	1	5554.2			16121	5438	9387	9578	12725	12725					0.07120716596762122
LYIAGNQETR	10	Unmodified	_LYIAGNQETR_					0	0	0			REV__nc|ENSG00000153029|Q95460-5|MR1	REV__nc|ENSG00000153029|Q95460-5|MR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8040195935	2	582.80402	1163.59349	1.5238	0.00088806	-2.0282	-0.001182	-0.50441	-0.00029397	582.8014128495944	21.778	0.19256	21.764	21.691	21.884	-0.013895	1170	76	0.91673553	0.045945227	0.9152161	371.5365	0	18.62082						228	9	3	NaN	NaN	NaN	0.20271	1	14747	14747		35.296	0	1	19780	+		16122	13143	9388	9579	12726	12726					0.018233250123103062
LYIAGNQETR	10	Unmodified						0	0	0			REV__nc|ENSG00000153029|Q95460-5|MR1	REV__nc|ENSG00000153029|Q95460-5|MR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.80402	1163.59349	1.5238	0.00088806	-2.0282	-0.001182	-0.50441	-0.00029397	582.8014128495944	21.778	0.19256	21.764	21.691	21.884	-0.013895	1170	76	0.91673553	0.045945227	0.9152161	371.5365		18.62082	-0.0070077	-0.0025044	-0.00075972	NaN	35.296	228	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19780	+		16123	13143	9388	9579							0.018233250123103062
LYIAVQAVL	9	Unmodified	_LYIAVQAVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.30513550920006	2	495.305136	988.595718	0.9421	0.00046663	-1.1439	-0.00056655	-0.20175	-9.993E-05	495.3049159633724	31.597	0.12068	31.597	31.573	31.694	0	1263	40	0.85970795	0.023953617	0.85970795	349.14578	0	9.728058						124	6	3	NaN	NaN	NaN	0.14945	1	8173	8173		28.667	10.886	1	18472			16124	1989	9389	9580	12727	12727					0.10096405488093296
LYIAVQAVL	9	Unmodified	_LYIAVQAVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.30513550920006	2	495.305136	988.595718	0.21991	0.00010892	-0.81599	-0.00040416	-0.59608	-0.00029524	495.3046426447809	31.596	0.12067	31.592	31.568	31.688	-0.0044174	1260	40	0.8615505	0.023953617	0.8600311	349.8941	0	9.728058						125	6	3	NaN	NaN	NaN	0.08074	1	8006	8006		38.608	5.4709	1	20397			16125	1989	9389	9580	12728	12728					0.10096405488093296
LYIAVQAVL	9	Unmodified	_LYIAVQAVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.6029945518002	1	989.602995	988.595718	0.88207	0.0008729	-1.3999	-0.0013853	-0.51783	-0.00051245	989.6015273660189	31.596	0.1448	31.592	31.568	31.712	-0.0044174	144	82	1.533442	0.047822714	1.5319226	311.38617	0	9.711029						220	7	3	NaN	NaN	NaN	0.042649	1	8007	8007		50.033	2.7112	1	32663			16126	1989	9389	9580	12729	12729					0.10096405488093296
LYIAVQAVL	9	Unmodified						0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	989.602995	988.595718	1.4247	0.0014098	-0.26399	-0.00026125	1.1607	0.0011486	989.6019166256826	31.597	0.14483	31.597	31.573	31.718	0	144	76	1.533442	0.04428029	1.533442	311.38614		8.991699	0.0027431	0.00042367	0.00075972	NaN	50.033	232	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37590			16127	1989	9389	9580							0.10096405488093296
LYIAYQFLL	9	Unmodified	_LYIAYQFLL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3260679165501	2	572.326068	1142.63758	1.4654	0.00083867	-2.4441	-0.0013988	-0.97871	-0.00056014	572.324650231528	36.543	0.14468	36.543	36.495	36.639	0	1152	40	0.92775106	0.02385801	0.92775106	376.0817	0	9.671326						152	7	3	NaN	NaN	NaN	0.13477	1	14561	14561		30.791	3.0023	1	18551			16128	3046	9390	9581	12730	12730					0.0719696117660078
LYIDTRICFHF	11	Unmodified	_LYIDTRICFHF_					0	0	0			REV__ENST00000526288.1_1_11:28119059-28119494:-|nuORF	REV__ENST00000526288.1_1_11:28119059-28119494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.3606474029	2	714.360647	1426.70674	1.1977	0.00085562	8.1314	0.0058088	9.3291	0.0066644	714.8678420510856	26.698	0.048262	26.698	26.674	26.722	0	1053	52	0.9882094	0.03109485	0.9882094	399.6371	0	12.574921						70	3	2	NaN	NaN	NaN	0.74155	1	20260	20260		4.7291	1.5175	1	6785.3	+		16129	12625	9391	9582	12731	12731					0.010456771338567705
LYIDWTENYKH	11	Unmodified	_LYIDWTENYKH_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.35661627	2	741.356616	1480.69868	1.4093	0.0010448	-5.016	-0.0037187	-3.6067	-0.0026739	741.3544792659663	20.381	0.048059	20.381	20.357	20.405	0	1062	40	0.9827221	0.023781002	0.9827221	397.27887	0	9.6138						56	3	2	NaN	NaN	NaN	0.44296	1	20515	20515		20.513	7.0503	1	4522.9		+	16130	208	9392	9583	12732	12732					-0.02244178581918277
LYIDWTENYKH	11	Unmodified						0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	741.356616	1480.69868	2.2959	0.0017021	-3.7753	-0.0027988	-1.4793	-0.0010967	741.3546717547348	20.381	0.024126	20.367	20.367	20.391	-0.014141	1062	43	0.9827221	0.025611699	0.98120266	397.27887		10.353882	-0.0070991	0.00087114	-0.00075972	NaN	20.513	56	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3192.9		+	16131	208	9392	9583							-0.02244178581918277
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8107819931	2	593.810782	1185.60701	0.74143	0.00044027	-4.8186	-0.0028613	-4.0772	-0.0024211	593.8078416768748	33.431	0.28957	33.431	33.287	33.576	0	1155	73	0.92591566	0.044062257	0.92591566	375.1754	0	17.85376						399	13	5	NaN	NaN	NaN	0.062072	1	16028	16028		41.785	0	1	83862			16132	2597	9393	9584	12733	12733					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8107819931	2	593.810782	1185.60701	0.93416	0.00055472	-3.7441	-0.0022233	-2.81	-0.0016686	593.8092146049579	34.107	0.072399	34.107	34.083	34.155	0	1155	31	0.92591566	0.01835531	0.92591566	375.1754	0	7.4374695						46	4	2	NaN	NaN	NaN	0.53317	1	16029	16029		8.2448	0	1	3689.3			16133	2597	9393	9584	12734	12734					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8107819931	2	593.810782	1185.60701	1.1571	0.00068709	-1.516	-0.0009002	-0.35888	-0.00021311	593.8097697913007	32.973	0.31376	32.973	32.828	33.142	0	1158	76	0.92408	0.045895696	0.92408	374.4316	0	18.59665						554	14	5	NaN	NaN	NaN	0.023828	1	16032	16032		67.154	0	1	246140			16134	2597	9393	9584	12735	12735					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.8107819931	2	593.810782	1185.60701	0.40935	0.00024307	-4.7989	-0.0028497	-4.3896	-0.0026066	593.8078343359808	33.43	0.21721	33.428	33.38	33.597	-0.0018501	1152	73	0.92775106	0.044062257	0.9262317	375.91913	0	17.85376						440	10	4	NaN	NaN	NaN	0.12328	1	15419	15419		32.453	0	1	87022			16135	2597	9393	9584	12736	12736					0.02163182791559848
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.8107819931	2	593.810782	1185.60701	1.0362	0.00061531	-1.431	-0.00084977	-0.39484	-0.00023446	593.8096648559201	32.972	0.3135	32.969	32.921	33.235	-0.0024757	1155	97	0.92591566	0.05876869	0.9243962	375.1754	0	23.812714						550	14	5	NaN	NaN	NaN	0.028349	1	15421	15421		61.271	0	1	243420			16136	2597	9393	9584	12737	12737					0.02163182791559848
LYIENQFFI	9	Unmodified						0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.810782	1185.60701	0.69345	0.00041178	-1.977	-0.0011739	-1.2835	-0.00076216	593.809861700232	33.937	0.12061	33.936	33.863	33.984	-0.0012474	1152	37	0.92775106	0.022021592	0.9262317	375.91913		8.923004	-0.085728	0.00079266	0.000158	NaN	8.2448	96	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7094.1			16137	2597	9393	9584							0.02163182791559848
LYIGNLTWW	9	Unmodified	_LYIGNLTWW_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6;ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.30566682545	2	583.305667	1164.59678	1.6327	0.00095235	-4.1146	-0.0024001	-2.4819	-0.0014477	583.3032267863429	36.109	0.19297	36.109	36.085	36.278	0	1200	49	0.89836043	0.029422462	0.89836043	364.08572	0	11.924255						213	9	3	NaN	NaN	NaN	0.094712	1	15302	15302		36.586	21.124	1	24891			16138	1816	9394	9585	12738	12738					0.021066198569769767
LYIGNLTWW	9	Unmodified	_LYIGNLTWW_					0	0	0		ENST00000550987.5_1_12:69633426-69648902:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6;ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	ENST00000550987.5_1_12:69633426-69648902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.30566682545	2	583.305667	1164.59678	1.4632	0.00085352	-2.2607	-0.0013187	-0.79744	-0.00046515	583.3046954802792	36.107	0.16874	36.108	36.084	36.253	0.0011024	1200	55	0.89836043	0.033093095	0.896841	364.08572	0	13.411926						200	8	3	NaN	NaN	NaN	0.17818	1	14774	14774		26.732	11.556	1	19006			16139	1816	9394	9585	12739	12739					0.021066198569769767
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.89955045083326	3	466.89955	1397.67682	1.1124	0.00051938	-1.8685	-0.0008724	-0.7561	-0.00035302	466.89840505632077	24.816	0.14479	24.816	24.791	24.936	0	1407	64	0.77102906	0.038895845	0.77102906	467.80234	0	23.59909						262	7	4	NaN	NaN	NaN	0.2088	1	20049	20049		29.509	15.333	1	43949			16140	529	9395	9586	12740	12740					-0.006109385398303857
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.84568744295	2	699.845687	1397.67682	1.0618	0.00074309	-0.70147	-0.00049092	0.36031	0.00025216	699.8450186778853	24.816	0.14479	24.816	24.791	24.936	0	1035	67	0.99917877	0.040212214	0.99917877	404.15378	0	16.26529						254	7	3	NaN	NaN	NaN	0.12632	1	20050	20050		41.017	21.68	1	30466			16141	529	9395	9586	12741	12741					-0.006109385398303857
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.89955045083326	3	466.89955	1397.67682	0.51606	0.00024095	-0.20534	-9.5872E-05	0.31072	0.00014508	466.89915866203194	24.888	0.21713	24.875	24.827	25.044	-0.012394	1404	67	0.77288127	0.040754676	0.7713618	468.92612	0	24.726868						323	10	4	NaN	NaN	NaN	0.2088	1	19105	19105		29.509	14.55	1	44155			16142	529	9395	9586	12742	12742					-0.006109385398303857
LYIGWDKHYGF	11	Unmodified	_LYIGWDKHYGF_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.84568744295	2	699.845687	1397.67682	0.96567	0.00067582	-0.0011933	-8.3509E-07	0.96448	0.00067499	699.844746916896	24.888	0.1689	24.875	24.827	24.996	-0.012394	1041	64	0.9955231	0.038386524	0.99400365	402.6751	0	15.526794						324	8	4	NaN	NaN	NaN	0.51337	1	19106	19106		19.336	3.8738	1	30411			16143	529	9395	9586	12743	12743					-0.006109385398303857
LYIKLFEKN	9	Unmodified	_LYIKLFEKN_					0	0	0			REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.89725835353335	3	389.897258	1166.66995	1.9695	0.00076789	-10.616	-0.0041391	-8.6463	-0.0033712	389.89317633397735	19.012	0.33594	19.012	18.94	19.276	0	1458	67	0.7395112	0.040829897	0.7395112	449.5476	0	24.820404						648	15	5	NaN	NaN	NaN	0.060816	1	15380	15380		31.198	5.5167	1	267310	+		16144	13393	9396	9587	12744	12744					0.09327748579607942
LYIKLFEKN	9	Unmodified						0	0	0			REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	REV__tr|U7SHF3|U7SHF3_FUSNUSAPdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02294PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	389.897258	1166.66995	1.9695	0.00076789	-10.616	-0.0041391	-8.6463	-0.0033712	389.89317633397735	19.012	0.33594	19.012	18.94	19.276	0	1458	67	0.7395112	0.040829897	0.7395112	449.5476		24.820404	0	0	0	NaN	31.198	648	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267310	+		16145	13393	9396	9587							0.09327748579607942
LYIMIKKEC	9	Carbamidomethyl (C),Oxidation (M)	_LYIM(Oxidation (M))IKKEC(Carbamidomethyl (C))_	LYIMIKKEC(1)	LYIM(1)IKKEC	LYIMIKKEC(53)	LYIM(53)IKKEC	0	1	1			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3196023301501	2	607.319602	1212.62465	1.0456	0.00063504	-7.9864	-0.0048503	-6.9408	-0.0042153	607.3150423088147	32.659	0.14482	32.659	32.611	32.756	0	1167	73	0.91857195	0.044062257	0.91857195	372.1044	0	17.849182						266	7	4	NaN	NaN	NaN	0.03623	1	16799	16799		52.758	13.84	1	49968	+		16146	12974	9397	9588	12745	12745	9	656			0.026844387306027784
LYIMIKKEC	9	Carbamidomethyl (C),Oxidation (M)						0	1	1			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	607.319602	1212.62465	1.0456	0.00063504	-7.9864	-0.0048503	-6.9408	-0.0042153	607.3150423088147	32.659	0.14482	32.659	32.611	32.756	0	1167	73	0.91857195	0.044062257	0.91857195	372.1044		17.849182	0.0020926	0.00032594	0.00075972	NaN	52.758	266	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49968	+		16147	12974	9397	9588			9	656			0.026844387306027784
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3653984298	2	677.365398	1352.71624	0.68968	0.00046717	-2.2328	-0.0015125	-1.5432	-0.0010453	677.3639780944596	31.332	0.31374	31.332	31.163	31.477	0	1074	79	0.9754029	0.047595322	0.9754029	394.6652	0	19.257904						408	14	3	NaN	NaN	NaN	0.2084	1	19578	19578		29.547	4.5856	1	61949			16148	1143	9398	9589	12746	12746					0.05399445419379845
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3653984298	2	677.365398	1352.71624	0.64591	0.00043751	-1.2108	-0.00082017	-0.56492	-0.00038265	677.8670305266271	31.525	0.096563	31.525	31.501	31.597	0	1074	46	0.9754029	0.027448475	0.9754029	394.6652	0	11.10614						92	5	2	NaN	NaN	NaN	0.3317	1	19579	19579		24.493	9.0307	1	7990			16149	1143	9398	9589	12747	12747					0.05399445419379845
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3653984298	2	677.365398	1352.71624	1.5042	0.0010189	-1.7098	-0.0011582	-0.20564	-0.00013929	677.3645866732027	30.656	0.26548	30.656	30.56	30.825	0	1071	112	0.977233	0.067742765	0.977233	395.4057	0	27.409912						865	12	7	NaN	NaN	NaN	2.2953E-22	1	19580	19580		144.73	72.741	1	580970			16150	1143	9398	9589	12748	12748					0.05399445419379845
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3653984298	2	677.365398	1352.71624	0.92657	0.00062763	-8.4009	-0.0056904	-7.4743	-0.0050628	677.3594970448622	31.114	0.12067	31.109	31.06	31.181	-0.0050716	1065	94	0.9808926	0.05675745	0.97937316	396.88644	0	22.965057						374	6	3	NaN	NaN	NaN	0.40068	1	18699	18699		22.026	2.1221	1	47982			16151	1143	9398	9589	12749	12749					0.05399445419379845
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3653984298	2	677.365398	1352.71624	0.51419	0.00034829	-3.4171	-0.0023146	-2.9029	-0.0019663	677.362619786315	31.427	0.16896	31.423	31.423	31.592	-0.0044155	1071	49	0.977233	0.029276788	0.97571355	395.4057	0	11.845886						268	8	3	NaN	NaN	NaN	0.076425	1	18700	18700		43.133	18.739	1	36245			16152	1143	9398	9589	12750	12750					0.05399445419379845
LYINMKSLVSW	11	Unmodified	_LYINMKSLVSW_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3653984298	2	677.365398	1352.71624	1.5692	0.0010629	-2.3425	-0.0015867	-0.77323	-0.00052376	677.3645897422676	30.703	0.36195	30.698	30.577	30.939	-0.0057564	1068	112	0.97906286	0.06773543	0.9775434	396.14612	0	27.406952						1089	16	6	NaN	NaN	NaN	5.357E-12	1	18701	18701		114.78	50.79	1	657560			16153	1143	9398	9589	12751	12751					0.05399445419379845
LYINMKSLVSW	11	Unmodified						0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.365398	1352.71624	0.75478	0.00051126	-3.424	-0.0023193	-2.6692	-0.001808	677.3634991687749	31.307	0.16893	31.302	31.205	31.374	-0.0050716	1071	55	0.977233	0.032932818	0.97571355	395.4057		13.325195	-0.11164	-0.00030324	0.00015533	NaN	24.493	322	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58418			16154	1143	9398	9589							0.05399445419379845
LYINMKSLVSW	11	Unmodified						0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.365398	1352.71624	1.0236	0.00069336	-3.3196	-0.0022486	-2.296	-0.0015552	677.3637608939174	31.017	0.12071	31.012	30.988	31.109	-0.0050716	1068	58	0.97906286	0.034775555	0.9775434	396.14612		14.070831	0.17793	-0.0018606	0.00015523	NaN	144.73	107	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11896			16155	1143	9398	9589							0.05399445419379845
LYINMKSLVSW	11	Oxidation (M)	_LYINM(Oxidation (M))KSLVSW_		LYINM(1)KSLVSW		LYINM(140)KSLVSW	0	0	1		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.36285574085	2	685.362856	1368.71116	2.9176	0.0019996	-1.5948	-0.001093	1.3228	0.00090658	685.3624861741184	26.336	0.31374	26.336	26.239	26.553	0	1068	121	0.97906286	0.07323152	0.97906286	396.09927	0	29.627258						1162	14	6	NaN	NaN	NaN	1.844E-18	1	19790	19790		138.37	54.844	1	1043800			16156	1143	9398	9590	12752	12752		124			0.04155141556771014
LYINMKSLVSW	11	Oxidation (M)	_LYINM(Oxidation (M))KSLVSW_		LYINM(1)KSLVSW		LYINM(150)KSLVSW	0	0	1		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.36285574085	2	685.362856	1368.71116	2.5796	0.001768	-0.86296	-0.00059144	1.7166	0.0011765	685.3633667711035	26.36	0.41017	26.349	26.18	26.59	-0.011135	1068	112	0.97906286	0.06771362	0.9775434	396.09927	0	27.394867						1375	18	6	NaN	NaN	NaN	1.7179999999999999E-22	1	18864	18864		147.08	63.555	1	1074700			16157	1143	9398	9590	12753	12753		124			0.04155141556771014
LYIPIFSTF	9	Unmodified	_LYIPIFSTF_					0	0	0		nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	nc|ENSG00000150712|Q9C0I1-2|MTMR12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.6026602007998	1	1100.60266	1099.59538	1.9679	0.0021659	-0.62749	-0.00069062	1.3404	0.0014752	1101.6054521798885	38.874	0.096107	38.879	38.807	38.903	0.0046844	60	46	1.582944	0.02647829	1.5814246	320.9917	0	5.369293						95	5	2	NaN	NaN	NaN	0.014943	1	12506	12506		78.398	25.64	1	7497.2			16158	3712	9399	9591	12754	12754					0.04956985768217237
LYIQSHYQL	9	Unmodified	_LYIQSHYQL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8060309662001	2	582.806031	1163.59751	1.9824	0.0011554	-1.9156	-0.0011164	0.066789	3.8925E-05	583.3054842611966	21.778	0.19265	21.778	21.705	21.898	0	1170	73	0.91673553	0.044071734	0.91673553	371.5365	0	17.861511						193	9	3	NaN	NaN	NaN	0.25448	1	15276	15276		21.835	5.2508	1	16769			16159	5844	9400	9592	12755	12755					0.02225414506051493
LYIQTDHLF	9	Unmodified	_LYIQTDHLF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.30058144755	2	575.300581	1148.58661	2.0523	0.0011807	-3.4512	-0.0019855	-1.3989	-0.00080478	575.2979548909062	26.046	0.096571	26.046	26.022	26.119	0	1146	85	0.93142134	0.051417053	0.93142134	377.54617	0	20.841614						172	5	3	NaN	NaN	NaN	0.10363	1	14761	14761		35.296	5.6982	1	18408			16160	3113	9401	9593	12756	12756					0.018260121317553057
LYIQTDHLF	9	Unmodified	_LYIQTDHLF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.30058144755	2	575.300581	1148.58661	1.8523	0.0010656	-1.9941	-0.0011472	-0.14186	-8.1611E-05	575.2990914336712	26.07	0.072409	26.059	26.035	26.107	-0.011137	1146	76	0.93142134	0.045900643	0.9299019	377.54617	0	18.60556						185	4	3	NaN	NaN	NaN	0.14787	1	14261	14261		28.896	13.72	1	19763			16161	3113	9401	9593	12757	12757					0.018260121317553057
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.83478840565	2	648.834788	1295.65502	1.9763	0.0012823	-2.3427	-0.00152	-0.36636	-0.00023771	648.8331774410863	29.86	0.24133	29.86	29.787	30.029	0	1107	88	0.9552588	0.05312431	0.9552588	386.68668	0	21.504608						391	11	5	NaN	NaN	NaN	0.007016	1	18701	18701		75.089	41.664	1	94752			16162	3113	9402	9594	12758	12758					0.019022567116053324
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.83478840565	2	648.834788	1295.65502	1.2108	0.0007856	-2.0325	-0.0013188	-0.82174	-0.00053317	648.8332877581086	29.883	0.33782	29.876	29.803	30.141	-0.0070667	1104	79	0.9570911	0.04762101	0.95557165	387.42838	0	19.276855						453	15	5	NaN	NaN	NaN	1.184E-08	1	17864	17864		134.97	71.015	1	99083			16163	3113	9402	9594	12759	12759					0.019022567116053324
LYIRKEYLI	9	Unmodified	_LYIRKEYLI_					0	0	0			REV__CON__P06868	REV__CON__P06868	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.86334887985	2	605.863349	1209.71214	0.73964	0.00044812	-9.4174	-0.0057057	-8.6778	-0.0052576	605.8580246467927	28.604	0.072355	28.596	28.572	28.644	-0.0083504	1152	52	0.92775106	0.031198978	0.9262317	375.83298	0	12.638733						99	4	3	NaN	NaN	NaN	0.51576	1	16053	16053		8.962	0.68444	1	13770	+	+	16164	8262	9403	9595	12760	12760					0.11567723987991485
LYIRKEYLI	9	Unmodified						0	0	0			REV__CON__P06868	REV__CON__P06868	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.863349	1209.71214	1.2748	0.00077235	-9.9809	-0.0060471	-8.7061	-0.0052747	605.8568495890922	28.605	0.096546	28.605	28.556	28.653	0	1152	46	0.92775106	0.027531445	0.92775106	375.83298		11.153046	0.0045503	-0.00022798	0.00075972	NaN	8.962	121	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17132	+	+	16165	8262	9403	9595							0.11567723987991485
LYIRKEYLI	9	Unmodified						0	0	0			REV__CON__P06868	REV__CON__P06868	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	605.863349	1209.71214	0.73964	0.00044812	-9.4174	-0.0057057	-8.6778	-0.0052576	605.8580246467927	28.604	0.072355	28.596	28.572	28.644	-0.0083504	1152	52	0.92775106	0.031198978	0.9262317	375.83298		12.638733	-0.0045503	0.0004548	-0.00075972	NaN	8.962	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13770	+	+	16166	8262	9403	9595							0.11567723987991485
LYIRLDGIFL	10	Unmodified	_LYIRLDGIFL_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.86334887985	2	611.863349	1221.71214	0.35734	0.00021865	-3.8165	-0.0023352	-3.4592	-0.0021165	611.8611625760262	33.504	0.12052	33.504	33.48	33.6	0	1125	49	0.9442611	0.029333651	0.9442611	382.4788	0	11.881775						208	6	3	NaN	NaN	NaN	0.24484	1	17028	17028		31.675	16.213	1	29309			16167	347	9404	9596	12761	12761					0.11015723987975434
LYIRLDGIFL	10	Unmodified	_LYIRLDGIFL_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22;ENSG00000006555|ENST00000371276|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.86334887985	2	611.863349	1221.71214	0.081752	5.0021E-05	-2.7682	-0.0016938	-2.6865	-0.0016438	611.862084766608	33.551	0.19305	33.549	33.501	33.694	-0.0018463	1125	49	0.9442611	0.029330492	0.94274163	382.47876	0	11.880493						239	9	3	NaN	NaN	NaN	0.5544	1	16337	16337		17.198	7.5868	1	26714			16168	347	9404	9596	12762	12762					0.11015723987975434
LYISEVRNI	9	Unmodified	_LYISEVRNI_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8138559983	2	553.813856	1105.61316	1.4102	0.00078099	0.15908	8.8102E-05	1.5693	0.00086909	553.8138810361494	22.163	0.16887	22.163	22.115	22.284	0	1176	76	0.9130621	0.045945227	0.9130621	370.27496	0	18.632233						213	8	3	NaN	NaN	NaN	0.01452	1	13100	13100		79.199	12.045	1	30614			16169	3759;7960	9405	9597	12763	12763					0.06457701023077789
LYISGIVVSFL	11	Unmodified	_LYISGIVVSFL_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.8577321857001	2	605.857732	1209.70091	1.2748	0.00077235	-0.71035	-0.00043037	0.56445	0.00034198	605.8568495890922	28.605	0.096546	28.605	28.556	28.653	0	1152	46	0.92775106	0.027531445	0.92775106	375.83298	0	11.153046						121	5	4	NaN	NaN	NaN	0.6085	1	16727	16727		13.463	0.36188	1	17132	+		16170	10612	9406	9598	12764	12764					0.10444901893856695
LYITGNGV	8	Unmodified	_LYITGNGV_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.4512449367002	1	836.451245	835.443968	1.0424	0.00087195	3.5839	0.0029977	4.6263	0.0038697	836.4530507267316	33.721	0.048286	33.721	33.697	33.745	0	423	37	1.3679651	0.021455288	1.3679651	278.48297	0	4.367737						57	3	2	NaN	NaN	NaN	0.35353	1	5206	5206		38.918	2.8816	1	4430.6			16171	4633	9407	9599	12765	12765					0.019664244603859515
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.82316108685	2	508.823161	1015.63177	0.92212	0.00046919	-0.31848	-0.00016205	0.60364	0.00030714	508.82265275864233	38.011	0.12013	38.011	37.987	38.107	0	1254	40	0.8652351	0.023948371	0.8652351	351.2621	0	9.722412						148	6	3	NaN	NaN	NaN	0.021781	1	9218	9218		69.745	22.704	1	18425			16172	3422	9408	9600	12766	12766					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.6390457071001	1	1016.63905	1015.63177	1.6658	0.0016935	0.22495	0.0002287	1.8908	0.0019222	1016.6390628111019	38.035	0.26434	38.035	37.963	38.227	0	75	151	1.5741152	0.088415265	1.5741152	319.52835	0	17.947357						699	12	4	NaN	NaN	NaN	0.00080915	1	9219	9219		114.61	38.344	1	132260			16173	3422	9408	9600	12767	12767					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.82316108685	2	508.823161	1015.63177	1.3095	0.0006663	-1.3726	-0.00069842	-0.063132	-3.2123E-05	508.82214859903075	38.033	0.09613	38.036	37.988	38.084	0.0034256	1251	37	0.8670771	0.022102654	0.8655577	352.0099	0	8.9730835						109	5	3	NaN	NaN	NaN	0.042649	1	9045	9045		50.033	2.9924	1	11948			16174	3422	9408	9600	12768	12768					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.6390457071001	1	1016.63905	1015.63177	2.0687	0.0021031	-0.84706	-0.00086115	1.2216	0.0012419	1016.6379193843987	38.009	0.24037	38.012	37.964	38.204	0.0034256	75	154	1.5741152	0.090188384	1.5725957	319.52835	0	18.307251						661	11	4	NaN	NaN	NaN	0.00080915	1	9046	9046		114.61	38.344	1	121230			16175	3422	9408	9600	12769	12769					0.12457862664939512
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.33389294865	2	561.333893	1120.65323	1.6928	0.00095023	-2.6323	-0.0014776	-0.93952	-0.00052739	561.3323799955671	28.87	0.16893	28.87	28.822	28.991	0	1206	49	0.894683	0.029419243	0.894683	362.76172	0	11.928467						254	8	4	NaN	NaN	NaN	0.059222	1	13723	13723		42.995	2.841	1	69220			16176	1115	9409	9601	12770	12770					0.09773247693647136
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.33389294865	2	561.333893	1120.65323	1.2056	0.00067672	-1.6073	-0.00090223	-0.40173	-0.0002255	561.3330413866066	28.869	0.16895	28.861	28.837	29.006	-0.0083504	1206	46	0.894683	0.02757907	0.89316356	362.76172	0	11.182312						215	8	4	NaN	NaN	NaN	0.048656	1	13316	13316		47.482	17.883	1	67946			16177	1115	9409	9601	12771	12771					0.09773247693647136
LYIVHPTMF	9	Unmodified	_LYIVHPTMF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.79662037285	2	560.79662	1119.57869	2.0735	0.0011628	3.4745	0.0019485	5.5479	0.0031113	560.7978532800148	26.505	0.21721	26.505	26.456	26.674	0	1194	91	0.902037	0.055125415	0.902037	365.74774	0	22.351624						436	10	5	NaN	NaN	NaN	9.8813E-12	1	13656	13656		144.54	91.219	1	145840			16178	4987	9410	9602	12772	12772					0.02368161610615971
LYIVHPTMF	9	Unmodified	_LYIVHPTMF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.79662037285	2	560.79662	1119.57869	1.5606	0.0008752	2.782	0.0015601	4.3426	0.0024353	560.7974369584557	26.529	0.21716	26.518	26.47	26.687	-0.010645	1194	88	0.902037	0.053285003	0.9005176	365.74774	0	21.605408						455	10	4	NaN	NaN	NaN	0.00080915	1	13259	13259		114.61	51.297	1	166310			16179	4987	9410	9602	12773	12773					0.02368161610615971
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(110)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7940776839	2	568.794078	1135.5736	2.1972	0.0012498	-2.385	-0.0013566	-0.1878	-0.00010682	568.7929384641985	23.586	0.14458	23.586	23.465	23.61	0	1209	73	0.892844	0.0441432	0.892844	361.95825	0	17.89563						312	7	5	NaN	NaN	NaN	0.002833	1	14300	14300		108.51	66.725	1	135910			16180	4987	9410	9603	12774	12774		522			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(140)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7940776839	2	568.794078	1135.5736	1.8218	0.0010362	-1.5019	-0.00085427	0.31987	0.00018194	568.7931798850061	23.609	0.12056	23.596	23.5	23.621	-0.013048	1206	70	0.894683	0.042301655	0.89316356	362.7038	0	17.149048						271	6	4	NaN	NaN	NaN	1.433E-07	1	13833	13833		136.23	98.929	1	134900			16181	4987	9410	9603	12775	12775		522			0.011238577480071399
LYIWTNRAQFG	11	Unmodified	_LYIWTNRAQFG_					0	0	0		ENST00000275015.9_2_6:44229524-44230376:-|nuORF	ENST00000275015.9_2_6:44229524-44230376:-|nuORF	ENST00000275015.9_2_6:44229524-44230376:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.85658648025	2	684.856586	1367.69862	1.2767	0.00087434	-8.0156	-0.0054895	-6.7389	-0.0046152	684.8508880664327	28.097	0.21724	28.088	28.016	28.233	-0.0089798	1062	82	0.9827221	0.04937005	0.98120266	397.58264	0	19.973755						296	10	4	NaN	NaN	NaN	0.7072	1	18849	18849		6.9844	0.55443	1	36603			16182	6349	9411	9604	12776	12776					0.02947866208751293
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.3293388870001	2	629.329339	1256.64412	0.93251	0.00058686	-2.3915	-0.0015051	-1.459	-0.00091821	629.3278680173559	31.332	0.26547	31.332	31.284	31.549	0	1128	55	0.9424274	0.03300035	0.9424274	381.61746	0	13.362854						368	12	5	NaN	NaN	NaN	0.050502	1	17930	17930		52.78	26.665	1	88943			16183	2092	9412	9605	12777	12777					0.026068543373185094
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.3293388870001	2	629.329339	1256.64412	0.92021	0.00057912	-1.9564	-0.0012312	-1.0362	-0.00065211	629.3279303383498	31.331	0.19304	31.326	31.277	31.47	-0.0050716	1125	55	0.9442611	0.032996833	0.94274163	382.35995	0	13.361389						346	9	4	NaN	NaN	NaN	0.00031519	1	17161	17161		96.341	54.023	1	106700			16184	2092	9412	9605	12778	12778					0.026068543373185094
LYKDDTISI	9	Unmodified	_LYKDDTISI_					0	0	0			REV__ENST00000548760.2_1_12:98908385-98908424:-|nuORF	REV__ENST00000548760.2_1_12:98908385-98908424:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2845970323501	2	534.284597	1066.55464	1.5393	0.00082241	-10.285	-0.0054953	-8.7461	-0.0046729	534.2778426264521	23.73	0.24098	23.717	23.524	23.765	-0.013048	1266	100	0.85786515	0.060792148	0.8563457	348.04773	0	24.664185						515	11	4	NaN	NaN	NaN	0.16939	1	11140	11140		27.296	3.9618	1	119960	+		16185	12728	9413	9606	12779	12779					0.024025996579666753
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2949647534001	2	581.294965	1160.57538	1.7896	0.0010403	-4.0476	-0.0023528	-2.258	-0.0013126	581.2925480076213	24.671	0.193	24.671	24.598	24.791	0	1194	97	0.902037	0.058806837	0.902037	365.5906	0	23.834076						457	9	4	NaN	NaN	NaN	0.041983	1	15165	15165		50.315	16.89	1	76405			16186	2714	9414	9607	12780	12780					0.001511900376272024
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2949647534001	2	581.294965	1160.57538	1.4808	0.00086076	-4.4166	-0.0025674	-2.9359	-0.0017066	581.2926940172673	24.695	0.28947	24.682	24.538	24.827	-0.012392	1194	97	0.902037	0.058813155	0.9005176	365.5906	0	23.83664						548	13	4	NaN	NaN	NaN	0.028569	1	14650	14650		60.984	22.853	1	84566			16187	2714	9414	9607	12781	12781					0.001511900376272024
LYKEPKKMM	9	Unmodified	_LYKEPKKMM_					0	0	0			REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.88033393949996	3	389.880334	1166.61917	1.5513	0.0006048	-7.7063	-0.0030045	-6.1551	-0.0023997	389.8769884821466	13.373	0.096055	13.373	13.349	13.445	0	1482	52	0.72465914	0.031579494	0.72465914	440.5193	0	19.197113						148	5	3	NaN	NaN	NaN	0.31737	1	15368	15368		11.739	0	1	18298	+		16188	12544	9415	9608	12782	12782					0.042527599387312875
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2714896571	2	560.27149	1118.52843	1.7521	0.00098167	-1.1049	-0.00061905	0.64722	0.00036262	560.2708594087926	23.272	0.096489	23.258	23.234	23.331	-0.013294	1236	73	0.876284	0.044176638	0.8747646	355.30978	0	17.912445						126	5	2	NaN	NaN	NaN	0.2961	1	13206	13206		19.164	3.7009	1	43821			16189	5019	9416	9609	12783	12783					-0.02609669513526569
LYKHFLSL	8	Unmodified	_LYKHFLSL_					0	0	0		ENSG00000186666|ENST00000333924|BCDIN3D	ENSG00000186666|ENST00000333924|BCDIN3D	ENSG00000186666|ENST00000333924|BCDIN3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5876788386003	1	1020.58768	1019.5804	1.7016	0.0017366	8.2653	0.0084355	9.9669	0.010172	1020.5952617911377	35.217	0.16888	35.217	35.192	35.361	0	93	142	1.5635144	0.083176374	1.5635144	317.36002	0	16.883057						501	8	3	NaN	NaN	NaN	0.6053	1	9357	9357		24.961	4.4056	1	73510			16190	5483	9417	9610	12784	12784					0.07139538690910285
LYKMLSENF	9	Oxidation (M)	_LYKM(Oxidation (M))LSENF_		LYKM(1)LSENF		LYKM(45)LSENF	0	0	1		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.78644961705	2	580.78645	1159.55835	1.5654	0.00090916	-1.6297	-0.00094651	-0.064302	-3.7346E-05	580.7864005988438	19.972	0.21662	19.958	19.837	20.054	-0.014141	1203	61	0.8965218	0.036782026	0.89500237	363.35904	0	14.907715						227	10	3	NaN	NaN	NaN	0.054111	1	14614	14614		45.165	9.8684	1	32443			16191	5456	9418	9611	12785	12785		567			-0.015050538398327262
LYKPDSNEF	9	Unmodified	_LYKPDSNEF_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.7665714547	2	556.766571	1111.51859	1.9993	0.0011132	-2.7863	-0.0015513	-0.78695	-0.00043814	556.7656652585299	18.005	0.19188	18.005	17.957	18.149	0	1260	85	0.8615505	0.05157286	0.8615505	349.36258	0	20.913025						358	9	5	NaN	NaN	NaN	0.084037	1	13335	13335		38.131	17.682	1	60782			16192	5226	9419	9612	12786	12786					-0.03270857518896264
LYKPDSNEF	9	Unmodified	_LYKPDSNEF_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.7665714547	2	556.766571	1111.51859	1.978	0.0011013	-1.4347	-0.0007988	0.54329	0.00030248	556.7657324213825	18.026	0.16802	18.012	17.964	18.132	-0.013786	1260	43	0.8615505	0.025797546	0.8600311	349.36258	0	10.461029						179	8	2	NaN	NaN	NaN	0.017558	1	12958	12958		75.089	35.63	1	53414			16193	5226	9419	9612	12787	12787					-0.03270857518896264
LYKQGMLTI	9	Unmodified	_LYKQGMLTI_					0	0	0			REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.8019027160001	2	533.801903	1065.58925	1.6877	0.00090089	5.1187	0.0027324	6.8064	0.0036333	533.8044943484146	20.838	0.24074	20.838	20.79	21.031	0	1479	40	0.72651637	0.024143755	0.72651637	294.76105	0	9.795563						223	11	3	NaN	NaN	NaN	0.58159	1	11376	11376		6.2502	0.78436	1	39081	+		16194	8859	9420	9613	12788	12788					0.05908144265072224
LYKQGMLTI	9	Unmodified						0	0	0			REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	533.801903	1065.58925	1.6877	0.00090089	5.1187	0.0027324	6.8064	0.0036333	533.8044943484146	20.838	0.24074	20.838	20.79	21.031	0	1479	40	0.72651637	0.024143755	0.72651637	294.76105		9.795563	-0.10143	-0.0011362	0.00075972	NaN	6.2502	223	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39081	+		16195	8859	9420	9613							0.05908144265072224
LYKRYPSLW	9	Unmodified	_LYKRYPSLW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.34004095905	2	613.340041	1224.66553	0.75652	0.00046401	-2.5272	-0.0015501	-1.7707	-0.001086	613.3384337690472	20.718	0.14465	20.718	20.646	20.79	0	1113	34	0.9515937	0.02016145	0.9515937	385.4385	0	8.16629						99	7	3	NaN	NaN	NaN	0.097143	1	17103	17103		36.235	4.5594	1	8404.2			16196	1176	9421	9614	12789	12789					0.062182841566936986
LYKTIFEGF	9	Unmodified	_LYKTIFEGF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.3000501313002	2	559.30005	1116.58555	1.2452	0.00069644	-2.1104	-0.0011804	-0.86523	-0.00048393	559.7990242907127	27.06	0.072453	27.06	27.036	27.109	0	1206	37	0.894683	0.022066832	0.894683	362.77777	0	8.947723						57	4	2	NaN	NaN	NaN	0.23499	1	13539	13539		23.086	10.083	1	11090			16197	2070	9422	9615	12790	12790					0.031917977628836525
LYKTVNGELF	10	Unmodified	_LYKTVNGELF_					0	0	0			REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3215138549001	2	592.321514	1182.62847	1.3358	0.0007912	0.015962	9.4548E-06	1.3517	0.00080065	592.3238598499432	24.743	0.12064	24.743	24.695	24.816	0	1158	70	0.92408	0.04223311	0.92408	374.44247	0	17.113129						234	6	3	NaN	NaN	NaN	0.1159	1	15935	15935		43.776	13.165	1	43747	+		16198	13633	9423	9616	12791	12791					0.04446567820286873
LYKTVNGELF	10	Unmodified						0	0	0			REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.321514	1182.62847	1.3358	0.0007912	0.015962	9.4548E-06	1.3517	0.00080065	592.3238598499432	24.743	0.12064	24.743	24.695	24.816	0	1158	70	0.92408	0.04223311	0.92408	374.44247		17.113129	-0.078167	-0.001469	0.0035138	NaN	43.776	234	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43747	+		16199	13633	9423	9616							0.04446567820286873
LYKTVNGELF	10	Unmodified						0	0	0			REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	REV__tr|U7T745|U7T745_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00111PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.321514	1182.62847	1.0637	0.00063003	2.2913	0.0013572	3.355	0.0019872	592.3239588299978	24.912	0.12064	24.9	24.851	24.972	-0.012392	1167	64	0.91857195	0.03856069	0.9170525	372.21054		15.625	0.078167	0.0012264	-0.0035138	NaN	43.776	199	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50520	+		16200	13633	9423	9616							0.04446567820286873
LYLAFPLAF	9	Unmodified	_LYLAFPLAF_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5971808924	1	1054.59718	1053.5899	1.376	0.0014511	-0.32887	-0.00034683	1.0471	0.0011043	1054.5971133932014	40.488	0.12021	40.488	40.44	40.561	0	60	67	1.582944	0.038849115	1.582944	321.1654	0	7.8821716						111	6	2	NaN	NaN	NaN	0.033463	1	10815	10815		54.579	9.9464	1	7100.3			16201	4834	9424	9617	12792	12792					0.06525306976436696
LYLAFPLAF	9	Unmodified	_LYLAFPLAF_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5971808924	1	1054.59718	1053.5899	1.698	0.0017907	-0.24912	-0.00026272	1.4489	0.001528	1054.596817002233	40.438	0.07206	40.445	40.421	40.493	0.0067558	57	46	1.5847093	0.026481032	1.5831898	321.52356	0	5.372772						71	4	2	NaN	NaN	NaN	0.024982	1	10589	10589		65.676	21.044	1	4662.1			16202	4834	9424	9617	12793	12793					0.06525306976436696
LYLAHSWEEIL	11	Unmodified	_LYLAHSWEEIL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3586276427001	2	687.358628	1372.7027	2.5775	0.0017717	-0.084899	-5.8356E-05	2.4926	0.0017133	687.3591846782895	25.25	0.19304	25.25	25.202	25.395	0	1071	103	0.977233	0.062219977	0.977233	395.34744	0	25.1716						715	9	6	NaN	NaN	NaN	0.068415	1	19828	19828		45.165	13.967	1	403500	+		16203	10939	9425	9618	12794	12794					0.03125910911808205
LYLAHSWEEIL	11	Unmodified	_LYLAHSWEEIL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3586276427001	2	687.358628	1372.7027	2.3176	0.001593	0.58168	0.00039982	2.8993	0.0019929	687.3596503393308	25.274	0.31363	25.262	25.141	25.455	-0.012011	1071	100	0.977233	0.06039965	0.97571355	395.34744	0	24.43518						864	14	6	NaN	NaN	NaN	0.18551	1	18895	18895		31.675	3.3798	1	398140	+		16204	10939	9425	9618	12795	12795					0.03125910911808205
LYLAHSWEEIL	11	Unmodified						0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	687.358628	1372.7027	2.5775	0.0017717	-0.084899	-5.8356E-05	2.4926	0.0017133	687.3591846782895	25.25	0.19304	25.25	25.202	25.395	0	1071	103	0.977233	0.062219977	0.977233	395.34744		25.1716	-0.0059383	-0.00063672	0.00075972	NaN	45.165	715	9	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403500	+		16205	10939	9425	9618							0.03125910911808205
LYLAHSWEEIL	11	Unmodified						0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	687.358628	1372.7027	2.3176	0.001593	0.58168	0.00039982	2.8993	0.0019929	687.3596503393308	25.274	0.31363	25.262	25.141	25.455	-0.012011	1071	100	0.977233	0.06039965	0.97571355	395.34744		24.43518	0.0059383	0.00027964	-0.00075972	NaN	45.165	864	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398140	+		16206	10939	9425	9618							0.03125910911808205
LYLAHVFYV	9	Unmodified	_LYLAHVFYV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.81058502785	2	562.810585	1123.60662	1.944	0.0010941	-1.4898	-0.00083849	0.45416	0.0002556	562.8098179651303	28.605	0.072399	28.605	28.556	28.629	0	1155	58	0.92591566	0.034880698	0.92591566	375.41345	0	14.142426						221	4	4	NaN	NaN	NaN	0.010172	1	13837	13837		92.036	56.291	1	93058			16207	3781	9426	9619	12796	12796					0.049758078623654
LYLAHVFYV	9	Unmodified	_LYLAHVFYV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.81058502785	2	562.810585	1123.60662	1.2163	0.00068455	-1.214	-0.00068326	0.002295	1.2917E-06	563.3114278699426	28.628	0.14475	28.62	28.572	28.716	-0.0083504	1152	100	0.92775106	0.060615063	0.9262317	376.15762	0	24.576416						236	7	3	NaN	NaN	NaN	0.010172	1	13409	13409		92.036	56.291	1	74202			16208	3781	9426	9619	12797	12797					0.049758078623654
LYLAIGGGIL	10	Unmodified	_LYLAIGGGIL_					0	0	0			REV__nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	REV__nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.6029945518002	1	989.602995	988.595718	1.4247	0.0014098	-0.26399	-0.00026125	1.1607	0.0011486	989.6019166256826	31.597	0.14483	31.597	31.573	31.718	0	144	76	1.533442	0.04428029	1.533442	311.38614	0	8.991699						232	7	4	NaN	NaN	NaN	0.39397	1	8174	8174		23.85	1.7241	1	37590	+		16209	9250	9427	9620	12798	12798					0.10096405488093296
LYLAMLERF	9	Unmodified	_LYLAMLERF_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3151772667501	2	578.315177	1154.6158	1.9762	0.0011429	0.33872	0.00019589	2.315	0.0013388	578.3154816327439	30.077	0.096579	30.077	30.053	30.149	0	1149	61	0.92958635	0.036714554	0.92958635	376.779	0	14.8811035						152	5	3	NaN	NaN	NaN	0.030696	1	14980	14980		58.2	21.613	1	13052			16210	4649	9428	9621	12799	12799					0.04467833156400047
LYLAMLERF	9	Unmodified						0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.315177	1154.6158	1.0544	0.00060978	1.8417	0.0010651	2.8961	0.0016749	578.3161678021926	30.076	0.16895	30.07	30.045	30.214	-0.0064087	1146	61	0.93142134	0.036714554	0.9299019	377.52277		14.881134	-0.0036711	0.00080774	0.0001578	NaN	58.2	194	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12850			16211	4649	9428	9621							0.04467833156400047
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7691141436501	2	530.769114	1059.52368	1.792	0.00095115	-1.7291	-0.00091778	0.062874	3.3371E-05	530.7680939900761	21.416	0.21684	21.416	21.392	21.609	0	1227	64	0.88180584	0.038648307	0.88180584	357.79102	0	15.6814575						322	10	4	NaN	NaN	NaN	0.018156	1	11059	11059		74.332	0	1	73187			16212	1260	9429	9622	12800	12800					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7691141436501	2	530.769114	1059.52368	1.5788	0.00083799	0.9333	0.00049537	2.5121	0.0013334	530.7679117120292	21.007	0.14438	21.007	20.983	21.127	0	1242	85	0.87260187	0.051584005	0.87260187	354.05652	0	20.930084						228	7	4	NaN	NaN	NaN	0.032764	1	11060	11060		55.494	0	1	48922			16213	1260	9429	9622	12801	12801					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7691141436501	2	530.769114	1059.52368	1.097	0.00058224	-0.81514	-0.00043265	0.28183	0.00014959	530.768508503654	21.44	0.33715	21.426	21.378	21.715	-0.014006	1227	64	0.88180584	0.038648307	0.8802864	357.79102	0	15.6814575						255	15	4	NaN	NaN	NaN	0.025843	1	10825	10825		64.55	0	1	63635			16214	1260	9429	9622	12802	12802					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7691141436501	2	530.769114	1059.52368	0.63223	0.00033557	0.69199	0.00036729	1.3242	0.00070285	530.768977977071	21.007	0.12041	20.993	20.969	21.089	-0.014086	1239	67	0.87444305	0.04051274	0.8729236	354.80356	0	16.437958						184	6	4	NaN	NaN	NaN	0.094712	1	10826	10826		36.586	0	1	44401			16215	1260	9429	9622	12803	12803					-0.0037055365628475556
LYLDNSNILY	10	Unmodified	_LYLDNSNILY_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.8800444735334	3	409.880044	1226.6183	1.2804	0.0005248	1.9129	0.00078406	3.1933	0.0013089	409.88079834638944	21.44	0.14452	21.426	21.378	21.523	-0.014006	1440	37	0.7506418	0.02225393	0.7491224	456.05356	0	13.520416						156	7	4	NaN	NaN	NaN	0.64611	1	16463	16463		6.8076	0	1	15904			16216	5453	9430	9623	12804	12804					0.014059600950758977
LYLDTMQVMKW	11	Oxidation (M)	_LYLDTM(Oxidation (M))QVMKW_		LYLDTM(0.988)QVM(0.012)KW		LYLDTM(19)QVM(-19)KW	0	0	1		ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.354173429	2	722.354173	1442.69379	1.1751	0.00084881	-1.6178	-0.0011686	-0.44269	-0.00031978	722.3536848932428	27.253	0.048241	27.253	27.229	27.277	0	1056	37	0.9863805	0.021945775	0.9863805	398.85507	0	8.874054						71	3	3	NaN	NaN	NaN	0.030127	1	20337	20337		56.466	35.952	2	4745.3			16217	3653	9431	9624	12805	12805		408			-0.009845220405622968
LYLEFLQKF	9	Unmodified	_LYLEFLQKF_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8367997783499	2	600.8368	1199.65905	0.66971	0.00040239	-2.1734	-0.0013059	-1.5037	-0.00090349	600.8353410172944	31.139	0.28959	31.139	31.115	31.404	0	1167	52	0.91857195	0.03121245	0.91857195	372.14963	0	12.645386						218	13	4	NaN	NaN	NaN	0.026469	1	16473	16473		63.731	16.249	1	55959			16218	2059	9432	9625	12806	12806					0.06720346205293026
LYLEFLQKF	9	Unmodified	_LYLEFLQKF_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8367997783499	2	600.8368	1199.65905	0.741	0.00044522	-3.0299	-0.0018205	-2.2889	-0.0013753	600.8352460701884	31.162	0.16891	31.157	31.109	31.277	-0.0050716	1164	43	0.9204082	0.025702953	0.91888875	372.89355	0	10.4133						224	8	4	NaN	NaN	NaN	0.070055	1	15821	15821		40.154	12.858	1	61837			16219	2059	9432	9625	12807	12807					0.06720346205293026
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2820543434	2	578.282054	1154.54956	1.9996	0.0011563	-3.2392	-0.0018732	-1.2396	-0.00071682	578.2798039003256	30.222	0.19306	30.222	30.149	30.342	0	1194	103	0.902037	0.062543035	0.902037	365.613	0	25.349884						389	9	5	NaN	NaN	NaN	0.03618	1	14958	14958		52.78	2.4646	1	79117			16220	871	9433	9626	12808	12808					-0.02153704204670248
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2820543434	2	578.282054	1154.54956	1.1394	0.00065888	-5.0585	-0.0029253	-3.9192	-0.0022664	578.278989328255	30.197	0.19303	30.19	30.166	30.359	-0.0064106	1191	106	0.90387505	0.06437904	0.9023556	366.358	0	26.094055						466	9	4	NaN	NaN	NaN	0.010404	1	14466	14466		91.563	36.07	1	91588			16221	871	9433	9626	12809	12809					-0.02153704204670248
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8160643362501	2	590.816064	1179.61758	0.89669	0.00052978	-3.1922	-0.001886	-2.2955	-0.0013562	590.8155589020708	31.139	0.16889	31.139	31.091	31.259	0	1188	58	0.90571284	0.034907043	0.90571284	367.01077	0	14.1449585						246	8	3	NaN	NaN	NaN	0.026551	1	15819	15819		60.984	37.649	1	73506			16222	682	9434	9627	12810	12810					0.034951654459973724
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8160643362501	2	590.816064	1179.61758	0.90705	0.0005359	-3.6102	-0.002133	-2.7032	-0.0015971	590.8157725289218	31.138	0.2172	31.133	31.084	31.302	-0.0050716	1185	67	0.90755045	0.040412188	0.906031	367.75543	0	16.375732						332	10	3	NaN	NaN	NaN	0.007016	1	15237	15237		75.089	50.527	1	83295			16223	682	9434	9627	12811	12811					0.034951654459973724
LYLEVFSML	9	Oxidation (M)	_LYLEVFSM(Oxidation (M))L_		LYLEVFSM(1)L		LYLEVFSM(96)L	0	0	1		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7937433329	2	565.793743	1129.57293	1.7439	0.00098667	-2.6094	-0.0014764	-0.86551	-0.0004897	565.7921927971622	34.686	0.19295	34.686	34.614	34.806	0	1206	43	0.894683	0.025744617	0.894683	362.7269	0	10.4375305						171	9	3	NaN	NaN	NaN	0.0081087	1	14067	14067		96.245	49.205	1	26881			16224	2060	9435	9628	12812	12812		236			0.013330183082871372
LYLEVFSML	9	Oxidation (M)	_LYLEVFSM(Oxidation (M))L_		LYLEVFSM(1)L		LYLEVFSM(74)L	0	0	1		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;NFE2L2|p.D570N|1|0.15|ENSG00000116044|chr2:177230895-177230895|C/T|missense_variant	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.7937433329	2	565.793743	1129.57293	1.1225	0.00063511	-0.56649	-0.00032051	0.55602	0.00031459	565.793087389618	34.685	0.24107	34.684	34.539	34.78	-0.0006485	1203	73	0.8965218	0.04414797	0.89500237	363.47238	0	17.898712						168	11	3	NaN	NaN	NaN	0.018156	1	13620	13620		74.332	32.547	1	27404			16225	2060	9435	9628	12813	12813		236			0.013330183082871372
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8293090972501	2	554.829309	1107.64407	1.6282	0.00090335	-0.13585	-7.5374E-05	1.4923	0.00082798	554.8291626962421	29.884	0.16891	29.884	29.86	30.029	0	1182	82	0.9093879	0.049631655	0.9093879	368.7766	0	20.126709						333	8	4	NaN	NaN	NaN	0.0055068	1	13194	13194		101.55	43.319	1	102270			16226	4201	9436	9629	12814	12814					0.09454899127990757
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.8293090972501	2	554.829309	1107.64407	1.1609	0.00064411	0.64212	0.00035627	1.803	0.0010004	554.8297692712654	29.907	0.19307	29.9	29.876	30.069	-0.0070667	1182	76	0.9093879	0.045945227	0.90786844	368.7766	0	18.631805						343	9	4	NaN	NaN	NaN	0.011118	1	12822	12822		89.521	39.56	1	90981			16227	4201	9436	9629	12815	12815					0.09454899127990757
LYLHPVDN	8	Unmodified	_LYLHPVDN_					0	0	0		nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.7532671142	2	485.753267	969.491981	1.4645	0.00071139	-1.6035	-0.00077891	-0.13901	-6.7525E-05	485.75387336110657	20.597	0.096315	20.597	20.549	20.646	0	1344	70	0.8098828	0.042494178	0.8098828	328.99963	0	17.262451						175	5	4	NaN	NaN	NaN	0.81807	1	7585	7585		6.794	0	1	15996			16228	3717	9437	9630	12816	12816					0.006014983804220719
LYLHPVDN	8	Unmodified						0	0	0		nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	485.753267	969.491981	1.4485	0.00070361	1.379	0.00066985	2.8275	0.0013735	485.7544781207449	20.622	0.048183	20.608	20.584	20.632	-0.014088	1344	46	0.8098828	0.027716637	0.8083634	328.99963		11.259369	0.0051006	0.0013383	-0.00075972	NaN	6.794	75	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9506.2			16229	3717	9437	9630							0.006014983804220719
LYLKALEGF	9	Unmodified	_LYLKALEGF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.30259282025	2	527.302593	1052.59063	1.375	0.00072503	-1.2494	-0.0006588	0.12559	6.6225E-05	527.302552486338	27.157	0.33785	27.157	27.012	27.35	0	1233	76	0.87812483	0.046019793	0.87812483	356.32758	0	18.674011						296	15	2	NaN	NaN	NaN	0.059222	1	10758	10758		42.995	14.099	1	57038			16230	2057	9438	9631	12817	12817					0.06644101625443
LYLKALEGF	9	Unmodified						0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.302593	1052.59063	0.90524	0.00047734	-1.3019	-0.00068647	-0.39662	-0.00020914	527.3022823677977	27.18	0.24131	27.17	27.074	27.315	-0.010124	1233	76	0.87812483	0.046019793	0.8766054	356.32758		18.674011	0.0066295	-2.3671E-05	-0.00075972	NaN	42.995	352	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54170			16231	2057	9438	9631							0.06644101625443
LYLKDVQDLD	10	Unmodified	_LYLKDVQDLD_					0	0	0		nc|ENSG00000176783|Q96T51-3|RUFY1;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.32171082015	2	611.321711	1220.62887	0.11975	7.3206E-05	-6.3386	-0.0038749	-6.2188	-0.0038017	611.3175597175538	33.599	0.096516	33.597	33.573	33.67	-0.0018501	1191	70	0.90387505	0.042260528	0.9023556	366.1238	0	17.118042						186	5	3	NaN	NaN	NaN	0.68669	1	16314	16314		8.962	1.4216	1	15117			16232	5039	9439	9632	12818	12818					0.027379427494679476
LYLKELLNL	9	Unmodified	_LYLKELLNL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.84462481045	2	559.844625	1117.6747	1.2996	0.00072757	-1.762	-0.00098647	-0.46246	-0.0002589	559.844441895335	30.511	0.072403	30.511	30.511	30.584	0	1116	31	0.94976085	0.01832962	0.94976085	385.10626	0	7.432251						68	4	2	NaN	NaN	NaN	0.10945	1	13593	13593		34.454	0	1	7154.6			16233	3606	9440	9633	12819	12819					0.12056632722351424
LYLKELLNL	9	Unmodified						0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	559.844625	1117.6747	1.1975	0.00067042	-3.5031	-0.0019612	-2.3055	-0.0012907	559.8423068881331	30.559	0.096493	30.553	30.529	30.625	-0.0057564	1113	31	0.9515937	0.018327594	0.95007426	385.84946		7.431427	0.020759	-0.00074153	0.00015671	NaN	34.454	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8036.7			16234	3606	9440	9633							0.12056632722351424
LYLKLWNLI	9	Unmodified	_LYLKLWNLI_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3629847391	2	588.362985	1174.71142	0.8841	0.00052017	-3.2643	-0.0019206	-2.3802	-0.0014004	588.3611011228401	33.6	0.14471	33.6	33.552	33.697	0	1140	37	0.93509084	0.022014499	0.93509084	378.93356	0	8.921082						128	7	3	NaN	NaN	NaN	0.12945	1	15646	15646		31.561	9.4347	1	10627			16235	5381	9441	9634	12820	12820					0.13104929338942384
LYLKLWNLI	9	Unmodified	_LYLKLWNLI_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.3629847391	2	588.362985	1174.71142	0.58314	0.0003431	-3.1406	-0.0018478	-2.5574	-0.0015047	588.3605949496937	33.72	0.16893	33.718	33.645	33.814	-0.0018463	1134	34	0.9387595	0.020176709	0.93724006	380.42026	0	8.176331						155	8	3	NaN	NaN	NaN	0.14301	1	15082	15082		29.598	11.799	1	12291			16236	5381	9441	9634	12821	12821					0.13104929338942384
LYLKVAELL	9	Unmodified	_LYLKVAELL_					0	0	0		ENST00000544718.1_1_12:132403795-132404230:+|nuORF;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENSG00000177169|ENST00000321867|ULK1	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.33389294865	2	531.333893	1060.65323	0.66825	0.00035507	-2.6778	-0.0014228	-2.0096	-0.0010677	531.3336083409097	29.159	0.2172	29.151	29.103	29.32	-0.0077209	1209	43	0.892844	0.025747418	0.8913246	362.2648	0	10.446838						156	10	3	NaN	NaN	NaN	0.31471	1	10903	10903		17.97	3.5447	1	16679			16237	5064	9442	9635	12822	12822					0.12533247693659177
LYLKVAELL	9	Unmodified						0	0	0		ENST00000544718.1_1_12:132403795-132404230:+|nuORF;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENSG00000177169|ENST00000321867|ULK1	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENST00000544718.1_1_12:132403795-132404230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.333893	1060.65323	1.6398	0.0008713	-5.4305	-0.0028854	-3.7906	-0.0020141	531.3307883722111	28.991	0.072433	28.991	28.967	29.039	0	1233	43	0.87812483	0.02576691	0.87812483	356.2926		10.454742	-0.080227	-0.0015424	-0.0065999	NaN	17.97	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4697.6			16238	5064	9442	9635							0.12533247693659177
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8580665367	2	590.858067	1179.70158	1.5252	0.00090119	-1.5445	-0.0009126	-0.019302	-1.1405E-05	590.8571223263642	21.127	0.2168	21.127	21.103	21.32	0	1101	49	0.95892316	0.029311538	0.95892316	388.5722	0	11.877533						323	10	4	NaN	NaN	NaN	0.0094358	1	15829	15829		89.256	13.557	1	118580			16239	1671	9443	9636	12823	12823					0.118917413335339
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.2411365133333	3	394.241137	1179.70158	1.5116	0.00059595	-1.9885	-0.00078397	-0.47692	-0.00018802	394.24032786707454	21.248	0.2406	21.234	21.162	21.402	-0.014004	1470	85	0.7320868	0.05195403	0.73056734	444.97693	0	31.578705						649	11	4	NaN	NaN	NaN	0.1802	1	15245	15245		37.231	11.116	1	176640			16240	1671	9443	9636	12824	12824					0.118917413335339
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8580665367	2	590.858067	1179.70158	1.1767	0.00069525	-1.1562	-0.00068316	0.020458	1.2088E-05	590.857045108316	21.248	0.19252	21.234	21.162	21.354	-0.014004	1101	58	0.95892316	0.0348168	0.9574037	388.5722	0	14.108368						371	9	4	NaN	NaN	NaN	0.0094358	1	15246	15246		89.256	39.223	1	116740			16241	1671	9443	9636	12825	12825					0.118917413335339
LYLLAIDPSMY	11	Unmodified	_LYLLAIDPSMY_					0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.8386821528001	2	649.838682	1297.66281	1.3623	0.00088525	-6.3574	-0.0041313	-4.9952	-0.0032461	649.8333511972703	20.959	0.072092	20.959	20.935	21.007	0	1110	40	0.95342636	0.023824632	0.95342636	385.93863	0	9.643982						92	4	3	NaN	NaN	NaN	0.5528	1	18735	18735		16.584	2.6354	1	6936.1	+		16242	11042	9444	9637	12826	12826					0.025886479168775622
LYLLAIDPSMY	11	Unmodified						0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	649.838682	1297.66281	1.3623	0.00088525	-6.3574	-0.0041313	-4.9952	-0.0032461	649.8333511972703	20.959	0.072092	20.959	20.935	21.007	0	1110	40	0.95342636	0.023824632	0.95342636	385.93863		9.643982	0.0069355	-0.0014266	0.001676	NaN	16.584	92	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6936.1	+		16243	11042	9444	9637							0.025886479168775622
LYLLAIDPSMY	11	Unmodified						0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.838682	1297.66281	1.0189	0.00066214	-4.5743	-0.0029726	-3.5554	-0.0023104	649.8350178934708	20.959	0.07218	20.945	20.945	21.017	-0.014088	1113	37	0.9515937	0.02199316	0.95007426	385.19678		8.902618	-0.0069355	0.00089094	-0.001676	NaN	16.584	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8628.1	+		16244	11042	9444	9637							0.025886479168775622
LYLLCCHLHS	10	Unmodified	_LYLLCCHLHS_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.29646158485	2	601.296462	1200.57837	0.59026	0.00035492	1.0697	0.00064318	1.6599	0.0009981	601.2970366149285	33.816	0.24134	33.814	33.694	33.935	-0.0018463	1158	67	0.92408	0.040394723	0.9225606	374.3779	0	16.365356						309	11	3	NaN	NaN	NaN	0.32448	1	15844	15844		26.732	3.3971	1	117420			16245	4502	9445	9638	12827	12827					-0.013895813808858293
LYLLDVVRN	9	Unmodified	_LYLLDVVRN_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.8242237193501	2	552.824224	1103.63389	1.6546	0.00091471	-0.42095	-0.00023271	1.2337	0.000682	552.8239878097517	23.802	0.07234	23.789	23.741	23.813	-0.013048	1218	28	0.8873258	0.01655817	0.8858064	359.84604	0	6.7149963						60	4	2	NaN	NaN	NaN	0.12328	1	12658	12658		32.453	1.8426	1	11792			16246	3364	9446	9639	12828	12828					0.08622291402775772
LYLLNTTKL	9	Unmodified	_LYLLNTTKL_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-3|MLH1;nc|ENSG00000076242|P40692-2|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.82897474625	2	539.828975	1077.6434	1.7809	0.00096136	-0.12226	-6.5997E-05	1.6586	0.00089536	539.8285392401013	25.153	0.14478	25.153	25.129	25.274	0	1212	49	0.8910048	0.029435158	0.8910048	361.44547	0	11.940674						134	7	3	NaN	NaN	NaN	0.14787	1	11885	11885		28.896	1.0349	1	19106			16247	852	9447	9640	12829	12829					0.10768059688257381
LYLLQLMSL	9	Unmodified	_LYLLQLMSL_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.31992829365	2	547.319928	1092.6253	0.62104	0.00033991	-5.3395	-0.0029224	-4.7184	-0.0025825	547.3174108118806	35.529	0.096523	35.529	35.505	35.602	0.00053024	1221	94	0.885486	0.05708307	0.88396657	359.14456	0	23.152344						197	5	3	NaN	NaN	NaN	0.29681	1	12201	12201		19.118	3.9429	1	24404	+		16248	8460	9448	9641	12830	12830					0.0826960144190707
LYLLQLMSL	9	Unmodified						0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.319928	1092.6253	0.62104	0.00033991	-5.3395	-0.0029224	-4.7184	-0.0025825	547.3174108118806	35.529	0.096523	35.529	35.505	35.602	0.00053024	1221	94	0.885486	0.05708307	0.88396657	359.14456		23.152344	-0.00049464	-0.00045053	0.00016028	NaN	19.118	197	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24404	+		16249	8460	9448	9641							0.0826960144190707
LYLLSISR	8	Unmodified	_LYLLSISR_					0	0	0		ENST00000566111.5_1_1:158970052-158970124:+|nuORF	ENST00000566111.5_1_1:158970052-158970124:+|nuORF	ENST00000566111.5_1_1:158970052-158970124:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5825934607001	1	964.582593	963.575317	-0.45477	-0.00043866	2.9858	0.0028801	2.5311	0.0024414	964.5857564926006	56.083	0.048054	56.082	56.058	56.106	-0.00056458	237	61	1.4784646	0.035527706	1.4769452	300.32938	0	7.2169495						125	3	3	NaN	NaN	NaN	0.84727	1	7301	7301		1.2418	0	1	24557			16250	7624	9449	9642	12831	12831					0.09207234828272703
LYLMGMELF	9	Unmodified	_LYLMGMELF_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.5468015807999	1	1116.5468	1115.53953	0.8498	0.00094884	-7.4387	-0.0083057	-6.5889	-0.0073569	1116.5341886723138	33.864	0.21717	33.863	33.839	34.056	-0.0018463	69	61	1.5776473	0.035321116	1.5761279	319.86093	0	7.1612244						269	10	3	NaN	NaN	NaN	0.11467	1	13103	13103		33.698	2.9072	1	34181			16251	5197	9450	9643	12832	12832					-0.013623067352682483
LYLMPSAA	8	Unmodified	_LYLMPSAA_					0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4488020957	1	865.448802	864.441526	2.3505	0.0020342	0.17081	0.00014783	2.5213	0.0021821	865.4487830132856	36.396	0.096344	36.398	36.374	36.47	0.0016785	375	34	1.3965509	0.019634962	1.3950315	284.14795	0	3.9950256						54	5	2	NaN	NaN	NaN	0.81807	1	5449	5449		6.794	2.7403	1	2633.6	+		16252	10752	9451	9644	12833	12833					0.00388252731056582
LYLMPSAA	8	Unmodified						0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	865.448802	864.441526	1.6644	0.0014405	1.2622	0.0010924	2.9267	0.0025329	865.4502129568148	36.398	0.12064	36.398	36.374	36.495	0	375	34	1.3965509	0.019637108	1.3965509	284.14795		3.9954224	8.3724E-05	0.00068801	0.00075972	NaN	6.794	67	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4189.5	+		16253	10752	9451	9644							0.00388252731056582
LYLMPSAA	8	Unmodified						0	0	0			REV__ENSG00000176678|ENST00000320241|FOXL1	REV__ENSG00000176678|ENST00000320241|FOXL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	865.448802	864.441526	2.3505	0.0020342	0.17081	0.00014783	2.5213	0.0021821	865.4487830132856	36.396	0.096344	36.398	36.374	36.47	0.0016785	375	34	1.3965509	0.019634962	1.3950315	284.14795		3.9950256	-8.3724E-05	-0.00025656	-0.00075972	NaN	6.794	54	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2633.6	+		16254	10752	9451	9644							0.00388252731056582
LYLNGASV	8	Unmodified	_LYLNGASV_					0	0	0		ENSG00000173540|ENST00000308388|GMPPB;nc|ENSG00000173540|Q9Y5P6-2|GMPPB	ENSG00000173540|ENST00000308388|GMPPB	ENSG00000173540|ENST00000308388|GMPPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.4512449367002	1	836.451245	835.443968	1.0338	0.00086468	4.0839	0.003416	5.1177	0.0042807	836.4549334546182	33.72	0.096558	33.718	33.694	33.79	-0.0018463	417	37	1.3715409	0.021455288	1.3700215	279.21094	0	4.367737						70	5	2	NaN	NaN	NaN	0.57691	1	5081	5081		26.732	1.7706	1	4205.6			16255	4899	9452	9645	12834	12834					0.019664244603859515
LYLNRLGIWS	10	Unmodified	_LYLNRLGIWS_					0	0	0			REV__FCER2|p.D227Y|1|0.12|ENSG00000104921|chr19:7690208-7690208|C/A|missense_variant	REV__FCER2|p.D227Y|1|0.12|ENSG00000104921|chr19:7690208-7690208|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.23627403610004	3	412.236274	1233.68699	1.0612	0.00043746	-1.8409	-0.0007589	-0.77975	-0.00032144	412.235279091173	22.573	0.14473	22.559	22.462	22.607	-0.01354	1428	43	0.7580582	0.025954425	0.75653875	460.5301	0	15.76767						169	7	3	NaN	NaN	NaN	0.5917	1	16645	16645		12.307	0	1	23159	+		16256	12993	9453	9646	12835	12835					0.0794966918542741
LYLPDSDVCSE	11	Unmodified	_LYLPDSDVCSE_					0	0	0		ENST00000526567.5_1_11:108094397-108098365:+|nuORF	ENST00000526567.5_1_11:108094397-108098365:+|nuORF	ENST00000526567.5_1_11:108094397-108098365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.18491627040004	3	414.184916	1239.53292	1.0345	0.00042847	-5.6613	-0.0023448	-4.6268	-0.0019164	414.1825979831052	32.973	0.096565	32.973	32.949	33.045	0	1452	43	0.74322224	0.025971413	0.74322224	451.49356	0	15.77713						59	5	2	NaN	NaN	NaN	0.73455	1	17506	17506		2.0359	0	1	4613.6			16257	7429	9454	9647	12836	12836					-0.07726573152899618
LYLPFSLTF	9	Unmodified	_LYLPFSLTF_					0	0	0		ENST00000336184.6_1_1:211546143-211546227:+|nuORF	ENST00000336184.6_1_1:211546143-211546227:+|nuORF	ENST00000336184.6_1_1:211546143-211546227:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.6026602007998	1	1100.60266	1099.59538	0.77636	0.00085446	0.91978	0.0010123	1.6961	0.0018668	1100.603641042956	38.876	0.12016	38.876	38.828	38.948	0	63	49	1.5811787	0.028247952	1.5811787	320.6337	0	5.7281494						103	6	2	NaN	NaN	NaN	0.020004	1	12837	12837		71.993	6.3208	1	7921.9			16258	6523	9455	9648	12837	12837					0.04956985768217237
LYLPQEQLTHW	11	Unmodified	_LYLPQEQLTHW_					0	0	0		GMNN-C6orf62|1|fusion;nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62	GMNN-C6orf62|1|fusion	GMNN-C6orf62|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.36952668	2	714.369527	1426.7245	1.3069	0.00093358	-6.5473	-0.0046772	-5.2405	-0.0037436	714.8680854095016	26.722	0.048246	26.711	26.687	26.735	-0.010645	1047	37	0.99186665	0.021941006	0.9903472	401.11612	0	8.873077						48	3	2	NaN	NaN	NaN	0.57804	1	19299	19299		15.463	0	1	5287.4			16259	1866	9456	9649	12838	12838					0.02820715660368478
LYLPQEQLTHW	11	Unmodified						0	0	0		GMNN-C6orf62|1|fusion;nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62	GMNN-C6orf62|1|fusion	GMNN-C6orf62|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	714.369527	1426.7245	1.1977	0.00085562	-4.2982	-0.0030705	-3.1005	-0.0022149	714.8678420510856	26.698	0.048262	26.698	26.674	26.722	0	1053	52	0.9882094	0.03109485	0.9882094	399.6371		12.574921	-0.0065755	0.0016497	-0.0010689	NaN	15.463	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6785.3			16260	1866	9456	9649							0.02820715660368478
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7946006126501	2	575.794601	1149.57465	1.3317	0.00076678	-1.9776	-0.0011387	-0.6459	-0.00037191	575.7932217201059	36.036	0.12064	36.036	35.988	36.109	0	1215	40	0.8891654	0.023912191	0.8891654	360.4143	0	9.692566						107	6	2	NaN	NaN	NaN	0.20577	1	14787	14787		24.961	0.39899	1	13334			16261	3084	9457	9650	12839	12839					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1150.5819247587	1	1150.58192	1149.57465	2.6041	0.0029963	-0.61235	-0.00070456	1.9918	0.0022917	1150.580556627823	36.036	0.24127	36.036	35.988	36.229	0	57	139	1.5847093	0.08130765	1.5847093	321.17636	0	16.47876						548	11	4	NaN	NaN	NaN	6.0019E-18	1	14790	14790		158.52	93.972	1	77703			16262	3084	9457	9650	12840	12840					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1150.5819247587	1	1150.58192	1149.57465	2.099	0.0024151	-0.59096	-0.00067995	1.5081	0.0017352	1150.580594639786	36.035	0.21702	36.036	35.94	36.157	0.0011024	57	136	1.5847093	0.07953584	1.5831898	321.17636	0	16.11969						463	10	3	NaN	NaN	NaN	3.1345E-12	1	14286	14286		151.07	66.192	1	60071			16263	3084	9457	9650	12841	12841					0.005843953885914743
LYLPSFFTY	9	Unmodified						0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.794601	1149.57465	1.2107	0.00069713	-2.3834	-0.0013724	-1.1727	-0.00067522	575.7928097261284	36.035	0.096451	36.036	35.988	36.084	0.0011024	1212	46	0.8910048	0.02759105	0.88948536	361.15988		11.183746	-0.00017932	-0.00032156	0.00015998	NaN	24.961	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9000			16264	3084	9457	9650							0.005843953885914743
LYLPTLTHF	9	Unmodified	_LYLPTLTHF_					0	0	0		ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8080423389	2	552.808042	1103.60153	1.1806	0.00065263	0.18862	0.00010427	1.3692	0.0007569	552.8079866999702	28.75	0.07239	28.75	28.725	28.798	0	1179	64	0.9112251	0.038589835	0.9112251	369.53827	0	15.64975						150	4	3	NaN	NaN	NaN	0.42773	1	13004	13004		12.588	4.2976	1	18976			16265	7478	9458	9651	12842	12842					0.05387503999736509
LYLPTLTHF	9	Unmodified	_LYLPTLTHF_					0	0	0		ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.8080423389	2	552.808042	1103.60153	1.0826	0.00059845	0.22758	0.00012581	1.3102	0.00072426	552.8081884566938	28.749	0.12065	28.74	28.716	28.837	-0.0083504	1176	67	0.9130621	0.04042095	0.91154265	370.28326	0	16.392303						155	6	3	NaN	NaN	NaN	0.078597	1	12654	12654		38.918	18.362	1	17188			16266	7478	9458	9651	12843	12843					0.05387503999736509
LYLSLNDIR	9	Unmodified	_LYLSLNDIR_					0	0	0		CHAD|p.H108L|1|0.24|ENSG00000136457|chr17:50468491-50468491|T/A|missense_variant	CHAD|p.H108L|1|0.24|ENSG00000136457|chr17:50468491-50468491|T/A|missense_variant	CHAD|p.H108L|1|0.24|ENSG00000136457|chr17:50468491-50468491|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8138559982999	2	553.813856	1105.61316	1.0851	0.00060094	-0.38758	-0.00021464	0.69753	0.0003863	553.8136743558694	22.163	0.12061	22.149	22.125	22.246	-0.013731	1176	82	0.9130621	0.049631655	0.91154265	370.27496	0	20.127167						213	6	3	NaN	NaN	NaN	0.12866	1	12739	12739		31.675	1.0653	1	27328			16267	102	9459	9652	12844	12844					0.06457701023055051
LYLSMKDTEK	10	Unmodified	_LYLSMKDTEK_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.8811680796667	3	409.881168	1226.62167	1.2434	0.00050964	-0.56334	-0.0002309	0.68003	0.00027873	409.88119303136796	21.344	0.1203	21.344	21.32	21.44	0	1443	43	0.7487872	0.025962949	0.7487872	454.92682	0	15.773804						140	6	3	NaN	NaN	NaN	0.5358	1	17155	17155		14.45	0	1	17078			16268	2051	9460	9653	12845	12845					0.017428868774004513
LYLSSQSLLFL	11	Unmodified	_LYLSSQSLLFL_					0	0	0		ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.36592135855	2	642.365921	1282.71729	1.0518	0.00067562	6.5586	0.004213	7.6104	0.0048886	642.3700937216975	33.697	0.16893	33.697	33.624	33.793	0	1098	46	0.960755	0.027475119	0.960755	388.95288	0	11.123047						133	8	2	NaN	NaN	NaN	0.37105	1	18483	18483		23.086	4.8523	1	15857			16269	6774	9461	9654	12846	12846					0.0872398305994011
LYLTEWTGLCY	11	Unmodified	_LYLTEWTGLCY_					0	0	0			REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.3259389183002	2	681.325939	1360.63732	1.058	0.00072087	-7.7109	-0.0052537	-6.6529	-0.0045328	681.8208387466649	30.873	0.21718	30.873	30.849	31.066	0	1077	55	0.9735726	0.03295064	0.9735726	393.90146	0	13.331604						244	10	4	NaN	NaN	NaN	0.44477	1	19688	19688		20.449	3.8645	1	29742	+		16270	12878	9462	9655	12847	12847					-0.028568266055344793
LYLTEWTGLCY	11	Unmodified						0	0	0			REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	681.325939	1360.63732	1.058	0.00072087	-7.7109	-0.0052537	-6.6529	-0.0045328	681.8208387466649	30.873	0.21718	30.873	30.849	31.066	0	1077	55	0.9735726	0.03295064	0.9735726	393.90146		13.331604	-0.033123	0.0011689	0.00075972	NaN	20.449	244	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29742	+		16271	12878	9462	9655							-0.028568266055344793
LYLTEWTGLCY	11	Unmodified						0	0	0			REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	681.325939	1360.63732	1.1607	0.00079083	-9.5634	-0.0065158	-8.4026	-0.0057249	681.3196087969915	30.945	0.16897	30.94	30.867	31.036	-0.0050716	1077	61	0.9735726	0.036619663	0.9720532	393.90146		14.816101	0.033123	-0.0013554	-0.00075972	NaN	20.449	204	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30857	+		16272	12878	9462	9655							-0.028568266055344793
LYLTGVVVL	9	Unmodified	_LYLTGVVVL_					0	0	0		ENST00000476970.1_1_1:150318503-150318665:+|nuORF;ENST00000467329.5_1_1:150316853-150325452:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.6077455787002	1	976.607746	975.600469	1.5467	0.0015105	0.39844	0.00038912	1.9451	0.0018996	976.6084493877984	33.456	0.38601	33.456	33.407	33.793	0	153	172	1.5281296	0.10110915	1.5281296	310.3642	0	20.53537						869	17	5	NaN	NaN	NaN	0.02781	1	7780	7780		61.977	0	1	365100			16273	2138	9463	9656	12848	12848					0.11169289630868207
LYLTGVVVL	9	Unmodified	_LYLTGVVVL_					0	0	0		ENST00000476970.1_1_1:150318503-150318665:+|nuORF;ENST00000467329.5_1_1:150316853-150325452:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.6077455787002	1	976.607746	975.600469	1.4277	0.0013943	-0.031319	-3.0586E-05	1.3964	0.0013638	976.6080560721075	33.454	0.19306	33.452	33.38	33.573	-0.0018501	150	157	1.5299006	0.09219587	1.5283811	310.7239	0	18.725067						648	9	4	NaN	NaN	NaN	0.0055068	1	7624	7624		101.55	29.561	1	323850			16274	2138	9463	9656	12849	12849					0.11169289630868207
LYLTGVVVL	9	Unmodified						0	0	0		ENST00000476970.1_1_1:150318503-150318665:+|nuORF;ENST00000467329.5_1_1:150316853-150325452:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	ENST00000476970.1_1_1:150318503-150318665:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	976.607746	975.600469	0.85458	0.00083459	0.69131	0.00067514	1.5459	0.0015097	976.6085599531419	33.575	0.072407	33.573	33.573	33.645	-0.0018463	159	61	1.5245869	0.03543353	1.5230675	309.64468		7.1965637	0.058732	0.00022313	-0.002531	NaN	61.977	102	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18249			16275	2138	9463	9656							0.11169289630868207
LYLTIARQL	9	Unmodified	_LYLTIARQL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.8345914404001	2	545.834591	1089.65463	1.5232	0.00083143	0.17839	9.737E-05	1.7016	0.0009288	545.8348640246153	25.153	0.12065	25.153	25.105	25.226	0	1203	52	0.8965218	0.031249523	0.8965218	363.6329	0	12.674927						128	6	3	NaN	NaN	NaN	0.024221	1	12396	12396		66.656	22.354	1	16161			16276	2919	9464	9657	12850	12850					0.11338881782421595
LYLTIARQL	9	Unmodified	_LYLTIARQL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8345914404001	2	545.834591	1089.65463	1.6386	0.0008944	-1.5236	-0.00083166	0.11494	6.2737E-05	545.8333664613269	25.177	0.12066	25.165	25.117	25.238	-0.012011	1203	49	0.8965218	0.029416084	0.89500237	363.6329	0	11.931274						129	6	3	NaN	NaN	NaN	0.097143	1	12092	12092		36.235	7.3392	1	15660			16277	2919	9464	9657	12851	12851					0.11338881782421595
LYLTIARQL	9	Unmodified						0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.834591	1089.65463	2.1089	0.0011511	-2.2397	-0.0012225	-0.1308	-7.1395E-05	546.3331892835453	24.936	0.048256	24.924	24.924	24.972	-0.012392	1239	43	0.87444305	0.02576971	0.8729236	354.67767		10.4522705	-0.11489	-0.0021865	-0.011799	NaN	66.656	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3432.8			16278	2919	9464	9657							0.11338881782421595
LYLVGNVCIL	10	Unmodified	_LYLVGNVCIL_					0	0	0		nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8175527802001	2	553.817553	1105.62055	1.906	0.0010556	-9.9058	-0.005486	-7.9998	-0.0044304	553.8126635277637	18.58	0.095989	18.58	18.556	18.652	0	1233	46	0.87812483	0.027611852	0.87812483	356.1068	0	11.197479						97	5	3	NaN	NaN	NaN	0.36718	1	13097	13097		24.961	2.8347	1	10808			16279	4445	9465	9658	12852	12852					0.07196717299166266
LYLWEGSPP	9	Unmodified	_LYLWEGSPP_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2687500029001	2	531.26875	1060.52295	1.6662	0.00088518	-10.73	-0.0057004	-9.0636	-0.0048152	531.2636484889615	29.184	0.048286	29.184	29.16	29.208	0	1266	55	0.85786515	0.03315395	0.85786515	348.07297	0	13.451996						42	3	2	NaN	NaN	NaN	0.65818	1	11115	11115		2.7852	0.60885	1	3428.3	+		16280	8728	9466	9659	12853	12853					-0.004893483053365344
LYLWPCTPA	9	Unmodified	_LYLWPCTPA_					0	0	0		ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2676957579001	2	532.267696	1062.52084	0.95198	0.00050671	-5.4728	-0.002913	-4.5208	-0.0024063	532.2647043565062	20.285	0.096212	20.271	20.222	20.319	-0.014141	1254	58	0.8652351	0.035001516	0.86371565	351.05478	0	14.201294						121	5	2	NaN	NaN	NaN	0.3389	1	10967	10967		16.417	2.6796	1	24176			16281	6436	9467	9660	12854	12854					-0.00792100314788513
LYLYKFMEALF	11	Unmodified	_LYLYKFMEALF_					0	0	0			REV__nc|ENSG00000116406|Q9BZQ6-2|EDEM3	REV__nc|ENSG00000116406|Q9BZQ6-2|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3779744888001	2	719.377974	1436.7414	1.2951	0.00093166	-4.5199	-0.0032515	-3.2248	-0.0023199	719.374191599686	28.653	0.24132	28.653	28.484	28.725	0	1032	49	1.0010062	0.02923578	1.0010062	404.78513	0	11.822327						184	11	2	NaN	NaN	NaN	0.62211	1	20314	20314		12.57	0.83085	1	22223	+		16282	9218	9468	9661	12855	12855					0.04049500221958624
LYLYWLFSGQK	11	Unmodified	_LYLYWLFSGQK_					0	0	0			REV__ENSG00000214360|ENST00000398186|EFCAB9	REV__ENSG00000214360|ENST00000398186|EFCAB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3793630847999	2	709.379363	1416.74417	1.454	0.0010314	-10.189	-0.0072281	-8.7354	-0.0061967	709.3721311623027	25.178	0.0965	25.178	25.129	25.226	0	981	31	1.0320443	0.018240929	1.0320443	417.3924	0	7.377228						58	5	2	NaN	NaN	NaN	0.6085	1	20199	20199		13.463	1.4144	1	3721.9	+		16283	11286	9469	9662	12856	12856					0.05247091671094495
LYLYYTLPTF	10	Unmodified	_LYLYYTLPTF_					0	0	0		ENST00000409514.5_2_2:233446968-233447088:+|nuORF	ENST00000409514.5_2_2:233446968-233447088:+|nuORF	ENST00000409514.5_2_2:233446968-233447088:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.341914946	2	647.341915	1292.66928	0.93926	0.00060802	0.31104	0.00020135	1.2503	0.00080937	647.3421409613989	35.48	0.12056	35.481	35.409	35.529	0.00052643	1092	46	0.9644182	0.027466238	0.96289873	390.40387	0	11.118561						157	6	3	NaN	NaN	NaN	0.67523	1	17797	17797		9.746	0.13435	1	11652			16284	6859	9470	9663	12857	12857					0.034649091398932796
LYMAPLPP	8	Unmodified	_LYMAPLPP_					0	0	0			REV__ENST00000397501.5_1_8:27316032-27316239:+|nuORF	REV__ENST00000397501.5_1_8:27316032-27316239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.2462320343	2	451.246232	900.477911	1.6735	0.00075514	0.66093	0.00029824	2.3344	0.0010534	451.2464343728247	16.47	0.047997	16.47	16.422	16.47	0	1410	28	0.76917666	0.016669631	0.76917666	312.79822	0	6.7789917						32	3	2	NaN	NaN	NaN	0.84651	1	6092	6092		1.6704	0	1	1700	+		16285	12017	9471	9664	12858	12858					0.02369129627777511
LYMDKFEEF	9	Oxidation (M)	_LYM(Oxidation (M))DKFEEF_		LYM(1)DKFEEF		LYM(44)DKFEEF	0	0	1		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.2759147204999	2	619.275915	1236.53728	0.74213	0.00045958	0.32981	0.00020424	1.0719	0.00066382	619.7779501051988	22.428	0.12029	22.414	22.366	22.486	-0.013731	1185	55	0.90755045	0.033064544	0.906031	367.55966	0	13.391205						207	6	3	NaN	NaN	NaN	0.057383	1	16703	16703		43.776	23.327	1	21880			16286	993	9472	9665	12859	12859		106			-0.07153063939381354
LYMGPEYIKYF	11	Unmodified	_LYMGPEYIKYF_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3519567035501	2	712.351957	1422.68936	1.2301	0.00087623	-2.2358	-0.0015927	-1.0057	-0.00071644	712.3491707207622	28.581	0.096535	28.581	28.532	28.629	0	1032	58	1.0010062	0.03473431	1.0010062	404.82324	0	14.04715						132	5	3	NaN	NaN	NaN	0.63477	1	20235	20235		11.739	4.7545	1	8652.7			16287	13719	9473	9666	12860	12860					-0.005076631917972918
LYMGPEYIKYF	11	Oxidation (M)	_LYM(Oxidation (M))GPEYIKYF_		LYM(1)GPEYIKYF		LYM(49)GPEYIKYF	0	0	1		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.3494140146	2	720.349414	1438.68428	1.7563	0.0012651	-2.5741	-0.0018543	-0.81786	-0.00058914	720.3479109630223	26.239	0.12067	26.239	26.191	26.312	0	1050	46	0.9900381	0.027430713	0.9900381	400.34467	0	11.092255						138	6	3	NaN	NaN	NaN	0.054678	1	20319	20319		48.65	29.487	1	14070			16288	13719	9473	9667	12861	12861		659			-0.0175196705442886
LYMGPEYIKYF	11	Oxidation (M)	_LYM(Oxidation (M))GPEYIKYF_		LYM(1)GPEYIKYF		LYM(52)GPEYIKYF	0	0	1		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3494140146	2	720.349414	1438.68428	1.6851	0.0012139	-2.5547	-0.0018402	-0.86952	-0.00062636	720.3469465408594	26.263	0.12063	26.252	26.204	26.324	-0.011137	1044	43	0.99369496	0.02559787	0.9921755	401.8234	0	10.351105						138	6	3	NaN	NaN	NaN	0.040708	1	19352	19352		52.195	36.373	1	11446			16289	13719	9473	9667	12862	12862		659			-0.0175196705442886
LYMIYRILDDE	11	Unmodified	_LYMIYRILDDE_					0	0	0		tr|U7ST75|U7ST75_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01247PE=4SV=1	tr|U7ST75|U7ST75_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01247PE=4SV=1	tr|U7ST75|U7ST75_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01247PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3630527061001	2	722.363053	1442.71155	1.9867	0.0014352	-4.1831	-0.0030217	-2.1963	-0.0015865	722.359906043056	25.829	0.19309	25.817	25.745	25.938	-0.011602	1011	100	1.0137935	0.060328126	1.012274	409.93982	0	24.39441						397	9	3	NaN	NaN	NaN	0.29515	1	19369	19369		25.801	4.0299	1	38754			16290	13843	9474	9668	12863	12863					0.00790516485972148
LYMKMAEH	8	Unmodified	_LYMKMAEH_					0	0	0			REV__ENSG00000128274|ENST00000642412|A4GALT	REV__ENSG00000128274|ENST00000642412|A4GALT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.4797846481001	1	1022.47978	1021.47251	1.2688	0.0012974	7.2673	0.0074307	8.5361	0.008728	1022.4847752702525	31.234	0.16893	31.229	31.133	31.302	-0.0050716	177	130	1.5139546	0.076194525	1.5124352	307.29285	0	15.465485						282	8	2	NaN	NaN	NaN	0.67593	1	9234	9234		20.555	2.521	1	32841	+		16291	9445	9475	9669	12864	12864					-0.037369172263424844
LYMNLQPVL	9	Unmodified	_LYMNLQPVL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5965289654	1	1090.59653	1089.58925	1.3285	0.0014489	-3.0084	-0.0032809	-1.6798	-0.001832	1090.5913050172455	31.139	0.072393	31.139	31.115	31.187	0	66	58	1.579413	0.033553362	1.579413	320.31213	0	6.8047485						112	4	3	NaN	NaN	NaN	0.12945	1	12385	12385		31.561	11.048	1	10631			16292	3242	9476	9670	12865	12865					0.048041442650628596
LYMNLQPVL	9	Unmodified	_LYMNLQPVL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5965289654	1	1090.59653	1089.58925	1.0175	0.0011097	-0.082113	-8.9552E-05	0.9354	0.0010201	1090.5963041052346	31.138	0.096495	31.133	31.109	31.205	-0.0050716	69	58	1.5776473	0.033553362	1.5761279	319.954	0	6.804779						106	5	2	NaN	NaN	NaN	0.02781	1	12080	12080		61.977	30.416	1	10619			16293	3242	9476	9670	12866	12866					0.048041442650628596
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3302960147001	2	594.330296	1186.64604	1.0616	0.00063094	-1.9383	-0.001152	-0.87669	-0.00052104	594.3293038539397	31.718	0.36204	31.718	31.621	31.983	0	1152	79	0.92775106	0.047708333	0.92775106	375.91534	0	19.330963						679	16	6	NaN	NaN	NaN	0.018156	1	16064	16064		74.332	44.734	1	280640			16294	4744	9477	9671	12867	12867					0.06018191821590335
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3302960147001	2	594.330296	1186.64604	1.016	0.00060381	-1.7051	-0.0010134	-0.68918	-0.0004096	594.3292260523084	32.418	0.048256	32.418	32.418	32.466	0	1155	37	0.92591566	0.02202636	0.92591566	375.17163	0	8.924866						60	3	2	NaN	NaN	NaN	0.056143	1	16065	16065		44.302	25.139	1	5158.9			16295	4744	9477	9671	12868	12868					0.06018191821590335
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.3302960147001	2	594.330296	1186.64604	0.51178	0.00030417	-2.8337	-0.0016842	-2.3219	-0.00138	594.3288383313968	32.393	0.12067	32.389	32.316	32.437	-0.0037613	1140	49	0.93509084	0.029355824	0.9335714	378.8893	0	11.894684						141	6	3	NaN	NaN	NaN	0.23112	1	15451	15451		23.334	11.786	1	14138			16296	4744	9477	9671	12869	12869					0.06018191821590335
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.3302960147001	2	594.330296	1186.64604	0.65235	0.00038771	-1.8048	-0.0010726	-1.1525	-0.00068494	594.3297263509938	31.765	0.28962	31.761	31.616	31.906	-0.0044155	1149	82	0.92958635	0.04954064	0.9280669	376.65894	0	20.073364						663	13	5	NaN	NaN	NaN	0.04947	1	15452	15452		47.136	6.982	1	285270			16297	4744	9477	9671	12870	12870					0.06018191821590335
LYNHNLMKL	9	Unmodified	_LYNHNLMKL_					0	0	0			REV__ENST00000263857.10_1_2:86249175-86249337:-|nuORF	REV__ENST00000263857.10_1_2:86249175-86249337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.54270964876673	3	382.54271	1144.6063	2.0738	0.0007933	0.87734	0.00033562	2.9511	0.0011289	382.5428703147883	18.388	0.096008	18.388	18.364	18.46	0	1431	49	0.75620437	0.02966547	0.75620437	459.79865	0	18.037628						97	5	2	NaN	NaN	NaN	0.42773	1	14614	14614		7.5876	2.6869	1	12858	+		16298	11562	9478	9672	12871	12871					0.039780648708756416
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.55723610683333	3	376.557236	1126.64988	2.0155	0.00075895	-3.636	-0.0013692	-1.6205	-0.00061021	376.5559010894351	18.077	0.095963	18.077	18.029	18.125	0	1425	37	0.7599118	0.02224183	0.7599118	462.14038	0	13.526398						98	5	3	NaN	NaN	NaN	0.3389	1	13980	13980		10.36	2.7726	1	10095			16299	2424	9479	9673	12872	12872					0.09161997639648689
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3322159269501	2	564.332216	1126.64988	2.3218	0.0013103	-0.80277	-0.00045303	1.519	0.00085723	564.3318295657242	18.077	0.11993	18.077	18.029	18.149	0	1170	40	0.91673553	0.023878634	0.91673553	371.67917	0	9.681305						111	6	3	NaN	NaN	NaN	0.0072287	1	13981	13981		98.041	70.745	1	10537			16300	2424	9479	9673	12873	12873					0.09161997639648689
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3322159269501	2	564.332216	1126.64988	2.0759	0.0011715	-1.2448	-0.00070248	0.83115	0.00046904	564.3316310051105	18.362	0.19214	18.348	18.276	18.468	-0.013948	1170	40	0.91673553	0.023878634	0.9152161	371.67917	0	9.681305						127	9	2	NaN	NaN	NaN	0.63698	1	13535	13535		3.9685	2.2663	1	9628.1			16301	2424	9479	9673	12874	12874					0.09161997639648689
LYNHVKQLL	9	Unmodified						0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	376.557236	1126.64988	2.5017	0.00094203	-3.2593	-0.0012273	-0.75762	-0.00028529	376.5559357651158	18.362	0.12008	18.348	18.276	18.396	-0.013948	1422	34	0.7617651	0.020385087	0.7602457	463.26752		12.397186	0.1355	0.00030286	0.00016698	NaN	10.36	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5575.5			16302	2424	9479	9673							0.09161997639648689
LYNKCVKEPTV	11	Unmodified	_LYNKCVKEPTV_					0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.34720567665	2	647.347206	1292.67986	0.93785	0.00060711	-8.2121	-0.0053161	-7.2743	-0.004709	647.3415879547222	35.434	0.26536	35.434	35.313	35.578	0	1095	40	0.9625867	0.023809195	0.9625867	389.66248	0	9.638123						238	12	3	NaN	NaN	NaN	0.62211	1	18632	18632		12.57	1.3994	1	19023	+		16303	9726	9480	9674	12875	12875					0.04522568522656911
LYNKCVKEPTV	11	Unmodified						0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	647.347206	1292.67986	0.93785	0.00060711	-8.2121	-0.0053161	-7.2743	-0.004709	647.3415879547222	35.434	0.26536	35.434	35.313	35.578	0	1095	40	0.9625867	0.023809195	0.9625867	389.66248		9.638123	-0.023624	-0.0002073	-0.00015602	NaN	12.57	238	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19023	+		16304	9726	9480	9674							0.04522568522656911
LYNKIREDF	9	Unmodified	_LYNKIREDF_					0	0	0		ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.316762828	2	599.316763	1196.61897	1.5168	0.00090905	-5.164	-0.0030949	-3.6472	-0.0021858	599.312112870283	17.57	0.11991	17.556	17.532	17.652	-0.013567	1140	64	0.93509084	0.03854823	0.9335714	378.85303	0	15.617859						80	6	2	NaN	NaN	NaN	0.054111	1	15719	15719		45.165	16.269	1	8137.6			16305	5308	9481	9675	12876	12876					0.028527995347531032
LYNLQFLE	8	Unmodified	_LYNLQFLE_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2765750350001	2	520.276575	1038.5386	1.2796	0.00066575	-1.6174	-0.00084149	-0.33779	-0.00017574	520.2757379386956	30.8	0.24129	30.794	30.698	30.939	-0.0057545	1266	73	0.85786515	0.044238746	0.8563457	348.1674	0	17.954437						444	11	5	NaN	NaN	NaN	0.49126	1	9937	9937		31.561	5.4461	1	104630	+		16306	13175	9482	9676	12877	12877					0.020869382117098212
LYNPKITSEL	10	Unmodified	_LYNPKITSEL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3267961980501	2	589.326796	1176.63904	1.5676	0.00092382	-5.5842	-0.0032909	-4.0167	-0.0023671	589.3228793267511	21.368	0.096214	21.368	21.344	21.44	0	1188	70	0.90571284	0.04224682	0.90571284	367.02155	0	17.11966						235	5	4	NaN	NaN	NaN	0.10967	1	15719	15719		44.633	14.598	1	45553			16307	902	9483	9677	12878	12878					0.057785504747243976
LYNPKITSEL	10	Unmodified	_LYNPKITSEL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3267961980501	2	589.326796	1176.63904	1.1927	0.00070291	-3.3982	-0.0020027	-2.2055	-0.0012998	589.324334514787	21.392	0.04808	21.378	21.354	21.402	-0.014006	1191	79	0.90387505	0.04774952	0.9023556	366.2768	0	19.349518						172	3	3	NaN	NaN	NaN	0.16811	1	15148	15148		38.269	6.5939	1	36586			16308	902	9483	9677	12879	12879					0.057785504747243976
LYNSPLTESCL	11	Unmodified	_LYNSPLTESCL_					0	0	0		nc|ENSG00000175182|Q6UXB0-2|FAM131A;nc|ENSG00000175182|Q6UXB0-1|FAM131A;ENSG00000175182|ENST00000383847|FAM131A	nc|ENSG00000175182|Q6UXB0-2|FAM131A	nc|ENSG00000175182|Q6UXB0-2|FAM131A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.29992113305	2	620.299921	1238.58529	1.8605	0.0011541	-8.5	-0.0052726	-6.6395	-0.0041185	620.2943499051398	29.98	0.21725	29.98	29.932	30.149	0	1122	118	0.9460945	0.071558714	0.9460945	383.16312	0	28.980896						563	10	4	NaN	NaN	NaN	0.33431	1	17488	17488		24.4	5.2367	1	182070			16309	4984	9484	9678	12880	12880					-0.024459900193278372
LYNTNHDFKF	10	Unmodified	_LYNTNHDFKF_					0	0	0		nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.8118446256	2	649.811845	1297.60914	1.6409	0.0010663	-9.0349	-0.005871	-7.394	-0.0048047	649.8054190463887	26.65	0.14482	26.65	26.601	26.746	0	1128	73	0.9424274	0.044005275	0.9424274	381.48654	0	17.812958						303	7	3	NaN	NaN	NaN	0.50283	1	18731	18731		19.336	2.4781	1	50800			16310	696	9485	9679	12881	12881					-0.02776388470647362
LYNTNHDFKF	10	Unmodified						0	0	0		nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.811845	1297.60914	1.0647	0.00069184	-9.0601	-0.0058873	-7.9954	-0.0051955	649.80589132839	26.673	0.21718	26.663	26.614	26.832	-0.010643	1128	76	0.9424274	0.04583633	0.94090796	381.48654		18.554169	0.0065785	-1.2966E-05	-0.00075972	NaN	19.336	377	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56176			16311	696	9485	9679							-0.02776388470647362
LYNWEVAIF	9	Unmodified	_LYNWEVAIF_					0	0	0		ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2	ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.79767461785	2	577.797675	1153.5808	0.85169	0.00049211	-3.3908	-0.0019592	-2.5391	-0.0014671	577.7958792460522	35.096	0.19306	35.096	35.048	35.241	0	1224	73	0.883646	0.04414797	0.883646	358.16232	0	17.894196						227	9	3	NaN	NaN	NaN	0.074859	1	14926	14926		39.459	13.344	1	30133			16312	1165	9486	9680	12882	12882					0.010149136200880093
LYNWEVAIF	9	Unmodified	_LYNWEVAIF_					0	0	0		ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2	ENST00000586788.1_1_19:531880-536341:+|nuORF	ENST00000586788.1_1_19:531880-536341:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.79767461785	2	577.797675	1153.5808	0.96714	0.00055881	-3.9261	-0.0022685	-2.959	-0.0017097	577.7958752711974	35.094	0.16895	35.094	35.07	35.239	-4.5776E-05	1221	73	0.885486	0.0441432	0.88396657	358.9081	0	17.892273						211	8	2	NaN	NaN	NaN	0.04947	1	14436	14436		47.136	21.021	1	28999			16313	1165	9486	9680	12883	12883					0.010149136200880093
LYPAAIVTI	9	Unmodified	_LYPAAIVTI_					0	0	0		ENST00000237724.9_1_1:220369588-220445709:-|nuORF;ENSG00000118873|ENST00000358951|RAB3GAP2	ENST00000237724.9_1_1:220369588-220445709:-|nuORF	ENST00000237724.9_1_1:220369588-220445709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5764454503002	1	960.576445	959.569169	1.3869	0.0013322	0.53051	0.00050959	1.9174	0.0018418	960.576513601894	30.391	0.096539	30.391	30.342	30.439	0	228	70	1.4837929	0.04085028	1.4837929	301.4295	0	8.298645						205	5	3	NaN	NaN	NaN	0.029744	1	7337	7337		59.445	22.143	1	33764			16314	2193	9487	9681	12884	12884					0.087767165967648
LYPAAIVTI	9	Unmodified	_LYPAAIVTI_					0	0	0		ENST00000237724.9_1_1:220369588-220445709:-|nuORF;ENSG00000118873|ENST00000358951|RAB3GAP2	ENST00000237724.9_1_1:220369588-220445709:-|nuORF	ENST00000237724.9_1_1:220369588-220445709:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5764454503002	1	960.576445	959.569169	1.1216	0.0010774	0.39513	0.00037955	1.5167	0.0014569	960.5765732312836	30.39	0.12065	30.383	30.335	30.456	-0.0064106	228	79	1.4837929	0.046181083	1.4822735	301.4295	0	9.381592						238	6	3	NaN	NaN	NaN	0.034898	1	7189	7189		53.324	3.4908	1	37052			16315	2193	9487	9681	12885	12885					0.087767165967648
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.803291312	2	577.803291	1153.59203	1.933	0.0011169	3.382	0.0019541	5.315	0.003071	578.3062040289341	23.658	0.16868	23.658	23.586	23.754	0	1152	100	0.92775106	0.06062156	0.92775106	376.03906	0	24.57135						347	8	3	NaN	NaN	NaN	0.032417	1	14931	14931		55.947	29.216	1	45977			16316	411	9488	9682	12886	12886					0.021377357142227993
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.5379530302	3	385.537953	1153.59203	1.6684	0.00064321	-1.9403	-0.00074808	-0.27199	-0.00010486	385.53711442029913	23.778	0.19282	23.765	23.693	23.886	-0.013048	1437	40	0.7524962	0.024107158	0.75097674	457.5016	0	14.656616						182	9	3	NaN	NaN	NaN	0.3389	1	14442	14442		14.425	0	1	26179			16317	411	9488	9682	12887	12887					0.021377357142227993
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.803291312	2	577.803291	1153.59203	1.6081	0.00092919	-1.2732	-0.00073563	0.33498	0.00019355	577.8030082719488	23.778	0.241	23.765	23.669	23.91	-0.013048	1149	67	0.92958635	0.04038602	0.9280669	376.78296	0	16.369385						277	11	3	NaN	NaN	NaN	0.17818	1	14443	14443		26.732	11.556	1	37588			16318	411	9488	9682	12888	12888					0.021377357142227993
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.276575035	2	502.276575	1002.5386	1.7452	0.00087656	-1.9117	-0.00096022	-0.16656	-8.366E-05	502.27582993968514	27.664	0.2654	27.664	27.591	27.857	0	1290	58	0.84311575	0.03505075	0.84311575	342.34198	0	14.232147						379	12	4	NaN	NaN	NaN	0.14301	1	8701	8701		29.598	6.2639	1	93686			16319	4038	9489	9683	12889	12889					0.03742938211712499
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.5458736034001	1	1003.54587	1002.5386	2.1289	0.0021365	-1.6151	-0.0016208	0.5138	0.00051562	1003.543661598916	27.688	0.28956	27.688	27.615	27.905	0	168	106	1.5192716	0.06205809	1.5192716	308.44965	0	12.599335						750	13	5	NaN	NaN	NaN	0.010404	1	8702	8702		91.563	33.328	1	295860			16320	4038	9489	9683	12890	12890					0.03742938211712499
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.5458736034001	1	1003.54587	1002.5386	1.7218	0.001728	-1.7837	-0.00179	-0.061844	-6.2063E-05	1003.544402722328	27.711	0.33786	27.702	27.581	27.919	-0.009552	168	103	1.5192716	0.060281873	1.5177522	308.44965	0	12.2387085						767	15	4	NaN	NaN	NaN	0.017076	1	8525	8525		75.698	23.074	1	293060			16321	4038	9489	9683	12891	12891					0.03742938211712499
LYPFAISLI	9	Unmodified	_LYPFAISLI_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.6077455787001	1	1036.60775	1035.60047	1.3814	0.001432	1.1453	0.0011873	2.5267	0.0026192	1036.6090496350714	37.455	0.096218	37.458	37.41	37.506	0.0028229	72	55	1.5758814	0.031792402	1.5743619	319.80423	0	6.4518433						87	5	2	NaN	NaN	NaN	0.042649	1	9825	9825		50.033	13.996	1	5278.7			16322	5678;276	9490	9684	12892	12892					0.08409289630867534
LYPFAISLI	9	Unmodified						0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1036.60775	1035.60047	0.98861	0.0010248	1.1022	0.0011426	2.0908	0.0021674	1036.6082820752915	37.458	0.096268	37.458	37.41	37.506	0	69	52	1.5776473	0.030024648	1.5776473	320.1626		6.0930786	-0.00016036	-2.1731E-05	0.0016427	NaN	50.033	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5950.1			16323	5678;276	9490	9684							0.08409289630867534
LYPFPLALF	9	Unmodified	_LYPFPLALF_					0	0	0		ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENSG00000166471|ENST00000528080|TMEM41B	ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENST00000524543.5_1_11:9304973-9316821:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.6128309565997	1	1080.61283	1079.60555	1.1919	0.001288	-0.7597	-0.00082095	0.43224	0.00046708	1080.6115503127473	42.672	0.1918	42.682	42.658	42.85	0.0097351	51	40	1.5882392	0.022945404	1.5867198	322.13937	0	4.653961						112	9	2	NaN	NaN	NaN	0.015198	1	11665	11665		78.076	33.444	1	6967.9			16324	4485	9491	9685	12893	12893					0.06893593493441585
LYPFPMVKPF	10	Unmodified	_LYPFPMVKPF_					0	0	0			REV__ENSG00000168152|ENST00000302236|THAP9	REV__ENSG00000168152|ENST00000302236|THAP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8357455333501	2	619.835746	1237.65694	0.6969	0.00043196	2.1292	0.0013197	2.8261	0.0017517	619.8368294779561	33.456	0.24121	33.456	33.407	33.648	0	1122	73	0.9460945	0.04402423	0.9460945	383.16623	0	17.829742						491	11	4	NaN	NaN	NaN	0.61246	1	17474	17474		14.042	3.4366	1	76860	+		16325	10499	9492	9686	12894	12894					0.047615941958611074
LYPFTGGYRR	10	Unmodified	_LYPFTGGYRR_					0	0	0		ENST00000261749.10_1_15:80352044-80390815:+|nuORF	ENST00000261749.10_1_15:80352044-80390815:+|nuORF	ENST00000261749.10_1_15:80352044-80390815:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3249222111001	2	615.324922	1228.63529	0.62178	0.0003826	4.4682	0.0027494	5.09	0.003132	615.3263779689909	31.959	0.072403	31.959	31.935	32.008	0	1140	28	0.93509084	0.01651001	0.93509084	378.74045	0	6.687042						41	4	2	NaN	NaN	NaN	0.76892	1	17220	17220		3.2116	0	1	4248.4			16326	6305	9493	9687	12895	12895					0.030119254915234706
LYPGATLFF	9	Unmodified	_LYPGATLFF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;nc|ENSG00000103502|O14735-2|CDIPT;ENST00000563893.5_1_16:29872371-29874522:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5451453219	1	1028.54515	1027.53787	1.1383	0.0011708	0.31428	0.00032325	1.4526	0.0014941	1028.5453385499025	34.299	0.14455	34.298	34.249	34.394	-0.0012474	135	91	1.5387528	0.053133607	1.5372335	312.3017	0	10.7838745						234	7	2	NaN	NaN	NaN	0.17818	1	9487	9487		26.732	6.1761	1	22230			16327	1446	9494	9688	12896	12896					0.02520143562674093
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5713600724	1	1024.57136	1023.56408	1.7175	0.0017597	-0.021253	-2.1775E-05	1.6962	0.0017379	1024.5715834463977	31.211	0.31373	31.211	31.139	31.452	0	144	151	1.533442	0.08849025	1.533442	311.23984	0	17.960693						999	14	4	NaN	NaN	NaN	0.02781	1	9523	9523		61.977	14.841	1	234370			16328	5884	9495	9689	12897	12897					0.05324412734148609
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;nc|ENSG00000204427|O95870-2|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.5871	0.0016261	0.24499	0.00025101	1.8321	0.0018771	1024.572033175081	31.21	0.36195	31.205	31.133	31.495	-0.0050716	144	160	1.533442	0.09381461	1.5319226	311.23984	0	19.041382						1111	16	4	NaN	NaN	NaN	0.02781	1	9345	9345		61.977	17.674	1	259510			16329	5884	9495	9689	12898	12898					0.05324412734148609
LYPHIDKQYL	10	Unmodified	_LYPHIDKQYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3480629564001	2	645.348063	1288.68157	1.9206	0.0012394	-3.6123	-0.0023312	-1.6917	-0.0010917	645.8460424737889	20.357	0.12045	20.343	20.295	20.415	-0.014141	1104	52	0.9570911	0.031155229	0.95557165	387.4505	0	12.612305						137	6	3	NaN	NaN	NaN	0.2504	1	17746	17746		31.198	16.773	1	9274.2			16330	8058	9496	9690	12899	12899					0.04877945602947875
LYPHLSTYW	9	Unmodified	_LYPHLSTYW_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2952991044	2	590.295299	1178.57605	1.9763	0.0011666	-2.1747	-0.0012837	-0.19836	-0.00011709	590.2945219305456	25.588	0.19301	25.588	25.491	25.684	0	1191	79	0.90387505	0.047790825	0.90387505	366.2698	0	19.365875						308	9	4	NaN	NaN	NaN	0.45297	1	15784	15784		11.548	1.8025	1	36082			16331	4122	9497	9691	12900	12900					-0.00609970522691583
LYPKEITLE	9	Unmodified	_LYPKEITLE_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3106148176001	2	553.310615	1104.60668	1.1224	0.00062103	8.4755	0.0046896	9.5978	0.0053106	553.3153792851791	27.422	0.2414	27.422	27.326	27.567	0	1227	73	0.88180584	0.044181406	0.88180584	357.60355	0	17.917114						242	11	4	NaN	NaN	NaN	0.21451	1	13053	13053		24.4	3.9516	1	35254			16332	5683	9498	9692	12901	12901					0.05855763071735964
LYPKSFLEL	9	Unmodified	_LYPKSFLEL_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.3157001955001	2	555.3157	1108.61685	1.1668	0.00064795	-0.84185	-0.00046749	0.32497	0.00018046	555.3151999762077	27.374	0.31382	27.374	27.277	27.591	0	1191	82	0.90387505	0.049653053	0.90387505	366.53708	0	20.135193						450	14	3	NaN	NaN	NaN	0.27608	1	13236	13236		20.449	3.8645	1	44532			16333	3462	9499	9693	12902	12902					0.06688370796950949
LYPKSFLEL	9	Unmodified						0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.3157	1108.61685	1.057	0.00058699	-0.53239	-0.00029564	0.52465	0.00029135	555.3154629189576	27.422	0.21718	27.411	27.242	27.46	-0.010126	1191	85	0.90387505	0.05148375	0.9023556	366.53708		20.877563	0.018717	0.00016869	-0.00075972	NaN	20.449	343	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33578			16334	3462	9499	9693							0.06688370796950949
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3442606697001	2	554.344261	1106.67397	1.1873	0.00065819	-5.616	-0.0031132	-4.4287	-0.002455	554.3402650686462	30.511	0.19307	30.511	30.439	30.632	0	1161	94	0.9222442	0.05692911	0.9222442	373.9942	0	23.086243						370	9	4	NaN	NaN	NaN	0.03533	1	13147	13147		53.14	10.823	1	104570			16335	3193	9500	9694	12903	12903					0.12489838073338433
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.3442606697001	2	554.344261	1106.67397	1.1402	0.00063208	-4.8018	-0.0026618	-3.6615	-0.0020298	554.3416215563763	30.534	0.19303	30.529	30.432	30.625	-0.0057545	1161	88	0.9222442	0.053256273	0.92072475	373.9942	0	21.596832						368	9	4	NaN	NaN	NaN	0.18779	1	12776	12776		26.115	8.316	1	94056			16336	3193	9500	9694	12904	12904					0.12489838073338433
LYPLLTYRI	9	Unmodified	_LYPLLTYRI_					0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.3447919859501	2	576.344792	1150.67503	1.5796	0.0009104	-3.6551	-0.0021066	-2.0755	-0.0011962	576.3423052469873	27.664	0.16889	27.664	27.591	27.76	0	1158	73	0.92408	0.04408604	0.92408	374.56235	0	17.869629						251	8	3	NaN	NaN	NaN	0.46215	1	14843	14843		11.17	1.5587	1	22873	+		16337	11384	9501	9695	12905	12905					0.1057205244223951
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.28968241025	2	566.289682	1130.56481	2.5315	0.0014336	-1.1336	-0.00064192	1.398	0.00079166	566.289378222437	30.222	0.28959	30.222	30.077	30.366	0	1188	121	0.90571284	0.07358003	0.90571284	367.1948	0	29.830872						1125	13	5	NaN	NaN	NaN	0.01452	1	14100	14100		79.199	9.8358	1	777240			16338	4520	9502	9696	12906	12906					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1131.5720883538997	1	1131.57209	1130.56481	0.80377	0.00090952	-0.1548	-0.00017517	0.64897	0.00073436	1131.5718913720839	30.245	0.14479	30.238	30.094	30.238	-0.0064106	57	136	1.5847093	0.079544306	1.5831898	321.24048	0	16.124634						321	7	2	NaN	NaN	NaN	2.6074E-07	1	13646	13646		131.88	67.327	1	64601			16339	4520	9502	9696	12907	12907					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.28968241025	2	566.289682	1130.56481	1.6611	0.00094066	-0.53778	-0.00030454	1.1233	0.00063613	566.2894980897444	30.221	0.31365	30.214	30.07	30.383	-0.0064106	1185	124	0.90755045	0.0754236	0.906031	367.9398	0	30.578308						1029	14	5	NaN	NaN	NaN	0.0084155	1	13647	13647		95.62	31.855	1	785740			16340	4520	9502	9696	12908	12908					0.00475207383169618
LYPMYWQHIYI	11	Unmodified	_LYPMYWQHIYI_					0	0	0		DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-3|DENND1B	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	DENND1B|p.K382Nfs*11|1|0.23|ENSG00000213047|chr1:197583155-197583155|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.8786729805502	2	763.878673	1525.74279	1.7799	0.0013596	-1.7278	-0.0013199	0.052062	3.9769E-05	763.8781395002851	22.163	0.21714	22.163	22.091	22.308	0	1008	40	1.0156195	0.023734927	1.0156195	410.46582	0	9.59256						254	10	3	NaN	NaN	NaN	0.67707	1	20657	20657		8.962	0	1	24287			16341	252	9503	9697	12909	12909					0.0009513431073173706
LYPNIDKDHAF	11	Unmodified	_LYPNIDKDHAF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.8909435108333	3	444.890944	1331.651	1.3279	0.00059078	-0.77018	-0.00034265	0.55774	0.00024813	444.8904749706896	19.66	0.21613	19.66	19.588	19.804	0	1434	46	0.75435036	0.027809858	0.75435036	457.90488	0	16.881104						248	10	3	NaN	NaN	NaN	0.58942	1	19280	19280		14.716	2.5661	1	34998			16342	2022	9504	9698	12910	12910					-0.0015583278209305718
LYPNIDKDHAF	11	Unmodified	_LYPNIDKDHAF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.83277703295	2	666.832777	1331.651	1.8119	0.0012083	-0.75872	-0.00050594	1.0532	0.00070233	666.8321404460171	19.66	0.19208	19.66	19.588	19.78	0	1083	37	0.9699114	0.021969438	0.9699114	392.50604	0	8.890625						235	9	3	NaN	NaN	NaN	0.10804	1	19281	19281		43.776	25.542	1	23546			16343	2022	9504	9698	12911	12911					-0.0015583278209305718
LYPNIDKDHAF	11	Unmodified	_LYPNIDKDHAF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.83277703295	2	666.832777	1331.651	1.6774	0.0011185	-0.82711	-0.00055155	0.85027	0.00056699	666.8320004515678	19.707	0.16844	19.693	19.621	19.789	-0.014141	1083	43	0.9699114	0.025633812	0.96839195	392.50604	0	10.373535						211	8	3	NaN	NaN	NaN	0.20822	1	18422	18422		32.377	5.0806	1	22814			16344	2022	9504	9698	12912	12912					-0.0015583278209305718
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3020698915001	2	598.30207	1194.58959	0.81505	0.00048764	-3.6416	-0.0021788	-2.8265	-0.0016911	598.3009879638389	31.477	0.36206	31.477	31.308	31.67	0	1167	85	0.91857195	0.051405966	0.91857195	372.1676	0	20.827576						670	16	4	NaN	NaN	NaN	0.098515	1	16291	16291		36.036	10.235	1	155040			16345	1314	9505	9699	12913	12913					7.563984922853706E-05
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3020698915001	2	598.30207	1194.58959	1.5719	0.0009405	-2.457	-0.00147	-0.88509	-0.00052955	598.300637968091	30.704	0.41023	30.704	30.56	30.97	0	1161	103	0.9222442	0.062414765	0.9222442	373.65543	0	25.287933						1295	18	6	NaN	NaN	NaN	0.02781	1	16296	16296		61.977	20.517	1	1607100			16346	1314	9505	9699	12914	12914					7.563984922853706E-05
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3020698915001	2	598.30207	1194.58959	0.59209	0.00035425	-2.8132	-0.0016832	-2.2211	-0.0013289	598.3010821581339	31.5	0.33786	31.495	31.302	31.64	-0.0044174	1164	79	0.9204082	0.047728956	0.91888875	372.91156	0	19.33783						560	15	3	NaN	NaN	NaN	0.13477	1	15660	15660		30.791	8.9561	1	148670			16347	1314	9505	9699	12915	12915					7.563984922853706E-05
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3020698915001	2	598.30207	1194.58959	1.7407	0.0010415	-1.8305	-0.0010952	-0.089815	-5.3737E-05	598.3009779806549	30.727	0.4826	30.722	30.505	30.987	-0.0057545	1158	121	0.92408	0.07345295	0.9225606	374.39923	0	29.760132						1558	21	7	NaN	NaN	NaN	0.056273	1	15664	15664		44.247	8.2106	1	1720700			16348	1314	9505	9699	12916	12916					7.563984922853706E-05
LYPQFMFHL	9	Unmodified						0	0	0		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.30207	1194.58959	0.85527	0.00051171	-1.2283	-0.00073492	-0.37307	-0.00022321	598.3011653978886	30.414	0.096514	30.407	30.311	30.407	-0.0064106	1152	49	0.92775106	0.029365301	0.9262317	375.8866		11.897644	-0.14851	0.0014347	0.0019937	NaN	61.977	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6742.8			16349	1314	9505	9699							7.563984922853706E-05
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(50)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.29952720255	2	606.299527	1210.5845	1.9809	0.001201	-2.4614	-0.0014923	-0.48042	-0.00029128	606.2977932693407	28.677	0.33784	28.677	28.605	28.943	0	1137	130	0.9369253	0.07894069	0.9369253	379.54633	0	31.978699						1186	15	6	NaN	NaN	NaN	0.042649	1	16733	16733		50.033	13.798	1	1569400			16350	1314	9505	9700	12917	12917		146			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(44)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.29952720255	2	606.299527	1210.5845	1.6939	0.001027	-2.1475	-0.001302	-0.45353	-0.00027498	606.298188115256	28.676	0.43436	28.668	28.572	29.006	-0.0083504	1137	133	0.9369253	0.08077216	0.93540585	379.54633	0	32.72061						1309	19	6	NaN	NaN	NaN	0.056273	1	16059	16059		44.247	15.58	1	1564000			16351	1314	9505	9700	12918	12918		146			-0.012367398777087146
LYPRDLWNF	9	Unmodified	_LYPRDLWNF_					0	0	0		ENST00000565833.1_1_17:62965520-62968715:-|nuORF;ENST00000430983.5_1_17:62964482-62968772:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.3140231738	2	612.314023	1222.61349	0.9186	0.00056247	-2.452	-0.0015014	-1.5334	-0.00093893	612.8141239423574	28.87	0.048239	28.87	28.87	28.918	0	1179	52	0.9112251	0.03122592	0.9112251	369.0943	0	12.648163						78	3	2	NaN	NaN	NaN	0.54912	1	17045	17045		7.5876	2.6779	1	14259			16352	6969	9506	9701	12919	12919					0.011091207429444694
LYPRNVRQYA	10	Unmodified	_LYPRNVRQYA_					0	0	0		ENSG00000188869|ENST00000359440|TMC3	ENSG00000188869|ENST00000359440|TMC3	ENSG00000188869|ENST00000359440|TMC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.3489286236502	2	640.348929	1278.6833	1.553	0.00099443	-1.2265	-0.00078537	0.32649	0.00020906	640.348632644965	29.738	0.072382	29.731	29.707	29.779	-0.0070648	1113	52	0.9515937	0.031161964	0.95007426	385.257	0	12.616089						129	4	3	NaN	NaN	NaN	0.69717	1	17580	17580		8.2448	0	1	16493			16353	5569	9507	9702	12920	12920					0.05510999411580997
LYPRNVRQYA	10	Unmodified						0	0	0		ENSG00000188869|ENST00000359440|TMC3	ENSG00000188869|ENST00000359440|TMC3	ENSG00000188869|ENST00000359440|TMC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	640.348929	1278.6833	1.7834	0.001142	-0.47986	-0.00030728	1.3036	0.00083475	640.3482963068661	29.739	0.096521	29.739	29.691	29.787	0	1110	55	0.95342636	0.032996833	0.95342636	385.99893		13.358917	0.0039714	0.00046037	0.001676	NaN	8.2448	131	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16212			16354	5569	9507	9702							0.05510999411580997
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.5877384181001	1	1109.58774	1108.58046	1.1922	0.0013229	-4.6641	-0.0051752	-3.4719	-0.0038523	1109.5813824282575	31.477	0.19307	31.477	31.38	31.573	0	87	94	1.5670487	0.054768085	1.5670487	317.73648	0	11.104828						482	9	4	NaN	NaN	NaN	0.010404	1	13231	13231		91.563	53.432	1	64874			16355	1349	9508	9703	12921	12921					0.030514939002614483
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1109.5877384181001	1	1109.58774	1108.58046	0.62097	0.00068902	-5.5117	-0.0061157	-4.8907	-0.0054267	1109.581987381376	31.476	0.24133	31.471	31.35	31.592	-0.0044155	87	88	1.5670487	0.05122924	1.5655292	317.73648	0	10.387299						457	11	3	NaN	NaN	NaN	0.012861	1	12855	12855		84.233	47.646	1	60060			16356	1349	9508	9703	12922	12922					0.030514939002614483
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.618310265	1	1066.61831	1065.61103	1.5447	0.0016476	0.88365	0.00094252	2.4284	0.0025902	1066.6188646654412	37.024	0.1927	37.024	36.952	37.145	0	60	82	1.582944	0.0476861	1.582944	321.1186	0	9.673676						408	9	4	NaN	NaN	NaN	0.014943	1	11380	11380		78.398	31.262	1	42560			16357	1642	9509	9704	12923	12923					0.08085272285279643
LYPSTLFLL	9	Unmodified						0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1066.61831	1065.61103	0.93268	0.00099481	0.4098	0.0004371	1.3425	0.0014319	1066.618778036623	37.022	0.16838	37.024	36.952	37.121	0.0022507	63	70	1.5811787	0.040612817	1.5796592	320.76044		8.23877	-5.3232E-05	-0.00033804	-0.0016424	NaN	78.398	306	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34137			16358	1642	9509	9704							0.08085272285279643
LYPVTVNMLF	10	Unmodified	_LYPVTVNMLF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.82283512335	2	598.822835	1195.63112	0.43742	0.00026193	-3.0899	-0.0018503	-2.6524	-0.0015883	598.821043447578	35.241	0.19301	35.241	35.192	35.385	0	1182	55	0.9093879	0.033071637	0.9093879	368.4429	0	13.399139						301	9	4	NaN	NaN	NaN	0.2358	1	16338	16338		32.453	11.939	1	50316			16359	3555	9510	9705	12924	12924					0.04112699953589072
LYPVTVNMLF	10	Unmodified	_LYPVTVNMLF_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.82283512335	2	598.822835	1195.63112	0.55053	0.00032967	-3.1718	-0.0018993	-2.6212	-0.0015697	598.8214100824281	35.239	0.169	35.239	35.191	35.36	-4.1962E-05	1179	58	0.9112251	0.034907043	0.90970564	369.1873	0	14.142792						304	8	4	NaN	NaN	NaN	0.37681	1	15694	15694		24.562	10.613	1	45128			16360	3555	9510	9705	12925	12925					0.04112699953589072
LYPVTVNMLF	10	Oxidation (M)	_LYPVTVNM(Oxidation (M))LF_		LYPVTVNM(1)LF		LYPVTVNM(78)LF	0	0	1		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.8202924344	2	606.820292	1211.62603	1.051	0.00063779	1.1638	0.00070623	2.2149	0.001344	606.8218329154372	32.056	0.21721	32.056	31.983	32.201	0	1197	85	0.9001988	0.051439285	0.9001988	364.66498	0	20.837738						518	10	4	NaN	NaN	NaN	0.004521	1	16766	16766		78.289	40.159	1	110740			16361	3555	9510	9706	12926	12926		399			0.028683960909575035
LYPVVSAVW	9	Unmodified	_LYPVVSAVW_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4;ENSG00000171621|ENST00000328089|SPSB1	ENSG00000175093|ENST00000310546|SPSB4;ENSG00000171621|ENST00000328089|SPSB1	ENSG00000175093|ENST00000310546|SPSB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5716944234	1	1033.57169	1032.56442	1.083	0.0011193	-3.2779	-0.0033879	-2.1949	-0.0022686	1033.567951160932	31.646	0.21725	31.646	31.573	31.79	0	159	106	1.5245869	0.06203842	1.5245869	309.40668	0	12.590363						386	10	4	NaN	NaN	NaN	0.021781	1	9893	9893		69.745	30.827	1	44575			16362	4977;4800	9511	9707	12927	12927					0.04943832454000585
LYPYFVIKS	9	Unmodified	_LYPYFVIKS_					0	0	0			REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.31824288445	2	565.318243	1128.62193	1.0458	0.00059122	7.2827	0.004117	8.3285	0.0047083	565.3215436414862	28.266	0.19307	28.257	28.161	28.354	-0.0089779	1188	88	0.90571284	0.05330801	0.9041934	367.20236	0	21.61264						286	9	3	NaN	NaN	NaN	0.31737	1	13602	13602		17.799	4.7961	1	44966	+		16363	11831	9512	9708	12928	12928					0.06276674659557102
LYPYFVIKS	9	Unmodified						0	0	0			REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.318243	1128.62193	2.0929	0.0011832	7.4986	0.0042391	9.5915	0.0054223	565.3223082714333	28.243	0.19304	28.243	28.146	28.339	0	1191	70	0.90387505	0.042251408	0.90387505	366.45728		17.129944	-0.0072215	6.6677E-05	-0.00015919	NaN	17.799	336	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48555	+		16364	11831	9512	9708							0.06276674659557102
LYPYFVIKS	9	Unmodified						0	0	0			REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.318243	1128.62193	1.0458	0.00059122	7.2827	0.004117	8.3285	0.0047083	565.3215436414862	28.266	0.19307	28.257	28.161	28.354	-0.0089779	1188	88	0.90571284	0.05330801	0.9041934	367.20236		21.61264	0.0072215	-0.00017746	0.00015919	NaN	17.799	286	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44966	+		16365	11831	9512	9708							0.06276674659557102
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7898495857501	2	558.78985	1115.56515	1.9639	0.0010974	-0.26399	-0.00014751	1.6999	0.00094987	558.7909137799667	25.346	0.16889	25.346	25.298	25.467	0	1230	94	0.8799654	0.057039917	0.8799654	356.81403	0	23.128906						405	8	4	NaN	NaN	NaN	0.028569	1	13500	13500		60.984	16.345	1	96688			16366	4517	9513	9709	12929	12929					0.011986271030536955
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	ENST00000514047.1_1_5:24170479-24171004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7898495857501	2	558.78985	1115.56515	1.9073	0.0010658	2.8852	0.0016122	4.7924	0.002678	558.7922005082896	25.346	0.21709	25.334	25.238	25.455	-0.012011	1233	73	0.87812483	0.044176638	0.8766054	356.0677	0	17.912994						244	8	2	NaN	NaN	NaN	0.026443	1	13113	13113		63.765	22.305	1	90512			16367	4517	9513	9709	12930	12930					0.011986271030536955
LYQDHMQYI	9	Oxidation (M)	_LYQDHM(Oxidation (M))QYI_		LYQDHM(1)QYI		LYQDHM(42)QYI	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.7791559012	2	613.779156	1225.54376	1.5451	0.00094838	-0.7767	-0.00047672	0.76844	0.00047165	613.7787789633785	18.101	0.19189	18.101	18.053	18.245	0	1131	40	0.94059354	0.023842633	0.94059354	380.97992	0	9.657257						223	9	3	NaN	NaN	NaN	0.061945	1	17113	17113		41.839	12.24	1	28302			16368	1950	9514	9710	12931	12931		219			-0.059991259879780046
LYQDHMQYI	9	Unmodified	_LYQDHMQYI_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.7816985901501	2	605.781699	1209.54884	0.50885	0.00030825	-0.59004	-0.00035743	-0.081185	-4.9181E-05	605.781766483206	20.911	0.14447	20.897	20.849	20.993	-0.014086	1128	40	0.9424274	0.02384001	0.94090796	381.7789	0	9.657623						190	7	4	NaN	NaN	NaN	0.059222	1	16039	16039		42.995	6.4083	1	23908			16369	1950	9514	9711	12932	12932					-0.04754822125346436
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.80549964995	2	602.8055	1203.59645	1.5928	0.00096014	3.8261	0.0023064	5.4189	0.0032665	602.8084790811437	29.498	0.28966	29.498	29.449	29.739	0	1170	97	0.91673553	0.058743358	0.91673553	371.39178	0	23.79837						853	13	3	NaN	NaN	NaN	0.017558	1	16580	16580		75.089	43.891	1	296850			16370	3460	9515	9712	12933	12933					0.002792001371290098
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.80549964995	2	602.8055	1203.59645	1.2013	0.00072413	5.9107	0.003563	7.112	0.0042871	602.8097468600621	29.521	0.38608	29.514	29.369	29.755	-0.0070648	1167	100	0.91857195	0.06058234	0.9170525	372.13574	0	24.543365						1202	17	5	NaN	NaN	NaN	0.015029	1	15927	15927		78.289	43.851	1	342020			16371	3460	9515	9712	12934	12934					0.002792001371290098
LYQDQILEKF	10	Unmodified	_LYQDQILEKF_					0	0	0		ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.8453530919501	2	648.845353	1295.67615	1.7308	0.001123	-3.2613	-0.0021161	-1.5305	-0.00099306	648.8431242544783	25.081	0.096518	25.081	25.057	25.153	0	1101	46	0.95892316	0.02748102	0.95892316	388.16992	0	11.124237						148	5	3	NaN	NaN	NaN	0.036001	1	18702	18702		57.081	23.656	1	26133			16372	829	9516	9713	12935	12935					0.04014222020464331
LYQDQILEKF	10	Unmodified	_LYQDQILEKF_					0	0	0		ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8453530919501	2	648.845353	1295.67615	1.5204	0.00098649	-3.1368	-0.0020353	-1.6164	-0.0010488	648.8432029955325	25.081	0.12062	25.069	25.045	25.165	-0.012011	1104	43	0.9570911	0.02564758	0.95557165	387.4283	0	10.38208						167	6	4	NaN	NaN	NaN	0.017132	1	17865	17865		64.873	17.448	1	25598			16373	829	9516	9713	12936	12936					0.04014222020464331
LYQEIIHYF	9	Unmodified	_LYQEIIHYF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3162315117501	2	613.316232	1224.61791	1.2111	0.0007428	-0.70333	-0.00043136	0.50779	0.00031144	613.3160670512074	27.519	0.2896	27.519	27.422	27.712	0	1173	121	0.91489893	0.073437154	0.91489893	370.57562	0	29.745392						684	13	4	NaN	NaN	NaN	0.0068607	1	17092	17092		113.18	57.77	1	211620			16374	3714	9517	9714	12937	12937					0.014585851658466709
LYQEIIHYF	9	Unmodified	_LYQEIIHYF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3162315117501	2	613.316232	1224.61791	0.93358	0.00057258	-1.4474	-0.00088769	-0.51378	-0.00031511	613.3155304035096	27.542	0.16893	27.533	27.484	27.653	-0.0095501	1173	100	0.91489893	0.060569286	0.9133795	370.57562	0	24.533325						574	8	5	NaN	NaN	NaN	0.020011	1	16407	16407		81.699	48.274	1	203180			16375	3714	9517	9714	12938	12938					0.014585851658466709
LYQEILAQL	9	Unmodified	_LYQEILAQL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.8107819931	2	545.810782	1089.60701	1.1105	0.00060613	7.5754	0.0041347	8.6859	0.0047409	545.8144385278885	30.824	0.072344	30.818	30.746	30.818	-0.0057564	1209	154	0.892844	0.09360719	0.8913246	362.14133	0	37.96747						164	4	2	NaN	NaN	NaN	0.32672	1	12084	12084		24.562	4.1134	1	27913			16376	3364	9518	9715	12939	12939					0.0657918279155183
LYQEKRKLAD	10	Unmodified	_LYQEKRKLAD_					0	0	0			REV__sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	REV__sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3564193047501	2	632.356419	1262.69829	1.2223	0.00077292	5.6278	0.0035588	6.8501	0.0043317	632.3605070813695	37.506	0.2167	37.506	37.434	37.65	0	1254	52	0.8652351	0.031317174	0.8652351	350.34167	0	12.680603						476	10	6	NaN	NaN	NaN	0.77513	1	18066	18066		1.7022	0.19679	1	143300	+		16377	13337	9519	9716	12940	12940					0.07744446488914036
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8085736551501	2	562.808574	1123.60259	1.5468	0.00087055	-1.4053	-0.00079093	0.14148	7.9628E-05	562.8082491378323	24.647	0.07235	24.647	24.598	24.671	0	1188	40	0.90571284	0.023891509	0.90571284	367.2222	0	9.686859						84	4	2	NaN	NaN	NaN	0.048656	1	13836	13836		47.482	15.029	1	25284			16378	937	9520	9717	12941	12941					0.04573718368669688
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8085736551501	2	562.808574	1123.60259	1.2149	0.00068378	-0.651	-0.00036639	0.56394	0.00031739	562.8080147570386	24.647	0.072338	24.634	24.586	24.658	-0.012394	1188	40	0.90571284	0.023891509	0.9041934	367.2222	0	9.686829						70	4	2	NaN	NaN	NaN	0.11656	1	13407	13407		33.425	14.262	1	20041			16379	937	9520	9717	12942	12942					0.04573718368669688
LYQEYNFSKAE	11	Unmodified	_LYQEYNFSKAE_					0	0	0		ENSG00000100814|ENST00000358932|CCNB1IP1	ENSG00000100814|ENST00000358932|CCNB1IP1	ENSG00000100814|ENST00000358932|CCNB1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.55410847523336	3	464.554108	1390.6405	1.2834	0.00059621	7.5524	0.0035085	8.8358	0.0041047	464.89068135847947	25.346	0.048271	25.346	25.346	25.395	0	1416	64	0.76547134	0.038912714	0.76547134	464.45328	0	23.610474						112	3	3	NaN	NaN	NaN	0.77278	1	19988	19988		0.43218	0	1	9688			16380	1276	9521	9718	12943	12943					-0.0391986022718811
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1146.5618580185999	1	1146.56186	1145.55458	2.4821	0.0028458	2.3312	0.0026728	4.8132	0.0055187	1147.56775495641	32.78	0.19306	32.78	32.756	32.949	0	57	127	1.5847093	0.07422161	1.5847093	321.18973	0	15.043274						385	9	3	NaN	NaN	NaN	0.018156	1	14643	14643		74.332	51.214	1	77410			16381	5137	9522	9719	12944	12944					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1146.5618580185999	1	1146.56186	1145.55458	1.8847	0.0021609	4.3225	0.004956	6.2072	0.0071169	1146.5666974195765	32.755	0.12064	32.752	32.752	32.872	-0.0031013	57	127	1.5847093	0.07422161	1.5831898	321.18973	0	15.043274						369	6	3	NaN	NaN	NaN	0.0023856	1	14160	14160		109.86	77.405	1	61737			16382	5137	9522	9719	12945	12945					-0.012373555513931933
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8060309662	2	588.806031	1175.59751	1.6939	0.00099738	-3.104	-0.0018276	-1.41	-0.00083025	588.8043113822873	24.647	0.21713	24.647	24.598	24.816	0	1191	58	0.90387505	0.034914613	0.90387505	366.28055	0	14.14859						367	10	4	NaN	NaN	NaN	0.01966	1	15668	15668		72.428	17.015	1	141630			16383	2041	9523	9720	12946	12946					0.016734145060127048
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8060309662	2	588.806031	1175.59751	1.2937	0.00076176	-2.9128	-0.0017151	-1.619	-0.0009533	588.8043395625598	24.671	0.21706	24.658	24.61	24.827	-0.012392	1191	61	0.90387505	0.036750257	0.9023556	366.28055	0	14.892456						430	10	4	NaN	NaN	NaN	0.013696	1	15099	15099		81.699	34.218	1	139780			16384	2041	9523	9720	12947	12947					0.016734145060127048
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3500743291	2	597.350074	1192.6856	1.6459	0.00098318	-4.2352	-0.0025299	-2.5893	-0.0015467	597.3487472341423	36.35	0.048206	36.35	36.35	36.398	0	1173	22	0.91489893	0.012856305	0.91489893	370.6862	0	5.208954						25	3	2	NaN	NaN	NaN	0.75966	1	16235	16235		3.9685	0.39873	1	1418.9			16385	4721	9524	9721	12948	12948					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3500743291	2	597.350074	1192.6856	1.3364	0.0007983	-2.9999	-0.001792	-1.6635	-0.00099367	597.3481506169815	36.157	0.24115	36.157	36.085	36.326	0	1179	64	0.9112251	0.038569033	0.9112251	369.19766	0	15.626892						462	11	5	NaN	NaN	NaN	0.019347	1	16236	16236		63.958	26.656	1	164810			16386	4721	9524	9721	12949	12949					0.09696035096658306
LYQILQGIVF	10	Unmodified	_LYQILQGIVF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3500743291	2	597.350074	1192.6856	1.2697	0.00075847	-2.6482	-0.0015819	-1.3784	-0.00082341	597.3485263618696	36.155	0.24095	36.157	36.108	36.349	0.0011024	1179	67	0.9112251	0.040403485	0.90970564	369.19766	0	16.370148						442	11	5	NaN	NaN	NaN	0.019347	1	15618	15618		63.958	31.505	1	156780			16387	4721	9524	9721	12950	12950					0.09696035096658306
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.2326410236667	3	399.232641	1194.67609	1.3565	0.00054156	-2.4543	-0.00097985	-1.0978	-0.00043829	399.23149430182144	21.657	0.19269	21.657	21.633	21.826	0	1452	43	0.74322224	0.025974154	0.74322224	451.6799	0	15.785339						199	9	4	NaN	NaN	NaN	0.024221	1	16309	16309		58.769	17.813	1	37968			16388	3242	9525	9722	12951	12951					0.08654266811140587
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3453233022001	2	598.345323	1194.67609	1.4065	0.00084158	-1.1961	-0.00071566	0.21043	0.00012591	598.344005812778	21.657	0.12046	21.657	21.633	21.754	0	1110	49	0.95342636	0.029327333	0.95342636	386.28885	0	11.882233						176	6	3	NaN	NaN	NaN	0.028404	1	16310	16310		61.199	10.884	1	32140			16389	3242	9525	9722	12952	12952					0.08654266811140587
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3453233022001	2	598.345323	1194.67609	1.0242	0.00061283	-0.84162	-0.00050358	0.1826	0.00010926	598.3446610897465	21.753	0.14442	21.74	21.667	21.812	-0.013895	1110	40	0.95342636	0.023824632	0.9519069	386.28885	0	9.6527405						191	7	3	NaN	NaN	NaN	0.059222	1	15672	15672		42.995	11.434	1	33921			16390	3242	9525	9722	12953	12953					0.08654266811140587
LYQKDFLRI	9	Unmodified						0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	399.232641	1194.67609	1.2985	0.0005184	-0.60863	-0.00024299	0.68986	0.00027541	399.23249486127713	21.729	0.16849	21.715	21.667	21.836	-0.013897	1449	43	0.74507743	0.025971413	0.743558	452.80737		15.78363	0.029134	0.0010454	0.00016788	NaN	58.769	205	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33077			16391	3242	9525	9722							0.08654266811140587
LYQPAMPSKM	10	Unmodified	_LYQPAMPSKM_					0	0	0			REV__ENST00000472644.6_3_3:105238940-105243229:+|nuORF	REV__ENST00000472644.6_3_3:105238940-105243229:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.2908448907	2	583.290845	1164.56714	1.6559	0.00096584	-3.2569	-0.0018997	-1.601	-0.00093385	583.7892460497161	26.964	0.072346	26.964	26.964	27.036	0	1206	88	0.894683	0.05330801	0.894683	362.59546	0	21.604584						142	4	2	NaN	NaN	NaN	0.507	1	15297	15297		19.164	0.93009	1	41490	+		16392	12331	9526	9723	12954	12954					-0.008564034750179417
LYQPLGPV	8	Unmodified	_LYQPLGPV_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-4|THADA	REV__nc|ENSG00000115970|Q6YHU6-4|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.75527848690007	2	443.755278	885.496004	1.3156	0.0005838	6.9402	0.0030797	8.2558	0.0036635	443.75845655532385	25.322	0.0965	25.322	25.298	25.395	0	1371	61	0.79324204	0.036985517	0.79324204	322.6667	0	15.044586						114	5	3	NaN	NaN	NaN	0.57691	1	5882	5882		26.732	4.6052	1	16330	+		16393	9206	9527	9724	12955	12955					0.048675878741505585
LYQQSRAYVA	10	Unmodified	_LYQQSRAYVA_					0	0	0		ENSG00000119559|ENST00000585675|C19orf25;nc|nan|Q9UFG5-2|C19orf25;ENST00000592486.1_1_19:1475033-1475351:-|nuORF	ENSG00000119559|ENST00000585675|C19orf25	ENSG00000119559|ENST00000585675|C19orf25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8143873145501	2	599.814387	1197.61422	1.7033	0.0010216	5.5971	0.0033572	7.3004	0.0043789	599.8182004710029	23.176	0.14468	23.176	23.128	23.272	0	1116	64	0.94976085	0.0384984	0.94976085	384.7929	0	15.597504						157	7	3	NaN	NaN	NaN	0.77513	1	16401	16401		1.7022	0.37103	1	16505			16394	2219	9528	9725	12956	12956					0.023319153920056124
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3196398679501	2	588.31964	1174.62473	1.8731	0.001102	-1.7806	-0.0010476	0.0925	5.4419E-05	588.3185652683408	17.069	0.12007	17.069	17.045	17.165	0	1131	40	0.94059354	0.02384001	0.94059354	381.1638	0	9.660858						177	6	4	NaN	NaN	NaN	0.030669	1	15641	15641		58.235	26.674	1	22847			16395	6112	9529	9726	12957	12957					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.3196398679501	2	588.31964	1174.62473	1.5454	0.00090917	-1.2322	-0.00072495	0.31311	0.00018421	588.3189524679152	17.258	0.23981	17.244	17.172	17.412	-0.013567	1128	37	0.9424274	0.022005022	0.94090796	381.90692	0	8.917236						217	11	3	NaN	NaN	NaN	0.025843	1	15080	15080		64.55	35.654	1	23010			16396	6112	9529	9726	12958	12958					0.0443994283707525
LYRCPACGET	10	Unmodified	_LYRCPACGET_					0	0	0		nc|ENSG00000038295|O43897-2|TLL1;ENSG00000038295|ENST00000061240|TLL1	nc|ENSG00000038295|O43897-2|TLL1	nc|ENSG00000038295|O43897-2|TLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.7468015278	2	556.746802	1111.47905	1.1181	0.00062252	6.3508	0.0035358	7.4689	0.0041583	557.2503329073535	27.133	0.19301	27.133	27.109	27.302	0	1251	61	0.8670771	0.03682977	0.8670771	351.60373	0	14.934631						185	9	3	NaN	NaN	NaN	0.73444	1	13328	13328		5.6942	1.384	1	15632			16397	519	9530	9727	12959	12959					-0.07223024065638128
LYRDAIRF	8	Unmodified	_LYRDAIRF_					0	0	0		nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2956334554001	2	527.295633	1052.57671	1.3577	0.0007159	2.0968	0.0011056	3.4545	0.0018215	527.2966110528058	24.719	0.12064	24.719	24.695	24.816	0	1251	55	0.8670771	0.03315395	0.8670771	351.84464	0	13.453308						136	5	3	NaN	NaN	NaN	0.5868	1	10753	10753		26.115	3.9886	1	21105			16398	2531	9531	9728	12960	12960					0.052528689170458165
LYRDAIRF	8	Unmodified						0	0	0		nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.295633	1052.57671	0.99807	0.00052628	4.4026	0.0023215	5.4007	0.0028478	527.2973073751907	24.743	0.193	24.731	24.707	24.9	-0.012394	1251	73	0.8670771	0.044190943	0.8655577	351.84464		17.931915	0.005804	0.0012464	-0.00075972	NaN	26.115	116	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16516			16399	2531	9531	9728							0.052528689170458165
LYRDIFQHL	9	Unmodified	_LYRDIFQHL_					0	0	0		ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.22062397189995	3	402.220624	1203.64004	1.6364	0.00065818	-1.8985	-0.00076361	-0.26211	-0.00010543	402.2197023870311	23.031	0.12039	23.017	22.969	23.09	-0.013294	1464	37	0.73579943	0.022273242	0.73428	447.13086	0	13.535034						84	6	2	NaN	NaN	NaN	0.23499	1	15931	15931		16.659	3.0212	1	7165.1			16400	2375	9532	9729	12961	12961					0.04636809634257588
LYREARECLTL	11	Unmodified	_LYREARECLTL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.24309985130003	3	456.2431	1365.70747	1.1638	0.00053099	6.6185	0.0030196	7.7823	0.0035506	456.2464153718973	20.574	0.096287	20.559	20.511	20.608	-0.014086	1338	31	0.81357855	0.018478692	0.8120591	493.73114	0	11.21405						79	5	2	NaN	NaN	NaN	0.64656	1	18831	18831		5.5374	0.91996	1	7278			16401	4877	9533	9730	12962	12962					0.03924471782920591
LYREARECLTL	11	Unmodified						0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	456.2431	1365.70747	0.83691	0.00038183	5.0221	0.0022913	5.8591	0.0026732	456.2447506755091	20.429	0.0721	20.429	20.405	20.477	0	1341	31	0.8117308	0.018476725	0.8117308	492.6098		11.21286	-0.065197	-0.0011738	-0.00016417	NaN	5.5374	87	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9456.5			16402	4877	9533	9730							0.03924471782920591
LYREKFHEK	9	Unmodified	_LYREKFHEK_					0	0	0		ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.22777854643334	3	417.227779	1248.66151	1.9736	0.00082342	-3.7119	-0.0015487	-1.7384	-0.00072529	417.22608438578044	13.925	0.16802	13.925	13.853	14.021	0	1440	52	0.7506418	0.031538427	0.7506418	455.96414	0	19.15741						104	8	2	NaN	NaN	NaN	0.33629	1	17748	17748		10.965	3.1612	1	10601			16403	5149	9534	9731	12963	12963					0.047121946629886224
LYREKFHEK	9	Unmodified	_LYREKFHEK_					0	0	0		ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.22777854643334	3	417.227779	1248.66151	1.5338	0.00063994	3.8214	0.0015944	5.3552	0.0022343	417.229188961634	14.596	0.095807	14.585	14.561	14.657	-0.011219	1440	28	0.7506418	0.016691387	0.7491224	455.9641	0	10.1388855						52	5	2	NaN	NaN	NaN	0.39244	1	17000	17000		8.9191	3.6344	1	3758.6			16404	5149	9534	9731	12964	12964					0.047121946629886224
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3374982701	2	615.337498	1228.66044	1.1112	0.00068376	-1.5406	-0.00094798	-0.42938	-0.00026422	615.3375084319495	22.501	0.072268	22.501	22.477	22.549	0	1077	34	0.9735726	0.020135403	0.9735726	394.32666	0	8.155457						90	4	3	NaN	NaN	NaN	0.60102	1	17223	17223		8.962	4.0522	1	7228.3			16405	5532	9535	9732	12965	12965					0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.5607576689333	3	410.560758	1228.66044	1.3904	0.00057085	-2.678	-0.0010995	-1.2876	-0.00052864	410.56032186911557	22.669	0.072355	22.655	22.583	22.655	-0.01354	1482	40	0.72465914	0.024143755	0.7231397	440.25967	0	14.668335						64	4	2	NaN	NaN	NaN	0.53237	1	16515	16515		8.2775	5.6781	1	6432			16406	5532	9535	9732	12966	12966					0.05525980294078181
LYRLKFNEF	9	Unmodified						0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	615.337498	1228.66044	1.2166	0.00074862	-2.0664	-0.0012715	-0.84975	-0.00052288	615.8382614879847	22.669	0.14472	22.655	22.583	22.728	-0.01354	1077	28	0.9735726	0.016474426	0.9720532	394.32666		6.672638	0.077343	-0.00035746	-0.00075972	NaN	8.962	74	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5226.7			16407	5532	9535	9732							0.05525980294078181
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3193055169501	2	615.319306	1228.62406	1.8928	0.0011647	-0.956	-0.00058825	0.93678	0.00057642	615.3187040616582	26.119	0.2896	26.119	25.998	26.288	0	1140	91	0.93509084	0.05507189	0.93509084	378.7405	0	22.305786						615	13	5	NaN	NaN	NaN	0.0012818	1	17214	17214		113.18	65.702	1	298160			16408	2334	9536	9733	12967	12967					0.018891033973659432
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3193055169501	2	615.319306	1228.62406	1.8279	0.0011247	-0.62116	-0.00038221	1.2067	0.00074252	615.3192344729367	26.143	0.3378	26.131	26.083	26.421	-0.011137	1140	79	0.93509084	0.04771352	0.9335714	378.7405	0	19.32544						575	15	4	NaN	NaN	NaN	0.010404	1	16513	16513		91.563	51.409	1	290020			16409	2334	9536	9733	12968	12968					0.018891033973659432
LYRMKMLQ	8	Unmodified	_LYRMKMLQ_					0	0	0			REV__nc|ENSG00000100353|O15371-2|EIF3D	REV__nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7960974441002	2	541.796097	1081.57764	2.1365	0.0011575	2.2387	0.0012129	4.3752	0.0023705	541.8006821638278	25.757	0.31367	25.757	25.66	25.974	0	1218	100	0.8873258	0.06075275	0.8873258	359.9365	0	24.64383						365	14	3	NaN	NaN	NaN	0.40747	1	12060	12060		36.036	6.438	1	62445	+		16410	8812	9537	9734	12969	12969					0.04011623970086475
LYRQYFEEI	9	Unmodified	_LYRQYFEEI_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.8165956525	2	630.816596	1259.61864	1.9844	0.0012518	-1.2506	-0.0007889	0.73381	0.0004629	630.8158269151793	23.32	0.19297	23.32	23.296	23.489	0	1113	100	0.9515937	0.060530066	0.9515937	385.31927	0	24.509827						284	9	3	NaN	NaN	NaN	0.041983	1	17989	17989		50.315	21.82	1	33845			16411	2399	9538	9735	12970	12970					-0.0007862018510422786
LYRQYFEEI	9	Unmodified	_LYRQYFEEI_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.8165956525	2	630.816596	1259.61864	1.7264	0.001089	1.0302	0.00064985	2.7565	0.0017389	630.816854286906	23.368	0.19307	23.355	23.331	23.524	-0.013294	1107	97	0.9552588	0.058686316	0.9537394	386.80334	0	23.763275						289	9	4	NaN	NaN	NaN	0.14787	1	17217	17217		28.896	12.67	1	25830			16412	2399	9538	9735	12971	12971					-0.0007862018510422786
LYRTTFVL	8	Unmodified	_LYRTTFVL_					0	0	0			REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF	REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5825934607002	1	1012.58259	1011.57532	1.3173	0.0013339	-9.936	-0.010061	-8.6187	-0.0087271	1012.5715864145392	35.263	0.072403	35.263	35.239	35.312	-4.5776E-05	135	58	1.5387528	0.033631682	1.5372335	312.367	0	6.82724						96	4	2	NaN	NaN	NaN	0.69898	1	8887	8887		19.118	2.5342	1	8781.3	+		16413	8792	9539	9736	12972	12972					0.06999234828288081
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7691141436501	2	554.769114	1107.52368	1.5343	0.0008512	-0.08903	-4.9391E-05	1.4453	0.00080181	554.7688535369836	23.73	0.16865	23.73	23.658	23.827	0	1242	82	0.87260187	0.04972291	0.87260187	353.85956	0	20.163757						326	8	4	NaN	NaN	NaN	0.049695	1	13163	13163		47.04	15.479	1	79117			16414	3424	9540	9737	12973	12973					-0.025785536562807465
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7691141436501	2	554.769114	1107.52368	1.7452	0.00096817	-1.0896	-0.00060448	0.65557	0.00036369	554.7680141625825	23.754	0.21684	23.741	23.621	23.837	-0.013048	1242	79	0.87260187	0.047878683	0.8710824	353.85956	0	19.415894						362	10	4	NaN	NaN	NaN	0.023074	1	12793	12793		68.108	18.147	1	79414			16415	3424	9540	9737	12974	12974					-0.025785536562807465
LYSEVSHLL	9	Unmodified	_LYSEVSHLL_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7873068968001	2	530.787307	1059.56006	1.6041	0.00085142	-1.3618	-0.0007228	0.24231	0.00012862	530.787118925086	23.971	0.12061	23.971	23.947	24.068	0	1236	46	0.876284	0.027617872	0.876284	355.5504	0	11.205872						100	6	2	NaN	NaN	NaN	0.23112	1	11074	11074		23.334	5.5355	1	12091			16416	4314	9541	9738	12975	12975					0.032663232404502196
LYSEVSHLL	9	Unmodified						0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.787307	1059.56006	1.0638	0.00056468	2.7794	0.0014752	3.8432	0.0020399	531.29216637989	24.019	0.12061	24.006	23.958	24.079	-0.012747	1239	88	0.87444305	0.053434968	0.8729236	354.8034		21.681091	0.017643	0.0027994	-0.0016802	NaN	23.334	167	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16053			16417	4314	9541	9738							0.032663232404502196
LYSFEFNGEFI	11	Unmodified	_LYSFEFNGEFI_					0	0	0			REV__tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	REV__tr|U7SUB0|U7SUB0_FUSNUAlpha-ribazolephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01084PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3217108201501	2	683.321711	1364.62887	1.2972	0.00088638	1.0789	0.00073722	2.376	0.0016236	683.3234318007335	29.087	0.14479	29.079	29.031	29.175	-0.0077229	1065	88	0.9808926	0.053084254	0.97937316	396.85138	0	21.476929						304	7	5	NaN	NaN	NaN	0.65577	1	18818	18818		10.36	0.74852	1	49043	+		16418	13512	9542	9739	12976	12976					-0.03886057250520025
LYSGVFVAF	9	Unmodified	_LYSGVFVAF_					0	0	0		ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000236067.8_1_1:44440634-44441766:+|nuORF;ENST00000468183.5_1_1:44440655-44441072:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5294952577001	1	1002.5295	1001.52222	1.6798	0.001684	-4.1249	-0.0041353	-2.4451	-0.0024513	1002.524121129214	32.78	0.28961	32.78	32.732	33.021	0	210	112	1.4944444	0.06568098	1.4944444	303.4133	0	13.3350525						567	13	4	NaN	NaN	NaN	0.024986	1	8655	8655		65.672	24.212	1	149040			16419	2141	9543	9740	12977	12977					0.021518570456123598
LYSGVFVAF	9	Unmodified	_LYSGVFVAF_					0	0	0		ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000236067.8_1_1:44440634-44441766:+|nuORF;ENST00000468183.5_1_1:44440655-44441072:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	ENST00000496131.1_1_1:44440655-44442052:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5294952577001	1	1002.5295	1001.52222	1.4859	0.0014896	-4.3066	-0.0043175	-2.8207	-0.0028279	1002.5243732982995	32.779	0.24128	32.776	32.727	32.969	-0.0031052	207	118	1.496219	0.069224	1.4946996	303.7736	0	14.054352						613	11	4	NaN	NaN	NaN	0.011118	1	8482	8482		89.521	42.385	1	149590			16420	2141	9543	9740	12978	12978					0.021518570456123598
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7873068968	2	578.787307	1155.56006	2.3059	0.0013346	0.56654	0.0003279	2.8725	0.0016625	578.7873568519781	26.239	0.1448	26.239	26.191	26.336	0	1185	67	0.90755045	0.040442765	0.90755045	367.8439	0	16.39206						257	7	5	NaN	NaN	NaN	0.062072	1	15009	15009		41.785	13.996	1	60375			16421	1015	9544	9741	12979	12979					-0.01149676759587237
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7873068968	2	578.787307	1155.56006	1.7892	0.0010355	0.3445	0.00019939	2.1337	0.0012349	578.7872293371752	26.263	0.14476	26.252	26.204	26.349	-0.011137	1185	64	0.90755045	0.03859818	0.906031	367.8439	0	15.64444						270	7	4	NaN	NaN	NaN	0.16171	1	14506	14506		27.789	9.8191	1	65118			16422	1015	9544	9741	12980	12980					-0.01149676759587237
LYSIRYDLR	9	Unmodified	_LYSIRYDLR_					0	0	0			REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8325800677	2	599.83258	1197.65061	0.68981	0.00041377	-8.0432	-0.0048246	-7.3534	-0.0044108	599.8277162476087	27.759	0.12065	27.75	27.702	27.822	-0.009552	1146	58	0.93142134	0.034869432	0.9299019	377.36267	0	14.127258						166	6	3	NaN	NaN	NaN	0.56671	1	15757	15757		6.8632	0	1	18901	+		16423	8761	9545	9742	12981	12981					0.059687922886723754
LYSIRYDLR	9	Unmodified						0	0	0			REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.83258	1197.65061	1.2562	0.00075353	-9.0269	-0.0054146	-7.7707	-0.0046611	599.8273746274526	27.712	0.12067	27.712	27.688	27.808	0	1149	55	0.92958635	0.033035994	0.92958635	376.6192		13.38443	-0.018958	-0.00057299	-0.0001578	NaN	6.8632	157	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18202	+		16424	8761	9545	9742							0.059687922886723754
LYSIRYDLR	9	Unmodified						0	0	0			REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	REV__ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.83258	1197.65061	0.68981	0.00041377	-8.0432	-0.0048246	-7.3534	-0.0044108	599.8277162476087	27.759	0.12065	27.75	27.702	27.822	-0.009552	1146	58	0.93142134	0.034869432	0.9299019	377.36267		14.127258	0.018958	0.00060716	0.0001578	NaN	6.8632	166	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18901	+		16425	8761	9545	9742							0.059687922886723754
LYSKEILYK	9	Unmodified	_LYSKEILYK_					0	0	0			REV__tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	REV__tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.2252635484667	3	386.225264	1155.65396	1.7913	0.00069183	-3.2908	-0.001271	-1.4995	-0.00057915	386.2241190936804	18.722	0.095953	18.708	18.636	18.731	-0.014059	1434	58	0.75435036	0.035233438	0.7528309	458.61926	0	21.420746						143	5	3	NaN	NaN	NaN	0.10363	1	14518	14518		25.681	0	1	17116	+		16426	13498	9546	9743	12982	12982					0.08236042342718974
LYSLGGARSI	10	Unmodified	_LYSLGGARSI_					0	0	0		ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;nc|ENSG00000186049|Q86Y46-2|KRT73	ENSG00000186049|ENST00000305748|KRT73	ENSG00000186049|ENST00000305748|KRT73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5785707153	1	1036.57857	1035.57129	1.0096	0.0010466	-9.2961	-0.0096361	-8.2865	-0.0085896	1036.5679835398414	33.118	0.072392	33.118	33.094	33.166	0	153	97	1.5281296	0.056705832	1.5281296	310.1138	0	11.50769						188	4	3	NaN	NaN	NaN	0.10101	1	10023	10023		45.827	3.509	1	21744		+	16427	214	9547	9744	12983	12983					0.05493145334571636
LYSLGWASF	9	Unmodified	_LYSLGWASF_					0	0	0		ENSG00000161281|ENST00000292907|COX7A1	ENSG00000161281|ENST00000292907|COX7A1	ENSG00000161281|ENST00000292907|COX7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5196588529	1	1043.51966	1042.51238	1.1061	0.0011542	1.6222	0.0016928	2.7283	0.002847	1043.5208784846554	32.875	0.16885	32.872	32.824	32.993	-0.0031052	105	91	1.5564433	0.05307722	1.5549239	315.83203	0	10.770386						256	8	3	NaN	NaN	NaN	0.14301	1	10114	10114		29.598	5.7479	1	30344			16428	4098	9548	9745	12984	12984					-0.0071733095976469485
LYSLGWASF	9	Unmodified						0	0	0		ENSG00000161281|ENST00000292907|COX7A1	ENSG00000161281|ENST00000292907|COX7A1	ENSG00000161281|ENST00000292907|COX7A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1043.51966	1042.51238	1.4131	0.0014746	0.28917	0.00030175	1.7023	0.0017764	1043.5207743610783	32.659	0.12067	32.659	32.611	32.732	0	168	49	1.5192716	0.028352857	1.5192716	308.28918		5.7533264	-0.10648	-0.0010271	-0.017826	NaN	29.598	128	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11240			16429	4098	9548	9745							-0.0071733095976469485
LYSLICLCIT	10	Unmodified	_LYSLICLCIT_					0	0	0			REV__nc|ENSG00000213047|Q6P3S1-3|DENND1B	REV__nc|ENSG00000213047|Q6P3S1-3|DENND1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3034209497	2	571.303421	1140.59229	1.4626	0.00083557	-1.871	-0.0010689	-0.40841	-0.00023333	571.3027569672	34.324	0.1929	34.324	34.252	34.445	0	1197	55	0.9001988	0.033093095	0.9001988	364.92062	0	13.415222						168	9	3	NaN	NaN	NaN	0.23201	1	14474	14474		41.785	12.186	1	18391	+		16430	8308	9549	9746	12985	12985					0.02761651327546133
LYSLIIALL	9	Unmodified	_LYSLIIALL_					0	0	0		ENSG00000188869|ENST00000359440|TMC3;nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant	ENSG00000188869|ENST00000359440|TMC3	ENSG00000188869|ENST00000359440|TMC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.6546957713	1	1018.6547	1017.64742	2.0832	0.0021221	1.5628	0.0015919	3.646	0.003714	1018.6561848293557	38.586	0.096081	38.59	38.566	38.662	0.0040283	87	46	1.5670487	0.026506305	1.5655292	318.08548	0	5.3803406						92	5	2	NaN	NaN	NaN	0.02781	1	9112	9112		61.977	6.0293	1	6460.5			16431	5569	9550	9747	12986	12986					0.13930149181976503
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.78202455365	2	527.782025	1053.5495	1.8928	0.00099897	-3.466	-0.0018293	-1.5732	-0.00083031	527.7802434415437	30.077	0.16899	30.077	30.053	30.222	0	1260	52	0.8615505	0.03132391	0.8615505	349.59793	0	12.710541						244	8	4	NaN	NaN	NaN	0.0052656	1	10800	10800		102.05	35.39	1	43158			16432	2947	9551	9748	12987	12987					0.02486340585983271
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5567726406998	1	1054.55677	1053.5495	2.4226	0.0025548	-0.65591	-0.00069169	1.7667	0.0018631	1054.5561738872934	30.077	0.16899	30.077	30.053	30.222	0	90	70	1.5652816	0.04064727	1.5652816	317.58203	0	8.247009						252	8	3	NaN	NaN	NaN	0.01966	1	10803	10803		72.428	32.275	1	37064			16433	2947	9551	9748	12988	12988					0.02486340585983271
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.78202455365	2	527.782025	1053.5495	0.77659	0.00040987	-1.2812	-0.0006762	-0.50462	-0.00026633	527.7813872741882	30.076	0.24133	30.07	30.045	30.287	-0.0064087	1257	61	0.86339295	0.036849678	0.8618735	350.3455	0	14.952759						252	11	4	NaN	NaN	NaN	0.017076	1	10578	10578		75.698	11.74	1	42696			16434	2947	9551	9748	12989	12989					0.02486340585983271
LYSNIAFNL	9	Unmodified	_LYSNIAFNL_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5567726406998	1	1054.55677	1053.5495	1.2529	0.0013213	-0.39034	-0.00041163	0.86256	0.00090962	1054.5562970083724	30.076	0.12067	30.07	30.045	30.166	-0.0064087	87	91	1.5670487	0.05303788	1.5655292	317.94055	0	10.760925						245	6	3	NaN	NaN	NaN	0.00065562	1	10579	10579		115.07	48.414	1	32730			16435	2947	9551	9748	12990	12990					0.02486340585983271
LYSQLQVFF	9	Unmodified	_LYSQLQVFF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;ENST00000466371.5_1_X:48339567-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.8054996499501	2	572.8055	1143.59645	1.0083	0.00057757	-4.7426	-0.0027166	-3.7343	-0.002139	572.8026887543255	33.504	0.19294	33.504	33.456	33.648	0	1227	64	0.88180584	0.03863573	0.88180584	357.4533	0	15.66156						334	9	4	NaN	NaN	NaN	0.02857	1	14584	14584		60.982	20.828	1	60799			16436	731	9552	9749	12991	12991					0.030392001371410515
LYSQLQVFF	9	Unmodified	_LYSQLQVFF_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000492562.5_1_X:48334751-48340044:+|nuORF;ENST00000466371.5_1_X:48339567-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8054996499501	2	572.8055	1143.59645	0.39548	0.00022653	-3.7669	-0.0021577	-3.3714	-0.0019312	572.8033044471307	33.502	0.21717	33.501	33.452	33.67	-0.0018463	1227	76	0.88180584	0.045980036	0.8802864	357.4533	0	18.638702						340	10	4	NaN	NaN	NaN	0.019103	1	14104	14104		73.133	30.138	1	60671			16437	731	9552	9749	12992	12992					0.030392001371410515
LYSRLFSWL	9	Unmodified	_LYSRLFSWL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8267664083002	2	592.826766	1183.63898	0.84186	0.00049908	-2.3469	-0.0013913	-1.505	-0.00089222	592.8256335572352	31.79	0.16894	31.79	31.742	31.911	0	1170	49	0.91673553	0.029377997	0.91673553	371.4628	0	11.904022						198	8	3	NaN	NaN	NaN	0.19268	1	15977	15977		25.801	12.338	1	31828			16438	2576	9553	9750	12993	12993					0.054505952653926215
LYSRLFSWL	9	Unmodified	_LYSRLFSWL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8267664083002	2	592.826766	1183.63898	0.28649	0.00016984	-2.5183	-0.0014929	-2.2318	-0.0013231	593.3264095633152	31.934	0.21716	31.93	31.834	32.051	-0.0037613	1167	70	0.91857195	0.042255938	0.9170525	372.2069	0	17.122192						259	10	3	NaN	NaN	NaN	0.27507	1	15365	15365		20.513	2.7143	1	32840			16439	2576	9553	9750	12994	12994					0.054505952653926215
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5826530402	1	1065.58265	1064.57538	1.879	0.0020023	-0.088247	-9.4035E-05	1.7908	0.0019082	1065.582668850722	28.605	0.16891	28.605	28.556	28.725	0	84	70	1.5688156	0.040638685	1.5688156	318.2564	0	8.244141						231	8	3	NaN	NaN	NaN	0.024221	1	11342	11342		66.656	27.198	1	34922			16440	4601	9554	9751	12995	12995					0.04567190037619184
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5826530402	1	1065.58265	1064.57538	1.0353	0.0011032	-0.38663	-0.00041198	0.64869	0.00069124	1065.5825278696532	28.604	0.19304	28.596	28.547	28.74	-0.0083504	84	67	1.5688156	0.038865685	1.5672961	318.2564	0	7.88443						232	9	3	NaN	NaN	NaN	0.030669	1	11079	11079		58.235	10.754	1	31828			16441	4601	9554	9751	12996	12996					0.04567190037619184
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.82422371935	2	588.824224	1175.63389	1.8509	0.0010899	-0.22181	-0.00013061	1.6291	0.00095927	588.8247186087756	18.988	0.11991	18.988	18.964	19.084	0	1149	37	0.92958635	0.022021592	0.92958635	376.6995	0	8.92392						124	6	3	NaN	NaN	NaN	0.084037	1	15674	15674		38.131	23.706	1	13361			16442	1852	9555	9752	12997	12997					0.0531029140274768
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.82422371935	2	588.824224	1175.63389	1.3928	0.00082009	-0.69295	-0.00040803	0.69981	0.00041206	588.8235750801324	19.154	0.14427	19.14	19.068	19.212	-0.014141	1149	37	0.92958635	0.022021592	0.9280669	376.6995	0	8.92392						140	7	3	NaN	NaN	NaN	0.13999	1	15104	15104		30.035	17.033	1	13394			16443	1852	9555	9752	12998	12998					0.0531029140274768
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.88524130176665	3	392.885241	1175.63389	1.4688	0.00057706	0.14995	5.8913E-05	1.6187	0.00063597	392.88550827283603	19.13	0.19234	19.116	19.068	19.26	-0.014141	1467	49	0.7339432	0.029697716	0.7324238	446.12308	0	18.051544						209	9	3	NaN	NaN	NaN	0.060816	1	15105	15105		50.831	37.396	1	21220			16444	1852	9555	9752	12999	12999					0.0531029140274768
LYSTDFIVF	9	Unmodified	_LYSTDFIVF_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;nc|ENSG00000188994|O60281-2|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.5611893166001	1	1104.56119	1103.55391	1.295	0.0014304	2.7879	0.0030795	4.0829	0.0045098	1104.565241327945	34.395	0.19284	34.395	34.346	34.539	-0.0006485	60	67	1.582944	0.038849115	1.5814246	320.9774	0	7.8775635						278	9	3	NaN	NaN	NaN	0.078597	1	12645	12645		38.918	12.803	1	33370			16445	5575	9556	9753	13000	13000					0.006278050089122189
LYSVIEPAPM	10	Unmodified	_LYSVIEPAPM_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1119.5754591722998	1	1119.57546	1118.56818	0.71471	0.00080017	6.8997	0.0077248	7.6145	0.008525	1119.581043763273	31.669	0.096512	31.664	31.64	31.737	-0.0044155	60	61	1.582944	0.035313725	1.5814246	320.92413	0	7.1594543						133	5	2	NaN	NaN	NaN	0.36718	1	13217	13217		24.961	9.7856	1	14927	+		16446	10539	9557	9754	13001	13001					0.013641341655329597
LYSVSLALL	9	Unmodified	_LYSVSLALL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5870101366	1	978.58701	977.579734	2.0251	0.0019817	0.13518	0.00013228	2.1602	0.002114	978.5872861398788	32.875	0.24113	32.872	32.824	33.065	-0.0031052	129	205	1.5422925	0.12055123	1.540773	313.23187	0	24.483368						990	11	4	NaN	NaN	NaN	0.020004	1	7669	7669		71.993	6.3208	1	486500			16447	817	9558	9755	13002	13002					0.09004699251181592
LYSVYAQIF	9	Unmodified	_LYSVYAQIF_					0	0	0		ENST00000357219.3_1_6:37186200-37186806:-|nuORF;ENSG00000172738|ENST00000651039|TMEM217;nc|ENSG00000172738|Q8N7C4|TMEM217	ENST00000357219.3_1_6:37186200-37186806:-|nuORF	ENST00000357219.3_1_6:37186200-37186806:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2922250992	2	552.292225	1102.5699	0.86647	0.00047854	-2.9314	-0.001619	-2.065	-0.0011405	552.2914396676825	37.072	0.16866	37.072	37	37.169	0	1218	70	0.8873258	0.042329073	0.8873258	359.8503	0	17.16632						175	8	3	NaN	NaN	NaN	0.60063	1	12946	12946		5.4659	0	1	15443			16448	4850	9559	9756	13003	13003					0.022715112457944997
LYSWQFPHF	9	Unmodified	_LYSWQFPHF_					0	0	0		nc|ENSG00000006695|Q12887-2|COX10;ENSG00000006695|ENST00000261643|COX10	nc|ENSG00000006695|Q12887-2|COX10	nc|ENSG00000006695|Q12887-2|COX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.7954662799001	2	612.795466	1223.57638	0.86145	0.00052789	-2.0327	-0.0012456	-1.1713	-0.00071774	612.7943762245197	29.522	0.12066	29.522	29.498	29.618	0	1098	46	0.960755	0.02748102	0.960755	389.15314	0	11.131165						135	6	3	NaN	NaN	NaN	0.62619	1	17059	17059		4.4131	0.84331	1	11254			16449	350	9560	9757	13004	13004					-0.026465508028195472
LYSWQFPHF	9	Unmodified						0	0	0		nc|ENSG00000006695|Q12887-2|COX10;ENSG00000006695|ENST00000261643|COX10	nc|ENSG00000006695|Q12887-2|COX10	nc|ENSG00000006695|Q12887-2|COX10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.795466	1223.57638	0.65794	0.00040318	0.99335	0.00060872	1.6513	0.0010119	612.7960626915907	29.545	0.21714	29.538	29.49	29.707	-0.0070648	1095	46	0.9625867	0.027478099	0.96106726	389.89502		11.129974	0.0081024	0.0020481	0.00015612	NaN	4.4131	148	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11840			16450	350	9560	9757							-0.026465508028195472
LYTAEKVII	9	Unmodified	_LYTAEKVII_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3157001955001	2	525.3157	1048.61685	1.6913	0.00088846	-2.6117	-0.001372	-0.92043	-0.00048352	525.3143681178374	25.25	0.096455	25.238	25.238	25.334	-0.012011	1239	40	0.87444305	0.023935497	0.8729236	354.85092	0	9.713043						80	5	3	NaN	NaN	NaN	0.2345	1	10368	10368		23.118	0	1	9141.6			16451	4991	9561	9758	13005	13005					0.09448370796940253
LYTAEKVII	9	Unmodified						0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.3157	1048.61685	1.5622	0.00082065	-1.892	-0.00099388	-0.32977	-0.00017323	525.3149269057974	25.25	0.072401	25.25	25.226	25.298	0	1242	43	0.87260187	0.025778055	0.87260187	354.10376		10.460785	0.0061121	0.00055188	-0.00016088	NaN	23.118	92	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9844.9			16452	4991	9561	9758							0.09448370796940253
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7951319289001	2	573.795132	1145.57571	1.9323	0.0011087	2.0131	0.0011551	3.9453	0.0022638	573.7962945469617	30.004	0.21725	30.004	29.956	30.173	0	1194	46	0.902037	0.027573109	0.902037	365.6468	0	11.176941						310	10	4	NaN	NaN	NaN	0.04947	1	14650	14650		47.136	24.018	1	44297			16453	1030	9562	9759	13006	13006					0.008746097574885425
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7951319289001	2	573.795132	1145.57571	0.8558	0.00049105	1.7632	0.0010117	2.619	0.0015028	573.7965864384081	30.004	0.19306	29.997	29.949	30.142	-0.0064106	1191	73	0.90387505	0.044133663	0.9023556	366.39185	0	17.889862						314	9	4	NaN	NaN	NaN	0.021105	1	14166	14166		70.6	41.704	1	48554			16454	1030	9562	9759	13007	13007					0.008746097574885425
LYTAMRRQNN	10	Unmodified	_LYTAMRRQNN_					0	0	0			REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.88390597830005	3	422.883906	1265.62989	1.1661	0.00049314	2.4829	0.00105	3.649	0.0015431	422.8852197291888	20.622	0.16867	20.622	20.597	20.766	0	1467	46	0.7339432	0.027846098	0.7339432	445.75558	0	16.91214						126	8	2	NaN	NaN	NaN	0.507	1	18125	18125		11.561	1.3484	1	16123	+		16455	12653	9563	9760	13008	13008					0.007698786374021438
LYTAMRRQNN	10	Unmodified						0	0	0			REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	422.883906	1265.62989	1.1661	0.00049314	2.4829	0.00105	3.649	0.0015431	422.8852197291888	20.622	0.16867	20.622	20.597	20.766	0	1467	46	0.7339432	0.027846098	0.7339432	445.75558		16.91214	-0.077464	-0.00015379	-0.00016838	NaN	11.561	126	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16123	+		16456	12653	9563	9760							0.007698786374021438
LYTAMRRQNN	10	Unmodified						0	0	0			REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	422.883906	1265.62989	0.70628	0.00029868	2.695	0.0011397	3.4013	0.0014384	422.88492707417333	20.791	0.16856	20.776	20.728	20.897	-0.014086	1464	43	0.73579943	0.02598548	0.73428	446.88293		15.7821045	0.077464	0.00011538	0.00016838	NaN	11.561	158	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13658	+		16457	12653	9563	9760							0.007698786374021438
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.3078751634	2	566.307875	1130.6012	2.0648	0.0011693	-1.9702	-0.0011157	0.094563	5.3552E-05	566.3065475858095	28.026	0.16892	28.026	28.001	28.17	0	1191	97	0.90387505	0.05885768	0.90387505	366.44955	0	23.862091						251	8	3	NaN	NaN	NaN	0.03618	1	14111	14111		52.78	22.17	1	55594			16458	521	9564	9761	13009	13009					0.04112084279881856
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.3078751634	2	566.307875	1130.6012	1.0394	0.00058863	-2.3797	-0.0013476	-1.3403	-0.00075901	566.3054888490101	28.049	0.14478	28.04	28.016	28.161	-0.0089779	1191	103	0.90387505	0.062543035	0.9023556	366.44955	0	25.356201						338	7	4	NaN	NaN	NaN	0.032826	1	13655	13655		55.413	27.624	1	60541			16459	521	9564	9761	13010	13010					0.04112084279881856
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5455392524002	1	1090.54554	1089.53826	1.336	0.001457	-0.56307	-0.00061405	0.77292	0.00084291	1090.5445010692665	33.383	0.14482	33.383	33.335	33.48	0	63	64	1.5811787	0.03708923	1.5811787	320.67038	0	7.5218506						159	7	3	NaN	NaN	NaN	0.0047854	1	12373	12373		103.03	66.439	1	12566			16460	4124	9565	9762	13011	13011					-0.0029248150810872175
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5455392524002	1	1090.54554	1089.53826	0.58948	0.00064286	0.81821	0.00089229	1.4077	0.0015351	1090.5455892460147	33.406	0.12066	33.404	33.356	33.476	-0.0018501	69	58	1.5776473	0.033549786	1.5761279	319.9542	0	6.8040466						135	6	2	NaN	NaN	NaN	0.00010594	1	12065	12065		122.55	72.717	1	12116			16461	4124	9565	9762	13012	13012					-0.0029248150810872175
LYTGTVSSF	9	Unmodified	_LYTGTVSSF_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4829389956002	1	974.482939	973.475663	2.3814	0.0023206	-1.9301	-0.0018809	0.45127	0.00043975	974.480690079493	23.465	0.14463	23.465	23.441	23.586	0	297	145	1.4428991	0.085493445	1.4428991	293.06277	0	17.364288						472	7	4	NaN	NaN	NaN	0.0018626	1	7698	7698		111.43	52.834	1	166470			16462	5387	9566	9763	13013	13013					-0.012136275763168669
LYTGTVSSF	9	Unmodified	_LYTGTVSSF_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4829389956002	1	974.482939	973.475663	2.333	0.0022734	-0.85829	-0.00083639	1.4747	0.0014371	974.4819668865587	23.489	0.14476	23.476	23.427	23.572	-0.013294	297	112	1.4428991	0.06588364	1.4413797	293.06274	0	13.381409						507	7	4	NaN	NaN	NaN	3.2142E-07	1	7550	7550		129.63	55.296	1	166830			16463	5387	9566	9763	13014	13014					-0.012136275763168669
LYTILTTQL	9	Unmodified	_LYTILTTQL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.31315750655	2	533.313158	1064.61176	0.56	0.00029866	-0.57718	-0.00030782	-0.017173	-9.1585E-06	533.3132201458395	30.317	0.14474	30.311	30.263	30.407	-0.0064087	1221	52	0.885486	0.03128332	0.88396657	359.2622	0	12.692383						181	7	4	NaN	NaN	NaN	0.23112	1	11084	11084		23.334	9.5974	1	23106			16464	2577	9567	9764	13015	13015					0.08204066934331422
LYTNDGDMEA	10	Unmodified	_LYTNDGDMEA_					0	0	0		ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	ENST00000599063.5_1_19:48601366-48609786:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1128.4513808707	1	1128.45138	1127.4441	2.3094	0.0026061	-3.0927	-0.00349	-0.7833	-0.00088392	1128.4487964856999	30.173	0.12066	30.173	30.125	30.246	0	93	67	1.5635144	0.038882017	1.5635144	316.9546	0	7.882141						226	6	4	NaN	NaN	NaN	0.5917	1	13985	13985		15.463	1.0377	1	19561			16465	1543	9568	9765	13016	13016					-0.1145198839258228
LYTNLALLL	9	Unmodified	_LYTNLALLL_					0	0	0		tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.3182428844501	2	517.318243	1032.62193	1.5351	0.00079416	-1.1393	-0.00058936	0.39588	0.0002048	517.3173049630578	29.305	0.12063	29.305	29.256	29.377	0	1257	58	0.86339295	0.034993947	0.86339295	350.4371	0	14.203491						164	6	3	NaN	NaN	NaN	0.2345	1	9903	9903		23.118	6.2593	1	18112			16466	13767	9569	9766	13017	13017					0.10692674659571821
LYTNLALLL	9	Unmodified						0	0	0		tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	tr|U7SLR8|U7SLR8_FUSNUATP-dependentDNAhelicaseRecGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01872PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.318243	1032.62193	1.0107	0.00052287	-2.4696	-0.0012776	-1.4589	-0.00075471	517.3167602096466	29.352	0.12064	29.344	29.296	29.417	-0.0077209	1260	64	0.8615505	0.03867334	0.8600311	349.6893		15.696899	0.019891	-0.0010315	-0.0016809	NaN	23.118	181	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18091			16467	13767	9569	9766							0.10692674659571821
LYTNVTISL	9	Unmodified	_LYTNVTISL_					0	0	0		ENSG00000090520|ENST00000265028|DNAJB11	ENSG00000090520|ENST00000265028|DNAJB11	ENSG00000090520|ENST00000265028|DNAJB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.5720883539001	1	1023.57209	1022.56481	2.3125	0.002367	-4.612	-0.0047208	-2.2995	-0.0023537	1023.569687793147	28.388	0.096512	28.388	28.363	28.46	0	153	61	1.5281296	0.03542614	1.5281296	310.16562	0	7.19046						145	5	3	NaN	NaN	NaN	0.041983	1	9467	9467		50.315	14.08	1	16956			16468	1058	9570	9767	13018	13018					0.05443207383189019
LYTNVTISL	9	Unmodified	_LYTNVTISL_					0	0	0		ENSG00000090520|ENST00000265028|DNAJB11	ENSG00000090520|ENST00000265028|DNAJB11	ENSG00000090520|ENST00000265028|DNAJB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.5720883539001	1	1023.57209	1022.56481	1.4085	0.0014417	-2.5744	-0.0026351	-1.1659	-0.0011934	1023.5715440770616	28.411	0.09655	28.402	28.378	28.474	-0.0089798	150	49	1.5299006	0.028334856	1.5283811	310.5251	0	5.751129						99	5	2	NaN	NaN	NaN	0.03618	1	9280	9280		52.78	23.884	1	11773			16469	1058	9570	9767	13019	13019					0.05443207383189019
LYTPEHHLI	9	Unmodified	_LYTPEHHLI_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.86959123756674	3	374.869591	1121.58694	1.9863	0.0007446	0.26336	9.8727E-05	2.2497	0.00084333	374.86922321719686	17.837	0.095955	17.837	17.813	17.909	0	1464	31	0.73579943	0.018563092	0.73579943	447.5008	0	11.289734						61	5	2	NaN	NaN	NaN	0.24994	1	13754	13754		14.425	11.121	1	5714.5			16470	2613	9571	9768	13020	13020					0.031014318516326966
LYTPHSWLL	9	Unmodified	_LYTPHSWLL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.3056668254501	2	565.305667	1128.59678	1.7748	0.0010033	-4.7488	-0.0026845	-2.974	-0.0016812	565.3038667619641	27.253	0.24128	27.253	27.109	27.35	0	1173	115	0.91489893	0.06986326	0.91489893	370.92682	0	28.324615						415	11	3	NaN	NaN	NaN	0.021105	1	14033	14033		70.6	39.039	1	78786			16471	4058	9572	9769	13021	13021					0.03762619857002392
LYTPHSWLL	9	Unmodified	_LYTPHSWLL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.3056668254501	2	565.305667	1128.59678	1.1167	0.00063128	-3.9972	-0.0022596	-2.8805	-0.0016284	565.3047274071101	27.301	0.21719	27.291	27.146	27.363	-0.010126	1173	103	0.91489893	0.062502444	0.9133795	370.92682	0	25.340363						297	10	2	NaN	NaN	NaN	0.062072	1	13593	13593		41.785	12.186	1	71823			16472	4058	9572	9769	13022	13022					0.03762619857002392
LYTRINMEKLY	11	Unmodified	_LYTRINMEKLY_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3868621534	2	722.386862	1442.75917	1.2011	0.00086766	-1.1148	-0.00080534	0.086268	6.2319E-05	722.3858388494156	30.993	0.096565	30.988	30.988	31.084	-0.0050716	1044	34	0.99369496	0.020111501	0.9921755	401.8126	0	8.132324						86	5	2	NaN	NaN	NaN	0.74155	1	19371	19371		4.7291	0	1	9788	+		16473	9328	9573	9770	13023	13023					0.055502154767964385
LYTRINMEKLY	11	Unmodified	_LYTRINMEKLY_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3868621534	2	722.386862	1442.75917	1.5882	0.0011473	-0.39817	-0.00028764	1.1901	0.00085968	722.38553815647	30.945	0.024124	30.94	30.915	30.94	-0.0050716	1050	34	0.9900381	0.020115912	0.9885187	400.3339	0	8.134094						39	2	2	NaN	NaN	NaN	0.76654	1	19372	19372		2.5994	0	1	4222.5	+		16474	9328	9573	9770	13024	13024					0.055502154767964385
LYTSLRDATL	10	Unmodified	_LYTSLRDATL_					0	0	0			REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8165956525	2	576.816596	1151.61864	2.2803	0.0013153	1.7603	0.0010154	4.0407	0.0023307	576.8175219747365	25.757	0.24128	25.757	25.708	25.95	0	1182	58	0.9093879	0.034914613	0.9093879	368.6035	0	14.151978						301	11	4	NaN	NaN	NaN	0.19179	1	14870	14870		36.235	6.1994	1	88584	+		16475	13327	9574	9771	13025	13025					0.04889379814903805
LYTSPFLLL	9	Unmodified	_LYTSPFLLL_					0	0	0			REV__ENSG00000232040|ENST00000452236|SCAND3	REV__ENSG00000232040|ENST00000452236|SCAND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.618310265	1	1066.61831	1065.61103	0.93268	0.00099481	0.4098	0.0004371	1.3425	0.0014319	1066.618778036623	37.022	0.16838	37.024	36.952	37.121	0.0022507	63	70	1.5811787	0.040612817	1.5796592	320.76044	0	8.23877						306	8	3	NaN	NaN	NaN	0.03623	1	11117	11117		52.758	0	1	34137	+		16476	11318	9575	9772	13026	13026					0.08085272285279643
LYTTYFTIL	9	Unmodified	_LYTTYFTIL_					0	0	0		tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8077079879001	2	567.807708	1133.60086	1.612	0.00091533	-4.6673	-0.0026502	-3.0553	-0.0017348	567.8052380870948	29.184	0.21718	29.184	29.039	29.256	0	1191	52	0.90387505	0.031246126	0.90387505	366.4379	0	12.66745						232	10	3	NaN	NaN	NaN	0.14301	1	14225	14225		29.598	3.7974	1	31500			16477	13794	9576	9773	13027	13027					0.03940664560059304
LYTVFNAF	8	Unmodified	_LYTVFNAF_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4981951293	1	974.498195	973.490919	2.1215	0.0020674	0.80493	0.0007844	2.9264	0.0028518	974.4981509220993	23.417	0.072275	23.417	23.345	23.417	0	291	58	1.446459	0.033821344	1.446459	293.78574	0	6.8693237						77	4	2	NaN	NaN	NaN	0.35353	1	7700	7700		38.918	5.2196	1	7767			16478	4192	9577	9774	13028	13028					0.0031128401151363505
LYTVVTPML	9	Unmodified	_LYTVVTPML_					0	0	0		ENSG00000186513|ENST00000641291|OR9Q2;ENSG00000168124|ENST00000304646|OR1F1	ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5747308907999	1	1036.57473	1035.56745	0.86686	0.00089857	-4.1358	-0.0042871	-3.2689	-0.0033885	1036.5692513007548	33.092	0.072319	33.09	33.09	33.162	-0.0024757	153	76	1.5281296	0.04428506	1.5266101	310.1138	0	8.987061						160	4	3	NaN	NaN	NaN	0.056143	1	9815	9815		44.302	5.3845	1	19998			16479	5477	9578	9775	13029	13029					0.051093395164798494
LYTVVVYDF	9	Unmodified	_LYTVVVYDF_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5768393807998	1	1118.57684	1117.56956	1.385	0.0015493	-2.2285	-0.0024927	-0.84343	-0.00094344	1118.573914455816	31.67	0.16896	31.67	31.621	31.79	0	60	82	1.582944	0.0476861	1.582944	320.92767	0	9.667938						212	8	2	NaN	NaN	NaN	0.011206	1	13581	13581		89.256	33.762	1	27198			16480	2947	9579	9776	13030	13030					0.015480915259331596
LYTYPENWRAF	11	Unmodified	_LYTYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.3538766158	2	730.353877	1458.6932	1.957	0.0014293	-0.75623	-0.00055232	1.2007	0.00087695	730.3540340240224	25.877	0.21716	25.877	25.757	25.974	0	1032	91	1.0010062	0.054852605	1.0010062	404.72702	0	22.178009						410	10	5	NaN	NaN	NaN	0.062807	1	20419	20419		46.588	35.417	1	52395			16481	6120	9580	9777	13031	13031					-0.017798573737309198
LYTYPENWRAF	11	Unmodified	_LYTYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3538766158	2	730.353877	1458.6932	2.1601	0.0015776	-1.556	-0.0011364	0.60406	0.00044118	730.353643585316	25.877	0.19309	25.865	25.841	26.034	-0.0116	1035	82	0.99917877	0.04937005	0.9976593	403.9881	0	19.961304						357	9	4	NaN	NaN	NaN	0.29849	1	19437	19437		25.681	16.719	1	50788			16482	6120	9580	9777	13032	13032					-0.017798573737309198
LYVADELFI	9	Unmodified	_LYVADELFI_					0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5768393807998	1	1082.57684	1081.56956	2.0936	0.0022665	-1.8318	-0.0019831	0.26182	0.00028344	1082.5742581587228	38.177	0.14417	38.18	38.132	38.276	0.0034218	96	49	1.5617468	0.028274894	1.5602274	316.75873	0	5.7348022						85	7	2	NaN	NaN	NaN	0.56671	1	11745	11745		6.8632	0.613	1	5186.8	+		16483	10311	9581	9778	13033	13033					0.03204091525935837
LYVADELFI	9	Unmodified						0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1082.57684	1081.56956	0.75044	0.00081241	0.50146	0.00054287	1.2519	0.0013553	1082.5771914245456	38.179	0.048061	38.179	38.155	38.203	0	96	52	1.5617468	0.03004682	1.5617468	316.75873		6.094208	-0.00052597	0.0011555	0.00075972	NaN	6.8632	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3067.8	+		16484	10311	9581	9778							0.03204091525935837
LYVADELFI	9	Unmodified						0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1082.57684	1081.56956	2.0936	0.0022665	-1.8318	-0.0019831	0.26182	0.00028344	1082.5742581587228	38.177	0.14417	38.18	38.132	38.276	0.0034218	96	49	1.5617468	0.028274894	1.5602274	316.75873		5.7348022	0.00052597	-0.0013704	-0.00075972	NaN	6.8632	85	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5186.8	+		16485	10311	9581	9778							0.03204091525935837
LYVAFITGYSL	11	Unmodified	_LYVAFITGYSL_					0	0	0			REV__ENSG00000094661|ENST00000641398|OR1I1	REV__ENSG00000094661|ENST00000641398|OR1I1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.22878511056666	3	416.228785	1245.66453	1.7557	0.00073076	-7.4213	-0.003089	-5.6656	-0.0023582	416.2253728685302	15.724	0.11988	15.711	15.639	15.759	-0.012611	1479	43	0.72651637	0.025999546	0.7249969	441.32117	0	15.793396						90	6	2	NaN	NaN	NaN	0.77378	1	16920	16920		0.9877	0	1	8796.4	+		16486	8750	9582	9779	13034	13034					0.0515202499714178
LYVALSPLL	9	Unmodified	_LYVALSPLL_					0	0	0			REV__ENSG00000109016|ENST00000395511|DHRS7B	REV__ENSG00000109016|ENST00000395511|DHRS7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.6077455787002	1	988.607746	987.600469	1.2631	0.0012487	0.1286	0.00012713	1.3917	0.0013758	988.6065838274598	33.842	0.072403	33.842	33.817	33.89	0	153	43	1.5281296	0.024795532	1.5281296	310.31168	0	5.0351562						71	4	2	NaN	NaN	NaN	0.39983	1	8149	8149		13.737	1.1492	1	6704.8	+		16487	9047	9583	9780	13035	13035					0.10617289630863525
LYVALSPLL	9	Unmodified						0	0	0			REV__ENSG00000109016|ENST00000395511|DHRS7B	REV__ENSG00000109016|ENST00000395511|DHRS7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.607746	987.600469	1.2631	0.0012487	0.1286	0.00012713	1.3917	0.0013758	988.6065838274598	33.842	0.072403	33.842	33.817	33.89	0	153	43	1.5281296	0.024795532	1.5281296	310.31168		5.0351562	0.0015243	0.00019191	-0.0010112	NaN	13.737	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6704.8	+		16488	9047	9583	9780							0.10617289630863525
LYVALSPLL	9	Unmodified						0	0	0			REV__ENSG00000109016|ENST00000395511|DHRS7B	REV__ENSG00000109016|ENST00000395511|DHRS7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	988.607746	987.600469	1.3698	0.0013542	-0.29306	-0.00028972	1.0767	0.0010645	988.606527162477	33.84	0.072399	33.839	33.814	33.887	-0.0018463	147	43	1.5316714	0.024795532	1.530152	311.0309		5.0351562	-0.0015243	-0.00022494	0.0010112	NaN	13.737	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5937.8	+		16489	9047	9583	9780							0.10617289630863525
LYVAQAHLKL	10	Unmodified	_LYVAQAHLKL_					0	0	0		ENST00000529239.1_1_8:61850915-61851251:-|nuORF	ENST00000529239.1_1_8:61850915-61851251:-|nuORF	ENST00000529239.1_1_8:61850915-61851251:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.34786599115	2	578.347866	1154.68118	0.97653	0.00056477	-8.182	-0.0047321	-7.2055	-0.0041673	578.3436488458551	31.308	0.1448	31.308	31.284	31.428	0	1173	55	0.91489893	0.03305739	0.91489893	370.8257	0	13.398804						222	7	4	NaN	NaN	NaN	0.25724	1	14986	14986		30.61	0	1	57257			16490	7442	9584	9781	13036	13036					0.11002570673736045
LYVCFGQK	8	Unmodified	_LYVCFGQK_					0	0	0		ENST00000471841.5_1_3:179080194-179080245:+|nuORF	ENST00000471841.5_1_3:179080194-179080245:+|nuORF	ENST00000471841.5_1_3:179080194-179080245:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.24676335055005	2	479.246763	956.478974	1.3394	0.00064191	-6.3569	-0.0030465	-5.0175	-0.0024046	479.2434219805072	13.084	0.14406	13.084	13.012	13.156	0	1323	55	0.8228144	0.033254504	0.8228144	334.31647	0	13.511597						77	7	2	NaN	NaN	NaN	0.8439	1	7247	7247		3.1533	0.36816	1	5761.4			16491	7156	9585	9782	13037	13037					-0.0010065600330335656
LYVCFGQK	8	Unmodified						0	0	0		ENST00000471841.5_1_3:179080194-179080245:+|nuORF	ENST00000471841.5_1_3:179080194-179080245:+|nuORF	ENST00000471841.5_1_3:179080194-179080245:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	479.246763	956.478974	1.5223	0.00072955	-7.0978	-0.0034016	-5.5755	-0.002672	479.2434940775165	13.11	0.1198	13.1	13.076	13.196	-0.00947	1320	70	0.824661	0.042498827	0.8231416	335.06677		17.267609	0.0079853	-0.00035317	0.00016357	NaN	3.1533	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6637.1			16492	7156	9585	9782							-0.0010065600330335656
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.5975748229	1	1116.59757	1115.5903	1.2969	0.0014482	0.38456	0.0004294	1.6815	0.0018775	1116.5980450287157	40.296	0.14433	40.296	40.248	40.392	0	57	115	1.5847093	0.06713152	1.5847093	321.2925	0	13.610596						291	7	2	NaN	NaN	NaN	0.020004	1	13509	13509		71.993	21.678	1	41840			16493	5429	9586	9783	13038	13038					0.03712681905631143
LYVDSLFFL	9	Unmodified	_LYVDSLFFL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.5975748229	1	1116.59757	1115.5903	1.1053	0.0012342	0.95087	0.0010617	2.0562	0.0022959	1116.5981571846626	40.27	0.16825	40.276	40.204	40.372	0.0060463	54	118	1.5864743	0.06890178	1.5849549	321.65036	0	13.969513						383	8	3	NaN	NaN	NaN	0.056143	1	13118	13118		44.302	1.3076	1	43380			16494	5429	9586	9783	13039	13039					0.03712681905631143
LYVFGGGQ	8	Unmodified	_LYVFGGGQ_					0	0	0		RABEPK|p.E159Q|1|0.12|ENSG00000136933|chr9:125220649-125220649|G/C|missense_variant	RABEPK|p.E159Q|1|0.12|ENSG00000136933|chr9:125220649-125220649|G/C|missense_variant	RABEPK|p.E159Q|1|0.12|ENSG00000136933|chr9:125220649-125220649|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4250301862003	1	840.42503	839.417754	0.80125	0.00067339	3.779	0.003176	4.5803	0.0038494	840.4288492681277	32.465	0.12073	32.462	32.414	32.534	-0.0031052	459	40	1.3464937	0.023274302	1.3449743	274.09097	0	4.7377014						108	6	2	NaN	NaN	NaN	0.82332	1	5130	5130		6.0903	1.1806	1	8414.6			16495	8110	9587	9784	13040	13040					-0.008378447110771958
LYVFLFMF	8	Unmodified	_LYVFLFMF_					0	0	0			REV__nc|ENSG00000241356|P0C626|OR5G3	REV__nc|ENSG00000241356|P0C626|OR5G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2853571948001	2	540.285357	1078.55616	1.4919	0.00080606	-2.7645	-0.0014936	-1.2726	-0.00068755	540.2837128606094	27.446	0.12069	27.446	27.422	27.543	0	1212	79	0.8910048	0.047842503	0.8910048	361.44162	0	19.407623						193	6	4	NaN	NaN	NaN	0.60626	1	11917	11917		24.901	3.0661	1	29890	+		16496	13242	9588	9785	13041	13041					0.020025622130106058
LYVFLFMF	8	Unmodified						0	0	0			REV__nc|ENSG00000241356|P0C626|OR5G3	REV__nc|ENSG00000241356|P0C626|OR5G3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.285357	1078.55616	1.4919	0.00080606	-2.7645	-0.0014936	-1.2726	-0.00068755	540.2837128606094	27.446	0.12069	27.446	27.422	27.543	0	1212	79	0.8910048	0.047842503	0.8910048	361.44162		19.407623	0	0	0	NaN	24.901	193	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29890	+		16497	13242	9588	9785							0.020025622130106058
LYVGPWRT	8	Unmodified	_LYVGPWRT_					0	0	0			REV__ENSG00000103184|ENST00000251170|SEC14L5	REV__ENSG00000103184|ENST00000251170|SEC14L5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.27162704285007	2	496.271627	990.528701	1.7011	0.00084421	-2.3479	-0.0011652	-0.64683	-0.000321	496.2705353127507	15.15	0.2162	15.15	15.126	15.342	0	1254	43	0.8652351	0.025789201	0.8652351	351.38107	0	10.473267						256	10	3	NaN	NaN	NaN	0.45125	1	8237	8237		33.698	0.56135	1	62934	+		16498	8908	9589	9786	13042	13042					0.03305794997004341
LYVLLSWH	8	Unmodified	_LYVLLSWH_					0	0	0			REV__ENSG00000166192|ENST00000340912|SENP8	REV__ENSG00000166192|ENST00000340912|SENP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7896526205001	2	515.789653	1029.56475	2.317	0.0011951	-0.58968	-0.00030415	1.7273	0.00089093	515.7894673580513	26.239	0.12066	26.239	26.215	26.336	0	1266	67	0.85786515	0.040525913	0.85786515	348.20706	0	16.449432						201	6	3	NaN	NaN	NaN	0.59262	1	9768	9768		25.752	0	1	21552	+		16499	10417	9590	9787	13043	13043					0.051152521738458745
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1	ENSG00000062598|ENST00000290246|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.32606791655	2	548.326068	1094.63758	0.71699	0.00039314	-0.027049	-1.4832E-05	0.68994	0.00037831	548.3257950995842	37.675	0.21659	37.675	37.554	37.771	0	1227	49	0.88180584	0.029444695	0.88180584	357.6437	0	11.9422						240	10	3	NaN	NaN	NaN	0.11467	1	12623	12623		33.698	6.9667	1	42284			16500	652;3890	9591	9788	13044	13044					0.09404961176596771
LYVLQVLTF	9	Unmodified	_LYVLQVLTF_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1	ENSG00000062598|ENST00000290246|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.32606791655	2	548.326068	1094.63758	1.1856	0.00065007	-1.3795	-0.00075644	-0.19399	-0.00010637	548.3249611049544	37.648	0.16833	37.651	37.603	37.771	0.0028229	1224	43	0.883646	0.025764108	0.88212657	358.39005	0	10.449432						188	8	3	NaN	NaN	NaN	0.27442	1	12295	12295		20.555	4.1388	1	25749			16501	652;3890	9591	9788	13045	13045					0.09404961176596771
LYVMVNAKF	9	Unmodified	_LYVMVNAKF_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.79662037285	2	542.79662	1083.57869	1.4581	0.00079145	-3.6882	-0.002002	-2.2301	-0.0012105	542.7951997828958	24.55	0.1929	24.55	24.478	24.671	0	1236	67	0.876284	0.04050839	0.876284	355.44928	0	16.431519						375	9	5	NaN	NaN	NaN	0.074859	1	12130	12130		39.459	6.5896	1	96955			16502	820	9592	9789	13046	13046					0.040241616106186484
LYVMVNAKF	9	Unmodified						0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.79662	1083.57869	1.4079	0.00076418	-2.9569	-0.001605	-1.5491	-0.00084082	542.7950797091094	24.574	0.19296	24.562	24.489	24.682	-0.012392	1236	79	0.876284	0.047858	0.8747646	355.44928		19.41275	0.0057949	0.00049341	-0.00075972	NaN	39.459	389	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81426			16503	820	9592	9789							0.040241616106186484
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(65)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7940776839	2	550.794078	1099.5736	1.6089	0.00088615	0.62232	0.00034277	2.2312	0.0012289	550.7946474259671	22.645	0.19304	22.645	22.573	22.766	0	1230	103	0.8799654	0.062556505	0.8799654	356.87735	0	25.37033						440	9	4	NaN	NaN	NaN	0.025843	1	12833	12833		64.55	39.649	1	61380			16504	820	9592	9790	13047	13047		85			0.027798577480098174
LYVMVNAKF	9	Oxidation (M)	_LYVM(Oxidation (M))VNAKF_		LYVM(1)VNAKF		LYVM(65)VNAKF	0	0	1		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7940776839	2	550.794078	1099.5736	1.3254	0.00073001	2.0283	0.0011172	3.3537	0.0018472	550.7960100838675	22.669	0.24109	22.655	22.583	22.824	-0.01354	1233	91	0.87812483	0.05519098	0.8766054	356.1309	0	22.383148						439	11	4	NaN	NaN	NaN	0.025843	1	12502	12502		64.55	25.632	1	47611			16505	820	9592	9790	13048	13048		85			0.027798577480098174
LYVPALRAL	9	Unmodified	_LYVPALRAL_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.31857723545005	2	508.318577	1014.6226	1.5444	0.00078504	-1.8565	-0.0009437	-0.31213	-0.00015866	508.31744348220894	21.127	0.04818	21.127	21.127	21.175	0	1470	70	0.7320868	0.042674243	0.7320868	297.21143	0	17.324799						74	3	2	NaN	NaN	NaN	0.67989	1	9176	9176		0.92586	0	1	6679.1	+		16506	9982	9593	9791	13049	13049					0.11587514099278451
LYVPALRAL	9	Unmodified						0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.318577	1014.6226	1.5444	0.00078504	-1.8565	-0.0009437	-0.31213	-0.00015866	508.31744348220894	21.127	0.04818	21.127	21.127	21.175	0	1470	70	0.7320868	0.042674243	0.7320868	297.21143		17.324799	-0.053337	0.0011903	-0.00016848	NaN	0.92586	74	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6679.1	+		16507	9982	9593	9791							0.11587514099278451
LYVPALRAL	9	Unmodified						0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.318577	1014.6226	1.6419	0.00083462	-4.8139	-0.002447	-3.172	-0.0016124	508.3156450966022	21.248	0.072168	21.234	21.21	21.282	-0.014004	1467	28	0.7339432	0.016709447	0.7324238	297.9651		6.7836914	0.053337	-0.0018162	0.00016848	NaN	0.92586	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3919.2	+		16508	9982	9593	9791							0.11587514099278451
LYVPHSLW	8	Unmodified	_LYVPHSLW_					0	0	0		ENST00000494072.3_3_1:19186098-19209913:-|nuORF;nc|ENSG00000159423|P30038-2|ALDH4A1;nc|ENSG00000159423|P30038-3|ALDH4A1;ENSG00000159423|ENST00000375341|ALDH4A1	ENST00000494072.3_3_1:19186098-19209913:-|nuORF	ENST00000494072.3_3_1:19186098-19209913:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.7740025563	2	507.774003	1013.53345	1.6254	0.00082536	2.9556	0.0015008	4.581	0.0023261	507.77539359171783	34.421	0.096432	34.421	34.372	34.469	0	1272	67	0.854179	0.04056537	0.854179	346.78317	0	16.468872						138	5	3	NaN	NaN	NaN	0.82332	1	9129	9129		6.0903	0	1	14211			16509	4027	9594	9792	13050	13050					0.027226791397538364
LYVQYDKEEFQ	11	Unmodified	_LYVQYDKEEFQ_					0	0	0		ENST00000366554.2_1_1:241757174-241757237:-|nuORF	ENST00000366554.2_1_1:241757174-241757237:-|nuORF	ENST00000366554.2_1_1:241757174-241757237:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.3484568869	2	731.348457	1460.68236	1.5033	0.0010994	8.0117	0.0058593	9.515	0.0069588	731.3546588167941	29.715	0.24134	29.715	29.57	29.811	0	1023	64	1.0064877	0.03836173	1.0064877	406.93802	0	15.510223						352	11	5	NaN	NaN	NaN	0.65577	1	20434	20434		10.36	0.74852	1	51720			16510	6615	9595	9793	13051	13051					-0.029553045386819576
LYVSSGSS	8	Unmodified	_LYVSSGSS_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.3832249510002	1	799.383225	798.375948	1.4938	0.0011941	4.466	0.0035701	5.9598	0.0047642	799.3866531276635	28.17	0.24134	28.161	28.088	28.33	-0.0089779	495	175	1.3249949	0.10406661	1.3234755	269.93793	0	21.201233						609	11	4	NaN	NaN	NaN	0.75682	1	4641	4641		15.013	0	1	105810			16511	4372	9596	9794	13052	13052					-0.03130445190265618
LYVWMLEP	8	Unmodified	_LYVWMLEP_					0	0	0			REV__ENST00000498780.5_1_2:201862166-201888732:-|nuORF	REV__ENST00000498780.5_1_2:201862166-201888732:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.77007127135	2	525.770071	1049.52559	1.2635	0.00066432	-5.8696	-0.0030861	-4.6061	-0.0024217	525.7665455342446	24.236	0.19307	24.224	24.151	24.344	-0.012747	1305	88	0.83389086	0.05348122	0.8323714	338.391	0	21.702545						372	9	3	NaN	NaN	NaN	0.50567	1	10391	10391		30.791	0.18099	1	55334	+		16512	10115	9597	9795	13053	13053					0.0028078382797502854
LYWEIALF	8	Unmodified	_LYWEIALF_					0	0	0			REV__ENST00000583241.1_1_17:16331654-16335285:+|nuORF	REV__ENST00000583241.1_1_17:16331654-16335285:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5607953860997	1	1054.5608	1053.55352	1.3704	0.0014452	-4.3731	-0.0046117	-3.0027	-0.0031666	1054.5563614320633	31.452	0.048254	31.452	31.452	31.501	0	117	61	1.5493695	0.035377264	1.5493695	314.35358	0	7.177765						72	3	2	NaN	NaN	NaN	0.80071	1	10802	10802		9.1232	1.5828	1	5149.8	+		16513	11032	9598	9796	13054	13054					0.02888430079678983
LYWEIALF	8	Unmodified						0	0	0			REV__ENST00000583241.1_1_17:16331654-16335285:+|nuORF	REV__ENST00000583241.1_1_17:16331654-16335285:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1054.5608	1053.55352	1.3704	0.0014452	-4.3731	-0.0046117	-3.0027	-0.0031666	1054.5563614320633	31.452	0.048254	31.452	31.452	31.501	0	117	61	1.5493695	0.035377264	1.5493695	314.35358		7.177765	0	0	0	NaN	9.1232	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5149.8	+		16514	11032	9598	9796							0.02888430079678983
LYWKHSTIFDV	11	Unmodified	_LYWKHSTIFDV_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.8666198503	2	704.86662	1407.71869	0.99762	0.00070319	-5.2394	-0.0036931	-4.2418	-0.0029899	704.8625800714414	33.261	0.096546	33.259	33.21	33.307	-0.0024757	1005	34	1.0174452	0.020083427	1.0159258	411.51355	0	8.122894						65	5	3	NaN	NaN	NaN	0.74794	1	19175	19175		4.3102	0	1	4150.6			16515	3628	9599	9797	13055	13055					0.031136171486878084
LYWSENENF	9	Unmodified	_LYWSENENF_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2616532523	2	601.261653	1200.50875	0.89862	0.00054031	-3.3471	-0.0020125	-2.4485	-0.0014722	601.2595663217257	24.598	0.12061	24.586	24.538	24.658	-0.012394	1194	67	0.902037	0.04042965	0.9005176	365.44775	0	16.379517						265	6	4	NaN	NaN	NaN	0.49999	1	15833	15833		9.6116	0.64966	1	47409	+		16516	10841	9600	9798	13056	13056					-0.08348045524303416
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.88909721486664	3	411.889097	1232.64546	1.9955	0.00082192	-2.3207	-0.00095585	-0.32516	-0.00013393	411.88823187389846	16.062	0.28797	16.062	15.966	16.254	0	1446	73	0.7469324	0.044527233	0.7469324	453.7753	0	27.051086						865	13	5	NaN	NaN	NaN	0.034172	1	17348	17348		53.652	33.748	1	353210			16517	5969	9601	9799	13057	13057					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.330007589	2	617.330008	1232.64546	1.3065	0.00080655	-1.4601	-0.00090137	-0.15359	-9.4819E-05	617.329470267214	16.062	0.19196	16.062	16.014	16.206	0	1131	73	0.94059354	0.044038475	0.94059354	380.95547	0	17.836304						340	9	3	NaN	NaN	NaN	0.032021	1	17350	17350		55.592	36.473	1	37276			16518	5969	9601	9799	13058	13058					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.88909721486664	3	411.889097	1232.64546	1.765	0.000727	-1.2802	-0.00052731	0.48481	0.00019969	411.88852405918414	16.802	0.35955	16.789	16.501	16.861	-0.013294	1443	70	0.7487872	0.042669594	0.7472678	454.9021	0	25.922577						433	16	3	NaN	NaN	NaN	0.27236	1	16623	16623		20.688	13.557	1	164610			16519	5969	9601	9799	13059	13059					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.88909721486664	3	411.889097	1232.64546	1.7633	0.00072629	-1.0398	-0.00042829	0.7235	0.000298	411.8887931430524	16.946	0.3838	16.933	16.861	17.245	-0.013294	1443	97	0.7487872	0.059337437	0.7472678	454.9021	0	36.048584						575	17	2	NaN	NaN	NaN	0.1507	1	16624	16624		28.495	23.478	1	172830			16520	5969	9601	9799	13060	13060					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.330007589	2	617.330008	1232.64546	1.1731	0.0007242	-0.27274	-0.00016837	0.90037	0.00055583	617.8314942062402	16.778	0.21562	16.765	16.693	16.909	-0.013294	1134	67	0.9387595	0.040372968	0.93724006	380.21265	0	16.351715						216	10	2	NaN	NaN	NaN	0.28943	1	16625	16625		21.771	12.025	1	23937			16521	5969	9601	9799	13061	13061					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.330007589	2	617.330008	1232.64546	1.5152	0.00093539	0.89531	0.0005527	2.4105	0.0014881	617.3302656277019	16.658	0.095934	16.645	16.549	16.645	-0.013294	1134	64	0.9387595	0.0385316	0.93724006	380.21265	0	15.605896						85	5	2	NaN	NaN	NaN	0.13384	1	16626	16626		34.454	21.451	1	6637.5			16522	5969	9601	9799	13062	13062					0.03844533216738455
LYWTFLAAFEG	11	Unmodified	_LYWTFLAAFEG_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;ENST00000460773.5_1_X:138814597-138879340:-|nuORF	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3293388869998	2	659.329339	1316.64412	1.8448	0.0012163	-5.8058	-0.003828	-3.9611	-0.0026116	659.3258168077039	23.176	0.072296	23.176	23.152	23.224	0	1101	43	0.95892316	0.025650322	0.95892316	388.10474	0	10.38147						88	4	3	NaN	NaN	NaN	0.77278	1	19059	19059		1.5054	0	1	6365.7			16523	1355	9602	9800	13063	13063					-0.0015314566271626973
LYWTFLAAFEG	11	Unmodified						0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;ENST00000460773.5_1_X:138814597-138879340:-|nuORF	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	659.329339	1316.64412	2.262	0.0014914	-5.3577	-0.0035325	-3.0957	-0.0020411	659.3249909582204	23.199	0.07239	23.186	23.162	23.234	-0.013294	1098	37	0.960755	0.02198124	0.9592356	388.84613		8.896484	0.0051102	0.00034861	0.00015622	NaN	1.5054	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4010.7			16524	1355	9602	9800							-0.0015314566271626973
LYWTSYTTST	10	Unmodified	_LYWTSYTTST_					0	0	0		LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENSG00000123384|ENST00000243077|LRP1	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.7849611731	2	611.784961	1221.55537	1.3696	0.0008379	4.503	0.0027548	5.8726	0.0035927	611.7867394118131	25.491	0.096516	25.479	25.455	25.551	-0.012011	1185	52	0.90755045	0.031235993	0.906031	367.6094	0	12.652344						96	5	2	NaN	NaN	NaN	0.61246	1	16326	16326		14.042	2.8713	1	25915			16525	2374	9603	9801	13064	13064					-0.04654605693008307
LYWWRFLSMWR	11	Unmodified	_LYWWRFLSMWR_					0	0	0		RNF175|p.G110R|1|0.53|ENSG00000145428|chr4:153728280-153728280|C/T|missense_variant	RNF175|p.G110R|1|0.53|ENSG00000145428|chr4:153728280-153728280|C/T|missense_variant	RNF175|p.G110R|1|0.53|ENSG00000145428|chr4:153728280-153728280|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.6149794780667	3	548.614979	1642.82311	2.391	0.0013117	2.0625	0.0011315	4.4535	0.0024432	548.9501254216169	18.316	0.023985	18.316	18.316	18.34	0	1377	25	0.7895419	0.014805436	0.7895419	478.33447	0	8.969696						26	2	2	NaN	NaN	NaN	0.78125	1	20802	20802		0.023298	0	1	1768.7			16526	13661	9604	9802	13065	13065					0.027410404244164965
LYYATKQEED	10	Unmodified	_LYYATKQEED_					0	0	0			REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.29315034595	2	630.29315	1258.57175	1.1313	0.00071307	-5.0605	-0.0031896	-3.9291	-0.0024765	630.2898362920618	27.204	0.19304	27.194	27.122	27.315	-0.010126	1158	70	0.92408	0.0422104	0.9225606	374.18182	0	17.09198						352	9	4	NaN	NaN	NaN	0.2358	1	17190	17190		32.453	3.5572	1	82351	+		16527	8197	9605	9803	13066	13066					-0.04719524526899477
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2952991044	2	614.295299	1226.57605	0.60622	0.0003724	-3.2804	-0.0020151	-2.6742	-0.0016427	614.2939801945238	32.225	0.096519	32.225	32.225	32.321	0	1176	64	0.9130621	0.03856069	0.9130621	369.82504	0	15.618561						128	5	2	NaN	NaN	NaN	0.24994	1	17139	17139		22.126	8.6633	1	15818			16528	4391	9606	9804	13067	13067					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2952991044	2	614.295299	1226.57605	0.71104	0.00043679	-1.7783	-0.0010924	-1.0672	-0.00065559	614.7951410741633	31.742	0.31375	31.742	31.67	31.983	0	1182	124	0.9093879	0.07529336	0.9093879	368.33685	0	30.496704						688	14	4	NaN	NaN	NaN	0.042649	1	17142	17142		50.033	29.584	1	159930			16529	4391	9606	9804	13068	13068					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2952991044	2	614.295299	1226.57605	1.4877	0.00091387	-1.7104	-0.0010507	-0.22276	-0.00013684	614.2940739246895	30.56	0.38614	30.56	30.439	30.825	0	1170	124	0.91673553	0.07530153	0.91673553	371.31293	0	30.5						1660	17	6	NaN	NaN	NaN	0.0055068	1	17144	17144		101.55	54.514	1	1952400			16530	4391	9606	9804	13069	13069					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.2952991044	2	614.295299	1226.57605	1.6222	0.00099653	-2.3205	-0.0014255	-0.69825	-0.00042893	614.2934299818609	30.559	0.36189	30.553	30.48	30.842	-0.0057564	1167	133	0.91857195	0.080780864	0.9170525	372.05676	0	32.71933						1516	16	5	NaN	NaN	NaN	0.0055068	1	16454	16454		101.55	67.856	1	1963300			16531	4391	9606	9804	13070	13070					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.2952991044	2	614.295299	1226.57605	0.81937	0.00050334	-0.72824	-0.00044735	0.091133	5.5982E-05	614.7957088740474	30.896	0.21727	30.891	30.866	31.084	-0.0057545	1176	100	0.9130621	0.060595453	0.91154265	369.82504	0	24.543457						463	10	2	NaN	NaN	NaN	0.078597	1	16455	16455		38.918	23.455	1	92721			16532	4391	9606	9804	13071	13071					-0.02817970522687574
LYYDVMWEI	9	Unmodified	_LYYDVMWEI_					0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.2888251305001	2	616.288825	1230.5631	1.5571	0.00095961	6.5645	0.0040457	8.1216	0.0050053	616.2928252184671	29.763	0.31371	29.763	29.715	30.029	0	1182	106	0.9093879	0.064253986	0.9093879	368.32352	0	26.024384						798	14	5	NaN	NaN	NaN	0.014943	1	17265	17265		78.398	36.613	1	295790	+		16533	13516	9607	9805	13072	13072					-0.04296169697067853
LYYDVMWEI	9	Unmodified	_LYYDVMWEI_					0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.2888251305001	2	616.288825	1230.5631	1.0171	0.00062685	8.0436	0.0049572	9.0608	0.005584	616.2937567114864	29.786	0.21716	29.779	29.707	29.924	-0.0070648	1179	100	0.9112251	0.06058234	0.90970564	369.06763	0	24.537292						752	10	4	NaN	NaN	NaN	0.023074	1	16554	16554		68.108	31.874	1	276910	+		16534	13516	9607	9805	13073	13073					-0.04296169697067853
LYYDVMWEI	9	Unmodified						0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.288825	1230.5631	1.5571	0.00095961	6.5645	0.0040457	8.1216	0.0050053	616.2928252184671	29.763	0.31371	29.763	29.715	30.029	0	1182	106	0.9093879	0.064253986	0.9093879	368.32352		26.024384	-0.0080932	-0.0009005	-0.00015889	NaN	78.398	798	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295790	+		16535	13516	9607	9805							-0.04296169697067853
LYYDVMWEI	9	Unmodified						0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.288825	1230.5631	1.0171	0.00062685	8.0436	0.0049572	9.0608	0.005584	616.2937567114864	29.786	0.21716	29.779	29.707	29.924	-0.0070648	1179	100	0.9112251	0.06058234	0.90970564	369.06763		24.537292	0.0080932	0.00092259	0.00015889	NaN	78.398	752	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276910	+		16536	13516	9607	9805							-0.04296169697067853
LYYEYWST	8	Unmodified	_LYYEYWST_					0	0	0		ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.75039007425	2	562.75039	1123.48623	0.64851	0.00036495	2.3169	0.0013038	2.9654	0.0016688	562.7511754860728	35.553	0.096508	35.553	35.553	35.65	0.00052643	1224	49	0.883646	0.029447913	0.88212657	358.2756	0	11.939697						142	5	4	NaN	NaN	NaN	0.81807	1	13392	13392		6.794	0.54379	1	15908			16537	2639	9608	9806	13074	13074					-0.07057644921906103
LYYIGGEVF	9	Unmodified	_LYYIGGEVF_					0	0	0		nc|ENSG00000166949|P84022-4|SMAD3;nc|ENSG00000166949|P84022-3|SMAD3;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	nc|ENSG00000166949|P84022-4|SMAD3	nc|ENSG00000166949|P84022-4|SMAD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5349745661	1	1060.53497	1059.5277	1.9232	0.0020396	0.92631	0.00098238	2.8495	0.003022	1060.5364467702582	30.342	0.12067	30.342	30.294	30.415	0	108	91	1.5546752	0.053066015	1.5546752	315.40704	0	10.765839						227	6	2	NaN	NaN	NaN	0.062836	1	11066	11066		41.46	14.729	1	36874			16538	4516	9609	9807	13075	13075					0.00031535837410956447
LYYIGGEVF	9	Unmodified	_LYYIGGEVF_					0	0	0		nc|ENSG00000166949|P84022-4|SMAD3;nc|ENSG00000166949|P84022-3|SMAD3;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	nc|ENSG00000166949|P84022-4|SMAD3	nc|ENSG00000166949|P84022-4|SMAD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5349745661	1	1060.53497	1059.5277	1.1687	0.0012395	0.51487	0.00054604	1.6836	0.0017855	1060.5346848563456	30.341	0.14474	30.335	30.263	30.407	-0.0064106	105	97	1.5564433	0.05660975	1.5549239	315.76578	0	11.484772						241	7	2	NaN	NaN	NaN	0.032417	1	10833	10833		55.947	29.216	1	35950			16539	4516	9609	9807	13076	13076					0.00031535837410956447
LYYILKIISS	10	Unmodified	_LYYILKIISS_					0	0	0		tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1	tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1	tr|U7SQ35|U7SQ35_FUSNUDUF374domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01674PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.8655572178001	2	606.865557	1211.71656	1.0853	0.00065865	7.8075	0.0047381	8.8928	0.0053967	606.8708149148018	31.765	0.048319	31.761	31.737	31.785	-0.0044155	1116	49	0.94976085	0.02933681	0.9482414	384.74188	0	11.884155						38	3	2	NaN	NaN	NaN	0.77832	1	16102	16102		0.92586	0.23471	1	2689.4			16540	13808	9610	9808	13077	13077					0.11917188410893687
LYYLNFEFE	9	Unmodified	_LYYLNFEFE_					0	0	0			REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.2924220644501	2	619.292422	1236.57029	0.66946	0.00041459	4.5728	0.0028319	5.2422	0.0032465	619.7962569896672	22.187	0.24117	22.173	22.053	22.294	-0.013731	1164	67	0.9204082	0.04037732	0.91888875	372.76694	0	16.352875						343	11	4	NaN	NaN	NaN	0.18779	1	16708	16708		26.115	0.314	1	33076	+		16541	9570	9611	9809	13078	13078					-0.0385311382499367
LYYLSSLP	8	Unmodified	_LYYLSSLP_					0	0	0		ENST00000604263.1_1_7:72233822-72234023:+|nuORF	ENST00000604263.1_1_7:72233822-72234023:+|nuORF	ENST00000604263.1_1_7:72233822-72234023:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.26039365455	2	478.260394	954.506234	1.7331	0.00082887	4.934	0.0023597	6.6671	0.0031886	478.2629919648079	16.326	0.2159	16.326	16.278	16.494	0	1374	88	0.791392	0.053602874	0.791392	321.55865	0	21.779968						283	10	2	NaN	NaN	NaN	0.62311	1	7198	7198		23.85	0.51602	1	37547			16542	7777	9612	9810	13079	13079					0.027161508087147013
LYYTRFQLL	9	Unmodified	_LYYTRFQLL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8398737835502	2	608.839874	1215.66519	0.97635	0.00059444	-2.0537	-0.0012504	-1.0774	-0.00065595	608.8382486352714	27.398	0.12071	27.398	27.374	27.495	0	1128	37	0.9424274	0.022005022	0.9424274	381.75726	0	8.913757						134	6	4	NaN	NaN	NaN	0.26848	1	16885	16885		28.495	2.3803	1	14609			16543	4110	9613	9811	13080	13080					0.0659886443686446
MAAAAFAEK	9	Unmodified	_MAAAAFAEK_					0	0	0		nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.2285705974	2	455.228571	908.442588	1.6941	0.00077122	-1.4282	-0.00065017	0.26589	0.00012104	455.22827746627564	15.724	0.19174	15.711	15.663	15.855	-0.012611	1380	55	0.7876915	0.0332942	0.78617203	320.28537	0	13.537842						143	9	3	NaN	NaN	NaN	0.10945	1	6088	6088		34.454	19.279	1	12787			16544	1305	9614	9812	13081	13081					-0.015295329000309721
MAAAAFAEK	9	Unmodified						0	0	0		nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	455.228571	908.442588	1.098	0.00049983	-2.2493	-0.001024	-1.1514	-0.00052413	455.228187535502	15.702	0.168	15.702	15.678	15.846	0	1386	43	0.78399014	0.025909483	0.78399014	318.78036		10.535156	-0.00459	-0.00047701	-0.001091	NaN	34.454	153	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13463			16545	1305	9614	9812							-0.015295329000309721
MAAEDLEL	8	Unmodified	_MAAEDLEL_					0	0	0		ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	891.4128105199001	1	891.412811	890.405534	1.8716	0.0016684	0.1815	0.00016179	2.0531	0.0018302	891.4131998168737	25.081	0.1689	25.081	25.057	25.226	0	405	61	1.3786905	0.035735965	1.3786905	280.3859	0	7.2676697						194	8	3	NaN	NaN	NaN	0.27293	1	5935	5935		44.247	15.58	1	24449			16546	3052	9615	9813	13082	13082					-0.04405249236447162
MAAEDLEL	8	Unmodified	_MAAEDLEL_					0	0	0		ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	891.4128105199001	1	891.412811	890.405534	1.5967	0.0014233	-0.30338	-0.00027044	1.2933	0.0011529	891.412622901745	25.081	0.19303	25.069	25.021	25.214	-0.012011	399	55	1.382264	0.032162428	1.3807446	281.11267	0	6.540924						213	9	3	NaN	NaN	NaN	0.30832	1	5815	5815		41.46	7.7618	1	26034			16547	3052	9615	9813	13083	13083					-0.04405249236447162
MAAGSGDM	8	Unmodified	_MAAGSGDM_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.2749368300001	1	739.274937	738.26766	1.4298	0.001057	4.4449	0.003286	5.8746	0.004343	739.2790079391822	32.32	0.21724	32.316	32.22	32.437	-0.0037613	669	175	1.2206948	0.1046015	1.2191753	249.03119	0	21.339508						667	10	4	NaN	NaN	NaN	0.84207	1	3810	3810		3.5732	0	1	254890			16548	5011	9616	9814	13084	13084					-0.11194276036701467
MAAGSGDM	8	Unmodified						0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.274937	738.26766	1.5209	0.0011243	3.9946	0.0029531	5.5155	0.0040775	739.2787453863549	32.345	0.31372	32.345	32.128	32.442	0	672	178	1.2188909	0.1063993	1.2188909	248.66318		21.706268	0.014504	-0.00015398	-0.00014226	NaN	3.5732	759	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255920			16549	5011	9616	9814							-0.11194276036701467
MAAGVLGG	8	Unmodified	_MAAGVLGG_					0	0	0			REV__ENSG00000119723|ENST00000334571|COQ6	REV__ENSG00000119723|ENST00000334571|COQ6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021002	1	675.349422	674.342146	1.6839	0.0011372	2.0366	0.0013754	3.7205	0.0025127	675.3506497031974	23.2	0.048225	23.2	23.2	23.248	0	768	94	1.1610622	0.056096554	1.1610622	237.27464	0	11.463882						106	3	2	NaN	NaN	NaN	0.84876	1	2708	2708		0.39566	0	1	8128.9	+		16550	9297	9617	9815	13085	13085					-0.008051451630080919
MAAKQPPPLM	10	Unmodified	_MAAKQPPPLM_					0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2881052365	2	542.288105	1082.56166	1.6059	0.00087086	-6.5623	-0.0035587	-4.9564	-0.0026878	542.2850384156243	19.3	0.095949	19.3	19.276	19.372	0	1230	58	0.8799654	0.03498262	0.8799654	356.94678	0	14.190247						101	5	2	NaN	NaN	NaN	0.76548	1	12102	12102		3.5698	1.3934	1	6642			16551	4991	9618	9816	13086	13086					0.023679177331587198
MAAKQPPPLM	10	Unmodified						0	0	0		ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	ENSG00000175274|ENST00000525680|TP53I11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.288105	1082.56166	1.7878	0.00096951	-8.2841	-0.0044923	-6.4962	-0.0035228	542.7854699878609	19.178	0.072111	19.164	19.092	19.164	-0.014141	1242	55	0.87260187	0.033150375	0.8710824	353.95987		13.4470215	-0.068142	-0.00096187	-0.0044415	NaN	3.5698	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6907.4			16552	4991	9618	9816							0.023679177331587198
MAATGDVAL	9	Unmodified	_MAATGDVAL_					0	0	0		SYNE2-ITPK1|1|fusion;ENSG00000100605|ENST00000267615|ITPK1	SYNE2-ITPK1|1|fusion	SYNE2-ITPK1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.4182302488001	1	848.41823	847.410954	1.4323	0.0012152	-0.18557	-0.00015744	1.2467	0.0010577	848.417725816009	21.681	0.072237	21.667	21.643	21.715	-0.013895	450	52	1.3518641	0.030435681	1.3503447	275.14236	0	6.1944885						74	4	2	NaN	NaN	NaN	0.12945	1	5223	5223		31.561	2.8945	1	6654.7			16553	13711	9619	9817	13087	13087					-0.018855256539723086
MADAGILRL	9	Unmodified	_MADAGILRL_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.27076976309996	2	480.27077	958.526987	1.4593	0.00070086	-5.0628	-0.0024315	-3.6035	-0.0017306	480.2685200561059	24.502	0.048182	24.502	24.502	24.55	0	1323	31	0.8228144	0.018466711	0.8228144	334.30637	0	7.50296						53	3	3	NaN	NaN	NaN	0.60736	1	7297	7297		5.1889	1.2204	1	3537.6			16554	2832	9620	9818	13088	13088					0.046064179167160546
MADEFHSTL	9	Unmodified	_MADEFHSTL_					0	0	0		ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7316743923501	2	525.731674	1049.4488	1.583	0.00083223	-2.2272	-0.0011709	-0.64418	-0.00033867	525.7301629752889	19.564	0.16803	19.564	19.516	19.684	0	1269	61	0.8560222	0.03687364	0.8560222	347.37213	0	14.963226						181	8	3	NaN	NaN	NaN	0.10956	1	10594	10594		34.439	20.976	1	25871			16555	6987	9621	9819	13089	13089					-0.07395059459145159
MADEFHSTL	9	Unmodified	_MADEFHSTL_					0	0	0		ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	ENST00000434600.6_2_X:119590527-119590569:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7316743923501	2	525.731674	1049.4488	1.2936	0.00068007	-0.4337	-0.00022801	0.85986	0.00045206	525.7312036639836	19.563	0.12039	19.549	19.524	19.645	-0.014141	1269	58	0.8560222	0.03502804	0.85450274	347.37213	0	14.214294						203	6	4	NaN	NaN	NaN	0.20577	1	10375	10375		24.961	0	1	23780			16556	6987	9621	9819	13090	13090					-0.07395059459145159
MADGNQAQL	9	Unmodified	_MADGNQAQL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4251065407001	1	947.425107	946.41783	1.7934	0.0016992	1.2041	0.0011408	2.9976	0.00284	947.426125154692	16.398	0.11992	16.398	16.35	16.47	0	354	91	1.4090419	0.05355847	1.4090419	286.30026	0	10.882416						185	6	2	NaN	NaN	NaN	0.026469	1	6984	6984		63.731	26.428	1	15645			16557	406	9622	9820	13091	13091					-0.05752212773404608
MADGNQAQL	9	Unmodified	_MADGNQAQL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4251065407001	1	947.425107	946.41783	1.8995	0.0017996	1.234	0.0011691	3.1335	0.0029688	947.4251025967209	16.371	0.23969	16.358	16.334	16.574	-0.012995	354	97	1.4090419	0.057122946	1.4075224	286.30026	0	11.606689						239	11	2	NaN	NaN	NaN	0.01966	1	6851	6851		72.428	30.644	1	21825			16558	406	9622	9820	13092	13092					-0.05752212773404608
MADIEYRL	8	Unmodified	_MADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.75240983445	2	505.75241	1009.49027	1.8461	0.00093368	-1.517	-0.00076723	0.32911	0.00016645	505.7518562688343	21.874	0.14462	21.874	21.85	21.994	0	1257	43	0.86339295	0.025791943	0.86339295	350.54272	0	10.47171						170	7	3	NaN	NaN	NaN	0.67765	1	8951	8951		20.449	4.986	1	24591			16559	1809	9623	9821	13093	13093					-0.014098786998374635
MADIEYRL	8	Unmodified	_MADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.75240983445	2	505.75241	1009.49027	1.126	0.00056948	-1.5831	-0.00080067	-0.45713	-0.00023119	505.7516308878798	21.874	0.19264	21.86	21.836	22.028	-0.013895	1257	52	0.86339295	0.03132391	0.8618735	350.54272	0	12.717712						145	9	2	NaN	NaN	NaN	0.38377	1	8782	8782		37.302	4.8496	1	27145			16560	1809	9623	9821	13094	13094					-0.014098786998374635
MADIQQKSR	9	Unmodified	_MADIQQKSR_					0	0	0			REV__nc|ENSG00000148835|Q15542-2|TAF5	REV__nc|ENSG00000148835|Q15542-2|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7794902522	2	538.77949	1075.54443	1.1448	0.00061677	3.7056	0.0019965	4.8504	0.0026133	538.7817661989802	24.647	0.14471	24.634	24.586	24.731	-0.012394	1239	67	0.87444305	0.04051274	0.8729236	354.73575	0	16.434814						301	7	3	NaN	NaN	NaN	0.21451	1	11486	11486		24.4	3.8869	1	61205	+		16561	9984	9624	9822	13095	13095					0.009677134517232844
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7815016249001	2	538.781502	1075.54845	1.6395	0.00088335	-2.0949	-0.0011287	-0.45535	-0.00024534	538.7803243521503	24.647	0.24124	24.647	24.55	24.791	0	1236	85	0.876284	0.051578403	0.876284	355.48257	0	20.923859						359	11	3	NaN	NaN	NaN	0.21199	1	11794	11794		24.562	7.7037	1	67451			16562	5359	9625	9823	13096	13096					0.013698029454417338
MADPNIRFL	9	Unmodified						0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.781502	1075.54845	1.1448	0.00061677	-0.02758	-1.486E-05	1.1172	0.00060191	538.7817661989802	24.647	0.14471	24.634	24.586	24.731	-0.012394	1239	67	0.87444305	0.04051274	0.8729236	354.73575		16.434814	-0.0062555	0.0010424	-0.0016802	NaN	24.562	301	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61205			16563	5359	9625	9823							0.013698029454417338
MADSDFLAL	9	Unmodified	_MADSDFLAL_					0	0	0		nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-6|SCP2	nc|ENSG00000116171|P22307-6|SCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4550096856	1	982.45501	981.447733	1.7816	0.0017504	1.2178	0.0011964	2.9994	0.0029468	982.4558146617602	30.535	0.16897	30.535	30.487	30.656	0	234	103	1.4802408	0.060410023	1.4802408	300.61304	0	12.26828						352	8	3	NaN	NaN	NaN	0.049695	1	7928	7928		47.04	8.4323	1	81697			16564	2068	9626	9824	13097	13097					-0.04373273828082347
MADSDFLAL	9	Unmodified	_MADSDFLAL_					0	0	0		nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-6|SCP2	nc|ENSG00000116171|P22307-6|SCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4550096856	1	982.45501	981.447733	1.5011	0.0014748	1.4039	0.0013792	2.905	0.002854	982.4567417236599	30.51	0.19303	30.505	30.48	30.673	-0.0057545	234	97	1.4802408	0.056856394	1.4787214	300.61304	0	11.5466						450	9	4	NaN	NaN	NaN	0.12945	1	7754	7754		31.561	1.9627	1	91286			16565	2068	9626	9824	13098	13098					-0.04373273828082347
MADSDFLAL	9	Oxidation (M)	_M(Oxidation (M))ADSDFLAL_		M(1)ADSDFLAL		M(53)ADSDFLAL	0	0	1		nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-6|SCP2	nc|ENSG00000116171|P22307-6|SCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4499243077	1	998.449924	997.442648	1.8387	0.0018358	2.1081	0.0021048	3.9468	0.0039407	998.4521928647586	29.063	0.19311	29.063	28.991	29.184	0	243	82	1.4749115	0.04798031	1.4749115	299.46417	0	9.741852						296	9	2	NaN	NaN	NaN	0.03623	1	8468	8468		52.758	27.797	1	60500			16566	2068	9626	9825	13099	13099		239			-0.05617577690691178
MADSDFLAL	9	Oxidation (M)	_M(Oxidation (M))ADSDFLAL_		M(1)ADSDFLAL		M(53)ADSDFLAL	0	0	1		nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-6|SCP2	nc|ENSG00000116171|P22307-6|SCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4499243077	1	998.449924	997.442648	1.4126	0.0014104	0.78821	0.00078699	2.2008	0.0021974	998.4509818787827	29.062	0.28959	29.055	28.982	29.272	-0.0077209	243	76	1.4749115	0.044426084	1.473392	299.46417	0	9.020233						315	13	2	NaN	NaN	NaN	0.03623	1	8290	8290		52.758	26.027	1	62673			16567	2068	9626	9825	13100	13100		239			-0.05617577690691178
MAEGFRTVL	9	Unmodified	_MAEGFRTVL_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.26822707415	2	512.268227	1022.5219	0.9069	0.00046458	-1.0629	-0.00054449	-0.15601	-7.9919E-05	512.2684467447099	22.187	0.12065	22.173	22.149	22.27	-0.013731	1320	67	0.824661	0.04060483	0.8231416	334.75992	0	16.483002						206	6	3	NaN	NaN	NaN	0.25424	1	9273	9273		21.85	3.8807	1	27686			16568	1801	9627	9826	13101	13101					0.01154114054099864
MAEGGELEF	9	Unmodified	_MAEGGELEF_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000574752.5_1_17:2340122-2367575:-|nuORF	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4186241793001	1	982.418624	981.411348	1.7926	0.001761	1.3527	0.0013289	3.1453	0.00309	982.4201649035887	24.84	0.096518	24.84	24.816	24.912	0	327	37	1.425088	0.021384716	1.425088	289.41254	0	4.3428955						84	5	2	NaN	NaN	NaN	0.074859	1	7919	7919		39.459	17.624	1	7932.8			16569	2544	9628	9827	13102	13102					-0.08010150724783216
MAEGGELEF	9	Unmodified						0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000574752.5_1_17:2340122-2367575:-|nuORF	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	982.418624	981.411348	1.9416	0.0019075	-1.1952	-0.0011742	0.74645	0.00073333	982.4171197765866	24.84	0.096489	24.827	24.803	24.9	-0.012392	324	43	1.42687	0.024946213	1.4253505	289.7744		5.066162	-0.0062819	-0.0017306	0.00013126	NaN	39.459	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6180			16570	2544	9628	9827							-0.08010150724783216
MAEGKQHAL	9	Unmodified	_MAEGKQHAL_					0	0	0		ENST00000487133.1_1_X:119742243-119746116:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.7502014965	2	492.750201	983.48585	1.0064	0.00049591	0.32737	0.00016131	1.3338	0.00065722	492.7503970794699	11.382	0.19213	11.374	11.302	11.494	-0.0075302	1308	34	0.83204526	0.020303547	0.8305259	337.93546	0	8.246277						101	9	2	NaN	NaN	NaN	0.2961	1	7829	7829		19.164	8.5586	1	9148.4			16571	6039	9629	9828	13103	13103					-0.006553431227530382
MAEYQELSL	9	Unmodified	_MAEYQELSL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5026881597	1	1083.50269	1082.49541	2.0842	0.0022582	-1.3908	-0.0015069	0.6934	0.0007513	1083.5012745671258	25.926	0.14477	25.926	25.877	26.022	0	99	127	1.5599792	0.07430029	1.5599792	316.3968	0	15.069672						455	7	4	NaN	NaN	NaN	0.030545	1	12077	12077		58.398	11.358	1	53719			16572	5676	9630	9829	13104	13104					-0.04253619627866101
MAEYQELSL	9	Unmodified	_MAEYQELSL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5026881597	1	1083.50269	1082.49541	2.2978	0.0024897	-1.6184	-0.0017535	0.67945	0.00073618	1083.5009477829271	25.925	0.28965	25.914	25.865	26.155	-0.0116	99	124	1.5599792	0.07251966	1.5584598	316.3968	0	14.708527						500	13	4	NaN	NaN	NaN	0.03533	1	11763	11763		53.14	19.715	1	54184			16573	5676	9630	9829	13105	13105					-0.04253619627866101
MAEYQELSL	9	Oxidation (M)	_M(Oxidation (M))AEYQELSL_		M(1)AEYQELSL		M(43)AEYQELSL	0	0	1		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.4976027818	1	1099.4976	1098.49033	1.863	0.0020483	0.39897	0.00043867	2.2619	0.002487	1099.4974315355316	24.574	0.096516	24.562	24.538	24.634	-0.012392	93	79	1.5635144	0.045971036	1.5619949	317.05566	0	9.322205						120	5	2	NaN	NaN	NaN	0.059222	1	12442	12442		42.995	21.224	1	10311			16574	5676	9630	9830	13106	13106		581			-0.05497923490497669
MAFGGGLL	8	Unmodified	_MAFGGGLL_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-3|SLC13A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3963725947002	1	765.396373	764.389096	1.5808	0.0012099	7.1904	0.0055035	8.7712	0.0067135	765.4020849083045	26.939	0.09655	26.928	26.904	27.001	-0.010645	501	52	1.3214091	0.030484319	1.3198897	269.40967	0	6.215149						81	5	2	NaN	NaN	NaN	0.84651	1	4201	4201		1.6704	0	1	6551.7	+		16575	10164	9631	9831	13107	13107					-0.0025228561187304877
MAFGGGWGAFL	11	Unmodified	_MAFGGGWGAFL_					0	0	0			REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2629447310001	2	557.262945	1112.51134	1.476	0.00082251	-4.1369	-0.0023053	-2.6609	-0.0014828	557.2609430546271	27.905	0.16891	27.905	27.857	28.026	0	1269	43	0.8560222	0.02580595	0.8560222	347.11703	0	10.464325						147	8	2	NaN	NaN	NaN	0.70904	1	13363	13363		6.8632	0	1	20173	+		16576	12388	9632	9832	13108	13108					-0.040418686003249604
MAFIGFAS	8	Unmodified	_MAFIGFAS_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4069372810001	1	843.406937	842.399661	1.4905	0.0012571	-3.4899	-0.0029434	-1.9994	-0.0016863	843.4039100968735	30.391	0.12064	30.391	30.391	30.511	0	405	58	1.3786905	0.033961892	1.3786905	280.62894	0	6.912842						114	6	2	NaN	NaN	NaN	0.79379	1	5297	5297		10.052	0.92837	1	10180	+		16577	11268	9633	9833	13109	13109					-0.0278430295745693
MAFIGFAS	8	Unmodified						0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	843.406937	842.399661	1.4905	0.0012571	-3.4899	-0.0029434	-1.9994	-0.0016863	843.4039100968735	30.391	0.12064	30.391	30.391	30.511	0	405	58	1.3786905	0.033961892	1.3786905	280.62894		6.912842	-0.0083549	0.00043664	0.00075972	NaN	10.052	114	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10180	+		16578	11268	9633	9833							-0.0278430295745693
MAGCNMPHCW	10	Unmodified	_MAGCNMPHCW_					0	0	0		ENST00000466565.1_1_3:152017018-152017201:+|nuORF	ENST00000466565.1_1_3:152017018-152017201:+|nuORF	ENST00000466565.1_1_3:152017018-152017201:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.208474707	2	575.208475	1148.4024	1.4239	0.00081903	-7.3319	-0.0042174	-5.908	-0.0033984	575.2044175932532	26.77	0.16943	26.77	26.722	26.891	0	1266	58	0.85786515	0.03502047	0.85786515	347.7313	0	14.195374						257	8	4	NaN	NaN	NaN	0.75966	1	14743	14743		3.9685	0	1	18469			16579	7113	9634	9834	13110	13110					-0.1658686215812395
MAGDIYSVFR	10	Unmodified	_MAGDIYSVFR_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7842412791001	2	579.784241	1157.55393	1.674	0.00097058	-3.9468	-0.0022883	-2.2728	-0.0013177	579.7825855752948	24.888	0.1448	24.888	24.816	24.96	0	1275	58	0.85233563	0.03501284	0.85233563	345.4575	0	14.1909485						106	7	2	NaN	NaN	NaN	0.71345	1	15063	15063		7.1304	2.2206	1	13201			16580	3609;7099	9635	9835	13111	13111					-0.018545182627349277
MAGDIYSVFR	10	Unmodified	_MAGDIYSVFR_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7842412791001	2	579.784241	1157.55393	1.4343	0.00083159	-3.6729	-0.0021295	-2.2386	-0.0012979	579.7811427607634	24.864	0.096521	24.851	24.851	24.948	-0.012392	1275	97	0.85233563	0.058927655	0.8508162	345.4575	0	23.88379						140	5	3	NaN	NaN	NaN	0.57785	1	14564	14564		16.226	8.6855	1	14203			16581	3609;7099	9635	9835	13112	13112					-0.018545182627349277
MAGIFFLPF	9	Unmodified	_MAGIFFLPF_					0	0	0		nc|ENSG00000166105|Q8NCI6-4|GLB1L3;ENSG00000166105|ENST00000431683|GLB1L3	nc|ENSG00000166105|Q8NCI6-4|GLB1L3	nc|ENSG00000166105|Q8NCI6-4|GLB1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.77515664925	2	521.775157	1041.53576	1.5512	0.00080938	-2.1754	-0.0011351	-0.62417	-0.00032568	521.7743589278084	26.408	0.072399	26.397	26.349	26.421	-0.011137	1275	40	0.85233563	0.023963928	0.8508162	345.9102	0	9.725464						99	4	3	NaN	NaN	NaN	0.48931	1	10071	10071		10.052	0.30557	1	13031			16582	4448	9636	9836	13113	13113					0.016653915531833263
MAGLLGGG	8	Unmodified	_MAGLLGGG_					0	0	0			REV__ENSG00000141437|ENST00000269205|SLC25A52	REV__ENSG00000141437|ENST00000269205|SLC25A52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021002	1	675.349422	674.342146	1.0983	0.00074174	5.4743	0.0036971	6.5726	0.0044388	675.3531487479574	24.695	0.048227	24.695	24.647	24.695	0	768	109	1.1610622	0.065126896	1.1610622	237.27463	0	13.309326						132	3	2	NaN	NaN	NaN	0.84876	1	2716	2716		0.39566	0	1	9429.6	+		16583	9822	9637	9837	13114	13114					-0.008051451630080919
MAGLLGGG	8	Unmodified						0	0	0			REV__ENSG00000141437|ENST00000269205|SLC25A52	REV__ENSG00000141437|ENST00000269205|SLC25A52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.0983	0.00074174	5.4743	0.0036971	6.5726	0.0044388	675.3531487479574	24.695	0.048227	24.695	24.647	24.695	0	768	109	1.1610622	0.065126896	1.1610622	237.27463		13.309326	0.1874	-0.00032489	-0.0055738	NaN	0.39566	132	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9429.6	+		16584	9822	9637	9837							-0.008051451630080919
MAGLLGGG	8	Unmodified						0	0	0			REV__ENSG00000141437|ENST00000269205|SLC25A52	REV__ENSG00000141437|ENST00000269205|SLC25A52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.0672	0.00072075	6.6652	0.0045013	7.7324	0.0052221	675.3542587262508	24.333	0.048285	24.32	24.272	24.32	-0.012749	747	142	1.1737292	0.08497679	1.1722097	239.86324		17.36583	-0.1874	0.00047941	0.0055738	NaN	0.39566	144	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11163	+		16585	9822	9637	9837							-0.008051451630080919
MAGNEYVF	8	Unmodified	_MAGNEYVF_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|5|fusion;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;UBE2G1-ANKFY1|2|fusion	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4025801846001	1	930.40258	929.395304	1.6259	0.0015127	0.091268	8.4916E-05	1.7171	0.0015976	930.4026592924397	24.406	0.19291	24.406	24.357	24.55	0	345	88	1.4143922	0.051737428	1.4143922	287.46292	0	10.515167						357	9	4	NaN	NaN	NaN	0.49126	1	6575	6575		31.561	5.4461	1	50056			16586	5431	9638	9838	13115	13115					-0.07221812171019337
MAGNEYVF	8	Unmodified	_MAGNEYVF_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|5|fusion;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;UBE2G1-ANKFY1|2|fusion	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4025801846001	1	930.40258	929.395304	1.1943	0.0011112	0.35497	0.00033027	1.5492	0.0014414	930.4032337364672	24.405	0.19304	24.393	24.344	24.537	-0.012747	348	88	1.412609	0.051737428	1.4110895	287.10046	0	10.515167						315	9	3	NaN	NaN	NaN	0.202	1	6442	6442		49.833	14.536	1	45904			16587	5431	9638	9838	13116	13116					-0.07221812171019337
MAGPGPAK	8	Unmodified	_MAGPGPAK_					0	0	0			REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.3759715036	1	728.375972	727.368695	1.0635	0.00077463	8.826	0.0064287	9.8895	0.0072033	728.3836665525603	43.849	0.16773	43.849	43.825	43.992	0	534	46	1.3016734	0.026932359	1.3016734	265.62396	0	5.4959106						107	8	2	NaN	NaN	NaN	0.84876	1	3730	3730		0.39566	0	1	9048.1	+		16588	12207	9639	9839	13117	13117					-0.005894562717003282
MAGPGPGP	8	Unmodified	_MAGPGPGP_					0	0	0		nc|ENSG00000172780|Q86YS6-2|RAB43;ENSG00000172780|ENST00000315150|RAB43	nc|ENSG00000172780|Q86YS6-2|RAB43	nc|ENSG00000172780|Q86YS6-2|RAB43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.16269937015	2	342.162699	682.310846	1.2966	0.00044365	5.8194	0.0019912	7.116	0.0024348	342.16453132081716	30.632	0.14481	30.632	30.584	30.728	0	1476	73	0.72837335	0.044590056	0.72837335	297.6229	0	18.220093						126	7	2	NaN	NaN	NaN	0.84651	1	2886	2886		1.6704	1.2747	1	14487			16589	4854	9640	9840	13118	13118					-0.04301718197120863
MAGVGPGG	8	Unmodified	_MAGVGPGG_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.3024722095003	1	645.302472	644.295196	1.6413	0.0010592	6.4674	0.0041735	8.1088	0.0052326	645.3064211084098	34.879	0.048233	34.879	34.831	34.879	0	735	43	1.1809633	0.025313497	1.1809633	241.56525	0	5.1778717						43	3	2	NaN	NaN	NaN	0.84876	1	1874	1874		0.39566	0	1	3053.3			16590	7911	9641	9841	13119	13119					-0.04118004714155177
MAHADPTEL	9	Unmodified	_MAHADPTEL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.7263920491999	2	492.726392	983.438231	1.9888	0.00097995	-1.4317	-0.00070542	0.55716	0.00027453	492.7257550354382	16.59	0.23993	16.59	16.518	16.758	0	1332	70	0.8172735	0.042498827	0.8172735	331.93613	0	17.260925						381	11	3	NaN	NaN	NaN	0.17818	1	7996	7996		26.732	1.7706	1	75690			16591	2653	9642	9842	13120	13120					-0.05415042113622803
MAHADPTEL	9	Unmodified	_MAHADPTEL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.7263920491999	2	492.726392	983.438231	1.3878	0.0006838	-0.2437	-0.00012008	1.1441	0.00056373	492.7264481970861	16.611	0.26372	16.598	16.502	16.765	-0.012993	1329	73	0.81912065	0.044348955	0.8176012	332.68634	0	18.01236						361	12	3	NaN	NaN	NaN	0.094712	1	7820	7820		36.586	12.736	1	78162			16592	2653	9642	9842	13121	13121					-0.05415042113622803
MAHFEEMGM	9	Unmodified	_MAHFEEMGM_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.70883046025	2	541.70883	1081.40311	2.1822	0.0011821	-2.0301	-0.0010997	0.1521	8.2391E-05	541.7080891829362	21.031	0.04817	21.017	20.993	21.041	-0.014086	1260	28	0.8615505	0.016581416	0.8600311	349.48172	0	6.7261353						36	3	2	NaN	NaN	NaN	0.47587	1	11712	11712		10.605	3.0646	1	2205.4			16593	1080	9643	9843	13122	13122					-0.13433744237408973
MAHLPDVCVN	10	Unmodified	_MAHLPDVCVN_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.75716924885	2	549.757169	1097.49979	1.1451	0.00062952	-1.4429	-0.00079323	-0.29777	-0.0001637	549.7577165369191	30.124	0.048269	30.118	30.094	30.142	-0.0064106	1290	94	0.84311575	0.05721283	0.8415963	341.94067	0	23.203705						109	3	3	NaN	NaN	NaN	0.73444	1	12396	12396		5.6942	0.50528	1	8712.5			16594	6112	9644	9844	13123	13123					-0.045064336859695686
MAIADEVEI	9	Unmodified	_MAIADEVEI_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4812244361	1	990.481224	989.473948	1.8817	0.0018638	-0.28281	-0.00028012	1.5989	0.0015836	990.480958868397	27.012	0.1448	27.012	26.964	27.109	0	279	121	1.4535767	0.0710932	1.4535767	295.1648	0	14.436249						300	7	4	NaN	NaN	NaN	0.0055068	1	8184	8184		101.55	18.696	1	52790			16595	1116	9645	9845	13124	13124					-0.021210046566011442
MAIADEVEI	9	Unmodified	_MAIADEVEI_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4812244361	1	990.481224	989.473948	1.4267	0.0014131	-0.99374	-0.00098428	0.43293	0.00042881	990.4804139198136	27.035	0.14483	27.025	26.953	27.098	-0.010124	279	76	1.4535767	0.04447341	1.4520572	295.16483	0	9.030823						306	7	4	NaN	NaN	NaN	0.049695	1	8020	8020		47.04	13.342	1	53474			16596	1116	9645	9845	13125	13125					-0.021210046566011442
MAIADEVEI	9	Oxidation (M)	_M(Oxidation (M))AIADEVEI_		M(1)AIADEVEI		M(50)AIADEVEI	0	0	1		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4761390582	1	1006.47614	1005.46886	1.3684	0.0013773	-0.79374	-0.00079888	0.57465	0.00057838	1006.4754630593784	24.381	0.1206	24.381	24.357	24.478	0	276	58	1.4553556	0.033796072	1.4553556	295.46146	0	6.8611755						173	6	2	NaN	NaN	NaN	0.043119	1	8787	8787		49.833	8.0484	1	25600			16597	1116	9645	9846	13126	13126		120			-0.03365308519209975
MAIADEVEI	9	Oxidation (M)	_M(Oxidation (M))AIADEVEI_		M(1)AIADEVEI		M(72)AIADEVEI	0	0	1		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4761390582	1	1006.47614	1005.46886	1.4912	0.0015009	-0.15406	-0.00015506	1.3372	0.0013458	1006.4756815037334	24.429	0.16901	24.417	24.344	24.513	-0.012749	273	64	1.4571344	0.0373497	1.4556149	295.82257	0	7.582611						181	8	2	NaN	NaN	NaN	0.020004	1	8616	8616		71.993	16.045	1	23919			16598	1116	9645	9846	13127	13127		120			-0.03365308519209975
MAIADVTLL	9	Unmodified	_MAIADVTLL_					0	0	0		ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000478388.1_1_6:31999390-31999952:+|nuORF;ENST00000485263.5_1_6:31998272-32000090:+|nuORF;ENST00000468936.5_1_6:31999682-32002424:+|nuORF	ENSG00000244731|ENST00000428956|C4A	ENSG00000244731|ENST00000428956|C4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5277806982002	1	946.527781	945.520504	1.2184	0.0011533	-0.40496	-0.0003833	0.81345	0.00076995	946.529226407971	32.152	0.096512	32.152	32.128	32.225	0	252	58	1.4695803	0.033774614	1.4695803	298.60504	0	6.862671						129	5	3	NaN	NaN	NaN	0.27442	1	6970	6970		20.555	1.4371	1	10406			16599	6021	9646	9847	13128	13128					0.045564799653675436
MAIQLTEEL	9	Unmodified	_MAIQLTEEL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.539073666	1	1047.53907	1046.5318	2.1222	0.0022231	-1.1832	-0.0012395	0.93893	0.00098357	1047.5371643375981	28.339	0.09647	28.339	28.315	28.412	0	156	85	1.5263584	0.049601793	1.5263584	309.71167	0	10.064636						206	5	4	NaN	NaN	NaN	0.01966	1	10487	10487		72.428	30.111	1	23342			16600	3562	9647	9848	13129	13129					0.01039257268826077
MAIQLTEEL	9	Unmodified	_MAIQLTEEL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.539073666	1	1047.53907	1046.5318	1.2655	0.0013256	-1.986	-0.0020804	-0.72055	-0.0007548	1047.5372086731677	28.339	0.12067	28.33	28.305	28.426	-0.0089779	153	88	1.5281296	0.051392436	1.5266101	310.07108	0	10.427948						146	6	2	NaN	NaN	NaN	0.012861	1	10279	10279		84.233	25.997	1	20266			16601	3562	9647	9848	13130	13130					0.01039257268826077
MAISFLTTL	9	Unmodified	_MAISFLTTL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5434307624001	1	996.543431	995.536154	2.0023	0.0019954	-0.98729	-0.00098388	1.015	0.0010115	996.5442538690803	34.565	0.12065	34.565	34.517	34.638	0	186	58	1.5086359	0.033688784	1.5086359	306.31955	0	6.8403015						107	6	2	NaN	NaN	NaN	0.17818	1	8421	8421		26.732	0	1	11276			16602	1811	9648	9849	13131	13131					0.03820766482408544
MAKRRPRS	8	Unmodified	_MAKRRPRS_					0	0	0			REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.29290218870005	2	501.292902	1000.57125	1.5177	0.00076082	-5.2409	-0.0026272	-3.7231	-0.0018664	501.2898104509445	29.401	0.12065	29.401	29.305	29.425	0	1239	91	0.87444305	0.055220783	0.87444305	355.0717	0	22.422668						289	6	3	NaN	NaN	NaN	0.84727	1	8628	8628		1.2418	0	1	71248	+		16603	12877	9649	9850	13132	13132					0.07098866853584695
MAKRRPRS	8	Unmodified						0	0	0			REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.292902	1000.57125	1.5177	0.00076082	-5.2409	-0.0026272	-3.7231	-0.0018664	501.2898104509445	29.401	0.12065	29.401	29.305	29.425	0	1239	91	0.87444305	0.055220783	0.87444305	355.0717		22.422668	0.13698	-4.3023E-05	0.0035218	NaN	1.2418	289	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71248	+		16604	12877	9649	9850							0.07098866853584695
MAKRRPRS	8	Unmodified						0	0	0			REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.292902	1000.57125	1.1715	0.00058727	-4.9408	-0.0024768	-3.7693	-0.0018895	501.290773438995	29.135	0.072393	29.127	29.103	29.175	-0.0077229	1248	67	0.8689189	0.040499628	0.86739945	352.82858		16.445038	-0.13698	0.00025778	-0.0035218	NaN	1.2418	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7057.3	+		16605	12877	9649	9850							0.07098866853584695
MALELMTVL	9	Unmodified	_MALELMTVL_					0	0	0		ENST00000589030.1_1_17:73759945-73761208:-|nuORF;ENST00000592494.1_1_17:73759392-73761232:-|nuORF;GALK1|p.E261Kfs*3|1|0.17|ENSG00000108479|chr17:75762716-75762716|C/-|frameshift_variant;ENSG00000108479|ENST00000588479|GALK1	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5468015808002	1	1020.5468	1019.53953	1.5753	0.0016077	2.4385	0.0024886	4.0139	0.0040963	1020.5518883109305	35.312	0.048321	35.312	35.287	35.336	-4.5776E-05	135	46	1.5387528	0.026556969	1.5372335	312.33414	0	5.3904724						54	3	2	NaN	NaN	NaN	0.31737	1	9165	9165		17.799	6.2505	1	5165.9			16606	1677	9650	9851	13133	13133					0.030536932647692083
MALFEQEVL	9	Unmodified	_MALFEQEVL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.5441590439	1	1079.54416	1078.53688	1.2138	0.0013103	0.67946	0.00073351	1.8932	0.0020438	1079.544642177117	30.704	0.26543	30.704	30.656	30.922	0	102	142	1.5582114	0.08314121	1.5582114	316.05283	0	16.863586						578	12	3	NaN	NaN	NaN	0.017076	1	11914	11914		75.698	27.048	1	173620			16607	2498	9651	9852	13134	13134					0.0007556113146165444
MALFEQEVL	9	Unmodified	_MALFEQEVL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.5441590439	1	1079.54416	1078.53688	1.817	0.0019615	-0.37019	-0.00039964	1.4468	0.0015619	1079.54337922678	30.703	0.31371	30.698	30.649	30.963	-0.0057564	99	133	1.5599792	0.07782197	1.5584598	316.4114	0	15.784668						539	14	3	NaN	NaN	NaN	0.0028258	1	11607	11607		108.53	53.038	1	166640			16608	2498	9651	9852	13135	13135					0.0007556113146165444
MALFEQEVL	9	Oxidation (M)	_M(Oxidation (M))ALFEQEVL_		M(1)ALFEQEVL		M(110)ALFEQEVL	0	0	1		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.539073666	1	1095.53907	1094.5318	2.2356	0.0024492	-1.4495	-0.001588	0.7861	0.0008612	1095.5378754322915	28.074	0.1448	28.074	28.026	28.17	0	93	91	1.5635144	0.053043485	1.5635144	317.0699	0	10.756866						394	7	4	NaN	NaN	NaN	0.0028258	1	12604	12604		108.53	50.332	1	70166			16609	2498	9651	9853	13136	13136		290			-0.011687427311699139
MALFEQEVL	9	Oxidation (M)	_M(Oxidation (M))ALFEQEVL_		M(1)ALFEQEVL		M(76)ALFEQEVL	0	0	1		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.539073666	1	1095.53907	1094.5318	1.4194	0.001555	-0.63585	-0.00069659	0.78355	0.00085841	1095.53865333723	28.073	0.16889	28.064	28.016	28.185	-0.0089779	90	106	1.5652816	0.06189394	1.5637622	317.42828	0	12.551666						355	8	3	NaN	NaN	NaN	0.017076	1	12276	12276		75.698	32.704	1	62259			16610	2498	9651	9853	13137	13137		290			-0.011687427311699139
MALLEAVM	8	Oxidation (M)	_MALLEAVM(Oxidation (M))_		MALLEAVM(1)		M(-53)ALLEAVM(53)	0	0	1		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.4470875362002	1	893.447088	892.439811	1.4621	0.0013063	0.28001	0.00025017	1.7421	0.0015565	893.4485186227852	26.867	0.12066	26.867	26.843	26.964	0	351	61	1.4108255	0.035679102	1.4108255	286.9113	0	7.255829						156	6	3	NaN	NaN	NaN	0.15767	1	5955	5955		53.324	20.187	2	15453			16611	6192	9652	9854	13138	13138		628			-0.01071124349175534
MALLEAVM	8	Oxidation (M)	_MALLEAVM(Oxidation (M))_		MALLEAVM(1)		M(-56)ALLEAVM(56)	0	0	1		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.4470875362002	1	893.447088	892.439811	1.1762	0.0010509	1.5005	0.0013406	2.6766	0.0023914	893.4479902816787	26.866	0.1207	26.856	26.832	26.952	-0.010645	354	76	1.4090419	0.044601202	1.4075224	286.54855	0	9.070282						127	6	2	NaN	NaN	NaN	0.14214	1	5839	5839		55.947	22.249	2	14160			16612	6192	9652	9854	13139	13139		628			-0.01071124349175534
MALLEAVM	8	Unmodified	_MALLEAVM_					0	0	0		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4521729141002	1	877.452173	876.444896	0.63115	0.00055381	1.0961	0.00096177	1.7272	0.0015156	877.453819681435	31.476	0.096535	31.471	31.447	31.544	-0.0044155	348	52	1.412609	0.030319095	1.4110895	287.35358	0	6.1675415						133	5	3	NaN	NaN	NaN	0.23389	1	5627	5627		47.321	16.53	1	13062			16613	6192	9652	9855	13140	13140					0.0017317951343329696
MALLEAVM	8	Unmodified						0	0	0		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	877.452173	876.444896	0.82724	0.00072586	-0.74412	-0.00065293	0.083116	7.2931E-05	877.450886667201	31.477	0.096523	31.477	31.452	31.549	0	348	55	1.412609	0.03210771	1.412609	287.35358		6.531372	0.002738	-0.00077396	0.00075972	NaN	47.321	129	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11603			16614	6192	9652	9855							0.0017317951343329696
MALVQDKST	9	Unmodified	_MALVQDKST_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5081078886002	1	992.508108	991.500831	2.2254	0.0022087	-4.4353	-0.0044021	-2.2099	-0.0021934	992.503312936585	22.741	0.04825	22.728	22.704	22.752	-0.01354	201	37	1.4997677	0.021289468	1.4982482	304.53586	0	4.322937						54	3	2	NaN	NaN	NaN	0.66822	1	8096	8096		1.9246	0	1	3736.9	+		16615	10721	9653	9856	13141	13141					0.004741039546047432
MALVQDKST	9	Unmodified						0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.508108	991.500831	2.434	0.0024158	-6.4475	-0.0063992	-4.0135	-0.0039834	992.5005808308993	22.718	0.048277	22.718	22.718	22.766	0	201	43	1.4997677	0.024840355	1.4997677	304.53586		5.043976	-0.0049913	-0.001433	0.00075972	NaN	1.9246	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2883.5	+		16616	10721	9653	9856							0.004741039546047432
MALVQDKST	9	Unmodified						0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.508108	991.500831	2.2254	0.0022087	-4.4353	-0.0044021	-2.2099	-0.0021934	992.503312936585	22.741	0.04825	22.728	22.704	22.752	-0.01354	201	37	1.4997677	0.021289468	1.4982482	304.53586		4.322937	0.0049913	0.00056408	-0.00075972	NaN	1.9246	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3736.9	+		16617	10721	9653	9856							0.004741039546047432
MALVSALLL	9	Unmodified	_MALVSALLL_					0	0	0		ENSG00000237330|ENST00000453464|RNF223	ENSG00000237330|ENST00000453464|RNF223	ENSG00000237330|ENST00000453464|RNF223	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.5692515824002	1	930.569252	929.561975	0.62843	0.0005848	0.32934	0.00030648	0.95778	0.00089128	930.5699720058072	35.673	0.12056	35.674	35.626	35.746	0.00053024	264	67	1.4624695	0.039117813	1.46095	297.2334	0	7.950348						205	6	3	NaN	NaN	NaN	0.062836	1	6469	6469		41.46	5.4237	1	29525			16618	6054	9654	9857	13142	13142					0.09437660724688612
MAMLHIGSNP	10	Unmodified	_MAMLHIGSNP_					0	0	0		ENSG00000112561|ENST00000373033|TFEB	ENSG00000112561|ENST00000373033|TFEB	ENSG00000112561|ENST00000373033|TFEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7597119378001	2	535.759712	1069.50487	1.6865	0.00090354	-10.819	-0.0057962	-9.1321	-0.0048926	535.7539754056585	28.435	0.04829	28.426	28.378	28.426	-0.0089798	1266	31	0.85786515	0.018422842	0.8563457	348.0355	0	7.474121						38	3	2	NaN	NaN	NaN	0.5358	1	11249	11249		17.97	0.17071	1	2799.7			16619	1878	9655	9858	13143	13143					-0.027101298233219495
MANTDSQF	8	Unmodified	_MANTDSQF_					0	0	0			REV__ENSG00000127337|ENST00000247843|YEATS4	REV__ENSG00000127337|ENST00000247843|YEATS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.3720083377001	1	913.372008	912.364732	1.475	0.0013473	-11.263	-0.010287	-9.788	-0.00894	913.3619286310659	24.478	0.16879	24.478	24.454	24.623	0	345	70	1.4143922	0.041015625	1.4143922	287.5413	0	8.338348						199	8	2	NaN	NaN	NaN	0.78967	1	6271	6271		10.605	0.85897	1	19810	+		16620	9435	9656	9859	13144	13144					-0.09495590556059597
MANVELSSL	9	Unmodified	_MANVELSSL_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4815587871002	1	963.481559	962.474282	1.9938	0.001921	0.21653	0.00020862	2.2103	0.0021296	963.4823360818204	25.226	0.24129	25.226	25.178	25.419	0	276	103	1.4553556	0.06051278	1.4553556	295.63992	0	12.292511						529	11	4	NaN	NaN	NaN	0.022082	1	7399	7399		69.363	13.405	1	131440			16621	3421	9657	9860	13145	13145					-0.008455849367237533
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(82)ANVELSSL	0	0	1		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.4764734092003	1	979.476473	978.469197	2.3404	0.0022923	-2.059	-0.0020167	0.28141	0.00027563	979.4743774356486	23.224	0.24107	23.224	23.176	23.417	0	285	79	1.4500183	0.04625964	1.4500183	294.48773	0	9.394989						372	11	4	NaN	NaN	NaN	0.013696	1	7837	7837		81.699	34.218	1	64453			16622	3421	9657	9861	13146	13146		383			-0.020898887993325843
MANVELSSL	9	Oxidation (M)	_M(Oxidation (M))ANVELSSL_		M(1)ANVELSSL		M(81)ANVELSSL	0	0	1		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.4764734092003	1	979.476473	978.469197	2.1462	0.0021022	0.33629	0.00032939	2.4825	0.0024316	979.4772193862977	23.248	0.19301	23.234	23.186	23.379	-0.013294	285	97	1.4500183	0.056922913	1.4484988	294.48773	0	11.560608						350	9	4	NaN	NaN	NaN	0.013959	1	7677	7677		80.901	38.583	1	61270			16623	3421	9657	9861	13147	13147		383			-0.020898887993325843
MAPSWYLE	8	Unmodified	_MAPSWYLE_					0	0	0		nc|ENSG00000187243|Q96JG8-4|MAGED4	nc|ENSG00000187243|Q96JG8-4|MAGED4	nc|ENSG00000187243|Q96JG8-4|MAGED4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4495303772001	1	996.44953	995.442254	1.7587	0.0017524	-9.9423	-0.009907	-8.1837	-0.0081546	996.4401940191212	24.502	0.048275	24.502	24.478	24.526	0	264	43	1.4624695	0.024890542	1.4624695	296.94617	0	5.0538635						54	3	2	NaN	NaN	NaN	0.72043	1	8391	8391		17.78	2.3177	1	3600.7			16624	8005	9658	9862	13148	13148					-0.055649526198862986
MAQAYDFAL	9	Unmodified	_MAQAYDFAL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.4709941007998	1	1029.47099	1028.46372	1.904	0.0019601	-0.17837	-0.00018363	1.7256	0.0017764	1029.4707648653916	28.026	0.14478	28.026	27.977	28.122	0	159	73	1.5245869	0.042533755	1.5245869	309.42294	0	8.632446						189	7	3	NaN	NaN	NaN	0.084037	1	9700	9700		38.131	16.296	1	17659			16625	5009	9659	9863	13149	13149					-0.04937567591196057
MAQAYDFAL	9	Unmodified	_MAQAYDFAL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.4709941007998	1	1029.47099	1028.46372	1.0845	0.0011165	0.92047	0.0009476	2.005	0.0020641	1029.4722424085792	28.025	0.12065	28.016	27.992	28.112	-0.0089779	156	52	1.5263584	0.030113697	1.5248389	309.78244	0	6.1117554						168	6	3	NaN	NaN	NaN	0.31471	1	9507	9507		17.97	0.17071	1	16893			16626	5009	9659	9863	13150	13150					-0.04937567591196057
MARTAHIL	8	Unmodified	_MARTAHIL_					0	0	0		ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.75782956335007	2	456.75783	911.501106	0.42344	0.00019341	-0.58793	-0.00026854	-0.16448	-7.5129E-05	456.7577512572816	41.089	0.36067	41.089	40.969	41.329	0	1413	40	0.7673241	0.024083614	0.7673241	311.98813	0	9.792206						239	16	3	NaN	NaN	NaN	0.82332	1	6258	6258		6.0903	0	1	30876			16627	4087	9660	9864	13151	13151					0.04181568465116925
MASALVHIL	9	Unmodified	_MASALVHIL_					0	0	0		ENST00000459906.1_1_9:124522622-124526156:+|nuORF;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	ENST00000459906.1_1_9:124522622-124526156:+|nuORF	ENST00000459906.1_1_9:124522622-124526156:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.7756879655	2	477.775688	953.536823	2.0402	0.00097475	-3.2832	-0.0015687	-1.2431	-0.00059391	477.77337453843876	25.467	0.048279	25.455	25.431	25.479	-0.012011	1314	37	0.8283535	0.022155285	0.8268341	336.58176	0	9.002289						56	3	2	NaN	NaN	NaN	0.53206	1	7029	7029		8.2903	3.3806	1	5731.8			16628	3050	9661	9865	13152	13152					0.05819605922113169
MASALVHIL	9	Unmodified						0	0	0		ENST00000459906.1_1_9:124522622-124526156:+|nuORF;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	ENST00000459906.1_1_9:124522622-124526156:+|nuORF	ENST00000459906.1_1_9:124522622-124526156:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.775688	953.536823	1.875	0.00089581	-3.0133	-0.0014397	-1.1383	-0.00054387	477.7746196532279	25.419	0.07239	25.419	25.419	25.491	0	1317	37	0.8265074	0.022155285	0.8265074	335.8316		9.002289	-0.017982	0.00010255	-0.00016337	NaN	8.2903	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4508			16629	3050	9661	9865							0.05819605922113169
MASDYDPKL	9	Unmodified	_MASDYDPKL_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2418749379	2	520.241875	1038.4692	2.3125	0.0012031	-0.5573	-0.00028993	1.7552	0.00091312	520.2419785458239	18.266	0.071936	18.252	18.228	18.3	-0.01395	1302	52	0.8357362	0.031361163	0.8342168	339.18655	0	12.728058						75	4	3	NaN	NaN	NaN	0.25548	1	9916	9916		21.771	9.7224	1	6604.3			16630	397	9662	9866	13153	13153					-0.048498887993673634
MASDYDPKL	9	Unmodified						0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.241875	1038.4692	2.1629	0.0011252	0.18844	9.8032E-05	2.3514	0.0012233	520.2424301233436	18.268	0.071875	18.268	18.221	18.292	0	1305	70	0.83389086	0.042420685	0.83389086	338.43762		17.216583	0.0084257	0.00030262	-0.00016297	NaN	21.771	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8822.6			16631	397	9662	9866							-0.048498887993673634
MASIVLDEL	9	Unmodified	_MASIVLDEL_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5176099423999	1	990.51761	989.510333	2.0639	0.0020443	0.33268	0.00032952	2.3966	0.0023738	990.5188747569642	30.318	0.19305	30.318	30.222	30.415	0	222	64	1.4873441	0.037282348	1.4873441	302.0215	0	7.570587						173	9	3	NaN	NaN	NaN	0.043119	1	8193	8193		49.833	5.5305	1	21198			16632	423	9663	9867	13154	13154					0.015158722400997249
MASIVLDEL	9	Unmodified	_MASIVLDEL_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5176099423999	1	990.51761	989.510333	1.2593	0.0012473	-0.65828	-0.00065204	0.60098	0.00059528	990.5174954803231	30.293	0.1206	30.287	30.263	30.383	-0.0064106	222	61	1.4873441	0.035505056	1.4858247	302.0215	0	7.2096863						185	6	3	NaN	NaN	NaN	0.13602	1	8027	8027		30.61	8.7751	1	19380			16633	423	9663	9867	13155	13155					0.015158722400997249
MASMDGGS	8	Unmodified	_MASMDGGS_					0	0	0		ENST00000530346.5_1_6:2246158-2249115:+|nuORF	ENST00000530346.5_1_6:2246158-2249115:+|nuORF	ENST00000530346.5_1_6:2246158-2249115:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.2698514521002	1	755.269851	754.262575	1.2856	0.000971	4.5342	0.0034246	5.8199	0.0043956	755.2735662484334	28.194	0.21718	28.185	28.137	28.354	-0.0089779	564	64	1.2837118	0.037745595	1.2821923	261.7859	0	7.697418						245	10	3	NaN	NaN	NaN	0.84692	1	4052	4052		1.4396	0	1	25274			16634	7449	9664	9868	13156	13156					-0.12438579899321667
MASRDVFLL	9	Unmodified	_MASRDVFLL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2838771383501	2	526.283877	1050.5532	2.0666	0.0010876	-0.81206	-0.00042738	1.2545	0.00066024	526.2835669754656	25.901	0.21718	25.901	25.853	26.07	0	1224	106	0.883646	0.0644626	0.883646	358.57693	0	26.158417						556	10	4	NaN	NaN	NaN	0.19455	1	10654	10654		25.681	6.5631	1	79916			16635	3391	9665	9869	13157	13157					0.02994687088221326
MASRDVFLL	9	Unmodified						0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.283877	1050.5532	2.0469	0.0010772	-0.83865	-0.00044137	1.2082	0.00063588	526.2834301832995	25.925	0.43444	25.914	25.769	26.203	-0.0116	1221	109	0.885486	0.06630796	0.88396657	359.3236		26.907257	0.0061615	-1.3087E-05	0.00016028	NaN	25.681	734	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92940			16636	3391	9665	9869							0.02994687088221326
MASRVAVAL	9	Unmodified	_MASRVAVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.26548741995003	2	459.265487	916.516422	1.5452	0.00070966	-2.8275	-0.0012986	-1.2823	-0.0005889	459.2644302378519	19.466	0.072201	19.452	19.428	19.5	-0.014141	1383	31	0.7858409	0.018504798	0.7843215	319.491	0	7.5233154						60	4	2	NaN	NaN	NaN	0.5168	1	6226	6226		8.9191	1.3315	1	4548.7			16637	2581	9666	9870	13158	13158					0.05482435262297258
MASRVAVAL	9	Unmodified						0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	459.265487	916.516422	1.1541	0.00053005	-2.7145	-0.0012467	-1.5604	-0.00071662	459.2636111597425	19.444	0.072025	19.444	19.396	19.468	0	1383	37	0.7858409	0.02220571	0.7858409	319.491		9.027954	-0.004054	7.1498E-05	0.00075972	NaN	8.9191	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5240.4			16638	2581	9666	9870							0.05482435262297258
MASSVIVSL	9	Unmodified	_MASSVIVSL_					0	0	0		ENST00000307750.4_1_9:37442460-37442490:-|nuORF	ENST00000307750.4_1_9:37442460-37442490:-|nuORF	ENST00000307750.4_1_9:37442460-37442490:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4964805698002	1	906.496481	905.489204	1.6483	0.0014942	-0.60183	-0.00054556	1.0465	0.00094865	906.4957061992768	27.277	0.12063	27.267	27.242	27.363	-0.010126	327	79	1.425088	0.0463531	1.4235686	289.74835	0	9.4244995						190	6	3	NaN	NaN	NaN	0.032764	1	6055	6055		55.494	5.6607	1	26526			16639	6433	9667	9871	13159	13159					0.03267906931262132
MASSVIVSL	9	Unmodified						0	0	0		ENST00000307750.4_1_9:37442460-37442490:-|nuORF	ENST00000307750.4_1_9:37442460-37442490:-|nuORF	ENST00000307750.4_1_9:37442460-37442490:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	906.496481	905.489204	1.6537	0.0014991	0.022752	2.0624E-05	1.6764	0.0015197	906.4966748189884	27.253	0.16895	27.253	27.229	27.398	0	330	64	1.4233059	0.037429094	1.4233059	289.386		7.610077	-0.0066285	0.00019278	-0.00013136	NaN	55.494	208	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27783			16640	6433	9667	9871							0.03267906931262132
MATRDVVL	8	Unmodified	_MATRDVVL_					0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.74967018025	2	452.74967	903.484787	1.9503	0.00088299	-1.0975	-0.0004969	0.85278	0.00038609	452.7493595858907	18.506	0.095926	18.492	18.468	18.564	-0.01395	1338	31	0.81357855	0.018476725	0.8120591	330.8384	0	7.513489						67	5	2	NaN	NaN	NaN	0.79707	1	6025	6025		9.6116	3.5213	1	6118			16641	735	9668	9872	13160	13160					0.02918442508348562
MATRDVVL	8	Unmodified						0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	452.74967	903.484787	1.7487	0.00079171	-1.8398	-0.00083296	-0.091129	-4.1259E-05	452.74890147191917	18.484	0.11989	18.484	18.46	18.58	0	1335	31	0.8154261	0.018476725	0.8154261	331.58972		7.513489	-0.0036715	-0.00028486	0.0016835	NaN	9.6116	69	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5880.5			16642	735	9668	9872							0.02918442508348562
MATVVLTVL	9	Unmodified	_MATVVLTVL_					0	0	0		ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272736-33281818:-|nuORF	ENST00000480730.5_1_6:33272736-33281818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5641662045001	1	946.564166	945.55689	0.90015	0.00085205	-1.1192	-0.0010594	-0.21901	-0.0002073	946.562791242539	32.031	0.072376	32.027	32.003	32.075	-0.0037613	252	70	1.4695803	0.040867686	1.4680609	298.60486	0	8.303925						112	4	3	NaN	NaN	NaN	0.39244	1	6842	6842		14.042	1.0388	1	9914.1			16643	6038	9669	9873	13161	13161					0.08193356862068413
MAVAGGGK	8	Unmodified	_MAVAGGGK_					0	0	0		ENST00000361298.8_2_X:102631318-102631966:+|nuORF	ENST00000361298.8_2_X:102631318-102631966:+|nuORF	ENST00000361298.8_2_X:102631318-102631966:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.38794	0.00026782	4.2162	0.0029107	4.6041	0.0031785	690.3630290016903	43.319	0.1916	43.33	43.258	43.45	0.01099	738	46	1.179155	0.027125955	1.1776356	240.86769	0	5.5410767						171	9	2	NaN	NaN	NaN	0.84887	1	2933	2933		0.32989	0	1	20318			16644	6604	9670	9874	13162	13162					-0.004057427887460108
MAVCEIQVH	9	Carbamidomethyl (C)	_MAVC(Carbamidomethyl (C))EIQVH_	MAVC(1)EIQVH		MAVC(61)EIQVH		0	1	0		PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant;nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8	PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant	PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7571692488501	2	543.757169	1085.49979	2.3677	0.0012875	-2.0655	-0.0011231	0.30223	0.00016434	543.7564483917365	18.46	0.19188	18.46	18.436	18.628	0	1263	67	0.85970795	0.040525913	0.85970795	348.7177	0	16.438232						394	9	4	NaN	NaN	NaN	0.028349	1	12192	12192		61.271	16.969	1	110900			16645	1587	9671	9875	13163	13163	2				-0.03954433685953518
MAVCEIQVH	9	Carbamidomethyl (C)	_MAVC(Carbamidomethyl (C))EIQVH_	MAVC(1)EIQVH		MAVC(59)EIQVH		0	1	0		PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant;nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8	PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant	PLEKHA8|p.P206Tfs*4|1|0.34|ENSG00000106086|chr7:30050449-30050450|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7571692488501	2	543.757169	1085.49979	2.1317	0.0011591	-2.1707	-0.0011803	-0.03898	-2.1195E-05	543.7563736335551	18.482	0.19195	18.468	18.444	18.636	-0.01395	1263	79	0.85970795	0.047883928	0.8581885	348.7177	0	19.422821						357	9	4	NaN	NaN	NaN	0.030391	1	11883	11883		58.599	16.815	1	112740			16646	1587	9671	9875	13164	13164	2				-0.03954433685953518
MAVELPDSF	9	Unmodified	_MAVELPDSF_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4706597498	1	1008.47066	1007.46338	1.5203	0.0015332	1.4466	0.0014589	2.9669	0.0029921	1008.471564883003	29.015	0.16894	29.015	28.967	29.136	0	222	91	1.4873441	0.05329156	1.4873441	301.94757	0	10.818787						208	8	2	NaN	NaN	NaN	0.030669	1	8872	8872		58.235	30.447	1	24047			16647	4867	9672	9876	13165	13165					-0.04004987311031982
MAVELPDSF	9	Unmodified	_MAVELPDSF_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4706597498	1	1008.47066	1007.46338	1.3081	0.0013192	1.7684	0.0017834	3.0765	0.0031026	1008.4714320386514	29.014	0.12066	29.007	28.958	29.079	-0.0077209	219	88	1.4891195	0.05151248	1.4876001	302.30798	0	10.457611						273	6	3	NaN	NaN	NaN	0.028349	1	8701	8701		61.271	23.969	1	25735			16648	4867	9672	9876	13166	13166					-0.04004987311031982
MAVGGTAVITR	11	Unmodified	_MAVGGTAVITR_					0	0	0		ENST00000422154.6_1_X:102940158-102941669:-|nuORF	ENST00000422154.6_1_X:102940158-102941669:-|nuORF	ENST00000422154.6_1_X:102940158-102941669:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.3000585188	2	538.300059	1074.58556	2.1426	0.0011534	-3.5153	-0.0018923	-1.3727	-0.0007389	538.2982861157475	17.885	0.071899	17.885	17.861	17.933	0	1263	46	0.85970795	0.027638733	0.85970795	348.76212	0	11.212341						107	4	3	NaN	NaN	NaN	0.36359	1	11759	11759		23.353	13.741	1	11841			16649	6922	9673	9877	13167	13167					0.051254744912057504
MAVGGTAVITR	11	Unmodified	_MAVGGTAVITR_					0	0	0		ENST00000422154.6_1_X:102940158-102941669:-|nuORF	ENST00000422154.6_1_X:102940158-102941669:-|nuORF	ENST00000422154.6_1_X:102940158-102941669:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.3000585188	2	538.300059	1074.58556	1.8	0.00096893	-2.1371	-0.0011504	-0.3371	-0.00018146	538.2988038430442	17.906	0.11996	17.892	17.868	17.988	-0.013786	1263	40	0.85970795	0.023953617	0.8581885	348.76212	0	9.717346						97	6	3	NaN	NaN	NaN	0.52491	1	11453	11453		17.582	9.3043	1	10520			16650	6922	9673	9877	13168	13168					0.051254744912057504
MAVIDGNVM	9	Unmodified	_MAVIDGNVM_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.4481501687002	1	949.44815	948.440874	1.9209	0.0018238	0.31376	0.0002979	2.2347	0.0021217	949.4485512971168	24.96	0.096546	24.96	24.936	25.033	0	315	142	1.4322147	0.08369887	1.4322147	290.99982	0	17.006073						422	5	5	NaN	NaN	NaN	0.010404	1	7043	7043		91.563	54.977	1	111570			16651	2752	9674	9878	13169	13169					-0.03540909980279139
MAVIDGNVM	9	Oxidation (M)	_MAVIDGNVM(Oxidation (M))_		MAVIDGNVM(1)		M(-130)AVIDGNVM(130)	0	0	1		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4430647908002	1	965.443065	964.435788	1.6367	0.0015801	-1.1579	-0.0011179	0.47881	0.00046227	965.4429073924587	21.224	0.19265	21.224	21.175	21.368	0	309	97	1.435777	0.05701983	1.435777	291.65436	0	11.582642						373	9	4	NaN	NaN	NaN	3.9799E-05	1	7457	7457		126.58	76.618	2	79535			16652	2752	9674	9879	13170	13170		320;321			-0.0478521384288797
MAVIDGNVM	9	Oxidation (M)	_M(Oxidation (M))AVIDGNVM_		M(1)AVIDGNVM		M(53)AVIDGNVM(-53)	0	0	1		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4430647908002	1	965.443065	964.435788	1.8752	0.0018104	-0.75961	-0.00073336	1.1156	0.001077	965.443817811501	22.067	0.19287	22.067	21.97	22.163	0	303	82	1.4393384	0.048087478	1.4393384	292.3778	0	9.768158						290	9	3	NaN	NaN	NaN	0.03618	1	7458	7458		52.78	26.665	2	46811			16653	2752	9674	9879	13171	13171		320;321			-0.0478521384288797
MAVIDGNVM	9	Oxidation (M)	_MAVIDGNVM(Oxidation (M))_		MAVIDGNVM(1)		M(-110)AVIDGNVM(110)	0	0	1		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4430647908002	1	965.443065	964.435788	1.3131	0.0012677	-0.50185	-0.00048451	0.81125	0.00078321	965.4431221216573	21.224	0.19252	21.21	21.162	21.354	-0.014004	306	82	1.4375578	0.048092484	1.4360384	292.01608	0	9.769196						381	9	4	NaN	NaN	NaN	0.00065562	1	7306	7306		115.07	67.934	2	82021			16654	2752	9674	9879	13172	13172		320;321			-0.0478521384288797
MAVIDGNVM	9	Oxidation (M)	_M(Oxidation (M))AVIDGNVM_		M(1)AVIDGNVM		M(65)AVIDGNVM(-65)	0	0	1		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4430647908002	1	965.443065	964.435788	1.1933	0.0011521	0.62376	0.00060221	1.8171	0.0017543	965.4440477226995	21.994	0.16858	21.98	21.956	22.125	-0.013897	303	103	1.4393384	0.060570717	1.437819	292.37778	0	12.303925						258	8	3	NaN	NaN	NaN	0.025843	1	7307	7307		64.55	30.111	2	41904			16655	2752	9674	9879	13173	13173		320;321			-0.0478521384288797
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(130)AVIDGNVM(130)	0	0	2		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4379794129002	1	981.437979	980.430703	2.2878	0.0022453	-0.51762	-0.00050801	1.7702	0.0017373	981.4380688453379	17.933	0.07196	17.933	17.909	17.981	0	306	61	1.4375578	0.035618424	1.4375578	291.94897	0	7.233612						131	4	3	NaN	NaN	NaN	3.9799E-05	1	7891	7891		126.58	62.621	1	12271			16656	2752	9674	9880	13174	13174		320;321			-0.06029517705519538
MAVIDGNVM	9	2 Oxidation (M)	_M(Oxidation (M))AVIDGNVM(Oxidation (M))_		M(1)AVIDGNVM(1)		M(100)AVIDGNVM(100)	0	0	2		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.4379794129002	1	981.437979	980.430703	2.2726	0.0022304	-1.5259	-0.0014976	0.74666	0.0007328	981.4367096481031	17.954	0.071974	17.94	17.892	17.964	-0.013786	303	58	1.4393384	0.03383565	1.437819	292.3106	0	6.871582						137	4	3	NaN	NaN	NaN	0.0052656	1	7723	7723		102.05	38.316	1	14330			16657	2752	9674	9880	13175	13175		320;321			-0.06029517705519538
MAVLSEAEL	9	Unmodified	_MAVLSEAEL_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF;nc|ENSG00000100767|O95428-6|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.486309814	1	962.48631	961.479033	1.7578	0.0016918	-1.779	-0.0017122	-0.021196	-2.0401E-05	962.4854563500822	26.432	0.048281	26.432	26.408	26.456	0	267	64	1.4606913	0.03735757	1.4606913	296.72815	0	7.5888977						128	3	3	NaN	NaN	NaN	0.032417	1	7368	7368		55.947	19.361	1	10488			16658	1274	9675	9881	13176	13176					-0.003247007939762625
MAVWEAEQL	9	Unmodified	_MAVWEAEQL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5081078885999	1	1076.50811	1075.50083	1.3042	0.001404	1.2101	0.0013027	2.5143	0.0027067	1076.510630966617	27.205	0.072399	27.205	27.157	27.229	0	141	79	1.5352125	0.04604411	1.5352125	311.39908	0	9.339478						190	4	4	NaN	NaN	NaN	0.00019594	1	11778	11778		117.07	61.474	1	23527			16659	2651	9676	9882	13177	13177					-0.033898960454280314
MAVWEAEQL	9	Unmodified	_MAVWEAEQL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7576921776	2	538.757692	1075.50083	0.94522	0.00050925	-0.63058	-0.00033973	0.31464	0.00016951	538.7575197705535	27.204	0.16893	27.194	27.17	27.339	-0.010126	1218	61	0.8873258	0.03680587	0.8858064	359.9621	0	14.931061						208	8	4	NaN	NaN	NaN	0.3389	1	11466	11466		16.417	2.3751	1	30095			16660	2651	9676	9882	13178	13178					-0.033898960454280314
MAVWEAEQL	9	Unmodified	_MAVWEAEQL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5081078885999	1	1076.50811	1075.50083	1.3909	0.0014973	0.58093	0.00062538	1.9718	0.0021227	1076.5073495946763	27.204	0.072405	27.194	27.17	27.242	-0.010126	141	73	1.5352125	0.042502284	1.5336931	311.39908	0	8.621063						145	4	2	NaN	NaN	NaN	0.0052656	1	11467	11467		102.05	59.729	1	22008			16661	2651	9676	9882	13179	13179					-0.033898960454280314
MAVWEAEQL	9	Oxidation (M)	_M(Oxidation (M))AVWEAEQL_		M(1)AVWEAEQL		M(55)AVWEAEQL	0	0	1		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5030225106998	1	1092.50302	1091.49575	1.9014	0.0020773	-0.42242	-0.0004615	1.479	0.0016158	1092.503670029826	25.081	0.048243	25.069	25.045	25.093	-0.012011	135	58	1.5387528	0.033627987	1.5372335	312.05923	0	6.819763						67	3	2	NaN	NaN	NaN	0.032826	1	12133	12133		55.413	24.803	1	5276.8			16662	2651	9676	9883	13180	13180		301			-0.04634199908036862
MAYGVEPAL	9	Unmodified	_MAYGVEPAL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4651804414001	1	950.46518	949.457904	1.7442	0.0016578	0.37734	0.00035865	2.1216	0.0020165	950.4658983712644	24.912	0.04825	24.912	24.864	24.912	0	282	121	1.4517976	0.07122922	1.4517976	294.97418	0	14.4722595						154	3	2	NaN	NaN	NaN	0.014943	1	7067	7067		78.398	34.151	1	47911			16663	850	9677	9884	13181	13181					-0.01884666102830579
MAYGVEPAL	9	Unmodified	_MAYGVEPAL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4651804414001	1	950.46518	949.457904	1.4533	0.0013813	0.64935	0.00061718	2.1027	0.0019985	950.4658537512042	24.912	0.048258	24.9	24.851	24.9	-0.012392	279	94	1.4535767	0.055176258	1.4520572	295.33566	0	11.210632						148	3	2	NaN	NaN	NaN	0.011118	1	6938	6938		89.521	36.197	1	43195			16664	850	9677	9884	13182	13182					-0.01884666102830579
MAYGVEPAL	9	Oxidation (M)	_M(Oxidation (M))AYGVEPAL_		M(1)AYGVEPAL		M(62)AYGVEPAL	0	0	1		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4600950635001	1	966.460095	965.452819	2.2457	0.0021704	0.45351	0.0004383	2.6992	0.0026087	966.46069398889	23.055	0.26495	23.055	22.959	23.224	0	276	121	1.4553556	0.0712142	1.4553556	295.62704	0	14.465759						588	12	4	NaN	NaN	NaN	0.02781	1	7493	7493		61.977	23.059	1	75875			16665	850	9677	9885	13183	13183		90			-0.031289699654507785
MAYLEADAL	9	Unmodified	_MAYLEADAL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4706597497999	1	996.47066	995.463383	1.8522	0.0018457	-1.563	-0.0015575	0.28918	0.00028816	996.4691896310123	26.674	0.12068	26.674	26.625	26.746	0	225	85	1.4855686	0.049738765	1.4855686	301.6362	0	10.099182						206	6	3	NaN	NaN	NaN	0.29681	1	8400	8400		19.118	6.5304	1	18005			16666	5197	9678	9886	13184	13184					-0.03452987311038669
MAYLEADAL	9	Unmodified	_MAYLEADAL_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4706597497999	1	996.47066	995.463383	1.3904	0.0013855	-2.6563	-0.0026469	-1.2659	-0.0012614	996.4687265096474	26.697	0.072378	26.687	26.663	26.735	-0.010645	222	79	1.4873441	0.046181083	1.4858247	301.9967	0	9.376801						131	4	2	NaN	NaN	NaN	0.12945	1	8233	8233		31.561	16.386	1	14205			16667	5197	9678	9886	13185	13185					-0.03452987311038669
MCAWMNEI	8	Unmodified	_MCAWMNEI_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.20064128739995	2	499.200641	996.38673	1.6884	0.00084284	0.25987	0.00012973	1.9483	0.00097257	499.20070094895664	23.827	0.072218	23.827	23.803	23.875	0	1338	34	0.81357855	0.020325482	0.81357855	330.3762	0	8.253723						67	4	2	NaN	NaN	NaN	0.76633	1	8432	8432		13.737	2.1886	1	6245.1	+		16668	10958	9679	9887	13186	13186					-0.11160825403521812
MCAWMNEI	8	Unmodified						0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.200641	996.38673	1.6884	0.00084284	0.25987	0.00012973	1.9483	0.00097257	499.20070094895664	23.827	0.072218	23.827	23.803	23.875	0	1338	34	0.81357855	0.020325482	0.81357855	330.3762		8.253723	0.0066372	0.0015442	0.00075972	NaN	13.737	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6245.1	+		16669	10958	9679	9887							-0.11160825403521812
MCCLSESE	8	Unmodified	_MCCLSESE_					0	0	0		ENST00000283195.10_1_2:109381488-109381560:+|nuORF	ENST00000283195.10_1_2:109381488-109381560:+|nuORF	ENST00000283195.10_1_2:109381488-109381560:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.3100017073	1	901.310002	900.302725	1.6376	0.001476	-6.4555	-0.0058184	-4.8179	-0.0043424	901.3043451090639	11.886	0.40789	11.878	11.854	12.262	-0.0081863	1023	103	1.0064877	0.06212622	1.0049683	204.65636	0	12.632568						485	18	2	NaN	NaN	NaN	0.81807	1	5965	5965		6.794	0.70367	1	82068			16670	6368	9680	9888	13187	13187					-0.15141401291077727
MCPGVGAG	8	Unmodified	_MCPGVGAG_					0	0	0			REV__nc|ENSG00000149150|O75387-2|SLC43A1	REV__nc|ENSG00000149150|O75387-2|SLC43A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.2901929637001	1	691.290193	690.282916	1.9681	0.0013605	7.9043	0.0054642	9.8724	0.0068247	691.2957241767385	17.357	0.33556	17.357	17.285	17.621	0	693	52	1.2062578	0.030693412	1.2062578	246.39754	0	6.269638						271	15	2	NaN	NaN	NaN	0.84651	1	3040	3040		1.6704	0	1	25763	+		16671	13138	9681	9889	13188	13188					-0.07461364448863606
MCPGVGAG	8	Unmodified						0	0	0			REV__nc|ENSG00000149150|O75387-2|SLC43A1	REV__nc|ENSG00000149150|O75387-2|SLC43A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	691.290193	690.282916	1.9681	0.0013605	7.9043	0.0054642	9.8724	0.0068247	691.2957241767385	17.357	0.33556	17.357	17.285	17.621	0	693	52	1.2062578	0.030693412	1.2062578	246.39754		6.269638	-0.015551	-0.00015898	0.00075972	NaN	1.6704	271	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25763	+		16672	13138	9681	9889							-0.07461364448863606
MDATSSRVW	9	Unmodified	_MDATSSRVW_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4829557706	1	1052.48296	1051.47568	2.2705	0.0023897	0.56973	0.00059963	2.8402	0.0029893	1052.485511311379	27.929	0.072403	27.929	27.905	27.977	0	234	49	1.4802408	0.028413057	1.4802408	300.33566	0	5.7648926						84	4	2	NaN	NaN	NaN	0.31737	1	10677	10677		17.799	0	1	6005.1			16673	3195	9682	9890	13189	13189					-0.04799950847973378
MDCARLFVL	9	Unmodified	_MDCARLFVL_					0	0	0			REV__tr|U7SUY9|U7SUY9_FUSNUSulfitereductase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01057PE=4SV=1	REV__tr|U7SUY9|U7SUY9_FUSNUSulfitereductase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01057PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2724551723	2	534.272455	1066.53036	1.8897	0.0010096	-10.192	-0.0054453	-8.3022	-0.0044356	534.267241987002	30.366	0.19303	30.366	30.198	30.391	0	1269	58	0.8560222	0.035009086	0.8560222	347.3001	0	14.203674						167	9	2	NaN	NaN	NaN	0.12328	1	11398	11398		32.453	5.7212	1	26238	+		16674	13526	9683	9891	13190	13190					-0.00024655300921949674
MDDNGNSE	8	Unmodified	_MDDNGNSE_					0	0	0		nc|ENSG00000138660|Q63HQ0-2|AP1AR;ENSG00000138660|ENST00000274000|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.1507142069	2	441.150714	880.286875	0.62258	0.00027465	-2.7563	-0.0012159	-2.1337	-0.00094128	441.14929022280614	31.331	0.14475	31.326	31.277	31.422	-0.0050716	1425	40	0.7599118	0.024094045	0.75839233	309.13693	0	9.801605						123	7	2	NaN	NaN	NaN	0.84512	1	5680	5680		2.4615	0	1	14091			16675	3175	9684	9892	13191	13191					-0.1580564821210828
MDFCDGGDM	9	Unmodified	_MDFCDGGDM_					0	0	0		ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.65372088455	2	495.653721	989.292889	2.4049	0.001192	-1.6892	-0.00083726	0.71568	0.00035473	495.6520506834712	18.436	0.071928	18.436	18.436	18.508	0	1401	37	0.77473325	0.022222579	0.77473325	314.6327	0	9.024963						51	4	2	NaN	NaN	NaN	0.62619	1	8175	8175		4.4131	0	1	3722.3			16676	4976	9685	9893	13192	13192					-0.20218589296439404
MDGRIYAILW	10	Unmodified	_MDGRIYAILW_					0	0	0			REV__KCNJ6|p.S175Lfs*17|1|0.13|ENSG00000157542|chr21:37714634-37714634|A/-|frameshift_variant	REV__KCNJ6|p.S175Lfs*17|1|0.13|ENSG00000157542|chr21:37714634-37714634|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3235336151	2	619.323534	1236.63251	0.68744	0.00042575	2.2165	0.0013728	2.904	0.0017985	619.3254747955092	35.89	0.12046	35.891	35.843	35.964	0.0011024	1227	43	0.88180584	0.025761366	0.8802864	357.13272	0	10.43338						99	6	2	NaN	NaN	NaN	0.62764	1	16720	16720		13.003	1.4544	1	9273.4	+		16677	10149	9686	9894	13193	13193					0.023663340423354384
MDISDFYKK	9	Unmodified	_MDISDFYKK_					0	0	0			REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.77862458495	2	573.778625	1145.5427	1.5055	0.00086383	-1.9451	-0.0011161	-0.43963	-0.00025225	573.7773861619931	29.594	0.19308	29.594	29.546	29.739	0	1188	55	0.90571284	0.033082366	0.90571284	367.13696	0	13.410187						112	9	2	NaN	NaN	NaN	0.63698	1	14637	14637		3.9685	0	1	19225	+		16678	13507	9687	9895	13194	13194					-0.024253403568991416
MDISDFYKK	9	Unmodified						0	0	0			REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.778625	1145.5427	1.5055	0.00086383	-1.9451	-0.0011161	-0.43963	-0.00025225	573.7773861619931	29.594	0.19308	29.594	29.546	29.739	0	1188	55	0.90571284	0.033082366	0.90571284	367.13696		13.410187	0.0039562	0.00054678	0.0016786	NaN	3.9685	112	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19225	+		16679	13507	9687	9895							-0.024253403568991416
MDISDFYKK	9	Unmodified						0	0	0			REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	REV__tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	573.778625	1145.5427	0.85507	0.00049062	-2.7394	-0.0015718	-1.8843	-0.0010812	573.7773555211039	29.593	0.193	29.586	29.514	29.707	-0.0070667	1191	61	0.90387505	0.036758184	0.9023556	366.39197		14.900177	-0.0039562	-0.00036463	-0.0016786	NaN	3.9685	233	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28612	+		16680	13507	9687	9895							-0.024253403568991416
MDKGTEPEL	9	Unmodified	_MDKGTEPEL_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.4713880313001	1	1019.47139	1018.46411	2.3649	0.002411	-0.94822	-0.00096668	1.4167	0.0014443	1019.4709855097997	28.87	0.096542	28.87	28.846	28.943	0	246	43	1.4731345	0.02487731	1.4731345	299.01926	0	5.0496216						88	5	3	NaN	NaN	NaN	0.51576	1	9304	9304		8.962	0	1	6426.4	+		16681	10485	9688	9896	13195	13195					-0.04438192661973517
MDPFHHHHFD	10	Unmodified	_MDPFHHHHFD_					0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.5173346301	3	440.517335	1318.53017	1.5728	0.00069283	-5.9411	-0.0026171	-4.3683	-0.0019243	440.5147675117437	15.1	0.072051	15.088	15.04	15.112	-0.011738	1473	28	0.7302302	0.016711295	0.7287108	443.30872	0	10.145111						48	4	2	NaN	NaN	NaN	0.77928	1	18234	18234		0.21374	0.076832	1	3622.7	+		16682	9041	9689	9897	13196	13196					-0.11634938976567355
MDPFHHHHFD	10	Unmodified						0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	440.517335	1318.53017	1.0317	0.00045447	-4.9124	-0.002164	-3.8807	-0.0017095	440.5151835623133	15.126	0.14415	15.126	15.029	15.174	0	1476	31	0.72837335	0.018569112	0.72837335	442.1815		11.272949	0.01858	0.00045356	-0.00016869	NaN	0.21374	78	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7909	+		16683	9041	9689	9897							-0.11634938976567355
MDPFHHHHFD	10	Unmodified						0	0	0			REV__nc|ENSG00000108582|O75976-2|CPD	REV__nc|ENSG00000108582|O75976-2|CPD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	440.517335	1318.53017	1.5728	0.00069283	-5.9411	-0.0026171	-4.3683	-0.0019243	440.5147675117437	15.1	0.072051	15.088	15.04	15.112	-0.011738	1473	28	0.7302302	0.016711295	0.7287108	443.30872		10.145111	-0.01858	-0.00090586	0.00016869	NaN	0.21374	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3622.7	+		16684	9041	9689	9897							-0.11634938976567355
MDPYEDEL	8	Unmodified	_MDPYEDEL_					0	0	0			REV__ENSG00000135900|ENST00000258383|MRPL44	REV__ENSG00000135900|ENST00000258383|MRPL44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2024154263999	2	506.202415	1010.39028	1.1384	0.00057626	-7.3663	-0.0037288	-6.2279	-0.0031526	506.69982741284235	22.091	0.1929	22.077	22.029	22.222	-0.013731	1356	91	0.8024889	0.055424273	0.8009695	325.81143	0	22.502289						591	9	4	NaN	NaN	NaN	0.72043	1	8806	8806		17.78	2.3177	1	91140	+		16685	9636	9690	9898	13197	13197					-0.11450160824313116
MDQKDEELESE	11	Unmodified	_MDQKDEELESE_					0	0	0			REV__nc|ENSG00000178965|Q5RHP9-3|ERICH3	REV__nc|ENSG00000178965|Q5RHP9-3|ERICH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.77974679695	2	676.779747	1351.54494	1.0676	0.0007225	-0.96007	-0.00064976	0.10748	7.2741E-05	676.7802135744962	26.964	0.072361	26.964	26.94	27.012	0	1128	46	0.9424274	0.027501822	0.9424274	381.32608	0	11.127808						102	4	4	NaN	NaN	NaN	0.75376	1	19558	19558		3.9281	0	1	7422.1	+		16686	10797	9691	9899	13198	13198					-0.11677001200405357
MDQKDEELESE	11	Unmodified						0	0	0			REV__nc|ENSG00000178965|Q5RHP9-3|ERICH3	REV__nc|ENSG00000178965|Q5RHP9-3|ERICH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	676.779747	1351.54494	1.0676	0.0007225	-0.96007	-0.00064976	0.10748	7.2741E-05	676.7802135744962	26.964	0.072361	26.964	26.94	27.012	0	1128	46	0.9424274	0.027501822	0.9424274	381.32608		11.127808	-0.0066031	0.00032953	-0.00015711	NaN	3.9281	102	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7422.1	+		16687	10797	9691	9899							-0.11677001200405357
MDQWLQFF	8	Unmodified	_MDQWLQFF_					0	0	0			REV__nc|ENSG00000129219|O14939-4|PLD2	REV__nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7549525234001	2	557.754953	1113.49535	1.8668	0.0010412	-9.5713	-0.0053384	-7.7045	-0.0042972	557.7496537477201	23.296	0.096457	23.296	23.272	23.369	0	1248	82	0.8689189	0.049701393	0.8689189	352.34283	0	20.153687						321	5	5	NaN	NaN	NaN	0.81756	1	13407	13407		6.8632	1.6743	1	46255	+		16688	9462	9692	9900	13199	13199					-0.05685574837207241
MDRFPYLAL	9	Unmodified	_MDRFPYLAL_					0	0	0		ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.29170217045	2	563.291702	1124.56885	1.5271	0.00086018	-4.6683	-0.0026296	-3.1413	-0.0017694	563.2907196104624	32.635	0.31371	32.635	32.466	32.78	0	1203	91	0.8965218	0.0552029	0.8965218	363.4919	0	22.381836						305	14	2	NaN	NaN	NaN	0.2961	1	13869	13869		19.164	3.9882	1	32858			16689	4218	9693	9901	13200	13200					0.01154973605230225
MDRFPYLAL	9	Unmodified						0	0	0		ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.291702	1124.56885	0.93334	0.00052574	-8.58	-0.0048331	-7.6467	-0.0043073	563.2889508863259	32.658	0.096539	32.655	32.607	32.703	-0.0031052	1200	97	0.89836043	0.05888945	0.896841	364.2374		23.876556	0.0099812	-0.0018474	0.00015958	NaN	19.164	287	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28468			16690	4218	9693	9901							0.01154973605230225
MDRIEMNL	8	Unmodified	_MDRIEMNL_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.4805129296	1	1021.48051	1020.47324	1.4288	0.0014595	5.8385	0.0059639	7.2673	0.0074234	1021.4893590172538	27.615	0.07239	27.605	27.581	27.653	-0.009552	210	109	1.4944444	0.06391597	1.4929249	303.33676	0	12.973419						164	4	3	NaN	NaN	NaN	0.65542	1	9186	9186		21.835	2.6714	1	13044	+		16691	8600	9694	9902	13201	13201					-0.03618122577302074
MDSAIAIARF	10	Unmodified	_MDSAIAIARF_					0	0	0			REV__ENSG00000158825|ENST00000375071|CDA	REV__ENSG00000158825|ENST00000375071|CDA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7867839680499	2	547.786784	1093.55902	1.213	0.00066447	0.88684	0.0004858	2.0998	0.0011503	547.7874632773537	29.353	0.26547	29.353	29.28	29.546	0	1206	73	0.894683	0.044152796	0.894683	362.87088	0	17.907715						336	12	4	NaN	NaN	NaN	0.77421	1	12561	12561		1.9246	0	1	41670	+		16692	10172	9695	9903	13202	13202					0.01597785599847157
MDSLKNLEN	9	Unmodified	_MDSLKNLEN_					0	0	0		tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.5088361700998	1	1063.50884	1062.50156	1.6575	0.0017628	3.7057	0.0039411	5.3632	0.0057038	1063.513087763536	36.085	0.16891	36.085	36.012	36.181	0	156	67	1.5263584	0.038968682	1.5263584	309.6511	0	7.905548						277	8	4	NaN	NaN	NaN	0.34922	1	11217	11217		15.822	2.7208	1	39664			16693	13973	9696	9904	13203	13203					-0.027191013963602018
MDSTPLLFHS	10	Unmodified	_MDSTPLLFHS_					0	0	0			REV__ENST00000491755.5_1_1:46087308-46087964:-|nuORF	REV__ENST00000491755.5_1_1:46087308-46087964:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2762490715002	2	574.276249	1146.53795	1.2775	0.00073363	-4.8566	-0.0027891	-3.5791	-0.0020554	574.2735481631624	24.019	0.072374	24.006	24.006	24.079	-0.012747	1224	67	0.883646	0.040486515	0.88212657	358.18832	0	16.411285						170	4	3	NaN	NaN	NaN	0.67523	1	14193	14193		9.746	0	1	15264	+		16694	10186	9697	9905	13204	13204					-0.02946224499623895
MDVRRQPQ	8	Unmodified	_MDVRRQPQ_					0	0	0			REV__nc|ENSG00000182934|P08240-2|SRPRA	REV__nc|ENSG00000182934|P08240-2|SRPRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.26655005245	2	515.26655	1028.51855	1.1377	0.00058622	-4.3992	-0.0022668	-3.2615	-0.0016805	515.2635036049302	24.767	0.12059	24.755	24.731	24.851	-0.012392	1296	73	0.8394264	0.044272304	0.83790696	340.72736	0	17.970337						212	6	3	NaN	NaN	NaN	0.78264	1	9516	9516		11.548	0.94349	1	40048	+		16695	10879	9698	9906	13205	13205					0.00542864000112786
MDYSVKIKFSW	11	Unmodified	_MDYSVKIKFSW_					0	0	0		nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2;nc|ENSG00000167703|Q8N370-4|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3550307087501	2	702.355031	1402.69551	1.0208	0.00071696	-4.3426	-0.00305	-3.3218	-0.002333	702.3529548352301	24.116	0.072437	24.116	24.092	24.164	0	1041	40	0.9955231	0.02376312	0.9955231	402.661	0	9.611481						64	4	2	NaN	NaN	NaN	0.72342	1	20088	20088		5.9198	0.90291	1	4901.7			16696	4563	9699	9907	13206	13206					0.010268550397313447
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF;ENSG00000163902|ENST00000296255|RPN1	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	ENST00000481168.1_1_3:128363760-128369658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4389656909	1	906.438966	905.431689	2.349	0.0021292	-2.7132	-0.0024594	-0.36426	-0.00033018	906.4358110684078	27.639	0.048256	27.629	27.629	27.677	-0.009552	369	40	1.4001206	0.02320242	1.3986012	284.67227	0	4.7175293						51	3	2	NaN	NaN	NaN	0.29681	1	6049	6049		19.118	4.1054	1	3356.1			16697	4270	9700	9908	13207	13207					-0.024809352743204727
MEAPAQLLF	9	Unmodified	_MEAPAQLLF_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.26515306895	2	510.265153	1018.51575	1.3506	0.00068918	-0.58378	-0.00029788	0.76684	0.00039129	510.2650258759082	31.766	0.12068	31.766	31.742	31.863	0	1296	94	0.8394264	0.05714482	0.8394264	340.77155	0	23.198364						355	6	4	NaN	NaN	NaN	0.14787	1	9319	9319		28.896	8.4469	1	63118			16698	8024	9701	9909	13208	13208					0.007235958225805916
MEAPAQLLF	9	Unmodified	_MEAPAQLLF_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.26515306895	2	510.265153	1018.51575	0.47947	0.00024466	1.4158	0.00072245	1.8953	0.0009671	510.2659187209695	31.765	0.21725	31.761	31.712	31.93	-0.0044155	1293	100	0.84127116	0.060838223	0.8397517	341.52042	0	24.697723						421	10	4	NaN	NaN	NaN	0.055351	1	9130	9130		44.638	12.186	1	71538			16699	8024	9701	9909	13209	13209					0.007235958225805916
MEAPAQLLF	9	Unmodified	_MEAPAQLLF_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.5230296713	1	1019.52303	1018.51575	1.1173	0.0011391	1.3739	0.0014007	2.4912	0.0025398	1019.5237275184505	31.765	0.1931	31.761	31.712	31.906	-0.0044155	186	94	1.5086359	0.054959893	1.5071164	306.22516	0	11.155884						454	9	4	NaN	NaN	NaN	0.054111	1	9131	9131		45.165	5.0111	1	92430			16700	8024	9701	9909	13210	13210					0.007235958225805916
MEATIHREPEK	11	Unmodified	_MEATIHREPEK_					0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.8349937584001	2	670.834994	1339.65543	1.0193	0.00068381	4.0498	0.0027168	5.0692	0.0034006	670.8380479021079	27.156	0.14481	27.146	27.049	27.194	-0.010126	1092	52	0.9644182	0.03113848	0.96289873	390.25906	0	12.600433						139	7	3	NaN	NaN	NaN	0.63477	1	18539	18539		11.739	2.1272	1	16413	+		16701	8562	9702	9910	13211	13211					-0.0008069163084201136
MEATIHREPEK	11	Unmodified						0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	670.834994	1339.65543	1.1903	0.0007985	6.4124	0.0043017	7.6027	0.0051002	670.8391941418184	27.133	0.048237	27.133	27.109	27.157	0	1095	49	0.9625867	0.029308379	0.9625867	389.5179		11.859863	-0.0066061	0.0015859	-0.00015602	NaN	11.739	95	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12696	+		16702	8562	9702	9910							-0.0008069163084201136
MEATIHREPEK	11	Unmodified						0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	670.834994	1339.65543	1.0193	0.00068381	4.0498	0.0027168	5.0692	0.0034006	670.8380479021079	27.156	0.14481	27.146	27.049	27.194	-0.010126	1092	52	0.9644182	0.03113848	0.96289873	390.25906		12.600433	0.0066061	-0.0015839	0.00015602	NaN	11.739	139	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16413	+		16703	8562	9702	9910							-0.0008069163084201136
MEDEEGQSE	9	Unmodified	_MEDEEGQSE_					0	0	0		ENST00000569504.5_1_16:67859786-67861483:+|nuORF;nc|ENSG00000102904|Q2TAA8-2|TSNAXIP1;ENST00000466164.5_1_16:67859786-67861893:+|nuORF;ENST00000568990.5_1_16:67859786-67861893:+|nuORF;nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1	ENST00000569504.5_1_16:67859786-67861483:+|nuORF	ENST00000569504.5_1_16:67859786-67861483:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.1874936437001	2	527.187494	1052.36043	1.2809	0.00067529	-0.016742	-8.8264E-06	1.2642	0.00066646	527.6872174264773	29.231	0.048273	29.224	29.2	29.248	-0.0077209	1308	40	0.83204526	0.023995101	0.8305259	337.63025	0	9.736816						68	3	3	NaN	NaN	NaN	0.66822	1	10492	10492		1.9246	0	1	4934.6			16704	1398	9703	9911	13212	13212					-0.16365144560268163
MEDEEGQSE	9	Unmodified						0	0	0		ENST00000569504.5_1_16:67859786-67861483:+|nuORF;nc|ENSG00000102904|Q2TAA8-2|TSNAXIP1;ENST00000466164.5_1_16:67859786-67861893:+|nuORF;ENST00000568990.5_1_16:67859786-67861893:+|nuORF;nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1	ENST00000569504.5_1_16:67859786-67861483:+|nuORF	ENST00000569504.5_1_16:67859786-67861483:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.187494	1052.36043	1.4787	0.00077955	-1.6149	-0.00085136	-0.13621	-7.181E-05	527.6883014863836	29.232	0.096508	29.232	29.208	29.305	0	1311	31	0.83019954	0.018456757	0.83019954	336.8813		7.489441	0.0042402	-0.00063645	-0.00016317	NaN	1.9246	57	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3076			16705	1398	9703	9911							-0.16365144560268163
MEEAVAQVL	9	Unmodified	_MEEAVAQVL_					0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4972088513001	1	989.497209	988.489932	1.432	0.0014169	-4.4991	-0.0044518	-3.0671	-0.0030349	989.4928747959159	34.999	0.24121	34.999	34.951	35.192	0	303	73	1.4393384	0.042723894	1.4393384	292.2776	0	8.67569						318	11	3	NaN	NaN	NaN	0.10956	1	8158	8158		34.439	1.0135	1	44658			16706	95	9704	9912	13213	13213					-0.004772984196847574
MEEAVAQVL	9	Unmodified	_MEEAVAQVL_					0	0	0		ENST00000533223.1_1_11:117257895-117280842:+|nuORF;CEP164|p.E1033Kfs*9|1|0.21|ENSG00000110274|chr11:117396058-117396064|CTGGAGG/-|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	ENST00000533223.1_1_11:117257895-117280842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.4972088513001	1	989.497209	988.489932	1.4162	0.0014013	-3.6364	-0.0035982	-2.2202	-0.0021969	989.4930713032678	34.998	0.21716	34.998	34.95	35.167	-4.5776E-05	300	64	1.4411188	0.037389398	1.4395994	292.63913	0	7.592407						267	10	3	NaN	NaN	NaN	0.13602	1	7992	7992		30.61	0.57471	1	42801			16707	95	9704	9912	13214	13214					-0.004772984196847574
MEEEDELT	8	Unmodified	_MEEEDELT_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-4|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-4|PPP4R3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.19733004849996	2	498.19733	994.380107	1.7724	0.00088299	-0.93291	-0.00046478	0.83945	0.00041821	498.1962802083525	18.65	0.11997	18.636	18.588	18.708	-0.014061	1368	40	0.7950918	0.024044454	0.79357237	322.878	0	9.764191						90	6	2	NaN	NaN	NaN	0.8439	1	8193	8193		3.1533	0	1	6513.6	+		16708	8832	9705	9913	13215	13215					-0.11730768549534787
MEEEDKGHFL	10	Unmodified	_MEEEDKGHFL_					0	0	0			REV__ENSG00000070182|ENST00000644917|SPTB	REV__ENSG00000070182|ENST00000644917|SPTB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.7740705233001	2	617.774071	1233.53359	1.8286	0.0011297	-7.0004	-0.0043247	-5.1718	-0.003195	618.2724306384974	34.709	0.048264	34.708	34.66	34.708	-0.00064468	1188	55	0.90571284	0.03306806	0.9041934	366.82532	0	13.393005						42	3	2	NaN	NaN	NaN	0.76892	1	16632	16632		3.2116	0.32214	1	2343	+		16709	8567	9706	9914	13216	13216					-0.0738373371320904
MEELRHQA	8	Unmodified	_MEELRHQA_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.24528329410003	2	507.245283	1012.47601	1.9483	0.00098825	-1.2813	-0.00064993	0.66698	0.00033832	507.2450931836171	11.788	0.19215	11.788	11.716	11.908	0	1290	37	0.84311575	0.022136092	0.84311575	342.29648	0	8.987061						113	9	2	NaN	NaN	NaN	0.76406	1	9073	9073		14.042	1.4537	1	8181.3			16710	5661	9707	9915	13217	13217					-0.02972531128114042
MEEMWDMLY	9	Unmodified	_MEEMWDMLY_					0	0	0			REV__SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	REV__SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.2427030673501	2	624.242703	1246.47085	0.86602	0.00054061	-7.9086	-0.0049369	-7.0426	-0.0043963	624.2381222769519	21.922	0.19268	21.908	21.812	22.004	-0.013897	1179	46	0.9112251	0.027558208	0.90970564	369.01544	0	11.160156						202	9	4	NaN	NaN	NaN	0.45297	1	16934	16934		11.548	4.6852	1	23491	+		16711	10691	9708	9916	13218	13218					-0.1425233909724284
MEEMWDMLY	9	Unmodified						0	0	0			REV__SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	REV__SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.242703	1246.47085	0.86602	0.00054061	-7.9086	-0.0049369	-7.0426	-0.0043963	624.2381222769519	21.922	0.19268	21.908	21.812	22.004	-0.013897	1179	46	0.9112251	0.027558208	0.90970564	369.01544		11.160156	-0.0070566	-9.3519E-05	-0.00075972	NaN	11.548	202	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23491	+		16712	10691	9708	9916							-0.1425233909724284
MEETAYPALEE	11	Unmodified	_MEETAYPALEE_					0	0	0		ENST00000569205.5_2_15:55670498-55677817:-|nuORF;CCPG1|p.L321Yfs*8|1|0.09|ENSG00000260916|chr15:55360813-55360813|G/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6-3|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	ENST00000569205.5_2_15:55670498-55677817:-|nuORF	ENST00000569205.5_2_15:55670498-55677817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.77901851545	2	641.779019	1281.54348	1.8723	0.0012016	-3.6692	-0.0023548	-1.7968	-0.0011532	641.7764706551574	30.27	0.21719	30.27	30.173	30.391	0	1140	67	0.93509084	0.040372968	0.93509084	378.5667	0	16.344788						232	10	3	NaN	NaN	NaN	0.7072	1	18444	18444		6.9844	1.7955	1	18435			16713	83	9709	9917	13219	13219					-0.0860259049850356
MEFCAQGQLY	10	Unmodified	_MEFCAQGQLY_					0	0	0		MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53879838-53880075:-|nuORF	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2544593844001	2	595.254459	1188.49437	1.9801	0.0011786	-7.416	-0.0044144	-5.4359	-0.0032357	595.2500786187013	18.412	0.11984	18.412	18.412	18.532	0	1218	34	0.8873258	0.020235598	0.8873258	359.529	0	8.199097						68	6	2	NaN	NaN	NaN	0.77421	1	16095	16095		1.9246	0.25428	1	4608.6			16714	3226	9710	9918	13220	13220					-0.09234157268429044
MEFLFNKTGW	10	Unmodified	_MEFLFNKTGW_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8077163754001	2	636.807716	1271.60088	1.8368	0.0011697	-3.6733	-0.0023392	-1.8365	-0.0011695	636.8053535951	28.315	0.12062	28.315	28.291	28.412	0	1182	76	0.9093879	0.04590559	0.9093879	368.19168	0	18.586212						247	6	3	NaN	NaN	NaN	0.25358	1	18261	18261		30.925	16.5	1	23975			16715	1366	9711	9919	13221	13221					-0.024056587115865113
MEFLFNKTGW	10	Unmodified	_MEFLFNKTGW_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8077163754001	2	636.807716	1271.60088	1.364	0.00086863	-2.9574	-0.0018833	-1.5934	-0.0010147	636.8051583180924	28.339	0.096508	28.33	28.305	28.402	-0.0089779	1179	91	0.9112251	0.05507189	0.90970564	368.93552	0	22.297424						198	5	3	NaN	NaN	NaN	0.044307	1	17447	17447		53.652	30.534	1	19773			16716	1366	9711	9919	13222	13222					-0.024056587115865113
MEFLFNKTGW	10	Oxidation (M)	_M(Oxidation (M))EFLFNKTGW_		M(1)EFLFNKTGW		M(49)EFLFNKTGW	0	0	1		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.8051736864501	2	644.805174	1287.59579	2.3355	0.001506	-2.5759	-0.0016609	-0.24032	-0.00015496	644.80433867947	25.95	0.14479	25.95	25.926	26.07	0	1149	64	0.92958635	0.038535774	0.92958635	376.31937	0	15.60022						242	7	4	NaN	NaN	NaN	0.080496	1	18556	18556		48.65	34.225	1	23644			16717	1366	9711	9920	13223	13223		153			-0.0364996257421808
MEGPGWDFYM	10	Unmodified	_MEGPGWDFYM_					0	0	0			REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.74118483365	2	616.741185	1231.46782	0.099943	6.1639E-05	-5.2253	-0.0032227	-5.1254	-0.003161	617.2391469396397	31.62	0.19308	31.616	31.544	31.737	-0.0044155	1176	61	0.9130621	0.036746264	0.91154265	369.80872	0	14.882996						257	9	4	NaN	NaN	NaN	0.76548	1	16569	16569		3.5698	0.68031	1	24582	+		16718	9395	9712	9921	13224	13224					-0.13865846159774264
MEGPGWDFYM	10	Unmodified						0	0	0			REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.741185	1231.46782	0.44215	0.00027269	-6.4767	-0.0039944	-6.0345	-0.0037217	616.7381621146931	31.621	0.19311	31.621	31.549	31.742	0	1179	61	0.9112251	0.036750257	0.9112251	369.0647		14.884613	0.0027452	-0.00097006	-0.00015879	NaN	3.5698	256	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22529	+		16719	9395	9712	9921							-0.13865846159774264
MEGPGWDFYM	10	Unmodified						0	0	0			REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.741185	1231.46782	0.099943	6.1639E-05	-5.2253	-0.0032227	-5.1254	-0.003161	617.2391469396397	31.62	0.19308	31.616	31.544	31.737	-0.0044155	1176	61	0.9130621	0.036746264	0.91154265	369.80872		14.882996	-0.0027452	0.0005735	0.00015879	NaN	3.5698	257	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24582	+		16720	9395	9712	9921							-0.13865846159774264
MEGPLPFWKGL	11	Unmodified	_MEGPLPFWKGL_					0	0	0			REV__ENST00000428670.7_1_12:90049866-90102507:-|nuORF	REV__ENST00000428670.7_1_12:90049866-90102507:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.5582482626333	3	425.558248	1273.65292	1.3352	0.00056821	-8.5962	-0.0036582	-7.261	-0.00309	425.5546693981635	15.198	0.21623	15.198	15.174	15.39	0	1440	37	0.7506418	0.02225393	0.7506418	455.86646	0	13.514862						108	10	2	NaN	NaN	NaN	0.76304	1	18296	18296		1.1021	0	1	12492	+		16721	12140	9713	9922	13225	13225					0.027035047021399805
MEGSPGAM	8	Unmodified	_MEGSPGAM_					0	0	0			REV__ENST00000436008.6_1_6:3272724-3272982:-|nuORF	REV__ENST00000436008.6_1_6:3272724-3272982:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	779.3062369584001	1	779.306237	778.29896	2.492	0.001942	0.80127	0.00062444	3.2933	0.0025665	779.3078075191373	23.079	0.048128	23.079	23.055	23.103	0	579	34	1.2747238	0.01977992	1.2747238	259.80957	0	4.031494						34	3	2	NaN	NaN	NaN	0.8439	1	4469	4469		3.1533	0	1	2102.9	+		16722	12176	9714	9923	13226	13226					-0.09905703002618793
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.2025759517333	3	410.202576	1227.5859	1.5345	0.00062946	-0.35378	-0.00014512	1.1807	0.00048434	410.2024447455933	16.566	0.16783	16.566	16.494	16.662	0	1482	37	0.72465914	0.022285342	0.72465914	440.26392	0	13.539368						101	8	3	NaN	NaN	NaN	0.61413	1	17185	17185		4.7291	0.82039	1	8044.4			16723	841;3442	9715	9924	13227	13227					-0.01879105788952984
MEKKETQIFF	10	Unmodified	_MEKKETQIFF_					0	0	0		DMXL2|p.E874Q|1|0.13|ENSG00000104093|chr15:51514466-51514466|C/G|missense_variant	DMXL2|p.E874Q|1|0.13|ENSG00000104093|chr15:51514466-51514466|C/G|missense_variant	DMXL2|p.E874Q|1|0.13|ENSG00000104093|chr15:51514466-51514466|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8339311259	2	650.833931	1299.65331	1.362	0.00088641	-6.4606	-0.0042048	-5.0986	-0.0033184	650.8292632110205	34.348	0.12052	34.348	34.3	34.421	0	1140	49	0.93509084	0.029349506	0.93509084	378.51047	0	11.8802185						79	6	2	NaN	NaN	NaN	0.5917	1	18773	18773		15.463	4.4976	1	5644.5			16724	260	9716	9925	13228	13228					0.015468796313371058
MEKRDMNEVE	10	Unmodified	_MEKRDMNEVE_					0	0	0		ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.52516700943335	3	427.525167	1279.55367	1.6986	0.00072619	-6.6817	-0.0028566	-4.9831	-0.0021304	427.52263731021975	16.107	0.21573	16.094	15.999	16.214	-0.012611	1473	43	0.7302302	0.025996745	0.7287108	443.44852	0	15.787109						248	10	4	NaN	NaN	NaN	0.73444	1	17587	17587		2.7042	0.66833	1	35810			16725	4313	9717	9926	13229	13229					-0.07492306044900943
MELGLSWVF	9	Unmodified	_MELGLSWVF_					0	0	0		nc|ENSG00000211942|P01766|IGHV3-13;nc|ENSG00000211938|P01780|IGHV3-7	nc|ENSG00000211942|P01766|IGHV3-13	nc|ENSG00000211942|P01766|IGHV3-13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5386797355	1	1081.53868	1080.5314	0.64239	0.00069477	1.758	0.0019013	2.4004	0.0025961	1081.541961809944	37.723	0.09621	37.723	37.699	37.795	0	96	49	1.5617468	0.028274894	1.5617468	316.76254	0	5.7348633						77	5	2	NaN	NaN	NaN	0.49672	1	12002	12002		9.746	0	1	5356.1			16726	8033	9718	9927	13230	13230					-0.005641176603603526
MELPIVLLP	9	Unmodified	_MELPIVLLP_					0	0	0			REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.8091964318501	2	512.809196	1023.60384	1.21	0.00062048	-2.3524	-0.0012063	-1.1424	-0.00058585	512.8080113828518	37.939	0.21624	37.939	37.843	38.059	0	1257	94	0.86339295	0.05708307	0.86339295	350.47772	0	23.171783						440	10	4	NaN	NaN	NaN	0.20577	1	9533	9533		24.961	0	1	63585	+		16727	10407	9719	9928	13231	13231					0.09298216413208138
MELPIVLLP	9	Unmodified	_MELPIVLLP_					0	0	0			REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.6111163971	1	1024.61112	1023.60384	1.78	0.0018238	-0.80044	-0.00082014	0.97956	0.0010037	1024.6107780806915	37.961	0.28844	37.964	37.844	38.132	0.0034256	165	103	1.5210435	0.06023085	1.5195241	308.72318	0	12.224915						689	13	4	NaN	NaN	NaN	0.14301	1	9356	9356		29.598	0.9318	1	118460	+		16728	10407	9719	9928	13232	13232					0.09298216413208138
MELPIVLLP	9	Unmodified						0	0	0			REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.809196	1023.60384	1.21	0.00062048	-2.3524	-0.0012063	-1.1424	-0.00058585	512.8080113828518	37.939	0.21624	37.939	37.843	38.059	0	1257	94	0.86339295	0.05708307	0.86339295	350.47772		23.171783	-0.000469	-0.00024432	0.00075972	NaN	24.961	440	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63585	+		16729	10407	9719	9928							0.09298216413208138
MEMLQEDLKE	10	Unmodified	_MEMLQEDLKE_					0	0	0			REV__NIN|p.V1951E|1|0.12|ENSG00000100503|chr14:50735541-50735541|A/T|missense_variant	REV__NIN|p.V1951E|1|0.12|ENSG00000100503|chr14:50735541-50735541|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.52991803633324	3	422.529918	1264.56792	1.6181	0.00068368	8.0485	0.0034007	9.6665	0.0040844	422.5334858825488	28.17	0.048307	28.161	28.161	28.209	-0.0089779	1491	40	0.7190863	0.02414906	0.71756685	436.73627	0	14.66687						43	3	2	NaN	NaN	NaN	0.77594	1	17299	17299		0.55697	0	1	2965.4	+		16730	13270	9720	9929	13233	13233					-0.053776536166424194
MENGALVL	8	Unmodified	_MENGALVL_					0	0	0		FAM118B|p.M293Cfs*25|1|0.19|ENSG00000197798|chr11:126256747-126256747|A/-|frameshift_variant;ENSG00000197798|ENST00000533050|FAM118B	FAM118B|p.M293Cfs*25|1|0.19|ENSG00000197798|chr11:126256747-126256747|A/-|frameshift_variant	FAM118B|p.M293Cfs*25|1|0.19|ENSG00000197798|chr11:126256747-126256747|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.4389656909001	1	846.438966	845.431689	-0.71724	-0.0006071	-3.5893	-0.0030381	-4.3065	-0.0036452	846.436076342551	53.713	0.22607	53.712	53.647	53.873	-0.00059128	393	52	1.3858368	0.030367494	1.3843174	282.06732	0	6.1808777						225	9	3	NaN	NaN	NaN	0.84727	1	5197	5197		1.2418	0	1	32167			16731	5733	9721	9930	13234	13234					0.0027906472569156904
MEPGPALA	8	Unmodified	_MEPGPALA_					0	0	0		nc|ENSG00000187123|Q86Y78-2|LYPD6;ENSG00000187123|ENST00000334166|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.3862018389	1	785.386202	784.378925	1.6441	0.0012913	2.5737	0.0020213	4.2178	0.0033126	785.3883644856793	32.803	0.096485	32.8	32.776	32.872	-0.0031052	522	46	1.3088527	0.026918054	1.3073332	266.72977	0	5.4855957						75	5	2	NaN	NaN	NaN	0.8439	1	4466	4466		3.1533	0	1	5026.7			16732	5497	9722	9931	13235	13235					-0.021888933371315034
MERVDNKM	8	Unmodified	_MERVDNKM_					0	0	0		ENST00000577273.1_1_17:66253064-66253124:+|nuORF	ENST00000577273.1_1_17:66253064-66253124:+|nuORF	ENST00000577273.1_1_17:66253064-66253124:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.4757619027001	1	1022.47576	1021.46849	2.1852	0.0022343	1.506	0.0015398	3.6912	0.0037741	1022.4764993181656	27.253	0.14475	27.253	27.205	27.35	0	219	112	1.4891195	0.06566012	1.4891195	302.252	0	13.3272705						185	7	2	NaN	NaN	NaN	0.54116	1	9423	9423		28.896	3.9346	1	39228			16733	7664	9723	9932	13236	13236					-0.04139006720049565
MERVDNKM	8	Unmodified						0	0	0		ENST00000577273.1_1_17:66253064-66253124:+|nuORF	ENST00000577273.1_1_17:66253064-66253124:+|nuORF	ENST00000577273.1_1_17:66253064-66253124:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1022.47576	1021.46849	1.361	0.0013916	-1.1487	-0.0011745	0.21229	0.00021707	1022.4746195966884	27.253	0.072399	27.242	27.218	27.291	-0.010126	219	82	1.4891195	0.04788363	1.4876001	302.252		9.719116	-0.005429	-0.0012644	-0.00075972	NaN	28.896	116	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25199			16734	7664	9723	9932							-0.04139006720049565
MESGVLVAM	9	Unmodified	_MESGVLVAM_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P;ENSG00000183313|ENST00000332249|OR52L1	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4529011956001	1	936.452901	935.445625	2.3255	0.0021777	-2.0295	-0.0019006	0.29593	0.00027713	936.4527805274469	23.465	0.096598	23.451	23.403	23.5	-0.013294	339	49	1.4179583	0.028528094	1.4164388	288.16046	0	5.7975464						124	5	3	NaN	NaN	NaN	0.23112	1	6589	6589		23.334	2.779	1	10949			16735	5302	9724	9933	13237	13237					-0.02468025837526966
MESGVLVAM	9	Unmodified	_MESGVLVAM_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P;ENSG00000183313|ENST00000332249|OR52L1	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4529011956001	1	936.452901	935.445625	2.5629	0.0024	0.8312	0.00077838	3.3941	0.0031784	936.4541469139231	23.392	0.024126	23.379	23.355	23.379	-0.013296	336	43	1.419741	0.024959445	1.4182216	288.52274	0	5.0723267						45	2	2	NaN	NaN	NaN	0.23112	1	6592	6592		23.334	2.779	1	5128.9			16736	5302	9724	9933	13238	13238					-0.02468025837526966
MEWYVILA	8	Unmodified	_MEWYVILA_					0	0	0			REV__nc|ENSG00000120217|Q9NZQ7-3|CD274	REV__nc|ENSG00000120217|Q9NZQ7-3|CD274	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5172160119	1	1024.51722	1023.50994	1.7356	0.0017782	2.4253	0.0024848	4.161	0.004263	1024.5195301055594	26.408	0.14478	26.397	26.373	26.517	-0.011137	165	97	1.5210435	0.056729794	1.5195241	308.72354	0	11.514374						392	7	4	NaN	NaN	NaN	0.62311	1	9313	9313		23.85	4.7321	1	72905	+		16737	9309	9725	9934	13239	13239					-0.0008750268908670478
MEYLICALSW	10	Unmodified	_MEYLICALSW_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-3|NEK11	REV__nc|ENSG00000114670|Q8NG66-3|NEK11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7906777152001	2	614.790678	1227.5668	0.78603	0.00048324	-0.3386	-0.00020817	0.44743	0.00027507	614.7910969911582	34.709	0.1205	34.708	34.66	34.78	-0.00064468	1158	58	0.92408	0.034884453	0.9225606	374.28436	0	14.129425						135	6	2	NaN	NaN	NaN	0.65442	1	16481	16481		11.17	1.5587	1	13665	+		16738	13108	9726	9935	13240	13240					-0.037878231948525354
MFDEPVLL	8	Unmodified	_MFDEPVLL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4855815325001	1	963.485582	962.478305	0.61347	0.00059107	0.7332	0.00070643	1.3467	0.0012975	963.4866836468866	31.789	0.096575	31.785	31.761	31.857	-0.0044174	237	73	1.4784646	0.042646766	1.4769452	300.33423	0	8.663239						239	5	3	NaN	NaN	NaN	0.15767	1	7245	7245		53.324	22.533	1	26034			16739	331	9727	9936	13241	13241					-0.004434954430280413
MFDEPVLL	8	Unmodified						0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	963.485582	962.478305	1.0111	0.00097422	0.25029	0.00024115	1.2614	0.0012154	963.4856036351129	31.79	0.16894	31.79	31.742	31.911	0	240	127	1.4766881	0.074703336	1.4766881	299.97336		15.175201	0.002737	-0.00026123	-0.00012852	NaN	53.324	276	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27725			16740	331	9727	9936							-0.004434954430280413
MFDIVGTHL	9	Unmodified	_MFDIVGTHL_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7627775555001	2	516.762778	1031.511	1.7141	0.00088579	0.19235	9.9397E-05	1.9065	0.00098518	516.7631111026524	26.722	0.12114	26.722	26.698	26.819	0	1236	70	0.876284	0.04236108	0.876284	355.6744	0	17.19394						185	6	3	NaN	NaN	NaN	0.023074	1	9843	9843		68.108	39.442	1	26785			16741	4001	9728	9937	13242	13242					-0.003492883201715813
MFDIVGTHL	9	Unmodified	_MFDIVGTHL_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7627775555001	2	516.762778	1031.511	1.0128	0.00052337	0.95487	0.00049344	1.9676	0.0010168	516.7635407742359	26.746	0.21719	26.735	26.687	26.904	-0.010645	1239	52	0.87444305	0.031300247	0.8729236	354.9272	0	12.704437						168	10	3	NaN	NaN	NaN	0.011942	1	9630	9630		87.021	57.422	1	25661			16742	4001	9728	9937	13243	13243					-0.003492883201715813
MFDKDVVML	9	Unmodified	_MFDKDVVML_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2721208213001	2	549.272121	1096.52969	1.799	0.00098814	2.664	0.0014633	4.463	0.0024514	549.2744383807451	26.046	0.1207	26.046	26.022	26.143	0	1179	112	0.9112251	0.06807256	0.9112251	369.56766	0	27.608337						236	6	4	NaN	NaN	NaN	0.46713	1	12691	12691		10.965	2.046	1	20625			16743	471	9729	9938	13244	13244					-0.014714947406218926
MFDKDVVML	9	Unmodified	_MFDKDVVML_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2721208213001	2	549.272121	1096.52969	1.9958	0.0010962	5.2457	0.0028813	7.2415	0.0039775	549.2765787286966	26.07	0.072409	26.059	26.035	26.107	-0.011137	1179	118	0.9112251	0.07175213	0.90970564	369.56766	0	29.100677						193	4	3	NaN	NaN	NaN	0.12104	1	12359	12359		32.778	14.744	1	24141			16744	471	9729	9938	13245	13245					-0.014714947406218926
MFDLTTRLIL	10	Unmodified	_MFDLTTRLIL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38;USP38|p.V60Wfs*42|1|0.68|ENSG00000170185|chr4:143185627-143185627|G/-|frameshift_variant	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8468415359	2	611.846842	1221.67913	0.4018	0.00024584	-3.7904	-0.0023191	-3.3886	-0.0020733	611.8463213043703	31.646	0.072397	31.646	31.621	31.694	0	1134	46	0.9387595	0.027513683	0.9387595	380.25046	0	11.144562						75	4	2	NaN	NaN	NaN	0.095478	1	17026	17026		46.588	23.253	1	15570			16745	4713	9730	9939	13246	13246					0.07715773873610487
MFEASSGV	8	Unmodified	_MFEASSGV_					0	0	0			REV__ENSG00000172137|ENST00000302628|CALB2	REV__ENSG00000172137|ENST00000302628|CALB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.18382874275005	2	414.183829	826.353105	1.1205	0.00046408	-3.9674	-0.0016432	-2.8469	-0.0011791	414.18230344358795	30.656	0.21723	30.656	30.608	30.825	0	1413	58	0.7673241	0.03521055	0.7673241	312.46487	0	14.338226						265	10	4	NaN	NaN	NaN	0.84207	1	5098	5098		3.5732	1.3969	1	40146	+		16746	10648	9731	9940	13247	13247					-0.06701787579390839
MFGFFLNQEFV	11	Unmodified	_MFGFFLNQEFV_					0	0	0		ENST00000495039.1_1_7:92888888-92902105:+|nuORF	ENST00000495039.1_1_7:92888888-92902105:+|nuORF	ENST00000495039.1_1_7:92888888-92902105:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.82864878275	2	689.828649	1377.64274	2.5367	0.0017499	-10.554	-0.0072802	-8.017	-0.0055304	689.8226418226018	23.176	0.024078	23.176	23.176	23.2	0	1044	25	0.99369496	0.014625728	0.99369496	401.99295	0	5.916748						29	2	2	NaN	NaN	NaN	0.688	1	19872	19872		8.2448	0.65722	1	1992.3			16747	7284	9732	9941	13248	13248					-0.03097103023105774
MFGKEDHKPF	10	Unmodified	_MFGKEDHKPF_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.29751582985	2	618.297516	1234.58048	1.5788	0.00097619	3.4698	0.0021454	5.0487	0.0031216	618.3001500619328	25.346	0.21714	25.346	25.274	25.491	0	1152	67	0.92775106	0.04037732	0.92775106	375.74753	0	16.35318						401	10	3	NaN	NaN	NaN	0.507	1	17387	17387		19.164	3.7009	1	67054			16748	975	9733	9942	13249	13249					-0.02742829371436528
MFIIAKAVF	9	Unmodified	_MFIIAKAVF_					0	0	0		ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3040812642	2	520.304081	1038.59361	1.3468	0.00070075	-8.7983	-0.0045778	-7.4515	-0.0038771	520.2988731945628	26.843	0.072405	26.843	26.795	26.867	0	1257	40	0.86339295	0.023948371	0.86339295	350.4106	0	9.719543						96	4	3	NaN	NaN	NaN	0.47587	1	10157	10157		10.605	0.24481	1	12636			16749	7790	9734	9943	13250	13250					0.0758565347862259
MFIIAKAVF	9	Unmodified						0	0	0		ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	ENST00000609104.5_1_10:11504347-11504431:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.304081	1038.59361	1.2428	0.00064663	-8.0994	-0.0042141	-6.8566	-0.0035675	520.8018153065966	26.577	0.21716	26.566	26.47	26.687	-0.010645	1257	61	0.86339295	0.036837757	0.8618735	350.4106		14.950714	-0.13845	0.00023177	-0.00075972	NaN	10.605	277	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53692			16750	7790	9734	9943							0.0758565347862259
MFLKSKGTKE	10	Unmodified	_MFLKSKGTKE_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8233664396001	2	584.823366	1167.63218	1.5659	0.00091577	-11.068	-0.006473	-9.5023	-0.0055572	584.8162195480197	22.958	0.072338	22.945	22.921	22.993	-0.01354	1206	55	0.894683	0.03309667	0.89316356	362.58435	0	13.412964						123	4	3	NaN	NaN	NaN	0.72369	1	14872	14872		6.4299	0.73577	1	14788			16751	3273	9735	9944	13251	13251					0.05506914322495504
MFLSQLFF	8	Oxidation (M)	_M(Oxidation (M))FLSQLFF_		M(1)FLSQLFF		M(41)FLSQLFF	0	0	1			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5172160119	1	1048.51722	1047.50994	1.8898	0.0019814	-0.35852	-0.00037591	1.5312	0.0016055	1048.5170485102558	36.35	0.16875	36.35	36.302	36.471	0	153	64	1.5281296	0.03719151	1.5281296	310.0673	0	7.5463867						269	8	3	NaN	NaN	NaN	0.30832	1	10524	10524		41.46	7.7618	1	34082	+		16752	11117	9736	9945	13252	13252		651			-0.011915026890619629
MFPATLTP	8	Unmodified	_MFPATLTP_					0	0	0		ENST00000498706.5_1_2:64808202-64819166:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	ENST00000498706.5_1_2:64808202-64819166:+|nuORF	ENST00000498706.5_1_2:64808202-64819166:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4488020957	1	877.448802	876.441526	1.1442	0.001004	-3.6536	-0.0032058	-2.5093	-0.0022018	877.4458172806993	37.121	0.16879	37.121	37.072	37.241	0	1179	82	0.9112251	0.049642324	0.9112251	185.36185	0	10.098282						209	8	2	NaN	NaN	NaN	0.84692	1	5752	5752		1.4396	0	1	17215			16753	2237	9737	9946	13253	13253					-0.0016374726893673142
MFPATLTP	8	Unmodified						0	0	0		ENST00000498706.5_1_2:64808202-64819166:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	ENST00000498706.5_1_2:64808202-64819166:+|nuORF	ENST00000498706.5_1_2:64808202-64819166:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	877.448802	876.441526	0.88129	0.00077328	-5.0164	-0.0044017	-4.1351	-0.0036284	877.4443203934318	37.167	0.1686	37.169	37.072	37.241	0.0022507	1182	67	0.9093879	0.040434003	0.90786844	184.98811		8.225113	0.02405	-0.00070212	-0.0016783	NaN	1.4396	153	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11831			16754	2237	9737	9946							-0.0016374726893673142
MFPFSCFYQ	9	Unmodified	_MFPFSCFYQ_					0	0	0			REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF	REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2433633818501	2	585.243363	1168.47217	1.1082	0.00064857	-0.60864	-0.0003562	0.49957	0.00029237	585.7447027659615	32.513	0.19304	32.51	32.438	32.631	-0.0031052	1221	79	0.885486	0.047827005	0.88396657	358.85406	0	19.382446						608	9	6	NaN	NaN	NaN	0.29681	1	14886	14886		19.118	3.6556	1	112240	+		16755	12069	9738	9947	13254	13254					-0.10532336946175747
MFPGGGGG	8	Unmodified	_MFPGGGGG_					0	0	0		ENST00000431361.1_1_20:61432323-61432428:-|nuORF	ENST00000431361.1_1_20:61432323-61432428:-|nuORF	ENST00000431361.1_1_20:61432323-61432428:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.2868221453002	1	679.286822	678.279546	1.1631	0.00079007	-7.7136	-0.0052397	-6.5505	-0.0044497	679.2815291552577	28.411	0.048283	28.402	28.402	28.45	-0.0089798	1083	73	0.9699114	0.043962598	0.96839195	198.18822	0	8.983154						88	3	2	NaN	NaN	NaN	0.83849	1	2714	2714		4.0537	2.8118	1	8591.1			16756	6971	9739	9948	13255	13255					-0.07246291231194846
MFREKLEMFTP	11	Unmodified	_MFREKLEMFTP_					0	0	0			REV__ENST00000605457.5_1_6:112392617-112397333:-|nuORF	REV__ENST00000605457.5_1_6:112392617-112397333:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.8543406045001	2	714.854341	1427.69413	1.8833	0.0013463	5.6865	0.004065	7.5697	0.0054113	714.8586505533852	18.412	0.11989	18.412	18.388	18.508	0	1035	49	0.99917877	0.029245198	0.99917877	404.0705	0	11.826843						121	6	3	NaN	NaN	NaN	0.70497	1	20266	20266		7.1304	1.6804	1	16056	+		16757	8608	9740	9949	13256	13256					-0.0026110232067821926
MFTMHFHLL	9	Unmodified	_MFTMHFHLL_					0	0	0			REV__ENST00000368608.3_1_6:116599413-116599590:-|nuORF	REV__ENST00000368608.3_1_6:116599413-116599590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.7882724120001	2	588.788272	1175.56199	1.1745	0.00069156	-0.44407	-0.00026146	0.73047	0.0004301	588.7880495938416	24.502	0.14478	24.489	24.344	24.489	-0.012747	1176	91	0.9130621	0.055143297	0.91154265	370.00357	0	22.345947						293	7	3	NaN	NaN	NaN	0.3389	1	15089	15089		16.417	2.3751	1	55698	+		16758	11872	9741	9950	13257	13257					-0.018766625469652354
MFYLSKMTE	9	Unmodified	_MFYLSKMTE_					0	0	0		ENSG00000159650|ENST00000290868|UROC1;nc|ENSG00000159650|Q96N76-2|UROC1	ENSG00000159650|ENST00000290868|UROC1	ENSG00000159650|ENST00000290868|UROC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1149.5318797981001	1	1149.53188	1148.5246	2.2978	0.0026414	-1.1636	-0.0013376	1.1342	0.0013038	1149.5323216335232	32.804	0.096489	32.804	32.78	32.876	0	57	64	1.5847093	0.037077427	1.5847093	321.17984	0	7.514618						104	5	2	NaN	NaN	NaN	0.41766	1	14749	14749		13.003	2.9513	1	11441			16759	4035	9742	9951	13258	13258					-0.04371798603233401
MFYLSKMTE	9	Unmodified						0	0	0		ENSG00000159650|ENST00000290868|UROC1;nc|ENSG00000159650|Q96N76-2|UROC1	ENSG00000159650|ENST00000290868|UROC1	ENSG00000159650|ENST00000290868|UROC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1149.53188	1148.5246	2.0018	0.0023011	-0.11673	-0.00013418	1.8851	0.0021669	1149.532815095592	32.803	0.072369	32.8	32.8	32.872	-0.0031052	60	61	1.582944	0.03530991	1.5814246	320.82208		7.1564026	-0.0020814	0.00052151	-0.0016423	NaN	13.003	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8522.6			16760	4035	9742	9951							-0.04371798603233401
MFYTLNDLTMC	11	Unmodified	_MFYTLNDLTMC_					0	0	0		ENST00000466274.1_1_2:232321991-232322114:-|nuORF	ENST00000466274.1_1_2:232321991-232322114:-|nuORF	ENST00000466274.1_1_2:232321991-232322114:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.2901845762	2	676.290185	1350.56582	0.9311	0.00062969	7.4947	0.0050686	8.4258	0.0056983	676.2956277789748	20.525	0.14434	20.511	20.463	20.608	-0.014141	1131	52	0.94059354	0.031172097	0.93907416	380.58682	0	12.612946						191	7	4	NaN	NaN	NaN	0.66717	1	18673	18673		9.6116	2.6273	1	25369			16761	7112	9743	9952	13259	13259					-0.09544405626093067
MFYTLNDLTMC	11	Unmodified						0	0	0		ENST00000466274.1_1_2:232321991-232322114:-|nuORF	ENST00000466274.1_1_2:232321991-232322114:-|nuORF	ENST00000466274.1_1_2:232321991-232322114:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	676.290185	1350.56582	1.1003	0.00074413	7.9818	0.005398	9.0821	0.0061421	676.2958206537105	20.525	0.19251	20.525	20.477	20.67	0	1131	46	0.94059354	0.027507722	0.94059354	380.58682		11.13031	0.00697	0.0003258	0.00075972	NaN	9.6116	229	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29284			16762	7112	9743	9952							-0.09544405626093067
MGAGSARG	8	Unmodified	_MGAGSARG_					0	0	0		nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1	nc|ENSG00000196739|Q8IZC6-3|COL27A1	nc|ENSG00000196739|Q8IZC6-3|COL27A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3300839435001	1	706.330084	705.322807	-0.27489	-0.00019416	0.24717	0.00017458	-0.027725	-1.9583E-05	706.3313581545663	57.307	0.047905	57.306	57.282	57.33	-0.00053406	636	46	1.2405256	0.027027369	1.2390062	253.29224	0	5.5184937						55	3	2	NaN	NaN	NaN	0.84727	1	3247	3247		1.2418	0	1	4607.3			16763	5657	9744	9953	13260	13260					-0.041641014539322896
MGAIAGAL	8	Unmodified	_MGAIAGAL_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3807225305001	1	703.380723	702.373446	1.3659	0.00096078	-0.50794	-0.00035728	0.858	0.0006035	703.3801945376802	23.248	0.16888	23.234	23.186	23.355	-0.013294	609	70	1.2567334	0.041415572	1.255214	256.6221	0	8.456955						234	8	3	NaN	NaN	NaN	0.71635	1	3200	3200		18.034	0	1	28076	+		16764	8354	9745	9954	13261	13261					0.010354278710678955
MGAIAGAL	8	Unmodified						0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	703.380723	702.373446	1.3659	0.00096078	-0.50794	-0.00035728	0.858	0.0006035	703.3801945376802	23.248	0.16888	23.234	23.186	23.355	-0.013294	609	70	1.2567334	0.041415572	1.255214	256.6221		8.456955	0.0051417	-0.00021078	-0.00075972	NaN	18.034	234	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28076	+		16765	8354	9745	9954							0.010354278710678955
MGAPGPPG	8	Unmodified	_MGAPGPPG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.16269937015	2	342.162699	682.310846	1.4307	0.00048954	7.6359	0.0026127	9.0667	0.0031023	342.1652199010689	26.867	0.16891	26.867	26.819	26.988	0	1515	37	0.7042165	0.02231443	0.7042165	287.75208	0	9.11795						89	8	2	NaN	NaN	NaN	0.84651	1	2888	2888		1.6704	0	1	8524.5	+		16766	8655	9746	9955	13262	13262					-0.04301718197120863
MGAPGPPG	8	Unmodified						0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	342.162699	682.310846	1.4307	0.00048954	7.6359	0.0026127	9.0667	0.0031023	342.1652199010689	26.867	0.16891	26.867	26.819	26.988	0	1515	37	0.7042165	0.02231443	0.7042165	287.75208		9.11795	0.0057373	-0.0002845	-0.00017	NaN	1.6704	89	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8524.5	+		16767	8655	9746	9955							-0.04301718197120863
MGAPGPPG	8	Unmodified						0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.162699	682.310846	1.5374	0.00052605	8.6329	0.0029539	10.17	0.0034799	342.1651979701327	26.866	0.12066	26.856	26.808	26.928	-0.010645	1512	37	0.7060759	0.022311985	0.70455647	288.51187		9.116943	-0.0057373	0.00039775	0.00017	NaN	1.6704	85	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9988.7	+		16768	8655	9746	9955							-0.04301718197120863
MGDPHQQTL	9	Unmodified	_MGDPHQQTL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7372910865001	2	513.737291	1025.46003	1.1177	0.00057418	-2.2137	-0.0011373	-1.096	-0.00056307	513.736919972813	14.38	0.047899	14.369	14.345	14.393	-0.011219	1314	43	0.8283535	0.02584225	0.8268341	336.24606	0	10.489929						92	3	3	NaN	NaN	NaN	0.090258	1	9399	9399		37.231	22.218	1	12977			16769	1218	9747	9956	13263	13263					-0.05168237365001005
MGDPHQQTL	9	Unmodified						0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.737291	1025.46003	1.8184	0.00093419	-3.3623	-0.0017274	-1.5439	-0.00079317	513.7355278375587	14.381	0.19195	14.381	14.309	14.501	0	1314	46	0.8283535	0.027692616	0.8283535	336.24606		11.241028	0.0061091	-0.00027552	0.00075972	NaN	37.231	180	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20629			16770	1218	9747	9956							-0.05168237365001005
MGDPMEEAL	9	Unmodified	_MGDPMEEAL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4063449335	1	992.406345	991.399068	1.9941	0.0019789	-0.49795	-0.00049417	1.4961	0.0014848	992.4060015894459	24.96	0.14481	24.96	24.888	25.033	0	324	49	1.42687	0.028506875	1.42687	289.73398	0	5.7884827						183	7	3	NaN	NaN	NaN	0.25448	1	8251	8251		21.835	6.6596	1	17030			16771	1103	9748	9957	13264	13264					-0.09697510459477598
MGDPMEEAL	9	Unmodified	_MGDPMEEAL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4063449335	1	992.406345	991.399068	1.6973	0.0016844	0.4588	0.00045531	2.1561	0.0021397	992.4068290072304	24.96	0.1689	24.948	24.875	25.044	-0.012394	321	52	1.4286518	0.03028369	1.4271324	290.0958	0	6.149292						181	8	3	NaN	NaN	NaN	0.39244	1	8081	8081		14.042	1.4537	1	15138			16772	1103	9748	9957	13265	13265					-0.09697510459477598
MGDPMEEAL	9	Oxidation (M)	_MGDPM(Oxidation (M))EEAL_		M(0.002)GDPM(0.998)EEAL		M(-28)GDPM(28)EEAL	0	0	1		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4012595556001	1	1008.40126	1007.39398	1.9337	0.0019499	0.77403	0.00078053	2.7077	0.0027304	1008.4027569849945	19.755	0.096292	19.741	19.717	19.813	-0.014141	306	40	1.4375578	0.023148298	1.4360384	291.84064	0	4.6993713						93	5	2	NaN	NaN	NaN	0.04947	1	8686	8686		47.136	28.017	2	6363.9			16773	1103	9748	9958	13266	13266		119			-0.1094181432208643
MGEAGGDG	8	Unmodified	_MGEAGGDG_					0	0	0		PSD2|p.A211E|1|0.08|ENSG00000146005|chr5:139813569-139813569|C/A|missense_variant	PSD2|p.A211E|1|0.08|ENSG00000146005|chr5:139813569-139813569|C/A|missense_variant	PSD2|p.A211E|1|0.08|ENSG00000146005|chr5:139813569-139813569|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.2508305695001	1	693.250831	692.243554	2.4606	0.0017058	0.12756	8.843E-05	2.5882	0.0017943	693.2513808009438	25.998	0.69987	25.998	25.781	26.481	0	750	175	1.1719203	0.105050564	1.1719203	239.37039	0	21.457092						2224	30	4	NaN	NaN	NaN	0.84876	1	3082	3082		0.39566	0	1	460910			16774	8105	9749	9959	13267	13267					-0.11487793198728014
MGETTTWG	8	Unmodified	_MGETTTWG_					0	0	0		tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	tr|U7SP80|U7SP80_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01760PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.68673557244995	2	441.686736	881.358918	0.97165	0.00042916	3.884	0.0017155	4.8556	0.0021447	441.6884414707641	14.812	0.12013	14.8	14.752	14.872	-0.011738	1407	52	0.77102906	0.03149736	0.7695096	313.65363	0	12.81308						102	6	2	NaN	NaN	NaN	0.76633	1	5694	5694		13.737	1.1492	1	8662.9			16775	13796	9750	9960	13268	13268					-0.08650689067746953
MGGALAVL	8	Unmodified	_MGGALAVL_					0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.4120226589001	1	731.412023	730.404746	1.5081	0.0011031	6.0887	0.0044533	7.5968	0.0055564	731.417722376365	54.596	0.096325	54.596	54.548	54.644	0	1008	34	1.0156195	0.020085573	1.0156195	207.2349	0	4.098419						98	5	3	NaN	NaN	NaN	0.84651	1	3760	3760		1.6704	0	1	7655.8	+		16776	10238	9751	9961	13269	13269					0.028760009051666202
MGGALAVL	8	Unmodified						0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	731.412023	730.404746	1.5081	0.0011031	6.0887	0.0044533	7.5968	0.0055564	731.417722376365	54.596	0.096325	54.596	54.548	54.644	0	1008	34	1.0156195	0.020085573	1.0156195	207.2349		4.098419	0.001345	-4.7705E-05	0.00075972	NaN	1.6704	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7655.8	+		16777	10238	9751	9961							0.028760009051666202
MGGGFGGK	8	Unmodified	_MGGGFGGK_					0	0	0		XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant;ENSG00000158125|ENST00000379416|XDH	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3290213110001	1	710.329021	709.321745	0.97254	0.00069082	8.2171	0.0058368	9.1896	0.0065276	710.334747872967	34.588	0.21703	34.587	34.515	34.732	-0.0006485	657	73	1.2279087	0.043274045	1.2263893	250.68913	0	8.834793						304	10	3	NaN	NaN	NaN	0.84876	1	3346	3346		0.39566	0	1	40778			16778	3980	9752	9962	13270	13270					-0.04454315822829358
MGGGKGAI	8	Unmodified	_MGGGKGAI_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	0.80689	0.00055704	3.8034	0.0026257	4.6103	0.0031828	690.3626948214594	38.924	0.1922	38.924	38.828	39.02	0	750	76	1.1719203	0.045205235	1.1719203	239.38985	0	9.234116						191	9	2	NaN	NaN	NaN	0.84887	1	3012	3012		0.32989	0	1	15518			16779	4514	9753	9963	13271	13271					-0.004057427887460108
MGGGKGAI	8	Unmodified	_MGGGKGAI_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.3352	0.0009218	4.6992	0.0032441	6.0344	0.0041659	690.363419309666	43.345	0.2637	43.345	43.225	43.489	0	741	43	1.1773466	0.02531898	1.1773466	240.49829	0	5.171936						170	12	2	NaN	NaN	NaN	0.84727	1	3023	3023		1.2418	0	1	15049			16780	4514	9753	9963	13272	13272					-0.004057427887460108
MGGGKGAI	8	Unmodified	_MGGGKGAI_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.1439	0.0007897	4.7545	0.0032823	5.8984	0.004072	690.3637566918335	36.806	0.19241	36.807	36.735	36.928	0.0016785	687	100	1.2098682	0.059613466	1.2083488	247.14151	0	12.177322						262	9	2	NaN	NaN	NaN	0.84692	1	2950	2950		1.4396	0	1	24344			16781	4514	9753	9963	13273	13273					-0.004057427887460108
MGGGKGAI	8	Unmodified	_MGGGKGAI_					0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.5101	0.0010425	4.4091	0.0030439	5.9192	0.0040864	690.3632342055756	36.324	0.21672	36.325	36.253	36.47	0.0011024	753	82	1.1701111	0.04884243	1.1685916	239.02028	0	9.977127						189	10	2	NaN	NaN	NaN	0.84727	1	2951	2951		1.2418	0.91196	1	13557			16782	4514	9753	9963	13274	13274					-0.004057427887460108
MGGGKGAI	8	Unmodified						0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.513	0.0010445	3.8709	0.0026723	5.3839	0.0037169	690.3633836568986	36.326	0.072258	36.326	36.302	36.374	0	753	70	1.1701111	0.041620016	1.1701111	239.02028		8.50177	0.00029732	-0.00018725	0.00075972	NaN	1.2418	103	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8465.1			16783	4514	9753	9963							-0.004057427887460108
MGGGKGAI	8	Unmodified						0	0	0		ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	ENSG00000166902|ENST00000300151|MRPL16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.5311	0.001057	4.2676	0.0029462	5.7988	0.0040032	690.3632429306124	36.808	0.14431	36.808	36.688	36.832	0	690	109	1.2080631	0.0650363	1.2080631	246.77278		13.285049	0.00022817	-0.00015399	-0.00014284	NaN	1.4396	196	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20530			16784	4514	9753	9963							-0.004057427887460108
MGGGTGTG	8	Unmodified	_MGGGTGTG_					0	0	0		tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.2610013253001	1	637.261001	636.253725	2.377	0.0015147	1.4381	0.00091643	3.815	0.0024312	637.2620128129201	25.998	0.19309	25.987	25.842	26.035	-0.011137	786	58	1.1501974	0.034418583	1.148678	235.33388	0	7.042145						190	9	2	NaN	NaN	NaN	0.84887	1	1552	1552		0.32989	0	1	25918			16785	13986	9754	9964	13275	13275					-0.07895185473489619
MGGKAGVA	8	Unmodified	_MGGKAGVA_					0	0	0		ENST00000465878.6_2_16:57792547-57792799:-|nuORF	ENST00000465878.6_2_16:57792547-57792799:-|nuORF	ENST00000465878.6_2_16:57792547-57792799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.725	0.0011909	4.6048	0.003179	6.3299	0.0043699	690.3635875572944	29.667	0.21722	29.667	29.667	29.884	0	777	94	1.1556307	0.056090474	1.1556307	236.06235	0	11.457672						182	10	2	NaN	NaN	NaN	0.84727	1	3024	3024		1.2418	0	1	12387			16786	7109	9755	9965	13276	13276					-0.004057427887460108
MGGPGQPG	8	Unmodified	_MGGPGQPG_					0	0	0			REV__ENSG00000169047|ENST00000305123|IRS1	REV__ENSG00000169047|ENST00000305123|IRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.65778116775	2	350.657781	699.301009	1.446	0.00050705	5.3425	0.0018734	6.7885	0.0023804	350.659494694453	30.631	0.14474	30.625	30.625	30.77	-0.0057545	1497	85	0.71537006	0.05206698	0.7138506	292.17032	0	21.265137						123	7	2	NaN	NaN	NaN	0.84207	1	3141	3141		3.5732	0.41988	1	11432	+		16787	10532	9756	9966	13277	13277					-0.06066906202499922
MGGPGQPG	8	Unmodified						0	0	0			REV__ENSG00000169047|ENST00000305123|IRS1	REV__ENSG00000169047|ENST00000305123|IRS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	350.657781	699.301009	1.2303	0.0004314	7.3029	0.0025608	8.5331	0.0029922	350.66083924288614	30.656	0.096548	30.656	30.608	30.704	0	1497	46	0.71537006	0.027876318	0.71537006	292.1703		11.385193	0.015469	0.00036551	0.00075972	NaN	3.5732	113	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14010	+		16788	10532	9756	9966							-0.06066906202499922
MGGPGQPG	8	Unmodified						0	0	0			REV__ENSG00000169047|ENST00000305123|IRS1	REV__ENSG00000169047|ENST00000305123|IRS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	350.657781	699.301009	1.446	0.00050705	5.3425	0.0018734	6.7885	0.0023804	350.659494694453	30.631	0.14474	30.625	30.625	30.77	-0.0057545	1497	85	0.71537006	0.05206698	0.7138506	292.17032		21.265137	-0.015469	-0.0010093	-0.00075972	NaN	3.5732	123	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11432	+		16789	10532	9756	9966							-0.06066906202499922
MGHLDVVAL	9	Unmodified	_MGHLDVVAL_					0	0	0		nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44;nc|ENSG00000065413|Q8N8A2-5|ANKRD44;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;ANKRD44|p.F627Cfs*17|1|0.27|ENSG00000065413|chr2:197013554-197013555|AA/-|frameshift_variant	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.75749521234997	2	477.757495	953.500437	1.3759	0.00065734	-1.7975	-0.00085876	-0.42159	-0.00020142	477.75653258673543	24.068	0.072334	24.068	24.019	24.092	0	1314	55	0.8283535	0.03324014	0.8283535	336.58194	0	13.506348						73	4	2	NaN	NaN	NaN	0.36492	1	7168	7168		15.175	1.1338	1	7211.7			16790	685	9757	9967	13278	13278					0.021827290253895626
MGHLDVVAL	9	Unmodified						0	0	0		nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44;nc|ENSG00000065413|Q8N8A2-5|ANKRD44;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;ANKRD44|p.F627Cfs*17|1|0.27|ENSG00000065413|chr2:197013554-197013555|AA/-|frameshift_variant	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	477.757495	953.500437	1.4714	0.00070298	-2.8258	-0.0013501	-1.3544	-0.00064708	477.756579599655	24.092	0.07242	24.079	24.055	24.127	-0.012749	1314	58	0.8283535	0.035084903	0.8268341	336.58194		14.25592	0.0055878	-0.00048729	-0.00075972	NaN	15.175	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8353.5			16791	685	9757	9967							0.021827290253895626
MGKAGAPG	8	Unmodified	_MGKAGAPG_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3446713752	1	688.344671	687.337395	1.7728	0.0012203	4.4716	0.003078	6.2444	0.0042983	688.3483278217595	29.594	0.16895	29.594	29.546	29.715	0	738	55	1.179155	0.032542586	1.179155	240.88144	0	6.647888						127	8	2	NaN	NaN	NaN	0.84887	1	2978	2978		0.32989	0	1	7823.9	+		16792	9359	9758	9968	13279	13279					-0.01878029305794371
MGKAGAPG	8	Unmodified						0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	688.344671	687.337395	1.7728	0.0012203	4.4716	0.003078	6.2444	0.0042983	688.3483278217595	29.594	0.16895	29.594	29.546	29.715	0	738	55	1.179155	0.032542586	1.179155	240.88144		6.647888	0.0039562	-0.00016879	-0.00014438	NaN	0.32989	127	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7823.9	+		16793	9359	9758	9968							-0.01878029305794371
MGKFFGLL	8	Unmodified	_MGKFFGLL_					0	0	0			REV__ENST00000531791.1_1_11:65146834-65147158:-|nuORF	REV__ENST00000531791.1_1_11:65146834-65147158:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5011720172002	1	912.501172	911.493896	1.3446	0.0012269	4.8548	0.00443	6.1994	0.0056569	912.5048841301913	41.546	0.024029	41.546	41.546	41.57	0	399	40	1.382264	0.023222327	1.382264	281.01364	0	4.7210693						44	2	2	NaN	NaN	NaN	0.84692	1	6256	6256		1.4396	0	1	3444.9	+		16794	10232	9759	9969	13280	13280					0.03460835864689216
MGKGAGLG	8	Unmodified	_MGKGAGLG_					0	0	0			REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394002	1	690.360321	689.353045	1.0239	0.00070686	3.6701	0.0025337	4.694	0.0032405	690.3639633653225	28.145	0.19309	28.137	28.016	28.209	-0.0089798	735	106	1.1809633	0.06328726	1.1794438	241.23706	0	12.927795						260	9	2	NaN	NaN	NaN	0.84887	1	2934	2934		0.32989	0	1	18603	+		16795	12677	9760	9970	13281	13281					-0.004057427887346421
MGKGAGLG	8	Unmodified	_MGKGAGLG_					0	0	0			REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394002	1	690.360321	689.353045	1.1151	0.00076982	4.064	0.0028056	5.1791	0.0035754	690.3630861574866	29.424	0.19302	29.417	29.344	29.537	-0.0077209	756	40	1.1683017	0.023524284	1.1667823	238.65068	0	4.8053436						128	9	2	NaN	NaN	NaN	0.84876	1	2939	2939		0.39566	0	1	11046	+		16796	12677	9760	9970	13282	13282					-0.004057427887346421
MGKGAGLG	8	Unmodified						0	0	0			REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	REV__ENST00000536254.6_1_19:37178536-37180370:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	1.1151	0.00076982	4.064	0.0028056	5.1791	0.0035754	690.3630861574866	29.424	0.19302	29.417	29.344	29.537	-0.0077209	756	40	1.1683017	0.023524284	1.1667823	238.65068		4.8053436	-0.0042494	0.00068398	0.00014506	NaN	0.39566	128	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11046	+		16797	12677	9760	9970							-0.004057427887346421
MGKGGAGG	8	Unmodified	_MGKGGAGG_					0	0	0			REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.6524988246	2	317.652499	633.290445	1.2338	0.00039193	8.4256	0.0026764	9.6594	0.0030683	317.6560547393548	42.027	0.047901	42.027	42.027	42.075	0	1536	49	0.69119483	0.029771924	0.69119483	282.8594	0	12.183655						69	3	2	NaN	NaN	NaN	0.84887	1	1556	1556		0.32989	0	1	5083.1	+		16798	9690	9761	9971	13283	13283					-0.040868888569320916
MGKVGAGG	8	Unmodified	_MGKVGAGG_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3446713752002	1	676.344671	675.337395	2.4365	0.0016479	0.71412	0.00048299	3.1506	0.0021309	676.3455763592871	27.856	0.048281	27.846	27.798	27.846	-0.009552	1092	25	0.9644182	0.014647901	0.96289873	197.08269	0	2.9933472						32	3	2	NaN	NaN	NaN	0.84945	1	2644	2644		0	0	1	1510.2			16799	1663	9762	9972	13284	13284					-0.013260293057783201
MGKVGAGG	8	Unmodified	_MGKVGAGG_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3446713752002	1	676.344671	675.337395	1.5445	0.0010446	3.9395	0.0026644	5.484	0.0037091	676.3476700733455	28.58	0.024117	28.572	28.572	28.596	-0.0083485	720	55	1.1900014	0.03253901	1.1884819	243.18149	0	6.649475						46	2	2	NaN	NaN	NaN	0.84945	1	2645	2645		0	0	1	3331.2			16800	1663	9762	9972	13285	13285					-0.013260293057783201
MGMGRGAG	8	Unmodified	_MGMGRGAG_					0	0	0		ENST00000557608.1_1_15:93609480-93616277:-|nuORF;ENST00000556658.1_1_15:93609480-93616856:-|nuORF;nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	ENST00000557608.1_1_15:93609480-93616277:-|nuORF	ENST00000557608.1_1_15:93609480-93616277:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.6650832711	2	368.665083	735.315614	1.8397	0.00067825	-6.2866	-0.0023176	-4.4469	-0.0016394	368.6631529428242	54.524	0.04818	54.524	54.5	54.548	0	1503	34	0.711653	0.02044487	0.711653	290.3795	0	8.342224						57	3	3	NaN	NaN	NaN	0.84692	1	3830	3830		1.4396	0	1	3049.6			16801	5254	9763	9973	13286	13286					-0.0626315732600915
MGNGFAGC	8	Unmodified	_MGNGFAGC_					0	0	0		ENST00000498792.1_1_3:120025975-120026458:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	ENST00000498792.1_1_3:120025975-120026458:+|nuORF	ENST00000498792.1_1_3:120025975-120026458:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.2803565589	1	756.280357	755.27308	1.589	0.0012017	-4.9768	-0.0037639	-3.3878	-0.0025621	756.2769092884748	28.532	0.096548	28.532	28.508	28.605	0	609	61	1.2567334	0.03601551	1.2567334	256.27814	0	7.344406						131	5	2	NaN	NaN	NaN	0.84692	1	4154	4154		1.4396	0	1	9989.9			16802	1505	9764	9974	13287	13287					-0.11434552454238656
MGNPGGVG	8	Unmodified	_MGNPGGVG_					0	0	0		nc|ENSG00000243449|Q5BLP8-2|NICOL1	nc|ENSG00000243449|Q5BLP8-2|NICOL1	nc|ENSG00000243449|Q5BLP8-2|NICOL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3082858689002	1	688.308286	687.301009	1.71	0.001177	-8.954	-0.0061631	-7.244	-0.0049861	688.3006321456564	24.381	0.07242	24.368	24.296	24.368	-0.012749	1083	58	0.9699114	0.03478682	0.96839195	198.13676	0	7.106369						66	4	2	NaN	NaN	NaN	0.84727	1	2894	2894		1.2418	0.84618	1	5542.3			16803	8047	9765	9975	13288	13288					-0.0551490620249524
MGPFVPFIMR	10	Unmodified	_MGPFVPFIMR_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8117475083	2	597.811748	1193.60894	0.60434	0.00036128	-8.6418	-0.0051662	-8.0374	-0.0048049	597.8079509570283	33.262	0.04826	33.262	33.238	33.287	0	1191	49	0.90387505	0.029416084	0.90387505	366.21646	0	11.918304						57	3	2	NaN	NaN	NaN	0.77513	1	16260	16260		1.7022	0.19679	1	5806.4			16804	2053	9766	9976	13289	13289					0.019881970041524255
MGQVLETLQ	9	Unmodified	_MGQVLETLQ_					0	0	0			REV__ENST00000227752.7_1_11:117870452-117870800:+|nuORF	REV__ENST00000227752.7_1_11:117870452-117870800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5237579528001	1	1018.52376	1017.51648	1.5911	0.0016206	0.84702	0.00086271	2.4381	0.0024833	1018.5271086814821	28.845	0.14477	28.837	28.74	28.885	-0.0083504	213	61	1.4926696	0.035490036	1.4911501	302.98828	0	7.2039185						138	7	2	NaN	NaN	NaN	0.31737	1	9094	9094		17.799	0	1	13247	+		16805	11476	9767	9977	13290	13290					0.008423904716437391
MGSSCSGG	8	Unmodified	_MGSSCSGG_					0	0	0		ENST00000164640.8_1_X:153068045-153068288:-|nuORF	ENST00000164640.8_1_X:153068045-153068288:-|nuORF	ENST00000164640.8_1_X:153068045-153068288:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.2279866374001	1	685.227987	684.22071	2.3327	0.0015984	-4.7084	-0.0032263	-2.3757	-0.0016279	685.2250277736148	25.998	0.21717	25.998	25.805	26.022	0	759	97	1.1664921	0.05791533	1.1664921	238.31587	0	11.832184						292	10	2	NaN	NaN	NaN	0.84876	1	2920	2920		0.39566	0	1	33705			16806	6217	9768	9978	13291	13291					-0.13403135587850556
MGTDPEPAM	9	Oxidation (M)	_MGTDPEPAM(Oxidation (M))_		MGTDPEPAM(1)		M(-42)GTDPEPAM(42)	0	0	1		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL-WDR70|1|fusion;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.3750448051001	1	964.375045	963.367768	1.5256	0.0014712	-2.2688	-0.002188	-0.74321	-0.00071673	964.3725332027827	14.933	0.072073	14.933	14.933	15.005	0	342	40	1.4161754	0.023177862	1.4161754	287.6771	0	4.708252						59	4	2	NaN	NaN	NaN	0.062072	1	7415	7415		41.785	19.658	2	4264			16807	4305	9769	9979	13292	13292		463			-0.11538083493564955
MGTYLSESQVN	11	Unmodified	_MGTYLSESQVN_					0	0	0		nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38	nc|nan|Q8TB03-2|CXorf38	nc|nan|Q8TB03-2|CXorf38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7793528664502	2	614.779353	1227.54415	0.76024	0.00046738	-0.40463	-0.00024876	0.35561	0.00021862	614.779828120805	24.357	0.24127	24.357	24.261	24.502	0	1164	73	0.9204082	0.044066966	0.9204082	372.7972	0	17.848663						317	11	4	NaN	NaN	NaN	0.66717	1	17174	17174		9.6116	1.3668	1	58010			16808	5435	9770	9980	13293	13293					-0.06051751058771515
MGVGVAGG	8	Unmodified	_MGVGVAGG_					0	0	0		ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3181222737	1	647.318122	646.310846	1.5393	0.00099643	-3.1596	-0.0020453	-1.6203	-0.0010488	647.3156525453738	28.121	0.096577	28.112	28.112	28.209	-0.0089779	783	55	1.1520087	0.032598257	1.1504892	235.6274	0	6.6675262						89	5	2	NaN	NaN	NaN	0.84651	1	1853	1853		1.6704	0	1	6567.8			16809	3395	9771	9981	13294	13294					-0.026457181971181853
MHAKNGGG	8	Unmodified	_MHAKNGGG_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.18195475580006	2	386.181955	770.349357	1.7359	0.00067039	2.7791	0.0010732	4.515	0.0017436	386.1831723198148	18.94	0.16798	18.94	18.892	19.06	0	1398	79	0.77658504	0.048143744	0.77658504	316.61084	0	19.628021						175	8	2	NaN	NaN	NaN	0.84207	1	4355	4355		3.5732	0.41988	1	22525			16810	5984	9772	9982	13295	13295					-0.04500412562583733
MHAKNGGG	8	Unmodified	_MHAKNGGG_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.18195475580006	2	386.181955	770.349357	1.558	0.00060169	4.4862	0.0017325	6.0442	0.0023342	386.1837329400742	19.058	0.14415	19.044	18.996	19.14	-0.014059	1404	73	0.77288127	0.04443556	0.7713618	315.1008	0	18.11621						178	7	2	NaN	NaN	NaN	0.84207	1	4284	4284		3.5732	0	1	18490			16811	5984	9772	9982	13296	13296					-0.04500412562583733
MHDSTPCC	8	Unmodified	_MHDSTPCC_					0	0	0		ENST00000336520.7_1_1:228295424-228295535:-|nuORF	ENST00000336520.7_1_1:228295424-228295535:-|nuORF	ENST00000336520.7_1_1:228295424-228295535:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.2950203450999	1	893.29502	892.287744	1.2054	0.0010768	-2.3831	-0.0021288	-1.1777	-0.001052	893.2926110037831	35.023	0.048252	35.023	34.999	35.048	0	399	46	1.382264	0.026803493	1.382264	281.10364	0	5.450897						57	3	2	NaN	NaN	NaN	0.84887	1	5952	5952		0.32989	0	1	3350.5			16812	6524	9773	9983	13297	13297					-0.1627084836842414
MHNGKLAT	8	Unmodified	_MHNGKLAT_					0	0	0		ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.22636225945	2	436.226362	870.438172	0.38962	0.00016996	5.7561	0.0025109	6.1457	0.0026809	436.2293385872657	35.529	0.19297	35.529	35.481	35.674	0.00053024	1401	115	0.77473325	0.07037163	0.7732138	315.2211	0	28.632599						341	9	3	NaN	NaN	NaN	0.82797	1	5527	5527		5.4659	2.3125	1	54412			16813	1096	9774	9984	13298	13298					-0.00222997322930496
MHRFYQSLTLP	11	Unmodified	_MHRFYQSLTLP_					0	0	0			REV__nc|ENSG00000188766|Q2MJR0-2|SPRED3	REV__nc|ENSG00000188766|Q2MJR0-2|SPRED3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.8582718894501	2	696.858272	1391.70199	1.5584	0.001086	3.9737	0.0027691	5.532	0.0038551	696.8609115688737	28.146	0.048262	28.146	28.122	28.17	0	1062	49	0.9827221	0.029260993	0.9827221	397.51398	0	11.836151						57	3	2	NaN	NaN	NaN	0.76654	1	19999	19999		2.5994	0.26131	1	5065.7	+		16814	13202	9775	9985	13299	13299					0.021807929911119572
MIAFHDPEL	9	Unmodified	_MIAFHDPEL_					0	0	0		ENST00000510927.5_1_4:106967729-107168455:-|nuORF;TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.76023486655	2	536.760235	1071.50592	1.7952	0.00096357	0.49938	0.00026805	2.2945	0.0012316	536.7606329935923	23.971	0.16883	23.971	23.899	24.068	0	1233	82	0.87812483	0.049728274	0.87812483	356.2463	0	20.174255						225	8	3	NaN	NaN	NaN	0.062072	1	11623	11623		41.785	15.053	1	39236			16815	3511	9776	9986	13300	13300					-0.026975921827897764
MIAFHDPEL	9	Unmodified	_MIAFHDPEL_					0	0	0		ENST00000510927.5_1_4:106967729-107168455:-|nuORF;TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.76023486655	2	536.760235	1071.50592	1.2471	0.00066941	0.61707	0.00033122	1.8642	0.0010006	536.7605449709706	23.995	0.14478	23.982	23.934	24.079	-0.013048	1233	82	0.87812483	0.049728274	0.8766054	356.2463	0	20.174255						246	7	4	NaN	NaN	NaN	0.074859	1	11322	11322		39.459	18.903	1	35495			16816	3511	9776	9986	13301	13301					-0.026975921827897764
MIANDVHTL	9	Unmodified	_MIANDVHTL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.25785935310006	2	507.257859	1012.50117	2.2078	0.0011199	-1.8336	-0.00093013	0.37418	0.00018981	507.25710139674084	18.82	0.16803	18.82	18.772	18.94	0	1248	76	0.8689189	0.046069622	0.8689189	352.7722	0	18.703796						210	8	4	NaN	NaN	NaN	0.042816	1	9074	9074		49.961	23.23	1	36056			16817	1228	9777	9987	13302	13302					-0.004584763255365942
MIANDVHTL	9	Unmodified	_MIANDVHTL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.25785935310006	2	507.257859	1012.50117	1.4827	0.00075212	0.1358	6.8884E-05	1.6185	0.00082101	507.25854004445597	18.842	0.096071	18.828	18.78	18.876	-0.014059	1251	52	0.8670771	0.031313777	0.8655577	352.0244	0	12.713043						193	5	4	NaN	NaN	NaN	0.11656	1	8899	8899		33.425	10.091	1	38774			16818	1228	9777	9987	13303	13303					-0.004584763255365942
MIANDVHTL	9	Oxidation (M)	_M(Oxidation (M))IANDVHTL_		M(1)IANDVHTL		M(40)IANDVHTL	0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2553166641501	2	515.255317	1028.49608	1.5252	0.00078587	-0.58766	-0.0003028	0.93753	0.00048307	515.2552502527233	17.09	0.12009	17.077	17.053	17.173	-0.013294	1254	82	0.8652351	0.049765885	0.86371565	351.20334	0	20.200226						197	6	3	NaN	NaN	NaN	0.070055	1	9512	9512		40.154	20.869	1	27050			16819	1228	9777	9988	13304	13304		132			-0.01702780188156794
MIANDVHTL	9	Oxidation (M)						0	0	1		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.255317	1028.49608	2.1174	0.001091	-0.30397	-0.00015662	1.8135	0.0009344	515.255390616795	17.069	0.14408	17.069	17.045	17.189	0	1257	64	0.86339295	0.038698435	0.86339295	350.4556		15.707886	-0.0036524	0.00015859	-0.00016137	NaN	40.154	214	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26136			16820	1228	9777	9988				132			-0.01702780188156794
MICIGHGF	8	Unmodified	_MICIGHGF_					0	0	0			REV__TENM1|p.T606I|1|0.72|ENSG00000009694|chrX:124645202-124645202|G/A|missense_variant	REV__TENM1|p.T606I|1|0.72|ENSG00000009694|chrX:124645202-124645202|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.20658394505006	2	439.206584	876.398615	1.2206	0.00053608	-5.215	-0.0022905	-3.9945	-0.0017544	439.20329738053385	22.477	0.048082	22.477	22.429	22.477	0	1362	61	0.79879075	0.036973476	0.79879075	324.97528	0	15.042084						67	3	2	NaN	NaN	NaN	0.81214	1	5744	5744		7.5902	0.72703	1	7833	+		16821	13368	9778	9989	13305	13305					-0.044528405980031494
MIDDWTWCKE	10	Unmodified	_MIDDWTWCKE_					0	0	0			REV__ENSG00000145388|ENST00000388822|METTL14	REV__ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.7782986214501	2	663.778299	1325.54204	2.2388	0.001486	1.5964	0.0010597	3.8352	0.0025457	663.7796223641295	13.733	0.14417	13.733	13.637	13.781	0	1158	49	0.92408	0.02937162	0.92408	373.9766	0	11.886749						139	7	3	NaN	NaN	NaN	0.5626	1	19175	19175		16.858	4.8096	1	11819	+		16822	9927	9779	9990	13306	13306					-0.10770503068238213
MIDDWTWCKE	10	Unmodified	_MIDDWTWCKE_					0	0	0			REV__ENSG00000145388|ENST00000388822|METTL14	REV__ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.85462456983333	3	442.854625	1325.54204	1.1241	0.00049783	1.3035	0.00057726	2.4276	0.0010751	442.8554055908352	13.709	0.26369	13.699	13.555	13.818	-0.010672	1476	106	0.72837335	0.064924955	0.7268539	442.15723	0	39.412537						690	12	4	NaN	NaN	NaN	0.66626	1	18319	18319		5.6972	1.1539	1	71376	+		16823	9927	9779	9990	13307	13307					-0.10770503068238213
MIDDWTWCKE	10	Unmodified						0	0	0			REV__ENSG00000145388|ENST00000388822|METTL14	REV__ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	442.854625	1325.54204	1.9072	0.00084461	0.46533	0.00020607	2.3725	0.0010507	442.8549811441102	13.709	0.31229	13.709	13.565	13.877	0	1476	103	0.72837335	0.06306654	0.72837335	442.15723		38.284393	0.0051071	-0.0004177	0.00075972	NaN	5.6972	728	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75026	+		16824	9927	9779	9990							-0.10770503068238213
MIDDWTWCKE	10	Unmodified						0	0	0			REV__ENSG00000145388|ENST00000388822|METTL14	REV__ENSG00000145388|ENST00000388822|METTL14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	442.854625	1325.54204	1.1241	0.00049783	1.3035	0.00057726	2.4276	0.0010751	442.8554055908352	13.709	0.26369	13.699	13.555	13.818	-0.010672	1476	106	0.72837335	0.064924955	0.7268539	442.15723		39.412537	-0.0051071	0.00069585	-0.00075972	NaN	5.6972	690	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71376	+		16825	9927	9779	9990							-0.10770503068238213
MIDFARYW	8	Unmodified	_MIDFARYW_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2629447310001	2	551.262945	1100.51134	1.5067	0.00083061	2.5073	0.0013822	4.0141	0.0022128	551.263764442084	19.756	0.072079	19.756	19.732	19.804	0	1242	58	0.87260187	0.03499019	0.87260187	353.88727	0	14.190399						92	4	3	NaN	NaN	NaN	0.78967	1	12857	12857		10.605	2.3147	1	11791			16826	1174	9780	9991	13308	13308					-0.0348986860030891
MIDSFEEVF	9	Unmodified	_MIDSFEEVF_					0	0	0		nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	nc|ENSG00000100364|Q6ICG6-3|KIAA0930	nc|ENSG00000100364|Q6ICG6-3|KIAA0930	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.4917891224	1	1116.49179	1115.48451	1.1327	0.0012647	2.5778	0.0028781	3.7105	0.0041427	1116.4937379525254	31.259	0.096512	31.259	31.235	31.332	0	90	70	1.5652816	0.04064727	1.5652816	317.354	0	8.241089						179	5	3	NaN	NaN	NaN	0.094712	1	13484	13484		36.586	5.0254	1	17047			16827	1236	9781	9992	13309	13309					-0.06861022002158279
MIEEGELIL	9	Unmodified	_MIEEGELIL_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5438246929002	1	1046.54382	1045.53655	1.9582	0.0020493	-0.65595	-0.00068648	1.3022	0.0013628	1046.5445093516155	29.787	0.12067	29.787	29.739	29.86	0	153	64	1.5281296	0.037195444	1.5281296	310.0749	0	7.547394						146	6	2	NaN	NaN	NaN	0.023074	1	10450	10450		68.108	28.65	1	18160			16828	4363	9782	9993	13310	13310					0.015601414116190426
MIEEGELIL	9	Unmodified	_MIEEGELIL_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5438246929002	1	1046.54382	1045.53655	1.2221	0.001279	-1.1452	-0.0011985	0.076873	8.0451E-05	1046.5426723928047	29.786	0.096512	29.779	29.731	29.828	-0.0070648	150	79	1.5299006	0.04606366	1.5283811	310.43427	0	9.346863						177	5	3	NaN	NaN	NaN	0.094712	1	10238	10238		36.586	11.625	1	17061			16829	4363	9782	9993	13311	13311					0.015601414116190426
MIEGLDVTII	10	Unmodified	_MIEGLDVTII_					0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.6016739228	1	1103.60167	1102.5944	1.2296	0.001357	-2.2964	-0.0025343	-1.0668	-0.0011774	1103.5988845591983	30.148	0.072403	30.142	30.118	30.19	-0.0064106	123	67	1.5458313	0.03891909	1.5443119	313.45535	0	7.891815						165	4	3	NaN	NaN	NaN	0.33935	1	12619	12619		26.115	0.36316	1	18700			16830	13956	9783	9994	13312	13312					0.047204033370235265
MIEGLDVTII	10	Unmodified						0	0	0		tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	tr|U7T2A1|U7T2A1_FUSNUDhaLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00636PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1103.60167	1102.5944	1.8642	0.0020573	-0.94251	-0.0010402	0.92166	0.0010171	1103.600193999995	30.173	0.09655	30.173	30.101	30.198	0	123	61	1.5458313	0.035384774	1.5458313	313.45535		7.1751404	0.015756	0.00036887	0.00075972	NaN	26.115	175	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19932			16831	13956	9783	9994							0.047204033370235265
MIELSFYWSLL	11	Unmodified	_MIELSFYWSLL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3597817356501	2	701.359782	1400.70501	0.62464	0.0004381	-9.9025	-0.0069452	-9.2778	-0.0065071	701.3519863264653	30.221	0.14479	30.214	30.142	30.287	-0.0064106	1068	55	0.97906286	0.032932818	0.9775434	396.00882	0	13.320618						177	7	2	NaN	NaN	NaN	0.2154	1	19122	19122		28.896	11.314	1	20937			16832	3422	9784	9995	13313	13313					0.02068623325271801
MIFEKSVV	8	Unmodified	_MIFEKSVV_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.76224623925003	2	476.762246	951.50994	1.2308	0.00058679	-9.8673	-0.0047043	-8.6365	-0.0041176	476.7574764220222	21.489	0.12055	21.475	21.45	21.571	-0.014006	1329	40	0.81912065	0.024015844	0.8176012	332.84033	0	9.758575						110	6	2	NaN	NaN	NaN	0.84756	1	6990	6990		1.072	0	1	15246			16833	5959	9785	9996	13314	13314					0.03224497310930019
MIFKYIDSL	9	Unmodified	_MIFKYIDSL_					0	0	0			REV__ENSG00000204612|ENST00000376708|FOXB2	REV__ENSG00000204612|ENST00000376708|FOXB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.3017355405001	2	565.301736	1128.58892	1.1481	0.000649	3.3402	0.0018882	4.4883	0.0025372	565.3047427727927	31.646	0.16896	31.646	31.573	31.742	0	1233	55	0.87812483	0.033121705	0.87812483	356.01752	0	13.428528						131	8	2	NaN	NaN	NaN	0.42773	1	14034	14034		12.588	1.9829	1	12446	+		16834	11247	9786	9997	13315	13315					0.029767245452148927
MIFTGLEVL	9	Unmodified	_MIFTGLEVL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5590808266	1	1022.55908	1021.5518	2.3585	0.0024117	0.056227	5.7495E-05	2.4147	0.0024692	1022.5591902024196	34.517	0.072407	34.517	34.493	34.565	0	159	58	1.5245869	0.033656597	1.5245869	309.45062	0	6.8313904						154	4	3	NaN	NaN	NaN	0.020004	1	9441	9441		71.993	24.953	1	13767			16835	3536	9787	9998	13316	13316					0.0418905299944754
MIFTGLEVL	9	Unmodified	_MIFTGLEVL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5590808266	1	1022.55908	1021.5518	1.4998	0.0015336	1.2819	0.0013108	2.7817	0.0028445	1022.5608899836265	34.516	0.096481	34.515	34.467	34.563	-0.0006485	156	58	1.5263584	0.033649445	1.5248389	309.81018	0	6.8299255						147	5	3	NaN	NaN	NaN	0.094712	1	9245	9245		36.586	11.625	1	12108			16836	3536	9787	9998	13317	13317					0.0418905299944754
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.77113390385	2	551.771134	1101.52771	1.7914	0.00098843	-2.1902	-0.0012085	-0.39884	-0.00022007	551.7699604369009	16.734	0.28785	16.734	16.566	16.854	0	1281	79	0.84864825	0.047909796	0.84864825	344.16888	0	19.42978						717	13	5	NaN	NaN	NaN	0.0047854	1	12899	12899		103.03	72.416	1	183950			16837	167	9788	9999	13318	13318					-0.018987874342428768
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.18318142476664	3	368.183181	1101.52771	2.078	0.00076508	-1.7923	-0.00065991	0.28566	0.00010518	368.1824709998455	16.734	0.35979	16.734	16.566	16.925	0	1479	73	0.72651637	0.044585228	0.72651637	441.9525	0	27.121979						560	16	4	NaN	NaN	NaN	0.078597	1	12900	12900		27.296	4.1786	1	189040			16838	167	9788	9999	13319	13319					-0.018987874342428768
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	368.18318142476664	3	368.183181	1101.52771	2.211	0.00081407	-1.7762	-0.00065395	0.4349	0.00016012	368.18273164315866	16.802	0.35952	16.789	16.621	16.981	-0.013294	1476	79	0.72837335	0.048300683	0.7268539	443.08218	0	29.382141						650	16	5	NaN	NaN	NaN	0.043119	1	12564	12564		36.235	18.265	1	193590			16839	167	9788	9999	13320	13320					-0.018987874342428768
MIHEPEPHI	9	Unmodified	_MIHEPEPHI_					0	0	0		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.77113390385	2	551.771134	1101.52771	1.9718	0.001088	-1.3549	-0.00074761	0.61689	0.00034038	551.7705561514612	16.778	0.35955	16.765	16.597	16.957	-0.013294	1281	85	0.84864825	0.05159515	0.8471288	344.16888	0	20.924377						792	16	5	NaN	NaN	NaN	0.0072287	1	12565	12565		98.041	51.001	1	203890			16840	167	9788	9999	13321	13321					-0.018987874342428768
MIHEPEPHI	9	Oxidation (M)	_M(Oxidation (M))IHEPEPHI_		M(1)IHEPEPHI		M(65)IHEPEPHI	0	0	1		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7685912149	2	559.768591	1117.52263	1.8686	0.001046	-0.22855	-0.00012793	1.64	0.00091803	559.7682370866704	15.702	0.2641	15.702	15.51	15.774	0	1236	184	0.876284	0.112288594	0.876284	355.3137	0	45.530518						732	12	2	NaN	NaN	NaN	0.025843	1	13575	13575		64.55	43.994	1	125070			16841	167	9788	10000	13322	13322		11			-0.03143091296851708
MIHEPEPHI	9	Oxidation (M)	_M(Oxidation (M))IHEPEPHI_		M(1)IHEPEPHI		M(100)IHEPEPHI	0	0	1		ENST00000449661.1_1_9:80834204-80834270:+|nuORF;CKS1B|p.L68Afs*50|1|0.3|ENSG00000173207|chr1:154978733-154978734|-/T|frameshift_variant;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B;ENSG00000123975|ENST00000314355|CKS2	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	ENST00000449661.1_1_9:80834204-80834270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7685912149	2	559.768591	1117.52263	1.9537	0.0010936	0.31429	0.00017593	2.268	0.0012695	559.7686884124967	15.724	0.19182	15.711	15.543	15.735	-0.012611	1239	157	0.87444305	0.09567481	0.8729236	354.5672	0	38.793976						541	9	2	NaN	NaN	NaN	0.0047854	1	13175	13175		103.03	64.108	1	84896			16842	167	9788	10000	13323	13323		11			-0.03143091296851708
MIHEVEHEM	9	Unmodified	_MIHEVEHEM_					0	0	0		ENST00000496105.1_1_3:113169108-113212968:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7520838709501	2	577.752084	1153.48961	1.4192	0.00081992	1.5503	0.00089571	2.9695	0.0017156	577.752982154048	14.645	0.16809	14.645	14.573	14.741	0	1197	43	0.9001988	0.025736272	0.9001988	364.8719	0	10.431519						94	7	2	NaN	NaN	NaN	0.12945	1	14907	14907		31.561	18.558	1	7542.1			16843	4245	9789	10001	13324	13324					-0.08099041411196595
MIHGIEPML	9	Unmodified	_MIHGIEPML_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7670056536501	2	520.767006	1039.51946	1.3415	0.00069859	-3.1592	-0.0016452	-1.8178	-0.00094663	520.7655853260263	24.406	0.09651	24.406	24.333	24.43	0	1305	67	0.83389086	0.040591657	0.83389086	338.43317	0	16.47406						177	5	3	NaN	NaN	NaN	0.11467	1	10188	10188		33.698	9.8479	1	66355			16844	616	9790	10002	13325	13325					0.0012794232482065127
MIHGIEPML	9	Unmodified	_MIHGIEPML_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.7670056536501	2	520.767006	1039.51946	1.4302	0.00074478	-5.4288	-0.0028272	-3.9987	-0.0020824	520.7644781741532	24.429	0.19304	24.417	24.344	24.537	-0.012749	1305	82	0.83389086	0.049830556	0.8323714	338.43317	0	20.223633						387	9	5	NaN	NaN	NaN	0.042649	1	9975	9975		50.033	29.08	1	84646			16845	616	9790	10002	13326	13326					0.0012794232482065127
MIHGIEPML	9	Oxidation (M)	_MIHGIEPM(Oxidation (M))L_		MIHGIEPM(1)L		M(-45)IHGIEPM(45)L	0	0	1		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7644629647001	2	528.764463	1055.51437	1.9502	0.0010312	-3.4764	-0.0018382	-1.5262	-0.00080699	528.763032314669	22.091	0.26525	22.091	21.97	22.236	0	1299	70	0.8375814	0.042416096	0.8375814	339.86362	0	17.21109						410	12	4	NaN	NaN	NaN	0.042649	1	10879	10879		50.033	26.698	2	102250			16846	616	9790	10003	13327	13327		64			-0.01116361537810917
MIHGIEPML	9	Oxidation (M)	_MIHGIEPM(Oxidation (M))L_		MIHGIEPM(1)L		M(-60)IHGIEPM(60)L	0	0	1		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7644629647001	2	528.764463	1055.51437	1.0348	0.00054718	-1.6798	-0.00088823	-0.64499	-0.00034105	528.7638461393684	22.115	0.21692	22.101	22.005	22.222	-0.013731	1296	94	0.8394264	0.05714482	0.83790696	340.61224	0	23.18753						481	10	4	NaN	NaN	NaN	0.02781	1	10650	10650		61.977	33.31	2	110490			16847	616	9790	10003	13328	13328		64			-0.01116361537810917
MIIDMVEVL	9	Unmodified	_MIIDMVEVL_					0	0	0			REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.78232136685	2	531.782321	1061.55009	0.86563	0.00046033	-7.0869	-0.0037687	-6.2213	-0.0033084	531.7780280871132	35.144	0.12067	35.144	35.096	35.217	0	1266	85	0.85786515	0.051606297	0.85786515	348.06863	0	20.93866						313	6	4	NaN	NaN	NaN	0.25448	1	11181	11181		21.835	4.036	1	32217	+		16848	8734	9791	10004	13329	13329					0.021776759191880046
MIIDMVEVL	9	Unmodified						0	0	0			REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.782321	1061.55009	0.86563	0.00046033	-7.0869	-0.0037687	-6.2213	-0.0033084	531.7780280871132	35.144	0.12067	35.144	35.096	35.217	0	1266	85	0.85786515	0.051606297	0.85786515	348.06863		20.93866	0.000753	4.5712E-05	0.00075972	NaN	21.835	313	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32217	+		16849	8734	9791	10004							0.021776759191880046
MIIEDETEF	9	Unmodified	_MIIEDETEF_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.4972684308	1	1126.49727	1125.48999	2.7704	0.0031208	-1.0823	-0.0012192	1.6881	0.0019016	1126.496497267779	26.288	0.16895	26.288	26.263	26.432	0	81	100	1.5705823	0.058326244	1.5705823	318.39407	0	11.824097						538	8	5	NaN	NaN	NaN	0.021105	1	13887	13887		70.6	28.815	1	118280			16850	3074	9792	10005	13330	13330					-0.06773343210352323
MIIEDETEF	9	Unmodified	_MIIEDETEF_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.4972684308	1	1126.49727	1125.48999	1.7425	0.0019629	0.16975	0.00019122	1.9123	0.0021542	1126.4981472943568	26.287	0.31367	26.276	26.204	26.517	-0.011137	81	106	1.5705823	0.061861157	1.5690628	318.39407	0	12.54071						687	14	4	NaN	NaN	NaN	1.096E-11	1	13461	13461		143.5	72.9	1	126460			16851	3074	9792	10005	13331	13331					-0.06773343210352323
MIIEDETEF	9	Oxidation (M)	_M(Oxidation (M))IIEDETEF_		M(1)IIEDETEF		M(120)IIEDETEF	0	0	1		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.4921830529	1	1142.49218	1141.48491	2.6425	0.0030191	-2.5741	-0.0029409	0.068442	7.8194E-05	1142.4894387615243	23.923	0.096447	23.923	23.875	23.971	0	108	88	1.5546752	0.051267266	1.5546752	315.1158	0	10.391327						304	5	4	NaN	NaN	NaN	0.00020136	1	14499	14499		116.74	13.71	1	53823			16852	3074	9792	10006	13332	13332		347			-0.08017647072961154
MIIEDPAAL	9	Unmodified	_MIIEDPAAL_					0	0	0		nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5070452561	1	972.507045	971.499769	1.6644	0.0016187	-0.77173	-0.00075051	0.89272	0.00086817	972.5054839862577	27.422	0.14486	27.422	27.374	27.519	0	255	76	1.4678029	0.044449806	1.4678029	298.12933	0	9.02832						176	7	2	NaN	NaN	NaN	0.03623	1	7652	7652		52.758	29.641	1	24666			16853	1959	9793	10007	13333	13333					0.012878895856829331
MIIEDPAAL	9	Unmodified	_MIIEDPAAL_					0	0	0		nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5070452561	1	972.507045	971.499769	1.1768	0.0011445	0.19097	0.00018572	1.3678	0.0013302	972.5060063128125	27.422	0.096535	27.411	27.387	27.484	-0.010126	252	76	1.4695803	0.044449806	1.4680609	298.49036	0	9.02832						158	5	3	NaN	NaN	NaN	0.062072	1	7506	7506		41.785	21.229	1	21236			16854	1959	9793	10007	13334	13334					0.012878895856829331
MIIRDFVL	8	Unmodified	_MIIRDFVL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.79133802970006	2	503.791338	1005.56812	1.8404	0.0009272	0.25608	0.00012901	2.0965	0.0010562	503.79022749514434	27.977	0.21716	27.977	27.857	28.074	0	1254	115	0.8652351	0.070090234	0.8652351	351.30905	0	28.458527						369	10	4	NaN	NaN	NaN	0.45636	1	8816	8816		33.425	12.87	1	60453			16855	2261	9794	10008	13335	13335					0.06556178956213898
MIIRDFVL	8	Unmodified	_MIIRDFVL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.79133802970006	2	503.791338	1005.56812	0.99111	0.00049931	1.2431	0.00062624	2.2342	0.0011256	503.7918547093488	28.001	0.16895	27.992	27.968	28.137	-0.0089798	1254	109	0.8652351	0.06638688	0.86371565	351.30905	0	26.954895						342	8	3	NaN	NaN	NaN	0.65644	1	8650	8650		21.771	2.6527	1	60658			16856	2261	9794	10008	13336	13336					0.06556178956213898
MIITEYNLL	9	Unmodified	_MIITEYNLL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2991928515501	2	555.299193	1108.58383	1.0898	0.00060517	-6.5277	-0.0036248	-5.4379	-0.0030196	555.7962153554114	26.722	0.14478	26.711	26.639	26.783	-0.010645	1233	85	0.87812483	0.05151713	0.8766054	356.0951	0	20.891113						191	7	2	NaN	NaN	NaN	0.29681	1	12857	12857		19.118	1.3193	1	21402			16857	3841	9795	10009	13337	13337					0.03388420682586002
MIKDETKN	8	Unmodified	_MIKDETKN_					0	0	0		tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.7498671455	2	489.749867	977.485181	1.0636	0.00052092	0.30346	0.00014862	1.3671	0.00066953	489.7499662720307	22.548	0.096472	22.535	22.535	22.631	-0.01354	1341	61	0.8117308	0.036945462	0.81021136	329.71262	0	15.006683						112	5	2	NaN	NaN	NaN	0.67765	1	7654	7654		20.449	0	1	14350			16858	13944	9796	10010	13338	13338					-0.004461825624616722
MIKTEVLI	8	Unmodified	_MIKTEVLI_					0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5641662045001	1	946.564166	945.55689	1.0113	0.00095726	-1.2114	-0.0011467	-0.20013	-0.00018944	946.5636363441585	34.951	0.072273	34.951	34.927	34.999	0	252	52	1.4695803	0.030216217	1.4695803	298.60486	0	6.1396484						101	4	2	NaN	NaN	NaN	0.65542	1	6975	6975		21.835	1.2795	1	10034	+		16859	13141	9797	10011	13339	13339					0.08193356862068413
MIKVYSFI	8	Unmodified	_MIKVYSFI_					0	0	0			REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.1893848171333	3	334.189385	999.546325	1.5596	0.0005212	0.90062	0.00030098	2.4602	0.00082218	334.1902264341728	14.549	0.04793	14.549	14.525	14.573	0	1482	40	0.72465914	0.024143755	0.72465914	441.37692	0	14.705536						42	3	2	NaN	NaN	NaN	0.81251	1	8577	8577		5.1889	1.2204	1	4043.7	+		16860	12404	9798	10012	13340	13340					0.046533742076235285
MIKVYSFI	8	Unmodified						0	0	0			REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	334.189385	999.546325	1.5596	0.0005212	0.90062	0.00030098	2.4602	0.00082218	334.1902264341728	14.549	0.04793	14.549	14.525	14.573	0	1482	40	0.72465914	0.024143755	0.72465914	441.37692		14.705536	-0.029754	-0.0028384	-0.00016889	NaN	5.1889	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043.7	+		16861	12404	9798	10012							0.046533742076235285
MIKVYSFI	8	Unmodified						0	0	0			REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	334.189385	999.546325	1.6382	0.00054745	5.1847	0.0017327	6.8229	0.0022801	334.19116500093804	14.62	0.11975	14.609	14.561	14.68	-0.011218	1479	43	0.72651637	0.025999546	0.7249969	442.50812		15.835876	0.029754	0.0014567	0.00016889	NaN	5.1889	93	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8495.3	+		16862	12404	9798	10012							0.046533742076235285
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.7780932687	2	539.778093	1077.54163	1.2411	0.00066992	-1.4676	-0.00079218	-0.2265	-0.00012226	539.7772549516445	33.094	0.16891	33.094	33.045	33.214	0	1266	73	0.85786515	0.044219613	0.85786515	348.00244	0	17.938171						395	8	5	NaN	NaN	NaN	0.0081087	1	11862	11862		96.245	57.328	1	84738			16863	2723	9799	10013	13341	13341					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5489100707998	1	1078.54891	1077.54163	0.88276	0.0009521	-0.33705	-0.00036353	0.5457	0.00058857	1078.548570579276	33.094	0.04826	33.094	33.069	33.118	0	651	223	1.2315145	0.13315797	1.2315145	249.79166	0	27.00882						321	3	3	NaN	NaN	NaN	0.023828	1	11863	11863		67.154	25.37	1	29771			16864	2723	9799	10013	13342	13342					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5489100707998	1	1078.54891	1077.54163	1.7091	0.0018433	0.64507	0.00069574	2.3541	0.0025391	1078.5495002653308	33.094	0.45855	33.094	32.997	33.456	0	81	379	1.5705823	0.22368443	1.5705823	318.56577	0	45.370575						2187	20	4	NaN	NaN	NaN	1.5841000000000002E-35	1	11864	11864		182.61	77.896	1	2728700			16865	2723	9799	10013	13343	13343					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5489100707998	1	1078.54891	1077.54163	0.97859	0.0010555	1.4014	0.0015115	2.38	0.002567	1078.551708849189	34.155	0.048218	34.155	34.131	34.179	0	69	82	1.5776473	0.047706246	1.5776473	319.99878	0	9.676422						136	3	2	NaN	NaN	NaN	0.032764	1	11865	11865		55.494	13.709	1	11652			16866	2723	9799	10013	13344	13344					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7780932687	2	539.778093	1077.54163	0.95606	0.00051606	-1.298	-0.00070064	-0.34196	-0.00018458	539.7775255549586	33.092	0.19299	33.09	33.042	33.235	-0.0024757	1263	79	0.85970795	0.047889054	0.8581885	348.75	0	19.426697						358	9	5	NaN	NaN	NaN	0.0047854	1	11554	11554		103.03	55.544	1	80205			16867	2723	9799	10013	13345	13345					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5489100707998	1	1078.54891	1077.54163	1.3745	0.0014824	0.085857	9.2601E-05	1.4603	0.001575	1078.5491591731313	33.068	0.048237	33.066	33.066	33.114	-0.0024796	648	244	1.2333171	0.14568412	1.2317977	250.15727	0	29.549545						316	3	3	NaN	NaN	NaN	0.026295	1	11555	11555		63.958	24.499	1	27480			16868	2723	9799	10013	13346	13346					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5489100707998	1	1078.54891	1077.54163	1.5243	0.0016441	0.47451	0.00051178	1.9989	0.0021559	1078.5498898054984	33.937	0.19308	33.936	33.887	34.08	-0.0012474	84	100	1.5688156	0.058326244	1.5672961	318.2074	0	11.830475						524	9	3	NaN	NaN	NaN	0.028349	1	11556	11556		61.271	11.438	1	111150			16869	2723	9799	10013	13347	13347					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5489100707998	1	1078.54891	1077.54163	2.5434	0.0027432	-0.25937	-0.00027975	2.284	0.0024634	1078.5489503605902	33.092	0.55482	33.09	32.969	33.524	-0.0024757	78	304	1.5723488	0.17908323	1.5708294	318.92407	0	36.323975						2277	24	4	NaN	NaN	NaN	3.9321E-26	1	11557	11557		174.97	85.447	1	2662700			16870	2723	9799	10013	13348	13348					0.005964452741864079
MILELDPTF	9	Unmodified	_MILELDPTF_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5489100707998	1	1078.54891	1077.54163	1.0674	0.0011513	1.48	0.0015963	2.5475	0.0027476	1078.5499841282292	42.624	0.14402	42.634	42.61	42.754	0.0097351	84	58	1.5688156	0.033571124	1.5672961	318.2074	0	6.8092957						152	7	2	NaN	NaN	NaN	0.0072287	1	11558	11558		98.041	42.547	1	14255			16871	2723	9799	10013	13349	13349					0.005964452741864079
MILELDPTF	9	Unmodified						0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1078.54891	1077.54163	0.92649	0.00099927	0.52862	0.00057014	1.4551	0.0015694	1078.5497128896634	33.89	0.31371	33.89	33.648	33.962	0	87	115	1.5670487	0.0671885	1.5670487	317.84903		13.628021	-0.022894	3.0254E-05	-0.00012373	NaN	61.271	623	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129490			16872	2723	9799	10013							0.005964452741864079
MILELDPTF	9	Unmodified						0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1078.54891	1077.54163	1.7143	0.001849	-3.5006	-0.0037756	-1.7863	-0.0019266	1078.5474772225377	34.299	0.096302	34.298	34.298	34.394	-0.0012474	78	79	1.5723488	0.045956492	1.5708294	318.92407		9.321472	0.071178	-0.0038302	-0.0034089	NaN	55.494	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8862.2			16873	2723	9799	10013							0.005964452741864079
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(71)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5438246928998	1	1094.54382	1093.53655	1.3124	0.0014365	-1.7374	-0.0019016	-0.42497	-0.00046515	1094.5415581376517	31.597	0.12072	31.597	31.549	31.67	0	81	79	1.5705823	0.045946717	1.5705823	318.50684	0	9.31778						176	6	2	NaN	NaN	NaN	0.021105	1	12548	12548		70.6	26.297	1	26062			16874	2723	9799	10014	13350	13350		314			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(180)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5438246928998	1	1094.54382	1093.53655	1.9695	0.0021557	0.34549	0.00037816	2.315	0.0025338	1094.5441380842751	30.777	0.072401	30.777	30.704	30.777	0	75	199	1.5741152	0.11680734	1.5741152	319.22327	0	23.687988						456	4	6	NaN	NaN	NaN	1.5841000000000002E-35	1	12551	12551		182.61	67.098	1	497050			16875	2723	9799	10014	13351	13351		314			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(150)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5438246928998	1	1094.54382	1093.53655	2.0185	0.0022093	0.37125	0.00040634	2.3897	0.0026156	1094.5443090963427	30.849	0.33783	30.849	30.825	31.163	0	78	217	1.5723488	0.12748027	1.5723488	318.86508	0	25.852417						1371	15	6	NaN	NaN	NaN	3.4198E-12	1	12552	12552		150.79	59.366	1	829860			16876	2723	9799	10014	13352	13352		314			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)	_M(Oxidation (M))ILELDPTF_		M(1)ILELDPTF		M(67)ILELDPTF	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5438246928998	1	1094.54382	1093.53655	2.0664	0.0022618	-0.048065	-5.2609E-05	2.0184	0.0022092	1094.544387577941	30.824	0.28968	30.818	30.818	31.108	-0.0057564	78	256	1.5723488	0.15058553	1.5708294	318.86508	0	30.538025						1211	13	6	NaN	NaN	NaN	0.023828	1	12230	12230		67.154	30.568	1	743420			16877	2723	9799	10014	13353	13353		314			-0.0064785858842242305
MILELDPTF	9	Oxidation (M)						0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1094.54382	1093.53655	0.75774	0.00082938	-0.87496	-0.00095768	-0.11722	-0.0001283	1094.5444747648937	31.789	0.19311	31.785	31.664	31.857	-0.0044174	78	70	1.5723488	0.040638685	1.5708294	318.86508		8.241333	0.093814	0.00056446	0.00012354	NaN	70.6	267	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32946			16878	2723	9799	10014				314			-0.0064785858842242305
MILESLIP	8	Unmodified	_MILESLIP_					0	0	0		tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.5219670388002	1	915.521967	914.514691	2.501	0.0022897	-2.0431	-0.0018705	0.45785	0.00041917	915.5178663296444	29.328	0.072405	29.32	29.32	29.393	-0.0077209	324	34	1.42687	0.019601583	1.4253505	290.06778	0	3.9848022						33	4	2	NaN	NaN	NaN	0.84887	1	6197	6197		0.32989	0	1	2076.6			16879	13887	9800	10015	13354	13354					0.05401381453691556
MILPAPPQ	8	Unmodified	_MILPAPPQ_					0	0	0			REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.4804365751	1	866.480437	865.47316	2.4208	0.0020976	0.18397	0.00015941	2.6048	0.002257	866.4810045454082	18.484	0.04793	18.484	18.436	18.484	0	459	49	1.3464937	0.028646827	1.3464937	273.958	0	5.8284607						58	3	2	NaN	NaN	NaN	0.79379	1	5610	5610		10.052	3.9612	1	6000.4	+		16880	13238	9801	10016	13355	13355					0.0350424548500996
MILYLQKEEYK	11	Unmodified	_MILYLQKEEYK_					0	0	0		ENST00000479172.5_1_10:104164653-104165190:-|nuORF;nc|ENSG00000059915|A5PKW4-2|PSD;ENSG00000059915|ENST00000020673|PSD	ENST00000479172.5_1_10:104164653-104165190:-|nuORF	ENST00000479172.5_1_10:104164653-104165190:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3890704913501	2	729.38907	1456.76359	1.3232	0.00096511	-6.9561	-0.0050737	-5.633	-0.0041086	729.3847771958358	24.454	0.12065	24.441	24.368	24.489	-0.012749	1017	37	1.010141	0.021917462	1.0086216	408.42548	0	8.861755						176	6	4	NaN	NaN	NaN	0.66717	1	19428	19428		9.6116	1.3668	1	16761			16881	633	9802	10017	13356	13356					0.05347679899750801
MIPPYVDPRL	10	Unmodified	_MIPPYVDPRL_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.82590912855	2	600.825909	1199.63727	1.11	0.0006669	-5.1568	-0.0030983	-4.0468	-0.0024314	600.8216612406178	25.033	0.16888	25.021	24.924	25.093	-0.012011	1092	100	0.9644182	0.060490906	0.96289873	390.72385	0	24.507263						269	8	3	NaN	NaN	NaN	0.65742	1	15820	15820		10.965	4.7149	1	34728			16882	5886	9803	10018	13357	13357					0.04543218185108344
MIPPYVDPRL	10	Unmodified						0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.825909	1199.63727	1.3619	0.00081829	-2.3323	-0.0014013	-0.97034	-0.00058301	601.3258205930841	25.009	0.19306	25.009	24.912	25.105	0	1092	55	0.9644182	0.03297192	0.9644182	390.72382		13.358246	-0.0059464	0.00039272	0.00075972	NaN	10.965	225	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28778			16883	5886	9803	10018							0.04543218185108344
MIQDKEVTL	9	Unmodified	_MIQDKEVTL_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENST00000483350.1_1_3:50036895-50096022:+|nuORF	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.78644961705	2	538.78645	1075.55835	1.7652	0.00095105	1.1679	0.00062927	2.9331	0.0015803	538.7869395108254	19.156	0.095934	19.156	19.132	19.228	0	1245	49	0.87076044	0.029466987	0.87076044	353.2418	0	11.953888						114	5	2	NaN	NaN	NaN	0.2961	1	11799	11799		19.164	2.5794	1	13891			16884	307	9804	10019	13358	13358					0.023589461601659423
MIQDKEVTL	9	Unmodified	_MIQDKEVTL_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENST00000483350.1_1_3:50036895-50096022:+|nuORF	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.78644961705	2	538.78645	1075.55835	1.4009	0.00075478	-0.29826	-0.0001607	1.1026	0.00059408	538.7870919189777	19.178	0.096098	19.164	19.14	19.236	-0.014141	1245	52	0.87076044	0.03131038	0.869241	353.2418	0	12.701691						112	5	2	NaN	NaN	NaN	0.2961	1	11490	11490		19.164	4.1507	1	13429			16885	307	9804	10019	13359	13359					0.023589461601659423
MIQQSHCW	8	Oxidation (M)	_M(Oxidation (M))IQQSHCW_		M(1)IQQSHCW		M(44)IQQSHCW	0	0	1		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|9|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|9|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|9|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4338970879999	1	1048.4339	1047.42662	2.4816	0.0026018	1.2765	0.0013384	3.7582	0.0039402	1048.4357076587614	26.07	0.14483	26.07	26.022	26.167	0	222	70	1.4873441	0.04085028	1.4873441	301.792	0	8.288818						208	7	3	NaN	NaN	NaN	0.27293	1	10509	10509		44.247	8.9504	1	17291			16886	7842	9805	10020	13360	13360		638			-0.09519562408581805
MITDGDVKI	9	Unmodified	_MITDGDVKI_					0	0	0			REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.26006769105	2	496.260068	990.505582	0.79036	0.00039222	-2.2664	-0.0011247	-1.476	-0.0007325	496.25899173448624	21.128	0.19263	21.114	20.993	21.186	-0.014004	1326	73	0.8209676	0.0443058	0.81944823	333.4037	0	17.993042						188	9	2	NaN	NaN	NaN	0.64666	1	8061	8061		3.5698	0	1	15769	+		16887	13573	9806	10021	13361	13361					0.00994988097352234
MITDGDVKI	9	Unmodified						0	0	0			REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.260068	990.505582	1.4108	0.00070011	-2.5506	-0.0012658	-1.1399	-0.00056566	496.25958760369736	21.151	0.072266	21.151	21.079	21.151	0	1326	82	0.8209676	0.04986292	0.8209676	333.4037		20.249878	0.01893	-0.00019948	0.00075972	NaN	3.5698	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9970.5	+		16888	13573	9806	10021							0.00994988097352234
MITDGDVKI	9	Unmodified						0	0	0			REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	REV__tr|U7T180|U7T180_FUSNUValine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=valSPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.260068	990.505582	0.79036	0.00039222	-2.2664	-0.0011247	-1.476	-0.0007325	496.25899173448624	21.128	0.19263	21.114	20.993	21.186	-0.014004	1326	73	0.8209676	0.0443058	0.81944823	333.4037		17.993042	-0.01893	8.2628E-05	-0.00075972	NaN	3.5698	188	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15769	+		16889	13573	9806	10021							0.00994988097352234
MITDLEERL	9	Unmodified	_MITDLEERL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.28935644675	2	560.289356	1118.56416	2.4035	0.0013467	-0.45813	-0.00025668	1.9454	0.00109	560.2890019767665	23.465	0.33747	23.465	23.345	23.682	0	1215	76	0.8891654	0.045994937	0.8891654	360.53268	0	18.64972						609	15	6	NaN	NaN	NaN	2.4698E-12	1	13618	13618		151.71	41.108	1	545200			16890	1231	9807	10022	13362	13362					0.009620446718372477
MITDLEERL	9	Unmodified	_MITDLEERL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.28935644675	2	560.289356	1118.56416	2.4887	0.0013944	-1.1277	-0.00063184	1.3609	0.00076252	560.288904835958	23.465	0.43405	23.451	23.331	23.765	-0.013294	1215	70	0.8891654	0.042315364	0.88764596	360.5327	0	17.157715						750	19	7	NaN	NaN	NaN	5.1574E-18	1	13214	13214		159.67	49.062	1	557130			16891	1231	9807	10022	13363	13363					0.009620446718372477
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(160)ITDLEERL	0	0	1		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2868137578	2	568.286814	1134.55907	2.1674	0.0012317	-2.2912	-0.0013021	-0.12382	-7.0366E-05	568.2867524291614	21.681	0.096388	21.681	21.633	21.73	0	1221	79	0.885486	0.047837377	0.885486	358.9792	0	19.393433						269	5	7	NaN	NaN	NaN	5.1574E-18	1	14262	14262		159.67	68.104	1	200000			16892	1231	9807	10023	13364	13364		133			-0.002822591907943206
MITDLEERL	9	Oxidation (M)	_M(Oxidation (M))ITDLEERL_		M(1)ITDLEERL		M(120)ITDLEERL	0	0	1		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2868137578	2	568.286814	1134.55907	1.6376	0.0009306	-2.1544	-0.0012243	-0.51687	-0.00029373	568.2868662371521	21.681	0.19247	21.667	21.595	21.788	-0.013895	1221	61	0.885486	0.03679794	0.88396657	358.9792	0	14.91803						287	9	6	NaN	NaN	NaN	0.00019594	1	13800	13800		117.07	35.367	1	226940			16893	1231	9807	10023	13365	13365		133			-0.002822591907943206
MITLPDEVK	9	Unmodified	_MITLPDEVK_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.28354278735	2	523.283543	1044.55253	1.5176	0.00079413	-2.4446	-0.0012792	-0.92703	-0.0004851	523.2824338092637	21.392	0.19258	21.378	21.33	21.523	-0.014006	1197	58	0.9001988	0.034933507	0.8986794	365.3211	0	14.176819						306	9	5	NaN	NaN	NaN	0.2961	1	10198	10198		19.164	1.1939	1	92888	+		16894	9733	9808	10024	13366	13366					0.03203847648478586
MIVGYSGGG	9	Unmodified	_MIVGYSGGG_					0	0	0		tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.3920154983002	1	840.392015	839.384739	0.87663	0.00073671	1.5962	0.0013415	2.4729	0.0020782	840.393324375787	29.111	0.26547	29.103	29.031	29.296	-0.0077209	468	70	1.3411216	0.041199565	1.3396021	272.9976	0	8.386536						305	12	3	NaN	NaN	NaN	0.42773	1	5128	5128		12.588	2.5363	1	41096			16895	14001	9809	10025	13367	13367					-0.041377948254421426
MIVIDFAQQ	9	Unmodified	_MIVIDFAQQ_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5444933949	1	1064.54449	1063.53722	0.97434	0.0010372	1.7529	0.001866	2.7272	0.0029032	1064.5467748643332	38.107	0.12016	38.107	38.107	38.227	0	87	49	1.5670487	0.028271914	1.5670487	317.90195	0	5.7354126						122	6	2	NaN	NaN	NaN	0.27442	1	11284	11284		20.555	2.7751	1	9589.9	+		16896	11124	9810	10026	13368	13368					0.007989808513002572
MIVIDFAQQ	9	Unmodified						0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1064.54449	1063.53722	0.97434	0.0010372	1.7529	0.001866	2.7272	0.0029032	1064.5467748643332	38.107	0.12016	38.107	38.107	38.227	0	87	49	1.5670487	0.028271914	1.5670487	317.90195		5.7354126	-0.012517	-0.00024345	0.00075972	NaN	20.555	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9589.9	+		16897	11124	9810	10026							0.007989808513002572
MIVIDFAQQ	9	Unmodified						0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1064.54449	1063.53722	1.6451	0.0017513	2.1962	0.0023379	3.8413	0.0040892	1064.5473554081925	38.129	0.12022	38.132	38.084	38.204	0.0034218	87	49	1.5670487	0.028271914	1.5655292	317.90195		5.7354126	0.012517	0.00022846	-0.00075972	NaN	20.555	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7644.1	+		16898	11124	9810	10026							0.007989808513002572
MIYPELVL	8	Unmodified	_MIYPELVL_					0	0	0		ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000120324|ENST00000239446|PCDHB10	ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000177839|ENST00000316105|PCDHB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.2724467848	2	489.272447	976.530341	1.1153	0.00054567	2.6366	0.00129	3.7518	0.0018357	489.2739344781168	22.524	0.072401	22.511	22.486	22.559	-0.013733	1323	67	0.8228144	0.04060483	0.82129496	334.21915	0	16.493286						96	4	2	NaN	NaN	NaN	0.80071	1	7644	7644		9.1232	0.83292	1	12470			16899	2254	9811	10027	13369	13369					0.04113667970739243
MKATGPHN	8	Unmodified	_MKATGPHN_					0	0	0		nc|ENSG00000230257|Q86UQ8-2|NFE4;nc|ENSG00000230257|Q86UQ8|NFE4	nc|ENSG00000230257|Q86UQ8-2|NFE4	nc|ENSG00000230257|Q86UQ8-2|NFE4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.21071219525	2	428.210712	854.406871	1.9766	0.00084639	4.7927	0.0020523	6.7693	0.0028987	428.213136260549	15.534	0.023987	15.534	15.534	15.558	0	1371	19	0.79324204	0.011100471	0.79324204	322.84586	0	4.5178223						24	2	2	NaN	NaN	NaN	0.84455	1	5455	5455		2.7852	0	1	1403.9			16900	8042	9812	10028	13370	13370					-0.02615570357033903
MKATGPHN	8	Unmodified						0	0	0		nc|ENSG00000230257|Q86UQ8-2|NFE4;nc|ENSG00000230257|Q86UQ8|NFE4	nc|ENSG00000230257|Q86UQ8-2|NFE4	nc|ENSG00000230257|Q86UQ8-2|NFE4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	428.210712	854.406871	2.1656	0.00092734	5.7193	0.002449	7.8849	0.0033764	428.213366572911	15.532	0.071965	15.52	15.496	15.568	-0.012202	1383	28	0.7858409	0.016656995	0.7843215	319.83362		6.7793274	-0.0070891	0.0003719	-0.0044603	NaN	2.7852	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2983.6			16901	8042	9812	10028							-0.02615570357033903
MKDQMCQYTL	10	Unmodified	_MKDQMCQYTL_					0	0	0			REV__ENST00000426249.1_1_17:18365525-18365891:+|nuORF	REV__ENST00000426249.1_1_17:18365525-18365891:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.7747016875	2	630.774702	1259.53485	1.0143	0.0006398	7.92	0.0049958	8.9343	0.0056356	630.7809967231583	20.694	0.14466	20.68	20.584	20.728	-0.014088	1164	55	0.9204082	0.033043087	0.91888875	372.69186	0	13.379852						142	7	3	NaN	NaN	NaN	0.72369	1	17207	17207		6.4299	1.2411	1	15788	+		16902	12130	9813	10029	13371	13371					-0.08453558940323092
MKEELLCPFH	10	Unmodified	_MKEELLCPFH_					0	0	0		tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8015767525001	2	623.801577	1245.5886	1.0149	0.00063312	-10.09	-0.0062943	-9.0753	-0.0056612	623.7956726745226	21.44	0.21679	21.426	21.354	21.571	-0.014006	1194	70	0.902037	0.042255938	0.9005176	365.29742	0	17.112396						284	10	3	NaN	NaN	NaN	0.77024	1	16903	16903		2.8895	0.71314	1	25888			16903	13739	9814	10030	13372	13372					-0.02437018446289585
MKFRFDECFLR	11	Unmodified	_MKFRFDECFLR_					0	0	0			REV__nc|ENSG00000158578|P22557-4|ALAS2	REV__nc|ENSG00000158578|P22557-4|ALAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.3654068173	2	746.365407	1490.71626	1.1579	0.00086421	-0.70349	-0.00052506	0.4544	0.00033915	746.3649490180958	35.36	0.12048	35.361	35.312	35.433	0.00053024	1020	37	1.0083145	0.021917462	1.006795	407.59955	0	8.859863						123	6	3	NaN	NaN	NaN	0.6875	1	19547	19547		8.2775	0	1	8047.8	+		16904	13148	9815	10031	13373	13373					-0.009468778522659704
MKFRFDECFLR	11	Unmodified						0	0	0			REV__nc|ENSG00000158578|P22557-4|ALAS2	REV__nc|ENSG00000158578|P22557-4|ALAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	746.365407	1490.71626	0.67336	0.00050257	0.52115	0.00038896	1.1945	0.00089154	746.3655617488773	35.385	0.14476	35.385	35.289	35.434	0	1020	46	1.0083145	0.027392387	1.0083145	407.59955		11.073059	0.012453	0.001412	0.00075972	NaN	8.2775	109	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8282.1	+		16905	13148	9815	10031							-0.009468778522659704
MKFRFDECFLR	11	Unmodified						0	0	0			REV__nc|ENSG00000158578|P22557-4|ALAS2	REV__nc|ENSG00000158578|P22557-4|ALAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	746.365407	1490.71626	1.1579	0.00086421	-0.70349	-0.00052506	0.4544	0.00033915	746.3649490180958	35.36	0.12048	35.361	35.312	35.433	0.00053024	1020	37	1.0083145	0.021917462	1.006795	407.59955		8.859863	-0.012453	-0.00041604	-0.00075972	NaN	8.2775	123	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8047.8	+		16906	13148	9815	10031							-0.009468778522659704
MKGGHALH	8	Unmodified	_MKGGHALH_					0	0	0			REV__ENST00000498571.1_1_3:49459509-49459862:-|nuORF	REV__ENST00000498571.1_1_3:49459509-49459862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.435217717	1	850.435218	849.427941	1.4437	0.0012278	-0.97331	-0.00082774	0.4704	0.00040004	850.434050379011	32.514	0.14476	32.514	32.466	32.611	0	1215	52	0.8891654	0.03126979	0.8891654	180.9633	0	6.364044						182	7	3	NaN	NaN	NaN	0.84887	1	5375	5375		0.32989	0	1	21363	+		16907	9918	9816	10032	13374	13374					-0.002795602575247358
MKGGHALH	8	Unmodified						0	0	0			REV__ENST00000498571.1_1_3:49459509-49459862:-|nuORF	REV__ENST00000498571.1_1_3:49459509-49459862:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	850.435218	849.427941	1.4437	0.0012278	-0.97331	-0.00082774	0.4704	0.00040004	850.434050379011	32.514	0.14476	32.514	32.466	32.611	0	1215	52	0.8891654	0.03126979	0.8891654	180.9633		6.364044	0.0021038	8.9752E-05	-0.00015998	NaN	0.32989	182	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21363	+		16908	9918	9816	10032							-0.002795602575247358
MKGPTNWCTYC	11	Unmodified	_MKGPTNWCTYC_					0	0	0			REV__ENST00000379059.7_2_X:24757666-24759571:+|nuORF	REV__ENST00000379059.7_2_X:24757666-24759571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.1804547094667	3	435.180455	1302.51953	1.8858	0.00082068	5.7929	0.002521	7.6787	0.0033416	435.1831518483183	18.388	0.14396	18.388	18.364	18.508	0	1389	34	0.7821392	0.020362973	0.7821392	474.88205	0	12.363525						213	7	4	NaN	NaN	NaN	0.76654	1	18816	18816		3.3044	1.0655	1	30772	+		16909	11955	9817	10033	13375	13375					-0.11962425737510785
MKGPTNWCTYC	11	Unmodified						0	0	0			REV__ENST00000379059.7_2_X:24757666-24759571:+|nuORF	REV__ENST00000379059.7_2_X:24757666-24759571:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	435.180455	1302.51953	1.8858	0.00082068	5.7929	0.002521	7.6787	0.0033416	435.1831518483183	18.388	0.14396	18.388	18.364	18.508	0	1389	34	0.7821392	0.020362973	0.7821392	474.88205		12.363525	-0.087578	-0.00013533	0.00075972	NaN	3.3044	213	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30772	+		16910	11955	9817	10033							-0.11962425737510785
MKIFQRKMRYW	11	Unmodified	_MKIFQRKMRYW_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;COL14A1|p.R123Kfs*25|1|0.37|ENSG00000187955|chr8:120168179-120168179|G/-|frameshift_variant;COL14A1|p.P852Hfs*5|1|0.28|ENSG00000187955|chr8:120247683-120247683|C/-|frameshift_variant	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.6197360966335	3	529.619736	1585.83738	1.8117	0.00095949	-2.7618	-0.0014627	-0.95009	-0.00050319	529.952763094779	23.586	0.048149	23.586	23.562	23.61	0	1374	76	0.791392	0.046229362	0.791392	479.59927	0	28.01593						138	3	3	NaN	NaN	NaN	0.77858	1	20731	20731		0.49077	0.058592	1	12018			16911	5528	9818	10034	13376	13376					0.0678936958106533
MKKANFEI	8	Unmodified	_MKKANFEI_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5233640223001	1	980.523364	979.516088	1.6635	0.0016311	4.7864	0.0046931	6.4498	0.0063242	980.5292971689352	36.446	0.096504	36.446	36.398	36.495	0	240	103	1.4766881	0.060448408	1.4766881	299.8997	0	12.276428						286	5	3	NaN	NaN	NaN	0.69898	1	7869	7869		19.118	2.7017	1	25935	+		16912	8503	9819	10035	13377	13377					0.02551015542451296
MKKKFFCV	8	Unmodified	_MKKKFFCV_					0	0	0			REV__ENST00000269141.7_1_18:25531022-25531103:-|nuORF	REV__ENST00000269141.7_1_18:25531022-25531103:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5576410386	1	1030.55764	1029.55036	1.61	0.0016592	-0.36435	-0.00037549	1.2456	0.0012837	1030.5565075599868	29.183	0.12068	29.175	29.079	29.2	-0.0077209	693	37	1.2062578	0.021664739	1.2047384	244.81294	0	4.396927						82	6	2	NaN	NaN	NaN	0.84727	1	9566	9566		1.2418	0	1	4337	+		16913	11583	9820	10036	13378	13378					0.036771404297041954
MKNLFLLNLF	10	Unmodified	_MKNLFLLNLF_					0	0	0		ENST00000552189.5_1_12:48477420-48482695:-|nuORF	ENST00000552189.5_1_12:48477420-48482695:-|nuORF	ENST00000552189.5_1_12:48477420-48482695:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.8597519459	2	626.859752	1251.70495	1.3775	0.00086351	-9.0581	-0.0056782	-7.6806	-0.0048147	626.8543413007038	32.104	0.33783	32.104	32.056	32.394	0	1137	61	0.9369253	0.036686838	0.9369253	379.4058	0	14.856262						427	15	4	NaN	NaN	NaN	0.12649	1	17821	17821		42.318	9.5396	1	108700			16914	7554	9821	10037	13379	13379					0.08916668115898574
MKNLFLLNLF	10	Unmodified	_MKNLFLLNLF_					0	0	0		ENST00000552189.5_1_12:48477420-48482695:-|nuORF	ENST00000552189.5_1_12:48477420-48482695:-|nuORF	ENST00000552189.5_1_12:48477420-48482695:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.8597519459	2	626.859752	1251.70495	0.71035	0.00044529	-8.9877	-0.005634	-8.2773	-0.0051887	626.8543327426112	32.248	0.26545	32.244	32.123	32.389	-0.0037613	1134	55	0.9387595	0.033014596	0.93724006	380.14856	0	13.369171						454	12	5	NaN	NaN	NaN	0.2358	1	17058	17058		32.453	3.5572	1	105610			16915	7554	9821	10037	13380	13380					0.08916668115898574
MKRLVLSRRRK	11	Unmodified	_MKRLVLSRRRK_					0	0	0			REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF	REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1442.9212661938	1	1442.92127	1441.91399	1.8113	0.0026136	0.8079	0.0011657	2.6192	0.0037794	1442.9233277052076	39.502	0.28855	39.502	39.478	39.767	0	777	79	1.1556307	0.047076464	1.1556307	233.64948	0	9.518066						332	13	2	NaN	NaN	NaN	0.78074	1	20333	20333		0.11306	0	1	48938	+		16916	11827	9822	10038	13381	13381					0.21070929192546828
MKSATDRDL	9	Unmodified	_MKSATDRDL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5091705210998	1	1036.50917	1035.50189	1.2347	0.0012798	-0.56969	-0.00059049	0.66504	0.00068932	1036.5119308248406	30.728	0.19307	30.728	30.632	30.825	0	180	100	1.5121819	0.058493376	1.5121819	306.87766	0	11.870483						339	9	3	NaN	NaN	NaN	0.31471	1	10008	10008		17.97	0.17071	1	49318			16917	2489	9823	10039	13382	13382					-0.014436816765282856
MKSNFFKFV	9	Unmodified	_MKSNFFKFV_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-2|POLK	REV__nc|ENSG00000122008|Q9UBT6-2|POLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.2038054165333	3	383.203805	1146.58959	1.6102	0.00061702	-6.0239	-0.0023084	-4.4137	-0.0016914	383.2016578345925	25.226	0.12067	25.226	25.202	25.322	0	1437	52	0.7524962	0.031531572	0.7524962	457.53458	0	19.171906						125	6	3	NaN	NaN	NaN	0.66863	1	14686	14686		1.8901	0.85009	1	14635	+		16918	13111	9824	10040	13383	13383					0.022155639849188447
MKSPEADPVE	10	Unmodified	_MKSPEADPVE_					0	0	0		ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7578891428501	2	551.757889	1101.50123	0.99718	0.0005502	-0.54105	-0.00029853	0.45612	0.00025167	551.757604538466	33.092	0.19299	33.09	33.042	33.235	-0.0024757	1218	103	0.8873258	0.06260389	0.8858064	359.8546	0	25.388977						395	9	3	NaN	NaN	NaN	0.47601	1	12554	12554		20.449	2.6497	1	73719			16919	4657	9825	10041	13384	13384					-0.04546521116208169
MKTIMVSHAP	10	Unmodified	_MKTIMVSHAP_					0	0	0			REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7910120662001	2	557.791012	1113.56747	1.177	0.00065651	-8.1566	-0.0045497	-6.9796	-0.0038932	557.785542814615	26.601	0.096508	26.59	26.494	26.59	-0.010645	1215	52	0.8891654	0.03126979	0.88764596	360.55243	0	12.679749						130	5	3	NaN	NaN	NaN	0.65442	1	13043	13043		11.17	0.56537	1	23622	+		16920	11796	9826	10042	13385	13385					0.01523016244846076
MKTIMVSHAP	10	Unmodified						0	0	0			REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.791012	1113.56747	1.5369	0.00085725	-10.827	-0.0060391	-9.2899	-0.0051818	557.7849561027462	26.577	0.072374	26.577	26.505	26.577	0	1215	58	0.8891654	0.034948587	0.8891654	360.55243		14.171478	-0.0065948	-0.0011618	0.00075972	NaN	11.17	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22406	+		16921	11796	9826	10042							0.01523016244846076
MKTIMVSHAP	10	Unmodified						0	0	0			REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.791012	1113.56747	1.177	0.00065651	-8.1566	-0.0045497	-6.9796	-0.0038932	557.785542814615	26.601	0.096508	26.59	26.494	26.59	-0.010645	1215	52	0.8891654	0.03126979	0.88764596	360.55243		12.679749	0.0065948	0.0018169	-0.00075972	NaN	11.17	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23622	+		16922	11796	9826	10042							0.01523016244846076
MKTVYKFA	8	Unmodified	_MKTVYKFA_					0	0	0		ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5332004271	1	987.5332	986.525924	1.5521	0.0015328	-8.6789	-0.0085707	-7.1268	-0.0070379	987.5230186029414	34.419	0.072319	34.419	34.395	34.467	-0.00064468	201	82	1.4997677	0.04790902	1.4982482	304.55692	0	9.728851						117	4	2	NaN	NaN	NaN	0.78264	1	7935	7935		11.548	0.94349	1	9730.3			16923	2216	9827	10043	13386	13386					0.03212203547820991
MKTVYKFA	8	Unmodified						0	0	0		ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	987.5332	986.525924	1.909	0.0018852	-11.939	-0.01179	-10.03	-0.0099049	987.5220313292303	34.421	0.1447	34.421	34.372	34.517	0	198	67	1.5015416	0.039039016	1.5015416	304.9172		7.9276123	0.0009477	-0.0011023	0.0016467	NaN	11.548	136	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10314			16924	2216	9827	10043							0.03212203547820991
MKVAPKFASP	10	Unmodified	_MKVAPKFASP_					0	0	0			REV__ANKRD30B|p.E537K|1|0.28|ENSG00000180777|chr18:14784472-14784472|G/A|missense_variant	REV__ANKRD30B|p.E537K|1|0.28|ENSG00000180777|chr18:14784472-14784472|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.3020698915001	2	538.30207	1074.58959	2.2821	0.0012285	2.0768	0.0011179	4.3589	0.0023464	538.3034110182341	13.829	0.12005	13.829	13.805	13.925	0	1218	34	0.8873258	0.020237803	0.8873258	359.96594	0	8.209961						79	6	2	NaN	NaN	NaN	0.60686	1	11762	11762		14.425	3.8201	1	7192.7	+		16925	8134	9828	10044	13387	13387					0.055275639849242
MKVGAGGA	8	Unmodified	_MKVGAGGA_					0	0	0		ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394002	1	690.360321	689.353045	0.98638	0.00068096	3.1439	0.0021704	4.1303	0.0028514	690.3636760563785	31.38	0.28961	31.38	31.259	31.549	0	756	121	1.1683017	0.072316766	1.1683017	238.65068	0	14.772247						420	13	2	NaN	NaN	NaN	0.84727	1	3011	3011		1.2418	0.91196	1	44070			16926	6581	9829	10045	13388	13388					-0.004057427887346421
MKVGAGGA	8	Unmodified	_MKVGAGGA_					0	0	0		ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394002	1	690.360321	689.353045	1.0779	0.00074415	4.3395	0.0029958	5.4174	0.00374	690.3634937723954	36.974	0.33676	36.976	36.904	37.241	0.0022507	735	118	1.1809633	0.07048988	1.1794438	241.23706	0	14.399078						523	15	2	NaN	NaN	NaN	0.84876	1	2944	2944		0.39566	0	1	54769			16927	6581	9829	10045	13389	13389					-0.004057427887346421
MKVGAGGA	8	Unmodified						0	0	0		ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	690.360321	689.353045	1.5006	0.001036	3.6799	0.0025405	5.1805	0.0035764	690.3629394580906	36.952	0.19238	36.952	36.88	37.072	0	735	118	1.1809633	0.07048988	1.1809633	241.23706		14.399078	-0.012038	-0.00026328	0.00075972	NaN	0.39566	370	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44595			16928	6581	9829	10045							-0.004057427887346421
MKVGAGGA	8	Unmodified						0	0	0		ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	ENST00000357814.7_2_17:72767432-72767837:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	690.360321	689.353045	0.75363	0.00052027	1.6607	0.0011465	2.4144	0.0016668	690.3641333932547	31.355	0.2413	31.35	31.253	31.495	-0.0050716	750	100	1.1719203	0.059670806	1.1704009	239.38985		12.189041	-0.015125	-0.0006844	0.0010496	NaN	1.2418	311	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28912			16929	6581	9829	10045							-0.004057427887346421
MKVGGYIIDT	10	Unmodified	_MKVGGYIIDT_					0	0	0		tr|U7STV1|U7STV1_FUSNUSmallribosomalsubunitbiogenesisGTPaseRsgAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsgAPE=3SV=1	tr|U7STV1|U7STV1_FUSNUSmallribosomalsubunitbiogenesisGTPaseRsgAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsgAPE=3SV=1	tr|U7STV1|U7STV1_FUSNUSmallribosomalsubunitbiogenesisGTPaseRsgAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsgAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7889923060001	2	548.788992	1095.56343	1.2513	0.00068668	-5.93	-0.0032543	-4.6788	-0.0025677	549.2865464761807	20.501	0.096201	20.487	20.463	20.559	-0.014143	1230	67	0.8799654	0.040499628	0.878446	356.89355	0	16.42569						136	5	2	NaN	NaN	NaN	0.64158	1	12326	12326		12.049	5.2547	1	14338			16930	13866	9830	10046	13390	13390					0.019472500227720957
MLAGFLLG	8	Unmodified	_MLAGFLLG_					0	0	0		ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4589728515002	1	821.458973	820.451696	1.8697	0.0015359	0.094035	7.7246E-05	1.9638	0.0016132	821.4606094636137	32.563	0.048233	32.563	32.539	32.587	0	411	37	1.3751161	0.021446228	1.3751161	280.02155	0	4.3671875						47	3	2	NaN	NaN	NaN	0.77734	1	5029	5029		12.26	0	1	2896.9			16931	5790	9831	10047	13391	13391					0.03428860456313032
MLAGFLLG	8	Unmodified						0	0	0		ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.458973	820.451696	1.4756	0.0012121	-0.90533	-0.0007437	0.57023	0.00046842	821.4587524047222	32.562	0.048199	32.558	32.534	32.583	-0.0031052	405	52	1.3786905	0.030383706	1.377171	280.7494		6.187195	-0.0020814	-0.00034468	0.0010275	NaN	12.26	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4751.8			16932	5790	9831	10047							0.03428860456313032
MLAIMKSIYD	10	Unmodified	_MLAIMKSIYD_					0	0	0		nc|ENSG00000115041|Q9Y2W7-3|KCNIP3;nc|ENSG00000115041|Q9Y2W7-2|KCNIP3;ENSG00000115041|ENST00000295225|KCNIP3;ENST00000377181.2_1_2:96020843-96049794:+|nuORF	nc|ENSG00000115041|Q9Y2W7-3|KCNIP3	nc|ENSG00000115041|Q9Y2W7-3|KCNIP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8063277794001	2	592.806328	1183.5981	0.74347	0.00044073	1.4026	0.00083147	2.1461	0.0012722	593.3083688197796	27.615	0.26544	27.605	27.46	27.726	-0.009552	1200	82	0.89836043	0.049610198	0.896841	364.01727	0	20.102142						395	12	2	NaN	NaN	NaN	0.67523	1	15357	15357		9.746	0.78402	1	50648			16933	1985	9832	10048	13392	13392					0.013647498392401758
MLARNHLEV	9	Unmodified	_MLARNHLEV_					0	0	0		ENST00000421176.3_1_19:44576381-44576411:+|nuORF	ENST00000421176.3_1_19:44576381-44576411:+|nuORF	ENST00000421176.3_1_19:44576381-44576411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5775248578	1	1082.57752	1081.57025	1.2111	0.0013111	-3.8639	-0.004183	-2.6529	-0.0028719	1082.5756471644847	30.462	0.14479	30.456	30.408	30.553	-0.0057545	93	76	1.5635144	0.044186592	1.5619949	317.11722	0	8.962067						204	7	3	NaN	NaN	NaN	0.14301	1	11742	11742		29.598	0	1	30150			16934	6912	9833	10049	13393	13393					0.03272607694020735
MLDDELVGAA	10	Unmodified	_MLDDELVGAA_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|166|3|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|163|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|166|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|166|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.4870380954999	1	1033.48704	1032.47976	1.7372	0.0017953	-0.74357	-0.00076847	0.9936	0.0010269	1033.4866277165052	22.453	0.096325	22.453	22.453	22.549	0	237	76	1.4784646	0.044383764	1.4784646	300.04672	0	9.007446						161	5	2	NaN	NaN	NaN	0.68669	1	9875	9875		8.962	0	1	13244			16935	7854	9834	10050	13394	13394					-0.03517906144929839
MLDDLWSL	8	Unmodified	_MLDDLWSL_					0	0	0			REV__ENSG00000144290|ENST00000446997|SLC4A10	REV__ENSG00000144290|ENST00000446997|SLC4A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4757451277002	1	992.475745	991.468469	2.5927	0.0025732	-2.9111	-0.0028892	-0.31835	-0.00031595	992.4730575450463	36.252	0.048233	36.253	36.205	36.253	0.0011024	294	34	1.4446791	0.019578695	1.4431597	293.34998	0	3.9755554						46	3	2	NaN	NaN	NaN	0.57691	1	8089	8089		26.732	0	1	2792.9	+		16936	9894	9835	10051	13395	13395					-0.02760683448400414
MLDDLWSL	8	Unmodified						0	0	0			REV__ENSG00000144290|ENST00000446997|SLC4A10	REV__ENSG00000144290|ENST00000446997|SLC4A10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.475745	991.468469	2.5927	0.0025732	-2.9111	-0.0028892	-0.31835	-0.00031595	992.4730575450463	36.252	0.048233	36.253	36.205	36.253	0.0011024	294	34	1.4446791	0.019578695	1.4431597	293.34998		3.9755554	0.011767	-0.00034174	-0.00075972	NaN	26.732	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2792.9	+		16937	9894	9835	10051							-0.02760683448400414
MLDNLVPQTR	10	Unmodified	_MLDNLVPQTR_					0	0	0			REV__nc|ENSG00000011114|Q9P203-5|BTBD7	REV__nc|ENSG00000011114|Q9P203-5|BTBD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.81607272375	2	593.816073	1185.61759	0.71413	0.00042406	-0.8764	-0.00052042	-0.16227	-9.6359E-05	593.8156719457947	21.007	0.28892	20.993	20.945	21.234	-0.014086	1161	55	0.9222442	0.03305024	0.92072475	373.6877	0	13.391785						350	13	4	NaN	NaN	NaN	0.5358	1	15424	15424		17.97	0	1	46394	+		16938	8402	9836	10052	13396	13396					0.03220842174346217
MLDNLVPQTR	10	Unmodified						0	0	0			REV__nc|ENSG00000011114|Q9P203-5|BTBD7	REV__nc|ENSG00000011114|Q9P203-5|BTBD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.816073	1185.61759	1.1331	0.00067288	-1.2202	-0.0007246	-0.087099	-5.1721E-05	593.8150548953702	20.887	0.19261	20.887	20.838	21.031	0	1158	46	0.92408	0.027537405	0.92408	374.43158		11.15802	-0.053223	-0.00020389	0.0016776	NaN	17.97	258	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39317	+		16939	8402	9836	10052							0.03220842174346217
MLDNLVPQTR	10	Unmodified						0	0	0			REV__nc|ENSG00000011114|Q9P203-5|BTBD7	REV__nc|ENSG00000011114|Q9P203-5|BTBD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.816073	1185.61759	0.71413	0.00042406	-0.8764	-0.00052042	-0.16227	-9.6359E-05	593.8156719457947	21.007	0.28892	20.993	20.945	21.234	-0.014086	1161	55	0.9222442	0.03305024	0.92072475	373.6877		13.391785	0.053223	0.00020447	-0.0016776	NaN	17.97	350	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46394	+		16940	8402	9836	10052							0.03220842174346217
MLDPLEVHL	9	Unmodified	_MLDPLEVHL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7837099628501	2	533.78371	1065.55287	1.9694	0.0010512	-0.093813	-5.0076E-05	1.8756	0.0010011	533.7837470916893	28.605	0.12064	28.605	28.556	28.677	0	1224	133	0.883646	0.08096427	0.883646	358.51163	0	32.848724						353	6	3	NaN	NaN	NaN	0.030391	1	11370	11370		58.599	32.847	1	55347			16941	4933	9837	10053	13397	13397					0.02271267368359986
MLDPLEVHL	9	Unmodified	_MLDPLEVHL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7837099628501	2	533.78371	1065.55287	0.76294	0.00040724	2.1578	0.0011518	2.9207	0.001559	533.7852215315369	28.604	0.072355	28.596	28.572	28.644	-0.0083504	1227	100	0.88180584	0.06069368	0.8802864	357.765	0	24.624542						320	4	4	NaN	NaN	NaN	0.12945	1	11107	11107		31.561	15.144	1	50165			16942	4933	9837	10053	13398	13398					0.02271267368359986
MLDPLEVHL	9	Oxidation (M)	_M(Oxidation (M))LDPLEVHL_		M(1)LDPLEVHL		M(78)LDPLEVHL	0	0	1		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7811672739001	2	541.781167	1081.54778	1.819	0.00098547	0.94732	0.00051324	2.7663	0.0014987	541.7817779138736	26.456	0.072382	26.456	26.456	26.529	0	1170	79	0.91673553	0.04777533	0.91673553	371.86646	0	19.37967						147	4	2	NaN	NaN	NaN	0.014943	1	12054	12054		78.398	45.261	1	31079			16943	4933	9837	10054	13399	13399		516			0.01026963505751155
MLDPLEVHL	9	Oxidation (M)	_M(Oxidation (M))LDPLEVHL_		M(1)LDPLEVHL		M(59)LDPLEVHL	0	0	1		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7811672739001	2	541.781167	1081.54778	1.3565	0.00073491	2.7462	0.0014878	4.1027	0.0022227	541.7828007668137	26.48	0.072378	26.47	26.446	26.518	-0.010645	1170	79	0.91673553	0.04778564	0.9152161	371.86646	0	19.38388						257	4	4	NaN	NaN	NaN	0.030391	1	11739	11739		58.599	30.81	1	33002			16944	4933	9837	10054	13400	13400		516			0.01026963505751155
MLDTGGTG	8	Unmodified	_MLDTGGTG_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3290808905001	1	751.329081	750.321804	1.2417	0.00093291	6.8685	0.0051605	8.1102	0.0060934	751.3336413728089	26.94	0.16886	26.94	26.867	27.036	0	576	55	1.2765218	0.032372475	1.2765218	260.34402	0	6.602295						158	8	2	NaN	NaN	NaN	0.50567	1	4055	4055		30.791	5.0393	1	13735	+		16945	9513	9838	10055	13401	13401					-0.06334360613493573
MLDTGGTG	8	Unmodified	_MLDTGGTG_					0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3290808905001	1	751.329081	750.321804	1.3643	0.001025	5.5711	0.0041858	6.9354	0.0052108	751.3334824736293	26.915	0.1448	26.904	26.856	27.001	-0.010645	576	58	1.2765218	0.034165382	1.2750024	260.34406	0	6.9679565						158	7	3	NaN	NaN	NaN	0.50567	1	3980	3980		30.791	5.0393	1	12694	+		16946	9513	9838	10055	13402	13402					-0.06334360613493573
MLDTGGTG	8	Unmodified						0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.329081	750.321804	1.2417	0.00093291	6.8685	0.0051605	8.1102	0.0060934	751.3336413728089	26.94	0.16886	26.94	26.867	27.036	0	576	55	1.2765218	0.032372475	1.2765218	260.34402		6.602295	0.017802	0.00059129	0.00075972	NaN	30.791	158	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13735	+		16947	9513	9838	10055							-0.06334360613493573
MLDTGGTG	8	Unmodified						0	0	0			REV__ENSG00000131203|ENST00000518237|IDO1	REV__ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.329081	750.321804	1.3643	0.001025	5.5711	0.0041858	6.9354	0.0052108	751.3334824736293	26.915	0.1448	26.904	26.856	27.001	-0.010645	576	58	1.2765218	0.034165382	1.2750024	260.34406		6.9679565	-0.017802	-0.00038349	-0.00075972	NaN	30.791	158	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12694	+		16948	9513	9838	10055							-0.06334360613493573
MLEAHMQSY	9	Unmodified	_MLEAHMQSY_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.4966601616334	3	370.49666	1108.46815	1.1904	0.00044104	3.1821	0.001179	4.3725	0.00162	370.83220664759097	34.107	0.19304	34.107	34.059	34.252	0	1494	61	0.7172283	0.037150323	0.7172283	436.2687	0	22.597443						378	9	5	NaN	NaN	NaN	0.31737	1	13205	13205		11.739	0	1	65195			16949	4684	9839	10056	13403	13403					-0.08174426439904892
MLEALPEGL	9	Oxidation (M)	_M(Oxidation (M))LEALPEGL_		M(1)LEALPEGL		M(47)LEALPEGL	0	0	1		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5019598782003	1	988.50196	987.494683	1.8687	0.0018473	-1.3333	-0.001318	0.53542	0.00052926	988.501228638721	24.96	0.072393	24.948	24.875	24.948	-0.012394	246	43	1.4731345	0.024882555	1.4716152	299.1445	0	5.052826						73	4	2	NaN	NaN	NaN	0.049695	1	7959	7959		47.04	13.342	1	7701.8			16950	227	9840	10057	13404	13404		17			0.000435857230968395
MLEFGPLLQ	9	Unmodified	_MLEFGPLLQ_					0	0	0			REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.5543297997	1	1047.55433	1046.54705	2.3009	0.0024103	-8.2097	-0.0086001	-5.9088	-0.0061898	1047.5447406984242	26.408	0.048271	26.408	26.384	26.432	0	189	67	1.5068626	0.03899765	1.5068626	305.7558	0	7.912964						61	3	2	NaN	NaN	NaN	0.66529	1	10490	10490		2.1763	0.2517	1	5367.2	+		16951	9437	9841	10058	13405	13405					0.025641688567020537
MLEFGPLLQ	9	Unmodified						0	0	0			REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1047.55433	1046.54705	2.3009	0.0024103	-8.2097	-0.0086001	-5.9088	-0.0061898	1047.5447406984242	26.408	0.048271	26.408	26.384	26.432	0	189	67	1.5068626	0.03899765	1.5068626	305.7558		7.912964	0.0057055	0.001157	-0.00012692	NaN	2.1763	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5367.2	+		16952	9437	9841	10058							0.025641688567020537
MLEFGPLLQ	9	Unmodified						0	0	0			REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	REV__ENST00000508168.5_1_4:980866-994923:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1047.55433	1046.54705	1.954	0.0020469	-10.657	-0.011164	-8.7032	-0.0091171	1047.542148564755	26.408	0.072407	26.397	26.373	26.445	-0.011137	186	52	1.5086359	0.030136228	1.5071164	306.1156		6.1148987	-0.0057055	-0.0014069	0.00012692	NaN	2.1763	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5669.2	+		16953	9437	9841	10058							0.025641688567020537
MLEREGMGMD	10	Unmodified	_MLEREGMGMD_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7434015591001	2	584.743402	1167.47225	1.1905	0.00069615	4.2138	0.002464	5.4043	0.0031601	584.7452398161702	34.178	0.14481	34.177	34.153	34.298	-0.0012474	1227	91	0.88180584	0.055214822	0.8802864	357.36618	0	22.376709						146	7	2	NaN	NaN	NaN	0.75466	1	14853	14853		4.3102	1.4207	1	12834			16954	1766	9842	10059	13406	13406					-0.10478705008495126
MLEREGMGMD	10	Unmodified						0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.743402	1167.47225	1.4979	0.00087592	3.6665	0.0021439	5.1644	0.0030198	584.7450749302566	34.179	0.1689	34.179	34.155	34.324	0	1227	97	0.88180584	0.058895826	0.88180584	357.36618		23.86847	0.0011953	-0.00026104	0.00075972	NaN	4.3102	176	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13807			16955	1766	9842	10059							-0.10478705008495126
MLESFCKW	8	Unmodified	_MLESFCKW_					0	0	0		ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant;nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2380810387	2	522.238081	1042.46161	1.1921	0.00062257	-0.45943	-0.00023993	0.73269	0.00038264	522.2379592771728	26.577	0.14478	26.566	26.542	26.687	-0.010645	1281	76	0.84864825	0.04611945	0.8471288	344.4097	0	18.716797						205	7	2	NaN	NaN	NaN	0.77489	1	10096	10096		12.588	1.9829	1	29457			16956	9	9843	10060	13407	13407					-0.05792319600641349
MLEWLQDIE	9	Unmodified	_MLEWLQDIE_					0	0	0		ENSG00000116922|ENST00000486637|C1orf109;ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENSG00000116922|ENST00000486637|C1orf109	ENSG00000116922|ENST00000486637|C1orf109	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7839069281	2	588.783907	1175.55326	1.7098	0.0010067	5.3895	0.0031733	7.0994	0.00418	588.7871056604981	27.277	0.41026	27.277	27.109	27.519	0	1203	106	0.8965218	0.064358115	0.8965218	363.3009	0	26.080109						553	18	2	NaN	NaN	NaN	0.25448	1	15658	15658		21.835	0.063931	1	150620			16957	2118	9844	10061	13408	13408					-0.027493577024642946
MLFFVSAVK	9	Unmodified	_MLFFVSAVK_					0	0	0		ENST00000448217.2_1_3:47484532-47518472:-|nuORF	ENST00000448217.2_1_3:47484532-47518472:-|nuORF	ENST00000448217.2_1_3:47484532-47518472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.29371354315	2	521.293714	1040.57287	1.2897	0.00067231	-3.5503	-0.0018507	-2.2606	-0.0011784	521.291824315727	27.229	0.12064	27.229	27.157	27.277	0	1269	49	0.8560222	0.02948612	0.8560222	347.41052	0	11.966736						88	6	3	NaN	NaN	NaN	0.19268	1	10246	10246		25.801	12.064	1	13011			16958	7031	9845	10062	13409	13409					0.05421063098947343
MLFGGFIRNFI	11	Unmodified	_MLFGGFIRNFI_					0	0	0			REV__ENST00000379297.5_1_X:23722013-23724857:-|nuORF	REV__ENST00000379297.5_1_X:23722013-23724857:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.9057594348667	3	438.905759	1313.69545	2.3088	0.0010133	-1.7993	-0.00078973	0.50947	0.00022361	438.90325846989714	17.378	0.048029	17.364	17.34	17.388	-0.013569	1374	25	0.791392	0.014800608	0.7898726	480.4572	0	8.985535						43	3	2	NaN	NaN	NaN	0.77743	1	18167	18167		0.55697	0.43905	1	2747.8	+		16959	9355	9846	10063	13410	13410					0.051148998303915505
MLFLSVTMCLS	11	Unmodified	_MLFLSVTMCLS_					0	0	0		ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.8080131886002	2	622.808013	1243.60147	1.0488	0.00065317	8.6356	0.0053783	9.6844	0.0060315	623.3148239948862	32.78	0.048244	32.78	32.756	32.804	0	1188	82	0.90571284	0.04959947	0.90571284	366.7924	0	20.086609						135	3	3	NaN	NaN	NaN	0.69801	1	17617	17617		7.5876	1.1577	1	11824			16960	3703	9847	10064	13411	13411					-0.010583233784018375
MLFLYAVGAF	10	Unmodified	_MLFLYAVGAF_					0	0	0			REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2989958863001	2	566.298996	1130.58344	1.403	0.00079451	-3.4264	-0.0019404	-2.0234	-0.0011459	566.2975345253947	32.152	0.14476	32.152	32.128	32.273	0	1206	100	0.894683	0.060746133	0.894683	362.723	0	24.627747						141	7	2	NaN	NaN	NaN	0.54036	1	14110	14110		17.78	2.3177	1	13888	+		16961	8528	9848	10065	13412	13412					0.023370457533928857
MLFLYAVGAF	10	Unmodified						0	0	0			REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.298996	1130.58344	1.403	0.00079451	-3.4264	-0.0019404	-2.0234	-0.0011459	566.2975345253947	32.152	0.14476	32.152	32.128	32.273	0	1206	100	0.894683	0.060746133	0.894683	362.723		24.627747	0.098951	0.00096988	-0.001079	NaN	17.78	141	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13888	+		16962	8528	9848	10065							0.023370457533928857
MLFLYAVGAF	10	Unmodified						0	0	0			REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.298996	1130.58344	0.544	0.00030807	-5.2768	-0.0029883	-4.7328	-0.0026802	566.7974385676498	31.958	0.14476	31.954	31.882	32.027	-0.0037613	1200	115	0.89836043	0.0699237	0.896841	364.2139		28.34851	-0.098951	-0.0011259	0.001079	NaN	17.78	230	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23397	+		16963	8528	9848	10065							0.023370457533928857
MLFQNFQLN	9	Unmodified	_MLFQNFQLN_					0	0	0		ENST00000520677.1_1_8:121432025-121437563:-|nuORF	ENST00000520677.1_1_8:121432025-121437563:-|nuORF	ENST00000520677.1_1_8:121432025-121437563:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7867839680501	2	577.786784	1153.55902	1.1135	0.00064335	4.4919	0.0025953	5.6053	0.0032387	578.2907622868731	33.961	0.19308	33.96	33.887	34.08	-0.0012474	1185	106	0.90755045	0.06435126	0.906031	367.8514	0	26.083038						669	9	5	NaN	NaN	NaN	0.062072	1	14431	14431		41.785	5.5497	1	144810			16964	7394	9849	10066	13413	13413					-0.011622144001194101
MLFVGLMR	8	Unmodified	_MLFVGLMR_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5263409102002	1	966.526341	965.519064	1.3955	0.0013488	-9.7009	-0.0093762	-8.3054	-0.0080274	966.5189332604849	30.535	0.072403	30.535	30.511	30.584	0	237	127	1.4784646	0.07468748	1.4784646	300.32092	0	15.171295						163	4	2	NaN	NaN	NaN	0.74197	1	7505	7505		16.436	1.4236	1	16452			16965	5592	9850	10067	13414	13414					0.03492567395619517
MLGGTILLI	9	Unmodified	_MLGGTILLI_					0	0	0			REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.5692515824002	1	930.569252	929.561975	1.565	0.0014563	-4.4157	-0.0041091	-2.8508	-0.0026528	930.5644991436033	34.54	0.096504	34.539	34.491	34.587	-0.00064468	276	37	1.4553556	0.021348357	1.4538362	295.7876	0	4.338867						77	5	2	NaN	NaN	NaN	0.062836	1	6468	6468		41.46	10.669	1	4201.2	+		16966	10553	9851	10068	13415	13415					0.09437660724688612
MLGGTILLI	9	Unmodified						0	0	0			REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.569252	929.561975	1.565	0.0014563	-4.4157	-0.0041091	-2.8508	-0.0026528	930.5644991436033	34.54	0.096504	34.539	34.491	34.587	-0.00064468	276	37	1.4553556	0.021348357	1.4538362	295.7876		4.338867	0.011095	-0.00010573	0.00012975	NaN	41.46	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4201.2	+		16967	10553	9851	10068							0.09437660724688612
MLGIVGPV	8	Unmodified	_MLGIVGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4589728515001	1	785.458973	784.451696	1.1972	0.00094032	-8.716	-0.0068461	-7.5188	-0.0059057	785.4508628034574	52.498	0.047935	52.497	52.473	52.521	-0.00032043	525	22	1.3070582	0.012563109	1.3055388	266.36368	0	2.5602112						36	3	2	NaN	NaN	NaN	0.83849	1	4472	4472		4.0537	2.3833	1	1812.5	+		16968	10114	9852	10069	13416	13416					0.05084860456304341
MLGLFPSDVP	10	Unmodified	_MLGLFPSDVP_					0	0	0			REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.2782604442001	2	538.27826	1074.54197	1.9646	0.0010575	-5.4521	-0.0029347	-3.4875	-0.0018772	538.2758649651222	18.988	0.16794	18.988	18.94	19.108	0	1236	61	0.876284	0.036833763	0.876284	355.48682	0	14.942535						184	8	4	NaN	NaN	NaN	0.64158	1	11749	11749		12.049	3.0867	1	16099	+		16969	12514	9853	10070	13417	13417					0.00767864994077172
MLGLFPSDVP	10	Unmodified						0	0	0			REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.27826	1074.54197	1.9646	0.0010575	-5.4521	-0.0029347	-3.4875	-0.0018772	538.2758649651222	18.988	0.16794	18.988	18.94	19.108	0	1236	61	0.876284	0.036833763	0.876284	355.48682		14.942535	-0.015776	-0.00015912	0.00075972	NaN	12.049	184	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16099	+		16970	12514	9853	10070							0.00767864994077172
MLGLFPSDVP	10	Unmodified						0	0	0			REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	REV__ENST00000498753.1_1_3:141762467-141763034:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.27826	1074.54197	1.3656	0.00073509	-5.1963	-0.0027971	-3.8307	-0.002062	538.2753909163229	19.034	0.16813	19.02	18.924	19.092	-0.014059	1236	70	0.876284	0.04236108	0.8747646	355.48682		17.184845	0.015776	0.0001162	-0.00075972	NaN	12.049	197	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18394	+		16971	12514	9853	10070							0.00767864994077172
MLIEKDPSL	9	Unmodified	_MLIEKDPSL_					0	0	0		nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.28354278735	2	523.283543	1044.55253	1.1751	0.0006149	-2.1514	-0.0011258	-0.97635	-0.00051091	523.2834181523597	20.887	0.096447	20.887	20.838	20.935	0	1260	112	0.8615505	0.068116724	0.8615505	349.63675	0	27.64331						157	5	3	NaN	NaN	NaN	0.19268	1	10407	10407		25.801	1.9505	1	17158			16972	2859	9854	10071	13418	13418					0.03203847648478586
MLIILSRW	8	Oxidation (M)	_M(Oxidation (M))LIILSRW_		M(1)LIILSRW		M(100)LIILSRW	0	0	1			REV__ENST00000374466.3_1_10:43651147-43651228:+|nuORF	REV__ENST00000374466.3_1_10:43651147-43651228:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.6019486943	1	1047.60195	1046.59467	1.8265	0.0019135	6.6794	0.0069973	8.5059	0.0089108	1047.6088187844748	30.825	0.24132	30.825	30.777	31.018	0	81	142	1.5705823	0.08311474	1.5705823	318.6848	0	16.864716						744	11	5	NaN	NaN	NaN	0.034452	1	10502	10502		101.55	7.6254	1	261050	+		16973	11930	9855	10072	13419	13419		652			0.07323867847549081
MLKEKQSN	8	Unmodified	_MLKEKQSN_					0	0	0			REV__AKAP9|p.K513M|1|0.26|ENSG00000127914|chr7:92001455-92001455|A/T|missense_variant	REV__AKAP9|p.K513M|1|0.26|ENSG00000127914|chr7:92001455-92001455|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5084422396001	1	977.508442	976.501166	1.075	0.0010508	4.6136	0.0045099	5.6886	0.0055607	977.5133973629651	35.625	0.19286	35.626	35.602	35.794	0.00053024	243	67	1.4749115	0.03907633	1.473392	299.5517	0	7.9363403						190	9	3	NaN	NaN	NaN	0.72013	1	7637	7637		17.799	2.6236	1	16867	+		16974	8127	9856	10073	13420	13420					0.01197523674443346
MLKEKQSN	8	Unmodified						0	0	0			REV__AKAP9|p.K513M|1|0.26|ENSG00000127914|chr7:92001455-92001455|A/T|missense_variant	REV__AKAP9|p.K513M|1|0.26|ENSG00000127914|chr7:92001455-92001455|A/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	977.508442	976.501166	1.075	0.0010508	4.6136	0.0045099	5.6886	0.0055607	977.5133973629651	35.625	0.19286	35.626	35.602	35.794	0.00053024	243	67	1.4749115	0.03907633	1.473392	299.5517		7.9363403	-0.00049261	0.00044291	-0.00075972	NaN	17.799	190	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16867	+		16975	8127	9856	10073							0.01197523674443346
MLKVYDLHR	9	Unmodified	_MLKVYDLHR_					0	0	0			REV__ENSG00000269113|ENST00000606738|TRABD2B	REV__ENSG00000269113|ENST00000606738|TRABD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.2182260159333	3	392.218226	1173.63285	1.4076	0.00055211	3.0633	0.0012015	4.4709	0.0017536	392.21949456926575	22.501	0.096325	22.501	22.453	22.549	0	1422	46	0.7617651	0.027803838	0.7617651	463.0436	0	16.900757						69	5	2	NaN	NaN	NaN	0.31737	1	15613	15613		11.739	0	1	8192.6	+		16976	11408	9857	10074	13421	13421					0.052977537621927695
MLLCLSLE	8	Unmodified	_MLLCLSLE_					0	0	0		ENSG00000204956|ENST00000517417|PCDHGA1;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	ENSG00000204956|ENST00000517417|PCDHGA1	ENSG00000204956|ENST00000517417|PCDHGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.4783876646002	1	921.478388	920.471111	1.1361	0.0010469	-6.1115	-0.0056316	-4.9755	-0.0045848	921.4723679783746	33.094	0.072372	33.094	33.069	33.142	0	330	43	1.4233059	0.024948835	1.4233059	289.3155	0	5.07135						73	4	2	NaN	NaN	NaN	0.80071	1	6417	6417		9.1232	1.533	1	5100.7			16977	5911	9858	10075	13422	13422					0.0076944868491182206
MLLDHNCFL	9	Unmodified	_MLLDHNCFL_					0	0	0			REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2620874512501	2	553.262087	1104.50962	1.0043	0.00055566	-9.9409	-0.0054999	-8.9366	-0.0049443	553.2562121292339	20.887	0.24068	20.873	20.776	21.017	-0.014088	1254	73	0.8652351	0.04422444	0.86371565	350.88397	0	17.9346						408	11	4	NaN	NaN	NaN	0.35794	1	12682	12682		15.463	0.28729	1	79716	+		16978	11698	9859	10076	13423	13423					-0.03845245680577136
MLLDHNCFL	9	Unmodified						0	0	0			REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.262087	1104.50962	1.1505	0.00063652	-10.921	-0.0060422	-9.7705	-0.0054056	553.2557873303219	20.862	0.14458	20.862	20.79	20.935	0	1251	70	0.8670771	0.04238403	0.8670771	351.63098		17.188232	-0.0051027	-0.00045302	0.0016807	NaN	15.463	306	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62538	+		16979	11698	9859	10076							-0.03845245680577136
MLLDHNCFL	9	Unmodified						0	0	0			REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	REV__ENST00000314133.3_1_11:63743886-63743943:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.262087	1104.50962	1.0043	0.00055566	-9.9409	-0.0054999	-8.9366	-0.0049443	553.2562121292339	20.887	0.24068	20.873	20.776	21.017	-0.014088	1254	73	0.8652351	0.04422444	0.86371565	350.88397		17.9346	0.0051027	0.00063144	-0.0016807	NaN	15.463	408	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79716	+		16980	11698	9859	10076							-0.03845245680577136
MLLGPVPP	8	Unmodified	_MLLGPVPP_					0	0	0		ENST00000590343.1_1_19:5785216-5785408:-|nuORF;ENST00000589085.5_1_19:5785216-5787684:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L	ENST00000590343.1_1_19:5785216-5785408:-|nuORF	ENST00000590343.1_1_19:5785216-5785408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.24094969115004	2	412.24095	822.467346	1.5751	0.00064931	-1.6603	-0.00068444	-0.085201	-3.5123E-05	412.2403966515842	55.1	0.02412	55.1	55.1	55.124	0	1422	31	0.7617651	0.018532872	0.7617651	310.2251	0	7.5474243						59	2	3	NaN	NaN	NaN	0.83849	1	5052	5052		4.0537	2.3833	1	5174			16981	3351	9860	10077	13424	13424					0.049011469733500235
MLLHSFNGANR	11	Unmodified	_MLLHSFNGANR_					0	0	0			REV__ENST00000474600.1_1_3:44497118-44519129:-|nuORF	REV__ENST00000474600.1_1_3:44497118-44519129:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.5486347585	3	420.548635	1258.62407	1.4197	0.00059705	-9.18	-0.0038606	-7.7603	-0.0032636	420.5444528111738	14.333	0.21598	14.333	14.285	14.501	0	1443	37	0.7487872	0.022258759	0.7487872	454.7983	0	13.519531						180	10	3	NaN	NaN	NaN	0.62211	1	17965	17965		6.3563	0	1	14699	+		16982	12348	9861	10078	13425	13425					0.005107801257281608
MLLILVFFT	9	Unmodified	_MLLILVFFT_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.8273891850001	2	548.827389	1095.64023	1.3823	0.00075863	6.0835	0.0033388	7.4657	0.0040974	548.8310138805252	28.967	0.24137	28.967	28.846	29.087	0	1218	91	0.8873258	0.05519694	0.8873258	359.8784	0	22.386566						424	11	2	NaN	NaN	NaN	0.55027	1	12669	12669		7.5404	0.55601	1	77514	+		16983	11434	9862	10079	13426	13426					0.0962309330991502
MLLKPHSRV	9	Unmodified	_MLLKPHSRV_					0	0	0		ENST00000489173.1_1_3:52324715-52325174:+|nuORF;nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-5|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	ENST00000489173.1_1_3:52324715-52325174:+|nuORF	ENST00000489173.1_1_3:52324715-52325174:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.8830662464667	3	360.883066	1079.62737	2	0.00072176	7.047	0.0025431	9.047	0.0032649	360.8855387126827	15.628	0.23981	15.616	15.4	15.64	-0.012201	1500	34	0.71351165	0.02044487	0.7119922	434.15005	0	12.440094						144	11	2	NaN	NaN	NaN	0.31737	1	11668	11668		11.739	0	1	17877			16984	4606	9863	10080	13427	13427					0.09074074970385482
MLLLFKQLL	9	Unmodified	_MLLLFKQLL_					0	0	0			REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.5717176798667	3	373.571718	1117.69332	2.0455	0.00076414	-0.19104	-7.1367E-05	1.8545	0.00069277	373.571490813878	19.346	0.12015	19.332	19.284	19.404	-0.014141	1401	40	0.77473325	0.024073124	0.7732138	471.1996	0	14.64151						69	6	2	NaN	NaN	NaN	0.68748	1	13194	13194		0.094767	0	1	5153.9	+		16985	12373	9864	10081	13428	13428					0.1391847109259743
MLLLFKQLL	9	Unmodified						0	0	0			REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	REV__ENST00000479534.5_1_1:17395541-17401618:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	373.571718	1117.69332	2.0455	0.00076414	-0.19104	-7.1367E-05	1.8545	0.00069277	373.571490813878	19.346	0.12015	19.332	19.284	19.404	-0.014141	1401	40	0.77473325	0.024073124	0.7732138	471.1996		14.64151	0.064002	0.00072478	-0.0026114	NaN	0.094767	69	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5153.9	+		16986	12373	9864	10081							0.1391847109259743
MLMPVHFL	8	Unmodified	_MLMPVHFL_					0	0	0		ENSG00000178473|ENST00000380433|UCN3	ENSG00000178473|ENST00000380433|UCN3	ENSG00000178473|ENST00000380433|UCN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.26135916975005	2	494.261359	986.508165	1.4572	0.00072025	-2.091	-0.0010335	-0.6338	-0.00031326	494.2607951711485	20.381	0.16827	20.381	20.333	20.501	0	1326	76	0.8209676	0.046149373	0.8209676	333.42218	0	18.742798						169	8	2	NaN	NaN	NaN	0.83849	1	8099	8099		4.0537	0.90034	1	16201			16987	5112	9865	10082	13429	13429					0.014371650213206522
MLPDDSQY	8	Unmodified	_MLPDDSQY_					0	0	0		KIF24|p.K150E|1|0.19|ENSG00000186638|chr9:34310899-34310899|T/C|missense_variant;nc|ENSG00000186638|Q5T7B8-3|KIF24;KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant;nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24	KIF24|p.K150E|1|0.19|ENSG00000186638|chr9:34310899-34310899|T/C|missense_variant	KIF24|p.K150E|1|0.19|ENSG00000186638|chr9:34310899-34310899|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.70512529085	2	484.705125	967.395698	1.3553	0.00065694	0.023115	1.1204E-05	1.3785	0.00066814	484.7055370839087	29.979	0.26545	29.973	29.925	30.19	-0.0064087	1338	34	0.81357855	0.020323336	0.8120591	330.511	0	8.256226						178	12	3	NaN	NaN	NaN	0.78967	1	7384	7384		10.605	0	1	14171			16988	5481	9866	10083	13430	13430					-0.08930437241826894
MLPEILIIH	9	Unmodified	_MLPEILIIH_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000467378.1_1_X:47106498-47106892:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8200954691501	2	539.820095	1077.62564	1.5233	0.00082232	-10.671	-0.0057602	-9.1472	-0.0049378	539.8137360253345	36.085	0.21715	36.085	36.012	36.229	0	1251	91	0.8670771	0.055226803	0.8670771	351.73907	0	22.40332						439	10	4	NaN	NaN	NaN	0.51184	1	11877	11877		9.1232	1.5828	1	58785			16989	1371	9867	10084	13431	13431					0.08993021161791148
MLPSVSIDLL	10	Unmodified	_MLPSVSIDLL_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.6067593007	1	1087.60676	1086.59948	0.91689	0.00099722	-1.303	-0.0014172	-0.38613	-0.00041996	1087.6065519364276	32.682	0.16893	32.679	32.631	32.8	-0.0031052	120	85	1.5476005	0.04952824	1.5460811	313.8712	0	10.044891						378	8	4	NaN	NaN	NaN	0.051632	1	11941	11941		52.624	7.9856	1	80080	+		16990	9254	9868	10085	13432	13432					0.05964707199655095
MLPSVSIDLL	10	Unmodified						0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1087.60676	1086.59948	0.91689	0.00099722	-1.303	-0.0014172	-0.38613	-0.00041996	1087.6065519364276	32.682	0.16893	32.679	32.631	32.8	-0.0031052	120	85	1.5476005	0.04952824	1.5460811	313.8712		10.044891	-0.0020987	0.00025719	0.00012485	NaN	52.624	378	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80080	+		16991	9254	9868	10085							0.05964707199655095
MLPVWFTN	8	Unmodified	_MLPVWFTN_					0	0	0		NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.25458838265	2	504.254588	1006.49462	1.3957	0.00070378	-3.3847	-0.0017068	-1.989	-0.001003	504.25267887104843	20.453	0.0721	20.453	20.405	20.477	0	1293	46	0.84127116	0.027665615	0.84127116	341.57483	0	11.232849						85	4	3	NaN	NaN	NaN	0.6053	1	8834	8834		24.961	4.5124	1	16640			16992	4691	9869	10086	13433	13433					-0.008363694862737248
MLPVWFTN	8	Unmodified						0	0	0		NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.254588	1006.49462	1.1653	0.00058761	-1.8451	-0.00093039	-0.67976	-0.00034277	504.2537625787832	20.453	0.048161	20.439	20.415	20.463	-0.014143	1302	34	0.8357362	0.020290375	0.8342168	339.3275		8.238312	-0.0069811	0.00045844	-0.0035272	NaN	24.961	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14004			16993	4691	9869	10086							-0.008363694862737248
MLQRGLWPW	9	Unmodified	_MLQRGLWPW_					0	0	0		ENSG00000005059|ENST00000394650|MCUB;ENST00000472310.5_1_4:110481463-110603916:+|nuORF	ENSG00000005059|ENST00000394650|MCUB	ENSG00000005059|ENST00000394650|MCUB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8131361043	2	593.813136	1185.61172	1.1091	0.0006586	-4.0377	-0.0023977	-2.9286	-0.001739	593.809895239938	24.671	0.072348	24.671	24.647	24.719	0	1479	52	0.72651637	0.03156233	0.72651637	294.38	0	12.788849						77	4	2	NaN	NaN	NaN	0.68748	1	16033	16033		0.27539	0	1	9029.8			16994	319	9870	10087	13434	13434					0.026337884533404576
MLQTETIQ	8	Unmodified	_MLQTETIQ_					0	0	0		ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.24441762684995	2	482.244418	962.474282	1.7867	0.00086165	4.9069	0.0023663	6.6936	0.003228	482.24689172531544	19.516	0.21598	19.516	19.372	19.588	0	1323	73	0.8228144	0.044320166	0.8228144	334.28693	0	18.006073						178	10	2	NaN	NaN	NaN	0.78967	1	7402	7402		10.605	1.4818	1	13813			16995	4745	9871	10088	13435	13435					-0.008455849367464907
MLQTETIQ	8	Unmodified						0	0	0		ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.244418	962.474282	2.1675	0.0010452	5.1644	0.0024905	7.3318	0.0035357	482.2479574852077	19.539	0.09634	19.524	19.476	19.573	-0.014143	1320	70	0.824661	0.04247582	0.8231416	335.03714		17.256744	0.0041873	0.00015809	0.00016357	NaN	10.605	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9331.1			16996	4745	9871	10088							-0.008455849367464907
MLSCDDSCPI	10	Unmodified	_MLSCDDSCPI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.21140293895	2	542.211403	1082.40825	1.5826	0.00085813	-1.011	-0.00054818	0.57163	0.00030995	542.2114373476209	21.537	0.12049	21.537	21.488	21.609	0	1296	46	0.8394264	0.027674615	0.8394264	340.50323	0	11.225891						207	6	5	NaN	NaN	NaN	0.72631	1	12070	12070		6.2502	0	1	31017	+		16997	9279	9872	10089	13436	13436					-0.1296548516547773
MLSCMMFLL	9	Unmodified	_MLSCMMFLL_					0	0	0			REV__ENST00000265395.6_1_7:27672060-27689162:-|nuORF	REV__ENST00000265395.6_1_7:27672060-27689162:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7541950916001	2	544.754195	1087.49384	1.4981	0.00081612	-9.5693	-0.0052129	-8.0711	-0.0043968	544.7496240865213	28.822	0.24135	28.822	28.701	28.943	0	1248	79	0.8689189	0.047873557	0.8689189	352.44583	0	19.418182						429	11	5	NaN	NaN	NaN	0.45297	1	12263	12263		11.548	0.94349	1	75685	+		16998	11569	9873	10090	13437	13437					-0.046409915134972834
MLSGLLIWPFL	11	Unmodified	_MLSGLLIWPFL_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.5823938165	3	430.582394	1288.72535	1.36	0.00058557	-6.606	-0.0028444	-5.2461	-0.0022589	430.57968992789	25.057	0.096516	25.057	25.033	25.129	0	1335	37	0.8154261	0.022172093	0.8154261	495.14807	0	13.46347						80	5	3	NaN	NaN	NaN	0.76251	1	18578	18578		3.3044	2.5126	1	7862.9	+		16999	9447	9874	10091	13438	13438					0.09253838775703116
MLSLLFLCI	9	Unmodified	_MLSLLFLCI_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|70|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|70|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|70|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7977744658	2	526.797774	1051.581	1.8658	0.00098291	-0.80097	-0.00042195	1.0649	0.00056096	526.7966190919466	35.167	0.048313	35.167	35.143	35.191	-4.5776E-05	1290	25	0.84311575	0.014755845	0.8415963	342.12573	0	5.987732						37	3	2	NaN	NaN	NaN	0.61413	1	10486	10486		4.9097	0	1	2308			17000	7813	9875	10092	13439	13439					0.05726874024071549
MLSSHGGEI	9	Unmodified	_MLSSHGGEI_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.7211097060501	2	465.72111	929.427666	1.0453	0.00048684	3.5874	0.0016707	4.6328	0.0021576	465.7228345773871	32.297	0.31371	32.297	32.177	32.49	0	1275	184	0.85233563	0.11255604	0.85233563	346.45392	0	45.751312						1035	14	4	NaN	NaN	NaN	0.27442	1	6578	6578		20.555	1.2707	1	175860			17001	663	9876	10093	13440	13440					-0.0398702476801418
MLSTSSSSFL	10	Unmodified	_MLSTSSSSFL_					0	0	0		ENST00000495568.7_1_16:88786791-88786842:-|nuORF	ENST00000495568.7_1_16:88786791-88786842:-|nuORF	ENST00000495568.7_1_16:88786791-88786842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2549823131501	2	530.254982	1058.49541	1.8585	0.00098548	2.7272	0.0014461	4.5857	0.0024316	530.2572481737978	30.27	0.048256	30.27	30.27	30.318	0	1269	46	0.8560222	0.027650714	0.8560222	347.33368	0	11.21933						53	3	2	NaN	NaN	NaN	0.67523	1	11014	11014		9.746	1.4557	1	3387.3			17002	7286	9877	10094	13441	13441					-0.03149619627879474
MLSVHAEQMH	10	Unmodified	_MLSVHAEQMH_					0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7733506293	2	591.773351	1181.53215	0.62366	0.00036907	-0.72657	-0.00042996	-0.10291	-6.0898E-05	591.7724140847755	35.096	0.16893	35.096	35.048	35.217	0	1179	58	0.9112251	0.034914613	0.9112251	369.23752	0	14.147766						173	8	3	NaN	NaN	NaN	0.62764	1	15867	15867		13.003	0	1	30837			17003	380	9878	10095	13442	13442					-0.05135646282974449
MLSVHAEQMH	10	Unmodified						0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.773351	1181.53215	0.70847	0.00041926	-1.1402	-0.00067476	-0.43175	-0.0002555	591.7724659158533	35.07	0.26546	35.07	35.022	35.287	-4.5776E-05	1176	52	0.9130621	0.031232655	0.91154265	369.9819		12.655762	-0.012797	-0.00027943	0.00015879	NaN	13.003	216	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37905			17004	380	9878	10095							-0.05135646282974449
MLSWLEMLS	9	Unmodified	_MLSWLEMLS_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.51717270306665	3	370.517173	1108.52969	1.5243	0.00056477	-4.2753	-0.0015841	-2.7511	-0.0010193	370.5153866311283	14.165	0.23955	14.154	14.082	14.321	-0.011219	1548	76	0.6837494	0.04651618	0.68222994	415.90424	0	28.294373						263	11	3	NaN	NaN	NaN	0.47587	1	12846	12846		6.4299	0	1	34287	+		17005	8651	9879	10096	13443	13443					-0.020234947406379433
MLTKLTIML	9	Unmodified	_MLTKLTIML_					0	0	0			REV__ENST00000480058.5_1_6:4041151-4042740:+|nuORF	REV__ENST00000480058.5_1_6:4041151-4042740:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.6253862528	1	1063.62539	1062.61811	1.1754	0.0012502	1.2189	0.0012964	2.3943	0.0025466	1063.6267128452973	37.482	0.1926	37.482	37.41	37.602	0	63	49	1.5811787	0.028250933	1.5811787	320.772	0	5.731262						121	9	2	NaN	NaN	NaN	0.20577	1	11254	11254		24.961	3.126	1	9580.7	+		17006	12374	9880	10097	13444	13444					0.08930545569842252
MLTLIDMP	8	Unmodified	_MLTLIDMP_					0	0	0			REV__ENST00000361478.1_1_X:68382663-68382804:-|nuORF	REV__ENST00000361478.1_1_X:68382663-68382804:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4783876646001	1	933.478388	932.471111	0.76648	0.0007155	-5.1447	-0.0048024	-4.3782	-0.0040869	933.47467796103	33.502	0.048244	33.501	33.476	33.525	-0.0018463	267	61	1.4606913	0.035565495	1.4591719	296.85852	0	7.2280273						88	3	2	NaN	NaN	NaN	0.09307	1	6523	6523		65.672	2.3618	1	12187	+		17007	11847	9881	10098	13445	13445					0.002174486848957713
MLTLIDMP	8	Unmodified						0	0	0			REV__ENST00000361478.1_1_X:68382663-68382804:-|nuORF	REV__ENST00000361478.1_1_X:68382663-68382804:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	933.478388	932.471111	0.76648	0.0007155	-5.1447	-0.0048024	-4.3782	-0.0040869	933.47467796103	33.502	0.048244	33.501	33.476	33.525	-0.0018463	267	61	1.4606913	0.035565495	1.4591719	296.85852		7.2280273	-0.0016077	-0.00053315	0.00012946	NaN	65.672	88	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12187	+		17008	11847	9881	10098							0.002174486848957713
MLTNARLLFGP	11	Unmodified	_MLTNARLLFGP_					0	0	0		ENSG00000122140|ENST00000241600|MRPS2	ENSG00000122140|ENST00000241600|MRPS2	ENSG00000122140|ENST00000241600|MRPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.5655142874999	3	411.565514	1231.67471	1.1305	0.00046527	5.1782	0.0021312	6.3087	0.0025964	411.5677391463638	22.717	0.12063	22.704	22.631	22.752	-0.01354	1428	37	0.7580582	0.022244275	0.75653875	460.53836	0	13.513947						151	6	3	NaN	NaN	NaN	0.54514	1	16601	16601		9.0037	0.062135	1	26824			17009	2313	9882	10099	13446	13446					0.06814309450692235
MLVEMACNQY	10	Unmodified	_MLVEMACNQY_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2561447936	2	601.256145	1200.49774	0.22055	0.00013261	4.9645	0.0029849	5.185	0.0031175	601.2589419980521	33.527	0.16895	33.525	33.452	33.621	-0.0018501	1191	43	0.90387505	0.02573073	0.9023556	366.19238	0	10.424438						123	8	2	NaN	NaN	NaN	0.5081	1	15832	15832		19.118	7.948	1	16851	+		17010	9676	9883	10100	13447	13447					-0.09449230486097804
MLVEMWLS	8	Unmodified	_MLVEMWLS_					0	0	0			REV__ENST00000540269.6_1_16:84778391-84778577:+|nuORF	REV__ENST00000540269.6_1_16:84778391-84778577:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4892867019001	1	1008.48929	1007.48201	1.6074	0.001621	-6.3609	-0.0064149	-4.7536	-0.0047939	1008.4826085847196	24.55	0.33772	24.538	24.441	24.779	-0.012394	264	115	1.4624695	0.06757438	1.46095	296.89767	0	13.718353						619	15	2	NaN	NaN	NaN	0.62311	1	8702	8702		23.85	0.51602	1	99645	+		17011	12693	9884	10101	13448	13448					-0.021431489408087145
MLVLRTEAWIE	11	Unmodified	_MLVLRTEAWIE_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.24796232853333	3	454.247962	1359.72206	0.76281	0.0003465	-5.1076	-0.0023201	-4.3448	-0.0019736	454.57977282824396	20.549	0.096287	20.549	20.525	20.622	0	1467	37	0.7339432	0.022275686	0.7339432	445.423	0	13.51889						83	5	2	NaN	NaN	NaN	0.65755	1	19680	19680		7.4554	0.88823	1	8479.5	+		17012	10428	9885	10102	13449	13449					0.05658543931053828
MLVLRTEAWIE	11	Unmodified						0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	454.247962	1359.72206	0.76281	0.0003465	-5.1076	-0.0023201	-4.3448	-0.0019736	454.57977282824396	20.549	0.096287	20.549	20.525	20.622	0	1467	37	0.7339432	0.022275686	0.7339432	445.423		13.51889	-0.029191	0.00091671	0.00075972	NaN	7.4554	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8479.5	+		17013	10428	9885	10102							0.05658543931053828
MLVLRTEAWIE	11	Unmodified						0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	454.247962	1359.72206	1.2383	0.00056248	-6.8038	-0.0030906	-5.5655	-0.0025281	454.24444161962714	20.622	0.096411	20.608	20.559	20.656	-0.014088	1467	28	0.7339432	0.016707659	0.7324238	445.42303		10.139709	0.029191	-0.0013948	-0.00075972	NaN	7.4554	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5705.8	+		17014	10428	9885	10102							0.05658543931053828
MLYQQIND	8	Unmodified	_MLYQQIND_					0	0	0			REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7420421134	2	512.742042	1023.46953	2.2851	0.0011717	6.5137	0.0033398	8.7988	0.0045115	512.7457850930055	23.103	0.12055	23.103	23.079	23.2	0	1308	67	0.83204526	0.04061365	0.83204526	337.7533	0	16.486328						118	6	2	NaN	NaN	NaN	0.83211	1	9490	9490		4.9097	1.7564	1	9872.1	+		17015	9607	9886	10103	13450	13450					-0.04126469079506023
MLYQQIND	8	Unmodified						0	0	0			REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.742042	1023.46953	2.2851	0.0011717	6.5137	0.0033398	8.7988	0.0045115	512.7457850930055	23.103	0.12055	23.103	23.079	23.2	0	1308	67	0.83204526	0.04061365	0.83204526	337.7533		16.486328	0.07931	-0.0013229	-0.0010858	NaN	4.9097	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9872.1	+		17016	9607	9886	10103							-0.04126469079506023
MLYQQIND	8	Unmodified						0	0	0			REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	REV__RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.742042	1023.46953	1.4906	0.00076428	9.4039	0.0048218	10.895	0.0055861	512.7471167622443	22.958	0.072294	22.945	22.945	23.017	-0.01354	1302	52	0.8357362	0.031381547	0.8342168	339.25156		12.73877	-0.07931	0.001641	0.0010858	NaN	4.9097	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7753.5	+		17017	9607	9886	10103							-0.04126469079506023
MMAQWTHFART	11	Unmodified	_MMAQWTHFART_					0	0	0		nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	nc|ENSG00000172828|Q6UWW8-2|CES3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.54975836463325	3	460.549758	1378.62745	0.20377	9.3844E-05	-3.3642	-0.0015494	-3.1604	-0.0014555	460.5493030655246	35.337	0.096485	35.337	35.289	35.385	0	1365	28	0.7969414	0.016644359	0.7969414	483.58932	0	10.099915						75	5	3	NaN	NaN	NaN	0.74155	1	19878	19878		1.8502	0.16965	1	4590.6			17018	4857	9887	10104	13451	13451					-0.046722930919486316
MMDEEISVI	9	Unmodified	_MMDEEISVI_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7433931716	2	533.743393	1065.47223	1.7313	0.0009241	-8.5696	-0.004574	-6.8383	-0.0036499	534.2390601741857	29.28	0.12064	29.28	29.232	29.353	0	1332	103	0.8172735	0.06273943	0.8172735	331.58344	0	25.45459						389	6	4	NaN	NaN	NaN	0.36492	1	11355	11355		15.175	0	1	44505			17019	107	9888	10105	13452	13452					-0.05788381736874726
MMNYFKQH	8	Unmodified	_MMNYFKQH_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.74660456255	2	549.746605	1097.47866	1.4828	0.00081519	4.0637	0.002234	5.5466	0.0030492	549.7491982428068	24.164	0.096474	24.151	24.127	24.224	-0.012749	1083	127	0.9699114	0.07687646	0.96839195	393.365	0	31.17865						432	5	3	NaN	NaN	NaN	0.84887	1	12391	12391		0.32989	0.054495	1	76671	+		17020	10700	9889	10106	13453	13453					-0.06618398994828567
MMNYFKQH	8	Unmodified						0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.746605	1097.47866	1.2961	0.00071252	3.6867	0.0020267	4.9828	0.0027393	549.7485266401576	24.14	0.0966	24.14	24.116	24.213	0	1080	133	0.9717421	0.08052868	0.9717421	394.10745		32.65985	-0.0055736	-0.00019191	0.0016751	NaN	0.32989	495	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76070	+		17021	10700	9889	10106							-0.06618398994828567
MMNYFKQH	8	Unmodified						0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.746605	1097.47866	1.4828	0.00081519	4.0637	0.002234	5.5466	0.0030492	549.7491982428068	24.164	0.096474	24.151	24.127	24.224	-0.012749	1083	127	0.9699114	0.07687646	0.96839195	393.365		31.17865	0.0055736	0.00022266	-0.0016751	NaN	0.32989	432	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76671	+		17022	10700	9889	10106							-0.06618398994828567
MMPYKSSN	8	Unmodified	_MMPYKSSN_					0	0	0		tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.21206325345	2	479.212063	956.409574	1.7679	0.0008472	-2.167	-0.0010384	-0.39908	-0.00019124	479.21126560893157	23.151	0.1929	23.138	23.065	23.258	-0.013294	1317	37	0.8265074	0.022155285	0.82498795	335.8173	0	9.001892						139	9	3	NaN	NaN	NaN	0.75561	1	7105	7105		15.175	1.4383	1	15388			17023	13829	9890	10107	13454	13454					-0.07037483014380541
MNEDAAQKS	9	Unmodified	_MNEDAAQKS_					0	0	0		nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4305858491	1	993.430586	992.423309	2.0703	0.0020567	6.8922	0.0068469	8.9625	0.0089036	993.4378559778877	19.396	0.11997	19.396	19.372	19.492	0	255	46	1.4678029	0.026666999	1.4678029	298.04138	0	5.414795						109	6	2	NaN	NaN	NaN	0.23112	1	8296	8296		23.334	1.4994	1	8856.8			17024	28	9891	10108	13455	13455					-0.07320533981601329
MNIPGSNQSSA	11	Unmodified	_MNIPGSNQSSA_					0	0	0		nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2507626025001	2	553.250763	1104.48697	0.94751	0.00052421	-8.4259	-0.0046616	-7.4784	-0.0041374	553.2464484545433	34.106	0.024151	34.105	34.08	34.105	-0.0012474	1269	109	0.8560222	0.06627214	0.85450274	347.1479	0	26.875732						138	2	2	NaN	NaN	NaN	0.69656	1	12666	12666		7.6826	0.14222	1	24979			17025	5271	9892	10109	13456	13456					-0.06109173544496116
MNIPGSNQSSA	11	Unmodified						0	0	0		nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.250763	1104.48697	0.75099	0.00041548	-12.114	-0.0067019	-11.363	-0.0062864	553.2446466907668	34.107	0.04834	34.107	34.059	34.107	0	1272	115	0.854179	0.06994635	0.854179	346.40045		28.365784	0.001237	-0.0015544	-0.00016187	NaN	7.6826	210	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27228			17026	5271	9892	10109							-0.06109173544496116
MNIVTEIDD	9	Unmodified	_MNIVTEIDD_					0	0	0			REV__ENSG00000258484|ENST00000310673|SPESP1	REV__ENSG00000258484|ENST00000310673|SPESP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.4819527175998	1	1049.48195	1048.47468	1.4639	0.0015363	-5.28	-0.0055412	-3.8161	-0.0040049	1049.4769861703887	30.993	0.096537	30.988	30.964	31.06	-0.0050716	108	61	1.5546752	0.03537357	1.5531558	315.44983	0	7.177429						117	5	2	NaN	NaN	NaN	0.58159	1	10339	10339		6.2502	0.78436	1	10859	+		17027	11387	9893	10110	13457	13457					-0.04762210007561407
MNKLGHNEL	9	Unmodified	_MNKLGHNEL_					0	0	0		nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2687583904001	2	528.268758	1054.52296	1.0604	0.00056017	7.845	0.0041443	8.9054	0.0047045	528.2730529929554	26.456	0.1689	26.445	26.421	26.59	-0.011137	1266	49	0.85786515	0.029489279	0.8563457	348.09827	0	11.965942						172	8	3	NaN	NaN	NaN	0.2345	1	10611	10611		23.118	5.3186	1	23222			17028	8016	9894	10111	13458	13458					-0.002116715769716393
MNKLGHNEL	9	Unmodified						0	0	0		nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.268758	1054.52296	1.764	0.00093187	4.7014	0.0024836	6.4655	0.0034155	528.2717758190599	26.456	0.12066	26.456	26.432	26.553	0	1269	61	0.8560222	0.036861658	0.8560222	347.35046		14.957428	0.0057147	-0.0017831	-0.00016177	NaN	23.118	140	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21940			17029	8016	9894	10111							-0.002116715769716393
MNLLSFLLCV	10	Unmodified	_MNLLSFLLCV_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8114131573001	2	576.811413	1151.60827	0.98475	0.00056802	-1.3821	-0.00079719	-0.39732	-0.00022918	576.810769957589	27.88	0.16896	27.87	27.846	28.015	-0.009552	1167	61	0.91857195	0.03672248	0.9170525	372.32614	0	14.884796						186	8	2	NaN	NaN	NaN	0.71736	1	14363	14363		6.8632	0	1	39608			17030	4388	9895	10112	13459	13459					0.03853357564457838
MNRQIEIT	8	Unmodified	_MNRQIEIT_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5193412769	1	1004.51934	1003.51206	1.3361	0.0013421	-7.8267	-0.007862	-6.4906	-0.0065199	1004.5123485348596	27.18	0.072397	27.17	27.122	27.194	-0.010124	231	94	1.4820169	0.05504167	1.4804975	300.8821	0	11.174683						110	4	2	NaN	NaN	NaN	0.80692	1	8554	8554		8.2903	0	1	13766			17031	3582	9896	10113	13460	13460					0.010449260487234824
MNTVQARETS	10	Unmodified	_MNTVQARETS_					0	0	0		ENST00000496055.5_1_1:76256132-76256198:+|nuORF	ENST00000496055.5_1_1:76256132-76256198:+|nuORF	ENST00000496055.5_1_1:76256132-76256198:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1136.5364479041	1	1136.53645	1135.52917	2.1252	0.0024153	-6.4707	-0.0073541	-4.3455	-0.0049388	1136.5296338583053	29.498	0.072439	29.498	29.474	29.546	0	84	49	1.5688156	0.028262854	1.5688156	318.00186	0	5.728943						86	4	2	NaN	NaN	NaN	0.72369	1	14288	14288		6.4299	0.17972	1	7666.2			17032	7288	9897	10114	13461	13461					-0.03317198136119259
MNTWIQAI	8	Unmodified	_MNTWIQAI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4920638939001	1	976.492064	975.484787	2.3417	0.0022866	1.7164	0.001676	4.058	0.0039626	976.4935040267916	23.199	0.07239	23.186	23.162	23.234	-0.013294	243	49	1.4749115	0.028431177	1.473392	299.55606	0	5.774414						72	4	2	NaN	NaN	NaN	0.65542	1	7600	7600		21.835	2.6714	1	5221.4			17033	2015	9898	10115	13462	13462					-0.003935574916454243
MPADIATLL	9	Unmodified	_MPADIATLL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5121306340001	1	944.512131	943.504854	0.95208	0.00089925	0.51071	0.00048237	1.4628	0.0013816	944.5127086616259	31.573	0.16897	31.573	31.525	31.694	0	279	67	1.4535767	0.039138556	1.4535767	295.3623	0	7.9528503						323	8	4	NaN	NaN	NaN	0.030391	1	6910	6910		58.599	33.638	1	43321			17034	4201	9899	10116	13463	13463					0.03084193448307815
MPADIATLL	9	Unmodified	_MPADIATLL_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5121306340001	1	944.512131	943.504854	0.84584	0.00079891	0.48734	0.0004603	1.3332	0.0012592	944.5122750634005	31.572	0.16894	31.568	31.519	31.688	-0.0044155	276	70	1.4553556	0.040911198	1.4538362	295.7238	0	8.313019						314	8	4	NaN	NaN	NaN	0.056143	1	6772	6772		44.302	2.5178	1	45466			17035	4201	9899	10116	13464	13464					0.03084193448307815
MPAEIVVLL	9	Oxidation (M)	_M(Oxidation (M))PAEIVVLL_		M(1)PAEIVVLL		M(47)PAEIVVLL	0	0	1		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5747308908003	1	1000.57473	999.567454	1.4996	0.0015005	0.26844	0.00026859	1.768	0.0017691	1000.5750785606747	32.297	0.1207	32.297	32.249	32.37	0	192	94	1.5050892	0.05499506	1.5050892	305.58258	0	11.1657715						256	6	3	NaN	NaN	NaN	0.049695	1	8586	8586		47.04	18.374	1	26997			17036	4585	9900	10117	13465	13465		490			0.06765339516516633
MPAETIKEL	9	Unmodified	_MPAETIKEL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2757177552501	2	516.275718	1030.53688	2.0881	0.0010781	2.3412	0.0012087	4.4294	0.0022868	516.2772912358955	19.852	0.24036	19.852	19.732	19.972	0	1293	49	0.84127116	0.02951479	0.84127116	341.46732	0	11.979919						284	11	5	NaN	NaN	NaN	0.028569	1	9807	9807		60.984	30.948	1	28546			17037	2345	9901	10118	13466	13466					0.022835611314576454
MPAETIKEL	9	Unmodified						0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.275718	1030.53688	3.3409	0.0017249	-4.4907	-0.0023184	-1.1497	-0.00059358	516.2726792429709	20.068	0.048094	20.054	20.054	20.102	-0.014141	1293	28	0.84127116	0.016599417	0.8397517	341.46735		6.73761	0.10087	-0.005117	-0.00075972	NaN	60.984	27	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190.7			17038	2345	9901	10118							0.022835611314576454
MPAFIFEHI	9	Unmodified	_MPAFIFEHI_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7809703086501	2	552.78097	1103.54739	1.2708	0.00070245	-0.87169	-0.00048186	0.39907	0.0002206	552.7807110789719	29.28	0.19303	29.28	29.232	29.425	0	1185	64	0.90755045	0.038602352	0.90755045	368.04828	0	15.654816						326	9	6	NaN	NaN	NaN	0.012648	1	12988	12988		84.879	45.961	1	111130			17039	3096	9902	10119	13467	13467					-0.00024411423441961233
MPAFIFEHI	9	Unmodified	_MPAFIFEHI_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7809703086501	2	552.78097	1103.54739	1.2622	0.00069771	-0.9014	-0.00049827	0.36079	0.00019944	552.7803520561105	29.304	0.26541	29.296	29.224	29.489	-0.0077229	1185	88	0.90755045	0.053331077	0.906031	368.04828	0	21.62793						440	12	4	NaN	NaN	NaN	0.0088919	1	12641	12641		94.648	67.916	1	116600			17040	3096	9902	10119	13468	13468					-0.00024411423441961233
MPAGLVAGL	9	Unmodified	_MPAGLVAGL_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.4647865109001	1	828.464787	827.45751	1.8369	0.0015218	0.61289	0.00050776	2.4498	0.0020296	828.4646008990309	27.808	0.12063	27.808	27.76	27.881	0	459	58	1.3464937	0.034012675	1.3464937	274.1548	0	6.925171						167	6	3	NaN	NaN	NaN	0.015198	1	5116	5116		78.076	46.515	1	15591			17041	1137	9903	10120	13469	13469					0.036879589679756464
MPAGLVAGL	9	Unmodified	_MPAGLVAGL_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.4647865109001	1	828.464787	827.45751	1.045	0.00086577	0.15884	0.0001316	1.2039	0.00099736	828.4648941081928	27.832	0.096592	27.822	27.774	27.87	-0.009552	456	61	1.348284	0.035800934	1.3467646	274.51932	0	7.289276						182	5	3	NaN	NaN	NaN	0.16059	1	4995	4995		27.861	9.8262	1	17143			17042	1137	9903	10120	13470	13470					0.036879589679756464
MPAGLVAGL	9	Oxidation (M)	_M(Oxidation (M))PAGLVAGL_		M(1)PAGLVAGL		M(45)PAGLVAGL	0	0	1		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4597011330002	1	844.459701	843.452425	1.8491	0.0015615	0.20826	0.00017586	2.0573	0.0017373	844.4599147036813	25.298	0.12063	25.298	25.226	25.346	0	441	37	1.3572328	0.021471381	1.3572328	276.25574	0	4.3703613						93	6	2	NaN	NaN	NaN	0.055365	1	5308	5308		44.632	26.852	1	6022.4			17043	1137	9903	10121	13471	13471		122			0.024436551053668154
MPAGLVAGL	9	Oxidation (M)						0	0	1		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	844.459701	843.452425	1.7324	0.001463	0.23191	0.00019584	1.9643	0.0016588	844.4601449475156	25.274	0.12058	25.262	25.214	25.334	-0.012011	444	49	1.3554435	0.028628469	1.353924	275.8915		5.8271484	-0.018202	1.1503E-05	-0.0016544	NaN	44.632	87	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5632.4			17044	1137	9903	10121				122			0.024436551053668154
MPALALKGELL	11	Unmodified	_MPALALKGELL_					0	0	0		PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB;nc|ENSG00000113721|P09619-2|PDGFRB	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3439347062001	2	578.343935	1154.67332	1.4676	0.00084878	-4.0433	-0.0023384	-2.5757	-0.0014896	578.3424820831829	27.253	0.096516	27.253	27.229	27.326	0	1158	43	0.92408	0.025700212	0.92408	374.547	0	10.416779						113	5	3	NaN	NaN	NaN	0.65737	1	14985	14985		17.582	5.2751	1	15122			17045	1929	9904	10122	13472	13472					0.10216675361971284
MPALALKGELL	11	Unmodified	_MPALALKGELL_					0	0	0		PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB;nc|ENSG00000113721|P09619-2|PDGFRB	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3439347062001	2	578.343935	1154.67332	1.1234	0.00064972	-1.0304	-0.00059594	0.09299	5.378E-05	578.3430104099081	27.277	0.072372	27.267	27.242	27.315	-0.010126	1158	43	0.92408	0.025700212	0.9225606	374.54697	0	10.416748						113	4	3	NaN	NaN	NaN	0.70002	1	14489	14489		10.244	2.6561	1	12997			17046	1929	9904	10122	13473	13473					0.10216675361971284
MPALEETPF	9	Unmodified	_MPALEETPF_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.486309814	1	1034.48631	1033.47903	1.7038	0.0017625	-0.26248	-0.00027153	1.4413	0.001491	1034.4888382020886	27.712	0.048286	27.712	27.688	27.736	0	243	52	1.4749115	0.030196905	1.4749115	299.3218	0	6.128235						71	3	2	NaN	NaN	NaN	0.62619	1	9911	9911		4.4131	0	1	3968			17047	5078	9905	10123	13474	13474					-0.036367007939816176
MPANGETVTL	10	Unmodified	_MPANGETVTL_					0	0	0		ENST00000497304.6_1_1:1247871-1248066:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5030225107	1	1032.50302	1031.49575	2.009	0.0020743	-1.0428	-0.0010766	0.96622	0.00099762	1032.5019477009005	21.97	0.3135	21.97	21.874	22.187	0	255	82	1.4678029	0.04798031	1.4678029	297.88672	0	9.737488						577	14	3	NaN	NaN	NaN	0.080496	1	9838	9838		48.65	23.689	1	85422			17048	2525	9906	10124	13475	13475					-0.018741999080248206
MPANGETVTL	10	Unmodified	_MPANGETVTL_					0	0	0		ENST00000497304.6_1_1:1247871-1248066:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5030225107	1	1032.50302	1031.49575	1.3524	0.0013964	-0.49587	-0.00051199	0.85653	0.00088437	1032.5024296006852	21.97	0.2168	21.956	21.884	22.101	-0.013895	255	88	1.4678029	0.051534295	1.4662834	297.88672	0	10.458771						409	10	2	NaN	NaN	NaN	0.1159	1	9627	9627		43.776	8.4791	1	80712			17049	2525	9906	10124	13476	13476					-0.018741999080248206
MPANGETVTL	10	Oxidation (M)	_M(Oxidation (M))PANGETVTL_		M(1)PANGETVTL		M(58)PANGETVTL	0	0	1		ENST00000497304.6_1_1:1247871-1248066:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4979371328	1	1048.49794	1047.49066	2.2688	0.0023788	-1.047	-0.0010978	1.2218	0.001281	1048.4975727156002	19.948	0.19238	19.948	19.876	20.069	0	219	73	1.4891195	0.042610645	1.4891195	302.15198	0	8.645996						307	9	3	NaN	NaN	NaN	0.032813	1	10517	10517		58.398	32.283	1	38108			17050	2525	9906	10125	13477	13477		294			-0.031185037706336516
MPANGETVTL	10	Oxidation (M)	_M(Oxidation (M))PANGETVTL_		M(1)PANGETVTL		M(64)PANGETVTL	0	0	1		ENST00000497304.6_1_1:1247871-1248066:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	ENST00000497304.6_1_1:1247871-1248066:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.4979371328	1	1048.49794	1047.49066	1.6717	0.0017528	-0.28923	-0.00030326	1.3825	0.0014495	1048.4987398582878	19.948	0.16856	19.934	19.885	20.054	-0.014141	216	67	1.4908947	0.039051414	1.4893752	302.51218	0	7.923767						332	8	3	NaN	NaN	NaN	0.019815	1	10307	10307		63.765	37.65	1	37896			17051	2525	9906	10125	13478	13478		294			-0.031185037706336516
MPANSGLAL	9	Unmodified	_MPANSGLAL_					0	0	0		ENST00000551487.1_1_12:72005564-72007254:-|nuORF;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4498647281999	1	873.449865	872.442588	1.7389	0.0015189	-0.19362	-0.00016912	1.5453	0.0013498	873.4490101374772	23.61	0.19278	23.61	23.513	23.706	0	366	49	1.4019053	0.028552294	1.4019053	285.1964	0	5.8085327						219	9	2	NaN	NaN	NaN	0.019103	1	5698	5698		73.133	28.831	1	27720			17052	2838	9907	10126	13479	13479					0.0012646709996033678
MPANSGLAL	9	Unmodified	_MPANSGLAL_					0	0	0		ENST00000551487.1_1_12:72005564-72007254:-|nuORF;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4498647281999	1	873.449865	872.442588	1.4753	0.0012886	-0.13749	-0.00012009	1.3378	0.0011685	873.4494036544129	23.609	0.21702	23.596	23.476	23.693	-0.013048	360	52	1.405474	0.030332088	1.4039545	285.92242	0	6.1705933						264	10	3	NaN	NaN	NaN	0.0084155	1	5561	5561		95.62	51.317	1	27460			17053	2838	9907	10126	13480	13480					0.0012646709996033678
MPANSGLAL	9	Oxidation (M)	_M(Oxidation (M))PANSGLAL_		M(1)PANSGLAL		M(50)PANSGLAL	0	0	1		ENST00000551487.1_1_12:72005564-72007254:-|nuORF;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.4447793503	1	889.444779	888.437503	1.7249	0.0015342	-0.39536	-0.00035165	1.3296	0.0011826	889.4442203261427	21.44	0.14451	21.44	21.368	21.513	0	360	55	1.405474	0.032124758	1.405474	285.84253	0	6.533478						138	7	2	NaN	NaN	NaN	0.041983	1	5918	5918		50.315	13.729	1	10412			17054	2838	9907	10127	13481	13481		327			-0.011178367626484942
MPANSGLAL	9	Oxidation (M)	_M(Oxidation (M))PANSGLAL_		M(1)PANSGLAL		M(58)PANSGLAL	0	0	1		ENST00000551487.1_1_12:72005564-72007254:-|nuORF;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	ENST00000551487.1_1_12:72005564-72007254:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.4447793503	1	889.444779	888.437503	1.5424	0.0013719	3.0115	0.0026785	4.5538	0.0040504	889.4456256989581	21.416	0.14435	21.402	21.33	21.475	-0.014004	360	52	1.405474	0.030332088	1.4039545	285.8425	0	6.1688843						223	7	4	NaN	NaN	NaN	0.030696	1	5796	5796		58.2	30.411	1	14903			17055	2838	9907	10127	13482	13482		327			-0.011178367626484942
MPAPHTSITM	10	Unmodified	_MPAPHTSITM_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2595447623	2	543.259545	1084.50454	1.6489	0.00089579	-1.1422	-0.00062051	0.50673	0.00027528	543.2585681824236	19.108	0.1439	19.108	19.06	19.204	0	1278	55	0.85049206	0.033186257	0.85049206	344.9835	0	13.461243						179	7	3	NaN	NaN	NaN	0.37681	1	12156	12156		24.562	0	1	23316			17056	4564	9908	10128	13483	13483					-0.03433549543206027
MPAPHTSITM	10	Unmodified	_MPAPHTSITM_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2595447623	2	543.259545	1084.50454	1.5459	0.00083985	0.55769	0.00030297	2.1036	0.0011428	543.2600306887033	19.13	0.12019	19.116	19.092	19.212	-0.014141	1272	58	0.854179	0.035024226	0.8526596	346.47903	0	14.206818						177	6	4	NaN	NaN	NaN	0.17937	1	11840	11840		37.302	16.854	1	21030			17057	4564	9908	10128	13484	13484					-0.03433549543206027
MPAPHTSITM	10	Oxidation (M)	_MPAPHTSITM(Oxidation (M))_		MPAPHTSITM(1)		M(-81)PAPHTSITM(81)	0	0	1		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.25700207335	2	551.257002	1100.49945	1.4584	0.00080394	-3.3994	-0.001874	-1.9411	-0.00107	551.256529170579	16.062	0.16792	16.062	16.038	16.206	0	1272	58	0.854179	0.03502047	0.854179	346.41586	0	14.202698						234	8	3	NaN	NaN	NaN	0.0029037	1	12853	12853		82.96	56.845	2	31042			17058	4564	9908	10129	13485	13485		486			-0.04677853405837595
MPATVFMLF	9	Unmodified	_MPATVFMLF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5256722082	1	1056.52567	1055.5184	1.1142	0.0011771	0.48558	0.00051303	1.5997	0.0016902	1056.5257733425788	38.756	0.16817	38.756	38.684	38.852	0	117	70	1.5493695	0.04068601	1.5493695	314.346	0	8.254639						281	8	3	NaN	NaN	NaN	0.013314	1	10884	10884		82.858	26.911	1	27074			17059	1715	9909	10130	13486	13486					-0.007142720441152051
MPATVFMLF	9	Unmodified	_MPATVFMLF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5256722082	1	1056.52567	1055.5184	1.5821	0.0016715	1.9005	0.0020079	3.4826	0.0036794	1056.5274334193637	38.73	0.26429	38.734	38.638	38.902	0.0040245	117	64	1.5493695	0.037152052	1.54785	314.34598	0	7.5376587						290	12	3	NaN	NaN	NaN	0.049695	1	10657	10657		47.04	20.309	1	27626			17060	1715	9909	10130	13487	13487					-0.007142720441152051
MPATVFMLF	9	Oxidation (M)	_MPATVFM(Oxidation (M))LF_		MPATVFM(1)LF		M(-71)PATVFM(71)LF	0	0	1		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5205868302999	1	1072.52059	1071.51331	1.2701	0.0013622	0.11098	0.00011903	1.3811	0.0014812	1072.5205111065263	35.771	0.21698	35.771	35.651	35.868	0	117	67	1.5493695	0.038915038	1.5493695	314.28543	0	7.893799						239	10	3	NaN	NaN	NaN	0.014943	1	11624	11624		78.398	51.666	2	24843			17061	1715	9909	10131	13488	13488		195			-0.01958575906724036
MPATVFMLF	9	Oxidation (M)	_MPATVFM(Oxidation (M))LF_		MPATVFM(1)LF		M(-53)PATVFM(53)LF	0	0	1		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5205868302999	1	1072.52059	1071.51331	0.88278	0.0009468	0.0095182	1.0208E-05	0.8923	0.00095701	1072.5213550022142	35.77	0.19277	35.77	35.65	35.843	0.00053024	111	55	1.5529068	0.031836152	1.5513873	315.003	0	6.4578857						205	9	3	NaN	NaN	NaN	0.023074	1	11326	11326		68.108	6.1317	2	23036			17062	1715	9909	10131	13489	13489		195			-0.01958575906724036
MPCHCWCPC	9	Unmodified	_MPCHCWCPC_					0	0	0			REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.1730463284	2	540.173046	1078.33154	1.5015	0.00081106	0.9936	0.00053672	2.4951	0.0013478	540.674333059994	14.117	0.1438	14.106	14.058	14.202	-0.010672	1290	37	0.84311575	0.022133768	0.8415963	342.01602	0	8.978699						111	7	3	NaN	NaN	NaN	0.65388	1	11586	11586		3.1533	0.97701	1	7074.5	+		17063	12726	9910	10132	13490	13490					-0.20449278467299337
MPCHCWCPC	9	Unmodified						0	0	0			REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.173046	1078.33154	1.9104	0.0010319	2.5368	0.0013703	4.4472	0.0024023	540.6755180797516	14.117	0.096084	14.117	14.069	14.165	0	1290	34	0.84311575	0.020290375	0.84311575	342.016		8.2309265	0.0054418	0.00083062	0.00075972	NaN	3.1533	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5865.3	+		17064	12726	9910	10132							-0.20449278467299337
MPCHCWCPC	9	Unmodified						0	0	0			REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	REV__ENST00000548568.5_1_12:120636762-120636819:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.173046	1078.33154	1.5015	0.00081106	0.9936	0.00053672	2.4951	0.0013478	540.674333059994	14.117	0.1438	14.106	14.058	14.202	-0.010672	1290	37	0.84311575	0.022133768	0.8415963	342.01602		8.978699	-0.0054418	-0.00083658	-0.00075972	NaN	3.1533	111	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7074.5	+		17065	12726	9910	10132							-0.20449278467299337
MPDDLLTTL	9	Unmodified	_MPDDLLTTL_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5125245645	1	1018.51252	1017.50525	1.9043	0.0019396	0.053869	5.4867E-05	1.9582	0.0019944	1018.5125014025206	31.163	0.21717	31.163	31.091	31.308	0	195	100	1.5033154	0.058549285	1.5033154	305.14926	0	11.8845825						597	10	4	NaN	NaN	NaN	0.064504	1	9264	9264		55.494	18.907	1	120470			17066	2562	9911	10133	13491	13491					-0.002804316225024195
MPDDLLTTL	9	Unmodified	_MPDDLLTTL_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5125245645	1	1018.51252	1017.50525	1.6734	0.0017044	0.27495	0.00028004	1.9483	0.0019844	1018.5129218113666	31.162	0.2896	31.157	31.06	31.35	-0.0050716	192	100	1.5050892	0.058555484	1.5035697	305.50928	0	11.885834						671	13	4	NaN	NaN	NaN	0.12104	1	9086	9086		44.638	24.083	1	126210			17067	2562	9911	10133	13492	13492					-0.002804316225024195
MPDDSYMVDYF	11	Unmodified	_MPDDSYMVDYF_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.7675965494001	2	691.767597	1381.52064	1.012	0.0007001	-2.0413	-0.0014121	-1.0293	-0.00071202	691.7665842815782	31.091	0.28959	31.091	31.018	31.308	0	1101	67	0.95892316	0.0403077	0.95892316	387.91537	0	16.305756						414	13	4	NaN	NaN	NaN	0.18551	1	19901	19901		31.675	21.315	1	54438			17068	3322	9912	10134	13493	13493					-0.1548593288760003
MPDDSYMVDYF	11	Unmodified	_MPDDSYMVDYF_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.7675965494001	2	691.767597	1381.52064	1.0544	0.00072939	-2.9593	-0.0020472	-1.9049	-0.0013178	691.7657734464216	31.089	0.26548	31.084	30.988	31.253	-0.0050716	1095	61	0.9625867	0.03663546	0.96106726	389.3974	0	14.820221						522	12	4	NaN	NaN	NaN	0.18551	1	18968	18968		31.675	20.505	1	61765			17069	3322	9912	10134	13494	13494					-0.1548593288760003
MPDDSYMVDYF	11	2 Oxidation (M)	_M(Oxidation (M))PDDSYM(Oxidation (M))VDYF_		M(1)PDDSYM(1)VDYF		M(45)PDDSYM(45)VDYF	0	0	2		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.7625111715001	2	707.762511	1413.51047	1.551	0.0010977	-1.1058	-0.00078262	0.44525	0.00031513	707.7619025101453	26.432	0.26548	26.432	26.336	26.601	0	1080	73	0.9717421	0.043938875	0.9717421	393.01288	0	17.770721						538	12	4	NaN	NaN	NaN	0.068415	1	20168	20168		45.165	22.079	1	49448			17070	3322	9912	10135	13495	13495		368;369			-0.17974540612840428
MPDDSYMVDYF	11	2 Oxidation (M)	_M(Oxidation (M))PDDSYM(Oxidation (M))VDYF_		M(1)PDDSYM(1)VDYF		M(58)PDDSYM(58)VDYF	0	0	2		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.7625111715001	2	707.762511	1413.51047	1.1999	0.00084922	-0.019554	-1.384E-05	1.1803	0.00083538	707.7623919257761	26.432	0.26544	26.421	26.3	26.566	-0.011137	1074	76	0.9754029	0.045777023	0.97388345	394.49347	0	18.51416						373	12	2	NaN	NaN	NaN	0.027106	1	19211	19211		58.2	36.429	1	49338			17071	3322	9912	10135	13496	13496		368;369			-0.17974540612840428
MPDEEFRFNF	10	Unmodified	_MPDEEFRFNF_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.289887763	2	666.289888	1330.56522	1.6665	0.0011104	-2.3458	-0.001563	-0.67923	-0.00045256	666.2883192325039	27.639	0.28955	27.639	27.567	27.857	0	1125	82	0.9442611	0.049503207	0.9442611	382.129	0	20.033264						459	13	4	NaN	NaN	NaN	0.60059	1	19257	19257		14.854	0	1	55676			17072	5262	9913	10136	13497	13497					-0.0868374095928175
MPDEEFRFNF	10	Unmodified	_MPDEEFRFNF_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.289887763	2	666.289888	1330.56522	1.379	0.00091883	-3.6525	-0.0024336	-2.2734	-0.0015148	666.2874118684213	27.639	0.3137	27.629	27.508	27.822	-0.009552	1125	82	0.9442611	0.049497902	0.94274163	382.129	0	20.031097						506	14	5	NaN	NaN	NaN	0.013488	1	18398	18398		66.786	47.45	1	52972			17073	5262	9913	10136	13498	13498					-0.0868374095928175
MPDEEFRFNFF	11	Unmodified	_MPDEEFRFNFF_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.8240947211	2	739.824095	1477.63364	0.89093	0.00065913	-1.7841	-0.0013199	-0.89312	-0.00066075	739.8230467030132	31.549	0.2655	31.549	31.452	31.718	0	1056	70	0.9863805	0.042065024	0.9863805	398.76547	0	17.005676						477	12	5	NaN	NaN	NaN	1.7761E-07	1	20506	20506		97.846	77.158	1	63771			17074	5262	9914	10137	13499	13499					-0.08607496379431723
MPDEEFRFNFF	11	Oxidation (M)	_M(Oxidation (M))PDEEFRFNFF_		M(1)PDEEFRFNFF		M(130)PDEEFRFNFF	0	0	1		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	747.82155203215	2	747.821552	1493.62855	1.3758	0.0010288	-0.83214	-0.00062229	0.54365	0.00040655	747.8203230205901	30.487	0.19307	30.487	30.439	30.632	0	1059	79	0.98455137	0.047538996	0.98455137	397.98648	0	19.216736						308	9	3	NaN	NaN	NaN	5.4978E-16	1	20561	20561		125.8	104.03	1	40908			17075	5262	9914	10138	13500	13500		548			-0.09851800242040554
MPDEEFRFNFF	11	Oxidation (M)	_M(Oxidation (M))PDEEFRFNFF_		M(1)PDEEFRFNFF		M(100)PDEEFRFNFF	0	0	1		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.82155203215	2	747.821552	1493.62855	1.2306	0.00092029	-1.2712	-0.0009506	-0.040538	-3.0316E-05	747.8201432627792	30.486	0.28957	30.48	30.408	30.698	-0.0057545	1056	79	0.9863805	0.047528684	0.9848611	398.72586	0	19.212585						364	13	4	NaN	NaN	NaN	1.0166E-07	1	19552	19552		100.42	86.956	1	43062			17076	5262	9914	10138	13501	13501		548			-0.09851800242040554
MPDENIFLF	9	Unmodified	_MPDENIFLF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;ENST00000562041.1_1_16:29874076-29874319:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.5285089796998	1	1125.52851	1124.52123	1.0607	0.0011938	-0.38596	-0.00043441	0.67473	0.00075942	1126.530924209096	34.998	0.21713	34.998	34.926	35.143	-4.5776E-05	63	58	1.5811787	0.033553362	1.5796592	320.54556	0	6.802124						254	10	3	NaN	NaN	NaN	0.084037	1	13434	13434		38.131	18.846	1	19473			17077	1446	9915	10139	13502	13502					-0.03604725385616803
MPDENIFLF	9	Unmodified						0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;ENST00000562041.1_1_16:29874076-29874319:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1125.52851	1124.52123	1.4164	0.0015942	-1.3433	-0.0015119	0.073146	8.2328E-05	1125.5281152139696	34.999	0.19291	34.999	34.927	35.12	0	63	52	1.5811787	0.030014992	1.5811787	320.54556		6.084839	0.00074486	-0.00066841	0.00075972	NaN	38.131	160	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15831			17078	1446	9915	10139							-0.03604725385616803
MPDENIFLF	9	Oxidation (M)	_M(Oxidation (M))PDENIFLF_		M(1)PDENIFLF		M(55)PDENIFLF	0	0	1		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT;ENST00000563893.5_1_16:29874076-29874319:-|nuORF;ENST00000564296.5_1_16:29872547-29874223:-|nuORF;ENST00000562041.1_1_16:29874076-29874319:-|nuORF	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1141.5234236017998	1	1141.52342	1140.51615	1.1299	0.0012898	2.1183	0.002418	3.2482	0.0037079	1141.5261718533595	33.334	0.19305	33.331	33.283	33.476	-0.0024757	69	67	1.5776473	0.038853288	1.5761279	319.77524	0	7.8752136						251	9	3	NaN	NaN	NaN	0.032826	1	13992	13992		55.413	29.298	1	20215			17079	1446	9915	10140	13503	13503		163			-0.048490292482256336
MPDEPVEA	8	Unmodified	_MPDEPVEA_					0	0	0		ENSG00000169925|ENST00000303407|BRD3;BRD3|p.K414R|1|0.16|ENSG00000169925|chr9:134041926-134041926|T/C|missense_variant;nc|ENSG00000169925|Q15059-2|BRD3	ENSG00000169925|ENST00000303407|BRD3	ENSG00000169925|ENST00000303407|BRD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.3815103915	1	887.38151	886.374234	2.4485	0.0021728	-1.2159	-0.0010789	1.2327	0.0010938	887.3803563910161	18.602	0.095959	18.588	18.54	18.636	-0.014059	501	34	1.3214091	0.019725204	1.3198897	268.7551	0	4.01178						69	5	2	NaN	NaN	NaN	0.75561	1	5762	5762		15.175	6.8851	1	4628.4			17080	4703	9916	10141	13504	13504					-0.07349822270543882
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.23385294055	2	494.233853	986.453153	2.3837	0.0011781	-2.1895	-0.0010821	0.19425	9.6007E-05	494.2331487013928	27.929	0.41021	27.929	27.808	28.219	0	1278	103	0.85049206	0.06273264	0.85049206	345.4133	0	25.477844						1414	18	6	NaN	NaN	NaN	0.23746	1	8092	8092		47.04	18.374	1	890650			17081	2444	9917	10142	13505	13505					-0.04061550245603485
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.4604294145	1	987.460429	986.453153	2.0912	0.002065	1.2933	0.0012771	3.3845	0.0033421	987.461477759703	27.953	0.2413	27.953	27.857	28.098	0	246	61	1.4731345	0.035542846	1.4731345	299.14883	0	7.217682						190	11	2	NaN	NaN	NaN	0.16485	1	8094	8094		52.758	24.092	1	20506			17082	2444	9917	10142	13506	13506					-0.04061550245603485
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.23385294055	2	494.233853	986.453153	1.4628	0.00072295	-1.8554	-0.00091699	-0.3926	-0.00019404	494.23309395910104	27.952	0.43446	27.943	27.822	28.257	-0.009552	1275	103	0.85233563	0.06273264	0.8508162	346.16205	0	25.477844						1404	19	5	NaN	NaN	NaN	0.14214	1	7922	7922		55.947	27.281	1	910890			17083	2444	9917	10142	13507	13507					-0.04061550245603485
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.23385294055	2	494.233853	986.453153	1.1299	0.00055846	-0.86993	-0.00042995	0.26001	0.00012851	494.2336944875613	28.387	0.12067	28.378	28.378	28.499	-0.0089779	1278	31	0.85049206	0.01843679	0.8489726	345.4133	0	7.487793						77	6	2	NaN	NaN	NaN	0.82332	1	7923	7923		6.0903	0	1	4719.5			17084	2444	9917	10142	13508	13508					-0.04061550245603485
MPDFDLHL	8	Unmodified	_MPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.4604294145	1	987.460429	986.453153	1.3469	0.00133	-0.74786	-0.00073849	0.59902	0.00059151	987.4598576494034	27.952	0.21723	27.943	27.846	28.064	-0.009552	243	67	1.4749115	0.03909707	1.473392	299.50967	0	7.9394226						271	10	3	NaN	NaN	NaN	0.040055	1	7924	7924		82.858	38.611	1	24650			17085	2444	9917	10142	13509	13509					-0.04061550245603485
MPDFDLHL	8	Unmodified						0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.233853	986.453153	1.7964	0.00088785	2.3983	0.0011853	4.1947	0.0020732	494.23528034798625	28.363	0.096493	28.363	28.267	28.363	0	1281	49	0.84864825	0.029508412	0.84864825	344.66446		11.9843445	-0.0072256	0.0018226	-0.00016217	NaN	6.0903	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5817			17086	2444	9917	10142							-0.04061550245603485
MPDFDLHL	8	Oxidation (M)	_M(Oxidation (M))PDFDLHL_		M(1)PDFDLHL		M(78)PDFDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.2313102516	2	502.23131	1002.44807	2.4156	0.0012132	-2.5833	-0.0012974	-0.1677	-8.4224E-05	502.23019666566324	25.467	0.53078	25.467	25.25	25.781	0	1266	112	0.85786515	0.06826419	0.85786515	348.33133	0	27.718292						1268	23	4	NaN	NaN	NaN	0.050534	1	8679	8679		78.398	44.7	1	431250			17087	2444	9917	10143	13510	13510		278			-0.053058541082123156
MPDFDLHL	8	Oxidation (M)	_M(Oxidation (M))PDFDLHL_		M(1)PDFDLHL		M(110)PDFDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2313102516	2	502.23131	1002.44807	2.3191	0.0011647	-1.1544	-0.0005798	1.1647	0.00058493	502.2309680854153	25.491	0.55487	25.479	25.238	25.793	-0.012011	1266	106	0.85786515	0.06456727	0.8563457	348.3313	0	26.217163						1515	24	5	NaN	NaN	NaN	0.0092318	1	8504	8504		114.61	55.162	1	493520			17088	2444	9917	10143	13511	13511		278			-0.053058541082123156
MPDFDLNL	8	Oxidation (M)	_M(Oxidation (M))PDFDLNL_		M(1)PDFDLNL		M(44)PDFDLNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4393596214	1	980.43936	979.432083	2.0357	0.0019959	0.037464	3.6732E-05	2.0732	0.0020326	980.4391797330263	28.677	0.45854	28.677	28.508	28.967	0	255	94	1.4678029	0.055117726	1.4678029	298.09558	0	11.193848						764	20	3	NaN	NaN	NaN	0.27223	1	7853	7853		44.302	17.571	1	120960			17089	2444	9918	10144	13512	13512		279			-0.05845560345130707
MPDFDLNL	8	Oxidation (M)	_M(Oxidation (M))PDFDLNL_		M(1)PDFDLNL		M(55)PDFDLNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4393596214	1	980.43936	979.432083	1.6342	0.0016022	-0.20721	-0.00020316	1.427	0.001399	980.4388712328538	28.701	0.43433	28.692	28.475	28.909	-0.0083504	252	85	1.4695803	0.04977584	1.4680609	298.45654	0	10.108948						586	19	2	NaN	NaN	NaN	0.14443	1	7690	7690		55.494	16.035	1	97098			17090	2444	9918	10144	13513	13513		279			-0.05845560345130707
MPDFDLNL	8	Unmodified	_MPDFDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4444449992999	1	964.444445	963.437169	1.2425	0.0011983	1.012	0.00097599	2.2545	0.0021743	964.4459723161526	31.307	0.41027	31.302	31.229	31.639	-0.0050716	288	115	1.4482387	0.06766057	1.4467193	294.19003	0	13.744324						863	18	5	NaN	NaN	NaN	0.26796	1	7271	7271		44.638	5.7206	1	230470			17091	2444	9918	10145	13514	13514					-0.04601256482521876
MPDFDVARI	9	Unmodified	_MPDFDVARI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2656843852001	2	532.265684	1062.51682	2.3453	0.0012483	-1.4603	-0.00077728	0.885	0.00047105	532.2647693549712	25.419	0.26537	25.419	25.346	25.612	0	1254	76	0.8652351	0.046064615	0.8652351	351.05478	0	18.689941						546	12	4	NaN	NaN	NaN	0.12866	1	11222	11222		31.675	15.091	1	135440			17092	5219	9919	10146	13515	13515					-0.011941898085069624
MPDFDVARI	9	Unmodified	_MPDFDVARI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.P1209S|1|0.23|ENSG00000181222|chr17:7509103-7509103|C/T|missense_variant;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2656843852001	2	532.265684	1062.51682	1.5948	0.00084888	-0.52116	-0.0002774	1.0737	0.00057148	532.265047840998	25.443	0.28953	25.431	25.334	25.624	-0.012011	1254	79	0.8652351	0.047909796	0.86371565	351.05478	0	19.438568						514	13	3	NaN	NaN	NaN	0.030696	1	10969	10969		58.2	30.411	1	137610			17093	5219	9919	10146	13516	13516					-0.011941898085069624
MPDFLEKLHM	10	Unmodified	_MPDFLEKLHM_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.8753600119333	3	420.87536	1259.60425	1.235	0.00051978	-1.2876	-0.00054191	-0.052571	-2.2126E-05	420.8744796943922	27.133	0.12067	27.133	27.06	27.181	0	1362	34	0.79879075	0.020343125	0.79879075	485.16534	0	12.355896						83	6	2	NaN	NaN	NaN	0.63397	1	17988	17988		10.204	6.8993	1	7100.7			17094	956	9920	10147	13517	13517					-0.015167319292686443
MPDFLEKLHM	10	Unmodified						0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	420.87536	1259.60425	1.2708	0.00053485	0.037775	1.5898E-05	1.3086	0.00055075	420.8752998452442	27.204	0.14478	27.194	27.074	27.218	-0.010126	1362	28	0.79879075	0.01664257	0.7972713	485.1653		10.108276	0.030746	0.000766	-0.00075972	NaN	10.204	66	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4678.1			17095	956	9920	10147							-0.015167319292686443
MPDGEAAL	8	Unmodified	_MPDGEAAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3603810189001	1	803.360381	802.353105	2.0027	0.0016089	-2.0581	-0.0016534	-0.055435	-4.4535E-05	803.3586787770649	20.045	0.21627	20.045	19.948	20.165	0	531	61	1.3034686	0.035892606	1.3034686	265.53018	0	7.3117065						206	10	2	NaN	NaN	NaN	0.10499	1	4771	4771		63.31	44.026	1	16523			17096	5691	9921	10148	13518	13518					-0.05597787579404212
MPDGEAAL	8	Unmodified	_MPDGEAAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3603810189001	1	803.360381	802.353105	1.7188	0.0013809	0.71978	0.00057824	2.4386	0.0019591	803.3606466772317	20.044	0.2167	20.03	19.934	20.15	-0.014141	528	58	1.3052634	0.034099817	1.303744	265.8958	0	6.946472						183	10	2	NaN	NaN	NaN	0.30832	1	4681	4681		41.46	23.68	1	14855			17097	5691	9921	10148	13519	13519					-0.05597787579404212
MPDGPVAL	8	Unmodified	_MPDGPVAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4018519031	1	799.401852	798.394575	1.6513	0.00132	-0.80683	-0.00064498	0.84445	0.00067505	799.4014120567452	24.381	0.28945	24.381	24.261	24.55	0	537	70	1.2998781	0.041291952	1.2998781	264.82086	0	8.4122925						390	13	3	NaN	NaN	NaN	0.12449	1	4732	4732		59.445	35.595	1	55822			17098	5678;276	9922	10149	13520	13520					-0.012686068200764566
MPDGPVAL	8	Unmodified	_MPDGPVAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.4018519031	1	799.401852	798.394575	1.5903	0.0012713	-0.6151	-0.00049171	0.97517	0.00077955	799.4019409428589	24.381	0.24144	24.368	24.272	24.513	-0.012749	534	67	1.3016734	0.039494514	1.300154	265.1866	0	8.046112						368	11	4	NaN	NaN	NaN	0.12449	1	4642	4642		59.445	28.654	1	51564			17099	5678;276	9922	10149	13521	13521					-0.012686068200764566
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.8079133406501	2	625.807913	1249.60127	1.8323	0.0011466	-1.6333	-0.0010221	0.19898	0.00012452	625.8076322424661	24.213	0.36204	24.213	24.092	24.454	0	1137	88	0.9369253	0.053210318	0.9369253	379.41272	0	21.54779						1021	16	6	NaN	NaN	NaN	5.357E-12	1	17767	17767		114.78	64.823	1	518810			17100	2143	9923	10150	13522	13522					-0.01354283782393395
MPDGQFKDISL	11	Unmodified	_MPDGQFKDISL_					0	0	0		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.8079133406501	2	625.807913	1249.60127	1.6514	0.0010335	-2.2018	-0.0013779	-0.55033	-0.0003444	625.8072149000476	24.212	0.38612	24.199	24.079	24.465	-0.012749	1137	115	0.9369253	0.06976527	0.93540585	379.41272	0	28.251831						963	17	5	NaN	NaN	NaN	4.0371E-08	1	17014	17014		102.5	69.071	1	473100			17101	2143	9923	10150	13523	13523					-0.01354283782393395
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(68)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8053706517001	2	633.805371	1265.59619	2.1127	0.0013391	-2.864	-0.0018152	-0.75131	-0.00047618	633.8040363110662	22.38	0.3133	22.38	22.308	22.621	0	1143	100	0.9332562	0.060549676	0.9332562	377.87473	0	24.51651						892	14	5	NaN	NaN	NaN	0.01107	1	18118	18118		68.251	32.728	1	246610			17102	2143	9923	10151	13524	13524		246			-0.025985876450249634
MPDGQFKDISL	11	Oxidation (M)	_M(Oxidation (M))PDGQFKDISL_		M(1)PDGQFKDISL		M(83)PDGQFKDISL	0	0	1		ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	ENSG00000117450|ENST00000319248|PRDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8053706517001	2	633.805371	1265.59619	1.7143	0.0010865	-1.9583	-0.0012412	-0.24401	-0.00015465	633.8045770177972	22.404	0.31312	22.39	22.294	22.607	-0.013733	1143	100	0.9332562	0.060549676	0.93173677	377.8747	0	24.51651						930	14	5	NaN	NaN	NaN	0.00018284	1	17318	17318		83.165	38	1	248090			17103	2143	9923	10151	13525	13525		246			-0.025985876450249634
MPDHTDVSL	9	Unmodified	_MPDHTDVSL_					0	0	0		STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.73167439234993	2	507.731674	1013.4488	2.33	0.001183	-2.6133	-0.0013269	-0.28335	-0.00014387	507.72951735292685	18.676	0.095921	18.676	18.58	18.676	0	1305	55	0.83389086	0.03322214	0.83389086	338.5469	0	13.487701						160	5	3	NaN	NaN	NaN	0.094712	1	9106	9106		36.586	12.736	1	14256			17104	3143	9924	10152	13526	13526					-0.057390594591765876
MPDHTDVSL	9	Unmodified	_MPDHTDVSL_					0	0	0		STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.73167439234993	2	507.731674	1013.4488	2.2113	0.0011227	0.27815	0.00014123	2.4894	0.001264	507.7313577979635	18.724	0.12	18.724	18.724	18.844	0	1314	58	0.8283535	0.035069704	0.8283535	336.29883	0	14.237762						146	6	2	NaN	NaN	NaN	0.094712	1	9108	9108		36.586	12.736	1	15436			17105	3143	9924	10152	13527	13527					-0.057390594591765876
MPDHTDVSL	9	Unmodified						0	0	0		STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant;ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	507.731674	1013.4488	1.5672	0.00079573	-0.38022	-0.00019305	1.187	0.00060268	507.73115370683763	18.722	0.16797	18.708	18.588	18.756	-0.014059	1311	64	0.83019954	0.038761258	0.8286801	337.04828		15.736481	-0.0083643	-0.0002299	0.00016327	NaN	36.586	198	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25682			17106	3143	9924	10152							-0.057390594591765876
MPDHVIPEI	9	Unmodified	_MPDHVIPEI_					0	0	0		nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;DHX40-VMP1|1|fusion;DHX40-VMP1|2|fusion	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.76805989865	2	525.76806	1049.52157	1.298	0.00068243	-2.7345	-0.0014377	-1.4366	-0.00075531	525.7669156213899	24.213	0.21723	24.213	24.14	24.357	0	1305	79	0.83389086	0.047956467	0.83389086	338.391	0	19.460602						364	10	4	NaN	NaN	NaN	0.10956	1	10610	10610		34.439	9.4778	1	56610			17107	7922	9925	10153	13528	13528					-0.001213056657661582
MPDHVIPEI	9	Unmodified						0	0	0		nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;DHX40-VMP1|1|fusion;DHX40-VMP1|2|fusion	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.76806	1049.52157	1.2635	0.00066432	-2.044	-0.0010747	-0.7805	-0.00041036	525.7665455342446	24.236	0.19307	24.224	24.151	24.344	-0.012747	1305	88	0.83389086	0.05348122	0.8323714	338.391		21.702545	0.0055431	0.00038008	-0.00075972	NaN	34.439	372	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55334			17108	7922	9925	10153							-0.001213056657661582
MPDHVIPEI	9	Oxidation (M)	_M(Oxidation (M))PDHVIPEI_		M(1)PDHVIPEI		M(61)PDHVIPEI	0	0	1		nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;DHX40-VMP1|1|fusion;DHX40-VMP1|2|fusion	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7655172097	2	533.765517	1065.51648	2.0062	0.0010708	-3.0711	-0.0016393	-1.065	-0.00056845	533.7638824370916	22.091	0.16887	22.091	22.019	22.187	0	1296	58	0.8394264	0.035046935	0.8394264	340.57108	0	14.219208						204	8	3	NaN	NaN	NaN	0.028349	1	11363	11363		61.271	30.48	1	23414			17109	7922	9925	10154	13529	13529		642			-0.013656095283749892
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.72586073295	2	482.725861	963.437169	1.2722	0.00061414	-3.0478	-0.0014713	-1.7756	-0.00085712	482.7241193711597	30.994	0.2896	30.994	30.897	31.187	0	1311	79	0.83019954	0.04802394	0.83019954	337.28256	0	19.510529						659	13	4	NaN	NaN	NaN	0.3042	1	7420	7420		41.785	10.223	1	101680			17110	2444	9926	10155	13530	13530					-0.04601256482499139
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4444449993001	1	964.444445	963.437169	1.2935	0.0012475	-0.42252	-0.0004075	0.871	0.00084003	964.4446376644319	31.018	0.26546	31.018	30.873	31.139	0	291	142	1.446459	0.08368111	1.446459	293.82852	0	16.998688						719	12	4	NaN	NaN	NaN	0.042688	1	7422	7422		81.699	39.382	1	195460			17111	2444	9926	10155	13531	13531					-0.04601256482499139
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.72586073295	2	482.725861	963.437169	1.8753	0.00090526	-2.9162	-0.0014077	-1.0409	-0.00050245	482.7243388272698	30.969	0.31378	30.964	30.867	31.181	-0.0050716	1308	79	0.83204526	0.048018694	0.8305259	338.03244	0	19.508423						700	14	3	NaN	NaN	NaN	0.49126	1	7268	7268		31.561	6.6	1	124580			17112	2444	9926	10155	13532	13532					-0.04601256482499139
MPDIDFNL	8	Unmodified	_MPDIDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4444449993001	1	964.444445	963.437169	1.4526	0.0014009	-0.68395	-0.00065963	0.76865	0.00074132	964.4440230623102	30.993	0.19311	30.988	30.867	31.06	-0.0050716	288	121	1.4482387	0.07124448	1.4467193	294.19003	0	14.472351						608	9	5	NaN	NaN	NaN	0.039823	1	7270	7270		82.96	27.467	1	178980			17113	2444	9926	10155	13533	13533					-0.04601256482499139
MPDIDFNL	8	Oxidation (M)	_M(Oxidation (M))PDIDFNL_		M(1)PDIDFNL		M(71)PDIDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4393596214002	1	980.43936	979.432083	2.2798	0.0022352	-0.22753	-0.00022308	2.0523	0.0020122	980.4390992178552	28.243	0.45845	28.243	28.001	28.46	0	270	127	1.458913	0.074703336	1.458913	296.29013	0	15.171478						775	20	2	NaN	NaN	NaN	0.076044	1	7852	7852		70.6	26.297	1	158960			17114	2444	9926	10156	13534	13534		280			-0.058455603451079696
MPDIDFNL	8	Oxidation (M)	_M(Oxidation (M))PDIDFNL_		M(1)PDIDFNL		M(53)PDIDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.S4386F|1|0.15|ENSG00000124942|chr11:62521260-62521260|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4393596214002	1	980.43936	979.432083	1.6372	0.0016052	-0.02776	-2.7217E-05	1.6095	0.001578	980.4394290141239	28.218	0.41025	28.209	27.992	28.402	-0.0089779	267	121	1.4606913	0.0711385	1.4591719	296.65128	0	14.44751						528	18	2	NaN	NaN	NaN	0.16655	1	7691	7691		52.624	16.038	1	110000			17115	2444	9926	10156	13535	13535		280			-0.058455603451079696
MPDIDIDI	8	Unmodified	_MPDIDIDI_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4441106483001	1	931.444111	930.436834	1.3329	0.0012415	6.0279	0.0056146	7.3608	0.0068562	931.4501797082537	30.728	0.16893	30.728	30.656	30.825	0	324	79	1.42687	0.046348214	1.42687	289.99414	0	9.419708						217	8	2	NaN	NaN	NaN	0.35353	1	6615	6615		38.918	7.3568	1	18820			17116	13791	9927	10157	13536	13536					-0.03116676202353119
MPDIDIDI	8	Unmodified	_MPDIDIDI_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4441106483001	1	931.444111	930.436834	1.0034	0.0009346	4.6306	0.0043132	5.634	0.0052478	931.448796085198	30.703	0.16887	30.698	30.649	30.818	-0.0057564	318	67	1.4304334	0.039209366	1.428914	290.71835	0	7.9688416						237	8	2	NaN	NaN	NaN	0.11172	1	6476	6476		61.977	14.937	1	21080			17117	13791	9927	10157	13537	13537					-0.03116676202353119
MPDIIIKAL	9	Unmodified	_MPDIIIKAL_					0	0	0		ENST00000463808.1_1_16:2122597-2124590:+|nuORF;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.3068209184	2	507.306821	1012.59909	1.8294	0.00092807	-1.8509	-0.00093899	-0.021511	-1.0913E-05	507.3058948032875	27.808	0.14477	27.808	27.76	27.905	0	1287	52	0.8449601	0.031354427	0.8449601	343.0447	0	12.729584						226	7	3	NaN	NaN	NaN	0.077759	1	9097	9097		39.039	22.181	1	53104			17118	1421	9928	10158	13538	13538					0.09329332270431223
MPDIIIKAL	9	Unmodified	_MPDIIIKAL_					0	0	0		ENST00000463808.1_1_16:2122597-2124590:+|nuORF;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.3068209184	2	507.306821	1012.59909	0.92922	0.0004714	-1.7906	-0.00090838	-0.86137	-0.00043698	507.30634638241816	27.856	0.1931	27.846	27.774	27.967	-0.009552	1287	52	0.8449601	0.031354427	0.84344065	343.0447	0	12.729584						245	9	4	NaN	NaN	NaN	0.084037	1	8919	8919		38.131	12.016	1	53338			17119	1421	9928	10158	13539	13539					0.09329332270431223
MPDLDLHL	8	Unmodified	_MPDLDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.24167797265005	2	477.241678	952.468803	1.4859	0.00070912	-2.3832	-0.0011374	-0.89732	-0.00042824	477.24085449093764	27.181	0.33788	27.181	27.06	27.398	0	1287	76	0.8449601	0.046129405	0.8449601	343.33493	0	18.743896						549	15	4	NaN	NaN	NaN	0.09307	1	7146	7146		65.672	27.064	1	118630			17120	2444	9929	10159	13540	13540					-0.009332637285410783
MPDLDLHL	8	Unmodified	_MPDLDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.24167797265005	2	477.241678	952.468803	1.104	0.00052686	-1.7018	-0.00081219	-0.59788	-0.00028533	477.2409978171143	27.18	0.31374	27.17	27.098	27.411	-0.010124	1287	67	0.8449601	0.040591657	0.84344065	343.33493	0	16.493744						491	14	4	NaN	NaN	NaN	0.40747	1	7007	7007		36.036	12.186	1	112710			17121	2444	9929	10159	13541	13541					-0.009332637285410783
MPDLDLHL	8	Oxidation (M)	_M(Oxidation (M))PDLDLHL_		M(1)PDLDLHL		M(72)PDLDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.2391352837001	2	485.239135	968.463718	1.5179	0.00073656	-1.1103	-0.00053874	0.40767	0.00019782	485.23849584000953	24.454	0.19307	24.441	24.393	24.586	-0.012749	1278	58	0.85049206	0.035039425	0.8489726	345.50153	0	14.234314						244	9	3	NaN	NaN	NaN	0.071487	1	7412	7412		71.993	30.533	1	35180			17122	2444	9929	10160	13542	13542		281			-0.021775675911499093
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.73368576505	2	465.733686	929.452819	1.5382	0.00071639	-3.1856	-0.0014836	-1.6474	-0.00076725	465.7323908900964	30.004	0.38615	30.004	29.884	30.27	0	1347	58	0.8080346	0.035119116	0.8080346	328.44653	0	14.275055						476	17	3	NaN	NaN	NaN	0.39717	1	6581	6581		36.586	0	1	104710			17123	2444	9930	10161	13543	13543					-0.014729699654594697
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4600950635	1	930.460095	929.452819	2.8263	0.0026297	-1.2586	-0.0011711	1.5677	0.0014586	930.4594484552359	30.004	0.48269	30.004	29.811	30.294	0	345	184	1.4143922	0.10893142	1.4143922	287.46268	0	22.139343						1928	21	6	NaN	NaN	NaN	2.409E-06	1	6583	6583		137.62	0	1	1288800			17124	2444	9930	10161	13544	13544					-0.014729699654594697
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.73368576505	2	465.733686	929.452819	0.51398	0.00023938	-3.5038	-0.0016318	-2.9898	-0.0013925	465.7318916885269	30.004	0.41024	29.997	29.876	30.287	-0.0064106	1344	58	0.8098828	0.03511536	0.8083634	329.19778	0	14.273529						533	18	3	NaN	NaN	NaN	0.35353	1	6448	6448		38.918	0	1	158040			17125	2444	9930	10161	13545	13545					-0.014729699654594697
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.73368576505	2	465.733686	929.452819	0.19488	9.0762E-05	-1.6836	-0.00078412	-1.4888	-0.00069336	465.73237063135167	30.414	0.26541	30.407	30.335	30.6	-0.0064106	1356	52	0.8024889	0.03142917	0.8009695	326.19232	0	12.7752075						226	12	2	NaN	NaN	NaN	0.35353	1	6449	6449		38.918	0	1	30636			17126	2444	9930	10161	13546	13546					-0.014729699654594697
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4600950635	1	930.460095	929.452819	1.3515	0.0012575	-1.1201	-0.0010422	0.23139	0.0002153	930.4596882683556	30.438	0.33779	30.432	30.287	30.625	-0.0057545	336	121	1.419741	0.071320295	1.4182216	288.54974	0	14.495178						1051	15	5	NaN	NaN	NaN	0.030419	1	6450	6450		106.56	0	1	309980			17127	2444	9930	10161	13547	13547					-0.014729699654594697
MPDLDLNL	8	Unmodified	_MPDLDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4600950635	1	930.460095	929.452819	1.8147	0.0016885	-0.87469	-0.00081386	0.93998	0.00087461	930.4597915660012	29.979	0.43436	29.973	29.852	30.287	-0.0064087	345	193	1.4143922	0.11430693	1.4128729	287.46265	0	23.231873						1819	19	5	NaN	NaN	NaN	0.0022844	1	6452	6452		122.55	0	1	1183300			17128	2444	9930	10161	13548	13548					-0.014729699654594697
MPDLENRLIEL	11	Unmodified	_MPDLENRLIEL_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8553948495002	2	671.855395	1341.69624	1.7352	0.0011658	-2.9724	-0.001997	-1.2372	-0.00083123	671.8536587068991	28.291	0.16889	28.291	28.219	28.388	0	1089	61	0.96624947	0.036631525	0.96624947	390.99405	0	14.822998						336	8	5	NaN	NaN	NaN	0.0014228	1	19439	19439		77.634	37.628	1	81044			17129	4639	9931	10162	13549	13549					0.03905649688795165
MPDLENRLIEL	11	Unmodified	_MPDLENRLIEL_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8553948495002	2	671.855395	1341.69624	1.0236	0.00068768	-2.0035	-0.0013461	-0.97998	-0.0006584	671.8542523250256	28.29	0.26542	28.281	28.233	28.499	-0.0089779	1089	58	0.96624947	0.03479433	0.96473	390.99405	0	14.079559						343	12	4	NaN	NaN	NaN	0.0064469	1	18570	18570		72.747	24.745	1	75670			17130	4639	9931	10162	13550	13550					0.03905649688795165
MPDLENRLIEL	11	Oxidation (M)	_M(Oxidation (M))PDLENRLIEL_		M(1)PDLENRLIEL		M(51)PDLENRLIEL	0	0	1		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.8528521605501	2	679.852852	1357.69115	2.0819	0.0014154	-3.4253	-0.0023287	-1.3433	-0.00091327	679.8505932694841	26.288	0.26549	26.288	26.191	26.456	0	1092	55	0.9644182	0.032964826	0.9644182	390.20615	0	13.3376465						366	12	4	NaN	NaN	NaN	0.045077	1	19643	19643		51.086	21.051	1	64177			17131	4639	9931	10163	13551	13551		498			0.02661345826163597
MPDLENRVL	9	Unmodified	_MPDLENRVL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7842412791	2	543.784241	1085.55393	1.917	0.0010424	-2.2106	-0.0012021	-0.29363	-0.00015967	543.7833534394111	22.525	0.26526	22.525	22.477	22.742	0	1248	106	0.8689189	0.06447655	0.8689189	352.45367	0	26.153168						674	12	5	NaN	NaN	NaN	0.028569	1	12203	12203		60.984	13.502	1	190820			17132	5434	9932	10164	13552	13552					0.0145748173724769
MPDLENRVL	9	Unmodified	_MPDLENRVL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7842412791	2	543.784241	1085.55393	1.6154	0.00087841	-0.61164	-0.0003326	1.0037	0.00054581	543.7842315853432	22.548	0.26538	22.535	22.487	22.752	-0.01354	1251	97	0.8670771	0.05894679	0.8655577	351.7066	0	23.910156						508	12	3	NaN	NaN	NaN	0.022082	1	11892	11892		69.363	11.163	1	180930			17133	5434	9932	10164	13553	13553					0.0145748173724769
MPDLPEKL	8	Unmodified	_MPDLPEKL_					0	0	0		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.75187851820004	2	471.751879	941.489204	1.772	0.00083592	-3.205	-0.0015119	-1.433	-0.00067602	471.75056918634306	22.38	0.36159	22.38	22.284	22.645	0	1356	61	0.8024889	0.036969543	0.8024889	326.1316	0	15.024384						620	16	5	NaN	NaN	NaN	0.078718	1	6847	6847		69.782	22.301	1	288140			17134	7942	9933	10165	13554	13554					0.016119069312708234
MPDLPEKL	8	Unmodified	_MPDLPEKL_					0	0	0		nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	nc|ENSG00000130731|Q96S19-6|METTL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.75187851820004	2	471.751879	941.489204	0.55058	0.00025974	-1.4415	-0.00068001	-0.89088	-0.00042027	471.75157600858654	22.38	0.33723	22.366	22.294	22.631	-0.013733	1356	61	0.8024889	0.036973476	0.8009695	326.13156	0	15.0260315						576	15	4	NaN	NaN	NaN	0.048369	1	6710	6710		79.199	31.717	1	276380			17135	7942	9933	10165	13555	13555					0.016119069312708234
MPDLPNVGL	9	Unmodified	_MPDLPNVGL_					0	0	0		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.24950300475	2	478.249503	954.484453	1.3039	0.00062359	-3.3995	-0.0016258	-2.0956	-0.0010022	478.24768946901924	29.184	0.19308	29.184	29.136	29.329	0	1329	58	0.81912065	0.035100102	0.81912065	332.82553	0	14.261871						165	9	2	NaN	NaN	NaN	0.54912	1	7192	7192		7.5876	2.6779	1	13539			17136	286	9934	10166	13556	13556					0.005390227884959131
MPDLPNVGL	9	Unmodified	_MPDLPNVGL_					0	0	0		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.4917295429001	1	955.49173	954.484453	1.7437	0.0016661	-1.1247	-0.0010746	0.61902	0.00059147	955.490974807764	29.184	0.41022	29.184	29.063	29.474	0	306	121	1.4375578	0.07125199	1.4375578	292.05896	0	14.475769						991	18	4	NaN	NaN	NaN	0.024221	1	7194	7194		66.656	33.231	1	294000			17137	286	9934	10166	13557	13557					0.005390227884959131
MPDLPNVGL	9	Unmodified	_MPDLPNVGL_					0	0	0		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.24950300475	2	478.249503	954.484453	1.0648	0.00050923	-1.583	-0.00075705	-0.51818	-0.00024782	478.2489927822689	29.207	0.19307	29.2	29.103	29.296	-0.0077209	1332	70	0.8172735	0.04248041	0.81575406	332.07495	0	17.260681						267	9	3	NaN	NaN	NaN	0.48181	1	7047	7047		10.36	2.0699	1	23018			17138	286	9934	10166	13558	13558					0.005390227884959131
MPDLPNVGL	9	Unmodified	_MPDLPNVGL_					0	0	0		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4917295429001	1	955.49173	954.484453	1.7266	0.0016498	-1.0985	-0.0010496	0.62813	0.00060017	955.4908690983938	29.183	0.38611	29.175	29.079	29.465	-0.0077209	303	142	1.4393384	0.08371675	1.437819	292.42072	0	17.008148						976	17	4	NaN	NaN	NaN	0.017558	1	7048	7048		75.089	29.924	1	283510			17139	286	9934	10166	13559	13559					0.005390227884959131
MPDLPNVGL	9	Oxidation (M)	_M(Oxidation (M))PDLPNVGL_		M(1)PDLPNVGL		M(58)PDLPNVGL	0	0	1		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.4866441650001	1	971.486644	970.479368	2.3497	0.0022827	-0.66836	-0.0006493	1.6814	0.0016334	971.4860407646453	26.432	0.55514	26.432	26.215	26.77	0	285	76	1.4500183	0.044482708	1.4500183	294.5214	0	9.035156						623	24	2	NaN	NaN	NaN	0.030696	1	7612	7612		58.2	29.304	1	121830			17140	286	9934	10167	13560	13560		25			-0.0070528107411291785
MPDLPNVGL	9	Oxidation (M)	_M(Oxidation (M))PDLPNVGL_		M(1)PDLPNVGL		M(82)PDLPNVGL	0	0	1		nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ELP3-MYO5C|1|fusion	nc|ENSG00000134014|Q9H9T3-4|ELP3	nc|ENSG00000134014|Q9H9T3-4|ELP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.4866441650001	1	971.486644	970.479368	1.6713	0.0016237	0.15134	0.00014702	1.8227	0.0017707	971.4868351271903	26.432	0.45845	26.421	26.204	26.662	-0.011137	282	79	1.4517976	0.046269536	1.4502782	294.88278	0	9.398071						674	20	3	NaN	NaN	NaN	0.013696	1	7470	7470		81.699	44.469	1	106790			17141	286	9934	10167	13561	13561		25			-0.0070528107411291785
MPDLYHLL	8	Unmodified	_MPDLYHLL_					0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2598707258	2	501.259871	1000.50519	1.8226	0.00091362	-1.5935	-0.00079876	0.22913	0.00011486	501.25955404961826	29.956	0.072393	29.956	29.932	30.004	0	1272	61	0.854179	0.036881566	0.854179	346.8437	0	14.975952						86	4	3	NaN	NaN	NaN	0.77489	1	8608	8608		12.588	0	1	7591.2			17142	2794	9935	10168	13562	13562					0.004956131681524312
MPDLYHLL	8	Unmodified						0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.259871	1000.50519	1.0292	0.00051592	-1.6133	-0.00080869	-0.58408	-0.00029278	501.2585491636662	29.955	0.096504	29.949	29.901	29.997	-0.0064106	1269	37	0.8560222	0.022117019	0.85450274	347.59213		8.980713	-0.0036568	-7.7682E-06	0.00016187	NaN	12.588	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8578.4			17143	2794	9935	10168							0.004956131681524312
MPDLYHLLVEL	11	Unmodified	_MPDLYHLLVEL_					0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.8574062222	2	671.857406	1341.70026	0.85926	0.0005773	-2.5658	-0.0017239	-1.7065	-0.0011466	671.8558008794989	37.65	0.21658	37.65	37.578	37.795	0	1077	64	0.9735726	0.0384444	0.9735726	393.95734	0	15.55658						463	10	5	NaN	NaN	NaN	0.062807	1	19440	19440		46.588	14.912	1	77152			17144	2794	9936	10169	13563	13563					0.0430773918246814
MPDLYHLLVEL	11	Unmodified	_MPDLYHLLVEL_					0	0	0		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8574062222	2	671.857406	1341.70026	1.1329	0.00076113	-2.9244	-0.0019648	-1.7916	-0.0012037	671.8555882048312	37.672	0.24049	37.675	37.627	37.867	0.0028229	1074	58	0.9754029	0.034783065	0.97388345	394.69797	0	14.075012						422	11	4	NaN	NaN	NaN	0.0043425	1	18572	18572		74.794	39.738	1	71948			17145	2794	9936	10169	13564	13564					0.0430773918246814
MPDLYHLLVEL	11	Oxidation (M)	_M(Oxidation (M))PDLYHLLVEL_		M(1)PDLYHLLVEL		M(69)PDLYHLLVEL	0	0	1		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.85486353325	2	679.854864	1357.69517	1.4139	0.00096126	-2.3324	-0.0015857	-0.91853	-0.00062447	679.8533598581278	34.806	0.33761	34.806	34.638	34.975	0	1065	52	0.9808926	0.03110826	0.9808926	396.8717	0	12.586517						456	15	4	NaN	NaN	NaN	0.010061	1	19644	19644		69.233	35.326	1	74572			17146	2794	9936	10170	13565	13565		324			0.03063435319859309
MPDLYHLLVEL	11	Oxidation (M)	_M(Oxidation (M))PDLYHLLVEL_		M(1)PDLYHLLVEL		M(58)PDLYHLLVEL	0	0	1		ENST00000373473.5_1_20:36374873-36393614:+|nuORF;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	ENST00000373473.5_1_20:36374873-36393614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.85486353325	2	679.854864	1357.69517	1.2868	0.00087486	-1.8486	-0.0012568	-0.56175	-0.00038191	679.8533409036478	34.805	0.31335	34.804	34.636	34.949	-0.0006485	1065	58	0.9808926	0.034768105	0.97937316	396.8717	0	14.067261						484	14	5	NaN	NaN	NaN	0.026761	1	18751	18751		58.398	27.2	1	75596			17147	2794	9936	10170	13566	13566		324			0.03063435319859309
MPDNTAAQKV	10	Unmodified	_MPDNTAAQKV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.76604852595	2	537.766049	1073.51754	1.154	0.00062056	-1.6233	-0.00087297	-0.46936	-0.00025241	537.7659930094965	13.901	0.16782	13.89	13.842	14.01	-0.010672	1296	43	0.8394264	0.025828242	0.83790696	340.53867	0	10.478027						222	8	4	NaN	NaN	NaN	0.011315	1	11403	11403		69.574	42.842	1	24646			17148	1231	9937	10171	13567	13567					-0.01627395159448497
MPDNTAAQKV	10	Oxidation (M)	_M(Oxidation (M))PDNTAAQKV_		M(1)PDNTAAQKV		M(72)PDNTAAQKV	0	0	1		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.763505837	2	545.763506	1089.51246	1.3433	0.00073314	-2.5437	-0.0013883	-1.2004	-0.00065511	546.2629481032956	12.222	0.16797	12.213	12.141	12.309	-0.0088415	1293	43	0.84127116	0.02582264	0.8397517	341.22357	0	10.473785						105	8	2	NaN	NaN	NaN	0.0091449	1	12060	12060		72.358	43.462	1	8407.5			17149	1231	9937	10172	13568	13568		134			-0.028716990220800653
MPDPFGSSL	9	Unmodified	_MPDPFGSSL_					0	0	0		ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4287949351002	1	950.428795	949.421518	1.9152	0.0018202	4.4753	0.0042534	6.3904	0.0060737	950.42912930255	28.267	0.193	28.267	28.219	28.412	0	339	85	1.4179583	0.049892306	1.4179583	288.0989	0	10.137054						254	9	3	NaN	NaN	NaN	0.042816	1	7061	7061		49.961	15.523	1	38655			17150	6955	9938	10173	13569	13569					-0.05521542999531448
MPDPFGSSL	9	Unmodified	_MPDPFGSSL_					0	0	0		ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4287949351002	1	950.428795	949.421518	1.1793	0.0011208	3.6143	0.0034351	4.7935	0.0045559	950.429240253707	28.266	0.1689	28.257	28.209	28.378	-0.0089779	336	82	1.419741	0.04811299	1.4182216	288.46112	0	9.775513						239	8	2	NaN	NaN	NaN	0.023828	1	6932	6932		67.154	30.568	1	38793			17151	6955	9938	10173	13570	13570					-0.05521542999531448
MPDPFGSSL	9	Oxidation (M)	_M(Oxidation (M))PDPFGSSL_		M(1)PDPFGSSL		M(47)PDPFGSSL	0	0	1		ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	ENST00000427497.3_1_17:17136120-17140292:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4237095572003	1	966.42371	965.416433	1.5395	0.0014878	0.1823	0.00017618	1.7218	0.001664	966.4236401580804	24.743	0.096512	24.743	24.695	24.791	0	333	43	1.4215236	0.02495408	1.4215236	288.75485	0	5.068939						91	5	2	NaN	NaN	NaN	0.04947	1	7483	7483		47.136	15.575	1	6550.7			17152	6955	9938	10174	13571	13571		633			-0.06765846862140279
MPDPTPFLL	9	Unmodified	_MPDPTPFLL_					0	0	0		nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5277806981999	1	1030.52778	1029.5205	1.1536	0.0011888	0.29633	0.00030537	1.4499	0.0014941	1030.5275198366717	33.48	0.26535	33.48	33.407	33.673	0	186	106	1.5086359	0.062071323	1.5086359	306.18143	0	12.597504						562	12	3	NaN	NaN	NaN	0.0081087	1	9757	9757		96.245	48.924	1	92907			17153	2206	9939	10175	13572	13572					0.006924799653461378
MPDPTPFLL	9	Unmodified	_MPDPTPFLL_					0	0	0		nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5277806981999	1	1030.52778	1029.5205	0.72817	0.0007504	0.7172	0.0007391	1.4454	0.0014895	1030.5274497304702	33.502	0.24133	33.501	33.404	33.645	-0.0018463	186	103	1.5086359	0.06029463	1.5071164	306.18143	0	12.236938						536	11	4	NaN	NaN	NaN	0.0023856	1	9561	9561		109.86	51.258	1	83778			17154	2206	9939	10175	13573	13573					0.006924799653461378
MPDPTSDEV	9	Unmodified	_MPDPTSDEV_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4084534235	1	990.408453	989.401177	2.1655	0.0021448	-1.0798	-0.0010695	1.0857	0.0010753	990.4074473307821	19.54	0.096012	19.54	19.492	19.588	0	318	49	1.4304334	0.028500795	1.4304334	290.4656	0	5.787384						147	5	3	NaN	NaN	NaN	0.10363	1	8177	8177		35.296	23.248	1	11029			17155	5610	9940	10176	13574	13574					-0.0939475845002562
MPDPTSDEV	9	Unmodified	_MPDPTSDEV_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4084534235	1	990.408453	989.401177	1.8819	0.0018638	0.04655	4.6104E-05	1.9284	0.0019099	990.4087908632009	19.539	0.09634	19.524	19.476	19.573	-0.014143	312	43	1.433996	0.024938107	1.4324765	291.18903	0	5.063965						99	5	2	NaN	NaN	NaN	0.02857	1	8011	8011		60.982	37.647	1	8936.2			17156	5610	9940	10176	13575	13575					-0.0939475845002562
MPDPWAEFHL	10	Unmodified	_MPDPWAEFHL_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.7842412791	2	621.784241	1241.55393	0.7141	0.00044402	-2.6419	-0.0016427	-1.9278	-0.0011987	621.7829094467857	31.332	0.24132	31.332	31.235	31.477	0	1092	55	0.9644182	0.032968342	0.9644182	390.5738	0	13.351654						366	11	5	NaN	NaN	NaN	0.0085408	1	17560	17560		73.133	53.969	1	80894			17157	1430	9941	10177	13576	13576					-0.057185182627563336
MPDPWAEFHL	10	Unmodified	_MPDPWAEFHL_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.7842412791	2	621.784241	1241.55393	0.54203	0.00033702	-2.7843	-0.0017312	-2.2423	-0.0013942	621.7826515931794	31.355	0.31371	31.35	31.229	31.543	-0.0050716	1089	61	0.96624947	0.036631525	0.96473	391.31543	0	14.835144						432	14	4	NaN	NaN	NaN	0.01359	1	16813	16813		66.656	54.608	1	89723			17158	1430	9941	10177	13577	13577					-0.057185182627563336
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(89)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.78169859015	2	629.781699	1257.54884	1.5555	0.00097964	-2.2536	-0.0014193	-0.69808	-0.00043964	629.7799958609094	29.232	0.28956	29.232	29.16	29.449	0	1098	130	0.960755	0.078881085	0.960755	389.03583	0	31.941101						709	13	4	NaN	NaN	NaN	0.0010171	1	17941	17941		89.256	67.485	1	80227			17159	1430	9941	10178	13578	13578		161			-0.06962822125387902
MPDPWAEFHL	10	Oxidation (M)	_M(Oxidation (M))PDPWAEFHL_		M(1)PDPWAEFHL		M(58)PDPWAEFHL	0	0	1		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.78169859015	2	629.781699	1257.54884	1.0801	0.00068021	-2.0527	-0.0012927	-0.97259	-0.00061252	629.780013001903	29.231	0.2172	29.224	29.151	29.368	-0.0077209	1095	130	0.9625867	0.07887256	0.96106726	389.77753	0	31.937653						552	10	4	NaN	NaN	NaN	0.033293	1	17172	17172		58.2	44.158	1	68754			17160	1430	9941	10178	13579	13579		161			-0.06962822125387902
MPDQFDQAVVL	11	Unmodified	_MPDQFDQAVVL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENST00000511972.1_1_5:16710938-16713441:-|nuORF	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.80791334065	2	631.807913	1261.60127	1.7817	0.0011257	-2.1504	-0.0013587	-0.36878	-0.000233	631.8066817780382	28.943	0.1931	28.943	28.894	29.087	0	1188	133	0.90571284	0.0807547	0.90571284	366.73495	0	32.69867						780	9	5	NaN	NaN	NaN	0.0043425	1	18031	18031		74.794	54.281	1	165560			17161	3519	9942	10179	13580	13580					-0.019062837824321832
MPDQFDQAVVL	11	Unmodified	_MPDQFDQAVVL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENST00000511972.1_1_5:16710938-16713441:-|nuORF	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.80791334065	2	631.807913	1261.60127	1.4017	0.00088562	-2.3271	-0.0014703	-0.92534	-0.00058464	631.8068447106916	28.966	0.19309	28.958	28.886	29.079	-0.0077229	1188	136	0.90571284	0.082594514	0.9041934	366.73495	0	33.443604						746	9	5	NaN	NaN	NaN	0.12578	1	17250	17250		37.231	14.113	1	171020			17162	3519	9942	10179	13581	13581					-0.019062837824321832
MPDQFDQAVVL	11	Oxidation (M)	_M(Oxidation (M))PDQFDQAVVL_		M(1)PDQFDQAVVL		M(54)PDQFDQAVVL	0	0	1		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENST00000511972.1_1_5:16710938-16713441:-|nuORF	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.8053706517	2	639.805371	1277.59619	1.7039	0.0010902	-1.7462	-0.0011172	-0.042247	-2.703E-05	639.8042375188388	27.132	0.19308	27.122	27.049	27.242	-0.010126	1155	91	0.92591566	0.055042148	0.9243962	374.86453	0	22.284271						365	9	2	NaN	NaN	NaN	0.03503	1	17550	17550		53.652	33.203	1	101090			17163	3519	9942	10180	13582	13582		393			-0.03150587645041014
MPDSAAALL	9	Unmodified	_MPDSAAALL_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4495303772	1	888.44953	887.442254	2.1909	0.0019465	-1.5451	-0.0013728	0.64571	0.00057368	888.4481393536595	26.456	0.16895	26.456	26.432	26.601	0	378	100	1.3947657	0.058948755	1.3947657	283.66956	0	11.989105						377	8	3	NaN	NaN	NaN	0.030391	1	5903	5903		58.599	5.8409	1	78160			17164	1575	9943	10181	13583	13583					-0.005969526198896347
MPDSAAALL	9	Unmodified						0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	888.44953	887.442254	1.6025	0.0014237	-0.09756	-8.6677E-05	1.5049	0.001337	888.4498992052543	26.456	0.21717	26.445	26.421	26.638	-0.011137	378	88	1.3947657	0.0517869	1.3932463	283.66953		10.532501	-0.0057147	0.00051733	-0.00075972	NaN	58.599	410	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77444			17165	1575	9943	10181							-0.005969526198896347
MPDSAAALL	9	Oxidation (M)	_M(Oxidation (M))PDSAAALL_		M(1)PDSAAALL		M(44)PDSAAALL	0	0	1		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4444449993	1	904.444445	903.437169	1.885	0.0017049	-0.23894	-0.00021611	1.6461	0.0014888	904.4444693705243	23.899	0.26513	23.899	23.778	24.044	0	372	70	1.3983358	0.041050553	1.3983358	284.31876	0	8.34668						336	12	3	NaN	NaN	NaN	0.056143	1	6140	6140		44.302	7.7159	1	41919			17166	1575	9943	10182	13584	13584		183			-0.018412564825098343
MPDSAAALL	9	Oxidation (M)						0	0	1		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	904.444445	903.437169	2.0533	0.0018571	-0.57357	-0.00051877	1.4798	0.0013384	904.4432541550536	23.899	0.21701	23.886	23.789	24.006	-0.01305	369	82	1.4001206	0.048205137	1.3986012	284.68167		9.801392	-0.0066209	-0.00015796	0.00013268	NaN	44.302	329	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39756			17167	1575	9943	10182				183			-0.018412564825098343
MPDSELFEL	9	Unmodified	_MPDSELFEL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4917891224	1	1080.49179	1079.48451	0.8354	0.00090265	2.298	0.002483	3.1334	0.0033856	1080.4940543777416	31.525	0.36205	31.525	31.404	31.766	0	138	91	1.5369828	0.053122282	1.5369828	311.74356	0	10.774689						650	16	4	NaN	NaN	NaN	0.036546	1	11942	11942		52.624	5.1425	1	92363			17168	5060	9944	10183	13585	13585					-0.052050220021556015
MPDSELFEL	9	Unmodified	_MPDSELFEL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.4917891224	1	1080.49179	1079.48451	1.1839	0.0012792	2.1635	0.0023377	3.3475	0.0036169	1080.494572915268	31.524	0.3379	31.519	31.423	31.761	-0.0044174	135	91	1.5387528	0.053122282	1.5372335	312.1026	0	10.774689						687	15	4	NaN	NaN	NaN	0.032764	1	11640	11640		55.494	25.895	1	91002			17169	5060	9944	10183	13586	13586					-0.052050220021556015
MPDSELFEL	9	Oxidation (M)	_M(Oxidation (M))PDSELFEL_		M(1)PDSELFEL		M(67)PDSELFEL	0	0	1		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.4867037445	1	1096.4867	1095.47943	1.4019	0.0015372	1.7872	0.0019597	3.1891	0.0034968	1096.4881568528026	29.714	0.24128	29.707	29.61	29.852	-0.0070648	123	73	1.5458313	0.042466283	1.5443119	313.4805	0	8.611755						289	11	2	NaN	NaN	NaN	0.023828	1	12306	12306		67.154	32.715	1	36036			17170	5060	9944	10184	13587	13587		531			-0.0644932586478717
MPDSGPLPLL	10	Unmodified	_MPDSGPLPLL_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5492444218	1	1039.54924	1038.54197	1.3165	0.0013686	-0.88532	-0.00092033	0.43122	0.00044828	1039.5486249634223	32.177	0.26542	32.177	32.056	32.321	0	180	100	1.5121819	0.05846858	1.5121819	306.86584	0	11.86496						389	12	2	NaN	NaN	NaN	0.019347	1	10148	10148		63.958	35.063	1	60889			17171	4068	9945	10185	13588	13588					0.024238649940798496
MPDSGPLPLL	10	Unmodified	_MPDSGPLPLL_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5492444218	1	1039.54924	1038.54197	0.79368	0.00082507	0.4777	0.0004966	1.2714	0.0013217	1039.5488593565037	32.175	0.24133	32.172	32.075	32.316	-0.0037613	177	109	1.5139546	0.063767076	1.5124352	307.2256	0	12.940186						359	11	2	NaN	NaN	NaN	0.00025126	1	9944	9944		99.986	73.254	1	61297			17172	4068	9945	10185	13589	13589					0.024238649940798496
MPDSGPLPLL	10	Oxidation (M)	_M(Oxidation (M))PDSGPLPLL_		M(1)PDSGPLPLL		M(55)PDSGPLPLL	0	0	1		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5441590439	1	1055.54416	1054.53688	1.2268	0.0012949	-0.25852	-0.00027288	0.96827	0.0010221	1055.5433479111261	30.486	0.14479	30.48	30.408	30.553	-0.0057545	186	61	1.5086359	0.03545618	1.5071164	306.0854	0	7.1936646						135	7	2	NaN	NaN	NaN	0.040041	1	10616	10616		55.413	34.858	1	20244			17173	4068	9945	10186	13590	13590		437			0.011795611314482812
MPDSLRSGEYL	11	Unmodified	_MPDSLRSGEYL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3029951382501	2	634.302995	1266.59144	1.6207	0.001028	-2.0342	-0.0012903	-0.4135	-0.00026228	634.3014299061172	21.513	0.096445	21.513	21.488	21.585	0	1128	73	0.9424274	0.044038475	0.9424274	381.5849	0	17.831024						121	5	2	NaN	NaN	NaN	0.46872	1	18143	18143		19.592	7.853	1	17250			17174	3802	9946	10187	13591	13591					-0.031194717877724543
MPDSLRSGEYL	11	Unmodified	_MPDSLRSGEYL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3029951382501	2	634.302995	1266.59144	1.622	0.0010289	-1.9726	-0.0012513	-0.3506	-0.00022239	634.3015114928893	21.513	0.14457	21.499	21.475	21.619	-0.014006	1128	70	0.9424274	0.04219669	0.94090796	381.5849	0	17.085266						185	7	3	NaN	NaN	NaN	0.49762	1	17337	17337		18.558	8.3144	1	19698			17175	3802	9946	10187	13592	13592					-0.031194717877724543
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.71803570084995	2	475.718036	949.421518	1.3651	0.00064939	-1.7002	-0.00080881	-0.33512	-0.00015942	475.7170436498722	29.232	0.31369	29.232	29.136	29.449	0	1323	79	0.8228144	0.048049927	0.8228144	334.35165	0	19.525177						611	14	4	NaN	NaN	NaN	0.43738	1	7058	7058		34.439	2.8777	1	75786			17176	2444	9947	10188	13593	13593					-0.055215429995541854
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4287949351	1	950.428795	949.421518	1.8397	0.0017485	-1.0697	-0.0010167	0.76994	0.00073177	950.4281523670473	29.232	0.36202	29.232	29.136	29.498	0	327	100	1.425088	0.058835983	1.425088	289.54755	0	11.954224						976	16	4	NaN	NaN	NaN	0.12876	1	7059	7059		58.599	19.14	1	227680			17177	2444	9947	10188	13594	13594					-0.055215429995541854
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.71803570084995	2	475.718036	949.421518	0.7833	0.00037263	-1.8871	-0.00089774	-1.1038	-0.00052511	475.7170658632157	29.256	0.28959	29.248	29.151	29.441	-0.0077229	1323	82	0.8228144	0.049889922	0.82129496	334.35165	0	20.272827						586	13	4	NaN	NaN	NaN	0.67593	1	6930	6930		20.555	1.4371	1	82525			17178	2444	9947	10188	13595	13595					-0.055215429995541854
MPDVDFNL	8	Unmodified	_MPDVDFNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4287949351	1	950.428795	949.421518	1.53	0.0014541	-1.5296	-0.0014538	0.00039955	3.7974E-07	950.4275547587189	29.256	0.41023	29.248	29.127	29.537	-0.0077229	324	103	1.42687	0.060622215	1.4253505	289.9096	0	12.317139						897	18	4	NaN	NaN	NaN	0.16655	1	6931	6931		52.624	25.892	1	208170			17179	2444	9947	10188	13596	13596					-0.055215429995541854
MPDVDFNL	8	Oxidation (M)	_M(Oxidation (M))PDVDFNL_		M(1)PDVDFNL		M(55)PDVDFNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4237095572	1	966.42371	965.416433	1.4793	0.0014297	0.72788	0.00070344	2.2072	0.0021331	966.4246293321398	26.504	0.45848	26.494	26.301	26.759	-0.010645	294	88	1.4446791	0.051627517	1.4431597	293.4585	0	10.487122						691	20	2	NaN	NaN	NaN	0.14443	1	7333	7333		55.494	29.379	1	128380			17180	2444	9947	10189	13597	13597		282			-0.06765846862163016
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.23385294055	2	470.233853	938.453153	1.8654	0.00087717	-2.5452	-0.0011968	-0.67978	-0.00031965	470.2327357000127	25.009	0.4826	25.009	24.912	25.395	0	1308	97	0.83204526	0.05910003	0.83204526	338.15903	0	24.019379						1079	21	4	NaN	NaN	NaN	0.14214	1	6780	6780		55.947	29.216	1	714340			17181	2444	9948	10190	13598	13598					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4604294145	1	939.460429	938.453153	1.5225	0.0014304	-0.2089	-0.00019625	1.3136	0.0012341	939.4608620988822	25.009	0.21718	25.009	24.936	25.153	0	324	82	1.42687	0.048092484	1.42687	289.95804	0	9.77301						304	10	3	NaN	NaN	NaN	0.202	1	6782	6782		49.833	29.384	1	30986			17182	2444	9948	10190	13599	13599					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.23385294055	2	470.233853	938.453153	1.1281	0.00053045	-1.4092	-0.00066267	-0.28117	-0.00013222	470.2332562090847	25.033	0.43425	25.021	24.9	25.334	-0.012011	1308	88	0.83204526	0.05355066	0.8305259	338.15903	0	21.764008						1018	19	5	NaN	NaN	NaN	0.09307	1	6642	6642		65.672	42.338	1	649730			17183	2444	9948	10190	13600	13600					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.23385294055	2	470.233853	938.453153	0.47516	0.00022344	1.0232	0.00048116	1.4984	0.0007046	470.2340652111594	24.357	0.096539	24.344	24.296	24.393	-0.012747	1308	37	0.83204526	0.022148132	0.8305259	338.159	0	9.001404						74	5	2	NaN	NaN	NaN	0.80692	1	6644	6644		8.2903	0.70005	1	7293.4			17184	2444	9948	10190	13601	13601					-0.018535502456074937
MPDVDLHL	8	Unmodified	_MPDVDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4604294145	1	939.460429	938.453153	1.9226	0.0018062	-0.16034	-0.00015064	1.7623	0.0016556	939.4599566844287	25.033	0.26539	25.021	24.924	25.189	-0.012011	324	76	1.42687	0.044534802	1.4253505	289.95804	0	9.050018						268	12	2	NaN	NaN	NaN	0.16485	1	6645	6645		52.758	23.16	1	26187			17185	2444	9948	10190	13602	13602					-0.018535502456074937
MPDVDLHL	8	Unmodified						0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	470.233853	938.453153	0.8802	0.0004139	-1.2202	-0.00057378	-0.34	-0.00015988	470.23256898971454	24.357	0.072393	24.357	24.309	24.381	0	1305	34	0.83389086	0.020301342	0.83389086	338.9091		8.2508545	0.0065043	-0.0012127	0.0016825	NaN	8.2903	76	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6904.1			17186	2444	9948	10190							-0.018535502456074937
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(56)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.2313102516	2	478.23131	954.448068	2.0788	0.00099417	-2.4765	-0.0011844	-0.39768	-0.00019018	478.230199860631	22.308	0.69926	22.308	22.019	22.718	0	1299	103	0.8375814	0.06278014	0.8375814	340.32666	0	25.50888						1035	30	4	NaN	NaN	NaN	0.14214	1	7187	7187		55.947	25.156	1	340350			17187	2444	9948	10191	13603	13603		283			-0.030978541082163247
MPDVDLHL	8	Oxidation (M)	_M(Oxidation (M))PDVDLHL_		M(1)PDVDLHL		M(68)PDVDLHL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.4553440366001	1	955.455344	954.448068	1.6491	0.0015756	0.78268	0.00074782	2.4317	0.0023234	955.4559313232241	22.284	0.24117	22.284	22.187	22.429	0	282	73	1.4517976	0.042714834	1.4517976	294.95212	0	8.678101						237	11	2	NaN	NaN	NaN	0.084194	1	7188	7188		68.108	23.861	1	18593			17188	2444	9948	10191	13604	13604		283			-0.030978541082163247
MPDVDLHM	8	Unmodified	_MPDVDLHM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.21206325344997	2	479.212063	956.409574	1.966	0.00094212	-3.5853	-0.0017181	-1.6194	-0.00077601	479.2102879909174	23.103	0.21685	23.103	23.031	23.248	0	1317	37	0.8265074	0.022155285	0.8265074	335.8173	0	9.001892						121	10	2	NaN	NaN	NaN	0.35353	1	7244	7244		38.918	21.138	1	16161			17189	2444	9949	10192	13605	13605					-0.0703748301439191
MPDVDLNL	8	Unmodified	_MPDVDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.H2125N|1|0.25|ENSG00000124942|chr11:62528044-62528044|G/T|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4444449992999	1	916.444445	915.437169	2.26	0.0020711	-1.009	-0.00092466	1.251	0.0011465	916.4439017892929	28.122	0.4102	28.122	28.026	28.436	0	375	115	1.3965509	0.067876935	1.3965509	283.9	0	13.798462						938	18	4	NaN	NaN	NaN	0.16655	1	6327	6327		52.624	18.185	1	272230			17190	2444	9950	10193	13606	13606					-0.023932564825145164
MPDVDLNL	8	Unmodified	_MPDVDLNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.H2125N|1|0.25|ENSG00000124942|chr11:62528044-62528044|G/T|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4444449992999	1	916.444445	915.437169	1.6141	0.0014793	-1.0608	-0.00097214	0.55335	0.00050712	916.4439214397013	28.145	0.2896	28.137	28.04	28.33	-0.0089798	372	139	1.3983358	0.08211434	1.3968164	284.26285	0	16.692749						870	13	5	NaN	NaN	NaN	0.0043418	1	6209	6209		116.74	61.242	1	266480			17191	2444	9950	10193	13607	13607					-0.023932564825145164
MPDVDLNL	8	Oxidation (M)	_M(Oxidation (M))PDVDLNL_		M(1)PDVDLNL		M(45)PDVDLNL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.H2125N|1|0.25|ENSG00000124942|chr11:62528044-62528044|G/T|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.4393596214	1	932.43936	931.432083	1.9272	0.001797	0.03183	2.9679E-05	1.9591	0.0018267	932.439474444885	25.226	0.4825	25.214	24.972	25.455	-0.012011	342	88	1.4161754	0.051715374	1.4146559	287.81613	0	10.510345						790	21	3	NaN	NaN	NaN	0.26796	1	6489	6489		44.638	19.677	1	140630			17192	2444	9950	10194	13608	13608		284			-0.036375603451233474
MPDVDLNL	8	Oxidation (M)						0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.H2125N|1|0.25|ENSG00000124942|chr11:62528044-62528044|G/T|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	932.43936	931.432083	2.1946	0.0020463	0.078358	7.3064E-05	2.273	0.0021194	932.4393008799158	25.226	0.48257	25.226	25.009	25.491	0	342	73	1.4161754	0.04280126	1.4161754	287.81613		8.6987	0.0061151	2.2854E-05	0.00075972	NaN	44.638	594	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123830			17193	2444	9950	10194				284			-0.036375603451233474
MPDVELNL	8	Unmodified	_MPDVELNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4600950635	1	930.460095	929.452819	2.089	0.0019437	-1.2687	-0.0011805	0.82029	0.00076325	930.4593748889547	30.439	0.33786	30.439	30.342	30.68	0	336	121	1.419741	0.071327806	1.419741	288.54974	0	14.496765						957	15	4	NaN	NaN	NaN	0.098732	1	6582	6582		64.55	0	1	288080			17194	2444	9951	10195	13609	13609					-0.014729699654594697
MPDVELNL	8	Unmodified	_MPDVELNL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4600950635	1	930.460095	929.452819	0.96741	0.00090014	1.1105	0.0010333	2.0779	0.0019334	930.4608444203882	28.435	0.21717	28.426	28.33	28.547	-0.0089798	360	70	1.405474	0.041020036	1.4039545	285.6501	0	8.336945						227	10	3	NaN	NaN	NaN	0.23186	1	6454	6454		47.482	15.029	1	25760			17195	2444	9951	10195	13610	13610					-0.014729699654594697
MPDVVVRSF	9	Unmodified	_MPDVVVRSF_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2760521062501	2	525.276052	1048.53755	1.8218	0.00095695	-2.1319	-0.0011199	-0.31013	-0.00016291	525.2746282282872	23.103	0.072371	23.103	23.079	23.152	0	1284	85	0.8468043	0.051662147	0.8468043	343.6354	0	20.96466						161	4	3	NaN	NaN	NaN	0.3947	1	10572	10572		13.949	7.6986	1	20053			17196	4063	9952	10196	13611	13611					0.015224005711615973
MPDVVVRSF	9	Unmodified	_MPDVVVRSF_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2760521062501	2	525.276052	1048.53755	1.4849	0.00077996	-2.9327	-0.0015405	-1.4478	-0.0007605	525.2748186849227	23.151	0.07234	23.138	23.09	23.162	-0.013294	1284	94	0.8468043	0.057188094	0.8452849	343.6354	0	23.207062						158	4	3	NaN	NaN	NaN	0.23499	1	10351	10351		23.086	14.841	1	21369			17197	4063	9952	10196	13612	13612					0.015224005711615973
MPDWFEAKL	9	Unmodified	_MPDWFEAKL_					0	0	0		TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant;ENSG00000059588|ENST00000040877|TARBP1	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7758849307501	2	568.775885	1135.53722	2.0553	0.001169	-0.14592	-8.2996E-05	1.9094	0.001086	568.7748822595598	28.122	0.21721	28.122	28.05	28.267	0	1206	109	0.894683	0.06625068	0.894683	362.70392	0	26.857971						505	10	3	NaN	NaN	NaN	0.27507	1	14294	14294		20.513	6.4717	1	60597			17198	631	9953	10197	13613	13613					-0.02513019148705098
MPDWFEAKL	9	Unmodified						0	0	0		TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant;ENSG00000059588|ENST00000040877|TARBP1	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.775885	1135.53722	0.94809	0.00053925	-2.2897	-0.0013024	-1.3417	-0.0007631	568.7741977967097	28.459	0.24129	28.451	28.403	28.644	-0.0083504	1221	58	0.885486	0.034967482	0.88396657	358.97546		14.175812	0.16438	-0.00091159	-0.0053582	NaN	20.513	227	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35635			17199	631	9953	10197							-0.02513019148705098
MPEAEENKQII	11	Unmodified	_MPEAEENKQII_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3239275456001	2	651.323928	1300.6333	2.1799	0.0014198	-2.2223	-0.0014474	-0.042433	-2.7638E-05	651.322709751329	18.364	0.16797	18.364	18.316	18.484	0	1146	55	0.93142134	0.033025324	0.93142134	377.0221	0	13.368042						319	8	4	NaN	NaN	NaN	3.6536E-07	1	18792	18792		91.484	67.083	1	46815			17200	82	9954	10198	13614	13614					-0.0049891609926362435
MPEAEENKQII	11	Unmodified	_MPEAEENKQII_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3239275456001	2	651.323928	1300.6333	1.7238	0.0011227	-3.0779	-0.0020047	-1.3541	-0.00088199	651.3225362245903	18.386	0.19209	18.372	18.324	18.516	-0.01395	1146	64	0.93142134	0.038523257	0.9299019	377.02213	0	15.593506						329	9	4	NaN	NaN	NaN	0.00024842	1	17959	17959		80.24	49.042	1	49351			17201	82	9954	10198	13615	13615					-0.0049891609926362435
MPEAEENKQII	11	Oxidation (M)	_M(Oxidation (M))PEAEENKQII_		M(1)PEAEENKQII		M(62)PEAEENKQII	0	0	1		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3213848566501	2	659.321385	1316.62822	1.5552	0.0010254	0.28636	0.0001888	1.8416	0.0012142	659.3210171406962	16.422	0.1438	16.422	16.374	16.518	0	1146	43	0.93142134	0.025689125	0.93142134	376.97397	0	10.397156						138	7	4	NaN	NaN	NaN	0.020353	1	19055	19055		62.076	42.912	1	10751			17202	82	9954	10199	13616	13616		7			-0.017432199618724553
MPEAEENKQII	11	Oxidation (M)	_M(Oxidation (M))PEAEENKQII_		M(1)PEAEENKQII		M(100)PEAEENKQII	0	0	1		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3213848566501	2	659.321385	1316.62822	1.9147	0.0012624	-1.7907	-0.0011806	0.12401	8.1761E-05	659.3204843218522	16.419	0.14384	16.406	16.382	16.526	-0.012995	1146	46	0.93142134	0.027519584	0.9299019	376.97397	0	11.1380005						120	7	2	NaN	NaN	NaN	1.1846E-07	1	18212	18212		99.85	56.075	1	13607			17203	82	9954	10199	13617	13617		7			-0.017432199618724553
MPEASGPKF	9	Unmodified	_MPEASGPKF_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.23385294055004	2	482.233853	962.453153	2.0024	0.00096561	-3.4927	-0.0016843	-1.4903	-0.00071869	482.23145793317053	17.525	0.1198	17.525	17.477	17.597	0	1359	49	0.8006399	0.02959162	0.8006399	325.27817	0	12.022278						131	6	3	NaN	NaN	NaN	0.041983	1	7396	7396		50.315	32.516	1	11351			17204	5676	9955	10200	13618	13618					-0.029575502455941205
MPEASGPKF	9	Unmodified	_MPEASGPKF_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.23385294055004	2	482.233853	962.453153	2.3163	0.001117	-2.5558	-0.0012325	-0.23947	-0.00011548	482.23310341840016	17.522	0.14399	17.508	17.46	17.604	-0.013567	1362	52	0.79879075	0.031439364	0.7972713	324.5269	0	12.772949						117	7	2	NaN	NaN	NaN	0.13602	1	7240	7240		30.61	15.597	1	13948			17205	5676	9955	10200	13619	13619					-0.029575502455941205
MPEDDVFFI	9	Unmodified	_MPEDDVFFI_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	ENSG00000139263|ENST00000320743|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	ENSG00000139263|ENST00000320743|LRIG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4968745003	1	1112.49687	1111.4896	1.2615	0.0014034	-0.23868	-0.00026554	1.0228	0.0011378	1112.4957578537649	34.035	0.096512	34.035	33.962	34.059	0	84	58	1.5688156	0.033567548	1.5688156	318.08447	0	6.805969						141	5	2	NaN	NaN	NaN	0.16171	1	13330	13330		27.789	15.529	1	21745			17206	3206;5809	9956	10201	13620	13620					-0.061687181395427615
MPEDDVFFI	9	Unmodified	_MPEDDVFFI_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	ENSG00000139263|ENST00000320743|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	ENSG00000139263|ENST00000320743|LRIG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.4968745003	1	1112.49687	1111.4896	0.78707	0.00087561	-0.62518	-0.00069551	0.16189	0.0001801	1112.496558604408	34.033	0.096539	34.032	33.96	34.056	-0.0012474	81	61	1.5705823	0.035328627	1.5690628	318.4427	0	7.1630554						191	5	3	NaN	NaN	NaN	0.062072	1	12954	12954		41.785	23.986	1	21541			17207	3206;5809	9956	10201	13621	13621					-0.061687181395427615
MPEDGQVNI	9	Unmodified	_MPEDGQVNI_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;ENST00000498649.1_1_22:21350102-21351129:+|nuORF;ENST00000463909.1_1_22:21349904-21350666:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.73167439235004	2	501.731674	1001.4488	1.3778	0.00069126	-2.1089	-0.0010581	-0.73112	-0.00036682	501.7305633666318	21.031	0.16846	21.031	20.959	21.127	0	1341	40	0.8117308	0.02402109	0.8117308	329.60315	0	9.753723						146	8	3	NaN	NaN	NaN	0.2345	1	8638	8638		23.118	11.947	1	13867			17208	1173	9957	10202	13622	13622					-0.05187059459160537
MPEDGQVNI	9	Unmodified	_MPEDGQVNI_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;ENST00000498649.1_1_22:21350102-21351129:+|nuORF;ENST00000463909.1_1_22:21349904-21350666:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4560723181002	1	1002.45607	1001.4488	1.331	0.0013343	0.97397	0.00097637	2.305	0.0023106	1002.4566000950059	21.007	0.14445	20.993	20.969	21.113	-0.014086	276	49	1.4553556	0.028464437	1.4538362	295.47748	0	5.7790527						128	7	2	NaN	NaN	NaN	0.030696	1	8469	8469		58.2	37.751	1	11043			17209	1173	9957	10202	13623	13623					-0.05187059459160537
MPEDLVEAL	9	Unmodified	_MPEDLVEAL_					0	0	0		ENST00000515235.6_1_5:118788237-118827866:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4968745002999	1	1016.49687	1015.4896	1.5568	0.0015825	0.58983	0.00059956	2.1466	0.002182	1016.4973679101861	29.376	0.21714	29.368	29.344	29.562	-0.0077229	207	76	1.496219	0.04436958	1.4946996	303.71683	0	9.006561						252	10	2	NaN	NaN	NaN	0.10956	1	9010	9010		34.439	0	1	56918			17210	2837	9958	10203	13624	13624					-0.017527181395621483
MPEDSDTYL	9	Unmodified	_MPEDSDTYL_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;ENST00000527539.1_1_11:119692129-119692348:-|nuORF;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4346681739999	1	1070.43467	1069.42739	1.9186	0.0020537	-0.80873	-0.00086569	1.1098	0.001188	1070.4339265922958	22.356	0.19281	22.356	22.284	22.477	0	165	52	1.5210435	0.030123353	1.5210435	308.54727	0	6.1105957						216	9	2	NaN	NaN	NaN	0.016254	1	11517	11517		76.739	46.129	1	27057			17211	5782;2360	9959	10204	13625	13625					-0.10454489278549772
MPEDSDTYL	9	Unmodified	_MPEDSDTYL_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;ENST00000527539.1_1_11:119692129-119692348:-|nuORF;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4346681739999	1	1070.43467	1069.42739	1.0463	0.00112	0.78373	0.00083893	1.83	0.0019589	1070.4358272210509	22.38	0.24077	22.366	22.27	22.511	-0.013733	162	52	1.5228153	0.030120134	1.5212959	308.90668	0	6.109955						269	11	2	NaN	NaN	NaN	0.018156	1	11233	11233		74.332	55.214	1	30911			17212	5782;2360	9959	10204	13626	13626					-0.10454489278549772
MPEDSDTYL	9	Oxidation (M)	_M(Oxidation (M))PEDSDTYL_		M(1)PEDSDTYL		M(65)PEDSDTYL	0	0	1		ENSG00000123136|ENST00000242776|DDX39A;ENST00000527539.1_1_11:119692129-119692348:-|nuORF;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.4295827960998	1	1086.42958	1085.42231	1.7342	0.0018841	-0.64116	-0.00069657	1.093	0.0011875	1086.4292019192417	20.165	0.19222	20.165	20.093	20.285	0	198	49	1.5015416	0.028383017	1.5015416	304.5341	0	5.7564697						185	9	2	NaN	NaN	NaN	0.025843	1	12188	12188		64.55	30.852	1	15355			17213	5782;2360	9959	10205	13627	13627		268			-0.11698793141158603
MPEDSDTYL	9	Oxidation (M)	_M(Oxidation (M))PEDSDTYL_		M(1)PEDSDTYL		M(53)PEDSDTYL	0	0	1		ENSG00000123136|ENST00000242776|DDX39A;ENST00000527539.1_1_11:119692129-119692348:-|nuORF;ENST00000587730.5_1_19:14519750-14520297:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.4295827960998	1	1086.42958	1085.42231	1.4319	0.0015557	-0.86366	-0.0009383	0.56825	0.00061737	1086.4287605252784	20.164	0.24066	20.15	20.102	20.343	-0.014143	195	49	1.5033154	0.028379917	1.501796	304.89383	0	5.7558594						195	11	2	NaN	NaN	NaN	0.036546	1	11878	11878		52.624	25.892	1	15284			17214	5782;2360	9959	10205	13628	13628		268			-0.11698793141158603
MPEFMANLRL	10	Unmodified	_MPEFMANLRL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.3095689601	2	611.309569	1220.60458	1.0786	0.00065937	-1.1703	-0.00071539	-0.091637	-5.6018E-05	611.8105022375865	29.232	0.26543	29.232	29.112	29.377	0	1152	76	0.92775106	0.0458858	0.92775106	375.7951	0	18.586517						592	12	5	NaN	NaN	NaN	0.50283	1	16996	16996		19.336	4.161	1	100230			17215	5034	9960	10206	13629	13629					0.0031068779060205998
MPEFMANLRL	10	Unmodified	_MPEFMANLRL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.3095689601	2	611.309569	1220.60458	0.66776	0.00040821	-3.1808	-0.0019445	-2.513	-0.0015362	611.3068633146889	29.207	0.2172	29.2	29.103	29.32	-0.0077209	1158	94	0.92408	0.05692911	0.9225606	374.3081	0	23.059723						341	10	4	NaN	NaN	NaN	0.15916	1	16313	16313		39.039	26.99	1	47754			17216	5034	9960	10206	13630	13630					0.0031068779060205998
MPEFVNAAF	9	Unmodified	_MPEFVNAAF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.4760794786998	1	1025.47608	1024.4688	1.3097	0.0013431	0.61072	0.00062628	1.9204	0.0019694	1025.4770465237266	29.231	0.072378	29.224	29.2	29.272	-0.0077209	204	55	1.4979934	0.031947732	1.496474	304.04132	0	6.484314						80	4	2	NaN	NaN	NaN	0.27507	1	9362	9362		20.513	6.0883	1	12723			17217	2970	9961	10207	13631	13631					-0.04245263728569171
MPEFVNAAF	9	Unmodified						0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1025.47608	1024.4688	1.8389	0.0018857	2.2515	0.0023089	4.0904	0.0041946	1026.4807189429405	29.232	0.072411	29.232	29.184	29.256	0	207	55	1.496219	0.031947732	1.496219	303.68118		6.484314	0.0042402	0.000604	-0.00012748	NaN	20.513	95	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11704			17218	2970	9961	10207							-0.04245263728569171
MPEILKTEL	9	Unmodified	_MPEILKTEL_					0	0	0		ENSG00000146670|ENST00000275517|CDCA5	ENSG00000146670|ENST00000275517|CDCA5	ENSG00000146670|ENST00000275517|CDCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2991928515501	2	537.299193	1072.58383	1.0332	0.00055512	-3.452	-0.0018547	-2.4188	-0.0012996	537.7980664696132	24.767	0.19296	24.755	24.658	24.851	-0.012392	1230	64	0.8799654	0.03866917	0.878446	356.9885	0	15.6875						124	9	2	NaN	NaN	NaN	0.13196	1	11378	11378		31.198	6.636	1	14643			17219	3570	9962	10208	13632	13632					0.050444206825886795
MPEISVEVL	9	Unmodified	_MPEISVEVL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7702682366	2	508.770268	1015.52598	1.6876	0.00085862	-4.072	-0.0020717	-2.3843	-0.0012131	508.7677323835924	30.366	0.072405	30.366	30.342	30.415	0	1290	49	0.84311575	0.02951479	0.84311575	342.2827	0	11.982239						77	4	2	NaN	NaN	NaN	0.31737	1	9197	9197		17.799	2.3363	1	7291.9			17220	1453	9963	10209	13633	13633					0.018841587571614582
MPEISVEVL	9	Unmodified	_MPEISVEVL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5332600066	1	1016.53326	1015.52598	2.2511	0.0022883	-0.24912	-0.00025324	2.0019	0.002035	1016.5328340105774	30.366	0.14478	30.366	30.342	30.487	0	204	115	1.4979934	0.06748116	1.4979934	304.07687	0	13.697968						256	7	2	NaN	NaN	NaN	0.023074	1	9199	9199		68.108	29.19	1	55912			17221	1453	9963	10209	13634	13634					0.018841587571614582
MPEISVEVL	9	Unmodified	_MPEISVEVL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5332600066	1	1016.53326	1015.52598	1.4437	0.0014675	0.32746	0.00033287	1.7711	0.0018004	1016.5334835512933	30.366	0.24131	30.359	30.311	30.552	-0.0064106	201	112	1.4997677	0.06569493	1.4982482	304.43704	0	13.335358						255	11	2	NaN	NaN	NaN	0.011942	1	9025	9025		87.021	42.718	1	54660			17222	1453	9963	10209	13635	13635					0.018841587571614582
MPEISVEVL	9	Unmodified						0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.770268	1015.52598	0.84461	0.00042971	-0.68931	-0.0003507	0.15531	7.9015E-05	508.76978333406964	30.366	0.072376	30.359	30.335	30.407	-0.0064106	1284	64	0.8468043	0.038731933	0.8452849	343.78015		15.724121	-0.0036995	0.0014896	0.0010846	NaN	17.799	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12383			17223	1453	9963	10209							0.018841587571614582
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2678927231501	2	515.267893	1028.52123	2.6126	0.0013462	-0.27792	-0.0001432	2.3347	0.001203	515.2667369587713	18.053	0.26387	18.053	17.981	18.245	0	1323	103	0.8228144	0.06271905	0.8228144	333.98447	0	25.457977						558	12	3	NaN	NaN	NaN	0.057383	1	9717	9717		43.776	20.441	1	107420			17224	3870	9964	10210	13636	13636					0.00811274614420654
MPEKEPSVL	9	Unmodified	_MPEKEPSVL_					0	0	0		ENST00000495415.5_1_10:99221527-99223714:-|nuORF;nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	ENST00000495415.5_1_10:99221527-99223714:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2678927231501	2	515.267893	1028.52123	2.0279	0.0010449	-1.7002	-0.00087603	0.32776	0.00016888	515.2669202636678	18.122	0.26404	18.108	17.988	18.252	-0.013948	1326	100	0.8209676	0.060884297	0.81944823	333.23483	0	24.713226						600	12	4	NaN	NaN	NaN	0.024359	1	9519	9519		66.481	29.179	1	108490			17225	3870	9964	10210	13637	13637					0.00811274614420654
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.53907663633333	3	365.539077	1093.5954	1.9721	0.00072089	-2.4793	-0.00090629	-0.50719	-0.0001854	365.5380124872348	17.693	0.21574	17.693	17.573	17.789	0	1488	52	0.7209441	0.03158295	0.7209441	438.60205	0	19.214142						212	10	3	NaN	NaN	NaN	0.12328	1	12573	12573		28.495	17.53	1	26623			17226	4986	9965	10211	13638	13638					0.05234662496582132
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.8049767212001	2	547.804977	1093.5954	1.8344	0.0010049	-2.3247	-0.0012735	-0.49031	-0.00026859	547.8040387538045	17.693	0.19176	17.693	17.549	17.741	0	1197	55	0.9001988	0.03309667	0.9001988	365.10788	0	13.423523						269	9	4	NaN	NaN	NaN	0.030696	1	12574	12574		58.2	22.903	1	48171			17227	4986	9965	10211	13639	13639					0.05234662496582132
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.8049767212001	2	547.804977	1093.5954	1.8804	0.0010301	-1.5065	-0.00082529	0.37389	0.00020482	547.8041642554405	17.786	0.2637	17.772	17.628	17.892	-0.013786	1200	85	0.89836043	0.051511586	0.896841	364.36224	0	20.892365						354	12	4	NaN	NaN	NaN	0.04743	1	12246	12246		48.002	17.392	1	60995			17228	4986	9965	10211	13640	13640					0.05234662496582132
MPELVQHKL	9	Unmodified	_MPELVQHKL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.53907663633333	3	365.539077	1093.5954	2.0528	0.00075039	-0.87805	-0.00032096	1.1748	0.00042942	365.5389214610263	17.786	0.19186	17.772	17.7	17.892	-0.013786	1485	49	0.72280174	0.029723525	0.7212823	439.73218	0	18.082916						209	9	3	NaN	NaN	NaN	0.089764	1	12247	12247		27.046	17.435	1	24515			17229	4986	9965	10211	13641	13641					0.05234662496582132
MPELVQHKL	9	Oxidation (M)	_M(Oxidation (M))PELVQHKL_		M(1)PELVQHKL		M(40)PELVQHKL	0	0	1		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.8024340322501	2	555.802434	1109.59032	1.1438	0.00063571	-3.1422	-0.0017465	-1.9985	-0.0011107	555.8006576164933	14.933	0.072086	14.933	14.909	14.981	0	1191	40	0.90387505	0.023894131	0.90387505	366.53314	0	9.689392						101	4	3	NaN	NaN	NaN	0.070055	1	13270	13270		40.154	24.978	1	13062			17230	4986	9965	10212	13642	13642		521			0.03990358633973301
MPEPFVENQ	9	Unmodified	_MPEPFVENQ_					0	0	0			REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF	REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.74732445655	2	545.747324	1089.4801	2.043	0.001115	5.6515	0.0030843	7.6945	0.0041993	545.750268770584	17.954	0.047916	17.94	17.916	17.964	-0.013786	1275	49	0.85233563	0.029498875	0.8508162	345.7115	0	11.964905						76	3	2	NaN	NaN	NaN	0.14787	1	12054	12054		28.896	1.5994	1	9134.4	+		17231	9240	9966	10213	13643	13643					-0.06106486425073854
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.76498589345005	2	493.764986	985.515419	1.4181	0.00070023	-0.85262	-0.000421	0.56551	0.00027923	493.7644890306542	29.353	0.12065	29.353	29.305	29.425	0	1323	64	0.8228144	0.038773835	0.8228144	334.17685	0	15.747559						198	6	3	NaN	NaN	NaN	0.29681	1	8068	8068		19.118	2.26	1	23768			17232	5653	9967	10214	13644	13644					0.022081761027379798
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5226953203002	1	986.522695	985.515419	2.1693	0.00214	-0.58853	-0.0005806	1.5807	0.0015594	986.5218152326818	29.353	0.24135	29.353	29.305	29.546	0	198	151	1.5015416	0.08879113	1.5015416	304.92145	0	18.031006						901	11	4	NaN	NaN	NaN	1.2958E-07	1	8069	8069		136.74	62.408	1	299180			17233	5653	9967	10214	13645	13645					0.022081761027379798
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.76498589345005	2	493.764986	985.515419	0.68019	0.00033586	-1.7879	-0.00088282	-1.1077	-0.00054696	493.76398913671073	29.352	0.14477	29.344	29.296	29.441	-0.0077209	1326	79	0.8209676	0.047992766	0.81944823	333.42682	0	19.49173						252	7	3	NaN	NaN	NaN	0.094712	1	7894	7894		36.586	6.9881	1	41656			17234	5653	9967	10214	13646	13646					0.022081761027379798
MPEPTVLSL	9	Unmodified	_MPEPTVLSL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5226953203002	1	986.522695	985.515419	1.8193	0.0017948	-0.21175	-0.0002089	1.6076	0.0015859	986.5217570340672	29.352	0.19304	29.344	29.296	29.489	-0.0077209	195	136	1.5033154	0.07989085	1.501796	305.28168	0	16.223602						747	9	4	NaN	NaN	NaN	0.00020136	1	7897	7897		116.74	36.097	1	267850			17235	5653	9967	10214	13647	13647					0.022081761027379798
MPEPTVLSL	9	Oxidation (M)	_M(Oxidation (M))PEPTVLSL_		M(1)PEPTVLSL		M(50)PEPTVLSL	0	0	1		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.7624432045001	2	501.762443	1001.51033	1.3453	0.00067502	-3.1819	-0.0015965	-1.8366	-0.00092152	502.2613565197939	27.06	0.07242	27.06	27.012	27.084	0	1320	91	0.824661	0.05537027	0.824661	334.85318	0	22.483063						189	4	3	NaN	NaN	NaN	0.043119	1	8651	8651		49.833	24.872	1	21492			17236	5653	9967	10215	13648	13648		576			0.009638722401291488
MPEPTVLSL	9	Oxidation (M)	_M(Oxidation (M))PEPTVLSL_		M(1)PEPTVLSL		M(58)PEPTVLSL	0	0	1		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5176099424002	1	1002.51761	1001.51033	1.563	0.0015669	-0.62908	-0.00063067	0.93391	0.00093626	1002.5177093076813	27.06	0.048279	27.06	27.012	27.06	0	216	94	1.4908947	0.055053353	1.4908947	302.69266	0	11.177368						221	3	4	NaN	NaN	NaN	0.030669	1	8654	8654		58.235	23.797	1	34491			17237	5653	9967	10215	13649	13649		576			0.009638722401291488
MPEPTVLSL	9	Oxidation (M)	_M(Oxidation (M))PEPTVLSL_		M(1)PEPTVLSL		M(77)PEPTVLSL	0	0	1		ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5176099424002	1	1002.51761	1001.51033	1.3199	0.0013232	-0.089626	-8.9851E-05	1.2302	0.0012333	1002.5174189111157	27.06	0.072433	27.049	27.001	27.074	-0.010126	216	97	1.4908947	0.056832314	1.4893752	302.69263	0	11.538544						203	4	3	NaN	NaN	NaN	0.016254	1	8481	8481		76.739	34.955	1	36174			17238	5653	9967	10215	13650	13650		576			0.009638722401291488
MPEQIVIHAL	10	Unmodified	_MPEQIVIHAL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8180840964501	2	575.818084	1149.62162	1.787	0.001029	-2.9368	-0.001691	-1.1498	-0.00066205	575.816648018617	24.888	0.1448	24.888	24.816	24.96	0	1212	85	0.8910048	0.05148375	0.8910048	361.1597	0	20.868408						309	7	4	NaN	NaN	NaN	0.02603	1	14799	14799		61.199	37.864	1	107280			17239	1354	9968	10216	13651	13651					0.05278931668067344
MPEQIVIHAL	10	Unmodified	_MPEQIVIHAL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8180840964501	2	575.818084	1149.62162	1.4269	0.00082161	-3.1942	-0.0018393	-1.7674	-0.0010177	575.8163812384425	24.888	0.14475	24.875	24.827	24.972	-0.012394	1215	85	0.8891654	0.051478148	0.88764596	360.41412	0	20.86615						314	7	4	NaN	NaN	NaN	0.0049332	1	14292	14292		77.761	54.643	1	113810			17240	1354	9968	10216	13652	13652					0.05278931668067344
MPEQIVIHAL	10	Oxidation (M)	_M(Oxidation (M))PEQIVIHAL_		M(1)PEQIVIHAL		M(67)PEQIVIHAL	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8155414075001	2	583.815541	1165.61653	2.3539	0.0013742	0.38859	0.00022687	2.7425	0.0016011	583.8151965213583	22.911	0.24095	22.911	22.814	23.055	0	1206	106	0.894683	0.06429565	0.894683	362.5916	0	26.057343						383	11	3	NaN	NaN	NaN	0.013678	1	15329	15329		66.544	41.982	1	68182			17241	1354	9968	10217	13653	13653		149			0.040346278054357754
MPEQIVVQAL	10	Unmodified	_MPEQIVVQAL_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.31009188885	2	564.310092	1126.60563	2.0642	0.0011648	-4.1587	-0.0023468	-2.0945	-0.001182	564.3073853189426	27.953	0.12062	27.953	27.929	28.05	0	1236	85	0.876284	0.05151713	0.876284	355.2788	0	20.886993						189	6	2	NaN	NaN	NaN	0.41241	1	13974	13974		23.086	2.5304	1	58612			17242	8073	9969	10218	13654	13654					0.04739225431148952
MPEQIVVQAL	10	Unmodified						0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.310092	1126.60563	1.0787	0.00060874	-2.006	-0.001132	-0.92725	-0.00052326	564.3087204819432	27.977	0.12065	27.968	27.919	28.04	-0.0089798	1236	106	0.876284	0.06437904	0.8747646	355.27878		26.101685	0.007194	0.00078622	-0.00075972	NaN	23.086	211	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55698			17243	8073	9969	10218							0.04739225431148952
MPEQWARLL	9	Oxidation (M)	_M(Oxidation (M))PEQWARLL_		M(1)PEQWARLL		M(47)PEQWARLL	0	0	1		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.3000585188	2	580.300059	1158.58556	1.829	0.0010614	-1.5139	-0.00087854	0.31509	0.00018285	580.2987333112438	24.96	0.16893	24.96	24.888	25.057	0	1194	76	0.902037	0.045970082	0.902037	365.59796	0	18.631805						210	8	2	NaN	NaN	NaN	0.048656	1	15100	15100		47.482	20.185	1	42870			17244	5193	9970	10219	13655	13655		541			0.012614744912070819
MPEQWARLL	9	Unmodified	_MPEQWARLL_					0	0	0		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3026012077501	2	572.302601	1142.59065	0.93047	0.00053251	-2.2402	-0.0012821	-1.3097	-0.00074955	572.302237909997	26.987	0.14484	26.977	26.929	27.074	-0.010126	1206	76	0.894683	0.04595518	0.89316356	362.67706	0	18.628815						401	7	5	NaN	NaN	NaN	0.024221	1	14070	14070		66.656	24.872	1	67262			17245	5193	9970	10220	13656	13656					0.02505778353815913
MPEQWARLL	9	Unmodified						0	0	0		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.302601	1142.59065	1.4718	0.00084229	-1.042	-0.00059636	0.42972	0.00024593	572.3023244511692	26.964	0.096479	26.964	26.94	27.036	0	1206	67	0.894683	0.040447116	0.894683	362.67706		16.396027	-0.0066031	0.0005834	0.00075972	NaN	66.656	271	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58486			17246	5193	9970	10220							0.02505778353815913
MPERAVFRL	9	Unmodified	_MPERAVFRL_					0	0	0		ENST00000573175.1_1_17:4451225-4453465:-|nuORF;ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENST00000573175.1_1_17:4451225-4453465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.5428210991	3	373.542821	1117.60663	1.6909	0.00063163	-1.0096	-0.00037713	0.68131	0.0002545	373.54235746850344	20.068	0.26476	20.054	19.982	20.246	-0.014141	1434	61	0.75435036	0.037081838	0.7528309	458.803	0	22.553528						377	12	4	NaN	NaN	NaN	0.12328	1	13189	13189		23.086	5.1161	1	57456			17247	2754	9971	10221	13657	13657					0.05253484590730295
MPERAVFRL	9	Unmodified						0	0	0		ENST00000573175.1_1_17:4451225-4453465:-|nuORF;ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENST00000573175.1_1_17:4451225-4453465:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	373.542821	1117.60663	1.8746	0.00070024	-2.9133	-0.0010882	-1.0387	-0.00038801	373.54188509972647	19.924	0.19238	19.924	19.876	20.069	0	1434	55	0.75435036	0.033370078	0.75435036	458.803		20.29599	-0.064799	-0.00088294	0.00075972	NaN	23.086	296	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68287			17248	2754	9971	10221							0.05253484590730295
MPESEEIAQLL	11	Unmodified	_MPESEEIAQLL_					0	0	0		ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF;ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3	ENST00000579853.5_1_17:46048512-46051060:+|nuORF	ENST00000579853.5_1_17:46048512-46051060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.3130285083	2	630.313029	1258.6115	1.4502	0.0009141	-2.2674	-0.0014292	-0.81721	-0.0005151	630.3119186168774	30.487	0.21721	30.487	30.415	30.632	0	1137	67	0.9369253	0.040359855	0.9369253	379.38306	0	16.342682						310	10	5	NaN	NaN	NaN	0.065807	1	17964	17964		45.827	23.976	1	40590			17249	1676	9972	10222	13658	13658					-0.00745720847839948
MPESEEIAQLL	11	Unmodified	_MPESEEIAQLL_					0	0	0		ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF;ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3	ENST00000579853.5_1_17:46048512-46051060:+|nuORF	ENST00000579853.5_1_17:46048512-46051060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.3130285083	2	630.313029	1258.6115	0.94088	0.00059305	-1.2234	-0.00077113	-0.28253	-0.00017808	630.3132556195288	30.486	0.21716	30.48	30.384	30.601	-0.0057545	1134	79	0.9387595	0.047703207	0.93724006	380.12576	0	19.316162						342	10	4	NaN	NaN	NaN	0.25335	1	17193	17193		27.296	14.293	1	43872			17250	1676	9972	10222	13659	13659					-0.00745720847839948
MPESGVAL	8	Unmodified	_MPESGVAL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-2|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3967665252002	1	803.396767	802.38949	2.0482	0.0016455	-1.9494	-0.0015661	0.098759	7.9343E-05	803.395681791253	21.754	0.19265	21.754	21.705	21.898	0	519	52	1.310647	0.030503869	1.310647	266.9923	0	6.2139587						224	9	3	NaN	NaN	NaN	0.45125	1	4777	4777		33.698	11.572	1	20747			17251	4767	9973	10223	13660	13660					-0.019609106826806055
MPESGVAL	8	Unmodified	_MPESGVAL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-2|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3967665252002	1	803.396767	802.38949	1.5993	0.0012849	-0.95892	-0.00077039	0.64036	0.00051446	803.3965860656668	21.778	0.1685	21.764	21.691	21.86	-0.013895	516	49	1.3124412	0.028707981	1.3109218	267.35782	0	5.848114						195	8	2	NaN	NaN	NaN	0.14214	1	4686	4686		55.947	14.487	1	21810			17252	4767	9973	10223	13661	13661					-0.019609106826806055
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.7495327945	2	510.749533	1019.48451	2.2494	0.0011489	-2.5731	-0.0013142	-0.32368	-0.00016532	510.7486162980126	22.694	0.21707	22.694	22.621	22.838	0	1311	76	0.83019954	0.046129405	0.83019954	337.02155	0	18.726349						429	10	4	NaN	NaN	NaN	0.056143	1	9339	9339		44.302	19.341	1	109280			17253	6036	9974	10224	13662	13662					-0.02445022002166297
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.4917891224001	1	1020.49179	1019.48451	3.2532	0.0033199	-2.3915	-0.0024405	0.86176	0.00087942	1020.4900761274796	22.694	0.48204	22.694	22.621	23.103	0	216	154	1.4908947	0.090639114	1.4908947	302.62018	0	18.397827						1246	21	5	NaN	NaN	NaN	0.012648	1	9340	9340		84.879	45.961	1	601490			17254	6036	9974	10224	13663	13663					-0.02445022002166297
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.7495327945	2	510.749533	1019.48451	1.2835	0.00065556	-1.5014	-0.00076684	-0.21788	-0.00011128	510.7490167928593	22.717	0.31343	22.704	22.631	22.945	-0.01354	1311	70	0.83019954	0.042443633	0.8286801	337.02155	0	17.230103						464	14	4	NaN	NaN	NaN	0.056143	1	9151	9151		44.302	18.187	1	91520			17255	6036	9974	10224	13664	13664					-0.02445022002166297
MPETTETVL	9	Unmodified	_MPETTETVL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.4917891224001	1	1020.49179	1019.48451	2.3643	0.0024128	-1.324	-0.0013511	1.0403	0.0010617	1020.4908480325892	22.717	0.33754	22.704	22.607	22.945	-0.01354	216	175	1.4908947	0.10311818	1.4893752	302.62018	0	20.930817						1241	15	5	NaN	NaN	NaN	0.011942	1	9152	9152		87.021	37.188	1	594260			17256	6036	9974	10224	13665	13665					-0.02445022002166297
MPETTETVL	9	Oxidation (M)	_M(Oxidation (M))PETTETVL_		M(1)PETTETVL		M(59)PETTETVL	0	0	1		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4867037445	1	1036.4867	1035.47943	1.913	0.0019828	-1.0436	-0.0010816	0.86944	0.00090116	1036.4857497239718	20.309	0.40872	20.309	20.189	20.597	0	219	103	1.4891195	0.06039071	1.4891195	302.19754	0	12.255524						988	18	5	NaN	NaN	NaN	0.030391	1	10003	10003		58.599	31.868	1	269150			17257	6036	9974	10225	13666	13666		611			-0.03689325864775128
MPETTETVL	9	Oxidation (M)	_M(Oxidation (M))PETTETVL_		M(1)PETTETVL		M(110)PETTETVL	0	0	1		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4867037445	1	1036.4867	1035.47943	1.7853	0.0018504	-0.46501	-0.00048198	1.3203	0.0013684	1036.4863537650851	20.309	0.38516	20.295	20.174	20.559	-0.014141	219	106	1.4891195	0.06216359	1.4876001	302.19754	0	12.615295						958	17	5	NaN	NaN	NaN	0.0023856	1	9793	9793		109.86	65.555	1	258280			17258	6036	9974	10225	13667	13667		611			-0.03689325864775128
MPETYQARL	9	Unmodified	_MPETYQARL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.776416247	2	554.776416	1107.53828	1.9686	0.0010921	-0.23669	-0.00013131	1.7319	0.00096081	554.7763647710649	18.364	0.21594	18.364	18.292	18.508	0	1224	85	0.883646	0.05155611	0.883646	358.33813	0	20.907166						256	10	2	NaN	NaN	NaN	0.2961	1	13169	13169		19.164	3.7009	1	54049			17259	1501	9975	10226	13668	13668					-0.011188047797986655
MPETYQARL	9	Unmodified	_MPETYQARL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.776416247	2	554.776416	1107.53828	2.0312	0.0011269	0.33321	0.00018486	2.3644	0.0013117	554.7771013227149	18.386	0.2641	18.372	18.228	18.492	-0.01395	1221	85	0.885486	0.05155611	0.88396657	359.08432	0	20.907166						385	12	2	NaN	NaN	NaN	0.10363	1	12796	12796		35.296	14.848	1	60902			17260	1501	9975	10226	13669	13669					-0.011188047797986655
MPETYQARL	9	Oxidation (M)	_M(Oxidation (M))PETYQARL_		M(1)PETYQARL		M(47)PETYQARL	0	0	1		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.77387355805	2	562.773874	1123.53319	1.9477	0.0010961	-0.3636	-0.00020462	1.5841	0.00089151	562.7733252920257	16.422	0.26377	16.422	16.326	16.59	0	1218	73	0.8873258	0.044176638	0.8873258	359.76743	0	17.911469						304	12	3	NaN	NaN	NaN	0.048656	1	13820	13820		47.482	25.647	1	32178			17261	1501	9975	10227	13670	13670		173			-0.023631086424074965
MPETYQARL	9	Oxidation (M)	_M(Oxidation (M))PETYQARL_		M(1)PETYQARL		M(53)PETYQARL	0	0	1		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.77387355805	2	562.773874	1123.53319	1.8481	0.00104	0.39946	0.00022481	2.2475	0.0012649	562.7745098092497	16.419	0.23969	16.406	16.334	16.574	-0.012995	1218	79	0.8873258	0.047863185	0.8858064	359.76743	0	19.406189						317	11	3	NaN	NaN	NaN	0.03618	1	13397	13397		52.78	32.331	1	33177			17262	1501	9975	10227	13671	13671		173			-0.023631086424074965
MPEVKVETI	9	Unmodified	_MPEVKVETI_					0	0	0			REV__nc|ENSG00000149636|Q9H410-3|DSN1	REV__nc|ENSG00000149636|Q9H410-3|DSN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2835427873501	2	523.283543	1044.55253	1.5279	0.00079954	-1.5087	-0.0007895	0.019186	1.004E-05	523.2829631151106	21.392	0.19269	21.392	21.344	21.537	0	1200	58	0.89836043	0.034933507	0.89836043	364.57504	0	14.176819						312	9	5	NaN	NaN	NaN	0.060816	1	10410	10410		42.318	9.8648	1	94023	+		17263	9997	9976	10228	13672	13672					0.032038476485013234
MPEVKVETI	9	Unmodified						0	0	0			REV__nc|ENSG00000149636|Q9H410-3|DSN1	REV__nc|ENSG00000149636|Q9H410-3|DSN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.283543	1044.55253	1.5279	0.00079954	-1.5087	-0.0007895	0.019186	1.004E-05	523.2829631151106	21.392	0.19269	21.392	21.344	21.537	0	1200	58	0.89836043	0.034933507	0.89836043	364.57504		14.176819	0.0069505	0.00037569	-0.00015948	NaN	42.318	312	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94023	+		17264	9997	9976	10228							0.032038476485013234
MPEVKVETI	9	Unmodified						0	0	0			REV__nc|ENSG00000149636|Q9H410-3|DSN1	REV__nc|ENSG00000149636|Q9H410-3|DSN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.283543	1044.55253	1.5176	0.00079413	-2.4446	-0.0012792	-0.92703	-0.0004851	523.2824338092637	21.392	0.19258	21.378	21.33	21.523	-0.014006	1197	58	0.9001988	0.034933507	0.8986794	365.3211		14.176819	-0.0069505	-0.00060379	0.00015948	NaN	42.318	306	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92888	+		17265	9997	9976	10228							0.032038476485013234
MPEVSIAPLL	10	Unmodified	_MPEVSIAPLL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.5961946144	1	1069.59619	1068.58892	1.0767	0.0011516	-0.13061	-0.0001397	0.94605	0.0010119	1069.5968847055133	33.262	0.096527	33.262	33.238	33.335	0	72	94	1.5758814	0.054779768	1.5758814	319.67444	0	11.112305						153	5	3	NaN	NaN	NaN	0.14791	1	11506	11506		49.961	14.665	1	15566			17266	5380	9977	10229	13673	13673					0.05736724545204197
MPEVSIAPLL	10	Unmodified	_MPEVSIAPLL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5961946144	1	1069.59619	1068.58892	0.61025	0.00065272	0.18547	0.00019838	0.79572	0.0008511	1069.5960264373532	33.261	0.072395	33.259	33.235	33.307	-0.0024757	72	64	1.5758814	0.03708923	1.5743619	319.67444	0	7.523712						149	4	3	NaN	NaN	NaN	0.12997	1	11225	11225		61.271	26.832	1	14493			17267	5380	9977	10229	13674	13674					0.05736724545204197
MPEVSVLVL	9	Unmodified	_MPEVSVLVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5590808266	1	986.559081	985.551804	1.8068	0.0017825	1.5428	0.0015221	3.3496	0.0033046	986.561142192328	32.852	0.16893	32.852	32.804	32.973	0	198	112	1.5015416	0.065653086	1.5015416	304.9213	0	13.332306						417	8	3	NaN	NaN	NaN	0.030391	1	8076	8076		58.599	27.038	1	128210			17268	538	9978	10230	13675	13675					0.05845052999438849
MPEVSVLVL	9	Unmodified	_MPEVSVLVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5590808266	1	986.559081	985.551804	1.5518	0.0015309	2.2303	0.0022003	3.7821	0.0037312	986.5610196660459	32.851	0.21715	32.848	32.8	33.017	-0.0031052	195	148	1.5033154	0.086992264	1.501796	305.2815	0	17.66568						377	10	2	NaN	NaN	NaN	0.030391	1	7906	7906		58.599	16.815	1	122980			17269	538	9978	10230	13676	13676					0.05845052999438849
MPEVSVLVL	9	Oxidation (M)	_M(Oxidation (M))PEVSVLVL_		M(1)PEVSVLVL		M(44)PEVSVLVL	0	0	1		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5539954487001	1	1002.554	1001.54672	1.2167	0.0012198	-0.60453	-0.00060608	0.6122	0.00061377	1002.5531497616448	30.245	0.072382	30.238	30.214	30.287	-0.0064106	207	94	1.496219	0.055018306	1.4946996	303.77347	0	11.170197						244	4	3	NaN	NaN	NaN	0.056143	1	8491	8491		44.302	25.184	1	37586			17270	538	9978	10231	13677	13677		51			0.04600749136830018
MPEWLNVMLQ	10	Unmodified	_MPEWLNVMLQ_					0	0	0			REV__OR2G2|p.L85M|1|0.06|ENSG00000177489|chr1:247588612-247588612|C/A|missense_variant	REV__OR2G2|p.L85M|1|0.06|ENSG00000177489|chr1:247588612-247588612|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.8753600119333	3	420.87536	1259.60425	1.2708	0.00053485	0.037775	1.5898E-05	1.3086	0.00055075	420.8752998452442	27.204	0.14478	27.194	27.074	27.218	-0.010126	1362	28	0.79879075	0.01664257	0.7972713	485.1653	0	10.108276						66	7	2	NaN	NaN	NaN	0.76548	1	17216	17216		1.5256	0.29665	1	4678.1	+		17271	13280	9979	10232	13678	13678					-0.015167319292686443
MPEWRVKATCV	11	Unmodified	_MPEWRVKATCV_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.3335753726501	2	660.333575	1318.6526	1.7003	0.0011228	-6.6082	-0.0043636	-4.9079	-0.0032409	660.3295699530987	19.828	0.16823	19.828	19.756	19.924	0	1140	52	0.93509084	0.031185508	0.93509084	378.4531	0	12.621521						196	8	3	NaN	NaN	NaN	0.47586	1	19096	19096		19.336	0	1	21540			17272	2829	9980	10233	13679	13679					0.006017617106635953
MPFDELLAL	9	Unmodified	_MPFDELLAL_					0	0	0		ENST00000586994.7_1_19:327127-336164:-|nuORF;ENSG00000105556|ENST00000264819|MIER2	ENST00000586994.7_1_19:327127-336164:-|nuORF	ENST00000586994.7_1_19:327127-336164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5383453845	1	1048.53835	1047.53107	1.8446	0.0019342	-0.4417	-0.00046314	1.4029	0.001471	1048.5373038339897	36.952	0.16838	36.952	36.904	37.072	0	123	112	1.5458313	0.06547928	1.5458313	313.65903	0	13.286163						428	8	3	NaN	NaN	NaN	0.078597	1	10529	10529		38.918	0	1	54557			17273	1547	9981	10234	13680	13680					0.009204626197742982
MPFDELLAL	9	Unmodified						0	0	0		ENST00000586994.7_1_19:327127-336164:-|nuORF;ENSG00000105556|ENST00000264819|MIER2	ENST00000586994.7_1_19:327127-336164:-|nuORF	ENST00000586994.7_1_19:327127-336164:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1048.53835	1047.53107	1.3437	0.0014089	0.52806	0.00055369	1.8717	0.0019626	1048.5389523624522	36.95	0.16816	36.952	36.904	37.072	0.0022507	120	106	1.5476005	0.061939836	1.5460811	314.01797		12.567993	1.7975E-05	0.00055946	0.00012485	NaN	38.918	411	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49428			17274	1547	9981	10234							0.009204626197742982
MPFDELLAL	9	Oxidation (M)	_M(Oxidation (M))PFDELLAL_		M(1)PFDELLAL		M(42)PFDELLAL	0	0	1		ENST00000586994.7_1_19:327127-336164:-|nuORF;ENSG00000105556|ENST00000264819|MIER2	ENST00000586994.7_1_19:327127-336164:-|nuORF	ENST00000586994.7_1_19:327127-336164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5332600066	1	1064.53326	1063.52598	1.1184	0.0011905	4.0583	0.0043201	5.1766	0.0055107	1064.537860729206	34.13	0.07246	34.129	34.129	34.201	-0.0012474	126	55	1.544062	0.031859875	1.5425426	313.23874	0	6.4632874						102	4	2	NaN	NaN	NaN	0.062072	1	11020	11020		41.785	23.815	1	10257			17275	1547	9981	10235	13681	13681		177			-0.0032384124283453275
MPFGFSGVL	9	Unmodified	_MPFGFSGVL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.4753511972002	1	954.475351	953.468075	0.91279	0.00087123	0.62682	0.00059828	1.5396	0.0014695	954.4761913998982	33.166	0.14477	33.166	33.118	33.262	0	282	52	1.4517976	0.030245066	1.4517976	294.95642	0	6.1447754						219	7	3	NaN	NaN	NaN	0.12945	1	7162	7162		31.561	13.762	1	23747			17276	3220	9982	10236	13682	13682					-0.010520583775928571
MPFGFSGVL	9	Unmodified	_MPFGFSGVL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.4753511972002	1	954.475351	953.468075	0.99416	0.0009489	0.15083	0.00014396	1.145	0.0010929	954.4754012937885	33.189	0.16893	33.186	33.138	33.307	-0.0024796	279	67	1.4535767	0.0391469	1.4520572	295.3179	0	7.9533386						224	8	3	NaN	NaN	NaN	0.049695	1	7019	7019		47.04	20.309	1	22514			17277	3220	9982	10236	13683	13683					-0.010520583775928571
MPFQDGQEFEL	11	Unmodified	_MPFQDGQEFEL_					0	0	0		ENSG00000105205|ENST00000221804|CLC	ENSG00000105205|ENST00000221804|CLC	ENSG00000105205|ENST00000221804|CLC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.7950029306502	2	670.795003	1339.57545	1.9433	0.0013035	-3.3412	-0.0022412	-1.3979	-0.0009377	670.793440221776	30.077	0.31377	30.077	29.932	30.246	0	1116	61	0.94976085	0.036655188	0.94976085	384.3281	0	14.832825						473	14	4	NaN	NaN	NaN	0.00017469	1	19397	19397		83.529	30.749	1	105580			17278	1518	9983	10237	13684	13684					-0.0807517802466009
MPFQDGQEFEL	11	Unmodified	_MPFQDGQEFEL_					0	0	0		ENSG00000105205|ENST00000221804|CLC	ENSG00000105205|ENST00000221804|CLC	ENSG00000105205|ENST00000221804|CLC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.7950029306502	2	670.795003	1339.57545	1.1123	0.00074611	-3.291	-0.0022076	-2.1787	-0.0014615	670.7931977377667	30.052	0.28959	30.045	29.925	30.214	-0.0064106	1113	73	0.9515937	0.043972015	0.95007426	385.0698	0	17.79364						548	13	5	NaN	NaN	NaN	2.5301E-07	1	18530	18530		95.291	50.126	1	113470			17279	1518	9983	10237	13685	13685					-0.0807517802466009
MPFRGDTVI	9	Unmodified	_MPFRGDTVI_					0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF;BAIAP2-TBCD|1|fusion	nc|ENSG00000141556|Q9BTW9-5|TBCD;BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2682270741501	2	518.268227	1034.5219	1.1651	0.00060383	-3.9182	-0.0020307	-2.7531	-0.0014268	518.2679692275805	22.018	0.21679	22.004	21.908	22.125	-0.013895	1293	52	0.84127116	0.031357765	0.8397517	341.44998	0	12.727295						277	10	4	NaN	NaN	NaN	0.10363	1	9764	9764		35.296	9.1815	1	33640			17280	3332;61	9984	10238	13686	13686					0.006021140541179193
MPFRGDTVI	9	Unmodified						0	0	0		nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF;BAIAP2-TBCD|1|fusion	nc|ENSG00000141556|Q9BTW9-5|TBCD;BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.268227	1034.5219	1.9346	0.0010027	-7.2724	-0.0037691	-5.3378	-0.0027664	518.2667123039428	21.994	0.2893	21.994	21.85	22.139	0	1293	55	0.84127116	0.033196986	0.84127116	341.45		13.473785	-0.0049745	-0.0019373	0.00075972	NaN	35.296	359	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43324			17281	3332;61	9984	10238							0.006021140541179193
MPFSAVDIL	9	Unmodified	_MPFSAVDIL_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5121306340001	1	992.512131	991.504854	1.4693	0.0014583	-0.50538	-0.0005016	0.96392	0.00095671	992.5112794571007	33.045	0.12066	33.045	33.021	33.142	0	237	76	1.4784646	0.044416666	1.4784646	300.2101	0	9.0190735						181	6	3	NaN	NaN	NaN	0.016254	1	8265	8265		76.739	26.906	1	27904			17282	7983	9985	10239	13687	13687					0.008761934483004552
MPFSGGQDSF	10	Unmodified	_MPFSGGQDSF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.4404222539001	1	1072.44042	1071.43315	1.5751	0.0016892	-0.40696	-0.00043644	1.1682	0.0012528	1072.4399067780787	24.743	0.14478	24.743	24.695	24.84	0	210	61	1.4944444	0.035505056	1.4944444	303.14435	0	7.202118						223	7	3	NaN	NaN	NaN	0.085203	1	11609	11609		48.002	26.167	1	15726			17283	2967	9986	10240	13688	13688					-0.09971345976191515
MPFSGGQDSF	10	Unmodified	_MPFSGGQDSF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.4404222539001	1	1072.44042	1071.43315	1.2558	0.0013467	0.26305	0.00028211	1.5188	0.0016289	1072.4416195980714	24.743	0.14478	24.731	24.682	24.827	-0.012394	210	61	1.4944444	0.03550887	1.4929249	303.14435	0	7.202881						178	7	2	NaN	NaN	NaN	0.75466	1	11310	11310		4.3102	0.34164	1	13691			17284	2967	9986	10240	13689	13689					-0.09971345976191515
MPFSPYEPL	9	Unmodified	_MPFSPYEPL_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5070452561	1	1080.50705	1079.49977	1.3118	0.0014174	1.1846	0.00128	2.4964	0.0026974	1080.5084605107354	29.401	0.31377	29.401	29.305	29.618	0	129	118	1.5422925	0.06905532	1.5422925	312.82047	0	14.006378						493	14	2	NaN	NaN	NaN	0.012648	1	11948	11948		84.879	54.843	1	94090			17285	2275	9987	10241	13690	13690					-0.036801104143250996
MPFSPYEPL	9	Unmodified	_MPFSPYEPL_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5070452561	1	1080.50705	1079.49977	1.622	0.0017525	-0.75992	-0.00082109	0.86205	0.00093145	1080.5075323254391	29.4	0.26543	29.393	29.32	29.586	-0.0077209	126	103	1.544062	0.060166955	1.5425426	313.17938	0	12.203552						664	12	4	NaN	NaN	NaN	0.01047	1	11644	11644		91.429	54.842	1	98711			17286	2275	9987	10241	13691	13691					-0.036801104143250996
MPFSPYEPLNF	11	Unmodified	_MPFSPYEPLNF_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.31283154305	2	671.312832	1340.61111	1.0407	0.00069861	-3.0312	-0.0020349	-1.9905	-0.0013363	671.3109789884146	33.094	0.24132	33.094	33.021	33.262	0	1101	76	0.95892316	0.04580176	0.95892316	388.03265	0	18.533875						471	11	5	NaN	NaN	NaN	0.01741	1	19413	19413		63.765	43.252	1	97016			17287	2275	9988	10242	13692	13692					-0.045570957770223686
MPFSPYEPLNF	11	Unmodified	_MPFSPYEPLNF_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.31283154305	2	671.312832	1340.61111	0.92735	0.00062254	-2.2423	-0.0015053	-1.3149	-0.00088274	671.3109736193642	33.092	0.19285	33.09	33.018	33.21	-0.0024757	1101	79	0.95892316	0.047631264	0.9574037	388.03265	0	19.2742						429	9	5	NaN	NaN	NaN	0.03165	1	18550	18550		55.592	35.078	1	92540			17288	2275	9988	10242	13693	13693					-0.045570957770223686
MPFSPYEPLNF	11	Oxidation (M)	_M(Oxidation (M))PFSPYEPLNF_		M(1)PFSPYEPLNF		M(85)PFSPYEPLNF	0	0	1		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3102888541	2	679.310289	1356.60602	0.98881	0.00067171	-2.6417	-0.0017946	-1.6529	-0.0011228	679.3086684197577	31.018	0.16897	31.018	30.97	31.139	0	1095	73	0.9625867	0.043967307	0.9625867	389.46826	0	17.789429						468	8	4	NaN	NaN	NaN	0.00013397	1	19625	19625		85.344	68.486	1	75918			17289	2275	9988	10243	13694	13694		263			-0.05801399639653937
MPFSPYEPLNF	11	Oxidation (M)	_M(Oxidation (M))PFSPYEPLNF_		M(1)PFSPYEPLNF		M(72)PFSPYEPLNF	0	0	1		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3102888541	2	679.310289	1356.60602	1.1863	0.00080586	-3.5954	-0.0024424	-2.4091	-0.0016365	679.308274896571	31.017	0.21721	31.012	30.964	31.181	-0.0050716	1089	79	0.96624947	0.047631264	0.96473	390.95023	0	19.271881						484	10	4	NaN	NaN	NaN	0.0071373	1	18733	18733		72.076	55.85	1	79562			17290	2275	9988	10243	13695	13695		263			-0.05801399639653937
MPFSVFDSL	9	Unmodified	_MPFSVFDSL_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.4913951919	1	1042.4914	1041.48412	1.4897	0.001553	0.17599	0.00018346	1.6657	0.0017365	1042.4913046295796	34.324	0.14463	34.324	34.276	34.421	0	189	73	1.5068626	0.042547345	1.5068626	305.7751	0	8.633789						270	7	3	NaN	NaN	NaN	0.055351	1	10263	10263		44.638	22.512	1	31908			17291	1638	9989	10244	13696	13696					-0.034963969313594134
MPFSVFDSL	9	Unmodified	_MPFSVFDSL_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.4913951919	1	1042.4914	1041.48412	1.1549	0.001204	0.058914	6.1417E-05	1.2138	0.0012654	1042.4925908202065	34.299	0.16862	34.298	34.274	34.442	-0.0012474	189	100	1.5068626	0.058511972	1.5053432	305.7751	0	11.873352						284	8	3	NaN	NaN	NaN	0.028349	1	10058	10058		61.271	26.832	1	30985			17292	1638	9989	10244	13697	13697					-0.034963969313594134
MPFTLEEL	8	Unmodified	_MPFTLEEL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.4804961546	1	979.480496	978.47322	1.1869	0.0011626	-0.75809	-0.00074253	0.42883	0.00042004	979.4795414149903	31.525	0.16895	31.525	31.477	31.646	0	228	100	1.4837929	0.058642507	1.4837929	301.34708	0	11.909851						392	8	3	NaN	NaN	NaN	0.19946	1	7839	7839		50.033	8.5725	1	50885			17293	384	9990	10245	13698	13698					-0.01687799305648241
MPFTLEEL	8	Unmodified	_MPFTLEEL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.4804961546	1	979.480496	978.47322	1.0934	0.0010709	-1.2648	-0.0012388	-0.17143	-0.00016791	979.4790808691121	31.524	0.16896	31.519	31.471	31.64	-0.0044174	228	103	1.4837929	0.060422778	1.4822735	301.34708	0	12.271423						436	8	4	NaN	NaN	NaN	0.071487	1	7678	7678		71.993	8.6826	1	50983			17294	384	9990	10245	13699	13699					-0.01687799305648241
MPFTLEEL	8	Oxidation (M)	_M(Oxidation (M))PFTLEEL_		M(1)PFTLEEL		M(56)PFTLEEL	0	0	1		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4754107767001	1	995.475411	994.468134	1.906	0.0018974	-8.7659	-0.0087263	-6.8599	-0.0068289	995.4683142910936	28.87	0.21724	28.87	28.798	29.015	0	249	109	1.4713576	0.06394315	1.4713576	298.75482	0	12.983459						452	10	3	NaN	NaN	NaN	0.14214	1	8365	8365		55.947	19.911	1	46787			17295	384	9990	10246	13700	13700		33			-0.02932103168257072
MPFTMPEAFL	10	Unmodified	_MPFTMPEAFL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.2799458534	2	592.279946	1182.54534	0.59554	0.00035273	-0.22442	-0.00013292	0.37112	0.00021981	592.2798685800658	35.41	0.12061	35.41	35.385	35.506	0	1200	58	0.89836043	0.034918368	0.89836043	364.02103	0	14.149139						202	6	3	NaN	NaN	NaN	0.15427	1	15911	15911		39.459	20.34	1	17753			17296	2318	9991	10247	13701	13701					-0.038632082235835696
MPFTMPEAFL	10	Unmodified	_MPFTMPEAFL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2799458534	2	592.279946	1182.54534	0.37702	0.0002233	-0.10224	-6.0557E-05	0.27478	0.00016275	592.2799455156055	35.408	0.14454	35.409	35.361	35.505	0.00053024	1197	61	0.9001988	0.036758184	0.8986794	364.76596	0	14.894653						222	7	3	NaN	NaN	NaN	0.53991	1	15309	15309		17.799	4.3359	1	20664			17297	2318	9991	10247	13702	13702					-0.038632082235835696
MPFTTVSEL	9	Unmodified	_MPFTTVSEL_					0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24;ENST00000491466.5_1_17:38175784-38176226:-|nuORF	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5019598782	1	1024.50196	1023.49468	1.4376	0.0014728	0.45464	0.00046578	1.8922	0.0019386	1024.5022701187909	28.073	0.14478	28.064	28.016	28.161	-0.0089779	198	91	1.5015416	0.053240657	1.5000222	304.76535	0	10.806152						316	7	3	NaN	NaN	NaN	0.014046	1	9306	9306		80.639	44.052	1	101900			17298	380	9992	10248	13703	13703					-0.016124142769172067
MPGDPVEMTEF	11	Unmodified	_MPGDPVEMTEF_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.7648568952001	2	626.764857	1251.51516	1.4234	0.00089212	-9.105	-0.0057067	-7.6817	-0.0048146	626.7593133628355	27.567	0.12067	27.567	27.543	27.664	0	1131	43	0.94059354	0.025675297	0.94059354	380.89188	0	10.397156						118	6	2	NaN	NaN	NaN	0.65577	1	17806	17806		10.36	2.0826	1	17108			17299	50	9993	10249	13704	13704					-0.10053611679427377
MPGLGWVL	8	Unmodified	_MPGLGWVL_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4698718888	1	872.469872	871.462595	1.6102	0.0014049	1.3131	0.0011457	2.9234	0.0025506	872.4705181106693	34.492	0.07235	34.491	34.467	34.539	-0.0006485	384	43	1.3911947	0.02499926	1.3896753	283.02246	0	5.0858154						57	4	2	NaN	NaN	NaN	0.71635	1	5540	5540		18.034	5.4466	1	3369.9			17300	981	9994	10250	13705	13705					0.021722628305724356
MPGLRDPLL	9	Unmodified	_MPGLRDPLL_					0	0	0		ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.2864198273	2	506.28642	1010.55829	2.1851	0.0011063	-2.3905	-0.0012103	-0.2054	-0.00010399	506.28589522685314	25.684	0.16891	25.684	25.612	25.781	0	1281	70	0.84864825	0.042411506	0.84864825	344.5514	0	17.219086						184	8	3	NaN	NaN	NaN	0.022082	1	9008	9008		69.363	16.583	1	43714			17301	6221	9995	10251	13706	13706					0.05342990950816784
MPGLRDPLL	9	Unmodified	_MPGLRDPLL_					0	0	0		ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	ENST00000178638.7_1_15:63618224-63618410:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2864198273	2	506.28642	1010.55829	1.8501	0.00093666	-1.2801	-0.0006481	0.56994	0.00028855	506.28605182761106	25.708	0.26546	25.696	25.648	25.914	-0.0116	1281	76	0.84864825	0.04608953	0.8471288	344.5514	0	18.712341						252	12	4	NaN	NaN	NaN	0.04743	1	8832	8832		48.002	12.706	1	50384			17302	6221	9995	10251	13707	13707					0.05342990950816784
MPGNIVFVL	9	Unmodified	_MPGNIVFVL_					0	0	0		nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-2|NCF2	nc|ENSG00000116701|P19878-2|NCF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.5488504913002	1	989.54885	988.541574	1.6971	0.0016794	1.5484	0.0015322	3.2455	0.0032116	989.5502486405848	34.203	0.1689	34.203	34.155	34.324	0	216	91	1.4908947	0.05325198	1.4908947	302.74655	0	10.813538						269	8	3	NaN	NaN	NaN	0.10956	1	8171	8171		34.439	22.179	1	25676			17303	2099	9996	10252	13708	13708					0.0468449006488072
MPGNIVFVL	9	Unmodified	_MPGNIVFVL_					0	0	0		nc|ENSG00000116701|P19878-2|NCF2;nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-2|NCF2	nc|ENSG00000116701|P19878-2|NCF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.5488504913002	1	989.54885	988.541574	1.3508	0.0013367	-0.11809	-0.00011686	1.2327	0.0012198	989.5501031587854	34.178	0.19307	34.177	34.105	34.298	-0.0012474	216	109	1.4908947	0.06385493	1.4893752	302.74655	0	12.966644						384	9	3	NaN	NaN	NaN	0.094712	1	8001	8001		36.586	17.468	1	33738			17304	2099	9996	10252	13709	13709					0.0468449006488072
MPGPGGLG	8	Unmodified	_MPGPGGLG_					0	0	0		ENST00000329687.8_1_4:2934846-2935730:-|nuORF	ENST00000329687.8_1_4:2934846-2935730:-|nuORF	ENST00000329687.8_1_4:2934846-2935730:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.17052440225007	2	343.170524	684.326496	1.4752	0.00050625	5.4894	0.0018838	6.9646	0.0023901	343.17239531559983	31.041	0.14484	31.036	30.964	31.109	-0.0050716	1500	43	0.71351165	0.026016474	0.7119922	291.5334	0	10.630066						141	7	2	NaN	NaN	NaN	0.84876	1	2848	2848		0.39566	0	1	21455			17305	6501	9997	10253	13710	13710					-0.02829431680061134
MPGQTEDPAE	10	Unmodified	_MPGQTEDPAE_					0	0	0		nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-3|LAS1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.4408161843996	1	1074.44082	1073.43354	1.9552	0.0021007	3.9517	0.0042459	5.9069	0.0063466	1074.4450173118457	25.443	0.19304	25.443	25.371	25.564	0	198	64	1.5015416	0.03724277	1.5015416	304.57678	0	7.5544434						255	9	3	NaN	NaN	NaN	0.5917	1	11686	11686		15.463	0	1	24108			17306	293	9998	10254	13711	13711					-0.10023971047053237
MPGVGDFAV	9	Unmodified	_MPGVGDFAV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.4233156267001	1	892.423316	891.416039	1.6552	0.0014771	1.069	0.00095397	2.7242	0.0024311	892.4244785230906	27.615	0.072367	27.615	27.591	27.664	0	414	73	1.3733286	0.042878747	1.3733286	279.29062	0	8.720154						89	4	2	NaN	NaN	NaN	0.29681	1	5942	5942		19.118	5.0767	1	8448.9			17307	4425	9999	10255	13712	13712					-0.03401221791364151
MPGVGDFAV	9	Unmodified	_MPGVGDFAV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.4233156267001	1	892.423316	891.416039	1.2451	0.0011111	0.88965	0.00079394	2.1347	0.0019051	892.4246844792001	27.639	0.12063	27.629	27.581	27.702	-0.009552	408	52	1.3769034	0.030383706	1.375384	280.0176	0	6.179077						104	6	2	NaN	NaN	NaN	0.03623	1	5824	5824		52.758	28.908	1	9419.2			17308	4425	9999	10255	13713	13713					-0.03401221791364151
MPHDAIILL	9	Unmodified	_MPHDAIILL_					0	0	0		ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.78879534075	2	511.788795	1021.56304	1.0712	0.00054821	-1.4211	-0.00072733	-0.34998	-0.00017912	511.78815781015555	27.422	0.31373	27.411	27.363	27.677	-0.010126	1269	79	0.8560222	0.047899425	0.85450274	347.4949	0	19.444336						450	14	3	NaN	NaN	NaN	0.078597	1	9249	9249		38.918	2.8816	1	118860			17309	759	10000	10256	13714	13714					0.0531187509358233
MPHDLITQL	9	Unmodified	_MPHDLITQL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2813344494001	2	534.281334	1066.54812	2.0327	0.001086	-2.1177	-0.0011314	-0.084963	-4.5394E-05	534.2802186502255	24.068	0.19307	24.068	24.019	24.213	0	1242	100	0.87260187	0.060779035	0.87260187	354.0266	0	24.658875						540	9	4	NaN	NaN	NaN	0.074859	1	11412	11412		39.459	5.02	1	157170			17310	2653	10001	10257	13715	13715					0.017503832255897578
MPHDLITQL	9	Unmodified	_MPHDLITQL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2813344494001	2	534.281334	1066.54812	1.2979	0.00069346	-1.443	-0.00077099	-0.1451	-7.7525E-05	534.2805457241287	24.092	0.19301	24.079	24.031	24.224	-0.012749	1239	97	0.87444305	0.058927655	0.8729236	354.7736	0	23.907745						518	9	6	NaN	NaN	NaN	0.10956	1	11143	11143		34.439	0	1	140630			17311	2653	10001	10257	13716	13716					0.017503832255897578
MPHDLITQL	9	Unmodified						0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.281334	1066.54812	2.1678	0.0011582	4.1649	0.0022253	6.3327	0.0033835	534.28282573868	23.778	0.19276	23.778	23.754	23.947	0	1263	91	0.85970795	0.055262625	0.85970795	348.79535		22.420807	-0.15021	0.0053587	-0.0066078	NaN	34.439	447	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109980			17312	2653	10001	10257							0.017503832255897578
MPHDLITQL	9	Unmodified						0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.281334	1066.54812	0.95683	0.00051122	-3.6968	-0.0019751	-2.74	-0.0014639	534.2796477473579	24.478	0.19302	24.465	24.368	24.561	-0.012747	1263	97	0.85970795	0.058959544	0.8581885	348.79538		23.920685	0.19865	-0.0012016	-0.0072067	NaN	39.459	513	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50687			17313	2653	10001	10257							0.017503832255897578
MPHSSSAKL	9	Unmodified	_MPHSSSAKL_					0	0	0		ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.24475197785006	2	479.244752	956.474951	1.5463	0.00074106	-1.701	-0.00081519	-0.15468	-7.4127E-05	479.24431760204067	12.028	0.2401	12.028	11.98	12.22	0	1344	37	0.8098828	0.022179246	0.8098828	329.06226	0	9.011627						161	11	3	NaN	NaN	NaN	0.10945	1	7248	7248		34.454	15.336	1	13245			17314	3923	10002	10258	13717	13717					-0.005027454970218059
MPHSSSAKL	9	Unmodified	_MPHSSSAKL_					0	0	0		ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.24475197785006	2	479.244752	956.474951	1.5371	0.00073664	-3.8837	-0.0018612	-2.3466	-0.0011246	479.24214714041483	12.03	0.12001	12.022	11.998	12.118	-0.0081863	1344	37	0.8098828	0.022179246	0.8083634	329.06226	0	9.011627						89	6	3	NaN	NaN	NaN	0.059222	1	7108	7108		42.995	16.88	1	7906.7			17315	3923	10002	10258	13718	13718					-0.005027454970218059
MPHVQDPSL	9	Unmodified	_MPHVQDPSL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.250034321	2	512.250034	1022.48552	2.1288	0.0010905	-3.2191	-0.001649	-1.0902	-0.00055848	512.2492316036477	19.06	0.16792	19.06	18.988	19.156	0	1341	85	0.8117308	0.05170685	0.8117308	329.51123	0	20.989716						306	8	3	NaN	NaN	NaN	0.024221	1	9455	9455		66.656	24.339	1	45597			17316	3392	10003	10259	13719	13719					-0.02482762842601005
MPHVQDPSL	9	Unmodified	_MPHVQDPSL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.250034321	2	512.250034	1022.48552	1.3308	0.0006817	-2.5985	-0.0013311	-1.2677	-0.00064937	512.2494323603263	19.106	0.19221	19.092	19.02	19.212	-0.014141	1335	76	0.8154261	0.04616934	0.81390667	331.01132	0	18.741821						279	9	4	NaN	NaN	NaN	0.032826	1	9263	9263		55.413	20.117	1	41635			17317	3392	10003	10259	13720	13720					-0.02482762842601005
MPIGGDVPAL	10	Unmodified	_MPIGGDVPAL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.5073796071	1	969.50738	968.500103	1.6095	0.0015604	-1.4822	-0.001437	0.12731	0.00012343	969.506782441063	27.35	0.14483	27.35	27.277	27.422	0	291	64	1.446459	0.03736949	1.446459	293.8069	0	7.590576						174	7	2	NaN	NaN	NaN	0.13037	1	7567	7567		41.785	15.67	1	20022			17318	3790	10004	10260	13721	13721					0.014593093055395912
MPIGGDVPAL	10	Unmodified	_MPIGGDVPAL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.5073796071	1	969.50738	968.500103	1.0247	0.00099341	0.60564	0.00058717	1.6303	0.0015806	969.5087687261157	27.349	0.1207	27.339	27.291	27.411	-0.010126	288	64	1.4482387	0.03736949	1.4467193	294.16837	0	7.5905457						182	6	3	NaN	NaN	NaN	0.0076061	1	7419	7419		74.332	49.77	1	19626			17319	3790	10004	10260	13722	13722					0.014593093055395912
MPIGGDVPAL	10	Unmodified						0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-4|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	969.50738	968.500103	1.3898	0.0013474	-3.2472	-0.0031482	-1.8574	-0.0018008	969.5043986854823	27.663	0.048256	27.653	27.629	27.677	-0.009552	246	37	1.4731345	0.021323442	1.4716152	299.22525		4.331238	0.15172	-0.00111	0.012578	NaN	41.785	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5121.1			17320	3790	10004	10260							0.014593093055395912
MPIGPDVSL	9	Oxidation (M)	_M(Oxidation (M))PIGPDVSL_		M(1)PIGPDVSL		M(59)PIGPDVSL	0	0	1		ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4757451277001	1	944.475745	943.468469	1.443	0.0013629	2.269	0.002143	3.712	0.0035059	944.4772756904289	24.767	0.096537	24.767	24.767	24.864	0	336	67	1.419741	0.03921354	1.419741	288.48715	0	7.9680786						155	5	3	NaN	NaN	NaN	0.030391	1	6901	6901		58.599	33.638	1	12770			17321	4805	10005	10261	13723	13723		508			-0.00552683448404423
MPIGPDVSL	9	Oxidation (M)						0	0	1		ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.475745	943.468469	1.51	0.0014262	3.2609	0.0030799	4.7709	0.004506	944.4789988702258	24.767	0.096495	24.755	24.755	24.851	-0.012392	336	67	1.419741	0.039209366	1.4182216	288.48715		7.9672546	-0.0062738	0.00040227	-0.00075972	NaN	58.599	159	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12521			17322	4805	10005	10261				508			-0.00552683448404423
MPIKDNAL	8	Unmodified	_MPIKDNAL_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant;ENSG00000121931|ENST00000369763|LRIF1	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.24422066159997	2	451.244221	900.473888	1.7047	0.00076922	0.57418	0.00025909	2.2789	0.0010283	451.2445742478099	17.642	0.11984	17.628	17.604	17.724	-0.013786	1386	37	0.78399014	0.022210538	0.7824707	318.82236	0	9.032288						79	6	2	NaN	NaN	NaN	0.45636	1	5975	5975		33.425	8.8633	1	7286.6			17323	2308	10006	10262	13724	13724					0.019670401340590615
MPITEVFKEEM	11	Unmodified	_MPITEVFKEEM_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.32508163855	2	677.325082	1352.63561	1.5407	0.0010435	-1.9874	-0.0013461	-0.44669	-0.00030255	677.3258155156758	26.577	0.19309	26.577	26.529	26.722	0	1092	70	0.9644182	0.042133093	0.9644182	390.22083	0	17.04776						324	9	4	NaN	NaN	NaN	0.2069	1	19575	19575		43.765	26.566	1	50674			17324	2711	10007	10263	13725	13725					-0.026602036858093925
MPITEVFKEEM	11	Oxidation (M)	_MPITEVFKEEM(Oxidation (M))_		MPITEVFKEEM(1)		M(-89)PITEVFKEEM(89)	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3225389496	2	685.322539	1368.63052	2.1569	0.0014782	-2.8146	-0.0019289	-0.65776	-0.00045078	685.3204559547981	23.682	0.19276	23.682	23.562	23.754	0	1092	94	0.9644182	0.05676967	0.9644182	390.1747	0	22.967316						483	9	3	NaN	NaN	NaN	2.0773E-06	1	19784	19784		91.227	65.546	2	68274			17325	2711	10007	10264	13726	13726		311;312			-0.03904507548440961
MPITEVFKEEM	11	Oxidation (M)	_M(Oxidation (M))PITEVFKEEM_		M(1)PITEVFKEEM		M(47)PITEVFKEEM(-47)	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3225389496	2	685.322539	1368.63052	1.5562	0.0010665	-4.5295	-0.0031042	-2.9733	-0.0020377	685.821505533626	24.164	0.14475	24.151	24.079	24.224	-0.012749	1098	94	0.960755	0.056812584	0.9592356	388.69272	0	22.98465						351	7	4	NaN	NaN	NaN	0.063104	1	18857	18857		46.512	28.732	2	31646			17326	2711	10007	10264	13727	13727		311;312			-0.03904507548440961
MPITEVFKEEM	11	Oxidation (M)	_MPITEVFKEEM(Oxidation (M))_		MPITEVFKEEM(1)		M(-77)PITEVFKEEM(77)	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3225389496	2	685.322539	1368.63052	1.9636	0.0013457	-3.6384	-0.0024935	-1.6748	-0.0011478	685.3204227405301	23.682	0.16864	23.669	23.596	23.765	-0.013048	1095	97	0.9625867	0.058597803	0.96106726	389.43375	0	23.70691						538	8	4	NaN	NaN	NaN	0.0015715	1	18858	18858		77.489	58.325	2	67407			17327	2711	10007	10264	13728	13728		311;312			-0.03904507548440961
MPITEVFKEEM	11	2 Oxidation (M)	_M(Oxidation (M))PITEVFKEEM(Oxidation (M))_		M(1)PITEVFKEEM(1)		M(65)PITEVFKEEM(65)	0	0	2		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3199962606501	2	693.319996	1384.62544	1.3219	0.0009165	-2.2472	-0.0015581	-0.92534	-0.00064156	693.3192723604345	21.055	0.12039	21.055	21.007	21.127	0	1092	85	0.9644182	0.05126202	0.9644182	390.12964	0	20.736664						298	6	3	NaN	NaN	NaN	0.01548	1	19929	19929		64.873	40.472	1	24392			17328	2711	10007	10265	13729	13729		311;312			-0.05148811411049792
MPITEVFKEEM	11	2 Oxidation (M)	_M(Oxidation (M))PITEVFKEEM(Oxidation (M))_		M(1)PITEVFKEEM(1)		M(75)PITEVFKEEM(75)	0	0	2		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3199962606501	2	693.319996	1384.62544	0.8674	0.00060139	-1.7365	-0.0012039	-0.86908	-0.00060255	693.3187699005331	21.079	0.14445	21.065	20.993	21.138	-0.014004	1092	76	0.9644182	0.045772135	0.96289873	390.1296	0	18.5159						316	7	4	NaN	NaN	NaN	0.0039884	1	18999	18999		75.138	53.288	1	23798			17329	2711	10007	10265	13730	13730		311;312			-0.05148811411049792
MPIVLELIP	9	Unmodified	_MPIVLELIP_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.6111163971	1	1024.61112	1023.60384	1.5605	0.0015989	-0.23719	-0.00024303	1.3233	0.0013558	1024.6108668768284	37.963	0.28832	37.963	37.843	38.131	0	168	103	1.5192716	0.06021154	1.5192716	308.36353	0	12.221039						626	13	3	NaN	NaN	NaN	0.098515	1	9534	9534		36.036	6.438	1	103830			17330	5794	10008	10266	13731	13731					0.09298216413208138
MPIVLELIP	9	Unmodified						0	0	0		ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1024.61112	1023.60384	1.78	0.0018238	-0.80044	-0.00082014	0.97956	0.0010037	1024.6107780806915	37.961	0.28844	37.964	37.844	38.132	0.0034256	165	103	1.5210435	0.06023085	1.5195241	308.72318		12.224915	0.0004751	-0.0002883	0.00012626	NaN	36.036	689	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118460			17331	5794	10008	10266							0.09298216413208138
MPKAEYSSL	9	Unmodified	_MPKAEYSSL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2522426589501	2	513.252243	1024.48993	2.2323	0.0011457	-3.0117	-0.0015458	-0.77945	-0.00040005	513.2504471356325	17.597	0.11988	17.597	17.573	17.693	0	1227	40	0.88180584	0.023922563	0.88180584	357.94797	0	9.710785						150	6	3	NaN	NaN	NaN	0.27507	1	9546	9546		20.513	5.0506	1	16558			17332	3097	10009	10267	13732	13732					-0.021332984196760663
MPKRTIRHVKR	11	Unmodified	_MPKRTIRHVKR_					0	0	0			REV__nc|ENSG00000164556|Q6ZVS7|CFAP144P1	REV__nc|ENSG00000164556|Q6ZVS7|CFAP144P1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4353467152499	2	711.435347	1420.85614	1.2585	0.00089531	6.6658	0.0047423	7.9242	0.0056376	711.9418415597795	20.815	0.096251	20.801	20.752	20.849	-0.014088	1275	31	0.85233563	0.018434763	0.8508162	344.70267	0	7.455414						77	5	3	NaN	NaN	NaN	0.77883	1	19270	19270		0.44583	0.33277	1	4167.3	+		17333	13161	10010	10268	13733	13733					0.16254667267094192
MPLADSQAV	9	Unmodified	_MPLADSQAV_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.4553440366001	1	931.455344	930.448068	1.5941	0.0014849	-0.70766	-0.00065916	0.88648	0.00082571	931.4551569302821	20.862	0.14453	20.862	20.814	20.959	0	390	64	1.3876231	0.037496924	1.3876231	282.01764	0	7.6207886						185	7	2	NaN	NaN	NaN	0.017076	1	6617	6617		75.698	25.737	1	21407			17334	7990	10011	10269	13734	13734					-0.019938541082183292
MPLADSQAV	9	Unmodified	_MPLADSQAV_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4553440366001	1	931.455344	930.448068	0.86027	0.00080131	0.96501	0.00089886	1.8253	0.0017002	931.4564755786419	20.887	0.14445	20.873	20.801	20.945	-0.014088	390	73	1.3876231	0.0428468	1.3861036	282.01764	0	8.708099						196	7	2	NaN	NaN	NaN	0.042816	1	6478	6478		49.961	19.351	1	22367			17335	7990	10011	10269	13735	13735					-0.019938541082183292
MPLAEAGAL	9	Unmodified	_MPLAEAGAL_					0	0	0		ENST00000442114.6_2_6:43968341-43968485:+|nuORF;nc|ENSG00000181577|Q8N319-4|LINC03040;nc|ENSG00000181577|Q8N319|LINC03040	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.4546157551	1	872.454616	871.447339	1.3945	0.0012166	0.054178	4.7268E-05	1.4486	0.0012639	872.4551882111848	24.719	0.12064	24.719	24.695	24.816	0	405	43	1.3786905	0.025015235	1.3786905	280.4787	0	5.089081						95	6	2	NaN	NaN	NaN	0.20577	1	5676	5676		24.961	9.4983	1	8606.5			17336	7010	10012	10270	13736	13736					0.00647351242730565
MPLAEAGAL	9	Unmodified	_MPLAEAGAL_					0	0	0		ENST00000442114.6_2_6:43968341-43968485:+|nuORF;nc|ENSG00000181577|Q8N319-4|LINC03040;nc|ENSG00000181577|Q8N319|LINC03040	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4546157551	1	872.454616	871.447339	1.2468	0.0010878	-0.96054	-0.00083803	0.28626	0.00024975	872.4542319864838	24.743	0.072365	24.731	24.707	24.779	-0.012394	402	52	1.3804773	0.030377269	1.3789579	280.84222	0	6.179901						69	4	2	NaN	NaN	NaN	0.20577	1	5539	5539		24.961	9.7856	1	6261.5			17337	7010	10012	10270	13737	13737					0.00647351242730565
MPLALLVLL	9	Unmodified	_MPLALLVLL_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.6369372171001	1	982.636937	981.629661	0.45629	0.00044837	0.85662	0.00084175	1.3129	0.0012901	982.6376153604674	44.973	0.19165	44.985	44.913	45.105	0.011646	171	85	1.5174994	0.049601793	1.51598	308.17886	0	10.073303						285	9	3	NaN	NaN	NaN	0.10053	1	7785	7785		35.745	7.884	1	29727			17338	2397	10013	10271	13738	13738					0.1381111065549021
MPLEDMNEF	9	Unmodified	_MPLEDMNEF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.4591087855	1	1125.45911	1124.45183	2.1078	0.0023722	0.60216	0.0006777	2.7099	0.0030499	1125.4590801589268	27.519	0.19307	27.519	27.471	27.664	0	93	106	1.5635144	0.061887383	1.5635144	316.96478	0	12.546173						537	9	4	NaN	NaN	NaN	0.0073225	1	13856	13856		97.85	62.553	1	70168			17339	2157	10014	10272	13739	13739					-0.1054155239667125
MPLEDMNEF	9	Unmodified	_MPLEDMNEF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.4591087855	1	1125.45911	1124.45183	1.0992	0.0012371	1.5885	0.0017878	2.6877	0.0030249	1125.4597020897302	27.542	0.21718	27.533	27.46	27.677	-0.0095501	90	106	1.5652816	0.061880827	1.5637622	317.32306	0	12.544861						524	10	4	NaN	NaN	NaN	0.0073225	1	13427	13427		97.85	63.411	1	65372			17340	2157	10014	10272	13740	13740					-0.1054155239667125
MPLEDMNEF	9	Oxidation (M)	_M(Oxidation (M))PLEDMNEF_		M(0.998)PLEDM(0.002)NEF		M(27)PLEDM(-27)NEF	0	0	1		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1141.4540234075998	1	1141.45402	1140.44675	2.4179	0.0027599	-1.9716	-0.0022505	0.4463	0.00050943	1141.451747771368	24.84	0.096518	24.84	24.816	24.912	0	96	52	1.5617468	0.030043602	1.5617468	316.5526	0	6.0895996						90	5	2	NaN	NaN	NaN	0.048656	1	14453	14453		47.482	26.968	2	7611.7			17341	2157	10014	10273	13741	13741		250			-0.11785856259302818
MPLEEGDTF	9	Unmodified	_MPLEEGDTF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4448389298	1	1038.44484	1037.43756	1.5379	0.001597	-0.44244	-0.00045945	1.0954	0.0011375	1038.4447502592686	24.55	0.28938	24.55	24.454	24.743	0	225	136	1.4855686	0.0798738	1.4855686	301.46945	0	16.208954						634	13	3	NaN	NaN	NaN	0.0072287	1	10087	10087		98.041	63.587	1	98113			17342	5582	10015	10274	13742	13742					-0.07965881553309373
MPLEEGDTF	9	Unmodified	_MPLEEGDTF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4448389298	1	1038.44484	1037.43756	1.3433	0.001395	1.0668	0.0011078	2.4101	0.0025028	1038.445775989652	24.55	0.26535	24.538	24.465	24.731	-0.012394	225	142	1.4855686	0.083441496	1.4840492	301.46945	0	16.932953						657	12	4	NaN	NaN	NaN	3.2142E-07	1	9880	9880		129.63	74.214	1	88136			17343	5582	10015	10274	13743	13743					-0.07965881553309373
MPLEEGDTF	9	Oxidation (M)	_M(Oxidation (M))PLEEGDTF_		M(1)PLEEGDTF		M(100)PLEEGDTF	0	0	1		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.4397535519	1	1054.43975	1053.43248	1.9632	0.0020701	-0.69638	-0.00073429	1.2668	0.0013358	1054.4391229411217	21.344	0.096214	21.344	21.296	21.392	0	147	49	1.5316714	0.028331876	1.5316714	310.76324	0	5.748291						96	5	2	NaN	NaN	NaN	0.0047854	1	10773	10773		103.03	58.724	1	11120			17344	5582	10015	10275	13744	13744		572			-0.09210185415918204
MPLEEGDTF	9	Oxidation (M)	_M(Oxidation (M))PLEEGDTF_		M(1)PLEEGDTF		M(45)PLEEGDTF	0	0	1		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.4397535519	1	1054.43975	1053.43248	2.0364	0.0021473	-1.0958	-0.0011554	0.94065	0.00099186	1054.4379204438003	21.368	0.096157	21.354	21.282	21.378	-0.014006	225	46	1.4855686	0.026633143	1.4840492	301.4094	0	5.4036255						83	5	2	NaN	NaN	NaN	0.055351	1	10544	10544		44.638	25.52	1	4618.1			17345	5582	10015	10275	13745	13745		572			-0.09210185415918204
MPLEEGDTF	9	Oxidation (M)	_M(Oxidation (M))PLEEGDTF_		M(1)PLEEGDTF		M(81)PLEEGDTF	0	0	1		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.4397535519	1	1054.43975	1053.43248	1.6624	0.0017529	1.731	0.0018252	3.3934	0.0035782	1054.441415164199	21.368	0.096157	21.354	21.282	21.378	-0.014006	147	52	1.5316714	0.03010106	1.530152	310.76324	0	6.107239						92	5	2	NaN	NaN	NaN	0.014046	1	10546	10546		80.639	48.186	1	10942			17346	5582	10015	10275	13746	13746		572			-0.09210185415918204
MPLEEGDTFFF	11	Unmodified	_MPLEEGDTFFF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.7944716144	2	666.794472	1331.57439	1.4858	0.00099073	-0.76005	-0.0005068	0.72576	0.00048393	666.7936094309215	34.71	0.21706	34.71	34.589	34.806	0	1107	73	0.9552588	0.043972015	0.9552588	386.57663	0	17.794739						227	10	3	NaN	NaN	NaN	0.14658	1	19275	19275		35.296	17.498	1	22259			17347	5582	10016	10276	13747	13747					-0.0781339239360932
MPLFSDVL	8	Unmodified	_MPLFSDVL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.4750168462	1	921.475017	920.46774	1.2409	0.0011434	-1.6397	-0.001511	-0.39883	-0.00036751	921.4760979337542	33.092	0.072346	33.09	33.066	33.138	-0.0024757	324	37	1.42687	0.021380186	1.4253505	290.03998	0	4.3459473						78	4	3	NaN	NaN	NaN	0.57691	1	6291	6291		26.732	8.9512	1	4569.4			17348	4611	10017	10277	13748	13748					0.00432521902530425
MPLFSDVLL	9	Unmodified	_MPLFSDVLL_					0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5590808266	1	1034.55908	1033.5518	1.5427	0.0015961	-2.287	-0.0023661	-0.74428	-0.00077	1034.556852612853	36.372	0.072166	36.374	36.326	36.398	0.0016747	132	85	1.5405227	0.049570203	1.5390033	312.63684	0	10.0598755						141	4	2	NaN	NaN	NaN	0.094712	1	9732	9732		36.586	12.024	1	14187			17349	4611	10018	10278	13749	13749					0.03637052999442858
MPLFSDVLL	9	Unmodified						0	0	0		nc|ENSG00000168297|Q7Z7A4-2|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	nc|ENSG00000168297|Q7Z7A4-2|PXK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.55908	1033.5518	1.4662	0.0015169	-5.0033	-0.0051762	-3.5371	-0.0036594	1034.551094701485	36.35	0.24113	36.35	36.278	36.519	0	135	112	1.5387528	0.06554186	1.5387528	312.27765		13.301178	-0.011981	-0.0019029	-0.00012523	NaN	36.586	332	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26186			17350	4611	10018	10278							0.03637052999442858
MPLGSAVDIL	10	Unmodified	_MPLGSAVDIL_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.5492444218002	1	1015.54924	1014.54197	1.95	0.0019803	3.4828	0.003537	5.4328	0.0055173	1016.5569628804573	30.922	0.24134	30.922	30.849	31.091	0	183	157	1.510409	0.09223509	1.510409	306.60107	0	18.722961						877	11	4	NaN	NaN	NaN	0.12649	1	9161	9161		42.318	2.1638	1	245330			17351	1855	10019	10279	13750	13750					0.03527864994077845
MPLGSAVDIL	10	Unmodified	_MPLGSAVDIL_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.5492444218002	1	1015.54924	1014.54197	1.949	0.0019793	2.9985	0.0030452	4.9475	0.0050244	1016.5574445794983	30.896	0.16899	30.891	30.842	31.011	-0.0057545	180	154	1.5121819	0.09044683	1.5106624	306.96097	0	18.360016						841	8	4	NaN	NaN	NaN	0.033206	1	8987	8987		58.235	26.674	1	255020			17352	1855	10019	10279	13751	13751					0.03527864994077845
MPLGSAVDIL	10	Oxidation (M)	_M(Oxidation (M))PLGSAVDIL_		M(1)PLGSAVDIL		M(81)PLGSAVDIL	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5441590439	1	1031.54416	1030.53688	1.9538	0.0020154	-1.4451	-0.0014907	0.50869	0.00052474	1031.5429704511291	28.363	0.21717	28.363	28.291	28.508	0	168	127	1.5192716	0.074458	1.5192716	308.33597	0	15.111237						477	10	4	NaN	NaN	NaN	0.0035994	1	9803	9803		80.639	45.342	1	78532			17353	1855	10019	10280	13752	13752		210			0.022835611314576454
MPLGSAVDIL	10	Oxidation (M)	_M(Oxidation (M))PLGSAVDIL_		M(1)PLGSAVDIL		M(67)PLGSAVDIL	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5441590439	1	1031.54416	1030.53688	1.2035	0.0012415	-0.35135	-0.00036244	0.85215	0.00087903	1031.544225061496	28.387	0.16893	28.378	28.305	28.474	-0.0089779	168	109	1.5192716	0.06380761	1.5177522	308.33594	0	12.949738						442	8	4	NaN	NaN	NaN	0.013201	1	9599	9599		67.154	29.023	1	75008			17354	1855	10019	10280	13753	13753		210			0.022835611314576454
MPLGSAVDIL	10	Oxidation (M)						0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1031.54416	1030.53688	1.7166	0.0017707	-3.567	-0.0036795	-1.8504	-0.0019088	1031.541555043499	28.701	0.072407	28.692	28.668	28.74	-0.0083504	207	34	1.496219	0.019520521	1.4946996	303.65744		3.9617004	0.16438	-0.0018574	-0.012286	NaN	80.639	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3761.2			17355	1855	10019	10280				210			0.022835611314576454
MPLLDFSF	8	Unmodified	_MPLLDFSF_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4750168462001	1	969.475017	968.46774	1.7851	0.0017306	-0.84389	-0.00081813	0.94125	0.00091252	969.4746168337526	36.446	0.21706	36.446	36.398	36.615	0	240	82	1.4766881	0.04798031	1.4766881	299.94717	0	9.745819						420	10	4	NaN	NaN	NaN	0.09307	1	7560	7560		65.672	15.639	1	72105			17356	3480	10020	10281	13754	13754					-0.017754780974541973
MPLLDFSF	8	Unmodified	_MPLLDFSF_					0	0	0		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.4750168462001	1	969.475017	968.46774	1.4931	0.0014475	-0.59849	-0.00058023	0.89463	0.00086732	969.4744659887999	36.445	0.16875	36.446	36.398	36.567	0.0016785	240	79	1.4766881	0.046200752	1.4751687	299.94717	0	9.384369						381	8	4	NaN	NaN	NaN	0.044274	1	7413	7413		81.001	44.965	1	66216			17357	3480	10020	10281	13755	13755					-0.017754780974541973
MPLLDFSF	8	Oxidation (M)	_M(Oxidation (M))PLLDFSF_		M(1)PLLDFSF		M(66)PLLDFSF	0	0	1		nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENSG00000144554|ENST00000675286|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-1|FANCD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.4699314683002	1	985.469931	984.462655	1.2069	0.0011894	0.56644	0.00055821	1.7733	0.0017476	985.4705098252844	33.673	0.1448	33.673	33.648	33.793	0	228	67	1.4837929	0.039067984	1.4837929	301.3216	0	7.9337463						199	7	3	NaN	NaN	NaN	0.09307	1	8023	8023		65.672	30.376	1	23997			17358	3480	10020	10282	13756	13756		390			-0.030197819600630282
MPLLENLYL	9	Unmodified	_MPLLENLYL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.5961946143998	1	1105.59619	1104.58892	1.6339	0.0018064	-1.3499	-0.0014924	0.28403	0.00031402	1105.5940177942866	34.662	0.048294	34.662	34.638	34.686	0	66	58	1.579413	0.033549786	1.579413	320.25772	0	6.802887						104	3	3	NaN	NaN	NaN	0.2345	1	13048	13048		23.118	3.9993	1	10889			17359	1346	10021	10283	13757	13757					0.04080724545178782
MPLLENLYL	9	Unmodified	_MPLLENLYL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5961946143998	1	1105.59619	1104.58892	1.4321	0.0015833	-4.601	-0.0050869	-3.1689	-0.0035035	1105.5908524041333	34.685	0.072319	34.684	34.612	34.684	-0.0006485	63	55	1.5811787	0.03178227	1.5796592	320.61572	0	6.444519						98	4	3	NaN	NaN	NaN	0.13602	1	12702	12702		30.61	8.7751	1	8694.8			17360	1346	10021	10283	13758	13758					0.04080724545178782
MPLLENLYL	9	Unmodified						0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1105.59619	1104.58892	2.0504	0.0022669	-6.3426	-0.0070123	-4.2922	-0.0047454	1105.5897039372392	35.022	0.096539	35.022	34.998	35.094	-4.5776E-05	63	40	1.5811787	0.02295518	1.5796592	320.61575		4.654602	0.18012	-0.0038833	0.00012308	NaN	23.118	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844.9			17361	1346	10021	10283							0.04080724545178782
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.8077163754001	2	564.807716	1127.60088	2.1265	0.001201	-3.6552	-0.0020645	-1.5287	-0.00086343	564.8056173091829	22.332	0.14472	22.332	22.284	22.429	0	1209	67	0.892844	0.040473342	0.892844	361.98895	0	16.40924						281	7	5	NaN	NaN	NaN	0.032689	1	14002	14002		55.592	10.953	1	84973			17362	472	10022	10284	13759	13759					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.8077163754001	2	564.807716	1127.60088	1.2483	0.00070507	-1.4109	-0.00079687	-0.16253	-9.18E-05	564.8072651914086	22.356	0.14432	22.342	22.294	22.438	-0.013731	1209	70	0.892844	0.042315364	0.8913246	361.98895	0	17.156067						291	7	5	NaN	NaN	NaN	0.017076	1	13561	13561		75.698	28.563	1	81766			17363	472	10022	10284	13760	13760					0.042183412884014615
MPLNSPTPSRF	11	Unmodified	_MPLNSPTPSRF_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.8160727237499	2	623.816073	1245.61759	1.3799	0.00086078	5.4648	0.003409	6.8446	0.0042698	623.8203941560346	21.368	0.16849	21.368	21.296	21.464	0	1158	46	0.92408	0.027531445	0.92408	374.22403	0	11.149414						176	8	3	NaN	NaN	NaN	0.65755	1	17654	17654		10.244	1.9989	1	16305	+		17364	10857	10023	10285	13761	13761					0.004608421743114377
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5386797355001	1	985.53868	984.531403	1.5173	0.0014954	-2.3786	-0.0023442	-0.86126	-0.0008488	985.5367233609759	34.203	0.1206	34.203	34.083	34.203	0	222	79	1.4873441	0.046137094	1.4873441	302.0425	0	9.369293						115	6	2	NaN	NaN	NaN	0.074859	1	8039	8039		39.459	12.163	1	8503.9			17365	4112	10024	10286	13762	13762					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5386797355001	1	985.53868	984.531403	1.9791	0.0019505	-0.18865	-0.00018593	1.7904	0.0017646	985.5386473186119	33.431	0.31361	33.431	33.359	33.673	0	216	265	1.4908947	0.15642238	1.4908947	302.76352	0	31.765472						1673	14	5	NaN	NaN	NaN	0.030696	1	8041	8041		58.2	13.561	1	1478800			17366	4112	10024	10286	13763	13763					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.27297810105	2	493.272978	984.531403	0.45134	0.00022263	-2.2946	-0.0011319	-1.8433	-0.00090924	493.27190405994526	33.43	0.24133	33.428	33.356	33.597	-0.0018501	1293	109	0.84127116	0.06642276	0.8397517	341.67755	0	26.977234						501	11	4	NaN	NaN	NaN	0.023074	1	7864	7864		68.108	28.65	1	142780			17367	4112	10024	10286	13764	13764					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5386797355001	1	985.53868	984.531403	1.5321	0.0015099	-1.3462	-0.0013268	0.18585	0.00018316	985.5368982023126	34.154	0.072403	34.153	34.08	34.153	-0.0012474	219	67	1.4891195	0.03904736	1.4876001	302.403	0	7.929535						87	4	2	NaN	NaN	NaN	0.20577	1	7865	7865		24.961	1.6266	1	7502.8			17368	4112	10024	10286	13765	13765					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5386797355001	1	985.53868	984.531403	1.4625	0.0014414	0.5656	0.00055742	2.0281	0.0019988	985.5391434395403	34.251	0.12055	34.249	34.201	34.322	-0.0012474	219	55	1.4891195	0.03195119	1.4876001	302.403	0	6.4884644						152	6	2	NaN	NaN	NaN	0.019103	1	7866	7866		73.133	23.3	1	12595			17369	4112	10024	10286	13766	13766					0.03851882339631629
MPLNVADLI	9	Unmodified	_MPLNVADLI_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5386797355001	1	985.53868	984.531403	1.913	0.0018853	0.21837	0.00021521	2.1313	0.0021005	985.5391463592586	33.43	0.41021	33.428	33.283	33.694	-0.0018501	213	268	1.4926696	0.15820825	1.4911501	303.12396	0	32.128143						1830	18	5	NaN	NaN	NaN	0.0073225	1	7867	7867		97.85	42.437	1	1385000			17370	4112	10024	10286	13767	13767					0.03851882339631629
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(89)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5335943576001	1	1001.53359	1000.52632	1.7582	0.0017608	0.12552	0.00012572	1.8837	0.0018866	1001.5344893255062	31.115	0.31372	31.115	31.042	31.356	0	156	238	1.5263584	0.14026797	1.5263584	309.89688	0	28.478638						1629	14	4	NaN	NaN	NaN	0.011206	1	8618	8618		89.256	19.473	1	1071800			17371	4112	10024	10287	13768	13768		443			0.026075784770227983
MPLNVADLI	9	Oxidation (M)	_M(Oxidation (M))PLNVADLI_		M(1)PLNVADLI		M(85)PLNVADLI	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5335943576001	1	1001.53359	1000.52632	2.2229	0.0022263	-0.66687	-0.0006679	1.556	0.0015584	1001.5336901130124	31.114	0.38611	31.109	31.036	31.422	-0.0050716	153	253	1.5281296	0.14916956	1.5266101	310.2565	0	30.28592						1755	17	5	NaN	NaN	NaN	0.012495	1	8452	8452		85.344	18.688	1	1198200			17372	4112	10024	10287	13769	13769		443			0.026075784770227983
MPLPEEVTQIL	11	Unmodified	_MPLPEEVTQIL_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.3415889825001	2	635.341589	1268.66863	1.1289	0.00071725	-7.1297	-0.0045298	-6.0008	-0.0038125	635.3374133275764	33.237	0.14478	33.235	33.114	33.259	-0.0024757	1149	61	0.92958635	0.036694765	0.9280669	376.37897	0	14.8573						105	7	2	NaN	NaN	NaN	0.44296	1	17396	17396		20.513	6.0638	1	9027.7			17373	3281	10025	10288	13770	13770					0.04503746428554223
MPLQDSISL	9	Oxidation (M)	_M(Oxidation (M))PLQDSISL_		M(1)PLQDSISL		M(43)PLQDSISL	0	0	1		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5077735376001	1	1019.50777	1018.5005	2.5898	0.0026403	0.7921	0.00080756	3.3819	0.0034479	1019.51037132374	25.178	0.048237	25.178	25.153	25.202	0	183	58	1.510409	0.033688784	1.510409	306.5851	0	6.838196						90	3	2	NaN	NaN	NaN	0.059222	1	9317	9317		42.995	7.6983	1	9572.9			17374	5265	10026	10289	13771	13771		549			-0.00801315765261279
MPLRKQEEL	9	Unmodified	_MPLRKQEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.31316589405	2	572.313166	1142.61178	1.6819	0.0009626	-3.3122	-0.0018956	-1.6303	-0.00093304	572.3124431043906	14.309	0.096105	14.309	14.261	14.357	0	1233	31	0.87812483	0.018406928	0.87812483	355.9648	0	7.461609						84	5	3	NaN	NaN	NaN	0.38313	1	14555	14555		14.425	3.8201	1	6055.7			17375	594	10027	10290	13772	13772					0.04617743662674911
MPLRKQEEL	9	Unmodified	_MPLRKQEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.31316589405	2	572.313166	1142.61178	1.3005	0.00074431	-4.1218	-0.002359	-2.8213	-0.0016147	572.3105783613252	14.428	0.11975	14.417	14.345	14.465	-0.011219	1233	31	0.87812483	0.018406928	0.8766054	355.9648	0	7.4615784						73	6	2	NaN	NaN	NaN	0.48181	1	14075	14075		10.36	3.497	1	5598.5			17376	594	10027	10290	13773	13773					0.04617743662674911
MPLSEDFVWM	10	Oxidation (M)	_MPLSEDFVWM(Oxidation (M))_		MPLSEDFVWM(1)		M(-53)PLSEDFVWM(53)	0	0	1		ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENSG00000092036|ENST00000541587|HAUS4	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.7777673052	2	635.777767	1269.54098	1.4923	0.0009488	-1.9514	-0.0012407	-0.45906	-0.00029186	635.7763459779362	30.801	0.28959	30.801	30.704	30.994	0	1143	100	0.9332562	0.060556173	0.9332562	377.86203	0	24.518341						830	13	5	NaN	NaN	NaN	0.051632	1	18220	18220		52.624	28.062	2	223360			17377	1086	10028	10291	13774	13774		117			-0.08300717437168714
MPLSEDFVWM	10	Oxidation (M)	_MPLSEDFVWM(Oxidation (M))_		MPLSEDFVWM(1)		M(-40)PLSEDFVWM(40)	0	0	1		ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;ENSG00000092036|ENST00000541587|HAUS4	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	ENST00000554651.5_1_14:23417204-23426210:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.7777673052	2	635.777767	1269.54098	1.7096	0.0010869	-1.921	-0.0012214	-0.21142	-0.00013441	635.7765380511963	30.8	0.36199	30.794	30.649	31.011	-0.0057545	1143	100	0.9332562	0.060536623	0.93173677	377.86203	0	24.510406						930	16	6	NaN	NaN	NaN	0.12649	1	17403	17403		42.318	23.154	2	231880			17378	1086	10028	10291	13775	13775		117			-0.08300717437168714
MPLSISVAL	9	Unmodified	_MPLSISVAL_					0	0	0		nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5328660761	1	930.532866	929.52559	1.2349	0.0011491	-0.17266	-0.00016067	1.0622	0.00098843	930.53201765111	31.549	0.19312	31.549	31.477	31.67	0	300	67	1.4411188	0.03916776	1.4411188	292.89426	0	7.9605103						240	9	2	NaN	NaN	NaN	0.023074	1	6601	6601		68.108	29.19	1	45345			17379	5492	10029	10292	13776	13776					0.05800783827965006
MPLSISVAL	9	Unmodified	_MPLSISVAL_					0	0	0		nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.5328660761	1	930.532866	929.52559	0.55937	0.00052051	0.43793	0.00040751	0.9973	0.00092802	930.5331700804022	31.524	0.16896	31.519	31.471	31.64	-0.0044174	297	73	1.4428991	0.042733073	1.4413797	293.25607	0	8.68512						230	8	2	NaN	NaN	NaN	0.03623	1	6465	6465		52.758	21.197	1	45835			17380	5492	10029	10292	13777	13777					0.05800783827965006
MPLSISVAL	9	Oxidation (M)	_M(Oxidation (M))PLSISVAL_		M(1)PLSISVAL		M(44)PLSISVAL	0	0	1		nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5277806982001	1	946.527781	945.520504	1.4267	0.0013504	-0.32613	-0.00030869	1.1006	0.0010417	946.528329503616	29.136	0.16892	29.136	29.063	29.232	0	285	55	1.4500183	0.032022476	1.4500183	294.63022	0	6.5066833						142	8	2	NaN	NaN	NaN	0.056143	1	6971	6971		44.302	19.341	1	15830			17381	5492	10029	10293	13778	13778		569			0.04556479965356175
MPLSISVAL	9	Oxidation (M)	_M(Oxidation (M))PLSISVAL_		M(1)PLSISVAL		M(53)PLSISVAL	0	0	1		nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5277806982001	1	946.527781	945.520504	1.2322	0.0011663	-0.5277	-0.00049948	0.70447	0.0006668	946.5267646369336	29.135	0.14482	29.127	29.079	29.224	-0.0077229	276	61	1.4553556	0.0355767	1.4538362	295.71472	0	7.228882						159	7	3	NaN	NaN	NaN	0.03623	1	6838	6838		52.758	27.797	1	14203			17382	5492	10029	10293	13779	13779		569			0.04556479965356175
MPLYNFPQ	8	Unmodified	_MPLYNFPQ_					0	0	0		nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4;ENST00000466440.1_1_1:52890958-52897138:-|nuORF	nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.2442206616	2	505.244221	1008.47389	1.76	0.00088923	-2.342	-0.0011833	-0.58199	-0.00029404	505.2433475036758	15.75	0.071966	15.75	15.702	15.774	0	1305	46	0.83389086	0.027683675	0.83389086	338.56927	0	11.239868						171	4	4	NaN	NaN	NaN	0.77489	1	8915	8915		12.588	0	1	30837			17383	2888	10030	10294	13780	13780					-0.030009598659262338
MPMGSLEHEGL	11	Unmodified	_MPMGSLEHEGL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.7730162783	2	600.773016	1199.53148	1.3959	0.00083862	-2.0884	-0.0012546	-0.69245	-0.000416	600.7719619594076	21.609	0.09635	21.609	21.561	21.657	0	1188	55	0.90571284	0.033082366	0.90571284	366.94034	0	13.402985						179	5	5	NaN	NaN	NaN	7.9405E-05	1	16454	16454		87.778	67.265	1	33955			17384	5118	10031	10295	13781	13781					-0.06030485722681078
MPMGSLEHEGL	11	Unmodified	_MPMGSLEHEGL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.7730162783	2	600.773016	1199.53148	1.1037	0.00066307	-2.8642	-0.0017207	-1.7605	-0.0010577	600.7713607719027	21.609	0.048101	21.595	21.571	21.619	-0.013897	1188	49	0.90571284	0.029406548	0.9041934	366.94034	0	11.913757						101	3	4	NaN	NaN	NaN	0.21983	1	15805	15805		28.495	18.135	1	23487			17385	5118	10031	10295	13782	13782					-0.06030485722681078
MPMGSLEHEGL	11	Oxidation (M)	_MPM(Oxidation (M))GSLEHEGL_		M(0.03)PM(0.97)GSLEHEGL		M(-15)PM(15)GSLEHEGL	0	0	1		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.77047358935	2	608.770474	1215.52639	1.7828	0.0010853	0.3815	0.00023224	2.1643	0.0013176	608.7704584222098	18.724	0.21598	18.724	18.676	18.892	0	1185	64	0.90755045	0.03859818	0.90755045	367.6298	0	15.635345						266	10	3	NaN	NaN	NaN	0.085722	1	16861	16861		40.957	28.908	2	39337			17386	5118	10031	10296	13783	13783		537			-0.07274789585312647
MPMLEEAL	8	Unmodified	_MPMLEEAL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4420021583002	1	933.442002	932.434726	1.7904	0.0016712	-1.9503	-0.0018205	-0.15992	-0.00014927	933.4390250361578	28.436	0.072376	28.436	28.388	28.46	0	333	64	1.4215236	0.037429094	1.4215236	288.89853	0	7.606781						105	4	2	NaN	NaN	NaN	0.74229	1	6650	6650		16.417	2.6796	1	9088.3			17387	5630	10032	10297	13784	13784					-0.03419428211805098
MPMLEEAL	8	Unmodified						0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	933.442002	932.434726	1.4044	0.0013109	-4.9644	-0.004634	-3.56	-0.0033231	933.4374411104283	28.435	0.072426	28.426	28.402	28.474	-0.0089798	327	64	1.425088	0.037429094	1.4235686	289.623		7.606781	-0.0048218	-0.0014613	0.0010225	NaN	16.417	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7911.8			17388	5630	10032	10297							-0.03419428211805098
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.25118841395005	2	502.251188	1002.48782	1.4227	0.00071454	-2.1501	-0.0010799	-0.72743	-0.00036535	502.2505640904195	31.839	0.21721	31.839	31.79	32.008	0	1299	139	0.8375814	0.084800184	0.8375814	340.09503	0	34.432617						820	10	5	NaN	NaN	NaN	0.023074	1	8690	8690		68.108	33.67	1	208800			17389	3331;3938	10033	10298	13785	13785					-0.013320504291414181
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4951003613002	1	1003.4951	1002.48782	1.6577	0.0016635	0.30168	0.00030273	1.9594	0.0019662	1003.4955877256215	31.863	0.28963	31.863	31.766	32.056	0	219	151	1.4891195	0.088781714	1.4891195	302.32822	0	18.024872						1144	13	5	NaN	NaN	NaN	0.026295	1	8692	8692		63.958	35.292	1	311630			17390	3331;3938	10033	10298	13786	13786					-0.013320504291414181
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.25118841395005	2	502.251188	1002.48782	0.86118	0.00043253	-1.9559	-0.00098235	-1.0947	-0.00054982	502.25073206783117	31.838	0.33783	31.833	31.785	32.123	-0.0044155	1296	139	0.8394264	0.08480942	0.83790696	340.84418	0	34.43634						865	15	5	NaN	NaN	NaN	0.023074	1	8515	8515		68.108	30.806	1	225830			17391	3331;3938	10033	10298	13787	13787					-0.013320504291414181
MPMNVADLI	9	Unmodified	_MPMNVADLI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4951003613002	1	1003.4951	1002.48782	1.2739	0.0012784	-0.23434	-0.00023516	1.0396	0.0010432	1003.4956581441309	31.838	0.21722	31.833	31.761	31.978	-0.0044155	216	166	1.4908947	0.09767544	1.4893752	302.68863	0	19.830536						982	10	6	NaN	NaN	NaN	0.024221	1	8517	8517		66.656	30.07	1	286880			17392	3331;3938	10033	10298	13788	13788					-0.013320504291414181
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.768)PM(0.232)NVADLI		M(5.2)PM(-5.2)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2486457250001	2	510.248646	1018.48274	2.2593	0.0011528	-2.6032	-0.0013283	-0.34392	-0.00017548	510.24755085667215	28.412	0.24134	28.412	28.339	28.581	0	1218	151	0.8873258	0.09214425	0.8873258	360.21683	0	37.406677						994	11	4	NaN	NaN	NaN	0.043119	1	9310	9310		49.833	13.246	2	244030			17393	3331;3938	10033	10299	13789	13789		370;371			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.985)PM(0.015)NVADLI		M(18)PM(-18)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.4900149834002	1	1019.49001	1018.48274	2.6343	0.0026856	2.2308	0.0022743	4.865	0.0049599	1019.4901966850322	29.474	0.21725	29.474	29.449	29.667	0	144	163	1.533442	0.09576225	1.533442	311.26047	0	19.437958						745	10	4	NaN	NaN	NaN	0.032826	1	9312	9312		55.413	30.452	2	219180			17394	3331;3938	10033	10299	13790	13790		370;371			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.99)PM(0.01)NVADLI		M(20)PM(-20)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.2486457250001	2	510.248646	1018.48274	1.3128	0.00066987	-2.2086	-0.0011269	-0.89579	-0.00045708	510.24790780611505	28.435	0.21719	28.426	28.354	28.571	-0.0089798	1218	148	0.8873258	0.09028673	0.8858064	360.21683	0	36.652588						1054	10	4	NaN	NaN	NaN	0.014943	1	9122	9122		78.398	34.095	2	255020			17395	3331;3938	10033	10299	13791	13791		370;371			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.5)PM(0.5)NVADLI		M(0)PM(0)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.2486457250001	2	510.248646	1018.48274	0.88413	0.00045113	-1.7752	-0.00090581	-0.89109	-0.00045468	510.2486822828455	29.497	0.14475	29.49	29.393	29.538	-0.0070648	1308	115	0.83204526	0.070075035	0.8305259	337.77527	0	28.44751						329	7	6	NaN	NaN	NaN	0.062072	1	9123	9123		41.785	13.996	2	35397			17396	3331;3938	10033	10299	13792	13792		370;371			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_MPM(Oxidation (M))NVADLI_		M(0.087)PM(0.913)NVADLI		M(-10)PM(10)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.4900149834002	1	1019.49001	1018.48274	1.7383	0.0017721	-1.4283	-0.0014561	0.30995	0.00031599	1019.4897071821183	28.411	0.26543	28.402	28.33	28.595	-0.0089798	210	130	1.4944444	0.076259136	1.4929249	303.3447	0	15.479187						733	12	5	NaN	NaN	NaN	0.055351	1	9124	9124		44.638	15.04	2	141740			17397	3331;3938	10033	10299	13793	13793		370;371			-0.02576354291750249
MPMNVADLI	9	Oxidation (M)	_M(Oxidation (M))PMNVADLI_		M(0.994)PM(0.006)NVADLI		M(22)PM(-22)NVADLI	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.4900149834002	1	1019.49001	1018.48274	1.7803	0.001815	0.34719	0.00035396	2.1275	0.002169	1019.4902527103326	29.497	0.21718	29.49	29.442	29.659	-0.0070648	144	157	1.533442	0.09220576	1.5319226	311.26047	0	18.716064						546	10	3	NaN	NaN	NaN	0.024221	1	9125	9125		66.656	37.058	2	173950			17398	3331;3938	10033	10299	13794	13794		370;371			-0.02576354291750249
MPMNVADLI	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))NVADLI_		M(1)PM(1)NVADLI		M(43)PM(43)NVADLI	0	0	2		ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.4849296055002	1	1035.48493	1034.47765	2.3579	0.0024415	4.1259	0.0042723	6.4837	0.0067138	1035.49057383185	25.926	0.24132	25.926	25.853	26.094	0	180	133	1.5121819	0.078053236	1.5121819	306.88162	0	15.840088						673	11	3	NaN	NaN	NaN	0.059222	1	9957	9957		42.995	14.099	1	149550			17399	3331;3938	10033	10300	13795	13795		370;371			-0.0382065815435908
MPMQDIKMIL	10	Unmodified	_MPMQDIKMIL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3160053962001	2	610.316005	1218.61746	1.494	0.00091181	-4.9265	-0.0030067	-3.4325	-0.0020949	610.3137476736983	28.194	0.12068	28.194	28.194	28.315	0	1170	85	0.91673553	0.05141151	0.91673553	371.33994	0	20.825134						337	6	4	NaN	NaN	NaN	0.0072459	1	16952	16952		74.794	51.708	1	92253			17400	5429	10034	10301	13796	13796					0.016893828584898074
MPMQDIKMIL	10	Unmodified	_MPMQDIKMIL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3160053962001	2	610.316005	1218.61746	0.79403	0.00048461	-7.5728	-0.0046218	-6.7788	-0.0041372	610.3114150196554	28.218	0.16896	28.209	28.112	28.281	-0.0089779	1170	82	0.91673553	0.049583375	0.9152161	371.33994	0	20.084625						357	8	5	NaN	NaN	NaN	0.019258	1	16271	16271		63.995	39.433	1	100370			17401	5429	10034	10301	13797	13797					0.016893828584898074
MPMQDIKMIL	10	Oxidation (M)	_MPM(Oxidation (M))QDIKMIL_		M(0.104)PM(0.896)QDIKMIL		M(-9.4)PM(9.4)QDIKM(-33)IL	0	0	1		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3134627072501	2	618.313463	1234.61237	1.3395	0.00082825	-5.7588	-0.0035607	-4.4192	-0.0027325	618.3110936575558	25.033	0.12069	25.033	24.912	25.033	0	1149	73	0.92958635	0.044038475	0.92958635	376.49072	0	17.835968						242	6	4	NaN	NaN	NaN	0.095478	1	17389	17389		46.588	28.618	3	57545			17402	5429	10034	10302	13798	13798		561;562;563			0.004450789958809764
MPMQDIKMIL	10	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))QDIKMIL_		M(1)PM(1)QDIKMIL		M(47)PM(41)QDIKM(-41)IL	0	0	2		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3109200183002	2	626.31092	1250.60729	1.5818	0.0009907	-2.6817	-0.0016796	-1.0999	-0.00068886	626.311194057797	23.513	0.14476	23.5	23.427	23.572	-0.013294	1149	88	0.92958635	0.053233266	0.9280669	376.43747	0	21.556915						448	7	4	NaN	NaN	NaN	0.037492	1	17032	17032		56.466	39.607	3	49129			17403	5429	10034	10303	13799	13799		561;562;563			-0.007992248667278545
MPMQDIKMIL	10	2 Oxidation (M)	_M(Oxidation (M))PMQDIKM(Oxidation (M))IL_		M(0.884)PM(0.117)QDIKM(1)IL		M(8.8)PM(-8.8)QDIKM(35)IL	0	0	2		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3109200183002	2	626.31092	1250.60729	1.4181	0.00088815	-2.2363	-0.0014006	-0.81827	-0.00051249	626.3095968197357	23.658	0.048162	23.645	23.621	23.669	-0.013048	1164	61	0.9204082	0.036726475	0.91888875	372.72076	0	14.872437						115	3	2	NaN	NaN	NaN	0.14791	1	17033	17033		40.006	18.235	3	20438			17404	5429	10034	10303	13800	13800		561;562;563			-0.007992248667278545
MPMVTDNKM	9	Unmodified	_MPMVTDNKM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.74013058865	2	533.740131	1065.46571	1.6522	0.00088182	-3.5085	-0.0018726	-1.8563	-0.00099078	533.7389991040765	18.218	0.16792	18.204	18.132	18.3	-0.01395	1287	100	0.8449601	0.06086451	0.84344065	342.8164	0	24.693878						347	8	4	NaN	NaN	NaN	0.19268	1	11091	11091		25.801	2.4665	1	33418			17405	4973	10035	10304	13801	13801					-0.06440598169228906
MPMVTDNKM	9	Oxidation (M)	_MPMVTDNKM(Oxidation (M))_		MPMVTDNKM(1)		M(-40)PM(-34)VTDNKM(34)	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7375878997	2	541.737588	1081.46062	1.6001	0.00086682	-1.1583	-0.00062749	0.44177	0.00023933	541.739647848748	15.46	0.16789	15.448	15.376	15.544	-0.012202	1284	61	0.8468043	0.03688556	0.8452849	343.49976	0	14.962341						218	8	3	NaN	NaN	NaN	0.070055	1	11715	11715		40.154	23.296	3	20840			17406	4973	10035	10305	13802	13802		519			-0.07684902031860474
MPNENIPEL	9	Unmodified	_MPNENIPEL_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75514948865	2	528.755149	1055.49575	1.3709	0.00072487	-6.265	-0.0033126	-4.8941	-0.0025878	528.7526750116315	25.177	0.19299	25.165	25.117	25.31	-0.012011	1293	82	0.84127116	0.049782038	0.8397517	341.3609	0	20.199982						396	9	4	NaN	NaN	NaN	0.03618	1	10639	10639		52.78	17.483	1	58911			17407	1999	10036	10306	13803	13803					-0.029781999080341848
MPNLDSVTL	9	Unmodified	_MPNLDSVTL_					0	0	0		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4972088513001	1	989.497209	988.489932	2.3563	0.0023316	-0.93902	-0.00092916	1.4173	0.0014024	989.4973975031975	28.074	0.24132	28.074	28.026	28.267	0	231	79	1.4820169	0.04618597	1.4820169	300.94403	0	9.378693						362	11	4	NaN	NaN	NaN	0.03533	1	8159	8159		53.14	19.442	1	62217			17408	2810	10037	10307	13804	13804					-0.004772984196847574
MPNLDSVTL	9	Unmodified	_MPNLDSVTL_					0	0	0		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.4972088513001	1	989.497209	988.489932	1.4305	0.0014155	0.47257	0.0004676	1.9031	0.0018831	989.497490738588	28.097	0.24137	28.088	27.968	28.209	-0.0089798	228	82	1.4837929	0.04796493	1.4822735	301.30466	0	9.739929						355	11	4	NaN	NaN	NaN	0.03533	1	7993	7993		53.14	18.702	1	62955			17409	2810	10037	10307	13805	13805					-0.004772984196847574
MPNLDSVTL	9	Oxidation (M)	_M(Oxidation (M))PNLDSVTL_		M(1)PNLDSVTL		M(45)PNLDSVTL	0	0	1		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.4921234734002	1	1005.49212	1004.48485	1.817	0.0018269	-1.797	-0.0018069	0.019942	2.0051E-05	1005.4927528740404	25.129	0.1689	25.129	25.057	25.226	0	231	73	1.4820169	0.042628646	1.4820169	300.87814	0	8.654449						235	8	3	NaN	NaN	NaN	0.054111	1	8758	8758		45.165	24.716	1	18590			17410	2810	10037	10308	13806	13806		326			-0.017216022822935884
MPNLDSVTL	9	Oxidation (M)	_M(Oxidation (M))PNLDSVTL_		M(1)PNLDSVTL		M(41)PNLDSVTL	0	0	1		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.4921234734002	1	1005.49212	1004.48485	1.7778	0.0017875	-0.7941	-0.00079846	0.98366	0.00098907	1005.4921812039772	25.105	0.096457	25.093	25.069	25.165	-0.012011	228	79	1.4837929	0.046176195	1.4822735	301.23868	0	9.374664						163	5	3	NaN	NaN	NaN	0.064504	1	8585	8585		40.957	15.156	1	14845			17411	2810	10037	10308	13807	13807		326			-0.017216022822935884
MPNSPAPHF	9	Unmodified	_MPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.2316446026	2	499.231645	996.448736	1.6429	0.0008202	-1.6619	-0.00082966	-0.018962	-9.4664E-06	499.2306701862348	18.578	0.16794	18.564	18.492	18.66	-0.01395	1317	52	0.8265074	0.03137821	0.82498795	335.626	0	12.741974						166	8	3	NaN	NaN	NaN	0.032826	1	8266	8266		55.413	36.128	1	14491			17412	1865	10038	10309	13808	13808					-0.04963014668510368
MPNVKVAVF	9	Unmodified	_MPNVKVAVF_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.78351299760004	2	502.783513	1003.55247	1.4903	0.00074928	-3.9755	-0.0019988	-2.4853	-0.0012496	502.7821589653598	24.092	0.048244	24.092	24.068	24.116	0	1323	46	0.8228144	0.027704597	0.8228144	334.09418	0	11.2491455						51	3	2	NaN	NaN	NaN	0.62619	1	8739	8739		4.4131	1.9516	1	5352.3			17413	5782	10039	10310	13809	13809					0.05083892439165538
MPPGAEGG	8	Unmodified	_MPPGAEGG_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3079515179002	1	715.307952	714.300675	1.1781	0.00084269	7.1131	0.0050881	8.2912	0.0059307	715.313122906906	26.698	0.096588	26.698	26.674	26.77	0	672	46	1.2188909	0.027056336	1.2188909	248.8152	0	5.5230865						95	5	2	NaN	NaN	NaN	0.84207	1	3498	3498		3.5732	0	1	7738.5			17414	493	10040	10311	13810	13810					-0.06790325922349894
MPPIHEDHL	9	Unmodified	_MPPIHEDHL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	363.5112980700333	3	363.511298	1087.51206	1.8045	0.00065595	-1.8228	-0.0006626	-0.018313	-6.6569E-06	363.5105666515754	16.494	0.21577	16.494	16.398	16.614	0	1452	40	0.74322224	0.024117589	0.74322224	452.18683	0	14.673462						169	10	2	NaN	NaN	NaN	0.29681	1	12269	12269		16.858	0.27415	1	34075			17415	1865	10041	10312	13811	13811					-0.028190739512638174
MPPIHEDHL	9	Unmodified	_MPPIHEDHL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.76330887175	2	544.763309	1087.51206	1.6469	0.00089716	1.765	0.00096153	3.4119	0.0018587	545.2666001283253	16.47	0.26371	16.47	16.374	16.638	0	1263	67	0.85970795	0.040539026	0.85970795	348.70963	0	16.443207						396	12	4	NaN	NaN	NaN	0.03623	1	12270	12270		52.758	27.797	1	33341			17416	1865	10041	10312	13812	13812					-0.028190739512638174
MPPIHEDHL	9	Unmodified	_MPPIHEDHL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.5112980700333	3	363.511298	1087.51206	2.0971	0.00076231	-1.3325	-0.00048439	0.76453	0.00027792	363.51066212184276	16.491	0.095861	16.478	16.406	16.502	-0.012995	1452	40	0.74322224	0.024117589	0.7417028	452.18683	0	14.673462						98	5	2	NaN	NaN	NaN	0.094712	1	11960	11960		25.801	9.2168	1	17377			17417	1865	10041	10312	13813	13813					-0.028190739512638174
MPPIHEDHL	9	Unmodified	_MPPIHEDHL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.76330887175	2	544.763309	1087.51206	1.833	0.00099857	0.40636	0.00022137	2.2394	0.0012199	545.2657230332017	16.491	0.14381	16.478	16.406	16.55	-0.012995	1266	73	0.85786515	0.044214845	0.8563457	347.96216	0	17.934143						202	7	2	NaN	NaN	NaN	0.094712	1	11961	11961		36.586	21.411	1	35643			17418	1865	10041	10312	13814	13814					-0.028190739512638174
MPPPINPIL	9	Unmodified	_MPPPINPIL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.28588851105	2	496.285889	990.557224	1.8294	0.00090789	-1.0784	-0.00053518	0.751	0.00037271	496.28593108235856	29.667	0.072409	29.667	29.667	29.739	0	1305	34	0.83389086	0.020301342	0.83389086	338.6517	0	8.244568						42	4	2	NaN	NaN	NaN	0.60063	1	8248	8248		5.4659	1.0528	1	2694.1			17419	4367	10042	10313	13815	13815					0.06156776581917711
MPPPINPIL	9	Unmodified	_MPPPINPIL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.28588851105	2	496.285889	990.557224	0.94042	0.00046672	-2.0284	-0.0010067	-1.088	-0.00053996	496.28544361695896	29.521	0.096497	29.514	29.466	29.562	-0.0070648	1308	52	0.83204526	0.031374753	0.8305259	337.9022	0	12.741608						103	5	2	NaN	NaN	NaN	0.3389	1	8078	8078		16.417	3.8288	1	7472.1			17420	4367	10042	10313	13816	13816					0.06156776581917711
MPPWENIWL	9	Unmodified	_MPPWENIWL_					0	0	0		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;ENST00000313432.5_1_12:110783758-110784272:+|nuORF	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2917021704501	2	593.291702	1184.56885	1.2691	0.00075295	-2.3695	-0.0014058	-1.1004	-0.00065284	593.7921147925467	36.181	0.2653	36.181	36.061	36.326	0	1200	88	0.89836043	0.053296506	0.89836043	364.01385	0	21.595642						575	12	4	NaN	NaN	NaN	0.14227	1	15995	15995		40.154	14.353	1	82804			17421	4945	10043	10314	13817	13817					-0.01605026394736342
MPQDLSEAL	9	Unmodified	_MPQDLSEAL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4764734092001	1	1003.47647	1002.4692	1.6901	0.001696	1.539	0.0015444	3.2292	0.0032404	1003.4775972342047	24.864	0.072378	24.864	24.84	24.912	0	243	94	1.4749115	0.055070877	1.4749115	299.44373	0	11.180756						133	4	2	NaN	NaN	NaN	0.052553	1	8685	8685		45.827	18.038	1	13630			17422	1216	10044	10315	13818	13818					-0.03193888799353317
MPQHIMAIL	9	Unmodified	_MPQHIMAIL_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2828228933502	2	527.282823	1052.55109	1.7739	0.00093537	-2.228	-0.0011748	-0.45401	-0.00023939	527.2821569291825	25.636	0.16883	25.624	25.576	25.745	-0.0116	1263	73	0.85970795	0.04422444	0.8581885	348.8545	0	17.945465						309	8	3	NaN	NaN	NaN	0.25448	1	10520	10520		21.835	1.2795	1	61884			17423	4400	10045	10316	13819	13819					0.026919350787693475
MPQHIMAIL	9	Unmodified						0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.282823	1052.55109	2.0523	0.0010821	-2.9488	-0.0015549	-0.89655	-0.00047274	527.2817173431406	25.612	0.12063	25.612	25.564	25.684	0	1260	73	0.8615505	0.04422444	0.8615505	349.6022		17.945496	-0.0061462	-0.00042117	0.001681	NaN	21.835	281	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64457			17424	4400	10045	10316							0.026919350787693475
MPQIETRVIL	10	Unmodified	_MPQIETRVIL_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3444660224501	2	600.344466	1198.67438	1.4851	0.00089159	-1.9657	-0.0011801	-0.48056	-0.0002885	600.3438551609073	25.153	0.12065	25.153	25.105	25.226	0	1170	58	0.91673553	0.034888268	0.91673553	371.4091	0	14.134735						204	6	4	NaN	NaN	NaN	0.10967	1	16432	16432		44.633	15.738	1	36907			17425	1955	10046	10317	13820	13820					0.08298889730872361
MPQIETRVIL	10	Unmodified	_MPQIETRVIL_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.3444660224501	2	600.344466	1198.67438	1.2399	0.00074438	-1.974	-0.0011851	-0.73402	-0.00044067	600.3433361484541	25.177	0.12066	25.165	25.117	25.238	-0.012011	1173	58	0.91489893	0.034892023	0.9133795	370.665	0	14.136261						170	6	3	NaN	NaN	NaN	0.13615	1	15782	15782		41.017	20.503	1	32665			17426	1955	10046	10317	13821	13821					0.08298889730872361
MPQKERESI	9	Unmodified	_MPQKERESI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2871481088001	2	559.287148	1116.55974	1.5228	0.00085169	-2.1303	-0.0011915	-0.60751	-0.00033977	559.2863658618786	12.076	0.24018	12.076	12.028	12.268	0	1236	58	0.876284	0.034986377	0.876284	355.3174	0	14.18634						282	11	4	NaN	NaN	NaN	0.022082	1	13533	13533		69.363	42.067	1	27907			17427	3331	10047	10318	13822	13822					0.0061258024893504626
MPQKERESI	9	Unmodified	_MPQKERESI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.1938575614	3	373.193858	1116.55974	1.4489	0.00054072	-0.93747	-0.00034986	0.51141	0.00019086	373.1937111700301	12.078	0.14401	12.07	12.022	12.166	-0.0081854	1527	43	0.69677675	0.026044786	0.6952573	423.79102	0	15.840881						113	7	2	NaN	NaN	NaN	0.10363	1	13138	13138		31.198	10.685	1	10967			17428	3331	10047	10318	13823	13823					0.0061258024893504626
MPQKERESIM	10	Unmodified	_MPQKERESIM_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8073904119001	2	624.80739	1247.60023	2.1256	0.0013281	-0.68737	-0.00042947	1.4383	0.00089863	624.8069118703743	13.781	0.14416	13.781	13.733	13.877	0	1134	61	0.9387595	0.03669876	0.9387595	380.16217	0	14.861603						147	7	3	NaN	NaN	NaN	0.13615	1	17717	17717		41.017	25.195	1	11760			17429	3331	10048	10319	13824	13824					-0.013668214229483056
MPQKERESIM	10	Unmodified						0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.80739	1247.60023	1.1184	0.00069879	-0.35904	-0.00022433	0.75937	0.00047446	624.806986507239	13.853	0.16778	13.842	13.794	13.962	-0.010673	1134	40	0.9387595	0.023845196	0.93724006	380.16217		9.656403	0.030746	0.00024254	-0.00075972	NaN	41.017	98	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8420.7			17430	3331	10048	10319							-0.013668214229483056
MPQKERESIM	10	Oxidation (M)	_MPQKERESIM(Oxidation (M))_		MPQKERESIM(1)		M(-51)PQKERESIM(51)	0	0	1		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.8048477229501	2	632.804848	1263.59514	1.2689	0.00080298	-0.38037	-0.0002407	0.88854	0.00056227	632.8044901245742	12.006	0.1679	11.998	11.95	12.118	-0.0081863	1119	64	0.9479278	0.03851497	0.94640833	383.82178	0	15.59494						180	8	3	NaN	NaN	NaN	0.060038	1	17285	17285		51.467	28.381	2	15348			17431	3331	10048	10320	13825	13825		372			-0.02611125285579874
MPQLEFKL	8	Unmodified	_MPQLEFKL_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.27552079000003	2	503.275521	1004.53649	1.3138	0.00066121	1.0677	0.00053735	2.3815	0.0011986	503.2747277514814	27.012	0.09654	27.012	26.988	27.084	0	1299	55	0.8375814	0.033214986	0.8375814	340.08563	0	13.486359						135	5	3	NaN	NaN	NaN	0.69825	1	8772	8772		19.164	8.5586	1	12717			17432	2305	10049	10321	13826	13826					0.0344018620226052
MPQPDFSF	8	Unmodified	_MPQPDFSF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4182302488001	1	968.41823	967.410954	1.9578	0.001896	0.2426	0.00023494	2.2004	0.0021309	968.419028056443	28.122	0.096527	28.122	28.098	28.194	0	300	52	1.4411188	0.030261159	1.4411188	292.72678	0	6.1467896						126	5	3	NaN	NaN	NaN	0.56786	1	7531	7531		27.296	10.88	1	10803			17433	1944	10050	10322	13827	13827					-0.07405525653973655
MPQPDFSF	8	Unmodified	_MPQPDFSF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.4182302488001	1	968.41823	967.410954	1.0556	0.0010222	2.7284	0.0026422	3.784	0.0036645	968.4211242717181	28.121	0.14485	28.112	28.088	28.233	-0.0089779	294	58	1.4446791	0.033814073	1.4431597	293.44995	0	6.868469						116	7	2	NaN	NaN	NaN	0.6117	1	7387	7387		24.562	4.0066	1	10180			17434	1944	10050	10322	13828	13828					-0.07405525653973655
MPQPDFSFL	9	Unmodified	_MPQPDFSFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5022942292	1	1081.50229	1080.49502	1.1518	0.0012457	0.57474	0.00062158	1.7265	0.0018672	1081.5033323707082	32.466	0.16889	32.466	32.418	32.587	0	159	70	1.5245869	0.040733576	1.5245869	309.22568	0	8.26181						345	8	4	NaN	NaN	NaN	0.032689	1	11993	11993		55.592	10.427	1	41082			17435	1944	10051	10323	13829	13829					-0.042009945570725904
MPQPDFSFL	9	Unmodified	_MPQPDFSFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5022942292	1	1081.50229	1080.49502	1.1999	0.0012977	-0.11924	-0.00012896	1.0806	0.0011687	1081.5015927413688	32.441	0.21717	32.438	32.39	32.607	-0.0031052	153	76	1.5281296	0.044266224	1.5266101	309.9442	0	8.9783325						376	10	4	NaN	NaN	NaN	0.017558	1	11679	11679		75.089	22.465	1	42152			17436	1944	10051	10323	13830	13830					-0.042009945570725904
MPQSMPEYAL	10	Unmodified	_MPQSMPEYAL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.7646599299501	2	583.76466	1165.51477	2.5	0.0014594	-0.25395	-0.00014825	2.2461	0.0013112	583.7635287589646	25.66	0.19305	25.66	25.588	25.781	0	1206	94	0.894683	0.0570091	0.894683	362.59198	0	23.10431						442	9	4	NaN	NaN	NaN	0.1159	1	15317	15317		43.776	27.954	1	89122			17437	1399	10052	10324	13831	13831					-0.0613698660861246
MPREELDLL	9	Unmodified	_MPREELDLL_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2918991357001	2	558.291899	1114.56925	1.352	0.0007548	-0.32569	-0.00018183	1.0263	0.00057296	558.2916832074363	24.912	0.12062	24.9	24.827	24.948	-0.012392	1218	76	0.8873258	0.045980036	0.8858064	359.8025	0	18.64447						165	6	2	NaN	NaN	NaN	0.44834	1	13079	13079		11.739	1.3787	1	17775			17438	571	10053	10325	13832	13832					0.016543485344527653
MPRVGSAKW	9	Unmodified	_MPRVGSAKW_					0	0	0		ENST00000567586.1_1_16:70434689-70434863:-|nuORF	ENST00000567586.1_1_16:70434689-70434863:-|nuORF	ENST00000567586.1_1_16:70434689-70434863:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2763864572502	2	516.276386	1030.53822	1.3448	0.00069428	-0.73019	-0.00037698	0.61459	0.0003173	516.2758519265593	19.876	0.1444	19.861	19.813	19.958	-0.014141	1296	55	0.8394264	0.03320414	0.83790696	340.71854	0	13.477386						163	7	3	NaN	NaN	NaN	0.48181	1	9601	9601		10.36	0.74852	1	19970			17439	7634	10054	10326	13833	13833					0.024172400108909642
MPRVGSAKW	9	Unmodified						0	0	0		ENST00000567586.1_1_16:70434689-70434863:-|nuORF	ENST00000567586.1_1_16:70434689-70434863:-|nuORF	ENST00000567586.1_1_16:70434689-70434863:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.276386	1030.53822	2.4171	0.0012479	2.3616	0.0012192	4.7787	0.0024671	516.2808125720958	20.021	0.024035	20.021	20.021	20.045	0	1290	31	0.84311575	0.01844281	0.84311575	342.216		7.4858093	0.079581	0.0021249	0.0026044	NaN	10.36	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648.5			17440	7634	10054	10326							0.024172400108909642
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.24643738705	2	497.246437	992.478322	2.3745	0.0011807	-2.1742	-0.0010811	0.20033	9.9614E-05	497.24540993186014	18.652	0.071936	18.652	18.628	18.7	0	1314	70	0.8283535	0.042452812	0.8283535	336.394	0	17.240082						224	4	5	NaN	NaN	NaN	0.23499	1	8306	8306		23.086	7.6231	1	64454			17441	1474	10055	10327	13834	13834					-0.018218187146771925
MPSASMTRL	9	Unmodified	_MPSASMTRL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.24643738705	2	497.246437	992.478322	1.5277	0.00075964	-1.1651	-0.00057936	0.36256	0.00018028	497.2457221728954	18.698	0.095953	18.684	18.636	18.731	-0.014059	1314	64	0.8283535	0.03876543	0.8268341	336.394	0	15.742645						251	5	4	NaN	NaN	NaN	0.015029	1	8140	8140		78.289	33.651	1	60266			17442	1474	10055	10327	13835	13835					-0.018218187146771925
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(41)PSASM(41)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2413520091501	2	513.241352	1024.46815	2.0901	0.0010727	-1.7191	-0.00088231	0.37098	0.0001904	513.240097109299	13.397	0.072043	13.397	13.349	13.421	0	1311	40	0.83019954	0.023997664	0.83019954	336.99973	0	9.741272						83	4	3	NaN	NaN	NaN	0.064504	1	9541	9541		40.957	23.158	1	8781.4			17443	1474	10055	10328	13836	13836		169;170			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(41)PSASM(41)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2413520091501	2	513.241352	1024.46815	1.0372	0.00053232	-1.4182	-0.00072788	-0.38104	-0.00019556	513.2409745204224	13.493	0.16798	13.483	13.339	13.507	-0.010098	1308	58	0.83204526	0.035077274	0.8305259	337.74896	0	14.2388						212	8	2	NaN	NaN	NaN	0.064504	1	9360	9360		40.957	20.508	1	30767			17444	1474	10055	10328	13837	13837		169;170			-0.04310426439906223
MPSDVLEVT	9	Unmodified	_MPSDVLEVT_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4812244361	1	990.481224	989.473948	2.0764	0.0020567	-0.32041	-0.00031736	1.756	0.0017393	990.4820462067518	24.888	0.12066	24.888	24.84	24.96	0	285	88	1.4500183	0.051594615	1.4500183	294.44223	0	10.476837						287	6	3	NaN	NaN	NaN	0.021105	1	8185	8185		70.6	34.013	1	42921			17445	4112	10056	10329	13838	13838					-0.021210046566011442
MPSDVLEVT	9	Unmodified						0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	990.481224	989.473948	1.6441	0.0016285	-0.43888	-0.0004347	1.2053	0.0011938	990.4815329241541	24.888	0.14475	24.875	24.827	24.972	-0.012394	285	109	1.4500183	0.06401777	1.4484988	294.44223		12.999542	-0.0062931	-4.802E-05	-0.00075972	NaN	70.6	318	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42381			17446	4112	10056	10329							-0.021210046566011442
MPSDVLEVT	9	Oxidation (M)	_M(Oxidation (M))PSDVLEVT_		M(1)PSDVLEVT		M(42)PSDVLEVT	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4761390582	1	1006.47614	1005.46886	1.8103	0.001822	-0.18212	-0.0001833	1.6282	0.0016387	1006.4764661130993	22.332	0.024117	22.332	22.308	22.332	0	282	61	1.4517976	0.035573006	1.4517976	294.7391	0	7.221924						70	2	2	NaN	NaN	NaN	0.062072	1	8788	8788		41.785	22.666	1	7350.2			17447	4112	10056	10330	13839	13839		444			-0.03365308519209975
MPSEDVVSL	9	Unmodified	_MPSEDVVSL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4655743719001	1	976.465574	975.458298	2.3266	0.0022719	-0.38132	-0.00037235	1.9453	0.0018995	976.4659836883678	25.081	0.45848	25.081	24.864	25.322	0	297	130	1.4428991	0.07661629	1.4428991	293.05444	0	15.560852						1033	20	5	NaN	NaN	NaN	0.04947	1	7755	7755		47.136	10.549	1	316540			17448	742	10057	10331	13840	13840					-0.030412911736448223
MPSEDVVSL	9	Unmodified	_MPSEDVVSL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4655743719001	1	976.465574	975.458298	2.2867	0.0022329	-0.7133	-0.00069651	1.5734	0.0015364	976.465173840867	25.081	0.36187	25.069	24.948	25.31	-0.012011	297	133	1.4428991	0.07840216	1.4413797	293.05444	0	15.923553						934	16	5	NaN	NaN	NaN	0.013281	1	7595	7595		82.96	33.127	1	293530			17449	742	10057	10331	13841	13841					-0.030412911736448223
MPSEDVVSL	9	Oxidation (M)	_M(Oxidation (M))PSEDVVSL_		M(1)PSEDVVSL		M(74)PSEDVVSL	0	0	1		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4604889940001	1	992.460489	991.453213	2.6138	0.0025941	-1.0313	-0.0010235	1.5825	0.0015706	992.4603409633925	23.007	0.26497	23.007	22.887	23.152	0	300	106	1.4411188	0.062289238	1.4411188	292.62708	0	12.648163						566	12	4	NaN	NaN	NaN	0.018156	1	8254	8254		74.332	42.771	1	118100			17450	742	10057	10332	13842	13842		77			-0.04285595036253653
MPSFPVSTL	9	Unmodified	_MPSFPVSTL_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.4964805698002	1	978.496481	977.489204	1.6491	0.0016136	-3.9736	-0.0038882	-2.3245	-0.0022745	978.4934072740336	29.256	0.19304	29.256	29.184	29.377	0	294	85	1.4446791	0.04980743	1.4446791	293.4075	0	10.115692						320	9	4	NaN	NaN	NaN	0.0094682	1	7817	7817		93.472	16.733	1	32011			17451	761	10058	10333	13843	13843					-0.00044093068731854146
MPSFPVSTL	9	Unmodified	_MPSFPVSTL_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.4964805698002	1	978.496481	977.489204	1.4737	0.001442	-3.7047	-0.0036251	-2.231	-0.002183	978.4938090150614	29.28	0.19307	29.272	29.127	29.32	-0.0077229	294	85	1.4446791	0.049812794	1.4431597	293.4075	0	10.11673						320	9	4	NaN	NaN	NaN	0.0094682	1	7655	7655		93.472	26.317	1	32112			17452	761	10058	10333	13844	13844					-0.00044093068731854146
MPSILADVF	9	Unmodified	_MPSILADVF_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5121306340001	1	992.512131	991.504854	1.5855	0.0015736	2.5863	0.0025669	4.1717	0.0041405	992.5142511418954	34.975	0.19287	34.975	34.879	35.072	0	219	157	1.4891195	0.09233296	1.4891195	302.37366	0	18.748718						617	9	4	NaN	NaN	NaN	0.043119	1	8267	8267		49.833	25.982	1	88971			17453	2466	10059	10334	13845	13845					0.008761934483004552
MPSILADVF	9	Unmodified	_MPSILADVF_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5121306340001	1	992.512131	991.504854	1.5625	0.0015508	3.232	0.0032078	4.7945	0.0047586	992.51588723563	34.95	0.21713	34.95	34.877	35.094	-4.5776E-05	216	145	1.4908947	0.08520329	1.4893752	302.7341	0	17.300964						648	10	4	NaN	NaN	NaN	0.011942	1	8104	8104		87.021	50.984	1	89915			17454	2466	10059	10334	13846	13846					0.008761934483004552
MPSILADVF	9	Oxidation (M)	_M(Oxidation (M))PSILADVF_		M(1)PSILADVF		M(55)PSILADVF	0	0	1		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5070452561001	1	1008.50705	1007.49977	1.457	0.0014694	-3.1991	-0.0032264	-1.7421	-0.001757	1008.5012643325697	32.152	0.26545	32.152	32.104	32.37	0	213	109	1.4926696	0.06390238	1.4926696	303.02856	0	12.9729						641	12	4	NaN	NaN	NaN	0.032764	1	8877	8877		55.494	32.159	1	86924			17455	2466	10059	10335	13847	13847		285			-0.0036811041430837577
MPSILADVF	9	Oxidation (M)	_M(Oxidation (M))PSILADVF_		M(1)PSILADVF		M(65)PSILADVF	0	0	1		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5070452561001	1	1008.50705	1007.49977	1.1011	0.0011105	-4.2909	-0.0043274	-3.1897	-0.0032169	1008.5010211875789	32.151	0.24128	32.148	32.099	32.341	-0.0037613	213	103	1.4926696	0.06036508	1.4911501	303.02856	0	12.254791						545	11	3	NaN	NaN	NaN	0.025843	1	8708	8708		64.55	42.715	1	82634			17456	2466	10059	10335	13848	13848		285			-0.0036811041430837577
MPSILITIL	9	Unmodified	_MPSILITIL_					0	0	0		nc|ENSG00000145864|P47870-3|GABRB2;GABRB3|p.E295Rfs*75|1|0.38|ENSG00000166206|chr15:26561129-26561129|C/-|frameshift_variant;nc|ENSG00000145864|P47870-4|GABRB2;nc|ENSG00000166206|P28472-4|GABRB3;nc|ENSG00000166206|P28472-3|GABRB3;nc|ENSG00000166206|P28472-2|GABRB3;ENSG00000166206|ENST00000311550|GABRB3;nc|ENSG00000145864|P47870-1|GABRB2;ENSG00000145864|ENST00000393959|GABRB2	nc|ENSG00000145864|P47870-3|GABRB2	nc|ENSG00000145864|P47870-3|GABRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.6111163971001	1	1000.61112	999.60384	1.049	0.0010496	-0.18787	-0.00018798	0.86114	0.00086166	1000.6113987260227	37.819	0.14426	37.819	37.771	37.915	0	159	64	1.5245869	0.037199378	1.5245869	309.5411	0	7.5526733						141	7	2	NaN	NaN	NaN	0.030391	1	8591	8591		58.599	8.5666	1	12358			17457	3537	10060	10336	13849	13849					0.10402216413206133
MPSILITIL	9	Unmodified	_MPSILITIL_					0	0	0		nc|ENSG00000145864|P47870-3|GABRB2;GABRB3|p.E295Rfs*75|1|0.38|ENSG00000166206|chr15:26561129-26561129|C/-|frameshift_variant;nc|ENSG00000145864|P47870-4|GABRB2;nc|ENSG00000166206|P28472-4|GABRB3;nc|ENSG00000166206|P28472-3|GABRB3;nc|ENSG00000166206|P28472-2|GABRB3;ENSG00000166206|ENST00000311550|GABRB3;nc|ENSG00000145864|P47870-1|GABRB2;ENSG00000145864|ENST00000393959|GABRB2	nc|ENSG00000145864|P47870-3|GABRB2	nc|ENSG00000145864|P47870-3|GABRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.6111163971001	1	1000.61112	999.60384	1.5979	0.0015989	-0.60588	-0.00060625	0.99202	0.00099263	1000.6096838156661	37.816	0.12027	37.819	37.771	37.891	0.0028229	159	49	1.5245869	0.028340816	1.5230675	309.5411	0	5.75412						148	6	3	NaN	NaN	NaN	0.03623	1	8414	8414		52.758	2.7257	1	11017			17458	3537	10060	10336	13850	13850					0.10402216413206133
MPSLENLDL	9	Unmodified	_MPSLENLDL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5077735375999	1	1031.50777	1030.5005	1.8919	0.0019515	-0.39155	-0.00040389	1.5004	0.0015476	1031.5075109426684	30.318	0.26546	30.318	30.173	30.439	0	213	112	1.4926696	0.06563914	1.4926696	302.93723	0	13.321442						646	12	5	NaN	NaN	NaN	0.013093	1	9792	9792		83.529	22.547	1	102810			17459	6200	10061	10337	13851	13851					-0.013533157652773298
MPSLENLDL	9	Unmodified	_MPSLENLDL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5077735375999	1	1031.50777	1030.5005	1.1413	0.0011773	-0.41166	-0.00042463	0.72968	0.00075267	1031.5078385234165	30.317	0.21716	30.311	30.238	30.456	-0.0064087	213	112	1.4926696	0.065632224	1.4911501	302.93723	0	13.320038						608	10	4	NaN	NaN	NaN	0.002766	1	9591	9591		108.71	50.512	1	97992			17460	6200	10061	10337	13852	13852					-0.013533157652773298
MPSLENLDL	9	Oxidation (M)	_M(Oxidation (M))PSLENLDL_		M(1)PSLENLDL		M(84)PSLENLDL	0	0	1		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5026881596998	1	1047.50269	1046.49541	1.2652	0.0013253	-0.84187	-0.00088186	0.42328	0.00044339	1047.5008992149894	27.325	0.096533	27.315	27.291	27.387	-0.010124	189	70	1.5068626	0.040794015	1.5053432	305.75595	0	8.277496						201	5	3	NaN	NaN	NaN	0.012861	1	10263	10263		84.233	39.594	1	18061			17461	6200	10061	10338	13853	13853		629			-0.025976196278861607
MPSLENLDL	9	Oxidation (M)						0	0	1		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1047.50269	1046.49541	1.7387	0.0018213	2.2153	0.0023205	3.954	0.0041418	1047.5035470468765	27.084	0.072426	27.084	27.06	27.133	0	204	43	1.4979934	0.024837732	1.4979934	303.9563		5.039795	-0.11521	0.0021059	-0.0036749	NaN	84.233	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5876.5			17462	6200	10061	10338				629			-0.025976196278861607
MPSLEVITL	9	Unmodified	_MPSLEVITL_					0	0	0		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45755312-45758250:-|nuORF	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5539954487	1	1002.554	1001.54672	1.1525	0.0011554	-0.91609	-0.00091843	0.2364	0.00023701	1002.5538120487998	32.489	0.12066	32.486	32.462	32.583	-0.0031013	168	103	1.5192716	0.060281873	1.5177522	308.4538	0	12.238892						335	6	4	NaN	NaN	NaN	0.01047	1	8489	8489		91.429	35.481	1	50273			17463	4053	10062	10339	13854	13854					0.04600749136818649
MPSLEVITL	9	Unmodified						0	0	0		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45755312-45758250:-|nuORF	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1002.554	1001.54672	1.5934	0.0015975	-0.039926	-4.0028E-05	1.5535	0.0015575	1002.5539677779188	32.514	0.12063	32.514	32.466	32.587	0	171	97	1.5174994	0.056747913	1.5174994	308.094		11.521362	0.014169	0.00045536	-0.00012636	NaN	91.429	249	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46226			17464	4053	10062	10339							0.04600749136818649
MPSLEVITL	9	Oxidation (M)	_M(Oxidation (M))PSLEVITL_		M(1)PSLEVITL		M(50)PSLEVITL	0	0	1		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45755312-45758250:-|nuORF	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5489100708	1	1018.54891	1017.54163	1.4911	0.0015188	-1.1078	-0.0011284	0.38331	0.00039042	1018.5480822226108	29.883	0.048248	29.876	29.828	29.876	-0.0070667	141	106	1.5352125	0.06202531	1.5336931	311.6237	0	12.590149						183	3	3	NaN	NaN	NaN	0.043119	1	9102	9102		49.833	23.101	1	17678			17465	4053	10062	10340	13855	13855		436			0.03356445274209818
MPSLEVITL	9	Oxidation (M)						0	0	1		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45755312-45758250:-|nuORF	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1018.54891	1017.54163	2.5117	0.0025583	-3.0842	-0.0031414	-0.57243	-0.00058305	1018.5462335087542	29.86	0.12066	29.86	29.811	29.932	0	141	106	1.5352125	0.06202531	1.5352125	311.62372		12.590149	-0.0080729	-0.0009186	0.00075972	NaN	49.833	218	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20063			17466	4053	10062	10340				436			0.03356445274209818
MPSLLMMVN	9	Unmodified	_MPSLLMMVN_					0	0	0		ZNF683|p.A504Qfs*4|1|0.33|ENSG00000176083|chr1:26361720-26361720|C/-|frameshift_variant;ENSG00000176083|ENST00000349618|ZNF683;nc|ENSG00000176083|Q8IZ20|ZNF683	ZNF683|p.A504Qfs*4|1|0.33|ENSG00000176083|chr1:26361720-26361720|C/-|frameshift_variant	ZNF683|p.A504Qfs*4|1|0.33|ENSG00000176083|chr1:26361720-26361720|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2554165121002	2	518.255417	1034.49628	1.4314	0.00074183	-9.7663	-0.0050614	-8.3349	-0.0043196	518.2506716885982	22.886	0.24102	22.872	22.776	23.017	-0.01354	1233	121	0.87812483	0.073723376	0.8766054	356.40808	0	29.922394						359	11	4	NaN	NaN	NaN	0.18779	1	9753	9753		26.115	6.9514	1	52524			17467	5008	10063	10341	13856	13856					-0.019588197841585497
MPSLPEMMF	9	Unmodified	_MPSLPEMMF_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.4719220782001	1	1082.47192	1081.46465	0.93969	0.0010172	0.36376	0.00039376	1.3035	0.001411	1082.472621311171	34.01	0.12073	34.01	33.986	34.107	0	165	100	1.5210435	0.058431387	1.5210435	308.5035	0	11.851288						408	6	4	NaN	NaN	NaN	0.016254	1	12037	12037		76.739	53.653	1	51118			17468	3400	10064	10342	13857	13857					-0.07282812538119288
MPSLPEMMF	9	Unmodified	_MPSLPEMMF_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.4719220782001	1	1082.47192	1081.46465	1.193	0.0012913	-0.20826	-0.00022543	0.98471	0.0010659	1082.47245286646	34.009	0.19315	34.008	33.984	34.177	-0.0012474	162	106	1.5228153	0.06196618	1.5212959	308.86288	0	12.568207						438	9	4	NaN	NaN	NaN	0.0040938	1	11716	11716		104.71	73.035	1	51685			17469	3400	10064	10342	13858	13858					-0.07282812538119288
MPSLPEMMF	9	Oxidation (M)	_MPSLPEMM(Oxidation (M))F_		MPSLPEM(0.105)M(0.895)F		M(-70)PSLPEM(-9.3)M(9.3)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.4668367003	1	1098.46684	1097.45956	1.2452	0.0013678	-2.4245	-0.0026632	-1.1793	-0.0012955	1098.4674892850712	30.873	0.19304	30.873	30.825	31.018	0	150	85	1.5299006	0.049570203	1.5299006	310.24295	0	10.052185						364	9	4	NaN	NaN	NaN	0.021105	1	12717	12717		70.6	50.151	3	38339			17470	3400	10064	10343	13859	13859		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_MPSLPEMM(Oxidation (M))F_		MPSLPEM(0.057)M(0.943)F		M(-41)PSLPEM(-12)M(12)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7370565834501	2	549.737057	1097.45956	0.87524	0.00048115	-0.80822	-0.00044431	0.067024	3.6845E-05	549.7368293572008	30.873	0.24131	30.873	30.753	30.994	0	1260	76	0.8615505	0.046069622	0.8615505	349.4174	0	18.684326						441	11	5	NaN	NaN	NaN	0.062072	1	12718	12718		41.785	21.336	3	60449			17471	3400	10064	10343	13860	13860		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_MPSLPEM(Oxidation (M))MF_		M(0.002)PSLPEM(0.986)M(0.011)F		M(-27)PSLPEM(19)M(-19)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7370565834501	2	549.737057	1097.45956	1.6981	0.0009335	-0.82789	-0.00045512	0.8702	0.00047838	549.7370792092212	29.98	0.12067	29.98	29.932	30.053	0	1269	82	0.8560222	0.049739003	0.8560222	347.17526	0	20.172577						397	6	5	NaN	NaN	NaN	0.04947	1	12719	12719		47.136	22.574	3	67499			17472	3400	10064	10343	13861	13861		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_MPSLPEMM(Oxidation (M))F_		MPSLPEM(0.008)M(0.992)F		M(-52)PSLPEM(-21)M(21)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7370565834501	2	549.737057	1097.45956	1.1872	0.00065265	-0.88674	-0.00048748	0.30045	0.00016517	549.737490082787	30.872	0.24133	30.866	30.722	30.963	-0.0057545	1257	91	0.86339295	0.055262625	0.8618735	350.16458	0	22.41275						420	11	4	NaN	NaN	NaN	0.03623	1	12386	12386		52.758	28.196	3	64809			17473	3400	10064	10343	13862	13862		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_MPSLPEMM(Oxidation (M))F_		MPSLPEM(0.016)M(0.984)F		M(-66)PSLPEM(-18)M(18)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.4668367003	1	1098.46684	1097.45956	1.6131	0.001772	-0.75563	-0.00083003	0.8575	0.00094193	1098.4675551819778	30.872	0.16897	30.866	30.818	30.987	-0.0057545	147	88	1.5316714	0.05134332	1.530152	310.60202	0	10.411713						229	8	2	NaN	NaN	NaN	0.021105	1	12387	12387		70.6	44.485	3	28767			17474	3400	10064	10343	13863	13863		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_MPSLPEM(Oxidation (M))MF_		M(0.001)PSLPEM(0.988)M(0.011)F		M(-31)PSLPEM(19)M(-19)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7370565834501	2	549.737057	1097.45956	1.1227	0.00061721	0.4745	0.00026085	1.5972	0.00087806	549.7378124684494	29.979	0.16891	29.973	29.925	30.094	-0.0064087	1266	82	0.85786515	0.049739003	0.8563457	347.9227	0	20.172546						340	8	4	NaN	NaN	NaN	0.04947	1	12388	12388		47.136	16.526	3	73458			17475	3400	10064	10343	13864	13864		377;378;379			-0.08527116400728119
MPSLPEMMF	9	Oxidation (M)	_M(Oxidation (M))PSLPEMMF_		M(1)PSLPEMMF		M(87)PSLPEM(-87)M(-90)F	0	0	1		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.4668367003	1	1098.46684	1097.45956	1.2264	0.0013472	0.99298	0.0010908	2.2194	0.0024379	1098.468430737384	31.476	0.096535	31.471	31.447	31.544	-0.0044155	117	64	1.5493695	0.03714025	1.54785	314.19095	0	7.531555						151	5	2	NaN	NaN	NaN	0.01047	1	12389	12389		91.429	58.003	3	16625			17476	3400	10064	10343	13865	13865		377;378;379			-0.08527116400728119
MPSLPEMMF	9	2 Oxidation (M)	_MPSLPEM(Oxidation (M))M(Oxidation (M))F_		MPSLPEM(1)M(1)F		M(-52)PSLPEM(52)M(63)F	0	0	2		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7345138945002	2	557.734514	1113.45447	2.0399	0.0011377	-1.6504	-0.00092047	0.38952	0.00021725	557.7351705689641	25.781	0.1689	25.781	25.708	25.877	0	1263	106	0.85970795	0.064469576	0.85970795	348.60797	0	26.14212						556	8	5	NaN	NaN	NaN	0.023074	1	13398	13398		68.108	37.498	3	74010			17477	3400	10064	10344	13866	13866		377;378;379			-0.0977142026333695
MPSLPEMMF	9	2 Oxidation (M)	_MPSLPEM(Oxidation (M))M(Oxidation (M))F_		MPSLPEM(1)M(1)F		M(-59)PSLPEM(59)M(61)F	0	0	2		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.4617513224002	1	1114.46175	1113.45447	2.424	0.0027015	-0.84602	-0.00094286	1.578	0.0017586	1114.460528233162	25.781	0.19301	25.781	25.708	25.901	0	144	85	1.533442	0.049559712	1.533442	310.9056	0	10.048248						364	9	3	NaN	NaN	NaN	0.028349	1	13400	13400		61.271	46.096	3	34825			17478	3400	10064	10344	13867	13867		377;378;379			-0.0977142026333695
MPSLPEMMF	9	2 Oxidation (M)	_MPSLPEM(Oxidation (M))M(Oxidation (M))F_		MPSLPEM(1)M(1)F		M(-46)PSLPEM(46)M(46)F	0	0	2		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.4617513224002	1	1114.46175	1113.45447	1.9537	0.0021773	0.087842	9.7897E-05	2.0415	0.0022752	1114.4614110210516	25.78	0.16894	25.769	25.696	25.865	-0.0116	144	73	1.533442	0.042493343	1.5319226	310.9056	0	8.61554						290	8	3	NaN	NaN	NaN	0.04947	1	13022	13022		47.136	35.087	3	27435			17479	3400	10064	10344	13868	13868		377;378;379			-0.0977142026333695
MPSLPEMMF	9	2 Oxidation (M)	_MPSLPEM(Oxidation (M))M(Oxidation (M))F_		MPSLPEM(1)M(1)F		M(-64)PSLPEM(64)M(72)F	0	0	2		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7345138945002	2	557.734514	1113.45447	2.0894	0.0011653	0.6864	0.00038283	2.7758	0.0015481	557.736329713444	25.78	0.24133	25.769	25.672	25.914	-0.0116	1269	106	0.8560222	0.064469576	0.85450274	347.1134	0	26.14212						579	11	4	NaN	NaN	NaN	0.014046	1	13023	13023		80.639	51.04	3	69182			17480	3400	10064	10344	13869	13869		377;378;379			-0.0977142026333695
MPSPMPEYL	9	Oxidation (M)	_MPSPM(Oxidation (M))PEYL_		MPSPM(1)PEYL		M(-35)PSPM(35)PEYL	0	0	1		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;ENSG00000120798|ENST00000333003|NR2C1;nc|ENSG00000177463|P49116-2|NR2C2;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4740305681999	1	1080.47403	1079.46675	1.2821	0.0013853	1.0467	0.0011309	2.3288	0.0025162	1080.47531034653	23.995	0.19293	23.995	23.875	24.068	0	132	58	1.5405227	0.03363514	1.5405227	312.46164	0	6.822174						131	9	2	NaN	NaN	NaN	0.030669	1	11936	11936		58.235	41.377	2	12718			17481	2273	10065	10345	13870	13870		262			-0.06980060528690046
MPSPVSPKL	9	Oxidation (M)	_M(Oxidation (M))PSPVSPKL_		M(1)PSPVSPKL		M(50)PSPVSPKL	0	0	1		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.2651530689501	2	486.265153	970.515753	1.9739	0.00095983	-2.4914	-0.0012115	-0.51754	-0.00025166	486.2648059721366	17.237	0.19183	17.237	17.141	17.333	0	1329	67	0.81912065	0.04065323	0.81912065	332.74744	0	16.514343						199	9	3	NaN	NaN	NaN	0.041983	1	7624	7624		50.315	22.526	1	20559			17482	793	10066	10346	13871	13871		82			0.029315958226106886
MPSPVSPKL	9	Unmodified	_MPSPVSPKL_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.26769575790007	2	478.267696	954.520839	1.47	0.00070305	-0.67132	-0.00032107	0.79866	0.00038197	478.26777871355205	19.803	0.16846	19.789	19.693	19.861	-0.014141	1329	79	0.81912065	0.048013568	0.8176012	332.82532	0	19.50885						285	8	4	NaN	NaN	NaN	0.090258	1	7053	7053		37.231	21.768	1	44179			17483	793	10066	10347	13872	13872					0.041758996852195196
MPSPYYMEL	9	Unmodified	_MPSPYYMEL_					0	0	0		ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.4896806324	1	1130.48968	1129.4824	2.0186	0.002282	-0.1249	-0.0001412	1.8937	0.0021408	1130.4889858017468	28.943	0.12073	28.943	28.918	29.039	0	66	55	1.579413	0.031785727	1.579413	320.17056	0	6.443451						137	6	3	NaN	NaN	NaN	0.18779	1	14049	14049		26.115	4.28	1	8749.7			17484	2694	10067	10348	13873	13873					-0.07715774011626308
MPSPYYMEL	9	Unmodified	_MPSPYYMEL_					0	0	0		ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1130.4896806324	1	1130.48968	1129.4824	0.99848	0.0011288	3.3346	0.0037698	4.3331	0.0048985	1130.4947309964032	28.942	0.12069	28.933	28.885	29.006	-0.0083485	69	55	1.5776473	0.031785727	1.5761279	319.8126	0	6.4434204						136	6	3	NaN	NaN	NaN	0.21199	1	13608	13608		24.562	10.137	1	9039.3			17485	2694	10067	10348	13874	13874					-0.07715774011626308
MPSQDYVL	8	Unmodified	_MPSQDYVL_					0	0	0		ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4444449993001	1	952.444445	951.437169	1.6758	0.0015961	1.0802	0.0010288	2.756	0.0026249	952.4448839785962	23.875	0.12041	23.875	23.803	23.923	0	276	115	1.4553556	0.06765342	1.4553556	295.6883	0	13.745331						260	6	3	NaN	NaN	NaN	0.3042	1	7116	7116		41.785	18.45	1	27008			17486	2894	10068	10349	13875	13875					-0.040492564824944566
MPSQDYVL	8	Unmodified	_MPSQDYVL_					0	0	0		ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4444449993001	1	952.444445	951.437169	1.6693	0.0015899	-0.54758	-0.00052154	1.1217	0.0010684	952.443087495531	23.875	0.16876	23.861	23.813	23.982	-0.013048	273	115	1.4571344	0.06766057	1.4556149	296.04968	0	13.746796						218	8	2	NaN	NaN	NaN	0.16655	1	6979	6979		52.624	27.663	1	24997			17487	2894	10068	10349	13876	13876					-0.040492564824944566
MPSQDYVL	8	Oxidation (M)	_M(Oxidation (M))PSQDYVL_		M(1)PSQDYVL		M(47)PSQDYVL	0	0	1		ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4393596214002	1	968.43936	967.432083	1.9175	0.001857	0.76984	0.00074554	2.6873	0.0026025	968.4399361668634	21.85	0.096275	21.85	21.778	21.874	0	273	52	1.4571344	0.030241847	1.4571344	295.97983	0	6.1428833						110	5	2	NaN	NaN	NaN	0.23186	1	7534	7534		47.482	20.75	1	9879.3			17488	2894	10068	10350	13877	13877		334			-0.052935603451032875
MPSQFRDIL	9	Unmodified	_MPSQFRDIL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7867839680501	2	553.786784	1105.55902	0.99372	0.00055031	1.6414	0.00090901	2.6352	0.0014593	553.7868338302817	24.406	0.16888	24.406	24.309	24.478	0	1242	79	0.87260187	0.047852874	0.87260187	353.86728	0	19.405823						354	8	5	NaN	NaN	NaN	0.21451	1	13084	13084		24.4	5.2367	1	51202			17489	1240	10069	10351	13878	13878					0.010457855998993182
MPSRPELSA	9	Unmodified	_MPSRPELSA_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.25003432100004	2	494.250034	986.485516	1.9823	0.00097976	-5.1549	-0.0025478	-3.1726	-0.0015681	494.2489364916285	16.614	0.19191	16.614	16.542	16.734	0	1347	82	0.8080346	0.049879134	0.8080346	328.1698	0	20.257568						479	9	4	NaN	NaN	NaN	0.052553	1	8096	8096		45.827	23.7	1	79924			17490	2052	10070	10352	13879	13879					-0.008267628425869589
MPSRPELSA	9	Unmodified	_MPSRPELSA_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.25003432100004	2	494.250034	986.485516	1.471	0.00072703	-3.6568	-0.0018074	-2.1858	-0.0010803	494.24956565014554	16.634	0.28766	16.621	16.501	16.789	-0.013294	1344	85	0.8098828	0.05172372	0.8083634	328.92038	0	21.006714						565	13	4	NaN	NaN	NaN	0.077759	1	7927	7927		39.039	14.078	1	93102			17491	2052	10070	10352	13880	13880					-0.008267628425869589
MPSSDTTVTF	10	Unmodified	_MPSSDTTVTF_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.4819527175998	1	1085.48195	1084.47468	2.1677	0.002353	-1.0063	-0.0010923	1.1614	0.0012607	1085.481191513719	23.176	0.24108	23.176	23.079	23.32	0	165	61	1.5210435	0.03543353	1.5210435	308.49274	0	7.186493						376	11	4	NaN	NaN	NaN	0.040041	1	12150	12150		55.413	20.117	1	38425			17492	1116	10071	10353	13881	13881					-0.06418210007564085
MPSSDTTVTF	10	Unmodified	_MPSSDTTVTF_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.4819527175998	1	1085.48195	1084.47468	1.6731	0.0018162	-0.073452	-7.973E-05	1.5997	0.0017364	1085.4823353889565	23.175	0.24129	23.162	23.114	23.355	-0.013294	162	70	1.5228153	0.040755033	1.5212959	308.85208	0	8.265808						356	11	3	NaN	NaN	NaN	0.088985	1	11834	11834		47.482	15.806	1	36983			17493	1116	10071	10353	13882	13882					-0.06418210007564085
MPSSDTTVTF	10	Oxidation (M)	_M(Oxidation (M))PSSDTTVTF_		M(1)PSSDTTVTF		M(73)PSSDTTVTF	0	0	1		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.4768673396998	1	1101.47687	1100.46959	1.4437	0.0015902	0.60834	0.00067008	2.052	0.0022603	1101.477311086636	21.2	0.16863	21.2	21.127	21.296	0	177	64	1.5139546	0.037238836	1.5139546	306.99887	0	7.5512695						203	8	2	NaN	NaN	NaN	0.0085408	1	12846	12846		73.133	52.684	1	15329			17494	1116	10071	10354	13883	13883		121			-0.07662513870172916
MPSSDTTVTF	10	Oxidation (M)	_M(Oxidation (M))PSSDTTVTF_		M(1)PSSDTTVTF		M(55)PSSDTTVTF	0	0	1		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.4768673396998	1	1101.47687	1100.46959	1.6081	0.0017712	-0.32768	-0.00036093	1.2804	0.0014103	1101.4752384793837	21.224	0.16854	21.21	21.114	21.282	-0.014004	195	76	1.5033154	0.04432726	1.501796	304.8415	0	8.988678						207	8	2	NaN	NaN	NaN	0.040041	1	12513	12513		55.413	36.249	1	15715			17495	1116	10071	10354	13884	13884		121			-0.07662513870172916
MPSSEDLLL	9	Unmodified	_MPSSEDLLL_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4968745003001	1	1004.49687	1003.4896	1.79	0.001798	1.466	0.0014726	3.256	0.0032706	1004.4983544149472	28.508	0.16897	28.508	28.436	28.605	0	213	67	1.4926696	0.03905976	1.4926696	303.0449	0	7.9299927						233	8	3	NaN	NaN	NaN	0.030391	1	8722	8722		58.599	22.563	1	22206			17496	8012	10072	10355	13885	13885					-0.012007181395460975
MPSSEDLLL	9	Unmodified	_MPSSEDLLL_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4968745003001	1	1004.49687	1003.4896	1.3134	0.0013193	3.0223	0.0030359	4.3358	0.0043553	1004.5002885663789	28.507	0.193	28.499	28.475	28.668	-0.0083485	210	58	1.4944444	0.033728123	1.4929249	303.4052	0	6.847534						224	9	3	NaN	NaN	NaN	0.056143	1	8549	8549		44.302	14.704	1	21032			17497	8012	10072	10355	13886	13886					-0.012007181395460975
MPSSFFLLL	9	Unmodified	_MPSSFFLLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5641662045002	1	1054.56417	1053.55689	1.8903	0.0019934	-1.1794	-0.0012437	0.71095	0.00074974	1054.564211457807	41.45	0.072227	41.45	41.377	41.45	0	117	31	1.5493695	0.017686725	1.5493695	314.35355	0	3.588501						38	4	2	NaN	NaN	NaN	0.12945	1	10805	10805		31.561	9.4347	1	1816.4			17498	3400	10073	10356	13887	13887					0.03225356862094486
MPSSFFLLL	9	Unmodified	_MPSSFFLLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5641662045002	1	1054.56417	1053.55689	1.6152	0.0017033	-0.70235	-0.00074067	0.91282	0.00096263	1054.564124302107	40.056	0.38483	40.056	39.959	40.344	0	114	109	1.5511382	0.06364548	1.5511382	314.7124	0	12.913116						852	17	5	NaN	NaN	NaN	0.056143	1	10806	10806		44.302	5.3845	1	173760			17499	3400	10073	10356	13888	13888					0.03225356862094486
MPSSFFLLL	9	Unmodified	_MPSSFFLLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5641662045002	1	1054.56417	1053.55689	1.6392	0.0017287	-0.76144	-0.00080299	0.8778	0.00092569	1054.5638139645455	40.03	0.3368	40.036	39.939	40.276	0.0060501	108	109	1.5546752	0.06364548	1.5531558	315.43005	0	12.913086						846	15	4	NaN	NaN	NaN	0.02781	1	10581	10581		61.977	20.192	1	180890			17500	3400	10073	10356	13889	13889					0.03225356862094486
MPSSFFLLL	9	Oxidation (M)	_M(Oxidation (M))PSSFFLLL_		M(1)PSSFFLLL		M(85)PSSFFLLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5590808266002	1	1070.55908	1069.5518	1.2571	0.0013458	0.63492	0.00067971	1.892	0.0020255	1070.5596318355522	37.65	0.16852	37.65	37.578	37.747	0	69	136	1.5776473	0.079561114	1.5776473	320.029	0	16.13913						766	8	4	NaN	NaN	NaN	0.012648	1	11549	11549		84.879	48.842	1	86690			17501	3400	10073	10357	13890	13890		380			0.019810529994629178
MPSSFFLLL	9	Oxidation (M)	_M(Oxidation (M))PSSFFLLL_		M(1)PSSFFLLL		M(53)PSSFFLLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5590808266002	1	1070.55908	1069.5518	1.2063	0.0012914	0.39026	0.00041779	1.5965	0.0017092	1070.5599298543182	37.648	0.1684	37.651	37.579	37.747	0.0028229	69	139	1.5776473	0.08134198	1.5761279	320.029	0	16.500397						751	8	3	NaN	NaN	NaN	0.03623	1	11260	11260		52.758	19.06	1	88324			17502	3400	10073	10357	13891	13891		380			0.019810529994629178
MPSTRDYEI	9	Unmodified	_MPSTRDYEI_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.25805631835	2	556.258056	1110.50156	1.7847	0.00099276	-1.3718	-0.00076309	0.41288	0.00022967	556.2572551235298	18.844	0.16803	18.844	18.772	18.94	0	1272	82	0.854179	0.049744427	0.854179	346.37726	0	20.171814						289	8	3	NaN	NaN	NaN	0.27507	1	13289	13289		20.513	2.5436	1	32119			17503	7981	10074	10358	13892	13892					-0.0492710139637893
MPSTRDYEI	9	Unmodified	_MPSTRDYEI_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.25805631835	2	556.258056	1110.50156	1.5921	0.00088563	-1.7478	-0.00097221	-0.15565	-8.6581E-05	556.2571479635058	18.866	0.12016	18.852	18.804	18.924	-0.014059	1275	82	0.85233563	0.049744427	0.8508162	345.62976	0	20.171814						257	6	3	NaN	NaN	NaN	0.33202	1	12909	12909		16.858	1.3956	1	29383			17504	7981	10074	10358	13893	13893					-0.0492710139637893
MPSVFQNVL	9	Unmodified	_MPSVFQNVL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7706025876001	2	517.770603	1033.52665	1.3052	0.00067578	-3.2941	-0.0017056	-1.9889	-0.0010298	517.7690315886251	30.753	0.19307	30.753	30.68	30.873	0	1290	61	0.84311575	0.036889493	0.84311575	342.20297	0	14.972687						285	9	3	NaN	NaN	NaN	0.055351	1	9927	9927		44.638	21.304	1	41653			17505	4817	10075	10359	13894	13894					0.011229981968881475
MPSVFQNVL	9	Unmodified	_MPSVFQNVL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5339287086001	1	1034.53393	1033.52665	1.2746	0.0013187	0.21168	0.00021899	1.4863	0.0015377	1034.5340600954792	30.753	0.16895	30.753	30.68	30.849	0	180	103	1.5121819	0.060249925	1.5121819	306.88538	0	12.227234						288	8	2	NaN	NaN	NaN	0.024221	1	9928	9928		66.656	34.204	1	63843			17506	4817	10075	10359	13895	13895					0.011229981968881475
MPSVFQNVL	9	Unmodified	_MPSVFQNVL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7706025876001	2	517.770603	1033.52665	1.0601	0.00054889	-1.649	-0.00085383	-0.58894	-0.00030494	517.7694688058973	30.752	0.21714	30.746	30.649	30.866	-0.0057545	1287	49	0.8449601	0.029508412	0.84344065	342.95157	0	11.976868						353	10	4	NaN	NaN	NaN	0.055351	1	9718	9718		44.638	25.52	1	51944			17507	4817	10075	10359	13896	13896					0.011229981968881475
MPSVFQNVL	9	Unmodified	_MPSVFQNVL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5339287086001	1	1034.53393	1033.52665	1.1183	0.0011569	-0.99004	-0.0010242	0.12829	0.00013272	1034.5340508619622	30.752	0.193	30.746	30.673	30.866	-0.0057545	177	85	1.5139546	0.049633265	1.5124352	307.24512	0	10.072693						276	9	2	NaN	NaN	NaN	0.042816	1	9719	9719		49.961	23.23	1	56432			17508	4817	10075	10359	13897	13897					0.011229981968881475
MPSVPDFETL	10	Unmodified	_MPSVPDFETL_					0	0	0		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1135.5339882881	1	1135.53399	1134.52671	2.8501	0.0032364	-1.6576	-0.0018822	1.1926	0.0013542	1135.5331166896813	30.198	0.31372	30.198	30.101	30.415	0	84	118	1.5688156	0.06894565	1.5688156	318.00522	0	13.975555						784	14	5	NaN	NaN	NaN	3.5243E-06	1	14249	14249		125.02	84.866	1	261300			17509	3302	10076	10360	13898	13898					-0.03517046593765372
MPSVPDFETL	10	Unmodified	_MPSVPDFETL_					0	0	0		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2706323773501	2	568.270632	1134.52671	0.9087	0.00051639	-0.81859	-0.00046518	0.090119	5.1212E-05	568.2693810724797	30.172	0.2413	30.166	30.094	30.335	-0.0064106	1215	79	0.8891654	0.04784769	0.88764596	360.47095	0	19.397644						379	11	3	NaN	NaN	NaN	0.2358	1	13792	13792		32.453	7.8907	1	57804			17510	3302	10076	10360	13899	13899					-0.03517046593765372
MPSVPDFETL	10	Unmodified	_MPSVPDFETL_					0	0	0		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1135.5339882881	1	1135.53399	1134.52671	1.3978	0.0015872	-0.93717	-0.0010642	0.46063	0.00052306	1135.5335980416899	30.172	0.3137	30.166	30.045	30.359	-0.0064106	81	121	1.5705823	0.070709705	1.5690628	318.36334	0	14.33316						752	14	5	NaN	NaN	NaN	1.7419E-08	1	13793	13793		131.88	88.882	1	246980			17511	3302	10076	10360	13900	13900					-0.03517046593765372
MPSVPDFETL	10	Oxidation (M)	_M(Oxidation (M))PSVPDFETL_		M(1)PSVPDFETL		M(92)PSVPDFETL	0	0	1		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1151.5289029102	1	1151.5289	1150.52163	2.9319	0.0033761	-1.0493	-0.0012083	1.8826	0.0021679	1151.528009184628	27.833	0.28955	27.833	27.664	27.953	0	78	103	1.5723488	0.06009054	1.5723488	318.66812	0	12.178558						677	13	3	NaN	NaN	NaN	0.000399	1	14823	14823		91.563	56.267	1	97242			17512	3302	10076	10361	13901	13901		365			-0.0476135045639694
MPSVPDFETL	10	Oxidation (M)	_M(Oxidation (M))PSVPDFETL_		M(1)PSVPDFETL		M(100)PSVPDFETL	0	0	1		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1151.5289029102	1	1151.5289	1150.52163	1.8733	0.0021572	-1.236	-0.0014233	0.63731	0.00073388	1151.5279670213351	27.759	0.096502	27.75	27.677	27.774	-0.009552	90	94	1.5652816	0.05478549	1.5637622	317.2358	0	11.103394						277	5	3	NaN	NaN	NaN	0.00021511	1	14316	14316		102.05	66.75	1	33625			17513	3302	10076	10361	13902	13902		365			-0.0476135045639694
MPSVPDFETL	10	Oxidation (M)						0	0	1		ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	ENST00000486810.5_1_17:17171351-17179368:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1151.5289	1150.52163	1.9572	0.0022538	-0.94207	-0.0010848	1.0151	0.001169	1151.5283103674378	27.856	0.16896	27.846	27.798	27.967	-0.009552	108	103	1.5546752	0.06009686	1.5531558	315.0862		12.17984	0.006897	7.1732E-05	-0.0095966	NaN	91.563	489	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68121			17514	3302	10076	10361				365			-0.0476135045639694
MPSYDLVL	8	Unmodified	_MPSYDLVL_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.4699314682999	1	937.469931	936.462655	1.7228	0.001615	-0.36423	-0.00034145	1.3585	0.0012736	937.4692552488373	29.787	0.19305	29.787	29.739	29.932	0	285	118	1.4500183	0.069444776	1.4500183	294.6711	0	14.112488						406	9	2	NaN	NaN	NaN	0.09307	1	6752	6752		65.672	29.636	1	62848			17515	5465	10077	10362	13903	13903					-0.008117819600897747
MPSYDLVL	8	Unmodified	_MPSYDLVL_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	937.4699314682999	1	937.469931	936.462655	1.6098	0.0015091	-0.67845	-0.00063603	0.9313	0.00087307	937.4689264792689	29.786	0.26541	29.779	29.707	29.972	-0.0070648	288	136	1.4482387	0.080120206	1.4467193	294.30948	0	16.281952						458	12	2	NaN	NaN	NaN	0.12449	1	6611	6611		59.445	23.409	1	69544			17516	5465	10077	10362	13904	13904					-0.008117819600897747
MPSYDLVL	8	Oxidation (M)	_M(Oxidation (M))PSYDLVL_		M(1)PSYDLVL		M(41)PSYDLVL	0	0	1		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4648460904	1	953.464846	952.45757	1.1843	0.0011292	0.76604	0.00073039	1.9503	0.0018596	953.4647637079784	27.759	0.16889	27.75	27.653	27.822	-0.009552	330	106	1.4233059	0.062309027	1.4217864	289.17224	0	12.659302						293	8	2	NaN	NaN	NaN	0.30832	1	7006	7006		41.46	19.334	1	26515			17517	5465	10077	10363	13905	13905		568			-0.020560858226986056
MPSYDLVL	8	Oxidation (M)						0	0	1		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	953.464846	952.45757	1.5849	0.0015112	2.6844	0.0025595	4.2693	0.0040707	953.4661221358716	27.688	0.048239	27.688	27.664	27.712	0	270	49	1.458913	0.028455377	1.458913	296.4065		5.78125	-0.03102	0.0013873	0.018563	NaN	41.46	73	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5441.2			17518	5465	10077	10363				568			-0.020560858226986056
MPTDSQDSL	9	Unmodified	_MPTDSQDSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4193524608	1	993.419352	992.412076	2.5778	0.0025608	0.27537	0.00027356	2.8532	0.0028344	993.4190427567768	18.316	0.19189	18.316	18.245	18.436	0	297	46	1.4428991	0.026706696	1.4428991	292.98468	0	5.422882						174	9	2	NaN	NaN	NaN	0.0080618	1	8295	8295		96.341	51.703	1	14316			17519	3881	10078	10364	13906	13906					-0.08443356075736119
MPTDSQDSL	9	Unmodified	_MPTDSQDSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4193524608	1	993.419352	992.412076	2.3264	0.0023111	0.47139	0.00046828	2.7978	0.0027794	993.4189643508755	18.29	0.21606	18.276	18.228	18.444	-0.01395	297	46	1.4428991	0.026703835	1.4413797	292.98468	0	5.4222717						159	10	2	NaN	NaN	NaN	0.064504	1	8129	8129		40.957	20.444	1	14442			17520	3881	10078	10364	13907	13907					-0.08443356075736119
MPTDVVDLL	9	Unmodified	_MPTDVVDLL_					0	0	0		ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7	ENSG00000091157|ENST00000254442|WDR7	ENSG00000091157|ENST00000254442|WDR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5176099424001	1	1002.51761	1001.51033	1.4301	0.0014337	-2.6937	-0.0027005	-1.2636	-0.0012668	1002.5172982897127	32.273	0.096478	32.273	32.201	32.297	0	207	55	1.496219	0.031941056	1.496219	303.77365	0	6.4849243						83	5	2	NaN	NaN	NaN	0.49672	1	8652	8652		9.746	0.62279	1	7524.6			17521	1076	10079	10365	13908	13908					0.009638722401177802
MPTHDPFAGL	10	Unmodified	_MPTHDPFAGL_					0	0	0			REV__ENST00000397901.7_1_16:89711510-89711999:-|nuORF	REV__ENST00000397901.7_1_16:89711510-89711999:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2578593531001	2	543.257859	1084.50117	1.1517	0.00062568	-2.0345	-0.0011052	-0.88275	-0.00047956	543.2562834148881	21.103	0.1686	21.089	21.041	21.21	-0.014004	1287	58	0.8449601	0.035031855	0.84344065	342.73962	0	14.2099						191	8	4	NaN	NaN	NaN	0.62764	1	11839	11839		13.003	1.8325	1	25499	+		17522	12020	10080	10366	13909	13909					-0.03770476325553318
MPTIPALAL	9	Unmodified	_MPTIPALAL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.5379514539999	1	926.537951	925.530675	1.4912	0.0013817	-1.0843	-0.0010046	0.40689	0.000377	926.5362497028735	32.804	0.072376	32.804	32.804	32.876	0	282	46	1.4517976	0.026689649	1.4517976	295.08322	0	5.424774						77	4	2	NaN	NaN	NaN	0.094712	1	6509	6509		36.586	17.302	1	5374.9			17523	2879;7410	10081	10367	13910	13910					0.06493087690569155
MPTIPALAL	9	Unmodified	_MPTIPALAL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.5379514539999	1	926.537951	925.530675	1.1115	0.0010299	0.32717	0.00030314	1.4387	0.001333	926.5404262049512	32.827	0.072384	32.824	32.776	32.848	-0.0031052	279	49	1.4535767	0.028464437	1.4520572	295.44482	0	5.785492						73	4	2	NaN	NaN	NaN	0.20577	1	6382	6382		24.961	14.356	1	4387.7			17524	2879;7410	10081	10367	13911	13911					0.06493087690569155
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.28080313314996	2	494.280803	986.547053	2.0514	0.001014	-3.8143	-0.0018853	-1.7628	-0.00087133	494.27883621200846	30.149	0.16893	30.149	30.101	30.27	0	1335	73	0.8154261	0.044315398	0.8154261	331.17142	0	17.997925						361	8	4	NaN	NaN	NaN	0.042816	1	8109	8109		49.961	17.509	1	93971			17525	2208	10082	10368	13912	13912					0.05324168856668621
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5543297997	1	987.55433	986.547053	2.4415	0.0024111	-2.7215	-0.0026876	-0.27996	-0.00027648	987.5521989789997	30.149	0.14479	30.149	30.101	30.246	0	219	109	1.4891195	0.06390917	1.4891195	302.3945	0	12.977997						402	7	5	NaN	NaN	NaN	0.028569	1	8110	8110		60.984	23.681	1	102960			17526	2208	10082	10368	13913	13913					0.05324168856668621
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.28080313314996	2	494.280803	986.547053	0.75485	0.00037311	-3.3423	-0.001652	-2.5874	-0.0012789	494.2793733467838	30.148	0.16894	30.142	30.094	30.263	-0.0064106	1332	76	0.8172735	0.046164393	0.81575406	331.9217	0	18.74887						368	8	5	NaN	NaN	NaN	0.021751	1	7943	7943		69.782	25.48	1	95008			17527	2208	10082	10368	13914	13914					0.05324168856668621
MPTIQITAL	9	Unmodified	_MPTIQITAL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5543297997	1	987.55433	986.547053	1.4557	0.0014376	-1.4198	-0.0014021	0.035968	3.5521E-05	987.553354007614	30.148	0.12068	30.142	30.094	30.214	-0.0064106	219	130	1.4891195	0.07635629	1.4876001	302.3945	0	15.505615						382	6	5	NaN	NaN	NaN	0.006197	1	7944	7944		100.15	59.189	1	92707			17528	2208	10082	10368	13915	13915					0.05324168856668621
MPTIQITAL	9	Unmodified						0	0	0		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.280803	986.547053	2.6445	0.0013071	-8.7293	-0.0043147	-6.0848	-0.0030076	494.2775343513857	30.51	0.048269	30.505	30.48	30.529	-0.0057545	1329	19	0.81912065	0.011083603	0.8176012	332.67194		4.5014343	0.17762	-0.0043466	0.0010876	NaN	49.961	23	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134.1			17529	2208	10082	10368							0.05324168856668621
MPTIQITAL	9	Oxidation (M)	_M(Oxidation (M))PTIQITAL_		M(1)PTIQITAL		M(45)PTIQITAL	0	0	1		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.5492444218	1	1003.54924	1002.54197	1.5917	0.0015974	-1.0831	-0.001087	0.50856	0.00051036	1003.5474731080219	27.398	0.12072	27.398	27.35	27.471	0	213	67	1.4926696	0.039039016	1.4926696	303.04877	0	7.925873						214	6	3	NaN	NaN	NaN	0.054111	1	8706	8706		45.165	16.269	1	25724			17530	2208	10082	10369	13916	13916		256			0.0407986499405979
MPTIQITAL	9	Oxidation (M)	_M(Oxidation (M))PTIQITAL_		M(1)PTIQITAL		M(67)PTIQITAL	0	0	1		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2782604442	2	502.27826	1002.54197	0.94714	0.00047573	-1.926	-0.00096737	-0.97882	-0.00049164	502.2772561516272	27.277	0.096527	27.267	27.218	27.315	-0.010126	1323	61	0.8228144	0.0369215	0.82129496	334.09872	0	14.99173						172	5	3	NaN	NaN	NaN	0.023828	1	8529	8529		67.154	33.456	1	27220			17531	2208	10082	10369	13917	13917		256			0.0407986499405979
MPTIQITAL	9	Oxidation (M)						0	0	1		ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1003.54924	1002.54197	1.2806	0.0012851	-1.6105	-0.0016162	-0.32995	-0.00033112	1003.548236824661	27.422	0.12068	27.411	27.363	27.484	-0.010126	213	61	1.4926696	0.03548634	1.4911501	303.04877		7.2045593	0.0066254	-0.00023212	-0.00075972	NaN	45.165	198	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22866			17532	2208	10082	10369				256			0.0407986499405979
MPTKETTKL	9	Unmodified	_MPTKETTKL_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.788992306	2	524.788992	1047.56343	0.83903	0.00044032	-1.5942	-0.00083661	-0.75514	-0.00039629	524.7885783847132	12.892	0.12011	12.892	12.868	12.988	0	1296	40	0.8394264	0.023979485	0.8394264	340.64554	0	9.731079						142	6	3	NaN	NaN	NaN	0.071077	1	10539	10539		40.006	15.444	1	19213			17533	3937	10083	10370	13918	13918					0.041552500227680866
MPTKETTKL	9	Unmodified	_MPTKETTKL_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.788992306	2	524.788992	1047.56343	0.98529	0.00051707	-0.37039	-0.00019438	0.6149	0.0003227	524.7891389695229	12.942	0.14379	12.933	12.885	13.028	-0.00947	1290	43	0.84311575	0.02582264	0.8415963	342.1427	0	10.479034						162	7	3	NaN	NaN	NaN	0.08308	1	10325	10325		38.269	20.036	1	20869			17534	3937	10083	10370	13919	13919					0.041552500227680866
MPTKTIEVL	9	Unmodified	_MPTKTIEVL_					0	0	0		ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2939105084001	2	516.293911	1030.57327	1.9177	0.00099007	-1.9964	-0.0010307	-0.078715	-4.064E-05	516.2930539104581	21.44	0.16875	21.44	21.392	21.561	0	1275	88	0.85233563	0.053434968	0.85233563	345.95816	0	21.688934						314	8	4	NaN	NaN	NaN	0.034172	1	9815	9815		53.652	22.091	1	72170			17535	4997	10084	10371	13920	13920					0.05920438028169883
MPTKTIEVL	9	Unmodified	_MPTKTIEVL_					0	0	0		ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	ENST00000544140.5_1_11:73555872-73571072:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2939105084001	2	516.293911	1030.57327	1.4474	0.0007473	-0.57812	-0.00029848	0.86931	0.00044882	516.2935695588154	21.464	0.24096	21.45	21.354	21.595	-0.014006	1275	58	0.85233563	0.035024226	0.8508162	345.95816	0	14.216156						283	11	3	NaN	NaN	NaN	0.028404	1	9608	9608		61.199	19.414	1	73854			17536	4997	10084	10371	13921	13921					0.05920438028169883
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5135871969999	1	1074.51359	1073.50631	1.659	0.0017827	-0.90222	-0.00096945	0.75681	0.00081321	1074.5130774905952	21.464	0.16875	21.464	21.416	21.585	0	141	70	1.5352125	0.040720582	1.5352125	311.4064	0	8.259857						267	8	4	NaN	NaN	NaN	0.0098181	1	11698	11698		92.758	50.44	1	43747			17537	1706	10085	10372	13922	13922					-0.027502172536060243
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7604318318	2	537.760432	1073.50631	1.95	0.0010486	2.2764	0.0012241	4.2263	0.0022727	537.763489974356	21.464	0.21696	21.464	21.416	21.633	0	1284	100	0.8468043	0.060811877	0.8468043	343.53177	0	24.670166						431	10	3	NaN	NaN	NaN	0.2345	1	11703	11703		23.118	2.6689	1	115120			17538	1706	10085	10372	13923	13923					-0.027502172536060243
MPTQEVQEL	9	Unmodified	_MPTQEVQEL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5135871969999	1	1074.51359	1073.50631	1.6544	0.0017777	0.47301	0.00050825	2.1274	0.0022859	1074.5140011749645	21.464	0.16871	21.45	21.402	21.571	-0.014006	141	73	1.5352125	0.042484283	1.5336931	311.4064	0	8.617615						281	8	4	NaN	NaN	NaN	0.022185	1	11399	11399		69.233	35.808	1	42452			17539	1706	10085	10372	13924	13924					-0.027502172536060243
MPTQEVQEL	9	Unmodified						0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.760432	1073.50631	1.5011	0.00080724	6.6143	0.0035569	8.1154	0.0043641	537.7644121327037	21.464	0.24081	21.45	21.33	21.571	-0.014006	1284	97	0.8468043	0.0589723	0.8452849	343.53174		23.92389	-0.0069912	0.0027079	-0.00075972	NaN	23.118	441	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141550			17540	1706	10085	10372							-0.027502172536060243
MPTQEVQEL	9	Oxidation (M)	_M(Oxidation (M))PTQEVQEL_		M(1)PTQEVQEL		M(69)PTQEVQEL	0	0	1		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5085018190998	1	1090.5085	1089.50123	2.3644	0.0025784	-0.25723	-0.00028051	2.1072	0.0022979	1090.5088053298073	18.964	0.14399	18.964	18.916	19.06	0	132	52	1.5405227	0.030088305	1.5405227	312.42532	0	6.102051						178	7	2	NaN	NaN	NaN	0.022185	1	12364	12364		69.233	40.337	1	19766			17541	1706	10085	10373	13925	13925		193			-0.03994521116214855
MPTQEVQEL	9	Oxidation (M)	_M(Oxidation (M))PTQEVQEL_		M(1)PTQEVQEL		M(99)PTQEVQEL	0	0	1		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5085018190998	1	1090.5085	1089.50123	1.3932	0.0015193	0.58799	0.0006412	1.9812	0.0021605	1090.5089038464848	18.986	0.16808	18.972	18.9	19.068	-0.014059	129	64	1.5422925	0.03717172	1.540773	312.7842	0	7.5386047						242	8	3	NaN	NaN	NaN	0.0068607	1	12059	12059		98.792	52.965	1	21491			17542	1706	10085	10373	13926	13926		193			-0.03994521116214855
MPTSTILRL	9	Unmodified	_MPTSTILRL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.29952720255	2	516.299527	1030.5845	1.5878	0.0008198	-5.5703	-0.0028759	-3.9824	-0.0020561	516.2968139812284	24.574	0.096422	24.574	24.502	24.598	0	1272	46	0.854179	0.027647734	0.854179	346.70636	0	11.222046						96	5	2	NaN	NaN	NaN	0.23499	1	9817	9817		23.086	8.2318	1	25938			17543	995	10086	10374	13927	13927					0.07043260122304673
MPTSTILRL	9	Unmodified	_MPTSTILRL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.29952720255	2	516.299527	1030.5845	1.1214	0.00057897	-9.8124	-0.0050661	-8.691	-0.0044872	516.294437525273	24.598	0.096516	24.586	24.538	24.634	-0.012394	1272	58	0.854179	0.03502804	0.8526596	346.70636	0	14.217682						129	5	4	NaN	NaN	NaN	0.059222	1	9609	9609		42.995	2.841	1	26800			17544	995	10086	10374	13928	13928					0.07043260122304673
MPVAEGKSV	9	Unmodified	_MPVAEGKSV_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.24167797265005	2	459.241678	916.468803	0.87062	0.00039983	-1.5486	-0.0007112	-0.67802	-0.00031138	459.2406426008418	14.429	0.095916	14.429	14.405	14.501	0	1374	46	0.791392	0.027755678	0.791392	321.7481	0	11.284332						117	5	3	NaN	NaN	NaN	0.13999	1	6352	6352		30.035	6.185	1	10775			17545	2430	10087	10375	13929	13929					0.0072273627146159924
MPVAEGKSV	9	Unmodified	_MPVAEGKSV_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20;ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.24167797265005	2	459.241678	916.468803	0.88717	0.00040743	-1.7852	-0.00081985	-0.89806	-0.00041243	459.2406594176767	14.428	0.095817	14.417	14.393	14.489	-0.011219	1371	52	0.79324204	0.03145641	0.7917226	322.5002	0	12.78891						100	5	2	NaN	NaN	NaN	0.14227	1	6223	6223		29.706	10.588	1	12302			17546	2430	10087	10375	13930	13930					0.0072273627146159924
MPVCHTGKRVI	11	Unmodified	_MPVCHTGKRVI_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.2266156469333	3	414.226616	1239.65802	2.2898	0.00094849	-2.8137	-0.0011655	-0.52387	-0.000217	414.2252571015912	13.589	0.2402	13.589	13.565	13.805	0	1416	76	0.76547134	0.046349823	0.76547134	465.00894	0	28.156616						371	11	4	NaN	NaN	NaN	0.1667	1	17529	17529		19.904	0	1	117300			17547	4258	10088	10376	13931	13931					0.0477748529310702
MPVCHTGKRVI	11	Unmodified	_MPVCHTGKRVI_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.8362852371	2	620.836285	1239.65802	0.8207	0.00050952	-0.56884	-0.00035316	0.25186	0.00015637	620.8358052170098	13.637	0.1918	13.627	13.579	13.771	-0.010098	1191	37	0.90387505	0.02205491	0.9023556	366.06094	0	8.932037						164	9	3	NaN	NaN	NaN	0.71564	1	16788	16788		6.4299	0	1	18127			17548	4258	10088	10376	13932	13932					0.0477748529310702
MPVDDVIGTL	10	Unmodified	_MPVDDVIGTL_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.5390736660001	1	1059.53907	1058.5318	2.2178	0.0023498	-0.33157	-0.00035131	1.8862	0.0019985	1059.538717942506	29.787	0.19305	29.787	29.739	29.932	0	171	130	1.5174994	0.076218605	1.5174994	307.8687	0	15.463165						365	9	2	NaN	NaN	NaN	7.076E-09	1	11024	11024		137.62	95.299	1	113320			17549	3251	10089	10377	13933	13933					0.00487257268855501
MPVDDVIGTL	10	Unmodified	_MPVDDVIGTL_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.5390736660001	1	1059.53907	1058.5318	1.4879	0.0015765	0.52329	0.00055445	2.0112	0.0021309	1059.539864588328	29.786	0.21715	29.779	29.731	29.948	-0.0070648	168	133	1.5192716	0.07801187	1.5177522	308.22824	0	15.826965						370	10	2	NaN	NaN	NaN	3.5243E-06	1	10786	10786		125.02	87.717	1	114050			17550	3251	10089	10377	13934	13934					0.00487257268855501
MPVDDVIGTL	10	Oxidation (M)	_M(Oxidation (M))PVDDVIGTL_		M(1)PVDDVIGTL		M(50)PVDDVIGTL	0	0	1		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5339882881	1	1075.53399	1074.52671	1.4958	0.0016088	-2.6687	-0.0028702	-1.1728	-0.0012614	1075.5336862625788	27.302	0.16895	27.302	27.229	27.398	0	159	88	1.5245869	0.051376104	1.5245869	309.24738	0	10.421143						399	8	4	NaN	NaN	NaN	0.070973	1	11746	11746		49.961	28.126	1	66330			17551	3251	10089	10378	13935	13935		362			-0.007570465937760673
MPVDDVIGTL	10	Oxidation (M)	_M(Oxidation (M))PVDDVIGTL_		M(1)PVDDVIGTL		M(67)PVDDVIGTL	0	0	1		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5339882881	1	1075.53399	1074.52671	1.402	0.0015079	-1.0408	-0.0011194	0.36122	0.0003885	1075.5336850879562	27.301	0.14478	27.291	27.242	27.387	-0.010126	159	82	1.5245869	0.04782784	1.5230675	309.24734	0	9.7013855						348	7	4	NaN	NaN	NaN	0.013201	1	11444	11444		67.154	49.355	1	58826			17552	3251	10089	10378	13936	13936		362			-0.007570465937760673
MPVEPEEL	8	Unmodified	_MPVEPEEL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4441106483001	1	943.444111	942.436834	1.8574	0.0017523	1.198	0.0011302	3.0554	0.0028826	943.4455529972676	23.417	0.14473	23.417	23.369	23.513	0	372	130	1.3983358	0.07674682	1.3983358	284.14215	0	15.594971						301	7	3	NaN	NaN	NaN	0.071487	1	6865	6865		71.993	38.295	1	28623			17553	995	10090	10379	13937	13937					-0.036686762023464325
MPVEPEEL	8	Unmodified	_MPVEPEEL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4441106483001	1	943.444111	942.436834	2.0755	0.0019581	1.5552	0.0014673	3.6307	0.0034254	943.4464340410025	23.416	0.12072	23.403	23.379	23.5	-0.013294	366	124	1.4019053	0.0731771	1.4003859	284.86746	0	14.869629						286	6	3	NaN	NaN	NaN	0.16485	1	6729	6729		52.758	16.722	1	28913			17554	995	10090	10379	13938	13938					-0.036686762023464325
MPVERILEAEL	11	Unmodified	_MPVERILEAEL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3524880198	2	650.352488	1298.69042	1.5747	0.0010241	-3.8501	-0.0025039	-2.2753	-0.0014798	650.3498223540561	27.857	0.16891	27.857	27.76	27.929	0	1107	55	0.9552588	0.03298968	0.9552588	386.67715	0	13.353821						173	8	3	NaN	NaN	NaN	0.26275	1	18757	18757		26.96	7.8419	1	18063			17555	5463	10091	10380	13939	13939					0.053025511771011224
MPVERILEAEL	11	Unmodified	_MPVERILEAEL_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3524880198	2	650.352488	1298.69042	0.87419	0.00056853	-2.4214	-0.0015747	-1.5472	-0.0010062	650.3515862339056	27.88	0.14483	27.87	27.822	27.967	-0.009552	1110	52	0.95342636	0.031155229	0.9519069	385.9354	0	12.611267						192	7	3	NaN	NaN	NaN	0.085079	1	17925	17925		41.017	23.818	1	20748			17556	5463	10091	10380	13940	13940					0.053025511771011224
MPVETFSEF	9	Oxidation (M)	_M(Oxidation (M))PVETFSEF_		M(1)PVETFSEF		M(55)PVETFSEF	0	0	1		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.4761390581998	1	1102.47614	1101.46886	2.0174	0.0022241	-1.7512	-0.0019307	0.26616	0.00029343	1103.4762485132485	25.612	0.14472	25.612	25.515	25.66	0	132	58	1.5405227	0.033631682	1.5405227	312.38284	0	6.819702						193	7	3	NaN	NaN	NaN	0.032826	1	12889	12889		55.413	12.418	1	12851			17557	2533	10092	10381	13941	13941		295			-0.07781308519224694
MPVETFSEF	9	Oxidation (M)						0	0	1		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1102.47614	1101.46886	2.26	0.0024916	-1.2404	-0.0013675	1.0195	0.001124	1103.4773792421013	25.588	0.193	25.576	25.503	25.696	-0.0116	126	55	1.544062	0.031859875	1.5425426	313.10052		6.460449	-0.017961	0.00026785	0.0010099	NaN	55.413	154	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12387			17558	2533	10092	10381				295			-0.07781308519224694
MPVEVQTEL	9	Unmodified	_MPVEVQTEL_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5234236018	1	1045.52342	1044.51615	1.5848	0.0016569	-0.95891	-0.0010026	0.62588	0.00065438	1045.5231801407306	24.55	0.24119	24.55	24.381	24.623	0	192	82	1.5050892	0.047888756	1.5050892	305.40363	0	9.717285						247	11	3	NaN	NaN	NaN	0.022082	1	10396	10396		69.363	30.445	1	20007			17559	4832	10093	10382	13942	13942					-0.004330292482109144
MPVEVQTEL	9	Unmodified	_MPVEVQTEL_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5234236018	1	1045.52342	1044.51615	1.3833	0.0014462	0.95639	0.00099993	2.3397	0.0024462	1045.5239327075637	24.574	0.12067	24.562	24.489	24.61	-0.012392	192	94	1.5050892	0.054971695	1.5035697	305.40363	0	11.1545105						205	6	3	NaN	NaN	NaN	0.12104	1	10188	10188		32.778	12.09	1	15873			17560	4832	10093	10382	13943	13943					-0.004330292482109144
MPVFPDFKM	9	Unmodified	_MPVFPDFKM_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2693811671	2	556.269381	1110.52421	1.4286	0.00079469	0.24334	0.00013536	1.672	0.00093006	556.2714918579203	28.629	0.12064	28.629	28.581	28.701	0	1251	67	0.8670771	0.04050398	0.8670771	351.60745	0	16.424744						297	6	4	NaN	NaN	NaN	0.052553	1	13295	13295		45.827	12.128	1	52422			17561	351	10094	10383	13944	13944					-0.02663173532437213
MPVFPDFKM	9	Unmodified	_MPVFPDFKM_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2693811671	2	556.269381	1110.52421	1.1184	0.00062211	0.084837	4.7192E-05	1.2032	0.0006693	556.2696125768365	28.652	0.12064	28.644	28.596	28.716	-0.0083485	1248	70	0.8689189	0.042342782	0.86739945	352.35434	0	17.17038						237	6	3	NaN	NaN	NaN	0.17328	1	12914	12914		27.046	11.871	1	43724			17562	351	10094	10383	13945	13945					-0.02663173532437213
MPVFPDFKM	9	Oxidation (M)	_MPVFPDFKM(Oxidation (M))_		MPVFPDFKM(1)		M(-41)PVFPDFKM(41)	0	0	1		nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.26683847815	2	564.266838	1126.51912	1.617	0.00091242	-1.1449	-0.00064601	0.47213	0.00026641	564.2667632621769	25.153	0.12066	25.141	25.093	25.214	-0.012011	1245	61	0.87076044	0.036825776	0.869241	353.03964	0	14.9305725						289	6	4	NaN	NaN	NaN	0.064504	1	13511	13511		40.957	28.908	2	62100			17563	351	10094	10384	13946	13946		32			-0.03907477395068781
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant;nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4	TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant	TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.73042318209997	2	471.730423	941.446293	1.3537	0.00063856	-1.1715	-0.00055265	0.18212	8.5913E-05	471.73008303638716	19.444	0.12	19.444	19.396	19.516	0	1314	40	0.8283535	0.024000287	0.8283535	336.6432	0	9.753723						78	6	2	NaN	NaN	NaN	0.56671	1	6839	6839		6.8632	2.4501	1	7898.1			17564	1092	10095	10385	13947	13947					-0.026771863978297006
MPVGMTHGL	9	Unmodified	_MPVGMTHGL_					0	0	0		TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant;TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant;nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4	TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant	TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.73042318209997	2	471.730423	941.446293	0.49863	0.00023522	-1.0533	-0.00049686	-0.55464	-0.00026164	471.73042306808134	19.466	0.14436	19.452	19.404	19.549	-0.014141	1314	37	0.8283535	0.022155285	0.8268341	336.6432	0	9.003937						106	7	3	NaN	NaN	NaN	0.27442	1	6704	6704		20.555	4.1388	1	9160			17565	1092	10095	10385	13948	13948					-0.026771863978297006
MPVGPAPGM	9	Unmodified	_MPVGPAPGM_					0	0	0		ENST00000514820.1_1_3:129918586-129918748:+|nuORF;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENSG00000124562|ENST00000244520|SNRPC	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.4055570725002	1	856.405557	855.398281	1.9738	0.0016903	-2.1904	-0.0018759	-0.21667	-0.00018556	856.4046683104224	21.778	0.16858	21.778	21.73	21.898	0	465	64	1.3429124	0.037604928	1.3429124	273.27972	0	7.652527						241	8	3	NaN	NaN	NaN	0.055365	1	5469	5469		44.632	28.216	1	23529			17566	2420	10096	10386	13949	13949					-0.03520260317850443
MPVGPAPGM	9	Unmodified	_MPVGPAPGM_					0	0	0		ENST00000514820.1_1_3:129918586-129918748:+|nuORF;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENSG00000124562|ENST00000244520|SNRPC	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4055570725002	1	856.405557	855.398281	1.2244	0.0010486	-1.3984	-0.0011976	-0.17394	-0.00014896	856.4053676548726	21.778	0.14442	21.764	21.715	21.86	-0.013895	465	61	1.3429124	0.035819888	1.341393	273.2797	0	7.289276						246	7	3	NaN	NaN	NaN	0.015198	1	5330	5330		78.076	53.115	1	23051			17567	2420	10096	10386	13950	13950					-0.03520260317850443
MPVGPAPGM	9	Oxidation (M)	_MPVGPAPGM(Oxidation (M))_		MPVGPAPGM(1)		M(-45)PVGPAPGM(45)	0	0	1		ENST00000514820.1_1_3:129918586-129918748:+|nuORF;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENSG00000124562|ENST00000244520|SNRPC	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	ENST00000514820.1_1_3:129918586-129918748:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4004716946002	1	872.400472	871.393195	1.8686	0.0016302	-0.016698	-1.4567E-05	1.8519	0.0016156	872.3998649005746	18.05	0.12005	18.036	17.988	18.108	-0.013786	504	70	1.3196158	0.04122579	1.3180964	268.4609	0	8.386932						114	6	2	NaN	NaN	NaN	0.055365	1	5537	5537		44.632	30.895	2	8101.8			17568	2420	10096	10387	13951	13951		271			-0.04764564180470643
MPVHAAVQM	9	Unmodified	_MPVHAAVQM_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.24369773285	2	492.243698	982.472843	2.294	0.0011292	-2.566	-0.0012631	-0.27199	-0.00013389	492.2426567507131	18.173	0.095961	18.173	18.125	18.221	0	1335	49	0.8154261	0.029562771	0.8154261	331.1903	0	12.007111						200	5	4	NaN	NaN	NaN	0.17818	1	7960	7960		26.732	4.8966	1	48229			17569	782	10097	10388	13952	13952					-0.019094975064831488
MPVHAAVQM	9	Unmodified	_MPVHAAVQM_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.24369773285	2	492.243698	982.472843	1.5816	0.00077852	-1.9588	-0.0009642	-0.3772	-0.00018567	492.2432508163304	18.194	0.071989	18.18	18.156	18.228	-0.01395	1338	55	0.81357855	0.033261716	0.8120591	330.4399	0	13.50946						197	4	4	NaN	NaN	NaN	0.062836	1	7792	7792		41.46	18.126	1	49145			17570	782	10097	10388	13953	13953					-0.019094975064831488
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-72)PVHAAVQM(72)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.24115504390005	2	500.241155	998.467757	1.5429	0.0007718	-1.0963	-0.00054842	0.44654	0.00022338	500.24094169736037	14.645	0.2641	14.645	14.573	14.837	0	1338	49	0.81357855	0.029562771	0.81357855	330.3668	0	12.004456						298	12	4	NaN	NaN	NaN	0.020004	1	8514	8514		71.993	28.217	2	86313			17571	782	10097	10389	13954	13954		79			-0.0315380136909198
MPVHAAVQM	9	Oxidation (M)	_MPVHAAVQM(Oxidation (M))_		MPVHAAVQM(1)		M(-100)PVHAAVQM(100)	0	0	1		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.24115504390005	2	500.241155	998.467757	1.112	0.00055626	-1.2235	-0.00061204	-0.11149	-5.577E-05	500.24140569329165	14.644	0.19176	14.633	14.585	14.776	-0.011219	1338	58	0.81357855	0.035100102	0.8120591	330.36682	0	14.252991						349	9	4	NaN	NaN	NaN	0.0055068	1	8332	8332		101.55	74.823	2	91679			17572	782	10097	10389	13955	13955		79			-0.0315380136909198
MPVILEVSL	9	Unmodified	_MPVILEVSL_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5747308908002	1	1000.57473	999.567454	1.4137	0.0014145	0.22387	0.000224	1.6376	0.0016385	1000.5748557555446	33.842	0.2896	33.842	33.793	34.083	0	198	154	1.5015416	0.09057176	1.5015416	304.86234	0	18.389038						587	13	2	NaN	NaN	NaN	0.012648	1	8585	8585		84.879	35.046	1	212830			17573	3021	10098	10390	13956	13956					0.06765339516505264
MPVILEVSL	9	Unmodified	_MPVILEVSL_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5747308908002	1	1000.57473	999.567454	1.3747	0.0013755	-0.70377	-0.00070417	0.67097	0.00067135	1000.5748552703468	33.816	0.36203	33.814	33.718	34.08	-0.0018463	198	139	1.5015416	0.08165312	1.5000222	304.86234	0	16.578278						908	16	4	NaN	NaN	NaN	0.011118	1	8406	8406		89.521	33.574	1	229700			17574	3021	10098	10390	13957	13957					0.06765339516505264
MPVILEVSL	9	Unmodified						0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.57473	999.567454	2.5194	0.0025209	-0.2684	-0.00026855	2.251	0.0022523	1000.5748993328522	34.227	0.048256	34.225	34.225	34.274	-0.0012474	195	40	1.5033154	0.023059964	1.501796	305.22247		4.681946	0.19186	-0.00045095	0.0001272	NaN	84.879	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2117.8			17575	3021	10098	10390							0.06765339516505264
MPVINYDLL	9	Unmodified	_MPVINYDLL_					0	0	0		nc|ENSG00000117602|Q9UKA8-6|RCAN3;nc|ENSG00000117602|Q9UKA8-5|RCAN3;nc|ENSG00000117602|Q9UKA8-2|RCAN3;ENSG00000117602|ENST00000374395|RCAN3	nc|ENSG00000117602|Q9UKA8-6|RCAN3	nc|ENSG00000117602|Q9UKA8-6|RCAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.564894486	1	1077.56489	1076.55762	1.1797	0.0012712	-9.2524	-0.0099701	-8.0727	-0.0086989	1077.5532838739084	32.008	0.16894	32.008	31.935	32.104	0	72	136	1.5758814	0.07957792	1.5758814	319.64432	0	16.141235						470	8	4	NaN	NaN	NaN	0.024221	1	11829	11829		66.656	44.821	1	65070			17576	2152	10099	10391	13958	13958					0.022401515111141634
MPVINYDLL	9	Unmodified	_MPVINYDLL_					0	0	0		nc|ENSG00000117602|Q9UKA8-6|RCAN3;nc|ENSG00000117602|Q9UKA8-5|RCAN3;nc|ENSG00000117602|Q9UKA8-2|RCAN3;ENSG00000117602|ENST00000374395|RCAN3	nc|ENSG00000117602|Q9UKA8-6|RCAN3	nc|ENSG00000117602|Q9UKA8-6|RCAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.564894486	1	1077.56489	1076.55762	1.1497	0.0012389	-10.965	-0.011815	-9.815	-0.010576	1077.5513727174334	32.007	0.19304	32.003	31.93	32.123	-0.0037575	72	136	1.5758814	0.07956946	1.5743619	319.64432	0	16.139496						465	9	3	NaN	NaN	NaN	0.02857	1	11516	11516		60.982	37.647	1	63698			17577	2152	10099	10391	13959	13959					0.022401515111141634
MPVLDVKL	8	Unmodified	_MPVLDVKL_					0	0	0		nc|ENSG00000114125|Q9UBF6-3|RNF7	nc|ENSG00000114125|Q9UBF6-3|RNF7	nc|ENSG00000114125|Q9UBF6-3|RNF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.7726139603	2	457.772614	913.530675	1.5985	0.00073173	-3.793	-0.0017363	-2.1945	-0.0010046	457.7709464824769	26.119	0.12069	26.119	26.094	26.215	0	1359	52	0.8006399	0.031435966	0.8006399	325.52338	0	12.781189						229	6	4	NaN	NaN	NaN	0.05596	1	6303	6303		76.739	29.603	1	56930			17578	7929	10100	10392	13960	13960					0.07045087690585206
MPVLDVKL	8	Unmodified	_MPVLDVKL_					0	0	0		nc|ENSG00000114125|Q9UBF6-3|RNF7	nc|ENSG00000114125|Q9UBF6-3|RNF7	nc|ENSG00000114125|Q9UBF6-3|RNF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.7726139603	2	457.772614	913.530675	1.6079	0.00073606	-4.4312	-0.0020285	-2.8233	-0.0012924	457.77105004730186	26.143	0.12069	26.131	26.107	26.228	-0.011137	1359	55	0.8006399	0.033283353	0.7991205	325.52338	0	13.532318						241	6	4	NaN	NaN	NaN	0.13059	1	6181	6181		58.235	25.783	1	50108			17579	7929	10100	10392	13961	13961					0.07045087690585206
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.27826044420004	2	508.27826	1014.54197	1.7382	0.00088347	-2.5198	-0.0012808	-0.78164	-0.00039729	508.27747572681403	27.76	0.12063	27.76	27.736	27.857	0	1293	58	0.84127116	0.03505075	0.84127116	341.53827	0	14.229858						171	6	3	NaN	NaN	NaN	0.20577	1	9157	9157		24.961	10.919	1	23734			17580	7911;2490	10101	10393	13962	13962					0.03527864994077845
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.5492444218002	1	1015.54924	1014.54197	2.6344	0.0026753	-1.3195	-0.00134	1.3149	0.0013353	1015.5490139950908	27.76	0.24131	27.76	27.712	27.953	0	192	175	1.5050892	0.10296488	1.5050892	305.5212	0	20.901062						806	11	5	NaN	NaN	NaN	0.0073225	1	9159	9159		97.85	53.211	1	435550			17581	7911;2490	10101	10393	13963	13963					0.03527864994077845
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.27826044420004	2	508.27826	1014.54197	0.87456	0.00044452	-2.9145	-0.0014814	-2.04	-0.0010369	508.27714313635477	27.783	0.19309	27.774	27.677	27.87	-0.009552	1293	64	0.84127116	0.038731933	0.8397517	341.53827	0	15.724365						251	9	4	NaN	NaN	NaN	0.10956	1	8983	8983		34.439	12.588	1	33566			17582	7911;2490	10101	10393	13964	13964					0.03527864994077845
MPVLEQSVL	9	Unmodified	_MPVLEQSVL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.5492444218002	1	1015.54924	1014.54197	2.011	0.0020422	-0.84599	-0.00085915	1.165	0.0011831	1015.5493991792421	27.783	0.21722	27.774	27.726	27.943	-0.009552	192	208	1.5050892	0.122564435	1.5035697	305.5212	0	24.879608						715	10	4	NaN	NaN	NaN	0.011693	1	8985	8985		87.778	43.14	1	419830			17583	7911;2490	10101	10393	13965	13965					0.03527864994077845
MPVLEQSVL	9	Oxidation (M)	_M(Oxidation (M))PVLEQSVL_		M(1)PVLEQSVL		M(46)PVLEQSVL	0	0	1		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5441590439	1	1031.54416	1030.53688	1.8766	0.0019358	-1.1797	-0.0012169	0.69696	0.00071894	1031.5432767906764	24.743	0.28953	24.743	24.647	24.936	0	150	139	1.5299006	0.08154917	1.5299006	310.4931	0	16.550415						849	13	5	NaN	NaN	NaN	0.052553	1	9805	9805		45.827	17.331	1	208470			17584	7911;2490	10101	10394	13966	13966		288			0.022835611314576454
MPVLEQSVL	9	Oxidation (M)	_M(Oxidation (M))PVLEQSVL_		M(1)PVLEQSVL		M(100)PVLEQSVL	0	0	1		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5441590439	1	1031.54416	1030.53688	1.5248	0.0015729	-0.49047	-0.00050594	1.0343	0.001067	1031.5442484715363	24.743	0.24122	24.731	24.658	24.9	-0.012394	150	136	1.5299006	0.07976377	1.5283811	310.4931	0	16.188019						737	11	5	NaN	NaN	NaN	0.006197	1	9600	9600		100.15	52.144	1	181600			17585	7911;2490	10101	10394	13967	13967		288			0.022835611314576454
MPVMEQSVL	9	Unmodified	_MPVMEQSVL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5056650476001	1	1033.50567	1032.49839	2.4218	0.0025029	-0.52744	-0.00054511	1.8943	0.0019578	1033.5051243281612	25.926	0.21719	25.926	25.877	26.094	0	186	130	1.5086359	0.076283336	1.5086359	306.16977	0	15.481293						433	10	2	NaN	NaN	NaN	0.02857	1	9880	9880		60.982	30.371	1	179280			17586	2129	10102	10395	13968	13968					-0.01656067774706571
MPVMEQSVL	9	Unmodified	_MPVMEQSVL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5056650476001	1	1033.50567	1032.49839	2.397	0.0024773	-0.75397	-0.00077924	1.643	0.0016981	1033.5047714685093	25.949	0.28963	25.938	25.841	26.131	-0.0116	186	154	1.5086359	0.09049487	1.5071164	306.16977	0	18.365479						508	13	2	NaN	NaN	NaN	0.022082	1	9672	9672		69.363	40.697	1	182210			17587	2129	10102	10395	13969	13969					-0.01656067774706571
MPVMEQSVL	9	Oxidation (M)	_MPVM(Oxidation (M))EQSVL_		M(0.011)PVM(0.989)EQSVL		M(-20)PVM(20)EQSVL	0	0	1		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5005796697	1	1049.50058	1048.4933	2.4262	0.0025463	-0.96514	-0.0010129	1.4611	0.0015334	1049.5004826682955	22.477	0.21685	22.477	22.405	22.621	0	180	88	1.5121819	0.0514251	1.5121819	306.82767	0	10.434357						652	10	4	NaN	NaN	NaN	0.041983	1	10563	10563		50.315	27.198	2	105770			17588	2129	10102	10396	13970	13970		244;245			-0.02900371637315402
MPVMEQSVL	9	Oxidation (M)	_M(Oxidation (M))PVMEQSVL_		M(0.992)PVM(0.008)EQSVL		M(21)PVM(-21)EQSVL	0	0	1		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5005796697	1	1049.50058	1048.4933	2.6875	0.0028206	-1.183	-0.0012416	1.5045	0.001579	1049.5001934044947	23.079	0.16858	23.079	23.007	23.176	0	141	109	1.5352125	0.06378722	1.5352125	311.50067	0	12.942688						523	8	4	NaN	NaN	NaN	0.028569	1	10564	10564		60.984	37.866	2	74335			17589	2129	10102	10396	13971	13971		244;245			-0.02900371637315402
MPVMEQSVL	9	Oxidation (M)	_MPVM(Oxidation (M))EQSVL_		M(0.001)PVM(0.999)EQSVL		M(-30)PVM(30)EQSVL	0	0	1		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.5005796697	1	1049.50058	1048.4933	1.6188	0.0016989	-0.43833	-0.00046003	1.1804	0.0012389	1049.5001923885432	22.476	0.26511	22.462	22.39	22.655	-0.013733	180	85	1.5121819	0.04964912	1.5106624	306.82767	0	10.074005						573	12	4	NaN	NaN	NaN	0.030696	1	10344	10344		58.2	24.501	2	96566			17590	2129	10102	10396	13972	13972		244;245			-0.02900371637315402
MPVMEQSVL	9	Oxidation (M)	_M(Oxidation (M))PVMEQSVL_		M(0.999)PVM(0.001)EQSVL		M(29)PVM(-29)EQSVL	0	0	1		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.5005796697	1	1049.50058	1048.4933	1.9138	0.0020085	-0.43963	-0.00046139	1.4741	0.0015471	1049.5002253157018	23.103	0.1928	23.09	23.017	23.21	-0.013294	138	100	1.5369828	0.058456182	1.5354633	311.85986	0	11.860992						509	9	4	NaN	NaN	NaN	0.032409	1	10345	10345		55.958	32.108	2	73304			17591	2129	10102	10396	13973	13973		244;245			-0.02900371637315402
MPVMEQSVL	9	2 Oxidation (M)	_M(Oxidation (M))PVM(Oxidation (M))EQSVL_		M(1)PVM(1)EQSVL		M(50)PVM(50)EQSVL	0	0	2		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4954942918002	1	1065.49549	1064.48822	2.1074	0.0022455	-1.2192	-0.001299	0.88826	0.00094644	1065.4947170691835	19.972	0.19238	19.972	19.876	20.069	0	150	85	1.5299006	0.049601793	1.5299006	310.36227	0	10.062439						429	9	4	NaN	NaN	NaN	0.041983	1	11319	11319		50.315	24.514	1	52963			17592	2129	10102	10397	13974	13974		244;245			-0.04144675499924233
MPVMEQSVL	9	2 Oxidation (M)	_M(Oxidation (M))PVM(Oxidation (M))EQSVL_		M(1)PVM(1)EQSVL		M(53)PVM(53)EQSVL	0	0	2		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4954942918002	1	1065.49549	1064.48822	1.4241	0.0015174	-0.0010873	-1.1585E-06	1.423	0.0015162	1065.4955576603488	19.972	0.19261	19.958	19.885	20.078	-0.014141	150	76	1.5299006	0.04428506	1.5283811	310.36227	0	8.983856						444	9	4	NaN	NaN	NaN	0.03533	1	11057	11057		53.14	27.339	1	50014			17593	2129	10102	10397	13975	13975		244;245			-0.04144675499924233
MPVMFFSTL	9	Unmodified	_MPVMFFSTL_					0	0	0		ENST00000419510.6_1_3:187451387-187451441:-|nuORF	ENST00000419510.6_1_3:187451387-187451441:-|nuORF	ENST00000419510.6_1_3:187451387-187451441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5205868303	1	1072.52059	1071.51331	1.0798	0.0011581	2.0725	0.0022228	3.1523	0.0033809	1072.52368555179	35.578	0.048248	35.578	35.554	35.603	0	105	73	1.5564433	0.042448282	1.5564433	315.72037	0	8.610504						106	3	3	NaN	NaN	NaN	0.60063	1	11625	11625		5.4659	1.0528	1	8729.5			17594	6903	10103	10398	13976	13976					-0.019585759067012987
MPVMFFSTL	9	Unmodified						0	0	0		ENST00000419510.6_1_3:187451387-187451441:-|nuORF	ENST00000419510.6_1_3:187451387-187451441:-|nuORF	ENST00000419510.6_1_3:187451387-187451441:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1072.52059	1071.51331	0.73733	0.0007908	2.842	0.0030481	3.5794	0.0038389	1072.522810180624	35.601	0.072353	35.602	35.553	35.626	0.00053024	99	73	1.5599792	0.042443752	1.5584598	316.4376		8.609619	0.011578	0.0004017	0.0010082	NaN	5.4659	138	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10690			17595	6903	10103	10398							-0.019585759067012987
MPVPEILQL	9	Unmodified	_MPVPEILQL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2964531973502	2	520.296453	1038.57835	1.06	0.00055149	-2.9727	-0.0015467	-1.9128	-0.00099522	520.2951245915787	33.648	0.21711	33.648	33.576	33.793	0	1290	85	0.84311575	0.0516119	0.84311575	342.1811	0	20.946838						463	10	5	NaN	NaN	NaN	0.021105	1	10154	10154		70.6	17.82	1	110250			17596	5367	10104	10399	13977	13977					0.060607418907920874
MPVPEILQL	9	Unmodified	_MPVPEILQL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2964531973502	2	520.296453	1038.57835	0.77434	0.00040288	-2.011	-0.0010463	-1.2367	-0.00064345	520.2956715553528	33.647	0.16891	33.645	33.573	33.742	-0.0018463	1287	82	0.8449601	0.049765885	0.84344065	342.92966	0	20.197662						470	8	5	NaN	NaN	NaN	0.04947	1	9947	9947		47.136	22.574	1	107640			17597	5367	10104	10399	13978	13978					0.060607418907920874
MPVPEILQL	9	Unmodified	_MPVPEILQL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5856299281002	1	1039.58563	1038.57835	0.58171	0.00060474	-0.93709	-0.00097419	-0.35538	-0.00036944	1039.5857564848384	33.647	0.12064	33.645	33.573	33.694	-0.0018463	126	148	1.544062	0.08669758	1.5425426	313.3351	0	17.593445						284	6	2	NaN	NaN	NaN	0.054111	1	9948	9948		45.165	19.364	1	44399			17598	5367	10104	10399	13979	13979					0.060607418907920874
MPVPEILQL	9	Oxidation (M)	_M(Oxidation (M))PVPEILQL_		M(1)PVPEILQL		M(68)PVPEILQL	0	0	1		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2939105084001	2	528.293911	1054.57327	0.89835	0.00047459	-1.036	-0.00054731	-0.13764	-7.2715E-05	528.2935956522089	30.727	0.14475	30.722	30.649	30.794	-0.0057545	1266	91	0.85786515	0.055244684	0.8563457	348.0981	0	22.416779						420	7	5	NaN	NaN	NaN	0.023074	1	10622	10622		68.108	18.275	1	77586			17599	5367	10104	10400	13980	13980		559			0.048164380281832564
MPVPGLAEE	9	Unmodified	_MPVPGLAEE_					0	0	0		ENST00000538576.5_1_1:113498371-113498416:-|nuORF	ENST00000538576.5_1_1:113498371-113498416:-|nuORF	ENST00000538576.5_1_1:113498371-113498416:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.73368576505	2	471.733686	941.452819	0.77162	0.000364	-4.0117	-0.0018924	-3.24	-0.0015284	471.7330387784552	19.466	0.12026	19.452	19.38	19.5	-0.014141	1377	46	0.7895419	0.027746618	0.78802246	320.8701	0	11.276245						82	6	2	NaN	NaN	NaN	0.47587	1	6706	6706		10.605	0	1	4918			17600	7487	10105	10401	13981	13981					-0.02024969965452783
MPVPTTPEF	9	Unmodified	_MPVPTTPEF_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.4913951919001	1	1018.4914	1017.48412	2.0509	0.0020888	0.70592	0.00071897	2.7568	0.0028077	1018.4918222201704	26.336	0.096493	26.324	26.276	26.373	-0.011137	231	76	1.4820169	0.044416666	1.4804975	300.82608	0	9.015869						146	5	2	NaN	NaN	NaN	0.20577	1	9081	9081		24.961	13.413	1	14378			17601	3082	10106	10402	13982	13982					-0.02392396931361418
MPVPTTPEF	9	Unmodified						0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1018.4914	1017.48412	2.7607	0.0028118	-1.4264	-0.0014528	1.3343	0.001359	1018.4902513102203	26.336	0.12069	26.336	26.288	26.408	0	231	76	1.4820169	0.044416666	1.4820169	300.82608		9.0159	0.0057035	-0.00079908	0.00075972	NaN	24.961	160	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13573			17602	3082	10106	10402							-0.02392396931361418
MPVPWPESSL	10	Unmodified	_MPVPWPESSL_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7811672739001	2	571.781167	1141.54778	0.72453	0.00041427	-4.1609	-0.0023791	-3.4364	-0.0019649	571.7779667851047	30.317	0.14474	30.311	30.263	30.407	-0.0064087	1263	79	0.85970795	0.047873557	0.8581885	348.50305	0	19.406647						274	7	4	NaN	NaN	NaN	0.0085408	1	14038	14038		73.133	44.237	1	31115			17603	14025	10107	10403	13983	13983					-0.017330364942608867
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF;ENSG00000100603|ENST00000261531|SNW1	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.78404431384996	2	500.784044	999.553536	1.6444	0.0008235	-2.0468	-0.001025	-0.40238	-0.00020151	500.783463982436	14.549	0.216	14.549	14.501	14.717	0	1278	52	0.85049206	0.031344235	0.85049206	345.35104	0	12.727661						324	10	5	NaN	NaN	NaN	0.029876	1	8580	8580		75.089	40.635	1	157600			17604	1263	10108	10404	13984	13984					0.05374106808051238
MPVRAADKL	9	Unmodified	_MPVRAADKL_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF;ENSG00000100603|ENST00000261531|SNW1	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.78404431384996	2	500.784044	999.553536	1.24	0.00062096	-1.0084	-0.00050501	0.23152	0.00011594	500.783887599423	14.644	0.3118	14.633	14.561	14.873	-0.011219	1278	58	0.85049206	0.03503555	0.8489726	345.35104	0	14.2265625						412	14	5	NaN	NaN	NaN	0.0056438	1	8402	8402		104.2	62.414	1	143820			17605	1263	10108	10404	13985	13985					0.05374106808051238
MPVSNEVDL	9	Oxidation (M)	_M(Oxidation (M))PVSNEVDL_		M(1)PVSNEVDL		M(48)PVSNEVDL	0	0	1		ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.4713880313002	1	1019.47139	1018.46411	2.2278	0.0022711	-0.27775	-0.00028316	1.95	0.001988	1019.4718785989581	20.79	0.096369	20.79	20.766	20.862	0	240	49	1.4766881	0.028431177	1.4766881	299.74054	0	5.7710266						88	5	2	NaN	NaN	NaN	0.04743	1	9305	9305		48.002	22.201	1	6365.3			17606	3512	10109	10405	13986	13986		391			-0.04438192661962148
MPVVAGAVF	9	Unmodified	_MPVVAGAVF_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.4804365751002	1	890.480437	889.47316	1.6671	0.0014845	-1.9768	-0.0017603	-0.30976	-0.00027584	890.4783433003793	28.507	0.072365	28.499	28.475	28.547	-0.0083485	402	40	1.3804773	0.023227215	1.3789579	280.75378	0	4.723816						71	4	2	NaN	NaN	NaN	0.36886	1	5809	5809		15.013	7.4227	1	4620.6			17607	3881	10110	10406	13987	13987					0.024002454850233335
MPVVAGAVF	9	Unmodified						0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	890.480437	889.47316	1.9648	0.0017496	1.7254	0.0015365	3.6902	0.0032861	890.4822580528688	28.508	0.048271	28.508	28.484	28.532	0	405	40	1.3786905	0.023229599	1.3786905	280.39035		4.7243347	0.0045259	0.0024191	-0.00013373	NaN	15.013	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3615.6			17608	3881	10110	10406							0.024002454850233335
MPVVAGAVFTL	11	Unmodified	_MPVVAGAVFTL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.6121790296002	1	1104.61218	1103.6049	0.9898	0.0010933	0.042145	4.6554E-05	1.0319	0.0011399	1104.6122449602963	33.214	0.072392	33.214	33.19	33.262	0	78	58	1.5723488	0.03356397	1.5723488	318.8288	0	6.805847						151	4	3	NaN	NaN	NaN	0.12501	1	13005	13005		37.302	21.84	1	16119			17609	3881	10111	10407	13988	13988					0.05724430782129275
MPVVAGAVFTL	11	Unmodified	_MPVVAGAVFTL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.6121790296002	1	1104.61218	1103.6049	1.0171	0.0011235	-0.12694	-0.00014021	0.89014	0.00098326	1104.612257138542	33.213	0.048279	33.21	33.186	33.235	-0.0024757	78	58	1.5723488	0.033560514	1.5708294	318.8288	0	6.8051453						131	3	3	NaN	NaN	NaN	0.17715	1	12655	12655		32.453	14.483	1	12997			17610	3881	10111	10407	13989	13989					0.05724430782129275
MPVVSELL	8	Unmodified	_MPVVSELL_					0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant;MUC5AC|p.S225T|1|0.28|ENSG00000215182|chr11:1163039-1163039|T/A|missense_variant;ENSG00000215182|ENST00000621226|MUC5AC	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4906669104001	1	887.490667	886.48339	0.85694	0.00076053	-8.6439	-0.0076714	-7.7869	-0.0069108	887.4828983059141	35.529	0.096523	35.529	35.505	35.602	0.00053024	972	175	1.0375156	0.105968654	1.0359962	211.01501	0	21.55243						191	5	2	NaN	NaN	NaN	0.84727	1	5774	5774		1.2418	0	1	11540			17611	7885	10112	10408	13990	13990					0.03560808419592831
MPVVSELL	8	Unmodified						0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant;MUC5AC|p.S225T|1|0.28|ENSG00000215182|chr11:1163039-1163039|T/A|missense_variant;ENSG00000215182|ENST00000621226|MUC5AC	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	887.490667	886.48339	1.176	0.0010437	-7.7318	-0.0068619	-6.5558	-0.0058182	887.4841348687366	35.53	0.072392	35.53	35.506	35.578	0	972	58	1.0375156	0.034652233	1.0375156	211.015		7.0477295	0.00049464	0.00045928	0.00075972	NaN	1.2418	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6122.7			17612	7885	10112	10408							0.03560808419592831
MPWGDHLDT	9	Unmodified	_MPWGDHLDT_					0	0	0			REV__CCNJ|p.E161K|1|0.17|ENSG00000107443|chr10:96056901-96056901|G/A|missense_variant	REV__CCNJ|p.E161K|1|0.17|ENSG00000107443|chr10:96056901-96056901|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.23184156785	2	536.231842	1070.44913	0.83	0.00044507	8.1329	0.0043611	8.9629	0.0048062	536.7364360476305	29.352	0.096516	29.344	29.32	29.417	-0.0077209	1272	70	0.854179	0.042406917	0.8526596	346.53607	0	17.204254						172	5	4	NaN	NaN	NaN	0.62619	1	11273	11273		4.4131	0.83987	1	21290	+		17613	8186	10113	10409	13991	13991					-0.08327639739331971
MPWILTDHIL	10	Unmodified	_MPWILTDHIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8337341606501	2	619.833734	1237.65292	0.77361	0.00047951	-0.75186	-0.00046603	0.021749	1.3481E-05	619.8333268005841	31.887	0.072416	31.887	31.863	31.935	0	1092	67	0.9644182	0.040299058	0.9644182	390.5873	0	16.321014						180	4	3	NaN	NaN	NaN	0.013201	1	17473	17473		67.154	41.039	1	23933			17614	601;6180	10114	10410	13992	13992					0.043595047021653954
MPWILTDHIL	10	Unmodified	_MPWILTDHIL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8337341606501	2	619.833734	1237.65292	0.17471	0.00010829	-1.4771	-0.00091556	-1.3024	-0.00080727	619.833718976065	31.934	0.12065	31.93	31.882	32.003	-0.0037613	1086	64	0.9680805	0.0384652	0.9665611	392.07056	0	15.578308						216	6	4	NaN	NaN	NaN	0.0016868	1	16739	16739		87.021	59.725	1	23003			17615	601;6180	10114	10410	13993	13993					0.043595047021653954
MPWRCEIF	8	Unmodified	_MPWRCEIF_					0	0	0		ENST00000234739.7_1_1:147083377-147083515:+|nuORF	ENST00000234739.7_1_1:147083377-147083515:+|nuORF	ENST00000234739.7_1_1:147083377-147083515:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.25152276495	2	541.251523	1080.48849	1.6929	0.00091626	0.40615	0.00021983	2.099	0.0011361	541.2528823102849	20.141	0.19222	20.141	20.093	20.285	0	1281	79	0.84864825	0.047909796	0.84864825	344.25165	0	19.434479						400	9	3	NaN	NaN	NaN	0.69898	1	11990	11990		19.118	3.6556	1	46801			17616	6254	10115	10411	13994	13994					-0.04853210989449508
MPYEFDIRV	9	Unmodified	_MPYEFDIRV_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;SULF2-YLPM1|1|fusion	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2866167925499	2	585.286617	1168.55868	1.7859	0.0010453	2.5012	0.0014639	4.2871	0.0025092	585.7891372946686	26.746	0.16943	26.746	26.722	26.891	0	1221	97	0.885486	0.058851242	0.885486	358.85373	0	23.85019						311	8	4	NaN	NaN	NaN	0.13999	1	15439	15439		30.035	18.487	1	50311			17617	5640	10116	10412	13995	13995					-0.018856341200034876
MPYEFDIRVP	10	Unmodified	_MPYEFDIRVP_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;SULF2-YLPM1|1|fusion	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8129987185499	2	633.812999	1265.61144	1.5963	0.0010118	-0.93327	-0.00059152	0.66303	0.00042024	633.811942985	27.736	0.16889	27.736	27.664	27.833	0	1206	34	0.894683	0.020226836	0.894683	362.2564	0	8.18985						142	8	3	NaN	NaN	NaN	0.18729	1	18122	18122		36.622	26.262	1	12442			17618	5640	10117	10413	13996	13996					-0.010736760571944615
MPYEFDIRVP	10	Unmodified						0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;SULF2-YLPM1|1|fusion	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.812999	1265.61144	1.2085	0.00076599	-1.4462	-0.0009166	-0.23764	-0.00015062	633.8119854119547	27.783	0.16898	27.774	27.702	27.87	-0.009552	1203	34	0.8965218	0.020226836	0.89500237	363.00092		8.18985	0.018935	-0.00033622	0.00015968	NaN	36.622	144	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12131			17619	5640	10117	10413							-0.010736760571944615
MPYEFDIRVPF	11	Unmodified	_MPYEFDIRVPF_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;SULF2-YLPM1|1|fusion	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3472056766499	2	707.347206	1412.67986	0.72624	0.00051371	-2.3078	-0.0016324	-1.5816	-0.0011187	707.3455964389816	31.742	0.072411	31.742	31.742	31.815	0	1107	55	0.9552588	0.032964826	0.9552588	386.34857	0	13.332428						49	4	2	NaN	NaN	NaN	0.77378	1	20165	20165		1.3312	0	1	3577.1			17620	5640	10118	10414	13997	13997					-0.009974314773671722
MPYEFDIRVPF	11	Unmodified						0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;SULF2-YLPM1|1|fusion	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	707.347206	1412.67986	1.387	0.00098107	0.18603	0.00013159	1.573	0.0011127	707.3501522805794	31.789	0.048319	31.785	31.737	31.785	-0.0044174	1068	37	0.97906286	0.021957576	0.9775434	395.97598		8.880585	0.021406	0.00227	0.011142	NaN	1.3312	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2323.4			17621	5640	10118	10414							-0.009974314773671722
MPYFGEKEIEM	11	Unmodified	_MPYFGEKEIEM_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3094315743501	2	687.309432	1372.60431	1.8279	0.0012563	-0.41034	-0.00028203	1.4175	0.00097429	687.3083660958015	24.84	0.048267	24.84	24.816	24.864	0	1068	91	0.97906286	0.05490583	0.97906286	396.08804	0	22.212616						135	3	2	NaN	NaN	NaN	0.58035	1	19818	19818		15.311	3.2623	1	12965			17622	3957	10119	10415	13998	13998					-0.0670877671989274
MPYFGEKEIEM	11	Unmodified	_MPYFGEKEIEM_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3094315743501	2	687.309432	1372.60431	1.5118	0.0010391	-0.84739	-0.00058242	0.66442	0.00045666	687.3098405292321	24.84	0.072359	24.827	24.803	24.875	-0.012392	1068	85	0.97906286	0.05122894	0.9775434	396.08804	0	20.725067						146	4	3	NaN	NaN	NaN	0.65815	1	18883	18883		10.204	0.45777	1	9571.2			17623	3957	10119	10415	13999	13999					-0.0670877671989274
MPYGSLYNVL	10	Unmodified	_MPYGSLYNVL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.788992306	2	578.788992	1155.56343	1.4064	0.000814	-4.6526	-0.0026929	-3.2462	-0.0018789	578.7850695916986	30.56	0.096542	30.56	30.511	30.608	0	1185	67	0.90755045	0.040442765	0.90755045	367.8439	0	16.39206						159	5	3	NaN	NaN	NaN	0.37681	1	15006	15006		24.562	4.0066	1	14156			17624	4470	10120	10416	14000	14000					-0.00812749977239946
MPYLEHESF	9	Unmodified	_MPYLEHESF_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.75514948865	2	576.755149	1151.49575	2.0327	0.0011724	-0.81017	-0.00046727	1.2225	0.00070508	576.7544286552697	22.115	0.26539	22.115	22.043	22.308	0	1203	94	0.8965218	0.05702758	0.8965218	363.38895	0	23.115082						508	12	4	NaN	NaN	NaN	0.021105	1	14850	14850		70.6	38.924	1	119100			17625	1148	10121	10417	14001	14001					-0.07394199908048904
MPYLEHESF	9	Unmodified	_MPYLEHESF_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.75514948865	2	576.755149	1151.49575	1.2752	0.00073549	0.32394	0.00018684	1.5992	0.00092233	576.7555476772112	22.115	0.24115	22.101	22.029	22.27	-0.013731	1206	97	0.894683	0.058870375	0.89316356	362.64362	0	23.86203						499	11	4	NaN	NaN	NaN	0.018156	1	14343	14343		74.332	48.217	1	117450			17626	1148	10121	10417	14002	14002					-0.07394199908048904
MPYLEHESF	9	Oxidation (M)	_M(Oxidation (M))PYLEHESF_		M(1)PYLEHESF		M(93)PYLEHESF	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7526067997	2	584.752607	1167.49066	2.0784	0.0012154	0.39837	0.00023295	2.4768	0.0014483	584.7529691300803	19.252	0.26393	19.252	19.156	19.42	0	1218	94	0.8873258	0.05702758	0.8873258	359.60318	0	23.111359						571	12	3	NaN	NaN	NaN	0.0094682	1	15385	15385		93.472	72.958	1	74167			17627	1148	10121	10418	14003	14003		126			-0.08638503770657735
MPYLEHESF	9	Oxidation (M)	_M(Oxidation (M))PYLEHESF_		M(1)PYLEHESF		M(50)PYLEHESF	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7526067997	2	584.752607	1167.49066	1.6141	0.00094386	-0.69408	-0.00040586	0.92004	0.000538	584.7522194340661	19.274	0.24029	19.26	19.14	19.38	-0.014143	1221	97	0.885486	0.058870375	0.88396657	358.85757	0	23.858185						383	11	4	NaN	NaN	NaN	0.043119	1	14854	14854		49.833	34.37	1	53439			17628	1148	10121	10418	14004	14004		126			-0.08638503770657735
MPYNYPVLL	9	Unmodified	_MPYNYPVLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2886281652501	2	555.288628	1108.5627	0.52344	0.00029066	0.69288	0.00038475	1.2163	0.00067541	555.2886498750327	31.428	0.14481	31.428	31.356	31.501	0	1233	88	0.87812483	0.053348422	0.87812483	356.09512	0	21.633728						215	7	3	NaN	NaN	NaN	0.032417	1	13230	13230		55.947	29.832	1	33452			17629	1392	10122	10419	14005	14005					0.012764553737270035
MPYNYPVLL	9	Unmodified	_MPYNYPVLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2886281652501	2	555.288628	1108.5627	0.80004	0.00044425	4.2647	0.0023681	5.0647	0.0028124	555.7948177389222	31.451	0.21718	31.447	31.35	31.568	-0.0044155	1227	100	0.88180584	0.060706794	0.8802864	357.58783	0	24.617676						353	10	4	NaN	NaN	NaN	0.032417	1	12853	12853		55.947	23.495	1	53855			17630	1392	10122	10419	14006	14006					0.012764553737270035
MPYNYPVLL	9	Oxidation (M)	_M(Oxidation (M))PYNYPVLL_		M(1)PYNYPVLL		M(59)PYNYPVLL	0	0	1		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.564894486	1	1125.56489	1124.55762	2.0295	0.0022843	-0.27963	-0.00031474	1.7499	0.0019696	1125.5643565505782	29.642	0.14482	29.642	29.57	29.715	0	96	67	1.5617468	0.03886974	1.5617468	316.6061	0	7.879883						183	7	2	NaN	NaN	NaN	0.030391	1	13867	13867		58.599	31.868	1	16313			17631	1392	10122	10420	14007	14007		158			0.00032151511118172493
MQPRMFFLF	9	Unmodified	_MQPRMFFLF_					0	0	0		ENST00000451107.3_1_12:95475298-95611245:-|nuORF;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENST00000451107.3_1_12:95475298-95611245:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8039224762001	2	608.803922	1215.59329	0.76463	0.00046551	0.54331	0.00033077	1.3079	0.00079628	608.8034569272612	32.997	0.24138	32.997	32.9	33.142	0	1158	88	0.92408	0.053239048	0.92408	374.32535	0	21.56601						517	11	4	NaN	NaN	NaN	0.16171	1	16872	16872		27.789	9.9898	1	59152			17632	5188	10123	10421	14008	14008					-0.005880895128711927
MQPRMFFLF	9	Unmodified						0	0	0		ENST00000451107.3_1_12:95475298-95611245:-|nuORF;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENST00000451107.3_1_12:95475298-95611245:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	608.803922	1215.59329	0.52979	0.00032254	-0.92559	-0.0005635	-0.3958	-0.00024097	608.8035441680787	33.092	0.217	33.09	32.945	33.162	-0.0024757	1158	100	0.92408	0.060569286	0.9225606	374.32535		24.53534	0.046413	-0.0010453	-0.00075972	NaN	27.789	410	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43710			17633	5188	10123	10421							-0.005880895128711927
MQPSHIMLPS	10	Unmodified	_MQPSHIMLPS_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7806443451501	2	570.780644	1139.54674	0.95271	0.00054379	-5.5382	-0.0031611	-4.5855	-0.0026173	570.7769956673009	30.945	0.14479	30.94	30.891	31.036	-0.0050716	1164	70	0.9204082	0.042255938	0.91888875	373.11716	0	17.129822						132	7	2	NaN	NaN	NaN	0.66626	1	13954	13954		10.36	0.61416	1	14071	+		17634	9834	10124	10422	14009	14009					-0.01745574134815797
MQQQNLFGAF	10	Unmodified	_MQQQNLFGAF_					0	0	0			REV__nc|ENSG00000182010|Q8IZC4-2|RTKN2	REV__nc|ENSG00000182010|Q8IZC4-2|RTKN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2818657656501	2	592.281866	1182.54918	0.94419	0.00055923	-1.6622	-0.00098449	-0.718	-0.00042526	592.7833874280052	22.621	0.14472	22.607	22.583	22.728	-0.01354	1173	58	0.91489893	0.034895778	0.9133795	370.7225	0	14.139984						149	7	2	NaN	NaN	NaN	0.75966	1	15312	15312		3.9685	0	1	25084	+		17635	10855	10125	10423	14010	14010					-0.0347940240551452
MQRILIPF	8	Unmodified	_MQRILIPF_					0	0	0		ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.29933023730007	2	509.29933	1016.58411	1.7137	0.00087281	-0.21987	-0.00011198	1.4939	0.00076083	509.2988736876649	20.237	0.072121	20.237	20.213	20.285	0	1278	64	0.85049206	0.03871101	0.85049206	345.27246	0	15.715424						77	4	2	NaN	NaN	NaN	0.84651	1	9250	9250		1.6704	0	1	8147.1			17636	3434	10126	10424	14011	14011					0.07647885193114234
MQRILIPF	8	Unmodified						0	0	0		ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.29933	1016.58411	1.7484	0.00089045	3.082	0.0015697	4.8304	0.0024601	509.300855108172	20.261	0.048079	20.246	20.222	20.271	-0.014141	1287	55	0.8449601	0.033186257	0.84344065	343.02667		13.472565	0.0048383	0.0018667	-0.0035257	NaN	1.6704	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4471			17637	3434	10126	10424							0.07647885193114234
MQSILKQRLWY	11	Unmodified	_MQSILKQRLWY_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.4028465686001	2	733.402847	1464.79114	1.2386	0.00090841	5.3414	0.0039174	6.58	0.0048258	733.406917010231	20.694	0.048203	20.694	20.67	20.718	0	1014	34	1.0119673	0.020089984	1.0119673	409.14276	0	8.122437						42	3	2	NaN	NaN	NaN	0.71564	1	20453	20453		6.4299	2.5018	1	4631.6	+		17638	9488	10127	10425	14012	14012					0.07733627950642585
MQSILKQRLWY	11	Unmodified						0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	733.402847	1464.79114	1.2386	0.00090841	5.3414	0.0039174	6.58	0.0048258	733.406917010231	20.694	0.048203	20.694	20.67	20.718	0	1014	34	1.0119673	0.020089984	1.0119673	409.14276		8.122437	-0.0051932	-0.00053568	-0.00015336	NaN	6.4299	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4631.6	+		17639	9488	10127	10425							0.07733627950642585
MQSILKQRLWY	11	Unmodified						0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	733.402847	1464.79114	1.8324	0.0013439	5.9875	0.0043913	7.82	0.0057352	733.408524731907	20.718	0.04821	20.704	20.68	20.728	-0.014086	1011	31	1.0137935	0.018260598	1.012274	409.8811		7.3828125	0.0051932	0.00041204	0.00015336	NaN	6.4299	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3359.1	+		17640	9488	10127	10425							0.07733627950642585
MQVQPVTPF	9	Unmodified	_MQVQPVTPF_					0	0	0			REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5339287086	1	1046.53393	1045.52665	1.1768	0.0012315	5.8236	0.0060946	7.0003	0.0073261	1046.5408494654785	32.875	0.12061	32.872	32.824	32.945	-0.0031052	117	88	1.5493695	0.051305294	1.54785	314.38474	0	10.410431						196	6	2	NaN	NaN	NaN	0.41766	1	10236	10236		13.003	3.8796	1	23414	+		17641	12273	10128	10426	14013	14013					0.005709981968720967
MQVQPVTPF	9	Unmodified						0	0	0			REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1046.53393	1045.52665	1.4984	0.0015681	6.6646	0.0069748	8.1631	0.0085429	1046.5417854528198	32.876	0.16892	32.876	32.756	32.925	0	120	94	1.5476005	0.05486095	1.5476005	314.0258		11.131897	0.0020855	0.0002723	-0.00012476	NaN	13.003	238	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27048	+		17642	12273	10128	10426							0.005709981968720967
MQVQPVTPF	9	Unmodified						0	0	0			REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1046.53393	1045.52665	1.1768	0.0012315	5.8236	0.0060946	7.0003	0.0073261	1046.5408494654785	32.875	0.12061	32.872	32.824	32.945	-0.0031052	117	88	1.5493695	0.051305294	1.54785	314.38474		10.410431	-0.0020855	-0.00060791	0.00012476	NaN	13.003	196	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23414	+		17643	12273	10128	10426							0.005709981968720967
MQWWHQLEEEH	11	Unmodified	_MQWWHQLEEEH_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2261088719667	3	518.226109	1551.6565	2.2335	0.0011574	-9.727	-0.0050408	-7.4935	-0.0038833	518.5548356390663	11.764	0.096073	11.764	11.668	11.764	0	1431	25	0.75620437	0.014831126	0.75620437	458.36215	0	8.989685						58	5	2	NaN	NaN	NaN	0.7806	1	20700	20700		0.1369	0.035388	1	2885.3	+		17644	10244	10129	10427	14014	14014					-0.09726477261915534
MRDFGLNR	8	Unmodified	_MRDFGLNR_					0	0	0			REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.75581819065	2	504.755818	1007.49708	1.3005	0.00065645	-4.4245	-0.0022333	-3.1239	-0.0015768	504.7540755335453	32.756	0.12064	32.756	32.683	32.804	0	1287	31	0.8449601	0.01844281	0.8449601	343.06802	0	7.4880676						71	6	2	NaN	NaN	NaN	0.79607	1	8876	8876		9.746	1.5012	1	5685	+		17645	12928	10130	10428	14015	14015					-0.00636521028604875
MREHIQFF	8	Unmodified	_MREHIQFF_					0	0	0			REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2738437683001	2	554.273844	1106.53313	1.6196	0.00089768	-2.3852	-0.0013221	-0.76569	-0.0004244	554.273129004387	20.549	0.096195	20.535	20.439	20.535	-0.014141	1485	43	0.72280174	0.025999546	0.7212823	293.11548	0	10.543518						59	5	2	NaN	NaN	NaN	0.84887	1	12755	12755		0.32989	0	1	4851.9	+		17646	11154	10131	10429	14016	14016					-0.015870638517299085
MRFHYHTLRL	10	Unmodified	_MRFHYHTLRL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3665984480501	2	687.366598	1372.71864	2.2571	0.0015515	-8.8109	-0.0060563	-6.5538	-0.0045049	687.359113071152	25.274	0.048185	25.262	25.238	25.286	-0.012011	918	43	1.070307	0.025477052	1.0687876	433.0013	0	10.306915						66	3	3	NaN	NaN	NaN	0.78193	1	18896	18896		0	0	1	4467.8			17647	5819	10132	10430	14017	14017					0.04719338667723605
MRGGLGVL	8	Unmodified	_MRGGLGVL_					0	0	0			REV__ENST00000367109.6_1_1:206808986-206811026:+|nuORF	REV__ENST00000367109.6_1_1:206808986-206811026:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.4603698350003	1	802.46037	801.453093	2.4176	0.00194	7.4429	0.0059726	9.8605	0.0079126	802.4649733130594	56.181	0.047947	56.181	56.133	56.181	0	375	31	1.3965509	0.017845154	1.3965509	284.49738	0	3.635315						37	3	2	NaN	NaN	NaN	0.84692	1	4766	4766		1.4396	0	1	1787.2	+		17648	11861	10133	10431	14018	14018					0.04442494545082809
MRGTRCLAEY	10	Unmodified	_MRGTRCLAEY_					0	0	0		ENSG00000163239|ENST00000368482|TDRD10;nc|ENSG00000163239|Q5VZ19|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.5268422755667	3	400.526842	1198.5587	1.9449	0.00077899	5.1593	0.0020664	7.1042	0.0028454	400.5291130363448	18.434	0.14411	18.42	18.348	18.492	-0.01395	1461	37	0.7376554	0.022270858	0.73613596	448.28018	0	13.53421						136	7	3	NaN	NaN	NaN	0.69717	1	15774	15774		6.6174	2.3073	1	10804			17649	4213	10134	10432	14019	14019					-0.03263957391618533
MRLQNLHSL	9	Unmodified	_MRLQNLHSL_					0	0	0			REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3056752129501	2	556.305675	1110.5968	2.1349	0.0011876	5.1075	0.0028413	7.2424	0.004029	556.3099597503273	25.998	0.12068	25.987	25.938	26.059	-0.011137	1200	64	0.89836043	0.038602352	0.896841	364.29282	0	15.653595						126	6	2	NaN	NaN	NaN	0.39244	1	12940	12940		14.042	4.9184	1	12992	+		17650	10956	10135	10433	14020	14020					0.04592296585337863
MRLQNLHSL	9	Unmodified						0	0	0			REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.305675	1110.5968	2.1349	0.0011876	5.1075	0.0028413	7.2424	0.004029	556.3099597503273	25.998	0.12068	25.987	25.938	26.059	-0.011137	1200	64	0.89836043	0.038602352	0.896841	364.29282		15.653595	0.0063856	-0.0010373	-0.00075972	NaN	14.042	126	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12992	+		17651	10956	10135	10433							0.04592296585337863
MRMVCVGYN	9	Unmodified	_MRMVCVGYN_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.7404649396501	2	536.740465	1071.46638	1.5275	0.0008199	4.5504	0.0024424	6.078	0.0032623	536.7426971878988	20.646	0.072233	20.646	20.597	20.67	0	1293	55	0.84127116	0.033196986	0.84127116	341.29532	0	13.467712						88	4	3	NaN	NaN	NaN	0.31737	1	11614	11614		17.799	3.7574	1	18814	+		17652	8574	10136	10434	14021	14021					-0.06649758729508903
MRQMLFYF	8	Unmodified	_MRQMLFYF_					0	0	0			REV__ENST00000377126.3_1_9:73001619-73001904:-|nuORF	REV__ENST00000377126.3_1_9:73001619-73001904:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.1857573963667	3	379.185757	1134.53544	2.3089	0.00087551	1.9409	0.00073597	4.2498	0.0016115	379.1875834629566	16.227	0.11989	16.214	16.142	16.262	-0.012995	1407	31	0.77102906	0.018522859	0.7695096	468.862	0	11.263702						96	6	3	NaN	NaN	NaN	0.84207	1	13797	13797		2.1763	0.2517	1	6892.2	+		17653	11942	10137	10435	14022	14022					-0.0264435143828905
MRSILLALE	9	Unmodified	_MRSILLALE_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.30735223465	2	523.307352	1044.60015	1.3662	0.00071494	-8.0743	-0.0042254	-6.7081	-0.0035104	523.3029238556833	29.498	0.2655	29.498	29.377	29.642	0	1194	85	0.902037	0.05145037	0.902037	366.0669	0	20.87973						487	12	3	NaN	NaN	NaN	0.66529	1	10421	10421		2.1763	0.93449	1	65386	+		17654	10485	10138	10436	14023	14023					0.07963546639325614
MRSILLALE	9	Unmodified						0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.307352	1044.60015	1.3662	0.00071494	-8.0743	-0.0042254	-6.7081	-0.0035104	523.3029238556833	29.498	0.2655	29.498	29.377	29.642	0	1194	85	0.902037	0.05145037	0.902037	366.0669		20.87973	0.016014	-0.00028335	0.00075972	NaN	2.1763	487	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65386	+		17655	10485	10138	10436							0.07963546639325614
MRSQSVQQL	9	Unmodified	_MRSQSVQQL_					0	0	0			REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7794902522002	2	538.77949	1075.54443	2.0296	0.0010935	-6.3199	-0.003405	-4.2903	-0.0023115	538.7756322769333	17.573	0.095848	17.573	17.549	17.645	0	1287	67	0.8449601	0.0405609	0.8449601	342.77542	0	16.454407						116	5	3	NaN	NaN	NaN	0.12328	1	11792	11792		32.453	6.3378	1	10825	+		17656	9329	10139	10437	14024	14024					0.009677134517460217
MRSQSVQQL	9	Unmodified						0	0	0			REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.77949	1075.54443	2.0296	0.0010935	-6.3199	-0.003405	-4.2903	-0.0023115	538.7756322769333	17.573	0.095848	17.573	17.549	17.645	0	1287	67	0.8449601	0.0405609	0.8449601	342.77542		16.454407	-0.00364	-0.0020061	0.00075972	NaN	32.453	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10825	+		17657	9329	10139	10437							0.009677134517460217
MRSQSVQQL	9	Unmodified						0	0	0			REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	REV__TSHZ3|p.T175M|1|0.32|ENSG00000121297|chr19:31279269-31279269|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.77949	1075.54443	1.6324	0.00087951	-1.6268	-0.00087648	0.0056301	3.0334E-06	538.7775447448871	17.594	0.09589	17.58	17.556	17.652	-0.013567	1287	76	0.8449601	0.046079576	0.84344065	342.77542		18.693085	0.00364	0.003051	-0.00075972	NaN	32.453	137	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12443	+		17658	9329	10139	10437							0.009677134517460217
MRSSSPILNEM	11	Unmodified	_MRSSSPILNEM_					0	0	0			REV__ENST00000578987.1_1_17:73231261-73231685:+|nuORF	REV__ENST00000578987.1_1_17:73231261-73231685:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.20565730416666	3	422.205657	1263.59514	0.93082	0.000393	-0.77334	-0.00032651	0.15748	6.6488E-05	422.2050895028189	12.03	0.1439	12.022	11.95	12.094	-0.0081863	1467	70	0.7339432	0.042720556	0.7324238	445.76334	0	25.946503						210	7	2	NaN	NaN	NaN	0.6875	1	17284	17284		3.9007	0	1	17924	+		17659	12861	10140	10438	14025	14025					-0.02611125285579874
MRSWMSRKM	9	Unmodified	_MRSWMSRKM_					0	0	0		ENST00000289734.11_1_8:41556976-41559097:-|nuORF	ENST00000289734.11_1_8:41556976-41559097:-|nuORF	ENST00000289734.11_1_8:41556976-41559097:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7935631426501	2	606.793563	1211.57257	1.0906	0.00066177	6.5644	0.0039832	7.655	0.004645	606.7987830926098	28.991	0.19306	28.991	28.967	29.16	0	1158	46	0.92408	0.027534425	0.92408	374.33926	0	11.154053						129	9	3	NaN	NaN	NaN	0.54912	1	16760	16760		7.5876	1.3374	1	17581			17660	6379	10141	10439	14026	14026					-0.02475003164181544
MSAAGDTC	8	Unmodified	_MSAAGDTC_					0	0	0			REV__nc|ENSG00000163867|O95789-5|ZMYM6	REV__nc|ENSG00000163867|O95789-5|ZMYM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.2698514521	1	755.269851	754.262575	1.2175	0.00091956	4.3685	0.0032994	5.586	0.0042189	755.2731154772025	30.414	0.3378	30.407	30.238	30.576	-0.0064106	588	85	1.2693287	0.050394654	1.2678093	258.85275	0	10.276947						476	15	3	NaN	NaN	NaN	0.8439	1	4051	4051		3.1533	0	1	43812	+		17661	10303	10142	10440	14027	14027					-0.12438579899333035
MSCCGGCF	8	Unmodified	_MSCCGGCF_					0	0	0		ENST00000471957.1_1_9:140482118-140482226:-|nuORF	ENST00000471957.1_1_9:140482118-140482226:-|nuORF	ENST00000471957.1_1_9:140482118-140482226:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.2292489658	1	807.229249	806.221972	1.4473	0.0011683	5.094	0.004112	6.5413	0.0052803	807.2344465371307	32.393	0.26545	32.389	32.341	32.606	-0.0037613	576	118	1.2765218	0.07014394	1.2750024	260.01984	0	14.287903						870	12	5	NaN	NaN	NaN	0.84651	1	4722	4722		1.6704	0.42852	1	197740			17662	7158	10143	10441	14028	14028					-0.1888896081496796
MSCCGGCF	8	Unmodified						0	0	0		ENST00000471957.1_1_9:140482118-140482226:-|nuORF	ENST00000471957.1_1_9:140482118-140482226:-|nuORF	ENST00000471957.1_1_9:140482118-140482226:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.229249	806.221972	1.9781	0.0015967	5.6838	0.0045882	7.6619	0.0061849	807.2348609941612	32.394	0.28955	32.394	32.345	32.635	0	579	115	1.2747238	0.06834173	1.2747238	259.6536		13.920807	0.0024245	0.00025304	-0.00013927	NaN	1.6704	901	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209660			17663	7158	10143	10441							-0.1888896081496796
MSDILNYLF	9	Unmodified	_MSDILNYLF_					0	0	0			REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.27571775525	2	558.275718	1114.53688	1.2589	0.00070284	1.9435	0.001085	3.2024	0.0017878	558.2778628086606	35.938	0.21697	35.94	35.916	36.132	0.0011024	1215	73	0.8891654	0.04414797	0.88764596	360.54855	0	17.901611						420	10	4	NaN	NaN	NaN	0.14301	1	13073	13073		29.598	10.48	1	90240	+		17664	9713	10144	10442	14029	14029					-0.015804388685637605
MSDILNYLF	9	Unmodified						0	0	0			REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.275718	1114.53688	1.3878	0.00077479	1.4257	0.00079595	2.8135	0.0015707	558.2776459785575	35.94	0.19281	35.94	35.916	36.109	0	1218	76	0.8873258	0.045984983	0.8873258	359.8026		18.646484	0.00027698	-0.00025679	-0.00016008	NaN	29.598	479	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97680	+		17665	9713	10144	10442							-0.015804388685637605
MSDILNYLF	9	Unmodified						0	0	0			REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	REV__LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.275718	1114.53688	1.2589	0.00070284	1.9435	0.001085	3.2024	0.0017878	558.2778628086606	35.938	0.21697	35.94	35.916	36.132	0.0011024	1215	73	0.8891654	0.04414797	0.88764596	360.54855		17.901611	-0.00027698	0.00032129	0.00016008	NaN	29.598	420	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90240	+		17666	9713	10144	10442							-0.015804388685637605
MSEDGFFYLSF	11	Unmodified	_MSEDGFFYLSF_					0	0	0		ENSG00000104951|ENST00000391826|IL4I1;nc|ENSG00000104951|Q96RQ9-2|IL4I1	ENSG00000104951|ENST00000391826|IL4I1	ENSG00000104951|ENST00000391826|IL4I1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.7866465823	2	671.786647	1341.55874	0.65532	0.00044024	-0.6687	-0.00044922	-0.013375	-8.9851E-06	671.7875710901809	33.576	0.096428	33.576	33.552	33.648	0	1086	43	0.9680805	0.02563101	0.9680805	391.73538	0	10.371643						140	5	3	NaN	NaN	NaN	0.65577	1	19427	19427		10.36	0.74852	1	14009			17667	1503	10145	10443	14030	14030					-0.09837678910639625
MSFTTRSTFS	10	Unmodified	_MSFTTRSTFS_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7713308691001	2	582.771331	1163.52811	2.2432	0.0013073	-5.1533	-0.0030032	-2.9101	-0.0016959	582.7682514737935	17.501	0.16775	17.501	17.477	17.645	0	1170	58	0.91673553	0.034907043	0.91673553	371.53677	0	14.147217						256	8	4	NaN	NaN	NaN	0.47601	1	15257	15257		20.449	4.986	1	41677			17668	1791;7535	10146	10444	14031	14031					-0.047114125050256916
MSFTTRSTFS	10	Unmodified						0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.771331	1163.52811	1.9103	0.0011133	-3.3604	-0.0019584	-1.4501	-0.00084509	582.7689113925768	17.57	0.19182	17.556	17.508	17.7	-0.013567	1170	52	0.91673553	0.03122592	0.9152161	371.53674		12.655334	0.027595	0.001394	-0.00075972	NaN	20.449	264	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44119			17669	1791;7535	10146	10444							-0.047114125050256916
MSGASAAA	8	Unmodified	_MSGASAAA_					0	0	0			REV__ENSG00000138316|ENST00000373207|ADAMTS14	REV__ENSG00000138316|ENST00000373207|ADAMTS14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.14978896015	2	333.149789	664.285025	1.3602	0.00045314	1.1049	0.00036811	2.4651	0.00082126	333.15017056143455	37.118	0.1445	37.121	37.072	37.217	0.0022507	1515	61	0.7042165	0.03720683	0.70269704	287.90515	0	15.211273						142	7	2	NaN	NaN	NaN	0.84727	1	2338	2338		1.2418	0	1	12138	+		17670	9724	10147	10445	14032	14032					-0.06054612439402263
MSGFTCPHCTE	11	Unmodified	_MSGFTCPHCTE_					0	0	0		ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7277514949	2	606.727751	1211.44095	1.3518	0.00082017	7.4184	0.004501	8.7702	0.0053211	606.7324109364035	17.57	0.14394	17.556	17.508	17.652	-0.013567	1209	43	0.892844	0.025753021	0.8913246	361.6862	0	10.432373						146	7	4	NaN	NaN	NaN	0.74155	1	16074	16074		4.7291	0.31598	1	12255			17671	1133	10148	10446	14033	14033					-0.15631278042610575
MSGGFMDMFGM	11	Unmodified	_MSGGFMDMFGM_					0	0	0		ENST00000541346.1_1_12:6859683-6861527:-|nuORF;ENSG00000089693|ENST00000203630|MLF2	ENST00000541346.1_1_12:6859683-6861527:-|nuORF	ENST00000541346.1_1_12:6859683-6861527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.7236232447001	2	605.723623	1209.43269	1.6248	0.00098416	-4.6031	-0.0027882	-2.9783	-0.001804	605.7215058096405	15.82	0.1437	15.807	15.759	15.903	-0.012611	1221	40	0.885486	0.02391994	0.88396657	358.71225	0	9.690033						147	7	3	NaN	NaN	NaN	0.60584	1	16033	16033		10.36	2.1153	1	11631			17672	1042	10149	10447	14034	14034					-0.16364548283581826
MSGGFMDMFGM	11	Unmodified						0	0	0		ENST00000541346.1_1_12:6859683-6861527:-|nuORF;ENSG00000089693|ENST00000203630|MLF2	ENST00000541346.1_1_12:6859683-6861527:-|nuORF	ENST00000541346.1_1_12:6859683-6861527:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.723623	1209.43269	1.3614	0.00082464	-4.1528	-0.0025155	-2.7914	-0.0016908	605.7207049889427	15.774	0.19186	15.774	15.75	15.942	0	1221	37	0.885486	0.022078753	0.885486	358.71225		8.944153	-0.016502	0.00027979	0.00075972	NaN	10.36	156	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11230			17673	1042	10149	10447							-0.16364548283581826
MSGYDQVL	8	Unmodified	_MSGYDQVL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENST00000502632.5_1_5:179042549-179043984:-|nuORF;ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000126945|ENST00000316594|HNRNPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4131448709	1	912.413145	911.405868	2.0567	0.0018766	-3.388	-0.0030913	-1.3313	-0.0012147	912.4134494217544	22.838	0.12062	22.838	22.814	22.935	0	354	46	1.4090419	0.026757836	1.4090419	286.458	0	5.4398804						136	6	3	NaN	NaN	NaN	0.7718	1	6239	6239		13.003	0.41496	1	10271			17674	2521;4653	10150	10448	14035	14035					-0.05337829516599868
MSGYDQVL	8	Unmodified	_MSGYDQVL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENST00000502632.5_1_5:179042549-179043984:-|nuORF;ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000126945|ENST00000316594|HNRNPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4131448709	1	912.413145	911.405868	1.8275	0.0016674	-0.82962	-0.00075695	0.99787	0.00091047	912.4145096376933	22.862	0.096367	22.848	22.8	22.896	-0.01354	354	46	1.4090419	0.026754975	1.4075224	286.458	0	5.4393005						106	5	2	NaN	NaN	NaN	0.6053	1	6119	6119		24.961	5.8427	1	9729.1			17675	2521;4653	10150	10448	14036	14036					-0.05337829516599868
MSIEAIFI	8	Unmodified	_MSIEAIFI_					0	0	0		tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.4906669103999	1	923.490667	922.48339	1.9409	0.0017924	-2.8984	-0.0026767	-0.95757	-0.00088431	923.4882306447079	29.956	0.16891	29.956	29.884	30.053	0	315	55	1.4322147	0.032066822	1.4322147	291.11703	0	6.5180054						162	8	2	NaN	NaN	NaN	0.74229	1	6449	6449		16.417	0	1	15013			17676	13878	10151	10449	14037	14037					0.01904808419578785
MSILSNRFSKC	11	Unmodified	_MSILSNRFSKC_					0	0	0			REV__ENSG00000169313|ENST00000302632|P2RY12	REV__ENSG00000169313|ENST00000302632|P2RY12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3232076516	2	643.323208	1284.63186	2.5794	0.0016594	0.51533	0.00033152	3.0947	0.0019909	643.3255437104932	25.901	0.19304	25.901	25.829	26.022	0	1080	91	0.9717421	0.054959178	0.9717421	393.39468	0	22.24936						386	9	4	NaN	NaN	NaN	0.20668	1	18511	18511		29.706	2.41	1	149920	+		17677	10544	10152	10450	14038	14038					0.0009317133096828911
MSILSNRFSKC	11	Unmodified						0	0	0			REV__ENSG00000169313|ENST00000302632|P2RY12	REV__ENSG00000169313|ENST00000302632|P2RY12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	643.323208	1284.63186	2.5794	0.0016594	0.51533	0.00033152	3.0947	0.0019909	643.3255437104932	25.901	0.19304	25.901	25.829	26.022	0	1080	91	0.9717421	0.054959178	0.9717421	393.39468		22.24936	0.0059001	0.0030897	0.00075972	NaN	29.706	386	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149920	+		17678	10544	10152	10450							0.0009317133096828911
MSKEQNFAH	9	Unmodified	_MSKEQNFAH_					0	0	0		ENST00000328434.7_1_17:40949862-40949913:-|nuORF	ENST00000328434.7_1_17:40949862-40949913:-|nuORF	ENST00000328434.7_1_17:40949862-40949913:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.25056563725	2	546.250566	1090.48658	1.5471	0.0008451	-3.691	-0.0020162	-2.1439	-0.0011711	546.2489291661003	16.278	0.12001	16.278	16.254	16.374	0	1269	43	0.8560222	0.025803149	0.8560222	347.2028	0	10.465759						112	6	2	NaN	NaN	NaN	0.49672	1	12410	12410		9.746	0	1	10752			17679	6499	10153	10451	14039	14039					-0.05504548473709292
MSKGYSLLI	9	Unmodified	_MSKGYSLLI_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2808031331501	2	506.280803	1010.54705	1.2134	0.0006143	5.9923	0.0030338	7.2057	0.0036481	506.28387142424845	21.826	0.14444	21.812	21.764	21.908	-0.013895	1314	64	0.8283535	0.03876543	0.8268341	336.31174	0	15.7388						153	7	2	NaN	NaN	NaN	0.64666	1	8830	8830		3.5698	0	1	12833	+		17680	8693	10154	10452	14040	14040					0.042201688566933626
MSLKNLYQLTF	11	Unmodified	_MSLKNLYQLTF_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.2443293160999	3	453.244329	1356.71116	1.0475	0.00047477	-1.968	-0.000892	-0.92054	-0.00041723	453.2438168952788	29.691	0.096523	29.691	29.667	29.763	0	1371	58	0.79324204	0.035141945	0.79324204	481.42163	0	21.32779						160	5	4	NaN	NaN	NaN	0.63477	1	19635	19635		8.4563	3.913	1	24782	+		17681	9515	10155	10453	14041	14041					0.0470714155674159
MSLKNLYQLTF	11	Unmodified						0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	453.244329	1356.71116	1.0475	0.00047477	-1.968	-0.000892	-0.92054	-0.00041723	453.2438168952788	29.691	0.096523	29.691	29.667	29.763	0	1371	58	0.79324204	0.035141945	0.79324204	481.42163		21.32779	-0.0080963	-0.00018317	0.00075972	NaN	8.4563	160	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24782	+		17682	9515	10155	10453							0.0470714155674159
MSLKNLYQLTF	11	Unmodified						0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	453.244329	1356.71116	0.82997	0.00037618	-1.6013	-0.0007258	-0.77138	-0.00034962	453.2440303819725	29.714	0.16887	29.707	29.659	29.828	-0.0070648	1371	55	0.79324204	0.03328693	0.7917226	481.42163		20.201965	0.0080963	0.00031543	-0.00075972	NaN	8.4563	196	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33459	+		17683	9515	10155	10453							0.0470714155674159
MSLKNMQML	9	Unmodified	_MSLKNMQML_					0	0	0			REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5359193185	1	1095.53592	1094.52864	0.96253	0.0010545	-1.1732	-0.0012853	-0.21071	-0.00023084	1095.5362552164545	31.958	0.12065	31.954	31.906	32.027	-0.0037613	123	91	1.5458313	0.05303228	1.5443119	313.48392	0	10.754578						144	6	2	NaN	NaN	NaN	0.6532	1	12272	12272		3.2116	0	1	12105	+		17684	11537	10156	10454	14042	14042					-0.01484032381176803
MSLKNMQML	9	Unmodified						0	0	0			REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1095.53592	1094.52864	1.4542	0.0015932	0.66365	0.00072706	2.1179	0.0023202	1095.5375788187544	31.959	0.048265	31.959	31.935	31.983	0	123	88	1.5458313	0.051278114	1.5458313	313.4839		10.398865	0.0024245	0.00084123	0.00075972	NaN	3.2116	118	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10457	+		17685	11537	10156	10454							-0.01484032381176803
MSLKNMQML	9	Unmodified						0	0	0			REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	REV__ENST00000259050.8_1_2:160615763-160619427:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1095.53592	1094.52864	0.96253	0.0010545	-1.1732	-0.0012853	-0.21071	-0.00023084	1095.5362552164545	31.958	0.12065	31.954	31.906	32.027	-0.0037613	123	91	1.5458313	0.05303228	1.5443119	313.48392		10.754578	-0.0024245	-0.0011712	-0.00075972	NaN	3.2116	144	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12105	+		17686	11537	10156	10454							-0.01484032381176803
MSLVFYFWF	9	Unmodified	_MSLVFYFWF_					0	0	0		ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.2989958863001	2	620.298996	1238.58344	1.0141	0.00062903	7.7483	0.0048063	8.7624	0.0054353	620.303085778534	32.611	0.096561	32.611	32.563	32.659	0	1194	79	0.902037	0.047754705	0.902037	365.32	0	19.340393						149	5	3	NaN	NaN	NaN	0.61413	1	17492	17492		4.9097	0	1	11531			17687	6917	10157	10455	14043	14043					-0.02630954246615147
MSLVFYFWF	9	Unmodified						0	0	0		ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.298996	1238.58344	0.67568	0.00041913	9.2944	0.0057653	9.9701	0.0061845	620.3037847592256	32.586	0.096466	32.583	32.534	32.631	-0.0031052	1188	43	0.90571284	0.025727928	0.9041934	366.8087		10.419678	-0.014148	0.0010332	0.0010782	NaN	4.9097	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7243.1			17688	6917	10157	10455							-0.02630954246615147
MSLVYFGR	8	Unmodified	_MSLVYFGR_					0	0	0		nc|ENSG00000198919|Q86Y13-2|DZIP3;ENSG00000198919|ENST00000361582|DZIP3	nc|ENSG00000198919|Q86Y13-2|DZIP3	nc|ENSG00000198919|Q86Y13-2|DZIP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.4971492718001	1	972.497149	971.489873	2.1171	0.0020588	-3.5243	-0.0034274	-1.4072	-0.0013685	972.4946276820527	28.146	0.072382	28.146	28.122	28.194	0	240	43	1.4766881	0.024874687	1.4766881	299.9341	0	5.052368						57	4	2	NaN	NaN	NaN	0.81251	1	7650	7650		7.5404	1.45	1	4496.1			17689	5838	10158	10456	14044	14044					0.0029874637097009327
MSRMMGTRPP	10	Unmodified	_MSRMMGTRPP_					0	0	0		ENST00000520793.5_1_6:90305719-90326311:+|nuORF;ENST00000369408.9_1_6:90305719-90326311:+|nuORF	ENST00000520793.5_1_6:90305719-90326311:+|nuORF	ENST00000520793.5_1_6:90305719-90326311:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.2777459029501	2	582.277746	1162.54094	1.6666	0.00097042	-3.5396	-0.0020611	-1.8731	-0.0010906	582.2731494787145	27.422	0.096546	27.411	27.363	27.46	-0.010126	1188	43	0.90571284	0.025722384	0.9041934	367.0731	0	10.424957						48	5	2	NaN	NaN	NaN	0.77024	1	14708	14708		2.8895	0.29002	1	4922.9			17690	6641	10159	10457	14045	14045					-0.033829959181275626
MSYDHVELTFN	11	Unmodified	_MSYDHVELTFN_					0	0	0		ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3004524493	2	678.300452	1354.58635	1.6378	0.0011109	-1.4402	-0.00097686	0.19766	0.00013407	678.8023511042804	26.456	0.072422	26.456	26.432	26.505	0	1104	40	0.9570911	0.023816884	0.9570911	387.25052	0	9.636597						114	4	4	NaN	NaN	NaN	0.75907	1	19598	19598		3.5794	0	1	11326			17691	2765	10160	10458	14046	14046					-0.07675775650409378
MSYKFFLDN	9	Unmodified	_MSYKFFLDN_					0	0	0			REV__chr2:127201331-127203372|456|13.23|0.75|4.15|-|2|CYP27C1,CYP27C1|1	REV__chr2:127201331-127203372|456|13.23|0.75|4.15|-|2|CYP27C1,CYP27C1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7733422418002	2	582.773342	1163.53213	2.3723	0.0013825	-8.1755	-0.0047645	-5.8032	-0.0033819	582.7684314530422	17.933	0.19186	17.933	17.885	18.077	0	1158	55	0.92408	0.033046663	0.92408	374.51337	0	13.3932495						230	9	4	NaN	NaN	NaN	0.51576	1	15258	15258		8.962	0.71716	1	41794	+		17692	8224	10161	10459	14047	14047					-0.04309323011284505
MSYKFFLDN	9	Unmodified						0	0	0			REV__chr2:127201331-127203372|456|13.23|0.75|4.15|-|2|CYP27C1,CYP27C1|1	REV__chr2:127201331-127203372|456|13.23|0.75|4.15|-|2|CYP27C1,CYP27C1|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.773342	1163.53213	2.3723	0.0013825	-8.1755	-0.0047645	-5.8032	-0.0033819	582.7684314530422	17.933	0.19186	17.933	17.885	18.077	0	1158	55	0.92408	0.033046663	0.92408	374.51337		13.3932495	-0.015555	-0.00037213	0.00075972	NaN	8.962	230	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41794	+		17693	8224	10161	10459							-0.04309323011284505
MTAPEYYEF	9	Unmodified	_MTAPEYYEF_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1150.4761390581998	1	1150.47614	1149.46886	2.8817	0.0033153	1.2595	0.001449	4.1412	0.0047643	1150.4754622866985	26.481	0.096508	26.481	26.456	26.553	0	87	76	1.5670487	0.044167757	1.5670487	317.59738	0	8.951599						139	5	3	NaN	NaN	NaN	0.12328	1	14773	14773		32.453	19.45	1	10549			17694	5102	10162	10460	14048	14048					-0.09989308519220685
MTASSGAG	8	Unmodified	_MTASSGAG_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.2872160758002	1	681.287216	680.27994	1.5009	0.0010225	3.1975	0.0021784	4.6984	0.0032009	681.290197710542	30.415	0.14478	30.415	30.366	30.511	0	1107	64	0.9552588	0.0384652	0.9552588	195.18275	0	7.859375						154	7	2	NaN	NaN	NaN	0.84692	1	2848	2848		1.4396	0	1	22684			17695	1846	10163	10461	14049	14049					-0.07298916302011094
MTCSIPVA	8	Unmodified	_MTCSIPVA_					0	0	0		ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.19842456194993	2	411.198425	820.382296	1.6111	0.0006625	-7.4122	-0.0030479	-5.801	-0.0023854	411.19583886537794	29.98	0.072403	29.98	29.956	30.029	0	1515	37	0.7042165	0.022311985	0.7042165	286.80066	0	9.0868225						76	4	2	NaN	NaN	NaN	0.80071	1	5020	5020		9.1232	3.0329	1	10709			17696	6268	10164	10462	14050	14050					-0.03507966554775521
MTCSIPVA	8	Unmodified	_MTCSIPVA_					0	0	0		ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.19842456194993	2	411.198425	820.382296	0.88128	0.00036238	-6.6264	-0.0027248	-5.7451	-0.0023624	411.196120168928	29.979	0.072378	29.973	29.949	30.021	-0.0064087	1515	37	0.7042165	0.02231443	0.70269704	286.80066	0	9.087799						105	4	4	NaN	NaN	NaN	0.8439	1	4910	4910		3.1533	0.36816	1	13351			17697	6268	10164	10462	14051	14051					-0.03507966554775521
MTCYGKEEYYQ	11	Unmodified	_MTCYGKEEYYQ_					0	0	0			REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	REV__tr|U7SM15|U7SM15_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02048PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.7863206188001	2	707.786321	1413.55809	1.8148	0.0012845	-4.7618	-0.0033703	-2.9469	-0.0020858	707.7817288531523	21.464	0.072247	21.45	21.402	21.475	-0.014006	1056	28	0.9863805	0.01646024	0.9848611	398.93317	0	6.657196						51	4	2	NaN	NaN	NaN	0.76488	1	19212	19212		2.8895	0.29002	1	3576.7	+		17698	13428	10165	10463	14052	14052					-0.132148416219934
MTEGAFLVRV	10	Unmodified	_MTEGAFLVRV_					0	0	0		nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8024340322501	2	561.802434	1121.59032	1.7825	0.0010014	-1.9729	-0.0011084	-0.19036	-0.00010694	561.8012446175911	27.712	0.096535	27.712	27.688	27.784	0	1224	91	0.883646	0.05520886	0.883646	358.28296	0	22.38498						328	5	3	NaN	NaN	NaN	0.60686	1	13755	13755		14.425	1.4222	1	64179			17699	5104	10166	10464	14053	14053					0.0343835863395725
MTEQMPHSL	9	Unmodified	_MTEQMPHSL_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.4754275517	1	1073.47543	1072.46815	2.0378	0.0021875	2.5677	0.0027564	4.6055	0.0049439	1073.4778328023813	26.215	0.072392	26.204	26.204	26.276	-0.011137	123	61	1.5458313	0.035392284	1.5443119	313.56418	0	7.179138						79	4	2	NaN	NaN	NaN	0.63698	1	11351	11351		3.9685	0.39873	1	7104.8	+		17700	9028	10167	10465	14054	14054					-0.06518426439902214
MTERWTEI	8	Unmodified	_MTERWTEI_					0	0	0			REV__ENSG00000100439|ENST00000428304|ABHD4	REV__ENSG00000100439|ENST00000428304|ABHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.25531666415	2	533.255317	1064.49608	2.3346	0.0012449	7.5589	0.0040308	9.8934	0.0052757	533.2611409077258	26.094	0.12068	26.094	26.046	26.167	0	1287	70	0.8449601	0.042397797	0.8449601	342.82034	0	17.201782						236	6	4	NaN	NaN	NaN	0.7718	1	11323	11323		13.003	0.95414	1	31842	+		17701	8819	10168	10466	14055	14055					-0.03358780188182209
MTESAGPDL	9	Unmodified	_MTESAGPDL_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4029741150999	1	920.402974	919.395698	2.1826	0.0020089	-2.0197	-0.0018589	0.16294	0.00014997	920.4030194100806	21.802	0.072226	21.788	21.715	21.788	-0.013895	366	25	1.4019053	0.014277697	1.4003859	284.97028	0	2.9022827						40	4	2	NaN	NaN	NaN	0.12945	1	6262	6262		31.561	3.7722	1	2785.4	+		17702	10602	10169	10467	14056	14056					-0.06722437241842272
MTESGMAR	8	Unmodified	_MTESGMAR_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.6940376758	2	441.694038	881.373522	1.2378	0.00054671	-8.8086	-0.0038907	-7.5708	-0.003344	441.6905374592489	35.239	0.072372	35.239	35.215	35.287	-4.1962E-05	1398	43	0.77658504	0.025929153	0.7750656	315.91376	0	10.547943						60	4	2	NaN	NaN	NaN	0.84562	1	5695	5695		2.1763	0.50597	1	3687.5			17703	3860	10170	10468	14057	14057					-0.07190940191242134
MTINMLNVFG	10	Unmodified	_MTINMLNVFG_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1139.5587632506	1	1139.55876	1138.55149	1.9531	0.0022257	-6.9646	-0.0079366	-5.0115	-0.0057109	1139.552791849123	32.949	0.19313	32.949	32.9	33.094	0	66	52	1.579413	0.030021429	1.579413	320.13977	0	6.085205						252	9	3	NaN	NaN	NaN	0.24484	1	14395	14395		31.675	2.7799	1	25220			17704	7012	10171	10469	14058	14058					-0.012246899920683063
MTLSETPMAF	10	Unmodified	_MTLSETPMAF_					0	0	0			REV__ENST00000443967.5_1_5:175717144-175717486:+|nuORF	REV__ENST00000443967.5_1_5:175717144-175717486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.511144356	1	1127.51114	1126.50387	1.4676	0.0016547	-6.3171	-0.0071227	-4.8496	-0.005468	1127.5037767661581	33.142	0.1689	33.142	33.118	33.287	0	75	61	1.5741152	0.035328627	1.5741152	319.1068	0	7.161865						185	8	3	NaN	NaN	NaN	0.53991	1	13947	13947		17.799	3.7574	1	12564	+		17705	12201	10172	10470	14059	14059					-0.05432388982922021
MTLTPDPQI	9	Unmodified	_MTLTPDPQI_					0	0	0			REV__ENST00000505306.5_1_17:48167535-48167679:+|nuORF	REV__ENST00000505306.5_1_17:48167535-48167679:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.5128589155	1	1015.51286	1014.50558	1.4502	0.0014727	-3.6197	-0.0036759	-2.1695	-0.0022032	1015.5087332983097	35.77	0.072281	35.77	35.746	35.819	0.00053024	210	55	1.4944444	0.03195119	1.4929249	303.36057	0	6.48584						87	4	2	NaN	NaN	NaN	0.35794	1	8975	8975		15.463	2.4598	1	7710.5	+		17706	12535	10173	10471	14060	14060					-0.0010901190264576144
MTPENGFWTM	10	Unmodified	_MTPENGFWTM_					0	0	0		ENST00000082468.11_1_6:26410172-26413917:+|nuORF;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	ENST00000082468.11_1_6:26410172-26413917:+|nuORF	ENST00000082468.11_1_6:26410172-26413917:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.2544593844001	2	607.254459	1212.49437	1.1498	0.00069823	8.514	0.0051701	9.6638	0.0058684	607.2594503128449	36.083	0.072266	36.084	36.036	36.108	0.0011024	1185	40	0.90755045	0.023888946	0.906031	367.64008	0	9.677185						66	4	2	NaN	NaN	NaN	0.74854	1	16108	16108		4.7291	1.1593	1	5836.3			17707	480	10174	10472	14061	14061					-0.10338157268415671
MTPQRDIFE	9	Unmodified	_MTPQRDIFE_					0	0	0			REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1136.5404706494999	1	1136.54047	1135.53319	1.0987	0.0012488	5.4715	0.0062186	6.5703	0.0074674	1136.5472882870217	29.955	0.21719	29.949	29.852	30.07	-0.0064106	66	67	1.579413	0.038853288	1.5778936	320.14993	0	7.875641						329	10	3	NaN	NaN	NaN	0.2345	1	13828	13828		23.118	5.3186	1	44358	+		17708	10015	10175	10473	14062	14062					-0.029151086424235473
MTQSLVTKSM	10	Unmodified	_MTQSLVTKSM_					0	0	0			REV__ENSG00000143105|ENST00000369771|KCNA10	REV__ENSG00000143105|ENST00000369771|KCNA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2857595128002	2	563.28576	1124.55697	1.9843	0.0011178	0.25481	0.00014353	2.2391	0.0012613	563.2865008686891	28.001	0.24129	28.001	27.905	28.146	0	1254	82	0.8652351	0.049701393	0.8652351	350.80685	0	20.151276						300	11	2	NaN	NaN	NaN	0.74182	1	13866	13866		5.1889	0	1	38915	+		17709	9858	10176	10474	14063	14063					-0.00033011200230248505
MTQSLVTKSM	10	Unmodified						0	0	0			REV__ENSG00000143105|ENST00000369771|KCNA10	REV__ENSG00000143105|ENST00000369771|KCNA10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.28576	1124.55697	1.9843	0.0011178	0.25481	0.00014353	2.2391	0.0012613	563.2865008686891	28.001	0.24129	28.001	27.905	28.146	0	1254	82	0.8652351	0.049701393	0.8652351	350.80685		20.151276	-0.079593	-0.0012315	0.00075972	NaN	5.1889	300	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38915	+		17710	9858	10176	10474							-0.00033011200230248505
MTQSLVTKSM	10	Unmodified						0	0	0			REV__ENSG00000143105|ENST00000369771|KCNA10	REV__ENSG00000143105|ENST00000369771|KCNA10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.28576	1124.55697	1.089	0.00061344	2.8515	0.0016062	3.9406	0.0022197	563.7878447169949	28.17	0.14482	28.161	28.161	28.305	-0.0089779	1254	88	0.8652351	0.053382993	0.86371565	350.80682		21.643951	0.079593	0.0016939	-0.00075972	NaN	5.1889	162	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15577	+		17711	9858	10176	10474							-0.00033011200230248505
MTQVASLGY	9	Unmodified	_MTQVASLGY_					0	0	0			REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4709941008001	1	969.470994	968.463718	1.6283	0.0015786	-4.2223	-0.0040934	-2.594	-0.0025148	969.467199057225	27.06	0.072453	27.06	27.036	27.109	0	345	37	1.4143922	0.02139604	1.4143922	287.29358	0	4.345978						57	4	2	NaN	NaN	NaN	0.49672	1	7557	7557		9.746	0.62279	1	4301.1	+		17712	10356	10177	10475	14064	14064					-0.02177567591161278
MTQVASLGY	9	Unmodified						0	0	0			REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	969.470994	968.463718	1.6283	0.0015786	-4.2223	-0.0040934	-2.594	-0.0025148	969.467199057225	27.06	0.072453	27.06	27.036	27.109	0	345	37	1.4143922	0.02139604	1.4143922	287.29358		4.345978	-0.0066295	0.00013273	-0.00013183	NaN	9.746	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4301.1	+		17713	10356	10177	10475							-0.02177567591161278
MTQVASLGY	9	Unmodified						0	0	0			REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	969.470994	968.463718	1.3803	0.0013382	-4.5102	-0.0043725	-3.1298	-0.0030343	969.4657872220621	27.084	0.096531	27.074	27.049	27.146	-0.010124	342	37	1.4161754	0.02139604	1.4146559	287.65576		4.345978	0.0066295	-0.00014631	0.00013183	NaN	9.746	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5491.6	+		17714	10356	10177	10475							-0.02177567591161278
MTSGGFGG	8	Unmodified	_MTSGGFGG_					0	0	0			REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF	REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.2923014537001	1	713.292301	712.285025	1.7255	0.0012308	5.2017	0.0037103	6.9272	0.0049411	713.2961997302671	25.394	0.16889	25.382	25.334	25.503	-0.012011	642	46	1.2369217	0.027033329	1.2354022	252.50934	0	5.5186615						121	8	2	NaN	NaN	NaN	0.84207	1	3399	3399		3.5732	1.9029	1	9306	+		17715	10432	10178	10476	14065	14065					-0.08262612439398254
MTSRTRVTW	9	Unmodified	_MTSRTRVTW_					0	0	0		nc|ENSG00000104341|Q86VI4|LAPTM4B	nc|ENSG00000104341|Q86VI4|LAPTM4B	nc|ENSG00000104341|Q86VI4|LAPTM4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2953074919001	2	569.295307	1136.57606	1.0057	0.00057253	-10.634	-0.006054	-9.6285	-0.0054814	569.2897569791943	26.625	0.16891	26.614	26.518	26.687	-0.010643	1218	103	0.8873258	0.06257683	0.8858064	359.7174	0	25.368317						377	8	4	NaN	NaN	NaN	0.13602	1	13870	13870		30.61	2.8213	1	52171			17716	7919	10179	10477	14066	14066					0.013237062056759896
MTSRTRVTW	9	Unmodified						0	0	0		nc|ENSG00000104341|Q86VI4|LAPTM4B	nc|ENSG00000104341|Q86VI4|LAPTM4B	nc|ENSG00000104341|Q86VI4|LAPTM4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.295307	1136.57606	1.9094	0.001087	-12.935	-0.0073636	-11.025	-0.0062766	569.2880737979137	26.577	0.28968	26.577	26.481	26.77	0	1224	115	0.883646	0.0699237	0.883646	358.22565		28.34671	-0.018651	-0.0016769	-0.0010802	NaN	30.61	502	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69448			17717	7919	10179	10477							0.013237062056759896
MTSSDVHP	8	Unmodified	_MTSSDVHP_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.3770937156	1	873.377094	872.369817	1.6396	0.001432	-6.9511	-0.006071	-5.3115	-0.004639	873.3710735304946	55.196	0.072262	55.196	55.196	55.268	0	453	52	1.3500742	0.030432343	1.3500742	274.65256	0	6.1910095						68	4	2	NaN	NaN	NaN	0.8439	1	5693	5693		3.1533	0	1	6386.7	+		17718	8835	10180	10478	14067	14067					-0.0714728669345277
MTSSDVHP	8	Unmodified						0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	873.377094	872.369817	1.6396	0.001432	-6.9511	-0.006071	-5.3115	-0.004639	873.3710735304946	55.196	0.072262	55.196	55.196	55.268	0	453	52	1.3500742	0.030432343	1.3500742	274.65256		6.1910095	-0.010657	-0.0005328	-0.00013525	NaN	3.1533	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6386.7	+		17719	8835	10180	10478							-0.0714728669345277
MTSSIHPFQP	10	Unmodified	_MTSSIHPFQP_					0	0	0			REV__ENSG00000168283|ENST00000376663|BMI1	REV__ENSG00000168283|ENST00000376663|BMI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.776416247	2	572.776416	1143.53828	2.118	0.0012132	-5.4722	-0.0031343	-3.3542	-0.0019212	572.7734588183866	23.079	0.072371	23.079	23.079	23.152	0	1212	112	0.8910048	0.06813884	0.8910048	361.1825	0	27.621094						155	4	2	NaN	NaN	NaN	0.5917	1	14571	14571		15.463	0	1	40192	+		17720	10505	10181	10479	14068	14068					-0.02774804779801343
MTSSIHPFQP	10	Unmodified						0	0	0			REV__ENSG00000168283|ENST00000376663|BMI1	REV__ENSG00000168283|ENST00000376663|BMI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.776416	1143.53828	2.118	0.0012132	-5.4722	-0.0031343	-3.3542	-0.0019212	572.7734588183866	23.079	0.072371	23.079	23.079	23.152	0	1212	112	0.8910048	0.06813884	0.8910048	361.1825		27.621094	-0.0051092	-0.0010795	0.00075972	NaN	15.463	155	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40192	+		17721	10505	10181	10479							-0.02774804779801343
MTSSIHPFQP	10	Unmodified						0	0	0			REV__ENSG00000168283|ENST00000376663|BMI1	REV__ENSG00000168283|ENST00000376663|BMI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.776416	1143.53828	1.3888	0.00079548	-4.1839	-0.0023964	-2.7951	-0.0016009	572.7739085718159	23.103	0.14459	23.09	23.041	23.186	-0.013294	1212	124	0.8910048	0.07546437	0.88948536	361.1825		30.590637	0.0051092	0.00039628	-0.00075972	NaN	15.463	298	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55620	+		17722	10505	10181	10479							-0.02774804779801343
MTTKTYDSVTD	11	Unmodified	_MTTKTYDSVTD_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2844680341	2	631.284468	1260.55438	1.3062	0.0008246	6.1221	0.0038648	7.4283	0.0046894	631.2882680194414	27.325	0.072405	27.315	27.315	27.387	-0.010124	1134	64	0.9387595	0.038519144	0.93724006	380.1194	0	15.597046						94	4	2	NaN	NaN	NaN	0.65755	1	17230	17230		10.244	0.63208	1	6452.5			17723	2024	10182	10480	14069	14069					-0.06547188124227432
MTVGAAGL	8	Unmodified	_MTVGAAGL_					0	0	0			REV__ENSG00000089101|ENST00000245957|CFAP61	REV__ENSG00000089101|ENST00000245957|CFAP61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3756371526	1	719.375637	718.368361	1.4421	0.0010374	-0.96859	-0.00069678	0.47353	0.00034065	719.3748213526972	19.564	0.216	19.564	19.468	19.684	0	600	55	1.2621325	0.032393098	1.2621325	257.6148	0	6.611786						201	10	2	NaN	NaN	NaN	0.76633	1	3564	3564		13.737	0	1	21016	+		17724	8198	10183	10481	14070	14070					-0.002088759915523042
MTVGAAGL	8	Unmodified						0	0	0			REV__ENSG00000089101|ENST00000245957|CFAP61	REV__ENSG00000089101|ENST00000245957|CFAP61	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.375637	718.368361	1.4421	0.0010374	-0.96859	-0.00069678	0.47353	0.00034065	719.3748213526972	19.564	0.216	19.564	19.468	19.684	0	600	55	1.2621325	0.032393098	1.2621325	257.6148		6.611786	0.019812	-0.00055695	0.00075972	NaN	13.737	201	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21016	+		17725	8198	10183	10481							-0.002088759915523042
MTVGAAGL	8	Unmodified						0	0	0			REV__ENSG00000089101|ENST00000245957|CFAP61	REV__ENSG00000089101|ENST00000245957|CFAP61	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.375637	718.368361	1.3491	0.00097051	0.96244	0.00069236	2.3115	0.0016629	719.3764918022437	19.539	0.2167	19.524	19.452	19.669	-0.014143	600	52	1.2621325	0.030591846	1.2606131	257.6148		6.2441406	-0.019812	0.00083219	-0.00075972	NaN	13.737	180	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18293	+		17726	8198	10183	10481							-0.002088759915523042
MTVPQPCA	8	Unmodified	_MTVPQPCA_					0	0	0		NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.3848216304	1	846.384822	845.377545	0.75485	0.0006389	0.53915	0.00045633	1.294	0.0010952	846.3855565637655	32.344	0.21717	32.341	32.292	32.51	-0.0037613	444	94	1.3554435	0.05550027	1.353924	275.88144	0	11.296295						460	10	3	NaN	NaN	NaN	0.69631	1	5194	5194		19.285	8.6798	1	111740			17727	8077	10184	10482	14071	14071					-0.05132850697543745
MTVPQPCA	8	Unmodified						0	0	0		NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	846.384822	845.377545	1.5593	0.0013197	0.52221	0.00044199	2.0815	0.0017617	846.3854963081837	32.345	0.26546	32.345	32.273	32.539	0	447	97	1.3536539	0.057299614	1.3536539	275.51718		11.662537	0.0024397	-8.4209E-06	-0.00013506	NaN	19.285	573	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114030			17728	8077	10184	10482							-0.05132850697543745
MTVPVSFSW	9	Unmodified	_MTVPVSFSW_					0	0	0		ENST00000217381.2_1_20:31996371-31996559:-|nuORF	ENST00000217381.2_1_20:31996371-31996559:-|nuORF	ENST00000217381.2_1_20:31996371-31996559:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5073796071	1	1053.50738	1052.5001	1.8375	0.0019358	2.8812	0.0030353	4.7187	0.0049712	1053.5115223198816	36.445	0.12048	36.446	36.422	36.543	0.0016785	102	40	1.5582114	0.022984266	1.556692	316.1516	0	4.663391						102	6	2	NaN	NaN	NaN	0.14301	1	10507	10507		29.598	1.8095	1	8579.6			17729	6230	10185	10483	14072	14072					-0.02404690694470446
MTVTMWRK	8	Unmodified	_MTVTMWRK_					0	0	0		ENST00000492359.6_1_12:9822319-9832812:+|nuORF;ENST00000290855.10_1_12:9822319-9833560:+|nuORF	ENST00000492359.6_1_12:9822319-9832812:+|nuORF	ENST00000492359.6_1_12:9822319-9832812:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.537968229	1	1052.53797	1051.53069	1.8984	0.0019982	-3.7301	-0.0039261	-1.8317	-0.0019279	1052.5359309778119	32.37	0.048248	32.37	32.345	32.394	0	117	58	1.5493695	0.03362453	1.5493695	314.3614	0	6.822296						63	3	2	NaN	NaN	NaN	0.80071	1	10689	10689		9.1232	0.83292	1	4465.8			17730	6385	10186	10484	14073	14073					0.0069876441893939045
MTVVSMPSDPV	11	Unmodified	_MTVVSMPSDPV_					0	0	0		ENST00000601333.1_1_19:39306127-39306256:-|nuORF	ENST00000601333.1_1_19:39306127-39306256:-|nuORF	ENST00000601333.1_1_19:39306127-39306256:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.18760369233325	3	388.187604	1161.54098	1.9833	0.00076991	-0.55957	-0.00021722	1.4238	0.00055269	388.18792963789787	18.05	0.144	18.036	17.94	18.084	-0.013786	1536	58	0.69119483	0.0353446	0.6896754	420.19775	0	21.48703						127	7	2	NaN	NaN	NaN	0.51407	1	14682	14682		12.872	0.5654	1	13502			17731	7768	10187	10485	14074	14074					-0.033327174371606816
MTWWCCLAMP	10	Unmodified	_MTWWCCLAMP_					0	0	0			REV__ENST00000498638.1_1_7:99753991-99754759:-|nuORF	REV__ENST00000498638.1_1_7:99753991-99754759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.50399275179996	3	414.503993	1240.49015	1.5604	0.00064679	-3.7051	-0.0015358	-2.1447	-0.00088899	414.8352736372039	19.274	0.072094	19.26	19.212	19.284	-0.014143	1416	28	0.76547134	0.016676903	0.7639519	465.00552	0	10.130798						74	4	3	NaN	NaN	NaN	0.772	1	16792	16792		0.9188	0	1	6290.9	+		17732	12511	10188	10486	14075	14075					-0.1204766128735173
MTYKAFVESQ	10	Unmodified	_MTYKAFVESQ_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.28935644675	2	602.289356	1202.56416	0.83015	0.00049999	5.178	0.0031186	6.0081	0.0036186	602.2925420396217	22.404	0.16853	22.39	22.342	22.511	-0.013733	1173	49	0.91489893	0.029387534	0.9133795	370.65134	0	11.905731						155	8	2	NaN	NaN	NaN	0.27719	1	15891	15891		28.896	8.3823	1	27024			17733	2542	10189	10487	14076	14076					-0.029019553281614208
MVAAAGVAGK	10	Unmodified	_MVAAAGVAGK_					0	0	0		ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.7443878371	2	437.744388	873.474223	1.6682	0.00073026	-2.1763	-0.00095268	-0.5081	-0.00022242	437.7440444355107	13.877	0.12001	13.877	13.853	13.973	0	1386	34	0.78399014	0.020360768	0.78399014	318.97034	0	8.283905						83	6	2	NaN	NaN	NaN	0.25724	1	5719	5719		30.61	14.193	1	7002.1			17734	6708	10190	10488	14077	14077					0.03242459853925084
MVAAAGVAGK	10	Unmodified	_MVAAAGVAGK_					0	0	0		ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	ENST00000377604.7_1_X:47004707-47006821:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.7443878371	2	437.744388	873.474223	1.4796	0.0006477	-1.5146	-0.00066301	-0.034965	-1.5306E-05	437.74393624854815	13.877	0.071883	13.866	13.842	13.914	-0.010672	1386	31	0.78399014	0.018508792	0.7824707	318.97034	0	7.5303955						52	4	2	NaN	NaN	NaN	0.47601	1	5581	5581		20.449	5.2733	1	4865.8			17735	6708	10190	10488	14078	14078					0.03242459853925084
MVALDGFI	8	Unmodified	_MVALDGFI_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4488020957002	1	865.448802	864.441526	0.88155	0.00076293	0.10574	9.1514E-05	0.98729	0.00085445	865.448762348724	30.366	0.19301	30.359	30.263	30.456	-0.0064106	387	67	1.389409	0.039297104	1.3878895	282.69482	0	7.9955444						169	9	2	NaN	NaN	NaN	0.72043	1	5448	5448		17.78	4.0433	1	22277			17736	5031	10191	10489	14079	14079					0.0038825273107931935
MVAMVEVQL	9	Unmodified	_MVAMVEVQL_					0	0	0		ENSG00000175938|ENST00000318663|ORAI3;ENSG00000160991|ENST00000495936|ORAI2;nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	ENSG00000175938|ENST00000318663|ORAI3;nc|ENSG00000276045|Q96D31-2|ORAI1	ENSG00000175938|ENST00000318663|ORAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2668384781501	2	510.266838	1018.51912	1.6555	0.00084477	-2.688	-0.0013716	-1.0324	-0.0005268	510.2657620609494	29.546	0.096518	29.546	29.522	29.618	0	1287	82	0.8449601	0.049782038	0.8449601	343.01797	0	20.209412						163	5	2	NaN	NaN	NaN	0.36492	1	9320	9320		15.175	9.7095	1	20320			17737	5005;6191	10192	10490	14080	14080					0.010605226049619887
MVAMVEVQL	9	Unmodified						0	0	0		ENSG00000175938|ENST00000318663|ORAI3;ENSG00000160991|ENST00000495936|ORAI2;nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	ENSG00000175938|ENST00000318663|ORAI3;nc|ENSG00000276045|Q96D31-2|ORAI1	ENSG00000175938|ENST00000318663|ORAI3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.266838	1018.51912	0.86729	0.00044255	-4.2086	-0.0021475	-3.3414	-0.001705	510.2647641792818	29.545	0.14478	29.538	29.514	29.659	-0.0070648	1278	79	0.85049206	0.047935665	0.8489726	345.26373		19.45987	-0.003949	-0.00074964	0.0020062	NaN	15.175	193	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25207			17738	5005;6191	10192	10490							0.010605226049619887
MVAMVEVQL	9	Oxidation (M)	_MVAM(Oxidation (M))VEVQL_		M(0.024)VAM(0.976)VEVQL		M(-16)VAM(16)VEVQL	0	0	1		ENSG00000175938|ENST00000318663|ORAI3;ENSG00000160991|ENST00000495936|ORAI2;nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	ENSG00000175938|ENST00000318663|ORAI3;nc|ENSG00000276045|Q96D31-2|ORAI1	ENSG00000175938|ENST00000318663|ORAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5213151118	1	1035.52132	1034.51404	1.807	0.0018712	-0.94566	-0.00097925	0.86133	0.00089193	1035.520816489647	26.167	0.14479	26.156	26.131	26.276	-0.011135	174	88	1.5157272	0.051386952	1.5142077	307.60098	0	10.428436						198	7	2	NaN	NaN	NaN	0.032764	1	9761	9761		55.494	21.055	2	25417			17739	5005;6191	10192	10491	14081	14081		525			-0.0018378125766957965
MVARGLLA	8	Unmodified	_MVARGLLA_					0	0	0		nc|ENSG00000288558|O95620-2|DUS4L;ENST00000485825.1_1_7:107215546-107218002:+|nuORF;ENSG00000105865|ENST00000265720|DUS4L	nc|ENSG00000288558|O95620-2|DUS4L	nc|ENSG00000288558|O95620-2|DUS4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.4916699634002	1	830.49167	829.484393	1.8972	0.0015756	6.4201	0.0053318	8.3173	0.0069075	830.4966530604327	27.688	0.072399	27.688	27.664	27.736	0	477	37	1.3357477	0.021501064	1.3357477	271.95596	0	4.377594						50	4	2	NaN	NaN	NaN	0.77489	1	5131	5131		12.588	1.0394	1	3475.3			17740	1570	10193	10492	14082	14082					0.06283067579170165
MVAWISKE	8	Unmodified	_MVAWISKE_					0	0	0		ENST00000546954.1_1_12:120882118-120882157:-|nuORF	ENST00000546954.1_1_12:120882118-120882157:-|nuORF	ENST00000546954.1_1_12:120882118-120882157:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.25204569370004	2	482.252046	962.489538	2.417	0.0011656	-2.4715	-0.0011919	-0.054522	-2.6294E-05	482.2517963356333	18.604	0.047958	18.604	18.604	18.652	0	1329	43	0.81912065	0.025858998	0.81912065	332.78622	0	10.505829						65	3	2	NaN	NaN	NaN	0.67593	1	7404	7404		20.555	2.5858	1	4761.8			17741	7527	10194	10493	14083	14083					0.006793266511181173
MVDDRLVTM	9	Oxidation (M)	_MVDDRLVTM(Oxidation (M))_		MVDDRLVTM(1)		M(-51)VDDRLVTM(51)	0	0	1		ENSG00000075785|ENST00000265062|RAB7A;ENST00000491681.1_1_3:128514210-128516981:+|nuORF	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2622844165	2	548.262284	1094.51002	1.9288	0.0010575	-2.2363	-0.0012261	-0.30748	-0.00016858	548.2613007303205	18.05	0.16802	18.036	17.964	18.132	-0.013786	1275	46	0.85233563	0.027650714	0.8508162	345.69165	0	11.21463						203	8	4	NaN	NaN	NaN	0.039271	1	12266	12266		51.467	34.883	2	23769			17742	844	10195	10494	14084	14084		88			-0.033458707513773334
MVDELVLLL	9	Unmodified	_MVDELVLLL_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.8041110539501	2	522.804111	1043.59367	0.52935	0.00027675	-2.3144	-0.00121	-1.7851	-0.00093325	522.8028933415234	38.324	0.14414	38.324	38.299	38.444	0	1254	49	0.8652351	0.029473364	0.8652351	351.13623	0	11.96109						116	7	2	NaN	NaN	NaN	0.20577	1	10372	10372		24.961	9.7856	1	9033.1			17743	5257	10196	10495	14085	14085					0.0736160868798379
MVDELVLLL	9	Unmodified	_MVDELVLLL_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.6009456413	1	1044.60095	1043.59367	1.7518	0.0018299	-1.152	-0.0012034	0.59982	0.00062657	1044.6002701549558	38.321	0.26444	38.325	38.253	38.517	0.0040245	87	85	1.5670487	0.049481153	1.5655292	317.97977	0	10.040527						630	12	4	NaN	NaN	NaN	0.02781	1	10167	10167		61.977	3.3776	1	127330			17744	5257	10196	10495	14086	14086					0.0736160868798379
MVDELVLLL	9	Oxidation (M)	_M(Oxidation (M))VDELVLLL_		M(1)VDELVLLL		M(53)VDELVLLL	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8015683650001	2	530.801568	1059.58858	1.5155	0.00080445	-3.813	-0.002024	-2.2975	-0.0012195	530.799636695052	36.181	0.19289	36.181	36.133	36.326	0	1245	49	0.87076044	0.029463828	0.87076044	353.3091	0	11.9548645						233	9	3	NaN	NaN	NaN	0.03623	1	11083	11083		52.758	13.84	1	37134			17745	5257	10196	10496	14087	14087		545			0.06117304825352221
MVDELVLLL	9	Oxidation (M)	_M(Oxidation (M))VDELVLLL_		M(1)VDELVLLL		M(53)VDELVLLL	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5958602634	1	1060.59586	1059.58858	1.8205	0.0019308	-0.62009	-0.00065767	1.2004	0.0012731	1060.5957027170518	36.157	0.19296	36.157	36.109	36.302	0	75	88	1.5741152	0.051234603	1.5741152	319.35074	0	10.394318						452	9	4	NaN	NaN	NaN	0.03623	1	11084	11084		52.758	8.4559	1	82216			17746	5257	10196	10496	14088	14088		545			0.06117304825352221
MVDELVLLL	9	Oxidation (M)	_M(Oxidation (M))VDELVLLL_		M(1)VDELVLLL		M(62)VDELVLLL	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5958602634	1	1060.59586	1059.58858	1.667	0.001768	-1.3356	-0.0014166	0.33133	0.00035141	1060.5951981437015	36.155	0.19283	36.157	36.108	36.301	0.0011024	75	94	1.5741152	0.054773927	1.5725957	319.35074	0	11.112335						469	9	4	NaN	NaN	NaN	0.02781	1	10846	10846		61.977	23.059	1	82326			17747	5257	10196	10496	14089	14089		545			0.06117304825352221
MVDENTWTNLL	11	Unmodified	_MVDENTWTNLL_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3161025135001	2	668.316103	1334.61765	0.91831	0.00061372	-1.9421	-0.0012979	-1.0238	-0.0006842	668.3155953217208	31.646	0.21723	31.646	31.597	31.815	0	1104	64	0.9570911	0.038485885	0.9570911	387.30905	0	15.574219						233	10	3	NaN	NaN	NaN	0.15564	1	19321	19321		34.454	2.7785	1	24737			17748	4296	10197	10497	14090	14090					-0.03627202616303293
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.7627775555	2	486.762778	971.511002	2.2162	0.0010787	-2.1249	-0.0010343	0.091281	4.4432E-05	486.7621809330337	17.789	0.1439	17.789	17.765	17.909	0	1338	61	0.81357855	0.03695345	0.81357855	330.49136	0	15.01123						258	7	3	NaN	NaN	NaN	0.084037	1	7654	7654		38.131	20.35	1	41629			17749	3003	10198	10498	14091	14091					0.024107116798290917
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.7627775555	2	486.762778	971.511002	1.9039	0.00092672	-1.9993	-0.00097319	-0.095466	-4.6469E-05	486.76217912343026	17.81	0.11991	17.796	17.772	17.892	-0.013784	1338	58	0.81357855	0.03510773	0.8120591	330.49136	0	14.261444						248	6	4	NaN	NaN	NaN	0.077759	1	7508	7508		39.039	7.4781	1	38870			17750	3003	10198	10498	14092	14092					0.024107116798290917
MVDGTLLLL	9	Unmodified	_MVDGTLLLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;HLA-E|p.S11L|1|0.53|ENSG00000204592|chr6:30489563-30489563|C/T|missense_variant	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5590808266003	1	974.559081	973.551804	2.3105	0.0022517	-0.76601	-0.00074652	1.5445	0.0015052	974.5587266565751	34.493	0.24128	34.493	34.421	34.662	0	177	175	1.5139546	0.10298681	1.5139546	307.49426	0	20.917297						915	11	5	NaN	NaN	NaN	0.03623	1	7713	7713		52.758	0	1	356430			17751	5898	10199	10499	14093	14093					0.06397052999466268
MVDIPIVL	8	Unmodified	_MVDIPIVL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.5270524167	1	899.527052	898.519776	1.804	0.0016228	-0.9456	-0.00085059	0.85841	0.00077216	899.5260197966993	34.445	0.16892	34.445	34.396	34.565	0	321	82	1.4286518	0.04812324	1.4286518	290.50665	0	9.785522						304	8	3	NaN	NaN	NaN	0.13697	1	6042	6042		56.971	18.363	1	56673			17752	2723	10200	10500	14094	14094					0.06645685316300387
MVDIPIVL	8	Unmodified	_MVDIPIVL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.5270524167	1	899.527052	898.519776	1.3978	0.0012573	0.9912	0.00089161	2.389	0.0021489	899.5267937207137	34.443	0.2651	34.443	34.298	34.563	-0.0006485	321	97	1.4286518	0.05703795	1.4271324	290.50665	0	11.598297						301	12	2	NaN	NaN	NaN	0.15767	1	5929	5929		53.324	17.287	1	57262			17753	2723	10200	10500	14095	14095					0.06645685316300387
MVDLTSVTL	9	Unmodified	_MVDLTSVTL_					0	0	0		nc|ENSG00000198690|Q9Y2M0-2|FAN1;ENSG00000198690|ENST00000362065|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5176099424001	1	978.51761	977.510333	1.7663	0.0017283	-0.030857	-3.0194E-05	1.7354	0.0016981	978.5179538125769	29.594	0.072407	29.594	29.57	29.642	0	225	73	1.4855686	0.042624116	1.4855686	301.71182	0	8.656769						133	4	2	NaN	NaN	NaN	0.062072	1	7820	7820		41.785	12.186	1	31427			17754	5792	10201	10501	14096	14096					0.020678722401157756
MVDPSVHFDF	10	Unmodified	_MVDPSVHFDF_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-5|OTOF	REV__nc|ENSG00000115155|Q9HC10-5|OTOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.2684240394001	2	597.268424	1192.5223	0.76535	0.00045712	-5.4065	-0.0032291	-4.6411	-0.002772	597.2663991348503	27.204	0.14479	27.194	27.122	27.267	-0.010126	1188	64	0.90571284	0.038602352	0.9041934	366.96487	0	15.640411						245	7	4	NaN	NaN	NaN	0.27719	1	15598	15598		28.896	5.778	1	50418	+		17755	9179	10202	10502	14097	14097					-0.06626511016679615
MVDSNEISF	9	Unmodified	_MVDSNEISF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1;ENST00000481468.1_1_3:158402378-158402495:+|nuORF;ENST00000477721.1_1_3:158399847-158408148:+|nuORF	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.4557379670998	1	1041.45574	1040.44846	1.463	0.0015237	1.8853	0.0019634	3.3483	0.0034871	1041.4586545375234	24.671	0.048227	24.671	24.647	24.695	0	249	46	1.4713576	0.026661277	1.4713576	298.57422	0	5.4102173						59	3	2	NaN	NaN	NaN	0.16939	1	10217	10217		27.296	3.9618	1	4401.4			17756	7980	10203	10503	14098	14098					-0.0701447917904261
MVEAHRSAL	9	Unmodified	_MVEAHRSAL_					0	0	0			REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF	REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.26347604725	2	507.263476	1012.5124	1.915	0.00097142	5.5519	0.0028163	7.4669	0.0037877	507.2669911898934	17.141	0.19208	17.141	17.045	17.237	0	1308	55	0.83204526	0.03322214	0.83204526	337.8018	0	13.4878235						178	9	3	NaN	NaN	NaN	0.33629	1	9077	9077		16.584	0.16752	1	18471	+		17757	12488	10204	10504	14099	14099					0.0066434576857545835
MVEAHRSAL	9	Unmodified						0	0	0			REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF	REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.263476	1012.5124	1.915	0.00097142	5.5519	0.0028163	7.4669	0.0037877	507.2669911898934	17.141	0.19208	17.141	17.045	17.237	0	1308	55	0.83204526	0.03322214	0.83204526	337.8018		13.4878235	-0.0035199	0.00018554	-0.00016307	NaN	16.584	178	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18471	+		17758	12488	10204	10504							0.0066434576857545835
MVEELEKAL	9	Unmodified	_MVEELEKAL_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2810000984	2	531.281	1060.54745	2.0892	0.00111	-2.2391	-0.0011896	-0.14984	-7.9607E-05	531.2802993205494	22.694	0.14473	22.694	22.645	22.79	0	1284	73	0.8468043	0.044248343	0.8468043	343.58496	0	17.95346						299	7	5	NaN	NaN	NaN	0.015447	1	11130	11130		77.761	24.981	1	75079			17759	686	10205	10505	14100	14100					0.01959543785869755
MVEELEKAL	9	Unmodified	_MVEELEKAL_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2810000984	2	531.281	1060.54745	1.0137	0.00053858	0.097977	5.2053E-05	1.1117	0.00059064	531.2802833150948	22.693	0.26518	22.68	22.655	22.921	-0.01354	1287	70	0.8449601	0.042402327	0.84344065	342.8367	0	17.204437						326	12	4	NaN	NaN	NaN	0.013959	1	10882	10882		80.901	4.1616	1	81231			17760	686	10205	10505	14101	14101					0.01959543785869755
MVEELEKAL	9	Oxidation (M)	_M(Oxidation (M))VEELEKAL_		M(1)VEELEKAL		M(44)VEELEKAL	0	0	1		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.27845740945	2	539.278457	1076.54236	1.3908	0.00075001	-0.97129	-0.00052379	0.41948	0.00022622	539.2776947652047	20.068	0.24074	20.054	19.934	20.174	-0.014141	1287	82	0.8449601	0.04976058	0.84344065	342.7714	0	20.186127						269	11	4	NaN	NaN	NaN	0.057383	1	11514	11514		43.776	6.4732	1	50599			17761	686	10205	10506	14102	14102		72			0.0071523992323818675
MVELYRNF	8	Unmodified	_MVELYRNF_					0	0	0			REV__nc|ENSG00000119383|Q15257-4|PTPA	REV__nc|ENSG00000119383|Q15257-4|PTPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5291776817	1	1071.52918	1070.5219	1.4334	0.001536	1.3243	0.0014191	2.7578	0.002955	1071.5298247624737	28.918	0.072426	28.909	28.885	28.958	-0.0083504	114	46	1.5511382	0.026531577	1.5496187	314.64795	0	5.3819275						87	4	2	NaN	NaN	NaN	0.83582	1	11284	11284		4.4131	0.44458	1	5135.3	+		17762	9287	10206	10507	14103	14103					-0.010538859458847583
MVETHDPIL	9	Unmodified	_MVETHDPIL_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7655172097001	2	527.765517	1053.51648	1.6124	0.00085097	-1.2302	-0.00064924	0.38223	0.00020173	527.7650060077492	20.405	0.24038	20.405	20.333	20.573	0	1254	82	0.8652351	0.04976058	0.8652351	351.09317	0	20.191742						427	11	6	NaN	NaN	NaN	0.043119	1	10789	10789		49.833	13.246	1	119260			17763	717	10207	10508	14104	14104					-0.008136095283589384
MVETHDPIL	9	Unmodified	_MVETHDPIL_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7655172097001	2	527.765517	1053.51648	1.2664	0.00066838	-1.0499	-0.00055411	0.21651	0.00011427	527.7655400959592	20.429	0.16861	20.415	20.295	20.463	-0.014141	1254	73	0.8652351	0.044233978	0.86371565	351.09317	0	17.949158						539	8	7	NaN	NaN	NaN	0.011942	1	10566	10566		87.021	31.527	1	128020			17764	717	10207	10508	14105	14105					-0.008136095283589384
MVETHDPIL	9	Oxidation (M)	_M(Oxidation (M))VETHDPIL_		M(1)VETHDPIL		M(77)VETHDPIL	0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.N1017Mfs*20|1|0.19|ENSG00000067369|chr15:43441559-43441559|T/-|frameshift_variant;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.76297452075	2	535.762975	1069.5114	2.2762	0.0012195	-2.9537	-0.0015825	-0.67752	-0.00036299	535.7616011971996	19.012	0.19196	19.012	18.916	19.108	0	1266	58	0.85786515	0.03500533	0.85786515	348.03543	0	14.20163						292	9	4	NaN	NaN	NaN	0.016254	1	11536	11536		76.739	47.141	1	84971			17765	717	10207	10509	14106	14106		74			-0.020579133909905067
MVFGGDYIF	9	Unmodified	_MVFGGDYIF_					0	0	0		nc|ENSG00000116704|Q9NTN3-2|SLC35D1;ENSG00000116704|ENST00000235345|SLC35D1	nc|ENSG00000116704|Q9NTN3-2|SLC35D1	nc|ENSG00000116704|Q9NTN3-2|SLC35D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4808305056	1	1048.48083	1047.47355	1.6119	0.00169	4.7448	0.0049748	6.3567	0.0066649	1048.485631975904	32.925	0.16901	32.925	32.9	33.069	0	138	121	1.5369828	0.0708673	1.5369828	311.8638	0	14.379456						338	8	3	NaN	NaN	NaN	0.11467	1	10514	10514		33.698	10.364	1	36097			17766	2100	10208	10510	14107	14107					-0.04828379585796938
MVFHTGTQR	9	Unmodified	_MVFHTGTQR_					0	0	0		ENST00000530653.5_1_6:26365433-26368244:+|nuORF;chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000532865.5_2_6:26365529-26368244:+|nuORF;ENST00000527422.5_1_6:26365529-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.5150425328	3	359.515043	1075.5233	1.2025	0.00043232	-1.0189	-0.0003663	0.18364	6.602E-05	359.51412933606906	12.964	0.14413	12.964	12.94	13.084	0	1464	37	0.73579943	0.022273242	0.73579943	447.733	0	13.553253						106	7	2	NaN	NaN	NaN	0.27608	1	11786	11786		18.233	5.9268	1	10750			17767	149	10209	10511	14108	14108					-0.011442518571357141
MVFHTGTQR	9	Unmodified	_MVFHTGTQR_					0	0	0		ENST00000530653.5_1_6:26365433-26368244:+|nuORF;chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000532865.5_2_6:26365529-26368244:+|nuORF;ENST00000527422.5_1_6:26365529-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7689255659001	2	538.768926	1075.5233	1.3103	0.00070597	-0.40602	-0.00021875	0.90432	0.00048722	538.7681723762739	12.988	0.14413	12.988	12.94	13.084	0	1236	37	0.876284	0.022093058	0.876284	355.48267	0	8.962494						96	7	2	NaN	NaN	NaN	0.032826	1	11787	11787		55.413	34.858	1	9896.5			17768	149	10209	10511	14109	14109					-0.011442518571357141
MVFHTGTQR	9	Unmodified	_MVFHTGTQR_					0	0	0		ENST00000530653.5_1_6:26365433-26368244:+|nuORF;chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000532865.5_2_6:26365529-26368244:+|nuORF;ENST00000527422.5_1_6:26365529-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7689255659001	2	538.768926	1075.5233	1.1166	0.00060159	-1.7259	-0.00092986	-0.60929	-0.00032827	538.7684270949158	13.038	0.11982	13.028	12.98	13.1	-0.00947	1236	34	0.876284	0.020248711	0.8747646	355.4827	0	8.214294						103	6	3	NaN	NaN	NaN	0.37272	1	11474	11474		14.854	7.2664	1	8850.6			17769	149	10209	10511	14110	14110					-0.011442518571357141
MVFHTGTQR	9	Unmodified	_MVFHTGTQR_					0	0	0		ENST00000530653.5_1_6:26365433-26368244:+|nuORF;chr6:26365423-26367990|128|10.02|0.37|4.75|+|0|None,BTN3A2|1;ENST00000532865.5_2_6:26365529-26368244:+|nuORF;ENST00000527422.5_1_6:26365529-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	ENST00000530653.5_1_6:26365433-26368244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.5150425328	3	359.515043	1075.5233	1.5501	0.0005573	-1.6985	-0.00061064	-0.14837	-5.3341E-05	359.5140057077761	13.062	0.16773	13.052	12.957	13.124	-0.00947	1461	34	0.7376554	0.020416021	0.73613596	448.86237	0	12.423126						116	8	2	NaN	NaN	NaN	0.14787	1	11475	11475		25.681	11.733	1	9899.2			17770	149	10209	10511	14111	14111					-0.011442518571357141
MVGAAFGL	8	Unmodified	_MVGAAFGL_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3963725947002	1	765.396373	764.389096	1.6502	0.0012631	6.9073	0.0052868	8.5575	0.0065499	765.4017095437431	30.655	0.12066	30.649	30.601	30.722	-0.0057545	510	40	1.316029	0.023316503	1.3145095	268.31277	0	4.753784						73	6	2	NaN	NaN	NaN	0.84876	1	4200	4200		0.39566	0	1	5174	+		17771	9562	10210	10512	14112	14112					-0.0025228561187304877
MVGAAFGL	8	Unmodified						0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	765.396373	764.389096	1.3317	0.0010193	9.5583	0.0073159	10.89	0.0083352	765.4037631315518	30.656	0.072392	30.656	30.632	30.704	0	507	37	1.3178225	0.021526337	1.3178225	268.67844		4.3888245	0.0034033	0.00083205	0.0016565	NaN	0.39566	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4079.4	+		17772	9562	10210	10512							-0.0025228561187304877
MVGAAFGL	8	Unmodified						0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	765.396373	764.389096	1.6502	0.0012631	6.9073	0.0052868	8.5575	0.0065499	765.4017095437431	30.655	0.12066	30.649	30.601	30.722	-0.0057545	510	40	1.316029	0.023316503	1.3145095	268.31277		4.753784	-0.0034033	-0.001197	-0.0016565	NaN	0.39566	73	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5174	+		17773	9562	10210	10512							-0.0025228561187304877
MVGAKAGP	8	Unmodified	_MVGAKAGP_					0	0	0		nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21|SERINC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3916215678001	1	730.391622	729.384345	1.6664	0.0012172	8.149	0.005952	9.8155	0.0071692	730.3974118070777	21.561	0.1204	21.547	21.523	21.643	-0.013895	585	46	1.2711272	0.026978374	1.2696078	259.37735	0	5.5050354						103	6	2	NaN	NaN	NaN	0.84876	1	3673	3673		0.39566	0	1	8982.7			17774	8000	10211	10513	14113	14113					0.008828302453594006
MVGGAAGK	8	Unmodified	_MVGGAAGK_					0	0	0			REV__ENSG00000145087|ENST00000471454|STXBP5L	REV__ENSG00000145087|ENST00000471454|STXBP5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.75363	0.00052027	1.6607	0.0011465	2.4144	0.0016668	690.3641333932547	31.355	0.2413	31.35	31.253	31.495	-0.0050716	750	100	1.1719203	0.059670806	1.1704009	239.38985	0	12.189041						311	11	2	NaN	NaN	NaN	0.84727	1	2931	2931		1.2418	0	1	28912	+		17775	9920	10212	10514	14114	14114					-0.004057427887460108
MVHHCTIH	8	Unmodified	_MVHHCTIH_					0	0	0		nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.2258393307	2	489.225839	976.437126	1.5865	0.00077617	4.4971	0.0022001	6.0836	0.0029763	489.22808507163	17.186	0.14394	17.172	17.1	17.244	-0.013569	1347	34	0.8080346	0.020332098	0.8065152	328.2162	0	8.258728						132	7	3	NaN	NaN	NaN	0.74229	1	7626	7626		16.417	4.8682	1	9937.9			17776	1697	10213	10515	14115	14115					-0.05203534963493439
MVHHCTIH	8	Unmodified						0	0	0		nc|ENSG00000108823|Q16586-2|SGCA;ENSG00000108823|ENST00000262018|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	nc|ENSG00000108823|Q16586-2|SGCA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	489.225839	976.437126	1.9085	0.0009337	6.7123	0.0032838	8.6208	0.0042175	489.2282895548135	17.165	0.14406	17.165	17.093	17.237	0	1347	34	0.8080346	0.020332098	0.8080346	328.21616		8.2586975	-0.003522	0.0014782	0.00075972	NaN	16.417	104	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9417.1			17777	1697	10213	10515							-0.05203534963493439
MVIEKEQSL	9	Unmodified	_MVIEKEQSL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.78644961705	2	538.78645	1075.55835	2.0058	0.0010807	-2.2401	-0.001207	-0.23434	-0.00012626	538.7848782286375	17.501	0.19176	17.501	17.453	17.645	0	1245	76	0.87076044	0.046044707	0.87076044	353.2418	0	18.678955						147	9	3	NaN	NaN	NaN	0.064504	1	11797	11797		40.957	9.3958	1	9745.3			17778	2322	10214	10516	14116	14116					0.023589461601659423
MVIEKEQSL	9	Unmodified	_MVIEKEQSL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.78644961705	2	538.78645	1075.55835	1.914	0.0010312	-1.9374	-0.0010438	-0.023346	-1.2578E-05	538.785709350951	17.522	0.072048	17.508	17.484	17.556	-0.013567	1236	37	0.876284	0.022090733	0.8747646	355.48254	0	8.961548						69	4	3	NaN	NaN	NaN	0.41766	1	11489	11489		13.003	0.95414	1	5479			17779	2322	10214	10516	14117	14117					0.023589461601659423
MVIEYIGTI	9	Unmodified	_MVIEYIGTI_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5539954487	1	1038.554	1037.54672	2.0299	0.0021082	0.67762	0.00070375	2.7075	0.0028119	1038.55437093861	26.046	0.096546	26.046	26.046	26.143	0	96	67	1.5617468	0.038898587	1.5617468	316.928	0	7.8937683						97	5	2	NaN	NaN	NaN	0.20577	1	10107	10107		24.961	3.1899	1	14448			17780	605	10215	10517	14118	14118					0.029447491368500778
MVIEYIGTI	9	Unmodified						0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1038.554	1037.54672	1.9999	0.002077	0.02332	2.4219E-05	2.0232	0.0021012	1038.5533786052024	26.046	0.096535	26.035	26.035	26.131	-0.011135	99	61	1.5599792	0.035362363	1.5584598	316.5693		7.176117	-0.005678	-0.00050046	-0.0016435	NaN	24.961	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15166			17781	605	10215	10517							0.029447491368500778
MVIGAGAG	8	Unmodified	_MVIGAGAG_					0	0	0		ENST00000505521.1_1_5:177019227-177019656:+|nuORF	ENST00000505521.1_1_5:177019227-177019656:+|nuORF	ENST00000505521.1_1_5:177019227-177019656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021001	1	675.349422	674.342146	1.4491	0.00097863	4.7625	0.0032163	6.2116	0.004195	675.3530509331415	27.905	0.19302	27.905	27.76	27.953	0	744	121	1.1755381	0.07235539	1.1755381	240.23288	0	14.78656						488	9	2	NaN	NaN	NaN	0.84651	1	2714	2714		1.6704	0	1	52228			17782	7327	10216	10518	14119	14119					-0.008051451630194606
MVISEKEAM	9	2 Oxidation (M)	_M(Oxidation (M))VISEKEAM(Oxidation (M))_		M(1)VISEKEAM(1)		M(41)VISEKEAM(41)	0	0	2		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2488426902501	2	535.248843	1068.48313	1.6071	0.00086018	-2.4806	-0.0013277	-0.87354	-0.00046756	535.2484831357801	13.06	0.1681	13.06	13.012	13.18	0	1305	58	0.83389086	0.035062134	0.83389086	338.3132	0	14.2248535						237	8	3	NaN	NaN	NaN	0.064504	1	11476	11476		40.957	7.2586	1	25868			17783	2029	10217	10519	14120	14120		228;229			-0.04836979362562488
MVISEKEAM	9	2 Oxidation (M)	_M(Oxidation (M))VISEKEAM(Oxidation (M))_		M(1)VISEKEAM(1)		M(56)VISEKEAM(56)	0	0	2		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2488426902501	2	535.248843	1068.48313	0.79891	0.00042761	-0.93563	-0.00050079	-0.13672	-7.3179E-05	535.2488297881794	13.062	0.16777	13.052	12.98	13.148	-0.00947	1305	52	0.83389086	0.031371415	0.8323714	338.3132	0	12.727509						231	8	3	NaN	NaN	NaN	0.032689	1	11203	11203		55.592	14.132	1	25260			17784	2029	10217	10519	14121	14121		228;229			-0.04836979362562488
MVISEKEAM	9	Oxidation (M)	_MVISEKEAM(Oxidation (M))_		MVISEKEAM(1)		M(-46)VISEKEAM(46)	0	0	1		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2513853792	2	527.251385	1052.48822	0.86556	0.00045637	-0.44756	-0.00023598	0.41799	0.00022039	527.251170358635	14.836	0.19218	14.824	14.8	14.992	-0.011737	1308	52	0.83204526	0.031371415	0.8305259	337.62973	0	12.72998						260	9	4	NaN	NaN	NaN	0.052553	1	10504	10504		45.827	19.712	2	40361			17785	2029	10217	10520	14122	14122		228;229			-0.035926754999763943
MVKCLMKM	8	Unmodified	_MVKCLMKM_					0	0	0			REV__ENST00000495126.1_1_1:157765863-157765914:-|nuORF	REV__ENST00000495126.1_1_1:157765863-157765914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.4908833813001	1	983.490883	982.483607	1.8938	0.0018626	0.744	0.00073172	2.6378	0.0025943	983.4922295717781	24.791	0.096495	24.779	24.755	24.851	-0.012394	288	61	1.4482387	0.03559947	1.4467193	294.10962	0	7.229553						97	5	2	NaN	NaN	NaN	0.84727	1	7795	7795		1.2418	0.16982	1	6123.8	+		17786	12494	10218	10521	14123	14123					-0.008335544480701174
MVKQNNIIP	9	Unmodified	_MVKQNNIIP_					0	0	0		ENST00000423405.1_1:144606371-144612374:+|nuORF;ENST00000446541.1_1:144604445-144606981:+|nuORF;ENST00000437451.1_1:144598756-144607180:+|nuORF;ENST00000429694.1_1:144604445-144614919:+|nuORF;ENST00000421407.1_1:144598537-144606923:+|nuORF	ENST00000423405.1_1:144606371-144612374:+|nuORF	ENST00000423405.1_1:144606371-144612374:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7971516891	2	528.797152	1055.57975	1.4005	0.00074059	2.3437	0.0012393	3.7442	0.0019799	529.3002016205344	29.184	0.12066	29.184	29.112	29.232	0	1248	91	0.8689189	0.055280566	0.8689189	352.57904	0	22.43103						230	6	3	NaN	NaN	NaN	0.66196	1	10908	10908		2.4615	0.28518	1	18663			17787	6914	10219	10522	14124	14124					0.05418375979525081
MVKQNNIIP	9	Unmodified						0	0	0		ENST00000423405.1_1:144606371-144612374:+|nuORF;ENST00000446541.1_1:144604445-144606981:+|nuORF;ENST00000437451.1_1:144598756-144607180:+|nuORF;ENST00000429694.1_1:144604445-144614919:+|nuORF;ENST00000421407.1_1:144598537-144606923:+|nuORF	ENST00000423405.1_1:144606371-144612374:+|nuORF	ENST00000423405.1_1:144606371-144612374:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.797152	1055.57975	0.77881	0.00041183	2.5413	0.0013438	3.3201	0.0017557	529.2990831640957	29.183	0.14482	29.175	29.079	29.224	-0.0077209	1260	82	0.8615505	0.04974979	0.8600311	349.5892		20.186829	-0.0042565	0.00010087	-0.0044439	NaN	2.4615	272	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18992			17788	6914	10219	10522							0.05418375979525081
MVLICALMG	9	Unmodified	_MVLICALMG_					0	0	0		nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4871782119002	1	950.487178	949.479902	0.92524	0.00087943	-4.7946	-0.0045572	-3.8694	-0.0036778	950.4828375713037	33.697	0.1448	33.697	33.624	33.769	0	330	52	1.4233059	0.030299783	1.4233059	289.1852	0	6.15625						135	7	2	NaN	NaN	NaN	0.48931	1	7070	7070		10.052	0.30557	1	10587			17789	3183	10220	10523	14125	14125					0.0031409904972861113
MVLTEEPLL	9	Unmodified	_MVLTEEPLL_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.564560135	1	1044.56456	1043.55728	2.2122	0.0023107	-0.80321	-0.00083901	1.4089	0.0014717	1044.563897889536	30.077	0.16899	30.077	30.053	30.222	0	129	106	1.5422925	0.061972737	1.5422925	312.95645	0	12.575287						318	8	4	NaN	NaN	NaN	1.0979E-25	1	10363	10363		167.34	114.58	1	60412			17790	2168	10221	10524	14126	14126					0.03724731791248814
MVLTEEPLL	9	Unmodified	_MVLTEEPLL_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.564560135	1	1044.56456	1043.55728	1.1845	0.0012373	-1.3042	-0.0013623	-0.11969	-0.00012502	1044.5633201414892	30.076	0.14481	30.07	30.045	30.19	-0.0064087	129	73	1.5422925	0.042475224	1.540773	312.95645	0	8.618927						325	7	4	NaN	NaN	NaN	0.00011853	1	10159	10159		121.78	65.835	1	58351			17791	2168	10221	10524	14127	14127					0.03724731791248814
MVLTEEPLL	9	Oxidation (M)	_M(Oxidation (M))VLTEEPLL_		M(1)VLTEEPLL		M(78)VLTEEPLL	0	0	1		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5594747571	1	1060.55947	1059.5522	1.8332	0.0019442	0.70724	0.00075007	2.5404	0.0026942	1060.5607910377319	27.688	0.072399	27.688	27.664	27.736	0	105	67	1.5564433	0.03890264	1.5564433	315.7657	0	7.892456						170	4	3	NaN	NaN	NaN	0.014943	1	11071	11071		78.398	39.48	1	18860			17792	2168	10221	10525	14128	14128		251			0.024804279286399833
MVLTEEPLL	9	Oxidation (M)	_M(Oxidation (M))VLTEEPLL_		M(1)VLTEEPLL		M(140)VLTEEPLL	0	0	1		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5594747571	1	1060.55947	1059.5522	1.2303	0.0013048	1.1411	0.0012102	2.3714	0.002515	1060.5605976393786	27.711	0.096502	27.702	27.677	27.774	-0.009552	108	82	1.5546752	0.04775679	1.5531558	315.40695	0	9.688751						187	5	3	NaN	NaN	NaN	1.433E-07	1	10835	10835		136.23	91.929	1	19899			17793	2168	10221	10525	14129	14129		251			0.024804279286399833
MVNVYQNGL	9	Unmodified	_MVNVYQNGL_					0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2578593531001	2	519.257859	1036.50117	1.6942	0.00087971	-8.0611	-0.0041858	-6.367	-0.0033061	519.2535675838604	17.546	0.23984	17.532	17.484	17.724	-0.013567	1302	85	0.8357362	0.0516454	0.8342168	339.19504	0	20.960999						286	11	4	NaN	NaN	NaN	0.56671	1	9848	9848		6.8632	1.1691	1	37056	+		17794	9712	10222	10526	14130	14130					-0.015624763255345897
MVNVYQNGL	9	Unmodified						0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	519.257859	1036.50117	2.0334	0.0010559	-10.215	-0.005304	-8.1812	-0.0042482	519.2521798350283	17.525	0.19175	17.525	17.477	17.669	0	1302	88	0.8357362	0.053498566	0.8357362	339.19504		21.713135	-0.0036033	-0.0013058	0.00075972	NaN	6.8632	272	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37164	+		17795	9712	10222	10526							-0.015624763255345897
MVNVYQNGL	9	Unmodified						0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.257859	1036.50117	1.6942	0.00087971	-8.0611	-0.0041858	-6.367	-0.0033061	519.2535675838604	17.546	0.23984	17.532	17.484	17.724	-0.013567	1302	85	0.8357362	0.0516454	0.8342168	339.19504		20.960999	0.0036033	0.00093062	-0.00075972	NaN	6.8632	286	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37056	+		17796	9712	10222	10526							-0.015624763255345897
MVPAEMPQ	8	Unmodified	_MVPAEMPQ_					0	0	0			REV__ENSG00000168003|ENST00000338663|SLC3A2	REV__ENSG00000168003|ENST00000338663|SLC3A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4110363809001	1	902.411036	901.40376	2.1944	0.0019802	-1.1079	-0.00099982	1.0864	0.0009804	902.4103406166591	25.95	0.072403	25.95	25.901	25.974	0	339	85	1.4179583	0.04996133	1.4179583	288.3183	0	10.158813						137	4	2	NaN	NaN	NaN	0.49126	1	6099	6099		31.561	4.8295	1	13708	+		17797	8209	10223	10527	14131	14131					-0.050885815260471645
MVPQPITQLI	10	Unmodified	_MVPQPITQLI_					0	0	0			REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3282846420001	2	570.328285	1138.64202	1.6354	0.00093274	-11.084	-0.0063214	-9.4484	-0.0053887	570.3216717583254	26.722	0.09655	26.722	26.65	26.746	0	1173	55	0.91489893	0.03306806	0.91489893	370.88736	0	13.405334						132	5	3	NaN	NaN	NaN	0.37681	1	14410	14410		24.562	1.2276	1	29603	+		17798	13532	10224	10528	14132	14132					0.07824102327867877
MVQEHDEPIL	10	Unmodified	_MVQEHDEPIL_					0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.7922632764501	2	605.792263	1209.56997	1.0693	0.00064776	-2.1308	-0.0012908	-1.0615	-0.00064305	605.7906626516591	19.731	0.096199	19.717	19.669	19.765	-0.014141	1188	46	0.90571284	0.027564168	0.9041934	366.9057	0	11.166321						149	5	3	NaN	NaN	NaN	0.13684	1	16043	16043		40.957	26.532	1	15200			17799	5495	10225	10529	14133	14133					-0.02642856816510175
MVQEHDEPIL	10	Unmodified						0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.792263	1209.56997	1.5198	0.00092067	-3.2187	-0.0019498	-1.6989	-0.0010292	605.7914082194723	19.708	0.024006	19.708	19.708	19.732	0	1194	28	0.902037	0.016545653	0.902037	365.41663		6.7026978	-0.0044314	-0.00095319	-0.0010782	NaN	40.957	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6214.3			17800	5495	10225	10529							-0.02642856816510175
MVQHRLED	8	Unmodified	_MVQHRLED_					0	0	0			REV__ENSG00000185262|ENST00000327490|UBALD2	REV__ENSG00000185262|ENST00000327490|UBALD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2531083262	2	514.253108	1026.49166	2.0157	0.0010366	-0.29681	-0.00015264	1.7189	0.00088395	514.2518906424453	27.664	0.048246	27.664	27.639	27.688	0	1308	31	0.83204526	0.018456757	0.83204526	337.7401	0	7.4918823						40	3	2	NaN	NaN	NaN	0.84455	1	9625	9625		2.7852	0	1	3223.9	+		17801	10955	10226	10530	14134	14134					-0.020522446110817327
MVQHRLED	8	Unmodified						0	0	0			REV__ENSG00000185262|ENST00000327490|UBALD2	REV__ENSG00000185262|ENST00000327490|UBALD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.253108	1026.49166	2.0157	0.0010366	-0.29681	-0.00015264	1.7189	0.00088395	514.2518906424453	27.664	0.048246	27.664	27.639	27.688	0	1308	31	0.83204526	0.018456757	0.83204526	337.7401		7.4918823	0	0	0	NaN	2.7852	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3223.9	+		17802	10955	10226	10530							-0.020522446110817327
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2420719031501	2	557.242072	1112.46959	1.9402	0.0010811	-1.384	-0.00077123	0.55614	0.0003099	557.241307751343	22.019	0.26525	22.019	21.97	22.236	0	1221	76	0.885486	0.046014845	0.885486	359.06476	0	18.659027						607	12	5	NaN	NaN	NaN	0.043119	1	13359	13359		49.833	23.718	1	250230			17803	3594	10227	10531	14135	14135					-0.08214513870143492
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1113.4768673397	1	1113.47687	1112.46959	2.3884	0.0026594	-0.72488	-0.00080714	1.6635	0.0018523	1113.4761992270558	22.019	0.33762	22.019	21.97	22.308	0	117	94	1.5493695	0.054843545	1.5493695	314.13828	0	11.119659						656	15	5	NaN	NaN	NaN	0.00015011	1	13360	13360		119.86	61.623	1	183210			17804	3594	10227	10531	14136	14136					-0.08214513870143492
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2420719031501	2	557.242072	1112.46959	1.5725	0.00087628	-1.2158	-0.00067749	0.35675	0.0001988	557.241690590508	22.018	0.19268	22.004	21.956	22.149	-0.013895	1224	97	0.883646	0.05891496	0.88212657	358.31863	0	23.890015						593	9	5	NaN	NaN	NaN	0.016254	1	12982	12982		76.739	40.153	1	225950			17805	3594	10227	10531	14137	14137					-0.08214513870143492
MVSDEYEQL	9	Unmodified	_MVSDEYEQL_					0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1113.4768673397	1	1113.47687	1112.46959	1.4467	0.0016109	-0.51953	-0.00057848	0.92716	0.0010324	1113.4769797537967	22.018	0.28919	22.004	21.956	22.245	-0.013895	117	91	1.5493695	0.05307722	1.54785	314.13828	0	10.761536						634	13	5	NaN	NaN	NaN	3.7692E-08	1	12983	12983		140.15	90.185	1	185690			17806	3594	10227	10531	14138	14138					-0.08214513870143492
MVSDEYEQL	9	Unmodified						0	0	0		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.242072	1112.46959	1.4943	0.00083268	0.28665	0.00015973	1.7809	0.00099241	557.2436025498791	22.211	0.048264	22.197	22.197	22.246	-0.013731	1230	40	0.8799654	0.02391994	0.878446	356.82614		9.699554	0.089403	0.0017002	-0.00352	NaN	49.833	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5250.6			17807	3594	10227	10531							-0.08214513870143492
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(180)VSDEYEQL	0	0	1		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1129.4717819618	1	1129.47178	1128.46451	2.1069	0.0023797	-1.1355	-0.0012825	0.97147	0.0010972	1129.470675880346	20.646	0.28917	20.646	20.597	20.887	0	120	100	1.5476005	0.058400393	1.5476005	313.7251	0	11.838776						559	13	5	NaN	NaN	NaN	1.9911E-35	1	14015	14015		180.25	127.63	1	104510			17808	3594	10227	10532	14139	14139		404			-0.0945881773277506
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(50)VSDEYEQL	0	0	1		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2395292142	2	565.239529	1128.46451	1.4599	0.00082518	-1.2307	-0.00069567	0.22912	0.00012951	565.2388069733605	20.622	0.28908	20.608	20.559	20.849	-0.014088	1233	85	0.87812483	0.051550567	0.8766054	356.018	0	20.900116						707	13	4	NaN	NaN	NaN	0.043119	1	13574	13574		49.833	27.998	1	273120			17809	3594	10227	10532	14140	14140		404			-0.0945881773277506
MVSDEYEQL	9	Oxidation (M)	_M(Oxidation (M))VSDEYEQL_		M(1)VSDEYEQL		M(170)VSDEYEQL	0	0	1		ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENSG00000165496|ENST00000298283|RPL10L	ENSG00000165496|ENST00000298283|RPL10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.4717819618	1	1129.47178	1128.46451	1.0639	0.0012016	0.39783	0.00044934	1.4617	0.001651	1129.4726597132974	20.646	0.2891	20.632	20.584	20.873	-0.014086	117	88	1.5493695	0.051316142	1.54785	314.08368	0	10.402649						536	13	5	NaN	NaN	NaN	1.1577E-25	1	13575	13575		166.69	105.71	1	103600			17810	3594	10227	10532	14141	14141		404			-0.0945881773277506
MVSDVDLSF	9	Unmodified	_MVSDVDLSF_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4655743719002	1	1012.46557	1011.4583	1.3818	0.0013991	2.6465	0.0026794	4.0283	0.0040785	1012.4690132997652	28.145	0.096577	28.137	28.112	28.209	-0.0089798	222	112	1.4873441	0.06572282	1.4858247	301.93146	0	13.341736						219	5	4	NaN	NaN	NaN	0.043119	1	8850	8850		49.833	0	1	21368			17811	705	10228	10533	14142	14142					-0.046972911736247625
MVSISSPVL	9	Unmodified	_MVSISSPVL_					0	0	0		ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF	ENST00000480730.5_1_6:33272736-33281818:-|nuORF	ENST00000480730.5_1_6:33272736-33281818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5121306340001	1	932.512131	931.504854	1.5543	0.0014494	-3.3935	-0.0031645	-1.8393	-0.0017151	932.5096738476215	27.398	0.0483	27.398	27.374	27.422	0	327	55	1.425088	0.032073617	1.425088	289.62717	0	6.518463						116	3	3	NaN	NaN	NaN	0.021105	1	6637	6637		70.6	28.815	1	13549			17812	6038	10229	10534	14143	14143					0.03636193448301128
MVSPEPASL	9	Unmodified	_MVSPEPASL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4600950635	1	930.460095	929.452819	2.0502	0.0019076	0.39823	0.00037053	2.4484	0.0022781	930.4603625954537	21.946	0.12048	21.946	21.898	22.019	0	351	61	1.4108255	0.035675287	1.4108255	286.73773	0	7.2506714						153	6	2	NaN	NaN	NaN	0.011942	1	6584	6584		87.021	37.188	1	22465			17813	5440	10230	10535	14144	14144					-0.014729699654594697
MVSPEPASL	9	Unmodified	_MVSPEPASL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4600950635	1	930.460095	929.452819	1.1109	0.0010337	0.71886	0.00066887	1.8298	0.0017025	930.4610747862008	21.946	0.12047	21.932	21.884	22.004	-0.013895	351	58	1.4108255	0.033886075	1.409306	286.73773	0	6.8870544						149	6	2	NaN	NaN	NaN	0.01452	1	6453	6453		79.199	23.705	1	22216			17814	5440	10230	10535	14145	14145					-0.014729699654594697
MVSPEPASL	9	Oxidation (M)	_M(Oxidation (M))VSPEPASL_		M(1)VSPEPASL		M(77)VSPEPASL	0	0	1		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4550096856001	1	946.45501	945.447733	1.8137	0.0017166	0.0203	1.9213E-05	1.834	0.0017358	946.4552151504929	19.924	0.12027	19.924	19.876	19.997	0	315	82	1.4322147	0.048118114	1.4322147	291.01303	0	9.777161						216	6	3	NaN	NaN	NaN	0.016254	1	6952	6952		76.739	50.008	1	16641			17815	5440	10230	10536	14146	14146		565			-0.027172738280683006
MVSPEPASL	9	Oxidation (M)	_M(Oxidation (M))VSPEPASL_		M(1)VSPEPASL		M(55)VSPEPASL	0	0	1		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4550096856001	1	946.45501	945.447733	1.5975	0.001512	-0.19158	-0.00018132	1.4059	0.0013306	946.454856632306	19.924	0.096313	19.909	19.885	19.982	-0.014141	315	88	1.4322147	0.051687837	1.4306953	291.01303	0	10.502502						185	5	3	NaN	NaN	NaN	0.032764	1	6820	6820		55.494	30.533	1	13577			17816	5440	10230	10536	14147	14147		565			-0.027172738280683006
MVSRNENAQ	9	Unmodified	_MVSRNENAQ_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.4840184030998	1	1048.48402	1047.47674	1.2316	0.0012913	-0.55724	-0.00058426	0.67432	0.00070701	1048.4845643854187	32.924	0.12067	32.921	32.897	33.018	-0.0024757	135	115	1.5387528	0.06731677	1.5372335	312.22296	0	13.658997						231	6	2	NaN	NaN	NaN	0.38313	1	10304	10304		14.425	1.4222	1	32762			17817	1005	10231	10537	14148	14148					-0.04509736479099047
MVSTEPLAL	9	Unmodified	_MVSTEPLAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5070452561	1	960.507045	959.499769	1.5765	0.0015142	-0.51841	-0.00049794	1.0581	0.0010163	960.5061014225703	26.601	0.1931	26.601	26.553	26.746	0	288	97	1.4482387	0.056910753	1.4482387	294.20706	0	11.56131						387	9	2	NaN	NaN	NaN	0.094712	1	7326	7326		36.586	11.625	1	65629			17818	4223	10232	10538	14149	14149					0.018398895856762465
MVSTEPLAL	9	Unmodified	_MVSTEPLAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5070452561	1	960.507045	959.499769	1.3612	0.0013074	-0.25218	-0.00024222	1.109	0.0010652	960.5066923075208	26.625	0.14477	26.614	26.566	26.711	-0.010643	285	112	1.4500183	0.065820575	1.4484988	294.56857	0	13.371338						369	7	2	NaN	NaN	NaN	0.00011853	1	7179	7179		121.78	65.835	1	61979			17819	4223	10232	10538	14150	14150					0.018398895856762465
MVSTEPLAL	9	Oxidation (M)	_M(Oxidation (M))VSTEPLAL_		M(1)VSTEPLAL		M(42)VSTEPLAL	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5019598782001	1	976.50196	975.494683	1.9872	0.0019405	-1.4674	-0.0014329	0.51985	0.00050763	976.5008481196328	25.129	0.21717	25.129	25.057	25.274	0	258	55	1.4660252	0.03199196	1.4660252	297.75125	0	6.497589						265	10	3	NaN	NaN	NaN	0.062072	1	7764	7764		41.785	19.658	1	35776			17820	4223	10232	10539	14151	14151		454			0.005955857230674155
MVSTEPLAL	9	Oxidation (M)	_M(Oxidation (M))VSTEPLAL_		M(1)VSTEPLAL		M(85)VSTEPLAL	0	0	1		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5019598782001	1	976.50196	975.494683	1.8874	0.0018431	-0.64315	-0.00062804	1.2443	0.001215	976.5020044145142	25.153	0.16887	25.141	25.069	25.238	-0.012011	255	55	1.4678029	0.03199196	1.4662834	298.11227	0	6.497589						249	8	3	NaN	NaN	NaN	0.012648	1	7606	7606		84.879	37.839	1	34086			17821	4223	10232	10539	14152	14152		454			0.005955857230674155
MVTCTVYAI	9	Unmodified	_MVTCTVYAI_					0	0	0		ENST00000341617.7_1_7:126079175-126341814:-|nuORF;nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000113262|ENST00000517717|GRM6;nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8;nc|ENSG00000196277|Q14831-3|GRM7;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000124493|ENST00000538487|GRM4;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	ENST00000341617.7_1_7:126079175-126341814:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4842013239999	1	1000.4842	999.476925	2.1637	0.0021648	6.0266	0.0060296	8.1904	0.0081943	1000.4906985147958	25.419	0.048241	25.407	25.382	25.431	-0.012011	246	160	1.4731345	0.094213605	1.4716152	299.0951	0	19.128479						219	3	3	NaN	NaN	NaN	0.29681	1	8377	8377		19.118	1.3193	1	89435			17822	1906	10233	10540	14153	14153					-0.02283452803453656
MVTDDFVV	8	Unmodified	_MVTDDFVV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.433545962	1	925.433546	924.426269	2.0167	0.0018663	0.23587	0.00021828	2.2526	0.0020846	925.4341531560239	27.302	0.24136	27.302	27.253	27.495	0	357	169	1.407258	0.099965334	1.407258	286.03537	0	20.318665						700	11	5	NaN	NaN	NaN	0.0253	1	6492	6492		94.648	58.611	1	268750			17823	6201	10234	10541	14154	14154					-0.03896658856785962
MVTDDFVV	8	Unmodified	_MVTDDFVV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	925.433545962	1	925.433546	924.426269	1.1347	0.0010501	0.90393	0.00083653	2.0387	0.0018866	925.4344165442652	27.301	0.28957	27.291	27.242	27.532	-0.010126	354	151	1.4090419	0.089292765	1.4075224	286.39795	0	18.149414						494	13	2	NaN	NaN	NaN	0.0253	1	6366	6366		94.648	50.401	1	238780			17824	6201	10234	10541	14155	14155					-0.03896658856785962
MVTDDFVV	8	Oxidation (M)	_M(Oxidation (M))VTDDFVV_		M(1)VTDDFVV		M(59)VTDDFVV	0	0	1		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.4284605841001	1	941.428461	940.421184	2.1177	0.0019936	0.57921	0.00054529	2.6969	0.0025389	941.4295489631905	25.395	0.21716	25.395	25.346	25.564	0	339	121	1.4179583	0.071358204	1.4179583	288.13834	0	14.500458						586	10	3	NaN	NaN	NaN	0.12449	1	6823	6823		59.445	35.595	1	199820			17825	6201	10234	10542	14156	14156		630			-0.05140962719394793
MVTDDFVV	8	Oxidation (M)	_M(Oxidation (M))VTDDFVV_		M(1)VTDDFVV		M(59)VTDDFVV	0	0	1		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4284605841001	1	941.428461	940.421184	2.4816	0.0023362	0.66294	0.00062411	3.1445	0.0029603	941.4294212731919	25.394	0.26544	25.382	25.31	25.575	-0.012011	333	115	1.4215236	0.06776142	1.4200041	288.86282	0	13.769562						724	12	4	NaN	NaN	NaN	0.12449	1	6683	6683		59.445	35.595	1	205240			17826	6201	10234	10542	14157	14157		630			-0.05140962719394793
MVTSLEESL	9	Unmodified	_MVTSLEESL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4917891224001	1	1008.49179	1007.48451	1.8265	0.001842	-0.60248	-0.0006076	1.224	0.0012344	1008.4914984296488	24.985	0.21715	24.985	24.96	25.178	0	219	115	1.4891195	0.06750989	1.4891195	302.3079	0	13.705231						359	10	4	NaN	NaN	NaN	4.945700000000001E-19	1	8875	8875		165.99	74.564	1	69491			17827	547	10235	10543	14158	14158					-0.01893022002161615
MVTSLEESL	9	Unmodified	_MVTSLEESL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4917891224001	1	1008.49179	1007.48451	1.7418	0.0017566	-0.27366	-0.00027598	1.4682	0.0014806	1008.4919052765815	24.984	0.21713	24.972	24.924	25.141	-0.012392	219	91	1.4891195	0.053280234	1.4876001	302.3079	0	10.816467						350	10	3	NaN	NaN	NaN	1.5841000000000002E-35	1	8705	8705		182.61	84.566	1	62848			17828	547	10235	10543	14159	14159					-0.01893022002161615
MVVAEFLSL	9	Unmodified	_MVVAEFLSL_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000587410.1_1_18:77132833-77134205:+|nuORF;ENST00000588921.1_3_18:77132616-77137380:+|nuORF	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5434307624001	1	1008.54343	1007.53615	1.2902	0.0013012	-1.763	-0.001778	-0.47275	-0.00047679	1008.5425423503544	34.855	0.096497	34.855	34.806	34.903	0	153	94	1.5281296	0.054930925	1.5281296	310.22717	0	11.15155						265	5	3	NaN	NaN	NaN	0.062072	1	8889	8889		41.785	12.186	1	27722			17829	4474	10236	10544	14160	14160					0.03268766482403862
MVVAEFLSL	9	Unmodified	_MVVAEFLSL_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000587410.1_1_18:77132833-77134205:+|nuORF;ENST00000588921.1_3_18:77132616-77137380:+|nuORF	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5434307624001	1	1008.54343	1007.53615	1.4512	0.0014636	-0.61283	-0.00061807	0.83838	0.00084554	1008.5425013896864	34.853	0.16869	34.853	34.732	34.901	-0.0006485	147	103	1.5316714	0.060249925	1.530152	310.9462	0	12.231415						270	8	2	NaN	NaN	NaN	0.032764	1	8723	8723		55.494	26.827	1	31860			17830	4474	10236	10544	14161	14161					0.03268766482403862
MVVDIVQEL	9	Unmodified	_MVVDIVQEL_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2835427873501	2	523.283543	1044.55253	0.7334	0.00038378	-1.0381	-0.00054324	-0.30473	-0.00015946	523.2831166571981	31.066	0.072412	31.066	31.042	31.115	0	1284	43	0.8468043	0.025817096	0.8468043	343.6524	0	10.477142						113	4	3	NaN	NaN	NaN	0.041983	1	10409	10409		50.315	10.856	1	24348			17831	4051	10237	10545	14162	14162					0.032038476485013234
MVVDIVQEL	9	Unmodified	_MVVDIVQEL_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5598091081001	1	1045.55981	1044.55253	1.3397	0.0014007	-0.85814	-0.00089723	0.48157	0.00050351	1045.559499799131	31.066	0.19309	31.066	31.018	31.211	0	162	109	1.5228153	0.06378722	1.5228153	309.0004	0	12.943329						393	9	4	NaN	NaN	NaN	0.024221	1	10411	10411		66.656	27.198	1	82223			17832	4051	10237	10545	14163	14163					0.032038476485013234
MVVDIVQEL	9	Unmodified	_MVVDIVQEL_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2835427873501	2	523.283543	1044.55253	1.1268	0.00058963	-2.7317	-0.0014294	-1.6049	-0.00083981	523.2818033509155	31.065	0.072418	31.06	31.012	31.084	-0.0050716	1281	43	0.84864825	0.025814295	0.8471288	344.40073	0	10.476013						127	4	3	NaN	NaN	NaN	0.074859	1	10197	10197		39.459	7.006	1	34598			17833	4051	10237	10545	14164	14164					0.032038476485013234
MVVDIVQEL	9	Unmodified	_MVVDIVQEL_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5598091081001	1	1045.55981	1044.55253	1.403	0.0014669	-1.0554	-0.0011035	0.34758	0.00036341	1045.5590071214995	31.065	0.16893	31.06	31.012	31.181	-0.0050716	156	91	1.5263584	0.053127885	1.5248389	309.7193	0	10.780365						379	8	4	NaN	NaN	NaN	0.014046	1	10199	10199		80.639	33.157	1	82664			17834	4051	10237	10545	14165	14165					0.032038476485013234
MVVDIVQEL	9	Unmodified						0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.283543	1044.55253	1.7904	0.0009369	-5.6111	-0.0029362	-3.8206	-0.0019993	523.2817439985704	30.752	0.096485	30.746	30.698	30.794	-0.0057545	1257	34	0.86339295	0.020266235	0.8618735	350.38446		8.224487	-0.16026	-0.004392	0.0075346	NaN	50.315	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3256.8			17835	4051	10237	10545							0.032038476485013234
MVVDIVQEL	9	Oxidation (M)	_M(Oxidation (M))VVDIVQEL_		M(1)VVDIVQEL		M(42)VVDIVQEL	0	0	1		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2810000984001	2	531.281	1060.54745	1.6281	0.00086496	-5.1522	-0.0027373	-3.5242	-0.0018723	531.2792537817768	28.798	0.072365	28.798	28.75	28.822	0	1281	91	0.84864825	0.055304408	0.84864825	344.33316	0	22.439362						164	4	3	NaN	NaN	NaN	0.060816	1	11127	11127		42.318	18.983	1	20263			17836	4051	10237	10546	14166	14166		435			0.019595437858924925
MVVDIVQEL	9	Oxidation (M)	_M(Oxidation (M))VVDIVQEL_		M(1)VVDIVQEL		M(88)VVDIVQEL	0	0	1		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5547237302	1	1061.55472	1060.54745	1.901	0.002018	-0.40717	-0.00043223	1.4938	0.0015857	1061.5543640270782	28.798	0.12066	28.798	28.75	28.87	0	144	88	1.533442	0.05134332	1.533442	311.09552	0	10.416229						318	6	3	NaN	NaN	NaN	0.011693	1	11132	11132		87.778	37.463	1	61511			17837	4051	10237	10546	14167	14167		435			0.019595437858924925
MVVDIVQEL	9	Oxidation (M)	_M(Oxidation (M))VVDIVQEL_		M(1)VVDIVQEL		M(58)VVDIVQEL	0	0	1		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5547237302	1	1061.55472	1060.54745	1.3082	0.0013888	-0.77003	-0.00081743	0.5382	0.00057133	1061.5536616076463	28.797	0.19307	28.789	28.74	28.933	-0.0083504	147	97	1.5316714	0.05665171	1.530152	310.7363	0	11.493164						250	9	2	NaN	NaN	NaN	0.030696	1	10881	10881		58.2	16.745	1	58560			17838	4051	10237	10546	14168	14168		435			0.019595437858924925
MVVHFHEVL	9	Unmodified	_MVVHFHEVL_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7918693459501	2	555.791869	1109.56919	1.0558	0.00058681	-1.8396	-0.0010224	-0.78375	-0.0004356	555.7908386095562	20.838	0.096451	20.838	20.814	20.911	0	1170	37	0.91673553	0.022038221	0.91673553	371.74832	0	8.936829						106	5	3	NaN	NaN	NaN	0.078597	1	13257	13257		38.918	23.905	1	14100			17839	1009	10238	10547	14169	14169					0.018783933251143026
MVVHFHEVL	9	Unmodified						0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.791869	1109.56919	1.0026	0.00055726	0.74509	0.00041411	1.7477	0.00097137	555.7924710804018	20.983	0.16852	20.969	20.897	21.065	-0.014088	1170	58	0.91673553	0.034907043	0.9152161	371.74832		14.155273	0.065323	0.001964	-0.00075972	NaN	38.918	150	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14005			17840	1009	10238	10547							0.018783933251143026
MVVHFHEVL	9	Oxidation (M)	_M(Oxidation (M))VVHFHEVL_		M(1)VVHFHEVL		M(44)VVHFHEVL	0	0	1		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7893266570001	2	563.789327	1125.5641	1.5066	0.00084938	-0.34587	-0.000195	1.1607	0.00065438	563.7893834315255	18.986	0.19218	18.972	18.924	19.116	-0.014059	1170	64	0.91673553	0.03858155	0.9152161	371.6835	0	15.642609						157	9	2	NaN	NaN	NaN	0.056143	1	13476	13476		44.302	23.747	1	19721			17841	1009	10238	10548	14170	14170		112			0.006340894624827342
MVVKIIDVL	9	Unmodified	_MVVKIIDVL_					0	0	0		LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant;ENSG00000174106|ENST00000308330|LEMD3	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3224709826001	2	515.322471	1028.63039	1.7774	0.00091592	-1.9663	-0.0010133	-0.18894	-9.7366E-05	515.3215625463796	28.774	0.072365	28.774	28.75	28.822	0	1242	40	0.87260187	0.02393806	0.87260187	354.19293	0	9.716583						102	4	4	NaN	NaN	NaN	0.12866	1	9734	9734		31.675	5.5605	1	14283			17842	4926	10239	10549	14171	14171					0.1172190530453463
MVVKIIDVL	9	Unmodified	_MVVKIIDVL_					0	0	0		LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant;ENSG00000174106|ENST00000308330|LEMD3	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	LEMD3|p.R678Q|1|0.29|ENSG00000174106|chr12:65240145-65240145|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.3224709826001	2	515.322471	1028.63039	1.0174	0.00052427	-0.61204	-0.0003154	0.40532	0.00020887	515.3221699187067	28.797	0.16892	28.789	28.74	28.909	-0.0083504	1245	37	0.87076044	0.022095501	0.869241	353.4455	0	8.968628						109	8	3	NaN	NaN	NaN	0.40649	1	9535	9535		13.463	2.8581	1	13378			17843	4926	10239	10549	14172	14172					0.1172190530453463
MVVPDFSEL	9	Unmodified	_MVVPDFSEL_					0	0	0		ENSG00000105726|ENST00000357324|ATP13A1;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF	ENSG00000105726|ENST00000357324|ATP13A1	ENSG00000105726|ENST00000357324|ATP13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5019598782	1	1036.50196	1035.49468	0.97348	0.001009	2.4661	0.0025562	3.4396	0.0035652	1036.5033207406468	31.258	0.14483	31.253	31.181	31.326	-0.0050716	159	130	1.5245869	0.0761863	1.5230675	309.3951	0	15.461029						394	7	3	NaN	NaN	NaN	0.18779	1	9799	9799		26.115	6.8302	1	53460			17844	1563	10240	10550	14173	14173					-0.021644142769218888
MVVPDFSEL	9	Oxidation (M)	_M(Oxidation (M))VVPDFSEL_		M(1)VVPDFSEL		M(59)VVPDFSEL	0	0	1		ENSG00000105726|ENST00000357324|ATP13A1;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000474955.5_1_19:19767512-19770537:-|nuORF	ENSG00000105726|ENST00000357324|ATP13A1	ENSG00000105726|ENST00000357324|ATP13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4968745003	1	1052.49687	1051.4896	2.0713	0.0021801	-3.1682	-0.0033345	-1.0968	-0.0011544	1052.4943398044566	28.483	0.096508	28.475	28.475	28.572	-0.0083504	225	46	1.4855686	0.02662456	1.4840492	301.4166	0	5.402008						55	5	2	NaN	NaN	NaN	0.030391	1	10460	10460		58.599	24.901	1	3256.1			17845	1563	10240	10551	14174	14174		182			-0.0340871813953072
MWGWLWTE	8	Unmodified	_MWGWLWTE_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7496701802501	2	554.74967	1107.48479	1.1629	0.00064511	-7.3799	-0.004094	-6.217	-0.0034489	555.2471319462976	34.443	0.14463	34.443	34.37	34.515	-0.0006485	1242	52	0.87260187	0.031306982	0.8710824	353.85974	0	12.695709						150	7	3	NaN	NaN	NaN	0.82797	1	12783	12783		5.4659	2.2542	1	13265			17846	3453	10241	10552	14175	14175					-0.06465557491651452
MWIIRHTLF	9	Unmodified	_MWIIRHTLF_					0	0	0		ENST00000557380.5_1_14:50318303-50318570:-|nuORF	ENST00000557380.5_1_14:50318303-50318570:-|nuORF	ENST00000557380.5_1_14:50318303-50318570:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.22683295593333	3	406.226833	1215.65867	1.3341	0.00054194	-5.1363	-0.0020865	-3.8022	-0.0015446	406.22485230737374	22.501	0.048189	22.501	22.477	22.525	0	1428	34	0.7580582	0.020391703	0.7580582	460.60556	0	12.390259						105	3	4	NaN	NaN	NaN	0.54912	1	16881	16881		7.5876	1.1577	1	14736			17847	7577	10242	10553	14176	14176					0.05946648004464805
MWKVSALLF	9	Unmodified	_MWKVSALLF_					0	0	0		ENSG00000162493|ENST00000621990|PDPN;nc|ENSG00000162493|Q86YL7-4|PDPN;nc|ENSG00000162493|Q86YL7-3|PDPN	ENSG00000162493|ENST00000621990|PDPN	ENSG00000162493|ENST00000621990|PDPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.8069880939	2	547.806988	1093.59942	0.61393	0.00033632	-5.6351	-0.003087	-5.0212	-0.0027506	547.8059419698504	31.139	0.14478	31.139	31.115	31.259	0	1212	58	0.8910048	0.034948587	0.8910048	361.37894	0	14.174652						161	7	3	NaN	NaN	NaN	0.51576	1	12572	12572		8.962	5.3922	1	16851			17848	4138	10243	10554	14177	14177					0.05636751990277844
MWRAYRQRLN	10	Unmodified	_MWRAYRQRLN_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3671297643001	2	697.36713	1392.71971	0.55732	0.00038866	4.0646	0.0028345	4.622	0.0032232	697.3690335103109	33.6	0.072308	33.6	33.576	33.648	0	1047	28	0.99186665	0.016456664	0.99186665	401.21008	0	6.6567383						75	4	3	NaN	NaN	NaN	0.72631	1	20005	20005		6.2502	0.55606	1	4924.1	+		17849	8635	10244	10555	14178	14178					0.03905553036634046
MWRAYRQRLN	10	Unmodified						0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	697.36713	1392.71971	0.55732	0.00038866	4.0646	0.0028345	4.622	0.0032232	697.3690335103109	33.6	0.072308	33.6	33.576	33.648	0	1047	28	0.99186665	0.016456664	0.99186665	401.21008		6.6567383	0	0	0	NaN	6.2502	75	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4924.1	+		17850	8635	10244	10555							0.03905553036634046
MWRQTWDS	8	Unmodified	_MWRQTWDS_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2452832941001	2	555.245283	1108.47601	0.96797	0.00053746	-3.745	-0.0020794	-2.777	-0.0015419	555.7440256159769	34.106	0.072403	34.105	34.08	34.153	-0.0012474	1071	142	0.977233	0.085968256	0.97571355	396.28564	0	34.861694						303	4	3	NaN	NaN	NaN	0.84887	1	12832	12832		0.32989	0	1	24619			17851	7593;5637	10245	10556	14179	14179					-0.07388531128117393
MYADPNFVRTF	11	Unmodified	_MYADPNFVRTF_					0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000115904|ENST00000402219|SOS1	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8213550669	2	680.821355	1359.62816	1.6435	0.0011189	-3.3752	-0.0022979	-1.7317	-0.001179	680.8191486082022	25.033	0.096508	25.033	25.009	25.105	0	1092	58	0.9644182	0.03479433	0.9644182	390.20053	0	14.077667						190	5	4	NaN	NaN	NaN	0.10311	1	19672	19672		39.34	24.165	1	23166			17852	1252	10246	10557	14180	14180					-0.03727175171252384
MYADPNFVRTF	11	Unmodified	_MYADPNFVRTF_					0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000115904|ENST00000402219|SOS1	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8213550669	2	680.821355	1359.62816	1.4848	0.0010109	-4.3621	-0.0029698	-2.8773	-0.0019589	680.8187902280349	25.033	0.14476	25.021	24.972	25.117	-0.012011	1092	52	0.9644182	0.03113848	0.96289873	390.20053	0	12.598541						210	7	4	NaN	NaN	NaN	0.055983	1	18772	18772		48.319	35.749	1	19831			17853	1252	10246	10557	14181	14181					-0.03727175171252384
MYAKEFDLL	9	Unmodified	_MYAKEFDLL_					0	0	0		ENST00000478432.1_1_1:146687269-146696621:-|nuORF;nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	ENST00000478432.1_1_1:146687269-146696621:-|nuORF	ENST00000478432.1_1_1:146687269-146696621:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.28354278735	2	565.283543	1128.55253	2.2798	0.0012887	-1.0037	-0.00056737	1.2761	0.00072135	565.2835199842357	26.191	0.12064	26.191	26.143	26.263	0	1143	37	0.9332562	0.022016883	0.9332562	378.36957	0	8.9263						147	6	4	NaN	NaN	NaN	0.13999	1	14025	14025		30.035	8.2004	1	16277			17854	2727	10247	10558	14182	14182					-0.0066015235152008245
MYAKEFDLL	9	Unmodified	_MYAKEFDLL_					0	0	0		ENST00000478432.1_1_1:146687269-146696621:-|nuORF;nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	ENST00000478432.1_1_1:146687269-146696621:-|nuORF	ENST00000478432.1_1_1:146687269-146696621:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.28354278735	2	565.283543	1128.55253	1.7774	0.0010047	-1.6853	-0.00095267	0.092122	5.2075E-05	565.2822444798423	26.191	0.12063	26.18	26.156	26.276	-0.011137	1140	37	0.93509084	0.022014499	0.9335714	379.11337	0	8.9253235						117	6	3	NaN	NaN	NaN	0.34922	1	13583	13583		15.822	4.6516	1	12336			17855	2727	10247	10558	14183	14183					-0.0066015235152008245
MYAPLSFDESK	11	Unmodified	_MYAPLSFDESK_					0	0	0			REV__ENST00000567266.5_1_16:85833348-85838718:+|nuORF	REV__ENST00000567266.5_1_16:85833348-85838718:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.29992113305	2	644.299921	1286.58529	2.0993	0.0013526	-6.9403	-0.0044716	-4.841	-0.0031191	644.294408004649	22.934	0.14468	22.921	22.872	23.017	-0.01354	1146	58	0.93142134	0.034869432	0.9299019	377.0654	0	14.116119						144	7	2	NaN	NaN	NaN	0.33431	1	17711	17711		24.4	5.2367	1	13472	+		17856	9510	10248	10559	14184	14184					-0.04653990019323828
MYDHLCHHSS	10	Unmodified	_MYDHLCHHSS_					0	0	0			REV__ENST00000496418.5_1_3:132297797-132297956:-|nuORF	REV__ENST00000496418.5_1_3:132297797-132297956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2449573306	2	615.244957	1228.47536	0.3829	0.00023557	6.358	0.0039117	6.7409	0.0041473	615.248734924202	33.094	0.12066	33.094	33.094	33.214	0	1149	67	0.92958635	0.040399075	0.92958635	376.51147	0	16.362885						101	6	2	NaN	NaN	NaN	0.75316	1	17196	17196		4.4131	0	1	7848.8	+		17857	12500	10249	10560	14185	14185					-0.12973693839512634
MYDHLCHHSS	10	Unmodified						0	0	0			REV__ENST00000496418.5_1_3:132297797-132297956:-|nuORF	REV__ENST00000496418.5_1_3:132297797-132297956:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.244957	1228.47536	0.3829	0.00023557	6.358	0.0039117	6.7409	0.0041473	615.248734924202	33.094	0.12066	33.094	33.094	33.214	0	1149	67	0.92958635	0.040399075	0.92958635	376.51147		16.362885	0	0	0	NaN	4.4131	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7848.8	+		17858	12500	10249	10560							-0.12973693839512634
MYDSFWRQF	9	Unmodified	_MYDSFWRQF_					0	0	0		ENST00000520364.1_1_6:109309715-109314184:-|nuORF;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.28186576565	2	640.281866	1278.54918	1.8771	0.0012019	0.56211	0.00035991	2.4392	0.0015618	640.7843683274076	27.76	0.19305	27.76	27.688	27.881	0	1143	64	0.9332562	0.038523257	0.9332562	377.83337	0	15.596344						368	9	4	NaN	NaN	NaN	0.03618	1	18388	18388		52.78	34.981	1	52406			17859	903	10250	10561	14186	14186					-0.0789540240552924
MYDSFWRQF	9	Unmodified	_MYDSFWRQF_					0	0	0		ENST00000520364.1_1_6:109309715-109314184:-|nuORF;nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.28186576565	2	640.281866	1278.54918	1.5566	0.00099668	0.30319	0.00019412	1.8598	0.0011908	640.782958129706	27.783	0.16898	27.774	27.702	27.87	-0.009552	1143	67	0.9332562	0.040351212	0.93173677	377.83337	0	16.336365						243	8	3	NaN	NaN	NaN	0.021751	1	17566	17566		69.782	37.329	1	40165			17860	903	10250	10561	14187	14187					-0.0789540240552924
MYDSYWRQF	9	Oxidation (M)	_M(Oxidation (M))YDSYWRQF_		M(1)YDSYWRQF		M(41)YDSYWRQF	0	0	1		nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000149212|P58005-4|SESN3	nc|ENSG00000149212|P58005-4|SESN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2767803877499	2	656.27678	1310.53901	1.5902	0.0010436	0.52826	0.00034669	2.1185	0.0013903	656.7796337133269	23.345	0.12063	23.345	23.32	23.441	0	1134	43	0.9387595	0.02568084	0.9387595	379.96225	0	10.394287						98	6	3	NaN	NaN	NaN	0.064504	1	18949	18949		40.957	28.369	1	9667.7			17861	3663	10251	10562	14188	14188		409			-0.10384010130769639
MYDSYWRQF	9	Oxidation (M)						0	0	1		nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000149212|P58005-4|SESN3	nc|ENSG00000149212|P58005-4|SESN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	656.27678	1310.53901	1.6076	0.001055	1.5293	0.0010037	3.1369	0.0020587	656.2784517570998	23.392	0.096531	23.379	23.331	23.427	-0.013296	1140	40	0.93509084	0.023845196	0.9335714	378.47736		9.651337	0.017218	0.00050707	-0.0025941	NaN	40.957	127	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11664			17862	3663	10251	10562				409			-0.10384010130769639
MYFAWLGFY	9	Unmodified	_MYFAWLGFY_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.8527726822	3	399.852773	1196.53649	1.6345	0.00065355	-0.20032	-8.0099E-05	1.4342	0.00057345	400.1871348940299	22.959	0.072256	22.959	22.935	23.007	0	1470	31	0.7320868	0.018567085	0.7320868	444.90466	0	11.28363						57	4	2	NaN	NaN	NaN	0.65388	1	16350	16350		1.5054	0.27646	1	4547.6			17863	828	10252	10563	14189	14189					-0.05391813797746181
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(50)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.25224265895	2	555.252243	1108.48993	1.4554	0.0008081	-2.5623	-0.0014227	-1.1069	-0.00061463	555.2510351170531	29.811	0.16893	29.811	29.763	29.932	0	1296	76	0.8394264	0.046094477	0.8394264	340.40253	0	18.692139						285	8	4	NaN	NaN	NaN	0.043119	1	13211	13211		49.833	21.166	1	47638			17864	862	10253	10564	14190	14190		92			-0.059972984197202095
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(64)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.4972088512998	1	1109.49721	1108.48993	1.9211	0.0021314	-0.60595	-0.0006723	1.3151	0.0014591	1109.4965164410717	29.787	0.1207	29.787	29.763	29.884	0	93	73	1.5635144	0.04241681	1.5635144	317.02014	0	8.600494						254	6	4	NaN	NaN	NaN	0.026295	1	13213	13213		63.958	42.187	1	24993			17865	862	10253	10564	14191	14191		92			-0.059972984197202095
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(62)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.25224265895	2	555.252243	1108.48993	1.0802	0.00059981	-2.1835	-0.0012124	-1.1032	-0.00061256	555.2511388103683	29.811	0.16888	29.803	29.755	29.924	-0.0070648	1293	79	0.84127116	0.047935665	0.8397517	341.1506	0	19.438782						300	8	3	NaN	NaN	NaN	0.02781	1	12837	12837		61.977	30.416	1	52164			17866	862	10253	10564	14192	14192		92			-0.059972984197202095
MYGLFQTSF	9	Unmodified	_MYGLFQTSF_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2547853479	2	547.254785	1092.49502	0.66261	0.00036262	-3.6506	-0.0019978	-2.988	-0.0016352	547.7538207970506	31.669	0.21725	31.664	31.616	31.833	-0.0044155	1299	88	0.8375814	0.053463817	0.83606195	339.71542	0	21.684448						499	10	4	NaN	NaN	NaN	0.043119	1	12177	12177		49.833	24.032	1	73633			17867	862	10253	10565	14193	14193					-0.04752994557088641
MYGLFQTSF	9	Unmodified	_MYGLFQTSF_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1093.5022942291998	1	1093.50229	1092.49502	0.74747	0.00081736	3.8019	0.0041573	4.5493	0.0049747	1093.5054010059364	31.669	0.19311	31.664	31.616	31.809	-0.0044155	99	109	1.5599792	0.06365895	1.5584598	316.36032	0	12.909882						343	9	2	NaN	NaN	NaN	0.11656	1	12179	12179		33.425	15.456	1	74715			17868	862	10253	10565	14194	14194					-0.04752994557088641
MYGPLDVV	8	Unmodified	_MYGPLDVV_					0	0	0		ENST00000526450.1_1_11:67261391-67262403:-|nuORF;ENST00000527370.5_1_11:67259506-67263940:-|nuORF;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	ENST00000526450.1_1_11:67261391-67262403:-|nuORF	ENST00000526450.1_1_11:67261391-67262403:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.4437167178	1	893.443717	892.43644	-0.41313	-0.00036911	-6.8743	-0.0061418	-7.2874	-0.0065109	893.438293556426	54.522	0.12054	54.521	54.497	54.617	-0.0006218	345	61	1.4143922	0.035663843	1.4128729	287.6367	0	7.252777						213	6	3	NaN	NaN	NaN	0.83849	1	5837	5837		4.0537	0.48046	1	26367			17869	1771	10254	10566	14195	14195					-0.01408051131556931
MYGQIVEEL	9	Unmodified	_MYGQIVEEL_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5234236017998	1	1081.52342	1080.51615	1.1135	0.0012042	-0.54546	-0.00058993	0.56802	0.00061432	1081.5251602840367	27.109	0.1931	27.109	27.012	27.205	0	105	115	1.5564433	0.06724548	1.5564433	315.68692	0	13.63913						199	9	3	NaN	NaN	NaN	0.070055	1	11994	11994		40.154	2.023	1	20443			17870	397	10255	10567	14196	14196					-0.020890292482363293
MYGQIVEEL	9	Unmodified	_MYGQIVEEL_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5234236017998	1	1081.52342	1080.51615	1.4051	0.0015196	0.60583	0.00065522	2.0109	0.0021748	1081.5239155147024	27.132	0.12065	27.122	27.098	27.218	-0.010126	105	52	1.5564433	0.030056357	1.5549239	315.68692	0	6.096222						182	6	3	NaN	NaN	NaN	0.017076	1	11680	11680		75.698	25.866	1	18027			17871	397	10255	10567	14197	14197					-0.020890292482363293
MYIARQLSF	9	Unmodified	_MYIARQLSF_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.7971516891	2	564.797152	1127.57975	1.8336	0.0010356	-2.3167	-0.0013085	-0.48309	-0.00027285	564.7961289193993	23.995	0.19303	23.995	23.971	24.164	0	1200	55	0.89836043	0.03309667	0.89836043	364.2256	0	13.418488						274	9	4	NaN	NaN	NaN	0.013696	1	14000	14000		81.699	51.089	1	46751			17872	3234;675	10256	10568	14198	14198					0.021063759795197257
MYIARQLSF	9	Unmodified	_MYIARQLSF_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7971516891	2	564.797152	1127.57975	1.4221	0.00080317	-1.5441	-0.00087211	-0.12206	-6.894E-05	564.7964760209277	24.043	0.193	24.031	23.958	24.151	-0.012749	1200	43	0.89836043	0.025739074	0.896841	364.2256	0	10.435486						245	9	4	NaN	NaN	NaN	0.015029	1	13559	13559		78.289	43.851	1	46742			17873	3234;675	10256	10568	14199	14199					0.021063759795197257
MYIARQLSF	9	Oxidation (M)	_M(Oxidation (M))YIARQLSF_		M(1)YIARQLSF		M(41)YIARQLSF	0	0	1		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.79460900015	2	572.794609	1143.57467	1.1114	0.00063662	-2.2156	-0.0012691	-1.1041	-0.00063245	572.7930931166344	21.802	0.16849	21.788	21.667	21.836	-0.013895	1203	43	0.8965218	0.025739074	0.89500237	363.41873	0	10.433716						189	8	4	NaN	NaN	NaN	0.064504	1	14102	14102		40.957	8.5041	1	31223			17874	3234;675	10256	10569	14200	14200		68			0.008620721169108947
MYIDPDLLAEL	11	Unmodified	_MYIDPDLLAEL_					0	0	0		SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant;ENSG00000104611|ENST00000265807|SH2D4A	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8257717428002	2	646.825772	1291.63699	1.5786	0.0010211	-2.8237	-0.0018264	-1.2451	-0.00080535	646.824194683811	36.471	0.12062	36.471	36.446	36.567	0	1101	55	0.95892316	0.032968342	0.95892316	388.18274	0	13.345947						162	6	3	NaN	NaN	NaN	0.25335	1	18618	18618		27.296	14.708	1	17419			17875	1481	10257	10570	14201	14201					0.0028375367460284906
MYIDPDLLAEL	11	Unmodified	_MYIDPDLLAEL_					0	0	0		SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant;ENSG00000104611|ENST00000265807|SH2D4A	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8257717428002	2	646.825772	1291.63699	1.8237	0.0011796	-2.7385	-0.0017713	-0.91478	-0.0005917	646.8240244655427	36.493	0.07233	36.494	36.47	36.543	0.0016747	1098	46	0.960755	0.027472138	0.9592356	388.9243	0	11.121033						93	4	3	NaN	NaN	NaN	0.4078	1	17787	17787		21.771	4.9128	1	9384.5			17876	1481	10257	10570	14202	14202					0.0028375367460284906
MYIFKTLASA	10	Unmodified	_MYIFKTLASA_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.20721552829997	3	382.207216	1143.59982	2.0267	0.00077462	-2.0761	-0.00079348	-0.049345	-1.886E-05	382.2062054051897	18.94	0.048048	18.94	18.916	18.964	0	1446	25	0.7469324	0.014840782	0.7469324	454.1657	0	9.023804						34	3	2	NaN	NaN	NaN	0.60686	1	14589	14589		11.561	0	1	2611.3			17877	4953	10258	10571	14203	14203					0.033761269194883425
MYIFPVHWQF	10	Unmodified	_MYIFPVHWQF_					0	0	0		ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.33390133615	2	684.333901	1366.65325	1.3342	0.00091302	0.50451	0.00034525	1.8387	0.0012583	684.8370635627397	32.9	0.21722	32.9	32.804	33.021	0	1083	76	0.9699114	0.04578203	0.9699114	392.40277	0	18.522278						239	10	3	NaN	NaN	NaN	0.2358	1	19764	19764		32.453	15.594	1	18925			17878	1901	10259	10572	14204	14204					-0.01541075578006712
MYIFPVHWQF	10	Unmodified	_MYIFPVHWQF_					0	0	0		ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.33390133615	2	684.333901	1366.65325	1.2527	0.00085723	-2.6803	-0.0018342	-1.4276	-0.00097698	684.8343645863762	32.948	0.12067	32.945	32.897	33.018	-0.0024757	1080	67	0.9717421	0.040294707	0.97022265	393.14343	0	16.302246						141	6	2	NaN	NaN	NaN	0.47601	1	18838	18838		20.449	2.479	1	14699			17879	1901	10259	10572	14205	14205					-0.01541075578006712
MYIIPVVLF	9	Unmodified	_MYIIPVVLF_					0	0	0		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.6318518392	1	1094.63185	1093.62458	1.4356	0.0015715	0.61699	0.00067538	2.0526	0.0022469	1094.6324617393338	42.123	0.072029	42.123	42.099	42.171	0	51	70	1.5882392	0.040608644	1.5882392	322.08722	0	8.2352295						186	4	3	NaN	NaN	NaN	0.015198	1	12579	12579		78.076	33.444	1	19102			17880	4103	10260	10573	14206	14206					0.08150806792855292
MYIIPVVLF	9	Unmodified	_MYIIPVVLF_					0	0	0		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.6318518392	1	1094.63185	1093.62458	0.91596	0.0010026	-0.13777	-0.0001508	0.7782	0.00085184	1094.6318927891473	42.097	0.11986	42.106	42.058	42.178	0.0089989	60	64	1.582944	0.037073493	1.5814246	321.01343	0	7.518341						183	6	3	NaN	NaN	NaN	0.024982	1	12251	12251		65.676	21.044	1	13364			17881	4103	10260	10573	14207	14207					0.08150806792855292
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(45)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.81702146395	2	555.817021	1109.61949	0.40581	0.00022556	-2.218	-0.0012328	-1.8122	-0.0010073	555.8160758032274	38.78	0.21624	38.78	38.66	38.876	0	1218	49	0.8873258	0.029441535	0.8873258	359.8221	0	11.938934						216	10	3	NaN	NaN	NaN	0.055365	1	13279	13279		44.632	23.68	1	25724			17882	4103	10260	10574	14208	14208		442			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(55)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1110.6267664613	1	1110.62677	1109.61949	1.4252	0.0015829	1.848	0.0020525	3.2733	0.0036354	1110.6285076635863	38.754	0.14421	38.758	38.662	38.806	0.0040245	54	43	1.5864743	0.024709105	1.5849549	321.6715	0	5.0099792						97	7	2	NaN	NaN	NaN	0.033463	1	12903	12903		54.579	33.626	1	6080.3			17883	4103	10260	10574	14209	14209		442			0.06906502930246461
MYINDKLPYF	10	Unmodified	_MYINDKLPYF_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.3231992641	2	652.323199	1302.63185	1.4329	0.0009347	-1.8204	-0.0011875	-0.38756	-0.00025281	652.3230555461464	27.591	0.19307	27.591	27.543	27.736	0	1131	64	0.94059354	0.038502514	0.94059354	380.7287	0	15.584869						369	9	4	NaN	NaN	NaN	0.060038	1	18822	18822		51.467	30.954	1	66612			17884	555	10261	10575	14210	14210					-0.00736505397367182
MYINDKLPYF	10	Unmodified	_MYINDKLPYF_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.3231992641	2	652.323199	1302.63185	0.72639	0.00047384	-2.0169	-0.0013156	-1.2905	-0.00084181	652.3226516808785	27.615	0.24128	27.605	27.557	27.798	-0.009552	1131	82	0.94059354	0.049503207	0.93907416	380.7287	0	20.037659						459	11	5	NaN	NaN	NaN	0.0028528	1	17991	17991		83.13	62.681	1	73307			17885	555	10261	10575	14211	14211					-0.00736505397367182
MYINDKLPYF	10	Oxidation (M)	_M(Oxidation (M))YINDKLPYF_		M(1)YINDKLPYF		M(61)YINDKLPYF	0	0	1		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.32065657515	2	660.320657	1318.62676	2.3437	0.0015476	-2.4512	-0.0016186	-0.10744	-7.0945E-05	660.3192857036191	25.949	0.24138	25.938	25.841	26.083	-0.0116	1128	79	0.9424274	0.04766208	0.94090796	381.42245	0	19.289948						510	11	4	NaN	NaN	NaN	0.02603	1	18244	18244		61.199	46.023	1	66776			17886	555	10261	10576	14212	14212		55			-0.019808092599987503
MYINEVERL	9	Unmodified	_MYINEVERL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.7973486543501	2	583.797349	1165.58014	2.2359	0.0013053	-6.3677	-0.0037174	-4.1318	-0.0024121	584.294361932266	22.742	0.14469	22.742	22.694	22.838	0	1176	76	0.9130621	0.045950234	0.9130621	370.04034	0	18.622437						304	7	4	NaN	NaN	NaN	0.045904	1	15321	15321		48.65	7.6934	1	59211			17887	3764	10262	10577	14213	14213					0.0039775090874627494
MYINEVERL	9	Unmodified	_MYINEVERL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.7973486543501	2	583.797349	1165.58014	1.5132	0.00088343	-3.217	-0.0018781	-1.7037	-0.00099463	584.2958959184843	22.766	0.16873	22.752	22.655	22.824	-0.01354	1173	73	0.91489893	0.044105053	0.9133795	370.78476	0	17.874634						247	8	3	NaN	NaN	NaN	0.084037	1	14794	14794		38.131	10.342	1	53455			17888	3764	10262	10577	14214	14214					0.0039775090874627494
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.8519269138001	2	631.851927	1261.6893	1.8437	0.0011649	-1.9762	-0.0012487	-0.13256	-8.3756E-05	631.8510910692441	23.513	0.14458	23.513	23.465	23.61	0	1083	43	0.9699114	0.02563101	0.9699114	392.7295	0	10.378326						155	7	3	NaN	NaN	NaN	0.024359	1	18037	18037		76.739	50.938	1	18123			17889	2879;3714;7410	10263	10578	14215	14215					0.06892381598868269
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.8519269138001	2	631.851927	1261.6893	1.7811	0.0011254	-2.4351	-0.0015386	-0.65402	-0.00041324	631.8513289762717	23.73	0.096346	23.717	23.645	23.741	-0.013048	1089	37	0.96624947	0.02197653	0.96473	391.24673	0	8.89856						93	5	2	NaN	NaN	NaN	0.077759	1	17256	17256		44.638	31.175	1	9537			17890	2879;3714;7410	10263	10578	14216	14216					0.06892381598868269
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.8519269138001	2	631.851927	1261.6893	1.9541	0.0012347	-1.8771	-0.001186	0.077004	4.8655E-05	631.8507349791473	23.802	0.096439	23.789	23.789	23.886	-0.013048	1089	28	0.96624947	0.016481519	0.96473	391.24673	0	6.673584						62	5	2	NaN	NaN	NaN	0.62869	1	17257	17257		7.5404	4.3288	1	5300.7			17891	2879;3714;7410	10263	10578	14217	14217					0.06892381598868269
MYIRYLYKL	9	Oxidation (M)	_M(Oxidation (M))YIRYLYKL_		M(1)YIRYLYKL		M(61)YIRYLYKL	0	0	1		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.84938422485	2	639.849384	1277.68422	1.8065	0.0011559	-0.86828	-0.00055557	0.93821	0.00060031	639.8491486397263	21.633	0.02416	21.633	21.609	21.633	0	1095	34	0.9625867	0.02014625	0.9625867	389.7108	0	8.156372						42	2	2	NaN	NaN	NaN	0.028349	1	18377	18377		61.271	48.17	1	8663.5			17892	2879;3714;7410	10263	10579	14218	14218		332			0.05648077736236701
MYLATVFRWA	10	Unmodified	_MYLATVFRWA_					0	0	0			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.8864763582334	3	419.886476	1256.6376	1.7138	0.00071958	7.23	0.0030358	8.9438	0.0037554	419.8896065207686	17.858	0.33602	17.844	17.844	18.18	-0.013786	1431	70	0.75620437	0.042655706	0.7546849	459.31116	0	25.90866						286	15	2	NaN	NaN	NaN	0.69717	1	17162	17162		6.6174	3.3564	1	66559	+		17893	9696	10264	10580	14219	14219					0.019546379049870666
MYLGITPSI	9	Unmodified	_MYLGITPSI_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.5277806982	1	994.527781	993.520504	1.2794	0.0012724	0.77256	0.00076833	2.052	0.0020407	994.5290862068975	29.979	0.14481	29.973	29.925	30.07	-0.0064087	171	82	1.5174994	0.04786837	1.51598	308.12778	0	9.719666						188	7	2	NaN	NaN	NaN	0.056143	1	8182	8182		44.302	12.741	1	29037			17894	586	10265	10581	14220	14220					0.023484799653374466
MYLGSLAFL	9	Unmodified	_MYLGSLAFL_					0	0	0		ENST00000534464.1_2_11:10327229-10327346:+|nuORF;ENSG00000148926|ENST00000278175|ADM	ENST00000534464.1_2_11:10327229-10327346:+|nuORF	ENST00000534464.1_2_11:10327229-10327346:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5328660761	1	1014.53287	1013.52559	1.3874	0.0014076	1.1374	0.0011539	2.5248	0.0025615	1014.534004603454	35.578	0.072392	35.578	35.554	35.627	0	144	49	1.533442	0.028325915	1.533442	311.28082	0	5.75						86	4	2	NaN	NaN	NaN	0.31766	1	9128	9128		17.78	4.0433	1	8135.4			17895	3656	10266	10582	14221	14221					0.019367838279663374
MYLGSLAFL	9	Unmodified	_MYLGSLAFL_					0	0	0		ENST00000534464.1_2_11:10327229-10327346:+|nuORF;ENSG00000148926|ENST00000278175|ADM	ENST00000534464.1_2_11:10327229-10327346:+|nuORF	ENST00000534464.1_2_11:10327229-10327346:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5328660761	1	1014.53287	1013.52559	1.1921	0.0012094	0.54453	0.00055244	1.7366	0.0017619	1014.5326799423167	35.577	0.072353	35.577	35.553	35.626	0.00052643	141	49	1.5352125	0.028328896	1.5336931	311.6402	0	5.7506104						109	4	3	NaN	NaN	NaN	0.062836	1	8950	8950		41.46	7.7618	1	8095.9			17896	3656	10266	10582	14222	14222					0.019367838279663374
MYLGWTPYM	9	Unmodified	_MYLGWTPYM_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1161.5107504255	1	1161.51075	1160.50347	1.7169	0.0019942	-2.1467	-0.0024935	-0.42982	-0.00049924	1161.509257925559	32.441	0.096512	32.438	32.414	32.51	-0.0031052	120	49	1.5476005	0.028304815	1.5460811	313.62036	0	5.735962						138	5	3	NaN	NaN	NaN	0.020004	1	14640	14640		71.993	40.432	1	10417			17897	4973	10267	10583	14223	14223					-0.0703576391210845
MYLGWTPYM	9	Unmodified						0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1161.51075	1160.50347	2.3691	0.0027518	-2.2062	-0.0025625	0.16296	0.00018927	1161.5092643215003	32.466	0.096512	32.466	32.418	32.514	0	126	49	1.544062	0.028307796	1.544062	312.9033		5.7365723	0.014154	-2.6779E-05	-0.0010095	NaN	71.993	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10593			17898	4973	10267	10583							-0.0703576391210845
MYLKLVQLF	9	Unmodified	_MYLKLVQLF_					0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA;ENST00000562424.1_1_16:89805011-89806109:-|nuORF	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.83574553335	2	577.835746	1153.65694	0.9991	0.00057732	-1.4399	-0.00083201	-0.44076	-0.00025469	577.835562266444	31.621	0.096535	31.621	31.597	31.694	0	1140	43	0.93509084	0.025686324	0.93509084	379.01382	0	10.411255						114	5	3	NaN	NaN	NaN	0.44834	1	14939	14939		17.799	8.6758	1	11010			17899	5517	10268	10584	14224	14224					0.08625594195837039
MYLKLVQLF	9	Unmodified	_MYLKLVQLF_					0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA;ENST00000562424.1_1_16:89805011-89806109:-|nuORF	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.83574553335	2	577.835746	1153.65694	0.60901	0.00035191	-1.4495	-0.00083755	-0.84044	-0.00048564	577.8348303815687	31.693	0.14483	31.688	31.64	31.785	-0.0044174	1140	46	0.93509084	0.027522564	0.9335714	379.01382	0	11.155518						125	7	3	NaN	NaN	NaN	0.21451	1	14451	14451		34.439	13.883	1	10525			17900	5517	10268	10584	14225	14225					0.08625594195837039
MYLKQILYL	9	Unmodified	_MYLKQILYL_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8410278765001	2	592.841028	1183.6675	1.3117	0.00077765	-3.0005	-0.0017788	-1.6887	-0.0010011	592.8396244057747	29.16	0.14479	29.16	29.136	29.28	0	1089	46	0.96624947	0.027472138	0.96624947	391.5258	0	11.131775						263	7	6	NaN	NaN	NaN	0.056143	1	15979	15979		44.302	10.604	1	70411			17901	249	10269	10585	14226	14226					0.08301576850294623
MYLKQILYL	9	Unmodified	_MYLKQILYL_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8410278765001	2	592.841028	1183.6675	0.83805	0.00049683	-2.5669	-0.0015218	-1.7289	-0.0010249	592.8394126762519	29.207	0.26546	29.2	29.151	29.417	-0.0077209	1089	52	0.96624947	0.031135082	0.96473	391.5258	0	12.615997						350	12	4	NaN	NaN	NaN	0.028349	1	15367	15367		61.271	37.937	1	73123			17902	249	10269	10585	14227	14227					0.08301576850294623
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.80718505915	2	572.807185	1143.59982	1.9376	0.0011099	-3.9601	-0.0022684	-2.0225	-0.0011585	572.8062475849927	18.916	0.072033	18.916	18.916	18.988	0	1167	34	0.91857195	0.020198464	0.91857195	372.35703	0	8.187775						71	4	3	NaN	NaN	NaN	0.045904	1	14588	14588		48.65	29.532	1	9382.6			17903	5626	10270	10586	14228	14228					0.033761269194883425
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.80718505915	2	572.807185	1143.59982	1.3848	0.00079324	-0.67417	-0.00038617	0.71066	0.00040707	572.8070101612917	19.034	0.047945	19.02	19.02	19.068	-0.014059	1170	34	0.91673553	0.02020061	0.9152161	371.61258	0	8.18866						74	3	3	NaN	NaN	NaN	0.34922	1	14108	14108		15.822	6.0759	1	9396.9			17904	5626	10270	10586	14229	14229					0.033761269194883425
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.20721552829997	3	382.207216	1143.59982	2.1864	0.00083567	0.25427	9.7185E-05	2.4407	0.00093286	382.2075922518135	19.034	0.071983	19.02	18.996	19.068	-0.014059	1449	28	0.74507743	0.016694963	0.743558	453.0378	0	10.151245						48	4	2	NaN	NaN	NaN	0.64666	1	14109	14109		1.8901	0.85009	1	3879.3			17905	5626	10270	10586	14230	14230					0.033761269194883425
MYLKTVDKF	9	Oxidation (M)	_M(Oxidation (M))YLKTVDKF_		M(1)YLKTVDKF		M(45)YLKTVDKF	0	0	1		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8046423702	2	580.804642	1159.59473	1.9706	0.0011445	-3.2967	-0.0019148	-1.3261	-0.00077023	581.3039339539139	17.282	0.048004	17.268	17.268	17.316	-0.013567	1200	46	0.89836043	0.027573109	0.896841	364.1041	0	11.1753235						59	3	2	NaN	NaN	NaN	0.055363	1	14621	14621		44.633	15.738	1	7936.9			17906	5626	10270	10587	14231	14231		573			0.021318230568567742
MYMRPDTTF	9	Unmodified	_MYMRPDTTF_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.25700207335	2	581.257002	1160.49945	1.6526	0.00096059	-7.8442	-0.0045595	-6.1916	-0.0035989	581.2522234000609	28.894	0.14479	28.894	28.846	28.991	0	1212	61	0.8910048	0.036782026	0.8910048	361.1196	0	14.907562						144	7	2	NaN	NaN	NaN	0.51576	1	15151	15151		8.962	0.71716	1	12934			17907	4970	10271	10588	14232	14232					-0.074378534058269
MYMTVSIIDRF	11	Unmodified	_MYMTVSIIDRF_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.34106605375	2	688.341066	1374.66758	1.7288	0.00119	-7.3042	-0.0050278	-5.5755	-0.0038378	688.3394917917994	29.305	0.21715	29.305	29.232	29.449	0	1059	73	0.98455137	0.043910444	0.98455137	398.30252	0	17.764069						462	10	5	NaN	NaN	NaN	0.048526	1	19852	19852		50.211	41.966	1	60574			17908	2846	10272	10589	14233	14233					-0.004767912120314577
MYMTVSIIDRF	11	Unmodified	_MYMTVSIIDRF_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.34106605375	2	688.341066	1374.66758	1.1796	0.00081196	-5.1775	-0.0035639	-3.9979	-0.0027519	688.3390405922997	29.328	0.16891	29.32	29.296	29.465	-0.0077209	1056	73	0.9863805	0.043910444	0.9848611	399.04248	0	17.7641						439	8	5	NaN	NaN	NaN	0.029054	1	18915	18915		57.081	33.964	1	57260			17909	2846	10272	10589	14234	14234					-0.004767912120314577
MYMTVSIIDRF	11	Oxidation (M)	_MYM(Oxidation (M))TVSIIDRF_		M(0.018)YM(0.982)TVSIIDRF		M(-17)YM(17)TVSIIDRF	0	0	1		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3385233647999	2	696.338523	1390.66249	1.5671	0.0010912	-3.065	-0.0021343	-1.4979	-0.0010431	696.3372650128365	26.505	0.19306	26.505	26.456	26.65	0	1074	58	0.9754029	0.0347718	0.9754029	394.55627	0	14.06543						298	9	5	NaN	NaN	NaN	0.055983	1	19989	19989		48.319	33.894	2	51157			17910	2846	10272	10590	14235	14235		330;331			-0.01721095074663026
MYMTVSIIDRF	11	Oxidation (M)	_MYM(Oxidation (M))TVSIIDRF_		M(0.015)YM(0.985)TVSIIDRF		M(-18)YM(18)TVSIIDRF	0	0	1		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3385233647999	2	696.338523	1390.66249	0.97161	0.00067657	-2.7254	-0.0018978	-1.7538	-0.0012212	696.33708379939	26.529	0.21716	26.518	26.47	26.687	-0.010645	1071	49	0.977233	0.029279947	0.97571355	395.29654	0	11.843903						351	10	5	NaN	NaN	NaN	0.0015715	1	19049	19049		77.489	51.688	2	52608			17911	2846	10272	10590	14236	14236		330;331			-0.01721095074663026
MYMTVSIIDRF	11	2 Oxidation (M)	_M(Oxidation (M))YM(Oxidation (M))TVSIIDRF_		M(1)YM(1)TVSIIDRF		M(75)YM(75)TVSIIDRF	0	0	2		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.33598067585	2	704.335981	1406.65741	1.5637	0.0011014	-3.2503	-0.0022893	-1.6865	-0.0011879	704.3347019643755	25.443	0.19304	25.443	25.346	25.539	0	1074	61	0.9754029	0.036603868	0.9754029	394.5121	0	14.80484						332	9	4	NaN	NaN	NaN	0.00427	1	20115	20115		74.865	55.701	1	52519			17912	2846	10272	10591	14237	14237		330;331			-0.029653989372491196
MYMTVSIIDRF	11	2 Oxidation (M)	_M(Oxidation (M))YM(Oxidation (M))TVSIIDRF_		M(1)YM(1)TVSIIDRF		M(80)YM(80)TVSIIDRF	0	0	2		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.33598067585	2	704.335981	1406.65741	1.5287	0.0010767	-2.1153	-0.0014899	-0.58663	-0.00041319	704.3351381148273	25.443	0.1689	25.431	25.382	25.551	-0.012011	1074	52	0.9754029	0.031111658	0.97388345	394.5121	0	12.583405						182	8	2	NaN	NaN	NaN	0.00024842	1	19167	19167		80.24	55.84	1	46111			17913	2846	10272	10591	14238	14238		330;331			-0.029653989372491196
MYNLFWRHF	9	Unmodified	_MYNLFWRHF_					0	0	0		ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.5464541115333	3	438.546454	1312.61753	1.891	0.00082929	-4.0879	-0.0017927	-2.1969	-0.00096344	438.5451309153279	25.781	0.07239	25.781	25.757	25.829	0	1416	25	0.76547134	0.014824688	0.76547134	464.7246	0	9.000214						37	4	2	NaN	NaN	NaN	0.58159	1	18992	18992		3.5794	1.7292	1	2276.5			17914	2669	10273	10592	14239	14239					-0.026271130349869054
MYPAIFDQL	9	Unmodified	_MYPAIFDQL_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5335943576	1	1097.53359	1096.52632	1.5269	0.0016758	0.6172	0.0006774	2.1441	0.0023532	1097.5362377747897	32.225	0.16894	32.225	32.177	32.345	0	75	100	1.5741152	0.058320045	1.5741152	319.21243	0	11.82666						347	8	4	NaN	NaN	NaN	0.010404	1	12687	12687		91.563	49.779	1	44335			17915	650	10274	10593	14240	14240					-0.01808421522991921
MYPAIFDQL	9	Unmodified	_MYPAIFDQL_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.5335943576	1	1097.53359	1096.52632	1.2549	0.0013773	2.0316	0.0022297	3.2865	0.0036071	1097.5379753692841	32.224	0.24132	32.22	32.123	32.365	-0.0037613	72	97	1.5758814	0.056549788	1.5743619	319.5706	0	11.467651						399	11	3	NaN	NaN	NaN	0.017076	1	12356	12356		75.698	28.658	1	48410			17916	650	10274	10593	14241	14241					-0.01808421522991921
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(42)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.26789272315	2	557.267893	1112.52123	1.1209	0.00062463	0.36263	0.00020208	1.4835	0.00082671	557.2681742077112	30.608	0.28963	30.608	30.511	30.801	0	1227	79	0.88180584	0.047842503	0.88180584	357.57224	0	19.400116						358	13	3	NaN	NaN	NaN	0.062072	1	13367	13367		41.785	26.322	1	48328			17917	650	10274	10594	14242	14242		66			-0.03052725385600752
MYPDEVLPY	9	Unmodified	_MYPDEVLPY_					0	0	0			REV__ENSG00000179918|ENST00000478753|SEPHS2	REV__ENSG00000179918|ENST00000478753|SEPHS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.75990051555	2	563.759901	1125.50525	1.949	0.0010988	-0.011791	-6.6474E-06	1.9372	0.0010921	563.7613483769932	27.808	0.2172	27.808	27.712	27.929	0	1212	88	0.8910048	0.053400338	0.8910048	361.2514	0	21.650757						336	10	4	NaN	NaN	NaN	0.47587	1	13891	13891		10.605	2.3147	1	61363	+		17918	10815	10275	10595	14243	14243					-0.052484316224990835
MYPDLSELLM	10	2 Oxidation (M)	_M(Oxidation (M))YPDLSELLM(Oxidation (M))_		M(1)YPDLSELLM(1)		M(58)YPDLSELLM(58)	0	0	2		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.28288247285	2	622.282882	1242.55121	0.82627	0.00051417	-1.7419	-0.001084	-0.91567	-0.0005698	622.282194089033	31.621	0.19311	31.621	31.549	31.742	0	1167	70	0.91857195	0.0422377	0.91857195	372.0035	0	17.105438						358	9	5	NaN	NaN	NaN	0.033206	1	17583	17583		58.235	36.464	1	46895			17919	1922	10276	10596	14244	14244		214;215			-0.06036154502589852
MYPDLSELLM	10	2 Oxidation (M)	_M(Oxidation (M))YPDLSELLM(Oxidation (M))_		M(1)YPDLSELLM(1)		M(53)YPDLSELLM(53)	0	0	2		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.28288247285	2	622.282882	1242.55121	0.15562	9.6841E-05	-0.47201	-0.00029372	-0.31638	-0.00019688	622.2841203571387	31.62	0.24139	31.616	31.544	31.785	-0.0044155	1164	67	0.9204082	0.040390372	0.91888875	372.74713	0	16.3573						331	11	4	NaN	NaN	NaN	0.051632	1	16836	16836		52.624	29.29	1	44402			17920	1922	10276	10596	14245	14245		214;215			-0.06036154502589852
MYPDVFAHF	9	Oxidation (M)	_M(Oxidation (M))YPDVFAHF_		M(1)YPDVFAHF		M(50)YPDVFAHF	0	0	1		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.75240983445	2	571.75241	1141.49027	1.9914	0.0011386	2.8281	0.001617	4.8196	0.0027556	571.7532551661608	26.384	0.16895	26.384	26.336	26.505	0	1197	64	0.9001988	0.038610697	0.9001988	364.91718	0	15.651794						257	8	4	NaN	NaN	NaN	0.042649	1	14504	14504		50.033	29.477	1	31780			17921	4904	10277	10597	14246	14246		514			-0.0748187869985486
MYPDVFAHF	9	Unmodified	_MYPDVFAHF_					0	0	0		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7549525234	2	563.754953	1125.49535	1.0397	0.00058614	4.6328	0.0026118	5.6725	0.0031979	564.2607606308206	27.832	0.16896	27.822	27.798	27.967	-0.009552	1215	82	0.8891654	0.04971218	0.88764596	360.50565	0	20.155426						224	8	4	NaN	NaN	NaN	0.22308	1	13463	13463		23.85	6.0701	1	39751			17922	4904	10277	10598	14247	14247					-0.06237574837223292
MYPDVFAHF	9	Unmodified						0	0	0		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.754953	1125.49535	1.9491	0.0010988	8.7651	0.0049413	10.714	0.0060401	563.7613483769932	27.808	0.2172	27.808	27.712	27.929	0	1212	88	0.8910048	0.053400338	0.8910048	361.2514		21.650757	-0.0068736	0.0026335	0.0016794	NaN	23.85	336	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61363			17923	4904	10277	10598							-0.06237574837223292
MYPLKPTWWF	10	Unmodified	_MYPLKPTWWF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.8441018817	2	684.844102	1367.67365	1.606	0.0010999	-2.9015	-0.0019871	-1.2955	-0.00088724	684.8420558804899	32.08	0.21721	32.08	31.983	32.201	0	1110	88	0.95342636	0.05313003	0.95342636	385.73044	0	21.494965						477	10	3	NaN	NaN	NaN	0.19179	1	19776	19776		36.235	20.772	1	95048			17924	4227	10278	10599	14248	14248					0.004520950818005076
MYPLKPTWWF	10	Unmodified	_MYPLKPTWWF_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.8441018817	2	684.844102	1367.67365	1.1036	0.00075576	-1.6816	-0.0011516	-0.57805	-0.00039587	684.8430545987869	32.127	0.28957	32.123	32.003	32.292	-0.0037575	1104	94	0.9570911	0.056781888	0.95557165	387.21307	0	22.972443						655	13	4	NaN	NaN	NaN	0.23201	1	18848	18848		32.778	17.315	1	99773			17925	4227	10278	10599	14249	14249					0.004520950818005076
MYPLKPTWWF	10	Oxidation (M)	_M(Oxidation (M))YPLKPTWWF_		M(1)YPLKPTWWF		M(54)YPLKPTWWF	0	0	1		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.84155919275	2	692.841559	1383.66857	1.2745	0.00088303	-3.6782	-0.0025484	-2.4037	-0.0016654	693.33984275952	30.68	0.24137	30.68	30.584	30.825	0	1110	91	0.95342636	0.054941356	0.95342636	385.68582	0	22.22522						591	11	4	NaN	NaN	NaN	0.044307	1	19921	19921		53.652	27.537	1	81530			17926	4227	10278	10600	14250	14250		455			-0.007922087808310607
MYPLKPTWWF	10	Oxidation (M)	_M(Oxidation (M))YPLKPTWWF_		M(1)YPLKPTWWF		M(54)YPLKPTWWF	0	0	1		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.84155919275	2	692.841559	1383.66857	1.0106	0.00070022	-2.5089	-0.0017383	-1.4982	-0.001038	692.8398551709267	30.727	0.16888	30.722	30.601	30.77	-0.0057545	1107	88	0.9552588	0.05310142	0.9537394	386.4271	0	21.480896						334	8	2	NaN	NaN	NaN	0.044307	1	18989	18989		53.652	33.203	1	76474			17927	4227	10278	10600	14251	14251		455			-0.007922087808310607
MYPYIFHVL	9	Unmodified	_MYPYIFHVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8044454049501	2	591.804445	1181.59434	1.2459	0.0007373	4.7471	0.0028094	5.993	0.0035467	591.8039067165261	30.438	0.45843	30.432	30.311	30.77	-0.0057545	1167	100	0.91857195	0.060608506	0.9170525	372.2143	0	24.559143						849	20	4	NaN	NaN	NaN	0.10053	1	15288	15288		35.745	5.1345	1	461870			17928	561;7899	10279	10601	14252	14252					0.010804481276863953
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(66)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8019027160001	2	599.801903	1197.58925	1.2431	0.00074563	-1.6041	-0.00096217	-0.36101	-0.00021653	599.80103168845	29.062	0.43442	29.055	28.862	29.296	-0.0077209	1170	79	0.91673553	0.047739267	0.9152161	371.41293	0	19.34143						925	19	4	NaN	NaN	NaN	0.024982	1	15748	15748		65.676	42.342	1	348950			17929	561;7899	10279	10602	14253	14253		56			-0.0016385573494517303
MYPYIYHVL	9	Unmodified	_MYPYIYHVL_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8019027160001	2	599.801903	1197.58925	1.2785	0.00076687	-0.72554	-0.00043518	0.553	0.00033169	599.8016194391745	26.94	0.3866	26.94	26.746	27.133	0	1167	79	0.91857195	0.047744393	0.91857195	372.15695	0	19.343536						571	17	3	NaN	NaN	NaN	0.16059	1	16393	16393		27.861	8.7423	1	132000			17930	5339	10280	10603	14254	14254					-0.0016385573494517303
MYPYIYHVL	9	Unmodified	_MYPYIYHVL_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8019027160001	2	599.801903	1197.58925	0.93837	0.00056284	-0.9228	-0.00055349	0.015579	9.3445E-06	599.8022323871231	26.963	0.43446	26.952	26.735	27.17	-0.010645	1164	79	0.9204082	0.047739267	0.91888875	372.90088	0	19.34143						545	19	4	NaN	NaN	NaN	0.36886	1	15749	15749		15.013	7.4253	1	116880			17931	5339	10280	10603	14255	14255					-0.0016385573494517303
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(96)YSFVNDKF	0	0	1		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.76297452075	2	583.762975	1165.5114	2.1455	0.0012524	-2.0808	-0.0012147	0.064701	3.777E-05	583.7620926485432	21.97	0.28935	21.97	21.922	22.212	0	1236	70	0.876284	0.042319894	0.876284	355.13538	0	17.151184						386	13	4	NaN	NaN	NaN	0.0080618	1	15314	15314		96.341	66.743	1	52281			17932	3668;4266	10281	10604	14256	14256		410			-0.06473913390982489
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(45)YSFVNDKF	0	0	1		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.76297452075	2	583.762975	1165.5114	1.3878	0.00081016	-0.8322	-0.00048581	0.55563	0.00032435	583.7635291776924	21.97	0.24088	21.956	21.908	22.149	-0.013895	1236	88	0.876284	0.05334258	0.8747646	355.13538	0	21.618378						384	11	4	NaN	NaN	NaN	0.054111	1	14786	14786		45.165	15.567	1	52988			17933	3668;4266	10281	10604	14257	14257		410			-0.06473913390982489
MYSFVNDKF	9	Unmodified	_MYSFVNDKF_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7655172097001	2	575.765517	1149.51648	1.7072	0.00098295	1.9424	0.0011183	3.6496	0.0021013	575.7674960356994	23.682	0.24096	23.669	23.621	23.861	-0.013048	1224	115	0.883646	0.06986326	0.88212657	358.17725	0	28.31839						620	11	3	NaN	NaN	NaN	0.04743	1	14274	14274		48.002	18.404	1	94039			17934	3668;4266	10281	10605	14258	14258					-0.0522960952835092
MYSGALLFF	9	Oxidation (M)	_M(Oxidation (M))YSGALLFF_		M(1)YSGALLFF		M(50)YSGALLFF	0	0	1		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.512130634	1	1064.51213	1063.50485	1.4489	0.0015424	0.36401	0.00038749	1.8129	0.0019299	1064.5127125452289	34.855	0.19292	34.855	34.782	34.975	0	150	64	1.5299006	0.037187576	1.5299006	310.36594	0	7.544098						159	9	2	NaN	NaN	NaN	0.043119	1	11272	11272		49.833	13.246	1	23063			17935	6062	10282	10606	14259	14259		612			-0.024358065516935312
MYSGALLFF	9	Oxidation (M)	_M(Oxidation (M))YSGALLFF_		M(1)YSGALLFF		M(72)YSGALLFF	0	0	1		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.512130634	1	1064.51213	1063.50485	1.2216	0.0013004	0.40292	0.00042891	1.6245	0.0017293	1064.5130478108247	34.853	0.16875	34.853	34.78	34.949	-0.0006485	144	100	1.533442	0.058394194	1.5319226	311.0844	0	11.846252						347	8	3	NaN	NaN	NaN	0.020004	1	11011	11011		71.993	33.385	1	35182			17936	6062	10282	10606	14260	14260		612			-0.024358065516935312
MYSGALLFF	9	Unmodified	_MYSGALLFF_					0	0	0		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5172160119	1	1048.51722	1047.50994	1.7314	0.0018154	-0.20346	-0.00021333	1.5279	0.001602	1048.5169760006543	36.348	0.19263	36.35	36.278	36.47	0.0016747	150	61	1.5299006	0.03541863	1.5283811	310.42664	0	7.1866455						278	9	3	NaN	NaN	NaN	0.02781	1	10311	10311		61.977	9.2184	1	33068			17937	6062	10282	10607	14261	14261					-0.011915026890619629
MYSGALLFF	9	Unmodified						0	0	0		nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1048.51722	1047.50994	1.8898	0.0019814	-0.35852	-0.00037591	1.5312	0.0016055	1048.5170485102558	36.35	0.16875	36.35	36.302	36.471	0	153	64	1.5281296	0.03719151	1.5281296	310.0673		7.5463867	4.9137E-05	-8.156E-05	-0.00012579	NaN	61.977	269	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34082			17938	6062	10282	10607							-0.011915026890619629
MYSNVYYHI	9	Unmodified	_MYSNVYYHI_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2709667283501	2	595.270967	1188.52738	1.5097	0.0008987	-1.0772	-0.00064124	0.43252	0.00025747	595.771934785746	21.537	0.096489	21.523	21.499	21.595	-0.014004	1131	40	0.94059354	0.023845196	0.93907416	381.11203	0	9.661652						73	5	3	NaN	NaN	NaN	0.27442	1	15488	15488		20.555	9.9505	1	5391.2			17939	104	10283	10608	14262	14262					-0.05934207154064097
MYTKLFVGF	9	Unmodified	_MYTKLFVGF_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2911708542001	2	553.291171	1104.56779	1.879	0.0010396	-0.68396	-0.00037843	1.195	0.00066121	553.2908030710107	28.098	0.26548	28.098	28.05	28.315	0	1209	91	0.892844	0.05519098	0.892844	362.0801	0	22.381897						587	12	3	NaN	NaN	NaN	0.00065562	1	13042	13042		115.07	72.752	1	327900			17940	3033	10284	10609	14263	14263					0.019687592363652584
MYTKLFVGF	9	Unmodified	_MYTKLFVGF_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2911708542001	2	553.291171	1104.56779	1.5192	0.00084058	-0.86503	-0.00047862	0.6542	0.00036196	553.2907740998268	28.121	0.28958	28.112	28.064	28.354	-0.0089779	1209	91	0.892844	0.055179	0.8913246	362.0801	0	22.377045						543	13	3	NaN	NaN	NaN	0.0042638	1	12700	12700		104.2	54.237	1	317110			17941	3033	10284	10609	14264	14264					0.019687592363652584
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(75)YTKLFVGF	0	0	1		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2886281652501	2	561.288628	1120.5627	1.5985	0.0008972	-1.4667	-0.00082326	0.13173	7.394E-05	561.2883626980821	26.649	0.33788	26.639	26.542	26.88	-0.010645	1200	127	0.89836043	0.077259004	0.896841	364.2531	0	31.325806						851	15	5	NaN	NaN	NaN	0.017558	1	13303	13303		75.089	46.193	1	304460			17942	3033	10284	10610	14265	14265		343			0.007244553737336901
MYTLGITNF	9	Unmodified	_MYTLGITNF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2626103800001	2	530.26261	1058.51067	1.5755	0.00083544	-1.2383	-0.0006566	0.33726	0.00017884	530.2621981882331	30.463	0.19307	30.463	30.366	30.56	0	1251	49	0.8670771	0.029473364	0.8670771	351.81918	0	11.958893						245	9	4	NaN	NaN	NaN	0.14301	1	11020	11020		29.598	7.7633	1	43829			17943	1795	10285	10611	14266	14266					-0.016247080400262348
MYTLGITNF	9	Unmodified	_MYTLGITNF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.5179442934	1	1059.51794	1058.51067	1.8405	0.00195	0.70053	0.00074222	2.541	0.0026923	1059.5183569905892	30.463	0.19305	30.463	30.415	30.608	0	90	94	1.5652816	0.054802895	1.5652816	317.56277	0	11.118378						352	9	3	NaN	NaN	NaN	0.0052656	1	11021	11021		102.05	43.811	1	55048			17944	1795	10285	10611	14267	14267					-0.016247080400262348
MYTLGITNF	9	Unmodified	_MYTLGITNF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2626103800001	2	530.26261	1058.51067	0.62731	0.00033264	-0.83791	-0.00044431	-0.2106	-0.00011167	530.262257135178	30.438	0.16893	30.432	30.384	30.553	-0.0057545	1254	58	0.8652351	0.03500533	0.86371565	351.07178	0	14.203491						235	8	3	NaN	NaN	NaN	0.062072	1	10781	10781		41.785	25.368	1	47337			17945	1795	10285	10611	14268	14268					-0.016247080400262348
MYTLGITNF	9	Unmodified	_MYTLGITNF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.5179442934	1	1059.51794	1058.51067	1.2625	0.0013376	0.88436	0.00093699	2.1469	0.0022746	1059.5188124696087	30.462	0.26544	30.456	30.408	30.673	-0.0057545	90	97	1.5652816	0.05657375	1.5637622	317.56277	0	11.477631						363	12	3	NaN	NaN	NaN	0.054111	1	10783	10783		45.165	22.047	1	54395			17946	1795	10285	10611	14269	14269					-0.016247080400262348
MYVAIQAVL	9	Unmodified	_MYVAIQAVL_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000437653.1_1_3:175695849-175696008:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2833458221	2	504.283346	1006.55214	0.8262	0.00041664	0.6955	0.00035073	1.5217	0.00076737	504.2833711501511	31.187	0.12066	31.187	31.163	31.284	0	1269	37	0.8560222	0.022117019	0.8560222	347.56378	0	8.97998						98	6	3	NaN	NaN	NaN	0.39983	1	8853	8853		13.737	4.6139	1	8727.3			17947	841;3442	10286	10612	14270	14270					0.049124727192975115
MYVAIQAVL	9	Unmodified	_MYVAIQAVL_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000437653.1_1_3:175695849-175696008:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.2833458221	2	504.283346	1006.55214	0.97829	0.00049334	-0.14454	-7.2891E-05	0.83375	0.00042045	504.2835076176472	31.162	0.12065	31.157	31.133	31.253	-0.0050716	1266	37	0.85786515	0.022114575	0.8563457	348.31207	0	8.979004						106	6	3	NaN	NaN	NaN	0.24994	1	8676	8676		22.126	13.003	1	10493			17948	841;3442	10286	10612	14271	14271					0.049124727192975115
MYVETAERE	9	Unmodified	_MYVETAERE_					0	0	0			REV__ENSG00000117226|ENST00000370481|GBP3	REV__ENSG00000117226|ENST00000370481|GBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.5037507922	1	1127.50375	1126.49647	1.3579	0.0015311	-4.2981	-0.0048461	-2.9402	-0.0033151	1127.4982687616675	33.721	0.19306	33.721	33.648	33.842	0	72	67	1.5758814	0.038861513	1.5758814	319.46487	0	7.8780518						203	9	2	NaN	NaN	NaN	0.35794	1	13943	13943		15.463	2.8748	1	18353	+		17949	9241	10287	10613	14272	14272					-0.06171405258965024
MYVETAERE	9	Unmodified						0	0	0			REV__ENSG00000117226|ENST00000370481|GBP3	REV__ENSG00000117226|ENST00000370481|GBP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1127.50375	1126.49647	1.3579	0.0015311	-4.2981	-0.0048461	-2.9402	-0.0033151	1127.4982687616675	33.721	0.19306	33.721	33.648	33.842	0	72	67	1.5758814	0.038861513	1.5758814	319.46487		7.8780518	0.0015528	-0.00043325	0.00075972	NaN	15.463	203	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18353	+		17950	9241	10287	10613							-0.06171405258965024
MYVETAERE	9	Unmodified						0	0	0			REV__ENSG00000117226|ENST00000370481|GBP3	REV__ENSG00000117226|ENST00000370481|GBP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1127.50375	1126.49647	0.59765	0.00067386	-3.4668	-0.0039088	-2.8692	-0.003235	1127.498414547286	33.72	0.19308	33.718	33.645	33.839	-0.0018463	72	55	1.5758814	0.031792402	1.5743619	319.46487		6.4450073	-0.0015528	0.00050406	-0.00075972	NaN	15.463	162	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13030	+		17951	9241	10287	10613							-0.06171405258965024
MYVPDEWE	8	Unmodified	_MYVPDEWE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.72077535505	2	534.720775	1067.427	1.0119	0.0005411	2.3394	0.0012509	3.3513	0.001792	534.7215911640681	24.26	0.072412	24.248	24.224	24.296	-0.012749	1281	73	0.84864825	0.04425305	0.8471288	344.3047	0	17.953888						141	4	3	NaN	NaN	NaN	0.77489	1	11158	11158		12.588	1.0394	1	17260			17952	481	10288	10614	14273	14273					-0.10401864207733524
MYVSSQAIFLF	11	Unmodified	_MYVSSQAIFLF_					0	0	0		ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3310242962	2	653.331024	1304.6475	0.75118	0.00049077	-2.3799	-0.0015549	-1.6287	-0.0010641	653.328756803234	35.627	0.12057	35.627	35.603	35.723	0	1095	49	0.9625867	0.029308379	0.9625867	389.62466	0	11.863098						128	6	2	NaN	NaN	NaN	0.076968	1	18852	18852		42.995	28.953	1	13903			17953	6445	10289	10615	14274	14274					0.007357811196698094
MYVSSQAIFLF	11	Unmodified	_MYVSSQAIFLF_					0	0	0		ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3310242962	2	653.331024	1304.6475	0.23588	0.00015411	-1.7991	-0.0011754	-1.5633	-0.0010213	653.3300166177112	35.625	0.096458	35.626	35.602	35.698	0.00053024	1095	58	0.9625867	0.03480935	0.96106726	389.62466	0	14.089722						136	5	3	NaN	NaN	NaN	0.10634	1	18018	18018		39.039	25.576	1	11673			17954	6445	10289	10615	14275	14275					0.007357811196698094
NAAAIFDLF	9	Unmodified	_NAAAIFDLF_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.5040087887	1	981.504009	980.496732	1.9233	0.0018877	-1.1834	-0.0011615	0.73985	0.00072617	981.5029416997039	36.157	0.26522	36.157	36.109	36.374	0	264	115	1.4624695	0.06759596	1.4624695	297.00793	0	13.727814						599	12	4	NaN	NaN	NaN	6.5392E-05	1	7899	7899		125.02	45.821	1	170320			17955	5431	10290	10616	14276	14276					0.005703825231876181
NAAAIFDLF	9	Unmodified	_NAAAIFDLF_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|1|fusion	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.5040087887	1	981.504009	980.496732	2.0147	0.0019774	-0.39058	-0.00038336	1.6241	0.0015941	981.5038223496771	36.155	0.26501	36.157	36.108	36.373	0.0011024	264	106	1.4624695	0.062229633	1.46095	297.00793	0	12.6380005						596	12	4	NaN	NaN	NaN	0.00015011	1	7732	7732		119.86	34.514	1	166240			17956	5431	10290	10616	14277	14277					0.005703825231876181
NAAAIYDLL	9	Unmodified	_NAAAIYDLL_					0	0	0		ENST00000484061.5_1_2:47221411-47251446:+|nuORF;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENST00000484061.5_1_2:47221411-47251446:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.514573475	1	963.514573	962.507297	0.98679	0.00095079	-0.53421	-0.00051472	0.45259	0.00043607	963.5139949177518	31.163	0.16892	31.163	31.139	31.308	0	273	106	1.4571344	0.062262774	1.4571344	296.0011	0	12.64801						289	8	4	NaN	NaN	NaN	0.013281	1	7408	7408		82.96	20.984	1	93478			17957	735	10291	10617	14278	14278					0.02454365177618456
NAAAVPPG	8	Unmodified	_NAAAVPPG_					0	0	0			REV__ENST00000314233.2_15:23890641-23890966:-|nuORF	REV__ENST00000314233.2_15:23890641-23890966:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3675153073001	1	696.367515	695.360239	-0.77198	-0.00053758	-2.5901	-0.0018036	-3.362	-0.0023412	696.3653518199142	55.05	0.12003	55.049	55.025	55.145	-0.0006218	522	160	1.3088527	0.09521198	1.3073332	267.31628	0	19.445831						270	6	3	NaN	NaN	NaN	0.84692	1	3084	3084		1.4396	0.19772	1	33879	+		17958	11374	10292	10618	14279	14279					0.00037313083339540754
NAAFKDVAL	9	Unmodified	_NAAFKDVAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.514907826	1	948.514908	947.507631	1.4535	0.0013787	-1.2592	-0.0011943	0.19436	0.00018435	948.5137779281416	20.597	0.072229	20.597	20.573	20.646	0	228	40	1.4837929	0.023084521	1.4837929	301.48383	0	4.690399						64	4	2	NaN	NaN	NaN	0.077759	1	7026	7026		39.039	11.743	1	5137.3			17959	3413	10293	10619	14280	14280					0.031777848974684275
NAAFKDVAL	9	Unmodified	_NAAFKDVAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.7610921463	2	474.761092	947.507631	1.3482	0.00064007	-0.31969	-0.00015178	1.0285	0.00048829	474.76100769219806	20.597	0.24095	20.597	20.573	20.814	0	1332	52	0.8172735	0.03140533	0.8172735	332.10968	0	12.761963						324	11	4	NaN	NaN	NaN	0.064504	1	7027	7027		40.957	1.4981	1	121100			17960	3413	10293	10619	14281	14281					0.031777848974684275
NAAFKDVAL	9	Unmodified	_NAAFKDVAL_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.7610921463	2	474.761092	947.507631	0.75133	0.0003567	-0.73146	-0.00034727	0.019868	9.4324E-06	474.7607421445187	20.622	0.24101	20.608	20.559	20.801	-0.014088	1332	52	0.8172735	0.031401932	0.81575406	332.10968	0	12.76059						319	11	4	NaN	NaN	NaN	0.057383	1	6894	6894		43.776	16.479	1	124940			17961	3413	10293	10619	14282	14282					0.031777848974684275
NAAFKDVAL	9	Unmodified						0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.514908	947.507631	1.458	0.0013829	-1.9002	-0.0018024	-0.4422	-0.00041943	948.5131002614447	20.622	0.072323	20.608	20.584	20.656	-0.014088	228	43	1.4837929	0.024858832	1.4822735	301.48383		5.050934	0.0051006	-0.00035653	-0.00075972	NaN	39.039	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6184.9			17962	3413	10293	10619							0.031777848974684275
NAAFPDTSM	9	Unmodified	_NAAFPDTSM_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2;ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4033084661	1	953.403308	952.396032	1.8367	0.0017511	2.5826	0.0024622	4.4193	0.0042134	953.4052566986359	21.898	0.096472	21.898	21.85	21.946	0	345	40	1.4143922	0.02318275	1.4143922	287.36154	0	4.710022						75	5	2	NaN	NaN	NaN	0.13602	1	7140	7140		30.61	15.147	1	5001.1			17963	2402	10294	10620	14283	14283					-0.08207017521976923
NAAGSASS	8	Unmodified	_NAAGSASS_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	332.6484676917	2	332.648468	663.282382	1.2973	0.00043154	2.3482	0.00078111	3.6454	0.0012126	332.6500997897792	37.121	0.14478	37.121	37.072	37.217	0	1515	76	0.7042165	0.046511114	0.7042165	287.91388	0	19.015747						282	7	3	NaN	NaN	NaN	0.84727	1	2409	2409		1.2418	0	1	24281			17964	3883	10295	10621	14284	14284					-0.06272744572709144
NAAHQEALM	9	Unmodified	_NAAHQEALM_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.73200874335	2	492.732009	983.449465	1.6166	0.00079657	-0.85524	-0.00042141	0.7614	0.00037517	492.7315242474199	14.573	0.26397	14.573	14.501	14.765	0	1326	73	0.8209676	0.04433459	0.8209676	333.43646	0	18.0065						346	12	2	NaN	NaN	NaN	0.19268	1	8000	8000		25.801	5.3523	1	107710			17965	3407	10296	10622	14285	14285					-0.04292220019465276
NAAHQEALM	9	Unmodified	_NAAHQEALM_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.73200874335	2	492.732009	983.449465	0.78353	0.00038607	-0.39178	-0.00019304	0.39175	0.00019303	492.73211288847864	14.62	0.23973	14.609	14.561	14.8	-0.011218	1326	64	0.8209676	0.038794816	0.81944823	333.43643	0	15.756561						363	11	4	NaN	NaN	NaN	0.12866	1	7823	7823		31.675	11.12	1	73008			17966	3407	10296	10622	14286	14286					-0.04292220019465276
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(69)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7294660544	2	500.729466	999.444379	1.7479	0.00087524	-2.6543	-0.0013291	-0.9064	-0.00045386	500.72815594504107	12.148	0.2641	12.148	12.004	12.268	0	1326	55	0.8209676	0.033247292	0.8209676	333.36285	0	13.500458						291	12	2	NaN	NaN	NaN	0.022082	1	8556	8556		69.363	22.227	1	109710			17967	3407	10296	10623	14287	14287		382			-0.05536523882074107
NAAHQEALM	9	Oxidation (M)	_NAAHQEALM(Oxidation (M))_		NAAHQEALM(1)		NAAHQEALM(58)	0	0	1		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7294660544	2	500.729466	999.444379	1.2829	0.00064236	-0.95637	-0.00047888	0.32649	0.00016348	500.7291876574658	12.15	0.52792	12.142	11.974	12.502	-0.0081854	1326	52	0.8209676	0.031398535	0.81944823	333.36285	0	12.749725						620	23	4	NaN	NaN	NaN	0.030696	1	8369	8369		58.2	23.761	1	162110			17968	3407	10296	10623	14288	14288		382			-0.05536523882074107
NAAMVFEFL	9	Unmodified	_NAAMVFEFL_					0	0	0		ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1	ENST00000466598.5_1_3:183894781-183896942:+|nuORF	ENST00000466598.5_1_3:183894781-183896942:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5073796071001	1	1041.50738	1040.5001	1.0236	0.001066	1.0676	0.0011119	2.0912	0.002178	1041.5070459731476	35.603	0.1688	35.603	35.578	35.747	0	171	100	1.5174994	0.058449984	1.5174994	307.93735	0	11.860901						286	8	3	NaN	NaN	NaN	0.055351	1	10229	10229		44.638	8.052	1	27658			17969	4095	10297	10624	14289	14289					-0.01852690694431658
NAAMVFEFL	9	Oxidation (M)	_NAAM(Oxidation (M))VFEFL_		NAAM(1)VFEFL		NAAM(55)VFEFL	0	0	1		ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1	ENST00000466598.5_1_3:183894781-183896942:+|nuORF	ENST00000466598.5_1_3:183894781-183896942:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5022942292	1	1057.50229	1056.49502	1.2045	0.0012738	-0.1401	-0.00014815	1.0644	0.0011256	1057.50166025223	33.02	0.19287	33.018	32.945	33.138	-0.0024796	159	73	1.5245869	0.042524815	1.5230675	309.31427	0	8.627594						275	9	4	NaN	NaN	NaN	0.032764	1	10706	10706		55.494	25.895	1	27107			17970	4095	10297	10625	14290	14290		441			-0.030969945570632262
NAANIFERL	9	Unmodified	_NAANIFERL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2827230454001	2	524.282723	1046.55089	1.3168	0.00069039	-0.66267	-0.00034742	0.65415	0.00034296	524.2823574259381	24.116	0.1931	24.116	24.068	24.261	0	1290	61	0.84311575	0.036877573	0.84311575	342.147	0	14.965393						206	9	3	NaN	NaN	NaN	0.022082	1	10493	10493		69.363	27.045	1	60243			17971	2402	10298	10626	14291	14291					0.02947974674748366
NAANIFERL	9	Unmodified	_NAANIFERL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2;ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2827230454001	2	524.282723	1046.55089	1.392	0.00072983	-0.94185	-0.00049379	0.4502	0.00023603	524.2823009311755	24.14	0.19302	24.127	24.079	24.272	-0.012749	1290	58	0.84311575	0.03503555	0.8415963	342.147	0	14.2178955						243	9	3	NaN	NaN	NaN	0.024359	1	10286	10286		66.481	17.831	1	64376			17972	2402	10298	10626	14292	14292					0.02947974674748366
NAAQELATL	9	Unmodified	_NAAQELATL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4890870060002	1	930.489087	929.481811	2.0774	0.001933	-1.7873	-0.0016631	0.29006	0.0002699	930.4869633959914	23.778	0.096306	23.778	23.778	23.875	0	312	46	1.433996	0.02671802	1.433996	291.4468	0	5.4302063						60	5	2	NaN	NaN	NaN	0.44834	1	6593	6593		11.739	4.1985	1	3651.4			17973	2533	10299	10627	14293	14293					0.014248906552097651
NAAQELATL	9	Unmodified						0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.489087	929.481811	2.228	0.0020731	1.0061	0.00093614	3.2341	0.0030093	930.4898420864889	23.802	0.072338	23.789	23.765	23.837	-0.013048	306	31	1.4375578	0.017809153	1.4360384	292.17072		3.6195679	0.0053653	0.0013535	0.0010212	NaN	11.739	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3186.8			17974	2533	10299	10627							0.014248906552097651
NAAVGEPAF	9	Unmodified	_NAAVGEPAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	875.4257584677001	1	875.425758	874.418482	1.4425	0.0012628	0.57426	0.00050272	2.0168	0.0017655	875.4265874665438	21.272	0.19257	21.272	21.2	21.392	0	438	61	1.359022	0.035778046	1.359022	276.46277	0	7.2782288						299	9	3	NaN	NaN	NaN	0.042816	1	5729	5729		49.961	25	1	36428			17975	783	10300	10628	14294	14294					-0.023750500620394632
NAAVGEPAF	9	Unmodified	_NAAVGEPAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.4257584677001	1	875.425758	874.418482	1.0506	0.00091973	0.32699	0.00028626	1.3776	0.001206	875.4259543468721	21.248	0.19246	21.234	21.186	21.378	-0.014004	435	58	1.360811	0.03399098	1.3592916	276.8267	0	6.9147034						281	9	3	NaN	NaN	NaN	6.5392E-05	1	5595	5595		125.02	71.696	1	36946			17976	783	10300	10628	14295	14295					-0.023750500620394632
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.78456724259996	2	471.784567	941.554582	1.5945	0.00075228	-2.0489	-0.00096664	-0.45437	-0.00021436	471.783639851181	22.501	0.096375	22.501	22.477	22.573	0	1332	64	0.8172735	0.038790643	0.8172735	332.1397	0	15.764496						252	5	4	NaN	NaN	NaN	0.0098181	1	6858	6858		92.758	40.134	1	112080			17977	5685	10301	10629	14296	14296					0.08146644448606821
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5618580186	1	942.561858	941.554582	1.6139	0.0015212	-1.4076	-0.0013268	0.20631	0.00019446	942.561805156783	22.501	0.096375	22.501	22.477	22.573	0	267	55	1.4606913	0.032012343	1.4606913	296.81683	0	6.505005						135	5	3	NaN	NaN	NaN	0.03533	1	6859	6859		53.14	15.838	1	18042			17978	5685	10301	10629	14297	14297					0.08146644448606821
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.78456724259996	2	471.784567	941.554582	0.36493	0.00017217	-1.6699	-0.00078782	-1.305	-0.00061566	471.7838446642424	22.524	0.24122	22.511	22.462	22.704	-0.013733	1332	67	0.8172735	0.040639997	0.81575406	332.1397	0	16.516083						314	11	4	NaN	NaN	NaN	0.026443	1	6720	6720		63.765	37.65	1	112610			17979	5685	10301	10629	14298	14298					0.08146644448606821
NADAIVVKL	9	Unmodified	_NADAIVVKL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5618580186	1	942.561858	941.554582	1.5529	0.0014637	0.73896	0.00069651	2.2919	0.0021602	942.5625260683636	22.524	0.096516	22.511	22.486	22.583	-0.013733	267	55	1.4606913	0.032009006	1.4591719	296.8168	0	6.504303						136	5	3	NaN	NaN	NaN	0.01564	1	6721	6721		77.516	28.866	1	17451			17980	5685	10301	10629	14299	14299					0.08146644448606821
NADPIAKYL	9	Unmodified	_NADPIAKYL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.77419952155	2	502.7742	1003.53385	2.0908	0.0010512	-5.0468	-0.0025374	-2.956	-0.0014862	502.7727308224759	23.393	0.26526	23.393	23.32	23.586	0	1278	67	0.85049206	0.040569723	0.85049206	345.33246	0	16.47287						463	12	6	NaN	NaN	NaN	0.13196	1	8730	8730		31.198	2.7028	1	91661			17981	4847	10302	10630	14300	14300					0.032220540689422705
NADPIAKYL	9	Unmodified	_NADPIAKYL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.77419952155	2	502.7742	1003.53385	1.8313	0.00092072	-3.8277	-0.0019245	-1.9964	-0.0010037	502.7733497183623	23.416	0.28955	23.403	23.331	23.62	-0.013294	1278	73	0.85049206	0.044262707	0.8489726	345.33246	0	17.972351						467	13	5	NaN	NaN	NaN	0.057383	1	8557	8557		43.776	23.262	1	87341			17982	4847	10302	10630	14301	14301					0.032220540689422705
NADPILISL	9	Unmodified	_NADPILISL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5458736034003	1	955.545874	954.538597	0.99234	0.00094823	-0.13554	-0.00012951	0.8568	0.00081872	955.5456468886211	31.332	0.16895	31.332	31.284	31.452	0	228	151	1.4837929	0.0889138	1.4837929	301.452	0	18.064026						627	8	4	NaN	NaN	NaN	0.026469	1	7202	7202		63.731	15.728	1	171360			17983	1783	10303	10631	14302	14302					0.05950938211731227
NADPILISL	9	Unmodified	_NADPILISL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	ENSG00000110880|ENST00000261401|CORO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.5458736034003	1	955.545874	954.538597	1.3462	0.0012864	-0.81748	-0.00078114	0.52874	0.00050524	955.5450543509438	31.331	0.19304	31.326	31.277	31.47	-0.0050716	225	142	1.4855686	0.08355677	1.4840492	301.81274	0	16.975647						626	9	4	NaN	NaN	NaN	0.0042638	1	7058	7058		104.2	28.5	1	170010			17984	1783	10303	10631	14303	14303					0.05950938211731227
NADPLEVML	9	Unmodified	_NADPLEVML_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4972088513001	1	1001.49721	1000.48993	1.0287	0.0010302	0.56945	0.00057031	1.5981	0.0016005	1001.4983370439107	31.284	0.19308	31.284	31.187	31.38	0	249	61	1.4713576	0.035550356	1.4713576	298.7302	0	7.217804						241	9	3	NaN	NaN	NaN	0.012861	1	8604	8604		84.233	41.915	1	33158			17985	3388	10304	10632	14304	14304					-0.010292984196894395
NADPLEVML	9	Unmodified	_NADPLEVML_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4972088513001	1	1001.49721	1000.48993	1.1473	0.001149	-0.86965	-0.00087096	0.27767	0.00027809	1001.4977280095962	31.283	0.16893	31.277	31.205	31.374	-0.0050716	249	61	1.4713576	0.03553903	1.4698381	298.7302	0	7.215515						222	8	3	NaN	NaN	NaN	0.022082	1	8436	8436		69.363	40.868	1	25997			17986	3388	10304	10632	14305	14305					-0.010292984196894395
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.7185670171	2	473.718567	945.422581	2.0638	0.00097768	-2.9927	-0.0014177	-0.92883	-0.00044	473.71717545523796	18.125	0.33587	18.125	18.077	18.412	0	1365	91	0.7969414	0.055496275	0.7969414	323.85767	0	22.552368						569	15	4	NaN	NaN	NaN	0.12104	1	6942	6942		32.778	10.652	1	94425			17987	1373	10305	10633	14306	14306					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4298575676	1	946.429858	945.422581	2.5899	0.0024512	-1.3531	-0.0012806	1.2368	0.0011706	946.4286950633439	18.125	0.31188	18.125	18.077	18.388	0	348	145	1.412609	0.08568454	1.412609	287.02942	0	17.41034						977	14	5	NaN	NaN	NaN	0.024221	1	6943	6943		66.656	11.163	1	311760			17988	1373	10305	10633	14307	14307					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.7185670171	2	473.718567	945.422581	1.37	0.00064898	-0.86942	-0.00041186	0.50055	0.00023712	473.7180912681711	18.122	0.26396	18.108	18.06	18.324	-0.013948	1365	88	0.7969414	0.053655148	0.79542196	323.85767	0	21.804169						470	12	3	NaN	NaN	NaN	0.10945	1	6805	6805		34.454	18.991	1	88197			17989	1373	10305	10633	14308	14308					-0.052313286306457485
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4298575676	1	946.429858	945.422581	2.5924	0.0024536	-1.4914	-0.0014115	1.101	0.001042	946.4288017696636	18.122	0.40807	18.108	18.06	18.468	-0.013948	345	142	1.4143922	0.08387709	1.4128729	287.39178	0	17.04309						1044	18	5	NaN	NaN	NaN	0.012861	1	6806	6806		84.233	48.936	1	337300			17990	1373	10305	10633	14309	14309					-0.052313286306457485
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(110)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.71602432815	2	481.716024	961.417496	2.1206	0.0010215	-2.6084	-0.0012565	-0.48781	-0.00023499	481.71488046410457	14.333	0.48002	14.333	14.261	14.741	0	1362	88	0.79879075	0.053649306	0.79879075	324.53183	0	21.7966						1169	21	5	NaN	NaN	NaN	0.0012008	1	7355	7355		113.43	42.827	1	445800			17991	1373	10305	10634	14310	14310		155			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(120)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4247721897001	1	962.424772	961.417496	1.9164	0.0018444	-1.0984	-0.0010571	0.81802	0.00078728	962.4241524074354	14.333	0.38398	14.333	14.261	14.645	0	330	139	1.4233059	0.08207059	1.4233059	289.13385	0	16.672028						1298	17	5	NaN	NaN	NaN	0.00012629	1	7356	7356		121.31	48.177	1	366750			17992	1373	10305	10634	14311	14311		155			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(83)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.71602432815	2	481.716024	961.417496	2.4398	0.0011753	-2.5689	-0.0012375	-0.12919	-6.2233E-05	481.7150255979635	14.332	0.40726	14.321	14.225	14.633	-0.011218	1359	94	0.8006399	0.057343066	0.7991205	325.2831	0	23.297272						1076	18	5	NaN	NaN	NaN	0.013225	1	7210	7210		83.13	35.994	1	503230			17993	1373	10305	10634	14312	14312		155			-0.0647563249325458
NADPQAVTM	9	Oxidation (M)	_NADPQAVTM(Oxidation (M))_		NADPQAVTM(1)		NADPQAVTM(130)	0	0	1		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4247721897001	1	962.424772	961.417496	1.7644	0.0016981	-1.0602	-0.0010203	0.70425	0.00067779	962.4240609127775	14.332	0.35933	14.321	14.225	14.585	-0.011218	330	136	1.4233059	0.08028221	1.4217864	289.13385	0	16.308716						1153	16	5	NaN	NaN	NaN	2.0056E-07	1	7211	7211		134.11	63.508	1	288360			17994	1373	10305	10634	14313	14313		155			-0.0647563249325458
NADPVLLPN	9	Unmodified	_NADPVLLPN_					0	0	0		ENST00000507005.1_1_6:146350692-146480734:+|nuORF;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.75854945735	2	476.758549	951.502546	0.8421	0.00040148	-2.4255	-0.0011564	-1.5834	-0.00075488	476.75735765775215	20.622	0.12056	20.608	20.584	20.704	-0.014088	1368	64	0.7950918	0.038828433	0.79357237	323.07648	0	15.777527						182	6	3	NaN	NaN	NaN	0.33629	1	6989	6989		16.584	1.1215	1	24454			17995	3791	10306	10635	14314	14314					0.0248548103485291
NADSQFWSL	9	Unmodified	_NADSQFWSL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4792506012	1	1067.47925	1066.47197	1.7146	0.0018303	2.0612	0.0022003	3.7759	0.0040307	1067.4818673321377	29.16	0.26542	29.16	29.039	29.305	0	213	124	1.4926696	0.072696805	1.4926696	302.80225	0	14.747223						356	12	4	NaN	NaN	NaN	0.03533	1	11390	11390		53.14	12.987	1	44044			17996	1865	10307	10636	14315	14315					-0.05860297350182009
NADSSNTAL	9	Unmodified	_NADSSNTAL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.4006659292	1	892.400666	891.393389	1.1412	0.0010184	-0.070968	-6.3332E-05	1.0703	0.00095512	892.4006531438218	14.908	0.21606	14.896	14.68	14.896	-0.011738	411	58	1.3751161	0.033961892	1.3735967	279.65424	0	6.906769						273	10	3	NaN	NaN	NaN	0.097143	1	5822	5822		36.235	11.274	1	28775			17997	3588	10308	10637	14316	14316					-0.056651496552831304
NADSSVQLL	9	Unmodified	_NADSSVQLL_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4840016281001	1	946.484002	945.476725	1.8039	0.0017074	-5.8746	-0.0055602	-4.0706	-0.0038528	946.4784440444247	23.923	0.24118	23.923	23.875	24.116	0	330	139	1.4233059	0.08192241	1.4233059	289.20273	0	16.645905						585	11	3	NaN	NaN	NaN	0.012495	1	6957	6957		85.344	40.179	1	104130			17998	1158	10309	10638	14317	14317					0.0018058679257819676
NADSVEQSF	9	Unmodified	_NADSVEQSF_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4268806797002	1	996.426881	995.419604	2.0197	0.0020125	3.5868	0.003574	5.6066	0.0055865	996.4307004156362	19.226	0.096109	19.212	19.188	19.284	-0.014141	309	40	1.435777	0.023150682	1.4342575	291.52643	0	4.7006226						76	5	2	NaN	NaN	NaN	0.01564	1	8222	8222		77.516	34.521	1	6331.8			17999	4812	10310	10639	14318	14318					-0.0782888048379391
NADYVYDVM	9	Unmodified	_NADYVYDVM_					0	0	0		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.4557379670998	1	1089.45574	1088.44846	2.4552	0.0026748	0.82728	0.00090128	3.2825	0.0035761	1089.4561494536679	25.829	0.16891	25.829	25.757	25.926	0	138	55	1.5369828	0.031863213	1.5369828	311.71115	0	6.4620667						202	8	3	NaN	NaN	NaN	0.032689	1	12297	12297		55.592	32.257	1	20864			18000	868	10311	10640	14319	14319					-0.09222479179038601
NADYVYDVM	9	Unmodified	_NADYVYDVM_					0	0	0		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.4557379670998	1	1089.45574	1088.44846	1.8042	0.0019656	1.6568	0.001805	3.461	0.0037706	1089.458072902501	25.829	0.24135	25.817	25.696	25.938	-0.011602	138	58	1.5369828	0.03363514	1.5354633	311.71115	0	6.8214417						187	11	2	NaN	NaN	NaN	0.059222	1	11991	11991		42.995	12.204	1	22015			18001	868	10311	10640	14320	14320					-0.09222479179038601
NADYVYDVM	9	Oxidation (M)	_NADYVYDVM(Oxidation (M))_		NADYVYDVM(1)		NADYVYDVM(81)	0	0	1		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4506525891998	1	1105.45065	1104.44338	1.5123	0.0016717	0.39588	0.00043762	1.9081	0.0021094	1105.45015077551	21.175	0.14454	21.175	21.127	21.272	0	141	55	1.5352125	0.03186655	1.5352125	311.29565	0	6.461609						208	7	3	NaN	NaN	NaN	0.013959	1	13014	13014		80.901	42.77	1	18783			18002	868	10311	10641	14321	14321		94			-0.10466783041647432
NADYVYDVM	9	Oxidation (M)	_NADYVYDVM(Oxidation (M))_		NADYVYDVM(1)		NADYVYDVM(94)	0	0	1		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.4506525891998	1	1105.45065	1104.44338	1.2672	0.0014008	0.066525	7.354E-05	1.3337	0.0014744	1105.451673627729	21.176	0.19261	21.162	21.114	21.306	-0.014004	138	58	1.5369828	0.03363514	1.5354633	311.65463	0	6.820221						229	9	3	NaN	NaN	NaN	0.0092442	1	12664	12664		93.929	61.476	1	21364			18003	868	10311	10641	14322	14322		94			-0.10466783041647432
NAEDVQHQIL	10	Unmodified	_NAEDVQHQIL_					0	0	0		nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-4|HMMR	nc|ENSG00000072571|O75330-4|HMMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.7936518724501	2	583.793652	1165.57275	1.8514	0.0010808	-5.2565	-0.0030687	-3.4051	-0.0019879	583.790251534422	18.722	0.16795	18.708	18.612	18.78	-0.014059	1215	67	0.8891654	0.04046464	0.88764596	360.35565	0	16.399231						136	8	3	NaN	NaN	NaN	0.26962	1	14793	14793		29.547	13.321	1	21729			18004	797	10312	10642	14323	14323					-0.0034126536731946544
NAELWQVSW	9	Unmodified	_NAELWQVSW_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7747308378001	2	566.774731	1131.53491	1.4441	0.00081851	-4.4337	-0.0025129	-2.9895	-0.0016944	566.7724163460945	37.434	0.048073	37.434	37.41	37.458	0	1233	25	0.87812483	0.014728725	0.87812483	356.00638	0	5.971283						33	3	2	NaN	NaN	NaN	0.53317	1	14130	14130		8.2448	0.65722	1	2257.3			18005	3498	10313	10643	14324	14324					-0.025597315621325833
NAELWQVSW	9	Unmodified	_NAELWQVSW_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7747308378001	2	566.774731	1131.53491	2.6118	0.0014803	-3.6779	-0.0020845	-1.0661	-0.00060423	566.7750517929267	47.755	0.047939	47.755	47.707	47.755	0	1236	19	0.876284	0.011046529	0.876284	355.26007	0	4.478424						24	3	2	NaN	NaN	NaN	0.25448	1	14132	14132		21.835	1.3863	1	1160.5			18006	3498	10313	10643	14325	14325					-0.025597315621325833
NAENIFHSM	9	Unmodified	_NAENIFHSM_					0	0	0		ENST00000564685.5_1_16:70731013-70778503:-|nuORF;ENSG00000103043|ENST00000261776|VAC14	ENST00000564685.5_1_16:70731013-70778503:-|nuORF	ENST00000564685.5_1_16:70731013-70778503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7372910865001	2	531.737291	1061.46003	1.4924	0.00079355	-0.7626	-0.00040551	0.72977	0.00038805	531.738101741648	20.862	0.096447	20.862	20.838	20.935	0	1290	67	0.84311575	0.040569723	0.84311575	342.0846	0	16.460693						110	5	2	NaN	NaN	NaN	0.59509	1	11159	11159		5.6942	0.96509	1	12561			18007	1409	10314	10644	14326	14326					-0.06824237365003682
NAEPEPRSL	9	Unmodified	_NAEPEPRSL_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.75653808465	2	506.756538	1011.49852	1.7412	0.00088235	-1.0242	-0.00051901	0.71698	0.00036334	506.75585690713	14.597	0.336	14.597	14.501	14.837	0	1317	100	0.8265074	0.060963392	0.8265074	335.55798	0	24.750854						732	15	4	NaN	NaN	NaN	0.032689	1	9040	9040		55.592	2.812	1	179810			18008	4321	10315	10645	14327	14327					-0.006766084588548438
NAEPEPRSL	9	Unmodified	_NAEPEPRSL_					0	0	0		ENST00000481794.5_1_5:132099854-132112889:-|nuORF;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	ENST00000481794.5_1_5:132099854-132112889:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.75653808465	2	506.756538	1011.49852	1.286	0.00065168	-0.38315	-0.00019416	0.90283	0.00045752	506.7560642166584	14.596	0.33566	14.585	14.489	14.824	-0.011219	1314	97	0.8283535	0.05910635	0.8268341	336.30753	0	23.996918						707	15	5	NaN	NaN	NaN	0.041983	1	8866	8866		50.315	15.019	1	169950			18009	4321	10315	10645	14328	14328					-0.006766084588548438
NAESGRGQVM	10	Unmodified	_NAESGRGQVM_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7456474348501	2	524.745647	1047.47674	1.4815	0.0007774	-2.0275	-0.0010639	-0.54602	-0.00028652	524.7447466816244	12.414	0.57631	12.405	12.237	12.813	-0.0088415	1314	61	0.8283535	0.036917448	0.8268341	336.15247	0	14.981415						719	25	5	NaN	NaN	NaN	0.0094358	1	10303	10303		71.985	34.754	1	304400			18010	378	10316	10646	14329	14329					-0.045097364790763095
NAFDIAEEL	9	Unmodified	_NAFDIAEEL_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.4836672770999	1	1021.48367	1020.47639	2.5336	0.002588	1.318	0.0013463	3.8516	0.0039343	1021.4835487014401	29.787	0.19307	29.787	29.715	29.908	0	243	85	1.4749115	0.049728274	1.4749115	299.372	0	10.093658						317	9	3	NaN	NaN	NaN	0.011693	1	9377	9377		87.778	23.82	1	36451			18011	781	10317	10647	14330	14330					-0.03302832927295185
NAFDIAEEL	9	Unmodified	_NAFDIAEEL_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.4836672770999	1	1021.48367	1020.47639	1.3754	0.0014049	0.52689	0.00053821	1.9023	0.0019431	1021.4819067250705	29.786	0.1689	29.779	29.731	29.9	-0.0070648	243	73	1.4749115	0.042628646	1.473392	299.37204	0	8.652618						226	8	2	NaN	NaN	NaN	0.015029	1	9185	9185		78.289	33.651	1	31270			18012	781	10317	10647	14331	14331					-0.03302832927295185
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2878680028001	2	615.287868	1228.56118	1.4001	0.00086145	-1.0328	-0.00063548	0.36726	0.00022597	615.2873792201545	32.37	0.36196	32.37	32.249	32.611	0	1164	118	0.9204082	0.071620524	0.9204082	372.7938	0	29.008545						1416	16	5	NaN	NaN	NaN	0.043578	1	17201	17201		51.467	22.972	1	1181800			18013	2060	10318	10648	14332	14332					-0.043955071813115865
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.2878680028001	2	615.287868	1228.56118	0.24012	0.00014774	0.74302	0.00045717	0.98314	0.00060491	615.2886053416363	33.745	0.072392	33.745	33.721	33.793	0	1170	91	0.91673553	0.055107534	0.91673553	371.30624	0	22.320282						184	4	3	NaN	NaN	NaN	0.50669	1	17202	17202		18.233	4.1919	1	19981			18014	2060	10318	10648	14333	14333					-0.043955071813115865
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.568459539	1	1229.56846	1228.56118	2.3417	0.0028792	-0.29255	-0.00035971	2.0491	0.0025195	1229.56809066095	32.37	0.2413	32.37	32.321	32.563	0	66	130	1.579413	0.07598472	1.579413	319.8585	0	15.388245						476	11	4	NaN	NaN	NaN	0.025235	1	17203	17203		59.273	24.834	1	58402			18015	2060	10318	10648	14334	14334					-0.043955071813115865
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.2878680028001	2	615.287868	1228.56118	1.3089	0.00080535	-1.541	-0.00094817	-0.23212	-0.00014282	615.2866645528634	32.369	0.41025	32.365	32.292	32.703	-0.0037613	1161	118	0.9222442	0.071620524	0.92072475	373.53745	0	29.008545						1647	18	5	NaN	NaN	NaN	0.03503	1	16503	16503		53.652	19.213	1	1292100			18016	2060	10318	10648	14335	14335					-0.043955071813115865
NAFEDSFSSIL	11	Unmodified	_NAFEDSFSSIL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.568459539	1	1229.56846	1228.56118	1.1913	0.0014648	0.58622	0.0007208	1.7775	0.0021856	1229.5691040061624	32.344	0.12067	32.341	32.316	32.437	-0.0037613	63	157	1.5811787	0.09194219	1.5796592	320.21603	0	18.619873						415	6	4	NaN	NaN	NaN	0.00024841	1	16504	16504		80.241	42.938	1	55903			18017	2060	10318	10648	14336	14336					-0.043955071813115865
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.25838228185	2	520.258382	1038.50221	1.499	0.00077986	-1.0359	-0.00053896	0.46304	0.0002409	520.2577487807906	32.9	0.28963	32.9	32.852	33.142	0	1260	127	0.8615505	0.07740116	0.8615505	349.66324	0	31.413513						666	13	5	NaN	NaN	NaN	0.019103	1	10127	10127		73.133	31.348	1	245520			18018	1855	10319	10649	14337	14337					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5094880970998	1	1039.50949	1038.50221	1.0942	0.0011375	-0.35903	-0.00037322	0.7352	0.00076425	1039.5094732104656	32.9	0.072437	32.9	32.876	32.949	0	660	97	1.2261056	0.057692528	1.2261056	248.81273	0	11.70752						163	4	3	NaN	NaN	NaN	0.013696	1	10128	10128		81.699	52.101	1	13598			18019	1855	10319	10649	14338	14338					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5094880970998	1	1039.50949	1038.50221	1.7413	0.0018101	1.2864	0.0013372	3.0277	0.0031473	1039.5106981505894	32.9	0.38616	32.9	32.852	33.238	0	126	199	1.544062	0.11696839	1.544062	313.33542	0	23.736298						1765	17	7	NaN	NaN	NaN	0.012495	1	10132	10132		85.344	43.027	1	847420			18020	1855	10319	10649	14339	14339					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.25838228185	2	520.258382	1038.50221	1.4458	0.00075219	-1.7786	-0.00092536	-0.33284	-0.00017316	520.2575635476852	32.899	0.31348	32.897	32.849	33.162	-0.0024757	1257	124	0.86339295	0.07555419	0.8618735	350.41098	0	30.66391						757	14	5	NaN	NaN	NaN	0.02857	1	9920	9920		60.982	19.197	1	258240			18021	1855	10319	10649	14340	14340					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5094880970998	1	1039.50949	1038.50221	1.0435	0.0010847	0.8661	0.00090032	1.9096	0.001985	1039.5105157669843	32.899	0.096512	32.897	32.873	32.969	-0.0024757	657	109	1.2279087	0.06491113	1.2263893	249.17865	0	13.172363						159	5	2	NaN	NaN	NaN	0.03618	1	9924	9924		52.78	24.991	1	13610			18022	1855	10319	10649	14341	14341					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5094880970998	1	1039.50949	1038.50221	1.7598	0.0018293	0.57558	0.00059832	2.3354	0.0024277	1039.5103597094446	32.899	0.4824	32.897	32.849	33.331	-0.0024757	126	196	1.544062	0.11521447	1.5425426	313.33542	0	23.380402						1451	21	4	NaN	NaN	NaN	0.017076	1	9925	9925		75.698	23.074	1	772820			18023	1855	10319	10649	14342	14342					-0.015499386850024166
NAFEELVAF	9	Unmodified	_NAFEELVAF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5094880970998	1	1039.50949	1038.50221	0.90428	0.00094001	3.0218	0.0031412	3.926	0.0040812	1039.5122020973688	34.058	0.16898	34.056	33.911	34.08	-0.0012474	129	52	1.5422925	0.030084968	1.540773	312.97632	0	6.105133						188	8	3	NaN	NaN	NaN	0.25548	1	9929	9929		21.771	6.3084	1	14896			18024	1855	10319	10649	14343	14343					-0.015499386850024166
NAFEELVAF	9	Unmodified						0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1039.50949	1038.50221	1.2701	0.0013203	1.1349	0.0011797	2.405	0.0025	1039.5108692473048	34.276	0.072365	34.276	34.228	34.3	0	129	55	1.5422925	0.031863213	1.5422925	312.97632		6.465973	0.1098	-0.0011748	0.00075972	NaN	21.771	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10143			18025	1855	10319	10649							-0.015499386850024166
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7655172097	2	527.765517	1053.51648	1.6754	0.0008842	-0.38478	-0.00020307	1.2906	0.00068113	527.7652881129785	20.814	0.2409	20.814	20.742	20.983	0	1236	103	0.876284	0.06264448	0.876284	355.57657	0	25.419739						629	11	3	NaN	NaN	NaN	0.0080618	1	10790	10790		96.341	43.561	1	254470			18026	3120	10320	10650	14344	14344					-0.008136095283816758
NAFKEITTM	9	Unmodified	_NAFKEITTM_					0	0	0		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7655172097	2	527.765517	1053.51648	1.0829	0.00057154	0.045624	2.4079E-05	1.1286	0.00059562	527.7656645830878	20.839	0.24068	20.825	20.776	21.017	-0.014086	1233	103	0.87812483	0.06264448	0.8766054	356.32352	0	25.419739						530	11	3	NaN	NaN	NaN	0.019939	1	10568	10568		72.076	33.945	1	250140			18027	3120	10320	10650	14345	14345					-0.008136095283816758
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(100)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7629745207499	2	535.762975	1069.5114	2.566	0.0013748	-1.9502	-0.0010448	0.61581	0.00032993	535.7621910537315	17.141	0.26386	17.141	17.093	17.357	0	1269	112	0.8560222	0.068175614	0.8560222	347.28775	0	27.658813						987	12	6	NaN	NaN	NaN	0.0050453	1	11537	11537		102.5	57.331	1	462700			18028	3120	10320	10651	14346	14346		350			-0.02057913391013244
NAFKEITTM	9	Oxidation (M)	_NAFKEITTM(Oxidation (M))_		NAFKEITTM(1)		NAFKEITTM(110)	0	0	1		ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	ENST00000486078.1_1_1:89325774-89329699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7629745207499	2	535.762975	1069.5114	1.9972	0.00107	-1.1111	-0.00059529	0.88609	0.00047474	535.7626290446623	17.162	0.31195	17.149	17.052	17.364	-0.013569	1269	109	0.8560222	0.06632227	0.85450274	347.28775	0	26.906921						976	14	4	NaN	NaN	NaN	0.002766	1	11254	11254		108.71	69.253	1	491660			18029	3120	10320	10651	14347	14347		350			-0.02057913391013244
NAFQGFFIL	9	Unmodified	_NAFQGFFIL_					0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153294|ENST00000283303|ADGRF4;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5512933323	1	1056.55129	1055.54402	1.584	0.0016736	4.2478	0.004488	5.8318	0.0061616	1056.555664751325	37.121	0.14472	37.121	37.048	37.193	0	99	70	1.5599792	0.04065597	1.5599792	316.49847	0	8.248505						163	7	2	NaN	NaN	NaN	0.056143	1	10898	10898		44.302	16.442	1	15879			18030	3806	10321	10652	14348	14348					0.018466617941840013
NAFQGFFIL	9	Unmodified						0	0	0		nc|ENSG00000164393|Q8IZF7-2|ADGRF2P;ENSG00000153294|ENST00000283303|ADGRF4;ENSG00000153292|ENST00000371253|ADGRF1	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.55129	1055.54402	1.7638	0.0018635	7.4927	0.0079165	9.2565	0.00978	1056.5605973887632	37.022	0.048042	37.024	37	37.048	0.0022507	90	52	1.5652816	0.03005004	1.5637622	317.57422		6.0967407	-0.048198	0.0019536	0.0018915	NaN	44.302	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4553.9			18031	3806	10321	10652							0.018466617941840013
NAGLSWPL	8	Unmodified	_NAGLSWPL_					0	0	0		ENST00000557217.5_1_14:35591409-35591562:-|nuORF;ENST00000554222.5_1_14:35591262-35591562:-|nuORF	ENST00000557217.5_1_14:35591409-35591562:-|nuORF	ENST00000557217.5_1_14:35591409-35591562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4515792877002	1	857.451579	856.444303	1.554	0.0013325	6.7643	0.0058001	8.3183	0.0071326	857.4564187780157	36.036	0.19296	36.036	35.964	36.157	0	504	52	1.3196158	0.03048098	1.3196158	268.5337	0	6.2026978						136	9	2	NaN	NaN	NaN	0.82332	1	5489	5489		6.0903	1.6772	1	8753			18032	7564	10322	10653	14349	14349					0.010338441802446141
NAGLSWPL	8	Unmodified						0	0	0		ENST00000557217.5_1_14:35591409-35591562:-|nuORF;ENST00000554222.5_1_14:35591262-35591562:-|nuORF	ENST00000557217.5_1_14:35591409-35591562:-|nuORF	ENST00000557217.5_1_14:35591409-35591562:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.451579	856.444303	1.4125	0.0012112	8.3595	0.0071679	9.772	0.008379	857.459269802494	36.059	0.12056	36.06	35.988	36.108	0.0011024	498	43	1.3232021	0.025097966	1.3216827	269.26343		5.1073	0.011853	0.00073452	0.0010334	NaN	6.0903	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5854.6			18033	7564	10322	10653							0.010338441802446141
NAGNIVVSR	9	Unmodified	_NAGNIVVSR_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2;nc|ENSG00000130558|Q99784-5|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;ENSG00000130558|ENST00000371793|OLFM1	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.26179063805006	2	465.261791	928.509028	1.2782	0.00059472	-4.4172	-0.0020551	-3.1389	-0.0014604	465.25979800979866	14.117	0.1441	14.117	14.069	14.213	0	1374	46	0.791392	0.027746618	0.791392	321.6865	0	11.278534						98	7	2	NaN	NaN	NaN	0.27236	1	6562	6562		20.688	0.23898	1	10846			18034	1513	10323	10654	14350	14350					0.041914189862382045
NAGTGPLP	8	Unmodified	_NAGTGPLP_					0	0	0			REV__ENST00000570101.5_1_16:58700792-58701185:-|nuORF	REV__ENST00000570101.5_1_16:58700792-58701185:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3780799936002	1	726.37808	725.370804	1.1029	0.00080113	4.3658	0.0031712	5.4687	0.0039723	726.3813269461281	32.996	0.12054	32.993	32.969	33.09	-0.0024757	591	55	1.26753	0.03238964	1.2660105	258.6697	0	6.609894						101	6	2	NaN	NaN	NaN	0.84876	1	3610	3610		0.39566	0	1	9030	+		18035	12819	10324	10655	14351	14351					-0.002867042622256122
NAHCYTIA	8	Unmodified	_NAHCYTIA_					0	0	0		ENSG00000214946|ENST00000437605|TBC1D26	ENSG00000214946|ENST00000437605|TBC1D26	ENSG00000214946|ENST00000437605|TBC1D26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.70271998764997	2	446.70272	891.390887	1.4205	0.00063453	2.0791	0.00092875	3.4996	0.0015633	446.7031567840911	14.98	0.14429	14.968	14.944	15.088	-0.011738	1398	31	0.77658504	0.018516839	0.7750656	315.85925	0	7.531311						72	7	2	NaN	NaN	NaN	0.80071	1	5821	5821		9.1232	0	1	4094.6			18036	5994	10325	10656	14352	14352					-0.059152765939415985
NAHDEYLQL	9	Unmodified	_NAHDEYLQL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7618204278001	2	551.76182	1101.50909	1.1019	0.000608	-3.2598	-0.0017986	-2.1579	-0.0011906	551.7596150228819	21.079	0.1445	21.079	21.031	21.175	0	1215	82	0.8891654	0.049701393	0.8891654	360.60065	0	20.156372						185	7	2	NaN	NaN	NaN	0.11656	1	12894	12894		33.425	12.977	1	25130			18037	2006	10326	10657	14353	14353					-0.0376062580442067
NAHDEYLQL	9	Unmodified	_NAHDEYLQL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7618204278001	2	551.76182	1101.50909	1.0744	0.00059279	-1.9017	-0.0010493	-0.82733	-0.00045649	551.7602350785091	21.103	0.14446	21.089	21.041	21.186	-0.014004	1212	115	0.8910048	0.06995392	0.88948536	361.34662	0	28.369781						231	7	3	NaN	NaN	NaN	0.25548	1	12559	12559		21.771	8.7682	1	25611			18038	2006	10326	10657	14354	14354					-0.0376062580442067
NAHDEYLQLL	10	Unmodified	_NAHDEYLQLL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3038524180001	2	608.303852	1214.59315	1.5973	0.00097163	-2.2556	-0.0013721	-0.65833	-0.00040046	608.3017945637641	25.756	0.1448	25.745	25.696	25.841	-0.0116	1125	103	0.9442611	0.06240809	0.94274163	382.5038	0	25.280426						303	7	3	NaN	NaN	NaN	0.10101	1	16171	16171		45.827	25.313	1	47003			18039	2006	10327	10658	14355	14355					-0.0055609470750823675
NAHDEYLQLL	10	Unmodified						0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.303852	1214.59315	1.733	0.0010542	-3.4815	-0.0021178	-1.7485	-0.0010636	608.3031357011706	25.757	0.096481	25.757	25.684	25.781	0	1125	106	0.9442611	0.06424707	0.9442611	382.5038		26.02536	0.0059367	-0.00067934	0.00075972	NaN	45.827	310	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49936			18040	2006	10327	10658							-0.0055609470750823675
NAIEDASFL	9	Unmodified	_NAIEDASFL_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.4731025908001	1	979.473103	978.465826	1.6687	0.0016344	2.3448	0.0022967	4.0134	0.0039311	979.4753692145472	27.084	0.19309	27.084	27.036	27.229	0	258	82	1.4660252	0.0480057	1.4660252	297.73862	0	9.749603						374	9	4	NaN	NaN	NaN	0.070055	1	7838	7838		40.154	16.819	1	52153			18041	4210	10328	10659	14356	14356					-0.024268155817139814
NAIEDASFL	9	Unmodified	_NAIEDASFL_					0	0	0		nc|ENSG00000163214|Q6P158-2|DHX57;ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF	nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.4731025908001	1	979.473103	978.465826	1.5125	0.0014815	2.2833	0.0022365	3.7958	0.0037179	979.4755787551571	27.084	0.24133	27.074	27.049	27.291	-0.010124	258	85	1.4660252	0.04979694	1.4645058	297.73862	0	10.113403						331	11	3	NaN	NaN	NaN	0.2345	1	7676	7676		23.118	0.99124	1	51108			18042	4210	10328	10659	14357	14357					-0.024268155817139814
NAIEFMETF	9	Unmodified	_NAIEFMETF_					0	0	0		ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.24969997	2	551.2497	1100.48485	0.75462	0.00041598	-3.9027	-0.0021513	-3.148	-0.0017354	551.2474970103317	31.476	0.12067	31.471	31.447	31.568	-0.0044155	1308	79	0.83204526	0.04795128	0.8305259	337.4395	0	19.446808						156	6	3	NaN	NaN	NaN	0.097143	1	12515	12515		36.235	15.786	1	12274			18043	4435	10329	10660	14358	14358					-0.06137602282319676
NAIEQDYRL	9	Unmodified	_NAIEQDYRL_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2;nc|ENSG00000154928|P54762-5|EPHB1;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000196411|ENST00000358173|EPHB4	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2829200106501	2	561.28292	1120.55129	1.7908	0.0010051	0.17739	9.9569E-05	1.9682	0.0011047	561.2820506155483	19.42	0.14398	19.42	19.372	19.516	0	1239	55	0.87444305	0.033143222	0.87444305	354.5555	0	13.438385						191	7	3	NaN	NaN	NaN	0.052553	1	13703	13703		45.827	7.6957	1	33629			18044	2817	10330	10661	14359	14359					-0.004166503960504997
NAIEQDYRL	9	Unmodified	_NAIEQDYRL_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2;nc|ENSG00000154928|P54762-5|EPHB1;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000196411|ENST00000358173|EPHB4	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2829200106501	2	561.28292	1120.55129	1.4797	0.00083055	-0.53346	-0.00029942	0.94627	0.00053112	561.2823023588015	19.442	0.12026	19.428	19.38	19.5	-0.014141	1239	52	0.87444305	0.03131038	0.8729236	354.5555	0	12.695221						122	6	2	NaN	NaN	NaN	0.13196	1	13299	13299		31.198	4.1516	1	32146			18045	2817	10330	10661	14360	14360					-0.004166503960504997
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.25055724975	2	483.250557	964.486562	2.4662	0.0011918	-1.0433	-0.0005042	1.4229	0.00068761	483.24998037302146	18.844	0.23998	18.844	18.82	19.06	0	1275	55	0.85233563	0.03318268	0.85233563	346.27045	0	13.480774						444	11	4	NaN	NaN	NaN	0.33039	1	7464	7464		40.154	0.69505	1	208680			18046	7990	10331	10662	14361	14361					0.002897747979545784
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4938380329	1	965.493838	964.486562	2.0047	0.0019355	-0.21073	-0.00020346	1.794	0.0017321	965.4932446162176	18.844	0.16802	18.844	18.82	18.988	0	261	46	1.4642475	0.026666999	1.4642475	297.43744	0	5.4169617						114	8	2	NaN	NaN	NaN	0.13077	1	7465	7465		58.2	13.561	1	11491			18047	7990	10331	10662	14362	14362					0.002897747979545784
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.25055724975	2	483.250557	964.486562	2.3996	0.0011596	-0.91044	-0.00043997	1.4892	0.00071965	483.2502007408299	18.89	0.28832	18.876	18.828	19.116	-0.014061	1275	61	0.85233563	0.03687364	0.8508162	346.27042	0	14.980286						472	13	4	NaN	NaN	NaN	0.078718	1	7313	7313		69.782	22.646	1	210880			18048	7990	10331	10662	14363	14363					0.002897747979545784
NAIKDYEL	8	Unmodified	_NAIKDYEL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4938380329	1	965.493838	964.486562	1.6322	0.0015758	-0.053576	-5.1727E-05	1.5786	0.0015241	965.4933007618927	18.89	0.14421	18.876	18.852	18.996	-0.014061	258	49	1.4660252	0.028443217	1.4645058	297.79855	0	5.777771						129	7	2	NaN	NaN	NaN	0.078718	1	7314	7314		69.782	17.158	1	11433			18049	7990	10331	10662	14364	14364					0.002897747979545784
NAILDLSVF	9	Unmodified	_NAILDLSVF_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5458736034001	1	991.545874	990.538597	1.4956	0.001483	1.9077	0.0018916	3.4033	0.0033746	991.5468901896661	34.371	0.16867	34.37	34.322	34.491	-0.00064468	189	88	1.5068626	0.05144143	1.5053432	305.9806	0	10.445587						373	8	4	NaN	NaN	NaN	0.02857	1	8075	8075		60.982	21.523	1	70641			18050	5375	10332	10663	14365	14365					0.04294938211717181
NAILVDTPL	9	Unmodified	_NAILVDTPL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5458736034001	1	955.545874	954.538597	1.845	0.0017629	-0.29175	-0.00027878	1.5532	0.0014842	955.5456861020417	28.026	0.16888	28.026	27.977	28.146	0	297	85	1.4428991	0.049855232	1.4428991	293.1439	0	10.128723						309	8	4	NaN	NaN	NaN	0.012495	1	7203	7203		85.344	32.72	1	77670			18051	4038	10333	10664	14366	14366					0.0595093821170849
NAILVDTPL	9	Unmodified	_NAILVDTPL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.5458736034001	1	955.545874	954.538597	1.3839	0.0013224	-1.0701	-0.0010225	0.31381	0.00029986	955.5457389247424	28.049	0.14481	28.04	27.992	28.137	-0.0089779	294	112	1.4446791	0.06589055	1.4431597	293.50555	0	13.386536						343	7	4	NaN	NaN	NaN	2.9468E-07	1	7057	7057		130.62	47.659	1	84926			18052	4038	10333	10664	14367	14367					0.0595093821170849
NAILYETVL	9	Unmodified	_NAILYETVL_					0	0	0		ENST00000565009.5_1_16:71790048-71805048:-|nuORF;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565009.5_1_16:71790048-71805048:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.5720883539	1	1035.57209	1034.56481	1.6532	0.001712	-0.35509	-0.00036772	1.2981	0.0013443	1035.5720828183923	29.329	0.14478	29.329	29.28	29.425	0	174	109	1.5157272	0.06379402	1.5157272	307.60077	0	12.94632						388	7	4	NaN	NaN	NaN	0.010404	1	9985	9985		91.563	8.6031	1	132270			18053	4506	10334	10665	14368	14368					0.04891207383184337
NAIPVDTVL	9	Unmodified	_NAIPVDTVL_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.5302235391999	1	941.530224	940.522947	1.5029	0.001415	0.43494	0.00040951	1.9378	0.0018245	941.53106475926	27.109	0.21717	27.109	27.06	27.277	0	330	127	1.4233059	0.07491815	1.4233059	289.22455	0	15.223846						404	10	4	NaN	NaN	NaN	0.070055	1	6833	6833		40.154	7.701	1	130690			18054	2876	10335	10666	14369	14369					0.05030651694653443
NAIPVDTVL	9	Unmodified	_NAIPVDTVL_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.5302235391999	1	941.530224	940.522947	1.6449	0.0015487	0.038375	3.6131E-05	1.6833	0.0015848	941.5303564287752	27.132	0.16893	27.122	27.074	27.242	-0.010126	330	109	1.4233059	0.06418812	1.4217864	289.22455	0	13.0434265						375	8	4	NaN	NaN	NaN	0.012495	1	6694	6694		85.344	38.209	1	123460			18055	2876	10335	10666	14370	14370					0.05030651694653443
NALEELGTL	9	Unmodified	_NALEELGTL_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.5044027192001	1	959.504403	958.497126	1.2271	0.0011774	1.5815	0.0015175	2.8086	0.0026949	959.5081813760963	27.977	0.096527	27.968	27.943	28.04	-0.0089798	249	100	1.4713576	0.058692336	1.4698381	298.90802	0	11.923431						258	5	3	NaN	NaN	NaN	0.054111	1	7156	7156		45.165	5.0111	1	27417			18056	4559	10336	10667	14371	14371					0.01621757452392103
NALEVEQVI	9	Unmodified	_NALEVEQVI_					0	0	0		ENST00000487257.1_2_3:57545269-57545728:+|nuORF;ENSG00000174840|ENST00000311180|PDE12	ENST00000487257.1_2_3:57545269-57545728:+|nuORF	ENST00000487257.1_2_3:57545269-57545728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5466018849	1	1014.5466	1013.53933	2.186	0.0022178	0.59823	0.00060693	2.7842	0.0028247	1014.5477401021425	22.597	0.096514	22.597	22.573	22.67	0	225	46	1.4855686	0.026630163	1.4855686	301.56268	0	5.405792						86	5	2	NaN	NaN	NaN	0.022082	1	9132	9132		69.363	0.13021	1	6730.6			18057	4961	10337	10668	14372	14372					0.033097328607595955
NALEVEQVI	9	Unmodified						0	0	0		ENST00000487257.1_2_3:57545269-57545728:+|nuORF;ENSG00000174840|ENST00000311180|PDE12	ENST00000487257.1_2_3:57545269-57545728:+|nuORF	ENST00000487257.1_2_3:57545269-57545728:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.5466	1013.53933	1.9071	0.0019348	0.97838	0.00099262	2.8855	0.0029274	1014.5473912555454	22.597	0.072346	22.583	22.559	22.631	-0.01354	225	43	1.4855686	0.02485621	1.4840492	301.56268		5.0456543	-0.0070611	0.00022183	-0.00075972	NaN	69.363	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6554.9			18058	4961	10337	10668							0.033097328607595955
NALHLAAK	8	Unmodified	_NALHLAAK_					0	0	0		nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24;nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.4941128044	1	837.494113	836.486836	0.91833	0.0007691	-7.7382	-0.0064807	-6.8199	-0.0057116	837.4880878014711	39.863	0.21693	39.863	39.742	39.959	0	519	49	1.310647	0.028704882	1.310647	266.80914	0	5.8434753						187	10	2	NaN	NaN	NaN	0.8439	1	5226	5226		3.1533	0	1	19508			18059	28	10338	10669	14373	14373					0.062052393084513824
NALSGHGV	8	Unmodified	_NALSGHGV_					0	0	0		tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3842280040002	1	754.384228	753.376952	0.027075	2.0425E-05	1.1784	0.00088897	1.2055	0.0009094	754.3847282121851	56.803	0.072075	56.802	56.778	56.85	-0.00056458	432	46	1.3625998	0.026829243	1.3610804	277.87927	0	5.471344						64	4	2	NaN	NaN	NaN	0.84692	1	4045	4045		1.4396	0	1	6658			18060	13776	10339	10670	14374	14374					-0.009601860307043353
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.72130667130006	2	496.721307	991.42806	1.1485	0.00057047	-2.6343	-0.0013085	-1.4858	-0.00073802	496.71987165482244	19.418	0.16835	19.404	19.356	19.524	-0.014141	1296	40	0.8394264	0.023982108	0.83790696	340.89563	0	9.739258						144	8	2	NaN	NaN	NaN	0.46215	1	8083	8083		11.17	3.63	1	20466			18061	5669	10340	10671	14375	14375					-0.06799649838819732
NAMEDAQTL	9	Unmodified	_NAMEDAQTL_					0	0	0		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4353368760002	1	992.435337	991.42806	1.736	0.0017229	0.78106	0.00077516	2.5171	0.002498	992.4358537310237	19.418	0.19242	19.404	19.356	19.549	-0.014141	255	52	1.4678029	0.030219316	1.4662834	298.04553	0	6.1362						192	9	2	NaN	NaN	NaN	0.010878	1	8084	8084		90.252	53.665	1	23051			18062	5669	10340	10671	14376	14376					-0.06799649838819732
NAMEDAQTL	9	Oxidation (M)	_NAM(Oxidation (M))EDAQTL_		NAM(1)EDAQTL		NAM(56)EDAQTL	0	0	1		nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525|ANXA4	nc|ENSG00000196975|P09525|ANXA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4302514981002	1	1008.43025	1007.42298	2.8564	0.0028805	-1.2511	-0.0012616	1.6054	0.0016189	1008.4296301596207	15.963	0.047864	15.951	15.927	15.975	-0.012611	270	43	1.458913	0.024895787	1.4573935	296.17587	0	5.054138						52	3	2	NaN	NaN	NaN	0.032021	1	8689	8689		56.466	34.631	1	3992.6			18063	5669	10340	10672	14377	14377		579			-0.08043953701428563
NANHPDFPM	9	Unmodified	_NANHPDFPM_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.72418371125	2	521.724184	1041.43381	1.6175	0.00084389	-0.53074	-0.0002769	1.0868	0.00056699	521.7235543372841	19.178	0.14422	19.164	19.116	19.26	-0.014141	1308	40	0.83204526	0.023995101	0.8305259	337.676	0	9.738129						126	7	3	NaN	NaN	NaN	0.44082	1	10045	10045		12.049	5.7985	1	10885			18064	5678;276	10341	10673	14378	14378					-0.08524506536514309
NANPLIYQR	9	Unmodified	_NANPLIYQR_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000569299.1_1_16:66968069-66968324:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7959975961501	2	544.795998	1087.57744	1.7927	0.00097665	-4.1336	-0.002252	-2.3409	-0.0012753	544.7937888070239	17.354	0.096035	17.34	17.292	17.388	-0.013569	1293	76	0.84127116	0.04608953	0.8397517	341.23117	0	18.694519						121	5	2	NaN	NaN	NaN	0.33629	1	11982	11982		16.584	7.6222	1	11303			18065	4499	10342	10674	14379	14379					0.03715663566094918
NAPDAEVTM	9	Oxidation (M)	_NAPDAEVTM(Oxidation (M))_		NAPDAEVTM(1)		NAPDAEVTM(64)	0	0	1			REV__ENSG00000131126|ENST00000598265|TEX101	REV__ENSG00000131126|ENST00000598265|TEX101	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4087877745002	1	963.408788	962.401511	1.3765	0.0013261	0.15399	0.00014836	1.5305	0.0014745	963.409048715929	15.172	0.21613	15.16	15.064	15.28	-0.012202	327	61	1.425088	0.03564489	1.4235686	289.49167	0	7.2408752						180	10	2	NaN	NaN	NaN	0.026469	1	7232	7232		63.731	35.942	1	15115	+		18066	9509	10343	10675	14380	14380		649			-0.08119338730148229
NAQKEIATL	9	Unmodified	_NAQKEIATL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.27710635125	2	494.277106	986.53966	2.0768	0.0010265	-1.5865	-0.00078416	0.49035	0.00024237	494.27643537947836	16.686	0.14397	16.686	16.638	16.782	0	1272	49	0.854179	0.029492497	0.854179	346.91028	0	11.977875						322	7	4	NaN	NaN	NaN	0.028569	1	8106	8106		60.984	11.022	1	133190			18067	547	10344	10676	14381	14381					0.04585152580614249
NAQKEIATL	9	Unmodified	_NAQKEIATL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.27710635125	2	494.277106	986.53966	1.5473	0.00076477	-0.67373	-0.00033301	0.87352	0.00043176	494.27685148716034	16.706	0.26361	16.693	16.621	16.885	-0.013294	1272	67	0.854179	0.04056537	0.8526596	346.91028	0	16.474915						453	12	4	NaN	NaN	NaN	0.010878	1	7940	7940		90.252	37.111	1	158890			18068	547	10344	10676	14382	14382					0.04585152580614249
NASAGEWLL	9	Unmodified	_NASAGEWLL_					0	0	0		ENST00000311922.3_1_8:126442772-126443111:+|nuORF	ENST00000311922.3_1_8:126442772-126443111:+|nuORF	ENST00000311922.3_1_8:126442772-126443111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4785223197001	1	960.478522	959.471246	1.3353	0.0012826	-0.72173	-0.00069321	0.61362	0.00058936	960.4764151138208	29.015	0.096579	29.015	28.991	29.087	0	306	46	1.4375578	0.026712418	1.4375578	292.03738	0	5.4265747						62	5	2	NaN	NaN	NaN	0.21199	1	7314	7314		24.562	2.727	1	4320.3			18069	6452	10345	10677	14383	14383					-0.010110919992371237
NASAGEWLL	9	Unmodified						0	0	0		ENST00000311922.3_1_8:126442772-126443111:+|nuORF	ENST00000311922.3_1_8:126442772-126443111:+|nuORF	ENST00000311922.3_1_8:126442772-126443111:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	960.478522	959.471246	1.8462	0.0017733	-0.93703	-0.00089999	0.90921	0.00087327	960.4767806351051	29.014	0.096529	29.007	28.982	29.079	-0.0077209	300	37	1.4411188	0.021366477	1.4395994	292.7608		4.340576	-0.0042504	-8.2224E-05	0.0010208	NaN	24.562	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3850.6			18070	6452	10345	10677							-0.010110919992371237
NASEDRLEL	9	Unmodified	_NASEDRLEL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7592777388501	2	523.759278	1045.504	2.2555	0.0011813	-2.6936	-0.0014108	-0.43812	-0.00022947	524.2600608872254	18.556	0.2878	18.556	18.508	18.796	0	1278	76	0.85049206	0.046114445	0.85049206	345.1449	0	18.71405						444	13	4	NaN	NaN	NaN	0.077759	1	10437	10437		39.039	7.3637	1	92167			18071	4974	10346	10678	14384	14384					-0.01692929667046883
NASEDRLEL	9	Unmodified	_NASEDRLEL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7592777388501	2	523.759278	1045.504	1.9976	0.0010462	0.48802	0.0002556	2.4856	0.0013018	523.7594813865823	18.602	0.28793	18.588	18.516	18.804	-0.014059	1278	73	0.85049206	0.044267476	0.8489726	345.14487	0	17.964539						480	13	4	NaN	NaN	NaN	0.057383	1	10228	10228		43.776	6.5447	1	126960			18072	4974	10346	10678	14385	14385					-0.01692929667046883
NASPRGGR	8	Unmodified	_NASPRGGR_					0	0	0		ENST00000569430.6_3_16:28505449-28506076:-|nuORF	ENST00000569430.6_3_16:28505449-28506076:-|nuORF	ENST00000569430.6_3_16:28505449-28506076:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.71755030990005	2	407.71755	813.420548	1.1763	0.00047959	-10.695	-0.0043607	-9.5191	-0.0038811	407.71340060122134	14.981	0.14414	14.981	14.933	15.077	0	1572	46	0.6688489	0.027949154	0.6688489	272.4351	0	11.384247						184	7	3	NaN	NaN	NaN	0.6053	1	4932	4932		24.961	8.5444	1	22759			18073	7641	10347	10679	14386	14386					0.0063742346643493875
NASQLITQR	9	Unmodified	_NASQLITQR_					0	0	0		ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7856298751	2	515.78563	1029.55671	1.7392	0.00089707	-2.6942	-0.0013896	-0.95498	-0.00049256	515.7842504518767	15.005	0.096075	15.005	14.981	15.077	0	1302	58	0.8357362	0.03506595	0.8357362	339.22498	0	14.233246						158	5	3	NaN	NaN	NaN	0.032021	1	9764	9764		56.466	32.065	1	19872			18074	5995	10348	10680	14387	14387					0.04311073186408976
NASQLITQR	9	Unmodified	_NASQLITQR_					0	0	0		ENST00000544888.5_1_12:7077022-7079603:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	ENST00000544888.5_1_12:7077022-7079603:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7856298751	2	515.78563	1029.55671	1.033	0.00053283	-1.8923	-0.00097603	-0.85926	-0.0004432	515.7846013442725	15.004	0.16829	14.992	14.968	15.136	-0.011738	1302	61	0.8357362	0.036913514	0.8342168	339.22498	0	14.983154						174	8	3	NaN	NaN	NaN	0.27507	1	9569	9569		20.513	6.5645	1	20755			18075	5995	10348	10680	14388	14388					0.04311073186408976
NASRDVVTL	9	Unmodified	_NASRDVVTL_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5265351448	1	974.526535	973.519259	1.6893	0.0016463	-0.85595	-0.00083414	0.83339	0.00081216	974.5292472426374	29.015	0.024157	29.015	29.015	29.039	0	273	52	1.4571344	0.030225873	1.4571344	295.95386	0	6.1390686						49	2	2	NaN	NaN	NaN	0.35794	1	7705	7705		15.463	0.28729	1	6657.3			18076	2824	10349	10681	14389	14389					0.03143981920800343
NASSVTRPSHY	11	Unmodified	_NASSVTRPSHY_					0	0	0			REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.7967258776501	2	609.796726	1217.5789	1.5739	0.00095976	-8.0343	-0.0048993	-6.4604	-0.0039395	609.7917239429555	15.99	0.40776	15.99	15.774	16.182	0	1173	97	0.91489893	0.058743358	0.91489893	370.59952	0	23.795258						829	18	4	NaN	NaN	NaN	0.14414	1	16928	16928		35.523	8.4765	1	184010	+		18077	11490	10350	10682	14390	14390					-0.02118747135796184
NASSVTRPSHY	11	Unmodified	_NASSVTRPSHY_					0	0	0			REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.7967258776501	2	609.796726	1217.5789	1.9315	0.0011778	-7.9703	-0.0048603	-6.0388	-0.0036825	609.7919099170856	16.107	0.47922	16.094	15.783	16.262	-0.012611	1173	82	0.91489893	0.04955131	0.9133795	370.59952	0	20.071838						924	21	5	NaN	NaN	NaN	0.12578	1	16252	16252		37.231	8.7356	1	208430	+		18078	11490	10350	10682	14391	14391					-0.02118747135796184
NASSVTRPSHY	11	Unmodified						0	0	0			REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.796726	1217.5789	1.5739	0.00095976	-8.0343	-0.0048993	-6.4604	-0.0039395	609.7917239429555	15.99	0.40776	15.99	15.774	16.182	0	1173	97	0.91489893	0.058743358	0.91489893	370.59952		23.795258	-0.052274	-4.8384E-05	0.00075972	NaN	37.231	829	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184010	+		18079	11490	10350	10682							-0.02118747135796184
NASSVTRPSHY	11	Unmodified						0	0	0			REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	REV__ENST00000236938.10_1_1:161681190-161681763:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.796726	1217.5789	1.9315	0.0011778	-7.9703	-0.0048603	-6.0388	-0.0036825	609.7919099170856	16.107	0.47922	16.094	15.783	16.262	-0.012611	1173	82	0.91489893	0.04955131	0.9133795	370.59952		20.071838	0.052274	2.9692E-05	-0.00075972	NaN	37.231	924	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208430	+		18080	11490	10350	10682							-0.02118747135796184
NASTDYDL	8	Unmodified	_NASTDYDL_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.3788678545999	1	898.378868	897.371591	1.9854	0.0017836	-0.23673	-0.00021268	1.7487	0.001571	898.3784507050939	19.204	0.35993	19.204	19.156	19.516	0	417	79	1.3715409	0.046491504	1.3715409	278.89893	0	9.453918						458	16	3	NaN	NaN	NaN	0.025519	1	6015	6015		89.256	33.762	1	127740			18081	1222	10351	10683	14392	14392					-0.08119954403866814
NASTDYDL	8	Unmodified	_NASTDYDL_					0	0	0		ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF;ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENST00000417615.1_1_14:99439218-99439536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.3788678545999	1	898.378868	897.371591	1.8792	0.0016882	-0.066351	-5.9608E-05	1.8128	0.0016286	898.3784927092069	19.226	0.4328	19.212	19.14	19.573	-0.014141	414	82	1.3733286	0.04827714	1.3718091	279.26245	0	9.817017						635	19	3	NaN	NaN	NaN	0.01298	1	5904	5904		113.18	49.225	1	148850			18082	1222	10351	10683	14393	14393					-0.08119954403866814
NASVIIIIR	9	Unmodified	_NASVIIIIR_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.82148406515	2	499.821484	997.628415	1.9982	0.00099876	-2.5611	-0.0012801	-0.56283	-0.00028132	499.82014258584326	23.393	0.048199	23.393	23.369	23.417	0	1263	31	0.85970795	0.018426836	0.85970795	349.1024	0	7.482605						43	3	2	NaN	NaN	NaN	0.44082	1	8503	8503		12.049	2.3027	1	4425.6			18083	3472	10352	10684	14394	14394					0.1295061261093906
NASVIIIIR	9	Unmodified						0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	499.821484	997.628415	2.6554	0.0013272	-1.6275	-0.00081346	1.0279	0.00051378	499.82176886253035	23.416	0.048269	23.403	23.379	23.427	-0.013294	1260	25	0.8615505	0.014739871	0.8600311	349.85062		5.985443	0.0051804	0.00058752	0.00016157	NaN	12.049	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2419			18084	3472	10352	10684							0.1295061261093906
NATDIAEGKI	10	Unmodified	_NATDIAEGKI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2720209733501	2	516.272021	1030.52949	2.0027	0.0010339	1.3328	0.0006881	3.3355	0.001722	516.2727382322615	17.45	0.048044	17.436	17.412	17.46	-0.013569	1296	43	0.8394264	0.025828242	0.83790696	340.71857	0	10.483551						60	3	3	NaN	NaN	NaN	0.72369	1	9598	9598		6.4299	0.73577	1	4965.7	+		18085	9503	10353	10685	14395	14395					0.01544544855391905
NATDIAEGKI	10	Unmodified						0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.272021	1030.52949	2.1208	0.0010949	4.5665	0.0023576	6.6873	0.0034525	516.275854216125	17.477	0.16782	17.477	17.405	17.573	0	1290	58	0.84311575	0.035054564	0.84311575	342.21603		14.228455	0.02046	0.0016798	0.0026044	NaN	6.4299	126	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10463	+		18086	9503	10353	10685							0.01544544855391905
NATDIAEGKI	10	Unmodified						0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.272021	1030.52949	2.0027	0.0010339	1.3328	0.0006881	3.3355	0.001722	516.2727382322615	17.45	0.048044	17.436	17.412	17.46	-0.013569	1296	43	0.8394264	0.025828242	0.83790696	340.71857		10.483551	-0.02046	-0.0016591	-0.0026044	NaN	6.4299	60	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4965.7	+		18087	9503	10353	10685							0.01544544855391905
NATGAPCV	8	Unmodified	_NATGAPCV_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3345006194	1	732.334501	731.327224	1.7868	0.0013085	5.6565	0.0041425	7.4433	0.005451	732.3386873701783	23.417	0.19292	23.417	23.369	23.562	0	591	109	1.26753	0.06480014	1.26753	258.63065	0	13.222031						379	9	3	NaN	NaN	NaN	0.75561	1	3767	3767		15.175	1.1338	1	47932	+		18088	9812	10354	10686	14396	14396					-0.049186370310280836
NATGAPCV	8	Unmodified	_NATGAPCV_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.3345006194	1	732.334501	731.327224	1.9174	0.0014042	5.4907	0.004021	7.4081	0.0054252	732.338612476519	23.416	0.21715	23.403	23.379	23.596	-0.013294	588	97	1.2693287	0.057587862	1.2678093	258.99768	0	11.750397						311	10	3	NaN	NaN	NaN	0.81756	1	3694	3694		6.8632	2.8947	1	41049	+		18089	9812	10354	10686	14397	14397					-0.049186370310280836
NATGAPCV	8	Unmodified						0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	732.334501	731.327224	1.7868	0.0013085	5.6565	0.0041425	7.4433	0.005451	732.3386873701783	23.417	0.19292	23.417	23.369	23.562	0	591	109	1.26753	0.06480014	1.26753	258.63065		13.222031	0.0068578	6.6653E-05	-0.00013966	NaN	15.175	379	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47932	+		18090	9812	10354	10686							-0.049186370310280836
NATGAPCV	8	Unmodified						0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	732.334501	731.327224	1.9174	0.0014042	5.4907	0.004021	7.4081	0.0054252	732.338612476519	23.416	0.21715	23.403	23.379	23.596	-0.013294	588	97	1.2693287	0.057587862	1.2678093	258.99768		11.750397	-0.0068578	-5.4755E-05	0.00013966	NaN	15.175	311	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41049	+		18091	9812	10354	10686							-0.049186370310280836
NATGPDLEF	9	Unmodified	_NATGPDLEF_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4418024624	1	963.441802	962.434526	1.6776	0.0016162	1.4606	0.0014072	3.1382	0.0030234	963.4432224408314	24.985	0.14477	24.985	24.96	25.105	0	336	73	1.419741	0.042778492	1.419741	288.40533	0	8.690002						295	7	4	NaN	NaN	NaN	0.0073225	1	7394	7394		97.85	65.397	1	51343			18092	969	10355	10687	14398	14398					-0.048193886158060195
NATGPDLEF	9	Unmodified	_NATGPDLEF_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4418024624	1	963.441802	962.434526	1.4938	0.0014392	0.12191	0.00011745	1.6157	0.0015567	963.4423009917091	24.984	0.12064	24.972	24.924	25.044	-0.012392	336	64	1.419741	0.037433147	1.4182216	288.40533	0	7.6041565						241	6	4	NaN	NaN	NaN	0.015029	1	7237	7237		78.289	52.175	1	42040			18093	969	10355	10687	14399	14399					-0.048193886158060195
NATNVEQAF	9	Unmodified	_NATNVEQAF_					0	0	0		nc|ENSG00000233111|Q92928|RAB1C;ENSG00000174903|ENST00000311481|RAB1B	nc|ENSG00000233111|Q92928|RAB1C	nc|ENSG00000233111|Q92928|RAB1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.2354385018	2	497.235439	992.456324	1.4061	0.00069918	-2.4386	-0.0012126	-1.0325	-0.0005134	497.23407795816104	20.164	0.096367	20.15	20.126	20.222	-0.014143	1371	31	0.79324204	0.018496752	0.7917226	322.13535	0	7.5115356						86	5	3	NaN	NaN	NaN	0.12328	1	8133	8133		32.453	6.3378	1	6699.6			18094	4965	10356	10688	14400	14400					-0.040205838672363825
NATNVEQAF	9	Unmodified						0	0	0		nc|ENSG00000233111|Q92928|RAB1C;ENSG00000174903|ENST00000311481|RAB1B	nc|ENSG00000233111|Q92928|RAB1C	nc|ENSG00000233111|Q92928|RAB1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	497.235439	992.456324	1.6148	0.00080295	-0.93516	-0.00046499	0.67967	0.00033796	497.2353155058732	20.189	0.12014	20.189	20.141	20.261	0	1368	37	0.7950918	0.022196114	0.7950918	322.88654		9.013855	0.01924	0.00095676	0.0016846	NaN	32.453	102	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8871.6			18095	4965	10356	10688							-0.040205838672363825
NATNVEQSF	9	Unmodified	_NATNVEQSF_					0	0	0		nc|ENSG00000138069|P62820-3|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.23289581285	2	505.232896	1008.45124	2.0901	0.001056	-2.2061	-0.0011146	-0.11605	-5.8634E-05	505.23157660665936	18.796	0.14401	18.796	18.748	18.892	0	1377	34	0.7895419	0.020351946	0.7895419	320.5632	0	8.263123						182	7	3	NaN	NaN	NaN	0.041983	1	8912	8912		50.315	24.2	1	18248			18096	3132	10357	10689	14401	14401					-0.052648877298452135
NATNVEQSF	9	Unmodified	_NATNVEQSF_					0	0	0		nc|ENSG00000138069|P62820-3|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A;ENSG00000138069|ENST00000409784|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.23289581285	2	505.232896	1008.45124	1.5095	0.00076267	-1.6671	-0.00084226	-0.15752	-7.9585E-05	505.2323308655207	18.794	0.16817	18.78	18.731	18.9	-0.014061	1377	37	0.7895419	0.022200942	0.78802246	320.56317	0	9.013824						169	8	3	NaN	NaN	NaN	0.16939	1	8740	8740		27.296	9.4972	1	17545			18097	3132	10357	10689	14402	14402					-0.052648877298452135
NATPDSHIM	9	Unmodified	_NATPDSHIM_					0	0	0		ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.22401653575	2	493.224017	984.43348	1.6616	0.00081953	-1.5059	-0.00074277	0.15564	7.6765E-05	493.22285891433603	15.414	0.12016	15.414	15.366	15.486	0	1314	61	0.8283535	0.03692949	0.8283535	336.4316	0	14.998718						146	6	3	NaN	NaN	NaN	0.062072	1	8020	8020		41.785	19.658	1	14499			18098	4610	10358	10690	14403	14403					-0.05935926256347557
NATPDSHIM	9	Unmodified						0	0	0		ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.224017	984.43348	1.1157	0.00055031	-0.89166	-0.00043979	0.22409	0.00011053	493.223440522627	15.412	0.16787	15.4	15.352	15.52	-0.012201	1317	61	0.8265074	0.03692949	0.82498795	335.6818		14.998718	-0.0069808	0.00029109	-0.0016828	NaN	41.785	154	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16314			18099	4610	10358	10690							-0.05935926256347557
NATPDSHIM	9	Oxidation (M)	_NATPDSHIM(Oxidation (M))_		NATPDSHIM(1)		NATPDSHIM(42)	0	0	1		ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	ENSG00000168288|ENST00000303319|MMADHC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.22147384680005	2	501.221474	1000.42839	0.89436	0.00044827	0.17627	8.8348E-05	1.0706	0.00053662	501.2214987528063	12.798	0.096092	12.789	12.717	12.813	-0.00947	1335	79	0.8154261	0.048003137	0.81390667	331.10822	0	19.491943						218	5	3	NaN	NaN	NaN	0.060816	1	8420	8420		42.318	18.983	1	19725			18100	4610	10358	10691	14404	14404		492			-0.07180230118967756
NATPLTIER	9	Unmodified	_NATPLTIER_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478045.5_1_7:44801192-44807219:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7825558699	2	507.782556	1013.55056	1.4977	0.0007605	-2.0943	-0.0010635	-0.59662	-0.00030295	507.7814796268081	17.258	0.14398	17.244	17.22	17.364	-0.013567	1335	64	0.8154261	0.03878647	0.81390667	331.05008	0	15.746674						156	7	2	NaN	NaN	NaN	0.34922	1	8956	8956		15.822	7.5316	1	23118			18101	2325	10359	10692	14405	14405					0.04432554954905754
NATRDFLL	8	Unmodified	_NATRDFLL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.25871663285005	2	475.258717	948.50288	0.87369	0.00041523	-2.7991	-0.0013303	-1.9254	-0.00091508	475.2583709191948	22.573	0.096472	22.559	22.535	22.631	-0.01354	1293	40	0.84127116	0.02398467	0.8397517	341.85632	0	9.746368						74	5	2	NaN	NaN	NaN	0.63486	1	6920	6920		23.118	3.8329	1	9317			18102	1673	10360	10693	14406	14406					0.026569007547209367
NAVAGESAL	9	Unmodified	_NAVAGESAL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.4206730898001	1	831.420673	830.413397	2.2944	0.0019076	-0.55003	-0.0004573	1.7444	0.0014503	831.4202714702669	17.837	0.19188	17.837	17.789	17.981	0	486	67	1.3303722	0.039431334	1.3303722	270.8566	0	8.028015						307	9	3	NaN	NaN	NaN	0.021751	1	5140	5140		69.782	35.343	1	41740			18103	681	10361	10694	14407	14407					-0.008593539246589899
NAVAGESAL	9	Unmodified	_NAVAGESAL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000470493.1_1_13:98645409-98652946:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.4206730898001	1	831.420673	830.413397	1.8142	0.0015083	-0.39421	-0.00032776	1.4199	0.0011806	831.4206017450527	17.834	0.21593	17.82	17.796	18.012	-0.013786	486	64	1.3303722	0.037636995	1.3288528	270.8566	0	7.662689						325	10	3	NaN	NaN	NaN	0.012495	1	5024	5024		85.344	32.586	1	46843			18104	681	10361	10694	14408	14408					-0.008593539246589899
NAVDEEICL	9	Unmodified	_NAVDEEICL_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.4557379670999	1	1005.45574	1004.44846	2.2732	0.0022856	0.012893	1.2963E-05	2.2861	0.0022986	1005.4542530532466	26.07	0.1931	26.07	25.974	26.167	0	246	67	1.4731345	0.0390929	1.4731345	299.07498	0	7.9366455						400	9	4	NaN	NaN	NaN	0.024221	1	8752	8752		66.656	16.695	1	51218			18105	5162	10362	10695	14409	14409					-0.053584791790285635
NAVDEEICL	9	Unmodified	_NAVDEEICL_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.4557379670999	1	1005.45574	1004.44846	2.2619	0.0022743	-0.76155	-0.0007657	1.5004	0.0015086	1005.4548725394844	26.046	0.21724	26.035	25.962	26.18	-0.011135	246	88	1.4731345	0.051550746	1.4716152	299.07498	0	10.46582						292	10	2	NaN	NaN	NaN	0.030696	1	8579	8579		58.2	21.613	1	49954			18106	5162	10362	10695	14410	14410					-0.053584791790285635
NAVGDGIVL	9	Unmodified	_NAVGDGIVL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4727086603001	1	857.472709	856.465432	2.2285	0.0019109	-1.7451	-0.0014964	0.4834	0.0004145	857.4707586727042	25.588	0.096483	25.588	25.564	25.66	0	426	52	1.3661768	0.030406475	1.3661768	278.00848	0	6.1875						153	5	3	NaN	NaN	NaN	0.030669	1	5492	5492		58.235	16.451	1	15479			18107	2997	10363	10696	14411	14411					0.03145809489092244
NAVGDGIVL	9	Unmodified						0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.472709	856.465432	1.8304	0.0015695	0.49129	0.00042127	2.3217	0.0019908	857.4728923355099	25.612	0.096497	25.6	25.552	25.648	-0.0116	429	52	1.3643885	0.030399919	1.362869	277.64453		6.1861877	0.0061605	0.00099428	-0.0016539	NaN	58.235	133	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13324			18108	2997	10363	10696							0.03145809489092244
NAVHLYELL	9	Unmodified	_NAVHLYELL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	2.0655	0.0011077	0.82184	0.00044075	2.8873	0.0015485	536.2956097263228	26.456	0.1448	26.456	26.432	26.577	0	1215	49	0.8891654	0.029431999	0.8891654	360.72934	0	11.940399						211	7	5	NaN	NaN	NaN	0.12328	1	11595	11595		32.453	0.89171	1	34071			18109	5111	10364	10697	14412	14412					0.04358029477339187
NAVHLYELL	9	Unmodified						0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.295299	1070.57605	1.0211	0.00054763	1.5497	0.00083109	2.5708	0.0013787	536.295935421892	26.504	0.19303	26.494	26.446	26.639	-0.010645	1215	52	0.8891654	0.031276584	0.88764596	360.72934		12.688721	0.01866	0.00048121	-0.00075972	NaN	32.453	204	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30215			18110	5111	10364	10697							0.04358029477339187
NAVLFETVL	9	Unmodified	_NAVLFETVL_					0	0	0		ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556152.1_1_14:24033689-24033869:-|nuORF;ENST00000465445.6_1_14:24033375-24035332:-|nuORF;ENST00000460049.6_1_14:24033375-24036327:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	ENST00000535852.6_1_14:24028960-24035624:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5615236676	1	1005.56152	1004.55425	1.2828	0.0012899	0.62203	0.00062549	1.9048	0.0019154	1005.5613073056634	32.175	0.21717	32.172	32.123	32.341	-0.0037613	228	157	1.4837929	0.09229374	1.4822735	301.2384	0	18.737396						575	10	4	NaN	NaN	NaN	0.012495	1	8602	8602		85.344	32.565	1	181840			18111	5976	10365	10698	14413	14413					0.0521522472874949
NAVLLVETL	9	Unmodified	_NAVLLVETL_					0	0	0		nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-2|OBSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5771737318001	1	971.577174	970.569897	1.2133	0.0011788	0.52412	0.00050922	1.7374	0.0016881	971.5773496362992	30.752	0.16887	30.746	30.698	30.866	-0.0057545	225	73	1.4855686	0.042619705	1.4840492	301.74182	0	8.656708						284	8	3	NaN	NaN	NaN	0.0062755	1	7493	7493		99.986	6.514	1	63084			18112	2391	10366	10699	14414	14414					0.08343511245811897
NAVVELVTV	9	Unmodified	_NAVVELVTV_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5458736034002	1	943.545874	942.538597	1.2783	0.0012062	-5.9761	-0.0056387	-4.6977	-0.0044325	943.5429560215103	27.856	0.096586	27.846	27.822	27.919	-0.009552	282	73	1.4517976	0.042710304	1.4502782	295.00516	0	8.678741						188	5	3	NaN	NaN	NaN	0.048656	1	6753	6753		47.482	5.1639	1	24877			18113	5259	10367	10700	14415	14415					0.0650293821172454
NAVVELVTV	9	Unmodified						0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	943.545874	942.538597	1.9527	0.0018424	-0.88009	-0.0008304	1.0726	0.001012	943.5465209262419	27.615	0.02413	27.615	27.615	27.639	0	288	43	1.4482387	0.024924874	1.4482387	294.28198		5.0647583	-0.11548	0.0027741	-0.0010197	NaN	47.482	30	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1545.3			18114	5259	10367	10700							0.0650293821172454
NAVYTFETL	9	Unmodified	_NAVYTFETL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5200527834	1	1057.52005	1056.51278	1.9681	0.0020813	0.24993	0.0002643	2.218	0.0023456	1057.5206019957807	27.519	0.096554	27.519	27.446	27.543	0	153	121	1.5281296	0.07084477	1.5281296	310.03296	0	14.37323						266	5	4	NaN	NaN	NaN	0.0042638	1	10938	10938		104.2	37.542	1	68805			18115	3049	10368	10701	14416	14416					-0.013219560305742561
NAVYTFETL	9	Unmodified	_NAVYTFETL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5200527834	1	1057.52005	1056.51278	1.5144	0.0016015	0.05288	5.5922E-05	1.5673	0.0016574	1057.5206254974205	27.542	0.31369	27.533	27.484	27.798	-0.0095501	150	112	1.5299006	0.06549311	1.5283811	310.39227	0	13.287506						550	12	4	NaN	NaN	NaN	0.00012056	1	10711	10711		121.66	55.002	1	115870			18116	3049	10368	10701	14417	14417					-0.013219560305742561
NAWDKEPVL	9	Unmodified	_NAWDKEPVL_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.27710635125	2	536.277106	1070.53966	1.2326	0.00066104	-2.8766	-0.0015426	-1.6439	-0.0008816	536.7774267328596	21.778	0.19257	21.764	21.667	21.86	-0.013895	1269	94	0.8560222	0.05714482	0.85450274	347.2835	0	23.18335						412	9	4	NaN	NaN	NaN	0.061945	1	11287	11287		41.839	21.39	1	82967			18117	4753	10369	10702	14418	14418					0.007211525806042118
NAWDKEPVL	9	Unmodified						0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.277106	1070.53966	2.1372	0.0011461	-4.1238	-0.0022115	-1.9865	-0.0010653	536.2761845034978	21.778	0.21672	21.778	21.657	21.874	0	1266	103	0.85786515	0.06265801	0.85786515	348.0312		25.420013	0.0070077	-0.00062065	0.0016812	NaN	41.839	443	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89362			18118	4753	10369	10702							0.007211525806042118
NAYGGGGG	8	Unmodified	_NAYGGGGG_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.2685295442002	1	652.26853	651.261253	1.3385	0.00087305	-2.3431	-0.0015283	-1.0046	-0.00065528	652.2663015053495	28.798	0.096531	28.798	28.701	28.798	0	687	283	1.2098682	0.17036462	1.2098682	247.4228	0	34.840225						241	5	2	NaN	NaN	NaN	0.84876	1	2086	2086		0.39566	0.065779	1	21918			18119	5088	10370	10703	14419	14419					-0.07832709881552091
NCAAYVLF	8	Unmodified	_NCAAYVLF_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4284010046001	1	900.428401	899.421125	1.4182	0.001277	-0.23775	-0.00021408	1.1804	0.0010629	900.4279645741557	28.483	0.096491	28.475	28.427	28.523	-0.0083504	381	61	1.3929803	0.03570938	1.3914609	283.2488	0	7.2611694						131	5	2	NaN	NaN	NaN	0.59262	1	5937	5937		25.752	1.9013	1	11395	+		18120	10827	10371	10704	14420	14420					-0.032609179287419465
NCDDHLLKNI	10	Unmodified	_NCDDHLLKNI_					0	0	0		TNFAIP1|p.S175C|1|0.11|ENSG00000109079|chr17:28342252-28342252|C/G|missense_variant	TNFAIP1|p.S175C|1|0.11|ENSG00000109079|chr17:28342252-28342252|C/G|missense_variant	TNFAIP1|p.S175C|1|0.11|ENSG00000109079|chr17:28342252-28342252|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.52912878120003	3	395.529129	1183.56556	0.80564	0.00031866	-6.9115	-0.0027337	-6.1059	-0.002415	395.526572370712	33.673	0.072407	33.673	33.648	33.721	0	1479	25	0.72651637	0.014855325	0.72651637	441.5745	0	9.028992						37	4	2	NaN	NaN	NaN	0.70677	1	15954	15954		3.9087	1.2045	1	2320.7			18121	13720	10372	10705	14421	14421					-0.018883212394030124
NCGSYCYSSSG	11	Unmodified	_NCGSYCYSSSG_					0	0	0		ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ENSG00000163867|ENST00000357182|ZMYM6	ENST00000493328.5_1_1:35455862-35480681:-|nuORF	ENST00000493328.5_1_1:35455862-35480681:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.19205609285	2	564.192056	1126.36956	1.5716	0.00088667	0.077194	4.3552E-05	1.6488	0.00093022	564.1919007986652	36.685	0.12019	36.687	36.639	36.759	0.0016785	1242	31	0.87260187	0.018412888	0.8710824	353.78677	0	7.4653015						85	6	3	NaN	NaN	NaN	0.76654	1	13498	13498		2.5994	0.13793	1	5912.9			18122	4263	10373	10706	14422	14422					-0.18857074475636182
NCKLKKAKYV	10	Unmodified	_NCKLKKAKYV_					0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.855000919	2	597.855001	1193.69545	0.90044	0.00053833	0.77579	0.00046381	1.6762	0.0010021	597.8554134212488	31.742	0.26552	31.742	31.549	31.815	0	1125	121	0.9442611	0.073278904	0.9442611	382.579	0	29.68985						519	12	2	NaN	NaN	NaN	0.77513	1	16276	16276		1.7022	0.19679	1	120710	+		18123	11740	10374	10707	14423	14423					0.10634899830370159
NCKLKKAKYV	10	Unmodified						0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.855001	1193.69545	0.90044	0.00053833	0.77579	0.00046381	1.6762	0.0010021	597.8554134212488	31.742	0.26552	31.742	31.549	31.815	0	1125	121	0.9442611	0.073278904	0.9442611	382.579		29.68985	0.014822	0.00038061	0.00075972	NaN	1.7022	519	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120710	+		18124	11740	10374	10707							0.10634899830370159
NCKLKKAKYV	10	Unmodified						0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.855001	1193.69545	0.33028	0.00019746	-0.24635	-0.00014728	0.083927	5.0176E-05	597.8549270151871	31.717	0.1931	31.712	31.64	31.833	-0.0044155	1125	100	0.9442611	0.06046486	0.94274163	382.57904		24.498077	-0.014822	-0.00084158	-0.00075972	NaN	1.7022	535	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87175	+		18125	11740	10374	10707							0.10634899830370159
NCNGSPFA	8	Unmodified	_NCNGSPFA_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.1659703406	2	405.16597	808.317388	0.51768	0.00020974	-9.1922	-0.0037244	-8.6745	-0.0035146	405.1624354041039	35.48	0.24125	35.481	35.433	35.674	0.00052643	1422	46	0.7617651	0.027803838	0.7602457	310.31412	0	11.326233						160	11	2	NaN	NaN	NaN	0.82797	1	4765	4765		5.4659	2.3125	1	19272			18126	1651	10375	10708	14424	14424					-0.09443825036407816
NCNGSPFA	8	Unmodified						0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.16597	808.317388	0.49925	0.00020228	-8.0209	-0.0032498	-7.5216	-0.0030475	405.1630474311818	35.482	0.14474	35.482	35.458	35.603	0	1425	49	0.7599118	0.029659033	0.7599118	309.5591		12.08197	0.00047837	0.00049883	-0.00016698	NaN	5.4659	163	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16990			18127	1651	10375	10708							-0.09443825036407816
NCRIEHTPEP	10	Unmodified	_NCRIEHTPEP_					0	0	0			REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.27985439295	2	598.279854	1194.54516	0.73905	0.00044216	-0.058836	-3.52E-05	0.68022	0.00040696	598.7792905533686	29.014	0.096529	29.007	28.982	29.079	-0.0077209	1206	103	0.894683	0.062468708	0.89316356	362.48892	0	25.309784						152	5	3	NaN	NaN	NaN	0.73444	1	15654	15654		5.6942	0	1	19293	+		18128	10794	10376	10709	14425	14425					-0.04433491899226283
NCRIEHTPEP	10	Unmodified						0	0	0			REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.279854	1194.54516	1.1197	0.00066989	-2.0846	-0.0012472	-0.96491	-0.00057729	598.2787649430823	29.015	0.12071	29.015	28.991	29.112	0	1206	49	0.894683	0.029419243	0.894683	362.48892		11.919495	0.0042504	-0.00089033	0.00075972	NaN	5.6942	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15458	+		18129	10794	10376	10709							-0.04433491899226283
NCRIEHTPEP	10	Unmodified						0	0	0			REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.279854	1194.54516	0.73905	0.00044216	-0.058836	-3.52E-05	0.68022	0.00040696	598.7792905533686	29.014	0.096529	29.007	28.982	29.079	-0.0077209	1206	103	0.894683	0.062468708	0.89316356	362.48892		25.309784	-0.0042504	0.0015336	-0.00075972	NaN	5.6942	152	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19293	+		18130	10794	10376	10709							-0.04433491899226283
NCSYTVTQ	8	Unmodified	_NCSYTVTQ_					0	0	0			REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.19746743425	2	458.197467	914.380382	1.1467	0.00052541	4.4298	0.0020297	5.5765	0.0025551	458.1996622600604	28.749	0.12065	28.74	28.716	28.837	-0.0083504	1407	31	0.77102906	0.018522859	0.7695096	313.4799	0	7.530884						71	6	2	NaN	NaN	NaN	0.78967	1	6186	6186		10.605	3.0646	1	5350.1	+		18131	10368	10377	10710	14426	14426					-0.08023304039022605
NCSYTVTQ	8	Unmodified						0	0	0			REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	REV__nc|ENSG00000165124|Q4LDE5-3|SVEP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	458.197467	914.380382	1.1467	0.00052541	4.4298	0.0020297	5.5765	0.0025551	458.1996622600604	28.749	0.12065	28.74	28.716	28.837	-0.0083504	1407	31	0.77102906	0.018522859	0.7695096	313.4799		7.530884	-0.016608	0.00063591	-0.00075972	NaN	10.605	71	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5350.1	+		18132	10368	10377	10710							-0.08023304039022605
NDAVEEMVCV	10	Oxidation (M)	_NDAVEEM(Oxidation (M))VCV_		NDAVEEM(1)VCV		NDAVEEM(50)VCV	0	0	1		TTC12-LUC7L2|1|fusion;ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12	TTC12-LUC7L2|1|fusion	TTC12-LUC7L2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.7335567668	2	562.733557	1123.45256	1.7943	0.0010097	-1.062	-0.00059764	0.73224	0.00041206	562.733433234551	23.947	0.26533	23.934	23.886	24.151	-0.013048	1257	64	0.86339295	0.038681686	0.8618735	350.06412	0	15.683563						468	12	6	NaN	NaN	NaN	0.068403	1	13389	13389		50.315	9.3582	1	169380			18133	3669	10378	10711	14427	14427		411			-0.10422757747619471
NDHAPEFI	8	Unmodified	_NDHAPEFI_					0	0	0		nc|ENSG00000166589|O75309-3|CDH16;nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant;DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2	nc|ENSG00000166589|O75309-3|CDH16	nc|ENSG00000166589|O75309-3|CDH16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4315721271001	1	942.431572	941.424296	1.7212	0.0016221	4.1755	0.0039352	5.8967	0.0055572	942.4362452845211	36.204	0.14463	36.205	36.157	36.301	0.0011024	333	55	1.4215236	0.032080412	1.4200041	288.85837	0	6.51886						204	7	3	NaN	NaN	NaN	0.6053	1	6701	6701		24.961	2.8347	1	19218			18134	248	10379	10712	14428	14428					-0.04875951550366153
NDNADLLLV	9	Unmodified	_NDNADLLLV_					0	0	0			REV__PCDHB8|p.V552L|1|0.11|ENSG00000120322|chr5:141179688-141179688|G/T|missense_variant	REV__PCDHB8|p.V552L|1|0.11|ENSG00000120322|chr5:141179688-141179688|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5153017565001	1	986.515302	985.508025	1.1855	0.0011695	6.9063	0.0068132	8.0918	0.0079827	986.5244453639679	32.224	0.096531	32.22	32.196	32.292	-0.0037613	207	43	1.496219	0.024837732	1.4946996	303.84058	0	5.0438538						150	5	4	NaN	NaN	NaN	0.35794	1	7896	7896		15.463	1.4211	1	10530	+		18135	13289	10380	10713	14429	14429					0.014691598266722394
NDNADLLLV	9	Unmodified						0	0	0			REV__PCDHB8|p.V552L|1|0.11|ENSG00000120322|chr5:141179688-141179688|G/T|missense_variant	REV__PCDHB8|p.V552L|1|0.11|ENSG00000120322|chr5:141179688-141179688|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	986.515302	985.508025	1.1855	0.0011695	6.9063	0.0068132	8.0918	0.0079827	986.5244453639679	32.224	0.096531	32.22	32.196	32.292	-0.0037613	207	43	1.496219	0.024837732	1.4946996	303.84058		5.0438538	-0.014501	0.00058763	-0.00075972	NaN	15.463	150	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10530	+		18136	13289	10380	10713							0.014691598266722394
NDNDCGDG	8	Unmodified	_NDNDCGDG_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.12195676745	2	405.121957	808.229361	0.93712	0.00037965	-8.8607	-0.0035897	-7.9236	-0.00321	405.11823495833823	35.94	0.072346	35.94	35.868	35.94	0	1443	88	0.7487872	0.053771615	0.7487872	305.02795	0	21.904541						172	4	2	NaN	NaN	NaN	0.84887	1	4857	4857		0.32989	0	1	34527			18137	922	10381	10714	14430	14430					-0.18242490417674162
NDNKGYIRTF	10	Unmodified	_NDNKGYIRTF_					0	0	0		tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.87540489696664	3	409.875405	1226.60439	2.0854	0.00085475	-8.9176	-0.0036551	-6.8322	-0.0028004	409.8715630391463	19.082	0.072018	19.068	19.02	19.092	-0.014059	1377	28	0.7895419	0.016649783	0.78802246	479.6875	0	10.115631						42	4	2	NaN	NaN	NaN	0.77594	1	16461	16461		0.55697	0.17187	1	3224.9			18138	13926	10382	10715	14431	14431					0.00014727386610502435
NDPGHLLW	8	Unmodified	_NDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.2377842255001	2	476.237784	950.461016	1.1768	0.00056044	-2.3798	-0.0011334	-1.203	-0.00057292	476.23632331910403	24.188	0.12068	24.188	24.164	24.285	0	1341	61	0.8117308	0.03695345	0.8117308	329.84268	0	15.015839						145	6	3	NaN	NaN	NaN	0.69898	1	7094	7094		19.118	2.6818	1	12367			18139	6071	10383	10716	14432	14432					-0.016196549337905708
NDPGHLLW	8	Unmodified	_NDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.2377842255001	2	476.237784	950.461016	1.1195	0.00053315	-1.2205	-0.00058126	-0.10103	-4.8113E-05	476.2374768709837	24.212	0.096529	24.199	24.175	24.272	-0.012749	1341	49	0.8117308	0.029572368	0.81021136	329.84265	0	12.016571						109	5	3	NaN	NaN	NaN	0.83211	1	6963	6963		4.9097	0.49665	1	9684.3			18140	6071	10383	10716	14433	14433					-0.016196549337905708
NDPGHLLW	8	Unmodified						0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	476.237784	950.461016	2.6938	0.0012829	-6.7438	-0.0032116	-4.05	-0.0019288	476.2351452567176	24.333	0.024147	24.32	24.32	24.344	-0.012749	1380	22	0.7876915	0.012954056	0.78617203	320.07446		5.263794	0.065905	-0.0031614	-0.012779	NaN	19.118	27	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421.9			18141	6071	10383	10716							-0.016196549337905708
NDVVWHVSWS	10	Unmodified	_NDVVWHVSWS_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.79091221825	2	614.790912	1227.56727	1.5325	0.00094217	-6.7119	-0.0041264	-5.1793	-0.0031842	614.7871420678043	16.131	0.19182	16.118	16.07	16.262	-0.012995	1149	40	0.92958635	0.02385801	0.9280669	376.51462	0	9.66333						191	9	3	NaN	NaN	NaN	0.63397	1	16479	16479		12.57	0	1	16150			18142	3940	10384	10717	14434	14434					-0.03740944159153514
NDYAVVMEKEE	11	Unmodified	_NDYAVVMEKEE_					0	0	0		ENSG00000152611|ENST00000651391|CAPSL	ENSG00000152611|ENST00000651391|CAPSL	ENSG00000152611|ENST00000651391|CAPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.8675872121001	3	442.867587	1325.58093	1.6424	0.00072738	-6.3614	-0.0028173	-4.719	-0.0020899	442.8658732555568	16.994	0.095984	16.981	16.981	17.077	-0.013294	1431	37	0.75620437	0.022246659	0.7546849	459.05188	0	13.504791						74	5	2	NaN	NaN	NaN	0.75376	1	18323	18323		1.5256	0	1	6639.2			18143	3780	10385	10718	14435	14435					-0.0688349923284477
NEADQSAA	8	Unmodified	_NEADQSAA_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.332252013	1	805.332252	804.324976	1.2801	0.0010309	-1.2003	-0.00096662	0.079872	6.4323E-05	805.3318810963084	31.018	0.096556	31.018	30.994	31.091	0	522	70	1.3088527	0.04127419	1.3088527	266.616	0	8.407654						143	5	3	NaN	NaN	NaN	0.80191	1	4790	4790		8.962	2.0988	1	28964	+		18144	13115	10386	10719	14436	14436					-0.0850139423513383
NEAEPVTV	8	Unmodified	_NEAEPVTV_					0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4203387388002	1	858.420339	857.413062	1.4887	0.0012779	-0.10717	-9.1999E-05	1.3815	0.0011859	858.419963546255	20.501	0.096201	20.487	20.463	20.559	-0.014143	438	40	1.359022	0.023256898	1.3575026	276.54767	0	4.732544						83	5	2	NaN	NaN	NaN	0.5868	1	5365	5365		26.115	2.7805	1	5387	+		18145	8514	10387	10720	14437	14437					-0.021347736445022747
NEAEPVTV	8	Unmodified						0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	858.420339	857.413062	1.667	0.001431	0.11895	0.00010211	1.786	0.0015331	858.4200185656664	20.477	0.096184	20.477	20.477	20.573	0	444	37	1.3554435	0.021473646	1.3554435	275.81946		4.3696594	-0.0050438	0.00012848	-0.0010296	NaN	26.115	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4779.9	+		18146	8514	10387	10720							-0.021347736445022747
NEAEPVTV	8	Unmodified						0	0	0			REV__ENSG00000058673|ENST00000367210|ZC3H11A	REV__ENSG00000058673|ENST00000367210|ZC3H11A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	858.420339	857.413062	1.4887	0.0012779	-0.10717	-9.1999E-05	1.3815	0.0011859	858.419963546255	20.501	0.096201	20.487	20.463	20.559	-0.014143	438	40	1.359022	0.023256898	1.3575026	276.54767		4.732544	0.0050438	-6.5628E-05	0.0010296	NaN	26.115	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5387	+		18147	8514	10387	10720							-0.021347736445022747
NEAGKAGV	8	Unmodified	_NEAGKAGV_					0	0	0			REV__ENST00000588234.5_1_19:13889058-13889256:+|nuORF	REV__ENST00000588234.5_1_19:13889058-13889256:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.3838936530001	1	745.383894	744.376617	1.3016	0.0009702	5.807	0.0043284	7.1086	0.0052986	745.3876557557635	29.184	0.14479	29.184	29.16	29.305	0	564	49	1.2837118	0.028753877	1.2837118	261.84796	0	5.865143						115	7	2	NaN	NaN	NaN	0.77489	1	3972	3972		12.588	0	1	8873.3	+		18148	12899	10388	10721	14438	14438					-0.005796057505676799
NEAGKAGV	8	Unmodified						0	0	0			REV__ENST00000588234.5_1_19:13889058-13889256:+|nuORF	REV__ENST00000588234.5_1_19:13889058-13889256:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.383894	744.376617	1.3016	0.0009702	5.807	0.0043284	7.1086	0.0052986	745.3876557557635	29.184	0.14479	29.184	29.16	29.305	0	564	49	1.2837118	0.028753877	1.2837118	261.84796		5.865143	0.0042565	0.00039338	0.00075972	NaN	12.588	115	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8873.3	+		18149	12899	10388	10721							-0.005796057505676799
NEDEQIELTY	10	Unmodified	_NEDEQIELTY_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	418.52258544616666	3	418.522585	1252.54593	1.764	0.00073828	-2.7814	-0.0011641	-1.0174	-0.00042581	418.8556618494025	37.6	0.09639	37.603	37.53	37.627	0.0028267	1428	37	0.7580582	0.022239447	0.75653875	460.4535	0	13.508514						47	5	2	NaN	NaN	NaN	0.77421	1	17071	17071		0.71611	0.28393	1	2816.3	+		18150	8610	10389	10722	14439	14439					-0.0702441876917419
NEDHAAVAA	9	Unmodified	_NEDHAAVAA_					0	0	0		ENST00000525294.5_1_6:44095495-44104115:+|nuORF	ENST00000525294.5_1_6:44095495-44104115:+|nuORF	ENST00000525294.5_1_6:44095495-44104115:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.20668106234996	2	449.206681	896.398809	0.88711	0.0003985	-4.6312	-0.0020803	-3.7441	-0.0016819	449.2046744927781	28.869	0.096569	28.861	28.837	28.933	-0.0083504	1410	55	0.76917666	0.033344746	0.7676573	312.8196	0	13.561127						151	5	4	NaN	NaN	NaN	0.47587	1	5889	5889		10.605	0	1	14454			18151	7420	10390	10723	14440	14440					-0.05353426072815637
NEDHAAVAA	9	Unmodified						0	0	0		ENST00000525294.5_1_6:44095495-44104115:+|nuORF	ENST00000525294.5_1_6:44095495-44104115:+|nuORF	ENST00000525294.5_1_6:44095495-44104115:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	449.206681	896.398809	0.93545	0.00042021	-4.7354	-0.0021272	-3.7999	-0.001707	449.2051998458197	28.87	0.096542	28.87	28.846	28.943	0	1407	55	0.77102906	0.033344746	0.77102906	313.57297		13.561127	0.0045727	-5.8384E-05	0.0016859	NaN	10.605	145	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14125			18152	7420	10390	10723							-0.05353426072815637
NEESVVPIG	9	Unmodified	_NEESVVPIG_					0	0	0			REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4731025908002	1	943.473103	942.465826	1.048	0.00098873	3.023	0.0028521	4.0709	0.0038408	943.4760485086417	31.911	0.1207	31.911	31.887	32.008	0	261	52	1.4642475	0.030222535	1.4642475	297.53528	0	6.1412354						109	6	2	NaN	NaN	NaN	0.61413	1	6870	6870		4.9097	0	1	9250.4	+		18153	12305	10391	10724	14441	14441					-0.007708155816999351
NEESVVPIG	9	Unmodified						0	0	0			REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	943.473103	942.465826	1.048	0.00098873	3.023	0.0028521	4.0709	0.0038408	943.4760485086417	31.911	0.1207	31.911	31.887	32.008	0	261	52	1.4642475	0.030222535	1.4642475	297.53528		6.1412354	-0.0096585	-0.00036975	0.00075972	NaN	4.9097	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9250.4	+		18154	12305	10391	10724							-0.007708155816999351
NEESVVPIG	9	Unmodified						0	0	0			REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	REV__ENST00000466609.1_1_3:98376945-98377662:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	943.473103	942.465826	1.0472	0.00098796	3.8086	0.0035933	4.8557	0.0045813	943.4754681723206	31.934	0.16891	31.93	31.882	32.051	-0.0037613	261	46	1.4642475	0.026666999	1.462728	297.53528		5.4187317	0.0096585	0.00037146	-0.00075972	NaN	4.9097	104	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8936.3	+		18155	12305	10391	10724							-0.007708155816999351
NEEWYYFLENL	11	Unmodified	_NEEWYYFLENL_					0	0	0		tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.3406318548	2	760.340632	1518.66671	1.2153	0.00092404	-10.81	-0.0082194	-9.5949	-0.0072954	760.3325748243856	30.366	0.07238	30.359	30.311	30.383	-0.0064106	990	58	1.0265712	0.03467834	1.0250517	414.9094	0	14.015961						131	4	2	NaN	NaN	NaN	0.6678	1	19614	19614		9.5705	5.2603	1	14862			18156	13872	10392	10725	14442	14442					-0.07187591055730991
NEFFCEVDED	10	Unmodified	_NEFFCEVDED_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|522|13.99|0.0|20.42|+|ENST00000677536|CSNK2B,CSNK2B;ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENSG00000204435|ENST00000375882|CSNK2B;ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENSG00000204435|ENST00000375882|CSNK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.7320683228501	2	623.732068	1245.44958	1.7293	0.0010786	-0.67915	-0.0004236	1.0502	0.00065502	623.7319283417961	26.432	0.14481	26.432	26.384	26.529	0	1185	55	0.90755045	0.033075213	0.90755045	367.5306	0	13.39447						176	7	4	NaN	NaN	NaN	0.74854	1	17640	17640		4.7291	0	1	17931			18157	150;7108	10393	10726	14443	14443					-0.1633230960076162
NEGAADGP	8	Unmodified	_NEGAADGP_					0	0	0			REV__ENST00000589484.5_1_19:1418678-1421169:+|nuORF	REV__ENST00000589484.5_1_19:1418678-1421169:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.65375003484996	2	365.65375	729.292947	0.93683	0.00034255	3.8012	0.0013899	4.738	0.0017325	365.65517378788064	37.578	0.12037	37.578	37.53	37.65	0	1485	28	0.72280174	0.016718566	0.72280174	294.97296	0	6.8227844						66	6	2	NaN	NaN	NaN	0.84562	1	3748	3748		2.1763	0	1	5087.3	+		18158	12907	10394	10727	14444	14444					-0.08252761918276974
NEGDAYYLLKD	11	Unmodified	_NEGDAYYLLKD_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8064248966999	2	650.806425	1299.5983	1.7083	0.0011118	-4.4551	-0.0028994	-2.7468	-0.0017876	650.8060826920533	21.946	0.16871	21.946	21.874	22.043	0	1137	79	0.9369253	0.047692895	0.9369253	379.25317	0	19.30539						269	8	3	NaN	NaN	NaN	0.04842	1	18768	18768		50.238	28.388	1	31390			18159	3097	10395	10728	14445	14445					-0.039518356355984
NEGDAYYLLKD	11	Unmodified	_NEGDAYYLLKD_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8064248966999	2	650.806425	1299.5983	1.0198	0.00066371	-3.7855	-0.0024636	-2.7657	-0.0017999	651.3045759674177	21.946	0.24085	21.932	21.86	22.101	-0.013895	1140	85	0.93509084	0.051350534	0.9335714	378.51062	0	20.78595						337	11	3	NaN	NaN	NaN	0.082663	1	17939	17939		41.55	29.501	1	36444			18160	3097	10395	10728	14446	14446					-0.039518356355984
NEGDLFHRLW	10	Unmodified	_NEGDLFHRLW_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000468571.1_7:111617053-111644151:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.5473997020334	3	429.5474	1285.62037	2.0375	0.00087519	-1.764	-0.00075772	0.27348	0.00011747	429.88094815637345	25.636	0.048275	25.636	25.612	25.66	0	1404	25	0.77288127	0.014816642	0.77288127	469.3257	0	8.997284						33	3	2	NaN	NaN	NaN	0.64871	1	18529	18529		11.561	10.459	1	2311.8			18161	2569	10396	10729	14447	14447					-0.011015663764737837
NEGECPDE	8	Unmodified	_NEGECPDE_					0	0	0			REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.2989029741	1	892.298903	891.291627	1.8214	0.0016252	-3.7174	-0.0033171	-1.8961	-0.0016918	892.295589895015	12.052	0.072044	12.052	12.028	12.1	0	978	88	1.0338683	0.05293578	1.0338683	210.25583	0	10.765457						78	4	2	NaN	NaN	NaN	0.84887	1	5938	5938		0.32989	0	1	5538.4	+		18162	9956	10397	10730	14448	14448					-0.15836764069354103
NEGFLSLW	8	Unmodified	_NEGFLSLW_					0	0	0		ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4727086603001	1	965.472709	964.465432	1.885	0.0018199	0.98239	0.00094847	2.8674	0.0027684	965.4731576854031	34.589	0.072369	34.589	34.541	34.614	0	297	37	1.4428991	0.021359682	1.4428991	293.10095	0	4.338867						52	4	2	NaN	NaN	NaN	0.088943	1	7461	7461		66.656	25.196	1	3175.8			18163	5212	10398	10731	14449	14449					-0.0182219051090442
NEHHCLSVL	9	Unmodified	_NEHHCLSVL_					0	0	0			REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2531083262	2	526.253108	1050.49166	0.93384	0.00049143	-0.48594	-0.00025572	0.4479	0.00023571	526.2525805469793	29.28	0.16891	29.272	29.224	29.393	-0.0077229	1305	52	0.83389086	0.031381547	0.8323714	338.38693	0	12.7344055						146	8	2	NaN	NaN	NaN	0.53317	1	10421	10421		8.2448	1.9946	1	16043	+		18164	11835	10399	10732	14450	14450					-0.03156244611091097
NEHHCLSVL	9	Unmodified						0	0	0			REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.253108	1050.49166	1.2086	0.00063601	1.024	0.00053887	2.2325	0.0011749	526.2529615228692	29.28	0.096542	29.28	29.232	29.329	0	1323	73	0.8228144	0.044291377	0.8228144	333.89218		17.973145	0.0042524	0.0013173	-0.0047785	NaN	8.2448	140	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13359	+		18165	11835	10399	10732							-0.03156244611091097
NEHHCLSVL	9	Unmodified						0	0	0			REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	REV__ENST00000359523.6_1_1:167759109-167759259:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.253108	1050.49166	0.93384	0.00049143	-0.48594	-0.00025572	0.4479	0.00023571	526.2525805469793	29.28	0.16891	29.272	29.224	29.393	-0.0077229	1305	52	0.83389086	0.031381547	0.8323714	338.38693		12.7344055	-0.0042524	-0.00027186	0.0047785	NaN	8.2448	146	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16043	+		18166	11835	10399	10732							-0.03156244611091097
NEICTYRKNN	10	Unmodified	_NEICTYRKNN_					0	0	0			REV__nc|ENSG00000116833|O00482-3|NR5A2	REV__nc|ENSG00000116833|O00482-3|NR5A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.7984112868501	2	627.798411	1253.58227	0.86755	0.00054465	5.7202	0.0035911	6.5877	0.0041358	627.8006157421545	30.414	0.096546	30.407	30.383	30.48	-0.0064106	1146	49	0.93142134	0.029358983	0.9299019	377.17078	0	11.888641						73	5	2	NaN	NaN	NaN	0.71559	1	17102	17102		6.9844	0.12115	1	9661.5	+		18167	9233	10400	10733	14451	14451					-0.034378203534515706
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.80421655875	2	649.804217	1297.59388	1.8447	0.0011987	-2.5255	-0.0016411	-0.68076	-0.00044236	649.8024959184877	24.695	0.41019	24.695	24.623	25.033	0	1137	88	0.9369253	0.053221762	0.9369253	379.25934	0	21.543732						721	18	5	NaN	NaN	NaN	2.4882E-27	1	18730	18730		177.14	85.653	1	306920			18168	2571	10401	10734	14452	14452					-0.04301300058477864
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.80421655875	2	649.804217	1297.59388	1.542	0.001002	-1.8598	-0.0012085	-0.3178	-0.00020651	649.8027437185845	24.719	0.21709	24.707	24.658	24.875	-0.012392	1140	100	0.93509084	0.060556173	0.9335714	378.51675	0	24.512634						591	10	5	NaN	NaN	NaN	7.281200000000001E-19	1	17893	17893		155.56	93.981	1	284620			18169	2571	10401	10734	14453	14453					-0.04301300058477864
NEIKEEEI	8	Unmodified	_NEIKEEEI_					0	0	0			REV__tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	REV__tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4942319634	1	1003.49423	1002.48696	1.839	0.0018454	3.7372	0.0037503	5.5762	0.0055957	1003.4981926223763	25.105	0.072382	25.105	25.081	25.153	0	252	73	1.4695803	0.042642355	1.4695803	298.36127	0	8.65744						92	4	2	NaN	NaN	NaN	0.35353	1	8693	8693		38.918	0	1	12259	+		18170	13527	10402	10735	14454	14454					-0.014188502728529784
NEIKVYITF	9	Unmodified	_NEIKVYITF_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8107819931	2	563.810782	1125.60701	2.0494	0.0011555	-1.2221	-0.00068904	0.82731	0.00046645	563.8099532388309	26.529	0.12067	26.529	26.505	26.625	0	1173	79	0.91489893	0.04777533	0.91489893	370.9387	0	19.370148						246	6	3	NaN	NaN	NaN	0.32672	1	13921	13921		17.198	0.97258	1	57968			18171	4255	10403	10736	14455	14455					0.04923182791549152
NEISERVVQHF	11	Unmodified	_NEISERVVQHF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.34658289995	2	679.346583	1356.67861	2.1515	0.0014616	-1.4786	-0.0010045	0.67291	0.00045714	679.3446212353335	18.34	0.096073	18.34	18.316	18.412	0	1083	31	0.9699114	0.018307865	0.9699114	392.43167	0	7.4074707						69	5	3	NaN	NaN	NaN	0.052274	1	19632	19632		49.26	27.234	1	5185.4			18172	2357	10404	10737	14456	14456					0.014540704781211389
NEISERVVQHF	11	Unmodified	_NEISERVVQHF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.34658289995	2	679.346583	1356.67861	2.2231	0.0015102	-0.39693	-0.00026965	1.8261	0.0012406	679.3448175085971	18.41	0.072069	18.396	18.396	18.468	-0.013948	1083	34	0.9699114	0.020139694	0.96839195	392.43167	0	8.148651						75	4	3	NaN	NaN	NaN	0.13665	1	18740	18740		36.22	15.532	1	5400			18173	2357	10404	10737	14457	14457					0.014540704781211389
NEISYTIRAL	10	Unmodified	_NEISYTIRAL_					0	0	0		ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3220451711501	2	590.322045	1178.62954	1.2627	0.00074541	3.0964	0.0018279	4.3591	0.0025733	590.3237323172978	23.971	0.19293	23.958	23.861	24.054	-0.01305	1194	79	0.902037	0.04775989	0.9005176	365.52478	0	19.353333						267	9	3	NaN	NaN	NaN	0.68669	1	15210	15210		8.962	4.9935	1	40180			18174	4412	10405	10738	14458	14458					0.04736782189183941
NEISYTIRAL	10	Unmodified						0	0	0		ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	ENST00000553281.5_1_14:89088194-89171927:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.322045	1178.62954	1.5062	0.00088916	2.5144	0.0014843	4.0206	0.0023734	590.3230092302234	23.971	0.12063	23.971	23.923	24.044	0	1194	79	0.902037	0.04775989	0.902037	365.5248		19.353333	0.006627	-0.00030783	0.00075972	NaN	8.962	230	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31110			18175	4412	10405	10738							0.04736782189183941
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5564382896998	1	1033.55644	1032.54916	1.188	0.0012278	0.093178	9.6305E-05	1.2812	0.0013242	1033.5583207998664	30.945	0.12067	30.94	30.915	31.036	-0.0050716	150	82	1.5299006	0.04784298	1.5283811	310.4851	0	9.709503						160	6	3	NaN	NaN	NaN	0.097143	1	9684	9684		36.235	12.9	1	12188			18176	1590	10406	10739	14459	14459					0.034189208661246084
NEITIPVTF	9	Unmodified						0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1033.55644	1032.54916	1.0056	0.0010393	-1.0129	-0.0010469	-0.0073091	-7.5544E-06	1033.557587814202	30.946	0.096546	30.946	30.922	31.018	0	153	79	1.5281296	0.04606867	1.5281296	310.1257		9.349365	0.0030506	-0.00060264	-0.00012579	NaN	36.235	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12906			18177	1590	10406	10739							0.034189208661246084
NEIYQSFSQL	10	Unmodified	_NEIYQSFSQL_					0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7958602104001	2	614.79586	1227.57717	0.91124	0.00056023	-3.748	-0.0023043	-2.8368	-0.001744	614.7939627766983	20.405	0.26447	20.405	20.333	20.597	0	1176	61	0.9130621	0.036734402	0.9130621	369.8217	0	14.878693						324	12	4	NaN	NaN	NaN	0.088985	1	17182	17182		47.482	1.655	1	52086	+		18178	9195	10407	10740	14460	14460					-0.027518009444293057
NEIYQSFSQL	10	Unmodified						0	0	0			REV__ENSG00000115504|ENST00000431489|EHBP1	REV__ENSG00000115504|ENST00000431489|EHBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	614.79586	1227.57717	0.91124	0.00056023	-3.748	-0.0023043	-2.8368	-0.001744	614.7939627766983	20.405	0.26447	20.405	20.333	20.597	0	1176	61	0.9130621	0.036734402	0.9130621	369.8217		14.878693	-0.017046	0.0005156	0.0016782	NaN	47.482	324	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52086	+		18179	9195	10407	10740							-0.027518009444293057
NEKHFSVD	8	Unmodified	_NEKHFSVD_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.23015615865	2	488.230156	974.445759	1.8912	0.00092334	-10.828	-0.0052866	-8.937	-0.0043633	488.22480846839125	16.278	0.21598	16.278	16.206	16.422	0	1350	34	0.80618626	0.020334303	0.80618626	327.47476	0	8.259827						92	10	2	NaN	NaN	NaN	0.83913	1	7724	7724		3.9685	0.39873	1	5902.5	+		18180	10692	10408	10741	14461	14461					-0.04248566521664543
NELARSFS	8	Unmodified	_NELARSFS_					0	0	0			REV__nc|ENSG00000042832|P01266-2|TG	REV__nc|ENSG00000042832|P01266-2|TG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.23269884760003	2	462.232699	922.450845	1.4348	0.0006632	1.9788	0.00091465	3.4136	0.0015779	462.23268692898455	24.044	0.048225	24.044	24.019	24.068	0	1362	22	0.79879075	0.012947023	0.79879075	324.725	0	5.263214						24	3	2	NaN	NaN	NaN	0.82212	1	6445	6445		6.2502	2.2817	1	1463.2	+		18181	8467	10409	10742	14462	14462					-0.013482626590416658
NELARSFS	8	Unmodified						0	0	0			REV__nc|ENSG00000042832|P01266-2|TG	REV__nc|ENSG00000042832|P01266-2|TG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	462.232699	922.450845	1.4348	0.0006632	1.9788	0.00091465	3.4136	0.0015779	462.23268692898455	24.044	0.048225	24.044	24.019	24.068	0	1362	22	0.79879075	0.012947023	0.79879075	324.725		5.263214	0.006489	0.00088102	0.0016844	NaN	6.2502	24	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463.2	+		18182	8467	10409	10742							-0.013482626590416658
NELARSFS	8	Unmodified						0	0	0			REV__nc|ENSG00000042832|P01266-2|TG	REV__nc|ENSG00000042832|P01266-2|TG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	462.232699	922.450845	1.7433	0.00080581	0.21636	0.00010001	1.9597	0.00090582	462.23277871372034	24.043	0.048258	24.031	24.031	24.079	-0.012749	1365	34	0.7969414	0.020343125	0.79542196	323.9732		8.269897	-0.006489	-0.00074826	-0.0016844	NaN	6.2502	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2797.8	+		18183	8467	10409	10742							-0.013482626590416658
NELLQKYKSLC	11	Unmodified	_NELLQKYKSLC_					0	0	0		ENSG00000141026|ENST00000268711|MED9	ENSG00000141026|ENST00000268711|MED9	ENSG00000141026|ENST00000268711|MED9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8579375384501	2	669.857938	1337.70132	1.4115	0.0009455	-3.6791	-0.0024645	-2.2676	-0.001519	669.8565514378089	28.822	0.1689	28.822	28.75	28.918	0	1098	52	0.960755	0.031131744	0.960755	388.78256	0	12.59787						224	8	4	NaN	NaN	NaN	0.63477	1	19372	19372		11.739	2.1272	1	27064			18184	3300	10410	10743	14463	14463					0.045979535513879455
NELPGLKW	8	Unmodified	_NELPGLKW_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.76363483525006	2	478.763635	955.512717	1.3257	0.00063471	-1.7516	-0.00083858	-0.42584	-0.00020388	478.76205795271954	24.188	0.072453	24.188	24.164	24.237	0	1338	31	0.81357855	0.018478692	0.81357855	330.56857	0	7.508148						66	4	2	NaN	NaN	NaN	0.55996	1	7226	7226		27.789	9.8191	1	7299.6			18185	514	10411	10744	14464	14464					0.033180887601020004
NELPGLKW	8	Unmodified	_NELPGLKW_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.76363483525006	2	478.763635	955.512717	1.7537	0.00083958	-2.9608	-0.0014175	-1.2071	-0.00057793	478.76178742831	24.212	0.072397	24.199	24.175	24.248	-0.012749	1341	34	0.8117308	0.020325482	0.81021136	329.8178	0	8.258545						76	4	3	NaN	NaN	NaN	0.50906	1	7087	7087		30.61	7.4925	1	5884.5			18186	514	10411	10744	14465	14465					0.033180887601020004
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2432635339	2	510.243264	1018.47197	1.9663	0.0010033	-0.015135	-7.7225E-06	1.9512	0.00099559	510.2429904462996	16.494	0.095854	16.494	16.446	16.542	0	1293	46	0.84127116	0.027671635	0.84127116	341.52063	0	11.2335205						80	5	3	NaN	NaN	NaN	0.2345	1	9306	9306		23.118	6.5334	1	7303.7			18187	1527	10412	10745	14466	14466					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.2432635339	2	510.243264	1018.47197	1.6634	0.00084876	1.5531	0.00079244	3.2165	0.0016412	510.2430219393066	16.515	0.11983	16.502	16.478	16.598	-0.012993	1293	40	0.84127116	0.023982108	0.8397517	341.52063	0	9.735718						136	6	3	NaN	NaN	NaN	0.27442	1	9119	9119		20.555	1.2707	1	11158			18188	1527	10412	10745	14467	14467					-0.03652297350186018
NENNFKFEMP	10	Unmodified	_NENNFKFEMP_					0	0	0		tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.2820627309001	2	635.282063	1268.54957	1.2147	0.00077165	0.62241	0.0003954	1.8371	0.0011671	635.2819343906817	29.931	0.12064	29.925	29.876	29.997	-0.0064087	1137	61	0.9369253	0.036694765	0.93540585	379.35077	0	14.85733						153	6	3	NaN	NaN	NaN	0.77144	1	17386	17386		2.5994	0.26131	1	22443			18189	13734	10413	10746	14468	14468					-0.07396027476306699
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2745636623001	2	526.274564	1050.53457	1.1237	0.00059139	-1.9727	-0.0010382	-0.84893	-0.00044677	526.2728763306534	22.573	0.14472	22.559	22.535	22.68	-0.01354	1266	67	0.85786515	0.0405609	0.8563457	348.11536	0	16.45935						237	7	3	NaN	NaN	NaN	0.034172	1	10428	10428		53.652	18.355	1	44988			18190	170;3312	10414	10747	14469	14469					0.011328487180207958
NENSLFKSL	9	Unmodified						0	0	0		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|3|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	526.274564	1050.53457	1.6359	0.00086092	-2.1081	-0.0011095	-0.47226	-0.00024854	526.273851488692	22.549	0.12059	22.549	22.525	22.645	0	1266	82	0.85786515	0.049765885	0.85786515	348.11536		20.194641	-0.0050086	-6.1505E-05	0.00075972	NaN	53.652	230	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37019			18191	170;3312	10414	10747							0.011328487180207958
NEPNLMLEP	9	Unmodified	_NEPNLMLEP_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5030225107	1	1056.50302	1055.49575	2.152	0.0022736	-1.4818	-0.0015655	0.67019	0.00070806	1056.5022483308337	25.202	0.12066	25.202	25.153	25.274	0	189	70	1.5068626	0.040789723	1.5068626	305.72205	0	8.275696						193	6	3	NaN	NaN	NaN	0.11656	1	10874	10874		33.425	2.8152	1	15693	+		18192	8724	10415	10748	14470	14470					-0.029781999080114474
NEPNLMLEP	9	Unmodified						0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1056.50302	1055.49575	2.152	0.0022736	-1.4818	-0.0015655	0.67019	0.00070806	1056.5022483308337	25.202	0.12066	25.202	25.153	25.274	0	189	70	1.5068626	0.040789723	1.5068626	305.72205		8.275696	0.0061182	3.2234E-05	0.00075972	NaN	33.425	193	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15693	+		18193	8724	10415	10748							-0.029781999080114474
NEPNLMLEP	9	Unmodified						0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.50302	1055.49575	1.8918	0.0019987	-1.5551	-0.001643	0.33674	0.00035577	1056.5009541213662	25.201	0.14476	25.189	25.117	25.262	-0.012011	189	73	1.5068626	0.042565465	1.5053432	305.72205		8.635956	-0.0061182	-4.5196E-05	-0.00075972	NaN	33.425	192	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14951	+		18194	8724	10415	10748							-0.029781999080114474
NEPVTLHYAA	10	Unmodified	_NEPVTLHYAA_					0	0	0			REV__ENSG00000139880|ENST00000487137|CDH24	REV__ENSG00000139880|ENST00000487137|CDH24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.78001318095	2	557.780013	1113.54547	1.7149	0.00095654	-5.7785	-0.0032232	-4.0636	-0.0022666	557.7775513404393	17.234	0.14383	17.22	17.149	17.292	-0.013569	1251	46	0.8670771	0.027626812	0.8655577	351.5958	0	11.202545						123	7	3	NaN	NaN	NaN	0.67523	1	13039	13039		9.746	0	1	12974	+		18195	9781	10416	10749	14471	14471					-0.006757489077244827
NEQPRQLFW	9	Unmodified	_NEQPRQLFW_					0	0	0		ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.30672945795	2	609.306729	1216.59891	1.2865	0.00078385	-1.0767	-0.00065606	0.20973	0.00012779	609.3058074882671	23.706	0.16865	23.706	23.658	23.827	0	1224	97	0.883646	0.058819473	0.883646	357.94305	0	23.826324						209	8	3	NaN	NaN	NaN	0.10945	1	16902	16902		34.454	16.484	1	20519			18196	2845	10417	10750	14472	14472					-0.0007295140519545384
NEQPRQLFW	9	Unmodified	_NEQPRQLFW_					0	0	0		ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.30672945795	2	609.306729	1216.59891	1.2251	0.00074648	-3.1428	-0.0019149	-1.9177	-0.0011685	609.3048678605576	23.73	0.14463	23.717	23.669	23.813	-0.013048	1221	85	0.885486	0.051472604	0.88396657	358.68842	0	20.85028						165	7	3	NaN	NaN	NaN	0.060816	1	16229	16229		42.318	26.855	1	16307			18197	2845	10417	10750	14473	14473					-0.0007295140519545384
NEQSFLNVRNW	11	Unmodified	_NEQSFLNVRNW_					0	0	0		nc|ENSG00000069974|P51159-2|RAB27A;ENSG00000069974|ENST00000336787|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.8442073865001	2	703.844207	1405.67386	1.3892	0.0009778	-5.2523	-0.0036968	-3.8631	-0.002719	703.8415253352188	25.298	0.096455	25.286	25.238	25.334	-0.012011	1071	55	0.977233	0.03293997	0.97571355	395.255	0	13.322998						164	5	3	NaN	NaN	NaN	0.027833	1	19157	19157		57.782	34.606	1	18205			18198	750	10418	10751	14474	14474					-0.012748136646223429
NEQSQENSIN	10	Unmodified	_NEQSQENSIN_					0	0	0		ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1162.4970855099	1	1162.49709	1161.48981	2.0836	0.0024222	6.2551	0.0072715	8.3387	0.0096937	1162.504204319537	33.214	0.21721	33.214	33.142	33.359	0	123	121	1.5458313	0.070732236	1.5458313	313.2587	0	14.333679						483	10	3	NaN	NaN	NaN	0.02603	1	15191	15191		61.199	21.045	1	47541			18199	5589	10419	10752	14475	14475					-0.08447626885981663
NEQSQENSIN	10	Unmodified						0	0	0		ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1162.49709	1161.48981	1.5703	0.0018254	6.479	0.0075318	8.0492	0.0093572	1162.5044766155197	33.237	0.19305	33.235	33.162	33.355	-0.0024757	117	100	1.5493695	0.05834472	1.54785	313.97568		11.823395	0.010167	0.00012699	0.0010093	NaN	61.199	431	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43013			18200	5589	10419	10752							-0.08447626885981663
NEQVFNLDEDI	11	Unmodified	_NEQVFNLDEDI_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3067890374501	2	668.306789	1334.59903	1.7409	0.0011634	-3.5879	-0.0023978	-1.847	-0.0012344	668.304590619888	24.743	0.2413	24.743	24.695	24.936	0	1089	73	0.96624947	0.043967307	0.96624947	391.01526	0	17.792389						658	11	5	NaN	NaN	NaN	0.44296	1	19319	19319		20.513	2.2798	1	186550	+		18201	8829	10420	10753	14476	14476					-0.05489040986503824
NEQVFNLDEDI	11	Unmodified	_NEQVFNLDEDI_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3067890374501	2	668.306789	1334.59903	1.6642	0.0011122	-4.0626	-0.0027151	-2.3984	-0.0016029	668.3045783465408	24.767	0.26538	24.755	24.707	24.972	-0.012392	1089	76	0.96624947	0.04580176	0.96473	391.01526	0	18.534729						629	12	6	NaN	NaN	NaN	0.6011	1	18457	18457		13.949	1.3791	1	181050	+		18202	8829	10420	10753	14477	14477					-0.05489040986503824
NEQVFNLDEDI	11	Unmodified						0	0	0			REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	668.306789	1334.59903	1.7409	0.0011634	-3.5879	-0.0023978	-1.847	-0.0012344	668.304590619888	24.743	0.2413	24.743	24.695	24.936	0	1089	73	0.96624947	0.043967307	0.96624947	391.01526		17.792389	-0.0057908	0.0002725	0.00075972	NaN	20.513	658	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186550	+		18203	8829	10420	10753							-0.05489040986503824
NEQVFNLDEDI	11	Unmodified						0	0	0			REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-10|ZC3H14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	668.306789	1334.59903	1.6642	0.0011122	-4.0626	-0.0027151	-2.3984	-0.0016029	668.3045783465408	24.767	0.26538	24.755	24.707	24.972	-0.012392	1089	76	0.96624947	0.04580176	0.96473	391.01526		18.534729	0.0057908	-0.00036204	-0.00075972	NaN	20.513	629	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181050	+		18204	8829	10420	10753							-0.05489040986503824
NEQVPMPLE	9	Unmodified	_NEQVPMPLE_					0	0	0		CDK20|p.K243N|1|0.2|ENSG00000156345|chr9:87969308-87969308|C/G|missense_variant	CDK20|p.K243N|1|0.2|ENSG00000156345|chr9:87969308-87969308|C/G|missense_variant	CDK20|p.K243N|1|0.2|ENSG00000156345|chr9:87969308-87969308|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7551494886501	2	528.755149	1055.49575	1.8477	0.00097701	-6.5898	-0.0034844	-4.7421	-0.0025074	528.7528978634456	25.202	0.19302	25.202	25.129	25.322	0	1293	82	0.84127116	0.049776614	0.84127116	341.3609	0	20.197784						362	9	4	NaN	NaN	NaN	0.25448	1	10870	10870		21.835	2.6714	1	55735			18205	90	10421	10754	14478	14478					-0.029781999080114474
NERDLFKTE	9	Unmodified	_NERDLFKTE_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.52789372473336	3	384.527894	1150.56185	1.3502	0.00051918	-10.419	-0.0040065	-9.0691	-0.0034873	384.52384853764084	14.933	0.19217	14.933	14.885	15.077	0	1533	43	0.6930556	0.026047647	0.6930556	421.37616	0	15.836884						228	9	3	NaN	NaN	NaN	0.41766	1	14827	14827		8.2775	1.1472	1	38025			18206	2573	10422	10755	14479	14479					-0.007406677416156526
NERLDLWTLQF	11	Unmodified	_NERLDLWTLQF_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.8724335097	2	717.872434	1433.73031	1.1725	0.00084173	1.7528	0.0012583	2.9253	0.0021	717.8740354640821	28.725	0.072378	28.716	28.692	28.765	-0.0083504	972	46	1.0375156	0.027356982	1.0359962	419.5571	0	11.062775						90	4	3	NaN	NaN	NaN	0.6875	1	19333	19333		8.2775	0.032722	1	7582	+		18207	9687	10423	10756	14480	14480					0.03079814172042461
NERYHQRKEWW	11	Unmodified	_NERYHQRKEWW_					0	0	0			REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.39493007605	2	816.39493	1630.77531	2.0602	0.0016819	7.7506	0.0063276	9.8108	0.0080095	816.4009654500564	32.683	0.24128	32.683	32.635	32.876	0	918	85	1.070307	0.050954103	1.070307	432.31735	0	20.581299						647	11	6	NaN	NaN	NaN	0.6085	1	20784	20784		13.463	8.734	1	246860	+		18208	12065	10424	10757	14481	14481					-0.014849422420866176
NERYHQRKEWW	11	Unmodified	_NERYHQRKEWW_					0	0	0			REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	816.39493007605	2	816.39493	1630.77531	1.5977	0.0013044	7.2045	0.0058817	8.8022	0.0071861	816.4009027463356	32.706	0.21715	32.703	32.655	32.872	-0.0031052	915	79	1.072127	0.047314405	1.0706075	433.05246	0	19.111206						706	10	6	NaN	NaN	NaN	0.57257	1	19754	19754		15.822	12.932	1	247110	+		18209	12065	10424	10757	14482	14482					-0.014849422420866176
NERYHQRKEWW	11	Unmodified						0	0	0			REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	816.39493	1630.77531	2.0602	0.0016819	7.7506	0.0063276	9.8108	0.0080095	816.4009654500564	32.683	0.24128	32.683	32.635	32.876	0	918	85	1.070307	0.050954103	1.070307	432.31735		20.581299	-0.009969	0.00054963	-0.00015022	NaN	15.822	647	11	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246860	+		18210	12065	10424	10757							-0.014849422420866176
NERYHQRKEWW	11	Unmodified						0	0	0			REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	816.39493	1630.77531	1.5977	0.0013044	7.2045	0.0058817	8.8022	0.0071861	816.4009027463356	32.706	0.21715	32.703	32.655	32.872	-0.0031052	915	79	1.072127	0.047314405	1.0706075	433.05246		19.111206	0.009969	-0.00034204	0.00015022	NaN	15.822	706	10	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247110	+		18211	12065	10424	10757							-0.014849422420866176
NESEILSLF	9	Unmodified	_NESEILSLF_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2689469681501	2	526.268947	1050.52334	0.76617	0.00040321	-2.0724	-0.0010906	-1.3062	-0.00068742	526.2683167876824	12.772	0.12012	12.772	12.724	12.844	0	1290	46	0.84311575	0.027665615	0.84311575	342.1302	0	11.226532						109	6	2	NaN	NaN	NaN	0.44082	1	10647	10647		12.049	0.87837	1	10426			18212	3152	10425	10758	14483	14483					0.00010026623863268469
NESSGSSI	8	Unmodified	_NESSGSSI_					0	0	0			REV__ENST00000529851.5_1_2:68740776-68805151:+|nuORF	REV__ENST00000529851.5_1_2:68740776-68805151:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.3370030399	1	780.337003	779.329727	1.8263	0.0014251	5.358	0.004181	7.1842	0.0056061	780.3414316969239	22.38	0.16861	22.38	22.332	22.501	0	546	52	1.294491	0.030533075	1.294491	263.8324	0	6.222992						179	8	3	NaN	NaN	NaN	0.57691	1	4475	4475		26.732	1.7706	1	15034	+		18213	10557	10426	10759	14484	14484					-0.06876510092376975
NESSGSSI	8	Unmodified						0	0	0			REV__ENST00000529851.5_1_2:68740776-68805151:+|nuORF	REV__ENST00000529851.5_1_2:68740776-68805151:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	780.337003	779.329727	1.8263	0.0014251	5.358	0.004181	7.1842	0.0056061	780.3414316969239	22.38	0.16861	22.38	22.332	22.501	0	546	52	1.294491	0.030533075	1.294491	263.8324		6.222992	0.0071465	0.0002456	0.0016578	NaN	26.732	179	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15034	+		18214	10557	10426	10759							-0.06876510092376975
NEVGFQHPL	9	Unmodified	_NEVGFQHPL_					0	0	0		ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3	ENSG00000164483|ENST00000439090|SAMD3	ENSG00000164483|ENST00000439090|SAMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5159704584999	1	1040.51597	1039.50869	2.349	0.0024442	-3.5878	-0.0037332	-1.2388	-0.001289	1040.5124838630572	26.36	0.14483	26.36	26.263	26.408	0	156	187	1.5263584	0.10998428	1.5263584	309.7389	0	22.318756						390	7	2	NaN	NaN	NaN	0.070055	1	10187	10187		40.154	4.8573	1	326470			18215	4324	10427	10760	14485	14485					-0.009480007336378549
NEVGVIES	8	Unmodified	_NEVGVIES_					0	0	0			REV__ENST00000595560.1_1_19:58067392-58071050:-|nuORF	REV__ENST00000595560.1_1_19:58067392-58071050:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.4203387388	1	846.420339	845.413062	0.62698	0.00053069	-7.4662	-0.0063196	-6.8392	-0.0057889	846.4139795776165	32.417	0.28959	32.414	32.365	32.655	-0.0031052	486	55	1.3303722	0.032261968	1.3288528	270.77838	0	6.5664673						323	13	3	NaN	NaN	NaN	0.55996	1	5195	5195		27.789	1.6739	1	45836	+		18216	12943	10428	10761	14486	14486					-0.015827736445316987
NEVLYNGFTWS	11	Unmodified	_NEVLYNGFTWS_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3091347611501	2	665.309135	1328.60372	2.3339	0.0015528	-11.797	-0.0078485	-9.463	-0.0062958	665.3012280839528	23.296	0.16889	23.283	23.21	23.379	-0.013294	1125	37	0.9442611	0.022000253	0.94274163	382.13483	0	8.90332						85	8	2	NaN	NaN	NaN	0.62211	1	18379	18379		12.57	2.9581	1	7286.7			18217	8101	10429	10762	14487	14487					-0.047441120530947956
NEVMLDCIY	9	Unmodified	_NEVMLDCIY_					0	0	0			REV__ENST00000430020.5_1_3:9704013-9725062:+|nuORF	REV__ENST00000430020.5_1_3:9704013-9725062:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2435603471	2	550.24356	1098.47257	1.3051	0.00071815	5.222	0.0028734	6.5271	0.0035915	550.2452704105611	22.235	0.096462	22.222	22.222	22.318	-0.013731	1290	55	0.84311575	0.033189833	0.8415963	341.9369	0	13.460571						72	5	2	NaN	NaN	NaN	0.62619	1	12440	12440		4.4131	0	1	7850.7	+		18218	10296	10430	10763	14488	14488					-0.07272962017009377
NEYESRSLW	9	Unmodified	_NEYESRSLW_					0	0	0		nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-5|OSBPL9	nc|ENSG00000117859|Q96SU4-5|OSBPL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.2725522896001	2	592.272552	1182.53055	1.3522	0.00080088	-0.31841	-0.00018859	1.0338	0.00061229	592.2730565801465	20.213	0.16821	20.213	20.141	20.309	0	1209	52	0.892844	0.03126645	0.892844	361.7858	0	12.669342						111	8	2	NaN	NaN	NaN	0.3947	1	15907	15907		13.949	2.2099	1	10818			18219	2158	10431	10764	14489	14489					-0.053412407757150504
NEYKALKKDDE	11	Unmodified	_NEYKALKKDDE_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8382563413501	2	676.838256	1351.66196	1.7127	0.0011592	-5.533	-0.0037449	-3.8203	-0.0025858	676.8340038657449	25.564	0.07233	25.564	25.539	25.612	0	1077	49	0.9735726	0.029292583	0.9735726	393.92776	0	11.852386						74	4	2	NaN	NaN	NaN	0.44296	1	19566	19566		20.513	0	1	9429.3			18220	4197	10432	10765	14490	14490					0.00019524801518855384
NFACQSYPCYS	11	Unmodified	_NFACQSYPCYS_					0	0	0			REV__nc|ENSG00000138185|P49961-4|ENTPD1	REV__nc|ENSG00000138185|P49961-4|ENTPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.7469984930501	2	641.746998	1281.47944	1.7893	0.0011483	-1.8995	-0.001219	-0.11012	-7.0672E-05	642.24755515541	32.369	0.21725	32.365	32.316	32.534	-0.0037613	1170	106	0.91673553	0.06427485	0.9152161	371.13583	0	26.021362						876	10	8	NaN	NaN	NaN	0.65577	1	17622	17622		10.36	0	1	210520	+		18221	9720	10433	10766	14491	14491					-0.15003649136428976
NFADEDEA	8	Unmodified	_NFADEDEA_					0	0	0		ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.3424823482999	1	910.342482	909.335206	1.4936	0.0013597	1.6292	0.0014831	3.1228	0.0028428	910.3434799495915	33.334	0.14476	33.331	33.283	33.428	-0.0024757	525	34	1.3070582	0.019742012	1.3055388	265.73373	0	4.013672						89	7	2	NaN	NaN	NaN	0.84756	1	6099	6099		1.072	0.67635	1	5340.6			18222	441	10434	10767	14492	14492					-0.12308831300572365
NFADEDEA	8	Unmodified						0	0	0		ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	910.342482	909.335206	1.6759	0.0015257	0.85028	0.00077405	2.5262	0.0022997	910.3427824169574	33.311	0.048267	33.311	33.287	33.335	0	525	25	1.3070582	0.01435709	1.3070582	265.73373		2.9188538	-0.010158	-0.00048637	0.00075972	NaN	1.072	27	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1479			18223	441	10434	10767							-0.12308831300572365
NFCGPYSELF	10	Unmodified	_NFCGPYSELF_					0	0	0		ENST00000570365.1_1_17:3970518-3976036:-|nuORF;ENSG00000074755|ENST00000381638|ZZEF1	ENST00000570365.1_1_17:3970518-3976036:-|nuORF	ENST00000570365.1_1_17:3970518-3976036:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.75514948865	2	588.755149	1175.49575	1.3912	0.00081906	3.289	0.0019364	4.6801	0.0027554	588.7574131384885	34.758	0.14469	34.758	34.71	34.855	0	1197	37	0.9001988	0.022059679	0.9001988	364.79117	0	8.939331						148	7	4	NaN	NaN	NaN	0.56921	1	15651	15651		16.584	2.5426	1	15852			18224	826	10435	10768	14493	14493					-0.08498199908035531
NFDDYTVNL	9	Unmodified	_NFDDYTVNL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.4894809364998	1	1100.48948	1099.4822	1.5783	0.0017369	-0.61992	-0.00068221	0.95837	0.0010547	1100.4891203427533	27.108	0.096529	27.098	27.074	27.17	-0.010126	114	58	1.5511382	0.033603072	1.5496187	314.54245	0	6.814087						128	5	2	NaN	NaN	NaN	0.097143	1	12482	12482		36.235	18.436	1	14745			18225	5774	10436	10769	14494	14494					-0.06355734415615188
NFDDYTVNL	9	Unmodified						0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1100.48948	1099.4822	1.4324	0.0015763	1.5775	0.001736	3.0099	0.0033123	1100.4910697873768	27.084	0.19305	27.084	27.06	27.253	0	114	67	1.5511382	0.038915038	1.5511382	314.54245		7.891266	-0.0066244	0.00093285	0.00075972	NaN	36.235	161	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18564			18226	5774	10436	10769							-0.06355734415615188
NFDEENAYF	9	Unmodified	_NFDEENAYF_					0	0	0		ENST00000580108.1_1_17:61864409-61875460:+|nuORF;ENSG00000198231|ENST00000389924|DDX42	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.4530954301997	1	1148.4531	1147.44582	2.8543	0.003278	-0.65038	-0.00074693	2.2039	0.0025311	1148.4513440762282	25.202	0.12067	25.202	25.178	25.298	0	123	43	1.5458313	0.024766684	1.5458313	313.30377	0	5.0196533						115	6	2	NaN	NaN	NaN	0.06409	1	14700	14700		53.14	26.409	1	10314			18227	5764	10437	10770	14495	14495					-0.12200611312346155
NFDEENAYF	9	Unmodified	_NFDEENAYF_					0	0	0		ENST00000580108.1_1_17:61864409-61875460:+|nuORF;ENSG00000198231|ENST00000389924|DDX42	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENST00000580108.1_1_17:61864409-61875460:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1148.4530954301997	1	1148.4531	1147.44582	2.5573	0.002937	-0.6544	-0.00075154	1.9029	0.0021854	1148.4526509965117	25.201	0.1206	25.189	25.165	25.286	-0.012011	120	55	1.5476005	0.03183961	1.5460811	313.66235	0	6.4531555						126	6	2	NaN	NaN	NaN	0.05973	1	14214	14214		48.002	24.668	1	10976			18228	5764	10437	10770	14496	14496					-0.12200611312346155
NFDGSSTL	8	Unmodified	_NFDGSSTL_					0	0	0		ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.3733885462001	1	840.373389	839.366112	1.9149	0.0016092	0.15746	0.00013233	2.0723	0.0017415	840.3736110175599	19.54	0.28809	19.54	19.492	19.78	0	498	79	1.3232021	0.046595693	1.3232021	269.35	0	9.484985						359	13	3	NaN	NaN	NaN	0.063835	1	5258	5258		74.332	40.634	1	49541			18229	2965	10438	10771	14497	14497					-0.059996331956540416
NFDGSSTL	8	Unmodified	_NFDGSSTL_					0	0	0		ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENST00000475808.5_1_1:182355349-182357923:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.3733885462001	1	840.373389	839.366112	1.2306	0.0010342	1.072	0.00090088	2.3026	0.0019351	840.3738856965306	19.539	0.21667	19.524	19.476	19.693	-0.014143	495	58	1.3249949	0.03406334	1.3234755	269.71497	0	6.9339294						311	10	3	NaN	NaN	NaN	0.034406	1	5127	5127		85.344	41.042	1	39944			18230	2965	10438	10771	14498	14498					-0.059996331956540416
NFDKLIYTA	9	Unmodified	_NFDKLIYTA_					0	0	0			REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	REV__TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7873068968001	2	542.787307	1083.56006	2.0076	0.0010897	5.897	0.0032008	7.9046	0.0042905	542.792952849624	29.014	0.048267	29.007	28.958	29.007	-0.0077209	1233	43	0.87812483	0.025775313	0.8766054	356.19598	0	10.455261						42	3	2	NaN	NaN	NaN	0.66822	1	11821	11821		1.9246	0	1	2869.9	+		18231	11092	10439	10772	14499	14499					0.021623232404408554
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2589135981001	2	542.258914	1082.50327	1.2222	0.00066276	-0.70382	-0.00038165	0.51839	0.0002811	542.2584495984418	32.08	0.096497	32.08	32.056	32.152	0	1302	79	0.8357362	0.047946036	0.8357362	339.00598	0	19.44873						272	5	4	NaN	NaN	NaN	0.012018	1	12078	12078		86.792	17.56	1	46780			18232	5487	10440	10773	14500	14500					-0.03467724316078602
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5105507296	1	1083.51055	1082.50327	1.1903	0.0012897	2.235	0.0024217	3.4254	0.0037114	1083.5122533544434	32.08	0.21717	32.08	32.008	32.225	0	117	70	1.5493695	0.04068601	1.5493695	314.24487	0	8.252014						334	10	3	NaN	NaN	NaN	0.00016172	1	12080	12080		119.15	55.421	1	41209			18233	5487	10440	10773	14501	14501					-0.03467724316078602
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2589135981001	2	542.258914	1082.50327	0.79293	0.00042997	-1.2643	-0.00068556	-0.47134	-0.00025559	542.2581717525921	32.079	0.096535	32.075	32.051	32.148	-0.0037613	1299	73	0.8375814	0.044262707	0.83606195	339.75446	0	17.95462						278	5	3	NaN	NaN	NaN	0.0035249	1	11764	11764		106.42	31.336	1	47835			18234	5487	10440	10773	14502	14502					-0.03467724316078602
NFDNILNSF	9	Unmodified	_NFDNILNSF_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5105507296	1	1083.51055	1082.50327	0.89587	0.00097068	0.55256	0.00059871	1.4484	0.0015694	1083.511044961522	32.079	0.33784	32.075	31.979	32.316	-0.0037613	114	67	1.5511382	0.038910866	1.5496187	314.6036	0	7.891968						396	15	4	NaN	NaN	NaN	0.012861	1	11766	11766		84.233	39.068	1	41920			18235	5487	10440	10773	14503	14503					-0.03467724316078602
NFDPPIEEF	9	Unmodified	_NFDPPIEEF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.4993173412997	1	1107.49932	1106.49204	1.6398	0.0018161	0.83916	0.00092937	2.479	0.0027455	1107.5004031023163	28.918	0.096533	28.918	28.87	28.967	0	156	58	1.5263584	0.033656597	1.5263584	309.49323	0	6.824402						134	5	3	NaN	NaN	NaN	0.34922	1	13115	13115		15.822	7.5316	1	7672.2			18236	2056	10441	10774	14504	14504					-0.056945464102454935
NFDPPIEEF	9	Unmodified						0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1107.49932	1106.49204	1.2628	0.0013985	0.31498	0.00034884	1.5777	0.0017473	1107.500433385827	28.942	0.096558	28.933	28.861	28.958	-0.0083485	156	52	1.5263584	0.030113697	1.5248389	309.49323		6.1060486	0.0075275	-0.00029829	-0.00075972	NaN	15.822	135	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7095			18237	2056	10441	10774							-0.056945464102454935
NFDVEVLL	8	Unmodified	_NFDVEVLL_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5036744377002	1	948.503674	947.496398	1.0859	0.00103	-0.46309	-0.00043924	0.62282	0.00059075	948.502801640867	33.118	0.096508	33.118	33.069	33.166	0	261	40	1.4642475	0.023113847	1.4642475	297.51254	0	4.6963806						77	5	2	NaN	NaN	NaN	0.16655	1	7020	7020		52.624	16.038	1	6012.9			18238	2849	10442	10775	14505	14505					0.020549628033450063
NFDVEVLL	8	Unmodified	_NFDVEVLL_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5036744377002	1	948.503674	947.496398	1.1467	0.0010877	2.2019	0.0020885	3.3487	0.0031762	948.5071258607379	33.092	0.1206	33.09	33.066	33.186	-0.0024757	258	40	1.4660252	0.023111463	1.4645058	297.87375	0	4.6958923						100	6	2	NaN	NaN	NaN	0.16655	1	6891	6891		52.624	27.663	1	7330.2			18239	2849	10442	10775	14506	14506					0.020549628033450063
NFDVTYNWI	9	Unmodified	_NFDVTYNWI_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.2745636623	2	586.274564	1170.53457	0.58927	0.00034548	-0.052853	-3.0987E-05	0.53642	0.00031449	586.274078476782	31.838	0.16891	31.833	31.809	31.978	-0.0044155	1191	61	0.90387505	0.036770105	0.9023556	366.29892	0	14.901245						221	8	4	NaN	NaN	NaN	0.59509	1	14958	14958		5.6942	0	1	20531			18240	467	10443	10776	14507	14507					-0.043871512820032876
NFEFKINQ	8	Unmodified	_NFEFKINQ_					0	0	0		tr|U7SMS8|U7SMS8_FUSNUSigma-EfactornegativeregulatoryproteinRseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01807PE=4SV=1	tr|U7SMS8|U7SMS8_FUSNUSigma-EfactornegativeregulatoryproteinRseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01807PE=4SV=1	tr|U7SMS8|U7SMS8_FUSNUSigma-EfactornegativeregulatoryproteinRseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01807PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.263998976	2	520.263999	1038.51345	2.0276	0.0010549	0.46501	0.00024193	2.4927	0.0012968	520.2644078269321	30.029	0.28964	30.029	29.908	30.198	0	1281	82	0.84864825	0.04977131	0.84864825	344.42676	0	20.19983						560	13	4	NaN	NaN	NaN	0.55996	1	10136	10136		27.789	9.9898	1	83548			18241	13778	10444	10777	14508	14508					-0.0042711659086762666
NFFHISTFF	9	Unmodified	_NFFHISTFF_					0	0	0		ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2821917291501	2	580.282192	1158.54983	1.1925	0.00069201	6.4529	0.0037445	7.6454	0.0044365	580.786551199568	31.114	0.19308	31.109	31.036	31.229	-0.0050716	1185	88	0.90755045	0.053319573	0.906031	367.83267	0	21.610565						351	9	3	NaN	NaN	NaN	0.33629	1	14586	14586		16.584	5.9792	1	32634			18242	6607	10445	10778	14509	14509					-0.023102396941339975
NFGTTASS	8	Unmodified	_NFGTTASS_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3471737957	1	784.347174	783.339897	1.9676	0.0015432	-7.6075	-0.0059669	-5.64	-0.0044237	784.3409222802264	28.074	0.16895	28.074	28.05	28.219	0	567	52	1.2819146	0.030555964	1.2819146	261.24606	0	6.227112						196	8	2	NaN	NaN	NaN	0.76633	1	4540	4540		13.737	4.6139	1	21504	+		18243	9962	10446	10779	14510	14510					-0.06043902367139253
NFILTQTALN	10	Unmodified	_NFILTQTALN_					0	0	0		nc|ENSG00000184507|Q86Y26-2|NUTM1;nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.8766343617666	3	378.876634	1133.60807	2.1026	0.00079664	-7.8656	-0.0029801	-5.7629	-0.0021834	378.8734474950608	18.386	0.19214	18.372	18.276	18.468	-0.01395	1416	34	0.76547134	0.020382881	0.7639519	465.48697	0	12.394928						132	9	2	NaN	NaN	NaN	0.62092	1	13772	13772		7.8039	0	1	18628			18244	5355	10447	10780	14511	14511					0.04661397160452907
NFIQNFYLP	9	Unmodified	_NFIQNFYLP_					0	0	0		nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	nc|ENSG00000212710|Q9HC47|CTAGE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2952991044	2	578.295299	1154.57605	1.9576	0.0011321	7.209	0.0041689	9.1666	0.005301	578.8028821937269	34.589	0.072372	34.589	34.565	34.638	0	1197	43	0.9001988	0.025741875	0.9001988	364.8678	0	10.433655						53	4	2	NaN	NaN	NaN	0.67989	1	14972	14972		0.92586	0.23471	1	3001.5			18245	8034	10448	10781	14512	14512					0.004940294773177811
NFIYRKELF	9	Unmodified	_NFIYRKELF_					0	0	0		POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.5607576689333	3	410.560758	1228.66044	1.4544	0.00059713	-2.1798	-0.00089493	-0.72536	-0.00029781	410.55980847800345	22.501	0.096375	22.501	22.477	22.573	0	1485	43	0.72280174	0.026005268	0.72280174	439.1312	0	15.799225						117	5	3	NaN	NaN	NaN	0.44834	1	17222	17222		11.739	2.1272	1	11745			18246	2463	10449	10782	14513	14513					0.05525980294078181
NFLEQLEP	8	Unmodified	_NFLEQLEP_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4938380329002	1	989.493838	988.486562	2.3247	0.0023002	6.8684	0.0067962	9.1931	0.0090965	989.5001070876459	25.226	0.024143	25.226	25.202	25.226	0	228	46	1.4837929	0.026638746	1.4837929	301.30466	0	5.409363						43	2	2	NaN	NaN	NaN	0.81756	1	8160	8160		6.8632	0	1	3672.5	+		18247	10922	10450	10783	14514	14514					-0.008142252020320484
NFLHADCDKFR	11	Unmodified	_NFLHADCDKFR_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.88379452796653	3	455.883795	1364.62955	0.2609	0.00011894	1.8138	0.00082689	2.0747	0.00094583	455.88388909270856	38.708	0.048069	38.708	38.708	38.756	0	1425	28	0.7599118	0.016682267	0.7599118	461.16638	0	10.123962						44	3	2	NaN	NaN	NaN	0.73057	1	19736	19736		2.3495	0.49932	1	3324.4			18248	467	10451	10784	14515	14515					-0.038175410825033396
NFLSRSFYW	9	Unmodified	_NFLSRSFYW_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.2983731096001	2	610.298373	1218.58219	1.6069	0.00098066	2.1622	0.0013196	3.7691	0.0023003	610.2986714332028	28.074	0.21718	28.074	28.001	28.219	0	1179	85	0.9112251	0.051417053	0.9112251	369.1079	0	20.827393						637	10	6	NaN	NaN	NaN	0.034172	1	16945	16945		53.652	14.734	1	173400			18249	1477	10452	10785	14516	14516					-0.01835452291152251
NFLSRSFYW	9	Unmodified	_NFLSRSFYW_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.2983731096001	2	610.298373	1218.58219	0.85521	0.00052193	0.82611	0.00050417	1.6813	0.0010261	610.2983504340884	28.121	0.14477	28.112	28.04	28.185	-0.0089779	1176	76	0.9130621	0.04590559	0.91154265	369.85202	0	18.59488						454	7	5	NaN	NaN	NaN	0.057383	1	16265	16265		43.776	23.262	1	136010			18250	1477	10452	10785	14517	14517					-0.01835452291152251
NFNEEIYKDVR	11	Unmodified	_NFNEEIYKDVR_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.8516980676	2	713.851698	1425.68884	2	0.0014277	-5.8649	-0.0041867	-3.8649	-0.002759	713.8481326977939	23.344	0.048262	23.331	23.331	23.379	-0.013294	1047	31	0.99186665	0.018284142	0.9903472	401.1189	0	7.394287						49	3	2	NaN	NaN	NaN	0.53563	1	19296	19296		17.198	7.5868	1	4927	+		18251	13443	10453	10786	14518	14518					-0.0069736658731471834
NFNEEIYKDVR	11	Unmodified						0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	713.851698	1425.68884	2	0.0014277	-5.8649	-0.0041867	-3.8649	-0.002759	713.8481326977939	23.344	0.048262	23.331	23.331	23.379	-0.013294	1047	31	0.99186665	0.018284142	0.9903472	401.1189		7.394287	0.0051793	-0.0006819	0.0019834	NaN	17.198	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4927	+		18252	13443	10453	10786							-0.0069736658731471834
NFNVWNIK	8	Unmodified	_NFNVWNIK_					0	0	0		nc|ENSG00000173421|Q8IYA8-3|IHO1;ENSG00000173421|ENST00000452691|IHO1	nc|ENSG00000173421|Q8IYA8-3|IHO1	nc|ENSG00000173421|Q8IYA8-3|IHO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.77453387255	2	517.774534	1033.53451	1.9455	0.0010073	7.5573	0.003913	9.5029	0.0049204	517.7784558187743	17.045	0.096039	17.045	16.997	17.093	0	1272	76	0.854179	0.046099424	0.854179	346.69324	0	18.710815						107	5	2	NaN	NaN	NaN	0.83211	1	9933	9933		4.9097	0.49665	1	9016.1			18253	4890	10454	10787	14519	14519					0.01908893508652909
NFNVWNIK	8	Unmodified						0	0	0		nc|ENSG00000173421|Q8IYA8-3|IHO1;ENSG00000173421|ENST00000452691|IHO1	nc|ENSG00000173421|Q8IYA8-3|IHO1	nc|ENSG00000173421|Q8IYA8-3|IHO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.774534	1033.53451	1.757	0.00090972	12.176	0.0063043	13.933	0.007214	517.7812638265357	17.066	0.07205	17.053	17.029	17.101	-0.013294	1275	64	0.85233563	0.038719356	0.8508162	345.94504		15.715393	0.0036474	0.0023029	-0.0016814	NaN	4.9097	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8272.4			18254	4890	10454	10787							0.01908893508652909
NFQIEHHLF	9	Unmodified	_NFQIEHHLF_					0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;ENST00000533676.5_1_11:61641288-61643947:-|nuORF;nc|ENSG00000274150|A8MWK0|FADS2B;nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1;ENSG00000221968|ENST00000278829|FADS3	nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000149485|O60427-2|FADS1;ENSG00000221968|ENST00000278829|FADS3	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.79599759615	2	592.795998	1183.57744	1.3066	0.00077455	-1.5276	-0.00090555	-0.22099	-0.000131	592.7956226397249	21.416	0.12036	21.416	21.368	21.488	0	1128	43	0.9424274	0.025672436	0.9424274	381.8734	0	10.402557						172	6	4	NaN	NaN	NaN	0.056143	1	15956	15956		44.302	23.747	1	25339			18255	2900;6013;3681	10455	10788	14520	14520					-0.007003364339425389
NFQIEHHLF	9	Unmodified	_NFQIEHHLF_					0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;ENST00000533676.5_1_11:61641288-61643947:-|nuORF;nc|ENSG00000274150|A8MWK0|FADS2B;nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1;ENSG00000221968|ENST00000278829|FADS3	nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000149485|O60427-2|FADS1;ENSG00000221968|ENST00000278829|FADS3	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.79599759615	2	592.795998	1183.57744	1.1277	0.00066847	-1.372	-0.00081332	-0.24436	-0.00014485	592.7950041096785	21.537	0.19272	21.523	21.45	21.643	-0.014004	1128	37	0.9424274	0.022005022	0.94090796	381.8734	0	8.916473						207	9	3	NaN	NaN	NaN	0.025843	1	15348	15348		64.55	20.248	1	28129			18256	2900;6013;3681	10455	10788	14521	14521					-0.007003364339425389
NFQYYVELEWR	11	Unmodified	_NFQYYVELEWR_					0	0	0		ENST00000503243.4_1_4:120116909-120133514:-|nuORF	ENST00000503243.4_1_4:120116909-120133514:-|nuORF	ENST00000503243.4_1_4:120116909-120133514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.86989082075	2	773.869891	1545.72523	1.494	0.0011561	5.5048	0.00426	6.9988	0.0054162	773.8743241883496	26.795	0.1211	26.795	26.77	26.891	0	978	55	1.0338683	0.032833695	1.0338683	417.79254	0	13.268311						122	6	2	NaN	NaN	NaN	0.76654	1	20692	20692		2.5994	0.49688	1	11886			18257	7314	10456	10789	14522	14522					-0.025804896905810892
NFSGRGGS	8	Unmodified	_NFSGRGGS_					0	0	0		chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.3587415350001	1	781.358742	780.351465	2.1866	0.0017085	-8.4275	-0.0065849	-6.2409	-0.0048764	781.3525430972552	24.212	0.072397	24.199	24.175	24.248	-0.012749	528	46	1.3052634	0.026926637	1.303744	266.02197	0	5.487854						61	4	2	NaN	NaN	NaN	0.78546	1	4412	4412		11.17	2.0471	1	3822.6			18258	126	10457	10790	14523	14523					-0.047496605531364366
NFSGRGGS	8	Unmodified						0	0	0		chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	chr12:54282662-54283827|522|545.89|0.0|25.7|+|2|HNRNPA1,HNRNPA1|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	781.358742	780.351465	1.5691	0.001226	-10.773	-0.0084172	-9.2034	-0.0071912	781.3509355239951	24.188	0.09656	24.188	24.188	24.285	0	534	43	1.3016734	0.025132895	1.3016734	265.2903		5.122284	-0.0055573	-0.00076958	-0.0010353	NaN	11.17	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4708.7			18259	126	10457	10790							-0.047496605531364366
NFSQSNLIL	9	Unmodified	_NFSQSNLIL_					0	0	0			REV__ENST00000403564.5_1_2:3628395-3628482:+|nuORF	REV__ENST00000403564.5_1_2:3628395-3628482:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2771063512502	2	518.277106	1034.53966	0.93394	0.00048404	2.1063	0.0010917	3.0403	0.0015757	518.277761198895	33.792	0.04829	33.79	33.766	33.814	-0.0018501	1266	49	0.85786515	0.029498875	0.8563457	348.18497	0	11.972839						77	3	3	NaN	NaN	NaN	0.41766	1	9769	9769		13.003	1.8325	1	6571.9	+		18260	12044	10458	10791	14524	14524					0.023771525806296268
NFSSHSTPSCL	11	Unmodified	_NFSSHSTPSCL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-11|NIN	REV__nc|ENSG00000100503|Q8N4C6-11|NIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.2585876346002	2	590.258588	1178.50262	0.92062	0.00054341	-1.687	-0.00099577	-0.76639	-0.00045237	590.2565063681137	31.501	0.21722	31.501	31.477	31.694	0	1215	82	0.8891654	0.0496853	0.8891654	360.30942	0	20.133575						400	10	4	NaN	NaN	NaN	0.58731	1	15770	15770		14.854	0.90522	1	59737	+		18261	13095	10459	10792	14525	14525					-0.07948887027419005
NFSSHSTPSCL	11	Unmodified						0	0	0			REV__nc|ENSG00000100503|Q8N4C6-11|NIN	REV__nc|ENSG00000100503|Q8N4C6-11|NIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.258588	1178.50262	0.92062	0.00054341	-1.687	-0.00099577	-0.76639	-0.00045237	590.2565063681137	31.501	0.21722	31.501	31.477	31.694	0	1215	82	0.8891654	0.0496853	0.8891654	360.30942		20.133575	0.0027401	-0.00071861	-0.00015998	NaN	14.854	400	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59737	+		18262	13095	10459	10792							-0.07948887027419005
NFSSHSTPSCL	11	Unmodified						0	0	0			REV__nc|ENSG00000100503|Q8N4C6-11|NIN	REV__nc|ENSG00000100503|Q8N4C6-11|NIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.258588	1178.50262	0.47731	0.00028174	-0.53872	-0.00031798	-0.061407	-3.6246E-05	590.2581472999273	31.5	0.26548	31.495	31.471	31.737	-0.0044174	1212	85	0.8910048	0.05151713	0.88948536	361.05478		20.875885	-0.0027401	0.00063697	0.00015998	NaN	14.854	409	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59247	+		18263	13095	10459	10792							-0.07948887027419005
NFSYWGRKER	10	Unmodified	_NFSYWGRKER_					0	0	0			REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF	REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8361853891499	2	671.836185	1341.65782	0.98064	0.00065883	1.4467	0.00097195	2.4273	0.0016308	671.8375884485843	28.435	0.12066	28.426	28.402	28.523	-0.0089798	1167	43	0.91857195	0.025705755	0.9170525	371.7014	0	10.401855						127	6	3	NaN	NaN	NaN	0.76892	1	18569	18569		3.2116	0	1	13466	+		18264	12055	10460	10793	14526	14526					0.0006552488910074317
NFSYWGRKER	10	Unmodified						0	0	0			REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF	REV__ENST00000409003.4_2_8:119208954-119209107:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	671.836185	1341.65782	0.98064	0.00065883	1.4467	0.00097195	2.4273	0.0016308	671.8375884485843	28.435	0.12066	28.426	28.402	28.523	-0.0089798	1167	43	0.91857195	0.025705755	0.9170525	371.7014		10.401855	-0.0048218	-0.00037937	-0.00075972	NaN	3.2116	127	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13466	+		18265	12055	10460	10793							0.0006552488910074317
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4785223197	1	984.478522	983.471246	2.3719	0.0023351	0.95365	0.00093885	3.3256	0.003274	984.478571334343	25.757	0.12064	25.757	25.732	25.853	0	249	82	1.4713576	0.047970057	1.4713576	298.80045	0	9.741669						188	6	3	NaN	NaN	NaN	0.070055	1	8002	8002		40.154	16.819	1	21877			18266	2711	10461	10794	14527	14527					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4785223197	1	984.478522	983.471246	2.3186	0.0022826	1.2267	0.0012076	3.5452	0.0034902	984.4772579773415	25.78	0.096533	25.769	25.721	25.817	-0.0116	249	85	1.4713576	0.049738765	1.4698381	298.80045	0	10.100861						204	5	4	NaN	NaN	NaN	0.010878	1	7826	7826		90.252	52.949	1	24348			18267	2711	10461	10794	14528	14528					-0.02115091999246488
NFYITNCQIF	10	Unmodified	_NFYITNCQIF_					0	0	0			REV__ENST00000557005.1_1_14:64490935-64514966:+|nuORF	REV__ENST00000557005.1_1_14:64490935-64514966:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.79734865435	2	631.797349	1261.58014	1.9281	0.0012182	-10.138	-0.0064049	-8.2095	-0.0051867	631.7919575243864	19.036	0.26388	19.036	18.94	19.204	0	1161	76	0.9222442	0.04589075	0.9222442	373.42883	0	18.581757						399	12	5	NaN	NaN	NaN	0.34693	1	18025	18025		25.801	3.9505	1	57451	+		18268	12770	10462	10795	14529	14529					-0.04018249091291182
NFYVFTYCFS	10	Unmodified	_NFYVFTYCFS_					0	0	0		ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.77862458495	2	645.778625	1289.5427	1.5228	0.00098339	-10.754	-0.0069448	-9.2314	-0.0059614	645.7720490887717	27.88	0.31376	27.87	27.75	28.064	-0.009552	1146	88	0.93142134	0.053221762	0.9299019	377.0562	0	21.545135						568	14	4	NaN	NaN	NaN	0.507	1	17752	17752		19.164	9.5519	1	72991			18269	6650	10463	10796	14530	14530					-0.09049340356909852
NFYVFTYCFS	10	Unmodified						0	0	0		ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	645.778625	1289.5427	2.003	0.0012935	-11.591	-0.007485	-9.5877	-0.0061915	645.7711781932702	27.881	0.21717	27.881	27.76	27.977	0	1143	76	0.9332562	0.0458858	0.9332562	377.799		18.575409	0.0051493	-0.00062191	0.0016771	NaN	19.164	424	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56439			18270	6650	10463	10796							-0.09049340356909852
NGAAAGPA	8	Unmodified	_NGAAAGPA_					0	0	0			REV__nc|ENSG00000157168|Q02297-9|NRG1	REV__nc|ENSG00000157168|Q02297-9|NRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	314.6560957585499	2	314.656096	627.297639	0.1292	4.0655E-05	-0.53886	-0.00016956	-0.40966	-0.0001289	314.65655680076867	55.891	0.072014	55.89	55.866	55.938	-0.00059128	1545	43	0.68561107	0.026061833	0.6840916	280.63083	0	10.66748						80	4	3	NaN	NaN	NaN	0.84945	1	1266	1266		0	0	1	6823.9	+		18271	13147	10464	10797	14531	14531					-0.03091832984875964
NGCGPGTL	8	Unmodified	_NGCGPGTL_					0	0	0			REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.3188505552001	1	718.318851	717.311574	1.3818	0.00099259	-9.2403	-0.0066375	-7.8585	-0.0056449	718.3141231888777	55.725	0.072357	55.725	55.701	55.773	0	519	85	1.310647	0.050228238	1.310647	267.52457	0	10.252411						151	4	3	NaN	NaN	NaN	0.84455	1	3550	3550		2.7852	1.3456	1	18075	+		18272	11759	10465	10798	14532	14532					-0.05838923548060393
NGCGPGTL	8	Unmodified						0	0	0			REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	718.318851	717.311574	1.3818	0.00099259	-9.2403	-0.0066375	-7.8585	-0.0056449	718.3141231888777	55.725	0.072357	55.725	55.701	55.773	0	519	85	1.310647	0.050228238	1.310647	267.52457		10.252411	0.0014351	-0.00050668	-0.0019312	NaN	2.7852	151	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18075	+		18273	11759	10465	10798							-0.05838923548060393
NGCGPGTL	8	Unmodified						0	0	0			REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	718.318851	717.311574	-0.56593	-0.00040652	-7.7562	-0.0055714	-8.3222	-0.005978	718.3158774393638	55.722	0.072338	55.722	55.698	55.77	-0.00059128	510	88	1.316029	0.052030325	1.3145095	268.6231		10.62027	-0.0014351	0.00055938	0.0019312	NaN	2.7852	209	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22717	+		18274	11759	10465	10798							-0.05838923548060393
NGDNDCGD	8	Unmodified	_NGDNDCGD_					0	0	0		ENSG00000113600|ENST00000263408|C9;ENSG00000021852|ENST00000371237|C8B	ENSG00000113600|ENST00000263408|C9	ENSG00000113600|ENST00000263408|C9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.12195676744994	2	405.121957	808.229361	1.3764	0.00055761	-9.5488	-0.0038684	-8.1724	-0.0033108	405.11832622717606	36.131	0.36151	36.132	35.988	36.349	0.0011024	1440	97	0.7506418	0.059337437	0.7491224	305.78345	0	24.171844						732	16	4	NaN	NaN	NaN	0.84727	1	4760	4760		1.2418	0.84618	1	95112			18275	462	10466	10799	14533	14533					-0.1824249041768553
NGDNDCGD	8	Unmodified	_NGDNDCGD_					0	0	0		ENSG00000113600|ENST00000263408|C9;ENSG00000021852|ENST00000371237|C8B	ENSG00000113600|ENST00000263408|C9	ENSG00000113600|ENST00000263408|C9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.2366370683	1	809.236637	808.229361	1.2769	0.0010333	-2.0308	-0.0016434	-0.75393	-0.0006101	809.2355980275532	37.383	0.14429	37.386	37.362	37.506	0.0028229	579	85	1.2747238	0.050367832	1.2732043	259.64282	0	10.259186						206	7	2	NaN	NaN	NaN	0.84727	1	4764	4764		1.2418	1.2418	1	15574			18276	462	10466	10799	14534	14534					-0.1824249041768553
NGDNDCGD	8	Unmodified						0	0	0		ENSG00000113600|ENST00000263408|C9;ENSG00000021852|ENST00000371237|C8B	ENSG00000113600|ENST00000263408|C9	ENSG00000113600|ENST00000263408|C9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.121957	808.229361	0.9889	0.00040063	-9.1373	-0.0037017	-8.1484	-0.0033011	405.11827426498735	35.988	0.096535	35.988	35.988	36.085	0	1443	100	0.7487872	0.061195076	0.7487872	305.02795		24.928558	-0.072131	0.00021772	-0.00016758	NaN	1.2418	228	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31679			18277	462	10466	10799							-0.1824249041768553
NGFPKGLG	8	Unmodified	_NGFPKGLG_					0	0	0			REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4253645372003	1	789.425365	788.418088	1.2361	0.0009758	-0.78469	-0.00061946	0.4514	0.00035634	789.4244520816868	20.839	0.19269	20.825	20.728	20.921	-0.014086	1308	40	0.83204526	0.023995101	0.8305259	169.54674	0	4.889496						133	9	2	NaN	NaN	NaN	0.84945	1	4517	4517		0	0	1	11684	+		18278	11531	10467	10800	14535	14535					0.015415750087754532
NGFPKGLG	8	Unmodified						0	0	0			REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.425365	788.418088	1.5512	0.0012246	-0.21362	-0.00016864	1.3376	0.0010559	789.4249012645957	20.814	0.21693	20.814	20.718	20.935	0	1308	46	0.83204526	0.027686596	0.83204526	169.54674		5.641739	-0.0051108	0.0002589	0.00075972	NaN	0	134	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10589	+		18279	11531	10467	10800							0.015415750087754532
NGFPKGLG	8	Unmodified						0	0	0			REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	REV__ENST00000257572.5_1_12:117299006-117299129:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.425365	788.418088	1.2361	0.0009758	-0.78469	-0.00061946	0.4514	0.00035634	789.4244520816868	20.839	0.19269	20.825	20.728	20.921	-0.014086	1308	40	0.83204526	0.023995101	0.8305259	169.54674		4.889496	0.0051108	-0.00019192	-0.00075972	NaN	0	133	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11684	+		18280	11531	10467	10800							0.015415750087754532
NGGGGGGG	8	Unmodified	_NGGGGGGG_					0	0	0		nc|ENSG00000292354|O15266-2|SHOX;ENSG00000185960|ENST00000686671|SHOX;CDK4|p.N70Qfs*15|1|0.3|ENSG00000135446|chr12:57751510-57751511|-/G|frameshift_variant;nc|ENSG00000188687|Q9BY07-2|SLC4A5;ARID1A|p.G922Afs*2|1|0.16|ENSG00000117713|chr1:26766249-26766249|G/-|frameshift_variant;nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000117713|O14497-2|ARID1A;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;nc|ENSG00000188687|Q9BY07|SLC4A5;ENST00000543571.5_1_6:150023374-150039241:-|nuORF;nc|ENSG00000276644|Q9UI36|DACH1;nc|ENSG00000156113|Q12791-6|KCNMA1;ARID1A|p.G731Vfs*12|1|0.29|ENSG00000117713|chr1:26761410-26761411|-/GT|frameshift_variant;nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3;ENSG00000164900|ENST00000297537|GBX1;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;ENSG00000178695|ENST00000377474|KCTD12;ENST00000551706.1_1_12:58145281-58145962:-|nuORF;ENSG00000135446|ENST00000257904|CDK4	nc|ENSG00000292354|O15266-2|SHOX;REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant;nc|ENSG00000151322|Q8IXF0-4|NPAS3;ENSG00000164900|ENST00000297537|GBX1;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000178695|ENST00000377474|KCTD12;ENST00000551706.1_1_12:58145281-58145962:-|nuORF;REV__nc|ENSG00000163214|Q6P158-2|DHX57	nc|ENSG00000143376|Q96L92-3|SNX27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2110146653	1	532.211015	531.203738	0.99714	0.00053069	2.1677	0.0011537	3.1648	0.0016844	532.2137469586712	14.548	0.1198	14.537	14.513	14.633	-0.011218	1302	52	0.8357362	0.03137821	0.8342168	171.70331	0	6.446701						109	6	2	NaN	NaN	NaN	0.84945	1	371	371		0	0	1	6321.3			18281	3416;10274;5446;13309;3730;4353;5121;2944	10468	10801	14536	14536					-0.08061552087144719
NGGIALEL	8	Unmodified	_NGGIALEL_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENST00000531301.1_1_11:106697120-106698287:-|nuORF	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.4355948725	1	786.435595	785.428318	1.6729	0.0013156	1.1494	0.00090395	2.8223	0.0022196	786.4357176952666	27.229	0.072346	27.229	27.205	27.277	0	528	40	1.3052634	0.023333907	1.3052634	265.99222	0	4.755066						56	4	2	NaN	NaN	NaN	0.57691	1	4571	4571		26.732	6.1761	1	3904.1			18282	2293	10469	10802	14537	14537					0.027021379433335824
NGGIALEL	8	Unmodified	_NGGIALEL_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENST00000531301.1_1_11:106697120-106698287:-|nuORF	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4355948725	1	786.435595	785.428318	1.9412	0.0015266	-0.97261	-0.0007649	0.96858	0.00076172	786.4343215441412	27.228	0.048269	27.218	27.218	27.267	-0.010124	525	43	1.3070582	0.02512741	1.3055388	266.35794	0	5.120575						47	3	2	NaN	NaN	NaN	0.49126	1	4488	4488		31.561	9.4347	1	3680.1			18283	2293	10469	10802	14538	14538					0.027021379433335824
NGGLAGLNPAI	11	Unmodified	_NGGLAGLNPAI_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.77727352675	2	498.777274	995.539994	1.5849	0.00079052	-1.9098	-0.00095255	-0.32487	-0.00016204	498.77652141888603	17.834	0.16791	17.82	17.772	17.94	-0.013786	1314	52	0.8283535	0.031374753	0.8268341	336.37988	0	12.740753						185	8	2	NaN	NaN	NaN	0.2154	1	8254	8254		28.896	3.0946	1	20760	+		18284	11433	10470	10803	14539	14539					0.04204572300466225
NGGLAGLNPAI	11	Unmodified						0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	498.777274	995.539994	2.0274	0.0010112	-1.7245	-0.00086012	0.30299	0.00015112	498.7762556422052	17.813	0.11991	17.813	17.765	17.885	0	1314	52	0.8283535	0.031374753	0.8283535	336.37988		12.740753	-0.0035419	7.6905E-05	0.00075972	NaN	28.896	158	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19635	+		18285	11433	10470	10803							0.04204572300466225
NGGLAGLNPAI	11	Unmodified						0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.777274	995.539994	1.5849	0.00079052	-1.9098	-0.00095255	-0.32487	-0.00016204	498.77652141888603	17.834	0.16791	17.82	17.772	17.94	-0.013786	1314	52	0.8283535	0.031374753	0.8268341	336.37988		12.740753	0.0035419	-0.00010796	-0.00075972	NaN	28.896	185	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20760	+		18286	11433	10470	10803							0.04204572300466225
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.5414569275001	1	1049.54146	1048.53418	2.3645	0.0024817	0.20847	0.0002188	2.573	0.0027005	1049.5421752061786	28.098	0.12066	28.098	28.074	28.194	0	162	79	1.5228153	0.046039343	1.5228153	308.98508	0	9.341522						223	6	3	NaN	NaN	NaN	0.44082	1	10571	10571		12.049	2.9255	1	37222	+		18287	8912	10471	10804	14540	14540					0.011854737888143063
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2743666970501	2	525.274367	1048.53418	0.98789	0.00051891	-2.0833	-0.0010943	-1.0954	-0.00057541	525.2748130322359	28.121	0.14482	28.112	28.064	28.209	-0.0089779	1257	76	0.86339295	0.046079576	0.8618735	350.36713	0	18.699188						302	7	3	NaN	NaN	NaN	0.44082	1	10349	10349		12.049	0	1	51148	+		18288	8912	10471	10804	14541	14541					0.011854737888143063
NGHYISLVF	9	Unmodified						0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1049.54146	1048.53418	2.3645	0.0024817	0.20847	0.0002188	2.573	0.0027005	1049.5421752061786	28.098	0.12066	28.098	28.074	28.194	0	162	79	1.5228153	0.046039343	1.5228153	308.98508		9.341522	-0.0072022	0.00023676	-0.0010118	NaN	12.049	223	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37222	+		18289	8912	10471	10804							0.011854737888143063
NGHYISLVF	9	Unmodified						0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.274367	1048.53418	1.6628	0.00087345	-0.83387	-0.00043801	0.82898	0.00043544	525.2746382459367	28.098	0.16895	28.098	28.05	28.219	0	1257	94	0.86339295	0.05715722	0.86339295	350.36713		23.19455	-0.0072022	0.0005071	0.00075972	NaN	12.049	285	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42237	+		18290	8912	10471	10804							0.011854737888143063
NGHYISLVF	9	Unmodified						0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1049.54146	1048.53418	1.3069	0.0013717	-0.83528	-0.00087666	0.47163	0.00049499	1049.5403268619052	28.121	0.14477	28.112	28.04	28.185	-0.0089779	156	97	1.5263584	0.05668187	1.5248389	309.70398		11.500977	0.0072022	-0.0008587	0.0010118	NaN	12.049	273	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39244	+		18291	8912	10471	10804							0.011854737888143063
NGHYISLVF	9	Unmodified						0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.274367	1048.53418	0.98789	0.00051891	-2.0833	-0.0010943	-1.0954	-0.00057541	525.2748130322359	28.121	0.14482	28.112	28.064	28.209	-0.0089779	1257	76	0.86339295	0.046079576	0.8618735	350.36713		18.699188	0.0072022	-0.00080553	-0.00075972	NaN	12.049	302	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51148	+		18292	8912	10471	10804							0.011854737888143063
NGKLPLGA	8	Unmodified	_NGKLPLGA_					0	0	0		ENST00000554655.5_1_14:24837525-24841293:+|nuORF;ENST00000440487.6_1_14:24834883-24840960:+|nuORF;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.4566646656002	1	769.456665	768.449388	3.3884	0.0026072	-1.7155	-0.00132	1.6729	0.0012872	769.4534425840509	33.43	0.048267	33.428	33.404	33.452	-0.0018501	513	19	1.3142352	0.010762095	1.3127158	267.92212	0	2.1939697						17	3	2	NaN	NaN	NaN	0.84651	1	4265	4265		1.6704	0.2308	1	844.55			18293	1290	10472	10805	14542	14542					0.05590148042870169
NGKLPLGA	8	Unmodified						0	0	0		ENST00000554655.5_1_14:24837525-24841293:+|nuORF;ENST00000440487.6_1_14:24834883-24840960:+|nuORF;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.456665	768.449388	1.0559	0.00081248	1.0365	0.00079755	2.0924	0.00161	769.4571088677843	33.335	0.14482	33.335	33.287	33.431	0	510	22	1.316029	0.012555122	1.316029	268.28778		2.5594788	-0.046663	0.0013003	0.0016566	NaN	1.6704	54	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3969.3			18294	1290	10472	10805							0.05590148042870169
NGMGPGGP	8	Unmodified	_NGMGPGGP_					0	0	0			REV__ENST00000527826.1_1_16:2014326-2014626:-|nuORF	REV__ENST00000527826.1_1_16:2014326-2014626:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.2926358047001	1	686.292636	685.285359	2.32	0.0015922	3.3465	0.0022967	5.6664	0.0038888	686.2938896942587	23.73	0.096346	23.717	23.645	23.741	-0.013048	1113	37	0.9515937	0.02199316	0.95007426	194.40588	0	4.4930725						58	5	2	NaN	NaN	NaN	0.84651	1	2868	2868		1.6704	0	1	4318.9	+		18295	9813	10473	10806	14543	14543					-0.069871927195436
NGNNTGET	8	Unmodified	_NGNNTGET_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	806.3275009861001	1	806.327501	805.320225	1.8296	0.0014752	-5.0225	-0.0040497	-3.1929	-0.0025745	806.322837090238	20.309	0.072132	20.309	20.285	20.357	0	561	55	1.2855089	0.032348156	1.2855089	261.85538	0	6.589264						87	4	2	NaN	NaN	NaN	0.77489	1	4810	4810		12.588	3.4647	1	8084.2			18296	4280	10474	10807	14544	14544					-0.0902227837789269
NGNNTGET	8	Unmodified						0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	806.327501	805.320225	1.9924	0.0016065	-5.2894	-0.004265	-3.297	-0.0026585	806.3227483100554	20.333	0.048096	20.319	20.295	20.343	-0.014141	558	52	1.2873057	0.030552626	1.2857863	262.2214		6.2235413	0.0049034	-0.00011515	0.0001387	NaN	12.588	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5454			18297	4280	10474	10807							-0.0902227837789269
NGNSTGSD	8	Unmodified	_NGNSTGSD_					0	0	0			REV__ENSG00000105866|ENST00000222584|SP4	REV__ENSG00000105866|ENST00000222584|SP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.2853018204	1	751.285302	750.278025	0.77646	0.00058334	-8.3316	-0.0062594	-7.5551	-0.005676	751.2797046391615	31.62	0.21722	31.616	31.544	31.761	-0.0044155	657	64	1.2279087	0.037862778	1.2263893	250.42982	0	7.7220306						276	10	3	NaN	NaN	NaN	0.83211	1	3977	3977		4.9097	1.3365	1	25931	+		18298	8976	10475	10808	14545	14545					-0.10710253786271551
NGNSTGSD	8	Unmodified						0	0	0			REV__ENSG00000105866|ENST00000222584|SP4	REV__ENSG00000105866|ENST00000222584|SP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.285302	750.278025	0.77646	0.00058334	-8.3316	-0.0062594	-7.5551	-0.005676	751.2797046391615	31.62	0.21722	31.616	31.544	31.761	-0.0044155	657	64	1.2279087	0.037862778	1.2263893	250.42982		7.7220306	-0.0027452	0.00011491	0.00014187	NaN	4.9097	276	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25931	+		18299	8976	10475	10808							-0.10710253786271551
NGRPAEELA	9	Unmodified	_NGRPAEELA_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.74343070939995	2	478.743431	955.472308	0.94317	0.00045154	-1.7214	-0.00082409	-0.77819	-0.00037255	478.74226898885297	31.789	0.096575	31.785	31.761	31.857	-0.0044174	1350	43	0.80618626	0.025878608	0.8046668	327.5652	0	10.514862						75	5	3	NaN	NaN	NaN	0.58159	1	7075	7075		6.2502	0	1	6043.8			18300	3632	10476	10809	14546	14546					-0.007208776303400555
NGSFSLVL	8	Unmodified	_NGSFSLVL_					0	0	0			REV__ENSG00000173621|ENST00000309602|LRFN4	REV__ENSG00000173621|ENST00000309602|LRFN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.4512449367002	1	836.451245	835.443968	1.5149	0.0012672	-0.64078	-0.00053598	0.87413	0.00073117	836.4507728960384	20.333	0.096273	20.319	20.271	20.367	-0.014141	504	43	1.3196158	0.025108814	1.3180964	268.64032	0	5.111511						78	5	2	NaN	NaN	NaN	0.78264	1	5080	5080		11.548	2.4253	1	6223.5	+		18301	10683	10477	10810	14547	14547					0.019664244603859515
NGSLYLHT	8	Unmodified	_NGSLYLHT_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4523075692001	1	904.452308	903.445031	1.666	0.0015068	1.0565	0.00095557	2.7225	0.0024624	904.4530627881244	27.373	0.072405	27.363	27.315	27.387	-0.010126	1185	64	0.90755045	0.038594007	0.906031	184.52905	0	7.8471985						116	4	2	NaN	NaN	NaN	0.84692	1	6016	6016		1.4396	0	1	9970.7	+		18302	13247	10478	10811	14548	14548					-0.010553611707109667
NGSLYLHT	8	Unmodified						0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	904.452308	903.445031	1.5807	0.0014296	0.28675	0.00025935	1.8674	0.001689	904.4524174441007	27.326	0.096579	27.326	27.302	27.398	0	1191	70	0.90387505	0.042265058	0.90387505	183.78174		8.593613	-0.018691	-0.00028853	-0.001078	NaN	1.4396	128	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12227	+		18303	13247	10478	10811							-0.010553611707109667
NGSLYLHT	8	Unmodified						0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	904.452308	903.445031	1.666	0.0015068	1.0565	0.00095557	2.7225	0.0024624	904.4530627881244	27.373	0.072405	27.363	27.315	27.387	-0.010126	1185	64	0.90755045	0.038594007	0.906031	184.52905		7.8471985	0.018691	0.00040769	0.001078	NaN	1.4396	116	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9970.7	+		18304	13247	10478	10811							-0.010553611707109667
NGSRGGIF	8	Unmodified	_NGSRGGIF_					0	0	0			REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4107771055001	1	807.410777	806.403501	1.7055	0.001377	-8.715	-0.0070366	-7.0095	-0.0056596	807.4037752531628	32.49	0.21717	32.49	32.442	32.659	0	498	64	1.3232021	0.03765297	1.3232021	269.52737	0	7.6696777						295	10	3	NaN	NaN	NaN	0.45125	1	4840	4840		33.698	11.863	1	35604	+		18305	13599	10479	10812	14549	14549					-0.007444971393852029
NGSRGGIF	8	Unmodified						0	0	0			REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	REV__tr|U7T3W5|U7T3W5_FUSNUProteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00640PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	807.410777	806.403501	1.7055	0.001377	-8.715	-0.0070366	-7.0095	-0.0056596	807.4037752531628	32.49	0.21717	32.49	32.442	32.659	0	498	64	1.3232021	0.03765297	1.3232021	269.52737		7.6696777	0.0021119	0.00048763	-0.00013669	NaN	33.698	295	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35604	+		18306	13599	10479	10812							-0.007444971393852029
NGSSGAST	8	Unmodified	_NGSSGAST_					0	0	0			REV__ENST00000336865.6_1_12:109536384-109536997:+|nuORF	REV__ENST00000336865.6_1_12:109536384-109536997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	340.64592500275006	2	340.645925	679.277297	2.0244	0.00068959	2.7292	0.00092968	4.7535	0.0016193	340.6476633731908	36.661	0.072094	36.663	36.639	36.711	0.0016747	1524	31	0.698637	0.018599331	0.69711757	285.49725	0	7.6006165						60	4	2	NaN	NaN	NaN	0.84887	1	2742	2742		0.32989	0	1	5084.6	+		18307	11765	10480	10813	14550	14550					-0.07517048435306606
NGSSTWGP	8	Unmodified	_NGSSTWGP_					0	0	0		ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.3475081467002	1	805.347508	804.340232	1.5567	0.0012537	-8.1078	-0.0065296	-6.5511	-0.005276	805.3400516685685	29.376	0.072374	29.368	29.344	29.417	-0.0077229	525	46	1.3070582	0.026918054	1.3055388	266.2504	0	5.483246						86	4	2	NaN	NaN	NaN	0.81756	1	4700	4700		6.8632	0.77288	1	6995.6			18308	7572	10481	10814	14551	14551					-0.06976482647269222
NGTPGLQM	8	Unmodified	_NGTPGLQM_					0	0	0		ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.3872644714002	1	817.387264	816.379988	1.8311	0.0014967	-0.3363	-0.00027488	1.4948	0.0012218	817.3868945667697	29.522	0.12066	29.522	29.498	29.618	0	471	70	1.3393306	0.041186333	1.3393306	272.75674	0	8.387665						143	6	2	NaN	NaN	NaN	0.8439	1	4970	4970		3.1533	0	1	11324			18309	368	10482	10815	14552	14552					-0.03554678968203007
NGVGTSSS	8	Unmodified	_NGVGTSSS_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3158736673001	1	708.315874	707.308597	0.84081	0.00059556	-6.2967	-0.00446	-5.4558	-0.0038645	708.3117499201442	35.046	0.14477	35.046	34.998	35.143	-4.5776E-05	753	73	1.1701111	0.043399334	1.1685916	238.90216	0	8.860855						133	7	2	NaN	NaN	NaN	0.84727	1	3291	3291		1.2418	0.16982	1	13963			18310	1143	10483	10816	14553	14553					-0.0567647540121925
NGVGTSSS	8	Unmodified						0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.315874	707.308597	0.41262	0.00029227	-6.8939	-0.004883	-6.4812	-0.0045908	708.3111846893011	35.072	0.16894	35.072	34.999	35.168	0	753	43	1.1701111	0.025329828	1.1701111	238.90216		5.1716003	0.012807	-0.00019212	0.00075972	NaN	1.2418	151	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14187			18311	1143	10483	10816							-0.0567647540121925
NGVYVDAAL	9	Unmodified	_NGVYVDAAL_					0	0	0			REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.2374498745	2	461.23745	920.460347	0.23959	0.00011051	-7.0313	-0.0032431	-6.7917	-0.0031326	461.23384736157175	35.048	0.19306	35.048	34.999	35.192	0	1422	64	0.7617651	0.038921177	0.7617651	309.6832	0	15.822784						261	9	3	NaN	NaN	NaN	0.55027	1	6415	6415		7.5404	1.45	1	23183	+		18312	8911	10484	10817	14554	14554					-0.003064943735239467
NGVYVDAAL	9	Unmodified						0	0	0			REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	461.23745	920.460347	0.23959	0.00011051	-7.0313	-0.0032431	-6.7917	-0.0031326	461.23384736157175	35.048	0.19306	35.048	34.999	35.192	0	1422	64	0.7617651	0.038921177	0.7617651	309.6832		15.822784	0.00073672	0.00090731	0.00075972	NaN	7.5404	261	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23183	+		18313	8911	10484	10817							-0.003064943735239467
NGYIYFFSGPK	11	Unmodified	_NGYIYFFSGPK_					0	0	0		ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8191383414501	2	646.819138	1291.62372	1.4136	0.00091435	1.5552	0.0010059	2.9688	0.0019202	646.8206968005331	26.915	0.096519	26.904	26.88	26.976	-0.010645	1107	40	0.9552588	0.023824632	0.9537394	386.6994	0	9.64444						119	5	3	NaN	NaN	NaN	0.74794	1	17786	17786		4.3102	0.34164	1	12303			18314	3101	10485	10818	14555	14555					-0.010423163224686505
NGYRGLCH	8	Unmodified	_NGYRGLCH_					0	0	0			REV__ENSG00000188419|ENST00000357749|CHM	REV__ENSG00000188419|ENST00000357749|CHM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4202959343002	1	919.420296	918.413019	-0.4598	-0.00042275	7.715	0.0070933	7.2552	0.0066706	919.4276703350964	53.713	0.29811	53.712	53.623	53.921	-0.00059128	321	55	1.4286518	0.03207016	1.4271324	290.41168	0	6.519104						309	12	3	NaN	NaN	NaN	0.8439	1	6249	6249		3.1533	0.36816	1	32740	+		18315	11055	10486	10819	14556	14556					-0.04945052125503935
NHAAAAGR	8	Unmodified	_NHAAAAGR_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.3907103654001	1	767.39071	766.383434	1.6566	0.0012713	-10.297	-0.0079017	-8.6403	-0.0066305	767.3835837069885	46.605	0.21569	46.605	46.581	46.797	0	546	52	1.294491	0.030533075	1.294491	263.90958	0	6.2248535						122	10	2	NaN	NaN	NaN	0.84455	1	4303	4303		2.7852	1.3456	1	9626.5			18316	3306	10487	10820	14557	14557					-0.009102480793444556
NHADPEERDC	10	Unmodified	_NHADPEERDC_					0	0	0		ENSG00000179761|ENST00000323372|PIPOX;ENST00000580241.5_1_17:27280417-27383320:+|nuORF;ENST00000583215.5_1_17:27338116-27383320:+|nuORF	ENSG00000179761|ENST00000323372|PIPOX	ENSG00000179761|ENST00000323372|PIPOX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.82449293260004	3	395.824493	1184.45165	1.641	0.00064956	-0.58427	-0.00023127	1.0568	0.00041829	396.1585108651038	22.573	0.24124	22.573	22.549	22.79	0	1503	79	0.711653	0.04834789	0.711653	432.53683	0	29.385468						434	11	5	NaN	NaN	NaN	0.74854	1	15982	15982		2.239	0.71341	1	111170			18317	5165	10488	10821	14558	14558					-0.13319836072287217
NHDGGCDC	8	Unmodified	_NHDGGCDC_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.2348629293	1	820.234863	819.227586	1.2612	0.0010345	-0.25225	-0.0002069	1.009	0.00082758	820.2373767195139	35.023	0.096485	35.023	34.975	35.072	0	594	49	1.265731	0.028784633	1.265731	257.75327	0	5.8617096						108	5	3	NaN	NaN	NaN	0.84945	1	5007	5007		0	0	1	9075.9			18318	454	10489	10822	14559	14559					-0.18925822707285533
NHDGGCDC	8	Unmodified	_NHDGGCDC_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.2348629293	1	820.234863	819.227586	1.3599	0.0011154	1.6727	0.001372	3.0325	0.0024874	820.2384389016992	33.213	0.072411	33.21	33.162	33.235	-0.0024757	573	61	1.2783196	0.035961628	1.2768002	260.3168	0	7.3232117						78	4	2	NaN	NaN	NaN	0.84945	1	4897	4897		0	0	1	5192.8			18319	454	10489	10822	14560	14560					-0.18925822707285533
NHFDLSVIELK	11	Unmodified	_NHFDLSVIELK_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8562521292499	2	657.856252	1313.69795	1.4661	0.00096448	1.2619	0.00083017	2.728	0.0017946	658.3593136581387	37.961	0.096123	37.964	37.94	38.036	0.0034256	1200	37	0.89836043	0.022062063	0.896841	363.60162	0	8.929382						142	5	4	NaN	NaN	NaN	0.76654	1	18168	18168		2.5994	0.67481	1	9303.1			18320	1108	10490	10823	14561	14561					0.05365026769004544
NHFFYESF	8	Unmodified	_NHFFYESF_					0	0	0		ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF	ENSG00000107951|ENST00000263063|MTPAP	ENSG00000107951|ENST00000263063|MTPAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.73507436105	2	545.735074	1089.4556	1.9625	0.001071	7.0089	0.003825	8.9714	0.004896	545.7388449545284	18.05	0.14404	18.036	17.988	18.132	-0.013786	1293	76	0.84127116	0.046084464	0.8397517	341.22375	0	18.692108						217	7	3	NaN	NaN	NaN	0.79149	1	12044	12044		9.746	0	1	24785			18321	1659	10491	10824	14562	14562					-0.0855537851630288
NHGDAGIL	8	Unmodified	_NHGDAGIL_					0	0	0			REV__ENSG00000119723|ENST00000334571|COQ6	REV__ENSG00000119723|ENST00000334571|COQ6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.3947926903	1	796.394793	795.387516	2.1159	0.0016851	-5.1418	-0.0040949	-3.0259	-0.0024098	796.390534630769	25.033	0.048254	25.033	25.033	25.081	0	510	40	1.316029	0.023314	1.316029	268.1284	0	4.75						41	3	2	NaN	NaN	NaN	0.82627	1	4691	4691		5.6942	1.2811	1	2805.3	+		18322	9297	10492	10825	14563	14563					-0.01836203376285539
NHLALALA	8	Unmodified	_NHLALALA_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant;ENST00000560519.1_1_15:64026898-64041594:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.7452451168499	2	411.745245	821.475937	1.5628	0.00064349	-7.7332	-0.0031841	-6.1704	-0.0025406	411.7422125338964	54.068	0.095905	54.068	54.044	54.14	0	1401	34	0.77473325	0.02036959	0.77473325	315.51254	0	8.295593						60	5	2	NaN	NaN	NaN	0.84876	1	5037	5037		0.39566	0	1	4853.1			18323	1453	10493	10826	14564	14564					0.05805836934166564
NHLGAGGG	8	Unmodified	_NHLGAGGG_					0	0	0		nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	341.6669947958501	2	341.666995	681.319437	1.8583	0.00063491	6.1573	0.0021037	8.0155	0.0027386	341.6702677137565	54.86	0.047943	54.86	54.836	54.884	0	1563	31	0.67443806	0.018627703	0.67443806	275.5921	0	7.6117554						50	3	2	NaN	NaN	NaN	0.84945	1	2867	2867		0	0	1	4997			18324	5929	10494	10827	14565	14565					-0.033970282362702164
NHLGAGGG	8	Unmodified	_NHLGAGGG_					0	0	0		nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.6669947958501	2	341.666995	681.319437	0.29695	0.00010146	5.3251	0.0018194	5.6221	0.0019209	341.6707322945282	54.858	0.071922	54.857	54.833	54.905	-0.00061798	1560	34	0.67630076	0.020489395	0.6747813	276.35324	0	8.372467						65	4	3	NaN	NaN	NaN	0.84945	1	2780	2780		0	0	1	4979.4			18325	5929	10494	10827	14566	14566					-0.033970282362702164
NHPGAGGA	8	Unmodified	_NHPGAGGA_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3110630609001	1	680.311063	679.303787	2.0838	0.0014177	5.8581	0.0039853	7.9419	0.005403	680.3152269722243	17.789	0.095879	17.789	17.717	17.813	0	1143	52	0.9332562	0.031175435	0.9332562	190.69247	0	6.3700867						61	5	2	NaN	NaN	NaN	0.84876	1	2831	2831		0.39566	0.065779	1	3442.2			18326	2040	10495	10828	14567	14567					-0.04869314753329945
NHQEFEAL	8	Unmodified	_NHQEFEAL_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.23015615865	2	494.230156	986.445759	0.18545	9.1654E-05	-3.9929	-0.0019734	-3.8074	-0.0018817	494.22826768776144	33.502	0.12067	33.501	33.476	33.597	-0.0018463	1326	58	0.8209676	0.035092473	0.81944823	333.4225	0	14.252228						169	6	3	NaN	NaN	NaN	0.75561	1	7920	7920		15.175	1.1338	1	14917			18327	2456	10496	10829	14568	14568					-0.04800566521669225
NHQFGPPFI	9	Unmodified	_NHQFGPPFI_					0	0	0			REV__nc|ENSG00000131969|Q7Z5M8-2|ABHD12B	REV__nc|ENSG00000131969|Q7Z5M8-2|ABHD12B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5261412143	1	1056.52614	1055.51886	1.9473	0.0020573	7.0395	0.0074374	8.9868	0.0094947	1056.5344672564568	21.753	0.072241	21.74	21.691	21.764	-0.013895	213	55	1.4926696	0.031944394	1.4911501	302.84235	0	6.4811096						78	4	2	NaN	NaN	NaN	0.49672	1	10659	10659		9.746	2.8828	1	5878	+		18328	9522	10497	10830	14569	14569					-0.006673930083934465
NIADLAVRR	9	Unmodified	_NIADLAVRR_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.30398980375	2	514.30399	1026.59343	2.0892	0.0010745	-2.7794	-0.0014295	-0.69021	-0.00035498	514.3022903608905	16.542	0.14392	16.542	16.518	16.662	0	1260	34	0.8615505	0.020266235	0.8615505	349.7163	0	8.226349						104	7	3	NaN	NaN	NaN	0.38313	1	9640	9640		14.425	2.3763	1	8488.1			18329	1695	10498	10831	14570	14570					0.0811936980298924
NIADLAVRR	9	Unmodified						0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.30399	1026.59343	1.7622	0.00090631	-1.1895	-0.00061177	0.57271	0.00029455	514.3037269132443	16.611	0.11997	16.598	16.55	16.67	-0.012993	1257	31	0.86339295	0.018422842	0.8618735	350.46417		7.478119	0.027927	0.0008743	0.00016147	NaN	14.425	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7933.4			18330	1695	10498	10831							0.0811936980298924
NIAGPDAAL	9	Unmodified	_NIAGPDAAL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4414085319	1	841.441409	840.434132	1.7508	0.0014732	0.3425	0.0002882	2.0933	0.0017614	841.4415226463527	21.609	0.14458	21.609	21.561	21.705	0	462	79	1.3447032	0.046575785	1.3447032	273.72116	0	9.480774						283	7	4	NaN	NaN	NaN	0.089764	1	5275	5275		37.302	13.968	1	33835			18331	2444	10499	10832	14571	14571					0.0075323645500020575
NIAGPDAAL	9	Unmodified	_NIAGPDAAL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.4414085319	1	841.441409	840.434132	1.2088	0.0010171	0.24495	0.00020611	1.4537	0.0012232	841.4414510499057	21.609	0.21673	21.595	21.499	21.715	-0.013897	459	82	1.3464937	0.04836464	1.3449743	274.08563	0	9.844879						292	10	3	NaN	NaN	NaN	0.0062755	1	5142	5142		99.986	41.75	1	36942			18332	2444	10499	10832	14572	14572					0.0075323645500020575
NIALTVFFFTQ	11	Unmodified	_NIALTVFFFTQ_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.85043846985	2	650.850438	1299.68632	0.89939	0.00058537	0.93768	0.00061029	1.8371	0.0011957	650.8513882055375	30.872	0.16897	30.866	30.818	30.987	-0.0057545	1080	64	0.9717421	0.038456857	0.97022265	393.3462	0	15.566742						213	8	2	NaN	NaN	NaN	0.6875	1	17947	17947		8.2775	0.59495	1	22628	+		18333	13149	10500	10833	14573	14573					0.048468297457020526
NICGAFLF	8	Unmodified	_NICGAFLF_					0	0	0		tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.4334863825002	1	884.433486	883.42621	1.0728	0.00094883	-0.015845	-1.4014E-05	1.057	0.00093481	884.4339152359696	33.335	0.12068	33.335	33.311	33.431	0	375	79	1.3965509	0.046432137	1.3965509	284.05234	0	9.444092						167	6	3	NaN	NaN	NaN	0.62311	1	5842	5842		23.85	0	1	15020			18334	13930	10501	10834	14574	14574					-0.02016614066121747
NICGAFLF	8	Unmodified						0	0	0		tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	884.433486	883.42621	0.90573	0.00080106	0.41529	0.00036729	1.321	0.0011683	884.4348333745688	33.334	0.16891	33.331	33.283	33.452	-0.0024757	369	67	1.4001206	0.039280415	1.3986012	284.7784		7.9894714	-0.0019035	0.00017829	0.0010252	NaN	23.85	195	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16797			18335	13930	10501	10834							-0.02016614066121747
NIDDPDGEE	9	Unmodified	_NIDDPDGEE_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.3850754445	1	1003.38508	1002.3778	2.0026	0.0020094	-10.439	-0.010474	-8.436	-0.0084645	1003.3752214436198	24.912	0.072393	24.9	24.875	24.948	-0.012392	237	37	1.4784646	0.021314383	1.4769452	300.1655	0	4.3273315						69	4	2	NaN	NaN	NaN	0.6532	1	8500	8500		3.2116	0.42642	1	4965.2	+		18336	9550	10502	10835	14575	14575					-0.12329480962989692
NIDDPDGEE	9	Unmodified						0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1003.38508	1002.3778	1.7838	0.0017899	-7.6112	-0.007637	-5.8274	-0.0058471	1003.377643868422	24.912	0.096544	24.912	24.888	24.985	0	237	40	1.4784646	0.023094296	1.4784646	300.1655		4.68869	0.0062901	0.0010817	0.00075972	NaN	3.2116	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5392.3	+		18337	9550	10502	10835							-0.12329480962989692
NIDDPDGEE	9	Unmodified						0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1003.38508	1002.3778	2.0026	0.0020094	-10.439	-0.010474	-8.436	-0.0084645	1003.3752214436198	24.912	0.072393	24.9	24.875	24.948	-0.012392	237	37	1.4784646	0.021314383	1.4769452	300.1655		4.3273315	-0.0062901	-0.0017553	-0.00075972	NaN	3.2116	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4965.2	+		18338	9550	10502	10835							-0.12329480962989692
NIDSIFIVL	9	Unmodified	_NIDSIFIVL_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.592823796	1	1033.59282	1032.58555	1.0736	0.0011097	-0.013857	-1.4322E-05	1.0597	0.0010953	1033.5939091499697	37.458	0.072239	37.458	37.434	37.506	0	111	73	1.5529068	0.042470813	1.5529068	315.15393	0	8.619232						71	4	2	NaN	NaN	NaN	0.31471	1	9897	9897		17.97	2.507	1	4530			18339	5745	10503	10836	14576	14576					0.07055797762859584
NIDSIFIVL	9	Unmodified						0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1033.59282	1032.58555	1.4661	0.0015153	-0.58055	-0.00060005	0.88555	0.0009153	1033.593848346265	37.455	0.096218	37.458	37.41	37.506	0.0028229	108	58	1.5546752	0.033610225	1.5531558	315.51285		6.8210144	0.00016036	-0.00032806	0.00012448	NaN	17.97	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4743.8			18340	5745	10503	10836							0.07055797762859584
NIDTNRLN	8	Unmodified	_NIDTNRLN_					0	0	0			REV__USP15|p.G720R|1|0.14|ENSG00000135655|chr12:62391354-62391354|G/C|missense_variant	REV__USP15|p.G720R|1|0.14|ENSG00000135655|chr12:62391354-62391354|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.24888022805	2	480.24888	958.483208	1.6755	0.00080468	-10.709	-0.0051432	-9.0339	-0.0043385	480.24386904445146	22.477	0.072149	22.477	22.429	22.501	0	1305	40	0.83389086	0.023989916	0.83389086	338.80692	0	9.747009						65	4	2	NaN	NaN	NaN	0.78967	1	7292	7292		10.605	0.85897	1	8824.6	+		18341	13646	10504	10837	14577	14577					0.002305247439494451
NIDVREPEL	9	Unmodified	_NIDVREPEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7852955241001	2	542.785296	1083.55604	1.4481	0.00078599	-3.0392	-0.0016496	-1.5911	-0.00086362	542.7831802866519	21.103	0.16863	21.103	21.055	21.224	0	1263	91	0.85970795	0.055292487	0.85970795	348.72556	0	22.428406						376	8	3	NaN	NaN	NaN	0.026469	1	12124	12124		63.731	20.736	1	60372			18342	3801	10505	10838	14578	14578					0.01760233746722406
NIDVREPEL	9	Unmodified	_NIDVREPEL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7852955241001	2	542.785296	1083.55604	1.2457	0.00067617	-2.4944	-0.0013539	-1.2487	-0.00067777	542.7838169178789	21.128	0.36108	21.114	20.969	21.33	-0.014004	1263	85	0.85970795	0.051617444	0.8581885	348.72556	0	20.937714						421	16	4	NaN	NaN	NaN	0.017558	1	11815	11815		75.089	29.924	1	63628			18343	3801	10505	10838	14579	14579					0.01760233746722406
NIEEEDYVDVE	11	Unmodified	_NIEEEDYVDVE_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.2882619333001	2	677.288262	1352.56197	1.5955	0.0010806	-6.6736	-0.0045199	-5.0781	-0.0034393	677.7857423288614	29.932	0.2172	29.932	29.763	29.98	0	1122	85	0.9460945	0.05136162	0.9460945	382.80698	0	20.78183						323	10	4	NaN	NaN	NaN	0.67772	1	19571	19571		8.9191	1.9347	1	36046	+		18344	9824	10506	10839	14580	14580					-0.10020757322922691
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.7560067684	2	478.756007	955.497461	2.3101	0.001106	-1.9879	-0.00095171	0.3222	0.00015425	478.7551827122139	17.285	0.28776	17.285	17.213	17.501	0	1341	79	0.8117308	0.048049927	0.8117308	329.81787	0	19.523376						635	13	5	NaN	NaN	NaN	0.032409	1	7218	7218		55.958	15.001	1	470350			18345	2444	10507	10840	14581	14581					0.01793177172248761
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5047370702001	1	956.504737	955.497461	1.7652	0.0016884	-0.41415	-0.00039614	1.351	0.0012922	956.5038658690981	17.285	0.19179	17.285	17.237	17.429	0	234	79	1.4802408	0.04620564	1.4802408	300.72607	0	9.387146						235	9	3	NaN	NaN	NaN	0.021916	1	7219	7219		69.574	15.297	1	23490			18346	2444	10507	10840	14582	14582					0.01793177172248761
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.7560067684	2	478.756007	955.497461	2.3751	0.0011371	-1.4604	-0.00069917	0.91477	0.00043795	478.75533378703363	17.306	0.312	17.292	17.22	17.532	-0.013569	1344	67	0.8098828	0.04065764	0.8083634	329.06702	0	16.519775						621	14	5	NaN	NaN	NaN	0.013959	1	7079	7079		80.901	25.309	1	504390			18347	2444	10507	10840	14583	14583					0.01793177172248761
NIEGPDAKL	9	Unmodified	_NIEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.D1424H|1|0.26|ENSG00000124942|chr11:62530147-62530147|C/G|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5047370702001	1	956.504737	955.497461	1.8795	0.0017978	-0.3352	-0.00032062	1.5443	0.0014772	956.5043588330424	17.306	0.14397	17.292	17.244	17.388	-0.013569	234	76	1.4802408	0.044421434	1.4787214	300.72607	0	9.024689						231	7	3	NaN	NaN	NaN	0.028117	1	7080	7080		61.575	14.987	1	26607			18348	2444	10507	10840	14584	14584					0.01793177172248761
NIHKGIERLM	10	Unmodified	_NIHKGIERLM_					0	0	0			REV__nc|ENSG00000144028|O75643-2|SNRNP200	REV__nc|ENSG00000144028|O75643-2|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.22901360290007	3	404.229014	1209.66521	2.1325	0.00086202	-10.518	-0.0042518	-8.3859	-0.0033898	404.2255170999028	19.346	0.048082	19.332	19.284	19.332	-0.014141	1467	31	0.7339432	0.018565059	0.7324238	445.97778	0	11.281006						34	3	2	NaN	NaN	NaN	0.72095	1	16050	16050		6.6174	0.69763	1	3117.1	+		18349	9888	10508	10841	14585	14585					0.06876541165206618
NIHKKSEVI	9	Unmodified	_NIHKKSEVI_					0	0	0		tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.3140231738001	2	534.314023	1066.61349	1.9501	0.001042	2.0901	0.0011168	4.0402	0.0021587	534.3154338883246	28.46	0.19307	28.46	28.339	28.532	0	1224	58	0.883646	0.034975052	0.883646	358.50708	0	14.18985						213	9	3	NaN	NaN	NaN	0.2345	1	11425	11425		23.118	3.9993	1	20699			18350	13732	10509	10842	14586	14586					0.08285120742948493
NIHKKSEVI	9	Unmodified						0	0	0		tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.314023	1066.61349	0.78925	0.00042171	3.3245	0.0017763	4.1138	0.002198	534.315778957675	28.556	0.21712	28.547	28.427	28.644	-0.0083504	1224	31	0.883646	0.018400967	0.88212657	358.50705		7.465515	0.043742	0.00088713	-0.00075972	NaN	23.118	101	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12423			18351	13732	10509	10842							0.08285120742948493
NIHNKQLTF	9	Unmodified	_NIHNKQLTF_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.80382262825	2	557.803823	1113.59309	1.0896	0.00060776	-9.31	-0.0051931	-8.2204	-0.0045854	557.798401142727	27.301	0.3137	27.291	27.194	27.508	-0.010126	1200	76	0.89836043	0.045980036	0.896841	364.28085	0	18.644684						371	14	3	NaN	NaN	NaN	0.27608	1	13050	13050		20.449	1.2851	1	40579	+		18352	12188	10510	10843	14587	14587					0.04083950083122545
NIHNKQLTF	9	Unmodified						0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.803823	1113.59309	1.2162	0.00067842	-4.651	-0.0025944	-3.4348	-0.0019159	557.8020644344065	27.35	0.072439	27.35	27.326	27.398	0	1194	91	0.902037	0.05519098	0.902037	365.7717		22.37967	0.029567	0.0030496	0.002598	NaN	20.449	108	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13106	+		18353	12188	10510	10843							0.04083950083122545
NIHNKQLTF	9	Unmodified						0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.803823	1113.59309	1.0896	0.00060776	-9.31	-0.0051931	-8.2204	-0.0045854	557.798401142727	27.301	0.3137	27.291	27.194	27.508	-0.010126	1200	76	0.89836043	0.045980036	0.896841	364.28085		18.644684	-0.029567	-0.002148	-0.002598	NaN	20.449	371	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40579	+		18354	12188	10510	10843							0.04083950083122545
NIHPYQPLC	9	Unmodified	_NIHPYQPLC_					0	0	0			REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7658515607001	2	542.765852	1083.51715	1.6402	0.00089024	-4.6471	-0.0025223	-3.0069	-0.0016321	542.763177254417	22.187	0.14475	22.187	22.115	22.26	0	1281	58	0.84864825	0.035024226	0.84864825	344.23956	0	14.20697						117	7	2	NaN	NaN	NaN	0.36492	1	12117	12117		15.175	3.1267	1	12819	+		18355	8545	10511	10844	14588	14588					-0.021267700886483
NIIDFVSII	9	Unmodified	_NIIDFVSII_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5928237960002	1	1033.59282	1032.58555	0.98167	0.0010147	1.3987	0.0014457	2.3804	0.0024604	1033.5944619017914	35.119	0.16894	35.119	35.094	35.263	-4.5776E-05	111	100	1.5529068	0.05835712	1.5513873	315.15393	0	11.843262						253	8	3	NaN	NaN	NaN	0.030669	1	9695	9695		58.235	0.035861	1	33710			18356	4742	10512	10845	14589	14589					0.07055797762882321
NIIREEAVL	9	Unmodified	_NIIREEAVL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.8060309662001	2	528.806031	1055.59751	1.4033	0.00074209	-1.1068	-0.00058529	0.29652	0.0001568	528.8054944511506	21.2	0.096359	21.2	21.175	21.272	0	1263	49	0.85970795	0.02948296	0.85970795	348.8415	0	11.963226						126	5	3	NaN	NaN	NaN	0.04743	1	10910	10910		48.002	12.706	1	23048			18357	1461	10513	10846	14590	14590					0.07193414506036788
NIIREEAVL	9	Unmodified	_NIIREEAVL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.8060309662001	2	528.806031	1055.59751	0.90998	0.0004812	-1.5609	-0.00082543	-0.65095	-0.00034423	528.8052153360792	21.224	0.12038	21.21	21.186	21.306	-0.014004	1260	43	0.8615505	0.025797546	0.8600311	349.58914	0	10.467804						150	6	4	NaN	NaN	NaN	0.27507	1	10687	10687		20.513	5.3379	1	22649			18358	1461	10513	10846	14591	14591					0.07193414506036788
NIISLVII	8	Unmodified	_NIISLVII_					0	0	0			REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.5815308282	1	884.581531	883.574254	1.4086	0.0012461	-0.29782	-0.00026345	1.1108	0.00098262	884.5811393632981	34.877	0.14465	34.877	34.829	34.974	-4.5776E-05	303	55	1.4393384	0.032049775	1.437819	292.75436	0	6.5187683						162	7	3	NaN	NaN	NaN	0.063835	1	5731	5731		74.332	6.2236	1	21921	+		18359	9231	10514	10847	14592	14592					0.12781020459362935
NIISLVII	8	Unmodified						0	0	0			REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	884.581531	883.574254	1.3552	0.0011988	-0.67601	-0.00059798	0.67919	0.0006008	884.5809950683973	34.879	0.096443	34.879	34.855	34.951	0	306	61	1.4375578	0.03561461	1.4375578	292.3922		7.2438354	0.0008059	-0.00016818	-0.0001306	NaN	74.332	164	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21753	+		18360	9231	10514	10847							0.12781020459362935
NIISLVII	8	Unmodified						0	0	0			REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	884.581531	883.574254	1.4086	0.0012461	-0.29782	-0.00026345	1.1108	0.00098262	884.5811393632981	34.877	0.14465	34.877	34.829	34.974	-4.5776E-05	303	55	1.4393384	0.032049775	1.437819	292.75436		6.5187683	-0.0008059	0.00016636	0.0001306	NaN	74.332	162	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21921	+		18361	9231	10514	10847							0.12781020459362935
NILGLDMSVI	10	Unmodified	_NILGLDMSVI_					0	0	0			REV__ENSG00000113073|ENST00000506757|SLC4A9	REV__ENSG00000113073|ENST00000506757|SLC4A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7968173381001	2	537.796817	1073.57908	1.6218	0.00087222	7.3989	0.0039791	9.0208	0.0048513	537.800822754154	26.215	0.16887	26.204	26.156	26.324	-0.011137	1266	103	0.85786515	0.06260389	0.8563457	348.01862	0	25.397125						332	8	4	NaN	NaN	NaN	0.5358	1	11423	11423		17.97	0.17071	1	55464	+		18362	9138	10515	10848	14593	14593					0.045235365398411886
NILGSEVAL	9	Unmodified	_NILGSEVAL_					0	0	0		ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	915.514573475	1	915.514573	914.507297	1.6832	0.001541	-0.24645	-0.00022563	1.4367	0.0013153	915.5140325560055	27.664	0.072399	27.664	27.664	27.736	0	342	46	1.4161754	0.02674365	1.4161754	287.8937	0	5.4367065						65	4	2	NaN	NaN	NaN	0.054111	1	6313	6313		45.165	17.376	1	5527.2			18363	2450	10516	10849	14594	14594					0.04662365177614447
NILHILGNH	9	Unmodified	_NILHILGNH_					0	0	0		tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7932579419501	2	515.793258	1029.57196	1.5372	0.00079289	-6.4491	-0.0033264	-4.9118	-0.0025335	515.7892821557435	26.915	0.14477	26.915	26.843	26.988	0	1269	46	0.8560222	0.027647734	0.8560222	347.45898	0	11.2221985						133	7	3	NaN	NaN	NaN	0.63698	1	9770	9770		3.9685	0.39529	1	12371			18364	13882	10517	10850	14595	14595					0.05835984774262215
NIMIDPVL	8	Unmodified	_NIMIDPVL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5015659477002	1	914.501566	913.494289	1.3452	0.0012302	3.0539	0.0027928	4.3991	0.004023	914.5052656650779	30.632	0.12069	30.632	30.584	30.704	0	312	61	1.433996	0.035626054	1.433996	291.52124	0	7.2424927						170	6	3	NaN	NaN	NaN	0.55996	1	6298	6298		27.789	5.6625	1	18202			18365	4557	10518	10851	14596	14596					0.034082107938843365
NIMIDPVL	8	Unmodified	_NIMIDPVL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5015659477002	1	914.501566	913.494289	1.2533	0.0011462	2.3142	0.0021163	3.5675	0.0032625	914.5042634759466	30.607	0.14477	30.601	30.577	30.722	-0.0057545	312	58	1.433996	0.033839345	1.4324765	291.52124	0	6.8792725						131	7	2	NaN	NaN	NaN	0.087315	1	6177	6177		67.154	22.516	1	19754			18366	4557	10518	10851	14597	14597					0.034082107938843365
NIMIDPVL	8	Oxidation (M)	_NIM(Oxidation (M))IDPVL_		NIM(1)IDPVL		NIM(42)IDPVL	0	0	1		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4964805698003	1	930.496481	929.489204	1.0025	0.00093286	0.36	0.00033498	1.3625	0.0012678	930.4965054060721	28.339	0.1689	28.33	28.209	28.378	-0.0089779	318	76	1.4304334	0.044530153	1.428914	290.7227	0	9.050354						277	8	4	NaN	NaN	NaN	0.29743	1	6460	6460		42.318	14.529	1	26518			18367	4557	10518	10852	14598	14598		485			0.021639069312755055
NIMIDPVL	8	Oxidation (M)						0	0	1		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.496481	929.489204	1.9478	0.0018125	6.4905	0.0060394	8.4384	0.0078519	930.5034712942189	28.412	0.12067	28.412	28.388	28.508	0	327	70	1.425088	0.04096341	1.425088	289.6363		8.325439	0.041028	0.0036274	-0.0019129	NaN	42.318	127	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13900			18368	4557	10518	10852				485			0.021639069312755055
NIPEVEAVL	9	Unmodified	_NIPEVEAVL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5407882255	1	983.540788	982.533512	2.0619	0.002028	-0.34088	-0.00033527	1.7211	0.0016927	983.5400307736727	28.339	0.21715	28.339	28.243	28.46	0	279	79	1.4535767	0.046239972	1.4535767	295.19345	0	9.390442						212	10	2	NaN	NaN	NaN	0.12866	1	7973	7973		31.675	7.2752	1	33602			18369	1292	10519	10853	14599	14599					0.041546343490949766
NIPEVEAVL	9	Unmodified	_NIPEVEAVL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5407882255	1	983.540788	982.533512	1.4247	0.0014013	-0.29564	-0.00029078	1.1291	0.0011105	983.540494690224	28.363	0.12066	28.354	28.33	28.45	-0.0089779	276	61	1.4553556	0.0355767	1.4538362	295.55472	0	7.2249756						125	6	2	NaN	NaN	NaN	0.084037	1	7801	7801		38.131	2.8343	1	26420			18370	1292	10519	10853	14600	14600					0.041546343490949766
NIRLRWALDFF	11	Unmodified	_NIRLRWALDFF_					0	0	0			REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.9013283349	2	725.901328	1449.7881	1.0725	0.00077852	-10.935	-0.0079374	-9.8621	-0.0071589	725.8933962489489	31.887	0.19309	31.887	31.815	32.008	0	1029	100	1.0028336	0.060354114	1.0028336	405.4893	0	24.403809						597	9	5	NaN	NaN	NaN	0.29515	1	20382	20382		25.801	5.2455	1	105100	+		18371	12662	10520	10854	14601	14601					0.0812012088811116
NIRLRWALDFF	11	Unmodified	_NIRLRWALDFF_					0	0	0			REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.9013283349	2	725.901328	1449.7881	0.81109	0.00058877	-10.681	-0.0077535	-9.8701	-0.0071647	725.8939462350288	31.91	0.21716	31.906	31.834	32.051	-0.0037613	1026	97	1.0046607	0.058522046	1.0031413	406.22806	0	23.663025						630	10	4	NaN	NaN	NaN	0.18551	1	19411	19411		31.675	13.442	1	108610	+		18372	12662	10520	10854	14602	14602					0.0812012088811116
NIRLRWALDFF	11	Unmodified						0	0	0			REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	725.901328	1449.7881	1.0725	0.00077852	-10.935	-0.0079374	-9.8621	-0.0071589	725.8933962489489	31.887	0.19309	31.887	31.815	32.008	0	1029	100	1.0028336	0.060354114	1.0028336	405.4893		24.403809	-0.0096554	-0.00021449	-0.00015385	NaN	31.675	597	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105100	+		18373	12662	10520	10854							0.0812012088811116
NIRLRWALDFF	11	Unmodified						0	0	0			REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	REV__nc|ENSG00000286075|A0A0C4DGP1|SMIM10L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	725.901328	1449.7881	0.81109	0.00058877	-10.681	-0.0077535	-9.8701	-0.0071647	725.8939462350288	31.91	0.21716	31.906	31.834	32.051	-0.0037613	1026	97	1.0046607	0.058522046	1.0031413	406.22806		23.663025	0.0096554	0.00015338	0.00015385	NaN	31.675	630	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108610	+		18374	12662	10520	10854							0.0812012088811116
NISEGIFLF	9	Unmodified	_NISEGIFLF_					0	0	0		CD52|p.G43E|1|0.11|ENSG00000169442|chr1:26320244-26320244|G/A|missense_variant	CD52|p.G43E|1|0.11|ENSG00000169442|chr1:26320244-26320244|G/A|missense_variant	CD52|p.G43E|1|0.11|ENSG00000169442|chr1:26320244-26320244|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5458736034	1	1039.54587	1038.5386	1.476	0.0015344	2.4018	0.0024968	3.8778	0.0040312	1039.5482658682117	35.771	0.28921	35.771	35.723	36.012	0	96	151	1.5617468	0.08848095	1.5617468	316.92404	0	17.955353						795	13	5	NaN	NaN	NaN	0.03618	1	10149	10149		52.78	2.8184	1	197440			18375	88	10521	10855	14603	14603					0.020869382117098212
NITEELIV	8	Unmodified	_NITEELIV_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5142391240001	1	930.514239	929.506963	1.8273	0.0017003	-1.3724	-0.0012771	0.45484	0.00042323	930.513050648771	30.487	0.19307	30.487	30.439	30.632	0	312	76	1.433996	0.04450643	1.433996	291.4467	0	9.045532						334	9	4	NaN	NaN	NaN	0.73961	1	6597	6597		16.584	0	1	81161	+		18376	9310	10522	10856	14604	14604					0.03938945457775844
NITEELIV	8	Unmodified						0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.514239	929.506963	1.8273	0.0017003	-1.3724	-0.0012771	0.45484	0.00042323	930.513050648771	30.487	0.19307	30.487	30.439	30.632	0	312	76	1.433996	0.04450643	1.433996	291.4467		9.045532	-0.056942	-0.00010303	0.0016503	NaN	16.584	334	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81161	+		18377	9310	10522	10856							0.03938945457775844
NITEELIV	8	Unmodified						0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.514239	929.506963	1.1605	0.0010798	-0.48893	-0.00045495	0.67153	0.00062487	930.5142177984947	30.607	0.048277	30.601	30.601	30.649	-0.0057545	315	49	1.4322147	0.028497696	1.4306953	291.08466		5.7919006	0.056942	0.00071908	-0.0016503	NaN	16.584	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6519.7	+		18378	9310	10522	10856							0.03938945457775844
NIVEEEPLM	9	Unmodified	_NIVEEEPLM_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5183382239	1	1073.51834	1072.51106	2.0304	0.0021797	0.024349	2.6139E-05	2.0547	0.0022058	1073.516971923826	25.491	0.14469	25.491	25.443	25.588	0	141	73	1.5352125	0.042484283	1.5352125	311.41006	0	8.617737						263	7	3	NaN	NaN	NaN	0.032689	1	11658	11658		55.592	21.138	1	27789			18379	989	10523	10857	14605	14605					-0.02229333110835796
NIVEEEPLM	9	Unmodified	_NIVEEEPLM_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5183382239	1	1073.51834	1072.51106	1.9521	0.0020956	0.20526	0.00022035	2.1574	0.002316	1073.5179236382971	25.491	0.096542	25.479	25.431	25.527	-0.012011	141	64	1.5352125	0.037175775	1.5336931	311.41006	0	7.5408936						242	5	4	NaN	NaN	NaN	0.012495	1	11357	11357		85.344	32.72	1	26291			18380	989	10523	10857	14606	14606					-0.02229333110835796
NIVEEEPLM	9	Oxidation (M)	_NIVEEEPLM(Oxidation (M))_		NIVEEEPLM(1)		NIVEEEPLM(81)	0	0	1		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.513252846	1	1089.51325	1088.50598	2.0738	0.0022595	0.31349	0.00034155	2.3873	0.002601	1089.5129971765452	21.705	0.096361	21.705	21.657	21.754	0	141	70	1.5352125	0.040720582	1.5352125	311.35193	0	8.258423						146	5	2	NaN	NaN	NaN	0.013959	1	12308	12308		80.901	49.225	1	15406			18381	989	10523	10858	14607	14607		105			-0.03473636973444627
NIVEEEPLM	9	Oxidation (M)	_NIVEEEPLM(Oxidation (M))_		NIVEEEPLM(1)		NIVEEEPLM(75)	0	0	1		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.513252846	1	1089.51325	1088.50598	1.2102	0.0013186	0.042827	4.6661E-05	1.2531	0.0013652	1089.514812986893	21.681	0.096338	21.667	21.643	21.74	-0.013895	138	73	1.5369828	0.042488694	1.5354633	311.71097	0	8.617035						202	5	3	NaN	NaN	NaN	0.017558	1	12002	12002		75.089	41.664	1	18248			18382	989	10523	10858	14608	14608		105			-0.03473636973444627
NIVPADMLL	9	Unmodified	_NIVPADMLL_					0	0	0		ENST00000531925.5_1_19:1789538-1806275:-|nuORF;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.27297810105	2	493.272978	984.531403	1.1736	0.0005789	-3.1804	-0.0015688	-2.0068	-0.00098988	493.2715596187087	33.431	0.21707	33.431	33.383	33.6	0	1293	106	0.84127116	0.064581215	0.84127116	341.67758	0	26.229279						481	10	4	NaN	NaN	NaN	0.028349	1	8038	8038		61.271	2.6721	1	133530			18383	2631	10524	10859	14609	14609					0.03851882339631629
NKAEEKKV	8	Unmodified	_NKAEEKKV_					0	0	0		EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant;ENSG00000095203|ENST00000374566|EPB41L4B	EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant	EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.2718240081	2	473.271824	944.529095	1.2974	0.00061405	-10.352	-0.0048994	-9.0547	-0.0042853	473.26700922108034	18.602	0.14396	18.588	18.54	18.684	-0.014059	1344	37	0.8098828	0.022179246	0.8083634	329.12125	0	9.013245						74	7	2	NaN	NaN	NaN	0.83582	1	6796	6796		4.4131	0	1	5599.9			18384	1120	10525	10860	14610	14610					0.05461169926184084
NKCYAPSAI	9	Unmodified	_NKCYAPSAI_					0	0	0		ENSG00000120685|ENST00000352251|PROSER1;nc|ENSG00000120685|Q86XN7-2|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	ENSG00000120685|ENST00000352251|PROSER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4713284517999	1	966.471328	965.464052	1.2085	0.001168	6.4078	0.006193	7.6164	0.007361	966.4772781623069	22.524	0.38569	22.511	22.39	22.776	-0.013733	294	70	1.4446791	0.040945888	1.4431597	293.45825	0	8.317352						359	17	3	NaN	NaN	NaN	0.41766	1	7342	7342		13.003	1.4544	1	37173			18385	2267	10526	10861	14611	14611					-0.02006147871338726
NKEGYMILF	9	Unmodified	_NKEGYMILF_					0	0	0			REV__nc|ENSG00000154640|Q14201-2|BTG3	REV__nc|ENSG00000154640|Q14201-2|BTG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.78370996285	2	557.78371	1113.55287	1.9194	0.0010706	-0.67933	-0.00037892	1.24	0.00069167	557.7832648488356	26.336	0.16897	26.336	26.288	26.456	0	1197	106	0.9001988	0.06440687	0.9001988	365.02646	0	26.1167						387	8	3	NaN	NaN	NaN	0.35794	1	13426	13426		15.463	0	1	57366	+		18386	13145	10527	10862	14612	14612					0.0006326736834125768
NKEGYMILF	9	Unmodified						0	0	0			REV__nc|ENSG00000154640|Q14201-2|BTG3	REV__nc|ENSG00000154640|Q14201-2|BTG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.78371	1113.55287	1.9194	0.0010706	-0.67933	-0.00037892	1.24	0.00069167	557.7832648488356	26.336	0.16897	26.336	26.288	26.456	0	1197	106	0.9001988	0.06440687	0.9001988	365.02646		26.1167	-0.0063622	-0.00048331	0.00075972	NaN	15.463	387	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57366	+		18387	13145	10527	10862							0.0006326736834125768
NKEGYMILF	9	Unmodified						0	0	0			REV__nc|ENSG00000154640|Q14201-2|BTG3	REV__nc|ENSG00000154640|Q14201-2|BTG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.78371	1113.55287	1.5781	0.00088022	0.1286	7.1731E-05	1.7067	0.00095195	557.783750749631	26.36	0.21716	26.349	26.3	26.517	-0.011135	1197	103	0.9001988	0.0625633	0.8986794	365.02646		25.36914	0.0063622	0.00041799	-0.00075972	NaN	15.463	373	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55481	+		18388	13145	10527	10862							0.0006326736834125768
NKEWWLAE	8	Unmodified	_NKEWWLAE_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5207214854	1	1075.52072	1074.51345	0.97563	0.0010493	-7.3423	-0.0078968	-6.3667	-0.0068475	1075.5135165477925	33.695	0.072392	33.694	33.67	33.742	-0.0018501	117	73	1.5493695	0.042470813	1.54785	314.27432	0	8.614777						139	4	2	NaN	NaN	NaN	0.78967	1	11441	11441		10.605	0.85897	1	10494			18389	6053	10528	10863	14613	14613					-0.020831165908703042
NKFNYTEFTTP	11	Unmodified	_NKFNYTEFTTP_					0	0	0		SERPINE1|p.M258Nfs*8|1|0.3|ENSG00000106366|chr7:101133765-101133766|-/A|frameshift_variant;nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	SERPINE1|p.M258Nfs*8|1|0.3|ENSG00000106366|chr7:101133765-101133766|-/A|frameshift_variant	SERPINE1|p.M258Nfs*8|1|0.3|ENSG00000106366|chr7:101133765-101133766|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.55058691313326	3	454.550587	1360.62993	0.45735	0.00020789	-1.012	-0.00046002	-0.55468	-0.00025213	454.55012612610983	30.873	0.14478	30.873	30.849	30.994	0	1398	46	0.77658504	0.027773678	0.77658504	471.29874	0	16.8555						182	7	3	NaN	NaN	NaN	0.6875	1	19689	19689		5.9336	2.0329	1	21939			18390	1597	10529	10864	14614	14614					-0.035958428816456944
NKGGAVLP	8	Unmodified	_NKGGAVLP_					0	0	0			REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF	REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.4410146014001	1	755.441015	754.433738	-0.084253	-6.3648E-05	2.1727	0.0016413	2.0884	0.0015777	755.4425786304229	55.819	0.047958	55.818	55.818	55.866	-0.00059128	582	52	1.2729256	0.030569077	1.2714062	259.58524	0	6.233856						66	3	2	NaN	NaN	NaN	0.84876	1	4072	4072		0.39566	0	1	8865.1	+		18391	12737	10530	10865	14615	14615					0.046698615258037535
NKGGAVLP	8	Unmodified						0	0	0			REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF	REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	755.441015	754.433738	-0.084253	-6.3648E-05	2.1727	0.0016413	2.0884	0.0015777	755.4425786304229	55.819	0.047958	55.818	55.818	55.866	-0.00059128	582	52	1.2729256	0.030569077	1.2714062	259.58524		6.233856	-0.0013843	0.00044121	0.00013947	NaN	0.39566	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8865.1	+		18392	12737	10530	10865							0.046698615258037535
NKGRNEPLL	9	Unmodified	_NKGRNEPLL_					0	0	0			REV__nc|ENSG00000127329|P23467-2|PTPRB	REV__nc|ENSG00000127329|P23467-2|PTPRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7959975961501	2	520.795998	1039.57744	1.7208	0.00089618	-11.012	-0.0057351	-9.2914	-0.0048389	520.7901372142273	19.516	0.14396	19.516	19.444	19.588	0	1281	46	0.84864825	0.027659655	0.84864825	344.4222	0	11.225616						146	7	2	NaN	NaN	NaN	0.2345	1	10205	10205		23.118	5.3186	1	27033	+		18393	9434	10531	10866	14616	14616					0.05923663566090909
NKHKHKGVAAS	11	Unmodified	_NKHKHKGVAAS_					0	0	0		NLRC4|p.F931Lfs*6|1|0.35|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant;ENSG00000091106|ENST00000402280|NLRC4	NLRC4|p.F931Lfs*6|1|0.35|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	NLRC4|p.F931Lfs*6|1|0.35|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8334457349501	2	588.833446	1175.65234	1.2108	0.00071294	1.1806	0.00069519	2.3914	0.0014081	588.8344762281465	21.296	0.096186	21.282	21.258	21.354	-0.014006	1128	37	0.9424274	0.022005022	0.94090796	381.90305	0	8.917175						124	5	3	NaN	NaN	NaN	0.688	1	15109	15109		8.2448	0.70444	1	11476			18394	1071	10532	10867	14617	14617					0.07153846097344285
NKKILHGS	8	Unmodified	_NKKILHGS_					0	0	0		ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.76925152940004	2	448.769252	895.52395	0.66761	0.0002996	0.62764	0.00028166	1.2952	0.00058127	448.77002490322474	41.063	0.1683	41.07	40.974	41.143	0.0074959	1395	34	0.7784366	0.020367384	0.77691716	316.5902	0	8.283417						130	8	2	NaN	NaN	NaN	0.84692	1	5884	5884		1.4396	0	1	14144			18395	6953	10533	10868	14618	14618					0.07200910854237463
NKKILHGS	8	Unmodified						0	0	0		ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	448.769252	895.52395	0.4324	0.00019405	0.020486	9.1935E-06	0.45288	0.00020324	448.7694931015237	41.065	0.096107	41.065	41.017	41.113	0	1404	40	0.77288127	0.024073124	0.77288127	314.33084		9.790558	-0.0028277	-0.00036955	-0.002018	NaN	1.4396	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6886.9			18396	6953	10533	10868							0.07200910854237463
NKNDHLQE	8	Unmodified	_NKNDHLQE_					0	0	0		nc|ENSG00000166323|Q8NCR3-2|MFI;ENSG00000166323|ENST00000393084|C11orf65	nc|ENSG00000166323|Q8NCR3-2|MFI	nc|ENSG00000166323|Q8NCR3-2|MFI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.4697485474001	1	997.469749	996.462472	1.805	0.0018004	-8.1963	-0.0081756	-6.3914	-0.0063752	997.4624793726651	28.798	0.072405	28.798	28.774	28.846	0	222	94	1.4873441	0.05508852	1.4873441	301.99258	0	11.185242						149	4	2	NaN	NaN	NaN	0.7718	1	8433	8433		13.003	0.41496	1	19259			18397	4468	10534	10869	14619	14619					-0.0359006563571711
NKPKLIFH	8	Unmodified	_NKPKLIFH_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	332.8711550533667	3	332.871155	995.591636	1.464	0.00048731	-0.41879	-0.0001394	1.0452	0.0003479	332.87111877227676	20.983	0.12033	20.969	20.897	21.017	-0.014088	1485	43	0.72280174	0.026005268	0.7212823	440.26932	0	15.840179						104	6	2	NaN	NaN	NaN	0.84606	1	8259	8259		1.9246	0	1	8179.1	+		18398	11000	10535	10870	14620	14620					0.09366360785043071
NKPKLIFH	8	Unmodified						0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	332.871155	995.591636	1.4665	0.00048814	-1.0234	-0.00034067	0.44304	0.00014747	332.8709944595685	20.838	0.12049	20.838	20.766	20.887	0	1482	37	0.72465914	0.022285342	0.72465914	441.4007		13.574341	-0.065323	-0.00034499	0.0016884	NaN	1.9246	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8644.7	+		18399	11000	10535	10870							0.09366360785043071
NKPKLIFH	8	Unmodified						0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	332.871155	995.591636	1.464	0.00048731	-0.41879	-0.0001394	1.0452	0.0003479	332.87111877227676	20.983	0.12033	20.969	20.897	21.017	-0.014088	1485	43	0.72280174	0.026005268	0.7212823	440.26932		15.840179	0.065323	0.0002588	-0.0016884	NaN	1.9246	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8179.1	+		18400	11000	10535	10870							0.09366360785043071
NKQAEKIMS	9	Unmodified	_NKQAEKIMS_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.776416247	2	524.776416	1047.53828	1.5846	0.00083154	-0.27915	-0.00014649	1.3054	0.00068504	524.774612672056	23.61	0.12047	23.61	23.562	23.682	0	1269	76	0.8560222	0.04607457	0.8560222	347.38034	0	18.697418						169	6	3	NaN	NaN	NaN	0.51576	1	10532	10532		8.962	0	1	30737	+		18401	9262	10536	10871	14621	14621					0.01641195220213376
NKQAEKIMS	9	Unmodified						0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.776416	1047.53828	1.5846	0.00083154	-0.27915	-0.00014649	1.3054	0.00068504	524.774612672056	23.61	0.12047	23.61	23.562	23.682	0	1269	76	0.8560222	0.04607457	0.8560222	347.38034		18.697418	0.0066565	-0.00037225	0.00075972	NaN	8.962	169	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30737	+		18402	9262	10536	10871							0.01641195220213376
NKQAEKIMS	9	Unmodified						0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	524.776416	1047.53828	1.6385	0.00085987	0.50238	0.00026363	2.1409	0.0011235	524.7735261510779	23.609	0.16873	23.596	23.548	23.717	-0.013048	1269	64	0.8560222	0.03871101	0.85450274	347.38034		15.7092285	-0.0066565	0.000448	-0.00075972	NaN	8.962	212	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35193	+		18403	9262	10536	10871							0.01641195220213376
NKRRRYFEKTR	11	Unmodified	_NKRRRYFEKTR_					0	0	0			REV__ENST00000358780.9_2_11:95513079-95516427:-|nuORF	REV__ENST00000358780.9_2_11:95513079-95516427:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.6305685686333	3	518.630569	1552.86988	0.96594	0.00050097	-10.499	-0.005445	-9.5329	-0.004944	518.6249851583174	32.73	0.096554	32.727	32.679	32.776	-0.0031052	1317	49	0.8265074	0.029543579	0.82498795	500.97183	0	17.907288						113	5	2	NaN	NaN	NaN	0.77178	1	19676	19676		1.6806	0.155	1	13698	+		18404	11830	10537	10872	14622	14622					0.1155561629989279
NKTVSQRFG	9	Unmodified	_NKTVSQRFG_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5534185973	1	1036.55342	1035.54614	1.0471	0.0010854	-9.3092	-0.0096495	-8.262	-0.008564	1036.5422856739995	31.066	0.072412	31.066	31.042	31.115	0	141	43	1.5352125	0.024787784	1.5352125	311.5513	0	5.030365						52	4	2	NaN	NaN	NaN	0.59509	1	10016	10016		5.6942	0.50528	1	3622.4			18405	2304	10538	10873	14623	14623					0.029790905319941885
NKWGETPL	8	Unmodified	_NKWGETPL_					0	0	0		UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	UBE2G1-ANKFY1|7|fusion	UBE2G1-ANKFY1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.74544208209994	2	472.745442	943.476331	1.675	0.00079184	-2.0787	-0.00098271	-0.40375	-0.00019087	472.74439854327375	20.092	0.048094	20.078	20.054	20.102	-0.014141	1329	28	0.81912065	0.016622722	0.8176012	332.88065	0	6.7552795						32	3	2	NaN	NaN	NaN	0.81251	1	6764	6764		7.5404	0	1	2190.7			18406	5431	10539	10874	14624	14624					0.002332118633717073
NKWYEDLS	8	Unmodified	_NKWYEDLS_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-3|NEK11	REV__nc|ENSG00000114670|Q8NG66-3|NEK11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.74563904735	2	527.745639	1053.47673	1.0182	0.00053734	8.4101	0.0044384	9.4282	0.0049757	528.2509596130855	33.816	0.07243	33.814	33.79	33.863	-0.0018463	1305	70	0.83389086	0.042416096	0.8323714	338.37448	0	17.211517						81	4	2	NaN	NaN	NaN	0.82797	1	10554	10554		5.4659	0.55612	1	4219.8	+		18407	13108	10540	10875	14625	14625					-0.047874132074412046
NKYTCIDYR	9	Unmodified	_NKYTCIDYR_					0	0	0			REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.5219742066666	3	392.521974	1174.54409	1.6625	0.00065257	-5.5884	-0.0021936	-3.9259	-0.001541	392.51983339503704	36.348	0.12038	36.35	36.326	36.446	0.0016747	1488	34	0.7209441	0.020436049	0.71942466	438.2264	0	12.422028						82	6	2	NaN	NaN	NaN	0.42817	1	15069	15069		8.3538	1.3694	1	8153.6	+		18408	8486	10541	10876	14626	14626					-0.036197062681594616
NKYTCIDYR	9	Unmodified						0	0	0			REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	392.521974	1174.54409	1.1013	0.00043228	-6.5115	-0.0025559	-5.4102	-0.0021236	392.5191092998243	36.374	0.096428	36.374	36.326	36.422	0	1494	28	0.7172283	0.016722202	0.7172283	435.96774		10.164581	0.012085	-0.00061452	-0.0010982	NaN	8.3538	108	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9464	+		18409	8486	10541	10876							-0.036197062681594616
NKYTCIDYR	9	Unmodified						0	0	0			REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	REV__ENST00000381052.8_1_5:64593037-64747992:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	392.521974	1174.54409	1.6625	0.00065257	-5.5884	-0.0021936	-3.9259	-0.001541	392.51983339503704	36.348	0.12038	36.35	36.326	36.446	0.0016747	1488	34	0.7209441	0.020436049	0.71942466	438.2264		12.422028	-0.012085	0.00047249	0.0010982	NaN	8.3538	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8153.6	+		18410	8486	10541	10876							-0.036197062681594616
NLAKVESAI	9	Unmodified	_NLAKVESAI_					0	0	0			REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.77419952155	2	472.7742	943.533846	1.5006	0.00070943	-1.762	-0.00083304	-0.26144	-0.0001236	472.7735917677222	16.854	0.21579	16.854	16.806	17.021	0	1347	40	0.8080346	0.024026215	0.8080346	328.37512	0	9.763977						153	10	3	NaN	NaN	NaN	0.33629	1	6916	6916		16.584	1.1215	1	23689	+		18411	10925	10542	10877	14627	14627					0.059820540689429436
NLAPCPPK	8	Unmodified	_NLAPCPPK_					0	0	0			REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.2258309432	2	420.225831	838.437109	1.6058	0.0006748	7.2015	0.0030263	8.8073	0.0037011	420.2291397266933	55.1	0.072285	55.1	55.076	55.148	0	1398	52	0.77658504	0.031480253	0.77658504	316.16162	0	12.816193						121	4	3	NaN	NaN	NaN	0.84455	1	5249	5249		2.7852	0.32367	1	27107	+		18412	12454	10543	10878	14628	14628					0.01142788308152376
NLDAHAGT	8	Unmodified	_NLDAHAGT_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.3740572482001	1	798.374057	797.366781	1.9114	0.001526	6.627	0.0052908	8.5384	0.0068168	798.3802951407108	24.936	0.072386	24.924	24.9	24.972	-0.012392	474	55	1.3375392	0.03225851	1.3360198	272.49936	0	6.572113						79	4	2	NaN	NaN	NaN	0.80692	1	4628	4628		8.2903	0	1	6192.5	+		18413	8549	10544	10879	14629	14629					-0.04000793755949417
NLEEPLIAF	9	Unmodified	_NLEEPLIAF_					0	0	0			REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5564382897	1	1045.55644	1044.54916	1.4952	0.0015633	-3.0796	-0.0032199	-1.5844	-0.0016566	1046.5560809648962	30.753	0.16892	30.753	30.728	30.897	0	141	106	1.5352125	0.061979175	1.5352125	311.51596	0	12.576447						348	8	3	NaN	NaN	NaN	0.02857	1	10404	10404		60.982	10.667	1	64723	+		18414	13404	10545	10880	14630	14630					0.028669208661540324
NLEEPLIAF	9	Unmodified						0	0	0			REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	REV__tr|U7SJH4|U7SJH4_FUSNUInnermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02143PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1045.55644	1044.54916	1.4952	0.0015633	-3.0796	-0.0032199	-1.5844	-0.0016566	1046.5560809648962	30.753	0.16892	30.753	30.728	30.897	0	141	106	1.5352125	0.061979175	1.5352125	311.51596		12.576447	0	0	0	NaN	60.982	348	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64723	+		18415	13404	10545	10880							0.028669208661540324
NLEITHTSN	9	Unmodified	_NLEITHTSN_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5007143248001	1	1028.50071	1027.49344	2.098	0.0021578	-3.6131	-0.0037161	-1.5151	-0.0015582	1028.496564293247	25.395	0.048275	25.395	25.371	25.419	0	165	58	1.5210435	0.033670902	1.5210435	308.70767	0	6.83374						100	3	3	NaN	NaN	NaN	0.35794	1	9657	9657		15.463	1.5139	1	9178.8			18416	6083	10546	10881	14631	14631					-0.01920912321452306
NLEITHTSN	9	Unmodified						0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1028.50071	1027.49344	1.905	0.0019593	-1.7264	-0.0017756	0.17861	0.0001837	1028.501694525347	25.394	0.048239	25.382	25.358	25.407	-0.012011	162	82	1.5228153	0.04786837	1.5212959	309.06726		9.7152405	-0.0061507	0.0011962	0.00012617	NaN	15.463	110	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11060			18417	6083	10546	10881							-0.01920912321452306
NLFNLSSSNI	10	Unmodified	_NLFNLSSSNI_					0	0	0		nc|ENSG00000132321|Q86XH1-2|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	nc|ENSG00000132321|Q86XH1-2|IQCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7852955241001	2	554.785296	1107.55604	0.7948	0.00044094	0.39048	0.00021663	1.1853	0.00065758	554.7851323821694	33.021	0.16896	33.021	32.973	33.142	0	1230	91	0.8799654	0.055220783	0.8799654	356.84552	0	22.39325						329	8	4	NaN	NaN	NaN	0.5358	1	13178	13178		17.97	1.1114	1	48381			18418	2747	10547	10882	14632	14632					0.006562337467130419
NLGAPGEA	8	Unmodified	_NLGAPGEA_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.3573445515001	1	728.357345	727.350068	1.3666	0.00099539	3.256	0.0023715	4.6226	0.0033669	728.3596795692133	24.84	0.096523	24.84	24.791	24.888	0	606	37	1.2585332	0.021600008	1.2585332	256.8208	0	4.407776						65	5	2	NaN	NaN	NaN	0.80692	1	3729	3729		8.2903	2.2	1	4835.6	+		18419	11439	10548	10883	14633	14633					-0.024512946419008586
NLGAPGEA	8	Unmodified						0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	728.357345	727.350068	1.3666	0.00099539	3.256	0.0023715	4.6226	0.0033669	728.3596795692133	24.84	0.096523	24.84	24.791	24.888	0	606	37	1.2585332	0.021600008	1.2585332	256.8208		4.407776	0	0	0	NaN	8.2903	65	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4835.6	+		18420	11439	10548	10883							-0.024512946419008586
NLGLGQTFY	9	Unmodified	_NLGLGQTFY_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5098224481	1	1012.50982	1011.50255	1.9117	0.0019356	-8.1768	-0.0082791	-6.2651	-0.0063435	1012.5012796317061	30.607	0.04826	30.601	30.577	30.625	-0.0057545	180	43	1.5121819	0.024819255	1.5106624	306.9734	0	5.03833						53	3	2	NaN	NaN	NaN	0.35794	1	8862	8862		15.463	3.9142	1	3924.4	+		18421	9288	10549	10884	14634	14634					-0.0027451896515913177
NLGLGQTFY	9	Unmodified						0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1012.50982	1011.50255	1.5974	0.0016173	-5.5786	-0.0056484	-3.9812	-0.004031	1012.5019820482403	30.608	0.072433	30.608	30.584	30.656	0	186	34	1.5086359	0.019503951	1.5086359	306.25354		3.95932	0.0033951	0.0013388	-0.0010133	NaN	15.463	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3727.4	+		18422	9288	10549	10884							-0.0027451896515913177
NLGLGQTFY	9	Unmodified						0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.50982	1011.50255	1.9117	0.0019356	-8.1768	-0.0082791	-6.2651	-0.0063435	1012.5012796317061	30.607	0.04826	30.601	30.577	30.625	-0.0057545	180	43	1.5121819	0.024819255	1.5106624	306.9734		5.03833	-0.0033951	-0.0012919	0.0010133	NaN	15.463	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3924.4	+		18423	9288	10549	10884							-0.0027451896515913177
NLIKRHYH	8	Unmodified	_NLIKRHYH_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8066996682	2	540.8067	1079.59885	1.6061	0.00086856	-1.2988	-0.00070239	0.30727	0.00016617	540.805363220486	27.591	0.072409	27.591	27.543	27.615	0	1257	43	0.86339295	0.025789201	0.86339295	350.23642	0	10.461426						58	4	2	NaN	NaN	NaN	0.76633	1	11973	11973		13.737	0	1	3892.7	+		18424	8627	10550	10885	14635	14635					0.06223093385460743
NLIYIHPMIIH	11	Unmodified	_NLIYIHPMIIH_					0	0	0		SLC9C2|p.Y622H|1|0.69|ENSG00000162753|chr1:173534594-173534594|A/G|missense_variant	SLC9C2|p.Y622H|1|0.69|ENSG00000162753|chr1:173534594-173534594|A/G|missense_variant	SLC9C2|p.Y622H|1|0.69|ENSG00000162753|chr1:173534594-173534594|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3813828450001	2	682.381383	1362.74821	1.7599	0.0012009	-5.0933	-0.0034755	-3.3333	-0.0022746	682.3778087659051	20.045	0.14417	20.045	19.997	20.141	0	1065	31	0.9808926	0.018296003	0.9808926	396.8569	0	7.4023438						141	7	4	NaN	NaN	NaN	0.76304	1	19725	19725		3.2116	0.32214	1	9798			18425	13678	10551	10886	14636	14636					0.08134857893196568
NLKAGGYKR	9	Unmodified	_NLKAGGYKR_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.79325794195	2	503.793258	1005.57196	1.8883	0.00095133	-0.22878	-0.00011526	1.6596	0.00083608	503.79330405858616	23.393	0.12056	23.393	23.345	23.465	0	1434	52	0.75435036	0.031517863	0.75435036	306.28683	0	12.797119						134	6	3	NaN	NaN	NaN	0.56671	1	8817	8817		6.8632	3.2934	1	11479	+		18426	9796	10552	10887	14637	14637					0.06939984774271579
NLLHACLTL	9	Unmodified	_NLLHACLTL_					0	0	0			REV__ENST00000209875.8_1_12:54626321-54626351:-|nuORF	REV__ENST00000209875.8_1_12:54626321-54626351:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5499131238001	1	997.549913	996.542637	2.326	0.0023203	2.1732	0.0021679	4.4992	0.0044882	997.5523944066503	26.288	0.024136	26.288	26.263	26.288	0	246	67	1.4731345	0.039105415	1.4731345	299.1071	0	7.9400024						76	2	2	NaN	NaN	NaN	0.49672	1	8452	8452		9.746	0	1	10236	+		18427	11452	10553	10888	14638	14638					0.044227044337844745
NLLVSSFGG	9	Unmodified	_NLLVSSFGG_					0	0	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.4727086603002	1	893.472709	892.465432	2.5699	0.0022961	-6.504	-0.0058111	-3.9341	-0.003515	893.4701407802485	26.118	0.048248	26.107	26.083	26.131	-0.011137	417	46	1.3715409	0.026817799	1.3700215	278.92212	0	5.453766						67	3	3	NaN	NaN	NaN	0.49999	1	5842	5842		9.6116	0.48844	1	3752.6	+		18428	9014	10554	10889	14639	14639					0.014898094891123037
NLMYAMAV	8	Unmodified	_NLMYAMAV_					0	0	0		tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4317718230001	1	912.431772	911.424495	2.0257	0.0018484	-5.3526	-0.0048839	-3.3269	-0.0030355	912.4265676571724	26.432	0.096546	26.432	26.408	26.505	0	306	70	1.4375578	0.040976405	1.4375578	292.25522	0	8.330505						100	5	2	NaN	NaN	NaN	0.79379	1	6240	6240		10.052	3.1884	1	8696.4			18429	13883	10555	10890	14640	14640					-0.03475991146387969
NLNWGDDCITG	11	Unmodified	_NLNWGDDCITG_					0	0	0			REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.2560449456499	2	604.256045	1206.49754	0.62605	0.0003783	-8.1685	-0.0049359	-7.5425	-0.0045576	604.752450677445	33.962	0.12066	33.962	33.914	34.035	0	1200	85	0.89836043	0.05146706	0.89836043	363.9377	0	20.850006						135	6	2	NaN	NaN	NaN	0.7072	1	16634	16634		6.9844	0.55443	1	17809	+		18430	10770	10556	10891	14641	14641					-0.09745190890089361
NLPEEYEL	8	Unmodified	_NLPEEYEL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.4727682398001	1	1006.47277	1005.46549	1.7142	0.0017252	2.1989	0.0022131	3.913	0.0039383	1006.4749807365815	24.695	0.21714	24.695	24.647	24.864	0	306	151	1.4375578	0.08890438	1.4375578	291.8482	0	18.049042						631	10	3	NaN	NaN	NaN	0.067757	1	8786	8786		73.133	17.639	1	81910			18431	2061	10557	10892	14642	14642					-0.03702235301557266
NLPEEYEL	8	Unmodified	_NLPEEYEL_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4727682398001	1	1006.47277	1005.46549	1.4987	0.0015084	1.6262	0.0016367	3.1249	0.0031452	1006.4745175649438	24.719	0.24119	24.707	24.634	24.875	-0.012392	306	142	1.4375578	0.08356559	1.4360384	291.8482	0	16.96521						446	11	2	NaN	NaN	NaN	0.030419	1	8613	8613		106.56	42.008	1	66997			18432	2061	10557	10892	14643	14643					-0.03702235301557266
NLPQHPDVEM	10	Oxidation (M)	_NLPQHPDVEM(Oxidation (M))_		NLPQHPDVEM(1)		NLPQHPDVEM(67)	0	0	1		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.2742376988	2	598.274238	1194.53392	1.5428	0.00092301	-1.6265	-0.0009731	-0.083732	-5.0094E-05	598.2739146534445	15.726	0.2879	15.726	15.654	15.942	0	1218	61	0.8873258	0.03679794	0.8873258	359.50812	0	14.909027						435	13	3	NaN	NaN	NaN	0.013678	1	16284	16284		66.544	33.118	1	82111			18433	4072	10558	10893	14644	14644		438			-0.05556313993361073
NLPVKQWYF	9	Unmodified	_NLPVKQWYF_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8189413762001	2	597.818941	1193.62333	1.8498	0.0011058	-1.646	-0.00098401	0.20378	0.00012182	597.8175244292303	26.167	0.12064	26.167	26.143	26.263	0	1173	70	0.91489893	0.04222858	0.91489893	370.68286	0	17.109436						273	6	4	NaN	NaN	NaN	0.29681	1	16266	16266		19.118	7.0696	1	52376			18434	1013	10559	10894	14645	14645					0.03426308748316842
NLQETLKERQ	10	Unmodified	_NLQETLKERQ_					0	0	0		DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.L507Sfs*24|1|0.33|ENSG00000124721|chr6:38781276-38781277|-/C|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant	DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.22984774306667	3	420.229848	1257.66771	1.2456	0.00052345	3.1686	0.0013316	4.4143	0.001855	420.5649507165134	14.693	0.12004	14.693	14.669	14.789	0	1428	43	0.7580582	0.025954425	0.7580582	460.43304	0	15.764374						135	6	4	NaN	NaN	NaN	0.77024	1	17958	17958		1.2289	0.34431	1	8684.5			18435	264	10560	10895	14646	14646					0.04918668103869095
NLQKITHISEL	11	Unmodified	_NLQKITHISEL_					0	0	0		FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.3695266800001	2	648.369527	1294.7245	1.4619	0.00094785	5.0944	0.0033031	6.5563	0.0042509	648.3731275912367	39.042	0.1926	39.047	38.927	39.119	0.0046806	1197	91	0.9001988	0.055149198	0.8986794	364.40125	0	22.324463						376	9	3	NaN	NaN	NaN	0.76488	1	17846	17846		2.8895	0.29002	1	78568			18436	7799	10561	10896	14647	14647					0.08892715660385875
NLSATVGE	8	Unmodified	_NLSATVGE_					0	0	0		ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.3941239883001	1	790.394124	789.386848	2.0147	0.0015924	-5.1766	-0.0040916	-3.162	-0.0024992	790.3908118053996	27.808	0.048264	27.798	27.774	27.822	-0.009552	537	40	1.2998781	0.023338914	1.2983587	264.87198	0	4.755707						51	3	2	NaN	NaN	NaN	0.82797	1	4533	4533		5.4659	0	1	3266.4			18437	7497	10562	10897	14648	14648					-0.01627042815994173
NLSGGSSK	8	Unmodified	_NLSGGSSK_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3788082751001	1	749.378808	748.371532	1.8897	0.0014161	4.4063	0.003302	6.296	0.0047181	749.3820982999501	24.984	0.19306	24.972	24.875	25.068	-0.012392	591	46	1.26753	0.026981354	1.2660105	258.52228	0	5.5030365						108	9	2	NaN	NaN	NaN	0.7718	1	3947	3947		13.003	2.3979	1	6718			18438	5982	10563	10898	14649	14649					-0.012719096131831975
NLSGVGGT	8	Unmodified	_NLSGVGGT_					0	0	0			REV__ENST00000549897.1_1_12:58087944-58088778:+|nuORF	REV__ENST00000549897.1_1_12:58087944-58088778:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3573445515002	1	704.357345	703.350068	1.393	0.00098115	0.65725	0.00046294	2.0502	0.0014441	704.3578740620632	27.132	0.072397	27.122	27.098	27.17	-0.010126	687	46	1.2098682	0.027082562	1.2083488	247.04576	0	5.5300293						57	4	2	NaN	NaN	NaN	0.8439	1	3217	3217		3.1533	0	1	3683.5	+		18439	9623	10564	10899	14650	14650					-0.013472946418914944
NLSKSDIEF	9	Unmodified	_NLSKSDIEF_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5258664428	1	1052.52587	1051.51859	1.4522	0.0015285	3.7221	0.0039176	5.1743	0.0054461	1052.5306432707105	28.097	0.072399	28.088	28.064	28.137	-0.0089798	147	67	1.5316714	0.03896463	1.530152	310.77054	0	7.905792						88	4	2	NaN	NaN	NaN	0.54912	1	10471	10471		7.5876	0.7936	1	8588.1			18440	13762	10565	10900	14651	14651					-0.005108575189069597
NLSKSDIEF	9	Unmodified						0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.52587	1051.51859	2.3238	0.0024458	4.7585	0.0050084	7.0822	0.0074542	1052.5315812588133	28.098	0.12068	28.098	28.05	28.17	0	147	52	1.5316714	0.03010416	1.5316714	310.77054		6.108032	0.0048604	0.00051149	0.00075972	NaN	7.5876	112	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11496			18441	13762	10565	10900							-0.005108575189069597
NLTWDILHQ	9	Unmodified	_NLTWDILHQ_					0	0	0		CON__P28800	CON__P28800	CON__P28800	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.53297910263336	3	380.532979	1138.57711	1.4568	0.00055435	6.6245	0.0025208	8.0812	0.0030752	380.53564021879214	13.757	0.21575	13.746	13.627	13.842	-0.010673	1527	40	0.69677675	0.024183095	0.6952573	423.6912	0	14.705109						144	10	2	NaN	NaN	NaN	0.41766	1	13933	13933		8.2775	1.8476	1	12407		+	18442	199	10566	10901	14652	14652					0.013362438462309001
NLYTSFFSLF	10	Unmodified	_NLYTSFFSLF_					0	0	0			REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.80823930415	2	619.808239	1237.60193	0.93017	0.00057652	5.2005	0.0032233	6.1307	0.0037998	619.8129504166811	27.253	0.38611	27.242	27.098	27.484	-0.010126	1140	97	0.93509084	0.058724344	0.9335714	378.70996	0	23.783264						781	17	5	NaN	NaN	NaN	0.27719	1	16736	16736		28.896	4.4953	1	179690	+		18443	12087	10567	10902	14653	14653					-0.007371210710743981
NLYVQEEPL	9	Unmodified	_NLYVQEEPL_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7822215189001	2	552.782222	1103.54989	1.2444	0.00068788	-5.3269	-0.0029446	-4.0825	-0.0022567	552.7793179969822	20.237	0.14414	20.237	20.117	20.261	0	1245	58	0.87076044	0.034986377	0.87076044	353.12848	0	14.188416						130	7	2	NaN	NaN	NaN	0.27608	1	12987	12987		20.449	1.2851	1	15351	+		18444	8934	10568	10903	14654	14654					0.0022571551519376953
NMFAEKNMINE	11	Unmodified	_NMFAEKNMINE_					0	0	0			REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	REV__ENST00000483488.1_1_10:62637742-62648222:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.8023050340001	2	670.802305	1339.59006	1.5025	0.0010079	-11.033	-0.007401	-9.5305	-0.0063931	671.2969841490296	21.561	0.096331	21.547	21.523	21.619	-0.013895	1149	67	0.92958635	0.040364265	0.9280669	376.16434	0	16.33371						141	5	3	NaN	NaN	NaN	0.77168	1	18531	18531		1.6985	0.52167	1	10079	+		18445	8586	10569	10904	14655	14655					-0.06615429148178009
NMFARLWL	8	Unmodified	_NMFARLWL_					0	0	0		ENST00000410026.6_1_2:192560589-192560754:+|nuORF	ENST00000410026.6_1_2:192560589-192560754:+|nuORF	ENST00000410026.6_1_2:192560589-192560754:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.85662859530004	3	350.856629	1049.54806	1.9242	0.00067513	2.6758	0.00093881	4.6	0.0016139	350.85778768747724	17.405	0.095984	17.405	17.381	17.477	0	1467	67	0.7339432	0.04085648	0.7339432	446.74295	0	24.868896						110	5	2	NaN	NaN	NaN	0.84727	1	10623	10623		0.69115	0	1	12444			18446	6867	10570	10905	14656	14656					0.025264280162446084
NMFDLSRAEY	10	Unmodified	_NMFDLSRAEY_					0	0	0			REV__ENSG00000089101|ENST00000245957|CFAP61	REV__ENSG00000089101|ENST00000245957|CFAP61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.2820627309001	2	623.282063	1244.54957	0.78672	0.00049035	4.3683	0.0027227	5.155	0.003213	623.2842543198027	24.647	0.16883	24.634	24.538	24.707	-0.012394	1155	85	0.92591566	0.051383734	0.9243962	374.97092	0	20.809052						305	8	3	NaN	NaN	NaN	0.5358	1	16881	16881		17.97	2.1478	1	38791	+		18447	8198	10571	10906	14657	14657					-0.06292027476320072
NMFDLSRAEY	10	Unmodified						0	0	0			REV__ENSG00000089101|ENST00000245957|CFAP61	REV__ENSG00000089101|ENST00000245957|CFAP61	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.282063	1244.54957	0.78672	0.00049035	4.3683	0.0027227	5.155	0.003213	623.2842543198027	24.647	0.16883	24.634	24.538	24.707	-0.012394	1155	85	0.92591566	0.051383734	0.9243962	374.97092		20.809052	-0.0062555	0.00077178	-0.0016774	NaN	17.97	305	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38791	+		18448	8198	10571	10906							-0.06292027476320072
NMGVMGFV	8	Unmodified	_NMGVMGFV_					0	0	0		tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.3899070083002	1	854.389907	853.382631	1.956	0.0016712	4.4406	0.003794	6.3967	0.0054652	854.3938051570282	29.787	0.048277	29.787	29.763	29.811	0	459	55	1.3464937	0.032237887	1.3464937	274.01868	0	6.560608						51	3	2	NaN	NaN	NaN	0.82332	1	5437	5437		6.0903	2.1218	1	3709.7			18449	13856	10572	10907	14658	14658					-0.04992546834910172
NMKGTQLR	8	Unmodified	_NMKGTQLR_					0	0	0			REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.2581937041	2	474.258194	946.501834	0.43636	0.00020695	-6.1415	-0.0029127	-5.7052	-0.0027057	474.2551176640911	22.235	0.19283	22.222	22.173	22.366	-0.013731	1359	37	0.8006399	0.022188902	0.7991205	325.35538	0	9.016907						124	9	2	NaN	NaN	NaN	0.84727	1	6865	6865		1.2418	0	1	19562	+		18450	12435	10573	10908	14659	14659					0.026443631141546575
NMKGTQLR	8	Unmodified						0	0	0			REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.258194	946.501834	1.4759	0.00069997	-7.3544	-0.0034879	-5.8784	-0.0027879	474.25461547865353	22.212	0.14472	22.212	22.187	22.332	0	1359	49	0.8006399	0.029582024	0.8006399	325.35538		12.02121	-0.0049873	-0.00063352	0.00075972	NaN	1.2418	159	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22499	+		18451	12435	10573	10908							0.026443631141546575
NMKGTQLR	8	Unmodified						0	0	0			REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	474.258194	946.501834	0.43636	0.00020695	-6.1415	-0.0029127	-5.7052	-0.0027057	474.2551176640911	22.235	0.19283	22.222	22.173	22.366	-0.013731	1359	37	0.8006399	0.022188902	0.7991205	325.35538		9.016907	0.0049873	0.00051687	-0.00075972	NaN	1.2418	124	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19562	+		18452	12435	10573	10908							0.026443631141546575
NMLFCDSCDR	10	Unmodified	_NMLFCDSCDR_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000083168|ENST00000265713|KAT6A;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.23320101355	2	602.233201	1202.45185	1.7735	0.0010681	6.2313	0.0037527	8.0048	0.0048208	602.2375199868758	28.026	0.2413	28.026	27.977	28.219	0	1194	97	0.902037	0.058806837	0.902037	365.44098	0	23.82431						579	9	5	NaN	NaN	NaN	0.65442	1	16533	16533		11.17	0.56537	1	162470			18453	942	10574	10909	14660	14660					-0.1412787566832776
NMVLEILDVSG	11	Unmodified	_NMVLEILDVSG_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3102888541	2	595.310289	1188.60602	0.81263	0.00048377	-9.9816	-0.0059421	-9.1689	-0.0054584	595.3051387133723	27.204	0.16893	27.194	27.049	27.218	-0.010126	1167	55	0.91857195	0.03305024	0.9170525	372.18903	0	13.391388						206	8	3	NaN	NaN	NaN	0.64656	1	15507	15507		10.965	0.60495	1	67107			18454	5509	10575	10910	14661	14661					0.019266003603434
NMVLEILDVSG	11	Unmodified						0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.310289	1188.60602	1.2539	0.00074646	-10.364	-0.0061698	-9.1101	-0.0054233	595.3039039941982	27.157	0.16891	27.157	27.157	27.326	0	1170	64	0.91673553	0.038552344	0.91673553	371.44495		15.620728	-0.018694	-0.00016965	-0.00015849	NaN	10.965	236	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107820			18455	5509	10575	10910							0.019266003603434
NMWRETFAELL	11	Unmodified	_NMWRETFAELL_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3477369929002	2	705.347737	1408.68092	0.57732	0.00040721	2.6581	0.0018749	3.2355	0.0022821	705.3501116605787	31.766	0.12068	31.766	31.742	31.863	0	1077	43	0.9735726	0.025625527	0.9735726	393.7663	0	10.364349						136	6	4	NaN	NaN	NaN	0.6011	1	20133	20133		13.949	1.3791	1	16399	+		18456	9022	10576	10911	14662	14662					-0.007072171083791545
NMWRETFAELL	11	Unmodified						0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	705.347737	1408.68092	0.57732	0.00040721	2.6581	0.0018749	3.2355	0.0022821	705.3501116605787	31.766	0.12068	31.766	31.742	31.863	0	1077	43	0.9735726	0.025625527	0.9735726	393.7663		10.364349	0.0027513	-0.00076685	-0.00015543	NaN	13.949	136	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16399	+		18457	9022	10576	10911							-0.007072171083791545
NNCIIAYSK	9	Unmodified	_NNCIIAYSK_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.5084422395998	1	1025.50844	1024.50117	1.266	0.0012983	-5.9285	-0.0060798	-4.6626	-0.0047815	1025.5029793263855	29.304	0.14478	29.296	29.272	29.417	-0.0077229	171	82	1.5174994	0.047863245	1.51598	308.00027	0	9.7146						260	7	2	NaN	NaN	NaN	0.44082	1	9366	9366		12.049	0	1	37584	+		18458	9572	10577	10912	14663	14663					-0.010104763255640137
NNCIIAYSK	9	Unmodified						0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1025.50844	1024.50117	1.266	0.0012983	-5.9285	-0.0060798	-4.6626	-0.0047815	1025.5029793263855	29.304	0.14478	29.296	29.272	29.417	-0.0077229	171	82	1.5174994	0.047863245	1.51598	308.00027		9.7146	-0.0042443	-0.00015626	0.00012645	NaN	12.049	260	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37584	+		18459	9572	10577	10912							-0.010104763255640137
NNEPFSTEAN	10	Unmodified	_NNEPFSTEAN_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7385422967501	2	561.738542	1121.46253	1.743	0.00097913	3.4076	0.0019142	5.1506	0.0028933	561.7410376153431	15.726	0.19205	15.726	15.63	15.822	0	1260	43	0.8615505	0.025797546	0.8615505	349.32462	0	10.4599						166	9	3	NaN	NaN	NaN	0.76025	1	13728	13728		3.9281	0.35833	1	14494	+		18460	9628	10578	10913	14664	14664					-0.09334110426357256
NNHIQGYSINL	11	Unmodified	_NNHIQGYSINL_					0	0	0			REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	REV__tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8202009739501	2	636.820201	1271.62585	1.8892	0.0012031	-11.4	-0.0072599	-9.511	-0.0060568	636.8138186100944	24.212	0.096529	24.199	24.175	24.272	-0.012749	1116	31	0.94976085	0.018331587	0.9482414	384.53778	0	7.422058						64	5	2	NaN	NaN	NaN	0.72342	1	17450	17450		5.9198	1.6096	1	6614.3	+		18461	13474	10579	10914	14665	14665					0.0009011241534153669
NNKLAEINL	9	Unmodified	_NNKLAEINL_					0	0	0			REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.790380902	2	514.790381	1027.56621	1.3103	0.00067455	-1.3623	-0.00070127	-0.05192	-2.6728E-05	514.7898377198185	22.741	0.2893	22.728	22.68	22.969	-0.01354	1272	76	0.854179	0.04610449	0.8526596	346.71976	0	18.714264						421	13	4	NaN	NaN	NaN	0.10363	1	9496	9496		35.296	0	1	71226	+		18462	13403	10580	10915	14666	14666					0.05352841471949432
NNKLAEINL	9	Unmodified						0	0	0			REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.790381	1027.56621	2.2728	0.00117	-2.08	-0.0010708	0.19276	9.9233E-05	514.7889800178673	22.694	0.21707	22.694	22.621	22.838	0	1269	85	0.8560222	0.051634252	0.8560222	347.46793		20.958862	-0.017049	-0.00034709	0.0016813	NaN	35.296	406	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70956	+		18463	13403	10580	10915							0.05352841471949432
NNKLAEINL	9	Unmodified						0	0	0			REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	REV__tr|U7SJH1|U7SJH1_FUSNUD-serinedehydratase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02042PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.790381	1027.56621	1.3103	0.00067455	-1.3623	-0.00070127	-0.05192	-2.6728E-05	514.7898377198185	22.741	0.2893	22.728	22.68	22.969	-0.01354	1272	76	0.854179	0.04610449	0.8526596	346.71976		18.714264	0.017049	0.00039192	-0.0016813	NaN	35.296	421	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71226	+		18464	13403	10580	10915							0.05352841471949432
NNMFGVYRCD	10	Unmodified	_NNMFGVYRCD_					0	0	0		tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	tr|U7T606|U7T606_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00043PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.8391974063	3	406.839197	1217.49576	0.85831	0.00034919	7.9367	0.003229	8.795	0.0035782	406.8429425124787	32.056	0.14477	32.056	32.008	32.152	0	1452	49	0.74322224	0.029688	0.74322224	451.58334	0	18.038513						196	7	5	NaN	NaN	NaN	0.72631	1	16916	16916		2.9701	1.1199	1	23636			18465	13994	10581	10916	14667	14667					-0.10428523179666627
NNNVNLSQAQM	11	Unmodified	_NNNVNLSQAQM_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7880435658	2	616.788044	1231.56153	2.2089	0.0013624	3.732	0.0023018	5.9409	0.0036643	616.7894160460826	25.829	0.41027	25.829	25.781	26.191	0	1140	127	0.93509084	0.07712567	0.93509084	378.73044	0	31.237457						1013	18	4	NaN	NaN	NaN	0.081525	1	17304	17304		41.839	0.054019	1	971550			18466	5136	10582	10917	14668	14668					-0.0449841073314019
NNNVNLSQAQM	11	Unmodified						0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.788044	1231.56153	2.426	0.0014963	3.9398	0.00243	6.3658	0.0039264	616.7897201109369	25.853	0.38618	25.841	25.793	26.179	-0.0116	1140	133	0.93509084	0.08080709	0.9335714	378.73044		32.728485	0.0061381	0.00012421	-0.00075972	NaN	41.839	894	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988940			18467	5136	10582	10917							-0.0449841073314019
NNPTESDT	8	Unmodified	_NNPTESDT_					0	0	0		ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.1803289261	2	439.180329	876.346105	1.2319	0.00054103	6.8534	0.0030099	8.0853	0.0035509	439.1837810357379	32.417	0.07238	32.414	32.414	32.486	-0.0031052	1407	34	0.77102906	0.02037406	0.7695096	313.68112	0	8.288849						52	4	2	NaN	NaN	NaN	0.83211	1	5615	5615		4.9097	0.49665	1	3603.8			18468	5906	10583	10918	14669	14669					-0.09701428926268818
NNPWVCDCH	9	Unmodified	_NNPWVCDCH_					0	0	0		ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2078435428001	2	544.207844	1086.40113	1.9039	0.0010361	3.7531	0.0020425	5.657	0.0030786	545.2099276443709	25.926	0.16892	25.926	25.877	26.046	0	1308	85	0.83204526	0.051673353	0.83204526	337.49356	0	20.959717						350	8	5	NaN	NaN	NaN	0.62619	1	12221	12221		4.4131	0	1	21920			18469	3556	10584	10919	14670	14670					-0.1386103693100722
NNSKAHQFG	9	Unmodified	_NNSKAHQFG_					0	0	0		ENST00000258349.8_1_1:173961995-173962157:-|nuORF	ENST00000258349.8_1_1:173961995-173962157:-|nuORF	ENST00000258349.8_1_1:173961995-173962157:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.74122237145	2	501.741222	1001.46789	1.3433	0.000674	-6.5625	-0.0032927	-5.2192	-0.0026187	501.73718995073057	19.418	0.14427	19.404	19.356	19.5	-0.014141	1332	52	0.8172735	0.031408787	0.81575406	331.8537	0	12.75354						141	7	3	NaN	NaN	NaN	0.62619	1	8471	8471		4.4131	0.44458	1	17669			18470	6292	10585	10920	14671	14671					-0.03278342053238248
NNVDKVIC	8	Unmodified	_NNVDKVIC_					0	0	0		tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4556783876001	1	904.455678	903.448402	1.6779	0.0015175	-3.1843	-0.0028801	-1.5065	-0.0013625	904.4524145856165	27.349	0.096569	27.339	27.315	27.411	-0.010126	354	79	1.4090419	0.046368003	1.4075224	286.49554	0	9.427826						116	5	2	NaN	NaN	NaN	0.84562	1	6015	6015		2.1763	0	1	9363.2			18471	13950	10586	10921	14672	14672					-0.007184343883636757
NNYQTQWF	8	Unmodified	_NNYQTQWF_					0	0	0			REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7434307094001	2	550.743431	1099.47231	1.1071	0.00060974	1.8244	0.0010048	2.9315	0.0016145	550.7445840620229	14.789	0.12012	14.789	14.765	14.885	0	1269	40	0.8560222	0.023961365	0.8560222	347.16736	0	9.717743						98	6	2	NaN	NaN	NaN	0.7718	1	12813	12813		13.003	1.4544	1	8649	+		18472	9016	10587	10922	14673	14673					-0.07344877630339397
NNYQTQWF	8	Unmodified						0	0	0			REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.743431	1099.47231	1.1071	0.00060974	1.8244	0.0010048	2.9315	0.0016145	550.7445840620229	14.789	0.12012	14.789	14.765	14.885	0	1269	40	0.8560222	0.023961365	0.8560222	347.16736		9.717743	0.0066428	0.00047796	0.0016813	NaN	13.003	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8649	+		18473	9016	10587	10922							-0.07344877630339397
NNYQTQWF	8	Unmodified						0	0	0			REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.743431	1099.47231	1.5368	0.00084638	0.34	0.00018725	1.8768	0.0010336	550.7433928018911	14.788	0.048054	14.776	14.752	14.8	-0.011738	1272	37	0.854179	0.022119343	0.8526596	346.41986		8.970703	-0.0066428	-0.0011571	-0.0016813	NaN	13.003	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4667.3	+		18474	9016	10587	10922							-0.07344877630339397
NPAAAASAA	9	Unmodified	_NPAAAASAA_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3682435887999	1	743.368244	742.360967	0.59747	0.00044414	-8.3343	-0.0061955	-7.7369	-0.0057513	743.3616826249637	38.996	0.12013	38.996	38.924	39.044	0	603	58	1.2603331	0.034198165	1.2603331	257.09192	0	6.975998						113	6	2	NaN	NaN	NaN	0.66196	1	3946	3946		2.4615	1.0219	1	7846.7	+		18475	8721	10588	10923	14674	14674					-0.020518922676274087
NPAKPGLG	8	Unmodified	_NPAKPGLG_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.4253645372003	1	753.425365	752.418088	0.96596	0.00072778	-10.669	-0.0080382	-9.7029	-0.0073104	753.4173301258359	31.139	0.16889	31.139	31.091	31.259	0	498	136	1.3232021	0.08078849	1.3232021	269.85098	0	16.47583						402	8	2	NaN	NaN	NaN	0.80692	1	4104	4104		8.2903	2.2	1	67435			18476	5047	10589	10924	14675	14675					0.03197575008778131
NPAKPGLG	8	Unmodified						0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.425365	752.418088	1.3852	0.0010436	-9.6228	-0.0072501	-8.2376	-0.0062064	753.4178390236314	31.114	0.19307	31.109	31.06	31.253	-0.0050716	498	124	1.3232021	0.07358372	1.3216827	269.85098		15.006531	-0.01511	0.00035812	-0.00075972	NaN	8.2903	429	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69679			18477	5047	10589	10924							0.03197575008778131
NPAQDFSTL	9	Unmodified	_NPAQDFSTL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4683515639002	1	992.468352	991.461075	2.418	0.0023998	-1.4554	-0.0014444	0.96259	0.00095534	992.4671124163898	23.176	0.12051	23.176	23.152	23.272	0	270	79	1.458913	0.046249866	1.458913	296.24023	0	9.391266						199	6	2	NaN	NaN	NaN	0.04743	1	8255	8255		48.002	15.549	1	20574			18478	2467	10590	10925	14676	14676					-0.034996997244547856
NPAQDFSTL	9	Unmodified	_NPAQDFSTL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4683515639002	1	992.468352	991.461075	1.9315	0.0019169	-0.59969	-0.00059518	1.3318	0.0013217	992.4673563510581	23.199	0.12069	23.186	23.138	23.258	-0.013294	270	73	1.458913	0.042687654	1.4573935	296.24023	0	8.667938						181	6	2	NaN	NaN	NaN	0.010878	1	8088	8088		90.252	54.955	1	19345			18479	2467	10590	10925	14677	14677					-0.034996997244547856
NPAQDFSTL	9	Unmodified						0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.468352	991.461075	2.3729	0.0023551	-6.9466	-0.0068942	-4.5736	-0.0045392	992.4610730473345	23.344	0.048262	23.331	23.331	23.379	-0.013294	252	55	1.4695803	0.031995296	1.4680609	298.40634		6.496826	0.077485	-0.0031439	0.004574	NaN	48.002	77	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5727.1			18480	2467	10590	10925							-0.034996997244547856
NPAVSVSV	8	Unmodified	_NPAVSVSV_					0	0	0			REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.4199448083002	1	772.419945	771.412668	1.4355	0.0011088	4.9339	0.0038111	6.3695	0.0049199	772.4240957309755	28.894	0.072439	28.885	28.861	28.933	-0.0083485	540	88	1.2980826	0.05211377	1.2965631	264.6114	0	10.6232605						120	4	2	NaN	NaN	NaN	0.84727	1	4298	4298		1.2418	0	1	9906.7	+		18481	8510	10591	10926	14678	14678					0.01781851426301273
NPDEAEKAL	9	Unmodified	_NPDEAEKAL_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.7430963584	2	493.743096	985.47164	1.4955	0.00073837	-3.1569	-0.0015587	-1.6614	-0.00082031	493.7408182399162	14.525	0.11989	14.525	14.453	14.573	0	1353	73	0.8043377	0.044348955	0.8043377	326.67294	0	18.011871						242	6	4	NaN	NaN	NaN	0.14227	1	8055	8055		29.706	14.244	1	45657			18482	7644	10592	10927	14679	14679					-0.021677170700399984
NPDEAEKAL	9	Unmodified	_NPDEAEKAL_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;RNPS1|p.E211D|1|0.25|ENSG00000205937|chr16:2262321-2262321|C/G|missense_variant;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.7430963584	2	493.743096	985.47164	0.80586	0.00039789	-2.9681	-0.0014655	-2.1623	-0.0010676	493.74125130671	14.524	0.16773	14.513	14.441	14.609	-0.011218	1353	70	0.8043377	0.042503357	0.80281824	326.67294	0	17.262299						286	8	4	NaN	NaN	NaN	0.19455	1	7883	7883		25.681	1.2811	1	51013			18483	7644	10592	10927	14680	14680					-0.021677170700399984
NPDEFYYKM	9	Unmodified	_NPDEFYYKM_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.7604318318	2	603.760432	1205.50631	1.4415	0.00087032	-0.75286	-0.00045455	0.68864	0.00041577	603.760076652028	21.513	0.19285	21.513	21.44	21.633	0	1194	76	0.902037	0.045965135	0.902037	365.4305	0	18.621246						216	9	2	NaN	NaN	NaN	0.030545	1	16620	16620		58.398	40.164	1	56805			18484	5311	10593	10928	14681	14681					-0.08822217253600684
NPDEFYYKM	9	Unmodified	_NPDEFYYKM_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.7604318318	2	603.760432	1205.50631	1.1952	0.00072164	-0.50577	-0.00030537	0.68946	0.00041627	603.7605999383351	21.513	0.19276	21.499	21.426	21.619	-0.014006	1191	85	0.90387505	0.051472604	0.9023556	366.1751	0	20.852417						378	9	5	NaN	NaN	NaN	0.015447	1	15958	15958		77.761	58.169	1	65505			18485	5311	10593	10928	14682	14682					-0.08822217253600684
NPDEFYYKM	9	Oxidation (M)	_NPDEFYYKM(Oxidation (M))_		NPDEFYYKM(1)		NPDEFYYKM(51)	0	0	1		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.75788914285	2	611.757889	1221.50123	1.6556	0.0010128	-0.65336	-0.0003997	1.0022	0.00061311	611.7576965925116	17.933	0.16793	17.933	17.885	18.053	0	1212	67	0.8910048	0.04046464	0.8910048	360.90768	0	16.390472						383	8	4	NaN	NaN	NaN	0.040769	1	17010	17010		50.831	36.789	1	62430			18486	5311	10593	10929	14683	14683		553			-0.10066521116232252
NPDELAEAL	9	Unmodified	_NPDELAEAL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.4680172129	1	971.468017	970.460741	1.4306	0.0013898	-1.3866	-0.001347	0.04407	4.2813E-05	971.466589430759	24.647	0.072285	24.634	24.61	24.682	-0.012394	291	82	1.446459	0.04803121	1.4449396	293.79855	0	9.75589						95	4	2	NaN	NaN	NaN	0.032689	1	7467	7467		55.592	25.993	1	7906.2			18487	2362	10594	10930	14684	14684					-0.025671194443361856
NPDESSKPNM	10	Unmodified	_NPDESSKPNM_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7427703949	2	559.74277	1117.47099	1.2245	0.00068539	-1.2944	-0.00072453	-0.06993	-3.9143E-05	559.7416073376196	12.462	0.12009	12.453	12.405	12.525	-0.0088415	1290	40	0.84311575	0.023976922	0.8415963	341.86487	0	9.722107						96	6	2	NaN	NaN	NaN	0.042793	1	13162	13162		54.277	37.079	1	9722.9			18488	4793	10595	10931	14685	14685					-0.08304879781394447
NPDEVHAIL	9	Unmodified	_NPDEVHAIL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.26145628705007	2	504.261456	1006.50836	1.5409	0.00077701	3.4125	0.0017208	4.9534	0.0024978	504.2633451960648	20.501	0.14434	20.501	20.501	20.646	0	1311	67	0.83019954	0.04060483	0.83019954	337.0794	0	16.48645						272	7	4	NaN	NaN	NaN	0.16939	1	8840	8840		27.296	1.1813	1	87033			18489	1329	10596	10932	14686	14686					0.00536579546530902
NPDFIEQVAEF	11	Unmodified	_NPDFIEQVAEF_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.8089675856501	2	654.808968	1307.60338	0.73939	0.00048416	-1.3618	-0.00089174	-0.62244	-0.00040758	654.8078616454054	31.718	0.21719	31.718	31.67	31.887	0	1137	76	0.9369253	0.045846224	0.9369253	379.22873	0	18.55664						370	10	4	NaN	NaN	NaN	0.021226	1	18888	18888		61.575	37.175	1	47454			18490	4157	10597	10933	14687	14687					-0.03811531772953458
NPDFIEQVAEF	11	Unmodified	_NPDFIEQVAEF_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8089675856501	2	654.808968	1307.60338	0.18011	0.00011794	-1.7001	-0.0011133	-1.52	-0.00099532	654.8074031420454	31.717	0.12071	31.712	31.664	31.785	-0.0044155	1134	82	0.9387595	0.04950857	0.93724006	379.97116	0	20.039032						293	6	5	NaN	NaN	NaN	0.012576	1	18059	18059		66.786	35.588	1	47330			18491	4157	10597	10933	14688	14688					-0.03811531772953458
NPDILLRG	8	Unmodified	_NPDILLRG_					0	0	0			REV__ENST00000495826.5_1_22:20073486-20074227:+|nuORF	REV__ENST00000495826.5_1_22:20073486-20074227:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.2612593218001	2	449.261259	896.507966	0.96993	0.00043575	-2.0425	-0.00091763	-1.0726	-0.00048188	449.26038577756	27.639	0.14477	27.639	27.591	27.736	0	1353	37	0.8043377	0.022184074	0.8043377	327.11874	0	9.022125						101	7	2	NaN	NaN	NaN	0.78967	1	6012	6012		10.605	1.4818	1	13632	+		18492	9444	10598	10934	14689	14689					0.05557204617343814
NPDNSFEIL	9	Unmodified	_NPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4945663144001	1	1048.49457	1047.48729	2.328	0.0024409	0.1043	0.00010936	2.4324	0.0025503	1048.4945973305776	28.074	0.19306	28.074	28.026	28.219	0	189	100	1.5068626	0.058536887	1.5068626	305.7522	0	11.877502						263	9	2	NaN	NaN	NaN	0.010878	1	10515	10515		90.252	37.493	1	58937			18493	2524	10599	10935	14690	14690					-0.034554305529809426
NPDNSFEIL	9	Unmodified	_NPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7509213905001	2	524.750921	1047.48729	1.5301	0.00080292	0.94869	0.00049783	2.4788	0.0013008	524.7510462772817	28.05	0.1448	28.05	28.026	28.17	0	1281	64	0.84864825	0.038723588	0.84864825	344.38815	0	15.714325						126	7	2	NaN	NaN	NaN	0.032826	1	10516	10516		55.413	41.676	1	19831			18494	2524	10599	10935	14691	14691					-0.034554305529809426
NPDNSFEIL	9	Unmodified	_NPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7509213905001	2	524.750921	1047.48729	0.96767	0.00050779	-0.69375	-0.00036404	0.27393	0.00014374	524.7501793295729	28.073	0.14478	28.064	28.016	28.161	-0.0089779	1281	49	0.84864825	0.029498875	0.8471288	344.38815	0	11.970886						133	7	2	NaN	NaN	NaN	0.2345	1	10305	10305		23.118	6.5334	1	21629			18495	2524	10599	10935	14692	14692					-0.034554305529809426
NPDNSFEIL	9	Unmodified	_NPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.4945663144001	1	1048.49457	1047.48729	1.336	0.0014008	0.75503	0.00079165	2.0911	0.0021925	1048.4943143420007	28.073	0.21724	28.064	28.016	28.233	-0.0089779	189	88	1.5068626	0.0514251	1.5053432	305.75217	0	10.434479						310	10	3	NaN	NaN	NaN	0.010878	1	10306	10306		90.252	40.29	1	57830			18496	2524	10599	10935	14693	14693					-0.034554305529809426
NPDPADLVL	9	Unmodified	_NPDPADLVL_					0	0	0		nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF	nc|ENSG00000167074|Q10587-2|TEF	nc|ENSG00000167074|Q10587-2|TEF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.4938380329	1	953.493838	952.486562	1.6436	0.0015671	-3.4161	-0.0032572	-1.7725	-0.00169	953.4894846407216	27.857	0.12065	27.857	27.808	27.929	0	288	70	1.4482387	0.040937185	1.4482387	294.23773	0	8.3172						166	6	2	NaN	NaN	NaN	0.03533	1	7150	7150		53.14	13.682	1	19872			18497	4521	10600	10936	14694	14694					0.008417747979478918
NPDPADLVL	9	Unmodified	_NPDPADLVL_					0	0	0		nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF	nc|ENSG00000167074|Q10587-2|TEF	nc|ENSG00000167074|Q10587-2|TEF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4938380329	1	953.493838	952.486562	1.1903	0.001135	-2.5177	-0.0024006	-1.3273	-0.0012656	953.4915321310311	27.856	0.096586	27.846	27.822	27.919	-0.009552	288	91	1.4482387	0.053416252	1.4467193	294.23773	0	10.852539						166	5	3	NaN	NaN	NaN	0.032689	1	7009	7009		55.592	8.4558	1	18926			18498	4521	10600	10936	14695	14695					0.008417747979478918
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7560067684	2	508.756007	1015.49746	2.0985	0.0010676	-2.0772	-0.0010568	0.02134	1.0857E-05	508.75512052794903	23.634	0.21689	23.634	23.562	23.778	0	1314	97	0.8283535	0.05908078	0.8283535	336.28976	0	23.98523						447	10	3	NaN	NaN	NaN	0.041983	1	9191	9191		50.315	22.526	1	87230			18499	8059	10601	10937	14696	14696					-0.00966822827751912
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5047370702001	1	1016.50474	1015.49746	2.4803	0.0025213	-0.82414	-0.00083775	1.6562	0.0016835	1016.5043852554061	23.634	0.16868	23.634	23.586	23.754	0	246	70	1.4731345	0.04087639	1.4731345	299.0309	0	8.297455						320	8	4	NaN	NaN	NaN	0.0068607	1	9192	9192		98.792	67.231	1	51376			18500	8059	10601	10937	14697	14697					-0.00966822827751912
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7560067684	2	508.756007	1015.49746	1.693	0.00086132	-2.4953	-0.0012695	-0.80226	-0.00040816	508.7547243889813	23.658	0.24101	23.645	23.5	23.741	-0.013048	1314	103	0.8283535	0.06276655	0.8268341	336.28976	0	25.481567						517	11	4	NaN	NaN	NaN	0.013696	1	9013	9013		81.699	46.403	1	94628			18501	8059	10601	10937	14698	14698					-0.00966822827751912
NPDPAVYQL	9	Unmodified	_NPDPAVYQL_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5047370702001	1	1016.50474	1015.49746	2.1809	0.0022169	0.0028457	2.8926E-06	2.1837	0.0022198	1016.5053110848307	23.658	0.21692	23.645	23.596	23.813	-0.013048	246	76	1.4731345	0.044430852	1.4716152	299.0309	0	9.019012						333	10	3	NaN	NaN	NaN	5.8423E-12	1	9016	9016		148.45	79.088	1	53006			18502	8059	10601	10937	14699	14699					-0.00966822827751912
NPDPDAETL	9	Unmodified	_NPDPDAETL_					0	0	0		nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000264230|ENST00000619162|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8;ENSG00000265190|ENST00000585281|ANXA8	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.4316317066001	1	971.431632	970.424355	2.7372	0.002659	-0.70712	-0.00068692	2.0301	0.0019721	971.4309212346712	18.652	0.3599	18.652	18.58	18.94	0	330	94	1.4233059	0.055258393	1.4233059	289.09592	0	11.223877						698	16	4	NaN	NaN	NaN	0.00065562	1	7606	7606		115.07	62.446	1	170380			18503	6153	10602	10938	14700	14700					-0.06203996341025686
NPDPDAETL	9	Unmodified	_NPDPDAETL_					0	0	0		nc|ENSG00000264230|Q5VT79-2|ANXA8L1;ENSG00000264230|ENST00000619162|ANXA8L1;nc|ENSG00000276850|P13928-2|ANXA8;ENSG00000265190|ENST00000585281|ANXA8	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.4316317066001	1	971.431632	970.424355	2.1154	0.002055	-0.95466	-0.00092738	1.1607	0.0011276	971.4306296012496	18.65	0.28803	18.636	18.588	18.876	-0.014061	327	118	1.425088	0.06954825	1.4235686	289.45792	0	14.126373						691	13	4	NaN	NaN	NaN	5.4096E-19	1	7464	7464		165.93	113.31	1	174990			18504	6153	10602	10938	14701	14701					-0.06203996341025686
NPDPFVPVL	9	Unmodified	_NPDPFVPVL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2712926918501	2	499.271293	996.528032	1.0039	0.00050123	-0.75396	-0.00037643	0.24996	0.0001248	499.27148855372434	31.597	0.072403	31.597	31.573	31.646	0	1326	28	0.8209676	0.016622722	0.8209676	333.3761	0	6.750122						55	4	2	NaN	NaN	NaN	0.21199	1	8446	8446		24.562	12.513	1	4486.6			18505	2208	10603	10939	14702	14702					0.029629555573023936
NPDPFVPVL	9	Unmodified	_NPDPFVPVL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5353089171002	1	997.535309	996.528032	1.1955	0.0011926	-0.6726	-0.00067094	0.52293	0.00052164	997.5348885602717	31.597	0.024145	31.597	31.573	31.597	0	219	88	1.4891195	0.051490545	1.4891195	302.35275	0	10.454712						91	2	2	NaN	NaN	NaN	0.35794	1	8448	8448		15.463	5.7167	1	8029.2			18506	2208	10603	10939	14703	14703					0.029629555573023936
NPDPFVPVL	9	Unmodified	_NPDPFVPVL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5353089171002	1	997.535309	996.528032	0.88079	0.00087862	-1.065	-0.0010624	-0.18425	-0.0001838	997.5343526007788	31.596	0.072411	31.592	31.544	31.616	-0.0044174	213	85	1.4926696	0.049707174	1.4911501	303.07358	0	10.092621						179	4	3	NaN	NaN	NaN	0.33629	1	8277	8277		16.584	8.2939	1	13319			18507	2208	10603	10939	14704	14704					0.029629555573023936
NPDREGWLL	9	Unmodified	_NPDREGWLL_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000008256|ENST00000350796|CYTH3;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2801803564502	2	550.28018	1098.54581	1.2797	0.00070421	-5.5576	-0.0030583	-4.2779	-0.002354	550.2801485310574	24.43	0.21716	24.43	24.309	24.526	0	1251	97	0.8670771	0.058934033	0.8670771	351.65448	0	23.901459						509	10	4	NaN	NaN	NaN	0.071077	1	12783	12783		40.006	16.888	1	166360			18508	1690	10604	10940	14705	14705					0.0004767081215959479
NPDREGWLL	9	Unmodified	_NPDREGWLL_					0	0	0		nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000462927.5_1_22:37699411-37707619:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000008256|ENST00000350796|CYTH3;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3	nc|ENSG00000108669|Q15438-3|CYTH1	nc|ENSG00000108669|Q15438-3|CYTH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2801803564502	2	550.28018	1098.54581	1.529	0.00084139	-3.3692	-0.001854	-1.8402	-0.0010126	550.280425715676	24.429	0.14487	24.417	24.368	24.513	-0.012749	1251	88	0.8670771	0.05341184	0.8655577	351.65448	0	21.661865						420	7	4	NaN	NaN	NaN	0.090258	1	12450	12450		37.231	11.116	1	150480			18509	1690	10604	10940	14706	14706					0.0004767081215959479
NPDSSEPVV	9	Unmodified	_NPDSSEPVV_					0	0	0		nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4367170845002	1	943.436717	942.429441	2.0143	0.0019003	0.047102	4.4438E-05	2.0614	0.0019448	943.4369542814568	17.45	0.16803	17.436	17.388	17.556	-0.013569	381	46	1.3929803	0.026783466	1.3914609	283.05396	0	5.4424133						140	8	2	NaN	NaN	NaN	0.032689	1	6728	6728		55.592	22.166	1	12452			18510	5773	10605	10941	14707	14707					-0.04407692478412173
NPDWGTFEEV	10	Unmodified	_NPDWGTFEEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1193.5109446600998	1	1193.51094	1192.50367	2.4045	0.0028698	0.10617	0.00012672	2.5107	0.0029965	1193.5105919603027	27.35	0.1207	27.35	27.302	27.422	0	63	67	1.5811787	0.038849115	1.5811787	320.3238	0	7.87027						155	6	3	NaN	NaN	NaN	0.0002722	1	16210	16210		98.792	71.496	1	15872			18511	4794	10606	10942	14708	14708					-0.0848834938692562
NPDWGTFEEV	10	Unmodified	_NPDWGTFEEV_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1193.5109446600998	1	1193.51094	1192.50367	1.6209	0.0019345	1.183	0.0014119	2.8038	0.0033464	1193.51340967471	27.349	0.1207	27.339	27.291	27.411	-0.010126	60	61	1.582944	0.03530991	1.5814246	320.68143	0	7.15329						194	6	3	NaN	NaN	NaN	0.0028528	1	15596	15596		83.13	57.329	1	16550			18512	4794	10606	10942	14709	14709					-0.0848834938692562
NPDYSEEIL	9	Unmodified	_NPDYSEEIL_					0	0	0		ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENSG00000108651|ENST00000261708|UTP6	ENST00000490218.6_1_17:30212004-30222015:-|nuORF	ENST00000490218.6_1_17:30212004-30222015:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.4891465855	1	1079.48915	1078.48187	1.0348	0.001117	1.8147	0.001959	2.8495	0.003076	1079.490470076846	24.43	0.12062	24.43	24.381	24.502	0	123	52	1.5458313	0.03007543	1.5458313	313.542	0	6.1002197						152	6	3	NaN	NaN	NaN	0.0028258	1	11901	11901		108.53	66.214	1	12431			18513	1687	10607	10943	14710	14710					-0.05423154135451114
NPDYSEEIL	9	Unmodified	_NPDYSEEIL_					0	0	0		ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENSG00000108651|ENST00000261708|UTP6	ENST00000490218.6_1_17:30212004-30222015:-|nuORF	ENST00000490218.6_1_17:30212004-30222015:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.4891465855	1	1079.48915	1078.48187	1.8207	0.0019655	0.029791	3.2159E-05	1.8505	0.0019976	1079.489182467761	24.429	0.12065	24.417	24.368	24.489	-0.012749	123	49	1.5458313	0.028307796	1.5443119	313.542	0	5.741699						149	6	3	NaN	NaN	NaN	0.011693	1	11593	11593		87.778	47.624	1	11752			18514	1687	10607	10943	14711	14711					-0.05423154135451114
NPECKYSEF	9	Unmodified	_NPECKYSEF_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7369567355	2	558.736957	1115.45936	0.97502	0.00054478	3.0335	0.0016949	4.0085	0.0022397	558.7385500688736	35.143	0.14482	35.143	35.094	35.239	-4.5776E-05	1269	61	0.8560222	0.036849678	0.85450274	347.10577	0	14.942047						159	7	2	NaN	NaN	NaN	0.35794	1	13093	13093		15.463	3.414	1	19671			18515	13936	10608	10944	14712	14712					-0.09375076804735727
NPEGALLGAGF	11	Unmodified	_NPEGALLGAGF_					0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5312861717	1	1045.53129	1044.52401	1.9193	0.0020067	5.3806	0.0056255	7.2999	0.0076323	1045.5370758067725	34.614	0.16884	34.614	34.565	34.734	0	102	73	1.5582114	0.04243028	1.5582114	316.18283	0	8.60968						237	8	3	NaN	NaN	NaN	0.26033	1	10401	10401		27.046	7.7617	1	29965			18516	3977	10609	10945	14713	14713					0.0035286606357658457
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.21873419260004	2	478.218734	954.422915	1.9809	0.00094732	-1.7329	-0.0008287	0.24804	0.00011862	478.2177351121943	14.045	0.24014	14.045	13.973	14.213	0	1356	76	0.8024889	0.046239376	0.8024889	326.068	0	18.788025						387	11	3	NaN	NaN	NaN	0.048656	1	7185	7185		47.482	20.75	1	72105			18517	1374	10610	10946	14714	14714					-0.05611908910782404
NPEHASVAM	9	Unmodified	_NPEHASVAM_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.21873419260004	2	478.218734	954.422915	1.4161	0.00067721	-0.91449	-0.00043733	0.50162	0.00023988	478.218104329892	14.045	0.26366	14.034	13.962	14.226	-0.010672	1356	79	0.8024889	0.048086345	0.8009695	326.06796	0	19.538483						338	12	2	NaN	NaN	NaN	0.030696	1	7039	7039		58.2	32.085	1	74412			18518	1374	10610	10946	14715	14715					-0.05611908910782404
NPEHASVAM	9	Oxidation (M)	_NPEHASVAM(Oxidation (M))_		NPEHASVAM(1)		NPEHASVAM(88)	0	0	1		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.21619150365007	2	486.216192	970.41783	1.6169	0.00078618	-1.7539	-0.00085277	-0.13695	-6.659E-05	486.21553278445236	11.718	0.40811	11.71	11.59	11.998	-0.0081854	1344	94	0.8098828	0.057336926	0.8083634	328.99524	0	23.291718						724	18	3	NaN	NaN	NaN	0.011693	1	7463	7463		87.778	58.18	1	120770			18519	1374	10610	10947	14716	14716		156			-0.06856212773391235
NPESCSVSL	9	Unmodified	_NPESCSVSL_					0	0	0		ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.4138731524	1	935.413873	934.406597	2.3912	0.0022368	-1.7038	-0.0015937	0.68744	0.00064305	935.4122324244404	21.103	0.072184	21.089	21.065	21.138	-0.014004	345	37	1.4143922	0.021398306	1.4128729	287.44043	0	4.348694						44	4	2	NaN	NaN	NaN	0.028569	1	6567	6567		60.984	41.865	1	2524.2			18520	3930	10611	10948	14717	14717					-0.06323034867546085
NPETVAALL	9	Unmodified	_NPETVAALL_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.514573475	1	927.514573	926.507297	1.8875	0.0017507	5.7007	0.0052875	7.5883	0.0070382	927.5196479483025	27.615	0.048264	27.615	27.615	27.664	0	297	52	1.4428991	0.030264378	1.4428991	293.27	0	6.151245						55	3	2	NaN	NaN	NaN	0.27608	1	6525	6525		20.449	0	1	4043.1			18521	3987	10612	10949	14718	14718					0.04110365177609765
NPETVAALL	9	Unmodified						0	0	0		nc|ENSG00000158402|P30307-4|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	927.514573	926.507297	1.2296	0.0011404	6.5723	0.0060959	7.8018	0.0072363	927.519970022444	27.639	0.048258	27.629	27.605	27.653	-0.009552	300	34	1.4411188	0.019582868	1.4395994	292.90817		3.9802246	0.0068869	0.00040399	-0.0016498	NaN	20.449	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3989.2			18522	3987	10612	10949							0.04110365177609765
NPFKEMFT	8	Unmodified	_NPFKEMFT_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.4760794787002	1	1013.47608	1012.4688	1.7221	0.0017453	-0.88756	-0.00089952	0.83449	0.00084574	1013.4750097106245	28.652	0.12064	28.644	28.596	28.716	-0.0083485	237	46	1.4784646	0.02664435	1.4769452	300.12488	0	5.4087524						85	6	2	NaN	NaN	NaN	0.81756	1	8897	8897		6.8632	0.613	1	6288.4			18523	933	10613	10950	14719	14719					-0.03693263728541751
NPFKEMFT	8	Unmodified						0	0	0		ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1013.47608	1012.4688	1.9406	0.0019668	-2.7801	-0.0028175	-0.83943	-0.00085075	1013.4741349080997	28.629	0.072363	28.629	28.605	28.677	0	240	43	1.4766881	0.0248667	1.4766881	299.76428		5.047882	-0.0075072	-0.0010396	-0.00012852	NaN	6.8632	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5309.8			18524	933	10613	10950							-0.03693263728541751
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7794818647	2	571.779482	1141.54441	1.8723	0.0010705	-1.3867	-0.0007929	0.48553	0.00027762	571.7779617453004	34.565	0.24121	34.565	34.517	34.758	0	1227	64	0.88180584	0.038639963	0.88180584	357.46097	0	15.663605						326	11	4	NaN	NaN	NaN	0.074859	1	14514	14514		39.459	16.124	1	68125			18525	1841	10614	10951	14720	14720					-0.02069963276630915
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5516872627998	1	1142.55169	1141.54441	2.6694	0.0030499	-0.97284	-0.0011115	1.6965	0.0019384	1142.5502807254552	34.565	0.16894	34.565	34.517	34.686	0	60	91	1.582944	0.052998543	1.582944	320.8454	0	10.742249						297	8	3	NaN	NaN	NaN	0.017558	1	14517	14517		75.089	34.935	1	32521			18526	1841	10614	10951	14721	14721					-0.02069963276630915
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7794818647	2	571.779482	1141.54441	1.023	0.00058496	-1.162	-0.00066438	-0.13891	-7.9429E-05	571.7780663955274	34.564	0.26519	34.563	34.515	34.78	-0.00064468	1224	58	0.883646	0.034959912	0.88212657	358.2069	0	14.1718445						371	12	4	NaN	NaN	NaN	0.023828	1	14039	14039		67.154	34.702	1	69226			18527	1841	10614	10951	14722	14722					-0.02069963276630915
NPFQFEITF	9	Unmodified	_NPFQFEITF_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1142.5516872627998	1	1142.55169	1141.54441	1.6949	0.0019365	-0.85689	-0.00097904	0.83804	0.00095751	1142.5503916173207	34.564	0.19295	34.563	34.515	34.708	-0.00064468	63	94	1.5811787	0.054768085	1.5796592	320.48758	0	11.100922						309	9	3	NaN	NaN	NaN	0.0073225	1	14042	14042		97.85	47.888	1	32874			18528	1841	10614	10951	14723	14723					-0.02069963276630915
NPFTKEAAL	9	Unmodified	_NPFTKEAAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.7663744894499	2	495.766374	989.518196	1.7479	0.00086654	-2.883	-0.0014293	-1.1351	-0.00056274	495.76552700122977	19.132	0.16788	19.132	19.06	19.228	0	1311	40	0.83019954	0.023995101	0.83019954	337.15747	0	9.7447815						181	8	3	NaN	NaN	NaN	0.25424	1	8195	8195		21.85	4.0514	1	21318			18529	4204	10615	10952	14724	14724					0.023017675518872238
NPFTKEAAL	9	Unmodified	_NPFTKEAAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.7663744894499	2	495.766374	989.518196	1.1418	0.00056608	-1.5998	-0.00079312	-0.45795	-0.00022704	495.76539533513744	19.178	0.19229	19.164	19.092	19.284	-0.014141	1311	49	0.83019954	0.029530823	0.8286801	337.15747	0	11.99295						186	9	3	NaN	NaN	NaN	0.19268	1	8029	8029		25.801	6.6374	1	22044			18530	4204	10615	10952	14725	14725					0.023017675518872238
NPFYPEVEL	9	Unmodified	_NPFYPEVEL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1107.5357028475999	1	1107.5357	1106.52843	0.99629	0.0011034	-1.057	-0.0011707	-0.060754	-6.7287E-05	1107.5338573826957	29.69	0.14477	29.683	29.635	29.779	-0.0070648	105	85	1.5564433	0.049491525	1.5549239	315.59332	0	10.035187						250	7	3	NaN	NaN	NaN	0.070055	1	12754	12754		40.154	7.701	1	23185			18531	5645	10616	10953	14726	14726					-0.020576695135332557
NPHLFTSNLQL	11	Unmodified	_NPHLFTSNLQL_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3407692405501	2	642.340769	1282.66699	2.7669	0.0017773	-6.6377	-0.0042637	-3.8709	-0.0024864	642.3374532300766	28.243	0.43438	28.243	28.05	28.484	0	1170	163	0.91673553	0.099044025	0.91673553	371.1322	0	40.097076						1858	19	7	NaN	NaN	NaN	0.031011	1	18473	18473		55.958	12.183	1	1588800	+		18532	10727	10617	10954	14727	14727					0.03695873454807952
NPHYSPSTCL	10	Unmodified	_NPHYSPSTCL_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.5026911300333	3	373.502691	1117.48624	2.0438	0.00076336	-2.8982	-0.0010825	-0.85439	-0.00031912	373.5016903052325	26.07	0.072418	26.07	26.046	26.119	0	1485	34	0.72280174	0.020431578	0.72280174	439.6154	0	12.426697						65	4	2	NaN	NaN	NaN	0.74854	1	13562	13562		2.239	0.86933	1	5195.2			18533	1381	10618	10955	14728	14728					-0.06779968193563946
NPIEEISVL	9	Unmodified	_NPIEEISVL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5513529118001	1	1013.55135	1012.54408	2.2836	0.0023145	0.48841	0.00049503	2.772	0.0028096	1013.5519499083434	29.28	0.28956	29.28	29.184	29.474	0	186	175	1.5086359	0.102975845	1.5086359	306.24927	0	20.90384						1007	13	3	NaN	NaN	NaN	0.0052656	1	9091	9091		102.05	22.848	1	581960			18534	1932	10619	10956	14729	14729					0.03830617003529824
NPIEEISVL	9	Unmodified	_NPIEEISVL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5513529118001	1	1013.55135	1012.54408	2.099	0.0021274	0.56412	0.00057177	2.6631	0.0026992	1013.5524209218851	29.28	0.28959	29.272	29.151	29.441	-0.0077229	183	196	1.510409	0.115446925	1.5088896	306.60922	0	23.435455						990	13	3	NaN	NaN	NaN	0.01966	1	8913	8913		72.428	19.649	1	580000			18535	1932	10619	10956	14730	14730					0.03830617003529824
NPIGFVEKL	9	Unmodified	_NPIGFVEKL_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.79239227470003	2	508.792392	1015.57023	1.702	0.00086594	-1.2666	-0.00064446	0.43532	0.00022149	508.79211756605434	24.695	0.14472	24.695	24.623	24.767	0	1278	58	0.85049206	0.035039425	0.85049206	345.27707	0	14.225067						258	7	3	NaN	NaN	NaN	0.030261	1	9214	9214		58.769	25.344	1	58653			18536	511	10620	10957	14731	14731					0.06306930965661195
NPIGFVEKL	9	Unmodified	_NPIGFVEKL_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.79239227470003	2	508.792392	1015.57023	1.0698	0.00054433	-0.81128	-0.00041277	0.25857	0.00013156	508.79241267799256	24.719	0.14467	24.707	24.61	24.755	-0.012392	1278	55	0.85049206	0.03319341	0.8489726	345.27707	0	13.475647						243	7	3	NaN	NaN	NaN	0.090258	1	9041	9041		37.231	16.782	1	53843			18537	511	10620	10957	14732	14732					0.06306930965661195
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5200527834	1	973.520053	972.512776	2.2081	0.0021496	-1.1878	-0.0011564	1.0203	0.00099326	973.5186567565578	25.033	0.26542	25.033	24.936	25.202	0	249	157	1.4713576	0.09248018	1.4713576	298.847	0	18.78363						664	12	3	NaN	NaN	NaN	0.0092442	1	7680	7680		93.929	53.775	1	198140			18538	2025	10621	10958	14733	14733					0.025420439694244124
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.5200527834	1	973.520053	972.512776	1.9565	0.0019047	-1.1554	-0.0011249	0.80102	0.00077981	973.5194423008176	25.033	0.193	25.021	24.972	25.165	-0.012011	246	130	1.4731345	0.07649422	1.4716152	299.20792	0	15.536743						592	9	3	NaN	NaN	NaN	0.030545	1	7531	7531		58.398	23.101	1	185910			18539	2025	10621	10958	14734	14734					0.025420439694244124
NPIWNETLV	9	Unmodified	_NPIWNETLV_					0	0	0		ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5625863000998	1	1085.56259	1084.55531	1.4406	0.0015638	-3.1179	-0.0033847	-1.6773	-0.0018208	1085.5609067474218	27.205	0.096502	27.205	27.181	27.277	0	84	79	1.5688156	0.045951605	1.5688156	318.1814	0	9.319733						159	5	2	NaN	NaN	NaN	0.35794	1	12167	12167		15.463	1.9996	1	18980			18540	1034	10622	10959	14735	14735					0.0164143909764789
NPKQKASK	8	Unmodified	_NPKQKASK_					0	0	0			REV__nc|ENSG00000102468|P28223-2|HTR2A	REV__nc|ENSG00000102468|P28223-2|HTR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.76670884045	2	450.766709	899.518865	-0.58782	-0.00026497	-5.4415	-0.0024528	-6.0293	-0.0027178	450.7649289187042	56.587	0.11979	56.586	56.538	56.658	-0.00056458	1314	34	0.8283535	0.020305753	0.8268341	336.86887	0	8.257782						98	6	3	NaN	NaN	NaN	0.84727	1	5949	5949		1.2418	0	1	10441	+		18541	13099	10623	10960	14736	14736					0.06508606991610577
NPKQVLILG	9	Unmodified	_NPKQVLILG_					0	0	0		tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.3082095144001	2	491.30821	980.601866	1.7664	0.00086783	-0.65068	-0.00031968	1.1157	0.00054814	491.3070285795657	56.085	0.048046	56.085	56.061	56.109	0	1155	43	0.92591566	0.02569741	0.92591566	376.0762	0	10.437439						86	3	3	NaN	NaN	NaN	0.67989	1	7910	7910		0.92586	0.23471	1	20590			18542	14008	10624	10961	14737	14737					0.1107892371962862
NPLHLDYVM	9	Oxidation (M)	_NPLHLDYVM(Oxidation (M))_		NPLHLDYVM(1)		NPLHLDYVM(70)	0	0	1		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.27096672835	2	559.270967	1116.52738	1.8861	0.0010549	2.327	0.0013014	4.2132	0.0023563	559.2731375442871	21.778	0.24089	21.778	21.705	21.946	0	1245	85	0.87076044	0.051550567	0.87076044	353.07782	0	20.902832						453	11	3	NaN	NaN	NaN	0.021751	1	13523	13523		69.782	46.448	1	103360			18543	2684	10625	10962	14738	14738		305			-0.026222071540814795
NPLHLDYVM	9	Oxidation (M)	_NPLHLDYVM(Oxidation (M))_		NPLHLDYVM(1)		NPLHLDYVM(70)	0	0	1		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.27096672835	2	559.270967	1116.52738	1.5116	0.00084537	0.75904	0.00042451	2.2706	0.0012699	559.2718468950326	21.778	0.1685	21.764	21.691	21.86	-0.013895	1245	76	0.87076044	0.046034753	0.869241	353.07782	0	18.66626						392	8	4	NaN	NaN	NaN	0.021751	1	13132	13132		69.782	45.22	1	92174			18544	2684	10625	10962	14739	14739		305			-0.026222071540814795
NPLIEIISI	9	Unmodified	_NPLIEIISI_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.6084738602002	1	1011.60847	1010.6012	1.0037	0.0010153	-0.27532	-0.00027852	0.72834	0.00073679	1011.6082375367552	35.048	0.12064	35.048	34.999	35.12	0	138	61	1.5369828	0.035407305	1.5369828	312.0117	0	7.1877747						177	6	3	NaN	NaN	NaN	0.030696	1	9013	9013		58.2	13.035	1	16235			18545	3544	10626	10963	14740	14740					0.09632084279917308
NPLIEIISI	9	Unmodified	_NPLIEIISI_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.6084738602002	1	1011.60847	1010.6012	1.3822	0.0013982	0.64084	0.00064828	2.023	0.0020465	1011.6085943383096	35.046	0.096539	35.046	34.998	35.094	-4.5776E-05	135	64	1.5387528	0.037175775	1.5372335	312.371	0	7.546753						126	5	2	NaN	NaN	NaN	0.012495	1	8836	8836		85.344	18.19	1	14805			18546	3544	10626	10963	14741	14741					0.09632084279917308
NPLVDFVEL	9	Unmodified	_NPLVDFVEL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5564382897	1	1045.55644	1044.54916	1.1484	0.0012007	-0.72617	-0.00075925	0.42226	0.00044149	1045.5552062659215	33.697	0.12067	33.697	33.648	33.769	0	111	100	1.5529068	0.058400393	1.5529068	315.10635	0	11.850281						311	6	3	NaN	NaN	NaN	0.01452	1	10405	10405		79.199	39.74	1	36833			18547	586	10627	10964	14742	14742					0.028669208661540324
NPLVDFVEL	9	Unmodified	_NPLVDFVEL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5564382897	1	1045.55644	1044.54916	0.7821	0.00081773	0.66389	0.00069413	1.446	0.0015119	1045.5576270020179	33.695	0.12068	33.694	33.67	33.79	-0.0018501	108	106	1.5546752	0.061939836	1.5531558	315.46518	0	12.568451						290	6	3	NaN	NaN	NaN	0.0034808	1	10196	10196		106.56	61.919	1	33519			18548	586	10627	10964	14743	14743					0.028669208661540324
NPLYTEWIL	9	Unmodified	_NPLYTEWIL_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000083168|ENST00000265713|KAT6A;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8029569610001	2	574.802957	1147.59136	1.5381	0.00088408	-7.2384	-0.0041607	-5.7003	-0.0032766	574.8002451155993	34.421	0.16892	34.421	34.396	34.565	0	1209	79	0.892844	0.04783213	0.892844	361.9128	0	19.388672						197	8	3	NaN	NaN	NaN	0.39244	1	14723	14723		14.042	3.4366	1	17554			18549	942	10628	10965	14744	14744					0.02346896274525534
NPLYTEWIL	9	Unmodified	_NPLYTEWIL_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000083168|ENST00000265713|KAT6A;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5986374554	1	1148.59864	1147.59136	2.6645	0.0030604	-2.2173	-0.0025468	0.44721	0.00051367	1148.5961585616403	34.445	0.072384	34.445	34.421	34.493	0	57	52	1.5847093	0.030014992	1.5847093	321.18295	0	6.0833435						124	4	3	NaN	NaN	NaN	0.089764	1	14724	14724		37.302	11.187	1	8555.1			18550	942	10628	10965	14745	14745					0.02346896274525534
NPLYTEWIL	9	Unmodified	_NPLYTEWIL_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000083168|ENST00000265713|KAT6A;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8029569610001	2	574.802957	1147.59136	0.96669	0.00055566	-4.6287	-0.0026606	-3.662	-0.0021049	574.7997212331975	34.443	0.21692	34.443	34.322	34.539	-0.0006485	1203	112	0.8965218	0.06802112	0.89500237	363.4036	0	27.572235						218	10	2	NaN	NaN	NaN	0.13602	1	14231	14231		30.61	12.811	1	20014			18551	942	10628	10965	14746	14746					0.02346896274525534
NPLYTEWIL	9	Unmodified	_NPLYTEWIL_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000083168|ENST00000265713|KAT6A;ENSG00000156650|ENST00000287239|KAT6B	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1148.5986374554	1	1148.59864	1147.59136	2.2806	0.0026195	-1.0772	-0.0012373	1.2034	0.0013822	1148.5954184129012	34.443	0.096481	34.443	34.419	34.515	-0.0006485	60	55	1.582944	0.031785727	1.5814246	320.8252	0	6.4421997						78	5	2	NaN	NaN	NaN	0.46215	1	14232	14232		11.17	1.4243	1	6086.6			18552	942	10628	10965	14747	14747					0.02346896274525534
NPMACLFQNF	10	Unmodified	_NPMACLFQNF_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1184.5227120952998	1	1184.52271	1183.51544	2.2467	0.0026613	-4.3208	-0.0051181	-2.0741	-0.0024568	1184.5158246281662	39.983	0.024136	39.983	39.983	40.008	0	162	28	1.5228153	0.015945911	1.5228153	308.52707	0	3.2306824						32	2	2	NaN	NaN	NaN	0.77421	1	15949	15949		1.9246	0.22244	1	1906.2			18553	5883	10629	10966	14748	14748					-0.06898147168931246
NPMGGFCE	8	Unmodified	_NPMGGFCE_					0	0	0		ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.3171359957	1	854.317136	853.30986	1.8506	0.001581	-7.6687	-0.0065515	-5.8181	-0.0049705	854.3113147245379	24.14	0.048302	24.14	24.116	24.164	0	522	37	1.3088527	0.021535516	1.3088527	266.35895	0	4.382599						45	3	2	NaN	NaN	NaN	0.84455	1	5435	5435		2.7852	1.1148	1	2451.2			18554	5924	10630	10967	14749	14749					-0.12266300628334648
NPMRSERCCSL	11	Unmodified	_NPMRSERCCSL_					0	0	0		nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL	nc|ENSG00000239900|P30566-2|ADSL	nc|ENSG00000239900|P30566-2|ADSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.2862992165501	2	648.286299	1294.55805	1.1402	0.00073916	6.8498	0.0044406	7.99	0.0051798	648.2908533052787	35.384	0.072155	35.385	35.361	35.433	0.00053024	1134	43	0.9387595	0.025675297	0.93724006	380.01117	0	10.393402						62	4	2	NaN	NaN	NaN	0.7072	1	17831	17831		6.9844	1.2902	1	6230.1			18555	6064	10631	10968	14750	14750					-0.07745120102981673
NPMRSERCCSL	11	Unmodified						0	0	0		nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL	nc|ENSG00000239900|P30566-2|ADSL	nc|ENSG00000239900|P30566-2|ADSL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	648.286299	1294.55805	1.0363	0.00067185	9.698	0.0062871	10.734	0.0069589	648.2912823231646	35.434	0.072334	35.434	35.434	35.506	0	1143	31	0.9332562	0.018345416	0.9332562	377.78342		7.426239	0.024549	0.0021853	-0.0019919	NaN	6.9844	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3844.7			18556	6064	10631	10968							-0.07745120102981673
NPMTKEPKL	9	Unmodified	_NPMTKEPKL_					0	0	0		nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF	nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2891594815001	2	529.289159	1056.56377	1.5237	0.00080648	-0.894	-0.00047318	0.6297	0.00033329	529.2883967145656	14.357	0.11993	14.357	14.333	14.453	0	1266	43	0.85786515	0.025803149	0.85786515	348.08966	0	10.46994						115	6	3	NaN	NaN	NaN	0.34188	1	10948	10948		16.226	4.1771	1	11233			18557	3036	10632	10969	14751	14751					0.037746697426428
NPMTKEPKL	9	Unmodified	_NPMTKEPKL_					0	0	0		nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1;ENST00000465836.1_1_2:128944884-128947313:+|nuORF	nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2891594815001	2	529.289159	1056.56377	1.0572	0.00055958	-0.32575	-0.00017242	0.73147	0.00038716	529.2897030156706	14.452	0.11979	14.441	14.393	14.513	-0.011218	1263	31	0.85970795	0.018428862	0.8581885	348.83737	0	7.4777527						104	6	3	NaN	NaN	NaN	0.090258	1	10722	10722		37.231	22.806	1	8065.6			18558	3036	10632	10969	14752	14752					0.037746697426428
NPMYPLLTSVH	11	Unmodified	_NPMYPLLTSVH_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.55327433506665	3	424.553274	1270.63799	2.0228	0.00085877	-8.4073	-0.0035693	-6.3845	-0.0027106	424.5503999353623	13.685	0.16815	13.685	13.589	13.757	0	1446	37	0.7469324	0.022258759	0.7469324	453.62527	0	13.518158						114	8	2	NaN	NaN	NaN	0.73455	1	18246	18246		2.0359	0	1	10864	+		18559	9236	10633	10970	14753	14753					0.01350012834154768
NPNRFPIDDP	10	Unmodified	_NPNRFPIDDP_					0	0	0			REV__ENSG00000006704|ENST00000424337|GTF2IRD1	REV__ENSG00000006704|ENST00000424337|GTF2IRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1184.5694625919998	1	1184.56946	1183.56219	1.5192	0.0017996	0.22911	0.0002714	1.7484	0.002071	1184.5698927845567	33.068	0.24113	33.066	32.945	33.186	-0.0024796	63	76	1.5811787	0.04415381	1.5796592	320.3515	0	8.945679						262	11	3	NaN	NaN	NaN	0.33935	1	15346	15346		26.115	2.9974	1	33661	+		18560	8374	10634	10971	14754	14754					-0.022252480217730408
NPQFLDPVL	9	Unmodified	_NPQFLDPVL_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.78202455365	2	521.782025	1041.5495	1.4798	0.00077212	-1.2214	-0.00063732	0.25834	0.00013479	521.7813012070517	30.366	0.12067	30.366	30.318	30.439	0	1266	79	0.85786515	0.04793048	0.85786515	348.1542	0	19.451996						218	6	3	NaN	NaN	NaN	0.089764	1	10281	10281		37.302	6.6922	1	27344			18561	668	10635	10972	14755	14755					0.030383405859765844
NPQFLDPVL	9	Unmodified	_NPQFLDPVL_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5567726406998	1	1042.55677	1041.5495	1.6198	0.0016887	3.0153	0.0031436	4.635	0.0048323	1042.5602533910499	30.366	0.12067	30.366	30.318	30.439	0	144	70	1.533442	0.040729165	1.533442	311.16837	0	8.264832						188	6	2	NaN	NaN	NaN	0.010404	1	10283	10283		91.563	57.124	1	27610			18562	668	10635	10972	14756	14756					0.030383405859765844
NPQFLDPVL	9	Unmodified	_NPQFLDPVL_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.78202455365	2	521.782025	1041.5495	0.99866	0.00052109	-0.73548	-0.00038376	0.26319	0.00013733	521.7811377601976	30.366	0.096514	30.359	30.311	30.407	-0.0064106	1266	79	0.85786515	0.047899425	0.8563457	348.1542	0	19.439392						209	5	3	NaN	NaN	NaN	0.35794	1	10074	10074		15.463	1.0377	1	27560			18563	668	10635	10972	14757	14757					0.030383405859765844
NPQFLDPVL	9	Unmodified	_NPQFLDPVL_					0	0	0		TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5567726406998	1	1042.55677	1041.5495	1.0165	0.0010598	1.7278	0.0018013	2.7443	0.0028611	1042.5600170241682	30.366	0.12066	30.359	30.311	30.431	-0.0064106	138	73	1.5369828	0.042497754	1.5354633	311.88687	0	8.623718						213	6	3	NaN	NaN	NaN	0.026469	1	10077	10077		63.731	24.272	1	25712			18564	668	10635	10972	14758	14758					0.030383405859765844
NPQPTISLQ	9	Unmodified	_NPQPTISLQ_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.26928131915	2	499.269281	996.52401	1.3379	0.00066796	-1.5259	-0.00076182	-0.18799	-9.3856E-05	499.2679055378702	20.622	0.12044	20.622	20.597	20.718	0	1311	64	0.83019954	0.03874451	0.83019954	337.12497	0	15.733246						117	6	2	NaN	NaN	NaN	0.58159	1	8443	8443		6.2502	0	1	15388			18565	4803	10636	10973	14759	14759					0.025608660635725755
NPRAEDARCYQ	11	Unmodified	_NPRAEDARCYQ_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.7989426031	2	661.798943	1321.58333	1.5775	0.001044	-7.3666	-0.0048752	-5.7891	-0.0038312	661.7935905605585	20.742	0.096359	20.728	20.704	20.801	-0.014088	1065	31	0.9808926	0.018296003	0.97937316	396.98102	0	7.404663						76	5	2	NaN	NaN	NaN	0.72342	1	18270	18270		5.9198	0.22562	1	6578.9	+		18566	9854	10637	10974	14760	14760					-0.06459605984559857
NPSDLLEIL	9	Unmodified	_NPSDLLEIL_					0	0	0		ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5513529118001	1	1013.55135	1012.54408	1.3293	0.0013474	-0.1973	-0.00019998	1.132	0.0011474	1013.5513645431738	34.035	0.14484	34.035	33.986	34.131	0	177	88	1.5139546	0.051419616	1.5139546	307.32895	0	10.438049						206	7	2	NaN	NaN	NaN	0.024221	1	9088	9088		66.656	5.6748	1	24943			18567	1551	10638	10975	14761	14761					0.03830617003529824
NPSEFFVDVM	10	Unmodified	_NPSEFFVDVM_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000004975|ENST00000005340|DVL2	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.7682568639	2	592.768257	1183.52196	1.0392	0.000616	-0.75538	-0.00044777	0.28382	0.00016824	592.7678243337358	32.032	0.16892	32.032	32.008	32.177	0	1221	82	0.885486	0.049658418	0.885486	358.8008	0	20.121704						262	8	2	NaN	NaN	NaN	0.00031519	1	15950	15950		96.341	31.791	1	49331			18568	4094	10639	10976	14762	14762					-0.06245930736554328
NPSEFFVDVM	10	Unmodified	_NPSEFFVDVM_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000004975|ENST00000005340|DVL2	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.7682568639	2	592.768257	1183.52196	0.37896	0.00022463	0.33101	0.00019621	0.70996	0.00042084	592.7686908111476	32.031	0.14479	32.027	31.979	32.123	-0.0037613	1218	73	0.8873258	0.0441432	0.8858064	359.5463	0	17.886902						221	7	2	NaN	NaN	NaN	0.19179	1	15343	15343		36.235	8.9386	1	50851			18569	4094	10639	10976	14763	14763					-0.06245930736554328
NPSEFFVDVM	10	Oxidation (M)	_NPSEFFVDVM(Oxidation (M))_		NPSEFFVDVM(1)		NPSEFFVDVM(110)	0	0	1		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000004975|ENST00000005340|DVL2	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.76571417495	2	600.765714	1199.51688	1.5474	0.00092963	0.37372	0.00022452	1.9211	0.0011541	600.7656058406088	27.833	0.21717	27.833	27.76	27.977	0	1224	100	0.883646	0.060667455	0.883646	358.00024	0	24.578796						610	10	5	NaN	NaN	NaN	6.1305E-05	1	16452	16452		112.76	42.161	1	101530			18570	4094	10639	10977	14764	14764		440			-0.07490234599185897
NPSEFFVDVM	10	Oxidation (M)	_NPSEFFVDVM(Oxidation (M))_		NPSEFFVDVM(1)		NPSEFFVDVM(78)	0	0	1		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000004975|ENST00000005340|DVL2	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.76571417495	2	600.765714	1199.51688	0.87428	0.00052524	-0.5647	-0.00033925	0.30958	0.00018598	600.7651523225259	27.832	0.19309	27.822	27.75	27.943	-0.009552	1224	103	0.883646	0.062502444	0.88212657	358.00024	0	25.322235						617	9	5	NaN	NaN	NaN	0.004521	1	15802	15802		78.289	25.531	1	110160			18571	4094	10639	10977	14765	14765		440			-0.07490234599185897
NPSRWEVVL	9	Unmodified	_NPSRWEVVL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5894697526	1	1099.58947	1098.58219	1.4679	0.0016141	1.0816	0.0011893	2.5495	0.0028034	1099.589957212917	24.237	0.09656	24.237	24.188	24.285	0	129	67	1.5422925	0.03893149	1.5422925	312.75186	0	7.894684						189	5	3	NaN	NaN	NaN	0.31471	1	12800	12800		17.97	10.839	1	21059			18572	3816	10640	10978	14766	14766					0.03684547708849095
NPSRWEVVL	9	Unmodified	_NPSRWEVVL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5894697526	1	1099.58947	1098.58219	1.8557	0.0020405	0.39179	0.0004308	2.2475	0.0024713	1099.589204605403	24.26	0.096558	24.248	24.199	24.296	-0.012749	126	73	1.544062	0.042470813	1.5425426	313.1107	0	8.612396						173	5	3	NaN	NaN	NaN	0.28943	1	12467	12467		19.592	7.5432	1	22505			18573	3816	10640	10978	14767	14767					0.03684547708849095
NPSRWEVVL	9	Unmodified	_NPSRWEVVL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2983731096001	2	550.298373	1098.58219	1.6802	0.00092464	0.7298	0.00040161	2.41	0.0013262	550.2987029638007	24.236	0.26551	24.224	24.199	24.465	-0.012747	1266	82	0.85786515	0.04973364	0.8563457	347.9183	0	20.170105						535	12	4	NaN	NaN	NaN	0.026443	1	12468	12468		63.765	31.312	1	205810			18574	3816	10640	10978	14768	14768					0.03684547708849095
NPSRWEVVL	9	Unmodified						0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.298373	1098.58219	1.4558	0.00080114	1.0057	0.00055344	2.4615	0.0013546	550.2989994859505	24.213	0.24134	24.213	24.14	24.381	0	1269	124	0.8560222	0.07547253	0.8560222	347.17084		30.608856	-0.0055431	0.00019256	-0.00016177	NaN	63.765	641	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260830			18575	3816	10640	10978							0.03684547708849095
NPSSDVAAL	9	Unmodified	_NPSSDVAAL_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4312377760999	1	873.431238	872.423961	1.905	0.0016639	-0.33087	-0.00028899	1.5741	0.0013749	873.4308695979898	19.78	0.21634	19.78	19.756	19.972	0	426	103	1.3661768	0.060841918	1.3661768	277.9281	0	12.37738						414	10	4	NaN	NaN	NaN	0.0052656	1	5694	5694		102.05	43.811	1	68475			18576	2914	10641	10979	14769	14769					-0.017353712702515622
NPSSDVAAL	9	Unmodified	_NPSSDVAAL_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4312377760999	1	873.431238	872.423961	1.2574	0.0010983	0.16427	0.00014347	1.4217	0.0012417	873.4313916785301	19.803	0.24065	19.789	19.741	19.982	-0.014141	423	91	1.3679651	0.053678393	1.3664457	278.2919	0	10.920044						287	11	2	NaN	NaN	NaN	0.010404	1	5558	5558		91.563	27.013	1	63633			18577	2914	10641	10979	14770	14770					-0.017353712702515622
NPSSICKRP	9	Unmodified	_NPSSICKRP_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.26347604725004	2	501.263476	1000.5124	1.0751	0.00053892	-1.4539	-0.00072876	-0.37873	-0.00018984	501.263333299971	21.007	0.12029	20.993	20.921	21.041	-0.014086	1524	37	0.698637	0.022324085	0.69711757	283.68503	0	9.064819						91	6	2	NaN	NaN	NaN	0.6532	1	8445	8445		3.2116	0	1	6904	+		18578	9766	10642	10980	14771	14771					0.012163457685915091
NPSSICKRP	9	Unmodified						0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.263476	1000.5124	1.3923	0.0006979	-1.5069	-0.00075537	-0.11465	-5.7471E-05	501.26313020120807	20.766	0.096418	20.766	20.718	20.814	0	1530	37	0.6949163	0.022328973	0.6949163	282.17422		9.066772	-0.11347	-2.6765E-05	-0.0011006	NaN	3.2116	82	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5824.1	+		18579	9766	10642	10980							0.012163457685915091
NPSSICKRP	9	Unmodified						0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.263476	1000.5124	1.0751	0.00053892	-1.4539	-0.00072876	-0.37873	-0.00018984	501.263333299971	21.007	0.12029	20.993	20.921	21.041	-0.014086	1524	37	0.698637	0.022324085	0.69711757	283.68503		9.064819	0.11347	2.6456E-05	0.0011006	NaN	3.2116	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6904	+		18580	9766	10642	10980							0.012163457685915091
NPSSPEPAP	9	Unmodified	_NPSSPEPAP_					0	0	0			REV__ENSG00000171222|ENST00000305978|SCAND1	REV__ENSG00000171222|ENST00000305978|SCAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.4155877119	1	895.415588	894.408311	1.8917	0.0016939	-0.18746	-0.00016786	1.7043	0.001526	895.4154889177266	23.561	0.04822	23.548	23.524	23.572	-0.013048	459	142	1.3464937	0.08400214	1.3449743	273.81934	0	17.082458						132	3	2	NaN	NaN	NaN	0.62619	1	5872	5872		4.4131	0.44458	1	10234	+		18581	10616	10643	10981	14772	14772					-0.04311657787286549
NPSSPEPAP	9	Unmodified						0	0	0			REV__ENSG00000171222|ENST00000305978|SCAND1	REV__ENSG00000171222|ENST00000305978|SCAND1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	895.415588	894.408311	1.9425	0.0017393	-1.2088	-0.0010824	0.73371	0.00065697	895.4139118770007	23.538	0.072273	23.538	23.513	23.586	0	456	64	1.348284	0.03758478	1.348284	274.18344		7.643158	-0.0053186	-0.00044118	0.0016549	NaN	4.4131	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7899.9	+		18582	10616	10643	10981							-0.04311657787286549
NPSSPEPAP	9	Unmodified						0	0	0			REV__ENSG00000171222|ENST00000305978|SCAND1	REV__ENSG00000171222|ENST00000305978|SCAND1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	895.415588	894.408311	1.8917	0.0016939	-0.18746	-0.00016786	1.7043	0.001526	895.4154889177266	23.561	0.04822	23.548	23.524	23.572	-0.013048	459	142	1.3464937	0.08400214	1.3449743	273.81934		17.082458	0.0053186	0.00047332	-0.0016549	NaN	4.4131	132	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10234	+		18583	10616	10643	10981							-0.04311657787286549
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7929235909501	2	530.792924	1059.57129	2.8984	0.0015384	-3.2912	-0.001747	-0.39285	-0.00020852	530.7906688514786	23.296	0.31355	23.296	23.224	23.538	0	1275	133	0.85233563	0.08112198	0.85233563	345.83334	0	32.91507						1167	14	6	NaN	NaN	NaN	0.017791	1	11078	11078		74.794	39.498	1	2443200			18584	2698	10644	10982	14773	14773					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5785707153	1	1060.57857	1059.57129	2.3249	0.0024657	-1.2892	-0.0013673	1.0357	0.0010985	1060.5774104321556	23.296	0.14466	23.296	23.272	23.417	0	111	91	1.5529068	0.053071618	1.5529068	315.04813	0	10.766998						329	7	4	NaN	NaN	NaN	0.061945	1	11080	11080		41.839	22.72	1	48727			18585	2698	10644	10982	14774	14774					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7929235909501	2	530.792924	1059.57129	1.8738	0.00099457	6.8773	0.0036504	8.7511	0.004645	530.7971324892133	23.706	0.14456	23.706	23.682	23.827	0	1287	55	0.8449601	0.033189833	0.8449601	342.8407	0	13.466675						254	7	3	NaN	NaN	NaN	0.3106	1	11081	11081		18.233	8.6219	1	37232			18586	2698	10644	10982	14775	14775					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7929235909501	2	530.792924	1059.57129	2.499	0.0013265	-1.8505	-0.00098225	0.6485	0.00034422	530.7916517435247	23.344	0.3619	23.331	23.258	23.62	-0.013294	1281	175	0.84864825	0.107014656	0.8471288	344.33722	0	43.42099						1248	16	6	NaN	NaN	NaN	0.017791	1	10842	10842		74.794	41.369	1	2373400			18587	2698	10644	10982	14776	14776					0.04389145334562272
NPSVREFVL	9	Unmodified	_NPSVREFVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5785707153	1	1060.57857	1059.57129	1.9802	0.0021002	-0.3174	-0.00033662	1.6628	0.0017636	1060.5783350573527	23.344	0.16889	23.331	23.283	23.451	-0.013294	111	85	1.5529068	0.04952824	1.5513873	315.04813	0	10.048096						303	8	3	NaN	NaN	NaN	0.12866	1	10843	10843		31.675	15.259	1	47108			18588	2698	10644	10982	14777	14777					0.04389145334562272
NPTEEYAQL	9	Unmodified	_NPTEEYAQL_					0	0	0		ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.74837870155	2	532.748379	1063.4822	0.49138	0.00026178	-3.7114	-0.0019772	-3.22	-0.0017155	532.7467509584735	20.815	0.21678	20.801	20.704	20.921	-0.014088	1254	106	0.8652351	0.06454629	0.86371565	351.05072	0	26.188293						252	10	2	NaN	NaN	NaN	0.21199	1	11007	11007		24.562	12.513	1	22097			18589	3794	10645	10983	14778	14778					-0.04699734415612511
NPTEPDHAI	9	Unmodified	_NPTEPDHAI_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.23543850179993	2	497.235439	992.456324	1.4719	0.0007319	-1.8014	-0.00089573	-0.32947	-0.00016382	497.2340853301249	14.429	0.11989	14.429	14.405	14.525	0	1347	79	0.8080346	0.048029125	0.8080346	328.1426	0	19.504608						177	6	3	NaN	NaN	NaN	0.089764	1	8300	8300		37.302	20.886	1	20256			18590	3989	10646	10984	14779	14779					-0.04020583867247751
NPTEPDHAI	9	Unmodified	_NPTEPDHAI_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.23543850179993	2	497.235439	992.456324	0.90793	0.00045145	-0.0376	-1.8696E-05	0.87033	0.00043276	497.2350392580218	14.428	0.16771	14.417	14.393	14.561	-0.011219	1347	73	0.8080346	0.04433459	0.8065152	328.1426	0	18.004272						241	8	3	NaN	NaN	NaN	0.089764	1	8134	8134		37.302	7.704	1	21735			18591	3989	10646	10984	14780	14780					-0.04020583867247751
NPTKHKTVF	9	Unmodified	_NPTKHKTVF_					0	0	0		ENST00000518781.1_1_8:67351545-67351743:+|nuORF	ENST00000518781.1_1_8:67351545-67351743:+|nuORF	ENST00000518781.1_1_8:67351545-67351743:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.3009157985501	2	536.300916	1070.58728	1.6629	0.00089182	-10.768	-0.005775	-9.1053	-0.0048832	536.2951262803697	29.449	0.16896	29.449	29.401	29.57	0	1293	70	0.84127116	0.042406917	0.84127116	341.29892	0	17.204254						208	8	2	NaN	NaN	NaN	0.31471	1	11592	11592		17.97	2.7943	1	32195			18592	7386	10647	10985	14781	14781					0.05480851571473977
NPTQVIETL	9	Unmodified	_NPTQVIETL_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;BCL2L13-VPS8|1|fusion	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5466018849003	1	1014.5466	1013.53933	2.0855	0.0021159	0.67169	0.00068146	2.7572	0.0027973	1014.5467153844096	25.081	0.14477	25.081	25.009	25.153	0	234	55	1.4802408	0.031968117	1.4802408	300.4812	0	6.48938						134	7	3	NaN	NaN	NaN	0.034172	1	9131	9131		53.652	21.976	1	8783.4			18593	3935	10648	10986	14782	14782					0.03309732860782333
NPTQVIETL	9	Unmodified						0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;BCL2L13-VPS8|1|fusion	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.5466	1013.53933	2.046	0.0020757	-2.2589	-0.0022918	-0.21296	-0.00021606	1014.545435006638	25.081	0.12062	25.069	25.021	25.141	-0.012011	237	46	1.4784646	0.026641488	1.4769452	300.12064		5.408081	-0.006106	-0.0015795	-0.0016479	NaN	53.652	104	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8245			18594	3935	10648	10986							0.03309732860782333
NPTRGPVP	8	Unmodified	_NPTRGPVP_					0	0	0			REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.4577272981002	1	837.457727	836.450451	1.5272	0.001279	-10.967	-0.0091844	-9.4398	-0.0079055	837.4489230705086	30.632	0.072392	30.632	30.632	30.704	0	438	34	1.359022	0.019681096	1.359022	276.65707	0	4.0065002						45	4	2	NaN	NaN	NaN	0.6053	1	5221	5221		24.961	8.5444	1	2749.6	+		18595	8450	10649	10987	14783	14783					0.02568362411761882
NPTRGPVP	8	Unmodified						0	0	0			REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	837.457727	836.450451	1.5272	0.001279	-10.967	-0.0091844	-9.4398	-0.0079055	837.4489230705086	30.632	0.072392	30.632	30.632	30.704	0	438	34	1.359022	0.019681096	1.359022	276.65707		4.0065002	0.0034002	0.0002939	0.00075972	NaN	24.961	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2749.6	+		18596	8450	10649	10987							0.02568362411761882
NPVEVVGGLQ	10	Unmodified	_NPVEVVGGLQ_					0	0	0			REV__nc|ENSG00000244694|Q6ZW05|PTCHD4	REV__nc|ENSG00000244694|Q6ZW05|PTCHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5469362359003	1	1011.54694	1010.53966	2.0831	0.0021071	-1.4374	-0.001454	0.64562	0.00065308	1011.5444628301859	25.394	0.096519	25.382	25.382	25.479	-0.012011	192	88	1.5050892	0.051463246	1.5035697	305.53745	0	10.447205						168	5	3	NaN	NaN	NaN	0.2504	1	8827	8827		31.198	8.1122	1	18261	+		18597	11360	10650	10988	14784	14784					0.03481152580638991
NPVEYSIVM	9	Unmodified	_NPVEYSIVM_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5128589155	1	1051.51286	1050.50558	2.2022	0.0023157	-0.12177	-0.00012804	2.0805	0.0021876	1051.512208655009	26.674	0.16943	26.674	26.625	26.795	0	189	97	1.5068626	0.056711793	1.5068626	305.74075	0	11.506744						304	8	3	NaN	NaN	NaN	0.0042638	1	10646	10646		104.2	70.5	1	45017			18598	3033	10651	10989	14785	14785					-0.01765011902648439
NPVEYSIVM	9	Unmodified	_NPVEYSIVM_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5128589155	1	1051.51286	1050.50558	1.3655	0.0014359	0.68581	0.00072114	2.0513	0.002157	1051.5134340439115	26.697	0.16894	26.687	26.614	26.783	-0.010645	186	85	1.5086359	0.04963863	1.5071164	306.10056	0	10.071625						228	8	2	NaN	NaN	NaN	0.015029	1	10425	10425		78.289	33.987	1	42162			18599	3033	10651	10989	14786	14786					-0.01765011902648439
NPVEYSIVM	9	Oxidation (M)	_NPVEYSIVM(Oxidation (M))_		NPVEYSIVM(1)		NPVEYSIVM(66)	0	0	1		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5077735375999	1	1067.50777	1066.5005	2.0243	0.002161	-0.77123	-0.0008233	1.2531	0.0013377	1067.5076695646176	22.621	0.12062	22.621	22.597	22.718	0	174	85	1.5157272	0.049643874	1.5157272	307.47958	0	10.07074						254	6	3	NaN	NaN	NaN	0.024359	1	11397	11397		66.481	24.697	1	30866			18600	3033	10651	10990	14787	14787		344			-0.030093157652800073
NPVEYSIVM	9	Oxidation (M)	_NPVEYSIVM(Oxidation (M))_		NPVEYSIVM(1)		NPVEYSIVM(78)	0	0	1		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5077735375999	1	1067.50777	1066.5005	1.135	0.0012116	-1.228	-0.0013109	-0.092985	-9.9263E-05	1067.505935842462	22.621	0.12062	22.607	22.583	22.704	-0.01354	177	79	1.5139546	0.0460881	1.5124352	307.12	0	9.349396						252	6	3	NaN	NaN	NaN	0.015029	1	11132	11132		78.289	40.987	1	34232			18601	3033	10651	10990	14788	14788		344			-0.030093157652800073
NPVFHPKY	8	Unmodified	_NPVFHPKY_					0	0	0			REV__ENSG00000168143|ENST00000306858|FAM83B	REV__ENSG00000168143|ENST00000306858|FAM83B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.26380201075	2	501.263802	1000.51305	1.3918	0.00069765	-3.0168	-0.0015122	-1.6251	-0.00081458	501.26184931031213	20.766	0.048216	20.766	20.742	20.79	0	1440	34	0.7506418	0.020398319	0.7506418	304.80185	0	8.282837						68	3	3	NaN	NaN	NaN	0.8439	1	8611	8611		3.1533	0	1	5814.9	+		18602	10498	10652	10991	14789	14789					0.012815084799399301
NPVFHPKY	8	Unmodified						0	0	0			REV__ENSG00000168143|ENST00000306858|FAM83B	REV__ENSG00000168143|ENST00000306858|FAM83B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.263802	1000.51305	1.3918	0.00069765	-3.0168	-0.0015122	-1.6251	-0.00081458	501.26184931031213	20.766	0.048216	20.766	20.742	20.79	0	1440	34	0.7506418	0.020398319	0.7506418	304.80185		8.282837	-0.089421	-0.0013222	-0.00016748	NaN	3.1533	68	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5814.9	+		18603	10498	10652	10991							0.012815084799399301
NPVFHPKY	8	Unmodified						0	0	0			REV__ENSG00000168143|ENST00000306858|FAM83B	REV__ENSG00000168143|ENST00000306858|FAM83B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.263802	1000.51305	1.2419	0.0006225	-0.38347	-0.00019222	0.85839	0.00043028	501.26373072633965	20.959	0.096201	20.945	20.921	21.017	-0.014088	1437	31	0.7524962	0.018542886	0.75097674	305.55484		7.5294495	0.089421	0.0013178	0.00016748	NaN	3.1533	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4944.3	+		18604	10498	10652	10991							0.012815084799399301
NPVNAWKENVF	11	Unmodified	_NPVNAWKENVF_					0	0	0		tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3329442084499	2	659.332944	1316.65134	2.1037	0.001387	-11.27	-0.0074307	-9.1663	-0.0060436	659.3260721897958	25.805	0.12068	25.793	25.745	25.865	-0.0116	1110	52	0.95342636	0.03115189	0.9519069	385.88	0	12.608093						195	6	3	NaN	NaN	NaN	0.29515	1	18215	18215		25.801	4.0299	1	44088			18605	13996	10653	10992	14790	14790					0.005675869377228082
NPVNAWKENVF	11	Unmodified						0	0	0		tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	tr|U7T626|U7T626_FUSNUNickeltransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00352PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	659.332944	1316.65134	1.9411	0.0012799	-12.162	-0.0080189	-10.221	-0.006739	659.3249928314606	25.781	0.19301	25.781	25.708	25.901	0	1110	73	0.95342636	0.04399103	0.95342636	385.88		17.804474	-0.0061371	-0.00074138	0.00075972	NaN	25.801	283	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46079			18606	13996	10653	10992							0.005675869377228082
NPVSQVEIL	9	Unmodified	_NPVSQVEIL_					0	0	0		ITGB6-RBMS1|7|fusion;ITGB6|p.V438Afs*11|1|0.27|ENSG00000115221|chr2:160137739-160137781|CATTCTGGGCTGACAAGTAATTCCAGGGCATCCCCCAGCCCCA/-|frameshift_variant;nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6;ITGB6-RBMS1|1|fusion;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	ITGB6-RBMS1|7|fusion	ITGB6-RBMS1|7|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5516872628001	1	998.551687	997.544411	2.1803	0.0021772	-3.1405	-0.003136	-0.96017	-0.00095878	998.5481984116498	26.143	0.2172	26.131	26.035	26.252	-0.011137	237	76	1.4784646	0.04440725	1.4769452	300.1852	0	9.016388						237	10	2	NaN	NaN	NaN	0.25548	1	8310	8310		21.771	3.8014	1	51809			18607	2000	10654	10993	14791	14791					0.04554036723379795
NPVSSAVTA	9	Unmodified	_NPVSSAVTA_					0	0	0			REV__ENSG00000102543|ENST00000251108|CDADC1	REV__ENSG00000102543|ENST00000251108|CDADC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	845.4363231540001	1	845.436323	844.429047	2.1888	0.0018505	-1.6992	-0.0014366	0.48957	0.0004139	845.4349924170842	18.868	0.071957	18.868	18.844	18.916	0	465	37	1.3429124	0.02148974	1.3429124	273.33585	0	4.373993						51	4	2	NaN	NaN	NaN	0.58159	1	5324	5324		6.2502	0	1	3231.9	+		18608	8884	10655	10994	14792	14792					0.0006093259238468818
NPYFEFVL	8	Unmodified	_NPYFEFVL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5087598156001	1	1028.50876	1027.50148	2.0626	0.0021214	0.74863	0.00076998	2.8112	0.0028913	1028.5095606934528	34.493	0.19302	34.493	34.445	34.638	0	135	130	1.5387528	0.0761863	1.5387528	312.30185	0	15.462585						611	9	4	NaN	NaN	NaN	0.076044	1	9663	9663		70.6	31.682	1	98190			18609	741	10656	10995	14793	14793					-0.011167333340381447
NPYFEFVL	8	Unmodified	_NPYFEFVL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5087598156001	1	1028.50876	1027.50148	1.3605	0.0013993	0.79532	0.00081799	2.1558	0.0022173	1028.5095807295281	34.492	0.19294	34.491	34.443	34.636	-0.0006485	135	121	1.5387528	0.07085216	1.5372335	312.30185	0	14.380005						578	9	4	NaN	NaN	NaN	0.084194	1	9473	9473		68.108	35.656	1	97708			18610	741	10656	10995	14794	14794					-0.011167333340381447
NPYSEFIL	8	Unmodified	_NPYSEFIL_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16870817-16871009:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4880243735003	1	982.488024	981.480748	2.0804	0.002044	0.52129	0.00051216	2.6017	0.0025561	982.488363105137	30.318	0.26544	30.318	30.198	30.463	0	210	133	1.4944444	0.078161	1.4944444	303.4974	0	15.87323						754	12	4	NaN	NaN	NaN	0.098732	1	7935	7935		64.55	11.792	1	100050			18611	1360;4142	10657	10996	14795	14795					-0.010733237136946627
NPYSEFIL	8	Unmodified	_NPYSEFIL_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16870817-16871009:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4880243735003	1	982.488024	981.480748	1.5075	0.0014811	0.4457	0.00043789	1.9532	0.001919	982.487814355306	30.317	0.28955	30.311	30.166	30.456	-0.0064087	222	130	1.4873441	0.076372504	1.4858247	302.05545	0	15.51001						775	13	4	NaN	NaN	NaN	0.029796	1	7760	7760		98.041	26.048	1	106540			18612	1360;4142	10657	10996	14796	14796					-0.010733237136946627
NQDALPAIV	9	Unmodified	_NQDALPAIV_					0	0	0			REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.5098224480998	1	940.509822	939.502546	1.7144	0.0016125	-0.48357	-0.0004548	1.2309	0.0011577	940.5093286429365	21.754	0.14442	21.754	21.705	21.85	0	330	97	1.4233059	0.05706227	1.4233059	289.2291	0	11.595581						321	7	4	NaN	NaN	NaN	0.024221	1	6813	6813		66.656	8.4568	1	56581	+		18613	11418	10658	10997	14797	14797					0.030374810348348547
NQDALPAIV	9	Unmodified	_NQDALPAIV_					0	0	0			REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.7585494573499	2	470.758549	939.502546	0.34045	0.00016027	0.7041	0.00033146	1.0445	0.00049173	470.7585168328215	21.729	0.096308	21.715	21.691	21.788	-0.013897	1371	58	0.79324204	0.035134315	0.7917226	322.38342	0	14.279022						95	5	2	NaN	NaN	NaN	0.041983	1	6675	6675		50.315	19.705	1	13096	+		18614	11418	10658	10997	14798	14798					0.030374810348348547
NQGENINQS	9	Unmodified	_NQGENINQS_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.225602097	2	502.225602	1002.43665	1.5441	0.00077549	-3.281	-0.0016478	-1.7369	-0.00087231	502.22479057183205	19.563	0.096294	19.549	19.5	19.597	-0.014141	1338	49	0.81357855	0.029553175	0.8120591	330.34903	0	11.999908						92	5	3	NaN	NaN	NaN	0.59509	1	8503	8503		5.6942	0	1	7335.4	+		18615	10114	10659	10998	14799	14799					-0.06446959877996505
NQIPKAAF	8	Unmodified	_NQIPKAAF_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4937784534	1	888.493778	887.486502	2.3162	0.002058	-0.44167	-0.00039242	1.8746	0.0016655	888.4938652509489	56.78	0.14416	56.78	56.756	56.9	0	324	226	1.42687	0.13396084	1.42687	290.19873	0	27.245148						489	7	3	NaN	NaN	NaN	0.84876	1	5911	5911		0.39566	0	1	282030			18616	4359	10660	10999	14800	14800					0.038258195885987334
NQKYREMYE	9	Unmodified	_NQKYREMYE_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.7875122495501	2	630.787512	1259.56047	1.5129	0.00095432	-0.99744	-0.00062917	0.51545	0.00032514	630.7864877157491	23.923	0.12058	23.91	23.837	23.958	-0.013048	1020	70	1.0083145	0.042001665	1.006795	408.28687	0	17.007324						186	6	3	NaN	NaN	NaN	0.68801	1	17209	17209		0.23014	0	1	14063			18617	523	10661	11000	14801	14801					-0.05892625102023885
NQKYREMYE	9	Unmodified						0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.787512	1259.56047	1.6038	0.0010116	0.51213	0.00032305	2.1159	0.0013347	630.7876595030589	23.875	0.12048	23.875	23.827	23.947	0	1020	76	1.0083145	0.045654	1.0083145	408.28683		18.486206	-0.017465	0.00088754	0.00075972	NaN	0.23014	187	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13715			18618	523	10661	11000							-0.05892625102023885
NQNSTSHYNAG	11	Unmodified	_NQNSTSHYNAG_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.7525153392501	2	596.752515	1191.49048	0.65768	0.00039247	-8.2376	-0.0049158	-7.58	-0.0045234	596.7476541376187	30.994	0.16897	30.994	30.946	31.115	0	1194	46	0.902037	0.027573109	0.902037	365.4792	0	11.171814						179	8	3	NaN	NaN	NaN	0.6011	1	16176	16176		13.949	3.3438	1	31634			18619	1453	10662	11001	14802	14802					-0.09760787446271024
NQPLKRRP	8	Unmodified	_NQPLKRRP_					0	0	0			REV__nc|ENSG00000145041|Q9Y4B6-3|DCAF1	REV__nc|ENSG00000145041|Q9Y4B6-3|DCAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.6061228698001	1	1008.60612	1007.59885	1.7472	0.0017623	3.0923	0.0031189	4.8396	0.0048812	1008.6090204314276	56.085	0.048046	56.085	56.061	56.109	0	174	49	1.5157272	0.028358936	1.5157272	307.70905	0	5.7571716						60	3	2	NaN	NaN	NaN	0.84727	1	8906	8906		1.2418	0.16982	1	7954.4	+		18620	9919	10663	11002	14803	14803					0.09535093385454729
NQPSLGWMM	9	Unmodified	_NQPSLGWMM_					0	0	0		ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2386123549501	2	532.238612	1062.46267	1.0652	0.00056696	-0.81331	-0.00043287	0.25193	0.00013409	532.2376593854623	26.36	0.19302	26.349	26.252	26.445	-0.011135	1296	73	0.8394264	0.04425788	0.83790696	340.58356	0	17.95691						223	9	4	NaN	NaN	NaN	0.39244	1	10956	10956		14.042	0	1	19818			18621	6671	10664	11003	14804	14804					-0.06606105231730908
NQPSLGWMM	9	Unmodified						0	0	0		ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.238612	1062.46267	2.1201	0.0011284	-1.2489	-0.0006647	0.87119	0.00046368	532.2387578077935	26.36	0.072386	26.36	26.312	26.384	0	1299	76	0.8375814	0.04610449	0.8375814	339.835		18.706146	0.0057116	-0.00018369	-0.00016277	NaN	14.042	158	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17508			18622	6671	10664	11003							-0.06606105231730908
NQSHPPIY	8	Unmodified	_NQSHPPIY_					0	0	0		ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4632066065001	1	955.463207	954.45593	0.11774	0.0001125	9.6731	0.0092423	9.7909	0.0093548	955.4750500513868	53.288	0.072041	53.288	53.264	53.336	-0.00053406	231	55	1.4820169	0.03196478	1.4804975	301.09152	0	6.4940796						98	4	3	NaN	NaN	NaN	0.8439	1	7042	7042		3.1533	0.36816	1	5301.1			18623	5858	10665	11004	14805	14805					-0.023119587964288257
NQWRQTNER	9	Unmodified	_NQWRQTNER_					0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.29996705835	2	616.299967	1230.58538	0.925	0.00057008	-3.1457	-0.0019387	-2.2207	-0.0013686	616.2988028255397	29.57	0.072416	29.57	29.546	29.618	0	996	88	1.0229213	0.05289018	1.0229213	414.30722	0	21.421814						193	4	3	NaN	NaN	NaN	0.68801	1	17266	17266		0.23014	0	1	14276	+		18624	10642	10666	11005	14806	14806					-0.02068809184447673
NQWRQTNER	9	Unmodified						0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.299967	1230.58538	0.925	0.00057008	-3.1457	-0.0019387	-2.2207	-0.0013686	616.2988028255397	29.57	0.072416	29.57	29.546	29.618	0	996	88	1.0229213	0.05289018	1.0229213	414.30722		21.421814	0.0039531	-0.0010911	-0.0010652	NaN	0.23014	193	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14276	+		18625	10642	10666	11005							-0.02068809184447673
NQWRQTNER	9	Unmodified						0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.299967	1230.58538	0.60155	0.00037074	-1.5265	-0.0009408	-0.92497	-0.00057006	616.2991096621731	29.569	0.12061	29.562	29.514	29.635	-0.0070667	990	106	1.0265712	0.06383312	1.0250517	415.78546		25.853912	-0.0039531	0.00090468	0.0010652	NaN	0.23014	262	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18575	+		18626	10642	10666	11005							-0.02068809184447673
NQYVMHIA	8	Unmodified	_NQYVMHIA_					0	0	0			REV__ENST00000549060.1_1_2:144464133-144525738:+|nuORF	REV__ENST00000549060.1_1_2:144464133-144525738:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4716628028	1	975.471663	974.464386	2.2704	0.0022147	-10.708	-0.010445	-8.4378	-0.0082308	975.4613307487951	29.811	0.024126	29.811	29.811	29.836	0	261	37	1.4642475	0.021336913	1.4642475	297.3946	0	4.333618						38	2	2	NaN	NaN	NaN	0.80692	1	7730	7730		8.2903	2.8244	1	2036.5	+		18627	8616	10667	11006	14807	14807					-0.023867281514640126
NRAHVNAHH	9	Unmodified	_NRAHVNAHH_					0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2657303105001	2	528.26573	1054.51691	1.7852	0.00094307	-6.5787	-0.0034753	-4.7935	-0.0025322	528.262008557681	17.213	0.19182	17.213	17.165	17.357	0	1263	76	0.85970795	0.04608953	0.85970795	348.84613	0	18.701874						220	9	2	NaN	NaN	NaN	0.47587	1	10832	10832		10.605	0.5534	1	20391	+		18628	10575	10668	11007	14808	14808					-0.008170089736267983
NRAHVNAHH	9	Unmodified						0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.26573	1054.51691	1.7852	0.00094307	-6.5787	-0.0034753	-4.7935	-0.0025322	528.262008557681	17.213	0.19182	17.213	17.165	17.357	0	1263	76	0.85970795	0.04608953	0.85970795	348.84613		18.701874	-0.015478	0.00071018	0.00075972	NaN	10.605	220	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20391	+		18629	10575	10668	11007							-0.008170089736267983
NRAHVNAHH	9	Unmodified						0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.26573	1054.51691	1.3966	0.00073775	-8.0161	-0.0042346	-6.6195	-0.0034969	528.2612328368557	17.258	0.19186	17.244	17.172	17.364	-0.013567	1263	70	0.85970795	0.042402327	0.8581885	348.84613		17.205719	0.015478	-0.00080849	-0.00075972	NaN	10.605	203	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20388	+		18630	10575	10668	11007							-0.008170089736267983
NRERWFEI	8	Unmodified	_NRERWFEI_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2936220827002	2	575.293622	1148.57269	1.5611	0.00089809	-2.8126	-0.0016181	-1.2515	-0.00071999	575.2931541167943	25.298	0.14472	25.286	25.214	25.358	-0.012011	1215	70	0.8891654	0.042297065	0.88764596	360.41803	0	17.144867						202	7	3	NaN	NaN	NaN	0.78546	1	14259	14259		10.605	0	1	26668	+		18631	8318	10669	11008	14809	14809					0.004347794233353852
NRHAKQSPHYM	11	Unmodified	_NRHAKQSPHYM_					0	0	0			REV__ENST00000393627.6_1_3:121822569-121822680:+|nuORF	REV__ENST00000393627.6_1_3:121822569-121822680:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.8331197714501	2	684.83312	1367.65169	1.8517	0.0012681	-3.9573	-0.0027101	-2.1056	-0.001442	684.8302539924504	22.476	0.072325	22.462	22.438	22.511	-0.013733	1113	34	0.9515937	0.020159304	0.95007426	384.98907	0	8.155884						46	4	2	NaN	NaN	NaN	0.74794	1	18845	18845		4.3102	0	1	4974.9	+		18632	11988	10670	11009	14810	14810					-0.017433166140335743
NRICFKFDHL	10	Unmodified	_NRICFKFDHL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8320571389501	2	646.832057	1291.64956	2.1408	0.0013847	-9.9999	-0.0064682	-7.8591	-0.0050835	646.8269065985212	17.546	0.072001	17.532	17.508	17.58	-0.013567	1182	58	0.9093879	0.034895778	0.90786844	368.13028	0	14.12619						85	4	2	NaN	NaN	NaN	0.76548	1	17788	17788		3.5698	1.4672	1	8343.9			18633	5832	10671	11010	14811	14811					0.015402546481482204
NRKVKPHV	8	Unmodified	_NRKVKPHV_					0	0	0			REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.30379283850004	2	489.303793	976.593033	1.9657	0.00096181	1.6763	0.00082023	3.642	0.001782	489.304756623836	19.78	0.072062	19.78	19.756	19.828	0	1437	40	0.7524962	0.024107158	0.7524962	305.6563	0	9.792053						63	4	2	NaN	NaN	NaN	0.84887	1	7802	7802		0.32989	0	1	5610.7	+		18634	9685	10672	11011	14812	14812					0.10379994873801479
NRKVKPHV	8	Unmodified						0	0	0			REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	489.303793	976.593033	1.9657	0.00096181	1.6763	0.00082023	3.642	0.001782	489.304756623836	19.78	0.072062	19.78	19.756	19.828	0	1437	40	0.7524962	0.024107158	0.7524962	305.6563		9.792053	-0.052631	-0.00012656	0.00075972	NaN	0.32989	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5610.7	+		18635	9685	10672	11011							0.10379994873801479
NRKVKPHV	8	Unmodified						0	0	0			REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	REV__nc|ENSG00000137501|Q9HCH5-11|SYTL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	489.303793	976.593033	1.8319	0.00089636	1.975	0.00096639	3.8069	0.0018627	489.30496982086447	19.9	0.048063	19.885	19.837	19.885	-0.014141	1437	34	0.7524962	0.020398319	0.75097674	305.6563		8.2855835	0.052631	0.00016576	-0.00075972	NaN	0.32989	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3974	+		18636	9685	10672	11011							0.10379994873801479
NRLDQYEI	8	Unmodified	_NRLDQYEI_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5214497668999	1	1050.52145	1049.51417	1.9357	0.0020335	-11.755	-0.012349	-9.8192	-0.010315	1050.5080704613538	24.164	0.12069	24.164	24.14	24.261	0	192	49	1.5050892	0.028370976	1.5050892	305.3847	0	5.7565002						94	6	2	NaN	NaN	NaN	0.10172	1	10605	10605		63.958	2.9766	1	8355.2			18637	3591	10673	11012	14813	14813					-0.008603219418091612
NRNKNRYGN	9	Unmodified	_NRNKNRYGN_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2894023720501	2	568.289402	1134.56425	1.5735	0.00089419	-0.90597	-0.00051486	0.6675	0.00037933	568.2888812806902	21.151	0.12049	21.151	21.103	21.224	0	1218	79	0.8873258	0.047873557	0.8873258	359.72504	0	19.408112						166	6	2	NaN	NaN	NaN	0.55027	1	14264	14264		7.5404	0.55601	1	26177			18638	5596	10674	11013	14814	14814					0.0023522550670804776
NRPGAGAG	8	Unmodified	_NRPGAGAG_					0	0	0		ENST00000252485.8_1_19:45349622-45368699:+|nuORF	ENST00000252485.8_1_19:45349622-45368699:+|nuORF	ENST00000252485.8_1_19:45349622-45368699:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3532622266001	1	699.353262	698.345986	0.60358	0.00042212	5.2547	0.0036749	5.8583	0.004097	699.3568452388743	41.376	0.096325	41.384	41.384	41.481	0.0082588	705	55	1.1990347	0.032507658	1.1975152	244.86711	0	6.6387177						98	5	2	NaN	NaN	NaN	0.84887	1	3125	3125		0.32989	0	1	7989.1			18639	6279	10675	11014	14815	14815					-0.015253393449484065
NRPRLRRKR	9	Unmodified	_NRPRLRRKR_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7981145907	1	1251.79811	1250.79084	1.8839	0.0023582	-9.6779	-0.012115	-7.794	-0.0097566	1251.7849958059899	41.065	0.096119	41.065	41.065	41.161	0	786	94	1.1501974	0.056120634	1.1501974	232.88882	0	11.363129						196	5	2	NaN	NaN	NaN	0.68801	1	17801	17801		0.23014	0.037651	1	14185			18640	812	10676	11015	14816	14816					0.17547433856293537
NRPRLRRKR	9	Unmodified	_NRPRLRRKR_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7981145907	1	1251.79811	1250.79084	1.7203	0.0021535	-11.006	-0.013778	-9.2859	-0.011624	1251.785043829733	39.668	0.21693	39.673	39.625	39.842	0.0053368	69	106	1.5776473	0.06183505	1.5761279	319.4377	0	12.520172						354	10	2	NaN	NaN	NaN	0.66196	1	17043	17043		2.4615	0.28518	1	158470			18641	812	10676	11015	14817	14817					0.17547433856293537
NRPRLRRKR	9	Unmodified	_NRPRLRRKR_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7981145907	1	1251.79811	1250.79084	1.3561	0.0016975	-9.9363	-0.012438	-8.5802	-0.010741	1251.7864341746388	40.535	0.12016	40.541	40.517	40.637	0.0067596	756	121	1.1683017	0.07246411	1.1667823	236.55455	0	14.672333						184	6	2	NaN	NaN	NaN	0.68801	1	17044	17044		0.23014	0.037651	1	11024			18642	812	10676	11015	14818	14818					0.17547433856293537
NRPRLRRKR	9	Unmodified	_NRPRLRRKR_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7981145907	1	1251.79811	1250.79084	1.9292	0.0024149	-7.5613	-0.0094652	-5.6321	-0.0070503	1251.7909870962592	39.066	0.3856	39.071	39.023	39.408	0.0046806	105	139	1.5564433	0.08130765	1.5549239	315.1444	0	16.462952						1118	17	4	NaN	NaN	NaN	0.66196	1	17047	17047		2.4615	0.28518	1	220100			18643	812	10676	11015	14819	14819					0.17547433856293537
NRPSFRQI	8	Unmodified	_NRPSFRQI_					0	0	0		MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.5588383262001	1	1017.55884	1016.55156	1.0018	0.0010194	1.0717	0.0010905	2.0735	0.0021099	1017.5608014082413	31.669	0.16896	31.664	31.64	31.809	-0.0044155	186	64	1.5086359	0.03724277	1.5071164	306.23306	0	7.559784						172	8	3	NaN	NaN	NaN	0.78967	1	9069	9069		10.605	1.643	1	15266			18644	3226	10677	11016	14820	14820					0.043948141144596775
NRSGGGGY	8	Unmodified	_NRSGGGGY_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.3430914708001	1	767.343091	766.335815	0.96196	0.00073815	1.1833	0.000908	2.1453	0.0016461	767.3436434006369	39.791	0.36135	39.791	39.694	40.056	0	663	49	1.2243022	0.028852463	1.2243022	249.6003	0	5.882187						326	16	3	NaN	NaN	NaN	0.84887	1	4300	4300		0.32989	0	1	49250			18645	1526	10678	11017	14821	14821					-0.05669947070180115
NRSGGGGY	8	Unmodified						0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.343091	766.335815	1.3299	0.0010205	0.059669	4.5786E-05	1.3896	0.0010663	767.3430521038914	39.837	0.16881	39.843	39.819	39.988	0.0060463	660	40	1.2261056	0.023443818	1.2245861	249.96796		4.779541	0.026119	-0.00034976	0.00014197	NaN	0.32989	168	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27337			18646	1526	10678	11017							-0.05669947070180115
NRSNVGELL	9	Unmodified	_NRSNVGELL_					0	0	0		ENST00000586602.5_1_19:9677367-9677442:-|nuORF	ENST00000586602.5_1_19:9677367-9677442:-|nuORF	ENST00000586602.5_1_19:9677367-9677442:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.27235532435003	2	501.272355	1000.53016	0.95754	0.00047999	-5.2064	-0.0026098	-4.2489	-0.0021298	501.27008715497925	31.114	0.1448	31.109	31.06	31.205	-0.0050716	1314	82	0.8283535	0.049825132	0.8268341	336.35703	0	20.23175						272	7	4	NaN	NaN	NaN	0.14787	1	8450	8450		28.896	5.0451	1	36329			18647	7703	10679	11018	14822	14822					0.02991384295091848
NRVICRYF	8	Unmodified	_NRVICRYF_					0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7818359759001	2	535.781836	1069.54912	1.3464	0.00072138	-3.7554	-0.0020121	-2.409	-0.0012907	536.2811220111537	34.999	0.072342	34.999	34.975	35.048	0	1254	37	0.8652351	0.022102654	0.8652351	351.02527	0	8.9670105						54	4	2	NaN	NaN	NaN	0.84455	1	11545	11545		2.7852	0.60885	1	3065.6	+		18648	8562	10680	11019	14823	14823					0.0171264238515505
NRVICRYF	8	Unmodified						0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.781836	1069.54912	1.3464	0.00072138	-3.7554	-0.0020121	-2.409	-0.0012907	536.2811220111537	34.999	0.072342	34.999	34.975	35.048	0	1254	37	0.8652351	0.022102654	0.8652351	351.02527		8.9670105	0	0	0	NaN	2.7852	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3065.6	+		18649	8562	10680	11019							0.0171264238515505
NSARLSQNHPL	11	Unmodified	_NSARLSQNHPL_					0	0	0			REV__ENSG00000175489|ENST00000339007|LRRC25	REV__ENSG00000175489|ENST00000339007|LRRC25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.8258176681002	2	618.825818	1235.63708	1.8222	0.0011276	-7.7676	-0.0048068	-5.9454	-0.0036791	619.3213383567777	18.7	0.095955	18.7	18.676	18.772	0	1140	34	0.93509084	0.02018106	0.93509084	378.71664	0	8.173431						75	5	3	NaN	NaN	NaN	0.6875	1	17422	17422		8.2775	0.68994	1	5337.2	+		18650	10728	10681	11020	14824	14824					0.028689345094790042
NSDPYSVAL	9	Unmodified	_NSDPYSVAL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4574525266002	1	965.457453	964.450176	1.5318	0.0014789	-0.52993	-0.00051162	1.0019	0.00096731	965.4557627060374	23.995	0.12059	23.995	23.971	24.092	0	321	67	1.4286518	0.03918445	1.4286518	290.2069	0	7.959656						161	6	2	NaN	NaN	NaN	0.084037	1	7459	7459		38.131	8.5325	1	17896			18651	4380	10682	11021	14825	14825					-0.03347102098746291
NSDPYSVAL	9	Unmodified	_NSDPYSVAL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4574525266002	1	965.457453	964.450176	1.4425	0.0013926	0.46471	0.00044866	1.9072	0.0018413	965.4574217082402	24.019	0.12061	24.006	23.958	24.079	-0.012747	318	70	1.4304334	0.04096341	1.428914	290.56882	0	8.321014						157	6	2	NaN	NaN	NaN	0.04743	1	7308	7308		48.002	21.887	1	16279			18652	4380	10682	11021	14826	14826					-0.03347102098746291
NSEPHIVF	8	Unmodified	_NSEPHIVF_					0	0	0			REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.73761705	2	471.737617	941.460681	1.1061	0.00052179	-0.23956	-0.00011301	0.86654	0.00040878	471.7375380171361	20.429	0.19226	20.429	20.357	20.549	0	1365	52	0.7969414	0.03144282	0.7969414	323.8772	0	12.778351						219	9	3	NaN	NaN	NaN	0.50906	1	6842	6842		30.61	10.161	1	30850	+		18653	11078	10683	11022	14827	14827					-0.012390746536766528
NSEPHIVF	8	Unmodified						0	0	0			REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	471.737617	941.460681	1.1061	0.00052179	-0.23956	-0.00011301	0.86654	0.00040878	471.7375380171361	20.429	0.19226	20.429	20.357	20.549	0	1365	52	0.7969414	0.03144282	0.7969414	323.8772		12.778351	-0.0050245	-0.00095528	0.00075972	NaN	30.61	219	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30850	+		18654	11078	10683	11022							-0.012390746536766528
NSFRYNGLIHR	11	Unmodified	_NSFRYNGLIHR_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.57758181596665	3	459.577582	1375.71092	1.1353	0.00052175	-2.4708	-0.0011355	-1.3355	-0.00061379	459.5761550995223	16.014	0.095984	16.014	15.99	16.086	0	1455	34	0.7413668	0.02041161	0.7413668	449.87576	0	12.386169						71	5	2	NaN	NaN	NaN	0.72321	1	19859	19859		5.9336	4.0834	1	7289.2			18655	1668	10684	11023	14828	14828					0.03808902671789838
NSGGLSHAPF	10	Unmodified	_NSGGLSHAPF_					0	0	0			REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.73814836625	2	493.738148	985.461744	0.68857	0.00033997	-6.7469	-0.0033312	-6.0583	-0.0029912	493.7352256351306	29.038	0.14478	29.031	28.982	29.127	-0.0077229	1326	46	0.8209676	0.027707577	0.81944823	333.4271	0	11.253143						174	7	3	NaN	NaN	NaN	0.73444	1	7881	7881		5.6942	0.2283	1	16175	+		18656	12739	10685	11024	14829	14829					-0.03156860284764207
NSGGLSHAPF	10	Unmodified						0	0	0			REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	493.738148	985.461744	1.461	0.00072136	-8.7563	-0.0043233	-7.2953	-0.003602	493.7339843398579	29.063	0.19311	29.063	28.991	29.184	0	1329	46	0.81912065	0.027710617	0.81912065	332.67697		11.254364	0.016326	-0.00086052	-0.00016377	NaN	5.6942	135	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11367	+		18657	12739	10685	11024							-0.03156860284764207
NSGGLSHAPF	10	Unmodified						0	0	0			REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	REV__ENST00000550730.1_1_12:57024629-57030521:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.738148	985.461744	0.68857	0.00033997	-6.7469	-0.0033312	-6.0583	-0.0029912	493.7352256351306	29.038	0.14478	29.031	28.982	29.127	-0.0077229	1326	46	0.8209676	0.027707577	0.81944823	333.4271		11.253143	-0.016326	0.0011237	0.00016377	NaN	5.6942	174	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16175	+		18658	12739	10685	11024							-0.03156860284764207
NSGPPLML	8	Unmodified	_NSGPPLML_					0	0	0			REV__ENST00000497446.5_1_7:107332392-107334073:+|nuORF	REV__ENST00000497446.5_1_7:107332392-107334073:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.4284010046	1	828.428401	827.421125	1.9496	0.0016151	0.45977	0.00038089	2.4094	0.001996	828.4287841084417	34.469	0.21716	34.469	34.421	34.638	0	426	94	1.3661768	0.055476546	1.3661768	278.1626	0	11.29538						311	10	3	NaN	NaN	NaN	0.77489	1	5115	5115		12.588	0	1	49779	+		18659	12358	10686	11025	14830	14830					0.000510820712520399
NSGTGAIL	8	Unmodified	_NSGTGAIL_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.3886446799	1	732.388645	731.381368	1.4409	0.0010553	4.8967	0.0035863	6.3376	0.0046416	732.3922969915371	29.569	0.43431	29.562	29.417	29.852	-0.0070667	594	124	1.265731	0.07383573	1.2642115	258.26324	0	15.065643						746	19	3	NaN	NaN	NaN	0.78264	1	3698	3698		11.548	0	1	172500	+		18660	10129	10687	11026	14831	14831					0.00493278392184493
NSISSVVSR	9	Unmodified	_NSISSVVSR_					0	0	0		nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.7590807736001	2	474.759081	947.503609	1.4112	0.00066998	-1.2463	-0.00059168	0.16493	7.8303E-05	474.75822480242823	15.462	0.048079	15.462	15.414	15.462	0	1341	34	0.8117308	0.020325482	0.8117308	329.85733	0	8.259552						58	3	2	NaN	NaN	NaN	0.19455	1	7024	7024		25.681	8.8231	1	7627.1			18661	5656	10688	11027	14832	14832					0.027756954037727155
NSISSVVSR	9	Unmodified	_NSISSVVSR_					0	0	0		nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-4|DAPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.7590807736001	2	474.759081	947.503609	1.0355	0.00049163	-0.039044	-1.8537E-05	0.9965	0.0004731	474.7594083394246	15.46	0.16789	15.448	15.4	15.568	-0.012202	1341	37	0.8117308	0.022172093	0.81021136	329.85733	0	9.009918						124	8	2	NaN	NaN	NaN	0.13196	1	6893	6893		31.198	5.5167	1	14105			18662	5656	10688	11027	14833	14833					0.027756954037727155
NSKIKYWH	8	Unmodified	_NSKIKYWH_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2878084233	2	538.287808	1074.56106	1.4923	0.00080331	-4.4279	-0.0023835	-2.9356	-0.0015802	538.2854089038707	21.609	0.048288	21.595	21.547	21.595	-0.013897	1113	85	0.9515937	0.051284134	0.95007426	386.038	0	20.804718						104	3	2	NaN	NaN	NaN	0.84887	1	11448	11448		0.32989	0	1	7992.7			18663	1932	10689	11028	14834	14834					0.026765823999767235
NSKISFFH	8	Unmodified	_NSKISFFH_					0	0	0		ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.2534342897	2	490.253434	978.492316	1.4089	0.00069074	3.5174	0.0017244	4.9263	0.0024152	490.2555894681432	26.915	0.096531	26.915	26.843	26.94	0	1347	55	0.8080346	0.03325814	0.8080346	328.2066	0	13.508728						82	5	2	NaN	NaN	NaN	0.80071	1	7842	7842		9.1232	0.83292	1	6770.8			18664	6620	10690	11029	14835	14835					0.002209181002854166
NSKISFFH	8	Unmodified						0	0	0		ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.253434	978.492316	1.1336	0.00055577	2.903	0.0014232	4.0366	0.0019789	490.25510874207356	26.915	0.096529	26.904	26.856	26.952	-0.010645	1344	31	0.8098828	0.018482745	0.8083634	328.9573		7.5072937	-0.0057333	-0.00030742	0.00016437	NaN	9.1232	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5852.6			18665	6620	10690	11029							0.002209181002854166
NSLGLNWTKE	10	Unmodified	_NSLGLNWTKE_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2985700748501	2	581.29857	1160.58259	1.6986	0.0009874	-3.516	-0.0020439	-1.8174	-0.0010565	581.2965292144089	15.101	0.19219	15.101	14.981	15.174	0	1242	46	0.87260187	0.027623832	0.87260187	353.66068	0	11.195801						141	9	3	NaN	NaN	NaN	0.34693	1	15169	15169		25.801	5.1133	1	12386	+		18666	11129	10691	11030	14836	14836					0.00871922638043543
NSLGLNWTKE	10	Unmodified						0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.29857	1160.58259	1.6986	0.0009874	-3.516	-0.0020439	-1.8174	-0.0010565	581.2965292144089	15.101	0.19219	15.101	14.981	15.174	0	1242	46	0.87260187	0.027623832	0.87260187	353.66068		11.195801	-0.0054417	0.0011327	0.00075972	NaN	25.801	141	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12386	+		18667	11129	10691	11030							0.00871922638043543
NSLGVVPYL	9	Unmodified	_NSLGVVPYL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.27129269184996	2	481.271293	960.528032	1.8225	0.00087713	-2.7742	-0.0013351	-0.95168	-0.00045801	481.26990580295535	21.946	0.096395	21.946	21.898	21.994	0	1323	91	0.8228144	0.05537027	0.8228144	334.29648	0	22.496094						178	5	3	NaN	NaN	NaN	0.084037	1	7346	7346		38.131	0	1	20684			18668	593	10692	11031	14837	14837					0.04618955557270965
NSLLEILVL	9	Unmodified	_NSLLEILVL_					0	0	0		ENST00000297071.8_1_7:23544430-23544526:-|nuORF	ENST00000297071.8_1_7:23544430-23544526:-|nuORF	ENST00000297071.8_1_7:23544430-23544526:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.6241239244001	1	1013.62412	1012.61685	1.0135	0.0010273	0.10741	0.00010887	1.1209	0.0011362	1013.6242585826596	33.406	0.096527	33.404	33.356	33.452	-0.0018501	114	55	1.5511382	0.031842947	1.5496187	314.87683	0	6.4640503						158	5	3	NaN	NaN	NaN	0.054111	1	8921	8921		45.165	0	1	20119			18669	6401	10693	11032	14838	14838					0.11104370796954299
NSNAVISK	8	Unmodified	_NSNAVISK_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4523075692002	1	832.452308	831.445031	0.27621	0.00022993	8.8106	0.0073344	9.0868	0.0075643	832.4597089612196	56.371	0.047947	56.37	56.346	56.394	-0.00056458	372	37	1.3983358	0.021421194	1.3968164	284.68784	0	4.361145						44	3	2	NaN	NaN	NaN	0.84512	1	5041	5041		2.4615	0	1	3034.4	+		18670	10361	10694	11033	14839	14839					0.02256638829305757
NSNAVISK	8	Unmodified						0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.452308	831.445031	2.1411	0.0017824	5.2666	0.0043842	7.4077	0.0061666	832.4550069020578	56.373	0.024017	56.373	56.349	56.373	0	378	40	1.3947657	0.02320242	1.3947657	283.961		4.7237854	0.001275	-0.0019152	-0.0010254	NaN	2.4615	36	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2446.1	+		18671	10361	10694	11033							0.02256638829305757
NSNAVISK	8	Unmodified						0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.452308	831.445031	0.27621	0.00022993	8.8106	0.0073344	9.0868	0.0075643	832.4597089612196	56.371	0.047947	56.37	56.346	56.394	-0.00056458	372	37	1.3983358	0.021421194	1.3968164	284.68784		4.361145	-0.001275	0.001035	0.0010254	NaN	2.4615	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3034.4	+		18672	10361	10694	11033							0.02256638829305757
NSNELDKQM	9	Unmodified	_NSNELDKQM_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7453130838501	2	539.745313	1077.47607	2.195	0.0011847	2.4362	0.0013149	4.6312	0.0024997	539.7468204741366	25.853	0.096542	25.841	25.817	25.914	-0.0116	1284	43	0.8468043	0.025817096	0.8452849	343.51575	0	10.472992						100	5	4	NaN	NaN	NaN	0.5168	1	11542	11542		8.9191	2.6689	1	7126.3	+		18673	9747	10695	11034	14840	14840					-0.059565759187762524
NSNELDKQM	9	Unmodified						0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.745313	1077.47607	2.0959	0.0011313	3.2647	0.0017621	5.3607	0.0028934	539.7474121478034	25.877	0.072371	25.877	25.829	25.901	0	1284	34	0.8468043	0.020283759	0.8468043	343.51572		8.2283325	0.017995	0.00038707	0.00075972	NaN	8.9191	96	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8425.7	+		18674	9747	10695	11034							-0.059565759187762524
NSNELDKQM	9	Unmodified						0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.745313	1077.47607	2.195	0.0011847	2.4362	0.0013149	4.6312	0.0024997	539.7468204741366	25.853	0.096542	25.841	25.817	25.914	-0.0116	1284	43	0.8468043	0.025817096	0.8452849	343.51575		10.472992	-0.017995	-0.00050731	-0.00075972	NaN	8.9191	100	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7126.3	+		18675	9747	10695	11034							-0.059565759187762524
NSNFLGLEM	9	Unmodified	_NSNFLGLEM_					0	0	0		ENST00000445995.2_1_9:98056039-98057089:+|nuORF;nc|ENSG00000166454|O43313-2|ATMIN;ENSG00000166454|ENST00000299575|ATMIN	ENST00000445995.2_1_9:98056039-98057089:+|nuORF	ENST00000445995.2_1_9:98056039-98057089:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7420421134001	2	512.742042	1023.46953	1.8459	0.00094645	3.1524	0.0016164	4.9983	0.0025628	512.7442395194032	24.285	0.072412	24.272	24.224	24.296	-0.012749	1323	40	0.8228144	0.02400285	0.82129496	334.0062	0	9.7435						41	4	2	NaN	NaN	NaN	0.38313	1	9299	9299		14.425	4.679	1	3377.4			18676	4484	10696	11035	14841	14841					-0.041264690794946546
NSQIDEMYKEF	11	Unmodified	_NSQIDEMYKEF_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.3110171356001	2	702.311017	1402.60748	0.25281	0.00017755	1.1104	0.00077981	1.3632	0.00095736	702.3122105456966	31.62	0.1448	31.616	31.568	31.712	-0.0044155	1086	52	0.9680805	0.03112173	0.9665611	391.5615	0	12.58786						292	7	5	NaN	NaN	NaN	0.49762	1	19136	19136		18.558	8.9465	1	42957	+		18677	10707	10697	11036	14842	14842					-0.0777181034154637
NSSAAHSIG	9	Unmodified	_NSSAAHSIG_					0	0	0		nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	nc|ENSG00000069702|Q03167-2|TGFBR3	nc|ENSG00000069702|Q03167-2|TGFBR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.20139871920003	2	422.201399	842.388245	0.39376	0.00016625	-7.1254	-0.0030083	-6.7316	-0.0028421	422.19869065915816	31.934	0.14479	31.93	31.906	32.051	-0.0037613	1389	37	0.7821392	0.022212982	0.78061974	318.39883	0	9.042603						134	7	3	NaN	NaN	NaN	0.67312	1	5167	5167		1.5054	0.57954	1	16618			18678	745	10698	11037	14843	14843					-0.03925408727229751
NSSAAHSIG	9	Unmodified						0	0	0		nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	nc|ENSG00000069702|Q03167-2|TGFBR3	nc|ENSG00000069702|Q03167-2|TGFBR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	422.201399	842.388245	1.0294	0.00043463	-6.6891	-0.0028241	-5.6597	-0.0023895	422.19803816061426	31.863	0.09654	31.863	31.863	31.959	0	1380	34	0.7876915	0.020356357	0.7876915	320.65912		8.286804	-0.033789	0.00025085	0.0035359	NaN	1.5054	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4461.4			18679	745	10698	11037							-0.03925408727229751
NSSAGKNPLVC	11	Unmodified	_NSSAGKNPLVC_					0	0	0			REV__SLITRK4|p.N323Kfs*49|1|0.87|ENSG00000179542|chrX:143630140-143630141|-/T|frameshift_variant	REV__SLITRK4|p.N323Kfs*49|1|0.87|ENSG00000179542|chrX:143630140-143630141|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2714980446	2	545.271498	1088.52844	1.9497	0.0010631	-10.273	-0.0056017	-8.3235	-0.0045386	545.2660345759891	25.757	0.16888	25.757	25.684	25.853	0	1239	88	0.87444305	0.053394496	0.87444305	354.68228	0	21.657318						392	8	3	NaN	NaN	NaN	0.67707	1	12310	12310		8.962	0.67169	1	44042	+		18680	13321	10699	11038	14844	14844					-0.012279927851977845
NSSDINYQTR	10	Unmodified	_NSSDINYQTR_					0	0	0		nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	nc|ENSG00000127947|Q05209-2|PTPN12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.278365949	2	599.278366	1196.54218	0.97247	0.00058278	0.051457	3.0837E-05	1.0239	0.00061362	599.2783043472227	13.277	0.16783	13.267	13.219	13.387	-0.010098	1227	49	0.88180584	0.029444695	0.8802864	357.2648	0	11.929565						105	8	2	NaN	NaN	NaN	0.15566	1	15706	15706		39.34	8.1419	1	8537.2			18681	2548	10700	11039	14845	14845					-0.04823043752389822
NSSKDVAVM	9	Unmodified	_NSSKDVAVM_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.7342170813	2	475.734217	949.453881	1.2783	0.00060812	-1.4852	-0.00070657	-0.20695	-9.8455E-05	475.733911479896	14.501	0.21585	14.501	14.405	14.621	0	1338	40	0.81357855	0.024018466	0.81357855	330.59848	0	9.759949						246	10	3	NaN	NaN	NaN	0.054111	1	7065	7065		45.165	13.604	1	40911			18682	2315	10701	11040	14846	14846					-0.022867555965490283
NSSKDVAVM	9	Unmodified	_NSSKDVAVM_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.7342170813	2	475.734217	949.453881	0.80457	0.00038276	-0.16574	-7.8848E-05	0.63883	0.00030391	475.73397342236217	14.5	0.35938	14.489	14.393	14.752	-0.011218	1335	40	0.8154261	0.024018466	0.81390667	331.34924	0	9.759918						363	16	4	NaN	NaN	NaN	0.032689	1	6936	6936		55.592	16.674	1	49238			18683	2315	10701	11040	14847	14847					-0.022867555965490283
NSSQGFVF	8	Unmodified	_NSSQGFVF_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4101084035001	1	885.410108	884.402832	1.1389	0.0010084	5.0358	0.0044587	6.1747	0.0054671	885.4137427139557	31.139	0.0965	31.139	31.091	31.187	0	411	40	1.3751161	0.02323699	1.3751161	279.68784	0	4.726227						80	5	2	NaN	NaN	NaN	0.83913	1	5857	5857		3.9685	0	1	5324.1	+		18684	9385	10702	11041	14848	14848					-0.043993365790925054
NSSQGFVF	8	Unmodified	_NSSQGFVF_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4101084035001	1	885.410108	884.402832	1.6274	0.0014409	4.6357	0.0041045	6.2631	0.0055454	885.4140574741509	31.138	0.07239	31.133	31.084	31.157	-0.0050716	411	46	1.3751161	0.026809096	1.3735967	279.68784	0	5.452759						80	4	2	NaN	NaN	NaN	0.81756	1	5737	5737		6.8632	0.069206	1	5618.9	+		18685	9385	10702	11041	14849	14849					-0.043993365790925054
NSSQGFVF	8	Unmodified						0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	885.410108	884.402832	1.1389	0.0010084	5.0358	0.0044587	6.1747	0.0054671	885.4137427139557	31.139	0.0965	31.139	31.091	31.187	0	411	40	1.3751161	0.02323699	1.3751161	279.68784		4.726227	0.0030486	0.00016733	0.00075972	NaN	6.8632	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5324.1	+		18686	9385	10702	11041							-0.043993365790925054
NSSQGFVF	8	Unmodified						0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	885.410108	884.402832	1.6274	0.0014409	4.6357	0.0041045	6.2631	0.0055454	885.4140574741509	31.138	0.07239	31.133	31.084	31.157	-0.0050716	411	46	1.3751161	0.026809096	1.3735967	279.68784		5.452759	-0.0030486	-0.00018689	-0.00075972	NaN	6.8632	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5618.9	+		18687	9385	10702	11041							-0.043993365790925054
NSSQSAPP	8	Unmodified	_NSSQSAPP_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.1826746498	2	394.182675	786.350796	1.3485	0.00053154	-5.3316	-0.0021016	-3.9831	-0.0015701	394.18123450285316	15.534	0.047993	15.534	15.534	15.582	0	1422	67	0.7617651	0.040754676	0.7617651	310.45853	0	16.60962						105	3	3	NaN	NaN	NaN	0.84727	1	4581	4581		1.2418	0.16982	1	7490.2			18688	7939	10703	11042	14850	14850					-0.05092499992849753
NSSSSNSF	8	Unmodified	_NSSSSNSF_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.3322520130001	1	829.332252	828.324976	1.6619	0.0013783	5.3835	0.0044647	7.0454	0.005843	829.3370370142196	23.223	0.26541	23.21	23.162	23.427	-0.013294	507	49	1.3178225	0.028695583	1.316303	268.31253	0	5.8425293						227	12	3	NaN	NaN	NaN	0.65542	1	5001	5001		21.835	2.7167	1	24510	+	+	18689	8281	10704	11043	14851	14851					-0.09605394235120457
NSTEPDPLL	9	Unmodified	_NSTEPDPLL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.4836672771002	1	985.483667	984.476391	2.052	0.0020222	0.73737	0.00072667	2.7893	0.0027488	985.4837034401086	23.947	0.16883	23.947	23.899	24.068	0	270	97	1.458913	0.056916833	1.458913	296.26904	0	11.558411						442	8	4	NaN	NaN	NaN	7.355E-12	1	8025	8025		146.99	71.289	1	70016			18690	1749	10705	11044	14852	14852					-0.0164683292726977
NSTEPDPLL	9	Unmodified	_NSTEPDPLL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.4836672771002	1	985.483667	984.476391	1.8944	0.0018669	0.046972	4.629E-05	1.9414	0.0019132	985.4834655917367	23.971	0.1688	23.958	23.886	24.054	-0.01305	267	79	1.4606913	0.046249866	1.4591719	296.6302	0	9.392181						413	8	4	NaN	NaN	NaN	1.7723E-07	1	7852	7852		134.97	71.015	1	64901			18691	1749	10705	11044	14853	14853					-0.0164683292726977
NSTFSDLSEEQ	11	Unmodified	_NSTFSDLSEEQ_					0	0	0			REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.5140899565	3	419.51409	1255.52044	1.252	0.00052525	7.5555	0.0031696	8.8076	0.0036949	419.8504626233726	28.507	0.09655	28.499	28.403	28.499	-0.0083485	1491	40	0.7190863	0.024154305	0.71756685	436.7702	0	14.671204						60	5	2	NaN	NaN	NaN	0.75376	1	17134	17134		1.5256	0	1	5041.9	+		18692	9024	10706	11045	14854	14854					-0.09709893291596927
NSTRQSRMLSD	11	Unmodified	_NSTRQSRMLSD_					0	0	0			REV__ENSG00000185477|ENST00000609438|GPRIN3	REV__ENSG00000185477|ENST00000609438|GPRIN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.2104588077667	3	432.210459	1293.60955	1.3679	0.0005912	4.4731	0.0019333	5.841	0.0025245	432.21196810058046	22.429	0.048082	22.429	22.429	22.477	0	1443	40	0.7487872	0.024112344	0.7487872	454.66495	0	14.641052						81	3	3	NaN	NaN	NaN	0.71564	1	18649	18649		4.5433	0	1	6520.7	+		18693	10964	10707	11046	14855	14855					-0.0255133681305324
NSTSIEPRL	9	Unmodified	_NSTSIEPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.77218814885003	2	508.772188	1015.52982	2.2695	0.0011546	-3.384	-0.0017217	-1.1145	-0.00056705	508.77122615098637	18.053	0.19188	18.053	17.981	18.173	0	1308	49	0.83204526	0.029530823	0.83204526	337.78836	0	11.988739						219	9	3	NaN	NaN	NaN	0.29341	1	9200	9200		19.336	2.9198	1	25748			18694	164	10708	11047	14856	14856					0.022679645752418764
NSTSIEPRL	9	Unmodified	_NSTSIEPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;CHST10-MAP4K4|5|fusion;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|3|fusion	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.77218814885003	2	508.772188	1015.52982	1.7654	0.00089816	-3.1024	-0.0015784	-1.337	-0.00068023	508.7720384129511	18.074	0.21606	18.06	17.964	18.18	-0.013786	1308	52	0.83204526	0.031374753	0.8305259	337.78836	0	12.737335						242	10	3	NaN	NaN	NaN	0.25548	1	9026	9026		21.771	8.7682	1	26391			18695	164	10708	11047	14857	14857					0.022679645752418764
NSVEMDWVL	9	Oxidation (M)	_NSVEM(Oxidation (M))DWVL_		NSVEM(1)DWVL		NSVEM(84)DWVL	0	0	1		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.4979371328	1	1108.49794	1107.49066	1.0113	0.0011211	0.93761	0.0010393	1.9489	0.0021604	1108.4986691325407	28.459	0.12062	28.451	28.427	28.547	-0.0083504	138	67	1.5369828	0.03893566	1.5354633	311.64404	0	7.894745						137	6	2	NaN	NaN	NaN	0.012861	1	12787	12787		84.233	17.751	1	15685			18696	2521	10709	11048	14858	14858		293			-0.05878503770645693
NSVEMDWVL	9	Oxidation (M)						0	0	1		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1108.49794	1107.49066	1.8402	0.0020399	1.4418	0.0015982	3.282	0.0036381	1108.5004928243684	28.46	0.072422	28.46	28.436	28.508	0	138	64	1.5369828	0.03717172	1.5369828	311.64404		7.537079	0.0045127	0.00027764	0.00075972	NaN	84.233	123	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16037			18697	2521	10709	11048				293			-0.05878503770645693
NSVSELTIHG	10	Unmodified	_NSVSELTIHG_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7696454599001	2	528.769645	1055.52474	0.75415	0.00039877	3.635	0.0019221	4.3892	0.0023209	528.7719510674945	29.979	0.14477	29.973	29.901	30.045	-0.0064087	1248	40	0.8689189	0.023943245	0.86739945	352.57928	0	9.715393						136	7	3	NaN	NaN	NaN	0.5626	1	10662	10662		16.858	4.8096	1	13586	+		18698	10123	10710	11049	14859	14859					-0.0008033928738768736
NSYDVEVVL	9	Unmodified	_NSYDVEVVL_					0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5149674055	1	1037.51497	1036.50769	1.1671	0.0012109	-0.26679	-0.0002768	0.90028	0.00093405	1037.5148828639985	27.47	0.072376	27.46	27.436	27.508	-0.0095501	216	91	1.4908947	0.053212404	1.4893752	302.55383	0	10.798645						93	4	2	NaN	NaN	NaN	0.35794	1	9851	9851		15.463	0.28729	1	9059.1			18699	3303	10711	11050	14860	14860					-0.009102598931804096
NSYDVEVVL	9	Unmodified						0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1037.51497	1036.50769	1.4193	0.0014726	0.63112	0.0006548	2.0505	0.0021274	1037.51565880149	27.471	0.04829	27.471	27.422	27.471	0	219	67	1.4891195	0.039043188	1.4891195	302.1936		7.923218	0.0051717	0.00034682	-0.00012786	NaN	15.463	85	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8331.7			18700	3303	10711	11050							-0.009102598931804096
NSYTSFDMEE	10	Unmodified	_NSYTSFDMEE_					0	0	0		RP1|p.A1433S|1|0.26|ENSG00000104237|chr8:54628179-54628179|G/T|missense_variant	RP1|p.A1433S|1|0.26|ENSG00000104237|chr8:54628179-54628179|G/T|missense_variant	RP1|p.A1433S|1|0.26|ENSG00000104237|chr8:54628179-54628179|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.7320683228501	2	611.732068	1221.44958	1.0369	0.00063429	-8.4553	-0.0051724	-7.4184	-0.0045381	612.2276297522307	28.629	0.16891	28.629	28.556	28.725	0	1242	40	0.87260187	0.023932874	0.87260187	353.45364	0	9.694183						223	8	5	NaN	NaN	NaN	0.68669	1	17008	17008		8.962	0	1	16573			18701	13664	10712	11051	14861	14861					-0.15228309600774992
NTATLTISR	9	Unmodified	_NTATLTISR_					0	0	0		nc|ENSG00000211670|A0A075B6K5|IGLV3-9;nc|ENSG00000211667|A0A075B6K2|IGLV3-12;nc|ENSG00000211662|P80748|IGLV3-21	nc|ENSG00000211670|A0A075B6K5|IGLV3-9	nc|ENSG00000211670|A0A075B6K5|IGLV3-9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.7747308378	2	488.774731	975.534909	1.8061	0.00088278	-3.0862	-0.0015085	-1.2801	-0.00062569	488.7731264204822	15.87	0.11987	15.87	15.846	15.966	0	1323	34	0.8228144	0.020314455	0.8228144	334.2239	0	8.251648						90	6	2	NaN	NaN	NaN	0.44834	1	7772	7772		11.739	2.7769	1	7615.2			18702	8025	10713	11052	14862	14862					0.046162684378600716
NTATLTISR	9	Unmodified	_NTATLTISR_					0	0	0		nc|ENSG00000211670|A0A075B6K5|IGLV3-9;nc|ENSG00000211667|A0A075B6K2|IGLV3-12;nc|ENSG00000211662|P80748|IGLV3-21	nc|ENSG00000211670|A0A075B6K5|IGLV3-9	nc|ENSG00000211670|A0A075B6K5|IGLV3-9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.7747308378	2	488.774731	975.534909	2.0172	0.00098596	-1.2634	-0.00061754	0.75376	0.00036842	488.7744982262706	15.868	0.095762	15.855	15.831	15.927	-0.012611	1326	34	0.8209676	0.020314455	0.81944823	333.47375	0	8.251678						77	5	2	NaN	NaN	NaN	0.34922	1	7618	7618		15.822	8.2816	1	8974.9			18703	8025	10713	11052	14863	14863					0.046162684378600716
NTDEMVEL	8	Unmodified	_NTDEMVEL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;ENST00000483135.1_1_9:86591819-86593167:-|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4135388014	1	950.413539	949.406262	1.7751	0.0016871	-0.17691	-0.00016814	1.5982	0.0015189	950.4136848492782	23.778	0.14453	23.778	23.73	23.875	0	330	70	1.4233059	0.041006923	1.4233059	289.18552	0	8.331726						143	7	2	NaN	NaN	NaN	0.16655	1	7057	7057		52.624	5.4883	1	15371			18704	4377	10714	11053	14864	14864					-0.07046454587396056
NTDEPPMVF	9	Unmodified	_NTDEPPMVF_					0	0	0		USP14-THOC1|2|fusion;USP14-THOC1|1|fusion;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	USP14-THOC1|2|fusion	USP14-THOC1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.4608233449999	1	1049.46082	1048.45355	1.9551	0.0020518	-0.69193	-0.00072616	1.2631	0.0013256	1049.460284402212	26.819	0.21767	26.819	26.746	26.964	0	237	70	1.4784646	0.0408417	1.4784646	299.98645	0	8.286926						369	10	4	NaN	NaN	NaN	0.03618	1	10555	10555		52.78	28.218	1	42536			18705	1336	10715	11054	14865	14865					-0.06874175316420406
NTDEPPMVF	9	Unmodified	_NTDEPPMVF_					0	0	0		USP14-THOC1|2|fusion;USP14-THOC1|1|fusion;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	USP14-THOC1|2|fusion	USP14-THOC1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.4608233449999	1	1049.46082	1048.45355	1.3481	0.0014148	-0.22969	-0.00024105	1.1184	0.0011738	1049.4618873715115	26.842	0.21722	26.832	26.735	26.952	-0.010645	237	73	1.4784646	0.042619705	1.4769452	299.98645	0	8.647705						350	10	3	NaN	NaN	NaN	0.030696	1	10337	10337		58.2	35.082	1	41242			18706	1336	10715	11054	14866	14866					-0.06874175316420406
NTDEPPMVF	9	Oxidation (M)	_NTDEPPM(Oxidation (M))VF_		NTDEPPM(1)VF		NTDEPPM(48)VF	0	0	1		USP14-THOC1|2|fusion;USP14-THOC1|1|fusion;nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	USP14-THOC1|2|fusion	USP14-THOC1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4557379670998	1	1065.45574	1064.44846	2.2122	0.002357	-0.25653	-0.00027332	1.9556	0.0020836	1065.4556651639805	23.248	0.12051	23.248	23.152	23.272	0	213	70	1.4926696	0.040828705	1.4926696	302.8096	0	8.282715						175	6	2	NaN	NaN	NaN	0.04743	1	11308	11308		48.002	26.231	1	16219			18707	1336	10715	11055	14867	14867		147			-0.08118479179029237
NTDGAVNF	8	Unmodified	_NTDGAVNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.3737228972001	1	837.373723	836.366446	1.9098	0.0015992	-0.2578	-0.00021588	1.652	0.0013833	837.3728973690132	19.612	0.096041	19.612	19.612	19.708	0	540	37	1.2980826	0.021544695	1.2980826	264.25198	0	4.385895						73	5	2	NaN	NaN	NaN	0.23625	1	5214	5214		47.136	16.526	1	6187.2			18708	3433	10716	11056	14868	14868					-0.058282134757973836
NTDGAVNF	8	Unmodified	_NTDGAVNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.3737228972001	1	837.373723	836.366446	1.9041	0.0015944	1.0178	0.00085229	2.9219	0.0024467	837.3737868320982	19.564	0.047998	19.564	19.516	19.564	0	537	37	1.2998781	0.02154243	1.2998781	264.6175	0	4.385437						56	3	2	NaN	NaN	NaN	0.23186	1	5215	5215		47.482	10.895	1	5039			18709	3433	10716	11056	14869	14869					-0.058282134757973836
NTDMDTIKA	9	Unmodified	_NTDMDTIKA_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.7369567355	2	504.736957	1007.45936	0.82657	0.0004172	-1.9966	-0.0010078	-1.1701	-0.00059058	505.23743137337595	31.331	0.072372	31.326	31.302	31.374	-0.0050716	1341	49	0.8117308	0.029559612	0.81021136	329.5765	0	12.001709						128	4	3	NaN	NaN	NaN	0.27608	1	8697	8697		20.449	7.4458	1	9876.1	+		18710	10837	10717	11057	14870	14870					-0.04407076804739063
NTDMDTIKA	9	Unmodified						0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	504.736957	1007.45936	0.76907	0.00038818	-2.4684	-0.0012459	-1.6993	-0.00085772	505.23780703712885	31.356	0.072412	31.356	31.308	31.38	0	1341	46	0.8117308	0.027713597	0.8117308	329.5765		11.252197	0.015098	-0.00023084	0.00075972	NaN	20.449	115	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9697.5	+		18711	10837	10717	11057							-0.04407076804739063
NTDMDTIKA	9	Unmodified						0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.736957	1007.45936	0.82657	0.0004172	-1.9966	-0.0010078	-1.1701	-0.00059058	505.23743137337595	31.331	0.072372	31.326	31.302	31.374	-0.0050716	1341	49	0.8117308	0.029559612	0.81021136	329.5765		12.001709	-0.015098	0.00024539	-0.00075972	NaN	20.449	128	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9876.1	+		18712	10837	10717	11057							-0.04407076804739063
NTEPGAESSE	10	Unmodified	_NTEPGAESSE_					0	0	0		nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3	nc|ENSG00000280987|P43243-2|MATR3	nc|ENSG00000280987|P43243-2|MATR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.7094505063	2	510.709451	1019.40435	1.803	0.00092082	-1.7326	-0.00088486	0.070423	3.5966E-05	510.7095416325644	18.338	0.12012	18.324	18.3	18.42	-0.01395	1335	52	0.8154261	0.031401932	0.81390667	331.0246	0	12.747711						207	6	3	NaN	NaN	NaN	0.66626	1	9143	9143		10.36	2.7726	1	22832			18713	442	10718	11058	14871	14871					-0.10457792071645144
NTESTRIMTKL	11	Unmodified	_NTESTRIMTKL_					0	0	0		ENST00000482958.1_1_3:165491172-165545790:-|nuORF;ENSG00000114200|ENST00000264381|BCHE	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.34519430395	2	647.345194	1292.67584	2.3545	0.0015242	-5.1817	-0.0033544	-2.8273	-0.0018302	647.3418631618538	25.781	0.12066	25.781	25.757	25.877	0	1113	157	0.9515937	0.09518057	0.9515937	385.21243	0	38.529816						352	6	5	NaN	NaN	NaN	0.00018362	1	18633	18633		83.13	32.815	1	86202			18714	1946	10719	11059	14872	14872					0.04120479028961199
NTESTRIMTKL	11	Unmodified	_NTESTRIMTKL_					0	0	0		ENST00000482958.1_1_3:165491172-165545790:-|nuORF;ENSG00000114200|ENST00000264381|BCHE	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	ENST00000482958.1_1_3:165491172-165545790:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.34519430395	2	647.345194	1292.67584	2.3518	0.0015225	-4.6397	-0.0030035	-2.2878	-0.001481	647.342484227469	25.78	0.14479	25.769	25.721	25.865	-0.0116	1113	157	0.9515937	0.09517026	0.95007426	385.21243	0	38.525635						461	7	5	NaN	NaN	NaN	0.13233	1	17799	17799		36.622	0	1	96037			18715	1946	10719	11059	14873	14873					0.04120479028961199
NTFDFIKVLR	10	Unmodified	_NTFDFIKVLR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.856055164	2	626.856055	1251.69756	1.9944	0.0012502	-3.4661	-0.0021728	-1.4717	-0.00092254	626.8540393702018	25.95	0.096512	25.95	25.926	26.022	0	1113	37	0.9515937	0.021995485	0.9515937	385.34573	0	8.907013						106	5	3	NaN	NaN	NaN	0.31897	1	17822	17822		26.96	21.266	1	15412			18716	3460	10720	11060	14874	14874					0.08177651839832834
NTFDFIKVLR	10	Unmodified	_NTFDFIKVLR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.2397955982	3	418.239796	1251.69756	2.018	0.00084399	-3.1622	-0.0013225	-1.1442	-0.00047855	418.2385555747683	25.974	0.072388	25.974	25.926	25.998	0	1365	37	0.7969414	0.022196114	0.7969414	484.0752	0	13.482269						58	4	2	NaN	NaN	NaN	0.37681	1	17823	17823		19.592	15.997	1	5595.3			18717	3460	10720	11060	14875	14875					0.08177651839832834
NTFDFIKVLR	10	Unmodified	_NTFDFIKVLR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.856055164	2	626.856055	1251.69756	1.8334	0.0011493	-0.80664	-0.00050565	1.0268	0.00064366	626.8556569043461	26.022	0.16895	26.011	25.962	26.131	-0.011135	1116	40	0.94976085	0.023824632	0.9482414	384.60352	0	9.647736						129	8	3	NaN	NaN	NaN	0.013678	1	17059	17059		66.544	53.541	1	16418			18718	3460	10720	11060	14876	14876					0.08177651839832834
NTFEFAKPVQR	11	Unmodified	_NTFEFAKPVQR_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.8540437913	2	668.854044	1335.69353	2.0401	0.0013645	-0.98167	-0.00065659	1.0584	0.00070793	668.8524178938566	17.309	0.047867	17.309	17.285	17.333	0	1104	28	0.9570911	0.016488612	0.9570911	387.30585	0	6.672455						32	3	2	NaN	NaN	NaN	0.69656	1	19347	19347		7.6826	2.9535	1	2566.2			18719	3227	10721	11061	14877	14877					0.039115623461157156
NTFEFAKPVQR	11	Unmodified	_NTFEFAKPVQR_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.8540437913	2	668.854044	1335.69353	2.3422	0.0015666	-1.8115	-0.0012116	0.53075	0.000355	669.3544969144452	17.378	0.07201	17.364	17.316	17.388	-0.013569	1101	34	0.95892316	0.020152748	0.9574037	388.0472	0	8.155212						53	4	2	NaN	NaN	NaN	0.6011	1	18478	18478		13.949	7.5188	1	3932			18720	3227	10721	11061	14878	14878					0.039115623461157156
NTGLIQHL	8	Unmodified	_NTGLIQHL_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.4995921128001	1	895.499592	894.492316	1.2815	0.0011476	4.5962	0.0041159	5.8777	0.0052635	895.5029545019813	29.835	0.09651	29.828	29.803	29.9	-0.0070667	387	37	1.389409	0.021430135	1.3878895	282.54605	0	4.3580017						78	5	2	NaN	NaN	NaN	0.65542	1	5875	5875		21.835	0	1	6900.7			18721	5769	10722	11062	14879	14879					0.04084918100284085
NTGSNILH	8	Unmodified	_NTGSNILH_					0	0	0			REV__ENSG00000109182|ENST00000226432|CWH43	REV__ENSG00000109182|ENST00000226432|CWH43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.21959147235003	2	428.219591	854.42463	1.7864	0.00076499	0.023937	1.025E-05	1.8104	0.00077524	428.21975196955657	25.998	0.096539	25.998	25.974	26.07	0	1380	46	0.7876915	0.027758658	0.7876915	320.58673	0	11.297668						135	5	3	NaN	NaN	NaN	0.57691	1	5457	5457		26.732	2.1695	1	17799	+		18722	9054	10723	11063	14880	14880					-0.008405318305221954
NTIDQKIVER	10	Unmodified	_NTIDQKIVER_					0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3382265516001	2	608.338227	1214.6619	1.0639	0.00064723	-0.9922	-0.00060359	0.071723	4.3632E-05	608.3361445033956	14.429	0.095916	14.429	14.405	14.501	0	1155	37	0.92591566	0.022028744	0.92591566	375.07217	0	8.923462						79	5	2	NaN	NaN	NaN	0.068962	1	16853	16853		52.195	11.238	1	9028.8			18723	13712	10724	11064	14881	14881					0.0631556959219779
NTIDQKIVER	10	Unmodified	_NTIDQKIVER_					0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.89457652326666	3	405.894577	1214.6619	1.1917	0.00048372	-0.097774	-3.9686E-05	1.094	0.00044403	405.89487515164575	14.429	0.071891	14.429	14.405	14.477	0	1488	34	0.7209441	0.020436049	0.7209441	438.0586	0	12.417297						59	4	2	NaN	NaN	NaN	0.59152	1	16854	16854		15.475	10.309	1	4433.4			18724	13712	10724	11064	14882	14882					0.0631556959219779
NTIDQKIVER	10	Unmodified	_NTIDQKIVER_					0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3382265516001	2	608.338227	1214.6619	0.92796	0.00056451	-1.4361	-0.00087364	-0.50815	-0.00030913	608.337539111154	14.428	0.095817	14.417	14.393	14.489	-0.011219	1158	34	0.92408	0.020191908	0.9225606	374.32858	0	8.179413						72	5	2	NaN	NaN	NaN	0.58346	1	16186	16186		23.353	8.4988	1	8906.7			18725	13712	10724	11064	14883	14883					0.0631556959219779
NTIDQKIVER	10	Unmodified						0	0	0		TBC1D12-HELLS|1|fusion;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	405.894577	1214.6619	1.5475	0.00062813	-2.9411	-0.0011938	-1.3935	-0.00056563	405.8940359887488	14.452	0.095817	14.441	14.393	14.489	-0.011218	1491	31	0.7190863	0.018577218	0.71756685	436.92978		11.287811	0.0058278	-0.0018991	-0.0016886	NaN	15.475	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4528.7			18726	13712	10724	11064							0.0631556959219779
NTIGKEEIQQR	11	Unmodified	_NTIGKEEIQQR_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.2370023176	3	439.237002	1314.68918	0.70584	0.00031003	0.76733	0.00033704	1.4732	0.00064707	439.2375131788694	12.58	0.07203	12.58	12.58	12.652	0	1437	28	0.7524962	0.016687691	0.7524962	456.83978	0	10.1311035						44	4	2	NaN	NaN	NaN	0.66679	1	19028	19028		9.6366	1.2829	1	4766.2			18727	5722	10725	11065	14884	14884					0.04442053132561341
NTIGKEEIQQR	11	Unmodified	_NTIGKEEIQQR_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.2370023176	3	439.237002	1314.68918	1.2144	0.00053343	-2.4867	-0.0010923	-1.2723	-0.00055882	439.23574020093895	12.582	0.072052	12.573	12.573	12.645	-0.0088415	1437	25	0.7524962	0.014834344	0.75097674	456.83978	0	9.00592						65	4	3	NaN	NaN	NaN	0.525	1	18191	18191		17.579	9.1223	1	4945.9			18728	5722	10725	11065	14885	14885					0.04442053132561341
NTIQNEAQR	9	Unmodified	_NTIQNEAQR_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.27034395165	2	537.270344	1072.52613	1.8775	0.0010087	-1.6737	-0.00089921	0.20385	0.00010952	537.269402841254	11.932	0.24011	11.932	11.86	12.1	0	1272	34	0.854179	0.020277202	0.854179	346.5276	0	8.226166						176	11	2	NaN	NaN	NaN	0.034172	1	11662	11662		53.652	26.355	1	20370			18729	1957	10726	11066	14886	14886					-0.007227051986319566
NTIQNEAQR	9	Unmodified						0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.270344	1072.52613	1.2843	0.00069002	0.75218	0.00040413	2.0365	0.0010941	537.2695548987856	11.982	0.11998	11.974	11.974	12.094	-0.0081863	1269	46	0.8560222	0.027638733	0.85450274	347.27533		11.212616	0.0209	0.0020073	0.00016187	NaN	53.652	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6083			18730	1957	10726	11066							-0.007227051986319566
NTLLYILH	8	Unmodified	_NTLLYILH_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000496854.1_1_2:187533488-187534577:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.78710993155	2	493.78711	985.559667	1.9788	0.00097712	-7.5408	-0.0037235	-5.562	-0.0027464	493.78338661329013	17.738	0.047922	17.724	17.724	17.772	-0.013786	1293	31	0.84127116	0.018446803	0.8397517	341.67267	0	7.4919434						45	3	2	NaN	NaN	NaN	0.83849	1	7905	7905		4.0537	0.085174	1	3681			18731	3159	10727	11067	14887	14887					0.06630948311226348
NTLLYILH	8	Unmodified						0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000496854.1_1_2:187533488-187534577:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	493.78711	985.559667	2.105	0.0010394	-7.4686	-0.0036879	-5.3636	-0.0026485	493.78408539337244	17.741	0.047937	17.741	17.717	17.765	0	1293	37	0.84127116	0.022136092	0.84127116	341.67267		8.990326	0.0084668	4.3754E-05	0.00075972	NaN	4.0537	65	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4414.3			18732	3159	10727	11067							0.06630948311226348
NTLNLPMQNF	10	Unmodified	_NTLNLPMQNF_					0	0	0			REV__ENSG00000152990|ENST00000334304|ADGRA3	REV__ENSG00000152990|ENST00000334304|ADGRA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2949731409001	2	596.294973	1190.57539	1.0274	0.00061261	1.2031	0.00071739	2.2304	0.00133	596.2952099876811	24.164	0.096478	24.151	24.103	24.199	-0.012749	1167	40	0.91857195	0.023870885	0.9170525	372.18192	0	9.671875						70	5	2	NaN	NaN	NaN	0.58645	1	15553	15553		15.822	0.96793	1	17622	+		18733	10064	10728	11068	14888	14888					-0.012271332340333174
NTPKENCNRGR	11	Unmodified	_NTPKENCNRGR_					0	0	0			REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.8123843293499	2	644.812384	1287.61022	2.0291	0.0013084	-6.7191	-0.0043325	-4.69	-0.0030241	644.8086046784942	19.082	0.1201	19.068	18.996	19.116	-0.014059	1143	61	0.9332562	0.036694765	0.93173677	377.805	0	14.85495						180	6	3	NaN	NaN	NaN	0.72342	1	17730	17730		5.9198	1.6096	1	18388	+		18734	8369	10729	11069	14889	14889					-0.022084973733853985
NTPKENCNRGR	11	Unmodified						0	0	0			REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	644.812384	1287.61022	2.0291	0.0013084	-6.7191	-0.0043325	-4.69	-0.0030241	644.8086046784942	19.082	0.1201	19.068	18.996	19.116	-0.014059	1143	61	0.9332562	0.036694765	0.93173677	377.805		14.85495	0.015767	0.0006828	0.0038284	NaN	5.9198	180	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18388	+		18735	8369	10729	11069							-0.022084973733853985
NTSIEIIK	8	Unmodified	_NTSIEIIK_					0	0	0		tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392003	1	917.530224	916.522947	1.8907	0.0017348	0.18378	0.00016863	2.0745	0.0019034	917.5294146951397	58.797	0.16794	58.797	58.725	58.893	0	345	37	1.4143922	0.02140057	1.4143922	287.52185	0	4.3503723						67	8	2	NaN	NaN	NaN	0.8439	1	6356	6356		3.1533	0	1	3336.8			18736	13925	10730	11070	14890	14890					0.061346516946855445
NTSIEIIK	8	Unmodified	_NTSIEIIK_					0	0	0		tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392003	1	917.530224	916.522947	1.7653	0.0016197	1.6612	0.0015242	3.4265	0.003144	917.5320211208775	58.485	0.14381	58.485	58.437	58.581	0	348	40	1.412609	0.02318275	1.412609	287.15933	0	4.7126465						103	7	2	NaN	NaN	NaN	0.84512	1	6359	6359		2.4615	0	1	6196.1			18737	13925	10730	11070	14891	14891					0.061346516946855445
NTSIEIIK	8	Unmodified	_NTSIEIIK_					0	0	0		tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	tr|U7SZ49|U7SZ49_FUSNUEnoyl-[acylcarrierprotein]reductaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00845PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392003	1	917.530224	916.522947	2.2511	0.0020654	1.5765	0.0014465	3.8276	0.0035119	917.5312226786118	56.804	0.048153	56.804	56.78	56.828	0	345	28	1.4143922	0.016049623	1.4143922	287.52185	0	3.2626038						31	3	2	NaN	NaN	NaN	0.8439	1	6362	6362		3.1533	0	1	1549.5			18738	13925	10730	11070	14892	14892					0.061346516946855445
NTTSAVTVK	9	Unmodified	_NTTSAVTVK_					0	0	0		ENST00000496450.1_1_11:27505577-27505652:+|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.7560067684	2	460.756007	919.497461	0.98136	0.00045217	-2.1116	-0.00097292	-1.1302	-0.00052075	460.7557061262859	12.51	0.072105	12.501	12.501	12.573	-0.0088415	1362	43	0.79879075	0.025887072	0.7972713	324.74033	0	10.524109						56	4	2	NaN	NaN	NaN	0.46713	1	6279	6279		10.965	3.4247	1	5332.9			18739	5730	10731	11071	14893	14893					0.0344917717224007
NTTSAVTVK	9	Unmodified	_NTTSAVTVK_					0	0	0		ENST00000496450.1_1_11:27505577-27505652:+|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.7560067684	2	460.756007	919.497461	0.87874	0.00040489	-0.82171	-0.00037861	0.05703	2.6277E-05	460.7554352149118	12.462	0.072008	12.453	12.381	12.453	-0.0088415	1362	43	0.79879075	0.025889874	0.7972713	324.74033	0	10.525269						68	4	2	NaN	NaN	NaN	0.46713	1	6280	6280		10.965	0.36015	1	6830.1			18740	5730	10731	11071	14894	14894					0.0344917717224007
NTVDEVYVSR	10	Unmodified	_NTVDEVYVSR_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.29348469695	2	591.293485	1180.57242	1.7697	0.0010464	-1.8336	-0.0010842	-0.063929	-3.7801E-05	591.2922106791669	16.662	0.16799	16.662	16.638	16.806	0	1218	88	0.8873258	0.053348422	0.8873258	359.55667	0	21.617493						408	8	5	NaN	NaN	NaN	0.0037187	1	15844	15844		80.24	36.465	1	62516			18741	4737	10732	11072	14895	14895					-0.01064685087203543
NTVDEVYVSR	10	Unmodified	_NTVDEVYVSR_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.29348469695	2	591.293485	1180.57242	1.4823	0.00087646	-0.58692	-0.00034704	0.89536	0.00052942	591.2929540102982	16.658	0.16778	16.645	16.621	16.789	-0.013294	1215	82	0.8891654	0.049669147	0.88764596	360.3021	0	20.126617						348	8	4	NaN	NaN	NaN	9.4732E-06	1	15259	15259		118.29	71.699	1	63444			18742	4737	10732	11072	14896	14896					-0.01064685087203543
NTVELIIVR	9	Unmodified	_NTVELIIVR_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.8242237193501	2	528.824224	1055.63389	1.7618	0.00093168	-0.39965	-0.00021134	1.3622	0.00072034	528.8244203396299	23.489	0.072409	23.476	23.451	23.524	-0.013294	1236	46	0.876284	0.027617872	0.8747646	355.56735	0	11.206421						70	4	2	NaN	NaN	NaN	0.46215	1	10690	10690		11.17	2.9255	1	6925			18743	1891	10733	11073	14897	14897					0.10830291402771763
NTVELIIVR	9	Unmodified						0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.824224	1055.63389	1.8775	0.00099287	-0.67994	-0.00035957	1.1976	0.00063331	528.8241166038249	23.465	0.072353	23.465	23.441	23.513	0	1233	46	0.87812483	0.027617872	0.87812483	356.3143		11.206421	-0.0052058	-0.00013085	0.0016801	NaN	11.17	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5972.8			18744	1891	10733	11073							0.10830291402771763
NTVHDIVNR	9	Unmodified	_NTVHDIVNR_					0	0	0		ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ENSG00000119203|ENST00000238112|CPSF3	ASAP2-CPSF3|1|fusion	ASAP2-CPSF3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.28325436165	2	534.283254	1066.55196	2.007	0.0010723	-3.8148	-0.0020382	-1.8077	-0.00096585	534.781064006446	13.325	0.096102	13.325	13.3	13.397	0	1266	34	0.85786515	0.020272791	0.85786515	348.04773	0	8.224945						76	5	3	NaN	NaN	NaN	0.13999	1	11413	11413		30.035	9.5221	1	7237.2			18745	47	10734	11074	14898	14898					0.021341890436588073
NTVHDIVNR	9	Unmodified	_NTVHDIVNR_					0	0	0		ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|2|fusion;ENSG00000119203|ENST00000238112|CPSF3	ASAP2-CPSF3|1|fusion	ASAP2-CPSF3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.28325436165	2	534.283254	1066.55196	0.95381	0.0005096	-1.5035	-0.00080327	-0.54964	-0.00029366	534.2823817089286	13.349	0.09597	13.339	13.291	13.387	-0.010098	1266	34	0.85786515	0.020272791	0.8563457	348.0477	0	8.224976						101	5	3	NaN	NaN	NaN	0.37272	1	11144	11144		14.854	7.2664	1	9428			18746	47	10734	11074	14899	14899					0.021341890436588073
NVAALPGIVHR	11	Unmodified	_NVAALPGIVHR_					0	0	0		ENST00000487704.5_1_22:32797732-32808215:-|nuORF;ENSG00000100220|ENST00000216038|RTCB	ENST00000487704.5_1_22:32797732-32808215:-|nuORF	ENST00000487704.5_1_22:32797732-32808215:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.8407394508001	2	573.840739	1145.66693	2.2395	0.0012851	-1.4853	-0.00085233	0.75423	0.00043281	573.8393740003116	18.628	0.071922	18.628	18.604	18.676	0	1137	37	0.9369253	0.022012115	0.9369253	379.78864	0	8.92276						82	4	3	NaN	NaN	NaN	0.73894	1	14662	14662		6.9844	2.5713	1	7707			18747	1207	10735	11075	14900	14900					0.09991918245464149
NVAALPGIVHR	11	Unmodified	_NVAALPGIVHR_					0	0	0		ENST00000487704.5_1_22:32797732-32808215:-|nuORF;ENSG00000100220|ENST00000216038|RTCB	ENST00000487704.5_1_22:32797732-32808215:-|nuORF	ENST00000487704.5_1_22:32797732-32808215:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.8407394508001	2	573.840739	1145.66693	1.6688	0.00095764	-2.0395	-0.0011704	-0.37071	-0.00021273	573.8391698846116	18.698	0.071932	18.684	18.66	18.731	-0.014059	1137	40	0.9369253	0.023847759	0.93540585	379.78864	0	9.66684						94	4	3	NaN	NaN	NaN	0.64873	1	14176	14176		19.336	12.473	1	8925.7			18748	1207	10735	11075	14901	14901					0.09991918245464149
NVADLTSLR	9	Unmodified	_NVADLTSLR_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000558931.5_1_14:24614434-24614695:-|nuORF;ENST00000560592.5_1_14:24614521-24614695:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.7747308378	2	494.774731	987.534909	1.6916	0.00083694	-6.321	-0.0031275	-4.6294	-0.0022905	494.7709387227721	20.093	0.16819	20.093	20.069	20.237	0	1311	49	0.83019954	0.029533982	0.83019954	337.16675	0	11.994568						173	8	4	NaN	NaN	NaN	0.1507	1	8134	8134		28.495	13.32	1	22114			18749	1286	10736	11076	14902	14902					0.040642684378553895
NVADLTSLR	9	Unmodified	_NVADLTSLR_					0	0	0		ENSG00000100911|ENST00000216802|PSME2;ENST00000558931.5_1_14:24614434-24614695:-|nuORF;ENST00000560592.5_1_14:24614521-24614695:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENSG00000100911|ENST00000216802|PSME2	ENSG00000100911|ENST00000216802|PSME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.7747308378	2	494.774731	987.534909	1.0634	0.00052613	-3.0111	-0.0014898	-1.9477	-0.0009637	494.77389008978	20.116	0.1204	20.102	20.078	20.198	-0.014141	1311	55	0.83019954	0.033225775	0.8286801	337.16675	0	13.4938965						146	6	3	NaN	NaN	NaN	0.37272	1	7971	7971		14.854	1.3909	1	20242			18750	1286	10736	11076	14903	14903					0.040642684378553895
NVADLVVIL	9	Unmodified	_NVADLVVIL_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5822591097002	1	955.582259	954.574983	1.6994	0.0016239	-0.46671	-0.00044598	1.2327	0.0011779	955.5823483340776	34.469	0.21716	34.469	34.421	34.638	0	231	109	1.4820169	0.063977	1.4820169	301.09103	0	12.997772						400	10	4	NaN	NaN	NaN	0.032826	1	7208	7208		55.413	11.111	1	75356			18751	3441	10737	11077	14904	14904					0.09587815108432096
NVADLVVIL	9	Unmodified	_NVADLVVIL_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.5822591097002	1	955.582259	954.574983	1.4506	0.0013862	0.20731	0.00019811	1.6579	0.0015843	955.5825800132452	34.468	0.16887	34.467	34.419	34.587	-0.0006485	228	79	1.4837929	0.046176195	1.4822735	301.45184	0	9.381287						311	8	3	NaN	NaN	NaN	0.011206	1	7062	7062		89.256	27.984	1	75757			18752	3441	10737	11077	14905	14905					0.09587815108432096
NVAEVDKVTGR	11	Unmodified	_NVAEVDKVTGR_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3225764873999	2	594.322576	1186.6306	1.442	0.00085703	-1.834	-0.00109	-0.39199	-0.00023297	594.3208803702737	14.141	0.14413	14.141	14.117	14.261	0	1182	37	0.9093879	0.022047758	0.9093879	368.4748	0	8.933563						120	7	3	NaN	NaN	NaN	0.57312	1	16062	16062		15.786	3.2162	1	12627			18753	4813	10738	11078	14906	14906					0.04474996558064959
NVAEVDKVTGR	11	Unmodified	_NVAEVDKVTGR_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.3225764873999	2	594.322576	1186.6306	1.0174	0.00060465	-2.0124	-0.001196	-0.99508	-0.0005914	594.3210952902086	14.165	0.095773	14.154	14.13	14.225	-0.011219	1182	37	0.9093879	0.022047758	0.90786844	368.4748	0	8.933563						115	5	3	NaN	NaN	NaN	0.09133	1	15449	15449		40.435	7.6573	1	11587			18754	4813	10738	11078	14907	14907					0.04474996558064959
NVAGICGL	8	Unmodified	_NVAGICGL_					0	0	0			REV__ENST00000525898.5_1_11:44609042-44626792:+|nuORF	REV__ENST00000525898.5_1_11:44609042-44626792:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.3865361899001	1	746.386536	745.37926	1.327	0.00099043	-2.5656	-0.0019149	-1.2386	-0.0009245	746.3844328028216	32.296	0.072399	32.292	32.268	32.341	-0.0037613	579	85	1.2747238	0.05031395	1.2732043	260.00833	0	10.262665						85	4	2	NaN	NaN	NaN	0.80071	1	3906	3906		9.1232	0.83292	1	6023.7	+		18755	8685	10739	11079	14908	14908					-0.0036147361726079907
NVAPYDPHF	9	Unmodified	_NVAPYDPHF_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2483489118	2	530.248349	1058.48214	1.4236	0.00075487	-1.7173	-0.00091058	-0.29367	-0.00015572	530.247521701905	20.622	0.16867	20.622	20.597	20.766	0	1182	55	0.9093879	0.03307879	0.9093879	368.98703	0	13.4218445						209	8	4	NaN	NaN	NaN	0.36492	1	11008	11008		15.175	6.2134	1	26293			18756	3275	10740	11080	14909	14909					-0.04475689624973711
NVAPYDPHF	9	Unmodified	_NVAPYDPHF_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2483489118	2	530.248349	1058.48214	0.71251	0.00037781	-0.84549	-0.00044832	-0.13297	-7.0509E-05	530.2485216293161	20.646	0.096447	20.632	20.584	20.68	-0.014086	1179	64	0.9112251	0.038589835	0.90970564	369.73248	0	15.657959						187	5	3	NaN	NaN	NaN	0.36492	1	10775	10775		15.175	8.7455	1	26307			18757	3275	10740	11080	14910	14910					-0.04475689624973711
NVCLELTIW	9	Carbamidomethyl (C)	_NVC(Carbamidomethyl (C))LELTIW_	NVC(1)LELTIW		NVC(53)LELTIW		0	1	0		ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1147.5816071826998	1	1147.58161	1146.57433	2.1832	0.0025053	-3.677	-0.0042197	-1.4939	-0.0017144	1147.5778348754836	41.811	0.26444	41.811	41.714	41.979	0	69	70	1.5776473	0.0406214	1.5776473	319.75504	0	8.233093						311	12	3	NaN	NaN	NaN	0.036546	1	14685	14685		52.624	13.165	1	29208			18758	3580	10741	11081	14911	14911	3				0.00690652397042868
NVCLELTIW	9	Carbamidomethyl (C)	_NVC(Carbamidomethyl (C))LELTIW_	NVC(1)LELTIW		NVC(45)LELTIW		0	1	0		ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	ENSG00000147041|ENST00000297875|SYTL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1147.5816071826998	1	1147.58161	1146.57433	1.5883	0.0018227	-2.3056	-0.0026458	-0.71728	-0.00082314	1148.5814824554716	41.737	0.12037	41.745	41.697	41.817	0.0082588	63	64	1.5811787	0.03708136	1.5796592	320.47076	0	7.515564						161	6	2	NaN	NaN	NaN	0.055351	1	14201	14201		44.638	10.2	1	21668			18759	3580	10741	11081	14912	14912	3				0.00690652397042868
NVDEEDYEL	9	Unmodified	_NVDEEDYEL_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.4582403876	1	1125.45824	1124.45096	2.2231	0.002502	0.39246	0.00044169	2.6155	0.0029437	1125.4588184321137	22.139	0.12065	22.139	22.091	22.212	0	153	49	1.5281296	0.028337836	1.5281296	309.79138	0	5.744812						163	6	3	NaN	NaN	NaN	0.024359	1	13855	13855		66.481	31.185	1	13526			18760	4001	10742	11082	14913	14913					-0.10628352240360073
NVDEEDYEL	9	Unmodified	_NVDEEDYEL_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.4582403876	1	1125.45824	1124.45096	1.1442	0.0012877	0.95228	0.0010718	2.0964	0.0023594	1125.4598353124513	22.139	0.14472	22.125	22.077	22.222	-0.013731	150	46	1.5299006	0.026565313	1.5283811	310.1504	0	5.385498						138	7	2	NaN	NaN	NaN	0.015029	1	13426	13426		78.289	36.505	1	13230			18761	4001	10742	11082	14914	14914					-0.10628352240360073
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7587464226	2	525.758746	1049.50294	1.5714	0.00082618	-2.3927	-0.001258	-0.82129	-0.0004318	525.7576955769437	25.202	0.12066	25.202	25.153	25.274	0	1290	46	0.84311575	0.027668655	0.84311575	342.1345	0	11.227875						122	6	2	NaN	NaN	NaN	0.46215	1	10604	10604		11.17	1.4243	1	22904			18762	2090	10743	11083	14915	14915					-0.019831440359666885
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5102163785998	1	1050.51022	1049.50294	2.31	0.0024266	-0.93946	-0.00098691	1.3705	0.0014397	1050.508450869997	25.202	0.14478	25.202	25.153	25.298	0	153	73	1.5281296	0.042520404	1.5281296	310.05963	0	8.627441						190	7	3	NaN	NaN	NaN	0.022185	1	10606	10606		69.233	26.915	1	20108			18763	2090	10743	11083	14916	14916					-0.019831440359666885
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7587464226	2	525.758746	1049.50294	1.4657	0.00077059	-2.3258	-0.0012228	-0.86017	-0.00045224	525.7575082362206	25.201	0.072412	25.189	25.141	25.214	-0.012011	1290	40	0.84311575	0.023976922	0.8415963	342.1345	0	9.729767						101	4	3	NaN	NaN	NaN	0.1507	1	10383	10383		28.495	16.447	1	17772			18764	2090	10743	11083	14917	14917					-0.019831440359666885
NVDEGIYQL	9	Unmodified	_NVDEGIYQL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5102163785998	1	1050.51022	1049.50294	1.8576	0.0019515	-0.13999	-0.00014706	1.7176	0.0018044	1050.51045591745	25.201	0.16887	25.189	25.141	25.31	-0.012011	153	61	1.5281296	0.03542614	1.5266101	310.05963	0	7.188019						192	8	3	NaN	NaN	NaN	0.013959	1	10385	10385		80.901	30.94	1	18206			18765	2090	10743	11083	14918	14918					-0.019831440359666885
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4996516923001	1	984.499652	983.492375	1.8382	0.0018097	-0.062323	-6.1357E-05	1.7758	0.0017483	984.4995481397999	24.333	0.28945	24.333	24.261	24.55	0	288	124	1.4482387	0.07296741	1.4482387	294.10547	0	14.818054						530	13	4	NaN	NaN	NaN	0.010878	1	8004	8004		90.252	20.889	1	121340			18766	2102	10744	11084	14919	14919					-3.126690376120678E-05
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4996516923001	1	984.499652	983.492375	1.8352	0.0018067	-0.7532	-0.00074152	1.082	0.0010652	984.4991296598085	24.333	0.16895	24.32	24.272	24.441	-0.012749	288	100	1.4482387	0.058711052	1.4467193	294.10547	0	11.922913						451	8	4	NaN	NaN	NaN	0.024359	1	7830	7830		66.481	24.164	1	109320			18767	2102	10744	11084	14920	14920					-3.126690376120678E-05
NVDPDSVVL	9	Unmodified	_NVDPDSVVL_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.4887526550002	1	957.488753	956.481476	1.9919	0.0019072	1.1726	0.0011228	3.1645	0.0030299	957.4897299264184	24.96	0.33781	24.96	24.84	25.178	0	303	184	1.4393384	0.10871148	1.4393384	292.41202	0	22.08551						1025	15	4	NaN	NaN	NaN	0.013696	1	7251	7251		81.699	37.397	1	512830			18768	1170	10745	11085	14921	14921					0.0014947093535511158
NVDPDSVVL	9	Unmodified	_NVDPDSVVL_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.4887526550002	1	957.488753	956.481476	2.22	0.0021257	0.75601	0.00072387	2.9761	0.0028495	957.4894586231799	24.96	0.31362	24.948	24.827	25.141	-0.012394	300	199	1.4411188	0.11765361	1.4395994	292.77374	0	23.902191						1012	14	5	NaN	NaN	NaN	0.017558	1	7111	7111		75.089	25.128	1	463300			18769	1170	10745	11085	14922	14922					0.0014947093535511158
NVDVGDFVL	9	Unmodified	_NVDVGDFVL_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4938380329	1	977.493838	976.486562	1.619	0.0015826	3.2704	0.0031968	4.8894	0.0047794	977.4936641886256	30.993	0.24141	30.988	30.867	31.109	-0.0050716	264	94	1.4624695	0.055100203	1.46095	297.02484	0	11.190735						459	11	3	NaN	NaN	NaN	0.022082	1	7636	7636		69.363	38.753	1	71087			18770	2807	10746	11086	14923	14923					-0.002622252020501037
NVDVRKEEV	9	Unmodified	_NVDVRKEEV_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.29074504275	2	544.290745	1086.56694	1.5377	0.00083696	8.397	0.0045704	9.9347	0.0054074	544.7967506978739	27.953	0.14476	27.953	27.905	28.05	0	1245	40	0.87076044	0.02393806	0.87076044	353.1965	0	9.709717						128	7	3	NaN	NaN	NaN	0.34922	1	12249	12249		15.822	0.35925	1	12906	+		18771	13115;9440	10747	11087	14924	14924					0.027116361209891693
NVDVRKEEV	9	Unmodified						0	0	0			REV__nc|ENSG00000127603|O94854|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.290745	1086.56694	1.5377	0.00083696	8.397	0.0045704	9.9347	0.0054074	544.7967506978739	27.953	0.14476	27.953	27.905	28.05	0	1245	40	0.87076044	0.02393806	0.87076044	353.1965		9.709717	-0.007194	0.00034061	-0.00016098	NaN	15.822	128	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12906	+		18772	13115;9440	10747	11087							0.027116361209891693
NVDVRKEEV	9	Unmodified						0	0	0			REV__nc|ENSG00000127603|O94854|MACF1;REV__nc|ENSG00000127603|Q9UPN3-5|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.290745	1086.56694	1.3008	0.000708	7.4417	0.0040505	8.7425	0.0047585	544.2948624104168	27.977	0.048246	27.968	27.919	27.968	-0.0089798	1242	31	0.87260187	0.018412888	0.8710824	353.9434		7.468628	0.007194	-0.00069926	0.00016098	NaN	15.822	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7335.5	+		18773	13115;9440	10747	11087							0.027116361209891693
NVEEADAAM	9	Unmodified	_NVEEADAAM_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.3931377102999	1	949.393138	948.385861	1.9306	0.0018329	0.58015	0.0005508	2.5108	0.0023837	949.3936657954158	17.141	0.19202	17.141	17.093	17.285	0	375	55	1.3965509	0.03213501	1.3965509	283.7538	0	6.5292664						192	9	2	NaN	NaN	NaN	0.0092442	1	7040	7040		93.929	48.764	1	24917			18774	5088	10748	11088	14925	14925					-0.09039625247214644
NVEEADAAM	9	Unmodified	_NVEEADAAM_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.3931377102999	1	949.393138	948.385861	1.718	0.0016311	0.05888	5.5901E-05	1.7769	0.001687	949.3933080870991	17.138	0.2159	17.124	17.076	17.292	-0.013569	375	58	1.3965509	0.0339185	1.3950315	283.7538	0	6.891632						240	10	3	NaN	NaN	NaN	0.0092442	1	6909	6909		93.929	41.305	1	26836			18775	5088	10748	11088	14926	14926					-0.09039625247214644
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(120)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.3880523324	1	965.388052	964.380776	2.3295	0.0022489	-1.0411	-0.0010051	1.2884	0.0012439	965.3868414469656	13.685	0.28825	13.685	13.613	13.901	0	393	58	1.3858368	0.03393662	1.3858368	281.51007	0	6.8936462						323	13	2	NaN	NaN	NaN	0.00012056	1	7455	7455		121.66	57.928	1	39259			18776	5088	10748	11089	14927	14927		534			-0.10283929109834844
NVEEADAAM	9	Oxidation (M)	_NVEEADAAM(Oxidation (M))_		NVEEADAAM(1)		NVEEADAAM(120)	0	0	1		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.3880523324	1	965.388052	964.380776	1.2716	0.0012276	-0.040222	-3.883E-05	1.2314	0.0011888	965.387956236181	13.685	0.28762	13.675	13.603	13.89	-0.010672	390	58	1.3876231	0.033940196	1.3861036	281.8729	0	6.894409						343	13	3	NaN	NaN	NaN	0.00012056	1	7302	7302		121.66	76.494	1	35613			18777	5088	10748	11089	14928	14928		534			-0.10283929109834844
NVFATDAIL	9	Unmodified	_NVFATDAIL_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.514573475	1	963.514573	962.507297	1.5164	0.0014611	-5.8365	-0.0056235	-4.3201	-0.0041625	963.5076944939013	29.401	0.16899	29.401	29.353	29.522	0	243	160	1.4749115	0.09429371	1.4749115	299.61234	0	19.154755						571	8	3	NaN	NaN	NaN	0.017076	1	7406	7406		75.698	31.06	1	97550			18778	1235	10749	11090	14929	14929					0.02454365177618456
NVFATDAIL	9	Unmodified	_NVFATDAIL_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.514573475	1	963.514573	962.507297	1.2465	0.001201	-3.7573	-0.0036202	-2.5107	-0.0024191	963.5114613397656	29.4	0.19302	29.393	29.344	29.537	-0.0077209	240	97	1.4766881	0.056874514	1.4751687	299.97324	0	11.553436						437	9	3	NaN	NaN	NaN	0.02857	1	7252	7252		60.982	21.523	1	84357			18779	1235	10749	11090	14930	14930					0.02454365177618456
NVFNNNAAATA	11	Unmodified	_NVFNNNAAATA_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.764894433	2	553.764894	1105.51524	0.50444	0.00027934	-7.3035	-0.0040444	-6.7991	-0.0037651	554.2617382862018	33.311	0.096539	33.311	33.287	33.383	0	1242	49	0.87260187	0.02945429	0.87260187	353.8675	0	11.944611						137	5	3	NaN	NaN	NaN	0.74155	1	13072	13072		4.7291	2.2676	1	9772.4	+		18780	10880	10750	11091	14931	14931					-0.03330107572924135
NVFQNDEFDVF	11	Unmodified	_NVFQNDEFDVF_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30188501-30200764:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.30404938325	2	687.304049	1372.59355	1.495	0.0010275	0.57092	0.0003924	2.0659	0.0014199	687.8062415150599	32.08	0.12064	32.08	32.056	32.177	0	1095	58	0.9625867	0.03478682	0.9625867	389.4225	0	14.073303						118	6	2	NaN	NaN	NaN	0.6875	1	19817	19817		8.2775	1.8476	1	11465			18781	1225	10751	11092	14932	14932					-0.07784719778328508
NVFVGAALCI	10	Unmodified	_NVFVGAALCI_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.77314527655	2	503.773145	1005.53174	1.4305	0.00072065	2.3613	0.0011895	3.7918	0.0019102	503.77497534713524	30.824	0.07239	30.818	30.794	30.866	-0.0057564	1326	34	0.8209676	0.020318925	0.81944823	333.33542	0	8.2500305						53	4	2	NaN	NaN	NaN	0.77421	1	8638	8638		1.9246	0.6828	1	4540.9			18782	3509	10752	11093	14933	14933					0.02919302059490292
NVGAPDVTL	9	Unmodified	_NVGAPDVTL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4676232824	1	885.467623	884.460347	2.1395	0.0018945	-0.74177	-0.00065681	1.3978	0.0012377	885.467202772105	23.441	0.096527	23.441	23.417	23.513	0	396	67	1.3840506	0.039301276	1.3840506	281.50476	0	7.993561						183	5	3	NaN	NaN	NaN	0.14787	1	5862	5862		28.896	9.732	1	31095			18783	2444	10753	11094	14934	14934					0.013495056264787308
NVGAPDVTL	9	Unmodified	_NVGAPDVTL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4676232824	1	885.467623	884.460347	2.0428	0.0018089	-0.14899	-0.00013193	1.8938	0.0016769	885.4672464153897	23.465	0.072453	23.451	23.427	23.5	-0.013294	393	70	1.3858368	0.041089892	1.3843174	281.8681	0	8.357361						183	4	4	NaN	NaN	NaN	6.5392E-05	1	5742	5742		125.02	57.866	1	31570			18784	2444	10753	11094	14935	14935					0.013495056264787308
NVGDYIEAVL	10	Unmodified	_NVGDYIEAVL_					0	0	0		PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5571665711998	1	1092.55717	1091.54989	1.5006	0.0016394	-1.0068	-0.0011	0.49376	0.00053946	1092.55669003613	31.766	0.096546	31.766	31.742	31.839	0	108	49	1.5546752	0.028289795	1.5546752	315.2881	0	5.7371826						113	5	2	NaN	NaN	NaN	0.038721	1	12470	12470		55.958	18.656	1	22113			18785	1293	10754	11095	14936	14936					0.007777155151643456
NVGDYIEAVL	10	Unmodified	_NVGDYIEAVL_					0	0	0		PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5571665711998	1	1092.55717	1091.54989	0.58719	0.00064154	-2.386	-0.0026068	-1.7988	-0.0019653	1092.5540624382863	31.765	0.14486	31.761	31.712	31.857	-0.0044155	105	58	1.5564433	0.033588886	1.5549239	315.6467	0	6.8118286						157	7	2	NaN	NaN	NaN	0.15916	1	12152	12152		39.039	15.922	1	27737			18786	1293	10754	11095	14937	14937					0.007777155151643456
NVGYMWRLFLF	11	Unmodified	_NVGYMWRLFLF_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.5847973641333	3	482.584797	1444.73256	2.1484	0.0010368	6.6287	0.0031989	8.7771	0.0042357	482.5881787987225	23.103	0.072371	23.103	23.079	23.152	0	1428	34	0.7580582	0.020389438	0.7580582	459.78595	0	12.366852						85	4	3	NaN	NaN	NaN	0.74155	1	20360	20360		1.8502	0	1	6846.2	+		18787	10366	10755	11096	14938	14938					0.027985713761381703
NVGYMWRLFLF	11	Unmodified						0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	482.584797	1444.73256	2.1484	0.0010368	6.6287	0.0031989	8.7771	0.0042357	482.5881787987225	23.103	0.072371	23.103	23.079	23.152	0	1428	34	0.7580582	0.020389438	0.7580582	459.78595		12.366852	0	0	0	NaN	1.8502	85	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6846.2	+		18788	10366	10755	11096							0.027985713761381703
NVHELEALL	9	Unmodified	_NVHELEALL_					0	0	0		nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	nc|ENSG00000154305|Q5JRA6-2|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2849313833501	2	519.284931	1036.55531	1.9136	0.00099373	-0.69574	-0.00036129	1.2179	0.00063244	519.2847812367085	25.371	0.14478	25.371	25.346	25.491	0	1230	103	0.8799654	0.06263775	0.8799654	357.14575	0	25.422333						166	7	3	NaN	NaN	NaN	0.25548	1	10072	10072		21.771	5.1869	1	16657			18789	3838	10756	11097	14939	14939					0.03849439097666618
NVHELEALL	9	Unmodified						0	0	0		nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	nc|ENSG00000154305|Q5JRA6-2|MIA3	nc|ENSG00000154305|Q5JRA6-2|MIA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.284931	1036.55531	1.7774	0.00092299	0.85727	0.00044517	2.6347	0.0013682	519.2853845073458	25.394	0.12063	25.382	25.358	25.479	-0.012011	1233	64	0.87812483	0.03865248	0.8766054	356.39874		15.687592	0.0059251	0.00076914	-0.00168	NaN	21.771	148	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16633			18790	3838	10756	11097							0.03849439097666618
NVIKRSIEL	9	Unmodified	_NVIKRSIEL_					0	0	0			REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	REV__tr|U7ST92|U7ST92_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01267PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.329673238	2	536.329673	1070.64479	2.3291	0.0012492	-2.0348	-0.0010913	0.29433	0.00015786	536.3286133633283	18.149	0.14395	18.149	18.077	18.221	0	1200	37	0.89836043	0.022062063	0.89836043	364.4594	0	8.950439						98	7	2	NaN	NaN	NaN	0.27608	1	11605	11605		20.449	0	1	10904	+		18791	13487	10757	11098	14940	14940					0.11229693777045213
NVINNAILR	9	Unmodified	_NVINNAILR_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.8063653172001	2	513.806365	1025.59818	1.3986	0.00071861	-2.094	-0.0010759	-0.69536	-0.00035728	513.8054594049146	20.044	0.072227	20.03	20.006	20.078	-0.014141	1287	40	0.8449601	0.0239743	0.84344065	342.98642	0	9.731659						69	4	2	NaN	NaN	NaN	0.31737	1	9417	9417		17.799	3.7574	1	9704.4			18792	4370	10758	11099	14941	14941					0.08640253945759468
NVINNAILR	9	Unmodified						0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.806365	1025.59818	2.0174	0.0010365	-2.7107	-0.0013928	-0.69335	-0.00035625	513.8047008394027	20.021	0.072111	20.021	19.997	20.069	0	1281	34	0.84864825	0.020283759	0.84864825	344.48352		8.233612	-0.0046674	-0.000444	0.0026038	NaN	17.799	81	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9974.7			18793	4370	10758	11099							0.08640253945759468
NVINWENVTER	11	Unmodified	_NVINWENVTER_					0	0	0		ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.344040211	2	687.34404	1372.67353	1.6781	0.0011535	-1.1102	-0.0007631	0.56793	0.00039036	687.3419520960757	22.139	0.072351	22.125	22.101	22.173	-0.013731	1098	34	0.960755	0.020148396	0.9592356	388.68124	0	8.151215						55	4	2	NaN	NaN	NaN	0.6735	1	18890	18890		12.15	8.8885	1	4672.3			18794	7468	10759	11100	14942	14942					0.002097666155123079
NVINWENVTER	11	Unmodified						0	0	0		ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	ENST00000541573.5_1_6:160103527-160113001:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	687.34404	1372.67353	2.1388	0.0014701	0.02503	1.7204E-05	2.1639	0.0014873	687.3442389166726	22.139	0.096531	22.139	22.115	22.212	0	1098	37	0.960755	0.02198124	0.960755	388.68124		8.8927	0.0070652	0.0006446	0.00075972	NaN	12.15	74	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4316.6			18795	7468	10759	11100							0.002097666155123079
NVIQLVDVL	9	Unmodified	_NVIQLVDVL_					0	0	0		STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant;ENST00000586358.5_1_19:1207098-1220516:+|nuORF;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11	STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant	STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.6037228333001	1	1012.60372	1011.59645	1.1163	0.0011304	0.91224	0.00092374	2.0286	0.0020542	1012.6038227506324	33.793	0.04826	33.793	33.793	33.842	0	177	40	1.5139546	0.023045301	1.5139546	307.33282	0	4.678192						63	3	2	NaN	NaN	NaN	0.059222	1	9065	9065		42.995	14.099	1	5210.4			18796	2161	10760	11101	14943	14943					0.0911120013714708
NVIQLVDVL	9	Unmodified						0	0	0		STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant;ENST00000586358.5_1_19:1207098-1220516:+|nuORF;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11	STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant	STK11|p.H107L|1|0.1|ENSG00000118046|chr19:1218446-1218446|A/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.60372	1011.59645	1.4313	0.0014493	-1.3183	-0.001335	0.11291	0.00011433	1012.6030023950096	33.816	0.07243	33.814	33.79	33.863	-0.0018463	174	46	1.5157272	0.026587963	1.5142077	307.69266		5.397339	0.010528	-0.00082752	0.00012654	NaN	42.995	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5233.7			18797	2161	10760	11101							0.0911120013714708
NVIVNGLV	8	Unmodified	_NVIVNGLV_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.4985294803002	1	827.498529	826.491253	1.9428	0.0016076	-1.0114	-0.0008369	0.93139	0.00077073	827.497873825211	55.701	0.12046	55.701	55.653	55.773	0	423	55	1.3679651	0.032179594	1.3679651	278.53183	0	6.5520935						105	6	2	NaN	NaN	NaN	0.84727	1	5103	5103		1.2418	0	1	8105.6			18798	5612	10761	11102	14944	14944					0.07106703731392372
NVKVYSFL	8	Unmodified	_NVKVYSFL_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.2738353808	2	485.273835	968.533118	2.059	0.00099917	-3.6306	-0.0017619	-1.5716	-0.00076268	485.27179013137373	23.417	0.1206	23.417	23.393	23.513	0	1305	31	0.83389086	0.018452704	0.83389086	338.75717	0	7.4961853						76	6	2	NaN	NaN	NaN	0.83211	1	7574	7574		4.9097	0.94122	1	6100.9	+		18799	13130	10762	11103	14945	14945					0.04759259419893169
NVKVYSFL	8	Unmodified						0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.273835	968.533118	2.059	0.00099917	-3.6306	-0.0017619	-1.5716	-0.00076268	485.27179013137373	23.417	0.1206	23.417	23.393	23.513	0	1305	31	0.83389086	0.018452704	0.83389086	338.75717		7.4961853	-0.0052149	-0.00017877	0.00075972	NaN	4.9097	76	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6100.9	+		18800	13130	10762	11103							0.04759259419893169
NVKVYSFL	8	Unmodified						0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	485.273835	968.533118	2.4598	0.0011937	-3.2972	-0.0016	-0.83745	-0.00040639	485.2722851625981	23.441	0.072416	23.427	23.403	23.476	-0.013294	1305	37	0.83389086	0.022143304	0.8323714	338.75717		8.995422	0.0052149	0.00014484	-0.00075972	NaN	4.9097	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5307.3	+		18801	13130	10762	11103							0.04759259419893169
NVLMLPVYI	9	Unmodified	_NVLMLPVYI_					0	0	0			REV__ENST00000568308.1_1_15:89728670-89736600:+|nuORF	REV__ENST00000568308.1_1_15:89728670-89736600:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.6063653702001	1	1061.60637	1060.59909	1.2801	0.0013589	-9.3727	-0.0099501	-8.0926	-0.0085912	1061.5976866257665	33.287	0.048275	33.287	33.262	33.311	0	105	43	1.5564433	0.024756193	1.5564433	315.76172	0	5.0224						52	3	2	NaN	NaN	NaN	0.60063	1	11143	11143		5.4659	1.4973	1	3630.2	+		18802	9802	10763	11104	14946	14946					0.0712133227045797
NVLPAFPPK	9	Unmodified	_NVLPAFPPK_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;ENST00000489402.1_1_2:27593562-27595723:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5720287744001	1	982.572029	981.564752	1.2915	0.001269	6.7853	0.006667	8.0768	0.0079361	982.5797273397783	33.454	0.04829	33.452	33.428	33.476	-0.0018501	198	49	1.5015416	0.028388977	1.5000222	304.93835	0	5.7653503						65	3	2	NaN	NaN	NaN	0.36492	1	7777	7777		15.175	1.4383	1	5913			18803	2003	10764	11105	14947	14947					0.07323252173853234
NVLPAFPPK	9	Unmodified						0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;ENST00000489402.1_1_2:27593562-27595723:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	982.572029	981.564752	1.1645	0.0011442	8.009	0.0078694	9.1735	0.0090136	982.5799188993275	33.456	0.048267	33.456	33.431	33.48	0	198	52	1.5015416	0.030164957	1.5015416	304.93835		6.1259766	0.0015965	0.00048545	0.00075972	NaN	15.175	74	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6283.3			18804	2003	10764	11105							0.07323252173853234
NVQDHQSL	8	Unmodified	_NVQDHQSL_					0	0	0			REV__ENSG00000174738|ENST00000312521|NR1D2	REV__ENSG00000174738|ENST00000312521|NR1D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.72778064519997	2	470.727781	939.441008	1.4985	0.00070538	7.0879	0.0033365	8.5864	0.0040418	470.73112511989814	23.417	0.096487	23.417	23.369	23.465	0	1374	55	0.791392	0.03328693	0.791392	321.63187	0	13.528229						108	5	2	NaN	NaN	NaN	0.81756	1	6803	6803		6.8632	1.1691	1	11194	+		18805	10705	10765	11106	14948	14948					-0.031134506644320936
NVQGPDWHL	9	Unmodified	_NVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2592479491001	2	533.259248	1064.50394	2.2593	0.0012048	-0.45587	-0.0002431	1.8034	0.00096168	533.2583441556134	22.284	0.21697	22.284	22.236	22.453	0	1296	109	0.8394264	0.066351	0.8394264	340.5752	0	26.920166						451	10	5	NaN	NaN	NaN	0.030669	1	11322	11322		58.235	29.34	1	177020			18806	2444	10766	11107	14949	14949					-0.025728848763719725
NVQGPDWHL	9	Unmodified	_NVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2592479491001	2	533.259248	1064.50394	1.0738	0.00057264	1.8549	0.00098914	2.9287	0.0015618	533.2594972530196	22.308	0.21665	22.294	22.246	22.462	-0.013731	1296	112	0.8394264	0.068190396	0.83790696	340.5752	0	27.666473						548	10	4	NaN	NaN	NaN	0.03618	1	11061	11061		52.78	19.354	1	185870			18807	2444	10766	11107	14950	14950					-0.025728848763719725
NVQIEYAN	8	Unmodified	_NVQIEYAN_					0	0	0			REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4577868776	1	950.457787	949.45051	1.5682	0.0014905	-4.7487	-0.0045134	-3.1805	-0.0030229	950.4540148479575	24.96	0.096504	24.948	24.948	25.044	-0.012394	312	118	1.433996	0.069452286	1.4324765	291.35733	0	14.111206						265	5	2	NaN	NaN	NaN	0.6053	1	6934	6934		24.961	3.126	1	56640	+		18808	11364	10767	11108	14951	14951					-0.02623682378907688
NVQSSFFPE	9	Unmodified	_NVQSSFFPE_					0	0	0			REV__ENST00000361309.5_1_3:107778376-107779630:-|nuORF	REV__ENST00000361309.5_1_3:107778376-107779630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.4840016281	1	1054.484	1053.47673	2.2698	0.0023934	-11.554	-0.012183	-9.2839	-0.0097897	1054.4722342512264	25.467	0.12066	25.455	25.431	25.551	-0.012011	219	52	1.4891195	0.030177712	1.4876001	302.1297	0	6.1228027						101	6	2	NaN	NaN	NaN	0.64666	1	10550	10550		3.5698	0.78459	1	7561	+		18809	11846	10768	11109	14952	14952					-0.04787413207418467
NVSAVDPVA	9	Unmodified	_NVSAVDPVA_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.4519732182	1	871.451973	870.444697	1.6973	0.0014791	-0.65089	-0.00056722	1.0464	0.00091191	871.4517001009799	19.515	0.072248	19.5	19.476	19.549	-0.014141	483	37	1.3321642	0.02150333	1.3306447	271.0183	0	4.374695						62	4	2	NaN	NaN	NaN	0.13999	1	5528	5528		30.035	6.9178	1	4604.2			18810	2708	10769	11110	14953	14953					0.004292191094236841
NVTDIMLIL	9	Unmodified	_NVTDIMLIL_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5805445502	1	1031.58054	1030.57327	1.5067	0.0015543	3.4935	0.0036038	5.0001	0.005158	1032.5882619933384	36.591	0.096428	36.591	36.543	36.639	0	132	82	1.5405227	0.047761917	1.5405227	312.6487	0	9.693268						178	5	3	NaN	NaN	NaN	0.070055	1	9816	9816		40.154	5.715	1	14962			18811	4878	10770	11111	14954	14954					0.05920438028169883
NVTGAGGG	8	Unmodified	_NVTGAGGG_					0	0	0			REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.6535530696001	2	316.653553	631.292553	1.2126	0.00038396	4.8017	0.0015205	6.0142	0.0019044	316.6554181067001	41.328	0.096302	41.336	41.288	41.384	0.0082626	1533	127	0.6930556	0.07807511	0.6915362	283.63986	0	31.953003						287	5	2	NaN	NaN	NaN	0.84945	1	1429	1429		0	0	1	53547	+		18812	11606	10771	11112	14955	14955					-0.037841368474573756
NVTGAGGG	8	Unmodified	_NVTGAGGG_					0	0	0			REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.6535530696001	2	316.653553	631.292553	1.6525	0.00052327	6.0295	0.0019093	7.682	0.0024325	316.65599993665114	45.093	0.071907	45.105	45.081	45.153	0.011646	1533	31	0.6930556	0.018607497	0.6915362	283.63986	0	7.615265						39	4	2	NaN	NaN	NaN	0.84945	1	1431	1431		0	0	1	2077.9	+		18813	11606	10771	11112	14956	14956					-0.037841368474573756
NVTGAGGG	8	Unmodified						0	0	0			REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	316.653553	631.292553	2.3256	0.00073642	5.0146	0.0015879	7.3402	0.0023243	316.6569156331196	44.975	0.071873	44.975	44.951	45.023	0	1536	22	0.69119483	0.01302737	0.69119483	282.8783		5.3315735	-0.064676	-0.00027441	-0.0001707	NaN	0	24	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1072.7	+		18814	11606	10771	11112							-0.037841368474573756
NVTGAGGG	8	Unmodified						0	0	0			REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	REV__ENST00000281282.5_1_15:57668737-57730217:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	316.653553	631.292553	1.6525	0.00052327	6.0295	0.0019093	7.682	0.0024325	316.65599993665114	45.093	0.071907	45.105	45.081	45.153	0.011646	1533	31	0.6930556	0.018607497	0.6915362	283.63986		7.615265	0.064676	0.00036831	0.0001707	NaN	0	39	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2077.9	+		18815	11606	10771	11112							-0.037841368474573756
NVTKEEPLM	9	Oxidation (M)	_NVTKEEPLM(Oxidation (M))_		NVTKEEPLM(1)		NVTKEEPLM(44)	0	0	1		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7682568639	2	538.768257	1075.52196	1.7608	0.00094868	-2.5554	-0.0013768	-0.7946	-0.0004281	538.7672185300744	14.285	0.14412	14.285	14.237	14.381	0	1233	88	0.87812483	0.053417623	0.87812483	356.22946	0	21.669952						261	7	3	NaN	NaN	NaN	0.057383	1	11783	11783		43.776	12.984	1	26092			18816	1455	10772	11113	14957	14957		164			-0.012779307365690329
NVTKEEPLM	9	Unmodified	_NVTKEEPLM_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.77079955285	2	530.7708	1059.52705	1.2445	0.00066052	0.51479	0.00027323	1.7592	0.00093376	531.2730333791573	17.114	0.096066	17.1	17.076	17.172	-0.013569	1254	85	0.8652351	0.0516119	0.86371565	351.06744	0	20.941406						199	5	3	NaN	NaN	NaN	0.14787	1	10831	10831		28.896	5.778	1	19536			18817	1455	10772	11114	14958	14958					-0.0003362687393746455
NVTKEEPLM	9	Unmodified						0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.7708	1059.52705	1.9184	0.0010182	-1.3385	-0.00071045	0.57982	0.00030775	530.7701371504663	17.093	0.096052	17.093	17.069	17.165	0	1284	79	0.8468043	0.047925293	0.8468043	343.5892		19.445618	-0.0035291	-0.0008934	-0.0084557	NaN	28.896	189	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24521			18818	1455	10772	11114							-0.0003362687393746455
NVTWVIVNL	9	Unmodified	_NVTWVIVNL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.3056668254501	2	529.305667	1056.59678	0.84153	0.00044543	-2.0865	-0.0011044	-1.245	-0.00065898	529.3049183863614	33.842	0.12064	33.842	33.793	33.914	0	1269	49	0.8560222	0.02948612	0.8560222	347.3417	0	11.964355						158	6	3	NaN	NaN	NaN	0.024221	1	10958	10958		66.656	24.339	1	20741			18819	1388	10773	11115	14959	14959					0.0707461985698501
NVTWVIVNL	9	Unmodified	_NVTWVIVNL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.3056668254501	2	529.305667	1056.59678	0.42881	0.00022697	-1.4708	-0.0007785	-1.042	-0.00055153	529.3045878342508	33.84	0.12064	33.839	33.79	33.911	-0.0018463	1266	58	0.85786515	0.035009086	0.8563457	348.0895	0	14.205383						154	6	2	NaN	NaN	NaN	0.048656	1	10731	10731		47.482	15.029	1	24849			18820	1388	10773	11115	14960	14960					0.0707461985698501
NVTWVIVNL	9	Unmodified	_NVTWVIVNL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.6040571843	1	1057.60406	1056.59678	1.0068	0.0010648	-0.58549	-0.00061922	0.42134	0.00044561	1057.604256507123	33.84	0.14479	33.839	33.79	33.935	-0.0018463	108	73	1.5546752	0.04243028	1.5531558	315.4183	0	8.608429						212	7	3	NaN	NaN	NaN	0.048656	1	10732	10732		47.482	15.029	1	23048			18821	1388	10773	11115	14961	14961					0.0707461985698501
NVTWVIVNL	9	Unmodified						0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1057.60406	1056.59678	1.2311	0.001302	-2.9456	-0.0031153	-1.7145	-0.0018132	1057.6012950485872	33.842	0.096519	33.842	33.817	33.914	0	108	91	1.5546752	0.053026676	1.5546752	315.4183		10.75824	0.0015243	-0.0015687	0.00075972	NaN	47.482	225	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27985			18822	1388	10773	11115							0.0707461985698501
NVTYVVKER	9	Unmodified	_NVTYVVKER_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000575892.1_1_16:31176981-31177245:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF;ENST00000484981.1_1_3:58151207-58156486:+|nuORF	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3114804848501	2	554.31148	1106.60841	1.5318	0.00084909	0.36473	0.00020217	1.8965	0.0010513	554.3110756170782	13.421	0.072021	13.421	13.397	13.469	0	1197	40	0.9001988	0.023899257	0.9001988	365.05444	0	9.691772						76	4	2	NaN	NaN	NaN	0.54912	1	13141	13141		7.5876	1.1577	1	5951.7			18823	2992	10774	11116	14962	14962					0.05936816880330298
NVTYVVKER	9	Unmodified						0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000575892.1_1_16:31176981-31177245:+|nuORF;ENST00000481470.5_1_3:58155276-58156486:+|nuORF;ENST00000484981.1_1_3:58151207-58156486:+|nuORF	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.31148	1106.60841	2.1646	0.0011999	-1.7157	-0.00095105	0.44889	0.00024882	554.3101205858443	13.469	0.047945	13.459	13.411	13.459	-0.010098	1194	28	0.902037	0.016542077	0.9005176	365.7999		6.708252	0.019304	-0.0013377	0.00015938	NaN	7.5876	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2594.9			18824	2992	10774	11116							0.05936816880330298
NVWQGHHYE	9	Unmodified	_NVWQGHHYE_					0	0	0			REV__MCF2L2|p.R192H|1|0.22|ENSG00000053524|chr3:183323263-183323263|C/T|missense_variant	REV__MCF2L2|p.R192H|1|0.22|ENSG00000053524|chr3:183323263-183323263|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2597792653502	2	585.259779	1168.50501	2.0915	0.0012241	-10.663	-0.0062403	-8.571	-0.0050163	585.2538081317149	23.513	0.072292	23.513	23.489	23.562	0	1239	49	0.87444305	0.029451072	0.87444305	354.3787	0	11.935394						79	4	2	NaN	NaN	NaN	0.66529	1	15422	15422		2.1763	0.073765	1	7772.6	+		18825	13067	10775	11117	14963	14963					-0.072506705074602
NVWQGHHYE	9	Unmodified						0	0	0			REV__MCF2L2|p.R192H|1|0.22|ENSG00000053524|chr3:183323263-183323263|C/T|missense_variant	REV__MCF2L2|p.R192H|1|0.22|ENSG00000053524|chr3:183323263-183323263|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.259779	1168.50501	2.0915	0.0012241	-10.663	-0.0062403	-8.571	-0.0050163	585.2538081317149	23.513	0.072292	23.513	23.489	23.562	0	1239	49	0.87444305	0.029451072	0.87444305	354.3787		11.935394	0	0	0	NaN	2.1763	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7772.6	+		18826	13067	10775	11117							-0.072506705074602
NVWTFWFH	8	Unmodified	_NVWTFWFH_					0	0	0		ENST00000240487.5_2_4:154556692-154557535:+|nuORF	ENST00000240487.5_2_4:154556692-154557535:+|nuORF	ENST00000240487.5_2_4:154556692-154557535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7692515294001	2	568.769252	1135.52395	1.2092	0.00068777	4.7157	0.0026821	5.9249	0.0033699	568.7722673488914	21.392	0.14435	21.378	21.33	21.475	-0.014006	1056	133	0.9863805	0.08049393	0.9848611	399.87805	0	32.632202						330	7	3	NaN	NaN	NaN	0.84692	1	13824	13824		1.4396	0.19772	1	28057			18827	6260	10776	11118	14964	14964					-0.038390891457765974
NVYFNAFWTI	10	Unmodified	_NVYFNAFWTI_					0	0	0		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8138559983	2	637.813856	1273.61316	1.6388	0.0010452	-5.6789	-0.0036221	-4.0401	-0.0025768	638.3107519192802	22.042	0.04813	22.029	22.005	22.053	-0.013731	1128	49	0.9424274	0.029343128	0.94090796	381.56223	0	11.8802185						63	3	2	NaN	NaN	NaN	0.44412	1	17480	17480		21.771	1.0834	1	10045			18828	3622	10777	11119	14965	14965					-0.012702989769195483
NVYFNAFWTI	10	Unmodified						0	0	0		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.813856	1273.61316	1.8956	0.001209	-4.8607	-0.0031002	-2.9651	-0.0018912	637.8117382722875	22.019	0.024086	22.019	21.994	22.019	0	1131	34	0.94059354	0.020174503	0.94059354	380.81973		8.168091	-0.0050269	0.00062374	-0.00015721	NaN	21.771	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6170			18829	3622	10777	11119							-0.012702989769195483
NVYSVHFEK	9	Unmodified	_NVYSVHFEK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7825558699001	2	561.782556	1121.55056	1.0916	0.00061324	-6.4419	-0.003619	-5.3503	-0.0030057	561.779838265604	33.069	0.12066	33.069	33.021	33.142	0	1230	58	0.8799654	0.034971297	0.8799654	356.7908	0	14.179443						132	6	2	NaN	NaN	NaN	0.6532	1	13738	13738		3.2116	0.32214	1	17816			18830	1299	10778	11120	14966	14966					-0.005354450451022785
NVYSVHFEK	9	Unmodified						0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.782556	1121.55056	0.96473	0.00054197	-6.59	-0.0037022	-5.6253	-0.0031602	561.7797396335474	33.068	0.096359	33.066	33.018	33.114	-0.0024796	1224	61	0.883646	0.036813855	0.88212657	358.28314		14.926514	-0.0018852	-9.3588E-05	0.0010806	NaN	3.2116	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16075			18831	1299	10778	11120							-0.005354450451022785
NWARRFPWVSA	11	Unmodified	_NWARRFPWVSA_					0	0	0		ENST00000368339.9_2_1:155658267-155658399:-|nuORF	ENST00000368339.9_2_1:155658267-155658399:-|nuORF	ENST00000368339.9_2_1:155658267-155658399:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.3623703499002	2	695.36237	1388.71019	1.8128	0.0012606	-9.8279	-0.0068339	-8.015	-0.0055734	695.3558093043954	26.07	0.14483	26.07	26.022	26.167	0	1074	52	0.9754029	0.031111658	0.9754029	394.56174	0	12.584991						158	7	4	NaN	NaN	NaN	0.76654	1	19974	19974		2.5994	0	1	11876			18832	6629	10779	11121	14967	14967					0.03138108022767483
NWDSVTSTF	9	Unmodified	_NWDSVTSTF_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.4632661859998	1	1056.46327	1055.45599	2.3298	0.0024614	-2.5494	-0.0026934	-0.21958	-0.00023197	1056.4604511973707	26.36	0.096527	26.36	26.336	26.432	0	195	61	1.5033154	0.03546369	1.5033154	305.00253	0	7.195099						118	5	2	NaN	NaN	NaN	0.13602	1	10863	10863		30.61	8.4838	1	11778			18833	2164	10780	11122	14968	14968					-0.06952003587093714
NWFISSDETF	10	Unmodified	_NWFISSDETF_					0	0	0			REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.27476062755	2	623.274761	1244.53497	1.0924	0.00068084	-6.5138	-0.0040599	-5.4214	-0.003379	623.2707068195896	19.322	0.21631	19.308	19.236	19.452	-0.014141	1191	73	0.90387505	0.044095516	0.9023556	366.04517	0	17.857513						425	10	4	NaN	NaN	NaN	0.37681	1	16879	16879		24.562	0.16177	1	51096	+		18834	12407	10781	11123	14969	14969					-0.0775177635282489
NWFISSDETF	10	Unmodified						0	0	0			REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	REV__ENST00000484058.1_1_X:118540546-118586853:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.274761	1244.53497	1.0924	0.00068084	-6.5138	-0.0040599	-5.4214	-0.003379	623.2707068195896	19.322	0.21631	19.308	19.236	19.452	-0.014141	1191	73	0.90387505	0.044095516	0.9023556	366.04517		17.857513	0.015949	-0.00052672	-0.00075972	NaN	24.562	425	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51096	+		18835	12407	10781	11123							-0.0775177635282489
NWICMAYYE	9	Unmodified	_NWICMAYYE_					0	0	0		ENSG00000151033|ENST00000647634|LYZL2;ENSG00000120563|ENST00000649382|LYZL1;nc|ENSG00000151033|Q7Z4W2-2|LYZL2;nc|ENSG00000120563|Q6UWQ5-2|LYZL1	ENSG00000151033|ENST00000647634|LYZL2	ENSG00000151033|ENST00000647634|LYZL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.16491050393336	3	398.164911	1191.4729	0.60805	0.00024211	4.1306	0.0016447	4.7387	0.0018868	398.5014846963887	30.97	0.096556	30.97	30.946	31.042	0	1488	34	0.7209441	0.020433784	0.7209441	438.1542	0	12.41864						85	5	3	NaN	NaN	NaN	0.61852	1	16175	16175		4.7291	0.48018	1	6052.5			18836	2265	10782	11124	14970	14970					-0.11517542297133332
NWIKCFDIPKY	11	Unmodified	_NWIKCFDIPKY_					0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.2444407664333	3	476.244441	1425.71149	1.3339	0.00063527	-6.3309	-0.0030151	-4.997	-0.0023798	476.2410790031205	23.223	0.096518	23.21	23.186	23.283	-0.013294	1371	76	0.79324204	0.04623437	0.7917226	481.18692	0	28.046143						121	5	2	NaN	NaN	NaN	0.71564	1	19297	19297		9.5854	7.3465	1	15041	+		18837	9889	10783	11125	14971	14971					0.015665612766269987
NWIKCFDIPKY	11	Unmodified						0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	476.244441	1425.71149	1.3339	0.00063527	-6.3309	-0.0030151	-4.997	-0.0023798	476.2410790031205	23.223	0.096518	23.21	23.186	23.283	-0.013294	1371	76	0.79324204	0.04623437	0.7917226	481.18692		28.046143	0.0413	0.00075877	0.00016527	NaN	9.5854	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15041	+		18838	9889	10783	11125							0.015665612766269987
NWKHTRPCL	9	Unmodified	_NWKHTRPCL_					0	0	0		chr10:104076429-104080622|111|15.75|0.05|8.36|-|1|COL17A1,COL17A1|3;chr10:104076429-104078542|263|56.12|0.26|7.77|-|1|COL17A1,COL17A1|1	chr10:104076429-104080622|111|15.75|0.05|8.36|-|1|COL17A1,COL17A1|3	chr10:104076429-104080622|111|15.75|0.05|8.36|-|1|COL17A1,COL17A1|3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7980173563501	2	577.798017	1153.58148	1.9953	0.0011529	6.407	0.003702	8.4023	0.0048549	578.3025051943212	16.611	0.095934	16.598	16.55	16.645	-0.012993	1218	40	0.8873258	0.023917377	0.8858064	359.65378	0	9.694275						79	5	2	NaN	NaN	NaN	0.59509	1	14440	14440		5.6942	1.7661	1	6345.3			18839	116	10784	11126	14972	14972					0.010834297881501698
NWLKIDPVN	9	Unmodified	_NWLKIDPVN_					0	0	0		nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2	nc|ENSG00000170558|P19022-2|CDH2	nc|ENSG00000170558|P19022-2|CDH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.8695912375666	3	366.869591	1097.58694	1.7563	0.00064433	-2.0095	-0.00073724	-0.25327	-9.2915E-05	366.8684033671984	16.854	0.095896	16.854	16.83	16.925	0	1419	37	0.76361835	0.022239447	0.76361835	464.54288	0	13.529266						103	5	3	NaN	NaN	NaN	0.23112	1	12757	12757		15.822	7.5444	1	9557.9			18840	4736	10785	11127	14973	14973					0.04205431851596586
NWPSRPYLF	9	Unmodified	_NWPSRPYLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.30091579855	2	590.300916	1178.58728	2.3455	0.0013845	-2.7696	-0.0016349	-0.42417	-0.00025039	590.2995470159212	26.143	0.31375	26.143	26.07	26.384	0	1191	88	0.90387505	0.05330801	0.90387505	366.26978	0	21.601593						741	14	5	NaN	NaN	NaN	0.084037	1	15786	15786		38.131	15.013	1	233660			18841	2576	10786	11128	14974	14974					0.005128515714659443
NWPSRPYLF	9	Unmodified						0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.300916	1178.58728	1.9617	0.001158	-3.1284	-0.0018467	-1.1667	-0.00068869	590.2992309197385	26.167	0.26541	26.156	26.107	26.373	-0.011135	1188	112	0.90571284	0.067999065	0.9041934	367.0145		27.554688	0.0063968	-0.00018195	0.00015919	NaN	38.131	710	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238660			18842	2576	10786	11128							0.005128515714659443
NWRSTDFSDYS	11	Unmodified	_NWRSTDFSDYS_					0	0	0			REV__ENST00000498519.5_1_11:70544286-70653194:-|nuORF	REV__ENST00000498519.5_1_11:70544286-70653194:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.86171257906676	3	459.861713	1376.56331	0.86449	0.00039755	-6.8254	-0.0031387	-5.9609	-0.0027412	459.8573825105738	34.033	0.096577	34.032	33.984	34.08	-0.0012474	1386	31	0.78399014	0.018510759	0.7824707	475.73752	0	11.2326355						64	5	2	NaN	NaN	NaN	0.76654	1	18924	18924		0.88464	0.50429	1	5314.4	+		18843	12508	10787	11129	14975	14975					-0.10991078443498736
NWTTAAPLLL	10	Unmodified	_NWTTAAPLLL_					0	0	0		ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.6146218706	1	1099.61462	1098.60735	1.0551	0.0011603	0.78333	0.00086137	1.8385	0.0020216	1099.6146879841265	33.19	0.072395	33.19	33.166	33.238	0	87	70	1.5670487	0.0406214	1.5670487	317.77194	0	8.237366						132	4	2	NaN	NaN	NaN	0.68669	1	12805	12805		8.962	4.0522	1	10416			18844	2868	10788	11130	14976	14976					0.06198602511426543
NWTTAAPLLL	10	Unmodified	_NWTTAAPLLL_					0	0	0		ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.3109491686001	2	550.310949	1098.60735	1.3352	0.00073477	-5.9027	-0.0032483	-4.5675	-0.0025135	550.3075132079108	33.189	0.072411	33.186	33.162	33.235	-0.0024796	1221	37	0.885486	0.02208358	0.88396657	359.1202	0	8.956268						54	4	2	NaN	NaN	NaN	0.76892	1	12472	12472		3.2116	0.7501	1	4268.5			18845	2868	10788	11130	14977	14977					0.06198602511426543
NWTTAAPLLL	10	Unmodified						0	0	0		ENST00000464953.2_1_2:11927207-11932234:+|nuORF;nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	ENST00000464953.2_1_2:11927207-11932234:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1099.61462	1098.60735	1.5074	0.0016575	-0.89359	-0.00098261	0.61378	0.00067492	1099.6135534305488	33.189	0.072411	33.186	33.162	33.235	-0.0024796	81	67	1.5705823	0.03885734	1.5690628	318.4885		7.879669	-0.0019056	-0.0011089	0.0010071	NaN	8.962	114	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8945.2			18846	2868	10788	11130							0.06198602511426543
NWTWMKLE	8	Unmodified	_NWTWMKLE_					0	0	0		chr8:122487466-122567577|179|10.42|0.51|4.35|-|2|TE_info:L1PA7,L1PA7_dup7028,L1,LINE,acceptor,-,122487167,122487466|None,LINC01151|2	chr8:122487466-122567577|179|10.42|0.51|4.35|-|2|TE_info:L1PA7,L1PA7_dup7028,L1,LINE,acceptor,-,122487167,122487466|None,LINC01151|2	chr8:122487466-122567577|179|10.42|0.51|4.35|-|2|TE_info:L1PA7,L1PA7_dup7028,L1,LINE,acceptor,-,122487167,122487466|None,LINC01151|2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2682270741501	2	554.268227	1106.5219	1.1582	0.00064193	2.8322	0.0015698	3.9904	0.0022118	554.2695064811265	14.62	0.16768	14.609	14.513	14.68	-0.011218	1266	61	0.85786515	0.036861658	0.8563457	347.88736	0	14.948395						215	8	3	NaN	NaN	NaN	0.65542	1	12753	12753		21.835	1.3863	1	42195			18847	153	10789	11131	14978	14978					-0.027098859458874358
NWVKQYEE	8	Unmodified	_NWVKQYEE_					0	0	0			REV__ENSG00000059378|ENST00000263549|PARP12	REV__ENSG00000059378|ENST00000263549|PARP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2589135981001	2	548.258914	1094.50327	1.5371	0.00084273	-6.8149	-0.0037363	-5.2778	-0.0028936	548.7553603162221	19.684	0.096054	19.684	19.636	19.732	0	1272	55	0.854179	0.033168256	0.854179	346.43936	0	13.452454						123	5	3	NaN	NaN	NaN	0.81251	1	12591	12591		7.5404	1.2902	1	10897	+		18848	8516	10790	11132	14979	14979					-0.04019724316094653
NWVTGVVAYL	10	Unmodified	_NWVTGVVAYL_					0	0	0			REV__nc|ENSG00000066230|P48764-2|SLC9A3	REV__nc|ENSG00000066230|P48764-2|SLC9A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.53784157986667	3	374.537842	1120.5917	2.018	0.00075581	-2.1	-0.00078654	-0.082047	-3.073E-05	374.53723321987206	18.772	0.072008	18.772	18.748	18.82	0	1449	43	0.74507743	0.025974154	0.74507743	453.1484	0	15.797211						88	4	3	NaN	NaN	NaN	0.65442	1	13709	13709		6.1406	1.5232	1	7765.4	+		18849	8543	10791	11133	14980	14980					0.036223159943801875
NWVTVIVNL	9	Unmodified	_NWVTVIVNL_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.6040571843	1	1057.60406	1056.59678	1.2311	0.001302	-2.9456	-0.0031153	-1.7145	-0.0018132	1057.6012950485872	33.842	0.096519	33.842	33.817	33.914	0	108	91	1.5546752	0.053026676	1.5546752	315.4183	0	10.75824						225	5	3	NaN	NaN	NaN	0.21199	1	10957	10957		24.562	0	1	27985	+		18850	10136	10792	11134	14981	14981					0.0707461985698501
NWYKHANI	8	Unmodified	_NWYKHANI_					0	0	0			REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.264333327	2	523.264333	1044.51411	1.8433	0.00096454	-9.1666	-0.0047966	-7.3233	-0.003832	523.2600079330242	25.781	0.096519	25.781	25.757	25.853	0	1275	52	0.85233563	0.031340897	0.85233563	345.89734	0	12.718842						121	5	3	NaN	NaN	NaN	0.80692	1	10391	10391		8.2903	0.74991	1	12259	+		18851	8700	10793	11135	14982	14982					-0.0063627715114762395
NWYKHANI	8	Unmodified						0	0	0			REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.264333	1044.51411	1.8433	0.00096454	-9.1666	-0.0047966	-7.3233	-0.003832	523.2600079330242	25.781	0.096519	25.781	25.757	25.853	0	1275	52	0.85233563	0.031340897	0.85233563	345.89734		12.718842	0	0	0	NaN	8.2903	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12259	+		18852	8700	10793	11135							-0.0063627715114762395
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.4781879687	1	999.478188	998.470912	2.2123	0.0022111	0.0039462	3.9442E-06	2.2162	0.0022151	999.4775561975677	26.529	0.26549	26.529	26.481	26.746	0	234	85	1.4802408	0.04974401	1.4802408	300.54205	0	10.0998535						523	12	3	NaN	NaN	NaN	5.9172E-26	1	8517	8517		172.82	122.99	1	121600			18853	4402	10794	11136	14983	14983					-0.028385117190964593
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.4781879687	1	999.478188	998.470912	1.6915	0.0016906	1.1123	0.0011117	2.8038	0.0028023	999.4780719372528	26.529	0.31369	26.518	26.47	26.783	-0.010645	231	85	1.4820169	0.04974401	1.4804975	300.90265	0	10.0998535						493	14	3	NaN	NaN	NaN	6.1965E-18	1	8335	8335		158.26	116.47	1	123780			18854	4402	10794	11136	14984	14984					-0.028385117190964593
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2776376675	2	540.277638	1078.54072	1.4294	0.00077226	-2.7065	-0.0014623	-1.2771	-0.00069	540.2759289743921	20.573	0.19253	20.573	20.501	20.694	0	1248	64	0.8689189	0.038685918	0.8689189	352.4824	0	15.693176						245	9	4	NaN	NaN	NaN	0.059222	1	11915	11915		42.995	12.385	1	38331			18855	3195	10795	11137	14985	14985					0.004593669495079666
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2776376675	2	540.277638	1078.54072	1.1026	0.0005957	-1.9142	-0.0010342	-0.81162	-0.0004385	540.2767465212305	20.574	0.19273	20.559	20.487	20.68	-0.014086	1251	67	0.8670771	0.040530264	0.8655577	351.73526	0	16.441345						235	9	3	NaN	NaN	NaN	0.04743	1	11608	11608		48.002	14.577	1	37784			18856	3195	10795	11137	14986	14986					0.004593669495079666
NYAEIEELL	9	Unmodified	_NYAEIEELL_					0	0	0			REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D	REV__nc|ENSG00000137872|Q8NFY4-7|SEMA6D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2742293113001	2	547.274229	1092.53391	1.8486	0.0010117	-5.2297	-0.0028621	-3.381	-0.0018503	547.2702719185493	23.441	0.14481	23.427	23.379	23.524	-0.013294	1266	61	0.85786515	0.036861658	0.8563457	347.94217	0	14.950745						130	7	3	NaN	NaN	NaN	0.25448	1	12186	12186		21.835	1.3217	1	17530	+		18857	9700	10796	11138	14987	14987					-0.008659907216951979
NYAELWENSFF	11	Unmodified	_NYAELWENSFF_					0	0	0		ENST00000575955.1_1_17:4120189-4167236:-|nuORF	ENST00000575955.1_1_17:4120189-4167236:-|nuORF	ENST00000575955.1_1_17:4120189-4167236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3144171043	2	710.314417	1418.61428	1.0704	0.0007603	-2.5876	-0.001838	-1.5172	-0.0010777	710.3140052060453	34.855	0.048233	34.855	34.831	34.879	0	1071	31	0.977233	0.018301904	0.977233	395.21985	0	7.4017944						37	3	2	NaN	NaN	NaN	0.16151	1	20211	20211		33.907	22.737	1	2606.7			18858	7660	10797	11139	14988	14988					-0.0782812939867199
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.77693917575	2	525.776939	1049.53933	1.1928	0.00062717	-1.5072	-0.00079243	-0.31431	-0.00016526	525.7764639286294	29.329	0.12065	29.329	29.305	29.425	0	1251	64	0.8670771	0.038677573	0.8670771	351.8578	0	15.695251						163	6	3	NaN	NaN	NaN	0.059222	1	10615	10615		42.995	18.433	1	21542			18859	2759	10798	11140	14989	14989					0.016537328607682866
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5466018849	1	1050.5466	1049.53933	1.9235	0.0020207	2.0313	0.0021339	3.9548	0.0041547	1051.551088270403	29.329	0.096521	29.329	29.305	29.401	0	105	52	1.5564433	0.030056357	1.5564433	315.8044	0	6.09848						95	5	2	NaN	NaN	NaN	0.054111	1	10616	10616		45.165	28.581	1	10704			18860	2759	10798	11140	14990	14990					0.016537328607682866
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.77693917575	2	525.776939	1049.53933	0.92937	0.00048864	-0.053601	-2.8182E-05	0.87577	0.00046046	525.7775283699863	29.328	0.14477	29.32	29.296	29.441	-0.0077209	1251	58	0.8670771	0.034986377	0.8655577	351.8578	0	14.197388						174	7	3	NaN	NaN	NaN	0.026295	1	10394	10394		63.958	38.997	1	19906			18861	2759	10798	11140	14991	14991					0.016537328607682866
NYAENILTL	9	Unmodified	_NYAENILTL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5466018849	1	1050.5466	1049.53933	1.3113	0.0013776	3.9949	0.0041968	5.3062	0.0055744	1050.5533904933538	29.352	0.12064	29.344	29.296	29.417	-0.0077209	99	94	1.5599792	0.05485511	1.5584598	316.52182	0	11.130188						201	6	2	NaN	NaN	NaN	0.2345	1	10397	10397		23.118	3.954	1	18789			18862	2759	10798	11140	14992	14992					0.016537328607682866
NYAFKIYDF	9	Unmodified	_NYAFKIYDF_					0	0	0		nc|ENSG00000136425|O75838-4|CIB2;nc|ENSG00000136425|O75838-3|CIB2;ENSG00000136425|ENST00000258930|CIB2;nc|ENSG00000136425|O75838-2|CIB2	nc|ENSG00000136425|O75838-4|CIB2	nc|ENSG00000136425|O75838-4|CIB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.7873068968	2	590.787307	1179.56006	1.3785	0.0008144	0.29026	0.00017148	1.6688	0.00098588	590.7879521038273	27.036	0.2896	27.036	26.915	27.205	0	1209	85	0.892844	0.051461518	0.892844	361.7963	0	20.853119						429	13	4	NaN	NaN	NaN	0.022082	1	15810	15810		69.363	42.067	1	70622			18863	3017	10799	11141	14993	14993					-0.022536767595738638
NYAFKIYDF	9	Unmodified	_NYAFKIYDF_					0	0	0		nc|ENSG00000136425|O75838-4|CIB2;nc|ENSG00000136425|O75838-3|CIB2;ENSG00000136425|ENST00000258930|CIB2;nc|ENSG00000136425|O75838-2|CIB2	nc|ENSG00000136425|O75838-4|CIB2	nc|ENSG00000136425|O75838-4|CIB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.7873068968	2	590.787307	1179.56006	0.91644	0.00054142	1.4047	0.0008299	2.3212	0.0013713	590.7889338244303	27.06	0.24136	27.049	26.953	27.194	-0.010126	1209	82	0.892844	0.049631655	0.8913246	361.7963	0	20.111603						470	11	4	NaN	NaN	NaN	0.026469	1	15228	15228		63.731	39.33	1	68355			18864	3017	10799	11141	14994	14994					-0.022536767595738638
NYAGAPIG	8	Unmodified	_NYAGAPIG_					0	0	0			REV__ENSG00000144668|ENST00000264741|ITGA9	REV__ENSG00000144668|ENST00000264741|ITGA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.3780799936001	1	762.37808	761.370804	1.9074	0.0014542	-5.645	-0.0043037	-3.7376	-0.0028495	762.3729912321716	29.98	0.096531	29.98	29.932	30.029	0	996	55	1.0229213	0.032847762	1.0229213	208.56844	0	6.69751						91	5	2	NaN	NaN	NaN	0.84692	1	4226	4226		1.4396	1.0439	1	5366.2	+		18865	9907	10800	11142	14995	14995					-0.019427042622396584
NYAGRWDVLI	10	Unmodified	_NYAGRWDVLI_					0	0	0		nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.8169300035	2	603.81693	1205.61931	1.0521	0.00063529	-7.4634	-0.0045065	-6.4113	-0.0038712	603.8141930448444	27.036	0.07242	27.036	27.012	27.084	0	1176	58	0.9130621	0.034895778	0.9130621	369.8966	0	14.136871						137	4	3	NaN	NaN	NaN	0.41241	1	16628	16628		23.086	11.037	1	14888			18866	1526	10801	11143	14996	14996					0.024722192546050792
NYAIDTCLPI	10	Unmodified	_NYAIDTCLPI_					0	0	0			REV__ENSG00000180340|ENST00000315323|FZD2	REV__ENSG00000180340|ENST00000315323|FZD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7786245849501	2	561.778625	1121.5427	0.96474	0.00054197	0.40787	0.00022913	1.3726	0.0007711	561.7797396335474	33.068	0.096359	33.066	33.018	33.114	-0.0024796	1224	61	0.883646	0.036813855	0.88212657	358.28314	0	14.926514						111	5	2	NaN	NaN	NaN	0.75966	1	13335	13335		3.9685	0.7569	1	16075	+		18867	10116	10802	11144	14997	14997					-0.013213403568897775
NYAIFDEGHML	11	Unmodified	_NYAIFDEGHML_					0	0	0		ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000163104|ENST00000354268|SMARCAD1	ENSG00000163104|ENST00000354268|SMARCAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.2977127951001	2	655.297713	1308.58087	0.94192	0.00061724	-2.277	-0.0014921	-1.3351	-0.00087486	655.2959504248266	26.529	0.12066	26.518	26.446	26.566	-0.010645	1113	64	0.9515937	0.038490057	0.95007426	385.1629	0	15.579071						156	6	3	NaN	NaN	NaN	0.66717	1	18071	18071		9.6116	2.6273	1	14695			18868	4201	10803	11145	14998	14998					-0.061074544422126564
NYALKMFLY	9	Unmodified	_NYALKMFLY_					0	0	0		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.8019027160001	2	581.801903	1161.58925	2.0402	0.001187	-1.7975	-0.0010458	0.24274	0.00014122	581.8003304751493	28.194	0.12065	28.194	28.17	28.291	0	1206	70	0.894683	0.042283356	0.894683	362.60632	0	17.137024						203	6	4	NaN	NaN	NaN	0.39244	1	15210	15210		14.042	1.0388	1	30531			18869	385	10804	11146	14999	14999					0.014921442650575045
NYAMVALL	8	Unmodified	_NYAMVALL_					0	0	0			REV__OR1F1|p.D121N|1|0.39|ENSG00000168124|chr16:3204607-3204607|G/A|missense_variant	REV__OR1F1|p.D121N|1|0.39|ENSG00000168124|chr16:3204607-3204607|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.7413138319001	2	447.741314	893.468075	1.5345	0.00068705	-10.127	-0.0045341	-8.592	-0.003847	447.7371813225794	15.604	0.14392	15.592	15.544	15.688	-0.012201	1404	73	0.77288127	0.04443556	0.7713618	314.3418	0	18.07257						147	7	3	NaN	NaN	NaN	0.72043	1	5862	5862		17.78	3.7387	1	13144	+		18870	13277	10805	11147	15000	15000					0.01707941622407816
NYAPAFTML	9	Unmodified	_NYAPAFTML_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.4917295429	1	1027.49173	1026.48445	2.0663	0.0021231	1.0683	0.0010977	3.1346	0.0032208	1027.4924128126595	30.246	0.19306	30.246	30.149	30.342	0	183	103	1.510409	0.06031382	1.510409	306.55325	0	12.241333						268	9	3	NaN	NaN	NaN	0.036546	1	9622	9622		52.624	27.663	1	36468			18871	5791	10806	11148	15001	15001					-0.027729772114980733
NYAPAFTML	9	Unmodified	_NYAPAFTML_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.4917295429	1	1027.49173	1026.48445	1.0717	0.0011012	1.0251	0.0010533	2.0969	0.0021545	1027.4920411108749	30.221	0.21717	30.214	30.118	30.335	-0.0064106	183	109	1.510409	0.06386173	1.5088896	306.55325	0	12.961395						324	10	3	NaN	NaN	NaN	0.026295	1	9431	9431		63.958	40.624	1	38841			18872	5791	10806	11148	15002	15002					-0.027729772114980733
NYAPAFTML	9	Oxidation (M)	_NYAPAFTM(Oxidation (M))L_		NYAPAFTM(1)L		NYAPAFTM(130)L	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1043.486644165	1	1043.48664	1042.47937	1.8702	0.0019515	-8.6637	-0.0090405	-6.7935	-0.0070889	1043.475039208756	26.529	0.12068	26.529	26.529	26.65	0	186	145	1.5086359	0.08516705	1.5086359	306.13113	0	17.282043						286	6	3	NaN	NaN	NaN	6.5392E-05	1	10306	10306		125.02	85.561	1	34546			18873	5791	10806	11149	15003	15003		593			-0.040172810741296416
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7929235909501	2	548.792924	1095.57129	1.5274	0.0008382	-4.2596	-0.0023376	-2.7323	-0.0014994	548.7902245573322	22.453	0.16857	22.453	22.38	22.549	0	1233	73	0.87812483	0.04417187	0.87812483	356.147	0	17.91507						163	8	2	NaN	NaN	NaN	0.094712	1	12657	12657		36.586	16.138	1	45443			18874	3007	10807	11150	15004	15004					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7929235909501	2	548.792924	1095.57129	1.265	0.00069422	-4.189	-0.0022989	-2.924	-0.0016047	548.7903758989696	22.476	0.21704	22.462	22.438	22.655	-0.013733	1236	73	0.876284	0.0441671	0.8747646	355.40042	0	17.913147						206	6	4	NaN	NaN	NaN	0.011942	1	12331	12331		87.021	49.718	1	45061			18875	3007	10807	11150	15005	15005					0.027331453345595946
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D	nc|ENSG00000167552|Q71U36-2|TUBA1A	nc|ENSG00000167552|Q71U36-2|TUBA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7725224998501	2	547.772522	1093.53049	2.0376	0.0011161	-1.6695	-0.00091452	0.36807	0.00020162	547.7714011066581	13.901	0.31213	13.901	13.853	14.165	0	1203	70	0.8965218	0.042310774	0.8965218	363.61682	0	17.160675						499	14	4	NaN	NaN	NaN	2.212E-07	1	12541	12541		133.34	83.51	1	121070			18876	2376	10808	11151	15006	15006					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D	nc|ENSG00000167552|Q71U36-2|TUBA1A	nc|ENSG00000167552|Q71U36-2|TUBA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.5174404887667	3	365.51744	1093.53049	1.6078	0.00058768	-2.3794	-0.00086971	-0.77159	-0.00028203	365.51659839853335	14.021	0.14392	14.01	13.938	14.082	-0.010672	1518	43	0.7023569	0.026036322	0.70083743	427.2944	0	15.839752						148	7	2	NaN	NaN	NaN	0.31737	1	12221	12221		11.739	4.1513	1	20815			18877	2376	10808	11151	15007	15007					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D	nc|ENSG00000167552|Q71U36-2|TUBA1A	nc|ENSG00000167552|Q71U36-2|TUBA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7725224998501	2	547.772522	1093.53049	1.5274	0.00083669	-1.4354	-0.00078627	0.092032	5.0413E-05	547.7716847604505	14.045	0.35956	14.034	13.914	14.274	-0.010672	1203	43	0.8965218	0.025741875	0.89500237	363.61682	0	10.440552						438	16	3	NaN	NaN	NaN	0.0042638	1	12222	12222		104.2	64.045	1	104530			18878	2376	10808	11151	15008	15008					-0.012531959850548446
NYASTFTWW	9	Unmodified	_NYASTFTWW_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1175.5156361075	1	1175.51564	1174.50836	2.3313	0.0027405	-0.53468	-0.00062852	1.7967	0.002112	1175.514690037108	32.804	0.072369	32.804	32.756	32.828	0	60	82	1.582944	0.0476861	1.582944	320.7377	0	9.662201						244	4	4	NaN	NaN	NaN	0.013696	1	15622	15622		81.699	47.261	1	38205			18879	581	10809	11152	15009	15009					-0.07191420453455066
NYASTFTWW	9	Unmodified	_NYASTFTWW_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1175.5156361075	1	1175.51564	1174.50836	1.6932	0.0019904	1.256	0.0014764	2.9491	0.0034668	1176.5195129441963	32.875	0.28944	32.872	32.751	33.041	-0.0031052	60	67	1.582944	0.038845062	1.5814246	320.7377	0	7.870819						349	13	3	NaN	NaN	NaN	0.04743	1	15067	15067		48.002	27.554	1	37736			18880	581	10809	11152	15010	15010					-0.07191420453455066
NYATIVVGF	9	Unmodified	_NYATIVVGF_					0	0	0		nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5196588529002	1	983.519659	982.512382	1.9797	0.0019471	-5.1502	-0.0050653	-3.1705	-0.0031183	983.5137817727394	29.811	0.096561	29.811	29.787	29.884	0	234	70	1.4802408	0.04084599	1.4802408	300.60855	0	8.295044						109	5	2	NaN	NaN	NaN	0.13602	1	7966	7966		30.61	12.811	1	12319			18881	1390	10810	11153	15011	15011					0.02042669040247347
NYATIVVGF	9	Unmodified						0	0	0		nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	983.519659	982.512382	1.4334	0.0014097	-3.1389	-0.0030871	-1.7055	-0.0016774	983.5172389256034	29.811	0.096516	29.803	29.779	29.876	-0.0070648	231	73	1.4820169	0.042610645	1.4804975	300.96924		8.653412	-0.0039724	0.00097764	0.00012833	NaN	30.61	152	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12887			18882	1390	10810	11153							0.02042669040247347
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.8007486230501	2	525.800749	1049.58694	1.6599	0.00087278	-2.3896	-0.0012565	-0.72975	-0.0003837	525.7994854646628	21.73	0.12037	21.73	21.705	21.826	0	1254	52	0.8652351	0.031317174	0.8652351	351.11014	0	12.708405						178	6	4	NaN	NaN	NaN	0.017791	1	10632	10632		74.794	36.663	1	58253			18883	2037	10811	11154	15012	15012					0.06413431851638052
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.8007486230501	2	525.800749	1049.58694	1.2952	0.00068104	-1.3328	-0.00070077	-0.03752	-1.9728E-05	525.8000200183747	21.753	0.14442	21.74	21.715	21.86	-0.013895	1254	55	0.8652351	0.033161104	0.86371565	351.1101	0	13.456696						201	7	4	NaN	NaN	NaN	0.055363	1	10412	10412		44.633	25.515	1	62164			18884	2037	10811	11154	15013	15013					0.06413431851638052
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	0.61707	0.00037937	-2.1901	-0.0013465	-1.5731	-0.00096711	615.2939760711216	34.951	0.096443	34.951	34.855	34.951	0	1155	40	0.92591566	0.023860574	0.92591566	375.02786	0	9.664398						48	5	2	NaN	NaN	NaN	0.60063	1	17177	17177		5.4659	3.2895	1	3193.4			18885	2241	10812	11155	15014	15014					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	1.8253	0.0011222	-1.3991	-0.00086017	0.42618	0.00026201	614.7917761784548	26.795	0.8693	26.795	26.722	27.591	0	1146	400	0.93142134	0.24356323	0.93142134	377.25784	0	98.65152						3529	37	4	NaN	NaN	NaN	0.029744	1	17178	17178		59.445	14.807	1	6258000			18886	2241	10812	11155	15015	15015					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	1.2154	0.00074724	-0.21116	-0.00012982	1.0043	0.00061742	614.7920086629455	26.746	0.048279	26.746	26.698	26.746	0	1143	88	0.9332562	0.053227544	0.9332562	378.001	0	21.55899						111	3	2	NaN	NaN	NaN	0.021781	1	17179	17179		69.745	26.75	1	221930			18887	2241	10812	11155	15016	15016					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	1.0751	0.00066097	0.2505	0.000154	1.3256	0.00081498	614.7931489962548	36.88	0.048096	36.88	36.856	36.904	0	1161	31	0.9222442	0.018353343	0.9222442	373.54077	0	7.4337463						39	3	2	NaN	NaN	NaN	0.36886	1	17180	17180		15.013	11.801	1	2062.6			18888	2241	10812	11155	15017	15017					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	1.6038	0.00098603	0.4283	0.00026331	2.0321	0.0012493	615.2944177361924	28.001	0.26545	28.001	27.953	28.219	0	1146	73	0.93142134	0.044043243	0.93142134	377.25784	0	17.83902						314	12	2	NaN	NaN	NaN	0.021781	1	17183	17183		69.745	41.956	1	362200			18889	2241	10812	11155	15018	15018					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7929235909501	2	614.792924	1227.57129	0.45666	0.00028075	4.2454	0.0026101	4.7021	0.0028908	614.7956432955064	31.525	0.36203	31.525	31.284	31.646	0	1182	85	0.9093879	0.051422596	0.9093879	368.3335	0	20.827942						548	16	3	NaN	NaN	NaN	0.11855	1	17184	17184		33.137	24.892	1	108590			18890	2241	10812	11155	15019	15019					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	0.63965	0.00039325	-1.6862	-0.0010367	-1.0466	-0.00064343	614.7917590061976	27.687	0.096497	27.677	27.605	27.702	-0.009552	1149	73	0.92958635	0.04405749	0.9280669	376.5146	0	17.844818						139	5	2	NaN	NaN	NaN	0.13477	1	16482	16482		30.791	14.207	1	55002			18891	2241	10812	11155	15020	15020					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	2.1168	0.0013014	-2.2338	-0.0013733	-0.11694	-7.1896E-05	614.7913886652002	26.818	0.96535	26.808	26.59	27.556	-0.010645	1143	445	0.9332562	0.27136987	0.93173677	378.001	0	109.914185						3825	41	4	NaN	NaN	NaN	0.032417	1	16483	16483		55.947	13.63	1	6398800			18892	2241	10812	11155	15021	15021					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	1.2042	0.00074036	-1.1594	-0.00071279	0.044844	2.757E-05	614.7920880949563	28.266	0.4585	28.257	28.161	28.619	-0.0089779	1146	94	0.93142134	0.056898355	0.9299019	377.25784	0	23.045837						836	20	5	NaN	NaN	NaN	0.021781	1	16484	16484		69.745	44.784	1	459070			18893	2241	10812	11155	15022	15022					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	0.64134	0.00039429	0.13329	8.1943E-05	0.77462	0.00047623	615.2938297621853	29.038	0.048256	29.031	28.982	29.031	-0.0077229	1155	76	0.92591566	0.04589075	0.9243962	375.02783	0	18.587341						106	3	2	NaN	NaN	NaN	0.11467	1	16485	16485		33.698	18.844	1	38122			18894	2241	10812	11155	15023	15023					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	0.73158	0.00044977	1.1981	0.00073659	1.9297	0.0011864	615.2960247085415	35.938	0.1687	35.94	35.819	35.988	0.0011024	1155	40	0.92591566	0.02386576	0.9243962	375.02783	0	9.666473						117	8	2	NaN	NaN	NaN	0.58547	1	16487	16487		6.0903	2.937	1	8100.9			18895	2241	10812	11155	15024	15024					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	1.0482	0.00064443	1.6377	0.0010068	2.6859	0.0016513	614.7942326240508	28.073	0.16891	28.064	27.943	28.112	-0.0089779	1146	97	0.93142134	0.058749676	0.9299019	377.25784	0	23.795654						335	8	5	NaN	NaN	NaN	0.026791	1	16489	16489		63.31	34.815	1	299300			18896	2241	10812	11155	15025	15025					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7929235909501	2	614.792924	1227.57129	0.2963	0.00018216	5.4339	0.0033407	5.7302	0.0035229	614.7966566245095	31.838	0.28955	31.833	31.785	32.074	-0.0044155	1179	94	0.9112251	0.05693525	0.90970564	369.07764	0	23.06076						593	13	4	NaN	NaN	NaN	0.24994	1	16490	16490		22.126	9.1235	1	83956			18897	2241	10812	11155	15026	15026					-0.03338854665435065
NYAWVYYHL	9	Unmodified						0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	614.792924	1227.57129	0.82371	0.00050641	-2.423	-0.0014896	-1.5993	-0.00098321	615.2936616898986	29.232	0.096527	29.232	29.184	29.28	0	1146	70	0.93142134	0.04220581	0.93142134	377.25784		17.094818	0.10079	-0.001486	0.0035126	NaN	33.698	120	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32260			18898	2241	10812	11155							-0.03338854665435065
NYAWVYYHL	9	Unmodified						0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.792924	1227.57129	0.78603	0.00048324	-3.9917	-0.002454	-3.2056	-0.0019708	614.7910969911582	34.709	0.1205	34.708	34.66	34.78	-0.00064468	1158	58	0.92408	0.034884453	0.9225606	374.28436		14.129425	-0.12159	-0.00084397	-0.0016775	NaN	5.4659	135	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13665			18899	2241	10812	11155							-0.03338854665435065
NYAWVYYHL	9	Unmodified						0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.792924	1227.57129	1.6278	0.0010008	1.9418	0.0011938	3.5696	0.0021946	614.7933292942265	36.613	0.096363	36.615	36.567	36.663	0.0016785	1158	28	0.92408	0.01651889	0.9225606	374.28433		6.690735	-0.13256	0.00093757	0.00015819	NaN	15.013	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3173.1			18900	2241	10812	11155							-0.03338854665435065
NYAWVYYHL	9	Unmodified						0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.792924	1227.57129	0.32295	0.00019855	4.7344	0.0029107	5.0574	0.0031092	614.7959401966176	31.693	0.26553	31.688	31.519	31.785	-0.0044174	1179	82	0.9112251	0.049572706	0.90970564	369.07764		20.078674	0.081739	0.00023404	0.00015889	NaN	33.137	402	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126620			18901	2241	10812	11155							-0.03338854665435065
NYAWVYYHM	9	Unmodified	_NYAWVYYHM_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.77113390385	2	623.771134	1245.52771	2.0538	0.0012811	0.92291	0.00057569	2.9767	0.0018568	623.7720067899016	25.322	0.21717	25.322	25.202	25.419	0	1146	94	0.93142134	0.056886137	0.93142134	377.19736	0	23.03717						414	10	5	NaN	NaN	NaN	0.026791	1	17644	17644		63.31	25.179	1	184370			18902	2242	10813	11156	15027	15027					-0.0852278743423085
NYAWVYYHM	9	Unmodified	_NYAWVYYHM_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.77113390385	2	623.771134	1245.52771	1.6993	0.00106	1.1565	0.00072142	2.8558	0.0017814	623.7728212935017	25.322	0.26535	25.31	25.214	25.479	-0.012011	1146	103	0.93142134	0.062387884	0.9299019	377.19736	0	25.265198						538	12	5	NaN	NaN	NaN	0.021781	1	16899	16899		69.745	41.249	1	205440			18903	2242	10813	11156	15028	15028					-0.0852278743423085
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(63)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.7685912149	2	631.768591	1261.52263	2.1595	0.0013643	-1.6558	-0.0010461	0.50375	0.00031825	631.7678581994828	22.477	0.40981	22.477	22.38	22.79	0	1158	88	0.92408	0.053204536	0.92408	374.17233	0	21.543243						969	18	4	NaN	NaN	NaN	0.026791	1	18019	18019		63.31	31.749	1	333370			18904	2242	10813	11157	15029	15029		259			-0.09767091296862418
NYAWVYYHM	9	Oxidation (M)	_NYAWVYYHM(Oxidation (M))_		NYAWVYYHM(1)		NYAWVYYHM(81)	0	0	1		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.7685912149	2	631.768591	1261.52263	1.7876	0.0011294	-1.2907	-0.0008154	0.49699	0.00031398	631.7679748058185	22.5	0.38569	22.486	22.39	22.776	-0.013731	1161	100	0.9222442	0.060556173	0.92072475	373.429	0	24.52002						1223	17	5	NaN	NaN	NaN	0.013926	1	17239	17239		81.001	44.766	1	400750			18905	2242	10813	11157	15030	15030		259			-0.09767091296862418
NYCGVRIIH	9	Unmodified	_NYCGVRIIH_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7792932869501	2	537.779293	1073.54403	1.6314	0.00087733	-9.0147	-0.0048479	-7.3833	-0.0039706	538.2745578697991	15.7	0.23973	15.687	15.591	15.831	-0.012612	1494	55	0.7172283	0.033442557	0.71570885	290.96524	0	13.566956						270	11	3	NaN	NaN	NaN	0.66529	1	11409	11409		2.1763	0.47414	1	27129			18906	5926	10814	11158	15031	15031					0.010203385225395323
NYCGVRIIH	9	Unmodified						0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.779293	1073.54403	1.8091	0.00097291	-8.5978	-0.0046237	-6.7887	-0.0036508	538.2744288479219	15.462	0.16815	15.462	15.438	15.606	0	1497	49	0.71537006	0.029733181	0.71537006	290.2114		12.062164	-0.1127	0.00026152	-0.00016939	NaN	2.1763	223	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25224			18907	5926	10814	11158							0.010203385225395323
NYDAALRKI	9	Unmodified	_NYDAALRKI_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2983731096001	2	532.298373	1062.58219	1.9481	0.001037	-5.4785	-0.0029162	-3.5305	-0.0018793	532.2956274993744	16.71	0.095922	16.71	16.686	16.782	0	1230	55	0.8799654	0.033121705	0.8799654	357.0311	0	13.438599						88	5	2	NaN	NaN	NaN	0.097143	1	11248	11248		36.235	20.772	1	18660			18908	166	10815	11159	15032	15032					0.05340547708851773
NYDAALRKI	9	Unmodified	_NYDAALRKI_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2983731096001	2	532.298373	1062.58219	1.1778	0.00062694	-8.1953	-0.0043624	-7.0175	-0.0037354	532.2923652847044	16.778	0.095848	16.765	16.717	16.813	-0.013294	1230	79	0.8799654	0.047858	0.878446	357.03113	0	19.417572						170	5	3	NaN	NaN	NaN	0.03533	1	10992	10992		53.14	22.53	1	24509			18909	166	10815	11159	15033	15033					0.05340547708851773
NYDEALRLL	9	Unmodified	_NYDEALRLL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7956632451501	2	553.795663	1105.57677	1.8268	0.0010117	2.0768	0.0011501	3.9036	0.0021618	553.7962690514162	26.119	0.19306	26.119	26.094	26.288	0	1215	97	0.8891654	0.058921278	0.8891654	360.58423	0	23.89441						299	9	2	NaN	NaN	NaN	0.097143	1	13088	13088		36.235	20.772	1	59639			18910	859	10816	11160	15034	15034					0.028208241263882883
NYDEALRLL	9	Unmodified	_NYDEALRLL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7956632451501	2	553.795663	1105.57677	1.9239	0.0010654	1.8625	0.0010315	3.7864	0.0020969	553.7953411059277	26.143	0.19304	26.131	26.083	26.276	-0.011137	1212	112	0.8910048	0.06810933	0.88948536	361.33017	0	27.620453						465	9	5	NaN	NaN	NaN	0.041983	1	12729	12729		50.315	17.862	1	64324			18911	859	10816	11160	15035	15035					0.028208241263882883
NYDFGPIHM	9	Unmodified	_NYDFGPIHM_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|3|fusion;MTHFD1L-RNF216|2|fusion	nc|ENSG00000011275|Q9NWF9|RNF216	nc|ENSG00000011275|Q9NWF9|RNF216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2422092889001	2	547.242209	1092.46987	1.9588	0.0010719	0.1019	5.5765E-05	2.0607	0.0011277	547.2419940576563	25.95	0.19306	25.95	25.853	26.046	0	1278	82	0.85049206	0.049744427	0.85049206	344.95193	0	20.175873						402	9	4	NaN	NaN	NaN	0.089764	1	12489	12489		37.302	15.176	1	59844			18912	404	10817	11161	15036	15036					-0.07267049359643352
NYDFGPIHM	9	Unmodified	_NYDFGPIHM_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|3|fusion;MTHFD1L-RNF216|2|fusion	nc|ENSG00000011275|Q9NWF9|RNF216	nc|ENSG00000011275|Q9NWF9|RNF216	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2422092889001	2	547.242209	1092.46987	2.1766	0.0011911	0.26923	0.00014733	2.4459	0.0013385	547.242190760666	25.974	0.24136	25.962	25.865	26.107	-0.0116	1278	85	0.85049206	0.051584005	0.8489726	344.95193	0	20.921997						409	11	4	NaN	NaN	NaN	0.032417	1	12174	12174		55.947	25.337	1	60044			18913	404	10817	11161	15037	15037					-0.07267049359643352
NYDIVSAKT	9	Unmodified	_NYDIVSAKT_					0	0	0		tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	tr|U7SNR0|U7SNR0_FUSNUBiotin-[acetyl-CoA-carboxylase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01913PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5153017565002	1	1010.5153	1009.50803	1.7064	0.0017244	6.8302	0.0069021	8.5367	0.0086264	1010.522655960509	29.811	0.096556	29.811	29.763	29.86	0	174	88	1.5157272	0.051435947	1.5157272	307.70117	0	10.441772						131	5	2	NaN	NaN	NaN	0.16171	1	8957	8957		27.789	5.9538	1	10737			18914	13792	10818	11162	15038	15038					0.0036515982668561264
NYDKVEKLF	9	Unmodified	_NYDKVEKLF_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3058637907001	2	578.305864	1154.59717	1.9367	0.00112	-3.2015	-0.0018514	-1.2647	-0.00073141	578.3036361633841	19.876	0.12024	19.876	19.852	19.972	0	1188	85	0.90571284	0.05144483	0.90571284	367.10272	0	20.851562						174	6	2	NaN	NaN	NaN	0.10206	1	14975	14975		35.523	16.187	1	23247			18915	5009	10819	11163	15039	15039					0.02605994786199517
NYDLALKYF	9	Unmodified	_NYDLALKYF_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7951319289	2	573.795132	1145.57571	1.2903	0.00074038	0.15255	8.7534E-05	1.4429	0.00082792	573.7953651144446	27.108	0.26545	27.098	27.025	27.291	-0.010126	1191	88	0.90387505	0.053302348	0.9023556	366.39185	0	21.606445						636	12	4	NaN	NaN	NaN	0.0098181	1	14163	14163		92.758	60.305	1	254330			18916	778	10820	11164	15040	15040					0.008746097574658052
NYDRYLEKAEQ	11	Unmodified	_NYDRYLEKAEQ_					0	0	0			REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.8413303465501	2	714.84133	1427.66811	1.3948	0.00099708	-0.89416	-0.00063918	0.50067	0.0003579	715.3416348237447	26.818	0.072412	26.808	26.783	26.856	-0.010645	1050	43	0.9900381	0.025592387	0.9885187	400.37408	0	10.349609						58	4	2	NaN	NaN	NaN	0.65577	1	19303	19303		10.36	2.7726	1	4602.5	+		18917	10675	10821	11165	15041	15041					-0.0286195696694449
NYDRYLEKAEQ	11	Unmodified						0	0	0			REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	714.84133	1427.66811	1.0635	0.00076021	6.1115	0.0043688	7.175	0.005129	714.8458549538714	26.77	0.096968	26.77	26.77	26.867	0	1047	70	0.99186665	0.042060494	0.99186665	401.11353		17.009369	-0.018611	0.0053102	0.001674	NaN	10.36	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8133.6	+		18918	10675	10821	11165							-0.0286195696694449
NYDRYLEKAEQ	11	Unmodified						0	0	0			REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	REV__ENST00000480519.5_1_1:231114875-231124103:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	714.84133	1427.66811	1.3948	0.00099708	-0.89416	-0.00063918	0.50067	0.0003579	715.3416348237447	26.818	0.072412	26.808	26.783	26.856	-0.010645	1050	43	0.9900381	0.025592387	0.9885187	400.37408		10.349609	0.018611	-0.0047057	-0.001674	NaN	10.36	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4602.5	+		18919	10675	10821	11165							-0.0286195696694449
NYEDHFPLL	9	Unmodified	_NYEDHFPLL_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2745636623001	2	574.274564	1146.53457	1.3143	0.00075477	-1.6127	-0.00092613	-0.2984	-0.00017136	574.2742990630373	26.867	0.19301	26.867	26.843	27.036	0	1182	70	0.9093879	0.042278767	0.9093879	368.62286	0	17.137817						160	9	2	NaN	NaN	NaN	0.041983	1	14679	14679		50.315	26.981	1	24904			18920	2409	10822	11166	15042	15042					-0.032831512819939235
NYEDYFPEI	9	Unmodified	_NYEDYFPEI_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1189.5047966497	1	1189.5048	1188.49752	2.8437	0.0033826	-1.2978	-0.0015438	1.5458	0.0018388	1189.5035937651292	30.125	0.12067	30.125	30.101	30.222	0	63	49	1.5811787	0.028244972	1.5811787	320.33615	0	5.722229						127	6	2	NaN	NaN	NaN	0.042816	1	16096	16096		49.961	26.627	1	12022			18921	5402	10823	11167	15043	15043					-0.08918867618422155
NYEDYFPEI	9	Unmodified	_NYEDYFPEI_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1189.5047966497	1	1189.5048	1188.49752	1.7312	0.0020592	-1.5963	-0.0018987	0.1349	0.00016047	1189.503099232417	30.124	0.072399	30.118	30.094	30.166	-0.0064106	57	55	1.5847093	0.03178227	1.5831898	321.05145	0	6.438904						104	4	3	NaN	NaN	NaN	0.53317	1	15485	15485		8.2448	5.3553	1	8328.1			18922	5402	10823	11167	15044	15044					-0.08918867618422155
NYENKQYLF	9	Unmodified	_NYENKQYLF_					0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.7931205562	2	609.793121	1217.57169	1.0433	0.00063617	-3.3775	-0.0020596	-2.3342	-0.0014234	610.2921728760218	20.887	0.21667	20.887	20.814	21.031	0	1161	64	0.9222442	0.03856486	0.9222442	373.5749	0	15.6215515						343	10	4	NaN	NaN	NaN	0.33629	1	16927	16927		16.584	2.5426	1	63848			18923	3977	10824	11168	15045	15045					-0.02839479736235262
NYENKQYLF	9	Unmodified						0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.793121	1217.57169	0.69039	0.00042099	0.23981	0.00014623	0.9302	0.00056723	609.7954322214154	21.128	0.19265	21.114	21.041	21.234	-0.014004	1167	67	0.91857195	0.040394723	0.9170525	372.08737		16.362762	0.11346	0.0037607	-0.0025958	NaN	16.584	181	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20809			18924	3977	10824	11168							-0.02839479736235262
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.7536610447	2	619.753661	1237.49277	0.93161	0.00057737	-0.32349	-0.00020049	0.60812	0.00037688	619.7533074378998	30.68	0.19307	30.68	30.632	30.825	0	1179	79	0.9112251	0.047754705	0.9112251	369.04474	0	19.340576						346	9	4	NaN	NaN	NaN	0.02857	1	17455	17455		60.982	25.685	1	57301			18925	4156	10825	11169	15046	15046					-0.11647751761188374
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.7536610447	2	619.753661	1237.49277	0.68673	0.0004256	-0.27841	-0.00017255	0.40832	0.00025306	619.7533779896352	30.655	0.21713	30.649	30.625	30.842	-0.0057545	1176	85	0.9130621	0.05142814	0.91154265	369.78873	0	20.828339						360	10	4	NaN	NaN	NaN	0.03618	1	16727	16727		52.78	34.81	1	69319			18926	4156	10825	11169	15047	15047					-0.11647751761188374
NYFESTDGLIW	11	Unmodified	_NYFESTDGLIW_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.8089675856501	2	672.808968	1343.60338	0.98078	0.00065988	-2.088	-0.0014048	-1.1073	-0.00074497	672.8083847134211	32.852	0.16893	32.852	32.804	32.973	0	1125	61	0.9442611	0.036655188	0.9442611	382.09088	0	14.832367						258	8	4	NaN	NaN	NaN	0.085722	1	19468	19468		40.957	25.494	1	28781			18927	5958	10826	11170	15048	15048					-0.05467531772956136
NYFESTDGLIW	11	Unmodified	_NYFESTDGLIW_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.8089675856501	2	672.808968	1343.60338	0.77211	0.00051949	-3.2097	-0.0021595	-2.4376	-0.00164	672.8071232587642	32.851	0.12066	32.848	32.8	32.92	-0.0031052	1122	49	0.9460945	0.029330492	0.9445751	382.8328	0	11.868439						205	6	4	NaN	NaN	NaN	0.21983	1	18602	18602		28.495	13.033	1	26057			18928	5958	10826	11170	15049	15049					-0.05467531772956136
NYFEVPLPYF	10	Unmodified	_NYFEVPLPYF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.8160643362501	2	644.816064	1287.61758	1.6448	0.0010606	-1.7536	-0.0011308	-0.10888	-7.0205E-05	644.8154485891579	37.097	0.19287	37.097	37.024	37.217	0	1146	97	0.93142134	0.058679998	0.93142134	377.06216	0	23.755096						593	9	4	NaN	NaN	NaN	0.00071861	1	18558	18558		90.252	71.088	1	83768			18929	4261	10827	11171	15050	15050					-0.014728345540106602
NYFEVPLPYF	10	Unmodified	_NYFEVPLPYF_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.8160643362501	2	644.816064	1287.61758	1.5422	0.00099445	-2.0471	-0.00132	-0.50489	-0.00032556	644.8144814987961	37.094	0.19258	37.096	37.024	37.217	0.0022507	1146	91	0.93142134	0.055018425	0.9299019	377.06216	0	22.272797						402	9	4	NaN	NaN	NaN	0.0014599	1	17731	17731		87.778	68.442	1	52064			18930	4261	10827	11171	15051	15051					-0.014728345540106602
NYFFDAAKLMF	11	Unmodified	_NYFFDAAKLMF_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.82864878275	2	683.828649	1365.64274	1.0165	0.00069514	-2.5584	-0.0017495	-1.5419	-0.0010544	683.8275575258782	33.383	0.096523	33.383	33.359	33.456	0	1101	43	0.95892316	0.02564758	0.95892316	387.96005	0	10.376465						136	5	3	NaN	NaN	NaN	0.20668	1	19747	19747		29.706	21.461	1	12200			18931	2198	10828	11172	15052	15052					-0.025451030231124605
NYFFDAAKLMF	11	Unmodified	_NYFFDAAKLMF_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.82864878275	2	683.828649	1365.64274	0.9364	0.00064034	-3.7214	-0.0025448	-2.785	-0.0019045	684.3264033811263	33.454	0.096512	33.452	33.404	33.501	-0.0018501	1101	49	0.95892316	0.029308379	0.9574037	387.96008	0	11.857544						92	5	2	NaN	NaN	NaN	0.17797	1	18827	18827		32.377	21.412	1	9160.1			18932	2198	10828	11172	15053	15053					-0.025451030231124605
NYFHLAVAF	9	Unmodified	_NYFHLAVAF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.276909386	2	541.276909	1080.53927	1.7849	0.00096614	0.30917	0.00016734	2.0941	0.0011335	541.2768134588033	28.412	0.1448	28.412	28.339	28.484	0	1233	85	0.87812483	0.051544964	0.87812483	356.20853	0	20.909027						199	7	3	NaN	NaN	NaN	0.014943	1	12005	12005		78.398	57.842	1	54520			18933	2879;3714;7410;3598	10829	11173	15054	15054					0.0022177765142714634
NYFILESQHT	10	Unmodified	_NYFILESQHT_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.303852418	2	626.303852	1250.59315	1.5007	0.0009399	-5.8997	-0.003695	-4.399	-0.0027551	626.7998918477396	27.639	0.096479	27.639	27.591	27.688	0	1155	49	0.92591566	0.02936846	0.92591566	374.95108	0	11.892822						193	5	4	NaN	NaN	NaN	0.21251	1	17782	17782		34.454	9.892	1	30756			18934	4246	10830	11174	15055	15055					-0.022120947075336517
NYFLLSSSM	9	Unmodified	_NYFLLSSSM_					0	0	0		nc|ENSG00000131725|Q5JSH3-3|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2522426589501	2	531.252243	1060.48993	1.8621	0.00098923	-5.6799	-0.0030175	-3.8178	-0.0020282	531.2501927661065	30.198	0.12065	30.198	30.173	30.294	0	1296	49	0.8394264	0.02951163	0.8394264	340.59167	0	11.974152						107	6	3	NaN	NaN	NaN	0.41766	1	11104	11104		13.003	3.2568	1	8390.6			18935	2721	10831	11175	15056	15056					-0.03789298419678744
NYFLLSSSM	9	Unmodified						0	0	0		nc|ENSG00000131725|Q5JSH3-3|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	nc|ENSG00000131725|Q5JSH3-3|WDR44	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.252243	1060.48993	0.60506	0.00032144	-6.5477	-0.0034785	-5.9427	-0.003157	531.7496135517393	30.221	0.19303	30.214	30.142	30.335	-0.0064106	1290	55	0.84311575	0.033196986	0.8415963	342.08862		13.469482	0.0083712	-0.00042802	0.001085	NaN	13.003	139	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12741			18936	2721	10831	11175							-0.03789298419678744
NYFLWTEKF	9	Unmodified	_NYFLWTEKF_					0	0	0		ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	ENSG00000100351|ENST00000344138|GRAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.30840647965	2	624.308406	1246.60226	1.7784	0.0011103	-3.2826	-0.0020493	-1.5042	-0.00093906	624.3063380390714	28.581	0.24131	28.581	28.532	28.774	0	1140	91	0.93509084	0.05506593	0.93509084	378.6798	0	22.299835						251	11	2	NaN	NaN	NaN	0.00065562	1	17680	17680		115.07	70.431	1	139630			18937	1234	10832	11176	15057	15057					-0.011177013511996847
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.8242237193501	2	618.824224	1235.63389	0.93945	0.00058136	-2.2487	-0.0013916	-1.3093	-0.00081022	618.8230106717032	35.868	0.31336	35.868	35.747	36.061	0	1158	70	0.92408	0.04221493	0.92408	374.2572	0	17.09726						365	14	3	NaN	NaN	NaN	0.14916	1	17423	17423		55.413	36.249	1	46826			18938	958	10833	11177	15058	15058					0.025502914027583756
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.8242237193501	2	618.824224	1235.63389	0.86008	0.00053224	0.019034	1.1778E-05	0.87911	0.00054402	619.3261938597003	35.892	0.24096	35.892	35.771	36.012	0	1230	49	0.8799654	0.029441535	0.8799654	356.39053	0	11.923981						234	11	3	NaN	NaN	NaN	0.05951	1	17424	17424		55.413	22.96	1	23782			18939	958	10833	11177	15059	15059					0.025502914027583756
NYFPGGVALIW	11	Unmodified	_NYFPGGVALIW_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.8242237193501	2	618.824224	1235.63389	0.51641	0.00031957	-0.86275	-0.00053389	-0.34634	-0.00021432	619.3254419116856	35.866	0.2169	35.867	35.771	35.988	0.0011024	1155	70	0.92591566	0.0422104	0.9243962	375.00064	0	17.095428						269	10	4	NaN	NaN	NaN	0.025235	1	16691	16691		79.199	64.345	1	31209			18940	958	10833	11177	15060	15060					0.025502914027583756
NYFSLLRGL	9	Unmodified	_NYFSLLRGL_					0	0	0			REV__tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	REV__tr|U7SGL7|U7SGL7_FUSNUD-lactatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02234PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.8032913120002	2	541.803291	1081.59203	1.5814	0.00085681	0.99437	0.00053876	2.5758	0.0013956	541.8038586775364	27.808	0.096514	27.808	27.784	27.881	0	1251	46	0.8670771	0.027629793	0.8670771	351.72272	0	11.207794						89	5	2	NaN	NaN	NaN	0.35794	1	12063	12063		15.463	2.4598	1	9327.8	+		18941	13387	10834	11178	15061	15061					0.05449735714250892
NYFTGVFAF	9	Unmodified	_NYFTGVFAF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5040087887	1	1065.50401	1064.49673	2.3022	0.002453	0.31292	0.00033341	2.6151	0.0027864	1065.504429224688	34.421	0.38591	34.421	34.372	34.758	0	99	133	1.5599792	0.077830195	1.5599792	316.46414	0	15.78894						1070	17	5	NaN	NaN	NaN	2.6074E-07	1	11321	11321		131.88	91.723	1	456940			18942	766	10835	11179	15062	15062					-0.032936174768110504
NYFTGVFAF	9	Unmodified	_NYFTGVFAF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5040087887	1	1065.50401	1064.49673	0.72379	0.0007712	1.1293	0.0012033	1.8531	0.0019745	1065.505574707573	35.698	0.36168	35.698	35.505	35.867	0.00053024	99	58	1.5599792	0.033588886	1.5584598	316.46414	0	6.813965						369	16	3	NaN	NaN	NaN	0.00017726	1	11059	11059		118.2	71.068	1	35285			18943	766	10835	11179	15063	15063					-0.032936174768110504
NYFTGVFAF	9	Unmodified	_NYFTGVFAF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5040087887	1	1065.50401	1064.49673	1.6639	0.0017729	0.68148	0.00072612	2.3454	0.002499	1065.5047203950937	34.419	0.36167	34.419	34.37	34.732	-0.00064468	96	172	1.5617468	0.10089505	1.5602274	316.82272	0	20.467987						1090	16	4	NaN	NaN	NaN	6.1965E-18	1	11060	11060		158.26	100.02	1	459690			18944	766	10835	11179	15064	15064					-0.032936174768110504
NYGDELLL	8	Unmodified	_NYGDELLL_					0	0	0			REV__ENSG00000105550|ENST00000593756|FGF21	REV__ENSG00000105550|ENST00000593756|FGF21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4672889314003	1	936.467289	935.460012	1.5109	0.0014149	0.19602	0.00018356	1.7069	0.0015985	936.4670418758141	28.942	0.24134	28.933	28.885	29.127	-0.0083485	336	61	1.419741	0.035648704	1.4182216	288.52267	0	7.2445984						325	11	5	NaN	NaN	NaN	0.098732	1	6596	6596		64.55	9.0563	1	37773	+		18945	8963	10836	11180	15065	15065					-0.010299140933511808
NYGDIELL	8	Unmodified	_NYGDIELL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4672889314	1	936.467289	935.460012	1.4689	0.0013756	-0.88582	-0.00082954	0.58311	0.00054607	936.4669564945724	28.943	0.26548	28.943	28.894	29.16	0	339	61	1.4179583	0.035648704	1.4179583	288.1604	0	7.2445984						301	12	4	NaN	NaN	NaN	0.087315	1	6732	6732		67.154	11.661	1	33181			18946	5616	10837	11181	15066	15066					-0.010299140933739181
NYGDIELL	8	Unmodified						0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.467289	935.460012	1.5109	0.0014149	0.19602	0.00018356	1.7069	0.0015985	936.4670418758141	28.942	0.24134	28.933	28.885	29.127	-0.0083485	336	61	1.419741	0.035648704	1.4182216	288.52267		7.2445984	-0.0045442	0.00047837	0.00013164	NaN	67.154	325	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37773			18947	5616	10837	11181							-0.010299140933739181
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2714896571	2	542.27149	1082.52843	1.3949	0.00075641	-10.77	-0.0058404	-9.3754	-0.005084	542.2647824153495	34.348	0.26527	34.348	34.203	34.469	0	1284	94	0.8468043	0.05713862	0.8468043	343.49554	0	23.177582						288	12	3	NaN	NaN	NaN	0.089764	1	12084	12084		37.302	12.341	1	29199			18948	5616	10838	11182	15067	15067					-0.009536695135238915
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5357028475999	1	1083.5357	1082.52843	1.7361	0.0018811	0.57097	0.00061866	2.3071	0.0024998	1083.5365332942526	34.348	0.24119	34.348	34.3	34.541	0	96	100	1.5617468	0.058338642	1.5617468	316.7552	0	11.832306						694	11	4	NaN	NaN	NaN	0.0034808	1	12091	12091		106.56	48.322	1	203150			18949	5616	10838	11182	15068	15068					-0.009536695135238915
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5357028475999	1	1083.5357	1082.52843	1.623	0.0017586	-0.010968	-1.1884E-05	1.612	0.0017467	1083.535399397311	34.347	0.2651	34.346	34.298	34.563	-0.0012474	96	112	1.5617468	0.06543076	1.5602274	316.7552	0	13.270752						773	12	5	NaN	NaN	NaN	0.0034808	1	11776	11776		106.56	51.064	1	209620			18950	5616	10838	11182	15069	15069					-0.009536695135238915
NYGDYFNVF	9	Unmodified	_NYGDYFNVF_					0	0	0		SETX-EIF3B|1|fusion;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX-EIF3B|1|fusion	SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.4840016281	1	1138.484	1137.47673	1.9803	0.0022545	-0.22604	-0.00025734	1.7543	0.0019972	1138.4835055607512	31.356	0.4103	31.356	31.284	31.694	0	93	103	1.5635144	0.06009686	1.5635144	316.92075	0	12.181519						904	18	5	NaN	NaN	NaN	0.011693	1	14356	14356		87.778	54.353	1	275870			18951	1630	10839	11183	15070	15070					-0.08651413207417136
NYGDYFNVF	9	Unmodified	_NYGDYFNVF_					0	0	0		SETX-EIF3B|1|fusion;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX-EIF3B|1|fusion	SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1138.4840016281	1	1138.484	1137.47673	1.473	0.001677	-0.24176	-0.00027524	1.2312	0.0014017	1138.483767967134	31.331	0.38612	31.326	31.277	31.664	-0.0050716	90	112	1.5652816	0.06541693	1.5637622	317.27896	0	13.259857						902	17	5	NaN	NaN	NaN	0.017076	1	13885	13885		75.698	49.584	1	274040			18952	1630	10839	11183	15071	15071					-0.08651413207417136
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.25871663285	2	535.258717	1068.50288	2.1767	0.0011651	-0.70736	-0.00037862	1.4694	0.0007865	535.257900538272	22.356	0.19273	22.356	22.332	22.525	0	1257	85	0.86339295	0.051567256	0.86339295	350.28223	0	20.921051						343	9	3	NaN	NaN	NaN	0.12945	1	11484	11484		31.561	9.7261	1	106240			18953	722	10840	11184	15072	15072					-0.028630992453145154
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.25871663285	2	535.258717	1068.50288	1.0794	0.00057775	1.1087	0.00059344	2.1881	0.0011712	535.2591808344871	22.38	0.19265	22.366	22.342	22.535	-0.013733	1260	79	0.8615505	0.047878683	0.8600311	349.53476	0	19.424591						384	9	3	NaN	NaN	NaN	0.078597	1	11207	11207		38.918	18.362	1	111790			18954	722	10840	11184	15073	15073					-0.028630992453145154
NYGLRTFLF	9	Unmodified	_NYGLRTFLF_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.803291312	2	565.803291	1129.59203	1.874	0.0010603	-2.5825	-0.0014612	-0.70851	-0.00040088	565.801885724273	28.894	0.16893	28.894	28.822	28.991	0	1209	67	0.892844	0.040451527	0.892844	361.98126	0	16.400055						299	8	4	NaN	NaN	NaN	0.045904	1	14071	14071		48.65	20.861	1	85569			18955	2626	10841	11185	15074	15074					0.032417357142321634
NYGLRTFLF	9	Unmodified	_NYGLRTFLF_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.803291312	2	565.803291	1129.59203	1.1796	0.00066745	-1.3941	-0.00078881	-0.21449	-0.00012136	565.8028543428882	28.942	0.2896	28.933	28.837	29.127	-0.0083485	1209	76	0.892844	0.045970082	0.8913246	361.98126	0	18.637451						370	13	4	NaN	NaN	NaN	0.026443	1	13623	13623		63.765	29.326	1	94610			18956	2626	10841	11185	15075	15075					0.032417357142321634
NYGPGHGY	8	Unmodified	_NYGPGHGY_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	864.3634925619001	1	864.363493	863.356216	1.0096	0.00087269	-7.899	-0.0068276	-6.8893	-0.0059549	864.3564504113123	29.521	0.26541	29.514	29.466	29.731	-0.0070648	420	58	1.3697531	0.033976436	1.3682337	278.70108	0	6.9131165						283	12	3	NaN	NaN	NaN	0.69631	1	5436	5436		19.285	10.994	1	26186			18957	2976	10842	11186	15076	15076					-0.08092776410376246
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.27710635125	2	596.277106	1190.53966	0.80493	0.00047996	-1.9035	-0.001135	-1.0986	-0.00065505	596.2755965262654	33.118	0.31372	33.118	33.021	33.335	0	1215	94	0.8891654	0.056978285	0.8891654	360.26724	0	23.086182						455	14	3	NaN	NaN	NaN	0.014046	1	16159	16159		80.639	54.524	1	74807			18958	1742	10843	11187	15077	15077					-0.04798847419397134
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1191.5469362359	1	1191.54694	1190.53966	2.0158	0.0024019	-0.28645	-0.00034132	1.7294	0.0020606	1191.5461507897855	33.094	0.1689	33.094	33.069	33.238	0	60	61	1.582944	0.03530991	1.582944	320.6875	0	7.1534424						211	8	3	NaN	NaN	NaN	0.023828	1	16161	16161		67.154	27	1	21102			18959	1742	10843	11187	15078	15078					-0.04798847419397134
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.27710635125	2	596.277106	1190.53966	0.61823	0.00036864	-2.1655	-0.0012912	-1.5472	-0.00092258	596.2759208168803	33.116	0.26526	33.114	33.018	33.283	-0.0024757	1212	67	0.8910048	0.040447116	0.88948536	361.01254	0	16.388153						425	12	5	NaN	NaN	NaN	0.13602	1	15545	15545		30.61	13.752	1	74195			18960	1742	10843	11187	15079	15079					-0.04798847419397134
NYGQYFTLW	9	Unmodified	_NYGQYFTLW_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1191.5469362359	1	1191.54694	1190.53966	1.4948	0.0017812	-2.6864	-0.003201	-1.1916	-0.0014198	1191.5444906915648	33.116	0.072346	33.114	33.066	33.138	-0.0024757	60	52	1.582944	0.030011892	1.5814246	320.6875	0	6.0801086						119	4	3	NaN	NaN	NaN	0.27608	1	15546	15546		20.449	3.8645	1	12957			18961	1742	10843	11187	15080	15080					-0.04798847419397134
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2723553243501	2	579.272355	1156.53016	2.5239	0.001462	0.73516	0.00042586	3.259	0.0018879	579.2718724928502	23.272	0.36175	23.272	23.176	23.538	0	1236	94	0.876284	0.057039917	0.876284	355.16763	0	23.118896						779	16	4	NaN	NaN	NaN	2.0056E-07	1	15032	15032		165.93	86.731	1	328170			18962	1962	10844	11188	15081	15081					-0.04184615704912176
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000473417.5_1_3:125188296-125239016:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2723553243501	2	579.272355	1156.53016	2.3079	0.0013369	1.1772	0.00068191	3.4851	0.0020188	579.2719045455341	23.32	0.3378	23.307	23.21	23.548	-0.013296	1233	91	0.87812483	0.05519694	0.8766054	355.91373	0	22.371918						891	15	4	NaN	NaN	NaN	0.017836	1	14530	14530		93.929	52.144	1	341730			18963	1962	10844	11188	15082	15082					-0.04184615704912176
NYGTIKWFF	9	Unmodified	_NYGTIKWFF_					0	0	0		ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7	ENSG00000089041|ENST00000328963|P2RX7	ENSG00000089041|ENST00000328963|P2RX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.29784179335	2	588.297842	1174.58113	1.8974	0.0011162	0.42752	0.00025151	2.3249	0.0013677	588.298191181036	29.908	0.19306	29.908	29.836	30.029	0	1206	43	0.894683	0.025744617	0.894683	362.55927	0	10.432678						229	9	4	NaN	NaN	NaN	0.31471	1	15632	15632		17.97	8.2237	1	35992			18964	1029	10845	11189	15083	15083					0.0008233333992393455
NYGTIKWFF	9	Unmodified	_NYGTIKWFF_					0	0	0		ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7	ENSG00000089041|ENST00000328963|P2RX7	ENSG00000089041|ENST00000328963|P2RX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.29784179335	2	588.297842	1174.58113	0.90997	0.00053534	2.6212	0.001542	3.5311	0.0020774	588.3004200183346	29.955	0.16893	29.949	29.901	30.07	-0.0064106	1206	43	0.894683	0.025744617	0.89316356	362.55923	0	10.432709						211	8	3	NaN	NaN	NaN	0.13196	1	15075	15075		31.198	21.452	1	36681			18965	1029	10845	11189	15084	15084					0.0008233333992393455
NYGVVESF	8	Unmodified	_NYGVVESF_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.4254241167001	1	914.425424	913.418148	1.5261	0.0013955	0.80075	0.00073223	2.3269	0.0021278	914.425881829338	24.213	0.19309	24.213	24.164	24.357	0	378	58	1.3947657	0.0339185	1.3947657	283.54636	0	6.8954163						205	9	2	NaN	NaN	NaN	0.021034	1	6293	6293		91.429	41.596	1	31814			18966	5601	10846	11190	15085	15085					-0.04202469781898799
NYGVVESF	8	Unmodified	_NYGVVESF_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4254241167001	1	914.425424	913.418148	1.5795	0.0014443	0.30038	0.00027467	1.8798	0.001719	914.4259163808056	24.212	0.1931	24.199	24.175	24.368	-0.012749	375	64	1.3965509	0.03749287	1.3950315	283.90927	0	7.62204						187	9	2	NaN	NaN	NaN	7.3104E-06	1	6172	6172		129.63	73.68	1	29348			18967	5601	10846	11190	15086	15086					-0.04202469781898799
NYHEQAQR	8	Unmodified	_NYHEQAQR_					0	0	0			REV__ENST00000602642.1_1_16:67697561-67697729:-|nuORF	REV__ENST00000602642.1_1_16:67697561-67697729:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.24412920115	2	523.244129	1044.47371	0.86813	0.00045424	3.1143	0.0016295	3.9824	0.0020838	523.7465033949181	31.766	0.09654	31.766	31.718	31.815	0	1302	70	0.8357362	0.042434454	0.8357362	339.16104	0	17.220886						130	5	2	NaN	NaN	NaN	0.75561	1	10387	10387		15.175	2.5875	1	29652	+		18968	9366	10847	11191	15087	15087					-0.04675243541578311
NYHEQAQR	8	Unmodified						0	0	0			REV__ENST00000602642.1_1_16:67697561-67697729:-|nuORF	REV__ENST00000602642.1_1_16:67697561-67697729:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.244129	1044.47371	0.86813	0.00045424	3.1143	0.0016295	3.9824	0.0020838	523.7465033949181	31.766	0.09654	31.766	31.718	31.815	0	1302	70	0.8357362	0.042434454	0.8357362	339.16104		17.220886	0	0	0	NaN	15.175	130	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29652	+		18969	9366	10847	11191							-0.04675243541578311
NYHLLEIIL	9	Unmodified	_NYHLLEIIL_					0	0	0			REV__ENST00000395949.2_1_11:31451062-31451945:+|nuORF	REV__ENST00000395949.2_1_11:31451062-31451945:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.55349164406675	3	376.553492	1126.63865	2.5017	0.00094203	6.6847	0.0025171	9.1864	0.0034592	376.5559357651158	18.362	0.12008	18.348	18.276	18.396	-0.013948	1422	34	0.7617651	0.020385087	0.7602457	463.26752	0	12.397186						79	6	2	NaN	NaN	NaN	0.67989	1	13534	13534		0.38509	0	1	5575.5	+		18970	10605	10848	11192	15088	15088					0.08039175545536636
NYHWKVVH	8	Unmodified	_NYHWKVVH_					0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7801505667002	2	541.780151	1081.54575	1.0998	0.00059584	-2.2634	-0.0012263	-1.1636	-0.00063043	541.7775992434346	28.435	0.048283	28.426	28.402	28.45	-0.0089798	1227	76	0.88180584	0.04598999	0.8802864	357.6975	0	18.655487						85	3	2	NaN	NaN	NaN	0.80071	1	11735	11735		9.1232	0.83292	1	21398	+		18971	10145	10849	11193	15089	15089					0.008237156028144454
NYHWKVVH	8	Unmodified						0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.780151	1081.54575	1.5624	0.00084649	0.098681	5.3464E-05	1.6611	0.00089995	541.7797979265116	28.629	0.16891	28.629	28.556	28.725	0	1242	94	0.87260187	0.05708307	0.87260187	353.964		23.155273	0.10137	0.0011381	-0.0038423	NaN	9.1232	168	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23617	+		18972	10145	10849	11193							0.008237156028144454
NYHWKVVH	8	Unmodified						0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.780151	1081.54575	1.0998	0.00059584	-2.2634	-0.0012263	-1.1636	-0.00063043	541.7775992434346	28.435	0.048283	28.426	28.402	28.45	-0.0089798	1227	76	0.88180584	0.04598999	0.8802864	357.6975		18.655487	-0.10137	-0.0014213	0.0038423	NaN	9.1232	85	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21398	+		18973	10145	10849	11193							0.008237156028144454
NYIDIVKYVF	10	Unmodified	_NYIDIVKYVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3449889512001	2	637.344989	1272.67542	1.4674	0.00093526	-3.2595	-0.0020774	-1.7921	-0.0011422	637.3419641269903	32.418	0.19303	32.418	32.345	32.539	0	1119	76	0.9479278	0.04580176	0.9479278	383.79218	0	18.543976						258	9	5	NaN	NaN	NaN	0.018338	1	18278	18278		64.375	37.079	1	38759			18974	4129	10850	11194	15090	15090					0.04999427371421916
NYIDIVKYVF	10	Unmodified						0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.344989	1272.67542	1.211	0.00077181	-2.6491	-0.0016884	-1.4381	-0.00091657	637.3437138438284	32.441	0.16892	32.438	32.39	32.558	-0.0031052	1116	61	0.94976085	0.036663115	0.9482414	384.53433		14.843994	0.0099751	0.00033672	0.00015681	NaN	64.375	261	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43079			18975	4129	10850	11194							0.04999427371421916
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.88887431420005	3	389.888874	1166.64479	2.1939	0.00085536	-1.8806	-0.00073321	0.31331	0.00012216	389.8881982382238	22.79	0.31329	22.79	22.742	23.055	0	1473	169	0.7302302	0.103896976	0.7302302	443.90576	0	63.158813						926	14	6	NaN	NaN	NaN	0.028349	1	15376	15376		45.827	25.313	1	659070			18976	477	10851	11195	15091	15091					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3296732380002	2	584.329673	1166.64479	2.7786	0.0016236	-1.0535	-0.00061561	1.725	0.001008	584.3280479130327	22.79	0.33733	22.79	22.742	23.079	0	1143	142	0.9332562	0.08633989	0.9332562	378.22043	0	34.990936						929	15	5	NaN	NaN	NaN	1.7723E-07	1	15377	15377		134.97	32.927	1	830580			18977	477	10851	11195	15092	15092					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.88887431420005	3	389.888874	1166.64479	2.1467	0.00083696	-1.4047	-0.00054768	0.74196	0.00028928	389.8883422671361	22.886	0.33732	22.872	22.8	23.137	-0.01354	1476	166	0.72837335	0.10203618	0.7268539	442.777	0	62.02762						1112	15	5	NaN	NaN	NaN	0.028349	1	14843	14843		53.14	27.339	1	672740			18978	477	10851	11195	15093	15093					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3296732380002	2	584.329673	1166.64479	2.3465	0.0013711	-1.3933	-0.00081414	0.9532	0.00055698	584.3282820385698	22.886	0.4097	22.872	22.776	23.186	-0.01354	1143	121	0.9332562	0.07346094	0.93173677	378.22043	0	29.771515						1028	18	6	NaN	NaN	NaN	0.00068417	1	14844	14844		114.98	42.556	1	932830			18979	477	10851	11195	15094	15094					0.06813693777053231
NYIDRFLSS	9	Unmodified	_NYIDRFLSS_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7800131809502	2	557.780013	1113.54547	1.3108	0.00073117	-10.083	-0.005624	-8.7719	-0.0048928	558.2741603727769	21.826	0.12037	21.812	21.788	21.908	-0.013895	1224	88	0.883646	0.05337721	0.88212657	358.31442	0	21.644196						200	6	2	NaN	NaN	NaN	0.54912	1	13036	13036		7.5876	1.8934	1	28471			18980	3513	10852	11196	15095	15095					-0.006757489077017453
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8216810304001	2	584.821681	1167.62881	2.0898	0.0012221	-2.6844	-0.0015699	-0.5946	-0.00034773	584.8208270571942	27.808	0.2172	27.808	27.712	27.929	0	1170	85	0.91673553	0.051455915	0.91673553	371.52145	0	20.853333						359	10	4	NaN	NaN	NaN	0.077759	1	15410	15410		39.039	9.4408	1	92706			18981	1340	10853	11197	15096	15096					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8216810304001	2	584.821681	1167.62881	1.2704	0.00074298	-3.4545	-0.0020203	-2.184	-0.0012773	584.8210135356024	27.856	0.26548	27.846	27.726	27.991	-0.009552	1170	82	0.91673553	0.049615502	0.9152161	371.52145	0	20.107452						399	12	3	NaN	NaN	NaN	0.02431	1	14873	14873		66.544	29.957	1	98359			18982	1340	10853	11197	15097	15097					0.05169987540148213
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.8054996499501	2	524.8055	1047.59645	1.8753	0.00098415	-2.1494	-0.001128	-0.27414	-0.00014387	524.8044049273701	23.538	0.16868	23.538	23.489	23.658	0	1260	55	0.8615505	0.03316474	0.8615505	349.62354	0	13.458496						244	8	4	NaN	NaN	NaN	0.0050453	1	10547	10547		102.5	46.904	1	155020			18983	3039	10854	11198	15098	15098					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.8054996499501	2	524.8055	1047.59645	1.957	0.001027	-2.2802	-0.0011967	-0.32326	-0.00016965	524.804577232252	23.585	0.21692	23.572	23.524	23.741	-0.013048	1260	67	0.8615505	0.040530264	0.8600311	349.62354	0	16.44748						333	10	3	NaN	NaN	NaN	0.0050453	1	10331	10331		102.5	57.331	1	167460			18984	3039	10854	11198	15099	15099					0.07455200137133033
NYIEQYYPH	9	Unmodified	_NYIEQYYPH_					0	0	0			REV__ENSG00000172331|ENST00000344924|BPGM	REV__ENSG00000172331|ENST00000344924|BPGM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.777470492	2	613.77747	1225.54039	0.74677	0.00045835	-1.379	-0.00084642	-0.63226	-0.00038807	614.2765914994943	29.401	0.096582	29.401	29.401	29.498	0	1167	43	0.91857195	0.025708497	0.91857195	372.06024	0	10.413025						73	5	2	NaN	NaN	NaN	0.53206	1	17112	17112		8.2903	0.012744	1	8910.6	+		18985	10652	10855	11199	15100	15100					-0.06336052770348033
NYIEQYYPH	9	Unmodified						0	0	0			REV__ENSG00000172331|ENST00000344924|BPGM	REV__ENSG00000172331|ENST00000344924|BPGM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.77747	1225.54039	0.74677	0.00045835	-1.379	-0.00084642	-0.63226	-0.00038807	614.2765914994943	29.401	0.096582	29.401	29.401	29.498	0	1167	43	0.91857195	0.025708497	0.91857195	372.06024		10.413025	-0.14086	-0.0045496	0.00075972	NaN	8.2903	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8910.6	+		18986	10652	10855	11199							-0.06336052770348033
NYIFFTGSLW	10	Unmodified	_NYIFFTGSLW_					0	0	0		ENSG00000164893|ENST00000297524|SLC7A13;nc|ENSG00000164893|Q8TCU3-2|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3084064796501	2	624.308406	1246.60226	1.1285	0.00070455	7.7756	0.0048544	8.9041	0.0055589	624.3129324562489	29.376	0.26541	29.368	29.296	29.562	-0.0077229	1149	91	0.92958635	0.055030286	0.9280669	376.45062	0	22.2854						754	12	4	NaN	NaN	NaN	0.2358	1	16946	16946		32.453	3.9575	1	269940			18987	4352	10856	11200	15101	15101					-0.011177013511769474
NYIGISLRI	9	Unmodified	_NYIGISLRI_					0	0	0		DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.8111163441001	2	524.811116	1047.60768	1.362	0.00071481	1.0256	0.00053822	2.3876	0.001253	524.8115662672795	26.722	0.14528	26.722	26.698	26.843	0	1221	106	0.885486	0.06440687	0.885486	359.33667	0	26.13678						311	7	4	NaN	NaN	NaN	0.022082	1	10550	10550		69.363	5.6325	1	58269			18988	266	10857	11201	15102	15102					0.08578022231290561
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.3165658627502	2	538.316566	1074.61858	2.3893	0.0012862	-1.6307	-0.00087783	0.75859	0.00040836	538.3153073538069	24.96	0.3861	24.96	24.888	25.274	0	1209	118	0.892844	0.07177544	0.892844	362.20444	0	29.117493						963	17	5	NaN	NaN	NaN	3.4198E-12	1	11764	11764		150.79	59.366	1	997680			18989	603	10858	11202	15103	15103					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.3165658627502	2	538.316566	1074.61858	2.0906	0.0011254	-0.01208	-6.5028E-06	2.0785	0.0011189	538.3162364458005	24.984	0.3378	24.972	24.9	25.237	-0.012392	1212	112	0.8910048	0.06807256	0.88948536	361.4583	0	27.615326						931	15	5	NaN	NaN	NaN	4.945700000000001E-19	1	11457	11457		165.99	62.967	1	924620			18990	603	10858	11202	15104	15104					0.08425424605570697
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3162315117501	2	553.316232	1104.61791	2.105	0.0011647	-1.3593	-0.00075214	0.74566	0.00041258	553.3159231083051	25.829	0.26546	25.829	25.781	26.046	0	1155	100	0.92591566	0.060615063	0.92591566	375.49164	0	24.581573						530	12	5	NaN	NaN	NaN	0.0073245	1	13056	13056		121.66	51.877	1	288700			18991	3106	10859	11203	15105	15105					0.06978585165848017
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3162315117501	2	553.316232	1104.61791	2.4766	0.0013703	-1.6897	-0.00093492	0.78692	0.00043542	553.3155250525034	25.853	0.38617	25.841	25.745	26.131	-0.0116	1155	100	0.92591566	0.060615063	0.9243962	375.49164	0	24.581573						636	17	5	NaN	NaN	NaN	0.010203	1	12708	12708		104.2	42.927	1	301850			18992	3106	10859	11203	15106	15106					0.06978585165848017
NYIKRNWRI	9	Unmodified	_NYIKRNWRI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.575401169	3	421.575401	1261.70437	1.8482	0.00077914	-1.3785	-0.00058114	0.46967	0.000198	421.5746936155238	16.182	0.288	16.182	16.086	16.374	0	1470	97	0.7320868	0.05935031	0.7320868	444.643	0	36.04724						634	13	4	NaN	NaN	NaN	0.21451	1	18038	18038		24.4	4.8084	1	122150			18993	2404	10860	11204	15107	15107					0.08399009511072109
NYIKRNWRI	9	Unmodified	_NYIKRNWRI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.575401169	3	421.575401	1261.70437	1.4448	0.00060908	-1.8457	-0.00077812	-0.40096	-0.00016903	421.57526345846674	17.33	0.11997	17.316	17.292	17.412	-0.013567	1473	37	0.7302302	0.02227813	0.7287108	443.51538	0	13.530914						95	6	2	NaN	NaN	NaN	0.29341	1	17258	17258		19.336	11.654	1	14261			18994	2404	10860	11204	15108	15108					0.08399009511072109
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7794818647001	2	529.779482	1057.54441	1.792	0.00094938	0.18773	9.9456E-05	1.9798	0.0010488	529.7790155607858	22.236	0.12061	22.236	22.212	22.332	0	1209	97	0.892844	0.05891496	0.892844	362.2784	0	23.905182						219	6	3	NaN	NaN	NaN	0.032689	1	10994	10994		55.592	15.438	1	29611			18995	3944	10861	11205	15109	15109					0.017940367233904908
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7794818647001	2	529.779482	1057.54441	0.78269	0.00041465	-0.75429	-0.00039961	0.028397	1.5044E-05	529.7790909049609	22.259	0.16872	22.246	22.197	22.366	-0.013731	1212	88	0.8910048	0.05337721	0.88948536	361.53217	0	21.658203						222	8	3	NaN	NaN	NaN	0.017558	1	10763	10763		75.089	45.053	1	30566			18996	3944	10861	11205	15110	15110					0.017940367233904908
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.87082629403335	3	393.870826	1178.59065	1.4938	0.00058838	-2.3014	-0.00090647	-0.8076	-0.00031809	393.86961390934306	19.66	0.12007	19.66	19.636	19.756	0	1449	46	0.74507743	0.027831018	0.74507743	452.8778	0	16.916443						184	6	4	NaN	NaN	NaN	0.14301	1	15787	15787		25.801	16.189	1	24725			18997	1299	10862	11206	15111	15111					0.008497783538132353
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.3026012077501	2	590.302601	1178.59065	1.8224	0.0010758	-1.9051	-0.0011246	-0.082705	-4.8821E-05	590.3020695446844	19.66	0.16807	19.66	19.612	19.78	0	1152	52	0.92775106	0.031205654	0.92775106	375.94485	0	12.645203						268	8	5	NaN	NaN	NaN	0.032826	1	15788	15788		55.413	34.964	1	58415			18998	1299	10862	11206	15112	15112					0.008497783538132353
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3026012077501	2	590.302601	1178.59065	1.2803	0.00075574	-1.7407	-0.0010276	-0.46047	-0.00027182	590.3016287379991	19.779	0.26473	19.765	19.693	19.958	-0.014141	1152	49	0.92775106	0.02936846	0.9262317	375.94485	0	11.900726						330	12	4	NaN	NaN	NaN	0.0084155	1	15204	15204		95.62	58.317	1	61146			18999	1299	10862	11206	15113	15113					0.008497783538132353
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.87082629403335	3	393.870826	1178.59065	1.4057	0.00055367	-1.5077	-0.00059384	-0.10198	-4.0168E-05	393.87021104477043	19.803	0.14442	19.789	19.717	19.861	-0.014141	1452	40	0.74322224	0.024120152	0.7417028	451.75015	0	14.660889						137	7	2	NaN	NaN	NaN	0.094712	1	15205	15205		31.675	22.105	1	20470			19000	1299	10862	11206	15114	15114					0.008497783538132353
NYIMQSHSL	9	Unmodified	_NYIMQSHSL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7607661828001	2	546.760766	1091.50698	1.9631	0.0010734	-3.2111	-0.0017557	-1.248	-0.00068234	546.7592603157846	18.676	0.11992	18.676	18.652	18.772	0	1254	73	0.8652351	0.044219613	0.8652351	350.93546	0	17.935272						157	6	3	NaN	NaN	NaN	0.13999	1	12455	12455		30.035	6.185	1	12809			19001	3920	10863	11207	15115	15115					-0.03511377813879335
NYIMQSHSL	9	Unmodified	_NYIMQSHSL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7607661828001	2	546.760766	1091.50698	2.063	0.001128	2.3501	0.0012849	4.4131	0.0024129	547.26466332403	18.58	0.095989	18.58	18.556	18.652	0	1239	67	0.87444305	0.040521502	0.87444305	354.67014	0	16.435333						119	5	2	NaN	NaN	NaN	0.27608	1	12457	12457		20.449	3.8645	1	9869.7			19002	3920	10863	11207	15116	15116					-0.03511377813879335
NYIMQSHSL	9	Unmodified	_NYIMQSHSL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7607661828001	2	546.760766	1091.50698	1.9611	0.0010722	0.2921	0.00015971	2.2532	0.0012319	546.7593340521812	18.626	0.09602	18.612	18.564	18.66	-0.014059	1239	52	0.87444305	0.031306982	0.8729236	354.67014	0	12.697968						102	5	3	NaN	NaN	NaN	0.055351	1	12140	12140		44.638	13.077	1	8793.5			19003	3920	10863	11207	15117	15117					-0.03511377813879335
NYIMQSHSL	9	Unmodified						0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.760766	1091.50698	1.8415	0.0010068	-4.7151	-0.002578	-2.8737	-0.0015712	547.2597037691888	18.722	0.095982	18.708	18.684	18.78	-0.014059	1254	70	0.8652351	0.04237485	0.86371565	350.93546		17.187042	0.015641	-0.0009423	-0.00075972	NaN	30.035	109	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10236			19004	3920	10863	11207							-0.03511377813879335
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.31656586275	2	622.316566	1242.61858	2.3764	0.0014789	0.35843	0.00022305	2.7348	0.0017019	622.3165577292996	30.053	0.55508	30.053	29.956	30.511	0	1128	94	0.9424274	0.056886137	0.9424274	381.66428	0	23.03775						990	24	4	NaN	NaN	NaN	2.0329E-35	1	17599	17599		180.01	119.03	1	1165900			19005	946	10864	11208	15118	15118					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.31656586275	2	622.316566	1242.61858	0.32582	0.00020276	-2.3464	-0.0014602	-2.0206	-0.0012574	622.8173722546187	31.379	0.096519	31.374	31.374	31.47	-0.0050716	1149	70	0.92958635	0.04221946	0.9280669	376.4639	0	17.098053						131	5	2	NaN	NaN	NaN	0.41766	1	16853	16853		13.003	1.4544	1	23517			19006	946	10864	11208	15119	15119					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.31656586275	2	622.316566	1242.61858	1.4695	0.0009145	0.86452	0.00053801	2.334	0.0014525	622.3170262767654	30.1	0.57913	30.094	29.997	30.576	-0.0064106	1131	88	0.94059354	0.053210318	0.93907416	380.9216	0	21.549103						968	25	3	NaN	NaN	NaN	2.212E-07	1	16856	16856		133.34	83.028	1	1255400			19007	946	10864	11208	15120	15120					0.006974246055506228
NYIPRFWTF	9	Unmodified						0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.316566	1242.61858	0.70186	0.00043678	-3.8595	-0.0024018	-3.1576	-0.001965	622.3138948247484	31.211	0.12067	31.211	31.187	31.308	0	1152	70	0.92775106	0.04221946	0.92775106	375.72067		17.098053	-0.081393	-0.00080005	-0.0001579	NaN	13.003	224	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47112			19008	946	10864	11208							0.006974246055506228
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.82114971415	2	562.82115	1123.62775	2.5512	0.0014359	-0.7326	-0.00041232	1.8186	0.0010236	562.8209303041555	26.07	0.21722	26.07	26.022	26.239	0	1191	73	0.90387505	0.044128895	0.90387505	366.47696	0	17.89212						305	10	3	NaN	NaN	NaN	0.024359	1	13840	13840		66.481	27.022	1	211500			19009	5926	10865	11209	15121	15121					0.07087773171224399
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.82114971415	2	562.82115	1123.62775	2.3234	0.0013076	-1.194	-0.000672	1.1294	0.00063565	562.8205892518292	26.094	0.26544	26.083	26.035	26.3	-0.011137	1191	73	0.90387505	0.044128895	0.9023556	366.47696	0	17.89212						338	12	3	NaN	NaN	NaN	0.059222	1	13410	13410		42.995	3.536	1	218190			19010	5926	10865	11209	15122	15122					0.07087773171224399
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.4028381810999	2	700.402838	1398.79112	1.6699	0.0011696	-1.8371	-0.0012867	-0.16717	-0.00011708	700.4015670061807	26.263	0.16892	26.263	26.215	26.384	0	1005	91	1.0174452	0.05475235	1.0174452	411.5391	0	22.146362						346	8	4	NaN	NaN	NaN	0.040708	1	20060	20060		52.195	30.424	1	50542			19011	5926	10866	11210	15123	15123					0.1076795122223757
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.2709842762666	3	467.270984	1398.79112	1.7339	0.00081019	-1.8381	-0.00085891	-0.10426	-4.8717E-05	467.2702014923977	26.263	0.16892	26.263	26.215	26.384	0	1338	49	0.81357855	0.02956599	0.81357855	493.61432	0	17.938293						235	8	3	NaN	NaN	NaN	0.026113	1	20061	20061		40.033	26.395	1	72599			19012	5926	10866	11210	15124	15124					0.1076795122223757
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.4028381810999	2	700.402838	1398.79112	1.1306	0.0007919	-1.785	-0.0012502	-0.6544	-0.00045834	700.4011088560987	26.408	0.19304	26.397	26.3	26.493	-0.011137	1005	85	1.0174452	0.051096678	1.0159258	411.5391	0	20.667725						373	9	4	NaN	NaN	NaN	0.03394	1	19115	19115		54.277	26.981	1	40066			19013	5926	10866	11210	15125	15125					0.1076795122223757
NYIPYLTKLKF	11	Unmodified	_NYIPYLTKLKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.2709842762666	3	467.270984	1398.79112	0.70852	0.00033107	-1.0678	-0.00049895	-0.35927	-0.00016788	467.2701840728044	26.384	0.36193	26.373	26.276	26.638	-0.011137	1338	52	0.81357855	0.03141558	0.8120591	493.61432	0	19.060425						362	16	3	NaN	NaN	NaN	0.19064	1	19116	19116		23.591	12.123	1	75672			19014	5926	10866	11210	15126	15126					0.1076795122223757
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.80348827725	2	554.803488	1107.59242	1.495	0.00082941	-5.0665	-0.0028109	-3.5716	-0.0019815	554.8029041035775	22.019	0.19295	22.019	21.994	22.187	0	1221	73	0.885486	0.04417187	0.885486	359.0841	0	17.912659						268	9	3	NaN	NaN	NaN	0.011693	1	13186	13186		87.778	40.297	1	48428			19015	1045	10867	11211	15127	15127					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.80348827725	2	554.803488	1107.59242	1.2183	0.00067591	-6.1779	-0.0034275	-4.9596	-0.0027516	554.8028943851987	22.042	0.16858	22.029	21.981	22.149	-0.013731	1221	64	0.885486	0.038648307	0.88396657	359.0841	0	15.6727295						300	8	4	NaN	NaN	NaN	0.024359	1	12812	12812		66.481	31.185	1	53864			19016	1045	10867	11211	15128	15128					0.0429311064342528
NYISALNTLW	10	Unmodified	_NYISALNTLW_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8113133093501	2	597.811313	1193.60807	0.75207	0.00044959	-8.2133	-0.00491	-7.4613	-0.0044604	598.3063763419057	33.261	0.072411	33.259	33.21	33.283	-0.0024757	1188	52	0.90571284	0.031242788	0.9041934	366.9611	0	12.658386						72	4	2	NaN	NaN	NaN	0.72369	1	15635	15635		6.4299	0.73577	1	5718.6			19017	7916	10868	11212	15129	15129					0.0190139716048634
NYISGCVM	8	Unmodified	_NYISGCVM_					0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.69350635955004	2	443.693506	885.37246	1.0913	0.00048419	5.2289	0.00232	6.3201	0.0028042	443.69625117650287	14.501	0.047949	14.501	14.501	14.549	0	1515	31	0.7042165	0.018595338	0.7042165	286.45444	0	7.564026						38	3	2	NaN	NaN	NaN	0.80692	1	5871	5871		8.2903	2.8244	1	2821			19018	7864	10869	11213	15130	15130					-0.07481154560139203
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.77165683260006	2	504.771657	1007.52876	1.912	0.00096512	-1.3882	-0.00070073	0.52379	0.0002644	504.7707199177785	25.298	0.12062	25.298	25.274	25.395	0	1299	61	0.8375814	0.036905527	0.8375814	340.072	0	14.984253						196	6	3	NaN	NaN	NaN	0.026295	1	8887	8887		63.958	16.477	1	41783			19019	5582	10870	11214	15131	15131					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5360371986002	1	1008.53604	1007.52876	2.3968	0.0024173	0.30722	0.00030984	2.704	0.0027271	1008.5365476915542	25.298	0.41015	25.298	25.25	25.66	0	183	178	1.510409	0.10476804	1.510409	306.6297	0	21.269043						923	18	5	NaN	NaN	NaN	4.1981E-26	1	8888	8888		174.68	61.919	1	487440			19020	5582	10870	11214	15132	15132					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.77165683260006	2	504.771657	1007.52876	1.6086	0.00081197	-0.25786	-0.00013016	1.3507	0.00068181	504.7716574259722	25.298	0.16883	25.286	25.238	25.407	-0.012011	1299	64	0.8375814	0.038757086	0.83606195	340.072	0	15.736023						203	8	3	NaN	NaN	NaN	0.048656	1	8718	8718		47.482	15.92	1	48839			19021	5582	10870	11214	15133	15133					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5360371986002	1	1008.53604	1007.52876	2.5365	0.0025582	-0.28235	-0.00028476	2.2542	0.0022734	1008.5360475045436	25.298	0.31361	25.286	25.238	25.551	-0.012011	180	196	1.5121819	0.1154592	1.5106624	306.98962	0	23.439484						914	14	5	NaN	NaN	NaN	3.3846E-18	1	8719	8719		162.07	68.143	1	470920			19022	5582	10870	11214	15134	15134					0.025297502063381216
NYITAALKL	9	Unmodified	_NYITAALKL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.8002173068	2	503.800217	1005.58588	2.0252	0.0010203	-4.3262	-0.0021796	-2.301	-0.0011592	503.7993491278574	26.288	0.12069	26.288	26.239	26.36	0	1287	40	0.8449601	0.023976922	0.8449601	343.0768	0	9.73526						105	6	3	NaN	NaN	NaN	0.27608	1	8822	8822		20.449	5.2733	1	15627			19023	3171	10871	11215	15135	15135					0.08331217482702868
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.29074504275	2	592.290745	1182.56694	1.4469	0.00085698	-2.5027	-0.0014823	-1.0558	-0.00062534	592.2894940333277	20.333	0.16825	20.333	20.285	20.453	0	1188	73	0.90571284	0.044119358	0.90571284	367.0002	0	17.877441						313	8	3	NaN	NaN	NaN	0.25505	1	15920	15920		43.776	17.661	1	83170			19024	2437	10872	11216	15136	15136					-0.017043638790028126
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.30058144755	2	605.300581	1208.58661	1.4856	0.00089922	-0.78593	-0.00047573	0.69964	0.00042349	605.3000662369159	19.492	0.19196	19.492	19.444	19.636	0	1107	76	0.9552588	0.04583633	0.9552588	386.9804	0	18.568542						316	9	3	NaN	NaN	NaN	0.052553	1	16692	16692		45.827	24.055	1	35661			19025	1139	10873	11217	15137	15137					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.30058144755	2	605.300581	1208.58661	1.0564	0.00063944	0.085232	5.1591E-05	1.1416	0.00069103	605.3010641253051	19.683	0.16846	19.669	19.597	19.765	-0.014141	1107	73	0.9552588	0.044005275	0.9537394	386.9804	0	17.826752						319	8	3	NaN	NaN	NaN	0.013959	1	16021	16021		80.901	59.05	1	34111			19026	1139	10873	11217	15138	15138					-0.00933987868256736
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.81131330935	2	633.811313	1265.60807	2.6217	0.0016617	-1.8255	-0.001157	0.79626	0.00050468	633.8099388738353	18.676	0.26389	18.676	18.628	18.892	0	1104	109	0.9570911	0.06598657	0.9570911	387.5254	0	26.717926						757	12	5	NaN	NaN	NaN	1.7723E-07	1	18121	18121		134.97	68.492	1	295390			19027	909	10874	11218	15139	15139					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.8766343617666	3	422.876634	1265.60807	1.4977	0.00063334	-1.3595	-0.0005749	0.13818	5.8434E-05	422.87610229682105	18.866	0.31221	18.852	18.756	19.068	-0.014059	1458	49	0.7395112	0.029694438	0.73799175	449.13736	0	18.034729						449	14	4	NaN	NaN	NaN	0.47587	1	17320	17320		9.6116	3.9144	1	102530			19028	909	10874	11218	15140	15140					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.81131330935	2	633.811313	1265.60807	2.1834	0.0013839	-1.5468	-0.00098038	0.63663	0.0004035	633.8102155046782	18.866	0.33629	18.852	18.756	19.092	-0.014059	1104	106	0.9570911	0.06415707	0.95557165	387.5254	0	25.977142						884	15	5	NaN	NaN	NaN	0.013959	1	17321	17321		80.901	32.899	1	309460			19029	909	10874	11218	15141	15141					-0.014106028395417525
NYKLTSITF	9	Unmodified	_NYKLTSITF_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289	2	543.795132	1085.57571	1.3419	0.0007297	-2.0074	-0.0010916	-0.66558	-0.00036194	543.7948486804615	24.405	0.072384	24.393	24.368	24.441	-0.012747	1236	55	0.876284	0.033143222	0.8747646	355.44107	0	13.443665						131	4	3	NaN	NaN	NaN	0.13602	1	11895	11895		30.61	14.193	1	16489			19030	2875	10875	11219	15142	15142					0.036346097574551095
NYKRYFPVI	9	Unmodified	_NYKRYFPVI_					0	0	0		ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000267978|ENST00000595065|MAGEA9B;chrX:149583633-149587362|137|14.5|0.03|8.86|-|ENST00000593349|MAGEA9B,MAGEA9B	ENSG00000123584|ENST00000243314|MAGEA9	ENSG00000123584|ENST00000243314|MAGEA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3322159269501	2	600.332216	1198.64988	1.3719	0.00082361	-3.3999	-0.0020411	-2.028	-0.0012175	600.3300555265455	21.681	0.14454	21.681	21.633	21.778	0	1146	55	0.93142134	0.03303951	0.93142134	377.35904	0	13.385742						141	7	3	NaN	NaN	NaN	0.14301	1	16428	16428		29.598	11.629	1	14716			19031	2383	10876	11220	15143	15143					0.05849997639666071
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3014471148001	2	570.301447	1138.58834	1.2784	0.00072908	-5.5646	-0.0031735	-4.2862	-0.0024444	570.7977026299831	12.988	0.12014	12.988	12.892	13.012	0	1197	34	0.9001988	0.02022028	0.9001988	364.9283	0	8.1970215						75	6	2	NaN	NaN	NaN	0.034172	1	14401	14401		53.652	31.817	1	6602.3			19032	1128	10877	11221	15144	15144					0.024590659403884274
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3014471148001	2	570.301447	1138.58834	1.4607	0.00083301	1.1658	0.00066484	2.6264	0.0014979	570.3018291600524	13.036	0.072065	13.036	13.036	13.108	0	1194	31	0.902037	0.018383086	0.902037	365.67346	0	7.45224						63	4	2	NaN	NaN	NaN	0.061945	1	14404	14404		41.839	16.878	1	5172.5			19033	1128	10877	11221	15145	15145					0.024590659403884274
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2927564154501	2	556.292756	1110.57096	1.5346	0.00085366	2.8947	0.0016103	4.4293	0.002464	556.2945516717356	26.481	0.12066	26.481	26.432	26.553	0	1218	94	0.8873258	0.056984484	0.8873258	359.8183	0	23.107697						165	6	3	NaN	NaN	NaN	0.31471	1	13310	13310		17.97	0.18937	1	21031			19034	2490;7895	10878	11222	15146	15146					0.02009725614720992
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.K377*|1|0.38|ENSG00000126012|chrX:53211900-53211901|-/A|frameshift_variant;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-2|KDM5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2927564154501	2	556.292756	1110.57096	1.2878	0.00071639	0.96674	0.00053779	2.2545	0.0012542	556.2931307716715	26.48	0.19303	26.47	26.446	26.639	-0.010645	1212	82	0.8910048	0.04969603	0.88948536	361.31018	0	20.152191						215	9	3	NaN	NaN	NaN	0.31471	1	12932	12932		17.97	0.18937	1	22795			19035	2490;7895	10878	11222	15147	15147					0.02009725614720992
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8060309662002	2	570.806031	1139.59751	1.1189	0.0006387	-3.7943	-0.0021658	-2.6753	-0.0015271	570.8037489707373	31.091	0.28961	31.091	30.97	31.259	0	1194	64	0.902037	0.038610697	0.902037	365.66962	0	15.6521						250	13	2	NaN	NaN	NaN	0.071077	1	14436	14436		40.006	14.205	1	77647			19036	82	10879	11223	15148	15148					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8060309662002	2	570.806031	1139.59751	2.3921	0.0013654	-1.3461	-0.00076834	1.0461	0.00059711	570.8050821649318	30.294	0.33784	30.294	30.222	30.56	0	1194	124	0.902037	0.07533407	0.902037	365.66962	0	30.539062						1247	15	6	NaN	NaN	NaN	0.0068607	1	14440	14440		98.792	40.592	1	1278800			19037	82	10879	11223	15149	15149					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662002	2	570.806031	1139.59751	0.56474	0.00032236	-1.1834	-0.00067551	-0.61869	-0.00035315	570.8056655420545	31.427	0.28961	31.423	31.375	31.664	-0.0044155	1194	67	0.902037	0.040455878	0.9005176	365.66962	0	16.400085						290	13	2	NaN	NaN	NaN	0.31471	1	13969	13969		17.97	1.3855	1	58591			19038	82	10879	11223	15150	15150					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662002	2	570.806031	1139.59751	1.6879	0.00096345	-1.5822	-0.00090312	0.10568	6.0324E-05	570.8051357629173	30.317	0.48259	30.311	30.19	30.673	-0.0064087	1191	106	0.90387505	0.06429565	0.9023556	366.4147	0	26.0643						1428	21	7	NaN	NaN	NaN	0.0056438	1	13971	13971		101.27	34.793	1	1316900			19039	82	10879	11223	15151	15151					0.03329414506060857
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662002	2	570.806031	1139.59751	1.1701	0.00066791	0.77119	0.0004402	1.9413	0.0011081	570.8049604361715	30.92	0.07242	30.915	30.867	30.94	-0.0050716	1194	31	0.902037	0.018379092	0.9005176	365.66962	0	7.4505615						60	4	2	NaN	NaN	NaN	0.54912	1	13973	13973		7.5876	0.047225	1	6493.9			19040	82	10879	11223	15152	15152					0.03329414506060857
NYLDVATFL	9	Unmodified	_NYLDVATFL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5407882255	1	1055.54079	1054.53351	1.484	0.0015664	-0.12577	-0.00013276	1.3582	0.0014336	1055.5402133581197	33.842	0.21717	33.842	33.793	34.01	0	93	127	1.5635144	0.074276686	1.5635144	317.21964	0	15.069916						334	10	2	NaN	NaN	NaN	0.024221	1	10841	10841		66.656	19.521	1	97461			19041	1863	10880	11224	15153	15153					0.008426343491009902
NYLEATVWI	9	Unmodified	_NYLEATVWI_					0	0	0		nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	nc|ENSG00000083520|Q9Y2L1-2|DIS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.567337327	1	1108.56734	1107.56006	0.76318	0.00084604	-0.99081	-0.0010984	-0.22762	-0.00025234	1108.5662387716764	32.489	0.096535	32.486	32.462	32.558	-0.0031013	60	79	1.582944	0.04591751	1.5814246	320.96307	0	9.310394						166	5	2	NaN	NaN	NaN	0.084037	1	12806	12806		38.131	1.896	1	19369			19042	947	10881	11225	15154	15154					0.010583232404314913
NYLGSSHQIW	10	Unmodified	_NYLGSSHQIW_					0	0	0		ENST00000342820.10_1_4:79841695-79843397:-|nuORF;ENST00000512760.5_1_4:79841695-79860421:-|nuORF;ENSG00000163291|ENST00000512733|PAQR3	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7909122182501	2	602.790912	1203.56727	0.85052	0.00051269	5.9504	0.0035868	6.8009	0.0040995	603.2965443981036	31.959	0.1207	31.959	31.911	32.032	0	1185	61	0.90755045	0.036746264	0.90755045	367.67078	0	14.88681						167	6	3	NaN	NaN	NaN	0.60686	1	16575	16575		14.425	0.38343	1	18512			19043	4217	10882	11226	15155	15155					-0.0263694415914415
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.78001318095	2	599.780013	1197.54547	2.1775	0.001306	0.39853	0.00023903	2.576	0.0015451	599.7802751011744	25.998	0.31373	25.998	25.926	26.239	0	1173	106	0.91489893	0.06427485	0.91489893	370.66898	0	26.040771						773	14	5	NaN	NaN	NaN	0.0073225	1	16383	16383		97.85	57.696	1	309840			19044	4933	10883	11227	15156	15156					-0.04539748907723151
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.78001318095	2	599.780013	1197.54547	2.164	0.0012979	0.37643	0.00022578	2.5404	0.0015237	599.7801662384971	25.998	0.24133	25.987	25.89	26.131	-0.011137	1173	97	0.91489893	0.05879408	0.9133795	370.66898	0	23.820282						681	11	4	NaN	NaN	NaN	0.0084155	1	15737	15737		95.62	67.831	1	293200			19045	4933	10883	11227	15157	15157					-0.04539748907723151
NYLHNFWFE	9	Unmodified	_NYLHNFWFE_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.28800538855	2	635.288005	1268.56146	2.0601	0.0013088	0.83697	0.00053171	2.8971	0.0018405	635.7874509425571	23.296	0.12061	23.283	23.258	23.379	-0.013294	1146	46	0.93142134	0.027528465	0.9299019	377.12225	0	11.145996						60	6	2	NaN	NaN	NaN	0.61413	1	17387	17387		4.9097	0.18066	1	8804.9	+		19046	11199	10884	11228	15158	15158					-0.06208042670823488
NYLIDFKHHF	10	Unmodified	_NYLIDFKHHF_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.22777854643334	3	445.227779	1332.66151	0.98886	0.00044027	-0.98968	-0.00044063	-0.00081741	-3.6393E-07	445.2272293702598	21.392	0.072168	21.392	21.368	21.44	0	1440	40	0.7506418	0.024107158	0.7506418	455.65015	0	14.633362						99	4	3	NaN	NaN	NaN	0.47445	1	19300	19300		16.659	10.518	1	10338			19047	3054	10885	11229	15159	15159					0.00848194662989954
NYLIDFKHHF	10	Unmodified						0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	445.227779	1332.66151	1.4833	0.00066041	-1.5071	-0.00067098	-0.023744	-1.0571E-05	445.5604188227663	21.705	0.072237	21.691	21.643	21.715	-0.013897	1440	34	0.7506418	0.020398319	0.7491224	455.65018		12.38208	0.14964	-0.00052761	-0.00075972	NaN	16.659	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5800.3			19048	3054	10885	11229							0.00848194662989954
NYLIRKFM	8	Unmodified	_NYLIRKFM_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.8022370670001	2	542.802237	1083.58992	1.8821	0.0010216	5.757	0.0031249	7.6391	0.0041465	542.8052399973126	25.37	0.12064	25.358	25.334	25.455	-0.012011	1200	43	0.89836043	0.025739074	0.896841	364.40408	0	10.440613						109	6	2	NaN	NaN	NaN	0.80692	1	11826	11826		8.2903	3.1014	1	12396			19049	2607	10886	11230	15160	15160					0.05146983704776176
NYLLESPHRF	10	Unmodified	_NYLLESPHRF_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3276618653	2	638.327662	1274.64077	1.9367	0.0012363	-7.0114	-0.0044756	-5.0747	-0.0032393	638.323456137774	19.372	0.047951	19.372	19.324	19.372	0	1119	31	0.9479278	0.018333495	0.9479278	383.78583	0	7.4226685						60	3	3	NaN	NaN	NaN	0.10101	1	18312	18312		45.827	27.593	1	3445.8			19050	6023	10887	11231	15161	15161					0.01443604283304012
NYLLESPHRF	10	Unmodified	_NYLLESPHRF_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.8875333990666	3	425.887533	1274.64077	1.6206	0.00069019	-0.40229	-0.00017133	1.2183	0.00051886	426.22148214242424	19.348	0.047962	19.348	19.348	19.396	0	1416	28	0.76547134	0.016676903	0.76547134	464.86856	0	10.127808						38	3	2	NaN	NaN	NaN	0.5358	1	18313	18313		10.861	5.1642	1	3144.2			19051	6023	10887	11231	15162	15162					0.01443604283304012
NYLLYVSNF	9	Unmodified	_NYLLYVSNF_					0	0	0		nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.567337327	1	1132.56734	1131.56006	1.3517	0.0015309	-0.8324	-0.00094274	0.51929	0.00058813	1132.5670897185205	31.259	0.19305	31.259	31.235	31.428	0	60	58	1.582944	0.033549786	1.582944	320.87924	0	6.8009033						105	9	2	NaN	NaN	NaN	0.29341	1	14146	14146		19.336	4.161	1	8584.7			19052	4291	10888	11232	15163	15163					-0.0004567675957787287
NYLLYVSNF	9	Unmodified						0	0	0		nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	nc|ENSG00000164078|Q04912-6|MST1R	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1132.56734	1131.56006	1.5057	0.0017053	-0.68429	-0.000775	0.82137	0.00093026	1132.5666589036903	31.258	0.048271	31.253	31.229	31.277	-0.0050716	66	52	1.579413	0.030014992	1.5778936	320.16345		6.084381	-0.0030465	9.777E-05	-0.0025252	NaN	19.336	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2978			19053	4291	10888	11232							-0.0004567675957787287
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.5247065136333	3	415.524707	1243.55229	1.7479	0.00072628	-2.7431	-0.0011398	-0.99527	-0.00041356	415.52334879543264	19.948	0.24043	19.948	19.876	20.117	0	1449	49	0.74507743	0.029684842	0.74507743	452.60446	0	18.032318						250	11	4	NaN	NaN	NaN	0.20577	1	17611	17611		27.296	18.355	1	35829			19054	4543	10889	11233	15164	15164					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.78342153715	2	622.783422	1243.55229	0.99446	0.00061933	-1.3598	-0.00084686	-0.36534	-0.00022753	622.7822788987934	20.068	0.19262	20.054	20.006	20.198	-0.014141	1170	61	0.91673553	0.036734402	0.9152161	371.2565	0	14.876556						208	9	2	NaN	NaN	NaN	0.026295	1	16869	16869		63.958	44.84	1	30510			19055	4543	10889	11233	15165	15165					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.5247065136333	3	415.524707	1243.55229	1.236	0.00051361	-0.78813	-0.00032749	0.44792	0.00018612	415.5245232979356	20.092	0.21668	20.078	20.006	20.222	-0.014141	1449	52	0.74507743	0.031541824	0.743558	452.60443	0	19.16037						246	10	3	NaN	NaN	NaN	0.078597	1	16870	16870		33.425	26.295	1	33447			19056	4543	10889	11233	15166	15166					-0.05974391236486554
NYLPAINGIVF	11	Unmodified	_NYLPAINGIVF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8373310946	2	610.837331	1219.66011	0.84162	0.00051409	-3.3304	-0.0020343	-2.4888	-0.0015202	610.8352322509096	34.252	0.14474	34.252	34.203	34.348	0	1143	55	0.9332562	0.03302884	0.9332562	378.0283	0	13.378815						202	7	3	NaN	NaN	NaN	0.073935	1	16977	16977		50.315	35.461	1	32052			19057	893	10890	11234	15167	15167					0.05906560574226205
NYLPAINGIVF	11	Unmodified	_NYLPAINGIVF_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000152700|ENST00000402673|SAR1B	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8373310946	2	610.837331	1219.66011	0.62681	0.00038288	-1.8476	-0.0011286	-1.2208	-0.00074569	610.8362367586222	34.251	0.14463	34.249	34.201	34.346	-0.0012474	1140	55	0.93509084	0.033025324	0.9335714	378.77142	0	13.37735						189	7	4	NaN	NaN	NaN	0.12028	1	16295	16295		58.2	32.085	1	30655			19058	893	10890	11234	15168	15168					0.05906560574226205
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(92)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1155.5754591723	1	1155.57546	1154.56818	1.9561	0.0022605	-0.85199	-0.00098453	1.1042	0.0012759	1155.5749698180118	33.962	0.048275	33.962	33.914	33.962	0	54	70	1.5864743	0.040608644	1.5864743	321.51758	0	8.229797						163	3	4	NaN	NaN	NaN	0.010404	1	14964	14964		91.563	60.002	1	18570			19059	2107	10891	11235	15169	15169		242			-0.0029186583444698044
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(100)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1155.5754591723	1	1155.57546	1154.56818	1.6663	0.0019255	0.61601	0.00071185	2.2823	0.0026374	1155.5759843088313	33.985	0.16898	33.984	33.911	34.08	-0.0012474	57	64	1.5847093	0.037073493	1.5831898	321.15985	0	7.513397						211	8	2	NaN	NaN	NaN	0.0052656	1	14472	14472		102.05	61.089	1	23681			19060	2107	10891	11235	15170	15170		242			-0.0029186583444698044
NYLPFIMEL	9	Unmodified	_NYLPFIMEL_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1139.5805445502	1	1139.58054	1138.57327	1.4772	0.0016834	-0.29634	-0.00033771	1.1809	0.0013457	1139.5809615512196	37.648	0.16833	37.651	37.603	37.771	0.0028229	54	82	1.5864743	0.047675967	1.5849549	321.57095	0	9.663696						311	8	4	NaN	NaN	NaN	8.7755E-05	1	13931	13931		123.66	70.878	1	31333			19061	2107	10891	11236	15171	15171					0.009524380281618505
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.5294575405333	3	366.529458	1096.56654	2.2709	0.00083235	-2.9365	-0.0010763	-0.6656	-0.00024396	366.52814170701544	18.676	0.19198	18.676	18.652	18.844	0	1542	52	0.6874725	0.031641304	0.6874725	418.2248	0	19.249023						271	9	4	NaN	NaN	NaN	0.062072	1	12701	12701		30.035	11.477	1	57812			19062	4830	10892	11237	15172	15172					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2905480775	2	549.290548	1096.56654	2.2578	0.0012402	-1.4356	-0.00078855	0.82225	0.00045166	549.2897379259039	18.676	0.21592	18.676	18.628	18.844	0	1200	79	0.89836043	0.047827005	0.89836043	364.34998	0	19.397278						481	10	4	NaN	NaN	NaN	0.012861	1	12703	12703		84.233	52.557	1	203150			19063	4830	10892	11237	15173	15173					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.5294575405333	3	366.529458	1096.56654	1.887	0.00069164	-1.0592	-0.00038823	0.82778	0.00030341	366.52912319430277	18.914	0.26422	18.9	18.804	19.068	-0.014059	1539	49	0.68933374	0.02977842	0.6878143	419.3571	0	18.115723						361	12	4	NaN	NaN	NaN	0.29681	1	12370	12370		16.858	7.2467	1	55582			19064	4830	10892	11237	15174	15174					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant;nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2905480775	2	549.290548	1096.56654	1.9139	0.0010513	-0.82982	-0.00045581	1.084	0.00059546	549.2901915950921	18.914	0.36039	18.9	18.78	19.14	-0.014059	1203	70	0.8965218	0.042306185	0.89500237	363.60428	0	17.158203						531	16	4	NaN	NaN	NaN	0.0080618	1	12371	12371		96.341	59.755	1	194960			19065	4830	10892	11237	15175	15175					0.022122611917893664
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.5572361068333	3	396.557236	1186.64988	1.256	0.00049808	-2.1076	-0.0008358	-0.85164	-0.00033773	396.55638789704386	24.816	0.14479	24.816	24.791	24.936	0	1455	40	0.7413668	0.024120152	0.7413668	450.58707	0	14.6597595						211	7	4	NaN	NaN	NaN	0.18779	1	16066	16066		23.086	4.8523	1	46787			19066	436	10893	11238	15176	15176					0.06401997639636647
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.33221592695	2	594.332216	1186.64988	1.5071	0.00089573	-2.2333	-0.0013273	-0.72621	-0.00043161	594.3310957521445	24.816	0.19307	24.816	24.767	24.96	0	1140	70	0.93509084	0.0422104	0.93509084	378.8893	0	17.10321						414	9	5	NaN	NaN	NaN	2.212E-07	1	16067	16067		133.34	69.385	1	187000			19067	436	10893	11238	15177	15177					0.06401997639636647
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.33221592695	2	594.332216	1186.64988	1.3664	0.00081208	-1.9847	-0.0011796	-0.61834	-0.0003675	594.8321044310295	25.057	0.38603	25.045	24.876	25.262	-0.012011	1140	79	0.93509084	0.04772383	0.9335714	378.8893	0	19.337189						488	17	4	NaN	NaN	NaN	0.13999	1	15453	15453		30.035	8.2004	1	139860			19068	436	10893	11238	15178	15178					0.06401997639636647
NYLSIYNTFL	10	Unmodified	_NYLSIYNTFL_					0	0	0			REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.31897116595	2	624.318971	1246.62339	1.6736	0.0010449	-8.4772	-0.0052925	-6.8036	-0.0042476	624.3134781352612	29.329	0.28959	29.329	29.256	29.546	0	1152	100	0.92775106	0.060530066	0.92775106	375.70743	0	24.512604						682	13	5	NaN	NaN	NaN	0.085203	1	17684	17684		48.002	9.8714	1	252250	+		19069	8959	10894	11239	15179	15179					0.009942639576365764
NYLSIYNTFL	10	Unmodified						0	0	0			REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.318971	1246.62339	1.6736	0.0010449	-8.4772	-0.0052925	-6.8036	-0.0042476	624.3134781352612	29.329	0.28959	29.329	29.256	29.546	0	1152	100	0.92775106	0.060530066	0.92775106	375.70743		24.512604	-0.019867	0.00057985	-0.0001579	NaN	48.002	682	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252250	+		19070	8959	10894	11239							0.009942639576365764
NYLSLAAL	8	Unmodified	_NYLSLAAL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.4825450651	1	864.482545	863.475269	1.4244	0.0012313	1.6792	0.0014516	3.1036	0.002683	864.4835935272769	37.024	0.24096	37.024	36.952	37.193	0	354	61	1.4090419	0.035682797	1.4090419	286.69443	0	7.260315						177	11	2	NaN	NaN	NaN	0.72043	1	5577	5577		17.78	0	1	17560	+		19071	10022	10895	11240	15180	15180					0.03806997494461939
NYLTKIYGL	9	Unmodified	_NYLTKIYGL_					0	0	0		ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN	ENSG00000174348|ENST00000312553|PODN	ENSG00000174348|ENST00000312553|PODN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.8054996499501	2	542.8055	1083.59645	1.7687	0.00096004	-0.34277	-0.00018606	1.4259	0.00077398	542.8052143967392	25.346	0.14477	25.346	25.322	25.467	0	1200	43	0.89836043	0.025739074	0.89836043	364.40408	0	10.440613						153	7	3	NaN	NaN	NaN	0.18779	1	12135	12135		26.115	11.69	1	16973			19072	4940	10896	11241	15181	15181					0.05799200137153093
NYLTRIRI	8	Unmodified	_NYLTRIRI_					0	0	0		ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.81673303825	2	524.816733	1047.61891	1.0314	0.00054127	-9.6819	-0.0050812	-8.6505	-0.0045399	524.8117274229426	26.746	0.14481	26.735	26.711	26.856	-0.010645	1221	103	0.885486	0.062570035	0.88396657	359.33667	0	25.391388						245	7	3	NaN	NaN	NaN	0.3434	1	10334	10334		39.459	0.41965	1	40612			19073	3640	10897	11242	15182	15182					0.09700844325402613
NYLVAVSAIF	10	Unmodified	_NYLVAVSAIF_					0	0	0			REV__EML1|p.V254A|1|0.3|ENSG00000066629|chr14:99897228-99897228|T/C|missense_variant	REV__EML1|p.V254A|1|0.3|ENSG00000066629|chr14:99897228-99897228|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.80549964995	2	548.8055	1095.59645	1.1746	0.00064465	7.9554	0.004366	9.13	0.0050106	548.8099290814145	27.253	0.072376	27.253	27.229	27.302	0	1233	76	0.87812483	0.046044707	0.87812483	356.14685	0	18.674652						140	4	3	NaN	NaN	NaN	0.20271	1	12664	12664		35.296	1.8712	1	32371	+		19074	8343	10898	11243	15183	15183					0.05247200137114305
NYLVAVSAIF	10	Unmodified						0	0	0			REV__EML1|p.V254A|1|0.3|ENSG00000066629|chr14:99897228-99897228|T/C|missense_variant	REV__EML1|p.V254A|1|0.3|ENSG00000066629|chr14:99897228-99897228|T/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.8055	1095.59645	1.1746	0.00064465	7.9554	0.004366	9.13	0.0050106	548.8099290814145	27.253	0.072376	27.253	27.229	27.302	0	1233	76	0.87812483	0.046044707	0.87812483	356.14685		18.674652	-0.018693	0.00036003	0.00075972	NaN	35.296	140	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32371	+		19075	8343	10898	11243							0.05247200137114305
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.3243908948501	2	551.324391	1100.63423	1.2333	0.00067993	-4.1566	-0.0022916	-2.9233	-0.0016117	551.3220799190601	24.598	0.14473	24.598	24.55	24.695	0	1254	94	0.8652351	0.057046056	0.8652351	350.8992	0	23.135223						350	7	4	NaN	NaN	NaN	0.016254	1	12879	12879		76.739	50.624	1	80950			19076	2159	10899	11244	15184	15184					0.08793711122621062
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3243908948501	2	551.324391	1100.63423	1.3352	0.0007361	-4.2232	-0.0023283	-2.888	-0.0015922	551.32245372225	24.598	0.14472	24.586	24.562	24.707	-0.012394	1254	94	0.8652351	0.057052255	0.86371565	350.8992	0	23.137726						350	7	3	NaN	NaN	NaN	0.04947	1	12542	12542		47.136	18.24	1	85453			19077	2159	10899	11244	15185	15185					0.08793711122621062
NYMEVVSLL	9	Unmodified	_NYMEVVSLL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2757177552502	2	534.275718	1066.53688	1.1898	0.00063567	-3.8659	-0.0020655	-2.6761	-0.0014298	534.2737608795865	33.214	0.14479	33.214	33.19	33.335	0	1233	46	0.87812483	0.027614892	0.87812483	356.2674	0	11.203705						162	7	4	NaN	NaN	NaN	0.48181	1	11401	11401		10.36	5.4504	1	19562			19078	1994	10900	11245	15186	15186					0.006275611314777052
NYMEVVSLL	9	Unmodified	_NYMEVVSLL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5441590439002	1	1067.54416	1066.53688	1.2024	0.0012836	0.58796	0.00062768	1.7904	0.0019113	1067.5446003930206	33.214	0.1448	33.214	33.166	33.311	0	81	91	1.5705823	0.05301547	1.5705823	318.60733	0	10.754669						298	7	3	NaN	NaN	NaN	0.030669	1	11404	11404		58.235	18.777	1	40691			19079	1994	10900	11245	15187	15187					0.006275611314777052
NYMEVVSLL	9	Unmodified	_NYMEVVSLL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5441590439002	1	1067.54416	1066.53688	0.64416	0.00068767	0.78981	0.00084316	1.434	0.0015308	1067.5447951534481	33.213	0.19305	33.21	33.138	33.331	-0.0024757	78	85	1.5723488	0.049481153	1.5708294	318.96567	0	10.037689						290	9	3	NaN	NaN	NaN	0.0084155	1	11137	11137		95.62	40.206	1	35489			19080	1994	10900	11245	15188	15188					0.006275611314777052
NYMEVVSLL	9	Unmodified						0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.275718	1066.53688	0.45057	0.00024073	-2.0421	-0.001091	-1.5915	-0.0008503	534.2748354455819	33.213	0.12067	33.21	33.186	33.307	-0.0024757	1233	40	0.87812483	0.023927689	0.8766054	356.2674		9.707794	-0.0019076	0.0013534	-0.00075972	NaN	10.36	146	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17254			19081	1994	10900	11245							0.006275611314777052
NYMEVVSLL	9	Oxidation (M)	_NYM(Oxidation (M))EVVSLL_		NYM(1)EVVSLL		NYM(53)EVVSLL	0	0	1		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5390736660001	1	1083.53907	1082.5318	1.5308	0.0016587	-0.55996	-0.00060673	0.97085	0.001052	1083.5401118106092	29.594	0.21718	29.594	29.522	29.739	0	81	115	1.5705823	0.0671885	1.5705823	318.54718	0	13.627228						397	10	3	NaN	NaN	NaN	0.03618	1	12092	12092		52.78	20.327	1	51542			19082	1994	10900	11246	15189	15189		224			-0.006167427311538631
NYMEVVSLL	9	Oxidation (M)	_NYM(Oxidation (M))EVVSLL_		NYM(1)EVVSLL		NYM(76)EVVSLL	0	0	1		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5390736660001	1	1083.53907	1082.5318	1.2503	0.0013547	0.46892	0.0005081	1.7192	0.0018628	1083.540493079976	29.593	0.16889	29.586	29.538	29.707	-0.0070667	75	100	1.5741152	0.058326244	1.5725957	319.26373	0	11.829803						329	8	3	NaN	NaN	NaN	0.017076	1	11780	11780		75.698	31.06	1	43033			19083	1994	10900	11246	15190	15190		224			-0.006167427311538631
NYMIVYLNGA	10	Unmodified	_NYMIVYLNGA_					0	0	0		ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2	ENSG00000140299|ENST00000607373|BNIP2	ENSG00000140299|ENST00000607373|BNIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2866167925501	2	579.286617	1156.55868	1.3884	0.00080428	7.889	0.00457	9.2774	0.0053743	579.290369970267	24.454	0.14473	24.454	24.357	24.502	0	1221	64	0.885486	0.03861493	0.885486	358.89716	0	15.651062						140	7	2	NaN	NaN	NaN	0.53991	1	15038	15038		17.799	6.2505	1	16630			19084	3261	10901	11247	15191	15191					-0.013336341199646995
NYMKWWRF	8	Unmodified	_NYMKWWRF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.7974860401	2	615.797486	1229.58042	0.5875	0.00036178	2.4918	0.0015344	3.0792	0.0018962	615.7982385084754	27.977	0.048246	27.968	27.919	27.968	-0.0089798	1134	109	0.9387595	0.06607914	0.93724006	380.22314	0	26.763855						101	3	2	NaN	NaN	NaN	0.77489	1	16538	16538		12.588	0.53918	1	35407	+		19085	9741	10902	11248	15192	15192					-0.02518784580774991
NYMKWWRF	8	Unmodified						0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.797486	1229.58042	1.3188	0.00081209	-1.227	-0.00075559	0.091743	5.6495E-05	615.7965604472781	28.291	0.19302	28.291	28.243	28.436	0	1146	91	0.93142134	0.05507189	0.93142134	377.25098		22.305603	0.16172	-0.0009497	-0.0029094	NaN	12.588	321	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73339	+		19086	9741	10902	11248							-0.02518784580774991
NYMKWWRF	8	Unmodified						0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	615.797486	1229.58042	0.5875	0.00036178	2.4918	0.0015344	3.0792	0.0018962	615.7982385084754	27.977	0.048246	27.968	27.919	27.968	-0.0089798	1134	109	0.9387595	0.06607914	0.93724006	380.22314		26.763855	-0.16172	0.0036303	0.0029094	NaN	12.588	101	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35407	+		19087	9741	10902	11248							-0.02518784580774991
NYMRSTFSL	9	Unmodified	_NYMRSTFSL_					0	0	0			REV__ENSG00000120440|ENST00000239587|TTLL2	REV__ENSG00000120440|ENST00000239587|TTLL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.7685912149001	2	559.768591	1117.52263	1.6981	0.00095053	-1.9475	-0.0010901	-0.24938	-0.0001396	559.7679168812899	20.093	0.19218	20.093	20.021	20.213	0	1209	91	0.892844	0.05519098	0.892844	362.02838	0	22.378693						263	9	3	NaN	NaN	NaN	0.49672	1	13573	13573		9.746	0.13435	1	41713	+		19088	9313	10903	11249	15193	15193					-0.031430912968289704
NYMSPFAQF	9	Oxidation (M)	_NYM(Oxidation (M))SPFAQF_		NYM(1)SPFAQF		NYM(41)SPFAQF	0	0	1		ENST00000548721.1_1_12:110974844-110983893:-|nuORF;ENSG00000196850|ENST00000354300|PPTC7	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1120.4768077602	1	1120.47681	1119.46953	1.3052	0.0014624	2.5309	0.0028358	3.8361	0.0042982	1120.4797532776663	27.277	0.16891	27.267	27.194	27.363	-0.010126	87	55	1.5670487	0.03180921	1.5655292	317.69843	0	6.448883						134	8	2	NaN	NaN	NaN	0.064504	1	13233	13233		40.957	30.352	1	12165			19089	5659	10904	11250	15194	15194		577			-0.08542469079498005
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5520216138	1	1067.55202	1066.54475	1.4213	0.0015173	0.015392	1.6431E-05	1.4367	0.0015338	1067.552214827254	32.828	0.14479	32.828	32.78	32.925	0	102	94	1.5582114	0.0548203	1.5582114	316.09775	0	11.120819						215	7	3	NaN	NaN	NaN	0.043119	1	11409	11409		49.833	27.998	1	23544			19090	5479	10905	11251	15195	15195					0.014134564432424668
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2796490402001	2	534.279649	1066.54475	1.4485	0.00077391	1.2702	0.00067866	2.7188	0.0014526	534.2804166724163	32.828	0.12067	32.828	32.804	32.925	0	1248	49	0.8689189	0.029463828	0.8689189	352.53238	0	11.953857						146	6	3	NaN	NaN	NaN	0.25448	1	11411	11411		21.835	2.7167	1	14566			19091	5479	10905	11251	15196	15196					0.014134564432424668
NYNDRYDEI	9	Unmodified	_NYNDRYDEI_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2596418796	2	601.259642	1200.50473	1.562	0.00093918	1.4678	0.00088255	3.0299	0.0018217	601.2594908507461	17.309	0.11981	17.309	17.285	17.405	0	1212	52	0.8910048	0.03126645	0.8910048	360.97818	0	12.667145						128	6	3	NaN	NaN	NaN	0.40649	1	16484	16484		13.463	0.46021	1	16920			19092	3625	10906	11252	15197	15197					-0.08750135017999128
NYNDRYDEI	9	Unmodified	_NYNDRYDEI_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2596418796	2	601.259642	1200.50473	1.3382	0.00080459	0.68456	0.0004116	2.0227	0.0012162	601.259714164109	17.33	0.16802	17.316	17.292	17.46	-0.013567	1215	40	0.8891654	0.023914814	0.88764596	360.23297	0	9.688721						130	8	3	NaN	NaN	NaN	0.3106	1	15834	15834		18.233	1.6493	1	15970			19093	3625	10906	11252	15198	15198					-0.08750135017999128
NYNDVYSAF	9	Unmodified	_NYNDVYSAF_					0	0	0		ENSG00000128045|ENST00000248706|RASL11B	ENSG00000128045|ENST00000248706|RASL11B	ENSG00000128045|ENST00000248706|RASL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.4632661859998	1	1092.46327	1091.45599	2.1981	0.0024013	-0.24093	-0.00026321	1.9571	0.0021381	1092.4633914970318	25.153	0.12062	25.153	25.129	25.25	0	147	46	1.5316714	0.026562572	1.5316714	310.62326	0	5.386902						100	6	2	NaN	NaN	NaN	0.38313	1	12447	12447		14.425	3.8201	1	9958.1			19094	2555	10907	11253	15199	15199					-0.08608003587096391
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2929533807	2	593.292953	1184.57135	1.4351	0.00085143	-1.6479	-0.00097768	-0.21279	-0.00012625	593.2924597260723	20.742	0.28923	20.742	20.646	20.935	0	1197	73	0.9001988	0.04411459	0.9001988	364.75876	0	17.875153						477	13	5	NaN	NaN	NaN	0.00012629	1	15996	15996		121.31	68.169	1	219900			19095	752	10908	11254	15200	15200					-0.013548994561006111
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.2929533807	2	593.292953	1184.57135	1.0143	0.00060177	-1.0401	-0.00061708	-0.025796	-1.5304E-05	593.292503755546	20.766	0.28916	20.752	20.632	20.921	-0.014086	1197	91	0.9001988	0.055179	0.8986794	364.75876	0	22.358429						512	13	5	NaN	NaN	NaN	0.0040343	1	15387	15387		104.89	54.575	1	232070			19096	752	10908	11254	15201	15201					-0.013548994561006111
NYPDEFTKL	9	Unmodified	_NYPDEFTKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1-CCDC47|1|fusion;nc|ENSG00000196712|P21359-4|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7743964868	2	563.774396	1125.53424	1.9499	0.0010993	0.45376	0.00025582	2.4037	0.0013551	563.7738745708995	22.067	0.12067	22.067	22.067	22.187	0	1218	40	0.8873258	0.023914814	0.8873258	359.75967	0	9.696075						103	6	2	NaN	NaN	NaN	0.32672	1	13898	13898		17.198	0.34012	1	21207			19097	5655	10909	11255	15202	15202					-0.02350571001852586
NYPDEFTKL	9	Unmodified	_NYPDEFTKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1-CCDC47|1|fusion;nc|ENSG00000196712|P21359-4|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7743964868	2	563.774396	1125.53424	1.1383	0.00064176	-0.17481	-9.8551E-05	0.96352	0.00054321	563.7728130054737	22.091	0.096399	22.077	22.053	22.149	-0.013731	1224	46	0.883646	0.02759999	0.88212657	358.26773	0	11.190186						123	5	3	NaN	NaN	NaN	0.13999	1	13470	13470		30.035	9.5867	1	20444			19098	5655	10909	11255	15203	15203					-0.02350571001852586
NYPDNVVFKF	10	Unmodified	_NYPDNVVFKF_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.81131330935	2	621.811313	1241.60807	1.4584	0.00090684	0.54657	0.00033986	2.005	0.0012467	621.8122143518243	26.143	0.16893	26.131	26.035	26.204	-0.011137	1149	67	0.92958635	0.04037732	0.9280669	376.46725	0	16.352142						202	8	3	NaN	NaN	NaN	0.14291	1	16823	16823		55.958	37.725	1	39277			19099	4904	10910	11256	15204	15204					-0.003066028395323883
NYPDNVVFKF	10	Unmodified						0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	621.811313	1241.60807	1.8357	0.0011415	2.8286	0.0017589	4.6643	0.0029003	621.8132767788974	25.95	0.096512	25.95	25.926	26.022	0	1149	79	0.92958635	0.047692895	0.92958635	376.46725		19.31485	-0.090862	0.0016037	0.00075972	NaN	55.958	166	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23649			19100	4904	10910	11256							-0.003066028395323883
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.8666198503003	2	644.86662	1287.71869	2.1982	0.0014176	-4.012	-0.0025872	-1.8138	-0.0011697	644.863716129689	28.219	0.24131	28.219	28.146	28.388	0	1101	79	0.95892316	0.04763639	0.95892316	388.19525	0	19.284363						359	11	4	NaN	NaN	NaN	0.095947	1	18566	18566		40.006	23.422	1	64685			19101	2610	10911	11257	15205	15205					0.08633617148734629
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.8666198503003	2	644.86662	1287.71869	1.6536	0.0010663	-3.1088	-0.0020048	-1.4553	-0.00093846	644.8638897180347	28.242	0.2172	28.233	28.161	28.378	-0.0089779	1098	73	0.960755	0.043981552	0.9592356	388.93683	0	17.80478						376	10	4	NaN	NaN	NaN	0.13233	1	17738	17738		36.622	19.763	1	65488			19102	2610	10911	11257	15206	15206					0.08633617148734629
NYPHFFLDF	9	Unmodified	_NYPHFFLDF_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.2796490402001	2	600.279649	1198.54475	0.39186	0.00023523	4.2703	0.0025634	4.6622	0.0027986	600.2814508808633	31.476	0.1931	31.471	31.423	31.616	-0.0044155	1194	97	0.902037	0.05879408	0.9005176	365.45453	0	23.820038						510	9	3	NaN	NaN	NaN	0.31737	1	15771	15771		17.799	2.7861	1	56660			19103	5736	10912	11258	15207	15207					-0.0465854355677493
NYPHFFLDF	9	Unmodified						0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.279649	1198.54475	0.62737	0.0003766	2.855	0.0017138	3.4823	0.0020904	600.2819850054426	31.477	0.21723	31.477	31.404	31.621	0	1188	103	0.90571284	0.062495768	0.90571284	366.94376		25.319763	0.002738	-0.00084277	0.0025976	NaN	17.799	440	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47700			19104	5736	10912	11258							-0.0465854355677493
NYPKEGSHLKC	11	Unmodified	_NYPKEGSHLKC_					0	0	0			REV__ENSG00000263002|ENST00000426739|ZNF234	REV__ENSG00000263002|ENST00000426739|ZNF234	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.3111545213501	2	638.311155	1274.60776	1.9243	0.0012283	-7.9725	-0.0050889	-6.0481	-0.0038606	638.8074245546561	26.456	0.28956	26.445	26.373	26.662	-0.011137	1128	82	0.9424274	0.04951924	0.94090796	381.55902	0	20.048798						603	13	5	NaN	NaN	NaN	0.21983	1	17498	17498		28.495	1.1991	1	112080	+		19105	11403	10913	11259	15208	15208					-0.0185634583101546
NYPLLLLTL	9	Unmodified	_NYPLLLLTL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.6448593665	1	1059.64486	1058.63758	1.0045	0.0010644	-0.37827	-0.00040083	0.62619	0.00066354	1059.6452031173208	38.924	0.1922	38.924	38.828	39.02	0	57	52	1.5847093	0.030014992	1.5847093	321.50375	0	6.0894165						206	9	3	NaN	NaN	NaN	0.0034808	1	11045	11045		106.56	53.934	1	16932			19106	2404	10914	11260	15209	15209					0.11060961176622186
NYPLLLLTL	9	Unmodified	_NYPLLLLTL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.6448593665	1	1059.64486	1058.63758	1.5515	0.001644	-0.04287	-4.5427E-05	1.5086	0.0015986	1059.6451419785806	38.898	0.19218	38.903	38.831	39.023	0.0046806	57	52	1.5847093	0.030011892	1.5831898	321.50375	0	6.088745						209	9	3	NaN	NaN	NaN	0.0040938	1	10810	10810		104.71	40.753	1	15712			19107	2404	10914	11260	15210	15210					0.11060961176622186
NYPPQYLILKL	11	Unmodified	_NYPPQYLILKL_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.3950131490001	2	681.395013	1360.77547	1.5277	0.001041	-2.9206	-0.0019901	-1.3929	-0.00094915	681.393179925819	29.329	0.16889	29.329	29.256	29.425	0	1065	70	0.9808926	0.042087674	0.9808926	396.86267	0	17.028381						380	8	4	NaN	NaN	NaN	0.21983	1	19695	19695		28.495	20.908	1	65424			19108	2574	10915	11261	15211	15211					0.10951664705225994
NYPPQYLILKL	11	Unmodified	_NYPPQYLILKL_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.3950131490001	2	681.395013	1360.77547	1.1922	0.00081234	-2.2632	-0.0015421	-1.071	-0.00072978	681.3932555529072	29.352	0.19305	29.344	29.272	29.465	-0.0077209	1065	67	0.9808926	0.040259898	0.97937316	396.86267	0	16.28891						336	9	3	NaN	NaN	NaN	0.20314	1	18790	18790		30.035	13.451	1	60949			19109	2574	10915	11261	15212	15212					0.10951664705225994
NYPQHRQEP	9	Unmodified	_NYPQHRQEP_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7783361592501	2	584.778336	1167.54212	1.4626	0.0008553	2.0969	0.0012262	3.5595	0.0020815	584.7794328457348	21.729	0.21663	21.715	21.667	21.884	-0.013897	1221	76	0.885486	0.045980036	0.88396657	358.8574	0	18.634125						335	10	3	NaN	NaN	NaN	0.14787	1	14859	14859		28.896	10.926	1	44244			19110	4683	10916	11262	15213	15213					-0.0349499896171892
NYPQSVPRL	9	Unmodified	_NYPQSVPRL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2905480775001	2	537.290548	1072.56654	1.9663	0.0010565	-2.6863	-0.0014433	-0.72001	-0.00038686	537.2889822755927	19.444	0.21596	19.444	19.348	19.564	0	1290	139	0.84311575	0.08476353	0.84311575	342.0392	0	34.387268						413	10	3	NaN	NaN	NaN	0.11656	1	11676	11676		33.425	11.299	1	48285			19111	5737	10917	11263	15214	15214					0.03316261191821468
NYPTKGNHRVE	11	Unmodified	_NYPTKGNHRVE_					0	0	0		NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.83110001125	2	657.8311	1313.64765	1.7825	0.0011726	-4.4261	-0.0029116	-2.6436	-0.001739	657.8274883429201	25.95	0.14477	25.95	25.877	26.022	0	1098	46	0.960755	0.027472138	0.960755	388.85535	0	11.119049						144	7	3	NaN	NaN	NaN	0.62211	1	19013	19013		12.57	2.9581	1	15614			19112	8075	10918	11264	15215	15215					0.0033691716387238557
NYPTKGNHRVE	11	Unmodified						0	0	0		NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	NIF3L1|p.E164K|1|0.32|ENSG00000196290|chr2:200893299-200893299|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	657.8311	1313.64765	2.0277	0.0013339	-6.0567	-0.0039843	-4.029	-0.0026504	658.3277834312701	25.974	0.12068	25.962	25.938	26.059	-0.0116	1098	82	0.960755	0.049492598	0.9592356	388.85535		20.031586	0.0061534	-0.0011777	-0.00075972	NaN	12.57	203	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19025			19113	8075	10918	11264							0.0033691716387238557
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2667386302	2	585.266739	1168.51892	2.0951	0.0012262	-0.62552	-0.0003661	1.4696	0.00086012	585.266331831656	28.605	0.24135	28.605	28.508	28.75	0	1206	91	0.894683	0.05519694	0.894683	362.5811	0	22.369232						582	11	4	NaN	NaN	NaN	0.059222	1	15426	15426		42.995	16.88	1	131770			19114	3651	10919	11265	15216	15216					-0.05859437799040279
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1169.5262007938	1	1169.5262	1168.51892	2.803	0.0032782	-0.83443	-0.00097589	1.9686	0.0023023	1169.5250946289623	28.629	0.33787	28.629	28.532	28.87	0	75	73	1.5741152	0.0423944	1.5741152	318.9678	0	8.590485						526	15	4	NaN	NaN	NaN	2.4842E-13	1	15427	15427		153.86	113.71	1	75849			19115	3651	10919	11265	15217	15217					-0.05859437799040279
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1169.5262007938	1	1169.5262	1168.51892	1.8861	0.0022058	-0.86067	-0.0010066	1.0254	0.0011993	1169.524743393846	28.628	0.24129	28.62	28.547	28.789	-0.0083504	75	70	1.5741152	0.04062581	1.5725957	318.9678	0	8.232117						431	11	3	NaN	NaN	NaN	0.00016172	1	14889	14889		119.15	76.833	1	65509			19116	3651	10919	11265	15218	15218					-0.05859437799040279
NYPVWDTQF	9	Unmodified	_NYPVWDTQF_					0	0	0		ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	ENSG00000148835|ENST00000369839|TAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2667386302	2	585.266739	1168.51892	1.3932	0.00081541	-0.28662	-0.00016775	1.1066	0.00064766	585.2664933263109	28.604	0.21714	28.596	28.475	28.692	-0.0083504	1203	94	0.8965218	0.05702758	0.89500237	363.3263	0	23.111115						557	10	4	NaN	NaN	NaN	0.034172	1	14890	14890		53.652	29.09	1	144210			19117	3651	10919	11265	15219	15219					-0.05859437799040279
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7750651888	2	581.775065	1161.53558	1.9963	0.0011614	-1.6615	-0.0009666	0.33487	0.00019482	581.7743023390261	21.2	0.28898	21.2	21.079	21.368	0	1221	70	0.885486	0.042306185	0.885486	358.87906	0	17.146301						631	13	5	NaN	NaN	NaN	0.018156	1	15196	15196		74.332	49.77	1	220460			19118	6369	10920	11266	15220	15220					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7750651888	2	581.775065	1161.53558	1.8922	0.0011009	-2.0705	-0.0012046	-0.17825	-0.0001037	581.7739133633248	21.392	0.36119	21.378	21.234	21.595	-0.014006	1212	76	0.8910048	0.045980036	0.88948536	361.11578	0	18.635254						696	16	4	NaN	NaN	NaN	0.11467	1	14680	14680		33.698	15.664	1	201760			19119	6369	10920	11266	15221	15221					-0.03872892122444682
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.8200040087002	2	605.820004	1209.62546	1.218	0.00073792	-1.3504	-0.00081809	-0.13234	-8.0174E-05	605.8189295772742	14.477	0.33589	14.477	14.429	14.765	0	1188	43	0.90571284	0.025727928	0.90571284	366.90552	0	10.422455						405	15	4	NaN	NaN	NaN	0.023828	1	16723	16723		67.154	31.858	1	70191			19120	637	10921	11267	15222	15222					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.8200040087002	2	605.820004	1209.62546	0.80643	0.00048855	-0.88453	-0.00053587	-0.078102	-4.7316E-05	605.8193048291062	14.644	0.21561	14.633	14.537	14.752	-0.011219	1188	43	0.90571284	0.025727928	0.9041934	366.90552	0	10.422424						215	10	2	NaN	NaN	NaN	0.055351	1	16049	16049		44.638	21.521	1	57022			19121	637	10921	11267	15223	15223					0.02902737486147089
NYQLLIAMQF	10	Unmodified	_NYQLLIAMQF_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8233664396001	2	620.823366	1239.63218	1.2604	0.00078246	-4.7159	-0.0029277	-3.4555	-0.0021453	620.8204783328637	34.662	0.19292	34.662	34.589	34.782	0	1167	55	0.91857195	0.03305024	0.91857195	372.01315	0	13.38504						214	9	3	NaN	NaN	NaN	0.56921	1	17516	17516		16.584	1.1215	1	23237	+		19122	8506	10922	11268	15224	15224					0.021949143225128864
NYQLLIAMQF	10	Unmodified						0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.823366	1239.63218	1.2604	0.00078246	-4.7159	-0.0029277	-3.4555	-0.0021453	620.8204783328637	34.662	0.19292	34.662	34.589	34.782	0	1167	55	0.91857195	0.03305024	0.91857195	372.01315		13.38504	-0.047189	0.00074727	-0.00015839	NaN	16.584	214	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23237	+		19123	8506	10922	11268							0.021949143225128864
NYQLLIAMQF	10	Unmodified						0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.823366	1239.63218	0.76407	0.00047435	-7.8448	-0.0048703	-7.0808	-0.0043959	621.3179627139604	34.757	0.21691	34.756	34.587	34.804	-0.0006485	1164	64	0.9204082	0.038552344	0.91888875	372.7568		15.613373	0.047189	-0.0031378	0.00015839	NaN	16.584	233	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35947	+		19124	8506	10922	11268							0.021949143225128864
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.8038226282501	2	557.803823	1113.59309	1.4158	0.00078972	-3.5089	-0.0019573	-2.0931	-0.0011676	557.8021177866968	15.222	0.1922	15.222	15.198	15.39	0	1218	40	0.8873258	0.023917377	0.8873258	359.80637	0	9.698364						172	9	3	NaN	NaN	NaN	0.012495	1	13439	13439		85.344	56.449	1	25106			19125	3567	10923	11269	15225	15225					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.8038226282501	2	557.803823	1113.59309	1.4578	0.00081316	-2.2883	-0.0012764	-0.83049	-0.00046325	557.8025027540417	15.34	0.19189	15.328	15.256	15.448	-0.012202	1218	37	0.8873258	0.022076428	0.8858064	359.80634	0	8.951843						216	9	3	NaN	NaN	NaN	0.042816	1	13055	13055		49.961	36.498	1	26866			19126	3567	10923	11269	15226	15226					0.040839500831452824
NYQRLFDFF	9	Unmodified	_NYQRLFDFF_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;ENST00000560616.5_3_15:91450651-91453805:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.30365545275	2	625.303655	1248.59276	0.91611	0.00057285	-7.6958	-0.0048122	-6.7796	-0.0042393	625.2990910832892	31.066	0.16892	31.066	31.018	31.187	0	1149	55	0.92958635	0.033035994	0.92958635	376.44412	0	13.378204						193	8	2	NaN	NaN	NaN	0.41527	1	17740	17740		19.164	5.122	1	43502			19127	7593;5637	10924	11270	15227	15227					-0.021594696367174038
NYQRLFDFF	9	Unmodified	_NYQRLFDFF_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;ENST00000560616.5_3_15:91450651-91453805:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.30365545275	2	625.303655	1248.59276	0.7536	0.00047123	-6.9324	-0.0043348	-6.1788	-0.0038636	625.2989082973215	31.089	0.21722	31.084	31.036	31.253	-0.0050716	1146	52	0.93142134	0.031192243	0.9299019	377.18723	0	12.631561						194	10	2	NaN	NaN	NaN	0.28943	1	16993	16993		27.296	9.3265	1	39872			19128	7593;5637	10924	11270	15228	15228					-0.021594696367174038
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.5782363643002	1	1111.57824	1110.57096	1.674	0.0018608	-0.13806	-0.00015347	1.5359	0.0017073	1111.5782081993743	29.136	0.096527	29.136	29.087	29.184	0	66	67	1.579413	0.03885734	1.579413	320.23642	0	7.878601						152	5	3	NaN	NaN	NaN	0.024221	1	13308	13308		66.656	32.218	1	13131			19129	2457	10925	11271	15229	15229					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2927564154502	2	556.292756	1110.57096	1.4143	0.00078674	1.4073	0.00078286	2.8215	0.0015696	556.2943279379784	29.136	0.16894	29.136	29.087	29.256	0	1215	88	0.8891654	0.053319573	0.8891654	360.56427	0	21.621552						475	8	4	NaN	NaN	NaN	0.028349	1	13309	13309		61.271	32.376	1	125080			19130	2457	10925	11271	15230	15230					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.5782363643002	1	1111.57824	1110.57096	1.0417	0.0011579	0.57992	0.00064463	1.6216	0.0018025	1111.5794971693817	29.135	0.072393	29.127	29.103	29.175	-0.0077229	69	52	1.5776473	0.030021429	1.5761279	319.8784	0	6.087036						96	4	2	NaN	NaN	NaN	0.01966	1	12930	12930		72.428	40.753	1	9767.8			19131	2457	10925	11271	15231	15231					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2927564154502	2	556.292756	1110.57096	1.3164	0.00073229	2.7364	0.0015223	4.0528	0.0022545	556.2947636236099	29.135	0.21721	29.127	29.055	29.272	-0.0077229	1212	79	0.8910048	0.047801137	0.88948536	361.31015	0	19.38379						376	10	2	NaN	NaN	NaN	0.036546	1	12933	12933		52.624	24.835	1	130760			19132	2457	10925	11271	15232	15232					0.020097256147437292
NYRTLEFL	8	Unmodified	_NYRTLEFL_					0	0	0		nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30;ENST00000461003.5_1_1:161022982-161039420:-|nuORF;nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5520216138002	1	1055.55202	1054.54475	1.1934	0.0012597	-8.1126	-0.0085633	-6.9192	-0.0073036	1055.5413977659648	33.84	0.19308	33.839	33.766	33.959	-0.0018463	90	118	1.5652816	0.06896758	1.5637622	317.5782	0	13.992767						463	9	3	NaN	NaN	NaN	0.43738	1	10615	10615		34.439	5.5432	1	107590			19133	5478	10926	11272	15233	15233					0.019654564432585175
NYSDAIVWL	9	Unmodified	_NYSDAIVWL_					0	0	0		ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5360371985998	1	1080.53604	1079.52876	1.217	0.001315	-4.0608	-0.0043878	-2.8439	-0.0030729	1081.5339046716067	32.756	0.28956	32.756	32.683	32.973	0	111	130	1.5529068	0.07607341	1.5529068	314.97327	0	15.42984						750	13	4	NaN	NaN	NaN	0.070055	1	11956	11956		40.154	16.819	1	108080			19134	2874	10927	11273	15234	15234					-0.007822497936786021
NYSDAIVWL	9	Unmodified	_NYSDAIVWL_					0	0	0		ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5360371985998	1	1080.53604	1079.52876	1.5349	0.0016585	-4.6042	-0.004975	-3.0693	-0.0033165	1081.534073987455	32.755	0.33781	32.752	32.631	32.969	-0.0031013	102	130	1.5582114	0.0760653	1.556692	316.0492	0	15.428192						841	15	5	NaN	NaN	NaN	0.026295	1	11651	11651		63.958	40.624	1	109080			19135	2874	10927	11273	15235	15235					-0.007822497936786021
NYSFVCNSLTF	11	Unmodified	_NYSFVCNSLTF_					0	0	0			REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.7922632764501	2	647.792263	1293.56997	0.76516	0.00049566	-3.5956	-0.0023292	-2.8305	-0.0018336	647.7904209987423	35.289	0.072403	35.289	35.241	35.313	0	1131	49	0.94059354	0.029346347	0.94059354	380.7567	0	11.879517						121	4	4	NaN	NaN	NaN	0.57257	1	18644	18644		15.822	0.96793	1	11539	+		19136	12103	10928	11274	15236	15236					-0.06506856816508844
NYSFVCNSLTF	11	Unmodified	_NYSFVCNSLTF_					0	0	0			REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.7922632764501	2	647.792263	1293.56997	1.5074	0.00097647	-3.9407	-0.0025527	-2.4333	-0.0015763	647.7897974384148	33.913	0.33788	33.911	33.815	34.153	-0.0012474	1131	79	0.94059354	0.047677517	0.93907416	380.7567	0	19.30008						736	15	6	NaN	NaN	NaN	0.20314	1	17808	17808		30.035	3.9205	1	381330	+		19137	12103	10928	11274	15237	15237					-0.06506856816508844
NYSFVCNSLTF	11	Unmodified						0	0	0			REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	647.792263	1293.56997	0.76516	0.00049566	-3.5956	-0.0023292	-2.8305	-0.0018336	647.7904209987423	35.289	0.072403	35.289	35.241	35.313	0	1131	49	0.94059354	0.029346347	0.94059354	380.7567		11.879517	0.14554	0.00099926	0.00075972	NaN	15.822	121	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11539	+		19138	12103	10928	11274							-0.06506856816508844
NYSFVCNSLTF	11	Unmodified						0	0	0			REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	REV__ENST00000419821.6_1_12:118587740-118587944:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	647.792263	1293.56997	1.7203	0.0011144	-5.9675	-0.0038657	-4.2472	-0.0027513	647.7886571262268	34.998	0.096462	34.998	34.901	34.998	-4.5776E-05	1131	31	0.94059354	0.018339515	0.93907416	380.7567		7.423889	-0.14554	-0.0020737	-0.00075972	NaN	15.822	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4980.5	+		19139	12103	10928	11274							-0.06506856816508844
NYSGAAEYLYF	11	Unmodified	_NYSGAAEYLYF_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.29041069175	2	649.290411	1296.56627	2.039	0.0013239	-2.0418	-0.0013257	-0.0027383	-1.778E-06	649.2885940044622	29.884	0.24132	29.884	29.811	30.053	0	1128	103	0.9424274	0.06233406	0.9424274	381.48975	0	25.232513						601	11	6	NaN	NaN	NaN	2.2201E-07	1	18710	18710		96.341	62.916	1	148770			19140	1471	10929	11275	15238	15238					-0.07015203318724161
NYSGAAEYLYF	11	Unmodified	_NYSGAAEYLYF_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.29041069175	2	649.290411	1296.56627	1.2998	0.00084396	-0.69017	-0.00044812	0.60965	0.00039584	649.2901068347356	29.883	0.36197	29.876	29.707	30.069	-0.0070667	1125	88	0.9442611	0.053175867	0.94274163	382.23196	0	21.52533						598	16	5	NaN	NaN	NaN	1.6837E-15	1	17874	17874		119.15	78.997	1	182340			19141	1471	10929	11275	15239	15239					-0.07015203318724161
NYSIVDFLI	9	Unmodified	_NYSIVDFLI_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5720883539	1	1083.57209	1082.56481	0.71434	0.00077404	0.65529	0.00071005	1.3696	0.0014841	1083.573471225603	37.963	0.12018	37.963	37.891	38.011	0	99	58	1.5599792	0.033581734	1.5599792	316.39655	0	6.811096						185	6	3	NaN	NaN	NaN	0.030696	1	12104	12104		58.2	27.589	1	16819			19142	1499	10930	11276	15240	15240					0.026832073831883463
NYSIVDFLI	9	Unmodified	_NYSIVDFLI_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5720883539	1	1083.57209	1082.56481	1.5616	0.0016921	2.6661	0.0028889	4.2277	0.004581	1083.575867665686	37.937	0.12019	37.94	37.892	38.012	0.0034256	93	76	1.5635144	0.044167757	1.5619949	317.11353	0	8.95816						153	6	2	NaN	NaN	NaN	0.026295	1	11790	11790		63.958	26.656	1	15778			19143	1499	10930	11276	15241	15241					0.026832073831883463
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7934549072	2	594.793455	1187.57236	1.1614	0.00069081	2.2945	0.0013648	3.4559	0.0020556	594.79543807665	24.212	0.12061	24.199	24.127	24.248	-0.012749	1191	106	0.90387505	0.06426096	0.9023556	366.2377	0	26.037659						221	6	2	NaN	NaN	NaN	0.01966	1	15470	15470		72.428	41.818	1	95047			19144	3219	10931	11277	15242	15242					-0.01392640296535319
NYSPGFNQNAD	11	Unmodified	_NYSPGFNQNAD_					0	0	0			REV__nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	REV__nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.7572663661501	2	613.757266	1225.49998	1.1227	0.00068905	-10.252	-0.006292	-9.129	-0.005603	613.7515080613123	25.057	0.21712	25.045	24.948	25.165	-0.012011	1170	103	0.91673553	0.062482238	0.9152161	371.3166	0	25.307953						388	10	4	NaN	NaN	NaN	0.63477	1	16428	16428		11.739	0.19041	1	66815	+		19145	10378	10932	11278	15243	15243					-0.10375019160733245
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.76128911155	2	583.761289	1165.50803	1.708	0.00099706	0.64786	0.0003782	2.3559	0.0013753	583.7611537365001	27.109	0.21717	27.109	27.06	27.277	0	1191	55	0.90387505	0.03307879	0.90387505	366.31732	0	13.406006						214	10	3	NaN	NaN	NaN	0.070055	1	15313	15313		40.154	22.355	1	44591			19146	3906	10933	11279	15244	15244					-0.0681084017332978
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1166.5153017564999	1	1166.5153	1165.50803	2.4014	0.0028013	0.58152	0.00067836	2.9829	0.0034796	1166.5148933469218	27.084	0.12068	27.084	27.084	27.205	0	60	58	1.582944	0.03354621	1.582944	320.7665	0	6.7977905						143	6	3	NaN	NaN	NaN	0.0035249	1	15315	15315		106.42	59.289	1	11813			19147	3906	10933	11279	15245	15245					-0.0681084017332978
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.76128911155	2	583.761289	1165.50803	1.2378	0.00072257	1.4219	0.00083007	2.6597	0.0015526	583.7620298127769	27.108	0.21721	27.098	27.025	27.242	-0.010126	1191	70	0.90387505	0.042274177	0.9023556	366.3173	0	17.13263						223	10	3	NaN	NaN	NaN	0.25548	1	14785	14785		21.771	9.7224	1	44177			19148	3906	10933	11279	15246	15246					-0.0681084017332978
NYSPYVNYF	9	Unmodified						0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1166.5153	1165.50803	2.2542	0.0026296	-0.49456	-0.00057691	1.7597	0.0020527	1167.5163737976677	27.108	0.07238	27.098	27.074	27.146	-0.010126	66	58	1.579413	0.033549786	1.5778936	320.051		6.7984924	0.0066244	-0.00076488	-0.0025252	NaN	106.42	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4694.2			19149	3906	10933	11279							-0.0681084017332978
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2541625712001	2	561.254163	1120.49377	2.3307	0.0013081	2.8494	0.0015992	5.1801	0.0029074	561.2549858729158	18.58	0.096006	18.58	18.532	18.628	0	1224	40	0.883646	0.02391994	0.883646	358.2872	0	9.698669						114	5	3	NaN	NaN	NaN	0.03533	1	13695	13695		53.14	27.025	1	16297			19150	2823	10934	11280	15247	15247					-0.061654926015989986
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.S1521R|1|0.65|ENSG00000133401|chr5:32088011-32088011|C/A|missense_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2541625712001	2	561.254163	1120.49377	1.8197	0.0010213	3.7302	0.0020936	5.5499	0.0031149	561.2561890290224	18.626	0.14398	18.612	18.564	18.708	-0.014059	1230	55	0.8799654	0.033132493	0.878446	356.79486	0	13.434021						102	7	2	NaN	NaN	NaN	0.34922	1	13291	13291		15.822	1.3969	1	17740			19151	2823	10934	11280	15248	15248					-0.061654926015989986
NYSSAVQKF	9	Unmodified	_NYSSAVQKF_					0	0	0		OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant;nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1	OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant	OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2614562870501	2	522.261456	1042.50836	1.8236	0.00095242	0.0029911	1.5621E-06	1.8266	0.00095398	522.2616829818049	16.782	0.071955	16.782	16.758	16.83	0	1296	31	0.8394264	0.01844871	0.8394264	340.66696	0	7.4871216						50	4	2	NaN	NaN	NaN	0.53317	1	10319	10319		8.2448	2.5507	1	3328.6			19152	895	10935	11281	15249	15249					-0.011194204534604069
NYSSAVQKF	9	Unmodified						0	0	0		OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant;nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1	OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant	OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	522.261456	1042.50836	2.2208	0.0011599	-0.97134	-0.00050729	1.2495	0.00065256	522.2606078589308	16.802	0.071898	16.789	16.765	16.837	-0.013294	1299	34	0.8375814	0.020296931	0.83606195	339.9182		8.237183	0.0037125	-0.00048509	-0.0016822	NaN	8.2448	74	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4040.7			19153	895	10935	11281							-0.011194204534604069
NYSYLHCEW	9	Unmodified	_NYSYLHCEW_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.75039846175	2	607.750398	1213.48624	1.2333	0.00074957	0.63337	0.00038493	1.8667	0.0011345	608.2532650643413	23.899	0.2169	23.899	23.778	23.995	0	1182	79	0.9093879	0.047765017	0.9093879	368.38104	0	19.348969						303	10	4	NaN	NaN	NaN	0.14787	1	16810	16810		28.896	15.893	1	29436			19154	107;5067	10936	11282	15250	15250					-0.11195968193555927
NYTARFSRF	9	Unmodified	_NYTARFSRF_					0	0	0		ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.8648402106667	3	387.86484	1160.57269	1.6116	0.00062507	-1.7346	-0.00067277	-0.12299	-4.7705E-05	387.8641849090065	16.997	0.19206	16.997	16.949	17.141	0	1476	37	0.72837335	0.022282898	0.72837335	442.80402	0	13.54657						163	9	3	NaN	NaN	NaN	0.40649	1	15164	15164		12.307	6.3869	1	26274			19155	3468	10937	11283	15251	15251					-0.0011722057665792818
NYTARFSRF	9	Unmodified	_NYTARFSRF_					0	0	0		ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.8648402106667	3	387.86484	1160.57269	1.6857	0.00065382	-1.0731	-0.00041624	0.61255	0.00023759	387.86423442529593	17.138	0.26396	17.124	17.052	17.316	-0.013569	1476	40	0.72837335	0.02413851	0.7268539	442.80402	0	14.674652						240	12	4	NaN	NaN	NaN	0.34922	1	14652	14652		10.861	0.50126	1	31487			19156	3468	10937	11283	15252	15252					-0.0011722057665792818
NYTARFSRF	9	Unmodified	_NYTARFSRF_					0	0	0		ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	ENSG00000144231|ENST00000272645|POLR2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2936220827002	2	581.293622	1160.57269	1.8645	0.0010838	0.08043	4.6754E-05	1.9449	0.0011306	581.294264127143	17.138	0.26396	17.124	17.052	17.316	-0.013569	1188	73	0.90571284	0.044124186	0.9041934	367.08038	0	17.88327						336	12	3	NaN	NaN	NaN	0.21462	1	14653	14653		24.393	10.352	1	56758			19157	3468	10937	11283	15253	15253					-0.0011722057665792818
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7796788299501	2	572.779679	1143.5448	1.5276	0.000875	-0.51567	-0.00029537	1.012	0.00057963	572.779707527579	24.406	0.28944	24.406	24.333	24.623	0	1224	103	0.883646	0.062570035	0.883646	358.19943	0	25.363739						578	13	4	NaN	NaN	NaN	0.012018	1	14577	14577		86.792	42.154	1	116890			19158	1892	10938	11284	15254	15254					-0.021225883474244256
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7796788299501	2	572.779679	1143.5448	1.1828	0.00067748	-0.28183	-0.00016143	0.90096	0.00051605	572.7795345574872	24.429	0.21718	24.417	24.368	24.586	-0.012749	1224	97	0.883646	0.058895826	0.88212657	358.19943	0	23.874329						348	10	2	NaN	NaN	NaN	0.055363	1	14097	14097		44.633	17.337	1	99989			19159	1892	10938	11284	15255	15255					-0.021225883474244256
NYTDQWERW	9	Unmodified	_NYTDQWERW_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2834513269	2	649.283451	1296.55235	1.9062	0.0012377	-0.83911	-0.00054482	1.0671	0.00069286	649.2831535793867	23.393	0.24108	23.393	23.345	23.586	0	1194	43	0.902037	0.025736272	0.902037	365.13995	0	10.417938						214	11	3	NaN	NaN	NaN	0.046683	1	18707	18707		61.199	22.929	1	23071			19160	4518	10939	11285	15256	15256					-0.08406436027144082
NYTDQWERW	9	Unmodified	_NYTDQWERW_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.2834513269	2	649.283451	1296.55235	1.8058	0.0011725	-1.5817	-0.001027	0.22407	0.00014549	649.2824996185718	23.392	0.14485	23.379	23.355	23.5	-0.013296	1197	37	0.9001988	0.022057295	0.8986794	364.39584	0	8.92868						137	7	4	NaN	NaN	NaN	0.38254	1	17873	17873		15.822	5.5782	1	14603			19161	4518	10939	11285	15257	15257					-0.08406436027144082
NYTEIREKL	9	Unmodified	_NYTEIREKL_					0	0	0		ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B	ENST00000510479.5_1_5:176948978-176959043:-|nuORF	ENST00000510479.5_1_5:176948978-176959043:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3142201390501	2	583.31422	1164.61389	2.6479	0.0015446	-2.8133	-0.0016411	-0.16544	-9.6505E-05	583.312288500052	16.443	0.095861	16.43	16.406	16.502	-0.012995	1143	31	0.9332562	0.01834935	0.93173677	378.22815	0	7.4365845						52	5	2	NaN	NaN	NaN	0.27608	1	14777	14777		20.449	8.7098	1	3513.4			19162	7352	10940	11286	15258	15258					0.03816495672140263
NYTEWLQDL	9	Unmodified	_NYTEWLQDL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2773033165001	2	591.277303	1180.54005	1.3541	0.00080066	-1.3268	-0.00078449	0.027343	1.6167E-05	591.2764326250898	31.79	0.28964	31.79	31.742	32.032	0	1185	118	0.90755045	0.07165921	0.90755045	367.75208	0	29.037323						723	13	3	NaN	NaN	NaN	0.017558	1	15837	15837		75.089	29.262	1	335250			19163	2477	10941	11287	15259	15259					-0.04299472490174594
NYTEWLQDL	9	Unmodified	_NYTEWLQDL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.2773033165001	2	591.277303	1180.54005	0.80872	0.00047818	-0.49686	-0.00029378	0.31186	0.0001844	591.2769326049461	31.789	0.41031	31.785	31.688	32.099	-0.0044174	1182	112	0.9093879	0.06796968	0.90786844	368.49664	0	27.542267						827	18	4	NaN	NaN	NaN	0.0035249	1	15253	15253		106.42	48.027	1	348630			19164	2477	10941	11287	15260	15260					-0.04299472490174594
NYTKAMRLF	9	Unmodified	_NYTKAMRLF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3026012077501	2	572.302601	1142.59065	1.8314	0.0010481	-3.7034	-0.0021195	-1.872	-0.0010714	572.2999457870302	19.708	0.1441	19.708	19.684	19.828	0	1182	46	0.9093879	0.027564168	0.9093879	368.63797	0	11.173676						151	7	3	NaN	NaN	NaN	0.054111	1	14550	14550		45.165	8.9301	1	14967			19165	5269	10942	11288	15261	15261					0.02505778353815913
NYTKAMRLF	9	Unmodified	_NYTKAMRLF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3026012077501	2	572.302601	1142.59065	1.3263	0.00075903	-0.46235	-0.0002646	0.86392	0.00049442	572.8036322061383	19.9	0.1444	19.885	19.813	19.958	-0.014141	1182	58	0.9093879	0.034918368	0.90786844	368.63797	0	14.154877						98	7	2	NaN	NaN	NaN	0.27608	1	14071	14071		20.449	6.4071	1	8914.9			19166	5269	10942	11288	15262	15262					0.02505778353815913
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2952991044001	2	530.295299	1058.57605	2.0189	0.0010706	-1.6161	-0.00085702	0.40276	0.00021358	530.2946505287382	25.371	0.14478	25.371	25.346	25.491	0	1248	67	0.8689189	0.040525913	0.8689189	352.56622	0	16.443481						235	7	4	NaN	NaN	NaN	0.0072287	1	11039	11039		98.041	63.602	1	43792			19167	4518	10943	11289	15263	15263					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2952991044001	2	530.295299	1058.57605	1.4185	0.00075222	-0.42954	-0.00022778	0.98895	0.00052444	530.294902277116	25.394	0.16889	25.382	25.358	25.527	-0.012011	1248	64	0.8689189	0.038685918	0.86739945	352.56622	0	15.696899						209	8	4	NaN	NaN	NaN	0.014046	1	10803	10803		80.639	46.2	1	37743			19168	4518	10943	11289	15264	15264					0.049100294773325004
NYTSLLVTW	9	Unmodified	_NYTSLLVTW_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1-TSPAN33|2|fusion	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7873068968001	2	548.787307	1095.56006	0.97143	0.00053311	-2.9867	-0.0016391	-2.0153	-0.0011059	548.7855474134584	32.201	0.096508	32.201	32.177	32.273	0	1263	46	0.85970795	0.027638733	0.85970795	348.67758	0	11.209656						115	5	3	NaN	NaN	NaN	0.017076	1	12652	12652		75.698	44.137	1	19209			19169	1593	10944	11290	15265	15265					0.01610323240447542
NYTYVMEHL	9	Unmodified	_NYTYVMEHL_					0	0	0		nc|ENSG00000163141|Q7Z465-3|BNIPL;nc|ENSG00000163141|Q7Z465-2|BNIPL;ENSG00000163141|ENST00000368931|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2684240394002	2	585.268424	1168.5223	1.6641	0.00097396	1.6834	0.00098525	3.3476	0.0019592	585.2683940638666	23.175	0.096548	23.162	23.138	23.234	-0.013294	1179	100	0.9112251	0.06068057	0.90970564	369.28494	0	24.591522						262	5	4	NaN	NaN	NaN	0.27608	1	14891	14891		20.449	9.4835	1	22363			19170	4205	10945	11291	15266	15266					-0.05522511016670251
NYVDLVSSL	9	Unmodified	_NYVDLVSSL_					0	0	0		ENST00000464057.5_1_6:4126367-4135774:-|nuORF;ENST00000464583.5_1_6:4126367-4133998:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2	ENST00000464057.5_1_6:4126367-4135774:-|nuORF	ENST00000464057.5_1_6:4126367-4135774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5200527834	1	1009.52005	1008.51278	1.5698	0.0015847	-1.2162	-0.0012278	0.35356	0.00035693	1010.5213618742202	29.859	0.024122	29.852	29.852	29.876	-0.0070648	222	88	1.4873441	0.051446915	1.4858247	301.94333	0	10.444153						86	2	2	NaN	NaN	NaN	0.084037	1	8751	8751		38.131	20.332	1	6216.1			19171	5797	10946	11292	15267	15267					0.008860439694331035
NYVEDIPFL	9	Unmodified	_NYVEDIPFL_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.5513529118	1	1109.55135	1108.54408	1.1828	0.0013124	-10.371	-0.011507	-9.1882	-0.010195	1109.5397643575773	33.673	0.19298	33.673	33.576	33.769	0	114	97	1.5511382	0.056555748	1.5511382	314.5106	0	11.467316						443	9	3	NaN	NaN	NaN	0.021751	1	13227	13227		69.782	30.864	1	56482			19172	4186	10947	11293	15268	15268					-0.005853829964735269
NYVEEKLIPTW	11	Unmodified	_NYVEEKLIPTW_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3639099858501	2	696.36391	1390.71327	1.0401	0.00072431	-1.9849	-0.0013822	-0.94482	-0.00065794	696.3630695863044	27.084	0.072426	27.084	27.06	27.133	0	1059	58	0.98455137	0.034768105	0.98455137	398.25674	0	14.063873						142	4	3	NaN	NaN	NaN	0.70497	1	19992	19992		7.1304	1.9415	1	10553			19173	1478	10948	11294	15269	15269					0.033538935662363656
NYVEEKLIPTW	11	Unmodified	_NYVEEKLIPTW_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3639099858501	2	696.36391	1390.71327	0.8226	0.00057283	-1.7654	-0.0012294	-0.94285	-0.00065656	696.3630580430236	27.108	0.14481	27.098	27.049	27.194	-0.010126	1059	52	0.98455137	0.03110826	0.9830319	398.25674	0	12.583496						164	7	5	NaN	NaN	NaN	0.00427	1	19053	19053		74.865	59.043	1	11587			19174	1478	10948	11294	15270	15270					0.033538935662363656
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8169300035001	2	597.81693	1193.61931	1.7772	0.0010624	-1.7814	-0.0010649	-0.0041703	-2.4931E-06	597.8160180293942	17.069	0.24008	17.069	17.021	17.261	0	1167	64	0.91857195	0.03857732	0.91857195	372.17105	0	15.630096						410	11	5	NaN	NaN	NaN	0.0027142	1	16265	16265		121.31	78.992	1	149080			19175	4877	10949	11295	15271	15271					0.0302421925462113
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8169300035001	2	597.81693	1193.61931	1.5927	0.00095213	-0.96414	-0.00057638	0.62853	0.00037575	597.8160349811689	17.138	0.26391	17.124	17.076	17.34	-0.013569	1167	61	0.91857195	0.036738336	0.9170525	372.17105	0	14.88501						449	12	4	NaN	NaN	NaN	0.010556	1	15639	15639		101.27	51.313	1	163850			19176	4877	10949	11295	15272	15272					0.0302421925462113
NYVGFINYL	9	Unmodified	_NYVGFINYL_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8;ENST00000528806.5_1_14:23598711-23607206:-|nuORF;ENST00000397310.6_1_14:23596388-23599053:-|nuORF;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5567726407	1	1102.55677	1101.5495	1.383	0.0015249	-1.1268	-0.0012423	0.25625	0.00028253	1102.5553606447488	32.466	0.21719	32.466	32.321	32.539	0	60	88	1.582944	0.051223755	1.582944	320.98462	0	10.387024						330	10	3	NaN	NaN	NaN	0.074859	1	12905	12905		39.459	21.489	1	32548			19177	1087	10950	11296	15273	15273					0.0027834058601001743
NYVIGSSFEF	10	Unmodified	_NYVIGSSFEF_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.18535648006673	3	388.185356	1161.53424	1.3999	0.00054342	-0.31033	-0.00012046	1.0896	0.00042296	388.1850354950136	21.368	0.28885	21.354	21.258	21.547	-0.014006	1500	40	0.71351165	0.024159491	0.7119922	433.76483	0	14.687256						255	13	3	NaN	NaN	NaN	0.37681	1	14681	14681		19.592	0	1	35194	+		19178	9577	10951	11297	15274	15274					-0.04006571001832526
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3114804848501	2	554.31148	1106.60841	1.6582	0.00091917	-0.27352	-0.00015161	1.3847	0.00076755	554.311047001805	18.82	0.096041	18.82	18.796	18.892	0	1182	34	0.9093879	0.020211518	0.9093879	368.78085	0	8.19632						101	5	3	NaN	NaN	NaN	0.34922	1	13140	13140		15.822	0.80903	1	9097			19179	3481	10952	11298	15275	15275					0.05936816880330298
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.3114804848501	2	554.31148	1106.60841	1.655	0.00091736	0.32076	0.0001778	1.9757	0.0010952	554.3115935890643	18.962	0.12017	18.948	18.876	18.996	-0.014059	1182	34	0.9093879	0.020211518	0.90786844	368.78085	0	8.19632						112	6	3	NaN	NaN	NaN	0.25548	1	12772	12772		21.771	7.346	1	9333.1			19180	3481	10952	11298	15276	15276					0.05936816880330298
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENSG00000109536|ENST00000226798|FRG1	ENSG00000109536|ENST00000226798|FRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8085736551501	2	580.808574	1159.60259	1.9973	0.00116	-0.81852	-0.0004754	1.1788	0.00068463	580.8080852799408	16.758	0.21581	16.758	16.71	16.925	0	1179	43	0.9112251	0.025716841	0.9112251	369.31808	0	10.423004						201	10	3	NaN	NaN	NaN	0.097143	1	15131	15131		36.235	15.722	1	27484			19181	1724	10953	11299	15277	15277					0.029177183686670105
NYVKKFQSF	9	Unmodified	_NYVKKFQSF_					0	0	0		ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENSG00000109536|ENST00000226798|FRG1	ENSG00000109536|ENST00000226798|FRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8085736551501	2	580.808574	1159.60259	1.7493	0.001016	-0.44855	-0.00026052	1.3007	0.00075547	580.8082594559596	16.922	0.23971	16.909	16.813	17.053	-0.013294	1179	37	0.9112251	0.022045374	0.90970564	369.31808	0	8.934967						193	11	2	NaN	NaN	NaN	0.084037	1	14625	14625		38.131	20.332	1	30588			19182	1724	10953	11299	15278	15278					0.029177183686670105
NYVNILATI	9	Unmodified	_NYVNILATI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5724227049003	1	1020.57242	1019.56515	2.0766	0.0021193	4.6878	0.0047842	6.7644	0.0069035	1020.5735277644728	32.056	0.12066	32.056	32.008	32.128	0	150	94	1.5299006	0.054919124	1.5299006	310.5372	0	11.14743						235	6	3	NaN	NaN	NaN	0.10956	1	9355	9355		34.439	7.7072	1	27919			19183	1955	10954	11300	15279	15279					0.05614627103068415
NYVNILATI	9	Unmodified	_NYVNILATI_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5724227049003	1	1020.57242	1019.56515	1.0665	0.0010885	6.1094	0.0062351	7.1759	0.0073235	1021.5858437383177	32.079	0.19304	32.075	32.003	32.196	-0.0037613	141	94	1.5352125	0.0549134	1.5336931	311.61542	0	11.14624						235	9	2	NaN	NaN	NaN	0.03623	1	9168	9168		52.758	32.203	1	27628			19184	1955	10954	11300	15280	15280					0.05614627103068415
NYVPVNHFW	9	Unmodified	_NYVPVNHFW_					0	0	0		ENST00000565298.5_1_16:1576517-1634259:-|nuORF;ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENST00000565298.5_1_16:1576517-1634259:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.2852657343501	2	588.285266	1174.55598	1.5016	0.00088337	-0.94906	-0.00055832	0.55254	0.00032505	588.7851102168601	24.478	0.19291	24.478	24.381	24.574	0	1176	115	0.9130621	0.06984818	0.9130621	370.00726	0	28.305115						419	9	4	NaN	NaN	NaN	0.20577	1	15629	15629		24.961	7.162	1	79530			19185	5508	10955	11301	15281	15281					-0.02431721462630776
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7587464226001	2	549.758746	1097.50294	1.9005	0.0010448	-3.7256	-0.0020482	-1.8251	-0.0010034	549.756196830238	25.588	0.14474	25.588	25.564	25.708	0	1293	97	0.84127116	0.0589723	0.84127116	341.19257	0	23.917267						354	7	3	NaN	NaN	NaN	0.0018626	1	12729	12729		111.43	58.675	1	74347			19186	2793;7442	10956	11302	15282	15282					-0.04191144035939942
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5102163786	1	1098.51022	1097.50294	2.451	0.0026925	-0.75215	-0.00082625	1.6989	0.0018662	1098.5092365238238	25.588	0.21712	25.588	25.539	25.757	0	117	103	1.5493695	0.060160518	1.5493695	314.1908	0	12.199738						556	10	3	NaN	NaN	NaN	0.00012056	1	12730	12730		121.66	69.035	1	135590			19187	2793;7442	10956	11302	15283	15283					-0.04191144035939942
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7587464226001	2	549.758746	1097.50294	2.0596	0.0011323	-5.0006	-0.0027491	-2.941	-0.0016168	549.7557556846186	25.588	0.21712	25.576	25.528	25.745	-0.0116	1293	109	0.84127116	0.06633663	0.8397517	341.19257	0	26.904022						587	10	4	NaN	NaN	NaN	0.089764	1	12397	12397		37.302	2.0059	1	96467			19188	2793;7442	10956	11302	15284	15284					-0.04191144035939942
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850915-61851251:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5102163786	1	1098.51022	1097.50294	2.6602	0.0029223	-0.85298	-0.00093701	1.8072	0.0019853	1098.508928400125	25.588	0.38605	25.576	25.455	25.841	-0.0116	114	106	1.5511382	0.061920166	1.5496187	314.54947	0	12.55658						777	17	4	NaN	NaN	NaN	0.00019594	1	12399	12399		117.07	56.084	1	145550			19189	2793;7442	10956	11302	15285	15285					-0.04191144035939942
NYVVIGTCTF	10	Unmodified	_NYVVIGTCTF_					0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENST00000548994.1_1_12:102509600-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1116.5394080170001	1	1116.53941	1115.53213	1.7183	0.0019186	-1.4774	-0.0016496	0.24091	0.00026899	1116.5369273378808	29.329	0.16889	29.329	29.256	29.425	0	66	70	1.579413	0.040630102	1.579413	320.21893	0	8.237579						197	8	2	NaN	NaN	NaN	0.00909	1	13495	13495		72.428	47.866	1	16056			19190	830	10957	11303	15286	15286					-0.02101323011288514
NYVVIGTCTF	10	Unmodified	_NYVVIGTCTF_					0	0	0		ENSG00000075188|ENST00000552283|NUP37;ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENST00000548994.1_1_12:102509600-102512308:-|nuORF	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.5394080170001	1	1116.53941	1115.53213	1.1469	0.0012806	-1.0142	-0.0011324	0.13273	0.0001482	1116.5390799684433	29.352	0.24128	29.344	29.224	29.465	-0.0077209	69	70	1.5776473	0.040634394	1.5761279	319.86093	0	8.238434						198	11	2	NaN	NaN	NaN	0.019898	1	13104	13104		63.731	26.428	1	14132			19191	830	10957	11303	15287	15287					-0.02101323011288514
NYWLSHADAR	10	Unmodified	_NYWLSHADAR_					0	0	0			REV__ENSG00000131019|ENST00000367339|ULBP3	REV__ENSG00000131019|ENST00000367339|ULBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.79398622345	2	616.793986	1231.57342	2.426	0.0014963	-5.695	-0.0035126	-3.269	-0.0020163	616.7897201109369	25.853	0.38618	25.841	25.793	26.179	-0.0116	1140	133	0.93509084	0.08080709	0.9335714	378.73044	0	32.728485						894	17	3	NaN	NaN	NaN	0.10101	1	16580	16580		45.827	7.6957	1	988940	+		19192	9504	10958	11304	15288	15288					-0.03310425927634242
NYWRNRVMMV	10	Unmodified	_NYWRNRVMMV_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.83681655335	2	684.836817	1367.65908	2.0828	0.0014264	7.1631	0.0049055	9.2458	0.0063319	684.8414625636289	23.513	0.072292	23.513	23.489	23.562	0	1107	34	0.9552588	0.020157099	0.9552588	386.4718	0	8.154999						73	4	3	NaN	NaN	NaN	0.75966	1	19775	19775		3.9685	1.6304	1	5850.8			19193	4519	10959	11305	15289	15289					-0.010043003379905713
NYWRNRVMMV	10	Unmodified						0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	684.836817	1367.65908	2.3248	0.0015921	4.9132	0.0033648	7.2381	0.0049569	684.8390050957819	23.537	0.072306	23.524	23.5	23.572	-0.01305	1110	46	0.95342636	0.027478099	0.9519069	385.73044		11.116882	0.005343	-0.0017083	-0.001676	NaN	3.9685	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5898			19194	4519	10959	11305							-0.010043003379905713
NYWVFLTEGD	10	Unmodified	_NYWVFLTEGD_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|53|2|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|53|2|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|53|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2851283486001	2	622.285128	1242.5557	1.1128	0.00069246	-4.166	-0.0025924	-3.0532	-0.0019	622.282896416779	24.864	0.21711	24.851	24.731	24.948	-0.012392	1140	91	0.93509084	0.05505997	0.9335714	378.69333	0	22.298218						507	10	4	NaN	NaN	NaN	0.27719	1	16837	16837		28.896	1.5994	1	142720			19195	13708	10960	11306	15290	15290					-0.05587185973126907
NYYAFFKLL	9	Unmodified	_NYYAFFKLL_					0	0	0		nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;ENST00000476968.5_1_1:32560475-32568271:+|nuORF	nc|ENSG00000121775|Q9GZU3-4|TMEM39B	nc|ENSG00000121775|Q9GZU3-4|TMEM39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.8158673710001	2	589.815867	1177.61718	0.39113	0.00023069	-0.64914	-0.00038287	-0.25801	-0.00015218	589.8146523106581	31.862	0.16891	31.857	31.809	31.978	-0.0044155	1158	85	0.92408	0.051433682	0.9225606	374.46085	0	20.842255						165	8	4	NaN	NaN	NaN	0.44834	1	15181	15181		17.799	10.815	1	21551			19196	2301	10961	11307	15291	15291					0.0354779051681362
NYYESFSL	8	Unmodified	_NYYESFSL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.72691497795	2	511.726915	1021.43928	2.1615	0.0011061	-3.7117	-0.0018994	-1.5503	-0.00079332	511.7249609236561	25.491	0.096497	25.491	25.467	25.564	0	1356	91	0.8024889	0.055418193	0.8024889	325.76407	0	22.496582						115	5	2	NaN	NaN	NaN	0.81251	1	9420	9420		7.5404	0.67717	1	10517			19197	763	10962	11308	15292	15292					-0.07058504473036464
NYYEVHKELF	10	Unmodified	_NYYEVHKELF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3273275143	2	671.327328	1340.6401	1.7069	0.0011459	-1.1305	-0.00075895	0.57641	0.00038696	671.32636386648	19.708	0.19212	19.708	19.66	19.852	0	1080	61	0.9717421	0.036623597	0.9717421	393.21982	0	14.819916						227	9	4	NaN	NaN	NaN	0.09317	1	19417	19417		48.319	42.625	1	39269			19198	5835	10963	11309	15293	15293					-0.016592351563986085
NYYEVHKELF	10	Unmodified	_NYYEVHKELF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3273275143	2	671.327328	1340.6401	1.3337	0.00089535	-1.045	-0.00070154	0.2887	0.00019381	671.3262948732055	19.755	0.14442	19.741	19.717	19.861	-0.014141	1080	58	0.9717421	0.03478682	0.97022265	393.21982	0	14.07666						238	7	4	NaN	NaN	NaN	0.073667	1	18551	18551		51.086	30.399	1	37966			19199	5835	10963	11309	15294	15294					-0.016592351563986085
NYYKVNWTF	9	Unmodified	_NYYKVNWTF_					0	0	0		ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	ENST00000518345.1_1_8:109254078-109254135:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.7982059341	2	617.798206	1233.58186	1.4908	0.00092104	1.1042	0.00068215	2.595	0.0016032	617.7994459891515	25.37	0.19304	25.358	25.286	25.479	-0.012011	1155	79	0.92591566	0.04772383	0.9243962	375.0075	0	19.328735						489	9	4	NaN	NaN	NaN	0.015029	1	16639	16639		78.289	49.794	1	109380			19200	7380	10964	11310	15295	15295					-0.02558872011013591
NYYPGSLF	8	Unmodified	_NYYPGSLF_					0	0	0		nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.F653Lfs*4|1|0.13|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4461595588002	1	960.44616	959.438883	1.602	0.0015387	0.18378	0.00017651	1.7858	0.0017152	960.4465994235511	28.17	0.2172	28.17	28.098	28.315	0	309	49	1.435777	0.028494716	1.435777	291.67572	0	5.7886353						197	10	3	NaN	NaN	NaN	0.43738	1	7308	7308		34.439	19.426	1	16417			19201	3310	10965	11311	15296	15296					-0.042458794022195434
NYYPGSLF	8	Unmodified	_NYYPGSLF_					0	0	0		nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.F653Lfs*4|1|0.13|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.4461595588002	1	960.44616	959.438883	1.229	0.0011804	-0.9784	-0.0009397	0.25062	0.00024071	960.4476685160819	28.17	0.16896	28.161	28.112	28.281	-0.0089779	309	52	1.435777	0.030274034	1.4342575	291.67575	0	6.150116						200	8	3	NaN	NaN	NaN	0.57691	1	7167	7167		26.732	8.9512	1	16736			19202	3310	10965	11311	15297	15297					-0.042458794022195434
NYYPGSLFLTW	11	Unmodified	_NYYPGSLFLTW_					0	0	0		nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.F653Lfs*4|1|0.13|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8322457167001	2	680.832246	1359.64994	1.3712	0.00093356	-2.4904	-0.0016955	-1.1192	-0.00076199	680.8305973809264	36.278	0.16873	36.278	36.229	36.398	0	1095	52	0.9625867	0.031145215	0.9625867	389.45947	0	12.601257						215	8	4	NaN	NaN	NaN	0.0099716	1	19674	19674		69.32	51.35	1	21033			19203	3310	10966	11312	15298	15298					-0.015500471509994895
NYYPGSLFLTW	11	Unmodified	_NYYPGSLFLTW_					0	0	0		nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.F653Lfs*4|1|0.13|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	nc|ENSG00000141298|Q76I76-4|SSH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8322457167001	2	680.832246	1359.64994	1.5038	0.0010238	-0.75352	-0.00051302	0.75023	0.00051078	680.832014746076	36.3	0.19271	36.301	36.229	36.422	0.0011024	1095	55	0.9625867	0.03297192	0.96106726	389.45944	0	13.340332						208	9	3	NaN	NaN	NaN	0.021881	1	18774	18774		61.199	38.113	1	20557			19204	3310	10966	11312	15299	15299					-0.015500471509994895
PAAAAFAKQ	9	Unmodified	_PAAAAFAKQ_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.7427024279	2	437.742702	873.470852	1.1887	0.00052035	-1.8135	-0.00079387	-0.62484	-0.00027352	437.74192027822846	15.414	0.14417	15.414	15.366	15.51	0	1398	49	0.77658504	0.029633284	0.77658504	315.95755	0	12.0564575						143	7	3	NaN	NaN	NaN	0.36492	1	5718	5718		15.175	2.1725	1	16269	+		19205	10610	10967	11313	15300	15300					0.02905533071566424
PAAAAFAKQ	9	Unmodified						0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	437.742702	873.470852	1.1887	0.00052035	-1.8135	-0.00079387	-0.62484	-0.00027352	437.74192027822846	15.414	0.14417	15.414	15.366	15.51	0	1398	49	0.77658504	0.029633284	0.77658504	315.95755		12.0564575	0.0069808	-8.1398E-05	0.0016856	NaN	15.175	143	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16269	+		19206	10610	10967	11313							0.02905533071566424
PAAAAHAA	8	Unmodified	_PAAAAHAA_					0	0	0		ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3521995941	1	679.3522	678.344923	1.8437	0.0012525	-2.179	-0.0014803	-0.33526	-0.00022776	679.3523424962277	53.338	0.1439	53.338	53.314	53.458	0	693	163	1.2062578	0.097429276	1.2062578	246.48189	0	19.90831						623	7	5	NaN	NaN	NaN	0.84876	1	2801	2801		0.39566	0	1	107220			19207	5938	10968	11314	15301	15301					-0.007115537138702166
PAAAPPCT	8	Unmodified	_PAAAPPCT_					0	0	0			REV__ENST00000325658.3_1_14:60716268-60717105:+|nuORF	REV__ENST00000325658.3_1_14:60716268-60717105:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3443370242	1	727.344337	726.337061	0.89334	0.00064977	-5.3486	-0.0038903	-4.4553	-0.0032405	727.3405655234802	35.215	0.169	35.215	35.191	35.36	-4.5776E-05	669	85	1.2206948	0.050534964	1.2191753	249.10579	0	10.312637						190	8	2	NaN	NaN	NaN	0.84876	1	3623	3623		0.39566	0	1	19343	+		19208	11735	10969	11315	15302	15302					-0.037054490256537065
PAAGCPGG	8	Unmodified	_PAAGCPGG_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2711720811002	1	629.271172	628.263896	1.6478	0.0010369	5.3794	0.0033851	7.0272	0.004422	629.2758653945463	18.77	0.11998	18.756	18.684	18.804	-0.014059	1188	58	0.90571284	0.034907043	0.9041934	185.36113	0	7.1440125						108	6	2	NaN	NaN	NaN	0.83849	1	1279	1279		4.0537	0	1	10265	+		19209	10733	10970	11316	15303	15303					-0.06510577748247215
PAAGPAPP	8	Unmodified	_PAAGPAPP_					0	0	0		nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	nc|ENSG00000021574|Q9UBP0-2|SPAST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479001	1	677.361702	676.354425	0.83345	0.00056455	9.0881	0.0061559	9.9216	0.0067205	677.3680617746058	30.438	0.21716	30.432	30.36	30.577	-0.0057545	762	142	1.1646824	0.08498573	1.163163	238.00032	0	17.366669						534	10	4	NaN	NaN	NaN	0.84876	1	2681	2681		0.39566	0	1	55457			19210	458	10971	11317	15304	15304					0.003302145716702398
PAAPGAGE	8	Unmodified	_PAAPGAGE_					0	0	0			REV__ENSG00000184221|ENST00000382348|OLIG1	REV__ENSG00000184221|ENST00000382348|OLIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.16375361515003	2	335.163754	668.312954	1.6014	0.00053673	6.262	0.0020988	7.8634	0.0026355	335.1662324681222	44.76	0.071857	44.76	44.712	44.784	0	1536	34	0.69119483	0.020469368	0.69119483	282.5472	0	8.367493						52	4	2	NaN	NaN	NaN	0.84876	1	2548	2548		0.39566	0	1	4050	+		19211	10914	10972	11318	15305	15305					-0.034469661876528335
PAAPGAGE	8	Unmodified						0	0	0			REV__ENSG00000184221|ENST00000382348|OLIG1	REV__ENSG00000184221|ENST00000382348|OLIG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	1.6014	0.00053673	6.262	0.0020988	7.8634	0.0026355	335.1662324681222	44.76	0.071857	44.76	44.712	44.784	0	1536	34	0.69119483	0.020469368	0.69119483	282.5472		8.367493	-0.076641	-0.00034844	0.00075972	NaN	0.39566	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4050	+		19212	10914	10972	11318							-0.034469661876528335
PAAPGAGE	8	Unmodified						0	0	0			REV__ENSG00000184221|ENST00000382348|OLIG1	REV__ENSG00000184221|ENST00000382348|OLIG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	335.163754	668.312954	1.0428	0.00034949	7.3023	0.0024475	8.345	0.002797	335.16655731958315	44.901	0.071815	44.913	44.889	44.961	0.011646	1536	34	0.69119483	0.020469368	0.6896754	282.54718		8.367462	0.076641	0.00034887	-0.00075972	NaN	0.39566	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3865.2	+		19213	10914	10972	11318							-0.034469661876528335
PAARPPAA	8	Unmodified	_PAARPPAA_					0	0	0		nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;nc|ENSG00000100095|Q9BYH1-4|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.7164876774	2	375.716488	749.418422	1.8617	0.00069949	-5.6289	-0.0021149	-3.7672	-0.0014154	375.71519441590146	23.513	0.048191	23.513	23.513	23.562	0	1446	34	0.7469324	0.02040279	0.7469324	304.67	0	8.322174						47	3	2	NaN	NaN	NaN	0.8439	1	4046	4046		3.1533	0	1	3925			19214	1192	10973	11319	15306	15306					0.033689947286120514
PAAVAGTS	8	Unmodified	_PAAVAGTS_					0	0	0		ENST00000423520.5_1_2:110371437-110371494:-|nuORF	ENST00000423520.5_1_2:110371437-110371494:-|nuORF	ENST00000423520.5_1_2:110371437-110371494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3515308921001	1	673.351531	672.344254	0.74268	0.00050009	3.2673	0.0022	4.01	0.0027001	673.3519008403283	33.454	0.096539	33.452	33.38	33.476	-0.0018501	774	43	1.1574414	0.025337934	1.1559219	236.54865	0	5.1783752						76	5	2	NaN	NaN	NaN	0.84876	1	2573	2573		0.39566	0	1	4977.4			19215	6930	10974	11320	15307	15307					-0.005023931535674819
PAAVAGTS	8	Unmodified	_PAAVAGTS_					0	0	0		ENST00000423520.5_1_2:110371437-110371494:-|nuORF	ENST00000423520.5_1_2:110371437-110371494:-|nuORF	ENST00000423520.5_1_2:110371437-110371494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3515308921001	1	673.351531	672.344254	0.75946	0.00051138	5.8917	0.0039672	6.6511	0.0044785	673.3552372554888	27.687	0.26547	27.677	27.605	27.87	-0.009552	1287	43	0.8449601	0.025819898	0.84344065	172.6862	0	5.2768707						215	12	3	NaN	NaN	NaN	0.84876	1	2574	2574		0.39566	0	1	26277			19216	6930	10974	11320	15308	15308					-0.005023931535674819
PAAWRASV	8	Unmodified	_PAAWRASV_					0	0	0		ENST00000517503.1_3_8:144103316-144103727:+|nuORF	ENST00000517503.1_3_8:144103316-144103727:+|nuORF	ENST00000517503.1_3_8:144103316-144103727:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4628126760001	1	857.462813	856.455536	1.0473	0.00089805	-6.4511	-0.0055316	-5.4037	-0.0046335	857.4568836892622	36.95	0.16816	36.952	36.904	37.072	0.0022507	525	49	1.3070582	0.02871406	1.3055388	265.97827	0	5.8431396						131	8	2	NaN	NaN	NaN	0.84455	1	5352	5352		2.7852	0	1	11549			19217	7376	10975	11321	15309	15309					0.02156666274379404
PAEITLTWQQD	11	Unmodified	_PAEITLTWQQD_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3222421364001	2	651.322242	1300.62993	0.90894	0.00059201	-0.41704	-0.00027163	0.4919	0.00032038	651.3220204592378	33.504	0.21706	33.504	33.431	33.648	0	1125	85	0.9442611	0.051333904	0.9442611	382.2194	0	20.779022						482	10	4	NaN	NaN	NaN	0.48069	1	18791	18791		19.164	3.3417	1	84184			19218	5898	10976	11322	15310	15310					-0.008358428816109154
PAELESVL	8	Unmodified	_PAELESVL_					0	0	0		PMAIP1|p.V23Sfs*13|1|0.24|ENSG00000141682|chr18:59902654-59902657|AGTC/-|frameshift_variant	PMAIP1|p.V23Sfs*13|1|0.24|ENSG00000141682|chr18:59902654-59902657|AGTC/-|frameshift_variant	PMAIP1|p.V23Sfs*13|1|0.24|ENSG00000141682|chr18:59902654-59902657|AGTC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.461475272	1	857.461475	856.454199	2.3449	0.0020106	-0.12613	-0.00010815	2.2187	0.0019025	857.4610168829215	25.757	0.21712	25.757	25.684	25.901	0	420	70	1.3697531	0.04112935	1.3697531	278.73627	0	8.369537						295	10	2	NaN	NaN	NaN	0.35353	1	5491	5491		38.918	8.1267	1	42104			19219	8100	10977	11323	15311	15311					0.02022987394957454
PAEVSDEELF	10	Unmodified	_PAEVSDEELF_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;OBSCN-KRT17|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1135.5153613359998	1	1135.51536	1134.50808	2.004	0.0022755	-0.95497	-0.0010844	1.049	0.0011911	1135.5137761908754	24.55	0.14468	24.55	24.502	24.647	0	78	61	1.5723488	0.03533244	1.5723488	318.7215	0	7.162018						140	7	2	NaN	NaN	NaN	0.33935	1	14245	14245		26.115	8.316	1	12089			19220	3841	10978	11324	15312	15312					-0.053788849639886394
PAFSGAGK	8	Unmodified	_PAFSGAGK_					0	0	0		nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	734.3831653715001	1	734.383165	733.375889	1.1555	0.00084856	-8.8735	-0.0065165	-7.718	-0.0056679	734.375813990195	27.06	0.1207	27.06	27.012	27.133	0	555	67	1.2891023	0.039532423	1.2891023	263.0189	0	8.065887						153	6	2	NaN	NaN	NaN	0.84692	1	3804	3804		1.4396	0.19772	1	15071			19221	4910	10979	11325	15313	15313					-0.0014640039961477669
PAGAAAGLQP	10	Unmodified	_PAGAAAGLQP_					0	0	0		ENST00000424383.4_1_7:1784183-1785002:+|nuORF	ENST00000424383.4_1_7:1784183-1785002:+|nuORF	ENST00000424383.4_1_7:1784183-1785002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4573929471	1	852.457393	851.450116	1.3761	0.001173	-4.5375	-0.003868	-3.1614	-0.002695	852.4536493811105	32.249	0.072372	32.249	32.225	32.297	0	405	58	1.3786905	0.03394735	1.3786905	280.58102	0	6.9087524						94	4	2	NaN	NaN	NaN	0.75316	1	5407	5407		4.4131	0.3594	1	8788.1			19222	6933	10980	11326	15314	15314					0.01844942691889173
PAGAAKKP	8	Unmodified	_PAGAAKKP_					0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.4460999793	1	739.4461	738.438824	1.5867	0.0011733	-1.5905	-0.0011761	-0.0038446	-2.8429E-06	739.4444541457299	55.677	0.16851	55.677	55.604	55.773	0	564	61	1.2837118	0.03593862	1.2837118	261.88608	0	7.3316956						178	8	2	NaN	NaN	NaN	0.84876	1	3896	3896		0.39566	0	1	27400			19223	2426	10981	11327	15315	15315					0.059141653884125844
PAGAAKKP	8	Unmodified						0	0	0		ENSG00000124575|ENST00000244534|H1-3;ENSG00000168298|ENST00000304218|H1-4	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	739.4461	738.438824	0.36415	0.00026927	-2.1061	-0.0015574	-1.742	-0.0012881	739.4445288046417	55.602	0.048065	55.602	55.554	55.602	-0.00059128	567	55	1.2819146	0.03234136	1.2803952	261.51944		6.59787	-0.037403	-0.00031022	-0.0016583	NaN	0.39566	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3721.2			19224	2426	10981	11327							0.059141653884125844
PAGACGGV	8	Unmodified	_PAGACGGV_					0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.14704930594996	2	316.147049	630.279546	1.2045	0.00038079	-2.4482	-0.00077399	-1.2437	-0.0003932	316.14658539817	37.506	0.24079	37.506	37.434	37.675	0	1527	100	0.69677675	0.06136805	0.69677675	285.17245	0	25.116302						485	11	3	NaN	NaN	NaN	0.84651	1	1454	1454		1.6704	1.2747	1	78278			19225	944	10982	11328	15316	15316					-0.05038291231221592
PAGACGGV	8	Unmodified						0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	316.147049	630.279546	1.4879	0.00047038	-3.0702	-0.00097062	-1.5823	-0.00050024	316.1461678599342	37.504	0.1686	37.506	37.434	37.603	0.0028229	1524	100	0.698637	0.061354637	0.69711757	285.9338		25.11087	0.00015833	-0.00019059	0.0001704	NaN	1.6704	370	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63796			19226	944	10982	11328							-0.05038291231221592
PAGAHPFI	8	Unmodified	_PAGAHPFI_					0	0	0			REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.21886319084996	2	405.218863	808.423173	1.3038	0.00052833	-2.0823	-0.00084381	-0.77852	-0.00031547	405.2185529046701	53.852	0.12028	53.852	53.852	53.972	0	1404	85	0.77288127	0.051897705	0.77288127	314.84167	0	21.141113						135	6	3	NaN	NaN	NaN	0.84876	1	4871	4871		0.39566	0	1	15281	+		19227	11446	10983	11329	15317	15317					0.011298788713702379
PAGAHPFI	8	Unmodified						0	0	0			REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.218863	808.423173	1.3038	0.00052833	-2.0823	-0.00084381	-0.77852	-0.00031547	405.2185529046701	53.852	0.12028	53.852	53.852	53.972	0	1404	85	0.77288127	0.051897705	0.77288127	314.84167		21.141113	0.013227	7.1672E-05	-0.0010922	NaN	0.39566	135	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15281	+		19228	11446	10983	11329							0.011298788713702379
PAGAHPFI	8	Unmodified						0	0	0			REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.218863	808.423173	-0.56163	-0.00022758	-2.2846	-0.00092577	-2.8463	-0.0011534	405.2188965587187	53.826	0.1683	53.825	53.801	53.969	-0.00059128	1398	43	0.77658504	0.02592355	0.7750656	316.35043		10.560242	-0.013227	-9.2263E-05	0.0010922	NaN	0.39566	131	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15948	+		19229	11446	10983	11329							0.011298788713702379
PAGASGDG	8	Unmodified	_PAGASGDG_					0	0	0		ENST00000406875.7_1_7:139256241-139256364:-|nuORF	ENST00000406875.7_1_7:139256241-139256364:-|nuORF	ENST00000406875.7_1_7:139256241-139256364:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2681951932001	1	631.268195	630.260919	1.4707	0.00092843	7.5372	0.004758	9.0079	0.0056864	631.2732844558483	37.455	0.048027	37.458	37.41	37.458	0.0028229	1143	55	0.9332562	0.03303951	0.93173677	190.9852	0	6.7613373						63	3	2	NaN	NaN	NaN	0.84887	1	1375	1375		0.32989	0	1	4428.3			19230	6848	10984	11330	15318	15318					-0.06900129601422123
PAGASGDG	8	Unmodified						0	0	0		ENST00000406875.7_1_7:139256241-139256364:-|nuORF	ENST00000406875.7_1_7:139256241-139256364:-|nuORF	ENST00000406875.7_1_7:139256241-139256364:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	631.268195	630.260919	1.0756	0.00067902	9.5097	0.0060032	10.585	0.0066822	631.2736357382337	37.314	0.048058	37.314	37.29	37.338	0	1149	52	0.92958635	0.031209052	0.92958635	190.23418		6.3867493	-0.0723	0.00070586	-0.0010752	NaN	0.32989	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5616.1			19231	6848	10984	11330							-0.06900129601422123
PAGDEFSL	8	Unmodified	_PAGDEFSL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.383224951	1	835.383225	834.375948	1.6911	0.0014127	0.6831	0.00057065	2.3742	0.0019834	835.3837449868988	24.912	0.16893	24.912	24.84	25.009	0	492	43	1.3267875	0.025097966	1.3267875	270.1059	0	5.109436						122	8	2	NaN	NaN	NaN	0.65075	1	5189	5189		22.126	0	1	9274.1			19232	586	10985	11331	15319	15319					-0.04786445190291033
PAGDGQAAEV	10	Unmodified	_PAGDGQAAEV_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4214013712999	1	914.421401	913.414125	1.6394	0.0014991	-1.2297	-0.0011245	0.40969	0.00037463	914.4201633211826	14.045	0.16785	14.034	13.986	14.154	-0.010672	408	67	1.3769034	0.03932643	1.375384	279.9151	0	7.9947815						173	8	2	NaN	NaN	NaN	0.56921	1	6170	6170		16.584	1.4088	1	11682			19233	4588	10986	11332	15320	15320					-0.04604559275628617
PAGDPGPG	8	Unmodified	_PAGDPGPG_					0	0	0			REV__ENSG00000186897|ENST00000334221|C1QL4	REV__ENSG00000186897|ENST00000334221|C1QL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3045806995001	1	667.304581	666.297304	1.4876	0.00099266	6.0233	0.0040194	7.5108	0.005012	667.3086589336546	22.548	0.24124	22.535	22.487	22.728	-0.01354	705	52	1.1990347	0.030706644	1.1975152	245.09346	0	6.276718						192	11	2	NaN	NaN	NaN	0.84651	1	2391	2391		1.6704	0	1	17757	+		19234	11012	10987	11333	15321	15321					-0.049192527047011936
PAGDPGPG	8	Unmodified						0	0	0			REV__ENSG00000186897|ENST00000334221|C1QL4	REV__ENSG00000186897|ENST00000334221|C1QL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.304581	666.297304	1.7176	0.0011461	6.276	0.004188	7.9936	0.0053342	667.3085416271769	22.549	0.096512	22.549	22.549	22.645	0	705	73	1.1990347	0.04336679	1.1990347	245.09346		8.864563	0.007054	0.00013531	0.00075972	NaN	1.6704	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9951.6	+		19235	11012	10987	11333							-0.049192527047011936
PAGDPGPG	8	Unmodified						0	0	0			REV__ENSG00000186897|ENST00000334221|C1QL4	REV__ENSG00000186897|ENST00000334221|C1QL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.304581	666.297304	1.4876	0.00099266	6.0233	0.0040194	7.5108	0.005012	667.3086589336546	22.548	0.24124	22.535	22.487	22.728	-0.01354	705	52	1.1990347	0.030706644	1.1975152	245.09346		6.276718	-0.007054	-3.3371E-05	-0.00075972	NaN	1.6704	192	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17757	+		19236	11012	10987	11333							-0.049192527047011936
PAGGEPLL	8	Unmodified	_PAGGEPLL_					0	0	0		ENST00000393353.7_1_2:106002875-106002947:-|nuORF	ENST00000393353.7_1_2:106002875-106002947:-|nuORF	ENST00000393353.7_1_2:106002875-106002947:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4141311489001	1	753.414131	752.406855	1.2732	0.00095927	4.2689	0.0032162	5.5421	0.0041755	753.4177183217386	29.738	0.16889	29.731	29.683	29.852	-0.0070648	507	73	1.3178225	0.043052673	1.316303	268.75388	0	8.78009						223	8	3	NaN	NaN	NaN	0.81807	1	4029	4029		6.794	0	1	18700			19237	6765	10988	11334	15322	15322					0.020747529146206034
PAGGRTPI	8	Unmodified	_PAGGRTPI_					0	0	0			REV__ENST00000531239.2_1_11:67120490-67120989:-|nuORF	REV__ENST00000531239.2_1_11:67120490-67120989:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.4362635745	1	768.436264	767.428987	2.4746	0.0019016	-8.2017	-0.0063025	-5.7271	-0.0044009	768.4293441488744	24.26	0.21722	24.248	24.224	24.441	-0.012749	480	301	1.3339561	0.17979014	1.3324367	271.94885	0	36.653183						815	10	5	NaN	NaN	NaN	0.49126	1	4253	4253		31.561	6.6	1	1197700	+		19238	12649	10989	11335	15323	15323					0.03596977383040212
PAGHAQPK	8	Unmodified	_PAGHAQPK_					0	0	0			REV__ENSG00000148926|ENST00000278175|ADM	REV__ENSG00000148926|ENST00000278175|ADM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4315125476	1	805.431513	804.424236	-0.20164	-0.0001624	3.9521	0.0031831	3.7505	0.0030207	805.4351182043715	53.713	0.20194	53.712	53.647	53.849	-0.00059128	486	67	1.3303722	0.039418697	1.3288528	270.99896	0	8.029663						228	8	2	NaN	NaN	NaN	0.84876	1	4707	4707		0.39566	0	1	31497	+		19239	9986	10990	11336	15324	15324					0.014200932402786748
PAGHPWPDA	9	Unmodified	_PAGHPWPDA_					0	0	0			REV__ENSG00000111962|ENST00000367463|UST	REV__ENSG00000111962|ENST00000367463|UST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.22213416129995	2	474.222134	946.429715	0.42402	0.00020108	-1.6062	-0.0007617	-1.1822	-0.00056062	474.2221377013293	28.749	0.096504	28.74	28.74	28.837	-0.0083504	1374	88	0.791392	0.053643525	0.7898726	321.59766	0	21.799103						163	5	2	NaN	NaN	NaN	0.61413	1	6854	6854		4.9097	0.49665	1	14906	+		19240	9111	10991	11337	15325	15325					-0.04564227967921397
PAGKGYGG	8	Unmodified	_PAGKGYGG_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3518652431002	1	706.351865	705.344589	0.62002	0.00043795	9.0218	0.0063725	9.6418	0.0068105	706.3584347448848	33.985	0.21723	33.984	33.936	34.153	-0.0012474	768	67	1.1610622	0.039816737	1.1595428	237.06712	0	8.129837						244	10	3	NaN	NaN	NaN	0.84692	1	3253	3253		1.4396	1.0439	1	22968			19241	5501	10992	11338	15326	15326					-0.019869734337021328
PAGKGYGG	8	Unmodified						0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	706.351865	705.344589	0.54671	0.00038617	10.054	0.0071019	10.601	0.0074881	706.358845158224	33.986	0.2413	33.986	33.938	34.179	0	768	64	1.1610622	0.03800893	1.1610622	237.06712		7.7607117	0.001239	0.00033033	0.00075972	NaN	1.4396	220	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24055			19242	5501	10992	11338							-0.019869734337021328
PAGKLNQF	8	Unmodified	_PAGKLNQF_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF;nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.74270242790004	2	437.742702	873.470852	1.2884	0.00056401	-1.6178	-0.00070817	-0.32934	-0.00014417	437.7419754386988	15.412	0.23976	15.4	15.352	15.592	-0.012201	1401	46	0.77473325	0.027779698	0.7732138	315.20413	0	11.302307						174	11	2	NaN	NaN	NaN	0.49126	1	5580	5580		31.561	9.4347	1	22443			19243	495	10993	11339	15327	15327					0.029055330715777927
PAGLRDLK	8	Unmodified	_PAGLRDLK_					0	0	0		ENST00000361951.4_1_1:173793819-173794101:+|nuORF	ENST00000361951.4_1_1:173793819-173794101:+|nuORF	ENST00000361951.4_1_1:173793819-173794101:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.26380201074994	2	435.263802	868.513051	0.8822	0.00038399	-2.7285	-0.0011876	-1.8463	-0.00080361	435.2627960800723	14.644	0.11975	14.633	14.585	14.704	-0.011219	1479	43	0.72651637	0.025999546	0.7249969	295.61295	0	10.57901						133	6	2	NaN	NaN	NaN	0.79607	1	5510	5510		9.746	1.4557	1	14834			19244	6612	10994	11340	15328	15328					0.0735350847993459
PAGNEGPL	8	Unmodified	_PAGNEGPL_					0	0	0			REV__nc|ENSG00000168542|P02461-2|COL3A1	REV__nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3729946157001	1	754.372995	753.365718	1.6493	0.0012442	-0.24587	-0.00018548	1.4034	0.0010587	754.3731354410174	55.22	0.14441	55.22	55.148	55.292	0	552	70	1.2908988	0.041305184	1.2908988	263.25714	0	8.423492						194	7	3	NaN	NaN	NaN	0.84756	1	4119	4119		1.072	0	1	11856	+		19245	10518	10995	11341	15329	15329					-0.02083008124850494
PAGPAFAL	8	Unmodified	_PAGPAFAL_					0	0	0			REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.20796415355	2	372.207964	742.401375	2.2216	0.00082689	-10.566	-0.0039329	-8.3448	-0.003106	372.20403022257943	54.884	0.024006	54.884	54.884	54.908	0	1449	22	0.74507743	0.01298213	0.74507743	303.96487	0	5.2962646						26	2	2	NaN	NaN	NaN	0.84651	1	3953	3953		1.6704	1.2747	1	1398.2	+		19246	12393	10996	11342	15330	15330					0.019870741228032784
PAGPLEED	8	Unmodified	_PAGPLEED_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.3781395731	1	827.37814	826.370863	1.2492	0.0010335	-5.8565	-0.0048455	-4.6073	-0.003812	827.3732262159091	32.055	0.12065	32.051	32.051	32.172	-0.0037613	498	37	1.3232021	0.021514893	1.3216827	269.41827	0	4.3806763						67	6	2	NaN	NaN	NaN	0.8439	1	4982	4982		3.1533	0.36816	1	4211.8			19247	2470	10997	11343	15331	15331					-0.04926749052901869
PAGPLEED	8	Unmodified						0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598364.1_1_19:46318820-46320367:-|nuORF;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	827.37814	826.370863	1.4176	0.0011729	-7.9922	-0.0066126	-6.5746	-0.0054397	827.3716997350435	31.959	0.12068	31.959	31.935	32.056	0	498	46	1.3232021	0.026897907	1.3232021	269.41827		5.476715	-0.04584	-0.00044324	0.00075972	NaN	3.1533	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5954.6			19248	2470	10997	11343							-0.04926749052901869
PAGRPGGG	8	Unmodified	_PAGRPGGG_					0	0	0			REV__SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	REV__SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3474485672002	1	668.347449	667.340172	1.9077	0.001275	2.0353	0.0013603	3.943	0.0026353	668.3482202522864	36.324	0.09626	36.325	36.301	36.397	0.0011024	738	52	1.179155	0.030746102	1.1776356	241.02234	0	6.2845764						86	5	2	NaN	NaN	NaN	0.84887	1	2441	2441		0.32989	0	1	6617.3	+		19249	13341	10998	11344	15332	15332					-0.006804378566130254
PAHGAAAV	8	Unmodified	_PAHGAAAV_					0	0	0			REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF	REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3678496583	1	693.36785	692.360573	1.6955	0.0011756	-9.2752	-0.0064311	-7.5797	-0.0052555	693.3606001966137	23.586	0.14451	23.586	23.538	23.682	0	720	82	1.1900014	0.048811197	1.1900014	243.06279	0	9.969879						170	7	2	NaN	NaN	NaN	0.84651	1	3087	3087		1.6704	0	1	11657	+		19250	12792	10999	11345	15333	15333					0.0020873280317346143
PAHGAAAV	8	Unmodified						0	0	0			REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF	REV__ENST00000563067.5_1_16:2258286-2258875:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.36785	692.360573	1.6955	0.0011756	-9.2752	-0.0064311	-7.5797	-0.0052555	693.3606001966137	23.586	0.14451	23.586	23.538	23.682	0	720	82	1.1900014	0.048811197	1.1900014	243.06279		9.969879	0	0	0	NaN	1.6704	170	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11657	+		19251	12792	10999	11345							0.0020873280317346143
PAHKISLELDK	11	Unmodified	_PAHKISLELDK_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.5749553676666	3	417.574955	1249.70304	1.4878	0.00062128	0.56228	0.00023479	2.0501	0.00085607	417.575337106247	19.635	0.072256	19.621	19.597	19.669	-0.014141	1425	28	0.7599118	0.016682267	0.75839233	461.5908	0	10.133301						60	4	2	NaN	NaN	NaN	0.5615	1	17021	17021		16.273	2.324	1	6340.2			19252	5356	11000	11346	15334	15334					0.08817330631632103
PAKGARPA	8	Unmodified	_PAKGARPA_					0	0	0			REV__ENST00000380171.7_2_2:27434968-27435169:+|nuORF	REV__ENST00000380171.7_2_2:27434968-27435169:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4522479897	1	767.452248	766.444972	-0.10216	-7.8403E-05	5.4595	0.0041899	5.3573	0.0041115	767.4562561166836	58.866	0.047977	58.866	58.842	58.89	-0.00045395	480	58	1.3339561	0.03404522	1.3324367	271.9549	0	6.9408264						90	3	3	NaN	NaN	NaN	0.84887	1	4238	4238		0.32989	0	1	9585.4	+		19253	11963	11001	11347	15335	15335					0.05240683619933861
PAKHNGIFF	9	Unmodified	_PAKHNGIFF_					0	0	0			REV__ENST00000278071.6_1_10:106072956-106073238:-|nuORF	REV__ENST00000278071.6_1_10:106072956-106073238:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7770765615	2	515.777077	1029.5396	1.0407	0.00053678	6.2897	0.0032441	7.3304	0.0037809	515.7802424206972	29.545	0.0965	29.538	29.514	29.61	-0.0070648	1272	55	0.854179	0.033189833	0.8526596	346.71094	0	13.471741						137	5	2	NaN	NaN	NaN	0.53206	1	9563	9563		8.2903	0.045466	1	10662	+		19254	11601	11002	11348	15336	15336					0.026011973712684267
PAKPGGAG	8	Unmodified	_PAKPGGAG_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;ENST00000494985.5_1_13:113863983-113873323:+|nuORF;ENST00000474116.5_1_13:113863941-113874010:+|nuORF	ENSG00000139842|ENST00000375440|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.356950621	1	654.356951	653.349674	0.14531	9.5082E-05	-9.9917	-0.0065381	-9.8464	-0.006443	654.3506143410149	31.813	0.19308	31.809	31.761	31.954	-0.0044155	675	58	1.2170867	0.034282446	1.2155672	248.88269	0	7.010437						231	9	3	NaN	NaN	NaN	0.84651	1	2065	2065		1.6704	0	1	29135			19255	3240	11003	11349	15337	15337					0.00913330428898007
PAKVGCGG	8	Unmodified	_PAKVGCGG_					0	0	0		ENST00000399506.6_2_17:7120511-7120586:-|nuORF	ENST00000399506.6_2_17:7120511-7120586:-|nuORF	ENST00000399506.6_2_17:7120511-7120586:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3446713752002	1	688.344671	687.337395	1.4704	0.0010121	-0.47864	-0.00032947	0.99174	0.00068266	688.3415412196873	32.249	0.19304	32.249	32.201	32.394	0	732	97	1.1827712	0.057878137	1.1827712	241.6202	0	11.823517						197	9	3	NaN	NaN	NaN	0.84727	1	2977	2977		1.2418	0	1	19872			19256	6823	11004	11350	15338	15338					-0.018780293057830022
PALEGPGGG	9	Unmodified	_PALEGPGGG_					0	0	0			REV__ENSG00000176165|ENST00000313071|FOXG1	REV__ENSG00000176165|ENST00000313071|FOXG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3729946157002	1	754.372995	753.365718	1.7085	0.0012889	3.4319	0.0025889	5.1404	0.0038778	754.3755904049625	19.226	0.12019	19.212	19.092	19.212	-0.014141	633	52	1.2423272	0.030624509	1.2408078	253.35176	0	6.2453613						144	6	2	NaN	NaN	NaN	0.65818	1	4043	4043		2.7852	0	1	24828	+		19257	10745	11005	11351	15339	15339					-0.020830081248391252
PALEGPGGG	9	Unmodified						0	0	0			REV__ENSG00000176165|ENST00000313071|FOXG1	REV__ENSG00000176165|ENST00000313071|FOXG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	754.372995	753.365718	1.7085	0.0012889	3.4319	0.0025889	5.1404	0.0038778	754.3755904049625	19.226	0.12019	19.212	19.092	19.212	-0.014141	633	52	1.2423272	0.030624509	1.2408078	253.35176		6.2453613	-0.0080777	-0.00035197	-0.00075972	NaN	2.7852	144	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24828	+		19258	10745	11005	11351							-0.020830081248391252
PALEPCNSL	9	Unmodified	_PALEPCNSL_					0	0	0			REV__ENST00000371222.3_1_1:59249320-59249608:-|nuORF	REV__ENST00000371222.3_1_1:59249320-59249608:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4553440366	1	943.455344	942.448068	2.1716	0.0020488	-6.2041	-0.0058533	-4.0325	-0.0038045	943.4477016937004	25.853	0.048241	25.853	25.853	25.901	0	327	31	1.425088	0.017820597	1.425088	289.5782	0	3.6211243						46	3	2	NaN	NaN	NaN	0.58159	1	6866	6866		6.2502	0.15988	1	3013.4	+		19259	11896	11006	11352	15340	15340					-0.025458541082230113
PANDNIDEIL	10	Unmodified	_PANDNIDEIL_					0	0	0			REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.27476062755	2	557.274761	1112.53497	0.77666	0.00043281	-6.5997	-0.0036778	-5.823	-0.003245	557.2708975594825	31.501	0.28965	31.501	31.428	31.718	0	1218	85	0.8873258	0.05153382	0.8873258	359.81055	0	20.896942						336	13	3	NaN	NaN	NaN	0.66626	1	13371	13371		10.36	0.61416	1	56953	+		19260	8772	11007	11353	15341	15341					-0.016797763528074938
PANDNIDEIL	10	Unmodified						0	0	0			REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.274761	1112.53497	0.77666	0.00043281	-6.5997	-0.0036778	-5.823	-0.003245	557.2708975594825	31.501	0.28965	31.501	31.428	31.718	0	1218	85	0.8873258	0.05153382	0.8873258	359.81055		20.896942	0.014802	0.0019772	0.00075972	NaN	10.36	336	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56953	+		19261	8772	11007	11353							-0.016797763528074938
PANDNIDEIL	10	Unmodified						0	0	0			REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	REV__PCDH11Y|p.R390Dfs*26|1|0.46|ENSG00000099715|chrY:5098745-5098745|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.274761	1112.53497	0.71674	0.00039942	-9.0947	-0.0050682	-8.3779	-0.0046688	557.2693756273455	31.476	0.24137	31.471	31.423	31.664	-0.0044155	1218	58	0.8873258	0.034952402	0.8858064	359.81055		14.173187	-0.014802	-0.0008036	-0.00075972	NaN	10.36	205	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44676	+		19262	8772	11007	11353							-0.016797763528074938
PANGHAGG	8	Unmodified	_PANGHAGG_					0	0	0			REV__ENST00000413580.5_1_17:47302457-47304104:-|nuORF	REV__ENST00000413580.5_1_17:47302457-47304104:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3110630609001	1	680.311063	679.303787	3.3521	0.0022805	5.059	0.0034417	8.4112	0.0057222	680.3130404833352	19.635	0.048172	19.621	19.597	19.645	-0.014141	1104	22	0.9570911	0.012827218	0.95557165	195.56267	0	2.6210022						23	3	2	NaN	NaN	NaN	0.84887	1	2744	2744		0.32989	0	1	1241.1	+		19263	12075	11008	11354	15342	15342					-0.04869314753329945
PAPAGCGV	8	Unmodified	_PAPAGCGV_					0	0	0			REV__ENST00000580346.5_1_17:56316099-56327997:+|nuORF	REV__ENST00000580346.5_1_17:56316099-56327997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.3238	0.00044503	6.1022	0.0020513	7.426	0.0024964	336.16545314168064	40.559	0.096165	40.565	40.493	40.589	0.0067558	1521	64	0.70049703	0.03906083	0.6989776	286.3327	0	15.96637						126	5	2	NaN	NaN	NaN	0.84651	1	2520	2520		1.6704	0	1	16669	+		19264	10463	11009	11355	15343	15343					-0.03749718197116181
PAPALHLA	8	Unmodified	_PAPALHLA_					0	0	0			REV__ENST00000271469.7_2_1:162531391-162531544:+|nuORF	REV__ENST00000271469.7_2_1:162531391-162531544:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4617500435002	1	789.46175	788.454474	1.9527	0.0015416	5.3897	0.004255	7.3424	0.0057965	789.4670031130404	53.828	0.25011	53.828	53.626	53.876	0	387	46	1.389409	0.026786327	1.389409	283.12106	0	5.4582825						270	10	4	NaN	NaN	NaN	0.84651	1	4609	4609		1.6704	0	1	33177	+		19265	11586	11010	11356	15344	15344					0.05178451905476322
PAPALHLA	8	Unmodified						0	0	0			REV__ENST00000271469.7_2_1:162531391-162531544:+|nuORF	REV__ENST00000271469.7_2_1:162531391-162531544:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.46175	788.454474	1.9527	0.0015416	5.3897	0.004255	7.3424	0.0057965	789.4670031130404	53.828	0.25011	53.828	53.626	53.876	0	387	46	1.389409	0.026786327	1.389409	283.12106		5.4582825	-0.010872	-0.00078279	-0.00013316	NaN	1.6704	270	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33177	+		19266	11586	11010	11356							0.05178451905476322
PAPAPPGA	8	Unmodified	_PAPAPPGA_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479001	1	677.361702	676.354425	1.064	0.00072069	6.1109	0.0041393	7.1749	0.00486	677.3650399646164	24.55	0.12067	24.538	24.489	24.61	-0.012394	786	100	1.1501974	0.059728384	1.148678	235.04036	0	12.205368						193	6	2	NaN	NaN	NaN	0.84651	1	2677	2677		1.6704	0	1	13167	+		19267	8770	11011	11357	15345	15345					0.003302145716702398
PAPAQSPV	8	Unmodified	_PAPAQSPV_					0	0	0			REV__ENSG00000185670|ENST00000394807|ZBTB3	REV__ENSG00000185670|ENST00000394807|ZBTB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.4093801220001	1	766.40938	765.402104	2.3997	0.0018391	-10.333	-0.0079197	-7.9338	-0.0060806	766.4003977804558	33.985	0.048271	33.984	33.984	34.032	-0.0012474	969	31	1.0393391	0.01823318	1.0378196	211.8962	0	3.7172852						34	3	2	NaN	NaN	NaN	0.84651	1	4217	4217		1.6704	0	1	2003.6	+		19268	10970	11012	11358	15346	15346					0.010018687718570618
PAPGMGAA	8	Unmodified	_PAPGMGAA_					0	0	0		ENST00000587213.5_1_19:56159538-56160159:+|nuORF;ENST00000308964.7_1_19:56159415-56160373:+|nuORF;ENST00000593069.1_2_19:56159415-56160398:+|nuORF;ENST00000586790.5_1_19:56159538-56160159:+|nuORF	ENST00000587213.5_1_19:56159538-56160159:+|nuORF	ENST00000587213.5_1_19:56159538-56160159:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16269937015	2	336.162699	670.310846	0.99786	0.00033544	8.5419	0.0028715	9.5398	0.0032069	336.1657913727287	40.633	0.024033	40.633	40.633	40.657	0	1521	67	0.70049703	0.04092306	0.70049703	286.33267	0	16.7276						72	2	2	NaN	NaN	NaN	0.84651	1	2603	2603		1.6704	0	1	12325			19269	6438	11013	11359	15347	15347					-0.037497181971275495
PAPGMGAA	8	Unmodified						0	0	0		ENST00000587213.5_1_19:56159538-56160159:+|nuORF;ENST00000308964.7_1_19:56159415-56160373:+|nuORF;ENST00000593069.1_2_19:56159415-56160398:+|nuORF;ENST00000586790.5_1_19:56159538-56160159:+|nuORF	ENST00000587213.5_1_19:56159538-56160159:+|nuORF	ENST00000587213.5_1_19:56159538-56160159:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	336.162699	670.310846	1.3238	0.00044503	6.1022	0.0020513	7.426	0.0024964	336.16545314168064	40.559	0.096165	40.565	40.493	40.589	0.0067558	1521	64	0.70049703	0.03906083	0.6989776	286.3327		15.96637	-0.033656	-0.0010299	-0.00075972	NaN	1.6704	126	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16669			19270	6438	11013	11359							-0.037497181971275495
PAPHFSGG	8	Unmodified	_PAPHFSGG_					0	0	0		ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3627642804001	1	769.362764	768.355488	0.65914	0.00050712	-1.6832	-0.001295	-1.0241	-0.0007879	769.3614357174133	55.771	0.024082	55.77	55.77	55.794	-0.00059128	624	40	1.247731	0.023413777	1.2462115	254.36502	0	4.773178						38	2	2	NaN	NaN	NaN	0.84651	1	4258	4258		1.6704	0.42852	1	2811.3			19271	6834	11014	11360	15348	15348					-0.03795571059424674
PAPHFSGG	8	Unmodified						0	0	0		ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.362764	768.355488	2.1616	0.001663	-2.8018	-0.0021556	-0.64017	-0.00049252	769.3604205764032	55.773	0.02409	55.773	55.749	55.773	0	627	34	1.24593	0.019809484	1.24593	253.99786		4.0384064	0.0014066	-0.00062504	-0.00014081	NaN	1.6704	27	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1878.5			19272	6834	11014	11360							-0.03795571059424674
PAPILTGVR	9	Unmodified	_PAPILTGVR_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475002	1	923.567278	922.560001	1.8431	0.0017022	-1.6615	-0.0015345	0.1816	0.00016772	923.5658705799177	52.763	0.071941	52.763	52.739	52.811	0	243	49	1.4749115	0.028425217	1.4749115	299.79535	0	5.7778015						127	4	3	NaN	NaN	NaN	0.66529	1	6458	6458		2.1763	0.73677	1	15924	+		19273	13606	11015	11361	15349	15349					0.09562368031095048
PAPILTGVR	9	Unmodified	_PAPILTGVR_					0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5672777475002	1	923.567278	922.560001	-0.51605	-0.00047661	-0.41821	-0.00038625	-0.93426	-0.00086285	923.5669163727132	56.275	0.047966	56.274	56.25	56.298	-0.00056458	297	46	1.4428991	0.026698232	1.4413797	293.2884	0	5.426758						78	3	3	NaN	NaN	NaN	0.66529	1	6333	6333		2.1763	0.50597	1	8221.3	+		19274	13606	11015	11361	15350	15350					0.09562368031095048
PAPILTGVR	9	Unmodified						0	0	0			REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	REV__tr|U7T4W4|U7T4W4_FUSNUProteintranslocasesubunitSecYOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secYPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.567278	922.560001	1.8431	0.0017022	-1.6615	-0.0015345	0.1816	0.00016772	923.5658705799177	52.763	0.071941	52.763	52.739	52.811	0	243	49	1.4749115	0.028425217	1.4749115	299.79535		5.7778015	0.00097823	-0.00051826	-0.0010169	NaN	2.1763	127	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15924	+		19275	13606	11015	11361							0.09562368031095048
PAPKGRGA	8	Unmodified	_PAPKGRGA_					0	0	0		ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.22193719604996	2	377.221937	752.429321	1.5788	0.00059558	-2.3359	-0.00088115	-0.75704	-0.00028557	377.221236005177	11.98	0.144	11.98	11.932	12.076	0	1440	49	0.7506418	0.029675126	0.7506418	306.16107	0	12.103485						118	7	2	NaN	NaN	NaN	0.84692	1	4109	4109		1.4396	0	1	11911			19276	2622	11016	11362	15351	15351					0.04320397102890183
PAPKGRGA	8	Unmodified						0	0	0		ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	377.221937	752.429321	1.3691	0.00051647	-1.1327	-0.00042729	0.2364	8.9176E-05	377.2217693479282	12.03	0.21589	12.022	11.902	12.118	-0.0081863	1437	55	0.7524962	0.03338456	0.75097674	306.91742		13.616425	0.020893	0.00055957	0.00016748	NaN	1.4396	164	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14326			19277	2622	11016	11362							0.04320397102890183
PAPLAAAI	8	Unmodified	_PAPLAAAI_					0	0	0		ENSG00000261787|ENST00000563496|TCF24	ENSG00000261787|ENST00000563496|TCF24	ENSG00000261787|ENST00000563496|TCF24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4399519688999	1	723.439952	722.432676	1.5206	0.0011001	-2.5233	-0.0018255	-1.0027	-0.00072539	723.4383451166221	29.232	0.38614	29.232	29.16	29.546	0	648	154	1.2333171	0.0920707	1.2333171	251.70679	0	18.790634						534	17	5	NaN	NaN	NaN	0.84876	1	3653	3653		0.39566	0	1	249660			19278	6150	11017	11363	15352	15352					0.060356471568866255
PAPLKGGK	8	Unmodified	_PAPLKGGK_					0	0	0		ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4774001077002	1	767.4774	766.470124	1.8047	0.0013851	-1.0449	-0.00080194	0.75981	0.00058314	767.4766672153315	57.189	0.21625	57.189	57.165	57.381	0	492	76	1.3267875	0.044805884	1.3267875	270.49332	0	9.134644						187	10	2	NaN	NaN	NaN	0.84945	1	4315	4315		0	0	1	34915			19279	7600	11018	11364	15353	15353					0.07754738422522678
PAPLKGGK	8	Unmodified	_PAPLKGGK_					0	0	0		ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4774001077002	1	767.4774	766.470124	1.8471	0.0014176	0.21965	0.00016858	2.0667	0.0015862	767.4770327640751	56.828	0.19207	56.828	56.732	56.924	0	501	115	1.3214091	0.06808698	1.3214091	269.39682	0	13.880951						409	9	3	NaN	NaN	NaN	0.84945	1	4316	4316		0	0	1	47724			19280	7600	11018	11364	15354	15354					0.07754738422522678
PAPLKGGK	8	Unmodified	_PAPLKGGK_					0	0	0		ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	ENST00000561918.1_1_16:57512562-57513515:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4774001077002	1	767.4774	766.470124	-0.20403	-0.00015659	0.93065	0.00071425	0.72662	0.00055766	767.4769769664833	56.827	0.21605	56.826	56.754	56.97	-0.00056458	498	85	1.3232021	0.05019605	1.3216827	269.76236	0	10.2335205						368	10	3	NaN	NaN	NaN	0.84887	1	4243	4243		0.32989	0	1	39570			19281	7600	11018	11364	15355	15355					0.07754738422522678
PAPSSGNG	8	Unmodified	_PAPSSGNG_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3103943589001	1	686.310394	685.303118	1.6471	0.0011304	8.1725	0.0056089	9.8196	0.0067393	686.3144540268416	32.297	0.072372	32.297	32.225	32.297	0	708	46	1.1972283	0.027099848	1.1972283	244.58768	0	5.5363617						64	4	2	NaN	NaN	NaN	0.84876	1	2946	2946		0.39566	0	1	4446.5			19282	2660	11019	11365	15356	15356					-0.052121541930318926
PAPYAVDVA	9	Unmodified	_PAPYAVDVA_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.7345430448	2	451.734543	901.454533	1.4871	0.00067176	-4.7821	-0.0021603	-3.2951	-0.0014885	451.73339951048706	55.22	0.024082	55.22	55.196	55.22	0	1410	28	0.76917666	0.016673267	0.76917666	312.79315	0	6.780365						31	2	2	NaN	NaN	NaN	0.67818	1	6102	6102		1.072	0.67635	1	2091.2			19283	4387	11020	11366	15357	15357					-0.0001359288519324764
PAQQPEPLHR	10	Unmodified	_PAQQPEPLHR_					0	0	0			REV__ENST00000592685.5_1_19:10572289-10572593:+|nuORF	REV__ENST00000592685.5_1_19:10572289-10572593:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.8121789766	2	586.812179	1171.60981	1.6606	0.00097446	-6.8621	-0.0040268	-5.2015	-0.0030523	586.8085827482506	45.862	0.14388	45.862	45.79	45.934	0	1293	31	0.84127116	0.018446803	0.84127116	340.92484	0	7.475525						114	7	3	NaN	NaN	NaN	0.74182	1	15545	15545		5.1889	0.87873	1	8555	+		19284	12931	11021	11367	15358	15358					0.030864509690673003
PAQTVLVP	8	Unmodified	_PAQTVLVP_					0	0	0		nc|ENSG00000135451|Q12815-2|TROAP;chr12:49324037-49324155|514|13.55|0.5|4.76|+|ENST00000380327|TROAP,TROAP	nc|ENSG00000135451|Q12815-2|TROAP	nc|ENSG00000135451|Q12815-2|TROAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.74745345479994	2	412.747453	823.480354	0.88184	0.00036398	-4.5009	-0.0018577	-3.619	-0.0014937	412.7455697422439	29.569	0.12061	29.562	29.514	29.635	-0.0070667	1278	79	0.85049206	0.04791498	0.8489726	346.3517	0	19.512726						231	6	3	NaN	NaN	NaN	0.84876	1	4952	4952		0.39566	0	1	37463			19285	124	11022	11368	15359	15359					0.06155301357080134
PAQTVLVP	8	Unmodified						0	0	0		nc|ENSG00000135451|Q12815-2|TROAP;chr12:49324037-49324155|514|13.55|0.5|4.76|+|ENST00000380327|TROAP,TROAP	nc|ENSG00000135451|Q12815-2|TROAP	nc|ENSG00000135451|Q12815-2|TROAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	412.747453	823.480354	1.4198	0.000586	-5.0457	-0.0020826	-3.626	-0.0014966	412.74520949669846	29.57	0.14477	29.57	29.522	29.667	0	1278	88	0.85049206	0.053458035	0.85049206	346.3517		21.770111	0.0039531	-0.00022577	0.00075972	NaN	0.39566	272	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51141			19286	124	11022	11368							0.06155301357080134
PASDPAPLL	9	Unmodified	_PASDPAPLL_					0	0	0			REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.4774596871999	1	880.47746	879.470183	1.7477	0.0015388	-0.62596	-0.00055114	1.1217	0.00098764	880.4767142830091	24.912	0.1448	24.912	24.864	25.009	0	390	85	1.3876231	0.05003047	1.3876231	282.25592	0	10.176697						319	7	3	NaN	NaN	NaN	0.0081087	1	5793	5793		96.245	9.2247	1	47922	+		19287	12843	11023	11369	15360	15360					0.025626936318417393
PASDPAPLL	9	Unmodified	_PASDPAPLL_					0	0	0			REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4774596871999	1	880.47746	879.470183	1.3984	0.0012313	0.1933	0.0001702	1.5917	0.0014015	880.4775617320118	24.912	0.1448	24.9	24.851	24.996	-0.012392	387	85	1.389409	0.050025225	1.3878895	282.61917	0	10.175598						327	7	3	NaN	NaN	NaN	0.014046	1	5671	5671		80.639	3.8994	1	44985	+		19288	12843	11023	11369	15361	15361					0.025626936318417393
PASDPAPLL	9	Unmodified						0	0	0			REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.47746	879.470183	1.7477	0.0015388	-0.62596	-0.00055114	1.1217	0.00098764	880.4767142830091	24.912	0.1448	24.912	24.864	25.009	0	390	85	1.3876231	0.05003047	1.3876231	282.25592		10.176697	0.0062901	-0.00027542	-0.00013325	NaN	96.245	319	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47922	+		19289	12843	11023	11369							0.025626936318417393
PASDPAPLL	9	Unmodified						0	0	0			REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	880.47746	879.470183	1.3984	0.0012313	0.1933	0.0001702	1.5917	0.0014015	880.4775617320118	24.912	0.1448	24.9	24.851	24.996	-0.012392	387	85	1.389409	0.050025225	1.3878895	282.61917		10.175598	-0.0062901	0.00044592	0.00013325	NaN	96.245	327	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44985	+		19290	12843	11023	11369							0.025626936318417393
PASFVVFLV	9	Unmodified	_PASFVVFLV_					0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5658807640002	1	978.565881	977.558604	1.0075	0.00098588	0.89765	0.00087841	1.9051	0.0018643	978.5669203477344	35.072	0.072388	35.072	35.048	35.12	0	180	82	1.5121819	0.047893763	1.5121819	307.11664	0	9.72699						155	4	3	NaN	NaN	NaN	0.36492	1	7829	7829		15.175	0.16249	1	11017			19291	1631	11024	11370	15362	15362					0.06892733942333962
PASFVVFLV	9	Unmodified						0	0	0		ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000487109.5_1_9:139906084-139911410:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	978.565881	977.558604	1.5169	0.0014843	0.12765	0.00012492	1.6445	0.0016093	978.5654904125652	35.07	0.096516	35.07	35.022	35.119	-4.5776E-05	180	82	1.5121819	0.04788363	1.5106624	307.11667		9.724945	-0.00074079	-0.00042265	-0.00075972	NaN	15.175	147	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11141			19292	1631	11024	11370							0.06892733942333962
PASGQIALL	9	Unmodified	_PASGQIALL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	869.5090941666	1	869.509094	868.501818	1.5601	0.0013565	-0.098967	-8.6053E-05	1.4612	0.0012705	869.5090879658013	24.14	0.19312	24.14	24.092	24.285	0	396	91	1.3840506	0.053598404	1.3840506	281.58398	0	10.904541						387	9	3	NaN	NaN	NaN	0.030669	1	5648	5648		58.235	0.035861	1	60436			19293	5130	11025	11371	15363	15363					0.062306863857997996
PASISVLII	9	Unmodified	_PASISVLII_					0	0	0		ENSG00000043093|ENST00000292782|DCUN1D1;ENST00000406773.1_1_6:100978428-100978584:+|nuORF	ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5764454503002	1	912.576445	911.569169	1.3216	0.001206	-1.2462	-0.0011373	0.075325	6.874E-05	912.5746946692489	35.167	0.096584	35.167	35.143	35.239	-4.5776E-05	309	52	1.435777	0.030274034	1.4342575	291.89246	0	6.1546936						135	5	3	NaN	NaN	NaN	0.030391	1	6146	6146		58.599	14.297	1	11768			19294	537	11026	11372	15364	15364					0.10984716596760791
PATPVSVPL	9	Unmodified	_PATPVSVPL_					0	0	0			REV__ROCK1-DCC|1|fusion	REV__ROCK1-DCC|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.5138451935001	1	880.513845	879.506569	1.5351	0.0013517	0.25491	0.00022446	1.7901	0.0015762	880.5140255607579	24.213	0.14481	24.213	24.164	24.309	0	354	115	1.4090419	0.06781912	1.4090419	286.61252	0	13.795044						323	7	3	NaN	NaN	NaN	0.018156	1	5795	5795		74.332	15.733	1	47382	+		19295	13306	11027	11373	15365	15365					0.06199570528565346
PATPVSVPL	9	Unmodified	_PATPVSVPL_					0	0	0			REV__ROCK1-DCC|1|fusion	REV__ROCK1-DCC|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.5138451935001	1	880.513845	879.506569	1.3879	0.0012221	0.15537	0.0001368	1.5433	0.0013589	880.5138253996096	24.236	0.12068	24.224	24.175	24.296	-0.012747	357	106	1.407258	0.062455058	1.4057386	286.24966	0	12.703949						280	6	3	NaN	NaN	NaN	0.032764	1	5674	5674		55.494	2.7354	1	41855	+		19296	13306	11027	11373	15366	15366					0.06199570528565346
PATPVSVPL	9	Unmodified						0	0	0			REV__ROCK1-DCC|1|fusion	REV__ROCK1-DCC|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.513845	879.506569	1.5351	0.0013517	0.25491	0.00022446	1.7901	0.0015762	880.5140255607579	24.213	0.14481	24.213	24.164	24.309	0	354	115	1.4090419	0.06781912	1.4090419	286.61252		13.795044	-0.0055431	4.6658E-05	0.0016516	NaN	74.332	323	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47382	+		19297	13306	11027	11373							0.06199570528565346
PATPVSVPL	9	Unmodified						0	0	0			REV__ROCK1-DCC|1|fusion	REV__ROCK1-DCC|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	880.513845	879.506569	1.3879	0.0012221	0.15537	0.0001368	1.5433	0.0013589	880.5138253996096	24.236	0.12068	24.224	24.175	24.296	-0.012747	357	106	1.407258	0.062455058	1.4057386	286.24966		12.703949	0.0055431	-4.0995E-05	-0.0016516	NaN	74.332	280	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41855	+		19298	13306	11027	11373							0.06199570528565346
PAVKLQLL	8	Unmodified	_PAVKLQLL_					0	0	0		ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF;ENSG00000205758|ENST00000381554|CRYZL1	ENST00000452420.5_1_21:34968037-34971579:-|nuORF	ENST00000452420.5_1_21:34968037-34971579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.5818651792002	1	881.581865	880.574589	-0.39692	-0.00034992	3.676	0.0032407	3.2791	0.0028908	881.5849560670699	59.058	0.14403	59.058	58.986	59.13	-0.00045776	303	61	1.4393384	0.035610795	1.437819	292.76965	0	7.2434387						184	7	2	NaN	NaN	NaN	0.84692	1	5691	5691		1.4396	0	1	25182			19299	5933	11028	11374	15367	15367					0.1295244017924233
PAWPLSGSER	10	Unmodified	_PAWPLSGSER_					0	0	0			REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.28018035645	2	550.28018	1098.54581	0.39207	0.00021575	-6.0747	-0.0033428	-5.6827	-0.0031271	550.2759025987144	38.324	0.12014	38.324	38.275	38.396	0	1230	61	0.8799654	0.036821842	0.8799654	356.8815	0	14.933563						128	6	4	NaN	NaN	NaN	0.5626	1	12782	12782		16.858	1.6829	1	11165	+		19300	12381	11029	11375	15368	15368					0.0004767081213685742
PAYFGQEHARV	11	Unmodified	_PAYFGQEHARV_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F1728Sfs*3|1|0.06|ENSG00000104093|chr15:51487988-51487988|A/-|frameshift_variant	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.5473997020333	3	425.5474	1273.62037	2.0311	0.00086434	0.72937	0.00031038	2.7605	0.0011747	425.54773035657604	16.994	0.071915	16.981	16.933	17.005	-0.013294	1407	28	0.77102906	0.016669631	0.7695096	468.24777	0	10.123505						46	4	2	NaN	NaN	NaN	0.77883	1	17485	17485		0.10152	0	1	3408.3			19301	1462	11030	11376	15369	15369					-0.005495663765032077
PCCAPAPC	8	Unmodified	_PCCAPAPC_					0	0	0		ENSG00000189169|ENST00000400365|KRTAP10-12;CON__P60413;ENSG00000188155|ENST00000400368|KRTAP10-6;ENSG00000272804|ENST00000609664|KRTAP10-7	ENSG00000189169|ENST00000400365|KRTAP10-12	ENSG00000189169|ENST00000400365|KRTAP10-12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.2779137179	1	761.277914	760.270637	2.1315	0.0016227	-1.0334	-0.00078672	1.0981	0.00083598	761.2777193237058	26.191	0.072378	26.191	26.191	26.263	0	654	64	1.2297117	0.03785467	1.2297117	250.73833	0	7.718567						71	4	2	NaN	NaN	NaN	0.84651	1	4217	4217		1.6704	0.42852	1	5134.5		+	19302	201	11031	11377	15370	15370					-0.11908724183558661
PCCEGVVL	8	Unmodified	_PCCEGVVL_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.3739225931	1	819.373923	818.366646	1.6042	0.0013145	2.7832	0.0022805	4.3874	0.0035949	819.3768594452691	24.478	0.096596	24.465	24.417	24.513	-0.012747	468	85	1.3411216	0.050153255	1.3396021	273.1105	0	10.213379						133	5	2	NaN	NaN	NaN	0.82797	1	4888	4888		5.4659	1.4122	1	8325.7	+		19303	8684	11032	11378	15371	15371					-0.04980253071823881
PCCELDLVI	9	Unmodified	_PCCELDLVI_					0	0	0			REV__ENSG00000183665|ENST00000328599|TRMT12	REV__ENSG00000183665|ENST00000328599|TRMT12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4791159461	1	1004.47912	1003.47184	1.9054	0.001914	-0.9651	-0.00096942	0.94035	0.00094456	1004.4788351956616	36.712	0.28881	36.712	36.615	36.904	0	201	121	1.4997677	0.07101774	1.4997677	304.48602	0	14.418182						989	13	5	NaN	NaN	NaN	0.056143	1	8716	8716		44.302	9.0059	1	181150	+		19304	10900	11033	11379	15372	15372					-0.02975756666057805
PCCELDLVI	9	Unmodified	_PCCELDLVI_					0	0	0			REV__ENSG00000183665|ENST00000328599|TRMT12	REV__ENSG00000183665|ENST00000328599|TRMT12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4791159461	1	1004.47912	1003.47184	1.7546	0.0017624	-1.2974	-0.0013032	0.45718	0.00045923	1004.4783667982632	36.709	0.26463	36.711	36.615	36.88	0.0016747	198	127	1.5015416	0.07457662	1.5000222	304.8462	0	15.140686						905	12	4	NaN	NaN	NaN	0.056143	1	8539	8539		44.302	7.7159	1	157660	+		19305	10900	11033	11379	15373	15373					-0.02975756666057805
PCCELDLVI	9	Unmodified						0	0	0			REV__ENSG00000183665|ENST00000328599|TRMT12	REV__ENSG00000183665|ENST00000328599|TRMT12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1004.47912	1003.47184	1.9054	0.001914	-0.9651	-0.00096942	0.94035	0.00094456	1004.4788351956616	36.712	0.28881	36.712	36.615	36.904	0	201	121	1.4997677	0.07101774	1.4997677	304.48602		14.418182	0.00027904	0.0001719	-0.0001273	NaN	44.302	989	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181150	+		19306	10900	11033	11379							-0.02975756666057805
PCCELDLVI	9	Unmodified						0	0	0			REV__ENSG00000183665|ENST00000328599|TRMT12	REV__ENSG00000183665|ENST00000328599|TRMT12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1004.47912	1003.47184	1.7546	0.0017624	-1.2974	-0.0013032	0.45718	0.00045923	1004.4783667982632	36.709	0.26463	36.711	36.615	36.88	0.0016747	198	127	1.5015416	0.07457662	1.5000222	304.8462		15.140686	-0.00027904	-0.00016187	0.0001273	NaN	44.302	905	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157660	+		19307	10900	11033	11379							-0.02975756666057805
PCCGPAVC	8	Unmodified	_PCCGPAVC_					0	0	0		ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.2779137179	1	749.277914	748.270637	1.3266	0.00099396	4.2634	0.0031945	5.5899	0.0041884	749.2820145100214	44.256	0.23965	44.256	44.184	44.424	0	747	55	1.1737292	0.032552958	1.1737292	239.3915	0	6.639435						334	11	4	NaN	NaN	NaN	0.84651	1	4016	4016		1.6704	0	1	36971			19308	6811	11034	11380	15374	15374					-0.11356724183565348
PCDGGSGG	8	Unmodified	_PCDGGSGG_					0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2246158190002	1	649.224616	648.217339	1.4784	0.0009598	4.31	0.0027981	5.7884	0.0037579	649.2276460432294	27.519	0.072397	27.519	27.471	27.543	0	789	52	1.1483859	0.030792236	1.1483859	234.87206	0	6.2977448						76	4	2	NaN	NaN	NaN	0.84945	1	2001	2001		0	0	1	6294.4	+		19309	11342	11035	11381	15375	15375					-0.1208406237019517
PCDGGSGG	8	Unmodified	_PCDGGSGG_					0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.2246158190002	1	649.224616	648.217339	1.414	0.00091802	1.5074	0.00097867	2.9215	0.0018967	649.2259521638881	26.384	0.16891	26.373	26.349	26.517	-0.011137	801	100	1.1411378	0.059830904	1.1396184	233.3897	0	12.236847						243	8	3	NaN	NaN	NaN	0.84945	1	1914	1914		0	0	1	24145	+		19310	11342	11035	11381	15376	15376					-0.1208406237019517
PCDGGSGG	8	Unmodified	_PCDGGSGG_					0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.2246158190002	1	649.224616	648.217339	1.453	0.00094332	3.1984	0.0020765	4.6514	0.0030198	649.2268253243027	27.615	0.096497	27.605	27.605	27.702	-0.009552	783	52	1.1520087	0.030792236	1.1504892	235.613	0	6.2977448						83	5	2	NaN	NaN	NaN	0.84887	1	1915	1915		0.32989	0	1	4953.9	+		19311	11342	11035	11381	15377	15377					-0.1208406237019517
PCDGGSGG	8	Unmodified						0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	649.224616	648.217339	1.7432	0.0011317	1.1269	0.0007316	2.87	0.0018633	649.2249085107293	26.505	0.096531	26.505	26.505	26.601	0	801	85	1.1411378	0.050741196	1.1411378	233.3897		10.377762	0.06605	-0.0001827	0.00075972	NaN	0	128	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8284	+		19312	11342	11035	11381							-0.1208406237019517
PCDGGSGG	8	Unmodified						0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	649.224616	648.217339	1.4784	0.0009598	4.31	0.0027981	5.7884	0.0037579	649.2276460432294	27.519	0.072397	27.519	27.471	27.543	0	789	52	1.1483859	0.030792236	1.1483859	234.87206		6.2977448	-0.043097	0.00024536	-0.0010517	NaN	0.32989	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6294.4	+		19313	11342	11035	11381							-0.1208406237019517
PCDGGSGG	8	Unmodified						0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	649.224616	648.217339	1.414	0.00091802	1.5074	0.00097867	2.9215	0.0018967	649.2259521638881	26.384	0.16891	26.373	26.349	26.517	-0.011137	801	100	1.1411378	0.059830904	1.1396184	233.3897		12.236847	-0.06605	6.437E-05	-0.00075972	NaN	0	243	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24145	+		19314	11342	11035	11381							-0.1208406237019517
PCDGGSGG	8	Unmodified						0	0	0			REV__ENSG00000241697|ENST00000374879|TMEFF1	REV__ENSG00000241697|ENST00000374879|TMEFF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	649.224616	648.217339	1.453	0.00094332	3.1984	0.0020765	4.6514	0.0030198	649.2268253243027	27.615	0.096497	27.605	27.605	27.702	-0.009552	783	52	1.1520087	0.030792236	1.1504892	235.613		6.2977448	0.043097	-0.00047628	0.0010517	NaN	0.32989	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4953.9	+		19315	11342	11035	11381							-0.1208406237019517
PCDPCCGN	8	Unmodified	_PCDPCCGN_					0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	808.2422564931001	1	808.242256	807.23498	1.3332	0.0010776	-7.6487	-0.006182	-6.3154	-0.0051044	808.2373733794436	33.456	0.19293	33.456	33.431	33.624	0	594	103	1.265731	0.061134696	1.265731	257.81644	0	12.452545						439	9	2	NaN	NaN	NaN	0.84887	1	4850	4850		0.32989	0.054495	1	62950	+		19316	13132	11036	11382	15378	15378					-0.1763480643121511
PCDPCCGN	8	Unmodified	_PCDPCCGN_					0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	808.2422564931001	1	808.242256	807.23498	1.6371	0.0013231	-7.7476	-0.0062619	-6.1105	-0.0049388	808.2370369168783	33.238	0.41025	33.238	33.069	33.48	0	594	118	1.265731	0.07014394	1.265731	257.81644	0	14.287613						1269	18	5	NaN	NaN	NaN	0.84887	1	4851	4851		0.32989	0.32989	1	264030	+		19317	13132	11036	11382	15379	15379					-0.1763480643121511
PCDPCCGN	8	Unmodified	_PCDPCCGN_					0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	808.2422564931001	1	808.242256	807.23498	1.464	0.0011833	-7.0453	-0.0056943	-5.5813	-0.004511	808.2380646717737	34.927	0.072319	34.927	34.855	34.927	0	588	76	1.2693287	0.044959188	1.2693287	258.54926	0	9.15773						104	4	2	NaN	NaN	NaN	0.84887	1	4852	4852		0.32989	0.32989	1	8033.9	+		19318	13132	11036	11382	15380	15380					-0.1763480643121511
PCDPCCGN	8	Unmodified	_PCDPCCGN_					0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	808.2422564931001	1	808.242256	807.23498	2.4296	0.0019637	-7.9359	-0.0064141	-5.5063	-0.0044504	808.2382281759379	35.938	0.024055	35.94	35.916	35.94	0.0011024	573	46	1.2783196	0.026975632	1.2768002	260.3806	0	5.494629						46	2	2	NaN	NaN	NaN	0.84727	1	4756	4756		1.2418	1.2418	1	2268.9	+		19319	13132	11036	11382	15381	15381					-0.1763480643121511
PCDPCCGN	8	Unmodified	_PCDPCCGN_					0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	808.2422564931001	1	808.242256	807.23498	1.9086	0.0015426	-3.3432	-0.0027021	-1.4346	-0.0011595	808.2412507336342	35.987	0.12056	35.988	35.988	36.108	0.0011024	585	55	1.2711272	0.032372475	1.2696078	258.9156	0	6.593933						89	6	2	NaN	NaN	NaN	0.84887	1	4757	4757		0.32989	0.32989	1	4414.9	+		19320	13132	11036	11382	15382	15382					-0.1763480643121511
PCDPCCGN	8	Unmodified						0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	808.242256	807.23498	1.3332	0.0010776	-7.6487	-0.006182	-6.3154	-0.0051044	808.2373733794436	33.456	0.19293	33.456	33.431	33.624	0	594	103	1.265731	0.061134696	1.265731	257.81644		12.452545	0	0	0	NaN	0.32989	439	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62950	+		19321	13132	11036	11382							-0.1763480643121511
PCDPCCGN	8	Unmodified						0	0	0			REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	REV__nc|ENSG00000141552|Q9NYG5-2|ANAPC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	808.242256	807.23498	1.464	0.0011833	-7.0453	-0.0056943	-5.5813	-0.004511	808.2380646717737	34.927	0.072319	34.927	34.855	34.927	0	588	76	1.2693287	0.044959188	1.2693287	258.54926		9.15773	0	0	0	NaN	0.32989	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8033.9	+		19322	13132	11036	11382							-0.1763480643121511
PCEDGGGG	8	Unmodified	_PCEDGGGG_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.2351805053003	1	691.235181	690.227904	2.0109	0.00139	2.9814	0.0020608	4.9923	0.0034508	691.2372723644029	26.046	0.2655	26.035	25.769	26.035	-0.011135	750	115	1.1719203	0.0687598	1.1704009	239.38394	0	14.045303						338	12	2	NaN	NaN	NaN	0.84945	1	2966	2966		0	0	1	37576			19323	6033	11037	11383	15383	15383					-0.12960079715753636
PCEDGGGG	8	Unmodified	_PCEDGGGG_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.2351805053003	1	691.235181	690.227904	1.9164	0.0013247	4.3754	0.0030244	6.2918	0.0043491	691.2387383599746	26.118	0.024122	26.107	26.083	26.107	-0.011137	759	103	1.1664921	0.06153512	1.1649727	238.27515	0	12.56955						103	2	2	NaN	NaN	NaN	0.84945	1	2967	2967		0	0	1	12507			19324	6033	11037	11383	15384	15384					-0.12960079715753636
PCEDGGGG	8	Unmodified						0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	691.235181	690.227904	2.1047	0.0014549	3.1339	0.0021663	5.2386	0.0036211	691.2371900567408	26.167	0.12065	26.167	26.119	26.239	0	750	94	1.1719203	0.056090474	1.1719203	239.38394		11.457397	0.029814	-0.00027197	0.0034738	NaN	0	185	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16926			19325	6033	11037	11383							-0.12960079715753636
PCGKWHLIMVG	11	Unmodified	_PCGKWHLIMVG_					0	0	0		ENST00000574517.1_1_17:79210749-79211322:-|nuORF;ENST00000576090.5_1_17:79211175-79211445:-|nuORF	ENST00000574517.1_1_17:79210749-79211322:-|nuORF	ENST00000574517.1_1_17:79210749-79211322:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.82010385665	2	620.820104	1239.62565	0.89604	0.00055628	-9.1392	-0.0056738	-8.2431	-0.0051175	620.8155060979643	34.179	0.072342	34.179	34.155	34.228	0	1143	67	0.9332562	0.040364265	0.9332562	377.96017	0	16.347168						126	4	3	NaN	NaN	NaN	0.688	1	17515	17515		8.2448	3.0559	1	9434.2			19326	7656	11038	11384	15385	15385					0.015426978901132316
PCGPVGAA	8	Unmodified	_PCGPVGAA_					0	0	0			REV__ENST00000262520.10_1_16:30999269-30999425:+|nuORF	REV__ENST00000262520.10_1_16:30999269-30999425:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015	2	336.162699	670.310846	1.5519	0.0005217	7.6016	0.0025554	9.1535	0.0030771	336.16495953839797	42.864	0.071892	42.874	42.851	42.922	0.010418	1524	37	0.698637	0.022324085	0.69711757	285.5724	0	9.125122						47	4	2	NaN	NaN	NaN	0.84876	1	2526	2526		0.39566	0	1	3397.4	+		19327	11552	11039	11385	15386	15386					-0.037497181971275495
PCICLYSCM	9	Unmodified	_PCICLYSCM_					0	0	0			REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.70470221005	2	516.704702	1031.39485	2.0455	0.0010569	-1.9772	-0.0010216	0.06828	3.528E-05	516.703286304099	21.609	0.048206	21.609	21.585	21.633	0	1290	34	0.84311575	0.02029252	0.84311575	342.21228	0	8.236542						41	3	2	NaN	NaN	NaN	0.67818	1	9823	9823		1.072	0	1	2931	+		19328	11884	11040	11386	15387	15387					-0.11959014478406971
PCICLYSCM	9	Unmodified						0	0	0			REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.704702	1031.39485	2.0455	0.0010569	-1.9772	-0.0010216	0.06828	3.528E-05	516.703286304099	21.609	0.048206	21.609	21.585	21.633	0	1290	34	0.84311575	0.02029252	0.84311575	342.21228		8.236542	0.018939	-0.00048811	0.00075972	NaN	1.072	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2931	+		19329	11884	11040	11386							-0.11959014478406971
PCICLYSCM	9	Unmodified						0	0	0			REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	REV__ENST00000370205.5_1_1:95448767-95448839:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.704702	1031.39485	2.2588	0.0011671	-1.0685	-0.00055211	1.1903	0.00061502	516.7043213978233	21.585	0.048288	21.571	21.547	21.595	-0.013895	1290	43	0.84311575	0.0258255	0.8415963	342.21228		10.48233	-0.018939	0.00045095	-0.00075972	NaN	1.072	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2826.3	+		19330	11884	11040	11386							-0.11959014478406971
PCLPSAAA	8	Unmodified	_PCLPSAAA_					0	0	0		ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3599870884	1	729.359987	728.352711	0.88229	0.00064351	-3.9969	-0.0029151	-3.1146	-0.0022716	729.3564907413717	41.52	0.14433	41.529	41.432	41.577	0.0082626	672	73	1.2188909	0.043274045	1.2173715	248.72491	0	8.830429						165	7	2	NaN	NaN	NaN	0.84692	1	3662	3662		1.4396	0.19772	1	12071			19331	6906	11041	11387	15388	15388					-0.022331625086053464
PCLPSQRT	8	Unmodified	_PCLPSQRT_					0	0	0		ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4560127386002	1	901.456013	900.448736	1.375	0.0012395	-11.01	-0.0099249	-9.6348	-0.0086853	901.4455877642564	31.935	0.048279	31.935	31.911	31.959	0	378	43	1.3947657	0.024996638	1.3947657	283.60703	0	5.082733						53	3	2	NaN	NaN	NaN	0.81251	1	6088	6088		7.5404	1.2902	1	3835.9			19332	6625	11042	11388	15389	15389					-0.0054701466849564895
PCNPTGKV	8	Unmodified	_PCNPTGKV_					0	0	0		tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.20763819005003	2	408.207638	814.400723	-0.23969	-9.7843E-05	-0.13275	-5.419E-05	-0.37244	-0.00015203	408.2079144149978	55.098	0.048019	55.097	55.073	55.121	-0.0006218	1467	31	0.7339432	0.018563092	0.7324238	298.94324	0	7.5609436						59	3	3	NaN	NaN	NaN	0.84727	1	4838	4838		1.2418	0	1	5386.9			19333	13863	11043	11389	15390	15390					-0.013900885885504977
PCPAQAGV	8	Unmodified	_PCPAQAGV_					0	0	0			REV__ENSG00000166183|ENST00000551177|ASPG	REV__ENSG00000166183|ENST00000551177|ASPG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3552360615001	1	742.355236	741.34796	0.70504	0.00052339	4.8761	0.0036198	5.5811	0.0041432	742.3599793975416	31.501	0.072401	31.501	31.428	31.501	0	1329	76	0.81912065	0.046179354	0.81912065	167.0943	0	9.420227						128	4	2	NaN	NaN	NaN	0.84887	1	3933	3933		0.32989	0	1	8977.9	+		19334	10416	11044	11390	15391	15391					-0.03306046651357519
PCPGASQP	8	Unmodified	_PCPGASQP_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3345006194	1	756.334501	755.327224	1.2175	0.00092085	-4.0918	-0.0030948	-2.8743	-0.0021739	756.3311057798664	42.097	0.095871	42.106	42.106	42.202	0.0089989	687	55	1.2098682	0.032490373	1.2083488	246.72087	0	6.625534						99	5	2	NaN	NaN	NaN	0.84876	1	4078	4078		0.39566	0	1	5727.1			19335	5274	11045	11391	15392	15392					-0.06022637031026079
PCPGASQP	8	Unmodified						0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.334501	755.327224	1.0429	0.00078877	-3.7009	-0.0027991	-2.658	-0.0020103	756.3322148983736	42.075	0.12	42.075	42.075	42.195	0	684	70	1.2116731	0.041513085	1.2116731	247.08893		8.465515	-0.015688	0.00012831	0.0016622	NaN	0.39566	152	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10323			19336	5274	11045	11391							-0.06022637031026079
PCPGGGAR	8	Unmodified	_PCPGGGAR_					0	0	0		ENST00000379198.3_1_1:1168644-1168980:+|nuORF	ENST00000379198.3_1_1:1168644-1168980:+|nuORF	ENST00000379198.3_1_1:1168644-1168980:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	357.671222894	2	357.671223	713.327893	1.0742	0.0003842	-7.1087	-0.0025426	-6.0345	-0.0021584	357.66855744259857	41.809	0.24023	41.818	41.77	42.01	0.0089989	1479	46	0.72651637	0.027855158	0.7249969	296.61096	0	11.372284						161	11	2	NaN	NaN	NaN	0.84876	1	3413	3413		0.39566	0	1	15798			19337	6718	11046	11392	15393	15393					-0.04023797591321454
PCPGLAAG	8	Unmodified	_PCPGLAAG_					0	0	0		ENST00000367602.7_1_1:180166840-180167017:+|nuORF	REV__ENSG00000125533|ENST00000612929|BHLHE23	REV__ENSG00000125533|ENST00000612929|BHLHE23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.17052440225	2	343.170524	684.326496	1.5749	0.00054045	4.1428	0.0014217	5.7177	0.0019621	343.17141336090356	30.631	0.16888	30.625	30.601	30.77	-0.0057545	1476	40	0.72837335	0.024141133	0.7268539	297.60574	0	9.8638						99	8	2	NaN	NaN	NaN	0.84651	1	2847	2847		1.6704	0	1	7511.6			19338	9396	11047	11393	15394	15394					-0.028294316800725028
PCPGLAAG	8	Unmodified						0	0	0		ENST00000367602.7_1_1:180166840-180167017:+|nuORF	REV__ENSG00000125533|ENST00000612929|BHLHE23	REV__ENSG00000125533|ENST00000612929|BHLHE23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	343.170524	684.326496	1.2854	0.00044112	4.5126	0.0015486	5.798	0.0019897	343.17214892037623	30.632	0.12067	30.632	30.632	30.753	0	1479	37	0.72651637	0.022282898	0.72651637	296.847		9.104553	0.0034002	9.3392E-05	-0.00016879	NaN	1.6704	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6823.6			19339	9396	11047	11393							-0.028294316800725028
PCPHLNCSR	9	Unmodified	_PCPHLNCSR_					0	0	0			REV__nc|ENSG00000100767|O95428-4|PAPLN	REV__nc|ENSG00000100767|O95428-4|PAPLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.73402850355	2	513.734029	1025.4535	1.8184	0.00093419	2.9884	0.0015352	4.8068	0.0024694	513.7355278375587	14.381	0.19195	14.381	14.309	14.501	0	1314	46	0.8283535	0.027692616	0.8283535	336.24606	0	11.241028						180	9	3	NaN	NaN	NaN	0.33629	1	9586	9586		16.584	2.5426	1	20629	+		19340	8831	11048	11394	15395	15395					-0.0582045379740066
PCPPACRHPE	10	Unmodified	_PCPPACRHPE_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7471358788001	2	553.747136	1105.47972	1.4702	0.00081411	-2.9623	-0.0016404	-1.4921	-0.00082625	554.2473799439191	19.972	0.07214	19.972	19.948	20.021	0	1272	37	0.854179	0.022117019	0.854179	346.39658	0	8.969116						59	4	2	NaN	NaN	NaN	0.77513	1	13065	13065		1.7022	0.37103	1	4790.4			19341	4531	11049	11395	15396	15396					-0.06880184625902075
PCPPGGSG	8	Unmodified	_PCPPGGSG_					0	0	0			REV__ENST00000568202.5_1_16:5075546-5083878:-|nuORF	REV__ENST00000568202.5_1_16:5075546-5083878:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2817367674002	1	671.281737	670.27446	0.89282	0.00059934	4.426	0.0029711	5.3188	0.0035704	671.2843261452107	32.996	0.16877	32.993	32.921	33.09	-0.0024757	1125	58	0.9442611	0.034831822	0.94274163	192.99243	0	7.119095						150	8	2	NaN	NaN	NaN	0.84876	1	2512	2512		0.39566	0	1	15118	+		19342	12811	11050	11396	15397	15397					-0.07386595093828419
PCPRSLSW	8	Unmodified	_PCPRSLSW_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.4610981165	1	945.461098	944.453822	2.0138	0.001904	6.1015	0.0057688	8.1153	0.0076727	945.4667827543282	26.239	0.096506	26.228	26.18	26.276	-0.011137	369	52	1.4001206	0.030338526	1.3986012	284.49606	0	6.164612						111	5	2	NaN	NaN	NaN	0.76406	1	6789	6789		14.042	0.30454	1	9723.4	+		19343	8672	11051	11397	15398	15398					-0.020627108058988597
PCRTPPKE	8	Unmodified	_PCRTPPKE_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4716628028001	1	927.471663	926.464386	2.4248	0.0022489	-11.731	-0.01088	-9.3061	-0.0086311	927.462975485413	26.143	0.33789	26.143	25.998	26.336	0	264	118	1.4624695	0.06942272	1.4624695	297.24796	0	14.1102295						434	15	2	NaN	NaN	NaN	0.6117	1	6515	6515		24.562	6.5923	1	42506			19344	493	11052	11398	15399	15399					-0.00178728151456653
PCSAAYLT	8	Unmodified	_PCSAAYLT_					0	0	0			REV__ENSG00000105523|ENST00000263266|FAM83E	REV__ENSG00000105523|ENST00000263266|FAM83E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.19419646379987	2	413.194196	824.37384	1.314	0.00054296	-4.2085	-0.0017389	-2.8945	-0.001196	413.19267277528587	31.597	0.531	31.597	31.477	32.008	0	1428	109	0.7580582	0.06666058	0.7580582	308.70377	0	27.14618						1545	23	5	NaN	NaN	NaN	0.84727	1	5079	5079		1.2418	0	1	474970	+		19345	8962	11053	11399	15400	15400					-0.04537197199761067
PCSAAYLT	8	Unmodified						0	0	0			REV__ENSG00000105523|ENST00000263266|FAM83E	REV__ENSG00000105523|ENST00000263266|FAM83E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	413.194196	824.37384	1.314	0.00054296	-4.2085	-0.0017389	-2.8945	-0.001196	413.19267277528587	31.597	0.531	31.597	31.477	32.008	0	1428	109	0.7580582	0.06666058	0.7580582	308.70377		27.14618	0.099605	-2.6375E-05	-0.011281	NaN	1.2418	1545	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474970	+		19346	8962	11053	11399							-0.04537197199761067
PCSAAYLT	8	Unmodified						0	0	0			REV__ENSG00000105523|ENST00000263266|FAM83E	REV__ENSG00000105523|ENST00000263266|FAM83E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	413.194196	824.37384	0.77054	0.00031838	-3.7488	-0.001549	-2.9782	-0.0012306	413.19294179514714	31.403	0.048256	31.398	31.398	31.446	-0.0050716	1389	109	0.7821392	0.06668949	0.78061974	318.51025		27.157959	-0.099605	0.00035353	0.011281	NaN	1.2418	105	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7691.1	+		19347	8962	11053	11399							-0.04537197199761067
PCSTGFVF	8	Unmodified	_PCSTGFVF_					0	0	0		nc|ENSG00000096006|P54108-3|CRISP3	nc|ENSG00000096006|P54108-3|CRISP3	nc|ENSG00000096006|P54108-3|CRISP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.3862018389001	1	857.386202	856.378925	1.4182	0.0012159	-3.4078	-0.0029218	-1.9897	-0.0017059	857.3827781436422	34.058	0.072433	34.056	34.008	34.08	-0.0012474	492	34	1.3267875	0.01971674	1.325268	269.99344	0	4.0122375						65	4	2	NaN	NaN	NaN	0.72043	1	5346	5346		17.78	7.7288	1	3869.3			19348	7918	11054	11400	15401	15401					-0.05500893337114121
PCVPPVVC	8	Unmodified	_PCVPPVVC_					0	0	0		ENST00000215882.9_1_22:19163467-19163521:-|nuORF	ENST00000215882.9_1_22:19163467-19163521:-|nuORF	ENST00000215882.9_1_22:19163467-19163521:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.20350993985	2	407.20351	812.392467	1.0488	0.00042707	0.71654	0.00029178	1.7653	0.00071885	407.2039152450989	26.818	0.16893	26.808	26.759	26.928	-0.010645	1455	37	0.7413668	0.02226597	0.73984736	301.9793	0	9.06958						118	8	3	NaN	NaN	NaN	0.84651	1	4815	4815		1.6704	0	1	10407			19349	6226	11055	11401	15402	15402					-0.021233588295331174
PDAGAAIP	8	Unmodified	_PDAGAAIP_					0	0	0		ENST00000587252.5_1_19:56147051-56155987:+|nuORF;ENST00000270451.5_1_19:56155104-56155987:+|nuORF	ENST00000587252.5_1_19:56147051-56155987:+|nuORF	ENST00000587252.5_1_19:56147051-56155987:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3671809563001	1	711.367181	710.359904	1.1764	0.00083684	5.6643	0.0040294	6.8407	0.0048663	711.3712886214317	34.638	0.12059	34.638	34.614	34.734	0	585	49	1.2711272	0.028775454	1.2711272	259.50543	0	5.8746033						120	6	2	NaN	NaN	NaN	0.82332	1	3428	3428		6.0903	0	1	12144			19350	6337	11056	11402	15403	15403					-0.006861066365217994
PDAGAALL	8	Unmodified	_PDAGAALL_					0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3984810847002	1	727.398481	726.391205	1.1287	0.000821	-0.58586	-0.00042615	0.54282	0.00039484	727.397828347709	20.67	0.14469	20.656	20.608	20.752	-0.014086	648	43	1.2333171	0.025235176	1.2317977	251.68124	0	5.1496887						125	7	3	NaN	NaN	NaN	0.30832	1	3627	3627		41.46	7.7618	1	12542	+		19351	13154	11057	11403	15404	15404					0.017064663975816075
PDAGAALL	8	Unmodified						0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	727.398481	726.391205	1.1038	0.00080294	-0.19301	-0.00014039	0.91084	0.00066254	727.3979923352938	20.67	0.12048	20.67	20.622	20.742	0	648	43	1.2333171	0.025237799	1.2333171	251.68123		5.150238	0.0068816	0.00018374	0.00075972	NaN	41.46	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12985	+		19352	13154	11057	11403							0.017064663975816075
PDAGAALL	8	Unmodified						0	0	0			REV__nc|ENSG00000162129|Q9H078-4|CLPB	REV__nc|ENSG00000162129|Q9H078-4|CLPB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	727.398481	726.391205	1.1287	0.000821	-0.58586	-0.00042615	0.54282	0.00039484	727.397828347709	20.67	0.14469	20.656	20.608	20.752	-0.014086	648	43	1.2333171	0.025235176	1.2317977	251.68124		5.1496887	-0.0068816	-0.00010202	-0.00075972	NaN	41.46	125	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12542	+		19353	13154	11057	11403							0.017064663975816075
PDAGLAAL	8	Unmodified	_PDAGLAAL_					0	0	0			REV__ENSG00000184261|ENST00000327876|KCNK12	REV__ENSG00000184261|ENST00000327876|KCNK12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3984810846999	1	727.398481	726.391205	1.1038	0.00080294	-0.19301	-0.00014039	0.91084	0.00066254	727.3979923352938	20.67	0.12048	20.67	20.622	20.742	0	648	43	1.2333171	0.025237799	1.2333171	251.68123	0	5.150238						122	6	2	NaN	NaN	NaN	0.57691	1	3711	3711		26.732	0	1	12985			19354	10916	11058	11404	15405	15405					0.0170646639755887
PDALKFTSI	9	Unmodified	_PDALKFTSI_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.276575035	2	496.276575	990.538597	1.5374	0.00076298	-10.467	-0.0051944	-8.9294	-0.0044314	496.2715815742203	20.333	0.14424	20.333	20.285	20.429	0	1350	46	0.80618626	0.027722597	0.80618626	327.4007	0	11.258423						167	7	3	NaN	NaN	NaN	0.25424	1	8239	8239		21.85	3.8807	1	28246			19355	5739	11059	11405	15406	15406					0.04294938211717181
PDATGPNILV	10	Unmodified	_PDATGPNILV_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.7716568326	2	498.771657	995.528761	1.3898	0.00069318	-7.7885	-0.0038847	-6.3987	-0.0031915	498.7689270629856	20.935	0.096149	20.935	20.911	21.007	0	1302	58	0.8357362	0.03506595	0.8357362	339.37793	0	14.239655						88	5	2	NaN	NaN	NaN	0.76892	1	8412	8412		3.2116	0.058268	1	7949			19356	1702	11060	11406	15407	15407					0.03081750206331435
PDDQAGYGPPS	11	Unmodified	_PDDQAGYGPPS_					0	0	0			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2356354670501	2	552.235635	1102.45672	1.1612	0.00064124	7.8306	0.0043243	8.9918	0.0049656	552.7415134719306	30.872	0.096561	30.866	30.842	30.939	-0.0057545	1284	79	0.8468043	0.04790461	0.8452849	343.41742	0	19.42749						161	5	4	NaN	NaN	NaN	0.47586	1	12585	12585		19.336	6.7667	1	11420	+		19357	11219	11061	11407	15408	15408					-0.09041208938037926
PDDQAGYGPPS	11	Unmodified						0	0	0			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.235635	1102.45672	0.66757	0.00036866	8.9366	0.0049351	9.6042	0.0053038	552.7405171633498	30.873	0.14475	30.873	30.825	30.97	0	1281	61	0.84864825	0.036869586	0.84864825	344.16525		14.952301	0.0034287	0.0006208	0.0016817	NaN	19.336	160	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11590	+		19358	11219	11061	11407							-0.09041208938037926
PDDQAGYGPPS	11	Unmodified						0	0	0			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.235635	1102.45672	1.1612	0.00064124	7.8306	0.0043243	8.9918	0.0049656	552.7415134719306	30.872	0.096561	30.866	30.842	30.939	-0.0057545	1284	79	0.8468043	0.04790461	0.8452849	343.41742		19.42749	-0.0034287	-0.00060072	-0.0016817	NaN	19.336	161	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11420	+		19359	11219	11061	11407							-0.09041208938037926
PDEAGGVV	8	Unmodified	_PDEAGGVV_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0-2|OTOG	REV__nc|ENSG00000188162|Q6ZRI0-2|OTOG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3570102005001	1	743.35701	742.349734	1.3819	0.0010273	3.7963	0.002822	5.1783	0.0038493	743.3593651309515	24.767	0.096523	24.767	24.719	24.816	0	606	52	1.2585332	0.030595064	1.2585332	256.7248	0	6.241028						85	5	2	NaN	NaN	NaN	0.84692	1	3945	3945		1.4396	0	1	6592.1	+		19360	11049	11062	11408	15409	15409					-0.0317471436175083
PDEAGGVV	8	Unmodified						0	0	0			REV__nc|ENSG00000188162|Q6ZRI0-2|OTOG	REV__nc|ENSG00000188162|Q6ZRI0-2|OTOG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.35701	742.349734	1.3819	0.0010273	3.7963	0.002822	5.1783	0.0038493	743.3593651309515	24.767	0.096523	24.767	24.719	24.816	0	606	52	1.2585332	0.030595064	1.2585332	256.7248		6.241028	0.0062738	0.00077939	-0.0010399	NaN	1.4396	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6592.1	+		19361	11049	11062	11408							-0.0317471436175083
PDEKETRL	8	Unmodified	_PDEKETRL_					0	0	0		ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	ENST00000550632.5_1_12:62654195-62749153:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.2589135980999	2	494.258914	986.503274	1.0312	0.00050969	-1.5672	-0.00077461	-0.536	-0.00026492	494.25841295522594	14.356	0.11974	14.345	14.297	14.417	-0.011218	1512	31	0.7060759	0.018593311	0.70455647	286.76086	0	7.551361						93	6	3	NaN	NaN	NaN	0.63537	1	7931	7931		23.086	6.2275	1	7613.2			19362	2952	11063	11409	15410	15410					0.009482756838906425
PDFDFPPEFY	10	Unmodified	_PDFDFPPEFY_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.2742293113	2	637.274229	1272.53391	0.98932	0.00063047	-1.5116	-0.00096332	-0.52231	-0.00033285	637.2744234573724	35.096	0.36187	35.096	34.951	35.313	0	1182	118	0.9093879	0.07158959	0.9093879	368.18878	0	28.984863						571	16	3	NaN	NaN	NaN	0.68669	1	18269	18269		8.962	0	1	57206			19363	1010	11064	11410	15411	15411					-0.09145990721708586
PDFDFPPEFY	10	Unmodified						0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.274229	1272.53391	1.3898	0.00088567	-1.3411	-0.00085467	0.048636	3.0994E-05	637.2741597814197	35.07	0.21722	35.07	34.974	35.191	-4.5776E-05	1179	118	0.9112251	0.071558714	0.90970564	368.93262		28.972382	-0.012797	0.00012778	0.00015889	NaN	8.962	498	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54541			19364	1010	11064	11410							-0.09145990721708586
PDFGGNVLL	9	Unmodified	_PDFGGNVLL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	931.4883587245	1	931.488359	930.481082	1.214	0.0011309	-2.9917	-0.0027867	-1.7776	-0.0016558	931.4878209071362	28.604	0.26542	28.596	28.523	28.789	-0.0083504	309	148	1.435777	0.08738124	1.4342575	291.8042	0	17.759186						527	12	4	NaN	NaN	NaN	0.060816	1	6481	6481		42.318	2.8588	1	81857			19365	7955	11065	11411	15412	15412					0.013060960061352489
PDGAPEHA	8	Unmodified	_PDGAPEHA_					0	0	0		nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.17739230664995	2	397.177392	792.340232	1.1906	0.00047286	5.6165	0.0022307	6.807	0.0027036	397.17968375862694	28.435	0.28955	28.426	28.354	28.643	-0.0089798	1461	49	0.7376554	0.02969122	0.73613596	300.59363	0	12.099121						277	13	2	NaN	NaN	NaN	0.8439	1	4569	4569		3.1533	0.36816	1	95548			19366	6126	11066	11412	15413	15413					-0.06424482647287277
PDGAPEHA	8	Unmodified						0	0	0		nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	397.177392	792.340232	1.5452	0.00061373	4.5097	0.0017912	6.0549	0.0024049	397.1795691862041	28.363	0.26548	28.363	28.339	28.605	0	1461	49	0.7376554	0.029694438	0.7376554	300.59363		12.100464	-0.03137	-0.00063658	0.00075972	NaN	3.1533	319	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98083			19367	6126	11066	11412							-0.06424482647287277
PDGCMLCMVIR	11	Unmodified	_PDGCMLCMVIR_					0	0	0			REV__ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	REV__ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.1901852556	3	413.190185	1236.54873	1.2528	0.00051764	4.6243	0.0019107	5.8771	0.0024284	413.5252941252443	29.232	0.072384	29.232	29.208	29.28	0	1431	34	0.75620437	0.020393908	0.75620437	459.39212	0	12.389252						87	4	3	NaN	NaN	NaN	0.73455	1	17433	17433		2.0359	0	1	7512.4	+		19368	8141	11067	11413	15414	15414					-0.06008604712883425
PDGDGGCP	8	Unmodified	_PDGDGGCP_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.2508305695	1	717.250831	716.243554	1.3883	0.00099577	1.9176	0.0013754	3.3059	0.0023711	717.2525290100336	26.36	0.19303	26.349	26.276	26.469	-0.011135	717	94	1.1918083	0.056024432	1.1902889	243.2744	0	11.435822						277	9	3	NaN	NaN	NaN	0.84692	1	3459	3459		1.4396	1.0439	1	27040	+		19369	10246	11068	11414	15415	15415					-0.12591793198737378
PDGDGGCP	8	Unmodified						0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	717.250831	716.243554	1.7453	0.0012518	0.83296	0.00059744	2.5782	0.0018492	717.2507180498877	25.998	0.16891	25.998	25.829	25.998	0	714	103	1.1936152	0.061455965	1.1936152	243.64322		12.544525	-0.17531	-0.0005065	0.0016631	NaN	1.4396	230	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25206	+		19370	10246	11068	11414							-0.12591793198737378
PDGDGGCP	8	Unmodified						0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.250831	716.243554	1.3883	0.00099577	1.9176	0.0013754	3.3059	0.0023711	717.2525290100336	26.36	0.19303	26.349	26.276	26.469	-0.011135	717	94	1.1918083	0.056024432	1.1902889	243.2744		11.435822	0.17531	0.00027143	-0.0016631	NaN	1.4396	277	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27040	+		19371	10246	11068	11414							-0.12591793198737378
PDGFSSVL	8	Unmodified	_PDGFSSVL_					0	0	0			REV__ENST00000368346.7_1_1:155491352-155532063:-|nuORF	REV__ENST00000368346.7_1_1:155491352-155532063:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4039603931002	1	821.40396	820.396684	2.2891	0.0018803	-1.0803	-0.00088733	1.2089	0.00099297	821.4026566573544	22.887	0.1206	22.887	22.838	22.959	0	498	46	1.3232021	0.026892185	1.3232021	269.45035	0	5.476166						80	6	2	NaN	NaN	NaN	0.78264	1	5022	5022		11.548	0	1	5302.3	+		19372	11871	11069	11415	15416	15416					-0.02069854810599736
PDGGGSPW	8	Unmodified	_PDGGGSPW_					0	0	0			REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.3260444231	1	772.326044	771.318768	1.4791	0.0011424	5.1295	0.0039617	6.6087	0.0051041	772.3303170079523	27.229	0.14478	27.229	27.181	27.326	0	597	37	1.2639319	0.021590829	1.2639319	257.65036	0	4.401245						107	7	2	NaN	NaN	NaN	0.80692	1	4370	4370		8.2903	1.4271	1	6773.3	+		19373	12394	11070	11416	15417	15417					-0.0760386767599357
PDGGGSPW	8	Unmodified						0	0	0			REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	772.326044	771.318768	1.4791	0.0011424	5.1295	0.0039617	6.6087	0.0051041	772.3303170079523	27.229	0.14478	27.229	27.181	27.326	0	597	37	1.2639319	0.021590829	1.2639319	257.65036		4.401245	0.0054453	-0.00066823	-0.00013985	NaN	8.2903	107	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6773.3	+		19374	12394	11070	11416							-0.0760386767599357
PDGGGSPW	8	Unmodified						0	0	0			REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	REV__ENST00000482818.1_1_22:29728015-29728231:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	772.326044	771.318768	1.8013	0.0013912	7.6218	0.0058865	9.4231	0.0072777	772.3314677303738	27.228	0.12065	27.218	27.17	27.291	-0.010124	594	37	1.265731	0.021588564	1.2642115	258.01712		4.4007874	-0.0054453	0.0012566	0.00013985	NaN	8.2903	66	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4381.7	+		19375	12394	11070	11416							-0.0760386767599357
PDGSDEGYLCD	11	Unmodified	_PDGSDEGYLCD_					0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant;ENSG00000168702|ENST00000389484|LRP1B	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.71641825865	2	585.716418	1169.41828	1.8623	0.0010908	1.5508	0.00090834	3.4132	0.0019991	585.7179937834266	27.181	0.19302	27.181	27.133	27.326	0	1227	121	0.88180584	0.07362777	0.88180584	357.35925	0	29.838287						771	9	4	NaN	NaN	NaN	0.76488	1	15455	15455		2.8895	0.10428	1	150380			19376	7864	11071	11417	15418	15418					-0.1596488263487572
PDICRWPL	8	Unmodified	_PDICRWPL_					0	0	0		ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5080483091	1	999.508048	998.500772	1.043	0.0010425	8.0039	0.008	9.047	0.0090425	999.5145514907584	39.863	0.096313	39.863	39.863	39.959	0	234	67	1.4802408	0.039088726	1.4802408	300.5419	0	7.936432						148	5	3	NaN	NaN	NaN	0.82797	1	8524	8524		5.4659	1.4973	1	11027			19377	6666	11072	11418	15419	15419					0.0014614874523886101
PDIDLNKA	8	Unmodified	_PDIDLNKA_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4676232823999	1	885.467623	884.460347	1.9811	0.0017542	-7.6439	-0.0067684	-5.6628	-0.0050142	885.459967969737	39.042	0.072231	39.047	38.999	39.071	0.0046806	450	49	1.3518641	0.028631568	1.3503447	274.95834	0	5.823395						60	4	2	NaN	NaN	NaN	0.8439	1	5740	5740		3.1533	0	1	4388.1	+		19378	10111	11073	11419	15420	15420					0.013495056264673622
PDIDRVTSRA	10	Unmodified	_PDIDRVTSRA_					0	0	0			REV__ENSG00000125971|ENST00000357156|DYNLRB1	REV__ENSG00000125971|ENST00000357156|DYNLRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.5960116935	1	1129.59601	1128.58874	1.5672	0.0017703	-0.013035	-1.4724E-05	1.5542	0.0017556	1129.596803538466	31.186	0.048252	31.181	31.157	31.205	-0.0050716	96	40	1.5617468	0.022976995	1.5602274	316.5924	0	4.6578064						44	3	2	NaN	NaN	NaN	0.76025	1	13591	13591		3.9281	0.35833	1	3228.2	+		19379	9409	11074	11420	15421	15421					0.02958440869565493
PDISYVPYI	9	Unmodified	_PDISYVPYI_					0	0	0			REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5455392524	1	1066.54554	1065.53826	1.0098	0.001077	-0.65705	-0.00070077	0.35276	0.00037624	1066.5442644188183	30.341	0.19301	30.335	30.263	30.456	-0.0064106	135	124	1.5387528	0.07253504	1.5372335	312.15417	0	14.7146						523	9	3	NaN	NaN	NaN	0.23112	1	11105	11105		23.334	2.779	1	93130	+		19380	12832	11075	11421	15422	15422					0.008115184918551677
PDISYVPYI	9	Unmodified						0	0	0			REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1066.54554	1065.53826	1.0098	0.001077	-0.65705	-0.00070077	0.35276	0.00037624	1066.5442644188183	30.341	0.19301	30.335	30.263	30.456	-0.0064106	135	124	1.5387528	0.07253504	1.5372335	312.15417		14.7146	-0.0036985	0.00026434	0.00012532	NaN	23.334	523	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93130	+		19381	12832	11075	11421							0.008115184918551677
PDITVQWMKD	10	Unmodified	_PDITVQWMKD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1232.5979855284	1	1232.59799	1231.59071	1.3967	0.0017216	-2.8337	-0.0034928	-1.437	-0.0017712	1232.5948127670229	29.569	0.048277	29.562	29.538	29.586	-0.0070667	549	205	1.292695	0.12210035	1.2911756	261.78595	0	24.726746						199	3	2	NaN	NaN	NaN	0.70677	1	16587	16587		7.5876	2.3987	1	14140			19382	3883;7967	11076	11422	15423	15423					-0.01582266436844293
PDLDRHQL	8	Unmodified	_PDLDRHQL_					0	0	0		ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	ENSG00000166171|ENST00000370151|DPCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.25924794910003	2	497.259248	992.503943	1.7885	0.00088933	-0.58251	-0.00028966	1.206	0.00059967	497.25861290488626	17.882	0.095984	17.868	17.844	17.94	-0.013786	1485	43	0.72280174	0.026010871	0.7212823	293.52936	0	10.562988						79	5	2	NaN	NaN	NaN	0.79149	1	8149	8149		10.36	0.61416	1	6962.4			19383	4455	11077	11423	15424	15424					0.007391151236220139
PDLELADDLK	10	Unmodified	_PDLELADDLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7927862052	2	564.792786	1127.57102	1.4686	0.00082945	-2.2157	-0.0012514	-0.7471	-0.00042195	564.7912606210776	24.309	0.072416	24.296	24.248	24.32	-0.012749	1164	61	0.9204082	0.036734402	0.91888875	373.16452	0	14.893341						57	4	2	NaN	NaN	NaN	0.62764	1	13556	13556		13.003	0	1	7882.4			19384	3883	11078	11424	15425	15425					0.012336808240206665
PDLGQVPEIH	10	Unmodified	_PDLGQVPEIH_					0	0	0		ENSG00000181404|ENST00000696149|WASHC1	ENSG00000181404|ENST00000696149|WASHC1	ENSG00000181404|ENST00000696149|WASHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.78783821305	2	552.787838	1103.56112	1.4256	0.00078808	-1.1642	-0.00064354	0.26147	0.00014454	552.7873471919343	19.563	0.072218	19.549	19.524	19.597	-0.014141	1248	55	0.8689189	0.03315395	0.86739945	352.3816	0	13.445282						146	4	3	NaN	NaN	NaN	0.60686	1	12647	12647		14.425	0	1	19161			19385	5223	11079	11425	15426	15426					0.013485376093285595
PDLIPALT	8	Unmodified	_PDLIPALT_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.2472862792999	2	420.247286	838.48002	1.3714	0.00057634	-8.641	-0.0036314	-7.2695	-0.003055	420.24379122147775	29.329	0.048258	29.329	29.305	29.353	0	1401	46	0.77473325	0.027782738	0.77473325	315.40753	0	11.310852						61	3	2	NaN	NaN	NaN	0.84455	1	5253	5253		2.7852	0	1	3913.9			19386	2225	11080	11426	15427	15427					0.05431881637207425
PDLLDYGSL	9	Unmodified	_PDLLDYGSL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.75039007425	2	496.75039	991.486227	1.1772	0.00058477	6.5808	0.003269	7.758	0.0038538	496.7541222473629	27.253	0.072399	27.242	27.218	27.291	-0.010126	1302	34	0.8357362	0.020299077	0.8342168	339.39673	0	8.243591						62	4	2	NaN	NaN	NaN	0.66529	1	8094	8094		2.1763	0.50597	1	4935.5			19387	3115	11081	11427	15428	15428					-0.009856449219000751
PDLLDYGSL	9	Unmodified						0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.75039	991.486227	1.5411	0.00076556	3.0508	0.0015155	4.592	0.0022811	496.7524843487034	27.229	0.072346	27.229	27.205	27.277	0	1302	34	0.8357362	0.020299077	0.8357362	339.39676		8.243561	-0.0066315	-0.0017485	0.00075972	NaN	2.1763	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3465.7			19388	3115	11081	11427							-0.009856449219000751
PDLLSPTPHF	10	Unmodified	_PDLLSPTPHF_					0	0	0			REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.19759643249995	3	375.197596	1122.57096	1.6161	0.00060635	-5.0134	-0.001881	-3.3973	-0.0012747	375.195418252001	15.558	0.072031	15.558	15.534	15.606	0	1482	37	0.72465914	0.022282898	0.72465914	440.72083	0	13.551971						69	4	2	NaN	NaN	NaN	0.77421	1	13794	13794		0.71611	0	1	5958.1	+		19389	12632	11082	11428	15429	15429					0.014577256146822037
PDLTVVGII	9	Unmodified	_PDLTVVGII_					0	0	0		ENST00000342992.10_3_2:179427622-179427661:-|nuORF	ENST00000342992.10_3_2:179427622-179427661:-|nuORF	ENST00000342992.10_3_2:179427622-179427661:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.78149323740007	2	463.781493	925.548434	1.0056	0.00046636	-2.2446	-0.001041	-1.239	-0.00057463	463.7803998800018	26.65	0.24185	26.65	26.553	26.795	0	1347	43	0.8080346	0.025878608	0.8080346	328.4667	0	10.519714						181	11	2	NaN	NaN	NaN	0.14301	1	6510	6510		29.598	0.70274	1	17861			19390	6547	11083	11429	15430	15430					0.082681262171036
PDMDVILN	8	Unmodified	_PDMDVILN_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.72586073294997	2	458.725861	915.437169	1.2092	0.0005547	-1.8588	-0.0008527	-0.64961	-0.00029799	458.72488969874786	28.122	0.19307	28.122	28.05	28.243	0	1359	43	0.8006399	0.025889874	0.8006399	325.51334	0	10.52594						155	9	2	NaN	NaN	NaN	0.65075	1	6326	6326		22.126	5.7097	1	18444			19391	5629	11084	11430	15431	15431					-0.023932564825031477
PDMSLSCG	8	Unmodified	_PDMSLSCG_					0	0	0			REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3168016447001	1	809.316802	808.309525	1.4317	0.0011587	5.066	0.0041	6.4977	0.0052587	809.320766447932	20.549	0.31311	20.535	20.415	20.728	-0.014141	549	58	1.292695	0.034128904	1.2911756	263.30283	0	6.951538						306	14	2	NaN	NaN	NaN	0.80071	1	4767	4767		9.1232	0.83292	1	34030	+		19392	13338	11085	11431	15432	15432					-0.10229720348183946
PDMSLSCG	8	Unmodified						0	0	0			REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.316802	808.309525	1.734	0.0014033	4.7637	0.0038553	6.4976	0.0052587	809.3209695440876	20.573	0.28877	20.573	20.429	20.718	0	552	55	1.2908988	0.032334447	1.2908988	262.93695		6.586029	0.018998	-0.00012573	-0.00013841	NaN	9.1232	337	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32930	+		19393	13338	11085	11431							-0.10229720348183946
PDMSLSCG	8	Unmodified						0	0	0			REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.316802	808.309525	1.4317	0.0011587	5.066	0.0041	6.4977	0.0052587	809.320766447932	20.549	0.31311	20.535	20.415	20.728	-0.014141	549	58	1.292695	0.034128904	1.2911756	263.30283		6.951538	-0.018998	0.00011894	0.00013841	NaN	9.1232	306	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34030	+		19394	13338	11085	11431							-0.10229720348183946
PDMVDILN	8	Unmodified	_PDMVDILN_					0	0	0		nc|ENSG00000072182|Q96FT7-2|ASIC4;ENST00000461395.5_1_2:220378960-220396865:+|nuORF;nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.72586073294997	2	458.725861	915.437169	0.70328	0.00032261	-1.8763	-0.00086071	-1.173	-0.0005381	458.7251630317189	28.145	0.19307	28.137	28.064	28.257	-0.0089798	1359	49	0.8006399	0.029585183	0.7991205	325.51334	0	12.028351						243	9	3	NaN	NaN	NaN	0.76406	1	6208	6208		14.042	0	1	29223			19395	790	11086	11432	15433	15433					-0.023932564825031477
PDMVVSHL	8	Unmodified	_PDMVVSHL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.22857059740005	2	449.228571	896.442588	1.7622	0.00079163	-5.1506	-0.0023138	-3.3884	-0.0015222	449.2265144653662	24.285	0.048279	24.272	24.248	24.296	-0.012749	1380	34	0.7876915	0.020354152	0.78617203	320.34924	0	8.277893						42	3	2	NaN	NaN	NaN	0.80692	1	5894	5894		8.2903	4.2366	1	3519.6			19396	1474	11087	11433	15434	15434					-0.009775329000149213
PDNLQELCI	9	Unmodified	_PDNLQELCI_					0	0	0			REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.75514948865	2	522.755149	1043.49575	1.1727	0.00061304	-5.5476	-0.0029	-4.3749	-0.002287	522.7520704704967	14.597	0.1441	14.597	14.573	14.717	0	1287	43	0.8449601	0.025817096	0.8449601	342.9085	0	10.477295						93	7	2	NaN	NaN	NaN	0.31737	1	10349	10349		17.799	1.2148	1	9473.7	+		19397	9830	11088	11434	15435	15435					-0.024261999080408714
PDPGGGGGG	9	Unmodified	_PDPGGGGGG_					0	0	0		ENST00000477957.1_1_1:229743577-229761715:-|nuORF	ENST00000477957.1_1_1:229743577-229761715:-|nuORF	ENST00000477957.1_1_1:229743577-229761715:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.2790942305002	1	670.279094	669.271818	1.0502	0.00070394	-4.3503	-0.0029159	-3.3001	-0.002212	670.2768716212945	29.569	0.0965	29.562	29.514	29.61	-0.0070667	702	76	1.2008407	0.04517126	1.1993213	245.44075	0	9.23259						150	5	3	NaN	NaN	NaN	0.68801	1	2485	2485		0.23014	0.23014	1	14642			19398	7186	11089	11435	15436	15436					-0.07604727227123931
PDPGGSGV	8	Unmodified	_PDPGGSGV_					0	0	0		ENST00000544451.2_1_8:52746202-52811685:-|nuORF	ENST00000544451.2_1_8:52746202-52811685:-|nuORF	ENST00000544451.2_1_8:52746202-52811685:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3151453858001	1	685.315145	684.307869	1.2707	0.00087085	-9.7056	-0.0066514	-8.4349	-0.0057805	685.3081736977522	34.251	0.16895	34.249	34.105	34.274	-0.0012474	1107	73	0.9552588	0.04398626	0.9537394	195.16016	0	8.986435						171	8	2	NaN	NaN	NaN	0.84455	1	2839	2839		2.7852	1.1148	1	17738			19399	7514	11090	11436	15437	15437					-0.04691270050284402
PDPHGLWL	8	Unmodified	_PDPHGLWL_					0	0	0		ENST00000595934.1_1_19:50360913-50361129:+|nuORF	ENST00000595934.1_1_19:50360913-50361129:+|nuORF	ENST00000595934.1_1_19:50360913-50361129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4781283892002	1	934.478128	933.470852	2.0726	0.0019368	-3.2229	-0.0030117	-1.1503	-0.0010749	934.4749057292161	23.272	0.07238	23.272	23.272	23.345	0	336	46	1.419741	0.02674079	1.419741	288.53162	0	5.4345093						70	4	2	NaN	NaN	NaN	0.77489	1	6688	6688		12.588	0	1	5444.4			19400	7753	11091	11437	15438	15438					0.001455330715771197
PDPNGGAA	8	Unmodified	_PDPNGGAA_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3103943589	1	698.310394	697.303118	1.0802	0.00075435	-2.7375	-0.0019116	-1.6572	-0.0011573	698.3081640742478	26.408	0.16891	26.397	26.3	26.469	-0.011137	1089	85	0.96624947	0.05126202	0.96473	197.33337	0	10.46904						207	8	2	NaN	NaN	NaN	0.84887	1	3107	3107		0.32989	0	1	19243	+		19401	9854	11092	11438	15439	15439					-0.057641541930479434
PDPPSSVPLQS	11	Unmodified	_PDPPSSVPLQS_					0	0	0		ENST00000472880.1_1_20:61467424-61467763:+|nuORF	ENST00000472880.1_1_20:61467424-61467763:+|nuORF	ENST00000472880.1_1_20:61467424-61467763:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2851283486001	2	562.285128	1122.5557	1.8089	0.0010171	7.9272	0.0044573	9.7361	0.0054745	562.2898125283294	26.625	0.21768	26.625	26.601	26.819	0	1200	100	0.89836043	0.06071335	0.89836043	364.2452	0	24.616577						235	10	2	NaN	NaN	NaN	0.65577	1	13793	13793		10.36	2.7726	1	54200			19402	7165	11093	11439	15440	15440					-0.0006718597312556085
PDPRTELQVRQ	11	Unmodified	_PDPRTELQVRQ_					0	0	0		ENST00000372663.8_1_9:131483181-131483412:-|nuORF	ENST00000372663.8_1_9:131483181-131483412:-|nuORF	ENST00000372663.8_1_9:131483181-131483412:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8598574506999	2	669.859857	1337.70516	1.2624	0.00084566	-5.3682	-0.003596	-4.1058	-0.0027503	670.3577337251077	38.994	0.096172	38.999	38.951	39.047	0.0046806	1194	76	0.902037	0.045935333	0.9005176	365.0215	0	18.588379						386	5	5	NaN	NaN	NaN	0.76803	1	18508	18508		2.3381	0.4135	1	37314			19403	6663	11094	11440	15441	15441					0.04981759369434258
PDQTPRVEML	10	Unmodified	_PDQTPRVEML_					0	0	0			REV__POM121L12|p.I78M|1|0.24|ENSG00000221900|chr7:53035905-53035905|C/G|missense_variant	REV__POM121L12|p.I78M|1|0.24|ENSG00000221900|chr7:53035905-53035905|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.3002554840501	2	593.300255	1184.58596	1.0422	0.00061833	3.1593	0.0018744	4.2014	0.0024927	593.30303723681	22.332	0.21688	22.318	22.173	22.39	-0.013731	1191	79	0.90387505	0.047790825	0.9023556	366.2483	0	19.364746						460	10	4	NaN	NaN	NaN	0.31086	1	15389	15389		27.296	4.2104	1	134040	+		19404	13296	11095	11441	15442	15442					0.001048494204042072
PDRKIEPFYIG	11	Unmodified	_PDRKIEPFYIG_					0	0	0			REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.5749553676667	3	445.574955	1333.70304	0.83962	0.00037411	4.622	0.0020595	5.4617	0.0024336	445.5769004754785	12.606	0.2403	12.597	12.501	12.741	-0.0088415	1371	46	0.79324204	0.027752638	0.7917226	481.50522	0	16.84613						254	11	4	NaN	NaN	NaN	0.51407	1	18447	18447		12.872	7.9714	1	39824	+		19405	10785	11096	11442	15443	15443					0.04953330631656172
PDRKIEPFYIG	11	Unmodified						0	0	0			REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	445.574955	1333.70304	0.79658	0.00035494	3.5892	0.0015993	4.3858	0.0019542	445.5763246425538	12.436	0.192	12.436	12.412	12.604	0	1371	55	0.79324204	0.03330499	0.79324204	481.50522		20.21643	-0.08059	-0.00070718	0.00075972	NaN	12.872	219	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45440	+		19406	10785	11096	11442							0.04953330631656172
PDRKIEPFYIG	11	Unmodified						0	0	0			REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	REV__nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	445.574955	1333.70304	0.83962	0.00037411	4.622	0.0020595	5.4617	0.0024336	445.5769004754785	12.606	0.2403	12.597	12.501	12.741	-0.0088415	1371	46	0.79324204	0.027752638	0.7917226	481.50522		16.84613	0.08059	0.00067337	-0.00075972	NaN	12.872	254	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39824	+		19407	10785	11096	11442							0.04953330631656172
PDRRQQRWR	9	Unmodified	_PDRRQQRWR_					0	0	0			REV__ENST00000546514.1_1_12:50561052-50561130:-|nuORF	REV__ENST00000546514.1_1_12:50561052-50561130:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.2376710196	3	433.237671	1296.69118	1.3334	0.00057766	-9.0606	-0.0039254	-7.7272	-0.0033477	433.23368640828386	22.91	0.24104	22.896	22.824	23.065	-0.01354	1386	91	0.78399014	0.055574596	0.7824707	476.02838	0	33.74411						380	11	4	NaN	NaN	NaN	0.49672	1	17883	17883		5.9198	0	1	106570	+		19408	12716	11097	11443	15444	15444					0.05470571451678552
PDRSDLPCP	9	Unmodified	_PDRSDLPCP_					0	0	0			REV__ENST00000395407.6_1_15:69591322-69629759:+|nuORF	REV__ENST00000395407.6_1_15:69591322-69629759:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.23184156785	2	500.231842	998.44913	1.5599	0.00078031	-2.978	-0.0014897	-1.4181	-0.00070937	500.2314539195039	29.039	0.21721	29.039	28.967	29.184	0	1344	79	0.8098828	0.048065543	0.8098828	328.86618	0	19.517792						455	10	4	NaN	NaN	NaN	0.55027	1	8509	8509		7.5404	1.45	1	54114	+		19409	12005	11098	11444	15445	15445					-0.050156397393152474
PDSAVALGIF	10	Unmodified	_PDSAVALGIF_					0	0	0			REV__ENSG00000168412|ENST00000307161|MTNR1A	REV__ENSG00000168412|ENST00000307161|MTNR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2687500029	2	495.26875	988.522947	1.5619	0.00077354	-0.82451	-0.00040835	0.73735	0.00036519	495.26830854283645	27.664	0.072372	27.664	27.639	27.712	0	1311	67	0.83019954	0.04060048	0.83019954	337.1621	0	16.488708						150	4	3	NaN	NaN	NaN	0.56921	1	8165	8165		16.584	1.4088	1	18572	+		19410	10511	11099	11445	15446	15446					0.02822651694657452
PDSAVSVR	8	Unmodified	_PDSAVSVR_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.4366575050001	1	830.436658	829.429381	1.6104	0.0013373	-5.0177	-0.0041669	-3.4073	-0.0028296	830.4328798373662	24.213	0.072453	24.213	24.164	24.237	0	462	43	1.3447032	0.025071263	1.3447032	273.77963	0	5.1044617						80	4	2	NaN	NaN	NaN	0.78264	1	5129	5129		11.548	0.94349	1	5699.4	+		19411	9575	11100	11446	15447	15447					0.007843523122346596
PDSLFQLL	8	Unmodified	_PDSLFQLL_					0	0	0			REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF	REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5087598156	1	932.50876	931.501483	1.2647	0.0011793	0.76188	0.00071046	2.0266	0.0018898	932.5089608347787	30.753	0.16893	30.753	30.656	30.825	0	273	73	1.4571344	0.042710304	1.4571344	296.1401	0	8.680206						169	8	2	NaN	NaN	NaN	0.57691	1	6639	6639		26.732	1.7706	1	11301	+		19412	11474	11101	11447	15448	15448					0.032992666659424685
PDSSAGPP	8	Unmodified	_PDSSAGPP_					0	0	0			REV__ENST00000535313.1_1_12:7309311-7310674:+|nuORF	REV__ENST00000535313.1_1_12:7309311-7310674:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3257100721	1	727.32571	726.318434	-0.37279	-0.00027114	-0.49911	-0.00036302	-0.87191	-0.00063416	727.3261135790503	55.626	0.12013	55.626	55.554	55.674	-0.00059128	519	61	1.310647	0.035900235	1.3091276	267.46234	0	7.326111						136	6	2	NaN	NaN	NaN	0.84692	1	3621	3621		1.4396	0	1	11646	+		19413	9756	11102	11448	15449	15449					-0.05567287395854237
PDTMQFHWDRF	11	Unmodified	_PDTMQFHWDRF_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000555301.1_1_14:21862382-21863168:-|nuORF	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.3273359018	2	740.327336	1478.64012	0.83204	0.00061598	-4.6597	-0.0034497	-3.8277	-0.0028337	740.825472517142	31.548	0.19308	31.544	31.495	31.688	-0.0044174	1053	64	0.9882094	0.038407207	0.98669	399.50235	0	15.526825						222	9	3	NaN	NaN	NaN	0.66717	1	19509	19509		9.6116	0	1	27403			19414	107	11103	11449	15450	15450					-0.08005558428044424
PDVDLLLR	8	Unmodified	_PDVDLLLR_					0	0	0		ENST00000495397.1_1_1:161696362-161697449:+|nuORF;ENSG00000162746|ENST00000367948|FCRLB	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.77674221050006	2	470.776742	939.538931	-1.1905	-0.00056046	-6.9301	-0.0032626	-8.1206	-0.003823	470.77289763948767	56.587	0.14378	56.586	56.538	56.682	-0.00056458	1335	31	0.8154261	0.018474758	0.81390667	331.39917	0	7.508362						72	7	2	NaN	NaN	NaN	0.83211	1	6680	6680		4.9097	1.3365	1	5592.1			19415	4172	11104	11450	15451	15451					0.06674357931581198
PDVERFDEV	9	Unmodified	_PDVERFDEV_					0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2616532523	2	553.261653	1104.50875	1.0928	0.00060458	8.172	0.0045212	9.2647	0.0051258	553.2663096687767	30.92	0.14484	30.915	30.843	30.988	-0.0050716	1248	79	0.8689189	0.047863185	0.86739945	352.3778	0	19.410248						212	7	3	NaN	NaN	NaN	0.49672	1	12686	12686		9.746	2.8828	1	23511	+		19416	9712	11105	11451	15452	15452					-0.039320455242886965
PDVERFDEV	9	Unmodified						0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.261653	1104.50875	0.64624	0.00035754	9.9046	0.0054798	10.551	0.0058374	553.2669622798082	30.922	0.096493	30.922	30.873	30.97	0	1251	73	0.8670771	0.044186175	0.8670771	351.6309		17.919067	0.0030598	0.0012594	-0.00016117	NaN	9.746	157	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18830	+		19417	9712	11105	11451							-0.039320455242886965
PDVERFDEV	9	Unmodified						0	0	0			REV__nc|ENSG00000138079|Q07837-5|SLC3A1	REV__nc|ENSG00000138079|Q07837-5|SLC3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.261653	1104.50875	1.0928	0.00060458	8.172	0.0045212	9.2647	0.0051258	553.2663096687767	30.92	0.14484	30.915	30.843	30.988	-0.0050716	1248	79	0.8689189	0.047863185	0.86739945	352.3778		19.410248	-0.0030598	-0.00065779	0.00016117	NaN	9.746	212	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23511	+		19418	9712	11105	11451							-0.039320455242886965
PDVINGSP	8	Unmodified	_PDVINGSP_					0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.3992093662001	1	798.399209	797.391933	1.8373	0.0014669	4.9513	0.0039531	6.7886	0.00542	798.4030406538797	28.629	0.14478	28.629	28.581	28.725	0	468	52	1.3411216	0.030442119	1.3411216	273.22906	0	6.201996						116	7	2	NaN	NaN	NaN	0.77489	1	4722	4722		12.588	1.0394	1	10142			19419	291	11106	11452	15453	15453					-0.014867389533719688
PDVNILVL	8	Unmodified	_PDVNILVL_					0	0	0			REV__nc|ENSG00000101079|Q9UGV2-3|NDRG3	REV__nc|ENSG00000101079|Q9UGV2-3|NDRG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	882.5294952577	1	882.529495	881.522219	2.3079	0.0020368	0.16167	0.00014268	2.4696	0.0021795	882.5289677087605	31.234	0.45851	31.229	31.157	31.615	-0.0050716	336	319	1.419741	0.18954384	1.4182216	288.77866	0	38.55365						2130	20	5	NaN	NaN	NaN	0.12876	1	5707	5707		58.599	0.36367	1	3140400	+		19420	8843	11107	11453	15454	15454					0.07671857045602337
PDWLHKKL	8	Unmodified	_PDWLHKKL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.593826849	1	1036.59383	1035.58655	0.77409	0.00080241	8.3681	0.0086743	9.1422	0.0094768	1036.6036905770293	31.356	0.12066	31.356	31.308	31.428	0	162	43	1.5228153	0.02480352	1.5228153	309.03522	0	5.033539						109	6	2	NaN	NaN	NaN	0.8439	1	10028	10028		3.1533	0.69183	1	7843.8			19421	5060	11108	11454	15455	15455					0.07018056922402138
PEAAGPEL	8	Unmodified	_PEAAGPEL_					0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3883103289	1	783.38831	782.381034	1.9707	0.0015438	4.6162	0.0036163	6.5868	0.0051601	783.3918370589236	24.816	0.26546	24.816	24.743	25.009	0	477	133	1.3357477	0.078921676	1.3357477	272.22263	0	16.084076						678	12	4	NaN	NaN	NaN	0.30832	1	4523	4523		41.46	7.7618	1	151480	+		19422	10370	11109	11455	15456	15456					-0.01886141327668156
PEAAGPEL	8	Unmodified	_PEAAGPEL_					0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.3883103289	1	783.38831	782.381034	1.7755	0.0013909	5.1473	0.0040323	6.9228	0.0054232	783.3922620637105	24.815	0.31362	24.803	24.731	25.044	-0.012394	477	157	1.3357477	0.09331095	1.3342283	272.22263	0	19.016571						662	14	4	NaN	NaN	NaN	0.30832	1	4439	4439		41.46	5.4237	1	142840	+		19423	10370	11109	11455	15457	15457					-0.01886141327668156
PEAAGPEL	8	Unmodified						0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.38831	782.381034	1.9707	0.0015438	4.6162	0.0036163	6.5868	0.0051601	783.3918370589236	24.816	0.26546	24.816	24.743	25.009	0	477	133	1.3357477	0.078921676	1.3357477	272.22263		16.084076	0.0062768	-0.00023157	0.00075972	NaN	41.46	678	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151480	+		19424	10370	11109	11455							-0.01886141327668156
PEAAGPEL	8	Unmodified						0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.38831	782.381034	1.7755	0.0013909	5.1473	0.0040323	6.9228	0.0054232	783.3922620637105	24.815	0.31362	24.803	24.731	25.044	-0.012394	477	157	1.3357477	0.09331095	1.3342283	272.22263		19.016571	-0.0062768	0.00018445	-0.00075972	NaN	41.46	662	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142840	+		19425	10370	11109	11455							-0.01886141327668156
PEAAPGGA	8	Unmodified	_PEAAPGGA_					0	0	0			REV__ENST00000434425.5_1_13:34392323-34395282:+|nuORF	REV__ENST00000434425.5_1_13:34392323-34395282:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515003	2	335.163754	668.312954	1.4269	0.00047825	5.2565	0.0017618	6.6834	0.00224	335.16552667782156	48.137	0.047962	48.143	48.143	48.191	0.0060997	1533	22	0.6930556	0.013025939	0.6915362	283.3079	0	5.3247375						28	3	2	NaN	NaN	NaN	0.84876	1	2451	2451		0.39566	0	1	1639.5	+		19426	12165	11110	11456	15458	15458					-0.034469661876528335
PEAELQKCSVL	11	Unmodified	_PEAELQKCSVL_					0	0	0		ENST00000485332.7_1_X:221743-228403:-|nuORF;ENSG00000178605|ENST00000326153|GTPBP6	ENST00000485332.7_1_X:221743-228403:-|nuORF	ENST00000485332.7_1_X:221743-228403:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.21291773736664	3	406.212918	1215.61692	1.139	0.00046269	0.59896	0.00024331	1.738	0.000706	406.5466115037506	20.983	0.07214	20.983	20.959	21.031	0	1434	28	0.75435036	0.016687691	0.75435036	458.3528	0	10.139679						47	4	2	NaN	NaN	NaN	0.76488	1	16876	16876		0.9877	0	1	3956.4			19427	5116	11111	11457	15459	15459					0.01774002734646274
PEAGGGVAI	9	Unmodified	_PEAGGGVAI_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4042947441	1	770.404295	769.397018	1.8392	0.0014169	5.3487	0.0041206	7.1879	0.0055376	770.4082803888366	27.012	0.31367	27.012	26.964	27.277	0	492	178	1.3267875	0.10595679	1.3267875	270.4752	0	21.600067						909	14	4	NaN	NaN	NaN	0.3389	1	4349	4349		16.417	0	1	310710			19428	5910	11112	11458	15460	15460					0.0030956490923017554
PEAGGGVAI	9	Unmodified	_PEAGGGVAI_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4042947441	1	770.404295	769.397018	1.7839	0.0013743	4.25	0.0032742	6.0339	0.0046485	770.4076315404615	27.035	0.26549	27.025	26.977	27.242	-0.010124	489	175	1.3285799	0.104144216	1.3270605	270.8406	0	21.23056						902	12	4	NaN	NaN	NaN	0.3389	1	4275	4275		16.417	0	1	308330			19429	5910	11112	11458	15461	15461					0.0030956490923017554
PEAGPGKA	8	Unmodified	_PEAGPGKA_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3780799936001	1	726.37808	725.370804	0.824	0.00059854	5.3987	0.0039215	6.2227	0.0045201	726.3823402081114	32.997	0.16896	32.997	32.949	33.118	0	594	46	1.265731	0.026987076	1.265731	258.3026	0	5.50737						112	8	2	NaN	NaN	NaN	0.8439	1	3693	3693		3.1533	1.7138	1	9654.8	+		19430	8784	11113	11459	15462	15462					-0.0028670426223698087
PEAGPGKA	8	Unmodified	_PEAGPGKA_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3780799936001	1	726.37808	725.370804	0.99732	0.00072443	5.0353	0.0036575	6.0326	0.004382	726.3813134732331	32.586	0.19308	32.583	32.51	32.703	-0.0031052	600	94	1.2621325	0.05581498	1.2606131	257.56824	0	11.390381						345	9	3	NaN	NaN	NaN	0.80071	1	3611	3611		9.1232	0	1	64193	+		19431	8784	11113	11459	15463	15463					-0.0028670426223698087
PEAGPGKA	8	Unmodified						0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	726.37808	725.370804	0.824	0.00059854	5.3987	0.0039215	6.2227	0.0045201	726.3823402081114	32.997	0.16896	32.997	32.949	33.118	0	594	46	1.265731	0.026987076	1.265731	258.3026		5.50737	0.0018039	0.00026352	-0.00013975	NaN	3.1533	112	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9654.8	+		19432	8784	11113	11459							-0.0028670426223698087
PEAGPGKA	8	Unmodified						0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.37808	725.370804	1.1029	0.00080113	4.3658	0.0031712	5.4687	0.0039723	726.3813269461281	32.996	0.12054	32.993	32.969	33.09	-0.0024757	591	55	1.26753	0.03238964	1.2660105	258.6697		6.609894	-0.0018039	-0.0004868	0.00013975	NaN	3.1533	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9030	+		19433	8784	11113	11459							-0.0028670426223698087
PEAGSVAPL	9	Unmodified	_PEAGSVAPL_					0	0	0		ENST00000413620.5_1_X:153775652-153780249:+|nuORF	ENST00000413620.5_1_X:153775652-153780249:+|nuORF	ENST00000413620.5_1_X:153775652-153780249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.4461595588001	1	840.44616	839.438883	1.7932	0.0015071	0.079883	6.7137E-05	1.8731	0.0015742	840.4465135454174	22.163	0.072386	22.163	22.139	22.212	0	522	85	1.3088527	0.050212145	1.3088527	266.4287	0	10.22113						179	4	2	NaN	NaN	NaN	0.20577	1	5266	5266		24.961	0	1	18757			19434	6874	11114	11460	15464	15464					0.01274120597770434
PEALAGLPAL	10	Unmodified	_PEALAGLPAL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.5509589812999	1	951.550959	950.543683	1.9809	0.0018849	-0.30345	-0.00028874	1.6774	0.0015962	951.5500944268772	26.287	0.072367	26.276	26.276	26.349	-0.011137	285	55	1.4500183	0.03203273	1.4484988	294.60785	0	6.5082703						78	4	2	NaN	NaN	NaN	0.60686	1	6972	6972		14.425	0.96197	1	6787.3			19435	1241	11115	11461	15465	15465					0.06643242074312639
PEALAGLPAL	10	Unmodified						0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	951.550959	950.543683	2.0977	0.0019961	-0.96747	-0.0009206	1.1302	0.0010755	951.5494130118375	26.288	0.072424	26.288	26.263	26.336	0	291	55	1.446459	0.03203273	1.446459	293.8847		6.5082397	0.005678	-0.00029818	-0.0010199	NaN	14.425	84	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7547.5			19436	1241	11115	11461							0.06643242074312639
PEASFPGLPK	10	Unmodified	_PEASFPGLPK_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5567726406998	1	1042.55677	1041.5495	2.4411	0.0025449	0.72076	0.00075143	3.1618	0.0032964	1043.5605869914593	25.708	0.12061	25.696	25.6	25.721	-0.0116	144	43	1.533442	0.024790406	1.5319226	311.16837	0	5.0305176						67	6	2	NaN	NaN	NaN	0.77421	1	10078	10078		1.9246	0	1	4809.9			19437	6163	11116	11462	15466	15466					0.030383405859765844
PECCADDS	8	Unmodified	_PECCADDS_					0	0	0			REV__HNF1B|p.S224C|1|0.2|ENSG00000275410|chr17:37733695-37733695|G/C|missense_variant	REV__HNF1B|p.S224C|1|0.2|ENSG00000275410|chr17:37733695-37733695|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.13093589249996	2	420.130936	838.247319	0.89199	0.00037475	-0.55673	-0.0002339	0.33525	0.00014085	420.1310387606067	31.258	0.096556	31.253	31.229	31.326	-0.0050716	1455	40	0.7413668	0.024120152	0.73984736	301.8248	0	9.819794						70	5	2	NaN	NaN	NaN	0.8439	1	5109	5109		3.1533	0	1	7227.4	+		19438	13019	11117	11463	15467	15467					-0.17827491487184943
PECCADDS	8	Unmodified						0	0	0			REV__HNF1B|p.S224C|1|0.2|ENSG00000275410|chr17:37733695-37733695|G/C|missense_variant	REV__HNF1B|p.S224C|1|0.2|ENSG00000275410|chr17:37733695-37733695|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	420.130936	838.247319	0.89199	0.00037475	-0.55673	-0.0002339	0.33525	0.00014085	420.1310387606067	31.258	0.096556	31.253	31.229	31.326	-0.0050716	1455	40	0.7413668	0.024120152	0.73984736	301.8248		9.819794	-0.015114	0.00025067	-0.00075972	NaN	3.1533	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7227.4	+		19439	13019	11117	11463							-0.17827491487184943
PECNGFPTKRV	11	Unmodified	_PECNGFPTKRV_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.3136972103	2	624.313697	1246.61284	1.8146	0.0011329	6.6188	0.0041322	8.4335	0.0052651	624.3180122092452	30.029	0.19312	30.029	29.956	30.149	0	1125	91	0.9442611	0.05496502	0.9442611	382.39337	0	22.258972						198	9	2	NaN	NaN	NaN	0.63477	1	17688	17688		11.739	2.1272	1	33312			19440	4304	11118	11464	15468	15468					-0.0006004196843605314
PEDALSQG	8	Unmodified	_PEDALSQG_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	816.3733885462002	1	816.373389	815.366112	1.5793	0.0012893	8.1501	0.0066535	9.7294	0.0079428	816.3806741361361	32.852	0.12067	32.852	32.804	32.925	0	495	43	1.3249949	0.025100708	1.3249949	269.8428	0	5.111908						105	6	2	NaN	NaN	NaN	0.82797	1	4957	4957		5.4659	0	1	7022.2			19441	364	11119	11465	15469	15469					-0.048956331956446775
PEDNSLPLI	9	Unmodified	_PEDNSLPLI_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5200527834	1	997.520053	996.512776	1.646	0.0016419	-0.30897	-0.0003082	1.337	0.0013337	997.5193765721491	24.478	0.16891	24.465	24.417	24.586	-0.012747	255	49	1.4678029	0.028440237	1.4662834	298.02466	0	5.774536						144	8	3	NaN	NaN	NaN	0.2961	1	8274	8274		19.164	7.9933	1	8794.5			19442	1872	11120	11466	15470	15470					0.014380439694264169
PEDTAGSR	8	Unmodified	_PEDTAGSR_					0	0	0		ENSG00000166246|ENST00000299320|DNAAF8	ENSG00000166246|ENST00000299320|DNAAF8	ENSG00000166246|ENST00000299320|DNAAF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.3795365566001	1	832.379537	831.37226	1.2024	0.0010009	-4.1453	-0.0034505	-2.9429	-0.0024496	832.3753668150061	27.542	0.12067	27.533	27.484	27.605	-0.0095501	498	49	1.3232021	0.028686523	1.3216827	269.39175	0	5.8403015						102	6	2	NaN	NaN	NaN	0.82332	1	5030	5030		6.0903	0	1	7152.3			19443	4461	11121	11467	15471	15471					-0.05017114964130087
PEDTAGSR	8	Unmodified						0	0	0		ENSG00000166246|ENST00000299320|DNAAF8	ENSG00000166246|ENST00000299320|DNAAF8	ENSG00000166246|ENST00000299320|DNAAF8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.379537	831.37226	1.6512	0.0013744	-4.6038	-0.0038321	-2.9526	-0.0024577	832.3769511692199	27.519	0.12069	27.519	27.495	27.615	0	501	49	1.3214091	0.028689504	1.3214091	269.02673		5.8409424	-0.0068899	-0.00021327	-0.00013678	NaN	6.0903	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6333.9			19444	4461	11121	11467							-0.05017114964130087
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.25564262765005	2	467.255643	932.496732	1.0091	0.00047152	-2.7865	-0.001302	-1.7774	-0.00083051	467.25447279908013	20.309	0.12021	20.309	20.261	20.381	0	1353	46	0.8043377	0.027728617	0.8043377	326.92825	0	11.270477						113	6	3	NaN	NaN	NaN	0.81251	1	6665	6665		7.5404	2.6306	1	11699			19445	841	11122	11468	15472	15472					0.027783825231949777
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.5040087887002	1	933.504009	932.496732	1.6922	0.0015797	-0.25547	-0.00023848	1.4368	0.0013412	933.5041272927233	20.309	0.072132	20.309	20.285	20.357	0	312	43	1.433996	0.024932861	1.433996	291.43304	0	5.0671387						79	4	3	NaN	NaN	NaN	0.65075	1	6666	6666		22.126	11.521	1	4506.7			19446	841	11122	11468	15473	15473					0.027783825231949777
PEEHPVLL	8	Unmodified	_PEEHPVLL_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.25564262765005	2	467.255643	932.496732	0.56623	0.00026458	-0.48059	-0.00022456	0.085639	4.0015E-05	467.25550342709784	20.333	0.1204	20.319	20.271	20.391	-0.014141	1356	49	0.8024889	0.029575586	0.8009695	326.17682	0	12.02121						109	6	2	NaN	NaN	NaN	0.19946	1	6526	6526		50.033	26.182	1	12624			19447	841	11122	11468	15474	15474					0.027783825231949777
PEEKEEGELI	10	Unmodified	_PEEKEEGELI_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.7877008273001	2	586.787701	1171.56085	2.398	0.0014071	4.0123	0.0023544	6.4103	0.0037615	586.7900403665426	25.467	0.19304	25.467	25.371	25.564	0	1188	85	0.90571284	0.05148375	0.90571284	367.03992	0	20.86377						520	9	4	NaN	NaN	NaN	0.19179	1	15538	15538		36.235	5.6247	1	187970			19448	5421	11123	11469	15475	15475					-0.018069269011675715
PEEPNDERPLQ	11	Unmodified	_PEEPNDERPLQ_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.8773626432667	3	441.877363	1322.61026	1.5206	0.00067194	0.47708	0.00021081	1.9977	0.00088275	442.21231836592335	25.346	0.096518	25.334	25.286	25.382	-0.012011	1440	79	0.7506418	0.048243046	0.7491224	455.68564	0	29.286499						139	5	3	NaN	NaN	NaN	0.76304	1	18285	18285		1.1021	0.21744	1	12713	+		19449	11095	11124	11470	15476	15476					-0.0381421889237572
PEESLGQEL	9	Unmodified	_PEESLGQEL_					0	0	0			REV__HCRTR1|p.G274E|1|0.57|ENSG00000121764|chr1:31623605-31623605|G/A|missense_variant	REV__HCRTR1|p.G274E|1|0.57|ENSG00000121764|chr1:31623605-31623605|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2429291829	2	501.242929	1000.47131	1.2042	0.00060361	-1.6552	-0.00082964	-0.45095	-0.00022603	501.2421149573496	22.091	0.14453	22.077	22.005	22.149	-0.013731	1314	82	0.8283535	0.049868286	0.8268341	336.35727	0	20.249298						347	7	4	NaN	NaN	NaN	0.04947	1	8429	8429		47.136	5.3513	1	107780	+		19450	13006	11125	11471	15477	15477					-0.028911367898899698
PEESLGQEL	9	Unmodified						0	0	0			REV__HCRTR1|p.G274E|1|0.57|ENSG00000121764|chr1:31623605-31623605|G/A|missense_variant	REV__HCRTR1|p.G274E|1|0.57|ENSG00000121764|chr1:31623605-31623605|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.242929	1000.47131	1.2042	0.00060361	-1.6552	-0.00082964	-0.45095	-0.00022603	501.2421149573496	22.091	0.14453	22.077	22.005	22.149	-0.013731	1314	82	0.8283535	0.049868286	0.8268341	336.35727		20.249298	-0.0070468	0.00027719	-0.0016827	NaN	47.136	347	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107780	+		19451	13006	11125	11471							-0.028911367898899698
PEFEAILDT	9	Unmodified	_PEFEAILDT_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5040683681998	1	1034.50407	1033.49679	1.8572	0.0019213	3.4588	0.0035781	5.316	0.0054994	1034.5074446614985	28.146	0.21719	28.146	28.074	28.291	0	168	97	1.5192716	0.056735873	1.5192716	308.32428	0	11.514099						241	10	2	NaN	NaN	NaN	0.47587	1	9917	9917		10.605	0	1	23787			19452	5722	11126	11472	15478	15478					-0.018616622674926475
PEFPGGHI	8	Unmodified	_PEFPGGHI_					0	0	0		ENST00000554546.5_1_14:73742736-73742850:-|nuORF	ENST00000554546.5_1_14:73742736-73742850:-|nuORF	ENST00000554546.5_1_14:73742736-73742850:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.21377781295	2	427.213778	852.413003	2.1363	0.00091268	-4.1968	-0.0017929	-2.0604	-0.00088024	427.2118383903883	13.709	0.072137	13.709	13.685	13.757	0	1509	31	0.70793515	0.018593311	0.70793515	288.13702	0	7.5676575						47	4	2	NaN	NaN	NaN	0.79379	1	5414	5414		10.052	0.30557	1	4164.4			19453	7565	11127	11473	15479	15479					-0.01910728853852106
PEGDLGAP	8	Unmodified	_PEGDLGAP_					0	0	0		ENST00000540249.5_1_X:19362058-19367455:+|nuORF;ENST00000417819.5_1_X:19362058-19363912:+|nuORF;ENST00000379806.9_1_X:19362058-19364728:+|nuORF	ENST00000540249.5_1_X:19362058-19367455:+|nuORF	ENST00000540249.5_1_X:19362058-19367455:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3570102005	1	755.35701	754.349734	1.6604	0.0012542	5.4685	0.0041306	7.1288	0.0053848	755.3605041940725	24.381	0.2896	24.368	24.296	24.586	-0.012749	588	103	1.2693287	0.061187148	1.2678093	258.8522	0	12.477798						448	13	3	NaN	NaN	NaN	0.62311	1	4061	4061		23.85	1.7241	1	92405			19454	6726	11128	11474	15480	15480					-0.03726714361766881
PEGDLGAP	8	Unmodified						0	0	0		ENST00000540249.5_1_X:19362058-19367455:+|nuORF;ENST00000417819.5_1_X:19362058-19363912:+|nuORF;ENST00000379806.9_1_X:19362058-19364728:+|nuORF	ENST00000540249.5_1_X:19362058-19367455:+|nuORF	ENST00000540249.5_1_X:19362058-19367455:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.35701	754.349734	1.4398	0.0010876	5.6397	0.00426	7.0795	0.0053476	755.3610845993858	24.381	0.38592	24.381	24.309	24.695	0	588	91	1.2693287	0.05397713	1.2693287	258.8522		11.007462	0.0064931	4.9739E-05	0.00075972	NaN	23.85	481	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97450			19455	6726	11128	11474							-0.03726714361766881
PEGGAPVP	8	Unmodified	_PEGGAPVP_					0	0	0		ENST00000338369.6_1_11:65655881-65655995:-|nuORF	ENST00000338369.6_1_11:65655881-65655995:-|nuORF	ENST00000338369.6_1_11:65655881-65655995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3671809563001	1	723.367181	722.359904	0.76516	0.00055349	6.0534	0.0043788	6.8186	0.0049323	723.3716210205711	30.994	0.2172	30.994	30.897	31.115	0	639	115	1.2387238	0.06846595	1.2387238	252.81065	0	13.973206						379	10	2	NaN	NaN	NaN	0.78605	1	3641	3641		11.091	1.0391	1	42191			19456	6535	11129	11475	15481	15481					-0.012381066365151128
PEGGDCPG	8	Unmodified	_PEGGDCPG_					0	0	0		ENST00000407714.1_1_2:241564763-241570253:+|nuORF	ENST00000407714.1_1_2:241564763-241570253:+|nuORF	ENST00000407714.1_1_2:241564763-241570253:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.2664806337001	1	731.266481	730.259204	1.8833	0.0013772	-1.8518	-0.0013541	0.031582	2.3095E-05	731.2640233774032	26.119	0.048285	26.119	26.094	26.143	0	684	73	1.2116731	0.04331112	1.2116731	247.24014	0	8.83757						83	3	2	NaN	NaN	NaN	0.84887	1	3755	3755		0.32989	0	1	6742.7			19457	6851	11130	11476	15482	15482					-0.11671506681682331
PEGGGGAS	8	Unmodified	_PEGGGGAS_					0	0	0			REV__ENSG00000107890|ENST00000376087|ANKRD26	REV__ENSG00000107890|ENST00000376087|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.2681951932001	1	631.268195	630.260919	1.213	0.0007657	8.1461	0.0051424	9.359	0.0059081	631.2744325677996	37.145	0.072388	37.145	37.097	37.169	0	1149	49	0.92958635	0.02937162	0.92958635	190.23418	0	6.010727						72	4	2	NaN	NaN	NaN	0.84727	1	1453	1453		1.2418	0	1	5152.2	+		19458	9023	11131	11477	15483	15483					-0.06900129601422123
PEGHVEMSRD	10	Unmodified	_PEGHVEMSRD_					0	0	0		ENST00000376561.7_1_11:70281793-70282567:+|nuORF	ENST00000376561.7_1_11:70281793-70282567:+|nuORF	ENST00000376561.7_1_11:70281793-70282567:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.75621212115	2	578.756212	1155.49787	2.109	0.0012206	-11.244	-0.0065078	-9.1353	-0.0052871	578.7497095195264	18.844	0.14401	18.844	18.772	18.916	0	1215	34	0.8891654	0.020235598	0.8891654	360.39243	0	8.201813						123	7	3	NaN	NaN	NaN	0.66626	1	14994	14994		10.36	2.8198	1	10442			19459	6701	11132	11478	15484	15484					-0.07365771170225344
PEIDDSEFCI	10	Unmodified	_PEIDDSEFCI_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2473542463001	2	584.247354	1166.48016	1.2704	0.00074222	-5.811	-0.003395	-4.5406	-0.0026528	584.244544761575	35.818	0.28928	35.819	35.746	36.036	0.00052643	1200	94	0.89836043	0.056990623	0.896841	364.07886	0	23.096619						585	12	4	NaN	NaN	NaN	0.29898	1	14809	14809		27.789	5.6625	1	133730			19460	2583	11133	11479	15485	15485					-0.09642531215718009
PEIFNMKL	8	Unmodified	_PEIFNMKL_					0	0	0		nc|ENSG00000148288|Q8N5D6-2|GBGT1;ENSG00000148288|ENST00000372040|GBGT1	nc|ENSG00000148288|Q8N5D6-2|GBGT1	nc|ENSG00000148288|Q8N5D6-2|GBGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.26769575790007	2	496.267696	990.520839	0.79091	0.0003925	9.1246	0.0045282	9.9155	0.0049207	496.271342824709	20.646	0.21689	20.632	20.511	20.728	-0.014086	1545	58	0.68561107	0.035363793	0.6840916	278.43384	0	14.361603						299	10	4	NaN	NaN	NaN	0.72013	1	8069	8069		17.799	0.94067	1	38756			19461	3623	11134	11480	15486	15486					0.02519899685216842
PEIKKGSYNN	10	Unmodified	_PEIKKGSYNN_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2985700748502	2	575.29857	1148.58259	1.9344	0.0011129	-6.2154	-0.0035757	-4.281	-0.0024629	575.7950382273978	18.194	0.14392	18.18	18.156	18.3	-0.01395	1203	43	0.8965218	0.025736272	0.89500237	363.39987	0	10.432068						87	7	2	NaN	NaN	NaN	0.74182	1	14260	14260		5.1889	1.2204	1	12406			19462	5641	11135	11481	15487	15487					0.014239226380823311
PEILYPALPM	10	Unmodified	_PEILYPALPM_					0	0	0		PCDHGA12|p.T569M|1|0.69|ENSG00000253159|chr5:141432465-141432465|C/T|missense_variant	PCDHGA12|p.T569M|1|0.69|ENSG00000253159|chr5:141432465-141432465|C/T|missense_variant	PCDHGA12|p.T569M|1|0.69|ENSG00000253159|chr5:141432465-141432465|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.8754658706	3	381.875466	1142.60457	1.4916	0.00056962	4.1322	0.001578	5.6238	0.0021476	381.8771885988016	14.285	0.14411	14.285	14.261	14.405	0	1494	40	0.7172283	0.024151623	0.7172283	436.1089	0	14.685333						86	7	2	NaN	NaN	NaN	0.75966	1	14556	14556		3.261	0.29093	1	7227.8			19463	8091	11136	11482	15488	15488					0.03897011062258571
PEINPILIL	9	Unmodified	_PEINPILIL_					0	0	0		ENST00000431842.6_2_3:56680906-56681017:-|nuORF	ENST00000431842.6_2_3:56680906-56681017:-|nuORF	ENST00000431842.6_2_3:56680906-56681017:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.6292093023002	1	1021.62921	1020.62193	1.2109	0.0012371	-0.1975	-0.00020177	1.0134	0.0010353	1021.628378806333	32.489	0.12066	32.486	32.462	32.583	-0.0031013	183	61	1.510409	0.035459995	1.5088896	306.5766	0	7.19751						186	6	3	NaN	NaN	NaN	0.019103	1	9225	9225		73.133	3.3508	1	34752			19464	6973	11137	11483	15489	15489					0.11244674659576503
PEIVQTTQM	9	Unmodified	_PEIVQTTQM_					0	0	0			REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF	REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.76297452075	2	523.762975	1045.5114	0.98239	0.00051454	8.475	0.0044389	9.4574	0.0049535	523.7665748836489	20.694	0.19287	20.68	20.608	20.801	-0.014088	1317	91	0.8265074	0.05532837	0.82498795	335.4114	0	22.453247						316	9	3	NaN	NaN	NaN	0.51576	1	10234	10234		8.962	0	1	27309	+		19465	10358	11138	11484	15490	15490					-0.009539133909811426
PEIVQTTQM	9	Unmodified						0	0	0			REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF	REV__ENST00000521080.5_1_8:95511544-95524374:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.762975	1045.5114	0.98239	0.00051454	8.475	0.0044389	9.4574	0.0049535	523.7665748836489	20.694	0.19287	20.68	20.608	20.801	-0.014088	1317	91	0.8265074	0.05532837	0.82498795	335.4114		22.453247	-0.0068653	0.00058986	-0.01183	NaN	8.962	316	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27309	+		19466	10358	11138	11484							-0.009539133909811426
PEKFQHIL	8	Unmodified	_PEKFQHIL_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.2847344181001	2	506.284734	1010.55492	1.9011	0.00096251	-2.5909	-0.0013117	-0.6898	-0.00034923	506.2834494215209	19.924	0.12029	19.924	19.9	20.021	0	1461	46	0.7376554	0.027837038	0.7376554	299.48828	0	11.301849						167	6	3	NaN	NaN	NaN	0.45636	1	9006	9006		33.425	6.6938	1	32537			19467	6037	11139	11485	15491	15491					0.050060641684808616
PEKFQHIL	8	Unmodified	_PEKFQHIL_					0	0	0		ENSG00000231500|ENST00000439602|RPS18;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENSG00000231500|ENST00000439602|RPS18	ENSG00000231500|ENST00000439602|RPS18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.2847344181001	2	506.284734	1010.55492	1.2913	0.00065377	0.12249	6.2013E-05	1.4138	0.00071578	506.28518004946216	20.068	0.19255	20.054	19.982	20.174	-0.014141	1458	43	0.7395112	0.025979817	0.73799175	300.24173	0	10.547821						226	9	3	NaN	NaN	NaN	0.55996	1	8831	8831		27.789	5.9538	1	30804			19468	6037	11139	11485	15492	15492					0.050060641684808616
PEKVYRAA	8	Unmodified	_PEKVYRAA_					0	0	0		ENST00000511320.5_1_5:176409590-176433712:-|nuORF	ENST00000511320.5_1_5:176409590-176433712:-|nuORF	ENST00000511320.5_1_5:176409590-176433712:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.26125932179997	2	467.261259	932.507966	1.2487	0.00058348	-1.9247	-0.00089935	-0.67599	-0.00031586	467.26048292851203	15.942	0.095871	15.942	15.894	15.99	0	1458	46	0.7395112	0.027840078	0.7395112	300.57907	0	11.315796						90	5	3	NaN	NaN	NaN	0.80692	1	6667	6667		8.2903	0	1	6356			19469	7355	11140	11486	15493	15493					0.03901204617318399
PELELGRSSR	10	Unmodified	_PELELGRSSR_					0	0	0			REV__ENSG00000182871|ENST00000651438|COL18A1	REV__ENSG00000182871|ENST00000651438|COL18A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.30946911215	2	572.309469	1142.60439	1.0163	0.00058163	-7.4541	-0.0042661	-6.4378	-0.0036844	572.3049840947655	22.476	0.096445	22.462	22.438	22.535	-0.013733	1185	37	0.90755045	0.022050142	0.906031	367.89313	0	8.938477						95	5	3	NaN	NaN	NaN	0.66626	1	14073	14073		10.36	2.0699	1	12777	+		19470	10877	11141	11487	15494	15494					0.03878727386609171
PELFFNCI	8	Unmodified	_PELFFNCI_					0	0	0			REV__ENST00000485050.5_1_3:113805105-113805411:+|nuORF	REV__ENST00000485050.5_1_3:113805105-113805411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4702658193002	1	982.470266	981.462989	1.6005	0.0015725	-2.6057	-0.00256	-1.0051	-0.00098752	982.4680018930577	35.818	0.072296	35.819	35.794	35.867	0.00052643	210	43	1.4944444	0.024848342	1.4929249	303.4975	0	5.046295						82	4	2	NaN	NaN	NaN	0.69898	1	7755	7755		19.118	3.9429	1	5910.5	+		19471	12413	11142	11488	15495	15495					-0.028483622402063702
PELGAIMH	8	Unmodified	_PELGAIMH_					0	0	0		ENST00000493762.1_1_3:169650020-169650170:+|nuORF	ENST00000493762.1_1_3:169650020-169650170:+|nuORF	ENST00000493762.1_1_3:169650020-169650170:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.4393000419002	1	867.4393	866.432024	2.0667	0.0017928	-3.2523	-0.0028211	-1.1855	-0.0010284	867.4357290218427	25.419	0.072392	25.419	25.395	25.467	0	375	49	1.3965509	0.028564572	1.3965509	284.13776	0	5.8116455						71	4	2	NaN	NaN	NaN	0.76633	1	5619	5619		13.737	1.1492	1	4668.7			19472	7279	11143	11489	15496	15496					-0.006535155544497684
PELIQKDCE	9	Unmodified	_PELIQKDCE_					0	0	0		tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	tr|U7SJK1|U7SJK1_FUSNUlipid-A-disaccharidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02082PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.8427133767333	3	358.842713	1073.50631	1.2435	0.00044621	2.2564	0.00080969	3.4999	0.0012559	358.84363040801946	34.203	0.12059	34.203	34.155	34.276	0	1521	73	0.70049703	0.044614255	0.70049703	426.26163	0	27.148376						157	6	3	NaN	NaN	NaN	0.47587	1	11702	11702		6.4299	0	1	19968			19473	13748	11144	11490	15497	15497					-0.027502172536060243
PELIRQSWR	9	Unmodified	_PELIRQSWR_					0	0	0		ENSG00000165553|ENST00000298352|NGB	ENSG00000165553|ENST00000298352|NGB	ENSG00000165553|ENST00000298352|NGB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.83037172975	2	592.830372	1183.64619	0.76132	0.00045134	-9.5853	-0.0056824	-8.824	-0.0052311	592.8252024773941	41.017	0.09613	41.017	40.969	41.065	0	1164	34	0.9204082	0.020196259	0.9204082	372.95096	0	8.183563						72	5	2	NaN	NaN	NaN	0.49672	1	15975	15975		9.746	1.5012	1	5154.5			19474	4415	11145	11491	15498	15498					0.06171327865786225
PELIWRRRK	9	Unmodified	_PELIWRRRK_					0	0	0			REV__ENST00000465300.5_1_2:29237346-29245107:+|nuORF	REV__ENST00000465300.5_1_2:29237346-29245107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.383105792	2	627.383106	1252.75166	0.92368	0.0005795	-1.5234	-0.00095572	-0.59967	-0.00037623	627.3826802366497	39.574	0.19225	39.574	39.478	39.67	0	1203	91	0.8965218	0.05520886	0.8965218	363.04114	0	22.356506						396	9	4	NaN	NaN	NaN	0.67818	1	17853	17853		1.072	0.14616	1	88600	+		19475	12291	11146	11492	15499	15499					0.1353928878206716
PELIWRRRK	9	Unmodified						0	0	0			REV__ENST00000465300.5_1_2:29237346-29245107:+|nuORF	REV__ENST00000465300.5_1_2:29237346-29245107:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.383106	1252.75166	0.92368	0.0005795	-1.5234	-0.00095572	-0.59967	-0.00037623	627.3826802366497	39.574	0.19225	39.574	39.478	39.67	0	1203	91	0.8965218	0.05520886	0.8965218	363.04114		22.356506	0.022495	0.00011525	0.00075972	NaN	1.072	396	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88600	+		19476	12291	11146	11492							0.1353928878206716
PELPEEPGTQS	11	Unmodified	_PELPEEPGTQS_					0	0	0			REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.18742567670006	3	395.187426	1182.54045	1.6761	0.00066239	1.4784	0.00058424	3.1545	0.0012466	395.18865832421034	36.372	0.14444	36.374	36.326	36.47	0.0016747	1476	37	0.72837335	0.022285342	0.7268539	442.70755	0	13.545105						67	6	2	NaN	NaN	NaN	0.74794	1	15306	15306		1.6806	0.15496	1	7110.8	+		19477	8403	11147	11493	15500	15500					-0.043520975609681045
PELQHTPLYA	10	Unmodified	_PELQHTPLYA_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8034882772502	2	584.803488	1167.59242	1.6006	0.00093603	2.2641	0.0013241	3.8647	0.0022601	584.8050426863402	30.727	0.28956	30.722	30.649	30.939	-0.0057545	1191	103	0.90387505	0.06243503	0.9023556	366.30966	0	25.302795						501	13	2	NaN	NaN	NaN	0.10581	1	14868	14868		45.165	0	1	302720			19478	6024	11148	11494	15501	15501					0.015331106434359754
PELQHTPLYA	10	Unmodified						0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.803488	1167.59242	1.819	0.0010638	2.1849	0.0012777	4.0039	0.0023415	584.8052777887711	30.728	0.2172	30.728	30.632	30.849	0	1194	103	0.902037	0.062441766	0.902037	365.56476		25.305511	0.0034022	-3.9728E-05	-0.00015929	NaN	45.165	492	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298140			19479	6024	11148	11494							0.015331106434359754
PELQPAAFV	9	Unmodified	_PELQPAAFV_					0	0	0		ENST00000491010.2_1_11:124501900-124502131:+|nuORF;nc|ENSG00000154144|Q3YBR2-3|TBRG1;ENST00000438907.3_1_11:124496635-124502131:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1;ENSG00000154144|ENST00000441174|TBRG1	ENST00000491010.2_1_11:124501900-124502131:+|nuORF	ENST00000491010.2_1_11:124501900-124502131:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.26346765975	2	486.263468	970.512382	2.1242	0.0010329	-0.90385	-0.00043951	1.2204	0.00059342	486.2630848833104	28.339	0.096504	28.339	28.291	28.388	0	1329	25	0.81912065	0.014778197	0.81912065	332.74747	0	6.0032654						46	5	2	NaN	NaN	NaN	0.53317	1	7621	7621		8.2448	1.4508	1	2493.3			19480	3830	11149	11495	15502	15502					0.025946690402406603
PELVEVIV	8	Unmodified	_PELVEVIV_					0	0	0			REV__ENST00000483350.1_1_3:50036895-50096022:+|nuORF	REV__ENST00000483350.1_1_3:50036895-50096022:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.5291609067001	1	897.529161	896.521884	1.5744	0.0014131	0.11223	0.00010073	1.6867	0.0015138	897.5299551271798	28.918	0.072426	28.909	28.885	28.958	-0.0083504	315	52	1.4322147	0.030286908	1.4306953	291.24094	0	6.158844						77	4	2	NaN	NaN	NaN	0.83211	1	5901	5901		4.9097	0	1	4972.3	+		19481	8352	11150	11496	15503	15503					0.06948437325763734
PEMILSMMDR	10	Unmodified	_PEMILSMMDR_					0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.78506940855	2	611.785069	1221.55559	1.1609	0.00071025	0.62494	0.00038233	1.7859	0.0010926	611.7859633667979	28.412	0.096512	28.412	28.339	28.436	0	1164	67	0.9204082	0.040394723	0.9204082	372.81754	0	16.362183						93	5	2	NaN	NaN	NaN	0.73444	1	17013	17013		5.6942	0	1	12949			19482	1403	11151	11497	15504	15504					-0.04632968560667905
PEMILSMMDR	10	Unmodified						0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.785069	1221.55559	0.65184	0.00039878	-3.2416	-0.0019832	-2.5898	-0.0015844	611.7821309177277	28.363	0.12067	28.354	28.305	28.426	-0.0089779	1164	64	0.9204082	0.03856486	0.91888875	372.81754		15.620972	-0.028966	-0.0023678	-0.00075972	NaN	5.6942	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14699			19483	1403	11151	11497							-0.04632968560667905
PENFPVSH	8	Unmodified	_PENFPVSH_					0	0	0		nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.4366575050001	1	926.436658	925.429381	0.75798	0.00070222	5.338	0.0049453	6.096	0.0056475	926.4416950722092	30.052	0.36197	30.045	29.876	30.238	-0.0064106	354	97	1.4090419	0.05706823	1.4075224	286.39337	0	11.599365						674	16	3	NaN	NaN	NaN	0.54116	1	6371	6371		28.896	8.3401	1	83702			19484	372	11152	11498	15505	15505					-0.03631647687757322
PENITKEQLLF	11	Unmodified	_PENITKEQLLF_					0	0	0			REV__ENST00000496593.5_1_11:61396376-61403672:+|nuORF	REV__ENST00000496593.5_1_11:61396376-61403672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3639099858501	2	666.36391	1330.71327	1.5804	0.0010531	-10.633	-0.0070852	-9.0523	-0.0060321	666.3570956817624	29.618	0.14482	29.618	29.57	29.715	0	1092	49	0.9644182	0.029302001	0.9644182	390.2859	0	11.858093						187	7	3	NaN	NaN	NaN	0.25335	1	19269	19269		27.296	4.1786	1	27498	+		19485	12501	11153	11499	15506	15506					0.06113893566248407
PENITKEQLLF	11	Unmodified						0	0	0			REV__ENST00000496593.5_1_11:61396376-61403672:+|nuORF	REV__ENST00000496593.5_1_11:61396376-61403672:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.36391	1330.71327	1.5804	0.0010531	-10.633	-0.0070852	-9.0523	-0.0060321	666.3570956817624	29.618	0.14482	29.618	29.57	29.715	0	1092	49	0.9644182	0.029302001	0.9644182	390.2859		11.858093	-0.04429	-0.00012856	-0.00015592	NaN	27.296	187	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27498	+		19486	12501	11153	11499							0.06113893566248407
PENRGAPLW	9	Unmodified	_PENRGAPLW_					0	0	0			REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2696156701501	2	520.269616	1038.52468	1.0913	0.00056778	-10.636	-0.0055335	-9.5445	-0.0049657	520.2639986681569	30.052	0.26545	30.045	29.925	30.19	-0.0064106	1281	85	0.84864825	0.0516119	0.8471288	344.42676	0	20.946838						317	12	2	NaN	NaN	NaN	0.23112	1	9932	9932		23.334	0.21685	1	63533	+		19487	11458	11154	11500	15507	15507					0.006957055032899007
PENRGAPLW	9	Unmodified						0	0	0			REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.269616	1038.52468	1.0913	0.00056778	-10.636	-0.0055335	-9.5445	-0.0049657	520.2639986681569	30.052	0.26545	30.045	29.925	30.19	-0.0064106	1281	85	0.84864825	0.0516119	0.8471288	344.42676		20.946838	0.0083986	-0.00015877	-0.00075972	NaN	23.334	317	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63533	+		19488	11458	11154	11500							0.006957055032899007
PEPASPQLL	9	Unmodified	_PEPASPQLL_					0	0	0		nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;ENST00000489540.1_1_6:30671361-30671724:-|nuORF	nc|ENSG00000137337|Q14676-3|MDC1	nc|ENSG00000137337|Q14676-3|MDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.2609249708	2	476.260925	950.507297	0.75515	0.00035965	-3.2581	-0.0015517	-2.5029	-0.001192	476.2593576383631	22.211	0.16886	22.197	22.149	22.318	-0.013731	1329	76	0.81912065	0.046174347	0.8176012	332.84528	0	18.762695						175	8	3	NaN	NaN	NaN	0.21199	1	6968	6968		24.562	4.1134	1	21553			19489	3082	11155	11501	15508	15508					0.030063651776117695
PEPATAHR	8	Unmodified	_PEPATAHR_					0	0	0		ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.72758367995	2	439.727584	877.440614	0.99197	0.0004362	2.8888	0.0012703	3.8808	0.0017065	439.72851385567344	20.333	0.096176	20.333	20.309	20.405	0	1548	37	0.6837494	0.022341132	0.6837494	278.16742	0	9.088959						96	5	3	NaN	NaN	NaN	0.78967	1	5768	5768		10.605	0.5534	1	9725.1			19490	6015	11156	11502	15509	15509					-0.0030082559362654138
PEPATAHR	8	Unmodified	_PEPATAHR_					0	0	0		ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.72758367995	2	439.727584	877.440614	1.7461	0.00076779	2.6888	0.0011823	4.4349	0.0019501	439.7284084002978	20.694	0.07238	20.68	20.632	20.704	-0.014088	1548	28	0.6837494	0.016754866	0.68222994	278.16742	0	6.816345						43	4	2	NaN	NaN	NaN	0.69898	1	5643	5643		19.118	7.5699	1	2601.7			19491	6015	11156	11502	15510	15510					-0.0030082559362654138
PEPEGGGG	8	Unmodified	_PEPEGGGG_					0	0	0			REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	REV__nc|ENSG00000165244|Q7RTV3-2|ZNF367	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.15084320515007	2	350.150843	698.287133	1.2968	0.00045407	3.2749	0.0011467	4.5717	0.0016008	350.1520701571641	32.732	0.19301	32.732	32.683	32.876	0	1542	64	0.6874725	0.03908205	0.6874725	280.78424	0	15.96228						186	9	3	NaN	NaN	NaN	0.84887	1	3186	3186		0.32989	0	1	16121	+		19492	10375	11157	11503	15511	15511					-0.07407860429930224
PEPETQAP	8	Unmodified	_PEPETQAP_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4046886746	1	868.404689	867.397412	1.2269	0.0010654	2.3992	0.0020834	3.626	0.0031489	868.4065422502565	20.742	0.072298	20.728	20.68	20.752	-0.014088	459	46	1.3464937	0.026857853	1.3449743	273.9485	0	5.4642944						71	4	2	NaN	NaN	NaN	0.76406	1	5484	5484		14.042	0	1	5570.6			19493	1185	11158	11504	15512	15512					-0.041590601615666856
PEPNHVML	8	Unmodified	_PEPNHVML_					0	0	0		ENST00000542698.1_1_12:120117647-120118127:+|nuORF;nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000111725|ENST00000229328|PRKAB1;ENSG00000131791|ENST00000254101|PRKAB2	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.73402011605	2	468.73402	935.453487	1.0089	0.0004729	-1.6481	-0.00077254	-0.63924	-0.00029963	468.7331166277682	27.471	0.12069	27.471	27.422	27.543	0	1368	34	0.7950918	0.02034533	0.7950918	323.15536	0	8.269104						103	6	3	NaN	NaN	NaN	0.81251	1	6731	6731		7.5404	2.0745	1	7001.6			19494	1831	11159	11505	15513	15513					-0.016821305257508357
PEPPGCPG	8	Unmodified	_PEPPGCPG_					0	0	0		ENST00000270747.7_1_1:16539000-16539099:-|nuORF	ENST00000270747.7_1_1:16539000-16539099:-|nuORF	ENST00000270747.7_1_1:16539000-16539099:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3236015821001	1	753.323602	752.316325	1.6845	0.001269	-8.9795	-0.0067645	-7.295	-0.0054955	753.3163797008757	54.908	0.072018	54.908	54.884	54.956	0	558	46	1.2873057	0.026952505	1.2873057	262.53098	0	5.496643						73	4	2	NaN	NaN	NaN	0.84651	1	4099	4099		1.6704	0	1	5930.7			19495	6338	11160	11506	15514	15514					-0.06974039405304211
PEPVLDEELK	10	Unmodified	_PEPVLDEELK_					0	0	0			REV__nc|ENSG00000087274|P35611|ADD1	REV__nc|ENSG00000087274|P35611|ADD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8084362694	2	584.808436	1167.60232	1.819	0.0010638	-6.276	-0.0036703	-4.457	-0.0026065	584.8052777887711	30.728	0.2172	30.728	30.632	30.849	0	1194	103	0.902037	0.062441766	0.902037	365.56476	0	25.305511						492	10	2	NaN	NaN	NaN	0.27719	1	15400	15400		28.896	2.7806	1	298140	+		19496	8697	11161	11507	15515	15515					0.025222538581374465
PEQEGQNI	8	Unmodified	_PEQEGQNI_					0	0	0		ENST00000336798.11_2_1:31351134-31351443:-|nuORF	ENST00000336798.11_2_1:31351134-31351443:-|nuORF	ENST00000336798.11_2_1:31351134-31351443:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.4214013713	1	914.421401	913.414125	1.5182	0.0013882	1.3519	0.0012362	2.8701	0.0026244	914.4226785696173	21.055	0.12043	21.055	21.031	21.151	0	390	43	1.3876231	0.025004506	1.3876231	282.09433	0	5.0832825						99	6	2	NaN	NaN	NaN	0.75347	1	6292	6292		15.463	1.0377	1	9229.5			19497	6526	11162	11508	15516	15516					-0.04604559275617248
PEQEGQNI	8	Unmodified	_PEQEGQNI_					0	0	0		ENST00000336798.11_2_1:31351134-31351443:-|nuORF	ENST00000336798.11_2_1:31351134-31351443:-|nuORF	ENST00000336798.11_2_1:31351134-31351443:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4214013713	1	914.421401	913.414125	1.4088	0.0012883	-0.665	-0.00060809	0.74385	0.00068019	914.4212356412241	21.079	0.096321	21.065	21.017	21.114	-0.014004	387	46	1.389409	0.026789188	1.3878895	282.4574	0	5.446045						104	5	2	NaN	NaN	NaN	0.50906	1	6171	6171		30.61	1.0118	1	9924.9			19498	6526	11162	11508	15517	15517					-0.04604559275617248
PEQLYDYVE	9	Unmodified	_PEQLYDYVE_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.26386159025	2	578.263862	1154.51317	1.6999	0.00098299	-3.5698	-0.0020643	-1.8699	-0.0010813	578.2624038986667	20.189	0.14419	20.189	20.141	20.285	0	1206	67	0.894683	0.04046899	0.894683	362.63242	0	16.402863						219	7	4	NaN	NaN	NaN	0.41766	1	14950	14950		13.003	0.95414	1	19816	+		19499	10152	11163	11509	15518	15518					-0.05790581101382486
PEREAQLE	8	Unmodified	_PEREAQLE_					0	0	0		nc|ENSG00000143951|O95876-3|WDPCP;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-3|WDPCP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.24326353389995	2	486.243264	970.471974	2.0537	0.00099859	2.9761	0.0014471	5.0298	0.0024457	486.24444922119665	17.477	0.095915	17.477	17.453	17.549	0	1350	52	0.80618626	0.031412125	0.80618626	327.49335	0	12.7604065						78	5	2	NaN	NaN	NaN	0.76406	1	7611	7611		14.042	1.0388	1	7622.3			19500	3458	11164	11510	15519	15519					-0.014442973502013956
PEREAYDGILS	11	Unmodified	_PEREAYDGILS_					0	0	0		tr|U7T1J9|U7T1J9_FUSNURibonucleoside-diphosphatereductasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00842PE=3SV=1	tr|U7T1J9|U7T1J9_FUSNURibonucleoside-diphosphatereductasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00842PE=3SV=1	tr|U7T1J9|U7T1J9_FUSNURibonucleoside-diphosphatereductasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00842PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3065920722	2	625.306592	1248.59863	0.93056	0.00058188	-3.7344	-0.0023351	-2.8038	-0.0017532	625.3048081812418	24.623	0.072338	24.61	24.586	24.658	-0.012394	1167	76	0.91857195	0.045880854	0.9170525	371.98373	0	18.579865						143	4	3	NaN	NaN	NaN	0.62612	1	16994	16994		12.307	0	1	12474			19501	13946	11165	11511	15520	15520					-0.015724159157116446
PEREQLQA	8	Unmodified	_PEREQLQA_					0	0	0		ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4952350164001	1	970.495235	969.487959	1.3904	0.0013493	-4.1984	-0.0040745	-2.808	-0.0027252	970.4907105299724	22.042	0.09626	22.029	21.981	22.077	-0.013731	318	73	1.4304334	0.042764783	1.428914	290.54758	0	8.68634						108	5	2	NaN	NaN	NaN	0.82332	1	7441	7441		6.0903	0	1	7480.4			19502	6854	11166	11512	15521	15521					0.0019940888671499124
PEREQLQA	8	Unmodified	_PEREQLQA_					0	0	0		ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4952350164001	1	970.495235	969.487959	1.2639	0.0012267	-3.667	-0.0035588	-2.4031	-0.0023322	970.491830312347	22.163	0.096491	22.149	22.125	22.222	-0.013731	318	67	1.4304334	0.039192796	1.428914	290.54758	0	7.960785						106	5	2	NaN	NaN	NaN	0.82332	1	7442	7442		6.0903	0	1	8479.5			19503	6854	11166	11512	15522	15522					0.0019940888671499124
PEREQLQA	8	Unmodified						0	0	0		ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	ENST00000409160.7_1_2:239147470-239147986:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	970.495235	969.487959	1.9799	0.0019215	-4.7394	-0.0045996	-2.7596	-0.0026782	970.491021617022	22.043	0.072279	22.043	21.994	22.067	0	321	73	1.4286518	0.042764783	1.4286518	290.1857		8.68634	0.0070123	-0.00028012	-0.00013107	NaN	6.0903	114	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8593.8			19504	6854	11166	11512							0.0019940888671499124
PERLFGSAANV	11	Unmodified	_PERLFGSAANV_					0	0	0		ENST00000515319.6_1_X:2405587-2406978:-|nuORF;ENSG00000214717|ENST00000652001|ZBED1	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1160.6058480983	1	1160.60585	1159.59857	2.3765	0.0027581	-1.0701	-0.001242	1.3063	0.0015161	1160.605872796272	32.659	0.096519	32.659	32.635	32.732	0	60	64	1.582944	0.03708136	1.582944	320.78568	0	7.5145874						119	5	2	NaN	NaN	NaN	0.54514	1	15128	15128		16.858	0.44166	1	10670			19505	5989	11167	11513	15523	15523					0.02515628874948561
PESCFPGA	8	Unmodified	_PESCFPGA_					0	0	0		ENST00000508564.1_1_12:54519960-54520374:+|nuORF	ENST00000508564.1_1_12:54519960-54520374:+|nuORF	ENST00000508564.1_1_12:54519960-54520374:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.1707213675	2	404.170721	806.32689	1.645	0.00066486	-4.3763	-0.0017688	-2.7313	-0.0011039	404.1695611963908	28.943	0.43444	28.943	28.894	29.329	0	1443	73	0.7487872	0.04450792	0.7487872	305.03992	0	18.131561						856	19	6	NaN	NaN	NaN	0.8439	1	4833	4833		3.1533	0	1	685240			19506	7342	11168	11514	15524	15524					-0.08402056750878728
PESFYEFFI	9	Unmodified	_PESFYEFFI_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.77386517055	2	589.773865	1177.53318	1.0581	0.00062407	8.697	0.0051293	9.7552	0.0057534	589.7793495415658	24.55	0.048151	24.538	24.514	24.562	-0.012394	1170	61	0.91673553	0.036734402	0.9152161	371.48492	0	14.885742						75	3	2	NaN	NaN	NaN	0.29681	1	15164	15164		19.118	7.0696	1	16506			19507	3520	11169	11515	15525	15525					-0.048487853707683826
PESLTSLLVLL	11	Unmodified	_PESLTSLLVLL_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68822646-68853210:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8604718399001	2	592.860472	1183.70639	0.57603	0.00034151	-3.1253	-0.0018529	-2.5493	-0.0015114	592.858782954568	37.843	0.12024	37.843	37.795	37.915	0	1167	46	0.91857195	0.027543366	0.91857195	372.20667	0	11.160614						139	6	3	NaN	NaN	NaN	0.1667	1	15980	15980		33.425	2.8152	1	14240			19508	4125	11170	11516	15526	15526					0.12188580685665329
PETAVIGLL	9	Unmodified	_PETAVIGLL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5400599440001	1	912.54006	911.532783	1.9317	0.0017628	-0.48455	-0.00044217	1.4472	0.0013206	912.5418900921327	28.291	0.072414	28.291	28.243	28.315	0	324	49	1.42687	0.028512955	1.42687	290.08185	0	5.7966614						84	4	2	NaN	NaN	NaN	0.062072	1	6265	6265		41.785	12.186	1	8492.4			19509	3007	11171	11517	15527	15527					0.07347839700048553
PETGAGWV	8	Unmodified	_PETGAGWV_					0	0	0		ENST00000333396.11_1_3:97690796-97691117:-|nuORF	ENST00000333396.11_1_3:97690796-97691117:-|nuORF	ENST00000333396.11_1_3:97690796-97691117:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	816.3886446799002	1	816.388645	815.381368	1.5843	0.0012934	-8.628	-0.0070438	-7.0437	-0.0057504	816.3816966063346	32.851	0.12061	32.848	32.824	32.945	-0.0031052	492	40	1.3267875	0.023303986	1.325268	270.20786	0	4.746002						81	6	2	NaN	NaN	NaN	0.79379	1	4853	4853		10.052	1.7613	1	5725.6			19510	6513	11172	11518	15528	15528					-0.03370721607802807
PETLQKHQRF	10	Unmodified	_PETLQKHQRF_					0	0	0		nc|ENSG00000146926|Q8WXI3-3|ASB10;ENSG00000146926|ENST00000420175|ASB10	nc|ENSG00000146926|Q8WXI3-3|ASB10	nc|ENSG00000146926|Q8WXI3-3|ASB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.56668277866663	3	428.566683	1282.67822	1.9336	0.00082868	6.9356	0.0029724	8.8693	0.0038011	428.5710059325137	18.676	0.19186	18.676	18.604	18.796	0	1422	40	0.7617651	0.024091423	0.7617651	462.58676	0	14.629669						209	9	3	NaN	NaN	NaN	0.70538	1	18474	18474		7.6826	0.55222	1	22251			19511	3579	11173	11519	15529	15529					0.04818695548942742
PETSYNTDFAP	11	Unmodified	_PETSYNTDFAP_					0	0	0			REV__ENST00000420752.1_1_10:50979994-50980189:+|nuORF	REV__ENST00000420752.1_1_10:50979994-50980189:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.26967524965	2	621.269675	1240.5248	1.641	0.0010195	4.9464	0.003073	6.5874	0.0040926	621.2724425446781	25.129	0.28955	25.129	25.009	25.298	0	1170	82	0.91673553	0.049572706	0.91673553	371.26645	0	20.076324						502	13	3	NaN	NaN	NaN	0.37016	1	17537	17537		23.118	2.6043	1	82167	+		19512	8564	11174	11520	15530	15530					-0.08584384078039875
PEVAGDLI	8	Unmodified	_PEVAGDLI_					0	0	0		nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.R4843H|1|0.43|ENSG00000179869|chr7:48587176-48587176|G/A|missense_variant	nc|ENSG00000179869|Q86UQ4-6|ABCA13	nc|ENSG00000179869|Q86UQ4-6|ABCA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.4352605215	1	813.435261	812.427984	1.9356	0.0015745	0.39028	0.00031746	2.3259	0.0018919	813.4354125060538	24.888	0.07239	24.888	24.864	24.936	0	528	49	1.3052634	0.028717041	1.3052634	265.84033	0	5.848755						75	4	2	NaN	NaN	NaN	0.67593	1	4919	4919		20.555	4.1388	1	6966.4			19513	5170	11175	11521	15531	15531					0.014267182234789288
PEVEEEVEL	9	Unmodified	_PEVEEEVEL_					0	0	0		ENST00000388822.9_1_4:119631314-119631464:+|nuORF	ENST00000388822.9_1_4:119631314-119631464:+|nuORF	ENST00000388822.9_1_4:119631314-119631464:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5044622987	1	1072.50446	1071.49719	0.96801	0.0010382	-0.46306	-0.00049663	0.50495	0.00054157	1072.503776785336	20.863	0.12042	20.849	20.801	20.921	-0.014088	204	73	1.4979934	0.042565465	1.496474	303.864	0	8.634277						141	6	2	NaN	NaN	NaN	0.23112	1	11319	11319		23.334	1.4994	1	12968			19514	6746	11176	11522	15532	15532					-0.03570287338266098
PEVSVGHQ	8	Unmodified	_PEVSVGHQ_					0	0	0		sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4210074408002	1	852.421007	851.413731	1.9715	0.0016805	-7.4184	-0.0063236	-5.4469	-0.0046431	852.4134130565146	30.101	0.12067	30.101	30.101	30.222	0	450	55	1.3518641	0.032213926	1.3518641	275.12173	0	6.5559387						142	6	3	NaN	NaN	NaN	0.78264	1	5404	5404		11.548	2.4253	1	9646.4			19515	13692	11177	11523	15533	15533					-0.017919342048003273
PEYGGGPS	8	Unmodified	_PEYGGGPS_					0	0	0			REV__ENSG00000170561|ENST00000302057|IRX2	REV__ENSG00000170561|ENST00000302057|IRX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3257100721002	1	763.32571	762.318434	2.0454	0.0015613	-10.922	-0.0083372	-8.8768	-0.0067759	763.3174051623192	23.344	0.14479	23.331	23.307	23.451	-0.013294	615	91	1.2531329	0.05404055	1.2516136	255.50182	0	11.018356						182	7	2	NaN	NaN	NaN	0.8439	1	4164	4164		3.1533	0	1	13298	+		19516	10592	11178	11524	15534	15534					-0.07223287395845546
PFAAVGAL	8	Unmodified	_PFAAVGAL_					0	0	0			REV__nc|ENSG00000139910|P51513-5|NOVA1	REV__nc|ENSG00000139910|P51513-5|NOVA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.4243019047	1	745.424302	744.417025	1.374	0.0010242	-7.3142	-0.0054522	-5.9402	-0.004428	745.4188497992386	29.231	0.072378	29.224	29.2	29.272	-0.0077209	630	46	1.2441287	0.027018785	1.2426093	253.77371	0	5.511215						91	4	2	NaN	NaN	NaN	0.84876	1	3897	3897		0.39566	0	1	11533	+		19517	9782	11179	11525	15535	15535					0.0345936063984027
PFACGACGKAF	11	Unmodified	_PFACGACGKAF_					0	0	0		ENSG00000250571|ENST00000340042|GLI4;ENST00000523812.1_1_8:144357822-144358971:+|nuORF	ENSG00000250571|ENST00000340042|GLI4	ENSG00000250571|ENST00000340042|GLI4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2411550439	2	536.241155	1070.46776	1.6211	0.00086929	4.43	0.0023755	6.0511	0.0032448	536.2444451107639	29.232	0.12067	29.232	29.16	29.28	0	1296	70	0.8394264	0.042416096	0.8394264	340.55093	0	17.207977						230	6	3	NaN	NaN	NaN	0.44477	1	11567	11567		20.449	5.2733	1	22864			19518	6105	11180	11526	15536	15536					-0.06465801369131441
PFAESLLFL	9	Unmodified	_PFAESLLFL_					0	0	0			REV__ENST00000547761.6_1_12:53708901-53715765:-|nuORF	REV__ENST00000547761.6_1_12:53708901-53715765:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7893182695001	2	518.789318	1035.56408	1.6431	0.00085241	-3.3434	-0.0017345	-1.7004	-0.00088212	518.7881591979325	19.996	0.048122	19.982	19.958	20.006	-0.014141	1233	31	0.87812483	0.018406928	0.8766054	356.40323	0	7.4707947						69	3	3	NaN	NaN	NaN	0.66529	1	9814	9814		2.1763	0	1	7045.7	+		19519	12723	11181	11527	15537	15537					0.047724127341325584
PFAESLLFL	9	Unmodified						0	0	0			REV__ENST00000547761.6_1_12:53708901-53715765:-|nuORF	REV__ENST00000547761.6_1_12:53708901-53715765:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.789318	1035.56408	1.6431	0.00085241	-3.3434	-0.0017345	-1.7004	-0.00088212	518.7881591979325	19.996	0.048122	19.982	19.958	20.006	-0.014141	1233	31	0.87812483	0.018406928	0.8766054	356.40323		7.4707947	0.0046227	0.00042936	-0.00075972	NaN	2.1763	69	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7045.7	+		19520	12723	11181	11527							0.047724127341325584
PFAGGGVP	8	Unmodified	_PFAGGGVP_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3617016479	1	701.361702	700.354425	1.2047	0.00084496	-10.737	-0.0075307	-9.5325	-0.0066857	701.353962365703	30.246	0.19305	30.246	30.173	30.366	0	1068	46	0.97906286	0.027445495	0.97906286	199.93347	0	5.6046143						134	9	2	NaN	NaN	NaN	0.81214	1	3225	3225		7.5902	3.5366	1	11236	+		19521	9884	11182	11528	15538	15538					-0.00773785428350493
PFAPAIQTF	9	Unmodified	_PFAPAIQTF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5247442308	1	991.524744	990.517468	2.0661	0.0020486	-1.4256	-0.0014135	0.64053	0.0006351	991.523062850567	27.857	0.072401	27.857	27.833	27.905	0	255	52	1.4678029	0.030212998	1.4678029	298.0493	0	6.13501						123	4	3	NaN	NaN	NaN	0.026295	1	8234	8234		63.958	41.832	1	8876.3			19522	5255	11183	11529	15539	15539					0.021829729028468137
PFAPAIQTF	9	Unmodified						0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	991.524744	990.517468	1.5372	0.0015242	-0.050032	-4.9608E-05	1.4872	0.0014746	991.5251795733022	27.88	0.048311	27.87	27.846	27.895	-0.009552	255	64	1.4678029	0.037329912	1.4662834	298.0493		7.580139	0.0069143	0.00065023	-0.00075972	NaN	63.958	100	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7246.4			19523	5255	11183	11529							0.021829729028468137
PFATDRLP	8	Unmodified	_PFATDRLP_					0	0	0			REV__nc|ENSG00000174898|Q86XM0-2|CATSPERD	REV__nc|ENSG00000174898|Q86XM0-2|CATSPERD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4886930755	1	916.488693	915.481417	1.5347	0.0014065	-4.1048	-0.003762	-2.5701	-0.0023555	916.4847631427083	29.184	0.16892	29.184	29.063	29.232	0	360	58	1.405474	0.033896923	1.405474	285.71375	0	6.8907776						223	8	2	NaN	NaN	NaN	0.49126	1	6333	6333		31.561	0	1	32314	+		19524	10710	11184	11530	15540	15540					0.020295157259852203
PFAVNLGNTF	10	Unmodified	_PFAVNLGNTF_					0	0	0			REV__ENST00000492010.1_1_3:137834300-137834606:-|nuORF	REV__ENST00000492010.1_1_3:137834300-137834606:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2796490402	2	540.279649	1078.54475	0.56155	0.00030339	9.2578	0.0050018	9.8194	0.0053052	540.2849357519874	31.886	0.14477	31.881	31.833	31.978	-0.0044155	1257	94	0.86339295	0.05715102	0.8618735	350.2407	0	23.183655						179	7	2	NaN	NaN	NaN	0.72631	1	11613	11613		6.2502	0.15988	1	19901	+		19525	12469	11185	11531	15541	15541					0.008614564432036786
PFCASPRFPLE	11	Unmodified	_PFCASPRFPLE_					0	0	0			REV__ENST00000265077.7_1_5:82767309-82767426:+|nuORF	REV__ENST00000265077.7_1_5:82767309-82767426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.31316589405	2	632.313166	1262.61178	1.0985	0.0006946	8.2099	0.0051912	9.3084	0.0058858	632.8194913105488	27.204	0.16892	27.194	27.098	27.267	-0.010126	1146	61	0.93142134	0.03669083	0.9299019	377.14136	0	14.856445						159	8	2	NaN	NaN	NaN	0.50669	1	17268	17268		18.233	7.0632	1	21558	+		19526	11567	11186	11532	15542	15542					-0.009022563373264347
PFCILQFTCVW	11	Unmodified	_PFCILQFTCVW_					0	0	0		ENST00000344756.8_1_7:155101204-155101297:+|nuORF	ENST00000344756.8_1_7:155101204-155101297:+|nuORF	ENST00000344756.8_1_7:155101204-155101297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.8275945377501	2	678.827595	1355.64064	1.5221	0.0010332	3.2244	0.0021888	4.7465	0.0032221	678.8297780467276	20.453	0.072166	20.439	20.415	20.487	-0.014143	1125	31	0.9442611	0.018335521	0.94274163	382.0563	0	7.418701						58	4	2	NaN	NaN	NaN	0.64343	1	18727	18727		11.17	0	1	5314.3			19527	6552	11187	11533	15543	15543					-0.02295855032525651
PFCILQFTCVW	11	Unmodified						0	0	0		ENST00000344756.8_1_7:155101204-155101297:+|nuORF	ENST00000344756.8_1_7:155101204-155101297:+|nuORF	ENST00000344756.8_1_7:155101204-155101297:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	678.827595	1355.64064	1.305	0.00088585	0.97205	0.00065985	2.277	0.0015457	678.8282449325051	20.429	0.12016	20.429	20.357	20.477	0	1119	40	0.9479278	0.023829699	0.9479278	383.53992		9.641724	-0.0050245	-0.0018218	0.0025931	NaN	11.17	73	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6025.4			19528	6552	11187	11533							-0.02295855032525651
PFCLGIQELV	10	Unmodified	_PFCLGIQELV_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.5353321735666	3	373.535332	1117.58417	2.2735	0.00084922	5.8318	0.0021784	8.1052	0.0030276	373.5376043082205	17.834	0.11985	17.82	17.748	17.868	-0.013786	1557	28	0.67816323	0.016760409	0.6766438	412.4653	0	10.193817						82	6	2	NaN	NaN	NaN	0.60686	1	13186	13186		8.3538	0	1	6284.7	+		19529	9127	11188	11534	15544	15544					0.030078404024152405
PFDPVLFDL	9	Unmodified	_PFDPVLFDL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;ENST00000483194.1_1_2:32668601-32674013:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.77895054845	2	531.778951	1061.54335	0.52253	0.00027787	-0.84018	-0.00044679	-0.31765	-0.00016892	531.7782032223357	35.143	0.14482	35.143	35.094	35.239	-4.5776E-05	1266	76	0.85786515	0.046069622	0.8563457	348.06863	0	18.6922						299	7	3	NaN	NaN	NaN	0.45297	1	10930	10930		11.548	0	1	32246			19530	2037	11189	11535	15545	15545					0.015038223544479479
PFDRECPET	9	Unmodified	_PFDRECPET_					0	0	0			REV__ENST00000542275.5_1_2:120124645-120124819:+|nuORF	REV__ENST00000542275.5_1_2:120124645-120124819:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.23458122205	2	547.234581	1092.45461	1.2367	0.00067679	1.1083	0.00060651	2.3451	0.0012833	547.2356633482179	14.956	0.14428	14.944	14.896	15.04	-0.011738	1293	61	0.84127116	0.036905527	0.8397517	341.2121	0	14.968536						130	7	3	NaN	NaN	NaN	0.54912	1	12172	12172		7.5876	0	1	9048.5	+		19531	12701	11190	11536	15546	15546					-0.08791960947519328
PFDRRSTRRRR	11	Unmodified	_PFDRRSTRRRR_					0	0	0			REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.9298057361499	2	751.929806	1501.84506	1.7396	0.001308	-2.0205	-0.0015193	-0.28093	-0.00021124	752.4295042491336	22.091	0.096542	22.091	22.091	22.187	0	978	52	1.0338683	0.031018019	1.0338683	417.9009	0	12.537781						54	5	2	NaN	NaN	NaN	0.77843	1	20591	20591		0.51604	0	1	5241.7	+		19532	11579	11191	11537	15547	15547					0.1142098121717936
PFDRRSTRRRR	11	Unmodified						0	0	0			REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	751.929806	1501.84506	1.7396	0.001308	-2.0205	-0.0015193	-0.28093	-0.00021124	752.4295042491336	22.091	0.096542	22.091	22.091	22.187	0	978	52	1.0338683	0.031018019	1.0338683	417.9009		12.537781	-0.0050127	-0.0039959	-0.00015218	NaN	0.51604	54	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5241.7	+		19533	11579	11191	11537							0.1142098121717936
PFDRRSTRRRR	11	Unmodified						0	0	0			REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	REV__ENST00000267984.3_1_15:81294113-81294617:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	751.929806	1501.84506	2.8429	0.0021377	3.2978	0.0024797	6.1408	0.0046174	751.9332541374133	22.115	0.024111	22.101	22.101	22.125	-0.013731	975	25	1.0356921	0.014591098	1.0341727	418.6381		5.8979187	0.0050127	0.0040021	0.00015218	NaN	0.51604	24	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1712.7	+		19534	11579	11191	11537							0.1142098121717936
PFEPLDIF	8	Unmodified	_PFEPLDIF_					0	0	0			REV__ENSG00000145692|ENST00000274353|BHMT	REV__ENSG00000145692|ENST00000274353|BHMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4978607783	1	977.497861	976.490584	1.7719	0.001732	-3.2301	-0.0031574	-1.4582	-0.0014254	977.4937624101918	28.218	0.072449	28.209	28.185	28.257	-0.0089779	246	52	1.4731345	0.03020978	1.4716152	299.1909	0	6.135559						87	4	2	NaN	NaN	NaN	0.80071	1	7634	7634		9.1232	2.873	1	5697.2	+		19535	9931	11192	11538	15548	15548					0.0013986429166834569
PFEPLDIF	8	Unmodified						0	0	0			REV__ENSG00000145692|ENST00000274353|BHMT	REV__ENSG00000145692|ENST00000274353|BHMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	977.497861	976.490584	2.0314	0.0019857	-4.6252	-0.0045211	-2.5937	-0.0025354	977.4955499100754	28.194	0.048262	28.194	28.194	28.243	0	249	55	1.4713576	0.031985164	1.4713576	298.83		6.4961243	-0.0072266	-0.00072301	-0.0001288	NaN	9.1232	81	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6016.3	+		19536	9931	11192	11538							0.0013986429166834569
PFEPLDIF	8	Unmodified						0	0	0			REV__ENSG00000145692|ENST00000274353|BHMT	REV__ENSG00000145692|ENST00000274353|BHMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	977.497861	976.490584	1.7719	0.001732	-3.2301	-0.0031574	-1.4582	-0.0014254	977.4937624101918	28.218	0.072449	28.209	28.185	28.257	-0.0089779	246	52	1.4731345	0.03020978	1.4716152	299.1909		6.135559	0.0072266	0.00064066	0.0001288	NaN	9.1232	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5697.2	+		19537	9931	11192	11538							0.0013986429166834569
PFFLCVFLL	9	Unmodified	_PFFLCVFLL_					0	0	0		ENST00000395184.5_1_4:86396590-86491711:+|nuORF	ENST00000395184.5_1_4:86396590-86491711:+|nuORF	ENST00000395184.5_1_4:86396590-86491711:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.80645677765	2	549.806457	1097.59836	0.85034	0.00046752	-4.95	-0.0027215	-4.0996	-0.002254	549.8036752135132	31.331	0.14478	31.326	31.253	31.398	-0.0050716	1200	52	0.89836043	0.03125626	0.896841	364.34573	0	12.676544						177	7	3	NaN	NaN	NaN	0.48931	1	12427	12427		10.052	0	1	24244			19538	6782	11193	11539	15549	15549					0.05346537621380776
PFFNPIQTQVF	11	Unmodified	_PFFNPIQTQVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3480629564	2	669.348063	1336.68157	1.1022	0.00073774	-1.7312	-0.0011588	-0.62899	-0.00042101	669.3469463172855	32.852	0.14479	32.852	32.78	32.925	0	1122	64	0.9460945	0.038485885	0.9460945	382.85297	0	15.573975						205	7	3	NaN	NaN	NaN	0.026761	1	19358	19358		58.398	43.544	1	24921			19539	3460	11194	11540	15550	15550					0.02669945602929147
PFFNPIQTQVF	11	Unmodified	_PFFNPIQTQVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3480629564	2	669.348063	1336.68157	1.0531	0.00070486	-2.4392	-0.0016327	-1.3861	-0.0009278	669.3457865278832	32.851	0.12066	32.848	32.8	32.92	-0.0031052	1119	61	0.9479278	0.036651254	0.94640833	383.59482	0	14.831543						206	6	3	NaN	NaN	NaN	0.01289	1	18495	18495		66.481	40.68	1	23708			19540	3460	11194	11540	15551	15551					0.02669945602929147
PFFRYRTYLD	10	Unmodified	_PFFRYRTYLD_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.9031834632667	3	459.903183	1376.68772	1.2931	0.00059472	-1.0397	-0.00047817	0.25342	0.00011655	459.9027139519467	21.946	0.072292	21.946	21.922	21.994	0	1392	34	0.780288	0.020365238	0.780288	473.49054	0	12.35791						45	4	2	NaN	NaN	NaN	0.77918	1	19865	19865		0.71611	0.22534	1	3825.3			19541	2459	11195	11541	15552	15552					0.01444463834468479
PFFVLEQYF	9	Unmodified	_PFFVLEQYF_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3000501313	2	595.30005	1188.58555	1.6797	0.00099991	4.5288	0.002696	6.2084	0.0036959	595.3020058992404	25.853	0.12069	25.841	25.793	25.914	-0.0116	1179	82	0.9112251	0.04958874	0.90970564	369.21222	0	20.092468						134	4	2	NaN	NaN	NaN	0.3389	1	15506	15506		16.417	1.2413	1	28418	+		19542	8323	11196	11542	15553	15553					-0.0012020223714444
PFFVLEQYF	9	Unmodified						0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.30005	1188.58555	1.7988	0.0010708	2.0091	0.001196	3.8078	0.0022668	595.3010393053127	25.829	0.16891	25.829	25.757	25.926	0	1170	88	0.91673553	0.053261995	0.91673553	371.44495		21.580841	-0.0061381	-0.0013533	0.0035149	NaN	16.417	289	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49582	+		19543	8323	11196	11542							-0.0012020223714444
PFFVLEQYF	9	Unmodified						0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.30005	1188.58555	1.6797	0.00099991	4.5288	0.002696	6.2084	0.0036959	595.3020058992404	25.853	0.12069	25.841	25.793	25.914	-0.0116	1179	82	0.9112251	0.04958874	0.90970564	369.21222		20.092468	0.0061381	0.0016466	-0.0035149	NaN	16.417	134	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28418	+		19544	8323	11196	11542							-0.0012020223714444
PFGAGGAG	8	Unmodified	_PFGAGGAG_					0	0	0		ENST00000479098.1_1_2:74725900-74726092:-|nuORF	ENST00000479098.1_1_2:74725900-74726092:-|nuORF	ENST00000479098.1_1_2:74725900-74726092:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.15318892885	2	317.153189	632.291825	1.4619	0.00046364	4.9007	0.0015543	6.3626	0.0020179	317.155021395311	39.813	0.14469	39.819	39.674	39.819	0.0060463	1485	88	0.72280174	0.05389428	0.7212823	295.80386	0	22.05603						239	7	2	NaN	NaN	NaN	0.84651	1	1448	1448		1.6704	0	1	24968			19545	7192	11197	11543	15554	15554					-0.03902931496520523
PFGAGGAG	8	Unmodified						0	0	0		ENST00000479098.1_1_2:74725900-74726092:-|nuORF	ENST00000479098.1_1_2:74725900-74726092:-|nuORF	ENST00000479098.1_1_2:74725900-74726092:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.153189	632.291825	0.918	0.00029115	6.4169	0.0020351	7.3349	0.0023263	317.15552620334756	39.863	0.096447	39.863	39.815	39.911	0	1485	106	0.72280174	0.06505197	0.72280174	295.80386		26.622253	0.022137	0.00050067	0.00075972	NaN	1.6704	191	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18500			19546	7192	11197	11543							-0.03902931496520523
PFHDPCPVI	9	Unmodified	_PFHDPCPVI_					0	0	0		CON__P01030	CON__P01030	CON__P01030	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4920638939	1	1024.49206	1023.48479	2.2118	0.002266	3.2022	0.0032806	5.414	0.0055466	1024.494706619466	29.498	0.2655	29.498	29.377	29.642	0	243	133	1.4749115	0.07811129	1.4749115	299.3603	0	15.854095						702	12	4	NaN	NaN	NaN	0.01663	1	9495	9495		76.264	8.1553	1	128060		+	19547	186	11198	11544	15555	15555					-0.02601557491652784
PFHPPGRGRRW	11	Unmodified	_PFHPPGRGRRW_					0	0	0			REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8681542195501	2	681.868154	1361.72176	1.6032	0.0010931	-3.3638	-0.0022937	-1.7607	-0.0012005	681.8661043707687	21.464	0.14464	21.464	21.44	21.585	0	1080	49	0.9717421	0.029289424	0.9717421	393.15768	0	11.85025						175	7	3	NaN	NaN	NaN	0.51407	1	19703	19703		17.97	5.4	1	19137	+		19548	13347	11199	11545	15556	15556					0.05536349836734189
PFHPPGRGRRW	11	Unmodified						0	0	0			REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	681.868154	1361.72176	1.6032	0.0010931	-3.3638	-0.0022937	-1.7607	-0.0012005	681.8661043707687	21.464	0.14464	21.464	21.44	21.585	0	1080	49	0.9717421	0.029289424	0.9717421	393.15768		11.85025	-0.077391	-0.0001633	0.0016751	NaN	17.97	175	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19137	+		19549	13347	11199	11545							0.05536349836734189
PFHPPGRGRRW	11	Unmodified						0	0	0			REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|54|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	681.868154	1361.72176	1.526	0.0010405	-3.0621	-0.0020879	-1.5361	-0.0010474	682.3675200394761	21.633	0.19263	21.619	21.547	21.74	-0.013895	1083	43	0.9699114	0.02563101	0.96839195	392.41702		10.370087	0.077391	0.00024817	-0.0016751	NaN	17.97	221	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17335	+		19550	13347	11199	11545							0.05536349836734189
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.83713412935	2	621.837134	1241.65972	1.2392	0.00077059	-4.5616	-0.0028366	-3.3224	-0.002066	621.8344688492099	32.732	0.19303	32.732	32.635	32.828	0	1164	82	0.9204082	0.049556673	0.9204082	372.7501	0	20.069641						485	9	4	NaN	NaN	NaN	0.0076061	1	17576	17576		74.332	55.214	1	89613			19551	549	11200	11546	15557	15557					0.04855185645033089
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.83713412935	2	621.837134	1241.65972	0.72956	0.00045366	0.38625	0.00024018	1.1158	0.00069385	622.3416318949872	32.803	0.41027	32.8	32.51	32.92	-0.0031052	1158	85	0.92408	0.051383734	0.9225606	374.23712	0	20.8096						589	18	4	NaN	NaN	NaN	0.13037	1	16831	16831		41.785	21.229	1	108210			19552	549	11200	11546	15558	15558					0.04855185645033089
PFHRALHFNF	10	Unmodified	_PFHRALHFNF_					0	0	0		ENST00000407308.1_1_22:31062816-31062960:-|nuORF	ENST00000407308.1_1_22:31062816-31062960:-|nuORF	ENST00000407308.1_1_22:31062816-31062960:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.224479885	3	429.22448	1284.65161	1.3401	0.00057519	6.1221	0.0026278	7.4622	0.003203	429.2274971015232	20.141	0.12014	20.141	20.117	20.237	0	1431	43	0.75620437	0.025957286	0.75620437	459.20245	0	15.762482						117	6	2	NaN	NaN	NaN	0.56921	1	18514	18514		9.5705	1.7665	1	16178			19553	6850	11201	11547	15559	15559					0.020670514482617364
PFIQSVVTLAM	11	Unmodified	_PFIQSVVTLAM_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.3335669851501	2	603.333567	1204.65258	0.66848	0.00040332	1.9324	0.0011659	2.6009	0.0015692	603.3355306895428	27.832	0.19311	27.822	27.702	27.895	-0.009552	1146	52	0.93142134	0.031192243	0.9299019	377.33762	0	12.636627						179	9	2	NaN	NaN	NaN	0.71564	1	15953	15953		6.4299	0.51015	1	23297	+		19554	8653	11202	11548	15560	15560					0.05844084982300046
PFISAKPPKF	10	Unmodified	_PFISAKPPKF_					0	0	0			REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.3316846107	2	566.331685	1130.64882	1.0499	0.00059462	-3.8964	-0.0022066	-2.8464	-0.001612	566.3291335632194	32.755	0.096508	32.752	32.655	32.752	-0.0031013	1206	46	0.894683	0.02757907	0.89316356	362.72275	0	11.181122						103	5	2	NaN	NaN	NaN	0.62092	1	13659	13659		13.463	1.9146	1	8169.4	+		19555	12526	11203	11549	15561	15561					0.08871783270728884
PFISAKPPKF	10	Unmodified						0	0	0			REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.331685	1130.64882	1.4622	0.00082807	-2.2343	-0.0012654	-0.77214	-0.00043729	566.3302506960381	32.37	0.16894	32.37	32.297	32.466	0	1206	49	0.894683	0.029419243	0.894683	362.72275		11.927155	-0.19095	0.00044799	0.00075972	NaN	13.463	137	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10745	+		19556	12526	11203	11549							0.08871783270728884
PFISAKPPKF	10	Unmodified						0	0	0			REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	REV__ENST00000503742.5_1_4:103723687-103747665:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.331685	1130.64882	1.0499	0.00059462	-3.8964	-0.0022066	-2.8464	-0.001612	566.3291335632194	32.755	0.096508	32.752	32.655	32.752	-0.0031013	1206	46	0.894683	0.02757907	0.89316356	362.72275		11.181122	0.19095	-0.0014346	-0.00075972	NaN	13.463	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8169.4	+		19557	12526	11203	11549							0.08871783270728884
PFLGAKSFRSD	11	Unmodified	_PFLGAKSFRSD_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8222123466501	2	612.822212	1223.62987	1.2513	0.0007668	-4.3882	-0.0026892	-3.1369	-0.0019224	612.8189933982522	17.069	0.14408	17.069	17.045	17.189	0	1158	58	0.92408	0.034869432	0.92408	374.29776	0	14.12384						155	7	2	NaN	NaN	NaN	0.58731	1	17066	17066		14.854	1.3909	1	20457	+		19558	10276	11204	11550	15562	15562					0.027002019090332396
PFLGAKSFRSD	11	Unmodified						0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.822212	1223.62987	1.2513	0.0007668	-4.3882	-0.0026892	-3.1369	-0.0019224	612.8189933982522	17.069	0.14408	17.069	17.045	17.189	0	1158	58	0.92408	0.034869432	0.92408	374.29776		14.12384	-0.027546	-0.0029388	0.00075972	NaN	14.854	155	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20457	+		19559	10276	11204	11550							0.027002019090332396
PFLGDNDA	8	Unmodified	_PFLGDNDA_					0	0	0		nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.3784739240999	1	848.378474	847.371197	0.9949	0.00084405	4.1254	0.0034999	5.1203	0.004344	848.3817095295643	28.073	0.096542	28.064	28.04	28.137	-0.0089779	438	43	1.359022	0.025049925	1.3575026	276.59937	0	5.098358						99	5	2	NaN	NaN	NaN	0.80071	1	5222	5222		9.1232	0.83292	1	7972.3			19560	3542	11205	11551	15563	15563					-0.05859329333054575
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.5403942950002	1	1005.54039	1004.53312	1.1515	0.0011578	-3.328	-0.0033464	-2.1765	-0.0021886	1005.5372041641076	31.79	0.14481	31.79	31.718	31.863	0	237	91	1.4784646	0.053257704	1.4784646	300.15674	0	10.812317						215	7	3	NaN	NaN	NaN	0.021751	1	8767	8767		69.782	0	1	24696			19561	2449	11206	11552	15564	15564					0.03103259419913229
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5403942950002	1	1005.54039	1004.53312	0.77361	0.0007779	-2.9488	-0.0029652	-2.1752	-0.0021873	1005.5365962589206	31.765	0.096586	31.761	31.712	31.809	-0.0044155	234	91	1.4802408	0.05326891	1.4787214	300.51736	0	10.814636						235	5	3	NaN	NaN	NaN	0.055351	1	8595	8595		44.638	0	1	26192			19562	2449	11206	11552	15565	15565					0.03103259419913229
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8080423389001	2	576.808042	1151.60153	1.443	0.00083235	-4.6987	-0.0027103	-3.2557	-0.0018779	576.8046592164961	35.94	0.21695	35.94	35.892	36.109	0	1194	109	0.902037	0.06618625	0.902037	365.62405	0	26.827362						460	10	3	NaN	NaN	NaN	0.10964	1	14865	14865		44.638	0	1	47869			19563	2449	11207	11553	15566	15566					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8080423389001	2	576.808042	1151.60153	1.5624	0.0009012	-1.7291	-0.00099736	-0.16671	-9.6161E-05	576.806821995439	36.591	0.19275	36.591	36.543	36.736	0	1194	94	0.902037	0.056972206	0.902037	365.62405	0	23.09262						392	9	3	NaN	NaN	NaN	0.25724	1	14866	14866		30.61	0	1	38844			19564	2449	11207	11553	15567	15567					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8080423389001	2	576.808042	1151.60153	1.0312	0.00059482	-2.248	-0.0012966	-1.2167	-0.00070182	576.8070255027744	35.938	0.21697	35.94	35.843	36.06	0.0011024	1203	106	0.8965218	0.06434423	0.89500237	363.38855	0	26.08078						412	10	3	NaN	NaN	NaN	0.22448	1	14359	14359		33.425	0	1	41138			19565	2449	11207	11553	15568	15568					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		ENST00000478272.1_1_13:101287253-101288829:-|nuORF;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	ENST00000478272.1_1_13:101287253-101288829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8080423389001	2	576.808042	1151.60153	1.2699	0.00073247	-1.4415	-0.00083145	-0.17161	-9.8986E-05	576.8077661908302	36.589	0.14447	36.591	36.543	36.687	0.0016747	1164	88	0.9204082	0.053290784	0.91888875	373.07047	0	21.600433						235	7	2	NaN	NaN	NaN	0.44258	1	14361	14361		21.835	0	1	28407			19566	2449	11207	11553	15569	15569					0.03179503999763256
PFLPKPLFF	9	Unmodified	_PFLPKPLFF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3258709513001	2	553.325871	1104.63719	0.54005	0.00029882	-1.0114	-0.00055965	-0.47138	-0.00026082	553.3249410860811	31.525	0.19308	31.525	31.452	31.646	0	1212	88	0.8910048	0.053319573	0.8910048	361.33395	0	21.622986						210	9	3	NaN	NaN	NaN	0.14301	1	13057	13057		29.598	9.1497	1	25699			19567	4050	11208	11554	15570	15570					0.08905586247419706
PFLPKPLFF	9	Unmodified	_PFLPKPLFF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3258709513001	2	553.325871	1104.63719	0.58114	0.00032156	-1.5165	-0.00083914	-0.9354	-0.00051758	553.3258434868704	31.572	0.16894	31.568	31.519	31.688	-0.0044155	1209	61	0.892844	0.036782026	0.8913246	362.07983	0	14.916412						192	8	3	NaN	NaN	NaN	0.043119	1	12710	12710		49.833	18.272	1	21977			19568	4050	11208	11554	15571	15571					0.08905586247419706
PFLQASPHF	9	Unmodified	_PFLQASPHF_					0	0	0		ENSG00000147689|ENST00000690554|FAM83A	ENSG00000147689|ENST00000690554|FAM83A	ENSG00000147689|ENST00000690554|FAM83A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2690843539	2	522.269084	1042.52362	2.1633	0.0011298	-2.4369	-0.0012727	-0.27352	-0.00014285	522.2681566071952	22.983	0.28907	22.983	22.887	23.176	0	1200	148	0.89836043	0.090237916	0.89836043	364.58426	0	36.62152						550	13	4	NaN	NaN	NaN	1.0592E-07	1	10324	10324		137.62	63.285	1	184210			19569	3607	11209	11555	15572	15572					0.004054911343473577
PFLQASPHF	9	Unmodified	_PFLQASPHF_					0	0	0		ENSG00000147689|ENST00000690554|FAM83A	ENSG00000147689|ENST00000690554|FAM83A	ENSG00000147689|ENST00000690554|FAM83A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2690843539	2	522.269084	1042.52362	1.8925	0.00098841	-2.1865	-0.0011419	-0.29393	-0.00015351	522.2681777445406	23.031	0.26509	23.017	22.945	23.21	-0.013294	1200	151	0.89836043	0.09208453	0.896841	364.58426	0	37.37094						595	12	4	NaN	NaN	NaN	0.010404	1	10116	10116		91.563	36.07	1	193470			19570	3607	11209	11555	15573	15573					0.004054911343473577
PFLQLHNRNLR	11	Unmodified	_PFLQLHNRNLR_					0	0	0			REV__SLIT2|p.Y1312Lfs*5|1|0.2|ENSG00000145147|chr4:20616993-20616994|-/T|frameshift_variant	REV__SLIT2|p.Y1312Lfs*5|1|0.2|ENSG00000145147|chr4:20616993-20616994|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.4020268266501	2	704.402027	1406.7895	0.73829	0.00052005	-8.2613	-0.0058193	-7.523	-0.0052992	704.396308000518	32.925	0.072426	32.925	32.9	32.973	0	1038	85	0.997351	0.051201344	0.997351	403.38892	0	20.708893						183	4	2	NaN	NaN	NaN	0.688	1	20119	20119		8.2448	0.65722	1	38017	+		19571	9922	11210	11556	15574	15574					0.10237754976878932
PFLTGLYLI	9	Unmodified	_PFLTGLYLI_					0	0	0			REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.6077455787	1	1036.60775	1035.60047	0.98861	0.0010248	1.1022	0.0011426	2.0908	0.0021674	1036.6082820752915	37.458	0.096268	37.458	37.41	37.506	0	69	52	1.5776473	0.030024648	1.5776473	320.1626	0	6.0930786						91	5	2	NaN	NaN	NaN	0.049695	1	10034	10034		47.04	2.7378	1	5950.1	+		19572	12921	11211	11557	15575	15575					0.08409289630844796
PFLVILQKT	9	Unmodified	_PFLVILQKT_					0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.8340601241501	2	529.83406	1057.65357	1.4312	0.00075828	-2.5384	-0.0013449	-1.1072	-0.00058664	529.8321301489306	24.647	0.072342	24.647	24.623	24.695	0	1263	43	0.85970795	0.025794804	0.85970795	348.83276	0	10.466431						89	4	3	NaN	NaN	NaN	0.6762	1	11002	11002		1.2418	0	1	8787.7	+		19573	13509	11212	11558	15576	15576					0.12704667413527204
PFLVILQKT	9	Unmodified						0	0	0			REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	REV__tr|U7SU85|U7SU85_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01059PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.83406	1057.65357	1.4312	0.00075828	-2.5384	-0.0013449	-1.1072	-0.00058664	529.8321301489306	24.647	0.072342	24.647	24.623	24.695	0	1263	43	0.85970795	0.025794804	0.85970795	348.83276		10.466431	-0.0057939	-0.0015915	0.0016811	NaN	1.2418	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8787.7	+		19574	13509	11212	11558							0.12704667413527204
PFMPPYWGLGF	11	Unmodified	_PFMPPYWGLGF_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.31517726675	2	656.315177	1310.6158	0.40338	0.00026474	-1.5163	-0.00099515	-1.1129	-0.00073041	656.3132664933446	38.227	0.12013	38.227	38.131	38.251	0	1137	52	0.9369253	0.031175435	0.9369253	379.21964	0	12.618225						82	6	2	NaN	NaN	NaN	0.04923	1	18958	18958		50.033	37.984	1	7307.3			19575	4776	11213	11559	15577	15577					-0.027081668436267137
PFMPPYWGLGF	11	Unmodified	_PFMPPYWGLGF_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.31517726675	2	656.315177	1310.6158	1.258	0.00082566	-3.3009	-0.0021664	-2.0429	-0.0013408	656.3129657159966	38.249	0.16831	38.252	38.156	38.325	0.0034256	1137	58	0.9369253	0.034839332	0.93540585	379.21964	0	14.101196						173	8	3	NaN	NaN	NaN	0.083017	1	18114	18114		41.46	31.1	1	11075			19576	4776	11213	11559	15578	15578					-0.027081668436267137
PFNHYINSIIQ	11	Unmodified	_PFNHYINSIIQ_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3485942726501	2	673.348594	1344.68264	1.0751	0.0007239	-7.6889	-0.0051773	-6.6138	-0.0044534	673.3433739102902	30.632	0.28963	30.632	30.511	30.801	0	1086	64	0.9680805	0.038452744	0.9680805	391.72614	0	15.55957						449	13	4	NaN	NaN	NaN	0.6085	1	19484	19484		13.463	0	1	56637	+		19577	8429	11214	11560	15579	15579					0.02408159971855639
PFPCPAAG	8	Unmodified	_PFPCPAAG_					0	0	0		ENST00000309060.7_1_20:39813568-39830807:-|nuORF;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENST00000309060.7_1_20:39813568-39830807:-|nuORF	ENST00000309060.7_1_20:39813568-39830807:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.17834943434997	2	380.178349	758.342146	1.8597	0.00070703	-1.3495	-0.00051305	0.51023	0.00019398	380.17776156245753	53.803	0.04818	53.803	53.779	53.828	0	1473	25	0.7302302	0.014855325	0.7302302	297.7944	0	6.0581055						34	3	2	NaN	NaN	NaN	0.84876	1	4194	4194		0.39566	0	1	2412.2			19578	6439	11215	11561	15580	15580					-0.04669145163029498
PFPGALCP	8	Unmodified	_PFPGALCP_					0	0	0		ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.3963725947001	1	801.396373	800.389096	1.1427	0.00091574	6.422	0.0051466	7.5647	0.0060623	801.4002935714592	38.444	0.072113	38.444	38.444	38.516	0	483	34	1.3321642	0.019710302	1.3321642	271.38696	0	4.015381						54	4	2	NaN	NaN	NaN	0.77734	1	4752	4752		12.26	0	1	2931.3			19579	7480	11216	11562	15581	15581					-0.01908285611887095
PFPPPPCL	8	Unmodified	_PFPPPPCL_					0	0	0		ENST00000372718.7_1_1:40888372-40888486:+|nuORF	ENST00000372718.7_1_1:40888372-40888486:+|nuORF	ENST00000372718.7_1_1:40888372-40888486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.4433227873	1	867.443323	866.436046	1.506	0.0013063	-4.6569	-0.0040396	-3.1509	-0.0027332	867.4392745622897	30.511	0.16891	30.511	30.439	30.608	0	384	112	1.3911947	0.06608713	1.3911947	283.048	0	13.445862						336	8	2	NaN	NaN	NaN	0.71635	1	5620	5620		18.034	1.6178	1	31141			19580	6665	11217	11563	15582	15582					-0.002514260607540564
PFQTPPPYE	9	Unmodified	_PFQTPPPYE_					0	0	0		tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5094880970998	1	1075.50949	1074.50221	1.3364	0.0014373	3.7683	0.0040529	5.1047	0.0054902	1075.513825222924	28.749	0.21717	28.74	28.668	28.885	-0.0083504	93	70	1.5635144	0.040660262	1.5619949	317.14346	0	8.247528						227	10	2	NaN	NaN	NaN	0.31737	1	11443	11443		17.799	1.3823	1	28284			19581	13988	11218	11564	15583	15583					-0.03205938685005094
PFQTPPPYE	9	Unmodified						0	0	0		tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	tr|U7T4U1|U7T4U1_FUSNUPutativemRNAinterferaseYoeBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00553PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1075.50949	1074.50221	1.5515	0.0016687	3.508	0.0037729	5.0595	0.0054415	1075.5134231463535	28.75	0.16894	28.75	28.677	28.846	0	96	70	1.5617468	0.04065597	1.5617468	316.78497		8.246643	0.0045585	-9.6885E-05	-0.00012401	NaN	17.799	217	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30946			19582	13988	11218	11564							-0.03205938685005094
PFRAETEKVL	10	Unmodified	_PFRAETEKVL_					0	0	0			REV__RNF216-MTHFD1L|2|fusion	REV__RNF216-MTHFD1L|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3324128922001	2	595.332413	1188.65027	2.2953	0.0013665	-4.8733	-0.0029012	-2.5779	-0.0015347	595.3295249518121	25.756	0.072388	25.745	25.721	25.793	-0.0116	1146	31	0.93142134	0.01834935	0.9299019	377.39517	0	7.434845						41	4	2	NaN	NaN	NaN	0.73444	1	15517	15517		5.6942	0	1	3531.1	+		19583	8404	11219	11565	15584	15584					0.06349372568843137
PFSLLLCIF	9	Unmodified	_PFSLLLCIF_					0	0	0		ENST00000417692.1_1_2:48134096-48134625:+|nuORF;ENST00000432064.1_1_2:48132867-48134625:+|nuORF	ENST00000417692.1_1_2:48134096-48134625:+|nuORF	ENST00000417692.1_1_2:48134096-48134625:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5849016465997	1	1052.5849	1051.57763	1.4795	0.0015573	4.1659	0.004385	5.6454	0.0059422	1052.5867779591074	34.805	0.16869	34.804	34.732	34.901	-0.0006485	99	94	1.5599792	0.054814458	1.5584598	316.51385	0	11.121643						255	8	2	NaN	NaN	NaN	0.12945	1	10487	10487		31.561	8.2266	1	35540			19584	6890	11220	11566	15585	15585					0.053899472417015204
PFSPLAPEPVL	11	Unmodified	_PFSPLAPEPVL_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8264320573	2	583.826432	1165.63831	1.2821	0.00074849	-0.17892	-0.00010446	1.1031	0.00064403	583.8264210936288	30.945	0.12068	30.94	30.891	31.012	-0.0050716	1230	94	0.8799654	0.057002902	0.878446	356.6269	0	23.101807						230	6	2	NaN	NaN	NaN	0.64343	1	14804	14804		11.17	2.2084	1	41482			19585	5789	11221	11567	15586	15586					0.06211755825665932
PFSPRKRSD	9	Unmodified	_PFSPRKRSD_					0	0	0			REV__ENSG00000122025|ENST00000241453|FLT3	REV__ENSG00000122025|ENST00000241453|FLT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2936220827002	2	545.293622	1088.57269	1.876	0.001023	2.9463	0.0016066	4.8223	0.0026296	545.797556489857	25.636	0.12063	25.636	25.564	25.684	0	1239	67	0.87444305	0.04050839	0.87444305	354.68204	0	16.430542						180	6	3	NaN	NaN	NaN	0.35794	1	12334	12334		15.463	2.4598	1	26296	+		19586	9337	11222	11568	15587	15587					0.03194779423347427
PFSPRKRSD	9	Unmodified						0	0	0			REV__ENSG00000122025|ENST00000241453|FLT3	REV__ENSG00000122025|ENST00000241453|FLT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.293622	1088.57269	1.876	0.001023	2.9463	0.0016066	4.8223	0.0026296	545.797556489857	25.636	0.12063	25.636	25.564	25.684	0	1239	67	0.87444305	0.04050839	0.87444305	354.68204		16.430542	-0.018203	-0.00020571	0.00075972	NaN	15.463	180	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26296	+		19587	9337	11222	11568							0.03194779423347427
PFSTPFGQH	9	Unmodified	_PFSTPFGQH_					0	0	0			REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.4788566707001	1	1017.47886	1016.47158	1.5369	0.0015638	-10.217	-0.010395	-8.68	-0.0088317	1017.4664436119963	26.891	0.19308	26.88	26.783	26.976	-0.010643	192	67	1.5050892	0.039026618	1.5035697	305.5135	0	7.921875						198	9	2	NaN	NaN	NaN	0.33629	1	9050	9050		16.584	2.1591	1	21215	+		19588	11799	11223	11569	15588	15588					-0.035996722793811387
PFSTPFGQH	9	Unmodified						0	0	0			REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1017.47886	1016.47158	2.0001	0.0020351	-11.298	-0.011496	-9.2981	-0.0094606	1017.4666285218385	26.891	0.24126	26.891	26.795	27.036	0	189	64	1.5068626	0.037250638	1.5068626	305.87347		7.5614014	0.0057262	-0.00045955	0.0016465	NaN	16.584	169	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19804	+		19589	11799	11223	11569							-0.035996722793811387
PFSTPFGQH	9	Unmodified						0	0	0			REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1017.47886	1016.47158	1.5369	0.0015638	-10.217	-0.010395	-8.68	-0.0088317	1017.4664436119963	26.891	0.19308	26.88	26.783	26.976	-0.010643	192	67	1.5050892	0.039026618	1.5035697	305.5135		7.921875	-0.0057262	0.00064065	-0.0016465	NaN	16.584	198	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21215	+		19590	11799	11223	11569							-0.035996722793811387
PFVAPPPP	8	Unmodified	_PFVAPPPP_					0	0	0			REV__nc|ENSG00000116604|Q14814-6|MEF2D	REV__nc|ENSG00000116604|Q14814-6|MEF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4556020331	1	821.455602	820.448326	1.2344	0.001014	-0.24812	-0.00020382	0.98627	0.00081017	821.4551253082103	26.673	0.12066	26.663	26.639	26.759	-0.010643	405	112	1.3786905	0.06618583	1.377171	280.74942	0	13.477722						245	6	3	NaN	NaN	NaN	0.77734	1	4920	4920		12.26	0	1	29360	+		19591	9221	11224	11570	15589	15589					0.030919336739430037
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7767422105001	2	554.776742	1107.53893	1.1567	0.0006417	-7.4776	-0.0041484	-6.321	-0.0035067	555.2726562299589	28.774	0.1448	28.774	28.677	28.822	0	1209	94	0.892844	0.057058394	0.892844	362.06818	0	23.138428						197	7	2	NaN	NaN	NaN	0.49672	1	13167	13167		9.746	4.2801	1	16876			19592	1916	11225	11571	15590	15590					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7767422105001	2	554.776742	1107.53893	1.9883	0.001103	-0.12533	-6.9528E-05	1.8629	0.0010335	554.7765346492899	28.122	0.2413	28.122	28.098	28.339	0	1209	103	0.892844	0.062583566	0.892844	362.06815	0	25.379028						669	11	5	NaN	NaN	NaN	1.096E-11	1	13170	13170		143.5	99.197	1	526910			19593	1916	11225	11571	15591	15591					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7767422105001	2	554.776742	1107.53893	1.7015	0.00094398	-0.18081	-0.00010031	1.5207	0.00084367	554.7768173831405	28.145	0.36201	28.137	28.064	28.426	-0.0089798	1209	115	0.892844	0.06995392	0.8913246	362.06815	0	28.367859						831	16	5	NaN	NaN	NaN	1.5841000000000002E-35	1	12795	12795		182.61	127.11	1	549690			19594	1916	11225	11571	15592	15592					-0.010536420684275072
PFVDHVFTF	9	Unmodified						0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.776742	1107.53893	1.1465	0.00063608	-1.8028	-0.0010001	-0.65623	-0.00036406	554.7760871097523	28.532	0.16886	28.523	28.475	28.644	-0.0083485	1218	46	0.8873258	0.02759695	0.8858064	359.83038		11.191193	-0.12519	0.0027539	-0.0035188	NaN	9.746	120	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11925			19595	1916	11225	11571							-0.010536420684275072
PFVGAFLGAL	10	Unmodified	_PFVGAFLGAL_					0	0	0			REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.2842031018501	2	496.284203	990.553853	1.5207	0.0007547	-1.2165	-0.00060374	0.30419	0.00015097	496.2833773591167	34.662	0.26532	34.662	34.541	34.806	0	1296	37	0.8394264	0.022136092	0.8394264	340.89975	0	8.989716						153	12	2	NaN	NaN	NaN	0.25514	1	8246	8246		30.791	6.9407	1	13866	+		19596	9911	11226	11572	15593	15593					0.05819849799581789
PFVGAFLGAL	10	Unmodified						0	0	0			REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.284203	990.553853	1.5207	0.0007547	-1.2165	-0.00060374	0.30419	0.00015097	496.2833773591167	34.662	0.26532	34.662	34.541	34.806	0	1296	37	0.8394264	0.022136092	0.8394264	340.89975		8.989716	-0.035169	-0.00032751	-0.00016267	NaN	30.791	153	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13866	+		19597	9911	11226	11572							0.05819849799581789
PFVGAFLGAL	10	Unmodified						0	0	0			REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.284203	990.553853	0.99242	0.00049252	-0.53669	-0.00026635	0.45573	0.00022617	496.2839668298757	34.733	0.2169	34.732	34.684	34.901	-0.0006485	1293	34	0.84127116	0.02029252	0.8397517	341.64893		8.240997	0.035169	0.00034727	0.00016267	NaN	30.791	125	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10152	+		19598	9911	11226	11572							0.05819849799581789
PFVGGGGG	8	Unmodified	_PFVGGGGG_					0	0	0		ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3147514553002	1	647.314751	646.307475	1.7981	0.001164	1.8187	0.0011773	3.6168	0.0023412	647.3166553563082	27.905	0.096537	27.905	27.881	27.977	0	786	58	1.1501974	0.034407496	1.1501974	235.25691	0	7.037567						127	5	3	NaN	NaN	NaN	0.84651	1	1948	1948		1.6704	0.59834	1	13844			19599	7005	11227	11573	15594	15594					-0.029826449794654764
PFVGGGGG	8	Unmodified	_PFVGGGGG_					0	0	0		ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3147514553002	1	647.314751	646.307475	1.2884	0.000834	-1.0126	-0.00065545	0.27584	0.00017856	647.3142166274363	28.097	0.26548	28.088	27.992	28.257	-0.0089798	1461	52	0.7376554	0.031552076	0.73613596	150.8772	0	6.453537						186	12	3	NaN	NaN	NaN	0.84945	1	1852	1852		0	0	1	18207			19600	7005	11227	11573	15595	15595					-0.029826449794654764
PFVGGGGG	8	Unmodified						0	0	0		ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	ENST00000441006.5_1_22:17517965-17528257:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	647.314751	646.307475	1.8213	0.001179	-1.9735	-0.0012775	-0.15222	-9.8535E-05	647.31332145307	27.929	0.12066	27.929	27.881	28.001	0	1461	82	0.7376554	0.050133884	0.7376554	150.8772		10.254181	-0.079588	-0.00022298	0.00075972	NaN	0	132	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19305			19601	7005	11227	11573							-0.029826449794654764
PFVPDSVL	8	Unmodified	_PFVPDSVL_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4716460278001	1	873.471646	872.46437	0.84519	0.00073825	-3.7275	-0.0032559	-2.8823	-0.0025176	873.4689397605331	29.038	0.16894	29.031	28.91	29.079	-0.0077229	393	70	1.3858368	0.041094303	1.3843174	281.92746	0	8.359985						175	8	2	NaN	NaN	NaN	0.14214	1	5563	5563		55.947	0	1	15954	+		19602	10682	11228	11574	15596	15596					0.023035951202018623
PFVPPPPA	8	Unmodified	_PFVPPPPA_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4556020331	1	821.455602	820.448326	1.9668	0.0016156	-1.0315	-0.00084733	0.93529	0.0007683	821.4548563544873	26.65	0.12068	26.65	26.625	26.746	0	408	115	1.3769034	0.0679636	1.3769034	280.3855	0	13.839783						240	6	3	NaN	NaN	NaN	0.71635	1	5028	5028		18.034	0	1	31995			19603	312	11229	11575	15597	15597					0.030919336739430037
PFVPPPPA	8	Unmodified						0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.455602	820.448326	1.2344	0.001014	-0.24812	-0.00020382	0.98627	0.00081017	821.4551253082103	26.673	0.12066	26.663	26.639	26.759	-0.010643	405	112	1.3786905	0.06618583	1.377171	280.74942		13.477722	0.0065785	0.00036314	0.00013383	NaN	18.034	245	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29360			19604	312	11229	11575							0.030919336739430037
PFYSSPELW	9	Unmodified	_PFYSSPELW_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.5251381613	1	1125.52514	1124.51786	1.2233	0.0013769	-1.7435	-0.0019623	-0.52019	-0.00058549	1125.5243692579747	30.028	0.096533	30.021	29.997	30.094	-0.0064106	78	46	1.5723488	0.026503444	1.5708294	318.75555	0	5.372925						109	5	2	NaN	NaN	NaN	0.030391	1	13432	13432		58.599	22.013	1	6768.2			19605	2150	11230	11576	15598	15598					-0.03941652167941356
PFYYEIKMAF	10	Unmodified	_PFYYEIKMAF_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.8826204451333	3	436.88262	1307.62603	1.5892	0.0006943	0.70349	0.00030734	2.2927	0.0010016	437.21698706733656	23.417	0.04825	23.417	23.393	23.441	0	1428	31	0.7580582	0.01853484	0.7580582	460.24228	0	11.253143						52	3	3	NaN	NaN	NaN	0.76534	1	18889	18889		3.5794	0.23582	1	3742.8			19606	4622	11231	11577	15599	15599					-0.015476039090344784
PGAAEAHP	8	Unmodified	_PGAAEAHP_					0	0	0		ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3576789025	1	749.357679	748.350402	-0.069402	-5.2007E-05	-1.0477	-0.0007851	-1.1171	-0.00083711	749.3577732625007	52.881	0.11987	52.881	52.833	52.952	-0.00045776	633	46	1.2423272	0.027024508	1.2408078	253.38214	0	5.5118713						117	6	3	NaN	NaN	NaN	0.84207	1	3944	3944		3.5732	0	1	8401.2			19607	7114	11232	11578	15600	15600					-0.03383874922053565
PGAAGHGG	8	Unmodified	_PGAAGHGG_					0	0	0			REV__ENST00000366847.8_1_6:167412887-167413552:+|nuORF	REV__ENST00000366847.8_1_6:167412887-167413552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2895993373	1	623.289599	622.282323	1.2274	0.00076503	-6.7648	-0.0042164	-5.5374	-0.0034514	623.2852677908201	21.007	0.096149	21.007	20.911	21.007	0	1158	52	0.92408	0.03121245	0.92408	189.15883	0	6.3891754						103	5	2	NaN	NaN	NaN	0.84876	1	1185	1185		0.39566	0	1	16807	+		19608	11857	11233	11579	15601	15601					-0.04392699782044929
PGAAGHGG	8	Unmodified						0	0	0			REV__ENST00000366847.8_1_6:167412887-167413552:+|nuORF	REV__ENST00000366847.8_1_6:167412887-167413552:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	623.289599	622.282323	1.2274	0.00076503	-6.7648	-0.0042164	-5.5374	-0.0034514	623.2852677908201	21.007	0.096149	21.007	20.911	21.007	0	1158	52	0.92408	0.03121245	0.92408	189.15883		6.3891754	0	0	0	NaN	0.39566	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16807	+		19609	11857	11233	11579							-0.04392699782044929
PGAAVMGP	8	Unmodified	_PGAAVMGP_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3494224021001	1	699.349422	698.342146	1.1505	0.0008046	-1.8168	-0.0012706	-0.66627	-0.00046595	699.3477596952899	26.625	0.12069	26.625	26.577	26.698	0	654	61	1.2297117	0.0360502	1.2297117	251.13205	0	7.3621674						110	6	2	NaN	NaN	NaN	0.84651	1	3191	3191		1.6704	1.2747	1	7048.2			19610	5536	11234	11580	15602	15602					-0.019091451630288248
PGADAGGR	8	Unmodified	_PGADAGGR_					0	0	0			REV__ENST00000372870.5_1_9:131103082-131105463:+|nuORF	REV__ENST00000372870.5_1_9:131103082-131105463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.3372778114	1	700.337278	699.330001	1.1314	0.00079234	-6.3906	-0.0044755	-5.2592	-0.0036832	700.3315269119552	29.135	0.1207	29.127	29.127	29.248	-0.0077229	1080	46	0.9717421	0.027457356	0.97022265	198.44406	0	5.607193						79	6	2	NaN	NaN	NaN	0.84887	1	3145	3145		0.32989	0	1	5004.1	+		19611	11916	11235	11581	15603	15603					-0.031690455818647933
PGAFHGLQ	8	Unmodified	_PGAFHGLQ_					0	0	0		nc|ENSG00000144771|Q9HBL6-2|LRTM1;ENSG00000144771|ENST00000273286|LRTM1;ENSG00000213171|ENST00000368820|LINGO4	nc|ENSG00000144771|Q9HBL6-2|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	826.4206135103001	1	826.420614	825.413337	2.8201	0.0023306	-10.664	-0.0088131	-7.8441	-0.0064825	826.4153327514699	28.676	0.048248	28.668	28.62	28.668	-0.0083504	462	28	1.3447032	0.01611805	1.3431838	273.80136	0	3.2818909						28	3	2	NaN	NaN	NaN	0.83849	1	4975	4975		4.0537	0.48046	1	1473.9			19612	3493	11236	11582	15604	15604					-0.006353091340088213
PGAGDSLG	8	Unmodified	_PGAGDSLG_					0	0	0		ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	ENST00000392563.5_1_17:73314377-73314581:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3151453858002	1	673.315145	672.307869	1.773	0.0011938	8.0392	0.0054129	9.8122	0.0066067	673.3200738241987	22.887	0.21691	22.887	22.814	23.031	0	717	118	1.1918083	0.07052767	1.1918083	243.57254	0	14.41391						309	10	2	NaN	NaN	NaN	0.84651	1	2649	2649		1.6704	0	1	50716			19613	6758	11237	11583	15605	15605					-0.04139270050268351
PGAGGGHV	8	Unmodified	_PGAGGGHV_					0	0	0			REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.16408796614996	2	326.164088	650.313623	1.1789	0.00038452	-7.244	-0.0023627	-6.0651	-0.0019782	326.16198015808595	41.231	0.072258	41.239	41.215	41.287	0.0074959	1533	64	0.6930556	0.03908205	0.6915362	283.4647	0	15.984833						113	4	2	NaN	NaN	NaN	0.84876	1	1971	1971		0.39566	0	1	33368	+		19614	10230	11238	11584	15606	15606					-0.025521267479575727
PGAGGGHV	8	Unmodified						0	0	0			REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	326.164088	650.313623	1.1699	0.00038157	-10.873	-0.0035464	-9.703	-0.0031648	326.16266858325554	41.329	0.096218	41.329	41.305	41.401	0	1536	64	0.69119483	0.03907782	0.69119483	282.7036		15.983093	0.04517	-0.0016305	-0.0001707	NaN	0.39566	228	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41027	+		19615	10230	11238	11584							-0.025521267479575727
PGAGGGHV	8	Unmodified						0	0	0			REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	REV__ENST00000525496.1_1_11:62105032-62105701:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	326.164088	650.313623	1.1789	0.00038452	-7.244	-0.0023627	-6.0651	-0.0019782	326.16198015808595	41.231	0.072258	41.239	41.215	41.287	0.0074959	1533	64	0.6930556	0.03908205	0.6915362	283.4647		15.984833	-0.04517	0.00073674	0.0001707	NaN	0.39566	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33368	+		19616	10230	11238	11584							-0.025521267479575727
PGAGGGKL	8	Unmodified	_PGAGGGKL_					0	0	0		ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.3726006851999	1	656.372601	655.365324	-0.53896	-0.00035376	1.351	0.00088679	0.81209	0.00053303	656.3732277314265	56.803	0.12011	56.802	56.778	56.898	-0.00056458	579	58	1.2747238	0.034169078	1.2732043	260.65244	0	6.9868164						119	6	2	NaN	NaN	NaN	0.84876	1	2095	2095		0.39566	0	1	8502.9			19617	2330	11239	11585	15607	15607					0.023856169459349985
PGAGGVAG	8	Unmodified	_PGAGGVAG_					0	0	0		ENST00000596657.1_1_19:6373528-6374597:+|nuORF;ENST00000245812.7_1_19:6372800-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2991013911001	1	585.299101	584.291825	1.61	0.00094236	-3.5702	-0.0020896	-1.9602	-0.0011473	585.2971572746175	24.623	0.072386	24.623	24.55	24.623	0	1215	73	0.8891654	0.044128895	0.8891654	182.2657	0	9.045776						136	4	2	NaN	NaN	NaN	0.83849	1	533	533		4.0537	0	1	18427			19618	6270	11240	11586	15608	15608					-0.01694931496524532
PGAGPAGP	8	Unmodified	_PGAGPAGP_					0	0	0		nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.3147514553001	1	623.314751	622.307475	1.1648	0.00072605	5.7914	0.0036098	6.9562	0.0043359	623.3186742416418	24.261	0.048231	24.261	24.237	24.285	0	726	67	1.1863867	0.03977847	1.1863867	242.85263	0	8.142609						87	3	2	NaN	NaN	NaN	0.84876	1	1188	1188		0.39566	0	1	11552			19619	7943	11241	11587	15609	15609					-0.01878644979467481
PGAGPAGP	8	Unmodified						0	0	0		nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	nc|ENSG00000130822|Q6P2M8-5|PNCK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	623.314751	622.307475	1.0265	0.00063986	9.2434	0.0057616	10.27	0.0064014	623.3211367978251	24.26	0.024132	24.248	24.248	24.272	-0.012749	726	61	1.1863867	0.036158323	1.1848673	242.85262		7.401581	-0.0065195	0.0011332	-0.00075972	NaN	0.39566	72	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9429.5			19620	7943	11241	11587							-0.01878644979467481
PGAGPRTL	8	Unmodified	_PGAGPRTL_					0	0	0		nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.4362635745	1	768.436264	767.428987	2.1323	0.0016386	-8.3023	-0.0063798	-6.17	-0.0047413	768.4293413960073	24.261	0.21715	24.261	24.237	24.454	0	483	313	1.3321642	0.18702185	1.3321642	271.58353	0	38.127472						966	10	5	NaN	NaN	NaN	0.45125	1	4328	4328		33.698	6.9667	1	1406400			19621	1735	11242	11588	15610	15610					0.03596977383040212
PGAGPRTL	8	Unmodified						0	0	0		nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	768.436264	767.428987	2.4746	0.0019016	-8.2017	-0.0063025	-5.7271	-0.0044009	768.4293441488744	24.26	0.21722	24.248	24.224	24.441	-0.012749	480	301	1.3339561	0.17979014	1.3324367	271.94885		36.653183	-0.0065195	3.2326E-05	0.00013621	NaN	33.698	815	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1197700			19622	1735	11242	11588							0.03596977383040212
PGAGSCLF	8	Unmodified	_PGAGSCLF_					0	0	0		ENST00000451809.5_1_7:79083511-79084300:+|nuORF	ENST00000451809.5_1_7:79083511-79084300:+|nuORF	ENST00000451809.5_1_7:79083511-79084300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3443370242001	1	751.344337	750.337061	1.0308	0.00077449	8.0658	0.0060602	9.0966	0.0068347	751.350600027269	30.849	0.096497	30.849	30.825	30.922	0	609	40	1.2567334	0.023398757	1.2567334	256.30814	0	4.7721405						69	5	2	NaN	NaN	NaN	0.82332	1	4057	4057		6.0903	0	1	5209.1			19623	7039	11243	11589	15611	15611					-0.04809449025640333
PGAGVVWF	8	Unmodified	_PGAGVVWF_					0	0	0			REV__nc|ENSG00000213889|Q8N819-2|PPM1N	REV__nc|ENSG00000213889|Q8N819-2|PPM1N	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.7212387043	2	416.721239	831.427924	2.2664	0.00094446	7.5886	0.0031623	9.855	0.0041068	416.7243301355582	18.194	0.095987	18.18	18.132	18.228	-0.01395	1386	34	0.78399014	0.020358562	0.7824707	319.21967	0	8.289459						66	5	3	NaN	NaN	NaN	0.83849	1	5037	5037		4.0537	0.4839	1	4392.9	+		19624	13228	11244	11590	15612	15612					0.0054676301413110195
PGAHASGA	8	Unmodified	_PGAHASGA_					0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3158140878	1	667.315814	666.308538	1.2872	0.00085898	-9.5446	-0.0063692	-8.2573	-0.0055102	667.3100580790403	37.504	0.24067	37.506	37.362	37.603	0.0028229	717	85	1.1918083	0.050627112	1.1902889	243.61635	0	10.348633						347	11	2	NaN	NaN	NaN	0.84727	1	2392	2392		1.2418	0	1	36703			19625	4348	11245	11591	15613	15613					-0.03796430610577772
PGAHRGGG	8	Unmodified	_PGAHRGGG_					0	0	0			REV__ENST00000377351.8_1_X:47060345-47060686:+|nuORF	REV__ENST00000377351.8_1_X:47060345-47060686:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3535965776002	1	708.353597	707.34632	1.612	0.0011419	4.0783	0.0028889	5.6903	0.0040307	708.3573158077912	25.346	0.12065	25.334	25.286	25.407	-0.012011	663	52	1.2243022	0.030667186	1.2227827	249.96606	0	6.2613373						114	6	2	NaN	NaN	NaN	0.84876	1	3292	3292		0.39566	0	1	9430.5	+		19626	11944	11246	11592	15614	15614					-0.01905919625085062
PGAKKGIL	8	Unmodified	_PGAKKGIL_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.5087002361003	1	783.5087	782.501424	2.04	0.0015984	1.9968	0.0015645	4.0368	0.0031629	783.5117688121212	56.924	0.04797	56.924	56.9	56.948	0	474	40	1.3375392	0.0232867	1.3375392	272.587	0	4.745758						51	3	2	NaN	NaN	NaN	0.84945	1	4537	4537		0	0	1	3094.3			19627	2795	11247	11593	15615	15615					0.10147311456626085
PGAPDALD	8	Unmodified	_PGAPDALD_					0	0	0			REV__ENST00000583732.1_1_17:17722402-17726886:-|nuORF	REV__ENST00000583732.1_1_17:17722402-17726886:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3570102005	1	755.35701	754.349734	1.4398	0.0010876	5.6397	0.00426	7.0795	0.0053476	755.3610845993858	24.381	0.38592	24.381	24.309	24.695	0	588	91	1.2693287	0.05397713	1.2693287	258.8522	0	11.007462						481	17	3	NaN	NaN	NaN	0.69631	1	4139	4139		19.285	1.5044	1	97450	+		19628	12874	11248	11594	15616	15616					-0.03726714361766881
PGAPGPVP	8	Unmodified	_PGAPGPVP_					0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3773517121	1	691.377352	690.370075	1.5802	0.0010925	-11.502	-0.0079521	-9.9216	-0.0068596	691.3697286998835	27.639	0.16889	27.639	27.591	27.76	0	624	106	1.247731	0.06307769	1.247731	254.86858	0	12.8845825						196	8	2	NaN	NaN	NaN	0.83849	1	3044	3044		4.0537	0	1	21705	+		19629	10465	11249	11595	15617	15617					0.012505010887025492
PGAPQGDP	8	Unmodified	_PGAPQGDP_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3416944873001	1	738.341694	737.334418	1.2815	0.00094617	8.4562	0.0062436	9.7377	0.0071898	738.3476871704341	29.666	0.24128	29.659	29.61	29.852	-0.0070648	657	49	1.2279087	0.028852463	1.2263893	250.50864	0	5.886261						143	11	2	NaN	NaN	NaN	0.84512	1	3797	3797		2.4615	0	1	12774			19630	4894	11250	11596	15618	15618					-0.04475581158953901
PGAPQGLG	8	Unmodified	_PGAPQGLG_					0	0	0			REV__nc|ENSG00000274211|O14512|SOCS7	REV__nc|ENSG00000274211|O14512|SOCS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3675153073002	1	696.367515	695.360239	1.6355	0.0011389	5.9809	0.0041649	7.6164	0.0053038	696.3717432493671	28.219	0.072405	28.219	28.194	28.267	0	654	43	1.2297117	0.025243282	1.2297117	251.15271	0	5.155594						50	4	2	NaN	NaN	NaN	0.84876	1	3150	3150		0.39566	0	1	3522.6	+		19631	11419	11251	11597	15619	15619					0.00037313083350909437
PGAPQGLG	8	Unmodified						0	0	0			REV__nc|ENSG00000274211|O14512|SOCS7	REV__nc|ENSG00000274211|O14512|SOCS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	696.367515	695.360239	1.6355	0.0011389	5.9809	0.0041649	7.6164	0.0053038	696.3717432493671	28.219	0.072405	28.219	28.194	28.267	0	654	43	1.2297117	0.025243282	1.2297117	251.15271		5.155594	0	0	0	NaN	0.39566	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3522.6	+		19632	11419	11251	11597							0.00037313083350909437
PGARGPVP	8	Unmodified	_PGARGPVP_					0	0	0			REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.7164876774	2	375.716488	749.418422	2.0843	0.0007831	-5.1977	-0.0019529	-3.1134	-0.0011698	375.71456430889157	23.031	0.45796	23.017	22.776	23.234	-0.013294	1449	73	0.74507743	0.04450792	0.743558	303.91336	0	18.154541						493	20	3	NaN	NaN	NaN	0.84207	1	3969	3969		3.5732	0	1	256990	+		19633	12215	11252	11598	15620	15620					0.033689947286120514
PGARGPVP	8	Unmodified						0	0	0			REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	375.716488	749.418422	2.3853	0.00089618	-5.4562	-0.00205	-3.0709	-0.0011538	375.7146352872923	22.742	0.48204	22.742	22.621	23.103	0	1437	88	0.7524962	0.05379498	0.7524962	306.93945		21.942688	-0.13767	-8.6187E-05	0.0044691	NaN	3.5732	1021	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749640	+		19634	12215	11252	11598							0.033689947286120514
PGARGPVP	8	Unmodified						0	0	0			REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	REV__ENST00000447648.6_1_7:97880760-97881562:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	375.716488	749.418422	2.0843	0.0007831	-5.1977	-0.0019529	-3.1134	-0.0011698	375.71456430889157	23.031	0.45796	23.017	22.776	23.234	-0.013294	1449	73	0.74507743	0.04450792	0.743558	303.91336		18.154541	0.13767	0.00010802	-0.0044691	NaN	3.5732	493	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256990	+		19635	12215	11252	11598							0.033689947286120514
PGARHPGLRGL	11	Unmodified	_PGARHPGLRGL_					0	0	0			REV__ENST00000284000.8_1_19:33864724-33864793:+|nuORF	REV__ENST00000284000.8_1_19:33864724-33864793:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.55622954270007	3	377.55623	1129.64686	1.6539	0.00062443	4.2524	0.0016055	5.9063	0.00223	377.55788473695446	22.139	0.096531	22.139	22.115	22.212	0	1488	31	0.7209441	0.018577218	0.7209441	438.42813	0	11.297333						77	5	2	NaN	NaN	NaN	0.65577	1	14085	14085		7.2894	1.5952	1	7499.2	+		19636	11611	11253	11599	15621	15621					0.08722167305518269
PGASLRHV	8	Unmodified	_PGASLRHV_					0	0	0			REV__ENST00000435439.5_1_22:46505154-46505768:+|nuORF	REV__ENST00000435439.5_1_22:46505154-46505768:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	418.74049408995	2	418.740494	835.466435	1.1261	0.00047156	-0.011047	-4.6258E-06	1.1151	0.00046693	418.74050760362803	12.894	0.11984	12.885	12.837	12.957	-0.00947	1533	37	0.6930556	0.022328973	0.6915362	282.17148	0	9.091034						81	6	2	NaN	NaN	NaN	0.84512	1	5083	5083		2.4615	0	1	6078.6	+		19637	12171	11254	11600	15622	15622					0.042120686486555314
PGAVGDGP	8	Unmodified	_PGAVGDGP_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515003	2	335.163754	668.312954	1.7542	0.00058794	5.7745	0.0019354	7.5287	0.0025233	335.16586189647836	39.018	0.26427	39.023	38.759	39.023	0.0046806	1524	76	0.698637	0.046511114	0.69711757	285.58942	0	19.012848						331	12	2	NaN	NaN	NaN	0.84887	1	2454	2454		0.32989	0	1	78782			19638	5896	11255	11601	15623	15623					-0.034469661876528335
PGAVGDGP	8	Unmodified						0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	0.82059	0.00027503	9.2838	0.0031116	10.104	0.0033866	335.1673647012863	39.02	0.048054	39.02	38.996	39.044	0	1530	73	0.6949163	0.044638515	0.6949163	284.06845		18.247375	-0.0012499	0.0016641	-0.0011006	NaN	0.32989	85	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19494			19639	5896	11255	11601							-0.034469661876528335
PGAYACPE	8	Unmodified	_PGAYACPE_					0	0	0			REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.3341662683999	1	807.334166	806.32689	1.3669	0.0011035	-3.0136	-0.002433	-1.6467	-0.0013294	807.332670842665	28.99	0.26546	28.982	28.934	29.2	-0.0077229	417	70	1.3715409	0.04112935	1.3700215	279.37408	0	8.377777						335	12	3	NaN	NaN	NaN	0.84651	1	4742	4742		1.6704	0	1	42016	+		19640	8500	11256	11602	15624	15624					-0.08402056750890097
PGCAAAAA	8	Unmodified	_PGCAAAAA_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.1470493059499	2	316.147049	630.279546	1.8375	0.00058091	-2.4653	-0.0007794	-0.62783	-0.00019849	316.14658757098755	35.022	0.16891	35.022	34.974	35.143	-4.5776E-05	1482	136	0.72465914	0.08366555	0.7231397	296.584	0	34.242096						899	8	4	NaN	NaN	NaN	0.84876	1	1378	1378		0.39566	0	1	280060			19641	5233	11257	11603	15625	15625					-0.05038291231232961
PGCLAGPG	8	Unmodified	_PGCLAGPG_					0	0	0			REV__ENST00000261497.8_1_17:20903240-20903354:-|nuORF	REV__ENST00000261497.8_1_17:20903240-20903354:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	336.16269937015005	2	336.162699	670.310846	1.1188	0.00037611	7.6152	0.0025599	8.734	0.0029361	336.16546522833454	41.713	0.21647	41.721	41.697	41.913	0.0082588	1518	67	0.7023569	0.040914237	0.70083743	287.09293	0	16.723938						267	10	2	NaN	NaN	NaN	0.84876	1	2525	2525		0.39566	0	1	52067	+		19642	11546	11258	11604	15626	15626					-0.03749718197116181
PGDGASLV	8	Unmodified	_PGDGASLV_					0	0	0			REV__nc|ENSG00000130244|Q17RN3-2|FAM98C	REV__nc|ENSG00000130244|Q17RN3-2|FAM98C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3620955784002	1	715.362096	714.354819	0.93141	0.0006663	6.5443	0.0046816	7.4757	0.0053478	715.3667752873316	28.145	0.16896	28.137	28.112	28.281	-0.0089798	600	52	1.2621325	0.030591846	1.2606131	257.64188	0	6.2447968						161	8	3	NaN	NaN	NaN	0.82332	1	3435	3435		6.0903	0	1	15087	+		19643	9479	11259	11605	15627	15627					-0.013784104991259483
PGDKTRAG	8	Unmodified	_PGDKTRAG_					0	0	0		ENST00000309061.11_1_19:5790104-5790257:-|nuORF	ENST00000309061.11_1_19:5790104-5790257:-|nuORF	ENST00000309061.11_1_19:5790104-5790257:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.21430912920005	2	401.214309	800.414065	0.89347	0.00035847	2.0928	0.00083968	2.9863	0.0011982	401.2151337266574	24.261	0.072357	24.261	24.237	24.309	0	1434	43	0.75435036	0.025960147	0.75435036	307.34415	0	10.576904						99	4	3	NaN	NaN	NaN	0.79607	1	4753	4753		9.746	0	1	15751			19644	6440	11260	11606	15628	15628					0.005874855150523217
PGEAGLVF	8	Unmodified	_PGEAGLVF_					0	0	0			REV__ENST00000330394.2_1_3:184299882-184299981:+|nuORF	REV__ENST00000330394.2_1_3:184299882-184299981:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4141311489001	1	789.414131	788.406855	1.0572	0.00083459	4.7312	0.0037349	5.7884	0.0045694	789.4174762370352	33.792	0.096584	33.79	33.766	33.863	-0.0018501	480	55	1.3339561	0.0322448	1.3324367	271.82166	0	6.5705566						106	5	2	NaN	NaN	NaN	0.76633	1	4516	4516		13.737	0	1	10217	+		19645	11746	11261	11607	15629	15629					0.0041875291461792585
PGEAGLVF	8	Unmodified						0	0	0			REV__ENST00000330394.2_1_3:184299882-184299981:+|nuORF	REV__ENST00000330394.2_1_3:184299882-184299981:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.414131	788.406855	1.0572	0.00083459	4.7312	0.0037349	5.7884	0.0045694	789.4174762370352	33.792	0.096584	33.79	33.766	33.863	-0.0018501	480	55	1.3339561	0.0322448	1.3324367	271.82166		6.5705566	-0.0015406	-0.00016749	-0.00075972	NaN	13.737	106	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10217	+		19646	11746	11261	11607							0.0041875291461792585
PGEGHLDNI	9	Unmodified	_PGEGHLDNI_					0	0	0			REV__ENST00000531005.5_1_11:65638277-65638940:-|nuORF	REV__ENST00000531005.5_1_11:65638277-65638940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.4530358507001	1	951.453036	950.445759	2.1028	0.0020008	-11.963	-0.011382	-9.8601	-0.0093814	951.4387833960852	25.443	0.048241	25.431	25.382	25.431	-0.012011	321	70	1.4286518	0.04100263	1.4271324	290.26718	0	8.330719						82	3	2	NaN	NaN	NaN	0.63698	1	6961	6961		3.9685	0.39529	1	7566.5	+		19647	10659	11262	11608	15630	15630					-0.031445665216665475
PGEGPGVG	8	Unmodified	_PGEGPGVG_					0	0	0		ENST00000562588.5_1_16:53737575-53737698:-|nuORF	ENST00000562588.5_1_16:53737575-53737698:-|nuORF	ENST00000562588.5_1_16:53737575-53737698:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515003	2	335.163754	668.312954	0.67286	0.00022552	6.3835	0.0021395	7.0564	0.0023651	335.1657684073106	45.285	0.11979	45.296	45.248	45.368	0.011345	1533	37	0.6930556	0.022328973	0.6915362	283.30786	0	9.127655						84	6	2	NaN	NaN	NaN	0.84692	1	2452	2452		1.4396	0	1	6130.6			19648	7604	11263	11609	15631	15631					-0.034469661876528335
PGEGSGEF	8	Unmodified	_PGEGSGEF_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	779.3206246942	1	779.320625	778.313348	2.0852	0.001625	6.1457	0.0047895	8.2309	0.0064145	779.3249810551006	23.441	0.19302	23.427	23.403	23.596	-0.013294	540	55	1.2980826	0.032324076	1.2965631	264.57037	0	6.5881653						170	9	2	NaN	NaN	NaN	0.76633	1	4394	4394		13.737	0	1	14181			19649	5767	11264	11610	15632	15632					-0.08467591258477114
PGELYRRT	8	Unmodified	_PGELYRRT_					0	0	0		nc|ENSG00000149929|Q9BW71-2|HIRIP3;ENSG00000149929|ENST00000279392|HIRIP3	nc|ENSG00000149929|Q9BW71-2|HIRIP3	nc|ENSG00000149929|Q9BW71-2|HIRIP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.26961567015	2	496.269616	990.524678	1.6447	0.00081624	1.197	0.00059404	2.8418	0.0014103	496.2701064327852	20.357	0.21636	20.357	20.285	20.501	0	1548	124	0.6837494	0.07622856	0.6837494	277.67783	0	30.957214						382	10	4	NaN	NaN	NaN	0.67765	1	8235	8235		20.449	4.986	1	67908			19650	3700	11265	11611	15633	15633					0.029037055032858916
PGELYRRT	8	Unmodified						0	0	0		nc|ENSG00000149929|Q9BW71-2|HIRIP3;ENSG00000149929|ENST00000279392|HIRIP3	nc|ENSG00000149929|Q9BW71-2|HIRIP3	nc|ENSG00000149929|Q9BW71-2|HIRIP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.269616	990.524678	0.77175	0.000383	1.7259	0.00085653	2.4977	0.0012395	496.27086069923246	20.646	0.16875	20.632	20.535	20.704	-0.014086	1482	49	0.72465914	0.02971381	0.7231397	294.2917		12.067078	0.13738	0.00037299	0.019695	NaN	20.449	171	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16724			19651	3700	11265	11611							0.029037055032858916
PGEPGAKGDRG	11	Unmodified	_PGEPGAKGDRG_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;ENST00000461720.5_1_1:103466712-103471647:-|nuORF	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.7596120898501	2	520.759612	1039.50467	1.9757	0.0010289	-5.9995	-0.0031243	-4.0238	-0.0020954	520.7570175188522	16.179	0.11991	16.166	16.118	16.238	-0.012993	1302	58	0.8357362	0.03505075	0.8342168	339.18216	0	14.225311						140	6	3	NaN	NaN	NaN	0.63477	1	9972	9972		11.739	2.7769	1	21818			19652	641	11266	11612	15634	15634					-0.013500902273335669
PGGAEAFT	8	Unmodified	_PGGAEAFT_					0	0	0			REV__ENST00000591097.5_1_19:1271671-1272439:+|nuORF	REV__ENST00000591097.5_1_19:1271671-1272439:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3464455142001	1	749.346446	748.339169	2.3188	0.0017376	5.6349	0.0042225	7.9537	0.0059601	749.3505075801887	25.901	0.21722	25.89	25.841	26.059	-0.0116	564	94	1.2837118	0.055749416	1.2821923	261.82288	0	11.370529						334	10	3	NaN	NaN	NaN	0.76633	1	3943	3943		13.737	0	1	44732	+		19653	12915	11267	11613	15635	15635					-0.04506697016176986
PGGAEAFT	8	Unmodified						0	0	0			REV__ENST00000591097.5_1_19:1271671-1272439:+|nuORF	REV__ENST00000591097.5_1_19:1271671-1272439:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	749.346446	748.339169	2.3188	0.0017376	5.6349	0.0042225	7.9537	0.0059601	749.3505075801887	25.901	0.21722	25.89	25.841	26.059	-0.0116	564	94	1.2837118	0.055749416	1.2821923	261.82288		11.370529	-0.0059001	0.00046932	0.00013889	NaN	13.737	334	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44732	+		19654	12915	11267	11613							-0.04506697016176986
PGGGAGRS	8	Unmodified	_PGGGAGRS_					0	0	0		ENST00000247706.3_1_19:17411946-17414055:-|nuORF	REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	REV__ENST00000287878.8_2_7:151292482-151372578:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.3267131251	1	658.326713	657.319437	1.3001	0.00085591	-6.0421	-0.0039776	-4.7419	-0.0031217	658.3227206171898	30.342	0.12067	30.342	30.318	30.439	0	1149	58	0.92958635	0.034865677	0.92958635	190.06804	0	7.1288147						125	6	2	NaN	NaN	NaN	0.84692	1	2224	2224		1.4396	0	1	13078			19655	6273	11268	11614	15636	15636					-0.022930282362949583
PGGGGAGF	8	Unmodified	_PGGGGAGF_					0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.2834513269	1	619.283451	618.276175	1.4218	0.00088049	-7.719	-0.0047803	-6.2972	-0.0038998	619.2785472956067	53.242	0.28798	53.242	53.17	53.458	0	819	76	1.1302601	0.045355678	1.1302601	231.39601	0	9.285568						296	13	3	NaN	NaN	NaN	0.84945	1	1109	1109		0	0	1	50355	+		19656	9778	11269	11615	15637	15637					-0.0482321801357557
PGGGGGKK	8	Unmodified	_PGGGGGKK_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3678496583001	1	657.36785	656.360573	0.89763	0.00059007	6.1869	0.0040671	7.0845	0.0046571	657.3734866856846	40.486	0.28848	40.493	40.253	40.541	0.0067596	756	52	1.1683017	0.030752778	1.1667823	238.88408	0	6.28804						196	13	3	NaN	NaN	NaN	0.84876	1	2122	2122		0.39566	0.065779	1	14173	+		19657	10010	11270	11616	15638	15638					0.018647328031875077
PGGGHGRA	8	Unmodified	_PGGGHGRA_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3535965776	1	708.353597	707.34632	1.2198	0.00086402	8.1038	0.0057404	9.3236	0.0066044	708.3614445172651	30.487	0.024132	30.487	30.487	30.511	0	1044	37	0.99369496	0.021938622	0.99369496	202.88293	0	4.4792175						41	2	2	NaN	NaN	NaN	0.84876	1	3354	3354		0.39566	0	1	2624			19658	3844	11271	11617	15639	15639					-0.019059196251077992
PGGGHGRA	8	Unmodified						0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.353597	707.34632	3.7557	0.0026603	10.865	0.0076966	14.621	0.010357	708.3656284420844	30.462	0.048264	30.456	30.432	30.48	-0.0057545	1041	13	0.9955231	0.007312119	0.99400365	203.25616		1.4929199	-0.015437	0.0010707	0.00015434	NaN	0.39566	15	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624.19			19659	3844	11271	11617							-0.019059196251077992
PGGGHGSGG	9	Unmodified	_PGGGHGSGG_					0	0	0		ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	ENSG00000133124|ENST00000372129|IRS4	ENSG00000133124|ENST00000372129|IRS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.2903276188001	1	682.290328	681.283051	1.7682	0.0012064	-6.0226	-0.0041092	-4.2544	-0.0029027	682.2863107054915	30.318	0.072397	30.318	30.246	30.318	0	1107	52	0.9552588	0.031158626	0.9552588	195.17712	0	6.366272						65	4	2	NaN	NaN	NaN	0.67989	1	2862	2862		0.92586	0.5302	1	4601.6			19660	2813	11272	11618	15640	15640					-0.07033905132993823
PGGGPDNG	8	Unmodified	_PGGGPDNG_					0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.2790942305	1	670.279094	669.271818	1.3674	0.00091652	-3.548	-0.0023781	-2.1806	-0.0014616	670.2765383954733	29.57	0.072416	29.57	29.546	29.618	0	702	40	1.2008407	0.023476481	1.2008407	245.44075	0	4.7983856						84	4	2	NaN	NaN	NaN	0.84945	1	2578	2578		0	0	1	7083.7			19661	13689	11273	11619	15641	15641					-0.076047272271353
PGGGPDNG	8	Unmodified	_PGGGPDNG_					0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.2790942305	1	670.279094	669.271818	1.0375	0.00069544	-5.8531	-0.0039232	-4.8155	-0.0032277	670.2753923220993	29.569	0.14478	29.562	29.514	29.659	-0.0070667	1140	49	0.93509084	0.029352665	0.9335714	191.12393	0	5.999405						142	7	2	NaN	NaN	NaN	0.84945	1	2484	2484		0	0	1	18101			19662	13689	11273	11619	15642	15642					-0.076047272271353
PGGGPDNG	8	Unmodified						0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	670.279094	669.271818	1.3627	0.00091339	-2.5179	-0.0016877	-1.1552	-0.00077432	670.278033881135	29.57	0.14477	29.57	29.522	29.667	0	1140	76	0.93509084	0.045841277	0.93509084	191.12392		9.369537	0.0039531	0.0018272	0.00075972	NaN	0	168	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17904			19663	13689	11273	11619							-0.076047272271353
PGGGSGPV	8	Unmodified	_PGGGSGPV_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3096660774002	1	627.309666	626.30239	1.1844	0.00074297	7.3272	0.0045964	8.5116	0.0053394	627.3150486223078	32.225	0.12063	32.225	32.128	32.249	0	1140	112	0.93509084	0.067837775	0.93509084	191.3863	0	13.88446						218	6	2	NaN	NaN	NaN	0.84876	1	1273	1273		0.39566	0	1	21245	+		19664	11100	11274	11620	15643	15643					-0.025709488420829985
PGGGSGPV	8	Unmodified						0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	627.309666	626.30239	1.1844	0.00074297	7.3272	0.0045964	8.5116	0.0053394	627.3150486223078	32.225	0.12063	32.225	32.128	32.249	0	1140	112	0.93509084	0.067837775	0.93509084	191.3863		13.88446	0	0	0	NaN	0.39566	218	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21245	+		19665	11100	11274	11620							-0.025709488420829985
PGGGTHGG	8	Unmodified	_PGGGTHGG_					0	0	0		ENST00000303746.9_1_16:3013978-3014224:+|nuORF	ENST00000303746.9_1_16:3013978-3014224:+|nuORF	ENST00000303746.9_1_16:3013978-3014224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.2845139594002	1	639.284514	638.277237	2.044	0.0013067	1.5683	0.0010026	3.6123	0.0023093	639.2896052885153	29.884	0.048271	29.884	29.86	29.908	0	1143	46	0.9332562	0.027513683	0.9332562	190.93434	0	5.628998						55	3	2	NaN	NaN	NaN	0.84887	1	1695	1695		0.32989	0	1	3505			19666	6417	11275	11621	15644	15644					-0.0563700364465376
PGGGTHGG	8	Unmodified						0	0	0		ENST00000303746.9_1_16:3013978-3014224:+|nuORF	ENST00000303746.9_1_16:3013978-3014224:+|nuORF	ENST00000303746.9_1_16:3013978-3014224:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	639.284514	638.277237	1.9187	0.0012266	0.039675	2.5364E-05	1.9584	0.001252	639.2875618639611	29.907	0.16891	29.9	29.779	29.948	-0.0070667	1131	58	0.94059354	0.034839332	0.93907416	192.43549		7.127777	0.0080729	-0.00066907	0.002909	NaN	0.32989	85	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4690.6			19667	6417	11275	11621							-0.0563700364465376
PGGHAATA	8	Unmodified	_PGGHAATA_					0	0	0			REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF	REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.3314641519999	1	681.331464	680.324188	1.6628	0.0011329	-4.8854	-0.0033286	-3.2226	-0.0021957	681.3280034742598	47.228	0.21561	47.228	47.108	47.324	0	717	49	1.1918083	0.028911233	1.1918083	243.51535	0	5.907242						142	10	2	NaN	NaN	NaN	0.84945	1	2851	2851		0	0	1	12652	+		19668	11748	11276	11622	15645	15645					-0.02876144093545463
PGGHGGLA	8	Unmodified	_PGGHGGLA_					0	0	0			REV__ENST00000423600.1_1_3:195384570-195384792:-|nuORF	REV__ENST00000423600.1_1_3:195384570-195384792:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3365495298999	1	665.33655	664.329273	1.569	0.0010439	-7.1374	-0.0047487	-5.5684	-0.0037049	665.3332604327011	23.971	0.12063	23.971	23.923	24.044	0	726	52	1.1863867	0.030726314	1.1863867	242.52263	0	6.2811127						148	6	3	NaN	NaN	NaN	0.84876	1	2432	2432		0.39566	0	1	11931	+		19669	12118	11277	11623	15646	15646					-0.016318402309252633
PGGKAAAH	8	Unmodified	_PGGKAAAH_					0	0	0		ENST00000592675.1_1_19:11304063-11306346:-|nuORF	ENST00000592675.1_1_19:11304063-11306346:-|nuORF	ENST00000592675.1_1_19:11304063-11306346:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	1.0169	0.00072032	-9.7814	-0.006929	-8.7646	-0.0062086	708.3716120296368	32.152	0.31372	32.152	32.08	32.394	0	663	112	1.2243022	0.06678212	1.2243022	249.96597	0	13.634903						496	14	4	NaN	NaN	NaN	0.79379	1	3362	3362		10.052	3.9612	1	102290			19670	7739	11278	11624	15647	15647					0.006081351774582799
PGGKGMGL	8	Unmodified	_PGGKGMGL_					0	0	0			REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.3759715036	1	716.375972	715.368695	1.5037	0.0010772	8.4292	0.0060385	9.9329	0.0071157	716.3816904155788	27.76	0.2172	27.76	27.712	27.929	0	624	103	1.247731	0.061272144	1.247731	254.69525	0	12.507294						408	10	3	NaN	NaN	NaN	0.84692	1	3524	3524		1.4396	0	1	113700	+		19671	12270	11279	11625	15648	15648					-0.0003745627170701482
PGGKGMGL	8	Unmodified						0	0	0			REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	716.375972	715.368695	1.5037	0.0010772	8.4292	0.0060385	9.9329	0.0071157	716.3816904155788	27.76	0.2172	27.76	27.712	27.929	0	624	103	1.247731	0.061272144	1.247731	254.69525		12.507294	-0.0068716	-0.00026659	0.00075972	NaN	1.4396	408	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113700	+		19672	12270	11279	11625							-0.0003745627170701482
PGGKGMGL	8	Unmodified						0	0	0			REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	REV__ENST00000462297.1_1_2:74754523-74754670:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	716.375972	715.368695	1.1054	0.00079191	9.6795	0.0069342	10.785	0.0077261	716.3825371120063	27.783	0.24134	27.774	27.726	27.967	-0.009552	624	109	1.247731	0.06488335	1.2462115	254.69524		13.244446	0.0068716	0.0006291	-0.00075972	NaN	1.4396	443	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117700	+		19673	12270	11279	11625							-0.0003745627170701482
PGGKGPCG	8	Unmodified	_PGGKGPCG_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3133712468001	1	672.313371	671.306095	1.673	0.0011248	7.6839	0.005166	9.3569	0.0062908	672.3190258774354	21.681	0.048227	21.681	21.657	21.705	0	1107	28	0.9552588	0.016488612	0.9552588	195.23418	0	3.3699036						41	3	2	NaN	NaN	NaN	0.84876	1	2626	2626		0.39566	0	1	2967.5			19674	3184	11280	11626	15649	15649					-0.04270602339886409
PGGKGPCG	8	Unmodified						0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	672.313371	671.306095	1.7684	0.0011889	5.6625	0.003807	7.431	0.0049959	672.3166420535152	22.018	0.072205	22.004	22.004	22.077	-0.013895	1104	46	0.9570911	0.02748102	0.95557165	195.60866		5.6165314	0.16157	-0.00070676	0.00015641	NaN	0.39566	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3108.1			19675	3184	11280	11626							-0.04270602339886409
PGGLGCPV	8	Unmodified	_PGGLGCPV_					0	0	0		ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3494224021001	1	699.349422	698.342146	1.4138	0.00098871	-3.9941	-0.0027933	-2.5804	-0.0018046	699.3457663867192	25.346	0.19302	25.346	25.274	25.467	0	681	109	1.2134778	0.06493187	1.2134778	247.81677	0	13.2604065						272	9	2	NaN	NaN	NaN	0.81214	1	3190	3190		7.5902	0	1	31360			19676	7046	11281	11627	15650	15650					-0.019091451630288248
PGGLPAPC	8	Unmodified	_PGGLPAPC_					0	0	0		nc|ENSG00000178773|Q9UBL6|CPNE7;ENSG00000178773|ENST00000319518|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3494224021	1	711.349422	710.342146	1.3017	0.00092598	4.1906	0.002981	5.4924	0.003907	711.3512782220861	55.1	0.048161	55.1	55.076	55.124	0	636	118	1.2405256	0.07018888	1.2405256	253.25812	0	14.329346						138	3	3	NaN	NaN	NaN	0.84651	1	3425	3425		1.6704	0	1	13036			19677	5127	11282	11628	15651	15651					-0.02461145163033507
PGGPAAAL	8	Unmodified	_PGGPAAAL_					0	0	0			REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016478998	1	653.361702	652.354425	1.53	0.00099967	-7.0685	-0.0046183	-5.5384	-0.0036186	653.3570359337367	53.314	0.19205	53.314	53.242	53.434	0	657	91	1.2279087	0.054121614	1.2279087	251.10353	0	11.067673						290	9	2	NaN	NaN	NaN	0.84945	1	2125	2125		0	0	1	49087	+		19678	12804	11283	11629	15652	15652					0.01434214571645498
PGGPAAAL	8	Unmodified	_PGGPAAAL_					0	0	0			REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016478998	1	653.361702	652.354425	0.63186	0.00041284	-2.8874	-0.0018865	-2.2555	-0.0014737	653.3613409100363	40.921	0.14415	40.921	40.849	40.993	0	762	37	1.1646824	0.021718264	1.1646824	238.17392	0	4.4413147						138	7	4	NaN	NaN	NaN	0.84945	1	2126	2126		0	0	1	15123	+		19679	12804	11283	11629	15653	15653					0.01434214571645498
PGGPAAAL	8	Unmodified	_PGGPAAAL_					0	0	0			REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016478998	1	653.361702	652.354425	0.52749	0.00034464	-2.3595	-0.0015416	-1.832	-0.001197	653.3601769401342	39.093	0.28947	39.093	39.044	39.334	0	783	76	1.1520087	0.045258403	1.1520087	235.58218	0	9.2552185						370	13	3	NaN	NaN	NaN	0.84945	1	2127	2127		0	0	1	41256	+		19680	12804	11283	11629	15654	15654					0.01434214571645498
PGGPAAAL	8	Unmodified	_PGGPAAAL_					0	0	0			REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	REV__ENST00000566049.5_1_16:19078961-19089477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016478998	1	653.361702	652.354425	0.62418	0.00040782	-1.4303	-0.00093448	-0.80609	-0.00052667	653.3607186879333	40.464	0.09621	40.464	40.416	40.512	0	762	55	1.1646824	0.032566905	1.1646824	238.17392	0	6.6598206						106	5	2	NaN	NaN	NaN	0.84945	1	2128	2128		0	0	1	18612	+		19681	12804	11283	11629	15655	15655					0.01434214571645498
PGGPAGSP	8	Unmodified	_PGGPAGSP_					0	0	0			REV__ENSG00000107187|ENST00000371748|LHX3	REV__ENSG00000107187|ENST00000371748|LHX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.3096660773999	1	639.309666	638.30239	2.1468	0.0013725	-11.912	-0.0076154	-9.7651	-0.0062429	639.302112515778	25.226	0.19296	25.214	25.214	25.407	-0.012011	1110	58	0.95342636	0.034828126	0.9519069	195.06084	0	7.1254425						165	9	2	NaN	NaN	NaN	0.84887	1	1603	1603		0.32989	0	1	14782	+		19682	9006	11284	11630	15656	15656					-0.03122948842110418
PGGPAGSP	8	Unmodified						0	0	0			REV__ENSG00000107187|ENST00000371748|LHX3	REV__ENSG00000107187|ENST00000371748|LHX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	639.309666	638.30239	1.9149	0.0012242	-14.849	-0.0094929	-12.934	-0.0082687	639.3000704851172	25.202	0.16889	25.202	25.202	25.371	0	1113	73	0.9515937	0.044009984	0.9515937	194.6859		9.003967	-0.0059566	-0.0010325	-0.00015661	NaN	0.32989	147	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12150	+		19683	9006	11284	11630							-0.03122948842110418
PGGPAGSP	8	Unmodified						0	0	0			REV__ENSG00000107187|ENST00000371748|LHX3	REV__ENSG00000107187|ENST00000371748|LHX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	639.309666	638.30239	2.1468	0.0013725	-11.912	-0.0076154	-9.7651	-0.0062429	639.302112515778	25.226	0.19296	25.214	25.214	25.407	-0.012011	1110	58	0.95342636	0.034828126	0.9519069	195.06084		7.1254425	0.0059566	0.00084503	0.00015661	NaN	0.32989	165	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14782	+		19684	9006	11284	11630							-0.03122948842110418
PGGPGPKA	8	Unmodified	_PGGPGPKA_					0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3726006851999	1	680.372601	679.365324	1.8635	0.0012679	-4.6122	-0.003138	-2.7487	-0.0018701	680.3676110992764	57.021	0.048065	57.021	56.996	57.045	0	615	46	1.2531329	0.027004361	1.2531329	256.05258	0	5.5178223						55	3	3	NaN	NaN	NaN	0.84945	1	2833	2833		0	0	1	2956.2	+		19685	10896	11285	11631	15657	15657					0.01281616945937003
PGGPGPKA	8	Unmodified	_PGGPGPKA_					0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3726006851999	1	680.372601	679.365324	1.1605	0.00078954	-3.2006	-0.0021776	-2.0401	-0.0013881	680.3703115776464	35.747	0.14472	35.747	35.675	35.82	0	723	82	1.1881942	0.048811197	1.1881942	242.78362	0	9.973572						257	7	3	NaN	NaN	NaN	0.84945	1	2834	2834		0	0	1	46485	+		19686	10896	11285	11631	15658	15658					0.01281616945937003
PGGPGPKA	8	Unmodified	_PGGPGPKA_					0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3726006851999	1	680.372601	679.365324	1.5056	0.0010243	-2.3663	-0.00161	-0.86076	-0.00058564	680.3712397130868	28.894	0.096533	28.894	28.87	28.967	0	744	37	1.1755381	0.021704316	1.1755381	240.1976	0	4.434845						60	5	2	NaN	NaN	NaN	0.84945	1	2835	2835		0	0	1	4469.7	+		19687	10896	11285	11631	15659	15659					0.01281616945937003
PGGPGPKA	8	Unmodified	_PGGPGPKA_					0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3726006851999	1	680.372601	679.365324	0.83247	0.00056639	-2.2453	-0.0015276	-1.4128	-0.00096126	680.3706056962227	35.722	0.19282	35.722	35.674	35.867	0.00052643	720	73	1.1900014	0.043390036	1.1884819	243.1529	0	8.865875						255	9	3	NaN	NaN	NaN	0.84945	1	2748	2748		0	0	1	46284	+		19688	10896	11285	11631	15660	15660					0.01281616945937003
PGGPGPKA	8	Unmodified						0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	680.372601	679.365324	1.5056	0.0010243	-2.3663	-0.00161	-0.86076	-0.00058564	680.3712397130868	28.894	0.096533	28.894	28.87	28.967	0	744	37	1.1755381	0.021704316	1.1755381	240.1976		4.434845	0.0045615	0.00061435	0.00075972	NaN	0	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4469.7	+		19689	10896	11285	11631							0.01281616945937003
PGGPGPKA	8	Unmodified						0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	680.372601	679.365324	1.1605	0.00078954	-3.2006	-0.0021776	-2.0401	-0.0013881	680.3703115776464	35.747	0.14472	35.747	35.675	35.82	0	723	82	1.1881942	0.048811197	1.1881942	242.78362		9.973572	0.012525	-0.00029178	-0.0001439	NaN	0	257	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46485	+		19690	10896	11285	11631							0.01281616945937003
PGGPGPKA	8	Unmodified						0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	680.372601	679.365324	1.7047	0.0011598	-4.1088	-0.0027955	-2.4041	-0.0016357	680.3693272362857	28.894	0.072439	28.885	28.861	28.933	-0.0083485	744	37	1.1755381	0.021704316	1.1740186	240.1976		4.4348297	-0.0045615	-0.00057118	-0.00075972	NaN	0	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3629	+		19691	10896	11285	11631							0.01281616945937003
PGGPGPKA	8	Unmodified						0	0	0			REV__ENSG00000183615|ENST00000373582|FAM167B	REV__ENSG00000183615|ENST00000373582|FAM167B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	680.372601	679.365324	0.83247	0.00056639	-2.2453	-0.0015276	-1.4128	-0.00096126	680.3706056962227	35.722	0.19282	35.722	35.674	35.867	0.00052643	720	73	1.1900014	0.043390036	1.1884819	243.1529		8.865875	-0.012525	0.00035817	0.0001439	NaN	0	255	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46284	+		19692	10896	11285	11631							0.01281616945937003
PGGPGPPA	8	Unmodified	_PGGPGPPA_					0	0	0		NCKAP5L|p.A172T|1|0.19|ENSG00000167566|chr12:49797346-49797346|C/T|missense_variant;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L	NCKAP5L|p.A172T|1|0.19|ENSG00000167566|chr12:49797346-49797346|C/T|missense_variant	NCKAP5L|p.A172T|1|0.19|ENSG00000167566|chr12:49797346-49797346|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3304015194999	1	649.330402	648.323125	1.7857	0.0011595	-8.8042	-0.0057169	-7.0185	-0.0045573	649.3237578749042	55.1	0.048161	55.1	55.076	55.124	0	663	58	1.2243022	0.034275055	1.2243022	250.39795	0	7.0100403						63	3	2	NaN	NaN	NaN	0.84876	1	2011	2011		0.39566	0	1	4318.2			19693	4553	11286	11632	15661	15661					-0.015103584624398536
PGGPKGMQ	8	Unmodified	_PGGPKGMQ_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.381785163	1	771.381785	770.374509	1.6358	0.0012618	4.2682	0.0032924	5.904	0.0045542	771.3853070768614	28.363	0.096508	28.354	28.305	28.402	-0.0089779	558	46	1.2873057	0.026949644	1.2857863	262.42072	0	5.493744						75	5	2	NaN	NaN	NaN	0.82797	1	4287	4287		5.4659	1.8926	1	5819.4			19694	5894	11287	11633	15662	15662					-0.019863577600403914
PGGPPGRA	8	Unmodified	_PGGPPGRA_					0	0	0		ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486955999	1	708.378749	707.371472	0.93817	0.00066458	-7.1809	-0.0050868	-6.2427	-0.0044222	708.3736494786718	32.876	0.21722	32.876	32.804	33.021	0	714	70	1.1936152	0.04156208	1.1936152	243.7006	0	8.485733						442	10	4	NaN	NaN	NaN	0.84876	1	3373	3373		0.39566	0	1	91935			19695	6515	11288	11634	15663	15663					0.006081351774582799
PGGPPGRA	8	Unmodified	_PGGPPGRA_					0	0	0		ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	ENST00000333676.7_1_17:79674390-79674522:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.83315	0.00059019	-7.6936	-0.00545	-6.8605	-0.0048598	708.3733340752423	40.27	0.19233	40.276	40.252	40.444	0.0060463	693	46	1.2062578	0.027079582	1.2047384	246.28185	0	5.528839						134	9	2	NaN	NaN	NaN	0.84876	1	3301	3301		0.39566	0	1	11689			19696	6515	11288	11634	15664	15664					0.006081351774582799
PGGPPSSS	8	Unmodified	_PGGPPSSS_					0	0	0			REV__nc|ENSG00000089159|P49023-4|PXN	REV__nc|ENSG00000089159|P49023-4|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.1612109262	2	343.161211	684.307869	1.4069	0.00048278	2.1742	0.0007461	3.5811	0.0012289	343.16244415674834	32.732	0.21714	32.732	32.683	32.9	0	1470	55	0.7320868	0.03341353	0.7320868	299.12317	0	13.652435						264	10	4	NaN	NaN	NaN	0.84887	1	2922	2922		0.32989	0.32989	1	36846	+		19697	8713	11289	11635	15665	15665					-0.04691270050284402
PGGPPVIA	8	Unmodified	_PGGPPVIA_					0	0	0		ENST00000541712.5_1_12:123343395-123344723:+|nuORF	ENST00000541712.5_1_12:123343395-123344723:+|nuORF	ENST00000541712.5_1_12:123343395-123344723:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	354.20796415354994	2	354.207964	706.401375	1.2849	0.00045512	-3.9653	-0.0014045	-2.6804	-0.00094942	354.206779590793	32.345	0.19309	32.345	32.249	32.442	0	1467	34	0.7339432	0.020420492	0.7339432	299.69827	0	8.338501						120	9	2	NaN	NaN	NaN	0.84876	1	3344	3344		0.39566	0	1	12569			19698	7500	11290	11636	15666	15666					0.03643074122794587
PGGPVLAN	8	Unmodified	_PGGPVLAN_					0	0	0			REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3988154356999	1	724.398815	723.391539	1.177	0.00085262	-4.4485	-0.0032225	-3.2714	-0.0023698	724.3954029699054	36.446	0.14476	36.446	36.398	36.543	0	654	73	1.2297117	0.043283343	1.2297117	250.96477	0	8.833435						164	7	2	NaN	NaN	NaN	0.84876	1	3664	3664		0.39566	0	1	23024	+		19699	12644	11291	11637	15667	15667					0.01877886117415528
PGGPVLAN	8	Unmodified						0	0	0			REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	REV__ENST00000530134.5_1_1:32205534-32221699:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	724.398815	723.391539	1.177	0.00085262	-4.4485	-0.0032225	-3.2714	-0.0023698	724.3954029699054	36.446	0.14476	36.446	36.398	36.543	0	654	73	1.2297117	0.043283343	1.2297117	250.96477		8.833435	9.3897E-05	-0.00029274	-0.00014168	NaN	0.39566	164	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23024	+		19700	12644	11291	11637							0.01877886117415528
PGGQSFPF	8	Unmodified	_PGGQSFPF_					0	0	0		nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO	nc|ENSG00000138092|Q9BU64-2|CENPO	nc|ENSG00000138092|Q9BU64-2|CENPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.3937300578001	1	836.39373	835.386454	1.2241	0.0010238	4.4355	0.0037098	5.6596	0.0047336	836.3973231369259	33.456	0.21707	33.456	33.383	33.6	0	417	133	1.3715409	0.078761935	1.3715409	279.21124	0	16.033936						501	10	4	NaN	NaN	NaN	0.528	1	5203	5203		29.598	0.9318	1	117020			19701	3138	11292	11638	15668	15668					-0.03782417745185285
PGGTGHVI	8	Unmodified	_PGGTGHVI_					0	0	0		ENST00000431076.5_1_2:155098684-155265690:+|nuORF;nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	ENST00000431076.5_1_2:155098684-155265690:+|nuORF	ENST00000431076.5_1_2:155098684-155265690:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3940644088001	1	737.394064	736.386788	1.4106	0.0010401	-4.8426	-0.0035709	-3.432	-0.0025308	737.390793176995	30.415	0.16893	30.415	30.366	30.535	0	555	94	1.2891023	0.055725694	1.2891023	262.99915	0	11.368988						296	8	2	NaN	NaN	NaN	0.8439	1	3855	3855		3.1533	0	1	48331			19702	3469	11293	11639	15669	15669					0.008050019746633552
PGGTRGGH	8	Unmodified	_PGGTRGGH_					0	0	0		ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3641612639002	1	738.364161	737.356885	1.3049	0.00096352	4.0473	0.0029883	5.3522	0.0039519	738.3672085132574	20.429	0.2405	20.429	20.381	20.622	0	609	88	1.2567334	0.052197337	1.2567334	256.38913	0	10.64888						337	11	3	NaN	NaN	NaN	0.82797	1	3874	3874		5.4659	0	1	35574			19703	6442	11294	11640	15670	15670					-0.022299369706615835
PGGTRGGH	8	Unmodified						0	0	0		ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	738.364161	737.356885	1.4477	0.0010689	4.1804	0.0030867	5.6281	0.0041556	738.3668636230897	20.429	0.24076	20.415	20.367	20.608	-0.014141	606	91	1.2585332	0.05400586	1.2570138	256.75632		11.017868	-0.0070117	4.9962E-05	0.00014023	NaN	5.4659	304	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32454			19704	6442	11294	11640							-0.022299369706615835
PGGVGGPP	8	Unmodified	_PGGVGGPP_					0	0	0			REV__ENST00000444521.6_1_1:2520880-2521423:+|nuORF	REV__ENST00000444521.6_1_1:2520880-2521423:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3304015195	1	637.330402	636.323125	1.8418	0.0011738	5.8791	0.0037469	7.7209	0.0049208	637.333910494682	24.26	0.024132	24.248	24.248	24.272	-0.012749	711	97	1.1954219	0.057791352	1.1939025	244.58638	0	11.82428						66	2	2	NaN	NaN	NaN	0.84651	1	1554	1554		1.6704	0	1	7695.8	+		19705	12204	11295	11641	15671	15671					-0.009583584624351715
PGGVGGPP	8	Unmodified						0	0	0			REV__ENST00000444521.6_1_1:2520880-2521423:+|nuORF	REV__ENST00000444521.6_1_1:2520880-2521423:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	637.330402	636.323125	1.8418	0.0011738	5.8791	0.0037469	7.7209	0.0049208	637.333910494682	24.26	0.024132	24.248	24.248	24.272	-0.012749	711	97	1.1954219	0.057791352	1.1939025	244.58638		11.82428	-0.0065195	0.001188	0.00014361	NaN	1.6704	66	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7695.8	+		19706	12204	11295	11641							-0.009583584624351715
PGGVGVGG	8	Unmodified	_PGGVGVGG_					0	0	0		ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.5526	0.00046602	5.9212	0.0017773	7.4738	0.0022433	300.1630039480627	40.535	0.072124	40.541	40.469	40.541	0.0067596	1515	40	0.7042165	0.024172664	0.70269704	288.54272	0	9.904388						72	4	2	NaN	NaN	NaN	0.84876	1	579	579		0.39566	0	1	7005.1			19707	7719	11296	11642	15672	15672					-0.007746449794694854
PGGVGVGG	8	Unmodified						0	0	0		ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENST00000589009.5_1_19:10227257-10229639:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	300.161014	598.307475	0.96516	0.0002897	5.5459	0.0016647	6.5111	0.0019544	300.16265815450777	40.176	0.1443	40.176	40.104	40.248	0	1515	40	0.7042165	0.024175227	0.7042165	288.54272		9.905487	-0.18275	-6.3943E-05	0.00075972	NaN	0.39566	124	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21700			19708	7719	11296	11642							-0.007746449794694854
PGGYSYSI	8	Unmodified	_PGGYSYSI_					0	0	0		ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.3883103289	1	843.38831	842.381034	0.72923	0.00061502	0.80192	0.00067633	1.5311	0.0012914	843.389039609429	20.887	0.16849	20.873	20.801	20.969	-0.014088	456	40	1.348284	0.0232718	1.3467646	274.43985	0	4.736908						141	8	2	NaN	NaN	NaN	0.40747	1	5166	5166		36.036	7.3698	1	9939.4			19709	7490	11297	11643	15673	15673					-0.04646141327668829
PGHAAAGS	8	Unmodified	_PGHAAAGS_					0	0	0			REV__nc|ENSG00000204248|P13942-5|COL11A2	REV__nc|ENSG00000204248|P13942-5|COL11A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3158140878	1	667.315814	666.308538	1.0174	0.00067892	3.3961	0.0022663	4.4135	0.0029452	667.3180182113506	42.217	0.09597	42.226	42.178	42.274	0.0089951	750	55	1.1719203	0.03255999	1.1704009	239.55098	0	6.655548						102	5	2	NaN	NaN	NaN	0.84651	1	2395	2395		1.6704	0	1	8586.2	+		19710	11230	11298	11644	15674	15674					-0.03796430610577772
PGHAASGL	8	Unmodified	_PGHAASGL_					0	0	0			REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804	1	709.362764	708.355488	1.278	0.00090657	-6.7481	-0.0047869	-5.4701	-0.0038803	709.3580809871481	23.899	0.2411	23.899	23.827	24.068	0	711	55	1.1954219	0.03251815	1.1954219	244.06303	0	6.6390533						344	11	4	NaN	NaN	NaN	0.82797	1	3388	3388		5.4659	0	1	51491	+		19711	11442	11299	11645	15675	15675					-0.010355710594353695
PGHAASGL	8	Unmodified						0	0	0			REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.362764	708.355488	1.278	0.00090657	-6.7481	-0.0047869	-5.4701	-0.0038803	709.3580809871481	23.899	0.2411	23.899	23.827	24.068	0	711	55	1.1954219	0.03251815	1.1954219	244.06303		6.6390533	0.0066209	0.00047997	-0.00014351	NaN	5.4659	344	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51491	+		19712	11442	11299	11645							-0.010355710594353695
PGHAASGL	8	Unmodified						0	0	0			REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	REV__ENST00000002596.5_1_4:11430368-11430548:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.362764	708.355488	1.2694	0.00090044	-7.9097	-0.0056109	-6.6404	-0.0047104	709.3570539491213	23.899	0.19294	23.886	23.837	24.03	-0.01305	708	58	1.1972283	0.034322858	1.1957089	244.43185		7.0075073	-0.0066209	-0.00034402	0.00014351	NaN	5.4659	251	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27870	+		19713	11442	11299	11645							-0.010355710594353695
PGHGGDHG	8	Unmodified	_PGHGGDHG_					0	0	0			REV__ENST00000491397.1_1_1:104112123-104112345:+|nuORF	REV__ENST00000491397.1_1_1:104112123-104112345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3012266561001	1	733.301227	732.29395	1.1402	0.00083609	8.8053	0.006457	9.9455	0.007293	733.307665535147	44.256	0.2636	44.256	44.184	44.448	0	732	40	1.1827712	0.023504138	1.1827712	241.33035	0	4.795746						148	12	2	NaN	NaN	NaN	0.84887	1	3787	3787		0.32989	0	1	11196	+		19714	12465	11300	11646	15676	15676					-0.08290502758711682
PGHGRGGG	8	Unmodified	_PGHGRGGG_					0	0	0		ENST00000400337.6_1_21:46825125-46888416:+|nuORF	ENST00000400337.6_1_21:46825125-46888416:+|nuORF	ENST00000400337.6_1_21:46825125-46888416:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3379465134002	1	694.337947	693.33067	1.2842	0.00089167	1.5514	0.0010772	2.8356	0.0019689	694.3390911264754	36.324	0.16858	36.325	36.277	36.446	0.0011024	648	67	1.2333171	0.03965509	1.2317977	251.90334	0	8.099503						219	8	3	NaN	NaN	NaN	0.84876	1	3040	3040		0.39566	0	1	21253			19715	6829	11301	11647	15677	15677					-0.028262061421401086
PGKAGGQV	8	Unmodified	_PGKAGGQV_					0	0	0		nc|ENSG00000006118|Q24JP5-3|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.3940644088001	1	713.394064	712.386788	1.1994	0.00085562	-8.3124	-0.00593	-7.1131	-0.0050744	713.387732208041	27.663	0.072374	27.653	27.629	27.702	-0.009552	579	73	1.2747238	0.04317701	1.2732043	260.22574	0	8.814285						73	4	2	NaN	NaN	NaN	0.84455	1	3403	3403		2.7852	1.5433	1	5630.9			19716	7893	11302	11648	15678	15678					0.019090019746613507
PGKAGGQV	8	Unmodified						0	0	0		nc|ENSG00000006118|Q24JP5-3|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	nc|ENSG00000006118|Q24JP5-3|TMEM132A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	713.394064	712.386788	1.2146	0.00086652	-9.3366	-0.0066607	-8.122	-0.0057942	713.3880709467252	27.664	0.048246	27.664	27.639	27.688	0	579	49	1.2747238	0.028772473	1.2747238	260.22577		5.873657	0.0051767	-0.00031978	0.00075972	NaN	2.7852	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5250.7			19717	7893	11302	11648							0.019090019746613507
PGKNRTLQ	8	Unmodified	_PGKNRTLQ_					0	0	0		ENST00000409719.1_1_2:113346626-113346773:+|nuORF	ENST00000409719.1_1_2:113346626-113346773:+|nuORF	ENST00000409719.1_1_2:113346626-113346773:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.264333327	2	457.264333	912.514114	0.83474	0.0003817	-3.2384	-0.0014808	-2.4036	-0.0010991	457.26273453463887	28.58	0.072355	28.572	28.572	28.644	-0.0083485	1317	85	0.8265074	0.051678896	0.82498795	336.04608	0	21.011902						149	4	2	NaN	NaN	NaN	0.84562	1	6158	6158		2.1763	0.93449	1	24439			19718	6865	11303	11649	15679	15679					0.054357228488470355
PGKNRTLQ	8	Unmodified						0	0	0		ENST00000409719.1_1_2:113346626-113346773:+|nuORF	ENST00000409719.1_1_2:113346626-113346773:+|nuORF	ENST00000409719.1_1_2:113346626-113346773:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.264333	912.514114	1.0725	0.00049042	-2.6655	-0.0012188	-1.5929	-0.00072839	457.2629743707233	28.556	0.14477	28.556	28.532	28.677	0	1314	121	0.8283535	0.07379508	0.8283535	336.7967		30.004028	-0.0075285	0.00021898	0.0016828	NaN	2.1763	295	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33726			19719	6865	11303	11649							0.054357228488470355
PGKPGPGR	8	Unmodified	_PGKPGPGR_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.22193719605	2	383.221937	764.429321	0.91686	0.00035136	-2.8388	-0.0010879	-1.9219	-0.00073653	383.22086379432756	12.58	0.14404	12.58	12.556	12.7	0	1461	37	0.7376554	0.022270858	0.7376554	300.78006	0	9.080963						108	7	2	NaN	NaN	NaN	0.80692	1	4279	4279		8.2903	0	1	11810	+		19720	9715	11304	11650	15680	15680					0.0376839710289687
PGLAGHAA	8	Unmodified	_PGLAGHAA_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3678496582999	1	693.36785	692.360573	1.563	0.0010837	-7.1909	-0.004986	-5.628	-0.0039023	693.3622694072819	30.294	0.096516	30.294	30.27	30.366	0	714	58	1.1936152	0.034333944	1.1936152	243.80093	0	7.0128326						91	5	2	NaN	NaN	NaN	0.84945	1	3088	3088		0	0	1	6386.2			19721	1538	11305	11651	15681	15681					0.0020873280316209275
PGLDNPNL	8	Unmodified	_PGLDNPNL_					0	0	0			REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.4257584676999	1	839.425758	838.418482	1.4581	0.0012239	4.3618	0.0036614	5.8199	0.0048854	839.429859880696	27.253	0.19306	27.253	27.205	27.398	0	459	55	1.3464937	0.032231092	1.3464937	274.09622	0	6.561035						176	9	2	NaN	NaN	NaN	0.67593	1	5247	5247		20.555	1.4371	1	18245	+		19722	8491	11306	11652	15682	15682					-0.00719050062059523
PGLFQGPA	8	Unmodified	_PGLFQGPA_					0	0	0		nc|ENSG00000224940|C9JH25-3|PRRT4;ENSG00000224940|ENST00000446477|PRRT4	nc|ENSG00000224940|C9JH25-3|PRRT4	nc|ENSG00000224940|C9JH25-3|PRRT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4144654999001	1	786.414465	785.407189	0.18057	0.00014201	-8.3576	-0.0065725	-8.177	-0.0064305	786.4072302533218	48.76	0.11971	48.764	48.716	48.836	0.003643	561	34	1.2855089	0.019765139	1.2839894	261.96667	0	4.027832						82	6	2	NaN	NaN	NaN	0.84207	1	4485	4485		3.5732	1.1117	1	5139.5			19723	6022	11307	11653	15683	15683					0.005901726344745839
PGLGMGGK	8	Unmodified	_PGLGMGGK_					0	0	0		ENST00000477288.5_1_6:30882161-30882323:+|nuORF	ENST00000477288.5_1_6:30882161-30882323:+|nuORF	ENST00000477288.5_1_6:30882161-30882323:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.3759715036001	1	716.375972	715.368695	1.5251	0.0010925	5.6512	0.0040484	7.1763	0.0051409	716.3799867578487	25.25	0.072401	25.25	25.226	25.298	0	633	43	1.2423272	0.025221586	1.2423272	253.59221	0	5.1483917						61	4	2	NaN	NaN	NaN	0.84692	1	3523	3523		1.4396	0	1	4738.5			19724	7182	11308	11654	15684	15684					-0.00037456271695646137
PGLLFLLLT	9	Unmodified	_PGLLFLLLT_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000477959.1_1_3:183962361-183963122:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.6284810208	1	986.628481	985.621205	2.0243	0.0019972	-2.0397	-0.0020125	-0.01545	-1.5244E-05	986.6243862566346	40.607	0.072044	40.613	40.565	40.637	0.0067596	207	49	1.496219	0.028392076	1.4946996	303.84012	0	5.765625						52	4	2	NaN	NaN	NaN	0.58547	1	7912	7912		6.0903	0	1	3237.6			19725	5	11309	11655	15685	15685					0.12781880010504665
PGLRDWLL	8	Unmodified	_PGLRDWLL_					0	0	0		ENST00000373861.5_2_6:35754788-35755660:+|nuORF	ENST00000373861.5_2_6:35754788-35755660:+|nuORF	ENST00000373861.5_2_6:35754788-35755660:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.27945207495003	2	485.279452	968.544351	1.602	0.00077743	-4.4131	-0.0021416	-2.8111	-0.0013642	485.27686925943226	24.068	0.096516	24.068	24.044	24.14	0	1341	34	0.8117308	0.020325482	0.8117308	329.75488	0	8.256958						78	5	2	NaN	NaN	NaN	0.6053	1	7575	7575		24.961	1.6266	1	8513			19726	6682	11310	11656	15686	15686					0.05882081514039328
PGMPGSVGP	9	Unmodified	_PGMPGSVGP_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1	REV__nc|ENSG00000139219|P02458-1|COL2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.69436363930004	2	399.694364	797.374174	1.5179	0.00060668	6.518	0.0026052	8.0358	0.0032119	399.69731709173556	13.445	0.12007	13.445	13.397	13.517	0	1488	37	0.7209441	0.022295058	0.7209441	293.75226	0	9.084198						88	6	3	NaN	NaN	NaN	0.56671	1	4720	4720		6.8632	0.77288	1	6830.4	+		19727	9760	11311	11657	15687	15687					-0.032617774798723076
PGMPGSVGP	9	Unmodified						0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1	REV__nc|ENSG00000139219|P02458-1|COL2A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.694364	797.374174	1.5179	0.00060668	6.518	0.0026052	8.0358	0.0032119	399.69731709173556	13.445	0.12007	13.445	13.397	13.517	0	1488	37	0.7209441	0.022295058	0.7209441	293.75226		9.084198	0.016674	-0.0011007	0.0026176	NaN	6.8632	88	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6830.4	+		19728	9760	11311	11657							-0.032617774798723076
PGNWLSAL	8	Unmodified	_PGNWLSAL_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4515792876999	1	857.451579	856.444303	1.9872	0.001704	-2.5117	-0.0021536	-0.52443	-0.00044967	857.4500441232613	30.198	0.12067	30.198	30.149	30.27	0	441	49	1.3572328	0.02862537	1.3572328	276.18854	0	5.8251038						99	6	2	NaN	NaN	NaN	0.63138	1	5485	5485		23.334	1.2081	1	7688.4			19729	1226	11312	11658	15688	15688					0.010338441802218767
PGNWLSAL	8	Unmodified	_PGNWLSAL_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4515792876999	1	857.451579	856.444303	1.031	0.00088401	-1.7955	-0.0015395	-0.76452	-0.00065553	857.4502463439612	30.197	0.12067	30.19	30.142	30.263	-0.0064106	441	46	1.3572328	0.026837707	1.3557134	276.18854	0	5.461334						111	6	2	NaN	NaN	NaN	0.69898	1	5349	5349		19.118	3.6556	1	8633.4			19730	1226	11312	11658	15689	15689					0.010338441802218767
PGPAGRGD	8	Unmodified	_PGPAGRGD_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3529278756	1	726.352928	725.345651	1.3673	0.00099318	-8.9399	-0.0064936	-7.5726	-0.0055004	726.3462806366077	24.96	0.12066	24.96	24.936	25.057	0	618	82	1.2513325	0.048633933	1.2513325	255.36447	0	9.924896						188	6	3	NaN	NaN	NaN	0.80071	1	3690	3690		9.1232	0	1	18064			19731	6143	11313	11659	15690	15690					-0.028007590648144287
PGPAKAGP	8	Unmodified	_PGPAKAGP_					0	0	0			REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	REV__ENST00000445755.6_1_19:18054520-18054739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3882507494001	1	694.388251	693.380974	1.6154	0.0011217	-10.069	-0.0069919	-8.4537	-0.0058702	694.3813776972706	36.276	0.02409	36.277	36.253	36.277	0.0011024	738	46	1.179155	0.027123094	1.1776356	240.84052	0	5.5398407						51	2	2	NaN	NaN	NaN	0.84727	1	3049	3049		1.2418	0	1	5330	+		19732	12207	11314	11660	15691	15691					0.022019034629920498
PGPAPHSC	8	Unmodified	_PGPAPHSC_					0	0	0			REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3348349704	1	765.334835	764.327559	1.5362	0.0011757	-10.462	-0.0080072	-8.9261	-0.0068315	765.327112627136	37.504	0.12048	37.506	37.458	37.579	0.0028229	687	40	1.2098682	0.023466468	1.2083488	246.66908	0	4.784363						91	6	2	NaN	NaN	NaN	0.84887	1	4196	4196		0.32989	0	1	6951	+		19733	12015	11315	11661	15692	15692					-0.06403217311174103
PGPAYGDAQSL	11	Unmodified	_PGPAYGDAQSL_					0	0	0		nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.1733394283	3	359.173339	1074.49819	1.4473	0.00051983	5.5228	0.0019837	6.9701	0.0025035	359.175666451285	31.138	0.096495	31.133	31.109	31.205	-0.0050716	1530	52	0.6949163	0.03162414	0.69339687	422.86075	0	19.24347						125	5	3	NaN	NaN	NaN	0.74794	1	11440	11440		1.6806	0	1	11676			19734	7894	11316	11662	15693	15693					-0.03608028178700806
PGPDGGVL	8	Unmodified	_PGPDGGVL_					0	0	0		nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-5|RGS3;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3	nc|ENSG00000138835|P49796-9|RGS3	nc|ENSG00000138835|P49796-9|RGS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3671809563001	1	711.367181	710.359904	1.3672	0.00097261	1.0651	0.00075771	2.4324	0.0017303	711.367952726979	30.414	0.072405	30.407	30.383	30.456	-0.0064106	657	40	1.2279087	0.023436308	1.2263893	250.68224	0	4.784622						61	4	2	NaN	NaN	NaN	0.84692	1	3367	3367		1.4396	0	1	3710.8			19735	3196	11317	11663	15694	15694					-0.006861066365217994
PGPGAGNH	8	Unmodified	_PGPGAGNH_					0	0	0		ENST00000377680.3_1_9:38621281-38621927:+|nuORF;ENST00000484285.2_1_9:38620779-38621927:+|nuORF	ENST00000377680.3_1_9:38621281-38621927:+|nuORF	ENST00000377680.3_1_9:38621281-38621927:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3267131251001	1	706.326713	705.319437	1.3092	0.00092475	2.2059	0.0015581	3.5151	0.0024828	706.3274003652547	57.309	0.072025	57.309	57.285	57.357	0	639	40	1.2387238	0.023426294	1.2387238	252.92435	0	4.7832184						62	4	2	NaN	NaN	NaN	0.84727	1	3309	3309		1.2418	0	1	5347.1			19736	6709	11318	11664	15695	15695					-0.045010282362795806
PGPGAGTE	8	Unmodified	_PGPGAGTE_					0	0	0		ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.1612109262	2	343.161211	684.307869	1.1143	0.00038238	3.851	0.0013215	4.9653	0.0017039	343.1624035013338	34.951	0.12047	34.951	34.879	34.999	0	1524	73	0.698637	0.044653118	0.698637	285.4559	0	18.244781						106	6	2	NaN	NaN	NaN	0.8439	1	2923	2923		3.1533	0	1	8640.5			19737	7597	11319	11665	15696	15696					-0.04691270050284402
PGPGALAA	8	Unmodified	_PGPGALAA_					0	0	0			REV__nc|ENSG00000152256|Q15118-2|PDK1	REV__nc|ENSG00000152256|Q15118-2|PDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016479001	1	653.361702	652.354425	0.62898	0.00041095	0.67285	0.00043962	1.3018	0.00085057	653.361812703467	39.694	0.217	39.694	39.694	39.911	0	780	64	1.1538198	0.038029313	1.1538198	235.95253	0	7.776886						309	10	2	NaN	NaN	NaN	0.84876	1	2129	2129		0.39566	0	1	45991	+		19738	10048	11320	11666	15697	15697					0.014342145716682353
PGPGALAA	8	Unmodified						0	0	0			REV__nc|ENSG00000152256|Q15118-2|PDK1	REV__nc|ENSG00000152256|Q15118-2|PDK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.62898	0.00041095	0.67285	0.00043962	1.3018	0.00085057	653.361812703467	39.694	0.217	39.694	39.694	39.911	0	780	64	1.1538198	0.038029313	1.1538198	235.95253		7.776886	0.010428	0.00012614	-0.00014574	NaN	0.39566	309	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45991	+		19739	10048	11320	11666							0.014342145716682353
PGPGAMLL	8	Unmodified	_PGPGAMLL_					0	0	0		ENST00000445755.6_1_19:18054520-18054739:+|nuORF	ENST00000445755.6_1_19:18054520-18054739:+|nuORF	ENST00000445755.6_1_19:18054520-18054739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.4120226589001	1	755.412023	754.404746	2.2695	0.0017144	-1.8247	-0.0013784	0.44476	0.00033598	755.4103275637284	23.416	0.072395	23.403	23.355	23.427	-0.013294	525	46	1.3070582	0.026918054	1.3055388	266.54602	0	5.4893494						81	4	2	NaN	NaN	NaN	0.81214	1	4070	4070		7.5902	0	1	6810.7			19740	7020	11321	11667	15698	15698					0.017720009051686247
PGPGDAGV	8	Unmodified	_PGPGDAGV_					0	0	0		chr1:203168452-203168627|191|50.46|0.7|6.17|-|2|None,MYBPH|1	chr1:203168452-203168627|191|50.46|0.7|6.17|-|2|None,MYBPH|1	chr1:203168452-203168627|191|50.46|0.7|6.17|-|2|None,MYBPH|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515003	2	335.163754	668.312954	1.5599	0.00052282	3.3985	0.001139	4.9584	0.0016619	335.165043333456	45.884	0.047935	45.895	45.871	45.919	0.010719	1536	34	0.69119483	0.020471573	0.6896754	282.5472	0	8.368378						30	3	2	NaN	NaN	NaN	0.84692	1	2449	2449		1.4396	0	1	1976.7			19741	111	11322	11668	15699	15699					-0.034469661876528335
PGPGDGPS	8	Unmodified	_PGPGDGPS_					0	0	0		ENST00000418888.5_2_2:170441100-170441295:+|nuORF	ENST00000418888.5_2_2:170441100-170441295:+|nuORF	ENST00000418888.5_2_2:170441100-170441295:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15338589410004	2	342.153386	682.292219	1.0982	0.00037577	5.0911	0.0017419	6.1894	0.0021177	342.15570150263454	30.946	0.048252	30.946	30.922	30.97	0	1557	100	0.67816323	0.061401308	0.67816323	277.10654	0	25.089386						87	3	2	NaN	NaN	NaN	0.84727	1	2881	2881		1.2418	0	1	6998.9			19742	6900	11323	11669	15700	15700					-0.06163556567321393
PGPGDGPS	8	Unmodified						0	0	0		ENST00000418888.5_2_2:170441100-170441295:+|nuORF	ENST00000418888.5_2_2:170441100-170441295:+|nuORF	ENST00000418888.5_2_2:170441100-170441295:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.153386	682.292219	1.4731	0.00050404	4.2996	0.0014711	5.7727	0.0019752	342.1554876080773	31.017	0.16896	31.012	30.964	31.133	-0.0050716	1512	103	0.7060759	0.06324482	0.70455647	288.51205		25.842682	0.033163	-0.00017326	0.013197	NaN	1.2418	264	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26943			19743	6900	11323	11669							-0.06163556567321393
PGPGEGES	8	Unmodified	_PGPGEGES_					0	0	0			REV__ENSG00000181409|ENST00000326724|AATK	REV__ENSG00000181409|ENST00000326724|AATK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.1561255483	2	365.156126	728.297698	1.1834	0.00043212	-2.4781	-0.00090489	-1.2947	-0.00047277	365.1554730254006	41.785	0.096321	41.794	41.698	41.794	0.0089989	1473	52	0.7302302	0.031576037	0.7287108	298.012	0	12.886414						101	5	3	NaN	NaN	NaN	0.8439	1	3654	3654		3.1533	0	1	8057.1	+		19744	10843	11324	11670	15701	15701					-0.07731877775518115
PGPGGART	8	Unmodified	_PGPGGART_					0	0	0			REV__ENST00000606069.1_1_3:27754453-27754552:+|nuORF	REV__ENST00000606069.1_1_3:27754453-27754552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3736633177001	1	712.373663	711.366387	0.96977	0.00069084	-0.19172	-0.00013658	0.77804	0.00055426	712.3737427164227	35.868	0.072342	35.868	35.82	35.892	0	654	37	1.2297117	0.021634698	1.2297117	251.04361	0	4.416687						60	4	2	NaN	NaN	NaN	0.84651	1	3453	3453		1.6704	0.42852	1	3676.9	+		19745	12976	11325	11671	15702	15702					-0.0008416868514586895
PGPGGCGP	8	Unmodified	_PGPGGCGP_					0	0	0		ENST00000604729.5_1_10:75545341-75545701:+|nuORF	ENST00000604729.5_1_10:75545341-75545701:+|nuORF	ENST00000604729.5_1_10:75545341-75545701:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2711720811001	1	641.271172	640.263896	1.0892	0.00069846	6.8539	0.0043952	7.9431	0.0050937	641.2753795444536	33.238	0.14479	33.238	33.19	33.335	0	720	91	1.1900014	0.05425489	1.1900014	243.44582	0	11.099258						182	7	3	NaN	NaN	NaN	0.84876	1	1734	1734		0.39566	0	1	15114			19746	7779	11326	11672	15703	15703					-0.07062577748263266
PGPGGCGP	8	Unmodified						0	0	0		ENST00000604729.5_1_10:75545341-75545701:+|nuORF	ENST00000604729.5_1_10:75545341-75545701:+|nuORF	ENST00000604729.5_1_10:75545341-75545701:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	641.271172	640.263896	1.3425	0.00086093	8.5539	0.0054854	9.8964	0.0063463	641.2762211255018	33.237	0.16892	33.235	33.186	33.355	-0.0024757	723	79	1.1881942	0.047000885	1.1866747	243.0761		9.615234	-0.0018954	0.0006611	-0.0016633	NaN	0.39566	143	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15529			19747	7779	11326	11672							-0.07062577748263266
PGPGGGMA	8	Unmodified	_PGPGGGMA_					0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.2868221453	1	643.286822	642.279546	1.5507	0.00099751	2.7046	0.0017398	4.2552	0.0027373	643.2874644738566	35.818	0.16863	35.819	35.77	35.939	0.00052643	735	112	1.1809633	0.06692529	1.1794438	241.58101	0	13.690399						283	8	3	NaN	NaN	NaN	0.81214	1	1680	1680		7.5902	0	1	28061			19748	10973	11327	11673	15704	15704					-0.05590291231226274
PGPGGGMA	8	Unmodified						0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	643.286822	642.279546	1.4703	0.00094581	1.1029	0.00070949	2.5732	0.0016553	643.287756729197	35.82	0.12059	35.82	35.795	35.916	0	744	85	1.1755381	0.05063796	1.1755381	240.47122		10.358643	0.00050888	-0.00028197	-0.0019529	NaN	7.5902	214	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28117			19749	10973	11327	11673							-0.05590291231226274
PGPGPVAP	8	Unmodified	_PGPGPVAP_					0	0	0			REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF	REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3773517121	1	691.377352	690.370075	2.1197	0.0014655	-11.978	-0.0082813	-9.8584	-0.0068158	691.3687248903761	26.07	0.1931	26.07	26.022	26.215	0	657	52	1.2279087	0.030650854	1.2279087	250.81956	0	6.260895						167	9	2	NaN	NaN	NaN	0.84651	1	3045	3045		1.6704	0	1	22490	+		19750	11902	11328	11674	15705	15705					0.012505010887025492
PGPGVGCG	8	Unmodified	_PGPGVGCG_					0	0	0			REV__ENST00000300954.9_1_19:1490211-1490394:-|nuORF	REV__ENST00000300954.9_1_19:1490211-1490394:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2868221453001	1	643.286822	642.279546	1.4703	0.00094581	1.1029	0.00070949	2.5732	0.0016553	643.287756729197	35.82	0.12059	35.82	35.795	35.916	0	744	85	1.1755381	0.05063796	1.1755381	240.47122	0	10.358643						214	6	2	NaN	NaN	NaN	0.84651	1	1774	1774		1.6704	0	1	28117	+		19751	11652	11329	11675	15706	15706					-0.055902912312149056
PGPNIGGD	8	Unmodified	_PGPNIGGD_					0	0	0		ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3416944873001	1	726.341694	725.334418	1.4229	0.0010335	5.7507	0.0041769	7.1736	0.0052105	726.3457104850604	24.96	0.1448	24.948	24.924	25.068	-0.012394	618	67	1.2513325	0.039621234	1.2498131	255.36449	0	8.085663						181	7	3	NaN	NaN	NaN	0.81251	1	3607	3607		7.5404	2.0745	1	16360			19752	3950	11330	11676	15707	15707					-0.03923581158949219
PGPPGGEG	8	Unmodified	_PGPPGGEG_					0	0	0			REV__nc|ENSG00000130635|P20908-2|COL5A1	REV__nc|ENSG00000130635|P20908-2|COL5A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.15592858305	2	334.155929	666.297304	1.6473	0.00055047	4.2968	0.0014358	5.9441	0.0019863	334.1574035303894	37.792	0.16831	37.795	37.723	37.891	0.0028229	1542	82	0.6874725	0.050259292	0.6859531	281.0426	0	20.546295						299	8	2	NaN	NaN	NaN	0.84692	1	2389	2389		1.4396	0	1	52608	+		19753	9490	11331	11677	15708	15708					-0.049192527047011936
PGPPVGGG	8	Unmodified	_PGPPVGGG_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3304015195002	1	637.330402	636.323125	1.4091	0.00089804	1.8832	0.0012002	3.2923	0.0020983	637.3309052000978	24.261	0.048231	24.261	24.237	24.285	0	714	121	1.1936152	0.07234776	1.1936152	244.21675	0	14.802521						85	3	2	NaN	NaN	NaN	0.84945	1	1638	1638		0	0	1	11085			19754	2162	11332	11678	15709	15709					-0.009583584624124342
PGPSGGGGG	9	Unmodified	_PGPSGGGGG_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.2841796084002	1	642.28418	641.276903	1.4331	0.00092046	7.0831	0.0045493	8.5162	0.0054698	642.2893493213068	30.777	0.21716	30.777	30.728	30.946	0	1395	112	0.7784366	0.06856054	0.7784366	159.24426	0	14.025391						406	10	4	NaN	NaN	NaN	0.6907	1	1759	1759		0	0	1	64642	+		19755	8722	11333	11679	15710	15710					-0.05808423364499049
PGPSGGGGG	9	Unmodified	_PGPSGGGGG_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.2841796084002	1	642.28418	641.276903	1.446	0.00092875	7.336	0.0047118	8.782	0.0056405	642.2895213733115	31.863	0.24136	31.863	31.815	32.056	0	1401	94	0.77473325	0.057436407	0.77473325	158.48666	0	11.749725						389	11	3	NaN	NaN	NaN	0.6907	1	1760	1760		0	0	1	57014	+		19756	8722	11333	11679	15711	15711					-0.05808423364499049
PGPSGGGGG	9	Unmodified	_PGPSGGGGG_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.2841796084002	1	642.28418	641.276903	1.7414	0.0011184	7.9403	0.0051	9.6817	0.0062184	642.2903416340234	32.2	0.07238	32.196	32.172	32.244	-0.0037613	726	46	1.1863867	0.027114391	1.1848673	242.69833	0	5.546768						74	4	2	NaN	NaN	NaN	0.6907	1	1665	1665		0	0	1	5359.7	+		19757	8722	11333	11679	15712	15712					-0.05808423364499049
PGPSGGGGG	9	Unmodified	_PGPSGGGGG_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.2841796084002	1	642.28418	641.276903	1.2987	0.00083415	8.4604	0.0054339	9.7591	0.0062681	642.28982211301	32.079	0.21718	32.075	31.93	32.148	-0.0037613	1401	64	0.77473325	0.038900077	0.7732138	158.48666	0	7.9577637						223	10	2	NaN	NaN	NaN	0.6907	1	1666	1666		0	0	1	33940	+		19758	8722	11333	11679	15713	15713					-0.05808423364499049
PGPSGGGGG	9	Unmodified						0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	642.28418	641.276903	1.446	0.00092875	7.336	0.0047118	8.782	0.0056405	642.2895213733115	31.863	0.24136	31.863	31.815	32.056	0	1401	94	0.77473325	0.057436407	0.77473325	158.48666		11.749725	-0.10617	-0.00038869	0.00075972	NaN	0	389	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57014	+		19759	8722	11333	11679							-0.05808423364499049
PGPSGGGGG	9	Unmodified						0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	642.28418	641.276903	1.7414	0.0011184	7.9403	0.0051	9.6817	0.0062184	642.2903416340234	32.2	0.07238	32.196	32.172	32.244	-0.0037613	726	46	1.1863867	0.027114391	1.1848673	242.69833		5.546768	0.1665	0.00015523	0.00014409	NaN	0	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5359.7	+		19760	8722	11333	11679							-0.05808423364499049
PGPSGGGGG	9	Unmodified						0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	642.28418	641.276903	1.2987	0.00083415	8.4604	0.0054339	9.7591	0.0062681	642.28982211301	32.079	0.21718	32.075	31.93	32.148	-0.0037613	1401	64	0.77473325	0.038900077	0.7732138	158.48666		7.9577637	0.10617	0.00033347	-0.00075972	NaN	0	223	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33940	+		19761	8722	11333	11679							-0.05808423364499049
PGPTGLEF	8	Unmodified	_PGPTGLEF_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.409045771	1	817.409046	816.401769	2.0067	0.0016403	3.5345	0.0028891	5.5411	0.0045294	817.4116571334248	32.659	0.36199	32.659	32.611	32.973	0	429	145	1.3643885	0.08596802	1.3643885	277.85968	0	17.507507						644	16	4	NaN	NaN	NaN	0.54545	1	4973	4973		28.667	6.5402	1	170650	+		19762	10171	11334	11680	15714	15714					-0.013775509480069559
PGPTGLEF	8	Unmodified	_PGPTGLEF_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.409045771	1	817.409046	816.401769	1.4521	0.001187	4.0729	0.0033292	5.525	0.0045162	817.4121371193787	32.658	0.26544	32.655	32.607	32.872	-0.0031052	426	145	1.3661768	0.08596802	1.3646574	278.2239	0	17.507507						601	12	4	NaN	NaN	NaN	0.62311	1	4865	4865		23.85	1.7241	1	169180	+		19763	10171	11334	11680	15715	15715					-0.013775509480069559
PGPTGLEF	8	Unmodified						0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	817.409046	816.401769	2.0067	0.0016403	3.5345	0.0028891	5.5411	0.0045294	817.4116571334248	32.659	0.36199	32.659	32.611	32.973	0	429	145	1.3643885	0.08596802	1.3643885	277.85968		17.507507	0.0020926	-0.00024072	-0.00013449	NaN	28.667	644	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170650	+		19764	10171	11334	11680							-0.013775509480069559
PGPTGLEF	8	Unmodified						0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	817.409046	816.401769	1.4521	0.001187	4.0729	0.0033292	5.525	0.0045162	817.4121371193787	32.658	0.26544	32.655	32.607	32.872	-0.0031052	426	145	1.3661768	0.08596802	1.3646574	278.2239		17.507507	-0.0020926	0.00019938	0.00013449	NaN	28.667	601	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169180	+		19765	10171	11334	11680							-0.013775509480069559
PGPWGPGV	8	Unmodified	_PGPWGPGV_					0	0	0		ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.69776360800006	2	383.697764	765.380974	1.7929	0.00068792	-7.4984	-0.0028771	-5.7055	-0.0021892	383.6946937723098	17.381	0.071985	17.381	17.357	17.429	0	1482	31	0.72465914	0.018571138	0.72465914	295.47437	0	7.572235						57	4	2	NaN	NaN	NaN	0.84651	1	4287	4287		1.6704	0.59834	1	4582.1			19766	6333	11335	11681	15716	15716					-0.01110096536990568
PGPWGPGV	8	Unmodified						0	0	0		ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	383.697764	765.380974	2.2262	0.00085419	-7.2761	-0.0027918	-5.0499	-0.0019376	383.69546451144504	17.402	0.095993	17.388	17.364	17.46	-0.013569	1479	37	0.72651637	0.022285342	0.7249969	296.23163		9.0867	0.0035565	9.9969E-05	0.00016889	NaN	1.6704	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4540.9			19767	6333	11335	11681							-0.01110096536990568
PGQGDGVP	8	Unmodified	_PGQGDGVP_					0	0	0		ENST00000564731.5_1_16:46761123-46772038:-|nuORF;ENSG00000140795|ENST00000394809|MYLK3	ENST00000564731.5_1_16:46761123-46772038:-|nuORF	ENST00000564731.5_1_16:46761123-46772038:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3416944873001	1	726.341694	725.334418	1.4628	0.0010625	0.1388	0.00010082	1.6016	0.0011633	726.3418475814723	21.489	0.14472	21.475	21.45	21.595	-0.014006	1332	100	0.8172735	0.061016202	0.81575406	166.78432	0	12.451828						219	7	3	NaN	NaN	NaN	0.84897	1	3605	3605		0.27539	0	1	25278			19768	3288	11336	11682	15717	15717					-0.03923581158949219
PGREGDSAGSR	11	Unmodified	_PGREGDSAGSR_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.75760071715	2	544.757601	1087.50065	1.5602	0.00084994	1.2008	0.00065413	2.761	0.0015041	544.7570821833922	22.308	0.1447	22.308	22.212	22.356	0	1227	73	0.88180584	0.044181406	0.88180584	357.67288	0	17.920593						170	7	2	NaN	NaN	NaN	0.63477	1	12266	12266		11.739	0.56853	1	21050	+		19769	10863	11337	11683	15718	15718					-0.03960179721048007
PGRNDPSV	8	Unmodified	_PGRNDPSV_					0	0	0		AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4162564139001	1	841.416256	840.40898	1.3597	0.0011441	4.5054	0.0037909	5.8652	0.004935	841.4189780150051	24.261	0.048231	24.261	24.237	24.285	0	414	52	1.3733286	0.030390263	1.3733286	279.54813	0	6.1860657						80	3	2	NaN	NaN	NaN	0.81756	1	5270	5270		6.8632	0	1	10585			19770	23	11338	11684	15719	15719					-0.017608183475658734
PGRNDPSV	8	Unmodified						0	0	0		AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|14|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	841.416256	840.40898	1.1799	0.00099279	5.0739	0.0042692	6.2538	0.005262	841.420495911045	24.26	0.072412	24.248	24.224	24.296	-0.012749	414	64	1.3733286	0.0375489	1.3718091	279.54813		7.6432495	-0.0065195	0.00016754	-0.00075972	NaN	6.8632	91	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10364			19771	23	11338	11684							-0.017608183475658734
PGRNPGLP	8	Unmodified	_PGRNPGLP_					0	0	0		ENST00000280614.3_1_4:139965844-139965895:+|nuORF	ENST00000280614.3_1_4:139965844-139965895:+|nuORF	ENST00000280614.3_1_4:139965844-139965895:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.2272195392	2	404.22722	806.439886	1.5448	0.00062444	-2.1321	-0.00086185	-0.58731	-0.00023741	404.22609918322786	16.47	0.23978	16.47	16.422	16.662	0	1473	82	0.7302302	0.050095797	0.7302302	297.4795	0	20.407928						395	11	3	NaN	NaN	NaN	0.72043	1	4846	4846		17.78	1.3637	1	87283			19772	6361	11339	11685	15720	15720					0.02892379757327035
PGSAGGPVPG	10	Unmodified	_PGSAGGPVPG_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3995437172001	1	795.399544	794.392267	2.1174	0.0016842	4.5676	0.0036331	6.6851	0.0053173	795.4026954708286	29.497	0.072374	29.49	29.466	29.538	-0.0070648	549	37	1.292695	0.021553993	1.2911756	263.37988	0	4.39151						51	4	2	NaN	NaN	NaN	0.71736	1	4597	4597		6.8632	0.77288	1	3015.6			19773	2705	11340	11686	15721	15721					-0.013153192335153108
PGSDPHGGA	9	Unmodified	_PGSDPHGGA_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.67501679320003	2	397.675017	793.335481	0.62232	0.00024748	-9.1632	-0.003644	-8.5408	-0.0033965	397.67119979822377	30.946	0.09654	30.946	30.897	30.994	0	1350	55	0.80618626	0.033265352	0.80618626	328.51294	0	13.555298						150	5	3	NaN	NaN	NaN	0.62619	1	4664	4664		4.4131	1.2597	1	20634			19774	7467	11341	11687	15722	15722					-0.06945366790034768
PGSPGLPGT	9	Unmodified	_PGSPGLPGT_					0	0	0		LMBRD1-COL19A1|1|fusion;ENSG00000082293|ENST00000620364|COL19A1	LMBRD1-COL19A1|1|fusion	LMBRD1-COL19A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4042947441002	1	782.404295	781.397018	1.5375	0.0012029	5.1393	0.004021	6.6767	0.0052239	782.4086540177707	27.277	0.096523	27.267	27.242	27.339	-0.010126	468	64	1.3411216	0.037604928	1.3396021	273.32373	0	7.663971						101	5	2	NaN	NaN	NaN	0.58159	1	4429	4429		6.2502	0.55606	1	7040.6			19775	934	11342	11688	15723	15723					-0.0024243509075176917
PGSQGAPG	8	Unmodified	_PGSQGAPG_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1;ENSG00000204262|ENST00000374866|COL5A2	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3154797368001	1	670.31548	669.308203	0.63639	0.00042659	-1.1312	-0.00075823	-0.49476	-0.00033164	670.3141879758485	31.789	0.14484	31.785	31.737	31.881	-0.0044174	1125	70	0.9442611	0.042155743	0.94274163	192.99802	0	8.616241						137	7	2	NaN	NaN	NaN	0.84512	1	2486	2486		2.4615	0	1	11102			19776	1696	11343	11689	15724	15724					-0.03967850330423062
PGSRARKQVP	10	Unmodified	_PGSRARKQVP_					0	0	0			REV__TRIB3|p.P116Rfs*94|1|0.27|ENSG00000101255|chr20:391338-391338|C/-|frameshift_variant	REV__TRIB3|p.P116Rfs*94|1|0.27|ENSG00000101255|chr20:391338-391338|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.3227138731501	2	548.322714	1094.63087	-0.17712	-9.7119E-05	-7.2987	-0.004002	-7.4758	-0.0040991	548.3190125708078	55.218	0.1203	55.217	55.169	55.29	-0.00061798	1236	55	0.876284	0.03313607	0.8747646	355.40424	0	13.439362						303	6	5	NaN	NaN	NaN	0.77421	1	12294	12294		1.9246	0.85262	1	149020	+		19777	8848	11344	11690	15725	15725					0.08734461068593191
PGSSLMQI	8	Unmodified	_PGSSLMQI_					0	0	0			REV__ENST00000495930.1_1_13:113527892-113530303:+|nuORF	REV__ENST00000495930.1_1_13:113527892-113530303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4233156267	1	832.423316	831.416039	1.0343	0.00086098	3.2811	0.0027313	4.3154	0.0035922	832.4244181385676	29.062	0.14478	29.055	29.007	29.151	-0.0077209	441	49	1.3572328	0.02862537	1.3557134	276.31982	0	5.8278503						148	7	2	NaN	NaN	NaN	0.78264	1	5035	5035		11.548	3.2582	1	15363	+		19778	8553	11345	11691	15726	15726					-0.006412217913748464
PGTGAPGW	8	Unmodified	_PGTGAPGW_					0	0	0		ENST00000593308.1_1_19:49127732-49127816:+|nuORF	ENST00000593308.1_1_19:49127732-49127816:+|nuORF	ENST00000593308.1_1_19:49127732-49127816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3518652431001	1	742.351865	741.344589	1.3779	0.0010229	4.9257	0.0036566	6.3037	0.0046795	742.3552630089855	28.846	0.16896	28.846	28.798	28.967	0	597	76	1.2639319	0.045007348	1.2639319	257.83237	0	9.181152						215	8	2	NaN	NaN	NaN	0.75682	1	3929	3929		15.013	0	1	21072			19779	7745	11346	11692	15727	15727					-0.03642973433716179
PGTGAPGW	8	Unmodified	_PGTGAPGW_					0	0	0		ENST00000593308.1_1_19:49127732-49127816:+|nuORF	ENST00000593308.1_1_19:49127732-49127816:+|nuORF	ENST00000593308.1_1_19:49127732-49127816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3518652431001	1	742.351865	741.344589	1.3047	0.00096852	4.8298	0.0035854	6.1345	0.0045539	742.3558334841227	28.869	0.21721	28.861	28.789	29.006	-0.0083504	597	82	1.2639319	0.048607945	1.2624124	257.83237	0	9.915649						294	10	3	NaN	NaN	NaN	0.75682	1	3855	3855		15.013	0	1	25498			19780	7745	11346	11692	15728	15728					-0.03642973433716179
PGVEGDTH	8	Unmodified	_PGVEGDTH_					0	0	0		ENST00000434030.1_1_3:50310607-50311493:+|nuORF;ENST00000419007.5_1_3:50310971-50311493:+|nuORF;ENST00000456210.5_1_3:50310607-50311978:+|nuORF;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B	ENST00000434030.1_1_3:50310607-50311493:+|nuORF;nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.3580728329999	1	811.358073	810.350796	1.5125	0.0012272	8.0607	0.0065401	9.5732	0.0077673	811.3660510913234	40.969	0.072075	40.969	40.897	40.969	0	492	40	1.3267875	0.023303986	1.3267875	270.23557	0	4.7464905						50	4	2	NaN	NaN	NaN	0.84455	1	4897	4897		2.7852	1.1148	1	2776.6			19781	416;6902	11347	11693	15729	15729					-0.06196499992859117
PGVGPLTP	8	Unmodified	_PGVGPLTP_					0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4192165267999	1	737.419217	736.41194	1.592	0.001174	-1.9031	-0.0014034	-0.3111	-0.00022941	737.4181374401015	29.884	0.096531	29.884	29.836	29.932	0	633	46	1.2423272	0.027027369	1.2423272	253.45604	0	5.5140686						94	5	2	NaN	NaN	NaN	0.84692	1	3864	3864		1.4396	0	1	8412.3	+		19782	8844	11348	11694	15730	15730					0.03319056777218066
PGVGPLTP	8	Unmodified						0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.419217	736.41194	1.592	0.001174	-1.9031	-0.0014034	-0.3111	-0.00022941	737.4181374401015	29.884	0.096531	29.884	29.836	29.932	0	633	46	1.2423272	0.027027369	1.2423272	253.45604		5.5140686	0.0039968	-0.00031612	0.00075972	NaN	1.4396	94	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8412.3	+		19783	8844	11348	11694							0.03319056777218066
PGVGPLTP	8	Unmodified						0	0	0			REV__ENSG00000101115|ENST00000217086|SALL4	REV__ENSG00000101115|ENST00000217086|SALL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.419217	736.41194	1.2697	0.00093629	-1.0968	-0.00080882	0.17286	0.00012747	737.418570930095	29.883	0.12064	29.876	29.828	29.948	-0.0070667	633	58	1.2423272	0.034242034	1.2408078	253.45604		6.985977	-0.0039968	0.00027845	-0.00075972	NaN	1.4396	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11407	+		19784	8844	11348	11694							0.03319056777218066
PGVGQPMLS	9	Unmodified	_PGVGQPMLS_					0	0	0		ENST00000428284.2_1_7:27168486-27168678:-|nuORF	ENST00000428284.2_1_7:27168486-27168678:-|nuORF	ENST00000428284.2_1_7:27168486-27168678:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.4498647282002	1	885.449865	884.442588	1.0084	0.00089293	8.3824	0.0074222	9.3909	0.0083152	885.4582380011632	39.068	0.048203	39.068	39.044	39.093	0	450	49	1.3518641	0.028637648	1.3518641	274.95834	0	5.8246765						72	3	3	NaN	NaN	NaN	0.56671	1	5860	5860		6.8632	1.9535	1	4819.7			19785	6960	11349	11695	15731	15731					-0.004255329000216079
PGVGQPMLS	9	Unmodified						0	0	0		ENST00000428284.2_1_7:27168486-27168678:-|nuORF	ENST00000428284.2_1_7:27168486-27168678:-|nuORF	ENST00000428284.2_1_7:27168486-27168678:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	885.449865	884.442588	1.9811	0.0017542	12.412	0.01099	14.393	0.012744	885.459967969737	39.042	0.072231	39.047	38.999	39.071	0.0046806	450	49	1.3518641	0.028631568	1.3503447	274.95834		5.823395	-0.010733	0.0018985	-0.00075972	NaN	6.8632	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4388.1			19786	6960	11349	11695							-0.004255329000216079
PGWGVGGG	8	Unmodified	_PGWGVGGG_					0	0	0		ENST00000532402.5_1_11:62392300-62392474:-|nuORF	ENST00000532402.5_1_11:62392300-62392474:-|nuORF	ENST00000532402.5_1_11:62392300-62392474:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3256504926002	1	686.32565	685.318374	1.7414	0.0011952	8.0404	0.0055183	9.7818	0.0067135	686.3306206932696	36.205	0.14466	36.205	36.181	36.326	0	690	46	1.2080631	0.027076602	1.2080631	246.80106	0	5.5316315						79	7	2	NaN	NaN	NaN	0.84876	1	2947	2947		0.39566	0	1	5190.9			19787	7454	11350	11696	15732	15732					-0.03687242605178653
PHAGAGGA	8	Unmodified	_PHAGAGGA_					0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3052494015	1	637.305249	636.297973	1.677	0.0010688	-4.8214	-0.0030727	-3.1443	-0.0020039	637.3021870666162	46.438	0.14376	46.438	46.366	46.509	0	780	46	1.1538198	0.027169585	1.1538198	236.07474	0	5.5589905						110	7	2	NaN	NaN	NaN	0.84945	1	1635	1635		0	0	1	9632.7	+		19788	9823	11351	11697	15733	15733					-0.034724132650126194
PHAGAGGA	8	Unmodified	_PHAGAGGA_					0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3052494015	1	637.305249	636.297973	0.11878	7.5696E-05	-3.6121	-0.002302	-3.4933	-0.0022263	637.3028841263233	46.412	0.23982	46.422	46.35	46.59	0.0098152	783	67	1.1520087	0.03985095	1.1504892	235.70416	0	8.1536255						230	11	2	NaN	NaN	NaN	0.84945	1	1553	1553		0	0	1	23163	+		19789	9823	11351	11697	15734	15734					-0.034724132650126194
PHAGAGGA	8	Unmodified						0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	637.305249	636.297973	1.677	0.0010688	-4.8214	-0.0030727	-3.1443	-0.0020039	637.3021870666162	46.438	0.14376	46.438	46.366	46.509	0	780	46	1.1538198	0.027169585	1.1538198	236.07474		5.5589905	0.0079294	-0.00057193	0.0016653	NaN	0	110	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9632.7	+		19790	9823	11351	11697							-0.034724132650126194
PHAGAGGA	8	Unmodified						0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	637.305249	636.297973	0.11878	7.5696E-05	-3.6121	-0.002302	-3.4933	-0.0022263	637.3028841263233	46.412	0.23982	46.422	46.35	46.59	0.0098152	783	67	1.1520087	0.03985095	1.1504892	235.70416		8.1536255	-0.0079294	0.00019875	-0.0016653	NaN	0	230	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23163	+		19791	9823	11351	11697							-0.034724132650126194
PHAGVAKG	8	Unmodified	_PHAGVAKG_					0	0	0			REV__ENST00000503064.5_1_17:49243812-49244306:+|nuORF	REV__ENST00000503064.5_1_17:49243812-49244306:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.4100488240001	1	736.410049	735.402772	0.2119	0.00015605	1.4785	0.0010888	1.6904	0.0012448	736.4108021977694	54.066	0.047894	54.065	54.065	54.113	-0.00059128	543	40	1.296287	0.023346424	1.2947675	264.47137	0	4.7631836						62	3	2	NaN	NaN	NaN	0.84887	1	3758	3758		0.32989	0	1	4278.9	+		19792	12524	11352	11698	15735	15735					0.024487082115683734
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7713308691	2	582.771331	1163.52811	2.67	0.001556	-4.5816	-0.0026701	-1.9116	-0.001114	582.7687323091336	18.82	0.24003	18.82	18.796	19.036	0	1185	91	0.90755045	0.055155218	0.90755045	367.8142	0	22.353424						610	11	5	NaN	NaN	NaN	0.59385	1	15259	15259		14.425	0	1	267130			19793	7877	11353	11699	15736	15736					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.7713308691	2	582.771331	1163.52811	2.0539	0.001197	-2.7883	-0.001625	-0.73444	-0.00042801	582.7702437965735	20.045	0.14419	20.045	19.972	20.117	0	1197	94	0.9001988	0.057033777	0.9001988	364.83472	0	23.114746						389	7	4	NaN	NaN	NaN	0.1667	1	15261	15261		33.425	9.0251	1	48841			19794	7877	11353	11699	15737	15737					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7713308691	2	582.771331	1163.52811	2.2644	0.0013196	-3.9346	-0.002293	-1.6702	-0.00097335	582.7689677022215	18.866	0.2402	18.852	18.828	19.068	-0.014059	1185	103	0.90755045	0.062515974	0.906031	367.8142	0	25.336609						745	11	5	NaN	NaN	NaN	0.59385	1	14733	14733		14.425	4.0649	1	336730			19795	7877	11353	11699	15738	15738					-0.04711412505048429
PHDTPPPVSSM	11	Unmodified	_PHDTPPPVSSM_					0	0	0		MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	MED1|p.H627D|1|0.14|ENSG00000125686|chr17:39410342-39410342|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7713308691	2	582.771331	1163.52811	2.2452	0.0013084	-3.6343	-0.002118	-1.3891	-0.00080951	582.7691785001393	18.746	0.071997	18.731	18.708	18.78	-0.014059	1206	73	0.894683	0.0441432	0.89316356	362.59924	0	17.890472						302	4	5	NaN	NaN	NaN	0.14658	1	14736	14736		35.296	6.4009	1	226020			19796	7877	11353	11699	15739	15739					-0.04711412505048429
PHEFRPRC	8	Unmodified	_PHEFRPRC_					0	0	0			REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2559853661501	2	521.255985	1040.49742	2.2011	0.0011474	-1.4807	-0.00077185	0.72038	0.0003755	521.2554195421534	18.508	0.11989	18.508	18.46	18.58	0	1269	43	0.8560222	0.02580595	0.8560222	347.41083	0	10.473175						123	6	3	NaN	NaN	NaN	0.84756	1	10228	10228		1.072	0	1	10028	+		19797	13336	11354	11700	15740	15740					-0.021211013087622632
PHEFRPRC	8	Unmodified						0	0	0			REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.255985	1040.49742	2.2011	0.0011474	-1.4807	-0.00077185	0.72038	0.0003755	521.2554195421534	18.508	0.11989	18.508	18.46	18.58	0	1269	43	0.8560222	0.02580595	0.8560222	347.41083		10.473175	-0.015652	0.00011062	0.00075972	NaN	1.072	123	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10028	+		19798	13336	11354	11700							-0.021211013087622632
PHEFRPRC	8	Unmodified						0	0	0			REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.255985	1040.49742	1.9793	0.0010317	-1.676	-0.00087365	0.30322	0.00015806	521.2552068587695	18.554	0.095984	18.54	18.516	18.612	-0.01395	1269	43	0.8560222	0.025803149	0.85450274	347.41083		10.472015	0.015652	-9.2986E-05	-0.00075972	NaN	1.072	123	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10019	+		19799	13336	11354	11700							-0.021211013087622632
PHGAAAEL	8	Unmodified	_PHGAAAEL_					0	0	0		ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.3889790309	1	765.388979	764.381703	1.543	0.001181	-3.3134	-0.002536	-1.7704	-0.001355	765.3868938815134	28.894	0.16897	28.894	28.894	29.063	0	534	58	1.3016734	0.034110665	1.3016734	265.38605	0	6.9544983						182	8	2	NaN	NaN	NaN	0.82332	1	4275	4275		6.0903	0	1	28385			19800	6107	11355	11701	15741	15741					-0.009913018879615265
PHGGAAGG	8	Unmodified	_PHGGAAGG_					0	0	0		ENST00000370126.1_1_1:100731885-100732210:+|nuORF;ENST00000370128.8_1_1:100731885-100733749:+|nuORF;ENST00000260563.4_1_1:100731885-100733749:+|nuORF;ENST00000498617.5_1_1:100731885-100733749:+|nuORF	ENST00000370126.1_1_1:100731885-100732210:+|nuORF	ENST00000370126.1_1_1:100731885-100732210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2895993373002	1	623.289599	622.282323	1.7998	0.0011218	2.5452	0.0015864	4.345	0.0027082	623.2904787616361	56.157	0.047989	56.157	56.109	56.157	0	804	37	1.1393254	0.021750927	1.1393254	233.21944	0	4.4523926						42	3	2	NaN	NaN	NaN	0.84945	1	1187	1187		0	0	1	2614.4			19801	6298	11356	11702	15742	15742					-0.0439269978203356
PHGGGAGQ	8	Unmodified	_PHGGGAGQ_					0	0	0			REV__ENST00000302754.5_1_19:12903636-12903888:+|nuORF	REV__ENST00000302754.5_1_19:12903636-12903888:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3110630609001	1	680.311063	679.303787	2.0783	0.0014139	0.71292	0.00048501	2.7912	0.0018989	680.3119236517814	16.826	0.1677	16.813	16.669	16.837	-0.013294	1095	34	0.9625867	0.02014625	0.96106726	196.68561	0	4.1164856						72	8	2	NaN	NaN	NaN	0.84876	1	2743	2743		0.39566	0	1	4504.2	+		19802	11662	11357	11703	15743	15743					-0.04869314753329945
PHGGGGGG	8	Unmodified	_PHGGGGGG_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENSG00000103241|ENST00000262426|FOXF1	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2582992089001	1	595.258299	594.251023	0.62912	0.00037449	8.3613	0.0049772	8.9905	0.0053516	595.2675684273532	31.234	0.19305	31.229	31.109	31.302	-0.0050716	1200	79	0.89836043	0.04778564	0.896841	184.08011	0	9.791611						357	9	3	NaN	NaN	NaN	0.84876	1	547	547		0.39566	0	1	36215			19803	4204	11358	11704	15744	15744					-0.06233272816132285
PHGGYHSHY	9	Unmodified	_PHGGYHSHY_					0	0	0		HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant;ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7281149962001	2	527.728115	1053.44168	1.1025	0.00058181	-7.4071	-0.0039089	-6.3046	-0.0033271	527.7238884264879	13.949	0.11985	13.938	13.842	13.962	-0.010672	1290	58	0.84311575	0.03505075	0.8415963	342.11795	0	14.222839						160	6	2	NaN	NaN	NaN	0.45297	1	10545	10545		11.548	0.37812	1	18964			19804	1494	11359	11705	15745	15745					-0.08290611224697386
PHGLAGGG	8	Unmodified	_PHGLAGGG_					0	0	0			REV__ENSG00000145494|ENST00000274137|NDUFS6	REV__ENSG00000145494|ENST00000274137|NDUFS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3365495299003	1	665.33655	664.329273	-0.036594	-2.4347E-05	2.4519	0.0016314	2.4153	0.001607	665.3376846805662	56.779	0.096146	56.778	56.754	56.85	-0.00056458	585	55	1.2711272	0.032372475	1.2696078	259.84534	0	6.6176147						125	5	2	NaN	NaN	NaN	0.84876	1	2347	2347		0.39566	0	1	12846	+		19805	9928	11360	11706	15746	15746					-0.016318402308911573
PHHLHAHAHY	10	Unmodified	_PHHLHAHAHY_					0	0	0			REV__ENSG00000107249|ENST00000381971|GLIS3	REV__ENSG00000107249|ENST00000381971|GLIS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.20044578146667	3	407.200446	1218.57951	1.5114	0.00061545	6.5555	0.0026694	8.0669	0.0032849	407.20324132505	11.836	0.072119	11.836	11.836	11.908	0	1485	49	0.72280174	0.02971381	0.72280174	439.17145	0	18.054016						72	4	2	NaN	NaN	NaN	0.7459	1	16946	16946		2.1026	0	1	5266.9	+		19806	9008	11361	11707	15747	15747					-0.021038629054601188
PHIHRYLRR	9	Unmodified	_PHIHRYLRR_					0	0	0			REV__nc|ENSG00000168334|Q702N8-2|XIRP1	REV__nc|ENSG00000168334|Q702N8-2|XIRP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.36524738985	2	624.365247	1246.71594	0.84561	0.00052797	8.6411	0.0053952	9.4867	0.0059232	624.3711291092982	37.506	0.12045	37.506	37.458	37.578	0	1233	64	0.87812483	0.03866917	0.87812483	355.61014	0	15.659668						197	6	2	NaN	NaN	NaN	0.66529	1	17697	17697		2.1763	0.47414	1	20888	+		19807	10506	11362	11708	15748	15748					0.10245251325045501
PHIHRYLRR	9	Unmodified						0	0	0			REV__nc|ENSG00000168334|Q702N8-2|XIRP1	REV__nc|ENSG00000168334|Q702N8-2|XIRP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.365247	1246.71594	0.84561	0.00052797	8.6411	0.0053952	9.4867	0.0059232	624.3711291092982	37.506	0.12045	37.506	37.458	37.578	0	1233	64	0.87812483	0.03866917	0.87812483	355.61014		15.659668	-0.00015833	-0.0011842	-0.00016058	NaN	2.1763	197	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20888	+		19808	10506	11362	11708							0.10245251325045501
PHIYVALAF	9	Unmodified	_PHIYVALAF_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B;REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7896526205001	2	515.789653	1029.56475	1.5535	0.00080129	-0.044716	-2.3064E-05	1.5088	0.00077822	515.7897611324671	26.263	0.193	26.252	26.228	26.421	-0.011137	1260	82	0.8615505	0.04974979	0.8600311	349.70294	0	20.19339						217	9	3	NaN	NaN	NaN	0.26823	1	9572	9572		20.952	3.1722	1	21196	+		19809	11064;8480	11363	11709	15749	15749					0.051152521738458745
PHIYVALAF	9	Unmodified						0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B;REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.789653	1029.56475	2.317	0.0011951	-0.58968	-0.00030415	1.7273	0.00089093	515.7894673580513	26.239	0.12066	26.239	26.215	26.336	0	1266	67	0.85786515	0.040525913	0.85786515	348.20706		16.449432	-0.0063886	-0.00029192	-0.001083	NaN	20.952	201	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21552	+		19810	11064;8480	11363	11709							0.051152521738458745
PHIYVALAF	9	Unmodified						0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B;REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.789653	1029.56475	1.5535	0.00080129	-0.044716	-2.3064E-05	1.5088	0.00077822	515.7897611324671	26.263	0.193	26.252	26.228	26.421	-0.011137	1260	82	0.8615505	0.04974979	0.8600311	349.70294		20.19339	0.0063886	0.00027025	0.001083	NaN	20.952	217	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21196	+		19811	11064;8480	11363	11709							0.051152521738458745
PHKHLEEPV	9	Unmodified	_PHKHLEEPV_					0	0	0			REV__ENSG00000188056|ENST00000341495|TREML4	REV__ENSG00000188056|ENST00000341495|TREML4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2905480775	2	543.290548	1084.56654	1.3351	0.00072532	-2.8801	-0.0015647	-1.545	-0.0008394	543.288934996707	27.446	0.096556	27.446	27.422	27.519	0	1206	106	0.894683	0.06434423	0.894683	362.90833	0	26.099854						210	5	3	NaN	NaN	NaN	0.53206	1	12175	12175		8.2903	0	1	21845	+		19812	11046	11364	11710	15750	15750					0.027642611918054172
PHKHLEEPV	9	Unmodified						0	0	0			REV__ENSG00000188056|ENST00000341495|TREML4	REV__ENSG00000188056|ENST00000341495|TREML4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.290548	1084.56654	1.3351	0.00072532	-2.8801	-0.0015647	-1.545	-0.0008394	543.288934996707	27.446	0.096556	27.446	27.422	27.519	0	1206	106	0.894683	0.06434423	0.894683	362.90833		26.099854	-0.018973	8.017E-05	0.00075972	NaN	8.2903	210	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21845	+		19813	11046	11364	11710							0.027642611918054172
PHKHLEEPV	9	Unmodified						0	0	0			REV__ENSG00000188056|ENST00000341495|TREML4	REV__ENSG00000188056|ENST00000341495|TREML4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.290548	1084.56654	1.1049	0.0006003	-3.0561	-0.0016603	-1.9511	-0.00106	543.2889723068638	27.494	0.16891	27.484	27.412	27.581	-0.009552	1206	97	0.894683	0.05882591	0.89316356	362.90833		23.86142	0.018973	-0.00011104	-0.00075972	NaN	8.2903	192	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25253	+		19814	11046	11364	11710							0.027642611918054172
PHLTALMAGEQ	11	Unmodified	_PHLTALMAGEQ_					0	0	0		GPR161|p.G381E|1|0.32|ENSG00000143147|chr1:168090626-168090626|C/T|missense_variant	GPR161|p.G381E|1|0.32|ENSG00000143147|chr1:168090626-168090626|C/T|missense_variant	GPR161|p.G381E|1|0.32|ENSG00000143147|chr1:168090626-168090626|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2949731409001	2	584.294973	1166.57539	1.6357	0.00095575	3.2081	0.0018745	4.8438	0.0028302	584.2975343295325	24.454	0.24117	24.454	24.406	24.647	0	1188	67	0.90571284	0.04042965	0.90571284	367.0582	0	16.384918						267	11	4	NaN	NaN	NaN	0.5528	1	15362	15362		16.584	1.4088	1	38051			19815	7808	11365	11711	15751	15751					-0.0012313323402395326
PHLVDLQL	8	Unmodified	_PHLVDLQL_					0	0	0			REV__ENST00000544007.5_1_14:31061550-31062714:+|nuORF	REV__ENST00000544007.5_1_14:31061550-31062714:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.7714598673501	2	467.77146	933.528367	0.82031	0.00038372	-2.2579	-0.0010562	-1.4376	-0.00067248	467.77032741547146	25.274	0.21707	25.262	25.214	25.431	-0.012011	1353	61	0.8043377	0.036957502	0.80281824	326.923	0	15.021393						175	10	2	NaN	NaN	NaN	0.62311	1	6552	6552		23.85	3.295	1	14902	+		19816	12707	11366	11712	15752	15752					0.05894375277148356
PHLVGGGG	8	Unmodified	_PHLVGGGG_					0	0	0		ENST00000229340.9_1_12:120533319-120533514:-|nuORF	ENST00000229340.9_1_12:120533319-120533514:-|nuORF	ENST00000229340.9_1_12:120533319-120533514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3678496583003	1	693.36785	692.360573	0.72759	0.00050449	2.5152	0.0017439	3.2428	0.0022484	693.3674769118026	31.235	0.024109	31.235	31.235	31.259	0	759	88	1.1664921	0.052443624	1.1664921	238.26088	0	10.711838						78	2	2	NaN	NaN	NaN	0.84945	1	3090	3090		0	0	1	7107.4			19817	6245	11367	11713	15753	15753					0.002087328032075675
PHMPVTHQFT	10	Unmodified	_PHMPVTHQFT_					0	0	0			REV__ENST00000529498.1_1_11:124545562-124545739:+|nuORF	REV__ENST00000529498.1_1_11:124545562-124545739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.78985797325	2	597.789858	1193.56516	0.80724	0.00048256	4.6403	0.0027739	5.4475	0.0032565	597.7933504317882	12.652	0.072019	12.652	12.652	12.724	0	1209	25	0.892844	0.0147128105	0.892844	361.7472	0	5.9610596						52	4	2	NaN	NaN	NaN	0.68732	1	16257	16257		8.9191	1.3315	1	3876.4	+		19818	12641	11368	11714	15754	15754					-0.023876961686028153
PHNKSLAQNNN	11	Unmodified	_PHNKSLAQNNN_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.8076249149501	2	618.807625	1235.6007	1.8341	0.001135	1.5715	0.00097243	3.4056	0.0021074	619.3094178311974	25.708	0.12063	25.708	25.66	25.781	0	1161	94	0.9222442	0.056886137	0.9222442	373.51376	0	23.039185						397	6	5	NaN	NaN	NaN	0.62211	1	17419	17419		12.57	0.52101	1	76174	+		19819	8361	11369	11715	15755	15755					-0.007679423872332336
PHNKSLAQNNN	11	Unmodified						0	0	0			REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.807625	1235.6007	1.8341	0.001135	1.5715	0.00097243	3.4056	0.0021074	619.3094178311974	25.708	0.12063	25.708	25.66	25.781	0	1161	94	0.9222442	0.056886137	0.9222442	373.51376		23.039185	-0.0061289	-0.0014577	0.00075972	NaN	12.57	397	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76174	+		19820	8361	11369	11715							-0.007679423872332336
PHNKSLAQNNN	11	Unmodified						0	0	0			REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-6|KMT2E	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.807625	1235.6007	1.58	0.00097774	4.378	0.0027092	5.9581	0.0036869	619.3105542315258	25.732	0.14475	25.721	25.624	25.769	-0.0116	1161	100	0.9222442	0.060549676	0.92072475	373.51376		24.52295	0.0061289	0.0020157	-0.00075972	NaN	12.57	303	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61156	+		19821	8361	11369	11715							-0.007679423872332336
PHNRYKMWFS	10	Unmodified	_PHNRYKMWFS_					0	0	0		ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3296816255	2	683.329682	1364.64481	2.4288	0.0016597	5.8148	0.0039734	8.2436	0.0056331	683.3333367778005	18.722	0.14398	18.708	18.636	18.78	-0.014059	1095	28	0.9625867	0.016483307	0.96106726	389.44507	0	6.6688538						62	7	2	NaN	NaN	NaN	0.76892	1	18819	18819		3.2116	0.32214	1	4069.4			19822	7607	11370	11716	15756	15756					-0.02292629494627363
PHPASHPVR	9	Unmodified	_PHPASHPVR_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|26|2|sense;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|21|2|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|17|3|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|26|2|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|26|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.26995002115	2	499.26995	996.525347	2.1231	0.00106	0.92288	0.00046077	3.046	0.0015208	499.2697778582925	19.084	0.047962	19.084	19.06	19.108	0	1308	28	0.83204526	0.016610146	0.83204526	337.87448	0	6.744995						30	3	2	NaN	NaN	NaN	0.62619	1	8447	8447		4.4131	0	1	2036.9			19823	13700	11371	11717	15757	15757					0.02694544942983157
PHPDCTYN	8	Unmodified	_PHPDCTYN_					0	0	0			REV__ENST00000436595.1_1_1:207669690-207743292:+|nuORF	REV__ENST00000436595.1_1_1:207669690-207743292:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.3723426886999	1	946.372343	945.365066	0.25062	0.00023718	-0.83591	-0.00079108	-0.58529	-0.0005539	946.3724635624116	53.672	0.064808	53.671	53.647	53.712	-0.00059128	315	43	1.4322147	0.024935484	1.4306953	291.0134	0	5.066681						61	3	2	NaN	NaN	NaN	0.84887	1	6802	6802		0.32989	0	1	3913.8	+		19824	11213	11372	11718	15758	15758					-0.10980170836228353
PHPFLLQYTCM	11	Unmodified	_PHPFLLQYTCM_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.55087637910003	3	450.550876	1348.6308	1.3861	0.00062453	-9.4168	-0.0042427	-8.0307	-0.0036182	450.88050939683666	11.692	0.14398	11.692	11.644	11.788	0	1458	34	0.7395112	0.020413876	0.7395112	448.8393	0	12.389984						107	7	3	NaN	NaN	NaN	0.77356	1	19523	19523		1.3696	0.14068	1	9124.1	+		19825	8566	11373	11719	15759	15759					-0.02957043037895346
PHPHPHPYPHL	11	Unmodified	_PHPHPHPYPHL_					0	0	0			REV__ENSG00000139289|ENST00000266671|PHLDA1	REV__ENSG00000139289|ENST00000266671|PHLDA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8359884239001	2	664.835988	1327.65742	1.7828	0.0011853	-5.4455	-0.0036204	-3.6627	-0.0024351	664.8328446896955	15.582	0.072031	15.582	15.534	15.606	0	1113	40	0.9515937	0.023827195	0.9515937	385.1051	0	9.642731						59	4	2	NaN	NaN	NaN	0.65204	1	19220	19220		10.605	3.6206	1	4368	+		19826	9763	11374	11720	15760	15760					0.006701499599330418
PHPHTHPAPD	10	Unmodified	_PHPHTHPAPD_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2623219543001	2	553.262322	1104.51009	1.3911	0.00076965	8.1269	0.0044963	9.518	0.005266	553.2666873115859	12.82	0.28825	12.82	12.748	13.036	0	1272	130	0.854179	0.07917982	0.854179	346.40027	0	32.11023						1346	13	6	NaN	NaN	NaN	0.091497	1	13031	13031		47.136	4.8182	1	1506400	+		19827	11406	11375	11721	15761	15761					-0.03798366644855378
PHPWFAPV	8	Unmodified	_PHPWFAPV_					0	0	0			REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.488299145	1	950.488299	949.481023	2.3279	0.0022126	-3.4416	-0.0032712	-1.1137	-0.0010586	950.4860649573533	25.467	0.096542	25.455	25.431	25.527	-0.012011	279	55	1.4535767	0.032036066	1.4520572	295.33557	0	6.5090637						79	5	2	NaN	NaN	NaN	0.83849	1	6943	6943		4.0537	1.5922	1	4900.9	+		19828	13311	11376	11722	15762	15762					0.004261407967987907
PHPWFAPV	8	Unmodified						0	0	0			REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	950.488299	949.481023	2.087	0.0019837	-5.7891	-0.0055025	-3.7021	-0.0035188	950.484631154525	25.467	0.07239	25.467	25.443	25.515	0	282	49	1.4517976	0.028458476	1.4517976	294.9741		5.782135	0.0061528	-0.0010643	-0.00012984	NaN	4.0537	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4875.9	+		19829	13311	11376	11722							0.004261407967987907
PHPWFAPV	8	Unmodified						0	0	0			REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	REV__SIRPG|p.S6F|1|0.19|ENSG00000089012|chr20:1657698-1657698|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	950.488299	949.481023	2.3279	0.0022126	-3.4416	-0.0032712	-1.1137	-0.0010586	950.4860649573533	25.467	0.096542	25.455	25.431	25.527	-0.012011	279	55	1.4535767	0.032036066	1.4520572	295.33557		6.5090637	-0.0061528	0.001167	0.00012984	NaN	4.0537	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4900.9	+		19830	13311	11376	11722							0.004261407967987907
PHQALLLFLL	10	Unmodified	_PHQALLLFLL_					0	0	0		ENST00000454228.1_1_X:100877992-100878142:-|nuORF	ENST00000454228.1_1_X:100877992-100878142:-|nuORF	ENST00000454228.1_1_X:100877992-100878142:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8606092256501	2	582.860609	1163.70667	1.6382	0.00095483	-10.809	-0.0062999	-9.1705	-0.0053451	582.8541018404339	27.518	0.072407	27.508	27.484	27.557	-0.009552	1128	28	0.9424274	0.016502857	0.94090796	381.94858	0	6.6882935						58	4	2	NaN	NaN	NaN	0.77884	1	14755	14755		0.79988	0.10873	1	5097.5			19831	7053	11377	11723	15763	15763					0.13136045196188206
PHSESIESL	9	Unmodified	_PHSESIESL_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7430963584	2	499.743096	997.47164	2.0773	0.0010381	-1.4438	-0.00072152	0.63351	0.00031659	499.7420797556397	17.813	0.095934	17.813	17.789	17.885	0	1323	94	0.8228144	0.05720049	0.8228144	334.1217	0	23.227509						266	5	3	NaN	NaN	NaN	0.10956	1	8470	8470		34.439	4.8405	1	34186	+		19832	8368	11378	11724	15764	15764					-0.027197170700446804
PHSFNRDETII	11	Unmodified	_PHSFNRDETII_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.5579643883334	3	443.557964	1327.65206	1.1147	0.00049444	8.6352	0.0038302	9.75	0.0043247	443.56207888985796	21.224	0.072258	21.224	21.2	21.272	0	1380	28	0.7876915	0.016655207	0.7876915	478.1583	0	10.110321						36	4	2	NaN	NaN	NaN	0.76803	1	19224	19224		1.6806	0.97233	1	2899			19833	5866	11379	11725	15765	15765					0.001343815868267484
PHSLPHFL	8	Unmodified	_PHSLPHFL_					0	0	0		ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.25851966759996	2	474.25852	946.502486	0.88692	0.00042063	-1.9095	-0.00090561	-1.0226	-0.00048498	474.2581504854871	24.26	0.048265	24.248	24.224	24.272	-0.012749	1326	61	0.8209676	0.03694147	0.81944823	333.6159	0	15.011871						73	3	2	NaN	NaN	NaN	0.84651	1	6869	6869		1.6704	0	1	7085			19834	7001	11380	11726	15766	15766					0.027095258255030785
PHSLPHFL	8	Unmodified						0	0	0		ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.25852	946.502486	1.0947	0.00051919	-4.4694	-0.0021196	-3.3746	-0.0016004	474.256045669764	24.261	0.024105	24.261	24.237	24.261	0	1335	58	0.8154261	0.035092473	0.8154261	331.364		14.260529	0.0065195	-0.0013325	-0.002011	NaN	1.6704	69	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6258			19835	7001	11380	11726							0.027095258255030785
PHSSGAWAG	9	Unmodified	_PHSSGAWAG_					0	0	0			REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	869.3900416634001	1	869.390042	868.382765	1.0321	0.00089733	-5.7541	-0.0050025	-4.7219	-0.0041052	869.3848059043792	35.818	0.072296	35.819	35.794	35.867	0.00052643	384	61	1.3911947	0.035728455	1.3896753	283.0381	0	7.268921						92	4	2	NaN	NaN	NaN	0.45297	1	5499	5499		11.548	2.4253	1	6379.3	+		19836	12917	11381	11727	15767	15767					-0.056690875190497536
PHSSGAWAG	9	Unmodified						0	0	0			REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	869.390042	868.382765	1.2738	0.0011074	-5.7952	-0.0050383	-4.5214	-0.0039308	869.3856014391953	35.82	0.072308	35.82	35.795	35.868	0	390	73	1.3876231	0.042878747	1.3876231	282.31143		8.723633	0.00050888	-2.1055E-05	-0.0010261	NaN	11.548	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5400.8	+		19837	12917	11381	11727							-0.056690875190497536
PHSSGAWAG	9	Unmodified						0	0	0			REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	REV__ENST00000591292.5_1_16:4851717-4851876:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	869.390042	868.382765	1.0321	0.00089733	-5.7541	-0.0050025	-4.7219	-0.0041052	869.3848059043792	35.818	0.072296	35.819	35.794	35.867	0.00052643	384	61	1.3911947	0.035728455	1.3896753	283.0381		7.268921	-0.00050888	1.4671E-05	0.0010261	NaN	11.548	92	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6379.3	+		19838	12917	11381	11727							-0.056690875190497536
PHSSLAAT	8	Unmodified	_PHSSLAAT_					0	0	0			REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.2034100918999	2	392.20341	782.392267	1.7399	0.0006824	-3.4854	-0.001367	-1.7455	-0.00068459	392.2019475933583	25.298	0.1447	25.286	25.238	25.382	-0.012011	1425	40	0.7599118	0.024094045	0.75839233	309.72998	0	9.820404						110	7	2	NaN	NaN	NaN	0.84207	1	4440	4440		3.5732	0	1	12357	+		19839	11551	11382	11728	15768	15768					-0.007633192335447347
PHSSLAAT	8	Unmodified						0	0	0			REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	392.20341	782.392267	1.9524	0.00076576	-4.4951	-0.001763	-2.5426	-0.00099723	392.2016431211326	25.081	0.048262	25.081	25.081	25.129	0	1443	25	0.7487872	0.014837563	0.7487872	305.19577		6.047577	-0.10242	-0.00059322	-0.0048026	NaN	3.5732	30	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1464	+		19840	11551	11382	11728							-0.007633192335447347
PHSSLAAT	8	Unmodified						0	0	0			REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	REV__ENST00000262375.10_1_16:4504911-4505835:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	392.20341	782.392267	1.7399	0.0006824	-3.4854	-0.001367	-1.7455	-0.00068459	392.2019475933583	25.298	0.1447	25.286	25.238	25.382	-0.012011	1425	40	0.7599118	0.024094045	0.75839233	309.72998		9.820404	0.10242	0.00019876	0.0048026	NaN	3.5732	110	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12357	+		19841	11551	11382	11728							-0.007633192335447347
PHTHTYIGEMR	11	Unmodified	_PHTHTYIGEMR_					0	0	0			REV__ENST00000532208.5_1_11:62437584-62438988:-|nuORF	REV__ENST00000532208.5_1_11:62437584-62438988:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.8837945279666	3	447.883795	1340.62955	1.349	0.00060418	7.5243	0.00337	8.8733	0.0039742	447.8868935588328	19.755	0.096292	19.741	19.717	19.813	-0.014141	1371	34	0.79324204	0.020347536	0.7917226	481.47974	0	12.350494						108	5	3	NaN	NaN	NaN	0.77278	1	18552	18552		0.43218	0	1	8681.1	+		19842	12155	11383	11729	15769	15769					-0.027135410824939754
PHTLWASVVS	10	Unmodified	_PHTLWASVVS_					0	0	0		ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	ENST00000561152.1_1_15:57211715-57212066:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7929235909501	2	548.792924	1095.57129	1.149	0.00063059	2.3562	0.001293	3.5052	0.0019236	548.7939246140128	22.259	0.12049	22.246	22.222	22.342	-0.013731	1251	70	0.8670771	0.042342782	0.8655577	351.6663	0	17.173248						139	6	2	NaN	NaN	NaN	0.62764	1	12336	12336		13.003	1.8325	1	17786			19843	7597	11384	11730	15770	15770					0.027331453345595946
PHTRGVSLLN	10	Unmodified	_PHTRGVSLLN_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3092721469002	2	547.309272	1092.60399	1.3573	0.00074289	-3.909	-0.0021394	-2.5516	-0.0013965	547.3073148209903	14.764	0.14392	14.752	14.656	14.8	-0.011738	1236	37	0.876284	0.022093058	0.8747646	355.4124	0	8.960754						85	7	2	NaN	NaN	NaN	0.76892	1	12199	12199		3.2116	0.058268	1	7033.4	+		19844	8561	11385	11731	15771	15771					0.06139352457444147
PHTSAAKW	8	Unmodified	_PHTSAAKW_					0	0	0			REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1	REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.23250188235	2	449.232502	896.450451	0.76959	0.00034573	-10.373	-0.0046599	-9.6034	-0.0043141	449.2278784382344	24.261	0.048231	24.261	24.237	24.285	0	1377	58	0.7895419	0.03516102	0.7895419	321.10175	0	14.299744						91	3	3	NaN	NaN	NaN	0.77489	1	6007	6007		12.588	5.0475	1	10654	+		19845	13511	11386	11732	15772	15772					-0.0019163758825015975
PHTSAAKW	8	Unmodified						0	0	0			REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1	REV__tr|U7SUA1|U7SUA1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01355PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	449.232502	896.450451	0.76959	0.00034573	-10.373	-0.0046599	-9.6034	-0.0043141	449.2278784382344	24.261	0.048231	24.261	24.237	24.285	0	1377	58	0.7895419	0.03516102	0.7895419	321.10175		14.299744	-0.0055461	0.0019314	0.0016849	NaN	12.588	91	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10654	+		19846	13511	11386	11732							-0.0019163758825015975
PHTWQQKR	8	Unmodified	_PHTWQQKR_					0	0	0		nc|ENSG00000136295|Q9C0H2-3|TTYH3;nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3	nc|ENSG00000136295|Q9C0H2-3|TTYH3	nc|ENSG00000136295|Q9C0H2-3|TTYH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7885069150501	2	540.788507	1079.56246	1.6147	0.0008732	4.2074	0.0022753	5.8221	0.0031485	541.2923495775078	48.329	0.071873	48.334	48.286	48.358	0.004818	1293	22	0.84127116	0.0129134655	0.8397517	341.26282	0	5.238373						27	4	2	NaN	NaN	NaN	0.84455	1	11660	11660		2.7852	0.60885	1	1117			19847	3012	11387	11733	15773	15773					0.02586216488748505
PHVALTPT	8	Unmodified	_PHVALTPT_					0	0	0			REV__ENST00000377328.5_1_10:18439815-18825042:+|nuORF	REV__ENST00000377328.5_1_10:18439815-18825042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.4672293518998	1	835.467229	834.459953	1.8534	0.0015485	-4.9096	-0.0041018	-3.0562	-0.0025533	835.463396889108	53.755	0.12959	53.755	53.626	53.755	0	381	46	1.3929803	0.026780725	1.3929803	283.5809	0	5.4519653						151	5	3	NaN	NaN	NaN	0.84876	1	5193	5193		0.39566	0	1	26654	+		19848	11732	11388	11734	15774	15774					0.036101306972568636
PHVRCKVRHT	10	Unmodified	_PHVRCKVRHT_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.56461917370007	3	411.564619	1231.67203	1.6493	0.00067878	-4.7359	-0.0019491	-3.0866	-0.0012704	411.56237545076766	16.994	0.04797	16.981	16.981	17.029	-0.013294	1422	70	0.7617651	0.04263258	0.7602457	462.79053	0	25.9003						64	3	2	NaN	NaN	NaN	0.63397	1	16599	16599		7.2894	2.0047	1	7827.9	+		19849	10688	11389	11735	15775	15775					0.06545898836429842
PHWPARVHE	9	Unmodified	_PHWPARVHE_					0	0	0		PSIP1|p.D26H|1|0.35|ENSG00000164985|chr9:15506634-15506634|C/G|missense_variant	PSIP1|p.D26H|1|0.35|ENSG00000164985|chr9:15506634-15506634|C/G|missense_variant	PSIP1|p.D26H|1|0.35|ENSG00000164985|chr9:15506634-15506634|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7885069150501	2	564.788507	1127.56246	1.7926	0.0010124	7.7581	0.0043817	9.5507	0.0053941	564.7926670132042	16.587	0.28762	16.574	16.454	16.741	-0.012995	1224	85	0.883646	0.051550567	0.88212657	358.2599	0	20.90033						394	13	3	NaN	NaN	NaN	0.33629	1	13557	13557		16.584	1.4088	1	69252			19850	8106	11390	11736	15776	15776					0.0037821648875251412
PHYRVQLL	8	Unmodified	_PHYRVQLL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5890758221	1	1025.58908	1024.5818	1.6118	0.0016531	-7.5322	-0.007725	-5.9204	-0.0060719	1025.5814314041043	35.747	0.19293	35.747	35.675	35.868	0	156	70	1.5263584	0.04074657	1.5263584	309.798	0	8.270111						141	9	2	NaN	NaN	NaN	0.72043	1	9571	9571		17.78	0	1	9315.8			19851	1864	11391	11737	15777	15777					0.07049172779670698
PHYRVQLL	8	Unmodified						0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1025.58908	1024.5818	1.194	0.0012245	-14.271	-0.014636	-13.077	-0.013412	1025.5745966929542	35.529	0.07238	35.529	35.529	35.602	0.00053024	177	46	1.5139546	0.026587963	1.5124352	307.28052		5.3964233	-0.10901	-0.0027818	-0.0069616	NaN	17.78	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5055.7			19852	1864	11391	11737							0.07049172779670698
PIAPDEPL	8	Unmodified	_PIAPDEPL_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4509105857	1	851.450911	850.443634	2.2678	0.0019309	-1.1484	-0.00097777	1.1195	0.00095318	851.4490471563238	23.562	0.048149	23.562	23.562	23.61	0	414	28	1.3733286	0.016088843	1.3733286	279.4951	0	3.274353						37	3	2	NaN	NaN	NaN	0.81251	1	5393	5393		7.5404	0	1	2118.5	+		19853	9629	11392	11738	15778	15778					0.012430047405132427
PIAPDEPL	8	Unmodified						0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	851.450911	850.443634	2.2678	0.0019309	-1.1484	-0.00097777	1.1195	0.00095318	851.4490471563238	23.562	0.048149	23.562	23.562	23.61	0	414	28	1.3733286	0.016088843	1.3733286	279.4951		3.274353	-0.0053572	0.0018211	-0.00013402	NaN	7.5404	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2118.5	+		19854	9629	11392	11738							0.012430047405132427
PIAPDEPL	8	Unmodified						0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.450911	850.443634	2.7107	0.0023081	-5.0456	-0.0042961	-2.3349	-0.001988	851.4469655511148	23.585	0.048239	23.572	23.548	23.596	-0.013048	411	31	1.3751161	0.017875552	1.3735967	279.85886		3.6380005	0.0053572	-0.0014972	0.00013402	NaN	7.5404	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216.1	+		19855	9629	11392	11738							0.012430047405132427
PIAPEIAL	8	Unmodified	_PIAPEIAL_					0	0	0		nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC	nc|ENSG00000154582|Q15369-2|ELOC	nc|ENSG00000154582|Q15369-2|ELOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4923814698999	1	823.492381	822.485105	2.1825	0.0017973	-0.28398	-0.00023385	1.8986	0.0015634	823.4921926282731	28.026	0.12063	28.026	27.977	28.098	0	480	79	1.3339561	0.04658079	1.3339561	271.62888	0	9.485077						270	6	4	NaN	NaN	NaN	0.30832	1	5055	5055		41.46	5.4237	1	62032			19856	3851	11393	11739	15779	15779					0.06676185499838994
PIAQLLTLL	9	Unmodified	_PIAQLLTLL_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.6342946802002	1	981.634295	980.627018	1.6495	0.0016192	0.24772	0.00024317	1.8972	0.0018624	981.6350973523856	34.709	0.28922	34.708	34.612	34.901	-0.00064468	180	97	1.5121819	0.056729794	1.5106624	307.1033	0	11.521057						343	13	3	NaN	NaN	NaN	0.030391	1	7742	7742		58.599	5.9751	1	62094	+		19857	11394	11394	11740	15780	15780					0.13592978522194699
PIAQLLTLL	9	Unmodified						0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	981.634295	980.627018	1.6495	0.0016192	0.24772	0.00024317	1.8972	0.0018624	981.6350973523856	34.709	0.28922	34.708	34.612	34.901	-0.00064468	180	97	1.5121819	0.056729794	1.5106624	307.1033		11.521057	-0.001023	-0.00010953	0.00012673	NaN	58.599	343	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62094	+		19858	11394	11394	11740							0.13592978522194699
PIAQPCNI	8	Unmodified	_PIAQPCNI_					0	0	0		ENST00000546040.1_1_9:18657630-18684799:+|nuORF;nc|ENSG00000178031|Q8N6G6-2|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-1|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000546040.1_1_9:18657630-18684799:+|nuORF	ENST00000546040.1_1_9:18657630-18684799:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.22328825425	2	428.223288	854.432024	1.7652	0.0007559	-6.9409	-0.0029723	-5.1757	-0.0022164	428.22037898028213	26.022	0.21724	26.011	25.962	26.18	-0.011135	1380	40	0.7876915	0.024054885	0.78617203	320.58673	0	9.790253						132	10	2	NaN	NaN	NaN	0.54545	1	5318	5318		28.667	14.625	1	16053			19859	5097	11395	11741	15781	15781					-0.00101515554456455
PIAQPCNI	8	Unmodified						0	0	0		ENST00000546040.1_1_9:18657630-18684799:+|nuORF;nc|ENSG00000178031|Q8N6G6-2|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-1|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000546040.1_1_9:18657630-18684799:+|nuORF	ENST00000546040.1_1_9:18657630-18684799:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	428.223288	854.432024	1.7864	0.00076499	-8.6089	-0.0036865	-6.8225	-0.0029215	428.21975196955657	25.998	0.096539	25.998	25.974	26.07	0	1380	46	0.7876915	0.027758658	0.7876915	320.58673		11.297668	-0.0063917	-0.00075042	0.00075972	NaN	28.667	135	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17799			19860	5097	11395	11741							-0.00101515554456455
PICLEVFK	8	Unmodified	_PICLEVFK_					0	0	0		nc|ENSG00000178809|Q86UV6-2|TRIM74;ENSG00000178809|ENST00000323819|TRIM73;ENSG00000155428|ENST00000285805|TRIM74;nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50	nc|ENSG00000178809|Q86UV6-2|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5223013898001	1	948.522301	947.515025	1.2093	0.0011471	0.49988	0.00047415	1.7092	0.0016212	948.5222027503027	30.801	0.048279	30.801	30.777	30.825	0	273	52	1.4571344	0.03023541	1.4571344	296.06717	0	6.1433716						60	3	2	NaN	NaN	NaN	0.84207	1	7028	7028		3.5732	0.41988	1	4523.9			19861	3573	11396	11742	15782	15782					0.03916801173534168
PICPDSPP	8	Unmodified	_PICPDSPP_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.1941964638	2	413.194196	824.37384	0.90243	0.00037288	-3.1123	-0.001286	-2.2099	-0.00091312	413.1929546847726	32.899	0.14477	32.897	32.776	32.921	-0.0024757	1428	91	0.7580582	0.055550456	0.75653875	308.70374	0	22.621796						134	7	2	NaN	NaN	NaN	0.84692	1	4963	4963		1.4396	0	1	11390			19862	5997	11397	11743	15783	15783					-0.0453719719973833
PIDFETSL	8	Unmodified	_PIDFETSL_					0	0	0		PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant;PSD3|p.H1010Lfs*13|1|0.07|ENSG00000156011|chr8:18535863-18535864|-/TGGTCATGGAGCAAAATAGG|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3	PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.23183318035007	2	461.231833	920.449113	0.53502	0.00024677	2.9502	0.0013607	3.4852	0.0016075	461.2342937367515	35.046	0.16891	35.046	34.974	35.143	-4.5776E-05	1422	67	0.7617651	0.040767908	0.7602457	309.6832	0	16.573547						334	8	5	NaN	NaN	NaN	0.8439	1	6290	6290		3.1533	0	1	30079			19863	3900	11398	11744	15784	15784					-0.01429316467647368
PIDPNTTII	9	Unmodified	_PIDPNTTII_					0	0	0			REV__nc|ENSG00000162039|Q8N635|MEIOB	REV__nc|ENSG00000162039|Q8N635|MEIOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.27403234605	2	492.274032	982.533512	2.3257	0.0011449	-6.5403	-0.0032196	-4.2146	-0.0020748	492.27075241045327	18.508	0.095936	18.508	18.484	18.58	0	1332	73	0.8172735	0.044315398	0.8172735	331.94037	0	17.998962						130	5	2	NaN	NaN	NaN	0.42817	1	7970	7970		12.57	2.2096	1	9795.5	+		19864	10224	11399	11745	15785	15785					0.041546343490949766
PIHADPRL	8	Unmodified	_PIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.76142649729996	2	459.761426	917.5083	1.5758	0.00072448	-2.2125	-0.0010172	-0.63678	-0.00029277	459.7602369155193	17.717	0.16778	17.717	17.669	17.837	0	1491	79	0.7190863	0.048279703	0.7190863	292.34662	0	19.628265						307	8	4	NaN	NaN	NaN	0.26796	1	6373	6373		44.638	2.854	1	84851			19865	4782	11400	11746	15786	15786					0.046246243371683704
PIHADPRL	8	Unmodified	_PIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.76142649729996	2	459.761426	917.5083	1.4142	0.00065021	-0.27576	-0.00012678	1.1385	0.00052343	459.7609391357849	17.81	0.095865	17.796	17.748	17.844	-0.013784	1299	61	0.8375814	0.036913514	0.83606195	340.52112	0	15.007294						117	5	2	NaN	NaN	NaN	0.55996	1	6243	6243		27.789	5.9538	1	14514			19866	4782	11400	11746	15787	15787					0.046246243371683704
PIHADPRL	8	Unmodified	_PIHADPRL_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	459.76142649729996	2	459.761426	917.5083	1.5214	0.00069949	-0.18763	-8.6265E-05	1.3338	0.00061322	459.76114927645614	17.81	0.16784	17.796	17.724	17.892	-0.013784	1491	85	0.7190863	0.05199915	0.71756685	292.3466	0	21.140411						398	8	4	NaN	NaN	NaN	0.47456	1	6244	6244		32.453	2.8544	1	87615			19867	4782	11400	11746	15788	15788					0.046246243371683704
PIHADPRL	8	Unmodified						0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	459.761426	917.5083	1.3796	0.00063429	0.58272	0.00026791	1.9623	0.0009022	459.7619190239935	17.717	0.07189	17.717	17.693	17.765	0	1299	55	0.8375814	0.03322214	0.8375814	340.52112		13.506561	-0.039484	0.00030562	0.00075972	NaN	27.789	122	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14263			19868	4782	11400	11746							0.046246243371683704
PIKEEPAL	8	Unmodified	_PIKEEPAL_					0	0	0			REV__ENST00000560809.5_1_15:52521487-52536666:-|nuORF	REV__ENST00000560809.5_1_15:52521487-52536666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5087598156	1	896.50876	895.501483	2.4139	0.0021641	0.66608	0.00059715	3.0799	0.0027612	896.510300526844	25.588	0.072378	25.576	25.552	25.624	-0.0116	387	40	1.389409	0.023212433	1.3878895	282.54126	0	4.7203064						66	4	2	NaN	NaN	NaN	0.7718	1	5882	5882		13.003	2.3979	1	4317.2	+		19869	12783	11401	11747	15789	15789					0.04955266665945146
PILDASTLL	9	Unmodified	_PILDASTLL_					0	0	0		nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000152601|Q9NR56-7|MBNL1	nc|ENSG00000152601|Q9NR56-7|MBNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303001	1	942.550625	941.543348	1.4841	0.0013989	-0.59317	-0.0005591	0.89096	0.00083978	942.5502226485826	29.087	0.096539	29.079	29.055	29.151	-0.0077229	312	52	1.433996	0.030277252	1.4324765	291.3923	0	6.1524353						103	5	2	NaN	NaN	NaN	0.17818	1	6716	6716		26.732	0.61661	1	11014			19870	7962	11402	11748	15790	15790					0.070238223544834
PILDMLAAL	9	Unmodified	_PILDMLAAL_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5485161403	1	956.548516	955.54124	1.494	0.0014291	-0.42621	-0.00040769	1.0678	0.0010214	956.54882441741	34.612	0.096439	34.612	34.587	34.684	-0.00064468	213	49	1.4926696	0.028398037	1.4911501	303.2509	0	5.769348						104	5	2	NaN	NaN	NaN	0.29681	1	7097	7097		19.118	1.3193	1	10329			19871	1396	11403	11749	15791	15791					0.06169070345004002
PILSAQGF	8	Unmodified	_PILSAQGF_					0	0	0			REV__DLGAP4|p.A482Pfs*73|1|0.26|ENSG00000080845|chr20:36446732-36446732|G/-|frameshift_variant	REV__DLGAP4|p.A482Pfs*73|1|0.26|ENSG00000080845|chr20:36446732-36446732|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4563303146001	1	832.45633	831.449054	1.6779	0.0013968	0.13064	0.00010875	1.8086	0.0015055	832.4571080769397	24.816	0.072399	24.816	24.791	24.864	0	489	55	1.3285799	0.032265425	1.3285799	270.4862	0	6.568939						91	4	2	NaN	NaN	NaN	0.82332	1	5155	5155		6.0903	0	1	8316.6	+		19872	8316	11404	11750	15792	15792					0.02658728323001469
PIMASVFY	8	Unmodified	_PIMASVFY_					0	0	0		tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.23586431325003	2	464.235864	926.457176	1.512	0.00070192	-1.5729	-0.00073021	-0.060921	-2.8282E-05	464.2352604008349	26.167	0.2896	26.167	25.998	26.288	0	1323	46	0.8228144	0.027704597	0.8228144	334.4699	0	11.26178						229	13	3	NaN	NaN	NaN	0.35933	1	6516	6516		38.608	16.482	1	25532			19873	13768	11405	11751	15793	15793					-0.008994607518843623
PIMASVFY	8	Unmodified	_PIMASVFY_					0	0	0		tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.23586431325003	2	464.235864	926.457176	1.1566	0.00053692	-2.5281	-0.0011736	-1.3716	-0.00063673	464.23468579081936	26.167	0.24133	26.156	26.035	26.276	-0.011135	1323	43	0.8228144	0.025853395	0.82129496	334.4699	0	10.509308						201	11	3	NaN	NaN	NaN	0.54545	1	6388	6388		28.667	4.8161	1	20111			19874	13768	11405	11751	15794	15794					-0.008994607518843623
PIMASVFY	8	Unmodified	_PIMASVFY_					0	0	0		tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	tr|U7SLR9|U7SLR9_FUSNUEndolyticmureintransglycosylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mltGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.4644521599001	1	927.464452	926.457176	1.4756	0.0013685	-1.1052	-0.001025	0.37043	0.00034356	927.4655190788968	26.167	0.24133	26.156	26.035	26.276	-0.011135	264	121	1.4624695	0.07119894	1.46095	297.24796	0	14.471252						424	11	3	NaN	NaN	NaN	0.40747	1	6389	6389		36.036	9.9214	1	36485			19875	13768	11405	11751	15795	15795					-0.008994607518843623
PIMEKFNTSSL	11	Unmodified	_PIMEKFNTSSL_					0	0	0		ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8235634048501	2	633.823563	1265.63257	1.1486	0.000728	-1.6376	-0.001038	-0.48906	-0.00030998	633.8230951774638	20.791	0.19269	20.776	20.728	20.921	-0.014086	1128	58	0.9424274	0.034850597	0.94090796	381.588	0	14.110992						127	9	2	NaN	NaN	NaN	0.76937	1	17324	17324		2.1026	0	1	10589			19876	6911	11406	11752	15796	15796					0.010382892516872744
PIMSQGAA	8	Unmodified	_PIMSQGAA_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	774.381450812	1	774.381451	773.374174	1.3218	0.0010236	5.6985	0.0044128	7.0204	0.0054364	774.3859508374537	32.152	0.096512	32.152	32.128	32.225	0	561	94	1.2855089	0.055737615	1.2855089	262.03662	0	11.361481						231	5	2	NaN	NaN	NaN	0.84207	1	4403	4403		3.5732	0.41988	1	21773			19877	53	11407	11753	15797	15797					-0.021577774798856808
PIPACPLPQLP	11	Unmodified	_PIPACPLPQLP_					0	0	0		ENST00000243077.7_1_12:57606539-57606731:+|nuORF	ENST00000243077.7_1_12:57606539-57606731:+|nuORF	ENST00000243077.7_1_12:57606539-57606731:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.55109368809997	3	382.551094	1144.63145	1.815	0.00069435	7.8599	0.0030068	9.6749	0.0037011	382.55410444790647	24.381	0.072412	24.368	24.344	24.417	-0.012749	1431	31	0.75620437	0.018540919	0.7546849	459.7985	0	11.273529						60	4	2	NaN	NaN	NaN	0.75921	1	14139	14139		2.4611	0	1	4765.6			19878	6263	11408	11754	15798	15798					0.06492119673430352
PIPQQGPI	8	Unmodified	_PIPQQGPI_					0	0	0			REV__nc|ENSG00000290691|A6NGW2|STRCP1	REV__nc|ENSG00000290691|A6NGW2|STRCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.2450779413501	2	425.245078	848.475603	0.77542	0.00032974	-0.40528	-0.00017234	0.37014	0.0001574	425.2447175335607	27.615	0.096521	27.605	27.557	27.653	-0.009552	1296	70	0.8394264	0.042416096	0.83790696	341.68042	0	17.265076						158	5	2	NaN	NaN	NaN	0.84876	1	5233	5233		0.39566	0	1	14756	+		19879	13258	11409	11755	15799	15799					0.045304172143460164
PIPRRVRQAR	10	Unmodified	_PIPRRVRQAR_					0	0	0			REV__nc|ENSG00000204227|Q06587-2|RING1	REV__nc|ENSG00000204227|Q06587-2|RING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1248.7759821651	1	1248.77598	1247.76871	1.8003	0.0022482	-3.3224	-0.0041489	-1.522	-0.0019007	1248.7724300453797	39.742	0.12062	39.742	39.742	39.863	0	528	34	1.3052634	0.019744158	1.3052634	264.29315	0	3.9978333						74	6	2	NaN	NaN	NaN	0.78146	1	17730	17730		0.16111	0	1	4973.5	+		19880	11229	11410	11756	15800	15800					0.15473209387869247
PIQKLFVDKI	10	Unmodified	_PIQKLFVDKI_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF;ENST00000486002.1_1_21:27097498-27107174:-|nuORF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.9165414301666	3	400.916541	1199.72779	0.99637	0.00039946	-5.5905	-0.0022413	-4.5941	-0.0018419	400.9143757756127	41.761	0.04818	41.77	41.746	41.794	0.0089951	1434	43	0.75435036	0.025960147	0.7528309	458.42087	0	15.7760315						68	3	2	NaN	NaN	NaN	0.77984	1	15827	15827		0.55697	0	1	5525.1			19881	3853	11411	11757	15801	15801					0.1359201050502179
PIQKLFVDKI	10	Unmodified						0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF;ENST00000486002.1_1_21:27097498-27107174:-|nuORF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	400.916541	1199.72779	0.63333	0.00025391	-8.1285	-0.0032589	-7.4952	-0.0030049	400.9134110840711	41.69	0.0481	41.69	41.642	41.69	0	1434	43	0.75435036	0.025960147	0.75435036	458.4209		15.7760315	-0.039826	-0.0015733	0.00075972	NaN	0.55697	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6430.6			19882	3853	11411	11757							0.1359201050502179
PIQNTLPLV	9	Unmodified	_PIQNTLPLV_					0	0	0		chr10:101702295-101729717|233|22.11|0.0|21.08|-|0|LINC03046,LINC03046|1	chr10:101702295-101729717|233|22.11|0.0|21.08|-|0|LINC03046,LINC03046|1	chr10:101702295-101729717|233|22.11|0.0|21.08|-|0|LINC03046,LINC03046|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.80021730680005	2	497.800217	993.585882	0.84968	0.00042297	-0.46441	-0.00023118	0.38527	0.00019179	497.79995474188746	21.152	0.09626	21.138	21.065	21.162	-0.014004	1323	43	0.8228144	0.025853395	0.82129496	334.1395	0	10.498932						113	5	3	NaN	NaN	NaN	0.2345	1	8190	8190		23.118	1.2826	1	20544			19883	115	11412	11758	15802	15802					0.08883217482718919
PIREMLFKRRG	11	Unmodified	_PIREMLFKRRG_					0	0	0			REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.9086304382499	2	701.90863	1401.80271	1.6057	0.0011271	4.3578	0.0030587	5.9635	0.0041858	701.9111932013702	17.909	0.071939	17.909	17.885	17.957	0	975	34	1.0356921	0.02006185	1.0356921	418.9108	0	8.114471						53	4	2	NaN	NaN	NaN	0.77883	1	20082	20082		0.44583	0.060735	1	5633.2	+		19884	11793	11413	11759	15803	15803					0.11787869764589232
PIRPQAQTRAC	11	Unmodified	_PIRPQAQTRAC_					0	0	0			REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.22415112566665	3	414.224151	1239.65062	1.5637	0.00064772	-2.291	-0.00094897	-0.72724	-0.00030124	414.2226271243949	21.488	0.07235	21.488	21.464	21.537	0	1437	28	0.7524962	0.016687691	0.7524962	457.12683	0	10.137482						50	4	2	NaN	NaN	NaN	0.67772	1	17526	17526		4.2106	0	1	3876.1	+		19885	12623	11414	11760	15804	15804					0.040384690170412796
PIRPRPPRP	9	Unmodified	_PIRPRPPRP_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	362.5612034702667	3	362.561203	1084.66178	2.1645	0.00078476	-0.40216	-0.00014581	1.7623	0.00063895	362.56084287667807	20.068	0.096273	20.054	20.006	20.102	-0.014141	1419	28	0.76361835	0.016676903	0.7620989	464.61136	0	10.146759						53	5	2	NaN	NaN	NaN	0.67515	1	11873	11873		1.3312	0	1	4897.6			19886	4219	11415	11761	15805	15805					0.12283659173499473
PIRVHTIVI	9	Unmodified	_PIRVHTIVI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.33730130485	2	524.337301	1046.66005	1.3834	0.00072539	-1.4237	-0.00074651	-0.040277	-2.1119E-05	524.3367885950526	19.876	0.1444	19.861	19.813	19.958	-0.014141	1212	37	0.8910048	0.0220716	0.88948536	361.58047	0	8.956909						167	7	3	NaN	NaN	NaN	0.3106	1	10297	10297		15.463	4.2923	1	17004			19887	4641	11416	11762	15806	15806					0.1385860536488508
PISGMSRPFV	10	Unmodified	_PISGMSRPFV_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5713768474	1	1090.57138	1089.5641	2.1747	0.0023717	-9.883	-0.010778	-7.7083	-0.0084065	1090.5602847858943	50.583	0.19163	50.583	50.511	50.702	0	72	94	1.5758814	0.05479133	1.5758814	319.596	0	11.111938						278	9	3	NaN	NaN	NaN	0.64158	1	12376	12376		12.049	0.30984	1	19388			19888	650	11417	11763	15807	15807					0.022900894624854118
PISHQLQLLAI	11	Unmodified	_PISHQLQLLAI_					0	0	0			REV__C1RL|p.E344Q|1|0.32|ENSG00000139178|chr12:7096825-7096825|C/G|missense_variant	REV__C1RL|p.E344Q|1|0.32|ENSG00000139178|chr12:7096825-7096825|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8717052282002	2	616.871705	1231.72886	0.68107	0.00042013	-5.7525	-0.0035486	-5.0714	-0.0031284	616.8670263163609	42.962	0.096035	42.962	42.914	43.01	0	1239	46	0.87444305	0.027620852	0.87444305	354.16638	0	11.186951						117	5	3	NaN	NaN	NaN	0.77278	1	17325	17325		1.5054	0.57954	1	7038.5	+		19889	8171	11418	11764	15808	15808					0.12226224873961655
PITETEAYQLL	11	Unmodified	_PITETEAYQLL_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.3348181954	2	639.334818	1276.65508	2.2846	0.0014606	-3.4285	-0.002192	-1.1439	-0.00073134	639.3323163601391	26.167	0.096525	26.156	26.107	26.204	-0.011135	1116	58	0.94976085	0.034835637	0.9482414	384.52148	0	14.103607						153	5	3	NaN	NaN	NaN	0.33431	1	17539	17539		24.4	1.3144	1	17513			19890	1025	11419	11765	15809	15809					0.02782211920930422
PITGSEIVAI	10	Unmodified	_PITGSEIVAI_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|34|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.28968241025	2	500.289682	998.564812	2.1112	0.0010562	-1.6786	-0.00083978	0.4326	0.00021643	500.2887260070751	19.42	0.19198	19.42	19.372	19.564	0	1272	112	0.854179	0.06827152	0.854179	346.85284	0	27.722748						594	9	5	NaN	NaN	NaN	0.0057295	1	8533	8533		76.739	15.541	1	282210			19891	8068	11420	11766	15810	15810					0.06547207383187015
PITGSEIVAI	10	Unmodified	_PITGSEIVAI_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|34|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.28968241025	2	500.289682	998.564812	1.7098	0.00085538	-1.1482	-0.00057442	0.5616	0.00028096	500.2890180806156	19.442	0.1925	19.428	19.38	19.573	-0.014141	1272	103	0.854179	0.06272584	0.8526596	346.8528	0	25.470825						561	9	5	NaN	NaN	NaN	0.013201	1	8351	8351		67.154	5.9556	1	266440			19892	8068	11420	11766	15811	15811					0.06547207383187015
PITVLSAAPWL	11	Unmodified	_PITVLSAAPWL_					0	0	0		ENST00000433117.6_1_22:39910519-39910582:+|nuORF	ENST00000433117.6_1_22:39910519-39910582:+|nuORF	ENST00000433117.6_1_22:39910519-39910582:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3422492970001	2	584.342249	1166.66995	2.0495	0.0011976	-10.854	-0.0063426	-8.8048	-0.005145	584.3368406105584	28.098	0.19303	28.098	27.953	28.146	0	1179	43	0.9112251	0.02571404	0.9112251	369.29184	0	10.421143						138	9	2	NaN	NaN	NaN	0.73455	1	15379	15379		5.1889	0	1	9804.3			19893	6980	11421	11767	15812	15812					0.09327748579607942
PIVGAKHA	8	Unmodified	_PIVGAKHA_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	792.4726490808	1	792.472649	791.465373	1.9294	0.001529	-9.3624	-0.0074195	-7.4331	-0.0058905	792.4661729127541	36.639	0.048183	36.639	36.615	36.663	0	426	31	1.3661768	0.017881393	1.3661768	278.36896	0	3.6434631						48	3	2	NaN	NaN	NaN	0.84692	1	4639	4639		1.4396	0	1	2587.5			19894	5292	11422	11768	15813	15813					0.061298542797430855
PIWKNFSFA	9	Unmodified	_PIWKNFSFA_					0	0	0		ENST00000500337.6_1_5:43446333-43446519:-|nuORF	ENST00000500337.6_1_5:43446333-43446519:-|nuORF	ENST00000500337.6_1_5:43446333-43446519:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2925594502001	2	555.292559	1108.57057	0.63467	0.00035243	5.2485	0.0029144	5.8831	0.0032669	555.2950874486506	33.647	0.12062	33.645	33.621	33.742	-0.0018463	1221	55	0.885486	0.033114612	0.88396657	359.08017	0	13.428558						151	6	3	NaN	NaN	NaN	0.62619	1	12856	12856		4.4131	0.10294	1	12796			19895	7307	11423	11769	15814	15814					0.020623506855145024
PIYFSLAKDM	10	Unmodified	_PIYFSLAKDM_					0	0	0			REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8046423702	2	592.804642	1183.59473	1.2552	0.0007441	0.84193	0.0004991	2.0971	0.0012432	592.805828091372	30.463	0.07238	30.463	30.463	30.535	0	1164	55	0.9204082	0.03305024	0.9204082	372.95108	0	13.392029						95	4	2	NaN	NaN	NaN	0.68669	1	15964	15964		8.962	1.8316	1	43987	+		19896	8468	11424	11770	15815	15815					0.0102782305684741
PIYFSLAKDM	10	Unmodified						0	0	0			REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.804642	1183.59473	1.2552	0.0007441	0.84193	0.0004991	2.0971	0.0012432	592.805828091372	30.463	0.07238	30.463	30.463	30.535	0	1164	55	0.9204082	0.03305024	0.9204082	372.95108		13.392029	0.039918	-0.0025483	0.002596	NaN	8.962	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43987	+		19897	8468	11424	11770							0.0102782305684741
PIYFSLAKDM	10	Unmodified						0	0	0			REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.804642	1183.59473	0.61822	0.00036648	4.9725	0.0029477	5.5907	0.0033142	592.8074199522297	30.39	0.07238	30.383	30.311	30.383	-0.0064106	1170	52	0.91673553	0.031222522	0.9152161	371.46292		12.651428	-0.039918	0.002349	-0.002596	NaN	8.962	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17046	+		19898	8468	11424	11770							0.0102782305684741
PIYLNLRHPSD	11	Unmodified	_PIYLNLRHPSD_					0	0	0		ENST00000402538.7_1_2:33672919-33740095:+|nuORF	ENST00000402538.7_1_2:33672919-33740095:+|nuORF	ENST00000402538.7_1_2:33672919-33740095:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8540437913001	2	662.854044	1323.69353	1.4727	0.0009762	-7.8467	-0.0052012	-6.374	-0.004225	662.8488715411145	27.759	0.21714	27.75	27.557	27.774	-0.009552	1098	55	0.960755	0.032964826	0.9592356	388.82465	0	13.341095						225	10	2	NaN	NaN	NaN	0.64343	1	18301	18301		11.17	2.9255	1	28374			19899	6835	11425	11771	15816	15816					0.044635623461317664
PIYSLHDRD	9	Unmodified	_PIYSLHDRD_					0	0	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2776376675001	2	558.277638	1114.54072	1.9998	0.0011165	-5.4257	-0.003029	-3.4259	-0.0019126	558.2743228241123	25.732	0.19301	25.732	25.684	25.877	0	1221	67	0.885486	0.040477753	0.885486	359.0566	0	16.41336						229	9	2	NaN	NaN	NaN	0.2345	1	13456	13456		23.118	1.3465	1	52420	+		19900	10735	11426	11772	15817	15817					-0.011966330504719735
PIYSLHDRD	9	Unmodified						0	0	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.277638	1114.54072	1.9998	0.0011165	-5.4257	-0.003029	-3.4259	-0.0019126	558.2743228241123	25.732	0.19301	25.732	25.684	25.877	0	1221	67	0.885486	0.040477753	0.885486	359.0566		16.41336	0.0059336	-0.00022579	-0.00016018	NaN	23.118	229	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52420	+		19901	10735	11426	11772							-0.011966330504719735
PKAGAAAA	8	Unmodified	_PKAGAAAA_					0	0	0			REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.3726006851999	1	656.372601	655.365324	1.3939	0.0009149	-4.3935	-0.0028838	-2.9997	-0.0019689	656.3687401179269	55.076	0.048103	55.076	55.052	55.1	0	591	73	1.26753	0.043154	1.26753	259.1815	0	8.824005						71	3	2	NaN	NaN	NaN	0.84945	1	2181	2181		0	0	1	6519.1	+		19902	11952	11427	11773	15818	15818					0.023856169459349985
PKAGAAAA	8	Unmodified	_PKAGAAAA_					0	0	0			REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.3726006851999	1	656.372601	655.365324	-0.55401	-0.00036364	-0.53292	-0.00034979	-1.0869	-0.00071343	656.3717781779194	55.074	0.096046	55.073	55.049	55.145	-0.00061798	588	88	1.2693287	0.052180648	1.2678093	259.5493	0	10.669754						121	5	2	NaN	NaN	NaN	0.84945	1	2094	2094		0	0	1	8707.3	+		19903	11952	11427	11773	15819	15819					0.023856169459349985
PKAGAAAA	8	Unmodified						0	0	0			REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	656.372601	655.365324	1.3939	0.0009149	-4.3935	-0.0028838	-2.9997	-0.0019689	656.3687401179269	55.076	0.048103	55.076	55.052	55.1	0	591	73	1.26753	0.043154	1.26753	259.1815		8.824005	0.0012209	-0.0013009	-0.00013966	NaN	0	71	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6519.1	+		19904	11952	11427	11773							0.023856169459349985
PKAGAAAA	8	Unmodified						0	0	0			REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	656.372601	655.365324	-0.55401	-0.00036364	-0.53292	-0.00034979	-1.0869	-0.00071343	656.3717781779194	55.074	0.096046	55.073	55.049	55.145	-0.00061798	588	88	1.2693287	0.052180648	1.2678093	259.5493		10.669754	-0.0012209	0.0012332	0.00013966	NaN	0	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8707.3	+		19905	11952	11427	11773							0.023856169459349985
PKALSGHG	8	Unmodified	_PKALSGHG_					0	0	0		ENST00000329236.8_1_X:47006813-47006891:+|nuORF	ENST00000329236.8_1_X:47006813-47006891:+|nuORF	ENST00000329236.8_1_X:47006813-47006891:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.4206135103001	1	766.420614	765.413337	1.1735	0.00089941	-9.7173	-0.0074475	-8.5438	-0.0065481	766.4128298209009	32.658	0.16893	32.655	32.631	32.8	-0.0031052	552	64	1.2908988	0.03772545	1.2893794	263.18307	0	7.691284						189	8	3	NaN	NaN	NaN	0.77489	1	4218	4218		12.588	7.122	1	20695			19906	6500	11428	11774	15820	15820					0.021246908659918518
PKDIQVLWF	9	Unmodified	_PKDIQVLWF_					0	0	0		ENST00000373970.3_1_10:54076585-54076795:+|nuORF	ENST00000373970.3_1_10:54076585-54076795:+|nuORF	ENST00000373970.3_1_10:54076585-54076795:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.54997008196665	3	382.54997	1144.62808	1.5464	0.00059157	-2.3088	-0.00088324	-0.76242	-0.00029166	382.5488633427807	20.477	0.024073	20.477	20.477	20.501	0	1482	25	0.72465914	0.014858484	0.72465914	440.61795	0	9.034485						31	2	2	NaN	NaN	NaN	0.66196	1	14617	14617		1.1768	0.36547	1	2193.1			19907	6684	11429	11775	15821	15821					0.06155192891083061
PKEADIVI	8	Unmodified	_PKEADIVI_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.5087598156	1	884.50876	883.501483	1.9296	0.0017067	0.99305	0.00087837	2.9226	0.0025851	884.5094679640376	29.811	0.14483	29.811	29.763	29.908	0	369	85	1.4001206	0.04999852	1.4001206	284.778	0	10.169464						182	7	2	NaN	NaN	NaN	0.5868	1	5848	5848		26.115	1.1539	1	29361			19908	321	11430	11776	15822	15822					0.055072666659384595
PKEEEWFK	8	Unmodified	_PKEEEWFK_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;ENST00000467066.1_1_1:38351308-38353961:-|nuORF	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5360371985998	1	1092.53604	1091.52876	1.3486	0.0014734	2.4529	0.0026799	3.8015	0.0041533	1092.5389355672787	29.304	0.096533	29.296	29.296	29.393	-0.0077229	90	64	1.5652816	0.037124634	1.5637622	317.43915	0	7.5288696						91	5	2	NaN	NaN	NaN	0.81756	1	12148	12148		6.8632	0.613	1	6460.3			19909	5861	11431	11777	15823	15823					-0.013342497936719155
PKEEQGRTILL	11	Unmodified	_PKEEQGRTILL_					0	0	0		ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3695266800001	2	642.369527	1282.7245	2.225	0.0014293	-10.433	-0.006702	-8.2083	-0.0052727	642.3643840899125	39.694	1.1304	39.694	39.646	40.777	0	1221	124	0.885486	0.075431764	0.885486	358.48096	0	30.537842						6407	48	7	NaN	NaN	NaN	0.71564	1	18480	18480		6.4299	1.2411	1	11069000			19910	3338	11432	11778	15824	15824					0.09444715660379188
PKFEVIEKPQA	11	Unmodified	_PKFEVIEKPQA_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.2432057099667	3	429.243206	1284.70779	1.5471	0.0006641	-4.2084	-0.0018064	-2.6612	-0.0011423	429.2419194000036	17.165	0.071981	17.165	17.141	17.213	0	1353	46	0.8043377	0.027734637	0.8043377	488.43103	0	16.841736						73	4	2	NaN	NaN	NaN	0.72924	1	18519	18519		5.5374	0.9941	1	7362.1			19911	3853	11433	11779	15825	15825					0.07682214774422391
PKFEVIEKPQA	11	Unmodified						0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	429.243206	1284.70779	1.7247	0.00074031	-2.8789	-0.0012357	-1.1542	-0.00049541	429.24202230678935	17.258	0.095932	17.244	17.196	17.292	-0.013567	1359	34	0.8006399	0.020336509	0.7991205	486.1856		12.349274	0.039476	0.00098507	-0.0026086	NaN	5.5374	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5392.7			19912	3853	11433	11779							0.07682214774422391
PKFPIWIVGS	10	Unmodified	_PKFPIWIVGS_					0	0	0		ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.89021522933336	3	381.890215	1142.64882	2.0481	0.00078214	-10.861	-0.0041478	-8.8132	-0.0033657	382.22160308874305	18.554	0.11996	18.54	18.444	18.564	-0.01395	1464	37	0.73579943	0.022273242	0.73428	447.40088	0	13.543182						85	6	2	NaN	NaN	NaN	0.68669	1	14081	14081		4.6175	0	1	10817			19913	3639	11434	11780	15826	15826					0.08319783270758307
PKFTSQQQHR	10	Unmodified	_PKFTSQQQHR_					0	0	0			REV__ENST00000475908.5_1_5:56205193-56212726:+|nuORF	REV__ENST00000475908.5_1_5:56205193-56212726:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.5546657269	3	419.554666	1255.64217	2.0297	0.00085156	0.1114	4.6738E-05	2.1411	0.0008983	419.5550797193807	17.405	0.28763	17.405	17.285	17.573	0	1434	58	0.75435036	0.035237312	0.75435036	458.18903	0	21.402985						422	13	4	NaN	NaN	NaN	0.74854	1	17908	17908		2.239	0.38875	1	126050	+		19914	10112	11435	11781	15827	15827					0.024572383720851576
PKGGGPGK	8	Unmodified	_PKGGGPGK_					0	0	0		ENST00000410036.2_1_2:132241636-132250313:-|nuORF;ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B	ENST00000410036.2_1_2:132241636-132250313:-|nuORF	ENST00000410036.2_1_2:132241636-132250313:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3991497867	1	697.39915	696.391873	0.50843	0.00035458	-3.2161	-0.0022429	-2.7076	-0.0018883	697.3967569721768	35.722	0.19282	35.722	35.674	35.867	0.00052643	696	70	1.2044523	0.04154432	1.2029328	245.98682	0	8.484634						272	9	3	NaN	NaN	NaN	0.84945	1	3101	3101		0	0	1	56403			19915	3763	11436	11782	15828	15828					0.0315330583728155
PKGGPAAL	8	Unmodified	_PKGGPAAL_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.4195508777999	1	710.419551	709.412274	1.8947	0.001346	-5.2948	-0.0037615	-3.4001	-0.0024155	710.4154453967305	27.711	0.024137	27.702	27.702	27.726	-0.009552	678	31	1.2152823	0.018042445	1.213763	248.11082	0	3.6835327						36	2	2	NaN	NaN	NaN	0.84887	1	3354	3354		0.32989	0	1	2359.2			19916	5103	11437	11783	15829	15829					0.04594476497072719
PKGNGPSP	8	Unmodified	_PKGNGPSP_					0	0	0		ENST00000441971.5_1_7:90225128-90225194:-|nuORF	ENST00000441971.5_1_7:90225128-90225194:-|nuORF	ENST00000441971.5_1_7:90225128-90225194:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.3889790309	1	753.388979	752.381703	1.4262	0.0010745	-4.884	-0.0036796	-3.4579	-0.0026051	753.3863830693753	22.187	0.072395	22.173	22.149	22.222	-0.013731	540	55	1.2980826	0.032324076	1.2965631	264.72836	0	6.5920715						101	4	3	NaN	NaN	NaN	0.8439	1	4026	4026		3.1533	0.69183	1	10272			19917	7009	11438	11784	15830	15830					-0.004393018879568444
PKGPVPIG	8	Unmodified	_PKGPVPIG_					0	0	0			REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.4665010704	1	764.466501	763.459225	2.5328	0.0019362	-4.572	-0.0034952	-2.0393	-0.001559	764.4628046374356	37.552	0.04818	37.555	37.555	37.603	0.0028229	576	34	1.2765218	0.019777894	1.2750024	260.26367	0	4.032379						40	3	2	NaN	NaN	NaN	0.84887	1	4193	4193		0.32989	0	1	2145.5	+		19918	10104	11439	11785	15831	15831					0.06803336048221809
PKGSASLK	8	Unmodified	_PKGSASLK_					0	0	0			REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.4672293519	1	787.467229	786.459953	-0.053849	-4.2405E-05	-3.2093	-0.0025272	-3.2631	-0.0025696	787.4638798850148	58.41	0.072052	58.41	58.362	58.434	-0.00048447	495	49	1.3249949	0.028683543	1.3234755	270.0071	0	5.845093						99	4	2	NaN	NaN	NaN	0.84782	1	4496	4496		0.92586	0	1	8501.5	+		19919	12214	11440	11786	15832	15832					0.05818130697264223
PKGSASLK	8	Unmodified						0	0	0			REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	787.467229	786.459953	-0.053849	-4.2405E-05	-3.2093	-0.0025272	-3.2631	-0.0025696	787.4638798850148	58.41	0.072052	58.41	58.362	58.434	-0.00048447	495	49	1.3249949	0.028683543	1.3234755	270.0071		5.845093	-0.0014639	0.00067623	-0.00075972	NaN	0.92586	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8501.5	+		19920	12214	11440	11786							0.05818130697264223
PKGSKAGG	8	Unmodified	_PKGSKAGG_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3940644088001	1	701.394064	700.386788	0.73377	0.00051466	-0.14782	-0.00010368	0.58595	0.00041098	701.393672963453	28.435	0.12067	28.426	28.378	28.499	-0.0089798	699	61	1.2026466	0.036115766	1.2011272	245.591	0	7.3751526						136	6	3	NaN	NaN	NaN	0.84887	1	3167	3167		0.32989	0	1	20571			19921	7933	11441	11787	15833	15833					0.024610019746660328
PKGVPAPA	8	Unmodified	_PKGVPAPA_					0	0	0		SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	368.72123870429994	2	368.721239	735.427924	1.6855	0.00062149	-5.8454	-0.0021553	-4.1599	-0.0015338	368.7193053994341	28.001	0.096497	28.001	27.977	28.074	0	1371	67	0.79324204	0.040688455	0.79324204	323.66977	0	16.602295						132	5	2	NaN	NaN	NaN	0.84887	1	3835	3835		0.32989	0	1	12130			19922	13673	11442	11788	15834	15834					0.04962763014123084
PKHFAWYF	8	Unmodified	_PKHFAWYF_					0	0	0			REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4	REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2741697318	2	548.27417	1094.53379	1.5722	0.00086201	-7.8253	-0.0042904	-6.2531	-0.0034284	548.2704731131645	21.464	0.096428	21.45	21.426	21.523	-0.014006	1089	76	0.96624947	0.045777023	0.96473	391.89294	0	18.566345						121	5	2	NaN	NaN	NaN	0.84876	1	12270	12270		0.39566	0	1	9601.6	+		19923	11237	11443	11789	15835	15835					-0.009699011403881741
PKHKKLLRTI	10	Unmodified	_PKHKKLLRTI_					0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1233.8153873638003	1	1233.81539	1232.80811	2.1904	0.0027025	-2.2466	-0.0027719	-0.056256	-6.9409E-05	1233.8130923575277	39.165	0.28947	39.165	39.044	39.334	0	48	346	1.5900038	0.20397198	1.5900038	321.99097	0	41.306305						1431	13	3	NaN	NaN	NaN	0.77421	1	17356	17356		1.9246	0	1	485870	+		19924	9983	11444	11790	15836	15836					0.2010191661877343
PKHKKLLRTI	10	Unmodified						0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1233.81539	1232.80811	2.1904	0.0027025	-2.2466	-0.0027719	-0.056256	-6.9409E-05	1233.8130923575277	39.165	0.28947	39.165	39.044	39.334	0	48	346	1.5900038	0.20397198	1.5900038	321.99097		41.306305	0	0	0	NaN	1.9246	1431	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485870	+		19925	9983	11444	11790							0.2010191661877343
PKIAVQFG	8	Unmodified	_PKIAVQFG_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.5036148582002	1	859.503615	858.496338	1.9473	0.0016737	2.3287	0.0020016	4.276	0.0036752	859.5049121219114	55.821	0.048023	55.821	55.821	55.869	0	405	46	1.3786905	0.026800632	1.3786905	280.5444	0	5.4535522						100	3	3	NaN	NaN	NaN	0.84692	1	5519	5519		1.4396	0	1	11270			19926	336	11445	11791	15837	15837					0.06143007594005212
PKILVDRLYT	10	Unmodified	_PKILVDRLYT_					0	0	0		ENST00000578114.1_1_18:29205579-29207019:-|nuORF;nc|ENSG00000118276|Q9UBX8-2|B4GALT6;ENSG00000118276|ENST00000306851|B4GALT6	ENST00000578114.1_1_18:29205579-29207019:-|nuORF	ENST00000578114.1_1_18:29205579-29207019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.36625570955	2	609.366256	1216.71796	1.2006	0.00073159	7.5183	0.0045814	8.7189	0.005313	609.3710247630343	39.066	0.33745	39.071	39.047	39.384	0.0046806	1179	115	0.9112251	0.06984061	0.90970564	369.11423	0	28.29068						927	15	6	NaN	NaN	NaN	0.74854	1	16237	16237		4.7291	1.5175	1	226090			19927	2171	11446	11792	15838	15838					0.1182682249964273
PKITEYHLL	9	Unmodified	_PKITEYHLL_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.3187742007001	2	557.318774	1112.623	1.1101	0.00061867	-3.386	-0.0018871	-2.2759	-0.0012684	557.3166179225724	28.387	0.096542	28.378	28.354	28.45	-0.0089779	1197	55	0.9001988	0.033100247	0.8986794	365.03018	0	13.42215						119	5	3	NaN	NaN	NaN	0.58159	1	13013	13013		6.2502	1.0613	1	15121			19928	2215	11447	11793	15839	15839					0.07118889028470221
PKKPGVGV	8	Unmodified	_PKKPGVGV_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.4930501719002	1	781.49305	780.485774	1.9401	0.0015162	-0.45385	-0.00035468	1.4863	0.0011615	781.4912355512707	56.756	0.216	56.756	56.684	56.9	0	468	79	1.3411216	0.046570897	1.3411216	273.32925	0	9.491455						353	10	3	NaN	NaN	NaN	0.84945	1	4498	4498		0	0	1	46523			19929	8057	11448	11794	15840	15840					0.08675024939577725
PKKPVGAA	8	Unmodified	_PKKPVGAA_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4774001077001	1	767.4774	766.470124	0.27875	0.00021393	-0.26027	-0.00019975	0.018474	1.4178E-05	767.4769918801446	56.827	0.048031	56.826	56.802	56.85	-0.00056458	432	61	1.3625998	0.03578186	1.3610804	277.7944	0	7.294861						67	3	2	NaN	NaN	NaN	0.84876	1	4242	4242		0.39566	0.065779	1	4358.7			19930	5524	11449	11795	15841	15841					0.07754738422511309
PKLAGPLH	8	Unmodified	_PKLAGPLH_					0	0	0		ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.5039492092002	1	832.503949	831.496673	-0.53911	-0.00044881	2.5738	0.0021427	2.0346	0.0016938	832.5050398823538	55.819	0.096058	55.818	55.77	55.866	-0.00059128	432	61	1.3625998	0.035778046	1.3610804	277.41208	0	7.284027						152	5	3	NaN	NaN	NaN	0.84876	1	5044	5044		0.39566	0	1	26974			19931	1603	11450	11796	15842	15842					0.07418427313859866
PKLPVPPL	8	Unmodified	_PKLPVPPL_					0	0	0		nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT	nc|ENSG00000070748|P28329-3|CHAT	nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.7838389611	2	430.783839	859.553125	1.2998	0.00055995	-1.8808	-0.00081022	-0.58095	-0.00025026	430.7829656539181	23.079	0.12039	23.065	23.017	23.138	-0.013294	1344	37	0.8098828	0.022176862	0.8083634	329.58743	0	9.025055						129	6	3	NaN	NaN	NaN	0.77489	1	5392	5392		12.588	2.5363	1	13401			19932	767	11451	11797	15843	15843					0.11773055150513301
PKLPVPPL	8	Unmodified	_PKLPVPPL_					0	0	0		nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT;ENSG00000070748|ENST00000337653|CHAT	nc|ENSG00000070748|P28329-3|CHAT	nc|ENSG00000070748|P28329-3|CHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.7838389611	2	430.783839	859.553125	1.2807	0.00055173	-1.7581	-0.00075738	-0.4774	-0.00020566	430.7828139071328	23.079	0.24103	23.065	22.993	23.234	-0.013294	1428	52	0.7580582	0.03151101	0.75653875	308.49704	0	12.823608						226	11	3	NaN	NaN	NaN	0.80071	1	5393	5393		9.1232	3.0329	1	40836			19933	767	11451	11797	15844	15844					0.11773055150513301
PKNGAAIA	8	Unmodified	_PKNGAAIA_					0	0	0			REV__nc|ENSG00000101220|Q9GZN8-2|ADISSP	REV__nc|ENSG00000101220|Q9GZN8-2|ADISSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.4253645372	1	741.425365	740.418088	1.5242	0.0011301	-0.46264	-0.00034301	1.0616	0.00078708	741.423744483354	52.306	0.023937	52.306	52.282	52.306	-0.00032043	600	25	1.2621325	0.014395475	1.2606131	257.4712	0	2.9366455						28	2	2	NaN	NaN	NaN	0.84727	1	3848	3848		1.2418	0	1	1398.2	+		19934	13098	11452	11798	15845	15845					0.03749575008748707
PKPAGARG	8	Unmodified	_PKPAGARG_					0	0	0			REV__nc|ENSG00000171848|P31350-2|RRM2	REV__nc|ENSG00000171848|P31350-2|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.22193719605	2	377.221937	752.429321	1.3691	0.00051647	-1.1327	-0.00042729	0.2364	8.9176E-05	377.2217693479282	12.03	0.21589	12.022	11.902	12.118	-0.0081863	1437	55	0.7524962	0.03338456	0.75097674	306.91742	0	13.616425						164	10	2	NaN	NaN	NaN	0.84692	1	4033	4033		1.4396	0	1	14326	+		19935	13170	11453	11799	15846	15846					0.04320397102901552
PKPAGPGSG	9	Unmodified	_PKPAGPGSG_					0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4046290951002	1	767.404629	766.397353	2.2048	0.001692	-1.6546	-0.0012697	0.55024	0.00042225	767.4024323673227	25.901	0.12065	25.901	25.877	25.998	0	537	37	1.2998781	0.021544695	1.2998781	265.00772	0	4.392334						69	6	2	NaN	NaN	NaN	0.66196	1	4308	4308		2.4615	0	1	4090.6	+		19936	11751	11454	11800	15847	15847					0.00480984629109571
PKPAGPGSG	9	Unmodified						0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.404629	766.397353	2.2048	0.001692	-1.6546	-0.0012697	0.55024	0.00042225	767.4024323673227	25.901	0.12065	25.901	25.877	25.998	0	537	37	1.2998781	0.021544695	1.2998781	265.00772		4.392334	0.0059001	0.0012432	0.00075972	NaN	2.4615	69	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4090.6	+		19937	11751	11454	11800							0.00480984629109571
PKPAGPGSG	9	Unmodified						0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.404629	766.397353	2.9265	0.0022458	-5.3251	-0.0040865	-2.3986	-0.0018407	767.3995728397441	25.901	0.048281	25.89	25.865	25.914	-0.0116	537	43	1.2998781	0.025140882	1.2983587	265.00775		5.125519	-0.0059001	-0.0015736	-0.00075972	NaN	2.4615	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3644.5	+		19938	11751	11454	11800							0.00480984629109571
PKPGPGGAG	9	Unmodified	_PKPGPGGAG_					0	0	0		ENST00000458502.2_1_17:20744359-20744572:+|nuORF	ENST00000458502.2_1_17:20744359-20744572:+|nuORF	ENST00000458502.2_1_17:20744359-20744572:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088001	1	737.394064	736.386788	1.343	0.00099034	-6.0084	-0.0044306	-4.6654	-0.0034402	737.3895429670695	22.091	0.1205	22.077	22.029	22.149	-0.013731	576	49	1.2765218	0.028766274	1.2750024	260.4325	0	5.868805						141	6	2	NaN	NaN	NaN	0.61413	1	3777	3777		4.9097	1.3365	1	15618			19939	7066	11455	11801	15848	15848					0.008050019746633552
PKPKKKKH	8	Unmodified	_PKPKKKKH_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.6570958078001	1	990.657096	989.649819	2.1289	0.002109	-3.7838	-0.0037485	-1.6549	-0.0016394	990.6532970923068	53.731	0.10546	53.731	53.626	53.731	0	198	46	1.5015416	0.026610494	1.5015416	304.9039	0	5.403534						100	4	2	NaN	NaN	NaN	0.84887	1	8221	8221		0.32989	0	1	10095			19940	677	11456	11802	15849	15849					0.15458042430316254
PKPKKKKH	8	Unmodified	_PKPKKKKH_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.6570958078001	1	990.657096	989.649819	0.054177	5.367E-05	0.2442	0.00024192	0.29838	0.00029559	990.6573855201525	53.672	0.064808	53.671	53.647	53.712	-0.00059128	195	49	1.5033154	0.028379917	1.501796	305.26407	0	5.762848						67	3	2	NaN	NaN	NaN	0.84887	1	8050	8050		0.32989	0	1	7289.6			19941	677	11456	11802	15850	15850					0.15458042430316254
PKPKKVKK	8	Unmodified	_PKPKKVKK_					0	0	0			REV__DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant	REV__DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.6665978616002	1	952.666598	951.659321	0.43928	0.00041848	-0.8802	-0.00083854	-0.44092	-0.00042005	952.6656030034005	45.668	0.16813	45.679	45.631	45.8	0.011349	225	43	1.4855686	0.024861455	1.4840492	301.82574	0	5.051178						98	8	2	NaN	NaN	NaN	0.84887	1	6999	6999		0.32989	0	1	5577.6	+		19942	8322	11457	11803	15851	15851					0.1815581071584802
PKTDPVRLTQL	11	Unmodified	_PKTDPVRLTQL_					0	0	0		ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF	ENSG00000149781|ENST00000345728|FERMT3	ENSG00000149781|ENST00000345728|FERMT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.25047173483335	3	423.250472	1266.72959	2.2694	0.00096051	0.06548	2.7715E-05	2.3348	0.00098822	423.2502748788547	18.746	0.071991	18.731	18.684	18.756	-0.014059	1512	28	0.7060759	0.016734898	0.70455647	428.82657	0	10.163727						45	4	2	NaN	NaN	NaN	0.76545	1	17351	17351		2.789	0.084862	1	2930.4			19943	3695	11458	11804	15852	15852					0.10689019522988019
PKTPGAAP	8	Unmodified	_PKTPGAAP_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.71087098324995	2	369.710871	737.407189	1.9921	0.0007365	0.99308	0.00036715	2.9852	0.0011036	369.71120806181887	21.705	0.12041	21.691	21.619	21.74	-0.013897	1389	34	0.7821392	0.020360768	0.78061974	319.12375	0	8.307465						82	6	2	NaN	NaN	NaN	0.81251	1	3806	3806		7.5404	3.1273	1	5404.8	+		19944	8879	11459	11805	15853	15853					0.02798172634459206
PKVKAEIK	8	Unmodified	_PKVKAEIK_					0	0	0			REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	REV__ENST00000505222.5_1_6:82901346-82950269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5876788386001	1	912.587679	911.580402	1.9739	0.0018014	2.4577	0.0022429	4.4317	0.0040443	912.5890021622388	56.924	0.04797	56.924	56.9	56.948	0	267	40	1.4606913	0.023118854	1.4606913	296.95746	0	4.700012						46	3	2	NaN	NaN	NaN	0.84756	1	6270	6270		1.072	0	1	4184.9	+		19945	8362	11460	11806	15854	15854					0.1210753869089558
PLAAAVDGLL	10	Unmodified	_PLAAAVDGLL_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.27911772395004	2	470.279118	938.543683	0.65264	0.00030692	0.73529	0.00034579	1.3879	0.00065272	470.27974862516476	21.416	0.072136	21.402	21.354	21.426	-0.014004	1344	40	0.8098828	0.024023652	0.8083634	329.1513	0	9.763672						68	4	2	NaN	NaN	NaN	0.56921	1	6656	6656		16.584	1.1215	1	5913.8	+		19946	10193	11461	11807	15855	15855					0.07195242074340058
PLAAAVDGLL	10	Unmodified						0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	470.279118	938.543683	0.65264	0.00030692	0.73529	0.00034579	1.3879	0.00065272	470.27974862516476	21.416	0.072136	21.402	21.354	21.426	-0.014004	1344	40	0.8098828	0.024023652	0.8083634	329.1513		9.763672	-0.0069505	0.00087824	-0.00075972	NaN	16.584	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5913.8	+		19947	10193	11461	11807							0.07195242074340058
PLAAILDII	9	Unmodified	_PLAAILDII_					0	0	0			REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.5920955145001	1	938.592096	937.584819	2.3014	0.0021601	-3.8276	-0.0035925	-1.5261	-0.0014324	938.5885367074003	36.107	0.072304	36.108	36.084	36.157	0.0011024	249	46	1.4713576	0.026658535	1.4698381	299.0025	0	5.4174194						66	4	2	NaN	NaN	NaN	0.42773	1	6637	6637		12.588	0	1	4225.6	+		19948	10908	11462	11808	15856	15856					0.11353003113799787
PLAAILDII	9	Unmodified						0	0	0			REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	938.592096	937.584819	1.2425	0.0011662	0.77965	0.00073177	2.0222	0.001898	938.5924739156044	36.133	0.072376	36.133	36.085	36.157	0	258	58	1.4660252	0.033763885	1.4660252	297.91888		6.861328	0.012313	0.0025682	-0.0019064	NaN	12.588	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5848.9	+		19949	10908	11462	11808							0.11353003113799787
PLAAILDII	9	Unmodified						0	0	0			REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	REV__ENST00000452398.5_1_3:19388190-19491848:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	938.592096	937.584819	2.3014	0.0021601	-3.8276	-0.0035925	-1.5261	-0.0014324	938.5885367074003	36.107	0.072304	36.108	36.084	36.157	0.0011024	249	46	1.4713576	0.026658535	1.4698381	299.0025		5.4174194	-0.012313	-0.0017561	0.0019064	NaN	12.588	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4225.6	+		19950	10908	11462	11808							0.11353003113799787
PLAAVKKK	8	Unmodified	_PLAAVKKK_					0	0	0			REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5	REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.5821995302001	1	854.5822	853.574923	-0.40326	-0.00034462	2.7887	0.0023832	2.3855	0.0020386	854.5842667302732	58.818	0.071987	58.818	58.77	58.842	-0.00045395	330	55	1.4233059	0.032076955	1.4217864	289.64935	0	6.527832						84	4	2	NaN	NaN	NaN	0.84876	1	5307	5307		0.39566	0.39566	1	7627.2	+		19951	8660	11463	11809	15857	15857					0.14227859899085615
PLAEAGAL	8	Unmodified	_PLAEAGAL_					0	0	0		ENST00000442114.6_2_6:43968341-43968485:+|nuORF;nc|ENSG00000181577|Q8N319-4|LINC03040;nc|ENSG00000181577|Q8N319|LINC03040	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4141311489001	1	741.414131	740.406855	1.0543	0.00078164	7.3219	0.0054285	8.3761	0.0062102	741.4190872037333	32.973	0.096546	32.973	32.925	33.021	0	552	40	1.2908988	0.023353815	1.2908988	263.33945	0	4.764099						68	5	2	NaN	NaN	NaN	0.84651	1	3919	3919		1.6704	0	1	4459.2			19952	7010	11464	11810	15858	15858					0.026267529146252855
PLAFVPVLS	9	Unmodified	_PLAFVPVLS_					0	0	0		ENST00000568996.1_1_1:25573505-25664619:-|nuORF;ENST00000473314.6_1_1:25664541-25664619:-|nuORF	ENST00000568996.1_1_1:25573505-25664619:-|nuORF	ENST00000568996.1_1_1:25573505-25664619:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5658807640001	1	942.565881	941.558604	1.8096	0.0017057	-2.2111	-0.0020841	-0.40156	-0.0003785	942.5631953322081	34.443	0.072361	34.443	34.419	34.491	-0.0006485	252	61	1.4695803	0.03554654	1.4680609	298.62308	0	7.2231445						86	4	2	NaN	NaN	NaN	0.65388	1	6722	6722		3.1533	0	1	5390.6			19953	7166	11465	11811	15859	15859					0.0854873394232527
PLAGPPAP	8	Unmodified	_PLAGPPAP_					0	0	0			REV__nc|ENSG00000188157|O00468-2|AGRN	REV__nc|ENSG00000188157|O00468-2|AGRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.4086518404999	1	719.408652	718.401375	1.581	0.0011374	-3.406	-0.0024503	-1.825	-0.0013129	719.4057794768066	28.001	0.31369	28.001	27.808	28.122	0	675	88	1.2170867	0.052348256	1.2170867	248.42029	0	10.68483						292	14	2	NaN	NaN	NaN	0.84651	1	3569	3569		1.6704	0	1	68810	+		19954	11048	11466	11812	15860	15860					0.030910741227899052
PLAGPPAP	8	Unmodified						0	0	0			REV__nc|ENSG00000188157|O00468-2|AGRN	REV__nc|ENSG00000188157|O00468-2|AGRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.408652	718.401375	1.581	0.0011374	-3.406	-0.0024503	-1.825	-0.0013129	719.4057794768066	28.001	0.31369	28.001	27.808	28.122	0	675	88	1.2170867	0.052348256	1.2170867	248.42029		10.68483	-0.0072032	-0.00014782	-0.00014235	NaN	1.6704	292	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68810	+		19955	11048	11466	11812							0.030910741227899052
PLAGPPAP	8	Unmodified						0	0	0			REV__nc|ENSG00000188157|O00468-2|AGRN	REV__nc|ENSG00000188157|O00468-2|AGRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.408652	718.401375	1.0557	0.00075947	-2.9919	-0.0021524	-1.9362	-0.0013929	719.4059733933321	28.025	0.26545	28.016	27.871	28.137	-0.0089779	672	94	1.2188909	0.05595255	1.2173715	248.78853		11.420502	0.0072032	0.00015013	0.00014235	NaN	1.6704	374	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73175	+		19956	11048	11466	11812							0.030910741227899052
PLAGWPAAL	9	Unmodified	_PLAGWPAAL_					0	0	0			REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B	REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.5036148582	1	895.503615	894.496338	1.8345	0.0016428	-1.9523	-0.0017483	-0.11777	-0.00010546	895.5021432970503	29.836	0.072418	29.836	29.811	29.884	0	387	49	1.389409	0.028576732	1.389409	282.54608	0	5.8112793						89	4	2	NaN	NaN	NaN	0.48931	1	5990	5990		10.052	0	1	7600	+		19957	10945	11467	11813	15861	15861					0.04487007593979797
PLAGWPAAL	9	Unmodified						0	0	0			REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B	REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	895.503615	894.496338	1.8345	0.0016428	-1.9523	-0.0017483	-0.11777	-0.00010546	895.5021432970503	29.836	0.072418	29.836	29.811	29.884	0	387	49	1.389409	0.028576732	1.389409	282.54608		5.8112793	0.0039745	-0.00060858	0.00075972	NaN	10.052	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7600	+		19958	10945	11467	11813							0.04487007593979797
PLAHMSLVLI	10	Unmodified	_PLAHMSLVLI_					0	0	0		tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3255449878001	2	547.325545	1092.63654	1.2123	0.00066352	5.8003	0.0031747	7.0126	0.0038382	547.3282845687797	27.471	0.096556	27.471	27.422	27.519	0	1221	55	0.885486	0.03311813	0.885486	359.14447	0	13.432404						115	5	3	NaN	NaN	NaN	0.62764	1	12518	12518		13.003	0.41496	1	18891			19959	13835	11468	11814	15862	15862					0.09392423536064598
PLAIGGGD	8	Unmodified	_PLAIGGGD_					0	0	0			REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3671809563001	1	699.367181	698.359904	0.61106	0.00042735	-7.6991	-0.0053845	-7.0881	-0.0049572	699.3629155887179	40.969	0.09613	40.969	40.921	41.017	0	723	40	1.1881942	0.023494124	1.1881942	242.65323	0	4.7979736						53	5	3	NaN	NaN	NaN	0.84692	1	3194	3194		1.4396	0	1	3454.5	+		19960	12416	11469	11815	15863	15863					-0.001341066365171173
PLAIGGGD	8	Unmodified						0	0	0			REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	699.367181	698.359904	0.61106	0.00042735	-7.6991	-0.0053845	-7.0881	-0.0049572	699.3629155887179	40.969	0.09613	40.969	40.921	41.017	0	723	40	1.1881942	0.023494124	1.1881942	242.65323		4.7979736	0.16564	0.0017431	0.0034712	NaN	1.4396	53	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3454.5	+		19961	12416	11469	11815							-0.001341066365171173
PLAIGGGD	8	Unmodified						0	0	0			REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	REV__ENST00000485341.5_1_11:1902432-1902576:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	699.367181	698.359904	1.3505	0.00094453	-12.711	-0.0088894	-11.36	-0.0079448	699.3592553253958	40.631	0.072044	40.637	40.565	40.637	0.0067558	732	34	1.1827712	0.019886017	1.1812518	241.54579		4.0611115	-0.16564	-0.0017618	-0.0034712	NaN	1.4396	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3143.4	+		19962	12416	11469	11815							-0.001341066365171173
PLAPARSS	8	Unmodified	_PLAPARSS_					0	0	0			REV__ENST00000414141.1_1_2:70351197-70351452:-|nuORF	REV__ENST00000414141.1_1_2:70351197-70351452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.7270523637	2	399.727052	797.439552	2.1849	0.00087337	-5.0399	-0.0020146	-2.855	-0.0011412	399.72490532309183	24.984	0.048256	24.972	24.972	25.02	-0.012392	1419	43	0.76361835	0.025940418	0.7620989	311.1397	0	10.569519						43	3	2	NaN	NaN	NaN	0.84651	1	4636	4636		1.6704	0.2308	1	2927.6	+		19963	12081	11470	11816	15864	15864					0.03272960037475059
PLAPGPGG	8	Unmodified	_PLAPGPGG_					0	0	0			REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3617016479001	1	665.361702	664.354425	1.0231	0.00068071	6.4064	0.0042626	7.4295	0.0049433	665.3660959109227	31.139	0.21717	31.139	31.091	31.308	0	675	103	1.2170867	0.06139028	1.2170867	248.79811	0	12.549469						368	10	3	NaN	NaN	NaN	0.83849	1	2441	2441		4.0537	0	1	60046	+		19964	12462	11471	11817	15865	15865					0.008822145716635532
PLAPGPGG	8	Unmodified	_PLAPGPGG_					0	0	0			REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3617016479001	1	665.361702	664.354425	1.4922	0.00099282	5.7667	0.0038369	7.2588	0.0048297	665.3655180103227	31.114	0.2896	31.109	31.06	31.35	-0.0050716	675	100	1.2170867	0.0595814	1.2155672	248.79811	0	12.179703						552	13	3	NaN	NaN	NaN	0.83849	1	2357	2357		4.0537	0	1	77331	+		19965	12462	11471	11817	15866	15866					0.008822145716635532
PLAPGPGG	8	Unmodified						0	0	0			REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	665.361702	664.354425	1.0231	0.00068071	6.4064	0.0042626	7.4295	0.0049433	665.3660959109227	31.139	0.21717	31.139	31.091	31.308	0	675	103	1.2170867	0.06139028	1.2170867	248.79811		12.549469	0.01511	0.00020264	0.00075972	NaN	4.0537	368	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60046	+		19966	12462	11471	11817							0.008822145716635532
PLAPGPGG	8	Unmodified						0	0	0			REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	REV__ENST00000491165.5_2_3:113415279-113415423:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	665.361702	664.354425	1.4922	0.00099282	5.7667	0.0038369	7.2588	0.0048297	665.3655180103227	31.114	0.2896	31.109	31.06	31.35	-0.0050716	675	100	1.2170867	0.0595814	1.2155672	248.79811		12.179703	-0.01511	-0.00022305	-0.00075972	NaN	4.0537	552	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77331	+		19967	12462	11471	11817							0.008822145716635532
PLASGPSS	8	Unmodified	_PLASGPSS_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3620955784	1	715.362096	714.354819	1.2059	0.00086264	-5.0649	-0.0036233	-3.859	-0.0027606	715.3583182842165	28.701	0.096535	28.701	28.677	28.774	0	594	73	1.265731	0.043190837	1.265731	258.3765	0	8.81665						100	5	2	NaN	NaN	NaN	0.82797	1	3507	3507		5.4659	0	1	7345.7			19968	5336	11472	11818	15867	15867					-0.01378410499137317
PLASGPSS	8	Unmodified						0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000460658.5_1_22:31484094-31491444:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.362096	714.354819	1.2534	0.0008966	-3.6131	-0.0025847	-2.3597	-0.0016881	715.3589399183297	28.725	0.072378	28.716	28.692	28.765	-0.0083504	588	61	1.2693287	0.03598082	1.2678093	259.1109		7.3448334	0.0075184	0.00057856	0.0010391	NaN	5.4659	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5868.1			19969	5336	11472	11818							-0.01378410499137317
PLDEGSYG	8	Unmodified	_PLDEGSYG_					0	0	0			REV__ENST00000468328.5_1_1:204951018-204956638:+|nuORF	REV__ENST00000468328.5_1_1:204951018-204956638:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.18488298775003	2	419.184883	836.355213	0.8957	0.00037546	-3.1566	-0.0013232	-2.2609	-0.00094774	419.18331965875143	34.106	0.45835	34.105	33.936	34.394	-0.0012474	1434	52	0.75435036	0.031514466	0.7528309	307.12186	0	12.830627						494	20	4	NaN	NaN	NaN	0.84692	1	5088	5088		1.4396	0	1	85114	+		19970	10283	11473	11819	15868	15868					-0.06951035569932174
PLDEVLIIK	9	Unmodified	_PLDEVLIIK_					0	0	0			REV__ENST00000418130.1_1_7:16905205-16905403:-|nuORF	REV__ENST00000418130.1_1_7:16905205-16905403:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3235252276	2	520.323525	1038.6325	1.2047	0.00062681	-1.9865	-0.0010336	-0.78187	-0.00040682	520.3218909443472	27.59	0.072386	27.581	27.557	27.629	-0.009552	1278	31	0.85049206	0.01843679	0.8489726	345.17456	0	7.482605						86	4	3	NaN	NaN	NaN	0.2345	1	9958	9958		23.118	1.3465	1	8826	+		19971	10063	11474	11820	15869	15869					0.11472657313993295
PLDEVLIIK	9	Unmodified						0	0	0			REV__ENST00000418130.1_1_7:16905205-16905403:-|nuORF	REV__ENST00000418130.1_1_7:16905205-16905403:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.323525	1038.6325	1.2047	0.00062681	-1.9865	-0.0010336	-0.78187	-0.00040682	520.3218909443472	27.59	0.072386	27.581	27.557	27.629	-0.009552	1278	31	0.85049206	0.01843679	0.8489726	345.17456		7.482605	0.0068858	-0.00090448	-0.0016815	NaN	23.118	86	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8826	+		19972	10063	11474	11820							0.11472657313993295
PLDTVKGLLAL	11	Unmodified	_PLDTVKGLLAL_					0	0	0		nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3553566722502	2	570.355357	1138.69616	1.2608	0.0007191	-3.0232	-0.0017243	-1.7624	-0.0010052	570.3535239213851	30.68	0.19309	30.68	30.584	30.777	0	1194	73	0.902037	0.044128895	0.902037	365.6731	0	17.889221						236	9	2	NaN	NaN	NaN	0.63477	1	14417	14417		11.739	2.7769	1	24025			19973	7948	11475	11821	15870	15870					0.1323601775111456
PLDTVKGLLAL	11	Unmodified						0	0	0		nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	nc|ENSG00000140107|Q6Q0C1-2|SLC25A47	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.355357	1138.69616	0.84122	0.0004798	0.28589	0.00016306	1.1271	0.00064285	570.355946891426	30.679	0.193	30.673	30.577	30.77	-0.0057545	1191	67	0.90387505	0.040451527	0.9023556	366.41818		16.398468	-0.0033941	0.0016073	0.00015929	NaN	11.739	222	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20198			19974	7948	11475	11821							0.1323601775111456
PLDYGLSRL	9	Unmodified	_PLDYGLSRL_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2874740723	2	517.287474	1032.5604	1.6797	0.00086889	-0.24837	-0.00012848	1.4313	0.00074042	517.2869525010121	23.223	0.072397	23.21	23.186	23.258	-0.013294	1284	58	0.8468043	0.03502804	0.8452849	343.7043	0	14.217316						95	4	2	NaN	NaN	NaN	0.46215	1	9689	9689		11.17	0.56537	1	11031	+		19975	11156	11476	11822	15871	15871					0.04541742960282136
PLDYGLSRL	9	Unmodified						0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.287474	1032.5604	2.1575	0.001116	-1.2945	-0.00066965	0.86295	0.00044639	517.2866661525085	23.2	0.12051	23.2	23.152	23.272	0	1266	64	0.85786515	0.038715184	0.85786515	348.19376		15.713867	-0.0051305	-0.00051547	0.0062902	NaN	11.17	116	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11161	+		19976	11156	11476	11822							0.04541742960282136
PLDYGLSRL	9	Unmodified						0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.287474	1032.5604	1.6797	0.00086889	-0.24837	-0.00012848	1.4313	0.00074042	517.2869525010121	23.223	0.072397	23.21	23.186	23.258	-0.013294	1284	58	0.8468043	0.03502804	0.8452849	343.7043		14.217316	0.0051305	0.00056688	-0.0062902	NaN	11.17	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11031	+		19977	11156	11476	11822							0.04541742960282136
PLEDQLVMV	9	Unmodified	_PLEDQLVMV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2757177552501	2	522.275718	1042.53688	1.2359	0.00064548	-2.008	-0.0010487	-0.77206	-0.00040323	522.2745648014792	26.77	0.096529	26.759	26.687	26.783	-0.010645	1296	61	0.8394264	0.036881566	0.83790696	340.66684	0	14.967743						106	5	2	NaN	NaN	NaN	0.25448	1	10120	10120		21.835	0	1	10486			19978	2882	11477	11823	15872	15872					0.017315611314415946
PLEDQLVMV	9	Unmodified						0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.275718	1042.53688	1.3831	0.00072235	-1.7024	-0.00088914	-0.31935	-0.00016679	522.2756493734377	26.746	0.072401	26.746	26.674	26.746	0	1296	58	0.8394264	0.03504312	0.8394264	340.66684		14.221649	-0.0065724	0.00020089	0.00075972	NaN	21.835	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6649.3			19979	2882	11477	11823							0.017315611314415946
PLEIMQGTGE	10	Unmodified	_PLEIMQGTGE_					0	0	0		nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.8427133767334	3	358.842713	1073.50631	1.3905	0.00049897	3.723	0.001336	5.1135	0.0018349	358.84415202798374	34.202	0.14481	34.201	34.153	34.298	-0.0012474	1521	73	0.70049703	0.044614255	0.6989776	426.26163	0	27.148376						200	7	4	NaN	NaN	NaN	0.64158	1	11402	11402		6.6174	0	1	22898			19980	3921	11478	11824	15873	15873					-0.02750217253583287
PLELMSYIV	9	Unmodified	_PLELMSYIV_					0	0	0			REV__ENSG00000139187|ENST00000356986|KLRG1	REV__ENSG00000139187|ENST00000356986|KLRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.78846098975	2	532.788461	1063.56237	1.5329	0.00081673	-5.7448	-0.0030608	-4.2119	-0.0022441	532.7856298237326	34.203	0.072365	34.203	34.179	34.252	0	1305	34	0.83389086	0.020299077	0.83389086	338.33316	0	8.235931						53	4	2	NaN	NaN	NaN	0.55027	1	11286	11286		7.5404	2.0745	1	3900.8	+		19981	9757	11479	11825	15874	15874					0.03313035653854968
PLELMSYIV	9	Unmodified						0	0	0			REV__ENSG00000139187|ENST00000356986|KLRG1	REV__ENSG00000139187|ENST00000356986|KLRG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.788461	1063.56237	1.5329	0.00081673	-5.7448	-0.0030608	-4.2119	-0.0022441	532.7856298237326	34.203	0.072365	34.203	34.179	34.252	0	1305	34	0.83389086	0.020299077	0.83389086	338.33316		8.235931	0.0011668	0.0014908	-0.00016297	NaN	7.5404	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3900.8	+		19982	9757	11479	11825							0.03313035653854968
PLEPCPKEQ	9	Unmodified	_PLEPCPKEQ_					0	0	0		DAG1|p.I773Sfs*70|1|0.27|ENSG00000173402|chr3:49532828-49532828|A/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.I773Sfs*70|1|0.27|ENSG00000173402|chr3:49532828-49532828|A/-|frameshift_variant	DAG1|p.I773Sfs*70|1|0.27|ENSG00000173402|chr3:49532828-49532828|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5081078885999	1	1040.50811	1039.50083	1.8253	0.0018992	-2.484	-0.0025846	-0.6587	-0.00068538	1040.5053041136428	25.346	0.096518	25.334	25.286	25.382	-0.012011	204	58	1.4979934	0.033706546	1.496474	303.98294	0	6.839966						109	5	2	NaN	NaN	NaN	0.41766	1	9971	9971		13.003	0	1	10568			19983	246	11480	11826	15875	15875					-0.017338960454253538
PLEPDLPFI	9	Unmodified	_PLEPDLPFI_					0	0	0			REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF	REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.78677558055	2	520.786776	1039.559	0.93154	0.00048514	-1.2888	-0.00067118	-0.35724	-0.00018604	520.7860630304494	32.32	0.21721	32.316	32.244	32.461	-0.0037613	1302	76	0.8357362	0.046149373	0.8342168	339.18192	0	18.729645						422	10	4	NaN	NaN	NaN	0.20577	1	9986	9986		24.961	1.6266	1	71417	+		19984	11549	11481	11827	15876	15876					0.04080108871517041
PLESLYAL	8	Unmodified	_PLESLYAL_					0	0	0			REV__ENSG00000096717|ENST00000212015|SIRT1	REV__ENSG00000096717|ENST00000212015|SIRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	905.4978607783002	1	905.497861	904.490584	2.0933	0.0018954	1.0105	0.00091505	3.1038	0.0028105	905.4986075251185	30.029	0.096594	30.029	30.004	30.101	0	297	85	1.4428991	0.049876332	1.4428991	293.37454	0	10.141022						201	5	3	NaN	NaN	NaN	0.40747	1	6162	6162		36.036	10.285	1	16081	+		19985	8763	11482	11828	15877	15877					0.03451864291673701
PLEVMLELY	9	Unmodified	_PLEVMLELY_					0	0	0			REV__nc|ENSG00000102910|Q86WA8-2|LONP2	REV__nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7937433329001	2	553.793743	1105.57293	0.75949	0.0004206	3.3111	0.0018336	4.0705	0.0022542	553.7965802364843	41.353	0.096218	41.353	41.305	41.401	0	1314	28	0.8283535	0.01661557	0.8283535	335.92316	0	6.7381287						56	5	2	NaN	NaN	NaN	0.53206	1	13087	13087		8.2903	3.3806	1	3602.9	+		19986	8899	11483	11829	15878	15878					0.024370183083192387
PLEVMLELY	9	Unmodified						0	0	0			REV__nc|ENSG00000102910|Q86WA8-2|LONP2	REV__nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.793743	1105.57293	0.75949	0.0004206	3.3111	0.0018336	4.0705	0.0022542	553.7965802364843	41.353	0.096218	41.353	41.305	41.401	0	1314	28	0.8283535	0.01661557	0.8283535	335.92316		6.7381287	0	0	0	NaN	8.2903	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3602.9	+		19987	8899	11483	11829							0.024370183083192387
PLEYWRGERID	11	Unmodified	_PLEYWRGERID_					0	0	0		ENST00000510189.5_1_4:68359569-68411187:-|nuORF;CENPC|p.S868Lfs*5|1|0.3|ENSG00000145241|chr4:67490035-67490035|A/-|frameshift_variant;ENSG00000145241|ENST00000273853|CENPC	ENST00000510189.5_1_4:68359569-68411187:-|nuORF	ENST00000510189.5_1_4:68359569-68411187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.36223296415	2	717.362233	1432.70991	1.2969	0.00093034	-10.12	-0.0072599	-8.8234	-0.0063296	717.3553092869703	21.753	0.12035	21.74	21.691	21.812	-0.013895	1062	49	0.9827221	0.02927047	0.98120266	397.40207	0	11.83667						150	6	3	NaN	NaN	NaN	0.63477	1	19326	19326		11.739	1.3787	1	12036			19988	93	11484	11830	15879	15879					0.010866435122352414
PLFFLFWLILI	11	Unmodified	_PLFFLFWLILI_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ABCA5|p.D181Rfs*21|1|0.18|ENSG00000154265|chr17:69308298-69308299|-/A|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4334100280001	2	711.43341	1420.85227	1.2705	0.00090388	7.5799	0.0053926	8.8504	0.0062965	711.9394937238667	20.213	0.12037	20.198	20.126	20.246	-0.014141	1278	37	0.85049206	0.022124112	0.8489726	343.9571	0	8.947479						171	6	4	NaN	NaN	NaN	0.78061	1	19268	19268		0.13493	0.021872	1	14399			19989	3837	11485	11831	15880	15880					0.15867507992379615
PLFGGGGG	8	Unmodified	_PLFGGGGG_					0	0	0			REV__ENST00000335648.3_1_1:23697575-23698100:+|nuORF	REV__ENST00000335648.3_1_1:23697575-23698100:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3304015195001	1	661.330402	660.323125	1.8236	0.001206	-0.90989	-0.00060174	0.91374	0.00060428	661.3293464930265	28.483	0.072365	28.475	28.475	28.547	-0.0083504	1104	31	0.9570911	0.01832366	0.95557165	195.67365	0	3.7462006						52	4	2	NaN	NaN	NaN	0.84651	1	2226	2226		1.6704	0	1	4593.2	+		19990	11760	11486	11832	15881	15881					-0.020623584624217983
PLFPQLYF	8	Unmodified	_PLFPQLYF_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5502306997998	1	1024.55023	1023.54295	1.4388	0.0014741	0.39104	0.00040064	1.8299	0.0018748	1024.5501815912737	40.032	0.096191	40.032	39.983	40.08	0	156	49	1.5263584	0.028352857	1.5263584	309.80215	0	5.75473						92	5	2	NaN	NaN	NaN	0.27293	1	9513	9513		44.247	0	1	5574.8			19991	4441	11487	11833	15882	15882					0.03212447425266873
PLFPQLYF	8	Unmodified	_PLFPQLYF_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5502306997998	1	1024.55023	1023.54295	1.8946	0.0019411	-4.1647	-0.004267	-2.2702	-0.0023259	1024.5469882102363	40.006	0.072144	40.012	39.988	40.06	0.0060463	159	46	1.5245869	0.026568055	1.5230675	309.44263	0	5.3924866						66	4	2	NaN	NaN	NaN	0.72043	1	9329	9329		17.78	0	1	3816.9			19992	4441	11487	11833	15883	15883					0.03212447425266873
PLFVQENYIH	10	Unmodified	_PLFVQENYIH_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.55215072893327	3	420.552151	1258.63462	1.4957	0.00062904	-5.3451	-0.0022479	-3.8494	-0.0016189	420.54990950508403	19.228	0.12006	19.228	19.204	19.324	0	1407	58	0.77102906	0.035191536	0.77102906	468.30753	0	21.374603						147	6	2	NaN	NaN	NaN	0.69717	1	17969	17969		4.2489	2.213	1	14645			19993	508	11488	11834	15884	15884					0.015650860518007903
PLGAGAGG	8	Unmodified	_PLGAGAGG_					0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	1.0168	0.00030522	3.4482	0.001035	4.4651	0.0013402	300.16209217816134	39.694	0.12056	39.694	39.694	39.815	0	1521	112	0.70049703	0.068739295	0.70049703	287.01874	0	28.164978						392	6	3	NaN	NaN	NaN	0.84651	1	599	599		1.6704	0	1	53300	+		19994	12802	11489	11835	15885	15885					-0.007746449794581167
PLGAGAGG	8	Unmodified	_PLGAGAGG_					0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	1.0552	0.00031674	5.2463	0.0015747	6.3015	0.0018915	300.1626414155328	41.065	0.096119	41.065	41.065	41.161	0	1515	40	0.7042165	0.024172664	0.7042165	288.54272	0	9.904388						117	5	3	NaN	NaN	NaN	0.84945	1	602	602		0	0	1	14250	+		19995	12802	11489	11835	15886	15886					-0.007746449794581167
PLGAGAGG	8	Unmodified	_PLGAGAGG_					0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	0.96516	0.0002897	5.5459	0.0016647	6.5111	0.0019544	300.16265815450777	40.176	0.1443	40.176	40.104	40.248	0	1515	40	0.7042165	0.024175227	0.7042165	288.54272	0	9.905487						124	7	2	NaN	NaN	NaN	0.84945	1	603	603		0	0	1	21700	+		19996	12802	11489	11835	15887	15887					-0.007746449794581167
PLGAGAGG	8	Unmodified	_PLGAGAGG_					0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	0.93933	0.00028195	5.581	0.0016752	6.5203	0.0019571	300.1626090692205	40.008	0.12029	40.008	39.935	40.056	0	1518	46	0.7023569	0.027894557	0.7023569	287.78076	0	11.429413						147	6	3	NaN	NaN	NaN	0.84945	1	604	604		0	0	1	19597	+		19997	12802	11489	11835	15888	15888					-0.007746449794581167
PLGAGAGG	8	Unmodified	_PLGAGAGG_					0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.1610139609501	2	300.161014	598.307475	1.058	0.00031756	6.4125	0.0019248	7.4705	0.0022424	300.16330693457087	41.017	0.072109	41.017	40.945	41.017	0	1518	40	0.7023569	0.024175227	0.7023569	287.78076	0	9.905457						86	4	3	NaN	NaN	NaN	0.84945	1	605	605		0	0	1	7551.7	+		19998	12802	11489	11835	15889	15889					-0.007746449794581167
PLGAGAGG	8	Unmodified						0	0	0			REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	REV__ENST00000565890.1_1_16:89724274-89724517:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	300.161014	598.307475	1.0168	0.00030522	3.4482	0.001035	4.4651	0.0013402	300.16209217816134	39.694	0.12056	39.694	39.694	39.815	0	1521	112	0.70049703	0.068739295	0.70049703	287.01874		28.164978	-0.086395	-0.0002773	-0.0001702	NaN	1.6704	392	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53300	+		19999	12802	11489	11835							-0.007746449794581167
PLGAVGAG	8	Unmodified	_PLGAVGAG_					0	0	0			REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF	REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3617016479002	1	641.361702	640.354425	2.2062	0.001415	4.7162	0.0030248	6.9224	0.0044398	641.3646868668434	56.373	0.23983	56.373	56.301	56.541	0	633	217	1.2423272	0.130059	1.2423272	254.1497	0	26.606873						680	11	4	NaN	NaN	NaN	0.84876	1	1750	1750		0.39566	0	1	170680	+		20000	11616	11490	11836	15890	15890					0.019862145716729174
PLGAVGAG	8	Unmodified						0	0	0			REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF	REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	641.361702	640.354425	2.2062	0.001415	4.7162	0.0030248	6.9224	0.0044398	641.3646868668434	56.373	0.23983	56.373	56.301	56.541	0	633	217	1.2423272	0.130059	1.2423272	254.1497		26.606873	0.001275	-0.00058399	-0.000141	NaN	0.39566	680	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170680	+		20001	11616	11490	11836							0.019862145716729174
PLGKRGGG	8	Unmodified	_PLGKRGGG_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.4365979255002	1	741.436598	740.429321	1.3883	0.0010293	-0.61544	-0.00045631	0.77284	0.00057301	741.436423013749	35.938	0.12054	35.94	35.891	36.012	0.0011024	666	46	1.2224985	0.027056336	1.2209791	249.38593	0	5.5194244						133	6	3	NaN	NaN	NaN	0.84887	1	3849	3849		0.32989	0	1	10240	+		20002	9113	11491	11837	15891	15891					0.04872397102906234
PLGPAPST	8	Unmodified	_PLGPAPST_					0	0	0		ENST00000253925.11_1_11:70229949-70230129:+|nuORF	ENST00000253925.11_1_11:70229949-70230129:+|nuORF	ENST00000253925.11_1_11:70229949-70230129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.3984810847002	1	739.398481	738.391205	1.8231	0.001348	4.7672	0.0035249	6.5903	0.0048729	739.4021220063489	30.269	0.28954	30.263	30.214	30.504	-0.0064106	510	232	1.316029	0.13847494	1.3145095	268.47928	0	28.249893						1269	13	4	NaN	NaN	NaN	0.84207	1	3817	3817		3.5732	0	1	554620			20003	6282	11492	11838	15892	15892					0.011544663975769254
PLGPKVLA	8	Unmodified	_PLGPKVLA_					0	0	0			REV__ENST00000288699.10_1_2:27171266-27171365:+|nuORF	REV__ENST00000288699.10_1_2:27171266-27171365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	794.513451263	1	794.513451	793.506175	1.925	0.0015294	-4.018	-0.0031924	-2.093	-0.001663	794.5096783399742	50.415	0.19165	50.415	50.319	50.511	0	474	43	1.3375392	0.025076628	1.3375392	272.52185	0	5.1093445						126	9	2	NaN	NaN	NaN	0.84876	1	4670	4670		0.39566	0	1	9513	+		20004	11621	11493	11839	15893	15893					0.10116195599357525
PLGVAVQL	8	Unmodified	_PLGVAVQL_					0	0	0			REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.4927158209001	1	796.492716	795.485439	1.6832	0.0013406	0.17848	0.00014216	1.8617	0.0014828	796.4928656918419	26.819	0.072405	26.819	26.795	26.867	0	498	37	1.3232021	0.021512508	1.3232021	269.58926	0	4.3829956						64	4	2	NaN	NaN	NaN	0.55881	1	4695	4695		27.861	2.1089	1	5023.8	+		20005	13196	11494	11840	15894	15894					0.07951605219716384
PLGVGANN	8	Unmodified	_PLGVGANN_					0	0	0			REV__ENSG00000170426|ENST00000293502|SDR9C7	REV__ENSG00000170426|ENST00000293502|SDR9C7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3889790309	1	741.388979	740.381703	1.3464	0.00099818	-9.9024	-0.0073416	-8.5561	-0.0063434	741.3815466355345	28.87	0.19312	28.87	28.846	29.039	0	558	52	1.2873057	0.030546188	1.2873057	262.60672	0	6.2313232						131	9	2	NaN	NaN	NaN	0.82332	1	3916	3916		6.0903	2.937	1	13360	+		20006	10582	11495	11841	15895	15895					0.0011269811204783764
PLGVGANN	8	Unmodified	_PLGVGANN_					0	0	0			REV__ENSG00000170426|ENST00000293502|SDR9C7	REV__ENSG00000170426|ENST00000293502|SDR9C7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3889790309	1	741.388979	740.381703	1.3244	0.00098187	-9.8475	-0.0073008	-8.5231	-0.006319	741.3815444299223	28.869	0.14482	28.861	28.837	28.982	-0.0083504	558	46	1.2873057	0.026949644	1.2857863	262.60672	0	5.4976196						145	7	2	NaN	NaN	NaN	0.82332	1	3842	3842		6.0903	2.5171	1	16032	+		20007	10582	11495	11841	15896	15896					0.0011269811204783764
PLGVGANN	8	Unmodified						0	0	0			REV__ENSG00000170426|ENST00000293502|SDR9C7	REV__ENSG00000170426|ENST00000293502|SDR9C7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.388979	740.381703	1.3464	0.00099818	-9.9024	-0.0073416	-8.5561	-0.0063434	741.3815466355345	28.87	0.19312	28.87	28.846	29.039	0	558	52	1.2873057	0.030546188	1.2873057	262.60672		6.2313232	0.0045727	-2.2844E-05	0.00075972	NaN	6.0903	131	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13360	+		20008	10582	11495	11841							0.0011269811204783764
PLGVGANN	8	Unmodified						0	0	0			REV__ENSG00000170426|ENST00000293502|SDR9C7	REV__ENSG00000170426|ENST00000293502|SDR9C7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.388979	740.381703	1.3244	0.00098187	-9.8475	-0.0073008	-8.5231	-0.006319	741.3815444299223	28.869	0.14482	28.861	28.837	28.982	-0.0083504	558	46	1.2873057	0.026949644	1.2857863	262.60672		5.4976196	-0.0045727	1.7899E-05	-0.00075972	NaN	6.0903	145	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16032	+		20009	10582	11495	11841							0.0011269811204783764
PLHEGPLR	8	Unmodified	_PLHEGPLR_					0	0	0			REV__ENST00000527545.1_1_8:144917610-144918087:-|nuORF	REV__ENST00000527545.1_1_8:144917610-144918087:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.7614264973	2	459.761426	917.5083	1.3796	0.00063429	0.58272	0.00026791	1.9623	0.0009022	459.7619190239935	17.717	0.07189	17.717	17.693	17.765	0	1299	55	0.8375814	0.03322214	0.8375814	340.52112	0	13.506561						122	4	3	NaN	NaN	NaN	0.72013	1	6376	6376		17.799	0	1	14263	+		20010	12634	11496	11842	15897	15897					0.04624624337179739
PLHFGTLR	8	Unmodified	_PLHFGTLR_					0	0	0			REV__CSMD3|p.G165Dfs*41|1|0.1|ENSG00000164796|chr8:113278612-113278612|C/-|frameshift_variant	REV__CSMD3|p.G165Dfs*41|1|0.1|ENSG00000164796|chr8:113278612-113278612|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.7717942183501	2	470.771794	939.529036	0.60528	0.00028495	-0.36229	-0.00017056	0.24299	0.00011439	470.7728199814698	57.211	0.024059	57.21	57.186	57.21	-0.00053787	1353	22	0.8043377	0.012940049	0.80281824	326.89273	0	5.2590027						21	2	2	NaN	NaN	NaN	0.84692	1	6679	6679		1.4396	0	1	1081.3	+		20011	8298	11497	11843	15898	15898					0.05685214716868359
PLHPSSSLFK	10	Unmodified	_PLHPSSSLFK_					0	0	0			REV__nc|ENSG00000166340|O14773-2|TPP1	REV__nc|ENSG00000166340|O14773-2|TPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.8085736551501	2	556.808574	1111.60259	1.0842	0.00060368	-10.487	-0.005839	-9.4023	-0.0052353	556.8030542911017	28.918	0.19306	28.909	28.861	29.054	-0.0083504	1227	64	0.88180584	0.03863156	0.8802864	357.5759	0	15.665253						178	9	2	NaN	NaN	NaN	0.65442	1	12974	12974		11.17	2.88	1	22394	+		20012	10427	11498	11844	15899	15899					0.051257183686630015
PLHSTLKK	8	Unmodified	_PLHSTLKK_					0	0	0			REV__GRM5|p.K259E|1|0.11|ENSG00000168959|chr11:88850042-88850042|T/C|missense_variant	REV__GRM5|p.K259E|1|0.11|ENSG00000168959|chr11:88850042-88850042|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475003	1	923.567278	922.560001	1.828	0.0016882	-1.6291	-0.0015046	0.19884	0.00018365	923.5655939521843	49.816	0.19173	49.816	49.768	49.96	0	345	49	1.4143922	0.028531194	1.4143922	287.49402	0	5.799347						145	9	2	NaN	NaN	NaN	0.82332	1	6460	6460		6.0903	0	1	14440	+		20013	10530	11499	11845	15900	15900					0.09562368031106416
PLIDDSQLR	9	Unmodified	_PLIDDSQLR_					0	0	0			REV__ENSG00000132153|ENST00000445061|DHX30	REV__ENSG00000132153|ENST00000445061|DHX30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.86098429756663	3	352.860984	1055.56112	1.8615	0.00065686	-3.4326	-0.0012112	-1.571	-0.00055436	352.8595977221501	14.908	0.07204	14.896	14.872	14.944	-0.011738	1470	31	0.7320868	0.018563092	0.73056734	445.5802	0	11.298309						57	4	2	NaN	NaN	NaN	0.27608	1	10679	10679		13.949	0.8476	1	4532.1	+		20014	9526	11500	11846	15901	15901					0.035565376093245504
PLIDDSQLR	9	Unmodified						0	0	0			REV__ENSG00000132153|ENST00000445061|DHX30	REV__ENSG00000132153|ENST00000445061|DHX30	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	352.860984	1055.56112	1.8615	0.00065686	-3.4326	-0.0012112	-1.571	-0.00055436	352.8595977221501	14.908	0.07204	14.896	14.872	14.944	-0.011738	1470	31	0.7320868	0.018563092	0.73056734	445.5802		11.298309	0.0053725	-0.00054621	-0.002616	NaN	13.949	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4532.1	+		20015	9526	11500	11846							0.035565376093245504
PLIDLPLI	8	Unmodified	_PLIDLPLI_					0	0	0		ENSG00000075218|ENST00000454366|GTSE1;TRMU-GTSE1|1|fusion	ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.5706317909002	1	893.570632	892.563355	1.6392	0.0014647	-0.17367	-0.00015519	1.4655	0.0013095	893.5699891986795	34.276	0.16875	34.276	34.228	34.396	0	294	106	1.4446791	0.062348843	1.4446791	293.7953	0	12.679474						324	8	4	NaN	NaN	NaN	0.044274	1	5966	5966		81.001	0	1	71322			20016	832	11501	11847	15902	15902					0.1127761808509149
PLIIYDQLV	9	Unmodified	_PLIIYDQLV_					0	0	0			REV__ENSG00000185982|ENST00000334391|DEFB128	REV__ENSG00000185982|ENST00000334391|DEFB128	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.3157001955	2	537.3157	1072.61685	1.2596	0.00067681	-1.7771	-0.00095488	-0.51752	-0.00027807	537.3146879340371	37.241	0.16846	37.241	37.193	37.362	0	1266	49	0.85786515	0.029476583	0.85786515	348.0226	0	11.95816						96	8	2	NaN	NaN	NaN	0.53206	1	11681	11681		8.2903	0.74991	1	6653.5	+		20017	10983	11502	11848	15903	15903					0.08344370796930889
PLIKMLFDL	9	Unmodified	_PLIKMLFDL_					0	0	0			REV__DCTN6|p.N173D|1|0.2|ENSG00000104671|chr8:30183117-30183117|A/G|missense_variant	REV__DCTN6|p.N173D|1|0.2|ENSG00000104671|chr8:30183117-30183117|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3224709826001	2	545.322471	1088.63039	1.1969	0.00065269	-3.6596	-0.0019957	-2.4627	-0.001343	545.3204925252943	27.253	0.12062	27.253	27.205	27.326	0	1212	40	0.8910048	0.023914814	0.8910048	361.39944	0	9.700043						95	6	2	NaN	NaN	NaN	0.36492	1	12350	12350		15.175	4.5704	1	10941	+		20018	8305	11503	11849	15904	15904					0.08961905304522588
PLILTYSP	8	Unmodified	_PLILTYSP_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.5185962204	1	903.518596	902.51132	2.0098	0.0018159	0.28641	0.00025877	2.2963	0.0020747	903.5172716176894	31.403	0.02413	31.398	31.374	31.398	-0.0050716	333	34	1.4215236	0.019609928	1.4200041	289.0379	0	3.9872742						41	2	2	NaN	NaN	NaN	0.75682	1	6005	6005		15.013	0	1	3125.8	+		20019	8683	11504	11850	15905	15905					0.0561645467132621
PLILTYSP	8	Unmodified						0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	903.518596	902.51132	2.0098	0.0018159	0.28641	0.00025877	2.2963	0.0020747	903.5172716176894	31.403	0.02413	31.398	31.374	31.398	-0.0050716	333	34	1.4215236	0.019609928	1.4200041	289.0379		3.9872742	-0.0030587	-0.0010445	0.00013155	NaN	15.013	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3125.8	+		20020	8683	11504	11850							0.0561645467132621
PLILYLLH	8	Unmodified	_PLILYLLH_					0	0	0		ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000393356.5_1_5:179921647-179922490:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.3102208871	2	491.310221	980.605889	1.751	0.00086027	-3.5249	-0.0017318	-1.7739	-0.00087155	491.30839657970955	55.869	0.047989	55.869	55.845	55.893	0	1152	40	0.92775106	0.023860574	0.92775106	376.8217	0	9.691376						52	3	2	NaN	NaN	NaN	0.84876	1	7911	7911		0.39566	0	1	10081			20021	6766	11505	11851	15906	15906					0.11481013213312963
PLILYLLH	8	Unmodified						0	0	0		ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000393356.5_1_5:179921647-179922490:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	491.310221	980.605889	-0.63463	-0.0003118	-0.37261	-0.00018307	-1.0072	-0.00049487	491.30950787212674	55.867	0.023979	55.866	55.866	55.89	-0.00059128	1149	40	0.92958635	0.02385801	0.9280669	377.56708		9.690369	-0.0014168	0.0021391	0.0001579	NaN	0.39566	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7203.6			20022	6766	11505	11851							0.11481013213312963
PLIRHRLPQ	9	Unmodified	_PLIRHRLPQ_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.23660838710003	3	377.236608	1128.688	1.4427	0.00054425	-1.0322	-0.0003894	0.41048	0.00015485	377.57047345126864	22.428	0.096191	22.414	22.366	22.462	-0.013731	1416	55	0.76547134	0.03335917	0.7639519	465.51126	0	20.286957						107	5	2	NaN	NaN	NaN	0.57723	1	13603	13603		6.4299	0.49636	1	10278	+		20023	13092	11506	11852	15907	15907					0.12879928344977998
PLIRHRLPQ	9	Unmodified						0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	377.236608	1128.688	1.4427	0.00054425	-1.0322	-0.0003894	0.41048	0.00015485	377.57047345126864	22.428	0.096191	22.414	22.366	22.462	-0.013731	1416	55	0.76547134	0.03335917	0.7639519	465.51126		20.286957	0.028954	-0.00035111	-0.00075972	NaN	6.4299	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10278	+		20024	13092	11506	11852							0.12879928344977998
PLISKLIVL	9	Unmodified	_PLISKLIVL_					0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.34680335865	2	498.346803	994.679054	1.7884	0.00089123	-2.0747	-0.0010339	-0.28629	-0.00014267	498.3461363234548	29.908	0.048239	29.908	29.884	29.932	0	1275	37	0.85233563	0.022121787	0.85233563	346.12268	0	8.983337						79	3	3	NaN	NaN	NaN	0.21199	1	8384	8384		24.562	0	1	7654.4	+		20025	10239	11507	11853	15908	15908					0.18150141935939246
PLISKLIVL	9	Unmodified						0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	498.346803	994.679054	1.7884	0.00089123	-2.0747	-0.0010339	-0.28629	-0.00014267	498.3461363234548	29.908	0.048239	29.908	29.884	29.932	0	1275	37	0.85233563	0.022121787	0.85233563	346.12268		8.983337	-0.02046	0.0004985	-0.00016197	NaN	24.562	79	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7654.4	+		20026	10239	11507	11853							0.18150141935939246
PLISKLIVL	9	Unmodified						0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.346803	994.679054	1.0487	0.00052262	-3.4682	-0.0017283	-2.4195	-0.0012057	498.34506452379065	29.955	0.072378	29.949	29.949	30.021	-0.0064106	1272	34	0.854179	0.020277202	0.8526596	346.87125		8.234314	0.02046	-0.00089039	0.00016197	NaN	24.562	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6270.8	+		20027	10239	11507	11853							0.18150141935939246
PLIVIAIAI	9	Unmodified	_PLIVIAIAI_					0	0	0		tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1	tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1	tr|U7T0T7|U7T0T7_FUSNUPutativeK(+)-stimulatedpyrophosphate-energizedsodiumpumpOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hppAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.6335663986998	1	922.633566	921.62629	-0.30034	-0.00027711	-1.3391	-0.0012355	-1.6394	-0.0015126	922.6320203930924	58.746	0.023949	58.746	58.746	58.77	-0.00045395	219	43	1.4891195	0.024850845	1.4876001	302.6878	0	5.051361						57	2	2	NaN	NaN	NaN	0.6907	1	6321	6321		0	0	1	5705.6			20028	13940	11508	11854	15909	15909					0.16234183873098118
PLKGQMSS	8	Unmodified	_PLKGQMSS_					0	0	0		ENST00000469154.5_1_7:150936191-150937662:-|nuORF;ENST00000470588.1_1_7:150936191-150937494:-|nuORF;ENST00000472789.1_1_7:150936247-150937287:-|nuORF;nc|ENSG00000082014|Q6STE5-2|SMARCD3;ENSG00000082014|ENST00000262188|SMARCD3	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.22074556530004	2	424.220746	846.426938	1.8932	0.00080314	-8.6703	-0.0036781	-6.777	-0.002875	424.2184775843605	54.524	0.21659	54.524	54.476	54.692	0	1392	73	0.780288	0.044430733	0.780288	317.62097	0	18.085815						587	10	6	NaN	NaN	NaN	0.81251	1	5340	5340		7.5404	0	1	259690			20029	7137	11509	11855	15910	15910					-0.002418194170672905
PLKGQMSS	8	Unmodified						0	0	0		ENST00000469154.5_1_7:150936191-150937662:-|nuORF;ENST00000470588.1_1_7:150936191-150937494:-|nuORF;ENST00000472789.1_1_7:150936247-150937287:-|nuORF;nc|ENSG00000082014|Q6STE5-2|SMARCD3;ENSG00000082014|ENST00000262188|SMARCD3	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	424.220746	846.426938	-0.33678	-0.00014287	-6.2909	-0.0026687	-6.6277	-0.0028116	424.21958183680005	54.522	0.16866	54.521	54.497	54.666	-0.0006218	1389	70	0.7821392	0.042577147	0.78061974	318.3745		17.331268	-0.0013694	0.0010323	0.00016587	NaN	7.5404	543	8	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253460			20030	7137	11509	11855							-0.002418194170672905
PLKLWENWNWR	11	Unmodified	_PLKLWENWNWR_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.6052489319334	3	514.605249	1540.79392	0.79569	0.00040947	0.75791	0.00039002	1.5536	0.00079949	514.6059493160406	31.934	0.096498	31.93	31.93	32.027	-0.0037613	1353	31	0.8043377	0.018486738	0.80281824	487.56775	0	11.206146						59	5	2	NaN	NaN	NaN	0.77734	1	19655	19655		0.70822	0	1	6236	+		20031	8631	11510	11856	15911	15911					0.04515219399763737
PLLECQNKI	9	Unmodified	_PLLECQNKI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5710424964	1	1057.57104	1056.56377	1.4871	0.0015727	-6.5092	-0.0068839	-5.0221	-0.0053112	1057.5640456233937	34.419	0.1206	34.419	34.419	34.539	-0.00064468	81	127	1.5705823	0.07426882	1.5690628	318.64575	0	15.067963						250	6	3	NaN	NaN	NaN	0.44082	1	10721	10721		12.049	2.9255	1	67306	+		20032	10371	11511	11857	15912	15912					0.037746697426428
PLLFADQFL	9	Unmodified	_PLLFADQFL_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.29476778815	2	532.294768	1062.57498	0.68419	0.00036419	-4.0244	-0.0021422	-3.3402	-0.001778	532.2927345322062	34.516	0.096481	34.515	34.467	34.563	-0.0006485	1254	64	0.8652351	0.038702607	0.86371565	351.05457	0	15.702942						150	5	2	NaN	NaN	NaN	0.14301	1	10991	10991		29.598	3.4834	1	25030			20033	6130	11512	11858	15913	15913					0.04619815108412695
PLLFADQFL	9	Unmodified						0	0	0		ENSG00000257335|ENST00000475668|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.294768	1062.57498	1.8423	0.00098066	-3.588	-0.0019099	-1.7456	-0.0009292	532.2931414530453	34.517	0.12068	34.517	34.469	34.589	0	1257	67	0.86339295	0.04054779	0.86339295	350.30713		16.4516	0.00096601	0.00020011	-0.00016137	NaN	29.598	156	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25242			20034	6130	11512	11858							0.04619815108412695
PLLGDSQA	8	Unmodified	_PLLGDSQA_					0	0	0			REV__ENST00000361183.7_1_7:116557985-116558045:+|nuORF	REV__ENST00000361183.7_1_7:116557985-116558045:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.4148594304	1	800.414859	799.407583	1.9079	0.0015271	2.9603	0.0023695	4.8682	0.0038966	800.417761223728	36.784	0.33669	36.784	36.712	37.048	0	603	61	1.2603331	0.035992384	1.2603331	256.7589	0	7.332489						552	15	4	NaN	NaN	NaN	0.84727	1	4742	4742		1.2418	0	1	111150	+		20035	11844	11513	11859	15914	15914					-0.00014452436334977392
PLLGDSQA	8	Unmodified						0	0	0			REV__ENST00000361183.7_1_7:116557985-116558045:+|nuORF	REV__ENST00000361183.7_1_7:116557985-116558045:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	800.414859	799.407583	1.9079	0.0015271	2.9603	0.0023695	4.8682	0.0038966	800.417761223728	36.784	0.33669	36.784	36.712	37.048	0	603	61	1.2603331	0.035992384	1.2603331	256.7589		7.332489	0.00025462	-0.00014001	-0.00014004	NaN	1.2418	552	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111150	+		20036	11844	11513	11859							-0.00014452436334977392
PLLKPGKY	8	Unmodified	_PLLKPGKY_					0	0	0			REV__ENSG00000124279|ENST00000264669|FASTKD3	REV__ENSG00000124279|ENST00000264669|FASTKD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.5662151150001	1	915.566215	914.558939	0.1454	0.00013312	-2.9457	-0.002697	-2.8003	-0.0025639	915.5648863398953	55.698	0.096333	55.698	55.674	55.77	-0.00059128	210	46	1.4944444	0.02662456	1.4929249	303.80475	0	5.412506						72	5	2	NaN	NaN	NaN	0.84727	1	6199	6199		1.2418	0	1	4993	+		20037	9374	11514	11860	15915	15915					0.09824153662179924
PLLPLPPE	8	Unmodified	_PLLPLPPE_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.5236815983001	1	875.523682	874.516405	-0.2838	-0.00024847	-8.36	-0.0073194	-8.6438	-0.0075678	875.5157192543907	58.362	0.071964	58.362	58.314	58.386	-0.00048065	363	43	1.4036897	0.024977922	1.4021703	285.54898	0	5.0812073						67	4	2	NaN	NaN	NaN	0.84692	1	5600	5600		1.4396	0.19772	1	5220.2	+		20038	9655	11515	11861	15916	15916					0.07412758533951092
PLLPRVRLYV	10	Unmodified	_PLLPRVRLYV_					0	0	0			REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF	REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1225.777939225	1	1225.77794	1224.77066	1.8622	0.0022826	-7.0407	-0.0086303	-5.1785	-0.0063477	1225.7694699840702	37.506	0.048267	37.506	37.482	37.53	0	60	64	1.582944	0.037077427	1.582944	320.58466	0	7.509094						149	3	3	NaN	NaN	NaN	0.77884	1	17105	17105		0.79988	0	1	13825	+		20039	9136	11516	11862	15917	15917					0.16726825353111963
PLLPRVRLYV	10	Unmodified						0	0	0			REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF	REV__ENST00000503417.1_1_5:137515369-137517456:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1225.77794	1224.77066	1.8622	0.0022826	-7.0407	-0.0086303	-5.1785	-0.0063477	1225.7694699840702	37.506	0.048267	37.506	37.482	37.53	0	60	64	1.582944	0.037077427	1.582944	320.58466		7.509094	-0.00015833	8.329E-05	0.00075972	NaN	0.79988	149	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13825	+		20040	9136	11516	11862							0.16726825353111963
PLLYLLPV	8	Unmodified	_PLLYLLPV_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.2993218498	2	464.299322	926.584091	1.1305	0.00052488	-2.7619	-0.0012823	-1.6314	-0.00075747	464.2974191164382	22.934	0.048267	22.921	22.896	22.945	-0.01354	1344	52	0.8098828	0.031408787	0.8083634	329.21262	0	12.767487						75	3	2	NaN	NaN	NaN	0.84651	1	6403	6403		1.6704	0.42852	1	5401			20041	4908	11517	11863	15918	15918					0.11786208464741321
PLMTAKAA	8	Unmodified	_PLMTAKAA_					0	0	0		ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	ENSG00000181409|ENST00000326724|AATK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.4491364467	1	802.449136	801.44186	1.9846	0.0015925	4.014	0.0032211	5.9986	0.0048136	802.4532045169511	55.604	0.07206	55.604	55.58	55.653	0	390	73	1.3876231	0.042878747	1.3876231	282.6787	0	8.734985						110	4	2	NaN	NaN	NaN	0.84692	1	4764	4764		1.4396	1.0439	1	8620.9			20042	5224	11518	11864	15919	15919					0.03319672450913913
PLNTRRLF	8	Unmodified	_PLNTRRLF_					0	0	0		ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.80362566300005	2	508.803626	1015.5927	1.134	0.00057696	6.8592	0.00349	7.9932	0.0040669	508.80739871659665	24.791	0.048271	24.779	24.779	24.827	-0.012394	1278	58	0.85049206	0.03504312	0.8489726	345.27695	0	14.226593						70	3	2	NaN	NaN	NaN	0.80692	1	9044	9044		8.2903	0	1	12293			20043	4175	11519	11865	15920	15920					0.08552575153942144
PLNTRRLF	8	Unmodified						0	0	0		ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.803626	1015.5927	1.6141	0.00082125	5.2606	0.0026766	6.8747	0.0034979	508.8071219064668	24.767	0.024137	24.767	24.767	24.791	0	1278	64	0.85049206	0.0387277	0.85049206	345.27695		15.722443	-0.0057857	-0.00099781	0.00075972	NaN	8.2903	68	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16030			20044	4175	11519	11865							0.08552575153942144
PLNTSVIGP	9	Unmodified	_PLNTSVIGP_					0	0	0			REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;REV__ENST00000525040.5_1_11:9801967-9809483:-|nuORF	REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.25564262765	2	449.255643	896.496732	0.86799	0.00038995	7.99	0.0035895	8.858	0.0039795	449.2589771927934	27.302	0.096516	27.302	27.229	27.326	0	1341	34	0.8117308	0.020327687	0.8117308	330.1255	0	8.267151						74	5	2	NaN	NaN	NaN	0.49672	1	6011	6011		9.746	2.1584	1	6517	+		20045	9570;12617	11520	11866	15921	15921					0.044343825231862866
PLNVDLVL	8	Unmodified	_PLNVDLVL_					0	0	0			REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	REV__ENST00000412485.1_1_X:13284560-13284650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.5294952577	1	882.529495	881.522219	1.7594	0.0015527	0.53645	0.00047343	2.2958	0.0020261	882.5296255854608	46.629	0.071907	46.629	46.605	46.677	0	342	46	1.4161754	0.02674365	1.4161754	288.0534	0	5.4396973						81	4	2	NaN	NaN	NaN	0.16485	1	5829	5829		52.758	0	1	7393.3	+		20046	12071	11521	11867	15922	15922					0.07671857045602337
PLPGARPE	8	Unmodified	_PLPGARPE_					0	0	0			REV__ENSG00000139266|ENST00000266643|MARCHF9	REV__ENSG00000139266|ENST00000266643|MARCHF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.4624783250001	1	836.462478	835.455202	-0.18847	-0.00015764	3.3354	0.00279	3.147	0.0026323	836.465669878179	56.299	0.047932	56.298	56.274	56.322	-0.00056458	471	43	1.3393306	0.025074005	1.3378111	272.65366	0	5.1044006						60	3	2	NaN	NaN	NaN	0.84727	1	5082	5082		1.2418	0	1	4917.9	+		20047	9762	11522	11868	15923	15923					0.030892465545207415
PLPGARPE	8	Unmodified						0	0	0			REV__ENSG00000139266|ENST00000266643|MARCHF9	REV__ENSG00000139266|ENST00000266643|MARCHF9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	836.462478	835.455202	-0.18847	-0.00015764	3.3354	0.00279	3.147	0.0026323	836.465669878179	56.299	0.047932	56.298	56.274	56.322	-0.00056458	471	43	1.3393306	0.025074005	1.3378111	272.65366		5.1044006	0.010712	0.0016247	0.00013592	NaN	1.2418	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4917.9	+		20048	9762	11522	11868							0.030892465545207415
PLPGDPSLQ	9	Unmodified	_PLPGDPSLQ_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.24527490660006	2	462.245275	922.475997	1.2498	0.00057772	-2.3194	-0.0010722	-1.0696	-0.00049443	462.2444147159765	19.012	0.095945	19.012	18.964	19.06	0	1377	34	0.7895419	0.020351946	0.7895419	320.96503	0	8.273499						76	5	2	NaN	NaN	NaN	0.17818	1	6446	6446		26.732	3.3971	1	6253.7	+		20049	10073	11523	11869	15924	15924					0.011657921435357821
PLPLGEPLL	9	Unmodified	_PLPLGEPLL_					0	0	0			REV__ENST00000540377.1_1_12:122190073-122212999:+|nuORF	REV__ENST00000540377.1_1_12:122190073-122212999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5764454503002	1	948.576445	947.569169	1.308	0.0012407	-1.2574	-0.0011927	0.050605	4.8003E-05	948.5754062012905	30.632	0.12069	30.632	30.584	30.704	0	261	88	1.4642475	0.051589012	1.4642475	297.5122	0	10.482086						240	6	3	NaN	NaN	NaN	0.02781	1	7034	7034		61.977	0	1	25173	+		20050	12694	11524	11870	15925	15925					0.09328716596769482
PLPLSCRGS	9	Unmodified	_PLPLSCRGS_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-5|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-5|FLYWCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.24729466680003	2	465.247295	928.480036	1.2068	0.00056145	4.7798	0.0022238	5.9866	0.0027853	465.249304996869	17.282	0.14394	17.268	17.196	17.34	-0.013567	1371	31	0.79324204	0.018496752	0.7917226	322.43857	0	7.518585						77	7	2	NaN	NaN	NaN	0.64666	1	6430	6430		3.5698	0.41644	1	6325.1	+		20051	12824	11525	11871	15926	15926					0.012935583655917071
PLPMTERL	8	Unmodified	_PLPMTERL_					0	0	0			REV__ENST00000505263.1_1_5:63871649-63897260:+|nuORF	REV__ENST00000505263.1_1_5:63871649-63897260:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.76532024445004	2	478.76532	955.516088	-0.32919	-0.0001576	-8.8749	-0.004249	-9.2041	-0.0044066	478.7603513088102	55.915	0.12007	55.914	55.866	55.986	-0.00059128	1356	55	0.8024889	0.03327614	0.8009695	326.0627	0	13.520569						176	6	3	NaN	NaN	NaN	0.82797	1	7083	7083		5.4659	1.8926	1	14364	+		20052	11004	11526	11872	15927	15927					0.036550155424492914
PLPMTERL	8	Unmodified						0	0	0			REV__ENST00000505263.1_1_5:63871649-63897260:+|nuORF	REV__ENST00000505263.1_1_5:63871649-63897260:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.76532	955.516088	-0.32919	-0.0001576	-8.8749	-0.004249	-9.2041	-0.0044066	478.7603513088102	55.915	0.12007	55.914	55.866	55.986	-0.00059128	1356	55	0.8024889	0.03327614	0.8009695	326.0627		13.520569	0.010591	0.00018753	0.00016477	NaN	5.4659	176	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14364	+		20053	11004	11526	11872							0.036550155424492914
PLPPSFTIRKV	11	Unmodified	_PLPPSFTIRKV_					0	0	0			REV__ENSG00000104951|ENST00000391826|IL4I1	REV__ENSG00000104951|ENST00000391826|IL4I1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.88207294925	2	627.882073	1253.74959	0.4952	0.00031093	1.446	0.00090794	1.9412	0.0012189	627.8837850190946	41.881	0.31188	41.89	41.842	42.154	0.0089989	1203	49	0.8965218	0.029422462	0.89500237	363.038	0	11.914337						258	14	4	NaN	NaN	NaN	0.76654	1	17113	17113		2.5994	0.67481	1	27020	+		20054	8945	11527	11873	15928	15928					0.13286815253582063
PLPSGVSA	8	Unmodified	_PLPSGVSA_					0	0	0		ARCN1|p.G418S|1|0.15|ENSG00000095139|chr11:118597717-118597717|G/A|missense_variant	ARCN1|p.G418S|1|0.15|ENSG00000095139|chr11:118597717-118597717|G/A|missense_variant	ARCN1|p.G418S|1|0.15|ENSG00000095139|chr11:118597717-118597717|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3984810847	1	727.398481	726.391205	1.5297	0.0011127	4.5096	0.0032803	6.0392	0.0043929	727.4011766340016	54.572	0.07217	54.572	54.572	54.644	0	558	64	1.2873057	0.037721395	1.2873057	262.69858	0	7.697754						79	4	2	NaN	NaN	NaN	0.84455	1	3712	3712		2.7852	1.3456	1	4994.8			20055	42	11528	11874	15929	15929					0.017064663975702388
PLPSNASLSA	10	Unmodified	_PLPSNASLSA_					0	0	0			REV__ENST00000379619.5_1_2:28638002-28638248:+|nuORF	REV__ENST00000379619.5_1_2:28638002-28638248:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.75600676839997	2	478.756007	955.497461	1.6268	0.00077884	7.0243	0.0033629	8.6511	0.0041418	478.7601202799086	55.1	0.072285	55.1	55.076	55.148	0	1356	58	0.8024889	0.035134315	0.8024889	326.06274	0	14.275574						129	4	4	NaN	NaN	NaN	0.68669	1	7222	7222		8.962	1.4216	1	13578	+		20056	11958	11529	11875	15930	15930					0.017931771722373924
PLQDLMVRNDT	11	Unmodified	_PLQDLMVRNDT_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.5554549820333	3	434.555455	1300.64454	1.7404	0.00075629	3.6911	0.001604	5.4315	0.0023603	434.55739717875605	17.09	0.072088	17.077	17.053	17.125	-0.013294	1347	37	0.8080346	0.022179246	0.8065152	490.6121	0	13.466522						56	4	2	NaN	NaN	NaN	0.76654	1	17961	17961		0.88464	0.39386	1	5275.9			20057	2389	11530	11876	15931	15931					0.006239059948711656
PLRKAPPG	8	Unmodified	_PLRKAPPG_					0	0	0		ENST00000370267.1_1_1:93811706-93812169:+|nuORF	ENST00000370267.1_1_1:93811706-93812169:+|nuORF	ENST00000370267.1_1_1:93811706-93812169:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.26106235655	2	418.261062	834.507572	1.7611	0.00073658	-2.4963	-0.0010441	-0.73522	-0.00030751	418.25998267927935	19.732	0.048027	19.732	19.732	19.78	0	1467	34	0.7339432	0.020420492	0.7339432	298.82404	0	8.314178						56	3	2	NaN	NaN	NaN	0.80692	1	5195	5195		8.2903	2.8244	1	6667.1			20058	6649	11531	11877	15932	15932					0.08369829688126629
PLRVSQVAKNR	11	Unmodified	_PLRVSQVAKNR_					0	0	0			REV__ENSG00000242498|ENST00000357484|ARPIN	REV__ENSG00000242498|ENST00000357484|ARPIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.38330275725	2	634.383303	1266.75205	1.7101	0.0010849	-10.995	-0.0069752	-9.2851	-0.0058903	634.8777871348497	39.694	1.0345	39.694	39.646	40.681	0	1248	115	0.8689189	0.0699237	0.8689189	351.82114	0	28.311768						2616	44	8	NaN	NaN	NaN	0.76803	1	18164	18164		2.3381	0.4135	1	2370900	+		20059	11347	11532	11878	15933	15933					0.129346637112576
PLRVSQVAKNR	11	Unmodified						0	0	0			REV__ENSG00000242498|ENST00000357484|ARPIN	REV__ENSG00000242498|ENST00000357484|ARPIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	634.383303	1266.75205	1.7101	0.0010849	-10.995	-0.0069752	-9.2851	-0.0058903	634.8777871348497	39.694	1.0345	39.694	39.646	40.681	0	1248	115	0.8689189	0.0699237	0.8689189	351.82114		28.311768	0	0	0	NaN	2.3381	2616	44	8	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2370900	+		20060	11347	11532	11878							0.129346637112576
PLRYLHASGF	10	Unmodified	_PLRYLHASGF_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.54521905506664	3	387.545219	1159.61383	1.3287	0.00051493	-3.0383	-0.0011775	-1.7096	-0.00066253	387.5430539916567	13.254	0.14378	13.243	13.196	13.339	-0.010098	1494	49	0.7172283	0.029720247	0.71570885	436.03278	0	18.068176						103	7	2	NaN	NaN	NaN	0.5358	1	14628	14628		10.861	1.9423	1	9211.1	+		20061	11133	11533	11879	15934	15934					0.04040540462779063
PLSGPGPI	8	Unmodified	_PLSGPGPI_					0	0	0			REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.4192165268001	1	737.419217	736.41194	0.63083	0.00046518	6.9149	0.0050992	7.5458	0.0055644	737.4241772993104	35.385	0.096504	35.385	35.337	35.434	0	564	82	1.2837118	0.04851961	1.2837118	261.89917	0	9.898865						167	5	2	NaN	NaN	NaN	0.84651	1	3865	3865		1.6704	0	1	19742	+		20062	10796	11534	11880	15935	15935					0.03319056777240803
PLSGPGPI	8	Unmodified						0	0	0			REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.419217	736.41194	0.63083	0.00046518	6.9149	0.0050992	7.5458	0.0055644	737.4241772993104	35.385	0.096504	35.385	35.337	35.434	0	564	82	1.2837118	0.04851961	1.2837118	261.89917		9.898865	0.00041123	0.00013143	0.00075972	NaN	1.6704	167	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19742	+		20063	10796	11534	11880							0.03319056777240803
PLSKQIHM	8	Unmodified	_PLSKQIHM_					0	0	0			REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	REV__ENST00000482953.5_1_21:42762449-42780157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.5236983733	1	953.523698	952.516422	1.5896	0.0015157	2.6968	0.0025715	4.2864	0.0040872	953.5270528012618	31.234	0.072414	31.229	31.205	31.277	-0.0050716	252	40	1.4695803	0.023103952	1.4680609	298.57352	0	4.694031						69	4	3	NaN	NaN	NaN	0.81251	1	7012	7012		7.5404	1.45	1	4465.4	+		20064	10893	11535	11881	15936	15936					0.03826435262294581
PLSLIATWYLS	11	Unmodified	_PLSLIATWYLS_					0	0	0			REV__ENST00000461822.5_1_3:137942325-137942498:+|nuORF	REV__ENST00000461822.5_1_3:137942325-137942498:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3528139833002	2	632.352814	1262.69108	0.87014	0.00055024	-3.4651	-0.0021912	-2.5949	-0.0016409	632.3506841439356	41.448	0.14439	41.456	41.384	41.529	0.0082588	1233	61	0.87812483	0.036825776	0.8766054	355.56088	0	14.911102						185	7	3	NaN	NaN	NaN	0.76304	1	17273	17273		3.2116	0	1	13124	+		20065	12266	11536	11882	15937	15937					0.07023713888497696
PLSLLAPL	8	Unmodified	_PLSLLAPL_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.5287669762	1	823.528767	822.521491	1.4902	0.0012272	-0.62113	-0.00051152	0.86908	0.00071572	823.5288120928919	29.183	0.072443	29.175	29.151	29.224	-0.0077209	408	52	1.3769034	0.030383706	1.375384	280.37387	0	6.18692						78	4	2	NaN	NaN	NaN	0.50567	1	4941	4941		30.791	2.1246	1	5972.6			20066	6005	11537	11883	15938	15938					0.103130623965626
PLSNDISLV	9	Unmodified	_PLSNDISLV_					0	0	0			REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF	REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.5251381613002	1	957.525138	956.517862	1.2931	0.0012382	-0.80344	-0.00076932	0.48965	0.00046885	957.5247526781721	27.832	0.072454	27.822	27.798	27.87	-0.009552	276	106	1.4553556	0.062229633	1.4538362	295.6659	0	12.642395						289	4	3	NaN	NaN	NaN	0.31737	1	7113	7113		17.799	0	1	44004	+		20067	12152	11538	11884	15939	15939					0.037863478320673494
PLSPAGGA	8	Unmodified	_PLSPAGGA_					0	0	0		nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND	nc|ENSG00000008382|Q8N594-2|MPND	nc|ENSG00000008382|Q8N594-2|MPND	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3566162700001	1	669.356616	668.34934	1.3408	0.00089745	5.1835	0.0034696	6.5243	0.0043671	669.3600147040656	27.495	0.12071	27.495	27.446	27.567	0	681	64	1.2134778	0.03791547	1.2134778	248.03047	0	7.7497864						90	6	2	NaN	NaN	NaN	0.84692	1	2566	2566		1.4396	0	1	8690.6			20068	374	11539	11885	15940	15940					0.0018991070905940433
PLSPAGGA	8	Unmodified						0	0	0		nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND	nc|ENSG00000008382|Q8N594-2|MPND	nc|ENSG00000008382|Q8N594-2|MPND	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.356616	668.34934	1.216	0.00081394	2.6829	0.0017958	3.8989	0.0026097	669.3582038104757	27.494	0.1448	27.484	27.46	27.605	-0.009552	681	70	1.2134778	0.041526556	1.2119584	248.03049		8.487869	-0.0051656	-0.0011048	-0.00075972	NaN	1.4396	118	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10069			20069	374	11539	11885							0.0018991070905940433
PLSPGAGGL	9	Unmodified	_PLSPGAGGL_					0	0	0		ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.71615332640005	2	384.716153	767.417754	1.572	0.00060477	1.9295	0.00074231	3.5015	0.0013471	384.71689336644135	24.26	0.048279	24.248	24.248	24.296	-0.012749	1368	121	0.7950918	0.074067354	0.79357237	324.17758	0	30.198975						179	3	3	NaN	NaN	NaN	0.27442	1	4251	4251		20.555	0	1	101980			20070	6685	11540	11886	15941	15941					0.024741552889167906
PLSVPPFRA	9	Unmodified	_PLSVPPFRA_					0	0	0		ENST00000415912.6_1_1:21545281-21545563:-|nuORF	ENST00000415912.6_1_1:21545281-21545563:-|nuORF	ENST00000415912.6_1_1:21545281-21545563:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5672777475	1	983.567278	982.560001	1.3742	0.0013516	-6.4342	-0.0063284	-5.06	-0.0049768	983.5587714607736	35.119	0.24139	35.119	35.094	35.336	-4.5776E-05	258	115	1.4660252	0.06750274	1.4645058	297.72144	0	13.708496						455	11	4	NaN	NaN	NaN	0.45297	1	7807	7807		11.548	0.94349	1	54385			20071	6883	11541	11887	15942	15942					0.06802368031083006
PLTGILYS	8	Unmodified	_PLTGILYS_					0	0	0		ENSG00000127515|ENST00000641129|OR7A10;ENSG00000188269|ENST00000322301|OR7A5	ENSG00000127515|ENST00000641129|OR7A10	ENSG00000127515|ENST00000641129|OR7A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.24728627929994	2	432.247286	862.48002	0.93701	0.00040502	-2.9282	-0.0012657	-1.9912	-0.00086071	432.24588740519414	32.345	0.072411	32.345	32.321	32.394	0	1413	37	0.7673241	0.022232234	0.7673241	312.25122	0	9.047058						69	4	2	NaN	NaN	NaN	0.84207	1	5564	5564		3.5732	0	1	7348.9			20072	2536	11542	11888	15943	15943					0.043278816372207984
PLTPGLAIYSV	11	Unmodified	_PLTPGLAIYSV_					0	0	0		ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	ENSG00000143552|ENST00000368559|NUP210L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8264320572999	2	565.826432	1129.63831	1.9726	0.0011161	-6.8466	-0.003874	-4.874	-0.0027578	565.8229965466461	21.778	0.048178	21.778	21.754	21.802	0	1530	40	0.6949163	0.024183095	0.6949163	281.7363	0	9.804443						74	3	3	NaN	NaN	NaN	0.77843	1	14083	14083		0.51604	0	1	6303.2			20073	3434	11543	11889	15944	15944					0.07867755825645872
PLTVPVPLS	9	Unmodified	_PLTVPVPLS_					0	0	0			REV__ENST00000502001.2_1_5:8460328-8460403:+|nuORF	REV__ENST00000502001.2_1_5:8460328-8460403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.5607953861	1	922.560795	921.553519	1.2262	0.0011313	-2.9482	-0.0027199	-1.722	-0.0015887	922.5588953565825	31.863	0.096529	31.863	31.815	31.911	0	309	49	1.435777	0.028491735	1.435777	291.84543	0	5.791382						78	5	2	NaN	NaN	NaN	0.61413	1	6440	6440		4.9097	0	1	5498.2	+		20074	12518	11544	11890	15945	15945					0.08960430079707749
PLVCVPSS	8	Unmodified	_PLVCVPSS_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	801.4175019673	1	801.417502	800.410226	1.7475	0.0014005	-0.8138	-0.00065219	0.93367	0.00074826	801.4174355082166	29.256	0.048244	29.248	29.248	29.296	-0.0077229	453	61	1.3500742	0.035800934	1.3485547	275.03546	0	7.2933044						77	3	2	NaN	NaN	NaN	0.83849	1	4657	4657		4.0537	0	1	4928	+		20075	12817	11545	11891	15946	15946					0.0020367969697190347
PLVEGPGK	8	Unmodified	_PLVEGPGK_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.4563303146001	1	796.45633	795.449054	1.916	0.001526	5.2113	0.0041505	7.1273	0.0056766	796.4608675469461	34.492	0.07235	34.491	34.467	34.539	-0.0006485	495	46	1.3249949	0.026886344	1.3234755	269.9547	0	5.477844						65	4	2	NaN	NaN	NaN	0.77489	1	4607	4607		12.588	0	1	4236	+		20076	8917	11546	11892	15947	15947					0.04314728323004147
PLVPADSG	8	Unmodified	_PLVPADSG_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068001	1	755.393396	754.386119	1.4961	0.0011301	5.1591	0.0038971	6.6552	0.0050273	755.3977264382864	36.734	0.12019	36.735	36.639	36.759	0.0016785	561	55	1.2855089	0.032348156	1.2839894	262.15158	0	6.59671						133	6	2	NaN	NaN	NaN	0.84692	1	4068	4068		1.4396	0	1	18203			20077	2062	11547	11893	15948	15948					-0.0008983746504327428
PMAFLLLPP	9	Unmodified	_PMAFLLLPP_					0	0	0		VANGL2|p.L124M|1|0.21|ENSG00000162738|chr1:160419179-160419179|C/A|missense_variant	VANGL2|p.L124M|1|0.21|ENSG00000162738|chr1:160419179-160419179|C/A|missense_variant	VANGL2|p.L124M|1|0.21|ENSG00000162738|chr1:160419179-160419179|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7908067134501	2	499.790807	997.56706	1.877	0.00093813	-10.757	-0.0053762	-8.8798	-0.004438	500.28725957964843	53.242	0.072067	53.242	53.218	53.29	0	1335	31	0.8154261	0.018474758	0.8154261	331.12115	0	7.5020447						72	4	3	NaN	NaN	NaN	0.65388	1	8494	8494		3.1533	0.36816	1	3171.6			20078	14018	11548	11894	15949	15949					0.06817964587310144
PMAVLGGD	8	Unmodified	_PMAVLGGD_					0	0	0		SALL3|p.L1184V|1|0.33|ENSG00000256463|chr18:78996969-78996969|C/G|missense_variant	SALL3|p.L1184V|1|0.33|ENSG00000256463|chr18:78996969-78996969|C/G|missense_variant	SALL3|p.L1184V|1|0.33|ENSG00000256463|chr18:78996969-78996969|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.18891412065005	2	380.188914	758.363275	1.3103	0.00049817	5.1708	0.0019659	6.4812	0.0024641	380.19056228051556	31.017	0.14485	31.012	30.94	31.084	-0.0050716	1332	31	0.8172735	0.01847279	0.81575406	333.29126	0	7.5333557						122	7	3	NaN	NaN	NaN	0.84876	1	4116	4116		0.39566	0	1	12644			20079	13671	11549	11895	15950	15950					-0.025571798541591306
PMEKYSSR	8	Unmodified	_PMEKYSSR_					0	0	0			REV__ENST00000473125.5_1_15:34683626-34692928:-|nuORF	REV__ENST00000473125.5_1_15:34683626-34692928:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2422092889	2	499.242209	996.469866	2.0172	0.0010071	-2.4077	-0.001202	-0.39048	-0.00019494	499.23955905842	17.837	0.11991	17.837	17.765	17.885	0	1527	52	0.69677675	0.03162414	0.69677675	282.94525	0	12.841827						125	6	2	NaN	NaN	NaN	0.77891	1	8437	8437		12.049	0.50025	1	11344	+		20080	12335	11550	11896	15951	15951					-0.02851049359640001
PMERPIAAY	9	Unmodified	_PMERPIAAY_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2682270741501	2	524.268227	1046.5219	1.9205	0.0010068	-1.1415	-0.00059843	0.779	0.0004084	524.2678999101051	18.077	0.16791	18.077	17.957	18.125	0	1278	61	0.85049206	0.03687364	0.85049206	345.1405	0	14.963776						263	8	4	NaN	NaN	NaN	0.14301	1	10480	10480		29.598	6.2639	1	32286	+		20081	10758	11551	11897	15952	15952					0.000501140541246059
PMERPIAAY	9	Unmodified						0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.268227	1046.5219	1.9205	0.0010068	-1.1415	-0.00059843	0.779	0.0004084	524.2678999101051	18.077	0.16791	18.077	17.957	18.125	0	1278	61	0.85049206	0.03687364	0.85049206	345.1405		14.963776	-0.11148	0.00022677	-0.0020054	NaN	29.598	263	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32286	+		20082	10758	11551	11897							0.000501140541246059
PMESWSGAATI	11	Unmodified	_PMESWSGAATI_					0	0	0			REV__ENST00000277905.6_1_10:118891811-118897401:-|nuORF	REV__ENST00000277905.6_1_10:118891811-118897401:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2658813504501	2	575.265881	1148.51721	0.70726	0.00040686	3.2001	0.0018409	3.9073	0.0022478	575.2683608269347	32.369	0.12066	32.365	32.292	32.413	-0.0037613	1215	49	0.8891654	0.02942884	0.88764596	360.4182	0	11.9288025						123	6	2	NaN	NaN	NaN	0.66717	1	14249	14249		9.6116	0.64966	1	15344	+		20083	11599	11552	11898	15953	15953					-0.051108148792991415
PMFCQHFTYSF	11	Unmodified	_PMFCQHFTYSF_					0	0	0		L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.2966585501001	2	704.296659	1406.57876	1.2299	0.00086622	-7.5282	-0.0053021	-6.2983	-0.0044358	704.2903545830868	29.787	0.16894	29.787	29.739	29.908	0	1098	37	0.960755	0.021978915	0.960755	388.58783	0	8.889587						186	8	3	NaN	NaN	NaN	0.6875	1	20111	20111		8.2775	0.68994	1	21131			20084	7839	11553	11899	15954	15954					-0.10826206451656617
PMFCQHFTYSF	11	Unmodified						0	0	0		L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|11|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	704.296659	1406.57876	0.73294	0.00051621	-6.9653	-0.0049057	-6.2324	-0.0043894	704.2921388855317	29.786	0.12064	29.779	29.731	29.852	-0.0070648	1092	40	0.9644182	0.023806632	0.96289873	390.06943		9.628845	-0.0039734	0.00052112	0.0010719	NaN	8.2775	189	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19383			20085	7839	11553	11899							-0.10826206451656617
PMFSEAVVL	9	Unmodified	_PMFSEAVVL_					0	0	0			REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5121306340001	1	992.512131	991.504854	1.5325	0.001521	-3.3809	-0.0033556	-1.8484	-0.0018346	992.5092453880503	30.197	0.12066	30.19	30.118	30.238	-0.0064106	228	40	1.4837929	0.023086786	1.4822735	301.29208	0	4.6879272						105	6	3	NaN	NaN	NaN	0.36492	1	8100	8100		15.175	0	1	6477.7	+		20086	13113	11554	11900	15955	15955					0.008761934483004552
PMFSEAVVL	9	Unmodified						0	0	0			REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.512131	991.504854	2.1663	0.00215	-4.2472	-0.0042154	-2.0809	-0.0020653	992.5077211137728	30.198	0.1448	30.198	30.125	30.27	0	228	49	1.4837929	0.028416157	1.4837929	301.29208		5.77005	0.0037016	-0.00040903	0.00075972	NaN	15.175	112	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7700.5	+		20087	13113	11554	11900							0.008761934483004552
PMFSEAVVL	9	Unmodified						0	0	0			REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	REV__nc|ENSG00000124508|Q8WVV5-3|BTN2A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.512131	991.504854	1.5325	0.001521	-3.3809	-0.0033556	-1.8484	-0.0018346	992.5092453880503	30.197	0.12066	30.19	30.118	30.238	-0.0064106	228	40	1.4837929	0.023086786	1.4822735	301.29208		4.6879272	-0.0037016	0.00045073	-0.00075972	NaN	15.175	105	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6477.7	+		20088	13113	11554	11900							0.008761934483004552
PMGATIEC	8	Unmodified	_PMGATIEC_					0	0	0		nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;DENND4C|p.E323*|1|0.22|ENSG00000137145|chr9:19296165-19296166|-/T|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENSG00000198837|ENST00000361217|DENND4B	nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000568515.1_1_15:66007788-66048788:-|nuORF;ENSG00000198837|ENST00000361217|DENND4B	nc|ENSG00000137145|Q5VZ89-5|DENND4C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.1802318088	2	411.180232	820.345911	1.3987	0.00057512	-7.3981	-0.0030419	-5.9994	-0.0024668	411.17724601809925	28.822	0.12067	28.822	28.798	28.918	0	1443	31	0.7487872	0.018548965	0.7487872	304.95285	0	7.554291						55	6	2	NaN	NaN	NaN	0.8439	1	5016	5016		3.1533	0	1	3883			20089	3070;4950;5818	11555	11901	15956	15956					-0.0714484345147639
PMGGISPA	8	Unmodified	_PMGGISPA_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3599870884	1	729.359987	728.352711	0.92119	0.00067188	-4.9371	-0.0036009	-4.0159	-0.002929	729.3565486080083	41.063	0.096207	41.07	41.046	41.143	0.0074959	678	82	1.2152823	0.04869628	1.213763	247.98857	0	9.936905						169	5	2	NaN	NaN	NaN	0.84207	1	3661	3661		3.5732	0.41988	1	16168			20090	5219	11556	11902	15957	15957					-0.022331625086053464
PMPGQGGG	8	Unmodified	_PMPGQGGG_					0	0	0			REV__ENST00000485575.1_1_1:156120026-156126208:+|nuORF	REV__ENST00000485575.1_1_1:156120026-156126208:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.65778116775004	2	350.657781	699.301009	2.0029	0.00070234	5.3669	0.0018819	7.3698	0.0025843	350.6598446617323	35.987	0.048286	35.988	35.964	36.012	0.0011024	1506	37	0.70979416	0.022309542	0.7082747	289.893	0	9.111633						54	3	2	NaN	NaN	NaN	0.84876	1	3142	3142		0.39566	0.065779	1	4130.8	+		20091	11093	11557	11903	15958	15958					-0.060669062024885534
PMSPPPPPCL	10	Unmodified	_PMSPPPPPCL_					0	0	0		KMT2D|p.E649Pfs*276|1|0.23|ENSG00000167548|chr12:49051723-49051738|ATAGGCGCGATACCTC/-|frameshift_variant	KMT2D|p.E649Pfs*276|1|0.23|ENSG00000167548|chr12:49051723-49051738|ATAGGCGCGATACCTC/-|frameshift_variant	KMT2D|p.E649Pfs*276|1|0.23|ENSG00000167548|chr12:49051723-49051738|ATAGGCGCGATACCTC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2537311029	2	518.253731	1034.49291	2.1184	0.0010979	-6.8473	-0.0035487	-4.7289	-0.0024508	518.2502775969097	22.887	0.1688	22.887	22.79	22.959	0	1230	97	0.8799654	0.058953166	0.8799654	357.15512	0	23.927551						245	8	2	NaN	NaN	NaN	0.44258	1	9958	9958		21.835	0	1	50037			20092	7835	11558	11904	15959	15959					-0.022957465665513155
PNAPQAGPQL	10	Unmodified	_PNAPQAGPQL_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5159704585002	1	992.51597	991.508694	1.367	0.0013567	-11.243	-0.011159	-9.8763	-0.0098024	992.5035144329108	26.915	0.096519	26.904	26.88	26.976	-0.010645	201	109	1.4997677	0.06393635	1.4982482	304.53586	0	12.9826355						164	5	3	NaN	NaN	NaN	0.47601	1	8098	8098		20.449	1.2851	1	20570	+		20093	10219	11559	11905	15960	15960					0.012599992663922421
PNCSETALI	9	Unmodified	_PNCSETALI_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.2287675626499	2	474.228768	946.442982	0.55214	0.00026184	-1.3246	-0.00062816	-0.77246	-0.00036632	474.2280283501462	20.646	0.16875	20.632	20.559	20.728	-0.014086	1383	31	0.7858409	0.018508792	0.7843215	319.34177	0	7.5214233						112	8	2	NaN	NaN	NaN	0.21199	1	6856	6856		24.562	5.3984	1	8866.3			20094	3560	11560	11906	15961	15961					-0.032381579708498975
PNEQQITR	8	Unmodified	_PNEQQITR_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.25670526014994	2	493.256705	984.498858	2.1841	0.0010773	-4.2838	-0.002113	-2.0997	-0.0010357	493.25579706446155	13.613	0.12003	13.613	13.565	13.685	0	1311	67	0.83019954	0.040622413	0.83019954	337.18103	0	16.498566						146	6	2	NaN	NaN	NaN	0.5868	1	8028	8028		26.115	9.2566	1	11830	+		20095	8788	11561	11907	15962	15962					0.005988112609884411
PNEQQITR	8	Unmodified						0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	493.256705	984.498858	2.1841	0.0010773	-4.2838	-0.002113	-2.0997	-0.0010357	493.25579706446155	13.613	0.12003	13.613	13.565	13.685	0	1311	67	0.83019954	0.040622413	0.83019954	337.18103		16.498566	0	0	0	NaN	26.115	146	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11830	+		20096	8788	11561	11907							0.005988112609884411
PNESFAYHHI	10	Unmodified	_PNESFAYHHI_					0	0	0			REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.52448361296666	3	405.524484	1213.55162	1.4838	0.00060172	2.1671	0.00087881	3.6509	0.0014805	405.5256746275145	11.98	0.096038	11.98	11.908	12.004	0	1482	34	0.72465914	0.020431578	0.72465914	440.32043	0	12.414703						53	5	2	NaN	NaN	NaN	0.77318	1	16813	16813		0.81135	0.17962	1	3321.8	+		20097	11031	11562	11908	15963	15963					-0.04661230676197192
PNESFAYHHI	10	Unmodified						0	0	0			REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	405.524484	1213.55162	1.4838	0.00060172	2.1671	0.00087881	3.6509	0.0014805	405.5256746275145	11.98	0.096038	11.98	11.908	12.004	0	1482	34	0.72465914	0.020431578	0.72465914	440.32043		12.414703	0.027063	-0.00029525	-0.0020258	NaN	0.81135	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3321.8	+		20098	11031	11562	11908							-0.04661230676197192
PNESFAYHHI	10	Unmodified						0	0	0			REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	REV__ENST00000461652.2_1_13:31835091-31857210:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	405.524484	1213.55162	1.6549	0.00067112	2.6399	0.0010706	4.2949	0.0017417	405.5250860660632	11.934	0.095876	11.926	11.902	11.998	-0.0081854	1473	40	0.7302302	0.024141133	0.7287108	443.70554		14.668762	-0.027063	0.00027998	0.0020258	NaN	0.81135	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3963.9	+		20099	11031	11562	11908							-0.04661230676197192
PNFWKWLLVP	10	Unmodified	_PNFWKWLLVP_					0	0	0		nc|ENSG00000290203|Q96PH1-5|NOX5;ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3660587443001	2	650.366059	1298.71756	2.0925	0.0013609	4.9151	0.0031966	7.0076	0.0045575	650.3702097501217	27.011	0.048269	27.001	26.953	27.001	-0.010126	1104	28	0.9570911	0.0164904	0.95557165	387.4187	0	6.67511						35	3	2	NaN	NaN	NaN	0.77884	1	17928	17928		0.79988	0.20265	1	2213.6			20100	6123	11563	11909	15964	15964					0.0801544757046031
PNGGGGGP	8	Unmodified	_PNGGGGGP_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.2736149221	1	612.273615	611.266338	0.25153	0.000154	-3.4137	-0.0020901	-3.1622	-0.0019361	612.2710253631495	42.696	0.14402	42.706	42.61	42.754	0.0097351	786	52	1.1501974	0.030795574	1.148678	235.53603	0	6.3062744						111	7	2	NaN	NaN	NaN	0.84945	1	815	815		0	0	1	8358.3			20101	5247	11564	11910	15965	15965					-0.054844060189566335
PNGGGGPA	8	Unmodified	_PNGGGGPA_					0	0	0			REV__ENST00000234831.9_2_1:54518888-54518954:-|nuORF	REV__ENST00000234831.9_2_1:54518888-54518954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.2892649862999	1	626.289265	625.281989	1.8675	0.0011696	-5.4761	-0.0034297	-3.6087	-0.0022601	626.285724188173	18.146	0.12	18.132	18.132	18.252	-0.013948	759	43	1.1664921	0.025337934	1.1649727	238.7559	0	5.1861267						118	6	2	NaN	NaN	NaN	0.84945	1	1180	1180		0	0	1	8729	+		20102	11487	11565	11911	15966	15966					-0.045641195019129555
PNGGGGPA	8	Unmodified	_PNGGGGPA_					0	0	0			REV__ENST00000234831.9_2_1:54518888-54518954:-|nuORF	REV__ENST00000234831.9_2_1:54518888-54518954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.2892649862999	1	626.289265	625.281989	2.3672	0.0014826	-5.6637	-0.0035471	-3.2965	-0.0020645	626.2861966375192	18.098	0.048021	18.084	18.036	18.084	-0.013786	768	43	1.1610622	0.02534616	1.1595428	237.64453	0	5.187805						51	3	2	NaN	NaN	NaN	0.84945	1	1181	1181		0	0	1	3367.7	+		20103	11487	11565	11911	15967	15967					-0.045641195019129555
PNGGSHAR	8	Unmodified	_PNGGSHAR_					0	0	0			REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3856249875	1	795.385625	794.378349	1.6281	0.0012949	0.51122	0.00040662	2.1393	0.0017016	795.3859547247812	26.529	0.21716	26.518	26.446	26.663	-0.010645	528	115	1.3052634	0.068181396	1.303744	265.94073	0	13.891602						422	10	2	NaN	NaN	NaN	0.76406	1	4593	4593		14.042	0.30454	1	89962	+		20104	12151	11566	11912	15968	15968					-0.027065519419579687
PNINAVAT	8	Unmodified	_PNINAVAT_					0	0	0		nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4308438456	1	799.430844	798.423567	1.3882	0.0011097	4.9019	0.0039188	6.2901	0.0050285	799.4339040172747	33.311	0.072399	33.311	33.262	33.335	0	471	37	1.3393306	0.02149427	1.3393306	272.85822	0	4.3789673						46	4	2	NaN	NaN	NaN	0.80071	1	4733	4733		9.1232	0.83292	1	2695.6			20105	1700	11567	11913	15969	15969					0.01629253800558672
PNIVDCYI	8	Unmodified	_PNIVDCYI_					0	0	0		ENSG00000188910|ENST00000373366|GJB3	ENSG00000188910|ENST00000373366|GJB3	ENSG00000188910|ENST00000373366|GJB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.72840342189994	2	468.728403	935.442254	0.21535	0.00010094	-0.57555	-0.00026978	-0.36019	-0.00016883	468.7284728209105	31.234	0.19306	31.229	31.181	31.374	-0.0050716	1368	73	0.7950918	0.044377804	0.79357237	323.15543	0	18.036804						464	9	5	NaN	NaN	NaN	0.67593	1	6586	6586		20.555	1.2707	1	124940			20106	5572	11568	11914	15970	15970					-0.028049526198969943
PNKELQEI	8	Unmodified	_PNKELQEI_					0	0	0			REV__ENSG00000173597|ENST00000310613|SULT1B1	REV__ENSG00000173597|ENST00000310613|SULT1B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5203871344	1	970.520387	969.513111	1.9622	0.0019044	-10.997	-0.010673	-9.0347	-0.0087684	970.5099180109229	25.178	0.12066	25.178	25.153	25.274	0	288	97	1.4482387	0.056898713	1.4482387	294.1641	0	11.55719						155	6	2	NaN	NaN	NaN	0.5868	1	7588	7588		26.115	0	1	15215	+		20107	10681	11569	11915	15971	15971					0.027134636892810704
PNKGLARV	8	Unmodified	_PNKGLARV_					0	0	0			REV__nc|ENSG00000012061|P07992-3|ERCC1	REV__nc|ENSG00000012061|P07992-3|ERCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.76396918625	2	427.763969	853.513385	1.7768	0.00076005	-3.4932	-0.0014943	-1.7164	-0.00073422	427.7626340011687	13.925	0.095992	13.925	13.901	13.997	0	1500	49	0.71351165	0.029742837	0.71351165	290.4008	0	12.105408						96	5	2	NaN	NaN	NaN	0.72043	1	5442	5442		17.78	0	1	12055	+		20108	13078	11570	11916	15972	15972					0.0807692819979593
PNLQLRRRIIK	11	Unmodified	_PNLQLRRRIIK_					0	0	0			REV__ENSG00000101460|ENST00000360668|MAP1LC3A	REV__ENSG00000101460|ENST00000360668|MAP1LC3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.9569692268501	2	703.956969	1405.89939	1.1645	0.00081972	-4.8572	-0.0034192	-3.6927	-0.0025995	704.4557389262719	19.587	0.12039	19.573	19.524	19.645	-0.014141	1260	40	0.8615505	0.023953617	0.8600311	348.46515	0	9.688324						118	6	3	NaN	NaN	NaN	0.78074	1	19161	19161		0.11306	0	1	13878	+		20109	8856	11571	11917	15973	15973					0.21267180316067424
PNLTGSLIL	9	Unmodified	_PNLTGSLIL_					0	0	0			REV__ENST00000467511.1_1_9:72346973-72349163:-|nuORF	REV__ENST00000467511.1_1_9:72346973-72349163:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.5509589813001	1	927.550959	926.543683	1.7501	0.0016233	-0.098289	-9.1168E-05	1.6518	0.0015321	927.5509977100419	27.567	0.048252	27.567	27.567	27.615	0	255	70	1.4678029	0.0408895	1.4678029	298.33154	0	8.310791						112	3	3	NaN	NaN	NaN	0.21199	1	6529	6529		24.562	1.2276	1	11023	+		20110	11063	11572	11918	15974	15974					0.07747242074333371
PNLTGSLIL	9	Unmodified						0	0	0			REV__ENST00000467511.1_1_9:72346973-72349163:-|nuORF	REV__ENST00000467511.1_1_9:72346973-72349163:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	927.550959	926.543683	1.7501	0.0016233	-0.098289	-9.1168E-05	1.6518	0.0015321	927.5509977100419	27.567	0.048252	27.567	27.567	27.615	0	255	70	1.4678029	0.0408895	1.4678029	298.33154		8.310791	-0.0068858	-0.0010623	0.00075972	NaN	24.562	112	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11023	+		20111	11063	11572	11918							0.07747242074333371
PNNELEKR	8	Unmodified	_PNNELEKR_					0	0	0			REV__ENSG00000184949|ENST00000535113|FAM227A	REV__ENSG00000184949|ENST00000535113|FAM227A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.26453029225	2	500.26453	998.514508	1.6776	0.00083922	2.1039	0.0010525	3.7814	0.0018917	500.2663785777951	28.46	0.096539	28.46	28.388	28.484	0	1296	55	0.8394264	0.033218563	0.8394264	340.86252	0	13.488922						112	5	2	NaN	NaN	NaN	0.84512	1	8527	8527		2.4615	0.28518	1	8013.2	+		20112	10941	11573	11919	15975	15975					0.015190977780434878
PNRLDIIVP	9	Unmodified	_PNRLDIIVP_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8111163441	2	518.811116	1035.60768	1.7819	0.00092447	-2.8236	-0.0014649	-1.0417	-0.00054044	518.8097987682073	36.181	0.024113	36.181	36.157	36.181	0	1230	28	0.8799654	0.016565382	0.8799654	357.15005	0	6.7233276						33	2	2	NaN	NaN	NaN	0.62619	1	10040	10040		4.4131	0	1	2077.3	+		20113	9192	11574	11920	15976	15976					0.09130022231261137
PNRLDIIVP	9	Unmodified						0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.811116	1035.60768	1.7819	0.00092447	-2.8236	-0.0014649	-1.0417	-0.00054044	518.8097987682073	36.181	0.024113	36.181	36.157	36.181	0	1230	28	0.8799654	0.016565382	0.8799654	357.15005		6.7233276	-0.1807	0.00060407	-0.0038403	NaN	4.4131	33	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2077.3	+		20114	9192	11574	11920							0.09130022231261137
PNTDYIQLL	9	Unmodified	_PNTDYIQLL_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5622519491	1	1076.56225	1075.55498	1.5022	0.0016172	-0.67497	-0.00072664	0.82725	0.00089059	1076.5606133073586	26.963	0.12069	26.952	26.928	27.049	-0.010645	96	64	1.5617468	0.037132382	1.5602274	316.78104	0	7.53183						149	6	2	NaN	NaN	NaN	0.032689	1	11487	11487		55.592	0.17858	1	10423			20115	5186	11575	11921	15977	15977					0.020220193778186513
PNTDYIQLL	9	Unmodified						0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1076.56225	1075.55498	1.24	0.0013349	0.098424	0.00010596	1.3384	0.0014409	1076.5629233010186	26.964	0.19303	26.964	26.891	27.084	0	99	73	1.5599792	0.042443752	1.5599792	316.4225		8.609192	0.0057282	0.00048166	-0.0001241	NaN	55.592	175	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12318			20116	5186	11575	11921							0.020220193778186513
PNTSFPQPL	9	Unmodified	_PNTSFPQPL_					0	0	0		ENST00000360066.6_2_1:205501150-205501621:+|nuORF	ENST00000360066.6_2_1:205501150-205501621:+|nuORF	ENST00000360066.6_2_1:205501150-205501621:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5098224481002	1	1000.50982	999.502546	1.5422	0.001543	5.7841	0.005787	7.3263	0.00733	1000.5160283645803	39.789	0.072346	39.794	39.77	39.842	0.0053368	234	52	1.4802408	0.030193806	1.4787214	300.5378	0	6.13031						92	4	2	NaN	NaN	NaN	0.33629	1	8388	8388		16.584	3.9963	1	7906			20117	6595	11576	11922	15978	15978					0.002774810348682877
PNTYPQHQL	9	Unmodified	_PNTYPQHQL_					0	0	0			REV__ENST00000323853.9_1_2:96949314-96949620:-|nuORF	REV__ENST00000323853.9_1_2:96949314-96949620:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.51732903843333	3	366.517329	1096.53016	1.8791	0.00068874	-2.9557	-0.0010833	-1.0765	-0.00039457	366.5161010995602	13.445	0.096023	13.445	13.397	13.493	0	1494	34	0.7172283	0.020438194	0.7172283	436.32697	0	12.433624						71	5	2	NaN	NaN	NaN	0.66529	1	12688	12688		1.04	0.32392	1	6338.3	+		20118	11728	11577	11923	15979	15979					-0.01424615704900134
PNYSESLL	8	Unmodified	_PNYSESLL_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4516388672001	1	922.451639	921.444362	1.8275	0.0016858	-3.6136	-0.0033334	-1.7861	-0.0016475	922.4493765794919	26.07	0.096535	26.059	26.035	26.131	-0.011137	315	55	1.4322147	0.03207016	1.4306953	291.12186	0	6.518799						174	5	4	NaN	NaN	NaN	0.7718	1	6308	6308		13.003	0	1	13633	+		20119	10685	11578	11924	15980	15980					-0.019502006104175962
PNYSESLL	8	Unmodified						0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	922.451639	921.444362	2.1533	0.0019863	-2.3306	-0.0021499	-0.17736	-0.00016361	922.4491189559106	26.07	0.072418	26.07	26.046	26.119	0	318	61	1.4304334	0.035626054	1.4304334	290.75977		7.241577	0.005674	0.00042906	-0.00013098	NaN	13.003	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9912.3	+		20120	10685	11578	11924							-0.019502006104175962
PNYSESLL	8	Unmodified						0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	922.451639	921.444362	1.8275	0.0016858	-3.6136	-0.0033334	-1.7861	-0.0016475	922.4493765794919	26.07	0.096535	26.059	26.035	26.131	-0.011137	315	55	1.4322147	0.03207016	1.4306953	291.12186		6.518799	-0.005674	-0.00075439	0.00013098	NaN	13.003	174	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13633	+		20121	10685	11578	11924							-0.019502006104175962
PPAACAAA	8	Unmodified	_PPAACAAA_					0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3181222736999	1	671.318122	670.310846	1.1148	0.00074839	-3.3467	-0.0022467	-2.2319	-0.0014983	671.3159419916725	32.273	0.048252	32.273	32.225	32.273	0	741	46	1.1773466	0.027125955	1.1773466	240.6313	0	5.5441437						62	3	2	NaN	NaN	NaN	0.84876	1	2597	2597		0.39566	0	1	5502.9	+		20122	11160	11579	11925	15981	15981					-0.03749718197138918
PPAACAAA	8	Unmodified						0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	671.318122	670.310846	1.1148	0.00074839	-3.3467	-0.0022467	-2.2319	-0.0014983	671.3159419916725	32.273	0.048252	32.273	32.225	32.273	0	741	46	1.1773466	0.027125955	1.1773466	240.6313		5.5441437	0.014498	0.00014196	-0.00014448	NaN	0.39566	62	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5502.9	+		20123	11160	11579	11925							-0.03749718197138918
PPAACAAA	8	Unmodified						0	0	0			REV__ENSG00000197766|ENST00000327726|CFD	REV__ENSG00000197766|ENST00000327726|CFD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	671.318122	670.310846	1.0526	0.00070662	-3.781	-0.0025382	-2.7284	-0.0018316	671.3155694221053	32.248	0.072395	32.244	32.196	32.268	-0.0037613	738	49	1.179155	0.02893591	1.1776356	241.00092		5.9140625	-0.014498	-0.00014959	0.00014448	NaN	0.39566	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5293.6	+		20124	11160	11579	11925							-0.03749718197138918
PPAAGPEL	8	Unmodified	_PPAAGPEL_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3984810847002	1	751.398481	750.391205	1.2153	0.00091317	5.3686	0.004034	6.5839	0.0049471	751.4028488546517	32.08	0.21715	32.08	32.032	32.249	0	525	88	1.3070582	0.052069306	1.3070582	266.57144	0	10.619415						352	10	3	NaN	NaN	NaN	0.80071	1	4060	4060		9.1232	0	1	44530	+		20125	9115	11580	11926	15982	15982					0.00602466397583612
PPAAGPEL	8	Unmodified						0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.398481	750.391205	1.2153	0.00091317	5.3686	0.004034	6.5839	0.0049471	751.4028488546517	32.08	0.21715	32.08	32.032	32.249	0	525	88	1.3070582	0.052069306	1.3070582	266.57144		10.619415	0.014492	0.00010575	0.0016571	NaN	9.1232	352	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44530	+		20126	9115	11580	11926							0.00602466397583612
PPAASEGL	8	Unmodified	_PPAASEGL_					0	0	0		ENST00000586463.5_1_19:33134244-33135261:-|nuORF;ENST00000306065.8_1_19:33134244-33135261:-|nuORF;ENST00000593232.5_1_19:33134244-33134586:-|nuORF	ENST00000586463.5_1_19:33134244-33135261:-|nuORF	ENST00000586463.5_1_19:33134244-33135261:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3777456426002	1	741.377746	740.370469	1.517	0.0011247	6.4388	0.0047735	7.9557	0.0058982	741.3828206728723	24.743	0.14474	24.731	24.707	24.851	-0.012394	552	52	1.2908988	0.030539632	1.2893794	263.3397	0	6.230011						111	7	2	NaN	NaN	NaN	0.79379	1	3843	3843		10.052	0	1	10518			20127	6426	11581	11927	15983	15983					-0.010101239820755836
PPAASEGL	8	Unmodified						0	0	0		ENST00000586463.5_1_19:33134244-33135261:-|nuORF;ENST00000306065.8_1_19:33134244-33135261:-|nuORF;ENST00000593232.5_1_19:33134244-33134586:-|nuORF	ENST00000586463.5_1_19:33134244-33135261:-|nuORF	ENST00000586463.5_1_19:33134244-33135261:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.377746	740.370469	1.3319	0.00098747	5.1524	0.0038199	6.4844	0.0048074	741.3812225780321	24.743	0.16891	24.743	24.695	24.864	0	555	52	1.2891023	0.030539632	1.2891023	262.97324		6.2299805	0.0062585	-0.00058564	-0.00013851	NaN	10.052	149	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12805			20128	6426	11581	11927							-0.010101239820755836
PPADGAAA	8	Unmodified	_PPADGAAA_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515	2	335.163754	668.312954	0.92147	0.00030885	6.2965	0.0021104	7.218	0.0024192	335.1661125362652	42.48	0.16779	42.49	42.442	42.61	0.0097351	1530	61	0.6949163	0.037202835	0.69339687	284.06848	0	15.207794						197	8	2	NaN	NaN	NaN	0.84727	1	2453	2453		1.2418	0	1	29341	+		20129	10980	11582	11928	15984	15984					-0.03446966187664202
PPADGAAA	8	Unmodified						0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	1.2687	0.00042523	6.6726	0.0022364	7.9414	0.0026617	335.1662803311569	42.482	0.16771	42.482	42.434	42.602	0	1536	49	0.69119483	0.029771924	0.69119483	282.5472		12.170197	-0.0039355	0.00010594	-0.001101	NaN	1.2418	187	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28793	+		20130	10980	11582	11928							-0.03446966187664202
PPADGAAA	8	Unmodified						0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	335.163754	668.312954	0.92147	0.00030885	6.2965	0.0021104	7.218	0.0024192	335.1661125362652	42.48	0.16779	42.49	42.442	42.61	0.0097351	1530	61	0.6949163	0.037202835	0.69339687	284.06848		15.207794	0.0039355	-0.00014619	0.001101	NaN	1.2418	197	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29341	+		20131	10980	11582	11928							-0.03446966187664202
PPAGALLP	8	Unmodified	_PPAGALLP_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.4399519689001	1	735.439952	734.432676	1.2739	0.00093689	4.8226	0.0035468	6.0966	0.0044837	735.4426023209018	35.288	0.096603	35.287	35.263	35.36	-4.5776E-05	582	52	1.2729256	0.030575633	1.2714062	259.7114	0	6.2382507						90	5	2	NaN	NaN	NaN	0.83849	1	3751	3751		4.0537	0	1	5928.3			20132	5276	11583	11929	15985	15985					0.05483647156904681
PPAGAQLS	8	Unmodified	_PPAGAQLS_					0	0	0			REV__ENST00000552014.5_1_12:113737449-113737581:-|nuORF	REV__ENST00000552014.5_1_12:113737449-113737581:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.3937300578001	1	740.39373	739.386454	1.2602	0.00093306	6.0312	0.0044655	7.2914	0.0053985	740.3980525613841	27.663	0.16888	27.653	27.605	27.774	-0.009552	546	88	1.294491	0.05210817	1.2929716	264.07892	0	10.630188						272	8	3	NaN	NaN	NaN	0.75561	1	3826	3826		15.175	0	1	34122	+		20133	12746	11584	11930	15986	15986					0.0063358225481806585
PPAGPPEA	8	Unmodified	_PPAGPPEA_					0	0	0			REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.3671809563	1	735.367181	734.359904	1.8132	0.0013334	-10.853	-0.0079808	-9.0396	-0.0066474	735.3598460141587	21.729	0.12035	21.715	21.691	21.812	-0.013897	609	49	1.2567334	0.028796911	1.255214	256.4083	0	5.8753815						82	6	2	NaN	NaN	NaN	0.82332	1	3741	3741		6.0903	0.62448	1	6023.8	+		20134	8941	11585	11931	15987	15987					-0.017901066365311635
PPAGPPEA	8	Unmodified						0	0	0			REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	735.367181	734.359904	1.6198	0.0011911	-11.653	-0.0085691	-10.033	-0.007378	735.3584396378063	21.754	0.096312	21.754	21.705	21.802	0	609	43	1.2567334	0.025197268	1.2567334	256.4083		5.1409607	0.019046	-0.0002367	0.00075972	NaN	6.0903	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4861.6	+		20135	8941	11585	11931							-0.017901066365311635
PPAGPPEA	8	Unmodified						0	0	0			REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	REV__nc|ENSG00000104888|Q9P2U7-2|SLC17A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	735.367181	734.359904	1.8132	0.0013334	-10.853	-0.0079808	-9.0396	-0.0066474	735.3598460141587	21.729	0.12035	21.715	21.691	21.812	-0.013897	609	49	1.2567334	0.028796911	1.255214	256.4083		5.8753815	-0.019046	0.00035161	-0.00075972	NaN	6.0903	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6023.8	+		20136	8941	11585	11931							-0.017901066365311635
PPAGPSNV	8	Unmodified	_PPAGPSNV_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3780799936001	1	738.37808	737.370804	1.4259	0.0010529	1.9797	0.0014617	3.4056	0.0025146	738.3796251590751	30.993	0.096546	30.988	30.94	31.036	-0.0050716	567	76	1.2819146	0.044964075	1.2803952	261.5263	0	9.173218						138	5	2	NaN	NaN	NaN	0.84455	1	3803	3803		2.7852	0.60885	1	10287			20137	930	11586	11932	15988	15988					-0.00838704262241663
PPAPAQGCGR	10	Unmodified	_PPAPAQGCGR_					0	0	0		ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.23471860780006	2	477.234719	952.454884	1.0933	0.00052178	1.5227	0.00072668	2.616	0.0012485	477.235870289306	31.983	0.072422	31.983	31.959	32.032	0	1425	31	0.7599118	0.01853484	0.7599118	308.77704	0	7.5313416						51	4	2	NaN	NaN	NaN	0.76548	1	7144	7144		3.5698	0.78459	1	4655.2			20138	7471	11587	11933	15989	15989					-0.023244964369723675
PPAPAQGCGR	10	Unmodified						0	0	0		ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	ENST00000536178.3_1_7:101944355-101950044:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	477.234719	952.454884	0.99952	0.00047701	1.0339	0.00049339	2.0334	0.0009704	477.2347757251585	31.982	0.048273	31.979	31.954	32.003	-0.0037594	1422	31	0.7617651	0.01853484	0.7602457	309.53012		7.5313416	-0.0024234	-0.00020584	0.00016698	NaN	3.5698	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4172			20139	7471	11587	11933							-0.023244964369723675
PPAPFMHI	8	Unmodified	_PPAPFMHI_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.23619866425	2	455.236199	908.457844	1.4958	0.00068096	-1.3688	-0.0006231	0.12709	5.7856E-05	455.2359346116355	25.926	0.096542	25.926	25.901	25.998	0	1335	58	0.8154261	0.035119116	0.8154261	331.56253	0	14.279877						84	5	2	NaN	NaN	NaN	0.30174	1	6207	6207		41.978	17.077	1	6819.3			20140	3436	11588	11934	15990	15990					-4.6213121777327615E-05
PPAPNSSS	8	Unmodified	_PPAPNSSS_					0	0	0			REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3522591736	1	756.352259	755.344983	1.3146	0.00099429	4.9711	0.0037599	6.2857	0.0047542	756.3561262722676	27.711	0.19304	27.702	27.653	27.846	-0.009552	579	52	1.2747238	0.030559182	1.2732043	259.94632	0	6.2317505						145	9	2	NaN	NaN	NaN	0.84207	1	4082	4082		3.5732	1.9029	1	13081	+		20141	8248	11589	11935	15991	15991					-0.0424759850452574
PPAPNSSS	8	Unmodified						0	0	0			REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.352259	755.344983	1.5243	0.0011529	4.7034	0.0035574	6.2277	0.0047103	756.3559069796362	27.712	0.12065	27.712	27.664	27.784	0	573	49	1.2783196	0.028766274	1.2783196	260.6796		5.8661194	0.0051757	-8.9273E-05	0.0025576	NaN	3.5732	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10196	+		20142	8248	11589	11935							-0.0424759850452574
PPAPNSSS	8	Unmodified						0	0	0			REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	REV__COL5A1|p.N385S|1|0.55|ENSG00000130635|chr9:134730465-134730465|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	756.352259	755.344983	1.3146	0.00099429	4.9711	0.0037599	6.2857	0.0047542	756.3561262722676	27.711	0.19304	27.702	27.653	27.846	-0.009552	579	52	1.2747238	0.030559182	1.2732043	259.94632		6.2317505	-0.0051757	0.00011323	-0.0025576	NaN	3.5732	145	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13081	+		20143	8248	11589	11935							-0.0424759850452574
PPATTHIW	8	Unmodified	_PPATTHIW_					0	0	0			REV__ENST00000277540.6_1_9:140470535-140471924:-|nuORF	REV__ENST00000277540.6_1_9:140470535-140471924:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4781283892002	1	922.478128	921.470852	1.2863	0.0011866	1.3652	0.0012594	2.6516	0.002446	922.4791767294082	24.96	0.096512	24.948	24.924	25.02	-0.012394	351	67	1.4108255	0.03925121	1.409306	286.774	0	7.9784546						117	5	2	NaN	NaN	NaN	0.82332	1	6314	6314		6.0903	0	1	13792	+		20144	11598	11590	11936	15992	15992					0.006975330715704331
PPCAAAPE	8	Unmodified	_PPCAAAPE_					0	0	0		ENST00000204726.7_3_12:133349592-133349694:-|nuORF	ENST00000204726.7_3_12:133349592-133349694:-|nuORF	ENST00000204726.7_3_12:133349592-133349694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3392516463	1	755.339252	754.331975	-0.17494	-0.00013214	-0.90866	-0.00068634	-1.0836	-0.00081848	755.3376503839838	55.026	0.071976	55.025	55.001	55.073	-0.0006218	438	58	1.359022	0.033998013	1.3575026	277.14337	0	6.933197						104	4	2	NaN	NaN	NaN	0.84692	1	4057	4057		1.4396	0	1	12634			20145	6224	11591	11937	15993	15993					-0.055017528882672195
PPCPGGGG	8	Unmodified	_PPCPGGGG_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|26|2|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2711720811002	1	641.271172	640.263896	1.5184	0.0009737	8.033	0.0051513	9.5514	0.006125	641.2764982089938	32.49	0.072399	32.49	32.466	32.539	0	747	52	1.1737292	0.030752778	1.1737292	240.11693	0	6.29126						95	4	2	NaN	NaN	NaN	0.84945	1	1735	1735		0	0	1	7279.4			20146	13697	11592	11938	15994	15994					-0.07062577748251897
PPCPGGGG	8	Unmodified						0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|26|2|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|6|1|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	641.271172	640.263896	1.5288	0.00098035	9.1864	0.005891	10.715	0.0068713	641.2752915938775	32.489	0.14478	32.486	32.462	32.607	-0.0031013	744	52	1.1755381	0.030746102	1.1740186	240.48695		6.289917	-0.0021119	0.00039624	0.00014467	NaN	0	136	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10411			20147	13697	11592	11938							-0.07062577748251897
PPCSAAPR	8	Unmodified	_PPCSAAPR_					0	0	0		ENST00000397166.6_1_8:38089123-38090580:+|nuORF	ENST00000397166.6_1_8:38089123-38090580:+|nuORF	ENST00000397166.6_1_8:38089123-38090580:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.69998033344996	2	399.69998	797.385408	1.3517	0.00054027	-5.0712	-0.002027	-3.7195	-0.0014867	399.69861009783034	13.421	0.071982	13.411	13.411	13.483	-0.010098	1494	37	0.7172283	0.022295058	0.71570885	292.23822	0	9.0842285						70	4	2	NaN	NaN	NaN	0.74229	1	4631	4631		16.417	0	1	7190.7			20148	6803	11593	11939	15995	15995					-0.021389553857488863
PPDRELSRAR	10	Unmodified	_PPDRELSRAR_					0	0	0		ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.82836035705	2	598.82836	1195.64217	1.7391	0.0010414	-7.6297	-0.0045689	-5.8907	-0.0035275	598.8229964125593	23.441	0.21698	23.441	23.417	23.634	0	1179	61	0.9112251	0.03674233	0.9112251	369.18726	0	14.886353						353	10	4	NaN	NaN	NaN	0.56921	1	16339	16339		16.584	2.1591	1	88381			20149	6311	11594	11940	15996	15996					0.05217238372074462
PPDRELSRAR	10	Unmodified						0	0	0		ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	ENST00000262622.4_1_19:34175671-34262890:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.82836	1195.64217	1.5941	0.00095458	-7.2517	-0.0043425	-5.6576	-0.0033879	598.8236217499001	23.489	0.24118	23.476	23.427	23.668	-0.013294	1179	64	0.9112251	0.038573205	0.90970564	369.18726		15.628113	0.017263	0.00017413	-0.00075972	NaN	16.584	392	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87898			20150	6311	11594	11940							0.05217238372074462
PPDSAGPGPA	10	Unmodified	_PPDSAGPGPA_					0	0	0		nc|ENSG00000126562|Q96J92-3|WNK4;ENSG00000126562|ENST00000246914|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.2061497461	2	433.20615	864.397747	0.77568	0.00033603	3.8371	0.0016622	4.6127	0.0019983	433.2077935653909	30.68	0.072378	30.68	30.656	30.728	0	1482	34	0.72465914	0.020431578	0.72465914	294.8791	0	8.314026						87	4	3	NaN	NaN	NaN	0.76892	1	5581	5581		3.2116	0.058268	1	9986.5			20151	2508	11595	11941	15997	15997					-0.039876404417100275
PPEALDCV	8	Unmodified	_PPEALDCV_					0	0	0			REV__ENST00000374710.7_1_9:108210409-108226598:+|nuORF	REV__ENST00000374710.7_1_9:108210409-108226598:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.1994788069499	2	422.199479	842.384405	0.66888	0.0002824	-2.0826	-0.00087926	-1.4137	-0.00059686	422.19821775160665	31.332	0.048252	31.332	31.308	31.356	0	1392	34	0.780288	0.020365238	0.780288	317.64526	0	8.290405						49	3	2	NaN	NaN	NaN	0.84887	1	5295	5295		0.32989	0	1	4720.3	+		20152	11932	11596	11942	15998	15998					-0.04309214545321538
PPEDNDDRQ	9	Unmodified	_PPEDNDDRQ_					0	0	0		ENST00000526183.5_1_8:145725999-145727283:+|nuORF;ENSG00000160972|ENST00000435887|PPP1R16A	ENST00000526183.5_1_8:145725999-145727283:+|nuORF	ENST00000526183.5_1_8:145725999-145727283:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2283417512	2	543.228342	1084.44213	0.67687	0.00036769	8.7263	0.0047404	9.4031	0.0051081	543.7337703210624	35.41	0.096481	35.41	35.385	35.482	0	1266	49	0.85786515	0.029489279	0.85786515	347.97446	0	11.96167						156	5	4	NaN	NaN	NaN	0.54912	1	12143	12143		7.5876	2.6779	1	14189			20153	4086	11597	11943	15999	15999					-0.09671281086184536
PPEEISTGTQS	11	Unmodified	_PPEEISTGTQS_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.26967524965	2	573.269675	1144.5248	1.3052	0.00074822	3.8903	0.0022302	5.1955	0.0029784	573.2718172747882	22.693	0.12059	22.68	22.559	22.68	-0.01354	1245	46	0.87076044	0.027626812	0.869241	352.97247	0	11.198822						72	6	2	NaN	NaN	NaN	0.69801	1	14124	14124		7.5876	0.60324	1	6819.9			20154	5474	11598	11944	16000	16000					-0.04168384078047893
PPEGGGAG	8	Unmodified	_PPEGGGAG_					0	0	0			REV__nc|ENSG00000167716|Q562E7-4|WDR81	REV__nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2889306353001	1	641.288931	640.281654	0.99854	0.00064036	-8.7388	-0.0056041	-7.7403	-0.0049638	641.2833793737238	31.428	0.12066	31.428	31.404	31.525	0	1137	43	0.9369253	0.02568084	0.9369253	191.67245	0	5.2536774						117	6	2	NaN	NaN	NaN	0.84692	1	1736	1736		1.4396	0	1	12431	+		20155	10476	11599	11945	16001	16001					-0.05287539221751558
PPEGGGAG	8	Unmodified						0	0	0			REV__nc|ENSG00000167716|Q562E7-4|WDR81	REV__nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	641.288931	640.281654	0.99854	0.00064036	-8.7388	-0.0056041	-7.7403	-0.0049638	641.2833793737238	31.428	0.12066	31.428	31.404	31.525	0	1137	43	0.9369253	0.02568084	0.9369253	191.67245		5.2536774	0	0	0	NaN	1.4396	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12431	+		20156	10476	11599	11945							-0.05287539221751558
PPELGAGK	8	Unmodified	_PPELGAGK_					0	0	0		ENST00000394951.5_1_16:31123619-31123802:+|nuORF	ENST00000394951.5_1_16:31123619-31123802:+|nuORF	ENST00000394951.5_1_16:31123619-31123802:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.4250301862	1	768.42503	767.417754	1.3328	0.0010242	-4.5686	-0.0035106	-3.2358	-0.0024865	768.4208654432213	37.142	0.09639	37.145	37.096	37.193	0.0022507	585	43	1.2711272	0.025178552	1.2696078	259.1402	0	5.1330566						89	5	2	NaN	NaN	NaN	0.84727	1	4250	4250		1.2418	0	1	8859.4			20157	6780	11600	11946	16002	16002					0.02474155288905422
PPELITLF	8	Unmodified	_PPELITLF_					0	0	0		ENST00000556668.1_1_14:75473249-75475888:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000556668.1_1_14:75473249-75475888:+|nuORF	ENST00000556668.1_1_14:75473249-75475888:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.5342462846002	1	929.534246	928.52697	1.316	0.0012233	0.13473	0.00012524	1.4507	0.0013485	929.5355734224171	39.716	0.072395	39.722	39.697	39.77	0.0053368	297	37	1.4428991	0.021361947	1.4413797	293.26068	0	4.3417053						66	4	2	NaN	NaN	NaN	0.65075	1	6433	6433		22.126	0	1	5065.1			20158	2228	11601	11947	16003	16003					0.05984741188387943
PPEQQWVREHR	11	Unmodified	_PPEQQWVREHR_					0	0	0			REV__ENST00000369754.7_2_6:82462281-82462392:-|nuORF	REV__ENST00000369754.7_2_6:82462281-82462392:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.9163745978667	3	487.916375	1460.72729	1.979	0.00096557	-0.81223	-0.0003963	1.1667	0.00056926	488.24983427330733	23.441	0.072426	23.441	23.417	23.489	0	1362	37	0.79879075	0.02219367	0.79879075	484.44135	0	13.459778						97	4	3	NaN	NaN	NaN	0.71564	1	20436	20436		2.789	0	1	13752	+		20159	11878	11602	11948	16004	16004					0.015359838379026769
PPEVDNGSGSL	11	Unmodified	_PPEVDNGSGSL_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2512855312501	2	536.251286	1070.48802	2.1049	0.0011288	-4.8224	-0.002586	-2.7175	-0.0014572	536.2491508243711	28.098	0.21721	28.098	28.05	28.267	0	1266	70	0.85786515	0.04237485	0.85786515	348.0314	0	17.191254						337	10	4	NaN	NaN	NaN	0.63477	1	11569	11569		11.739	0.19041	1	48892	+		20160	10753	11603	11949	16005	16005					-0.04440635903938528
PPEVDNGSGSL	11	Unmodified						0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.251286	1070.48802	2.1049	0.0011288	-4.8224	-0.002586	-2.7175	-0.0014572	536.2491508243711	28.098	0.21721	28.098	28.05	28.267	0	1266	70	0.85786515	0.04237485	0.85786515	348.0314		17.191254	-0.019279	-0.00040712	0.00075972	NaN	11.739	337	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48892	+		20161	10753	11603	11949							-0.04440635903938528
PPEVDNGSGSL	11	Unmodified						0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.251286	1070.48802	0.83019	0.00044519	-3.8512	-0.0020652	-3.021	-0.00162	536.2495354899005	28.145	0.16897	28.137	28.064	28.233	-0.0089798	1266	76	0.85786515	0.046069622	0.8563457	348.0314		18.690186	0.019279	0.00063452	-0.00075972	NaN	11.739	282	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40063	+		20162	10753	11603	11949							-0.04440635903938528
PPFDERVK	8	Unmodified	_PPFDERVK_					0	0	0			REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5258068633001	1	987.525807	986.51853	1.909	0.0018852	-4.4521	-0.0043965	-2.5431	-0.0025114	987.5220313292303	34.421	0.1447	34.421	34.372	34.517	0	198	67	1.5015416	0.039039016	1.5015416	304.9172	0	7.9276123						136	7	2	NaN	NaN	NaN	0.80071	1	8101	8101		9.1232	0.16122	1	10314	+		20163	12753	11604	11950	16006	16006					0.024731872717552505
PPGAAAGPF	9	Unmodified	_PPGAAAGPF_					0	0	0		ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.3988154357	1	784.398815	783.391539	1.0155	0.00079653	4.7899	0.0037572	5.8053	0.0045537	784.402563524979	32.224	0.21719	32.22	32.148	32.365	-0.0037613	552	103	1.2908988	0.0610435	1.2893794	263.07663	0	12.440247						293	10	3	NaN	NaN	NaN	0.58547	1	4455	4455		6.0903	0.62448	1	32334			20164	5983	11605	11951	16007	16007					-0.008821138825737762
PPGAAAGPF	9	Unmodified						0	0	0		ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	784.398815	783.391539	1.4502	0.0011376	6.0067	0.0047116	7.4569	0.0058492	784.4035860385063	32.225	0.26546	32.225	32.152	32.418	0	552	61	1.2908988	0.035927057	1.2908988	263.07663		7.3217163	0.0024428	0.00041687	0.00075972	NaN	6.0903	271	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31954			20165	5983	11605	11951							-0.008821138825737762
PPGAAGKG	8	Unmodified	_PPGAAGKG_					0	0	0			REV__CON__P04258;REV__nc|ENSG00000168542|P02461-2|COL3A1	REV__nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.356950621	1	654.356951	653.349674	0.99305	0.00064981	-10.429	-0.0068245	-9.4363	-0.0061747	654.349652767594	32.756	0.26543	32.756	32.707	32.973	0	699	85	1.2026466	0.050589204	1.2026466	245.92982	0	10.345001						332	12	3	NaN	NaN	NaN	0.84887	1	2151	2151		0.32989	0	1	46551		+	20166	8260;10518	11606	11952	16008	16008					0.00913330428898007
PPGAAGKG	8	Unmodified	_PPGAAGKG_					0	0	0			REV__CON__P04258;REV__nc|ENSG00000168542|P02461-2|COL3A1	REV__nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.356950621	1	654.356951	653.349674	0.56352	0.00036875	-10.106	-0.0066132	-9.5429	-0.0062445	654.350166112701	32.755	0.19302	32.752	32.703	32.896	-0.0031013	696	70	1.2044523	0.04154432	1.2029328	246.29907	0	8.495407						264	9	3	NaN	NaN	NaN	0.84692	1	2066	2066		1.4396	0	1	42545		+	20167	8260;10518	11606	11952	16009	16009					0.00913330428898007
PPGAAGKG	8	Unmodified						0	0	0			REV__CON__P04258;REV__nc|ENSG00000168542|P02461-2|COL3A1	REV__nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	654.356951	653.349674	0.99305	0.00064981	-10.429	-0.0068245	-9.4363	-0.0061747	654.349652767594	32.756	0.26543	32.756	32.707	32.973	0	699	85	1.2026466	0.050589204	1.2026466	245.92982		10.345001	0.0020956	-8.2624E-05	-0.00014313	NaN	1.4396	332	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46551		+	20168	8260;10518	11606	11952							0.00913330428898007
PPGAAGKG	8	Unmodified						0	0	0			REV__CON__P04258;REV__nc|ENSG00000168542|P02461-2|COL3A1	REV__nc|ENSG00000168542|P02461-2|COL3A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	654.356951	653.349674	0.56352	0.00036875	-10.106	-0.0066132	-9.5429	-0.0062445	654.350166112701	32.755	0.19302	32.752	32.703	32.896	-0.0031013	696	70	1.2044523	0.04154432	1.2029328	246.29907		8.495407	-0.0020956	0.0001287	0.00014313	NaN	1.4396	264	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42545		+	20169	8260;10518	11606	11952							0.00913330428898007
PPGAALGK	8	Unmodified	_PPGAALGK_					0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.4195508778001	1	710.419551	709.412274	0.86107	0.00061172	-3.647	-0.0025909	-2.7859	-0.0019791	710.416573961405	29.087	0.14479	29.079	29.031	29.175	-0.0077229	681	58	1.2134778	0.034289718	1.2119584	247.7424	0	7.0005646						172	7	3	NaN	NaN	NaN	0.84651	1	3355	3355		1.6704	0	1	28013	+		20170	9672	11607	11953	16010	16010					0.045944764970954566
PPGAALGK	8	Unmodified						0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	710.419551	709.412274	1.0915	0.00077539	-2.3564	-0.0016741	-1.265	-0.00089867	710.4177164111497	29.063	0.14477	29.063	29.039	29.184	0	684	67	1.2116731	0.039714575	1.2116731	247.37395		8.108093	-0.0078101	0.00026207	-0.00014264	NaN	1.6704	202	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32492	+		20171	9672	11607	11953							0.045944764970954566
PPGAALGK	8	Unmodified						0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.419551	709.412274	0.86107	0.00061172	-3.647	-0.0025909	-2.7859	-0.0019791	710.416573961405	29.087	0.14479	29.079	29.031	29.175	-0.0077229	681	58	1.2134778	0.034289718	1.2119584	247.7424		7.0005646	0.0078101	-0.00065475	0.00014264	NaN	1.6704	172	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28013	+		20172	9672	11607	11953							0.045944764970954566
PPGAALVT	8	Unmodified	_PPGAALVT_					0	0	0			REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.4192165268001	1	725.419217	724.41194	0.78908	0.00057242	4.8814	0.003541	5.6704	0.0041134	725.4230997463785	34.035	0.16896	34.035	33.986	34.155	0	540	73	1.2980826	0.043117046	1.2980826	264.91122	0	8.799286						222	8	3	NaN	NaN	NaN	0.82332	1	3678	3678		6.0903	0	1	27948	+		20173	11880	11608	11954	16011	16011					0.03871056777245485
PPGAALVT	8	Unmodified						0	0	0			REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	725.419217	724.41194	0.78908	0.00057242	4.8814	0.003541	5.6704	0.0041134	725.4230997463785	34.035	0.16896	34.035	33.986	34.155	0	540	73	1.2980826	0.043117046	1.2980826	264.91122		8.799286	-0.047056	0.00041936	-0.0028307	NaN	6.0903	222	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27948	+		20174	11880	11608	11954							0.03871056777245485
PPGAALVT	8	Unmodified						0	0	0			REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	REV__ENST00000369816.4_1_6:80657106-80657265:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.419217	724.41194	2.4393	0.0017695	2.4834	0.0018015	4.9228	0.0035711	725.4199163490905	34.13	0.048252	34.129	34.105	34.153	-0.0012474	528	34	1.3052634	0.019742012	1.303744	266.37668		4.0289307	0.047056	-0.0013201	0.0028307	NaN	6.0903	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1758.2	+		20175	11880	11608	11954							0.03871056777245485
PPGAAPLG	8	Unmodified	_PPGAAPLG_					0	0	0		ENSG00000169862|ENST00000304623|CTNND2;nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENST00000509868.1_1_5:11508500-11903965:-|nuORF	ENSG00000169862|ENST00000304623|CTNND2	ENSG00000169862|ENST00000304623|CTNND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3773517121001	1	679.377352	678.370075	0.8175	0.00055539	7.7948	0.0052956	8.6123	0.005851	679.3828295057859	33.262	0.24133	33.262	33.214	33.456	0	756	61	1.1683017	0.036189318	1.1683017	238.72586	0	7.3947754						221	11	3	NaN	NaN	NaN	0.84651	1	2807	2807		1.6704	0	1	28495			20176	4699	11609	11955	16012	16012					0.018025010887186
PPGAAQPQ	8	Unmodified	_PPGAAQPQ_					0	0	0		ENST00000228918.8_1_12:6500251-6500470:+|nuORF	ENST00000228918.8_1_12:6500251-6500470:+|nuORF	ENST00000228918.8_1_12:6500251-6500470:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3889790309	1	765.388979	764.381703	0.57368	0.00043909	-8.2027	-0.0062783	-7.629	-0.0058392	765.3805268510768	55.987	0.024021	55.986	55.986	56.01	-0.00059128	588	43	1.2693287	0.025178552	1.2678093	258.7916	0	5.133423						42	2	2	NaN	NaN	NaN	0.84692	1	4198	4198		1.4396	0	1	3055			20177	6243	11610	11956	16013	16013					-0.009913018879615265
PPGALCGG	8	Unmodified	_PPGALCGG_					0	0	0		ENST00000356396.8_1_21:47635678-47636399:-|nuORF	ENST00000356396.8_1_21:47635678-47636399:-|nuORF	ENST00000356396.8_1_21:47635678-47636399:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3181222737002	1	671.318122	670.310846	1.6389	0.0011003	5.0643	0.0033998	6.7033	0.0045	671.321164016997	36.348	0.072186	36.35	36.302	36.374	0.0016747	765	46	1.1628724	0.02715218	1.161353	237.67296	0	5.5494843						75	4	2	NaN	NaN	NaN	0.84876	1	2519	2519		0.39566	0	1	7216.7			20178	6571	11611	11957	16014	16014					-0.03749718197116181
PPGALRAT	8	Unmodified	_PPGALRAT_					0	0	0		MXRA8|p.R301Gfs*107|1|0.3|ENSG00000162576|chr1:1354730-1354730|G/-|frameshift_variant	MXRA8|p.R301Gfs*107|1|0.3|ENSG00000162576|chr1:1354730-1354730|G/-|frameshift_variant	MXRA8|p.R301Gfs*107|1|0.3|ENSG00000162576|chr1:1354730-1354730|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4519136386999	1	782.451914	781.444637	1.4196	0.0011108	-10.586	-0.008283	-9.1664	-0.0071723	782.443297859209	32.128	0.14479	32.128	32.08	32.225	0	486	76	1.3303722	0.04482031	1.3303722	271.13275	0	9.13446						218	7	3	NaN	NaN	NaN	0.77489	1	4510	4510		12.588	0	1	36889			20179	7887	11612	11958	16015	16015					0.04517263900072521
PPGAPAEL	8	Unmodified	_PPGAPAEL_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3984810846999	1	751.398481	750.391205	0.95981	0.0007212	5.0928	0.0038267	6.0526	0.0045479	751.4026835756121	32.055	0.16893	32.051	32.027	32.196	-0.0037613	528	118	1.3052634	0.07003915	1.303744	266.2054	0	14.284302						344	8	3	NaN	NaN	NaN	0.80071	1	3986	3986		9.1232	0	1	46029			20180	905	11613	11959	16016	16016					0.006024663975608746
PPGARGPG	8	Unmodified	_PPGARGPG_					0	0	0			REV__ENST00000471660.5_1_3:87276529-87276667:+|nuORF	REV__ENST00000471660.5_1_3:87276529-87276667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486956002	1	708.378749	707.371472	0.89479	0.00063385	-7.4914	-0.0053067	-6.5966	-0.0046729	708.3734326700228	37.29	0.2887	37.29	37.193	37.482	0	732	106	1.1827712	0.06327367	1.1827712	241.48659	0	12.91861						722	13	4	NaN	NaN	NaN	0.84692	1	3370	3370		1.4396	0	1	140690	+		20181	12326	11614	11960	16017	16017					0.006081351774810173
PPGARGPG	8	Unmodified						0	0	0			REV__ENST00000471660.5_1_3:87276529-87276667:+|nuORF	REV__ENST00000471660.5_1_3:87276529-87276667:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.89479	0.00063385	-7.4914	-0.0053067	-6.5966	-0.0046729	708.3734326700228	37.29	0.2887	37.29	37.193	37.482	0	732	106	1.1827712	0.06327367	1.1827712	241.48659		12.91861	0.00019158	-0.00038704	-0.00014419	NaN	1.4396	722	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140690	+		20182	12326	11614	11960							0.006081351774810173
PPGGAGPP	8	Unmodified	_PPGGAGPP_					0	0	0		ENSG00000104899|ENST00000221496|AMH	REV__CON__P04258	REV__CON__P04258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3304015195	1	649.330402	648.323125	1.6999	0.0011038	-8.8332	-0.0057356	-7.1333	-0.0046319	649.3233246280473	55.1	0.12048	55.1	55.052	55.172	0	732	79	1.1827712	0.0470109	1.1827712	241.90393	0	9.614807						173	6	2	NaN	NaN	NaN	0.84876	1	2010	2010		0.39566	0	1	21112		+	20183	8260	11615	11961	16018	16018					-0.01510358462428485
PPGGAGPP	8	Unmodified						0	0	0		ENSG00000104899|ENST00000221496|AMH	REV__CON__P04258	REV__CON__P04258	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	649.330402	648.323125	-0.36167	-0.00023484	-8.0179	-0.0052063	-8.3796	-0.0054411	649.3242012502952	55.098	0.1201	55.097	55.073	55.193	-0.0006218	732	55	1.1827712	0.032542586	1.1812518	241.90393		6.6556854	-0.0012575	0.0002733	-0.00075972	NaN	0.39566	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9510.8		+	20184	8260	11615	11961							-0.01510358462428485
PPGGGGGGG	9	Unmodified	_PPGGGGGGG_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	306.64044569435003	2	306.640446	611.266338	0.83702	0.00025666	5.4987	0.0016861	6.3357	0.0019428	306.6427062192756	38.155	0.19221	38.155	38.059	38.251	0	1536	73	0.69119483	0.0446676	0.69119483	283.07385	0	18.293304						171	9	2	NaN	NaN	NaN	0.6907	1	859	859		0	0	1	10791			20185	3085	11616	11962	16019	16019					-0.05484406018945265
PPGGGGGGG	9	Unmodified	_PPGGGGGGG_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	306.64044569435003	2	306.640446	611.266338	1.5134	0.00046407	3.299	0.0010116	4.8123	0.0014757	306.6419678152719	39.692	0.12057	39.697	39.673	39.794	0.0053368	1551	157	0.6818875	0.09670645	0.6803681	279.26215	0	39.60544						378	6	2	NaN	NaN	NaN	0.6907	1	816	816		0	0	1	47015			20186	3085	11616	11962	16020	16020					-0.05484406018945265
PPGGGGGGG	9	Unmodified	_PPGGGGGGG_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	306.64044569435003	2	306.640446	611.266338	1.898	0.000582	4.435	0.0013599	6.333	0.0019419	306.642866548288	38.153	0.19229	38.156	38.084	38.276	0.0034256	1533	73	0.6930556	0.0446676	0.6915362	283.83597	0	18.293304						150	9	2	NaN	NaN	NaN	0.6907	1	817	817		0	0	1	9689.9			20187	3085	11616	11962	16021	16021					-0.05484406018945265
PPGGGGGGG	9	Unmodified						0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	306.640446	611.266338	1.086	0.00033301	2.4446	0.00074961	3.5306	0.0010826	306.6418478759487	39.694	0.217	39.694	39.694	39.911	0	1542	163	0.6874725	0.100447774	0.6874725	281.54944		41.137665	-0.0016062	-0.00017767	0.0035522	NaN	0	642	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81546			20188	3085	11616	11962							-0.05484406018945265
PPGGGGGQ	8	Unmodified	_PPGGGGGQ_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.2892649863	1	626.289265	625.281989	2.0942	0.0013116	-7.782	-0.0048738	-5.6878	-0.0035622	626.2857309621492	18.125	0.071926	18.125	18.053	18.125	0	765	43	1.1628724	0.025343299	1.1628724	238.01503	0	5.1872406						80	4	2	NaN	NaN	NaN	0.84876	1	1250	1250		0.39566	0	1	5791.3			20189	4178	11617	11963	16022	16022					-0.04564119501901587
PPGGGGGQ	8	Unmodified	_PPGGGGGQ_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.2892649863	1	626.289265	625.281989	2.1185	0.0013268	-5.8451	-0.0036607	-3.7266	-0.0023339	626.2854950980943	18.173	0.11986	18.173	18.173	18.292	0	762	49	1.1646824	0.028960705	1.1646824	238.38548	0	5.927643						99	6	2	NaN	NaN	NaN	0.84876	1	1251	1251		0.39566	0	1	6858.4			20190	4178	11617	11963	16023	16023					-0.04564119501901587
PPGGGGGQ	8	Unmodified						0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	626.289265	625.281989	2.3672	0.0014826	-5.6637	-0.0035471	-3.2965	-0.0020645	626.2861966375192	18.098	0.048021	18.084	18.036	18.084	-0.013786	768	43	1.1610622	0.02534616	1.1595428	237.64453		5.187805	-0.020394	0.00059186	-0.0016648	NaN	0.39566	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3367.7			20191	4178	11617	11963							-0.04564119501901587
PPGGGGGQ	8	Unmodified						0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	626.289265	625.281989	1.8675	0.0011696	-5.4761	-0.0034297	-3.6087	-0.0022601	626.285724188173	18.146	0.12	18.132	18.132	18.252	-0.013948	759	43	1.1664921	0.025337934	1.1649727	238.7559		5.1861267	-0.020468	0.00010527	0.00014516	NaN	0.39566	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8729			20192	4178	11617	11963							-0.04564119501901587
PPGGGLMG	8	Unmodified	_PPGGGLMG_					0	0	0		nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	nc|ENSG00000136826|O43474-4|KLF4	nc|ENSG00000136826|O43474-4|KLF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.17052440225	2	343.170524	684.326496	1.0176	0.0003492	5.3026	0.0018197	6.3202	0.0021689	343.17195442577656	31.018	0.12072	31.018	30.97	31.091	0	1497	40	0.71537006	0.024159491	0.71537006	292.2927	0	9.871307						133	6	3	NaN	NaN	NaN	0.84876	1	2929	2929		0.39566	0	1	15743			20193	3047	11618	11964	16024	16024					-0.028294316800725028
PPGGGSGG	8	Unmodified	_PPGGGSGG_					0	0	0		ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2627158848002	1	585.262716	584.255439	1.2708	0.00074375	1.3537	0.0007923	2.6245	0.001536	585.2637498016228	20.525	0.12029	20.511	20.463	20.584	-0.014141	1221	67	0.885486	0.040486515	0.88396657	181.51172	0	8.299133						100	6	2	NaN	NaN	NaN	0.84945	1	518	518		0	0	1	16101			20194	4654	11619	11965	16025	16025					-0.05331808393225401
PPGGGVMG	8	Unmodified	_PPGGGVMG_					0	0	0			REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16269937015005	2	336.162699	670.310846	1.2427	0.00041775	5.2904	0.0017784	6.5331	0.0021962	336.1655887887716	41.859	0.14429	41.859	41.786	41.931	0	1521	67	0.70049703	0.04091865	0.70049703	286.3327	0	16.725769						299	7	4	NaN	NaN	NaN	0.84876	1	2598	2598		0.39566	0	1	44623	+		20195	9819	11620	11966	16026	16026					-0.03749718197116181
PPGGGVMG	8	Unmodified						0	0	0			REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	336.162699	670.310846	1.2427	0.00041775	5.2904	0.0017784	6.5331	0.0021962	336.1655887887716	41.859	0.14429	41.859	41.786	41.931	0	1521	67	0.70049703	0.04091865	0.70049703	286.3327		16.725769	0.068822	-0.0011166	-0.0001702	NaN	0.39566	299	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44623	+		20196	9819	11620	11966							-0.03749718197116181
PPGGGVMG	8	Unmodified						0	0	0			REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	REV__SS18|p.G221Rfs*19|1|0.66|ENSG00000141380|chr18:26039404-26039405|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	336.162699	670.310846	1.1188	0.00037611	7.6152	0.0025599	8.734	0.0029361	336.16546522833454	41.713	0.21647	41.721	41.697	41.913	0.0082588	1518	67	0.7023569	0.040914237	0.70083743	287.09293		16.723938	-0.068822	0.00044645	0.0001702	NaN	0.39566	267	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52067	+		20197	9819	11620	11966							-0.03749718197116181
PPGGKIAP	8	Unmodified	_PPGGKIAP_					0	0	0		ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.4352009419999	1	736.435201	735.427924	1.4129	0.0010405	-3.2583	-0.0023995	-1.8453	-0.001359	736.4324055259627	28.025	0.36205	28.016	27.847	28.209	-0.0089779	651	106	1.2315145	0.06313157	1.229995	251.25621	0	12.880264						495	16	4	NaN	NaN	NaN	0.84692	1	3763	3763		1.4396	0	1	120630			20198	6328	11621	11967	16027	16027					0.04962763014123084
PPGLGGNF	8	Unmodified	_PPGLGGNF_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1;ENSG00000164692|ENST00000297268|COL1A2;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.3831653715001	1	758.383165	757.375889	1.4396	0.0010917	6.3645	0.0048267	7.8041	0.0059185	758.387528282677	34.082	0.14487	34.08	34.056	34.201	-0.0012474	552	76	1.2908988	0.044887304	1.2893794	263.23218	0	9.153137						122	7	2	NaN	NaN	NaN	0.84692	1	4108	4108		1.4396	1.0439	1	7078.6			20199	1696	11622	11968	16028	16028					-0.012504003996127722
PPGMKGPA	8	Unmodified	_PPGMKGPA_					0	0	0		CON__P04258	CON__P04258	CON__P04258	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3916215678001	1	754.391622	753.384345	1.3225	0.00099766	8.35	0.0062992	9.6725	0.0072968	754.3981659506409	24.285	0.048252	24.285	24.261	24.309	0	555	52	1.2891023	0.030546188	1.2891023	262.89062	0	6.22937						63	3	2	NaN	NaN	NaN	0.84887	1	4122	4122		0.32989	0	1	5292.7		+	20200	193	11623	11969	16029	16029					-0.002211697546385949
PPGNPGAP	8	Unmodified	_PPGNPGAP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3518652431001	1	706.351865	705.344589	0.77389	0.00054664	8.8562	0.0062556	9.63	0.0068022	706.357712233362	40.102	0.19234	40.108	40.06	40.252	0.0060463	672	46	1.2188909	0.027062178	1.2173715	248.87463	0	5.525589						176	9	2	NaN	NaN	NaN	0.84876	1	3252	3252		0.39566	0	1	31344	+		20201	10348	11624	11970	16030	16030					-0.019869734337135014
PPGPEPFSTAP	11	Unmodified	_PPGPEPFSTAP_					0	0	0			REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.76911414365	2	548.769114	1095.52368	1.5638	0.00085817	-7.0342	-0.0038602	-5.4704	-0.003002	548.7655204780555	22.573	0.096458	22.573	22.525	22.621	0	1251	160	0.8670771	0.097541094	0.8670771	351.6665	0	39.560394						203	5	2	NaN	NaN	NaN	0.6085	1	12641	12641		13.463	2.2927	1	41276	+		20202	12979	11625	11971	16031	16031					-0.020265536563101705
PPGPEPFSTAP	11	Unmodified						0	0	0			REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.769114	1095.52368	1.5638	0.00085817	-7.0342	-0.0038602	-5.4704	-0.003002	548.7655204780555	22.573	0.096458	22.573	22.525	22.621	0	1251	160	0.8670771	0.097541094	0.8670771	351.6665		39.560394	0.019107	0.0018152	-0.00016117	NaN	13.463	203	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41276	+		20203	12979	11625	11971							-0.020265536563101705
PPGPEPFSTAP	11	Unmodified						0	0	0			REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.769114	1095.52368	1.4228	0.00078078	-12.434	-0.0068235	-11.011	-0.0060427	549.2648832190745	22.548	0.072401	22.535	22.487	22.559	-0.01354	1248	43	0.8689189	0.025794804	0.86739945	352.4135		10.461761	-0.019107	-0.0041115	0.00016117	NaN	13.463	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8190.7	+		20204	12979	11625	11971							-0.020265536563101705
PPGPGGGSF	9	Unmodified	_PPGPGGGSF_					0	0	0		ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.3624299294002	1	772.36243	771.355153	1.3635	0.0010531	6.0832	0.0046984	7.4467	0.0057515	772.3664295322923	32.394	0.0965	32.394	32.37	32.466	0	603	55	1.2603331	0.032396555	1.2603331	256.91653	0	6.6039886						105	5	2	NaN	NaN	NaN	0.61413	1	4371	4371		4.9097	0	1	10392			20205	5154	11626	11972	16032	16032					-0.03966990779281332
PPGPGGGSF	9	Unmodified	_PPGPGGGSF_					0	0	0		ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.3624299294002	1	772.36243	771.355153	1.1209	0.00086573	5.2851	0.004082	6.406	0.0049477	772.366435911986	32.417	0.16898	32.414	32.365	32.534	-0.0031052	603	67	1.2603331	0.03959155	1.2588136	256.91653	0	8.070663						169	8	2	NaN	NaN	NaN	0.61413	1	4297	4297		4.9097	0	1	13932			20206	5154	11626	11972	16033	16033					-0.03966990779281332
PPGPGGKR	8	Unmodified	_PPGPGGKR_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.4365979255001	1	765.436598	764.429321	1.7568	0.0013447	-1.4635	-0.0011202	0.29329	0.00022449	765.4358839611141	55.869	0.096058	55.869	55.845	55.941	0	447	106	1.3536539	0.06267488	1.3536539	275.98355	0	12.778198						124	5	3	NaN	NaN	NaN	0.84876	1	4280	4280		0.39566	0	1	6655.2			20207	6397	11627	11973	16034	16034					0.0376839710289687
PPGPGGKR	8	Unmodified						0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	765.436598	764.429321	-0.0045292	-3.4668E-06	1.741	0.0013326	1.7365	0.0013292	765.438370553826	55.65	0.072067	55.65	55.602	55.674	-0.00059128	471	67	1.3393306	0.039410353	1.3378111	273.06326		8.034973	-0.10963	0.0013446	-0.0079214	NaN	0.39566	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7251.9			20208	6397	11627	11973							0.0376839710289687
PPGPGGTWG	9	Unmodified	_PPGPGGTWG_					0	0	0		ENST00000549639.1_2_12:95942409-95942568:-|nuORF	ENST00000549639.1_2_12:95942409-95942568:-|nuORF	ENST00000549639.1_2_12:95942409-95942568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	825.3889790309001	1	825.388979	824.381703	1.1108	0.00091684	-10.238	-0.0084502	-9.127	-0.0075333	825.3810395117375	29.569	0.193	29.562	29.514	29.707	-0.0070667	510	82	1.316029	0.048442006	1.3145095	267.96832	0	9.8637085						238	9	3	NaN	NaN	NaN	0.61413	1	4964	4964		4.9097	1.7564	1	22993			20209	7538	11628	11974	16035	16035					-0.03751301887950831
PPGPHVGT	8	Unmodified	_PPGPHVGT_					0	0	0		ENST00000444782.5_1_5:141017057-141017809:+|nuORF	ENST00000444782.5_1_5:141017057-141017809:+|nuORF	ENST00000444782.5_1_5:141017057-141017809:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.3940644088001	1	761.394064	760.386788	-0.22112	-0.00016836	8.6821	0.0066105	8.461	0.0064421	761.4003342006464	55.026	0.095943	55.025	55.001	55.097	-0.0006218	471	91	1.3393306	0.05375278	1.3378111	273.08884	0	10.960175						218	5	3	NaN	NaN	NaN	0.84651	1	4145	4145		1.6704	0	1	33217			20210	7016	11629	11975	16036	16036					-0.0029899802533464026
PPGPIAGG	8	Unmodified	_PPGPIAGG_					0	0	0			REV__ENST00000461154.1_1_19:51206993-51207275:-|nuORF	REV__ENST00000461154.1_1_19:51206993-51207275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3617016479002	1	665.361702	664.354425	1.0675	0.00071031	-0.96561	-0.00064248	0.10193	6.7824E-05	665.3618502101962	33.045	0.16895	33.045	32.997	33.166	0	774	46	1.1574414	0.027160883	1.1574414	236.6054	0	5.5522614						140	8	2	NaN	NaN	NaN	0.84876	1	2440	2440		0.39566	0	1	12848	+		20211	12264	11630	11976	16037	16037					0.008822145716749219
PPGPIAGG	8	Unmodified	_PPGPIAGG_					0	0	0			REV__ENST00000461154.1_1_19:51206993-51207275:-|nuORF	REV__ENST00000461154.1_1_19:51206993-51207275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3617016479002	1	665.361702	664.354425	2.1487	0.0014297	-1.9261	-0.0012815	0.22264	0.00014813	665.3605221399426	40.222	0.072094	40.228	40.156	40.228	0.0060463	738	31	1.179155	0.018083096	1.1776356	241.04411	0	3.6965485						49	4	2	NaN	NaN	NaN	0.84876	1	2356	2356		0.39566	0	1	3265.1	+		20212	12264	11630	11976	16038	16038					0.008822145716749219
PPGPSGAN	8	Unmodified	_PPGPSGAN_					0	0	0		C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3311298010001	1	696.33113	695.323853	0.91763	0.00063898	0.36744	0.00025586	1.2851	0.00089484	696.3312731236786	14.332	0.23955	14.321	14.249	14.489	-0.011218	741	64	1.1773466	0.03797245	1.1758271	240.4581	0	7.755371						254	11	2	NaN	NaN	NaN	0.77489	1	3079	3079		12.588	0	1	27410			20213	72	11631	11977	16039	16039					-0.03599563813372697
PPGPSGAN	8	Unmodified						0	0	0		C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	C1QTNF7|p.P46S|1|0.27|ENSG00000163145|chr4:15435879-15435879|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	696.33113	695.323853	1.2887	0.00089736	0.054977	3.8282E-05	1.3437	0.00093564	696.3313635267215	14.333	0.19196	14.333	14.285	14.477	0	735	73	1.1809633	0.043394685	1.1809633	241.19675		8.862793	0.0060496	-0.00013847	0.002568	NaN	12.588	235	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22084			20214	72	11631	11977							-0.03599563813372697
PPGSVVGG	8	Unmodified	_PPGSVVGG_					0	0	0			REV__ENST00000552249.1_1_12:57872476-57873529:-|nuORF	REV__ENST00000552249.1_1_12:57872476-57873529:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3566162700002	1	669.356616	668.34934	1.2094	0.00080951	6.8527	0.0045869	8.0621	0.0053964	669.3616887388234	26.915	0.12062	26.915	26.915	27.036	0	720	64	1.1900014	0.03795612	1.1900014	243.23195	0	7.758087						143	6	3	NaN	NaN	NaN	0.84876	1	2568	2568		0.39566	0	1	14135	+		20215	11990	11632	11978	16040	16040					0.00189910709070773
PPGVLPLLYQ	10	Unmodified	_PPGVLPLLYQ_					0	0	0		ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.8236924031	2	548.823692	1095.63283	1.1233	0.00061648	-1.7643	-0.00096828	-0.64101	-0.0003518	548.8228759025188	20.983	0.096214	20.983	20.959	21.055	0	1212	40	0.8910048	0.023912191	0.8910048	361.37054	0	9.698212						118	5	3	NaN	NaN	NaN	0.7459	1	12668	12668		4.9097	0.49665	1	16503			20216	7609	11633	11979	16041	16041					0.0888407703384928
PPGVLPLLYQ	10	Unmodified						0	0	0		ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.823692	1095.63283	1.1397	0.00062552	-1.2979	-0.00071231	-0.15813	-8.6788E-05	548.8227478451945	21.128	0.16855	21.114	21.065	21.234	-0.014004	1215	46	0.8891654	0.02759397	0.88764596	360.62454		11.191467	0.065318	0.00025584	-0.0016794	NaN	4.9097	164	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18790			20217	7609	11633	11979							0.0888407703384928
PPGVVGGP	8	Unmodified	_PPGVVGGP_					0	0	0		ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3773517121002	1	679.377352	678.370075	1.905	0.0012942	7.0275	0.0047743	8.9325	0.0060685	679.3820434033562	26.263	0.19307	26.263	26.239	26.432	0	741	49	1.1773466	0.028939128	1.1773466	240.57407	0	5.9132843						132	9	2	NaN	NaN	NaN	0.84876	1	2808	2808		0.39566	0	1	10719			20218	1725	11634	11980	16042	16042					0.018025010887299686
PPHPALAP	8	Unmodified	_PPHPALAP_					0	0	0		ENSG00000185634|ENST00000332408|SHC4	ENSG00000185634|ENST00000332408|SHC4	ENSG00000185634|ENST00000332408|SHC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4460999793	1	799.4461	798.438824	1.9858	0.0015876	-1.1888	-0.00095036	0.79706	0.00063721	799.4452470381328	55.1	0.048161	55.1	55.076	55.124	0	486	82	1.3303722	0.04836464	1.3303722	271.03308	0	9.85318						134	3	3	NaN	NaN	NaN	0.84876	1	4735	4735		0.39566	0	1	23249			20219	5426	11635	11981	16043	16043					0.031541653884119114
PPHPGTVG	8	Unmodified	_PPHPGTVG_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.3940644088001	1	761.394064	760.386788	1.7448	0.0013284	7.6055	0.0057908	9.3502	0.0071192	761.3995678294444	55.028	0.072029	55.028	55.004	55.076	0	474	103	1.3375392	0.060926437	1.3375392	272.7236	0	12.422852						180	4	3	NaN	NaN	NaN	0.84692	1	4220	4220		1.4396	0	1	29179	+		20220	8169	11636	11982	16044	16044					-0.0029899802533464026
PPHPGTVG	8	Unmodified						0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	761.394064	760.386788	1.7448	0.0013284	7.6055	0.0057908	9.3502	0.0071192	761.3995678294444	55.028	0.072029	55.028	55.004	55.076	0	474	103	1.3375392	0.060926437	1.3375392	272.7236		12.422852	-0.070811	-0.00035398	-0.0028223	NaN	1.4396	180	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29179	+		20221	8169	11636	11982							-0.0029899802533464026
PPHPGTVG	8	Unmodified						0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	761.394064	760.386788	0.052534	3.9999E-05	9.2182	0.0070187	9.2707	0.0070587	761.4014758343842	55.17	0.048115	55.169	55.169	55.217	-0.0006218	462	49	1.3447032	0.028652906	1.3431838	274.18433		5.8423157	0.070811	0.00087393	0.0028223	NaN	1.4396	67	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6359.1	+		20222	8169	11636	11982							-0.0029899802533464026
PPIHEDHL	8	Unmodified	_PPIHEDHL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.24306656865	2	479.243067	956.47158	2.3322	0.0011177	-0.21891	-0.00010491	2.1133	0.0010128	479.2435857771065	16.587	0.024015	16.574	16.574	16.598	-0.012995	1449	37	0.74507743	0.022261143	0.743558	302.7313	0	9.044891						40	2	2	NaN	NaN	NaN	0.77489	1	7109	7109		12.588	4.2976	1	4637.1			20223	1865	11637	11983	16045	16045					-0.008396722793804656
PPKKGGGA	8	Unmodified	_PPKKGGGA_					0	0	0			REV__ENSG00000167074|ENST00000266304|TEF	REV__ENSG00000167074|ENST00000266304|TEF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.4147998509002	1	711.4148	710.407523	1.313	0.00093406	0.46141	0.00032825	1.7744	0.0012623	711.4150497577909	59.085	0.21609	59.085	58.941	59.157	0	654	58	1.2297117	0.03424585	1.2297117	251.05	0	6.9914093						165	10	3	NaN	NaN	NaN	0.84945	1	3441	3441		0	0	1	19284	+		20224	10457	11638	11984	16046	16046					0.04073592354336597
PPKKGGGA	8	Unmodified	_PPKKGGGA_					0	0	0			REV__ENSG00000167074|ENST00000266304|TEF	REV__ENSG00000167074|ENST00000266304|TEF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4147998509002	1	711.4148	710.407523	-0.67081	-0.00047722	4.1509	0.002953	3.4801	0.0024758	711.4174468691709	59.082	0.21616	59.082	58.962	59.178	-0.00045395	648	52	1.2333171	0.030644298	1.2317977	251.78604	0	6.256134						185	10	2	NaN	NaN	NaN	0.84945	1	3382	3382		0	0	1	26536	+		20225	10457	11638	11984	16047	16047					0.04073592354336597
PPKKGGGA	8	Unmodified						0	0	0			REV__ENSG00000167074|ENST00000266304|TEF	REV__ENSG00000167074|ENST00000266304|TEF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	711.4148	710.407523	1.313	0.00093406	0.46141	0.00032825	1.7744	0.0012623	711.4150497577909	59.085	0.21609	59.085	58.941	59.157	0	654	58	1.2297117	0.03424585	1.2297117	251.05		6.9914093	0.0013485	-0.0013688	-0.001043	NaN	0	165	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19284	+		20226	10457	11638	11984							0.04073592354336597
PPKKGGGA	8	Unmodified						0	0	0			REV__ENSG00000167074|ENST00000266304|TEF	REV__ENSG00000167074|ENST00000266304|TEF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	711.4148	710.407523	-0.67081	-0.00047722	4.1509	0.002953	3.4801	0.0024758	711.4174468691709	59.082	0.21616	59.082	58.962	59.178	-0.00045395	648	52	1.2333171	0.030644298	1.2317977	251.78604		6.256134	-0.0013485	0.0012559	0.001043	NaN	0	185	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26536	+		20227	10457	11638	11984							0.04073592354336597
PPLAPAGG	8	Unmodified	_PPLAPAGG_					0	0	0		ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ENST00000432006.1_1_7:16624422-16624878:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3773517121001	1	679.377352	678.370075	0.77912	0.00052932	8.9466	0.0060781	9.7257	0.0066074	679.3836994857953	35.482	0.24113	35.482	35.434	35.675	0	768	46	1.1610622	0.027155042	1.1610622	237.2466	0	5.548752						160	11	2	NaN	NaN	NaN	0.84651	1	2809	2809		1.6704	0	1	15899			20228	6974	11639	11985	16048	16048					0.018025010887186
PPLAPAGG	8	Unmodified						0	0	0		ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ENST00000432006.1_1_7:16624422-16624878:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.377352	678.370075	0.55951	0.00038012	9.9616	0.0067677	10.521	0.0071478	679.384768926459	35.48	0.21718	35.481	35.433	35.65	0.00052643	765	52	1.1628724	0.03076911	1.161353	237.61647		6.2872314	-0.00047837	0.00035101	0.00014535	NaN	1.6704	218	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21160			20229	6974	11639	11985							0.018025010887186
PPLGAKAK	8	Unmodified	_PPLGAKAK_					0	0	0			REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.4930501719001	1	781.49305	780.485774	-0.18779	-0.00014676	1.7624	0.0013773	1.5746	0.0012305	781.4936601884355	56.827	0.14418	56.826	56.754	56.898	-0.00056458	462	121	1.3447032	0.07157886	1.3431838	274.0592	0	14.588226						266	7	2	NaN	NaN	NaN	0.84887	1	4418	4418		0.32989	0	1	43216	+		20230	12318	11640	11986	16049	16049					0.08675024939566356
PPLGAKAK	8	Unmodified						0	0	0			REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	781.49305	780.485774	-0.18779	-0.00014676	1.7624	0.0013773	1.5746	0.0012305	781.4936601884355	56.827	0.14418	56.826	56.754	56.898	-0.00056458	462	121	1.3447032	0.07157886	1.3431838	274.0592		14.588226	0.034909	0.00065073	0.0010311	NaN	0.32989	266	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43216	+		20231	12318	11640	11986							0.08675024939566356
PPLPFVTQGPK	11	Unmodified	_PPLPFVTQGPK_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.2290080112333	3	394.229008	1179.66519	3.202	0.0012623	-6.5078	-0.0025656	-3.3058	-0.0013032	394.561473702266	17.33	0.071957	17.316	17.244	17.316	-0.013567	1443	16	0.7487872	0.009272933	0.7472678	455.12796	0	5.6362915						29	4	2	NaN	NaN	NaN	0.70989	1	15241	15241		6.8076	2.4974	1	1610.4	+		20232	10388	11641	11987	16050	16050					0.082548644368444
PPLPQGPAAR	10	Unmodified	_PPLPQGPAAR_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.2878084233	2	502.287808	1002.56106	2.0918	0.0010507	1.1458	0.0005755	3.2376	0.0016262	502.288677231456	25.708	0.072371	25.708	25.708	25.781	0	1284	40	0.8468043	0.023976922	0.8468043	343.83957	0	9.735657						61	4	2	NaN	NaN	NaN	0.76548	1	8708	8708		3.5698	0.35817	1	5143.7	+		20233	11022	11642	11988	16051	16051					0.05988582399993447
PPLPQGPAAR	10	Unmodified						0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.287808	1002.56106	2.0918	0.0010507	1.1458	0.0005755	3.2376	0.0016262	502.288677231456	25.708	0.072371	25.708	25.708	25.781	0	1284	40	0.8468043	0.023976922	0.8468043	343.83957		9.735657	-0.030252	-0.00025145	0.0035263	NaN	3.5698	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5143.7	+		20234	11022	11642	11988							0.05988582399993447
PPLPQGPAAR	10	Unmodified						0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.287808	1002.56106	2.5686	0.0012902	1.6418	0.00082467	4.2104	0.0021149	502.28884359581264	25.78	0.072414	25.769	25.745	25.817	-0.0116	1293	31	0.84127116	0.018444777	0.8397517	341.59286		7.48938	0.030252	0.0002469	-0.0035263	NaN	3.5698	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3408.9	+		20235	11022	11642	11988							0.05988582399993447
PPLPSRRL	8	Unmodified	_PPLPSRRL_					0	0	0		ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.5785111358001	1	935.578511	934.571235	1.4951	0.0013988	5.455	0.0051035	6.9501	0.0065023	935.5838116206156	39.452	0.1682	39.457	39.457	39.625	0.0053368	891	64	1.086679	0.038184762	1.0851595	220.84016	0	7.760086						206	8	2	NaN	NaN	NaN	0.84756	1	6580	6580		1.072	0	1	43614			20236	6420	11643	11989	16052	16052					0.10133190125225155
PPLQVTNRYL	10	Unmodified	_PPLQVTNRYL_					0	0	0		ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000595984.5_1_19:19010490-19010792:-|nuORF	ENST00000595984.5_1_19:19010490-19010792:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8404050998001	2	600.840405	1199.66626	1.1175	0.00067142	-6.1074	-0.0036696	-4.9899	-0.0029982	600.8371326321474	26.988	0.14478	26.988	26.94	27.084	0	1086	85	0.9680805	0.051289678	0.9680805	392.2075	0	20.77945						308	7	4	NaN	NaN	NaN	0.41241	1	16474	16474		23.086	3.9675	1	46813			20237	7754	11644	11990	16053	16053					0.07441078805754842
PPMAHFFV	8	Unmodified	_PPMAHFFV_					0	0	0		ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.23619866425	2	473.236199	944.457844	1.2643	0.00059832	2.0694	0.00097934	3.3337	0.0015777	473.2370916593745	24.14	0.04826	24.14	24.14	24.188	0	1218	34	0.8873258	0.020235598	0.8873258	360.59296	0	8.223389						40	3	2	NaN	NaN	NaN	0.84876	1	6928	6928		0.39566	0	1	3338.4			20238	6875	11645	11991	16054	16054					-0.016606213121690416
PPMAHFFV	8	Unmodified						0	0	0		ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.236199	944.457844	2.1382	0.0010119	3.0885	0.0014616	5.2267	0.0024735	473.23826476842703	24.164	0.024101	24.151	24.127	24.151	-0.012749	1266	28	0.85786515	0.016585052	0.8563457	348.6207		6.739868	0.0055736	0.00062073	-0.01549	NaN	0.39566	24	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1540.7			20239	6875	11645	11991							-0.016606213121690416
PPMGIGAAGA	10	Unmodified	_PPMGIGAAGA_					0	0	0			REV__ENST00000492381.5_1_22:20909161-20940988:+|nuORF	REV__ENST00000492381.5_1_22:20909161-20940988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.4236499777	1	841.42365	840.416374	1.1117	0.00093545	-1.8892	-0.0015896	-0.7774	-0.00065413	841.4217217985308	22.621	0.28927	22.607	22.559	22.848	-0.01354	1218	136	0.8873258	0.082844675	0.8858064	180.61974	0	16.863464						522	13	3	NaN	NaN	NaN	0.77832	1	5141	5141		0.92586	0.5302	1	59108	+		20240	8778	11646	11992	16055	16055					-0.010218020715115017
PPMGIGAAGA	10	Unmodified						0	0	0			REV__ENST00000492381.5_1_22:20909161-20940988:+|nuORF	REV__ENST00000492381.5_1_22:20909161-20940988:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	841.42365	840.416374	1.1117	0.00093545	-1.8892	-0.0015896	-0.7774	-0.00065413	841.4217217985308	22.621	0.28927	22.607	22.559	22.848	-0.01354	1218	136	0.8873258	0.082844675	0.8858064	180.61974		16.863464	0.017074	0.00016248	-0.00075972	NaN	0.92586	522	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59108	+		20241	8778	11646	11992							-0.010218020715115017
PPMQNGPVAAP	11	Unmodified	_PPMQNGPVAAP_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.77113390385	2	539.771134	1077.52771	2.0543	0.0011089	-4.9264	-0.0026591	-2.8721	-0.0015503	539.7687331670869	37.961	0.072105	37.964	37.916	37.988	0.0034256	1275	43	0.85233563	0.025808692	0.8508162	345.7594	0	10.4696045						55	4	2	NaN	NaN	NaN	0.688	1	11548	11548		8.2448	0.65722	1	3156.9	+		20242	9254	11647	11993	16056	16056					-0.007947874342335126
PPNVGGGG	8	Unmodified	_PPNVGGGG_					0	0	0			REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|30|2|sense	REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|30|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.3205651147001	1	654.320565	653.313289	1.5476	0.0010126	3.4936	0.0022859	5.0412	0.0032986	654.323603868762	23.441	0.096527	23.441	23.417	23.513	0	1050	40	0.9900381	0.023773253	0.9900381	202.45358	0	4.8614197						78	5	2	NaN	NaN	NaN	0.84876	1	2148	2148		0.39566	0	1	7558.1	+		20243	13355	11648	11994	16057	16057					-0.02723546467802862
PPPAAAAA	8	Unmodified	_PPPAAAAA_					0	0	0		ENSG00000137273|ENST00000645481|FOXF2;ENST00000360947.7_1_14:21561809-21566788:-|nuORF;ENST00000397992.5_1_16:72984846-73092758:-|nuORF;ENSG00000113196|ENST00000231121|HAND1;nc|ENSG00000180190|Q86YL5-2|TDRP;ENST00000319331.3_1_3:3841200-3886220:+|nuORF;ENSG00000180190|ENST00000324079|TDRP;ENST00000261205.8_1_12:79258472-79371593:+|nuORF	ENSG00000137273|ENST00000645481|FOXF2;REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	ENSG00000137273|ENST00000645481|FOXF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3617016478998	1	665.361702	664.354425	0.8533	0.00056775	-2.4498	-0.00163	-1.5965	-0.0010622	665.3603591254295	37.915	0.16822	37.915	37.843	38.011	0	756	76	1.1683017	0.04521489	1.1683017	238.82547	0	9.242874						155	8	2	NaN	NaN	NaN	0.84876	1	2439	2439		0.39566	0	1	14219			20244	3080;8148	11649	11995	16058	16058					0.008822145716408158
PPPAGAAA	8	Unmodified	_PPPAGAAA_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3460515836999	1	651.346052	650.338775	0.82483	0.00053725	-4.6361	-0.0030197	-3.8113	-0.0024825	651.3438716525866	37.506	0.19265	37.506	37.458	37.65	0	726	70	1.1863867	0.041584373	1.1863867	242.62782	0	8.50441						282	9	3	NaN	NaN	NaN	0.84876	1	2066	2066		0.39566	0	1	32705	+		20245	8625	11650	11996	16059	16059					-0.000380719453914935
PPPAGAAA	8	Unmodified						0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	651.346052	650.338775	0.82483	0.00053725	-4.6361	-0.0030197	-3.8113	-0.0024825	651.3438716525866	37.506	0.19265	37.506	37.458	37.65	0	726	70	1.1863867	0.041584373	1.1863867	242.62782		8.50441	-0.00015833	-0.00049882	0.00075972	NaN	0.39566	282	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32705	+		20246	8625	11650	11996							-0.000380719453914935
PPPEQPVLVP	10	Unmodified	_PPPEQPVLVP_					0	0	0		ENST00000553027.1_1_12:49319073-49319295:-|nuORF;ENST00000551694.5_1_12:49318004-49319277:-|nuORF	ENST00000553027.1_1_12:49319073-49319295:-|nuORF	ENST00000553027.1_1_12:49319073-49319295:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.8054996499501	2	536.8055	1071.59645	1.8503	0.00099324	-10.72	-0.0057543	-8.8693	-0.0047611	536.7998338748263	21.681	0.072325	21.681	21.633	21.705	0	1251	40	0.8670771	0.023943245	0.8670771	351.76404	0	9.7135315						90	4	3	NaN	NaN	NaN	0.68669	1	11637	11637		8.962	2.0988	1	9988.1			20247	7549	11651	11997	16060	16060					0.06351200137146407
PPPEQPVLVP	10	Unmodified						0	0	0		ENST00000553027.1_1_12:49319073-49319295:-|nuORF;ENST00000551694.5_1_12:49318004-49319277:-|nuORF	ENST00000553027.1_1_12:49319073-49319295:-|nuORF	ENST00000553027.1_1_12:49319073-49319295:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.8055	1071.59645	1.5249	0.00081857	-13.163	-0.0070661	-11.638	-0.0062475	537.2970861929531	21.826	0.048151	21.812	21.812	21.86	-0.013895	1254	28	0.8652351	0.016576052	0.86371565	351.01678		6.7247314	0.065226	-0.0011491	-0.0016807	NaN	8.962	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4768			20248	7549	11651	11997							0.06351200137146407
PPPGAAGG	8	Unmodified	_PPPGAAGG_					0	0	0			REV__ENSG00000259330|ENST00000638170|INAFM2	REV__ENSG00000259330|ENST00000638170|INAFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.3147514553001	1	623.314751	622.307475	0.91483	0.00057023	2.5376	0.0015817	3.4524	0.002152	623.3160976015843	26.48	0.12064	26.47	26.397	26.518	-0.010645	1146	70	0.93142134	0.04219216	0.9299019	190.66139	0	8.6367035						159	6	2	NaN	NaN	NaN	0.84945	1	1112	1112		0	0	1	35226	+		20249	11390	11652	11998	16061	16061					-0.01878644979467481
PPPGAAGG	8	Unmodified	_PPPGAAGG_					0	0	0			REV__ENSG00000259330|ENST00000638170|INAFM2	REV__ENSG00000259330|ENST00000638170|INAFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.3147514553001	1	623.314751	622.307475	1.1198	0.00069798	6.5086	0.0040569	7.6284	0.0047549	623.3183422749178	31.548	0.048279	31.544	31.544	31.592	-0.0044174	1146	34	0.93142134	0.020185351	0.9299019	190.66138	0	4.1319427						39	3	2	NaN	NaN	NaN	0.84945	1	1113	1113		0	0	1	2703.4	+		20250	11390	11652	11998	16062	16062					-0.01878644979467481
PPPGAGGR	8	Unmodified	_PPPGAGGR_					0	0	0			REV__nc|ENSG00000198719|O00548-2|DLL1	REV__nc|ENSG00000198719|O00548-2|DLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3787486956	1	708.378749	707.371472	0.3188	0.00022583	-8.0849	-0.0057272	-7.7661	-0.0055014	708.3728828092391	38.251	0.19222	38.251	38.179	38.372	0	732	49	1.1827712	0.02892363	1.1827712	241.48659	0	5.905319						218	9	3	NaN	NaN	NaN	0.84651	1	3364	3364		1.6704	0	1	25382	+		20251	11184	11653	11999	16063	16063					0.006081351774696486
PPPGAGGR	8	Unmodified						0	0	0			REV__nc|ENSG00000198719|O00548-2|DLL1	REV__nc|ENSG00000198719|O00548-2|DLL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.378749	707.371472	0.3188	0.00022583	-8.0849	-0.0057272	-7.7661	-0.0055014	708.3728828092391	38.251	0.19222	38.251	38.179	38.372	0	732	49	1.1827712	0.02892363	1.1827712	241.48659		5.905319	-0.01253	-7.3608E-05	-0.00014419	NaN	1.6704	218	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25382	+		20252	11184	11653	11999							0.006081351774696486
PPPGAKGL	8	Unmodified	_PPPGAKGL_					0	0	0		ENST00000434027.2_1_5:98106159-98115843:+|nuORF	ENST00000434027.2_1_5:98106159-98115843:+|nuORF	ENST00000434027.2_1_5:98106159-98115843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.435200942	1	736.435201	735.427924	1.8367	0.0013526	-3.471	-0.0025562	-1.6343	-0.0012036	736.4326327640354	28.001	0.3137	28.001	27.857	28.17	0	651	91	1.2315145	0.05409825	1.2315145	251.25621	0	11.037262						499	14	4	NaN	NaN	NaN	0.84876	1	3837	3837		0.39566	0	1	129600			20253	6984	11654	12000	16064	16064					0.049627630141344525
PPPGAQGV	8	Unmodified	_PPPGAQGV_					0	0	0		nc|ENSG00000100294|Q8IVS2-2|MCAT;ENSG00000100294|ENST00000290429|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	nc|ENSG00000100294|Q8IVS2-2|MCAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3831653715001	1	722.383165	721.375889	1.103	0.00079682	5.902	0.0042635	7.005	0.0050603	722.3879616030509	26.673	0.072388	26.663	26.639	26.711	-0.010643	588	70	1.2693287	0.041371346	1.2678093	259.0634	0	8.443695						113	4	2	NaN	NaN	NaN	0.78264	1	3545	3545		11.548	2.4253	1	12366			20254	1217	11655	12001	16065	16065					0.004055996003899054
PPPGGALV	8	Unmodified	_PPPGGALV_					0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	354.20796415354994	2	354.207964	706.401375	1.0072	0.00035677	-3.4527	-0.001223	-2.4455	-0.00086621	354.2069139384669	33.89	0.19306	33.89	33.817	34.01	0	1470	43	0.7320868	0.025991142	0.7320868	298.94022	0	10.61322						265	9	4	NaN	NaN	NaN	0.84876	1	3345	3345		0.39566	0	1	64543	+		20255	11914	11656	12002	16066	16066					0.03643074122794587
PPPGGALV	8	Unmodified						0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	354.207964	706.401375	1.0072	0.00035677	-3.4527	-0.001223	-2.4455	-0.00086621	354.2069139384669	33.89	0.19306	33.89	33.817	34.01	0	1470	43	0.7320868	0.025991142	0.7320868	298.94022		10.61322	-0.17979	0.00033154	0.00075972	NaN	0.39566	265	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64543	+		20256	11914	11656	12002							0.03643074122794587
PPPGGALV	8	Unmodified						0	0	0			REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	REV__ENST00000372733.3_1_20:43955353-43955551:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	354.207964	706.401375	1.4772	0.00052325	-4.2533	-0.0015065	-2.776	-0.0009833	354.2065498222565	34.251	0.3858	34.249	34.129	34.514	-0.0012474	1470	40	0.7320868	0.024135947	0.73056734	298.94022		9.855652	0.17979	-0.00023559	-0.00075972	NaN	0.39566	315	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58674	+		20257	11914	11656	12002							0.03643074122794587
PPPGGAPL	8	Unmodified	_PPPGGAPL_					0	0	0			REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3930017762999	1	705.393002	704.385725	0.97166	0.0006854	-10.844	-0.0076493	-9.8723	-0.0069639	705.3853344140265	24.743	0.096489	24.731	24.731	24.827	-0.012394	618	55	1.2513325	0.03241384	1.2498131	255.50534	0	6.6184845						105	5	2	NaN	NaN	NaN	0.84876	1	3234	3234		0.39566	0	1	12855	+		20258	11808	11657	12003	16067	16067					0.021707876057462272
PPPGGAPL	8	Unmodified						0	0	0			REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	705.393002	704.385725	1.0169	0.00071728	-10.425	-0.0073538	-9.4083	-0.0066366	705.3858141586048	24.743	0.096537	24.743	24.743	24.84	0	618	67	1.2513325	0.039625406	1.2513325	255.50533		8.090988	0.0062585	0.0001253	0.00075972	NaN	0.39566	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14312	+		20259	11808	11657	12003							0.021707876057462272
PPPGGAPL	8	Unmodified						0	0	0			REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	REV__ENST00000352886.10_1_17:18231891-18232113:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	705.393002	704.385725	0.97166	0.0006854	-10.844	-0.0076493	-9.8723	-0.0069639	705.3853344140265	24.743	0.096489	24.731	24.731	24.827	-0.012394	618	55	1.2513325	0.03241384	1.2498131	255.50534		6.6184845	-0.0062585	-0.00017014	-0.00075972	NaN	0.39566	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12855	+		20260	11808	11657	12003							0.021707876057462272
PPPGGGAG	8	Unmodified	_PPPGGGAG_					0	0	0			REV__ENSG00000125753|ENST00000245932|VASP	REV__ENSG00000125753|ENST00000245932|VASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.2991013911001	1	609.299101	608.291825	2.1632	0.001318	-1.7344	-0.0010568	0.42878	0.00026125	609.2987917381836	22.597	0.024122	22.583	22.583	22.607	-0.01354	1155	37	0.92591566	0.022031128	0.9243962	189.62813	0	4.5119934						29	2	2	NaN	NaN	NaN	0.84876	1	721	721		0.39566	0	1	1939	+		20261	8702	11658	12004	16068	16068					-0.027989314965225276
PPPGGGGG	8	Unmodified	_PPPGGGGG_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2834513269	1	595.283451	594.276175	1.4111	0.00084001	-10.383	-0.0061808	-8.9719	-0.0053408	595.2767109329545	22.019	0.072239	22.019	21.946	22.019	0	1209	88	0.892844	0.05331379	0.892844	182.94966	0	10.924362						171	4	2	NaN	NaN	NaN	0.84945	1	572	572		0	0	1	16487			20262	5205	11659	12005	16069	16069					-0.03719218013577574
PPPGGSGV	8	Unmodified	_PPPGGSGV_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3409662058001	1	667.340966	666.33369	1.9654	0.0013116	5.1744	0.0034531	7.1398	0.0047647	667.3442921734853	26.336	0.14482	26.336	26.288	26.432	0	672	115	1.2188909	0.068561316	1.2188909	249.152	0	14.014526						234	7	3	NaN	NaN	NaN	0.82332	1	2492	2492		6.0903	2.0366	1	23449			20263	4660	11660	12006	16070	16070					-0.012823758080003245
PPPGGSGV	8	Unmodified						0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	667.340966	666.33369	1.7111	0.0011419	5.9698	0.0039839	7.6808	0.0051257	667.3452234181466	26.36	0.14478	26.349	26.3	26.445	-0.011135	669	85	1.2206948	0.05049181	1.2191753	249.52072		10.320969	0.0063622	0.00027256	0.00014226	NaN	6.0903	210	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20121			20264	4660	11660	12006							-0.012823758080003245
PPPGMFVV	8	Unmodified	_PPPGMFVV_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.22529962695	2	422.2253	842.436046	1.8083	0.00076349	4.5411	0.0019174	6.3494	0.0026809	422.2280848983246	22.067	0.096529	22.067	22.067	22.163	0	1389	73	0.7821392	0.044392228	0.7821392	318.3985	0	18.071503						54	5	2	NaN	NaN	NaN	0.84651	1	5300	5300		1.6704	0.2308	1	2802.4			20265	4016	11661	12007	16071	16071					0.008525739392553078
PPPGSGRP	8	Unmodified	_PPPGSGRP_					0	0	0		ENST00000533820.5_1_11:64979162-64979339:+|nuORF	ENST00000533820.5_1_11:64979162-64979339:+|nuORF	ENST00000533820.5_1_11:64979162-64979339:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.70611995634994	2	382.70612	763.397687	1.4461	0.00055345	-5.5086	-0.0021082	-4.0625	-0.0015547	382.7045831303575	28.218	0.14482	28.209	28.161	28.305	-0.0089779	1437	28	0.7524962	0.016687691	0.75097674	306.8387	0	6.8046265						77	7	2	NaN	NaN	NaN	0.84727	1	4188	4188		1.2418	0	1	6140.2			20266	7462	11662	12008	16072	16072					0.00652404348932123
PPPGSGRP	8	Unmodified						0	0	0		ENST00000533820.5_1_11:64979162-64979339:+|nuORF	ENST00000533820.5_1_11:64979162-64979339:+|nuORF	ENST00000533820.5_1_11:64979162-64979339:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	382.70612	763.397687	1.7152	0.00065642	-5.1141	-0.0019572	-3.3989	-0.0013008	382.7038763474839	28.146	0.12067	28.146	28.098	28.219	0	1437	31	0.7524962	0.018544972	0.7524962	306.8387		7.56192	-0.031364	0.00012077	0.00075972	NaN	1.2418	65	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5175.6			20267	7462	11662	12008							0.00652404348932123
PPPGVGPA	8	Unmodified	_PPPGVGPA_					0	0	0		ENST00000373476.5_1_1:33283156-33290959:+|nuORF	ENST00000373476.5_1_1:33283156-33290959:+|nuORF	ENST00000373476.5_1_1:33283156-33290959:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3773517121	1	691.377352	690.370075	0.96242	0.0006654	-10.839	-0.0074937	-9.8763	-0.0068283	691.3695436194	27.663	0.12063	27.653	27.605	27.726	-0.009552	624	91	1.247731	0.054057837	1.2462115	254.86856	0	11.04216						157	6	2	NaN	NaN	NaN	0.81214	1	2975	2975		7.5902	3.5366	1	20313			20268	6676	11663	12009	16073	16073					0.012505010887025492
PPPGVGPA	8	Unmodified						0	0	0		ENST00000373476.5_1_1:33283156-33290959:+|nuORF	ENST00000373476.5_1_1:33283156-33290959:+|nuORF	ENST00000373476.5_1_1:33283156-33290959:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	691.377352	690.370075	1.5802	0.0010925	-11.502	-0.0079521	-9.9216	-0.0068596	691.3697286998835	27.639	0.16889	27.639	27.591	27.76	0	624	106	1.247731	0.06307769	1.247731	254.86858		12.8845825	-0.0068899	-0.00023252	0.00075972	NaN	7.5902	196	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21705			20269	6676	11663	12009							0.012505010887025492
PPPGWGGG	8	Unmodified	_PPPGWGGG_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3413005568002	1	724.341301	723.334024	0.95175	0.00068939	-0.47258	-0.00034231	0.47917	0.00034708	724.3411402469652	20.766	0.14443	20.752	20.704	20.849	-0.014086	1509	64	0.70793515	0.03903961	0.7064157	144.4786	0	7.9673767						166	7	2	NaN	NaN	NaN	0.84945	1	3579	3579		0	0	1	21568	+		20270	13106	11664	12010	16074	16074					-0.03870956088132971
PPPLPVAK	8	Unmodified	_PPPLPVAK_					0	0	0		JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant;nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.513451263	1	818.513451	817.506175	2.194	0.0017958	-3.039	-0.0024875	-0.84506	-0.00069169	818.5088624578085	54.572	0.19256	54.572	54.5	54.692	0	393	76	1.3858368	0.044662952	1.3858368	282.22144	0	9.0954895						293	9	3	NaN	NaN	NaN	0.84876	1	4987	4987		0.39566	0	1	55478			20271	3772	11665	12011	16075	16075					0.09012195599359529
PPPLSPQQP	9	Unmodified	_PPPLSPQQP_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.7610921463	2	480.761092	959.507631	1.639	0.00078797	-4.6872	-0.0022534	-3.0482	-0.0014655	480.76016899474666	14.428	0.11975	14.417	14.345	14.465	-0.011219	1569	46	0.6707121	0.027946115	0.6691927	272.50385	0	11.354248						166	6	3	NaN	NaN	NaN	0.35794	1	7180	7180		15.463	4.2923	1	20930	+		20272	9375	11666	12012	16076	16076					0.026257848974637454
PPPLSPQQP	9	Unmodified						0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	480.761092	959.507631	1.639	0.00078797	-4.6872	-0.0022534	-3.0482	-0.0014655	480.76016899474666	14.428	0.11975	14.417	14.345	14.465	-0.011219	1569	46	0.6707121	0.027946115	0.6691927	272.50385		11.354248	0.053876	-0.0010658	-0.00075972	NaN	15.463	166	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20930	+		20273	9375	11666	12012							0.026257848974637454
PPPMAGGU	8	Unmodified	_PPPMAGGU_					0	0	0		ENSG00000113811|ENST00000495461|SELENOK	ENSG00000113811|ENST00000495461|SELENOK	ENSG00000113811|ENST00000495461|SELENOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.12878530225004	2	389.128785	776.243018	0.61487	0.00023926	1.2993	0.00050561	1.9142	0.00074487	389.12920668807163	39.983	0.12029	39.983	39.935	40.056	0	1515	43	0.7042165	0.026036322	0.7042165	287.0684	0	10.613495						93	6	3	NaN	NaN	NaN	0.84945	1	4442	4442		0	0	0	5890.2			20274	1933	11667	12013	16077	16077					-0.15405411682866088
PPPMLGGG	8	Unmodified	_PPPMLGGG_					0	0	0		ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.3650724663003	1	725.365072	724.357796	0.61468	0.00044587	0.25113	0.00018216	0.86582	0.00062803	725.3654047589808	37.699	0.16845	37.699	37.626	37.795	0	726	49	1.1863867	0.028917432	1.1863867	242.11679	0	5.901428						126	8	2	NaN	NaN	NaN	0.84945	1	3674	3674		0	0	1	10670			20275	5037	11668	12014	16078	16078					-0.015408586459670914
PPPNIGGG	8	Unmodified	_PPPNIGGG_					0	0	0			REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|39|3|sense	REV__SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|39|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073002	1	708.367515	707.360239	1.1131	0.00078845	-1.0076	-0.00071373	0.10548	7.4722E-05	708.3666776605497	36.567	0.26532	36.567	36.374	36.639	0	696	79	1.2044523	0.0469656	1.2044523	245.91325	0	9.588974						317	12	2	NaN	NaN	NaN	0.84876	1	3356	3356		0.39566	0	1	45473	+		20276	13352	11669	12015	16079	16079					-0.005146869166537726
PPPPGKAA	8	Unmodified	_PPPPGKAA_					0	0	0		nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-5|COBL	nc|ENSG00000106078|O75128-5|COBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.4195508777999	1	734.419551	733.412274	1.1334	0.00083239	-2.8753	-0.0021116	-1.7419	-0.0012793	734.419473494225	53.336	0.047977	53.336	53.336	53.384	-0.00053406	603	34	1.2603331	0.019792676	1.2588136	257.14874	0	4.03833						30	3	2	NaN	NaN	NaN	0.84887	1	3726	3726		0.32989	0	1	1726.1			20277	1586	11670	12016	16080	16080					0.03490476497074724
PPPPPMMG	8	Unmodified	_PPPPPMMG_					0	0	0			REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.3840933489001	1	823.384093	822.376817	1.8326	0.001509	-3.2685	-0.0026912	-1.4358	-0.0011822	823.3808729766617	24.598	0.12062	24.598	24.574	24.695	0	468	34	1.3411216	0.019697785	1.3411216	273.08856	0	4.011017						65	6	2	NaN	NaN	NaN	0.84651	1	5045	5045		1.6704	0	1	3439.1	+		20278	10494	11671	12017	16081	16081					-0.04147645346574791
PPPQLLTR	8	Unmodified	_PPPQLLTR_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000572019.1_1_17:5319973-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5516276833	1	921.551628	920.544351	0.16284	0.00015007	-1.056	-0.00097312	-0.89312	-0.00082306	921.5503932625968	54.138	0.071884	54.137	54.089	54.161	-0.0006218	399	43	1.382264	0.025015235	1.3807446	280.97256	0	5.084839						58	4	2	NaN	NaN	NaN	0.82797	1	6300	6300		5.4659	0	1	3279.7			20279	1682	11672	12018	16082	16082					0.08090081514035319
PPPTPGPA	8	Unmodified	_PPPTPGPA_					0	0	0			REV__nc|ENSG00000117411|O60909-2|B4GALT2	REV__nc|ENSG00000117411|O60909-2|B4GALT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3879163984	1	733.387916	732.38064	1.6505	0.0012104	-10.619	-0.0077881	-8.9688	-0.0065776	733.3807392590587	27.229	0.2896	27.229	27.157	27.446	0	579	166	1.2747238	0.0990268	1.2747238	260.0917	0	20.205215						862	13	5	NaN	NaN	NaN	0.82797	1	3792	3792		5.4659	0	1	339780	+		20280	9732	11673	12019	16083	16083					0.0037448374313271415
PPPTSVKIQI	10	Unmodified	_PPPTSVKIQI_					0	0	0			REV__nc|ENSG00000078900|O15350-12|TP73	REV__nc|ENSG00000078900|O15350-12|TP73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3265992328	2	540.326599	1078.63865	1.7046	0.00092102	2.7303	0.0014752	4.4349	0.0023963	540.3290033449938	55.22	0.09626	55.22	55.172	55.268	0	1218	37	0.8873258	0.022076428	0.8873258	359.94885	0	8.955383						143	5	4	NaN	NaN	NaN	0.76548	1	11931	11931		3.5698	1.3934	1	14253	+		20281	8636	11674	12020	16084	16084					0.1024717554550989
PPPVGGGS	8	Unmodified	_PPPVGGGS_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-7|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3409662058001	1	667.340966	666.33369	1.7111	0.0011419	5.9698	0.0039839	7.6808	0.0051257	667.3452234181466	26.36	0.14478	26.349	26.3	26.445	-0.011135	669	85	1.2206948	0.05049181	1.2191753	249.52072	0	10.320969						210	7	3	NaN	NaN	NaN	0.84727	1	2402	2402		1.2418	0	1	20121	+		20282	9777	11675	12021	16085	16085					-0.012823758080003245
PPPVGGQG	8	Unmodified	_PPPVGGQG_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073001	1	708.367515	707.360239	1.3993	0.00099118	-6.7794	-0.0048023	-5.3802	-0.0038111	708.3628334272398	57.525	0.023945	57.525	57.525	57.549	0	501	64	1.3214091	0.037673116	1.3214091	269.79236	0	7.691742						51	2	2	NaN	NaN	NaN	0.84692	1	3355	3355		1.4396	0	1	3834.9			20283	4755	11676	12022	16086	16086					-0.005146869166651413
PPPVIKIP	8	Unmodified	_PPPVIKIP_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.7838389611	2	430.783839	859.553125	1.6192	0.00069754	-1.5068	-0.00064911	0.11241	4.8425E-05	430.7832085239846	22.935	0.096352	22.935	22.911	23.007	0	1344	37	0.8098828	0.022176862	0.8098828	329.58743	0	9.025055						82	5	2	NaN	NaN	NaN	0.80071	1	5530	5530		9.1232	0	1	12477			20284	794	11677	12023	16087	16087					0.11773055150513301
PPRILKLLL	9	Unmodified	_PPRILKLLL_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|7|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|7|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|7|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.7397628047001	1	1062.73976	1061.73249	1.6389	0.0017418	-6.0629	-0.0064433	-4.424	-0.0047016	1062.7336825016853	39.189	0.5777	39.189	39.093	39.67	0	204	142	1.4979934	0.0834769	1.4979934	303.89957	0	16.935028						1796	25	5	NaN	NaN	NaN	0.68748	1	11206	11206		0.27539	0.082904	1	897790			20285	7847	11678	12024	16088	16088					0.20408939438470952
PPRWPQRSS	9	Unmodified	_PPRWPQRSS_					0	0	0			REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENSG00000092051|ENST00000356300|JPH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.86495166099996	3	370.864952	1109.57303	1.4767	0.00054766	-6.0348	-0.0022381	-4.558	-0.0016904	370.86235730512476	21.296	0.09631	21.296	21.248	21.344	0	1449	31	0.74507743	0.018550932	0.74507743	453.20303	0	11.2838745						68	5	2	NaN	NaN	NaN	0.62619	1	13256	13256		2.3381	0	1	4770.1	+		20286	8741	11679	12025	16089	16089					0.02262199143183352
PPSAGPSM	8	Unmodified	_PPSAGPSM_					0	0	0		ENSG00000153495|ENST00000283547|TEX29	ENSG00000153495|ENST00000283547|TEX29	ENSG00000153495|ENST00000283547|TEX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3392516463	1	743.339252	742.331975	1.6122	0.0011984	4.3131	0.0032061	5.9253	0.0044045	743.3428932886841	28.291	0.16888	28.291	28.267	28.436	0	609	52	1.2567334	0.03060162	1.2567334	256.35776	0	6.2423553						139	8	2	NaN	NaN	NaN	0.84455	1	3944	3944		2.7852	1.1148	1	14106			20287	3810	11680	12026	16090	16090					-0.04949752888273906
PPSEGELVE	9	Unmodified	_PPSEGELVE_					0	0	0		ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4571181756002	1	956.457118	955.449842	1.4401	0.0013774	-0.62163	-0.00059456	0.81852	0.00078288	956.4563881087024	30.56	0.19309	30.56	30.511	30.704	0	309	112	1.435777	0.065897584	1.435777	291.69296	0	13.387787						523	9	3	NaN	NaN	NaN	0.025843	1	7212	7212		64.55	25.632	1	118560			20288	2543	11681	12027	16091	16091					-0.029665218185982667
PPSEGELVE	9	Unmodified	_PPSEGELVE_					0	0	0		ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	ENST00000589104.5_1_19:5070919-5151519:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4571181756002	1	956.457118	955.449842	1.435	0.0013725	-1.064	-0.0010177	0.37094	0.00035479	956.4560683233709	30.559	0.19303	30.553	30.48	30.673	-0.0057564	303	100	1.4393384	0.058761	1.437819	292.41653	0	11.937897						567	9	4	NaN	NaN	NaN	0.0094682	1	7069	7069		93.472	37.978	1	122380			20289	2543	11681	12027	16092	16092					-0.029665218185982667
PPSGAALG	8	Unmodified	_PPSGAALG_					0	0	0			REV__ENSG00000223953|ENST00000528368|C1QTNF5	REV__ENSG00000223953|ENST00000528368|C1QTNF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3566162700001	1	669.356616	668.34934	1.1443	0.00076594	5.8492	0.0039152	6.9935	0.0046811	669.3602926424986	26.939	0.19312	26.928	26.904	27.097	-0.010645	717	70	1.1918083	0.04154861	1.1902889	243.60132	0	8.492401						162	9	2	NaN	NaN	NaN	0.84651	1	2475	2475		1.6704	0	1	17023	+		20290	11309	11682	12028	16093	16093					0.0018991070905940433
PPSGAALG	8	Unmodified						0	0	0			REV__ENSG00000223953|ENST00000528368|C1QTNF5	REV__ENSG00000223953|ENST00000528368|C1QTNF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.356616	668.34934	1.2094	0.00080951	6.8527	0.0045869	8.0621	0.0053964	669.3616887388234	26.915	0.12062	26.915	26.915	27.036	0	720	64	1.1900014	0.03795612	1.1900014	243.23195		7.758087	-0.0063385	0.00032126	-0.0001438	NaN	1.6704	143	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14135	+		20291	11309	11682	12028							0.0018991070905940433
PPSGAALG	8	Unmodified						0	0	0			REV__ENSG00000223953|ENST00000528368|C1QTNF5	REV__ENSG00000223953|ENST00000528368|C1QTNF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.356616	668.34934	1.1443	0.00076594	5.8492	0.0039152	6.9935	0.0046811	669.3602926424986	26.939	0.19312	26.928	26.904	27.097	-0.010645	717	70	1.1918083	0.04154861	1.1902889	243.60132		8.492401	0.0063385	-0.0003505	0.0001438	NaN	1.6704	162	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17023	+		20292	11309	11682	12028							0.0018991070905940433
PPSGAVPV	8	Unmodified	_PPSGAVPV_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4035664626001	1	723.403566	722.39629	1.1625	0.00084096	4.6986	0.003399	5.8611	0.00424	723.404831370014	35.505	0.096542	35.505	35.457	35.553	0.00052643	591	34	1.26753	0.019786358	1.2660105	258.68945	0	4.0381775						67	5	2	NaN	NaN	NaN	0.84692	1	3565	3565		1.4396	0	1	3957.8			20293	3540	11683	12029	16094	16094					0.02398770260197125
PPSGAVPV	8	Unmodified						0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	723.403566	722.39629	0.70346	0.00050889	6.7091	0.0048534	7.4125	0.0053623	723.4078354019505	35.506	0.072388	35.506	35.482	35.554	0	591	40	1.26753	0.02338636	1.26753	258.68945		4.772888	0.00048854	0.00061894	0.00075972	NaN	1.4396	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4673.1			20294	3540	11683	12029							0.02398770260197125
PPTAARAMSE	10	Unmodified	_PPTAARAMSE_					0	0	0		ENST00000524230.6_3_3:126373628-126373787:-|nuORF	ENST00000524230.6_3_3:126373628-126373787:-|nuORF	ENST00000524230.6_3_3:126373628-126373787:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7529411507	2	515.752941	1029.49133	1.984	0.0010233	2.0353	0.0010497	4.0193	0.002073	515.7540935874756	17.906	0.11996	17.892	17.844	17.964	-0.013786	1314	40	0.8283535	0.023997664	0.8268341	336.2286	0	9.740662						86	6	2	NaN	NaN	NaN	0.65442	1	9551	9551		11.17	0.56537	1	6925.3			20295	7414	11684	12030	16095	16095					-0.02223664330927022
PPTAARAMSE	10	Unmodified						0	0	0		ENST00000524230.6_3_3:126373628-126373787:-|nuORF	ENST00000524230.6_3_3:126373628-126373787:-|nuORF	ENST00000524230.6_3_3:126373628-126373787:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.752941	1029.49133	2.2963	0.0011843	3.9387	0.0020314	6.235	0.0032157	515.7554465652153	17.909	0.14392	17.909	17.861	18.005	0	1311	43	0.83019954	0.025839448	0.83019954	336.97787		10.48822	0.0084617	0.0012145	0.0016827	NaN	11.17	109	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8134.4			20296	7414	11684	12030							-0.02223664330927022
PPTEEEEDA	9	Unmodified	_PPTEEEEDA_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.70637650109995	2	508.706377	1015.3982	1.9803	0.0010074	-4.689	-0.0023853	-2.7087	-0.0013779	509.2062512639601	25.226	0.096523	25.226	25.226	25.322	0	1329	37	0.81912065	0.02216494	0.81912065	332.5419	0	8.998383						87	5	3	NaN	NaN	NaN	0.62619	1	9179	9179		4.4131	0	1	5187.1	+		20297	9030	11685	12031	16096	16096					-0.10888310303175786
PPTPAPAA	8	Unmodified	_PPTPAPAA_					0	0	0			REV__MYL3|p.A24T|1|0.22|ENSG00000160808|chr3:46863321-46863321|C/T|missense_variant	REV__MYL3|p.A24T|1|0.22|ENSG00000160808|chr3:46863321-46863321|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3879163984	1	721.387916	720.38064	0.95503	0.00068895	4.153	0.0029959	5.108	0.0036849	721.3909359789207	30.583	0.19301	30.577	30.529	30.722	-0.0057545	636	70	1.2405256	0.041433334	1.2390062	253.19135	0	8.456528						256	9	3	NaN	NaN	NaN	0.76633	1	3524	3524		13.737	2.6464	1	38441	+		20298	13075	11686	12032	16097	16097					0.009264837431260275
PPTPPPPYSAF	11	Unmodified	_PPTPPPPYSAF_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.86584677479993	3	390.865847	1169.57571	2.9878	0.0011678	-5.6857	-0.0022223	-2.6978	-0.0010545	391.1977945804424	13.997	0.024002	13.997	13.997	14.021	0	1533	16	0.6930556	0.009304225	0.6930556	421.29514	0	5.6558533						19	2	2	NaN	NaN	NaN	0.74155	1	15469	15469		1.8502	0	1	684.79			20299	4464	11687	12033	16098	16098					-0.00229390242543559
PPTPQAVI	8	Unmodified	_PPTPQAVI_					0	0	0		ENST00000607959.5_1_19:35761286-35770156:+|nuORF	ENST00000607959.5_1_19:35761286-35770156:+|nuORF	ENST00000607959.5_1_19:35761286-35770156:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.4719803788001	1	822.47198	821.464704	2.1331	0.0017544	0.32057	0.00026366	2.4537	0.0020181	822.4728000288543	27.543	0.024157	27.543	27.543	27.567	0	489	31	1.3285799	0.017919421	1.3285799	270.53967	0	3.6489868						36	2	2	NaN	NaN	NaN	0.84455	1	5036	5036		2.7852	0	1	2047.4			20300	7788	11688	12034	16099	16099					0.04683014840054511
PPTTLPGTHP	10	Unmodified	_PPTTLPGTHP_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.27182400810005	2	509.271824	1016.5291	2.0379	0.0010378	-11.208	-0.005708	-9.1702	-0.0046701	509.7677469258182	17.357	0.14382	17.357	17.285	17.429	0	1317	49	0.8265074	0.0295372	0.8265074	335.53574	0	11.99118						89	7	2	NaN	NaN	NaN	0.73444	1	9234	9234		5.6942	0.50528	1	7383.2			20301	3255	11689	12035	16100	16100					0.021491699262014663
PPVGGFSF	8	Unmodified	_PPVGGFSF_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4035664626001	1	807.403566	806.39629	1.8419	0.0014871	-1.3228	-0.0010681	0.51902	0.00041906	807.4025005430685	30.415	0.16893	30.415	30.366	30.535	0	600	100	1.2621325	0.059327245	1.2621325	257.08792	0	12.084534						272	8	3	NaN	NaN	NaN	0.50567	1	4839	4839		30.791	15.778	1	30271			20302	3057	11690	12036	16101	16101					-0.014652297398129122
PPVGGFSF	8	Unmodified	_PPVGGFSF_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4035664626001	1	807.403566	806.39629	1.5542	0.0012549	-1.5425	-0.0012455	0.011667	9.4201E-06	807.4028220657041	30.414	0.096518	30.407	30.359	30.456	-0.0064106	537	64	1.2998781	0.037697315	1.2983587	264.77643	0	7.6786804						86	5	2	NaN	NaN	NaN	0.77489	1	4744	4744		12.588	7.122	1	5577.7			20303	3057	11690	12036	16102	16102					-0.014652297398129122
PPVGGFSF	8	Unmodified	_PPVGGFSF_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4035664626001	1	807.403566	806.39629	1.2386	0.001	-0.18913	-0.0001527	1.0494	0.00084733	807.4032763291046	30.414	0.24129	30.407	30.335	30.576	-0.0064106	600	106	1.2621325	0.062922716	1.2606131	257.08792	0	12.81694						294	11	3	NaN	NaN	NaN	0.12449	1	4746	4746		59.445	41.411	1	42402			20304	3057	11690	12036	16103	16103					-0.014652297398129122
PPVGGGGC	8	Unmodified	_PPVGGGGC_					0	0	0		ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2868221453	1	643.286822	642.279546	1.6151	0.001039	7.1084	0.0045728	8.7235	0.0056117	643.2911078255519	34.71	0.21703	34.71	34.686	34.903	0	621	55	1.2495319	0.032417417	1.2495319	255.60757	0	6.6313934						203	10	2	NaN	NaN	NaN	0.84876	1	1775	1775		0.39566	0.39566	1	18982			20305	7403	11691	12037	16104	16104					-0.05590291231226274
PPVGGGGC	8	Unmodified						0	0	0		ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	643.286822	642.279546	1.8623	0.001198	7.7213	0.004967	9.5836	0.006165	643.2915109979796	34.733	0.14458	34.732	34.684	34.828	-0.0006485	618	61	1.2513325	0.03601551	1.2498131	255.97592		7.3674164	0.011017	0.00017416	0.00014062	NaN	0.39566	151	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17358			20306	7403	11691	12037							-0.05590291231226274
PPVPAAKG	8	Unmodified	_PPVPAAKG_					0	0	0		ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.435200942	1	736.435201	735.427924	1.182	0.00087046	-2.8852	-0.0021248	-1.7032	-0.0012543	736.4338214103702	27.036	0.096571	27.036	27.012	27.109	0	660	46	1.2261056	0.027044892	1.2261056	250.15266	0	5.517746						90	5	2	NaN	NaN	NaN	0.84876	1	3836	3836		0.39566	0.39566	1	7494.6			20307	5161	11692	12038	16105	16105					0.049627630141344525
PPVRIESH	8	Unmodified	_PPVRIESH_					0	0	0			REV__ZBTB45|p.V74M|1|0.4|ENSG00000119574|chr19:58517454-58517454|C/T|missense_variant	REV__ZBTB45|p.V74M|1|0.4|ENSG00000119574|chr19:58517454-58517454|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.75888380835	2	467.758884	933.503215	0.77903	0.0003644	3.5452	0.0016583	4.3242	0.0020227	467.76003759934525	26.336	0.28955	26.324	26.204	26.493	-0.011137	1347	97	0.8080346	0.059112847	0.8065152	328.42575	0	24.026398						574	13	3	NaN	NaN	NaN	0.72013	1	6549	6549		17.799	0.018654	1	85350	+		20308	9291	11693	12039	16106	16106					0.033803204745595394
PPVSLALL	8	Unmodified	_PPVSLALL_					0	0	0		ENST00000333646.10_2_X:70338483-70339224:+|nuORF	ENST00000333646.10_2_X:70338483-70339224:+|nuORF	ENST00000333646.10_2_X:70338483-70339224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.5131169120001	1	809.513117	808.50584	2.4542	0.0019867	-12.097	-0.009793	-9.6432	-0.0078063	809.504730932607	57.069	0.048126	57.069	57.069	57.117	0	420	46	1.3697531	0.026826382	1.3697531	278.99738	0	5.464081						38	3	2	NaN	NaN	NaN	0.84207	1	4874	4874		3.5732	1.9029	1	1824			20309	6514	11694	12040	16107	16107					0.09392775879518922
PPVSLISAL	9	Unmodified	_PPVSLISAL_					0	0	0		ENSG00000153234|ENST00000339562|NR4A2;NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant;nc|ENSG00000153234|P43354-2|NR4A2	ENSG00000153234|ENST00000339562|NR4A2	ENSG00000153234|ENST00000339562|NR4A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5451453219001	1	896.545145	895.537869	1.1203	0.0010044	1.3749	0.0012327	2.4953	0.0022371	896.5469777340975	41.714	0.14431	41.714	41.642	41.786	0	327	58	1.425088	0.033860803	1.425088	289.79654	0	6.8857117						143	7	2	NaN	NaN	NaN	0.39244	1	6003	6003		14.042	3.4366	1	10340			20310	3803	11695	12041	16108	16108					0.08592143562668753
PQAAEAALP	9	Unmodified	_PQAAEAALP_					0	0	0			REV__ENST00000570718.5_1_17:4618488-4619298:+|nuORF	REV__ENST00000570718.5_1_17:4618488-4619298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.4570585961	1	867.457059	866.449782	1.9307	0.0016748	-1.7652	-0.0015312	0.16545	0.00014352	867.4547785447747	19.06	0.09594	19.06	19.036	19.132	0	465	46	1.3429124	0.026863575	1.3429124	273.22458	0	5.465576						80	5	2	NaN	NaN	NaN	0.27608	1	5622	5622		20.449	0	1	4780.9	+		20311	12823	11696	12042	16109	16109					0.011215229720392017
PQAEPLNAI	9	Unmodified	_PQAEPLNAI_					0	0	0			REV__nc|ENSG00000162843|B1ANS9|WDR64	REV__nc|ENSG00000162843|B1ANS9|WDR64	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.5098224481	1	952.509822	951.502546	1.6574	0.0015786	6.1601	0.0058676	7.8175	0.0074462	952.5157670588358	34.421	0.072384	34.421	34.421	34.493	0	225	43	1.4855686	0.024858832	1.4855686	301.82642	0	5.0506287						70	4	2	NaN	NaN	NaN	0.48181	1	7131	7131		10.36	1.3982	1	4571.5	+		20312	10257	11697	12043	16110	16110					0.024854810348415413
PQAEPLNAI	9	Unmodified						0	0	0			REV__nc|ENSG00000162843|B1ANS9|WDR64	REV__nc|ENSG00000162843|B1ANS9|WDR64	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	952.509822	951.502546	1.6574	0.0015786	6.1601	0.0058676	7.8175	0.0074462	952.5157670588358	34.421	0.072384	34.421	34.421	34.493	0	225	43	1.4855686	0.024858832	1.4855686	301.82642		5.0506287	0.0009477	-0.00081933	-0.00012805	NaN	10.36	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4571.5	+		20313	10257	11697	12043							0.024854810348415413
PQAEPLNAI	9	Unmodified						0	0	0			REV__nc|ENSG00000162843|B1ANS9|WDR64	REV__nc|ENSG00000162843|B1ANS9|WDR64	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	952.509822	951.502546	1.8681	0.0017794	8.8749	0.0084535	10.743	0.010233	952.5193137339493	34.419	0.072319	34.419	34.395	34.467	-0.00064468	222	37	1.4873441	0.021303058	1.4858247	302.18716		4.328186	-0.0009477	0.0017666	0.00012805	NaN	10.36	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3757.6	+		20314	10257	11697	12043							0.024854810348415413
PQAFAPAN	8	Unmodified	_PQAFAPAN_					0	0	0			REV__ENSG00000081842|ENST00000529310|PCDHA6;REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.20595278084994	2	408.205953	814.397353	1.7863	0.00072918	-4.1321	-0.0016867	-2.3458	-0.00095757	408.20467719206005	35.842	0.0723	35.843	35.819	35.891	0.00053024	1461	28	0.7376554	0.016704082	0.73613596	300.45532	0	6.8037415						44	4	2	NaN	NaN	NaN	0.84887	1	4837	4837		0.32989	0	1	2552.8	+		20315	8665;11364	11698	12044	16111	16111					-0.01727015370920526
PQCFKNTKRQ	10	Unmodified	_PQCFKNTKRQ_					0	0	0		ENST00000367066.7_1_6:159465043-159465931:-|nuORF	ENST00000367066.7_1_6:159465043-159465931:-|nuORF	ENST00000367066.7_1_6:159465043-159465931:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.22051811323337	3	417.220518	1248.63972	2.2821	0.00095213	-5.0882	-0.0021229	-2.8062	-0.0011708	417.21762575856275	25.805	0.048286	25.793	25.769	25.817	-0.0116	1500	34	0.71351165	0.02044487	0.7119922	433.41016	0	12.418884						52	3	3	NaN	NaN	NaN	0.68669	1	16998	16998		4.6175	0	1	4355.2			20316	6619	11699	12045	16112	16112					0.02535066642781203
PQDLPLLLL	9	Unmodified	_PQDLPLLLL_					0	0	0		ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.6292093023002	1	1021.62921	1020.62193	2.1603	0.002207	-0.57558	-0.00058803	1.5847	0.001619	1021.6286211864843	32.514	0.12063	32.514	32.466	32.587	0	186	70	1.5086359	0.04077673	1.5086359	306.2167	0	8.276703						201	6	3	NaN	NaN	NaN	0.048656	1	9416	9416		47.482	1.655	1	32247			20317	6872	11700	12046	16113	16113					0.11244674659576503
PQDLPLLLL	9	Unmodified	_PQDLPLLLL_					0	0	0		ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	ENST00000413209.6_1_22:30090794-30090923:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.31824288445006	2	511.318243	1020.62193	0.83268	0.00042576	-1.0372	-0.00053031	-0.20447	-0.00010455	511.317778287369	32.489	0.07246	32.486	32.462	32.534	-0.0031013	1284	43	0.8468043	0.025817096	0.8452849	343.7572	0	10.480347						97	4	3	NaN	NaN	NaN	0.25548	1	9223	9223		21.771	0	1	8636.3			20318	6872	11700	12046	16114	16114					0.11244674659576503
PQDNNYWERS	10	Unmodified	_PQDNNYWERS_					0	0	0			REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.78381546765	2	654.783815	1307.55308	1.2828	0.00083998	-5.305	-0.0034736	-4.0221	-0.0026336	654.7817029931763	21.585	0.072304	21.585	21.585	21.657	0	1155	49	0.92591566	0.029362142	0.92591566	374.77267	0	11.884613						102	4	3	NaN	NaN	NaN	0.77594	1	18884	18884		1.5054	0	1	15671	+		20319	11522	11701	12047	16115	16115					-0.08839641378108354
PQDNNYWERS	10	Unmodified						0	0	0			REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.783815	1307.55308	1.2828	0.00083998	-5.305	-0.0034736	-4.0221	-0.0026336	654.7817029931763	21.585	0.072304	21.585	21.585	21.657	0	1155	49	0.92591566	0.029362142	0.92591566	374.77267		11.884613	0.0069162	0.001785	-0.000158	NaN	1.5054	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15671	+		20320	11522	11701	12047							-0.08839641378108354
PQDNNYWERS	10	Unmodified						0	0	0			REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	REV__ENST00000256190.12_1_11:9801262-9801454:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	654.783815	1307.55308	1.1095	0.00072646	-8.0046	-0.0052413	-6.8951	-0.0045148	655.2810688425035	21.585	0.096331	21.571	21.523	21.619	-0.013895	1152	52	0.92775106	0.031195581	0.9262317	375.5156		12.626709	-0.0069162	-0.0017504	0.000158	NaN	1.5054	101	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13750	+		20321	11522	11701	12047							-0.08839641378108354
PQDPGLPE	8	Unmodified	_PQDPGLPE_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4097740525001	1	852.409774	851.402498	1.2484	0.0010642	4.3625	0.0037187	5.611	0.0047828	852.4134508397497	30.801	0.2413	30.801	30.728	30.97	0	450	70	1.3518641	0.04117322	1.3518641	275.12173	0	8.379272						267	11	2	NaN	NaN	NaN	0.78264	1	5402	5402		11.548	1.4969	1	35888			20322	307	11702	12048	16116	16116					-0.02914756298946486
PQDPQALA	8	Unmodified	_PQDPQALA_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.21651746714997	2	420.216517	838.418482	1.2455	0.00052338	-1.7298	-0.00072689	-0.48428	-0.0002035	420.21571618404965	21.489	0.16865	21.475	21.45	21.619	-0.014006	1332	91	0.8172735	0.055460215	0.81575406	332.72678	0	22.578888						286	8	4	NaN	NaN	NaN	0.78967	1	5117	5117		10.605	1.4818	1	41912			20323	4115	11703	12049	16117	16117					-0.007190500620481544
PQDPQALA	8	Unmodified						0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	420.216517	838.418482	1.5371	0.00064592	-1.8851	-0.00079216	-0.34801	-0.00014624	420.2156732842989	21.488	0.19285	21.488	21.44	21.633	0	1329	91	0.81912065	0.055460215	0.81912065	333.4788		22.578888	0.006982	-6.5071E-05	0.0016833	NaN	10.605	270	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39000			20324	4115	11703	12049							-0.007190500620481544
PQEGVSLCSP	10	Unmodified	_PQEGVSLCSP_					0	0	0			REV__BRD9|p.R569C|1|0.21|ENSG00000028310|chr5:864557-864557|G/A|missense_variant	REV__BRD9|p.R569C|1|0.21|ENSG00000028310|chr5:864557-864557|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.73949942444995	2	508.739499	1015.46445	1.662	0.00084552	-1.5818	-0.00080474	0.080161	4.0781E-05	508.73896104469696	13.012	0.31226	13.012	12.892	13.204	0	1314	73	0.8283535	0.044320166	0.8283535	336.28992	0	17.992828						659	14	4	NaN	NaN	NaN	0.66626	1	9184	9184		10.36	1.3982	1	142450	+		20325	8166	11704	12050	16118	16118					-0.042667729421282274
PQERGFMA	8	Unmodified	_PQERGFMA_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.22381957050004	2	468.22382	934.433086	0.24575	0.00011507	4.4752	0.0020954	4.721	0.0022105	468.22707303363427	28.676	0.12066	28.668	28.62	28.74	-0.0083504	1332	43	0.8172735	0.025858998	0.81575406	332.1761	0	10.510254						112	6	3	NaN	NaN	NaN	0.75561	1	6569	6569		15.175	2.5875	1	11159			20326	567	11705	12051	16119	16119					-0.036753011855466866
PQFTDNTI	8	Unmodified	_PQFTDNTI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.22708215345	2	468.227082	934.439611	1.0944	0.00051241	-4.979	-0.0023313	-3.8847	-0.0018189	468.22477672443887	28.677	0.072367	28.677	28.653	28.725	0	1332	43	0.8172735	0.02586186	0.8172735	332.1761	0	10.511414						72	4	2	NaN	NaN	NaN	0.67765	1	6710	6710		20.449	1.3303	1	11549	+		20327	9131	11706	12052	16120	16120					-0.030230847531811378
PQFTDNTI	8	Unmodified						0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	468.227082	934.439611	1.0944	0.00051241	-4.979	-0.0023313	-3.8847	-0.0018189	468.22477672443887	28.677	0.072367	28.677	28.653	28.725	0	1332	43	0.8172735	0.02586186	0.8172735	332.1761		10.511414	0.0045442	-0.00085865	0.00075972	NaN	20.449	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11549	+		20328	9131	11706	12052							-0.030230847531811378
PQGAPVHF	8	Unmodified	_PQGAPVHF_					0	0	0			REV__HPDL|p.I312Sfs*3|1|0.23|ENSG00000186603|chr1:45328078-45328078|G/-|frameshift_variant	REV__HPDL|p.I312Sfs*3|1|0.23|ENSG00000186603|chr1:45328078-45328078|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.72177002055	2	426.72177	851.428987	1.5807	0.0006745	2.6932	0.0011493	4.2739	0.0018238	426.72286407842114	16.71	0.14397	16.71	16.638	16.782	0	1422	37	0.7617651	0.022237062	0.7617651	310.05206	0	9.050873						80	7	2	NaN	NaN	NaN	0.84207	1	5406	5406		3.5732	0	1	5880.5	+		20329	11005	11707	12053	16121	16121					-0.0026702261695845664
PQGPGGGD	8	Unmodified	_PQGPGGGD_					0	0	0			REV__ENST00000564575.5_1_15:34846105-34875766:-|nuORF	REV__ENST00000564575.5_1_15:34846105-34875766:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.2947442947	1	684.294744	683.287468	2.2481	0.0015384	-4.9885	-0.0034136	-2.7404	-0.0018752	684.2925311186381	14.741	0.048033	14.741	14.693	14.741	0	1128	22	0.9424274	0.012836933	0.9424274	192.54431	0	2.6226807						26	3	2	NaN	NaN	NaN	0.84945	1	2900	2900		0	0	1	1216.7	+		20330	12796	11708	12054	16122	16122					-0.0668444071010299
PQGPGRLLN	9	Unmodified	_PQGPGRLLN_					0	0	0			REV__ENST00000549114.5_1_16:779452-779698:+|nuORF	REV__ENST00000549114.5_1_16:779452-779698:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.2721583591	2	476.272158	950.529764	1.5105	0.00071941	-11.078	-0.0052764	-9.5679	-0.0045569	476.26601657949857	24.912	0.072409	24.912	24.888	24.96	0	1323	31	0.8228144	0.018464744	0.8228144	334.34613	0	7.5030212						51	4	2	NaN	NaN	NaN	0.55027	1	7103	7103		7.5404	0	1	3924.4	+		20331	12730	11709	12055	16123	16123					0.05252009365892718
PQGPSGVH	8	Unmodified	_PQGPSGVH_					0	0	0		ENST00000493216.1_1_22:20939162-20939420:+|nuORF	ENST00000493216.1_1_22:20939162-20939420:+|nuORF	ENST00000493216.1_1_22:20939162-20939420:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.6957522353	2	389.695752	777.376952	-0.4377	-0.00017057	-1.1832	-0.00046108	-1.6209	-0.00063165	389.6949344212643	55.122	0.1201	55.121	55.073	55.193	-0.0006218	1470	40	0.7320868	0.024133325	0.73056734	298.422	0	9.837494						118	6	3	NaN	NaN	NaN	0.8439	1	4379	4379		3.1533	1.483	1	18063			20332	7273	11710	12056	16124	16124					-0.020641860307136994
PQGQQHTP	8	Unmodified	_PQGQQHTP_					0	0	0			REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF	REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.7172159589	2	446.717216	891.419879	0.8204	0.00036649	1.1037	0.00049306	1.9241	0.00085955	446.71898661656587	35.07	0.16891	35.07	34.974	35.143	-4.5776E-05	1416	73	0.76547134	0.04448855	0.7639519	311.33887	0	18.094757						352	8	4	NaN	NaN	NaN	0.83913	1	5825	5825		3.9685	0.81517	1	42416	+		20333	8418	11711	12057	16125	16125					-0.030174159732837325
PQHPPHFLQY	10	Unmodified	_PQHPPHFLQY_					0	0	0		ENST00000380441.5_1_6:3000237-3004829:+|nuORF	ENST00000380441.5_1_6:3000237-3004829:+|nuORF	ENST00000380441.5_1_6:3000237-3004829:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3170971790001	2	632.317097	1262.61964	1.5035	0.00095069	7.9596	0.005033	9.4631	0.0059837	632.8240365862945	23.971	0.14474	23.958	23.91	24.054	-0.01305	1131	43	0.94059354	0.025675297	0.93907416	380.85526	0	10.396149						190	7	3	NaN	NaN	NaN	0.68669	1	17271	17271		8.962	1.9776	1	27164			20334	6733	11712	12058	16126	16126					-0.0011636102551619842
PQHQYQEMW	9	Unmodified	_PQHQYQEMW_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.7691225311501	2	623.769123	1245.52369	3.5255	0.0021991	-0.19025	-0.00011867	3.3353	0.0020804	624.2683677577459	5.174	0.047889	5.174	5.174	5.2219	0	1377	28	0.7895419	0.016653419	0.7895419	319.74048	0	6.74411						22	3	2	NaN	NaN	NaN	0.68801	1	17643	17643		0.23014	0	1	1117.9	+		20335	10793	11713	12059	16127	16127					-0.08924876927926562
PQKNSNLL	8	Unmodified	_PQKNSNLL_					0	0	0		DCC|p.V1100L|1|0.07|ENSG00000187323|chr18:53450568-53450568|G/T|missense_variant;ROCK1-DCC|1|fusion;ENSG00000187323|ENST00000442544|DCC	DCC|p.V1100L|1|0.07|ENSG00000187323|chr18:53450568-53450568|G/T|missense_variant	DCC|p.V1100L|1|0.07|ENSG00000187323|chr18:53450568-53450568|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.5101567991002	1	913.510157	912.50288	1.1504	0.0010509	-1.0358	-0.00094624	0.11452	0.00010462	913.5108098136309	41.329	0.16851	41.329	41.329	41.498	0	399	70	1.382264	0.041098595	1.382264	281.00903	0	8.355194						179	8	2	NaN	NaN	NaN	0.82797	1	6282	6282		5.4659	0	1	19613			20336	247	11714	12060	16128	16128					0.04312900754723614
PQLGKLLNQ	9	Unmodified	_PQLGKLLNQ_					0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.80329131200006	2	505.803291	1009.59203	1.4056	0.00071094	0.54348	0.0002749	1.949	0.00098583	505.80479617268963	27.181	0.096521	27.181	27.157	27.253	0	1257	64	0.86339295	0.03870684	0.86339295	350.54224	0	15.715149						125	5	3	NaN	NaN	NaN	0.39244	1	8974	8974		14.042	0.30454	1	11791	+		20337	10153	11715	12061	16129	16129					0.0876173571423351
PQLGKLLNQ	9	Unmodified						0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	505.803291	1009.59203	1.4056	0.00071094	0.54348	0.0002749	1.949	0.00098583	505.80479617268963	27.181	0.096521	27.181	27.157	27.253	0	1257	64	0.86339295	0.03870684	0.86339295	350.54224		15.715149	-0.018686	-0.00091543	0.00075972	NaN	14.042	125	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11791	+		20338	10153	11715	12061							0.0876173571423351
PQLGKLLNQ	9	Unmodified						0	0	0			REV__ENSG00000157741|ENST00000473989|UBN2	REV__ENSG00000157741|ENST00000473989|UBN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	505.803291	1009.59203	1.0438	0.00052798	2.3557	0.0011915	3.3995	0.0017195	505.80597661187124	27.228	0.12065	27.218	27.194	27.315	-0.010124	1257	67	0.86339295	0.040543437	0.8618735	350.5422		16.460846	0.018686	0.00091777	-0.00075972	NaN	14.042	112	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9571.2	+		20339	10153	11715	12061							0.0876173571423351
PQLLELLGL	9	Unmodified	_PQLLELLGL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.31041785235	2	498.310418	994.606283	1.7118	0.00085301	-2.3356	-0.0011639	-0.62382	-0.00031086	498.30919863877074	34.541	0.16891	34.541	34.469	34.638	0	1287	61	0.8449601	0.03689754	0.8449601	343.1279	0	14.983643						234	8	3	NaN	NaN	NaN	0.2961	1	8379	8379		19.164	1.3646	1	23922	+		20340	10355	11716	12062	16130	16130					0.1087638814251477
PQLLELLGL	9	Unmodified	_PQLLELLGL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.6135592381	1	995.613559	994.606283	1.5188	0.0015122	0.77901	0.00077559	2.2979	0.0022878	995.6140808172266	34.54	0.24117	34.539	34.419	34.66	-0.00064468	180	79	1.5121819	0.046092987	1.5106624	307.04346	0	9.359039						397	11	3	NaN	NaN	NaN	0.055351	1	8216	8216		44.638	4.4847	1	72460	+		20341	10355	11716	12062	16131	16131					0.1087638814251477
PQMASSKN	8	Unmodified	_PQMASSKN_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.7080023308	2	431.708002	861.401452	1.3176	0.00056883	2.8937	0.0012492	4.2113	0.0018181	431.7095255374458	26.963	0.096565	26.952	26.928	27.025	-0.010645	1365	37	0.7969414	0.02219367	0.79542196	324.30988	0	9.031586						59	5	2	NaN	NaN	NaN	0.83211	1	5412	5412		4.9097	0	1	4196.8			20342	2467	11717	12063	16132	16132					-0.0347929393949471
PQNALIQVM	9	Unmodified	_PQNALIQVM_					0	0	0			REV__ENST00000554990.5_1_14:50911905-50914156:-|nuORF	REV__ENST00000554990.5_1_14:50911905-50914156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5448277459001	1	1013.54483	1012.53755	2.1914	0.0022211	-7.8956	-0.0080026	-5.7043	-0.0057815	1013.5368743399227	30.077	0.16899	30.077	30.053	30.222	0	153	79	1.5281296	0.04606867	1.5281296	310.2065	0	9.351807						133	8	2	NaN	NaN	NaN	0.47587	1	9085	9085		10.605	0.85897	1	15676	+		20343	12760	11718	12064	16133	16133					0.03178400571152906
PQPDVESDPE	10	Unmodified	_PQPDVESDPE_					0	0	0			REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.7407506347	2	556.740751	1111.46695	1.2792	0.00071219	-3.4595	-0.0019261	-2.1803	-0.0012139	557.2397166560316	34.3	0.21702	34.3	34.228	34.445	0	1275	85	0.85233563	0.051606297	0.85233563	345.6261	0	20.926605						479	10	4	NaN	NaN	NaN	0.12158	1	13325	13325		42.995	3.536	1	58322	+		20344	12842	11719	12065	16134	16134					-0.08432646003461741
PQPDVESDPE	10	Unmodified						0	0	0			REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.740751	1111.46695	1.2792	0.00071219	-3.4595	-0.0019261	-2.1803	-0.0012139	557.2397166560316	34.3	0.21702	34.3	34.228	34.445	0	1275	85	0.85233563	0.051606297	0.85233563	345.6261		20.926605	0.001175	1.575E-05	-0.00016197	NaN	42.995	479	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58322	+		20345	12842	11719	12065							-0.08432646003461741
PQPDVESDPE	10	Unmodified						0	0	0			REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.740751	1111.46695	1.1522	0.00064149	-3.4912	-0.0019437	-2.3389	-0.0013022	557.2392714243041	34.299	0.19274	34.298	34.225	34.418	-0.0012474	1272	88	0.854179	0.05344075	0.8526596	346.3736		21.670471	-0.001175	-1.9496E-05	0.00016197	NaN	42.995	471	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55026	+		20346	12842	11719	12065							-0.08432646003461741
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.27911772395	2	530.279118	1058.54368	1.7253	0.00091488	-1.7953	-0.00095202	-0.070043	-3.7142E-05	530.2780256889009	34.3	0.21701	34.3	34.252	34.469	0	1257	97	0.86339295	0.058984995	0.86339295	350.3242	0	23.93335						554	10	3	NaN	NaN	NaN	0.16939	1	11029	11029		27.296	6.3437	1	144780			20347	6189	11720	12066	16135	16135					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.5509589812998	1	1059.55096	1058.54368	2.2836	0.0024196	0.46304	0.00049061	2.7467	0.0029102	1059.5522830260823	34.3	0.33767	34.3	34.228	34.565	0	138	214	1.5369828	0.12576973	1.5369828	311.8214	0	25.516022						1577	15	6	NaN	NaN	NaN	2.4698E-12	1	11031	11031		151.71	87.949	1	666670			20348	6189	11720	12066	16136	16136					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.5509589812998	1	1059.55096	1058.54368	1.095	0.0011602	2.5392	0.0026905	3.6343	0.0038507	1059.5549412166213	35.361	0.096504	35.361	35.337	35.434	0	138	136	1.5369828	0.07965398	1.5369828	311.8214	0	16.160095						271	5	3	NaN	NaN	NaN	0.097143	1	11033	11033		36.235	11.673	1	20768			20349	6189	11720	12066	16137	16137					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.27911772395	2	530.279118	1058.54368	0.9941	0.00052715	-1.4797	-0.00078466	-0.4856	-0.00025751	530.2783381009937	34.299	0.31338	34.298	34.177	34.49	-0.0012474	1254	100	0.8652351	0.06082499	0.86371565	351.07166	0	24.679932						691	14	4	NaN	NaN	NaN	0.070055	1	10791	10791		40.154	22.355	1	157890			20350	6189	11720	12066	16138	16138					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.5509589812998	1	1059.55096	1058.54368	2.0379	0.0021592	0.8	0.00084764	2.8379	0.0030069	1059.5520384354945	34.299	0.33747	34.298	34.225	34.563	-0.0012474	135	199	1.5387528	0.11685681	1.5372335	312.1805	0	23.707794						1469	15	4	NaN	NaN	NaN	0.00015011	1	10792	10792		119.86	77.541	1	662710			20351	6189	11720	12066	16139	16139					0.016752420743159746
PQQPTSTLF	9	Unmodified	_PQQPTSTLF_					0	0	0			REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF	REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5203871344002	1	1018.52039	1017.51311	2.4225	0.0024674	-12.037	-0.01226	-9.6147	-0.0097928	1018.5069747729206	29.763	0.072392	29.763	29.739	29.811	0	234	46	1.4802408	0.02664435	1.4802408	300.46548	0	5.408386						82	4	2	NaN	NaN	NaN	0.38313	1	9263	9263		14.425	1.8371	1	9246.7	+		20352	11705	11721	12067	16140	16140					0.005054636892964481
PQSGAPEM	8	Unmodified	_PQSGAPEM_					0	0	0			REV__ENST00000424436.1_1_22:39488108-39488848:+|nuORF	REV__ENST00000424436.1_1_22:39488108-39488848:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	816.3556299920001	1	816.35563	815.348354	1.3022	0.0010631	0.88349	0.00072124	2.1857	0.0017843	816.3560986212419	28.218	0.19307	28.209	28.161	28.354	-0.0089779	540	49	1.2980826	0.028729439	1.2965631	264.3621	0	5.850891						186	9	2	NaN	NaN	NaN	0.80071	1	4852	4852		9.1232	0	1	19502	+		20353	12123	11722	12068	16141	16141					-0.06670671722156385
PQSGGVKQ	8	Unmodified	_PQSGGVKQ_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.71668464265	2	400.716685	799.418816	-0.33653	-0.00013485	2.3553	0.00094379	2.0187	0.00080894	400.7176540287865	53.672	0.29811	53.671	53.623	53.921	-0.00059128	1356	70	0.8024889	0.042540252	0.8009695	326.964	0	17.332489						413	12	4	NaN	NaN	NaN	0.84727	1	4652	4652		1.2418	0	1	117280	+		20354	8847	11723	12069	16142	16142					0.011083696578111812
PQSSYPLLA	9	Unmodified	_PQSSYPLLA_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3;nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.26092497080003	2	488.260925	974.507297	2.1191	0.0010347	0.72693	0.00035493	2.8461	0.0013896	488.2612973667144	18.844	0.096041	18.844	18.796	18.892	0	1317	61	0.8265074	0.036913514	0.8265074	335.72888	0	14.994324						155	5	3	NaN	NaN	NaN	0.62619	1	7741	7741		4.4131	0	1	13818			20355	569	11724	12070	16143	16143					0.019023651776251427
PQSWQESCY	9	Unmodified	_PQSWQESCY_					0	0	0			REV__ENST00000402703.6_1_14:37131094-37132119:+|nuORF	REV__ENST00000402703.6_1_14:37131094-37132119:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.22675618995	2	564.226756	1126.43896	1.3416	0.00075695	-11.191	-0.0063143	-9.8496	-0.0055574	564.2209415424908	24.26	0.14484	24.248	24.199	24.344	-0.012749	1281	85	0.84864825	0.051600754	0.8471288	344.07486	0	20.920929						311	7	3	NaN	NaN	NaN	0.49672	1	13502	13502		9.746	0.13435	1	44296	+		20356	12042	11725	12071	16144	16144					-0.11920247464558997
PQSWQESCY	9	Unmodified						0	0	0			REV__ENST00000402703.6_1_14:37131094-37132119:+|nuORF	REV__ENST00000402703.6_1_14:37131094-37132119:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.226756	1126.43896	1.3416	0.00075695	-11.191	-0.0063143	-9.8496	-0.0055574	564.2209415424908	24.26	0.14484	24.248	24.199	24.344	-0.012749	1281	85	0.84864825	0.051600754	0.8471288	344.07486		20.920929	0.0055329	0.00024072	0.00016227	NaN	9.746	311	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44296	+		20357	12042	11725	12071							-0.11920247464558997
PQTGGGGEM	9	Unmodified	_PQTGGGGEM_					0	0	0			REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.3457935872001	1	833.345794	832.338517	1.1184	0.00093198	4.9305	0.0041088	6.0488	0.0050408	833.3497226696667	28.701	0.24131	28.692	28.644	28.885	-0.0083504	510	124	1.316029	0.07353675	1.3145095	267.92627	0	14.9711						596	11	2	NaN	NaN	NaN	0.33629	1	5049	5049		16.584	0.16752	1	78420	+		20358	12315	11726	12072	16145	16145					-0.08435859727535444
PQTGGGGEM	9	Unmodified						0	0	0			REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	REV__ENST00000468403.1_1_1:153751697-153752222:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	833.345794	832.338517	1.1184	0.00093198	4.9305	0.0041088	6.0488	0.0050408	833.3497226696667	28.701	0.24131	28.692	28.644	28.885	-0.0083504	510	124	1.316029	0.07353675	1.3145095	267.92627		14.9711	-0.0045432	0.00014609	-0.0016565	NaN	16.584	596	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78420	+		20359	12315	11726	12072							-0.08435859727535444
PQTMIPLIYDV	11	Unmodified	_PQTMIPLIYDV_					0	0	0			REV__nc|ENSG00000135541|Q8N157-3|AHI1	REV__nc|ENSG00000135541|Q8N157-3|AHI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.56517993650004	3	430.56518	1288.67371	1.2281	0.00052878	4.2273	0.0018201	5.4554	0.0023489	430.56673743238093	20.381	0.096392	20.367	20.319	20.415	-0.014141	1416	40	0.76547134	0.024086237	0.7639519	464.81436	0	14.625793						92	5	2	NaN	NaN	NaN	0.62211	1	17747	17747		6.3563	0	1	7824.8	+		20360	9624	11727	12073	16146	16146					0.04092050291160376
PQTRHLSPE	9	Unmodified	_PQTRHLSPE_					0	0	0			REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5483332194	1	1064.54833	1063.54106	1.0873	0.0011575	-9.158	-0.0097491	-8.0707	-0.0085916	1064.540427877859	34.251	0.16867	34.249	34.225	34.394	-0.0012474	111	91	1.5529068	0.053049088	1.5513873	315.03305	0	10.761902						235	8	2	NaN	NaN	NaN	0.49672	1	11021	11021		9.746	2.1584	1	21839	+		20361	12321	11728	12074	16147	16147					0.011827866693920441
PQTRHLSPE	9	Unmodified						0	0	0			REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1064.54833	1063.54106	1.5169	0.0016148	-15.325	-0.016314	-13.808	-0.014699	1064.5326314091426	34.252	0.048248	34.252	34.228	34.276	0	111	79	1.5529068	0.045971036	1.5529068	315.03308		9.325989	0.001177	-0.001948	0.00075972	NaN	9.746	131	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13670	+		20362	12321	11728	12074							0.011827866693920441
PQTRHLSPE	9	Unmodified						0	0	0			REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	REV__ENST00000470206.1_1_X:47429390-47430982:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1064.54833	1063.54106	1.0873	0.0011575	-9.158	-0.0097491	-8.0707	-0.0085916	1064.540427877859	34.251	0.16867	34.249	34.225	34.394	-0.0012474	111	91	1.5529068	0.053049088	1.5513873	315.03305		10.761902	-0.001177	0.0046168	-0.00075972	NaN	9.746	235	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21839	+		20363	12321	11728	12074							0.011827866693920441
PQVESMHELF	10	Unmodified	_PQVESMHELF_					0	0	0			REV__nc|ENSG00000160695|Q9H270|VPS11	REV__nc|ENSG00000160695|Q9H270|VPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.7869809333	2	608.786981	1215.55941	0.48731	0.00029666	0.77665	0.00047282	1.264	0.00076948	609.2880322813721	31.258	0.19306	31.253	31.205	31.398	-0.0050716	1116	85	0.94976085	0.05136162	0.9482414	384.7282	0	20.805511						252	9	4	NaN	NaN	NaN	0.5917	1	16196	16196		15.463	1.9996	1	27437	+		20364	10209	11729	12075	16148	16148					-0.039748394709477
PQVKARVG	8	Unmodified	_PQVKARVG_					0	0	0			REV__ENSG00000120054|ENST00000370418|CPN1	REV__ENSG00000120054|ENST00000370418|CPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.76396918625005	2	427.763969	853.513385	1.0996	0.00047036	-1.7315	-0.00074069	-0.63195	-0.00027032	427.7632176370197	13.949	0.1439	13.938	13.914	14.058	-0.010672	1500	52	0.71351165	0.031603515	0.7119922	290.4008	0	12.862671						116	7	3	NaN	NaN	NaN	0.62311	1	5304	5304		23.85	4.5657	1	12057	+		20365	9306	11730	12076	16149	16149					0.08076928199807298
PQVKARVG	8	Unmodified						0	0	0			REV__ENSG00000120054|ENST00000370418|CPN1	REV__ENSG00000120054|ENST00000370418|CPN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	427.763969	853.513385	1.7768	0.00076005	-3.4932	-0.0014943	-1.7164	-0.00073422	427.7626340011687	13.925	0.095992	13.925	13.901	13.997	0	1500	49	0.71351165	0.029742837	0.71351165	290.4008		12.105408	-0.0066544	-0.00097337	0.00075972	NaN	23.85	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12055	+		20366	9306	11730	12076							0.08076928199807298
PQVKARVG	8	Unmodified						0	0	0			REV__ENSG00000120054|ENST00000370418|CPN1	REV__ENSG00000120054|ENST00000370418|CPN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	427.763969	853.513385	1.0996	0.00047036	-1.7315	-0.00074069	-0.63195	-0.00027032	427.7632176370197	13.949	0.1439	13.938	13.914	14.058	-0.010672	1500	52	0.71351165	0.031603515	0.7119922	290.4008		12.862671	0.0066544	0.00053378	-0.00075972	NaN	23.85	116	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12057	+		20367	9306	11730	12076							0.08076928199807298
PQVPAGAG	8	Unmodified	_PQVPAGAG_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3675153073001	1	696.367515	695.360239	0.82075	0.00057154	0.25911	0.00018044	1.0799	0.00075198	696.3687207367201	27.759	0.096521	27.75	27.702	27.798	-0.009552	1056	61	0.9863805	0.036568403	0.9848611	201.45549	0	7.4686127						120	5	2	NaN	NaN	NaN	0.82332	1	3085	3085		6.0903	2.5171	1	10443			20368	1089	11731	12077	16150	16150					0.00037313083339540754
PRALAGWL	8	Unmodified	_PRALAGWL_					0	0	0		nc|ENSG00000157017|Q9UBU3-6|GHRL;nc|ENSG00000157017|Q9UBU3-4|GHRL;nc|ENSG00000157017|Q9UBU3-3|GHRL;nc|ENSG00000157017|Q9UBU3-2|GHRL;ENSG00000157017|ENST00000335542|GHRL	nc|ENSG00000157017|Q9UBU3-6|GHRL	nc|ENSG00000157017|Q9UBU3-6|GHRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.26106235655	2	442.261062	882.507572	0.74834	0.00033096	-5.0704	-0.0022425	-4.3221	-0.0019115	442.25859273661996	12.436	0.14389	12.436	12.388	12.532	0	1503	46	0.711653	0.027885437	0.711653	289.49377	0	11.343536						102	7	2	NaN	NaN	NaN	0.82332	1	5836	5836		6.0903	0	1	9098.8			20369	3939	11732	12078	16151	16151					0.06161829688130638
PRANYTGQIV	10	Unmodified	_PRANYTGQIV_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.53661211506665	3	373.536612	1117.58801	1.904	0.00071123	1.5866	0.00059267	3.4907	0.0013039	373.5370170528598	17.669	0.11991	17.669	17.621	17.741	0	1551	37	0.6818875	0.022343516	0.6818875	414.7305	0	13.589539						99	6	3	NaN	NaN	NaN	0.5358	1	13585	13585		14.45	0	1	7666.4			20370	4301	11733	12079	16152	16152					0.033916462205070275
PRAPDRVTSI	10	Unmodified	_PRAPDRVTSI_					0	0	0		ENST00000477979.5_1_10:102823973-102824042:+|nuORF	ENST00000477979.5_1_10:102823973-102824042:+|nuORF	ENST00000477979.5_1_10:102823973-102824042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3145544900501	2	556.314554	1110.61456	1.7712	0.00098537	-8.9886	-0.0050005	-7.2173	-0.0040151	556.3104409172057	25.974	0.072395	25.974	25.95	26.022	0	1200	52	0.89836043	0.03125292	0.89836043	364.29282	0	12.673309						93	4	2	NaN	NaN	NaN	0.76892	1	13316	13316		3.2116	0.058268	1	11994			20371	7187	11734	12080	16153	16153					0.0636733511184957
PRARVKRIQPC	11	Unmodified	_PRARVKRIQPC_					0	0	0			REV__ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	REV__ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.3931475495501	2	662.393148	1322.77174	2.4633	0.0016317	-7.6872	-0.005092	-5.2239	-0.0034603	662.3891502242714	35.312	0.048321	35.312	35.287	35.336	-4.5776E-05	1089	31	0.96624947	0.018307865	0.96473	391.0511	0	7.409363						29	3	2	NaN	NaN	NaN	0.76488	1	18291	18291		2.8895	0.55133	1	2006.6	+		20372	13655	11735	12081	16154	16154					0.1232671645038863
PRCRDGRRSLV	11	Unmodified	_PRCRDGRRSLV_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|32|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|32|3|sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|32|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8622115619	2	657.862212	1313.70987	1.7014	0.0011193	-6.3931	-0.0042058	-4.6917	-0.0030865	658.3602257744798	38.345	0.096142	38.349	38.301	38.397	0.0040245	1254	31	0.8652351	0.018420875	0.86371565	350.19452	0	7.4556274						103	5	4	NaN	NaN	NaN	0.76654	1	18170	18170		2.5994	0	1	5546.4			20373	13707	11736	12082	16155	16155					0.06556365031224232
PRDLEPFYNEM	11	Unmodified	_PRDLEPFYNEM_					0	0	0			REV__ENSG00000196155|ENST00000379344|PLEKHG4	REV__ENSG00000196155|ENST00000379344|PLEKHG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.8215520321501	2	705.821552	1409.62855	1.3392	0.0009452	-10.747	-0.0075856	-9.408	-0.0066404	705.8147483323346	16.758	0.11993	16.758	16.734	16.854	0	1098	34	0.960755	0.020148396	0.960755	388.57965	0	8.149078						124	6	3	NaN	NaN	NaN	0.47586	1	20141	20141		19.336	0.17285	1	11414	+		20374	11088	11737	12083	16156	16156					-0.05987800242019148
PRFYPERPH	9	Unmodified	_PRFYPERPH_					0	0	0		ENST00000505925.1_1_5:107060760-107061060:+|nuORF	ENST00000505925.1_1_5:107060760-107061060:+|nuORF	ENST00000505925.1_1_5:107060760-107061060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8094393224001	2	599.809439	1197.60433	1.2422	0.00074507	-1.0564	-0.00063361	0.18582	0.00011146	599.8089271497785	24.912	0.072409	24.912	24.888	24.96	0	1005	85	1.0174452	0.051124156	1.0174452	412.21512	0	20.71283						124	4	2	NaN	NaN	NaN	0.68748	1	16397	16397		0.27539	0	1	10666			20375	7332	11738	12084	16157	16157					0.013427721772814039
PRFYPERPH	9	Unmodified						0	0	0		ENST00000505925.1_1_5:107060760-107061060:+|nuORF	ENST00000505925.1_1_5:107060760-107061060:+|nuORF	ENST00000505925.1_1_5:107060760-107061060:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.809439	1197.60433	1.4972	0.00089804	-1.7154	-0.0010289	-0.21822	-0.00013089	599.8089889376589	24.912	0.072393	24.9	24.875	24.948	-0.012392	1011	61	1.0137935	0.036521196	1.012274	410.73566		14.796448	-0.0062901	-0.00045336	-0.0025856	NaN	0.27539	63	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4332.7			20376	7332	11738	12084							0.013427721772814039
PRGCGGPG	8	Unmodified	_PRGCGGPG_					0	0	0		ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.6633978619	2	350.663398	699.312243	1.4438	0.00050628	-4.2785	-0.0015003	-2.8348	-0.00099404	350.6619722356441	35.988	0.096439	35.988	35.964	36.061	0	1509	40	0.70793515	0.024169981	0.70793515	289.13373	0	9.87146						61	5	2	NaN	NaN	NaN	0.84876	1	3210	3210		0.39566	0	1	4805.7			20377	6755	11739	12085	16158	16158					-0.049440841083537634
PRGCGGPG	8	Unmodified						0	0	0		ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	350.663398	699.312243	2.0029	0.00070234	-10.651	-0.0037348	-8.6477	-0.0030324	350.6598446617323	35.987	0.048286	35.988	35.964	36.012	0.0011024	1506	37	0.70979416	0.022309542	0.7082747	289.893		9.111633	-0.00019356	-0.0018315	0.0001698	NaN	0.39566	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4130.8			20378	6755	11739	12085							-0.049440841083537634
PRGSFCCCVL	10	Unmodified	_PRGSFCCCVL_					0	0	0		ENST00000550722.5_1_12:112630894-112631429:-|nuORF	ENST00000550722.5_1_12:112630894-112631429:-|nuORF	ENST00000550722.5_1_12:112630894-112631429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.74046493965	2	542.740465	1083.46638	1.466	0.00079568	-10.464	-0.0056792	-8.9979	-0.0048835	542.7359895859379	24.743	0.096508	24.731	24.682	24.779	-0.012394	1329	37	0.81912065	0.022162437	0.8176012	332.26242	0	8.989838						108	5	3	NaN	NaN	NaN	0.62764	1	11800	11800		13.003	0.41496	1	7319.7			20379	7542	11740	12086	16159	16159					-0.07201758729524954
PRHGGGGG	8	Unmodified	_PRHGGGGG_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3379465134002	1	694.337947	693.33067	1.5212	0.0010563	1.4258	0.00099001	2.9471	0.0020463	694.3390235512436	34.686	0.36189	34.686	34.493	34.855	0	630	97	1.2441287	0.057686448	1.2441287	254.11157	0	11.782364						497	16	3	NaN	NaN	NaN	0.84692	1	3111	3111		1.4396	0	1	70017	+		20380	11246	11741	12087	16160	16160					-0.028262061421401086
PRHGGGGG	8	Unmodified						0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	694.337947	693.33067	1.5212	0.0010563	1.4258	0.00099001	2.9471	0.0020463	694.3390235512436	34.686	0.36189	34.686	34.493	34.855	0	630	97	1.2441287	0.057686448	1.2441287	254.11157		11.782364	0.013092	-0.00036846	-0.00014091	NaN	1.4396	497	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70017	+		20381	11246	11741	12087							-0.028262061421401086
PRHGGGGG	8	Unmodified						0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.337947	693.33067	1.0472	0.00072713	2.4462	0.0016985	3.4934	0.0024256	694.339758140788	34.66	0.28928	34.66	34.539	34.828	-0.00064468	627	91	1.24593	0.0540694	1.2444105	254.47948		11.043625	-0.013092	0.00034001	0.00014091	NaN	1.4396	454	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62788	+		20382	11246	11741	12087							-0.028262061421401086
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7934549072002	2	528.793455	1055.57236	1.4467	0.00076503	-2.7351	-0.0014463	-1.2883	-0.00068125	528.7918947395103	15.244	0.07204	15.232	15.208	15.28	-0.012201	1302	40	0.8357362	0.02398467	0.8342168	339.11465	0	9.732208						66	4	3	NaN	NaN	NaN	0.65755	1	10684	10684		10.244	1.3246	1	5144.3			20383	2468	11742	12088	16161	16161					0.04679359703482078
PRPIYHPLL	9	Unmodified	_PRPIYHPLL_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.2220763373667	3	369.222076	1104.6444	1.3037	0.00048136	-2.9435	-0.0010868	-1.6398	-0.00060545	369.55456108310915	20.742	0.096458	20.742	20.694	20.79	0	1440	46	0.7506418	0.027812898	0.7506418	456.61255	0	16.918488						100	5	3	NaN	NaN	NaN	0.20577	1	13058	13058		16.858	3.3953	1	8524.3	+		20384	11288	11743	12089	16162	16162					0.09626318847836046
PRPMKTLQRS	10	Unmodified	_PRPMKTLQRS_					0	0	0		ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3453316897001	2	607.345332	1212.67611	0.62685	0.00038071	3.2798	0.001992	3.9067	0.0023727	607.348469474218	29.811	0.21712	29.803	29.755	29.972	-0.0070648	1134	70	0.9387595	0.04218304	0.93724006	380.28195	0	17.087921						257	10	3	NaN	NaN	NaN	0.70677	1	16135	16135		7.5876	0	1	29812			20385	4288	11744	12090	16163	16163					0.07827943539473381
PRRARKRSPK	10	Unmodified	_PRRARKRSPK_					0	0	0			REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7868812023999	1	1251.78688	1250.7796	1.897	0.0023746	-0.20846	-0.00026095	1.6885	0.0021136	1251.7860218127398	40.993	0.14418	40.993	40.873	41.017	0	774	154	1.1574414	0.09240663	1.1574414	234.35558	0	18.71025						394	7	2	NaN	NaN	NaN	0.77513	1	17802	17802		1.7022	0.77633	1	23939	+		20386	11568	11745	12091	16164	16164					0.1642461176213601
PRRARKRSPK	10	Unmodified	_PRRARKRSPK_					0	0	0			REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7868812023999	1	1251.78688	1250.7796	1.5982	0.0020006	1.4308	0.001791	3.029	0.0037917	1251.788689792249	41.111	0.12051	41.118	41.118	41.239	0.0074959	783	64	1.1520087	0.03804159	1.1504892	233.25557	0	7.702545						88	6	2	NaN	NaN	NaN	0.77513	1	17046	17046		1.7022	0.37103	1	4782.9	+		20387	11568	11745	12091	16165	16165					0.1642461176213601
PRRARKRSPK	10	Unmodified						0	0	0			REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1251.78688	1250.7796	1.897	0.0023746	-0.20846	-0.00026095	1.6885	0.0021136	1251.7860218127398	40.993	0.14418	40.993	40.873	41.017	0	774	154	1.1574414	0.09240663	1.1574414	234.35558		18.71025	-0.062884	-0.00056411	0.0034761	NaN	1.7022	394	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23939	+		20388	11568	11745	12091							0.1642461176213601
PRRARKRSPK	10	Unmodified						0	0	0			REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	REV__ENST00000265109.7_1_5:34656463-34686997:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1251.78688	1250.7796	1.5982	0.0020006	1.4308	0.001791	3.029	0.0037917	1251.788689792249	41.111	0.12051	41.118	41.118	41.239	0.0074959	783	64	1.1520087	0.03804159	1.1504892	233.25557		7.702545	0.062884	0.0014879	-0.0034761	NaN	1.7022	88	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4782.9	+		20389	11568	11745	12091							0.1642461176213601
PRRRSPHTSM	10	Unmodified	_PRRRSPHTSM_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.82255508515	2	612.822555	1223.63056	0.53287	0.00032656	-0.92049	-0.00056409	-0.38761	-0.00023754	612.82315231742	20.815	0.072178	20.801	20.801	20.873	-0.014088	1161	52	0.9222442	0.031215787	0.92072475	373.55417	0	12.643921						102	4	3	NaN	NaN	NaN	0.71559	1	16380	16380		6.9844	0	1	11403	+		20390	8866	11746	12092	16166	16166					0.027687180770954
PRRYFPFP	8	Unmodified	_PRRYFPFP_					0	0	0			REV__ENST00000492946.1_1_6:31939095-31939807:-|nuORF	REV__ENST00000492946.1_1_6:31939095-31939807:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2928938012001	2	540.292894	1078.57123	0.11453	6.1879E-05	-9.0545	-0.0048921	-8.9399	-0.0048302	540.7896116339808	54.522	0.0723	54.521	54.497	54.569	-0.0006218	1248	25	0.8689189	0.014733493	0.86739945	352.4823	0	5.976715						67	4	3	NaN	NaN	NaN	0.84692	1	11615	11615		1.4396	0	1	3776	+		20391	11235	11747	12093	16167	16167					0.03509190125214445
PRVQELFE	8	Unmodified	_PRVQELFE_					0	0	0		tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.27182400810005	2	509.271824	1016.5291	1.5397	0.00078411	-1.1349	-0.00057798	0.40477	0.00020614	509.2712197707251	27.326	0.096579	27.326	27.302	27.398	0	1182	58	0.9093879	0.034907043	0.9093879	369.18256	0	14.171173						110	5	2	NaN	NaN	NaN	0.84887	1	9236	9236		0.32989	0	1	12641			20392	13941	11748	12094	16168	16168					0.021491699262014663
PRVQELFE	8	Unmodified						0	0	0		tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	tr|U7T0U1|U7T0U1_FUSNUDNA-directedRNApolymerasesubunitbeta'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoCPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.271824	1016.5291	0.95882	0.0004883	0.60963	0.00031047	1.5685	0.00079877	509.27250202575044	27.349	0.096569	27.339	27.315	27.411	-0.010126	1185	55	0.90755045	0.033071637	0.906031	368.4366		13.426056	0.0066356	0.0011676	-0.0016784	NaN	0.32989	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11521			20393	13941	11748	12094							0.021491699262014663
PRVSGGGE	8	Unmodified	_PRVSGGGE_					0	0	0		ENST00000481869.1_1_1:934427-935027:-|nuORF	ENST00000481869.1_1_1:934427-935027:-|nuORF	ENST00000481869.1_1_1:934427-935027:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.6932095463501	2	379.69321	757.371866	1.6225	0.00061604	-5.9536	-0.0022605	-4.3312	-0.0016445	379.6926208868759	54.884	0.048027	54.884	54.884	54.932	0	1455	37	0.7413668	0.02226597	0.7413668	302.34293	0	9.080475						81	3	4	NaN	NaN	NaN	0.8439	1	4185	4185		3.1533	1.7138	1	5775.9			20394	7207	11749	12095	16169	16169					-0.01652489893319853
PRWSARCGGQL	11	Unmodified	_PRWSARCGGQL_					0	0	0			REV__ENST00000448507.5_1_4:7033675-7033846:+|nuORF	REV__ENST00000448507.5_1_4:7033675-7033846:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.8768628541	3	410.876863	1229.60876	1.6028	0.00065856	4.2041	0.0017274	5.8069	0.0023859	410.8785408874426	16.658	0.19182	16.645	16.525	16.717	-0.013294	1464	34	0.73579943	0.020418286	0.73428	447.02396	0	12.404816						126	9	2	NaN	NaN	NaN	0.6875	1	16541	16541		3.9007	0	1	11674	+		20395	12221	11750	12096	16170	16170					0.003139133285230855
PRWWRRLHWQR	11	Unmodified	_PRWWRRLHWQR_					0	0	0		ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	ENST00000431361.1_1_20:61432246-61432384:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	838.9609088993001	2	838.960909	1675.90726	1.2403	0.0010406	-9.5276	-0.0079933	-8.2873	-0.0069527	838.9529580996741	22.934	0.096502	22.921	22.872	22.969	-0.01354	912	55	1.0739466	0.0327456	1.0724272	433.68912	0	13.223572						175	5	4	NaN	NaN	NaN	0.77278	1	19794	19794		1.5054	1.3923	1	21685			20396	6970	11751	12097	16171	16171					0.09634752356191711
PSAFLSYA	8	Unmodified	_PSAFLSYA_					0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA;ENST00000563767.1_1_16:89857732-89858395:-|nuORF	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4246958351999	1	855.424696	854.417419	1.1457	0.00098007	-4.9212	-0.0042097	-3.7755	-0.0032296	855.4211002497027	22.235	0.072369	22.222	22.173	22.246	-0.013731	1299	55	0.8375814	0.033218563	0.83606195	170.44907	0	6.760025						85	4	2	NaN	NaN	NaN	0.84727	1	5316	5316		1.2418	0	1	8249.1			20397	5517	11752	12098	16172	16172					-0.015612644309612733
PSAFLSYA	8	Unmodified						0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA;ENST00000563767.1_1_16:89857732-89858395:-|nuORF	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	855.424696	854.417419	1.9019	0.0016269	-5.739	-0.0049093	-3.8371	-0.0032823	855.4204150239015	22.236	0.072327	22.236	22.187	22.26	0	1302	49	0.8357362	0.029530823	0.8357362	170.07356		6.009552	0.0070723	-0.00033049	-0.00016287	NaN	1.2418	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10303			20398	5517	11752	12098							-0.015612644309612733
PSAGGGGPG	9	Unmodified	_PSAGGGGPG_					0	0	0			REV__ENSG00000185668|ENST00000373012|POU3F1	REV__ENSG00000185668|ENST00000373012|POU3F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2998296726	1	656.29983	655.292553	0.9959	0.00065361	-8.8734	-0.0058236	-7.8775	-0.00517	656.2942039513003	26.891	0.096512	26.891	26.867	26.964	0	690	67	1.2080631	0.039740086	1.2080631	247.02243	0	8.125977						85	5	2	NaN	NaN	NaN	0.6762	1	2172	2172		1.2418	0.84618	1	6547.7	+		20399	10969	11753	12099	16173	16173					-0.048881368474781084
PSAGGGGPG	9	Unmodified						0	0	0			REV__ENSG00000185668|ENST00000373012|POU3F1	REV__ENSG00000185668|ENST00000373012|POU3F1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	656.29983	655.292553	0.9959	0.00065361	-8.8734	-0.0058236	-7.8775	-0.00517	656.2942039513003	26.891	0.096512	26.891	26.867	26.964	0	690	67	1.2080631	0.039740086	1.2080631	247.02243		8.125977	-0.0063212	0.00066963	-0.00014284	NaN	1.2418	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6547.7	+		20400	10969	11753	12099							-0.048881368474781084
PSAGGGGPG	9	Unmodified						0	0	0			REV__ENSG00000185668|ENST00000373012|POU3F1	REV__ENSG00000185668|ENST00000373012|POU3F1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	656.29983	655.292553	1.5402	0.0010109	-11.364	-0.0074585	-9.8242	-0.0064476	656.2928316720786	26.915	0.048248	26.904	26.856	26.904	-0.010645	687	43	1.2098682	0.025272846	1.2083488	247.39156		5.167755	0.0063212	-0.00096525	0.00014284	NaN	1.2418	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3370.2	+		20401	10969	11753	12099							-0.048881368474781084
PSAGLDVP	8	Unmodified	_PSAGLDVP_					0	0	0		ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3933957068	1	755.393396	754.386119	1.4257	0.001077	5.0727	0.0038319	6.4984	0.0049088	755.3973301730653	36.688	0.12049	36.688	36.591	36.712	0	564	58	1.2837118	0.03415072	1.2837118	261.78513	0	6.9642944						147	6	2	NaN	NaN	NaN	0.76633	1	4144	4144		13.737	0	1	17266			20402	6461	11754	12100	16174	16174					-0.0008983746505464296
PSAGLDVP	8	Unmodified	_PSAGLDVP_					0	0	0		ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068	1	755.393396	754.386119	1.536	0.0011603	4.9147	0.0037125	6.4506	0.0048728	755.3969079996224	35.914	0.024055	35.916	35.916	35.94	0.0011024	561	49	1.2855089	0.028747797	1.2839894	262.15158	0	5.862488						58	2	2	NaN	NaN	NaN	0.80692	1	4067	4067		8.2903	0	1	6530			20403	6461	11754	12100	16175	16175					-0.0008983746505464296
PSALALSLL	9	Unmodified	_PSALALSLL_					0	0	0		ENST00000563753.1_1_15:73884305-73925556:-|nuORF;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	ENST00000563753.1_1_15:73884305-73925556:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.5451453219001	1	884.545145	883.537869	1.1226	0.000993	0.070682	6.2521E-05	1.1933	0.0010555	884.5454418341859	31.018	0.072399	31.018	30.994	31.066	0	360	97	1.405474	0.05704403	1.405474	285.8667	0	11.602478						143	4	2	NaN	NaN	NaN	0.043119	1	5850	5850		49.833	5.5305	1	16320			20404	3925	11755	12101	16176	16176					0.09144143562662066
PSARNKQG	8	Unmodified	_PSARNKQG_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4587899306001	1	857.45879	856.451513	0.94162	0.0008074	-2.0053	-0.0017195	-1.0637	-0.00091205	857.4575125541094	33.937	0.12065	33.936	33.887	34.008	-0.0012474	519	46	1.310647	0.026909351	1.3091276	266.7086	0	5.475891						111	6	2	NaN	NaN	NaN	0.84455	1	5351	5351		2.7852	0	1	7326.2	+		20405	9499	11756	12102	16177	16177					0.017545767806609547
PSAWPRGP	8	Unmodified	_PSAWPRGP_					0	0	0		ENST00000480308.5_1_1:161646774-161647023:+|nuORF	ENST00000480308.5_1_1:161646774-161647023:+|nuORF	ENST00000480308.5_1_1:161646774-161647023:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.4471626118001	1	867.447163	866.439886	0.87985	0.00076322	-8.2982	-0.0071982	-7.4183	-0.006435	867.4399484074452	30.534	0.21716	30.529	30.432	30.649	-0.0057545	387	100	1.389409	0.058948755	1.3878895	282.68466	0	11.993561						367	10	2	NaN	NaN	NaN	0.75561	1	5478	5478		15.175	1.1338	1	35633			20406	7199	11757	12103	16178	16178					0.0013237975732636187
PSDMAAALL	9	Unmodified	_PSDMAAALL_					0	0	0			REV__ENST00000597227.5_1_19:50432514-50434160:+|nuORF	REV__ENST00000597227.5_1_19:50432514-50434160:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4495303772	1	888.44953	887.442254	1.6025	0.0014237	-0.09756	-8.6677E-05	1.5049	0.001337	888.4498992052543	26.456	0.21717	26.445	26.421	26.638	-0.011137	378	88	1.3947657	0.0517869	1.3932463	283.66953	0	10.532501						410	10	4	NaN	NaN	NaN	0.03623	1	5783	5783		52.758	2.9254	1	77444	+		20407	12947	11758	12104	16179	16179					-0.005969526198896347
PSDMAVALL	9	Unmodified	_PSDMAVALL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4808305056	1	916.480831	915.473554	1.693	0.0015516	-0.39267	-0.00035987	1.3003	0.0011917	916.4809757455862	27.253	0.19306	27.253	27.205	27.398	0	336	145	1.419741	0.0856663	1.419741	288.61404	0	17.414795						522	9	5	NaN	NaN	NaN	0.056143	1	6332	6332		44.302	2.5178	1	120980			20408	7990	11759	12105	16180	16180					0.0124362041420909
PSDPLSNATLR	11	Unmodified	_PSDPLSNATLR_					0	0	0			REV__SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|16|2|sense	REV__SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|16|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.80930193665	2	585.809302	1169.60405	1.2056	0.00070625	-10.055	-0.0058906	-8.8498	-0.0051843	585.8027998604232	26.673	0.072388	26.663	26.639	26.711	-0.010643	1191	103	0.90387505	0.062515974	0.9023556	366.30234	0	25.335083						270	4	3	NaN	NaN	NaN	0.57257	1	14934	14934		15.822	0.96793	1	64917	+		20409	13351	11760	12106	16181	16181					0.0260330766673178
PSDPPNVMPD	10	Unmodified	_PSDPPNVMPD_					0	0	0			REV__nc|ENSG00000175224|O75143-4|ATG13	REV__nc|ENSG00000175224|O75143-4|ATG13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7369567355	2	534.736957	1067.45936	2.4339	0.0013015	3.6733	0.0019643	6.1072	0.0032658	534.7394912006207	18.197	0.14386	18.197	18.149	18.292	0	1296	67	0.8394264	0.040574074	0.8394264	340.56314	0	16.461304						146	7	2	NaN	NaN	NaN	0.70677	1	11432	11432		7.5876	1.3374	1	11300	+		20410	10722	11761	12107	16182	16182					-0.07167076804739736
PSDPPNVMPD	10	Unmodified						0	0	0			REV__nc|ENSG00000175224|O75143-4|ATG13	REV__nc|ENSG00000175224|O75143-4|ATG13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.736957	1067.45936	2.4339	0.0013015	3.6733	0.0019643	6.1072	0.0032658	534.7394912006207	18.197	0.14386	18.197	18.149	18.292	0	1296	67	0.8394264	0.040574074	0.8394264	340.56314		16.461304	0	0	0	NaN	7.5876	146	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11300	+		20411	10722	11761	12107							-0.07167076804739736
PSDSAVVTI	9	Unmodified	_PSDSAVVTI_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4672889314	1	888.467289	887.460012	1.908	0.0016952	-2.277	-0.002023	-0.36897	-0.00032781	888.4644787345609	25.057	0.072371	25.057	25.033	25.105	0	390	43	1.3876231	0.025007248	1.3876231	282.21677	0	5.0859985						72	4	2	NaN	NaN	NaN	0.27442	1	5904	5904		20.555	5.3801	1	5714.1	+		20412	10328	11762	12108	16183	16183					0.011780859066220728
PSDTSVVLL	9	Unmodified	_PSDTSVVLL_					0	0	0		ENST00000310842.8_1_7:76239320-76240795:-|nuORF;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.514239124	1	930.514239	929.506963	1.9913	0.0018529	-0.028156	-2.62E-05	1.9631	0.0018267	930.513997498112	25.057	0.16889	25.057	25.009	25.178	0	321	67	1.4286518	0.039192796	1.4286518	290.36053	0	7.965576						260	8	3	NaN	NaN	NaN	0.056143	1	6598	6598		44.302	14.704	1	40934			20413	5548	11763	12109	16184	16184					0.039389454577644756
PSDTSVVLL	9	Unmodified	_PSDTSVVLL_					0	0	0		ENST00000310842.8_1_7:76239320-76240795:-|nuORF;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.514239124	1	930.514239	929.506963	1.3862	0.0012899	-0.12307	-0.00011452	1.2632	0.0011754	930.5137725626764	25.057	0.14472	25.045	24.996	25.141	-0.012011	321	61	1.4286518	0.03562975	1.4271324	290.36053	0	7.2414246						241	7	3	NaN	NaN	NaN	0.056143	1	6463	6463		44.302	5.3845	1	37896			20414	5548	11763	12109	16185	16185					0.039389454577644756
PSECPLLAIL	10	Unmodified	_PSECPLLAIL_					0	0	0			REV__nc|ENSG00000198520|Q6PIY5-2|ARMH1	REV__nc|ENSG00000198520|Q6PIY5-2|ARMH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5805445501999	1	1055.58054	1054.57327	1.9727	0.0020824	-5.1568	-0.0054434	-3.1841	-0.0033611	1055.5757532651191	36.229	0.096481	36.229	36.181	36.278	0	90	100	1.5652816	0.058338642	1.5652816	317.57806	0	11.836243						289	5	3	NaN	NaN	NaN	0.2358	1	10851	10851		32.453	0	1	75406	+		20415	11176	11764	12110	16186	16186					0.04816438028160519
PSFYAERFFKF	11	Unmodified	_PSFYAERFFKF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.24331716029997	3	480.243317	1437.70812	1.477	0.00070932	-1.9323	-0.00092797	-0.45529	-0.00021865	480.5767253778801	26.746	0.14528	26.746	26.698	26.843	0	1356	46	0.8024889	0.027731597	0.8024889	486.75714	0	16.820862						107	7	3	NaN	NaN	NaN	0.6751	1	20317	20317		9.0915	3.554	1	8190			20416	5454	11765	12111	16187	16187					0.00677634494263657
PSGGCGPP	8	Unmodified	_PSGGCGPP_					0	0	0			REV__ENST00000442263.4_1_13:52027109-52027145:-|nuORF	REV__ENST00000442263.4_1_13:52027109-52027145:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2817367674	1	671.281737	670.27446	1.2554	0.00084272	7.5466	0.0050659	8.802	0.0059086	671.2855547278999	32.369	0.024132	32.365	32.365	32.389	-0.0037613	1113	52	0.9515937	0.031148553	0.95007426	194.49109	0	6.366287						46	2	2	NaN	NaN	NaN	0.84692	1	2513	2513		1.4396	0	1	4207.5	+		20417	12195	11766	12112	16188	16188					-0.07386595093839787
PSGGCGPP	8	Unmodified	_PSGGCGPP_					0	0	0			REV__ENST00000442263.4_1_13:52027109-52027145:-|nuORF	REV__ENST00000442263.4_1_13:52027109-52027145:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2817367674	1	671.281737	670.27446	0.88196	0.00059204	8.5993	0.0057725	9.4812	0.0063646	671.2880557602149	32.151	0.048248	32.148	32.148	32.196	-0.0037613	1083	70	0.9699114	0.042123973	0.96839195	198.23494	0	8.609482						94	3	2	NaN	NaN	NaN	0.84727	1	2515	2515		1.2418	0	1	6760.3	+		20418	12195	11766	12112	16189	16189					-0.07386595093839787
PSGGERTLQW	10	Unmodified	_PSGGERTLQW_					0	0	0		ENST00000376499.7_2_9:84303978-84304179:-|nuORF	ENST00000376499.7_2_9:84303978-84304179:-|nuORF	ENST00000376499.7_2_9:84303978-84304179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.78308718615	2	565.783087	1129.55162	1.636	0.00092565	0.36012	0.00020375	1.9962	0.0011294	566.2869336598137	20.766	0.21691	20.766	20.646	20.862	0	1218	64	0.8873258	0.03863156	0.8873258	359.74417	0	15.662201						343	10	5	NaN	NaN	NaN	0.70677	1	14063	14063		7.5876	1.3374	1	43237			20419	6700	11767	12113	16190	16190					-0.007972306761985237
PSGHERERKEQ	11	Unmodified	_PSGHERERKEQ_					0	0	0		ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.83691367065	2	676.836914	1351.65927	1.4932	0.0010107	-11.394	-0.0077121	-9.9011	-0.0067015	676.8283625871944	23.634	0.14461	23.621	23.572	23.717	-0.013048	1095	61	0.9625867	0.036639452	0.96106726	389.48267	0	14.825043						170	7	4	NaN	NaN	NaN	0.63477	1	18687	18687		11.739	2.1272	1	16848			20420	6522	11768	12114	16191	16191					-0.0024888581278901256
PSGNSFVE	8	Unmodified	_PSGNSFVE_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.3784739241	1	836.378474	835.371197	0.93549	0.00078242	7.2217	0.0060401	8.1572	0.0068225	836.3849414774971	29.666	0.19303	29.659	29.61	29.803	-0.0070648	495	76	1.3249949	0.044810772	1.3234755	269.73572	0	9.122345						346	9	4	NaN	NaN	NaN	0.78264	1	5072	5072		11.548	1.8025	1	49542			20421	1740	11769	12115	16192	16192					-0.05307329333038524
PSGPLFGA	8	Unmodified	_PSGPLFGA_					0	0	0		ENST00000581347.2_1_18:5895340-5895915:-|nuORF	ENST00000581347.2_1_18:5895340-5895915:-|nuORF	ENST00000581347.2_1_18:5895340-5895915:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3879163984001	1	745.387916	744.38064	1.4408	0.0010739	-0.96059	-0.00071601	0.4802	0.00035793	745.3869588253692	29.183	0.12068	29.175	29.151	29.272	-0.0077209	564	46	1.2837118	0.026955366	1.2821923	261.84796	0	5.498291						113	6	2	NaN	NaN	NaN	0.80071	1	3892	3892		9.1232	0	1	9086.9			20422	7682	11770	12116	16193	16193					-0.0017751625686059924
PSGSALMF	8	Unmodified	_PSGSALMF_					0	0	0			REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3862018389001	1	809.386202	808.378925	1.4683	0.0011884	0.74184	0.00060043	2.2101	0.0017889	809.3863501710485	30.849	0.19304	30.849	30.825	31.018	0	474	73	1.3375392	0.0429976	1.3375392	272.43655	0	8.757965						355	9	3	NaN	NaN	NaN	0.75682	1	4867	4867		15.013	0	1	50588	+		20423	11782	11771	12117	16194	16194					-0.0329289333711813
PSGSALMF	8	Unmodified	_PSGSALMF_					0	0	0			REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3862018389001	1	809.386202	808.378925	1.4002	0.0011333	0.29763	0.0002409	1.6978	0.0013742	809.3865938748553	30.848	0.2655	30.842	30.794	31.06	-0.0057545	471	70	1.3393306	0.041203856	1.3378111	272.80142	0	8.392609						356	12	3	NaN	NaN	NaN	0.75682	1	4775	4775		15.013	0	1	49013	+		20424	11782	11771	12117	16195	16195					-0.0329289333711813
PSGSALMF	8	Unmodified						0	0	0			REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	809.386202	808.378925	1.4683	0.0011884	0.74184	0.00060043	2.2101	0.0017889	809.3863501710485	30.849	0.19304	30.849	30.825	31.018	0	474	73	1.3375392	0.0429976	1.3375392	272.43655		8.757965	0.0034348	0.00020224	-0.00013592	NaN	15.013	355	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50588	+		20425	11782	11771	12117							-0.0329289333711813
PSGSALMF	8	Unmodified						0	0	0			REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	REV__ENST00000340124.8_1_16:46963944-46964193:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	809.386202	808.378925	1.4002	0.0011333	0.29763	0.0002409	1.6978	0.0013742	809.3865938748553	30.848	0.2655	30.842	30.794	31.06	-0.0057545	471	70	1.3393306	0.041203856	1.3378111	272.80142		8.392609	-0.0034348	-0.00015729	0.00013592	NaN	15.013	356	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49013	+		20426	11782	11771	12117							-0.0329289333711813
PSGYLIPLTQ	10	Unmodified	_PSGYLIPLTQ_					0	0	0		E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant;ENSG00000129173|ENST00000250024|E2F8	E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant	E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.8029569610001	2	544.802957	1087.59136	1.5014	0.00081794	-5.1218	-0.0027904	-3.6205	-0.0019725	544.8000920055853	30.028	0.048262	30.021	29.997	30.045	-0.0064106	1284	37	0.8468043	0.02212894	0.8452849	343.47543	0	8.9758						49	3	2	NaN	NaN	NaN	0.70677	1	11983	11983		7.5876	1.8934	1	4686.2			20427	279	11772	12118	16196	16196					0.05106896274514838
PSGYLIPLTQ	10	Unmodified						0	0	0		E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant;ENSG00000129173|ENST00000250024|E2F8	E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant	E2F8|p.E658Vfs*20|1|0.56|ENSG00000129173|chr11:19225776-19225785|CTTGAGTTTT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.802957	1087.59136	1.775	0.00096705	-2.847	-0.0015511	-1.072	-0.00058403	544.8011871463378	30.029	0.072445	30.029	30.004	30.077	0	1287	31	0.8449601	0.01844281	0.8449601	342.7274		7.480652	0.00367	0.0013728	-0.00016237	NaN	7.5876	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4911.5			20428	279	11772	12118							0.05106896274514838
PSIFKMSEE	9	Unmodified	_PSIFKMSEE_					0	0	0		SLCO6A1|p.G639E|1|0.2|ENSG00000205359|chr5:102388789-102388789|C/T|missense_variant	SLCO6A1|p.G639E|1|0.2|ENSG00000205359|chr5:102388789-102388789|C/T|missense_variant	SLCO6A1|p.G639E|1|0.2|ENSG00000205359|chr5:102388789-102388789|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2575250021001	2	534.257525	1066.5005	1.3172	0.00070374	-6.877	-0.0036741	-5.5597	-0.0029703	534.2535726084567	17.258	0.23981	17.244	17.172	17.412	-0.013567	1293	67	0.84127116	0.040587306	0.8397517	341.31552	0	16.466827						231	11	2	NaN	NaN	NaN	0.31737	1	11130	11130		17.799	2.3363	1	36840			20429	13679	11773	12119	16197	16197					-0.0300931576525727
PSIKQFMDI	9	Unmodified	_PSIKQFMDI_					0	0	0		nc|ENSG00000168268|Q9H857-4|NT5DC2;NT5DC2|p.R352Afs*47|1|0.31|ENSG00000168268|chr3:52525250-52525250|G/-|frameshift_variant;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5601434591	1	1078.56014	1077.55287	1.1203	0.0012083	2.0696	0.0022322	3.1899	0.0034405	1078.5630768315077	32.804	0.072388	32.804	32.732	32.804	0	138	49	1.5369828	0.028319836	1.5369828	311.7506	0	5.7442017						67	4	2	NaN	NaN	NaN	0.54912	1	11866	11866		7.5876	0.7936	1	5522.7			20430	4609	11774	12120	16198	16198					0.017192673683439352
PSIREQWWRW	10	Unmodified	_PSIREQWWRW_					0	0	0		ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.36765269305	2	722.367653	1442.72075	0.54783	0.00039573	1.495	0.0010799	2.0428	0.0014756	722.3692036849554	44.518	0.12013	44.529	44.481	44.602	0.011646	1113	37	0.9515937	0.021995485	0.95007426	384.7885	0	8.8941345						68	6	2	NaN	NaN	NaN	0.77513	1	19370	19370		1.7022	0	1	4943			20431	7351	11775	12121	16199	16199					0.01710090677147491
PSIREQWWRW	10	Unmodified						0	0	0		ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	722.367653	1442.72075	1.1332	0.00081858	0.81721	0.00059033	1.9504	0.0014089	722.3693982527479	44.544	0.07214	44.544	44.52	44.592	0	1119	28	0.9479278	0.016497552	0.9479278	383.30615		6.6709595	0.0071058	-0.00045014	-0.0010732	NaN	1.7022	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5471.7			20432	7351	11775	12121							0.01710090677147491
PSKELDFSYL	10	Unmodified	_PSKELDFSYL_					0	0	0		ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.80315392625	2	599.803154	1197.59175	1.206	0.00072334	5.8721	0.0035221	7.078	0.0042454	599.8077890534012	34.372	0.19284	34.372	34.324	34.517	0	1188	67	0.90571284	0.04042095	0.90571284	366.94708	0	16.376434						198	9	2	NaN	NaN	NaN	0.6772	1	16395	16395		9.6116	0.64966	1	24026			20433	4951	11776	12122	16200	16200					0.0008627120371329511
PSKPARRL	8	Unmodified	_PSKPARRL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5737601089	1	924.57376	923.566484	-0.23209	-0.00021458	-3.953	-0.0036549	-4.1851	-0.0038694	924.5706603095335	53.922	0.047993	53.921	53.897	53.945	-0.00059509	330	46	1.4233059	0.026732326	1.4217864	289.3012	0	5.4335938						49	3	2	NaN	NaN	NaN	0.83211	1	6360	6360		4.9097	0	1	4411			20434	517	11777	12123	16201	16201					0.1016430598245961
PSLAAKTK	8	Unmodified	_PSLAAKTK_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|68|2|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|68|2|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|68|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4985294803	1	815.498529	814.491253	0.73863	0.00060235	-6.6957	-0.0054603	-5.9571	-0.004858	815.4927449684054	54.57	0.33655	54.569	54.497	54.833	-0.00061798	396	916	1.3840506	0.54661024	1.3825312	281.8749	0	111.322296						3087	15	5	NaN	NaN	NaN	0.84756	1	4845	4845		1.072	0.67635	1	1334500			20435	7860	11778	12124	16202	16202					0.07658703731374317
PSLMSFPI	8	Unmodified	_PSLMSFPI_					0	0	0			REV__ENST00000503000.1_1_4:2332191-2332611:-|nuORF	REV__ENST00000503000.1_1_4:2332191-2332611:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.23586431325003	2	446.235864	890.457176	1.7559	0.00078356	7.6655	0.0034206	9.4214	0.0042042	446.23877349558984	17.81	0.14385	17.796	17.748	17.892	-0.013784	1488	37	0.7209441	0.022292614	0.71942466	293.23315	0	9.0672						99	7	2	NaN	NaN	NaN	0.83211	1	5817	5817		4.9097	0.85605	1	7771.5	+		20436	12523	11779	12125	16203	16203					0.007565392481183153
PSLQVLVLL	9	Unmodified	_PSLQVLVLL_					0	0	0			REV__nc|ENSG00000198732|Q9H4F8|SMOC1	REV__nc|ENSG00000198732|Q9H4F8|SMOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.6342946802	1	981.634295	980.627018	1.3685	0.0013434	-2.0838	-0.0020455	-0.71523	-0.00070209	981.6317793134626	32.925	0.048313	32.925	32.9	32.949	0	198	85	1.5015416	0.049685955	1.5015416	304.9424	0	10.090546						97	3	2	NaN	NaN	NaN	0.35794	1	7912	7912		15.463	3.414	1	8454	+		20437	11187	11780	12126	16204	16204					0.1359297852217196
PSNATLNNLL	10	Unmodified	_PSNATLNNLL_					0	0	0			REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.78783821305	2	528.787838	1055.56112	1.437	0.00075987	-0.98129	-0.00051889	0.45572	0.00024098	528.7874566413781	24.767	0.096523	24.767	24.719	24.816	0	1299	61	0.8375814	0.03688556	0.8375814	339.8634	0	14.966949						105	5	3	NaN	NaN	NaN	0.507	1	10906	10906		19.164	0.045272	1	10157	+		20438	9139	11781	12127	16205	16205					0.035565376093245504
PSNNLSARLEG	11	Unmodified	_PSNNLSARLEG_					0	0	0			REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	REV__tr|U7T3E0|U7T3E0_FUSNUUbiDfamilydecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00236PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.5351597495999	3	386.53516	1156.58365	1.5998	0.00061837	5.6274	0.0021752	7.2271	0.0027935	386.871794854074	19.612	0.071997	19.612	19.564	19.636	0	1473	34	0.7302302	0.020424902	0.7302302	443.95074	0	12.4175415						58	4	2	NaN	NaN	NaN	0.73717	1	15040	15040		2.1547	0	1	5478.7	+		20439	13591	11782	12128	16206	16206					0.011621370069178738
PSNTYKDFKNY	11	Unmodified	_PSNTYKDFKNY_					0	0	0		tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	tr|U7SU95|U7SU95_FUSNUDUF4846domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01150PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.5542199255667	3	459.55422	1375.64083	1.6618	0.00076367	-5.1094	-0.002348	-3.4476	-0.0015844	459.5518442979235	13.733	0.12015	13.733	13.661	13.781	0	1437	31	0.7524962	0.018542886	0.7524962	456.62955	0	11.252228						131	6	4	NaN	NaN	NaN	0.68478	1	19858	19858		8.4563	1.3259	1	11489			20440	13881	11783	12129	16207	16207					-0.0319644050732677
PSPLGLLLS	9	Unmodified	_PSPLGLLLS_					0	0	0		nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA	nc|ENSG00000110721|P35790-2|CHKA	nc|ENSG00000110721|P35790-2|CHKA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5451453219001	1	896.545145	895.537869	0.73589	0.00065976	-0.029119	-2.6107E-05	0.70677	0.00063365	896.5445052040553	44.877	0.095787	44.889	44.865	44.961	0.011646	354	37	1.4090419	0.021402955	1.4075224	286.5335	0	4.352356						61	5	2	NaN	NaN	NaN	0.49672	1	5887	5887		9.746	0	1	3767.3			20441	1774	11784	12130	16208	16208					0.08592143562668753
PSPLGVGG	8	Unmodified	_PSPLGVGG_					0	0	0			REV__ENST00000337120.9_2_16:28877140-28877416:+|nuORF	REV__ENST00000337120.9_2_16:28877140-28877416:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3722663342002	1	683.372266	682.36499	1.206	0.00082415	5.0959	0.0034824	6.3019	0.0043066	683.3758127979593	31.186	0.19307	31.181	31.133	31.326	-0.0050716	615	88	1.2531329	0.05223632	1.2516136	256.0303	0	10.672531						292	9	3	NaN	NaN	NaN	0.84651	1	2803	2803		1.6704	0	1	47476	+		20442	11767	11785	12131	16209	16209					0.011101972261030824
PSPPKKKR	8	Unmodified	_PSPPKKKR_					0	0	0		SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.30071883330004	2	469.300719	936.586885	1.2773	0.00059943	-10.412	-0.0048863	-9.1346	-0.0042869	469.29594908279694	55.845	0.023991	55.845	55.845	55.869	0	1194	34	0.902037	0.020218074	0.902037	366.61557	0	8.217285						59	2	3	NaN	NaN	NaN	0.84756	1	6761	6761		1.072	0.74213	1	8281.1			20443	13705	11786	12132	16210	16210					0.11605476642273516
PSPPKKKR	8	Unmodified						0	0	0		SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|72|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	469.300719	936.586885	-0.95646	-0.00044887	-10.787	-0.0050624	-11.743	-0.0055112	469.2954404939786	55.867	0.047943	55.866	55.842	55.89	-0.00059128	1191	31	0.90387505	0.01838106	0.9023556	367.3626		7.470642	0.010579	-0.000134	0.00015929	NaN	1.072	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4477.7			20444	13705	11786	12132							0.11605476642273516
PSPSPAGG	8	Unmodified	_PSPSPAGG_					0	0	0		nc|ENSG00000101298|O15079|SNPH;ENSG00000101298|ENST00000381867|SNPH	nc|ENSG00000101298|O15079|SNPH	nc|ENSG00000101298|O15079|SNPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3202307637001	1	669.320231	668.312954	1.2997	0.00086992	7.187	0.0048104	8.4867	0.0056803	669.3252867131439	39.066	0.16892	39.071	39.023	39.192	0.0046806	762	91	1.1646824	0.054289818	1.163163	238.05711	0	11.096649						256	8	3	NaN	NaN	NaN	0.8439	1	2456	2456		3.1533	0	1	30120			20445	1312	11787	12133	16211	16211					-0.034469661876528335
PSPTHEAA	8	Unmodified	_PSPTHEAA_					0	0	0		nc|ENSG00000164122|Q8WWX0-2|ASB5;ENSG00000164122|ENST00000296525|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	809.3788082751	1	809.378808	808.371532	1.4627	0.0011839	4.7647	0.0038564	6.2274	0.0050403	809.3826168479194	22.284	0.12049	22.27	22.222	22.342	-0.013731	528	58	1.3052634	0.034092426	1.303744	265.8625	0	6.9441223						142	6	2	NaN	NaN	NaN	0.75561	1	4774	4774		15.175	2.5875	1	11534			20446	4297	11788	12134	16212	16212					-0.04031909613195239
PSPVLVATL	9	Unmodified	_PSPVLVATL_					0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5451453219001	1	896.545145	895.537869	0.88477	0.00079324	0.057005	5.1108E-05	0.94177	0.00084434	896.5444397513684	41.665	0.16846	41.673	41.649	41.817	0.0082588	324	46	1.42687	0.026723742	1.4253505	290.1589	0	5.4343567						132	8	2	NaN	NaN	NaN	0.23112	1	5888	5888		23.334	9.5974	1	9475.4	+		20447	12822	11789	12135	16213	16213					0.08592143562668753
PSPVLVATL	9	Unmodified						0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	896.545145	895.537869	0.88477	0.00079324	0.057005	5.1108E-05	0.94177	0.00084434	896.5444397513684	41.665	0.16846	41.673	41.649	41.817	0.0082588	324	46	1.42687	0.026723742	1.4253505	290.1589		5.4343567	-0.020734	-0.00073772	0.00013126	NaN	23.334	132	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9475.4	+		20448	12822	11789	12135							0.08592143562668753
PSPVSPGG	8	Unmodified	_PSPVSPGG_					0	0	0		ENST00000338779.10_1_16:70695390-70695915:-|nuORF	ENST00000338779.10_1_16:70695390-70695915:-|nuORF	ENST00000338779.10_1_16:70695390-70695915:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3515308921002	1	697.351531	696.344254	1.055	0.00073571	4.7249	0.0032949	5.78	0.0040307	697.3550558698237	29.136	0.12066	29.136	29.112	29.232	0	627	76	1.24593	0.04505074	1.24593	254.45815	0	9.200775						122	6	2	NaN	NaN	NaN	0.84727	1	3166	3166		1.2418	0	1	10591			20449	6536	11790	12136	16214	16214					-0.016063931535541087
PSQMKLAERR	10	Unmodified	_PSQMKLAERR_					0	0	0			REV__ENST00000376741.4_1_17:46005196-46005520:+|nuORF	REV__ENST00000376741.4_1_17:46005196-46005520:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.8924014679666	3	405.892401	1214.65538	1.5475	0.00062813	2.4176	0.00098129	3.9651	0.0016094	405.8940359887488	14.452	0.095817	14.441	14.393	14.489	-0.011218	1491	31	0.7190863	0.018577218	0.71756685	436.92978	0	11.287811						53	5	2	NaN	NaN	NaN	0.72369	1	16185	16185		3.3044	0	1	4528.7	+		20450	11940	11791	12137	16215	16215					0.056633531597981346
PSQPLSSVVV	10	Unmodified	_PSQPLSSVVV_					0	0	0		ENST00000489446.1_1_2:23755466-23866061:+|nuORF;nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29	ENST00000489446.1_1_2:23755466-23866061:+|nuORF	ENST00000489446.1_1_2:23755466-23866061:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.78730689680003	2	506.787307	1011.56006	0.96991	0.00049154	7.7964	0.0039511	8.7663	0.0044427	506.791932848465	20.67	0.096474	20.656	20.632	20.728	-0.014086	1326	52	0.8209676	0.031384945	0.81944823	333.3086	0	12.742126						101	5	2	NaN	NaN	NaN	0.64611	1	8888	8888		11.739	4.1513	1	12165			20451	2233	11792	12138	16216	16216					0.05474323240434842
PSQPPGGG	8	Unmodified	_PSQPPGGG_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3311298010002	1	696.33113	695.323853	1.8454	0.001285	-1.7497	-0.0012184	0.095677	6.6623E-05	696.3295414311948	18.125	0.16795	18.125	18.077	18.245	0	1368	73	0.7950918	0.044401884	0.7950918	162.3874	0	9.068512						203	8	3	NaN	NaN	NaN	0.84897	1	3144	3144		0.27539	0	1	20766			20452	1014	11793	12139	16217	16217					-0.035995638133613284
PSQPPGGG	8	Unmodified						0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	696.33113	695.323853	1.6625	0.0011577	-1.3706	-0.00095438	0.29197	0.00020331	696.3302114483286	18.122	0.16799	18.108	18.084	18.252	-0.013948	1365	82	0.7969414	0.049960196	0.79542196	162.76517		10.203735	-0.0084735	0.00014106	0.00016507	NaN	0.27539	195	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25804			20453	1014	11793	12139							-0.035995638133613284
PSQYPNGSAAQ	11	Unmodified	_PSQYPNGSAAQ_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2569022254	2	560.256902	1118.49925	2.3794	0.0013331	-2.3379	-0.0013099	0.041422	2.3207E-05	560.7582645907729	26.119	0.36202	26.119	26.022	26.384	0	1266	148	0.85786515	0.09022814	0.85786515	347.84155	0	36.585114						852	16	5	NaN	NaN	NaN	0.6875	1	13603	13603		8.2775	0.032722	1	179740			20454	4771	11794	12140	16218	16218					-0.05525813809799729
PSRLWALLALL	11	Unmodified	_PSRLWALLALL_					0	0	0			REV__ENSG00000167702|ENST00000645548|KIFC2	REV__ENSG00000167702|ENST00000645548|KIFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1252.7776048740002	1	1252.7776	1251.77033	1.1907	0.0014917	6.0486	0.0075775	7.2393	0.0090692	1252.78580757078	41.015	0.16818	41.022	40.854	41.022	0.0074959	72	58	1.5758814	0.03355682	1.5743619	319.07736	0	6.794464						193	8	2	NaN	NaN	NaN	0.77843	1	17062	17062		0.51604	0.32355	1	23343	+		20455	10475	11795	12141	16219	16219					0.15451405633280046
PSRPSSYF	8	Unmodified	_PSRPSSYF_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4523075692001	1	940.452308	939.445031	1.8342	0.0017249	-11.768	-0.011067	-9.9336	-0.0093421	940.4417068507809	24.526	0.31363	24.514	24.393	24.707	-0.012392	357	85	1.407258	0.049934745	1.4057386	285.96832	0	10.147217						665	14	4	NaN	NaN	NaN	0.35353	1	6663	6663		38.918	7.3568	1	110560	+		20456	11261	11796	12142	16220	16220					-0.027113611707136442
PSRPSSYF	8	Unmodified						0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	940.452308	939.445031	1.4456	0.0013596	-11.277	-0.010606	-9.8316	-0.0092462	940.4414981957757	24.526	0.41004	24.526	24.381	24.791	0	360	82	1.405474	0.048153877	1.405474	285.60577		9.785339	0.0062606	0.00030657	-0.0001323	NaN	38.918	724	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124880	+		20457	11261	11796	12142							-0.027113611707136442
PSRPSSYF	8	Unmodified						0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	940.452308	939.445031	1.8342	0.0017249	-11.768	-0.011067	-9.9336	-0.0093421	940.4417068507809	24.526	0.31363	24.514	24.393	24.707	-0.012392	357	85	1.407258	0.049934745	1.4057386	285.96832		10.147217	-0.0062606	-0.00015473	0.0001323	NaN	38.918	665	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110560	+		20458	11261	11796	12142							-0.027113611707136442
PSSPGAPE	8	Unmodified	_PSSPGAPE_					0	0	0			REV__nc|ENSG00000204371|Q96KQ7-3|EHMT2	REV__nc|ENSG00000204371|Q96KQ7-3|EHMT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3413601363001	1	741.34136	740.334084	1.4333	0.0010625	6.0243	0.0044661	7.4576	0.0055286	741.3457048171732	24.888	0.16894	24.888	24.864	25.033	0	579	64	1.2747238	0.037769794	1.2747238	260.04028	0	7.7049255						155	8	2	NaN	NaN	NaN	0.80071	1	3911	3911		9.1232	0	1	15300	+		20459	11236	11797	12143	16221	16221					-0.0464700087879919
PSSPGAPE	8	Unmodified						0	0	0			REV__nc|ENSG00000204371|Q96KQ7-3|EHMT2	REV__nc|ENSG00000204371|Q96KQ7-3|EHMT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.34136	740.334084	1.4333	0.0010625	6.0243	0.0044661	7.4576	0.0055286	741.3457048171732	24.888	0.16894	24.888	24.864	25.033	0	579	64	1.2747238	0.037769794	1.2747238	260.04028		7.7049255	0.0062931	0.00021464	0.00075972	NaN	9.1232	155	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15300	+		20460	11236	11797	12143							-0.0464700087879919
PSSPLNKLR	9	Unmodified	_PSSPLNKLR_					0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.30091579855	2	506.300916	1010.58728	1.7915	0.00090704	-1.1339	-0.0005741	0.65759	0.00033294	506.30039933642314	14.237	0.096105	14.237	14.213	14.309	0	1320	43	0.824661	0.025850594	0.824661	334.81244	0	10.495361						70	5	2	NaN	NaN	NaN	0.53317	1	9012	9012		8.2448	2.779	1	5267.4	+		20461	11384	11798	12144	16222	16222					0.0824085157147465
PSSPLNKLR	9	Unmodified						0	0	0			REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	REV__MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.300916	1010.58728	1.7915	0.00090704	-1.1339	-0.0005741	0.65759	0.00033294	506.30039933642314	14.237	0.096105	14.237	14.213	14.309	0	1320	43	0.824661	0.025850594	0.824661	334.81244		10.495361	-0.018057	0.00089318	-0.00016347	NaN	8.2448	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5267.4	+		20462	11384	11798	12144							0.0824085157147465
PSSQLGTEQ	9	Unmodified	_PSSQLGTEQ_					0	0	0		ENST00000606645.1_1_1:2477975-2478440:+|nuORF	ENST00000606645.1_1_1:2477975-2478440:+|nuORF	ENST00000606645.1_1_1:2477975-2478440:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4476161218001	1	946.447616	945.44034	1.508	0.0014273	1.6299	0.0015427	3.138	0.0029699	946.4487441475522	22.524	0.12061	22.511	22.462	22.583	-0.013733	339	58	1.4179583	0.0338825	1.4164388	288.11627	0	6.884613						111	6	2	NaN	NaN	NaN	0.44082	1	6814	6814		12.049	2.3027	1	8804.8			20463	7783	11799	12145	16223	16223					-0.03456290104122672
PSSQNSSSLN	10	Unmodified	_PSSQNSSSLN_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.4592434406002	1	1020.45924	1019.45197	2.2902	0.0023371	6.9967	0.0071399	9.287	0.009477	1020.4654454644211	30.511	0.096518	30.511	30.463	30.56	0	228	55	1.4837929	0.03196478	1.4837929	301.17877	0	6.488159						68	4	2	NaN	NaN	NaN	0.6772	1	9336	9336		9.6116	0	1	7048.7			20464	2167	11800	12146	16224	16224					-0.05698093080786748
PSSSFFEALSQ	11	Unmodified	_PSSSFFEALSQ_					0	0	0		nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-3|KRT80	nc|ENSG00000167767|Q6KB66-3|KRT80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2825856596501	2	600.282586	1198.55062	1.8167	0.0010905	-0.55775	-0.00033481	1.2589	0.00075571	600.2836651687613	23.152	0.1687	23.152	23.055	23.224	0	1164	88	0.9204082	0.053267717	0.9204082	372.89746	0	21.581116						332	8	3	NaN	NaN	NaN	0.73717	1	16417	16417		5.0169	1.4374	1	45662			20465	7111	11801	12147	16225	16225					-0.040714898357464335
PSSSIREL	8	Unmodified	_PSSSIREL_					0	0	0			REV__ENST00000437868.5_1_19:54677596-54677719:-|nuORF	REV__ENST00000437868.5_1_19:54677596-54677719:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4785223197001	1	888.478522	887.471246	1.1737	0.0010428	1.3908	0.0012357	2.5646	0.0022786	888.4782925541787	30.631	0.14477	30.625	30.577	30.722	-0.0057545	414	115	1.3733286	0.06784797	1.3718091	279.30948	0	13.799042						247	7	3	NaN	NaN	NaN	0.69898	1	5787	5787		19.118	0	1	25325	+		20466	12187	11802	12148	16226	16226					0.023009080007682314
PSSSIREL	8	Unmodified						0	0	0			REV__ENST00000437868.5_1_19:54677596-54677719:-|nuORF	REV__ENST00000437868.5_1_19:54677596-54677719:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	888.478522	887.471246	1.1737	0.0010428	1.3908	0.0012357	2.5646	0.0022786	888.4782925541787	30.631	0.14477	30.625	30.577	30.722	-0.0057545	414	115	1.3733286	0.06784797	1.3718091	279.30948		13.799042	-0.0034002	4.5796E-05	-0.0016535	NaN	19.118	247	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25325	+		20467	12187	11802	12148							0.023009080007682314
PSSTSTPSII	10	Unmodified	_PSSTSTPSII_					0	0	0			REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.5149674055002	1	989.514967	988.507691	2.0572	0.0020356	-2.5896	-0.0025624	-0.53237	-0.00052679	989.5125108366519	24.309	0.072432	24.296	24.272	24.344	-0.012749	252	43	1.4695803	0.024885178	1.4680609	298.41855	0	5.0532837						74	4	2	NaN	NaN	NaN	0.76548	1	7997	7997		3.5698	0.41644	1	4736.8	+		20468	12745	11803	12149	16227	16227					0.0129774010682695
PSSTSTPSII	10	Unmodified						0	0	0			REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	989.514967	988.507691	1.7766	0.001758	-1.2425	-0.0012295	0.53412	0.00052852	989.5129114154264	24.309	0.096519	24.309	24.285	24.381	0	258	49	1.4660252	0.028437257	1.4660252	297.69662		5.7745667	0.0065063	0.00062897	-0.0010178	NaN	3.5698	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4933	+		20469	12745	11803	12149							0.0129774010682695
PSSTSTPSII	10	Unmodified						0	0	0			REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	989.514967	988.507691	2.0572	0.0020356	-2.5896	-0.0025624	-0.53237	-0.00052679	989.5125108366519	24.309	0.072432	24.296	24.272	24.344	-0.012749	252	43	1.4695803	0.024885178	1.4680609	298.41855		5.0532837	-0.0065063	-0.000704	0.0010178	NaN	3.5698	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4736.8	+		20470	12745	11803	12149							0.0129774010682695
PSYKEFSALF	10	Unmodified	_PSYKEFSALF_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.80041427205	2	594.800414	1187.58628	0.81595	0.00048533	-2.8352	-0.0016864	-2.0193	-0.0012011	594.7979417741413	28.942	0.16895	28.933	28.861	29.03	-0.0083485	1167	91	0.91857195	0.055125415	0.9170525	372.19266	0	22.33606						224	8	2	NaN	NaN	NaN	0.2504	1	15472	15472		31.198	0.58792	1	61701			20471	2843	11804	12150	16228	16228					-1.4075880926611717E-05
PTAPAAGAPL	10	Unmodified	_PTAPAAGAPL_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;RTN4|p.D1114Efs*4|1|0.15|ENSG00000115310|chr2:54982533-54982534|-/T|frameshift_variant	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4777940381999	1	865.477794	864.470518	2.4945	0.0021589	-1.4526	-0.0012572	1.0419	0.00090172	865.4765740466811	18.532	0.31178	18.532	18.388	18.7	0	459	70	1.3464937	0.04117322	1.3464937	273.96298	0	8.377258						297	14	3	NaN	NaN	NaN	0.17937	1	5589	5589		37.302	2.0059	1	36806			20472	2016	11805	12151	16229	16229					0.03286113351691711
PTCLSVLF	8	Unmodified	_PTCLSVLF_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4644521599	1	879.464452	878.457176	1.2584	0.0011067	-4.8641	-0.0042778	-3.6057	-0.0031711	879.4604025386182	37.097	0.14459	37.097	37.024	37.169	0	414	40	1.3733286	0.02323699	1.3733286	279.35327	0	4.7267456						92	7	2	NaN	NaN	NaN	0.35353	1	5781	5781		38.918	12.186	1	7191.4	+		20473	9575	11806	12152	16230	16230					0.013085392481116287
PTCLSVLF	8	Unmodified	_PTCLSVLF_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4644521599	1	879.464452	878.457176	1.1477	0.0010094	-5.4015	-0.0047505	-4.2538	-0.0037411	879.458884749073	37.07	0.12045	37.072	37.048	37.169	0.0022469	411	49	1.3751161	0.028597951	1.3735967	279.71686	0	5.81723						109	6	2	NaN	NaN	NaN	0.54545	1	5659	5659		28.667	5.3321	1	7627.4	+		20474	9575	11806	12152	16231	16231					0.013085392481116287
PTCLSVLF	8	Unmodified						0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	879.464452	878.457176	1.2584	0.0011067	-4.8641	-0.0042778	-3.6057	-0.0031711	879.4604025386182	37.097	0.14459	37.097	37.024	37.169	0	414	40	1.3733286	0.02323699	1.3733286	279.35327		4.7267456	0.012116	0.00030064	-0.00013402	NaN	38.918	92	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7191.4	+		20475	9575	11806	12152							0.013085392481116287
PTCLSVLF	8	Unmodified						0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	879.464452	878.457176	1.1477	0.0010094	-5.4015	-0.0047505	-4.2538	-0.0037411	879.458884749073	37.07	0.12045	37.072	37.048	37.169	0.0022469	411	49	1.3751161	0.028597951	1.3735967	279.71686		5.81723	-0.012116	-0.00017198	0.00013402	NaN	38.918	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7627.4	+		20476	9575	11806	12152							0.013085392481116287
PTEGFLPEE	9	Unmodified	_PTEGFLPEE_					0	0	0		tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.7400223532	2	509.740022	1017.46549	1.5753	0.00080299	-2.1526	-0.0010973	-0.57731	-0.00029428	509.7382871877974	20.983	0.12031	20.983	20.959	21.079	0	1476	34	0.72837335	0.020427108	0.72837335	295.69278	0	8.292664						70	6	2	NaN	NaN	NaN	0.66529	1	9257	9257		2.1763	0	1	6419.7			20477	13909	11807	12153	16232	16232					-0.04254235301561948
PTEGFLPEE	9	Unmodified						0	0	0		tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	tr|U7SWY0|U7SWY0_FUSNUAmidohydrolase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01211PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.740022	1017.46549	1.336	0.00068099	0.10376	5.2892E-05	1.4397	0.00073388	509.74001153952463	21.128	0.12036	21.114	21.041	21.162	-0.014004	1473	31	0.7302302	0.018567085	0.7287108	296.4466		7.5375366	0.065318	0.0010289	0.00016869	NaN	2.1763	75	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4884.7			20478	13909	11807	12153							-0.04254235301561948
PTGAGAGG	8	Unmodified	_PTGAGAGG_					0	0	0		ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;TULP4-FNDC1|1|fusion	ENST00000301073.3_1_19:56111763-56113741:+|nuORF	ENST00000301073.3_1_19:56111763-56113741:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.2783659490002	1	587.278366	586.271089	1.3063	0.00076713	4.3574	0.002559	5.6637	0.0033262	587.280740929506	32.056	0.14477	32.056	32.008	32.152	0	1245	85	0.87076044	0.05151713	0.87076044	178.47919	0	10.559433						176	7	2	NaN	NaN	NaN	0.84945	1	549	549		0	0	1	22245			20479	4341	11808	12154	16233	16233					-0.03859521876177041
PTGAGAGG	8	Unmodified	_PTGAGAGG_					0	0	0		ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;ENSG00000164694|ENST00000297267|FNDC1;TULP4-FNDC1|1|fusion	ENST00000301073.3_1_19:56111763-56113741:+|nuORF	ENST00000301073.3_1_19:56111763-56113741:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.2783659490002	1	587.278366	586.271089	0.62623	0.00036777	4.7884	0.0028121	5.4146	0.0031799	587.281103787489	32.031	0.1689	32.027	32.003	32.172	-0.0037613	1242	91	0.87260187	0.05519098	0.8710824	178.85661	0	11.312454						189	8	2	NaN	NaN	NaN	0.84945	1	527	527		0	0	1	23112			20480	4341	11808	12154	16234	16234					-0.03859521876177041
PTGPTTLG	8	Unmodified	_PTGPTTLG_					0	0	0			REV__ENSG00000141096|ENST00000268793|DPEP3	REV__ENSG00000141096|ENST00000268793|DPEP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.3933957068002	1	743.393396	742.386119	1.5643	0.0011629	2.7957	0.0020783	4.3601	0.0032413	743.3951177892908	27.374	0.048311	27.374	27.35	27.398	0	621	40	1.2495319	0.02340126	1.2495319	254.8884	0	4.773575						42	3	2	NaN	NaN	NaN	0.8439	1	3951	3951		3.1533	0	1	2447.9	+		20481	9816	11809	12155	16235	16235					0.004621625349727765
PTGPTTLG	8	Unmodified						0	0	0			REV__ENSG00000141096|ENST00000268793|DPEP3	REV__ENSG00000141096|ENST00000268793|DPEP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	743.393396	742.386119	1.5643	0.0011629	2.7957	0.0020783	4.3601	0.0032413	743.3951177892908	27.374	0.048311	27.374	27.35	27.398	0	621	40	1.2495319	0.02340126	1.2495319	254.8884		4.773575	0	0	0	NaN	3.1533	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2447.9	+		20482	9816	11809	12155							0.004621625349727765
PTKAKPKV	8	Unmodified	_PTKAKPKV_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF;nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.5614640881001	1	868.561464	867.554188	-0.56119	-0.00048743	1.2408	0.0010777	0.67957	0.00059025	868.5627113867553	56.923	0.071873	56.922	56.898	56.97	-0.00056458	333	58	1.4215236	0.0338645	1.4200041	289.21274	0	6.889801						87	4	2	NaN	NaN	NaN	0.84782	1	5496	5496		0.92586	0	1	13539			20483	4503	11810	12156	16236	16236					0.11511269519417056
PTKAKPKV	8	Unmodified						0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF;nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	868.561464	867.554188	1.7368	0.0015085	3.0485	0.0026478	4.7853	0.0041563	868.5635835597186	56.924	0.024025	56.924	56.924	56.948	0	336	58	1.419741	0.03387165	1.419741	288.85007		6.8912964	0.0011509	0.0010934	-0.00013155	NaN	0.92586	88	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10953			20484	4503	11810	12156							0.11511269519417056
PTKFGLGVF	9	Unmodified	_PTKFGLGVF_					0	0	0		ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS	ENSG00000040531|ENST00000046640|CTNS	ENSG00000040531|ENST00000046640|CTNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.5454796729002	1	965.54548	964.538203	1.3585	0.0013117	8.4431	0.0081522	9.8017	0.0094639	965.5534525534218	35.94	0.04821	35.94	35.892	35.94	0	246	61	1.4731345	0.03555417	1.4731345	299.24243	0	7.222229						67	3	2	NaN	NaN	NaN	0.27442	1	7473	7473		20.555	2.7751	1	4948.5			20485	527	11811	12157	16237	16237					0.05451563282531424
PTKGGGGW	8	Unmodified	_PTKGGGGW_					0	0	0			REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.1928454056	2	380.192845	758.371138	0.82175	0.00031242	-4.1467	-0.0015765	-3.3249	-0.0012641	380.19114381909174	30.994	0.19311	30.994	30.946	31.139	0	1335	43	0.8154261	0.025870264	0.8154261	332.53787	0	10.55011						140	9	2	NaN	NaN	NaN	0.84876	1	4195	4195		0.39566	0	1	16415	+		20486	11864	11812	12158	16238	16238					-0.017712845423830004
PTKGGGGW	8	Unmodified						0	0	0			REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	380.192845	758.371138	0.82175	0.00031242	-4.1467	-0.0015765	-3.3249	-0.0012641	380.19114381909174	30.994	0.19311	30.994	30.946	31.139	0	1335	43	0.8154261	0.025870264	0.8154261	332.53787		10.55011	-0.0090099	0.00037469	-0.00016397	NaN	0.39566	140	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16415	+		20487	11864	11812	12158							-0.017712845423830004
PTKKKAMFLAS	11	Unmodified	_PTKKKAMFLAS_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.3548337435001	2	611.354834	1220.69511	0.14988	9.1631E-05	1.2992	0.00079426	1.4491	0.00088589	611.3554651215846	31.62	0.2655	31.616	31.495	31.761	-0.0044155	1062	82	0.9827221	0.04939133	0.98120266	398.06134	0	20.00644						420	12	3	NaN	NaN	NaN	0.77378	1	16320	16320		1.3312	0.4053	1	44457	+		20488	9399	11813	12159	16239	16239					0.09359480110538243
PTKKKAMFLAS	11	Unmodified						0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.354834	1220.69511	0.14988	9.1631E-05	1.2992	0.00079426	1.4491	0.00088589	611.3554651215846	31.62	0.2655	31.616	31.495	31.761	-0.0044155	1062	82	0.9827221	0.04939133	0.98120266	398.06134		20.00644	-0.0027452	0.00049258	0.00015503	NaN	1.3312	420	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44457	+		20489	9399	11813	12159							0.09359480110538243
PTLAFIFFKE	10	Unmodified	_PTLAFIFFKE_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.8367997783499	2	606.8368	1211.65905	1.2912	0.00078357	7.8341	0.004754	9.1254	0.0055376	606.84225869425	23.803	0.1445	23.803	23.778	23.923	0	1140	40	0.93509084	0.023850322	0.93509084	378.79938	0	9.661621						148	7	4	NaN	NaN	NaN	0.70677	1	16770	16770		7.5876	0.72439	1	14935	+		20490	8630	11814	12160	16240	16240					0.06168346205299713
PTLAFIFFKE	10	Unmodified						0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	606.8368	1211.65905	1.2912	0.00078357	7.8341	0.004754	9.1254	0.0055376	606.84225869425	23.803	0.1445	23.803	23.778	23.923	0	1140	40	0.93509084	0.023850322	0.93509084	378.79938		9.661621	-0.089768	-0.00058249	0.001677	NaN	7.5876	148	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14935	+		20491	8630	11814	12160							0.06168346205299713
PTLAFIFFKE	10	Unmodified						0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	606.8368	1211.65905	1.1542	0.00070043	8.6129	0.0052266	9.7671	0.005927	606.8427522128045	23.995	0.12057	23.982	23.886	24.006	-0.013048	1143	34	0.9332562	0.02018106	0.93173677	378.05618		8.175201	0.089768	0.00036264	-0.001677	NaN	7.5876	118	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11284	+		20492	8630	11814	12160							0.06168346205299713
PTLDTRKLQQL	11	Unmodified	_PTLDTRKLQQL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.8828012307501	2	656.882801	1311.75105	0.73065	0.00047995	7.5863	0.0049833	8.3169	0.0054632	656.8875870430934	30.849	0.072369	30.849	30.825	30.897	0	1053	73	0.9882094	0.04391998	0.9882094	399.97318	0	17.776367						160	4	3	NaN	NaN	NaN	0.46872	1	18984	18984		19.592	0.25545	1	16670	+		20493	13062	11815	12161	16241	16241					0.10764404551719053
PTLDTRKLQQL	11	Unmodified						0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	656.882801	1311.75105	0.73065	0.00047995	7.5863	0.0049833	8.3169	0.0054632	656.8875870430934	30.849	0.072369	30.849	30.825	30.897	0	1053	73	0.9882094	0.04391998	0.9882094	399.97318		17.776367	0.0034348	-0.00062715	-0.00015464	NaN	19.592	160	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16670	+		20494	13062	11815	12161							0.10764404551719053
PTLDTRKLQQL	11	Unmodified						0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	656.882801	1311.75105	0.93142	0.00061184	8.2727	0.0054342	9.2041	0.006046	656.8885242284775	30.848	0.12069	30.842	30.794	30.915	-0.0057545	1050	73	0.9900381	0.043910444	0.9885187	400.71335		17.772583	-0.0034348	0.00027464	0.00015464	NaN	19.592	169	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15493	+		20495	13062	11815	12161							0.10764404551719053
PTLFLVHR	8	Unmodified	_PTLFLVHR_					0	0	0			REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	328.19927169863337	3	328.199272	981.575986	2.1929	0.0007197	-1.5733	-0.00051635	0.61959	0.00020335	328.19877336579594	19.154	0.072134	19.14	19.116	19.188	-0.014141	1488	37	0.7209441	0.022292614	0.71942466	439.2231	0	13.58139						55	4	2	NaN	NaN	NaN	0.84692	1	7781	7781		0.79988	0	1	5420.9	+		20496	11585	11816	12162	16242	16242					0.08446074267999393
PTLGSHAA	8	Unmodified	_PTLGSHAA_					0	0	0		HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|9|3|sense;HERVH-int_dup1969|chr4:182818108-182818486:+|7.476837218884478|0.2118301363735582|5.14|519.0|6|2|sense;HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|6|2|sense	HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|9|3|sense	HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|9|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.3889790308999	1	753.388979	752.381703	1.6396	0.0012352	-3.5184	-0.0026507	-1.8788	-0.0014155	753.3869355093804	22.115	0.048229	22.101	22.077	22.125	-0.013731	537	58	1.2998781	0.034110665	1.2983587	265.09454	0	6.956482						70	3	2	NaN	NaN	NaN	0.84692	1	4027	4027		1.4396	0	1	6391.3			20497	7815	11817	12163	16243	16243					-0.004393018879682131
PTMSPLASPPS	11	Unmodified	_PTMSPLASPPS_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.77079955285	2	542.7708	1083.52705	0.77391	0.00042006	-4.2122	-0.0022862	-3.4382	-0.0018662	542.7689111386985	31.838	0.096523	31.833	31.785	31.881	-0.0044155	1260	34	0.8615505	0.02026838	0.8600311	349.4731	0	8.221527						85	5	2	NaN	NaN	NaN	0.65577	1	11810	11810		10.36	0.61416	1	9560.1			20498	4700	11818	12164	16244	16244					-0.011376268739468287
PTNPPGAC	8	Unmodified	_PTNPPGAC_					0	0	0		ENST00000561370.5_1_14:68053648-68053949:+|nuORF;ENSG00000054690|ENST00000329153|PLEKHH1	ENST00000561370.5_1_14:68053648-68053949:+|nuORF	ENST00000561370.5_1_14:68053648-68053949:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3345006194	1	756.334501	755.327224	0.8364	0.0006326	-2.8727	-0.0021727	-2.0363	-0.0015401	756.3320331837797	40.296	0.1444	40.296	40.176	40.32	0	669	103	1.2206948	0.061285257	1.2206948	248.92867	0	12.497513						260	7	2	NaN	NaN	NaN	0.84692	1	4157	4157		1.4396	0	1	19442			20499	595	11819	12165	16245	16245					-0.06022637031026079
PTNPPGAC	8	Unmodified						0	0	0		ENST00000561370.5_1_14:68053648-68053949:+|nuORF;ENSG00000054690|ENST00000329153|PLEKHH1	ENST00000561370.5_1_14:68053648-68053949:+|nuORF	ENST00000561370.5_1_14:68053648-68053949:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	756.334501	755.327224	1.8623	0.0014085	-2.1496	-0.0016258	-0.28729	-0.00021729	756.3337829475962	40.078	0.072178	40.084	40.036	40.108	0.0060463	654	43	1.2297117	0.025243282	1.2281922	250.76743		5.14769	-0.10617	0.00045196	0.0037487	NaN	1.4396	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3985.4			20500	595	11819	12165							-0.06022637031026079
PTNWYGNYTKN	11	Unmodified	_PTNWYGNYTKN_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000173482|P28827|PTPRM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3122087663501	2	679.312209	1356.60986	1.1768	0.00079944	2.7733	0.0018839	3.9501	0.0026833	679.314384259296	33.864	0.048244	33.863	33.839	33.887	-0.0018463	1095	40	0.9625867	0.02381432	0.96106726	389.46823	0	9.6354065						44	3	2	NaN	NaN	NaN	0.75376	1	18735	18735		3.9281	0.66711	1	4389.1	+		20501	10678	11820	12166	16246	16246					-0.0541759382156215
PTPAKFHYVF	10	Unmodified	_PTPAKFHYVF_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.8189413762	2	603.818941	1205.62333	1.7881	0.0010797	-1.6353	-0.00098742	0.15281	9.2269E-05	603.8185492958481	28.122	0.19307	28.122	28.074	28.267	0	1161	106	0.9222442	0.06422627	0.9222442	373.6164	0	26.019135						419	9	5	NaN	NaN	NaN	0.37681	1	16629	16629		24.562	9.0993	1	131570			20502	524	11821	12167	16247	16247					0.028743087483007912
PTPAKFHYVF	10	Unmodified						0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	603.818941	1205.62333	0.92215	0.00055681	-1.5432	-0.0009318	-0.62104	-0.00037499	603.8185826568244	28.145	0.26548	28.137	28.04	28.305	-0.0089798	1161	103	0.9222442	0.062414765	0.92072475	373.6164		25.285278	0.0072062	6.7979E-05	-0.00075972	NaN	24.562	494	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129880			20503	524	11821	12167							0.028743087483007912
PTPAQTLSLA	10	Unmodified	_PTPAQTLSLA_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5516872628002	1	998.551687	997.544411	1.8572	0.0018546	4.7843	0.0047773	6.6415	0.0066319	998.5566653229031	34.662	0.193	34.662	34.638	34.831	0	177	70	1.5139546	0.04077673	1.5139546	307.39102	0	8.279266						206	9	2	NaN	NaN	NaN	0.76892	1	8491	8491		3.2116	0	1	37044			20504	906	11822	12168	16248	16248					0.04554036723391164
PTPAQTLSLA	10	Unmodified						0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.551687	997.544411	1.4533	0.0014512	5.5646	0.0055565	7.0179	0.0070077	998.5569021431968	34.66	0.19281	34.66	34.587	34.78	-0.00064468	174	73	1.5157272	0.042542934	1.5142077	307.75092		8.637848	-0.0010026	0.0005077	0.00012654	NaN	3.2116	297	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39350			20505	906	11822	12168							0.04554036723391164
PTPSPGGG	8	Unmodified	_PTPSPGGG_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.1637536151501	2	335.163754	668.312954	1.4128	0.00047352	5.5326	0.0018543	6.9453	0.0023278	335.1655989449498	41.859	0.048077	41.859	41.835	41.883	0	1422	34	0.7617651	0.020387232	0.7617651	311.39502	0	8.333923						39	3	2	NaN	NaN	NaN	0.84945	1	2542	2542		0	0	1	2518	+		20506	13153	11823	12169	16249	16249					-0.03446966187641465
PTPSPGGG	8	Unmodified	_PTPSPGGG_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.1637536151501	2	335.163754	668.312954	0.91002	0.00030501	6.1339	0.0020559	7.044	0.0023609	335.1662389280196	38.924	0.19222	38.924	38.78	38.972	0	1524	64	0.698637	0.03906083	0.698637	285.58942	0	15.967316						244	9	2	NaN	NaN	NaN	0.84945	1	2544	2544		0	0	1	51545	+		20507	13153	11823	12169	16250	16250					-0.03446966187641465
PTPSPGGG	8	Unmodified	_PTPSPGGG_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.1637536151501	2	335.163754	668.312954	0.83765	0.00028075	3.9833	0.0013351	4.821	0.0016158	335.1653247649703	43.487	0.1679	43.498	43.378	43.546	0.01099	1413	37	0.7673241	0.022232234	0.76580465	313.66742	0	9.088104						95	8	2	NaN	NaN	NaN	0.84945	1	2448	2448		0	0	1	10150	+		20508	13153	11823	12169	16251	16251					-0.03446966187641465
PTPSPGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	1.4031	0.00047027	3.8432	0.0012881	5.2463	0.0017584	335.1650861342194	43.657	0.11979	43.657	43.657	43.777	0	1413	43	0.7673241	0.02594322	0.7673241	313.66742		10.605103	0.079484	-4.7104E-05	0.00075972	NaN	0	87	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6040.6	+		20509	13153	11823	12169							-0.03446966187641465
PTPSPGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	1.4128	0.00047352	5.5326	0.0018543	6.9453	0.0023278	335.1655989449498	41.859	0.048077	41.859	41.835	41.883	0	1422	34	0.7617651	0.020387232	0.7617651	311.39502		8.333923	0	0	0	NaN	0	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2518	+		20510	13153	11823	12169							-0.03446966187641465
PTPSPGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	335.163754	668.312954	0.83765	0.00028075	3.9833	0.0013351	4.821	0.0016158	335.1653247649703	43.487	0.1679	43.498	43.378	43.546	0.01099	1413	37	0.7673241	0.022232234	0.76580465	313.66742		9.088104	-0.079484	4.682E-05	-0.00075972	NaN	0	95	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10150	+		20511	13153	11823	12169							-0.03446966187641465
PTRPCVGPS	9	Unmodified	_PTRPCVGPS_					0	0	0		ENST00000524325.5_2_8:143293473-143310920:-|nuORF	ENST00000524325.5_2_8:143293473-143310920:-|nuORF	ENST00000524325.5_2_8:143293473-143310920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.4560127386002	1	913.456013	912.448736	2.0576	0.0018796	4.7224	0.0043137	6.78	0.0061932	913.4608408612911	17.186	0.14383	17.172	17.149	17.292	-0.013569	375	46	1.3965509	0.026774883	1.3950315	283.91373	0	5.4432373						124	7	2	NaN	NaN	NaN	0.44082	1	6154	6154		12.049	1.9971	1	9637.4			20512	7415	11824	12170	16252	16252					-0.01099014668500331
PTSHAQLQPV	10	Unmodified	_PTSHAQLQPV_					0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.28800538855	2	539.288005	1076.56146	1.1352	0.00061222	2.6839	0.0014474	3.8191	0.0020596	539.2900879804431	21.946	0.096418	21.932	21.884	21.98	-0.013895	1251	61	0.8670771	0.036837757	0.8655577	351.74338	0	14.943787						118	5	2	NaN	NaN	NaN	0.68669	1	11523	11523		8.962	1.4216	1	19853	+		20513	10658	11825	12171	16253	16253					0.02623957329183213
PTSHAQLQPV	10	Unmodified						0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.288005	1076.56146	1.8437	0.00099428	0.50304	0.00027128	2.3467	0.0012656	539.2878701495171	22.067	0.12059	22.067	22.019	22.139	0	1251	91	0.8670771	0.055274546	0.8670771	351.7434		22.422974	0.06729	-0.0012062	0.00075972	NaN	8.962	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24425	+		20514	10658	11825	12171							0.02623957329183213
PTSHAQLQPV	10	Unmodified						0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.288005	1076.56146	1.1352	0.00061222	2.6839	0.0014474	3.8191	0.0020596	539.2900879804431	21.946	0.096418	21.932	21.884	21.98	-0.013895	1251	61	0.8670771	0.036837757	0.8655577	351.74338		14.943787	-0.06729	0.001146	-0.00075972	NaN	8.962	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19853	+		20515	10658	11825	12171							0.02623957329183213
PTSSTTLSL	9	Unmodified	_PTSSTTLSL_					0	0	0		ENST00000504457.5_1_5:176693380-176693446:+|nuORF	ENST00000504457.5_1_5:176693380-176693446:+|nuORF	ENST00000504457.5_1_5:176693380-176693446:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4778536177001	1	906.477854	905.470577	2.1096	0.0019123	-0.63189	-0.00057279	1.4777	0.0013395	906.4778409624836	22.814	0.096487	22.814	22.79	22.887	0	375	43	1.3965509	0.024994016	1.3965509	283.94626	0	5.0817566						83	5	2	NaN	NaN	NaN	0.094712	1	6172	6172		36.586	6.9881	1	7616.1			20516	7321	11826	12172	16254	16254					0.01406068561061602
PTTKTSTA	8	Unmodified	_PTTKTSTA_					0	0	0		ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	806.4254241167	1	806.425424	805.418148	1.8503	0.0014921	3.9743	0.003205	5.8246	0.0046971	806.4287533506081	26.867	0.072393	26.867	26.843	26.915	0	459	37	1.3464937	0.021482825	1.3464937	274.27728	0	4.3759766						46	4	2	NaN	NaN	NaN	0.84455	1	4812	4812		2.7852	0.32367	1	2939.9			20517	6370	11827	12173	16255	16255					0.0076553021809786514
PTVIASLLW	9	Unmodified	_PTVIASLLW_					0	0	0		ENST00000289575.9_1_11:74862224-74862383:+|nuORF	ENST00000289575.9_1_11:74862224-74862383:+|nuORF	ENST00000289575.9_1_11:74862224-74862383:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.5873444876	1	999.587344	998.580068	1.405	0.0014044	-1.1584	-0.0011579	0.24658	0.00024648	999.5879220947944	37.215	0.096279	37.217	37.193	37.289	0.0022507	159	76	1.5245869	0.04431784	1.5230675	309.54544	0	8.998108						97	5	2	NaN	NaN	NaN	0.47587	1	8354	8354		10.605	0	1	6504.5			20518	6378	11828	12174	16256	16256					0.08072118971040254
PTVWVSVPI	9	Unmodified	_PTVWVSVPI_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.289485445	2	499.289485	996.564418	1.2706	0.00063439	-5.5431	-0.0027676	-4.2725	-0.0021332	499.2870638563681	19.635	0.16846	19.621	19.549	19.717	-0.014141	1302	64	0.8357362	0.038736105	0.8342168	339.37314	0	15.729828						281	8	3	NaN	NaN	NaN	0.23112	1	8282	8282		23.334	4.2161	1	49651			20519	5406	11829	12175	16257	16257					0.06599832453991894
PVATAPPG	8	Unmodified	_PVATAPPG_					0	0	0			REV__nc|ENSG00000159140|P18583-8|SON	REV__nc|ENSG00000159140|P18583-8|SON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3879163984001	1	709.387916	708.38064	0.99673	0.00070707	5.1137	0.0036276	6.1105	0.0043347	709.3910206524462	28.604	0.096498	28.596	28.547	28.644	-0.0083504	624	70	1.247731	0.041428804	1.2462115	254.74246	0	8.458313						110	5	2	NaN	NaN	NaN	0.84651	1	3334	3334		1.6704	0	1	8863.5	+		20520	10180	11830	12176	16258	16258					0.014784837431420783
PVCPAGGA	8	Unmodified	_PVCPAGGA_					0	0	0		ENST00000392872.7_1_12:104359681-104370748:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF	ENST00000392872.7_1_12:104359681-104370748:+|nuORF	ENST00000392872.7_1_12:104359681-104370748:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16269937015	2	336.162699	670.310846	1.229	0.00041315	7.5554	0.0025398	8.7844	0.002953	336.1653486821783	41.979	0.1919	41.979	41.979	42.171	0	1524	67	0.698637	0.04092306	0.698637	285.5724	0	16.72757						236	9	2	NaN	NaN	NaN	0.83849	1	2602	2602		4.0537	0	1	33716			20521	6762	11831	12177	16259	16259					-0.037497181971275495
PVCPAGGA	8	Unmodified						0	0	0		ENST00000392872.7_1_12:104359681-104370748:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF	ENST00000392872.7_1_12:104359681-104370748:+|nuORF	ENST00000392872.7_1_12:104359681-104370748:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	336.162699	670.310846	1.0221	0.00034361	6.4283	0.002161	7.4505	0.0025046	336.16501289806746	41.953	0.19176	41.962	41.962	42.154	0.0089951	1521	64	0.70049703	0.039065063	0.6989776	286.3327		15.968109	-0.0082883	-0.00048679	0.0001703	NaN	4.0537	253	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32007			20522	6762	11831	12177							-0.037497181971275495
PVEEVPAAI	9	Unmodified	_PVEEVPAAI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5036744376999	1	924.503674	923.496398	1.7574	0.0016248	-0.43753	-0.0004045	1.3199	0.0012203	924.5033029863018	25.877	0.14482	25.865	25.793	25.938	-0.0116	330	64	1.4233059	0.037421107	1.4217864	289.3015	0	7.6062317						281	7	3	NaN	NaN	NaN	0.49672	1	6350	6350		9.746	2.8828	1	32072			20523	5582	11832	12178	16260	16260					0.031589628033202644
PVEEVPAAI	9	Unmodified						0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	924.503674	923.496398	2.2756	0.0021038	-1.703	-0.0015744	0.57261	0.00052938	924.5020319063063	25.853	0.16891	25.853	25.781	25.95	0	330	64	1.4233059	0.037429094	1.4233059	289.3015		7.607849	-0.0061412	-0.0006675	0.00075972	NaN	9.746	263	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32143			20524	5582	11832	12178							0.031589628033202644
PVEKREQAA	9	Unmodified	_PVEKREQAA_					0	0	0		ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.28018035645	2	514.28018	1026.54581	1.5613	0.00080292	6.3754	0.0032787	7.9366	0.0040817	514.2831554455779	23.199	0.048288	23.186	23.138	23.186	-0.013294	1278	67	0.85049206	0.040578544	0.8489726	345.2277	0	16.471436						102	3	2	NaN	NaN	NaN	0.60736	1	9446	9446		5.1889	0.27914	1	11398			20525	4167	11833	12179	16261	16261					0.033596708121422125
PVEVDEGS	8	Unmodified	_PVEVDEGS_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.1901653309	2	416.190165	830.365778	0.92093	0.00038328	4.7707	0.0019855	5.6917	0.0023688	416.1920811338012	35.842	0.16864	35.843	35.794	35.963	0.00053024	1449	40	0.74507743	0.024120152	0.743558	303.38174	0	9.821289						93	8	2	NaN	NaN	NaN	0.82332	1	5023	5023		6.0903	0.62448	1	8093.1	+		20526	9501	11834	12180	16262	16262					-0.056190529155060176
PVEVDEGS	8	Unmodified						0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	416.190165	830.365778	0.92093	0.00038328	4.7707	0.0019855	5.6917	0.0023688	416.1920811338012	35.842	0.16864	35.843	35.794	35.963	0.00053024	1449	40	0.74507743	0.024120152	0.743558	303.38174		9.821289	-0.00053533	0.00063322	0.0010956	NaN	6.0903	93	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8093.1	+		20527	9501	11834	12180							-0.056190529155060176
PVFRITLPVLA	11	Unmodified	_PVFRITLPVLA_					0	0	0		ENSG00000174951|ENST00000645652|FUT1	ENSG00000174951|ENST00000645652|FUT1	ENSG00000174951|ENST00000645652|FUT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1225.7667058367	1	1225.76671	1224.75943	2.1207	0.0025995	0.85434	0.0010472	2.975	0.0036467	1225.7677106998658	35.048	0.12064	35.048	34.999	35.12	0	66	130	1.579413	0.07601702	1.579413	319.86954	0	15.395294						543	6	6	NaN	NaN	NaN	0.77466	1	17104	17104		1.1768	0.37694	1	170070			20528	4968	11835	12181	16263	16263					0.1560400325899991
PVFRITLPVLA	11	Unmodified	_PVFRITLPVLA_					0	0	0		ENSG00000174951|ENST00000645652|FUT1	ENSG00000174951|ENST00000645652|FUT1	ENSG00000174951|ENST00000645652|FUT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1225.7667058367	1	1225.76671	1224.75943	1.7047	0.0020896	0.73079	0.00089577	2.4355	0.0029853	1225.7682712792175	35.022	0.12066	35.022	34.998	35.119	-4.5776E-05	66	118	1.579413	0.06892371	1.5778936	319.86954	0	13.95874						561	6	5	NaN	NaN	NaN	0.77278	1	16422	16422		1.5054	0.81425	1	189580			20529	4968	11835	12181	16264	16264					0.1560400325899991
PVGDSHVD	8	Unmodified	_PVGDSHVD_					0	0	0		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.A204T|1|0.08|ENSG00000180370|chr3:196807815-196807815|G/A|missense_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.1904996819	2	413.1905	824.366446	1.0129	0.00041852	4.4007	0.0018183	5.4136	0.0022369	413.1914282084469	32.828	0.1448	32.828	32.828	32.973	0	1428	55	0.7580582	0.033351958	0.7580582	308.70377	0	13.581909						99	7	2	NaN	NaN	NaN	0.84727	1	5076	5076		1.2418	0.84618	1	8742.9			20530	5193	11836	12182	16265	16265					-0.0527621347580407
PVGGEIFF	8	Unmodified	_PVGGEIFF_					0	0	0			REV__nc|ENSG00000166961|Q8N5U1-2|MS4A15	REV__nc|ENSG00000166961|Q8N5U1-2|MS4A15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4454312773001	1	865.445431	864.438155	1.6644	0.0014405	5.1571	0.0044632	6.8216	0.0059037	865.4502129568148	36.398	0.12064	36.398	36.374	36.495	0	375	34	1.3965509	0.019637108	1.3965509	284.14795	0	3.9954224						67	6	2	NaN	NaN	NaN	0.82797	1	5586	5586		5.4659	0.55612	1	4189.5	+		20531	10453	11837	12183	16266	16266					0.0005132594872065965
PVGGPVLN	8	Unmodified	_PVGGPVLN_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.4301155641001	1	752.430116	751.422839	0.82971	0.0006243	5.4995	0.004138	6.3293	0.0047623	752.4339624657531	33.745	0.14478	33.745	33.697	33.842	0	519	67	1.310647	0.03948605	1.310647	267.29678	0	8.052887						218	7	3	NaN	NaN	NaN	0.84207	1	4090	4090		3.5732	0	1	30768	+		20532	8753	11838	12184	16267	16267					0.037184591515256216
PVGGSHGD	8	Unmodified	_PVGGSHGD_					0	0	0		ENST00000241502.8_1_3:197476625-197476913:+|nuORF	ENST00000241502.8_1_3:197476625-197476913:+|nuORF	ENST00000241502.8_1_3:197476625-197476913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3212933962001	1	725.321293	724.314017	1.5116	0.0010964	-5.0149	-0.0036374	-3.5033	-0.002541	725.317141851721	24.164	0.096478	24.151	24.103	24.199	-0.012749	627	55	1.24593	0.03242433	1.2444105	254.26865	0	6.6171265						114	5	2	NaN	NaN	NaN	0.84651	1	3589	3589		1.6704	0.2308	1	8537.4			20533	6261	11839	12185	16268	16268					-0.05916751818756438
PVGHGLLP	8	Unmodified	_PVGHGLLP_					0	0	0			REV__WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	REV__WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.4617500435	1	789.46175	788.454474	0.12265	9.6829E-05	6.2766	0.0049551	6.3993	0.005052	789.4654828111702	53.624	0.088833	53.623	53.623	53.712	-0.00059128	384	37	1.3911947	0.021427989	1.3896753	283.48492	0	4.366394						64	4	2	NaN	NaN	NaN	0.84876	1	4521	4521		0.39566	0	1	5705.3	+		20534	8682	11840	12186	16269	16269					0.051784519054649536
PVGRVHRL	8	Unmodified	_PVGRVHRL_					0	0	0		ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;nc|ENSG00000246705|Q9BTM1-2|H2AJ	ENSG00000276368|ENST00000333151|H2AC14	ENSG00000276368|ENST00000333151|H2AC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.29068546325	2	467.290685	932.566818	0.93274	0.00043586	-0.40105	-0.00018741	0.53169	0.00024845	467.2904517229464	14.789	0.2642	14.789	14.693	14.957	0	1500	37	0.71351165	0.02230227	0.71351165	290.0111	0	9.064911						204	12	3	NaN	NaN	NaN	0.75561	1	6670	6670		15.175	1.1338	1	22580			20535	5199	11841	12187	16270	16270					0.09783725702311585
PVIETSNQL	9	Unmodified	_PVIETSNQL_					0	0	0		nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ENST00000444273.6_1_6:56954967-57015704:+|nuORF	nc|ENSG00000112200|Q9Y4E5-2|ZNF451	nc|ENSG00000112200|Q9Y4E5-2|ZNF451	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5309518207001	1	1000.53095	999.523675	1.2179	0.0012186	-5.4977	-0.0055006	-4.2798	-0.004282	1000.525076577696	30.922	0.096476	30.922	30.849	30.946	0	210	52	1.4944444	0.030171275	1.4944444	303.42154	0	6.125763						99	5	2	NaN	NaN	NaN	0.29681	1	8570	8570		19.118	4.1054	1	12564			20536	1860	11842	12188	16271	16271					0.023894463437159175
PVITAAAK	8	Unmodified	_PVITAAAK_					0	0	0			REV__UGGT2|p.R1483T|1|0.21|ENSG00000102595|chr13:95833007-95833007|C/G|missense_variant	REV__UGGT2|p.R1483T|1|0.21|ENSG00000102595|chr13:95833007-95833007|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4770657567	1	770.477066	769.469789	1.43	0.0011018	-3.4031	-0.002622	-1.973	-0.0015202	770.4748993798241	27.759	0.16898	27.75	27.726	27.895	-0.009552	576	46	1.2765218	0.026964068	1.2750024	260.22778	0	5.496826						97	8	2	NaN	NaN	NaN	0.84876	1	4278	4278		0.39566	0	1	8496.3	+		20537	13645	11843	12189	16272	16272					0.07583318702654651
PVITAAAK	8	Unmodified						0	0	0			REV__UGGT2|p.R1483T|1|0.21|ENSG00000102595|chr13:95833007-95833007|C/G|missense_variant	REV__UGGT2|p.R1483T|1|0.21|ENSG00000102595|chr13:95833007-95833007|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	770.477066	769.469789	1.43	0.0011018	-3.4031	-0.002622	-1.973	-0.0015202	770.4748993798241	27.759	0.16898	27.75	27.726	27.895	-0.009552	576	46	1.2765218	0.026964068	1.2750024	260.22778		5.496826	0.0068767	-0.00019423	-0.00075972	NaN	0.39566	97	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8496.3	+		20538	13645	11843	12189							0.07583318702654651
PVITVDVSI	9	Unmodified	_PVITVDVSI_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246303001	1	942.550625	941.543348	0.79881	0.00075292	0.77852	0.0007338	1.5773	0.0014867	942.5515516369538	31.549	0.072437	31.549	31.525	31.597	0	219	106	1.4891195	0.062196612	1.4891195	302.59357	0	12.63855						186	4	3	NaN	NaN	NaN	0.17818	1	6855	6855		26.732	1.7706	1	18860			20539	3485	11844	12190	16273	16273					0.070238223544834
PVITVDVSI	9	Unmodified						0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	942.550625	941.543348	0.94986	0.00089529	-0.66344	-0.00062533	0.28642	0.00026997	942.5502292825387	31.548	0.096544	31.544	31.519	31.616	-0.0044174	264	97	1.4624695	0.056862473	1.46095	297.1782		11.554596	-0.002736	-0.00055973	-0.014085	NaN	26.732	178	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18108			20540	3485	11844	12190							0.070238223544834
PVLAQRVDG	9	Unmodified	_PVLAQRVDG_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.77199118360005	2	477.771991	953.529429	1.5535	0.00074223	3.326	0.0015891	4.8796	0.0023313	477.773180898078	20.237	0.072121	20.237	20.213	20.285	0	1413	37	0.7673241	0.022232234	0.7673241	311.7839	0	9.033539						49	4	2	NaN	NaN	NaN	0.67818	1	7173	7173		1.072	0	1	4075.2	+		20541	10513	11845	12191	16274	16274					0.05080589646047429
PVLELQKLVET	11	Unmodified	_PVLELQKLVET_					0	0	0			REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	REV__nc|ENSG00000185250|Q8IXY8-3|PPIL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.87665322035	2	634.876653	1267.73875	2.2636	0.0014371	1.0196	0.00064731	3.2831	0.0020844	634.878178372588	39.668	0.77036	39.673	39.601	40.372	0.0053368	1245	109	0.87076044	0.06625068	0.869241	352.56378	0	26.82434						1939	33	8	NaN	NaN	NaN	0.77378	1	17378	17378		1.3312	0	1	1481900	+		20542	10953	11846	12192	16275	16275					0.11559368088660449
PVLLPNEEEE	10	Unmodified	_PVLLPNEEEE_					0	0	0			REV__FTSJ3|p.E504K|1|0.13|ENSG00000108592|chr17:63821809-63821809|C/T|missense_variant	REV__FTSJ3|p.E504K|1|0.13|ENSG00000108592|chr17:63821809-63821809|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7902435162501	2	584.790244	1167.56593	1.4556	0.00085121	-9.0857	-0.0053132	-7.6301	-0.004462	584.7868833294403	32.876	0.14481	32.876	32.804	32.949	0	1191	76	0.90387505	0.04595518	0.90387505	366.30978	0	18.624084						180	7	2	NaN	NaN	NaN	0.64158	1	15392	15392		12.049	1.4437	1	21618	+		20543	9042	11847	12193	16276	16276					-0.011146230385520539
PVLSFLGPL	9	Unmodified	_PVLSFLGPL_					0	0	0			REV__ENST00000354755.5_1_11:86085825-86086272:+|nuORF	REV__ENST00000354755.5_1_11:86085825-86086272:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.7865786153	2	471.786579	941.558604	0.47292	0.00022312	-0.42386	-0.00019997	0.049061	2.3146E-05	471.7865167582263	33.527	0.072422	33.525	33.525	33.597	-0.0018501	1350	25	0.80618626	0.014786184	0.8046668	327.63382	0	6.009094						43	4	2	NaN	NaN	NaN	0.45297	1	6723	6723		11.548	3.2582	1	2462.4	+		20544	11812	11848	12194	16277	16277					0.0854873394232527
PVLSWRNS	8	Unmodified	_PVLSWRNS_					0	0	0		ENST00000320201.8_1_12:123497168-123498399:-|nuORF	ENST00000320201.8_1_12:123497168-123498399:-|nuORF	ENST00000320201.8_1_12:123497168-123498399:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.75888380835	2	479.758884	957.503215	0.77037	0.00036959	4.2045	0.0020171	4.9749	0.0023867	479.760576405583	56.971	0.095974	56.97	56.922	57.018	-0.00056458	1353	31	0.8043377	0.018490791	0.80281824	326.80423	0	7.512848						42	5	2	NaN	NaN	NaN	0.8439	1	7140	7140		3.1533	0	1	2509.7			20545	6480	11849	12195	16278	16278					0.02276320474561544
PVMLMEPPSHM	11	Unmodified	_PVMLMEPPSHM_					0	0	0		ENSG00000162931|ENST00000366698|TRIM17	ENSG00000162931|ENST00000366698|TRIM17	ENSG00000162931|ENST00000366698|TRIM17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.7954371296	2	634.795437	1267.57632	1.5418	0.00097873	-0.80179	-0.00050897	0.74002	0.00046976	634.7958746454505	21.416	0.24065	21.402	21.258	21.499	-0.014004	1176	67	0.9130621	0.04041654	0.91154265	369.6919	0	16.36438						229	10	3	NaN	NaN	NaN	0.74155	1	17363	17363		4.7291	1.1593	1	24991			20546	4191	11850	12196	16279	16279					-0.046763781809886495
PVNIMELYL	9	Unmodified	_PVNIMELYL_					0	0	0		chr2:113060937-113062453|317|15.32|0.56|4.78|+|0|IL36RN,IL36RN|1;ENSG00000136695|ENST00000393200|IL36RN;chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN	chr2:113060937-113062453|317|15.32|0.56|4.78|+|0|IL36RN,IL36RN|1	chr2:113060937-113062453|317|15.32|0.56|4.78|+|0|IL36RN,IL36RN|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2939105084	2	546.293911	1090.57327	1.5518	0.00084775	7.1427	0.003902	8.6946	0.0047498	546.2978556664036	39.909	0.14459	39.915	39.867	40.012	0.0060463	1311	31	0.83019954	0.018458784	0.8286801	336.72873	0	7.4868774						81	7	2	NaN	NaN	NaN	0.66196	1	12120	12120		2.4615	0.95611	1	4885.7			20547	138	11851	12197	16280	16280					0.031604380281578415
PVNPAQGT	8	Unmodified	_PVNPAQGT_					0	0	0		ENST00000262510.10_2_16:57023474-57051087:+|nuORF	ENST00000262510.10_2_16:57023474-57051087:+|nuORF	ENST00000262510.10_2_16:57023474-57051087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3995437172001	1	783.399544	782.392267	1.6978	0.00133	-9.8011	-0.0076782	-8.1033	-0.0063481	783.3935209800903	28.894	0.096533	28.894	28.87	28.967	0	504	52	1.3196158	0.030490756	1.3196158	268.93497	0	6.2139587						78	5	2	NaN	NaN	NaN	0.84455	1	4522	4522		2.7852	0.32367	1	5097.4			20548	6310	11852	12198	16281	16281					-0.007633192335219974
PVPGAPGN	8	Unmodified	_PVPGAPGN_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073001	1	708.367515	707.360239	0.85527	0.00060584	8.155	0.0057768	9.0103	0.0063826	708.3733483817293	35.892	0.1687	35.892	35.868	36.036	0	738	64	1.179155	0.03797245	1.179155	240.74826	0	7.752823						166	8	2	NaN	NaN	NaN	0.84876	1	3368	3368		0.39566	0	1	13834	+		20549	11053	11853	12199	16282	16282					-0.005146869166651413
PVPGAPGN	8	Unmodified						0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.367515	707.360239	0.85527	0.00060584	8.155	0.0057768	9.0103	0.0063826	708.3733483817293	35.892	0.1687	35.892	35.868	36.036	0	738	64	1.179155	0.03797245	1.179155	240.74826		7.752823	0.00024239	9.9843E-05	-0.00014438	NaN	0.39566	166	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13834	+		20550	11053	11853	12199							-0.005146869166651413
PVPGAPGN	8	Unmodified						0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.367515	707.360239	0.88778	0.00062887	7.8194	0.005539	8.7072	0.0061679	708.3735353643071	35.89	0.1687	35.891	35.819	35.988	0.0011024	735	55	1.1809633	0.032545924	1.1794438	241.11745		6.6449127	-0.00024239	-0.00013792	0.00014438	NaN	0.39566	130	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9283.3	+		20551	11053	11853	12199							-0.005146869166651413
PVPMIHPG	8	Unmodified	_PVPMIHPG_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.22837363215	2	424.228374	846.442194	2.1865	0.00092757	-6.8321	-0.0028984	-4.6457	-0.0019708	424.2254273763912	18.173	0.33583	18.173	18.125	18.46	0	1443	106	0.7487872	0.064861596	0.7487872	304.7983	0	26.402313						474	15	4	NaN	NaN	NaN	0.71635	1	5343	5343		18.034	0.25416	1	105850	+		20552	10874	11854	12200	16283	16283					0.012830921707745802
PVPPEPLLLDQ	11	Unmodified	_PVPPEPLLLDQ_					0	0	0			REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3424462622501	2	609.342446	1216.67034	0.69459	0.00042325	-3.619	-0.0022052	-2.9244	-0.0017819	609.3403481310107	30.824	0.07239	30.818	30.794	30.866	-0.0057564	1143	58	0.9332562	0.034850597	0.93173677	378.0387	0	14.117126						117	4	2	NaN	NaN	NaN	0.688	1	16236	16236		8.2448	1.8149	1	14088	+		20553	12314	11855	12201	16284	16284					0.07067123508795703
PVPPEPLLLDQ	11	Unmodified						0	0	0			REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.342446	1216.67034	0.58366	0.00035565	-3.5021	-0.002134	-2.9185	-0.0017783	609.3409128759456	30.849	0.072395	30.849	30.801	30.873	0	1143	64	0.9332562	0.038523257	0.9332562	378.0387		15.604797	0.015499	8.6488E-05	0.00075972	NaN	8.2448	131	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13288	+		20554	12314	11855	12201							0.07067123508795703
PVPPEPLLLDQ	11	Unmodified						0	0	0			REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.342446	1216.67034	0.69459	0.00042325	-3.619	-0.0022052	-2.9244	-0.0017819	609.3403481310107	30.824	0.07239	30.818	30.794	30.866	-0.0057564	1143	58	0.9332562	0.034850597	0.93173677	378.0387		14.117126	-0.015499	-5.5911E-05	-0.00075972	NaN	8.2448	117	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14088	+		20555	12314	11855	12201							0.07067123508795703
PVPPGGHA	8	Unmodified	_PVPPGGHA_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.3834997225	1	731.3835	730.376223	1.2667	0.00092645	-4.9204	-0.0035987	-3.6537	-0.0026723	731.3795427902371	30.124	0.096535	30.118	30.094	30.19	-0.0064106	573	52	1.2783196	0.03056252	1.2768002	260.8385	0	6.2362366						84	5	2	NaN	NaN	NaN	0.84651	1	3684	3684		1.6704	0	1	7418.4			20556	1061	11856	12202	16285	16285					0.00025019320230512676
PVQADALAL	9	Unmodified	_PVQADALAL_					0	0	0			REV__ENST00000481070.1_1_10:79396211-79397167:-|nuORF	REV__ENST00000481070.1_1_10:79396211-79397167:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.5040087886999	1	897.504009	896.496732	1.7993	0.0016149	-0.30339	-0.00027229	1.4959	0.0013426	897.503793401072	25.322	0.14473	25.31	25.262	25.407	-0.012011	357	67	1.407258	0.03923869	1.4057386	286.1661	0	7.9791565						230	7	3	NaN	NaN	NaN	0.042816	1	5897	5897		49.961	4.7964	1	30910	+		20557	12382	11857	12203	16286	16286					0.04434382523174918
PVQPRYHPTFL	11	Unmodified	_PVQPRYHPTFL_					0	0	0			REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.8669542013	2	677.866954	1353.71936	0.85724	0.0005811	5.0748	0.0034401	5.9321	0.0040212	677.8691937039808	30.269	0.14475	30.263	30.214	30.359	-0.0064106	1089	40	0.96624947	0.023804069	0.96473	390.95862	0	9.63147						151	7	3	NaN	NaN	NaN	0.74794	1	18712	18712		4.3102	0.38204	1	12614	+		20558	12473	11858	12204	16287	16287					0.056644565883971154
PVQVDHPLAR	10	Unmodified	_PVQVDHPLAR_					0	0	0			REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.88049027486664	3	377.88049	1130.61964	1.6775	0.00063389	-7.2762	-0.0027495	-5.5987	-0.0021156	377.87758368163003	24.019	0.16887	24.006	23.982	24.151	-0.012747	1449	43	0.74507743	0.025968552	0.743558	453.0997	0	15.792114						110	8	2	NaN	NaN	NaN	0.76892	1	13656	13656		1.3696	0.48499	1	9790.8	+		20559	12186	11859	12205	16288	16288					0.05955638974455724
PVQVDHPLAR	10	Unmodified						0	0	0			REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	377.88049	1130.61964	1.512	0.00057136	-8.1014	-0.0030614	-6.5894	-0.00249	377.87687378748666	23.899	0.072319	23.899	23.875	23.947	0	1449	34	0.74507743	0.020404935	0.74507743	453.0997		12.408752	-0.053815	-0.00045352	0.00075972	NaN	1.3696	82	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8087.6	+		20560	12186	11859	12205							0.05955638974455724
PVQVDHPLAR	10	Unmodified						0	0	0			REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	377.88049	1130.61964	1.6775	0.00063389	-7.2762	-0.0027495	-5.5987	-0.0021156	377.87758368163003	24.019	0.16887	24.006	23.982	24.151	-0.012747	1449	43	0.74507743	0.025968552	0.743558	453.0997		15.792114	0.053815	0.00048196	-0.00075972	NaN	1.3696	110	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9790.8	+		20561	12186	11859	12205							0.05955638974455724
PVRAGGSD	8	Unmodified	_PVRAGGSD_					0	0	0			REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.69320954635	2	379.69321	757.371866	1.7811	0.00067626	-5.9975	-0.0022772	-4.2164	-0.001601	379.69206782410185	55.22	0.14425	55.22	55.172	55.316	0	1449	55	0.74507743	0.033388138	0.74507743	303.85617	0	13.6163025						332	7	6	NaN	NaN	NaN	0.84692	1	4186	4186		1.4396	0	1	89431	+		20562	12525	11860	12206	16289	16289					-0.016524898933425902
PVRAGGSD	8	Unmodified	_PVRAGGSD_					0	0	0			REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.69320954635	2	379.69321	757.371866	-0.21192	-8.0466E-05	-3.7644	-0.0014293	-3.9764	-0.0015098	379.69333984023143	55.218	0.16824	55.217	55.169	55.338	-0.00061798	1446	55	0.7469324	0.033388138	0.74541295	304.61267	0	13.6163025						336	8	6	NaN	NaN	NaN	0.84692	1	4107	4107		1.4396	0	1	82167	+		20563	12525	11860	12206	16290	16290					-0.016524898933425902
PVRAGGSD	8	Unmodified						0	0	0			REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	379.69321	757.371866	1.7811	0.00067626	-5.9975	-0.0022772	-4.2164	-0.001601	379.69206782410185	55.22	0.14425	55.22	55.172	55.316	0	1449	55	0.74507743	0.033388138	0.74507743	303.85617		13.6163025	0.0013857	-0.00071728	-0.00016778	NaN	1.4396	332	7	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89431	+		20564	12525	11860	12206							-0.016524898933425902
PVRAGGSD	8	Unmodified						0	0	0			REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	REV__ENST00000503611.5_1_4:159092180-159092387:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	379.69321	757.371866	-0.21192	-8.0466E-05	-3.7644	-0.0014293	-3.9764	-0.0015098	379.69333984023143	55.218	0.16824	55.217	55.169	55.338	-0.00061798	1446	55	0.7469324	0.033388138	0.74541295	304.61267		13.6163025	-0.0013857	0.00097848	0.00016778	NaN	1.4396	336	8	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82167	+		20565	12525	11860	12206							-0.016524898933425902
PVRIKLHK	8	Unmodified	_PVRIKLHK_					0	0	0		ENST00000485497.2_1_6:76357395-76357443:+|nuORF	ENST00000485497.2_1_6:76357395-76357443:+|nuORF	ENST00000485497.2_1_6:76357395-76357443:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.6570958078	1	990.657096	989.649819	2.1427	0.0021227	-2.9638	-0.0029361	-0.82111	-0.00081343	990.653450155582	53.779	0.12041	53.779	53.779	53.9	0	198	58	1.5015416	0.03370297	1.5015416	304.9039	0	6.84375						138	6	2	NaN	NaN	NaN	0.84887	1	8222	8222		0.32989	0	1	19755			20566	7235	11861	12207	16291	16291					0.15458042430304886
PVRKGGGG	8	Unmodified	_PVRKGGGG_					0	0	0		SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|17|2|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|39|3|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|17|2|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|17|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.2141121639501	2	364.214112	726.413671	0.039727	1.4469E-05	5.7808	0.0021055	5.8205	0.0021199	364.21588775448885	55.218	0.12025	55.217	55.193	55.314	-0.00061798	1455	37	0.7413668	0.02226597	0.73984736	302.57135	0	9.087341						90	6	3	NaN	NaN	NaN	0.84887	1	3628	3628		0.32989	0	1	7366.7			20567	13698	11862	12208	16292	16292					0.03952110585873925
PVRPSWTL	8	Unmodified	_PVRPSWTL_					0	0	0			REV__ENST00000490921.5_1_1:226551680-226551758:-|nuORF	REV__ENST00000490921.5_1_1:226551680-226551758:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.27162704285007	2	478.271627	954.528701	1.8567	0.00088801	-1.3308	-0.00063651	0.52586	0.0002515	478.271090175466	18.914	0.24025	18.9	18.804	19.044	-0.014059	1533	124	0.6930556	0.076253355	0.6915362	281.6025	0	30.983307						799	11	4	NaN	NaN	NaN	0.75561	1	7055	7055		15.175	0	1	167180	+		20568	12459	11863	12209	16293	16293					0.049617949970070185
PVRPSWTL	8	Unmodified						0	0	0			REV__ENST00000490921.5_1_1:226551680-226551758:-|nuORF	REV__ENST00000490921.5_1_1:226551680-226551758:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.271627	954.528701	1.8567	0.00088801	-1.3308	-0.00063651	0.52586	0.0002515	478.271090175466	18.914	0.24025	18.9	18.804	19.044	-0.014059	1533	124	0.6930556	0.076253355	0.6915362	281.6025		30.983307	0.039722	0.00060897	0.0001707	NaN	15.175	799	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167180	+		20569	12459	11863	12209							0.049617949970070185
PVRRPMQH	8	Unmodified	_PVRRPMQH_					0	0	0			REV__ENSG00000154134|ENST00000397801|ROBO3	REV__ENSG00000154134|ENST00000397801|ROBO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.77962763795006	2	510.779628	1019.5447	1.942	0.00099195	-5.4312	-0.0027742	-3.4892	-0.0017822	511.27715846917914	55.196	0.12028	55.196	55.172	55.292	0	1320	43	0.824661	0.025850594	0.824661	334.77292	0	10.494141						208	6	4	NaN	NaN	NaN	0.8439	1	9351	9351		3.1533	0.69183	1	27926	+		20570	10082	11864	12210	16294	16294					0.03571177962248839
PVRRPMQH	8	Unmodified						0	0	0			REV__ENSG00000154134|ENST00000397801|ROBO3	REV__ENSG00000154134|ENST00000397801|ROBO3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.779628	1019.5447	1.942	0.00099195	-5.4312	-0.0027742	-3.4892	-0.0017822	511.27715846917914	55.196	0.12028	55.196	55.172	55.292	0	1320	43	0.824661	0.025850594	0.824661	334.77292		10.494141	-0.010657	-0.00090433	-0.00016347	NaN	3.1533	208	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27926	+		20571	10082	11864	12210							0.03571177962248839
PVRRPVTRD	9	Unmodified	_PVRRPVTRD_					0	0	0			REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.3227138731502	2	548.322714	1094.63087	1.7596	0.0009648	-9.2956	-0.005097	-7.5361	-0.0041322	548.31764605391	55.22	0.14425	55.22	55.172	55.316	0	1236	64	0.876284	0.03866917	0.876284	355.40424	0	15.683472						333	7	5	NaN	NaN	NaN	0.66529	1	12622	12622		2.1763	0	1	168830	+		20572	12325	11865	12211	16295	16295					0.08734461068615929
PVRRPVTRD	9	Unmodified						0	0	0			REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.322714	1094.63087	1.7596	0.0009648	-9.2956	-0.005097	-7.5361	-0.0041322	548.31764605391	55.22	0.14425	55.22	55.172	55.316	0	1236	64	0.876284	0.03866917	0.876284	355.40424		15.683472	0.0013857	-0.00068736	0.00075972	NaN	2.1763	333	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168830	+		20573	12325	11865	12211							0.08734461068615929
PVRRPVTRD	9	Unmodified						0	0	0			REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.322714	1094.63087	-0.17712	-9.7119E-05	-7.2987	-0.004002	-7.4758	-0.0040991	548.3190125708078	55.218	0.1203	55.217	55.169	55.29	-0.00061798	1236	55	0.876284	0.03313607	0.8747646	355.40424		13.439362	-0.0013857	0.0015026	-0.00075972	NaN	2.1763	303	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149020	+		20574	12325	11865	12211							0.08734461068615929
PVRSTLHSIRA	11	Unmodified	_PVRSTLHSIRA_					0	0	0			REV__ENST00000413990.1_1_1:158146374-158146917:-|nuORF	REV__ENST00000413990.1_1_1:158146374-158146917:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.91056093846674	3	412.910561	1235.70985	1.5981	0.00065988	-5.2371	-0.0021625	-3.639	-0.0015026	412.90860980664615	23.634	0.24097	23.634	23.489	23.73	0	1419	34	0.76361835	0.020382881	0.76361835	463.8996	0	12.382629						137	11	2	NaN	NaN	NaN	0.63891	1	17425	17425		11.467	4.6596	1	14262	+		20575	12079	11866	12212	16296	16296					0.1014268830290348
PVRTCLGA	8	Unmodified	_PVRTCLGA_					0	0	0		ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	816.4396343929001	1	816.439634	815.432358	2.5381	0.0020722	6.6185	0.0054036	9.1566	0.0074758	816.4450396162161	21.633	0.072088	21.619	21.595	21.667	-0.013895	543	31	1.296287	0.017959714	1.2947675	263.9959	0	3.6575928						46	4	2	NaN	NaN	NaN	0.81756	1	4857	4857		6.8632	1.3974	1	2856			20576	6742	11867	12213	16297	16297					0.01725904165391512
PVRTCLGA	8	Unmodified						0	0	0		ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	816.439634	815.432358	2.1498	0.0017552	7.8218	0.0063861	9.9717	0.0081413	816.4452479834189	21.633	0.07234	21.633	21.609	21.681	0	546	34	1.294491	0.019754529	1.294491	263.63016		4.0231323	0.0069691	0.00056775	-0.00013822	NaN	6.8632	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4068.1			20577	6742	11867	12213							0.01725904165391512
PVRYPNSTRSS	11	Unmodified	_PVRYPNSTRSS_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3256504926001	2	632.32565	1262.63675	1.8125	0.0011461	-5.1624	-0.0032643	-3.3499	-0.0021182	632.322171562966	25.274	0.12063	25.274	25.25	25.371	0	1140	61	0.93509084	0.036682904	0.93509084	378.62714	0	14.853241						135	6	2	NaN	NaN	NaN	0.76937	1	18057	18057		2.1026	0	1	12417	+		20578	8459	11868	12214	16298	16298					0.015935147896016133
PVRYPNSTRSS	11	Unmodified						0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.32565	1262.63675	1.8125	0.0011461	-5.1624	-0.0032643	-3.3499	-0.0021182	632.322171562966	25.274	0.12063	25.274	25.25	25.371	0	1140	61	0.93509084	0.036682904	0.93509084	378.62714		14.853241	0	0	0	NaN	2.1026	135	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12417	+		20579	8459	11868	12214							0.015935147896016133
PVSDVRVVS	9	Unmodified	_PVSDVRVVS_					0	0	0			REV__ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	REV__ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.5363715496002	1	957.536372	956.529095	1.4031	0.0013435	1.9182	0.0018367	3.3213	0.0031803	957.5392019429245	26.963	0.024143	26.952	26.952	26.976	-0.010645	258	79	1.4660252	0.04624486	1.4645058	297.83344	0	9.394989						86	2	2	NaN	NaN	NaN	0.61413	1	7115	7115		4.9097	0.94122	1	10821	+		20580	8142	11869	12215	16299	16299					0.04909169926202139
PVSFFIGII	9	Unmodified	_PVSFFIGII_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|28|2|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|28|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5815308282002	1	992.581531	991.574254	1.8429	0.0018292	-0.091109	-9.0433E-05	1.7518	0.0017388	992.5815913146944	38.754	0.31236	38.758	38.686	38.998	0.0040245	177	94	1.5139546	0.054971695	1.5124352	307.41626	0	11.162262						630	14	4	NaN	NaN	NaN	0.03623	1	8126	8126		52.758	2.9254	1	134810	+		20581	13034	11870	12216	16300	16300					0.07813020459389008
PVSPIRFA	8	Unmodified	_PVSPIRFA_					0	0	0		DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.76089518105	2	443.760895	885.507237	1.3069	0.00057995	0.37657	0.00016711	1.6835	0.00074706	443.76111837713717	25.322	0.072348	25.322	25.298	25.371	0	1245	58	0.87076044	0.03498262	0.87076044	354.1988	0	14.229858						103	4	2	NaN	NaN	NaN	0.82797	1	5883	5883		5.4659	2.3125	1	13658			20582	267	11871	12217	16301	16301					0.0599040996827398
PVSPIRFA	8	Unmodified						0	0	0		DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	DNAJC22|p.L76V|1|0.13|ENSG00000178401|chr12:49349098-49349098|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	443.760895	885.507237	1.5668	0.00069529	0.62145	0.00027578	2.1883	0.00097107	443.7612023589689	25.346	0.12061	25.334	25.31	25.431	-0.012011	1239	55	0.87444305	0.033143222	0.8729236	355.69675		13.481659	0.0059139	8.779E-05	0.0010816	NaN	5.4659	112	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11711			20583	267	11871	12217							0.0599040996827398
PVSREWTL	8	Unmodified	_PVSREWTL_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.26654166495	2	494.266542	986.51853	0.82486	0.0004077	0.1872	9.2524E-05	1.0121	0.00050023	494.2663080784092	20.67	0.31322	20.656	20.584	20.897	-0.014086	1296	70	0.8394264	0.042452812	0.83790696	340.91885	0	17.241486						519	14	4	NaN	NaN	NaN	0.36826	1	7936	7936		38.131	2.0945	1	96875			20584	7185	11872	12218	16302	16302					0.024731872717552505
PVTDLPLAV	9	Unmodified	_PVTDLPLAV_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5400599440001	1	924.54006	923.532783	1.18	0.001091	-3.1543	-0.0029163	-1.9743	-0.0018253	924.5386697986794	27.952	0.048246	27.943	27.919	27.967	-0.009552	342	40	1.4161754	0.02318275	1.4146559	287.852	0	4.7121277						53	3	2	NaN	NaN	NaN	0.56671	1	6359	6359		6.8632	0	1	4924.6	+		20585	13237	11873	12219	16303	16303					0.06795839700043871
PVTEAQQLL	9	Unmodified	_PVTEAQQLL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7794818647	2	499.779482	997.544411	1.7659	0.00088258	-3.8452	-0.0019218	-2.0793	-0.0010392	499.7774151068944	21.802	0.072201	21.802	21.778	21.85	0	1308	70	0.83204526	0.042448223	0.83204526	337.86978	0	17.23703						146	4	3	NaN	NaN	NaN	0.18779	1	8487	8487		26.115	1.1539	1	18998			20586	2037	11874	12220	16304	16304					0.04554036723379795
PVTEAQQLL	9	Unmodified						0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion;BIRC6-SPAST|2|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	499.779482	997.544411	1.1419	0.00057069	-4.5506	-0.0022743	-3.4087	-0.0017036	499.7764264267296	21.778	0.12032	21.764	21.74	21.86	-0.013895	1314	76	0.8283535	0.04613936	0.8268341	336.37067		18.7359	-0.019056	-0.00041684	-0.0026056	NaN	26.115	189	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21036			20587	2037	11874	12220							0.04554036723379795
PVTSARGEK	9	Unmodified	_PVTSARGEK_					0	0	0			REV__ENST00000521369.2_1_8:107284567-107284666:+|nuORF	REV__ENST00000521369.2_1_8:107284567-107284666:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5159704585001	1	944.51597	943.508694	1.6479	0.0015565	-3.9291	-0.0037111	-2.2811	-0.0021546	944.5115368463686	26.553	0.048288	26.553	26.553	26.601	0	279	82	1.4535767	0.048061848	1.4535767	295.3623	0	9.766022						81	3	2	NaN	NaN	NaN	0.20577	1	6911	6911		24.961	0	1	10063	+		20588	12600	11875	12221	16305	16305					0.034679992663768644
PVVGAVGG	8	Unmodified	_PVVGAVGG_					0	0	0		ENST00000538031.5_2_10:70481047-70481137:+|nuORF	ENST00000538031.5_2_10:70481047-70481137:+|nuORF	ENST00000538031.5_2_10:70481047-70481137:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3773517121002	1	655.377352	654.370075	-0.67501	-0.00044239	9.6091	0.0062976	8.9341	0.0058552	655.383186195656	59.226	0.1198	59.226	59.178	59.298	-0.00045776	699	58	1.2026466	0.03430438	1.2011272	245.92188	0	7.0147095						126	6	2	NaN	NaN	NaN	0.84945	1	2080	2080		0	0	1	9105.1			20589	7482	11876	12222	16306	16306					0.02906501088727964
PVVHKPGL	8	Unmodified	_PVVHKPGL_					0	0	0		ENST00000504717.1_1_22:50941822-50943237:-|nuORF	ENST00000504717.1_1_22:50941822-50943237:-|nuORF	ENST00000504717.1_1_22:50941822-50943237:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.76343787	2	423.763438	845.512323	1.7114	0.00072522	-2.0508	-0.00086906	-0.33944	-0.00014384	423.76210905446436	25.78	0.16895	25.769	25.721	25.89	-0.0116	1377	73	0.7895419	0.044406712	0.78802246	321.39334	0	18.076324						161	8	3	NaN	NaN	NaN	0.80071	1	5201	5201		9.1232	0.83292	1	17238			20590	7322	11877	12223	16307	16307					0.08338713830892175
PVVLTFKG	8	Unmodified	_PVVLTFKG_					0	0	0			REV__ENSG00000145708|ENST00000274368|CRHBP	REV__ENSG00000145708|ENST00000274368|CRHBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	860.5240159493002	1	860.524016	859.516739	1.4577	0.0012544	-0.6466	-0.00055642	0.81109	0.00069796	860.5245308328762	34.107	0.072399	34.107	34.083	34.155	0	378	43	1.3947657	0.024996638	1.3947657	283.8102	0	5.0863647						67	4	2	NaN	NaN	NaN	0.8439	1	5528	5528		3.1533	0	1	4722.4	+		20591	9932	11878	12224	16308	16308					0.08136178253812432
PVYLDLAYL	9	Unmodified	_PVYLDLAYL_					0	0	0		nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S;ENST00000601097.1_1_19:17843916-17845234:+|nuORF	nc|ENSG00000130479|Q66K74-2|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5819247586999	1	1066.58192	1065.57465	1.5278	0.0016296	-1.038	-0.0011071	0.48984	0.00052246	1066.5806709626493	44.064	0.1916	44.064	43.992	44.184	0	81	73	1.5705823	0.04240334	1.5705823	318.611	0	8.60202						226	9	2	NaN	NaN	NaN	0.22308	1	11373	11373		23.85	3.295	1	17859			20592	2645	11879	12225	16309	16309					0.044483953885674055
PWAGAPAA	8	Unmodified	_PWAGAPAA_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.3726006851999	1	740.372601	739.365324	1.7388	0.0012874	-11.454	-0.0084799	-9.7147	-0.0071925	740.3639539389303	24.454	0.14479	24.441	24.393	24.537	-0.012749	573	55	1.2783196	0.032361984	1.2768002	260.78012	0	6.6019287						88	7	2	NaN	NaN	NaN	0.83849	1	3825	3825		4.0537	0	1	6485.4	+		20593	9213	11880	12226	16310	16310					-0.0147838305406367
PWCLWKGLWLS	11	Unmodified	_PWCLWKGLWLS_					0	0	0			REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.8628259511001	2	694.862826	1387.7111	0.59502	0.00041346	-9.937	-0.0069049	-9.342	-0.0064914	694.8546850066217	35.408	0.12046	35.409	35.385	35.505	0.00053024	1074	49	0.9754029	0.029283106	0.97388345	394.56454	0	11.845428						140	6	3	NaN	NaN	NaN	0.64343	1	19028	19028		11.17	0.20522	1	8982.4	+		20594	12006	11881	12227	16311	16311					0.03275186347445924
PWCLWKGLWLS	11	Unmodified						0	0	0			REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	694.862826	1387.7111	0.63184	0.00043904	-8.2865	-0.005758	-7.6547	-0.0053189	694.85828652409	35.41	0.12061	35.41	35.385	35.506	0	1074	61	0.9754029	0.036596	0.9754029	394.56454		14.803589	0.00046819	0.0013539	0.00075972	NaN	11.17	127	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9233.8	+		20595	12006	11881	12227							0.03275186347445924
PWCLWKGLWLS	11	Unmodified						0	0	0			REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	REV__ENST00000395449.7_1_11:47187835-47198404:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	694.862826	1387.7111	0.59502	0.00041346	-9.937	-0.0069049	-9.342	-0.0064914	694.8546850066217	35.408	0.12046	35.409	35.385	35.505	0.00053024	1074	49	0.9754029	0.029283106	0.97388345	394.56454		11.845428	-0.00046819	-0.00093989	-0.00075972	NaN	11.17	140	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8982.4	+		20596	12006	11881	12227							0.03275186347445924
PWDITVLVN	9	Unmodified	_PWDITVLVN_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000482114.1_1_4:123130334-123145991:+|nuORF	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5724227048997	1	1056.57242	1055.56515	1.7328	0.0018309	2.8495	0.0030107	4.5824	0.0048416	1056.576064665768	36.228	0.09647	36.229	36.181	36.277	0.0011024	90	100	1.5652816	0.05834472	1.5637622	317.57416	0	11.837341						233	5	3	NaN	NaN	NaN	0.12945	1	10683	10683		31.561	5.4461	1	49517			20597	3181	11882	12228	16312	16312					0.039586271030202624
PWFHTVHH	8	Unmodified	_PWFHTVHH_					0	0	0			REV__ENSG00000151090|ENST00000646209|THRB	REV__ENSG00000151090|ENST00000646209|THRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7592181593501	2	530.759218	1059.50388	1.4958	0.00079389	1.7701	0.00093952	3.2659	0.0017334	530.7607760152341	16.323	0.14385	16.31	16.262	16.406	-0.012995	1293	85	0.84127116	0.051622987	0.8397517	341.34424	0	20.945953						204	7	2	NaN	NaN	NaN	0.76633	1	10819	10819		13.737	2.5667	1	36864	+		20598	10020	11883	12229	16313	16313					-0.023488400857104352
PWFKIIAATF	10	Unmodified	_PWFKIIAATF_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3395096428	2	597.33951	1192.66447	0.54149	0.00032345	-1.4888	-0.00088934	-0.94734	-0.00056589	597.3383019439334	31.477	0.14482	31.477	31.428	31.573	0	1134	76	0.9387595	0.04585117	0.9387595	380.35376	0	18.577362						196	7	3	NaN	NaN	NaN	0.13684	1	16234	16234		40.957	29.992	1	27672			20599	711	11884	12230	16314	16314					0.0758406978777657
PWFKSTSVILF	11	Unmodified	_PWFKSTSVILF_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8686312230001	2	662.868631	1323.72271	1.37	0.00090815	-1.8899	-0.0012528	-0.51986	-0.0003446	662.8674470459995	30.753	0.19305	30.753	30.704	30.897	0	1098	94	0.960755	0.05674517	0.960755	388.82452	0	22.96521						481	9	5	NaN	NaN	NaN	0.0043425	1	19161	19161		74.794	42.016	1	178370			20600	638	11885	12231	16315	16315					0.07379706642427664
PWFKSTSVILF	11	Unmodified	_PWFKSTSVILF_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8686312230001	2	662.868631	1323.72271	1.8497	0.0012261	-3.6497	-0.0024193	-1.8	-0.0011932	662.8660157179406	30.8	0.24133	30.794	30.722	30.963	-0.0057545	1098	88	0.960755	0.053084254	0.9592356	388.82452	0	21.483582						552	11	5	NaN	NaN	NaN	0.043578	1	18306	18306		51.467	26.905	1	181070			20601	638	11885	12231	16316	16316					0.07379706642427664
PWFQNSSVILF	11	Unmodified	_PWFQNSSVILF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3480629564001	2	669.348063	1336.68157	1.0395	0.0006958	-2.8086	-0.0018799	-1.7691	-0.0011841	669.3459438144869	35.53	0.26532	35.53	35.482	35.747	0	1080	67	0.9717421	0.040277243	0.9717421	393.2317	0	16.29889						455	12	5	NaN	NaN	NaN	0.0040393	1	19357	19357		75.089	46.594	1	95633			20602	1015	11886	12232	16317	16317					0.026699456029518842
PWFQNSSVILF	11	Unmodified	_PWFQNSSVILF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3480629564001	2	669.348063	1336.68157	0.82679	0.00055341	-2.6587	-0.0017796	-1.8319	-0.0012262	669.3463902583885	35.529	0.26531	35.529	35.481	35.746	0.00053024	1080	67	0.9717421	0.040277243	0.97022265	393.2317	0	16.29889						469	12	4	NaN	NaN	NaN	0.046084	1	18493	18493		50.831	31.712	1	98812			20603	1015	11886	12232	16318	16318					0.026699456029518842
PWGPTDID	8	Unmodified	_PWGPTDID_					0	0	0		nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4097740525	1	900.409774	899.402498	1.3949	0.001256	-11.354	-0.010223	-9.9588	-0.008967	900.3988803893899	27.156	0.12067	27.146	27.122	27.242	-0.010126	345	49	1.4143922	0.028531194	1.4128729	287.60287	0	5.801544						135	6	3	NaN	NaN	NaN	0.65075	1	5933	5933		22.126	3.008	1	11981			20604	8006	11887	12233	16319	16319					-0.051227562989538455
PWGPTDID	8	Unmodified						0	0	0		nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	nc|ENSG00000188707|Q96FA7|ZBED10P	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.409774	899.402498	1.465	0.0013191	-12.834	-0.011556	-11.369	-0.010237	900.3970339339736	27.133	0.096531	27.133	27.109	27.205	0	348	58	1.412609	0.0338825	1.412609	287.24026		6.889679	-0.0066061	-0.00079516	-0.00013193	NaN	22.126	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12760			20605	8006	11887	12233							-0.051227562989538455
PWKDCQPLL	9	Unmodified	_PWKDCQPLL_					0	0	0		ENST00000535177.1_1_11:61120996-61124198:-|nuORF;ENST00000540139.5_3_11:61120480-61121493:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5604778100999	1	1099.56048	1098.5532	1.3755	0.0015125	-9.8221	-0.0108	-8.4466	-0.0092875	1099.5497196021888	24.381	0.09651	24.381	24.333	24.43	0	111	43	1.5529068	0.024756193	1.5529068	314.90442	0	5.020172						102	5	2	NaN	NaN	NaN	0.35794	1	12785	12785		15.463	0.28729	1	8134.5			20606	7466	11888	12234	16320	16320					0.007866870882025978
PWKDCQPLL	9	Unmodified						0	0	0		ENST00000535177.1_1_11:61120996-61124198:-|nuORF;ENST00000540139.5_3_11:61120480-61121493:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1099.56048	1098.5532	2.0087	0.0022087	-5.9272	-0.0065173	-3.9185	-0.0043086	1099.5536829835848	24.381	0.14482	24.368	24.32	24.465	-0.012749	108	43	1.5546752	0.024756193	1.5531558	315.263		5.020172	-0.0064931	0.0023579	0.00012448	NaN	15.463	106	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8077			20607	7466	11888	12234							0.007866870882025978
PWLEASFTAA	10	Unmodified	_PWLEASFTAA_					0	0	0		nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5360371985998	1	1092.53604	1091.52876	1.8831	0.0020573	6.7968	0.0074257	8.6798	0.009483	1092.5441174656266	32.756	0.26543	32.756	32.659	32.925	0	87	109	1.5670487	0.06364548	1.5670487	317.7975	0	12.907318						434	12	3	NaN	NaN	NaN	0.61246	1	12465	12465		14.042	0.57854	1	80172			20608	4199	11889	12235	16321	16321					-0.013342497936719155
PWLFDAPKF	9	Unmodified	_PWLFDAPKF_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.79493496365	2	560.794935	1119.57532	2.0714	0.0011617	-0.45073	-0.00025277	1.6207	0.00090888	560.7939041790437	29.86	0.24133	29.86	29.787	30.029	0	1260	121	0.8615505	0.07359594	0.8615505	349.3318	0	29.84085						856	11	4	NaN	NaN	NaN	0.010404	1	13655	13655		91.563	49.246	1	166670			20609	3694	11890	12236	16322	16322					0.0203123482826868
PWLFDAPKF	9	Unmodified	_PWLFDAPKF_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.79493496365	2	560.794935	1119.57532	1.3141	0.00073697	0.31506	0.00017668	1.6292	0.00091365	560.7951132726042	29.859	0.21714	29.852	29.803	30.021	-0.0070648	1257	130	0.86339295	0.079102814	0.8618735	350.0788	0	32.0737						772	10	4	NaN	NaN	NaN	0.0073225	1	13258	13258		97.85	58.932	1	149810			20610	3694	11890	12236	16323	16323					0.0203123482826868
PWLWSMLYS	9	Unmodified	_PWLWSMLYS_					0	0	0			REV__ENST00000219139.7_1_16:67181483-67181936:+|nuORF	REV__ENST00000219139.7_1_16:67181483-67181936:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.85992725673333	3	394.859927	1181.55795	1.3826	0.00054594	3.2947	0.0013009	4.6773	0.0018469	394.86042323233954	19.108	0.16796	19.108	19.084	19.252	0	1470	43	0.7320868	0.025993943	0.7320868	444.96884	0	15.799347						161	8	3	NaN	NaN	NaN	0.67818	1	15875	15875		0.44583	0.15182	1	15015	+		20611	11463	11891	12237	16324	16324					-0.025564287690258425
PWNFHEPW	8	Unmodified	_PWNFHEPW_					0	0	0		nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1	nc|ENSG00000170266|P16278-3|GLB1	nc|ENSG00000170266|P16278-3|GLB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.4948410859	1	1112.49484	1111.48756	1.8339	0.0020402	6.6933	0.0074462	8.5272	0.0094864	1112.5021690115038	29.184	0.048271	29.184	29.184	29.232	0	66	49	1.579413	0.028259993	1.579413	320.23315	0	5.729828						52	3	2	NaN	NaN	NaN	0.8439	1	13333	13333		3.1533	0.97701	1	3492.6			20612	4719	11892	12238	16325	16325					-0.06371966042479471
PWNYTFSL	8	Unmodified	_PWNYTFSL_					0	0	0		ENST00000393879.3_1_17:40173389-40173515:+|nuORF	ENST00000393879.3_1_17:40173389-40173515:+|nuORF	ENST00000393879.3_1_17:40173389-40173515:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.24781759555	2	514.247818	1026.48108	2.2695	0.0011671	-9.2081	-0.0047352	-6.9386	-0.0035681	514.243122466822	22.621	0.24123	22.621	22.573	22.814	0	1335	46	0.8154261	0.027710617	0.8154261	330.99423	0	11.248169						290	11	4	NaN	NaN	NaN	0.67593	1	9621	9621		20.555	2.7565	1	80924			20613	6772	11893	12239	16326	16326					-0.031099039938681017
PWPCDKKGFDD	11	Unmodified	_PWPCDKKGFDD_					0	0	0			REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1	REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.289887763	2	654.289888	1306.56522	0.68247	0.00044653	4.8644	0.0031827	5.5469	0.0036293	654.2939066594854	28.363	0.096508	28.354	28.305	28.402	-0.0089779	1128	46	0.9424274	0.027507722	0.94090796	381.45892	0	11.134094						101	5	2	NaN	NaN	NaN	0.74794	1	18042	18042		4.3102	1.4207	1	11152	+		20614	10584	11894	12240	16327	16327					-0.07579740959272385
PWPLALAL	8	Unmodified	_PWPLALAL_					0	0	0			REV__ENST00000560821.1_1_15:91352032-91358506:+|nuORF	REV__ENST00000560821.1_1_15:91352032-91358506:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.76818889689997	2	440.768189	879.521825	0.79918	0.00035225	-6.2418	-0.0027512	-5.4426	-0.0023989	440.76533320383754	21.079	0.12037	21.065	21.017	21.138	-0.014004	1371	40	0.79324204	0.024047077	0.7917226	322.7002	0	9.782623						130	6	3	NaN	NaN	NaN	0.81214	1	5675	5675		7.5902	0	1	20632	+		20615	12784	11895	12241	16328	16328					0.07724482116407216
PWRGRRRGRA	10	Unmodified	_PWRGRRRGRA_					0	0	0		ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3713954002501	2	634.371395	1266.72824	0.88057	0.00055861	8.6649	0.0054968	9.5455	0.0060554	634.3768026913409	38.972	0.12016	38.972	38.852	38.972	0	1221	25	0.885486	0.014719188	0.885486	358.52908	0	5.959717						59	6	2	NaN	NaN	NaN	0.77918	1	18165	18165		0.69115	0	1	3460.8			20616	6392	11896	12242	16329	16329					0.1055428778811347
PWTARPPSRTR	11	Unmodified	_PWTARPPSRTR_					0	0	0		ENST00000456357.6_1_7:97881701-97920552:+|nuORF	ENST00000456357.6_1_7:97881701-97920552:+|nuORF	ENST00000456357.6_1_7:97881701-97920552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8652771796	2	662.865277	1323.716	0.87725	0.0005815	-1.9532	-0.0012947	-1.076	-0.00071321	662.8630904539332	31.38	0.072412	31.38	31.356	31.428	0	1101	37	0.95892316	0.02198124	0.95892316	388.0832	0	8.895966						45	4	2	NaN	NaN	NaN	0.77278	1	19159	19159		1.5054	0	1	3308			20617	7062	11897	12243	16330	16330					0.06709206534378609
PWTARPPSRTR	11	Unmodified						0	0	0		ENST00000456357.6_1_7:97881701-97920552:+|nuORF	ENST00000456357.6_1_7:97881701-97920552:+|nuORF	ENST00000456357.6_1_7:97881701-97920552:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	662.865277	1323.716	1.3555	0.0008985	1.0185	0.00067512	2.374	0.0015736	663.36686971245	31.427	0.26545	31.423	31.206	31.471	-0.0044155	1101	37	0.95892316	0.02198124	0.9574037	388.08316		8.895966	0.021383	0.0015934	-0.00075972	NaN	1.5054	145	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9217.4			20618	7062	11897	12243							0.06709206534378609
PWVEVVLA	8	Unmodified	_PWVEVVLA_					0	0	0		MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant;ENSG00000135953|ENST00000258436|MFSD9	MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5189305714	1	912.518931	911.511654	2.5533	0.00233	-0.85037	-0.00077598	1.703	0.001554	912.5177009807815	34.275	0.048244	34.274	34.249	34.298	-0.0012474	342	40	1.4161754	0.023180246	1.4146559	287.90775	0	4.7125244						43	3	2	NaN	NaN	NaN	0.59262	1	6140	6140		25.752	9.3153	1	2221.7			20619	2978	11898	12244	16331	16331					0.05235874391178186
PWVEVVLA	8	Unmodified						0	0	0		MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant;ENSG00000135953|ENST00000258436|MFSD9	MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.518931	911.511654	1.7695	0.0016147	-2.5744	-0.0023492	-0.80491	-0.0007345	912.516268543469	34.276	0.024117	34.276	34.276	34.3	0	345	37	1.4143922	0.02139604	1.4143922	287.54526		4.349823	0.001175	-0.00088508	-0.00013183	NaN	25.752	38	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2590.1			20620	2978	11898	12244							0.05235874391178186
PWYCMHAML	9	Unmodified	_PWYCMHAML_					0	0	0		ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	ENST00000592414.1_1_19:3053234-3053555:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2453831420501	2	576.245383	1150.47621	0.9606	0.00055354	-9.379	-0.0054046	-8.4184	-0.004851	576.7410298125062	35.434	0.048206	35.434	35.434	35.482	0	1251	46	0.8670771	0.027626812	0.8670771	351.4578	0	11.19812						56	3	2	NaN	NaN	NaN	0.6762	1	14816	14816		1.2418	0.31598	1	4119.2			20621	7737	11899	12245	16332	16332					-0.09300570724144563
PWYVRAKKSEE	11	Unmodified	_PWYVRAKKSEE_					0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.91385959990004	3	464.91386	1391.71975	1.1845	0.00055069	-6.3073	-0.0029324	-5.1228	-0.0023817	465.2440614803165	21.392	0.048056	21.392	21.368	21.416	0	1419	28	0.76361835	0.016676903	0.76361835	463.3255	0	10.118713						33	3	2	NaN	NaN	NaN	0.77843	1	20000	20000		0.11792	0.070992	1	2737.1	+		20622	11425	11900	12246	16333	16333					0.03955831517623665
PYAGGSSF	8	Unmodified	_PYAGGSSF_					0	0	0			REV__ENST00000371720.5_1_9:139305120-139310743:+|nuORF	REV__ENST00000371720.5_1_9:139305120-139310743:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3464455142001	1	785.346446	784.339169	1.6515	0.001297	0.95515	0.00075012	2.6066	0.0020471	785.3471877676578	27.543	0.16892	27.543	27.519	27.688	0	558	55	1.2873057	0.03234136	1.2873057	262.33896	0	6.59079						172	8	2	NaN	NaN	NaN	0.80692	1	4555	4555		8.2903	1.4963	1	18415	+		20623	10393	11901	12247	16334	16334					-0.061626970161796635
PYAKELETV	9	Unmodified	_PYAKELETV_					0	0	0		chr18:63477292-63484422|492|29.92|0.95|4.98|+|ENST00000424602|SERPINB5,SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5;ENSG00000206075|ENST00000382771|SERPINB5	chr18:63477292-63484422|492|29.92|0.95|4.98|+|ENST00000424602|SERPINB5,SERPINB5	chr18:63477292-63484422|492|29.92|0.95|4.98|+|ENST00000424602|SERPINB5,SERPINB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2793146892001	2	525.279315	1048.54408	1.4133	0.00074238	6.2859	0.0033018	7.6992	0.0040442	525.7837019137587	26.432	0.072392	26.421	26.397	26.469	-0.011137	1275	55	0.85233563	0.03318268	0.8508162	345.87997	0	13.465607						86	4	2	NaN	NaN	NaN	0.2345	1	10354	10354		23.118	3.954	1	9759.5			20624	132	11902	12248	16335	16335					0.02174617003538515
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.31349185755	2	566.313492	1130.61243	1.5163	0.00085868	-1.7842	-0.0010104	-0.26793	-0.00015173	566.3123548400401	20.573	0.072268	20.573	20.549	20.622	0	1236	94	0.876284	0.05701524	0.876284	355.26355	0	23.115173						146	4	3	NaN	NaN	NaN	0.27719	1	14112	14112		28.896	9.7773	1	15022			20625	3034	11903	12249	16336	16336					0.05234906374039383
PYAKPIPAQF	10	Unmodified						0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.313492	1130.61243	0.95633	0.00054158	-4.4809	-0.0025376	-3.5246	-0.001996	566.3109348313428	20.718	0.21678	20.704	20.656	20.873	-0.014086	1173	70	0.91489893	0.042274177	0.9133795	370.91885		17.138824	0.065402	-0.0014895	0.018548	NaN	28.896	159	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15745			20626	3034	11903	12249							0.05234906374039383
PYAVPSELVL	10	Unmodified	_PYAVPSELVL_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3;ENST00000393145.5_1_16:89220228-89220612:+|nuORF	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.6033884823	1	1087.60339	1086.59611	1.752	0.0019055	1.3955	0.0015178	3.1476	0.0034233	1087.6061350138705	32.683	0.16891	32.683	32.635	32.804	0	123	94	1.5458313	0.054843545	1.5458313	313.5124	0	11.122894						390	8	4	NaN	NaN	NaN	0.26902	1	12254	12254		29.598	1.8095	1	82349			20627	5036	11904	12250	16337	16337					0.056277804172850665
PYDCNECGKA	10	Unmodified	_PYDCNECGKA_					0	0	0		nc|ENSG00000187801|Q9UJL9-2|ZFP69B;nc|ENSG00000196437|Q5MCW4-2|ZNF569;ENSG00000187801|ENST00000361584|ZFP69B;ENSG00000196437|ENST00000316950|ZNF569	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.21279153495	2	550.212792	1098.41103	1.6245	0.00089385	-10.691	-0.0058823	-9.0663	-0.0049884	550.7071706425033	27.808	0.048281	27.798	27.798	27.846	-0.009552	1260	43	0.8615505	0.025797546	0.8600311	349.41367	0	10.462555						56	3	2	NaN	NaN	NaN	0.73444	1	12432	12432		5.6942	2.909	1	3861.6			20628	5522	11905	12251	16338	16338					-0.13423893716276325
PYEADAQLA	9	Unmodified	_PYEADAQLA_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4574525266	1	977.457453	976.450176	1.8488	0.0018071	-0.41099	-0.00040173	1.4378	0.0014054	977.4574123999761	20.14	0.12041	20.126	20.102	20.222	-0.014141	297	52	1.4428991	0.030261159	1.4413797	293.0503	0	6.145996						137	6	2	NaN	NaN	NaN	0.042816	1	7627	7627		49.961	2.8255	1	13295			20629	4941	11906	12252	16339	16339					-0.038991020987623415
PYEEELLM	8	Unmodified	_PYEEELLM_					0	0	0			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.4703253988	1	1023.47033	1022.46305	2.9256	0.0029943	-7.4879	-0.0076637	-4.5623	-0.0046694	1023.4609784560774	25.588	0.048265	25.576	25.552	25.6	-0.0116	189	55	1.5068626	0.03193426	1.5053432	305.84946	0	6.48172						51	3	2	NaN	NaN	NaN	0.78264	1	9258	9258		11.548	3.2582	1	3071.2	+		20630	12450	11907	12253	16340	16340					-0.04728407030881954
PYEGGFFLF	9	Unmodified	_PYEGGFFLF_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5087598156	1	1076.50876	1075.50148	1.5921	0.0017139	0.10628	0.00011441	1.6983	0.0018283	1076.5091049951848	36.205	0.33756	36.205	36.133	36.471	0	138	88	1.5369828	0.05133784	1.5369828	311.75815	0	10.413269						698	15	4	NaN	NaN	NaN	0.002833	1	11777	11777		108.51	58.477	1	163870			20631	4016	11908	12254	16341	16341					-0.03324733334056873
PYEGGFFLF	9	Unmodified	_PYEGGFFLF_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5087598156	1	1076.50876	1075.50148	2.0397	0.0021957	0.097386	0.00010484	2.137	0.0023005	1076.508819787352	36.204	0.26501	36.205	36.157	36.422	0.0011024	138	82	1.5369828	0.04778719	1.5354633	311.75815	0	9.693054						617	12	4	NaN	NaN	NaN	0.012648	1	11468	11468		84.879	45.961	1	157740			20632	4016	11908	12254	16342	16342					-0.03324733334056873
PYEWMYGW	8	Unmodified	_PYEWMYGW_					0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.23385294055	2	566.233853	1130.45315	2.05	0.0011608	-11.785	-0.0066733	-9.7355	-0.0055126	566.2269967450553	30.004	0.096569	30.004	29.98	30.077	0	1245	40	0.87076044	0.023945808	0.87076044	353.02484	0	9.70813						88	5	3	NaN	NaN	NaN	0.80071	1	14090	14090		9.1232	1.5828	1	9112.2	+		20633	9186	11909	12255	16343	16343					-0.10685550245602826
PYEWMYGW	8	Unmodified						0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.233853	1130.45315	2.05	0.0011608	-11.785	-0.0066733	-9.7355	-0.0055126	566.2269967450553	30.004	0.096569	30.004	29.98	30.077	0	1245	40	0.87076044	0.023945808	0.87076044	353.02484		9.70813	0.0036629	0.00020485	0.00075972	NaN	9.1232	88	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9112.2	+		20634	9186	11909	12255							-0.10685550245602826
PYEWMYGW	8	Unmodified						0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.233853	1130.45315	1.0044	0.00056871	-12.118	-0.0068616	-11.114	-0.0062929	566.2265955148135	30.004	0.16892	29.997	29.949	30.118	-0.0064106	1245	55	0.87076044	0.033161104	0.869241	353.02484		13.444214	-0.0036629	-0.00017167	-0.00075972	NaN	9.1232	127	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11229	+		20635	9186	11909	12255							-0.10685550245602826
PYEYEQCST	9	Unmodified	_PYEYEQCST_					0	0	0		nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2185968068501	2	560.218597	1118.42264	1.0863	0.00060858	0.93633	0.00052455	2.0227	0.0011331	560.720026979122	29.304	0.21714	29.296	29.224	29.441	-0.0077229	1230	82	0.8799654	0.04973364	0.878446	356.8029	0	20.16568						385	10	3	NaN	NaN	NaN	0.61413	1	13196	13196		4.9097	0.49665	1	25300			20636	5673	11910	12256	16344	16344					-0.13183373421293254
PYFEALKQ	8	Unmodified	_PYFEALKQ_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.5196588529	1	995.519659	994.512382	1.0748	0.00107	3.3738	0.0033587	4.4486	0.0044286	995.5230156999007	33.744	0.096554	33.742	33.718	33.814	-0.0018463	159	55	1.5245869	0.031890154	1.5230675	309.56265	0	6.475189						120	5	3	NaN	NaN	NaN	0.76633	1	8208	8208		13.737	0	1	9009.2			20637	4042	11911	12257	16345	16345					0.014906690402199274
PYFLDCHRYFT	11	Unmodified	_PYFLDCHRYFT_					0	0	0		ENST00000514302.5_1_4:8602857-8612970:+|nuORF;nc|ENSG00000109625|Q66K79-3|CPZ;nc|ENSG00000109625|Q66K79-2|CPZ;ENSG00000109625|ENST00000360986|CPZ	ENST00000514302.5_1_4:8602857-8612970:+|nuORF	ENST00000514302.5_1_4:8602857-8612970:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.33462961765	2	731.33463	1460.65471	1.1553	0.00084489	-4.6851	-0.0034263	-3.5298	-0.0025815	731.3314228099617	32.442	0.16889	32.442	32.418	32.587	0	1014	58	1.0119673	0.034711897	1.0119673	409.15366	0	14.034576						289	8	4	NaN	NaN	NaN	0.6085	1	20430	20430		13.463	1.7242	1	31247			20638	1727	11912	12258	16346	16346					-0.057194862799178736
PYFLDCHRYFT	11	Unmodified	_PYFLDCHRYFT_					0	0	0		ENST00000514302.5_1_4:8602857-8612970:+|nuORF;nc|ENSG00000109625|Q66K79-3|CPZ;nc|ENSG00000109625|Q66K79-2|CPZ;ENSG00000109625|ENST00000360986|CPZ	ENST00000514302.5_1_4:8602857-8612970:+|nuORF	ENST00000514302.5_1_4:8602857-8612970:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.33462961765	2	731.33463	1460.65471	0.9279	0.0006786	-4.6464	-0.0033981	-3.7185	-0.0027195	731.331056576834	32.441	0.16893	32.438	32.414	32.583	-0.0031052	1014	55	1.0119673	0.03287965	1.0104479	409.15366	0	13.293732						239	8	3	NaN	NaN	NaN	0.37016	1	19445	19445		23.118	9.6545	1	29878			20639	1727	11912	12258	16347	16347					-0.057194862799178736
PYFLPTQDL	9	Unmodified	_PYFLPTQDL_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.28185737815	2	547.281857	1092.54916	1.8979	0.0010387	1.7306	0.00094712	3.6285	0.0019858	547.2841855729112	17.402	0.16799	17.388	17.316	17.484	-0.013569	1209	133	0.892844	0.08100808	0.8913246	362.12918	0	32.85611						563	8	5	NaN	NaN	NaN	0.12328	1	12190	12190		32.453	0.77731	1	113470	+		20640	9929	11913	12259	16348	16348					0.006589208661353041
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.27911772395	2	542.279118	1082.54368	1.9114	0.0010365	-1.6834	-0.00091285	0.22803	0.00012366	542.2783607711533	30.342	0.31372	30.342	30.294	30.608	0	1269	112	0.8560222	0.06813145	0.8560222	347.2346	0	27.636658						751	14	5	NaN	NaN	NaN	0.0088919	1	12095	12095		94.648	58.611	1	277920			20641	7317	11914	12260	16349	16349					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5509589812998	1	1083.55096	1082.54368	1.7423	0.0018879	0.68487	0.00074209	2.4272	0.0026299	1083.551500628685	30.342	0.12067	30.342	30.294	30.415	0	102	139	1.5582114	0.08134198	1.5582114	316.03806	0	16.497864						567	6	4	NaN	NaN	NaN	0.0055068	1	12098	12098		101.55	72.888	1	111020			20642	7317	11914	12260	16350	16350					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.27911772395	2	542.279118	1082.54368	1.4699	0.00079709	-0.89156	-0.00048347	0.57834	0.00031362	542.2786196774446	30.341	0.2413	30.335	30.287	30.528	-0.0064106	1269	115	0.8560222	0.06996906	0.85450274	347.23456	0	28.38205						804	11	5	NaN	NaN	NaN	0.011687	1	11783	11783		87.795	51.758	1	298440			20643	7317	11914	12260	16351	16351					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		ENST00000503671.2_1_4:110737056-110740318:+|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	ENST00000503671.2_1_4:110737056-110740318:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5509589812998	1	1083.55096	1082.54368	1.3131	0.0014228	1.3368	0.0014484	2.6498	0.0028712	1083.5515660896456	30.341	0.16889	30.335	30.287	30.456	-0.0064106	99	139	1.5599792	0.08134198	1.5584598	316.3966	0	16.497864						535	8	3	NaN	NaN	NaN	0.020004	1	11784	11784		71.993	45.261	1	109530			20644	7317	11914	12260	16352	16352					0.0057124207430661045
PYFPIPEEYTF	11	Unmodified	_PYFPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.8319113657	2	701.831911	1401.64927	0.54538	0.00038276	-3.3797	-0.002372	-2.8343	-0.0019892	701.829455878924	33.383	0.16894	33.383	33.335	33.504	0	1071	94	0.977233	0.05674517	0.977233	395.26605	0	22.951996						429	8	5	NaN	NaN	NaN	3.2244E-11	1	20072	20072		106.56	86.109	1	67278			20645	3800	11915	12261	16353	16353					-0.035488865907382205
PYFPIPEEYTF	11	Unmodified	_PYFPIPEEYTF_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.8319113657	2	701.831911	1401.64927	0.41198	0.00028914	-3.1379	-0.0022023	-2.7259	-0.0019131	701.8300431016502	33.382	0.14479	33.38	33.332	33.476	-0.0018501	1068	97	0.97906286	0.05857253	0.9775434	396.0062	0	23.691101						403	7	5	NaN	NaN	NaN	1.8451E-15	1	19130	19130		118.2	84.779	1	67328			20646	3800	11915	12261	16354	16354					-0.035488865907382205
PYFSASVLI	9	Unmodified	_PYFSASVLI_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5400599440001	1	996.54006	995.532783	1.2875	0.001283	2.7311	0.0027216	4.0186	0.0040046	996.5437373156947	29.907	0.048265	29.9	29.876	29.924	-0.0070667	156	118	1.5263584	0.069143176	1.5248389	309.918	0	14.039093						235	3	4	NaN	NaN	NaN	0.03623	1	8251	8251		52.758	2.7257	1	36216	+		20647	10357	11916	12262	16355	16355					0.03483839700038516
PYFSASVLI	9	Unmodified						0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.54006	995.532783	1.2875	0.001283	2.7311	0.0027216	4.0186	0.0040046	996.5437373156947	29.907	0.048265	29.9	29.876	29.924	-0.0070667	156	118	1.5263584	0.069143176	1.5248389	309.918		14.039093	-0.016046	-0.00013215	-0.00075972	NaN	52.758	235	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36216	+		20648	10357	11916	12262							0.03483839700038516
PYFSGSSTF	9	Unmodified	_PYFSGSSTF_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4359888030001	1	992.435989	991.428712	2.0887	0.0020729	-0.32673	-0.00032426	1.762	0.0017487	992.4346988292524	23.778	0.072275	23.778	23.754	23.827	0	261	52	1.4642475	0.030222535	1.4642475	297.32358	0	6.1368713						95	4	2	NaN	NaN	NaN	0.032764	1	8252	8252		55.494	34.938	1	8821.7			20649	3197	11917	12263	16356	16356					-0.06734487127471311
PYFSGSSTF	9	Unmodified	_PYFSGSSTF_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4359888030001	1	992.435989	991.428712	2.0035	0.0019883	0.37233	0.00036951	2.3758	0.0023578	992.4355273841528	23.778	0.09639	23.765	23.741	23.837	-0.013048	261	58	1.4642475	0.03377819	1.462728	297.32358	0	6.858856						115	5	2	NaN	NaN	NaN	0.023828	1	8085	8085		67.154	34.702	1	9588.2			20650	3197	11917	12263	16357	16357					-0.06734487127471311
PYFSPSASF	9	Unmodified	_PYFSPSASF_					0	0	0		nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.73200035585	2	501.732	1001.44945	1.5935	0.0007995	-3.064	-0.0015373	-1.4705	-0.0007378	501.73026758599434	24.261	0.072357	24.261	24.237	24.309	0	1311	115	0.83019954	0.07014328	0.83019954	337.1024	0	28.48169						348	4	5	NaN	NaN	NaN	0.03623	1	8637	8637		52.758	0	1	136540			20651	4925	11918	12264	16358	16358					-0.05121896747800747
PYFSPSASF	9	Unmodified						0	0	0		nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.732	1001.44945	1.4435	0.00072426	-2.184	-0.0010958	-0.74051	-0.00037154	501.73070290361477	24.26	0.09655	24.248	24.224	24.32	-0.012749	1314	115	0.8283535	0.07015091	0.8268341	336.3528		28.484772	-0.0065195	0.00038025	-0.0016827	NaN	52.758	301	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131570			20652	4925	11918	12264							-0.05121896747800747
PYFYAPELL	9	Unmodified	_PYFYAPELL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;CON__P02769	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.5662746945	1	1112.56627	1111.559	1.4591	0.0016234	0.98753	0.0010987	2.4467	0.0027221	1112.5665702352676	32.852	0.0965	32.852	32.804	32.9	0	87	73	1.5670487	0.04238987	1.5670487	317.72598	0	8.594727						182	5	3	NaN	NaN	NaN	0.60063	1	13343	13343		5.4659	1.8926	1	13847		+	20653	192	11919	12265	16359	16359					0.007681088715116857
PYFYAPELL	9	Unmodified						0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;CON__P02769	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1112.56627	1111.559	0.95006	0.001057	1.9043	0.0021187	2.8544	0.0031757	1112.5687316752503	32.851	0.12066	32.848	32.8	32.92	-0.0031052	78	67	1.5723488	0.03885734	1.5708294	318.8006		7.8785095	-0.0020733	0.00061825	0.0018903	NaN	5.4659	150	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12447		+	20654	192	11919	12265							0.007681088715116857
PYFYYQPER	9	Unmodified	_PYFYYQPER_					0	0	0			REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	REV__tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.79566324515	2	631.795663	1261.57677	1.6283	0.0010287	7.9638	0.0050315	9.5921	0.0060603	631.7983746032735	36.374	0.072258	36.374	36.302	36.374	0	1152	22	0.92775106	0.01284802	0.92775106	375.65857	0	5.2023315						35	4	2	NaN	NaN	NaN	0.39244	1	18030	18030		14.042	5.0796	1	2750.9	+		20655	13453	11920	12266	16360	16360					-0.04355175873638473
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2827230454001	2	524.282723	1046.55089	1.8159	0.00095203	-3.6904	-0.0019348	-1.8745	-0.00098277	524.2804792594843	17.669	0.21573	17.669	17.597	17.813	0	1260	97	0.8615505	0.058978617	0.8615505	349.62808	0	23.934296						302	10	5	NaN	NaN	NaN	0.21451	1	10491	10491		24.4	9.9752	1	41532			20656	3443	11921	12267	16361	16361					0.02947974674748366
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2827230454001	2	524.282723	1046.55089	1.7147	0.00089901	-0.68705	-0.00036021	1.0277	0.00053881	524.2820190718052	17.714	0.23974	17.7	17.652	17.892	-0.013784	1260	52	0.8615505	0.031327307	0.8600311	349.62805	0	12.713013						248	11	3	NaN	NaN	NaN	0.03533	1	10287	10287		53.14	23.542	1	39455			20657	3443	11921	12267	16362	16362					0.02947974674748366
PYHAYYRH	8	Unmodified	_PYHAYYRH_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7619578135501	2	553.761958	1105.50936	1.1085	0.00061384	0.53286	0.00029508	1.6414	0.00090892	554.2633340536753	15.029	0.16817	15.029	14.933	15.101	0	1233	37	0.87812483	0.022090733	0.87812483	356.1072	0	8.958466						130	8	3	NaN	NaN	NaN	0.79379	1	13074	13074		10.052	1.0896	1	9924.2			20658	1179	11922	12268	16363	16363					-0.039171612939071565
PYHELTLF	8	Unmodified	_PYHELTLF_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5196588529002	1	1019.51966	1018.51238	2.7422	0.0027958	0.83448	0.00085077	3.5767	0.0036465	1019.5215940205271	30.029	0.12072	30.029	29.98	30.101	0	240	106	1.4766881	0.06213057	1.4766881	299.74036	0	12.611359						159	6	2	NaN	NaN	NaN	0.76633	1	9318	9318		13.737	1.6884	1	20149	+		20659	9661	11923	12269	16364	16364					0.003866690402446693
PYHELTLF	8	Unmodified						0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1019.51966	1018.51238	2.7422	0.0027958	0.83448	0.00085077	3.5767	0.0036465	1019.5215940205271	30.029	0.12072	30.029	29.98	30.101	0	240	106	1.4766881	0.06213057	1.4766881	299.74036		12.611359	0	0	0	NaN	13.737	159	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20149	+		20660	9661	11923	12269							0.003866690402446693
PYHIGSSVEF	10	Unmodified	_PYHIGSSVEF_					0	0	0		nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	nc|ENSG00000021826|P31327-2|CPS1	nc|ENSG00000021826|P31327-2|CPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2745636623001	2	568.274564	1134.53457	1.9048	0.0010825	-7.097	-0.004033	-5.1922	-0.0029506	568.773084419809	21.97	0.048153	21.97	21.946	21.994	0	1233	43	0.87812483	0.025772452	0.87812483	355.99506	0	10.448273						51	3	2	NaN	NaN	NaN	0.72631	1	14250	14250		6.2502	0	1	8336.2			20661	461	11924	12270	16365	16365					-0.027311512819778727
PYIDPEKSD	9	Unmodified	_PYIDPEKSD_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.250754215	2	532.250754	1062.48696	2.3452	0.0012482	5.5281	0.0029423	7.8733	0.0041906	532.2534260830216	18.245	0.11986	18.245	18.173	18.292	0	1287	46	0.8449601	0.027668655	0.8449601	342.82864	0	11.226105						85	6	2	NaN	NaN	NaN	0.53317	1	11214	11214		8.2448	0.65458	1	7169.5			20662	2132	11925	12271	16366	16366					-0.0417885027286502
PYIFEQREYKA	11	Unmodified	_PYIFEQREYKA_					0	0	0			REV__nc|ENSG00000105963|O75689-3|ADAP1	REV__nc|ENSG00000105963|O75689-3|ADAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3669839910501	2	722.366984	1442.71942	1.8435	0.0013317	-11.081	-0.0080044	-9.2373	-0.0066727	722.3583174805434	25.829	0.16891	25.829	25.781	25.95	0	1014	100	1.0119673	0.060328126	1.0119673	409.2014	0	24.39444						412	8	4	NaN	NaN	NaN	0.11611	1	20339	20339		38.131	5.6781	1	40567	+		20663	8977	11926	12272	16367	16367					0.01576411797759647
PYIFEQREYKA	11	Unmodified						0	0	0			REV__nc|ENSG00000105963|O75689-3|ADAP1	REV__nc|ENSG00000105963|O75689-3|ADAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	722.366984	1442.71942	1.8435	0.0013317	-11.081	-0.0080044	-9.2373	-0.0066727	722.3583174805434	25.829	0.16891	25.829	25.781	25.95	0	1014	100	1.0119673	0.060328126	1.0119673	409.2014		24.39444	0.0059245	-0.0010461	-0.00015336	NaN	38.131	412	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40567	+		20664	8977	11926	12272							0.01576411797759647
PYIGVREGRGG	11	Unmodified	_PYIGVREGRGG_					0	0	0			REV__ENST00000473429.5_1_1:110597341-110615101:+|nuORF	REV__ENST00000473429.5_1_1:110597341-110615101:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.54387813993327	3	387.543878	1159.60981	1.3188	0.0005111	-0.53768	-0.00020837	0.78115	0.00030273	387.5439430684875	13.18	0.072104	13.18	13.156	13.228	0	1494	37	0.7172283	0.022297442	0.7172283	436.03278	0	13.555542						74	4	2	NaN	NaN	NaN	0.17366	1	15135	15135		20.255	0	1	6116.4	+		20665	12338	11927	12273	16368	16368					0.03638450969060614
PYIIHTVLY	9	Unmodified	_PYIIHTVLY_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.8158673710001	2	559.815867	1117.61718	1.8114	0.0010141	-2.4323	-0.0013617	-0.6209	-0.00034759	559.8151279862625	25.226	0.096544	25.226	25.202	25.298	0	1197	55	0.9001988	0.03308952	0.9001988	365.01022	0	13.417053						170	5	3	NaN	NaN	NaN	0.013314	1	13590	13590		82.858	32.826	1	42863			20666	2533	11928	12274	16369	16369					0.06307790516802925
PYIIHTVLY	9	Unmodified	_PYIIHTVLY_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.8158673710001	2	559.815867	1117.61718	1.6931	0.0009478	-2.2704	-0.001271	-0.57738	-0.00032323	559.814826497432	25.25	0.12058	25.238	25.214	25.334	-0.012011	1197	64	0.9001988	0.038606524	0.8986794	365.01022	0	15.654083						140	6	2	NaN	NaN	NaN	0.020004	1	13190	13190		71.993	30.533	1	39034			20667	2533	11928	12274	16370	16370					0.06307790516802925
PYILEAALI	9	Unmodified	_PYILEAALI_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5870101366	1	1002.58701	1001.57973	1.032	0.0010346	0.33464	0.00033551	1.3666	0.0013701	1002.5873788504429	33.504	0.096516	33.504	33.456	33.552	0	129	64	1.5422925	0.03717172	1.5422925	313.1275	0	7.5469055						108	5	2	NaN	NaN	NaN	0.12945	1	8669	8669		31.561	11.006	1	11524			20668	1378	11929	12275	16371	16371					0.07900699251183596
PYILSDKLV	9	Unmodified	_PYILSDKLV_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;ENST00000495190.1_1_3:184612509-184618801:+|nuORF	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.3078751634	2	524.307875	1046.6012	0.86099	0.00045142	-0.42919	-0.00022503	0.4318	0.0002264	524.3071822916631	30.825	0.16888	30.825	30.777	30.946	0	1224	85	0.883646	0.05151713	0.883646	358.59445	0	20.90628						207	8	3	NaN	NaN	NaN	0.39983	1	10501	10501		13.737	1.1492	1	33161			20669	3935	11930	12276	16372	16372					0.07976084279880524
PYILSDKLV	9	Unmodified						0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF;ENST00000495190.1_1_3:184612509-184618801:+|nuORF	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	524.307875	1046.6012	1.0478	0.00054939	-0.47334	-0.00024817	0.5745	0.00030122	524.3077084688109	30.824	0.14483	30.818	30.77	30.915	-0.0057564	1221	61	0.885486	0.03680587	0.88396657	359.34116		14.936279	-0.0034358	-1.7404E-05	0.00016028	NaN	13.737	235	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43005			20670	3935	11930	12276							0.07976084279880524
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.3078751634	2	548.307875	1094.6012	1.197	0.0006563	-1.8379	-0.0010077	-0.64095	-0.00035144	548.3067309452335	32.37	0.19305	32.37	32.321	32.514	0	1188	70	0.90571284	0.042283356	0.90571284	367.3401	0	17.149353						369	9	4	NaN	NaN	NaN	0.023074	1	12619	12619		68.108	28.65	1	74597			20671	946	11931	12277	16373	16373					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.6084738601999	1	1095.60847	1094.6012	1.5807	0.0017318	-0.52013	-0.00056986	1.0605	0.0011619	1095.6082287364325	32.37	0.072411	32.37	32.321	32.394	0	60	82	1.582944	0.0476861	1.582944	321.00986	0	9.67041						154	4	3	NaN	NaN	NaN	0.00017726	1	12620	12620		118.2	56.933	1	18019			20672	946	11931	12277	16374	16374					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.3078751634	2	548.307875	1094.6012	0.95137	0.00052164	-1.2456	-0.00068297	-0.29423	-0.00016133	548.3070377096014	32.344	0.14479	32.341	32.316	32.461	-0.0037613	1185	70	0.90755045	0.042278767	0.906031	368.0854	0	17.14746						330	7	4	NaN	NaN	NaN	0.023074	1	12291	12291		68.108	26.324	1	75980			20673	946	11931	12277	16375	16375					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.6084738601999	1	1095.60847	1094.6012	1.1182	0.0012251	1.2649	0.0013858	2.3831	0.0026109	1095.6092874148173	32.344	0.096519	32.341	32.316	32.413	-0.0037613	60	82	1.582944	0.047681093	1.5814246	321.00983	0	9.669373						169	5	3	NaN	NaN	NaN	0.028349	1	12292	12292		61.271	28.818	1	17007			20674	946	11931	12277	16376	16376					0.05768084279884533
PYITVRVKD	9	Unmodified	_PYITVRVKD_					0	0	0		ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.21335794703333	3	364.213358	1089.61824	2.381	0.00086718	-10.458	-0.0038089	-8.0768	-0.0029417	364.20981635115504	17.834	0.071941	17.82	17.796	17.868	-0.013786	1455	37	0.7413668	0.02226597	0.73984736	451.04715	0	13.546631						55	4	2	NaN	NaN	NaN	0.25424	1	12081	12081		21.85	3.2923	1	6247.7			20675	7372	11932	12278	16377	16377					0.07702004885709357
PYKWDYWPHED	11	Unmodified	_PYKWDYWPHED_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000492882.1_1_2:61492513-61493137:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3331411737	2	768.333141	1534.65173	1.7972	0.0013808	-4.4745	-0.0034379	-2.6773	-0.0020571	768.8315560473759	28.412	0.096539	28.412	28.388	28.484	0	996	49	1.0229213	0.02920115	1.0229213	413.39532	0	11.801147						93	5	3	NaN	NaN	NaN	0.7072	1	20673	20673		6.9844	2.6742	1	5277.5			20676	2024	11933	12279	16378	16378					-0.0942103813306403
PYKWDYWPHED	11	Unmodified	_PYKWDYWPHED_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000492882.1_1_2:61492513-61493137:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3331411737	2	768.333141	1534.65173	1.8412	0.0014146	-4.3598	-0.0033498	-2.5187	-0.0019352	768.8311345395261	28.267	0.1689	28.267	28.194	28.363	0	996	58	1.0229213	0.034682035	1.0229213	413.39532	0	14.016113						203	8	2	NaN	NaN	NaN	0.71564	1	20674	20674		6.4299	3.8305	1	26287			20677	2024	11933	12279	16379	16379					-0.0942103813306403
PYKWDYWPHED	11	Unmodified	_PYKWDYWPHED_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000492882.1_1_2:61492513-61493137:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.3331411737	2	768.333141	1534.65173	1.2843	0.00098676	-3.3902	-0.0026048	-2.1059	-0.001618	768.8312271272875	28.121	0.19309	28.112	28.016	28.209	-0.0089779	993	64	1.0247463	0.038336873	1.0232269	414.13287	0	15.493164						249	9	3	NaN	NaN	NaN	0.74794	1	19649	19649		4.3102	0.38204	1	22220			20678	2024	11933	12279	16380	16380					-0.0942103813306403
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8027599957501	2	561.80276	1121.59097	2.016	0.0011326	-0.54732	-0.00030748	1.4687	0.00082512	561.8025075642066	29.208	0.16896	29.208	29.16	29.329	0	1185	112	0.90755045	0.06803584	0.90755045	367.97525	0	27.585785						642	8	3	NaN	NaN	NaN	0.0031782	1	13756	13756		107.47	66.009	1	516040			20679	5655	11934	12280	16381	16381					0.035035213453284086
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8027599957501	2	561.80276	1121.59097	1.741	0.00097808	-1.1906	-0.00066886	0.55041	0.00030922	561.8019584315178	29.231	0.24132	29.224	29.175	29.417	-0.0077209	1182	112	0.9093879	0.06802839	0.90786844	368.72025	0	27.582794						747	11	3	NaN	NaN	NaN	0.011118	1	13346	13346		89.521	48.061	1	527400			20680	5655	11934	12280	16382	16382					0.035035213453284086
PYLGGVGS	8	Unmodified	_PYLGGVGS_					0	0	0		nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3828310205001	1	749.382831	748.375555	1.6133	0.001209	-9.7627	-0.007316	-8.1494	-0.006107	749.3753920666376	24.429	0.16891	24.417	24.393	24.561	-0.012749	567	124	1.2819146	0.07373321	1.2803952	261.45618	0	15.038452						317	8	2	NaN	NaN	NaN	0.81214	1	3946	3946		7.5902	5.9199	1	78165			20681	4429	11935	12281	16383	16383					-0.008698201194647481
PYLGGVGS	8	Unmodified						0	0	0		nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.382831	748.375555	1.3862	0.0010388	-11.036	-0.0082704	-9.6501	-0.0072316	749.3749028229046	24.406	0.2653	24.406	24.381	24.647	0	567	124	1.2819146	0.07372534	1.2819146	261.45618		15.036835	-0.0055787	-0.00055935	0.00075972	NaN	7.5902	449	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86936			20682	4429	11935	12281							-0.008698201194647481
PYLGQAPFL	9	Unmodified	_PYLGQAPFL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.2738353808	2	503.273835	1004.53312	1.8372	0.00092462	-1.8292	-0.00092058	0.0080307	4.0416E-06	503.2730635388737	30.125	0.1207	30.125	30.077	30.198	0	1275	64	0.85233563	0.038723588	0.85233563	346.07635	0	15.723022						165	6	2	NaN	NaN	NaN	0.049033	1	8769	8769		47.321	24.236	1	14431			20683	8057	11936	12282	16384	16384					0.031032594199018604
PYLGQAPFL	9	Unmodified	_PYLGQAPFL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG;SYNRG|p.M1216Ifs*10|1|0.13|ENSG00000275066|chr17:37535997-37535998|-/A|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	nc|ENSG00000275066|Q9UMZ2-9|SYNRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.2738353808	2	503.273835	1004.53312	0.90198	0.00045394	-1.0379	-0.00052235	-0.13592	-6.8405E-05	503.27277845385424	30.124	0.12064	30.118	30.07	30.19	-0.0064106	1272	70	0.854179	0.042420685	0.8526596	346.82483	0	17.224213						170	6	3	NaN	NaN	NaN	0.24994	1	8597	8597		22.126	4.3274	1	14357			20684	8057	11936	12282	16385	16385					0.031032594199018604
PYLLDLHLF	9	Unmodified	_PYLLDLHLF_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8158673710001	2	565.815867	1129.61718	1.1183	0.00063273	-3.893	-0.0022027	-2.7747	-0.00157	565.813636172826	33.721	0.16892	33.721	33.673	33.842	0	1113	52	0.9515937	0.031158626	0.9515937	385.79974	0	12.632477						231	8	3	NaN	NaN	NaN	0.043119	1	14076	14076		49.833	21.338	1	39563			20685	2353	11937	12283	16386	16386					0.05755790516809611
PYLLDLHLF	9	Unmodified	_PYLLDLHLF_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.8158673710001	2	565.815867	1129.61718	0.62306	0.00035254	-1.898	-0.0010739	-1.2749	-0.00072137	565.8146595386892	33.744	0.16899	33.742	33.694	33.863	-0.0018463	1110	55	0.95342636	0.03298968	0.9519069	386.54276	0	13.374847						231	8	3	NaN	NaN	NaN	0.023074	1	13626	13626		68.108	36.547	1	38734			20686	2353	11937	12283	16387	16387					0.05755790516809611
PYLLISTQI	9	Unmodified	_PYLLISTQI_					0	0	0		nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.6084738602	1	1047.60847	1046.6012	1.6753	0.0017551	0.10559	0.00011062	1.7809	0.0018657	1047.6087353735138	30.824	0.21723	30.818	30.77	30.987	-0.0057564	78	136	1.5723488	0.07956946	1.5708294	319.04327	0	16.145355						706	10	5	NaN	NaN	NaN	0.006197	1	10294	10294		100.15	2.1048	1	233950			20687	3116	11938	12284	16388	16388					0.07976084279903262
PYLLISTQI	9	Unmodified						0	0	0		nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1047.60847	1046.6012	1.8265	0.0019135	0.45072	0.00047217	2.2772	0.0023857	1047.6088187844748	30.825	0.24132	30.825	30.777	31.018	0	81	142	1.5705823	0.08311474	1.5705823	318.6848		16.864716	0.0034358	9.9122E-05	-0.00012354	NaN	100.15	744	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261050			20688	3116	11938	12284							0.07976084279903262
PYLSEVLTF	9	Unmodified	_PYLSEVLTF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5611893166	1	1068.56119	1067.55391	1.388	0.0014832	0.1474	0.0001575	1.5354	0.0016407	1068.5606023957002	32.9	0.09655	32.9	32.876	32.973	0	63	85	1.5811787	0.049460053	1.5811787	320.753	0	10.033325						269	5	4	NaN	NaN	NaN	0.032417	1	11451	11451		55.947	30.986	1	30974			20689	5630	11939	12285	16389	16389					0.02283805008892159
PYLSEVLTF	9	Unmodified	_PYLSEVLTF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5611893166	1	1068.56119	1067.55391	0.82756	0.0008843	-2.3887	-0.0025525	-1.5611	-0.0016682	1068.5574265503053	32.899	0.16888	32.897	32.8	32.969	-0.0024757	60	94	1.582944	0.054768085	1.5814246	321.1111	0	11.110107						244	8	2	NaN	NaN	NaN	0.0081087	1	11179	11179		96.245	49.11	1	30741			20690	5630	11939	12285	16390	16390					0.02283805008892159
PYLVLLHTL	9	Unmodified	_PYLVLLHTL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A;LRRC8A|p.Y124C|1|0.22|ENSG00000136802|chr9:128907535-128907535|A/G|missense_variant;ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.8262350920501	2	534.826235	1067.63792	2.0105	0.0010753	-2.0908	-0.0011182	-0.080294	-4.2943E-05	534.8249598612489	28.291	0.096493	28.291	28.267	28.363	0	1209	43	0.892844	0.025747418	0.892844	362.2344	0	10.445953						109	5	3	NaN	NaN	NaN	0.02781	1	11465	11465		61.977	0	1	16304			20691	3041	11940	12286	16391	16391					0.10680380896474162
PYLVLLHTL	9	Unmodified						0	0	0		ENSG00000136802|ENST00000372600|LRRC8A;LRRC8A|p.Y124C|1|0.22|ENSG00000136802|chr9:128907535-128907535|A/G|missense_variant;ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.826235	1067.63792	0.83164	0.00044478	-1.0182	-0.00054456	-0.18657	-9.9782E-05	534.8251845771804	28.339	0.096508	28.33	28.281	28.378	-0.0089779	1206	37	0.894683	0.022066832	0.89316356	362.9805		8.952728	0.019281	0.0007052	0.00015978	NaN	61.977	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11070			20692	3041	11940	12286							0.10680380896474162
PYLVRFSVSVV	11	Unmodified	_PYLVRFSVSVV_					0	0	0			REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.36625570955	2	633.366256	1264.71796	1.2362	0.00078297	2.6432	0.0016741	3.8794	0.0024571	633.3678622419033	32.852	0.2655	32.852	32.828	33.094	0	1041	82	0.9955231	0.049343407	0.9955231	403.08954	0	19.979279						305	12	2	NaN	NaN	NaN	0.77743	1	18111	18111		0.69115	0.17511	1	38761	+		20693	10260	11941	12287	16392	16392					0.0961882249964674
PYLVRFSVSVV	11	Unmodified						0	0	0			REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	633.366256	1264.71796	1.2362	0.00078297	2.6432	0.0016741	3.8794	0.0024571	633.3678622419033	32.852	0.2655	32.852	32.828	33.094	0	1041	82	0.9955231	0.049343407	0.9955231	403.08954		19.979279	0.0020733	-6.2137E-05	0.00075972	NaN	0.69115	305	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38761	+		20694	10260	11941	12287							0.0961882249964674
PYLVRFSVSVV	11	Unmodified						0	0	0			REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	REV__ENST00000494378.1_1_1:235643345-235647829:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.366256	1264.71796	1.122	0.00071063	2.7278	0.0017277	3.8498	0.0024383	633.3677340083339	32.851	0.24117	32.848	32.8	33.041	-0.0031052	1041	85	0.9955231	0.051168263	0.99400365	403.08954		20.71814	-0.0020733	4.4972E-05	-0.00075972	NaN	0.69115	454	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43490	+		20695	10260	11941	12287							0.0961882249964674
PYLWWKKYI	9	Unmodified	_PYLWWKKYI_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.90949830596674	3	432.909498	1295.70667	1.6957	0.0007341	-4.034	-0.0017464	-2.3383	-0.0010123	432.9081807809745	26.046	0.1207	26.046	25.998	26.119	0	1401	31	0.77473325	0.018518806	0.77473325	470.41144	0	11.244476						105	6	3	NaN	NaN	NaN	0.055351	1	18705	18705		44.638	20.245	1	9890.5			20696	418	11942	12288	16393	16393					0.07064045196193547
PYMAKFVVF	9	Unmodified	_PYMAKFVVF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.29371354315	2	551.293714	1100.57287	1.6416	0.00090501	-1.5482	-0.00085351	0.093414	5.1499E-05	551.2932497362511	27.857	0.21717	27.857	27.784	28.001	0	1251	85	0.8670771	0.05153942	0.8670771	351.64645	0	20.901978						504	10	5	NaN	NaN	NaN	0.10956	1	12872	12872		34.439	16.658	1	164160			20697	3725;28	11943	12289	16394	16394					0.026610630989580386
PYMAKFVVF	9	Unmodified	_PYMAKFVVF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.29371354315	2	551.293714	1100.57287	1.325	0.00073044	-1.2832	-0.00070741	0.04178	2.3033E-05	551.2932045900794	27.88	0.19312	27.87	27.822	28.015	-0.009552	1248	88	0.8689189	0.05337143	0.86739945	352.39337	0	21.644989						547	9	5	NaN	NaN	NaN	0.062072	1	12536	12536		41.785	16.823	1	171310			20698	3725;28	11943	12289	16395	16395					0.026610630989580386
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(50)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2911708542	2	559.291171	1116.56779	2.2404	0.001253	-1.9779	-0.0011062	0.26242	0.00014677	559.2906685173597	25.539	0.21711	25.539	25.443	25.66	0	1233	79	0.87812483	0.04784769	0.87812483	356.0638	0	19.401367						440	10	5	NaN	NaN	NaN	0.043119	1	13538	13538		49.833	22.044	1	185310			20699	3725;28	11943	12290	16396	16396		0			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(42)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000145362|Q01484-2|ANK2	nc|ENSG00000145362|Q01484-2|ANK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2911708542	2	559.291171	1116.56779	2.2495	0.0012581	-1.8253	-0.0010209	0.42418	0.00023724	559.2906141197093	25.563	0.28951	25.552	25.407	25.696	-0.011602	1233	91	0.87812483	0.05520886	0.8766054	356.0638	0	22.38617						639	13	6	NaN	NaN	NaN	0.062072	1	13143	13143		41.785	21.229	1	212790			20700	3725;28	11943	12290	16397	16397		0			0.014167592363264703
PYMANVYLI	9	Unmodified	_PYMANVYLI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.28080313315	2	542.280803	1082.54705	0.96029	0.00052075	-1.8244	-0.00098933	-0.8641	-0.00046858	542.2796067601676	30.946	0.096546	30.946	30.922	31.018	0	1185	103	0.90755045	0.062502444	0.90755045	368.13635	0	25.353333						250	5	3	NaN	NaN	NaN	0.056273	1	12097	12097		44.247	29.071	1	31098			20701	3795	11944	12291	16398	16398					0.009081688566766388
PYMANVYLI	9	Unmodified	_PYMANVYLI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5543297996999	1	1083.55433	1082.54705	0.94128	0.0010199	-0.94103	-0.0010197	0.00024998	2.7087E-07	1083.5503745804458	30.946	0.096546	30.946	30.922	31.018	0	60	139	1.582944	0.081324816	1.582944	321.05435	0	16.494385						275	5	4	NaN	NaN	NaN	0.042649	1	12099	12099		50.033	28.261	1	26785			20702	3795	11944	12291	16399	16399					0.009081688566766388
PYMANVYLI	9	Unmodified	_PYMANVYLI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.28080313315	2	542.280803	1082.54705	1.1805	0.00064014	-1.3612	-0.00073816	-0.18076	-9.802E-05	542.2807304169899	30.945	0.12068	30.94	30.891	31.012	-0.0050716	1182	103	0.9093879	0.062502444	0.90786844	368.88165	0	25.353333						287	6	4	NaN	NaN	NaN	0.42773	1	11785	11785		12.588	4.2976	1	34315			20703	3795	11944	12291	16400	16400					0.009081688566766388
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(72)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5492444217998	1	1099.54924	1098.54197	2.0627	0.002268	-0.10807	-0.00011883	1.9546	0.0021492	1099.5492823016116	28.098	0.16895	28.098	28.05	28.219	0	90	88	1.5652816	0.051261783	1.5652816	317.41385	0	10.39505						384	8	3	NaN	NaN	NaN	0.020004	1	12786	12786		71.993	27.354	1	72052			20704	3795	11944	12292	16401	16401		419			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(50)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5492444217998	1	1099.54924	1098.54197	1.6511	0.0018155	-0.6544	-0.00071954	0.9967	0.0010959	1099.549352039402	28.097	0.16896	28.088	28.04	28.209	-0.0089798	90	88	1.5652816	0.051251054	1.5637622	317.41385	0	10.392853						387	8	4	NaN	NaN	NaN	0.042649	1	12449	12449		50.033	33.448	1	65280			20705	3795	11944	12292	16402	16402		419			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(41)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2782604442	2	550.27826	1098.54197	1.1121	0.00061194	2.0748	0.0011417	3.1868	0.0017536	550.2794897336292	28.097	0.16897	28.088	28.064	28.233	-0.0089798	1230	82	0.8799654	0.049701393	0.878446	356.8815	0	20.157043						309	8	4	NaN	NaN	NaN	0.062836	1	12451	12451		41.46	26.285	1	55946			20706	3795	11944	12292	16403	16403		419			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)						0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.27826	1098.54197	1.6025	0.00088182	3.5954	0.0019785	5.1979	0.0028603	550.2790385112811	28.074	0.1448	28.074	28.05	28.194	0	1230	88	0.8799654	0.053388774	0.8799654	356.8815		21.652496	-0.0072073	0.0009184	0.00075972	NaN	41.46	321	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49615			20707	3795	11944	12292				419			-0.003361350059549295
PYMDAVVSL	9	Oxidation (M)	_PYM(Oxidation (M))DAVVSL_		PYM(1)DAVVSL		PYM(50)DAVVSL	0	0	1		ENST00000492581.5_1_22:21062337-21064665:-|nuORF;ENST00000466772.5_1_22:21063687-21064617:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENST00000492581.5_1_22:21062337-21064665:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4863098140002	1	1010.48631	1009.47903	1.5374	0.0015535	0.99039	0.0010008	2.5278	0.0025543	1010.4871749860497	24.767	0.12064	24.767	24.695	24.816	0	252	118	1.4695803	0.069304824	1.4695803	298.33325	0	14.069305						222	6	2	NaN	NaN	NaN	0.043119	1	8948	8948		49.833	15.394	1	24601			20708	6074;7115	11945	12293	16404	16404		613			-0.025327007939722535
PYMDAVVSL	9	Oxidation (M)	_PYM(Oxidation (M))DAVVSL_		PYM(1)DAVVSL		PYM(41)DAVVSL	0	0	1		ENST00000492581.5_1_22:21062337-21064665:-|nuORF;ENST00000466772.5_1_22:21063687-21064617:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENST00000492581.5_1_22:21062337-21064665:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4863098140002	1	1010.48631	1009.47903	1.4828	0.0014983	0.4717	0.00047664	1.9545	0.001975	1010.4870712235096	24.719	0.24127	24.707	24.682	24.924	-0.012392	246	100	1.4731345	0.058636308	1.4716152	299.0548	0	11.903503						234	11	2	NaN	NaN	NaN	0.062836	1	8779	8779		41.46	16.499	1	24246			20709	6074;7115	11945	12293	16405	16405		613			-0.025327007939722535
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(72)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2764460367499	2	629.276446	1256.53834	1.4749	0.00092809	-1.4088	-0.00088652	0.066058	4.1569E-05	629.2753861251048	24.357	0.2412	24.357	24.309	24.55	0	1167	67	0.91857195	0.040394723	0.91857195	371.958	0	16.357086						414	11	4	NaN	NaN	NaN	0.0071373	1	17925	17925		72.076	51.627	1	112840			20710	2252	11946	12294	16406	16406		260			-0.07966849570470913
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(64)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2764460367499	2	629.276446	1256.53834	1.3819	0.00086958	-0.82108	-0.00051669	0.56079	0.00035289	629.2758168103564	24.357	0.19307	24.344	24.296	24.489	-0.012747	1167	70	0.91857195	0.04222858	0.9170525	371.958	0	17.09964						493	9	5	NaN	NaN	NaN	0.01741	1	17154	17154		63.765	28.468	1	112910			20711	2252	11946	12294	16407	16407		260			-0.07966849570470913
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2585792471	2	629.258579	1256.50261	1.2042	0.00075778	-1.9709	-0.0012402	-0.76664	-0.00048242	629.2572845216544	32.804	0.16889	32.804	32.732	32.9	0	1164	55	0.9204082	0.033046663	0.9204082	372.70166	0	13.381622						155	5	3	NaN	NaN	NaN	0.36163	1	17914	17914		21.771	12.809	1	22200			20712	2083;5644	11947	12295	16408	16408					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2585792471	2	629.258579	1256.50261	1.033	0.00065001	-1.0286	-0.00064724	0.0044038	2.7711E-06	629.2581586354685	31.839	0.096512	31.839	31.79	31.887	0	1164	43	0.9204082	0.025708497	0.9204082	372.70166	0	10.410187						87	5	2	NaN	NaN	NaN	0.36163	1	17915	17915		21.771	8.7682	1	8524.2			20713	2083;5644	11947	12295	16409	16409					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2585792471	2	629.258579	1256.50261	1.0649	0.00067012	-0.88795	-0.00055875	0.17699	0.00011137	629.2578930271274	33.069	0.19309	33.069	32.973	33.166	0	1164	55	0.9204082	0.033046663	0.9204082	372.70166	0	13.381622						214	9	2	NaN	NaN	NaN	0.34188	1	17916	17916		23.118	7.9422	1	35993			20714	2083;5644	11947	12295	16410	16410					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2585792471	2	629.258579	1256.50261	0.93161	0.00058622	-0.54291	-0.00034163	0.38869	0.00024459	629.2581187870026	31.646	0.16896	31.646	31.597	31.766	0	1164	46	0.9204082	0.027540386	0.9204082	372.70166	0	11.151947						169	8	3	NaN	NaN	NaN	0.3947	1	17917	17917		20.449	14.198	1	19276			20715	2083;5644	11947	12295	16411	16411					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2585792471	2	629.258579	1256.50261	1.3593	0.00085533	-0.52839	-0.00033249	0.83088	0.00052284	629.258489261644	31.284	0.38613	31.284	31.211	31.597	0	1158	79	0.92408	0.047718644	0.92408	374.1885	0	19.322784						928	17	5	NaN	NaN	NaN	0.013093	1	17918	17918		106.56	81.996	1	715780			20716	2083;5644	11947	12295	16412	16412					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2585792471	2	629.258579	1256.50261	0.72574	0.00045668	-2.3693	-0.0014909	-1.6435	-0.0010342	629.2564805392167	33.116	0.096493	33.114	33.114	33.21	-0.0024757	1161	55	0.9222442	0.033043087	0.92072475	373.44513	0	13.380188						117	5	2	NaN	NaN	NaN	0.41527	1	17147	17147		14.425	9.2361	1	19034			20717	2083;5644	11947	12295	16413	16413					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2585792471	2	629.258579	1256.50261	0.82952	0.00052198	-0.71982	-0.00045296	0.10969	6.9026E-05	629.2580660886997	33.044	0.048122	33.042	33.018	33.066	-0.0024757	1158	58	0.92408	0.034873188	0.9225606	374.1885	0	14.121246						90	3	2	NaN	NaN	NaN	0.25424	1	17148	17148		24.562	14.95	1	15900			20718	2083;5644	11947	12295	16414	16414					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2585792471	2	629.258579	1256.50261	1.4953	0.00094092	-0.34539	-0.00021734	1.1499	0.00072358	629.2586334994273	31.283	0.55507	31.277	31.205	31.76	-0.0050716	1158	91	0.92408	0.05506593	0.9225606	374.1885	0	22.297913						1123	24	4	NaN	NaN	NaN	0.0098181	1	17150	17150		118.2	90.415	1	781450			20719	2083;5644	11947	12295	16415	16415					-0.11538563755811992
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-2|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2900167612501	2	551.290017	1100.56548	0.9732	0.00053651	-1.4414	-0.00079464	-0.46822	-0.00025813	551.2890347473705	30.922	0.21716	30.922	30.825	31.042	0	1236	100	0.876284	0.060726464	0.876284	355.38037	0	24.627869						617	10	4	NaN	NaN	NaN	0.014046	1	12871	12871		80.639	36	1	156220			20720	6004	11948	12296	16416	16416					0.019220468228922982
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-2|FNIP1	nc|ENSG00000217128|Q8TF40-2|FNIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2900167612501	2	551.290017	1100.56548	1.3626	0.00075118	-1.7196	-0.00094798	-0.35697	-0.00019679	551.2888774813721	30.92	0.24136	30.915	30.795	31.036	-0.0050716	1233	103	0.87812483	0.0625633	0.8766054	356.12692	0	25.372772						517	11	3	NaN	NaN	NaN	0.0023856	1	12535	12535		109.86	54.444	1	142150			20721	6004	11948	12296	16417	16417					0.019220468228922982
PYNPSTIVGSP	11	Unmodified	_PYNPSTIVGSP_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2876710375501	2	566.287671	1130.56079	1.0814	0.00061237	-2.7957	-0.0015832	-1.7143	-0.00097081	566.2878971585402	27.856	0.14484	27.846	27.798	27.943	-0.009552	1212	94	0.8910048	0.057046056	0.88948536	361.23187	0	23.127655						307	7	4	NaN	NaN	NaN	0.71564	1	13644	13644		6.4299	0.73577	1	85111	+		20722	10884	11949	12297	16418	16418					0.0007311788949664333
PYNPSTIVGSP	11	Unmodified						0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.287671	1130.56079	1.9504	0.0011045	-1.7697	-0.0010022	0.18069	0.00010232	566.7885154561816	27.833	0.072376	27.833	27.808	27.881	0	1212	76	0.8910048	0.045984983	0.8910048	361.23187		18.64328	-0.006897	0.00063666	0.00075972	NaN	6.4299	223	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60910	+		20723	10884	11949	12297							0.0007311788949664333
PYNPSTIVGSP	11	Unmodified						0	0	0			REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.287671	1130.56079	1.0814	0.00061237	-2.7957	-0.0015832	-1.7143	-0.00097081	566.2878971585402	27.856	0.14484	27.846	27.798	27.943	-0.009552	1212	94	0.8910048	0.057046056	0.88948536	361.23187		23.127655	0.006897	-0.00052539	-0.00075972	NaN	6.4299	307	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85111	+		20724	10884	11949	12297							0.0007311788949664333
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.28800538855	2	605.288005	1208.56146	1.1154	0.00067513	-2.5814	-0.0015625	-1.466	-0.00088736	605.2872310273733	20.718	0.19281	20.718	20.67	20.862	0	1173	85	0.91489893	0.05145037	0.91489893	370.6305	0	20.842834						325	9	3	NaN	NaN	NaN	0.032764	1	16687	16687		55.494	37.524	1	36885			20725	6013	11950	12298	16419	16419					-0.03448042670834184
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.28800538855	2	605.288005	1208.56146	0.61645	0.00037313	-1.9774	-0.0011969	-1.3609	-0.00082374	605.2876044969538	20.742	0.21677	20.728	20.68	20.897	-0.014088	1173	82	0.91489893	0.049610198	0.9133795	370.6305	0	20.097382						261	10	2	NaN	NaN	NaN	0.032764	1	16016	16016		55.494	28.197	1	37702			20726	6013	11950	12298	16420	16420					-0.03448042670834184
PYNQQHLYFF	10	Unmodified	_PYNQQHLYFF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.82221234665	2	678.822212	1355.62987	2.0056	0.0013614	-0.60475	-0.00041052	1.4009	0.00095093	678.8225176700689	26.046	0.1207	26.035	25.987	26.107	-0.011135	1083	67	0.9699114	0.040294707	0.96839195	392.43472	0	16.303589						115	6	2	NaN	NaN	NaN	0.75966	1	18724	18724		3.9685	0	1	11171			20727	6013	11951	12299	16421	16421					-0.03371798090984157
PYNQQHLYFF	10	Unmodified						0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	678.822212	1355.62987	1.9022	0.0012912	0.86166	0.00058491	2.7638	0.0018762	679.323649529466	25.998	0.12068	25.998	25.974	26.094	0	1086	55	0.9680805	0.032968342	0.9680805	391.69394		13.339294	-0.01846	0.00077162	-0.00015572	NaN	3.9685	110	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9822.8			20728	6013	11951	12299							-0.03371798090984157
PYPEAIFEL	9	Unmodified	_PYPEAIFEL_					0	0	0		nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3;ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF	nc|ENSG00000142082|Q9NTG7-2|SIRT3	nc|ENSG00000142082|Q9NTG7-2|SIRT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5455392524	1	1078.54554	1077.53826	1.4982	0.0016159	-2.8497	-0.0030736	-1.3515	-0.0014577	1078.54541986596	32.586	0.09655	32.583	32.486	32.583	-0.0031052	111	58	1.5529068	0.033599496	1.5513873	314.9806	0	6.815094						107	5	2	NaN	NaN	NaN	0.16171	1	11553	11553		27.789	0	1	9631.6			20729	3355	11952	12300	16422	16422					0.0025951849186185427
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.88049027486664	3	453.88049	1358.61964	1.6132	0.00073218	-2.4755	-0.0011236	-0.86232	-0.00039139	453.87920609760664	23.031	0.31317	23.031	22.959	23.272	0	1419	43	0.76361835	0.02594322	0.76361835	463.43634	0	15.744812						349	14	3	NaN	NaN	NaN	0.47025	1	19657	19657		20.688	13.398	1	81949			20730	3928	11953	12301	16423	16423					-0.04532361025553655
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.317097179	2	680.317097	1358.61964	1.9463	0.0013241	-0.90593	-0.00061632	1.0404	0.00070778	680.8178605398348	23.007	0.12026	23.007	22.983	23.103	0	1080	67	0.9717421	0.040286005	0.9717421	393.16672	0	16.299683						197	6	4	NaN	NaN	NaN	0.28819	1	19659	19659		40.957	27.954	1	19483			20731	3928	11953	12301	16424	16424					-0.04532361025553655
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.88049027486664	3	453.88049	1358.61964	1.5767	0.00071565	-1.8237	-0.00082774	-0.24697	-0.00011209	454.21410283659503	23.272	0.33781	23.258	23.114	23.451	-0.013294	1419	43	0.76361835	0.02594322	0.7620989	463.43634	0	15.744812						360	15	4	NaN	NaN	NaN	0.12997	1	18755	18755		41.839	32.747	1	69392			20732	3928	11953	12301	16425	16425					-0.04532361025553655
PYPFTHHWQF	10	Unmodified	_PYPFTHHWQF_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.317097179	2	680.317097	1358.61964	1.6542	0.0011254	0.53258	0.00036232	2.1868	0.0014877	680.3176207855524	23.272	0.14475	23.258	23.162	23.307	-0.013294	1077	64	0.9735726	0.038456857	0.9720532	393.90732	0	15.559631						162	7	2	NaN	NaN	NaN	0.022455	1	18761	18761		74.794	56.824	1	21793			20733	3928	11953	12301	16426	16426					-0.04532361025553655
PYPNVPDL	8	Unmodified	_PYPNVPDL_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-3|MEST	REV__nc|ENSG00000106484|Q5EB52-3|MEST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.461809623	1	914.46181	913.454533	0.8016	0.00073303	4.4015	0.004025	5.2031	0.004758	914.4655321541748	33.623	0.19305	33.621	33.525	33.718	-0.0018501	291	79	1.446459	0.0462991	1.4449396	294.05508	0	9.412262						328	9	2	NaN	NaN	NaN	0.67593	1	6174	6174		20.555	1.4371	1	34881	+		20734	8991	11954	12302	16427	16427					-0.005655928851979297
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7873068968	2	578.787307	1155.56006	2.0026	0.0011591	-0.28875	-0.00016713	1.7139	0.00099198	578.7868286134347	27.857	0.19305	27.857	27.784	27.977	0	1197	91	0.9001988	0.055137336	0.9001988	364.86417	0	22.347992						494	9	5	NaN	NaN	NaN	0.01452	1	15007	15007		79.199	29.238	1	118940			20735	1417	11955	12303	16428	16428					-0.01149676759587237
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7873068968	2	578.787307	1155.56006	1.3105	0.00075849	-0.97935	-0.00056683	0.33113	0.00019166	578.7866248561816	27.856	0.26548	27.846	27.726	27.991	-0.009552	1200	97	0.89836043	0.058819473	0.896841	364.11905	0	23.840424						559	12	5	NaN	NaN	NaN	0.030696	1	14505	14505		58.2	15.882	1	135760			20736	1417	11955	12303	16429	16429					-0.01149676759587237
PYQNGFTFHTW	11	Unmodified	_PYQNGFTFHTW_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.31729414425	2	699.317294	1396.62004	1.2115	0.0008472	-1.4133	-0.00098833	-0.20181	-0.00014113	699.3161887214608	24.912	0.26545	24.912	24.864	25.129	0	1068	88	0.97906286	0.05306703	0.97906286	396.0201	0	21.465057						381	12	5	NaN	NaN	NaN	1.1526E-23	1	20035	20035		153.63	115.5	1	54333			20737	5784	11956	12304	16430	16430					-0.06240986096349843
PYQNGFTFHTW	11	Unmodified	_PYQNGFTFHTW_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.31729414425	2	699.317294	1396.62004	1.0623	0.00074288	-1.0807	-0.00075576	-0.018427	-1.2886E-05	699.3158649251008	24.912	0.2895	24.9	24.803	25.093	-0.012392	1068	94	0.97906286	0.056739092	0.9775434	396.0201	0	22.950348						388	13	4	NaN	NaN	NaN	2.0708E-28	1	19094	19094		158.45	115.45	1	56567			20738	5784	11956	12304	16431	16431					-0.06240986096349843
PYQSQIAVF	9	Unmodified	_PYQSQIAVF_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5411225765	1	1052.54112	1051.53385	2.5986	0.0027352	-0.64842	-0.00068249	1.9502	0.0020527	1052.540771353232	26.191	0.096508	26.191	26.167	26.263	0	165	49	1.5210435	0.028352857	1.5210435	308.61417	0	5.7526855						105	5	2	NaN	NaN	NaN	0.21199	1	10692	10692		24.562	4.0487	1	10869			20739	3793	11957	12305	16432	16432					0.010140540689462796
PYQSQIAVF	9	Unmodified	_PYQSQIAVF_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5411225765	1	1052.54112	1051.53385	2.1902	0.0023053	-0.97528	-0.0010265	1.2149	0.0012787	1052.539914985555	26.191	0.096504	26.18	26.156	26.252	-0.011137	168	43	1.5192716	0.024808764	1.5177522	308.25464	0	5.0336						88	5	2	NaN	NaN	NaN	0.27608	1	10476	10476		20.449	6.0236	1	8397.5			20740	3793	11957	12305	16433	16433					0.010140540689462796
PYRCPHCGKAF	11	Unmodified	_PYRCPHCGKAF_					0	0	0		ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.8671988732666	3	426.867199	1277.57977	1.6417	0.0007008	-10.445	-0.0044586	-8.8032	-0.0037578	427.19688332991063	26.408	0.12066	26.408	26.36	26.481	0	1437	46	0.7524962	0.027812898	0.7524962	456.9776	0	16.89029						146	6	4	NaN	NaN	NaN	0.688	1	18368	18368		3.5945	0	1	9299.4			20741	5813	11958	12306	16434	16434					-0.04791947292119403
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.8973698038666	3	404.89737	1211.67028	1.4012	0.00056736	-1.7959	-0.00072716	-0.39467	-0.0001598	404.89682923475283	23.803	0.2169	23.803	23.778	23.995	0	1407	58	0.77102906	0.035199106	0.77102906	468.50412	0	21.388214						275	10	4	NaN	NaN	NaN	0.071077	1	16769	16769		40.006	14.325	1	61713			20742	6112	11959	12307	16435	16435					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.8973698038666	3	404.89737	1211.67028	1.4085	0.00057031	-1.2847	-0.00052017	0.12384	5.0144E-05	404.8967356456433	23.971	0.28943	23.958	23.886	24.175	-0.01305	1404	49	0.77288127	0.029636562	0.7713618	469.62955	0	18.00821						331	13	3	NaN	NaN	NaN	0.055363	1	16100	16100		44.633	22.862	1	60685			20743	6112	11959	12307	16436	16436					0.07291168299434503
PYRRALRCL	9	Unmodified	_PYRRALRCL_					0	0	0		ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.2220819290333	3	383.222082	1146.64442	1.432	0.00054878	8.118	0.003111	9.55	0.0036598	383.2251314409832	22.548	0.12061	22.535	22.462	22.583	-0.01354	1455	31	0.7413668	0.018555045	0.73984736	450.76733	0	11.28183						133	6	3	NaN	NaN	NaN	0.2961	1	14209	14209		19.164	5.2148	1	9836.7			20744	3525	11960	12308	16437	16437					0.07695995576182213
PYRRALRCL	9	Unmodified						0	0	0		ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	383.222082	1146.64442	1.5201	0.00058254	6.553	0.0025113	8.0731	0.0030938	383.2243805187548	22.453	0.12039	22.453	22.405	22.525	0	1455	31	0.7413668	0.018555045	0.7413668	450.76733		11.28186	-0.041108	-0.00072399	0.00075972	NaN	19.164	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10885			20745	3525	11960	12308							0.07695995576182213
PYSDKLFEMVL	11	Unmodified	_PYSDKLFEMVL_					0	0	0		ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3415889825	2	671.341589	1340.66863	1.0177	0.00068323	-2.9505	-0.0019808	-1.9328	-0.0012976	671.3404056524479	30.753	0.19307	30.753	30.68	30.873	0	1077	67	0.9735726	0.040281653	0.9735726	393.96045	0	16.30014						296	9	4	NaN	NaN	NaN	0.10311	1	19419	19419		39.34	12.044	1	46438			20746	2746	11961	12309	16438	16438					0.011917464285261303
PYSDKLFEMVL	11	Unmodified	_PYSDKLFEMVL_					0	0	0		ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3415889825	2	671.341589	1340.66863	0.98534	0.0006615	-2.6049	-0.0017488	-1.6196	-0.0010873	671.3402830144443	30.752	0.21718	30.746	30.673	30.891	-0.0057545	1077	64	0.9735726	0.0384444	0.9720532	393.96045	0	15.556702						312	10	4	NaN	NaN	NaN	0.14916	1	18553	18553		35.056	23.317	1	47566			20747	2746	11961	12309	16439	16439					0.011917464285261303
PYSDKLFEMVL	11	Oxidation (M)	_PYSDKLFEM(Oxidation (M))VL_		PYSDKLFEM(1)VL		PYSDKLFEM(43)VL	0	0	1		ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3390462935499	2	679.339046	1356.66354	1.0867	0.00073823	-0.85236	-0.00057904	0.23433	0.00015919	679.3389565591245	27.446	0.26546	27.436	27.339	27.604	-0.010126	1089	58	0.96624947	0.03479433	0.96473	390.95004	0	14.077972						505	12	6	NaN	NaN	NaN	0.077819	1	18739	18739		42.779	19.693	1	70122			20748	2746	11961	12310	16440	16440		317			-0.0005255743410543801
PYSDKLFEMVL	11	Oxidation (M)						0	0	1		ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	679.339046	1356.66354	1.444	0.00098096	1.7203	0.0011686	3.1642	0.0021496	679.3402780210415	27.446	0.21729	27.446	27.374	27.591	0	1089	49	0.96624947	0.029298902	0.96624947	390.95004		11.854492	0.0054473	0.0018736	0.00075972	NaN	42.779	367	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57054			20749	2746	11961	12310				317			-0.0005255743410543801
PYSEKMTVLF	10	Unmodified	_PYSEKMTVLF_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.80992471335	2	607.809925	1213.6053	1.4429	0.00087699	-3.4989	-0.0021266	-2.056	-0.0012497	607.8074876195326	25.298	0.12063	25.298	25.226	25.346	0	1137	82	0.9369253	0.049556673	0.9369253	379.53568	0	20.074738						138	6	2	NaN	NaN	NaN	0.49667	1	16819	16819		19.592	6.589	1	23105			20750	5830	11962	12311	16441	16441					0.007038057113049945
PYSEKMTVLF	10	Unmodified	_PYSEKMTVLF_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.80992471335	2	607.809925	1213.6053	1.2936	0.00078629	-2.3265	-0.001414	-1.0328	-0.00062775	607.8091697447804	25.298	0.096491	25.286	25.262	25.358	-0.012011	1137	46	0.9369253	0.027513683	0.93540585	379.53568	0	11.145416						107	5	2	NaN	NaN	NaN	0.60059	1	16152	16152		14.854	6.5637	1	24239			20751	5830	11962	12311	16442	16442					0.007038057113049945
PYSINMNVF	9	Unmodified	_PYSINMNVF_					0	0	0		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.76023486655	2	542.760235	1083.50592	1.3469	0.00073105	-1.2459	-0.00067623	0.10101	5.4823E-05	542.7593275603099	29.425	0.14483	29.425	29.401	29.546	0	1242	88	0.87260187	0.053359926	0.87260187	353.95596	0	21.644531						232	7	3	NaN	NaN	NaN	0.028349	1	12113	12113		61.271	34.54	1	35756			20752	1384	11963	12312	16443	16443					-0.03249592182805827
PYSINMNVF	9	Unmodified	_PYSINMNVF_					0	0	0		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5131932665	1	1084.51319	1083.50592	1.5079	0.0016354	-0.1429	-0.00015498	1.365	0.0014804	1084.5133437439822	29.449	0.16896	29.449	29.377	29.546	0	117	91	1.5493695	0.05307722	1.5493695	314.2412	0	10.765045						319	8	3	NaN	NaN	NaN	0.0094682	1	12114	12114		93.472	56.169	1	58926			20753	1384	11963	12312	16444	16444					-0.03249592182805827
PYSINMNVF	9	Unmodified	_PYSINMNVF_					0	0	0		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.5131932665	1	1084.51319	1083.50592	1.2085	0.0013106	-0.66771	-0.00072414	0.5408	0.00058651	1084.5123637598304	29.449	0.16887	29.442	29.393	29.562	-0.0070667	114	82	1.5511382	0.04777205	1.5496187	314.59995	0	9.689087						282	8	3	NaN	NaN	NaN	1.0592E-07	1	11805	11805		137.62	76.346	1	50905			20754	1384	11963	12312	16445	16445					-0.03249592182805827
PYSINMNVF	9	Unmodified	_PYSINMNVF_					0	0	0		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.76023486655	2	542.760235	1083.50592	1.1613	0.00063029	0.13087	7.1033E-05	1.2921	0.00070132	542.7605251651876	29.449	0.14475	29.442	29.393	29.538	-0.0070667	1236	91	0.876284	0.0552029	0.8747646	355.44955	0	22.39212						275	7	3	NaN	NaN	NaN	0.042816	1	11806	11806		49.961	30.798	1	47019			20755	1384	11963	12312	16446	16446					-0.03249592182805827
PYSINMNVF	9	Oxidation (M)	_PYSINM(Oxidation (M))NVF_		PYSINM(1)NVF		PYSINM(55)NVF	0	0	1		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7576921776	2	550.757692	1099.50083	1.7977	0.00099011	-1.1202	-0.00061693	0.67757	0.00037318	550.7568131311042	25.201	0.21712	25.189	25.093	25.31	-0.012011	1248	91	0.8689189	0.055286467	0.86739945	352.39764	0	22.421936						402	10	3	NaN	NaN	NaN	0.032764	1	12489	12489		55.494	33.659	1	112580			20756	1384	11963	12313	16447	16447		157			-0.04493896045414658
PYSINMNVF	9	Oxidation (M)	_PYSINM(Oxidation (M))NVF_		PYSINM(1)NVF		PYSINM(100)NVF	0	0	1		nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	nc|ENSG00000102554|Q13887-4|KLF5	nc|ENSG00000102554|Q13887-4|KLF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.5081078885999	1	1100.50811	1099.50083	2.0809	0.00229	-0.73263	-0.00080626	1.3483	0.0014838	1100.5064141629532	25.201	0.19299	25.189	25.117	25.31	-0.012011	117	85	1.5493695	0.049554467	1.54785	314.18372	0	10.048737						270	9	2	NaN	NaN	NaN	0.0042638	1	12490	12490		104.2	61.881	1	32768			20757	1384	11963	12313	16448	16448		157			-0.04493896045414658
PYSLVDEP	8	Unmodified	_PYSLVDEP_					0	0	0			REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.4407398298999	1	919.44074	918.433463	1.357	0.0012477	-4.7586	-0.0043753	-3.4016	-0.0031276	919.4378377239003	29.425	0.096582	29.425	29.401	29.498	0	303	94	1.4393384	0.055229068	1.4393384	292.58398	0	11.226776						145	5	2	NaN	NaN	NaN	0.45125	1	6383	6383		33.698	11.572	1	12317	+		20758	10788	11964	12314	16449	16449					-0.029016029847184654
PYSLVDEP	8	Unmodified						0	0	0			REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	919.44074	918.433463	1.357	0.0012477	-4.7586	-0.0043753	-3.4016	-0.0031276	919.4378377239003	29.425	0.096582	29.425	29.401	29.498	0	303	94	1.4393384	0.055229068	1.4393384	292.58398		11.226776	-0.008142	-0.00011669	0.00075972	NaN	33.698	145	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12317	+		20759	10788	11964	12314							-0.029016029847184654
PYSSIDQLL	9	Unmodified	_PYSSIDQLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5357028476	1	1035.5357	1034.52843	1.0731	0.0011112	-1.3528	-0.0014009	-0.27972	-0.00028966	1035.5329463161038	28.676	0.096516	28.668	28.668	28.765	-0.0083504	156	109	1.5263584	0.06373322	1.5248389	309.75842	0	12.9339905						243	5	3	NaN	NaN	NaN	0.024221	1	9765	9765		66.656	24.872	1	23339			20760	490	11965	12315	16450	16450					0.012543304864948368
PYTGPDSVPG	10	Unmodified	_PYTGPDSVPG_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4574525266002	1	989.457453	988.450176	2.256	0.0022323	3.7777	0.0037379	6.0338	0.0059702	989.4615652099566	19.948	0.2163	19.948	19.924	20.141	0	294	82	1.4446791	0.048087478	1.4446791	293.36224	0	9.764832						272	10	2	NaN	NaN	NaN	0.53991	1	8154	8154		17.799	0.018654	1	36915			20761	786	11966	12316	16451	16451					-0.04451102098744286
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2689469681501	2	550.268947	1098.52334	1.8471	0.0010164	-1.2494	-0.00068751	0.59772	0.0003289	550.2679684010801	17.957	0.14394	17.957	17.933	18.077	0	1251	70	0.8670771	0.04236573	0.8670771	351.65454	0	17.181946						175	7	2	NaN	NaN	NaN	0.057383	1	12777	12777		43.776	12.984	1	36514			20762	5282	11967	12317	16452	16452					-0.021979733761327225
PYTKVEESF	9	Unmodified						0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.268947	1098.52334	1.9457	0.0010707	-2.0971	-0.001154	-0.15137	-8.3293E-05	550.2681426113109	17.978	0.14394	17.964	17.916	18.06	-0.013786	1251	67	0.8670771	0.040525913	0.8655577	351.65454		16.435822	0.003547	-0.00040239	-0.00075972	NaN	43.776	228	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50768			20763	5282	11967	12317							-0.021979733761327225
PYTSAVLHEVQ	11	Unmodified	_PYTSAVLHEVQ_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.3195024822	2	622.319502	1242.62445	1.7544	0.0010918	-6.8841	-0.0042841	-5.1298	-0.0031923	622.3151774842363	30.053	0.12071	30.053	30.029	30.149	0	1011	118	1.0137935	0.071151316	1.0137935	410.56613	0	28.81485						375	6	3	NaN	NaN	NaN	0.77797	1	17598	17598		0.59723	0	1	38467			20764	806	11968	12318	16453	16453					0.01284478326556382
PYTSWREMF	9	Oxidation (M)	_PYTSWREM(Oxidation (M))F_		PYTSWREM(1)F		PYTSWREM(50)F	0	0	1		ENST00000484812.1_1_6:52945793-52957386:+|nuORF;ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000484812.1_1_6:52945793-52957386:+|nuORF	ENST00000484812.1_1_6:52945793-52957386:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.77387355805	2	616.773874	1231.53319	0.96767	0.00059683	-2.697	-0.0016635	-1.7294	-0.0010666	616.7734638008766	21.344	0.19237	21.33	21.234	21.426	-0.014006	1182	127	0.9093879	0.07719231	0.90786844	368.32034	0	31.264435						531	9	4	NaN	NaN	NaN	0.041983	1	16572	16572		50.315	23.019	1	74489			20765	1857	11969	12319	16454	16454		211			-0.07331108642415529
PYTTEQTLK	9	Unmodified	_PYTTEQTLK_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5571665711998	1	1080.55717	1079.54989	1.0746	0.0011611	3.4621	0.003741	4.5367	0.0049022	1080.5609607351105	31.982	0.14482	31.979	31.954	32.099	-0.0037594	129	82	1.5422925	0.04775679	1.540773	312.82028	0	9.686432						206	7	3	NaN	NaN	NaN	0.25448	1	11656	11656		21.835	5.2508	1	16602	+		20766	8839	11970	12320	16455	16455					0.013297155151803963
PYTVDAIQKK	10	Unmodified	_PYTVDAIQKK_					0	0	0		nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000198947|P11532-13|DMD	nc|ENSG00000198947|P11532-13|DMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8269633735499	2	581.826963	1161.63937	1.8798	0.0010937	-3.8304	-0.0022286	-1.9506	-0.0011349	581.8248765732811	21.753	0.14442	21.74	21.667	21.812	-0.013895	1173	43	0.91489893	0.025722384	0.9133795	370.79947	0	10.425018						72	7	2	NaN	NaN	NaN	0.64158	1	14696	14696		12.049	3.0867	1	5461.7			20767	259	11971	12321	16456	16456					0.06501970194540263
PYVDHFLRL	9	Unmodified	_PYVDHFLRL_					0	0	0		nc|ENSG00000136522|Q9HD33-3|MRPL47;nc|ENSG00000136522|Q9HD33-2|MRPL47;ENSG00000136522|ENST00000476781|MRPL47	nc|ENSG00000136522|Q9HD33-3|MRPL47	nc|ENSG00000136522|Q9HD33-3|MRPL47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.2134693973667	3	387.213469	1158.61858	1.5557	0.00060237	-1.17	-0.00045305	0.38563	0.00014932	387.2134289718899	23.658	0.048214	23.658	23.634	23.682	0	1419	34	0.76361835	0.020385087	0.76361835	464.23987	0	12.393066						74	3	3	NaN	NaN	NaN	0.089764	1	15105	15105		32.778	13.186	1	7570.1			20768	3024	11972	12322	16457	16457					0.04561424605549291
PYVGGLEEF	9	Unmodified	_PYVGGLEEF_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4829389956001	1	1010.48294	1009.47566	1.4072	0.001422	0.66628	0.00067326	2.0735	0.0020952	1010.4837865708278	26.891	0.21715	26.891	26.819	27.036	0	228	61	1.4837929	0.03551638	1.4837929	301.2185	0	7.210022						253	10	3	NaN	NaN	NaN	0.0055068	1	8947	8947		101.55	60.094	1	29448			20769	2608	11973	12323	16458	16458					-0.02869627576330913
PYVGGLEEF	9	Unmodified	_PYVGGLEEF_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4829389956001	1	1010.48294	1009.47566	1.3581	0.0013723	-0.33051	-0.00033398	1.0275	0.0010383	1010.4828139123714	26.891	0.12067	26.88	26.856	26.976	-0.010643	228	55	1.4837929	0.03196478	1.4822735	301.2185	0	6.489044						169	6	3	NaN	NaN	NaN	0.013314	1	8776	8776		82.858	56.127	1	23366			20770	2608	11973	12323	16459	16459					-0.02869627576330913
PYVKVYLLE	9	Unmodified	_PYVKVYLLE_					0	0	0		nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1;ENST00000431478.2_1_6:73100573-73110413:+|nuORF;nc|ENSG00000079841|Q86UR5-11|RIMS1;nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1	nc|ENSG00000079841|Q86UR5-8|RIMS1	nc|ENSG00000079841|Q86UR5-8|RIMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.3235252276	2	562.323525	1122.6325	1.0314	0.00057995	3.6934	0.0020769	4.7248	0.0026568	562.3258006320133	30.004	0.16892	29.997	29.949	30.118	-0.0064106	1188	52	0.90571284	0.031242788	0.9041934	367.226	0	12.6675415						123	8	2	NaN	NaN	NaN	0.23112	1	13385	13385		23.334	1.4994	1	28048			20771	901	11974	12324	16460	16460					0.07608657313994627
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7798162157001	2	526.779816	1051.54508	1.2002	0.00063223	-1.0914	-0.0005749	0.10882	5.7326E-05	526.7786412189982	20.646	0.12044	20.646	20.597	20.718	0	1167	58	0.91857195	0.034895778	0.91857195	372.7451	0	14.160278						140	6	3	NaN	NaN	NaN	0.018156	1	10695	10695		74.332	46.471	1	16713			20772	4518	11975	12325	16461	16461					0.021368761630810695
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7798162157001	2	526.779816	1051.54508	0.89819	0.00047315	-0.30791	-0.0001622	0.59028	0.00031095	526.779671737258	20.67	0.1206	20.656	20.608	20.728	-0.014086	1167	46	0.91857195	0.027543366	0.9170525	372.7451	0	11.176758						146	6	3	NaN	NaN	NaN	0.049695	1	10479	10479		47.04	24.914	1	15393			20773	4518	11975	12325	16462	16462					0.021368761630810695
PYVVRLHNF	9	Unmodified	_PYVVRLHNF_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.2135808477	3	382.213581	1143.61891	1.5873	0.00060667	-2.5384	-0.0009702	-0.95113	-0.00036353	382.21270753015574	19.276	0.023968	19.276	19.276	19.3	0	1488	43	0.7209441	0.026010871	0.7209441	438.36368	0	15.815674						45	2	2	NaN	NaN	NaN	0.36492	1	14594	14594		9.6116	4.327	1	4278.7			20774	1249	11976	12326	16463	16463					0.052848443254106314
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3260679165502	2	572.326068	1142.63758	2.1585	0.0012353	-1.5464	-0.00088502	0.61211	0.00035033	572.3252244162852	28.484	0.1931	28.484	28.436	28.629	0	1182	121	0.9093879	0.073437154	0.9093879	368.6378	0	29.769165						876	9	5	NaN	NaN	NaN	0.012861	1	14562	14562		84.233	47.646	1	392850			20775	4345	11977	12327	16464	16464					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3260679165502	2	572.326068	1142.63758	1.3745	0.00078667	-1.2457	-0.00071297	0.12877	7.3701E-05	572.3253649141957	28.507	0.24128	28.499	28.451	28.692	-0.0083485	1179	106	0.9112251	0.06424707	0.90970564	369.38254	0	26.043762						917	11	5	NaN	NaN	NaN	0.0092442	1	14079	14079		93.929	44.096	1	377190			20776	4345	11977	12327	16465	16465					0.07196961176623518
QAAAAAWA	8	Unmodified	_QAAAAAWA_					0	0	0			REV__nc|ENSG00000169083|P10275-3|AR	REV__nc|ENSG00000169083|P10275-3|AR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.3784143446	1	759.378414	758.371138	1.6076	0.0012208	-5.0742	-0.0038532	-3.4666	-0.0026324	759.3745566792581	30.92	0.14485	30.915	30.867	31.012	-0.0050716	564	52	1.2837118	0.030552626	1.2821923	261.7606	0	6.2299805						92	7	2	NaN	NaN	NaN	0.84876	1	4117	4117		0.39566	0	1	6578.7	+		20777	10534	11978	12328	16466	16466					-0.01771284542394369
QAAARRLL	8	Unmodified	_QAAARRLL_					0	0	0		ENSG00000161664|ENST00000293414|ASB16	REV__MINK1-ALOX12|1|fusion	REV__MINK1-ALOX12|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.5581100447001	1	898.55811	897.550834	-0.32284	-0.00029009	-5.4257	-0.0048753	-5.7486	-0.0051654	898.5536457631131	56.779	0.12017	56.778	56.754	56.874	-0.00056458	201	55	1.4997677	0.031930804	1.4982482	304.97256	0	6.493042						156	6	2	NaN	NaN	NaN	0.84727	1	5915	5915		1.2418	0	1	22495			20778	4102	11979	12329	16467	16467					0.09796019465420613
QAADHQPIL	9	Unmodified	_QAADHQPIL_					0	0	0		ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.76162346255006	2	496.761623	991.508694	1.7832	0.00088584	-1.4951	-0.00074272	0.28811	0.00014312	496.76098173261954	16.566	0.11991	16.566	16.542	16.662	0	1302	43	0.8357362	0.025836706	0.8357362	339.39667	0	10.492371						143	6	3	NaN	NaN	NaN	0.074859	1	8266	8266		39.459	10.792	1	13870			20779	6212	11980	12330	16468	16468					0.012599992663922421
QAADVLELL	9	Unmodified	_QAADVLELL_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	1.4632	0.0014215	0.092813	9.0171E-05	1.556	0.0015117	971.540506915108	32.756	0.096512	32.756	32.732	32.828	0	279	61	1.4535767	0.03556931	1.4535767	295.24393	0	7.22464						109	5	2	NaN	NaN	NaN	0.041983	1	7630	7630		50.315	9.3582	1	9143.3			20780	1495	11981	12331	16469	16469					0.0470663434908829
QAADVLELL	9	Unmodified	_QAADVLELL_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5407882255	1	971.540788	970.533512	1.2389	0.0012037	-0.20871	-0.00020277	1.0302	0.0010009	971.5418871206357	32.779	0.096535	32.776	32.727	32.824	-0.0031052	276	52	1.4553556	0.03023541	1.4538362	295.60526	0	6.141266						88	5	2	NaN	NaN	NaN	0.03618	1	7484	7484		52.78	2.9468	1	7505			20781	1495	11981	12331	16470	16470					0.0470663434908829
QAAFREPRL	9	Unmodified	_QAAFREPRL_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENSG00000168028|ENST00000301821|RPSA;ENST00000416785.1_1_6:28699967-28700618:+|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	363.20508535803333	3	363.205085	1086.59343	1.7757	0.00064494	-1.6876	-0.00061296	0.088057	3.1983E-05	363.2046105333582	16.782	0.23992	16.782	16.638	16.877	0	1461	34	0.7376554	0.020416021	0.7376554	448.80466	0	12.421539						162	11	2	NaN	NaN	NaN	0.2345	1	12252	12252		16.226	3.6561	1	18638			20782	4589	11982	12332	16471	16471					0.053593698029771986
QAAFREPRL	9	Unmodified						0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENSG00000168028|ENST00000301821|RPSA;ENST00000416785.1_1_6:28699967-28700618:+|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	363.205085	1086.59343	2.8882	0.001049	-3.721	-0.0013515	-0.83279	-0.00030248	363.20304296674226	16.802	0.047922	16.789	16.741	16.789	-0.013294	1458	25	0.7395112	0.01484561	0.73799175	449.93378		9.032379	0.0037125	-0.0015565	0.00016818	NaN	16.226	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2584			20783	4589	11982	12332							0.053593698029771986
QAAGCPAG	8	Unmodified	_QAAGCPAG_					0	0	0		ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.2926358047	1	674.292636	673.285359	1.402	0.00094538	-10.782	-0.0072702	-9.3799	-0.0063248	674.2855163213599	54.284	0.095882	54.284	54.236	54.332	0	753	49	1.1701111	0.028945327	1.1701111	239.13138	0	5.915436						110	5	2	NaN	NaN	NaN	0.84876	1	2669	2669		0.39566	0	1	10450			20784	6375	11983	12333	16472	16472					-0.06435192719550287
QAAGCPAG	8	Unmodified						0	0	0		ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	674.292636	673.285359	-0.53798	-0.00036276	-8.4527	-0.0056996	-8.9907	-0.0060623	674.2877815934929	54.282	0.11979	54.281	54.233	54.353	-0.00061798	747	37	1.1737292	0.021706581	1.1722097	239.87079		4.4361115	-0.0013043	0.00094775	0.0010494	NaN	0.39566	99	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6759.5			20785	6375	11983	12333							-0.06435192719550287
QAAGDDEISF	10	Unmodified	_QAAGDDEISF_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4530954301997	1	1052.4531	1051.44582	2.5683	0.002703	-0.19358	-0.00020373	2.3747	0.0024993	1052.4532193920693	23.103	0.1687	23.103	23.055	23.224	0	228	52	1.4837929	0.030190468	1.4837929	301.05646	0	6.1255493						129	8	2	NaN	NaN	NaN	0.0017553	1	10670	10670		86.792	49.49	1	13308			20786	973	11984	12334	16473	16473					-0.07784611312354173
QAAGDDEISF	10	Unmodified	_QAAGDDEISF_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4530954301997	1	1052.4531	1051.44582	1.853	0.0019502	0.29516	0.00031065	2.1481	0.0022608	1052.4537304652122	23.103	0.16877	23.09	23.065	23.234	-0.013294	228	49	1.4837929	0.028413057	1.4822735	301.05646	0	5.764923						133	8	2	NaN	NaN	NaN	0.00024845	1	10451	10451		100.15	27.013	1	14829			20787	973	11984	12334	16474	16474					-0.07784611312354173
QAAGGLGG	8	Unmodified	_QAAGGLGG_					0	0	0		ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	ENSG00000171532|ENST00000302584|NEUROD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.3205651147001	1	630.320565	629.313289	1.6132	0.0010168	4.9549	0.0031232	6.5681	0.00414	630.3247133744476	19.252	0.14402	19.252	19.204	19.348	0	1119	70	0.9479278	0.042146683	0.9479278	193.99385	0	8.625336						118	7	2	NaN	NaN	NaN	0.84876	1	1438	1438		0.39566	0	1	15263			20788	4790	11985	12335	16475	16475					-0.016195464678048666
QAALERQAL	9	Unmodified	_QAALERQAL_					0	0	0		ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.2827230454	2	500.282723	998.550893	2.2066	0.0011039	-2.2274	-0.0011144	-0.020818	-1.0415E-05	500.2817465153834	15.844	0.071838	15.831	15.807	15.879	-0.012611	1311	31	0.83019954	0.018456757	0.8286801	337.11563	0	7.494629						56	4	2	NaN	NaN	NaN	0.19268	1	8350	8350		25.801	2.6834	1	4980.3			20789	2386	11986	12336	16476	16476					0.051559746747557256
QAALERQAL	9	Unmodified						0	0	0		ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.282723	998.550893	1.7738	0.00088739	-2.6131	-0.0013073	-0.83934	-0.00041991	500.28145977896537	15.846	0.095929	15.846	15.822	15.918	0	1311	31	0.83019954	0.018458784	0.83019954	337.11563		7.495453	0.0075132	-0.00026186	0.00075972	NaN	25.801	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4731			20790	2386	11986	12336							0.051559746747557256
QAALQDYEL	9	Unmodified	_QAALQDYEL_					0	0	0		EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENSG00000167880|ENST00000301607|EVPL	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5102163785998	1	1050.51022	1049.50294	1.7505	0.0018389	-1.6524	-0.0017358	0.098134	0.00010309	1050.5078345525924	24.164	0.16889	24.151	24.079	24.248	-0.012749	189	49	1.5068626	0.028373957	1.5053432	305.74457	0	5.7571106						104	8	2	NaN	NaN	NaN	0.024221	1	10384	10384		66.656	31.36	1	8783.8			20791	4573	11987	12337	16477	16477					-0.019831440359666885
QAAPDLHVL	9	Unmodified	_QAAPDLHVL_					0	0	0		ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.26654166495	2	482.266542	962.51853	1.976	0.00095298	-1.6705	-0.00080562	0.30555	0.00014736	482.26551231152104	21.585	0.19283	21.585	21.513	21.705	0	1320	76	0.824661	0.046159327	0.824661	335.03696	0	18.753265						343	9	3	NaN	NaN	NaN	0.032764	1	7410	7410		55.494	16.035	1	125810			20792	3930	11988	12338	16478	16478					0.03577187271753246
QAAPDLHVL	9	Unmodified	_QAAPDLHVL_					0	0	0		ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENST00000524000.5_1_8:124515615-124518835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.26654166495	2	482.266542	962.51853	2.2685	0.001094	-2.1793	-0.001051	0.089197	4.3017E-05	482.26531572166925	21.585	0.19265	21.571	21.499	21.691	-0.013895	1320	70	0.824661	0.04245746	0.8231416	335.03696	0	17.249298						374	9	4	NaN	NaN	NaN	0.032826	1	7254	7254		55.413	29.661	1	127440			20793	3930	11988	12338	16479	16479					0.03577187271753246
QAAPDQFVL	9	Unmodified	_QAAPDQFVL_					0	0	0		ENSG00000138074|ENST00000310574|SLC5A6;ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENSG00000138074|ENST00000310574|SLC5A6	ENSG00000138074|ENST00000310574|SLC5A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5098224481002	1	988.509822	987.502546	1.6424	0.0016235	-8.1223	-0.008029	-6.4799	-0.0064055	988.5006888090178	26.529	0.0965	26.518	26.518	26.614	-0.010645	261	58	1.4642475	0.033781767	1.462728	297.3398	0	6.859955						105	5	2	NaN	NaN	NaN	0.34922	1	7960	7960		15.822	2.8191	1	9712.2			20794	3134	11989	12339	16480	16480					0.00829481034861601
QAARDYTL	8	Unmodified	_QAARDYTL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.2405238797	2	469.240524	936.466495	1.2447	0.00058407	-2.305	-0.0010816	-1.0603	-0.00049754	469.2400536881962	15.414	0.14418	15.414	15.318	15.462	0	1326	58	0.8209676	0.035096288	0.8209676	333.66708	0	14.264252						152	7	2	NaN	NaN	NaN	0.47456	1	6754	6754		32.453	11.897	1	30167			20795	2129	11990	12340	16481	16481					-0.004279761419979877
QAAREFIL	8	Unmodified	_QAAREFIL_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENST00000474858.1_1_7:65970145-65970616:-|nuORF;ENST00000444815.2_1_2:132181395-132181932:-|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.26908435390004	2	474.269084	946.523616	1.5458	0.00073313	-2.0696	-0.00098157	-0.52384	-0.00024844	474.2678676646556	21.85	0.19273	21.85	21.802	21.994	0	1299	40	0.8375814	0.02398467	0.8375814	340.36713	0	9.746643						166	9	3	NaN	NaN	NaN	0.38377	1	7002	7002		37.302	11.187	1	25618			20796	1015	11991	12341	16482	16482					0.048214911343848144
QAAREFIL	8	Unmodified	_QAAREFIL_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENST00000474858.1_1_7:65970145-65970616:-|nuORF;ENST00000444815.2_1_2:132181395-132181932:-|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.26908435390004	2	474.269084	946.523616	0.67381	0.00031957	-10.095	-0.0047878	-9.4213	-0.0044682	474.26482758319895	21.922	0.26489	21.908	21.812	22.077	-0.013897	1356	100	0.8024889	0.06095016	0.8009695	326.10666	0	24.76828						329	12	2	NaN	NaN	NaN	0.26796	1	6872	6872		44.638	0.86287	1	73394			20797	1015	11991	12341	16483	16483					0.048214911343848144
QAAYESQAL	9	Unmodified	_QAAYESQAL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.73781401524997	2	490.737814	979.461075	2.2169	0.0010879	1.8628	0.00091413	4.0797	0.002002	490.73900803618625	18.149	0.095961	18.149	18.125	18.221	0	1308	46	0.83204526	0.027686596	0.83204526	337.95462	0	11.245544						87	5	3	NaN	NaN	NaN	0.18779	1	7858	7858		26.115	9.2566	1	8079.4			20798	3364	11992	12342	16484	16484					-0.02947699724472841
QAAYESQAL	9	Unmodified						0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.737814	979.461075	1.8212	0.00089371	0.2795	0.00013716	2.1007	0.0010309	490.7381310482825	18.17	0.096027	18.156	18.108	18.204	-0.01395	1308	34	0.83204526	0.020301342	0.8305259	337.95462		8.24585	0.0035332	-0.00085425	-0.00075972	NaN	26.115	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8327.3			20799	3364	11992	12342							-0.02947699724472841
QACFIFSLI	9	Unmodified	_QACFIFSLI_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2755207900001	2	521.275521	1040.53649	1.3571	0.00070744	-5.5596	-0.0028981	-4.2025	-0.0021907	521.2730366945455	22.741	0.16867	22.728	22.68	22.848	-0.01354	1263	82	0.85970795	0.04978746	0.8581885	348.90652	0	20.205902						212	8	2	NaN	NaN	NaN	0.16171	1	10018	10018		27.789	2.8278	1	28699			20800	7986	11993	12343	16485	16485					0.017841862022578425
QADAPNPSL	9	Unmodified	_QADAPNPSL_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4421368134	1	912.442137	911.43486	2.4277	0.0022151	-1.0693	-0.00097564	1.3584	0.0012395	912.4414618945524	18.005	0.16788	18.005	17.981	18.149	0	378	103	1.3947657	0.060731888	1.3947657	283.5555	0	12.346802						453	8	3	NaN	NaN	NaN	1.1083E-11	1	6242	6242		143.38	85.18	1	69844			20801	1509	11994	12344	16486	16486					-0.024399688959533705
QADAPNPSL	9	Unmodified	_QADAPNPSL_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4421368134	1	912.442137	911.43486	2.3524	0.0021464	-0.43308	-0.00039516	1.9193	0.0017513	912.4418635568251	18.026	0.21606	18.012	17.964	18.18	-0.013786	372	103	1.3983358	0.060731888	1.3968164	284.28134	0	12.346802						507	10	3	NaN	NaN	NaN	0.0089217	1	6122	6122		94.587	55.128	1	75431			20802	1509	11994	12344	16487	16487					-0.024399688959533705
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.5207810649	1	1092.52078	1091.5135	2.3583	0.0025765	-2.8831	-0.0031498	-0.52471	-0.00057326	1092.5170144660974	28.146	0.19306	28.146	28.098	28.291	0	147	100	1.5316714	0.05840659	1.5316714	310.62305	0	11.844879						345	9	3	NaN	NaN	NaN	0.030261	1	12458	12458		75.698	35.545	1	45754			20803	1366	11995	12345	16488	16488					-0.02859161381525155
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.76402876575	2	546.764029	1091.5135	1.7695	0.00096749	3.8994	0.0021321	5.6689	0.0030995	546.7633315031189	28.146	0.16892	28.146	28.074	28.243	0	1236	79	0.876284	0.047873557	0.876284	355.4168	0	19.417297						360	8	4	NaN	NaN	NaN	0.3106	1	12461	12461		26.115	10.652	1	81003			20804	1366	11995	12345	16489	16489					-0.02859161381525155
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5207810649	1	1092.52078	1091.5135	1.1125	0.0012155	-1.769	-0.0019326	-0.65645	-0.00071718	1092.5172329528737	28.145	0.14483	28.137	28.112	28.257	-0.0089798	144	82	1.533442	0.047797322	1.5319226	310.98215	0	9.693298						300	7	3	NaN	NaN	NaN	0.030261	1	12141	12141		75.698	33.381	1	38800			20805	1366	11995	12345	16490	16490					-0.02859161381525155
QADEEFQIL	9	Unmodified	_QADEEFQIL_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.76402876575	2	546.764029	1091.5135	1.2007	0.00065651	1.5645	0.00085543	2.7652	0.0015119	546.7636430154962	28.145	0.21721	28.137	28.064	28.281	-0.0089798	1233	73	0.87812483	0.04419577	0.8766054	356.16342	0	17.925568						338	10	3	NaN	NaN	NaN	0.11323	1	12143	12143		45.165	28.581	1	76542			20806	1366	11995	12345	16491	16491					-0.02859161381525155
QADEVIAIL	9	Unmodified	_QADEVIAIL_					0	0	0		nc|ENSG00000090530|Q8IVL5-2|P3H2;TP63-LEPREL1|1|fusion;ENSG00000090530|ENST00000319332|P3H2;TP63-LEPREL1|2|fusion;LPP-LEPREL1|1|fusion	nc|ENSG00000090530|Q8IVL5-2|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	2.1095	0.0020495	-0.97943	-0.00095155	1.1301	0.0010979	971.5399047795456	30.149	0.24133	30.149	30.077	30.318	0	273	100	1.4571344	0.058711052	1.4571344	295.96655	0	11.92514						339	11	2	NaN	NaN	NaN	0.030696	1	7629	7629		58.2	15.882	1	43043			20807	1059	11996	12346	16492	16492					0.0470663434908829
QADFALEAL	9	Unmodified	_QADFALEAL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.4938380329	1	977.493838	976.486562	1.9799	0.0019353	-0.51198	-0.00050045	1.4679	0.0014348	977.4937598939512	28.436	0.19308	28.436	28.363	28.556	0	279	88	1.4535767	0.0516001	1.4535767	295.21875	0	10.479889						350	9	3	NaN	NaN	NaN	0.013696	1	7792	7792		81.699	0	1	47453			20808	1529	11997	12347	16493	16493					-0.002622252020501037
QADFALEAL	9	Unmodified	_QADFALEAL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4938380329	1	977.493838	976.486562	1.484	0.0014506	-0.51568	-0.00050408	0.96836	0.00094657	977.4936530804932	28.435	0.16893	28.426	28.402	28.571	-0.0089798	279	88	1.4535767	0.051605582	1.4520572	295.21875	0	10.480988						317	8	3	NaN	NaN	NaN	0.012495	1	7633	7633		85.344	0	1	44123			20809	1529	11997	12347	16494	16494					-0.002622252020501037
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(51)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.25805631835	2	556.258056	1110.50156	1.6375	0.00091085	-1.7261	-0.00096013	-0.088594	-4.9281E-05	556.2569775504991	16.686	0.26389	16.686	16.638	16.901	0	1242	64	0.87260187	0.038677573	0.87260187	353.8479	0	15.684082						379	12	4	NaN	NaN	NaN	0.040769	1	13288	13288		50.831	33.972	1	55478			20810	937	11998	12348	16495	16495		100			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)	_QADFLDKQM(Oxidation (M))_		QADFLDKQM(1)		QADFLDKQM(56)	0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.25805631835	2	556.258056	1110.50156	1.6999	0.00094556	-2.4539	-0.001365	-0.75404	-0.00041944	556.2573463510101	16.683	0.19177	16.669	16.621	16.813	-0.013294	1242	61	0.87260187	0.036833763	0.8710824	353.8479	0	14.936432						289	9	4	NaN	NaN	NaN	0.032689	1	12908	12908		55.592	29.477	1	48673			20811	937	11998	12348	16496	16496		100			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)						0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.258056	1110.50156	1.5102	0.00084007	1.4565	0.00081019	2.9667	0.0016503	556.2593357088484	16.566	0.11991	16.566	16.518	16.638	0	1281	40	0.84864825	0.02396655	0.84864825	344.1345		9.718658	-0.051784	0.0034004	-0.011217	NaN	55.592	105	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7797			20812	937	11998	12348				100			-0.0492710139637893
QADFLDKQM	9	Oxidation (M)						0	0	1		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.258056	1110.50156	2.1151	0.0011765	-2.8456	-0.0015829	-0.73052	-0.00040636	556.2569511277339	16.874	0.095911	16.861	16.861	16.957	-0.013294	1242	46	0.87260187	0.027623832	0.8710824	353.8479		11.201721	0.087621	-0.00091157	-0.00075972	NaN	50.831	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4423.7			20813	937	11998	12348				100			-0.0492710139637893
QADFLDKQM	9	Unmodified	_QADFLDKQM_					0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2605990073	2	548.260599	1094.50665	1.4842	0.00081374	0.029818	1.6348E-05	1.514	0.00083009	548.2612977645766	19.827	0.16842	19.813	19.765	19.934	-0.014141	1248	73	0.8689189	0.044205308	0.86739945	352.41754	0	17.928864						201	8	2	NaN	NaN	NaN	0.040769	1	12265	12265		50.831	25.87	1	44957			20814	937	11998	12349	16497	16497					-0.03682797533747362
QADFLDKQM	9	Unmodified						0	0	0		ENSG00000082641|ENST00000362042|NFE2L1;nc|ENSG00000082641|Q14494-2|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	ENSG00000082641|ENST00000362042|NFE2L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.260599	1094.50665	1.703	0.00093367	2.4197	0.0013266	4.1226	0.0022603	548.2618469584288	19.804	0.19229	19.804	19.756	19.948	0	1248	73	0.8689189	0.044205308	0.8689189	352.4175		17.928833	-0.0045342	0.0011928	0.00075972	NaN	50.831	290	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50349			20815	937	11998	12349							-0.03682797533747362
QADIEVRAL	9	Unmodified	_QADIEVRAL_					0	0	0		nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	nc|ENSG00000130299|Q969Y2-3|GTPBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7825558699	2	507.782556	1013.55056	1.2729	0.00064636	1.6154	0.00082025	2.8883	0.0014666	507.78378703245994	20.02	0.12034	20.006	19.982	20.102	-0.014141	1311	52	0.83019954	0.031374753	0.8286801	337.04782	0	12.737671						183	6	3	NaN	NaN	NaN	0.04743	1	8957	8957		48.002	14.577	1	22659			20816	2632	11999	12350	16498	16498					0.04432554954905754
QADPFLGLAM	10	Oxidation (M)	_QADPFLGLAM(Oxidation (M))_		QADPFLGLAM(1)		QADPFLGLAM(64)	0	0	1		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7655172097	2	539.765517	1077.51648	1.0064	0.00054324	-4.8407	-0.0026128	-3.8342	-0.0020696	540.2658348588701	28.314	0.1689	28.305	28.209	28.378	-0.0089779	1278	97	0.85049206	0.058991432	0.8489726	345.0116	0	23.930511						227	8	3	NaN	NaN	NaN	0.019815	1	11544	11544		63.765	16.283	1	29981			20817	5202	12000	12351	16499	16499		542			-0.019176095283683026
QADPFLGLAM	10	Oxidation (M)						0	0	1		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.765517	1077.51648	2.0521	0.0011076	2.579	0.001392	4.631	0.0024997	540.2682110053514	28.074	0.096514	28.074	28.001	28.098	0	1209	40	0.892844	0.023907006	0.892844	362.19208		9.698151	-0.11581	0.0034138	0.021936	NaN	63.765	49	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2748.9			20818	5202	12000	12351				542			-0.019176095283683026
QADQVDVKL	9	Unmodified	_QADQVDVKL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.27456366229995	2	508.274564	1014.53457	1.5372	0.00078134	-1.0608	-0.00053916	0.47648	0.00024218	508.2735019337464	18.722	0.144	18.708	18.684	18.828	-0.014059	1299	73	0.8375814	0.04431057	0.83606195	340.04034	0	17.989166						155	7	3	NaN	NaN	NaN	0.061945	1	8980	8980		41.839	6.3156	1	18495			20819	5421	12001	12352	16500	16500					0.027888487179893673
QADQVDVKL	9	Unmodified						0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.274564	1014.53457	2.2796	0.0011587	-1.113	-0.00056571	1.1666	0.00059296	508.27418554990965	18.7	0.16801	18.7	18.676	18.844	0	1299	52	0.8375814	0.031374753	0.8375814	340.04034		12.737518	-0.0036271	-2.4537E-05	0.00075972	NaN	41.839	170	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19634			20820	5421	12001	12352							0.027888487179893673
QADSLERSL	9	Unmodified	_QADSLERSL_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.76182042780005	2	509.76182	1017.50909	2.1221	0.0010818	-1.8408	-0.00093837	0.28126	0.00014338	509.7608812110479	17.093	0.21606	17.093	17.045	17.261	0	1296	73	0.8394264	0.044301033	0.8394264	340.77603	0	17.984589						253	10	2	NaN	NaN	NaN	0.40225	1	9266	9266		14.854	5.108	1	61112			20821	3090	12002	12353	16501	16501					0.0010337419557799876
QADSLERSL	9	Unmodified	_QADSLERSL_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.76182042780005	2	509.76182	1017.50909	1.5738	0.00080225	0.14113	7.1941E-05	1.7149	0.00087419	509.76236954787174	17.09	0.23993	17.077	17.053	17.293	-0.013294	1296	82	0.8394264	0.04984671	0.83790696	340.77603	0	20.235931						426	11	4	NaN	NaN	NaN	0.06409	1	9087	9087		53.14	27.339	1	71652			20822	3090	12002	12353	16502	16502					0.0010337419557799876
QAELGDYDL	9	Unmodified	_QAELGDYDL_					0	0	0		nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5;EPB41L5|p.L167V|1|0.16|ENSG00000115109|chr2:120075747-120075747|C/G|missense_variant	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.462931835	1	1023.46293	1022.45566	1.9317	0.001977	1.5428	0.001579	3.4745	0.003556	1023.4657143238259	24.333	0.096527	24.333	24.309	24.406	0	201	52	1.4997677	0.030168176	1.4997677	304.4094	0	6.1232605						86	5	2	NaN	NaN	NaN	0.040769	1	9452	9452		50.831	15.534	1	6995			20823	1990	12003	12354	16503	16503					-0.05467423306959063
QAELGDYDL	9	Unmodified	_QAELGDYDL_					0	0	0		nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5;EPB41L5|p.L167V|1|0.16|ENSG00000115109|chr2:120075747-120075747|C/G|missense_variant	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	nc|ENSG00000115109|Q9HCM4-2|EPB41L5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.462931835	1	1023.46293	1022.45566	1.6411	0.0016797	2.0559	0.0021042	3.6971	0.0037838	1023.463714562714	24.357	0.14484	24.344	24.272	24.417	-0.012747	204	76	1.4979934	0.044378996	1.496474	304.04926	0	9.007629						141	7	2	NaN	NaN	NaN	0.03618	1	9259	9259		52.78	20.327	1	10804			20824	1990	12003	12354	16504	16504					-0.05467423306959063
QAEPILVL	8	Unmodified	_QAEPILVL_					0	0	0			REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.76838586214996	2	441.768386	881.522219	0.36393	0.00016077	-1.0443	-0.00046135	-0.68039	-0.00030058	441.7676805694636	31.235	0.16892	31.235	31.187	31.356	0	1380	67	0.7876915	0.040692866	0.7876915	320.431	0	16.553772						211	8	3	NaN	NaN	NaN	0.47456	1	5825	5825		32.453	2.8544	1	36934	+		20825	11072	12004	12355	16505	16505					0.07671857045602337
QAEPILVL	8	Unmodified	_QAEPILVL_					0	0	0			REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.5294952577	1	882.529495	881.522219	1.0647	0.00093967	1.0192	0.00089949	2.084	0.0018392	882.5300624126894	31.621	0.096573	31.621	31.573	31.67	0	342	52	1.4161754	0.030312777	1.4161754	288.0534	0	6.1656494						122	5	2	NaN	NaN	NaN	0.3434	1	5828	5828		39.459	2.1564	1	19159	+		20826	11072	12004	12355	16506	16506					0.07671857045602337
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.90184254813335	3	419.901843	1256.6837	2.7123	0.0011389	-2.2341	-0.00093811	0.47822	0.0002008	419.90103786186893	11.212	0.35966	11.212	11.116	11.476	0	1416	52	0.76547134	0.031500757	0.76547134	464.93967	0	19.13327						637	16	5	NaN	NaN	NaN	0.0048123	1	17934	17934		77.916	29.597	1	329480			20827	2475	12005	12356	16507	16507					0.06562374340751376
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.90184254813335	3	419.901843	1256.6837	1.2551	0.00052701	-5.898	-0.0024766	-4.6429	-0.0019496	420.2327087202534	11.694	0.096025	11.686	11.662	11.758	-0.0081863	1419	31	0.76361835	0.018530905	0.7620989	463.81418	0	11.255463						60	5	2	NaN	NaN	NaN	0.66841	1	17165	17165		10.213	3.4054	1	6877.1			20828	2475	12005	12356	16508	16508					0.06562374340751376
QAEREEKRVL	10	Unmodified	_QAEREEKRVL_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.90184254813335	3	419.901843	1256.6837	1.5754	0.0006615	-1.7807	-0.00074774	-0.20538	-8.624E-05	419.90116403373094	11.358	0.43196	11.35	11.182	11.614	-0.0075302	1419	73	0.76361835	0.044493377	0.7620989	463.81418	0	27.024841						760	19	4	NaN	NaN	NaN	0.0048123	1	17166	17166		77.916	35.854	1	334190			20829	2475	12005	12356	16509	16509					0.06562374340751376
QAFLPRGDQ	9	Unmodified	_QAFLPRGDQ_					0	0	0		ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.5268694958	1	1031.52687	1030.51959	1.1599	0.0011965	-6.8297	-0.007045	-5.6697	-0.0058485	1031.5191089475095	28.797	0.048275	28.789	28.765	28.813	-0.0083504	153	85	1.5281296	0.049617648	1.5266101	310.13376	0	10.069885						126	3	3	NaN	NaN	NaN	0.63698	1	9593	9593		3.9685	0.39873	1	12397			20830	7110	12006	12357	16510	16510					0.005554016406676965
QAFRRPCYS	9	Unmodified	_QAFRRPCYS_					0	0	0		ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.51867554523335	3	376.518676	1126.5342	1.6503	0.00062138	-8.4259	-0.0031725	-6.7756	-0.0025511	376.51580670121706	14.788	0.072062	14.776	14.776	14.848	-0.011738	1476	28	0.72837335	0.016711295	0.7268539	442.96088	0	10.162964						60	4	2	NaN	NaN	NaN	0.62619	1	13513	13513		2.3381	0	1	4938.3			20831	2499	12007	12358	16511	16511					-0.024008494828422045
QAGAMLLF	8	Unmodified	_QAGAMLLF_					0	0	0		ENSG00000179921|ENST00000519574|GPBAR1	ENSG00000179921|ENST00000519574|GPBAR1	ENSG00000179921|ENST00000519574|GPBAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.4491364467001	1	850.449136	849.44186	1.3319	0.0011327	7.1464	0.0060777	8.4783	0.0072104	850.4550185241591	35.167	0.07243	35.167	35.119	35.191	-4.5776E-05	378	40	1.3947657	0.023212433	1.3932463	283.86316	0	4.724182						62	4	2	NaN	NaN	NaN	0.82797	1	5243	5243		5.4659	0	1	3911.5			20832	5174	12008	12359	16512	16512					0.011116724509179221
QAGKLAPA	8	Unmodified	_QAGKLAPA_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;LETM1|p.D629G|1|0.26|ENSG00000168924|chr4:1816772-1816772|T/C|missense_variant	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4410146014001	1	755.441015	754.433738	1.662	0.0012555	0.95225	0.00071937	2.6142	0.0019749	755.4411646337013	55.821	0.048023	55.821	55.821	55.869	0	585	49	1.2711272	0.028775454	1.2711272	259.2185	0	5.8681335						71	3	2	NaN	NaN	NaN	0.84887	1	4152	4152		0.32989	0	1	8909.2			20833	4644	12009	12360	16513	16513					0.046698615258037535
QAGKVHPG	8	Unmodified	_QAGKVHPG_					0	0	0			REV__ENSG00000179151|ENST00000315127|EDC3	REV__ENSG00000179151|ENST00000315127|EDC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.21939450710005	2	397.219395	792.424236	1.4331	0.00056927	0.78971	0.00031369	2.2228	0.00088296	397.2192395504258	53.779	0.1927	53.779	53.731	53.924	0	1401	58	0.77473325	0.035191536	0.77473325	315.70224	0	14.340454						214	9	3	NaN	NaN	NaN	0.84876	1	4655	4655		0.39566	0	1	48406	+		20834	10801	12010	12361	16514	16514					0.01972093240283357
QAGKVHPG	8	Unmodified						0	0	0			REV__ENSG00000179151|ENST00000315127|EDC3	REV__ENSG00000179151|ENST00000315127|EDC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	397.219395	792.424236	1.4331	0.00056927	0.78971	0.00031369	2.2228	0.00088296	397.2192395504258	53.779	0.1927	53.779	53.731	53.924	0	1401	58	0.77473325	0.035191536	0.77473325	315.70224		14.340454	0.001193	8.082E-05	0.0016857	NaN	0.39566	214	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48406	+		20835	10801	12010	12361							0.01972093240283357
QAGPGAGG	8	Unmodified	_QAGPGAGG_					0	0	0			REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	307.64827072645005	2	307.648271	613.281989	1.2316	0.00037889	1.9936	0.00061334	3.2252	0.00099222	307.65001394324497	39.044	0.40956	39.044	38.9	39.31	0	1503	166	0.711653	0.10229123	0.711653	291.43152	0	41.88965						1420	18	4	NaN	NaN	NaN	0.84945	1	941	941		0	0	1	274510	+		20836	11582	12011	12362	16515	16515					-0.04012119501896905
QAGPGAGG	8	Unmodified	_QAGPGAGG_					0	0	0			REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	307.64827072645005	2	307.648271	613.281989	1.6507	0.00050783	4.0876	0.0012575	5.7382	0.0017654	307.6492171220375	44.208	0.071823	44.208	44.136	44.208	0	1533	31	0.6930556	0.018605411	0.6930556	283.81564	0	7.619171						44	4	2	NaN	NaN	NaN	0.84945	1	942	942		0	0	1	2768.2	+		20837	11582	12011	12362	16516	16516					-0.04012119501896905
QAGPGAGG	8	Unmodified	_QAGPGAGG_					0	0	0			REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	307.64827072645005	2	307.648271	613.281989	1.0295	0.00031673	4.9543	0.0015242	5.9838	0.0018409	307.65050311563095	39.526	0.096146	39.526	39.454	39.55	0	1506	49	0.70979416	0.02973634	0.70979416	290.6703	0	12.177429						62	5	2	NaN	NaN	NaN	0.84945	1	943	943		0	0	1	3399.4	+		20838	11582	12011	12362	16517	16517					-0.04012119501896905
QAGPGAGG	8	Unmodified	_QAGPGAGG_					0	0	0			REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2892649863002	1	614.289265	613.281989	0.2722	0.00016721	8.6244	0.0052979	8.8966	0.0054651	614.2944983116806	31.452	0.096527	31.452	31.38	31.477	0	1179	67	0.9112251	0.040403485	0.9112251	186.58614	0	8.273178						207	5	3	NaN	NaN	NaN	0.84945	1	944	944		0	0	1	41303	+		20839	11582	12011	12362	16518	16518					-0.04012119501896905
QAGPGAGG	8	Unmodified						0	0	0			REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	REV__ENST00000269097.8_1_17:42148148-42148361:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	307.648271	613.281989	1.6507	0.00050783	4.0876	0.0012575	5.7382	0.0017654	307.6492171220375	44.208	0.071823	44.208	44.136	44.208	0	1533	31	0.6930556	0.018605411	0.6930556	283.81564		7.619171	0	0	0	NaN	0	44	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2768.2	+		20840	11582	12011	12362							-0.04012119501896905
QAGSIAIVR	9	Unmodified	_QAGSIAIVR_					0	0	0		ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.7745338725501	2	457.774534	913.534515	2.4999	0.0011444	-1.4024	-0.000642	1.0974	0.00050238	457.7748528073339	16.658	0.048042	16.645	16.621	16.669	-0.013294	1362	31	0.79879075	0.018492699	0.7972713	324.7715	0	7.5187683						35	3	2	NaN	NaN	NaN	0.60736	1	6182	6182		5.1889	1.2204	1	2328.2			20841	4618	12012	12363	16519	16519					0.07428893508676992
QAHLEVQQL	9	Unmodified	_QAHLEVQQL_					0	0	0		nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.28800538855	2	533.288005	1064.56146	2.7755	0.0014802	-4.0463	-0.0021578	-1.2708	-0.00067769	533.2855229669818	18.676	0.26389	18.676	18.628	18.892	0	1248	79	0.8689189	0.04790461	0.8689189	352.54077	0	19.436005						401	12	4	NaN	NaN	NaN	0.021751	1	11336	11336		69.782	35.343	1	229970			20842	3043	12013	12364	16520	16520					0.031759573291765264
QAHLEVQQL	9	Unmodified	_QAHLEVQQL_					0	0	0		nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.28800538855	2	533.288005	1064.56146	1.6944	0.00090363	-2.9922	-0.0015957	-1.2978	-0.0006921	533.2863776844274	18.722	0.26412	18.708	18.66	18.924	-0.014059	1248	85	0.8689189	0.05159515	0.86739945	352.54077	0	20.93335						466	12	4	NaN	NaN	NaN	0.011206	1	11076	11076		89.256	27.984	1	231830			20843	3043	12013	12364	16521	16521					0.031759573291765264
QAHVDFEAM	9	Unmodified	_QAHVDFEAM_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.23184156785	2	524.231842	1046.44913	1.5892	0.00083312	3.5151	0.0018428	5.1044	0.0026759	524.2342735470946	19.756	0.14411	19.756	19.732	19.876	0	1293	46	0.84127116	0.027674615	0.84127116	341.39886	0	11.230713						167	7	3	NaN	NaN	NaN	0.40649	1	10471	10471		13.463	0.46021	1	17266			20844	1521	12014	12365	16522	16522					-0.07223639739322607
QAHVDFEAM	9	Oxidation (M)	_QAHVDFEAM(Oxidation (M))_		QAHVDFEAM(1)		QAHVDFEAM(45)	0	0	1		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2292988789	2	532.229299	1062.44404	1.6554	0.00088107	-0.67563	-0.00035959	0.97981	0.00052148	532.2280703666517	15.939	0.095738	15.927	15.879	15.975	-0.012611	1293	52	0.84127116	0.031361163	0.8397517	341.33212	0	12.724304						129	5	3	NaN	NaN	NaN	0.055351	1	10952	10952		44.638	12.186	1	12342			20845	1521	12014	12366	16523	16523		175			-0.08467943601954175
QAHVDFEAM	9	Oxidation (M)						0	0	1		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.229299	1062.44404	1.8586	0.0009892	-2.036	-0.0010836	-0.17736	-9.4394E-05	532.2285227619914	15.942	0.11986	15.942	15.894	16.014	0	1293	49	0.84127116	0.029518008	0.84127116	341.33212		11.976471	0.0075788	-0.00054491	0.00075972	NaN	44.638	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13865			20846	1521	12014	12366				175			-0.08467943601954175
QAIEELYYF	9	Unmodified	_QAIEELYYF_					0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.28459703235	2	588.284597	1174.55464	1.1268	0.0006629	-3.4612	-0.0020362	-2.3344	-0.0013733	588.2830800774599	30.777	0.12068	30.777	30.704	30.825	0	1179	52	0.9112251	0.031235993	0.9112251	369.26285	0	12.65802						132	6	3	NaN	NaN	NaN	0.44082	1	15628	15628		12.049	1.6885	1	13319			20847	1287	12015	12367	16524	16524					-0.025654003420640947
QAIEELYYF	9	Unmodified						0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	588.284597	1174.55464	1.0118	0.00059522	-4.6455	-0.0027329	-3.6337	-0.0021377	588.2805724263849	30.776	0.14474	30.77	30.673	30.818	-0.0057545	1179	64	0.9112251	0.03858155	0.90970564	369.26285		15.634705	-0.0034277	-0.00080996	-0.00075972	NaN	12.049	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12652			20848	1287	12015	12367							-0.025654003420640947
QAIENAHVL	9	Unmodified	_QAIENAHVL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.76944849465	2	497.769448	993.524344	1.9742	0.00098271	-2.0845	-0.0010376	-0.11032	-5.4913E-05	497.7685304041771	17.573	0.095848	17.573	17.549	17.645	0	1236	37	0.876284	0.022090733	0.876284	355.85345	0	8.970886						87	5	3	NaN	NaN	NaN	0.59509	1	8346	8346		5.6942	0.2283	1	6790.6			20849	3016	12016	12368	16525	16525					0.027322857834292336
QAIGEKVSL	9	Unmodified	_QAIGEKVSL_					0	0	0		ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:87289-88257:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF;ENST00000568710.1_1_16:67585-84971:-|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P	ENSG00000181404|ENST00000696149|WASHC1	ENSG00000181404|ENST00000696149|WASHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.7741995215501	2	472.7742	943.533846	1.8985	0.00089756	-3.0303	-0.0014327	-1.1318	-0.0005351	472.77321025965097	18.245	0.11986	18.245	18.245	18.364	0	1338	64	0.81357855	0.038811624	0.81357855	330.6281	0	15.772583						198	6	4	NaN	NaN	NaN	0.10945	1	6915	6915		34.454	2.0012	1	25669			20850	5223	12017	12369	16526	16526					0.05982054068965681
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	1.293	0.0012562	-3.4428	-0.0033449	-2.1499	-0.0020887	971.5393142147385	30.825	0.096497	30.825	30.825	30.922	0	282	46	1.4517976	0.026684046	1.4517976	294.88257	0	5.4199524						88	5	2	NaN	NaN	NaN	0.042816	1	7625	7625		49.961	13.375	1	5882			20851	3881	12018	12370	16527	16527					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	1.3361	0.0012981	-2.0194	-0.0019619	-0.68331	-0.00066387	971.5398470530175	30.777	0.096539	30.777	30.68	30.777	0	282	43	1.4517976	0.02490902	1.4517976	294.88257	0	5.0594177						81	5	2	NaN	NaN	NaN	0.0084155	1	7626	7626		95.62	31.07	1	7786			20852	3881	12018	12370	16528	16528					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.27403234605	2	486.274032	970.533512	1.6086	0.00078223	-2.075	-0.001009	-0.46643	-0.00022681	486.27315745342486	28.846	0.16893	28.846	28.822	28.991	0	1305	58	0.83389086	0.035077274	0.83389086	338.74738	0	14.249268						140	8	2	NaN	NaN	NaN	0.16171	1	7627	7627		27.789	5.9538	1	13508			20853	3881	12018	12370	16529	16529					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	1.7935	0.0017424	-0.046229	-4.4913E-05	1.7473	0.0016975	971.5407899363778	29.184	0.21718	29.184	29.16	29.377	0	279	61	1.4535767	0.035580635	1.4535767	295.24393	0	7.226959						290	10	2	NaN	NaN	NaN	0.010404	1	7632	7632		91.563	36.07	1	81273			20854	3881	12018	12370	16530	16530					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5407882255	1	971.540788	970.533512	2.339	0.0022725	0.13582	0.00013196	2.4749	0.0024044	971.5407532460065	28.846	0.31378	28.846	28.798	29.112	0	276	247	1.4553556	0.14617586	1.4553556	295.60526	0	29.690613						1138	14	4	NaN	NaN	NaN	7.2154E-36	1	7633	7633		187.6	56.985	1	811830			20855	3881	12018	12370	16531	16531					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.27403234605	2	486.274032	970.533512	1.2297	0.00059797	-1.4045	-0.00068299	-0.17485	-8.5025E-05	486.27356412349263	28.869	0.21719	28.861	28.837	29.054	-0.0083504	1302	58	0.8357362	0.03506595	0.8342168	339.497	0	14.244659						192	10	3	NaN	NaN	NaN	0.14787	1	7483	7483		28.896	1.1068	1	24955			20856	3881	12018	12370	16532	16532					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5407882255	1	971.540788	970.533512	1.1488	0.0011161	0.70138	0.00068142	1.8501	0.0017975	971.5408114634718	29.28	0.048244	29.272	29.248	29.296	-0.0077229	279	58	1.4535767	0.033799767	1.4520572	295.24393	0	6.865265						148	3	3	NaN	NaN	NaN	0.011206	1	7487	7487		89.256	39.423	1	31676			20857	3881	12018	12370	16533	16533					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5407882255	1	971.540788	970.533512	1.3323	0.0012944	0.55559	0.00053977	1.8879	0.0018342	971.5413090556453	28.869	0.072416	28.861	28.837	28.909	-0.0083504	732	115	1.1827712	0.068671465	1.1812518	240.23915	0	13.948227						106	4	2	NaN	NaN	NaN	0.2961	1	7488	7488		19.164	5.122	1	7779.7			20858	3881	12018	12370	16534	16534					0.0470663434908829
QAIGIEVEL	9	Unmodified	_QAIGIEVEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5407882255	1	971.540788	970.533512	1.9786	0.0019222	0.39379	0.00038258	2.3723	0.0023048	971.5412543823696	28.869	0.41029	28.861	28.789	29.199	-0.0083504	276	229	1.4553556	0.13543677	1.4538362	295.60526	0	27.509308						1498	18	5	NaN	NaN	NaN	2.4698E-12	1	7489	7489		151.71	47.003	1	911960			20859	3881	12018	12370	16535	16535					0.0470663434908829
QAIGIEVEL	9	Unmodified						0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	971.540788	970.533512	1.2351	0.0012	-3.6608	-0.0035566	-2.4256	-0.0023566	971.5388620149098	30.776	0.19311	30.77	30.77	30.963	-0.0057545	279	46	1.4535767	0.026681185	1.4520572	295.24396		5.4193726	-0.0034277	-0.00064168	0.00012984	NaN	95.62	139	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10709			20860	3881	12018	12370							0.0470663434908829
QAIGIEVEL	9	Unmodified						0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	971.540788	970.533512	2.0034	0.0019464	-0.10468	-0.0001017	1.8988	0.0018447	971.5438413185229	31.017	0.024118	31.012	31.012	31.036	-0.0050716	267	55	1.4606913	0.03200209	1.4591719	296.68903		6.500122	0.093464	0.0013435	0.0036871	NaN	49.961	48	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3081.4			20861	3881	12018	12370							0.0470663434908829
QAIIQQWLEGT	11	Unmodified	_QAIIQQWLEGT_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000490900.1_1_1:230824170-230825900:+|nuORF;ENST00000478710.1_1_1:230825798-230827388:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.56282686556654	3	429.562827	1285.66665	1.2693	0.00054523	7.1761	0.0030826	8.4453	0.0036278	429.8991200819809	14.524	0.19166	14.513	14.465	14.657	-0.011218	1413	25	0.7673241	0.01481992	0.76580465	465.95096	0	8.999237						78	9	2	NaN	NaN	NaN	0.77378	1	17707	17707		0.38034	0.045833	1	5038.3			20862	2962	12019	12371	16536	16536					0.03524453734917188
QAIKQMYVL	9	Unmodified	_QAIKQMYVL_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3073522346501	2	547.307352	1092.60015	1.1043	0.00060441	1.2256	0.00067078	2.3299	0.0012752	547.3075282999334	14.573	0.16797	14.573	14.501	14.669	0	1233	43	0.87812483	0.025772452	0.87812483	356.159	0	10.453064						100	8	2	NaN	NaN	NaN	0.56671	1	12513	12513		3.9685	0.7569	1	9245.6			20863	5745	12020	12372	16537	16537					0.0575554663935236
QAIKQMYVL	9	Unmodified						0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.307352	1092.60015	1.3573	0.00074289	-0.40107	-0.00021951	0.95627	0.00052338	547.3073148209903	14.764	0.14392	14.752	14.656	14.8	-0.011738	1236	37	0.876284	0.022093058	0.8747646	355.4124		8.960754	0.089394	-0.00089574	-0.0016801	NaN	3.9685	85	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7033.4			20864	5745	12020	12372							0.0575554663935236
QAILFSSKL	9	Unmodified	_QAILFSSKL_					0	0	0		tr|U7T2M6|U7T2M6_FUSNUPropionaldehydedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00504PE=4SV=1	tr|U7T2M6|U7T2M6_FUSNUPropionaldehydedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00504PE=4SV=1	tr|U7T2M6|U7T2M6_FUSNUPropionaldehydedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00504PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.593158147	1	1006.59316	1005.58588	1.4375	0.001447	1.1601	0.0011677	2.5976	0.0026147	1006.5944943366037	37.672	0.28858	37.675	37.651	37.939	0.0028229	174	73	1.5157272	0.042533755	1.5142077	307.71738	0	8.635071						258	13	2	NaN	NaN	NaN	0.56671	1	8656	8656		6.8632	1.1691	1	31664			20865	13961	12021	12373	16538	16538					0.08331217482702868
QAILQEREL	9	Unmodified	_QAILQEREL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000477802.1_1_1:182828020-182829385:+|nuORF;DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.3089377959001	2	550.308938	1098.60332	1.4763	0.00081245	-2.4512	-0.0013489	-0.97487	-0.00053648	550.3073744363501	19.298	0.048082	19.284	19.284	19.332	-0.014141	1233	55	0.87812483	0.033128858	0.8766054	356.1348	0	13.435852						83	3	2	NaN	NaN	NaN	0.097143	1	12471	12471		36.235	9.1884	1	18408			20866	2966	12022	12374	16539	16539					0.05796513017708094
QAKDGLYF	8	Unmodified	_QAKDGLYF_					0	0	0			REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.23999256345	2	471.239993	940.465432	0.023314	1.0987E-05	-4.399	-0.002073	-4.3757	-0.002062	471.23770407198134	14.812	0.16819	14.8	14.752	14.92	-0.011738	1344	40	0.8098828	0.024026215	0.8083634	329.14163	0	9.764435						140	8	2	NaN	NaN	NaN	0.72013	1	6688	6688		17.799	2.6236	1	12669	+		20867	12158	12023	12375	16540	16540					-0.007181905109064246
QALAIQAVL	9	Unmodified	_QALAIQAVL_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.5669433965	1	926.566943	925.559667	1.8087	0.0016759	0.17115	0.00015858	1.9799	0.0018345	926.5681340272504	29.232	0.048267	29.232	29.208	29.256	0	279	40	1.4535767	0.023126125	1.4535767	295.44467	0	4.70047						55	3	2	NaN	NaN	NaN	0.20577	1	6512	6512		24.961	5.8427	1	3303.4			20868	7983	12024	12376	16541	16541					0.09390948311227021
QALASRIW	8	Unmodified	_QALASRIW_					0	0	0		ENST00000460547.6_1_6:43483727-43483814:-|nuORF	ENST00000460547.6_1_6:43483727-43483814:-|nuORF	ENST00000460547.6_1_6:43483727-43483814:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.76925152940004	2	472.769252	943.52395	1.1237	0.00053126	8.4538	0.0039967	9.5775	0.004528	472.7720408826901	18.29	0.19196	18.276	18.18	18.372	-0.01395	1332	70	0.8172735	0.042503357	0.81575406	332.12967	0	17.272858						197	9	3	NaN	NaN	NaN	0.5868	1	6777	6777		26.115	1.7147	1	26491			20869	7075	12025	12377	16542	16542					0.04992910854230104
QALLELEM	8	Unmodified	_QALLELEM_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4913951919001	1	946.491395	945.484119	1.3095	0.0012395	3.0398	0.0028771	4.3493	0.0041166	946.495369836692	29.835	0.09651	29.828	29.803	29.9	-0.0070667	282	73	1.4517976	0.042710304	1.4502782	294.99188	0	8.678314						111	5	2	NaN	NaN	NaN	0.202	1	6828	6828		49.833	5.5305	1	8632.3			20870	4814	12026	12378	16543	16543					0.009196030686439371
QALLLEEVM	9	Unmodified	_QALLLEEVM_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5598091081	1	1045.55981	1044.55253	1.2206	0.0012762	0.72157	0.00075444	1.9422	0.0020306	1045.5604966341468	31.718	0.09654	31.718	31.718	31.815	0	111	73	1.5529068	0.042466283	1.5529068	315.10635	0	8.617004						91	5	2	NaN	NaN	NaN	0.030669	1	10413	10413		58.235	30.447	1	8774.8			20871	1386	12027	12379	16544	16544					0.03203847648478586
QALRDNSTM	9	Oxidation (M)	_QALRDNSTM(Oxidation (M))_		QALRDNSTM(1)		QALRDNSTM(61)	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	DYNC1H1-HSP90AA1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.24548025935	2	526.24548	1050.47641	1.1658	0.00061352	-0.73256	-0.0003855	0.43329	0.00022802	526.2450605260266	11.478	0.21603	11.47	11.374	11.59	-0.0075302	1311	49	0.83019954	0.029527605	0.8286801	336.88907	0	11.982086						169	10	2	NaN	NaN	NaN	0.028569	1	10419	10419		60.984	33.195	1	16475			20872	276;1139;909	12028	12380	16545	16545		21			-0.04681156198944336
QALREKTEI	9	Unmodified	_QALREKTEI_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.2083840194667	3	363.208384	1086.60332	1.9747	0.00071722	-9.0443	-0.003285	-7.0696	-0.0025678	363.20475340352226	16.874	0.071871	16.861	16.837	16.909	-0.013294	1461	37	0.7376554	0.022270858	0.73613596	448.80466	0	13.550049						101	4	3	NaN	NaN	NaN	0.35794	1	11939	11939		10.244	0	1	12571			20873	3981	12029	12381	16546	16546					0.06348513017701407
QALWEEQVL	9	Unmodified	_QALWEEQVL_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2902137265	2	558.290214	1114.56587	1.2992	0.00072536	2.4389	0.0013616	3.7381	0.0020869	558.2919419038866	28.942	0.28959	28.933	28.765	29.054	-0.0083485	1239	88	0.87444305	0.053359926	0.8729236	354.57864	0	21.636963						682	13	4	NaN	NaN	NaN	0.04743	1	13078	13078		48.002	23.44	1	114780			20874	3372	12030	12382	16547	16547					0.01317421752082737
QANNDFFLL	9	Unmodified	_QANNDFFLL_					0	0	0		ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;nc|ENSG00000028528|Q13596-2|SNX1;ENST00000560260.5_1_15:64422114-64427054:+|nuORF	ENSG00000028528|ENST00000559844|SNX1	ENSG00000028528|ENST00000559844|SNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2692813191501	2	541.269281	1080.52401	1.224	0.00066249	0.71696	0.00038807	1.9409	0.0010506	541.2696037346498	32.756	0.14476	32.756	32.732	32.876	0	1236	64	0.876284	0.03866917	0.876284	355.46188	0	15.686005						121	7	2	NaN	NaN	NaN	0.56671	1	11997	11997		6.8632	0.77288	1	15679			20875	486	12031	12383	16548	16548					-0.01303133936426093
QAPAPPGP	8	Unmodified	_QAPAPPGP_					0	0	0		nc|ENSG00000160753|Q9BVN2-2|RUSC1;nc|ENSG00000160753|Q9BVN2-3|RUSC1;ENSG00000160753|ENST00000368352|RUSC1	nc|ENSG00000160753|Q9BVN2-2|RUSC1	nc|ENSG00000160753|Q9BVN2-2|RUSC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.3831653715	1	734.383165	733.375889	1.218	0.00089445	-9.2212	-0.0067719	-8.0033	-0.0058775	734.3765742900501	27.06	0.12066	27.049	27.025	27.146	-0.010126	552	64	1.2908988	0.0377295	1.2893794	263.38544	0	7.6980286						155	6	2	NaN	NaN	NaN	0.84651	1	3723	3723		1.6704	0	1	15026			20876	4074	12032	12384	16549	16549					-0.0014640039962614537
QAPEGLKVKL	10	Unmodified	_QAPEGLKVKL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.55712465650004	3	361.557125	1081.64954	1.2584	0.00045497	-0.9318	-0.0003369	0.32656	0.00011807	361.55708115184973	12.436	0.11994	12.436	12.388	12.508	0	1479	31	0.72651637	0.018571138	0.72651637	442.05267	0	11.299683						76	6	2	NaN	NaN	NaN	0.72095	1	12067	12067		6.6174	1.6005	1	6739.9			20877	5192	12033	12385	16550	16550					0.1119857791979939
QAPFANVPS	9	Unmodified	_QAPFANVPS_					0	0	0			REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF	REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.73761705	2	465.737617	929.460681	0.85841	0.00039979	-1.3547	-0.00063096	-0.49634	-0.00023116	465.73698571260275	21.079	0.12042	21.079	21.055	21.175	0	1260	43	0.8615505	0.025797546	0.8615505	350.1994	0	10.486084						121	6	3	NaN	NaN	NaN	0.66822	1	6587	6587		1.9246	0	1	13854	+		20878	9460	12034	12386	16551	16551					-0.006870746536719707
QAQEYEALL	9	Unmodified	_QAQEYEALL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;CON__P05784	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5258664428	1	1064.52587	1063.51859	2.043	0.0021748	-1.467	-0.0015617	0.57598	0.00061315	1064.5242810774946	25.274	0.12063	25.274	25.25	25.371	0	120	70	1.5476005	0.040703297	1.5476005	313.95663	0	8.257355						196	6	3	NaN	NaN	NaN	0.0073225	1	11276	11276		97.85	3.9209	1	17074			20879	1791	12035	12387	16552	16552					-0.010628575189002731
QAQEYEALL	9	Unmodified	_QAQEYEALL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;CON__P05784	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5258664428	1	1064.52587	1063.51859	1.7166	0.0018274	0.14804	0.00015759	1.8647	0.001985	1064.526228121412	25.274	0.12059	25.262	25.238	25.358	-0.012011	120	67	1.5476005	0.038927436	1.5460811	313.95663	0	7.8970947						143	6	2	NaN	NaN	NaN	0.030545	1	11015	11015		58.398	5.2575	1	15345			20880	1791	12035	12387	16553	16553					-0.010628575189002731
QAQGVPPA	8	Unmodified	_QAQGVPPA_					0	0	0		ENST00000558850.5_1_14:102798056-102800904:+|nuORF	ENST00000558850.5_1_14:102798056-102800904:+|nuORF	ENST00000558850.5_1_14:102798056-102800904:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.20595278084994	2	384.205953	766.397353	1.2355	0.0004747	-2.9168	-0.0011207	-1.6813	-0.00064596	384.2051978277213	24.14	0.12067	24.14	24.068	24.188	0	1434	34	0.75435036	0.020396113	0.75435036	307.57355	0	8.316193						99	6	2	NaN	NaN	NaN	0.84455	1	4307	4307		2.7852	0	1	12524			20881	7585	12036	12388	16554	16554					0.004809846290868336
QAQKDELIL	9	Unmodified	_QAQKDELIL_					0	0	0		ENSG00000163682|ENST00000295955|RPL9;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000464118.2_1_19:30447279-30447516:-|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENSG00000163682|ENST00000295955|RPL9	ENSG00000163682|ENST00000295955|RPL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2980387586001	2	529.298039	1056.58152	1.8028	0.0009542	-1.8368	-0.0009722	-0.034009	-1.8001E-05	529.2969902350768	20.646	0.28917	20.646	20.597	20.887	0	1203	79	0.8965218	0.04783213	0.8965218	363.775	0	19.408478						614	13	5	NaN	NaN	NaN	0.0042638	1	10951	10951		104.2	43.217	1	344550			20882	4252	12037	12389	16555	16555					0.055497082691545074
QAQSSGRRP	9	Unmodified	_QAQSSGRRP_					0	0	0		ENST00000292539.8_1_8:145726633-145726945:+|nuORF	ENST00000292539.8_1_8:145726633-145726945:+|nuORF	ENST00000292539.8_1_8:145726633-145726945:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5126164151002	1	986.512616	985.50534	1.6069	0.0015852	6.4229	0.0063363	8.0298	0.0079215	986.5189672293183	33.069	0.072392	33.069	33.045	33.118	0	264	34	1.4624695	0.01955998	1.4624695	296.987	0	3.9720764						48	4	2	NaN	NaN	NaN	0.6532	1	8065	8065		3.2116	0.058268	1	2783.7			20883	6390	12038	12390	16556	16556					0.012007492123871089
QAQTHLLHD	9	Unmodified	_QAQTHLLHD_					0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5326831552	1	1062.53268	1061.52541	0.89154	0.0009473	3.3365	0.0035451	4.228	0.0044924	1062.5361863186467	33.261	0.14479	33.259	33.186	33.331	-0.0024757	159	100	1.5245869	0.05840659	1.5230675	309.29538	0	11.84903						209	7	2	NaN	NaN	NaN	0.31737	1	10929	10929		17.799	1.2148	1	17698	+		20884	9600	12039	12391	16557	16557					-0.0028949984766768466
QAQTHLLHD	9	Unmodified						0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1062.53268	1061.52541	1.13	0.0012006	4.7116	0.0050062	5.8416	0.0062069	1062.538960043947	33.287	0.096539	33.287	33.287	33.383	0	162	97	1.5228153	0.05663371	1.5228153	308.93594		11.48938	0.013959	0.00085458	-0.00012607	NaN	17.799	143	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9052.9	+		20885	9600	12039	12391							-0.0028949984766768466
QAQTHLLHD	9	Unmodified						0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1062.53268	1061.52541	0.89154	0.0009473	3.3365	0.0035451	4.228	0.0044924	1062.5361863186467	33.261	0.14479	33.259	33.186	33.331	-0.0024757	159	100	1.5245869	0.05840659	1.5230675	309.29538		11.84903	-0.013959	-0.00060656	0.00012607	NaN	17.799	209	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17698	+		20886	9600	12039	12391							-0.0028949984766768466
QAQYEFEF	8	Unmodified	_QAQYEFEF_					0	0	0		ENST00000481597.5_1_3:50356335-50357944:-|nuORF;ENSG00000068001|ENST00000357750|HYAL2	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	ENST00000481597.5_1_3:50356335-50357944:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2323644966	2	531.232364	1060.45018	2.0926	0.0011117	-3.6783	-0.001954	-1.5856	-0.00084233	531.7316571519942	25.298	0.21717	25.298	25.25	25.467	0	1293	67	0.84127116	0.040574074	0.84127116	341.34033	0	16.462708						383	10	6	NaN	NaN	NaN	0.78264	1	11096	11096		11.548	0.37812	1	64029			20887	725	12040	12392	16558	16558					-0.0776310209876101
QARWGITL	8	Unmodified	_QARWGITL_					0	0	0			REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5312265922001	1	944.531227	943.52395	2.0096	0.0018981	-3.696	-0.003491	-1.6864	-0.0015929	944.5275948682103	31.041	0.048262	31.036	31.012	31.06	-0.0050716	270	43	1.458913	0.024898529	1.4573935	296.44653	0	5.0592957						53	3	2	NaN	NaN	NaN	0.84512	1	6775	6775		2.4615	0.28518	1	3633.7	+		20888	8320	12041	12393	16559	16559					0.04992910854230104
QARWGITL	8	Unmodified						0	0	0			REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	944.531227	943.52395	1.2434	0.0011744	-3.8058	-0.0035947	-2.5624	-0.0024203	944.5254290161622	31.042	0.048265	31.042	31.018	31.066	0	270	37	1.458913	0.021343827	1.458913	296.44653		4.3370056	0.0030557	-8.043E-05	0.00075972	NaN	2.4615	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2026.1	+		20889	8320	12041	12393							0.04992910854230104
QARWGITL	8	Unmodified						0	0	0			REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	REV__DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.531227	943.52395	2.0096	0.0018981	-3.696	-0.003491	-1.6864	-0.0015929	944.5275948682103	31.041	0.048262	31.036	31.012	31.06	-0.0050716	270	43	1.458913	0.024898529	1.4573935	296.44653		5.0592957	-0.0030557	2.3269E-05	-0.00075972	NaN	2.4615	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3633.7	+		20890	8320	12041	12393							0.04992910854230104
QARYEEEVL	9	Unmodified	_QARYEEEVL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7827528351501	2	568.782753	1135.55095	2.2751	0.001294	1.1677	0.0006642	3.4428	0.0019582	568.7833772756669	18.005	0.28789	18.005	17.933	18.221	0	1230	49	0.8799654	0.029451072	0.8799654	356.73737	0	11.939453						194	13	4	NaN	NaN	NaN	0.070055	1	14298	14298		40.154	7.701	1	34849			20891	6200	12042	12394	16560	16560					-0.011400701159118398
QARYEEEVL	9	Unmodified	_QARYEEEVL_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7827528351501	2	568.782753	1135.55095	1.7946	0.0010208	0.72717	0.0004136	2.5218	0.0014344	568.7830942070999	18.05	0.19208	18.036	17.988	18.18	-0.013786	1230	37	0.8799654	0.022093058	0.878446	356.73737	0	8.956512						163	9	3	NaN	NaN	NaN	0.21199	1	13829	13829		24.562	1.4444	1	37887			20892	6200	12042	12394	16561	16561					-0.011400701159118398
QASEACSE	8	Unmodified	_QASEACSE_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.3090737299	1	824.309074	823.301797	2.468	0.0020344	-2.5559	-0.0021069	-0.087967	-7.2512E-05	824.307497544095	23.152	0.096403	23.152	23.152	23.248	0	978	31	1.0338683	0.018239021	1.0338683	210.5196	0	3.7138824						52	5	2	NaN	NaN	NaN	0.84455	1	5061	5061		2.7852	0	1	3332	+		20893	10396	12043	12395	16562	16562					-0.11692156344111027
QASEACSE	8	Unmodified						0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	824.309074	823.301797	2.468	0.0020344	-2.5559	-0.0021069	-0.087967	-7.2512E-05	824.307497544095	23.152	0.096403	23.152	23.152	23.248	0	978	31	1.0338683	0.018239021	1.0338683	210.5196		3.7138824	-0.01716	-0.00012014	-0.00015218	NaN	2.7852	52	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3332	+		20894	10396	12043	12395							-0.11692156344111027
QASEACSE	8	Unmodified						0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	824.309074	823.301797	2.7274	0.0022482	-2.2745	-0.0018749	0.45296	0.00037338	824.3088769492883	23.199	0.072397	23.186	23.186	23.258	-0.013294	975	37	1.0356921	0.021886826	1.0341727	210.89096		4.45665	0.01716	0.00011188	0.00015218	NaN	2.7852	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2543.5	+		20895	10396	12043	12395							-0.11692156344111027
QASLEIDSL	9	Unmodified	_QASLEIDSL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4993173413001	1	975.499317	974.492041	2.5947	0.0025312	-0.63979	-0.00062411	1.955	0.0019071	975.4990522195361	25.419	0.33774	25.419	25.25	25.588	0	291	193	1.446459	0.11405182	1.446459	293.78152	0	23.164398						762	15	4	NaN	NaN	NaN	7.355E-12	1	7739	7739		146.99	0	1	402060			20896	5882	12044	12396	16563	16563					0.0037745358977190335
QASLEIDSL	9	Unmodified	_QASLEIDSL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.4993173413001	1	975.499317	974.492041	2.6018	0.002538	0.037763	3.6837E-05	2.6395	0.0025749	975.4999064977432	25.419	0.26544	25.407	25.31	25.575	-0.012011	288	160	1.4482387	0.09440398	1.4467193	294.14297	0	19.173798						802	12	5	NaN	NaN	NaN	3.0773E-07	1	7581	7581		130.13	0	1	391270			20897	5882	12044	12396	16564	16564					0.0037745358977190335
QASPSRGV	8	Unmodified	_QASPSRGV_					0	0	0		ENST00000590550.6_1_19:1577833-1578283:-|nuORF	ENST00000590550.6_1_19:1577833-1578283:-|nuORF	ENST00000590550.6_1_19:1577833-1578283:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.21430912920005	2	401.214309	800.414065	1.3867	0.00055635	1.9077	0.00076541	3.2944	0.0013218	401.2150195940152	24.285	0.048279	24.272	24.248	24.296	-0.012749	1431	37	0.75620437	0.022246659	0.7546849	308.09952	0	9.063934						64	3	3	NaN	NaN	NaN	0.78967	1	4658	4658		10.605	0	1	8772.2			20898	7725	12045	12397	16565	16565					0.005874855150523217
QASVDSLGI	9	Unmodified	_QASVDSLGI_					0	0	0			REV__ENST00000436140.2_1_10:25449038-25449203:+|nuORF	REV__ENST00000436140.2_1_10:25449038-25449203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.4625379045	1	889.462538	888.455261	1.2374	0.0011006	2.7767	0.0024697	4.014	0.0035703	889.4626107285243	22.187	0.12065	22.173	22.149	22.27	-0.013731	390	58	1.3876231	0.033933043	1.3861036	282.21194	0	6.9012146						141	6	2	NaN	NaN	NaN	0.11656	1	5798	5798		33.425	2.8152	1	19388	+		20899	12177	12046	12398	16566	16566					0.006572017638518446
QATAEANNL	9	Unmodified	_QATAEANNL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000477642.5_1_2:38525261-38527422:-|nuORF;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1;ENSG00000184743|ENST00000398868|ATL3	nc|ENSG00000119787|Q8NHH9-3|ATL2;ENSG00000184743|ENST00000398868|ATL3	nc|ENSG00000119787|Q8NHH9-3|ATL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.2276134697	2	466.227613	930.440674	0.99327	0.00046309	-1.0297	-0.00048005	-0.036387	-1.6965E-05	466.22720975596746	15.077	0.21622	15.077	14.981	15.198	0	1308	37	0.83204526	0.022148132	0.83204526	338.20105	0	9.002502						164	10	3	NaN	NaN	NaN	0.18779	1	6614	6614		26.115	8.316	1	18938			20900	2236;5370	12047	12399	16567	16567					-0.027328703842840696
QATAIVLL	8	Unmodified	_QATAIVLL_					0	0	0		ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7;WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	ENSG00000091157|ENST00000254442|WDR7	ENSG00000091157|ENST00000254442|WDR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.5189305714001	1	828.518931	827.511654	1.1141	0.00092305	-2.8279	-0.002343	-1.7138	-0.0014199	828.516509374356	30.679	0.14474	30.673	30.625	30.77	-0.0057545	471	82	1.3393306	0.048380136	1.3378111	272.69604	0	9.850494						264	7	4	NaN	NaN	NaN	0.7718	1	4996	4996		13.003	1.4544	1	60255			20901	1076	12048	12400	16568	16568					0.09099874391188223
QATAQDPVF	9	Unmodified	_QATAQDPVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4734369418001	1	976.473437	975.46616	1.6349	0.0015965	-1.1437	-0.0011168	0.49118	0.00047962	976.4720606031943	21.248	0.14452	21.248	21.175	21.32	0	321	52	1.4286518	0.030286908	1.4286518	290.16077	0	6.151306						188	7	3	NaN	NaN	NaN	2.553E-07	1	7756	7756		132.08	68.348	1	15138			20902	5616	12049	12401	16569	16569					-0.022553958618573233
QATAQDPVF	9	Unmodified	_QATAQDPVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4734369418001	1	976.473437	975.46616	1.5662	0.0015294	-1.2037	-0.0011754	0.36251	0.00035398	976.4726530190718	21.248	0.1444	21.234	21.186	21.33	-0.014004	318	55	1.4304334	0.032066822	1.428914	290.5226	0	6.512787						147	7	2	NaN	NaN	NaN	5.6012E-05	1	7596	7596		125.59	54.992	1	14080			20903	5616	12049	12401	16570	16570					-0.022553958618573233
QATGALYSR	9	Unmodified	_QATGALYSR_					0	0	0		ENSG00000135678|ENST00000551568|CPM;ENST00000546912.1_1_12:69260670-69264157:-|nuORF	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.75379843045	2	483.753798	965.493044	1.9941	0.00096464	-7.7315	-0.0037402	-5.7375	-0.0027755	483.74987860725093	17.045	0.2401	17.045	16.997	17.237	0	1281	67	0.84864825	0.040587306	0.84864825	344.7674	0	16.48877						226	11	2	NaN	NaN	NaN	0.27608	1	7499	7499		20.449	1.3303	1	28302			20904	2953	12050	12402	16571	16571					0.008917127493305088
QATLFDPQL	9	Unmodified	_QATLFDPQL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7716568326	2	516.771657	1031.52876	1.8407	0.00095124	-2.1688	-0.0011208	-0.32808	-0.00016954	516.7708063382033	28.484	0.21722	28.484	28.388	28.605	0	1281	52	0.84864825	0.031344235	0.84864825	344.45728	0	12.72229						202	10	3	NaN	NaN	NaN	0.089764	1	9847	9847		37.302	3.877	1	20491			20905	4075	12051	12403	16572	16572					0.014257502063173888
QATLFDPQL	9	Unmodified	_QATLFDPQL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5360371985998	1	1032.53604	1031.52876	1.7389	0.0017955	0.8744	0.00090285	2.6133	0.0026983	1032.537987330866	28.484	0.14484	28.484	28.46	28.605	0	165	67	1.5210435	0.038985133	1.5210435	308.69165	0	7.911957						197	7	2	NaN	NaN	NaN	0.02431	1	9850	9850		66.544	28.413	1	26980			20906	4075	12051	12403	16573	16573					0.014257502063173888
QATLFDPQL	9	Unmodified	_QATLFDPQL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7716568326	2	516.771657	1031.52876	1.0113	0.00052262	-2.5602	-0.001323	-1.5489	-0.00080042	516.7706373699868	28.483	0.14477	28.475	28.427	28.572	-0.0083504	1275	64	0.85233563	0.0387277	0.8508162	345.95395	0	15.719177						227	7	4	NaN	NaN	NaN	0.04743	1	9634	9634		48.002	7.8484	1	22628			20907	4075	12051	12403	16574	16574					0.014257502063173888
QATLFDPQL	9	Unmodified	_QATLFDPQL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5360371985998	1	1032.53604	1031.52876	1.0908	0.0011263	0.91172	0.00094139	2.0026	0.0020677	1032.537246670346	28.483	0.096508	28.475	28.451	28.547	-0.0083504	162	73	1.5228153	0.042524815	1.5212959	309.0512	0	8.63031						210	5	3	NaN	NaN	NaN	0.019939	1	9637	9637		72.076	31.922	1	24974			20908	4075	12051	12403	16575	16575					0.014257502063173888
QATPGNAH	8	Unmodified	_QATPGNAH_					0	0	0		ENST00000543571.5_1_6:150039213-150039369:-|nuORF	ENST00000543571.5_1_6:150039213-150039369:-|nuORF	ENST00000543571.5_1_6:150039213-150039369:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.1908340329	2	398.190834	794.367115	1.4798	0.00058926	-9.9514	-0.0039626	-8.4716	-0.0033733	398.1873450253972	28.459	0.31369	28.451	28.378	28.692	-0.0083504	1419	91	0.76361835	0.055628836	0.7620989	311.16006	0	22.667694						543	14	5	NaN	NaN	NaN	0.83211	1	4588	4588		4.9097	0.49665	1	296060			20909	7509	12052	12404	16576	16576					-0.038293740360927586
QATREYTL	8	Unmodified	_QATREYTL_					0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.25363125495	2	491.253631	980.49271	1.7053	0.00083774	-2.317	-0.0011383	-0.61174	-0.00030052	491.2524355636482	15.462	0.14416	15.462	15.39	15.534	0	1284	55	0.8468043	0.033196986	0.8468043	343.94434	0	13.483551						161	7	3	NaN	NaN	NaN	0.16458	1	7897	7897		52.78	23.181	1	16648			20910	2490	12053	12405	16577	16577					0.0016829302946916869
QATREYTL	8	Unmodified						0	0	0		nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	nc|ENSG00000126012|P41229-2|KDM5C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	491.253631	980.49271	1.2	0.00058951	-1.6649	-0.0008179	-0.4649	-0.00022839	491.2526971789276	15.46	0.16789	15.448	15.4	15.568	-0.012202	1287	40	0.8449601	0.023976922	0.84344065	343.19528		9.738617	-0.0070011	0.00032837	-0.0016818	NaN	52.78	205	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22363			20911	2490	12053	12405							0.0016829302946916869
QAVAVILSL	9	Unmodified	_QAVAVILSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-5|TCF4	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.5716944234001	1	913.571694	912.564418	1.0859	0.00099202	0.11852	0.00010827	1.2044	0.0011003	913.5720698281791	31.646	0.072397	31.646	31.621	31.694	0	300	52	1.4411188	0.030264378	1.4411188	292.97372	0	6.152649						107	4	3	NaN	NaN	NaN	0.074859	1	6288	6288		39.459	2.1564	1	11332			20912	3255	12054	12406	16578	16578					0.10463832454001931
QAVAVILSL	9	Unmodified	_QAVAVILSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-5|TCF4	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.5716944234001	1	913.571694	912.564418	0.86372	0.00078907	0.66892	0.0006111	1.5326	0.0014002	913.5727789047125	31.645	0.072395	31.64	31.616	31.688	-0.0044174	294	55	1.4446791	0.03204298	1.4431597	293.6975	0	6.5141907						116	4	3	NaN	NaN	NaN	0.032764	1	6165	6165		55.494	13.709	1	12243			20913	3255	12054	12406	16579	16579					0.10463832454001931
QAVEGEIDL	9	Unmodified	_QAVEGEIDL_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.4836672771002	1	973.483667	972.476391	2.3987	0.0023351	-0.39425	-0.0003838	2.0044	0.0019513	973.4835439986972	23.658	0.21689	23.658	23.61	23.827	0	300	127	1.4411188	0.074790835	1.4411188	292.70538	0	15.190735						594	10	4	NaN	NaN	NaN	5.995099999999999E-26	1	7675	7675		172.73	72.749	1	288380			20914	1219	12055	12407	16580	16580					-0.01094832927265088
QAVEGEIDL	9	Unmodified	_QAVEGEIDL_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.4836672771002	1	973.483667	972.476391	2.3226	0.002261	-0.37735	-0.00036735	1.9453	0.0018937	973.4835483881197	23.658	0.4339	23.645	23.476	23.91	-0.013048	300	175	1.4411188	0.10331559	1.4395994	292.70538	0	20.984406						739	19	3	NaN	NaN	NaN	5.4096E-19	1	7525	7525		165.93	59.372	1	313270			20915	1219	12055	12407	16581	16581					-0.01094832927265088
QAVKEYNAL	9	Unmodified	_QAVKEYNAL_					0	0	0		ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.27710635125	2	518.277106	1034.53966	1.9668	0.0010193	-1.4475	-0.00075019	0.51933	0.00026916	518.2761099469725	15.918	0.3358	15.918	15.87	16.206	0	1260	55	0.8615505	0.033171892	0.8615505	349.6808	0	13.463593						355	15	4	NaN	NaN	NaN	0.022082	1	9976	9976		69.363	16.583	1	71246			20916	1012	12056	12408	16582	16582					0.023771525806068894
QAVKEYNAL	9	Unmodified	_QAVKEYNAL_					0	0	0		ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	ENSG00000087884|ENST00000393427|AAMDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.27710635125	2	518.277106	1034.53966	2.11	0.0010936	-1.0377	-0.00053784	1.0723	0.00055575	518.2767117476347	15.915	0.21551	15.903	15.855	16.07	-0.012611	1260	58	0.8615505	0.03501284	0.8600311	349.6808	0	14.210785						278	10	4	NaN	NaN	NaN	0.059222	1	9768	9768		42.995	14.099	1	72466			20917	1012	12056	12408	16583	16583					0.023771525806068894
QAVQEATRL	9	Unmodified	_QAVQEATRL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.28018035645	2	508.28018	1014.54581	1.9391	0.0009856	-2.9788	-0.0015141	-1.0397	-0.00052848	508.27872681618464	15.15	0.33636	15.15	15.101	15.438	0	1296	82	0.8394264	0.04983592	0.8394264	340.78934	0	20.23233						473	15	4	NaN	NaN	NaN	0.02431	1	9160	9160		66.544	31.247	1	133060			20918	7990	12057	12409	16584	16584					0.03911670812135526
QAVQEATRL	9	Unmodified	_QAVQEATRL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.28018035645	2	508.28018	1014.54581	1.3766	0.0006997	-1.3093	-0.00066549	0.067309	3.4212E-05	508.2797949570454	15.148	0.28799	15.136	15.088	15.376	-0.012201	1296	79	0.8394264	0.047992766	0.83790696	340.7893	0	19.48404						485	13	5	NaN	NaN	NaN	0.022185	1	8986	8986		69.233	15.909	1	139770			20919	7990	12057	12409	16585	16585					0.03911670812135526
QAVQELVSL	9	Unmodified	_QAVQELVSL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5516872628001	1	986.551687	985.544411	1.9751	0.0019485	-1.1862	-0.0011702	0.78889	0.00077828	986.5513265451859	26.65	0.096537	26.65	26.601	26.698	0	240	55	1.4766881	0.03197825	1.4766881	299.87427	0	6.4938965						145	5	3	NaN	NaN	NaN	0.023828	1	8074	8074		67.154	17.193	1	19061			20920	1694	12058	12410	16586	16586					0.05106036723384477
QAVQELVSL	9	Unmodified	_QAVQELVSL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5516872628001	1	986.551687	985.544411	1.431	0.0014118	0.3117	0.00030751	1.7427	0.0017193	986.5519764859715	26.649	0.14482	26.639	26.614	26.759	-0.010645	237	61	1.4784646	0.0355314	1.4769452	300.23502	0	7.215454						125	7	2	NaN	NaN	NaN	0.048656	1	7903	7903		47.482	10.179	1	18214			20921	1694	12058	12410	16587	16587					0.05106036723384477
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.76911414365003	2	500.769114	999.523675	1.8947	0.0009488	-2.3363	-0.00117	-0.44163	-0.00022115	500.76802772382564	25.298	0.12062	25.298	25.274	25.395	0	1320	91	0.824661	0.055406213	0.824661	334.8622	0	22.498291						276	6	3	NaN	NaN	NaN	0.060816	1	8571	8571		42.318	1.3607	1	37022			20922	5421	12059	12411	16588	16588					0.023894463437159175
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5309518207001	1	1000.53095	999.523675	2.3356	0.0023369	-1.9266	-0.0019277	0.40898	0.0004092	1000.5286704763228	25.298	0.12062	25.298	25.274	25.395	0	252	91	1.4695803	0.053325534	1.4695803	298.3733	0	10.826843						392	6	4	NaN	NaN	NaN	0.0014219	1	8572	8572		112.76	31.062	1	147790			20923	5421	12059	12411	16589	16589					0.023894463437159175
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5309518207001	1	1000.53095	999.523675	1.8941	0.0018951	-2.6482	-0.0026496	-0.75414	-0.00075454	1000.5284462699143	26.842	0.048273	26.832	26.808	26.856	-0.010645	246	37	1.4731345	0.021327853	1.4716152	299.09494	0	4.330261						50	3	2	NaN	NaN	NaN	0.070055	1	8393	8393		40.154	17.036	1	4000.4			20924	5421	12059	12411	16590	16590					0.023894463437159175
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.76911414365003	2	500.769114	999.523675	1.56	0.00078122	-1.7821	-0.00089242	-0.22206	-0.0001112	500.768380625695	25.298	0.1206	25.286	25.262	25.382	-0.012011	1320	91	0.824661	0.055400252	0.8231416	334.8622	0	22.49585						278	6	4	NaN	NaN	NaN	0.055351	1	8394	8394		44.638	14.028	1	31940			20925	5421	12059	12411	16591	16591					0.023894463437159175
QAVQVDVEL	9	Unmodified	_QAVQVDVEL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5309518207001	1	1000.53095	999.523675	2.1448	0.002146	-1.3435	-0.0013442	0.80135	0.00080178	1000.5293659258438	25.322	0.096491	25.31	25.262	25.358	-0.012011	249	112	1.4713576	0.0657717	1.4698381	298.73413	0	13.353821						249	5	2	NaN	NaN	NaN	0.0042638	1	8395	8395		104.2	48.607	1	108830			20926	5421	12059	12411	16592	16592					0.023894463437159175
QAVRDTATL	9	Unmodified	_QAVRDTATL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.7669058057	2	487.766906	973.519259	1.1432	0.00055761	-1.101	-0.00053702	0.042206	2.0587E-05	487.7663121644366	14.644	0.14371	14.633	14.585	14.728	-0.011219	1290	34	0.84311575	0.020290375	0.8415963	342.48007	0	8.242096						120	7	2	NaN	NaN	NaN	0.04743	1	7559	7559		48.002	8.5435	1	15542			20927	560	12060	12412	16593	16593					0.03143981920800343
QAVRQDPLL	9	Unmodified	_QAVRQDPLL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2983731096001	2	520.298373	1038.58219	2.7086	0.0014093	-1.5954	-0.00083008	1.1132	0.00057921	520.2975266040869	18.676	0.2639	18.676	18.604	18.868	0	1275	94	0.85233563	0.05715102	0.85233563	345.923	0	23.194885						724	12	5	NaN	NaN	NaN	0.0092442	1	10156	10156		93.929	0	1	537930			20928	2003	12061	12413	16594	16594					0.06444547708861137
QAVRQDPLL	9	Unmodified	_QAVRQDPLL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2983731096001	2	520.298373	1038.58219	2.3807	0.0012387	-1.0866	-0.00056536	1.2941	0.00067329	520.2977297161699	18.722	0.23998	18.708	18.612	18.852	-0.014059	1275	91	0.85233563	0.05531043	0.8508162	345.923	0	22.447906						732	11	5	NaN	NaN	NaN	0.01966	1	9949	9949		72.428	0	1	557780			20929	2003	12061	12413	16595	16595					0.06444547708861137
QAYIDFEM	8	Unmodified	_QAYIDFEM_					0	0	0		nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-2|SART3	nc|ENSG00000075856|Q15020-2|SART3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.4393596214001	1	1016.43936	1015.43208	2.3112	0.0023492	-0.29396	-0.0002988	2.0172	0.0020504	1016.438284288841	28.388	0.14481	28.388	28.363	28.508	0	201	70	1.4997677	0.04082012	1.4997677	304.4374	0	8.286041						235	7	3	NaN	NaN	NaN	0.47456	1	9180	9180		32.453	7.4917	1	24303			20930	846	12062	12414	16596	16596					-0.07501560345122016
QAYIDFEM	8	Unmodified	_QAYIDFEM_					0	0	0		nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-2|SART3	nc|ENSG00000075856|Q15020-2|SART3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4393596214001	1	1016.43936	1015.43208	1.5123	0.0015371	1.1646	0.0011838	2.6769	0.0027209	1016.4400481007726	28.411	0.14481	28.402	28.354	28.499	-0.0089798	198	58	1.5015416	0.033706546	1.5000222	304.79752	0	6.8420715						192	7	3	NaN	NaN	NaN	0.076044	1	9001	9001		70.6	28.815	1	20446			20931	846	12062	12414	16597	16597					-0.07501560345122016
QAYIDFEM	8	Oxidation (M)	_QAYIDFEM(Oxidation (M))_		QAYIDFEM(1)		QAYIDFEM(130)	0	0	1		nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-2|SART3	nc|ENSG00000075856|Q15020-2|SART3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.4342742434999	1	1032.43427	1031.427	1.7041	0.0017594	-0.62955	-0.00064996	1.0745	0.0011094	1032.4331589829405	23.803	0.1445	23.803	23.778	23.923	0	207	52	1.496219	0.030168176	1.496219	303.65396	0	6.122528						168	7	3	NaN	NaN	NaN	6.7023E-06	1	9828	9828		130.62	56.287	1	14233			20932	846	12062	12415	16598	16598		89			-0.08745864207730847
QAYIDFEM	8	Oxidation (M)	_QAYIDFEM(Oxidation (M))_		QAYIDFEM(1)		QAYIDFEM(160)	0	0	1		nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-2|SART3	nc|ENSG00000075856|Q15020-2|SART3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.4342742434999	1	1032.43427	1031.427	1.6392	0.0016924	-0.3474	-0.00035866	1.2918	0.0013337	1032.4334646074126	23.826	0.14461	23.813	23.789	23.934	-0.013048	207	49	1.496219	0.028392076	1.4946996	303.65396	0	5.762085						143	7	3	NaN	NaN	NaN	1.9751E-16	1	9618	9618		158.11	105.36	1	12208			20933	846	12062	12415	16599	16599		89			-0.08745864207730847
QAYKYDSPL	9	Unmodified	_QAYKYDSPL_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.76911414365	2	542.769114	1083.52368	1.2968	0.00070385	-10.102	-0.0054829	-8.8049	-0.004779	542.7632599089121	24.526	0.12065	24.514	24.465	24.586	-0.012392	1260	55	0.8615505	0.033157587	0.8600311	349.47314	0	13.449768						157	6	3	NaN	NaN	NaN	0.56671	1	11807	11807		6.8632	0.43328	1	20951	+		20934	10442	12063	12416	16600	16600					-0.014745536562941197
QCEEWSFFH	9	Unmodified	_QCEEWSFFH_					0	0	0		ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.8308077753	3	404.830808	1211.47059	0.38075	0.00015414	7.5209	0.0030447	7.9016	0.0031988	405.16808278788073	38.131	0.16823	38.131	38.059	38.227	0	1461	61	0.7376554	0.037126124	0.7376554	448.2259	0	22.559174						250	8	4	NaN	NaN	NaN	0.63698	1	16750	16750		2.1026	0.57702	1	23487			20935	4674	12064	12417	16601	16601					-0.1266825471059292
QCGGAGKG	8	Unmodified	_QCGGAGKG_					0	0	0			REV__ENST00000272542.7_1_2:113404910-113405027:+|nuORF	REV__ENST00000272542.7_1_2:113404910-113405027:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.303534842	1	677.303535	676.296258	1.099	0.00074437	-2.5551	-0.0017306	-1.4561	-0.00098619	677.3008015690085	27.108	0.12068	27.098	27.049	27.17	-0.010126	702	49	1.2008407	0.028892517	1.1993213	245.38968	0	5.9041595						94	6	2	NaN	NaN	NaN	0.84945	1	2675	2675		0	0	1	7082.1	+		20936	11588	12065	12418	16602	16602					-0.05483790345272155
QCHPVFMQMK	10	Unmodified	_QCHPVFMQMK_					0	0	0		ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.7879464485001	2	624.787946	1247.56134	1.1811	0.00073793	-5.6558	-0.0035337	-4.4747	-0.0027957	625.2861906992117	36.324	0.24084	36.325	36.277	36.518	0.0011024	1152	67	0.92775106	0.04038602	0.9262317	375.7043	0	16.354828						271	11	4	NaN	NaN	NaN	0.77513	1	16966	16966		1.7022	0.66216	1	36269			20937	6740	12066	12419	16603	16603					-0.052538252583190115
QCHPVFMQMK	10	Unmodified						0	0	0		ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.787946	1247.56134	1.4149	0.00088404	-4.8542	-0.0030328	-3.4392	-0.0021488	624.7850071336692	36.326	0.19285	36.326	36.278	36.471	0	1152	55	0.92775106	0.033032417	0.92775106	375.7043		13.376892	0.00029732	0.00045528	0.00075972	NaN	1.7022	303	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47209			20938	6740	12066	12419							-0.052538252583190115
QCLAARDKEE	10	Unmodified	_QCLAARDKEE_					0	0	0			REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.77968721745	2	581.779687	1161.54482	1.7099	0.00099481	-0.97301	-0.00056608	0.73693	0.00042873	582.2835109163162	20.309	0.072132	20.309	20.285	20.357	0	1209	61	0.892844	0.036782026	0.892844	361.86115	0	14.90741						129	4	3	NaN	NaN	NaN	0.5358	1	15198	15198		17.97	2.507	1	15501	+		20939	10666	12067	12420	16604	16604					-0.029489116190688947
QCLAARDKEE	10	Unmodified						0	0	0			REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.779687	1161.54482	1.7099	0.00099481	-0.97301	-0.00056608	0.73693	0.00042873	582.2835109163162	20.309	0.072132	20.309	20.285	20.357	0	1209	61	0.892844	0.036782026	0.892844	361.86115		14.90741	0	0	0	NaN	17.97	129	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15501	+		20940	10666	12067	12420							-0.029489116190688947
QCSRRLYLLDQ	11	Unmodified	_QCSRRLYLLDQ_					0	0	0		ENST00000361906.7_1_22:38616937-38617486:-|nuORF	ENST00000361906.7_1_22:38616937-38617486:-|nuORF	ENST00000361906.7_1_22:38616937-38617486:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.8640855488501	2	697.864086	1393.71362	0.87704	0.00061206	8.1227	0.0056685	8.9997	0.0062806	697.8716496042458	33.671	0.07235	33.67	33.621	33.694	-0.0018463	1047	34	0.99186665	0.020113647	0.9903472	401.20728	0	8.135925						50	4	2	NaN	NaN	NaN	0.73057	1	19073	19073		5.4499	0.72086	1	3527			20941	6611	12068	12421	16605	16605					0.03250990014453237
QDAAQNIVPEC	11	Unmodified	_QDAAQNIVPEC_					0	0	0			REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2716950098501	2	594.271695	1186.52884	0.69414	0.00041251	-9.5632	-0.0056832	-8.8691	-0.0052707	594.2671946288002	30.873	0.24131	30.873	30.825	31.066	0	1197	67	0.9001988	0.040442765	0.9001988	364.75186	0	16.387024						276	11	3	NaN	NaN	NaN	0.76803	1	16047	16047		2.3381	0.1618	1	23392	+		20942	8223	12069	12422	16606	16606					-0.056966178559605396
QDAAQNIVPEC	11	Unmodified						0	0	0			REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	594.271695	1186.52884	0.69414	0.00041251	-9.5632	-0.0056832	-8.8691	-0.0052707	594.2671946288002	30.873	0.24131	30.873	30.825	31.066	0	1197	67	0.9001988	0.040442765	0.9001988	364.75186		16.387024	0.0034287	-0.0018087	-0.00015938	NaN	2.3381	276	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23392	+		20943	8223	12069	12422							-0.056966178559605396
QDAAQNIVPEC	11	Unmodified						0	0	0			REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	REV__chr19:57435593-57518081|233|10.59|0.0|20.01|+|1|TE_info:LTR3B,LTR3B_dup78,ERVK,LTR,acceptor,+,57518081,57518488|ZNF749,None|8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.271695	1186.52884	0.74604	0.00044335	-6.7478	-0.0040101	-6.0018	-0.0035667	594.2684689490457	30.872	0.16896	30.866	30.794	30.963	-0.0057545	1194	73	0.902037	0.04411459	0.9005176	365.49667		17.874817	-0.0034287	0.0015375	0.00015938	NaN	2.3381	248	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22124	+		20944	8223	12069	12422							-0.056966178559605396
QDAIRDKKQWF	11	Unmodified	_QDAIRDKKQWF_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.87805020385	2	717.87805	1433.74155	1.214	0.00087148	-6.3257	-0.0045411	-5.1117	-0.0036696	718.3753588356924	28.701	0.12062	28.701	28.653	28.774	0	972	67	1.0375156	0.040143013	1.0375156	419.5571	0	16.233307						153	6	4	NaN	NaN	NaN	0.63477	1	20297	20297		11.739	2.1272	1	9522.9			20945	356	12070	12423	16607	16607					0.042026362661545136
QDAIRDKKQWF	11	Unmodified						0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	717.87805	1433.74155	1.1725	0.00084173	-6.0712	-0.0043584	-4.8987	-0.0035167	717.8740354640821	28.725	0.072378	28.716	28.692	28.765	-0.0083504	972	46	1.0375156	0.027356982	1.0359962	419.5571		11.062775	0.0075184	0.00018644	-0.00075972	NaN	11.739	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7582			20946	356	12070	12423							0.042026362661545136
QDATSSSA	8	Unmodified	_QDATSSSA_					0	0	0		nc|ENSG00000095637|Q9BX66-7|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	nc|ENSG00000095637|Q9BX66-7|SORBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.3213529756999	1	766.321353	765.314077	1.5007	0.00115	5.1004	0.0039085	6.6011	0.0050586	766.324930697809	21.079	0.09626	21.065	21.065	21.162	-0.014004	621	43	1.2495319	0.025208116	1.2480124	254.74988	0	5.1393433						93	5	2	NaN	NaN	NaN	0.78967	1	4212	4212		10.605	2.3147	1	8309.7			20947	1131	12071	12424	16608	16608					-0.07796796609432022
QDAYGEVEIN	10	Unmodified	_QDAYGEVEIN_					0	0	0		ENST00000530494.1_1_11:407508-408728:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR	ENST00000530494.1_1_11:407508-408728:-|nuORF	ENST00000530494.1_1_11:407508-408728:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2565678744	2	569.256568	1136.49858	2.1477	0.0012226	5.1962	0.002958	7.3439	0.0041806	569.2605369322489	15.508	0.095905	15.496	15.496	15.592	-0.012202	1260	31	0.8615505	0.018422842	0.8600311	349.2685	0	7.4685364						46	5	2	NaN	NaN	NaN	0.64611	1	13855	13855		11.739	0.56853	1	3522.5			20948	5397	12072	12425	16609	16609					-0.06420653249506358
QDDMPPDML	9	Unmodified	_QDDMPPDML_					0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.21754256185	2	531.217543	1060.42053	0.5436	0.00028877	-3.4309	-0.0018226	-2.8873	-0.0015338	531.7163323669815	32.755	0.16894	32.752	32.679	32.848	-0.0031013	1290	82	0.84311575	0.049803615	0.8415963	342.0889	0	20.20752						233	8	2	NaN	NaN	NaN	0.39244	1	10854	10854		14.042	1.0388	1	23155	+		20949	8407	12073	12426	16610	16610					-0.10726125430778666
QDLSTPVLR	9	Unmodified	_QDLSTPVLR_					0	0	0		ENST00000395831.7_1_7:44113452-44119198:-|nuORF;ENSG00000122678|ENST00000242248|POLM	ENST00000395831.7_1_7:44113452-44119198:-|nuORF	ENST00000395831.7_1_7:44113452-44119198:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7903809019999	2	514.790381	1027.56621	1.3384	0.000689	-2.2086	-0.001137	-0.87021	-0.00044798	514.7892286450153	21.922	0.072327	21.908	21.884	21.956	-0.013897	1323	55	0.8228144	0.033225775	0.82129496	333.98856	0	13.486664						72	4	3	NaN	NaN	NaN	0.49672	1	9494	9494		9.746	0	1	7239			20950	2336	12074	12427	16611	16611					0.05352841471926695
QDLVLPTPP	9	Unmodified	_QDLVLPTPP_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.5458736033999	1	979.545874	978.538597	1.5795	0.0015472	4.5726	0.0044791	6.1522	0.0060263	979.5509246197562	34.685	0.16869	34.684	34.612	34.78	-0.0006485	201	82	1.4997677	0.04790902	1.4982482	304.59113	0	9.72995						214	8	2	NaN	NaN	NaN	0.14301	1	7684	7684		29.598	3.8465	1	22224			20951	3943	12075	12428	16612	16612					0.04846938211687757
QDLWKNIL	8	Unmodified	_QDLWKNIL_					0	0	0		ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2900167612501	2	515.290017	1028.56548	2.0343	0.0010483	-6.7943	-0.003501	-4.76	-0.0024528	515.2864542837642	16.134	0.095959	16.134	16.11	16.206	0	1275	37	0.85233563	0.022124112	0.85233563	345.9671	0	8.980286						68	5	2	NaN	NaN	NaN	0.82797	1	9723	9723		5.4659	0.55612	1	6644.2			20952	6322	12076	12429	16613	16613					0.05234046822897653
QDMEDLYADVF	11	Unmodified	_QDMEDLYADVF_					0	0	0			REV__ENSG00000186104|ENST00000334636|CYP2R1	REV__ENSG00000186104|ENST00000334636|CYP2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.2844680340999	2	673.284468	1344.55438	0.85514	0.00057575	4.0031	0.0026952	4.8582	0.003271	673.2872125982552	27.349	0.24131	27.339	27.267	27.508	-0.010126	1113	91	0.9515937	0.05497694	0.95007426	385.0552	0	22.245972						487	11	4	NaN	NaN	NaN	0.66717	1	18610	18610		9.6116	0.69255	1	61541	+		20953	10990	12077	12430	16614	16614					-0.10411188124248838
QDMWHAGSLLQ	11	Unmodified	_QDMWHAGSLLQ_					0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	429.2046451483667	3	429.204645	1284.59211	1.3709	0.00058839	1.6372	0.00070269	3.0081	0.0012911	429.2062339458763	19.324	0.071981	19.324	19.3	19.372	0	1434	31	0.75435036	0.018538952	0.75435036	458.07687	0	11.25769						82	4	3	NaN	NaN	NaN	0.56282	1	18510	18510		12.063	8.154	1	7944.4	+	+	20954	13001	12078	12431	16615	16615					-0.03880632348068502
QDPPVGGL	8	Unmodified	_QDPPVGGL_					0	0	0			REV__LAMA5|p.Y3064C|1|0.16|ENSG00000130702|chr20:62312668-62312668|T/C|missense_variant	REV__LAMA5|p.Y3064C|1|0.16|ENSG00000130702|chr20:62312668-62312668|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4042947441002	1	782.404295	781.397018	1.5296	0.0011968	4.971	0.0038893	6.5006	0.0050861	782.4082264665384	29.111	0.19311	29.103	29.055	29.248	-0.0077209	534	100	1.3016734	0.05924499	1.300154	265.2841	0	12.074249						428	9	3	NaN	NaN	NaN	0.77489	1	4428	4428		12.588	0	1	114600	+		20955	9491	12079	12432	16616	16616					-0.0024243509075176917
QDQFFHRTS	9	Unmodified	_QDQFFHRTS_					0	0	0			REV__ENST00000486047.5_1_9:4605401-4627755:-|nuORF	REV__ENST00000486047.5_1_9:4605401-4627755:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2728866406001	2	583.272887	1164.53122	3.3641	0.0019622	-2.7454	-0.0016013	0.6187	0.00036087	583.7721477983446	9.8718	0.023953	9.8646	9.8407	9.8646	-0.0071888	1419	31	0.76361835	0.018532872	0.7620989	309.47794	0	7.510956						26	2	2	NaN	NaN	NaN	0.67989	1	14763	14763		0.92586	0	1	1409.8	+		20956	8996	12080	12433	16617	16617					-0.04446401336008421
QDREEEDE	8	Unmodified	_QDREEEDE_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2045323039	2	525.204532	1048.39451	0.80433	0.00042244	0.69273	0.00036382	1.4971	0.00078626	525.7059789997402	35.554	0.07235	35.554	35.53	35.603	0	1287	40	0.8449601	0.023979485	0.8449601	342.88763	0	9.730957						84	4	3	NaN	NaN	NaN	0.77489	1	10551	10551		12.588	0	1	4752.1	+		20957	11370	12081	12434	16618	16618					-0.12774980077028886
QDRKIFRGLEI	11	Unmodified	_QDRKIFRGLEI_					0	0	0		IFI35-BRCA1|2|fusion;IFI35-BRCA1|1|fusion;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1;nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	IFI35-BRCA1|2|fusion	IFI35-BRCA1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.93325412686664	3	458.933254	1373.77793	0.92704	0.00042545	0.5677	0.00026054	1.4947	0.00068599	458.9337627987555	22.356	0.12023	22.342	22.318	22.438	-0.013731	1386	34	0.78399014	0.020358562	0.7824707	475.74707	0	12.354126						105	6	3	NaN	NaN	NaN	0.63477	1	18908	18908		8.4563	3.5556	1	9930.2			20958	414	12082	12435	16619	16619					0.10599513162878793
QDSEMVEL	8	Unmodified	_QDSEMVEL_					0	0	0		ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4135388014	1	950.413539	949.406262	1.7288	0.0016431	0.73964	0.00070296	2.4685	0.0023461	950.4152495467392	23.778	0.12051	23.765	23.741	23.861	-0.013048	330	55	1.4233059	0.032080412	1.4217864	289.1855	0	6.5180664						131	6	2	NaN	NaN	NaN	0.05596	1	6929	6929		76.739	0	1	14225			20959	5134	12083	12436	16620	16620					-0.07046454587396056
QDTWLRIRNEW	11	Unmodified	_QDTWLRIRNEW_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.8864065522001	2	758.886407	1515.75826	1.5788	0.0011982	4.2082	0.0031936	5.7871	0.0043917	758.8894915530926	24.791	0.12062	24.779	24.755	24.875	-0.012394	1017	106	1.010141	0.06386739	1.0086216	408.27585	0	25.813751						326	6	4	NaN	NaN	NaN	0.74155	1	19608	19608		4.7291	0	1	72184	+		20960	10497	12084	12437	16621	16621					0.021011371521353794
QDVDMCFMF	9	Unmodified	_QDVDMCFMF_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1135.4257001670999	1	1135.4257	1134.41842	0.5613	0.00063731	-7.3528	-0.0083486	-6.7915	-0.0077113	1135.4181556853391	31.813	0.1689	31.809	31.785	31.954	-0.0044155	111	100	1.5529068	0.05840659	1.5513873	314.78082	0	11.839264						345	8	3	NaN	NaN	NaN	0.41766	1	13783	13783		13.003	4.0409	1	26365	+		20961	10923	12085	12438	16622	16622					-0.14340877440236
QDVDMCFMF	9	Unmodified						0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1135.4257	1134.41842	1.7572	0.0019952	-8.267	-0.0093866	-6.5097	-0.0073913	1135.4168097712643	31.815	0.16895	31.815	31.766	31.935	0	111	103	1.5529068	0.06017971	1.5529068	314.78082		12.198669	0.002734	-0.00047718	0.00075972	NaN	13.003	355	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27777	+		20962	10923	12085	12438							-0.14340877440236
QDVDMCFMF	9	Unmodified						0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1135.4257	1134.41842	0.5613	0.00063731	-7.3528	-0.0083486	-6.7915	-0.0077113	1135.4181556853391	31.813	0.1689	31.809	31.785	31.954	-0.0044155	111	100	1.5529068	0.05840659	1.5513873	314.78082		11.839264	-0.002734	0.00056079	-0.00075972	NaN	13.003	345	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26365	+		20963	10923	12085	12438							-0.14340877440236
QDVDVAIL	8	Unmodified	_QDVDVAIL_					0	0	0		nc|ENSG00000142185|O94759-3|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2	nc|ENSG00000142185|O94759-3|TRPM2	nc|ENSG00000142185|O94759-3|TRPM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.4723743093001	1	872.472374	871.465098	0.90774	0.00079197	-0.40288	-0.0003515	0.50485	0.00044047	872.4720373969585	22.115	0.24098	22.101	21.981	22.222	-0.013731	426	79	1.3661768	0.04651141	1.3646574	277.93286	0	9.462189						287	11	2	NaN	NaN	NaN	0.47456	1	5542	5542		32.453	0	1	32044			20964	3359	12086	12439	16623	16623					0.024223897692422725
QDWTNQRL	8	Unmodified	_QDWTNQRL_					0	0	0		ENSG00000100908|ENST00000216799|EMC9;ENST00000558045.2_1_14:24608221-24608440:-|nuORF	ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7621547788001	2	530.762155	1059.50976	0.84156	0.00044667	-2.8163	-0.0014948	-1.9748	-0.0010481	530.7608439438224	36.806	0.09631	36.807	36.783	36.88	0.0016785	1278	70	0.85049206	0.042397797	0.8489726	345.08557	0	17.20282						150	5	2	NaN	NaN	NaN	0.78967	1	10820	10820		10.605	1.4818	1	12606			20965	1285	12087	12440	16624	16624					-0.01761786364704676
QEAIQDLWQW	10	Unmodified	_QEAIQDLWQW_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.81712696875	2	658.817127	1315.6197	0.663	0.0004368	-5.1204	-0.0033734	-4.4574	-0.0029366	658.8131590514337	33.262	0.12067	33.262	33.238	33.359	0	1155	34	0.92591566	0.020191908	0.92591566	374.74866	0	8.172333						88	6	2	NaN	NaN	NaN	0.23201	1	19043	19043		32.778	18.353	1	8302.3			20966	5215	12088	12441	16625	16625					-0.02548405816196464
QEAIQDLWQW	10	Unmodified	_QEAIQDLWQW_					0	0	0		nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	nc|ENSG00000181163|P06748-2|NPM1	nc|ENSG00000181163|P06748-2|NPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.81712696875	2	658.817127	1315.6197	1.0397	0.00068498	-4.0322	-0.0026565	-2.9925	-0.0019715	658.8150497522541	33.285	0.072395	33.283	33.235	33.307	-0.0024757	1152	40	0.92775106	0.023860574	0.9262317	375.4915	0	9.657166						74	4	3	NaN	NaN	NaN	0.64611	1	18202	18202		11.739	6.0447	1	6407.8			20967	5215	12088	12441	16626	16626					-0.02548405816196464
QEALNLFKSIW	11	Unmodified	_QEALNLFKSIW_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.8666198503001	2	674.86662	1347.71869	0.43909	0.00029633	-2.4765	-0.0016713	-2.0374	-0.001375	674.8664594715076	31.332	0.096552	31.332	31.284	31.38	0	1077	61	0.9735726	0.03660786	0.9735726	393.93942	0	14.812744						123	5	3	NaN	NaN	NaN	0.13233	1	19517	19517		36.622	20.8	1	10400			20968	1010	12089	12442	16627	16627					0.058736171487225874
QEALSACI	8	Unmodified	_QEALSACI_					0	0	0		ENST00000465942.1_1_13:46065604-46085992:+|nuORF;ENSG00000136152|ENST00000349995|COG3	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	834.4025801846	1	834.40258	833.395304	1.776	0.0014819	0.61144	0.00051019	2.3874	0.0019921	834.4032590008375	24.985	0.1448	24.985	24.936	25.081	0	444	46	1.3554435	0.026843548	1.3554435	275.9449	0	5.4648743						98	7	2	NaN	NaN	NaN	0.79379	1	5175	5175		10.052	0	1	6658.8			20969	2995	12090	12443	16628	16628					-0.02805812171038724
QEAQAQAIL	9	Unmodified	_QEAQAQAIL_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5156361075	1	971.515636	970.50836	2.0529	0.0019945	-11.093	-0.010777	-9.0402	-0.0087827	971.504667278883	22.645	0.096504	22.645	22.597	22.694	0	330	46	1.4233059	0.026732326	1.4233059	289.0956	0	5.429718						75	5	2	NaN	NaN	NaN	0.46215	1	7617	7617		11.17	1.5587	1	5180.4			20970	641	12091	12444	16629	16629					0.021925795465108422
QECLLKLDDRQ	11	Unmodified	_QECLLKLDDRQ_					0	0	0			REV__nc|ENSG00000068796|O00139-2|KIF2A	REV__nc|ENSG00000068796|O00139-2|KIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.84810113365	2	680.848101	1359.68165	1.1751	0.00080005	-4.4174	-0.0030076	-3.2423	-0.0022075	680.8442372345155	12.46	0.095965	12.46	12.46	12.556	0	1119	34	0.9479278	0.020165801	0.9479278	383.5284	0	8.159027						99	5	3	NaN	NaN	NaN	0.61402	1	19676	19676		13.101	2.741	1	9167.5	+		20971	8556	12092	12445	16630	16630					0.016195775406231405
QECLLKLDDRQ	11	Unmodified						0	0	0			REV__nc|ENSG00000068796|O00139-2|KIF2A	REV__nc|ENSG00000068796|O00139-2|KIF2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	680.848101	1359.68165	1.1751	0.00080005	-4.4174	-0.0030076	-3.2423	-0.0022075	680.8442372345155	12.46	0.095965	12.46	12.46	12.556	0	1119	34	0.9479278	0.020165801	0.9479278	383.5284		8.159027	0.003516	0.00033825	-0.00015681	NaN	13.101	99	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9167.5	+		20972	8556	12092	12445							0.016195775406231405
QECLLKLDDRQ	11	Unmodified						0	0	0			REV__nc|ENSG00000068796|O00139-2|KIF2A	REV__nc|ENSG00000068796|O00139-2|KIF2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	680.848101	1359.68165	1.2116	0.00082492	-4.8428	-0.0032972	-3.6312	-0.0024723	680.8451659390581	12.462	0.096105	12.453	12.429	12.525	-0.0088415	1116	37	0.94976085	0.021997869	0.9482414	384.27008		8.900269	-0.003516	-0.00024107	0.00015681	NaN	13.101	101	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9843.3	+		20973	8556	12092	12445							0.016195775406231405
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.28292001065	2	591.28292	1180.55129	1.3944	0.00082447	-0.50879	-0.00030084	0.88558	0.00052363	591.2824503106056	24.406	0.096489	24.406	24.381	24.478	0	1227	97	0.88180584	0.05883217	0.88180584	357.31995	0	23.83963						224	5	2	NaN	NaN	NaN	0.012018	1	15839	15839		86.792	49.49	1	140480			20974	3540	12093	12446	16631	16631					-0.031766503960625414
QEDLRTFSW	9	Unmodified	_QEDLRTFSW_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.28292001065	2	591.28292	1180.55129	1.2774	0.0007553	0.38335	0.00022667	1.6607	0.00098197	591.283212358305	24.429	0.16891	24.417	24.368	24.537	-0.012749	1227	103	0.88180584	0.06250924	0.8802864	357.31995	0	25.32959						335	8	2	NaN	NaN	NaN	0.00016172	1	15254	15254		119.15	72.015	1	160160			20975	3540	12093	12446	16632	16632					-0.031766503960625414
QEDQEKRNCL	10	Unmodified	_QEDQEKRNCL_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.7933259089501	2	631.793326	1261.5721	1.554	0.00098178	-6.4851	-0.0040972	-4.9311	-0.0031155	631.7893295547902	20.237	0.16821	20.237	20.141	20.309	0	1128	79	0.9424274	0.04771352	0.9424274	381.6013	0	19.319824						189	8	3	NaN	NaN	NaN	0.69669	1	18024	18024		8.2775	0.68994	1	13350			20976	71	12094	12447	16633	16633					-0.04822428078682606
QEDQEKRNCL	10	Unmodified						0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;C12orf52-GRHL2|1|fusion	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	631.793326	1261.5721	1.4741	0.00093133	-2.5273	-0.0015967	-1.0532	-0.00066539	631.7921448429427	20.285	0.12025	20.271	20.222	20.343	-0.014141	1128	67	0.9424274	0.040364265	0.94090796	381.60126		16.343994	0.016874	0.0026233	-0.00075972	NaN	8.2775	130	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12415			20977	71	12094	12447							-0.04822428078682606
QEEKDLSI	8	Unmodified	_QEEKDLSI_					0	0	0			REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.24547187185004	2	481.245472	960.476391	1.8853	0.0009073	-1.248	-0.00060058	0.63734	0.00030672	481.24478569034306	21.729	0.19257	21.715	21.667	21.86	-0.013897	1362	49	0.79879075	0.029588401	0.7972713	324.5363	0	12.021301						205	9	3	NaN	NaN	NaN	0.26796	1	7197	7197		44.638	9.342	1	28413	+		20978	10204	12095	12448	16634	16634					-0.005428329272717747
QEEKDLSI	8	Unmodified						0	0	0			REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	481.245472	960.476391	1.8138	0.0008729	-2.4691	-0.0011883	-0.6553	-0.00031536	481.2443710273125	21.73	0.16849	21.73	21.705	21.874	0	1362	46	0.79879075	0.027737617	0.79879075	324.53632		11.269348	0.0070108	-0.0005267	0.00075972	NaN	44.638	206	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30062	+		20979	10204	12095	12448							-0.005428329272717747
QEEKDLSI	8	Unmodified						0	0	0			REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	REV__nc|ENSG00000160469|Q8TDC3-2|BRSK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	481.245472	960.476391	1.8853	0.0009073	-1.248	-0.00060058	0.63734	0.00030672	481.24478569034306	21.729	0.19257	21.715	21.667	21.86	-0.013897	1362	49	0.79879075	0.029588401	0.7972713	324.5363		12.021301	-0.0070108	0.00064866	-0.00075972	NaN	44.638	205	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28413	+		20980	10204	12095	12448							-0.005428329272717747
QEELARSFFW	10	Unmodified	_QEELARSFFW_					0	0	0		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.8196696577	2	656.81967	1311.62479	1.5093	0.00099137	6.5388	0.0042948	8.0481	0.0052862	657.3256588163504	28.219	0.19306	28.219	28.122	28.315	0	1116	52	0.94976085	0.031161964	0.94976085	384.41168	0	12.612671						256	9	4	NaN	NaN	NaN	0.69669	1	18978	18978		8.2775	0	1	21678			20981	3073	12096	12449	16635	16635					-0.018561019535809464
QEEQTKYEYN	10	Unmodified	_QEEQTKYEYN_					0	0	0			REV__ENST00000576696.2_1_13:24041407-24041581:+|nuORF	REV__ENST00000576696.2_1_13:24041407-24041581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.2911389732501	2	666.291139	1330.56773	1.6833	0.0011216	-5.1547	-0.0034345	-3.4714	-0.002313	666.789952617242	28.436	0.096558	28.436	28.412	28.508	0	1110	55	0.95342636	0.032986104	0.95342636	385.83807	0	13.34903						128	5	3	NaN	NaN	NaN	0.73801	1	19255	19255		5.4499	1.1398	1	12025	+		20982	12851	12097	12450	16636	16636					-0.08433614020600544
QEFEHVNGRW	10	Unmodified	_QEFEHVNGRW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.5389042123667	3	434.538904	1300.59488	1.6179	0.00070305	-1.4432	-0.00062714	0.17468	7.5905E-05	434.53800959907494	16.566	0.095898	16.566	16.542	16.638	0	1377	22	0.7895419	0.012951255	0.7895419	479.38412	0	7.863556						47	5	2	NaN	NaN	NaN	0.77928	1	18788	18788		0.71611	0.5982	1	2753.8			20983	1821	12098	12451	16637	16637					-0.04339040898912572
QEGESQQAEH	10	Unmodified	_QEGESQQAEH_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.739073613	2	571.739074	1141.46359	2.0226	0.0011564	5.2984	0.0030293	7.321	0.0041857	571.7419655779205	18.94	0.072033	18.94	18.916	18.988	0	1224	31	0.883646	0.018400967	0.883646	358.20718	0	7.459259						61	4	2	NaN	NaN	NaN	0.77024	1	14496	14496		2.8895	0.71314	1	5169.1	+		20984	9345	12099	12452	16638	16638					-0.1014789605749229
QEGESQQAEH	10	Unmodified						0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.739074	1141.46359	2.0226	0.0011564	5.2984	0.0030293	7.321	0.0041857	571.7419655779205	18.94	0.072033	18.94	18.916	18.988	0	1224	31	0.883646	0.018400967	0.883646	358.20718		7.459259	-0.039787	0.0022915	-0.00016028	NaN	2.8895	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5169.1	+		20985	9345	12099	12452							-0.1014789605749229
QEGESQQAEH	10	Unmodified						0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.739074	1141.46359	1.8663	0.0010671	1.5267	0.0008729	3.3931	0.00194	571.7405273617634	19.034	0.071983	19.02	18.996	19.068	-0.014059	1221	43	0.885486	0.025764108	0.88396657	358.9531		10.444122	0.039787	-0.0020214	0.00016028	NaN	2.8895	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3819.7	+		20986	9345	12099	12452							-0.1014789605749229
QEGQESHSL	9	Unmodified	_QEGQESHSL_					0	0	0			REV__ENST00000467590.1_1_X:13681667-13684537:+|nuORF	REV__ENST00000467590.1_1_X:13681667-13684537:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.72797761044995	2	507.727978	1013.4414	1.5672	0.00079573	6.9008	0.0035037	8.468	0.0042995	507.73115370683763	18.722	0.16797	18.708	18.588	18.756	-0.014059	1311	64	0.83019954	0.038761258	0.8286801	337.04828	0	15.736481						198	8	2	NaN	NaN	NaN	0.2961	1	8932	8932		19.164	0.045272	1	25682	+		20987	12310	12100	12453	16639	16639					-0.06478075735242328
QEGSKYKGS	9	Unmodified	_QEGSKYKGS_					0	0	0			REV__ENST00000553038.5_1_12:100606046-100635559:+|nuORF	REV__ENST00000553038.5_1_12:100606046-100635559:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.2432635339	2	492.243264	982.471974	1.4919	0.00073439	0.027289	1.3433E-05	1.5192	0.00074782	492.2433714083258	29.039	0.21721	29.039	28.967	29.184	0	1338	49	0.81357855	0.029569209	0.81357855	330.43988	0	12.009705						160	10	3	NaN	NaN	NaN	0.6532	1	7961	7961		3.2116	0.42642	1	17338	+		20988	8122	12101	12454	16640	16640					-0.019962973501833403
QEGSKYKGS	9	Unmodified						0	0	0			REV__ENST00000553038.5_1_12:100606046-100635559:+|nuORF	REV__ENST00000553038.5_1_12:100606046-100635559:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.243264	982.471974	1.4919	0.00073439	0.027289	1.3433E-05	1.5192	0.00074782	492.2433714083258	29.039	0.21721	29.039	28.967	29.184	0	1338	49	0.81357855	0.029569209	0.81357855	330.43988		12.009705	-0.0077898	-0.0010294	0.00075972	NaN	3.2116	160	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17338	+		20989	8122	12101	12454							-0.019962973501833403
QEHAPNVAA	9	Unmodified	_QEHAPNVAA_					0	0	0		ENST00000448629.5_1_1:1336214-1336388:+|nuORF	ENST00000448629.5_1_1:1336214-1336388:+|nuORF	ENST00000448629.5_1_1:1336214-1336388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.73032333414994	2	468.730323	935.446094	0.59639	0.00027955	-5.9769	-0.0028016	-5.3805	-0.002522	468.72800117537645	31.235	0.19308	31.235	31.187	31.38	0	1368	70	0.7950918	0.042531013	0.7950918	323.15543	0	17.286224						436	9	6	NaN	NaN	NaN	0.31737	1	6725	6725		17.799	1.3823	1	109570			20990	7032	12102	12455	16641	16641					-0.02421146801816576
QEKIIPGY	8	Unmodified	_QEKIIPGY_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.5196588529001	1	947.519659	946.512382	1.1879	0.0011255	-8.7424	-0.0082836	-7.5545	-0.0071581	947.511269882294	32.103	0.048283	32.099	32.075	32.123	-0.0037575	258	61	1.4660252	0.035542846	1.4645058	297.87823	0	7.221863						75	3	2	NaN	NaN	NaN	0.47456	1	6871	6871		32.453	10.618	1	5000.5	+		20991	9569	12103	12456	16642	16642					0.03698669040238656
QEKIIPGY	8	Unmodified						0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	947.519659	946.512382	1.1879	0.0011255	-8.7424	-0.0082836	-7.5545	-0.0071581	947.511269882294	32.103	0.048283	32.099	32.075	32.123	-0.0037575	258	61	1.4660252	0.035542846	1.4645058	297.87823		7.221863	0.069988	0.0019174	0.0010182	NaN	32.453	75	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5000.5	+		20992	9569	12103	12456							0.03698669040238656
QEKSRGNHLRF	11	Unmodified	_QEKSRGNHLRF_					0	0	0			REV__nc|ENSG00000003402|O15519-12|CFLAR	REV__nc|ENSG00000003402|O15519-12|CFLAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.36564132035	2	686.365641	1370.71673	2.1568	0.0014803	-10.306	-0.007074	-8.1496	-0.0055936	686.3580716050429	25.057	0.24128	25.057	24.985	25.226	0	1050	91	0.9900381	0.05489403	0.9900381	400.5337	0	22.20813						482	11	4	NaN	NaN	NaN	0.71279	1	19806	19806		6.6174	0.18748	1	79570	+		20993	8350	12104	12457	16643	16643					0.04620001183457134
QEKSRGNHLRF	11	Unmodified	_QEKSRGNHLRF_					0	0	0			REV__nc|ENSG00000003402|O15519-12|CFLAR	REV__nc|ENSG00000003402|O15519-12|CFLAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.91285303576666	3	457.912853	1370.71673	1.3554	0.00062066	-7.953	-0.0036418	-6.5976	-0.0030211	458.2433983644683	25.25	0.26538	25.238	25.093	25.358	-0.012011	1371	37	0.79324204	0.022198498	0.7917226	481.3721	0	13.470978						192	12	2	NaN	NaN	NaN	0.62211	1	18876	18876		6.3563	0.65913	1	40765	+		20994	8350	12104	12457	16644	16644					0.04620001183457134
QELEALAVI	9	Unmodified	_QELEALAVI_					0	0	0			REV__ENSG00000138136|ENST00000370193|LBX1	REV__ENSG00000138136|ENST00000370193|LBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5564382896999	1	985.556438	984.549162	2.2537	0.0022211	-3.2214	-0.0031749	-0.9677	-0.00095373	985.552405524225	26.384	0.07238	26.384	26.36	26.432	0	267	46	1.4606913	0.02667272	1.4606913	296.6299	0	5.416565						78	4	2	NaN	NaN	NaN	0.19268	1	8042	8042		25.801	5.2876	1	9002.9	+		20995	9717	12105	12458	16645	16645					0.05626920866131968
QELEAPGGI	9	Unmodified	_QELEAPGGI_					0	0	0		ENST00000470452.5_1_2:237994547-238002319:+|nuORF;ENSG00000198612|ENST00000354371|COPS8	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.4625379045	1	913.462538	912.455261	2.2089	0.0020178	-1.1425	-0.0010436	1.0664	0.00097411	913.4611706284355	26.143	0.12069	26.143	26.094	26.215	0	372	70	1.3983358	0.041059256	1.3983358	284.2766	0	8.3471985						141	6	2	NaN	NaN	NaN	0.062072	1	6276	6276		41.785	11.174	1	14840			20996	5787	12106	12459	16646	16646					-0.004467982361461509
QELEAPGGI	9	Unmodified						0	0	0		ENST00000470452.5_1_2:237994547-238002319:+|nuORF;ENSG00000198612|ENST00000354371|COPS8	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	913.462538	912.455261	2.1673	0.0019797	-0.69989	-0.00063933	1.4674	0.0013404	913.461416159962	26.143	0.14481	26.131	26.083	26.228	-0.011137	372	49	1.3983358	0.028558373	1.3968164	284.2766		5.8058167	-0.0056852	0.00018963	-0.00075972	NaN	41.785	133	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14018			20997	5787	12106	12459							-0.004467982361461509
QELERIRKAE	10	Unmodified	_QELERIRKAE_					0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.356950621	2	636.356951	1270.69935	1.7506	0.001114	-5.617	-0.0035744	-3.8664	-0.0024604	636.3528431558399	20.117	0.2643	20.117	20.021	20.285	0	1098	43	0.960755	0.025644839	0.960755	388.99213	0	10.383118						230	12	3	NaN	NaN	NaN	0.75017	1	18253	18253		1.5054	0	1	24674	+		20998	10741	12107	12460	16647	16647					0.07482660857795054
QELERIRKAE	10	Unmodified						0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	636.356951	1270.69935	1.7506	0.001114	-5.617	-0.0035744	-3.8664	-0.0024604	636.3528431558399	20.117	0.2643	20.117	20.021	20.285	0	1098	43	0.960755	0.025644839	0.960755	388.99213		10.383118	0	0	0	NaN	1.5054	230	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24674	+		20999	10741	12107	12460							0.07482660857795054
QELKKLLEKI	10	Unmodified	_QELKKLLEKI_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1241.7827498314	1	1241.78275	1240.77547	1.7593	0.0021847	-0.41619	-0.00051681	1.3431	0.0016678	1241.782183074561	39.911	0.096252	39.911	39.887	39.983	0	645	100	1.2351195	0.059479594	1.2351195	250.10568	0	12.044312						223	5	2	NaN	NaN	NaN	0.77928	1	17551	17551		0.69115	0	1	19513	+		21000	11175	12108	12461	16648	16648					0.1647166470522734
QELKKLLEKI	10	Unmodified						0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1241.78275	1240.77547	1.7593	0.0021847	-0.41619	-0.00051681	1.3431	0.0016678	1241.782183074561	39.911	0.096252	39.911	39.887	39.983	0	645	100	1.2351195	0.059479594	1.2351195	250.10568		12.044312	0.14299	0.001271	-0.0073468	NaN	0.69115	223	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19513	+		21001	11175	12108	12461							0.1647166470522734
QELLEDGQMDQ	11	Unmodified	_QELLEDGQMDQ_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.2849993503501	2	653.284999	1304.55545	0.98803	0.00064547	-7.6334	-0.0049868	-6.6453	-0.0043413	653.2789724358047	32.876	0.19307	32.876	32.804	32.997	0	1119	55	0.9479278	0.032996833	0.9479278	383.6915	0	13.356079						303	9	4	NaN	NaN	NaN	0.73057	1	18842	18842		5.4499	0.72086	1	51245			21002	1327	12109	12462	16649	16649					-0.08464973755303618
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.2965587021502	2	635.296559	1268.57856	1.9527	0.0012406	-0.49694	-0.0003157	1.4558	0.00092486	635.2963696959888	18.988	0.14394	18.988	18.94	19.084	0	1167	58	0.91857195	0.034876943	0.91857195	371.91962	0	14.121277						203	7	4	NaN	NaN	NaN	0.31689	1	18200	18200		27.046	7.71	1	30021			21003	477	12110	12463	16650	16650					-0.04498166855637464
QELNDRFANY	10	Unmodified	_QELNDRFANY_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.2965587021502	2	635.296559	1268.57856	1.7123	0.0010878	-1.7597	-0.0011179	-0.047339	-3.0075E-05	635.2959020450901	19.01	0.1922	18.996	18.972	19.164	-0.014059	1164	52	0.9204082	0.031215787	0.91888875	372.6631	0	12.638947						234	9	4	NaN	NaN	NaN	0.13684	1	17389	17389		40.957	20.508	1	31035			21004	477	12110	12463	16651	16651					-0.04498166855637464
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3356838626501	2	646.335684	1290.65681	1.984	0.0012823	-1.2981	-0.00083901	0.6859	0.00044332	646.3349245441233	19.588	0.12003	19.588	19.564	19.684	0	1143	46	0.9332562	0.027522564	0.9332562	377.7955	0	11.141541						188	6	4	NaN	NaN	NaN	1.0378E-05	1	18604	18604		117.26	61.671	1	28100			21005	5275	12111	12464	16652	16652					0.023112657295769168
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.3356838626501	2	646.335684	1290.65681	1.7577	0.001136	-1.8069	-0.0011679	-0.049249	-3.1831E-05	646.334163076983	19.587	0.14442	19.573	19.549	19.693	-0.014141	1146	40	0.93142134	0.023852885	0.9299019	377.05273	0	9.655975						154	7	4	NaN	NaN	NaN	0.011513	1	17773	17773		69.32	31.189	1	24135			21006	5275	12111	12464	16653	16653					0.023112657295769168
QELSEEDKQ	9	Unmodified	_QELSEEDKQ_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.25402518545	2	553.254025	1104.4935	1.4677	0.00081203	-0.77257	-0.00042743	0.69516	0.0003846	553.2520946499403	19.468	0.07196	19.468	19.444	19.516	0	1272	37	0.854179	0.022121787	0.854179	346.40036	0	8.971161						53	4	2	NaN	NaN	NaN	0.59509	1	13020	13020		5.6942	0.2283	1	3989			21007	4983	12112	12465	16654	16654					-0.05456957112141936
QELYYWYLQ	9	Unmodified	_QELYYWYLQ_					0	0	0			REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF	REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3111461338501	2	653.311146	1304.60774	1.5511	0.0010133	2.1941	0.0014334	3.7452	0.0024468	653.3116386415195	19.588	0.096004	19.588	19.54	19.636	0	1125	76	0.9442611	0.045861065	0.9442611	382.20712	0	18.56311						179	5	3	NaN	NaN	NaN	0.16171	1	18851	18851		27.789	4.6712	1	34023	+		21008	9689	12113	12466	16655	16655					-0.03238022559366982
QELYYWYLQ	9	Unmodified						0	0	0			REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF	REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	653.311146	1304.60774	1.5511	0.0010133	2.1941	0.0014334	3.7452	0.0024468	653.3116386415195	19.588	0.096004	19.588	19.54	19.636	0	1125	76	0.9442611	0.045861065	0.9442611	382.20712		18.56311	-0.0042961	-0.00098714	0.00075972	NaN	27.789	179	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34023	+		21009	9689	12113	12466							-0.03238022559366982
QENEMQAYIP	10	Unmodified	_QENEMQAYIP_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.7740705233	2	611.774071	1221.53359	1.082	0.00066194	-0.27851	-0.00017039	0.80349	0.00049155	611.7744708470577	29.691	0.048273	29.691	29.691	29.739	0	1116	43	0.94976085	0.025661409	0.94976085	384.7071	0	10.394348						60	3	2	NaN	NaN	NaN	0.62092	1	17012	17012		13.463	0	1	6671.4	+		21010	8662	12114	12467	16656	16656					-0.06831733713215726
QEPYIYDYPFY	11	Unmodified	_QEPYIYDYPFY_					0	0	0			REV__ENSG00000104884|ENST00000391945|ERCC2	REV__ENSG00000104884|ENST00000391945|ERCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.33227550645	2	749.332276	1496.65	1.0251	0.00076812	-9.7561	-0.0073106	-8.7311	-0.0065425	749.3242143164642	30.728	0.072401	30.728	30.704	30.777	0	1014	58	1.0119673	0.034711897	1.0119673	409.0613	0	14.031403						97	4	2	NaN	NaN	NaN	0.73455	1	20570	20570		5.1889	1.2608	1	9892.6	+		21011	8940	12115	12468	16657	16657					-0.07846091941678424
QEQAAEPAQ	9	Unmodified	_QEQAAEPAQ_					0	0	0		nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.22507078074995	2	486.225071	970.435589	1.8954	0.00092157	-9.2117	-0.004479	-7.3163	-0.0035574	486.2205165610795	21.97	0.12043	21.97	21.946	22.067	0	1341	37	0.8117308	0.022172093	0.8117308	329.7459	0	9.006866						94	6	2	NaN	NaN	NaN	0.59509	1	7607	7607		5.6942	0	1	8359.4			21012	2382	12116	12469	16658	16658					-0.050811742469136334
QERPRSDL	8	Unmodified	_QERPRSDL_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.76215477880004	2	500.762155	999.509757	1.7335	0.00086805	-6.8701	-0.0034403	-5.1366	-0.0025722	500.75861528641417	23.561	0.096426	23.548	23.5	23.596	-0.013048	1287	46	0.8449601	0.027671635	0.84344065	343.10498	0	11.236359						83	5	2	NaN	NaN	NaN	0.76406	1	8386	8386		14.042	0	1	9702.2			21013	1588	12117	12470	16659	16659					0.009982136352846283
QESFSDNSST	10	Unmodified	_QESFSDNSST_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.4330882696	1	1101.43309	1100.42581	0.92342	0.0010171	2.4472	0.0026954	3.3706	0.0037125	1101.434905677788	33.359	0.16894	33.359	33.287	33.456	0	135	52	1.5387528	0.030088305	1.5387528	312.0276	0	6.101288						250	8	3	NaN	NaN	NaN	0.6772	1	12842	12842		9.6116	2.6273	1	21393	+		21014	10869	12118	12471	16660	16660					-0.12038407042928156
QESGNGVI	8	Unmodified	_QESGNGVI_					0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3893729614002	1	803.389373	802.382096	2.0743	0.0016665	5.0553	0.0040614	7.1297	0.0057279	803.3938590293105	23.61	0.14458	23.61	23.562	23.706	0	477	61	1.3357477	0.03584671	1.3357477	272.1056	0	7.3023376						139	7	2	NaN	NaN	NaN	0.57691	1	4776	4776		26.732	1.7706	1	13954	+		21015	8407	12119	12472	16661	16661					-0.026999269587349772
QESGNGVI	8	Unmodified	_QESGNGVI_					0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3893729614002	1	803.389373	802.382096	2.0429	0.0016413	6.8776	0.0055254	8.9205	0.0071667	803.3946376728974	23.609	0.072374	23.596	23.548	23.621	-0.013048	477	73	1.3357477	0.043011427	1.3342283	272.1056	0	8.761871						106	4	2	NaN	NaN	NaN	0.72013	1	4685	4685		17.799	0	1	12495	+		21016	8407	12119	12472	16662	16662					-0.026999269587349772
QESGNGVI	8	Unmodified						0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	803.389373	802.382096	2.0743	0.0016665	5.0553	0.0040614	7.1297	0.0057279	803.3938590293105	23.61	0.14458	23.61	23.562	23.706	0	477	61	1.3357477	0.03584671	1.3357477	272.1056		7.3023376	0.0066565	-0.00086823	0.00075972	NaN	26.732	139	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13954	+		21017	8407	12119	12472							-0.026999269587349772
QESGNGVI	8	Unmodified						0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	803.389373	802.382096	2.0429	0.0016413	6.8776	0.0055254	8.9205	0.0071667	803.3946376728974	23.609	0.072374	23.596	23.548	23.621	-0.013048	477	73	1.3357477	0.043011427	1.3342283	272.1056		8.761871	-0.0066565	0.00059577	-0.00075972	NaN	26.732	106	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12495	+		21018	8407	12119	12472							-0.026999269587349772
QESKEECI	8	Unmodified	_QESKEECI_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.4244378387001	1	965.424438	964.417161	1.3851	0.0013372	-2.9196	-0.0028187	-1.5345	-0.0014815	965.4215420962714	20.309	0.14453	20.295	20.271	20.415	-0.014141	354	58	1.4090419	0.033893347	1.4075224	286.22363	0	6.884857						165	7	2	NaN	NaN	NaN	0.26796	1	7304	7304		44.638	9.342	1	15119			21019	2322	12120	12473	16663	16663					-0.06647052213111238
QETGYFLLF	9	Unmodified	_QETGYFLLF_					0	0	0		ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1117.5564382896998	1	1117.55644	1116.54916	1.7502	0.0019559	0.40931	0.00045742	2.1595	0.0024133	1117.557082649478	32.78	0.096512	32.78	32.732	32.828	0	66	82	1.579413	0.047691107	1.579413	320.21536	0	9.669067						282	5	4	NaN	NaN	NaN	0.042816	1	13529	13529		49.961	16.263	1	62837			21020	6507	12121	12474	16664	16664					-0.004450791338740601
QETGYFLLF	9	Unmodified	_QETGYFLLF_					0	0	0		ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	ENST00000331920.10_1_9:98231408-98238427:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1117.5564382896998	1	1117.55644	1116.54916	1.1582	0.0012943	1.1099	0.0012404	2.2681	0.0025347	1117.5581225844792	32.779	0.28955	32.776	32.727	33.017	-0.0031052	66	79	1.579413	0.0459224	1.5778936	320.21536	0	9.310455						390	13	4	NaN	NaN	NaN	0.042816	1	13135	13135		49.961	14.665	1	63094			21021	6507	12121	12474	16665	16665					-0.004450791338740601
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		TPT1-KRT17|1|fusion;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2800429707002	2	602.280043	1202.54553	1.4803	0.00089154	-1.4077	-0.00084785	0.072536	4.3687E-05	602.2793049536216	16.062	0.21596	16.062	16.038	16.254	0	1194	40	0.902037	0.023896694	0.902037	365.4407	0	9.681244						209	10	3	NaN	NaN	NaN	0.21887	1	16541	16541		33.907	10.822	1	30040			21022	13722	12122	12475	16666	16666					-0.04763793698361951
QETSFTKEAY	10	Unmodified	_QETSFTKEAY_					0	0	0		TPT1-KRT17|1|fusion;ENST00000533567.5_1_13:45912892-45914385:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	TPT1-KRT17|1|fusion	TPT1-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.2800429707002	2	602.280043	1202.54553	1.6549	0.0009967	-1.31	-0.00078899	0.34486	0.0002077	602.2793368451378	16.083	0.14388	16.07	16.047	16.19	-0.012611	1197	43	0.9001988	0.025739074	0.8986794	364.69598	0	10.427643						226	7	4	NaN	NaN	NaN	0.075094	1	15889	15889		49.394	26.06	1	32393			21023	13722	12122	12475	16667	16667					-0.04763793698361951
QEVGYSIRF	9	Unmodified	_QEVGYSIRF_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7825558699001	2	549.782556	1097.55056	1.2368	0.00067997	-9.747	-0.0053587	-8.5102	-0.0046788	549.7768299192761	22.524	0.096516	22.511	22.486	22.583	-0.013733	1236	73	0.876284	0.044190943	0.8747646	355.3925	0	17.922424						174	5	3	NaN	NaN	NaN	0.3106	1	12409	12409		18.233	7.0632	1	24663			21024	1726	12123	12476	16668	16668					0.005685549549070856
QEVGYSIRF	9	Unmodified						0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.782556	1097.55056	1.4527	0.00079868	-8.7473	-0.0048091	-7.2946	-0.0040104	549.7783905563978	22.501	0.072268	22.501	22.477	22.549	0	1236	70	0.876284	0.042338252	0.876284	355.3925		17.17102	-0.0048896	0.00065876	0.00075972	NaN	18.233	187	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27535			21025	1726	12123	12476							0.005685549549070856
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000067066|P23497-7|SP100	nc|ENSG00000185404|Q9H930-1|SP140L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8218779956501	2	645.821878	1289.6292	1.5426	0.00099624	-2.4331	-0.0015713	-0.89047	-0.00057508	645.8195089484069	26.94	0.096498	26.94	26.915	27.012	0	1044	67	0.99369496	0.04020363	0.99369496	402.26538	0	16.275146						161	5	3	NaN	NaN	NaN	0.025854	1	18588	18588		61.271	32.376	1	19152			21026	5412;712	12124	12477	16669	16669					-0.004026375306693808
QEYPDLIHIY	10	Unmodified	_QEYPDLIHIY_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000067066|P23497-7|SP100	nc|ENSG00000185404|Q9H930-1|SP140L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8218779956501	2	645.821878	1289.6292	1.4914	0.00096319	-2.5266	-0.0016317	-1.0352	-0.00066852	645.8199732782329	26.963	0.096565	26.952	26.928	27.025	-0.010645	1044	61	0.99369496	0.036548674	0.9921755	402.26538	0	14.795563						148	5	3	NaN	NaN	NaN	0.0032815	1	17760	17760		81.699	51.664	1	16625			21027	5412;712	12124	12477	16670	16670					-0.004026375306693808
QEYSTEHHLVC	11	Unmodified	_QEYSTEHHLVC_					0	0	0		nc|ENSG00000005981|Q9Y574-2|ASB4;ENSG00000005981|ENST00000325885|ASB4	nc|ENSG00000005981|Q9Y574-2|ASB4	nc|ENSG00000005981|Q9Y574-2|ASB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.2957014224	2	673.295701	1344.57685	0.68607	0.00046193	-4.8273	-0.0032502	-4.1412	-0.0027883	673.2929672761645	31.331	0.072361	31.326	31.326	31.398	-0.0050716	1080	55	0.9717421	0.03296125	0.97022265	393.20807	0	13.337524						114	4	3	NaN	NaN	NaN	0.74155	1	18611	18611		4.7291	0	1	9567.4			21028	337	12125	12478	16671	16671					-0.08165543935933783
QFEDYNMIKM	10	Unmodified	_QFEDYNMIKM_					0	0	0			REV__APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	REV__APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.79394868565	2	659.793949	1317.57334	1.1327	0.00074733	1.2865	0.00084885	2.4192	0.0015962	659.7965124545838	30.583	0.14478	30.577	30.553	30.698	-0.0057545	1122	52	0.9460945	0.031165361	0.9445751	382.90976	0	12.613434						179	7	3	NaN	NaN	NaN	0.64611	1	18224	18224		11.739	1.3787	1	19768	+		21029	8136	12126	12479	16672	16672					-0.07273930034170917
QFGDNVYPD	9	Unmodified	_QFGDNVYPD_					0	0	0		tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7274462942	2	527.727446	1053.44034	1.9697	0.0010395	-7.1022	-0.003748	-5.1325	-0.0027086	527.7238971721357	13.925	0.28812	13.925	13.829	14.117	0	1287	58	0.8449601	0.035054564	0.8449601	342.86636	0	14.224396						275	13	2	NaN	NaN	NaN	0.45297	1	10774	10774		11.548	3.2582	1	28484			21030	13838	12127	12480	16673	16673					-0.08424290104130705
QFIDFMTDTIE	11	Unmodified	_QFIDFMTDTIE_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.8760827017666	3	453.876083	1358.60642	1.2045	0.0005467	-0.69023	-0.00031328	0.51427	0.00023342	453.87576195269367	16.59	0.095917	16.59	16.566	16.662	0	1485	34	0.72280174	0.020431578	0.72280174	438.66498	0	12.399811						103	5	3	NaN	NaN	NaN	0.73455	1	19652	19652		3.5945	2.069	1	9703.2	+		21031	13330	12128	12481	16674	16674					-0.05854024710470185
QFIDFMTDTIE	11	Unmodified	_QFIDFMTDTIE_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.8760827017666	3	453.876083	1358.60642	1.2741	0.00057827	-0.62372	-0.00028309	0.65035	0.00029518	453.87568147075064	16.518	0.047926	16.518	16.494	16.542	0	1488	31	0.7209441	0.018575132	0.7209441	437.5376	0	11.273163						43	3	2	NaN	NaN	NaN	0.73455	1	19653	19653		3.5945	2.069	1	4822.7	+		21032	13330	12128	12481	16675	16675					-0.05854024710470185
QFKFFKRFY	9	Unmodified	_QFKFFKRFY_					0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8558581987502	2	655.855858	1309.69716	0.53625	0.0003517	7.6626	0.0050256	8.1989	0.0053773	655.8608457625925	42.912	0.14391	42.922	42.874	43.018	0.010418	1224	31	0.883646	0.018400967	0.88212657	357.65747	0	7.447815						90	7	3	NaN	NaN	NaN	0.68801	1	18105	18105		0.23014	0.037651	1	5679.7	+		21033	12546	12129	12482	16676	16676					0.054702769106825144
QFKFFKRFY	9	Unmodified						0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	655.855858	1309.69716	0.53625	0.0003517	7.6626	0.0050256	8.1989	0.0053773	655.8608457625925	42.912	0.14391	42.922	42.874	43.018	0.010418	1224	31	0.883646	0.018400967	0.88212657	357.65747		7.447815	-0.0075801	0.00041365	0.00016038	NaN	0.23014	90	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5679.7	+		21034	12546	12129	12482							0.054702769106825144
QFLFGFVWS	9	Unmodified	_QFLFGFVWS_					0	0	0			REV__ENSG00000258083|ENST00000641559|OR9A4	REV__ENSG00000258083|ENST00000641559|OR9A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.78710993155	2	565.78711	1129.55967	1.023	0.00057882	-7.5551	-0.0042746	-6.532	-0.0036957	565.782212855821	28.966	0.16893	28.958	28.886	29.055	-0.0077229	1233	40	0.87812483	0.02393806	0.8766054	356.0139	0	9.705109						123	8	2	NaN	NaN	NaN	0.45297	1	13616	13616		11.548	0.37812	1	29517	+		21035	11386	12130	12483	16677	16677					6.948311215637659E-05
QFLGQMCLEF	10	Unmodified	_QFLGQMCLEF_					0	0	0			REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.28047716965	2	608.280477	1214.5464	1.4666	0.00089213	-3.2898	-0.0020012	-1.8232	-0.001109	608.2775819527984	22.453	0.14447	22.453	22.405	22.549	0	1179	76	0.9112251	0.045915484	0.9112251	369.12167	0	18.599579						314	7	3	NaN	NaN	NaN	0.5626	1	16832	16832		16.858	0	1	85325	+		21036	12757	12131	12484	16678	16678					-0.05228993854689179
QFLGVFLM	8	Unmodified	_QFLGVFLM_					0	0	0			REV__ENSG00000198838|ENST00000634891|RYR3	REV__ENSG00000198838|ENST00000634891|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.7595065850501	2	477.759507	953.50446	1.4714	0.00070298	-7.0358	-0.0033614	-5.5644	-0.0026585	477.756579599655	24.092	0.07242	24.079	24.055	24.127	-0.012749	1314	58	0.8283535	0.035084903	0.8268341	336.58194	0	14.25592						97	4	3	NaN	NaN	NaN	0.81807	1	7026	7026		6.794	0.70367	1	8353.5	+		21037	11196	12132	12485	16679	16679					0.025848185191193807
QFNRELKLLE	10	Unmodified	_QFNRELKLLE_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.36424433685	2	645.364244	1288.71394	1.0443	0.00067396	-2.8429	-0.0018347	-1.7986	-0.0011607	645.3624389914224	39.358	0.024036	39.358	39.358	39.382	0	1215	70	0.8891654	0.042338252	0.8891654	359.95267	0	17.139374						70	2	2	NaN	NaN	NaN	0.76892	1	18576	18576		3.2116	1.287	1	6518.2	+		21038	8726	12133	12486	16680	16680					0.08112733005918926
QFNRELKLLE	10	Unmodified						0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	645.364244	1288.71394	1.0443	0.00067396	-2.8429	-0.0018347	-1.7986	-0.0011607	645.3624389914224	39.358	0.024036	39.358	39.358	39.382	0	1215	70	0.8891654	0.042338252	0.8891654	359.95267		17.139374	0	0	0	NaN	3.2116	70	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6518.2	+		21039	8726	12133	12486							0.08112733005918926
QFNVEGTNSPL	11	Unmodified	_QFNVEGTNSPL_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.29348469695	2	603.293485	1204.57242	1.4259	0.00086022	5.4723	0.0033014	6.8982	0.0041616	603.2967455629662	23.778	0.048222	23.778	23.754	23.803	0	1173	61	0.91489893	0.036734402	0.91489893	370.64432	0	14.881866						137	3	3	NaN	NaN	NaN	0.48069	1	16603	16603		19.164	0	1	23282	+		21040	10248	12134	12487	16681	16681					-0.021686850871901697
QFNVEGTNSPL	11	Unmodified						0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	603.293485	1204.57242	1.4259	0.00086022	5.4723	0.0033014	6.8982	0.0041616	603.2967455629662	23.778	0.048222	23.778	23.754	23.803	0	1173	61	0.91489893	0.036734402	0.91489893	370.64432		14.881866	-0.077668	-0.00073481	0.0025966	NaN	19.164	137	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23282	+		21041	10248	12134	12487							-0.021686850871901697
QFPELMNMLW	10	Oxidation (M)	_QFPELMNM(Oxidation (M))LW_		QFPELM(0.005)NM(0.995)LW		QFPELM(-23)NM(23)LW	0	0	1		CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.80685909565	2	662.806859	1323.59917	1.6574	0.0010986	-3.3486	-0.0022195	-1.6912	-0.0011209	663.305684774154	34.757	0.1687	34.756	34.636	34.804	-0.0006485	1116	52	0.94976085	0.031161964	0.9482414	384.3755	0	12.611481						219	8	3	NaN	NaN	NaN	0.013678	1	18293	18293		66.544	44.772	2	22542			21042	169	12135	12488	16682	16682		12;13			-0.04969035791873466
QFPELMNMLW	10	2 Oxidation (M)	_QFPELM(Oxidation (M))NM(Oxidation (M))LW_		QFPELM(1)NM(1)LW		QFPELM(41)NM(41)LW	0	0	2		CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant;CLINT1|p.P474Yfs*4|1|0.41|ENSG00000113282|chr5:157789473-157789477|GGCAA/-|frameshift_variant;nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.8043164067001	2	670.804316	1339.59408	0.99239	0.0006657	-5.3979	-0.003621	-4.4056	-0.0029553	671.3015181154103	31.162	0.26547	31.157	31.012	31.277	-0.0050716	1113	85	0.9515937	0.051306248	0.95007426	385.06973	0	20.761444						433	12	4	NaN	NaN	NaN	0.13684	1	18535	18535		40.957	19.106	1	47572			21043	169	12135	12489	16683	16683		12;13			-0.06213339654482297
QFQFFASCEII	11	Unmodified	_QFQFFASCEII_					0	0	0			REV__ENST00000476467.1_1_1:151373984-151374107:+|nuORF	REV__ENST00000476467.1_1_1:151373984-151374107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.8182810617001	2	666.818281	1331.62201	1.5075	0.0010052	-2.7285	-0.0018194	-1.221	-0.00081416	666.8147098728654	26.746	0.072401	26.746	26.674	26.746	0	1122	40	0.9460945	0.023832321	0.9460945	382.86786	0	9.644531						52	4	2	NaN	NaN	NaN	0.77544	1	19278	19278		1.04	0.34889	1	7798.5	+		21044	12341	12136	12490	16684	16684					-0.030536934027395546
QFQFFASCEII	11	Unmodified						0	0	0			REV__ENST00000476467.1_1_1:151373984-151374107:+|nuORF	REV__ENST00000476467.1_1_1:151373984-151374107:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.818281	1331.62201	1.5075	0.0010052	-2.7285	-0.0018194	-1.221	-0.00081416	666.8147098728654	26.746	0.072401	26.746	26.674	26.746	0	1122	40	0.9460945	0.023832321	0.9460945	382.86786		9.644531	0	0	0	NaN	1.04	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7798.5	+		21045	12341	12136	12490							-0.030536934027395546
QFQNPIRFW	9	Unmodified	_QFQNPIRFW_					0	0	0			REV__ENSG00000013583|ENST00000014930|HEBP1	REV__ENSG00000013583|ENST00000014930|HEBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3196398679501	2	618.31964	1234.62473	0.60903	0.00037657	1.0686	0.00066075	1.6777	0.0010373	618.3206455900041	28.17	0.14485	28.161	28.088	28.233	-0.0089779	987	109	1.0283957	0.06563926	1.0268762	416.50934	0	26.584442						359	7	3	NaN	NaN	NaN	0.68801	1	16667	16667		0.23014	0	1	33583	+		21046	8417	12137	12491	16685	16685					0.01679942837085946
QFRMQVGVM	9	Unmodified	_QFRMQVGVM_					0	0	0			REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	REV__nc|ENSG00000162777|Q9H6A0-2|DENND2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2755291775002	2	548.275529	1094.53651	1.167	0.00063982	-3.4483	-0.0018906	-2.2813	-0.0012508	548.2736912631548	28.073	0.12065	28.064	27.992	28.112	-0.0089779	1224	73	0.883646	0.044176638	0.88212657	358.39047	0	17.917206						218	6	3	NaN	NaN	NaN	0.27442	1	12277	12277		20.555	1.3919	1	71615	+		21047	10255	12138	12492	16686	16686					-0.006981370693665667
QFRMYHRMQ	9	Unmodified	_QFRMYHRMQ_					0	0	0			REV__ENSG00000102409|ENST00000372695|BEX4	REV__ENSG00000102409|ENST00000372695|BEX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8080591139001	2	648.808059	1295.60157	1.2748	0.00082709	-6.2717	-0.0040691	-4.9969	-0.003242	649.3047549505549	28.17	0.096571	28.161	28.137	28.233	-0.0089779	1107	64	0.9552588	0.03846103	0.9537394	386.68686	0	15.568939						91	5	3	NaN	NaN	NaN	0.66529	1	17857	17857		2.1763	0.67093	1	7423.4	+		21048	8881	12139	12493	16687	16687					-0.03441142543533715
QFVPPLPEW	9	Unmodified	_QFVPPLPEW_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.7923922747001	2	556.792392	1111.57023	0.95861	0.00053375	-3.5029	-0.0019504	-2.5442	-0.0014166	556.7902340722696	32.876	0.24132	32.876	32.707	32.949	0	1251	88	0.8670771	0.05337721	0.8670771	351.60342	0	21.644684						303	11	3	NaN	NaN	NaN	0.49672	1	13345	13345		9.746	2.0634	1	27800			21049	306	12140	12494	16688	16688					0.01890930965669213
QFVPPLPEW	9	Unmodified						0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.792392	1111.57023	1.0089	0.00056176	-3.999	-0.0022266	-2.9901	-0.0016649	556.7900394930283	32.851	0.26529	32.848	32.776	33.041	-0.0031052	1251	64	0.8670771	0.03866917	0.8655577	351.60342		15.680511	-0.014135	-0.00029895	-0.00075972	NaN	9.746	299	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29933			21050	306	12140	12494							0.01890930965669213
QFYLISFIL	9	Unmodified	_QFYLISFIL_					0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3260679165501	2	572.326068	1142.63758	1.1494	0.00065784	-0.39608	-0.00022669	0.75333	0.00043115	572.3257048773175	36.541	0.14465	36.543	36.494	36.639	0.0016785	1149	37	0.92958635	0.022021592	0.9280669	376.82562	0	8.92688						151	7	3	NaN	NaN	NaN	0.074859	1	14080	14080		39.459	3.4224	1	15141	+		21051	11257	12141	12495	16689	16689					0.0719696117660078
QFYLISFIL	9	Unmodified						0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.326068	1142.63758	1.1494	0.00065784	-0.39608	-0.00022669	0.75333	0.00043115	572.3257048773175	36.541	0.14465	36.543	36.494	36.639	0.0016785	1149	37	0.92958635	0.022021592	0.9280669	376.82562		8.92688	-0.0001651	0.0015946	0.0001579	NaN	39.459	151	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15141	+		21052	11257	12141	12495							0.0719696117660078
QGAGAKGP	8	Unmodified	_QGAGAKGP_					0	0	0		ENST00000222374.2_1_19:44126724-44127456:-|nuORF	ENST00000222374.2_1_19:44126724-44127456:-|nuORF	ENST00000222374.2_1_19:44126724-44127456:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3627642804001	1	685.362764	684.355488	-0.1831	-0.00012549	7.0024	0.0047992	6.8193	0.0046737	685.3665663670325	55.218	0.09626	55.217	55.193	55.29	-0.00061798	645	52	1.2351195	0.03064096	1.2336	252.3355	0	6.259964						100	5	2	NaN	NaN	NaN	0.84727	1	2853	2853		1.2418	0	1	11167			21053	6238	12142	12496	16690	16690					0.0006842894057399462
QGAGGSRG	8	Unmodified	_QGAGGSRG_					0	0	0			REV__ENST00000379287.3_1_6:13486967-13487132:-|nuORF	REV__ENST00000379287.3_1_6:13486967-13487132:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3325267845001	1	689.332527	688.32525	1.8756	0.0012929	3.673	0.0025319	5.5485	0.0038248	689.3342505352051	23.175	0.14481	23.162	23.138	23.283	-0.013294	696	97	1.2044523	0.057822347	1.2029328	246.04236	0	11.811798						121	7	2	NaN	NaN	NaN	0.81756	1	2919	2919		6.8632	0	1	7458.5	+		21054	11956	12143	12497	16691	16691					-0.03137929724607602
QGARPGGG	8	Unmodified	_QGARPGGG_					0	0	0		ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3532622266002	1	699.353262	698.345986	0.47026	0.00032888	8.4989	0.0059437	8.9692	0.0062726	699.3593181664934	41.256	0.14447	41.263	41.191	41.335	0.0074921	702	58	1.2008407	0.034308076	1.1993213	245.23593	0	7.0064087						168	7	2	NaN	NaN	NaN	0.84887	1	3129	3129		0.32989	0	1	15994			21055	6167	12144	12498	16692	16692					-0.015253393449370378
QGASSSAG	8	Unmodified	_QGASSSAG_					0	0	0		ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	332.64846769170003	2	332.648468	663.282382	1.1685	0.0003887	2.3824	0.00079252	3.551	0.0011812	332.6502546498357	33.213	0.096535	33.21	33.138	33.235	-0.0024757	1536	85	0.69119483	0.05210662	0.6896754	282.59006	0	21.303406						180	5	3	NaN	NaN	NaN	0.84887	1	2324	2324		0.32989	0	1	17802			21056	349	12145	12499	16693	16693					-0.06272744572697775
QGAVESIAM	9	Unmodified	_QGAVESIAM_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	905.4396939724	1	905.439694	904.432418	1.8614	0.0016854	0.41252	0.00037352	2.274	0.0020589	905.439337098063	21.561	0.1205	21.561	21.513	21.633	0	369	37	1.4001206	0.02141881	1.4001206	284.67697	0	4.35495						82	6	2	NaN	NaN	NaN	0.089764	1	6159	6159		37.302	7.704	1	5933.8			21057	795	12146	12500	16694	16694					-0.02362140625268694
QGAVESIAM	9	Unmodified	_QGAVESIAM_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.4396939724	1	905.439694	904.432418	2.5556	0.0023139	-2.3886	-0.0021627	0.16698	0.00015119	905.4375101516598	21.537	0.048201	21.523	21.499	21.547	-0.014004	369	43	1.4001206	0.024988651	1.3986012	284.67697	0	5.0807495						57	3	2	NaN	NaN	NaN	0.070055	1	6035	6035		40.154	0.69505	1	4319.8			21058	795	12146	12500	16695	16695					-0.02362140625268694
QGCSACVP	8	Unmodified	_QGCSACVP_					0	0	0			REV__nc|ENSG00000106683|P53667-3|LIMK1	REV__nc|ENSG00000106683|P53667-3|LIMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.3065713093999	1	764.306571	763.299295	1.6367	0.0012509	-4.4012	-0.0033639	-2.7645	-0.002113	764.303460371343	27.639	0.28953	27.639	27.591	27.881	0	597	61	1.2639319	0.03598845	1.2639319	257.69772	0	7.337555						307	13	3	NaN	NaN	NaN	0.84455	1	4255	4255		2.7852	0	1	40565	+		21059	8995	12147	12501	16696	16696					-0.0918228328278019
QGDRMELTI	9	Unmodified	_QGDRMELTI_					0	0	0			REV__nc|ENSG00000078900|O15350-12|TP73	REV__nc|ENSG00000078900|O15350-12|TP73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.76604852595	2	531.766049	1061.51754	2.5003	0.0013296	2.7641	0.0014698	5.2644	0.0027994	531.765785628424	25.732	0.26542	25.732	25.66	25.926	0	1260	100	0.8615505	0.060798764	0.8615505	349.56403	0	24.668365						633	12	4	NaN	NaN	NaN	0.21199	1	11177	11177		24.562	0	1	169380	+		21060	8636	12148	12502	16697	16697					-0.010753951594551836
QGDYFTKDIE	10	Unmodified	_QGDYFTKDIE_					0	0	0		ENSG00000111339|ENST00000228936|ART4	ENSG00000111339|ENST00000228936|ART4	ENSG00000111339|ENST00000228936|ART4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.85578746933334	3	405.855787	1214.54553	1.3134	0.00053306	-1.2189	-0.00049468	0.094565	3.838E-05	405.85521926632896	22.477	0.12035	22.477	22.429	22.549	0	1434	40	0.75435036	0.024104536	0.75435036	458.35736	0	14.646362						130	6	4	NaN	NaN	NaN	0.77513	1	16833	16833		0.63172	0	1	10500			21061	1803	12149	12503	16698	16698					-0.05315793698378002
QGEPCPVRRV	10	Unmodified	_QGEPCPVRRV_					0	0	0			REV__nc|ENSG00000169218|Q2MKA7-2|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-2|RSPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.80075701055	2	570.800757	1139.58696	0.77133	0.00044028	6.3981	0.003652	7.1694	0.0040923	570.8041535443008	30.317	0.16889	30.311	30.287	30.456	-0.0064087	1041	112	0.9955231	0.067611575	0.99400365	403.5672	0	27.408508						401	8	3	NaN	NaN	NaN	0.78146	1	13967	13967		0.16111	0	1	41120	+		21062	10542	12150	12504	16699	16699					0.02275108579942753
QGEPCPVRRV	10	Unmodified						0	0	0			REV__nc|ENSG00000169218|Q2MKA7-2|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-2|RSPO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.800757	1139.58696	0.77133	0.00044028	6.3981	0.003652	7.1694	0.0040923	570.8041535443008	30.317	0.16889	30.311	30.287	30.456	-0.0064087	1041	112	0.9955231	0.067611575	0.99400365	403.5672		27.408508	-0.0037026	5.5683E-05	0.0010685	NaN	0.16111	401	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41120	+		21063	10542	12150	12504							0.02275108579942753
QGFAGTQV	8	Unmodified	_QGFAGTQV_					0	0	0			REV__ENST00000586720.5_1_17:76968081-76968177:-|nuORF	REV__ENST00000586720.5_1_17:76968081-76968177:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.3995437172	1	807.399544	806.392267	1.5724	0.0012695	-2.3301	-0.0018813	-0.75773	-0.00061179	807.3971057466156	43.513	0.21603	43.513	43.441	43.657	0	417	106	1.3715409	0.06263471	1.3715409	279.3737	0	12.758301						243	10	2	NaN	NaN	NaN	0.83211	1	4838	4838		4.9097	0	1	19203	+		21064	12891	12151	12505	16700	16700					-0.018673192335313615
QGFAKGCD	8	Unmodified	_QGFAKGCD_					0	0	0			REV__ENSG00000185730|ENST00000330143|ZNF696	REV__ENSG00000185730|ENST00000330143|ZNF696	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.18162040479996	2	413.18162	824.348688	1.0906	0.00045061	3.5825	0.0014802	4.6731	0.0019308	413.182854360919	36.758	0.14425	36.759	36.663	36.807	0.0016747	1428	37	0.7580582	0.022246659	0.75653875	308.70386	0	9.059509						128	7	2	NaN	NaN	NaN	0.83913	1	4957	4957		3.9685	1.1833	1	13312	+		21065	10972	12152	12506	16701	16701					-0.07051252002315778
QGFAKGCD	8	Unmodified						0	0	0			REV__ENSG00000185730|ENST00000330143|ZNF696	REV__ENSG00000185730|ENST00000330143|ZNF696	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	413.18162	824.348688	1.2448	0.00051431	2.1688	0.00089609	3.4135	0.0014104	413.1826866855741	36.398	0.26527	36.398	36.35	36.615	0	1443	43	0.7487872	0.02596569	0.7487872	304.92847		10.574036	-0.18051	-0.00072027	-0.0038758	NaN	3.9685	133	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10814	+		21066	10972	12152	12506							-0.07051252002315778
QGFAKGCD	8	Unmodified						0	0	0			REV__ENSG00000185730|ENST00000330143|ZNF696	REV__ENSG00000185730|ENST00000330143|ZNF696	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	413.18162	824.348688	1.0906	0.00045061	3.5825	0.0014802	4.6731	0.0019308	413.182854360919	36.758	0.14425	36.759	36.663	36.807	0.0016747	1428	37	0.7580582	0.022246659	0.75653875	308.70386		9.059509	0.18051	0.00044798	0.0038758	NaN	3.9685	128	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13312	+		21067	10972	12152	12506							-0.07051252002315778
QGFEYVIFF	9	Unmodified	_QGFEYVIFF_					0	0	0		ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	ENSG00000196407|ENST00000368817|THEM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2844000671	2	575.2844	1148.55425	0.55136	0.00031719	2.9552	0.0017001	3.5066	0.0020173	575.2859137640962	32.031	0.16893	32.027	31.954	32.123	-0.0037613	1209	61	0.892844	0.036782026	0.8913246	361.90918	0	14.909393						253	8	3	NaN	NaN	NaN	0.18779	1	14257	14257		26.115	5.6663	1	29564			21068	5619	12153	12507	16702	16702					-0.014087752712384827
QGFMLLRQ	8	Unmodified	_QGFMLLRQ_					0	0	0		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.7709369386	2	496.770937	991.527321	1.0384	0.00051587	-9.9491	-0.0049424	-8.9106	-0.0044265	496.76562175897055	12.006	0.19188	11.998	11.902	12.094	-0.0081863	1320	40	0.824661	0.024005413	0.8231416	334.8989	0	9.748718						104	9	2	NaN	NaN	NaN	0.67593	1	8109	8109		20.555	1.3919	1	8520.1			21069	3381	12154	12508	16703	16703					0.031218376365814038
QGGGGAGQ	8	Unmodified	_QGGGGAGQ_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.2794285814999	1	631.279429	630.272152	2.4833	0.0015676	-4.9941	-0.0031526	-2.5108	-0.001585	631.2810617491494	28.797	0.07239	28.789	28.789	28.861	-0.0083504	1134	34	0.9387595	0.020176709	0.93724006	192.1114	0	4.1290283						37	4	2	NaN	NaN	NaN	0.84945	1	1376	1376		0	0	1	1817.2			21070	7185	12155	12509	16704	16704					-0.05777307507298701
QGGGGRGP	8	Unmodified	_QGGGGRGP_					0	0	0		ENST00000491066.1_1_X:153697015-153697611:+|nuORF	ENST00000491066.1_1_X:153697015-153697611:+|nuORF	ENST00000491066.1_1_X:153697015-153697611:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.1724443145	2	343.172444	684.330336	1.8929	0.00064958	2.8412	0.00097502	4.7341	0.0016246	343.1735115469976	35.987	0.072445	35.988	35.964	36.036	0.0011024	1503	40	0.711653	0.024164736	0.71013355	290.77396	0	9.873474						66	4	2	NaN	NaN	NaN	0.84887	1	2849	2849		0.32989	0	1	4960.8			21071	7267	12156	12510	16705	16705					-0.024456258620034532
QGGGVPPP	8	Unmodified	_QGGGVPPP_					0	0	0			REV__ENST00000373055.5_1_1:38174529-38174823:+|nuORF	REV__ENST00000373055.5_1_1:38174529-38174823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073	1	708.367515	707.360239	0.57905	0.00041018	7.5569	0.0053531	8.136	0.0057633	708.373061939177	41.281	0.26476	41.281	41.209	41.474	0	681	40	1.2134778	0.023461461	1.2134778	247.75597	0	4.7901154						229	12	3	NaN	NaN	NaN	0.84876	1	3365	3365		0.39566	0	1	21986	+		21072	11918	12157	12511	16706	16706					-0.0051468691667651
QGGHLHMG	8	Unmodified	_QGGHLHMG_					0	0	0			REV__ENST00000447216.2_1_11:118889505-118891019:+|nuORF	REV__ENST00000447216.2_1_11:118889505-118891019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	836.3831821465002	1	836.383182	835.375906	1.1034	0.00092284	2.7596	0.0023081	3.863	0.003231	836.3851042459181	39.066	0.19302	39.071	39.047	39.24	0.0046806	588	67	1.2693287	0.039574742	1.2678093	258.40347	0	8.0563965						151	9	2	NaN	NaN	NaN	0.84876	1	5074	5074		0.39566	0	1	23789	+		21073	12210	12158	12512	16707	16707					-0.04836723671257914
QGGPGGAA	8	Unmodified	_QGGPGGAA_					0	0	0		nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2892649862999	1	614.289265	613.281989	0.26525	0.00016294	-2.8363	-0.0017423	-2.571	-0.0015794	614.2892114939684	33.238	0.12067	33.238	33.238	33.359	0	1143	76	0.9332562	0.045900643	0.9332562	191.09737	0	9.398819						178	6	2	NaN	NaN	NaN	0.84887	1	940	940		0.32989	0	1	15111			21074	4039	12159	12513	16708	16708					-0.04012119501919642
QGGPGGAA	8	Unmodified	_QGGPGGAA_					0	0	0		nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.2892649862999	1	614.289265	613.281989	-0.19055	-0.00011705	-0.0084332	-5.1804E-06	-0.19898	-0.00012223	614.2918508222347	46.676	0.095936	46.686	46.638	46.733	0.0098152	732	46	1.1827712	0.027125955	1.1812518	242.18907	0	5.554428						75	5	2	NaN	NaN	NaN	0.84945	1	887	887		0	0	1	4341.9			21075	4039	12159	12513	16709	16709					-0.04012119501919642
QGGTELLSC	9	Unmodified	_QGGTELLSC_					0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	907.4189585303	1	907.418959	906.411682	1.3499	0.0012249	-0.16825	-0.00015267	1.1817	0.0010723	907.418145892811	35.048	0.048275	35.048	35.023	35.072	0	462	40	1.3447032	0.023276687	1.3447032	273.40036	0	4.732544						42	3	2	NaN	NaN	NaN	0.66529	1	6182	6182		2.1763	0.50597	1	2597.9	+		21076	10259	12160	12514	16710	16710					-0.045267310049325715
QGGWGGSG	8	Unmodified	_QGGWGGSG_					0	0	0		ENST00000274811.8_1_5:175955866-175955995:-|nuORF	ENST00000274811.8_1_5:175955866-175955995:-|nuORF	ENST00000274811.8_1_5:175955866-175955995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.15117755615	2	353.151178	704.287802	1.8904	0.00066761	-8.9682	-0.0031671	-7.0777	-0.0024995	353.147861495984	28.194	0.096525	28.194	28.17	28.267	0	1524	37	0.698637	0.022321641	0.698637	285.2976	0	9.115356						65	5	2	NaN	NaN	NaN	0.84727	1	3291	3291		1.2418	0	1	5070.2			21077	6348	12161	12515	16711	16711					-0.07617020990232959
QGHTSAGL	8	Unmodified	_QGHTSAGL_					0	0	0			REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.69320954635003	2	385.69321	769.371866	1.4884	0.00057406	2.7865	0.0010747	4.2749	0.0016488	385.6946901691724	55.028	0.072029	55.028	55.004	55.076	0	1500	37	0.71351165	0.02230227	0.71351165	290.9025	0	9.092773						99	4	3	NaN	NaN	NaN	0.84512	1	4347	4347		2.4615	0	1	12122	+		21078	8294	12162	12516	16712	16712					-0.02204489893324535
QGHTSAGL	8	Unmodified						0	0	0			REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	385.69321	769.371866	1.4884	0.00057406	2.7865	0.0010747	4.2749	0.0016488	385.6946901691724	55.028	0.072029	55.028	55.004	55.076	0	1500	37	0.71351165	0.02230227	0.71351165	290.9025		9.092773	0.0012148	-0.00078766	-0.0010986	NaN	2.4615	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12122	+		21079	8294	12162	12516							-0.02204489893324535
QGHTSAGL	8	Unmodified						0	0	0			REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	REV__nc|ENSG00000152348|Q9H0Y0-2|ATG10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	385.69321	769.371866	-0.30673	-0.0001183	5.7412	0.0022143	5.4344	0.002096	385.69637948350754	55.026	0.071976	55.025	55.001	55.073	-0.0006218	1494	40	0.7172283	0.024156868	0.71570885	292.4178		9.848907	-0.0012148	0.0014915	0.0010986	NaN	2.4615	95	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10456	+		21080	8294	12162	12516							-0.02204489893324535
QGIFLAGL	8	Unmodified	_QGIFLAGL_					0	0	0		ENST00000476538.1_1_1:150240359-150240575:-|nuORF	ENST00000476538.1_1_1:150240359-150240575:-|nuORF	ENST00000476538.1_1_1:150240359-150240575:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4770657567002	1	818.477066	817.469789	2.2397	0.0018331	-0.5636	-0.00046129	1.6761	0.0013718	818.4757799473769	29.956	0.096531	29.956	29.932	30.029	0	486	43	1.3303722	0.02508998	1.3303722	270.9264	0	5.109497						76	5	2	NaN	NaN	NaN	0.81807	1	4985	4985		6.794	0	1	5487.5			21081	7180	12163	12517	16713	16713					0.05375318702670029
QGKGGPAG	8	Unmodified	_QGKGGPAG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3471142162	1	671.347114	670.339838	0.63913	0.00042908	-2.021	-0.0013568	-1.3819	-0.00092775	671.3455130570031	38.155	0.072063	38.155	38.107	38.179	0	1200	52	0.89836043	0.03125626	0.89836043	183.6107	0	6.3882904						73	4	2	NaN	NaN	NaN	0.84945	1	2607	2607		0	0	1	4818.1	+		21082	8655	12164	12518	16714	16714					-0.008518575764810521
QGKGGPAG	8	Unmodified	_QGKGGPAG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3471142162	1	671.347114	670.339838	1.0159	0.00068201	-2.423	-0.0016267	-1.4071	-0.00094465	671.3451218665481	40.727	0.14402	40.733	40.685	40.829	0.0067558	744	37	1.1755381	0.021702051	1.1740186	240.26144	0	4.435547						101	7	2	NaN	NaN	NaN	0.84945	1	2529	2529		0	0	1	7830.5	+		21083	8655	12164	12518	16715	16715					-0.008518575764810521
QGKGGPAG	8	Unmodified						0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	671.347114	670.339838	0.72155	0.00048441	-2.0649	-0.0013862	-1.3433	-0.00090182	671.346400656579	40.753	0.14392	40.753	40.705	40.849	0	744	43	1.1755381	0.02531898	1.1755381	240.26143		5.1748047	0.0095935	0.00012237	0.00075972	NaN	0	153	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11462	+		21084	8655	12164	12518							-0.008518575764810521
QGKGGPAG	8	Unmodified						0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	671.347114	670.339838	0.63913	0.00042908	-2.021	-0.0013568	-1.3819	-0.00092775	671.3455130570031	38.155	0.072063	38.155	38.107	38.179	0	1200	52	0.89836043	0.03125626	0.89836043	183.6107		6.3882904	0	0	0	NaN	0	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4818.1	+		21085	8655	12164	12518							-0.008518575764810521
QGKGGPAG	8	Unmodified						0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	671.347114	670.339838	1.0159	0.00068201	-2.423	-0.0016267	-1.4071	-0.00094465	671.3451218665481	40.727	0.14402	40.733	40.685	40.829	0.0067558	744	37	1.1755381	0.021702051	1.1740186	240.26144		4.435547	-0.0095935	-0.00011806	-0.00075972	NaN	0	101	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7830.5	+		21086	8655	12164	12518							-0.008518575764810521
QGLGATLL	8	Unmodified	_QGLGATLL_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.4563303146002	1	772.45633	771.449054	1.7701	0.0013673	-1.0028	-0.00077464	0.76724	0.00059266	772.4556078748269	55.797	0.024025	55.797	55.773	55.797	0	531	58	1.3034686	0.034110665	1.3034686	265.7091	0	6.9533997						64	2	2	NaN	NaN	NaN	0.84887	1	4375	4375		0.32989	0	1	10962	+		21087	9474	12165	12519	16716	16716					0.05418728323013511
QGNGKEQRSK	10	Unmodified	_QGNGKEQRSK_					0	0	0		ENSG00000156313|ENST00000645032|RPGR	ENSG00000156313|ENST00000645032|RPGR	ENSG00000156313|ENST00000645032|RPGR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.29689305315	2	566.296893	1130.57923	1.4992	0.00084898	-8.8343	-0.0050028	-7.3351	-0.0041539	566.2917319911548	34.855	0.048233	34.855	34.831	34.879	0	1209	43	0.892844	0.02575022	0.892844	361.97748	0	10.439667						44	3	2	NaN	NaN	NaN	0.62092	1	14102	14102		13.463	0.46021	1	4008.5			21088	3913	12166	12520	16717	16717					0.019166725840250365
QGNGPAAA	8	Unmodified	_QGNGPAAA_					0	0	0			REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.1668276203499	2	343.166828	684.319102	0.95266	0.00032692	-10.638	-0.0036506	-9.6854	-0.0033237	343.1633642607527	33.842	0.16891	33.842	33.793	33.962	0	1482	49	0.72465914	0.029717028	0.72465914	296.0883	0	12.142059						160	8	2	NaN	NaN	NaN	0.84692	1	2925	2925		1.4396	0.19772	1	26913	+		21089	8161	12167	12521	16718	16718					-0.035684479561609805
QGNGPAAA	8	Unmodified						0	0	0			REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	343.166828	684.319102	0.95266	0.00032692	-10.638	-0.0036506	-9.6854	-0.0033237	343.1633642607527	33.842	0.16891	33.842	33.793	33.962	0	1482	49	0.72465914	0.029717028	0.72465914	296.0883		12.142059	0.0015243	0.00057116	-0.00016889	NaN	1.4396	160	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26913	+		21090	8161	12167	12521							-0.035684479561609805
QGNGPAAA	8	Unmodified						0	0	0			REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	REV__BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	343.166828	684.319102	1.0939	0.00037538	-12.964	-0.004449	-11.871	-0.0040736	343.1630473294088	33.84	0.12064	33.839	33.79	33.911	-0.0018463	1479	55	0.72651637	0.033435285	0.7249969	296.84714		13.661316	-0.0015243	-0.0010255	0.00016889	NaN	1.4396	198	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28741	+		21091	8161	12167	12521							-0.035684479561609805
QGRVPYPRPGM	11	Unmodified	_QGRVPYPRPGM_					0	0	0		nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000434030.1_1_3:50311077-50311539:+|nuORF;ENST00000419007.5_1_3:50311077-50311539:+|nuORF	nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.3296816254999	2	629.329682	1256.64481	0.97324	0.00061249	-3.4137	-0.0021483	-2.4404	-0.0015358	629.3289470849512	29.4	0.21716	29.393	29.248	29.465	-0.0077209	1119	76	0.9479278	0.045846224	0.94640833	383.84473	0	18.564514						267	10	3	NaN	NaN	NaN	0.77278	1	17160	17160		1.5054	0	1	42030			21092	416	12168	12522	16719	16719					0.026753705053579324
QGSIDQAQF	9	Unmodified	_QGSIDQAQF_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.2354385018	2	497.235439	992.456324	1.6148	0.00080295	-0.93516	-0.00046499	0.67967	0.00033796	497.2353155058732	20.189	0.12014	20.189	20.141	20.261	0	1368	37	0.7950918	0.022196114	0.7950918	322.88654	0	9.013855						102	6	3	NaN	NaN	NaN	0.41766	1	8301	8301		13.003	0.43313	1	8871.6	+		21093	10069	12169	12523	16720	16720					-0.040205838672363825
QGTAGEGA	8	Unmodified	_QGTAGEGA_					0	0	0		ENST00000446425.2_1_2:24150255-24150360:+|nuORF	ENST00000446425.2_1_2:24150255-24150360:+|nuORF	ENST00000446425.2_1_2:24150255-24150360:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	345.65629272379994	2	345.656293	689.298033	0.7199	0.00024884	-8.4864	-0.0029334	-7.7665	-0.0026845	345.6534143785184	35.241	0.14478	35.241	35.192	35.337	0	1500	67	0.71351165	0.040909767	0.71351165	291.49234	0	16.712921						209	7	3	NaN	NaN	NaN	0.84727	1	3006	3006		1.2418	0	1	17940			21094	7022	12170	12524	16721	16721					-0.059044580556701476
QGTFPVLTGDE	11	Unmodified	_QGTFPVLTGDE_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2825856596502	2	582.282586	1162.55062	2.0209	0.0011768	-9.6286	-0.0056065	-7.6076	-0.0044298	582.2775049694864	16.758	0.11993	16.758	16.734	16.854	0	1260	67	0.8615505	0.04051274	0.8615505	349.1747	0	16.41925						114	6	3	NaN	NaN	NaN	0.76803	1	15228	15228		2.3381	0.1618	1	7566.5	+		21095	8323	12171	12525	16722	16722					-0.024154898357210186
QGTFPVLTGDE	11	Unmodified						0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.282586	1162.55062	2.0209	0.0011768	-9.6286	-0.0056065	-7.6076	-0.0044298	582.2775049694864	16.758	0.11993	16.758	16.734	16.854	0	1260	67	0.8615505	0.04051274	0.8615505	349.1747		16.41925	0.0082753	-0.00012056	0.00075972	NaN	2.3381	114	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7566.5	+		21096	8323	12171	12525							-0.024154898357210186
QGTFPVLTGDE	11	Unmodified						0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.282586	1162.55062	2.4657	0.0014357	-9.296	-0.0054129	-6.8303	-0.0039772	582.2762709692624	16.754	0.047918	16.741	16.717	16.765	-0.013294	1260	34	0.8615505	0.020266235	0.8600311	349.1747		8.213623	-0.0082753	0.00026667	-0.00075972	NaN	2.3381	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3653.9	+		21097	8323	12171	12525							-0.024154898357210186
QGTLQELV	8	Unmodified	_QGTLQELV_					0	0	0			REV__nc|ENSG00000142676|P62913-2|RPL11	REV__nc|ENSG00000142676|P62913-2|RPL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.2452749066	2	444.245275	886.475997	0.75059	0.00033345	-1.4293	-0.00063497	-0.67873	-0.00030152	444.24463984332476	35.53	0.43414	35.53	35.482	35.916	0	1419	64	0.76361835	0.038912714	0.76361835	310.61148	0	15.828247						395	19	2	NaN	NaN	NaN	0.78967	1	5895	5895		10.605	0	1	171860	+		21098	9849	12172	12526	16723	16723					0.02821792143527091
QGTLQELV	8	Unmodified						0	0	0			REV__nc|ENSG00000142676|P62913-2|RPL11	REV__nc|ENSG00000142676|P62913-2|RPL11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	444.245275	886.475997	0.75059	0.00033345	-1.4293	-0.00063497	-0.67873	-0.00030152	444.24463984332476	35.53	0.43414	35.53	35.482	35.916	0	1419	64	0.76361835	0.038912714	0.76361835	310.61148		15.828247	0.00049464	-0.00011568	-0.00016677	NaN	10.605	395	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171860	+		21099	9849	12172	12526							0.02821792143527091
QGTLQELV	8	Unmodified						0	0	0			REV__nc|ENSG00000142676|P62913-2|RPL11	REV__nc|ENSG00000142676|P62913-2|RPL11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	444.245275	886.475997	0.6846	0.00030413	-1.1915	-0.00052932	-0.5069	-0.00022519	444.24476285327233	35.529	0.2894	35.529	35.481	35.77	0.00053024	1416	67	0.76547134	0.040767908	0.7639519	311.3652		16.582855	-0.00049464	9.5628E-05	0.00016677	NaN	10.605	355	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173210	+		21100	9849	12172	12526							0.02821792143527091
QGVDDAFYTL	10	Unmodified	_QGVDDAFYTL_					0	0	0		ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1128.5207810649	1	1128.52078	1127.5135	1.1347	0.0012805	0.76345	0.00086157	1.8981	0.0021421	1128.5224566527957	28.532	0.096508	28.523	28.475	28.572	-0.0083485	90	55	1.5652816	0.031805873	1.5637622	317.3126	0	6.4476624						98	5	2	NaN	NaN	NaN	0.34693	1	13548	13548		25.801	9.3843	1	7933.5			21101	2830	12173	12527	16724	16724					-0.045151613815278324
QGVDDAFYTL	10	Unmodified						0	0	0		ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1128.52078	1127.5135	2.1636	0.0024417	-0.10416	-0.00011755	2.0595	0.0023241	1128.5203346625622	28.508	0.072407	28.508	28.484	28.556	0	90	67	1.5652816	0.038877964	1.5652816	317.3126		7.8812866	-0.0075275	-0.0005631	0.00075972	NaN	25.801	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8385			21102	2830	12173	12527							-0.045151613815278324
QGVGLDGHN	9	Unmodified	_QGVGLDGHN_					0	0	0			REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.4220700733	1	896.42207	895.414794	-0.42584	-0.00038173	-8.6287	-0.0077349	-9.0545	-0.0081167	896.4143140307176	56.083	0.048054	56.082	56.058	56.106	-0.00056458	372	58	1.3983358	0.0339185	1.3968164	284.35703	0	6.897461						118	3	3	NaN	NaN	NaN	0.6532	1	5878	5878		3.2116	0.058268	1	17748	+		21103	11935	12174	12528	16725	16725					-0.03709719835910619
QGVGLDGHN	9	Unmodified						0	0	0			REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	896.42207	895.414794	1.7936	0.0016078	-10.639	-0.0095371	-8.8455	-0.0079293	896.4125191543873	56.085	0.072052	56.085	56.061	56.133	0	378	52	1.3947657	0.030348182	1.3947657	283.631		6.171417	0.0013502	-0.00079793	-0.0010254	NaN	3.2116	116	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17641	+		21104	11935	12174	12528							-0.03709719835910619
QGVGLDGHN	9	Unmodified						0	0	0			REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	REV__ENST00000375436.8_1_1:17734784-17734874:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	896.42207	895.414794	-0.42584	-0.00038173	-8.6287	-0.0077349	-9.0545	-0.0081167	896.4143140307176	56.083	0.048054	56.082	56.058	56.106	-0.00056458	372	58	1.3983358	0.0339185	1.3968164	284.35703		6.897461	-0.0013502	0.0010042	0.0010254	NaN	3.2116	118	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17748	+		21105	11935	12174	12528							-0.03709719835910619
QGVSDPTPP	9	Unmodified	_QGVSDPTPP_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.4312377760999	1	897.431238	896.423961	-0.0041032	-3.6823E-06	-5.566	-0.0049951	-5.5701	-0.0049988	897.4273756196043	58.506	0.047955	58.506	58.482	58.53	-0.00048447	348	43	1.412609	0.024967432	1.4110895	287.2546	0	5.077118						72	3	3	NaN	NaN	NaN	0.65818	1	5892	5892		2.7852	0	1	5448.4	+		21106	10395	12175	12529	16726	16726					-0.028393712702495577
QGWGPISL	8	Unmodified	_QGWGPISL_					0	0	0		ENST00000419912.1_1_2:242813297-242815423:+|nuORF;ENSG00000188011|ENST00000343216|RTP5	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4515792877002	1	857.451579	856.444303	1.4922	0.0012795	6.5251	0.005595	8.0174	0.0068745	857.4577322033916	35.868	0.072342	35.868	35.844	35.916	0	513	37	1.3142352	0.021526337	1.3142352	267.43872	0	4.3804626						68	4	2	NaN	NaN	NaN	0.8439	1	5488	5488		3.1533	0	1	6068.8			21107	5529	12176	12530	16727	16727					0.010338441802446141
QGWGPISL	8	Unmodified						0	0	0		ENST00000419912.1_1_2:242813297-242815423:+|nuORF;ENSG00000188011|ENST00000343216|RTP5	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.451579	856.444303	1.0814	0.00092721	7.7235	0.0066226	8.8049	0.0075498	857.4585312667414	35.866	0.14455	35.867	35.819	35.964	0.0011024	507	40	1.3178225	0.023316503	1.316303	268.16873		4.744751	-0.00022204	0.00048087	0.001034	NaN	3.1533	108	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7765.9			21108	5529	12176	12530							0.010338441802446141
QGYGFYPFS	9	Unmodified	_QGYGFYPFS_					0	0	0			REV__CYP2R1|p.R145P|1|0.17|ENSG00000186104|chr11:14880702-14880702|C/G|missense_variant	REV__CYP2R1|p.R145P|1|0.17|ENSG00000186104|chr11:14880702-14880702|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4676232824	1	1065.46762	1064.46035	1.9033	0.0020279	-1.5232	-0.0016229	0.38019	0.00040508	1065.4655470869573	27.712	0.2413	27.712	27.615	27.857	0	189	118	1.5068626	0.06911385	1.5068626	305.6888	0	14.020752						473	11	2	NaN	NaN	NaN	0.23112	1	11310	11310		23.334	2.779	1	52248	+		21109	8300	12177	12531	16728	16728					-0.06930494373523288
QHAPAAGA	8	Unmodified	_QHAPAAGA_					0	0	0		ENST00000357635.9_1_15:75194880-75195063:-|nuORF	ENST00000357635.9_1_15:75194880-75195063:-|nuORF	ENST00000357635.9_1_15:75194880-75195063:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3580132535	1	722.358013	721.350737	1.4745	0.0010651	-7.0718	-0.0051084	-5.5973	-0.0040433	722.352775784543	29.763	0.36198	29.763	29.642	30.004	0	714	64	1.1936152	0.037935734	1.1936152	243.61089	0	7.7424927						362	16	3	NaN	NaN	NaN	0.8439	1	3614	3614		3.1533	0.69183	1	42771			21110	6578	12178	12532	16729	16729					-0.02108455202198911
QHDGNVTK	8	Unmodified	_QHDGNVTK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.72249830205	2	449.722498	897.430444	0.88666	0.00039875	-5.3859	-0.0024222	-4.4992	-0.0020234	449.71986643678844	30.679	0.12061	30.673	30.649	30.77	-0.0057545	1377	37	0.7895419	0.022203326	0.78802246	321.09644	0	9.029785						106	6	3	NaN	NaN	NaN	0.81756	1	5906	5906		6.8632	0.77288	1	11243			21111	3211	12179	12533	16730	16730					-0.022374333188622586
QHDVTSGYLG	10	Unmodified	_QHDVTSGYLG_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7539953957	2	538.753995	1075.49344	1.9217	0.0010353	0.3076	0.00016572	2.2293	0.0012011	538.75354435141	15.918	0.14387	15.918	15.846	15.99	0	1296	34	0.8394264	0.020296931	0.8394264	340.53073	0	8.233887						68	7	2	NaN	NaN	NaN	0.71559	1	11775	11775		6.9844	0.55443	1	3908.3	+		21112	10513	12180	12534	16731	16731					-0.041289123214710344
QHFLDEEGFE	10	Unmodified	_QHFLDEEGFE_					0	0	0			REV__ENSG00000176619|ENST00000325327|LMNB2	REV__ENSG00000176619|ENST00000325327|LMNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.7698424251502	2	625.769842	1249.52513	2.1553	0.0013487	-0.15982	-0.00010001	1.9955	0.0012487	625.7691249333351	18.7	0.071936	18.7	18.628	18.7	0	1176	88	0.9130621	0.053267717	0.9130621	369.74945	0	21.571075						161	4	2	NaN	NaN	NaN	0.60686	1	17758	17758		14.425	1.8553	1	21004	+		21113	10751	12181	12535	16732	16732					-0.08964964358165162
QHFLDEEGFE	10	Unmodified						0	0	0			REV__ENSG00000176619|ENST00000325327|LMNB2	REV__ENSG00000176619|ENST00000325327|LMNB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	625.769842	1249.52513	2.1553	0.0013487	-0.15982	-0.00010001	1.9955	0.0012487	625.7691249333351	18.7	0.071936	18.7	18.628	18.7	0	1176	88	0.9130621	0.053267717	0.9130621	369.74945		21.571075	0	0	0	NaN	14.425	161	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21004	+		21114	10751	12181	12535							-0.08964964358165162
QHFSLHAPK	9	Unmodified	_QHFSLHAPK_					0	0	0			REV__ZNF750|p.G127Dfs*239|1|0.19|ENSG00000141579|chr17:82832075-82832075|C/-|frameshift_variant	REV__ZNF750|p.G127Dfs*239|1|0.19|ENSG00000141579|chr17:82832075-82832075|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5635893531	1	1064.56359	1063.55631	1.8516	0.0019712	1.9743	0.0021018	3.8259	0.004073	1064.566065790263	28.918	0.24134	28.918	28.87	29.112	0	126	109	1.544062	0.06365895	1.544062	313.23862	0	12.914276						301	11	2	NaN	NaN	NaN	0.38313	1	11289	11289		14.425	5.463	1	64799	+		21115	13656	12182	12536	16733	16733					0.02707698257222546
QHGIRPVK	8	Unmodified	_QHGIRPVK_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5581100447001	1	934.55811	933.550834	1.2961	0.0012113	1.9218	0.001796	3.2179	0.0030073	934.5586263877443	34.083	0.04834	34.083	34.059	34.107	0	201	40	1.4997677	0.023062348	1.4997677	304.7949	0	4.68692						51	3	2	NaN	NaN	NaN	0.8439	1	6699	6699		3.1533	0	1	3084.2			21116	2520	12183	12537	16734	16734					0.08140019465417936
QHGIRPVK	8	Unmodified						0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	934.55811	933.550834	1.9741	0.0018449	1.601	0.0014962	3.5751	0.0033411	934.5585113237792	34.058	0.024151	34.056	34.056	34.08	-0.0012474	201	46	1.4997677	0.026618958	1.4982482	304.7949		5.4096985	-0.013306	-0.0001543	-0.00075972	NaN	3.1533	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3037.3			21117	2520	12183	12537							0.08140019465417936
QHHQCDPLV	9	Unmodified	_QHHQCDPLV_					0	0	0			REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.75073281275	2	538.750733	1075.48691	2.4443	0.0013169	-8.2166	-0.0044267	-5.7722	-0.0031098	538.7467476889876	18.628	0.23993	18.628	18.604	18.844	0	1290	97	0.84311575	0.059010506	0.84311575	342.02747	0	23.938873						403	11	2	NaN	NaN	NaN	0.25448	1	11774	11774		21.835	5.4184	1	65078	+		21118	12265	12184	12538	16735	16735					-0.04781128753847952
QHHQCDPLV	9	Unmodified						0	0	0			REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.750733	1075.48691	2.4443	0.0013169	-8.2166	-0.0044267	-5.7722	-0.0031098	538.7467476889876	18.628	0.23993	18.628	18.604	18.844	0	1290	97	0.84311575	0.059010506	0.84311575	342.02747		23.938873	-0.0036016	0.00062678	0.00075972	NaN	21.835	403	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65078	+		21119	12265	12184	12538							-0.04781128753847952
QHHQCDPLV	9	Unmodified						0	0	0			REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.750733	1075.48691	1.6769	0.00090343	-9.4749	-0.0051046	-7.798	-0.0042012	538.746716349134	18.65	0.23994	18.636	18.54	18.78	-0.014061	1290	97	0.84311575	0.059010506	0.8415963	342.02747		23.938873	0.0036016	-0.00072908	-0.00075972	NaN	21.835	418	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55957	+		21120	12265	12184	12538							-0.04781128753847952
QHIYGTIDW	9	Unmodified	_QHIYGTIDW_					0	0	0			REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1	REV__nc|ENSG00000145990|Q9NXC2-3|GFOD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378001	2	566.774731	1131.53491	1.3774	0.00078067	0.0023288	1.3199E-06	1.3797	0.00078199	566.774111308992	36.758	0.14438	36.759	36.687	36.832	0.0016747	1233	40	0.87812483	0.023925126	0.8766054	356.00635	0	9.699646						122	7	3	NaN	NaN	NaN	0.59509	1	13688	13688		5.6942	1.7256	1	6709.6	+		21121	13137	12185	12539	16736	16736					-0.025597315621325833
QHKMEELKEGL	11	Unmodified	_QHKMEELKEGL_					0	0	0		nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.34519430395	2	671.345194	1340.67584	0.96056	0.00064486	0.53748	0.00036084	1.498	0.0010057	671.8468718694891	37.528	0.12048	37.53	37.458	37.579	0.0028229	1188	64	0.90571284	0.038602352	0.9041934	366.50067	0	15.620636						245	6	4	NaN	NaN	NaN	0.76654	1	18555	18555		2.5994	0.26131	1	16706			21122	1111	12186	12540	16737	16737					0.019124790289652083
QHLLSTEKM	9	Unmodified	_QHLLSTEKM_					0	0	0			REV__ENST00000581487.1_1_16:66655025-66655589:-|nuORF	REV__ENST00000581487.1_1_16:66655025-66655589:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7842412791	2	543.784241	1085.55393	2.2851	0.0012426	-7.006	-0.0038097	-4.7209	-0.0025672	543.7809304204039	23.802	0.024136	23.789	23.789	23.813	-0.013048	1266	40	0.85786515	0.023958802	0.8563457	347.97006	0	9.718231						40	2	2	NaN	NaN	NaN	0.44082	1	11888	11888		12.049	2.3027	1	3633.6	+		21123	12868	12187	12541	16738	16738					0.0145748173724769
QHMLANSISDF	11	Unmodified	_QHMLANSISDF_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.7953372816501	2	631.795337	1261.57612	1.1087	0.00070049	-7.1869	-0.0045407	-6.0782	-0.0038402	631.7909837268706	21.103	0.21674	21.089	21.017	21.234	-0.014004	1143	79	0.9332562	0.04773408	0.93173677	377.88773	0	19.328156						265	10	2	NaN	NaN	NaN	0.65577	1	17245	17245		10.36	3.3758	1	37118			21124	1378	12188	12542	16739	16739					-0.04420338584986894
QHSRRPEPTL	10	Unmodified	_QHSRRPEPTL_					0	0	0		ENST00000558100.1_1_15:52311447-52334953:+|nuORF;ENST00000261845.6_1_15:52311447-52338038:+|nuORF	ENST00000558100.1_1_15:52311447-52334953:+|nuORF	ENST00000558100.1_1_15:52311447-52334953:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8283603570501	2	610.82836	1219.64217	0.63666	0.00038889	2.8659	0.0017506	3.5026	0.0021395	610.8288577515125	28.821	0.12066	28.813	28.765	28.885	-0.0083504	1158	49	0.92408	0.02936846	0.9225606	374.3114	0	11.896118						166	6	3	NaN	NaN	NaN	0.5626	1	16290	16290		16.858	1.0364	1	24364			21125	6306	12189	12543	16740	16740					0.04113238372087835
QHTHFTLN	8	Unmodified	_QHTHFTLN_					0	0	0		nc|ENSG00000259527|Q96N35|LINC00052	nc|ENSG00000259527|Q96N35|LINC00052	nc|ENSG00000259527|Q96N35|LINC00052	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.2461405738501	2	499.246141	996.477728	1.2311	0.00061463	-3.2565	-0.0016258	-2.0254	-0.0010112	499.24505358703595	21.007	0.07218	20.993	20.945	21.017	-0.014086	1338	40	0.81357855	0.024018466	0.8120591	330.3758	0	9.753357						53	4	2	NaN	NaN	NaN	0.81756	1	8269	8269		6.8632	0.613	1	4652.1			21126	8052	12190	12544	16741	16741					-0.020651540478411334
QHWMLTGGAGE	11	Unmodified	_QHWMLTGGAGE_					0	0	0			REV__ENST00000352767.7_2_3:184032446-184033585:+|nuORF	REV__ENST00000352767.7_2_3:184032446-184033585:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.7691225311502	2	593.769123	1185.52369	1.3379	0.00079439	-7.7574	-0.0046061	-6.4195	-0.0038117	593.7638607528331	29.16	0.26542	29.16	29.039	29.305	0	1197	88	0.9001988	0.053319573	0.9001988	364.75543	0	21.604767						702	12	4	NaN	NaN	NaN	0.50669	1	16017	16017		18.233	2.7708	1	116250	+		21127	11807	12191	12545	16742	16742					-0.0616487692791452
QHWMLTGGAGE	11	Unmodified						0	0	0			REV__ENST00000352767.7_2_3:184032446-184033585:+|nuORF	REV__ENST00000352767.7_2_3:184032446-184033585:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.769123	1185.52369	1.3379	0.00079439	-7.7574	-0.0046061	-6.4195	-0.0038117	593.7638607528331	29.16	0.26542	29.16	29.039	29.305	0	1197	88	0.9001988	0.053319573	0.9001988	364.75543		21.604767	-0.0078152	-0.00066619	-0.00015938	NaN	18.233	702	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116250	+		21128	11807	12191	12545							-0.0616487692791452
QHYCVGNRY	9	Unmodified	_QHYCVGNRY_					0	0	0			REV__ENSG00000160472|ENST00000291934|TMEM190	REV__ENSG00000160472|ENST00000291934|TMEM190	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.2561823314	2	570.256182	1138.49781	1.9936	0.0011369	-5.0201	-0.0028627	-3.0264	-0.0017258	570.7542084286864	17.405	0.11997	17.405	17.357	17.477	0	1233	79	0.87812483	0.047873557	0.87812483	355.98016	0	19.407288						269	6	4	NaN	NaN	NaN	0.45297	1	14386	14386		11.548	4.0081	1	25672	+		21129	10205	12192	12546	16743	16743					-0.06589726379547756
QHYCVGNRY	9	Unmodified						0	0	0			REV__ENSG00000160472|ENST00000291934|TMEM190	REV__ENSG00000160472|ENST00000291934|TMEM190	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.256182	1138.49781	1.9936	0.0011369	-5.0201	-0.0028627	-3.0264	-0.0017258	570.7542084286864	17.405	0.11997	17.405	17.357	17.477	0	1233	79	0.87812483	0.047873557	0.87812483	355.98016		19.407288	-0.03955	-0.0013931	0.0016801	NaN	11.548	269	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25672	+		21130	10205	12192	12546							-0.06589726379547756
QIAKYWEL	8	Unmodified	_QIAKYWEL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.C147Afs*45|1|0.32|ENSG00000117139|chr1:202773255-202773255|A/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5618580185999	1	1050.56186	1049.55458	1.3341	0.0014016	8.2266	0.0086425	9.5607	0.010044	1050.5705770937934	31.089	0.1448	31.084	31.06	31.205	-0.0050716	90	70	1.5652816	0.04064727	1.5637622	317.59763	0	8.247406						137	7	2	NaN	NaN	NaN	0.78264	1	10404	10404		11.548	1.8025	1	17737			21131	2129	12193	12547	16744	16744					0.031786444485987886
QICVTSYLL	9	Unmodified	_QICVTSYLL_					0	0	0			REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2782604442	2	520.27826	1038.54197	1.2116	0.00063036	-4.5565	-0.0023707	-3.3449	-0.0017403	520.2758941229376	30.825	0.28956	30.825	30.753	31.042	0	1269	67	0.8560222	0.04055661	0.8560222	347.4194	0	16.460022						373	13	5	NaN	NaN	NaN	0.10363	1	10142	10142		35.296	0.85769	1	82551	+		21132	11539	12194	12548	16745	16745					0.024238649940571122
QICVTSYLL	9	Unmodified						0	0	0			REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.27826	1038.54197	1.2116	0.00063036	-4.5565	-0.0023707	-3.3449	-0.0017403	520.2758941229376	30.825	0.28956	30.825	30.753	31.042	0	1269	67	0.8560222	0.04055661	0.8560222	347.4194		16.460022	0.015495	0.00019026	-0.00016177	NaN	35.296	373	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82551	+		21133	11539	12194	12548							0.024238649940571122
QICVTSYLL	9	Unmodified						0	0	0			REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	REV__ENST00000260408.7_1_15:58904136-58913675:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.27826	1038.54197	1.2796	0.00066575	-4.8568	-0.0025269	-3.5772	-0.0018612	520.2757379386956	30.8	0.24129	30.794	30.698	30.939	-0.0057545	1266	73	0.85786515	0.044238746	0.8563457	348.1674		17.954437	-0.015495	-0.00012223	0.00016177	NaN	35.296	444	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104630	+		21134	11539	12194	12548							0.024238649940571122
QIDMALVM	8	Unmodified	_QIDMALVM_					0	0	0		nc|ENSG00000197713|Q96AT9-5|RPE;nc|ENSG00000197713|Q96AT9-3|RPE;nc|ENSG00000197713|Q96AT9-4|RPE;nc|ENSG00000197713|Q96AT9-2|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4579865735001	1	920.457987	919.45071	1.5648	0.0014403	-0.78288	-0.00072061	0.78189	0.0007197	920.4581655265828	27.567	0.16892	27.567	27.519	27.688	0	342	73	1.4161754	0.04280579	1.4161754	287.87076	0	8.701263						243	8	4	NaN	NaN	NaN	0.5868	1	6401	6401		26.115	5.5595	1	30268			21135	5724	12195	12549	16746	16746					-0.012237219749067663
QIDPLECV	8	Unmodified	_QIDPLECV_					0	0	0		ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENSG00000064309|ENST00000531738|CDON	ENSG00000064309|ENST00000531738|CDON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4444449993	1	916.444445	915.437169	1.522	0.0013948	-4.8935	-0.0044846	-3.3715	-0.0030898	916.4399951250496	30.511	0.048281	30.511	30.487	30.535	0	351	43	1.4108255	0.024970055	1.4108255	286.80185	0	5.0760803						59	3	2	NaN	NaN	NaN	0.81251	1	6324	6324		7.5404	2.6306	1	4753.8			21136	666	12196	12550	16747	16747					-0.023932564825031477
QIDPLECV	8	Unmodified	_QIDPLECV_					0	0	0		ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENSG00000064309|ENST00000531738|CDON	ENSG00000064309|ENST00000531738|CDON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4444449993	1	916.444445	915.437169	1.3452	0.0012328	-4.1917	-0.0038414	-2.8465	-0.0026087	916.4402801669326	30.486	0.096523	30.48	30.456	30.553	-0.0057545	348	49	1.412609	0.028534174	1.4110895	287.1644	0	5.8006287						89	5	2	NaN	NaN	NaN	0.69898	1	6207	6207		19.118	1.3193	1	7307.1			21137	666	12196	12550	16748	16748					-0.023932564825031477
QIEEMFSSF	9	Unmodified	_QIEEMFSSF_					0	0	0			REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1117.4870380954999	1	1117.48704	1116.47976	1.311	0.001465	-1.743	-0.0019478	-0.43202	-0.00048277	1117.4853993064578	33.262	0.19308	33.262	33.238	33.431	0	120	97	1.5476005	0.05658567	1.5476005	313.7658	0	11.472382						340	9	3	NaN	NaN	NaN	0.032826	1	13518	13518		55.413	18.111	1	32269	+		21138	12143	12197	12551	16749	16749					-0.07381906144928507
QIEEMFSSF	9	Unmodified						0	0	0			REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1117.48704	1116.47976	1.311	0.001465	-1.743	-0.0019478	-0.43202	-0.00048277	1117.4853993064578	33.262	0.19308	33.262	33.238	33.431	0	120	97	1.5476005	0.05658567	1.5476005	313.7658		11.472382	-0.01017	0.00021398	-0.00012476	NaN	55.413	340	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32269	+		21139	12143	12197	12551							-0.07381906144928507
QIEEMFSSF	9	Unmodified						0	0	0			REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	REV__ENST00000429404.1_1_10:60897597-60897936:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1117.48704	1116.47976	0.81698	0.00091297	-2.0943	-0.0023404	-1.2773	-0.0014274	1117.4843692461684	33.285	0.21717	33.283	33.235	33.452	-0.0024757	117	100	1.5493695	0.058338642	1.54785	314.12445		11.827759	0.01017	-0.0001786	0.00012476	NaN	55.413	316	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28429	+		21140	12143	12197	12551							-0.07381906144928507
QIFFFELVK	9	Unmodified	_QIFFFELVK_					0	0	0		ENST00000216277.12_1_14:97032044-97032281:+|nuORF	ENST00000216277.12_1_14:97032044-97032281:+|nuORF	ENST00000216277.12_1_14:97032044-97032281:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8315174352	2	585.831517	1169.64848	1.078	0.00063154	3.1232	0.0018297	4.2012	0.0024612	585.8328878329596	33.383	0.072407	33.383	33.359	33.431	0	1185	28	0.90755045	0.016540289	0.90755045	367.79163	0	6.7030945						73	4	3	NaN	NaN	NaN	0.31737	1	15486	15486		17.799	3.7574	1	9827.9			21141	6227	12198	12552	16750	16750					0.07044363550880917
QIHLFSEPQF	10	Unmodified	_QIHLFSEPQF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.316762828	2	623.316763	1244.61897	1.3577	0.00084625	-3.3672	-0.0020989	-2.0096	-0.0012526	623.3143690201185	26.191	0.19303	26.18	26.107	26.3	-0.011137	1134	58	0.9387595	0.034854412	0.93724006	380.17215	0	14.115082						209	9	3	NaN	NaN	NaN	0.10101	1	16888	16888		45.827	22.709	1	37873			21142	1865	12199	12553	16751	16751					0.006447995347571123
QIHLFSEPQF	10	Unmodified						0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.316763	1244.61897	1.978	0.0012329	-3.4016	-0.0021203	-1.4236	-0.00088735	623.314322610904	26.191	0.19306	26.191	26.094	26.288	0	1137	58	0.9369253	0.034858167	0.9369253	379.42932		14.116608	0.005674	-2.4458E-05	-0.0001574	NaN	45.827	261	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35154			21143	1865	12199	12553							0.006447995347571123
QIIEADEVL	9	Unmodified	_QIIEADEVL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5462675339	1	1029.54627	1028.53899	2.3568	0.0024264	-1.282	-0.0013199	1.0748	0.0011065	1029.5450919269797	26.336	0.16893	26.336	26.312	26.481	0	201	115	1.4997677	0.0674597	1.4997677	304.38544	0	13.691284						477	8	5	NaN	NaN	NaN	2.6074E-07	1	9722	9722		131.88	64.723	1	129750			21144	3893	12200	12554	16752	16752					0.02586313140909624
QIIEADEVL	9	Unmodified	_QIIEADEVL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5462675339	1	1029.54627	1028.53899	1.7742	0.0018266	-0.30097	-0.00030986	1.4732	0.0015168	1029.545472232918	26.36	0.16891	26.349	26.3	26.469	-0.011135	201	118	1.4997677	0.06923127	1.4982482	304.38544	0	14.050842						448	8	4	NaN	NaN	NaN	6.1965E-18	1	9523	9523		158.26	71.237	1	125000			21145	3893	12200	12554	16753	16753					0.02586313140909624
QIIEEDAAL	9	Unmodified	_QIIEEDAAL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5149674055	1	1001.51497	1000.50769	2.496	0.0024998	-1.109	-0.0011107	1.387	0.0013891	1001.5143622617359	23.345	0.21707	23.345	23.296	23.513	0	237	121	1.4784646	0.07111585	1.4784646	300.1731	0	14.43869						588	10	5	NaN	NaN	NaN	0.00017726	1	8610	8610		118.2	18.218	1	238060			21146	1916	12201	12555	16754	16754					0.007457401068108993
QIIEEDAAL	9	Unmodified	_QIIEEDAAL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5149674055	1	1001.51497	1000.50769	2.3875	0.0023911	0.31512	0.0003156	2.7026	0.0027067	1001.5154193959252	23.368	0.28954	23.355	23.307	23.596	-0.013294	237	133	1.4784646	0.078235745	1.4769452	300.17307	0	15.884247						589	13	5	NaN	NaN	NaN	9.7712E-12	1	8444	8444		144.65	26.445	1	230460			21147	1916	12201	12555	16755	16755					0.007457401068108993
QIIEKDAAL	9	Unmodified	_QIIEKDAAL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.7873068968	2	500.787307	999.560061	1.6957	0.00084917	-0.54945	-0.00027516	1.1462	0.00057401	500.7870008750867	17.882	0.11996	17.868	17.844	17.964	-0.013786	1293	82	0.84127116	0.049782038	0.8397517	341.60678	0	20.214508						263	6	4	NaN	NaN	NaN	0.2345	1	8404	8404		23.118	2.6689	1	34543			21148	3892	12202	12556	16756	16756					0.060263232404167866
QIIEKDAAL	9	Unmodified						0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.787307	999.560061	2.0915	0.0010474	-2.4028	-0.0012033	-0.31135	-0.00015592	500.7863018357474	17.861	0.095903	17.861	17.837	17.933	0	1293	88	0.84127116	0.05347544	0.84127116	341.60678		21.714233	-0.0035175	-0.0011017	0.00075972	NaN	23.118	216	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34908			21149	3892	12202	12556							0.060263232404167866
QIKKVPIRSQG	11	Unmodified	_QIKKVPIRSQG_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.38805378415	2	627.388054	1252.76155	1.3291	0.00083385	-8.1971	-0.0051428	-6.868	-0.0043089	627.3841553528964	39.042	0.14465	39.047	38.999	39.143	0.0046806	1185	121	0.90755045	0.073587954	0.906031	367.50714	0	29.799011						273	7	6	NaN	NaN	NaN	0.74794	1	17087	17087		4.3102	0	1	151970	+		21150	10023	12203	12557	16757	16757					0.14528431996768632
QILMEHIH	8	Unmodified	_QILMEHIH_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5295120327002	1	1020.52951	1019.52224	2.0228	0.0020644	-2.7071	-0.0027627	-0.68425	-0.00069829	1020.5267956715758	31.766	0.1931	31.766	31.646	31.839	0	189	82	1.5068626	0.047873378	1.5068626	305.86118	0	9.717285						236	9	2	NaN	NaN	NaN	0.74229	1	9346	9346		16.417	1.2413	1	49971			21151	6978	12204	12558	16758	16758					0.013255337739678907
QINDCSSEL	9	Unmodified	_QINDCSSEL_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.71876398235	2	504.718764	1007.42298	1.16	0.0005855	2.9468	0.0014873	4.1069	0.0020728	505.22106872705785	34.107	0.072399	34.107	34.083	34.155	0	1497	31	0.71537006	0.018581212	0.71537006	290.45255	0	7.544281						79	4	3	NaN	NaN	NaN	0.53317	1	8864	8864		8.2448	0.70444	1	5336.7	+		21152	8807	12205	12559	16759	16759					-0.08043953701439932
QINDCSSEL	9	Unmodified						0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	504.718764	1007.42298	1.16	0.0005855	2.9468	0.0014873	4.1069	0.0020728	505.22106872705785	34.107	0.072399	34.107	34.083	34.155	0	1497	31	0.71537006	0.018581212	0.71537006	290.45255		7.544281	0.001237	0.0012827	-0.00016939	NaN	8.2448	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5336.7	+		21153	8807	12205	12559							-0.08043953701439932
QINPEVELN	9	Unmodified	_QINPEVELN_					0	0	0			REV__ENST00000425226.1_1_2:203706028-203706388:-|nuORF	REV__ENST00000425226.1_1_2:203706028-203706388:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2720209733501	2	528.272021	1054.52949	1.764	0.00093187	-1.4745	-0.00077896	0.28946	0.00015291	528.2717758190599	26.456	0.12066	26.456	26.432	26.553	0	1269	61	0.8560222	0.036861658	0.8560222	347.35046	0	14.957428						140	6	2	NaN	NaN	NaN	0.51576	1	10837	10837		8.962	0	1	21940	+		21154	12127	12206	12560	16760	16760					0.0044054485538254085
QIPDQFEKVDL	11	Unmodified	_QIPDQFEKVDL_					0	0	0		ENST00000342355.8_1_11:30965860-31263019:-|nuORF;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	ENST00000342355.8_1_11:30965860-31263019:-|nuORF	ENST00000342355.8_1_11:30965860-31263019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3457172327	2	666.345717	1330.67688	1.2878	0.00085809	-5.5195	-0.0036779	-4.2318	-0.0028198	666.3425986802505	35.82	0.24121	35.82	35.675	35.916	0	1083	49	0.9699114	0.029292583	0.9699114	392.509	0	11.854279						331	11	4	NaN	NaN	NaN	0.21983	1	19264	19264		28.495	1.4488	1	38860			21155	4758	12207	12561	16761	16761					0.02477016669513432
QIPDQFEKVDL	11	Unmodified						0	0	0		ENST00000342355.8_1_11:30965860-31263019:-|nuORF;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	ENST00000342355.8_1_11:30965860-31263019:-|nuORF	ENST00000342355.8_1_11:30965860-31263019:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	666.345717	1330.67688	2.222	0.0014806	-0.10789	-7.1893E-05	2.1141	0.0014087	666.3462574936551	35.794	0.072266	35.794	35.722	35.794	0.00052643	1080	37	0.9717421	0.021967113	0.97022265	393.24985		8.88974	-0.012555	0.0060272	0.00015562	NaN	28.495	39	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2383.6			21156	4758	12207	12561							0.02477016669513432
QIPEKKAS	8	Unmodified	_QIPEKKAS_					0	0	0			REV__ENSG00000103528|ENST00000355377|SYT17	REV__ENSG00000103528|ENST00000355377|SYT17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.7610921463	2	450.761092	899.507631	1.1556	0.00052089	6.2927	0.0028365	7.4482	0.0033574	450.7626036837442	55.893	0.096058	55.893	55.845	55.941	0	1329	52	0.81912065	0.031398535	0.81912065	333.1141	0	12.768951						155	5	3	NaN	NaN	NaN	0.8439	1	6064	6064		3.1533	1.483	1	20927	+		21157	8919	12208	12562	16762	16762					0.053857848974644185
QIPEKKAS	8	Unmodified						0	0	0			REV__ENSG00000103528|ENST00000355377|SYT17	REV__ENSG00000103528|ENST00000355377|SYT17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	450.761092	899.507631	1.1556	0.00052089	6.2927	0.0028365	7.4482	0.0033574	450.7626036837442	55.893	0.096058	55.893	55.845	55.941	0	1329	52	0.81912065	0.031398535	0.81912065	333.1141		12.768951	0.001427	-0.00084079	0.00075972	NaN	3.1533	155	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20927	+		21158	8919	12208	12562							0.053857848974644185
QIPEKKAS	8	Unmodified						0	0	0			REV__ENSG00000103528|ENST00000355377|SYT17	REV__ENSG00000103528|ENST00000355377|SYT17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	450.761092	899.507631	-0.65258	-0.00029416	7.9718	0.0035934	7.3193	0.0032992	450.7645652811947	55.891	0.072014	55.89	55.866	55.938	-0.00059128	1329	46	0.81912065	0.027704597	0.8176012	333.1141		11.266724	-0.001427	0.00067302	-0.00075972	NaN	3.1533	129	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14405	+		21159	8919	12208	12562							0.053857848974644185
QIPELPDPSL	10	Unmodified	_QIPELPDPSL_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7978715831	2	554.797872	1107.58119	1.316	0.00073011	-1.5743	-0.00087344	-0.25834	-0.00014333	554.7970297468147	28.484	0.14483	28.484	28.412	28.556	0	1245	55	0.87076044	0.03315395	0.87076044	353.1126	0	13.444672						160	7	2	NaN	NaN	NaN	0.12158	1	13185	13185		42.995	21.224	1	26688			21160	1349	12209	12563	16763	16763					0.031702885492677524
QIPELPDPSL	10	Unmodified	_QIPELPDPSL_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7978715831	2	554.797872	1107.58119	1.0758	0.00059684	-1.4898	-0.00082653	-0.414	-0.00022969	554.7963508962824	28.483	0.16893	28.475	28.403	28.572	-0.0083504	1245	55	0.87076044	0.03315395	0.869241	353.1126	0	13.444672						168	8	2	NaN	NaN	NaN	0.24484	1	12811	12811		31.675	13.876	1	26653			21161	1349	12209	12563	16764	16764					0.031702885492677524
QIPQVLNQVSG	11	Unmodified	_QIPQVLNQVSG_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8274946898	2	591.827495	1181.64044	1.4676	0.00086854	-6.1344	-0.0036305	-4.6668	-0.002762	592.324295252841	24.888	0.16894	24.888	24.816	24.985	0	1167	49	0.91857195	0.029377997	0.91857195	372.21417	0	11.904236						220	8	3	NaN	NaN	NaN	0.62211	1	15889	15889		12.57	0.52101	1	47969			21162	5923	12210	12564	16765	16765					0.056881845634507044
QIPTIKNS	8	Unmodified	_QIPTIKNS_					0	0	0			REV__ENSG00000162433|ENST00000327299|AK4	REV__ENSG00000162433|ENST00000327299|AK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.7610921463	2	450.761092	899.507631	-0.65258	-0.00029416	7.9718	0.0035934	7.3193	0.0032992	450.7645652811947	55.891	0.072014	55.89	55.866	55.938	-0.00059128	1329	46	0.81912065	0.027704597	0.8176012	333.1141	0	11.266724						129	4	3	NaN	NaN	NaN	0.8439	1	5950	5950		3.1533	0.69183	1	14405	+		21163	10236	12211	12565	16766	16766					0.053857848974644185
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.80549964995004	2	500.8055	999.596446	1.8729	0.00093796	-3.0252	-0.0015151	-1.1523	-0.0005771	500.8043984289833	18.482	0.072002	18.468	18.444	18.516	-0.01395	1287	37	0.8449601	0.022131324	0.84344065	343.10455	0	8.986633						89	4	3	NaN	NaN	NaN	0.49999	1	8410	8410		9.6116	0.69255	1	9204.3			21164	1157	12212	12566	16767	16767					0.09663200137140393
QITLLLTFK	9	Unmodified	_QITLLLTFK_					0	0	0			REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.8393424673001	2	538.839342	1075.66413	3.0557	0.0016465	-8.9078	-0.0047999	-5.8521	-0.0031534	538.8345824855572	21.44	0.096428	21.426	21.426	21.523	-0.014006	1233	31	0.87812483	0.018406928	0.8766054	356.22888	0	7.4671326						27	5	2	NaN	NaN	NaN	0.64666	1	11497	11497		3.5698	0	1	1410	+		21165	12084	12213	12567	16768	16768					0.12932650067932627
QITLLLTFK	9	Unmodified						0	0	0			REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.839342	1075.66413	1.5126	0.00081502	-11.926	-0.0064261	-10.413	-0.0056111	539.3336873825898	21.151	0.21679	21.151	21.079	21.296	0	1242	40	0.87260187	0.02393806	0.87260187	353.9884		9.710968	-0.13746	-0.0016407	-0.0020018	NaN	3.5698	186	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22647	+		21166	12084	12213	12567							0.12932650067932627
QITLLLTFK	9	Unmodified						0	0	0			REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	REV__ENST00000414487.6_1_1:203839149-203839239:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.839342	1075.66413	3.0557	0.0016465	-8.9078	-0.0047999	-5.8521	-0.0031534	538.8345824855572	21.44	0.096428	21.426	21.426	21.523	-0.014006	1233	31	0.87812483	0.018406928	0.8766054	356.22888		7.4671326	0.13746	0.0016117	0.0020018	NaN	3.5698	27	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1410	+		21167	12084	12213	12567							0.12932650067932627
QIVQHIRLIDD	11	Unmodified	_QIVQHIRLIDD_					0	0	0			REV__tr|U7STX3|U7STX3_FUSNUFormimidoylglutamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutGPE=3SV=1	REV__tr|U7STX3|U7STX3_FUSNUFormimidoylglutamaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutGPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3804257173	2	675.380426	1348.7463	0.4878	0.00032945	0.4333	0.00029265	0.9211	0.00062209	675.3799489726904	31.428	0.048277	31.428	31.404	31.452	0	1101	34	0.95892316	0.020150542	0.95892316	388.00876	0	8.153503						74	3	3	NaN	NaN	NaN	0.67772	1	19534	19534		8.9191	2.4892	1	7694.5	+		21168	13503	12214	12568	16769	16769					0.0858752040892341
QIYSNLKYN	9	Unmodified	_QIYSNLKYN_					0	0	0		ENSG00000016402|ENST00000316649|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA;nc|ENSG00000016402|Q9UHF4-2|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7956632451501	2	571.795663	1141.57677	1.8309	0.0010469	-0.28165	-0.00016104	1.5493	0.00088587	571.7954183978472	16.782	0.16785	16.782	16.758	16.925	0	1188	43	0.90571284	0.02573073	0.90571284	367.1521	0	10.4305725						158	8	3	NaN	NaN	NaN	0.33629	1	14522	14522		16.584	1.1215	1	16513			21169	446	12215	12569	16770	16770					0.011648241263856107
QIYSNLKYN	9	Unmodified						0	0	0		ENSG00000016402|ENST00000316649|IL20RA;nc|ENSG00000016402|Q9UHF4-3|IL20RA;nc|ENSG00000016402|Q9UHF4-2|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	ENSG00000016402|ENST00000316649|IL20RA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.795663	1141.57677	1.3961	0.00079829	-0.86751	-0.00049604	0.5286	0.00030225	571.7944843184488	16.874	0.14381	16.861	16.813	16.957	-0.013294	1191	40	0.90387505	0.023891509	0.9023556	366.4071		9.684998	0.03966	-0.0003832	-0.0016786	NaN	16.584	160	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17375			21170	446	12215	12569							0.011648241263856107
QKAEFYPTME	10	Unmodified	_QKAEFYPTME_					0	0	0			REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.2868137577999	2	622.286814	1242.55907	1.3854	0.00086209	-2.3892	-0.0014867	-1.0038	-0.00062465	622.2850344764985	23.875	0.096441	23.875	23.851	23.947	0	1185	58	0.90755045	0.034925938	0.90755045	367.54	0	14.144318						124	5	2	NaN	NaN	NaN	0.73444	1	17586	17586		5.6942	0.96509	1	15408	+		21171	13515	12216	12570	16771	16771					-0.052502591908250906
QKAEFYPTME	10	Unmodified						0	0	0			REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.286814	1242.55907	1.3854	0.00086209	-2.3892	-0.0014867	-1.0038	-0.00062465	622.2850344764985	23.875	0.096441	23.875	23.851	23.947	0	1185	58	0.90755045	0.034925938	0.90755045	367.54		14.144318	-0.0054315	0.00051146	0.00075972	NaN	5.6942	124	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15408	+		21172	13515	12216	12570							-0.052502591908250906
QKAEFYPTME	10	Unmodified						0	0	0			REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	REV__tr|U7SUE2|U7SUE2_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01200PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.286814	1242.55907	1.0756	0.00066933	-3.3533	-0.0020867	-2.2777	-0.0014174	622.2854110884646	23.899	0.19289	23.886	23.789	23.982	-0.01305	1185	67	0.90755045	0.04042965	0.906031	367.54		16.3732	0.0054315	-0.00068843	-0.00075972	NaN	5.6942	168	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18020	+		21173	13515	12216	12570							-0.052502591908250906
QKAPSGLV	8	Unmodified	_QKAPSGLV_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.4672293519002	1	799.467229	798.459953	2.0204	0.0016152	1.5317	0.0012246	3.5521	0.0028398	799.468309267878	55.845	0.048023	55.845	55.821	55.869	0	522	46	1.3088527	0.026915193	1.3088527	266.64886	0	5.4833374						58	3	2	NaN	NaN	NaN	0.84887	1	4738	4738		0.32989	0	1	5216.8			21174	5181	12217	12571	16772	16772					0.05266130697293647
QKENELKSN	9	Unmodified	_QKENELKSN_					0	0	0			REV__ENSG00000107890|ENST00000376087|ANKRD26;REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2803773217	2	545.280377	1088.5462	1.4429	0.00078676	-10.792	-0.0058849	-9.3496	-0.0050982	545.2762743510189	27.833	0.072376	27.833	27.808	27.881	0	1236	52	0.876284	0.031300247	0.876284	355.42896	0	12.695679						87	4	2	NaN	NaN	NaN	0.66822	1	12319	12319		1.9246	0	1	11054	+		21175	9023;13105	12218	12572	16773	16773					0.005470457413366603
QKGAAAVG	8	Unmodified	_QKGAAAVG_					0	0	0			REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3940644088001	1	701.394064	700.386788	1.1981	0.00084031	-0.87254	-0.00061199	0.32552	0.00022832	701.3933568217969	28.436	0.096539	28.436	28.388	28.484	0	702	52	1.2008407	0.030703306	1.2008407	245.22223	0	6.2698975						123	5	2	NaN	NaN	NaN	0.84876	1	3227	3227		0.39566	0	1	18332	+		21176	12181	12219	12573	16774	16774					0.024610019746660328
QKGAAAVG	8	Unmodified	_QKGAAAVG_					0	0	0			REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	351.2006704377	2	351.20067	700.386788	2.1217	0.00074514	-6.73	-0.0023636	-4.6083	-0.0016184	351.1982696710126	28.411	0.09655	28.402	28.378	28.474	-0.0089798	1392	28	0.780288	0.016662419	0.77876854	318.6746	0	6.8050537						56	5	2	NaN	NaN	NaN	0.84887	1	3166	3166		0.32989	0	1	3403.7	+		21177	12181	12219	12573	16775	16775					0.024610019746660328
QKGAAAVG	8	Unmodified						0	0	0			REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	REV__ENST00000436893.1_1_X:38660915-38663110:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	701.394064	700.386788	1.1981	0.00084031	-0.87254	-0.00061199	0.32552	0.00022832	701.3933568217969	28.436	0.096539	28.436	28.388	28.484	0	702	52	1.2008407	0.030703306	1.2008407	245.22223		6.2698975	0.0048218	-0.00026813	-0.00014322	NaN	0.39566	123	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18332	+		21178	12181	12219	12573							0.024610019746660328
QKGGAAGF	8	Unmodified	_QKGGAAGF_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3784143446001	1	735.378414	734.371138	1.3761	0.0010119	-10.665	-0.0078426	-9.2887	-0.0068307	735.3713483454388	45.694	0.14416	45.694	45.646	45.79	0	672	55	1.2188909	0.03246939	1.2188909	248.68729	0	6.6246643						161	7	3	NaN	NaN	NaN	0.84887	1	3817	3817		0.32989	0	1	30416			21179	5745	12220	12574	16776	16776					-0.006672845423850049
QKGKWRVRAR	10	Unmodified	_QKGKWRVRAR_					0	0	0		ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.8916293158501	2	642.891629	1283.76871	3.063	0.0019692	-11.294	-0.0072607	-8.2308	-0.0052915	642.8847732007852	17.546	0.072048	17.532	17.484	17.556	-0.013567	1119	28	0.9479278	0.01649928	0.94640833	383.75662	0	6.679535						49	4	2	NaN	NaN	NaN	0.77928	1	17674	17674		0.69115	0.46101	1	3252.7			21180	7552	12221	12575	16777	16777					0.1381720938786657
QKHGGGGG	8	Unmodified	_QKHGGGGG_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3376121624002	1	697.337612	696.330336	0.70765	0.00049347	4.9357	0.0034418	5.6433	0.0039353	697.3408929087772	35.022	0.16891	35.022	34.974	35.143	-4.5776E-05	720	58	1.1900014	0.03433752	1.1884819	243.03586	0	7.0128174						157	8	2	NaN	NaN	NaN	0.84945	1	3098	3098		0	0	1	16691			21181	5119	12222	12576	16778	16778					-0.02997625861985398
QKHQRGQIHLV	11	Unmodified	_QKHQRGQIHLV_					0	0	0		LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3863767624501	2	672.386377	1342.7582	1.0546	0.00070912	-11.018	-0.0074083	-9.9633	-0.0066992	672.8804746516954	40.438	0.072109	40.445	40.445	40.517	0.0067558	1185	37	0.90755045	0.022047758	0.906031	367.2385	0	8.9216						67	4	2	NaN	NaN	NaN	0.77843	1	18594	18594		0.51604	0.13095	1	6593			21182	7861	12223	12577	16779	16779					0.10053181942794254
QKKRPRNTSE	10	Unmodified	_QKKRPRNTSE_					0	0	0			REV__ENSG00000138442|ENST00000261015|WDR12	REV__ENSG00000138442|ENST00000261015|WDR12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.34691725095	2	622.346917	1242.67928	-0.84357	-0.00052499	-3.116	-0.0019392	-3.9596	-0.0024642	622.3449190043928	54.546	0.09642	54.545	54.497	54.593	-0.00061798	852	85	1.1102993	0.050795674	1.1087799	449.64883	0	20.571198						99	5	2	NaN	NaN	NaN	0.77928	1	16861	16861		0.69115	0.093923	1	12324	+		21183	9729	12224	12578	16780	16780					0.06764909917842488
QKLAGCGG	8	Unmodified	_QKLAGCGG_					0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.3661350988002	1	733.366135	732.358859	1.586	0.0011631	2.0424	0.0014979	3.6285	0.002661	733.3677506607191	44.568	0.55161	44.568	44.448	44.999	0	693	478	1.2062578	0.28921133	1.2062578	246.12213	0	59.010025						1140	24	3	NaN	NaN	NaN	0.84876	1	3790	3790		0.39566	0	1	263690			21184	7781	12225	12579	16781	16781					-0.018026442770633366
QKLAGCGG	8	Unmodified						0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	733.366135	732.358859	0.66958	0.00049104	3.348	0.0024553	4.0176	0.0029463	733.3689577105262	44.518	0.52752	44.529	44.433	44.961	0.011646	690	421	1.2080631	0.25439078	1.2065437	246.49048		51.905304	-0.01913	0.00050717	0.00014293	NaN	0.39566	1179	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232400			21185	7781	12225	12579							-0.018026442770633366
QKLGPGVI	8	Unmodified	_QKLGPGVI_					0	0	0		ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.5036148582002	1	811.503615	810.496338	2.0395	0.001655	-1.3956	-0.0011325	0.64386	0.0005225	811.5024576350986	57.189	0.072144	57.189	57.165	57.237	0	426	55	1.3661768	0.03218651	1.3661768	278.25748	0	6.555603						105	4	3	NaN	NaN	NaN	0.84876	1	4903	4903		0.39566	0	1	11929			21186	6573	12226	12580	16782	16782					0.08351007594001203
QKLGPGVI	8	Unmodified	_QKLGPGVI_					0	0	0		ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.5036148582002	1	811.503615	810.496338	-0.13684	-0.00011105	0.69624	0.000565	0.5594	0.00045396	811.5038438533585	57.187	0.12014	57.186	57.162	57.282	-0.00053787	423	55	1.3679651	0.03218651	1.3664457	278.62167	0	6.555603						93	6	2	NaN	NaN	NaN	0.84876	1	4803	4803		0.39566	0	1	12052			21187	6573	12226	12580	16783	16783					0.08351007594001203
QKLPGKIH	8	Unmodified	_QKLPGKIH_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5676120985	1	920.567612	919.560336	-0.39743	-0.00036586	-8.9202	-0.0082116	-9.3176	-0.0085775	920.559780576652	55.843	0.047943	55.842	55.842	55.89	-0.00059128	294	52	1.4446791	0.030261159	1.4431597	293.66434	0	6.1512756						78	3	2	NaN	NaN	NaN	0.84692	1	6288	6288		1.4396	0	1	9507.5			21188	3123	12227	12581	16784	16784					0.09733787750928968
QKLPGKIH	8	Unmodified						0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	920.567612	919.560336	1.7382	0.0016002	-10.884	-0.010019	-9.1454	-0.008419	920.5574497116844	55.845	0.072021	55.845	55.821	55.893	0	300	61	1.4411188	0.0356071	1.4411188	292.94064		7.2379456	0.0014026	-0.00089181	-0.0010204	NaN	1.4396	117	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16518			21189	3123	12227	12581							0.09733787750928968
QKNQEKMEEII	11	Oxidation (M)	_QKNQEKM(Oxidation (M))EEII_		QKNQEKM(1)EEII		QKNQEKM(44)EEII	0	0	1			REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3532163013001	2	703.353216	1404.69188	0.38483	0.00027067	-0.18278	-0.00012856	0.20205	0.00014211	703.352617810686	33.647	0.1689	33.645	33.597	33.766	-0.0018463	1041	82	0.9955231	0.049375296	0.99400365	402.6554	0	19.970642						469	8	4	NaN	NaN	NaN	0.073891	1	19153	19153		43.776	10.998	1	76620	+		21190	13600	12228	12582	16785	16785		657			0.005721404752193848
QKNQEKMEEII	11	Oxidation (M)						0	0	1			REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	703.353216	1404.69188	0.56147	0.00039491	-0.98882	-0.00069549	-0.42735	-0.00030058	703.3525938712517	33.648	0.24122	33.648	33.576	33.817	0	1044	91	0.99369496	0.054870307	0.99369496	401.916		22.193207	0.0015365	-0.00051224	-0.00015434	NaN	43.776	486	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80383	+		21191	13600	12228	12582				657			0.005721404752193848
QKNQEKMEEII	11	Oxidation (M)						0	0	1			REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	REV__tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	703.353216	1404.69188	0.38483	0.00027067	-0.18278	-0.00012856	0.20205	0.00014211	703.352617810686	33.647	0.1689	33.645	33.597	33.766	-0.0018463	1041	82	0.9955231	0.049375296	0.99400365	402.6554		19.970642	-0.0015365	0.00062162	0.00015434	NaN	43.776	469	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76620	+		21192	13600	12228	12582				657			0.005721404752193848
QKQGERWT	8	Unmodified	_QKQGERWT_					0	0	0			REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5221184689	1	1032.52212	1031.51484	1.0488	0.0010829	7.8794	0.0081357	8.9282	0.0092186	1032.530173644968	29.955	0.072378	29.949	29.925	29.997	-0.0064106	168	103	1.5192716	0.06028819	1.5177522	308.33206	0	12.235352						162	4	2	NaN	NaN	NaN	0.83211	1	9632	9632		4.9097	0.85605	1	14998	+		21193	9693	12229	12583	16786	16786					0.0003451749792020564
QKWTLQSNQ	9	Unmodified	_QKWTLQSNQ_					0	0	0			REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.5745479698999	1	1132.57455	1131.56727	0.72788	0.00082438	0.02904	3.289E-05	0.75692	0.00085727	1132.574899250138	30.293	0.096483	30.287	30.287	30.383	-0.0064106	63	70	1.5811787	0.040612817	1.5796592	320.52133	0	8.232666						117	5	2	NaN	NaN	NaN	0.38313	1	13702	13702		14.425	0	1	16862	+		21194	11122	12230	12584	16787	16787					0.006750558408384677
QKYKQIKTK	9	Unmodified	_QKYKQIKTK_					0	0	0			REV__nc|ENSG00000003402|O15519-12|CFLAR	REV__nc|ENSG00000003402|O15519-12|CFLAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8585978529501	2	582.858598	1163.70264	2.6682	0.0015552	-1.6972	-0.0009892	0.97104	0.00056598	582.8574364203149	53.803	0.3703	53.803	53.602	53.972	0	1137	148	0.9369253	0.09003341	0.9369253	379.71863	0	36.488922						884	15	5	NaN	NaN	NaN	0.66529	1	15282	15282		2.1763	0.2517	1	1312000	+		21195	8350	12231	12585	16788	16788					0.12733955702469757
QKYKRAALEA	10	Unmodified	_QKYKRAALEA_					0	0	0			REV__ENST00000392357.1_1_17:80013617-80013770:+|nuORF	REV__ENST00000392357.1_1_17:80013617-80013770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.33802958635	2	589.33803	1176.66151	0.99937	0.00058897	6.6073	0.0038939	7.6067	0.0044829	589.3415555393874	31.597	0.14483	31.597	31.477	31.621	0	1098	79	0.960755	0.0476107	0.960755	389.3261	0	19.293243						261	7	4	NaN	NaN	NaN	0.77928	1	15724	15724		0.69115	0.17511	1	55191	+		21196	10561	12232	12586	16789	16789					0.0802419466297124
QLAGAAAF	8	Unmodified	_QLAGAAAF_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.3988154357	1	748.398815	747.391539	1.6313	0.0012209	-10.367	-0.0077588	-8.7358	-0.0065379	748.3910019310766	22.886	0.19284	22.872	22.776	22.969	-0.01354	564	100	1.2837118	0.059352517	1.2821923	261.82892	0	12.105698						228	9	2	NaN	NaN	NaN	0.84207	1	3926	3926		3.5732	0.41988	1	29042	+		21197	10924	12233	12587	16790	16790					0.0077388611742890134
QLARARHL	8	Unmodified	_QLARARHL_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5799081193001	1	964.579908	963.572632	1.6975	0.0016373	2.8747	0.0027729	4.5722	0.0044102	964.5826847209617	56.085	0.048046	56.085	56.061	56.109	0	240	61	1.4766881	0.0355314	1.4766881	299.96854	0	7.2177124						122	3	3	NaN	NaN	NaN	0.84692	1	7453	7453		1.4396	0	1	22097	+		21198	8454	12234	12588	16791	16791					0.08938824213976204
QLARARHL	8	Unmodified						0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	964.579908	963.572632	1.6975	0.0016373	2.8747	0.0027729	4.5722	0.0044102	964.5826847209617	56.085	0.048046	56.085	56.061	56.109	0	240	61	1.4766881	0.0355314	1.4766881	299.96854		7.2177124	0.0013502	-0.0021085	-0.00012852	NaN	1.4396	122	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22097	+		21199	8454	12234	12588							0.08938824213976204
QLCNVARI	8	Unmodified	_QLCNVARI_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.7552868743999	2	458.755287	915.496021	1.0929	0.00050138	-8.3148	-0.0038145	-7.2219	-0.0033131	458.75200315630326	55.893	0.072067	55.893	55.869	55.941	0	1320	58	0.824661	0.035077274	0.824661	335.2792	0	14.26123						144	4	4	NaN	NaN	NaN	0.8439	1	6337	6337		3.1533	0	1	11693			21200	2223	12235	12589	16792	16792					0.03489264602467301
QLDEILSFP	9	Unmodified	_QLDEILSFP_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2793146892001	2	531.279315	1060.54408	1.8907	0.0010045	-0.54475	-0.00028941	1.346	0.00071509	531.280050321823	29.836	0.14481	29.836	29.739	29.884	0	1245	79	0.87076044	0.047889054	0.87076044	353.30502	0	19.430664						244	7	3	NaN	NaN	NaN	0.14787	1	11128	11128		28.896	0	1	39567	+		21201	10997	12236	12590	16793	16793					0.01622617003522464
QLDEILSFP	9	Unmodified						0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.279315	1060.54408	1.8907	0.0010045	-0.54475	-0.00028941	1.346	0.00071509	531.280050321823	29.836	0.14481	29.836	29.739	29.884	0	1245	79	0.87076044	0.047889054	0.87076044	353.30502		19.430664	0.0039745	-0.0011092	-0.00016098	NaN	28.896	244	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39567	+		21202	10997	12236	12590							0.01622617003522464
QLEEEAAKP	9	Unmodified	_QLEEEAAKP_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7587464225999	2	507.758746	1013.50294	1.0925	0.00055473	-0.15096	-7.665E-05	0.94156	0.00047808	507.7581997261053	20.477	0.096195	20.463	20.439	20.535	-0.014141	1329	64	0.81912065	0.038769722	0.8176012	332.5502	0	15.739868						170	5	3	NaN	NaN	NaN	0.2961	1	8943	8943		19.164	2.3053	1	16087			21203	5631;3301	12237	12591	16794	16794					-0.00327144035964011
QLEWTEAI	8	Unmodified	_QLEWTEAI_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.4938380329	1	989.493838	988.486562	2.4223	0.0023969	4.6869	0.0046376	7.1092	0.0070345	989.4975704801625	25.201	0.048286	25.189	25.165	25.214	-0.012011	228	40	1.4837929	0.023084521	1.4822735	301.30466	0	4.6875916						52	3	2	NaN	NaN	NaN	0.82627	1	7995	7995		5.6942	0	1	4323.1			21204	2477	12238	12592	16795	16795					-0.00814225202043417
QLFMNALQ	8	Unmodified	_QLFMNALQ_					0	0	0			REV__ENSG00000198841|ENST00000371614|KTI12	REV__ENSG00000198841|ENST00000371614|KTI12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.74967018025	2	482.74967	963.484787	2.337	0.0011282	-9.474	-0.0045736	-7.137	-0.0034454	482.7447464284546	16.491	0.14377	16.478	16.43	16.574	-0.012995	1311	76	0.83019954	0.046179354	0.8286801	337.28238	0	18.761108						182	7	2	NaN	NaN	NaN	0.78264	1	7275	7275		11.548	0.37812	1	16520	+		21205	11197	12239	12593	16796	16796					0.0015844250834788909
QLFQCDED	8	Unmodified	_QLFQCDED_					0	0	0		CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.20020708844993	2	499.200207	996.385861	1.7403	0.00086876	-1.9602	-0.00097855	-0.21993	-0.00010979	499.1986934122896	23.826	0.096439	23.813	23.789	23.886	-0.013048	1338	34	0.81357855	0.020325482	0.8120591	330.3762	0	8.253754						56	5	2	NaN	NaN	NaN	0.82797	1	8263	8263		5.4659	0	1	5246.3			21206	240	12240	12594	16797	16797					-0.11247625247222004
QLFSELFQA	9	Unmodified	_QLFSELFQA_					0	0	0			REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7794818647001	2	541.779482	1081.54441	1.5759	0.00085379	-0.83974	-0.00045495	0.73616	0.00039884	541.7785004666767	23.899	0.048195	23.886	23.861	23.91	-0.01305	1227	46	0.88180584	0.027602911	0.8802864	357.6975	0	11.196899						110	3	3	NaN	NaN	NaN	0.2345	1	11736	11736		23.118	1.3465	1	16117	+		21207	9502	12241	12595	16798	16798					0.0069003672338112665
QLFSYIGI	8	Unmodified	_QLFSYIGI_					0	0	0			REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.76056083005	2	470.760561	939.506569	0.034463	1.6224E-05	-9.8151	-0.0046206	-9.7806	-0.0046043	470.7559739647309	20.622	0.096411	20.608	20.559	20.656	-0.014088	1344	85	0.8098828	0.051757276	0.8083634	329.14648	0	21.03482						168	5	3	NaN	NaN	NaN	0.84207	1	6674	6674		3.5732	0	1	22764	+		21208	13386	12242	12596	16799	16799					0.03439570528564673
QLFTHDTA	8	Unmodified	_QLFTHDTA_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.4472221912999	1	932.447222	931.439946	2.0821	0.0019414	-10.536	-0.0098246	-8.4542	-0.0078831	932.4377511727447	22.863	0.096464	22.863	22.863	22.959	0	360	49	1.405474	0.028543234	1.405474	285.64124	0	5.800995						116	5	2	NaN	NaN	NaN	0.8439	1	6624	6624		3.1533	0.69183	1	8478.4	+		21209	8738	12243	12597	16800	16800					-0.02851665033347217
QLGALAGL	8	Unmodified	_QLGALAGL_					0	0	0		COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.4457656283001	1	742.445766	741.438489	1.7542	0.0013024	0.30923	0.00022959	2.0634	0.001532	742.4456328721027	22.814	0.096487	22.814	22.79	22.887	0	519	52	1.310647	0.030507088	1.310647	267.36133	0	6.2232056						92	5	2	NaN	NaN	NaN	0.76633	1	3941	3941		13.737	0	1	9415.5			21210	173	12244	12598	16801	16801					0.05742745668578664
QLGEELGTL	9	Unmodified	_QLGEELGTL_					0	0	0		MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|14|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.5044027192001	1	959.504403	958.497126	1.5715	0.0015079	2.214	0.0021243	3.7855	0.0036322	959.5086546189633	27.977	0.1689	27.977	27.929	28.098	0	252	106	1.4695803	0.062256098	1.4695803	298.54697	0	12.6474						260	8	2	NaN	NaN	NaN	0.070055	1	7295	7295		40.154	0	1	31601			21211	7881	12245	12599	16802	16802					0.01621757452392103
QLGLPWAP	8	Unmodified	_QLGLPWAP_					0	0	0		ENST00000524846.5_1_8:144643051-144643375:+|nuORF;ENST00000531184.5_1_8:144641759-144643375:+|nuORF	ENST00000524846.5_1_8:144643051-144643375:+|nuORF	ENST00000524846.5_1_8:144643051-144643375:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.4879647939999	1	881.487965	880.480688	1.8301	0.0016132	-3.7604	-0.0033147	-1.9303	-0.0017015	881.4843574962737	56.037	0.04805	56.037	56.037	56.085	0	390	46	1.3876231	0.02679205	1.3876231	282.25095	0	5.4496765						81	3	3	NaN	NaN	NaN	0.84651	1	5810	5810		1.6704	0	1	6675.9			21212	7419	12246	12600	16803	16803					0.03566721076936119
QLGPKSAT	8	Unmodified	_QLGPKSAT_					0	0	0			REV__nc|ENSG00000078246|O75386-3|TULP3	REV__nc|ENSG00000078246|O75386-3|TULP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	801.4464939098001	1	801.446494	800.439217	2.0164	0.001616	7.8116	0.0062606	9.828	0.0078766	801.4521829751058	55.893	0.072067	55.893	55.869	55.941	0	363	169	1.4036897	0.09997594	1.4036897	285.95773	0	20.366974						328	4	3	NaN	NaN	NaN	0.83211	1	4756	4756		4.9097	0.49665	1	28055	+		21213	8633	12247	12601	16804	16804					0.03101540317618401
QLGPKSAT	8	Unmodified						0	0	0			REV__nc|ENSG00000078246|O75386-3|TULP3	REV__nc|ENSG00000078246|O75386-3|TULP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	801.446494	800.439217	2.0164	0.001616	7.8116	0.0062606	9.828	0.0078766	801.4521829751058	55.893	0.072067	55.893	55.869	55.941	0	363	169	1.4036897	0.09997594	1.4036897	285.95773		20.366974	0.001427	-0.00062072	0.00075972	NaN	4.9097	328	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28055	+		21214	8633	12247	12601							0.03101540317618401
QLGPKSAT	8	Unmodified						0	0	0			REV__nc|ENSG00000078246|O75386-3|TULP3	REV__nc|ENSG00000078246|O75386-3|TULP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	801.446494	800.439217	-0.19889	-0.0001594	9.3702	0.0075097	9.1713	0.0073503	801.4528397306427	55.891	0.072014	55.89	55.866	55.938	-0.00059128	363	142	1.4036897	0.08388603	1.4021703	285.95773		17.089172	-0.001427	0.00062843	-0.00075972	NaN	4.9097	223	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18112	+		21215	8633	12247	12601							0.03101540317618401
QLGRGEPML	9	Unmodified	_QLGRGEPML_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5244266548001	1	1000.52443	999.51715	1.7633	0.0017643	-1.4342	-0.0014349	0.32916	0.00032934	1000.5241822104018	26.987	0.048285	26.977	26.977	27.025	-0.010126	249	64	1.4713576	0.037310004	1.4698381	298.73416	0	7.575165						71	3	2	NaN	NaN	NaN	0.64666	1	8391	8391		3.5698	0.35817	1	4744.5			21216	634	12248	12602	16805	16805					0.017372299113503686
QLGRGEPML	9	Unmodified						0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.52443	999.51715	2.0539	0.0020549	-2.5356	-0.002537	-0.48177	-0.00048202	1001.5197110895002	26.698	0.024139	26.698	26.698	26.722	0	252	37	1.4695803	0.021327853	1.4695803	298.37332		4.3302917	-0.13958	-0.00038939	-0.0001289	NaN	3.5698	39	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2248.5			21217	634	12248	12602							0.017372299113503686
QLGSPLTSLN	10	Unmodified	_QLGSPLTSLN_					0	0	0			REV__ENSG00000126861|ENST00000247271|OMG	REV__ENSG00000126861|ENST00000247271|OMG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5575009222	1	1029.5575	1028.55022	1.5272	0.0015724	1.8303	0.0018844	3.3575	0.0034568	1030.5606380036713	29.907	0.048265	29.9	29.876	29.924	-0.0070667	168	58	1.5192716	0.033670902	1.5177522	308.3438	0	6.833679						59	3	2	NaN	NaN	NaN	0.69717	1	9526	9526		8.2448	0.65722	1	4501	+		21218	9426	12249	12603	16806	16806					0.03709135235044414
QLHCRRKRR	9	Unmodified	_QLHCRRKRR_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1252.7279861149998	1	1252.72799	1251.72071	1.8356	0.0022995	-2.1651	-0.0027123	-0.32956	-0.00041285	1252.7265103580326	37.479	0.02412	37.482	37.482	37.506	0.0028229	1053	67	0.9882094	0.040251255	0.98669	200.0883	0	8.149902						78	2	2	NaN	NaN	NaN	0.68801	1	17060	17060		0.23014	0	1	4515			21219	2840	12250	12604	16807	16807					0.10491812196164574
QLHDEVHQWRR	11	Unmodified	_QLHDEVHQWRR_					0	0	0		ENST00000459871.1_1_20:17445809-17462712:+|nuORF;nc|ENSG00000125851|P16519-2|PCSK2;nc|ENSG00000125851|P16519-3|PCSK2;ENSG00000125851|ENST00000262545|PCSK2	ENST00000459871.1_1_20:17445809-17462712:+|nuORF	ENST00000459871.1_1_20:17445809-17462712:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.9236406227333	3	501.923641	1502.74909	1.7615	0.00088414	-10.353	-0.0051962	-8.5911	-0.0043121	501.91779246630875	22.597	0.072405	22.597	22.573	22.645	0	1425	67	0.7599118	0.0407812	0.7599118	460.7417	0	24.726044						93	4	2	NaN	NaN	NaN	0.77858	1	20593	20593		0.49077	0.11043	1	7596.7			21220	2478	12251	12605	16808	16808					0.017827885864335258
QLIVKIGK	8	Unmodified	_QLIVKIGK_					0	0	0			REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.6084142807002	1	898.608414	897.601138	1.89	0.0016984	1.3115	0.0011785	3.2015	0.0028769	898.609266333924	59.061	0.14414	59.061	58.988	59.133	0	270	70	1.458913	0.040906787	1.458913	296.6646	0	8.318237						327	7	4	NaN	NaN	NaN	0.84727	1	6033	6033		1.2418	0	1	50294	+		21221	13367	12252	12606	16809	16809					0.1482412907057551
QLIVKIGK	8	Unmodified						0	0	0			REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	898.608414	897.601138	1.89	0.0016984	1.3115	0.0011785	3.2015	0.0028769	898.609266333924	59.061	0.14414	59.061	58.988	59.133	0	270	70	1.458913	0.040906787	1.458913	296.6646		8.318237	0.061364	-8.341E-06	0.00075972	NaN	1.2418	327	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50294	+		21222	13367	12252	12606							0.1482412907057551
QLIVKIGK	8	Unmodified						0	0	0			REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	REV__TBC1D9B|p.E694K|1|0.17|ENSG00000197226|chr5:179875008-179875008|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	898.608414	897.601138	0.33048	0.00029697	1.4175	0.0012738	1.748	0.0015708	898.6096582158061	58.938	0.07193	58.938	58.866	58.938	-0.00045395	270	34	1.458913	0.01955998	1.4573935	296.6646		3.9774475	-0.061364	8.6945E-05	-0.00075972	NaN	1.2418	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3641.7	+		21223	13367	12252	12606							0.1482412907057551
QLKHKEFLL	9	Unmodified	_QLKHKEFLL_					0	0	0		nc|ENSG00000054282|Q86SQ7-2|SDCCAG8;nc|ENSG00000054282|Q86SQ7-3|SDCCAG8;nc|ENSG00000054282|Q86SQ7-4|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3478659911501	2	578.347866	1154.68118	1.003	0.0005801	-7.9924	-0.0046224	-6.9894	-0.0040423	578.3431079573052	32.441	0.21717	32.438	32.365	32.583	-0.0031052	1170	61	0.91673553	0.036734402	0.9152161	371.57013	0	14.88916						407	10	4	NaN	NaN	NaN	0.44082	1	14488	14488		12.049	0	1	82829			21224	589	12253	12607	16810	16810					0.11002570673758783
QLKQYFCY	8	Unmodified	_QLKQYFCY_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7627775555001	2	546.762778	1091.511	0.96106	0.00052547	0.97678	0.00053407	1.9378	0.0010595	546.7640534110047	33.744	0.048264	33.742	33.718	33.766	-0.0018463	1230	55	0.8799654	0.03312534	0.878446	356.90997	0	13.435486						73	3	2	NaN	NaN	NaN	0.82332	1	12142	12142		6.0903	0.39618	1	6462.3	+		21225	8544	12254	12608	16811	16811					-0.03109288320183623
QLLQHFYD	8	Unmodified	_QLLQHFYD_					0	0	0			REV__ENSG00000165490|ENST00000533655|DDIAS	REV__ENSG00000165490|ENST00000533655|DDIAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	355.1784248062	3	355.178425	1062.51345	2.3777	0.0008445	-2.8048	-0.0009962	-0.42712	-0.0001517	355.1779244772391	18.676	0.07197	18.676	18.676	18.748	0	1542	34	0.6874725	0.020473778	0.6874725	418.3908	0	12.460205						42	4	2	NaN	NaN	NaN	0.84455	1	11219	11219		1.7022	0	1	3300.8	+		21226	10383	12255	12609	16812	16812					-0.015311165908542534
QLMKGCHLPM	10	Unmodified	_QLMKGCHLPM_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2850396188	2	579.28504	1156.55553	1.259	0.0007293	4.5421	0.0026312	5.8011	0.0033605	579.287677956276	30.534	0.072372	30.529	30.505	30.577	-0.0057545	1176	64	0.9130621	0.038594007	0.91154265	370.07407	0	15.642578						78	4	2	NaN	NaN	NaN	0.61246	1	14537	14537		14.042	0.57854	1	7144			21227	2627	12256	12610	16813	16813					-0.01648923769994326
QLPDKWQHDLF	11	Unmodified	_QLPDKWQHDLF_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000511412.1_1_17:79847713-79848864:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.24197624516665	3	476.241976	1425.7041	1.8521	0.00088206	-1.9427	-0.00092519	-0.090565	-4.3131E-05	476.24080332779613	23.128	0.096458	23.128	23.103	23.2	0	1374	73	0.791392	0.0443874	0.791392	480.06473	0	26.92575						117	5	4	NaN	NaN	NaN	0.73717	1	20257	20257		5.5374	0.63669	1	12533			21228	5318	12257	12611	16814	16814					0.008275450005612583
QLPHSKLH	8	Unmodified	_QLPHSKLH_					0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.27470104804996	2	480.274701	958.534849	2.3706	0.0011385	7.4885	0.0035965	9.8591	0.0047351	480.2781710605318	18.628	0.071957	18.628	18.58	18.652	0	1338	31	0.81357855	0.018476725	0.81357855	330.55374	0	7.507019						50	4	2	NaN	NaN	NaN	0.83582	1	7301	7301		4.4131	1.2597	1	4097.2	+		21229	9273	12258	12612	16815	16815					0.053923132285035535
QLPHSKLH	8	Unmodified						0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	480.274701	958.534849	2.3706	0.0011385	7.4885	0.0035965	9.8591	0.0047351	480.2781710605318	18.628	0.071957	18.628	18.58	18.652	0	1338	31	0.81357855	0.018476725	0.81357855	330.55374		7.507019	0.0083816	-0.00055312	0.00075972	NaN	4.4131	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4097.2	+		21230	9273	12258	12612							0.053923132285035535
QLPHSKLH	8	Unmodified						0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	480.274701	958.534849	2.7052	0.0012992	9.2294	0.0044327	11.935	0.0057319	480.28024566557406	18.626	0.095982	18.612	18.588	18.684	-0.014059	1338	31	0.81357855	0.018478692	0.8120591	330.55374		7.507843	-0.0083816	0.0011191	-0.00075972	NaN	4.4131	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3801.1	+		21231	9273	12258	12612							0.053923132285035535
QLPQPDVFPLF	11	Unmodified	_QLPQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.85043846985	2	650.850438	1299.68632	1.2413	0.0008079	-2.9561	-0.001924	-1.7148	-0.0011161	650.8484053463388	36.133	0.12064	36.133	36.085	36.205	0	1113	70	0.9515937	0.04216945	0.9515937	385.19046	0	17.069519						195	6	3	NaN	NaN	NaN	0.21983	1	18774	18774		28.495	6.6603	1	15908			21232	6189	12259	12613	16816	16816					0.048468297457020526
QLPRSRRRRN	10	Unmodified	_QLPRSRRRRN_					0	0	0		ENST00000398675.7_1_12:42491292-42491391:-|nuORF	ENST00000398675.7_1_12:42491292-42491391:-|nuORF	ENST00000398675.7_1_12:42491292-42491391:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.93610347583336	3	446.936103	1337.78648	1.7523	0.00078319	-3.2164	-0.0014375	-1.4641	-0.00065436	446.9356332094573	21.103	0.072184	21.089	21.065	21.138	-0.014004	1398	28	0.77658504	0.016666055	0.7750656	471.37958	0	10.116119						42	4	2	NaN	NaN	NaN	0.77953	1	18517	18517		0.63172	0.19954	1	2770.5			21233	6815	12260	12614	16817	16817					0.1310992464273113
QLPVVVFTF	9	Unmodified	_QLPVVVFTF_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.6029945517998	1	1049.60299	1048.59572	1.4861	0.0015598	-2.7212	-0.0028562	-1.2351	-0.0012963	1049.6020993808338	35.987	0.072445	35.988	35.964	36.036	0.0011024	129	58	1.5422925	0.033627987	1.540773	312.93683	0	6.823242						90	4	2	NaN	NaN	NaN	0.011942	1	10361	10361		87.021	57.422	1	9348.5			21234	5879	12261	12615	16818	16818					0.07336405488081255
QLRKGPPP	8	Unmodified	_QLRKGPPP_					0	0	0		ENSG00000141505|ENST00000269299|ASGR1	ENSG00000141505|ENST00000269299|ASGR1	ENSG00000141505|ENST00000269299|ASGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.5363119701001	1	892.536312	891.529036	1.8385	0.001641	4.7254	0.0042176	6.5639	0.0058585	892.5401125879794	58.365	0.11998	58.365	58.269	58.389	0	333	49	1.4215236	0.028518915	1.4215236	289.09134	0	5.799835						115	6	2	NaN	NaN	NaN	0.84876	1	5950	5950		0.39566	0.065779	1	12415			21235	3328	12262	12616	16819	16819					0.07893214716841612
QLSGGGGG	8	Unmodified	_QLSGGGGG_					0	0	0		nc|ENSG00000138795|Q9UJU2-2|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENSG00000138795|ENST00000265165|LEF1	nc|ENSG00000138795|Q9UJU2-2|LEF1	nc|ENSG00000138795|Q9UJU2-2|LEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.65355306960004	2	316.653553	631.292553	1.6952	0.0005368	3.6562	0.0011578	5.3514	0.0016946	316.6554134771465	40.078	0.43351	40.084	39.771	40.204	0.0060463	1533	139	0.6930556	0.08554798	0.6915362	283.63986	0	35.011353						1151	19	3	NaN	NaN	NaN	0.84756	1	1427	1427		1.072	0	1	160150			21236	3191	12263	12617	16820	16820					-0.03784136847468744
QLTDKNEL	8	Unmodified	_QLTDKNEL_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF;ENSG00000180071|ENST00000399703|ANKRD18A;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENSG00000230453|ENST00000684830|ANKRD18B	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.75346407945	2	480.753464	959.492375	1.5747	0.00075703	3.9299	0.0018893	5.5045	0.0026463	480.755333536297	20.983	0.09623	20.983	20.983	21.079	0	1353	28	0.8043377	0.016640782	0.8043377	326.79465	0	6.7609863						48	5	2	NaN	NaN	NaN	0.55996	1	7324	7324		27.789	3.2268	1	3179.5			21237	5182	12264	12618	16821	16821					0.011008733096218748
QLVGAAAG	8	Unmodified	_QLVGAAAG_					0	0	0			REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3831653715	1	686.383165	685.375889	2.0044	0.0013758	-2.2387	-0.0015366	-0.23425	-0.00016078	686.3817959906554	57.525	0.071934	57.525	57.501	57.573	0	522	79	1.3088527	0.046675324	1.3088527	267.39148	0	9.535522						116	4	2	NaN	NaN	NaN	0.84692	1	2949	2949		1.4396	0.19772	1	11899	+		21238	9365	12265	12619	16822	16822					0.020615996003698456
QLVGAAAG	8	Unmodified						0	0	0			REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	686.383165	685.375889	2.0044	0.0013758	-2.2387	-0.0015366	-0.23425	-0.00016078	686.3817959906554	57.525	0.071934	57.525	57.501	57.573	0	522	79	1.3088527	0.046675324	1.3088527	267.39148		9.535522	0.0014607	-0.0013347	-0.00013745	NaN	1.4396	116	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11899	+		21239	9365	12265	12619							0.020615996003698456
QLVGAAAG	8	Unmodified						0	0	0			REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	REV__ENST00000573702.1_1_16:67984989-67985786:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	686.383165	685.375889	-0.3286	-0.00022554	2.7382	0.0018795	2.4096	0.0016539	686.3829488825279	57.523	0.096008	57.522	57.498	57.594	-0.00053787	519	139	1.310647	0.08265877	1.3091276	267.75803		16.88675	-0.0014607	0.0020814	0.00013745	NaN	1.4396	229	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21346	+		21240	9365	12265	12619							0.020615996003698456
QLVQLSLL	8	Unmodified	_QLVQLSLL_					0	0	0			REV__ENST00000551779.5_1_12:54744238-54744304:+|nuORF	REV__ENST00000551779.5_1_12:54744238-54744304:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.5716944234001	1	913.571694	912.564418	0.92561	0.00084561	0.10298	9.4081E-05	1.0286	0.0009397	913.5721147034963	31.308	0.072392	31.308	31.284	31.356	0	276	46	1.4553556	0.026684046	1.4553556	295.86798	0	5.4247437						82	4	2	NaN	NaN	NaN	0.72013	1	6287	6287		17.799	1.2148	1	7073.1	+		21241	12744	12266	12620	16823	16823					0.10463832454001931
QLWSGLQLL	9	Unmodified	_QLWSGLQLL_					0	0	0			REV__ENST00000578730.1_1_4:1244893-1245058:+|nuORF	REV__ENST00000578730.1_1_4:1244893-1245058:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.6040571843	1	1057.60406	1056.59678	1.0578	0.0011187	-8.9065	-0.0094195	-7.8487	-0.0083008	1057.5945791852282	31.5	0.096533	31.495	31.471	31.568	-0.0044174	114	52	1.5511382	0.030069113	1.5496187	314.70074	0	6.100525						85	5	2	NaN	NaN	NaN	0.2345	1	10730	10730		23.118	1.2826	1	9946.8	+		21242	12858	12267	12621	16824	16824					0.0707461985698501
QLYEQYEV	8	Unmodified	_QLYEQYEV_					0	0	0			REV__STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	REV__STAMBPL1|p.K405Rfs*21|1|0.52|ENSG00000138134|chr10:88922389-88922389|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2532969039501	2	536.253297	1070.49204	0.83019	0.00044519	-7.6019	-0.0040766	-6.7717	-0.0036314	536.2495354899005	28.145	0.16897	28.137	28.064	28.233	-0.0089798	1266	76	0.85786515	0.046069622	0.8563457	348.0314	0	18.690186						282	8	4	NaN	NaN	NaN	0.78264	1	11276	11276		11.548	0	1	40063	+		21243	9716	12268	12622	16825	16825					-0.04038546410242816
QLYSAAALVA	10	Unmodified	_QLYSAAALVA_					0	0	0			REV__ENSG00000177374|ENST00000619757|HIC1	REV__ENSG00000177374|ENST00000619757|HIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.78202455364993	2	503.782025	1005.5495	1.1702	0.00058952	-0.63193	-0.00031836	0.53825	0.00027116	503.7820300350578	24.791	0.14472	24.779	24.731	24.875	-0.012394	1326	67	0.8209676	0.040618062	0.81944823	333.33536	0	16.492035						131	7	2	NaN	NaN	NaN	0.64158	1	8645	8645		12.049	0.50025	1	12911	+		21244	10765	12269	12623	16826	16826					0.04694340585979262
QMAELQLE	8	Unmodified	_QMAELQLE_					0	0	0		ENST00000557963.1_1_15:101420597-101420747:+|nuORF	ENST00000557963.1_1_15:101420597-101420747:+|nuORF	ENST00000557963.1_1_15:101420597-101420747:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.4659087229002	1	961.465909	960.458632	1.4154	0.0013609	-0.91544	-0.00088017	0.49999	0.00048072	961.4647541298011	30.92	0.16897	30.915	30.867	31.036	-0.0050716	303	121	1.4393384	0.07126713	1.437819	292.39484	0	14.4776						352	8	3	NaN	NaN	NaN	0.6117	1	7194	7194		24.562	7.9779	1	101440			21245	7581	12270	12624	16827	16827					-0.023178714537721135
QMAFWLCQK	9	Unmodified	_QMAFWLCQK_					0	0	0			REV__ENSG00000125815|ENST00000246012|CST8	REV__ENSG00000125815|ENST00000246012|CST8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.77790469095	2	577.777905	1153.54126	0.9774	0.00056472	3.7389	0.0021603	4.7163	0.002725	577.780416395186	20.742	0.09642	20.728	20.68	20.776	-0.014088	1212	76	0.8910048	0.04597509	0.88948536	361.14514	0	18.634766						158	5	3	NaN	NaN	NaN	0.39244	1	14423	14423		14.042	3.6814	1	24771	+		21246	9402	12271	12625	16828	16828					-0.02937252926653855
QMCFDEDI	8	Unmodified	_QMCFDEDI_					0	0	0		nc|ENSG00000140623|Q8IYM1-2|SEPTIN12;ENSG00000140623|ENST00000268231|SEPTIN12	nc|ENSG00000140623|Q8IYM1-2|SEPTIN12	nc|ENSG00000140623|Q8IYM1-2|SEPTIN12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.69116063584994	2	500.691161	999.367768	1.1307	0.00056615	-3.1645	-0.0015844	-2.0337	-0.0010183	501.1892434769015	31.911	0.07242	31.911	31.887	31.959	0	1353	40	0.8043377	0.02403146	0.8043377	326.6104	0	9.75827						104	4	4	NaN	NaN	NaN	0.79607	1	8546	8546		9.746	1.4557	1	7138.3			21247	3283	12272	12626	16829	16829					-0.13194083493579
QMEKGVEYSL	10	Unmodified	_QMEKGVEYSL_					0	0	0			REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.2868137578001	2	592.286814	1182.55907	1.4949	0.00088541	2.8391	0.0016816	4.334	0.002567	592.2879506207086	19.372	0.096004	19.372	19.348	19.444	0	1206	58	0.894683	0.034937263	0.894683	362.53085	0	14.156799						81	5	2	NaN	NaN	NaN	0.74854	1	15919	15919		4.7291	0.76056	1	6521.8	+		21248	12803	12273	12627	16830	16830					-0.024902591907675742
QMEKGVEYSL	10	Unmodified						0	0	0			REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.286814	1182.55907	1.4949	0.00088541	2.8391	0.0016816	4.334	0.002567	592.2879506207086	19.372	0.096004	19.372	19.348	19.444	0	1206	58	0.894683	0.034937263	0.894683	362.53085		14.156799	0.10413	-0.001488	0.0025988	NaN	4.7291	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6521.8	+		21249	12803	12273	12627							-0.024902591907675742
QMEKGVEYSL	10	Unmodified						0	0	0			REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	REV__ENST00000565906.2_1_15:89532752-89533049:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.286814	1182.55907	1.1519	0.00068227	4.731	0.0028021	5.883	0.0034844	592.7920866262482	19.178	0.14422	19.164	19.116	19.26	-0.014141	1212	79	0.8910048	0.047801137	0.88948536	361.0404		19.369324	-0.10413	0.00075308	-0.0025988	NaN	4.7291	238	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18648	+		21250	12803	12273	12627							-0.024902591907675742
QMGPGPVG	8	Unmodified	_QMGPGPVG_					0	0	0		ENST00000357385.7_1_17:79857297-79857938:+|nuORF	ENST00000357385.7_1_17:79857297-79857938:+|nuORF	ENST00000357385.7_1_17:79857297-79857938:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3552360615001	1	742.355236	741.34796	1.0711	0.00079516	6.0028	0.0044562	7.0739	0.0052513	742.3589296349168	32.128	0.096531	32.128	32.104	32.201	0	549	52	1.292695	0.030539632	1.292695	263.6998	0	6.2298584						126	5	3	NaN	NaN	NaN	0.84207	1	3935	3935		3.5732	0	1	12375			21251	6574	12274	12628	16831	16831					-0.03306046651357519
QMGPGPVG	8	Unmodified	_QMGPGPVG_					0	0	0		ENST00000357385.7_1_17:79857297-79857938:+|nuORF	ENST00000357385.7_1_17:79857297-79857938:+|nuORF	ENST00000357385.7_1_17:79857297-79857938:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3552360615001	1	742.355236	741.34796	1.006	0.00074684	5.6352	0.0041833	6.6412	0.0049301	742.3592780909022	32.127	0.12059	32.123	32.099	32.22	-0.0037575	549	70	1.292695	0.041327238	1.2911756	263.6998	0	8.43042						133	6	2	NaN	NaN	NaN	0.81807	1	3856	3856		6.794	0	1	12530			21252	6574	12274	12628	16832	16832					-0.03306046651357519
QMHFHDPT	8	Unmodified	_QMHFHDPT_					0	0	0			REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	REV__ENST00000438961.1_1_7:766900-790557:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.71890136810003	2	506.718901	1011.42325	1.0264	0.00052008	2.924	0.0014817	3.9504	0.0020017	507.2209443817778	26.866	0.19306	26.856	26.759	26.952	-0.010645	1326	55	0.8209676	0.033236563	0.81944823	333.3092	0	13.493866						199	9	4	NaN	NaN	NaN	0.83211	1	8844	8844		4.9097	0.85605	1	10642	+		21253	12189	12275	12629	16833	16833					-0.08200489190926419
QMIDESCFIPE	11	Unmodified	_QMIDESCFIPE_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.85803468160003	3	437.858035	1310.55227	1.3003	0.00056936	4.3451	0.0019025	5.6454	0.0024719	437.8604636177336	14.117	0.095962	14.106	14.034	14.13	-0.010672	1482	40	0.72465914	0.024146438	0.7231397	439.95435	0	14.659729						78	5	2	NaN	NaN	NaN	0.74794	1	18111	18111		1.6806	0	1	6694.7	+		21254	13175	12276	12630	16834	16834					-0.09057940133652664
QMIESHSFLL	10	Oxidation (M)	_QM(Oxidation (M))IESHSFLL_		QM(1)IESHSFLL		QM(40)IESHSFLL	0	0	1		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|93|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|93|3|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|93|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.8026309975	2	610.802631	1219.59071	1.5876	0.00096974	-8.376	-0.0051161	-6.7884	-0.0041463	610.797254839117	18.554	0.23995	18.54	18.444	18.684	-0.01395	1170	82	0.91673553	0.04959947	0.9152161	371.3366	0	20.090973						479	11	4	NaN	NaN	NaN	0.14619	1	16285	16285		40.154	8.4784	1	112130			21255	7843	12277	12631	16835	16835		639			-0.010302664368509795
QMSARRLTEQP	11	Unmodified	_QMSARRLTEQP_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.5628324572333	3	439.562832	1315.66667	1.3221	0.00058115	7.5629	0.0033244	8.885	0.0039055	439.5664559442817	16.925	0.14385	16.925	16.854	16.997	0	1455	37	0.7413668	0.022263587	0.7413668	450.07965	0	13.516083						120	7	3	NaN	NaN	NaN	0.76654	1	19045	19045		0.88464	0	1	9314.7	+		21256	9683	12278	12632	16836	16836					0.021461304632794054
QMSHQALIKEL	11	Unmodified	_QMSHQALIKEL_					0	0	0			REV__ENST00000320027.9_1_13:31724110-31724155:-|nuORF	REV__ENST00000320027.9_1_13:31724110-31724155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3502796818501	2	649.35028	1296.68601	0.97466	0.0006329	3.0782	0.0019989	4.0529	0.0026318	649.3531307645621	41.28	0.4332	41.288	41.192	41.625	0.0082588	1203	64	0.8965218	0.038606524	0.89500237	362.907	0	15.627716						811	19	6	NaN	NaN	NaN	0.75376	1	17886	17886		3.9281	1.3287	1	128650	+		21257	11715	12279	12633	16837	16837					0.04953086754221658
QNAFLKAKTS	10	Unmodified	_QNAFLKAKTS_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.3114804848501	2	554.31148	1106.60841	1.5798	0.00087572	-10.115	-0.005607	-8.5355	-0.0047313	554.3058573251583	35.938	0.096405	35.94	35.891	35.988	0.0011024	1233	49	0.87812483	0.029444695	0.8766054	356.1029	0	11.940582						72	5	2	NaN	NaN	NaN	0.75966	1	12767	12767		3.9685	0.39873	1	4185.7			21258	4246	12280	12634	16838	16838					0.05936816880330298
QNAFLKAKTS	10	Unmodified						0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.31148	1106.60841	1.0936	0.0006062	-6.851	-0.0037976	-5.7573	-0.0031914	554.3077755536546	36.036	0.07238	36.036	36.036	36.109	0	1236	31	0.876284	0.018406928	0.876284	355.3564		7.464508	0.048456	0.0021915	-0.00016068	NaN	3.9685	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3669.8			21259	4246	12280	12634							0.05936816880330298
QNEPVEFTSKQ	11	Unmodified	_QNEPVEFTSKQ_					0	0	0			REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	REV__BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.817323934	2	653.817324	1305.62009	1.5484	0.0010124	6.1408	0.004015	7.6892	0.0050273	653.8191831631556	25.588	0.14476	25.576	25.479	25.624	-0.0116	1116	64	0.94976085	0.038485885	0.9482414	384.4301	0	15.577728						84	7	2	NaN	NaN	NaN	0.76276	1	18032	18032		3.261	0.049387	1	7487.1	+		21260	8165	12281	12635	16839	16839					-0.020490308870193985
QNFHYIFLMH	10	Unmodified	_QNFHYIFLMH_					0	0	0		ENST00000426194.1_1_18:30353372-30353567:+|nuORF	ENST00000426194.1_1_18:30353372-30353567:+|nuORF	ENST00000426194.1_1_18:30353372-30353567:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.5534972357333	3	450.553497	1348.63866	1.0087	0.00045445	-10.018	-0.0045138	-9.0098	-0.0040594	450.54840797791076	15.198	0.14414	15.198	15.174	15.318	0	1407	55	0.77102906	0.03334111	0.77102906	467.96875	0	20.236084						113	7	2	NaN	NaN	NaN	0.77835	1	19524	19524		0.9188	0.21059	1	11369			21261	6945	12282	12636	16840	16840					-0.02171147726153322
QNGGAAAA	8	Unmodified	_QNGGAAAA_					0	0	0			REV__SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	REV__SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3107287098999	1	659.310729	658.303452	2.405	0.0015856	-4.2978	-0.0028336	-1.8928	-0.0012479	659.3090678559937	18.77	0.072029	18.756	18.731	18.804	-0.014059	1143	43	0.9332562	0.025691867	0.93173677	190.81259	0	5.252945						57	4	2	NaN	NaN	NaN	0.84945	1	2155	2155		0	0	1	3470.7	+		21262	10844	12283	12637	16841	16841					-0.03936734473211345
QNLESEIEKL	10	Unmodified	_QNLESEIEKL_					0	0	0		BACH1-DSCR3|1|fusion;ENSG00000156273|ENST00000286800|BACH1	BACH1-DSCR3|1|fusion	BACH1-DSCR3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.5469539007	3	401.546954	1201.61903	1.769	0.00071033	3.913	0.0015713	5.682	0.0022816	401.5492671705694	13.613	0.096011	13.613	13.589	13.685	0	1488	40	0.7209441	0.02414906	0.7209441	438.1119	0	14.675171						77	5	2	NaN	NaN	NaN	0.77594	1	16526	16526		0.55697	0.17662	1	6032.3			21263	58	12284	12638	16842	16842					0.02628754744091566
QNLSGCCG	8	Unmodified	_QNLSGCCG_					0	0	0		ENST00000513238.5_1_4:75972029-75972152:+|nuORF	ENST00000513238.5_1_4:75972029-75972152:+|nuORF	ENST00000513238.5_1_4:75972029-75972152:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.2967349046	1	781.296735	780.289458	1.0885	0.00085041	7.0726	0.0055258	8.1611	0.0063762	781.3029432169019	37.506	0.14453	37.506	37.458	37.602	0	681	52	1.2134778	0.030680418	1.2134778	247.31569	0	6.252884						165	7	2	NaN	NaN	NaN	0.84512	1	4488	4488		2.4615	0	1	23018			21264	7365	12285	12639	16843	16843					-0.10947471288147881
QNPALPCV	8	Unmodified	_QNPALPCV_					0	0	0		ENST00000491700.1_1_1:114522138-114523244:+|nuORF;nc|ENSG00000116774|Q9NRN5-3|OLFML3;nc|ENSG00000116774|Q9NRN5-2|OLFML3;ENSG00000116774|ENST00000320334|OLFML3	ENST00000491700.1_1_1:114522138-114523244:+|nuORF	ENST00000491700.1_1_1:114522138-114523244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4236499776999	1	841.42365	840.416374	1.9179	0.0016138	-2.3071	-0.0019412	-0.3892	-0.00032748	841.4216692371529	22.573	0.24124	22.573	22.549	22.79	0	1218	136	0.8873258	0.082835734	0.8873258	180.61974	0	16.861633						407	11	2	NaN	NaN	NaN	0.84727	1	5273	5273		1.2418	0	1	54836			21265	2110	12286	12640	16844	16844					-0.010218020715228704
QNRHFWIFPSF	11	Unmodified	_QNRHFWIFPSF_					0	0	0		ENST00000421004.3_1_5:77655523-77656042:-|nuORF	ENST00000421004.3_1_5:77655523-77656042:-|nuORF	ENST00000421004.3_1_5:77655523-77656042:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.58244429319996	3	493.582444	1477.7255	1.8531	0.00091465	0.2427	0.00011979	2.0958	0.0010344	493.58213403827716	23.73	0.072309	23.73	23.706	23.778	0	1359	25	0.8006399	0.0147894025	0.8006399	485.51047	0	8.968323						54	4	2	NaN	NaN	NaN	0.77509	1	20510	20510		1.1021	0.54511	1	4176.4			21266	6910	12287	12641	16845	16845					0.005749748199150417
QNRHFWIFPSF	11	Unmodified						0	0	0		ENST00000421004.3_1_5:77655523-77656042:-|nuORF	ENST00000421004.3_1_5:77655523-77656042:-|nuORF	ENST00000421004.3_1_5:77655523-77656042:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	493.582444	1477.7255	1.8512	0.00091372	1.3546	0.00066859	3.2058	0.0015823	493.5822802547144	23.754	0.072296	23.741	23.717	23.789	-0.013048	1353	31	0.8043377	0.018488765	0.80281824	487.75278		11.211639	0.0053725	0.00093454	0.0010892	NaN	1.1021	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3588.7			21267	6910	12287	12641							0.005749748199150417
QNTLLHSLLKT	11	Unmodified	_QNTLLHSLLKT_					0	0	0		ENST00000558663.5_1_15:99768880-99791424:-|nuORF	ENST00000558663.5_1_15:99768880-99791424:-|nuORF	ENST00000558663.5_1_15:99768880-99791424:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3720693689501	2	634.372069	1266.72959	1.6016	0.001016	7.8663	0.0049901	9.4679	0.0060062	634.3774809669325	39.093	0.57787	39.093	39.02	39.598	0	1248	124	0.8689189	0.07543987	0.8689189	351.82114	0	30.545258						2289	25	9	NaN	NaN	NaN	0.77633	1	18166	18166		1.1768	0.48567	1	2092000			21268	7584	12288	12642	16846	16846					0.10689019522988019
QPADAERAL	9	Unmodified	_QPADAERAL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L	nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.75125574149996	2	485.751256	969.487959	1.6821	0.00081706	-1.8668	-0.00090678	-0.18471	-8.9725E-05	485.7506256467769	14.573	0.28804	14.573	14.525	14.813	0	1356	79	0.8024889	0.048049927	0.8024889	325.99603	0	19.519379						496	13	3	NaN	NaN	NaN	0.032689	1	7584	7584		55.592	8.1101	1	95931			21269	1298;1062	12289	12643	16847	16847					0.0019940888670362256
QPADAERAL	9	Unmodified	_QPADAERAL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000101104|Q4VXU2-2|PABPC1L	nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.75125574149996	2	485.751256	969.487959	1.512	0.00073446	-1.9336	-0.00093925	-0.42159	-0.00020479	485.75013447116345	14.572	0.35954	14.561	14.441	14.8	-0.011218	1326	79	0.8209676	0.04804474	0.81944823	333.5027	0	19.517273						560	16	4	NaN	NaN	NaN	0.16939	1	7443	7443		27.296	9.4972	1	97011			21270	1298;1062	12289	12643	16848	16848					0.0019940888670362256
QPAGDSAILL	10	Unmodified	_QPAGDSAILL_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5360371986002	1	984.536037	983.528761	2.3632	0.0023267	-0.73237	-0.00072104	1.6308	0.0016056	984.5361648794357	25.829	0.12069	25.817	25.793	25.914	-0.011602	243	67	1.4749115	0.0390929	1.473392	299.52194	0	7.938904						229	6	3	NaN	NaN	NaN	0.026555	1	7836	7836		60.982	11.02	1	30219			21271	1356	12290	12644	16849	16849					0.03633750206347486
QPAGDSAILL	10	Unmodified						0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	984.536037	983.528761	2.4051	0.002368	-1.9939	-0.0019631	0.41126	0.0004049	984.5343882781885	25.829	0.16891	25.829	25.781	25.95	0	249	70	1.4713576	0.040871978	1.4713576	298.80023		8.300201	0.0059245	-0.00069098	-0.0010172	NaN	60.982	259	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29829			21272	1356	12290	12644							0.03633750206347486
QPAPELAVF	9	Unmodified	_QPAPELAVF_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5196588529	1	971.519659	970.512382	1.943	0.0018877	-0.44593	-0.00043323	1.4971	0.0014544	971.5198644466552	28.315	0.14474	28.315	28.267	28.412	0	264	58	1.4624695	0.03378904	1.4624695	297.0503	0	6.8630676						167	7	3	NaN	NaN	NaN	0.055351	1	7623	7623		44.638	21.304	1	13505			21273	542	12291	12645	16850	16850					0.025946690402292916
QPAPELAVF	9	Unmodified	_QPAPELAVF_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.26346765974995	2	486.263468	970.512382	1.6497	0.0008022	-2.094	-0.0010182	-0.44426	-0.00021603	486.26311823016385	28.314	0.072372	28.305	28.281	28.354	-0.0089779	1326	37	0.8209676	0.022162437	0.81944823	333.49774	0	9.00296						57	4	2	NaN	NaN	NaN	0.060816	1	7479	7479		42.318	18.983	1	4925.5			21274	542	12291	12645	16851	16851					0.025946690402292916
QPAPELAVF	9	Unmodified	_QPAPELAVF_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5196588529	1	971.519659	970.512382	1.2928	0.001256	-0.73959	-0.00071853	0.55325	0.00053749	971.5195699052591	28.314	0.072372	28.305	28.281	28.354	-0.0089779	267	52	1.4606913	0.030229092	1.4591719	296.68912	0	6.139984						88	4	2	NaN	NaN	NaN	0.38313	1	7480	7480		14.425	1.8371	1	8359.8			21275	542	12291	12645	16852	16852					0.025946690402292916
QPAQQPKK	8	Unmodified	_QPAQQPKK_					0	0	0		ENST00000553865.1_1_14:99968556-99969378:+|nuORF;nc|ENSG00000090061|O75909-1|CCNK;ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENST00000553865.1_1_14:99968556-99969378:+|nuORF	ENST00000553865.1_1_14:99968556-99969378:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5261412143001	1	924.526141	923.518865	0.87308	0.00080719	-8.0129	-0.0074081	-7.1398	-0.0066009	924.5183229959362	34.492	0.12061	34.491	34.467	34.587	-0.0006485	1269	79	0.8560222	0.047889054	0.85450274	173.99524	0	9.7339325						185	6	3	NaN	NaN	NaN	0.84887	1	6353	6353		0.32989	0	1	17870			21276	1051	12292	12646	16853	16853					0.054046069916125816
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.4883587245	1	919.488359	918.481082	1.9475	0.0017907	-1.5284	-0.0014053	0.41916	0.00038541	919.4875690491775	26.481	0.21722	26.481	26.432	26.65	0	336	91	1.419741	0.053495765	1.419741	288.60007	0	10.874451						369	10	3	NaN	NaN	NaN	0.015029	1	6389	6389		78.289	36.505	1	71857			21277	5664	12293	12647	16854	16854					0.01858096006139931
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4883587245	1	919.488359	918.481082	1.3777	0.0012668	-0.89634	-0.00082417	0.48135	0.00044259	919.4879167412073	26.504	0.21717	26.494	26.421	26.639	-0.010645	336	82	1.419741	0.048143744	1.4182216	288.60007	0	9.7864685						407	10	4	NaN	NaN	NaN	3.9799E-05	1	6254	6254		126.58	65.308	1	74794			21278	5664	12293	12647	16855	16855					0.01858096006139931
QPCVVEEMEIE	11	Unmodified	_QPCVVEEMEIE_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.86155624369997	3	435.861556	1304.56284	1.3724	0.00059818	2.7116	0.0011819	4.084	0.00178	435.86216547245533	19.684	0.12005	19.684	19.612	19.732	0	1422	43	0.7617651	0.025948882	0.7617651	462.5042	0	15.754791						161	6	4	NaN	NaN	NaN	0.69801	1	18845	18845		3.3044	0	1	13956	+		21279	10873	12294	12648	16856	16856					-0.07725957479237877
QPDDHAATTSL	11	Unmodified	_QPDDHAATTSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2674669117	2	578.267467	1154.52038	1.5804	0.0009139	-2.4968	-0.0014438	-0.91642	-0.00052994	578.2658950670443	14.909	0.33631	14.909	14.813	15.15	0	1239	43	0.87444305	0.025775313	0.87444305	354.42874	0	10.447205						200	15	2	NaN	NaN	NaN	0.085722	1	14951	14951		40.957	12.061	1	29977			21280	1267	12295	12649	16857	16857					-0.05069848500943408
QPDDHAATTSL	11	Unmodified	_QPDDHAATTSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2674669117	2	578.267467	1154.52038	1.0601	0.00061302	-1.1065	-0.00063985	-0.046401	-2.6832E-05	578.26715669588	14.908	0.21624	14.896	14.8	15.016	-0.011738	1242	46	0.87260187	0.027617872	0.8710824	353.68246	0	11.194031						229	10	3	NaN	NaN	NaN	0.37105	1	14459	14459		23.086	8.6608	1	26561			21281	1267	12295	12649	16858	16858					-0.05069848500943408
QPDDLINQL	9	Unmodified	_QPDDLINQL_					0	0	0		ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5367654800998	1	1055.53677	1054.52949	2.2467	0.0023715	-0.33613	-0.0003548	1.9106	0.0020167	1055.5367697407128	26.456	0.12066	26.456	26.432	26.553	0	162	58	1.5228153	0.033670902	1.5228153	308.96228	0	6.831421						140	6	3	NaN	NaN	NaN	0.041983	1	10839	10839		50.315	19.705	1	13365			21282	1903	12296	12650	16859	16859					0.004405448553598035
QPDDLINQL	9	Unmodified	_QPDDLINQL_					0	0	0		ENST00000513627.1_1_5:175921035-175923719:+|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5367654800998	1	1055.53677	1054.52949	1.6324	0.001723	-2.1396	-0.0022585	-0.50723	-0.0005354	1055.5338010168139	26.456	0.19301	26.445	26.421	26.614	-0.011137	162	61	1.5228153	0.03544116	1.5212959	308.96228	0	7.190613						131	9	2	NaN	NaN	NaN	0.27608	1	10608	10608		20.449	1.1639	1	13621			21283	1903	12296	12650	16860	16860					0.004405448553598035
QPDDYESYL	9	Unmodified	_QPDDYESYL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1129.4684111433999	1	1129.46841	1128.46113	1.8679	0.0021098	-0.79965	-0.00090318	1.0683	0.0012066	1129.4680396347226	24.309	0.24127	24.309	24.261	24.502	0	126	61	1.544062	0.03538847	1.544062	313.00778	0	7.1738586						308	11	3	NaN	NaN	NaN	0.012495	1	14014	14014		85.344	45.886	1	33842			21284	2919	12297	12651	16861	16861					-0.09795744515145088
QPDDYESYL	9	Unmodified	_QPDDYESYL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1129.4684111433999	1	1129.46841	1128.46113	1.1194	0.0012643	1.0243	0.0011569	2.1437	0.0024213	1129.4703002566011	24.309	0.16898	24.296	24.248	24.417	-0.012749	126	64	1.544062	0.037152052	1.5425426	313.00778	0	7.531372						259	8	3	NaN	NaN	NaN	0.026295	1	13573	13573		63.958	21.641	1	29133			21285	2919	12297	12651	16862	16862					-0.09795744515145088
QPDEEPMDM	9	2 Oxidation (M)	_QPDEEPM(Oxidation (M))DM(Oxidation (M))_		QPDEEPM(1)DM(1)		QPDEEPM(67)DM(67)	0	0	2		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.19954677395	2	562.199547	1122.38454	1.5412	0.00086645	-1.4945	-0.0008402	0.046696	2.6253E-05	562.1990970635655	13.18	0.14409	13.18	13.06	13.204	0	1305	49	0.83389086	0.029521227	0.83389086	338.10635	0	11.969574						156	7	3	NaN	NaN	NaN	0.024221	1	13769	13769		66.656	40.541	1	13575			21286	53	12298	12652	16863	16863		2;3			-0.17175627398273718
QPDEEPMDM	9	2 Oxidation (M)	_QPDEEPM(Oxidation (M))DM(Oxidation (M))_		QPDEEPM(1)DM(1)		QPDEEPM(76)DM(76)	0	0	2		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.19954677395	2	562.199547	1122.38454	1.1873	0.0006675	-1.1709	-0.00065829	0.016383	9.2103E-06	562.1998622400401	13.158	0.1917	13.148	13.052	13.244	-0.009469	1302	55	0.8357362	0.03320414	0.8342168	338.85458	0	13.46286						173	9	3	NaN	NaN	NaN	0.017076	1	13360	13360		75.698	47.91	1	14029			21287	53	12298	12652	16864	16864		2;3			-0.17175627398273718
QPDNIVYVM	9	Unmodified	_QPDNIVYVM_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5237579528	1	1078.52376	1077.51648	1.6031	0.001729	-1.6109	-0.0017374	-0.0078164	-8.4302E-06	1078.5229360617793	26.529	0.14481	26.529	26.481	26.625	0	132	85	1.5405227	0.049580693	1.5405227	312.46878	0	10.05661						306	7	3	NaN	NaN	NaN	0.01966	1	11856	11856		72.428	40.867	1	34285			21288	1281	12299	12653	16865	16865					-0.019176095283455652
QPDNIVYVM	9	Unmodified	_QPDNIVYVM_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5237579528	1	1078.52376	1077.51648	1.7049	0.0018388	-0.48674	-0.00052496	1.2182	0.0013138	1078.5235765256639	26.553	0.14475	26.542	26.47	26.614	-0.010645	132	76	1.5405227	0.044256806	1.5390033	312.46878	0	8.976746						244	7	2	NaN	NaN	NaN	0.011693	1	11546	11546		87.778	51.192	1	35708			21289	1281	12299	12653	16866	16866					-0.019176095283455652
QPDNIVYVM	9	Oxidation (M)	_QPDNIVYVM(Oxidation (M))_		QPDNIVYVM(1)		QPDNIVYVM(67)	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5186725749	1	1094.51867	1093.5114	2.0184	0.0022092	0.18053	0.0001976	2.199	0.0024068	1094.5191898274904	21.633	0.12053	21.633	21.585	21.705	0	165	91	1.5210435	0.05311656	1.5210435	308.4607	0	10.77179						176	6	2	NaN	NaN	NaN	0.023828	1	12537	12537		67.154	41.402	1	15423			21290	1281	12299	12654	16867	16867		139			-0.031619133909771335
QPDNIVYVM	9	Oxidation (M)	_QPDNIVYVM(Oxidation (M))_		QPDNIVYVM(1)		QPDNIVYVM(96)	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5186725749	1	1094.51867	1093.5114	1.6532	0.0018094	0.26637	0.00029155	1.9195	0.002101	1094.5186729691895	21.609	0.12032	21.595	21.571	21.691	-0.013897	165	94	1.5210435	0.054878473	1.5195241	308.4607	0	11.12912						247	6	3	NaN	NaN	NaN	0.0084155	1	12219	12219		95.62	61.921	1	19960			21291	1281	12299	12654	16868	16868		139			-0.031619133909771335
QPDPAIGVHL	10	Unmodified	_QPDPAIGVHL_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7850985588501	2	523.785099	1045.55564	1.3715	0.00071838	-2.013	-0.0010544	-0.64148	-0.000336	523.7840287065089	21.898	0.21675	21.884	21.836	22.053	-0.013895	1284	76	0.8468043	0.04610449	0.8452849	343.6481	0	18.709991						370	10	3	NaN	NaN	NaN	0.59589	1	10244	10244		15.175	7.5878	1	91351			21292	3390	12300	12655	16869	16869					0.03468858817518594
QPDPESVVL	9	Unmodified	_QPDPESVVL_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5044027192001	1	983.504403	982.497126	1.7677	0.0017385	1.2755	0.0012545	3.0432	0.002993	983.5035684141451	24.213	0.2655	24.213	24.116	24.381	0	282	94	1.4517976	0.055158734	1.4517976	294.8323	0	11.201691						347	12	3	NaN	NaN	NaN	0.030669	1	7964	7964		58.235	24.537	1	58917			21293	1638	12301	12656	16870	16870					0.005177574523941075
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8222123466501	2	570.822212	1139.62987	1.7865	0.0010198	-1.8162	-0.0010367	-0.029738	-1.6975E-05	570.8212333011445	20.357	0.21636	20.357	20.285	20.501	0	1227	61	0.88180584	0.036801934	0.88180584	357.46814	0	14.918823						385	10	4	NaN	NaN	NaN	0.43212	1	14443	14443		27.046	13.583	1	127740			21294	1517	12302	12657	16871	16871					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8222123466501	2	570.822212	1139.62987	1.3304	0.00075944	-1.1554	-0.00065952	0.17505	9.992E-05	570.8216048667541	20.381	0.21666	20.367	20.295	20.511	-0.014141	1227	64	0.88180584	0.038648307	0.8802864	357.4681	0	15.667328						379	10	4	NaN	NaN	NaN	0.27005	1	13975	13975		41.839	12.943	1	124410			21295	1517	12302	12657	16872	16872					0.06564201909031908
QPDSYFSVL	9	Unmodified	_QPDSYFSVL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5044027192	1	1055.5044	1054.49713	1.9625	0.0020714	1.299	0.0013711	3.2615	0.0034425	1055.5058197807098	29.329	0.24134	29.329	29.256	29.498	0	144	94	1.533442	0.0549134	1.533442	311.11844	0	11.141296						483	11	4	NaN	NaN	NaN	0.011693	1	10828	10828		87.778	37.817	1	68730			21296	4617	12303	12658	16873	16873					-0.027942425476112476
QPDSYFSVL	9	Unmodified	_QPDSYFSVL_					0	0	0		nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	nc|ENSG00000168397|Q9Y4P1-4|ATG4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5044027192	1	1055.5044	1054.49713	1.4096	0.0014879	1.3428	0.0014173	2.7525	0.0029052	1055.505674812032	29.328	0.21716	29.32	29.248	29.465	-0.0077209	144	103	1.533442	0.060224295	1.5319226	311.11844	0	12.218872						384	10	3	NaN	NaN	NaN	0.03618	1	10600	10600		52.78	5.2982	1	63300			21297	4617	12303	12658	16874	16874					-0.027942425476112476
QPDVVVVEL	9	Unmodified	_QPDVVVVEL_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5564382897002	1	997.556438	996.549162	2.0658	0.0020607	-0.90419	-0.00090198	1.1616	0.0011588	997.555611390746	28.363	0.21717	28.363	28.267	28.484	0	240	91	1.4766881	0.05326891	1.4766881	299.82858	0	10.815796						326	10	3	NaN	NaN	NaN	0.021751	1	8454	8454		69.782	37.329	1	37534			21298	4740	12304	12659	16875	16875					0.050749208661500234
QPEAISELS	9	Unmodified	_QPEAISELS_					0	0	0		ENST00000404625.5_1_7:22765527-22765611:+|nuORF	ENST00000404625.5_1_7:22765527-22765611:+|nuORF	ENST00000404625.5_1_7:22765527-22765611:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.4836672770999	1	973.483667	972.476391	1.5476	0.0015066	-2.0145	-0.0019611	-0.46688	-0.0004545	973.4831494991229	20.549	0.12029	20.549	20.501	20.622	0	336	40	1.419741	0.023170471	1.419741	288.3633	0	4.7061462						101	6	2	NaN	NaN	NaN	0.060816	1	7673	7673		42.318	0.47907	1	11883			21299	6841	12305	12660	16876	16876					-0.010948329272878254
QPEANPSHL	9	Unmodified	_QPEANPSHL_					0	0	0		ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.7434307094	2	496.743431	991.472308	2.1673	0.0010766	-3.0775	-0.0015287	-0.91019	-0.00045213	496.7419681156312	13.877	0.2161	13.877	13.805	14.021	0	1353	76	0.8043377	0.046194315	0.8043377	326.64572	0	18.759766						360	10	3	NaN	NaN	NaN	0.030545	1	8257	8257		58.398	35.063	1	37990			21300	6304	12306	12661	16877	16877					-0.023768776303313643
QPEANPSHL	9	Unmodified	_QPEANPSHL_					0	0	0		ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.7434307094	2	496.743431	991.472308	1.0298	0.00051154	-1.7401	-0.00086438	-0.7103	-0.00035284	496.74288928144864	13.901	0.21575	13.89	13.794	14.01	-0.010672	1350	67	0.80618626	0.040644407	0.8046668	327.39642	0	16.50592						311	10	2	NaN	NaN	NaN	0.25448	1	8090	8090		21.835	8.3719	1	35286			21301	6304	12306	12661	16878	16878					-0.023768776303313643
QPEEVFDVL	9	Unmodified	_QPEEVFDVL_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3;ENST00000488618.1_1_20:43595209-43600800:+|nuORF;ENST00000480745.5_1_20:43595209-43601992:+|nuORF;STK4|p.T175Yfs*45|1|0.21|ENSG00000101109|chr20:44987291-44987292|-/T|frameshift_variant;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5306174697	1	1075.53062	1074.52334	1.8706	0.0020118	1.8142	0.0019513	3.6848	0.0039631	1075.5334901195347	30.029	0.048273	30.029	30.004	30.053	0	132	91	1.5405227	0.05309403	1.5405227	312.4798	0	10.769623						153	3	2	NaN	NaN	NaN	0.01966	1	11747	11747		72.428	46.313	1	24197			21302	1469	12307	12662	16879	16879					-0.010939733761233583
QPEGEEPEM	9	Oxidation (M)	_QPEGEEPEM(Oxidation (M))_		QPEGEEPEM(1)		QPEGEEPEM(40)	0	0	1		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-5|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2082290858	2	531.208229	1060.40191	0.80034	0.00042515	-1.1397	-0.00060544	-0.3394	-0.00018029	531.208267142839	13.062	0.14377	13.052	12.98	13.124	-0.00947	1317	40	0.8265074	0.024000287	0.82498795	335.35022	0	9.737946						122	7	2	NaN	NaN	NaN	0.070055	1	10853	10853		40.154	19.598	1	9877.1			21303	1881	12308	12663	16880	16880		213			-0.12587963800979196
QPEGEEPEM	9	Oxidation (M)						0	0	1		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;nc|ENSG00000112655|Q13308-5|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.208229	1060.40191	1.5014	0.00079756	-1.2328	-0.00065487	0.26861	0.00014269	531.20829289634	13.06	0.096077	13.06	12.988	13.084	0	1320	31	0.824661	0.018462718	0.824661	334.60104		7.4911194	0.0039705	-4.7726E-05	-0.00016347	NaN	40.154	71	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4206.2			21304	1881	12308	12663				213			-0.12587963800979196
QPEKEELAC	9	Unmodified	_QPEKEELAC_					0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.4822870685998	1	1046.48229	1045.47501	1.4887	0.0015579	5.1064	0.0053438	6.5951	0.0069017	1046.4863907266315	30.632	0.12067	30.632	30.608	30.728	0	144	88	1.533442	0.051348805	1.533442	311.15308	0	10.4192505						154	6	2	NaN	NaN	NaN	0.38313	1	10433	10433		14.425	2.8766	1	17581	+		21305	12892	12309	12664	16881	16881					-0.045907902876933804
QPEKEELAC	9	Unmodified						0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1046.48229	1045.47501	1.4887	0.0015579	5.1064	0.0053438	6.5951	0.0069017	1046.4863907266315	30.632	0.12067	30.632	30.608	30.728	0	144	88	1.533442	0.051348805	1.533442	311.15308		10.4192505	-0.0086654	-0.0011114	0.00075972	NaN	14.425	154	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17581	+		21306	12892	12309	12664							-0.045907902876933804
QPEKEELAC	9	Unmodified						0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1046.48229	1045.47501	1.1912	0.0012466	7.0309	0.0073577	8.2221	0.0086043	1046.4882640844585	30.655	0.12066	30.649	30.577	30.698	-0.0057545	144	67	1.533442	0.038943887	1.5319226	311.15308		7.9021606	0.0086654	0.00090262	-0.00075972	NaN	14.425	144	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17783	+		21307	12892	12309	12664							-0.045907902876933804
QPELPEVIAM	10	Unmodified	_QPELPEVIAM_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7942746491501	2	563.794275	1125.574	2.0171	0.0011372	-4.0952	-0.0023088	-2.0781	-0.0011716	563.7946131642244	29.836	0.16893	29.836	29.787	29.956	0	1209	103	0.892844	0.062475502	0.892844	361.99683	0	25.3302						368	8	4	NaN	NaN	NaN	0.41022	1	13911	13911		28.896	11.097	1	48868			21308	13719	12310	12665	16882	16882					0.0162323267722968
QPELPEVIAM	10	Unmodified	_QPELPEVIAM_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7942746491501	2	563.794275	1125.574	1.0923	0.00061585	-5.7682	-0.0032521	-4.6758	-0.0026362	564.2907995125096	29.835	0.21712	29.828	29.755	29.972	-0.0070667	1203	109	0.8965218	0.06616485	0.89500237	363.48798	0	26.82602						443	10	4	NaN	NaN	NaN	0.43797	1	13478	13478		33.425	5.6365	1	60525			21309	13719	12310	12665	16883	16883					0.0162323267722968
QPELPEVIAM	10	Oxidation (M)	_QPELPEVIAM(Oxidation (M))_		QPELPEVIAM(1)		QPELPEVIAM(64)	0	0	1		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.5761874538	1	1142.57619	1141.56891	2.9442	0.003364	-1.144	-0.0013071	1.8003	0.002057	1142.575064667645	25.66	0.096483	25.66	25.564	25.66	0	87	61	1.5670487	0.035347342	1.5670487	317.6235	0	7.1645203						130	5	2	NaN	NaN	NaN	0.019815	1	14519	14519		63.765	23.611	1	10390			21310	13719	12310	12666	16884	16884		660			0.003789288145981118
QPELPEVIAM	10	Oxidation (M)						0	0	1		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1142.57619	1141.56891	2.5782	0.0029458	0.060983	6.9677E-05	2.6392	0.0030154	1142.5753665011885	25.636	0.096462	25.624	25.576	25.672	-0.0116	87	49	1.5670487	0.028271914	1.5655292	317.6235		5.7304077	-0.017991	0.0007629	-0.00075972	NaN	63.765	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8130.8			21311	13719	12310	12666				660			0.003789288145981118
QPEPETWEQIL	11	Unmodified	_QPEPETWEQIL_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.3353495116501	2	685.33535	1368.65615	2.0533	0.0014072	-4.0648	-0.0027857	-2.0115	-0.0013786	685.332607360258	30.125	0.14482	30.125	30.077	30.222	0	1104	73	0.9570911	0.04395312	0.9570911	387.21033	0	17.782104						145	7	2	NaN	NaN	NaN	0.50669	1	19785	19785		18.233	6.4946	1	14569			21312	867	12311	12667	16885	16885					-0.013435737101417544
QPEPETWEQIL	11	Unmodified	_QPEPETWEQIL_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3353495116501	2	685.33535	1368.65615	1.2281	0.00084168	-1.8325	-0.0012558	-0.60432	-0.00041416	685.3323944427173	30.124	0.096535	30.118	30.094	30.19	-0.0064106	1098	70	0.960755	0.042114913	0.9592356	388.69263	0	17.038422						174	5	3	NaN	NaN	NaN	0.40559	1	18860	18860		21.85	2.514	1	13339			21313	867	12311	12667	16886	16886					-0.013435737101417544
QPERDWVL	8	Unmodified	_QPERDWVL_					0	0	0		ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000497196.5_1_22:38889517-38891019:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	ENST00000432525.5_1_22:38886367-38903636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7694484946501	2	521.769448	1041.52434	1.9178	0.0010006	1.6851	0.00087925	3.6029	0.0018799	521.7681613736771	21.922	0.21675	21.908	21.836	22.053	-0.013897	1290	82	0.84311575	0.04979825	0.8415963	342.16843	0	20.210022						811	10	4	NaN	NaN	NaN	0.16458	1	10069	10069		52.78	5.6439	1	515330			21314	1206	12312	12668	16887	16887					0.005242857834218739
QPEREEKRVL	10	Unmodified	_QPEREEKRVL_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.5737259028666	3	428.573726	1282.69935	1.9267	0.00082572	-2.8899	-0.0012385	-0.96318	-0.0004128	428.5727682744303	11.428	0.14411	11.428	11.38	11.524	0	1410	34	0.76917666	0.02037841	0.76917666	467.08743	0	12.374939						104	7	3	NaN	NaN	NaN	0.75126	1	18476	18476		4.5433	0.63464	1	7350.2			21315	2582	12313	12669	16888	16888					0.06930660857779003
QPFDFPCHLA	10	Unmodified	_QPFDFPCHLA_					0	0	0			REV__ENST00000403980.1_1_2:42180111-42180432:-|nuORF	REV__ENST00000403980.1_1_2:42180111-42180432:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7711339038501	2	587.771134	1173.52771	1.4119	0.00082989	3.9299	0.0023099	5.3419	0.0031398	587.7734272166018	36.036	0.16891	36.036	35.988	36.157	0	1212	88	0.8910048	0.05331379	0.8910048	361.07245	0	21.60498						196	8	3	NaN	NaN	NaN	0.73444	1	15593	15593		5.6942	2.1244	1	17047	+		21316	12045	12314	12670	16889	16889					-0.05210787434202757
QPFNYEWE	8	Unmodified	_QPFNYEWE_					0	0	0			REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.73781401525	2	556.737814	1111.46108	1.1522	0.00064149	1.7835	0.00099295	2.9357	0.0016344	557.2392714243041	34.299	0.19274	34.298	34.225	34.418	-0.0012474	1272	88	0.854179	0.05344075	0.8526596	346.3736	0	21.670471						471	9	4	NaN	NaN	NaN	0.6053	1	12949	12949		24.961	1.8434	1	55026	+		21317	12163	12315	12671	16890	16890					-0.090196997244675
QPFQVGDLL	9	Unmodified	_QPFQVGDLL_					0	0	0		nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2;ENST00000460580.5_1_1:214454597-214488183:+|nuORF	nc|ENSG00000143499|Q9NRG4-2|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7741995215501	2	508.7742	1015.53385	1.2017	0.00061142	-1.0674	-0.00054304	0.1344	6.8377E-05	508.7735693884554	30.897	0.21718	30.897	30.849	31.066	0	1293	55	0.84127116	0.033200562	0.84127116	341.5338	0	13.478546						241	10	4	NaN	NaN	NaN	0.074859	1	9203	9203		39.459	5.02	1	33544			21318	3430	12316	12672	16891	16891					0.026700540689716945
QPFQVGDLL	9	Unmodified	_QPFQVGDLL_					0	0	0		nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2;ENST00000460580.5_1_1:214454597-214488183:+|nuORF	nc|ENSG00000143499|Q9NRG4-2|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7741995215501	2	508.7742	1015.53385	0.9507	0.00048369	-1.3708	-0.00069745	-0.42015	-0.00021376	508.7736187244236	30.896	0.19311	30.891	30.842	31.035	-0.0057545	1293	61	0.84127116	0.036901534	0.8397517	341.5338	0	14.981049						206	9	3	NaN	NaN	NaN	0.12328	1	9029	9029		32.453	14.654	1	36455			21319	3430	12316	12672	16892	16892					0.026700540689716945
QPFREAIAL	9	Unmodified	_QPFREAIAL_					0	0	0		nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7954662799	2	522.795466	1043.57638	2.0185	0.0010552	-1.4794	-0.0007734	0.53911	0.00028184	522.7946223908357	22.67	0.21708	22.67	22.597	22.814	0	1263	103	0.85970795	0.06266481	0.85970795	348.89325	0	25.431122						507	10	5	NaN	NaN	NaN	0.015029	1	10367	10367		78.289	25.51	1	255660			21320	5281	12317	12673	16893	16893					0.05633449197171103
QPFREAIAL	9	Unmodified	_QPFREAIAL_					0	0	0		nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7954662799	2	522.795466	1043.57638	1.737	0.00090809	-0.69635	-0.00036405	1.0406	0.00054404	522.7951354292562	22.693	0.21696	22.68	22.607	22.824	-0.01354	1260	103	0.8615505	0.06266481	0.8600311	349.641	0	25.431122						525	10	4	NaN	NaN	NaN	0.01966	1	10163	10163		72.428	14.193	1	254480			21321	5281	12317	12673	16894	16894					0.05633449197171103
QPFWTFFA	8	Unmodified	_QPFWTFFA_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.4985294803	1	1043.49853	1042.49125	1.1646	0.0012153	5.9319	0.0061899	7.0965	0.0074052	1043.5039096311116	27.615	0.07239	27.605	27.581	27.653	-0.009552	165	64	1.5210435	0.037203312	1.5195241	308.6488	0	7.5492554						130	4	2	NaN	NaN	NaN	0.76633	1	10107	10107		13.737	0.73422	1	13997			21322	758	12318	12674	16895	16895					-0.028292962686236933
QPGEILNFRED	11	Unmodified	_QPGEILNFRED_					0	0	0			REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1	REV__tr|U7SMM7|U7SMM7_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01751PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3253161416	2	659.325316	1316.63608	1.9412	0.0012799	-0.59277	-0.00039083	1.3484	0.00088903	659.3249928314606	25.781	0.19301	25.781	25.708	25.901	0	1110	73	0.95342636	0.04399103	0.95342636	385.88	0	17.804474						283	9	5	NaN	NaN	NaN	0.66717	1	19058	19058		9.6116	0	1	46079	+		21323	13436	12319	12675	16896	16896					-0.009573246501076937
QPGPAAPA	8	Unmodified	_QPGPAAPA_					0	0	0		ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073	1	708.367515	707.360239	0.71736	0.00050816	8.7006	0.0061632	9.418	0.0066714	708.3732793456405	42.65	0.14381	42.65	42.578	42.722	0	696	55	1.2044523	0.032497168	1.2044523	245.91321	0	6.634964						154	7	2	NaN	NaN	NaN	0.84692	1	3371	3371		1.4396	0	1	15691			21324	6814	12320	12676	16897	16897					-0.0051468691667651
QPGPAAPA	8	Unmodified						0	0	0		ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	708.367515	707.360239	0.35634	0.00025242	8.6866	0.0061533	9.0429	0.0064057	708.3734785046851	42.624	0.23992	42.634	42.538	42.778	0.0097351	693	58	1.2062578	0.034308076	1.2047384	246.28183		7.0046997	-0.0080396	-5.1741E-06	0.00014303	NaN	1.4396	176	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12952			21325	6814	12320	12676							-0.0051468691667651
QPGSTPLDLF	10	Unmodified	_QPGSTPLDLF_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.77693917575	2	537.776939	1073.53933	1.986	0.001068	-8.561	-0.0046039	-6.575	-0.0035359	538.2718002141513	30.149	0.28965	30.149	29.98	30.27	0	1257	79	0.86339295	0.047920167	0.86339295	350.26135	0	19.440247						263	13	2	NaN	NaN	NaN	0.6772	1	11710	11710		9.6116	0	1	20195			21326	1781	12321	12677	16898	16898					0.005497328607589225
QPGSTPLDLF	10	Unmodified						0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.776939	1073.53933	1.08	0.00058078	-11.128	-0.0059842	-10.048	-0.0054035	537.7705255577654	29.859	0.072388	29.852	29.828	29.9	-0.0070648	1281	37	0.84864825	0.022126555	0.8471288	344.27975		8.976288	-0.1488	-0.001353	-0.008132	NaN	9.6116	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7018.3			21327	1781	12321	12677							0.005497328607589225
QPHPIDPLL	9	Unmodified	_QPHPIDPLL_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2900167612501	2	515.290017	1028.56548	1.7109	0.00088159	-6.8138	-0.0035111	-5.103	-0.0026295	515.288095653735	23.513	0.19302	23.5	23.403	23.596	-0.013294	1290	67	0.84311575	0.040582895	0.8415963	342.2247	0	16.472778						211	8	2	NaN	NaN	NaN	0.14787	1	9528	9528		28.896	1.1068	1	43667			21328	3488	12322	12678	16899	16899					0.05234046822897653
QPIAFDIII	9	Unmodified	_QPIAFDIII_					0	0	0			REV__DPYS|p.M97I|1|0.47|ENSG00000147647|chr8:104451378-104451378|C/T|missense_variant	REV__DPYS|p.M97I|1|0.47|ENSG00000147647|chr8:104451378-104451378|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.3025928202501	2	515.302593	1028.59063	0.75275	0.0003879	-1.0535	-0.0005429	-0.30079	-0.000155	515.3022955973748	35.336	0.19291	35.336	35.287	35.48	-4.5776E-05	1275	61	0.85233563	0.03686565	0.8508162	345.96695	0	14.963928						295	9	4	NaN	NaN	NaN	0.089764	1	9531	9531		37.302	4.8496	1	66001	+		21329	8329	12323	12679	16900	16900					0.07748101625475101
QPIDVTVTL	9	Unmodified	_QPIDVTVTL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5564382897002	1	985.556438	984.549162	1.9044	0.0018769	-1.4229	-0.0014023	0.4815	0.00047455	985.5547094615789	27.519	0.26547	27.519	27.471	27.736	0	237	88	1.4784646	0.05152893	1.4784646	300.2392	0	10.464203						389	12	3	NaN	NaN	NaN	0.010404	1	8045	8045		91.563	12.364	1	51445			21330	1431	12324	12680	16901	16901					0.056269208661547054
QPIDVTVTL	9	Unmodified	_QPIDVTVTL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5564382897002	1	985.556438	984.549162	1.3949	0.0013748	-1.1556	-0.0011389	0.23934	0.00023588	985.5544674070849	27.518	0.14479	27.508	27.484	27.629	-0.009552	234	94	1.4802408	0.05508852	1.4787214	300.5999	0	11.187073						279	7	3	NaN	NaN	NaN	0.01452	1	7870	7870		79.199	15.241	1	37205			21331	1431	12324	12680	16902	16902					0.056269208661547054
QPIGPEDVL	9	Unmodified	_QPIGPEDVL_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5094880971	1	967.509488	966.502212	2.2268	0.0021544	-0.69813	-0.00067544	1.5287	0.001479	967.5087607950962	25.829	0.12071	25.817	25.769	25.89	-0.011602	297	43	1.4428991	0.024922252	1.4413797	293.09225	0	5.0624084						86	6	2	NaN	NaN	NaN	0.47587	1	7375	7375		10.605	0	1	6103.1			21332	1711	12325	12681	16903	16903					0.017620613149915698
QPIGPEDVL	9	Unmodified						0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	967.509488	966.502212	2.187	0.002116	-0.63194	-0.00061141	1.5551	0.0015046	967.5081403943651	25.853	0.14476	25.853	25.757	25.901	0	300	43	1.4411188	0.024927616	1.4411188	292.73065		5.0634766	0.01799	3.7296E-05	-0.00013041	NaN	10.605	91	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5850.8			21333	1711	12325	12681							0.017620613149915698
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.27456366229995	2	508.274564	1014.53457	1.1491	0.00058408	-0.17851	-9.0732E-05	0.97063	0.00049335	508.2743413540389	14.117	0.19167	14.106	14.058	14.25	-0.010672	1293	79	0.84127116	0.047935665	0.8397517	341.5383	0	19.460846						314	9	3	NaN	NaN	NaN	0.41766	1	8981	8981		13.003	1.4544	1	33986			21334	4128	12326	12682	16904	16904					0.027888487179893673
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.77419952155	2	502.7742	1003.53385	1.5204	0.0007644	-1.3961	-0.00070194	0.12422	6.2456E-05	502.77312623851884	29.015	0.28963	29.015	28.943	29.232	0	1305	70	0.83389086	0.042439044	0.83389086	338.5917	0	17.231873						267	13	3	NaN	NaN	NaN	0.25448	1	8732	8732		21.835	0	1	41135			21335	7955	12327	12683	16905	16905					0.032220540689422705
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5411225765	1	1004.54112	1003.53385	2.0158	0.002025	-0.93028	-0.00093451	1.0855	0.0010904	1004.5406391808568	29.015	0.24135	29.015	28.967	29.208	0	216	178	1.4908947	0.10485709	1.4908947	302.68436	0	21.288269						859	11	4	NaN	NaN	NaN	0.0021374	1	8734	8734		110.61	52.37	1	321130			21336	7955	12327	12683	16906	16906					0.032220540689422705
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.77419952155	2	502.7742	1003.53385	1.0657	0.00053582	-1.4408	-0.00072441	-0.37509	-0.00018859	502.7735752457626	29.014	0.28962	29.007	28.958	29.248	-0.0077209	1302	76	0.8357362	0.0461244	0.8342168	339.341	0	18.728271						377	13	3	NaN	NaN	NaN	0.33629	1	8559	8559		16.584	0	1	68900			21337	7955	12327	12683	16907	16907					0.032220540689422705
QPINFSVSL	9	Unmodified						0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1004.54112	1003.53385	1.7589	0.0017669	-0.29008	-0.00029139	1.4689	0.0014755	1004.5411292319836	29.038	0.24134	29.031	28.958	29.2	-0.0077229	216	148	1.4908947	0.087056875	1.4893752	302.68436		17.674438	0.0078112	0.00031963	-0.00075972	NaN	110.61	814	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286200			21338	7955	12327	12683							0.032220540689422705
QPIPILYEHQL	11	Unmodified	_QPIPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.8744448824001	2	675.874445	1349.73434	1.8664	0.0012614	-3.6755	-0.0024842	-1.8092	-0.0012228	675.872103157378	25.66	0.16893	25.66	25.588	25.757	0	1101	133	0.95892316	0.08049393	0.95892316	388.0059	0	32.570007						388	8	5	NaN	NaN	NaN	1.3566E-11	1	19546	19546		112.27	69.278	1	64744			21339	2147	12328	12684	16908	16908					0.07345903665759579
QPIPILYEHQL	11	Unmodified	_QPIPILYEHQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.8744448824001	2	675.874445	1349.73434	1.7196	0.0011623	-2.9926	-0.0020226	-1.273	-0.00086037	675.8723624483642	25.66	0.16886	25.648	25.6	25.769	-0.011602	1101	133	0.95892316	0.08049393	0.9574037	388.0059	0	32.570007						358	8	4	NaN	NaN	NaN	0.0044011	1	18669	18669		74.737	40.283	1	62703			21340	2147	12328	12684	16909	16909					0.07345903665759579
QPIRENDDQVL	11	Unmodified	_QPIRENDDQVL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.8360480033999	2	663.836048	1325.65754	2.3281	0.0015455	-1.4941	-0.00099183	0.83405	0.00055367	664.3365830658529	17.402	0.11999	17.388	17.364	17.484	-0.013569	1128	37	0.9424274	0.022007346	0.94090796	381.40146	0	8.906403						98	6	3	NaN	NaN	NaN	0.062807	1	18330	18330		46.588	26.139	1	8466.1			21341	4860	12329	12685	16910	16910					0.007740603785805433
QPISSPVIL	9	Unmodified	_QPISSPVIL_					0	0	0		nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-4|MINPP1	nc|ENSG00000107789|Q9UNW1-4|MINPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.5666090455001	1	953.566609	952.559333	1.5645	0.0014918	0.35909	0.00034241	1.9236	0.0018342	953.5667334754933	27.566	0.28955	27.557	27.484	27.774	-0.009552	264	169	1.4624695	0.09962571	1.46095	297.12863	0	20.240906						633	13	5	NaN	NaN	NaN	0.019103	1	7016	7016		73.133	9.1747	1	207970			21342	1644	12330	12686	16911	16911					0.08115528591372367
QPISVDWCF	9	Unmodified	_QPISVDWCF_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.4975432022998	1	1094.49754	1093.49027	1.6776	0.0018361	0.39977	0.00043754	2.0774	0.0022737	1094.4986570092308	32.732	0.21716	32.732	32.635	32.852	0	126	70	1.544062	0.040694714	1.544062	313.12878	0	8.252686						340	10	3	NaN	NaN	NaN	0.026295	1	12526	12526		63.958	29.519	1	35817			21343	6157	12331	12687	16912	16912					-0.052738786998588694
QPISVDWCF	9	Unmodified						0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1094.49754	1093.49027	1.4487	0.0015856	-0.84115	-0.00092064	0.60758	0.000665	1095.497382787007	32.537	0.048294	32.534	32.51	32.558	-0.0031052	114	55	1.5511382	0.03183961	1.5496187	314.5638		6.456909	-0.098586	-0.0011241	0.0027784	NaN	63.958	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5428.6			21344	6157	12331	12687							-0.052738786998588694
QPITCTSLVI	10	Unmodified	_QPITCTSLVI_					0	0	0			REV__ENSG00000221996|ENST00000624801|OR52B4	REV__ENSG00000221996|ENST00000624801|OR52B4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7968173381	2	537.796817	1073.57908	2.3149	0.001245	7.4063	0.0039831	9.7212	0.005228	537.8009472061576	26.191	0.16894	26.191	26.143	26.312	0	1266	64	0.85786515	0.03869009	0.85786515	348.01862	0	15.695801						299	8	4	NaN	NaN	NaN	0.37681	1	11728	11728		24.562	1.4444	1	52983	+		21345	11305	12332	12688	16913	16913					0.04523536539818451
QPITCTSLVI	10	Unmodified						0	0	0			REV__ENSG00000221996|ENST00000624801|OR52B4	REV__ENSG00000221996|ENST00000624801|OR52B4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.796817	1073.57908	2.3149	0.001245	7.4063	0.0039831	9.7212	0.005228	537.8009472061576	26.191	0.16894	26.191	26.143	26.312	0	1266	64	0.85786515	0.03869009	0.85786515	348.01862		15.695801	-0.0063835	2.8818E-06	0.00075972	NaN	24.562	299	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52983	+		21346	11305	12332	12688							0.04523536539818451
QPITCTSLVI	10	Unmodified						0	0	0			REV__ENSG00000221996|ENST00000624801|OR52B4	REV__ENSG00000221996|ENST00000624801|OR52B4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.796817	1073.57908	1.6218	0.00087222	7.3989	0.0039791	9.0208	0.0048513	537.800822754154	26.215	0.16887	26.204	26.156	26.324	-0.011137	1266	103	0.85786515	0.06260389	0.8563457	348.01862		25.397125	0.0063835	-5.0626E-06	-0.00075972	NaN	24.562	332	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55464	+		21347	11305	12332	12688							0.04523536539818451
QPLAAIAP	8	Unmodified	_QPLAAIAP_					0	0	0		nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-5|SFI1	nc|ENSG00000198089|A8K8P3-5|SFI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.73434607954994	2	390.734346	779.454139	1.1235	0.00043899	-3.9294	-0.0015354	-2.8059	-0.0010964	390.7323937899497	28.821	0.12068	28.813	28.789	28.909	-0.0083504	1326	55	0.8209676	0.033243716	0.81944823	334.63724	0	13.550598						119	6	2	NaN	NaN	NaN	0.84876	1	4403	4403		0.39566	0	1	14371			21348	5755	12333	12689	16914	16914					0.05559032185601609
QPLAGSKG	8	Unmodified	_QPLAGSKG_					0	0	0		nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.4202791593001	1	757.420279	756.413003	1.528	0.0011573	5.8594	0.004438	7.3874	0.0055953	757.4254573233056	29.377	0.096491	29.377	29.329	29.425	0	567	43	1.2819146	0.02516234	1.2819146	261.4061	0	5.131073						58	5	2	NaN	NaN	NaN	0.83211	1	4176	4176		4.9097	0	1	3097.4			21349	1622	12334	12690	16915	16915					0.025052711461398758
QPLAGSKG	8	Unmodified	_QPLAGSKG_					0	0	0		nc|ENSG00000106948|Q7Z591-3|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	nc|ENSG00000106948|Q7Z591-3|AKNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.4202791593001	1	757.420279	756.413003	1.7906	0.0013563	5.6057	0.0042459	7.3963	0.0056021	757.4240315798479	30.173	0.072409	30.173	30.149	30.222	0	558	52	1.2873057	0.03054297	1.2873057	262.50543	0	6.2282715						90	4	2	NaN	NaN	NaN	0.84455	1	4177	4177		2.7852	0	1	6846.6			21350	1622	12334	12690	16916	16916					0.025052711461398758
QPLCSRREYFA	11	Unmodified	_QPLCSRREYFA_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.22756123743335	3	457.227561	1368.66085	1.8008	0.00082337	4.4786	0.0020477	6.2794	0.0028711	457.2297451395784	17.114	0.048061	17.1	17.076	17.124	-0.013569	1440	31	0.7506418	0.018544972	0.7491224	455.52728	0	11.253998						49	3	2	NaN	NaN	NaN	0.73717	1	18861	18861		2.1547	0.47419	1	5075	+		21351	10394	12335	12691	16917	16917					-0.008729680483611446
QPLDNDIEE	9	Unmodified	_QPLDNDIEE_					0	0	0			REV__ENSG00000109686|ENST00000604030|SH3D19	REV__ENSG00000109686|ENST00000604030|SH3D19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.4793101807	1	1072.47931	1071.47203	1.0311	0.0011058	-9.7384	-0.010444	-8.7073	-0.0093384	1072.4699065474656	30.052	0.1448	30.045	29.997	30.142	-0.0064106	147	67	1.5316714	0.038960457	1.530152	310.69565	0	7.9030457						199	7	3	NaN	NaN	NaN	0.077759	1	11313	11313		39.039	7.3637	1	19516	+		21352	9062	12336	12692	16918	16918					-0.06084342140843546
QPLDNDIEE	9	Unmodified						0	0	0			REV__ENSG00000109686|ENST00000604030|SH3D19	REV__ENSG00000109686|ENST00000604030|SH3D19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1072.47931	1071.47203	1.0311	0.0011058	-9.7384	-0.010444	-8.7073	-0.0093384	1072.4699065474656	30.052	0.1448	30.045	29.997	30.142	-0.0064106	147	67	1.5316714	0.038960457	1.530152	310.69565		7.9030457	-0.003669	-0.00028302	-0.001645	NaN	39.039	199	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19516	+		21353	9062	12336	12692							-0.06084342140843546
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.32332826235	2	483.323328	964.632104	1.0816	0.00052278	-0.6091	-0.00029439	0.47253	0.00022838	483.3226308339719	35.482	0.048229	35.482	35.458	35.506	0	1266	142	0.85786515	0.08661091	0.85786515	348.5161	0	35.186523						303	3	3	NaN	NaN	NaN	0.12945	1	7477	7477		31.561	0	1	42631			21354	5241	12337	12693	16919	16919					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.6393800581001	1	965.63938	964.632104	1.3685	0.0013214	-0.59865	-0.00057808	0.76981	0.00074336	965.6384439796145	36.085	0.16891	36.085	36.012	36.181	0	225	49	1.4855686	0.028403997	1.4855686	301.76782	0	5.769806						139	8	2	NaN	NaN	NaN	0.056143	1	7478	7478		44.302	0	1	9492			21355	5241	12337	12693	16920	16920					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.6393800581001	1	965.63938	964.632104	1.453	0.001403	0.6163	0.00059512	2.0693	0.0019982	965.6403494292721	35.482	0.43406	35.482	35.434	35.868	0	222	199	1.4873441	0.11727917	1.4873441	302.12848	0	23.823242						1257	19	5	NaN	NaN	NaN	0.023074	1	7480	7480		68.108	0	1	491450			21356	5241	12337	12693	16921	16921					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.32332826235	2	483.323328	964.632104	1.1329	0.00054757	-2.24	-0.0010826	-1.1071	-0.00053507	483.32245096120727	35.48	0.12056	35.481	35.409	35.529	0.00052643	1263	136	0.85970795	0.08292532	0.8581885	349.26477	0	33.68924						292	6	3	NaN	NaN	NaN	0.094712	1	7322	7322		36.586	0	1	31875			21357	5241	12337	12693	16922	16922					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.6393800581001	1	965.63938	964.632104	1.4128	0.0013643	-1.0309	-0.00099546	0.38197	0.00036885	965.6376789858375	35.963	0.048264	35.964	35.94	35.988	0.0011024	222	49	1.4873441	0.028403997	1.4858247	302.1285	0	5.769806						65	3	2	NaN	NaN	NaN	0.030391	1	7323	7323		58.599	0	1	5586.2			21358	5241	12337	12693	16923	16923					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.6393800581001	1	965.63938	964.632104	2.2048	0.002129	-0.64697	-0.00062474	1.5578	0.0015043	965.6402812889314	36.324	0.072227	36.325	36.277	36.349	0.0011024	216	49	1.4908947	0.028403997	1.4893752	302.84973	0	5.769806						60	4	2	NaN	NaN	NaN	0.12945	1	7325	7325		31.561	0	1	3339.5			21359	5241	12337	12693	16924	16924					0.1483728238479216
QPLIIAVVL	9	Unmodified	_QPLIIAVVL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	965.6393800581001	1	965.63938	964.632104	1.2374	0.0011949	0.57246	0.00055279	1.8099	0.0017477	965.6397241856768	35.456	0.40989	35.457	35.409	35.819	0.00053024	219	190	1.4891195	0.11193037	1.4876001	302.48914	0	22.736725						1287	18	5	NaN	NaN	NaN	0.014943	1	7326	7326		78.398	0	1	483400			21360	5241	12337	12693	16925	16925					0.1483728238479216
QPLLHCPGLG	10	Unmodified	_QPLLHCPGLG_					0	0	0			REV__ENST00000278407.8_1_11:57382125-57382308:+|nuORF	REV__ENST00000278407.8_1_11:57382125-57382308:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7762192817501	2	517.776219	1033.53789	1.2984	0.0006723	6.2731	0.0032481	7.5716	0.0039204	517.7794253059928	27.156	0.048279	27.146	27.146	27.194	-0.010126	1263	46	0.85970795	0.027635753	0.8581885	348.93732	0	11.216766						60	3	2	NaN	NaN	NaN	0.67523	1	9728	9728		9.746	0.78402	1	6307.2	+		21361	11602	12338	12694	16926	16926					0.022458202910002
QPLQKEPSL	9	Unmodified	_QPLQKEPSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2927564154501	2	520.292756	1038.57096	1.6498	0.00085837	-0.58164	-0.00030262	1.0682	0.00055575	520.2929663243799	16.802	0.19174	16.789	16.741	16.933	-0.013294	1257	61	0.86339295	0.03684169	0.8618735	350.41068	0	14.952332						303	9	3	NaN	NaN	NaN	0.04743	1	9945	9945		48.002	14.577	1	38588			21362	4257	12339	12695	16927	16927					0.053217256147036096
QPLQKEPSL	9	Unmodified						0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.292756	1038.57096	1.8546	0.00096494	-2.6824	-0.0013957	-0.82784	-0.00043072	520.2916705863777	16.782	0.1918	16.782	16.758	16.949	0	1257	67	0.86339295	0.040521502	0.86339295	350.4107		16.44577	-0.0037125	-0.0011064	0.00075972	NaN	48.002	309	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39792			21363	4257	12339	12695							0.053217256147036096
QPLSKTWEL	9	Unmodified	_QPLSKTWEL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.30058144755	2	551.300581	1100.58661	1.44	0.00079386	-2.305	-0.0012708	-0.86504	-0.0004769	551.2997384261271	22.477	0.12035	22.477	22.429	22.549	0	1245	61	0.87076044	0.036833763	0.87076044	353.1402	0	14.93808						236	6	4	NaN	NaN	NaN	0.13602	1	12873	12873		30.61	7.2757	1	36292			21364	2296	12340	12696	16928	16928					0.04034012131751297
QPLSKTWEL	9	Unmodified	_QPLSKTWEL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000121481|Q99496-2|RNF2	ENSG00000121481|ENST00000367510|RNF2	ENSG00000121481|ENST00000367510|RNF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.30058144755	2	551.300581	1100.58661	1.2256	0.00067569	-3.2977	-0.001818	-2.0721	-0.0011424	551.3001040314474	22.5	0.12057	22.486	22.438	22.559	-0.013731	1245	73	0.87076044	0.044190943	0.869241	353.1402	0	17.921814						271	6	4	NaN	NaN	NaN	0.2961	1	12537	12537		19.164	0.045272	1	35638			21365	2296	12340	12696	16929	16929					0.04034012131751297
QPLYLNLHAY	10	Unmodified	_QPLYLNLHAY_					0	0	0		ENST00000579314.5_1_17:61565977-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	ENST00000579314.5_1_17:61565977-61574724:+|nuORF	ENST00000579314.5_1_17:61565977-61574724:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2205125215667	3	411.220513	1230.63971	1.3186	0.00054223	-8.9147	-0.0036659	-7.5961	-0.0031237	411.21674352260044	20.285	0.072153	20.285	20.261	20.333	0	1443	70	0.7487872	0.042655706	0.7487872	454.91034	0	25.914612						87	4	2	NaN	NaN	NaN	0.75966	1	17274	17274		1.6985	0.17289	1	8122.9			21366	4034	12341	12697	16930	16930					0.03361389914425672
QPMQPTPSM	9	2 Oxidation (M)	_QPM(Oxidation (M))QPTPSM(Oxidation (M))_		QPM(1)QPTPSM(1)		QPM(47)QPTPSM(47)	0	0	2		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7255347694501	2	524.725535	1047.43652	1.3192	0.00069224	-1.9656	-0.0010314	-0.6464	-0.00033918	524.7245726246712	13.156	0.19216	13.156	13.06	13.252	0	1332	58	0.8172735	0.035096288	0.8172735	331.65625	0	14.242371						329	9	4	NaN	NaN	NaN	0.048656	1	10510	10510		47.482	11.247	1	49447			21367	2150	12342	12698	16931	16931		248;249			-0.08530419193857597
QPMQPTPSM	9	Oxidation (M)	_QPM(Oxidation (M))QPTPSM_		QPM(1)QPTPSM		QPM(47)QPTPSM(-47)	0	0	1		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7280774584001	2	516.728077	1031.4416	1.6845	0.00087045	-1.8786	-0.00097072	-0.19405	-0.00010027	516.727562945417	16.539	0.23975	16.526	16.454	16.693	-0.012995	1332	79	0.8172735	0.048003137	0.81575406	331.72296	0	19.484009						376	11	4	NaN	NaN	NaN	0.048656	1	9619	9619		47.482	26.926	2	37890			21368	2150	12342	12699	16932	16932		248;249			-0.07286115331226029
QPMVDVSIL	9	Unmodified	_QPMVDVSIL_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000062598|Q96JJ3-3|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.5335943576002	1	1001.53359	1000.52632	1.7498	0.0017525	-3.5932	-0.0035987	-1.8434	-0.0018462	1001.529833524714	29.642	0.16895	29.642	29.546	29.715	0	207	73	1.496219	0.042601585	1.496219	303.7777	0	8.649414						221	8	3	NaN	NaN	NaN	0.030669	1	8616	8616		58.235	28.637	1	21613			21369	652	12343	12700	16933	16933					0.02607578477034167
QPMVDVSIL	9	Unmodified	_QPMVDVSIL_					0	0	0		ENSG00000062598|ENST00000290246|ELMO2;nc|ENSG00000062598|Q96JJ3-3|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	ENSG00000062598|ENST00000290246|ELMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5335943576002	1	1001.53359	1000.52632	1.2858	0.0012878	-3.2543	-0.0032593	-1.9685	-0.0019716	1001.5316329630275	29.642	0.14475	29.635	29.586	29.731	-0.0070648	204	82	1.4979934	0.04792428	1.496474	304.13797	0	9.730072						216	7	3	NaN	NaN	NaN	0.04947	1	8449	8449		47.136	21.335	1	19550			21370	652	12343	12700	16934	16934					0.02607578477034167
QPMVRCNGVA	10	Unmodified	_QPMVRCNGVA_					0	0	0			REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7627859430002	2	537.762786	1073.51102	1.2851	0.00069106	-0.57594	-0.00030972	0.70913	0.00038134	537.761771055843	35.771	0.12059	35.771	35.723	35.844	0	1269	49	0.8560222	0.02948612	0.8560222	347.27127	0	11.961914						109	6	2	NaN	NaN	NaN	0.73444	1	11704	11704		5.6942	0.2283	1	9209.8	+		21371	12222	12344	12701	16935	16935					-0.02279611591802677
QPMVRCNGVA	10	Unmodified						0	0	0			REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.762786	1073.51102	1.2851	0.00069106	-0.57594	-0.00030972	0.70913	0.00038134	537.761771055843	35.771	0.12059	35.771	35.723	35.844	0	1269	49	0.8560222	0.02948612	0.8560222	347.27127		11.961914	0.00050888	-0.0013329	-0.00016177	NaN	5.6942	109	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9209.8	+		21372	12222	12344	12701							-0.02279611591802677
QPMVRCNGVA	10	Unmodified						0	0	0			REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	REV__ENST00000448715.2_1_19:35225915-35230226:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.762786	1073.51102	0.88483	0.00047583	2.3669	0.0012728	3.2517	0.0017486	537.7641741151048	35.77	0.12045	35.77	35.722	35.843	0.00053024	1266	58	0.85786515	0.03501284	0.8563457	348.01892		14.20401	-0.00050888	0.0018322	0.00016177	NaN	5.6942	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7353.1	+		21373	12222	12344	12701							-0.02279611591802677
QPNESALLL	9	Unmodified	_QPNESALLL_					0	0	0			REV__nc|ENSG00000151657|O60870-2|KIN	REV__nc|ENSG00000151657|O60870-2|KIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5360371986002	1	984.536037	983.528761	2.4051	0.002368	-1.9939	-0.0019631	0.41126	0.0004049	984.5343882781885	25.829	0.16891	25.829	25.781	25.95	0	249	70	1.4713576	0.040871978	1.4713576	298.80023	0	8.300201						259	8	3	NaN	NaN	NaN	0.032826	1	8011	8011		55.413	0	1	29829	+		21374	10030	12345	12702	16936	16936					0.03633750206347486
QPNGGEPFL	9	Unmodified	_QPNGGEPFL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4628722555	1	958.462872	957.455596	1.8729	0.0017951	-0.96458	-0.00092452	0.90835	0.00087062	958.4624189877877	23.658	0.31322	23.658	23.586	23.899	0	351	112	1.4108255	0.065981746	1.4108255	286.6153	0	13.40448						729	14	4	NaN	NaN	NaN	0.024221	1	7266	7266		66.656	21.492	1	155190			21375	3404	12346	12703	16937	16937					-0.024833785162968525
QPNGGEPFL	9	Unmodified	_QPNGGEPFL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.73507436104995	2	479.735074	957.455596	1.911	0.00091676	-2.4167	-0.0011594	-0.50568	-0.00024259	479.733932186922	23.682	0.1445	23.669	23.621	23.765	-0.013048	1392	82	0.780288	0.049943984	0.77876854	317.03302	0	20.292358						218	7	3	NaN	NaN	NaN	0.089764	1	7128	7128		37.302	3.6041	1	20742			21376	3404	12346	12703	16938	16938					-0.024833785162968525
QPNGGEPFL	9	Unmodified	_QPNGGEPFL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;UCK2|p.Q72Afs*13|1|0.22|ENSG00000143179|chr1:165890316-165890317|-/G|frameshift_variant	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.4628722555	1	958.462872	957.455596	2.1821	0.0020915	-1.3973	-0.0013393	0.78482	0.00075222	958.4620972850305	23.658	0.33741	23.645	23.572	23.91	-0.013048	351	130	1.4108255	0.07665706	1.409306	286.6153	0	15.573212						716	15	4	NaN	NaN	NaN	3.9799E-05	1	7129	7129		126.58	73.821	1	154630			21377	3404	12346	12703	16939	16939					-0.024833785162968525
QPNLFFWI	8	Unmodified	_QPNLFFWI_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5563787101999	1	1064.55638	1063.5491	1.6451	0.0017513	-8.9684	-0.0095474	-7.3233	-0.0077961	1064.5473554081925	38.129	0.12022	38.132	38.084	38.204	0.0034218	87	49	1.5670487	0.028271914	1.5655292	317.90195	0	5.7354126						117	6	2	NaN	NaN	NaN	0.72043	1	11022	11022		17.78	1.3637	1	7644.1	+		21378	9901	12347	12704	16940	16940					0.01986965656783468
QPNSLLIK	8	Unmodified	_QPNSLLIK_					0	0	0			REV__ENSG00000013374|ENST00000568733|NUB1	REV__ENSG00000013374|ENST00000568733|NUB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5512933323002	1	912.551293	911.544017	2.5171	0.002297	1.8504	0.0016886	4.3675	0.0039856	912.555238550189	48.163	0.047974	48.163	48.163	48.211	0	261	31	1.4642475	0.017778873	1.4642475	297.6806	0	3.614441						29	3	2	NaN	NaN	NaN	0.84887	1	6267	6267		0.32989	0	1	1300.8	+		21379	8415	12348	12705	16941	16941					0.08470661794194712
QPPALILLF	9	Unmodified	_QPPALILLF_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.3155032302501	2	506.315503	1010.61645	1.0791	0.00054638	-0.94374	-0.00047783	0.13539	6.8552E-05	506.3150201451914	34.709	0.28922	34.708	34.612	34.901	-0.00064468	1284	61	0.8468043	0.03686565	0.8452849	343.80246	0	14.967438						303	13	2	NaN	NaN	NaN	0.23112	1	8838	8838		23.334	0	1	39296	+		21380	13139	12349	12706	16942	16942					0.11156995867770547
QPPGSGGG	8	Unmodified	_QPPGSGGG_					0	0	0		ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.2998296726001	1	656.29983	655.292553	-0.41642	-0.0002733	1.6553	0.0010864	1.2389	0.0008131	656.3018345583702	56.587	0.095821	56.586	56.562	56.658	-0.00056458	645	40	1.2351195	0.023428798	1.2336	252.55482	0	4.79068						89	5	3	NaN	NaN	NaN	0.84887	1	2087	2087		0.32989	0	1	6551.9			21381	4781	12350	12707	16943	16943					-0.0488813684746674
QPPGSGGG	8	Unmodified						0	0	0		ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	ENSG00000171450|ENST00000302625|CDK5R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	656.29983	655.292553	1.3863	0.00090982	1.2116	0.00079514	2.5978	0.001705	656.3006982038748	56.589	0.047901	56.589	56.565	56.613	0	648	58	1.2333171	0.034256816	1.2333171	252.18626		7.0047607	0.0012363	-0.00011344	-0.00014149	NaN	0.32989	71	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7248.4			21382	4781	12350	12707							-0.0488813684746674
QPPPPPPH	8	Unmodified	_QPPPPPPH_					0	0	0		ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.72959505265	2	433.729595	865.444637	2.0966	0.00090935	7.0096	0.0030403	9.1062	0.0039496	433.734199265261	11.644	0.095955	11.644	11.572	11.668	0	1473	31	0.7302302	0.018567085	0.7302302	297.1404	0	7.5552063						29	5	2	NaN	NaN	NaN	0.84692	1	5608	5608		1.4396	0	1	1700.4			21383	3221	12351	12708	16944	16944					0.006532639000852214
QPPVAHAG	8	Unmodified	_QPPVAHAG_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.4049634461	1	776.404963	775.397687	1.8971	0.0014729	-3.2787	-0.0025456	-1.3816	-0.0010727	776.4027636048955	30.993	0.096565	30.988	30.988	31.084	-0.0050716	612	52	1.2549332	0.030591846	1.2534138	255.79254	0	6.23555						70	5	2	NaN	NaN	NaN	0.84876	1	4359	4359		0.39566	0	1	4280.8			21384	4579	12352	12709	16945	16945					0.0010040434895017825
QPPVAHAG	8	Unmodified						0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	776.404963	775.397687	1.1193	0.00086902	-2.3345	-0.0018125	-1.2152	-0.00094351	776.4031574684976	30.994	0.14486	30.994	30.946	31.091	0	606	40	1.2585332	0.023398757	1.2585332	256.52634		4.7693634	0.0030628	0.00036587	0.0025597	NaN	0.39566	79	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4911.6			21385	4579	12352	12709							0.0010040434895017825
QPPVSPLTLS	10	Unmodified	_QPPVSPLTLS_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.7951319289001	2	519.795132	1037.57571	1.2909	0.00067098	6.1228	0.0031826	7.4137	0.0038536	520.2981098262295	28.194	0.1207	28.185	28.161	28.281	-0.0089779	1257	55	0.86339295	0.033161104	0.8618735	350.41504	0	13.45871						135	6	3	NaN	NaN	NaN	0.76548	1	9903	9903		3.5698	0.78459	1	7150.9			21386	3280	12353	12710	16946	16946					0.05842609757473838
QPQDVDLAL	9	Unmodified	_QPQDVDLAL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5153017565	1	998.515302	997.508025	1.6496	0.0016471	-0.56826	-0.00056742	1.0813	0.0010797	998.5132473330785	24.96	0.19301	24.948	24.9	25.093	-0.012394	252	76	1.4695803	0.044430852	1.4680609	298.3815	0	9.021179						242	9	3	NaN	NaN	NaN	0.017076	1	8299	8299		75.698	38.396	1	30128			21387	5306	12354	12711	16947	16947					0.009171598266561887
QPQKWRGAI	9	Unmodified	_QPQKWRGAI_					0	0	0			REV__chr16:84498111-84500121|156|19.12|0.34|5.83|-|1|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|3	REV__chr16:84498111-84500121|156|19.12|0.34|5.83|-|1|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.3065324927001	2	542.306532	1082.59851	1.55	0.00084057	-3.3569	-0.0018205	-1.8069	-0.0009799	542.3048166571917	20.285	0.14422	20.285	20.237	20.381	0	1245	49	0.87076044	0.029463828	0.87076044	353.21274	0	11.951599						175	7	3	NaN	NaN	NaN	0.56671	1	12106	12106		6.8632	0.94343	1	44283	+		21388	8217	12355	12712	16948	16948					0.06051673665592716
QPQLTEGSHF	10	Unmodified	_QPQLTEGSHF_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.2750949785501	2	572.275095	1142.53564	1.7827	0.0010202	-9.4204	-0.005391	-7.6376	-0.0043708	573.2740715646681	22.621	0.12062	22.621	22.597	22.718	0	1245	115	0.87076044	0.06991613	0.87076044	352.97986	0	28.341888						191	6	4	NaN	NaN	NaN	0.5917	1	14539	14539		15.463	3.9142	1	13660			21389	578	12356	12713	16949	16949					-0.029929369130968553
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.2384546830667	3	426.238455	1275.69353	1.3161	0.00056098	-1.7836	-0.00076024	-0.46749	-0.00019926	426.23775502044373	14.717	0.21612	14.717	14.669	14.885	0	1428	94	0.7580582	0.057480037	0.7580582	460.36252	0	34.907135						307	10	4	NaN	NaN	NaN	0.24745	1	18339	18339		27.507	4.3305	1	78272			21390	335	12357	12714	16950	16950					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.8540437913001	2	638.854044	1275.69353	1.4926	0.00095357	-0.81242	-0.00051902	0.6802	0.00043455	638.8537474011277	14.717	0.12004	14.717	14.669	14.789	0	1089	43	0.96624947	0.025636494	0.96624947	391.20023	0	10.3793335						118	6	3	NaN	NaN	NaN	0.42827	1	18340	18340		32.149	19.58	1	12968			21391	335	12357	12714	16951	16951					0.06671562346150495
QPQQVIHGEKL	11	Unmodified	_QPQQVIHGEKL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.8540437913001	2	638.854044	1275.69353	1.5813	0.0010102	-0.83847	-0.00053566	0.74278	0.00047453	638.8535708713764	14.74	0.12007	14.728	14.704	14.824	-0.011737	1089	37	0.96624947	0.021974206	0.96473	391.20023	0	8.896576						111	6	3	NaN	NaN	NaN	0.74982	1	17523	17523		8.3538	4.3853	1	11255			21392	335	12357	12714	16952	16952					0.06671562346150495
QPQQVIHGEKL	11	Unmodified						0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	426.238455	1275.69353	0.91133	0.00038844	-0.74831	-0.00031896	0.16302	6.9485E-05	426.2382104149726	14.764	0.24011	14.752	14.68	14.92	-0.011738	1428	55	0.7580582	0.033373654	0.75653875	460.36252		20.267548	0.017345	0.00055137	-0.00075972	NaN	27.507	319	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79443			21393	335	12357	12714							0.06671562346150495
QPQSHETAL	9	Unmodified	_QPQSHETAL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.74871305254993	2	505.748713	1009.48287	1.2783	0.00064648	-1.4889	-0.00075301	-0.21063	-0.00010652	505.7479891574981	12.796	0.36027	12.796	12.628	12.988	0	1311	70	0.83019954	0.04245746	0.83019954	337.066	0	17.237946						380	16	2	NaN	NaN	NaN	0.20577	1	8949	8949		24.961	4.5124	1	116890			21394	4883	12358	12715	16953	16953					-0.021488949759145726
QPQSHETAL	9	Unmodified	_QPQSHETAL_					0	0	0		nc|ENSG00000173273|O95271-2|TNKS;ENSG00000173273|ENST00000310430|TNKS	nc|ENSG00000173273|O95271-2|TNKS	nc|ENSG00000173273|O95271-2|TNKS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.74871305254993	2	505.748713	1009.48287	1.1709	0.00059216	-0.5048	-0.0002553	0.66605	0.00033686	505.7485992019302	12.75	0.47981	12.741	12.62	13.1	-0.00947	1311	70	0.83019954	0.042448223	0.8286801	337.066	0	17.234253						518	21	2	NaN	NaN	NaN	0.13602	1	8780	8780		30.61	2.8213	1	150150			21395	4883	12358	12715	16954	16954					-0.021488949759145726
QPRDEAAFL	9	Unmodified	_QPRDEAAFL_					0	0	0		ENST00000411987.5_1_3:12613625-12613697:+|nuORF	ENST00000411987.5_1_3:12613625-12613697:+|nuORF	ENST00000411987.5_1_3:12613625-12613697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7669058057	2	523.766906	1045.51926	1.169	0.00061227	0.038734	2.0288E-05	1.2077	0.00063256	523.7664758525516	20.694	0.14465	20.694	20.646	20.79	0	1281	91	0.84864825	0.05533433	0.84864825	344.39658	0	22.455658						328	7	3	NaN	NaN	NaN	0.59509	1	10445	10445		5.6942	0.50528	1	29591			21396	6868	12359	12716	16955	16955					-0.0016801807919364364
QPRFHTMESLS	11	Unmodified	_QPRFHTMESLS_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.8218863831502	2	666.821886	1331.62922	1.3762	0.00091766	-5.6104	-0.0037412	-4.2343	-0.0028235	666.8170992242631	26.891	0.12067	26.88	26.856	26.976	-0.010643	1113	49	0.9515937	0.029324174	0.95007426	385.09326	0	11.866974						103	6	2	NaN	NaN	NaN	0.63477	1	18421	18421		11.739	4.1513	1	15380	+		21397	10944	12360	12717	16956	16956					-0.023329608023004766
QPRFHTMESLS	11	Unmodified						0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.821886	1331.62922	1.4327	0.00095533	-6.9706	-0.0046481	-5.5379	-0.0036928	666.8170302762513	26.819	0.24181	26.819	26.722	26.964	0	1110	64	0.95342636	0.038490057	0.95342636	385.8349		15.576263	-0.030485	-0.00039972	0.001676	NaN	11.739	241	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35209	+		21398	10944	12360	12717							-0.023329608023004766
QPRFHTMESLS	11	Unmodified						0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	666.821886	1331.62922	1.3762	0.00091766	-5.6104	-0.0037412	-4.2343	-0.0028235	666.8170992242631	26.891	0.12067	26.88	26.856	26.976	-0.010643	1113	49	0.9515937	0.029324174	0.95007426	385.09326		11.866974	0.030485	0.0014142	-0.001676	NaN	11.739	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15380	+		21399	10944	12360	12717							-0.023329608023004766
QPSASDPP	8	Unmodified	_QPSASDPP_					0	0	0		ENST00000269321.11_1_17:79826145-79826631:-|nuORF	ENST00000269321.11_1_17:79826145-79826631:-|nuORF	ENST00000269321.11_1_17:79826145-79826631:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.3628238599	1	798.362824	797.355547	1.7822	0.0014228	2.1867	0.0017458	3.9689	0.0031686	798.3638092188015	28.75	0.096523	28.75	28.725	28.822	0	507	52	1.3178225	0.030490756	1.3178225	268.48254	0	6.2119446						108	5	2	NaN	NaN	NaN	0.83211	1	4718	4718		4.9097	0	1	8492.3			21400	6336	12361	12718	16957	16957					-0.05123615850095575
QPSEKTILI	9	Unmodified	_QPSEKTILI_					0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.8029569610002	2	514.802957	1027.59136	2.2027	0.0011339	-4.9865	-0.0025671	-2.7839	-0.0014332	514.8018551844834	19.108	0.2158	19.108	19.012	19.228	0	1242	118	0.87260187	0.07190746	0.87260187	354.19766	0	29.187958						428	10	4	NaN	NaN	NaN	0.055351	1	9690	9690		44.638	9.342	1	76651	+		21401	8407	12362	12719	16958	16958					0.07866896274549617
QPSEKTILI	9	Unmodified						0	0	0			REV__ENSG00000011454|ENST00000373647|RABGAP1	REV__ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.802957	1027.59136	2.2027	0.0011339	-4.9865	-0.0025671	-2.7839	-0.0014332	514.8018551844834	19.108	0.2158	19.108	19.012	19.228	0	1242	118	0.87260187	0.07190746	0.87260187	354.19766		29.187958	-0.015832	-0.0026748	0.0016804	NaN	44.638	428	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76651	+		21402	8407	12362	12719							0.07866896274549617
QPSPLEPVI	9	Unmodified	_QPSPLEPVI_					0	0	0		nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-5|OSBPL9	nc|ENSG00000117859|Q96SU4-5|OSBPL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.5458736034001	1	979.545874	978.538597	1.9827	0.0019422	-1.2291	-0.001204	0.75364	0.00073823	979.5449796605008	26.505	0.12064	26.505	26.456	26.577	0	297	58	1.4428991	0.03381765	1.4428991	293.0416	0	6.868103						127	6	2	NaN	NaN	NaN	0.032826	1	7847	7847		55.413	24.622	1	15289			21403	2158	12363	12720	16959	16959					0.04846938211710494
QPSSSPMP	8	Unmodified	_QPSSSPMP_					0	0	0			REV__ENST00000302926.6_1_17:7322895-7323171:+|nuORF	REV__ENST00000302926.6_1_17:7322895-7323171:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	830.3712800562001	1	830.37128	829.364004	1.1271	0.00093591	-1.1086	-0.00092057	0.018469	1.5336E-05	830.3717553493377	27.663	0.12064	27.653	27.629	27.75	-0.009552	447	55	1.3536539	0.03221035	1.3521345	275.6023	0	6.558014						129	6	2	NaN	NaN	NaN	0.82797	1	5013	5013		5.4659	0	1	9566.8	+		21404	11664	12364	12721	16960	16960					-0.05750385205112707
QPTFTEHLL	9	Unmodified	_QPTFTEHLL_					0	0	0		nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.28493138335	2	543.284931	1084.55531	2.047	0.0011121	4.691	0.0025485	6.7379	0.0036606	543.7896323781782	23.055	0.21672	23.055	22.983	23.2	0	1221	94	0.885486	0.057070732	0.885486	359.1778	0	23.149475						431	10	3	NaN	NaN	NaN	0.31737	1	12174	12174		17.799	1.2148	1	64856			21405	8010	12365	12722	16961	16961					0.0164143909764789
QPTFTEHLL	9	Unmodified	_QPTFTEHLL_					0	0	0		nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT;nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	nc|ENSG00000197568|Q9XRX5-3|ANKRD13C-DT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.28493138335	2	543.284931	1084.55531	1.709	0.00092846	4.3924	0.0023863	6.1014	0.0033148	543.288026836825	23.103	0.14459	23.09	23.041	23.186	-0.013294	1242	97	0.87260187	0.05891496	0.8710824	353.95163	0	23.897522						412	7	4	NaN	NaN	NaN	0.12945	1	11858	11858		31.561	6.6	1	62130			21406	8010	12365	12722	16962	16962					0.0164143909764789
QPTGEEPAL	9	Unmodified	_QPTGEEPAL_					0	0	0		ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.4574525265999	1	941.457453	940.450176	2.2329	0.0021022	-0.47949	-0.00045142	1.7535	0.0016508	941.4574728113474	18.604	0.26381	18.604	18.508	18.772	0	384	76	1.3911947	0.044658184	1.3911947	282.6997	0	9.074829						434	12	3	NaN	NaN	NaN	0.01452	1	6826	6826		79.199	29.238	1	47362			21407	2011	12366	12723	16963	16963					-0.022431020987710326
QPTGEEPAL	9	Unmodified	_QPTGEEPAL_					0	0	0		ENST00000480844.2_1_2:74732736-74734502:-|nuORF;nc|ENSG00000115289|Q9BSM1-3|PCGF1;ENST00000475863.5_1_2:74732272-74734286:-|nuORF;ENSG00000115289|ENST00000233630|PCGF1	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	ENST00000480844.2_1_2:74732736-74734502:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4574525265999	1	941.457453	940.450176	2.1793	0.0020517	-1.1413	-0.0010745	1.038	0.00097726	941.4570348545489	18.602	0.23994	18.588	18.516	18.756	-0.014059	381	70	1.3929803	0.04107678	1.3914609	283.06253	0	8.347076						384	11	3	NaN	NaN	NaN	0.0084155	1	6687	6687		95.62	63.167	1	44410			21408	2011	12366	12723	16964	16964					-0.022431020987710326
QPTGENEM	8	Unmodified	_QPTGENEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	905.3669229598	1	905.366923	904.359646	2.4384	0.0022076	-0.92663	-0.00083894	1.5117	0.0013687	905.3653799666375	13.781	0.12011	13.781	13.709	13.829	0	453	40	1.3500742	0.0232718	1.3500742	274.50168	0	4.7316895						107	6	2	NaN	NaN	NaN	0.021212	1	6156	6156		91.563	44.427	1	9436			21409	6161	12367	12724	16965	16965					-0.09635894418681801
QPTGENEM	8	Unmodified	_QPTGENEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.3669229598	1	905.366923	904.359646	2.4233	0.002194	-0.8881	-0.00080406	1.5352	0.0013899	905.3660212070017	13.733	0.071959	13.723	13.651	13.723	-0.010672	453	43	1.3500742	0.025060654	1.3485547	274.50168	0	5.095398						54	4	2	NaN	NaN	NaN	0.43738	1	6032	6032		34.439	6.65	1	3827.7			21410	6161	12367	12724	16966	16966					-0.09635894418681801
QPTGENEM	8	Unmodified	_QPTGENEM_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.3669229598	1	905.366923	904.359646	2.1887	0.0019816	-0.6411	-0.00058043	1.5476	0.0014012	905.3657067994711	13.781	0.071895	13.77	13.77	13.842	-0.010672	450	40	1.3518641	0.023269296	1.3503447	274.86563	0	4.7311707						73	4	2	NaN	NaN	NaN	0.10172	1	6033	6033		63.958	40.624	1	5704.1			21411	6161	12367	12724	16967	16967					-0.09635894418681801
QPTGENEM	8	Unmodified						0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	905.366923	904.359646	2.3557	0.0021328	-1.1496	-0.0010408	1.2061	0.001092	905.3654409761822	13.901	0.095999	13.901	13.877	13.973	0	450	40	1.3518641	0.023269296	1.3518641	274.86563		4.7311707	0.065257	-0.00029174	0.00075972	NaN	63.958	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610.1			21412	6161	12367	12724							-0.09635894418681801
QPTIERVAL	9	Unmodified	_QPTIERVAL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.80074862305	2	513.800749	1025.58694	1.7428	0.00089547	-1.4003	-0.00071945	0.34258	0.00017602	513.800411343898	20.381	0.096115	20.381	20.357	20.453	0	1290	52	0.84311575	0.031357765	0.84311575	342.2378	0	12.72876						107	5	3	NaN	NaN	NaN	0.33202	1	9608	9608		16.858	5.3099	1	16407			21413	4259	12368	12725	16968	16968					0.07517431851601941
QPTIERVAL	9	Unmodified						0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.800749	1025.58694	1.1551	0.00059348	-0.81871	-0.00042066	0.33636	0.00017282	513.8008216208373	20.405	0.14452	20.391	20.343	20.487	-0.014141	1296	67	0.8394264	0.040574074	0.83790696	340.7402		16.469849	0.0049645	0.00033489	-0.0026044	NaN	16.858	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17296			21414	4259	12368	12725							0.07517431851601941
QPTLDIDE	8	Unmodified	_QPTLDIDE_					0	0	0			REV__nc|ENSG00000197408|P20813-2|CYP2B6	REV__nc|ENSG00000197408|P20813-2|CYP2B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4414681113999	1	930.441468	929.434192	1.7379	0.001617	-3.3272	-0.0030957	-1.5893	-0.0014787	930.4384413622067	32.297	0.24131	32.297	32.201	32.442	0	330	154	1.4233059	0.09089947	1.4233059	289.27435	0	18.474518						767	11	3	NaN	NaN	NaN	0.43738	1	6580	6580		34.439	0.74048	1	104620	+		21415	11145	12369	12726	16969	16969					-0.03334808335671369
QPTSAGGG	8	Unmodified	_QPTSAGGG_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|22|2|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|22|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.3103943589001	1	674.310394	673.303118	-0.5785	-0.00039009	4.246	0.0028632	3.6676	0.0024731	674.3141346533463	56.563	0.095821	56.562	56.562	56.658	-0.00056458	630	64	1.2441287	0.03783846	1.2426093	254.25787	0	7.73291						99	5	2	NaN	NaN	NaN	0.84876	1	2587	2587		0.39566	0	1	7276.8	+		21416	13012	12370	12727	16970	16970					-0.04660154193038579
QPVDDAAEV	9	Unmodified	_QPVDDAAEV_					0	0	0		ENST00000549307.5_1_12:58109828-58113249:+|nuORF;ENSG00000135506|ENST00000315970|OS9;TSFM-OS9|8|fusion;TSFM-OS9|2|fusion;TSFM-OS9|4|fusion;TSFM-OS9|7|fusion;TSFM-OS9|5|fusion;TSFM-OS9|3|fusion;TSFM-OS9|1|fusion;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-4|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;TSFM-OS9|6|fusion	ENST00000549307.5_1_12:58109828-58113249:+|nuORF	ENST00000549307.5_1_12:58109828-58113249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4367170845	1	943.436717	942.429441	1.8278	0.0017244	-0.12758	-0.00012036	1.7003	0.0016041	943.4362557317762	17.429	0.095959	17.429	17.405	17.501	0	381	49	1.3929803	0.028570533	1.3929803	283.05396	0	5.805542						107	5	2	NaN	NaN	NaN	0.042816	1	6864	6864		49.961	25.399	1	9092.7			21417	2948	12371	12728	16971	16971					-0.0440769247843491
QPVGGDPEV	9	Unmodified	_QPVGGDPEV_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.4312377761	1	897.431238	896.423961	1.7106	0.0015351	-0.077749	-6.9774E-05	1.6328	0.0014654	897.431389722179	16.994	0.16795	16.981	16.933	17.101	-0.013294	462	52	1.3447032	0.03043878	1.3431838	273.44592	0	6.189728						165	8	2	NaN	NaN	NaN	0.032826	1	5893	5893		55.413	29.298	1	19322			21418	4068	12372	12729	16972	16972					-0.02839371270238189
QPVHGDLDL	9	Unmodified	_QPVHGDLDL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.25363125495	2	497.253631	992.49271	1.6496	0.00082025	6.2898	0.0031276	7.9394	0.0039479	497.2572113178585	18.41	0.14411	18.396	18.348	18.492	-0.013948	1311	73	0.83019954	0.044315398	0.8286801	337.14355	0	17.99646						125	7	2	NaN	NaN	NaN	0.13602	1	8147	8147		30.61	0	1	23627			21419	2542	12373	12730	16973	16973					-0.003837069705241447
QPVHPDVTM	9	Unmodified	_QPVHPDVTM_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.250034321	2	512.250034	1022.48552	1.4662	0.00075108	-0.80972	-0.00041478	0.65651	0.0003363	512.2498470607671	17.066	0.21599	17.053	16.957	17.173	-0.013294	1308	73	0.83204526	0.044320166	0.8305259	337.75763	0	17.99118						254	10	4	NaN	NaN	NaN	0.030669	1	9265	9265		58.235	25.783	1	37140			21420	2728	12374	12731	16974	16974					-0.024827628425896364
QPVHPDVTM	9	Unmodified						0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.250034	1022.48552	2.1256	0.0010888	-1.6915	-0.00086646	0.43414	0.00022239	512.2492641666279	17.045	0.14409	17.045	17.021	17.165	0	1305	55	0.83389086	0.03322929	0.83389086	338.50684		13.489014	-0.0036474	-0.00037996	0.0016825	NaN	58.235	201	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35543			21421	2728	12374	12731							-0.024827628425896364
QPVHPDVTM	9	Oxidation (M)	_QPVHPDVTM(Oxidation (M))_		QPVHPDVTM(1)		QPVHPDVTM(73)	0	0	1		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2474916320501	2	520.247492	1038.48043	1.3583	0.00070666	-2.411	-0.0012543	-1.0526	-0.00054764	520.2464928651688	13.829	0.14378	13.818	13.77	13.914	-0.010673	1305	64	0.83389086	0.038769722	0.8323714	338.43756	0	15.734802						158	7	2	NaN	NaN	NaN	0.019103	1	9918	9918		73.133	41.572	1	48242			21422	2728	12374	12732	16975	16975		316			-0.03727066705209836
QPVKQVAFTQ	10	Unmodified	_QPVKQVAFTQ_					0	0	0		ENST00000330342.7_1_12:124233270-124235768:+|nuORF	ENST00000330342.7_1_12:124233270-124235768:+|nuORF	ENST00000330342.7_1_12:124233270-124235768:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.54862916683334	3	382.548629	1144.62406	2.4739	0.00094638	-1.7827	-0.00068198	0.69115	0.0002644	382.54720863188453	20.574	0.024094	20.559	20.535	20.559	-0.014086	1479	31	0.72651637	0.018569112	0.7249969	441.74722	0	11.290649						31	2	2	NaN	NaN	NaN	0.77024	1	14138	14138		1.2289	0.34431	1	2103.5			21423	6503	12375	12733	16976	16976					0.05753103397364612
QPVSSSYYYCC	11	Unmodified	_QPVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.2546563496502	2	650.254656	1298.49476	1.5801	0.0010275	-1.1177	-0.00072681	0.46234	0.00030064	650.7561765952975	19.3	0.16797	19.3	19.276	19.444	0	1161	46	0.9222442	0.027537405	0.9222442	373.3138	0	11.146851						171	8	4	NaN	NaN	NaN	0.69801	1	18746	18746		7.5876	0	1	17882			21424	7017	12376	12734	16977	16977					-0.1425478233920785
QPVSSSYYYCC	11	Unmodified	_QPVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.2546563496502	2	650.254656	1298.49476	1.3236	0.00086065	-0.49903	-0.0003245	0.82453	0.00053615	650.2540079033881	19.346	0.19233	19.332	19.308	19.5	-0.014141	1161	40	0.9222442	0.02386576	0.92072475	373.3138	0	9.6605835						170	9	3	NaN	NaN	NaN	0.66717	1	17911	17911		9.6116	4.4228	1	17782			21425	7017	12376	12734	16978	16978					-0.1425478233920785
QPVVEDVSL	9	Unmodified	_QPVVEDVSL_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5200527834	1	985.520053	984.512776	1.6538	0.0016299	-3.0133	-0.0029697	-1.3595	-0.0013398	985.5167546171308	24.478	0.096405	24.478	24.454	24.55	0	276	61	1.4553556	0.035573006	1.4553556	295.5465	0	7.223999						169	5	3	NaN	NaN	NaN	0.0073225	1	8031	8031		97.85	56.065	1	22422			21426	1745	12377	12735	16979	16979					0.01990043969431099
QPVVEDVSL	9	Unmodified	_QPVVEDVSL_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5200527834	1	985.520053	984.512776	1.5874	0.0015644	-2.6074	-0.0025697	-1.0201	-0.0010053	985.517653876111	24.478	0.12064	24.465	24.441	24.561	-0.012747	276	55	1.4553556	0.03201568	1.4538362	295.5465	0	6.5016174						169	6	3	NaN	NaN	NaN	0.012495	1	7858	7858		85.344	52.892	1	18799			21427	1745	12377	12735	16980	16980					0.01990043969431099
QPWLDHDITWW	11	Unmodified	_QPWLDHDITWW_					0	0	0		ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.85150110235	2	748.851501	1495.68845	1.8046	0.0013514	-10.428	-0.0078093	-8.6237	-0.0064579	748.8433223333676	23.971	0.12064	23.958	23.934	24.054	-0.01305	957	40	1.0466307	0.023696661	1.0451113	423.0756	0	9.578827						123	6	3	NaN	NaN	NaN	0.66717	1	19555	19555		9.6116	1.3341	1	9845.6			21428	7738	12378	12736	16981	16981					-0.039567415165038256
QPWNGQYSL	9	Unmodified	_QPWNGQYSL_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.5108850806	1	1092.51089	1091.50361	1.6408	0.0017926	0.26492	0.00028943	1.9057	0.002082	1092.5098600787042	24.164	0.19302	24.151	24.127	24.32	-0.012749	141	52	1.5352125	0.03010106	1.5336931	311.34122	0	6.104492						96	9	2	NaN	NaN	NaN	0.21451	1	12137	12137		24.4	11.397	1	6697.1			21429	2245	12379	12737	16982	16982					-0.03848304596226626
QPWNGQYSL	9	Unmodified						0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1092.51089	1091.50361	1.9267	0.002105	-0.44819	-0.00048965	1.4785	0.0016153	1092.5092554242274	24.164	0.072433	24.164	24.14	24.213	0	141	43	1.5352125	0.024787784	1.5352125	311.34122		5.026947	0.0064941	-0.0003961	0.00075972	NaN	24.4	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5020.9			21430	2245	12379	12737							-0.03848304596226626
QPYGGFLDIL	10	Unmodified	_QPYGGFLDIL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7951319289001	2	561.795132	1121.57571	0.96512	0.0005422	-3.8003	-0.002135	-2.8351	-0.0015928	561.792973320729	35.072	0.21719	35.072	35.023	35.241	0	1260	58	0.8615505	0.035001516	0.8615505	349.32422	0	14.191711						272	10	3	NaN	NaN	NaN	0.12649	1	13743	13743		42.318	2.1638	1	51944			21431	5133	12380	12738	16983	16983					0.019786097574751693
QPYGGFLDIL	10	Unmodified	_QPYGGFLDIL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5829873912	1	1122.58299	1121.57571	1.293	0.0014515	0.12283	0.00013789	1.4159	0.0015894	1122.5836571774287	35.072	0.16894	35.072	35.023	35.192	0	63	70	1.5811787	0.040617228	1.5811787	320.55576	0	8.2344055						262	8	3	NaN	NaN	NaN	0.004521	1	13751	13751		78.289	8.5073	1	28561			21432	5133	12380	12738	16984	16984					0.019786097574751693
QPYGGFLDIL	10	Unmodified	_QPYGGFLDIL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.5829873912	1	1122.58299	1121.57571	1.1126	0.0012489	0.45636	0.0005123	1.5689	0.0017612	1122.5844431032522	35.07	0.14478	35.07	35.022	35.167	-4.5776E-05	60	73	1.582944	0.04238093	1.5814246	320.91367	0	8.59198						269	7	3	NaN	NaN	NaN	0.033293	1	13345	13345		58.2	13.561	1	32593			21433	5133	12380	12738	16985	16985					0.019786097574751693
QQALFFNFL	9	Unmodified	_QQALFFNFL_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.29784179335	2	564.297842	1126.58113	0.94269	0.00053196	-2.0857	-0.001177	-1.143	-0.00064502	564.2953423301375	34.009	0.096577	34.008	33.984	34.08	-0.0012474	1221	46	0.885486	0.02759695	0.88396657	359.0097	0	11.188873						119	5	3	NaN	NaN	NaN	0.47587	1	13523	13523		10.605	0.5534	1	12375			21434	1482	12381	12739	16986	16986					0.02290333339942663
QQALFFNFL	9	Unmodified						0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.297842	1126.58113	1.1916	0.00067242	-4.1774	-0.0023573	-2.9858	-0.0016849	564.2959111826283	34.01	0.12073	34.01	33.986	34.107	0	1224	46	0.883646	0.02759999	0.883646	358.2637		11.190063	0.001237	-0.00092329	-0.00016028	NaN	10.605	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13923			21435	1482	12381	12739							0.02290333339942663
QQALIAAA	8	Unmodified	_QQALIAAA_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF;nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.22942787714993	2	393.229428	784.444303	1.3211	0.00051951	-5.8365	-0.0022951	-4.5153	-0.0017756	393.2267180649361	37.142	0.09639	37.145	37.096	37.193	0.0022507	1326	31	0.8209676	0.018468738	0.81944823	334.60052	0	7.5272827						60	5	2	NaN	NaN	NaN	0.84876	1	4470	4470		0.39566	0	1	5176.4			21436	4755	12382	12740	16987	16987					0.04345844180215863
QQEPSLDDFER	11	Unmodified	_QQEPSLDDFER_					0	0	0			REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__nc|ENSG00000074370|Q93084-4|ATP2A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.30986304265	2	682.309863	1362.60517	1.947	0.0013285	4.3758	0.0029857	6.3229	0.0043142	682.3132412359454	16.371	0.33563	16.358	16.262	16.598	-0.012995	1116	40	0.94976085	0.023829699	0.9482414	384.26175	0	9.641235						288	15	3	NaN	NaN	NaN	0.6011	1	18802	18802		13.949	2.2099	1	35051	+		21437	8605	12383	12741	16988	16988					-0.061625227549939154
QQEPSLDDFER	11	Unmodified						0	0	0			REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__nc|ENSG00000074370|Q93084-4|ATP2A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	682.309863	1362.60517	1.947	0.0013285	4.3758	0.0029857	6.3229	0.0043142	682.3132412359454	16.371	0.33563	16.358	16.262	16.598	-0.012995	1116	40	0.94976085	0.023829699	0.9482414	384.26175		9.641235	0.075991	-0.0012856	-0.00075972	NaN	13.949	288	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35051	+		21438	8605	12383	12741							-0.061625227549939154
QQGHSFFLLAG	11	Unmodified	_QQGHSFFLLAG_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.8091049714001	2	602.809105	1203.60366	0.8658	0.00052191	-6.6246	-0.0039934	-5.7588	-0.0034714	603.305744176961	31.139	0.55504	31.139	30.849	31.404	0	1182	79	0.9093879	0.04774952	0.9093879	368.4151	0	19.344513						734	24	3	NaN	NaN	NaN	0.57257	1	16579	16579		15.822	0.35925	1	153890	+		21439	11336	12384	12742	16989	16989					0.009999327375680878
QQGPALPG	8	Unmodified	_QQGPALPG_					0	0	0			REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4046290951001	1	767.404629	766.397353	1.6666	0.001279	-5.4111	-0.0041525	-3.7445	-0.0028735	767.4003090989899	32.827	0.096485	32.824	32.776	32.872	-0.0031052	510	37	1.316029	0.021521688	1.3145095	268.3004	0	4.387665						78	5	2	NaN	NaN	NaN	0.8439	1	4233	4233		3.1533	0	1	4818.4	+		21440	9009	12385	12743	16990	16990					0.004809846290982023
QQGPALPG	8	Unmodified						0	0	0			REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.404629	766.397353	1.3362	0.0010254	-3.6067	-0.0027678	-2.2705	-0.0017424	767.4017126540062	32.828	0.096489	32.828	32.78	32.876	0	510	40	1.316029	0.023316503	1.316029	268.3004		4.7535706	0.0020733	0.0007455	0.00075972	NaN	3.1533	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4561.3	+		21441	9009	12385	12743							0.004809846290982023
QQGPALPG	8	Unmodified						0	0	0			REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	REV__nc|ENSG00000107263|Q13905-2|RAPGEF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.404629	766.397353	1.6666	0.001279	-5.4111	-0.0041525	-3.7445	-0.0028735	767.4003090989899	32.827	0.096485	32.824	32.776	32.872	-0.0031052	510	37	1.316029	0.021521688	1.3145095	268.3004		4.387665	-0.0020733	-0.0006392	-0.00075972	NaN	3.1533	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4818.4	+		21442	9009	12385	12743							0.004809846290982023
QQGRRDDYKM	10	Unmodified	_QQGRRDDYKM_					0	0	0		ENST00000388712.7_2_9:88642665-88642725:-|nuORF	ENST00000388712.7_2_9:88642665-88642725:-|nuORF	ENST00000388712.7_2_9:88642665-88642725:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8093103241499	2	648.80931	1295.60407	1.6881	0.0010952	0.16505	0.00010709	1.8531	0.0012023	648.8082282161514	33.913	0.04821	33.911	33.863	33.911	-0.0012474	1002	25	1.0192708	0.014603853	1.0177513	412.59875	0	5.91156						47	3	2	NaN	NaN	NaN	0.5917	1	17859	17859		15.463	6.5007	1	2887.6			21443	6745	12386	12744	16991	16991					-0.03191015604920722
QQHAAAAA	8	Unmodified	_QQHAAAAA_					0	0	0		ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000156030|ENST00000423556|MIDEAS	REV__ENSG00000156030|ENST00000423556|MIDEAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3794769770999	1	767.379477	766.372201	0.42226	0.00032403	7.3552	0.0056442	7.7774	0.0059682	767.3863555169087	46.484	0.07201	46.494	46.494	46.566	0.0098152	546	40	1.294491	0.023348808	1.2929716	263.90958	0	4.7601624						63	4	2	NaN	NaN	NaN	0.84651	1	4230	4230		1.6704	0.42852	1	5153.5			21444	4724	12387	12745	16992	16992					-0.020330701734906143
QQHLRNVEERR	11	Unmodified	_QQHLRNVEERR_					0	0	0			REV__ENSG00000179256|ENST00000316048|SMCO3	REV__ENSG00000179256|ENST00000316048|SMCO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.8925545625999	2	732.892555	1463.77056	1.9989	0.001465	2.2797	0.0016708	4.2786	0.0031358	733.3942227101002	25.901	0.072395	25.901	25.853	25.926	0	1017	31	1.010141	0.01826644	1.010141	408.40704	0	7.3852844						54	4	2	NaN	NaN	NaN	0.75376	1	20451	20451		3.9281	0.7165	1	3593.9	+		21445	10804	12388	12746	16993	16993					0.05722173615140491
QQISENPQL	9	Unmodified	_QQISENPQL_					0	0	0		ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7696454599001	2	528.769645	1055.52474	0.79961	0.00042281	-9.6468	-0.0051009	-8.8472	-0.0046781	528.7651551587119	20.598	0.16875	20.584	20.559	20.728	-0.014088	1275	97	0.85233563	0.05899781	0.8508162	345.8504	0	23.939392						339	8	2	NaN	NaN	NaN	0.33202	1	10652	10652		16.858	2.9095	1	37464			21446	4080	12389	12747	16994	16994					-0.0008033928738768736
QQISENPQL	9	Unmodified						0	0	0		ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.769645	1055.52474	1.3317	0.00070414	-10.393	-0.0054952	-9.0609	-0.0047911	528.7646451539449	20.646	0.1687	20.646	20.622	20.79	0	1308	85	0.83204526	0.051639795	0.83204526	337.61722		20.953766	0.030995	-0.0003401	-0.0093855	NaN	16.858	242	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24330			21447	4080	12389	12747							-0.0008033928738768736
QQKDNEPFI	9	Unmodified	_QQKDNEPFI_					0	0	0			REV__ENSG00000165490|ENST00000533655|DDIAS	REV__ENSG00000165490|ENST00000533655|DDIAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.777470492	2	559.77747	1117.54039	0.91001	0.0005094	-7.9662	-0.0044593	-7.0562	-0.0039499	559.7730384892152	33.382	0.096504	33.38	33.332	33.428	-0.0018501	1239	49	0.87444305	0.02945745	0.8729236	354.56717	0	11.944336						78	5	2	NaN	NaN	NaN	0.58159	1	13180	13180		6.2502	0.15988	1	7203.3	+		21448	10383	12390	12748	16995	16995					-0.013680527703400003
QQLLIALF	8	Unmodified	_QQLLIALF_					0	0	0			REV__ENSG00000140505|ENST00000343932|CYP1A2	REV__ENSG00000140505|ENST00000343932|CYP1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.5767798013001	1	945.57678	944.569503	1.5866	0.0015003	-0.13491	-0.00012756	1.4517	0.0013727	945.577125045745	36.204	0.12053	36.205	36.157	36.277	0.0011024	228	73	1.4837929	0.042619705	1.4822735	301.49725	0	8.660065						156	6	3	NaN	NaN	NaN	0.19946	1	6801	6801		50.033	13.996	1	13989	+		21449	9801	12391	12749	16996	16996					0.09500136316603403
QQLLIALF	8	Unmodified						0	0	0			REV__ENSG00000140505|ENST00000343932|CYP1A2	REV__ENSG00000140505|ENST00000343932|CYP1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	945.57678	944.569503	1.5866	0.0015003	-0.13491	-0.00012756	1.4517	0.0013727	945.577125045745	36.204	0.12053	36.205	36.157	36.277	0.0011024	228	73	1.4837929	0.042619705	1.4822735	301.49725		8.660065	-0.00030139	-0.00057757	-0.00075972	NaN	50.033	156	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13989	+		21450	9801	12391	12749							0.09500136316603403
QQLYPSLL	8	Unmodified	_QQLYPSLL_					0	0	0		nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	nc|ENSG00000010017|Q96S59-2|RANBP9	nc|ENSG00000010017|Q96S59-2|RANBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.2712926918501	2	481.271293	960.528032	2.5041	0.0012051	-3.3603	-0.0016172	-0.8562	-0.00041206	481.2693578385368	23.585	0.096478	23.572	23.548	23.645	-0.013048	1344	37	0.8098828	0.022179246	0.8083634	329.04257	0	9.011078						81	5	3	NaN	NaN	NaN	0.6053	1	7206	7206		24.961	0	1	6941.3			21451	387	12392	12750	16997	16997					0.046189555572937024
QQLYRMRR	8	Unmodified	_QQLYRMRR_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.21358643936674	3	384.213586	1149.61893	1.7195	0.00066064	-1.5902	-0.00061098	0.12924	4.9654E-05	384.2127318636478	22.79	0.096451	22.79	22.742	22.838	0	1473	70	0.7302302	0.04270202	0.7302302	443.98242	0	25.962952						189	5	3	NaN	NaN	NaN	0.84455	1	14798	14798		1.7022	0.52538	1	28806	+		21452	11073	12393	12751	16998	16998					0.05010521053782213
QQPQWRAIGA	10	Unmodified	_QQPQWRAIGA_					0	0	0			REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.80689663345	2	577.806897	1153.59924	1.0425	0.00060235	-7.6996	-0.0044489	-6.6571	-0.0038465	577.8017099147016	27.59	0.048283	27.581	27.533	27.581	-0.009552	1218	58	0.8873258	0.034944832	0.8858064	359.65378	0	14.16394						86	3	2	NaN	NaN	NaN	0.76548	1	14441	14441		3.5698	0	1	16191	+		21453	12830	12394	12752	16999	16999					0.0285846831463914
QQPQWRAIGA	10	Unmodified						0	0	0			REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.806897	1153.59924	1.6303	0.00094199	-12.105	-0.0069946	-10.475	-0.0060526	577.8001116190129	27.688	0.096527	27.688	27.664	27.76	0	1203	70	0.8965218	0.042292476	0.8965218	363.38116		17.14212	0.053428	-0.0023077	0.0053577	NaN	3.5698	138	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20487	+		21454	12830	12394	12752							0.0285846831463914
QQPQWRAIGA	10	Unmodified						0	0	0			REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	REV__ENST00000572453.1_1_17:6920562-6920778:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.806897	1153.59924	1.0425	0.00060235	-7.6996	-0.0044489	-6.6571	-0.0038465	577.8017099147016	27.59	0.048283	27.581	27.533	27.581	-0.009552	1218	58	0.8873258	0.034944832	0.8858064	359.65378		14.16394	-0.053428	0.0027837	-0.0053577	NaN	3.5698	86	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16191	+		21455	12830	12394	12752							0.0285846831463914
QQQMIEQLSQL	11	Unmodified	_QQQMIEQLSQL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3426516150001	2	673.342652	1344.67075	0.79652	0.00053633	2.1756	0.0014649	2.9722	0.0020013	673.846032743328	30.752	0.16888	30.746	30.625	30.794	-0.0057545	1083	49	0.9699114	0.029289424	0.96839195	392.46698	0	11.851715						182	8	2	NaN	NaN	NaN	0.2084	1	18615	18615		29.547	9.9547	1	35888			21456	1451	12395	12753	17000	17000					0.01220175166372428
QQQMIEQLSQL	11	Unmodified						0	0	0		ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	673.342652	1344.67075	1.0751	0.0007239	1.1367	0.00076538	2.2118	0.0014893	673.3433739102902	30.632	0.28963	30.632	30.511	30.801	0	1086	64	0.9680805	0.038452744	0.9680805	391.72614		15.55957	-0.056929	-0.00051252	-0.00015572	NaN	29.547	449	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56637			21457	1451	12395	12753							0.01220175166372428
QQQQQLSI	8	Unmodified	_QQQQQLSI_					0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.75908077360003	2	486.759081	971.503609	1.9543	0.00095127	-11.396	-0.005547	-9.4415	-0.0045957	486.75330320557174	21.392	0.04808	21.378	21.354	21.402	-0.014006	1326	34	0.8209676	0.02031672	0.81944823	333.49304	0	8.253021						46	3	2	NaN	NaN	NaN	0.77489	1	7505	7505		12.588	0	1	4426	+		21458	8503	12396	12754	17001	17001					0.016716954037633514
QQQQQLSI	8	Unmodified						0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.759081	971.503609	1.7392	0.00084657	-11.969	-0.0058262	-10.23	-0.0049797	486.7530187276383	21.392	0.048056	21.392	21.368	21.416	0	1323	37	0.8228144	0.022160053	0.8228144	334.24323		9.001862	0.0069505	-0.00025823	0.0016831	NaN	12.588	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4179.5	+		21459	8503	12396	12754							0.016716954037633514
QQQQQLSI	8	Unmodified						0	0	0			REV__nc|ENSG00000054654|Q8WXH0|SYNE2	REV__nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.759081	971.503609	1.9543	0.00095127	-11.396	-0.005547	-9.4415	-0.0045957	486.75330320557174	21.392	0.04808	21.378	21.354	21.402	-0.014006	1326	34	0.8209676	0.02031672	0.81944823	333.49304		8.253021	-0.0069505	0.00030027	-0.0016831	NaN	12.588	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4426	+		21460	8503	12396	12754							0.016716954037633514
QQQQQQQQN	9	Unmodified	_QQQQQQQQN_					0	0	0		nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.5146472081667	3	386.514647	1156.52211	1.1821	0.0004569	7.1003	0.0027444	8.2824	0.0032013	386.5163757273007	36.35	0.096428	36.35	36.326	36.422	0	1491	40	0.7190863	0.024151623	0.7190863	437.176	0	14.683228						140	5	4	NaN	NaN	NaN	0.58159	1	15031	15031		3.5794	0	1	10850			21461	1296;8898	12397	12755	17002	17002					-0.04988794692326337
QQQQQQQQN	9	Unmodified						0	0	0		nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ENST00000468376.2_1_20:45867286-45947776:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	386.514647	1156.52211	1.8267	0.00070604	3.8088	0.0014721	5.6354	0.0021782	386.5162649021134	36.372	0.072258	36.374	36.35	36.422	0.0016747	1491	31	0.7190863	0.018577218	0.71756685	437.176		11.294189	0.011981	-0.0011073	-0.00075972	NaN	3.5794	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6406.6			21462	1296;8898	12397	12755							-0.04988794692326337
QQQYWQRVSQL	11	Unmodified	_QQQYWQRVSQL_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.37313200145	2	732.373132	1462.73171	1.1885	0.00087046	1.5374	0.0011259	2.7259	0.0019964	732.3738277709328	29.521	0.16891	29.514	29.442	29.61	-0.0070648	1023	52	1.0064877	0.031051338	1.0049683	406.9327	0	12.554382						168	8	3	NaN	NaN	NaN	0.47586	1	19457	19457		19.336	2.4781	1	13061	+		21463	8724	12398	12756	17003	17003					0.01885448260782141
QQQYWQRVSQL	11	Unmodified						0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	732.373132	1462.73171	1.1913	0.0008725	1.4687	0.0010756	2.66	0.0019481	732.3742224108122	29.425	0.16896	29.425	29.377	29.546	0	1026	61	1.0046607	0.036529005	1.0046607	406.19406		14.769043	-0.044346	-5.8576E-05	-0.00015375	NaN	19.336	206	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20103	+		21464	8724	12398	12756							0.01885448260782141
QQQYWQRVSQL	11	Unmodified						0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	732.373132	1462.73171	1.1885	0.00087046	1.5374	0.0011259	2.7259	0.0019964	732.3738277709328	29.521	0.16891	29.514	29.442	29.61	-0.0070648	1023	52	1.0064877	0.031051338	1.0049683	406.9327		12.554382	0.044346	4.1997E-05	0.00015375	NaN	19.336	168	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13061	+		21465	8724	12398	12756							0.01885448260782141
QQSRPDIVL	9	Unmodified	_QQSRPDIVL_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2958304206501	2	528.29583	1054.57711	1.3384	0.00070707	-8.0434	-0.0042493	-6.705	-0.0035422	528.291345135829	36.35	0.21698	36.35	36.254	36.471	0	1263	34	0.85970795	0.020270646	0.85970795	348.8459	0	8.22525						106	10	2	NaN	NaN	NaN	0.38313	1	10852	10852		14.425	0	1	8677.8	+		21466	9328	12399	12757	17004	17004					0.052002438462295686
QQSSLPVIL	9	Unmodified	_QQSSLPVIL_					0	0	0			REV__nc|ENSG00000103995|O94986-3|CEP152	REV__nc|ENSG00000103995|O94986-3|CEP152	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.78984958575	2	492.78985	983.565146	2.2908	0.0011289	2.1103	0.0010399	4.4011	0.0021688	492.79270597792953	36.493	0.024132	36.494	36.494	36.519	0.0016747	1308	28	0.83204526	0.016611993	0.8305259	337.9351	0	6.7469482						32	2	2	NaN	NaN	NaN	0.68263	1	7843	7843		0.69115	0.17511	1	1921.7	+		21467	8929	12400	12758	17005	17005					0.07270627103048355
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8087706204	2	629.808771	1257.60299	1.1567	0.00072851	-1.5327	-0.00096529	-0.37596	-0.00023678	629.8079860328432	24.767	0.14472	24.755	24.731	24.875	-0.012392	1116	82	0.94976085	0.049513936	0.9482414	384.5838	0	20.04953						308	7	4	NaN	NaN	NaN	0.27719	1	17173	17173		28.896	5.8098	1	39466	+		21468	9699	12401	12759	17006	17006					-0.015509067021639567
QQYAVFENIF	10	Unmodified						0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	629.808771	1257.60299	1.5141	0.00095358	-1.208	-0.00076081	0.30608	0.00019277	629.8079479543863	24.767	0.14479	24.767	24.719	24.864	0	1116	82	0.94976085	0.04950857	0.94976085	384.5838		20.047363	0.0062738	0.00022286	0.00075972	NaN	28.896	284	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34995	+		21469	9699	12401	12759							-0.015509067021639567
QQYAVFENIF	10	Unmodified						0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	629.808771	1257.60299	1.1567	0.00072851	-1.5327	-0.00096529	-0.37596	-0.00023678	629.8079860328432	24.767	0.14472	24.755	24.731	24.875	-0.012392	1116	82	0.94976085	0.049513936	0.9482414	384.5838		20.04953	-0.0062738	-0.00018611	-0.00075972	NaN	28.896	308	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39466	+		21470	9699	12401	12759							-0.015509067021639567
QRFTYTPGTR	10	Unmodified	_QRFTYTPGTR_					0	0	0		nc|ENSG00000072736|Q12968-5|NFATC3	nc|ENSG00000072736|Q12968-5|NFATC3	nc|ENSG00000072736|Q12968-5|NFATC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.8174613197501	2	613.817461	1225.62037	0.7658	0.00047006	-7.7799	-0.0047755	-7.0141	-0.0043054	613.8128104345501	29.207	0.38612	29.2	29.127	29.513	-0.0077209	1143	67	0.9332562	0.04037732	0.93173677	378.00772	0	16.354523						443	17	2	NaN	NaN	NaN	0.44412	1	16441	16441		21.771	7.346	1	92059			21471	7909	12402	12760	17007	17007					0.01658433623538258
QRFTYTPGTR	10	Unmodified						0	0	0		nc|ENSG00000072736|Q12968-5|NFATC3	nc|ENSG00000072736|Q12968-5|NFATC3	nc|ENSG00000072736|Q12968-5|NFATC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	613.817461	1225.62037	0.94479	0.00057993	-6.5281	-0.004007	-5.5833	-0.0034271	613.8135854775282	29.136	0.19305	29.136	29.087	29.28	0	1146	76	0.93142134	0.0458858	0.93142134	377.26456		18.585693	-0.031957	0.00090488	-0.0001577	NaN	21.771	250	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64625			21472	7909	12402	12760							0.01658433623538258
QRHPVDPWR	9	Unmodified	_QRHPVDPWR_					0	0	0			REV__ENST00000215739.12_1_22:21336532-21336730:+|nuORF	REV__ENST00000215739.12_1_22:21336532-21336730:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.8125133276001	2	595.812513	1189.61047	0.95008	0.00056607	1.092	0.00065065	2.0421	0.0012167	595.8126958737782	22.669	0.1447	22.655	22.631	22.776	-0.01354	1149	40	0.92958635	0.023855448	0.9280669	376.64816	0	9.66571						123	7	2	NaN	NaN	NaN	0.59509	1	15533	15533		5.6942	0.2283	1	21090	+		21473	11454	12403	12761	17008	17008					0.023252904087939896
QRIFEFQLMPA	11	Unmodified	_QRIFEFQLMPA_					0	0	0		ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3606474029001	2	690.360647	1378.70674	-0.077234	-5.3319E-05	-8.6102	-0.0059441	-8.6874	-0.0059975	690.3554243826824	45.668	0.26405	45.679	45.607	45.872	0.011349	1185	55	0.90755045	0.033082366	0.906031	367.1409	0	13.383148						212	11	3	NaN	NaN	NaN	0.76304	1	18942	18942		3.2116	0.32214	1	20166			21474	2497	12404	12762	17009	17009					0.03253677133875499
QRKRLLFCKR	10	Unmodified	_QRKRLLFCKR_					0	0	0		ENST00000479205.5_1_2:242033778-242033826:-|nuORF	ENST00000479205.5_1_2:242033778-242033826:-|nuORF	ENST00000479205.5_1_2:242033778-242033826:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.943319024	3	449.943319	1346.80813	1.3492	0.00060706	1.5506	0.0006977	2.8998	0.0013048	449.94408821224886	30.993	0.072428	30.988	30.94	31.012	-0.0050716	1383	28	0.7858409	0.016655207	0.7843215	476.96515	0	10.108856						52	4	2	NaN	NaN	NaN	0.76991	1	18636	18636		2.9701	0.26588	1	4722.3			21475	7193	12405	12763	17010	17010					0.14859593347091504
QRLSELYLR	9	Unmodified	_QRLSELYLR_					0	0	0		nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45751724-45754149:-|nuORF	nc|ENSG00000160226|O43822-2|CFAP410	nc|ENSG00000160226|O43822-2|CFAP410	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.2277785464333	3	393.227779	1176.66151	0.63533	0.00024983	-0.48884	-0.00019222	0.14649	5.7605E-05	393.22776094384625	12.748	0.14414	12.748	12.724	12.868	0	1548	37	0.6837494	0.022341132	0.6837494	415.6089	0	13.579773						129	7	3	NaN	NaN	NaN	0.21199	1	15721	15721		21.85	3.6169	1	15009			21476	4053	12406	12764	17011	17011					0.0802419466297124
QRNHDGART	9	Unmodified	_QRNHDGART_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7604777571	2	527.760478	1053.5064	0.2404	0.00012688	-4.6586	-0.0024586	-4.4182	-0.0023318	528.2605291633226	55.05	0.096012	55.049	55.025	55.121	-0.0006218	1299	31	0.8375814	0.018452704	0.83606195	339.87198	0	7.487732						64	5	3	NaN	NaN	NaN	0.66822	1	10560	10560		1.9246	0.22244	1	2633.8	+		21477	9730	12407	12765	17012	17012					-0.018210364187325467
QRNMGPRNMQ	10	Unmodified	_QRNMGPRNMQ_					0	0	0		nc|ENSG00000171316|Q9P2D1-4|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7;CHD7|p.N1237Ifs*15|1|0.17|ENSG00000171316|chr8:60830507-60830538|TAACGTACCTAACCTATTAAACACTATGATGG/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7	nc|ENSG00000171316|Q9P2D1-4|CHD7	nc|ENSG00000171316|Q9P2D1-4|CHD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.19760761583336	3	411.197608	1230.57099	1.437	0.00059088	-4.3328	-0.0017816	-2.8959	-0.0011908	411.5300752818381	13.252	0.048026	13.252	13.252	13.3	0	1497	100	0.71537006	0.061374664	0.71537006	434.6087	0	37.286957						101	3	2	NaN	NaN	NaN	0.77421	1	17262	17262		0.71611	0	1	6176			21478	106	12408	12766	17013	17013					-0.03506920928566615
QRQIKRDPQE	10	Unmodified	_QRQIKRDPQE_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3521995941002	2	649.3522	1296.68985	1.854	0.0012039	-3.7008	-0.0024031	-1.8468	-0.0011992	649.3500026149453	30.125	0.096544	30.125	30.077	30.173	0	957	91	1.0466307	0.054664135	1.0466307	423.6703	0	22.127716						217	5	3	NaN	NaN	NaN	0.78146	1	18718	18718		0.16111	0	1	14185			21479	1167	12409	12767	17014	17014					0.05336892572290708
QRRRRRQEEG	10	Unmodified	_QRRRRRQEEG_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.58725138846677	3	457.587251	1369.73992	1.8188	0.00083225	-6.076	-0.0027803	-4.2572	-0.001948	457.9202690566849	20.959	0.024048	20.945	20.945	20.969	-0.014088	1386	28	0.78399014	0.016658783	0.7824707	475.76105	0	10.109314						29	2	2	NaN	NaN	NaN	0.73444	1	18872	18872		2.7042	0.85398	1	2223.5	+		21480	9854	12410	12768	17015	17015					0.06984440020823968
QRRRRRQEEG	10	Unmodified						0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	457.587251	1369.73992	0.92075	0.00042132	-7.1369	-0.0032658	-6.2162	-0.0028444	457.58439146479867	20.911	0.072218	20.911	20.887	20.959	0	1389	31	0.7821392	0.018508792	0.7821392	474.63782		11.231964	-0.017104	-0.00068087	-0.00016577	NaN	2.7042	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3675.7	+		21481	9854	12410	12768							0.06984440020823968
QRRRRRQEEG	10	Unmodified						0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	457.587251	1369.73992	1.8188	0.00083225	-6.076	-0.0027803	-4.2572	-0.001948	457.9202690566849	20.959	0.024048	20.945	20.945	20.969	-0.014088	1386	28	0.78399014	0.016658783	0.7824707	475.76105		10.109314	0.017104	0.00077557	0.00016577	NaN	2.7042	29	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2223.5	+		21482	9854	12410	12768							0.06984440020823968
QRSDTNYSF	9	Unmodified	_QRSDTNYSF_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1117.4908779199998	1	1117.49088	1116.4836	0.81698	0.00091297	-5.5304	-0.0061802	-4.7134	-0.0052672	1117.4843692461684	33.285	0.21717	33.283	33.235	33.452	-0.0024757	117	100	1.5493695	0.058338642	1.54785	314.12445	0	11.827759						316	10	3	NaN	NaN	NaN	0.13602	1	13127	13127		30.61	0	1	28429	+		21483	9235	12411	12769	17016	17016					-0.06998100326859458
QRSELLFSF	9	Unmodified	_QRSELLFSF_					0	0	0		nc|ENSG00000152402|P33402-2|GUCY1A2	nc|ENSG00000152402|P33402-2|GUCY1A2	nc|ENSG00000152402|P33402-2|GUCY1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7982059341001	2	563.798206	1125.58186	1.7406	0.00098136	-2.3121	-0.0013035	-0.57146	-0.00032219	563.7977983209203	27.519	0.26547	27.519	27.422	27.688	0	1248	115	0.8689189	0.06990856	0.8689189	352.29654	0	28.343903						410	12	3	NaN	NaN	NaN	0.49672	1	13913	13913		9.746	0.13435	1	49739			21484	7961	12412	12770	17017	17017					0.024091279889944417
QRSELLFSF	9	Unmodified						0	0	0		nc|ENSG00000152402|P33402-2|GUCY1A2	nc|ENSG00000152402|P33402-2|GUCY1A2	nc|ENSG00000152402|P33402-2|GUCY1A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.798206	1125.58186	1.0641	0.00059996	-0.93417	-0.00052669	0.12997	7.3276E-05	563.7977222023364	27.518	0.14479	27.508	27.484	27.629	-0.009552	1248	112	0.8689189	0.06807256	0.86739945	352.29654		27.599487	-0.0051828	0.00077016	-0.00075972	NaN	9.746	252	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41281			21485	7961	12412	12770							0.024091279889944417
QRSFARCNLR	10	Unmodified	_QRSFARCNLR_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.83038011725	2	625.83038	1249.64621	1.6743	0.0010478	-3.2144	-0.0020116	-1.5401	-0.00096382	625.8289854295523	15.7	0.14387	15.687	15.615	15.759	-0.012612	1125	34	0.9442611	0.020167947	0.94274163	382.38324	0	8.167145						108	7	3	NaN	NaN	NaN	0.62092	1	17019	17019		13.463	0	1	8298.5	+		21486	10150	12413	12771	17018	17018					0.03137004594123027
QRSVEFDREFW	11	Unmodified	_QRSVEFDREFW_					0	0	0		ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.85731476175	2	749.857315	1497.70008	1.8566	0.0013922	-9.5036	-0.0071264	-7.647	-0.0057342	750.3525529660917	26.432	0.072401	26.432	26.408	26.481	0	1017	46	1.010141	0.027398229	1.010141	408.32043	0	11.074982						65	4	2	NaN	NaN	NaN	0.73057	1	20574	20574		5.4499	1.5218	1	4867.5			21487	31	12414	12772	17019	17019					-0.02886544493162546
QRSVEFDREFW	11	Unmodified						0	0	0		ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	749.857315	1497.70008	2.1421	0.0016063	-8.0907	-0.0060669	-5.9485	-0.0044606	749.8512669759784	26.456	0.048262	26.445	26.421	26.469	-0.011137	1020	40	1.0083145	0.023745239	1.006795	407.5821		9.598297	0.0063642	0.001065	-0.001673	NaN	5.4499	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4096.5			21488	31	12414	12772							-0.02886544493162546
QRWGQRPGM	9	Unmodified	_QRWGQRPGM_					0	0	0			REV__ENST00000485515.5_1_1:17371270-17371318:-|nuORF	REV__ENST00000485515.5_1_1:17371270-17371318:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2799917787002	2	558.279992	1114.54543	1.4747	0.00082327	-11.379	-0.0063524	-9.9039	-0.0055292	558.2734057843818	20.237	0.096136	20.237	20.213	20.309	0	1221	49	0.885486	0.029444695	0.885486	359.0566	0	11.939575						70	5	2	NaN	NaN	NaN	0.66196	1	13455	13455		2.4615	0.53688	1	4853.3	+		21489	12419	12415	12773	17020	17020					-0.007260273886913637
QRWGVLAL	8	Unmodified	_QRWGVLAL_					0	0	0		ENST00000369660.8_1_X:153713031-153713436:-|nuORF	ENST00000369660.8_1_X:153713031-153713436:-|nuORF	ENST00000369660.8_1_X:153713031-153713436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5519620343001	1	942.551962	941.544686	1.7213	0.0016224	-1.7279	-0.0016287	-0.0066135	-6.2335E-06	942.5508763786019	32.562	0.072323	32.558	32.534	32.607	-0.0031052	234	79	1.4802408	0.046215534	1.4787214	300.7894	0	9.391113						64	4	2	NaN	NaN	NaN	0.8439	1	6719	6719		3.1533	0.36816	1	4355.1			21490	6643	12416	12774	17021	17021					0.07157501233893981
QSAPPLES	8	Unmodified	_QSAPPLES_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.4097740525001	1	828.409774	827.402498	2.0875	0.0017293	-0.8894	-0.00073679	1.1981	0.00099253	828.4090314707097	17.357	0.1438	17.357	17.261	17.405	0	465	43	1.3429124	0.02506864	1.3429124	273.42593	0	5.104126						123	7	2	NaN	NaN	NaN	0.81756	1	5111	5111		6.8632	0	1	12128			21491	123	12417	12775	17022	17022					-0.018107562989484904
QSDQFVKGRA	10	Unmodified	_QSDQFVKGRA_					0	0	0			REV__nc|ENSG00000236438|C9JC47|FAM157A	REV__nc|ENSG00000236438|C9JC47|FAM157A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.1999999801334	3	379.2	1134.57817	2.0204	0.00076612	0.788	0.00029881	2.8084	0.0010649	379.20023246548465	17.378	0.09598	17.364	17.34	17.436	-0.013569	1410	31	0.76917666	0.018526852	0.7676573	467.73538	0	11.266174						82	5	2	NaN	NaN	NaN	0.68669	1	13805	13805		4.6175	2.2793	1	7216.3	+		21492	13239	12418	12776	17023	17023					0.016264582151507057
QSDQFVKGRA	10	Unmodified						0	0	0			REV__nc|ENSG00000236438|C9JC47|FAM157A	REV__nc|ENSG00000236438|C9JC47|FAM157A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	379.2	1134.57817	1.7929	0.00067987	3.511	0.0013314	5.304	0.0020113	379.20105610329887	17.309	0.07189	17.309	17.309	17.381	0	1410	46	0.76917666	0.027794778	0.76917666	467.73535		16.901978	-0.027496	0.0022328	0.00075972	NaN	4.6175	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6161.4	+		21493	13239	12418	12776							0.016264582151507057
QSDQFVKGRA	10	Unmodified						0	0	0			REV__nc|ENSG00000236438|C9JC47|FAM157A	REV__nc|ENSG00000236438|C9JC47|FAM157A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	379.2	1134.57817	2.0204	0.00076612	0.788	0.00029881	2.8084	0.0010649	379.20023246548465	17.378	0.09598	17.364	17.34	17.436	-0.013569	1410	31	0.76917666	0.018526852	0.7676573	467.73538		11.266174	0.027496	-0.00086493	-0.00075972	NaN	4.6175	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7216.3	+		21494	13239	12418	12776							0.016264582151507057
QSEAGSHTL	9	Unmodified	_QSEAGSHTL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F	ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.2197884376	2	465.219788	928.425024	1.0843	0.00050444	-1.8688	-0.00086942	-0.78453	-0.00036498	465.2187125201921	12.148	0.21606	12.148	12.004	12.22	0	1377	70	0.7895419	0.042581737	0.7895419	320.93484	0	17.308746						218	10	2	NaN	NaN	NaN	0.094712	1	6549	6549		36.586	0	1	48043			21495	5898;6047;5902	12419	12777	17024	17024					-0.04205156901321061
QSEDGSHTL	9	Unmodified	_QSEDGSHTL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.21470305970007	2	487.214703	972.414853	1.5175	0.00073936	-2.3793	-0.0011592	-0.86177	-0.00041987	487.21353683649176	12.34	0.16805	12.34	12.196	12.364	0	1356	37	0.8024889	0.022186518	0.8024889	325.9823	0	9.012482						140	8	2	NaN	NaN	NaN	0.055351	1	7669	7669		44.638	26.669	1	26040			21496	5890	12420	12778	17025	17025					-0.07245764626543405
QSEDGSHTL	9	Unmodified	_QSEDGSHTL_					0	0	0		ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	ENSG00000204525|ENST00000376228|HLA-C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.21470305970007	2	487.214703	972.414853	1.1215	0.00054642	-0.81952	-0.00039928	0.30199	0.00014714	487.21416122330646	12.582	0.16818	12.573	12.501	12.669	-0.0088415	1356	43	0.8024889	0.025884211	0.8009695	325.9823	0	10.514526						137	8	2	NaN	NaN	NaN	0.12945	1	7518	7518		31.561	16.098	1	22242			21497	5890	12420	12778	17026	17026					-0.07245764626543405
QSEPGSIAL	9	Unmodified	_QSEPGSIAL_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4625379045	1	901.462538	900.455261	2.0147	0.0018162	0.066269	5.9739E-05	2.081	0.0018759	901.4614391990264	21.946	0.21696	21.946	21.874	22.091	0	402	97	1.3804773	0.057141185	1.3804773	280.7016	0	11.6188965						443	10	3	NaN	NaN	NaN	0.060816	1	6089	6089		42.318	2.8588	1	50463			21498	482	12421	12779	17027	17027					0.001052017638471625
QSEPGSIAL	9	Unmodified	_QSEPGSIAL_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.4625379045	1	901.462538	900.455261	1.59	0.0014334	-0.71882	-0.00064799	0.87121	0.00078536	901.4619220877978	21.946	0.26494	21.932	21.836	22.101	-0.013895	399	97	1.382264	0.057135105	1.3807446	281.0649	0	11.617645						454	12	3	NaN	NaN	NaN	0.060816	1	5972	5972		42.318	7.8788	1	45726			21499	482	12421	12779	17028	17028					0.001052017638471625
QSEYSKIAEN	10	Unmodified	_QSEYSKIAEN_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7776674572501	2	584.777667	1167.54078	2.3399	0.0013683	-10.677	-0.0062439	-8.3374	-0.0048755	585.2725228831573	22.863	0.19287	22.863	22.814	23.007	0	1191	127	0.90387505	0.077225685	0.90387505	366.3099	0	31.296936						641	9	4	NaN	NaN	NaN	0.65442	1	15390	15390		11.17	2.9255	1	77590	+		21500	9667	12422	12780	17029	17029					-0.03628677841129502
QSEYSKIAEN	10	Unmodified						0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.777667	1167.54078	2.3399	0.0013683	-10.677	-0.0062439	-8.3374	-0.0048755	585.2725228831573	22.863	0.19287	22.863	22.814	23.007	0	1191	127	0.90387505	0.077225685	0.90387505	366.3099		31.296936	0	0	0	NaN	11.17	641	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77590	+		21501	9667	12422	12780							-0.03628677841129502
QSFDEITAM	9	Oxidation (M)	_QSFDEITAM(Oxidation (M))_		QSFDEITAM(1)		QSFDEITAM(98)	0	0	1		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.4506525891998	1	1057.45065	1056.44338	1.7738	0.0018757	0.46698	0.0004938	2.2407	0.0023695	1057.4518091343753	20.959	0.072092	20.959	20.935	21.007	0	234	52	1.4802408	0.030193806	1.4802408	300.31735	0	6.1258545						99	4	3	NaN	NaN	NaN	0.0073225	1	10919	10919		97.85	47.888	1	6937.7			21502	4945	12423	12781	17030	17030		517			-0.08258783041651441
QSFDEITAM	9	Oxidation (M)	_QSFDEITAM(Oxidation (M))_		QSFDEITAM(1)		QSFDEITAM(61)	0	0	1		ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	ENSG00000174437|ENST00000539276|ATP2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.4506525891998	1	1057.45065	1056.44338	1.5631	0.0016529	-0.76854	-0.00081269	0.79459	0.00084024	1057.4506084919187	20.959	0.07218	20.945	20.945	21.017	-0.014088	228	52	1.4837929	0.030193806	1.4822735	301.03802	0	6.1258545						74	4	2	NaN	NaN	NaN	0.02857	1	10695	10695		60.982	28.529	1	5617			21503	4945	12423	12781	17031	17031		517			-0.08258783041651441
QSFDKEWVA	9	Unmodified	_QSFDKEWVA_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2667386302	2	555.266739	1108.51892	1.3809	0.00076679	-0.60408	-0.00033543	0.77686	0.00043136	555.2667272021121	20.141	0.096079	20.141	20.117	20.213	0	1251	67	0.8670771	0.04051715	0.8670771	351.61526	0	16.43042						175	5	2	NaN	NaN	NaN	0.27507	1	13219	13219		20.513	2.5436	1	47122			21504	2692	12424	12782	17032	17032					-0.030994377990509747
QSFKHDWVV	9	Unmodified	_QSFKHDWVV_					0	0	0			REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.2905480774999	2	573.290548	1144.56654	1.7609	0.0010095	-4.3047	-0.0024678	-2.5437	-0.0014583	573.2882106480766	21.97	0.12043	21.97	21.946	22.067	0	1209	64	0.892844	0.038623214	0.892844	361.92416	0	15.656342						106	6	2	NaN	NaN	NaN	0.54912	1	14610	14610		7.5876	2.1217	1	15082	+		21505	12276	12425	12783	17033	17033					4.2611917706381064E-05
QSFKHDWVV	9	Unmodified						0	0	0			REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.290548	1144.56654	1.7609	0.0010095	-4.3047	-0.0024678	-2.5437	-0.0014583	573.2882106480766	21.97	0.12043	21.97	21.946	22.067	0	1209	64	0.892844	0.038623214	0.892844	361.92416		15.656342	0.0070667	0.00063369	0.0016793	NaN	7.5876	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15082	+		21506	12276	12425	12783							4.2611917706381064E-05
QSGFAYHLF	9	Unmodified	_QSGFAYHLF_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5101567990998	1	1069.51016	1068.50288	1.2326	0.0013183	-9.822	-0.010505	-8.5894	-0.0091865	1069.499384267822	38.393	0.24043	38.397	38.349	38.59	0.0040283	207	52	1.496219	0.030168176	1.4946996	303.51492	0	6.1197205						173	11	3	NaN	NaN	NaN	0.074859	1	11204	11204		39.459	2.8723	1	14684			21507	2741	12426	12784	17034	17034					-0.028630992453145154
QSGSDVFL	8	Unmodified	_QSGSDVFL_					0	0	0		ENST00000282120.6_1_2:85546970-85547033:-|nuORF	ENST00000282120.6_1_2:85546970-85547033:-|nuORF	ENST00000282120.6_1_2:85546970-85547033:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4097740525	1	852.409774	851.402498	1.1685	0.00099604	7.886	0.0067221	9.0545	0.0077181	852.41682733084	28.894	0.31374	28.885	28.789	29.102	-0.0083485	405	121	1.3786905	0.071525574	1.377171	280.58124	0	14.556366						589	14	4	NaN	NaN	NaN	0.75347	1	5273	5273		15.463	0.28729	1	140980			21508	6365	12427	12785	17035	17035					-0.029147562989578546
QSGSTWTSHPL	11	Unmodified	_QSGSTWTSHPL_					0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.7858268403501	2	600.785827	1199.5571	2.0922	0.001257	1.4945	0.00089787	3.5867	0.0021548	600.7863455801411	25.588	0.33775	25.588	25.467	25.805	0	1149	127	0.92958635	0.07713395	0.92958635	376.61234	0	31.25003						1058	15	4	NaN	NaN	NaN	0.4078	1	16458	16458		21.771	3.8014	1	252870			21509	7885	12428	12786	17036	17036					-0.03469551884381872
QSGSTWTSHPL	11	Unmodified						0	0	0		MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	600.785827	1199.5571	1.9663	0.0011813	1.8158	0.0010909	3.7821	0.0022722	600.7865782675957	25.612	0.38606	25.6	25.479	25.865	-0.0116	1149	124	0.92958635	0.07529336	0.9280669	376.61234		30.504333	0.0061605	0.00022336	-0.00075972	NaN	21.771	1074	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258680			21510	7885	12428	12786							-0.03469551884381872
QSHLLARG	8	Unmodified	_QSHLLARG_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.25122595175003	2	441.251226	880.487899	1.3799	0.00060888	-1.3939	-0.00061505	-0.013989	-6.1725E-06	441.2507528078509	11.98	0.31213	11.98	11.884	12.196	0	1440	49	0.7506418	0.029671907	0.7506418	305.36478	0	12.070679						416	14	3	NaN	NaN	NaN	0.20037	1	5812	5812		49.961	4.7964	1	103980	+		21511	12606	12429	12787	17037	17037					0.04287453677375197
QSHLLARG	8	Unmodified	_QSHLLARG_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.25122595175003	2	441.251226	880.487899	1.1781	0.00051985	-0.3935	-0.00017363	0.78464	0.00034622	441.2512145007211	11.956	0.11996	11.956	11.908	12.028	0	1383	34	0.7858409	0.020356357	0.7858409	319.68393	0	8.281067						112	6	3	NaN	NaN	NaN	0.13059	1	5813	5813		58.235	2.7418	1	12538	+		21512	12606	12429	12787	17038	17038					0.04287453677375197
QSHLLARG	8	Unmodified	_QSHLLARG_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.25122595175003	2	441.251226	880.487899	1.1144	0.00049175	-1.4701	-0.0006487	-0.35568	-0.00015694	441.2506863572215	11.982	0.33593	11.974	11.878	12.214	-0.0081863	1437	49	0.7524962	0.029668689	0.75097674	306.11914	0	12.069366						437	15	3	NaN	NaN	NaN	0.26128	1	5688	5688		45.165	7.0341	1	107270	+		21513	12606	12429	12787	17039	17039					0.04287453677375197
QSHLLARG	8	Unmodified						0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	441.251226	880.487899	1.3799	0.00060888	-1.3939	-0.00061505	-0.013989	-6.1725E-06	441.2507528078509	11.98	0.31213	11.98	11.884	12.196	0	1440	49	0.7506418	0.029671907	0.7506418	305.36478		12.070679	0.0031078	2.6201E-05	-0.00016748	NaN	49.961	416	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103980	+		21514	12606	12429	12787							0.04287453677375197
QSHLLARG	8	Unmodified						0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	441.251226	880.487899	1.1144	0.00049175	-1.4701	-0.0006487	-0.35568	-0.00015694	441.2506863572215	11.982	0.33593	11.974	11.878	12.214	-0.0081863	1437	49	0.7524962	0.029668689	0.75097674	306.11914		12.069366	-0.0031078	-4.1093E-05	0.00016748	NaN	49.961	437	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107270	+		21515	12606	12429	12787							0.04287453677375197
QSIETTNHV	9	Unmodified	_QSIETTNHV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7539953957	2	514.753995	1027.49344	0.89449	0.00046044	4.6654	0.0024015	5.5599	0.002862	515.2582779685534	30.462	0.14479	30.456	30.408	30.553	-0.0057545	1275	91	0.85233563	0.055298448	0.8508162	345.9718	0	22.446198						366	7	6	NaN	NaN	NaN	0.53317	1	9470	9470		8.2448	0.65722	1	49593			21516	5126	12430	12788	17040	17040					-0.019209123214750434
QSIETTNHV	9	Unmodified						0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.753995	1027.49344	1.7726	0.00091244	3.8298	0.0019714	5.6024	0.0028839	515.2574122151341	30.487	0.12066	30.487	30.439	30.56	0	1281	73	0.84864825	0.044238746	0.84864825	344.47507		17.95697	0.015437	-0.00053767	-0.001084	NaN	8.2448	338	6	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44327			21517	5126	12430	12788							-0.019209123214750434
QSILVRTRG	9	Unmodified	_QSILVRTRG_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3118148358501	2	515.311815	1028.60908	1.4433	0.00074373	-2.9664	-0.0015286	-1.5231	-0.00078487	515.3096733798754	12.916	0.096121	12.916	12.892	12.988	0	1248	34	0.8689189	0.020257473	0.8689189	352.6981	0	8.222595						71	5	2	NaN	NaN	NaN	0.084037	1	9733	9733		38.131	5.6781	1	5189.5			21518	5304;7495	12431	12789	17041	17041					0.09591656320048969
QSLSPMSQRP	10	Unmodified	_QSLSPMSQRP_					0	0	0		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.7847725953501	2	565.784773	1129.55499	2.0485	0.001159	-4.3762	-0.002476	-2.3277	-0.0013169	565.7824169391201	19.804	0.048033	19.804	19.804	19.852	0	1239	49	0.87444305	0.02945429	0.87444305	354.5212	0	11.941498						70	3	2	NaN	NaN	NaN	0.6772	1	14062	14062		9.6116	3.3614	1	16090			21519	3238	12432	12790	17042	17042					-0.0046030389382849535
QSLSPMSQRP	10	Unmodified						0	0	0		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.784773	1129.55499	1.3913	0.0007872	-6.3427	-0.0035886	-4.9514	-0.0028014	565.7808439983677	19.827	0.072224	19.813	19.789	19.861	-0.014141	1239	46	0.87444305	0.027614892	0.8729236	354.5212		11.19577	0.0045342	-0.0011206	-0.00075972	NaN	9.6116	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15680			21520	3238	12432	12790							-0.0046030389382849535
QSNFYLRT	8	Unmodified	_QSNFYLRT_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5159704585	1	1028.51597	1027.50869	1.5523	0.0015966	-6.3102	-0.0064902	-4.7579	-0.0048936	1028.5093478530773	24.261	0.048231	24.261	24.237	24.285	0	108	85	1.5546752	0.049543977	1.5546752	315.53342	0	10.055328						101	3	2	NaN	NaN	NaN	0.75347	1	9662	9662		15.463	0.28729	1	15171	+		21521	8930	12433	12791	17043	17043					-0.003960007336218041
QSNGGGETE	9	Unmodified	_QSNGGGETE_					0	0	0			REV__ENSG00000214309|ENST00000398075|MBLAC1	REV__ENSG00000214309|ENST00000398075|MBLAC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.67795341265	2	439.677953	877.341354	0.22736	9.9963E-05	6.8139	0.0029959	7.0412	0.0030959	439.68079123140416	35.12	0.16892	35.12	35.072	35.241	0	1368	43	0.7950918	0.025895417	0.7950918	323.465	0	10.534973						97	8	2	NaN	NaN	NaN	0.59509	1	5764	5764		5.6942	0.2283	1	12248	+		21522	11285	12434	12792	17044	17044					-0.10222313069027678
QSNGGGETE	9	Unmodified						0	0	0			REV__ENSG00000214309|ENST00000398075|MBLAC1	REV__ENSG00000214309|ENST00000398075|MBLAC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	439.677953	877.341354	0.22736	9.9963E-05	6.8139	0.0029959	7.0412	0.0030959	439.68079123140416	35.12	0.16892	35.12	35.072	35.241	0	1368	43	0.7950918	0.025895417	0.7950918	323.465		10.534973	0.00073876	0.00059374	-0.00016507	NaN	5.6942	97	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12248	+		21523	11285	12434	12792							-0.10222313069027678
QSPVNVEYY	9	Unmodified	_QSPVNVEYY_					0	0	0			REV__ENST00000484526.5_1_2:241463300-241500177:-|nuORF	REV__ENST00000484526.5_1_2:241463300-241500177:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7587464226001	2	549.758746	1097.50294	1.808	0.00099398	-7.8578	-0.0043199	-6.0497	-0.0033259	549.754058431128	15.244	0.096067	15.232	15.136	15.232	-0.012201	1260	43	0.8615505	0.025800347	0.8600311	349.41724	0	10.463806						80	5	3	NaN	NaN	NaN	0.40649	1	12395	12395		13.463	4.5011	1	4481.5	+		21524	9904	12435	12793	17045	17045					-0.04191144035939942
QSQEYEVLL	9	Unmodified	_QSQEYEVLL_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.5520811933	1	1108.55208	1107.5448	0.95096	0.0010542	3.4668	0.0038431	4.4178	0.0048973	1108.5560421407306	28.097	0.14477	28.088	28.04	28.185	-0.0089798	78	67	1.5723488	0.038861513	1.5708294	318.8148	0	7.879669						173	7	2	NaN	NaN	NaN	0.40649	1	12800	12800		13.463	2.8581	1	18371		+	21525	177	12436	12794	17046	17046					-0.00466588347421748
QSQEYEVLL	9	Unmodified						0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1108.55208	1107.5448	1.9835	0.0021988	4.3713	0.0048459	6.3548	0.0070447	1108.5569027319211	28.098	0.1448	28.098	28.05	28.194	0	78	70	1.5723488	0.04062581	1.5723488	318.8148		8.237396	0.0048604	0.00046446	0.00075972	NaN	13.463	176	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21283		+	21526	177	12436	12794							-0.00466588347421748
QSQVSLAQSW	10	Unmodified	_QSQVSLAQSW_					0	0	0		ENST00000493559.1_1_9:123535041-123538434:-|nuORF	ENST00000493559.1_1_9:123535041-123538434:-|nuORF	ENST00000493559.1_1_9:123535041-123538434:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.28292001065	2	567.28292	1132.55129	1.8575	0.0010537	0.044219	2.5085E-05	1.9017	0.0010788	567.7841651969377	24.912	0.048265	24.912	24.888	24.936	0	1215	76	0.8891654	0.045984983	0.8891654	360.4785	0	18.642883						85	3	2	NaN	NaN	NaN	0.5626	1	14185	14185		16.858	0.27415	1	56949			21527	7278	12437	12795	17047	17047					-0.009686503960665505
QSQVSLAQSW	10	Unmodified						0	0	0		ENST00000493559.1_1_9:123535041-123538434:-|nuORF	ENST00000493559.1_1_9:123535041-123538434:-|nuORF	ENST00000493559.1_1_9:123535041-123538434:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.28292	1132.55129	1.484	0.00084185	-5.5215	-0.0031322	-4.0375	-0.0022904	567.2799147979381	24.671	0.096466	24.658	24.634	24.731	-0.012392	1218	82	0.8873258	0.049679935	0.8858064	359.73273		20.140839	-0.1269	-0.00095799	-0.0016795	NaN	16.858	230	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251060			21528	7278	12437	12795							-0.009686503960665505
QSSFCYDTEG	10	Unmodified	_QSSFCYDTEG_					0	0	0			REV__ENST00000534699.5_1_1:115269604-115269679:-|nuORF	REV__ENST00000534699.5_1_1:115269604-115269679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.47821122516655	3	379.478211	1135.4128	1.5286	0.00058006	4.0335	0.0015306	5.5621	0.0021107	379.48013120819843	24.936	0.12067	24.936	24.888	25.009	0	1488	34	0.7209441	0.020438194	0.7209441	438.40134	0	12.428345						82	6	2	NaN	NaN	NaN	0.73444	1	14282	14282		2.7042	0.85398	1	5417.7	+		21529	12668	12438	12796	17048	17048					-0.14948561426717788
QSSYLHVL	8	Unmodified	_QSSYLHVL_					0	0	0			REV__ENST00000457654.6_1_17:30807743-30807920:+|nuORF	REV__ENST00000457654.6_1_17:30807743-30807920:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4992577618001	1	946.499258	945.491981	1.2056	0.0011411	-1.0108	-0.00095667	0.19486	0.00018444	946.4983207653262	26.842	0.14478	26.832	26.759	26.904	-0.010645	285	76	1.4500183	0.044501662	1.4484988	294.63034	0	9.042328						152	7	2	NaN	NaN	NaN	0.528	1	6830	6830		29.598	6.2639	1	24812	+		21530	12253	12439	12797	17049	17049					0.01705498380431436
QSTLMAQQNL	10	Unmodified	_QSTLMAQQNL_					0	0	0		ENST00000519651.5_2_8:143352450-143353011:-|nuORF	ENST00000519651.5_2_8:143352450-143353011:-|nuORF	ENST00000519651.5_2_8:143352450-143353011:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.28460541985	2	567.284605	1132.55466	1.5502	0.00087943	-9.0581	-0.0051385	-7.5079	-0.0042591	567.2789106748338	27.326	0.048275	27.326	27.277	27.326	0	1221	61	0.885486	0.036801934	0.885486	358.98685	0	14.919952						81	3	2	NaN	NaN	NaN	0.66626	1	14181	14181		10.36	0	1	13919			21531	7392	12440	12798	17050	17050					-0.0063172361371925945
QSTLSYILI	9	Unmodified	_QSTLSYILI_					0	0	0		nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF	nc|ENSG00000162687|Q6UVM3-3|KCNT2	nc|ENSG00000162687|Q6UVM3-3|KCNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5877384181	1	1037.58774	1036.58046	1.73	0.001795	-0.73432	-0.00076192	0.99567	0.0010331	1037.5865063368883	27.857	0.16891	27.857	27.808	27.977	0	114	73	1.5511382	0.042457223	1.5511382	314.77902	0	8.616058						252	8	3	NaN	NaN	NaN	0.04743	1	10076	10076		48.002	8.5435	1	44874			21532	4161	12441	12799	17051	17051					0.06363493900221329
QSVDEDPML	9	Unmodified	_QSVDEDPML_					0	0	0		nc|ENSG00000140254|Q1HG43-3|DUOXA1;ENSG00000140254|ENST00000560572|DUOXA1;nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-3|DUOXA1	nc|ENSG00000140254|Q1HG43-3|DUOXA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.4506525892	1	1033.45065	1032.44338	1.8929	0.0019562	-1.6355	-0.0016903	0.25732	0.00026593	1033.4483513627868	22.742	0.072392	22.742	22.694	22.766	0	201	82	1.4997677	0.047934413	1.4997677	304.3702	0	9.728058						88	4	2	NaN	NaN	NaN	0.015029	1	9871	9871		78.289	25.149	1	7250.4			21533	3253	12442	12800	17052	17052					-0.07154783041642077
QSVDEDPML	9	Unmodified	_QSVDEDPML_					0	0	0		nc|ENSG00000140254|Q1HG43-3|DUOXA1;ENSG00000140254|ENST00000560572|DUOXA1;nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-3|DUOXA1	nc|ENSG00000140254|Q1HG43-3|DUOXA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.4506525892	1	1033.45065	1032.44338	1.5863	0.0016394	1.5145	0.0015652	3.1008	0.0032045	1033.453249222087	22.741	0.096458	22.728	22.68	22.776	-0.01354	195	73	1.5033154	0.042587996	1.501796	305.0902	0	8.643036						100	5	2	NaN	NaN	NaN	0.44082	1	9664	9664		12.049	6.1289	1	6674.8			21534	3253	12442	12800	17053	17053					-0.07154783041642077
QSVVCNNEAE	10	Unmodified	_QSVVCNNEAE_					0	0	0		FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B;nc|ENSG00000031003|Q9NYF5-3|FAM13B	FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant	FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7349453628	2	546.734945	1091.45534	0.93458	0.00051097	4.3255	0.0023649	5.26	0.0028758	547.2360929565031	35.77	0.12048	35.77	35.746	35.867	0.00053024	1266	61	0.85786515	0.036869586	0.8563457	347.9464	0	14.954163						166	6	3	NaN	NaN	NaN	0.60686	1	12130	12130		14.425	0	1	13618			21535	492	12443	12801	17054	17054					-0.0867316629846755
QSYGGSHI	8	Unmodified	_QSYGGSHI_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.69849188949996	2	424.698492	847.382431	0.72073	0.00030609	-5.0257	-0.0021344	-4.3049	-0.0018283	424.6968613149223	33.335	0.096531	33.335	33.311	33.407	0	1461	31	0.7376554	0.018559039	0.7376554	300.26172	0	7.554413						69	5	2	NaN	NaN	NaN	0.84455	1	5354	5354		2.7852	0	1	5599.2	+		21536	11376	12444	12802	17055	17055					-0.04736507238908416
QSYSGPSHI	9	Unmodified	_QSYSGPSHI_					0	0	0			REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4530358507001	1	975.453036	974.445759	2.4758	0.002415	-0.46608	-0.00045463	2.0097	0.0019604	975.4521564222943	18.604	0.095921	18.604	18.58	18.676	0	372	79	1.3983358	0.046377897	1.3983358	284.0077	0	9.419525						157	5	2	NaN	NaN	NaN	0.14787	1	7725	7725		28.896	0.22906	1	12268	+		21537	12640	12445	12803	17056	17056					-0.04248566521664543
QSYSGPSHI	9	Unmodified	_QSYSGPSHI_					0	0	0			REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.4530358507001	1	975.453036	974.445759	2.1526	0.0020998	-1.5281	-0.0014906	0.62447	0.00060914	975.4510200265929	18.602	0.12	18.588	18.564	18.684	-0.014059	372	67	1.3983358	0.03925526	1.3968164	284.00772	0	7.972931						118	6	2	NaN	NaN	NaN	0.14787	1	7573	7573		28.896	2.164	1	10142	+		21538	12640	12445	12803	17057	17057					-0.04248566521664543
QSYSGPSHI	9	Unmodified						0	0	0			REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	975.453036	974.445759	2.4758	0.002415	-0.46608	-0.00045463	2.0097	0.0019604	975.4521564222943	18.604	0.095921	18.604	18.58	18.676	0	372	79	1.3983358	0.046377897	1.3983358	284.0077		9.419525	0.0083816	0.00061766	0.00075972	NaN	28.896	157	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12268	+		21539	12640	12445	12803							-0.04248566521664543
QSYSGPSHI	9	Unmodified						0	0	0			REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	975.453036	974.445759	2.1526	0.0020998	-1.5281	-0.0014906	0.62447	0.00060914	975.4510200265929	18.602	0.12	18.588	18.564	18.684	-0.014059	372	67	1.3983358	0.03925526	1.3968164	284.00772		7.972931	-0.0083816	-0.00041831	-0.00075972	NaN	28.896	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10142	+		21540	12640	12445	12803							-0.04248566521664543
QTAISHFL	8	Unmodified	_QTAISHFL_					0	0	0			REV__ENST00000514536.5_1_4:53464769-53497293:-|nuORF	REV__ENST00000514536.5_1_4:53464769-53497293:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4886930755	1	916.488693	915.481417	1.6914	0.0015501	-1.2867	-0.0011792	0.40471	0.00037091	916.4897410248492	28.532	0.16895	28.532	28.484	28.653	0	339	55	1.4179583	0.032090664	1.4179583	288.25162	0	6.52359						128	8	2	NaN	NaN	NaN	0.63486	1	6335	6335		23.118	5.3186	1	11646	+		21541	9056	12446	12804	17058	17058					0.020295157259852203
QTAPGGIF	8	Unmodified	_QTAPGGIF_					0	0	0			REV__nc|ENSG00000100934|Q15436-2|SEC23A	REV__nc|ENSG00000100934|Q15436-2|SEC23A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	790.4093801220001	1	790.40938	789.402104	1.503	0.001188	4.8228	0.003812	6.3258	0.005	790.4130093434934	34.131	0.33775	34.131	34.035	34.372	0	522	88	1.3088527	0.0520581	1.3088527	266.70056	0	10.607697						584	15	3	NaN	NaN	NaN	0.75561	1	4621	4621		15.175	3.6269	1	75122	+		21542	8837	12447	12805	17059	17059					-0.0010213122814093367
QTAPGGIF	8	Unmodified						0	0	0			REV__nc|ENSG00000100934|Q15436-2|SEC23A	REV__nc|ENSG00000100934|Q15436-2|SEC23A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	790.40938	789.402104	1.503	0.001188	4.8228	0.003812	6.3258	0.005	790.4130093434934	34.131	0.33775	34.131	34.035	34.372	0	522	88	1.3088527	0.0520581	1.3088527	266.70056		10.607697	0.013295	0.00019188	-0.00013745	NaN	15.175	584	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75122	+		21543	8837	12447	12805							-0.0010213122814093367
QTCPAATF	8	Unmodified	_QTCPAATF_					0	0	0		ENST00000309137.12_1_16:57187904-57188108:-|nuORF	ENST00000309137.12_1_16:57187904-57188108:-|nuORF	ENST00000309137.12_1_16:57187904-57188108:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	838.3763654341001	1	838.376365	837.369089	2.0487	0.0017176	-4.1849	-0.0035085	-2.1362	-0.001791	838.3730182274394	25.395	0.24123	25.395	25.346	25.588	0	480	64	1.3339561	0.037632942	1.3339561	271.54956	0	7.6608276						321	11	3	NaN	NaN	NaN	0.49126	1	5229	5229		31.561	0	1	37698			21544	6441	12448	12806	17060	17060					-0.056100813425018714
QTCPAATF	8	Unmodified						0	0	0		ENST00000309137.12_1_16:57187904-57188108:-|nuORF	ENST00000309137.12_1_16:57187904-57188108:-|nuORF	ENST00000309137.12_1_16:57187904-57188108:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	838.376365	837.369089	1.5977	0.0013395	-3.931	-0.0032957	-2.3333	-0.0019562	838.3727381482502	25.394	0.28954	25.382	25.31	25.6	-0.012011	480	61	1.3339561	0.03583896	1.3324367	271.54953		7.2956543	-0.0061507	0.00012697	-0.00075972	NaN	31.561	288	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33849			21545	6441	12448	12806							-0.056100813425018714
QTDLRPQIQ	9	Unmodified	_QTDLRPQIQ_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7987372503501	2	549.798737	1097.58292	1.2582	0.00069175	2.3608	0.001298	3.619	0.0019897	549.8000801437423	24.695	0.096466	24.682	24.658	24.755	-0.012392	1215	82	0.8891654	0.049658418	0.88764596	360.61658	0	20.139862						119	5	3	NaN	NaN	NaN	0.49672	1	12426	12426		9.746	0	1	11369			21546	7769	12449	12807	17061	17061					0.03803342357900874
QTDLRPQIQ	9	Unmodified						0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.798737	1097.58292	1.1389	0.00062619	2.1314	0.0011718	3.2703	0.001798	549.8001187947967	24.695	0.096474	24.695	24.647	24.743	0	1215	73	0.8891654	0.044128895	0.8891654	360.61658		17.897247	0.0062799	-0.00011193	0.00075972	NaN	9.746	116	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12934			21547	7769	12449	12807							0.03803342357900874
QTEESQILKEL	11	Unmodified	_QTEESQILKEL_					0	0	0			REV__ENSG00000124120|ENST00000262605|TTPAL	REV__ENSG00000124120|ENST00000262605|TTPAL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3484568869	2	659.348457	1316.68236	0.88554	0.00058388	-9.9635	-0.0065694	-9.0779	-0.0059855	659.3438916598635	41.69	0.2165	41.69	41.594	41.811	0	1242	70	0.87260187	0.042329073	0.87260187	353.16785	0	17.131805						414	10	5	NaN	NaN	NaN	0.75376	1	19063	19063		3.9281	0.7165	1	31815	+		21548	9368	12450	12808	17062	17062					0.03668695461306015
QTHGLVHR	8	Unmodified	_QTHGLVHR_					0	0	0			REV__nc|ENSG00000288702|P35503-3|UGT1A3	REV__nc|ENSG00000288702|P35503-3|UGT1A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.51050881490005	3	316.510509	946.509697	1.5231	0.00048208	-11.179	-0.0035383	-9.6559	-0.0030562	316.506748369941	12.87	0.11984	12.861	12.837	12.957	-0.00947	1530	40	0.6949163	0.024185777	0.69339687	423.58237	0	14.74231						89	6	2	NaN	NaN	NaN	0.82212	1	6868	6868		6.2502	3.6508	1	9463.5	+		21549	13256	12451	12809	17063	17063					0.03430258425953525
QTLPVPLE	8	Unmodified	_QTLPVPLE_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2;ENST00000489526.1_1_10:102762295-102762823:+|nuORF;LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5087598156001	1	896.50876	895.501483	2.1558	0.0019327	-0.40067	-0.0003592	1.7551	0.0015735	896.5086567030836	25.95	0.072403	25.95	25.901	25.974	0	414	73	1.3733286	0.042883277	1.3733286	279.27127	0	8.720459						97	4	2	NaN	NaN	NaN	0.84756	1	5997	5997		1.072	0	1	7942.6			21550	1648	12452	12810	17064	17064					0.04955266665956515
QTLRADEIL	9	Unmodified	_QTLRADEIL_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7956632451501	2	529.795663	1057.57677	0.90929	0.00048174	-8.0429	-0.0042611	-7.1336	-0.0037794	529.7912664726267	33.383	0.14482	33.383	33.335	33.48	0	1278	43	0.85049206	0.025808692	0.85049206	345.0937	0	10.472076						147	7	3	NaN	NaN	NaN	0.31737	1	10997	10997		17.799	6.2505	1	18629			21551	32	12453	12811	17065	17065					0.05028824126384279
QTLREEQLFF	10	Unmodified	_QTLREEQLFF_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-11|NIN	REV__nc|ENSG00000100503|Q8N4C6-11|NIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.84060206505	2	655.840602	1309.66665	0.86361	0.00056639	0.73256	0.00048045	1.5962	0.0010468	655.8417504320946	37.072	0.096466	37.072	37.048	37.145	0	1104	40	0.9570911	0.023819447	0.9570911	387.38464	0	9.640991						82	5	2	NaN	NaN	NaN	0.60059	1	18936	18936		14.854	3.8889	1	7382.3	+		21552	13095	12454	12812	17066	17066					0.02420453734930561
QTNSASGE	8	Unmodified	_QTNSASGE_					0	0	0			REV__ENSG00000186086|ENST00000495380|NBPF6	REV__ENSG00000186086|ENST00000495380|NBPF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.332252013	1	793.332252	792.324976	1.3789	0.0010939	-9.5791	-0.0075994	-8.2001	-0.0065054	793.3252795008065	27.663	0.19302	27.653	27.605	27.798	-0.009552	510	70	1.316029	0.041256666	1.3145095	268.146	0	8.4062195						427	9	4	NaN	NaN	NaN	0.80071	1	4565	4565		9.1232	3.0329	1	66505	+		21553	10988	12455	12813	17067	17067					-0.07949394235140517
QTNSASGE	8	Unmodified						0	0	0			REV__ENSG00000186086|ENST00000495380|NBPF6	REV__ENSG00000186086|ENST00000495380|NBPF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	793.332252	792.324976	1.9064	0.0015124	-9.0836	-0.0072063	-7.1772	-0.0056939	793.3258259922948	27.664	0.2413	27.664	27.615	27.857	0	513	82	1.3142352	0.048442006	1.3142352	267.78052		9.87027	0.0051767	0.00017459	-0.00013716	NaN	9.1232	400	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62676	+		21554	10988	12455	12813							-0.07949394235140517
QTNSASGE	8	Unmodified						0	0	0			REV__ENSG00000186086|ENST00000495380|NBPF6	REV__ENSG00000186086|ENST00000495380|NBPF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	793.332252	792.324976	1.3789	0.0010939	-9.5791	-0.0075994	-8.2001	-0.0065054	793.3252795008065	27.663	0.19302	27.653	27.605	27.798	-0.009552	510	70	1.316029	0.041256666	1.3145095	268.146		8.4062195	-0.0051767	-0.00021845	0.00013716	NaN	9.1232	427	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66505	+		21555	10988	12455	12813							-0.07949394235140517
QTQETRTLTQF	11	Unmodified	_QTQETRTLTQF_					0	0	0		ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN	ENST00000462351.5_1_2:220154950-220159983:-|nuORF	ENST00000462351.5_1_2:220154950-220159983:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8438730355	2	676.843873	1351.67319	1.0856	0.0007348	-8.8997	-0.0060237	-7.814	-0.0052889	676.8376085458991	29.425	0.048265	29.425	29.377	29.425	0	1095	46	0.9625867	0.027478099	0.9625867	389.4826	0	11.118195						85	3	2	NaN	NaN	NaN	0.70497	1	19567	19567		7.1304	1.6804	1	9422.1			21556	590	12456	12814	17068	17068					0.011423468956536453
QTRRRRKRRRA	11	Unmodified	_QTRRRRKRRRA_					0	0	0		ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4856138036	2	770.485614	1538.95667	1.7995	0.0013865	-3.0975	-0.0023865	-1.298	-0.0010001	770.4836290477328	53.852	0.096447	53.852	53.755	53.852	0	696	37	1.2044523	0.021667123	1.2044523	486.74564	0	8.756165						81	5	3	NaN	NaN	NaN	0.78138	1	20679	20679		0	0	1	6088.7			21557	6412	12457	12815	17069	17069					0.20875460364982246
QTRRRRKRRRA	11	Unmodified	_QTRRRRKRRRA_					0	0	0		ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4856138036	2	770.485614	1538.95667	0.16467	0.00012688	-1.2611	-0.00097168	-1.0965	-0.0008448	770.4835646183118	53.802	0.096428	53.801	53.753	53.849	-0.00059128	693	31	1.2062578	0.018051982	1.2047384	487.47528	0	7.295227						72	5	3	NaN	NaN	NaN	0.78138	1	19653	19653		0	0	1	5207.4			21558	6412	12457	12815	17070	17070					0.20875460364982246
QTTLKYAIK	9	Unmodified	_QTTLKYAIK_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3187742007	2	533.318774	1064.623	1.8223	0.00097186	-11.01	-0.0058717	-9.1875	-0.0048999	533.3131342475999	30.318	0.12067	30.318	30.294	30.415	0	1224	52	0.883646	0.031273186	0.883646	358.5157	0	12.688232						121	6	2	NaN	NaN	NaN	0.59509	1	11347	11347		5.6942	0.78442	1	19498			21559	3038	12458	12816	17071	17071					0.09326889028443475
QVAEDYEL	8	Unmodified	_QVAEDYEL_					0	0	0		ENST00000576922.5_1_17:7840526-7847657:+|nuORF;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB	ENST00000576922.5_1_17:7840526-7847657:+|nuORF	ENST00000576922.5_1_17:7840526-7847657:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4414681114	1	966.441468	965.434192	2.1365	0.0020648	-1.1872	-0.0011474	0.94928	0.00091742	966.4408344711649	21.585	0.072325	21.571	21.499	21.571	-0.013895	321	37	1.4286518	0.021382451	1.4271324	290.20276	0	4.3434143						60	4	2	NaN	NaN	NaN	0.098732	1	7338	7338		64.55	32.989	1	3395.6			21560	4709	12459	12817	17072	17072					-0.049908083356626776
QVANSAFVER	10	Unmodified	_QVANSAFVER_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.79091221825	2	560.790912	1119.56727	1.6773	0.00094064	-1.5312	-0.0008587	0.14612	8.1942E-05	560.7902768454045	15.486	0.12007	15.486	15.462	15.582	0	1236	58	0.876284	0.034978867	0.876284	355.3058	0	14.1828						112	6	3	NaN	NaN	NaN	0.0027333	1	13652	13652		83.529	50.751	1	23778			21561	1139;909	12460	12818	17073	17073					0.012270558408545185
QVANSAFVER	10	Unmodified	_QVANSAFVER_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.79091221825	2	560.790912	1119.56727	1.6744	0.000939	-1.2203	-0.00068431	0.45416	0.00025469	560.790419274766	15.508	0.16778	15.496	15.448	15.616	-0.012202	1230	61	0.8799654	0.036821842	0.878446	356.79846	0	14.930084						225	8	3	NaN	NaN	NaN	4.8409E-06	1	13253	13253		123.53	68.117	1	43121			21562	1139;909	12460	12818	17074	17074					0.012270558408545185
QVATVIQSR	9	Unmodified	_QVATVIQSR_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.29054807750003	2	501.290548	1000.56654	1.4446	0.00072415	-1.1679	-0.00058544	0.27671	0.00013871	501.28977886896166	14.765	0.12005	14.765	14.741	14.861	0	1305	34	0.83389086	0.020299077	0.83389086	338.6053	0	8.242584						73	6	2	NaN	NaN	NaN	0.53237	1	8626	8626		8.2775	2.0273	1	5417.5			21563	742	12461	12819	17075	17075					0.06628261191804086
QVATVIQSR	9	Unmodified						0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.290548	1000.56654	1.3581	0.00068078	-0.54609	-0.00027375	0.81197	0.00040703	501.28969117121	14.764	0.072095	14.752	14.752	14.824	-0.011738	1305	52	0.83389086	0.031361163	0.8323714	338.6053		12.734375	-0.0066372	0.0004005	-0.00075972	NaN	8.2775	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4974			21564	742	12461	12819							0.06628261191804086
QVAVPIHI	8	Unmodified	_QVAVPIHI_					0	0	0			REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.5301639597002	1	876.530164	875.522887	1.7254	0.0015124	1.6682	0.0014622	3.3936	0.0029746	876.5315900274305	55.821	0.09605	55.821	55.797	55.893	0	366	67	1.4019053	0.039259553	1.4019053	285.18085	0	7.9862976						164	5	4	NaN	NaN	NaN	0.84207	1	5741	5741		3.5732	0	1	35713	+		21565	11171	12462	12820	17076	17076					0.0801469648533839
QVAVPIHI	8	Unmodified						0	0	0			REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	876.530164	875.522887	1.7254	0.0015124	1.6682	0.0014622	3.3936	0.0029746	876.5315900274305	55.821	0.09605	55.821	55.797	55.893	0	366	67	1.4019053	0.039259553	1.4019053	285.18085		7.9862976	0.0013843	-0.00081103	-0.00013249	NaN	3.5732	164	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35713	+		21566	11171	12462	12820							0.0801469648533839
QVAVPIHI	8	Unmodified						0	0	0			REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	REV__ENST00000479449.1_1_3:49070551-49094468:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	876.530164	875.522887	-0.59962	-0.00052558	3.834	0.0033606	3.2344	0.002835	876.5330409200826	55.819	0.071938	55.818	55.818	55.89	-0.00059128	363	55	1.4036897	0.032117963	1.4021703	285.54382		6.5335693	-0.0013843	0.0010874	0.00013249	NaN	3.5732	122	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16138	+		21567	11171	12462	12820							0.0801469648533839
QVAYLRGF	8	Unmodified	_QVAYLRGF_					0	0	0			REV__ENST00000299167.12_1_16:47697605-47699884:+|nuORF	REV__ENST00000299167.12_1_16:47697605-47699884:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.5203275549002	1	953.520328	952.513051	2.1015	0.0020038	-11.223	-0.010702	-9.1218	-0.0086979	953.5103946993094	26.143	0.096533	26.143	26.119	26.215	0	225	43	1.4855686	0.024858832	1.4855686	301.82193	0	5.0505676						73	5	2	NaN	NaN	NaN	0.76633	1	7154	7154		13.737	1.1492	1	5473.7	+		21568	11642	12463	12821	17077	17077					0.034895084799586584
QVDPEEPV	8	Unmodified	_QVDPEEPV_					0	0	0		ENST00000426448.1_1_22:20804701-20805505:+|nuORF	ENST00000426448.1_1_22:20804701-20805505:+|nuORF	ENST00000426448.1_1_22:20804701-20805505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4309034251	1	912.430903	911.423627	1.8407	0.0016795	-2.9079	-0.0026533	-1.0672	-0.00097373	912.4270903045192	26.456	0.096512	26.445	26.421	26.517	-0.011137	303	43	1.4393384	0.024930239	1.437819	292.61722	0	5.0682983						97	5	2	NaN	NaN	NaN	0.82212	1	6120	6120		6.2502	0.15988	1	8543.3			21569	6946	12464	12822	17078	17078					-0.035627909900881605
QVDPSVDVL	9	Unmodified	_QVDPSVDVL_					0	0	0		ENSG00000120158|ENST00000381750|RCL1;AK3-RCL1|1|fusion	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.5044027192001	1	971.504403	970.497126	1.7244	0.0016752	-0.94955	-0.00092249	0.77482	0.00075274	971.5032464931875	24.816	0.14479	24.816	24.767	24.912	0	282	91	1.4517976	0.053393483	1.4517976	294.88272	0	10.845062						183	7	3	NaN	NaN	NaN	0.010404	1	7614	7614		91.563	46.925	1	17715			21570	21	12465	12823	17079	17079					0.01069757452387421
QVDPSVDVL	9	Unmodified	_QVDPSVDVL_					0	0	0		ENSG00000120158|ENST00000381750|RCL1;AK3-RCL1|1|fusion	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5044027192001	1	971.504403	970.497126	1.3363	0.0012982	-0.21695	-0.00021077	1.1194	0.0010875	971.5042026885106	24.815	0.12062	24.803	24.755	24.875	-0.012394	279	70	1.4535767	0.04092419	1.4520572	295.24408	0	8.312347						131	6	2	NaN	NaN	NaN	0.04743	1	7475	7475		48.002	21.887	1	15220			21571	21	12465	12823	17080	17080					0.01069757452387421
QVDSEEPVF	9	Unmodified	_QVDSEEPVF_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.4785818992	1	1049.47858	1048.47131	2.364	0.002481	1.3184	0.0013836	3.6824	0.0038646	1049.4792761968902	22.863	0.096521	22.863	22.814	22.911	0	234	58	1.4802408	0.033745885	1.4802408	300.3468	0	6.8471985						115	5	2	NaN	NaN	NaN	0.0028258	1	10558	10558		108.53	71.229	1	10036			21572	2131	12466	12824	17081	17081					-0.05099136789885961
QVDSEEPVF	9	Unmodified	_QVDSEEPVF_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.4785818992	1	1049.47858	1048.47131	1.7987	0.0018877	-0.019078	-2.0022E-05	1.7796	0.0018676	1049.4780218249794	22.862	0.1205	22.848	22.8	22.921	-0.01354	231	49	1.4820169	0.028416157	1.4804975	300.70718	0	5.765747						106	6	2	NaN	NaN	NaN	0.024221	1	10340	10340		66.656	40.541	1	8178.4			21573	2131	12466	12824	17082	17082					-0.05099136789885961
QVDVGSYVL	9	Unmodified	_QVDVGSYVL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	979.5094880971002	1	979.509488	978.502212	2.0912	0.0020484	0.069252	6.7833E-05	2.1605	0.0021162	979.5092440191997	26.505	0.24133	26.505	26.456	26.698	0	258	70	1.4660252	0.0408808	1.4660252	297.7385	0	8.302551						321	11	4	NaN	NaN	NaN	3.9799E-05	1	7844	7844		126.58	53.446	1	55977			21574	408	12467	12825	17083	17083					0.012100613150096251
QVDVGSYVL	9	Unmodified	_QVDVGSYVL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	979.5094880971002	1	979.509488	978.502212	1.7239	0.0016886	1.2195	0.0011945	2.9434	0.0028831	979.5097279421325	26.504	0.21716	26.494	26.47	26.687	-0.010645	255	103	1.4678029	0.06046772	1.4662834	298.0995	0	12.280548						287	10	4	NaN	NaN	NaN	0.021751	1	7682	7682		69.782	8.511	1	58228			21575	408	12467	12825	17084	17084					0.012100613150096251
QVEIGEEI	8	Unmodified	_QVEIGEEI_					0	0	0			REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4622035535	1	916.462204	915.454927	1.9321	0.0017707	-0.78746	-0.00072168	1.1446	0.001049	916.4612671552843	25.371	0.096533	25.371	25.346	25.443	0	369	52	1.4001206	0.030338526	1.4001206	284.62558	0	6.167389						107	5	2	NaN	NaN	NaN	0.50906	1	6328	6328		30.61	4.4952	1	10500	+		21576	13619	12468	12826	17085	17085					-0.006182179560028089
QVEPFWMKL	9	Unmodified	_QVEPFWMKL_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3073522346501	2	589.307352	1176.60015	1.572	0.00092639	-10.937	-0.0064452	-9.3649	-0.0055188	589.8034506674617	17.282	0.11997	17.268	17.22	17.34	-0.013567	1209	55	0.892844	0.033100247	0.8913246	361.80685	0	13.413208						135	6	3	NaN	NaN	NaN	0.42817	1	15134	15134		12.57	0.83085	1	10882	+		21577	9279	12469	12827	17086	17086					0.018915466393536917
QVEVYKIQ	8	Unmodified	_QVEVYKIQ_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.78202455365005	2	503.782025	1005.5495	1.7766	0.00089503	-3.137	-0.0015804	-1.3604	-0.00068534	503.78082949615987	18.002	0.19195	17.988	17.916	18.108	-0.013786	1311	46	0.83019954	0.027683675	0.8286801	337.08377	0	11.240295						170	9	3	NaN	NaN	NaN	0.69898	1	8643	8643		19.118	1.3193	1	18311			21578	2981	12470	12828	17087	17087					0.04694340586001999
QVFEDNQLN	9	Unmodified	_QVFEDNQLN_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7592777388501	2	553.759278	1105.504	1.5699	0.00086936	7.454	0.0041277	9.024	0.0049971	553.7640197740951	26.408	0.12066	26.397	26.373	26.493	-0.011137	1215	43	0.8891654	0.025755763	0.88764596	360.5845	0	10.444763						109	6	3	NaN	NaN	NaN	0.61852	1	12722	12722		4.7291	0.31598	1	8420			21579	2762	12471	12829	17088	17088					-0.04452929667036187
QVFTKNQRI	9	Unmodified	_QVFTKNQRI_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3249222111001	2	567.324922	1132.63529	1.268	0.00071934	6.1127	0.0034679	7.3806	0.0041872	567.8299452117942	31.235	0.21717	31.235	31.139	31.356	0	1131	136	0.94059354	0.082425416	0.94059354	381.32773	0	33.41623						657	10	4	NaN	NaN	NaN	0.67989	1	14205	14205		0.92586	0.12598	1	164150			21580	1802	12472	12830	17089	17089					0.07427925491515452
QVFTKNQRI	9	Unmodified						0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.324922	1132.63529	1.237	0.0007018	6.5183	0.003698	7.7553	0.0043998	567.3283131040255	31.21	0.16893	31.205	31.133	31.302	-0.0050716	1128	151	0.9424274	0.091588795	0.94090796	382.0712		37.131195	-0.015129	0.0001585	0.00015721	NaN	0.92586	622	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218690			21581	1802	12472	12830							0.07427925491515452
QVGAAPAP	8	Unmodified	_QVGAAPAP_					0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3831653715	1	710.383165	709.375889	1.2452	0.0008846	5.9485	0.0042257	7.1937	0.0051103	710.3869422768634	27.688	0.19303	27.688	27.639	27.833	0	621	91	1.2495319	0.054046392	1.2495319	255.10335	0	11.034042						292	9	3	NaN	NaN	NaN	0.79379	1	3416	3416		10.052	3.2576	1	46626	+		21582	8570	12473	12831	17090	17090					0.009575996003718501
QVGAAPAP	8	Unmodified						0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	710.383165	709.375889	1.2452	0.0008846	5.9485	0.0042257	7.1937	0.0051103	710.3869422768634	27.688	0.19303	27.688	27.639	27.833	0	621	91	1.2495319	0.054046392	1.2495319	255.10335		11.034042	0.0051727	0.00011865	-0.00014062	NaN	10.052	292	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46626	+		21583	8570	12473	12831							0.009575996003718501
QVGAAPAP	8	Unmodified						0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.383165	709.375889	0.85646	0.00060841	5.6639	0.0040235	6.5203	0.0046319	710.3875392174602	27.687	0.1689	27.677	27.629	27.798	-0.009552	618	115	1.2513325	0.068488	1.2498131	255.47098		13.982437	-0.0051727	-8.3534E-05	0.00014062	NaN	10.052	282	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46941	+		21584	8570	12473	12831							0.009575996003718501
QVGKHSAG	8	Unmodified	_QVGKHSAG_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|92|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|147|3|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4107771055001	1	783.410777	782.403501	2.0745	0.0016252	-8.7807	-0.0068789	-6.7062	-0.0052537	783.4042194089121	30.222	0.16892	30.222	30.173	30.342	0	489	100	1.3285799	0.05918169	1.3285799	270.76175	0	12.061096						409	8	4	NaN	NaN	NaN	0.77489	1	4526	4526		12.588	0	1	91830			21585	7851	12474	12832	17091	17091					0.0035950286061279257
QVGLPEVTL	9	Unmodified	_QVGLPEVTL_					0	0	0		ENST00000475987.1_1_3:184944632-184971810:-|nuORF;EHHADH|p.L565Tfs*8|1|0.16|ENSG00000113790|chr3:185192692-185192705|CCTAATTCACAGAG/-|frameshift_variant;nc|ENSG00000113790|Q08426-2|EHHADH;ENSG00000113790|ENST00000231887|EHHADH	ENST00000475987.1_1_3:184944632-184971810:-|nuORF	ENST00000475987.1_1_3:184944632-184971810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5458736034001	1	955.545874	954.538597	1.8005	0.0017204	-0.14556	-0.00013909	1.6549	0.0015813	955.546460244661	26.915	0.31413	26.915	26.77	27.084	0	294	187	1.4446791	0.11045253	1.4446791	293.50552	0	22.43988						1271	14	5	NaN	NaN	NaN	0.026295	1	7204	7204		63.958	2.7596	1	564450			21586	282	12475	12833	17092	17092					0.0595093821170849
QVGPEEKIAL	10	Unmodified	_QVGPEEKIAL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.3058637907001	2	542.305864	1082.59717	1.4822	0.00080382	-2.3818	-0.0012917	-0.8996	-0.00048786	542.3048387887942	20.309	0.14435	20.295	20.222	20.367	-0.014141	1248	46	0.8689189	0.027623832	0.86739945	352.46573	0	11.205231						160	7	3	NaN	NaN	NaN	0.013488	1	11793	11793		66.786	34.008	1	44011			21587	1148	12476	12834	17093	17093					0.05917994786182135
QVGPEEKIAL	10	Unmodified						0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.305864	1082.59717	1.55	0.00084057	-2.1238	-0.0011518	-0.57383	-0.00031119	542.3048166571917	20.285	0.14422	20.285	20.237	20.381	0	1245	49	0.87076044	0.029463828	0.87076044	353.21274		11.951599	-0.0048841	9.8323E-05	0.0016805	NaN	66.786	175	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44283			21588	1148	12476	12834							0.05917994786182135
QVGSGALF	8	Unmodified	_QVGSGALF_					0	0	0		ENST00000492521.1_1_1:33560248-33562547:+|nuORF	ENST00000492521.1_1_1:33560248-33562547:+|nuORF	ENST00000492521.1_1_1:33560248-33562547:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	778.4093801220001	1	778.40938	777.402104	2.2082	0.0017189	-0.45312	-0.00035271	1.7551	0.0013662	778.4092338921455	22.911	0.21675	22.911	22.863	23.079	0	543	79	1.296287	0.046705246	1.296287	264.20978	0	9.51947						349	10	3	NaN	NaN	NaN	0.39717	1	4460	4460		36.586	2.8882	1	64697			21589	7272	12477	12835	17094	17094					0.004498687718637484
QVHGPTAA	8	Unmodified	_QVHGPTAA_					0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.3998780681999	1	780.399878	779.392602	1.684	0.0013142	-10.67	-0.0083266	-8.9857	-0.0070124	780.3911909204247	36.374	0.24115	36.374	36.302	36.543	0	1200	58	0.89836043	0.034933507	0.89836043	183.09613	0	7.1198425						282	11	3	NaN	NaN	NaN	0.84887	1	4477	4477		0.32989	0	1	63369	+		21590	13181	12478	12836	17095	17095					-0.005918995136880767
QVHGPTAA	8	Unmodified						0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	780.399878	779.392602	1.684	0.0013142	-10.67	-0.0083266	-8.9857	-0.0070124	780.3911909204247	36.374	0.24115	36.374	36.302	36.543	0	1200	58	0.89836043	0.034933507	0.89836043	183.09613		7.1198425	5.5241E-05	-0.00023624	0.00075972	NaN	0.32989	282	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63369	+		21591	13181	12478	12836							-0.005918995136880767
QVIEEIEEM	9	Unmodified	_QVIEEIEEM_					0	0	0		ENSG00000149557|ENST00000278919|FEZ1;ENST00000534022.1_1_11:125330178-125333397:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENSG00000149557|ENST00000278919|FEZ1	ENSG00000149557|ENST00000278919|FEZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1119.5238175322997	1	1119.52382	1118.51654	2.4572	0.0027509	-0.46445	-0.00051996	1.9927	0.0022309	1119.5227043883583	25.877	0.072395	25.877	25.853	25.926	0	96	73	1.5617468	0.04240334	1.5617468	316.62686	0	8.596802						108	4	2	NaN	NaN	NaN	0.041983	1	13606	13606		50.315	23.019	1	8056.9			21592	3685	12479	12837	17096	17096					-0.037976543190325174
QVIEEIEEM	9	Oxidation (M)	_QVIEEIEEM(Oxidation (M))_		QVIEEIEEM(1)		QVIEEIEEM(47)	0	0	1		ENSG00000149557|ENST00000278919|FEZ1;ENST00000534022.1_1_11:125330178-125333397:-|nuORF;ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENSG00000149557|ENST00000278919|FEZ1	ENSG00000149557|ENST00000278919|FEZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2630043104999	2	568.263004	1134.51146	1.5722	0.00089342	2.0155	0.0011454	3.5877	0.0020388	568.2640299130295	21.151	0.14454	21.151	21.127	21.272	0	1206	67	0.894683	0.040434003	0.894683	362.70786	0	16.39212						138	7	3	NaN	NaN	NaN	0.048656	1	14247	14247		47.482	24.147	1	25000			21593	3685	12479	12838	17097	17097		412			-0.05041958181664086
QVIGLVTAL	9	Unmodified	_QVIGLVTAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF;TNS4|p.S699L|1|0.11|ENSG00000131746|chr17:40477640-40477640|G/A|missense_variant	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	913.5716944233999	1	913.571694	912.564418	1.9426	0.0017747	0.098628	9.0104E-05	2.0413	0.0018648	913.5715385475635	30.222	0.12065	30.222	30.173	30.294	0	306	79	1.4375578	0.046308875	1.4375578	292.24976	0	9.414429						189	6	3	NaN	NaN	NaN	0.021105	1	6289	6289		70.6	6.6415	1	34922			21594	2723	12480	12839	17098	17098					0.10463832453979194
QVIGLVTAL	9	Unmodified	_QVIGLVTAL_					0	0	0		ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF;TNS4|p.S699L|1|0.11|ENSG00000131746|chr17:40477640-40477640|G/A|missense_variant	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.5716944233999	1	913.571694	912.564418	1.2451	0.0011375	-0.99725	-0.00091106	0.24786	0.00022644	913.57111405773	30.221	0.096542	30.214	30.166	30.263	-0.0064106	306	70	1.4375578	0.04096341	1.4360384	292.24976	0	8.327667						183	5	4	NaN	NaN	NaN	0.016254	1	6164	6164		76.739	18.14	1	29724			21595	2723	12480	12839	17099	17099					0.10463832453979194
QVIHTNIWAW	10	Unmodified	_QVIHTNIWAW_					0	0	0			REV__SLC10A4|p.P227H|1|0.34|ENSG00000145248|chr4:48485021-48485021|C/A|missense_variant	REV__SLC10A4|p.P227H|1|0.34|ENSG00000145248|chr4:48485021-48485021|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3327472432001	2	634.332747	1266.65094	1.1412	0.00072392	1.7772	0.0011273	2.9184	0.0018512	635.338043972912	33.045	0.096561	33.045	32.997	33.094	0	1131	43	0.94059354	0.025672436	0.94059354	380.84216	0	10.394684						91	5	3	NaN	NaN	NaN	0.77144	1	18159	18159		2.5994	0.89725	1	5117.8	+		21596	13313	12481	12840	17100	17100					0.028282120085577844
QVIPEEAVL	9	Unmodified	_QVIPEEAVL_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5564382896999	1	997.556438	996.549162	2.0737	0.0020686	-1.7457	-0.0017415	0.32796	0.00032716	997.5555252268674	26.287	0.048239	26.276	26.252	26.3	-0.011137	255	70	1.4678029	0.04088509	1.4662834	298.02454	0	8.301361						82	3	2	NaN	NaN	NaN	0.074859	1	8281	8281		39.459	0.54089	1	8135.1			21597	5717	12482	12841	17101	17101					0.05074920866127286
QVIPEEAVL	9	Unmodified						0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	997.556438	996.549162	2.3259	0.0023203	-4.3679	-0.0043573	-2.042	-0.002037	997.5523944066503	26.288	0.024136	26.288	26.263	26.288	0	246	67	1.4731345	0.039105415	1.4731345	299.1071		7.9400024	0.005678	-0.0015462	0.0034256	NaN	39.459	76	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10236			21598	5717	12482	12841							0.05074920866127286
QVLGAGHG	8	Unmodified	_QVLGAGHG_					0	0	0		ENST00000390665.8_1_X:306258-308059:-|nuORF	ENST00000390665.8_1_X:306258-308059:-|nuORF	ENST00000390665.8_1_X:306258-308059:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3893133819001	1	738.389313	737.382037	0.68294	0.00050427	-10.504	-0.0077561	-9.8212	-0.0072519	738.3803084554094	31.452	0.096527	31.452	31.428	31.525	0	534	127	1.3016734	0.07550335	1.3016734	265.55734	0	15.4036255						243	5	2	NaN	NaN	NaN	0.84207	1	3875	3875		3.5732	1.9029	1	18722			21599	6750	12483	12842	17102	17102					0.002841178319044957
QVLGAGHG	8	Unmodified						0	0	0		ENST00000390665.8_1_X:306258-308059:-|nuORF	ENST00000390665.8_1_X:306258-308059:-|nuORF	ENST00000390665.8_1_X:306258-308059:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	738.389313	737.382037	0.89846	0.00066342	-7.8502	-0.0057965	-6.9518	-0.0051331	738.3820993235234	31.451	0.12069	31.447	31.423	31.544	-0.0044155	534	139	1.3016734	0.08268535	1.300154	265.55734		16.86882	-0.0027411	0.00081811	-0.00075972	NaN	3.5732	277	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20215			21600	6750	12483	12842							0.002841178319044957
QVLGQAAH	8	Unmodified	_QVLGQAAH_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4420772338999	1	823.442077	822.434801	1.3843	0.0011399	-5.756	-0.0047397	-4.3717	-0.0035998	823.4374504830357	32.61	0.33781	32.607	32.558	32.896	-0.0031052	450	154	1.3518641	0.09136522	1.3503447	275.27573	0	18.604431						732	15	4	NaN	NaN	NaN	0.80071	1	4936	4936		9.1232	1.533	1	213250	+		21601	9185	12484	12843	17103	17103					0.016480758946954666
QVLLHYYMGLE	11	Unmodified	_QVLLHYYMGLE_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3472056766499	2	683.347206	1364.67986	2.6687	0.0018236	-3.9825	-0.0027214	-1.3138	-0.00089779	683.3454551244556	25.467	0.048279	25.455	25.431	25.479	-0.012011	1059	31	0.98455137	0.018294036	0.9830319	398.33154	0	7.401428						41	3	2	NaN	NaN	NaN	0.76654	1	18822	18822		2.5994	0.70933	1	3365.3	+		21602	10650	12485	12844	17104	17104					0.012105685226515561
QVNHFSQLI	9	Unmodified	_QVNHFSQLI_					0	0	0			REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant	REV__LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2905480775001	2	543.290548	1084.56654	1.7109	0.00092952	-10.533	-0.0057225	-8.8222	-0.004793	543.2852523462675	28.291	0.193	28.291	28.219	28.412	0	1272	88	0.854179	0.053417623	0.854179	346.47882	0	21.667664						327	9	3	NaN	NaN	NaN	0.12328	1	12169	12169		32.453	3.5572	1	37877	+		21603	10522	12486	12845	17105	17105					0.027642611918281546
QVPEPLLQL	9	Unmodified	_QVPEPLLQL_					0	0	0		ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8054996499501	2	518.8055	1035.59645	0.83641	0.00043393	1.254	0.0006506	2.0904	0.0010845	518.8064624821021	31.332	0.19308	31.332	31.284	31.477	0	1284	40	0.8468043	0.023971736	0.8468043	343.69104	0	9.72934						147	9	2	NaN	NaN	NaN	0.33202	1	10029	10029		16.858	2.8167	1	17502			21604	7618	12487	12846	17106	17106					0.08007200137149084
QVPNESFFNFF	11	Unmodified	_QVPNESFFNFF_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3195024822	2	688.319502	1374.62445	1.7258	0.0011879	-2.5099	-0.0017276	-0.7841	-0.00053971	688.3178071206981	36.133	0.21711	36.133	36.036	36.254	0	1089	55	0.96624947	0.03296125	0.96624947	390.89853	0	13.334564						272	10	2	NaN	NaN	NaN	0.18149	1	19847	19847		41.839	20.067	1	55289			21605	5928	12488	12847	17107	17107					-0.047875216734382775
QVPNESFFNFF	11	Unmodified	_QVPNESFFNFF_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3195024822	2	688.319502	1374.62445	1.4111	0.0009713	-0.80727	-0.00055566	0.60385	0.00041564	688.318906939137	36.107	0.24099	36.108	36.036	36.277	0.0011024	1089	58	0.96624947	0.03478682	0.96473	390.89853	0	14.07309						390	11	4	NaN	NaN	NaN	0.53805	1	18913	18913		28.495	14.547	1	51239			21606	5928	12488	12847	17108	17108					-0.047875216734382775
QVPPGPSS	8	Unmodified	_QVPPGPSS_					0	0	0			REV__ENST00000524751.5_1_11:126143220-126144854:+|nuORF	REV__ENST00000524751.5_1_11:126143220-126144854:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3886446799	1	768.388645	767.381368	1.6002	0.0012296	1.3936	0.0010708	2.9938	0.0023004	768.3901494997168	28.943	0.096571	28.943	28.918	29.015	0	555	43	1.2891023	0.025143623	1.2891023	262.8049	0	5.125946						70	5	2	NaN	NaN	NaN	0.84207	1	4322	4322		3.5732	0	1	4672	+		21607	12616	12489	12848	17109	17109					-0.011627216078068159
QVQARQLSS	9	Unmodified	_QVQARQLSS_					0	0	0			REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.77780484300007	2	508.777805	1015.54106	0.93237	0.00047437	-8.745	-0.0044493	-7.8127	-0.0039749	508.77429424643435	31.379	0.072361	31.374	31.326	31.398	-0.0050716	1299	52	0.8375814	0.03137821	0.83606195	340.03586	0	12.7387085						93	4	3	NaN	NaN	NaN	0.47587	1	9027	9027		10.605	4.3548	1	6254.1	+		21608	10066	12490	12849	17110	17110					0.03390786669388035
QVQARQLSS	9	Unmodified						0	0	0			REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	REV__nc|ENSG00000153066|Q6PKC3|TXNDC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.777805	1015.54106	0.93237	0.00047437	-8.745	-0.0044493	-7.8127	-0.0039749	508.77429424643435	31.379	0.072361	31.374	31.326	31.398	-0.0050716	1299	52	0.8375814	0.03137821	0.83606195	340.03586		12.7387085	-0.0030618	0.00032573	0.0010856	NaN	10.605	93	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6254.1	+		21609	10066	12490	12849							0.03390786669388035
QVQDEDTYLE	10	Unmodified	_QVQDEDTYLE_					0	0	0		ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant	ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.85070209143333	3	413.850702	1238.53028	1.2563	0.00051993	0.5611	0.00023221	1.8174	0.00075215	413.85078363064264	34.516	0.096481	34.515	34.467	34.563	-0.0006485	1467	46	0.7339432	0.027837038	0.7324238	445.86066	0	16.910645						71	5	2	NaN	NaN	NaN	0.64158	1	16749	16749		9.5705	3.8733	1	6066.9			21610	29	12491	12850	17111	17111					-0.07944705286217868
QVQQEVIP	8	Unmodified	_QVQQEVIP_					0	0	0		ENST00000492598.1_1_1:17302954-17303350:-|nuORF;ENST00000478684.5_1_1:17302954-17304768:-|nuORF;ENST00000490075.5_1_1:17301417-17303350:-|nuORF;nc|ENSG00000117122|P55001-3|MFAP2;nc|ENSG00000117122|P55001-2|MFAP2;ENSG00000117122|ENST00000375535|MFAP2	ENST00000492598.1_1_1:17302954-17303350:-|nuORF	ENST00000492598.1_1_1:17302954-17303350:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.5098224481	1	940.509822	939.502546	1.07	0.0010064	3.2033	0.0030127	4.2733	0.0040191	940.5131102173807	32.104	0.096535	32.104	32.08	32.177	0	324	43	1.42687	0.024946213	1.42687	289.95334	0	5.069275						83	5	2	NaN	NaN	NaN	0.84455	1	6814	6814		2.7852	0	1	6510.5			21611	2128	12492	12851	17112	17112					0.030374810348462233
QVRFYEGVVEL	11	Unmodified	_QVRFYEGVVEL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.85625212925	2	669.856252	1337.69795	1.7821	0.0011937	2.5002	0.0016748	4.2823	0.0028685	669.8579764453982	23.417	0.096487	23.417	23.369	23.465	0	1068	55	0.97906286	0.032936394	0.97906286	396.19107	0	13.328186						157	5	3	NaN	NaN	NaN	0.69801	1	19374	19374		7.5876	0.72439	1	18813			21612	1922	12493	12852	17113	17113					0.042610267690406545
QVRQYFPET	9	Unmodified	_QVRQYFPET_					0	0	0		nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2932877316999	2	584.293288	1166.57202	2.3244	0.0013581	-9.4513	-0.0055224	-7.127	-0.0041642	584.2876256528361	26.505	0.19306	26.505	26.456	26.65	0	990	178	1.0265712	0.107685566	1.0265712	416.03848	0	43.641724						802	9	4	NaN	NaN	NaN	0.67989	1	15358	15358		0.92586	0.32864	1	146210			21613	4491	12494	12853	17114	17114					-0.00460060016416719
QVSASPLPSL	10	Unmodified	_QVSASPLPSL_					0	0	0		ENST00000483657.1_1_2:97755791-97757446:-|nuORF	ENST00000483657.1_1_2:97755791-97757446:-|nuORF	ENST00000483657.1_1_2:97755791-97757446:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5516872628001	1	998.551687	997.544411	2.4651	0.0024615	-4.9473	-0.0049401	-2.4822	-0.0024786	998.5490162880378	26.119	0.21722	26.119	26.022	26.239	0	240	91	1.4766881	0.05329156	1.4766881	299.82452	0	10.820251						393	10	3	NaN	NaN	NaN	0.60686	1	8486	8486		14.425	3.8201	1	64604			21614	7221	12495	12854	17115	17115					0.04554036723379795
QVSDLISVL	9	Unmodified	_QVSDLISVL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;nc|ENSG00000108654|P17844-2|DDX5	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5564382897002	1	973.556438	972.549162	1.1395	0.0011094	1.655	0.0016112	2.7944	0.0027206	973.5574272229491	31.332	0.19308	31.332	31.284	31.477	0	228	133	1.4837929	0.07812786	1.4837929	301.37256	0	15.86853						416	9	3	NaN	NaN	NaN	0.017076	1	7688	7688		75.698	11.74	1	72837			21615	1688	12496	12855	17116	17116					0.06178920866148019
QVSDLISVL	9	Unmodified	_QVSDLISVL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF;nc|ENSG00000108654|P17844-2|DDX5	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.5564382897002	1	973.556438	972.549162	1.1274	0.0010976	-0.19419	-0.00018906	0.93318	0.00090851	973.5559849303321	31.331	0.19304	31.326	31.277	31.47	-0.0050716	222	85	1.4873441	0.04971242	1.4858247	302.09387	0	10.097076						346	9	3	NaN	NaN	NaN	0.021751	1	7538	7538		69.782	11.547	1	69275			21616	1688	12496	12855	17117	17117					0.06178920866148019
QVSVSLLREW	10	Unmodified	_QVSVSLLREW_					0	0	0			REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.22766709610005	3	406.227667	1215.66117	1.4281	0.00058013	-1.0802	-0.0004388	0.34792	0.00014133	406.2272595757668	16.59	0.071978	16.59	16.542	16.614	0	1482	28	0.72465914	0.01671493	0.72465914	440.31186	0	10.156189						60	4	2	NaN	NaN	NaN	0.75017	1	16883	16883		4.6175	0.68935	1	7232.7	+		21617	11624	12497	12856	17118	17118					0.061967749431460106
QVVDGECC	8	Unmodified	_QVVDGECC_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.3226153041	1	852.322615	851.315339	-0.22163	-0.0001889	-8.7904	-0.0074922	-9.012	-0.0076811	852.3154880856748	45.668	0.24008	45.679	45.607	45.848	0.011349	600	67	1.2621325	0.039578915	1.2606131	256.8607	0	8.05484						302	11	2	NaN	NaN	NaN	0.84455	1	5266	5266		2.7852	1.5433	1	27518	+	+	21618	8291	12498	12857	17119	17119					-0.11626621836524009
QVVDGECC	8	Unmodified						0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	852.322615	851.315339	1.6867	0.0014376	-11.539	-0.0098352	-9.8525	-0.0083975	852.313034616489	45.694	0.26406	45.694	45.622	45.886	0	600	70	1.2621325	0.041384578	1.2621325	256.8607		8.422302	0.0073944	-0.0012606	0.00075972	NaN	2.7852	395	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30225	+	+	21619	8291	12498	12857							-0.11626621836524009
QVVDGECC	8	Unmodified						0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	852.322615	851.315339	-0.22163	-0.0001889	-8.7904	-0.0074922	-9.012	-0.0076811	852.3154880856748	45.668	0.24008	45.679	45.607	45.848	0.011349	600	67	1.2621325	0.039578915	1.2606131	256.8607		8.05484	-0.0073944	0.0010823	-0.00075972	NaN	2.7852	302	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27518	+	+	21620	8291	12498	12857							-0.11626621836524009
QVVEEDPEL	9	Unmodified	_QVVEEDPEL_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5047966496998	1	1057.5048	1056.49752	1.7805	0.0018829	-1.5548	-0.0016442	0.22565	0.00023862	1057.503633450194	21.2	0.096359	21.2	21.175	21.272	0	207	55	1.496219	0.031944394	1.496219	303.55887	0	6.481018						146	5	3	NaN	NaN	NaN	0.01966	1	10931	10931		72.428	16.837	1	13683			21621	419	12499	12858	17120	17120					-0.028468676184274955
QVVEEDPEL	9	Unmodified	_QVVEEDPEL_					0	0	0		nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000498461.1_1_10:45938876-45939636:+|nuORF	nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-2|ALOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5047966496998	1	1057.5048	1056.49752	1.4837	0.0015691	-0.29231	-0.00030912	1.1914	0.0012599	1057.5061966019096	21.2	0.072292	21.186	21.162	21.234	-0.014004	207	76	1.496219	0.044374347	1.4946996	303.55887	0	9.002838						142	4	3	NaN	NaN	NaN	3.7692E-08	1	10707	10707		140.15	42.297	1	13961			21622	419	12499	12858	17121	17121					-0.028468676184274955
QVVTIIVL	8	Unmodified	_QVVTIIVL_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.5815308282	1	884.581531	883.574254	1.3552	0.0011988	-0.67601	-0.00059798	0.67919	0.0006008	884.5809950683973	34.879	0.096443	34.879	34.855	34.951	0	306	61	1.4375578	0.03561461	1.4375578	292.3922	0	7.2438354						164	5	3	NaN	NaN	NaN	0.098732	1	5851	5851		64.55	0	1	21753	+		21623	11091	12500	12859	17122	17122					0.12781020459362935
QWAELGRVPFL	11	Unmodified	_QWAELGRVPFL_					0	0	0			REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.36150468265	2	658.361505	1314.70846	0.53572	0.0003527	-5.7506	-0.003786	-5.2149	-0.0034333	658.3577098330111	38.348	0.096088	38.348	38.324	38.42	0	1257	28	0.86339295	0.016581416	0.86339295	349.44614	0	6.71109						62	5	2	NaN	NaN	NaN	0.76488	1	19030	19030		2.8895	0.96483	1	4251.7	+		21624	12607	12501	12860	17123	17123					0.06369054214110292
QWAELGRVPFL	11	Unmodified	_QWAELGRVPFL_					0	0	0			REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.36150468265	2	658.361505	1314.70846	0.54762	0.00036053	-3.8024	-0.0025034	-3.2548	-0.0021428	658.3595581168132	37.987	0.096104	37.987	37.939	38.035	0	1206	34	0.894683	0.020226836	0.894683	362.11035	0	8.186523						55	4	2	NaN	NaN	NaN	0.74794	1	19031	19031		4.3102	2.8047	1	8301.1	+		21625	12607	12501	12860	17124	17124					0.06369054214110292
QWAKECLER	9	Unmodified	_QWAKECLER_					0	0	0			REV__tr|U7SMA1|U7SMA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01929PE=4SV=1	REV__tr|U7SMA1|U7SMA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01929PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7873152843	2	581.787315	1161.56008	1.1432	0.00066512	6.6191	0.0038509	7.7624	0.004516	582.2916464102515	33.19	0.096531	33.19	33.142	33.238	0	1224	43	0.883646	0.025758564	0.883646	358.1332	0	10.439697						95	5	2	NaN	NaN	NaN	0.49672	1	15202	15202		9.746	0.13435	1	9604	+		21626	13433	12502	12861	17125	17125					-0.014240000312383927
QWAKECLER	9	Unmodified						0	0	0			REV__tr|U7SMA1|U7SMA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01929PE=4SV=1	REV__tr|U7SMA1|U7SMA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01929PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.787315	1161.56008	1.1432	0.00066512	6.6191	0.0038509	7.7624	0.004516	582.2916464102515	33.19	0.096531	33.19	33.142	33.238	0	1224	43	0.883646	0.025758564	0.883646	358.1332		10.439697	0	0	0	NaN	9.746	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9604	+		21627	13433	12502	12861							-0.014240000312383927
QWDLVENYL	9	Unmodified	_QWDLVENYL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.28767103755	2	590.287671	1178.56079	1.1313	0.00066778	-1.7959	-0.0010601	-0.66465	-0.00039234	590.2864873961345	31.959	0.24133	31.959	31.911	32.152	0	1176	55	0.9130621	0.03306806	0.9130621	369.99268	0	13.399933						182	11	2	NaN	NaN	NaN	0.10363	1	15778	15778		35.296	22.294	1	36365			21628	4973	12503	12862	17126	17126					-0.02134882110522085
QWDLVENYL	9	Unmodified	_QWDLVENYL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.28767103755	2	590.287671	1178.56079	0.43072	0.00025425	-1.1744	-0.00069324	-0.74369	-0.00043899	590.2867109139214	31.958	0.12065	31.954	31.906	32.027	-0.0037613	1173	67	0.91489893	0.040394723	0.9133795	370.73697	0	16.368835						147	6	2	NaN	NaN	NaN	0.23112	1	15199	15199		23.334	12.164	1	32892			21629	4973	12503	12862	17127	17127					-0.02134882110522085
QWDVDTIYL	9	Unmodified	_QWDVDTIYL_					0	0	0		nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-4|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	nc|ENSG00000079691|Q5VZK9-3|CARMIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1152.5571665712	1	1152.55717	1151.54989	2.1052	0.0024264	-0.23595	-0.00027195	1.8692	0.0021544	1152.5563108605998	31.67	0.072428	31.67	31.646	31.718	0	60	49	1.582944	0.028250933	1.582944	320.81207	0	5.7255554						80	4	2	NaN	NaN	NaN	0.2961	1	14858	14858		19.164	3.7009	1	5186.1			21630	898	12504	12863	17128	17128					-0.019822844848022214
QWEDLTPLTF	10	Unmodified	_QWEDLTPLTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.3086034449	2	625.308603	1248.60265	0.39134	0.00024471	-5.5864	-0.0034932	-5.1951	-0.0032485	625.3044330707611	33.43	0.14479	33.428	33.404	33.549	-0.0018501	1170	64	0.91673553	0.03854823	0.9152161	371.24005	0	15.610443						119	7	2	NaN	NaN	NaN	0.31086	1	16995	16995		27.296	14.727	1	9910			21631	779	12505	12864	17129	17129					-0.011703264220159326
QWEDLTPLTF	10	Unmodified						0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	625.308603	1248.60265	0.8504	0.00053176	-11.257	-0.0070391	-10.407	-0.0065074	625.804288435767	33.456	0.12067	33.456	33.383	33.504	0	1176	64	0.9130621	0.038552344	0.9130621	369.75247		15.612122	0.013673	-0.0034406	-0.001077	NaN	27.296	66	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5371.2			21632	779	12505	12864							-0.011703264220159326
QWENQQPS	8	Unmodified	_QWENQQPS_					0	0	0			REV__ERGIC2|p.K121N|1|0.1|ENSG00000087502|chr12:29361656-29361656|T/A|missense_variant	REV__ERGIC2|p.K121N|1|0.1|ENSG00000087502|chr12:29361656-29361656|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.72523795625	2	508.725238	1015.43592	1.8118	0.00092171	7.4461	0.003788	9.2579	0.0047097	508.72872502582675	15.294	0.09612	15.294	15.27	15.366	0	1338	31	0.81357855	0.018476725	0.81357855	330.29172	0	7.5010986						64	5	2	NaN	NaN	NaN	0.75561	1	9182	9182		15.175	2.1725	1	4480.5	+		21633	12990	12506	12865	17130	17130					-0.07117754527041598
QWFFSSYSTPF	11	Unmodified	_QWFFSSYSTPF_					0	0	0			REV__ENST00000586173.1_1_19:30099701-30099833:+|nuORF	REV__ENST00000586173.1_1_19:30099701-30099833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.81405296355	2	698.814053	1395.61355	1.0576	0.00073905	6.6949	0.0046785	7.7525	0.0054176	698.8193014448453	26.698	0.1453	26.698	26.65	26.795	0	1047	46	0.99186665	0.027430713	0.99186665	401.2019	0	11.0954895						160	7	4	NaN	NaN	NaN	0.64343	1	20023	20023		11.17	3.5827	1	13521	+		21634	12884	12507	12866	17131	17131					-0.06842924047714405
QWHTAIATYI	10	Unmodified	_QWHTAIATYI_					0	0	0		ENST00000554554.5_1_14:24031106-24031322:-|nuORF	ENST00000554554.5_1_14:24031106-24031322:-|nuORF	ENST00000554554.5_1_14:24031106-24031322:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3114804848501	2	602.31148	1202.60841	0.9778	0.00058894	2.0143	0.0012132	2.9921	0.0018022	602.3125982481536	28.532	0.41019	28.523	28.306	28.716	-0.0083485	1029	157	1.0028336	0.094955206	1.0013142	406.276	0	38.469025						1235	18	3	NaN	NaN	NaN	0.77928	1	15905	15905		0.69115	0.093923	1	135600			21635	7566	12508	12867	17132	17132					0.01520816880338316
QWHWPKCRHYF	11	Unmodified	_QWHWPKCRHYF_					0	0	0			REV__ENST00000398805.7_1_9:115142364-115166433:+|nuORF	REV__ENST00000398805.7_1_9:115142364-115166433:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	794.3749547964001	2	794.374955	1586.73536	1.7942	0.0014253	-0.29278	-0.00023258	1.5015	0.0011927	794.3752767306959	24.888	0.072409	24.888	24.888	24.96	0	999	46	1.0210962	0.027377605	1.0210962	412.5366	0	11.060913						129	4	3	NaN	NaN	NaN	0.76488	1	20733	20733		2.8895	0	1	16275	+		21636	12023	12509	12868	17133	17133					-0.034541604463356634
QWKKKHFRL	9	Unmodified	_QWKKKHFRL_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.8801989623001	2	635.880199	1269.74584	1.0614	0.00067494	-3.9928	-0.0025389	-2.9314	-0.001864	635.8785688984046	41.376	0.07225	41.384	41.312	41.384	0.0082588	1248	79	0.8689189	0.047852874	0.86739945	351.81216	0	19.374878						156	4	2	NaN	NaN	NaN	0.67989	1	17418	17418		0.92586	0	1	41460	+		21637	10760	12510	12869	17134	17134					0.1217619027040655
QWLEKQDW	8	Unmodified	_QWLEKQDW_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378001	2	566.774731	1131.53491	1.1817	0.00066978	-0.62102	-0.00035198	0.56073	0.00031781	567.2756115980568	29.256	0.024105	29.248	29.248	29.272	-0.0077229	1224	64	0.883646	0.038656652	0.88212657	358.24472	0	15.672028						91	2	3	NaN	NaN	NaN	0.83582	1	13683	13683		4.4131	0	1	7507.3			21638	2022	12511	12870	17135	17135					-0.025597315621325833
QWLEKQDW	8	Unmodified	_QWLEKQDW_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378001	2	566.774731	1131.53491	1.4228	0.00080638	2.5627	0.0014525	3.9855	0.0022589	567.278265227415	36.083	0.072266	36.084	36.036	36.108	0.0011024	1227	40	0.88180584	0.023925126	0.8802864	357.4987	0	9.6996155						68	4	2	NaN	NaN	NaN	0.83582	1	13692	13692		4.4131	0.44458	1	6131.2			21639	2022	12511	12870	17136	17136					-0.025597315621325833
QWLLRPLVL	9	Unmodified	_QWLLRPLVL_					0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.36077640115	2	569.360776	1136.707	0.89176	0.00050774	-1.6871	-0.00096054	-0.79529	-0.00045281	569.3599125432614	31.259	0.12062	31.259	31.211	31.332	0	1176	55	0.9130621	0.03305739	0.9130621	370.15024	0	13.401276						145	6	3	NaN	NaN	NaN	0.63698	1	14355	14355		3.9685	0	1	18168			21640	1156	12512	12871	17137	17137					0.14411464916020122
QWLLRPLVL	9	Unmodified						0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.360776	1136.707	0.7035	0.00040054	-2.1219	-0.0012081	-1.4184	-0.00080759	569.3597695091806	31.307	0.19304	31.302	31.253	31.446	-0.0050716	1176	64	0.9130621	0.03856069	0.91154265	370.15024		15.632294	0.021095	-0.00027614	-0.00075972	NaN	3.9685	172	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18583			21641	1156	12512	12871							0.14411464916020122
QWLRHLHAH	9	Unmodified	_QWLRHLHAH_					0	0	0		ENST00000457836.6_1_19:41928192-41928252:+|nuORF	ENST00000457836.6_1_19:41928192-41928252:+|nuORF	ENST00000457836.6_1_19:41928192-41928252:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.8844576383	3	399.884458	1196.63154	1.3087	0.00052334	-0.2907	-0.00011625	1.018	0.00040709	399.8843061978358	23.947	0.19298	23.947	23.923	24.116	0	1362	46	0.79879075	0.027737617	0.79879075	485.44165	0	16.85675						312	9	4	NaN	NaN	NaN	0.24994	1	16362	16362		14.425	0	1	77134			21642	7064	12513	12872	17138	17138					0.041093005082984746
QWLYLIYQVR	10	Unmodified	_QWLYLIYQVR_					0	0	0			REV__ENST00000486616.5_1_3:38042946-38043150:+|nuORF	REV__ENST00000486616.5_1_3:38042946-38043150:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.2590786748333	3	461.259079	1380.75541	0.57458	0.00026503	-0.55886	-0.00025778	0.015721	7.2514E-06	461.2587719280808	27.47	0.12067	27.46	27.436	27.557	-0.0095501	1389	43	0.7821392	0.025912344	0.78061974	474.59998	0	15.723511						125	6	2	NaN	NaN	NaN	0.63781	1	18967	18967		12.307	0.83957	1	39531	+		21643	9647	12514	12873	17139	17139					0.080259137652547
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3061981417	2	617.306198	1232.59784	1.0214	0.00063052	-6.7564	-0.0041708	-5.735	-0.0035402	617.3013195919599	27.519	0.1448	27.519	27.519	27.664	0	1152	64	0.92775106	0.03854406	0.92775106	375.75424	0	15.610962						135	7	2	NaN	NaN	NaN	0.71736	1	17335	17335		6.8632	1.4133	1	31584			21644	2057	12515	12874	17140	17140					-0.009151657741313102
QWPQPDKPMFF	11	Oxidation (M)	_QWPQPDKPM(Oxidation (M))FF_		QWPQPDKPM(1)FF		QWPQPDKPM(43)FF	0	0	1		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	718.8370051310999	2	718.837005	1435.65946	1.6564	0.0011907	-3.1788	-0.002285	-1.5224	-0.0010944	718.8342590980704	25.515	0.16884	25.515	25.467	25.636	0	1089	67	0.96624947	0.0402686	0.96624947	390.73303	0	16.283875						239	8	3	NaN	NaN	NaN	0.077819	1	20305	20305		42.779	25.921	1	19277			21645	317	12516	12875	17141	17141		28			-0.040946021371610186
QWPWQASLQF	10	Unmodified	_QWPWQASLQF_					0	0	0		ENST00000476848.5_1_21:43803140-43803371:-|nuORF;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3	ENST00000476848.5_1_21:43803140-43803371:-|nuORF	ENST00000476848.5_1_21:43803140-43803371:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8169300035	2	645.81693	1289.61931	1.4432	0.00093202	-1.2482	-0.00080611	0.19497	0.00012591	645.8156707768491	34.131	0.26541	34.131	34.035	34.3	0	1131	61	0.94059354	0.036674976	0.94059354	380.769	0	14.84668						346	12	4	NaN	NaN	NaN	0.12158	1	18587	18587		42.995	31.824	1	42269			21646	4046	12517	12876	17142	17142					-0.013917807453935893
QWPWQASLQF	10	Unmodified	_QWPWQASLQF_					0	0	0		ENST00000476848.5_1_21:43803140-43803371:-|nuORF;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-2|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3	ENST00000476848.5_1_21:43803140-43803371:-|nuORF	ENST00000476848.5_1_21:43803140-43803371:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8169300035	2	645.81693	1289.61931	1.4239	0.00091961	-2.1302	-0.0013757	-0.7063	-0.00045614	645.8152789804882	34.13	0.21728	34.129	34.032	34.249	-0.0012474	1128	61	0.9424274	0.036674976	0.94090796	381.51138	0	14.84668						377	10	4	NaN	NaN	NaN	0.12158	1	17758	17758		42.995	27.532	1	45559			21647	4046	12517	12876	17143	17143					-0.013917807453935893
QWSNQLLF	8	Unmodified	_QWSNQLLF_					0	0	0			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2665416649501	2	518.266542	1034.51853	1.0992	0.00056969	-7.5214	-0.0038981	-6.4222	-0.0033284	518.2625912704709	29.473	0.14479	29.466	29.369	29.514	-0.0070667	1293	133	0.84127116	0.08103436	0.8397517	341.45	0	32.88974						369	7	4	NaN	NaN	NaN	0.63138	1	9759	9759		23.334	2.8858	1	61139	+		21648	11117	12518	12877	17144	17144					0.002651872717478909
QWSPPWCCGSW	11	Unmodified	_QWSPPWCCGSW_					0	0	0			REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.7655255972	2	668.765526	1335.5165	1.2219	0.00081713	7.2142	0.0048246	8.4361	0.0056418	668.7712309443757	26.649	0.26541	26.639	26.47	26.735	-0.010645	1125	64	0.9442611	0.038506687	0.94274163	382.1144	0	15.582489						280	12	3	NaN	NaN	NaN	0.73455	1	18467	18467		5.1889	0	1	28925	+		21649	11906	12519	12878	17145	17145					-0.13783932800015464
QWSPPWCCGSW	11	Unmodified						0	0	0			REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	668.765526	1335.5165	1.5549	0.0010399	9.0921	0.0060805	10.647	0.0071204	668.7727416666021	26.65	0.1931	26.65	26.553	26.746	0	1125	61	0.9442611	0.03666711	0.9442611	382.1144		14.838104	0.005483	0.0013579	0.00075972	NaN	5.1889	214	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28067	+		21650	11906	12519	12878							-0.13783932800015464
QWSPPWCCGSW	11	Unmodified						0	0	0			REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	REV__ENST00000371989.7_1_9:136229431-136229686:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	668.765526	1335.5165	1.2219	0.00081713	7.2142	0.0048246	8.4361	0.0056418	668.7712309443757	26.649	0.26541	26.639	26.47	26.735	-0.010645	1125	64	0.9442611	0.038506687	0.94274163	382.1144		15.582489	-0.005483	-0.0011538	-0.00075972	NaN	5.1889	280	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28925	+		21651	11906	12519	12878							-0.13783932800015464
QWVRLLYR	8	Unmodified	_QWVRLLYR_					0	0	0		nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENSG00000142530|ENST00000600100|GARIN5A	nc|ENSG00000142530|Q6IPT2-2|GARIN5A	nc|ENSG00000142530|Q6IPT2-2|GARIN5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3325502779501	2	567.33255	1132.65055	1.1001	0.00062415	-6.7184	-0.0038115	-5.6182	-0.0031874	567.3284269290866	31.089	0.14484	31.084	30.964	31.109	-0.0050716	1128	67	0.9424274	0.040333807	0.94090796	382.0712	0	16.351776						254	7	4	NaN	NaN	NaN	0.84876	1	13752	13752		0.39566	0	1	65447			21652	3376	12520	12879	17146	17146					0.08952837079368692
QWVSAKLDRGV	11	Unmodified	_QWVSAKLDRGV_					0	0	0			REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.2349331209666	3	420.234933	1257.68297	1.919	0.00080642	-11.323	-0.0047583	-9.4041	-0.0039519	420.2303601852173	11.572	0.16803	11.572	11.524	11.692	0	1419	28	0.76361835	0.01667869	0.76361835	463.8102	0	10.130402						93	8	2	NaN	NaN	NaN	0.64873	1	17957	17957		10.822	2.3661	1	8402.2	+		21653	9711	12521	12880	17147	17147					0.0644357969167686
QWWPHYTVRNS	11	Unmodified	_QWWPHYTVRNS_					0	0	0		ENST00000380502.7_2_9:19102810-19102879:-|nuORF	ENST00000380502.7_2_9:19102810-19102879:-|nuORF	ENST00000380502.7_2_9:19102810-19102879:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.35474228305	2	737.354742	1472.69493	1.8869	0.0013913	-0.92041	-0.00067867	0.96646	0.00071263	737.3553043988347	25.926	0.12064	25.926	25.853	25.974	0	1032	46	1.0010062	0.027415931	1.0010062	404.69086	0	11.083832						144	6	3	NaN	NaN	NaN	0.76803	1	20484	20484		2.3381	0	1	10007			21654	6735	12522	12881	17148	17148					-0.022508035651298997
QYAAFKRWHF	10	Unmodified	_QYAAFKRWHF_					0	0	0		nc|ENSG00000112031|Q9UGC7-3|MTRF1L;nc|ENSG00000112031|Q9UGC7-2|MTRF1L;ENST00000504731.1_1_4:189659580-189660645:+|nuORF;ENSG00000112031|ENST00000367233|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	nc|ENSG00000112031|Q9UGC7-3|MTRF1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.89988480183325	3	451.899885	1352.67783	1.2914	0.00058359	-1.8521	-0.00083694	-0.56065	-0.00025336	451.89902336361985	19.876	0.16831	19.876	19.828	19.997	0	1443	67	0.7487872	0.04079449	0.7487872	454.45547	0	24.759064						192	8	2	NaN	NaN	NaN	0.5544	1	19576	19576		17.198	10.391	1	23585			21655	1847	12523	12882	17149	17149					0.0155932061970816
QYAHLEWLL	9	Unmodified	_QYAHLEWLL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.80857365515	2	586.808574	1171.60259	1.7389	0.0010204	-0.36984	-0.00021702	1.3691	0.00080339	586.8083450961703	29.329	0.19304	29.329	29.28	29.474	0	1164	67	0.9204082	0.040403485	0.9204082	372.9951	0	16.373505						364	9	5	NaN	NaN	NaN	0.048656	1	15546	15546		47.482	15.92	1	108370			21656	2229	12524	12883	17150	17150					0.023657183686509597
QYAHLEWLL	9	Unmodified	_QYAHLEWLL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.80857365515	2	586.808574	1171.60259	1.215	0.00071296	-0.067728	-3.9743E-05	1.1472	0.00067321	586.8081307817581	29.352	0.24129	29.344	29.296	29.537	-0.0077209	1161	70	0.9222442	0.04224229	0.92072475	373.73914	0	17.118683						405	11	4	NaN	NaN	NaN	0.019103	1	14998	14998		73.133	25.997	1	107720			21657	2229	12524	12883	17151	17151					0.023657183686509597
QYAKDIGFI	9	Unmodified	_QYAKDIGFI_					0	0	0		ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF	ENSG00000213741|ENST00000245458|RPS29	ENSG00000213741|ENST00000245458|RPS29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7820245536501	2	527.782025	1053.5495	1.7072	0.00090104	-1.0398	-0.00054879	0.66741	0.00035225	527.7809992328145	22.67	0.12064	22.67	22.645	22.766	0	1182	43	0.9093879	0.025722384	0.9093879	369.00922	0	10.437592						113	6	3	NaN	NaN	NaN	0.13602	1	10801	10801		30.61	7.2757	1	15226			21658	5969	12525	12884	17152	17152					0.024863405860060084
QYAKEVVDFSS	11	Unmodified	_QYAKEVVDFSS_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8089675856501	2	636.808968	1271.60338	2.0848	0.0013276	-4.9451	-0.0031491	-2.8602	-0.0018214	636.8070161690302	25.371	0.21717	25.371	25.25	25.467	0	1098	103	0.960755	0.06230718	0.960755	388.98914	0	25.226837						460	10	4	NaN	NaN	NaN	0.22541	1	18262	18262		28.296	5.178	1	61857			21659	1862	12526	12885	17153	17153					-0.021555317729507806
QYANNPRVVF	10	Unmodified	_QYANNPRVVF_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.31455449005	2	604.314554	1206.61456	1.4231	0.00085998	-8.1915	-0.0049502	-6.7684	-0.0040902	604.3094059396499	27.567	0.24133	27.567	27.519	27.76	0	1140	85	0.93509084	0.05139488	0.93509084	378.81726	0	20.82071						407	11	3	NaN	NaN	NaN	0.26902	1	16649	16649		29.598	10.435	1	97734			21660	4301	12527	12886	17154	17154					0.01951335111834851
QYANNPRVVF	10	Unmodified						0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.314554	1206.61456	0.83865	0.00050681	-8.1781	-0.0049421	-7.3394	-0.0044353	604.3099481925752	27.615	0.28958	27.605	27.508	27.798	-0.009552	1140	79	0.93509084	0.047718644	0.9335714	378.81726		19.33142	0.018952	9.9224E-06	-0.00075972	NaN	29.598	425	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98551			21661	4301	12527	12886							0.01951335111834851
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.28948544499997	2	511.289485	1020.56442	1.7439	0.00089163	-2.3029	-0.0011774	-0.55899	-0.00028581	511.28815757852874	34.855	0.19292	34.855	34.782	34.975	0	1272	148	0.854179	0.090218425	0.854179	346.7512	0	36.62387						638	9	4	NaN	NaN	NaN	0.023074	1	9398	9398		68.108	28.65	1	177490			21662	3007	12528	12887	17155	17155					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5716944234	1	1021.57169	1020.56442	2.2782	0.0023274	0.51126	0.00052229	2.7895	0.0028497	1021.573405773422	34.855	0.21701	34.855	34.782	34.999	0	174	181	1.5157272	0.106267214	1.5157272	307.65628	0	21.569702						613	10	4	NaN	NaN	NaN	0.014943	1	9401	9401		78.398	50.609	1	148710			21663	3007	12528	12887	17156	17156					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.28948544499997	2	511.289485	1020.56442	1.3397	0.000685	-1.7193	-0.00087906	-0.37955	-0.00019406	511.2884969630996	34.853	0.19286	34.853	34.78	34.973	-0.0006485	1269	136	0.8560222	0.08282679	0.85450274	347.49942	0	33.62326						646	9	5	NaN	NaN	NaN	0.12945	1	9211	9211		31.561	11.006	1	172360			21664	3007	12528	12887	17157	17157					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5716944234	1	1021.57169	1020.56442	1.8385	0.0018782	2.2837	0.0023329	4.1222	0.0042111	1021.576745074711	34.829	0.21698	34.828	34.756	34.973	-0.0006485	168	169	1.5192716	0.09913015	1.5177522	308.37573	0	20.121033						630	10	4	NaN	NaN	NaN	0.00080915	1	9213	9213		114.61	76.477	1	160250			21665	3007	12528	12887	17158	17158					0.0549583245398253
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4734369418001	1	1012.47344	1011.46616	1.9005	0.0019242	-0.92176	-0.00093325	0.97876	0.00099097	1012.4712518178361	20.333	0.12045	20.319	20.295	20.415	-0.014141	231	46	1.4820169	0.026641488	1.4804975	300.85	0	5.408264						106	6	2	NaN	NaN	NaN	0.052553	1	8851	8851		45.827	15.216	1	7295.9			21666	2325	12529	12888	17159	17159					-0.03911395861860001
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2665416649501	2	542.266542	1082.51853	2.2257	0.0012069	-0.57548	-0.00031207	1.6502	0.00089486	542.266112977543	26.094	0.19307	26.094	26.046	26.239	0	1257	82	0.86339295	0.04971218	0.86339295	350.22452	0	20.1651						468	9	5	NaN	NaN	NaN	0.014943	1	12085	12085		78.398	43.101	1	108480			21667	3268	12530	12889	17160	17160					-0.019428127282481
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2665416649501	2	542.266542	1082.51853	2.1538	0.0011679	0.1503	8.1504E-05	2.3041	0.0012494	542.2667644660588	26.118	0.24131	26.107	26.059	26.3	-0.011137	1260	88	0.8615505	0.053394496	0.8600311	349.47717	0	21.658813						523	11	4	NaN	NaN	NaN	0.024986	1	11773	11773		65.672	30.376	1	120880			21668	3268	12530	12889	17161	17161					-0.019428127282481
QYASRFVQL	9	Unmodified	_QYASRFVQL_					0	0	0		ENST00000507454.1_1_4:128812246-128813710:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2983731096001	2	556.298373	1110.58219	1.3835	0.00076962	-3.1302	-0.0017413	-1.7467	-0.00097168	556.2965850624796	21.392	0.19269	21.392	21.344	21.537	0	1230	85	0.8799654	0.05153382	0.8799654	356.8336	0	20.8974						251	9	2	NaN	NaN	NaN	0.048656	1	13311	13311		47.482	21.367	1	62162			21669	3386	12531	12890	17162	17162					0.03132547708855782
QYASRFVQL	9	Unmodified	_QYASRFVQL_					0	0	0		ENST00000507454.1_1_4:128812246-128813710:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	ENST00000507454.1_1_4:128812246-128813710:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2983731096001	2	556.298373	1110.58219	1.469	0.00081718	-3.6816	-0.0020481	-2.2126	-0.0012309	556.2965793037216	21.416	0.2166	21.402	21.306	21.523	-0.014004	1224	91	0.883646	0.05520886	0.88212657	358.32608	0	22.387665						386	10	4	NaN	NaN	NaN	0.03618	1	12935	12935		52.78	24.991	1	61517			21670	3386	12531	12890	17163	17163					0.03132547708855782
QYASYEFVQRL	11	Unmodified	_QYASYEFVQRL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.35133392685	2	702.351334	1402.68811	1.588	0.0011153	0.95727	0.00067234	2.5453	0.0017877	702.3528943937047	24.14	0.024149	24.127	24.103	24.127	-0.012749	1035	64	0.99917877	0.03839892	0.9976593	404.13962	0	15.5312805						51	2	2	NaN	NaN	NaN	0.6678	1	19139	19139		9.5705	6.0007	1	4102.4			21671	5678;276	12532	12891	17164	17164					0.00287838763642867
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.31656586275	2	562.316566	1122.61858	1.636	0.00091994	-2.9389	-0.0016526	-1.3029	-0.00073266	562.3154988265155	24.695	0.19299	24.695	24.623	24.816	0	1197	64	0.9001988	0.038610697	0.9001988	364.99042	0	15.654907						234	9	3	NaN	NaN	NaN	0.04947	1	13801	13801		47.136	26.687	1	45222			21672	5120	12533	12892	17165	17165					0.06217424605551969
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.31656586275	2	562.316566	1122.61858	1.2287	0.00069091	-1.4738	-0.00082874	-0.24511	-0.00013783	562.3161393559643	24.719	0.19296	24.707	24.634	24.827	-0.012392	1194	61	0.902037	0.0367741	0.9005176	365.73572	0	14.910248						183	9	3	NaN	NaN	NaN	0.030669	1	13384	13384		58.235	26.56	1	40183			21673	5120	12533	12892	17166	17166					0.06217424605551969
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4789162501997	1	1070.47892	1069.47164	2.0162	0.0021583	-0.7034	-0.00075297	1.3128	0.0014053	1070.4784073358771	22.718	0.16883	22.718	22.67	22.838	0	162	58	1.5228153	0.03366363	1.5228153	308.90652	0	6.828766						200	8	3	NaN	NaN	NaN	0.015029	1	11522	11522		78.289	38.831	1	21578			21674	2793	12534	12893	17167	17167					-0.06031717070072773
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7430963584	2	535.743096	1069.47164	2.2544	0.0012078	-0.85545	-0.0004583	1.399	0.00074949	535.7426084189503	22.718	0.16883	22.718	22.67	22.838	0	1287	76	0.8449601	0.04608953	0.8449601	342.80002	0	18.698486						346	8	4	NaN	NaN	NaN	0.0052656	1	11523	11523		102.05	64.744	1	93049			21675	2793	12534	12893	17168	17168					-0.06031717070072773
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4789162501997	1	1070.47892	1069.47164	1.203	0.0012878	-1.3253	-0.0014187	-0.12236	-0.00013099	1070.477186863091	22.717	0.16873	22.704	22.655	22.824	-0.01354	162	58	1.5228153	0.033660054	1.5212959	308.90652	0	6.8280334						193	8	3	NaN	NaN	NaN	0.0035249	1	11240	11240		106.42	58.943	1	21061			21676	2793	12534	12893	17169	17169					-0.06031717070072773
QYDEAVAQF	9	Unmodified	_QYDEAVAQF_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850552-61850903:-|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7430963584	2	535.743096	1069.47164	1.2172	0.00065212	0.028551	1.5296E-05	1.2458	0.00066742	535.7426120541414	22.717	0.1928	22.704	22.655	22.848	-0.01354	1290	73	0.84311575	0.044243515	0.8415963	342.05176	0	17.949585						405	9	5	NaN	NaN	NaN	0.01966	1	11242	11242		72.428	37.99	1	97811			21677	2793	12534	12893	17170	17170					-0.06031717070072773
QYDMTLTSF	9	Unmodified	_QYDMTLTSF_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4870380954999	1	1105.48704	1104.47976	1.9107	0.0021123	1.673	0.0018495	3.5837	0.0039618	1106.4924022339844	28.146	0.072382	28.146	28.122	28.194	0	72	55	1.5758814	0.031799078	1.5758814	319.54196	0	6.447937						76	4	2	NaN	NaN	NaN	0.021751	1	13016	13016		69.782	41.993	1	8638.9			21678	7973	12535	12894	17171	17171					-0.06829906144935194
QYDVPWLFY	9	Unmodified	_QYDVPWLFY_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1;PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.7951319289	2	615.795132	1229.57571	0.61354	0.00037782	3.229	0.0019884	3.8425	0.0023662	616.3004430492553	27.615	0.16894	27.605	27.508	27.677	-0.009552	1149	82	0.92958635	0.04956734	0.9280669	376.50775	0	20.07611						258	8	3	NaN	NaN	NaN	0.53206	1	16534	16534		8.2903	0.70269	1	42126			21679	3804	12536	12895	17172	17172					-0.029893902425328633
QYDVPWLFY	9	Unmodified						0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1;PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	615.795132	1229.57571	1.0044	0.00061848	1.4336	0.00088281	2.438	0.0015013	616.2983528029832	27.543	0.19306	27.543	27.495	27.688	0	1149	73	0.92958635	0.04405749	0.92958635	376.50775		17.844482	-0.031031	-0.00084689	0.00075972	NaN	8.2903	297	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46841			21680	3804	12536	12895							-0.029893902425328633
QYEIWRELF	9	Unmodified	_QYEIWRELF_					0	0	0		nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3245878601	2	642.324588	1282.63462	1.61	0.0010342	-3.3746	-0.0021676	-1.7646	-0.0011334	642.3223006531133	30.656	0.2655	30.656	30.584	30.849	0	1131	64	0.94059354	0.038506687	0.94059354	380.791	0	15.589081						501	12	5	NaN	NaN	NaN	0.032689	1	18470	18470		55.592	29.791	1	105290			21681	4596	12537	12896	17173	17173					0.0046108605179142614
QYEIWRELF	9	Unmodified	_QYEIWRELF_					0	0	0		nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	nc|ENSG00000168092|P68402-3|PAFAH1B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3245878601	2	642.324588	1282.63462	1.8496	0.001188	-2.8994	-0.0018623	-1.0498	-0.0006743	642.3226224283774	30.679	0.28959	30.673	30.601	30.891	-0.0057545	1128	64	0.9424274	0.038502514	0.94090796	381.53342	0	15.587402						440	13	3	NaN	NaN	NaN	0.010878	1	17649	17649		90.252	20.889	1	107610			21682	4596	12537	12896	17174	17174					0.0046108605179142614
QYEKLFHKW	9	Unmodified	_QYEKLFHKW_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.89250732663334	3	426.892507	1277.65569	1.701	0.00072613	-1.324	-0.0005652	0.37698	0.00016093	426.8924661089734	17.477	0.16782	17.477	17.405	17.573	0	1449	40	0.74507743	0.024117589	0.74507743	452.472	0	14.646179						212	8	4	NaN	NaN	NaN	0.46713	1	18373	18373		10.965	4.1575	1	29375			21683	2048	12538	12897	17175	17175					0.027970961513346992
QYEMLKRW	8	Unmodified	_QYEMLKRW_					0	0	0		ENST00000473343.5_1_1:6521496-6523040:-|nuORF;nc|ENSG00000215788|Q93038-8|TNFRSF25;nc|ENSG00000215788|Q93038-9|TNFRSF25;nc|ENSG00000215788|Q93038-10|TNFRSF25;ENSG00000215788|ENST00000356876|TNFRSF25;nc|ENSG00000215788|Q93038-2|TNFRSF25;nc|ENSG00000215788|Q93038-11|TNFRSF25	ENST00000473343.5_1_1:6521496-6523040:-|nuORF	ENST00000473343.5_1_1:6521496-6523040:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.2947761756501	2	577.294776	1152.575	1.4309	0.00082605	-9.5971	-0.0055404	-8.1662	-0.0047143	577.2898642026614	21.489	0.096428	21.475	21.45	21.547	-0.014006	1203	91	0.8965218	0.05516112	0.89500237	363.38495	0	22.358307						196	5	3	NaN	NaN	NaN	0.75561	1	14388	14388		15.175	4.0051	1	37074			21684	6002	12539	12898	17176	17176					0.00481491836785608
QYEPLFHML	9	Unmodified	_QYEPLFHML_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD;PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2891594815001	2	589.289159	1176.56377	1.6965	0.00099971	-4.2677	-0.0025149	-2.5713	-0.0015152	589.287362379889	28.339	0.14475	28.339	28.291	28.436	0	1089	43	0.96624947	0.025639296	0.96624947	391.55304	0	10.389801						161	7	4	NaN	NaN	NaN	0.042649	1	15696	15696		50.033	28.198	1	17287			21685	4798	12540	12899	17177	17177					-0.01745330257358546
QYEPLFHML	9	Unmodified	_QYEPLFHML_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD;PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2891594815001	2	589.289159	1176.56377	0.92772	0.00054669	-2.5751	-0.0015175	-1.6474	-0.0009708	589.2869792841614	28.363	0.16893	28.354	28.305	28.474	-0.0089779	1089	43	0.96624947	0.025636494	0.96473	391.55304	0	10.388702						155	8	3	NaN	NaN	NaN	0.12945	1	15126	15126		31.561	6.999	1	15912			21686	4798	12540	12899	17178	17178					-0.01745330257358546
QYEQVKQLF	9	Unmodified	_QYEQVKQLF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.81131330935	2	591.811313	1181.60807	1.5525	0.00091881	-3.7042	-0.0021922	-2.1516	-0.0012734	591.8097126003571	21.73	0.12037	21.73	21.705	21.826	0	1197	61	0.9001988	0.03675419	0.9001988	364.76932	0	14.893158						131	6	2	NaN	NaN	NaN	0.041983	1	15884	15884		50.315	27.229	1	18680			21687	2445	12541	12900	17179	17179					0.02453397160456916
QYEQVKQLF	9	Unmodified	_QYEQVKQLF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.81131330935	2	591.811313	1181.60807	1.0533	0.00062337	-7.4857	-0.0044301	-6.4323	-0.0038067	591.8058844787128	21.753	0.096308	21.74	21.691	21.788	-0.013895	1197	61	0.9001988	0.03675419	0.8986794	364.76932	0	14.893188						138	5	2	NaN	NaN	NaN	0.084037	1	15287	15287		38.131	17.682	1	24988			21688	2445	12541	12900	17180	17180					0.02453397160456916
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8004142720501	2	588.800414	1175.58628	2.2057	0.0012987	-1.7264	-0.0010165	0.47937	0.00028225	588.7991912568059	23.706	0.14459	23.706	23.658	23.803	0	1173	64	0.91489893	0.038573205	0.91489893	370.74783	0	15.631165						380	7	4	NaN	NaN	NaN	0.00016172	1	15665	15665		119.15	79.692	1	361390			21689	2559	12542	12901	17181	17181					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.8004142720501	2	588.800414	1175.58628	2.0443	0.0012037	-2.4379	-0.0014355	-0.39361	-0.00023176	588.7991359605015	23.73	0.21686	23.717	23.645	23.861	-0.013048	1173	112	0.91489893	0.06791836	0.9133795	370.74783	0	27.522827						515	10	5	NaN	NaN	NaN	0.002766	1	15094	15094		108.71	76.259	1	404600			21690	2559	12542	12901	17182	17182					0.005505924119233896
QYFAKTTILIC	11	Unmodified	_QYFAKTTILIC_					0	0	0			REV__ENST00000588435.1_1_18:14106276-14132276:-|nuORF	REV__ENST00000588435.1_1_18:14106276-14132276:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8521238790502	2	650.852124	1299.68969	1.6981	0.0011052	-2.639	-0.0017176	-0.94091	-0.00061239	650.8512439966196	19.972	0.12038	19.958	19.885	20.006	-0.014141	1131	25	0.94059354	0.014671564	0.93907416	380.73776	0	5.938843						62	6	2	NaN	NaN	NaN	0.77378	1	17946	17946		1.3312	0	1	4609.3	+		21691	12901	12543	12902	17183	17183					0.05183756528072081
QYFDSRGMFI	10	Unmodified	_QYFDSRGMFI_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2949731409001	2	632.294973	1262.57539	1.9642	0.0012419	-3.7214	-0.002353	-1.7572	-0.0011111	632.2928174472271	26.408	0.16895	26.408	26.336	26.505	0	1134	52	0.9387595	0.031185508	0.9387595	380.11282	0	12.627319						254	8	4	NaN	NaN	NaN	0.19179	1	18044	18044		36.235	11.673	1	41524			21692	3733	12544	12903	17184	17184					-0.04539133234015935
QYFDSRGMFI	10	Unmodified	_QYFDSRGMFI_					0	0	0		ENSG00000151353|ENST00000281017|TMEM18;ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF	ENSG00000151353|ENST00000281017|TMEM18	ENSG00000151353|ENST00000281017|TMEM18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.2949731409001	2	632.294973	1262.57539	1.4544	0.00091964	-1.4016	-0.00088623	0.052839	3.341E-05	632.2932943024543	26.432	0.19304	26.421	26.3	26.493	-0.011137	1137	52	0.9369253	0.031185508	0.93540585	379.37012	0	12.627289						165	9	2	NaN	NaN	NaN	0.28195	1	17263	17263		28.495	3.9333	1	35366			21693	3733	12544	12903	17185	17185					-0.04539133234015935
QYFLVEFLL	9	Unmodified	_QYFLVEFLL_					0	0	0			REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3235252276	2	586.323525	1170.6325	1.5671	0.00091885	-4.9098	-0.0028787	-3.3426	-0.0019599	586.3199317193855	32.442	0.19302	32.442	32.394	32.587	0	1167	79	0.91857195	0.047770202	0.91857195	372.25455	0	19.35907						251	9	3	NaN	NaN	NaN	0.16171	1	15512	15512		27.789	14.786	1	45904	+		21694	10206	12545	12904	17186	17186					0.05400657313998636
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.78202455365	2	563.782025	1125.5495	2.301	0.0012973	-0.33829	-0.00019072	1.9627	0.0011066	563.7820518025833	22.838	0.19291	22.838	22.79	22.983	0	1212	124	0.8910048	0.075448096	0.8910048	361.25122	0	30.589844						493	9	3	NaN	NaN	NaN	0.017558	1	13902	13902		75.089	39.792	1	93678			21695	1064	12546	12905	17187	17187					-0.008256594140220841
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.78202455365	2	563.782025	1125.5495	1.5582	0.00087847	0.87357	0.0004925	2.4317	0.001371	563.7828446831102	22.886	0.241	22.872	22.752	22.993	-0.01354	1215	124	0.8891654	0.0754562	0.88764596	360.50546	0	30.59317						564	11	4	NaN	NaN	NaN	0.01966	1	13475	13475		72.428	44.64	1	95222			21696	1064	12546	12905	17188	17188					-0.008256594140220841
QYFTGNPLF	9	Unmodified	_QYFTGNPLF_					0	0	0		ENSG00000128713|ENST00000249504|HOXD11	ENSG00000128713|ENST00000249504|HOXD11	ENSG00000128713|ENST00000249504|HOXD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.5254725123	1	1086.52547	1085.5182	1.7739	0.0019274	-0.74958	-0.00081444	1.0244	0.001113	1086.5253555775002	29.57	0.26543	29.57	29.522	29.787	0	129	106	1.5422925	0.061900496	1.5422925	312.79858	0	12.554291						321	12	2	NaN	NaN	NaN	0.032689	1	12195	12195		55.592	32.257	1	59498			21697	2579	12547	12906	17189	17189					-0.021142324480933894
QYFTGNPLF	9	Unmodified	_QYFTGNPLF_					0	0	0		ENSG00000128713|ENST00000249504|HOXD11	ENSG00000128713|ENST00000249504|HOXD11	ENSG00000128713|ENST00000249504|HOXD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.5254725123	1	1086.52547	1085.5182	1.0677	0.00116	-0.21669	-0.00023544	0.85096	0.00092459	1086.5256427495467	29.569	0.24129	29.562	29.514	29.755	-0.0070667	126	97	1.544062	0.05659175	1.5425426	313.15747	0	11.4776						536	11	4	NaN	NaN	NaN	0.011693	1	11885	11885		87.778	57.168	1	72719			21698	2579	12547	12906	17190	17190					-0.021142324480933894
QYFVSFLPW	9	Unmodified	_QYFVSFLPW_					0	0	0			REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF	REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8002173068	2	593.800217	1185.58588	0.94664	0.00056211	-6.8613	-0.0040743	-5.9147	-0.0035121	593.7959117843262	32.297	0.14481	32.297	32.225	32.37	0	1182	79	0.9093879	0.047790825	0.9093879	368.47855	0	19.364563						139	7	2	NaN	NaN	NaN	0.20577	1	16027	16027		24.961	3.126	1	17106	+		21699	9691	12548	12907	17191	17191					0.0005121748270084936
QYFVSFLPW	9	Unmodified						0	0	0			REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF	REV__ENST00000529281.5_1_11:102933090-102962462:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.800217	1185.58588	0.94664	0.00056211	-6.8613	-0.0040743	-5.9147	-0.0035121	593.7959117843262	32.297	0.14481	32.297	32.225	32.37	0	1182	79	0.9093879	0.047790825	0.9093879	368.47855		19.364563	0.0024173	0.00065417	0.00075972	NaN	24.961	139	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17106	+		21700	9691	12548	12907							0.0005121748270084936
QYGDVMDVF	9	Unmodified	_QYGDVMDVF_					0	0	0		ENST00000456601.1_1_2:239140945-239144573:+|nuORF;nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	ENST00000456601.1_1_2:239140945-239144573:+|nuORF	ENST00000456601.1_1_2:239140945-239144573:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.4608233449999	1	1073.46082	1072.45355	1.6812	0.0018047	-3.0493	-0.0032733	-1.3681	-0.0014686	1073.4574987568662	36.663	0.24069	36.663	36.591	36.832	0	177	94	1.5139546	0.054930925	1.5139546	307.09824	0	11.142456						435	11	3	NaN	NaN	NaN	0.13602	1	11649	11649		30.61	8.4838	1	70813			21701	2281	12549	12908	17192	17192					-0.07978175316407032
QYGDVMDVF	9	Unmodified	_QYGDVMDVF_					0	0	0		ENST00000456601.1_1_2:239140945-239144573:+|nuORF;nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	ENST00000456601.1_1_2:239140945-239144573:+|nuORF	ENST00000456601.1_1_2:239140945-239144573:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.4608233449999	1	1073.46082	1072.45355	1.4837	0.0015927	-2.6435	-0.0028377	-1.1598	-0.001245	1073.458206014949	36.661	0.28866	36.663	36.615	36.904	0.0016747	174	85	1.5157272	0.049612284	1.5142077	307.45776	0	10.063629						473	13	3	NaN	NaN	NaN	0.10956	1	11348	11348		34.439	9.4778	1	70357			21702	2281	12549	12908	17193	17193					-0.07978175316407032
QYGEVANLL	9	Unmodified	_QYGEVANLL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5203871344	1	1006.52039	1005.51311	1.6891	0.0017001	-5.7473	-0.0057848	-4.0582	-0.0040847	1006.5151521428439	26.746	0.14529	26.746	26.746	26.891	0	222	109	1.4873441	0.06393635	1.4873441	301.9555	0	12.980133						168	7	2	NaN	NaN	NaN	0.01452	1	8798	8798		79.199	36.881	1	62565			21703	3308	12550	12909	17194	17194					0.010574636892783928
QYGEVANLL	9	Unmodified	_QYGEVANLL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5203871344	1	1006.52039	1005.51311	1.4476	0.0014571	-6.5547	-0.0065975	-5.1071	-0.0051404	1006.5140913824687	26.77	0.1207	26.759	26.735	26.856	-0.010645	222	124	1.4873441	0.07279706	1.4858247	301.9555	0	14.779022						328	6	5	NaN	NaN	NaN	0.019103	1	8630	8630		73.133	23.172	1	83688			21704	3308	12550	12909	17195	17195					0.010574636892783928
QYGGSSAS	8	Unmodified	_QYGGSSAS_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3158736673	1	756.315874	755.308597	1.3843	0.0010469	-8.4219	-0.0063696	-7.0377	-0.0053227	756.3094748995571	28.097	0.12062	28.088	28.064	28.185	-0.0089798	1038	37	0.997351	0.021933973	0.9958316	203.38367	0	4.47287						92	6	2	NaN	NaN	NaN	0.84207	1	4076	4076		3.5732	0	1	10150	+		21705	9144	12551	12910	17196	17196					-0.0788447540122661
QYGKDFLTL	9	Unmodified	_QYGKDFLTL_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7873068968	2	542.787307	1083.56006	1.3128	0.00071255	-2.4749	-0.0013434	-1.1622	-0.00063082	542.786697974538	24.623	0.14473	24.623	24.598	24.743	0	1161	55	0.9222442	0.03305739	0.9222442	374.0923	0	13.409149						147	7	3	NaN	NaN	NaN	0.12866	1	12125	12125		31.675	0.11439	1	18244			21706	2675	12552	12911	17197	17197					0.02162323240418118
QYGKDFLTL	9	Unmodified	_QYGKDFLTL_					0	0	0		ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	ENSG00000130818|ENST00000253115|ZNF426	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7873068968	2	542.787307	1083.56006	1.2586	0.00068313	0.36774	0.0001996	1.6263	0.00088273	542.7872935482678	24.647	0.096428	24.634	24.61	24.707	-0.012394	1164	64	0.9204082	0.03857732	0.91888875	373.34753	0	15.648224						140	5	3	NaN	NaN	NaN	0.084037	1	11817	11817		38.131	17.618	1	18142			21707	2675	12552	12911	17198	17198					0.02162323240418118
QYHAFISDEDE	11	Unmodified	_QYHAFISDEDE_					0	0	0			REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.2833139411501	2	677.283314	1352.55207	0.87153	0.00059028	1.8538	0.0012556	2.7254	0.0018459	677.2841858949625	29.883	0.21712	29.876	29.755	29.972	-0.0070667	1122	97	0.9460945	0.05869901	0.9445751	382.80698	0	23.750702						480	10	3	NaN	NaN	NaN	0.65577	1	18692	18692		10.36	1.3982	1	49651	+		21708	10055	12553	12912	17199	17199					-0.110099005376469
QYHAFISDEDE	11	Unmodified						0	0	0			REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	677.283314	1352.55207	1.5955	0.0010806	0.63201	0.00042805	2.2275	0.0015087	677.7857423288614	29.932	0.2172	29.932	29.763	29.98	0	1122	85	0.9460945	0.05136162	0.9460945	382.80698		20.78183	0.028116	-0.00083089	0.00075972	NaN	10.36	323	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36046	+		21709	10055	12553	12912							-0.110099005376469
QYHAFISDEDE	11	Unmodified						0	0	0			REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.283314	1352.55207	0.87153	0.00059028	1.8538	0.0012556	2.7254	0.0018459	677.2841858949625	29.883	0.21712	29.876	29.755	29.972	-0.0070667	1122	97	0.9460945	0.05869901	0.9445751	382.80698		23.750702	-0.028116	0.00082417	-0.00075972	NaN	10.36	480	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49651	+		21710	10055	12553	12912							-0.110099005376469
QYHFVFNNF	9	Unmodified	_QYHFVFNNF_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.2827230454001	2	608.282723	1214.55089	1.4239	0.0008661	1.8287	0.0011124	3.2526	0.0019785	608.7855483314951	26.118	0.14479	26.107	26.107	26.252	-0.011137	1161	73	0.9222442	0.044076502	0.92072475	373.5853	0	17.854645						236	7	4	NaN	NaN	NaN	0.23112	1	16163	16163		23.334	8.9094	1	27132			21711	8040	12554	12913	17200	17200					-0.04780025325248971
QYIDKLNAL	9	Unmodified	_QYIDKLNAL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.30058144755	2	539.300581	1076.58661	1.2339	0.00066546	-1.2648	-0.00068211	-0.030886	-1.6657E-05	539.2998397782178	21.778	0.16854	21.764	21.764	21.932	-0.013895	1233	49	0.87812483	0.029451072	0.8766054	356.22498	0	11.947266						162	8	2	NaN	NaN	NaN	0.12328	1	11526	11526		32.453	6.3378	1	38187			21712	439	12555	12914	17201	17201					0.05138012131760661
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1015.6186446160001	1	1015.61864	1014.61137	1.7898	0.0018177	0.3681	0.00037385	2.1579	0.0021916	1015.6186801445092	34.252	0.096508	34.252	34.203	34.3	0	135	70	1.5387528	0.040712	1.5387528	312.3544	0	8.264191						143	5	3	NaN	NaN	NaN	0.14301	1	9173	9173		29.598	1.8095	1	15241			21713	4361	12556	12915	17202	17202					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.6186446160001	1	1015.61864	1014.61137	1.5009	0.0015244	0.18588	0.00018878	1.6868	0.0017132	1015.6189347825504	34.227	0.096493	34.225	34.201	34.298	-0.0012474	132	64	1.5405227	0.03717172	1.5390033	312.71365	0	7.5455627						142	5	3	NaN	NaN	NaN	0.078597	1	8997	8997		38.918	9.3195	1	14905			21714	4361	12556	12915	17203	17203					0.10464692005132292
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.84495916145	2	598.844959	1195.67537	0.55736	0.00033377	-8.4417	-0.0050553	-7.8844	-0.0047215	598.8422137588706	33.335	0.12067	33.335	33.287	33.407	0	1152	58	0.92775106	0.034884453	0.92775106	375.88272	0	14.133606						142	6	3	NaN	NaN	NaN	0.16171	1	16342	16342		27.789	17.184	1	15556			21715	1325	12557	12916	17204	17204					0.08535472162066071
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.84495916145	2	598.844959	1195.67537	1.5577	0.00093285	-1.4338	-0.00085862	0.12394	7.4223E-05	598.844097360175	32.563	0.31368	32.563	32.49	32.804	0	1146	82	0.93142134	0.049556673	0.93142134	377.36972	0	20.078125						607	14	5	NaN	NaN	NaN	0.0072287	1	16343	16343		98.041	48.08	1	526920			21716	1325	12557	12916	17205	17205					0.08535472162066071
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.84495916145	2	598.844959	1195.67537	1.2147	0.00072742	-1.5638	-0.00093646	-0.34907	-0.00020904	598.8439278092914	32.586	0.28962	32.583	32.51	32.8	-0.0031052	1149	85	0.92958635	0.051389337	0.9280669	376.62625	0	20.820648						663	13	5	NaN	NaN	NaN	3.4198E-12	1	15698	15698		150.79	86.836	1	555800			21717	1325	12557	12916	17206	17206					0.08535472162066071
QYIPTFHVY	9	Unmodified	_QYIPTFHVY_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2952991044001	2	584.295299	1166.57605	1.7359	0.0010143	-2.8656	-0.0016743	-1.1296	-0.00066004	584.2934283892153	24.743	0.12066	24.743	24.719	24.84	0	1098	34	0.960755	0.020150542	0.960755	389.36514	0	8.166412						99	6	3	NaN	NaN	NaN	0.27442	1	15360	15360		20.555	8.5067	1	11489			21718	3125	12558	12917	17207	17207					-0.0005797052267553227
QYIPTFHVY	9	Unmodified	_QYIPTFHVY_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2952991044001	2	584.295299	1166.57605	1.436	0.00083905	-1.9196	-0.0011216	-0.48358	-0.00028255	584.2937618103666	24.767	0.072361	24.755	24.731	24.803	-0.012392	1098	34	0.960755	0.020150542	0.9592356	389.36514	0	8.166412						89	4	3	NaN	NaN	NaN	0.45297	1	14830	14830		11.548	3.9609	1	9724.1			21719	3125	12558	12917	17208	17208					-0.0005797052267553227
QYLDNLLVRF	10	Unmodified	_QYLDNLLVRF_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.85351247505	2	640.853512	1279.69247	2.0594	0.0013197	-2.8938	-0.0018545	-0.83439	-0.00053472	640.8515537824794	30.004	0.12071	30.004	29.956	30.077	0	1086	46	0.9680805	0.027466238	0.9680805	391.92844	0	11.11972						121	6	2	NaN	NaN	NaN	0.0072459	1	18422	18422		74.794	54.281	1	28199			21720	2304	12559	12918	17209	17209					0.06381347977230689
QYLDNLLVRF	10	Unmodified	_QYLDNLLVRF_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.85351247505	2	640.853512	1279.69247	1.5345	0.00098337	-3.272	-0.0020969	-1.7376	-0.0011135	640.851559529557	30.004	0.19306	29.997	29.949	30.142	-0.0064106	1083	49	0.9699114	0.029298902	0.96839195	392.66968	0	11.861694						188	9	3	NaN	NaN	NaN	0.0036584	1	17603	17603		80.442	58.591	1	29495			21721	2304	12559	12918	17210	17210					0.06381347977230689
QYLEKYYNL	9	Unmodified	_QYLEKYYNL_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.31114613385	2	617.311146	1232.60774	1.3844	0.0008546	-1.6808	-0.0010376	-0.29638	-0.00018296	617.3098074111853	22.019	0.1687	22.019	21.922	22.091	0	1134	88	0.9387595	0.05318159	0.9387595	380.21277	0	21.539398						293	8	4	NaN	NaN	NaN	0.0092442	1	17341	17341		93.929	45.927	1	50537			21722	4501	12560	12919	17211	17211					0.0007397744061563571
QYLEKYYNL	9	Unmodified	_QYLEKYYNL_					0	0	0		ENSG00000166670|ENST00000279441|MMP10;chr11:102778716-102779213|342|17.08|0.08|7.67|-|ENST00000539681|MMP10,MMP10	ENSG00000166670|ENST00000279441|MMP10	ENSG00000166670|ENST00000279441|MMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.31114613385	2	617.311146	1232.60774	0.75764	0.0004677	-1.9138	-0.0011814	-1.1562	-0.00071372	617.310115021139	22.018	0.072186	22.004	21.98	22.053	-0.013895	1134	91	0.9387595	0.055012465	0.93724006	380.21277	0	22.280945						215	4	4	NaN	NaN	NaN	0.028569	1	16614	16614		60.984	26.53	1	40698			21723	4501	12560	12919	17212	17212					0.0007397744061563571
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.28493138335	2	537.284931	1072.55531	2.3423	0.0012585	-1.1744	-0.00063099	1.1679	0.00062747	537.2841599848693	23.079	0.19266	23.079	23.007	23.2	0	1212	106	0.8910048	0.06444168	0.8910048	361.4671	0	26.143005						416	9	3	NaN	NaN	NaN	0.062072	1	11669	11669		41.785	23.986	1	74671			21724	4083	12561	12920	17213	17213					0.021934390976412033
QYLENLEKL	9	Unmodified	_QYLENLEKL_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000540706.5_1_16:21899129-21899858:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.31114613385	2	575.311146	1148.60774	1.9065	0.0010969	-5.3106	-0.0030552	-3.404	-0.0019584	575.3077042344703	23.393	0.1688	23.393	23.345	23.513	0	1194	58	0.902037	0.034933507	0.902037	365.63535	0	14.160095						195	8	3	NaN	NaN	NaN	0.077759	1	14763	14763		39.039	11.743	1	23800			21725	3944	12562	12921	17214	17214					0.03937977440614304
QYLENLEKL	9	Unmodified						0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000540706.5_1_16:21899129-21899858:-|nuORF	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.311146	1148.60774	1.6737	0.00096292	-3.6308	-0.0020888	-1.9571	-0.0011259	575.3089908039584	23.416	0.16893	23.403	23.355	23.524	-0.013294	1191	61	0.90387505	0.036762178	0.9023556	366.38037		14.901337	0.0051804	0.00082758	0.00015929	NaN	39.039	198	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27017			21726	3944	12562	12921							0.03937977440614304
QYLEQSSKL	9	Unmodified	_QYLEQSSKL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.28767103755	2	548.287671	1094.56079	1.728	0.00094743	-2.1173	-0.0011609	-0.38928	-0.00021344	548.2865827554027	16.634	0.1439	16.621	16.573	16.717	-0.013294	1245	43	0.87076044	0.025780857	0.869241	353.16425	0	10.456238						138	7	3	NaN	NaN	NaN	0.026443	1	12281	12281		63.765	27.178	1	16727			21727	5009	12563	12922	17215	17215					0.017291178894765835
QYLERLKQF	9	Unmodified	_QYLERLKQF_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8404050997999	2	612.840405	1223.66626	1.1746	0.00071983	-3.2653	-0.0020011	-2.0907	-0.0012813	613.3404781734575	19.156	0.095934	19.156	19.132	19.228	0	1155	31	0.92591566	0.01835531	0.92591566	375.04117	0	7.4348145						59	5	2	NaN	NaN	NaN	0.030545	1	17071	17071		58.398	8.5649	1	4864.5			21728	1632	12564	12923	17216	17216					0.0633707880572274
QYLGEPETFLF	11	Unmodified	_QYLGEPETFLF_					0	0	0		nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion;nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-4|OGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3295358522499	2	672.329536	1342.64452	0.79065	0.00053158	-6.7723	-0.0045532	-5.9817	-0.0040217	672.3247100290691	33.527	0.072411	33.525	33.501	33.573	-0.0018501	1104	49	0.9570911	0.029314697	0.95557165	387.28534	0	11.862152						60	4	2	NaN	NaN	NaN	0.58731	1	18584	18584		14.854	8.4241	1	4908.5			21729	53	12565	12924	17217	17217					-0.01309770733496407
QYLKILTSL	9	Unmodified	_QYLKILTSL_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8289747462501	2	539.828975	1077.6434	1.4616	0.00078903	-2.9237	-0.0015783	-1.462	-0.00078925	539.8273259330725	27.277	0.096521	27.277	27.253	27.35	0	1212	64	0.8910048	0.038639963	0.8910048	361.44547	0	15.674683						179	5	4	NaN	NaN	NaN	0.33629	1	11881	11881		16.584	0.76223	1	26229			21730	967	12566	12925	17218	17218					0.10768059688280118
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.6084738601999	1	1083.60847	1082.6012	1.1357	0.0012306	-1.7522	-0.0018987	-0.61655	-0.00066809	1083.607191440482	32.249	0.072372	32.249	32.225	32.297	0	60	73	1.582944	0.04238534	1.582944	321.05417	0	8.596649						113	4	2	NaN	NaN	NaN	0.013281	1	12108	12108		82.96	32.999	1	14849			21731	4400	12567	12926	17219	17219					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.3078751634	2	542.307875	1082.6012	1.2654	0.00068626	-1.4906	-0.00080837	-0.22518	-0.00012212	542.3069560799023	32.249	0.16892	32.249	32.201	32.37	0	1239	46	0.87444305	0.027614892	0.87444305	354.7065	0	11.20163						218	8	4	NaN	NaN	NaN	0.016254	1	12109	12109		76.739	41.443	1	47057			21732	4400	12567	12926	17220	17220					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.3078751634	2	542.307875	1082.6012	0.85886	0.00046577	-1.1255	-0.00061039	-0.26667	-0.00014462	542.307322685678	32.224	0.16893	32.22	32.172	32.341	-0.0037613	1236	43	0.876284	0.025772452	0.8747646	355.45328	0	10.454254						192	8	4	NaN	NaN	NaN	0.023828	1	11795	11795		67.154	39.365	1	47462			21733	4400	12567	12926	17221	17221					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.6084738601999	1	1083.60847	1082.6012	1.0416	0.0011287	-0.61528	-0.00066672	0.42635	0.00046199	1083.60697343726	32.224	0.096531	32.22	32.196	32.292	-0.0037613	60	46	1.582944	0.02647829	1.5814246	321.05417	0	5.370331						104	5	3	NaN	NaN	NaN	0.019103	1	11796	11796		73.133	38.694	1	10404			21734	4400	12567	12926	17222	17222					0.06320084279900584
QYLMDNPTF	9	Unmodified	_QYLMDNPTF_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.75514948865	2	564.755149	1127.49575	1.4368	0.00081141	5.8428	0.0032998	7.2796	0.0041112	564.7594872251076	26.408	0.19304	26.397	26.349	26.542	-0.011137	1200	124	0.89836043	0.075407326	0.896841	364.22586	0	30.572693						302	9	3	NaN	NaN	NaN	0.16171	1	13546	13546		27.789	3.2268	1	36591			21735	5632	12568	12927	17223	17223					-0.0629019990803954
QYLMDNPTF	9	Unmodified						0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.755149	1127.49575	2.162	0.001221	1.4274	0.00080612	3.5894	0.0020271	564.7551855143698	26.384	0.12066	26.384	26.36	26.481	0	1167	91	0.91857195	0.055137336	0.91857195	372.42035		22.354553	-0.0063683	-0.0024715	0.010865	NaN	27.789	156	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21136			21736	5632	12568	12927							-0.0629019990803954
QYLPAIRALW	10	Unmodified	_QYLPAIRALW_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.8533155098	2	615.853316	1229.69208	0.89498	0.00055118	0.1616	9.9519E-05	1.0566	0.00065069	615.8533438461841	29.112	0.1448	29.112	29.063	29.208	0	1167	73	0.91857195	0.044062257	0.91857195	372.04626	0	17.846375						227	7	3	NaN	NaN	NaN	0.31086	1	17256	17256		27.296	6.7829	1	28688			21737	2247	12569	12928	17224	17224					0.0864197304802019
QYLPAIRALW	10	Unmodified	_QYLPAIRALW_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.8533155098	2	615.853316	1229.69208	0.6443	0.00039679	2.0582	0.0012675	2.7025	0.0016643	615.8551726754781	29.135	0.19306	29.127	29.079	29.272	-0.0077229	1164	76	0.9204082	0.0458858	0.91888875	372.78998	0	18.58496						313	9	3	NaN	NaN	NaN	0.20271	1	16544	16544		35.296	18.712	1	39651			21738	2247	12569	12928	17225	17225					0.0864197304802019
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.81673303825	2	548.816733	1095.61891	2.0056	0.0011007	-2.1606	-0.0011858	-0.15503	-8.5083E-05	548.81528378069	18.652	0.16788	18.652	18.604	18.772	0	1185	64	0.90755045	0.038602352	0.90755045	368.08115	0	15.656189						182	8	3	NaN	NaN	NaN	0.13602	1	12666	12666		30.61	6.0481	1	31561			21739	3622	12570	12929	17226	17226					0.07492844325406622
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.2135808477	3	366.213581	1095.61891	2.3775	0.00087066	-2.2894	-0.0008384	0.088102	3.2264E-05	366.2126233261913	18.652	0.16788	18.652	18.604	18.772	0	1419	49	0.76361835	0.029652655	0.76361835	464.5532	0	18.039398						266	8	4	NaN	NaN	NaN	0.094712	1	12667	12667		31.675	12.339	1	90009			21740	3622	12570	12929	17227	17227					0.07492844325406622
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.2135808477	3	366.213581	1095.61891	1.9514	0.00071464	-2.234	-0.00081812	-0.28258	-0.00010349	366.21243575611163	18.89	0.26427	18.876	18.756	19.02	-0.014061	1419	43	0.76361835	0.02594322	0.7620989	464.5532	0	15.782776						261	12	3	NaN	NaN	NaN	0.23112	1	12341	12341		20.513	13.529	1	69785			21741	3622	12570	12929	17228	17228					0.07492844325406622
QYLPHVARL	9	Unmodified						0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.816733	1095.61891	1.5933	0.00087444	-0.97971	-0.00053768	0.61362	0.00033676	548.8157400563749	18.914	0.24028	18.9	18.78	19.02	-0.014059	1185	58	0.90755045	0.034922183	0.906031	368.08115		14.163605	0.12369	0.00068555	-0.00075972	NaN	30.61	258	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32502			21742	3622	12570	12929							0.07492844325406622
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1159.6033884823	1	1159.60339	1158.59611	1.7129	0.0019862	-1.1343	-0.0013154	0.57853	0.00067087	1159.6005917174982	32.682	0.1448	32.679	32.607	32.751	-0.0031052	60	67	1.582944	0.038849115	1.5814246	320.78894	0	7.872925						227	7	3	NaN	NaN	NaN	0.011206	1	14600	14600		89.256	44.091	1	21890			21743	4564	12571	12930	17229	17229					0.023157804172797114
QYLQDAYSF	9	Unmodified	_QYLQDAYSF_					0	0	0		ENST00000538600.1_1_12:6631091-6632090:+|nuORF;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7587464226	2	567.758746	1133.50294	1.8158	0.0010309	0.70179	0.00039845	2.5176	0.0014294	567.7596761540086	25.66	0.16886	25.648	25.6	25.769	-0.011602	1176	43	0.9130621	0.025716841	0.91154265	370.16275	0	10.425842						130	8	3	NaN	NaN	NaN	0.27608	1	13763	13763		20.449	4.986	1	16172			21744	390	12572	12931	17230	17230					-0.05847144035965357
QYLQDAYSF	9	Unmodified						0	0	0		ENST00000538600.1_1_12:6631091-6632090:+|nuORF;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENSG00000010292|ENST00000315579|NCAPD2	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENST00000538600.1_1_12:6631091-6632090:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.758746	1133.50294	2.1776	0.0012363	-1.3879	-0.00078801	0.78965	0.00044833	567.7574627033439	25.66	0.072426	25.66	25.612	25.684	0	1176	43	0.9130621	0.02571404	0.9130621	370.16278		10.424683	0.0059326	-0.0010694	0.00075972	NaN	20.449	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9770			21745	390	12572	12931							-0.05847144035965357
QYLQSLQRV	9	Unmodified	_QYLQSLQRV_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|97|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.8169300034999	2	567.81693	1133.61931	1.7956	0.0010196	-5.0068	-0.002843	-3.2112	-0.0018234	567.8134045277939	19.3	0.14393	19.3	19.276	19.42	0	1203	34	0.8965218	0.020226836	0.8965218	363.45676	0	8.200134						118	7	4	NaN	NaN	NaN	0.46215	1	14229	14229		11.17	3.5827	1	9071.6			21746	7817	12573	12932	17231	17231					0.05784219254587697
QYLRNPPKL	9	Unmodified	_QYLRNPPKL_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.88898576453334	3	376.888986	1127.64513	2.3868	0.00089957	-3.5197	-0.0013265	-1.1329	-0.00042698	377.22233869357746	16.443	0.071943	16.43	16.406	16.478	-0.012995	1431	31	0.75620437	0.018538952	0.7546849	459.88083	0	11.2743225						52	4	2	NaN	NaN	NaN	0.29341	1	13565	13565		19.336	12.907	1	4880.2			21747	4068	12574	12933	17232	17232					0.08641113496878461
QYLRNPPKL	9	Unmodified						0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	376.888986	1127.64513	1.6848	0.000635	-1.2775	-0.00048147	0.40736	0.00015353	377.2228852051934	16.35	0.11994	16.35	16.326	16.446	0	1431	34	0.75620437	0.020391703	0.75620437	459.88083		12.401093	-0.039927	0.00082756	0.00075972	NaN	19.336	103	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7157			21748	4068	12574	12933							0.08641113496878461
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.57176815656663	3	432.571768	1294.69348	2.1314	0.00092199	-1.7806	-0.00077022	0.35084	0.00015176	432.57110913455614	18.101	0.4078	18.101	17.981	18.388	0	1449	55	0.74507743	0.03338456	0.74507743	452.4084	0	20.270966						610	18	3	NaN	NaN	NaN	0.056143	1	18684	18684		45.165	25.261	1	202140			21749	5332	12575	12934	17233	17233					0.057916071367799304
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.35401400155	2	648.354014	1294.69348	2.18	0.0014134	1.2223	0.0007925	3.4023	0.0022059	648.8572023892258	18.125	0.19192	18.125	18.029	18.221	0	1077	31	0.9735726	0.01830393	0.9735726	394.10312	0	7.409424						129	9	3	NaN	NaN	NaN	0.27442	1	18685	18685		20.555	9.007	1	9402.9			21750	5332	12575	12934	17234	17234					0.057916071367799304
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.57176815656663	3	432.571768	1294.69348	1.333	0.0005766	-1.1667	-0.00050468	0.16625	7.1917E-05	432.90495608169056	19.972	0.096302	19.958	19.958	20.054	-0.014141	1449	37	0.74507743	0.022258759	0.743558	452.4084	0	13.515442						89	5	3	NaN	NaN	NaN	0.55027	1	17843	17843		14.425	7.6175	1	7928.7			21751	5332	12575	12934	17235	17235					0.057916071367799304
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3089377959	2	592.308938	1182.60332	1.4908	0.00088299	-1.9916	-0.0011796	-0.50082	-0.00029664	592.3078443456596	21.537	0.14464	21.537	21.44	21.585	0	1170	52	0.91673553	0.031222522	0.91673553	371.46652	0	12.651581						181	7	3	NaN	NaN	NaN	0.0021374	1	15928	15928		110.61	77.18	1	51051			21752	6205	12576	12935	17236	17236					0.019325130176866878
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3089377959	2	592.308938	1182.60332	1.2103	0.00071686	-2.5536	-0.0015125	-1.3433	-0.00079567	592.3076229759337	21.537	0.19272	21.523	21.475	21.667	-0.014004	1170	49	0.91673553	0.029384315	0.9152161	371.46652	0	11.906708						244	9	3	NaN	NaN	NaN	0.0052656	1	15325	15325		102.05	64.744	1	54851			21753	6205	12576	12935	17237	17237					0.019325130176866878
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.790380902	2	544.790381	1087.56621	1.2341	0.00067233	-1.6101	-0.00087717	-0.376	-0.00020484	544.789634318487	21.079	0.12042	21.079	21.055	21.175	0	1227	46	0.88180584	0.027605891	0.88180584	357.6726	0	11.197327						141	6	3	NaN	NaN	NaN	0.022185	1	12284	12284		69.233	37.557	1	19562			21754	505	12577	12936	17238	17238					0.025928414719373905
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.790380902	2	544.790381	1087.56621	1.1284	0.00061474	-0.98808	-0.0005383	0.14033	7.6448E-05	544.7899085093228	21.079	0.12036	21.065	21.041	21.162	-0.014004	1227	40	0.88180584	0.023922563	0.8802864	357.6726	0	9.703308						123	6	3	NaN	NaN	NaN	0.16171	1	11976	11976		27.789	13.747	1	17181			21755	505	12577	12936	17239	17239					0.025928414719373905
QYMELFNKI	9	Unmodified	_QYMELFNKI_					0	0	0		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.3022668567501	2	593.302267	1184.58998	1.9104	0.0011335	-2.5641	-0.0015213	-0.65368	-0.00038783	593.3010473715563	26.022	0.21724	26.022	25.901	26.119	0	1164	79	0.9204082	0.047728956	0.9204082	372.9475	0	19.339691						264	10	4	NaN	NaN	NaN	3.7692E-08	1	15997	15997		140.15	72.992	1	64917			21756	2430	12578	12937	17240	17240					0.005069389141226566
QYMELFNKI	9	Unmodified	_QYMELFNKI_					0	0	0		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.3022668567501	2	593.302267	1184.58998	1.7676	0.0010487	-1.3962	-0.00082836	0.37141	0.00022036	593.3022220087693	26.046	0.19312	26.035	25.962	26.156	-0.011135	1164	88	0.9204082	0.05324477	0.91888875	372.94748	0	21.574677						321	9	4	NaN	NaN	NaN	0.01966	1	15388	15388		72.428	35.126	1	71425			21757	2430	12578	12937	17241	17241					0.005069389141226566
QYMELFNKI	9	Oxidation (M)	_QYM(Oxidation (M))ELFNKI_		QYM(1)ELFNKI		QYM(40)ELFNKI	0	0	1		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2997241678	2	601.299724	1200.5849	1.2119	0.0007287	-10.154	-0.0061055	-8.942	-0.0053768	601.2932625884258	22.862	0.21693	22.848	22.776	22.993	-0.01354	1161	139	0.9222442	0.084516585	0.92072475	373.63416	0	34.240692						423	10	3	NaN	NaN	NaN	0.070055	1	15842	15842		40.154	19.64	1	95081			21758	2430	12578	12938	17242	17242		273			-0.007373649485089118
QYMERLQLL	9	Unmodified	_QYMERLQLL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3209909261501	2	597.320991	1192.62743	1.768	0.0010561	-1.4738	-0.00088031	0.29423	0.00017575	597.3204413122883	25.105	0.16889	25.105	25.009	25.178	0	1161	82	0.9222442	0.049562037	0.9222442	373.66245	0	20.080872						404	8	5	NaN	NaN	NaN	5.7913E-18	1	16231	16231		158.81	83.109	1	279780			21759	4877	12579	12939	17243	17243					0.03882030179738649
QYMERLQLL	9	Unmodified	_QYMERLQLL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3209909261501	2	597.320991	1192.62743	1.6199	0.00096759	-1.0709	-0.00063967	0.54899	0.00032792	597.3207587656781	25.105	0.31357	25.093	25.069	25.382	-0.012011	1158	73	0.92408	0.044071734	0.9225606	374.40628	0	17.856384						469	14	4	NaN	NaN	NaN	1.1649E-05	1	15616	15616		128.29	55.866	1	263060			21760	4877	12579	12939	17244	17244					0.03882030179738649
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(110)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.3184482372001	2	605.318448	1208.62234	2.077	0.0012573	-2.6954	-0.0016316	-0.61836	-0.0003743	605.3169523553541	22.935	0.28907	22.935	22.887	23.176	0	1155	82	0.92591566	0.04957807	0.92591566	375.09323	0	20.08435						660	13	6	NaN	NaN	NaN	0.0021374	1	16698	16698		110.61	74.37	1	317380			21761	4877	12579	12940	17245	17245		511			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(130)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.3184482372001	2	605.318448	1208.62234	1.5847	0.00095925	-1.7497	-0.0010591	-0.16499	-9.9869E-05	605.3173133463171	22.982	0.28922	22.969	22.921	23.21	-0.01354	1155	82	0.92591566	0.049583375	0.9243962	375.09323	0	20.086517						671	13	6	NaN	NaN	NaN	1.1649E-05	1	16026	16026		128.29	80.813	1	322990			21762	4877	12579	12940	17246	17246		511			0.02637726317107081
QYMKIISSF	9	Unmodified	_QYMKIISSF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7915349949501	2	558.791535	1115.56852	1.2879	0.00071966	-2.2431	-0.0012534	-0.95524	-0.00053378	558.790085061706	24.526	0.14468	24.526	24.502	24.647	0	1158	49	0.92408	0.029374838	0.92408	374.7019	0	11.911072						197	7	4	NaN	NaN	NaN	0.41527	1	13501	13501		19.164	6.5757	1	35803			21763	4739	12580	12941	17247	17247					0.015355538854009865
QYMKIISSF	9	Unmodified	_QYMKIISSF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7915349949501	2	558.791535	1115.56852	1.24	0.00069292	-1.2053	-0.00067351	0.034731	1.9407E-05	558.7908682049243	24.574	0.24112	24.562	24.514	24.755	-0.012392	1155	43	0.92591566	0.025700212	0.9243962	375.44623	0	10.421082						213	11	4	NaN	NaN	NaN	0.14227	1	13111	13111		40.154	23.737	1	35481			21764	4739	12580	12941	17248	17248					0.015355538854009865
QYMKIISSF	9	Oxidation (M)	_QYM(Oxidation (M))KIISSF_		QYM(1)KIISSF		QYM(40)KIISSF	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7889923060001	2	566.788992	1131.56343	0.91998	0.00052143	-1.7742	-0.0010056	-0.85425	-0.00048418	566.7881413097776	21.031	0.14445	21.017	20.945	21.089	-0.014086	1173	49	0.91489893	0.029387534	0.9133795	370.91507	0	11.914185						242	7	4	NaN	NaN	NaN	0.070055	1	13699	13699		40.154	9.5437	1	39334			21765	4739	12580	12942	17249	17249		504			0.002912500227921555
QYMNFMNVIF	10	Unmodified	_QYMNFMNVIF_					0	0	0		nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	nc|ENSG00000111358|Q13889-2|GTF2H3	nc|ENSG00000111358|Q13889-2|GTF2H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.8015767525001	2	653.801577	1305.5886	1.1174	0.00073058	-0.73431	-0.0004801	0.38311	0.00025048	654.3026226477199	36.904	0.072117	36.904	36.856	36.928	0	1122	31	0.9460945	0.018333495	0.9460945	382.94626	0	7.4207764						84	4	3	NaN	NaN	NaN	0.44258	1	18866	18866		21.835	13.59	1	4411.2			21766	1804	12581	12943	17250	17250					-0.05197018446301627
QYMNFMNVIF	10	2 Oxidation (M)	_QYM(Oxidation (M))NFM(Oxidation (M))NVIF_		QYM(1)NFM(1)NVIF		QYM(47)NFM(47)NVIF	0	0	2		nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	nc|ENSG00000111358|Q13889-2|GTF2H3	nc|ENSG00000111358|Q13889-2|GTF2H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.7964913746001	2	669.796491	1337.57843	1.0825	0.00072504	-0.71687	-0.00048015	0.36561	0.00024488	669.7959613488757	29.28	0.24129	29.272	29.2	29.441	-0.0077229	1116	70	0.94976085	0.042146683	0.9482414	384.33395	0	17.055267						259	11	3	NaN	NaN	NaN	0.091497	1	18497	18497		47.136	31.673	1	27397			21767	1804	12581	12944	17251	17251		202;203			-0.07685626171519289
QYNMNFEKL	9	Unmodified	_QYNMNFEKL_					0	0	0		nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7	nc|ENSG00000165806|P55210-4|CASP7	nc|ENSG00000165806|P55210-4|CASP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.7816985901501	2	593.781699	1185.54884	0.86333	0.00051263	1.123	0.00066683	1.9864	0.0011795	593.7831146912939	22.018	0.14445	22.004	21.932	22.077	-0.013895	1194	76	0.902037	0.045965135	0.9005176	365.50012	0	18.624786						207	7	3	NaN	NaN	NaN	0.045904	1	15412	15412		48.65	12.064	1	39452			21768	4428	12582	12945	17252	17252					-0.036508221253598094
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.19295685593335	3	379.192957	1134.55704	2.0623	0.00078199	-2.4643	-0.00093443	-0.402	-0.00015244	379.1918648782804	13.445	0.24011	13.445	13.421	13.661	0	1470	49	0.7320868	0.029707372	0.7320868	445.18118	0	18.065002						323	11	4	NaN	NaN	NaN	0.094712	1	14260	14260		25.801	14.062	1	95913			21769	3728	12583	12946	17253	17253					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2857970506001	2	568.285797	1134.55704	2.2753	0.001293	-2.6693	-0.0015169	-0.394	-0.00022391	568.2836550257048	13.445	0.24011	13.445	13.421	13.661	0	1203	76	0.8965218	0.04598999	0.8965218	363.45316	0	18.6445						464	11	4	NaN	NaN	NaN	6.3027E-18	1	14261	14261		158.11	82.415	1	77821			21770	3728	12583	12946	17254	17254					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2857970506001	2	568.285797	1134.55704	1.1782	0.00066955	-2.5024	-0.0014221	-1.3242	-0.00075255	568.2844185401393	13.517	0.21594	13.507	13.459	13.675	-0.010098	1200	79	0.89836043	0.047827005	0.896841	364.19852	0	19.389221						337	10	2	NaN	NaN	NaN	0.00020136	1	13798	13798		116.74	79.434	1	64472			21771	3728	12583	12946	17255	17255					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	ENST00000459739.5_1_10:79567604-79581271:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.19295685593335	3	379.192957	1134.55704	1.5151	0.00057451	-1.8676	-0.0007082	-0.35254	-0.00013368	379.1921854592361	13.517	0.3118	13.507	13.435	13.747	-0.010098	1473	61	0.7302302	0.03712207	0.7287108	444.05215	0	22.573914						258	14	2	NaN	NaN	NaN	0.29681	1	13799	13799		12.57	0	1	95291			21772	3728	12583	12946	17256	17256					-0.004855070937082928
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.7982059341001	2	569.798206	1137.58186	2.2566	0.0012858	6.359	0.0036233	8.6155	0.0049091	569.8024941764842	18.988	0.19193	18.988	18.94	19.132	0	1167	112	0.91857195	0.06802112	0.91857195	372.38043	0	27.575104						632	9	4	NaN	NaN	NaN	0.0021374	1	14371	14371		110.61	55.192	1	160990			21773	2089	12584	12947	17257	17257					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.7982059341001	2	569.798206	1137.58186	1.4838	0.00084545	-1.5193	-0.00086567	-0.035494	-2.0224E-05	569.7975411113333	19.01	0.28834	18.996	18.876	19.164	-0.014059	1167	100	0.91857195	0.060654342	0.9170525	372.38046	0	24.588684						379	13	3	NaN	NaN	NaN	0.02857	1	13904	13904		60.982	15.817	1	94879			21774	2089	12584	12947	17258	17258					0.018571279890011283
QYNPKFQTLF	10	Unmodified	_QYNPKFQTLF_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3324128922001	2	643.332413	1284.65027	1.5324	0.00098584	-1.4742	-0.0009484	0.058204	3.7444E-05	643.3311271037701	24.454	0.14466	24.454	24.43	24.574	0	1086	70	0.9680805	0.042142153	0.9680805	391.9123	0	17.060577						166	7	3	NaN	NaN	NaN	0.47445	1	18513	18513		20.513	11.551	1	19311			21775	2089	12585	12948	17259	17259					0.01933372568851155
QYNPKFQTLF	10	Unmodified	_QYNPKFQTLF_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;nc|ENSG00000163374|Q9H869-4|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.3324128922001	2	643.332413	1284.65027	1.912	0.0012301	-2.207	-0.0014198	-0.29498	-0.00018977	643.3308906040891	24.478	0.096525	24.465	24.441	24.537	-0.012747	1089	40	0.96624947	0.023806632	0.96473	391.17102	0	9.637756						142	5	3	NaN	NaN	NaN	0.19179	1	17689	17689		36.235	25.875	1	17577			21776	2089	12585	12948	17260	17260					0.01933372568851155
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.30840647965	2	570.308406	1138.60226	1.8541	0.0010574	-1.8255	-0.0010411	0.028563	1.629E-05	570.3071037178998	22.405	0.14451	22.405	22.356	22.501	0	1191	49	0.90387505	0.029409707	0.90387505	366.41855	0	11.922302						217	7	4	NaN	NaN	NaN	0.04743	1	14407	14407		48.002	30.203	1	41764			21777	622	12586	12949	17261	17261					0.038502986487856106
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.30840647965	2	570.308406	1138.60226	1.0397	0.00059296	-1.8734	-0.0010684	-0.83364	-0.00047543	570.3073616137539	22.404	0.19269	22.39	22.366	22.559	-0.013733	1194	64	0.902037	0.038610697	0.9005176	365.67343	0	15.652252						238	9	4	NaN	NaN	NaN	0.015029	1	13937	13937		78.289	55.172	1	50236			21778	622	12586	12949	17262	17262					0.038502986487856106
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.84261343775	2	643.842613	1285.67067	1.6806	0.0010821	-1.8852	-0.0012137	-0.20455	-0.00013169	643.8412639670964	27.109	0.16891	27.109	27.084	27.253	0	1110	46	0.95342636	0.02749288	0.95342636	385.97653	0	11.129974						207	8	4	NaN	NaN	NaN	0.064658	1	18535	18535		50.831	38.261	1	39491			21779	622	12587	12950	17263	17263					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.84261343775	2	643.842613	1285.67067	1.7061	0.0010984	-3.0111	-0.0019387	-1.305	-0.00084025	643.8409176285079	27.156	0.16893	27.146	27.074	27.242	-0.010126	1110	43	0.95342636	0.025655925	0.9519069	385.97653	0	10.3862915						204	8	4	NaN	NaN	NaN	0.26393	1	17705	17705		30.035	19.07	1	36096			21780	622	12587	12950	17264	17264					0.03926543228635637
QYPAQLQQFK	10	Unmodified	_QYPAQLQQFK_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.8300373787499	2	625.830037	1249.64552	1.835	0.0011484	-8.6953	-0.0054418	-6.8603	-0.0042934	625.8243123457557	22.863	0.096521	22.863	22.814	22.911	0	1116	43	0.94976085	0.02566415	0.94976085	384.6104	0	10.392853						106	5	3	NaN	NaN	NaN	0.56921	1	17773	17773		16.584	4.8453	1	8968.3	+		21781	11394	12588	12951	17265	17265					0.03068488426060867
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2973104771	2	554.29731	1106.58007	0.92842	0.00051462	-0.82269	-0.00045602	0.10572	5.8603E-05	554.2972692070548	36.976	0.14436	36.976	36.928	37.072	0	1254	49	0.8652351	0.029470205	0.8652351	350.87585	0	11.950928						196	7	3	NaN	NaN	NaN	0.00080915	1	13135	13135		114.61	80.169	1	26530			21782	3515	12589	12952	17266	17266					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.5873444876	1	1107.58734	1106.58007	1.4708	0.0016291	-0.39742	-0.00044018	1.0734	0.0011889	1107.5867438386776	36.976	0.16838	36.976	36.904	37.072	0	63	76	1.5811787	0.04414904	1.5811787	320.6086	0	8.951935						290	8	3	NaN	NaN	NaN	2.5768E-06	1	13136	13136		128.85	64.297	1	30104			21783	3515	12589	12952	17267	17267					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2973104771	2	554.29731	1106.58007	1.0449	0.00057921	-1.1002	-0.00060983	-0.055241	-3.062E-05	554.2971017575034	36.998	0.16816	37	36.904	37.072	0.0022507	1251	46	0.8670771	0.027623832	0.8655577	351.62283	0	11.202209						203	8	3	NaN	NaN	NaN	0.023074	1	12765	12765		68.108	33.67	1	21773			21784	3515	12589	12952	17268	17268					0.031041189710322215
QYPFPLPVF	9	Unmodified	_QYPFPLPVF_					0	0	0		ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	ENSG00000145414|ENST00000274054|NAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1107.5873444876	1	1107.58734	1106.58007	0.99969	0.0011072	-1.0185	-0.0011281	-0.018833	-2.0859E-05	1107.585664634524	36.998	0.14417	37	36.928	37.072	0.0022507	63	67	1.5811787	0.038849115	1.5796592	320.6086	0	7.877289						271	7	3	NaN	NaN	NaN	0.00012335	1	12766	12766		121.49	84.903	1	25555			21785	3515	12589	12952	17269	17269					0.031041189710322215
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7876412478	2	533.787641	1065.56073	2.4569	0.0013115	-1.0206	-0.00054481	1.4363	0.00076668	533.786548778008	21.97	0.31324	21.97	21.778	22.091	0	1251	79	0.8670771	0.047899425	0.8670771	351.78928	0	19.433655						827	14	5	NaN	NaN	NaN	0.032689	1	11371	11371		55.592	24.982	1	308370			21786	1043	12590	12953	17270	17270					0.030571626801247476
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7876412478	2	533.787641	1065.56073	1.3082	0.00069828	0.47817	0.00025524	1.7863	0.00095352	533.7874498907471	21.946	0.38546	21.932	21.812	22.197	-0.013895	1251	85	0.8670771	0.051584005	0.8655577	351.78928	0	20.928589						825	17	5	NaN	NaN	NaN	0.022082	1	11108	11108		69.363	32.061	1	274040			21787	1043	12590	12953	17271	17271					0.030571626801247476
QYPVIIHLIW	10	Unmodified	_QYPVIIHLIW_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3713410874501	2	641.371341	1280.72813	1.5345	0.0009842	-2.8387	-0.0018207	-1.3042	-0.00083646	641.3696862547245	33.02	0.31348	33.018	32.825	33.138	-0.0024796	1110	55	0.95342636	0.03298968	0.9519069	385.99237	0	13.355804						334	14	3	NaN	NaN	NaN	0.038747	1	17619	17619		55.947	35.499	1	39320			21788	702	12591	12954	17272	17272					0.09899430224891148
QYPVYWDHLEF	11	Unmodified	_QYPVYWDHLEF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.8458844082	2	748.845884	1495.67722	1.5466	0.0011582	-1.9441	-0.0014559	-0.39749	-0.00029766	748.8436261309174	30.27	0.21719	30.27	30.222	30.439	0	1035	55	0.99917877	0.032886803	0.99917877	403.89423	0	13.293701						185	10	2	NaN	NaN	NaN	0.25335	1	20566	20566		27.296	16.331	1	17431			21789	1057	12592	12955	17273	17273					-0.05079563610615878
QYPVYWDHLEF	11	Unmodified	_QYPVYWDHLEF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.8458844082	2	748.845884	1495.67722	1.7789	0.0013321	-1.8822	-0.0014094	-0.10328	-7.7344E-05	748.8447479629851	29.184	0.36195	29.184	29.087	29.449	0	1035	88	0.99917877	0.052969992	0.99917877	403.89423	0	21.411835						992	16	6	NaN	NaN	NaN	3.0505E-45	1	20567	20567		180.83	151.93	1	331130			21790	1057	12592	12955	17274	17274					-0.05079563610615878
QYPVYWDHLEF	11	Unmodified	_QYPVYWDHLEF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.8458844082	2	748.845884	1495.67722	1.7772	0.0013309	-1.5952	-0.0011945	0.18204	0.00013632	749.3458428802546	30.173	0.072422	30.173	30.125	30.198	0	1038	40	0.997351	0.023760498	0.997351	403.15543	0	9.604614						72	4	2	NaN	NaN	NaN	0.44296	1	20568	20568		20.513	14.083	1	5497.6			21791	1057	12592	12955	17275	17275					-0.05079563610615878
QYPVYWDHLEF	11	Unmodified	_QYPVYWDHLEF_					0	0	0		ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.8458844082	2	748.845884	1495.67722	1.7918	0.0013418	-2.6936	-0.0020171	-0.90176	-0.00067528	748.8434608800965	29.183	0.2896	29.175	29.103	29.393	-0.0077209	1035	88	0.99917877	0.052969992	0.9976593	403.89423	0	21.411865						896	13	5	NaN	NaN	NaN	2.8773999999999998E-28	1	19556	19556		155.24	132.16	1	324970			21792	1057	12592	12955	17276	17276					-0.05079563610615878
QYQFRNRR	8	Unmodified	_QYQFRNRR_					0	0	0		WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant;nc|ENSG00000162552|P56705-2|WNT4;ENSG00000162552|ENST00000290167|WNT4	WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant	WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.31013781415	2	584.310138	1166.60572	2.104	0.0012294	2.6812	0.0015666	4.7852	0.002796	584.3116476981586	29.691	0.16893	29.691	29.667	29.836	0	999	148	1.0210962	0.08941442	1.0210962	413.81946	0	36.237						664	8	4	NaN	NaN	NaN	0.84887	1	15367	15367		0.32989	0	1	107530			21793	4146	12593	12956	17277	17277					0.029084062660331256
QYQFRNRR	8	Unmodified						0	0	0		WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant;nc|ENSG00000162552|P56705-2|WNT4;ENSG00000162552|ENST00000290167|WNT4	WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant	WNT4|p.S176Efs*12|1|0.14|ENSG00000162552|chr1:22121273-22121274|-/TC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.310138	1166.60572	1.3279	0.00077592	3.4863	0.0020371	4.8142	0.002813	584.3122895380253	29.738	0.24128	29.731	29.683	29.924	-0.0070648	996	145	1.0229213	0.08754736	1.0214019	414.55914		35.480255	0.020165	0.00047365	0.00015287	NaN	0.32989	703	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106380			21794	4146	12593	12956							0.029084062660331256
QYQIIMTMI	9	Unmodified	_QYQIIMTMI_					0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7932204041501	2	570.79322	1139.57189	1.4172	0.00080895	-0.21895	-0.00012498	1.1983	0.00068397	570.7943937341126	32.563	0.21719	32.563	32.466	32.683	0	1194	73	0.902037	0.0441432	0.902037	365.6697	0	17.894867						207	10	3	NaN	NaN	NaN	0.10956	1	14431	14431		34.439	11.104	1	22562			21795	2900	12594	12957	17278	17278					0.007684806677616507
QYQIIMTMI	9	Unmodified	_QYQIIMTMI_					0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7932204041501	2	570.79322	1139.57189	0.68113	0.00038878	-2.8176	-0.0016083	-2.1365	-0.0012195	570.79079623888	32.562	0.12069	32.558	32.51	32.631	-0.0031052	1188	70	0.90571284	0.042297065	0.9041934	367.15982	0	17.146454						182	6	3	NaN	NaN	NaN	0.043119	1	13960	13960		49.833	22.044	1	23321			21796	2900	12594	12957	17279	17279					0.007684806677616507
QYQIIMTMI	9	Oxidation (M)	_QYQIIMTM(Oxidation (M))I_		QYQIIM(0.015)TM(0.985)I		QYQIIM(-18)TM(18)I	0	0	1		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7906777152001	2	578.790678	1155.5668	1.8738	0.0010846	-2.0924	-0.0012111	-0.21857	-0.00012651	578.7895921196606	28.363	0.072376	28.363	28.339	28.412	0	1191	64	0.90387505	0.038594007	0.90387505	366.3542	0	15.642761						152	4	3	NaN	NaN	NaN	0.043119	1	15011	15011		49.833	18.272	2	34031			21797	2900	12594	12958	17280	17280		335;336			-0.004758231948471803
QYQIIMTMI	9	2 Oxidation (M)	_QYQIIM(Oxidation (M))TM(Oxidation (M))I_		QYQIIM(1)TM(1)I		QYQIIM(87)TM(87)I	0	0	2		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.7881350262502	2	586.788135	1171.56172	1.7014	0.00099835	-1.4574	-0.00085519	0.24397	0.00014316	586.7880261975156	25.298	0.16887	25.286	25.189	25.358	-0.012011	1185	64	0.90755045	0.03859818	0.906031	367.78464	0	15.641907						249	8	3	NaN	NaN	NaN	0.011942	1	14992	14992		87.021	39.539	1	50434			21798	2900	12594	12959	17281	17281		335;336			-0.017201270574560112
QYQMIFSIW	9	Unmodified	_QYQMIFSIW_					0	0	0		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000523426.1_1_8:54669186-54714423:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.2969845136	2	608.296985	1214.57942	0.96751	0.00058853	-1.2526	-0.00076193	-0.28505	-0.0001734	608.2954329586346	36.254	0.14462	36.254	36.205	36.35	0	1191	58	0.90387505	0.034910858	0.90387505	366.14417	0	14.141785						189	7	4	NaN	NaN	NaN	0.030391	1	16836	16836		58.599	40.8	1	18846			21799	545	12595	12960	17282	17282					-0.019290437403242322
QYQMIFSIW	9	Unmodified	_QYQMIFSIW_					0	0	0		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000523426.1_1_8:54669186-54714423:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.2969845136	2	608.296985	1214.57942	1.0386	0.00063177	-1.223	-0.00074392	-0.18437	-0.00011215	608.2962283781587	36.252	0.16861	36.253	36.205	36.373	0.0011024	1188	49	0.90571284	0.02940017	0.9041934	366.88864	0	11.909515						178	8	4	NaN	NaN	NaN	0.089764	1	16166	16166		37.302	19.333	1	18786			21800	545	12595	12960	17283	17283					-0.019290437403242322
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8060309662001	2	582.806031	1163.59751	2.0831	0.001214	-2.5662	-0.0014956	-0.48313	-0.00028157	582.8044247462495	32.297	0.38608	32.297	32.225	32.611	0	1206	97	0.894683	0.05882591	0.894683	362.599	0	23.841064						809	17	4	NaN	NaN	NaN	0.0072287	1	15273	15273		98.041	24.908	1	643150			21801	3759;7960	12596	12961	17284	17284					0.02225414506051493
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8060309662001	2	582.806031	1163.59751	1.1063	0.00064479	-1.3788	-0.00080356	-0.27243	-0.00015877	582.8057287094699	33.359	0.096539	33.359	33.287	33.383	0	1209	61	0.892844	0.03676611	0.892844	361.85367	0	14.900665						123	5	2	NaN	NaN	NaN	0.12945	1	15274	15274		31.561	5.4461	1	14931			21802	3759;7960	12596	12961	17285	17285					0.02225414506051493
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8060309662001	2	582.806031	1163.59751	0.84069	0.00048996	-3.3677	-0.0019627	-2.5271	-0.0014728	582.8038395278708	33.406	0.19305	33.404	33.283	33.476	-0.0018501	1206	61	0.894683	0.03676611	0.89316356	362.599	0	14.900665						253	9	3	NaN	NaN	NaN	0.030669	1	14748	14748		58.235	18.082	1	25977			21803	3759;7960	12596	12961	17286	17286					0.02225414506051493
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.8060309662001	2	582.806031	1163.59751	1.686	0.00098262	-1.5712	-0.00091572	0.11479	6.6902E-05	582.805345674508	32.296	0.33789	32.292	32.22	32.558	-0.0037613	1203	76	0.8965218	0.045970082	0.89500237	363.3442	0	18.63086						816	15	5	NaN	NaN	NaN	0.011942	1	14749	14749		87.021	13.888	1	643200			21804	3759;7960	12596	12961	17287	17287					0.02225414506051493
QYQNYYAQW	9	Unmodified	_QYQNYYAQW_					0	0	0		nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.27509497855	2	632.275095	1262.53564	1.513	0.00095666	-3.2033	-0.0020254	-1.6903	-0.0010687	632.2735122186562	24.14	0.14489	24.14	24.092	24.237	0	1155	73	0.92591566	0.044038475	0.92591566	374.91235	0	17.831604						255	7	3	NaN	NaN	NaN	0.062072	1	18042	18042		41.785	32.039	1	50070			21805	5183	12597	12962	17288	17288					-0.08512936913120939
QYQNYYAQW	9	Unmodified	_QYQNYYAQW_					0	0	0		nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.27509497855	2	632.275095	1262.53564	1.4492	0.00091631	-4.8872	-0.0030901	-3.438	-0.0021738	632.2721830577947	24.164	0.21716	24.151	24.055	24.272	-0.012749	1152	82	0.92775106	0.049535275	0.9262317	375.65555	0	20.057312						331	10	4	NaN	NaN	NaN	0.056143	1	17262	17262		44.302	27.444	1	52845			21806	5183	12597	12962	17289	17289					-0.08512936913120939
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8247550356001	2	574.824755	1147.63496	1.8145	0.001043	-2.448	-0.0014072	-0.63345	-0.00036412	574.8231633729388	21.705	0.16856	21.705	21.681	21.85	0	1170	46	0.91673553	0.027552247	0.91673553	371.59702	0	11.168274						237	8	4	NaN	NaN	NaN	3.7692E-08	1	14737	14737		140.15	60.947	1	57243			21807	1499	12598	12963	17290	17290					0.0670450577167685
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8247550356001	2	574.824755	1147.63496	1.2773	0.00073425	-2.3321	-0.0013406	-1.0548	-0.00060632	574.8235115576881	21.729	0.21663	21.715	21.667	21.884	-0.013897	1170	49	0.91673553	0.029384315	0.9152161	371.59702	0	11.910889						232	10	4	NaN	NaN	NaN	0.03533	1	14242	14242		53.14	19.715	1	52830			21808	1499	12598	12963	17291	17291					0.0670450577167685
QYQQRAFGW	9	Unmodified	_QYQQRAFGW_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2857970506001	2	592.285797	1182.55704	0.83865	0.00049672	-0.65422	-0.00038749	0.18442	0.00010923	592.285518178238	20.549	0.14447	20.535	20.487	20.632	-0.014141	1245	94	0.87076044	0.057033777	0.869241	352.8373	0	23.110413						233	7	3	NaN	NaN	NaN	0.00010594	1	15314	15314		122.55	93.654	1	33409			21809	3021	12599	12964	17292	17292					-0.02693507093727021
QYQRFMRDNYP	11	Unmodified	_QYQRFMRDNYP_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.3513423143502	2	759.351342	1516.68813	1.7506	0.0013293	2.2373	0.0016989	3.9879	0.0030282	759.8539660434917	21.97	0.14456	21.97	21.946	22.091	0	1023	34	1.0064877	0.020096421	1.0064877	406.79703	0	8.122467						150	7	3	NaN	NaN	NaN	0.71564	1	20635	20635		6.4299	0	1	14241			21810	5144	12600	12965	17293	17293					-0.049544845079708466
QYSMEYFQF	9	Unmodified	_QYSMEYFQF_					0	0	0		USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	USP9X-BLVRB|1|fusion	USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.7604318318	2	621.760432	1241.50631	0.93401	0.00058073	-1.7648	-0.0010973	-0.83081	-0.00051657	621.7592782897156	30.68	0.14479	30.68	30.656	30.801	0	1125	79	0.9442611	0.047692895	0.9442611	382.41064	0	19.31488						213	7	3	NaN	NaN	NaN	0.030696	1	17555	17555		58.2	41.615	1	26645			21811	2416	12601	12966	17294	17294					-0.10478217253603361
QYSMEYFQF	9	Unmodified	_QYSMEYFQF_					0	0	0		USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	USP9X-BLVRB|1|fusion	USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.7604318318	2	621.760432	1241.50631	0.59165	0.00036786	-1.8899	-0.0011751	-1.2982	-0.0008072	621.7593054926862	30.679	0.21713	30.673	30.625	30.842	-0.0057545	1122	64	0.9460945	0.0385108	0.9445751	383.15317	0	15.596252						249	10	4	NaN	NaN	NaN	0.21199	1	16810	16810		24.562	11.559	1	27485			21812	2416	12601	12966	17295	17295					-0.10478217253603361
QYSMEYFQF	9	Oxidation (M)	_QYSM(Oxidation (M))EYFQF_		QYSM(1)EYFQF		QYSM(40)EYFQF	0	0	1		USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	USP9X-BLVRB|1|fusion	USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.75788914285	2	629.757889	1257.50123	1.6184	0.0010192	-0.049613	-3.1244E-05	1.5688	0.00098796	629.7578315930837	27.688	0.21717	27.688	27.639	27.857	0	1146	49	0.93142134	0.029355824	0.93142134	377.158	0	11.886993						249	10	4	NaN	NaN	NaN	0.070055	1	17938	17938		40.154	24.691	1	41533			21813	2416	12601	12967	17296	17296		270			-0.1172252111623493
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.74563904735	2	545.745639	1089.47673	1.317	0.00071872	0.28668	0.00015645	1.6036	0.00087517	545.7458623292564	29.015	0.28963	29.015	28.894	29.184	0	1269	73	0.8560222	0.044214845	0.8560222	347.2068	0	17.933777						302	13	3	NaN	NaN	NaN	0.048656	1	12357	12357		47.482	25.647	1	35279			21814	3307	12602	12968	17297	17297					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.4840016280998	1	1090.484	1089.47673	2.1636	0.0023593	0.28461	0.00031036	2.4482	0.0026697	1090.4846815776684	29.015	0.2655	29.015	28.918	29.184	0	129	112	1.5422925	0.06547928	1.5422925	312.7843	0	13.2795105						535	12	4	NaN	NaN	NaN	0.00019594	1	12358	12358		117.07	87.031	1	118980			21815	3307	12602	12968	17298	17298					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.74563904735	2	545.745639	1089.47673	1.1579	0.00063193	-1.031	-0.00056265	0.12695	6.9285E-05	545.7456248617987	29.014	0.16891	29.007	28.958	29.127	-0.0077209	1266	73	0.85786515	0.044210076	0.8563457	347.9543	0	17.931793						287	8	3	NaN	NaN	NaN	0.032826	1	12048	12048		55.413	32.079	1	46011			21816	3307	12602	12968	17299	17299					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.4840016280998	1	1090.484	1089.47673	1.1456	0.0012492	0.71557	0.00078032	1.8611	0.0020295	1090.4854697292417	29.014	0.28961	29.007	28.934	29.224	-0.0077209	129	88	1.5422925	0.051321507	1.540773	312.7843	0	10.408264						444	13	3	NaN	NaN	NaN	0.00065562	1	12050	12050		115.07	85.035	1	103690			21817	3307	12602	12968	17300	17300					-0.06443413207443882
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.27129269185	2	505.271293	1008.52803	1.1099	0.00056081	-1.165	-0.00058865	-0.055101	-2.7841E-05	505.2703190521786	31.718	0.1931	31.718	31.646	31.839	0	1245	85	0.87076044	0.051584005	0.87076044	353.5385	0	20.943665						303	9	3	NaN	NaN	NaN	0.026469	1	8925	8925		63.731	35.942	1	48078			21818	932	12603	12969	17301	17301					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.5353089171001	1	1009.53531	1008.52803	1.2652	0.0012772	-0.90492	-0.00091354	0.36026	0.00036369	1009.5344047770324	31.694	0.1931	31.694	31.646	31.839	0	177	109	1.5139546	0.06385493	1.5139546	307.3454	0	12.963104						592	9	4	NaN	NaN	NaN	6.5392E-05	1	8926	8926		125.02	66.421	1	116120			21819	932	12603	12969	17302	17302					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.27129269185	2	505.271293	1008.52803	0.44161	0.00022314	-0.57423	-0.00029014	-0.13262	-6.7009E-05	505.2710010046317	31.693	0.1931	31.688	31.64	31.833	-0.0044174	1242	106	0.87260187	0.06449741	0.8710824	354.28613	0	26.186676						350	9	3	NaN	NaN	NaN	0.030696	1	8753	8753		58.2	22.903	1	51766			21820	932	12603	12969	17303	17303					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5353089171001	1	1009.53531	1008.52803	0.99124	0.0010007	0.52813	0.00053317	1.5194	0.0015339	1009.534834600465	31.693	0.21723	31.688	31.64	31.857	-0.0044174	171	148	1.5174994	0.086835384	1.51598	308.06503	0	17.628326						599	10	4	NaN	NaN	NaN	6.5392E-05	1	8755	8755		125.02	54.42	1	115780			21821	932	12603	12969	17304	17304					0.024109555572863428
QYSRFSLENNF	11	Unmodified	_QYSRFSLENNF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.8307656602502	2	702.830766	1403.64698	1.4647	0.0010294	-0.89492	-0.00062898	0.56973	0.00040043	702.829791749427	22.67	0.21707	22.67	22.645	22.863	0	1083	58	0.9699114	0.034783065	0.9699114	392.2992	0	14.068665						302	10	3	NaN	NaN	NaN	1.2851E-07	1	20092	20092		99.51	62.279	1	62053			21822	2022	12604	12970	17305	17305					-0.03869922275771387
QYSRFSLENNF	11	Unmodified	_QYSRFSLENNF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.8307656602502	2	702.830766	1403.64698	1.1108	0.0007807	0.40803	0.00028677	1.5188	0.0010675	702.8309590926144	22.693	0.28928	22.68	22.583	22.872	-0.01354	1083	67	0.9699114	0.0402686	0.96839195	392.2992	0	16.287384						554	13	5	NaN	NaN	NaN	0.026113	1	19146	19146		58.769	27.094	1	82560			21823	2022	12604	12970	17306	17306					-0.03869922275771387
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8216810304	2	584.821681	1167.62881	1.4071	0.0008229	-3.5082	-0.0020517	-2.1011	-0.0012288	584.8197413905041	31.815	0.21722	31.815	31.766	31.983	0	1164	52	0.9204082	0.031215787	0.9204082	373.00986	0	12.650696						196	10	2	NaN	NaN	NaN	0.2961	1	15409	15409		19.164	10.873	1	37688			21824	5964	12605	12971	17307	17307					0.05169987540125476
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.8216810304	2	584.821681	1167.62881	0.69178	0.00040457	-2.0709	-0.0012111	-1.3791	-0.00080653	584.8201518009362	31.838	0.21722	31.833	31.737	31.954	-0.0044155	1158	73	0.92408	0.04408127	0.9225606	374.49792	0	17.864624						197	10	2	NaN	NaN	NaN	0.25548	1	14874	14874		21.771	8.034	1	39552			21825	5964	12605	12971	17308	17308					0.05169987540125476
QYTFVGDIF	9	Unmodified	_QYTFVGDIF_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5251381612998	1	1089.52514	1088.51786	1.7887	0.0019489	-0.23631	-0.00025746	1.5524	0.0016914	1089.524591302318	32.345	0.24131	32.345	32.201	32.442	0	90	82	1.5652816	0.0477165	1.5652816	317.4501	0	9.677246						338	11	3	NaN	NaN	NaN	2.212E-07	1	12311	12311		133.34	88.704	1	46628			21826	1400	12606	12972	17309	17309					-0.02285652167961416
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000174238|ENST00000313486|PITPNA;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.5487406171666	3	401.548741	1201.62439	1.9234	0.00077233	-2.4339	-0.00097733	-0.51052	-0.000205	401.54777439971605	13.805	0.24016	13.805	13.733	13.973	0	1461	43	0.7376554	0.025979817	0.7376554	448.26724	0	15.78772						347	11	3	NaN	NaN	NaN	0.094712	1	16525	16525		31.675	23.322	1	85225			21827	4935	12607	12973	17310	17310					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000174238|ENST00000313486|PITPNA;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.81947269245	2	601.819473	1201.62439	1.8779	0.0011301	-0.54586	-0.00032851	1.332	0.00080162	601.8186747620201	13.805	0.1921	13.805	13.757	13.949	0	1149	34	0.92958635	0.020187557	0.92958635	376.60498	0	8.178619						123	9	2	NaN	NaN	NaN	0.10363	1	16527	16527		35.296	23.248	1	14832			21828	4935	12607	12973	17311	17311					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000174238|ENST00000313486|PITPNA;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	ENST00000471825.1_1_22:28306950-28315179:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.5487406171666	3	401.548741	1201.62439	1.1672	0.00046867	-1.3305	-0.00053428	-0.16338	-6.5606E-05	401.54823130459107	14.284	0.11977	14.273	14.177	14.297	-0.011219	1458	52	0.7395112	0.03155893	0.73799175	449.395	0	19.1781						175	6	3	NaN	NaN	NaN	0.29681	1	15878	15878		16.858	8.402	1	24247			21829	4935	12607	12973	17312	17312					0.031645231171978594
QYTVVVEII	9	Unmodified	_QYTVVVEII_					0	0	0		ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.6033884823	1	1063.60339	1062.59611	1.1612	0.001235	0.021957	2.3353E-05	1.1831	0.0012584	1063.6031892667424	31.018	0.072399	31.018	30.994	31.066	0	108	58	1.5546752	0.033599496	1.5546752	315.39536	0	6.816284						111	4	2	NaN	NaN	NaN	0.024221	1	11251	11251		66.656	38.868	1	12592			21830	707	12608	12974	17313	17313					0.0673178041729443
QYTVVVEII	9	Unmodified	_QYTVVVEII_					0	0	0		ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.6033884823	1	1063.60339	1062.59611	1.2226	0.0013004	-0.23806	-0.0002532	0.98455	0.0010472	1063.6035118985708	31.017	0.096565	31.012	30.988	31.084	-0.0050716	105	55	1.5564433	0.03182614	1.5549239	315.75406	0	6.456543						122	5	2	NaN	NaN	NaN	0.58159	1	10996	10996		6.2502	0	1	14987			21831	707	12608	12974	17314	17314					0.0673178041729443
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		nc|ENSG00000134899|P28715-2|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.2776376675	2	582.277638	1162.54072	1.9005	0.0011066	-2.3804	-0.0013861	-0.47994	-0.00027946	582.276423397331	20.742	0.26506	20.742	20.694	20.959	0	1194	73	0.902037	0.044128895	0.902037	365.58334	0	17.884857						396	12	3	NaN	NaN	NaN	3.9799E-05	1	15226	15226		126.58	79.443	1	181920			21832	2904	12609	12975	17315	17315					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		nc|ENSG00000134899|P28715-2|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.2776376675	2	582.277638	1162.54072	1.4762	0.00085953	-0.996	-0.00057995	0.48016	0.00027959	582.2771351191207	20.742	0.19266	20.728	20.704	20.897	-0.014088	1194	67	0.902037	0.040451527	0.9005176	365.58334	0	16.39444						366	9	3	NaN	NaN	NaN	0.010878	1	14709	14709		90.252	32.052	1	175550			21833	2904	12609	12975	17316	17316					-0.03404633050490702
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.8169300035	2	567.81693	1133.61931	1.613	0.00091591	-1.9152	-0.0010875	-0.30215	-0.00017157	567.816491329501	19.346	0.048059	19.332	19.308	19.356	-0.014141	1206	31	0.894683	0.018389046	0.89316356	362.7113	0	7.4550476						49	3	2	NaN	NaN	NaN	0.18779	1	13776	13776		26.115	14.066	1	6499.4			21834	2395	12610	12976	17317	17317					0.05784219254610434
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5357028475999	1	1071.5357	1070.52843	2.176	0.0023317	-1.1974	-0.001283	0.97866	0.0010487	1071.5345562290984	29.836	0.24133	29.836	29.763	30.004	0	120	127	1.5476005	0.07436323	1.5476005	313.9303	0	15.084595						530	11	3	NaN	NaN	NaN	8.6802E-12	1	11579	11579		145.7	61.472	1	159820			21835	2964	12611	12977	17318	17318					-0.004016695135305781
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5357028475999	1	1071.5357	1070.52843	1.2877	0.0013798	-1.4028	-0.0015031	-0.11504	-0.00012327	1071.5339334530875	29.835	0.21716	29.828	29.779	29.996	-0.0070667	120	94	1.5476005	0.05485511	1.5460811	313.9303	0	11.12738						479	10	3	NaN	NaN	NaN	0.00015011	1	11285	11285		119.86	64.267	1	160560			21836	2964	12611	12977	17319	17319					-0.004016695135305781
QYVYWLHML	9	Unmodified	_QYVYWLHML_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.8128017533	2	626.812802	1251.61105	1.569	0.00098345	-2.9799	-0.0018679	-1.411	-0.0008844	626.8109724869217	30.511	0.24134	30.511	30.415	30.656	0	1119	79	0.9479278	0.047677517	0.9479278	383.8615	0	19.306885						586	11	7	NaN	NaN	NaN	0.056273	1	17817	17817		44.247	19.685	1	118210			21837	2976	12612	12978	17320	17320					-0.004690509863849002
QYVYWLHML	9	Unmodified	_QYVYWLHML_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.8128017533	2	626.812802	1251.61105	0.93778	0.00058781	-2.2619	-0.0014178	-1.3241	-0.00082997	626.8111466468192	30.534	0.26542	30.529	30.456	30.722	-0.0057545	1116	67	0.94976085	0.040333807	0.9482414	384.6038	0	16.333069						484	12	4	NaN	NaN	NaN	0.056273	1	17056	17056		44.247	27.389	1	105350			21838	2976	12612	12978	17321	17321					-0.004690509863849002
QYVYWLHML	9	Unmodified						0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.812802	1251.61105	2.097	0.0013144	-4.2935	-0.0026912	-2.1965	-0.0013768	627.3099920969227	30.752	0.096472	30.746	30.746	30.842	-0.0057545	1116	31	0.94976085	0.01832962	0.9482414	384.60382		7.422516	0.11728	-0.0014924	0.00015681	NaN	44.247	27	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1999.8			21839	2976	12612	12978							-0.004690509863849002
QYWEAQGWTF	10	Unmodified	_QYWEAQGWTF_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.29074504275	2	658.290745	1314.56694	1.1516	0.00075809	-2.2839	-0.0015035	-1.1323	-0.00074537	658.2896084849284	30.873	0.31374	30.873	30.777	31.091	0	1128	76	0.9424274	0.04583633	0.9424274	381.43466	0	18.551636						721	14	5	NaN	NaN	NaN	0.00020723	1	19020	19020		102.5	61.539	1	242830			21840	3095	12613	12979	17322	17322					-0.0777636387902021
QYWEAQGWTF	10	Unmodified	_QYWEAQGWTF_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.29074504275	2	658.290745	1314.56694	1.1354	0.0007474	-3.7682	-0.0024806	-2.6328	-0.0017332	658.2885207266402	32.513	0.072426	32.51	32.486	32.558	-0.0031052	1125	43	0.9442611	0.025666952	0.94274163	382.17682	0	10.388336						75	4	2	NaN	NaN	NaN	0.74854	1	18181	18181		4.7291	1.5175	1	6070.2			21841	3095	12613	12979	17323	17323					-0.0777636387902021
QYWEAQGWTF	10	Unmodified	_QYWEAQGWTF_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.29074504275	2	658.290745	1314.56694	1.4793	0.00097379	-2.8966	-0.0019068	-1.4173	-0.00093302	658.2886646224761	30.872	0.41031	30.866	30.77	31.18	-0.0057545	1125	73	0.9442611	0.044000506	0.94274163	382.17682	0	17.808594						733	18	5	NaN	NaN	NaN	0.0017553	1	18182	18182		86.792	54.34	1	239730			21842	3095	12613	12979	17324	17324					-0.0777636387902021
QYWEAQGWTF	10	Unmodified						0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	658.290745	1314.56694	1.0582	0.00069661	-0.34384	-0.00022635	0.71436	0.00047026	658.290966881676	32.394	0.072384	32.394	32.394	32.466	0	1131	46	0.94059354	0.027501822	0.94059354	380.6924		11.130981	-0.058216	0.002062	-0.001074	NaN	4.7291	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6760			21843	3095	12613	12979							-0.0777636387902021
QYYCQRAY	8	Unmodified	_QYYCQRAY_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENST00000607588.1_1_13:52743381-52745380:-|nuORF	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.73983377545	2	547.739834	1093.46511	1.049	0.0005746	5.8095	0.0031821	6.8585	0.0037567	548.244053826131	30.607	0.12066	30.601	30.577	30.698	-0.0057545	1254	79	0.8652351	0.047909796	0.86371565	350.92758	0	19.43155						244	6	5	NaN	NaN	NaN	0.80071	1	12208	12208		9.1232	0.87838	1	16594			21844	4402	12614	12980	17325	17325					-0.0778793350241358
QYYKDIAI	8	Unmodified	_QYYKDIAI_					0	0	0		tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.26875000289994	2	507.26875	1012.52295	1.5068	0.00076436	-5.2512	-0.0026638	-3.7444	-0.0018994	507.26577264289875	17.162	0.19187	17.149	17.1	17.292	-0.013569	1305	49	0.83389086	0.029530823	0.8323714	338.5511	0	11.989197						161	9	3	NaN	NaN	NaN	0.6053	1	8901	8901		24.961	8.3769	1	17282			21845	13892	12615	12981	17326	17326					0.01718651694648088
RAAGGGKG	8	Unmodified	_RAAGGGKG_					0	0	0			REV__ENST00000606270.1_1_5:74162011-74162203:+|nuORF	REV__ENST00000606270.1_1_5:74162011-74162203:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3739976687001	1	673.373998	672.366721	1.2248	0.00082476	4.0503	0.0027274	5.2751	0.0035521	673.3766546086714	28.87	0.14479	28.87	28.846	28.991	0	663	46	1.2243022	0.027053475	1.2243022	250.21294	0	5.5289764						130	7	2	NaN	NaN	NaN	0.84887	1	2654	2654		0.32989	0	1	13980	+		21846	12977	12616	12982	17327	17327					0.017432510347134667
RAANLYFLF	9	Unmodified	_RAANLYFLF_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.80583400095	2	557.805834	1113.59712	1.6466	0.00091848	0.99943	0.00055749	2.646	0.001476	557.8054500505502	29.956	0.14484	29.956	29.932	30.077	0	1209	58	0.892844	0.034948587	0.892844	362.0439	0	14.171509						148	7	3	NaN	NaN	NaN	0.23112	1	13441	13441		23.334	5.5355	1	17500			21847	3508	12617	12983	17328	17328					0.04486039576818257
RAANLYFLF	9	Unmodified	_RAANLYFLF_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.80583400095	2	557.805834	1113.59712	1.0233	0.00057078	-0.28892	-0.00016116	0.73433	0.00040961	557.8053553857374	30.004	0.14479	29.997	29.949	30.094	-0.0064106	1206	55	0.894683	0.0331074	0.89316356	362.78964	0	13.424896						135	7	2	NaN	NaN	NaN	0.39244	1	13057	13057		14.042	1.9929	1	17198			21848	3508	12617	12983	17329	17329					0.04486039576818257
RAARYYYYW	9	Unmodified	_RAARYYYYW_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.317097179	2	656.317097	1310.61964	0.95408	0.00062618	-1.0433	-0.00068477	-0.089268	-5.8588E-05	656.8173813328034	20.525	0.16845	20.511	20.415	20.584	-0.014141	1113	49	0.9515937	0.029324174	0.95007426	385.15665	0	11.8689575						158	8	2	NaN	NaN	NaN	0.36492	1	18117	18117		15.175	8.191	1	20543			21849	3242	12618	12984	17330	17330					-0.023243610255349267
RAARYYYYW	9	Unmodified	_RAARYYYYW_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.88049027486664	3	437.88049	1310.61964	0.81534	0.00035702	1.6711	0.00073174	2.4864	0.0010888	437.8814624501941	20.622	0.12056	20.608	20.584	20.704	-0.014088	1485	43	0.72280174	0.025999546	0.7212823	438.82645	0	15.784821						107	6	2	NaN	NaN	NaN	0.45297	1	18119	18119		6.9844	0	1	22837			21850	3242	12618	12984	17331	17331					-0.023243610255349267
RAAVGRRS	8	Unmodified	_RAAVGRRS_					0	0	0		ENST00000511689.5_1_5:134724614-134734957:-|nuORF	ENST00000511689.5_1_5:134724614-134734957:-|nuORF	ENST00000511689.5_1_5:134724614-134734957:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.76229216455	2	436.762292	871.510031	1.2655	0.00055273	-10.784	-0.0047098	-9.518	-0.0041571	436.7577433915886	20.213	0.19222	20.213	20.093	20.285	0	1461	49	0.7376554	0.02969122	0.7376554	300.12933	0	12.080444						226	9	3	NaN	NaN	NaN	0.76406	1	5682	5682		14.042	3.4366	1	47709			21851	7358	12619	12985	17332	17332					0.06913678145792801
RACRFFCVP	9	Unmodified	_RACRFFCVP_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.77041400985	2	549.770414	1097.52628	1.2312	0.00067686	1.4694	0.00080786	2.7006	0.0014847	549.7712412164256	21.152	0.26484	21.138	21.041	21.306	-0.014004	1509	76	0.70793515	0.046450496	0.7064157	287.11566	0	18.838837						495	12	3	NaN	NaN	NaN	0.67818	1	12407	12407		1.072	0	1	66199	+		21852	8957	12620	12986	17333	17333					-0.018587000039815393
RACRFFCVP	9	Unmodified						0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.770414	1097.52628	1.2312	0.00067686	1.4694	0.00080786	2.7006	0.0014847	549.7712412164256	21.152	0.26484	21.138	21.041	21.306	-0.014004	1509	76	0.70793515	0.046450496	0.7064157	287.11566		18.838837	0.089381	0.00017442	-0.00075972	NaN	1.072	495	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66199	+		21853	8957	12620	12986							-0.018587000039815393
RADDTFEAL	9	Unmodified	_RADDTFEAL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.24854587705	2	519.248546	1036.48254	1.4875	0.00077239	0.63776	0.00033116	2.1253	0.0011036	519.2480462142164	20.597	0.24077	20.597	20.501	20.742	0	1302	61	0.8357362	0.03690952	0.8357362	339.19507	0	14.980225						269	11	3	NaN	NaN	NaN	0.46215	1	10054	10054		11.17	2.2084	1	53744			21854	1435	12621	12987	17334	17334					-0.03424314695780595
RADDTFEAL	9	Unmodified	_RADDTFEAL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.24854587705	2	519.248546	1036.48254	1.1425	0.00059323	-0.03968	-2.0604E-05	1.1028	0.00057262	519.2479924129078	20.598	0.21689	20.584	20.511	20.728	-0.014088	1305	64	0.83389086	0.038736105	0.8323714	338.4461	0	15.721588						213	10	2	NaN	NaN	NaN	0.12866	1	9843	9843		31.675	8.5579	1	49885			21855	1435	12621	12987	17335	17335					-0.03424314695780595
RADESTYVL	9	Unmodified	_RADESTYVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.26419594125	2	527.264196	1052.51384	2.3592	0.0012439	-0.80037	-0.000422	1.5588	0.00082192	527.2636993563337	18.7	0.31198	18.7	18.652	18.964	0	1272	76	0.854179	0.046079576	0.854179	346.6111	0	18.698303						603	14	4	NaN	NaN	NaN	0.097143	1	10731	10731		36.235	2.8095	1	183400			21856	2006	12622	12988	17336	17336					-0.01031741661677188
RADESTYVL	9	Unmodified	_RADESTYVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.26419594125	2	527.264196	1052.51384	1.795	0.00094644	-0.77486	-0.00040856	1.0201	0.00053788	527.2637664119982	18.722	0.28813	18.708	18.66	18.948	-0.014059	1269	76	0.8560222	0.04607457	0.85450274	347.35904	0	18.696259						515	13	3	NaN	NaN	NaN	0.084037	1	10510	10510		38.131	4.4325	1	189470			21857	2006	12622	12988	17337	17337					-0.01031741661677188
RADQFEYVM	9	Unmodified	_RADQFEYVM_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7660485259499	2	579.766049	1157.51754	2.3116	0.0013402	-2.6748	-0.0015508	-0.36326	-0.00021061	579.764887976005	21.994	0.28936	21.994	21.874	22.163	0	1221	133	0.885486	0.08089435	0.885486	358.8937	0	32.78705						1037	13	6	NaN	NaN	NaN	0.054111	1	15058	15058		45.165	13.604	1	259810			21858	4267	12623	12989	17338	17338					-0.05491395159469903
RADQFEYVM	9	Unmodified	_RADQFEYVM_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7660485259499	2	579.766049	1157.51754	1.7043	0.00098809	-1.8652	-0.0010814	-0.16092	-9.3295E-05	579.7651741029478	21.994	0.28918	21.98	21.932	22.221	-0.013897	1221	91	0.885486	0.05518502	0.88396657	358.89368	0	22.366882						911	13	7	NaN	NaN	NaN	0.054111	1	14559	14559		45.165	15.567	1	256170			21859	4267	12623	12989	17339	17339					-0.05491395159469903
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(82)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7635058369999	2	587.763506	1173.51246	2.6267	0.0015439	-1.5613	-0.00091768	1.0654	0.00062619	587.7630281011844	18.125	0.3838	18.125	18.005	18.388	0	1218	85	0.8873258	0.051528275	0.8873258	359.58167	0	20.881409						862	17	5	NaN	NaN	NaN	0.013696	1	15590	15590		81.699	25.752	1	283650			21860	4267	12623	12990	17340	17340		459			-0.06735699022101471
RADQFEYVM	9	Oxidation (M)	_RADQFEYVM(Oxidation (M))_		RADQFEYVM(1)		RADQFEYVM(72)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7635058369999	2	587.763506	1173.51246	2.3626	0.0013886	-2.417	-0.0014206	-0.054441	-3.1999E-05	587.7623046055435	18.146	0.36001	18.132	17.988	18.348	-0.013948	1221	88	0.885486	0.05337143	0.88396657	358.8361	0	21.628326						772	16	4	NaN	NaN	NaN	0.01966	1	15034	15034		72.428	28.126	1	305360			21861	4267	12623	12990	17341	17341		459			-0.06735699022101471
RADSASPDL	9	Unmodified	_RADSASPDL_					0	0	0		ENST00000305097.5_1_3:152553477-152553909:+|nuORF	ENST00000305097.5_1_3:152553477-152553909:+|nuORF	ENST00000305097.5_1_3:152553477-152553909:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.2276134697	2	466.227613	930.440674	0.3641	0.00016975	-0.49329	-0.00022999	-0.12919	-6.0233E-05	466.2276811278331	15.076	0.24032	15.064	14.968	15.208	-0.011738	1311	40	0.83019954	0.023995101	0.8286801	337.45078	0	9.753265						185	11	3	NaN	NaN	NaN	0.25448	1	6475	6475		21.835	4.036	1	20467			21862	6421	12624	12991	17342	17342					-0.027328703842840696
RAEDLRNMPY	10	Unmodified	_RAEDLRNMPY_					0	0	0		nc|ENSG00000019186|Q07973-3|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.2082781608001	3	422.208278	1263.60301	1.4669	0.00061933	-6.9457	-0.0029325	-5.4788	-0.0023132	422.20567587146616	12.028	0.095986	12.028	11.98	12.076	0	1470	79	0.7320868	0.048300683	0.7320868	444.63583	0	29.335602						168	5	2	NaN	NaN	NaN	0.60686	1	18078	18078		11.561	8.2569	1	15583			21863	453	12625	12992	17343	17343					-0.018252299737696376
RAEDLRNMPY	10	Unmodified						0	0	0		nc|ENSG00000019186|Q07973-3|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	422.208278	1263.60301	0.93081	0.000393	-6.9808	-0.0029474	-6.05	-0.0025544	422.2050895028189	12.03	0.1439	12.022	11.95	12.094	-0.0081863	1467	70	0.7339432	0.042720556	0.7324238	445.76334		25.946503	-0.0030849	-2.9559E-05	0.00016848	NaN	11.561	210	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17924			21864	453	12625	12992							-0.018252299737696376
RAELDTIMF	9	Unmodified	_RAELDTIMF_					0	0	0			REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	REV__CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	365.8549533291667	3	365.854953	1094.54303	2.1558	0.0007887	-10.685	-0.0039091	-8.529	-0.0031204	365.8509565336403	13.901	0.07197	13.901	13.853	13.925	0	1518	34	0.7023569	0.020456016	0.7023569	427.28955	0	12.444702						45	4	2	NaN	NaN	NaN	0.29681	1	12606	12606		12.57	2.326	1	4289.5	+		21865	8197	12626	12993	17344	17344					-0.00045920637035123946
RAEMPSTL	8	Unmodified	_RAEMPSTL_					0	0	0			REV__nc|ENSG00000166578|Q96DY2-3|IQCD	REV__nc|ENSG00000166578|Q96DY2-3|IQCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4556783876002	1	904.455678	903.448402	1.5844	0.001433	-2.2812	-0.0020633	-0.69679	-0.00063022	904.4539027862988	27.326	0.048267	27.326	27.302	27.35	0	354	64	1.4090419	0.037449002	1.4090419	286.49554	0	7.6144104						121	3	3	NaN	NaN	NaN	0.78264	1	6141	6141		11.548	0.94349	1	9812.8	+		21866	10440	12627	12994	17345	17345					-0.00718434388352307
RAEMPSTL	8	Unmodified						0	0	0			REV__nc|ENSG00000166578|Q96DY2-3|IQCD	REV__nc|ENSG00000166578|Q96DY2-3|IQCD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	904.455678	903.448402	1.5844	0.001433	-2.2812	-0.0020633	-0.69679	-0.00063022	904.4539027862988	27.326	0.048267	27.326	27.302	27.35	0	354	64	1.4090419	0.037449002	1.4090419	286.49554		7.6144104	-0.0066356	0.00042384	0.00075972	NaN	11.548	121	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9812.8	+		21867	10440	12627	12994							-0.00718434388352307
RAFDLFNPN	9	Unmodified	_RAFDLFNPN_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2748980133001	2	547.274898	1092.53524	1.18	0.00064581	6.7008	0.0036672	7.8809	0.004313	547.2807232993134	21.055	0.12043	21.055	21.031	21.151	0	1245	67	0.87076044	0.040530264	0.87076044	353.17233	0	16.43869						203	6	3	NaN	NaN	NaN	0.58159	1	12503	12503		6.2502	0.55606	1	21556			21868	5231	12628	12995	17346	17346					-0.007323118422846164
RAFMNDPAM	9	Unmodified	_RAFMNDPAM_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000521266.1_1_5:158588592-158600998:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7362368415	2	526.736237	1051.45792	1.8308	0.00096436	-1.0981	-0.00057844	0.73267	0.00038592	526.7362991214655	18.892	0.096035	18.892	18.868	18.964	0	1323	34	0.8228144	0.020314455	0.8228144	333.8882	0	8.243378						79	5	2	NaN	NaN	NaN	0.56377	1	10671	10671		6.9844	2.2553	1	6515.8			21869	3536	12629	12996	17347	17347					-0.06574989374485085
RAFMNDPAM	9	Unmodified	_RAFMNDPAM_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000521266.1_1_5:158588592-158600998:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7362368415	2	526.736237	1051.45792	1.774	0.00093443	0.34138	0.00017982	2.1154	0.0011143	526.7359208768557	18.938	0.072063	18.924	18.9	18.972	-0.014059	1323	34	0.8228144	0.020314455	0.82129496	333.8882	0	8.243408						57	4	2	NaN	NaN	NaN	0.48181	1	10453	10453		10.36	3.497	1	5016.8			21870	3536	12629	12996	17348	17348					-0.06574989374485085
RAFVFMHKVW	10	Unmodified	_RAFVFMHKVW_					0	0	0		ENST00000595288.5_1_19:7692592-7692715:-|nuORF	ENST00000595288.5_1_19:7692592-7692715:-|nuORF	ENST00000595288.5_1_19:7692592-7692715:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.8553352700001	2	660.855335	1319.69612	1.4298	0.00094489	-6.826	-0.004511	-5.3962	-0.0035661	660.8505951962607	28.822	0.16895	28.822	28.774	28.943	0	1098	58	0.960755	0.0348168	0.960755	388.8368	0	14.091064						250	8	4	NaN	NaN	NaN	0.67523	1	19111	19111		9.746	3.8262	1	37107			21871	7751	12630	12997	17349	17349					0.04905739270088816
RAGAGDASGTR	11	Unmodified	_RAGAGDASGTR_					0	0	0		ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	340.17233286416666	3	340.172333	1017.49517	1.622	0.00055175	4.2727	0.0014535	5.8947	0.0020052	340.17369435559135	12.582	0.12013	12.573	12.501	12.621	-0.0088415	1503	34	0.711653	0.02044487	0.71013355	433.3515	0	12.449646						79	6	2	NaN	NaN	NaN	0.47586	1	9082	9082		10.822	0	1	7410.1			21872	5944	12631	12998	17350	17350					-0.012878585128646591
RAGESAEF	8	Unmodified	_RAGESAEF_					0	0	0			REV__ENSG00000059915|ENST00000020673|PSD	REV__ENSG00000059915|ENST00000020673|PSD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.4002719987001	1	866.400272	865.392996	2.3929	0.0020732	-9.5703	-0.0082917	-7.1774	-0.0062185	866.3916731323002	18.268	0.095835	18.268	18.245	18.34	0	480	40	1.3339561	0.023291588	1.3339561	271.40753	0	4.738922						67	5	2	NaN	NaN	NaN	0.81756	1	5607	5607		6.8632	0.613	1	4502.7	+		21873	8519	12632	12999	17351	17351					-0.04508524584468887
RAGGAIKV	8	Unmodified	_RAGGAIKV_					0	0	0		ENST00000380062.9_1_9:26956414-26962023:+|nuORF	ENST00000380062.9_1_9:26956414-26962023:+|nuORF	ENST00000380062.9_1_9:26956414-26962023:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4835481181002	1	771.483548	770.476272	-0.10817	-8.345E-05	4.2949	0.0033134	4.1867	0.00323	771.4861727546229	58.027	0.096161	58.026	57.93	58.026	-0.00050735	507	61	1.3178225	0.035865784	1.316303	268.64102	0	7.31131						115	5	2	NaN	NaN	NaN	0.84887	1	4294	4294		0.32989	0	1	9852.1			21874	6729	12633	13000	17352	17352					0.08185256654053319
RAGGGGGM	8	Unmodified	_RAGGGGGM_					0	0	0		ENST00000467087.5_2_4:26862323-26862563:+|nuORF	ENST00000467087.5_2_4:26862323-26862563:+|nuORF	ENST00000467087.5_2_4:26862323-26862563:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.3038691930001	1	662.303869	661.296593	1.4598	0.00096681	2.3349	0.0015464	3.7947	0.0025132	662.3055488031948	35.046	0.096539	35.046	34.998	35.094	-4.5776E-05	741	88	1.1773466	0.05245483	1.1758271	240.69685	0	10.723877						191	5	2	NaN	NaN	NaN	0.84887	1	2277	2277		0.32989	0	1	20064			21875	7121	12634	13001	17353	17353					-0.04760370625410815
RAGGGGGM	8	Unmodified						0	0	0		ENST00000467087.5_2_4:26862323-26862563:+|nuORF	ENST00000467087.5_2_4:26862323-26862563:+|nuORF	ENST00000467087.5_2_4:26862323-26862563:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	662.303869	661.296593	0.78118	0.00051738	2.9645	0.0019634	3.7457	0.0024808	662.3059158495371	35.023	0.072388	35.023	35.023	35.096	0	744	115	1.1755381	0.06870079	1.1755381	240.3271		14.045212	-0.01133	0.00017872	-0.00014458	NaN	0.32989	159	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15520			21876	7121	12634	13001							-0.04760370625410815
RAGGRLAP	8	Unmodified	_RAGGRLAP_					0	0	0			REV__ENST00000554988.1_1_14:20811304-20811436:-|nuORF	REV__ENST00000554988.1_1_14:20811304-20811436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.24066126544994	2	399.240661	796.46677	1.2424	0.00049603	-2.1435	-0.00085578	-0.90107	-0.00035975	399.2397431252016	28.508	0.1207	28.508	28.46	28.581	0	1326	112	0.8209676	0.06830847	0.8209676	334.51385	0	27.83319						171	6	2	NaN	NaN	NaN	0.84887	1	4714	4714		0.32989	0	1	11688	+		21877	12759	12635	13002	17354	17354					0.060394883685034984
RAGKKGGA	8	Unmodified	_RAGKKGGA_					0	0	0			REV__nc|ENSG00000113648|O75367|MACROH2A1	REV__nc|ENSG00000113648|O75367|MACROH2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.4474969628002	1	744.447497	743.44022	-0.21775	-0.0001621	7.8395	0.0058361	7.6218	0.005674	744.4531472795634	55.747	0.14434	55.746	55.722	55.866	-0.00059128	567	70	1.2819146	0.041349173	1.2803952	261.4873	0	8.434509						210	7	3	NaN	NaN	NaN	0.84945	1	3882	3882		0	0	1	38915	+		21878	9155	12636	13003	17355	17355					0.058237994771957347
RAGKKGGA	8	Unmodified	_RAGKKGGA_					0	0	0			REV__nc|ENSG00000113648|O75367|MACROH2A1	REV__nc|ENSG00000113648|O75367|MACROH2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.4474969628002	1	744.447497	743.44022	-0.20677	-0.00015393	7.9	0.0058811	7.6932	0.0057272	744.453518371157	56.539	0.38382	56.538	56.418	56.802	-0.00056458	582	55	1.2729256	0.0323689	1.2714062	259.65372	0	6.6026917						312	17	2	NaN	NaN	NaN	0.84945	1	3883	3883		0	0	1	43311	+		21879	9155	12636	13003	17356	17356					0.058237994771957347
RAGKKGGA	8	Unmodified	_RAGKKGGA_					0	0	0			REV__nc|ENSG00000113648|O75367|MACROH2A1	REV__nc|ENSG00000113648|O75367|MACROH2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.4474969628002	1	744.447497	743.44022	-0.14046	-0.00010456	8.2565	0.0061466	8.1161	0.006042	744.4538540739919	56.323	0.14399	56.322	56.226	56.37	-0.00056458	579	49	1.2747238	0.028766274	1.2732043	260.0205	0	5.867798						122	7	2	NaN	NaN	NaN	0.84945	1	3884	3884		0	0	1	10546	+		21880	9155	12636	13003	17357	17357					0.058237994771957347
RAHRRGGD	8	Unmodified	_RAHRRGGD_					0	0	0		ENST00000546893.5_1_12:46662692-46662812:-|nuORF	ENST00000546893.5_1_12:46662692-46662812:-|nuORF	ENST00000546893.5_1_12:46662692-46662812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.74717341660005	2	462.747173	923.479794	1.6873	0.00078081	0.57403	0.00026563	2.2614	0.0010464	462.7472680352823	13.757	0.072065	13.757	13.733	13.805	0	1416	46	0.76547134	0.027788818	0.76547134	311.17487	0	11.296539						64	4	2	NaN	NaN	NaN	0.84727	1	6472	6472		1.2418	0	1	5284.3			21881	7526	12637	13004	17358	17358					0.014993194806152133
RAKGAMGL	8	Unmodified	_RAKGAMGL_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.4556188081002	1	803.455619	802.448342	-0.13542	-0.0001088	2.5788	0.0020719	2.4434	0.0019631	803.4569634902138	48.377	0.14377	48.382	48.334	48.478	0.004818	378	52	1.3947657	0.0303514	1.3932463	284.12778	0	6.182892						123	7	2	NaN	NaN	NaN	0.84876	1	4689	4689		0.39566	0	1	11753			21882	2249	12638	13005	17359	17359					0.03921610402312581
RANMTAPVSQQ	11	Unmodified	_RANMTAPVSQQ_					0	0	0			REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.8009539758001	2	601.800954	1201.58736	1.5316	0.0009217	-9.4391	-0.0056804	-7.9075	-0.0047587	601.7949730807982	22.163	0.14475	22.163	22.115	22.26	0	1167	106	0.91857195	0.06426096	0.91857195	372.14288	0	26.03418						342	7	3	NaN	NaN	NaN	0.33431	1	16520	16520		24.4	1.2827	1	45436	+		21883	9212	12639	13006	17360	17360					-0.00537516490840062
RANMTAPVSQQ	11	Unmodified						0	0	0			REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.800954	1201.58736	1.5316	0.0009217	-9.4391	-0.0056804	-7.9075	-0.0047587	601.7949730807982	22.163	0.14475	22.163	22.115	22.26	0	1167	106	0.91857195	0.06426096	0.91857195	372.14288		26.03418	-0.0049893	-0.00078905	0.00075972	NaN	24.4	342	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45436	+		21884	9212	12639	13006							-0.00537516490840062
RANMTAPVSQQ	11	Unmodified						0	0	0			REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	REV__TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	601.800954	1201.58736	0.79589	0.00047897	-7.8275	-0.0047106	-7.0316	-0.0042316	601.7950640881893	22.187	0.19295	22.173	22.125	22.318	-0.013731	1167	88	0.91857195	0.053233266	0.9170525	372.14285		21.566498	0.0049893	0.0011507	-0.00075972	NaN	24.4	403	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48706	+		21885	9212	12639	13006							-0.00537516490840062
RAPAPAVP	8	Unmodified	_RAPAPAVP_					0	0	0			REV__TP53|p.A79Rfs*40|1|0.1|ENSG00000141510|chr17:7676123-7676135|CGGTGTAGGAGCT/-|frameshift_variant	REV__TP53|p.A79Rfs*40|1|0.1|ENSG00000141510|chr17:7676123-7676135|CGGTGTAGGAGCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.73213774159996	2	389.732138	777.449723	1.3232	0.00051568	-2.409	-0.00093888	-1.0859	-0.0004232	389.7307442131751	30.487	0.07238	30.487	30.463	30.535	0	1401	28	0.77473325	0.016667843	0.77473325	315.80554	0	6.794342						44	4	2	NaN	NaN	NaN	0.84692	1	4463	4463		1.4396	0	1	3084	+		21886	13380	12640	13007	17361	17361					0.052095677626994075
RAPPLALL	8	Unmodified	_RAPPLALL_					0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.5508994017999	1	850.550899	849.543623	1.8034	0.0015339	-7.488	-0.006369	-5.6846	-0.0048351	850.5445334659563	57.045	0.072102	57.045	57.021	57.093	0	285	58	1.4500183	0.03380692	1.4500183	295.1077	0	6.880371						108	4	3	NaN	NaN	NaN	0.84692	1	5381	5381		1.4396	0	1	16670	+		21887	10769	12641	13008	17362	17362					0.11283286864977526
RAPPLALL	8	Unmodified						0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	850.550899	849.543623	1.8034	0.0015339	-7.488	-0.006369	-5.6846	-0.0048351	850.5445334659563	57.045	0.072102	57.045	57.021	57.093	0	285	58	1.4500183	0.03380692	1.4500183	295.1077		6.880371	0.0012322	-0.00072796	-0.0010195	NaN	1.4396	108	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16670	+		21888	10769	12641	13008							0.11283286864977526
RAPPLALL	8	Unmodified						0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	850.550899	849.543623	-0.66096	-0.00056218	-5.4116	-0.0046028	-6.0726	-0.005165	850.5462594676259	57.043	0.072029	57.042	57.018	57.09	-0.00056458	279	70	1.4535767	0.040928483	1.4520572	295.83188		8.329773	-0.0012322	0.0010382	0.0010195	NaN	1.4396	127	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20955	+		21889	10769	12641	13008							0.11283286864977526
RAPSSFRNCRR	11	Unmodified	_RAPSSFRNCRR_					0	0	0		ENST00000579368.1_1_18:8707103-8707376:-|nuORF	ENST00000579368.1_1_18:8707103-8707376:-|nuORF	ENST00000579368.1_1_18:8707103-8707376:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.57043283309997	3	450.570433	1348.68947	1.5054	0.0006783	8.1985	0.003694	9.704	0.0043723	450.57465589554664	26.046	0.096571	26.046	26.022	26.119	0	1470	52	0.7320868	0.031555533	0.7320868	444.33286	0	19.152313						162	5	3	NaN	NaN	NaN	0.7072	1	19532	19532		3.0365	0.33232	1	16685			21890	7677	12642	13009	17363	17363					0.029071943714143345
RAPTALRIGH	10	Unmodified	_RAPTALRIGH_					0	0	0			REV__ENST00000453658.6_2_9:71869290-71869377:+|nuORF	REV__ENST00000453658.6_2_9:71869290-71869377:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.3252565621	2	546.325257	1090.63596	1.1748	0.00064183	0.19754	0.00010792	1.3724	0.00074975	546.3250087163761	24.574	0.14468	24.574	24.502	24.647	0	1365	43	0.7969414	0.025898278	0.7969414	323.23904	0	10.5043335						171	7	3	NaN	NaN	NaN	0.77928	1	12442	12442		0.69115	0.29548	1	24766	+		21891	12239	12643	13010	17364	17364					0.09426764931208709
RAQDGDFIF	9	Unmodified	_RAQDGDFIF_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7590807736	2	534.759081	1067.50361	1.9527	0.0010442	-2.6155	-0.0013986	-0.66277	-0.00035442	534.7577112375795	23.971	0.24128	23.971	23.923	24.164	0	1284	55	0.8468043	0.033200562	0.8468043	343.55627	0	13.469757						333	11	4	NaN	NaN	NaN	0.33202	1	11435	11435		16.858	5.3099	1	67266			21892	2856	12644	13011	17365	17365					-0.027443045962627366
RAQDGDFIF	9	Unmodified	_RAQDGDFIF_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7590807736	2	534.759081	1067.50361	1.2138	0.0006491	-1.4744	-0.00078847	-0.26061	-0.00013936	534.7581462187585	23.995	0.26537	23.982	23.91	24.175	-0.013048	1284	61	0.8468043	0.036889493	0.8452849	343.55624	0	14.966431						336	12	4	NaN	NaN	NaN	0.13602	1	11166	11166		30.61	5.6491	1	66829			21893	2856	12644	13011	17366	17366					-0.027443045962627366
RARGHRKR	8	Unmodified	_RARGHRKR_					0	0	0			REV__ENST00000518622.5_1_19:48715070-48715130:-|nuORF	REV__ENST00000518622.5_1_19:48715070-48715130:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	346.21643019666664	3	346.21643	1035.62746	1.6079	0.00055667	-2.1833	-0.00075588	-0.5754	-0.00019921	346.21563689291196	20.67	0.048189	20.67	20.646	20.694	0	1539	31	0.68933374	0.018609524	0.68933374	419.6626	0	11.329346						39	3	2	NaN	NaN	NaN	0.8439	1	10042	10042		1.9246	0.41924	1	3006	+		21894	12587	12645	13012	17367	17367					0.11107255805245586
RARKKGDSP	9	Unmodified	_RARKKGDSP_					0	0	0		ENST00000379287.3_1_6:13487499-13487736:-|nuORF	ENST00000379287.3_1_6:13487499-13487736:-|nuORF	ENST00000379287.3_1_6:13487499-13487736:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.79378925820004	2	507.793789	1013.57303	1.8702	0.00094968	3.0454	0.0015465	4.9157	0.0024961	508.29561783157163	51.349	0.095837	51.349	51.349	51.445	0	1197	55	0.9001988	0.033100247	0.9001988	365.4663	0	13.438171						81	5	2	NaN	NaN	NaN	0.67818	1	9136	9136		1.072	0	1	4977.7			21895	6719	12646	13013	17368	17368					0.06678199143186703
RASRCCLLLV	10	Unmodified	_RASRCCLLLV_					0	0	0		nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-6|PDE2A	nc|ENSG00000186642|O00408-6|PDE2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3177283432001	2	567.317728	1132.6209	0.71663	0.00040656	-5.156	-0.0029251	-4.4394	-0.0025185	567.3146694155417	35.601	0.24115	35.602	35.529	35.77	0.00053024	1224	58	0.883646	0.034956157	0.88212657	358.24063	0	14.171631						349	11	4	NaN	NaN	NaN	0.41164	1	13747	13747		23.118	5.3186	1	99983			21896	5482	12647	13014	17369	17369					0.059898137473737734
RAVAGGAA	8	Unmodified	_RAVAGGAA_					0	0	0			REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3787486955999	1	672.378749	671.371472	0.99253	0.00066736	-6.0236	-0.0040501	-5.0311	-0.0033828	672.3747800890973	41.57	0.072144	41.57	41.498	41.57	0	1185	31	0.90755045	0.018373132	0.90755045	185.48332	0	3.755066						44	4	2	NaN	NaN	NaN	0.84876	1	2633	2633		0.39566	0	1	3044	+		21897	12349	12648	13015	17370	17370					0.022641351774609575
RAVAGGAA	8	Unmodified						0	0	0			REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	672.378749	671.371472	0.99253	0.00066736	-6.0236	-0.0040501	-5.0311	-0.0033828	672.3747800890973	41.57	0.072144	41.57	41.498	41.57	0	1185	31	0.90755045	0.018373132	0.90755045	185.48332		3.755066	0	0	0	NaN	0.39566	44	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3044	+		21898	12349	12648	13015							0.022641351774609575
RAVEVDPSL	9	Unmodified	_RAVEVDPSL_					0	0	0		ENSG00000169372|ENST00000332896|CRADD	ENSG00000169372|ENST00000332896|CRADD	ENSG00000169372|ENST00000332896|CRADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.26928131915	2	493.269281	984.52401	2.3101	0.0011395	-0.66744	-0.00032923	1.6427	0.00081028	493.26870252976664	18.508	0.071903	18.508	18.484	18.556	0	1320	58	0.824661	0.035088718	0.824661	334.93146	0	14.251099						93	4	3	NaN	NaN	NaN	0.21199	1	8037	8037		24.562	2.727	1	8949.5			21899	4670	12649	13016	17371	17371					0.031128660635772576
RAVEVDPSL	9	Unmodified						0	0	0		ENSG00000169372|ENST00000332896|CRADD	ENSG00000169372|ENST00000332896|CRADD	ENSG00000169372|ENST00000332896|CRADD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.269281	984.52401	1.5292	0.00075428	-1.4109	-0.00069594	0.11829	5.8349E-05	493.2690342287961	18.53	0.095936	18.516	18.492	18.588	-0.01395	1323	52	0.8228144	0.031395137	0.82129496	334.1815		12.750977	0.0036552	-0.00025727	-0.001683	NaN	24.562	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10206			21900	4670	12649	13016							0.031128660635772576
RCAPGPPRPL	10	Unmodified	_RCAPGPPRPL_					0	0	0		ENST00000421671.6_1_6:33754529-33756808:-|nuORF	ENST00000421671.6_1_6:33754529-33756808:-|nuORF	ENST00000421671.6_1_6:33754529-33756808:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.29511052665	2	532.295111	1062.57567	1.3477	0.00071738	1.0218	0.00054389	2.3695	0.0012613	532.2962849774408	18.602	0.14397	18.588	18.516	18.66	-0.014059	1254	127	0.8652351	0.077350914	0.86371565	351.05453	0	31.38385						230	7	2	NaN	NaN	NaN	0.68669	1	10993	10993		8.962	0.71716	1	30044			21901	6920	12650	13017	17372	17372					0.04688331276474855
RCCWDEPLR	9	Unmodified	_RCCWDEPLR_					0	0	0		ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.1795540039999	3	393.179554	1176.51683	1.5944	0.0006269	-4.341	-0.0017068	-2.7466	-0.0010799	393.5120943691243	31.91	0.072376	31.906	31.882	31.954	-0.0037613	1491	25	0.7190863	0.014863372	0.71756685	437.08862	0	9.034515						37	4	2	NaN	NaN	NaN	0.67696	1	15115	15115		1.1768	0.8423	1	2528.7			21902	5931	12651	13018	17373	17373					-0.06436513080188888
RCGGGGPP	8	Unmodified	_RCGGGGPP_					0	0	0			REV__chr12:56784133-56784853|342|14.69|0.25|5.86|+|0|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|11	REV__chr12:56784133-56784853|342|14.69|0.25|5.86|+|0|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.66339786189997	2	350.663398	699.312243	1.2302	0.0004314	-8.7146	-0.0030559	-7.4844	-0.0026245	350.66083924288614	30.656	0.096548	30.656	30.608	30.704	0	1497	46	0.71537006	0.027876318	0.71537006	292.1703	0	11.385193						113	5	3	NaN	NaN	NaN	0.84876	1	3208	3208		0.39566	0	1	14010	+		21903	8212	12652	13019	17374	17374					-0.04944084108365132
RCHESFVY	8	Unmodified	_RCHESFVY_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.7345514323001	2	520.734551	1039.45455	1.7663	0.00091978	6.8805	0.0035829	8.6468	0.0045027	521.2385669894545	30.149	0.096539	30.149	30.125	30.222	0	1305	49	0.83389086	0.029533982	0.83389086	338.43338	0	11.986328						126	5	4	NaN	NaN	NaN	0.83211	1	10174	10174		4.9097	0	1	8120	+		21904	9257	12653	13020	17375	17375					-0.06359916156816325
RCHKMNLGW	9	Unmodified	_RCHKMNLGW_					0	0	0			REV__ENST00000489193.1_1_3:86062505-86063063:+|nuORF	REV__ENST00000489193.1_1_3:86062505-86063063:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7787703582002	2	572.77877	1143.54299	1.01	0.00057851	6.454	0.0036967	7.464	0.0042752	572.7829942011238	35.07	0.14481	35.07	35.046	35.191	-4.5776E-05	1224	58	0.883646	0.034948587	0.88212657	358.19943	0	14.166962						93	7	2	NaN	NaN	NaN	0.60063	1	14099	14099		5.4659	1.4973	1	6839.9	+		21905	12449	12654	13021	17376	17376					-0.02304199117997996
RCLPCAHFPP	10	Unmodified	_RCLPCAHFPP_					0	0	0			REV__nc|ENSG00000105982|Q9H0A6-2|RNF32	REV__nc|ENSG00000105982|Q9H0A6-2|RNF32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7756963530001	2	570.775696	1139.53684	0.77113	0.00044014	-3.8369	-0.00219	-3.0658	-0.0017499	571.274866414135	21.007	0.14445	20.993	20.945	21.089	-0.014086	1224	67	0.883646	0.040473342	0.88212657	358.21448	0	16.407196						278	7	3	NaN	NaN	NaN	0.71736	1	13953	13953		6.8632	1.1691	1	22789	+		21906	8979	12655	13022	17377	17377					-0.027347173495400057
RCNFQTVEFYQ	11	Unmodified	_RCNFQTVEFYQ_					0	0	0			REV__ENSG00000204442|ENST00000375915|NALF1	REV__ENSG00000204442|ENST00000375915|NALF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.8271687263001	2	717.827169	1433.63978	1.4199	0.0010193	-0.78078	-0.00056046	0.63915	0.0004588	717.82726702439	27.736	0.096495	27.736	27.736	27.833	0	1062	58	0.9827221	0.03474188	0.9827221	397.39957	0	14.049133						45	5	2	NaN	NaN	NaN	0.74794	1	20294	20294		4.3102	0	1	3281	+		21907	11240	12656	13023	17378	17378					-0.05968978147870985
RCVHDRFE	8	Unmodified	_RCVHDRFE_					0	0	0			REV__ENST00000507414.1_1_5:7892894-7893736:+|nuORF	REV__ENST00000507414.1_1_5:7892894-7893736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2508999882501	2	531.2509	1060.48725	0.60506	0.00032144	-4.0204	-0.0021358	-3.4153	-0.0018144	531.7496135517393	30.221	0.19303	30.214	30.142	30.335	-0.0064106	1290	55	0.84311575	0.033196986	0.8415963	342.08862	0	13.469482						139	9	2	NaN	NaN	NaN	0.81251	1	10861	10861		7.5404	1.2902	1	12741	+		21908	12541	12657	13024	17379	17379					-0.040577090339638744
RCVLYRAESK	10	Unmodified	_RCVLYRAESK_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.82951445	2	612.829514	1223.64448	0.63835	0.0003912	-8.0775	-0.0049501	-7.4392	-0.0045589	612.8250510868223	14.764	0.16819	14.752	14.752	14.92	-0.011738	1164	52	0.9204082	0.031219184	0.91888875	372.81046	0	12.645294						152	8	3	NaN	NaN	NaN	0.6772	1	16381	16381		9.6116	0.69255	1	15598	+		21909	8245	12658	13025	17380	17380					0.041599507855153206
RCVLYRAESK	10	Unmodified						0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.829514	1223.64448	0.63835	0.0003912	-8.0775	-0.0049501	-7.4392	-0.0045589	612.8250510868223	14.764	0.16819	14.752	14.752	14.92	-0.011738	1164	52	0.9204082	0.031219184	0.91888875	372.81046		12.645294	0.017345	0.00045612	-0.00075972	NaN	9.6116	152	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15598	+		21910	8245	12658	13025							0.041599507855153206
RCWTYLTGVIL	11	Unmodified	_RCWTYLTGVIL_					0	0	0		ENSG00000147099|ENST00000373573|HDAC8;ENST00000470998.1_1_X:71550718-71682242:-|nuORF;nc|ENSG00000147099|Q9BY41-4|HDAC8	ENSG00000147099|ENST00000373573|HDAC8	ENSG00000147099|ENST00000373573|HDAC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8577405732001	2	662.857741	1323.70093	1.6463	0.0010913	6.6839	0.0044305	8.3302	0.0055218	662.8627542669042	40.006	0.3372	40.012	39.819	40.156	0.0060463	1167	70	0.91857195	0.04224229	0.9170525	371.75278	0	17.095764						484	15	4	NaN	NaN	NaN	0.76488	1	18302	18302		2.8895	0.55133	1	83970			21911	3583	12659	13026	17381	17381					0.05202578622197507
RDALAQEYLM	10	Oxidation (M)	_RDALAQEYLM(Oxidation (M))_		RDALAQEYLM(1)		RDALAQEYLM(59)	0	0	1		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2977127951	2	613.297713	1224.58087	1.2509	0.00076716	-2.4349	-0.0014933	-1.1841	-0.00072618	613.2967796386993	19.804	0.12013	19.804	19.78	19.9	0	1185	43	0.90755045	0.025725186	0.90755045	367.59927	0	10.419861						188	6	4	NaN	NaN	NaN	0.031913	1	17089	17089		58.769	40.97	1	20565			21912	742	12660	13027	17382	17382		78			-0.022434544422367253
RDALAQEYLM	10	Oxidation (M)	_RDALAQEYLM(Oxidation (M))_		RDALAQEYLM(1)		RDALAQEYLM(45)	0	0	1		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2977127951	2	613.297713	1224.58087	0.9675	0.00059336	-0.66915	-0.00041039	0.29834	0.00018297	613.2978227886233	19.827	0.14432	19.813	19.765	19.909	-0.014141	1188	43	0.90571284	0.025727928	0.9041934	366.85495	0	10.42099						191	7	4	NaN	NaN	NaN	0.10967	1	16405	16405		44.633	18.519	1	23013			21913	742	12660	13027	17383	17383		78			-0.022434544422367253
RDAPFIWR	8	Unmodified	_RDAPFIWR_					0	0	0		ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	354.19440922139995	3	354.194409	1059.5614	2.6189	0.0009276	6.9324	0.0024554	9.5513	0.003383	354.1969047880042	18.29	0.095974	18.276	18.228	18.324	-0.01395	1506	34	0.70979416	0.020447075	0.7082747	431.99094	0	12.444397						67	5	2	NaN	NaN	NaN	0.73961	1	10841	10841		12.57	4.9821	1	6918.5			21914	7661	12661	13028	17384	17384					0.03400002119838064
RDAVFGLGN	9	Unmodified	_RDAVFGLGN_					0	0	0		ENSG00000277149|ENST00000620995|TYW1B	ENSG00000277149|ENST00000620995|TYW1B	ENSG00000277149|ENST00000620995|TYW1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.74851608730006	2	474.748516	947.482479	1.5193	0.00072129	-0.29376	-0.00013946	1.2255	0.00058183	474.7482048527691	15.798	0.23983	15.798	15.774	16.014	0	1335	46	0.8154261	0.027713597	0.8154261	331.3591	0	11.26178						264	11	4	NaN	NaN	NaN	0.44082	1	7017	7017		12.049	0.50025	1	35077			21915	6193	12662	13029	17385	17385					0.00663730094913717
RDCYPCTL	8	Unmodified	_RDCYPCTL_					0	0	0			REV__nc|ENSG00000148516|P37275-3|ZEB1	REV__nc|ENSG00000148516|P37275-3|ZEB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.70968774	2	485.709688	969.404823	2.0451	0.00099331	4.4212	0.0021474	6.4662	0.0031407	485.7120206908366	23.417	0.1688	23.417	23.345	23.513	0	1338	67	0.81357855	0.04067087	0.81357855	330.50137	0	16.52179						218	8	3	NaN	NaN	NaN	0.79607	1	7576	7576		9.746	0.62279	1	23388	+		21916	9980	12663	13030	17386	17386					-0.08110367157155451
RDGGACDA	8	Unmodified	_RDGGACDA_					0	0	0			REV__ENST00000530591.5_1_11:126225904-126276042:+|nuORF	REV__ENST00000530591.5_1_11:126225904-126276042:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.2991777455999	1	764.299178	763.291901	0.75397	0.00057626	-1.477	-0.0011288	-0.72299	-0.00055258	764.2978914678055	35.144	0.24134	35.144	35.096	35.337	0	1119	58	0.9479278	0.034828126	0.9479278	193.26901	0	7.100952						255	11	3	NaN	NaN	NaN	0.84945	1	4254	4254		0	0	1	32643	+		21917	12647	12664	13031	17387	17387					-0.09921299558845931
RDGPELLL	8	Unmodified	_RDGPELLL_					0	0	0			REV__nc|ENSG00000101665|O15105-2|SMAD7	REV__nc|ENSG00000101665|O15105-2|SMAD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5149078260002	1	912.514908	911.507631	1.0137	0.00092506	4.167	0.0038025	5.1808	0.0047275	912.5197231024462	33.671	0.0965	33.67	33.645	33.742	-0.0018463	300	67	1.4411188	0.039171934	1.4395994	292.97873	0	7.963623						125	5	2	NaN	NaN	NaN	0.5868	1	6139	6139		26.115	2.7805	1	11427	+		21918	8863	12665	13032	17388	17388					0.048337848974938424
RDGPELLL	8	Unmodified						0	0	0			REV__nc|ENSG00000101665|O15105-2|SMAD7	REV__nc|ENSG00000101665|O15105-2|SMAD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	912.514908	911.507631	1.0137	0.00092506	4.167	0.0038025	5.1808	0.0047275	912.5197231024462	33.671	0.0965	33.67	33.645	33.742	-0.0018463	300	67	1.4411188	0.039171934	1.4395994	292.97873		7.963623	-0.013622	3.2217E-05	0.0001305	NaN	26.115	125	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11427	+		21919	8863	12665	13032							0.048337848974938424
RDGSSAAG	8	Unmodified	_RDGSSAAG_					0	0	0		ENST00000347262.8_1_19:38746857-38747118:-|nuORF	ENST00000347262.8_1_19:38746857-38747118:-|nuORF	ENST00000347262.8_1_19:38746857-38747118:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3271070556	1	720.327107	719.319831	1.1103	0.00079979	-3.2602	-0.0023484	-2.1498	-0.0015486	720.3249127523059	28.242	0.096584	28.233	28.185	28.281	-0.0089779	615	55	1.2531329	0.03241384	1.2516136	255.7716	0	6.6158752						107	5	2	NaN	NaN	NaN	0.84207	1	3511	3511		3.5732	0	1	9287.3			21920	6557	12666	13033	17389	17389					-0.051056533071005106
RDGSSAAG	8	Unmodified						0	0	0		ENST00000347262.8_1_19:38746857-38747118:-|nuORF	ENST00000347262.8_1_19:38746857-38747118:-|nuORF	ENST00000347262.8_1_19:38746857-38747118:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	720.327107	719.319831	1.4701	0.0010589	-2.6868	-0.0019354	-1.2167	-0.00087643	720.3247115377758	28.243	0.12068	28.243	28.194	28.315	0	615	55	1.2531329	0.03241384	1.2531329	255.77159		6.6158752	0.0048299	0.00021396	0.00075972	NaN	3.5732	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8998.9			21921	6557	12666	13033							-0.051056533071005106
RDINRYCKE	9	Unmodified	_RDINRYCKE_					0	0	0		ENSG00000060339|ENST00000265872|CCAR1;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENST00000398676.3_1_10:70532822-70546470:+|nuORF	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7956716326499	2	598.795672	1195.57679	1.7307	0.0010363	5.6346	0.003374	7.3653	0.0044103	599.801421158084	25.732	0.048235	25.732	25.684	25.732	0	1176	76	0.9130621	0.045910537	0.9130621	369.9317	0	18.600891						136	3	3	NaN	NaN	NaN	0.41766	1	16330	16330		13.003	1.8325	1	20545			21922	636	12667	13034	17390	17390					-0.013174991453070106
RDLRVGEKLM	10	Unmodified	_RDLRVGEKLM_					0	0	0			REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8451645142001	2	608.845165	1215.67578	1.2782	0.0007782	-0.99363	-0.00060497	0.28452	0.00017323	608.8449832462508	19.156	0.047989	19.156	19.132	19.18	0	1098	34	0.960755	0.020150542	0.960755	389.18134	0	8.162567						57	3	2	NaN	NaN	NaN	0.77144	1	16889	16889		2.5994	0.49688	1	7158.1	+		21923	11105	12668	13035	17391	17391					0.07656523819628092
RDLRVGEKLM	10	Unmodified	_RDLRVGEKLM_					0	0	0			REV__nc|ENSG00000196482|P62508-2|ESRRG	REV__nc|ENSG00000196482|P62508-2|ESRRG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.232535165	3	406.232535	1215.67578	1.5979	0.00064911	-1.6922	-0.00068742	-0.094311	-3.8312E-05	406.23194965868373	19.226	0.072084	19.212	19.164	19.236	-0.014141	1434	52	0.75435036	0.03151101	0.7528309	458.35257	0	19.146484						76	4	2	NaN	NaN	NaN	0.77144	1	16215	16215		1.1021	0	1	6822	+		21924	11105	12668	13035	17392	17392					0.07656523819628092
RDMEYDTREP	10	Unmodified	_RDMEYDTREP_					0	0	0			REV__ENSG00000100209|ENST00000216027|HSCB	REV__ENSG00000100209|ENST00000216027|HSCB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.8593146231	3	437.859315	1310.55611	1.6214	0.00070995	0.66383	0.00029066	2.2852	0.0010006	437.8600728370083	13.925	0.095992	13.925	13.901	13.997	0	1485	46	0.72280174	0.027867317	0.72280174	438.82666	0	16.918762						95	5	3	NaN	NaN	NaN	0.77144	1	18952	18952		1.1021	0	1	6697.1	+		21925	8794	12669	13036	17393	17393					-0.08674134315583615
RDNSSFDKD	9	Unmodified	_RDNSSFDKD_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.8282318037	3	361.828232	1082.46287	1.8686	0.00067612	2.0631	0.00074649	3.9317	0.0014226	362.1632980781706	29.135	0.048269	29.127	29.127	29.175	-0.0077229	1533	40	0.6930556	0.024185777	0.6915362	421.68933	0	14.71582						53	3	2	NaN	NaN	NaN	0.47587	1	11757	11757		9.6116	3.9175	1	4521.4			21926	562	12670	13037	17394	17394					-0.07506690706509289
RDPAPPVV	8	Unmodified	_RDPAPPVV_					0	0	0			REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.7427024279	2	425.742702	849.470852	1.0292	0.00043817	-6.3447	-0.0027012	-5.3155	-0.002263	425.7403782700519	32.948	0.048225	32.945	32.921	32.969	-0.0024757	1356	43	0.8024889	0.025878608	0.8009695	326.63934	0	10.533447						58	3	2	NaN	NaN	NaN	0.78967	1	5245	5245		10.605	0	1	5962.2	+		21927	11718	12671	13038	17395	17395					0.040095330715644195
RDPAPPVV	8	Unmodified	_RDPAPPVV_					0	0	0			REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	REV__ENST00000320442.8_1_12:58014065-58016599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.7427024279	2	425.742702	849.470852	0.75845	0.00032291	-4.9963	-0.0021271	-4.2379	-0.0018042	425.7399769177558	33.116	0.09647	33.114	33.066	33.162	-0.0024757	1356	52	0.8024889	0.03143257	0.8009695	326.6393	0	12.794098						83	5	2	NaN	NaN	NaN	0.81756	1	5246	5246		6.8632	0	1	8106.5	+		21928	11718	12671	13038	17396	17396					0.040095330715644195
RDPVPFKP	8	Unmodified	_RDPVPFKP_					0	0	0		ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.27162704285	2	478.271627	954.528701	2.2846	0.0010927	-2.5105	-0.0012007	-0.2259	-0.00010804	478.27050076192535	18.82	0.26399	18.82	18.7	18.964	0	1536	121	0.69119483	0.07438952	0.69119483	280.84644	0	30.225952						726	12	4	NaN	NaN	NaN	0.7718	1	7200	7200		13.003	0.74314	1	177980			21929	6738	12672	13039	17397	17397					0.0496179499699565
RDPVPFKP	8	Unmodified	_RDPVPFKP_					0	0	0		ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.27162704285	2	478.271627	954.528701	2.1449	0.0010259	-0.46416	-0.000222	1.6808	0.00080387	478.2709113928861	18.82	0.28798	18.82	18.7	18.988	0	1326	73	0.8209676	0.044320166	0.8209676	333.57574	0	18.008179						368	13	3	NaN	NaN	NaN	0.78546	1	7201	7201		11.17	1.4243	1	77972			21930	6738	12672	13039	17398	17398					0.0496179499699565
RDQERFGR	8	Unmodified	_RDQERFGR_					0	0	0		SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2732209916	2	532.273221	1062.53189	0.3984	0.00021206	3.982	0.0021195	4.3804	0.0023316	532.274701255422	33.551	0.072411	33.549	33.501	33.573	-0.0018463	1287	46	0.8449601	0.027656734	0.84344065	342.82846	0	11.221252						78	4	2	NaN	NaN	NaN	0.81756	1	10980	10980		6.8632	0.613	1	5925.8			21931	3912	12673	13040	17399	17399					0.003124381036968771
RDSDLDICMT	10	Unmodified	_RDSDLDICMT_					0	0	0		nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7522808362	2	584.752281	1167.49001	1.1529	0.00067414	3.9481	0.0023086	5.1009	0.0029828	584.7548464320391	29.569	0.24127	29.562	29.466	29.707	-0.0070667	1197	64	0.9001988	0.03861493	0.8986794	364.82016	0	15.649292						287	11	3	NaN	NaN	NaN	0.507	1	14855	14855		19.164	2.5794	1	40531			21932	2888	12674	13041	17400	17400					-0.08703666482006156
RDVLVFWRKN	10	Unmodified	_RDVLVFWRKN_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.9226894405666	3	444.922689	1331.74624	1.3278	0.00059075	-6.7935	-0.0030226	-5.4657	-0.0024318	444.9196398064217	23.658	0.26502	23.658	23.538	23.803	0	1413	37	0.7673241	0.022232234	0.7673241	465.77988	0	13.495361						246	12	3	NaN	NaN	NaN	0.75556	1	19286	19286		4.2489	2.8649	1	45965	+		21933	9882	12675	13042	17401	17401					0.09363565199578261
RDVLVFWRKN	10	Unmodified						0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	444.922689	1331.74624	1.3278	0.00059075	-6.7935	-0.0030226	-5.4657	-0.0024318	444.9196398064217	23.658	0.26502	23.658	23.538	23.803	0	1413	37	0.7673241	0.022232234	0.7673241	465.77988		13.495361	0	0	0	NaN	4.2489	246	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45965	+		21934	9882	12675	13042							0.09363565199578261
RDWVLPVL	8	Unmodified	_RDWVLPVL_					0	0	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.29510213914995	2	499.295102	996.575651	1.0892	0.00054381	6.3883	0.0031896	7.4775	0.0037335	499.299521146763	20.453	0.096218	20.439	20.415	20.511	-0.014143	1290	37	0.84311575	0.022136092	0.8415963	342.36966	0	8.988953						126	5	4	NaN	NaN	NaN	0.67765	1	8284	8284		20.449	3.8645	1	13779	+		21935	11460	12676	13043	17402	17402					0.07722654548115315
RDYDMILE	8	Unmodified	_RDYDMILE_					0	0	0			REV__MAP9|p.D325Y|1|0.25|ENSG00000164114|chr4:155360245-155360245|C/A|missense_variant	REV__MAP9|p.D325Y|1|0.25|ENSG00000164114|chr4:155360245-155360245|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.74732445655	2	527.747324	1053.4801	0.32156	0.0001697	3.1151	0.001644	3.4366	0.0018137	527.7486231844462	33.599	0.14478	33.597	33.573	33.718	-0.0018501	1263	37	0.85970795	0.02211219	0.8581885	348.8505	0	8.972626						149	7	3	NaN	NaN	NaN	0.78264	1	10552	10552		11.548	0.37812	1	17132	+		21936	13066	12677	13044	17403	17403					-0.04450486425071176
RDYHDCMN	8	Unmodified	_RDYHDCMN_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.19747582175	2	527.197476	1052.3804	1.7832	0.0009401	-10.027	-0.0052863	-8.244	-0.0043462	527.6937318921596	14.069	0.14411	14.069	14.021	14.165	0	1311	58	0.83019954	0.035084903	0.83019954	336.88123	0	14.236877						153	7	3	NaN	NaN	NaN	0.84455	1	10713	10713		2.7852	0.32367	1	8244			21937	2686	12678	13045	17404	17404					-0.1436962731067979
RECVFREQ	8	Unmodified	_RECVFREQ_					0	0	0		ENSG00000196468|ENST00000439435|FGF16	ENSG00000196468|ENST00000439435|FGF16	ENSG00000196468|ENST00000439435|FGF16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7585578448501	2	533.758558	1065.50256	2.2611	0.0012069	-0.0034861	-1.8607E-06	2.2577	0.001205	533.7583287408802	18.892	0.14404	18.892	18.796	18.94	0	1230	31	0.8799654	0.01840496	0.8799654	357.01855	0	7.467224						100	7	2	NaN	NaN	NaN	0.78967	1	11360	11360		10.605	0.24481	1	6765.9			21938	5627	12679	13046	17405	17405					-0.027568422367949097
REEPIEWEF	9	Unmodified	_REEPIEWEF_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.79057786725	2	617.790578	1233.5666	1.5973	0.00098678	1.6253	0.0010041	3.2225	0.0019908	617.7918246068505	26.046	0.14482	26.035	25.987	26.131	-0.011135	1206	49	0.894683	0.029422462	0.89316356	362.35794	0	11.916473						156	7	3	NaN	NaN	NaN	0.13196	1	16635	16635		31.198	13.228	1	15122			21939	6132	12680	13047	17406	17406					-0.0408378359886683
REEREEKRRRQ	11	Unmodified	_REEREEKRRRQ_					0	0	0		TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant;ENSG00000159450|ENST00000614923|TCHH	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.42729283695	2	786.427293	1570.84003	1.5678	0.001233	0.18904	0.00014867	1.7569	0.0013817	786.4275508663205	27.133	0.048237	27.133	27.109	27.157	0	945	55	1.0539193	0.03278792	1.0539193	425.83487	0	13.247894						66	3	2	NaN	NaN	NaN	0.75376	1	20722	20722		3.9281	0.66711	1	5971.8			21940	4028	12681	13048	17407	17407					0.07744632563913001
REFCEVCQQF	10	Unmodified	_REFCEVCQQF_					0	0	0			REV__TTC27|p.E545Q|1|0.33|ENSG00000018699|chr2:32758472-32758472|G/C|missense_variant	REV__TTC27|p.E545Q|1|0.33|ENSG00000018699|chr2:32758472-32758472|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.7760902835	2	644.77609	1287.53763	1.7225	0.0011106	-0.22147	-0.0001428	1.501	0.00096783	644.7753740735059	29.569	0.21714	29.562	29.49	29.707	-0.0070667	1131	106	0.94059354	0.06420547	0.93907416	380.77554	0	25.992004						563	10	4	NaN	NaN	NaN	0.5917	1	17725	17725		15.463	1.0377	1	96674	+		21941	13644	12682	13049	17408	17408					-0.09463967491160474
REFCEVCQQF	10	Unmodified						0	0	0			REV__TTC27|p.E545Q|1|0.33|ENSG00000018699|chr2:32758472-32758472|G/C|missense_variant	REV__TTC27|p.E545Q|1|0.33|ENSG00000018699|chr2:32758472-32758472|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	644.77609	1287.53763	1.7225	0.0011106	-0.22147	-0.0001428	1.501	0.00096783	644.7753740735059	29.569	0.21714	29.562	29.49	29.707	-0.0070667	1131	106	0.94059354	0.06420547	0.93907416	380.77554		25.992004	-0.0039531	0.00059956	0.0001573	NaN	15.463	563	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96674	+		21942	13644	12682	13049							-0.09463967491160474
REGAITFTW	9	Unmodified	_REGAITFTW_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.77727352675	2	540.777274	1079.53999	1.9228	0.0010398	-1.7019	-0.00092037	0.2209	0.00011946	540.7760833962758	25.25	0.21713	25.25	25.153	25.371	0	1287	112	0.8449601	0.068183005	0.8449601	342.75937	0	27.658539						270	10	2	NaN	NaN	NaN	0.054111	1	11959	11959		45.165	3.3804	1	55455			21943	2022	12683	13050	17409	17409					0.003405723004561878
REHDDEMFDR	10	Unmodified	_REHDDEMFDR_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.28058267445	2	675.280583	1348.54661	0.78152	0.00052774	-1.4589	-0.00098515	-0.67736	-0.00045741	675.2799097528828	28.532	0.096508	28.523	28.451	28.547	-0.0083485	1116	100	0.94976085	0.060536623	0.9482414	384.302	0	24.494934						238	5	5	NaN	NaN	NaN	0.6772	1	18650	18650		9.6116	0	1	35204	+		21944	13080	12684	13051	17410	17410					-0.11371902601126749
REIEFSQF	8	Unmodified	_REIEFSQF_					0	0	0			REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2614562870501	2	528.261456	1054.50836	1.3966	0.00073775	0.074585	3.94E-05	1.4712	0.00077715	528.2612328368557	17.258	0.19186	17.244	17.172	17.364	-0.013567	1263	70	0.85970795	0.042402327	0.8581885	348.84613	0	17.205719						203	9	2	NaN	NaN	NaN	0.55996	1	10602	10602		27.789	0.4926	1	20388	+		21945	8452	12685	13052	17411	17411					-0.016714204534537203
REIEGRAI	8	Unmodified	_REIEGRAI_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.26961567015	2	472.269616	942.524678	0.80164	0.00037859	-1.7731	-0.00083737	-0.97144	-0.00045878	472.26863601994114	12.868	0.047997	12.868	12.868	12.916	0	1347	37	0.8080346	0.022179246	0.8080346	328.38016	0	9.013519						48	3	2	NaN	NaN	NaN	0.71739	1	6887	6887		17.97	2.507	1	4364.7			21946	1986	12686	13053	17412	17412					0.051117055032818826
REKWEKERSWH	11	Unmodified	_REKWEKERSWH_					0	0	0		ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.8973055895001	2	785.897306	1569.78006	1.8273	0.0014361	0.76727	0.000603	2.5946	0.0020391	785.8983722978782	30.318	0.096516	30.318	30.27	30.366	0	999	46	1.0210962	0.027383566	1.0210962	412.57513	0	11.064362						85	5	3	NaN	NaN	NaN	0.76654	1	20721	20721		2.5994	0.49688	1	5920.9			21947	2489	12687	13054	17413	17413					0.017959419006956523
RELDAAEDP	9	Unmodified	_RELDAAEDP_					0	0	0			REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.23817815599995	2	508.238178	1014.4618	1.1883	0.00060393	4.1325	0.0021003	5.3207	0.0027042	508.7421833474896	35.046	0.096516	35.046	35.022	35.119	-4.5776E-05	1311	55	0.83019954	0.03322929	0.8286801	337.04376	0	13.4904175						93	5	3	NaN	NaN	NaN	0.55027	1	8969	8969		7.5404	0.67717	1	6037.3	+		21948	10717	12688	13055	17414	17414					-0.04484905075435108
RELDAAEDP	9	Unmodified						0	0	0			REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.238178	1014.4618	1.0039	0.00051023	1.8583	0.00094448	2.8623	0.0014547	508.7402018248748	35.048	0.072388	35.048	35.023	35.096	0	1311	46	0.83019954	0.027689636	0.83019954	337.04376		11.241394	0.00073672	-0.001041	0.00075972	NaN	7.5404	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5986.7	+		21949	10717	12688	13055							-0.04484905075435108
RELDAAEDP	9	Unmodified						0	0	0			REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.238178	1014.4618	1.1883	0.00060393	4.1325	0.0021003	5.3207	0.0027042	508.7421833474896	35.046	0.096516	35.046	35.022	35.119	-4.5776E-05	1311	55	0.83019954	0.03322929	0.8286801	337.04376		13.4904175	-0.00073672	0.0012706	-0.00075972	NaN	7.5404	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6037.3	+		21950	10717	12688	13055							-0.04484905075435108
RELSEPTMYH	10	Unmodified	_RELSEPTMYH_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.7953372816501	2	631.795337	1261.57612	1.4338	0.00090587	-5.9806	-0.0037785	-4.5468	-0.0028727	632.2923612935014	20.477	0.096172	20.477	20.405	20.501	0	1176	52	0.9130621	0.031219184	0.9130621	369.71088	0	12.641052						93	5	2	NaN	NaN	NaN	0.77665	1	18026	18026		1.3312	0.4053	1	6327.6			21951	5579	12689	13056	17415	17415					-0.04420338584986894
REMGSIHT	8	Unmodified	_REMGSIHT_					0	0	0			REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.7267264002	2	465.726726	929.4389	0.77476	0.00036083	-9.3182	-0.0043397	-8.5435	-0.0039789	465.72258020076316	12.438	0.072025	12.429	12.405	12.477	-0.0088415	1380	34	0.7876915	0.020351946	0.78617203	320.17764	0	8.2725525						57	4	2	NaN	NaN	NaN	0.76633	1	6444	6444		13.737	1.1492	1	4758.3	+		21952	11959	12690	13057	17416	17416					-0.02864202673890759
REMGSIHT	8	Unmodified						0	0	0			REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	465.726726	929.4389	0.77139	0.00035926	-8.8441	-0.0041189	-8.0727	-0.0037597	465.7225478843024	12.412	0.047913	12.412	12.388	12.436	0	1380	37	0.7876915	0.02220571	0.7876915	320.17764		9.026093	-0.0084779	0.00025204	0.00075972	NaN	13.737	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6177.4	+		21953	11959	12690	13057							-0.02864202673890759
REMGSIHT	8	Unmodified						0	0	0			REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	REV__ENST00000379958.2_1_7:92733638-92733683:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.726726	929.4389	0.77476	0.00036083	-9.3182	-0.0043397	-8.5435	-0.0039789	465.72258020076316	12.438	0.072025	12.429	12.405	12.477	-0.0088415	1380	34	0.7876915	0.020351946	0.78617203	320.17764		8.2725525	0.0084779	-0.00018957	-0.00075972	NaN	13.737	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4758.3	+		21954	11959	12690	13057							-0.02864202673890759
REMSPLDMH	9	Unmodified	_REMSPLDMH_					0	0	0			REV__ENST00000372621.8_1_1:41477634-41477730:+|nuORF	REV__ENST00000372621.8_1_1:41477634-41477730:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2522510464502	2	558.252251	1114.48995	1.5022	0.00083859	-2.2091	-0.0012332	-0.70695	-0.00039465	558.2517986047238	14.812	0.096093	14.8	14.776	14.872	-0.011738	1218	31	0.8873258	0.018396974	0.8858064	359.8028	0	7.4598083						78	5	3	NaN	NaN	NaN	0.66529	1	13068	13068		2.1763	0	1	4934.6	+		21955	11913	12691	13058	17417	17417					-0.0627162169132589
REMTALHQRN	10	Unmodified	_REMTALHQRN_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.21565563599995	3	419.215656	1254.62514	1.9509	0.00081784	4.8086	0.0020159	6.7595	0.0028337	419.2179035715625	15.987	0.071891	15.975	15.951	16.023	-0.012611	1440	58	0.7506418	0.035248756	0.7491224	455.94043	0	21.410156						83	4	2	NaN	NaN	NaN	0.77024	1	17124	17124		1.2289	0.34431	1	9363.1	+		21956	12091	12692	13059	17418	17418					0.00800994494625229
RENEAMYELV	10	Unmodified	_RENEAMYELV_					0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2951701061501	2	627.29517	1252.57579	0.93912	0.00058911	0.040156	2.519E-05	0.97928	0.0006143	627.7976556550179	31.041	0.14481	31.036	31.012	31.157	-0.0050716	1152	61	0.92775106	0.03669083	0.9262317	375.68784	0	14.857758						112	7	2	NaN	NaN	NaN	0.71559	1	17076	17076		6.9844	1.0646	1	14097	+		21957	8742	12693	13060	17419	17419					-0.0403975830483887
RENEAMYELV	10	Unmodified						0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.29517	1252.57579	0.86383	0.00054188	-3.1931	-0.002003	-2.3293	-0.0014612	627.2922508308462	31.018	0.072422	31.018	31.018	31.091	0	1149	55	0.92958635	0.03302884	0.92958635	376.431		13.374847	-0.0090028	-0.0023886	0.0016773	NaN	6.9844	103	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11720	+		21958	8742	12693	13060							-0.0403975830483887
RENEAMYELV	10	Unmodified						0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.29517	1252.57579	0.93912	0.00058911	0.040156	2.519E-05	0.97928	0.0006143	627.7976556550179	31.041	0.14481	31.036	31.012	31.157	-0.0050716	1152	61	0.92775106	0.03669083	0.9262317	375.68784		14.857758	0.0090028	0.0016678	-0.0016773	NaN	6.9844	112	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14097	+		21959	8742	12693	13060							-0.0403975830483887
RENTLLKTL	9	Unmodified	_RENTLLKTL_					0	0	0		nc|ENSG00000157514|Q99576-5|TSC22D3;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000157514|Q99576-5|TSC22D3	nc|ENSG00000157514|Q99576-5|TSC22D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.3271305490501	2	544.327131	1086.63971	2.6103	0.0014209	-6.0549	-0.0032959	-3.4446	-0.001875	544.3253545109972	18.074	0.14405	18.06	18.036	18.18	-0.013786	1245	28	0.87076044	0.016574323	0.869241	353.19626	0	6.7228394						42	7	2	NaN	NaN	NaN	0.6532	1	11945	11945		3.2116	0.61216	1	3760.3			21960	3959	12694	13061	17420	17420					0.09985389914436382
REQHMMAVAK	10	Unmodified	_REQHMMAVAK_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.80244241975	2	600.802442	1199.59033	1.6622	0.00099862	-9.7128	-0.0058355	-8.0507	-0.0048369	600.796335588015	23.272	0.1688	23.272	23.224	23.393	0	1236	94	0.876284	0.05701524	0.876284	355.0174	0	23.099121						183	8	3	NaN	NaN	NaN	0.70677	1	16462	16462		7.5876	0.72439	1	19538	+		21961	10430	12695	13062	17421	17421					-0.001479646376992605
REQHMMAVAK	10	Unmodified						0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.802442	1199.59033	1.6622	0.00099862	-9.7128	-0.0058355	-8.0507	-0.0048369	600.796335588015	23.272	0.1688	23.272	23.224	23.393	0	1236	94	0.876284	0.05701524	0.876284	355.0174		23.099121	-0.13799	0.00084568	0.0016802	NaN	7.5876	183	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19538	+		21962	10430	12695	13062							-0.001479646376992605
REQKKHHHHH	10	Unmodified	_REQKKHHHHH_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3559423013002	2	687.355942	1372.69733	2.1373	0.0014691	5.1348	0.0035295	7.2721	0.0049985	687.3605623705869	25.274	0.048281	25.274	25.25	25.298	0	921	88	1.0684869	0.0527426	1.0684869	432.26498	0	21.337463						99	3	3	NaN	NaN	NaN	0.78133	1	19829	19829		0.19249	0.031377	1	6113.2			21963	3345	12696	13063	17422	17422					0.02589089683237944
REQKLTVQR	9	Unmodified	_REQKLTVQR_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.5631612165667	3	386.563161	1156.66765	0.9358	0.00036175	-1.7262	-0.00066727	-0.79035	-0.00030552	386.5634742276703	12.82	0.048045	12.82	12.796	12.844	0	1476	28	0.72837335	0.016713142	0.72837335	442.82156	0	10.160889						40	3	2	NaN	NaN	NaN	0.48464	1	15048	15048		10.244	1.9662	1	3006.1			21964	2489	12697	13064	17423	17423					0.09558712894522614
RERAQRERF	9	Unmodified	_RERAQRERF_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.33942656985	2	624.339427	1246.6643	1.7814	0.0011122	1.4745	0.00092059	3.2559	0.0020328	624.3402454639091	17.021	0.048012	17.021	16.997	17.045	0	1131	34	0.94059354	0.020176709	0.94059354	380.90802	0	8.170868						57	3	2	NaN	NaN	NaN	0.59509	1	17691	17691		5.6942	0	1	4893.8	+		21965	9979	12698	13065	17424	17424					0.050834628405027615
RERAQRERF	9	Unmodified						0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.339427	1246.6643	1.7814	0.0011122	1.4745	0.00092059	3.2559	0.0020328	624.3402454639091	17.021	0.048012	17.021	16.997	17.045	0	1131	34	0.94059354	0.020176709	0.94059354	380.90802		8.170868	-0.02767	-2.9385E-06	-0.00015721	NaN	5.6942	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4893.8	+		21966	9979	12698	13065							0.050834628405027615
RERAQRERF	9	Unmodified						0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.339427	1246.6643	1.9019	0.0011874	1.4811	0.0009247	3.383	0.0021121	624.3391563099598	17.09	0.096104	17.077	17.053	17.149	-0.013294	1128	31	0.9424274	0.018339515	0.94090796	381.65067		7.4268494	0.02767	5.273E-06	0.00015721	NaN	5.6942	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3652	+		21967	9979	12698	13065							0.050834628405027615
RERHEVNR	8	Unmodified	_RERHEVNR_					0	0	0			REV__RBM27|p.S846Ffs*34|1|0.35|ENSG00000091009|chr5:146269428-146269429|-/T|frameshift_variant	REV__RBM27|p.S846Ffs*34|1|0.35|ENSG00000091009|chr5:146269428-146269429|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5766136554	1	1095.57661	1094.56934	2.5549	0.0027991	-7.4173	-0.0081262	-4.8624	-0.0053271	1095.5707653292557	25.539	0.072428	25.528	25.503	25.576	-0.0116	102	46	1.5582114	0.026520252	1.556692	315.9944	0	5.3781433						69	4	2	NaN	NaN	NaN	0.80692	1	12283	12283		8.2903	0.045466	1	4817.4	+		21968	8730	12699	13066	17425	17425					0.02583529369326243
RERIGHRYI	9	Unmodified	_RERIGHRYI_					0	0	0		ENST00000403291.1_1_6:160134476-160134596:-|nuORF	ENST00000403291.1_1_6:160134476-160134596:-|nuORF	ENST00000403291.1_1_6:160134476-160134596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.56338411723345	3	400.563384	1198.66832	1.4868	0.00059554	6.8551	0.0027459	8.3418	0.0033414	400.5659578061513	18.986	0.096117	18.972	18.924	19.02	-0.014059	1461	46	0.7376554	0.027837038	0.73613596	448.27972	0	16.91681						106	5	2	NaN	NaN	NaN	0.53317	1	15784	15784		7.6826	3.0651	1	12843			21969	6837	12700	13067	17426	17426					0.07693552334239939
RERNEEINTI	10	Unmodified	_RERNEEINTI_					0	0	0		tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3283901468001	2	637.32839	1272.64223	1.5237	0.00097108	1.7153	0.0010932	3.239	0.0020643	637.3303195209803	29.087	0.19306	29.087	28.967	29.16	0	1110	67	0.95342636	0.040329456	0.95342636	386.0185	0	16.3284						169	9	3	NaN	NaN	NaN	0.72369	1	18277	18277		6.4299	0	1	11761			21970	13984	12701	13068	17427	17427					0.01681193581430307
RERTEERKEK	10	Unmodified	_RERTEERKEK_					0	0	0			REV__ENST00000537363.5_1_19:10670171-10670590:-|nuORF	REV__ENST00000537363.5_1_19:10670171-10670590:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.86821379905	2	680.868214	1359.72187	1.5903	0.0010828	-8.1794	-0.0055691	-6.589	-0.0044862	680.8606317749329	20.598	0.072271	20.584	20.559	20.632	-0.014088	1080	25	0.9717421	0.014644682	0.97022265	393.1635	0	5.9252014						70	4	3	NaN	NaN	NaN	0.77144	1	18777	18777		2.5994	0.49688	1	4626.9	+		21971	9464	12702	13069	17428	17428					0.05640260255404428
RESGDELM	8	Unmodified	_RESGDELM_					0	0	0			REV__ENSG00000166295|ENST00000299381|ANAPC16	REV__ENSG00000166295|ENST00000299381|ANAPC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4091221255001	1	936.409122	935.401846	1.9843	0.0018581	-11.791	-0.011041	-9.8062	-0.0091827	936.39645484374	22.887	0.096464	22.887	22.863	22.959	0	354	40	1.4090419	0.02319014	1.4090419	286.3487	0	4.7127686						58	5	2	NaN	NaN	NaN	0.67765	1	6721	6721		20.449	2.6497	1	4168.5	+		21972	10426	12703	13070	17429	17429					-0.06843919010304944
RESLYAHH	8	Unmodified	_RESLYAHH_					0	0	0		nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF	nc|ENSG00000198089|A8K8P3-5|SFI1	nc|ENSG00000198089|A8K8P3-5|SFI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7515900925	2	506.75159	1011.48863	1.7915	0.00090784	6.0819	0.003082	7.8733	0.0039898	506.75414970992387	34.468	0.048229	34.467	34.467	34.515	-0.0006485	1308	31	0.83204526	0.01845473	0.8305259	337.80637	0	7.4925537						39	3	2	NaN	NaN	NaN	0.8439	1	8863	8863		3.1533	0	1	3033.5			21973	5755	12704	13071	17430	17430					-0.016657516735790523
REVLDQLYVFG	11	Unmodified	_REVLDQLYVFG_					0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.85625212925	2	669.856252	1337.69795	1.0847	0.00072658	-0.89158	-0.00059723	0.19311	0.00012935	669.8559697438069	28.845	0.14483	28.837	28.789	28.933	-0.0083504	1098	55	0.960755	0.03296125	0.9592356	388.78256	0	13.338196						207	7	4	NaN	NaN	NaN	0.44296	1	18507	18507		20.513	10.767	1	26329	+		21974	8532	12705	13072	17431	17431					0.042610267690406545
REVLDQLYVFG	11	Unmodified						0	0	0			REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	REV__nc|ENSG00000064687|Q8IZY2-2|ABCA7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	669.856252	1337.69795	1.0847	0.00072658	-0.89158	-0.00059723	0.19311	0.00012935	669.8559697438069	28.845	0.14483	28.837	28.789	28.933	-0.0083504	1098	55	0.960755	0.03296125	0.9592356	388.78256		13.338196	0.0075112	0.00013882	-0.00075972	NaN	20.513	207	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26329	+		21975	8532	12705	13072							0.042610267690406545
REVSDRCVGV	10	Unmodified	_REVSDRCVGV_					0	0	0			REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2823970819001	2	560.282397	1118.55024	1.2419	0.00069579	-5.1877	-0.0029066	-3.9458	-0.0022108	560.2796693514217	15.1	0.19223	15.088	15.016	15.208	-0.011738	1260	70	0.8615505	0.04235655	0.8600311	349.3357	0	17.174438						232	9	2	NaN	NaN	NaN	0.58645	1	13211	13211		15.822	2.3589	1	25184	+		21976	9128	12706	13073	17432	17432					-0.004291880366054102
REVSDRCVGV	10	Unmodified						0	0	0			REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.282397	1118.55024	1.2419	0.00069579	-5.1877	-0.0029066	-3.9458	-0.0022108	560.2796693514217	15.1	0.19223	15.088	15.016	15.208	-0.011738	1260	70	0.8615505	0.04235655	0.8600311	349.3357		17.174438	0.029469	0.00079191	0.00016157	NaN	15.822	232	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25184	+		21977	9128	12706	13073							-0.004291880366054102
REWLIGNSVTW	11	Unmodified	_REWLIGNSVTW_					0	0	0		ENSG00000163106|ENST00000295256|HPGDS	ENSG00000163106|ENST00000295256|HPGDS	ENSG00000163106|ENST00000295256|HPGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8540437913	2	680.854044	1359.69353	1.517	0.0010329	-2.5975	-0.0017685	-1.0805	-0.00073567	680.8521347627205	27.639	0.096502	27.639	27.615	27.712	0	1080	34	0.9717421	0.020137608	0.9717421	393.16357	0	8.147614						86	5	3	NaN	NaN	NaN	0.69656	1	19677	19677		7.6826	1.7628	1	6386.2			21978	4202	12707	13074	17433	17433					0.02807562346129089
REWLIGNSVTW	11	Unmodified	_REWLIGNSVTW_					0	0	0		ENSG00000163106|ENST00000295256|HPGDS	ENSG00000163106|ENST00000295256|HPGDS	ENSG00000163106|ENST00000295256|HPGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8540437913	2	680.854044	1359.69353	1.3835	0.00094193	-3.2986	-0.0022459	-1.9152	-0.0013039	680.8514743661414	27.663	0.072374	27.653	27.629	27.702	-0.009552	1080	37	0.9717421	0.021969438	0.97022265	393.16357	0	8.888763						65	4	2	NaN	NaN	NaN	0.65815	1	18776	18776		10.204	2.5212	1	5681.1			21979	4202	12707	13074	17434	17434					0.02807562346129089
RFCDNVWTF	9	Unmodified	_RFCDNVWTF_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2687583904	2	594.268758	1186.52296	1.378	0.0008189	2.1312	0.0012665	3.5092	0.0020854	594.7739945946095	27.567	0.33788	27.567	27.398	27.736	0	1215	94	0.8891654	0.056972206	0.8891654	360.28122	0	23.084564						549	15	3	NaN	NaN	NaN	0.16939	1	16048	16048		27.296	10.712	1	111320			21980	3262	12708	13075	17435	17435					-0.06283671577011773
RFDEAYIYM	9	Oxidation (M)	_RFDEAYIYM(Oxidation (M))_		RFDEAYIYM(1)		RFDEAYIYM(67)	0	0	1		ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.27370638255	2	612.273706	1222.53286	1.0605	0.00064929	-2.1742	-0.0013312	-1.1138	-0.00068192	612.2726738473405	20.983	0.24067	20.983	20.887	21.127	0	1167	70	0.91857195	0.0422377	0.91857195	372.07043	0	17.108551						457	11	5	NaN	NaN	NaN	0.024221	1	17033	17033		66.656	52.231	1	113320			21981	405	12709	13076	17436	17436		35			-0.06950528362267505
RFDEAYIYM	9	Unmodified	_RFDEAYIYM_					0	0	0		ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.2762490715	2	604.276249	1206.53795	1.0205	0.00061666	-5.16	-0.0031181	-4.1395	-0.0025014	604.7735716450431	24.743	0.28946	24.731	24.562	24.851	-0.012394	1167	79	0.91857195	0.047770202	0.9170525	372.12552	0	19.352356						446	13	3	NaN	NaN	NaN	0.19268	1	15976	15976		25.801	5.2876	1	104350			21982	405	12709	13077	17437	17437					-0.05706224499658674
RFDESMQVF	9	Unmodified	_RFDESMQVF_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.76604852595	2	579.766049	1157.51754	2.0294	0.0011766	2.0524	0.0011899	4.0818	0.0023665	579.767793840309	23.586	0.12043	23.586	23.538	23.658	0	1230	88	0.8799654	0.05334258	0.8799654	356.65613	0	21.620117						253	6	3	NaN	NaN	NaN	0.40649	1	15061	15061		13.463	3.1029	1	46397			21983	4511	12710	13078	17438	17438					-0.054913951594471655
RFDESMQVF	9	Unmodified	_RFDESMQVF_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.76604852595	2	579.766049	1157.51754	1.8622	0.0010796	-0.013217	-7.6625E-06	1.849	0.001072	580.2687627764303	23.609	0.14464	23.596	23.524	23.669	-0.013048	1227	64	0.88180584	0.038639963	0.8802864	357.40207	0	15.661041						317	7	5	NaN	NaN	NaN	0.34922	1	14561	14561		15.822	2.3589	1	47660			21984	4511	12710	13078	17439	17439					-0.054913951594471655
RFDEWDEL	8	Unmodified	_RFDEWDEL_					0	0	0		ENST00000490758.6_1_1:109656894-109730836:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	ENST00000490758.6_1_1:109656894-109730836:+|nuORF	ENST00000490758.6_1_1:109656894-109730836:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.24854587705	2	555.248546	1108.48254	1.479	0.00082121	-9.9152	-0.0055054	-8.4362	-0.0046842	555.7447322413548	34.107	0.31364	34.107	34.035	34.348	0	1239	115	0.87444305	0.06995392	0.87444305	354.60248	0	28.367584						1273	14	7	NaN	NaN	NaN	0.65075	1	13206	13206		22.126	0.29135	1	994400			21985	2077	12711	13079	17440	17440					-0.06736314695763213
RFDHVITNM	9	Unmodified	_RFDHVITNM_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7820329411501	2	566.782033	1131.54951	1.7983	0.0010193	-10.018	-0.0056779	-8.2194	-0.0046586	567.2784247459233	27.808	0.14478	27.808	27.664	27.808	0	1221	70	0.885486	0.042324543	0.885486	358.9907	0	17.159027						291	7	4	NaN	NaN	NaN	0.40649	1	14140	14140		13.463	2.2927	1	32023			21986	4888	12712	13080	17441	17441					-0.010999826856505024
RFDHVITNM	9	Unmodified						0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.782033	1131.54951	0.93471	0.00052978	-10.093	-0.0057207	-9.1586	-0.0051909	567.2776872418315	27.759	0.096521	27.75	27.702	27.798	-0.009552	1218	55	0.8873258	0.033114612	0.8858064	359.73657		13.425171	-0.029316	-4.9806E-05	0.00016018	NaN	13.463	109	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23623			21987	4888	12712	13080							-0.010999826856505024
RFDHVITNM	9	Oxidation (M)	_RFDHVITNM(Oxidation (M))_		RFDHVITNM(1)		RFDHVITNM(59)	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7794902522	2	574.77949	1147.54443	1.2262	0.00070477	-3.6432	-0.002094	-2.4171	-0.0013893	574.7782740849027	15.268	0.19199	15.256	15.16	15.352	-0.012202	1230	49	0.8799654	0.029447913	0.878446	356.69266	0	11.936676						236	9	4	NaN	NaN	NaN	0.030261	1	14227	14227		58.769	31.473	1	30658			21988	4888	12712	13081	17442	17442		513			-0.023442865482820707
RFDPLGHYL	9	Unmodified	_RFDPLGHYL_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2930907664501	2	559.293091	1116.57163	1.629	0.00091111	-0.86423	-0.00048336	0.76482	0.00042776	559.2930025809007	23.175	0.16877	23.162	23.065	23.234	-0.013294	1197	49	0.9001988	0.029419243	0.8986794	365.01437	0	11.928955						188	8	3	NaN	NaN	NaN	0.14787	1	13144	13144		28.896	8.3823	1	20312			21989	1765	12713	13082	17443	17443					0.018005650544182572
RFDPLGHYL	9	Unmodified						0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.293091	1116.57163	1.951	0.0010912	-5.3145	-0.0029724	-3.3635	-0.0018812	559.2903929086474	22.983	0.14437	22.983	22.935	23.079	0	1200	97	0.89836043	0.058876753	0.89836043	364.26895		23.873444	-0.089364	-0.0030163	-0.00015948	NaN	28.896	324	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37003			21990	1765	12713	13082							0.018005650544182572
RFDSDVGEF	9	Unmodified	_RFDSDVGEF_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.24072084495	2	536.240721	1070.46689	0.86349	0.00046304	0.72047	0.00038635	1.584	0.00084939	536.2411183841206	20.67	0.16881	20.656	20.608	20.776	-0.014086	1296	67	0.8394264	0.04056537	0.83790696	340.55096	0	16.457153						185	8	3	NaN	NaN	NaN	0.064504	1	11274	11274		40.957	28.908	1	52105			21991	5601;6018	12714	13083	17444	17444					-0.06552601212820264
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.18921239316666	3	395.189212	1182.54581	1.0444	0.00041272	-1.206	-0.00047661	-0.16169	-6.3896E-05	395.1886709795606	20.983	0.12031	20.983	20.959	21.079	0	1476	40	0.72837335	0.024141133	0.72837335	442.70755	0	14.673065						107	6	3	NaN	NaN	NaN	0.10363	1	15910	15910		43.776	34.857	1	9781.3			21992	2728	12715	13084	17445	17445					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.28018035645	2	592.28018	1182.54581	1.7026	0.0010084	-1.0133	-0.00060015	0.68932	0.00040827	592.2797805534324	20.983	0.31296	20.983	20.935	21.248	0	1200	76	0.89836043	0.045970082	0.89836043	364.02103	0	18.62738						761	14	6	NaN	NaN	NaN	7.355E-12	1	15913	15913		146.99	94.207	1	507670			21993	2728	12715	13084	17446	17446					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	ENST00000369299.7_1_1:145575401-145580415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.28018035645	2	592.28018	1182.54581	1.383	0.00081915	-0.84993	-0.0005034	0.53311	0.00031575	592.2797664010897	21.103	0.36108	21.089	20.969	21.33	-0.014004	1200	91	0.89836043	0.0551731	0.896841	364.02103	0	22.356476						735	16	4	NaN	NaN	NaN	0.017791	1	15310	15310		74.794	24.833	1	489690			21994	2728	12715	13084	17447	17447					-0.03816329187861811
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.53661211506665	3	409.536612	1225.58801	1.2607	0.0005163	-0.74405	-0.00030471	0.51666	0.00021159	409.5362547027051	14.645	0.26406	14.645	14.549	14.813	0	1485	55	0.72280174	0.033428073	0.72280174	439.1434	0	20.309448						315	12	4	NaN	NaN	NaN	0.14787	1	17118	17118		25.681	19.748	1	78380			21995	1316	12716	13085	17448	17448					-0.015763537795010052
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.53661211506665	3	409.536612	1225.58801	1.3202	0.00054066	-1.638	-0.00067081	-0.31781	-0.00013016	409.5355285693019	14.98	0.072063	14.968	14.896	14.968	-0.011738	1488	34	0.7209441	0.020436049	0.71942466	438.0148	0	12.416046						69	4	3	NaN	NaN	NaN	0.44082	1	16436	16436		14.854	9.8371	1	5027			21996	1316	12716	13085	17449	17449					-0.015763537795010052
RFEINDKLEE	10	Unmodified	_RFEINDKLEE_					0	0	0			REV__SYDE2|p.Y292Lfs*9|1|0.32|ENSG00000097096|chr1:85190623-85190624|-/A|frameshift_variant	REV__SYDE2|p.Y292Lfs*9|1|0.32|ENSG00000097096|chr1:85190623-85190624|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.55421992556677	3	431.55422	1291.64083	1.0829	0.00046731	-8.2832	-0.0035746	-7.2003	-0.0031073	431.5513175185509	14.789	0.048044	14.789	14.765	14.813	0	1413	61	0.7673241	0.03703767	0.7673241	465.92816	0	22.489685						84	3	2	NaN	NaN	NaN	0.74182	1	18617	18617		2.4611	1.2322	1	7210.3	+		21997	8765	12717	13086	17450	17450					0.00667559492694636
RFFIPECL	8	Unmodified	_RFFIPECL_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5284494002	1	1024.52845	1023.52117	1.3128	0.001345	8.4793	0.0086873	9.7921	0.010032	1024.537850533344	28.097	0.21721	28.088	28.064	28.281	-0.0089798	147	82	1.5316714	0.047807455	1.530152	310.88058	0	9.7034						221	10	2	NaN	NaN	NaN	0.80692	1	9324	9324		8.2903	1.4271	1	50489			21998	5506	12718	13087	17451	17451					0.010353194050708225
RFFPYTSSQMF	11	Unmodified	_RFFPYTSSQMF_					0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.829180099	2	705.82918	1409.64381	1.3454	0.00094965	-2.9745	-0.0020995	-1.629	-0.0011498	705.8271342605249	26.601	0.26549	26.601	26.481	26.746	0	1074	88	0.9754029	0.053084254	0.9754029	394.50397	0	21.470032						409	12	4	NaN	NaN	NaN	0.066897	1	20144	20144		45.55	32.087	1	61173			21999	501	12719	13088	17452	17452					-0.04462888654188646
RFFPYTSSQMF	11	Unmodified						0	0	0		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	705.82918	1409.64381	0.84913	0.00059934	-2.3749	-0.0016763	-1.5258	-0.001077	706.3290443428951	26.673	0.28958	26.663	26.518	26.808	-0.010643	1071	76	0.977233	0.04574746	0.97571355	395.24414		18.502686	0.030712	0.00051755	0.00015533	NaN	45.55	372	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42792			22000	501	12719	13088							-0.04462888654188646
RFFPYTSSQMF	11	Oxidation (M)	_RFFPYTSSQM(Oxidation (M))F_		RFFPYTSSQM(1)F		RFFPYTSSQM(73)F	0	0	1		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.82663741005	2	713.826637	1425.63872	1.5488	0.0011056	-2.0287	-0.0014481	-0.47985	-0.00034253	713.8252003343268	23.778	0.28913	23.778	23.658	23.947	0	1068	67	0.97906286	0.040259898	0.97906286	395.94107	0	16.281433						666	13	4	NaN	NaN	NaN	0.0064469	1	20254	20254		72.747	61.577	1	104680			22001	501	12719	13089	17453	17453		45			-0.05707192516797477
RFFPYTSSQMF	11	Oxidation (M)	_RFFPYTSSQM(Oxidation (M))F_		RFFPYTSSQM(1)F		RFFPYTSSQM(57)F	0	0	1		nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-2|PIAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.82663741005	2	713.826637	1425.63872	1.5711	0.0011215	-1.5993	-0.0011416	-0.028221	-2.0145E-05	713.825327027552	23.826	0.33751	23.813	23.693	24.03	-0.013048	1065	73	0.9808926	0.04391998	0.97937316	396.68103	0	17.761597						670	15	4	NaN	NaN	NaN	0.029054	1	19295	19295		57.081	43.618	1	99750			22002	501	12719	13089	17454	17454		45			-0.05707192516797477
RFGAGAGG	8	Unmodified	_RFGAGAGG_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3474485672002	1	692.347449	691.340172	2.1482	0.0014873	-0.70471	-0.00048791	1.4435	0.00099943	692.3472761647392	17.981	0.047945	17.981	17.981	18.029	0	708	43	1.1972283	0.02529192	1.1972283	244.5459	0	5.1661224						53	3	2	NaN	NaN	NaN	0.84945	1	3054	3054		0	0	1	4424.6		+	22003	219	12720	13090	17455	17455					-0.01784437856611021
RFIDAVYKL	9	Unmodified	_RFIDAVYKL_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8267664083	2	562.826766	1123.63898	2.0459	0.0011515	-1.7578	-0.00098934	0.28811	0.00016216	562.8258254799282	22.887	0.096464	22.887	22.863	22.959	0	1203	40	0.8965218	0.023904443	0.8965218	363.49554	0	9.692078						111	5	3	NaN	NaN	NaN	0.54912	1	13844	13844		7.5876	1.8934	1	15075			22004	4296	12721	13091	17456	17456					0.08210595265359188
RFIDAVYKL	9	Unmodified	_RFIDAVYKL_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8267664083	2	562.826766	1123.63898	1.576	0.00088703	-3.5352	-0.0019897	-1.9592	-0.0011027	562.8250596363793	23.079	0.12039	23.065	22.969	23.09	-0.013294	1203	37	0.8965218	0.022062063	0.89500237	363.49554	0	8.945068						97	6	2	NaN	NaN	NaN	0.40649	1	13412	13412		13.463	3.8514	1	15825			22005	4296	12721	13091	17457	17457					0.08210595265359188
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.76670884044995	2	498.766709	995.518865	0.8516	0.00042475	0.40157	0.00020029	1.2532	0.00062504	498.76714537205186	20.646	0.096508	20.632	20.608	20.704	-0.014086	1311	61	0.83019954	0.036913514	0.8286801	337.12958	0	14.989929						148	5	3	NaN	NaN	NaN	0.25548	1	8242	8242		21.771	11.166	1	19936			22006	4862	12722	13092	17458	17458					0.02092606991595858
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.82930909725	2	560.829309	1119.64407	1.3387	0.0007508	-0.39018	-0.00021883	0.94854	0.00053197	560.8290277044277	31.259	0.28961	31.259	31.163	31.452	0	1236	91	0.876284	0.05519098	0.876284	355.30548	0	22.378174						839	13	5	NaN	NaN	NaN	0.00020136	1	13678	13678		116.74	55.465	1	519800			22007	2492	12723	13093	17459	17459					0.08902899127974706
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;PSMB2|p.S179T|1|0.17|ENSG00000126067|chr1:35603337-35603337|C/G|missense_variant	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.82930909725	2	560.829309	1119.64407	1.5257	0.00085565	-0.53988	-0.00030278	0.9858	0.00055287	560.8291239866749	31.331	0.38611	31.326	31.181	31.567	-0.0050716	1236	97	0.876284	0.05885768	0.8747646	355.30548	0	23.86493						1072	17	5	NaN	NaN	NaN	0.019103	1	13275	13275		73.133	28.831	1	558940			22008	2492	12723	13093	17460	17460					0.08902899127974706
RFIPRENGVYL	11	Unmodified	_RFIPRENGVYL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.25421619760004	3	455.254216	1362.74082	1.1186	0.00050925	-0.4041	-0.00018397	0.7145	0.00032528	455.58863087828354	20.069	0.16819	20.069	19.997	20.165	0	1461	37	0.7376554	0.022268474	0.7376554	447.66592	0	13.514191						170	8	3	NaN	NaN	NaN	0.4078	1	19724	19724		12.15	1.3271	1	18376			22009	5664	12724	13094	17461	17461					0.07395841617130827
RFIPRENGVYL	11	Unmodified	_RFIPRENGVYL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	455.25421619760004	3	455.254216	1362.74082	1.2397	0.00056436	0.39363	0.0001792	1.6333	0.00074356	455.2550683919327	20.405	0.12045	20.391	20.295	20.415	-0.014141	1458	37	0.7395112	0.022270858	0.73799175	448.79218	0	13.5156555						84	6	2	NaN	NaN	NaN	0.67772	1	18808	18808		6.3563	2.7618	1	9412.1			22010	5664	12724	13094	17462	17462					0.07395841617130827
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2980387586	2	601.298039	1200.58152	1.0315	0.00062026	-1.9276	-0.0011591	-0.89609	-0.00053881	601.2969637528821	24.333	0.072393	24.333	24.309	24.381	0	1188	79	0.90571284	0.04775989	0.90571284	366.9367	0	19.349243						189	4	3	NaN	NaN	NaN	0.11656	1	16491	16491		33.425	21.377	1	37998			22011	1638	12725	13095	17463	17463					-0.010742917308789401
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2980387586	2	601.298039	1200.58152	0.96313	0.00057913	-1.9296	-0.0011602	-0.96644	-0.00058112	601.2961132715124	24.357	0.096539	24.344	24.296	24.393	-0.012747	1191	79	0.90387505	0.047765017	0.9023556	366.19214	0	19.351318						216	5	3	NaN	NaN	NaN	0.11656	1	15843	15843		33.425	14.262	1	40080			22012	1638	12725	13095	17464	17464					-0.010742917308789401
RFIRPMGLRF	10	Unmodified	_RFIRPMGLRF_					0	0	0		ENST00000560515.1_1_15:59693458-59694001:-|nuORF;ENSG00000164346|ENST00000610426|NSA2	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.5851317151333	3	431.585132	1291.73357	1.1135	0.00048055	0.10874	4.6931E-05	1.2222	0.00052749	431.5850111581879	21.079	0.12031	21.079	20.959	21.079	0	1356	28	0.8024889	0.016640782	0.8024889	487.2802	0	10.104462						58	6	2	NaN	NaN	NaN	0.47025	1	18622	18622		20.688	15.671	1	5346.5			22013	4317	12726	13096	17465	17465					0.09936830535684749
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.80382262825	2	569.803823	1137.59309	2.111	0.0012028	-1.8887	-0.0010762	0.22229	0.00012666	569.8026588691304	17.525	0.2157	17.525	17.477	17.693	0	1215	58	0.8891654	0.034944832	0.8891654	360.4593	0	14.166321						264	10	4	NaN	NaN	NaN	0.060816	1	14372	14372		42.318	16.517	1	43245			22014	3603	12727	13097	17466	17466					0.029799500831359182
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.2049739077	3	380.204974	1137.59309	1.8967	0.00072113	-0.76822	-0.00029208	1.1285	0.00042905	380.20457943124416	17.525	0.095837	17.525	17.501	17.597	0	1494	34	0.7172283	0.02044046	0.7172283	436.13177	0	12.429413						66	5	2	NaN	NaN	NaN	0.2345	1	14373	14373		20.688	6.2381	1	4490.9			22015	3603	12727	13097	17467	17467					0.029799500831359182
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.80382262825	2	569.803823	1137.59309	1.6796	0.00095707	-1.0565	-0.00060202	0.62312	0.00035505	569.8034187400941	17.834	0.3118	17.82	17.676	17.988	-0.013786	1215	40	0.8891654	0.023914814	0.88764596	360.4593	0	9.694824						283	14	2	NaN	NaN	NaN	0.13999	1	13905	13905		30.035	0.43708	1	51605			22016	3603	12727	13097	17468	17468					0.029799500831359182
RFKEANNFLW	10	Unmodified	_RFKEANNFLW_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.843479105	2	662.843479	1323.67241	1.6567	0.0010981	-2.98	-0.0019753	-1.3234	-0.00087718	662.8414109647131	22.429	0.19271	22.429	22.356	22.549	0	1095	43	0.9625867	0.025642037	0.9625867	389.56598	0	10.377533						180	9	4	NaN	NaN	NaN	0.2504	1	19151	19151		31.198	9.3476	1	22629			22017	3603	12728	13098	17469	17469					0.02351597037272768
RFKEANNFLW	10	Unmodified	_RFKEANNFLW_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.2314115588666	3	442.231412	1323.67241	1.1892	0.0005259	-1.3524	-0.00059806	-0.16317	-7.2158E-05	442.5655124790289	22.405	0.12037	22.405	22.38	22.501	0	1509	67	0.70793515	0.040874183	0.70793515	429.75653	0	24.812958						104	6	2	NaN	NaN	NaN	0.22448	1	19154	19154		22.026	7.0664	1	8394.6			22018	3603	12728	13098	17470	17470					0.02351597037272768
RFKNKAYLL	9	Unmodified	_RFKNKAYLL_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.9011142666334	3	384.901114	1151.68151	1.5268	0.00058767	-2.2939	-0.00088293	-0.76709	-0.00029525	384.90006708414376	15.942	0.19185	15.942	15.894	16.086	0	1491	34	0.7190863	0.020438194	0.7190863	437.19766	0	12.42627						124	9	2	NaN	NaN	NaN	0.27507	1	14872	14872		20.513	8.3638	1	17282			22019	1269	12729	13099	17471	17471					0.11173990393604072
RFKNKAYLL	9	Unmodified	_RFKNKAYLL_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.9011142666334	3	384.901114	1151.68151	2.4871	0.00095728	-3.3682	-0.0012964	-0.88114	-0.00033915	385.23352190992824	17.426	0.096037	17.412	17.412	17.508	-0.013567	1491	28	0.7190863	0.016722202	0.71756685	437.19766	0	10.166931						54	5	2	NaN	NaN	NaN	0.49999	1	14366	14366		9.6116	1.3341	1	3238.4			22020	1269	12729	13099	17472	17472					0.11173990393604072
RFLAATFLL	9	Unmodified	_RFLAATFLL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.3185772354501	2	526.318577	1050.6226	1.221	0.00064264	-2.4956	-0.0013135	-1.2746	-0.00067086	526.3171436773943	30.632	0.16896	30.632	30.584	30.753	0	1227	52	0.88180584	0.031286716	0.88180584	357.8299	0	12.695892						293	8	4	NaN	NaN	NaN	0.10363	1	10666	10666		35.296	4.6864	1	72750			22021	2222	12730	13100	17473	17473					0.09931514099275773
RFLAATFLL	9	Unmodified	_RFLAATFLL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.3185772354501	2	526.318577	1050.6226	1.0028	0.0005278	-1.6468	-0.00086676	-0.64401	-0.00033896	526.3177612974645	30.776	0.31371	30.77	30.649	30.963	-0.0057545	1224	58	0.883646	0.034959912	0.88212657	358.57663	0	14.186462						394	14	4	NaN	NaN	NaN	0.18779	1	10445	10445		26.115	1.1539	1	71154			22022	2222	12730	13100	17474	17474					0.09931514099275773
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.56427923103325	3	408.564279	1222.67101	1.4994	0.00061262	-2.9085	-0.0011883	-1.409	-0.00057568	408.56279036417544	27.905	0.16889	27.905	27.881	28.05	0	1461	88	0.7376554	0.053853333	0.7376554	448.17978	0	32.71985						254	8	4	NaN	NaN	NaN	6.8022E-06	1	17049	17049		93.934	70.581	1	48853			22023	541	12731	13101	17475	17475					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.3427806132499	2	612.342781	1222.67101	1.6695	0.0010223	-1.4421	-0.00088309	0.22737	0.00013923	612.3414138361446	27.905	0.3137	27.905	27.857	28.17	0	1122	70	0.9460945	0.04217851	0.9460945	383.21805	0	17.084503						521	14	4	NaN	NaN	NaN	2.8337E-06	1	17050	17050		125.8	87.671	1	520220			22024	541	12731	13101	17476	17476					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.56427923103325	3	408.564279	1222.67101	0.96815	0.00039555	-1.7056	-0.00069685	-0.73745	-0.0003013	408.5633364998393	28.097	0.31374	28.088	27.992	28.305	-0.0089798	1461	64	0.7376554	0.038976073	0.73613596	448.17975	0	23.680847						350	14	3	NaN	NaN	NaN	0.0094358	1	16354	16354		53.852	44.266	1	57776			22025	541	12731	13101	17477	17477					0.06857962948492968
RFLDDLGLKF	10	Unmodified	_RFLDDLGLKF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.3427806132499	2	612.342781	1222.67101	1.2421	0.0007606	-1.6182	-0.00099088	-0.37606	-0.00023028	612.3418653744101	28.073	0.45851	28.064	27.919	28.378	-0.0089779	1131	82	0.94059354	0.049535275	0.93907416	380.9899	0	20.064392						788	20	3	NaN	NaN	NaN	0.0029015	1	16355	16355		82.967	55.671	1	550850			22026	541	12731	13101	17478	17478					0.06857962948492968
RFLDLPWEDVL	11	Unmodified	_RFLDLPWEDVL_					0	0	0		ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.87190219345	2	701.871902	1401.72925	0.60259	0.00042294	-6.7237	-0.0047192	-6.1211	-0.0042962	701.8670542688185	37.241	0.12041	37.241	37.193	37.314	0	1044	58	0.99369496	0.034738123	0.99369496	401.9243	0	14.05069						162	6	2	NaN	NaN	NaN	0.58731	1	20079	20079		14.854	4.6103	1	16825			22027	1653	12732	13102	17479	17479					0.044455998031025956
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.3645786878501	2	684.364579	1366.7146	2.743	0.0018772	-3.383	-0.0023152	-0.64	-0.00043799	684.3622576942365	26.046	0.2896	26.046	25.998	26.288	0	1080	85	0.9717421	0.05124539	0.9717421	393.14325	0	20.732666						787	13	5	NaN	NaN	NaN	0.055118	1	19767	19767		69.32	44.919	1	422240			22028	6071	12733	13103	17480	17480					0.04591572445656311
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.5788112807667	3	456.578811	1366.7146	1.7801	0.00081275	-2.0608	-0.00094091	-0.28069	-0.00012816	456.57807665063484	26.046	0.26546	26.046	25.998	26.263	0	1470	133	0.7320868	0.08157134	0.7320868	444.27353	0	49.50232						765	12	4	NaN	NaN	NaN	0.059168	1	19768	19768		47.511	35.204	1	160310			22029	6071	12733	13103	17481	17481					0.04591572445656311
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.5788112807667	3	456.578811	1366.7146	0.88108	0.00040228	0.049034	2.2388E-05	0.93012	0.00042467	456.5794361070304	26.795	0.14529	26.795	26.722	26.867	0	1473	43	0.7302302	0.025991142	0.7302302	443.14682	0	15.772919						93	7	2	NaN	NaN	NaN	0.55071	1	19769	19769		16.659	10.303	1	6455			22030	6071	12733	13103	17482	17482					0.04591572445656311
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	456.5788112807667	3	456.578811	1366.7146	1.6559	0.00075606	-2.7267	-0.001245	-1.0708	-0.0004889	456.5773465882744	26.384	0.57906	26.373	26.156	26.735	-0.011137	1470	127	0.7320868	0.07788038	0.73056734	444.27353	0	47.26242						1163	25	3	NaN	NaN	NaN	0.0039884	1	18841	18841		75.138	63.671	1	232640			22031	6071	12733	13103	17483	17483					0.04591572445656311
RFLNDPGHLLW	11	Unmodified	_RFLNDPGHLLW_					0	0	0		ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000498414.5_1_6:30314081-30314584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3645786878501	2	684.364579	1366.7146	2.231	0.0015268	-2.3456	-0.0016052	-0.11454	-7.8389E-05	684.363044253696	26.384	0.72388	26.373	26.18	26.904	-0.011137	1080	112	0.9717421	0.06767708	0.97022265	393.14325	0	27.380524						1387	31	2	NaN	NaN	NaN	0.20822	1	18842	18842		44.633	22.862	1	484590			22032	6071	12733	13103	17484	17484					0.04591572445656311
RFLNHSALREE	11	Unmodified	_RFLNHSALREE_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.90910857299997	3	457.909109	1370.7055	1.1996	0.0005493	-0.26025	-0.00011917	0.93934	0.00043013	457.9092727339968	25.057	0.19302	25.057	24.985	25.178	0	1368	43	0.7950918	0.025895417	0.7950918	482.49463	0	15.714447						259	9	4	NaN	NaN	NaN	0.62211	1	19807	19807		6.3563	1.4556	1	60260	+		22033	9259	12734	13104	17485	17485					0.03497179089322344
RFLNHSALREE	11	Unmodified						0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	457.909109	1370.7055	1.1996	0.0005493	-0.26025	-0.00011917	0.93934	0.00043013	457.9092727339968	25.057	0.19302	25.057	24.985	25.178	0	1368	43	0.7950918	0.025895417	0.7950918	482.49463		15.714447	-0.090398	-0.00034433	0.0016846	NaN	6.3563	259	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60260	+		22034	9259	12734	13104							0.03497179089322344
RFLNHSALREE	11	Unmodified						0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	457.909109	1370.7055	1.3554	0.00062066	0.22427	0.0001027	1.5797	0.00072336	458.2433983644683	25.25	0.26538	25.238	25.093	25.358	-0.012011	1371	37	0.79324204	0.022198498	0.7917226	481.3721		13.470978	0.090398	0.00032128	-0.0016846	NaN	6.3563	192	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40765	+		22035	9259	12734	13104							0.03497179089322344
RFLPARGS	8	Unmodified	_RFLPARGS_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.5159108790001	1	903.515911	902.508634	0.99958	0.00090314	5.7355	0.0051821	6.735	0.0060852	903.5232314807463	31.404	0.048252	31.404	31.38	31.428	0	336	49	1.419741	0.028524995	1.419741	288.67545	0	5.7999573						68	3	2	NaN	NaN	NaN	0.82627	1	6131	6131		5.6942	0	1	5838.7			22036	5077	12735	13105	17486	17486					0.05348044057041079
RFLQGCVFTFM	11	Unmodified	_RFLQGCVFTFM_					0	0	0			REV__ENSG00000118496|ENST00000237281|FBXO30	REV__ENSG00000118496|ENST00000237281|FBXO30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.2228711841666	3	450.222871	1347.64678	1.0729	0.00048305	6.3098	0.0028408	7.3827	0.0033238	450.22535224423393	24.019	0.072334	24.019	23.995	24.068	0	1413	28	0.7673241	0.016675055	0.7673241	465.72345	0	10.12085						55	4	2	NaN	NaN	NaN	0.76488	1	19513	19513		0.9877	0.27159	1	3794.2	+		22037	9267	12736	13106	17487	17487					-0.013133368010358026
RFLSGIINF	9	Unmodified	_RFLSGIINF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.8058340009501	2	533.805834	1065.59712	1.7654	0.00094237	-2.0906	-0.001116	-0.3252	-0.00017359	533.8045283257926	29.136	0.16892	29.136	29.112	29.28	0	1248	55	0.8689189	0.033143222	0.8689189	352.53638	0	13.446808						235	8	4	NaN	NaN	NaN	0.030696	1	11377	11377		58.2	25.747	1	47663			22038	3407	12737	13107	17488	17488					0.06694039576859723
RFLSGIINF	9	Unmodified	_RFLSGIINF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8058340009501	2	533.805834	1065.59712	0.74335	0.00039681	-0.43041	-0.00022976	0.31294	0.00016705	533.8055210100512	29.231	0.24135	29.224	29.151	29.393	-0.0077209	1248	46	0.8689189	0.027620852	0.86739945	352.53638	0	11.206268						304	11	3	NaN	NaN	NaN	0.34922	1	11114	11114		15.822	3.234	1	48361			22039	3407	12737	13107	17489	17489					0.06694039576859723
RFLTPSELLF	10	Unmodified	_RFLTPSELLF_					0	0	0		nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8451561267001	2	611.845156	1221.67576	0.58026	0.00035503	-3.2435	-0.0019845	-2.6632	-0.0016295	611.8439451987036	30.704	0.12066	30.704	30.656	30.777	0	1128	40	0.9424274	0.02384001	0.9424274	381.73618	0	9.656555						98	6	3	NaN	NaN	NaN	0.68732	1	17025	17025		8.9191	1.3315	1	10910			22040	3292	12738	13108	17490	17490					0.07378847091285934
RFMDGHITF	9	Unmodified	_RFMDGHITF_					0	0	0		ENSG00000078081|ENST00000265598|LAMP3	ENSG00000078081|ENST00000265598|LAMP3	ENSG00000078081|ENST00000265598|LAMP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.27130107935	2	562.271301	1122.52805	1.7797	0.0010007	-0.54617	-0.00030709	1.2335	0.00069356	562.2702279379668	21.537	0.16875	21.537	21.488	21.657	0	1218	73	0.8873258	0.044162333	0.8873258	359.77133	0	17.905853						222	8	2	NaN	NaN	NaN	0.14787	1	13786	13786		28.896	8.4469	1	38415			22041	876	12739	13109	17491	17491					-0.028313677143842142
RFNNQLYDM	9	Unmodified	_RFNNQLYDM_					0	0	0			REV__nc|ENSG00000106278|P23471-3|PTPRZ1	REV__nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.77694756325	2	600.776948	1199.53934	0.88676	0.00053275	-1.6054	-0.00096452	-0.71868	-0.00043177	600.7766340271219	27.156	0.072397	27.146	27.098	27.17	-0.010126	1200	76	0.89836043	0.045930386	0.896841	363.96155	0	18.608215						80	4	2	NaN	NaN	NaN	0.63698	1	15807	15807		3.9685	0	1	8319.6	+		22042	8984	12740	13110	17492	17492					-0.05244590410893579
RFQEKFFIF	9	Unmodified	_RFQEKFFIF_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.22911946156665	3	421.229119	1260.66553	1.3002	0.0005477	-1.1193	-0.00047149	0.18091	7.6206E-05	421.22875999725767	26.819	0.096537	26.819	26.795	26.891	0	1410	43	0.76917666	0.025940418	0.76917666	467.17426	0	15.755402						61	5	2	NaN	NaN	NaN	0.54912	1	18016	18016		7.1304	2.1135	1	5330.7			22043	875	12741	13111	17493	17493					0.04562284156691021
RFQMTFQCP	9	Unmodified	_RFQMTFQCP_					0	0	0		ENST00000334512.9_1_10:81072839-81072890:+|nuORF	ENST00000334512.9_1_10:81072839-81072890:+|nuORF	ENST00000334512.9_1_10:81072839-81072890:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.5125331265	3	386.512533	1156.51577	1.7872	0.00069079	-6.0388	-0.0023341	-4.2516	-0.0016433	386.51041999564586	28.845	0.072382	28.837	28.813	28.885	-0.0083504	1512	34	0.7060759	0.02044928	0.70455647	429.2663	0	12.432373						49	4	2	NaN	NaN	NaN	0.6532	1	14526	14526		1.6985	0.32885	1	3590.7			22044	6519	12742	13112	17494	17494					-0.05622727449053855
RFQPVREG	8	Unmodified	_RFQPVREG_					0	0	0			REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5322892247002	1	988.532289	987.525013	1.5284	0.0015109	5.7654	0.0056993	7.2938	0.0072102	988.5382333352126	30.801	0.048279	30.801	30.777	30.825	0	231	61	1.4820169	0.03551638	1.4820169	300.94806	0	7.2121887						80	3	2	NaN	NaN	NaN	0.84562	1	8135	8135		2.1763	0	1	5467.5	+		22045	9332	12743	13113	17495	17495					0.030751252231425497
RFQPVREG	8	Unmodified						0	0	0			REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.532289	987.525013	1.5284	0.0015109	5.7654	0.0056993	7.2938	0.0072102	988.5382333352126	30.801	0.048279	30.801	30.777	30.825	0	231	61	1.4820169	0.03551638	1.4820169	300.94806		7.2121887	0.0034256	0.00043264	-0.0010161	NaN	2.1763	80	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5467.5	+		22046	9332	12743	13113							0.030751252231425497
RFQPVREG	8	Unmodified						0	0	0			REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	REV__ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	988.532289	987.525013	1.8751	0.0018536	4.9368	0.0048802	6.8119	0.0067338	988.5357504248292	30.8	0.072344	30.794	30.746	30.818	-0.0057545	225	52	1.4855686	0.03018403	1.4840492	301.66928		6.1293945	-0.0034256	-0.00038648	0.0010161	NaN	2.1763	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4397.8	+		22047	9332	12743	13113							0.030751252231425497
RFQRYHKERQT	11	Unmodified	_RFQRYHKERQT_					0	0	0			REV__ENSG00000177692|ENST00000381947|DNAJC28	REV__ENSG00000177692|ENST00000381947|DNAJC28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.9107473157501	2	774.910747	1547.80694	1.3244	0.0010263	-4.6983	-0.0036408	-3.3739	-0.0026145	775.9109986981347	35.505	0.072392	35.505	35.505	35.577	0.00052643	1062	46	0.9827221	0.027448475	0.98120266	397.11935	0	11.091949						92	4	4	NaN	NaN	NaN	0.77843	1	19669	19669		0.51604	0	1	4535.9	+		22048	10771	12744	13114	17496	17496					0.05495050511876798
RFRMGHGL	8	Unmodified	_RFRMGHGL_					0	0	0			REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5148650215002	1	973.514865	972.507589	1.863	0.0018137	0.90341	0.00087948	2.7664	0.0026932	973.5141743356718	28.774	0.048231	28.774	28.75	28.798	0	273	46	1.4571344	0.026681185	1.4571344	295.95813	0	5.4191895						56	3	2	NaN	NaN	NaN	0.8439	1	7678	7678		3.1533	0	1	3713	+		22049	12395	12745	13115	17497	17497					0.020235064164921823
RFRMGHGL	8	Unmodified						0	0	0			REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	REV__ENST00000483082.1_1_1:43637412-43637789:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	973.514865	972.507589	1.863	0.0018137	0.90341	0.00087948	2.7664	0.0026932	973.5141743356718	28.774	0.048231	28.774	28.75	28.798	0	273	46	1.4571344	0.026681185	1.4571344	295.95813		5.4191895	0	0	0	NaN	3.1533	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3713	+		22050	12395	12745	13115							0.020235064164921823
RFRYERQQQ	9	Unmodified	_RFRYERQQQ_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.83925939435	2	655.839259	1309.66397	0.5304	0.00034786	3.0636	0.0020093	3.5941	0.0023571	656.3424718494041	33.407	0.09655	33.407	33.383	33.48	0	1227	70	0.88180584	0.042306185	0.88180584	356.91275	0	17.123535						159	5	4	NaN	NaN	NaN	0.66196	1	18935	18935		2.4615	0.12338	1	10279	+		22051	9211	12746	13116	17498	17498					0.021520431206454305
RFSIIRCFFAF	11	Unmodified	_RFSIIRCFFAF_					0	0	0			REV__ENST00000318348.8_1_12:110288987-110289074:-|nuORF	REV__ENST00000318348.8_1_12:110288987-110289074:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.8737249884	2	703.873725	1405.7329	1.1168	0.00078609	-7.3948	-0.005205	-6.278	-0.0044189	703.8682320235639	23.947	0.072401	23.947	23.923	23.995	0	1050	37	0.9900381	0.02194339	0.9900381	400.43405	0	8.875305						91	4	3	NaN	NaN	NaN	0.72342	1	20109	20109		5.9198	1.1907	1	6886.1	+		22052	11710	12747	13117	17499	17499					0.04625991095986137
RFSRCLKSQVT	11	Unmodified	_RFSRCLKSQVT_					0	0	0			REV__ENST00000253693.6_1_3:15247773-15253636:+|nuORF	REV__ENST00000253693.6_1_3:15247773-15253636:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.86134589465	2	662.861346	1323.70814	0.6521	0.00043225	6.9646	0.0046166	7.6167	0.0050488	662.8682709146505	39.044	0.072071	39.044	38.972	39.044	0	1170	73	0.91673553	0.04408604	0.91673553	371.00952	0	17.84195						132	4	3	NaN	NaN	NaN	0.76654	1	19160	19160		2.5994	1.094	1	14044	+		22053	11507	12748	13118	17500	17500					0.059233112226138473
RFSRCLKSQVT	11	Unmodified						0	0	0			REV__ENST00000253693.6_1_3:15247773-15253636:+|nuORF	REV__ENST00000253693.6_1_3:15247773-15253636:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	662.861346	1323.70814	0.6521	0.00043225	6.9646	0.0046166	7.6167	0.0050488	662.8682709146505	39.044	0.072071	39.044	38.972	39.044	0	1170	73	0.91673553	0.04408604	0.91673553	371.00952		17.84195	0	0	0	NaN	2.5994	132	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14044	+		22054	11507	12748	13118							0.059233112226138473
RFSRYTIY	8	Unmodified	_RFSRYTIY_					0	0	0			REV__ENST00000398391.6_1_17:53077004-53077139:+|nuORF	REV__ENST00000398391.6_1_17:53077004-53077139:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.19781933316676	3	369.197819	1104.57163	1.908	0.00070444	-0.16068	-5.9322E-05	1.7473	0.00064512	369.1978222675515	14.021	0.14404	14.021	13.973	14.117	0	1497	37	0.71537006	0.022299886	0.71537006	435.15723	0	13.564941						95	7	2	NaN	NaN	NaN	0.81251	1	13043	13043		5.1889	1.9279	1	6850.4	+		22055	12022	12749	13119	17501	17501					0.02352565054434308
RFSVNWFILF	10	Unmodified	_RFSVNWFILF_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.8611405419001	2	664.861141	1327.70773	1.432	0.00095209	5.0208	0.0033381	6.4528	0.0042902	665.3658888645859	29.859	0.16889	29.852	29.828	29.996	-0.0070648	1089	64	0.96624947	0.038456857	0.96473	391.036	0	15.563293						242	8	3	NaN	NaN	NaN	0.507	1	18366	18366		19.164	1.1939	1	32205			22056	300	12750	13120	17502	17502					0.056982595650879375
RFTSPEFYL	9	Unmodified	_RFTSPEFYL_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2927564154501	2	580.292756	1158.57096	1.2473	0.00072379	-9.5875	-0.0055636	-8.3403	-0.0048398	580.2876385689241	29.593	0.24129	29.586	29.514	29.755	-0.0070667	1188	82	0.90571284	0.049631655	0.9041934	367.08786	0	20.115814						377	11	3	NaN	NaN	NaN	0.33629	1	14589	14589		16.584	7.6651	1	68074	+		22057	10019	12751	13121	17503	17503					-0.0019827438529773644
RFTSPEFYL	9	Unmodified						0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.292756	1158.57096	1.8629	0.001081	-11.074	-0.0064264	-9.2115	-0.0053454	580.2864258915956	29.594	0.36203	29.594	29.474	29.836	0	1197	76	0.9001988	0.045965135	0.9001988	364.85303		18.629791	0.0039562	-0.0010992	-0.0019973	NaN	16.584	525	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77426	+		22058	10019	12751	13121							-0.0019827438529773644
RFTSPEFYL	9	Unmodified						0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	580.292756	1158.57096	1.2473	0.00072379	-9.5875	-0.0055636	-8.3403	-0.0048398	580.2876385689241	29.593	0.24129	29.586	29.514	29.755	-0.0070667	1188	82	0.90571284	0.049631655	0.9041934	367.08786		20.115814	-0.0039562	0.0006265	0.0019973	NaN	16.584	377	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68074	+		22059	10019	12751	13121							-0.0019827438529773644
RFVKWPRYIRL	11	Unmodified	_RFVKWPRYIRL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.23458194792505	4	384.234582	1532.90922	1.4107	0.00054205	-2.7523	-0.0010575	-1.3416	-0.00051549	384.48430575091135	29.352	0.096502	29.344	29.344	29.441	-0.0077209	1437	28	0.7524962	0.016689539	0.75097674	608.2147	0	13.489502						73	5	2	NaN	NaN	NaN	0.36359	1	19643	19643		23.353	18.068	1	6451.7			22060	3625	12752	13122	17504	17504					0.1640836832145851
RFVKWPRYIRL	11	Unmodified	_RFVKWPRYIRL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.23458194792505	4	384.234582	1532.90922	2.3058	0.00088595	-3.3315	-0.0012801	-1.0257	-0.00039412	384.48442761968056	29.062	0.048239	29.055	29.007	29.055	-0.0077209	1437	25	0.7524962	0.014832735	0.75097674	608.2147	0	11.98877						31	3	2	NaN	NaN	NaN	0.36359	1	19644	19644		23.353	19.444	1	2228.6			22061	3625	12752	13122	17505	17505					0.1640836832145851
RFVLVHPD	8	Unmodified	_RFVLVHPD_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.77707656150005	2	491.777077	981.5396	2.2279	0.0010956	-11.124	-0.0054706	-8.8962	-0.004375	491.77226651149357	11.572	0.048054	11.572	11.524	11.572	0	1332	37	0.8172735	0.022172093	0.8172735	331.94504	0	9.005432						47	3	2	NaN	NaN	NaN	0.72043	1	7941	7941		17.78	1.1962	1	4339.6			22062	1316	12753	13123	17506	17506					0.04809197371287155
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8058340009501	2	539.805834	1077.59712	2.4278	0.0013105	-1.7504	-0.0009449	0.67736	0.00036564	539.805228167957	25.66	0.28955	25.66	25.612	25.901	0	1251	94	0.8670771	0.05708307	0.8670771	351.73914	0	23.156372						492	13	3	NaN	NaN	NaN	0.01452	1	11870	11870		79.199	48.589	1	199220			22063	3696	12754	13124	17507	17507					0.06142039576843672
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8058340009501	2	539.805834	1077.59712	2.226	0.0012016	-0.60664	-0.00032747	1.6194	0.00087415	539.8055584035696	25.708	0.24129	25.696	25.624	25.865	-0.0116	1251	94	0.8670771	0.05708307	0.8655577	351.73914	0	23.156372						494	11	3	NaN	NaN	NaN	0.026295	1	11567	11567		63.958	31.505	1	203100			22064	3696	12754	13124	17508	17508					0.06142039576843672
RFVPIGVVSYI	11	Unmodified	_RFVPIGVVSYI_					0	0	0			REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF	REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.3687983985002	2	625.368798	1248.72304	1.0243	0.00064059	-4.7667	-0.0029809	-3.7423	-0.0023403	625.3666838256383	37.506	0.16857	37.506	37.458	37.626	0	1203	97	0.8965218	0.05888945	0.8965218	363.05392	0	23.847778						431	8	4	NaN	NaN	NaN	0.74155	1	17754	17754		4.7291	0	1	73580	+		22065	9709	12755	13125	17509	17509					0.10863126362301045
RFWRCDCRW	9	Unmodified	_RFWRCDCRW_					0	0	0			REV__ENST00000602980.1_1_7:29725056-29725440:+|nuORF	REV__ENST00000602980.1_1_7:29725056-29725440:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.2026929937333	3	443.202693	1326.58625	1.1267	0.00049934	-0.70441	-0.0003122	0.42226	0.00018715	443.2022587845756	28.484	0.1207	28.484	28.46	28.581	0	1437	37	0.7524962	0.022251546	0.7524962	456.79724	0	13.507629						102	6	2	NaN	NaN	NaN	0.56671	1	19202	19202		3.9281	0	1	12919	+		22066	12968	12756	13126	17510	17510					-0.06398009340750832
RFWVNVIKN	9	Unmodified	_RFWVNVIKN_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000483048.1_1_1:208200590-208202449:-|nuORF;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000076356|ENST00000367033|PLXNA2;ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000130827|ENST00000369682|PLXNA3;ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.3378326211001	2	588.337833	1174.66111	-0.046481	-2.7346E-05	9.3978	0.0055291	9.3514	0.0055018	588.8446908500695	53.826	0.22607	53.825	53.647	53.873	-0.00059128	1221	25	0.885486	0.014719188	0.88396657	358.83197	0	5.964752						80	9	3	NaN	NaN	NaN	0.67989	1	15081	15081		0.92586	0	1	4145.8			22067	2677;1964	12757	13127	17511	17511					0.08076819733810225
RFYEFECC	8	Unmodified	_RFYEFECC_					0	0	0		nc|ENSG00000112511|O43189-2|PHF1;ENSG00000112511|ENST00000374516|PHF1	nc|ENSG00000112511|O43189-2|PHF1	nc|ENSG00000112511|O43189-2|PHF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7149700831501	2	548.71497	1095.41539	2.0413	0.0011201	1.3609	0.00074674	3.4022	0.0018669	549.2163779122933	25.829	0.14482	25.817	25.793	25.938	-0.011602	1284	61	0.8468043	0.036881566	0.8452849	343.4447	0	14.9583435						235	7	4	NaN	NaN	NaN	0.80071	1	12300	12300		9.1232	1.5828	1	18422			22068	1874	12758	13128	17512	17512					-0.12850384502712586
RGAGHPDG	8	Unmodified	_RGAGHPDG_					0	0	0			REV__ENST00000424354.5_1_22:42229171-42262856:+|nuORF	REV__ENST00000424354.5_1_22:42229171-42262856:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.359075886	1	766.359076	765.351799	1.7656	0.0013531	2.4853	0.0019047	4.2509	0.0032577	766.3609919134805	20.622	0.096447	20.608	20.584	20.68	-0.014088	558	37	1.2873057	0.021560788	1.2857863	262.45084	0	4.3957214						73	5	2	NaN	NaN	NaN	0.8439	1	4214	4214		3.1533	0	1	4885.4	+		22069	12122	12759	13129	17513	17513					-0.04026240833286465
RGAKASPV	8	Unmodified	_RGAKASPV_					0	0	0		AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.4628126760001	1	785.462813	784.455536	1.9992	0.0015703	-0.51237	-0.00040245	1.4868	0.0011679	785.4617542546291	56.948	0.024025	56.948	56.924	56.948	0	501	49	1.3214091	0.028680325	1.3214091	269.28818	0	5.8447266						50	2	2	NaN	NaN	NaN	0.84756	1	4562	4562		1.072	0.67635	1	3718.6			22070	20	12760	13130	17514	17514					0.054686662743733905
RGAKASPV	8	Unmodified						0	0	0		AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	785.462813	784.455536	0.45294	0.00035577	3.7072	0.0029119	4.1601	0.0032676	785.4653781028242	56.947	0.023991	56.946	56.922	56.946	-0.00056458	489	46	1.3285799	0.026889324	1.3270605	270.74948		5.4797363	-0.0011671	0.0020243	0.0028257	NaN	1.072	49	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3526.7			22071	20	12760	13130							0.054686662743733905
RGAKGPPG	8	Unmodified	_RGAKGPPG_					0	0	0			REV__nc|ENSG00000204248|P13942-5|COL11A2	REV__nc|ENSG00000204248|P13942-5|COL11A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.4209478613002	1	739.420948	738.413671	-0.0013711	-1.0138E-06	3.8713	0.0028625	3.87	0.0028615	739.4241696107944	54.497	0.12028	54.497	54.449	54.569	-0.00061798	567	46	1.2819146	0.026964068	1.2803952	261.51956	0	5.5008545						95	6	2	NaN	NaN	NaN	0.84692	1	3819	3819		1.4396	0	1	6700.4	+		22072	11230	12761	13131	17515	17515					0.03400110585857874
RGALVVGK	8	Unmodified	_RGALVVGK_					0	0	0		ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.5148482465002	1	799.514848	798.507572	-0.15142	-0.00012106	3.4179	0.0027327	3.2665	0.0026116	799.5185789226657	54.546	0.12054	54.545	54.497	54.617	-0.00061798	450	58	1.3518641	0.034005404	1.3503447	275.41116	0	6.9277954						133	6	3	NaN	NaN	NaN	0.84887	1	4647	4647		0.32989	0	1	12588			22073	7343	12762	13132	17516	17516					0.10025829688140675
RGAQPGGG	8	Unmodified	_RGAQPGGG_					0	0	0		ENST00000603055.1_1_16:3614272-3617284:-|nuORF	ENST00000603055.1_1_16:3614272-3617284:-|nuORF	ENST00000603055.1_1_16:3614272-3617284:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3532622266002	1	699.353262	698.345986	0.23159	0.00016197	6.8229	0.0047716	7.0545	0.0049336	699.3577710434943	39.093	0.12061	39.093	39.044	39.165	0	711	52	1.1954219	0.030716538	1.1954219	244.1293	0	6.2729187						127	6	2	NaN	NaN	NaN	0.84887	1	3193	3193		0.32989	0	1	13530			22074	7774	12763	13133	17517	17517					-0.015253393449370378
RGCNPTRA	8	Unmodified	_RGCNPTRA_					0	0	0			REV__ENST00000456318.5_2_3:184081200-184081314:+|nuORF	REV__ENST00000456318.5_2_3:184081200-184081314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4311949715999	1	874.431195	873.423919	1.0417	0.00091093	-1.2255	-0.0010716	-0.18378	-0.0001607	874.4297550741894	32.9	0.169	32.9	32.876	33.045	0	1260	67	0.8615505	0.040539026	0.8615505	175.26637	0	8.246902						159	8	2	NaN	NaN	NaN	0.84945	1	5713	5713		0	0	1	20059	+		22075	12246	12764	13134	17518	17518					-0.017856497512411806
RGEQSEIQY	9	Unmodified	_RGEQSEIQY_					0	0	0			REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.5122436605334	3	370.512244	1108.5149	1.7899	0.00066317	7.235	0.0026807	9.0249	0.0033438	370.5148364630579	14.141	0.1441	14.141	14.069	14.213	0	1545	52	0.68561107	0.03164816	0.68561107	417.03665	0	19.25064						165	7	2	NaN	NaN	NaN	0.46215	1	13222	13222		7.1304	0.77404	1	29528	+		22076	11541	12765	13135	17519	17519					-0.03501527292746687
RGEQSEIQY	9	Unmodified						0	0	0			REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	370.512244	1108.5149	1.7899	0.00066317	7.235	0.0026807	9.0249	0.0033438	370.5148364630579	14.141	0.1441	14.141	14.069	14.213	0	1545	52	0.68561107	0.03164816	0.68561107	417.03665		19.25064	-0.0062251	-0.0010901	0.0016905	NaN	7.1304	165	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29528	+		22077	11541	12765	13135							-0.03501527292746687
RGEQSEIQY	9	Unmodified						0	0	0			REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	REV__ENST00000260952.8_2_2:190532026-190532098:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	370.512244	1108.5149	1.5243	0.00056477	9.0279	0.003345	10.552	0.0039097	370.5153866311283	14.165	0.23955	14.154	14.082	14.321	-0.011219	1548	76	0.6837494	0.04651618	0.68222994	415.90424		28.294373	0.0062251	0.0009028	-0.0016905	NaN	7.1304	263	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34287	+		22078	11541	12765	13135							-0.03501527292746687
RGFGSGSG	8	Unmodified	_RGFGSGSG_					0	0	0			REV__ENSG00000186442|ENST00000417996|KRT3	REV__ENSG00000186442|ENST00000417996|KRT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3372778114001	1	724.337278	723.330001	1.4151	0.001025	6.2156	0.0045022	7.6306	0.0055271	724.3424251261669	20.742	0.072304	20.728	20.704	20.776	-0.014088	621	55	1.2495319	0.032420874	1.2480124	255.0101	0	6.6166077						72	4	2	NaN	NaN	NaN	0.84727	1	3580	3580		1.2418	0.16982	1	4697	+	+	22079	8264	12766	13136	17520	17520					-0.0427304558185142
RGFSQLFDL	9	Unmodified	_RGFSQLFDL_					0	0	0		ENST00000434391.6_1_1:26796443-26796557:+|nuORF	ENST00000434391.6_1_1:26796443-26796557:+|nuORF	ENST00000434391.6_1_1:26796443-26796557:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5629206510998	1	1082.56292	1081.55564	1.2015	0.0013007	-5.8578	-0.0063414	-4.6563	-0.0050407	1082.557241115857	33.068	0.072342	33.066	33.042	33.114	-0.0024796	75	88	1.5741152	0.051240087	1.5725957	319.26736	0	10.3927						176	4	2	NaN	NaN	NaN	0.11656	1	11738	11738		33.425	7.3104	1	39819			22080	6986	12767	13137	17521	17521					0.018128588175159166
RGFSQLFDL	9	Unmodified						0	0	0		ENST00000434391.6_1_1:26796443-26796557:+|nuORF	ENST00000434391.6_1_1:26796443-26796557:+|nuORF	ENST00000434391.6_1_1:26796443-26796557:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1082.56292	1081.55564	0.91543	0.00099102	-6.0966	-0.0066	-5.1812	-0.0056089	1082.5565323804926	33.094	0.096504	33.094	33.045	33.142	0	78	94	1.5723488	0.05478549	1.5723488	318.90912		11.111786	0.013944	-8.3359E-05	-0.00012345	NaN	33.425	211	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45417			22081	6986	12767	13137							0.018128588175159166
RGGAGPPP	8	Unmodified	_RGGAGPPP_					0	0	0		ENSG00000198719|ENST00000366756|DLL1;nc|ENSG00000198719|O00548-2|DLL1	ENSG00000198719|ENST00000366756|DLL1	ENSG00000198719|ENST00000366756|DLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486955999	1	708.378749	707.371472	0.28481	0.00020175	-6.9795	-0.0049441	-6.6947	-0.0047424	708.3738037715444	33.551	0.096558	33.549	33.501	33.597	-0.0018463	747	115	1.1737292	0.06864941	1.1722097	239.64047	0	14.016159						196	5	3	NaN	NaN	NaN	0.84887	1	3303	3303		0.32989	0	1	20520			22082	5796	12768	13138	17522	17522					0.006081351774582799
RGGGAAAH	8	Unmodified	_RGGGAAAH_					0	0	0		ENST00000353383.5_2_17:17584934-17585090:+|nuORF	ENST00000353383.5_2_17:17584934-17585090:+|nuORF	ENST00000353383.5_2_17:17584934-17585090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3535965776	1	696.353597	695.34632	1.3665	0.00095156	-2.7323	-0.0019027	-1.3658	-0.00095111	696.3515004988392	34.517	0.19303	34.517	34.469	34.662	0	768	49	1.1610622	0.028960705	1.1610622	237.1321	0	5.914871						155	9	3	NaN	NaN	NaN	0.84692	1	3149	3149		1.4396	0	1	15388			22083	6561	12769	13139	17523	17523					-0.013539196251031171
RGGGAAAH	8	Unmodified	_RGGGAAAH_					0	0	0		ENST00000353383.5_2_17:17584934-17585090:+|nuORF	ENST00000353383.5_2_17:17584934-17585090:+|nuORF	ENST00000353383.5_2_17:17584934-17585090:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3535965776	1	696.353597	695.34632	0.85283	0.00059387	-4.4536	-0.0031013	-3.6008	-0.0025074	696.350035895768	34.516	0.26526	34.515	34.467	34.732	-0.0006485	768	49	1.1610622	0.028960705	1.1595428	237.13211	0	5.914856						171	12	3	NaN	NaN	NaN	0.84692	1	3083	3083		1.4396	0	1	16318			22084	6561	12769	13139	17524	17524					-0.013539196251031171
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	2.1401	0.00071623	-1.1719	-0.00039219	0.96826	0.00032404	334.6652453353611	56.301	0.11992	56.301	56.253	56.373	0	1527	22	0.69677675	0.013023138	0.69677675	284.83755	0	5.323761						37	6	2	NaN	NaN	NaN	0.84945	1	2510	2510		0	0	1	2123.6			22085	6408	12770	13140	17525	17525					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.3523	0.00045258	-0.32464	-0.00010864	1.0277	0.00034394	334.66550649536777	43.561	0.072025	43.561	43.513	43.585	0	1536	46	0.69119483	0.027909696	0.69119483	282.5557	0	11.409271						94	4	3	NaN	NaN	NaN	0.84945	1	2511	2511		0	0	1	8519			22086	6408	12770	13140	17526	17526					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	0.72856	0.00048691	0.53256	0.00035592	1.2611	0.00084283	668.3230533917273	35.265	0.072403	35.265	35.265	35.337	0	732	49	1.1827712	0.02892983	1.1827712	241.76169	0	5.913315						55	4	2	NaN	NaN	NaN	0.84945	1	2512	2512		0	0	1	4358.4			22087	6408	12770	13140	17527	17527					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.2775	0.00042753	0.038934	1.303E-05	1.3164	0.00044056	334.6657358269667	42.962	0.048038	42.962	42.962	43.01	0	1533	49	0.6930556	0.029771924	0.6930556	283.31638	0	12.170563						107	3	3	NaN	NaN	NaN	0.84945	1	2513	2513		0	0	1	14493			22088	6408	12770	13140	17528	17528					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.2665	0.00042387	0.4317	0.00014448	1.6983	0.00056835	334.6653874191095	42.914	0.047905	42.914	42.866	42.914	0	1533	46	0.6930556	0.027909696	0.6930556	283.31638	0	11.409271						102	3	3	NaN	NaN	NaN	0.84876	1	2514	2514		0.39566	0	1	14218			22089	6408	12770	13140	17529	17529					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.7058	0.00057088	0.14101	4.7192E-05	1.8469	0.00061808	334.6655103992801	46.126	0.071918	46.126	46.054	46.126	0	1536	37	0.69119483	0.022331417	0.69119483	282.5557	0	9.128906						64	4	2	NaN	NaN	NaN	0.84945	1	2515	2515		0	0	1	5318			22090	6408	12770	13140	17530	17530					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.9561	0.00065464	0.44048	0.00014741	2.3966	0.00080206	334.66609016182235	47.037	0.071869	47.037	46.989	47.061	0	1533	31	0.6930556	0.018607497	0.6930556	283.31638	0	7.606598						49	4	2	NaN	NaN	NaN	0.84945	1	2516	2516		0	0	1	3030.1			22091	6408	12770	13140	17531	17531					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.851	0.00061947	0.58059	0.0001943	2.4316	0.00081377	334.6653538590694	47.18	0.11979	47.18	47.108	47.228	0	1533	31	0.6930556	0.018609524	0.6930556	283.31638	0	7.607422						83	6	2	NaN	NaN	NaN	0.84945	1	2517	2517		0	0	1	4760			22092	6408	12770	13140	17532	17532					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.0103	0.00033811	2.1261	0.00071154	3.1364	0.0010497	334.6663339403392	40.296	0.096249	40.296	40.248	40.344	0	1437	64	0.7524962	0.038921177	0.7524962	307.61526	0	15.910706						86	5	2	NaN	NaN	NaN	0.84945	1	2518	2518		0	0	1	5581.3			22093	6408	12770	13140	17533	17533					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.3233	0.00044285	1.8195	0.00060891	3.1427	0.0010518	334.6662324112953	43.249	0.14373	43.249	43.153	43.297	0	1533	46	0.6930556	0.027912676	0.6930556	283.31638	0	11.410522						193	7	4	NaN	NaN	NaN	0.84945	1	2519	2519		0	0	1	20732			22094	6408	12770	13140	17534	17534					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.2878	0.00043099	2.2762	0.00076177	3.564	0.0011928	334.6664013244691	43.082	0.047905	43.082	43.058	43.106	0	1536	49	0.69119483	0.029771924	0.69119483	282.55566	0	12.170563						70	3	2	NaN	NaN	NaN	0.84945	1	2521	2521		0	0	1	10413			22095	6408	12770	13140	17535	17535					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.2805	0.00042855	2.5132	0.00084107	3.7937	0.0012696	334.6663235340224	42.65	0.11979	42.65	42.626	42.746	0	1533	49	0.6930556	0.029771924	0.6930556	283.31638	0	12.170563						171	6	3	NaN	NaN	NaN	0.84945	1	2522	2522		0	0	1	26954			22096	6408	12770	13140	17536	17536					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.4056	0.00047039	2.5347	0.00084827	3.9402	0.0013187	334.66603190501456	40.969	0.19222	40.969	40.873	41.065	0	1536	79	0.69119483	0.04836893	0.69119483	282.55566	0	19.772888						386	9	3	NaN	NaN	NaN	0.84876	1	2523	2523		0.39566	0	1	215760			22097	6408	12770	13140	17537	17537					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.4952	0.00050038	2.9976	0.0010032	4.4928	0.0015036	334.6660455710447	44.616	0.096153	44.616	44.568	44.664	0	1536	34	0.69119483	0.020469368	0.69119483	282.55566	0	8.367706						79	5	2	NaN	NaN	NaN	0.84945	1	2526	2526		0	0	1	6949.4			22098	6408	12770	13140	17538	17538					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	1.2777	0.00085393	3.5899	0.0023992	4.8676	0.0032531	668.3241505544541	35.988	0.19281	35.988	35.916	36.109	0	684	43	1.2116731	0.025267482	1.2116731	247.6693	0	5.164749						128	9	2	NaN	NaN	NaN	0.84945	1	2527	2527		0	0	1	7834.2			22099	6408	12770	13140	17539	17539					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.7981	0.00060177	3.2897	0.001101	5.0878	0.0017027	334.6666814615597	46.006	0.071861	46.006	45.934	46.006	0	1536	28	0.69119483	0.016747653	0.69119483	282.55566	0	6.8463135						53	4	2	NaN	NaN	NaN	0.84887	1	2528	2528		0.32989	0	1	3349.4			22100	6408	12770	13140	17540	17540					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.8309	0.00061274	3.4612	0.0011584	5.2921	0.0017711	334.66621576794455	46.629	0.047943	46.629	46.581	46.629	0	1536	31	0.69119483	0.018607497	0.69119483	282.55566	0	7.606598						54	3	2	NaN	NaN	NaN	0.84945	1	2529	2529		0	0	1	3893.7			22101	6408	12770	13140	17541	17541					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.4712	0.00049237	3.9948	0.0013369	5.466	0.0018293	334.66618025723983	41.618	0.24059	41.618	41.45	41.69	0	1539	82	0.68933374	0.0502429	0.68933374	281.7949	0	20.53894						415	11	3	NaN	NaN	NaN	0.84945	1	2530	2530		0	0	1	209840			22102	6408	12770	13140	17542	17542					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.66478645790005	2	334.664786	667.31502	1.1836	0.00039611	4.2909	0.001436	5.4745	0.0018321	334.6660246768847	41.377	0.048145	41.377	41.377	41.426	0	1539	58	0.68933374	0.035356104	0.68933374	281.79486	0	14.453339						82	3	2	NaN	NaN	NaN	0.84945	1	2531	2531		0	0	1	43624			22103	6408	12770	13140	17543	17543					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3222964492002	1	668.322296	667.31502	0.8587	0.00057389	5.6613	0.0037836	6.5201	0.0043575	668.3268101940548	35.554	0.096508	35.554	35.506	35.603	0	744	46	1.1755381	0.027128935	1.1755381	240.28317	0	5.545227						97	5	2	NaN	NaN	NaN	0.84945	1	2535	2535		0	0	1	10759			22104	6408	12770	13140	17544	17544					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	1.0516	0.00035192	-0.18739	-6.2713E-05	0.86416	0.0002892	334.6647984663708	55.939	0.048027	55.938	55.914	55.962	-0.00059128	1527	28	0.69677675	0.016743958	0.6952573	284.83755	0	6.844818						36	3	2	NaN	NaN	NaN	0.84876	1	2419	2419		0.39566	0	1	2191.7			22105	6408	12770	13140	17545	17545					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	1.126	0.00037683	0.20419	6.8336E-05	1.3302	0.00044516	334.66610062705297	41.737	0.19251	41.745	41.625	41.817	0.0082588	1416	46	0.76547134	0.027794778	0.7639519	312.9194	0	11.362335						161	9	2	NaN	NaN	NaN	0.84945	1	2421	2421		0	0	1	13168			22106	6408	12770	13140	17546	17546					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.88863	0.00029739	1.1287	0.00037773	2.0173	0.00067513	334.66636306892934	42.648	0.095989	42.658	42.658	42.754	0.0097313	1530	49	0.6949163	0.029768705	0.69339687	284.077	0	12.16922						232	5	4	NaN	NaN	NaN	0.84945	1	2423	2423		0	0	1	29471			22107	6408	12770	13140	17547	17547					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.89272	0.00029876	1.3038	0.00043633	2.1965	0.0007351	334.666286246291	45.069	0.071907	45.081	45.081	45.153	0.011646	1533	31	0.6930556	0.018607497	0.6915362	283.31638	0	7.606598						70	4	3	NaN	NaN	NaN	0.84945	1	2424	2424		0	0	1	4532.3			22108	6408	12770	13140	17548	17548					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3222964492002	1	668.322296	667.31502	1.3648	0.00091216	1.525	0.0010192	2.8899	0.0019314	668.3227565527204	34.323	0.16867	34.322	34.225	34.394	-0.0012474	660	49	1.2261056	0.028852463	1.2245861	250.61932	0	5.897522						130	8	2	NaN	NaN	NaN	0.84876	1	2426	2426		0.39566	0	1	9076.7			22109	6408	12770	13140	17549	17549					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	1.6431	0.00054988	1.6607	0.00055578	3.3038	0.0011057	334.6661663246818	40.895	0.21619	40.902	40.758	40.974	0.0074959	1536	70	0.69119483	0.042790234	0.6896754	282.55566	0	17.49234						455	10	3	NaN	NaN	NaN	0.84876	1	2428	2428		0.39566	0	1	236540			22110	6408	12770	13140	17550	17550					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.85883	0.00028742	2.5483	0.00085284	3.4072	0.0011403	334.6662164102396	43.056	0.071815	43.066	43.042	43.114	0.010418	1533	43	0.6930556	0.026050448	0.6915362	283.31638	0	10.649261						90	4	2	NaN	NaN	NaN	0.84945	1	2429	2429		0	0	1	13459			22111	6408	12770	13140	17551	17551					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.9515	0.00031843	2.8278	0.00094637	3.7793	0.0012648	334.6666503650492	44.686	0.047932	44.697	44.673	44.721	0.011646	1536	40	0.69119483	0.024191022	0.6896754	282.55566	0	9.88913						54	3	2	NaN	NaN	NaN	0.84945	1	2430	2430		0	0	1	4655.6			22112	6408	12770	13140	17552	17552					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3222964492002	1	668.322296	667.31502	1.2735	0.00085109	3.1535	0.0021076	4.427	0.0029586	668.3245781703897	32.103	0.072353	32.099	32.099	32.172	-0.0037575	738	43	1.179155	0.025313497	1.1776356	241.0225	0	5.174164						63	4	2	NaN	NaN	NaN	0.84876	1	2432	2432		0.39566	0	1	5015.7			22113	6408	12770	13140	17553	17553					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3222964492002	1	668.322296	667.31502	1.581	0.0010566	2.9599	0.0019782	4.5409	0.0030348	668.3241634775237	30.896	0.1207	30.891	30.866	30.987	-0.0057545	717	46	1.1918083	0.027105689	1.1902889	243.6089	0	5.5404663						85	6	2	NaN	NaN	NaN	0.84945	1	2433	2433		0	0	1	5815.4			22114	6408	12770	13140	17554	17554					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	0.97564	0.00032651	3.9495	0.0013218	4.9251	0.0016483	334.66747411092365	51.611	0.047916	51.611	51.611	51.659	0.00017166	1533	25	0.6930556	0.014885962	0.6915362	283.31638	0	6.085266						35	3	2	NaN	NaN	NaN	0.84945	1	2434	2434		0	0	1	2330.8			22115	6408	12770	13140	17555	17555					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	1.6678	0.00055817	3.9736	0.0013298	5.6414	0.001888	334.66618519121056	41.689	0.67263	41.697	41.481	42.153	0.0082588	1536	91	0.69119483	0.055792153	0.6896754	282.55566	0	22.807434						877	29	3	NaN	NaN	NaN	0.84945	1	2435	2435		0	0	1	455970			22116	6408	12770	13140	17556	17556					-0.03194492659190473
RGGGAGHG	8	Unmodified	_RGGGAGHG_					0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.66478645790005	2	334.664786	667.31502	1.1708	0.00039182	4.7608	0.0015933	5.9316	0.0019851	334.66633188157044	41.424	0.072273	41.432	41.384	41.457	0.0082626	1536	58	0.69119483	0.03535223	0.6896754	282.55566	0	14.451752						136	4	3	NaN	NaN	NaN	0.84876	1	2437	2437		0.39566	0	1	44234			22117	6408	12770	13140	17557	17557					-0.03194492659190473
RGGGAGHG	8	Unmodified						0	0	0		ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	ENST00000300584.7_1_15:78346464-78369803:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	334.664786	667.31502	0.68688	0.00022987	2.0366	0.00068158	2.7235	0.00091145	334.666564443309	44.782	0.09584	44.793	44.769	44.865	0.011646	1536	34	0.69119483	0.020469368	0.6896754	282.55566		8.367737	0.088725	-0.00042181	-0.00075972	NaN	0	101	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7390			22118	6408	12770	13140							-0.03194492659190473
RGGGERESVCK	11	Unmodified	_RGGGERESVCK_					0	0	0		ENST00000422248.6_1_3:150804532-150804739:+|nuORF	ENST00000422248.6_1_3:150804532-150804739:+|nuORF	ENST00000422248.6_1_3:150804532-150804739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.29075343025	2	589.290753	1176.56695	1.9367	0.0011413	-10.309	-0.0060752	-8.3726	-0.0049339	589.2848034146102	23.465	0.14475	23.465	23.393	23.538	0	1197	73	0.9001988	0.044100344	0.9001988	364.78738	0	17.870789						304	7	3	NaN	NaN	NaN	0.66717	1	15694	15694		9.6116	2.024	1	45484			22119	6923	12771	13141	17558	17558					-0.014266871506606549
RGGGERESVCK	11	Unmodified						0	0	0		ENST00000422248.6_1_3:150804532-150804739:+|nuORF	ENST00000422248.6_1_3:150804532-150804739:+|nuORF	ENST00000422248.6_1_3:150804532-150804739:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.290753	1176.56695	1.6271	0.00095882	-17.738	-0.010453	-16.111	-0.0094943	589.2799853625163	23.73	0.072287	23.717	23.669	23.741	-0.013048	1200	31	0.89836043	0.018389046	0.896841	364.04242		7.451782	0.12588	-0.0055038	-0.0016789	NaN	9.6116	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9039.4			22120	6923	12771	13141							-0.014266871506606549
RGGGGELP	8	Unmodified	_RGGGGELP_					0	0	0		ENST00000470369.1_1_11:2322863-2323091:-|nuORF	ENST00000470369.1_1_11:2322863-2323091:-|nuORF	ENST00000470369.1_1_11:2322863-2323091:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.384228004	1	742.384228	741.376952	-0.14908	-0.00011068	-1.6644	-0.0012356	-1.8134	-0.0013463	742.3835274330789	48.042	0.16777	48.048	47.928	48.096	0.0060997	636	43	1.2405256	0.02522695	1.2390062	253.0575	0	5.146103						134	8	2	NaN	NaN	NaN	0.82797	1	3861	3861		5.4659	0	1	10865			22121	7147	12772	13142	17559	17559					-0.004081860307223906
RGGGGGAL	8	Unmodified	_RGGGGGAL_					0	0	0		ENST00000566034.1_1_16:1032135-1032345:+|nuORF;ENSG00000005513|ENST00000293894|SOX8	ENST00000566034.1_1_16:1032135-1032345:+|nuORF	ENST00000566034.1_1_16:1032135-1032345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3474485672001	1	644.347449	643.340172	1.9425	0.0012516	-10.882	-0.0070119	-8.9397	-0.0057603	644.3404948877951	24.164	0.12061	24.151	24.127	24.248	-0.012749	627	64	1.24593	0.03783846	1.2444105	254.86209	0	7.740082						140	6	2	NaN	NaN	NaN	0.84887	1	1756	1756		0.32989	0	1	19247			22122	328	12773	13143	17560	17560					0.004235621433849701
RGGGGGGA	8	Unmodified	_RGGGGGGA_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41;ENST00000358731.8_2_5:70751498-70751573:+|nuORF;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU;ENSG00000130226|ENST00000377770|DPP6;ENSG00000079313|ENST00000170168|REXO1;ENSG00000169840|ENST00000302945|GSX1	ENSG00000163013|ENST00000520530|FBXO41;ENSG00000169840|ENST00000302945|GSX1	ENSG00000169840|ENST00000302945|GSX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.2848483104	1	588.284848	587.277572	1.7798	0.001047	-8.8057	-0.0051803	-7.0259	-0.0041333	588.2797483814484	22.163	0.096529	22.163	22.067	22.163	0	1215	58	0.8891654	0.034948587	0.8891654	182.2446	0	7.1631165						117	5	2	NaN	NaN	NaN	0.84876	1	554	554		0.39566	0	1	9254.9			22123	4196;4696	12774	13144	17561	17561					-0.03257583924823848
RGGGGGPA	8	Unmodified	_RGGGGGPA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;ENST00000371095.7_1_20:57466410-57466719:+|nuORF	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.3161484387999	1	628.316148	627.308872	1.1784	0.00074038	-1.2811	-0.00080492	-0.10272	-6.4539E-05	628.3154835606991	34.155	0.14471	34.155	34.155	34.3	0	1152	52	0.92775106	0.031188905	0.92775106	189.8776	0	6.3832397						98	7	2	NaN	NaN	NaN	0.84945	1	1341	1341		0	0	1	8064			22124	687	12775	13145	17562	17562					-0.019690108907298054
RGGGGGPC	8	Unmodified	_RGGGGGPC_					0	0	0		ENSG00000146676|ENST00000395699|PURB;PURB|p.L48Ffs*53|1|0.16|ENSG00000146676|chr7:44885205-44885206|-/A|frameshift_variant	ENSG00000146676|ENST00000395699|PURB	ENSG00000146676|ENST00000395699|PURB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.2882191287999	1	660.288219	659.280943	1.3286	0.00087727	-5.34	-0.0035259	-4.0114	-0.0026487	660.2852095158105	28.435	0.12069	28.426	28.354	28.474	-0.0089798	738	58	1.179155	0.034359694	1.1776356	241.08154	0	7.0249176						138	6	3	NaN	NaN	NaN	0.84887	1	2203	2203		0.32989	0	1	11945			22125	3571	12776	13146	17563	17563					-0.062326571424705435
RGGGGGPG	8	Unmodified	_RGGGGGPG_					0	0	0			REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3004983746	1	614.300498	613.293222	0.54654	0.00033574	-7.6545	-0.0047021	-7.1079	-0.0043664	614.2963598335036	32.056	0.048241	32.056	32.032	32.08	0	1182	88	0.9093879	0.053261995	0.9093879	186.20993	0	10.906143						92	3	2	NaN	NaN	NaN	0.84945	1	945	945		0	0	1	14513	+		22126	8961	12777	13147	17564	17564					-0.028892974077734834
RGGGGKLP	8	Unmodified	_RGGGGKLP_					0	0	0			REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.4365979255	1	741.436598	740.429321	1.1826	0.00087679	-2.8522	-0.0021147	-1.6696	-0.0012379	741.4346687109232	35.94	0.14455	35.94	35.916	36.061	0	669	46	1.2206948	0.027056336	1.2206948	249.01797	0	5.519409						87	7	2	NaN	NaN	NaN	0.84887	1	3922	3922		0.32989	0	1	7570.2	+		22127	12614	12778	13148	17565	17565					0.04872397102883497
RGGGGKLP	8	Unmodified						0	0	0			REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.436598	740.429321	1.1826	0.00087679	-2.8522	-0.0021147	-1.6696	-0.0012379	741.4346687109232	35.94	0.14455	35.94	35.916	36.061	0	669	46	1.2206948	0.027056336	1.2206948	249.01797		5.519409	0.00027698	-0.00078301	-0.00014216	NaN	0.32989	87	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7570.2	+		22128	12614	12778	13148							0.04872397102883497
RGGGGKLP	8	Unmodified						0	0	0			REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	REV__ENST00000524558.5_1_11:75273607-75273820:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.436598	740.429321	1.3883	0.0010293	-0.61544	-0.00045631	0.77284	0.00057301	741.436423013749	35.938	0.12054	35.94	35.891	36.012	0.0011024	666	46	1.2224985	0.027056336	1.2209791	249.38593		5.5194244	-0.00027698	0.00087538	0.00014216	NaN	0.32989	133	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10240	+		22129	12614	12778	13148							0.04872397102883497
RGGGHSGA	8	Unmodified	_RGGGHSGA_					0	0	0			REV__ENST00000518198.1_1_8:142138775-142151424:+|nuORF	REV__ENST00000518198.1_1_8:142138775-142151424:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3328611355	1	698.332861	697.325585	0.61458	0.00042918	2.8523	0.0019919	3.4669	0.002421	698.334461885003	33.237	0.096546	33.235	33.162	33.259	-0.0024757	666	55	1.2224985	0.03246939	1.2209791	249.66595	0	6.6311035						110	5	2	NaN	NaN	NaN	0.84756	1	3109	3109		1.072	0	1	7523.8			22130	12585	12779	13149	17566	17566					-0.03518510004766995
RGGGKGKG	8	Unmodified	_RGGGKGKG_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.4161968344001	1	716.416197	715.40892	1.4398	0.0010315	3.7736	0.0027035	5.2135	0.003735	716.4192715384248	25.105	0.096497	25.105	25.081	25.178	0	609	43	1.2567334	0.025194645	1.2567334	256.53262	0	5.1428833						69	5	2	NaN	NaN	NaN	0.84887	1	3526	3526		0.32989	0	1	4523.8			22131	2668	12780	13150	17567	17567					0.0398322644309701
RGGGSGGH	8	Unmodified	_RGGGSGGH_					0	0	0		ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.66224376894996	2	342.662244	683.309935	1.0494	0.00035957	-9.2176	-0.0031585	-8.1683	-0.002799	342.6585995459684	33.502	0.048244	33.501	33.452	33.501	-0.0018463	1512	61	0.7060759	0.03719473	0.70455647	288.5037	0	15.197815						73	3	2	NaN	NaN	NaN	0.84897	1	2820	2820		0.27539	0	1	9649			22132	5405	12781	13151	17568	17568					-0.044387965218220415
RGGGTILV	8	Unmodified	_RGGGTILV_					0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.4675637029002	1	772.467564	771.460287	1.6799	0.0012977	2.9998	0.0023173	4.6798	0.003615	772.4700923284719	44.208	0.071823	44.208	44.136	44.208	0	552	34	1.2908988	0.019760966	1.2908988	263.1467	0	4.0282288						41	4	2	NaN	NaN	NaN	0.84887	1	4378	4378		0.32989	0	1	2449.3	+		22133	10239	12782	13152	17569	17569					0.06541550417148301
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	2.2105	0.0014575	-1.7222	-0.0011356	0.48831	0.00032197	659.3564474356931	25.877	0.36197	25.877	25.732	26.094	0	750	172	1.1719203	0.10314536	1.1719203	239.60922	0	21.088943						1581	16	3	NaN	NaN	NaN	0.84887	1	2258	2258		0.32989	0	1	204220			22134	6896	12783	13153	17570	17570					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	2.0515	0.0013527	0.16392	0.00010809	2.2154	0.0014608	659.3567408629694	23.079	0.16858	23.079	23.007	23.176	0	813	160	1.1338868	0.095927596	1.1338868	231.83296	0	19.61322						824	8	4	NaN	NaN	NaN	0.84887	1	2266	2266		0.32989	0	1	98646			22135	6896	12783	13153	17571	17571					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	0.67236	0.00044333	8.1731	0.005389	8.8455	0.0058323	659.3650580392701	31.187	0.24129	31.187	31.091	31.332	0	783	106	1.1520087	0.06340277	1.1520087	235.53809	0	12.963211						403	11	2	NaN	NaN	NaN	0.84887	1	2268	2268		0.32989	0	1	33098			22136	6896	12783	13153	17572	17572					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.4024	0.00092466	-1.3052	-0.00086056	0.097206	6.4093E-05	659.3569872741218	22.187	0.26512	22.173	22.125	22.39	-0.013731	729	145	1.184579	0.08688247	1.1830596	242.19743	0	17.76387						889	12	3	NaN	NaN	NaN	0.84887	1	2174	2174		0.32989	0	1	113210			22137	6896	12783	13153	17573	17573					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.14	0.00075168	-1.0054	-0.00066293	0.1346	8.875E-05	659.357571657946	28.218	0.21721	28.209	28.088	28.305	-0.0089779	792	130	1.1465741	0.077819586	1.1450547	234.42699	0	15.910904						441	10	2	NaN	NaN	NaN	0.84887	1	2175	2175		0.32989	0	1	40730			22138	6896	12783	13153	17574	17574					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.2871	0.00084864	-1.1174	-0.00073675	0.16969	0.00011189	659.3578879069123	27.759	0.26541	27.75	27.557	27.822	-0.009552	783	175	1.1520087	0.10496056	1.1504892	235.53813	0	21.460083						809	12	2	NaN	NaN	NaN	0.84887	1	2177	2177		0.32989	0	1	106360			22139	6896	12783	13153	17575	17575					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.5713	0.0010361	-1.3831	-0.00091196	0.18821	0.0001241	659.3567287147561	22.018	0.24085	22.004	21.86	22.101	-0.013895	819	166	1.1302601	0.09962225	1.1287407	231.09145	0	20.368622						994	11	3	NaN	NaN	NaN	0.84887	1	2178	2178		0.32989	0	1	147340			22140	6896	12783	13153	17576	17576					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.3228	0.00087221	-1.0099	-0.00066585	0.31296	0.00020635	659.3576274415125	28.725	0.12065	28.716	28.668	28.789	-0.0083504	786	151	1.1501974	0.09052193	1.148678	235.16779	0	18.507996						413	6	2	NaN	NaN	NaN	0.84887	1	2180	2180		0.32989	0	1	95425			22141	6896	12783	13153	17577	17577					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.1577	0.00076333	-0.48252	-0.00031816	0.67516	0.00044518	659.3580518907102	29.231	0.12065	29.224	29.2	29.32	-0.0077209	807	109	1.1375128	0.06520367	1.1359934	232.57431	0	13.331451						293	6	2	NaN	NaN	NaN	0.84887	1	2183	2183		0.32989	0	1	36790			22142	6896	12783	13153	17578	17578					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.0711	0.00070627	-0.33043	-0.00021787	0.74071	0.00048839	659.358057365883	32.417	0.14479	32.414	32.269	32.414	-0.0031052	801	91	1.1411378	0.054313183	1.1396184	233.3155	0	11.104782						142	7	2	NaN	NaN	NaN	0.84887	1	2184	2184		0.32989	0	1	7866.7			22143	6896	12783	13153	17579	17579					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	2.5313	0.001669	-1.5856	-0.0010455	0.94569	0.00062355	659.3564318989297	25.877	0.33792	25.865	25.745	26.083	-0.0116	747	193	1.1737292	0.11581862	1.1722097	239.9791	0	23.6801						1571	15	3	NaN	NaN	NaN	0.84887	1	2185	2185		0.32989	0	1	222100			22144	6896	12783	13153	17580	17580					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	2.0755	0.0013685	-0.997	-0.00065738	1.0785	0.0007111	659.3561610316973	23.609	0.21692	23.596	23.524	23.741	-0.013048	762	178	1.1646824	0.10675299	1.163163	238.12938	0	21.826569						861	10	3	NaN	NaN	NaN	0.84887	1	2186	2186		0.32989	0	1	140000			22145	6896	12783	13153	17581	17581					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.2548	0.00082737	0.91156	0.00060104	2.1664	0.0014284	659.3573906459405	29.497	0.096497	29.49	29.466	29.562	-0.0070648	789	148	1.1483859	0.08868778	1.1468664	234.79741	0	18.13298						452	5	3	NaN	NaN	NaN	0.84887	1	2189	2189		0.32989	0	1	66044			22146	6896	12783	13153	17582	17582					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.5253	0.0010057	0.67058	0.00044215	2.1959	0.0014479	659.3574473408194	28.99	0.31373	28.982	28.838	29.151	-0.0077229	780	154	1.1538198	0.09231758	1.1523004	235.90842	0	18.875122						999	14	5	NaN	NaN	NaN	0.84887	1	2190	2190		0.32989	0	1	189020			22147	6896	12783	13153	17583	17583					0.008229645176697886
RGGKGAGG	8	Unmodified	_RGGKGAGG_					0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.1705	0.00077177	1.1662	0.00076895	2.3367	0.0015407	659.3594347538607	34.347	0.19273	34.346	34.298	34.49	-0.0012474	789	82	1.1483859	0.048905373	1.1468664	234.7974	0	9.999115						259	9	2	NaN	NaN	NaN	0.84887	1	2191	2191		0.32989	0	1	22443			22148	6896	12783	13153	17584	17584					0.008229645176697886
RGGKGAGG	8	Unmodified						0	0	0		ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	ENST00000418460.2_1_1:232941107-232941410:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.9446	0.0012822	-3.2486	-0.002142	-1.304	-0.00085981	659.3560960766557	26.167	0.048288	26.156	26.107	26.156	-0.011135	777	139	1.1556307	0.083262324	1.1541113	236.27869		17.023712	0.13913	-0.00081319	-0.0089045	NaN	0.32989	179	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16953			22149	6896	12783	13153							0.008229645176697886
RGGKSVVI	8	Unmodified	_RGGKSVVI_					0	0	0		DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.5097628686002	1	815.509763	814.502486	-0.15854	-0.00012929	5.1544	0.0042035	4.9959	0.0040742	815.514088440095	59.106	0.16814	59.106	59.01	59.178	-0.00045395	417	58	1.3715409	0.03396547	1.3700215	279.3271	0	6.917389						139	8	2	NaN	NaN	NaN	0.84887	1	4846	4846		0.32989	0	1	13255			22150	262	12784	13154	17585	17585					0.08781525825531844
RGGVSEES	8	Unmodified	_RGGVSEES_					0	0	0			REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1	REV__nc|ENSG00000050405|Q9UHB6-3|LIMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.6934065116	2	410.693407	819.37226	1.0995	0.00045155	8.7363	0.0035879	9.8358	0.0040395	410.6969821854525	20.549	0.16841	20.549	20.477	20.646	0	1425	43	0.7599118	0.025946021	0.7599118	309.4894	0	10.567047						110	8	2	NaN	NaN	NaN	0.81251	1	5009	5009		7.5404	2.0745	1	12360	+		22151	8493	12785	13155	17586	17586					-0.04465114964136774
RGHAVGGV	8	Unmodified	_RGHAVGGV_					0	0	0			REV__ENSG00000079931|ENST00000367963|MOXD1	REV__ENSG00000079931|ENST00000367963|MOXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.4161968344002	1	752.416197	751.40892	1.6037	0.0012067	1.6936	0.0012743	3.2974	0.002481	752.4176640489568	30.969	0.096546	30.964	30.94	31.036	-0.0050716	576	52	1.2765218	0.03056252	1.2750024	260.3373	0	6.2330017						91	5	2	NaN	NaN	NaN	0.84876	1	4008	4008		0.39566	0	1	6897.9	+		22152	8645	12786	13156	17587	17587					0.02327226443105701
RGHAVGGV	8	Unmodified						0	0	0			REV__ENSG00000079931|ENST00000367963|MOXD1	REV__ENSG00000079931|ENST00000367963|MOXD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	752.416197	751.40892	0.91507	0.00068851	5.2817	0.003974	6.1967	0.0046625	752.420452014124	30.994	0.1207	30.994	30.946	31.066	0	576	46	1.2765218	0.026972651	1.2765218	260.33728		5.5008545	0.015127	0.0017124	0.00075972	NaN	0.39566	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6955.5	+		22153	8645	12786	13156							0.02327226443105701
RGHAVGGV	8	Unmodified						0	0	0			REV__ENSG00000079931|ENST00000367963|MOXD1	REV__ENSG00000079931|ENST00000367963|MOXD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.416197	751.40892	1.6037	0.0012067	1.6936	0.0012743	3.2974	0.002481	752.4176640489568	30.969	0.096546	30.964	30.94	31.036	-0.0050716	576	52	1.2765218	0.03056252	1.2750024	260.3373		6.2330017	-0.015127	-0.00098728	-0.00075972	NaN	0.39566	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6897.9	+		22154	8645	12786	13156							0.02327226443105701
RGHGAGGA	8	Unmodified	_RGHGAGGA_					0	0	0		nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8	nc|ENSG00000240038|P19961-2|AMY2B	nc|ENSG00000240038|P19961-2|AMY2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.3379465134001	1	682.337947	681.33067	2.1745	0.0014838	3.6626	0.0024992	5.8372	0.0039829	682.3402026378899	19.154	0.072134	19.14	19.116	19.188	-0.014141	711	37	1.1954219	0.021678805	1.1939025	244.24652	0	4.429367						61	4	2	NaN	NaN	NaN	0.84887	1	2781	2781		0.32989	0	1	3892.4		+	22155	216	12787	13157	17588	17588					-0.02274206142146795
RGHGGAAG	8	Unmodified	_RGHGGAAG_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.3379465134001	1	682.337947	681.33067	1.235	0.00084271	2.4817	0.0016933	3.7167	0.002536	682.3395681259053	32.104	0.16891	32.104	31.983	32.152	0	705	49	1.1990347	0.028895617	1.1990347	244.98468	0	5.9039307						136	8	2	NaN	NaN	NaN	0.84651	1	2868	2868		1.6704	0	1	11694			22156	2867	12788	13158	17589	17589					-0.02274206142146795
RGHRPGELL	9	Unmodified	_RGHRPGELL_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7963319471501	2	517.796332	1033.57811	1.0961	0.00056758	-0.69546	-0.00036011	0.40068	0.00020747	517.7957324090635	28.58	0.072386	28.572	28.547	28.62	-0.0083485	1254	49	0.8652351	0.029473364	0.86371565	351.18054	0	11.962616						96	4	2	NaN	NaN	NaN	0.41766	1	9735	9735		13.003	0	1	12271	+		22157	10679	12789	13159	17590	17590					0.06266503005804225
RGKGPGKG	8	Unmodified	_RGKGPGKG_					0	0	0			REV__ENST00000372852.3_1_1:40105296-40105449:-|nuORF	REV__ENST00000372852.3_1_1:40105296-40105449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.4474969628002	1	756.447497	755.44022	1.4231	0.0010765	4.2333	0.0032022	5.6563	0.0042787	756.4503617309624	27.711	0.12062	27.702	27.653	27.774	-0.009552	534	46	1.3016734	0.026932359	1.300154	265.44138	0	5.4921265						106	6	2	NaN	NaN	NaN	0.84887	1	4088	4088		0.32989	0	1	8584.1	+		22158	11915	12790	13160	17591	17591					0.052717994771910526
RGKHMWIPTR	10	Unmodified	_RGKHMWIPTR_					0	0	0			REV__ENST00000443950.6_1_10:43882838-43883051:-|nuORF	REV__ENST00000443950.6_1_10:43882838-43883051:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3534910728	2	641.353491	1280.69243	1.6511	0.001059	-11.091	-0.007113	-9.4394	-0.006054	641.848198359473	29.015	0.14481	29.015	28.967	29.112	0	1110	43	0.95342636	0.025658667	0.95342636	385.9925	0	10.387817						163	7	3	NaN	NaN	NaN	0.76548	1	18436	18436		3.5698	0.30878	1	19509	+		22159	12200	12791	13161	17592	17592					0.06331069496218333
RGKRPSGSGRR	11	Unmodified	_RGKRPSGSGRR_					0	0	0		ENST00000506783.5_1_6:64345761-64345872:+|nuORF	ENST00000506783.5_1_6:64345761-64345872:+|nuORF	ENST00000506783.5_1_6:64345761-64345872:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.2376710196	3	405.237671	1212.69118	0.42893	0.00017382	9.4166	0.003816	9.8455	0.0039898	405.2419178526638	35.217	0.07238	35.217	35.192	35.265	0	1587	25	0.65952945	0.014916718	0.65952945	400.7492	0	9.063843						51	4	2	NaN	NaN	NaN	0.77378	1	16805	16805		0.38034	0	1	3130.8			22160	7337	12792	13162	17593	17593					0.0933457145167722
RGMAFFGL	8	Unmodified	_RGMAFFGL_					0	0	0		nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.460369835	1	898.46037	897.453093	1.5091	0.0013558	-8.7406	-0.0078531	-7.2315	-0.0064972	898.452666055057	26.601	0.072378	26.59	26.566	26.639	-0.010645	378	43	1.3947657	0.024994016	1.3932463	283.62128	0	5.082428						85	4	2	NaN	NaN	NaN	0.79379	1	5910	5910		10.052	1.0896	1	6805.4			22161	3035	12793	13163	17594	17594					0.0002649454505672111
RGMAFFGL	8	Unmodified						0	0	0		nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	898.46037	897.453093	1.7848	0.0016035	-10.808	-0.0097107	-9.0234	-0.0081072	898.4507097626891	26.601	0.072422	26.601	26.577	26.65	0	381	43	1.3929803	0.024994016	1.3929803	283.2582		5.0824585	0.005483	-0.0014424	-0.00013297	NaN	10.052	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5335.7			22162	3035	12793	13163							0.0002649454505672111
RGPGGGGH	8	Unmodified	_RGPGGGGH_					0	0	0		ENST00000309890.11_1_17:3846802-3850979:-|nuORF	ENST00000309890.11_1_17:3846802-3850979:-|nuORF	ENST00000309890.11_1_17:3846802-3850979:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3379465134001	1	694.337947	693.33067	0.73928	0.00051331	2.4347	0.0016905	3.174	0.0022038	694.3403208008313	37.094	0.21672	37.096	37.048	37.265	0.0022507	648	52	1.2333171	0.030644298	1.2317977	251.90332	0	6.2590485						227	10	3	NaN	NaN	NaN	0.84887	1	3041	3041		0.32989	0	1	22619			22163	6443	12794	13164	17595	17595					-0.028262061421514773
RGPGGGPC	8	Unmodified	_RGPGGGPC_					0	0	0			REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.66339786189997	2	350.663398	699.312243	0.89719	0.00031461	-6.8688	-0.0024086	-5.9716	-0.002094	350.66086727985976	33.576	0.096409	33.576	33.528	33.624	0	1512	43	0.7060759	0.02603066	0.7060759	288.3744	0	10.631409						77	5	2	NaN	NaN	NaN	0.84876	1	3209	3209		0.39566	0	1	9373.9	+		22164	11849	12795	13165	17596	17596					-0.04944084108365132
RGPGGGPC	8	Unmodified	_RGPGGGPC_					0	0	0			REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.66339786189997	2	350.663398	699.312243	0.95388	0.00033449	-4.7846	-0.0016778	-3.8307	-0.0013433	350.66178292102677	33.575	0.14479	33.573	33.525	33.67	-0.0018463	1512	40	0.7060759	0.024169981	0.70455647	288.3744	0	9.87146						104	7	2	NaN	NaN	NaN	0.84876	1	3143	3143		0.39566	0	1	11538	+		22165	11849	12795	13165	17597	17597					-0.04944084108365132
RGPGGGPC	8	Unmodified						0	0	0			REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	350.663398	699.312243	0.89719	0.00031461	-6.8688	-0.0024086	-5.9716	-0.002094	350.66086727985976	33.576	0.096409	33.576	33.528	33.624	0	1512	43	0.7060759	0.02603066	0.7060759	288.3744		10.631409	0.0015863	-0.00090007	0.00075972	NaN	0.39566	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9373.9	+		22166	11849	12795	13165							-0.04944084108365132
RGPGGGPC	8	Unmodified						0	0	0			REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	REV__ENST00000361684.8_1_22:38644023-38668625:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	350.663398	699.312243	0.95388	0.00033449	-4.7846	-0.0016778	-3.8307	-0.0013433	350.66178292102677	33.575	0.14479	33.573	33.525	33.67	-0.0018463	1512	40	0.7060759	0.024169981	0.70455647	288.3744		9.87146	-0.0015863	0.00056161	-0.00075972	NaN	0.39566	104	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11538	+		22167	11849	12795	13165							-0.04944084108365132
RGPGKFFFF	9	Unmodified	_RGPGKFFFF_					0	0	0		ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ENST00000533107.3_1_19:1799652-1806029:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7952693146501	2	551.795269	1101.57599	1.8544	0.0010232	3.244	0.00179	5.0984	0.0028133	551.7979211643984	26.07	0.1931	26.07	26.022	26.215	0	1212	109	0.8910048	0.066286445	0.8910048	361.3463	0	26.882416						329	9	3	NaN	NaN	NaN	0.14301	1	12912	12912		29.598	11.818	1	54967			22168	7457	12796	13166	17598	17598					0.029260742679980467
RGPGPAPV	8	Unmodified	_RGPGPAPV_					0	0	0		ENST00000464948.1_1_1:877597-878072:+|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.7164876774	2	375.716488	749.418422	2.1704	0.00081545	-4.9271	-0.0018512	-2.7567	-0.0010357	375.7148477021082	21.994	0.45818	21.994	21.85	22.308	0	1452	79	0.74322224	0.04821688	0.74322224	303.15665	0	19.66742						871	20	4	NaN	NaN	NaN	0.84692	1	4048	4048		1.4396	0	1	419950			22169	7104	12797	13167	17599	17599					0.033689947286120514
RGPGPAPV	8	Unmodified	_RGPGPAPV_					0	0	0		ENST00000464948.1_1_1:877597-878072:+|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.7164876774	2	375.716488	749.418422	2.4639	0.00092575	-5.7227	-0.0021501	-3.2587	-0.0012244	375.7144889808645	23.682	0.77166	23.669	23.428	24.199	-0.013048	1443	79	0.7487872	0.04820639	0.7472678	305.42657	0	19.663147						994	33	4	NaN	NaN	NaN	0.84692	1	3968	3968		1.4396	0	1	572970			22170	7104	12797	13167	17600	17600					0.033689947286120514
RGPGPAPV	8	Unmodified	_RGPGPAPV_					0	0	0		ENST00000464948.1_1_1:877597-878072:+|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.7164876774	2	375.716488	749.418422	1.4753	0.0005543	-4.3497	-0.0016343	-2.8744	-0.00108	375.7145446278556	22.741	0.26533	22.728	22.462	22.728	-0.01354	1452	46	0.74322224	0.027824998	0.7417028	303.15665	0	11.34967						197	12	3	NaN	NaN	NaN	0.8439	1	3970	3970		3.1533	0	1	35311			22171	7104	12797	13167	17601	17601					0.033689947286120514
RGPPDRRGPHP	11	Unmodified	_RGPPDRRGPHP_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.55852164000004	3	414.558522	1240.65374	1.1005	0.00045622	-1.6852	-0.0006986	-0.58467	-0.00024238	414.5581928597801	21.898	0.26485	21.884	21.74	22.004	-0.013895	1434	52	0.75435036	0.031531572	0.7528309	458.24915	0	19.154633						217	12	3	NaN	NaN	NaN	0.63477	1	16805	16805		5.9336	0	1	34136			22172	3034	12798	13168	17602	17602					0.04303480186081288
RGPPRGAG	8	Unmodified	_RGPPRGAG_					0	0	0			REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4270958717001	1	767.427096	766.419819	1.1839	0.00090855	8.355	0.0064118	9.5389	0.0073204	767.4339669261248	30.39	0.14479	30.383	30.335	30.48	-0.0064106	483	88	1.3321642	0.05198598	1.3306447	271.58975	0	10.59845						248	7	3	NaN	NaN	NaN	0.8439	1	4235	4235		3.1533	0	1	26646	+		22173	11798	12799	13169	17603	17603					0.027266288173677822
RGPPRGAG	8	Unmodified						0	0	0			REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.427096	766.419819	1.5793	0.001212	8.3187	0.006384	9.8979	0.0075959	767.4336316596241	30.391	0.12065	30.391	30.366	30.487	0	483	88	1.3321642	0.051997066	1.3321642	271.58975		10.600708	0.0037118	-8.1337E-06	0.00075972	NaN	3.1533	225	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24216	+		22174	11798	12799	13169							0.027266288173677822
RGPPRGAG	8	Unmodified						0	0	0			REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	REV__ENST00000344691.8_1_21:36252954-36259506:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.427096	766.419819	1.1839	0.00090855	8.355	0.0064118	9.5389	0.0073204	767.4339669261248	30.39	0.14479	30.383	30.335	30.48	-0.0064106	483	88	1.3321642	0.05198598	1.3306447	271.58975		10.59845	-0.0037118	1.9728E-05	-0.00075972	NaN	3.1533	248	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26646	+		22175	11798	12799	13169							0.027266288173677822
RGPTGWSGFAE	11	Unmodified	_RGPTGWSGFAE_					0	0	0			REV__ENST00000273153.9_1_3:39185883-39186494:-|nuORF	REV__ENST00000273153.9_1_3:39185883-39186494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7752621540502	2	582.775262	1163.53597	1.9103	0.0011133	-10.106	-0.0058896	-8.1959	-0.0047764	582.7689113925768	17.57	0.19182	17.556	17.508	17.7	-0.013567	1170	52	0.91673553	0.03122592	0.9152161	371.53674	0	12.655334						264	9	4	NaN	NaN	NaN	0.57257	1	14735	14735		15.822	2.3589	1	44119	+		22176	11592	12800	13170	17604	17604					-0.03925517193215455
RGQDGYSG	8	Unmodified	_RGQDGYSG_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27761050-27765577:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.185748655	2	420.185749	838.356944	0.96352	0.00040486	6.5245	0.0027415	7.4881	0.0031464	420.1885425887907	34.082	0.048306	34.08	34.032	34.08	-0.0012474	1434	43	0.75435036	0.025957286	0.7528309	307.11	0	10.567688						57	3	2	NaN	NaN	NaN	0.82797	1	5110	5110		5.4659	0	1	6455.3			22177	549	12801	13171	17605	17605					-0.06869981761326471
RGQLHYSVP	9	Unmodified	_RGQLHYSVP_					0	0	0		PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7828902209001	2	528.78289	1055.55123	1.6484	0.00087165	-5.4976	-0.0029071	-3.8492	-0.0020354	529.2816488992178	28.653	0.048273	28.653	28.605	28.653	0	1281	34	0.84864825	0.020283759	0.84864825	344.35406	0	8.230499						48	3	2	NaN	NaN	NaN	0.66196	1	10896	10896		2.4615	0	1	4269.6			22178	5912	12802	13172	17606	17606					0.02567394394600342
RGQNVTIFYVN	11	Unmodified	_RGQNVTIFYVN_					0	0	0		ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8462187592	2	655.846219	1309.67788	1.3137	0.00086156	4.564	0.0029933	5.8777	0.0038549	655.8495331002551	26.553	0.048277	26.542	26.518	26.566	-0.010645	1110	43	0.95342636	0.025655925	0.9519069	385.90128	0	10.384277						49	3	2	NaN	NaN	NaN	0.75376	1	18104	18104		3.9281	0.35833	1	5049.9			22179	1595	12803	13173	17607	17607					0.035432758290880884
RGRGGPPK	8	Unmodified	_RGRGGPPK_					0	0	0			REV__ENST00000487159.5_2_3:42055296-42128603:+|nuORF	REV__ENST00000487159.5_2_3:42055296-42128603:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.7461107841	2	412.746111	823.477669	1.4198	0.000586	-1.7927	-0.00073994	-0.37296	-0.00015394	412.74520949669846	29.57	0.14477	29.57	29.522	29.667	0	1278	88	0.85049206	0.053458035	0.85049206	346.3517	0	21.770111						272	7	3	NaN	NaN	NaN	0.84945	1	5071	5071		0	0	1	51141	+		22180	12431	12804	13174	17608	17608					0.058868907427950035
RGSGGGGV	8	Unmodified	_RGSGGGGV_					0	0	0			REV__ENST00000525771.1_1_19:44100805-44100889:+|nuORF	REV__ENST00000525771.1_1_19:44100805-44100889:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.3267131251	1	646.326713	645.319437	2.1893	0.001415	-6.9292	-0.0044785	-4.7399	-0.0030635	646.3222690382215	16.443	0.38359	16.43	16.334	16.717	-0.012995	777	73	1.1556307	0.043445826	1.1541113	236.37576	0	8.88652						450	17	3	NaN	NaN	NaN	0.84727	1	1837	1837		1.2418	0	1	54317	+		22181	12620	12805	13175	17609	17609					-0.017410282362902763
RGSPIAGL	8	Unmodified	_RGSPIAGL_					0	0	0			REV__nc|ENSG00000130024|Q8WUB8-3|PHF10	REV__nc|ENSG00000130024|Q8WUB8-3|PHF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4519136387001	1	770.451914	769.444637	1.8552	0.0014293	5.4763	0.0042193	7.3315	0.0056486	770.4560406497654	31.162	0.072372	31.157	31.133	31.205	-0.0050716	573	37	1.2783196	0.021572351	1.2768002	260.59436	0	4.3976746						52	4	2	NaN	NaN	NaN	0.84727	1	4277	4277		1.2418	0	1	3823	+		22182	9475	12806	13176	17610	17610					0.05069263900099941
RGTGMQTK	8	Unmodified	_RGTGMQTK_					0	0	0		ENST00000464060.5_1_3:66024158-66024281:-|nuORF	ENST00000464060.5_1_3:66024158-66024281:-|nuORF	ENST00000464060.5_1_3:66024158-66024281:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.72926908914997	2	439.729269	877.443985	0.35883	0.00015779	0.87222	0.00038354	1.2311	0.00054133	439.7304801378153	35.023	0.14479	35.023	34.999	35.144	0	1446	73	0.7469324	0.04448855	0.7469324	303.87195	0	18.099121						156	7	2	NaN	NaN	NaN	0.83211	1	5769	5769		4.9097	0	1	13730			22183	7096	12807	13177	17611	17611					0.00036101188720749633
RGVASGGN	8	Unmodified	_RGVASGGN_					0	0	0		ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.3638269129001	1	717.363827	716.35655	0.92202	0.00066143	5.8533	0.0041989	6.7753	0.0048604	717.3675300656204	20.959	0.096249	20.945	20.897	20.993	-0.014088	645	40	1.2351195	0.02343142	1.2336	252.11438	0	4.782837						105	5	2	NaN	NaN	NaN	0.84756	1	3468	3468		1.072	0	1	10064			22184	7727	12808	13178	17612	17612					-0.01297356690520246
RGVDAGHA	8	Unmodified	_RGVDAGHA_					0	0	0			REV__ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant	REV__ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.3903760144	1	782.390376	781.3831	1.409	0.0011024	0.21778	0.00017039	1.6268	0.0012728	782.3903853307692	32.127	0.072403	32.123	32.051	32.123	-0.0037575	585	31	1.2711272	0.017984629	1.2696078	259.0588	0	3.6653137						61	4	2	NaN	NaN	NaN	0.84756	1	4426	4426		1.072	0.67635	1	4625.6	+		22185	8133	12809	13179	17613	17613					-0.016336677992057957
RGVKGKSG	8	Unmodified	_RGVKGKSG_					0	0	0			REV__ENSG00000134443|ENST00000256857|GRP	REV__ENSG00000134443|ENST00000256857|GRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4737117133002	1	788.473712	787.466435	2.105	0.0016598	6.1989	0.0048877	8.3039	0.0065474	788.4783133936428	55.797	0.1682	55.797	55.749	55.917	0	504	169	1.3196158	0.1006068	1.3196158	268.90503	0	20.501144						352	8	5	NaN	NaN	NaN	0.84887	1	4597	4597		0.32989	0	1	97897	+		22186	9589	12810	13180	17614	17614					0.06420068648662891
RGVPEYGC	8	Unmodified	_RGVPEYGC_					0	0	0		ENST00000503656.1_1_5:1264517-1266637:-|nuORF;ENSG00000164362|ENST00000310581|TERT	ENST00000503656.1_1_5:1264517-1266637:-|nuORF	ENST00000503656.1_1_5:1264517-1266637:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.3981635087	1	880.398164	879.390887	0.13734	0.00012091	1.3959	0.0012289	1.5332	0.0013498	880.3986488025884	52.761	0.095802	52.761	52.737	52.833	-0.00045395	249	40	1.4713576	0.023103952	1.4698381	299.28873	0	4.6996155						65	5	2	NaN	NaN	NaN	0.84692	1	5664	5664		1.4396	0	1	3877.8			22187	4319	12811	13181	17615	17615					-0.053632765939369165
RGVVGPAA	8	Unmodified	_RGVVGPAA_					0	0	0			REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.4256988881999	1	726.425699	725.418422	-0.35509	-0.00025794	-3.77	-0.0027386	-4.1251	-0.0029966	726.4232052975882	57.139	0.048027	57.138	57.114	57.162	-0.00053787	390	52	1.3876231	0.030367494	1.3861036	283.17728	0	6.197235						91	3	3	NaN	NaN	NaN	0.84876	1	3613	3613		0.39566	0	1	10375	+		22188	12742	12812	13182	17616	17616					0.04472994728598678
RGVVGPAA	8	Unmodified						0	0	0			REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	726.425699	725.418422	1.451	0.0010541	-6.2543	-0.0045433	-4.8033	-0.0034892	726.420640262161	57.117	0.096127	57.117	57.117	57.213	0	396	49	1.3840506	0.028582692	1.3840506	282.44824		5.8329773	-0.010732	-0.00089539	-0.0010265	NaN	0.39566	89	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9830.6	+		22189	12742	12812	13182							0.04472994728598678
RGVVGPAA	8	Unmodified						0	0	0			REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.425699	725.418422	-0.35509	-0.00025794	-3.77	-0.0027386	-4.1251	-0.0029966	726.4232052975882	57.139	0.048027	57.138	57.114	57.162	-0.00053787	390	52	1.3876231	0.030367494	1.3861036	283.17728		6.197235	0.010732	0.00090931	0.0010265	NaN	0.39566	91	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10375	+		22190	12742	12812	13182							0.04472994728598678
RGWLLWAL	8	Unmodified	_RGWLLWAL_					0	0	0		nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1;nc|ENSG00000015520|Q9UHC9-3|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7978120036	2	507.797812	1013.58107	0.65462	0.00033241	-2.3255	-0.0011809	-1.6709	-0.00084848	507.79617396081375	57.163	0.02401	57.162	57.138	57.162	-0.00053787	1290	31	0.84311575	0.018444777	0.8415963	342.29147	0	7.4882812						41	2	3	NaN	NaN	NaN	0.84876	1	8962	8962		0.39566	0	1	2014.6			22191	443	12813	13183	17617	17617					0.07482378130589495
RGWLLWAL	8	Unmodified						0	0	0		nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1;nc|ENSG00000015520|Q9UHC9-3|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	nc|ENSG00000015520|Q9UHC9-4|NPC1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.797812	1013.58107	2.2681	0.0011517	-6.7763	-0.003441	-4.5083	-0.0022893	507.79536810930404	57.141	0.023975	57.141	57.141	57.165	0	1296	34	0.8394264	0.020294726	0.8394264	340.79367		8.239349	-0.010708	-0.0022605	-0.001085	NaN	0.39566	29	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1680.7			22192	443	12813	13183							0.07482378130589495
RGYDLLFGGL	10	Unmodified	_RGYDLLFGGL_					0	0	0			REV__ENST00000495397.1_1_1:161695975-161696182:+|nuORF	REV__ENST00000495397.1_1_1:161695975-161696182:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.8007486230501	2	555.800749	1109.58694	1.1887	0.0006607	-7.6063	-0.0042276	-6.4176	-0.0035669	555.7965531149116	26.722	0.19355	26.722	26.65	26.843	0	1233	76	0.87812483	0.04600489	0.87812483	356.09113	0	18.655579						203	9	2	NaN	NaN	NaN	0.64611	1	13264	13264		11.739	0.56853	1	18066	+		22193	12495	12814	13184	17618	17618					0.0365343185162601
RGYSFSLKWPK	11	Unmodified	_RGYSFSLKWPK_					0	0	0			REV__ENSG00000136872|ENST00000647789|ALDOB	REV__ENSG00000136872|ENST00000647789|ALDOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.8747792334001	2	684.874779	1367.73501	1.9554	0.0013392	5.0038	0.003427	6.9592	0.0047662	684.8779494220788	17.546	0.14397	17.532	17.484	17.628	-0.013567	1041	37	0.9955231	0.021936357	0.99400365	402.7614	0	8.874847						146	7	3	NaN	NaN	NaN	0.66717	1	18852	18852		9.6116	2.6273	1	13001	+		22194	9669	12815	13185	17619	17619					0.06584743105463531
RHAAVALG	8	Unmodified	_RHAAVALG_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.7352117468	2	397.735212	793.455871	0.5254	0.00020897	1.8811	0.00074818	2.4065	0.00095715	397.73608937569304	33.335	0.16895	33.335	33.311	33.48	0	1458	40	0.7395112	0.024122834	0.7395112	301.34268	0	9.829773						148	8	3	NaN	NaN	NaN	0.84876	1	4668	4668		0.39566	0	1	23127			22195	6174	12816	13186	17620	17620					0.050880859942253664
RHASAPAPV	9	Unmodified	_RHASAPAPV_					0	0	0			REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.25122595175	2	453.251226	904.487899	1.1308	0.00051252	-0.97184	-0.00044049	0.15893	7.2034E-05	453.2508376978971	14.069	0.19181	14.058	13.986	14.178	-0.010672	1569	43	0.6707121	0.026084423	0.6691927	272.73782	0	10.606964						147	9	2	NaN	NaN	NaN	0.47587	1	6038	6038		10.605	4.5146	1	15092	+		22196	12208	12817	13187	17621	17621					0.03183453677365833
RHASAPAPV	9	Unmodified						0	0	0			REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	453.251226	904.487899	1.4721	0.00066722	-0.99199	-0.00044962	0.48008	0.0002176	453.2508532841864	13.925	0.14401	13.925	13.901	14.045	0	1569	49	0.6707121	0.029807568	0.6707121	272.73782		12.120911	-0.066606	-1.0276E-05	0.00075972	NaN	10.605	144	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15283	+		22197	12208	12817	13187							0.03183453677365833
RHASAPAPV	9	Unmodified						0	0	0			REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	REV__ENST00000446344.3_1_16:87734644-87734848:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	453.251226	904.487899	1.1308	0.00051252	-0.97184	-0.00044049	0.15893	7.2034E-05	453.2508376978971	14.069	0.19181	14.058	13.986	14.178	-0.010672	1569	43	0.6707121	0.026084423	0.6691927	272.73782		10.606964	0.066606	7.9881E-06	-0.00075972	NaN	10.605	147	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15092	+		22198	12208	12817	13187							0.03183453677365833
RHCCGGGK	8	Unmodified	_RHCCGGGK_					0	0	0			REV__nc|ENSG00000182809|P52943-2|CRIP2	REV__nc|ENSG00000182809|P52943-2|CRIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.3555871875002	1	817.355587	816.348311	1.7443	0.0014257	-1.524	-0.0012456	0.22032	0.00018008	817.3541573556284	32.297	0.24131	32.297	32.201	32.442	0	1272	157	0.854179	0.095933795	0.854179	173.955	0	19.537064						480	11	2	NaN	NaN	NaN	0.84945	1	4968	4968		0	0	1	48629	+		22199	13187	12818	13188	17622	17622					-0.06720950203146003
RHCRPQLF	8	Unmodified	_RHCRPQLF_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|10|1|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|10|1|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|10|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7796276379501	2	528.779628	1055.5447	0.84992	0.00044942	-1.7878	-0.00094536	-0.9379	-0.00049594	528.7794311973577	21.079	0.14445	21.065	20.993	21.138	-0.014004	1299	88	0.8375814	0.053458035	0.83606195	339.8635	0	21.691559						141	7	2	NaN	NaN	NaN	0.82797	1	10670	10670		5.4659	1.4973	1	11100			22200	7866	12819	13189	17623	17623					0.019151779622461618
RHDARQADRAA	11	Unmodified	_RHDARQADRAA_					0	0	0			REV__ENST00000352385.2_1_15:65687511-65688257:-|nuORF	REV__ENST00000352385.2_1_15:65687511-65688257:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.88518591980005	3	422.885186	1265.63373	0.70628	0.00029868	-0.33166	-0.00014026	0.37462	0.00015842	422.88492707417333	20.791	0.16856	20.776	20.728	20.897	-0.014086	1464	43	0.73579943	0.02598548	0.73428	446.88293	0	15.7821045						158	8	3	NaN	NaN	NaN	0.57257	1	17325	17325		8.4563	0	1	13658	+		22201	11806	12820	13190	17624	17624					0.011536844554711934
RHDIQGVDYL	10	Unmodified	_RHDIQGVDYL_					0	0	0			REV__ENST00000574081.5_2_17:5113263-5113524:-|nuORF	REV__ENST00000574081.5_2_17:5113263-5113524:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.87540489696676	3	405.875405	1214.60439	1.8161	0.00073711	4.7281	0.001919	6.5442	0.0026561	405.87743701444145	17.042	0.071957	17.029	16.981	17.053	-0.013296	1530	49	0.6949163	0.02975899	0.69339687	422.24384	0	18.082123						72	4	2	NaN	NaN	NaN	0.70677	1	16179	16179		3.9087	0	1	6033.5	+		22202	12837	12821	13191	17625	17625					0.005667273866265532
RHDNIDRLH	9	Unmodified	_RHDNIDRLH_					0	0	0			REV__CDHR2|p.P478H|1|0.48|ENSG00000074276|chr5:176577719-176577719|C/A|missense_variant	REV__CDHR2|p.P478H|1|0.48|ENSG00000074276|chr5:176577719-176577719|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.53912711303326	3	392.539127	1174.59555	1.2525	0.00049165	2.812	0.0011038	4.0645	0.0015955	392.8755610605252	20.309	0.048117	20.309	20.309	20.357	0	1539	40	0.68933374	0.024191022	0.68933374	419.01178	0	14.704529						75	3	3	NaN	NaN	NaN	0.59509	1	15638	15638		3.261	0.79986	1	5326.3	+		22203	8192	12822	13192	17626	17626					0.01523798540779353
RHDSFAQDKG	10	Unmodified	_RHDSFAQDKG_					0	0	0			REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1160.5443104739998	1	1160.54431	1159.53703	1.9578	0.0022721	-5.1612	-0.0059898	-3.2034	-0.0037177	1160.5401216155526	33.407	0.16893	33.407	33.359	33.528	0	102	67	1.5582114	0.03889036	1.5582114	315.77377	0	7.8811646						267	8	3	NaN	NaN	NaN	0.65442	1	15118	15118		11.17	0.56537	1	20947	+		22204	12791	12823	13193	17627	17627					-0.03635302824363862
RHDSFAQDKG	10	Unmodified						0	0	0			REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1160.54431	1159.53703	1.9578	0.0022721	-5.1612	-0.0059898	-3.2034	-0.0037177	1160.5401216155526	33.407	0.16893	33.407	33.359	33.528	0	102	67	1.5582114	0.03889036	1.5582114	315.77377		7.8811646	0.0015985	-0.0018419	0.00075972	NaN	11.17	267	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20947	+		22205	12791	12823	13193							-0.03635302824363862
RHDSFAQDKG	10	Unmodified						0	0	0			REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1160.54431	1159.53703	1.4096	0.0016359	-2.2617	-0.0026248	-0.85206	-0.00098885	1160.5414694763538	33.406	0.19305	33.404	33.356	33.549	-0.0018501	102	64	1.5582114	0.037116647	1.556692	315.77377		7.5217285	-0.0015985	0.0015231	-0.00075972	NaN	11.17	211	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17879	+		22206	12791	12823	13193							-0.03635302824363862
RHGAVPLSC	9	Unmodified	_RHGAVPLSC_					0	0	0			REV__ENST00000566115.5_1_16:85833248-85833329:+|nuORF	REV__ENST00000566115.5_1_16:85833248-85833329:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4828961911	1	939.482896	938.47562	1.5366	0.0014436	-2.5492	-0.0023949	-1.0126	-0.00095128	939.4812575109153	55.1	0.048244	55.1	55.1	55.148	0	261	124	1.4642475	0.07287443	1.4642475	297.55353	0	14.8089905						102	3	2	NaN	NaN	NaN	0.66196	1	6787	6787		2.4615	0	1	7298.4	+		22207	12805	12824	13194	17628	17628					0.003920939426734549
RHGAVPLSC	9	Unmodified						0	0	0			REV__ENST00000566115.5_1_16:85833248-85833329:+|nuORF	REV__ENST00000566115.5_1_16:85833248-85833329:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	939.482896	938.47562	1.5366	0.0014436	-2.5492	-0.0023949	-1.0126	-0.00095128	939.4812575109153	55.1	0.048244	55.1	55.1	55.148	0	261	124	1.4642475	0.07287443	1.4642475	297.55353		14.8089905	0	0	0	NaN	2.4615	102	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7298.4	+		22208	12805	12824	13194							0.003920939426734549
RHGGGGGG	8	Unmodified	_RHGGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	327.65696142580003	2	327.656961	653.29937	1.8967	0.00062145	0.79972	0.00026203	2.6964	0.00088349	327.65772042963584	36.806	0.09631	36.807	36.783	36.88	0.0016785	1542	34	0.6874725	0.020471573	0.6859531	281.15472	0	8.372223						72	5	2	NaN	NaN	NaN	0.84945	1	2062	2062		0	0	1	5205.7		+	22209	200	12825	13195	17629	17629					-0.04114779176234151
RHGYGPCC	8	Unmodified	_RHGYGPCC_					0	0	0			REV__NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	REV__NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.68126465155	2	446.681265	891.347976	1.1582	0.00051734	0.14133	6.313E-05	1.2995	0.00058047	446.68107683126	55.1	0.072224	55.1	55.052	55.124	0	1407	31	0.77102906	0.018522859	0.77102906	313.59973	0	7.533783						88	4	3	NaN	NaN	NaN	0.84651	1	5940	5940		1.6704	0	1	10758	+		22210	13274	12826	13196	17630	17630					-0.10204369923008016
RHGYGPCC	8	Unmodified						0	0	0			REV__NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	REV__NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	446.681265	891.347976	1.1582	0.00051734	0.14133	6.313E-05	1.2995	0.00058047	446.68107683126	55.1	0.072224	55.1	55.052	55.124	0	1407	31	0.77102906	0.018522859	0.77102906	313.59973		7.533783	0.0012575	-0.00017496	0.00075972	NaN	1.6704	88	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10758	+		22211	13274	12826	13196							-0.10204369923008016
RHHRRIEACE	10	Unmodified	_RHHRRIEACE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.22303311120004	3	436.223033	1305.64727	1.7366	0.00075753	1.0509	0.00045843	2.7875	0.001216	436.22310846987546	15.844	0.095804	15.831	15.783	15.879	-0.012611	1413	61	0.7673241	0.037069798	0.76580465	465.8753	0	22.506653						115	5	2	NaN	NaN	NaN	0.70677	1	18036	18036		3.9087	0.87218	1	12931	+		22212	10326	12827	13197	17631	17631					0.006672189630535286
RHKQEALK	8	Unmodified	_RHKQEALK_					0	0	0			REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5901384546	1	1009.59014	1008.58286	0.29227	0.00029508	3.8677	0.0039048	4.16	0.0041999	1009.5941988834832	53.24	0.047916	53.24	53.216	53.264	-0.00053787	99	49	1.5599792	0.028277874	1.5584598	316.68854	0	5.740631						72	3	2	NaN	NaN	NaN	0.83211	1	8762	8762		4.9097	0	1	4364.3	+		22213	10198	12828	13198	17632	17632					0.07891387148549711
RHKRRRILKER	11	Unmodified	_RHKRRRILKER_					0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1547.9829552482001	1	1547.98296	1546.97568	1.7897	0.0027704	5.921	0.0091656	7.7107	0.011936	1547.997603178549	39.887	0.096313	39.887	39.863	39.959	0	363	55	1.4036897	0.032124758	1.4036897	283.61945	0	6.490906						87	5	2	NaN	NaN	NaN	0.78074	1	20694	20694		0.11306	0.11306	1	5830.6	+		22214	10741	12829	13199	17633	17633					0.22406996936069845
RHLFHCPFESF	11	Unmodified	_RHLFHCPFESF_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3349639686501	2	710.334964	1418.65538	1.0471	0.00074379	-1.6223	-0.0011524	-0.57518	-0.00040857	710.8337945394894	26.77	0.14528	26.77	26.698	26.843	0	1053	31	0.9882094	0.018290102	0.9882094	399.6589	0	7.397003						122	7	2	NaN	NaN	NaN	0.74155	1	20213	20213		4.7291	1.1496	1	12279	+		22215	10842	12830	13200	17634	17634					-0.037206468401791426
RHLHARLQRRH	11	Unmodified	_RHLHARLQRRH_					0	0	0		ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.9591310152333	3	493.959131	1478.85556	2.0961	0.0010354	-6.031	-0.0029791	-3.9349	-0.0019437	493.9568289229829	25.371	0.072393	25.371	25.346	25.419	0	1425	25	0.7599118	0.014827907	0.7599118	460.80954	0	8.991638						38	4	2	NaN	NaN	NaN	0.76975	1	20512	20512		2.0359	0.5103	1	2919.7			22216	3689	12831	13201	17635	17635					0.13529008662294473
RHLHPRWKRRL	11	Unmodified	_RHLHPRWKRRL_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.9712766203501	2	777.971277	1553.928	-0.15127	-0.00011768	0.35661	0.00027743	0.20534	0.00015975	778.4737267035745	53.672	0.064808	53.671	53.647	53.712	-0.00059128	711	55	1.1954219	0.032531977	1.1939025	483.05475	0	13.145782						159	3	4	NaN	NaN	NaN	0.78138	1	19679	19679		0	0	1	11901	+		22217	10019	12832	13202	17636	17636					0.17319342735868304
RHLLGRYIC	9	Unmodified	_RHLLGRYIC_					0	0	0		ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.5465655618667	3	377.546566	1129.61787	1.2207	0.00046086	-8.166	-0.003083	-6.9453	-0.0026222	377.54370611643213	20.67	0.16875	20.656	20.584	20.752	-0.014086	1500	49	0.71351165	0.02973634	0.7119922	433.90842	0	18.083618						160	8	2	NaN	NaN	NaN	0.40649	1	13625	13625		13.463	6.3327	1	16746			22218	6371	12833	13203	17637	17637					0.05824306684871772
RHNLNLFLF	9	Unmodified	_RHNLNLFLF_					0	0	0			REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.8890972148666	3	391.889097	1172.64546	1.8935	0.00074203	-2.0551	-0.00080536	-0.1616	-6.3329E-05	391.88846719100053	18.794	0.072029	18.78	18.731	18.804	-0.014061	1482	31	0.72465914	0.018573165	0.7231397	440.49283	0	11.289917						56	4	2	NaN	NaN	NaN	0.47587	1	15025	15025		6.4299	0	1	6960.6	+		22219	11572	12834	13204	17638	17638					0.06604533216727759
RHPLEKEYW	9	Unmodified	_RHPLEKEYW_					0	0	0		ENST00000318524.6_1_9:33294912-33295365:+|nuORF	ENST00000318524.6_1_9:33294912-33295365:+|nuORF	ENST00000318524.6_1_9:33294912-33295365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.3223795221501	2	629.32238	1256.63021	1.7958	0.0011301	-8.212	-0.005168	-6.4163	-0.0040379	629.3162927743756	18.89	0.072132	18.876	18.852	18.924	-0.014061	1134	34	0.9387595	0.020176709	0.93724006	380.1323	0	8.1701355						61	4	2	NaN	NaN	NaN	0.49999	1	17159	17159		9.6116	2.6273	1	5589.7			22220	6473	12835	13205	17639	17639					0.012156216288985888
RHQKLPEDRLF	11	Unmodified	_RHQKLPEDRLF_					0	0	0		ENST00000313288.8_1_4:1725176-1725308:+|nuORF	ENST00000313288.8_1_4:1725176-1725308:+|nuORF	ENST00000313288.8_1_4:1725176-1725308:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.268636797	3	480.268637	1437.78408	2.7509	0.0013212	5.6768	0.0027264	8.4277	0.0040476	480.6062466229786	24.14	0.07242	24.127	24.055	24.127	-0.012749	1362	22	0.79879075	0.012945652	0.7972713	484.51373	0	7.852295						40	4	2	NaN	NaN	NaN	0.78071	1	19349	19349		0.11792	0.016398	1	2444.5			22221	6455	12836	13206	17640	17640					0.08270031394408761
RHQRELML	8	Unmodified	_RHQRELML_					0	0	0		ENSG00000101883|ENST00000217999|RHOXF1	ENSG00000101883|ENST00000217999|RHOXF1	ENSG00000101883|ENST00000217999|RHOXF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5887582461	1	1082.58876	1081.58148	1.826	0.0019768	6.4542	0.0069873	8.2802	0.008964	1082.594933283786	36.324	0.16858	36.325	36.229	36.397	0.0011024	63	52	1.5811787	0.03001821	1.5796592	320.69986	0	6.0884094						141	8	2	NaN	NaN	NaN	0.3434	1	11749	11749		39.459	0	1	11569			22222	1351	12837	13207	17641	17641					0.04395429788155525
RHQYRKSCK	9	Unmodified	_RHQYRKSCK_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.54885765916663	3	402.548858	1204.62474	1.3014	0.00052389	7.3198	0.0029466	8.6212	0.0034705	402.55163586175576	15.486	0.16815	15.486	15.438	15.606	0	1494	70	0.7172283	0.042725205	0.7172283	435.8415	0	25.963013						334	8	4	NaN	NaN	NaN	0.27608	1	16613	16613		13.949	0	1	47060			22223	3847	12838	13208	17642	17642					0.030616195654147305
RHRQLGLQA	9	Unmodified	_RHRQLGLQA_					0	0	0		ENSG00000149328|ENST00000535456|GLB1L2	ENSG00000149328|ENST00000535456|GLB1L2	ENSG00000149328|ENST00000535456|GLB1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.21246283323336	3	360.212463	1077.61556	2.3537	0.00084784	-7.9745	-0.0028725	-5.6208	-0.0020247	360.20957727797173	15.844	0.11971	15.831	15.807	15.927	-0.012611	1494	46	0.7172283	0.027873337	0.71570885	436.42184	0	16.96048						103	6	2	NaN	NaN	NaN	0.55027	1	11572	11572		4.3102	0	1	12625			22224	3674	12839	13209	17643	17643					0.0798559427141754
RHRRMVISC	9	Unmodified	_RHRRMVISC_					0	0	0			REV__ENST00000567736.5_1_16:89386603-89386735:-|nuORF	REV__ENST00000567736.5_1_16:89386603-89386735:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3107689783502	2	579.310769	1156.60699	1.8549	0.0010746	3.9223	0.0022723	5.7772	0.0033468	579.3128318994608	19.516	0.096012	19.516	19.492	19.588	0	1164	37	0.9204082	0.022033453	0.9204082	373.05133	0	8.930389						99	5	3	NaN	NaN	NaN	0.62619	1	15043	15043		4.4131	0.10294	1	8560.2	+		22225	12810	12840	13210	17644	17644					0.03494581038944489
RHTEDRCR	8	Unmodified	_RHTEDRCR_					0	0	0			REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF	REV__ENST00000496676.5_1_1:6268943-6270476:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.75688082315	2	536.756881	1071.49921	0.72749	0.00039048	8.6739	0.0046558	9.4014	0.0050463	536.7622451501434	20.815	0.14447	20.801	20.752	20.897	-0.014088	1284	70	0.8468043	0.042397797	0.8452849	343.5399	0	17.200348						277	7	3	NaN	NaN	NaN	0.69825	1	11323	11323		19.164	1.3646	1	39779	+		22226	10162	12841	13211	17645	17645					-0.033680922907933564
RIAEALIM	8	Unmodified	_RIAEALIM_					0	0	0			REV__nc|ENSG00000147224|P60891-2|PRPS1	REV__nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.5284494002001	1	916.528449	915.521173	2.1228	0.0019456	-3.286	-0.0030117	-1.1631	-0.001066	916.5251637826809	26.022	0.096539	26.022	25.998	26.094	0	246	61	1.4731345	0.03553903	1.4731345	299.46802	0	7.2246094						154	5	3	NaN	NaN	NaN	0.67593	1	6342	6342		20.555	0.042131	1	18779	+		22227	8870	12842	13212	17646	17646					0.06003319405056118
RIAEALIM	8	Unmodified						0	0	0			REV__nc|ENSG00000147224|P60891-2|PRPS1	REV__nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	916.528449	915.521173	2.1228	0.0019456	-3.286	-0.0030117	-1.1631	-0.001066	916.5251637826809	26.022	0.096539	26.022	25.998	26.094	0	246	61	1.4731345	0.03553903	1.4731345	299.46802		7.2246094	-0.0063978	0.0004803	-0.00012871	NaN	20.555	154	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18779	+		22228	8870	12842	13212							0.06003319405056118
RIARVEEVIMN	11	Unmodified	_RIARVEEVIMN_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3690037512501	2	665.369004	1328.72345	1.1515	0.0007662	-3.0073	-0.0020009	-1.8557	-0.0012347	665.3674674923061	41.737	0.33663	41.745	41.577	41.913	0.0082588	1212	70	0.8910048	0.042287946	0.88948536	360.5821	0	17.113556						391	15	4	NaN	NaN	NaN	0.76488	1	18386	18386		2.8895	0.29002	1	47934	+		22229	11069	12843	13213	17647	17647					0.07224178019828287
RIARVEEVIMN	11	Unmodified						0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	665.369004	1328.72345	1.0812	0.00071942	-3.5801	-0.0023821	-2.4989	-0.0016627	665.3670190695714	41.69	0.14429	41.69	41.618	41.762	0	1215	52	0.8891654	0.031263053	0.8891654	359.8377		12.651886	-0.027402	-0.00057861	-0.00015998	NaN	2.8895	164	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17869	+		22230	11069	12843	13213							0.07224178019828287
RIARVEEVIMN	11	Unmodified						0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	665.369004	1328.72345	1.1515	0.0007662	-3.0073	-0.0020009	-1.8557	-0.0012347	665.3674674923061	41.737	0.33663	41.745	41.577	41.913	0.0082588	1212	70	0.8910048	0.042287946	0.88948536	360.5821		17.113556	0.027402	0.00018369	0.00015998	NaN	2.8895	391	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47934	+		22231	11069	12843	13213							0.07224178019828287
RIAVGMLI	8	Unmodified	_RIAVGMLI_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5386201560003	1	872.53862	871.531344	0.72218	0.00063013	5.6059	0.0048914	6.3281	0.0055215	872.5432686486888	31.356	0.096537	31.356	31.332	31.428	0	396	64	1.3840506	0.037520766	1.3840506	281.5687	0	7.6331787						152	5	3	NaN	NaN	NaN	0.84876	1	5688	5688		0.39566	0	1	24185	+		22232	8925	12844	13214	17648	17648					0.09043927130312568
RIEEIKGF	8	Unmodified	_RIEEIKGF_					0	0	0			REV__tr|U7SWN5|U7SWN5_FUSNUStress-responseA/Bbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01111PE=4SV=1	REV__tr|U7SWN5|U7SWN5_FUSNUStress-responseA/Bbarreldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01111PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5571069917003	1	991.557107	990.549831	2.1143	0.0020965	-10.908	-0.010816	-8.7941	-0.0087198	991.5470382196695	54.524	0.072334	54.524	54.5	54.572	0	189	49	1.5068626	0.028370976	1.5068626	305.9806	0	5.760956						112	4	3	NaN	NaN	NaN	0.83913	1	8244	8244		3.9685	0	1	8919.1	+		22233	13541	12845	13215	17649	17649					0.05417760305874708
RIFYHSEP	8	Unmodified	_RIFYHSEP_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|13|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7641661515	2	524.764166	1047.51378	0.58341	0.00030615	5.8423	0.0030658	6.4257	0.003372	524.7669463420559	35.361	0.048229	35.361	35.337	35.385	0	1284	46	0.8468043	0.027662694	0.8468043	343.6397	0	11.225739						58	3	2	NaN	NaN	NaN	0.83211	1	10528	10528		4.9097	0.49665	1	4403.2			22234	7816	12846	13216	17650	17650					-0.008076968710156507
RIGLLFSIVC	10	Unmodified	_RIGLLFSIVC_					0	0	0			REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF	REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8309945064501	2	560.830995	1119.64744	1.8161	0.0010185	-7.6798	-0.0043071	-5.8637	-0.0032885	560.8262431266347	17.069	0.072041	17.069	17.045	17.117	0	1197	43	0.9001988	0.025739074	0.9001988	365.0022	0	10.436401						98	4	3	NaN	NaN	NaN	0.68669	1	13674	13674		8.962	0.71716	1	11503	+		22235	12476	12847	13217	17651	17651					0.09239825910344734
RIHPRVFL	8	Unmodified	_RIHPRVFL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.3219855916501	2	519.321986	1036.62942	1.3887	0.00072119	-0.67119	-0.00034857	0.71753	0.00037263	519.321466276583	29.762	0.024147	29.755	29.731	29.755	-0.0070667	1209	37	0.892844	0.022069216	0.8913246	362.37238	0	8.957092						44	2	2	NaN	NaN	NaN	0.84455	1	9870	9870		2.7852	0.32367	1	5427.4	+		22236	11131	12848	13218	17652	17652					0.11256871770501675
RIHPRVFL	8	Unmodified						0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	519.321986	1036.62942	1.839	0.00095504	-0.052149	-2.7082E-05	1.7869	0.00092796	519.8232019269794	29.836	0.26546	29.836	29.763	30.029	0	1212	73	0.8910048	0.044162333	0.8910048	361.62592		17.923859	0.040157	0.00014731	-0.00015988	NaN	2.7852	343	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40386	+		22237	11131	12848	13218							0.11256871770501675
RIHPRVFL	8	Unmodified						0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.321986	1036.62942	1.3887	0.00072119	-0.67119	-0.00034857	0.71753	0.00037263	519.321466276583	29.762	0.024147	29.755	29.731	29.755	-0.0070667	1209	37	0.892844	0.022069216	0.8913246	362.37238		8.957092	-0.040157	-0.00049566	0.00015988	NaN	2.7852	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5427.4	+		22238	11131	12848	13218							0.11256871770501675
RIHSPANFH	9	Unmodified	_RIHSPANFH_					0	0	0			REV__ENST00000578115.1_1_17:8285406-8285628:-|nuORF	REV__ENST00000578115.1_1_17:8285406-8285628:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.18954674416665	3	360.189547	1077.54681	1.8111	0.00065233	-3.8787	-0.0013971	-2.0676	-0.00074473	360.187876482516	12.462	0.09603	12.453	12.381	12.477	-0.0088415	1479	31	0.72651637	0.018573165	0.7249969	442.07382	0	11.301453						64	5	2	NaN	NaN	NaN	0.53317	1	11559	11559		5.0169	0.39941	1	5230.3	+		22239	10222	12849	13219	17653	17653					0.011139299716887763
RIKWKHRRKN	10	Unmodified	_RIKWKHRRKN_					0	0	0		ENST00000551685.2_1_12:43963803-43964301:-|nuORF	ENST00000551685.2_1_12:43963803-43964301:-|nuORF	ENST00000551685.2_1_12:43963803-43964301:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4392780002	2	711.439278	1420.864	1.2331	0.00087725	-1.8282	-0.0013007	-0.59514	-0.0004234	712.4396172853044	19.755	0.16843	19.741	19.669	19.837	-0.014141	1278	40	0.85049206	0.02396655	0.8489726	343.9571	0	9.692566						165	8	5	NaN	NaN	NaN	0.78146	1	19264	19264		0.16111	0	1	19875			22240	7547	12850	13220	17654	17654					0.17040562578904428
RILDGKRIQY	10	Unmodified	_RILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.25069463550005	3	421.250695	1260.73025	1.5053	0.00063412	-0.62699	-0.00026412	0.87835	0.00037	421.25042609495307	15.438	0.14422	15.438	15.342	15.486	0	1404	46	0.77288127	0.027782738	0.77288127	469.424	0	16.87439						172	7	3	NaN	NaN	NaN	0.31827	1	18017	18017		26.989	13.352	1	20867			22241	3383	12851	13221	17655	17655					0.11031858962724073
RILDGKRIQY	10	Unmodified	_RILDGKRIQY_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.25069463550005	3	421.250695	1260.73025	2.1535	0.00090714	-2.1069	-0.00088754	0.046537	1.9604E-05	421.24996039291904	15.915	0.071794	15.903	15.879	15.951	-0.012611	1401	34	0.77473325	0.020371795	0.7732138	470.54886	0	12.373199						62	4	2	NaN	NaN	NaN	0.13207	1	17236	17236		41.55	27.1	1	5374.6			22242	3383	12851	13221	17656	17656					0.11031858962724073
RILKFSAPEWP	11	Unmodified	_RILKFSAPEWP_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.37715474685	2	672.377155	1342.73976	0.75525	0.00050781	-4.3015	-0.0028922	-3.5462	-0.0023844	672.374314367669	41.089	0.21627	41.089	40.945	41.161	0	1185	52	0.90755045	0.031235993	0.90755045	367.23853	0	12.639618						153	10	2	NaN	NaN	NaN	0.76304	1	19461	19461		3.2116	1.287	1	20036			22243	813	12852	13222	17657	17657					0.08209627248220386
RILKFSAPEWP	11	Unmodified						0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.377155	1342.73976	0.94866	0.00063786	-0.49058	-0.00032985	0.45808	0.000308	672.3768228489419	40.943	0.096115	40.95	40.854	40.95	0.0074921	1185	31	0.90755045	0.018377125	0.906031	367.2385		7.436249	-0.069267	0.0026872	-0.00075972	NaN	3.2116	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6975			22244	813	12852	13222							0.08209627248220386
RINDEIGV	8	Unmodified	_RINDEIGV_					0	0	0		tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	tr|U7SSW2|U7SSW2_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01396PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.24834891180006	2	458.248349	914.482145	1.0956	0.00050208	5.8728	0.0026912	6.9684	0.0031933	458.2509201718035	55.1	0.02412	55.1	55.1	55.124	0	1332	52	0.8172735	0.031398535	0.8172735	332.28107	0	12.765778						86	2	3	NaN	NaN	NaN	0.82332	1	6312	6312		6.0903	0	1	11758			22245	13836	12853	13223	17658	17658					0.021483103750597365
RIRWVFKR	8	Unmodified	_RIRWVFKR_					0	0	0		ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.57696498480004	3	387.576965	1159.70907	0.65928	0.00025552	5.9391	0.0023019	6.5984	0.0025574	387.91364484219366	33.406	0.24135	33.404	33.38	33.621	-0.0018501	1479	58	0.72651637	0.03529471	0.7249969	441.6789	0	21.457123						183	11	2	NaN	NaN	NaN	0.82212	1	14634	14634		6.2502	0	1	28428			22246	6031	12854	13224	17659	17659					0.13559938444495856
RISDFHETY	9	Unmodified	_RISDFHETY_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2750949785501	2	584.275095	1166.53564	2.6838	0.0015681	-1.1908	-0.00069575	1.493	0.00087232	584.2738371426468	15.891	0.095738	15.879	15.879	15.975	-0.012611	1215	31	0.8891654	0.018395007	0.88764596	360.35217	0	7.454956						52	5	2	NaN	NaN	NaN	0.40649	1	14820	14820		13.463	5.2182	1	4112.9			22247	5303	12855	13225	17660	17660					-0.04096936913083482
RISDFHETY	9	Unmodified	_RISDFHETY_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2750949785501	2	584.275095	1166.53564	2.2156	0.0012945	0.37817	0.00022096	2.5938	0.0015155	584.2747571883724	15.796	0.095841	15.783	15.759	15.855	-0.012611	1215	34	0.8891654	0.020233393	0.88764596	360.35217	0	8.199982						90	5	3	NaN	NaN	NaN	0.31471	1	14821	14821		17.97	7.3647	1	8000.9			22248	5303	12855	13225	17661	17661					-0.04096936913083482
RISDFHETY	9	Unmodified						0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.275095	1166.53564	1.9584	0.0011442	-0.25733	-0.00015035	1.7011	0.00099389	584.27326508686	15.75	0.14395	15.75	15.702	15.846	0	1215	34	0.8891654	0.020233393	0.8891654	360.35217		8.199982	-0.064417	0.00038258	0.00075972	NaN	13.463	120	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13108			22249	5303	12855	13225							-0.04096936913083482
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.81365903305	2	528.813659	1055.61277	1.8653	0.00098638	-1.1388	-0.0006022	0.72649	0.00038418	528.8130728885169	28.774	0.36197	28.774	28.629	28.991	0	1287	103	0.8449601	0.06265128	0.8449601	342.85724	0	25.421814						917	16	4	NaN	NaN	NaN	0.024359	1	10912	10912		66.481	31.185	1	222060			22250	477	12856	13226	17662	17662					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.81365903305	2	528.813659	1055.61277	1.1601	0.0006135	-0.032145	-1.6999E-05	1.128	0.0005965	528.8134715881586	28.797	0.31373	28.789	28.644	28.958	-0.0083504	1284	103	0.8468043	0.06265128	0.8452849	343.60553	0	25.421814						975	14	4	NaN	NaN	NaN	0.084037	1	10689	10689		38.131	22.668	1	219330			22251	477	12856	13226	17663	17663					0.08718326093890028
RITAHCLAY	9	Unmodified	_RITAHCLAY_					0	0	0		ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2738437683	2	524.273844	1046.53313	2.0096	0.0010536	2.4003	0.0012584	4.4099	0.002312	524.2757459732933	18.173	0.14386	18.173	18.149	18.292	0	1269	58	0.8560222	0.03502804	0.8560222	347.38464	0	14.214813						258	7	5	NaN	NaN	NaN	0.3389	1	10488	10488		16.417	3.8288	1	48211			22252	4495	12857	13227	17664	17664					0.011729361482366585
RIYVHLLED	9	Unmodified	_RIYVHLLED_					0	0	0			REV__ENST00000543302.6_1_18:13760016-13760190:+|nuORF	REV__ENST00000543302.6_1_18:13760016-13760190:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3193055169501	2	579.319306	1156.62406	2.0106	0.0011648	1.9406	0.0011242	3.9511	0.002289	579.3198099936636	17.21	0.095896	17.196	17.149	17.244	-0.013567	1173	40	0.91489893	0.023876011	0.9133795	370.8183	0	9.677216						90	5	3	NaN	NaN	NaN	0.66196	1	14544	14544		2.4615	0	1	6046.8	+		22253	12705	12858	13228	17665	17665					0.05201103397371298
RKAGGGGG	8	Unmodified	_RKAGGGGG_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;ENST00000301730.12_3_16:2314685-2318093:-|nuORF;ENST00000320225.9_2_16:2314685-2318195:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045002	1	659.358348	658.351071	0.89561	0.00059053	-0.24542	-0.00016182	0.65019	0.00042871	659.3584625058305	31.887	0.048252	31.887	31.839	31.887	0	792	73	1.1465741	0.043483138	1.1465741	234.42699	0	8.890503						99	3	2	NaN	NaN	NaN	0.84945	1	2259	2259		0	0	1	6646.7			22254	7644	12859	13229	17666	17666					0.008229645176697886
RKAGGGGG	8	Unmodified	_RKAGGGGG_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;ENST00000301730.12_3_16:2314685-2318093:-|nuORF;ENST00000320225.9_2_16:2314685-2318195:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045002	1	659.358348	658.351071	1.6718	0.0011023	-0.19778	-0.00013041	1.4741	0.00097193	659.3581174024878	36.709	0.096085	36.711	36.663	36.759	0.0016747	726	40	1.1863867	0.023491621	1.1848673	242.567	0	4.803055						66	5	2	NaN	NaN	NaN	0.84945	1	2188	2188		0	0	1	5527.2			22255	7644	12859	13229	17667	17667					0.008229645176697886
RKAGGGGG	8	Unmodified						0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;ENST00000301730.12_3_16:2314685-2318093:-|nuORF;ENST00000320225.9_2_16:2314685-2318195:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	1.0728	0.00070739	-6.3138	-0.004163	-5.2409	-0.0034557	659.3544373365277	32.007	0.072386	32.003	31.954	32.027	-0.0037575	792	82	1.1465741	0.048894882	1.1450547	234.42702		9.996979	0.057923	-0.0024522	-0.00075972	NaN	0	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5510.4			22256	7644	12859	13229							0.008229645176697886
RKAWNDRDNRC	11	Unmodified	_RKAWNDRDNRC_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;ENST00000479506.1_1_1:245517197-245533964:+|nuORF	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3443829495001	2	717.344383	1432.67421	1.3152	0.00094342	-9.9961	-0.0071707	-8.681	-0.0062272	717.8391859947608	28.629	0.24135	28.629	28.508	28.75	0	1041	82	0.9955231	0.04935938	0.9955231	402.57877	0	19.960388						364	11	3	NaN	NaN	NaN	0.65755	1	20286	20286		10.244	1.3246	1	37358			22257	4187	12860	13230	17668	17668					-0.02481717216414836
RKAWNDRDNRC	11	Unmodified						0	0	0		ENSG00000162849|ENST00000407071|KIF26B;ENST00000479506.1_1_1:245517197-245533964:+|nuORF	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	717.344383	1432.67421	1.0028	0.00071936	-8.5312	-0.0061198	-7.5284	-0.0054004	717.337871889635	28.652	0.28953	28.644	28.499	28.789	-0.0083485	1032	94	1.0010062	0.056678057	0.99948686	404.7961		22.919952	0.0075072	0.00069175	0.0019819	NaN	10.244	485	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47129			22258	4187	12860	13230							-0.02481717216414836
RKDFCRISQK	10	Unmodified	_RKDFCRISQK_					0	0	0		ENST00000393328.6_1_17:47677280-47677397:-|nuORF	ENST00000393328.6_1_17:47677280-47677397:-|nuORF	ENST00000393328.6_1_17:47677280-47677397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.8482385194001	2	640.848239	1279.68192	1.2068	0.00077337	2.6402	0.0016919	3.847	0.0024653	640.8497613992638	42.912	0.14391	42.922	42.874	43.018	0.010418	1176	55	0.9130621	0.033071637	0.91154265	369.65417	0	13.389099						119	7	3	NaN	NaN	NaN	0.73444	1	17602	17602		5.6942	0	1	7959.2			22259	6764	12861	13231	17669	17669					0.053270420511580596
RKDFCRISQK	10	Unmodified						0	0	0		ENST00000393328.6_1_17:47677280-47677397:-|nuORF	ENST00000393328.6_1_17:47677280-47677397:-|nuORF	ENST00000393328.6_1_17:47677280-47677397:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	640.848239	1279.68192	1.3552	0.0008685	3.0807	0.0019743	4.4359	0.0028428	640.8495970385163	42.938	0.12007	42.938	42.914	43.034	0	1176	55	0.9130621	0.033075213	0.9130621	369.65417		13.390533	0.0075801	0.00032049	0.00075972	NaN	5.6942	148	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8977.8			22260	6764	12861	13231							0.053270420511580596
RKEQFHLDT	9	Unmodified	_RKEQFHLDT_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.304186769	2	587.304187	1172.59382	1.1041	0.00064845	-7.1323	-0.0041888	-6.0281	-0.0035404	587.3003980824011	34.009	0.12068	34.008	33.936	34.056	-0.0012474	1170	34	0.91673553	0.020202816	0.9152161	371.5031	0	8.187103						71	6	2	NaN	NaN	NaN	0.49672	1	15017	15017		9.746	1.5012	1	6221.9	+		22261	8399	12862	13232	17670	17670					0.014427447321850195
RKEQFTAMR	9	Unmodified	_RKEQFTAMR_					0	0	0		nc|ENSG00000127314|P61224-3|RAP1B	nc|ENSG00000127314|P61224-3|RAP1B	nc|ENSG00000127314|P61224-3|RAP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.54148018396666	3	389.54148	1165.60261	1.1452	0.0004461	-9.6499	-0.003759	-8.5047	-0.0033129	389.53750783472674	20.766	0.072289	20.766	20.742	20.814	0	1530	31	0.6949163	0.018607497	0.6949163	422.44293	0	11.311554						71	4	3	NaN	NaN	NaN	0.44834	1	15324	15324		11.739	0.77375	1	5688.5			22262	7940	12863	13233	17671	17671					0.02643395097015855
RKERTRRSIPR	11	Unmodified	_RKERTRRSIPR_					0	0	0			REV__ENST00000231238.9_1_5:159437635-159437797:+|nuORF	REV__ENST00000231238.9_1_5:159437635-159437797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.6306800189667	3	485.63068	1453.87021	2.0813	0.0010108	2.616	0.0012704	4.6973	0.0022812	485.6322146899788	17.642	0.14384	17.628	17.58	17.724	-0.013786	1326	31	0.8209676	0.018468738	0.81944823	497.9129	0	11.201202						90	7	2	NaN	NaN	NaN	0.72321	1	19420	19420		5.9336	4.0834	1	8865.1	+		22263	11481	12864	13234	17672	17672					0.16143036019798274
RKFIGNPFTP	10	Unmodified	_RKFIGNPFTP_					0	0	0		nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8298404135002	2	588.82984	1175.64513	2.4485	0.0014417	-4.9856	-0.0029357	-2.5371	-0.0014939	588.8281683712029	25.998	0.048277	25.998	25.998	26.046	0	1197	31	0.9001988	0.018383086	0.9001988	364.79065	0	7.4494324						28	3	2	NaN	NaN	NaN	0.73444	1	15676	15676		5.6942	0.96509	1	1968.8			22264	685	12865	13235	17673	17673					0.06433113496905207
RKFIGNPFTP	10	Unmodified						0	0	0		nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	nc|ENSG00000065413|Q8N8A2-4|ANKRD44	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	588.82984	1175.64513	2.1099	0.0012424	-3.6314	-0.0021383	-1.5215	-0.00089589	588.8274666230379	25.949	0.048256	25.938	25.938	25.986	-0.0116	1197	64	0.9001988	0.038585663	0.8986794	364.79065		15.6362	-0.030045	0.00063783	-0.00075972	NaN	5.6942	67	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8519.7			22265	685	12865	13235							0.06433113496905207
RKGGGGGA	8	Unmodified	_RKGGGGGA_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.3006	0.00085757	-2.6209	-0.0017281	-1.3202	-0.00087052	659.358357631006	27.615	0.024103	27.615	27.591	27.615	0	735	154	1.1809633	0.092277884	1.1809633	241.45815	0	18.867035						181	2	2	NaN	NaN	NaN	0.84727	1	2244	2244		1.2418	0.91196	1	18457	+		22266	8969	12866	13236	17674	17674					0.0082296451765842
RKGGGGGA	8	Unmodified	_RKGGGGGA_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3583476045001	1	659.358348	658.351071	1.45	0.00095609	-1.5554	-0.0010255	-0.10533	-6.9449E-05	659.3572551301011	30.294	0.19307	30.294	30.27	30.463	0	798	97	1.1429502	0.057977557	1.1429502	233.68605	0	11.853989						362	9	2	NaN	NaN	NaN	0.84727	1	2252	2252		1.2418	0	1	43164	+		22267	8969	12866	13236	17675	17675					0.0082296451765842
RKGGGGGA	8	Unmodified	_RKGGGGGA_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3583476045001	1	659.358348	658.351071	0.75443	0.00049744	-0.20079	-0.00013239	0.55364	0.00036505	659.3583108789824	31.572	0.24137	31.568	31.423	31.664	-0.0044155	807	112	1.1375128	0.06701136	1.1359934	232.57431	0	13.701035						502	11	2	NaN	NaN	NaN	0.84692	1	2182	2182		1.4396	1.0439	1	61363	+		22268	8969	12866	13236	17676	17676					0.0082296451765842
RKGGGGGA	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.45	0.00095609	-1.5554	-0.0010255	-0.10533	-6.9449E-05	659.3572551301011	30.294	0.19307	30.294	30.27	30.463	0	798	97	1.1429502	0.057977557	1.1429502	233.68605		11.853989	0	0	0	NaN	1.2418	362	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43164	+		22269	8969	12866	13236							0.0082296451765842
RKGGGGGA	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	1.3006	0.00085757	-2.6209	-0.0017281	-1.3202	-0.00087052	659.358357631006	27.615	0.024103	27.615	27.591	27.615	0	735	154	1.1809633	0.092277884	1.1809633	241.45815		18.867035	-0.067208	-0.00082922	0.015237	NaN	1.2418	181	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18457	+		22270	8969	12866	13236							0.0082296451765842
RKGGGGGA	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.358348	658.351071	0.85332	0.00056265	-1.1439	-0.00075427	-0.29062	-0.00019162	659.357569781441	31.573	0.33792	31.573	31.452	31.79	0	807	112	1.1375128	0.06701136	1.1375128	232.57431		13.70105	0.0027441	-0.00021738	0.00075972	NaN	1.4396	587	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61476	+		22271	8969	12866	13236							0.0082296451765842
RKGGGGGA	8	Unmodified						0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.358348	658.351071	0.75443	0.00049744	-0.20079	-0.00013239	0.55364	0.00036505	659.3583108789824	31.572	0.24137	31.568	31.423	31.664	-0.0044155	807	112	1.1375128	0.06701136	1.1359934	232.57431		13.701035	-0.0027441	0.0004045	-0.00075972	NaN	1.4396	502	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61363	+		22272	8969	12866	13236							0.0082296451765842
RKGGGPAG	8	Unmodified	_RKGGGPAG_					0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3896477329	1	699.389648	698.382371	-0.48703	-0.00034062	-2.9245	-0.0020454	-3.4116	-0.002386	699.3878291981898	54.522	0.09642	54.521	54.497	54.593	-0.0006218	531	49	1.3034686	0.02872634	1.3019491	266.1944	0	5.8664856						85	5	2	NaN	NaN	NaN	0.84945	1	3132	3132		0	0	1	5563.1	+		22273	10799	12867	13237	17677	17677					0.021115375517524626
RKGGGPAG	8	Unmodified						0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	699.389648	698.382371	1.2376	0.00086556	-4.4951	-0.0031438	-3.2575	-0.0022783	699.386115544851	54.524	0.12048	54.524	54.5	54.62	0	537	46	1.2998781	0.026932359	1.2998781	265.46118		5.500122	0.0013694	-0.00060689	-0.0010355	NaN	0	90	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6752.6	+		22274	10799	12867	13237							0.021115375517524626
RKGGGPAG	8	Unmodified						0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	699.389648	698.382371	-0.48703	-0.00034062	-2.9245	-0.0020454	-3.4116	-0.002386	699.3878291981898	54.522	0.09642	54.521	54.497	54.593	-0.0006218	531	49	1.3034686	0.02872634	1.3019491	266.1944		5.8664856	-0.0013694	0.00049155	0.0010355	NaN	0	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5563.1	+		22275	10799	12867	13237							0.021115375517524626
RKGGGPVG	8	Unmodified	_RKGGGPVG_					0	0	0		ENST00000471374.1_1_22:32340965-32341082:+|nuORF	ENST00000471374.1_1_22:32340965-32341082:+|nuORF	ENST00000471374.1_1_22:32340965-32341082:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.4209478613001	1	727.420948	726.413671	1.46	0.0010621	5.7742	0.0042002	7.2342	0.0052623	727.4251141720114	56.589	0.21568	56.589	56.469	56.684	0	615	58	1.2531329	0.034205556	1.2531329	255.72487	0	6.980255						185	10	2	NaN	NaN	NaN	0.84876	1	3713	3713		0.39566	0	1	15182			22276	7153	12868	13238	17678	17678					0.039521105858511874
RKGHPARPEA	10	Unmodified	_RKGHPARPEA_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.8125133276002	2	559.812513	1117.61047	2.5949	0.0014527	-9.7728	-0.0054709	-7.1779	-0.0040183	559.8070138973253	25.805	0.048286	25.793	25.769	25.817	-0.0116	1269	31	0.8560222	0.01843077	0.85450274	347.09766	0	7.4732666						56	3	3	NaN	NaN	NaN	0.77928	1	13188	13188		0.69115	0	1	3914.6			22277	6546	12869	13239	17679	17679					0.05637290408822082
RKGHPARPEA	10	Unmodified						0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.812513	1117.61047	2.0337	0.0011385	-14.202	-0.0079503	-12.168	-0.0068118	559.8045137071277	25.781	0.048267	25.781	25.781	25.829	0	1266	46	0.85786515	0.027635753	0.85786515	347.84497		11.205688	-0.0061371	-0.0031765	0.0016812	NaN	0.69115	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5422.6			22278	6546	12869	13239							0.05637290408822082
RKGPGPSG	8	Unmodified	_RKGPGPSG_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4158624834001	1	755.415862	754.408586	1.7556	0.0013262	5.6948	0.0043019	7.4504	0.0056282	755.4200242634546	55.028	0.047966	55.028	55.004	55.052	0	543	40	1.296287	0.023346424	1.296287	264.3494	0	4.7609863						50	3	2	NaN	NaN	NaN	0.84727	1	4149	4149		1.2418	0	1	4305.4			22279	4114	12870	13240	17680	17680					0.021558067232376743
RKHKCLIL	8	Unmodified	_RKHKCLIL_					0	0	0		ENST00000481894.1_1_1:115138166-115167938:-|nuORF	ENST00000481894.1_1_1:115138166-115167938:-|nuORF	ENST00000481894.1_1_1:115138166-115167938:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.81822148220004	2	505.818221	1009.62189	1.9	0.00096108	-6.4952	-0.0032854	-4.5952	-0.0023243	505.8149424356044	22.621	0.048258	22.621	22.597	22.645	0	1296	31	0.8394264	0.01844871	0.8394264	340.81158	0	7.4902954						44	3	2	NaN	NaN	NaN	0.8439	1	8977	8977		3.1533	0	1	4177.8			22280	7208	12871	13241	17681	17681					0.11746396178580198
RKLCGERIEI	10	Unmodified	_RKLCGERIEI_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.232535165	3	406.232535	1215.67578	1.3283	0.00053959	-1.187	-0.00048221	0.14124	5.7378E-05	406.2318116579824	19.156	0.047989	19.156	19.132	19.18	0	1434	52	0.75435036	0.031517863	0.75435036	458.35257	0	19.150635						75	3	2	NaN	NaN	NaN	0.75466	1	16888	16888		3.5945	0	1	8875.5			22281	13774	12872	13242	17682	17682					0.07656523819628092
RKMQCNLCLW	10	Unmodified	_RKMQCNLCLW_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2120891888667	3	432.212089	1293.61444	1.0606	0.00045839	0.56479	0.00024411	1.6254	0.0007025	432.54656973617546	22.597	0.096478	22.583	22.583	22.68	-0.01354	1440	52	0.7506418	0.03152466	0.7491224	455.79108	0	19.141846						82	5	2	NaN	NaN	NaN	0.71736	1	17815	17815		3.261	0.55681	1	11285	+		22282	11003	12873	13243	17683	17683					-0.02062447475668705
RKMQCNLCLW	10	Unmodified						0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	432.212089	1293.61444	1.413	0.0006107	1.4227	0.00061489	2.8356	0.0012256	432.21296698166924	22.525	0.048185	22.525	22.525	22.573	0	1440	43	0.7506418	0.02596569	0.7506418	455.79108		15.766418	-0.029105	0.00071908	0.00075972	NaN	3.261	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6048.8	+		22283	11003	12873	13243							-0.02062447475668705
RKMQCNLCLW	10	Unmodified						0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	432.212089	1293.61444	1.0606	0.00045839	0.56479	0.00024411	1.6254	0.0007025	432.54656973617546	22.597	0.096478	22.583	22.583	22.68	-0.01354	1440	52	0.7506418	0.03152466	0.7491224	455.79108		19.141846	0.029105	-0.00039326	-0.00075972	NaN	3.261	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11285	+		22284	11003	12873	13243							-0.02062447475668705
RKNPLAHV	8	Unmodified	_RKNPLAHV_					0	0	0		ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5581100447001	1	934.55811	933.550834	1.4339	0.0013401	1.5176	0.0014183	2.9515	0.0027583	934.5578640685997	32.32	0.072422	32.316	32.244	32.316	-0.0037613	288	40	1.4482387	0.023138404	1.4467193	294.32278	0	4.702362						65	4	2	NaN	NaN	NaN	0.84876	1	6557	6557		0.39566	0	1	4927.1			22285	6796	12874	13244	17684	17684					0.08140019465417936
RKNPLAHV	8	Unmodified						0	0	0		ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	ENST00000396504.6_1_22:41923400-41923763:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.55811	933.550834	1.415	0.0013224	-0.18301	-0.00017104	1.232	0.0011514	934.5554665246254	32.104	0.024124	32.104	32.104	32.128	0	288	40	1.4482387	0.023138404	1.4482387	294.32278		4.702362	-0.10616	-0.00087971	0.00075972	NaN	0.39566	43	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3228.3			22286	6796	12874	13244							0.08140019465417936
RKPFLLTI	8	Unmodified	_RKPFLLTI_					0	0	0			REV__ENSG00000139209|ENST00000266579|SLC38A4	REV__ENSG00000139209|ENST00000266579|SLC38A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.6349633822002	1	987.634963	986.627687	1.6361	0.0016159	-3.5394	-0.0034956	-1.9033	-0.0018797	987.6315398899732	38.73	0.14418	38.734	38.686	38.83	0.0040245	204	67	1.4979934	0.039034843	1.496474	304.1962	0	7.9267883						198	7	2	NaN	NaN	NaN	0.63138	1	7948	7948		23.334	0	1	27035	+		22287	9758	12875	13245	17685	17685					0.13383817961903333
RKPNQLDGPPS	11	Unmodified	_RKPNQLDGPPS_					0	0	0			REV__ENSG00000160049|ENST00000377038|DFFA	REV__ENSG00000160049|ENST00000377038|DFFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8227436629002	2	604.822744	1207.63093	1.4095	0.00085249	-3.1028	-0.0018767	-1.6934	-0.0010242	604.8206990693483	15.27	0.048055	15.27	15.27	15.318	0	1137	31	0.9369253	0.018343449	0.9369253	379.5568	0	7.4310913						46	3	2	NaN	NaN	NaN	0.25335	1	16675	16675		27.296	1.6148	1	4117.9	+		22288	10191	12876	13246	17686	17686					0.03542416277969096
RKPNQLDGPPS	11	Unmodified						0	0	0			REV__ENSG00000160049|ENST00000377038|DFFA	REV__ENSG00000160049|ENST00000377038|DFFA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	604.822744	1207.63093	1.4095	0.00085249	-3.1028	-0.0018767	-1.6934	-0.0010242	604.8206990693483	15.27	0.048055	15.27	15.27	15.318	0	1137	31	0.9369253	0.018343449	0.9369253	379.5568		7.4310913	-0.01719	0.00044823	-0.0001574	NaN	27.296	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4117.9	+		22289	10191	12876	13246							0.03542416277969096
RKPSLLIP	8	Unmodified	_RKPSLLIP_					0	0	0		ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5;nc|ENSG00000105609|O75023-2|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.6036632538002	1	923.603663	922.596387	-0.66809	-0.00061705	2.9652	0.0027387	2.2971	0.0021216	923.6068763052475	55.747	0.14443	55.746	55.674	55.818	-0.00059128	126	64	1.544062	0.037155986	1.5425426	313.8509	0	7.552429						183	7	3	NaN	NaN	NaN	0.8439	1	6336	6336		3.1533	1.7138	1	15257			22290	1551	12877	13247	17687	17687					0.13199244927807285
RKRRMKVKK	9	Unmodified	_RKRRMKVKK_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.8099248304	1	1229.80992	1228.80265	1.4292	0.0017576	-8.3797	-0.010305	-6.9505	-0.0085478	1229.8002469108135	40.054	0.12029	40.06	40.06	40.18	0.0060463	57	94	1.5847093	0.05475068	1.5831898	320.9304	0	11.087952						348	6	4	NaN	NaN	NaN	0.66196	1	16518	16518		2.4615	0.28518	1	55927	+		22291	8710	12878	13248	17688	17688					0.19739914555270843
RKSPLDICK	9	Unmodified	_RKSPLDICK_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.3026012077501	2	530.302601	1058.59065	1.4172	0.00075153	-11.381	-0.0060353	-9.9637	-0.0052838	530.8026685228768	24.406	0.12065	24.406	24.309	24.43	0	1272	109	0.854179	0.06629366	0.854179	346.58545	0	26.898834						341	6	4	NaN	NaN	NaN	0.49999	1	11040	11040		9.6116	1.3214	1	49181	+		22292	10045	12879	13249	17689	17689					0.06369778353814581
RKSPLDICK	9	Unmodified						0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.302601	1058.59065	1.4172	0.00075153	-11.381	-0.0060353	-9.9637	-0.0052838	530.8026685228768	24.406	0.12065	24.406	24.309	24.43	0	1272	109	0.854179	0.06629366	0.854179	346.58545		26.898834	0.0065002	0.0035903	0.0035251	NaN	9.6116	341	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49181	+		22293	10045	12879	13249							0.06369778353814581
RKTIFELYI	9	Unmodified	_RKTIFELYI_					0	0	0		tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1	tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1	tr|U7T4S8|U7T4S8_FUSNUUDP-N-acetylmuramate--L-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murCPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.9008913659667	3	394.900891	1181.68084	1.0268	0.0004055	0.29594	0.00011687	1.3228	0.00052237	394.900578925503	20.525	0.096207	20.525	20.501	20.597	0	1428	37	0.7580582	0.022244275	0.7580582	460.75394	0	13.520233						83	5	2	NaN	NaN	NaN	0.44082	1	15895	15895		10.965	2.6876	1	7276.1			22294	13987	12880	13250	17690	17690					0.09727150953904129
RKYFSFPVF	9	Unmodified	_RKYFSFPVF_					0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.55008153229994	3	397.550082	1189.62842	1.9978	0.00079423	-11.895	-0.0047288	-9.8972	-0.0039346	397.54616689861444	13.661	0.096045	13.661	13.613	13.709	0	1551	25	0.6818875	0.0148973465	0.6818875	414.42496	0	9.053986						57	5	2	NaN	NaN	NaN	0.56377	1	16148	16148		6.9844	1.6997	1	3624.1			22295	2808	12881	13251	17691	17691					0.041186126109323595
RKYFSFPVF	9	Unmodified						0	0	0		nc|ENSG00000133059|Q6XUX3-3|DSTYK;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-3|DSTYK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	397.550082	1189.62842	3.6628	0.0014562	-12.703	-0.0050499	-9.0397	-0.0035937	397.54470109929576	13.877	0.047935	13.866	13.818	13.866	-0.010672	1554	19	0.68002546	0.011171758	0.678506	413.29327		6.7897644	0.1028	-0.00064225	-0.0016907	NaN	6.9844	18	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910.36			22296	2808	12881	13251							0.041186126109323595
RLAKASGK	8	Unmodified	_RLAKASGK_					0	0	0		ENST00000520834.1_1_8:65489507-65489756:-|nuORF	ENST00000520834.1_1_8:65489507-65489756:-|nuORF	ENST00000520834.1_1_8:65489507-65489756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	830.5206619059002	1	830.520662	829.513385	1.9678	0.0016343	2.8806	0.0023924	4.8484	0.0040267	830.5241428768342	56.589	0.047901	56.589	56.565	56.613	0	279	46	1.4535767	0.026686788	1.4535767	295.9456	0	5.43338						58	3	2	NaN	NaN	NaN	0.84887	1	5132	5132		0.32989	0	1	4753			22297	7396	12882	13252	17692	17692					0.09180928199805294
RLAKYFFNKE	10	Unmodified	_RLAKYFFNKE_					0	0	0		ENSG00000241945|ENST00000291576|PWP2;PWP2-TRAPPC10|1|fusion	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.36150468265	2	658.361505	1314.70846	0.69105	0.00045496	-8.7592	-0.0057667	-8.0681	-0.0053117	658.3562412194377	33.842	0.048294	33.842	33.817	33.866	0	1101	37	0.95892316	0.021986008	0.95892316	388.1107	0	8.898529						49	3	2	NaN	NaN	NaN	0.76548	1	19029	19029		3.5698	0	1	3987.8			22298	6073	12883	13253	17693	17693					0.06369054214110292
RLATLGAA	8	Unmodified	_RLATLGAA_					0	0	0			REV__ENST00000494981.1_1_14:105935406-105936549:+|nuORF	REV__ENST00000494981.1_1_14:105935406-105936549:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.4675637029001	1	772.467564	771.460287	1.4298	0.0011044	1.6556	0.0012789	3.0853	0.0023833	772.4678203193545	44.28	0.11988	44.28	44.256	44.376	0	555	40	1.2891023	0.023353815	1.2891023	262.7805	0	4.76062						93	6	2	NaN	NaN	NaN	0.84692	1	4377	4377		1.4396	0	1	7418	+		22299	12493	12884	13254	17694	17694					0.06541550417136932
RLDPTSALRL	10	Unmodified	_RLDPTSALRL_					0	0	0			REV__ENSG00000168263|ENST00000382082|KCNV2	REV__ENSG00000168263|ENST00000382082|KCNV2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.2277785464333	3	381.227779	1140.66151	1.1101	0.0004232	0.083399	3.1794E-05	1.1935	0.000455	381.22763000528886	24.381	0.12065	24.381	24.309	24.43	0	1506	64	0.70979416	0.039048076	0.70979416	431.59735	0	23.74356						135	6	2	NaN	NaN	NaN	0.60059	1	14486	14486		12.15	0.58819	1	12424	+		22300	10501	12885	13255	17695	17695					0.09680194662973918
RLDVLVLH	8	Unmodified	_RLDVLVLH_					0	0	0			REV__ENST00000556798.1_1_12:57627435-57627797:+|nuORF	REV__ENST00000556798.1_1_12:57627435-57627797:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.593826849	1	964.593827	963.58655	1.7247	0.0016636	-11.102	-0.010709	-9.3769	-0.0090449	964.5814255579547	55.869	0.047989	55.869	55.845	55.893	0	234	46	1.4802408	0.02664435	1.4802408	300.69022	0	5.412445						59	3	2	NaN	NaN	NaN	0.84727	1	7454	7454		1.2418	0	1	5441.9	+		22301	10862	12886	13256	17696	17696					0.10330056922407493
RLEGGGPV	8	Unmodified	_RLEGGGPV_					0	0	0		ENST00000589644.1_1_19:38799650-38799980:-|nuORF	ENST00000589644.1_1_19:38799650-38799980:-|nuORF	ENST00000589644.1_1_19:38799650-38799980:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.71922733160005	2	392.719227	783.423902	1.0878	0.00042719	-5.1541	-0.0020241	-4.0663	-0.0015969	392.7174602304525	27.06	0.26549	27.049	26.977	27.242	-0.010126	1398	46	0.77658504	0.027776778	0.7750656	316.51862	0	11.3211975						256	12	3	NaN	NaN	NaN	0.80071	1	4456	4456		9.1232	0	1	44384			22302	7723	12887	13257	17697	17697					0.02352673520431381
RLFFFFSFFFF	11	Unmodified	_RLFFFFSFFFF_					0	0	0			REV__ENST00000425156.5_1_3:40433060-40433240:-|nuORF	REV__ENST00000425156.5_1_3:40433060-40433240:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	776.39481618375	2	776.394816	1550.77508	2.0254	0.0015725	0.89721	0.00069659	2.9227	0.0022691	776.3962431306203	23.369	0.072275	23.369	23.345	23.417	0	942	34	1.055741	0.020038128	1.055741	426.6191	0	8.0972595						72	4	2	NaN	NaN	NaN	0.76304	1	20699	20699		3.2116	0	1	8280.7	+		22303	12126	12888	13258	17698	17698					0.021722897760128035
RLFGTTVTF	9	Unmodified	_RLFGTTVTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2900167612501	2	521.290017	1040.56548	1.7027	0.0008876	-3.475	-0.0018115	-1.7723	-0.00092388	521.2876228061486	24.96	0.1448	24.96	24.936	25.081	0	1272	52	0.854179	0.0313375	0.854179	346.6625	0	12.718109						222	7	4	NaN	NaN	NaN	0.12328	1	10242	10242		32.453	3.5572	1	79232			22304	779	12889	13259	17699	17699					0.0468204682290434
RLFGTTVTF	9	Unmodified	_RLFGTTVTF_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2900167612501	2	521.290017	1040.56548	1.5984	0.00083324	-2.7603	-0.0014389	-1.1619	-0.00060567	521.2885839172837	25.008	0.19301	24.996	24.924	25.117	-0.012011	1272	49	0.854179	0.029489279	0.8526596	346.6625	0	11.968018						275	9	4	NaN	NaN	NaN	0.16939	1	10028	10028		27.296	3.9618	1	79563			22305	779	12889	13259	17700	17700					0.0468204682290434
RLFRVGTK	8	Unmodified	_RLFRVGTK_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.8061683519501	2	488.806168	975.597784	1.918	0.00093753	-1.3784	-0.00067376	0.53964	0.00026378	488.8049910559058	16.758	0.095921	16.758	16.71	16.806	0	1548	34	0.6837494	0.020480454	0.6837494	277.73602	0	8.319061						71	5	2	NaN	NaN	NaN	0.84512	1	7778	7778		2.4615	0	1	6104	+		22306	11427	12890	13260	17701	17701					0.10900879016571707
RLFSPFWF	8	Unmodified	_RLFSPFWF_					0	0	0		ENST00000462041.1_1_1:79093600-79097167:+|nuORF	ENST00000462041.1_1_1:79093600-79097167:+|nuORF	ENST00000462041.1_1_1:79093600-79097167:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2898197960001	2	550.28982	1098.56509	1.0399	0.00057226	-7.2484	-0.0039887	-6.2085	-0.0034165	550.787187120219	32.563	0.096508	32.563	32.514	32.611	0	1197	82	0.9001988	0.049669147	0.9001988	365.08737	0	20.143982						130	5	3	NaN	NaN	NaN	0.83211	1	12790	12790		4.9097	0	1	11987			22307	7083	12891	13261	17702	17702					0.01974671893708546
RLGGPPGP	8	Unmodified	_RLGGPPGP_					0	0	0		nc|ENSG00000169696|Q9BZE9-4|ASPSCR1;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	REV__nc|ENSG00000018236|Q12860-2|CNTN1	REV__nc|ENSG00000018236|Q12860-2|CNTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.7164876774	2	375.716488	749.418422	1.9076	0.00071671	-5.2055	-0.0019558	-3.298	-0.0012391	375.714698290521	23.32	0.072367	23.307	23.283	23.355	-0.013296	1446	52	0.7469324	0.031531572	0.74541295	304.67	0	12.861572						94	4	2	NaN	NaN	NaN	0.84876	1	3967	3967		0.39566	0	1	38342			22308	8423	12892	13262	17703	17703					0.033689947286120514
RLGIEEEL	8	Unmodified	_RLGIEEEL_					0	0	0			REV__ENST00000286800.7_1_21:30715829-30715970:+|nuORF	REV__ENST00000286800.7_1_21:30715829-30715970:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.7638318005	2	479.763832	957.513111	1.7112	0.00082095	4.0833	0.001959	5.7944	0.00278	479.7667426734662	56.205	0.11988	56.205	56.133	56.253	0	1362	37	0.79879075	0.022191346	0.79879075	324.55045	0	9.016357						103	6	3	NaN	NaN	NaN	0.8439	1	7280	7280		3.1533	0	1	6021.5	+		22309	11619	12893	13263	17704	17704					0.032654636892857525
RLGIEEEL	8	Unmodified						0	0	0			REV__ENST00000286800.7_1_21:30715829-30715970:+|nuORF	REV__ENST00000286800.7_1_21:30715829-30715970:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	479.763832	957.513111	1.7112	0.00082095	4.0833	0.001959	5.7944	0.00278	479.7667426734662	56.205	0.11988	56.205	56.133	56.253	0	1362	37	0.79879075	0.022191346	0.79879075	324.55045		9.016357	0	0	0	NaN	3.1533	103	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6021.5	+		22310	11619	12893	13263							0.032654636892857525
RLGQDDPTPS	10	Unmodified	_RLGQDDPTPS_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2647272575	2	543.264727	1084.5149	1.2794	0.00069503	-3.7977	-0.0020632	-2.5183	-0.0013681	543.2629756017728	34.275	0.096428	34.274	34.225	34.322	-0.0012474	1266	70	0.85786515	0.042388618	0.8563457	347.9742	0	17.194						110	5	2	NaN	NaN	NaN	0.71559	1	11843	11843		6.9844	0.19036	1	8883.5			22311	1908	12894	13264	17705	17705					-0.0239752729276006
RLGQDDPTPS	10	Unmodified						0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.264727	1084.5149	1.2568	0.00068276	-5.2322	-0.0028425	-3.9754	-0.0021597	543.7630136967092	34.276	0.072433	34.276	34.252	34.324	0	1266	55	0.85786515	0.033168256	0.85786515	347.9742		13.45401	0.001175	-0.00072074	0.00075972	NaN	6.9844	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5544.3			22312	1908	12894	13264							-0.0239752729276006
RLGTEGGA	8	Unmodified	_RLGTEGGA_					0	0	0			REV__nc|ENSG00000107562|P48061-7|CXCL12	REV__nc|ENSG00000107562|P48061-7|CXCL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.70103457845005	2	380.701035	759.387516	1.5503	0.00059019	1.8061	0.00068757	3.3563	0.0012778	380.7016623291945	27.905	0.096537	27.905	27.881	27.977	0	1458	88	0.7395112	0.053783298	0.7395112	301.57193	0	21.93277						111	5	2	NaN	NaN	NaN	0.84756	1	4208	4208		1.072	0	1	11758	+		22313	13104	12895	13265	17706	17706					-0.0018020337627149274
RLKKHRKHYR	10	Unmodified	_RLKKHRKHYR_					0	0	0		ENST00000490931.1_1_1:11171595-11175545:-|nuORF	ENST00000490931.1_1_1:11171595-11175545:-|nuORF	ENST00000490931.1_1_1:11171595-11175545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4392780002001	2	711.439278	1420.864	1.3255	0.00094304	-1.0393	-0.00073937	0.28628	0.00020367	711.9394612644098	19.13	0.096148	19.116	19.044	19.14	-0.014141	1278	43	0.85049206	0.025808692	0.8489726	343.9571	0	10.437592						172	5	4	NaN	NaN	NaN	0.78213	1	19266	19266		0	0	1	14248			22314	7266	12896	13266	17707	17707					0.17040562578927165
RLKPAKVL	8	Unmodified	_RLKPAKVL_					0	0	0		nc|ENSG00000114439|Q8WY36-3|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.6352977332	1	924.635298	923.628021	2.0718	0.0019156	-6.4678	-0.0059803	-4.396	-0.0040647	924.6290719387434	55.725	0.072319	55.725	55.677	55.749	0	279	40	1.4535767	0.023123741	1.4535767	295.45377	0	4.7001038						54	4	2	NaN	NaN	NaN	0.84887	1	6487	6487		0.32989	0	1	2943.2			22315	7931	12897	13267	17708	17708					0.16315237681737926
RLKTANRIDL	10	Unmodified	_RLKTANRIDL_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.5788112807666	3	400.578811	1198.7146	1.47	0.00058885	0.47797	0.00019146	1.948	0.00078031	400.5789654219685	39.018	0.07238	39.023	39.023	39.095	0.0046806	1434	46	0.75435036	0.027809858	0.7528309	458.42523	0	16.9003						89	4	3	NaN	NaN	NaN	0.77649	1	15786	15786		1.3696	0	1	6248	+		22316	9579	12898	13268	17709	17709					0.12319572445630911
RLKTANRIDL	10	Unmodified						0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	400.578811	1198.7146	0.33557	0.00013442	2.4612	0.0009859	2.7968	0.0011203	400.5800198529019	39.044	0.048088	39.044	39.02	39.068	0	1428	43	0.7580582	0.025954425	0.7580582	460.67847		15.772766	0.01076	0.00062366	0.0026136	NaN	1.3696	66	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5965	+		22317	9579	12898	13268							0.12319572445630911
RLKTANRIDL	10	Unmodified						0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	400.578811	1198.7146	1.47	0.00058885	0.47797	0.00019146	1.948	0.00078031	400.5789654219685	39.018	0.07238	39.023	39.023	39.095	0.0046806	1434	46	0.75435036	0.027809858	0.7528309	458.42523		16.9003	-0.01076	-0.0017596	-0.0026136	NaN	1.3696	89	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6248	+		22318	9579	12898	13268							0.12319572445630911
RLLATHGP	8	Unmodified	_RLLATHGP_					0	0	0			REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.75614415415	2	432.756144	863.497735	1.4629	0.00063308	-8.6447	-0.003741	-7.1818	-0.0031079	432.7521383610705	56.589	0.047901	56.589	56.565	56.613	0	1323	25	0.8228144	0.014773428	0.8228144	334.82605	0	6.011688						41	3	2	NaN	NaN	NaN	0.8439	1	5578	5578		3.1533	0	1	3869.3	+		22319	12910	12899	13269	17710	17710					0.060526416827428875
RLLATHGP	8	Unmodified						0	0	0			REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	432.756144	863.497735	1.4629	0.00063308	-8.6447	-0.003741	-7.1818	-0.0031079	432.7521383610705	56.589	0.047901	56.589	56.565	56.613	0	1323	25	0.8228144	0.014773428	0.8228144	334.82605		6.011688	0.0012363	-0.001436	-0.00016357	NaN	3.1533	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3869.3	+		22320	12910	12899	13269							0.060526416827428875
RLLATHGP	8	Unmodified						0	0	0			REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	REV__ENST00000590137.1_1_17:74149248-74149356:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.756144	863.497735	-0.18002	-7.7907E-05	-4.6881	-0.0020288	-4.8682	-0.0021067	432.75447138038885	56.587	0.047947	56.586	56.562	56.61	-0.00056458	1320	25	0.824661	0.0147717595	0.8231416	335.57745		6.0110474	-0.0012363	0.0019884	0.00016357	NaN	3.1533	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3992	+		22321	12910	12899	13269							0.060526416827428875
RLLDTTITF	9	Unmodified	_RLLDTTITF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.30840647965	2	540.308406	1078.60226	1.5976	0.00086318	-4.685	-0.0025313	-3.0874	-0.0016681	540.3054438394919	26.311	0.12062	26.3	26.252	26.373	-0.011135	1212	82	0.8910048	0.049706757	0.88948536	361.44144	0	20.163849						151	6	2	NaN	NaN	NaN	0.12866	1	11621	11621		31.675	7.1134	1	13871			22322	2532	12900	13270	17711	17711					0.06610298648797652
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.3238595786	2	505.32386	1008.63317	1.1282	0.00057008	-1.5283	-0.00077231	-0.40018	-0.00020222	505.32336542429084	29.521	0.12065	29.514	29.466	29.586	-0.0070648	1245	34	0.87076044	0.020257473	0.869241	353.53802	0	8.224762						103	6	3	NaN	NaN	NaN	0.13602	1	8763	8763		30.61	4.4952	1	7411			22323	5283	12901	13271	17712	17712					0.12919496753693238
RLLDYHECTV	10	Unmodified	_RLLDYHECTV_					0	0	0		nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.8057050026999	2	624.805705	1247.59686	1.3705	0.00085631	-5.8066	-0.003628	-4.4361	-0.0027717	625.3048254717938	27.543	0.096582	27.543	27.495	27.591	0	1146	61	0.93142134	0.036702693	0.93142134	377.19052	0	14.86322						169	5	4	NaN	NaN	NaN	0.76892	1	17712	17712		3.2116	0.32214	1	10745			22324	4704	12902	13272	17713	17713					-0.017037482053410713
RLLEIALGF	9	Unmodified	_RLLEIALGF_					0	0	0		ENSG00000166147|ENST00000316623|FBN1;ENST00000558230.1_1_15:48935234-48936966:-|nuORF	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.3160345465001	2	516.316035	1030.61752	1.9546	0.0010092	-1.9205	-0.00099157	0.034168	1.7642E-05	516.3149199185735	30.222	0.096498	30.222	30.198	30.294	0	1236	37	0.876284	0.02208829	0.876284	355.6785	0	8.965515						71	5	2	NaN	NaN	NaN	0.31471	1	9822	9822		17.97	4.2326	1	6345.5			22325	4452	12903	13273	17714	17714					0.10343210236646883
RLLEIALGF	9	Unmodified						0	0	0		ENSG00000166147|ENST00000316623|FBN1;ENST00000558230.1_1_15:48935234-48936966:-|nuORF	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.316035	1030.61752	1.5705	0.00081086	0.36058	0.00018617	1.931	0.00099703	516.3159139806916	30.414	0.048283	30.407	30.383	30.431	-0.0064106	1233	37	0.87812483	0.022090733	0.8766054	356.42563		8.966492	0.092812	0.0016467	0.00016068	NaN	17.97	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3350.7			22326	4452	12903	13273							0.10343210236646883
RLLLFNLRH	9	Unmodified	_RLLLFNLRH_					0	0	0			REV__VPS13D|p.L1175F|1|0.21|ENSG00000048707|chr1:12277113-12277113|A/T|missense_variant	REV__VPS13D|p.L1175F|1|0.21|ENSG00000048707|chr1:12277113-12277113|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.5803750965666	3	394.580375	1180.7193	1.5009	0.00059222	-3.6475	-0.0014392	-2.1466	-0.00084702	394.57816129512634	21.802	0.096283	21.802	21.754	21.85	0	1467	58	0.7339432	0.03525263	0.7339432	446.10086	0	21.427032						73	5	3	NaN	NaN	NaN	0.66035	1	15859	15859		2.5994	0	1	4891.2	+		22327	13647	12904	13274	17715	17715					0.1361650137905599
RLLLLGSG	8	Unmodified	_RLLLLGSG_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.5301639597002	1	828.530164	827.522887	-0.45677	-0.00037845	2.8772	0.0023838	2.4204	0.0020054	828.532393057452	56.179	0.28798	56.178	56.034	56.322	-0.00056458	390	52	1.3876231	0.030361176	1.3861036	282.5286	0	6.1817017						257	13	2	NaN	NaN	NaN	0.84727	1	4998	4998		1.2418	0	1	29587			22328	1571	12905	13275	17716	17716					0.10222696485334382
RLLLLGSG	8	Unmodified						0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	828.530164	827.522887	1.9566	0.0016211	0.75277	0.00062369	2.7093	0.0022448	828.5308239657974	56.157	0.2399	56.157	56.061	56.301	0	393	52	1.3858368	0.030364394	1.3858368	282.16495		6.1823425	-0.010674	-0.00092127	-0.00013335	NaN	1.2418	245	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27202			22329	1571	12905	13275							0.10222696485334382
RLLVHQRMHT	10	Unmodified	_RLLVHQRMHT_					0	0	0		nc|ENSG00000090612|Q14587-2|ZNF268;ENST00000536899.6_1_12:133758152-133781113:+|nuORF;ENSG00000090612|ENST00000536435|ZNF268	nc|ENSG00000090612|Q14587-2|ZNF268	nc|ENSG00000090612|Q14587-2|ZNF268	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8642229346001	2	645.864223	1289.71389	1.5241	0.00098433	-6.7759	-0.0043763	-5.2518	-0.003392	645.8622579973129	39.668	0.16881	39.673	39.673	39.842	0.0053368	1194	109	0.902037	0.06624347	0.9005176	365.16037	0	26.816528						430	8	5	NaN	NaN	NaN	0.76548	1	17769	17769		3.5698	1.6451	1	40398			22330	1060	12906	13276	17717	17717					0.08062454524952045
RLMSAVDSRKY	11	Oxidation (M)	_RLM(Oxidation (M))SAVDSRKY_		RLM(1)SAVDSRKY		RLM(50)SAVDSRKY	0	0	1		ENST00000394366.6_2_14:70234020-70234861:+|nuORF	ENST00000394366.6_2_14:70234020-70234861:+|nuORF	ENST00000394366.6_2_14:70234020-70234861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.9029661542666	3	447.902966	1340.68707	1.0373	0.00046462	-3.1194	-0.0013972	-2.082	-0.00093255	447.9014166445026	12.124	0.12006	12.124	12.076	12.196	0	1401	37	0.77473325	0.022222579	0.77473325	470.24518	0	13.488586						164	6	4	NaN	NaN	NaN	0.04842	1	19423	19423		50.238	40.653	1	28835			22331	6775	12907	13277	17718	17718		632			0.030353011230999982
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.8118446256001	2	589.811845	1177.60914	1.3859	0.00081739	-4.9036	-0.0028922	-3.5178	-0.0020748	589.8099555876202	14.813	0.1201	14.813	14.813	14.933	0	1188	40	0.90571284	0.023891509	0.90571284	367.01804	0	9.6814575						84	6	2	NaN	NaN	NaN	0.13999	1	15751	15751		30.035	8.2004	1	7246.2			22332	545	12908	13278	17719	17719					0.027436115293767216
RLPAGGKA	8	Unmodified	_RLPAGGKA_					0	0	0		ENST00000539246.5_1_11:61286101-61314074:-|nuORF;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7	ENST00000539246.5_1_11:61286101-61314074:-|nuORF	ENST00000539246.5_1_11:61286101-61314074:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.4678980539002	1	769.467898	768.460622	1.7494	0.0013461	4.1128	0.0031646	5.8621	0.0045107	769.4714210031148	58.053	0.096066	58.053	58.029	58.125	0	501	73	1.3214091	0.043020606	1.3214091	269.38452	0	8.770233						104	5	2	NaN	NaN	NaN	0.84887	1	4342	4342		0.32989	0	1	12477			22333	407	12909	13279	17720	17720					0.0671297013699359
RLPAWQPLL	9	Unmodified	_RLPAWQPLL_					0	0	0		ENSG00000182107|ENST00000555868|TMEM30B	ENSG00000182107|ENST00000555868|TMEM30B	ENSG00000182107|ENST00000555868|TMEM30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3294762727501	2	547.329476	1092.6444	1.0691	0.00058518	-3.953	-0.0021636	-2.8839	-0.0015784	547.8275439102376	27.542	0.16892	27.533	27.46	27.629	-0.0095501	1221	58	0.885486	0.034952402	0.88396657	359.14447	0	14.176361						165	8	3	NaN	NaN	NaN	0.36492	1	12205	12205		15.175	0	1	21543			22334	5249	12910	13280	17721	17721					0.10178318847852097
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.79873725035	2	615.798737	1229.58292	1.5105	0.00093018	-8.8362	-0.0054413	-7.3257	-0.0045112	615.7958171527714	25.926	0.072403	25.926	25.901	25.974	0	1194	100	0.902037	0.060628116	0.902037	365.34955	0	24.55606						164	4	2	NaN	NaN	NaN	0.13999	1	17248	17248		30.035	2.7392	1	29164			22335	1590	12911	13281	17722	17722					-0.022686576421165228
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.79873725035	2	615.798737	1229.58292	1.4608	0.00089956	-1.7179	-0.0010579	-0.25707	-0.0001583	615.7976323491837	24.478	0.43418	24.478	24.406	24.84	0	1200	127	0.89836043	0.07712567	0.89836043	363.86038	0	31.238007						1088	19	4	NaN	NaN	NaN	0.0040343	1	17251	17251		104.89	49.477	1	1156400			22336	1590	12911	13281	17723	17723					-0.022686576421165228
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.79873725035	2	615.798737	1229.58292	1.0615	0.00065367	-1.6449	-0.0010129	-0.58336	-0.00035923	615.7987358470726	24.96	0.048279	24.948	24.948	24.996	-0.012394	1188	46	0.90571284	0.027564168	0.9041934	366.83832	0	11.164246						70	3	2	NaN	NaN	NaN	0.27507	1	16535	16535		20.513	5.0506	1	9888.7			22337	1590	12911	13281	17724	17724					-0.022686576421165228
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.79873725035	2	615.798737	1229.58292	1.5962	0.00098295	-1.8024	-0.0011099	-0.2062	-0.00012698	615.7973410616597	25.925	0.12067	25.914	25.817	25.938	-0.0116	1194	100	0.902037	0.060608506	0.9005176	365.34952	0	24.548096						169	6	2	NaN	NaN	NaN	0.045904	1	16536	16536		48.65	11.348	1	30987			22338	1590	12911	13281	17725	17725					-0.022686576421165228
RLPEEWSQW	9	Unmodified	_RLPEEWSQW_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.79873725035	2	615.798737	1229.58292	1.6473	0.0010144	-0.88241	-0.00054338	0.76486	0.000471	615.7982239886084	24.502	0.48246	24.489	24.417	24.899	-0.012747	1200	124	0.89836043	0.0753178	0.896841	363.86038	0	30.505737						1199	21	4	NaN	NaN	NaN	8.9076E-05	1	16537	16537		123.58	70.953	1	1072800			22339	1590	12911	13281	17726	17726					-0.022686576421165228
RLPEPLPSW	9	Unmodified	_RLPEPLPSW_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.803291312	2	547.803291	1093.59203	1.8448	0.0010106	-1.4738	-0.00080736	0.37096	0.00020321	547.8025705793839	25.515	0.24126	25.515	25.443	25.684	0	1269	79	0.8560222	0.047899425	0.8560222	347.1905	0	19.427307						252	11	4	NaN	NaN	NaN	0.032826	1	12571	12571		55.413	18.827	1	60090			22340	3206	12912	13282	17727	17727					0.04897735714234841
RLPEPLPSW	9	Unmodified	_RLPEPLPSW_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.803291312	2	547.803291	1093.59203	1.9051	0.0010436	-2.1495	-0.0011775	-0.24442	-0.00013389	547.8028588894397	25.539	0.072395	25.528	25.455	25.528	-0.0116	1269	82	0.8560222	0.049739003	0.85450274	347.1905	0	20.173431						162	4	3	NaN	NaN	NaN	0.024221	1	12244	12244		66.656	32.218	1	51268			22341	3206	12912	13282	17728	17728					0.04897735714234841
RLPESFPEL	9	Unmodified	_RLPESFPEL_					0	0	0		ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	ENSG00000137269|ENST00000370888|LRRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2927564154501	2	544.292756	1086.57096	1.5924	0.00086674	-5.0288	-0.0027371	-3.4363	-0.0018704	544.2902348877038	24.936	0.21713	24.924	24.827	25.044	-0.012392	1260	67	0.8615505	0.040530264	0.8600311	349.46082	0	16.43985						408	10	3	NaN	NaN	NaN	0.31471	1	11934	11934		17.97	6.4212	1	102020			22342	3079	12913	13283	17729	17729					0.031137256147076187
RLPGALWG	8	Unmodified	_RLPGALWG_					0	0	0			REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.25323732444997	2	435.253237	868.491922	1.3508	0.00058794	-6.9324	-0.0030174	-5.5816	-0.0024294	435.2500915381465	28.001	0.072378	28.001	28.001	28.074	0	1335	91	0.8154261	0.055418193	0.8154261	331.78967	0	22.549194						122	4	2	NaN	NaN	NaN	0.84207	1	5646	5646		3.5732	0	1	8434.6	+		22343	12263	12914	13284	17730	17730					0.05241543171075591
RLPGALWG	8	Unmodified						0	0	0			REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	435.253237	868.491922	1.3508	0.00058794	-6.9324	-0.0030174	-5.5816	-0.0024294	435.2500915381465	28.001	0.072378	28.001	28.001	28.074	0	1335	91	0.8154261	0.055418193	0.8154261	331.78967		22.549194	0.12583	-0.00049942	0.0026074	NaN	3.5732	122	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8434.6	+		22344	12263	12914	13284							0.05241543171075591
RLPGALWG	8	Unmodified						0	0	0			REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	REV__ENST00000478477.1_1_7:150774852-150776634:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	435.253237	868.491922	0.84846	0.00036929	-5.7979	-0.0025236	-4.9494	-0.0021543	435.2505970656143	27.759	0.048246	27.75	27.726	27.774	-0.009552	1341	94	0.8117308	0.05731201	0.81021136	330.28607		23.319763	-0.12583	0.00048821	-0.0026074	NaN	3.5732	110	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10615	+		22345	12263	12914	13284							0.05241543171075591
RLPGLPQP	8	Unmodified	_RLPGLPQP_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;nc|ENSG00000110786|P54829-2|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.2663446997	2	439.266345	876.518136	1.6893	0.00074206	-11.046	-0.004852	-9.3564	-0.0041099	439.26084088061594	26.263	0.072346	26.252	26.228	26.3	-0.011137	1338	34	0.81357855	0.020325482	0.8120591	330.99078	0	8.269104						64	4	2	NaN	NaN	NaN	0.84455	1	5635	5635		2.7852	0	1	6433.3			22346	1778	12915	13285	17731	17731					0.07493812342568162
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8844186729501	2	570.884419	1139.75428	1.6554	0.00094503	-0.99082	-0.00056564	0.66456	0.00037939	570.8836779988686	29.522	0.28964	29.522	29.425	29.715	0	1164	49	0.9204082	0.029384315	0.9204082	373.11633	0	11.911865						390	13	4	NaN	NaN	NaN	0.12945	1	14445	14445		31.561	16.386	1	64252			22347	1149	12916	13286	17732	17732					0.1899974418702186
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8844186729501	2	570.884419	1139.75428	0.86805	0.00049556	-0.91646	-0.0005232	-0.048414	-2.7639E-05	570.8838437298175	31.138	0.28961	31.133	30.964	31.253	-0.0050716	1161	46	0.9222442	0.027543366	0.92072475	373.86063	0	11.165558						259	13	3	NaN	NaN	NaN	0.47587	1	13977	13977		10.605	1.643	1	40214			22348	1149	12916	13286	17733	17733					0.1899974418702186
RLPLSLVP	8	Unmodified	_RLPLSLVP_					0	0	0			REV__ENST00000219235.4_1_16:57399964-57400084:+|nuORF	REV__ENST00000219235.4_1_16:57399964-57400084:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.5771141523	1	894.577114	893.569838	1.8286	0.0016358	-7.4335	-0.0066498	-5.6049	-0.005014	894.5701274129145	57.069	0.024044	57.069	57.069	57.093	0	207	46	1.496219	0.026616096	1.496219	304.27145	0	5.4126587						68	2	3	NaN	NaN	NaN	0.84692	1	5981	5981		1.4396	0	1	7615.3	+		22349	11464	12917	13287	17734	17734					0.11879556036456052
RLPLSLVP	8	Unmodified						0	0	0			REV__ENST00000219235.4_1_16:57399964-57400084:+|nuORF	REV__ENST00000219235.4_1_16:57399964-57400084:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	894.577114	893.569838	1.8286	0.0016358	-7.4335	-0.0066498	-5.6049	-0.005014	894.5701274129145	57.069	0.024044	57.069	57.069	57.093	0	207	46	1.496219	0.026616096	1.496219	304.27145		5.4126587	0.0012064	-0.00078748	-0.0010146	NaN	1.4396	68	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7615.3	+		22350	11464	12917	13287							0.11879556036456052
RLPPECMY	8	Unmodified	_RLPPECMY_					0	0	0		nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-5|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.73570552524995	2	504.735706	1007.45686	1.2007	0.00060603	-0.24442	-0.00012337	0.95627	0.00048266	505.23605611411256	28.025	0.09651	28.016	28.016	28.112	-0.0089779	1332	49	0.8172735	0.029553175	0.81575406	331.82693	0	11.999084						68	5	2	NaN	NaN	NaN	0.83211	1	8696	8696		4.9097	0	1	6211.8			22351	7899	12918	13288	17735	17735					-0.04657203743397531
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.29275641545	2	580.292756	1158.57096	2.5802	0.0014973	-1.9648	-0.0011401	0.61547	0.00035715	580.2920130548222	25.684	0.16891	25.684	25.636	25.805	0	1176	88	0.9130621	0.053302348	0.9130621	370.06653	0	21.603546						527	8	5	NaN	NaN	NaN	0.030696	1	15097	15097		58.2	29.304	1	240940			22352	6129	12919	13289	17736	17736					-0.001982743853204738
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.29275641545	2	580.292756	1158.57096	2.4798	0.001439	-0.6671	-0.00038712	1.8127	0.0010519	580.2925164662678	25.708	0.24127	25.696	25.6	25.841	-0.0116	1179	85	0.9112251	0.051455915	0.90970564	369.32196	0	20.855225						535	11	5	NaN	NaN	NaN	0.017076	1	14596	14596		75.698	43.246	1	258400			22353	6129	12919	13289	17737	17737					-0.001982743853204738
RLQLTWLENGN	11	Unmodified	_RLQLTWLENGN_					0	0	0		ENST00000448467.1_1_22:30939341-30940067:+|nuORF;nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.356950621	2	672.356951	1342.69935	0.77706	0.00052246	-4.855	-0.0032643	-4.078	-0.0027419	672.3530156882189	41.305	0.16844	41.305	41.233	41.401	0	1218	64	0.8873258	0.03861904	0.8873258	359.05475	0	15.627136						188	8	2	NaN	NaN	NaN	0.73057	1	19460	19460		5.4499	0.26105	1	18920			22354	5751	12920	13290	17738	17738					0.041706608577896986
RLQLTWLENGN	11	Unmodified	_RLQLTWLENGN_					0	0	0		ENST00000448467.1_1_22:30939341-30940067:+|nuORF;nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.356950621	2	672.356951	1342.69935	1.0118	0.00068027	-7.163	-0.0048161	-6.1513	-0.0041358	672.853811354325	41.689	0.55261	41.697	41.553	42.105	0.0082588	1191	82	0.90387505	0.049631655	0.9023556	365.75137	0	20.083344						1569	24	6	NaN	NaN	NaN	0.76276	1	18587	18587		3.261	0.049387	1	341330			22355	5751	12920	13290	17739	17739					0.041706608577896986
RLRCIRSTQ	9	Unmodified	_RLRCIRSTQ_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.21710800146667	3	378.217108	1131.62949	2.573	0.00097316	-2.2408	-0.0008475	0.33223	0.00012566	378.21602491373784	16.251	0.071901	16.238	16.214	16.286	-0.012995	1431	40	0.75620437	0.024104536	0.7546849	459.8613	0	14.658386						64	4	2	NaN	NaN	NaN	0.66822	1	13711	13711		0.9188	0.28708	1	4232.1			22356	3675	12921	13291	17740	17740					0.06894503708190314
RLRCIRSTQ	9	Unmodified						0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	378.217108	1131.62949	1.9741	0.00074666	-0.68156	-0.00025778	1.2926	0.00048888	378.5506399041649	16.422	0.095871	16.422	16.398	16.494	0	1452	28	0.74322224	0.016696751	0.74322224	451.9666		10.1536255	0.09194	0.00094663	-0.0057314	NaN	0.9188	38	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278.4			22357	3675	12921	13291							0.06894503708190314
RLSDAACLEAA	11	Unmodified	_RLSDAACLEAA_					0	0	0		ENST00000317216.2_1_8:22550456-22550672:-|nuORF	ENST00000317216.2_1_8:22550456-22550672:-|nuORF	ENST00000317216.2_1_8:22550456-22550672:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.27678038775	2	560.27678	1118.53901	1.4936	0.00083685	3.1518	0.0017659	4.6454	0.0026027	560.2784180140889	15.029	0.1922	15.029	14.933	15.126	0	1263	67	0.85970795	0.04051274	0.85970795	348.5886	0	16.426819						241	9	2	NaN	NaN	NaN	0.62211	1	13615	13615		12.57	1.3994	1	25394			22358	6469	12922	13292	17741	17741					-0.015520101307402001
RLSEQNEEEL	10	Unmodified	_RLSEQNEEEL_					0	0	0			REV__NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	REV__NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.79913118085	2	623.799131	1245.58371	1.7683	0.0011031	-5.5085	-0.0034362	-3.7402	-0.0023331	623.7962124015093	22.863	0.072412	22.863	22.838	22.911	0	1176	64	0.9130621	0.03856069	0.9130621	369.76224	0	15.615906						111	4	2	NaN	NaN	NaN	0.73114	1	17650	17650		5.9198	1.1907	1	15789	+		22359	9543	12923	13293	17742	17742					-0.029259077836968572
RLSRAPPL	8	Unmodified	_RLSRAPPL_					0	0	0			REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.5628610716	1	909.562861	908.555585	1.9481	0.001772	6.7179	0.0061104	8.6661	0.0078824	909.5702252755069	55.701	0.096409	55.701	55.677	55.773	0	210	55	1.4944444	0.031944394	1.4944444	303.83447	0	6.494568						117	5	2	NaN	NaN	NaN	0.82797	1	6212	6212		5.4659	0	1	10464	+		22360	12403	12924	13294	17743	17743					0.09764903608163422
RLVDVAFP	8	Unmodified	_RLVDVAFP_					0	0	0		ENST00000372179.7_1_9:135042013-135042139:+|nuORF	ENST00000372179.7_1_9:135042013-135042139:+|nuORF	ENST00000372179.7_1_9:135042013-135042139:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.5250785818	1	916.525079	915.517802	2.1913	0.0020084	-1.049	-0.00096147	1.1423	0.0010469	916.5238795224484	26.046	0.096546	26.035	26.011	26.107	-0.011135	243	55	1.4749115	0.031985164	1.473392	299.82922	0	6.502136						108	5	2	NaN	NaN	NaN	0.72043	1	6218	6218		17.78	1.3637	1	14739			22361	6662	12925	13295	17744	17744					0.05666392622697458
RLWRQLPKR	9	Unmodified	_RLWRQLPKR_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1252.7749195325998	1	1252.77492	1251.76764	1.1083	0.0013885	7.2734	0.0091119	8.3817	0.0105	1252.7848195205174	41.568	0.096172	41.577	41.553	41.649	0.0082588	69	67	1.5776473	0.038853288	1.5761279	319.43494	0	7.866852						178	5	2	NaN	NaN	NaN	0.68801	1	17061	17061		0.23014	0.037651	1	46139	+		22362	11361	12926	13296	17745	17745					0.1518299501894944
RLYGDLEAI	9	Unmodified	_RLYGDLEAI_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2849313833501	2	525.284931	1048.55531	1.3039	0.00068493	-0.89665	-0.000471	0.40728	0.00021394	525.2844156566005	21.079	0.19272	21.079	21.055	21.248	0	1269	64	0.8560222	0.038694263	0.8560222	347.37598	0	15.70224						251	9	3	NaN	NaN	NaN	0.036546	1	10575	10575		52.624	0	1	56646			22363	1967	12927	13297	17746	17746					0.03297439097673305
RLYNRKKE	8	Unmodified	_RLYNRKKE_					0	0	0			REV__OTX1|p.L354Ffs*98|1|0.28|ENSG00000115507|chr2:63056310-63056311|-/T|frameshift_variant	REV__OTX1|p.L354Ffs*98|1|0.28|ENSG00000115507|chr2:63056310-63056311|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8250893866001	2	553.825089	1105.63563	1.2893	0.00071402	6.2761	0.0034759	7.5654	0.0041899	553.8284892236223	30.896	0.2655	30.891	30.794	31.06	-0.0057545	1185	157	0.90755045	0.09540659	0.906031	368.03967	0	38.690308						642	12	2	NaN	NaN	NaN	0.84824	1	12742	12742		0.27539	0	1	108960	+		22364	13287	12928	13298	17747	17747					0.08703345211370106
RLYSDNVA	8	Unmodified	_RLYSDNVA_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.4737712928	1	937.473771	936.466495	1.6157	0.0015146	3.8822	0.0036394	5.4979	0.0051541	937.475236694633	55.1	0.072285	55.1	55.076	55.148	0	258	55	1.4660252	0.03200209	1.4660252	297.924	0	6.5034485						82	4	2	NaN	NaN	NaN	0.83582	1	6756	6756		4.4131	0	1	6899.5	+		22365	10892	12929	13299	17748	17748					-0.004279761419979877
RMCHSDFLWG	10	Unmodified	_RMCHSDFLWG_					0	0	0		ENST00000490062.1_1_2:128050061-128051699:-|nuORF	ENST00000490062.1_1_2:128050061-128051699:-|nuORF	ENST00000490062.1_1_2:128050061-128051699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.2735178048	2	626.273518	1250.53248	1.9233	0.0012045	-9.7655	-0.0061159	-7.8422	-0.0049114	626.2670276407107	13.997	0.096047	13.997	13.949	14.045	0	1224	37	0.883646	0.02208358	0.883646	357.83414	0	8.94278						91	5	2	NaN	NaN	NaN	0.61246	1	17777	17777		14.042	3.0765	1	7033.3			22366	7260	12930	13300	17749	17749					-0.08276226563111777
RMCYSTPSWV	10	Unmodified	_RMCYSTPSWV_					0	0	0		ENST00000562140.2_1_16:70398455-70404584:+|nuORF	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.51957625069997	3	410.519576	1228.5369	1.583	0.00064984	-8.9435	-0.0036715	-7.3605	-0.0030216	410.5165571680122	15.678	0.096066	15.678	15.63	15.726	0	1458	25	0.7395112	0.01484561	0.7395112	449.28342	0	9.019318						59	5	3	NaN	NaN	NaN	0.77421	1	17198	17198		0.71611	0.15914	1	3551.3			22367	7602	12931	13301	17750	17750					-0.06822762140200211
RMEVAMHYV	9	Unmodified	_RMEVAMHYV_					0	0	0			REV__ENSG00000112983|ENST00000254900|BRD8	REV__ENSG00000112983|ENST00000254900|BRD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.1844164812333	3	379.184416	1134.53142	1.6403	0.00062198	4.6683	0.0017701	6.3086	0.0023921	379.5194732251361	16.11	0.11996	16.11	16.086	16.206	0	1407	34	0.77102906	0.020376205	0.77102906	468.86203	0	12.390747						81	6	2	NaN	NaN	NaN	0.62619	1	14257	14257		2.3381	0.63966	1	7444.5	+		22368	9135	12932	13302	17751	17751					-0.030464409320302366
RMEVAMHYV	9	Unmodified						0	0	0			REV__ENSG00000112983|ENST00000254900|BRD8	REV__ENSG00000112983|ENST00000254900|BRD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	379.184416	1134.53142	1.6403	0.00062198	4.6683	0.0017701	6.3086	0.0023921	379.5194732251361	16.11	0.11996	16.11	16.086	16.206	0	1407	34	0.77102906	0.020376205	0.77102906	468.86203		12.390747	-0.052045	-0.00046903	0.00075972	NaN	2.3381	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7444.5	+		22369	9135	12932	13302							-0.030464409320302366
RMEVAMHYV	9	Unmodified						0	0	0			REV__ENSG00000112983|ENST00000254900|BRD8	REV__ENSG00000112983|ENST00000254900|BRD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	379.184416	1134.53142	2.3089	0.00087551	5.4772	0.0020769	7.7862	0.0029524	379.1875834629566	16.227	0.11989	16.214	16.142	16.262	-0.012995	1407	31	0.77102906	0.018522859	0.7695096	468.862		11.263702	0.052045	0.00045118	-0.00075972	NaN	2.3381	96	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6892.2	+		22370	9135	12932	13302							-0.030464409320302366
RMGDFEEIN	9	Unmodified	_RMGDFEEIN_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENST00000483032.1_1_1:155726967-155727102:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.83432933740005	3	370.834329	1109.48116	1.2502	0.0004636	-6.9465	-0.002576	-5.6963	-0.0021124	370.83216349508416	34.106	0.19312	34.105	34.056	34.249	-0.0012474	1491	64	0.7190863	0.039005756	0.71756685	437.39404	0	23.725769						303	9	4	NaN	NaN	NaN	0.41766	1	12873	12873		8.2775	0	1	52478			22371	2089	12933	13303	17752	17752					-0.06920272056163412
RMGLGHGPDP	10	Unmodified	_RMGLGHGPDP_					0	0	0		ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	ENST00000415279.1_1_1:106434930-106435587:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7532755017002	2	518.753276	1035.492	1.5844	0.00082189	6.0974	0.003163	7.6817	0.0039849	518.7580311168304	13.925	0.095885	13.914	13.866	13.962	-0.010673	1308	46	0.83204526	0.027680635	0.8305259	337.70126	0	11.234711						89	5	2	NaN	NaN	NaN	0.76548	1	9801	9801		3.5698	0	1	6312.2			22372	6879	12934	13304	17753	17753					-0.024328248912070194
RMHHVVAAA	9	Unmodified	_RMHHVVAAA_					0	0	0			REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5254297078001	1	991.52543	990.518153	1.5372	0.0015242	-0.74137	-0.00073508	0.79585	0.00078911	991.5251795733022	27.88	0.048311	27.87	27.846	27.895	-0.009552	255	64	1.4678029	0.037329912	1.4662834	298.0493	0	7.580139						100	3	3	NaN	NaN	NaN	0.67818	1	8064	8064		1.072	0	1	7246.4	+		22373	8382	12935	13305	17754	17754					0.02251489070908974
RMHRQFMR	8	Unmodified	_RMHRQFMR_					0	0	0		ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2976616031001	2	581.297662	1160.58077	1.1831	0.00068775	2.3658	0.0013752	3.5489	0.002063	581.2988926986109	28.001	0.12067	27.992	27.968	28.088	-0.0089798	1029	100	1.0028336	0.060302198	1.0013142	406.44284	0	24.440125						242	6	3	NaN	NaN	NaN	0.84887	1	14657	14657		0.32989	0	1	23274			22374	4789	12936	13306	17755	17755					0.006903118674472353
RMKSVGHCVS	10	Unmodified	_RMKSVGHCVS_					0	0	0		ENST00000601372.5_1_19:8935711-8942037:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF	ENST00000601372.5_1_19:8935711-8942037:-|nuORF	ENST00000601372.5_1_19:8935711-8942037:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2760604937502	2	552.27606	1102.53757	0.94293	0.00052076	3.3179	0.0018324	4.2609	0.0023532	552.2782899914895	32.394	0.0965	32.394	32.37	32.466	0	1230	55	0.8799654	0.03312534	0.8799654	356.86548	0	13.433807						136	5	4	NaN	NaN	NaN	0.71559	1	12938	12938		6.9844	2.0746	1	10279			22375	7755	12937	13307	17756	17756					-0.009599227004855493
RMLTDPVDQC	10	Unmodified	_RMLTDPVDQC_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.2706407648501	2	589.270641	1176.52673	1.4132	0.00083278	-4.3428	-0.0025591	-2.9296	-0.0017263	589.7698362648157	19.876	0.07214	19.861	19.861	19.934	-0.014141	1191	67	0.90387505	0.040455878	0.9023556	366.2772	0	16.39392						87	4	2	NaN	NaN	NaN	0.5917	1	15117	15117		15.463	4.2923	1	8851.9			22376	2791	12938	13308	17757	17757					-0.05447369865419205
RMLTDPVDQC	10	Unmodified						0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.270641	1176.52673	1.8848	0.0011107	-5.8085	-0.0034228	-3.9236	-0.0023121	589.2682461837121	19.852	0.072077	19.852	19.828	19.9	0	1185	70	0.90755045	0.042292476	0.90755045	367.7666		17.138184	-0.004584	-0.0010432	0.0025974	NaN	15.463	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5600.7			22377	2791	12938	13308							-0.05447369865419205
RMMWEGWCW	9	Unmodified	_RMMWEGWCW_					0	0	0		ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.8418848282334	3	428.841885	1283.50383	1.0767	0.00046174	-0.60067	-0.00025759	0.47604	0.00020414	428.8416044363154	24.478	0.096405	24.478	24.454	24.55	0	1464	28	0.73579943	0.01670587	0.73579943	446.81586	0	10.144684						69	5	2	NaN	NaN	NaN	0.66615	1	18486	18486		2.1026	0.066716	1	5173.1			22378	7616	12939	13309	17758	17758					-0.12658667463892925
RMPEFYNRF	9	Unmodified	_RMPEFYNRF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.303132524	2	630.303133	1258.59171	1.5045	0.00094829	-3.8288	-0.0024133	-2.3243	-0.001465	630.3011962598222	20.333	0.21631	20.333	20.237	20.453	0	1164	52	0.9204082	0.03121245	0.9204082	372.69495	0	12.638672						239	10	4	NaN	NaN	NaN	0.052553	1	17962	17962		45.827	28.968	1	24741			22379	2661	12940	13310	17759	17759					-0.02724007277288365
RMPEFYNRF	9	Unmodified	_RMPEFYNRF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.303132524	2	630.303133	1258.59171	1.1559	0.00072855	-0.54852	-0.00034574	0.60735	0.00038282	630.3042416056352	20.477	0.21663	20.463	20.391	20.608	-0.014141	1161	43	0.9222442	0.025705755	0.92072475	373.4384	0	10.4088745						253	10	3	NaN	NaN	NaN	0.37272	1	17191	17191		14.854	5.108	1	30500			22380	2661	12940	13310	17760	17760					-0.02724007277288365
RMPNSPAPHF	10	Unmodified	_RMPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.1905588999667	3	385.190559	1152.54985	1.576	0.00060706	-2.414	-0.00092984	-0.83797	-0.00032278	385.19012796568035	16.134	0.071938	16.134	16.086	16.158	0	1407	37	0.77102906	0.022222579	0.77102906	468.7742	0	13.510986						69	4	2	NaN	NaN	NaN	0.21269	1	14886	14886		21.85	15.043	1	6063.9			22381	1865	12941	13311	17761	17761					-0.020325629657918398
RMPNSPAPHF	10	Unmodified	_RMPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.2822001166501	2	577.2822	1152.54985	1.9732	0.0011391	-10.235	-0.0059085	-8.2619	-0.0047695	577.276219186767	16.227	0.23978	16.214	16.118	16.358	-0.012995	1227	88	0.88180584	0.053394496	0.8802864	357.42026	0	21.642273						288	11	2	NaN	NaN	NaN	0.064658	1	14382	14382		50.831	17.405	1	61648			22382	1865	12941	13311	17762	17762					-0.020325629657918398
RMPNSPAPHF	10	Unmodified	_RMPNSPAPHF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.1905588999667	3	385.190559	1152.54985	2.273	0.00087552	-2.0929	-0.00080617	0.18005	6.9353E-05	385.19030454768483	16.203	0.095917	16.19	16.142	16.238	-0.012993	1407	31	0.77102906	0.018520832	0.7695096	468.7742	0	11.260376						73	5	2	NaN	NaN	NaN	0.29898	1	14384	14384		17.198	8.2364	1	6528.7			22383	1865	12941	13311	17763	17763					-0.020325629657918398
RMPNSPAPHF	10	Unmodified						0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.2822	1152.54985	1.8942	0.0010935	-14.382	-0.0083026	-12.488	-0.0072091	577.2753269044134	16.158	0.35989	16.158	16.062	16.422	0	1227	67	0.88180584	0.040490866	0.88180584	357.4203		16.412048	-0.028076	-0.0030231	0.00075972	NaN	50.831	269	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49685			22384	1865	12941	13311							-0.020325629657918398
RMSFCSNLTIN	11	Unmodified	_RMSFCSNLTIN_					0	0	0			REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3050148984502	2	643.305015	1284.59548	1.905	0.0012255	-2.0822	-0.0013395	-0.1772	-0.00011399	643.3036044969576	19.324	0.16797	19.324	19.252	19.42	0	1128	67	0.9424274	0.040359855	0.9424274	381.52722	0	16.33908						237	8	3	NaN	NaN	NaN	0.65755	1	18509	18509		10.244	0.49772	1	21546	+		22385	12457	12942	13312	17764	17764					-0.03543705565698474
RMTELSRDMNA	11	Unmodified	_RMTELSRDMNA_					0	0	0		ENSG00000151611|ENST00000649156|MMAA;ENST00000506919.1_1_4:146560261-146567442:+|nuORF	ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.3108285578502	2	662.310829	1322.6071	2.1886	0.0014495	3.8535	0.0025522	6.0421	0.0040018	662.313850943484	23.368	0.12066	23.355	23.307	23.427	-0.013294	1143	49	0.9332562	0.029355824	0.93173677	377.69882	0	11.880615						172	6	3	NaN	NaN	NaN	0.65577	1	18286	18286		10.36	2.7726	1	14550			22386	3746	12943	13313	17765	17765					-0.04129508542359872
RMTELSRDMNA	11	Unmodified						0	0	0		ENSG00000151611|ENST00000649156|MMAA;ENST00000506919.1_1_4:146560261-146567442:+|nuORF	ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	662.310829	1322.6071	1.838	0.0012173	2.6193	0.0017348	4.4573	0.0029521	662.312304229941	23.345	0.16883	23.345	23.296	23.465	0	1146	46	0.93142134	0.027519584	0.93142134	376.95624		11.137482	-0.0051549	-0.00087347	-0.0001577	NaN	10.36	182	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14226			22387	3746	12943	13313							-0.04129508542359872
RNDEKTSLFFG	11	Unmodified	_RNDEKTSLFFG_					0	0	0		tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.32785883055	2	657.327859	1312.64116	0.92263	0.00060647	-1.9324	-0.0012702	-1.0098	-0.00066377	657.3266670896005	28.218	0.21721	28.209	28.112	28.33	-0.0089779	1113	55	0.9515937	0.032996833	0.95007426	385.15045	0	13.355194						227	10	3	NaN	NaN	NaN	0.70497	1	18155	18155		7.1304	0.14601	1	20314			22388	13980	12944	13314	17766	17766					-0.0026502078749217617
RNDEKTSLFFG	11	Unmodified						0	0	0		tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	tr|U7T447|U7T447_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00252PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	657.327859	1312.64116	1.4669	0.00096427	-2.3888	-0.0015702	-0.92188	-0.00060598	657.3271550409607	28.05	0.072378	28.05	28.001	28.074	0	1119	37	0.9479278	0.021997869	0.9479278	383.66672		8.903473	-0.079629	-0.00034695	-0.0010732	NaN	7.1304	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9348.1			22389	13980	12944	13314							-0.0026502078749217617
RNFYRIWN	8	Unmodified	_RNFYRIWN_					0	0	0			REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.8041569792501	2	584.804157	1167.59376	1.6353	0.00095634	1.1427	0.00066828	2.7781	0.0016246	584.8026455009773	29.353	0.096512	29.353	29.353	29.449	0	1179	55	0.9112251	0.03306091	0.9112251	369.2884	0	13.398468						88	5	2	NaN	NaN	NaN	0.82797	1	15399	15399		5.4659	1.4973	1	9304.2	+		22390	10493	12945	13315	17767	17767					0.016667895228465568
RNFYRIWN	8	Unmodified						0	0	0			REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.804157	1167.59376	1.6353	0.00095634	1.1427	0.00066828	2.7781	0.0016246	584.8026455009773	29.353	0.096512	29.353	29.353	29.449	0	1179	55	0.9112251	0.03306091	0.9112251	369.2884		13.398468	-0.0078183	-0.0029524	-0.0010772	NaN	5.4659	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9304.2	+		22391	10493	12945	13315							0.016667895228465568
RNFYRIWN	8	Unmodified						0	0	0			REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	REV__ENST00000531174.1_1_11:64813610-64815186:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.804157	1167.59376	1.293	0.00075616	6.667	0.0038989	7.96	0.004655	584.8098337405368	29.376	0.072384	29.368	29.296	29.368	-0.0077229	1173	61	0.91489893	0.036726475	0.9133795	370.77722		14.883972	0.0078183	0.0035088	0.0010772	NaN	5.4659	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8763.6	+		22392	10493	12945	13315							0.016667895228465568
RNGAGGGP	8	Unmodified	_RNGAGGGP_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.1724443145	2	343.172444	684.330336	1.0623	0.00036456	3.8635	0.0013258	4.9258	0.0016904	343.1736098472347	33.576	0.048176	33.576	33.576	33.624	0	1506	49	0.70979416	0.029749274	0.70979416	290.01443	0	12.155273						56	3	2	NaN	NaN	NaN	0.84876	1	2931	2931		0.39566	0	1	3920.9			22393	1413	12946	13316	17768	17768					-0.024456258620034532
RNGLGHLV	8	Unmodified	_RNGLGHLV_					0	0	0			REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5002608148002	1	865.500261	864.492984	0.65916	0.0005705	1.537	0.0013302	2.1961	0.0019007	865.5019794347894	35.529	0.096523	35.529	35.505	35.602	0.00053024	969	310	1.0393391	0.18819696	1.0378196	211.46799	0	38.291275						805	5	4	NaN	NaN	NaN	0.84876	1	5455	5455		0.39566	0	1	82736	+		22394	11842	12947	13317	17769	17769					0.05531757539995397
RNGSPAQVIF	10	Unmodified	_RNGSPAQVIF_					0	0	0			REV__nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS	REV__nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.79599759615	2	544.795998	1087.57744	1.4822	0.00080752	-5.4133	-0.0029492	-3.9311	-0.0021416	544.7937440261586	23.947	0.1206	23.947	23.875	23.995	0	1233	91	0.87812483	0.055214822	0.87812483	356.17953	0	22.395874						252	6	3	NaN	NaN	NaN	0.20271	1	12288	12288		35.296	5.6982	1	43536	+		22395	13178	12948	13318	17770	17770					0.037156635660721804
RNGSPAQVIF	10	Unmodified						0	0	0			REV__nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS	REV__nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.795998	1087.57744	1.4822	0.00080752	-5.4133	-0.0029492	-3.9311	-0.0021416	544.7937440261586	23.947	0.1206	23.947	23.875	23.995	0	1233	91	0.87812483	0.055214822	0.87812483	356.17953		22.395874	-0.0054376	-0.00067433	0.00075972	NaN	35.296	252	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43536	+		22396	13178	12948	13318							0.037156635660721804
RNIPGITLL	9	Unmodified	_RNIPGITLL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.81365903305	2	498.813659	995.612765	1.8107	0.0009032	-2.3822	-0.0011883	-0.57148	-0.00028506	498.8118239434965	25.66	0.048248	25.648	25.624	25.672	-0.011602	1293	37	0.84127116	0.022136092	0.8397517	341.62515	0	8.989105						93	3	3	NaN	NaN	NaN	0.18779	1	8260	8260		26.115	9.5308	1	9665.9			22397	4947	12949	13319	17771	17771					0.114783260938907
RNKWYLWRKKW	11	Unmodified	_RNKWYLWRKKW_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4702437775999	2	832.470244	1662.92593	2.2316	0.0018577	-6.8719	-0.0057207	-4.6404	-0.003863	832.9663344709197	26.673	0.024122	26.663	26.639	26.663	-0.010643	936	31	1.0593836	0.018211484	1.0578642	427.83554	0	7.3547974						33	2	2	NaN	NaN	NaN	0.78138	1	19787	19787		0	0	1	2128.8	+		22398	11195	12950	13320	17772	17772					0.12098869207352436
RNKWYLWRKKW	11	Unmodified						0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	832.470244	1662.92593	1.9064	0.001587	-8.552	-0.0071193	-6.6457	-0.0055323	832.462016436872	26.65	0.02413	26.65	26.625	26.65	0	936	43	1.0593836	0.025501609	1.0593836	427.83557		10.29892	-0.0065785	-0.0011227	0.00075972	NaN	0	65	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3781.9	+		22399	11195	12950	13320							0.12098869207352436
RNKWYLWRKKW	11	Unmodified						0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	832.470244	1662.92593	2.2316	0.0018577	-6.8719	-0.0057207	-4.6404	-0.003863	832.9663344709197	26.673	0.024122	26.663	26.639	26.663	-0.010643	936	31	1.0593836	0.018211484	1.0578642	427.83554		7.3547974	0.0065785	0.0016746	-0.00075972	NaN	0	33	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2128.8	+		22400	11195	12950	13320							0.12098869207352436
RNSYPNISHR	10	Unmodified	_RNSYPNISHR_					0	0	0			REV__nc|ENSG00000169598|O76075-2|DFFB	REV__nc|ENSG00000169598|O76075-2|DFFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.21453202986663	3	415.214532	1242.62177	1.8334	0.00076124	-5.5232	-0.0022933	-3.6898	-0.0015321	415.21281491673176	18.916	0.096024	18.916	18.892	18.988	0	1476	34	0.72837335	0.020427108	0.72837335	442.46106	0	12.408752						93	5	3	NaN	NaN	NaN	0.77594	1	17597	17597		0.55697	0.066197	1	8321.4	+		22401	10555	12951	13321	17773	17773					0.01016067712248514
RNTKLWIGLF	10	Unmodified	_RNTKLWIGLF_					0	0	0		nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;ENSG00000122224|ENST00000263285|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.36659006055	2	624.36659	1246.71863	0.69106	0.00043148	7.96	0.00497	8.6511	0.0054015	624.8724769600759	37.504	0.12048	37.506	37.458	37.579	0.0028229	1230	64	0.8799654	0.038664997	0.878446	356.3555	0	15.657959						184	6	2	NaN	NaN	NaN	0.77421	1	16960	16960		1.9246	0.22244	1	19338			22402	2316	12952	13322	17774	17774					0.10513661939353369
RNVMYFGGN	9	Unmodified	_RNVMYFGGN_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.2478259830501	2	529.247826	1056.4811	0.71573	0.0003788	-3.084	-0.0016322	-2.3682	-0.0012534	529.7468284633441	29.69	0.19303	29.683	29.61	29.803	-0.0070648	1293	70	0.84127116	0.042416096	0.8397517	341.35678	0	17.210907						292	9	4	NaN	NaN	NaN	0.55027	1	10702	10702		7.5404	0.67717	1	33687		+	22403	210	12953	13323	17775	17775					-0.04488227265505884
RNYTWGHE	8	Unmodified	_RNYTWGHE_					0	0	0			REV__CHRND|p.D85Y|1|0.16|ENSG00000135902|chr2:232528271-232528271|G/T|missense_variant	REV__CHRND|p.D85Y|1|0.16|ENSG00000135902|chr2:232528271-232528271|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.74122237145	2	531.741222	1061.46789	1.4271	0.00075886	-1.6666	-0.00088622	-0.23953	-0.00012737	532.2430730358689	35.023	0.072395	35.023	34.999	35.072	0	1287	28	0.8449601	0.016597629	0.8449601	342.8329	0	6.7342834						34	4	2	NaN	NaN	NaN	0.84756	1	11160	11160		1.072	0	1	1900.5	+		22404	8242	12954	13324	17776	17776					-0.06038342053238921
RPAAGALH	8	Unmodified	_RPAAGALH_					0	0	0			REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	792.4474969628001	1	792.447497	791.44022	1.6023	0.0012698	2.8081	0.0022253	4.4105	0.0034951	792.4493761977711	29.618	0.096546	29.61	29.562	29.659	-0.0070648	501	55	1.3214091	0.032279134	1.3198897	269.24728	0	6.5771484						80	5	2	NaN	NaN	NaN	0.84692	1	4553	4553		1.4396	0	1	6040.7	+		22405	12033	12955	13325	17777	17777					0.03615799477177006
RPAAGALH	8	Unmodified						0	0	0			REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	792.447497	791.44022	1.8096	0.001434	2.5367	0.0020102	4.3462	0.0034442	792.4493422671359	29.594	0.048244	29.594	29.594	29.642	0	501	40	1.3214091	0.023311496	1.3214091	269.24728		4.749878	-0.0081024	-0.00010053	0.00075972	NaN	1.4396	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4583	+		22406	12033	12955	13325							0.03615799477177006
RPAAGALH	8	Unmodified						0	0	0			REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	REV__ENST00000400147.6_1_18:3498882-3499149:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	792.447497	791.44022	1.6023	0.0012698	2.8081	0.0022253	4.4105	0.0034951	792.4493761977711	29.618	0.096546	29.61	29.562	29.659	-0.0070648	501	55	1.3214091	0.032279134	1.3198897	269.24728		6.5771484	0.0081024	0.00011458	-0.00075972	NaN	1.4396	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6040.7	+		22407	12033	12955	13325							0.03615799477177006
RPAAGPAA	8	Unmodified	_RPAAGPAA_					0	0	0		ENSG00000115419|ENST00000320717|GLS;nc|ENSG00000115419|O94925-3|GLS;nc|ENSG00000115419|O94925-2|GLS;ENST00000479552.1_1_2:191745810-191759998:+|nuORF;ENST00000496170.1_1_2:191745882-191760452:+|nuORF	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3943987597999	1	710.394399	709.387122	1.3607	0.00096666	-2.074	-0.0014733	-0.71323	-0.00050667	710.3926788915871	16.47	0.11984	16.47	16.446	16.566	0	1476	40	0.72837335	0.024141133	0.72837335	148.70406	0	4.9286346						111	6	2	NaN	NaN	NaN	0.84945	1	3417	3417		0	0	1	11492			22408	2023	12956	13326	17778	17778					0.020804216944952714
RPAGGKGR	8	Unmodified	_RPAGGKGR_					0	0	0		ENST00000509638.5_1_4:41362723-41362834:+|nuORF	ENST00000509638.5_1_4:41362723-41362834:+|nuORF	ENST00000509638.5_1_4:41362723-41362834:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4692950374001	1	798.469295	797.462019	2.3743	0.0018958	-2.336	-0.0018652	0.038231	3.0527E-05	798.4675288025489	26.046	0.1207	26.035	26.035	26.156	-0.011135	549	43	1.292695	0.025148988	1.2911756	263.36267	0	5.1236267						102	6	2	NaN	NaN	NaN	0.84887	1	4637	4637		0.32989	0	1	8063.4			22409	7348	12957	13327	17779	17779					0.055186042257560075
RPALARSVS	9	Unmodified	_RPALARSVS_					0	0	0		ENST00000577703.1_1_18:9103009-9103312:+|nuORF	ENST00000577703.1_1_18:9103009-9103312:+|nuORF	ENST00000577703.1_1_18:9103009-9103312:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.78543290985004	2	478.785433	955.556313	1.7658	0.00084542	1.5337	0.00073432	3.2995	0.0015797	478.7861071281987	19.42	0.16797	19.42	19.372	19.54	0	1536	133	0.69119483	0.08178407	0.69119483	280.84213	0	33.23001						446	8	3	NaN	NaN	NaN	0.39244	1	7240	7240		14.042	0.30454	1	63261			22410	7668	12958	13328	17780	17780					0.07675698257230579
RPAQVEPLL	9	Unmodified	_RPAQVEPLL_					0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.803291312	2	511.803291	1021.59203	1.1491	0.00058812	-1.3491	-0.00069047	-0.19997	-0.00010234	511.80266484483303	20.525	0.12029	20.511	20.463	20.584	-0.014141	1308	79	0.83204526	0.047966838	0.8305259	337.76157	0	19.47171						339	6	4	NaN	NaN	NaN	0.055351	1	9254	9254		44.638	15.972	1	85784			22411	3608	12959	13329	17781	17781					0.08209735714228827
RPAQVEPLL	9	Unmodified						0	0	0		ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENSG00000147813|ENST00000449291|NAPRT	ENSG00000147813|ENST00000449291|NAPRT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.803291	1021.59203	1.7917	0.00091702	-1.7097	-0.00087504	0.082024	4.198E-05	511.8024559842023	20.477	0.16833	20.477	20.429	20.597	0	1305	79	0.83389086	0.047966838	0.83389086	338.51077		19.47171	-0.01707	-0.00016259	0.0016825	NaN	44.638	335	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82290			22412	3608	12959	13329							0.08209735714228827
RPAVIGDVL	9	Unmodified	_RPAVIGDVL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000463545.1_1_3:154070629-154071064:-|nuORF	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.2847344181001	2	470.284734	938.554916	1.4337	0.00067427	-2.1126	-0.0009935	-0.67881	-0.00031924	470.2839598034343	22.405	0.048141	22.405	22.405	22.453	0	1326	28	0.8209676	0.016622722	0.8209676	333.65634	0	6.7557983						43	3	2	NaN	NaN	NaN	0.44082	1	6796	6796		12.049	1.4437	1	3634.6			22413	1637	12960	13330	17782	17782					0.08318064168486217
RPAVLDPAL	9	Unmodified	_RPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.28473441809996	2	476.284734	950.554916	1.243	0.00059204	-2.0881	-0.00099455	-0.84509	-0.0004025	476.2842105059935	21.127	0.14454	21.127	21.079	21.224	0	1317	49	0.8265074	0.029543579	0.8265074	335.8466	0	12.004883						169	7	3	NaN	NaN	NaN	0.2961	1	7105	7105		19.164	2.7469	1	21900			22414	335	12961	13331	17783	17783					0.07766064168458797
RPAVLDPAL	9	Unmodified	_RPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.28473441809996	2	476.284734	950.554916	0.81176	0.00038663	-2.0873	-0.00099414	-1.2755	-0.00060751	476.28360471705554	21.176	0.12042	21.162	21.114	21.234	-0.014004	1314	49	0.8283535	0.02954036	0.8268341	336.59677	0	12.003571						148	6	3	NaN	NaN	NaN	0.054111	1	6974	6974		45.165	9.8684	1	21559			22415	335	12961	13331	17784	17784					0.07766064168458797
RPDACRPIL	9	Unmodified	_RPDACRPIL_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.78711831905	2	520.787118	1039.55968	1.4674	0.00076419	3.996	0.0020811	5.4634	0.0028453	520.7892696317222	19.539	0.16852	19.524	19.452	19.621	-0.014143	1284	67	0.8468043	0.040587306	0.8452849	343.67383	0	16.47226						237	8	3	NaN	NaN	NaN	0.12328	1	9989	9989		32.453	5.1565	1	26830			22416	7290	12962	13332	17785	17785					0.04148625039579201
RPDACRPIL	9	Unmodified						0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.787118	1039.55968	1.7208	0.00089618	6.0373	0.0031442	7.7582	0.0040403	520.7901372142273	19.516	0.14396	19.516	19.444	19.588	0	1281	46	0.84864825	0.027659655	0.84864825	344.4222		11.225616	-0.0041873	0.0013091	0.0016817	NaN	32.453	146	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27033			22417	7290	12962	13332							0.04148625039579201
RPDALDPAL	9	Unmodified	_RPDALDPAL_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B;nc|ENSG00000171763|Q9BVQ7-2|AFG2B	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.26399897599987	2	484.263999	966.513445	1.7669	0.00085562	-0.82983	-0.00040186	0.93702	0.00045377	484.26351666861365	20.165	0.12014	20.165	20.117	20.237	0	1323	43	0.8228144	0.025856256	0.8228144	334.26727	0	10.504059						92	6	2	NaN	NaN	NaN	0.37272	1	7525	7525		14.854	5.7308	1	10160			22418	4805	12963	13333	17786	17786					0.02884883409114991
RPDALDPAL	9	Unmodified	_RPDALDPAL_					0	0	0		ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-3|AFG2B;nc|ENSG00000171763|Q9BVQ7-2|AFG2B	ENSG00000171763|ENST00000305560|SPATA5L1	ENSG00000171763|ENST00000305560|SPATA5L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.26399897599987	2	484.263999	966.513445	1.9079	0.00092394	-2.5881	-0.0012533	-0.68019	-0.00032939	484.26231439075684	20.188	0.14445	20.174	20.126	20.271	-0.014141	1323	34	0.8228144	0.02031672	0.82129496	334.26727	0	8.253632						109	7	2	NaN	NaN	NaN	0.084037	1	7377	7377		38.131	10.835	1	10484			22419	4805	12963	13333	17787	17787					0.02884883409114991
RPDDVPLSL	9	Unmodified	_RPDDVPLSL_					0	0	0		ENST00000473880.5_1_7:102108514-102108640:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.27710635125	2	506.277106	1010.53966	1.8581	0.0009407	-2.3576	-0.0011936	-0.4995	-0.00025289	506.2765022816366	22.694	0.14477	22.694	22.621	22.766	0	1326	67	0.8209676	0.04060924	0.8209676	333.31314	0	16.487366						165	7	2	NaN	NaN	NaN	0.42817	1	9003	9003		12.57	2.2096	1	12986			22420	4091	12964	13334	17788	17788					0.034811525806162535
RPDDVPLSL	9	Unmodified						0	0	0		ENST00000473880.5_1_7:102108514-102108640:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	ENST00000473880.5_1_7:102108514-102108640:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.277106	1010.53966	1.1964	0.00060571	-3.2267	-0.0016336	-2.0303	-0.0010279	506.27601963502	22.717	0.14467	22.704	22.655	22.8	-0.01354	1302	73	0.8357362	0.0443058	0.8342168	339.3092		17.98819	0.0049944	-0.0004022	0.0066246	NaN	12.57	196	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15241			22421	4091	12964	13334							0.034811525806162535
RPDDYLYSL	9	Unmodified	_RPDDYLYSL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2798460054499	2	571.279846	1140.54514	1.6738	0.00095623	-1.7937	-0.0010247	-0.11983	-6.8458E-05	571.2792379271103	24.14	0.1931	24.14	24.044	24.237	0	1209	76	0.892844	0.045980036	0.892844	361.93933	0	18.639282						334	9	4	NaN	NaN	NaN	0.028569	1	14458	14458		60.984	28.206	1	95556			22422	7200;5454;3420	12965	13335	17789	17789					-0.019511686276018736
RPDDYLYSL	9	Unmodified	_RPDDYLYSL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2798460054499	2	571.279846	1140.54514	1.2067	0.00068934	-0.23224	-0.00013268	0.97441	0.00055666	571.2792653542059	24.14	0.2171	24.127	23.982	24.199	-0.012749	1212	67	0.8910048	0.04046464	0.88948536	361.19376	0	16.403473						158	8	3	NaN	NaN	NaN	0.059222	1	13995	13995		42.995	19.66	1	54494			22423	7200;5454;3420	12965	13335	17790	17790					-0.019511686276018736
RPDGFLLVL	9	Unmodified	_RPDGFLLVL_					0	0	0		ENSG00000198355|ENST00000360612|PIM3	ENSG00000198355|ENST00000360612|PIM3	ENSG00000198355|ENST00000360612|PIM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.3082095144	2	515.30821	1028.60187	1.6477	0.00084905	-1.5769	-0.00081258	0.070776	3.6471E-05	515.3071254989096	30.511	0.12066	30.511	30.439	30.56	0	1245	40	0.87076044	0.023940682	0.87076044	353.44562	0	9.717621						144	6	3	NaN	NaN	NaN	0.40649	1	9731	9731		13.463	0.46021	1	16066			22424	5771	12966	13336	17791	17791					0.08870923719587154
RPDPNFDAL	9	Unmodified	_RPDPNFDAL_					0	0	0		ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	ENSG00000121481|ENST00000367510|RNF2;nc|ENSG00000204227|Q06587-2|RING1	ENSG00000121481|ENST00000367510|RNF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7590807736	2	522.759081	1043.50361	1.3448	0.00070301	0.32042	0.0001675	1.6652	0.00087051	522.7588768650046	20.429	0.24037	20.429	20.309	20.549	0	1296	82	0.8394264	0.049803615	0.8394264	340.66272	0	20.2117						263	11	3	NaN	NaN	NaN	0.13999	1	10351	10351		30.035	12.066	1	43995			22425	2296;5868	12967	13337	17792	17792					-0.016403045962533724
RPDSFVLIL	9	Unmodified	_RPDSFVLIL_					0	0	0		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.3134918575502	2	530.313492	1058.61243	1.8579	0.00098528	-1.8972	-0.0010061	-0.039227	-2.0802E-05	530.3124141001626	29.594	0.24129	29.594	29.522	29.763	0	1251	124	0.8670771	0.075448096	0.8670771	351.81876	0	30.61325						560	11	4	NaN	NaN	NaN	0.19268	1	11044	11044		25.801	7.5675	1	140250			22426	3073	12968	13338	17793	17793					0.08546906374067476
RPDSFVLIL	9	Unmodified	_RPDSFVLIL_					0	0	0		nc|ENSG00000137193|P11309-2|PIM1;ENSG00000137193|ENST00000373509|PIM1	nc|ENSG00000137193|P11309-2|PIM1	nc|ENSG00000137193|P11309-2|PIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.3134918575502	2	530.313492	1058.61243	0.92671	0.00049144	-1.5039	-0.00079753	-0.57717	-0.00030608	530.312936567199	29.618	0.26542	29.61	29.538	29.803	-0.0070648	1251	79	0.8670771	0.047878683	0.8655577	351.81876	0	19.42691						519	12	3	NaN	NaN	NaN	0.012495	1	10808	10808		85.344	29.851	1	141430			22427	3073	12968	13338	17794	17794					0.08546906374067476
RPDSLDPAL	9	Unmodified	_RPDSLDPAL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL;nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.26145628704995	2	492.261456	982.50836	0.98561	0.00048518	-0.68476	-0.00033708	0.30085	0.0001481	492.26129605437416	19.563	0.16855	19.549	19.5	19.669	-0.014141	1329	40	0.81912065	0.024010658	0.8176012	332.6907	0	9.752075						124	8	2	NaN	NaN	NaN	0.21451	1	7797	7797		24.4	6.4306	1	15737			22428	3446	12969	13339	17795	17795					0.016405795465175288
RPDTLDPAL	9	Unmodified	_RPDTLDPAL_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6	ENSG00000161057|ENST00000292644|PSMC2;ENSG00000100519|ENST00000445930|PSMC6	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2692813191499	2	499.269281	996.52401	2.2302	0.0011135	-2.1788	-0.0010878	0.051404	2.5665E-05	499.26832428656377	19.804	0.31248	19.804	19.732	20.045	0	1311	52	0.83019954	0.03137821	0.83019954	337.12497	0	12.741943						563	14	4	NaN	NaN	NaN	0.04743	1	8444	8444		48.002	12.706	1	245370			22429	4092;1256	12970	13340	17796	17796					0.02560866063549838
RPDTLDPAL	9	Unmodified	_RPDTLDPAL_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2;ENST00000216407.4_1_12:68867655-68868498:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6	ENSG00000161057|ENST00000292644|PSMC2;ENSG00000100519|ENST00000445930|PSMC6	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.2692813191499	2	499.269281	996.52401	1.6162	0.00080693	-0.96307	-0.00048083	0.65316	0.0003261	499.2689595519664	19.827	0.31292	19.813	19.717	20.03	-0.014141	1314	55	0.8283535	0.033225775	0.8268341	336.37534	0	13.492218						511	14	4	NaN	NaN	NaN	0.054111	1	8275	8275		45.165	20.603	1	235270			22430	4092;1256	12970	13340	17797	17797					0.02560866063549838
RPEDGVWAL	9	Unmodified	_RPEDGVWAL_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7694484946501	2	521.769448	1041.52434	1.9882	0.0010374	-2.1092	-0.0011005	-0.12096	-6.3113E-05	521.76861402711	23.586	0.26509	23.586	23.513	23.778	0	1296	61	0.8394264	0.036893547	0.8394264	340.67117	0	14.972809						304	12	3	NaN	NaN	NaN	0.017076	1	10273	10273		75.698	43.246	1	159720			22431	6042	12971	13341	17798	17798					0.005242857834218739
RPEDGVWAL	9	Unmodified	_RPEDGVWAL_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7694484946501	2	521.769448	1041.52434	2.0449	0.001067	-2.5586	-0.001335	-0.51365	-0.00026801	521.7683979191172	23.609	0.21688	23.596	23.548	23.765	-0.013048	1296	70	0.8394264	0.042420685	0.83790696	340.67117	0	17.215942						326	10	4	NaN	NaN	NaN	0.026469	1	10067	10067		63.731	34.132	1	158960			22432	6042	12971	13341	17799	17799					0.005242857834218739
RPEDQPWLL	9	Unmodified	_RPEDQPWLL_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.30365545275	2	577.303655	1152.59276	2.1166	0.0012219	-4.0949	-0.002364	-1.9784	-0.0011421	577.3011654958141	25.419	0.26537	25.419	25.346	25.612	0	1215	61	0.8891654	0.03678602	0.8891654	360.4031	0	14.91037						375	12	5	NaN	NaN	NaN	0.060816	1	14891	14891		42.318	21.804	1	66864			22433	2465	12972	13342	17800	17800					0.02256530363274578
RPEEDAAAL	9	Unmodified	_RPEEDAAAL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.2432635338999	2	486.243264	970.471974	1.8666	0.0009076	-1.089	-0.00052952	0.77755	0.00037808	486.24277686569997	14.813	0.28829	14.813	14.765	15.053	0	1344	61	0.8098828	0.03696549	0.8098828	328.995	0	15.016327						484	13	4	NaN	NaN	NaN	0.024221	1	7610	7610		66.656	25.7	1	169930			22434	5079	12973	13343	17801	17801					-0.014442973502127643
RPEEDAAAL	9	Unmodified	_RPEEDAAAL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.2432635338999	2	486.243264	970.471974	1.5265	0.00074227	-1.1991	-0.00058304	0.32747	0.00015923	486.24244099068204	14.812	0.33645	14.8	14.728	15.064	-0.011738	1344	58	0.8098828	0.035119116	0.8083634	328.995	0	14.266266						488	15	4	NaN	NaN	NaN	0.012495	1	7469	7469		85.344	29.931	1	177560			22435	5079	12973	13343	17802	17802					-0.014442973502127643
RPEEDAAALEL	11	Unmodified	_RPEEDAAALEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3065920722	2	607.306592	1212.59863	1.175	0.00071356	-1.3392	-0.00081331	-0.16425	-9.9748E-05	607.8068009507616	21.151	0.14458	21.151	21.103	21.248	0	1218	67	0.8873258	0.04046464	0.8873258	359.44696	0	16.391815						294	7	4	NaN	NaN	NaN	0.03394	1	16794	16794		54.277	11.282	1	67394			22436	5079	12974	13344	17803	17803					0.0008358408429103292
RPEEDAAALEL	11	Unmodified	_RPEEDAAALEL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3065920722	2	607.306592	1212.59863	0.84888	0.00051553	-0.95719	-0.00058131	-0.10831	-6.5777E-05	607.3059234195402	21.152	0.21666	21.138	21.089	21.306	-0.014004	1221	73	0.885486	0.0441432	0.88396657	358.70166	0	17.881958						364	10	4	NaN	NaN	NaN	0.029054	1	16121	16121		57.081	20.846	1	74005			22437	5079	12974	13344	17804	17804					0.0008358408429103292
RPEWYGLF	8	Unmodified	_RPEWYGLF_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2690843539	2	534.269084	1066.52362	2.1124	0.0011286	-0.1277	-6.8226E-05	1.9847	0.0010604	534.2687121812122	28.243	0.28957	28.243	28.194	28.484	0	1209	43	0.892844	0.025747418	0.892844	362.23923	0	10.446106						250	13	3	NaN	NaN	NaN	0.72013	1	11399	11399		17.799	2.3363	1	41552	+		22438	11188	12975	13345	17805	17805					-0.006985088656392691
RPFPEEAIL	9	Unmodified	_RPFPEEAIL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3;ENST00000539399.1_1_12:27152691-27167248:-|nuORF	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	1.7958	0.00096307	-0.98287	-0.00052711	0.81293	0.00043597	536.2947272835205	23.923	0.096441	23.923	23.851	23.947	0	1305	52	0.83389086	0.031361163	0.83389086	338.30478	0	12.7230835						104	5	2	NaN	NaN	NaN	0.097143	1	11591	11591		36.235	17.071	1	12413			22439	664	12976	13346	17806	17806					0.04358029477339187
RPFPEEAIL	9	Unmodified	_RPFPEEAIL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3;ENST00000539399.1_1_12:27152691-27167248:-|nuORF	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2952991044001	2	536.295299	1070.57605	1.2175	0.00065293	-1.3862	-0.00074342	-0.16875	-9.0499E-05	536.2943436932098	23.995	0.28948	23.982	23.837	24.127	-0.013048	1302	79	0.8357362	0.04794085	0.8342168	339.05344	0	19.44934						211	13	3	NaN	NaN	NaN	0.31471	1	11295	11295		17.97	2.507	1	20358			22440	664	12976	13346	17807	17807					0.04358029477339187
RPGAAGGGG	9	Unmodified	_RPGAAGGGG_					0	0	0		ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3532622266002	1	699.353262	698.345986	0.32625	0.00022816	5.7479	0.0040198	6.0742	0.004248	699.35740244546	39.694	0.14469	39.694	39.694	39.839	0	711	55	1.1954219	0.03251815	1.1954219	244.12932	0	6.640854						156	7	2	NaN	NaN	NaN	0.6907	1	3192	3192		0	0	1	19469			22441	6725	12977	13347	17808	17808					-0.015253393449370378
RPGAAGGGG	9	Unmodified	_RPGAAGGGG_					0	0	0		ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3532622266002	1	699.353262	698.345986	0.85001	0.00059445	5.4593	0.003818	6.3093	0.0044125	699.3569616321892	39.668	0.072319	39.673	39.673	39.746	0.0053368	708	52	1.1972283	0.0307132	1.1957089	244.49823	0	6.2722473						97	4	2	NaN	NaN	NaN	0.6907	1	3126	3126		0	0	1	10770			22442	6725	12977	13347	17809	17809					-0.015253393449370378
RPGAAGGGG	9	Unmodified	_RPGAAGGGG_					0	0	0		ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3532622266002	1	699.353262	698.345986	0.9375	0.00065565	5.4865	0.003837	6.424	0.0044926	699.3572582683047	39.066	0.14477	39.071	39.023	39.168	0.0046806	711	55	1.1954219	0.03251815	1.1939025	244.12932	0	6.640854						142	7	2	NaN	NaN	NaN	0.6907	1	3127	3127		0	0	1	12577			22443	6725	12977	13347	17810	17810					-0.015253393449370378
RPGGATVL	8	Unmodified	_RPGGATVL_					0	0	0			REV__ENST00000377625.6_1_13:75860667-75860865:-|nuORF	REV__ENST00000377625.6_1_13:75860667-75860865:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4519136386999	1	770.451914	769.444637	-0.10942	-8.4305E-05	-4.1936	-0.0032309	-4.303	-0.0033152	770.4483195345433	57.139	0.072124	57.138	57.138	57.21	-0.00053787	342	49	1.4161754	0.028528094	1.4146559	288.6973	0	5.8156433						92	4	3	NaN	NaN	NaN	0.84887	1	4276	4276		0.32989	0	1	9878.9	+		22444	11945	12978	13348	17811	17811					0.05069263900077203
RPGGGFAG	8	Unmodified	_RPGGGFAG_					0	0	0		ENST00000545797.6_1_19:3958504-3958831:-|nuORF	ENST00000545797.6_1_19:3958504-3958831:-|nuORF	ENST00000545797.6_1_19:3958504-3958831:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.3630986314	1	718.363099	717.355822	1.3162	0.00094549	-1.914	-0.0013749	-0.5978	-0.00042944	718.3618577204445	35.191	0.072395	35.191	35.191	35.263	-4.5776E-05	1059	31	0.98455137	0.01829207	0.9830319	200.96283	0	3.7337189						58	4	2	NaN	NaN	NaN	0.84876	1	3479	3479		0.39566	0	1	4209.9			22445	7522	12979	13349	17812	17812					-0.014161513395833936
RPGGGGGG	8	Unmodified	_RPGGGGGG_					0	0	0		ENST00000370915.5_1_20:60697546-60697723:+|nuORF;ENST00000606557.1_1_20:17949016-17949277:-|nuORF;ENST00000377759.8_1_20:17937680-17949307:-|nuORF;ENST00000606602.1_1_20:17948785-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF;ENSG00000130449|ENST00000252744|ZSWIM6	ENST00000370915.5_1_20:60697546-60697723:+|nuORF	ENST00000370915.5_1_20:60697546-60697723:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3004983746001	1	614.300498	613.293222	0.88094	0.00054116	5.4119	0.0033245	6.2929	0.0038657	614.303875477736	24.019	0.096443	24.019	23.995	24.092	0	1140	64	0.93509084	0.038535774	0.93509084	191.47292	0	7.890732						125	5	2	NaN	NaN	NaN	0.84945	1	946	946		0	0	1	16518			22446	2643	12980	13350	17813	17813					-0.028892974077621147
RPGNGGGG	8	Unmodified	_RPGNGGGG_					0	0	0			REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16461928240005	2	336.164619	670.314686	0.83018	0.00027908	0.17569	5.9061E-05	1.0059	0.00033814	336.16595712175206	39.02	0.048054	39.02	38.996	39.044	0	1530	79	0.6949163	0.04834789	0.6949163	284.05154	0	19.762543						97	3	3	NaN	NaN	NaN	0.84945	1	2599	2599		0	0	1	7097.9	+		22447	12700	12981	13351	17814	17814					-0.033659123790357626
RPGNGGGG	8	Unmodified	_RPGNGGGG_					0	0	0			REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	REV__ENST00000541788.1_22:38616387-38617064:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3219620982002	1	671.321962	670.314686	1.2744	0.00085554	7.4794	0.0050211	8.7538	0.0058766	671.3255039651692	29.087	0.19304	29.087	29.039	29.232	0	753	88	1.1701111	0.052482963	1.1701111	239.15239	0	10.7267						251	9	3	NaN	NaN	NaN	0.84945	1	2605	2605		0	0	1	25065	+		22448	12700	12981	13351	17815	17815					-0.033659123790357626
RPGPGGGGG	9	Unmodified	_RPGPGGGGG_					0	0	0			REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3532622266002	1	711.353262	710.345986	1.9556	0.0013911	3.8059	0.0027074	5.7615	0.0040985	711.3566364124516	38.778	0.096157	38.782	38.71	38.806	0.0040245	696	34	1.2044523	0.019864798	1.2029328	245.8936	0	4.0554504						56	5	2	NaN	NaN	NaN	0.6907	1	3366	3366		0	0	1	2911.3	+		22449	12056	12982	13352	17816	17816					-0.0207733934494172
RPGWGWLASS	10	Unmodified	_RPGWGWLASS_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|97	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|97	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7828902209	2	558.78289	1115.55123	1.2986	0.00072563	3.1	0.0017322	4.3985	0.0024578	558.7846204900883	21.85	0.19268	21.836	21.812	22.004	-0.013895	1236	79	0.876284	0.047858	0.8747646	355.32132	0	19.405762						138	9	2	NaN	NaN	NaN	0.75966	1	13109	13109		3.9685	0.040405	1	22561	+		22450	8236	12983	13353	17817	17817					-0.001926056054116998
RPHTPAFRR	9	Unmodified	_RPHTPAFRR_					0	0	0			REV__ENST00000254043.7_1_17:39675863-39676046:-|nuORF	REV__ENST00000254043.7_1_17:39675863-39676046:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.8844576383	3	379.884458	1136.63154	1.6985	0.00064523	0.84474	0.0003209	2.5432	0.00096613	379.8848480265997	19.9	0.096243	19.9	19.876	19.972	0	1440	58	0.7506418	0.035241127	0.7506418	456.45444	0	21.429626						104	5	2	NaN	NaN	NaN	0.44082	1	14352	14352		7.6826	0	1	9179.8	+		22451	11508	12984	13354	17818	17818					0.06869300508310516
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2874740723	2	499.287474	996.560395	1.8881	0.00094271	-2.8032	-0.0013996	-0.91511	-0.0004569	499.286004105208	19.612	0.21605	19.612	19.516	19.732	0	1299	67	0.8375814	0.040578544	0.8375814	340.1224	0	16.477997						285	10	3	NaN	NaN	NaN	0.25548	1	8455	8455		21.771	3.9721	1	53125			22452	518	12985	13355	17819	17819					0.061977429602734446
RPKPLAIR	8	Unmodified	_RPKPLAIR_					0	0	0			REV__KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	REV__KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.6257956794	1	950.625796	949.618519	0.43541	0.00041392	-4.2088	-0.004001	-3.7734	-0.0035871	950.6227236547974	53.672	0.10551	53.671	53.647	53.753	-0.00059128	696	31	1.2044523	0.018057942	1.2029328	244.71834	0	3.6689758						49	4	2	NaN	NaN	NaN	0.84945	1	6957	6957		0	0	1	3051.3	+		22453	8675	12986	13356	17820	17820					0.14169469396210843
RPLDRESPGVE	11	Unmodified	_RPLDRESPGVE_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.8860810336	3	418.886081	1253.63641	1.5745	0.00065954	-5.9582	-0.0024958	-4.3837	-0.0018363	419.2183745015924	15.726	0.14406	15.726	15.654	15.798	0	1443	49	0.7487872	0.029678345	0.7487872	454.8179	0	18.026794						132	7	3	NaN	NaN	NaN	0.73309	1	17874	17874		5.2847	0.38394	1	14242			22454	2064	12987	13357	17821	17821					0.019740950697496373
RPLDVDWTL	9	Unmodified	_RPLDVDWTL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7982059341001	2	557.798206	1113.58186	1.6141	0.00090033	-1.095	-0.00061081	0.51902	0.00028951	557.7973773842673	26.625	0.33836	26.625	26.456	26.795	0	1209	73	0.892844	0.044128895	0.892844	362.04398	0	17.894073						403	15	3	NaN	NaN	NaN	0.23358	1	13434	13434		31.675	9.8405	1	94028			22455	4531	12988	13358	17822	17822					0.029611279890104925
RPLDVDWTL	9	Unmodified	_RPLDVDWTL_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7982059341001	2	557.798206	1113.58186	1.2462	0.00069511	-1.2439	-0.00069387	0.0022277	1.2426E-06	557.797546454684	26.673	0.19308	26.663	26.614	26.808	-0.010643	1209	73	0.892844	0.044128895	0.8913246	362.04398	0	17.894073						328	9	3	NaN	NaN	NaN	0.28943	1	13047	13047		27.296	13.255	1	86606			22456	4531	12988	13358	17823	17823					0.029611279890104925
RPLGWVGV	8	Unmodified	_RPLGWVGV_					0	0	0		ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.26106235655004	2	442.261062	882.507572	1.0482	0.00046356	-6.217	-0.0027495	-5.1688	-0.002286	442.2587358242035	12.51	0.12014	12.501	12.429	12.549	-0.0088415	1503	46	0.711653	0.027885437	0.71013355	289.49377	0	11.343536						111	6	2	NaN	NaN	NaN	0.78605	1	5716	5716		11.091	4.2967	1	7305.2			22457	5993	12989	13359	17824	17824					0.061618296881420065
RPLVFFDLKI	10	Unmodified	_RPLVFFDLKI_					0	0	0		nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-12|PML	nc|ENSG00000140464|P29590-12|PML	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1247.7510557725	1	1247.75106	1246.74378	1.3664	0.001705	-0.061954	-7.7303E-05	1.3045	0.0016276	1247.7517957819302	37.504	0.048191	37.506	37.482	37.53	0.0028229	96	61	1.5617468	0.035354853	1.5602274	316.22943	0	7.1588135						150	3	3	NaN	NaN	NaN	0.77967	1	16962	16962		0.59723	0	1	19807			22458	3269	12990	13360	17825	17825					0.13027716741930817
RPMSHVSHI	9	Unmodified	_RPMSHVSHI_					0	0	0			REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2769177735001	2	532.276918	1062.53928	2.1253	0.0011313	-1.4086	-0.00074975	0.71674	0.00038151	532.2773958561588	19.372	0.047981	19.372	19.372	19.42	0	1284	31	0.8468043	0.01844281	0.8468043	343.5767	0	7.482849						38	3	2	NaN	NaN	NaN	0.66196	1	11232	11232		2.4615	0	1	2362.8	+		22459	11730	12991	13361	17826	17826					0.010514543797853548
RPNLWTAVLF	10	Unmodified	_RPNLWTAVLF_					0	0	0		RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8454904777	2	608.84549	1215.67643	0.99642	0.00060666	-10.577	-0.00644	-9.581	-0.0058333	608.839117495969	36.495	0.14476	36.495	36.446	36.591	0	1167	37	0.91857195	0.022035897	0.91857195	372.0939	0	8.92627						103	7	2	NaN	NaN	NaN	0.5917	1	16886	16886		15.463	1.4211	1	9460.9			22460	8111	12992	13362	17827	17827					0.07721686530953775
RPNSIDPAL	9	Unmodified	_RPNSIDPAL_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.7694484946499	2	491.769448	981.524344	1.624	0.00079863	-0.70531	-0.00034685	0.91868	0.00045178	491.76913515385286	18.098	0.26404	18.084	17.988	18.252	-0.013786	1329	49	0.81912065	0.029553175	0.8176012	332.6953	0	12.003387						295	12	3	NaN	NaN	NaN	0.14787	1	7767	7767		28.896	6.7692	1	75044			22461	4392	12993	13363	17828	17828					0.032842857833998096
RPNSIDPAL	9	Unmodified						0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	491.769448	981.524344	2.3287	0.0011452	-1.7457	-0.00085847	0.58299	0.0002867	491.7686222905197	18.077	0.21587	18.077	18.005	18.221	0	1326	46	0.8209676	0.027704597	0.8209676	333.44547		11.252563	-0.0035999	-0.00043325	0.0016832	NaN	28.896	279	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73355			22462	4392	12993	13363							0.032842857833998096
RPPGGGGG	8	Unmodified	_RPPGGGGG_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE;ENST00000362058.2_2_1:16957286-16958865:-|nuORF	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.3317985030002	1	654.331799	653.324522	1.6238	0.0010625	8.0523	0.0052689	9.6762	0.0063314	654.3380114947163	26.239	0.096506	26.228	26.18	26.276	-0.011137	819	43	1.1302601	0.025389671	1.1287407	231.12758	0	5.1919403						74	5	2	NaN	NaN	NaN	0.84945	1	2064	2064		0	0	1	5349.7			22463	3574	12994	13364	17829	17829					-0.016007243736567034
RPPPGGAG	8	Unmodified	_RPPPGGAG_					0	0	0			REV__ENST00000441407.1_1_7:32768273-32768576:+|nuORF	REV__ENST00000441407.1_1_7:32768273-32768576:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3787486956002	1	708.378749	707.371472	1.621	0.0011483	0.8223	0.0005825	2.4433	0.0017308	708.379729080945	17.81	0.095865	17.796	17.748	17.844	-0.013784	1494	61	0.7172283	0.037142277	0.71570885	146.43658	0	7.5833435						101	5	2	NaN	NaN	NaN	0.84887	1	3308	3308		0.32989	0	1	11165	+		22464	12192	12995	13365	17830	17830					0.006081351774810173
RPPPPLLC	8	Unmodified	_RPPPPLLC_					0	0	0		ENST00000262187.9_1_7:151216633-151216756:-|nuORF	ENST00000262187.9_1_7:151216633-151216756:-|nuORF	ENST00000262187.9_1_7:151216633-151216756:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	892.5073200276001	1	892.50732	891.500044	1.5605	0.0013927	7.7695	0.0069343	9.3299	0.008327	892.5143088355053	27.109	0.072426	27.109	27.06	27.133	0	303	40	1.4393384	0.023148298	1.4393384	292.71445	0	4.7075806						62	4	2	NaN	NaN	NaN	0.84651	1	5949	5949		1.6704	0	1	5115.9			22465	6308	12996	13366	17831	17831					0.049953540962064835
RPPPPLLC	8	Unmodified						0	0	0		ENST00000262187.9_1_7:151216633-151216756:-|nuORF	ENST00000262187.9_1_7:151216633-151216756:-|nuORF	ENST00000262187.9_1_7:151216633-151216756:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	892.50732	891.500044	2.5489	0.0022749	7.2985	0.006514	9.8474	0.0087889	892.5147440238509	27.108	0.048248	27.098	27.098	27.146	-0.010126	303	31	1.4393384	0.017805338	1.437819	292.71445		3.6210327	-0.0054514	-0.00032712	-0.00075972	NaN	1.6704	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1820.8			22466	6308	12996	13366							0.049953540962064835
RPPRQKRRR	9	Unmodified	_RPPRQKRRR_					0	0	0			REV__ENST00000572285.5_1_17:7132813-7133230:-|nuORF	REV__ENST00000572285.5_1_17:7132813-7133230:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1249.7824645265	1	1249.78246	1248.77519	1.9168	0.0023956	-6.1062	-0.0076314	-4.1894	-0.0052358	1249.7749599496028	41.209	0.072144	41.209	41.209	41.281	0	627	124	1.24593	0.073851466	1.24593	252.27693	0	14.953506						194	4	2	NaN	NaN	NaN	0.68801	1	17755	17755		0.23014	0	1	20308	+		22467	8355	12997	13367	17832	17832					0.16075147339256546
RPPRQKRRR	9	Unmodified						0	0	0			REV__ENST00000572285.5_1_17:7132813-7133230:-|nuORF	REV__ENST00000572285.5_1_17:7132813-7133230:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1249.78246	1248.77519	1.9168	0.0023956	-6.1062	-0.0076314	-4.1894	-0.0052358	1249.7749599496028	41.209	0.072144	41.209	41.209	41.281	0	627	124	1.24593	0.073851466	1.24593	252.27693		14.953506	-0.063519	-0.00045371	0.0025611	NaN	0.23014	194	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20308	+		22468	8355	12997	13367							0.16075147339256546
RPPVVCLL	8	Unmodified	_RPPVVCLL_					0	0	0			REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5386201560001	1	896.53862	895.531344	-0.35637	-0.0003195	-8.5175	-0.0076362	-8.8738	-0.0079557	896.5332925786922	55.698	0.096333	55.698	55.674	55.77	-0.00059128	225	46	1.4855686	0.026635766	1.4840492	302.09555	0	5.4164734						158	5	4	NaN	NaN	NaN	0.84207	1	5883	5883		3.5732	0.41988	1	13133	+		22469	10954	12998	13368	17833	17833					0.07939927130291835
RPPVVCLL	8	Unmodified						0	0	0			REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	896.53862	895.531344	1.7849	0.0016002	-7.1956	-0.0064511	-5.4107	-0.0048509	896.532389702065	55.701	0.072319	55.701	55.677	55.749	0	228	61	1.4837929	0.03551638	1.4837929	301.73444		7.2223816	0.0013985	0.00047647	-0.00012814	NaN	3.5732	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12585	+		22470	10954	12998	13368							0.07939927130291835
RPPVVCLL	8	Unmodified						0	0	0			REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	REV__ZNF74|p.G633D|1|0.16|ENSG00000185252|chr22:20406931-20406931|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	896.53862	895.531344	-0.35637	-0.0003195	-8.5175	-0.0076362	-8.8738	-0.0079557	896.5332925786922	55.698	0.096333	55.698	55.674	55.77	-0.00059128	225	46	1.4855686	0.026635766	1.4840492	302.09555		5.4164734	-0.0013985	-0.00070864	0.00012814	NaN	3.5732	158	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13133	+		22471	10954	12998	13368							0.07939927130291835
RPQGSYFVIL	10	Unmodified	_RPQGSYFVIL_					0	0	0		ENST00000547181.5_1_12:48482530-48482686:-|nuORF	ENST00000547181.5_1_12:48482530-48482686:-|nuORF	ENST00000547181.5_1_12:48482530-48482686:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.329673238	2	590.329673	1178.64479	1.5939	0.0009409	-7.9885	-0.0047158	-6.3946	-0.0037749	590.324933458525	25.009	0.16894	25.009	24.912	25.081	0	1152	55	0.92775106	0.033046663	0.92775106	375.94467	0	13.391235						144	8	2	NaN	NaN	NaN	0.62092	1	15792	15792		13.463	3.8514	1	30893			22472	7528	12999	13369	17834	17834					0.0626169377703718
RPQGSYFVIL	10	Unmodified						0	0	0		ENST00000547181.5_1_12:48482530-48482686:-|nuORF	ENST00000547181.5_1_12:48482530-48482686:-|nuORF	ENST00000547181.5_1_12:48482530-48482686:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.329673	1178.64479	1.5531	0.00091682	-8.7043	-0.0051384	-7.1512	-0.0042216	590.3241464321768	25.201	0.072412	25.189	25.141	25.214	-0.012011	1158	46	0.92408	0.027540386	0.9225606	374.4571		11.159973	0.090387	-0.00053102	-0.0025952	NaN	13.463	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8270			22473	7528	12999	13369							0.0626169377703718
RPRGERRL	8	Unmodified	_RPRGERRL_					0	0	0			REV__ENST00000336273.7_1_8:98656420-98656720:+|nuORF	REV__ENST00000336273.7_1_8:98656420-98656720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3152231920501	2	520.315223	1038.61589	1.1507	0.00059872	7.2211	0.0037572	8.3718	0.004356	520.3194883468769	32.949	0.12072	32.949	32.9	33.021	0	1209	37	0.892844	0.0220716	0.892844	362.36325	0	8.957825						67	6	2	NaN	NaN	NaN	0.83913	1	10165	10165		3.9685	0	1	5413.4	+		22474	11762	13000	13370	17835	17835					0.09813013991265507
RPRRREPLT	9	Unmodified	_RPRRREPLT_					0	0	0		ENST00000588523.1_1_19:14071181-14071804:+|nuORF	ENST00000588523.1_1_19:14071181-14071804:+|nuORF	ENST00000588523.1_1_19:14071181-14071804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.2389004844	3	394.2389	1179.69487	1.7172	0.00067699	7.3454	0.0028958	9.0626	0.0035728	394.24116550136057	21.898	0.07233	21.898	21.898	21.97	0	1473	34	0.7302302	0.020422697	0.7302302	443.84842	0	12.41333						47	4	2	NaN	NaN	NaN	0.67989	1	15830	15830		0.38509	0	1	2510.8			22475	7714	13001	13371	17836	17836					0.11221241225553058
RPRYFAPHPRY	11	Unmodified	_RPRYFAPHPRY_					0	0	0			REV__ENSG00000105605|ENST00000391767|CACNG7	REV__ENSG00000105605|ENST00000391767|CACNG7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.3889194514	2	730.388919	1458.76329	1.6656	0.0012165	1.8903	0.0013806	3.5559	0.0025972	730.8916040646436	30.053	0.096569	30.053	29.98	30.077	0	1041	82	0.9955231	0.049343407	0.9955231	402.50986	0	19.950562						126	5	2	NaN	NaN	NaN	0.76488	1	20423	20423		2.8895	0	1	10786	+		22476	8965	13002	13372	17837	17837					0.05225485805408425
RPSDLIHGEVL	11	Unmodified	_RPSDLIHGEVL_					0	0	0		ENST00000483414.1_1_7:73511493-73523492:+|nuORF;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3407692405501	2	618.340769	1234.66699	0.69771	0.00043142	-2.5626	-0.0015846	-1.8649	-0.0011532	618.3394342806289	20.646	0.12056	20.632	20.584	20.704	-0.014086	1131	70	0.94059354	0.04220581	0.93907416	380.94858	0	17.09372						149	6	2	NaN	NaN	NaN	0.73717	1	16672	16672		5.0169	0.10713	1	12074			22477	1613	13003	13373	17838	17838					0.05903873454803943
RPSGRSRRPSY	11	Unmodified	_RPSGRSRRPSY_					0	0	0			REV__ENSG00000136450|ENST00000258962|SRSF1	REV__ENSG00000136450|ENST00000258962|SRSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.8579834637501	2	659.857983	1317.70141	1.395	0.00092052	-7.945	-0.0052426	-6.55	-0.004322	659.8526698411673	24.429	0.16891	24.417	24.368	24.537	-0.012749	1098	67	0.960755	0.0403077	0.9592356	388.8429	0	16.313568						242	8	3	NaN	NaN	NaN	0.6875	1	18227	18227		8.2775	2.5834	1	26463	+		22478	9659	13004	13374	17839	17839					0.05527134386261423
RPSKVLDSPFP	11	Unmodified	_RPSKVLDSPFP_					0	0	0		ITGA2B|p.Q436K|1|0.31|ENSG00000005961|chr17:44380966-44380966|G/T|missense_variant	ITGA2B|p.Q436K|1|0.31|ENSG00000005961|chr17:44380966-44380966|G/T|missense_variant	ITGA2B|p.Q436K|1|0.31|ENSG00000005961|chr17:44380966-44380966|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8456874429501	2	621.845687	1241.67682	2.0019	0.0012449	-5.3996	-0.0033577	-3.3977	-0.0021128	622.3449276914763	54.524	0.19257	54.524	54.476	54.668	0	1134	64	0.9387595	0.038523257	0.9387595	380.18204	0	15.601288						690	9	7	NaN	NaN	NaN	0.76803	1	17578	17578		2.3381	0.1618	1	437730			22479	7826	13005	13375	17840	17840					0.06565061460173638
RPSPTLVQ	8	Unmodified	_RPSPTLVQ_					0	0	0			REV__ENST00000471405.5_1_7:135366313-135386730:-|nuORF	REV__ENST00000471405.5_1_7:135366313-135386730:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.2612593218	2	449.261259	896.507966	1.4827	0.00066611	-6.985	-0.0031381	-5.5024	-0.002472	449.25810924101165	14.788	0.072062	14.776	14.728	14.8	-0.011738	1377	25	0.7895419	0.0148022175	0.78802246	321.10144	0	6.0199585						53	4	2	NaN	NaN	NaN	0.79607	1	5899	5899		9.746	2.8828	1	3695.8	+		22480	10350	13006	13376	17841	17841					0.05557204617332445
RPSTTEKYIFI	11	Unmodified	_RPSTTEKYIFI_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.8719021934501	2	677.871902	1353.72925	1.2719	0.00086219	-9.8706	-0.006691	-8.5987	-0.0058288	677.8649845418872	36.88	0.19248	36.88	36.832	37.024	0	1056	73	0.9863805	0.043910444	0.9863805	399.10394	0	17.766846						331	9	4	NaN	NaN	NaN	0.43809	1	19594	19594		20.688	0.17433	1	58190			22481	5264	13007	13377	17842	17842					0.06653599803144061
RPSTTEKYIFI	11	Unmodified	_RPSTTEKYIFI_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.8719021934501	2	677.871902	1353.72925	1.0057	0.00068171	-10.702	-0.0072548	-9.6967	-0.0065731	677.8649278038429	36.878	0.16821	36.88	36.832	37	0.0022507	1053	55	0.9882094	0.032918632	0.98669	399.84396	0	13.319366						275	8	4	NaN	NaN	NaN	0.50669	1	18711	18711		18.233	0.2638	1	47700			22482	5264	13007	13377	17843	17843					0.06653599803144061
RPTPQDYEM	9	Unmodified	_RPTPQDYEM_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7556808049	2	568.755681	1135.49681	1.8711	0.0010642	-1.9159	-0.0010897	-0.044821	-2.5492E-05	568.7554688514829	16.062	0.26392	16.062	15.942	16.206	0	1257	76	0.86339295	0.046064615	0.86339295	350.0191	0	18.674591						235	12	3	NaN	NaN	NaN	0.25548	1	14286	14286		21.771	12.809	1	23799			22483	107	13008	13378	17844	17844					-0.06551985539135785
RPTPQDYEM	9	Unmodified	_RPTPQDYEM_					0	0	0		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7556808049	2	568.755681	1135.49681	1.8648	0.0010606	-3.5227	-0.0020036	-1.6579	-0.00094294	568.7544219074698	16.059	0.23967	16.047	15.927	16.166	-0.012611	1260	67	0.8615505	0.04051274	0.8600311	349.27222	0	16.423859						221	11	3	NaN	NaN	NaN	0.12104	1	13817	13817		32.778	18.736	1	25555			22484	107	13008	13378	17845	17845					-0.06551985539135785
RPTPQDYEM	9	Oxidation (M)	_RPTPQDYEM(Oxidation (M))_		RPTPQDYEM(1)		RPTPQDYEM(69)	0	0	1		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7531381159499	2	576.753138	1151.49172	2.0251	0.001168	-2.299	-0.001326	-0.27397	-0.00015801	576.7517272351276	13.445	0.24018	13.445	13.373	13.613	0	1257	43	0.86339295	0.025791943	0.86339295	349.9608	0	10.454315						258	11	3	NaN	NaN	NaN	0.022185	1	14849	14849		69.233	48.72	1	36666			22485	107	13008	13379	17846	17846		8			-0.07796289401767353
RPTPQDYEM	9	Oxidation (M)	_RPTPQDYEM(Oxidation (M))_		RPTPQDYEM(1)		RPTPQDYEM(93)	0	0	1		CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7531381159499	2	576.753138	1151.49172	1.1404	0.00065771	-0.42055	-0.00024256	0.7198	0.00041515	576.7526428742912	13.421	0.19198	13.411	13.339	13.531	-0.010098	1254	43	0.8652351	0.025789201	0.86371565	350.70746	0	10.453186						216	9	3	NaN	NaN	NaN	0.0098181	1	14342	14342		92.758	57.461	1	29847			22486	107	13008	13379	17847	17847		8			-0.07796289401767353
RPTQSFVKFM	10	Unmodified	_RPTQSFVKFM_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.22174757803333	3	414.221748	1239.64341	1.1434	0.00047362	4.0691	0.0016855	5.2125	0.0021591	414.22332958199485	21.97	0.24085	21.956	21.86	22.101	-0.013895	1437	61	0.7524962	0.037093878	0.75097674	457.12683	0	22.533844						287	11	2	NaN	NaN	NaN	0.73114	1	16784	16784		3.0365	0.33232	1	82201			22487	6104	13009	13380	17848	17848					0.03317736416624939
RPTSVDPAL	9	Unmodified	_RPTSVDPAL_					0	0	0		ENSG00000105373|ENST00000246802|NOP53;ENST00000599253.1_1_19:48248882-48249496:+|nuORF;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF	ENSG00000105373|ENST00000246802|NOP53	ENSG00000105373|ENST00000246802|NOP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.263998976	2	478.263999	954.513445	1.8846	0.00090134	-2.2652	-0.0010834	-0.38061	-0.00018203	478.2631599393265	16.782	0.2398	16.782	16.734	16.973	0	1353	52	0.8043377	0.031422377	0.8043377	326.81873	0	12.767548						349	11	5	NaN	NaN	NaN	0.097143	1	7199	7199		36.235	11.673	1	79181			22488	1531	13010	13381	17849	17849					0.03436883409131042
RPTSVDPAL	9	Unmodified	_RPTSVDPAL_					0	0	0		ENSG00000105373|ENST00000246802|NOP53;ENST00000599253.1_1_19:48248882-48249496:+|nuORF;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF	ENSG00000105373|ENST00000246802|NOP53	ENSG00000105373|ENST00000246802|NOP53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.263998976	2	478.263999	954.513445	1.7694	0.00084623	-1.5386	-0.00073585	0.23078	0.00011037	478.2639543094567	16.802	0.23966	16.789	16.717	16.957	-0.013294	1350	76	0.80618626	0.046224415	0.8046668	327.56985	0	18.78189						386	11	4	NaN	NaN	NaN	0.03618	1	7052	7052		52.78	18.341	1	85354			22489	1531	13010	13381	17850	17850					0.03436883409131042
RPVAQDVAL	9	Unmodified	_RPVAQDVAL_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.7798162157	2	484.779816	967.545079	2.1768	0.0010553	-3.9697	-0.0019244	-1.7929	-0.00086915	484.77857857564794	17.717	0.14382	17.717	17.693	17.837	0	1323	34	0.8228144	0.020314455	0.8228144	334.2623	0	8.2526245						72	7	2	NaN	NaN	NaN	0.33202	1	7545	7545		16.858	1.3956	1	5826.5			22490	4576	13011	13382	17851	17851					0.06000876163091107
RPVLMEFL	8	Unmodified	_RPVLMEFL_					0	0	0			REV__ENST00000566223.1_1_16:20814981-20817407:-|nuORF	REV__ENST00000566223.1_1_16:20814981-20817407:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5597495286	1	1004.55975	1003.55247	1.8722	0.0018808	-0.32502	-0.0003265	1.5472	0.0015543	1005.5622903292285	54.5	0.12048	54.5	54.5	54.62	0	162	61	1.5228153	0.03543353	1.5228153	309.1649	0	7.1937866						307	6	4	NaN	NaN	NaN	0.8439	1	8740	8740		3.1533	0	1	34127	+		22491	12801	13012	13383	17852	17852					0.050838924391541696
RPVPQKEEQ	9	Unmodified	_RPVPQKEEQ_					0	0	0		nc|ENSG00000102543|Q9BWV3-4|CDADC1;ENSG00000102543|ENST00000251108|CDADC1	nc|ENSG00000102543|Q9BWV3-4|CDADC1	nc|ENSG00000102543|Q9BWV3-4|CDADC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7987372503501	2	555.798737	1109.58292	-0.05683	-3.1586E-05	9.0865	0.0050503	9.0297	0.0050187	556.3061470648164	55.218	0.14429	55.217	55.169	55.314	-0.00061798	1218	61	0.8873258	0.036801934	0.8858064	359.8222	0	14.923645						608	7	8	NaN	NaN	NaN	0.63698	1	12896	12896		3.9685	1.507	1	243650			22492	1382	13013	13384	17853	17853					0.03251342357907561
RPVPQKEEQ	9	Unmodified						0	0	0		nc|ENSG00000102543|Q9BWV3-4|CDADC1;ENSG00000102543|ENST00000251108|CDADC1	nc|ENSG00000102543|Q9BWV3-4|CDADC1	nc|ENSG00000102543|Q9BWV3-4|CDADC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.798737	1109.58292	1.8381	0.0010216	7.3509	0.0040856	9.189	0.0051072	556.3050498438338	55.22	0.14425	55.22	55.172	55.316	0	1221	61	0.885486	0.036801934	0.885486	359.07614		14.923645	0.0013857	-0.00087731	-0.00016018	NaN	3.9685	626	7	8	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263990			22493	1382	13013	13384							0.03251342357907561
RPVYTLKE	8	Unmodified	_RPVYTLKE_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.29001676125	2	503.290017	1004.56548	1.6781	0.00084457	-1.0508	-0.00052885	0.62731	0.00031572	503.2895448821306	55.196	0.07217	55.196	55.172	55.244	0	1317	46	0.8265074	0.027689636	0.8265074	335.58908	0	11.242889						109	4	3	NaN	NaN	NaN	0.84512	1	8777	8777		2.4615	0.28518	1	13018			22494	4773	13014	13385	17854	17854					0.06338046822895649
RPVYTLKE	8	Unmodified	_RPVYTLKE_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.29001676125	2	503.290017	1004.56548	-0.51438	-0.00025888	1.9891	0.0010011	1.4747	0.00074222	503.2907026535867	55.218	0.16824	55.217	55.169	55.338	-0.00061798	1314	40	0.8283535	0.024000287	0.8268341	336.33865	0	9.744873						140	8	3	NaN	NaN	NaN	0.83211	1	8604	8604		4.9097	0.49665	1	11990			22495	4773	13014	13385	17855	17855					0.06338046822895649
RPWPRGCSW	9	Unmodified	_RPWPRGCSW_					0	0	0		ENST00000400301.5_2_1:22084220-22109545:-|nuORF	ENST00000400301.5_2_1:22084220-22109545:-|nuORF	ENST00000400301.5_2_1:22084220-22109545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.7770849490001	2	572.777085	1143.53962	2.2334	0.0012792	-5.2873	-0.0030284	-3.0539	-0.0017492	572.774327318673	25.539	0.21711	25.539	25.515	25.732	0	1230	127	0.8799654	0.07730913	0.8799654	356.7075	0	31.33844						504	10	3	NaN	NaN	NaN	0.094712	1	14574	14574		36.586	3.8084	1	108440			22496	6828	13015	13386	17856	17856					-0.026411259003680243
RPYDAEVSL	9	Unmodified	_RPYDAEVSL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2667386302	2	525.266739	1048.51892	1.5224	0.00079969	-0.75822	-0.00039827	0.76423	0.00040142	525.2661593489916	19.372	0.19193	19.372	19.324	19.516	0	1308	64	0.83204526	0.03874451	0.83204526	337.64624	0	15.722626						201	9	2	NaN	NaN	NaN	0.11656	1	10567	10567		33.425	4.5297	1	38069			22497	560	13016	13387	17857	17857					-0.00339437799038933
RPYHTTDDLRM	11	Unmodified	_RPYHTTDDLRM_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.8380677636	2	702.838068	1403.66158	1.2613	0.00088647	-1.8758	-0.0013184	-0.61454	-0.00043192	702.8370337972748	22.573	0.048254	22.573	22.549	22.597	0	1074	58	0.9754029	0.034768105	0.9754029	394.5203	0	14.062622						117	3	3	NaN	NaN	NaN	0.7072	1	20093	20093		6.9844	0.73415	1	14428			22498	2693	13017	13388	17858	17858					-0.024101733993347807
RPYQCTTCE	9	Unmodified	_RPYQCTTCE_					0	0	0		nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.4881646719666	3	367.488165	1099.44266	1.701	0.0006251	2.5263	0.00092839	4.2273	0.0015535	367.82293703303236	27.712	0.024126	27.712	27.688	27.712	0	1503	28	0.711653	0.016729414	0.711653	432.921	0	10.177063						43	2	3	NaN	NaN	NaN	0.62619	1	12809	12809		2.3381	1.1613	1	3055.9			22499	7999	13018	13389	17859	17859					-0.10307900962357053
RQAEEKLNY	9	Unmodified	_RQAEEKLNY_					0	0	0		nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000197457|ENST00000370053|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	nc|ENSG00000197457|Q9NZ72-2|STMN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7961945614001	2	575.796195	1149.57784	1.9868	0.001144	-5.2506	-0.0030233	-3.2637	-0.0018793	575.7928707621519	26.408	0.24137	26.408	26.263	26.505	0	1191	82	0.90387505	0.04962623	0.90387505	366.3767	0	20.115509						315	11	3	NaN	NaN	NaN	0.35794	1	14789	14789		15.463	1.9996	1	45242			22500	5704	13019	13390	17860	17860					0.009030384952893655
RQAPVPTK	8	Unmodified	_RQAPVPTK_					0	0	0			REV__ENST00000465826.5_1_3:12640686-12645676:-|nuORF	REV__ENST00000465826.5_1_3:12640686-12645676:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.7692515294	2	448.769252	895.52395	0.4324	0.00019405	0.020486	9.1935E-06	0.45288	0.00020324	448.7694931015237	41.065	0.096107	41.065	41.017	41.113	0	1404	40	0.77288127	0.024073124	0.77288127	314.33084	0	9.790558						71	5	2	NaN	NaN	NaN	0.84727	1	6000	6000		1.2418	0	1	6886.9	+		22501	9527	13020	13391	17861	17861					0.07200910854226095
RQAPVTRVLVL	11	Unmodified	_RQAPVTRVLVL_					0	0	0		ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7895665438	1	1251.78957	1250.78229	1.3272	0.0016614	-1.1709	-0.0014657	0.15636	0.00019573	1251.7881648706189	40.342	0.21633	40.349	40.157	40.373	0.0067558	795	127	1.1447623	0.076046586	1.1432428	231.78833	0	15.39769						336	10	2	NaN	NaN	NaN	0.77843	1	17045	17045		0.51604	0	1	19621			22502	251	13021	13392	17862	17862					0.16693022376466615
RQAREHEERAK	11	Unmodified	_RQAREHEERAK_					0	0	0			REV__ENSG00000100380|ENST00000216218|ST13	REV__ENSG00000100380|ENST00000216218|ST13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.5833954753666	3	470.583395	1408.72836	1.7193	0.00080905	0.89741	0.00042231	2.6167	0.0012314	470.58381141393596	18.077	0.095898	18.077	18.053	18.149	0	1377	43	0.7895419	0.02590108	0.7895419	478.99774	0	15.713623						103	5	2	NaN	NaN	NaN	0.66717	1	20137	20137		4.5433	0	1	15647	+		22503	8814	13022	13393	17863	17863					0.04034198206772999
RQESLSPCRRR	11	Unmodified	_RQESLSPCRRR_					0	0	0			REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.37040073475	2	694.370401	1386.72625	1.5612	0.001084	-1.224	-0.00084993	0.33715	0.0002341	694.3677818458649	21.585	0.048288	21.571	21.547	21.595	-0.013895	1050	46	0.9900381	0.027436674	0.9885187	400.4875	0	11.098602						79	3	3	NaN	NaN	NaN	0.76488	1	19023	19023		2.8895	0.29002	1	5926	+		22504	11505	13023	13394	17864	17864					0.04835446197307647
RQFLYRGLH	9	Unmodified	_RQFLYRGLH_					0	0	0			REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3330815942	2	595.333082	1188.65161	1.376	0.0008192	-0.11713	-6.973E-05	1.2589	0.00074947	595.3326702723446	21.633	0.24104	21.633	21.488	21.73	0	1131	67	0.94059354	0.040368617	0.94059354	381.11157	0	16.356659						331	11	3	NaN	NaN	NaN	0.47587	1	16128	16128		10.605	2.3601	1	40902	+		22505	13326	13024	13395	17865	17865					0.06483051448253718
RQFLYRGLH	9	Unmodified						0	0	0			REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.333082	1188.65161	1.376	0.0008192	-0.11713	-6.973E-05	1.2589	0.00074947	595.3326702723446	21.633	0.24104	21.633	21.488	21.73	0	1131	67	0.94059354	0.040368617	0.94059354	381.11157		16.356659	-0.017106	-0.0036738	0.00075972	NaN	10.605	331	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40902	+		22506	13326	13024	13395							0.06483051448253718
RQFLYRGLH	9	Unmodified						0	0	0			REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.333082	1188.65161	1.0714	0.00063784	4.5909	0.0027331	5.6623	0.003371	595.3363540619831	21.681	0.096312	21.667	21.667	21.764	-0.013895	1131	43	0.94059354	0.025678039	0.93907416	381.11154		10.404266	0.017106	0.0019319	-0.00075972	NaN	10.605	97	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15246	+		22507	13326	13024	13395							0.06483051448253718
RQGGGGGG	8	Unmodified	_RQGGGGGG_					0	0	0		ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3063120340001	1	645.306312	644.299036	1.7762	0.0011462	2.8941	0.0018676	4.6703	0.0030138	645.3081205186187	34.998	0.072357	34.998	34.926	34.998	-4.5776E-05	732	46	1.1827712	0.027117252	1.1812518	241.93506	0	5.546814						85	4	2	NaN	NaN	NaN	0.84945	1	1770	1770		0	0	1	8106.4			22508	7312	13025	13396	17866	17866					-0.03734198896086127
RQGGGGGG	8	Unmodified	_RQGGGGGG_					0	0	0		ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3063120340001	1	645.306312	644.299036	1.7615	0.0011367	2.9166	0.0018821	4.678	0.0030188	645.3082440980016	35.022	0.048264	35.022	35.022	35.07	-4.5776E-05	717	46	1.1918083	0.027102828	1.1902889	243.78362	0	5.5438538						56	3	2	NaN	NaN	NaN	0.84945	1	1771	1771		0	0	1	7155.3			22509	7312	13025	13396	17867	17867					-0.03734198896086127
RQGGGGGG	8	Unmodified	_RQGGGGGG_					0	0	0		ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3063120340001	1	645.306312	644.299036	1.5557	0.0010039	4.3906	0.0028333	5.9462	0.0038371	645.308717787302	35.143	0.096546	35.143	35.094	35.191	-4.5776E-05	732	49	1.1827712	0.02892983	1.1812518	241.93506	0	5.917557						98	5	2	NaN	NaN	NaN	0.84945	1	1772	1772		0	0	1	9761.6			22510	7312	13025	13396	17868	17868					-0.03734198896086127
RQGGGGGG	8	Unmodified	_RQGGGGGG_					0	0	0		ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3063120340001	1	645.306312	644.299036	1.6429	0.0010602	5.2639	0.0033968	6.9067	0.004457	645.3093070231956	34.13	0.12072	34.129	34.08	34.201	-0.0012474	732	55	1.1827712	0.0325495	1.1812518	241.93506	0	6.6579742						120	6	2	NaN	NaN	NaN	0.84945	1	1773	1773		0	0	1	8381.7			22511	7312	13025	13396	17869	17869					-0.03734198896086127
RQGGGGGG	8	Unmodified						0	0	0		ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	ENST00000502492.5_2_17:47007783-47007840:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	645.306312	644.299036	0.95697	0.00061754	1.6803	0.0010843	2.6372	0.0017018	645.3074579667066	35.265	0.21717	35.265	35.217	35.434	0	732	76	1.1827712	0.04521966	1.1827712	241.93507		9.249664	0.13347	-0.00045635	0.00075972	NaN	0	161	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12891			22512	7312	13025	13396							-0.03734198896086127
RQGGKVRP	8	Unmodified	_RQGGKVRP_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.5377089536001	1	897.537709	896.530432	3.1644	0.0028401	2.9579	0.0026548	6.1222	0.0054949	897.540078806462	25.829	0.048262	25.817	25.817	25.865	-0.011602	339	31	1.4179583	0.017824411	1.4164388	288.34183	0	3.6245728						38	3	2	NaN	NaN	NaN	0.84727	1	5903	5903		1.2418	0	1	2383.3	+		22513	9471	13026	13397	17870	17870					0.07802848805613394
RQGGPGAG	8	Unmodified	_RQGGPGAG_					0	0	0			REV__ENSG00000188396|ENST00000339355|DYNLT4	REV__ENSG00000188396|ENST00000339355|DYNLT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3532622266001	1	699.353262	698.345986	0.53202	0.00037207	7.2955	0.0051021	7.8275	0.0054742	699.3586512611486	40.991	0.19231	40.998	40.95	41.143	0.0074921	708	49	1.1972283	0.028904915	1.1957089	244.49823	0	5.9029694						144	9	2	NaN	NaN	NaN	0.84692	1	3128	3128		1.4396	0	1	13971	+		22514	11054	13027	13398	17871	17871					-0.015253393449484065
RQGSGARMI	9	Unmodified	_RQGSGARMI_					0	0	0		nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENSG00000221866|ENST00000321063|PLXNA4	nc|ENSG00000221866|Q9HCM2-4|PLXNA4	nc|ENSG00000221866|Q9HCM2-4|PLXNA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.26126770930006	2	488.261268	974.507982	1.9495	0.00095188	-7.8384	-0.0038272	-5.8889	-0.0028753	488.25749818012395	20.213	0.072203	20.198	20.174	20.246	-0.014141	1326	34	0.8209676	0.020314455	0.81944823	333.47867	0	8.25177						56	4	2	NaN	NaN	NaN	0.55027	1	7582	7582		7.5404	0.74637	1	3943			22515	6009	13028	13399	17872	17872					0.01970881345687303
RQIRLRRHT	9	Unmodified	_RQIRLRRHT_					0	0	0		ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3814287703001	2	618.381429	1234.7483	1.2822	0.00079289	-1.1468	-0.00070916	0.1354	8.373E-05	618.3808976664874	47.516	0.071869	47.516	47.468	47.54	0	1239	37	0.87444305	0.022093058	0.87444305	354.15677	0	8.947876						101	4	3	NaN	NaN	NaN	0.68845	1	17408	17408		0.19249	0	1	7806.6			22516	7300	13029	13400	17873	17873					0.14032038728078078
RQMMMKFNDI	10	Unmodified	_RQMMMKFNDI_					0	0	0		DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.54361594590006	3	438.543616	1312.60902	1.3015	0.00057076	-4.9825	-0.002185	-3.681	-0.0016143	438.5409836307078	22.139	0.14475	22.139	22.115	22.26	0	1404	40	0.77288127	0.024075806	0.77288127	469.2233	0	14.616638						171	7	4	NaN	NaN	NaN	0.72095	1	18990	18990		6.6174	1.6005	1	24865			22517	262	13030	13401	17874	17874					-0.03478171058122825
RQNERELTRLL	11	Unmodified	_RQNERELTRLL_					0	0	0			REV__ENST00000551538.5_1_14:105963624-105963882:+|nuORF	REV__ENST00000551538.5_1_14:105963624-105963882:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.4075061350501	2	714.407506	1426.80046	0.97551	0.00069691	0.52314	0.00037373	1.4986	0.0010706	714.4091896911519	20.67	0.072302	20.67	20.646	20.718	0	1008	40	1.0156195	0.02373755	1.0156195	410.72165	0	9.599548						102	4	3	NaN	NaN	NaN	0.64343	1	20262	20262		11.17	1.5587	1	11901	+		22518	10960	13031	13402	17875	17875					0.10413112560513582
RQPCPRGR	8	Unmodified	_RQPCPRGR_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.26160206030005	2	485.261602	968.508651	1.5787	0.00076611	2.3063	0.0011191	3.885	0.0018852	485.2629668752309	13.084	0.12007	13.084	13.06	13.18	0	1323	34	0.8228144	0.02031231	0.8228144	334.2576	0	8.251617						88	6	2	NaN	NaN	NaN	0.80071	1	7568	7568		9.1232	0.16122	1	6901.1	+		22519	10899	13032	13403	17876	17876					0.023137207853892505
RQPDYHWLV	9	Unmodified	_RQPDYHWLV_					0	0	0			REV__ENSG00000127578|ENST00000319070|WFIKKN1	REV__ENSG00000127578|ENST00000319070|WFIKKN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.20860692013326	3	405.208607	1212.60399	1.1356	0.00046017	6.9251	0.0028061	8.0607	0.0032663	405.21218546230614	20.261	0.12019	20.261	20.237	20.357	0	1524	40	0.698637	0.024183095	0.698637	424.51242	0	14.694366						116	6	3	NaN	NaN	NaN	0.63698	1	16796	16796		2.1026	0.87363	1	9538.3	+		22520	9439	13033	13404	17877	17877					0.006193524573973264
RQPDYHWLV	9	Unmodified						0	0	0			REV__ENSG00000127578|ENST00000319070|WFIKKN1	REV__ENSG00000127578|ENST00000319070|WFIKKN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	405.208607	1212.60399	1.1356	0.00046017	6.9251	0.0028061	8.0607	0.0032663	405.21218546230614	20.261	0.12019	20.261	20.237	20.357	0	1524	40	0.698637	0.024183095	0.698637	424.51242		14.694366	-0.077133	-0.001252	0.00075972	NaN	2.1026	116	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9538.3	+		22521	9439	13033	13404							0.006193524573973264
RQPDYHWLV	9	Unmodified						0	0	0			REV__ENSG00000127578|ENST00000319070|WFIKKN1	REV__ENSG00000127578|ENST00000319070|WFIKKN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	405.208607	1212.60399	1.2654	0.00051276	9.5119	0.0038543	10.777	0.0043671	405.21268442681173	20.429	0.096413	20.415	20.367	20.463	-0.014141	1524	37	0.698637	0.022321641	0.69711757	424.51242		13.563324	0.077133	0.0018926	-0.00075972	NaN	2.1026	139	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10420	+		22522	9439	13033	13404							0.006193524573973264
RQPEWTGRCY	10	Unmodified	_RQPEWTGRCY_					0	0	0			REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.5365062564001	3	432.536506	1294.58769	1.9277	0.00083381	-7.7949	-0.0033716	-5.8671	-0.0025378	432.86761057090933	16.997	0.023993	16.997	16.997	17.021	0	1509	22	0.70793515	0.013013184	0.70793515	429.85614	0	7.901581						26	2	2	NaN	NaN	NaN	0.76991	1	18669	18669		2.9701	2.0854	1	1683.9	+		22523	12621	13034	13405	17878	17878					-0.04782096770964017
RQPEWTGRCY	10	Unmodified						0	0	0			REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	432.536506	1294.58769	1.9277	0.00083381	-7.7949	-0.0033716	-5.8671	-0.0025378	432.86761057090933	16.997	0.023993	16.997	16.997	17.021	0	1509	22	0.70793515	0.013013184	0.70793515	429.85614		7.901581	-0.12352	-0.00083299	-0.0029577	NaN	2.9701	26	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1683.9	+		22524	12621	13034	13405							-0.04782096770964017
RQPEWTGRCY	10	Unmodified						0	0	0			REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	REV__ENST00000525801.1_1_11:62379321-62379393:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	432.536506	1294.58769	2.2298	0.00096447	-5.6576	-0.0024471	-3.4278	-0.0014826	432.5343127071894	17.258	0.11984	17.244	17.172	17.292	-0.013567	1497	22	0.71537006	0.013008952	0.7138506	434.37057		7.898987	0.12352	0.0019404	0.0029577	NaN	2.9701	50	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866.9	+		22525	12621	13034	13405							-0.04782096770964017
RQPPGPGG	8	Unmodified	_RQPPGPGG_					0	0	0		ENST00000549639.1_2_12:95942409-95942568:-|nuORF	ENST00000549639.1_2_12:95942409-95942568:-|nuORF	ENST00000549639.1_2_12:95942409-95942568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4002124192002	1	765.400212	764.392936	0.25765	0.00019721	6.0854	0.0046578	6.3431	0.004855	765.4038234071688	54.906	0.096054	54.905	54.881	54.977	-0.00061798	492	40	1.3267875	0.023303986	1.325268	270.50623	0	4.751251						65	5	3	NaN	NaN	NaN	0.8439	1	4202	4202		3.1533	0	1	4487			22526	7538	13035	13406	17879	17879					0.001315202061960008
RQPSLFYHL	9	Unmodified	_RQPSLFYHL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant;ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8141903493001	2	580.81419	1159.61383	1.8213	0.0010578	-2.4727	-0.0014362	-0.65142	-0.00037835	580.8125547810913	21.127	0.28903	21.127	21.055	21.344	0	1179	64	0.9112251	0.03858155	0.9112251	369.31805	0	15.637054						499	13	4	NaN	NaN	NaN	0.032826	1	15137	15137		55.413	20.117	1	114800			22527	5701	13036	13407	17880	17880					0.040405404628018005
RQPSLFYHL	9	Unmodified	_RQPSLFYHL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant;ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8141903493001	2	580.81419	1159.61383	1.6278	0.00094545	-1.6963	-0.00098526	-0.068554	-3.9817E-05	580.8131618648778	21.296	0.36109	21.282	21.162	21.523	-0.014006	1182	61	0.9093879	0.03674233	0.90786844	368.57343	0	14.891632						643	16	4	NaN	NaN	NaN	0.13602	1	14629	14629		30.61	7.2757	1	121460			22528	5701	13036	13407	17881	17881					0.040405404628018005
RQPTIELM	8	Unmodified	_RQPTIELM_					0	0	0			REV__nc|ENSG00000232629|P05538-2|HLA-DQB2	REV__nc|ENSG00000232629|P05538-2|HLA-DQB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.26822707415	2	494.268227	986.521901	1.4841	0.00073356	7.3463	0.003631	8.8304	0.0043646	494.27262500344824	24.164	0.0966	24.164	24.116	24.213	0	1299	49	0.8375814	0.029530823	0.8375814	340.1695	0	11.993408						72	5	2	NaN	NaN	NaN	0.84756	1	8105	8105		1.072	0	1	5095.5	+		22529	11319	13037	13408	17882	17882					0.028101140541025416
RQPYIWLTI	9	Unmodified	_RQPYIWLTI_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.34004095905	2	595.340041	1188.66553	1.1118	0.00066191	-0.58363	-0.00034746	0.5282	0.00031446	595.3392661596693	29.546	0.14478	29.546	29.498	29.642	0	1203	37	0.8965218	0.022066832	0.8965218	363.25443	0	8.941101						137	7	3	NaN	NaN	NaN	0.49672	1	16129	16129		9.746	1.5012	1	18075			22530	927	13038	13409	17883	17883					0.07874284156696376
RQQVAAQI	8	Unmodified	_RQQVAAQI_					0	0	0			REV__ENSG00000197417|ENST00000225519|SHPK	REV__ENSG00000197417|ENST00000225519|SHPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.264333327	2	457.264333	912.514114	0.87762	0.0004013	-2.4762	-0.0011323	-1.5985	-0.00073095	457.2630884705895	28.532	0.12066	28.523	28.403	28.523	-0.0083485	1308	172	0.83204526	0.105095625	0.8305259	338.29773	0	42.730377						330	6	2	NaN	NaN	NaN	0.84727	1	6159	6159		1.2418	0	1	47218	+		22531	11147	13039	13410	17884	17884					0.054357228488470355
RQRQEELL	8	Unmodified	_RQRQEELL_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2989044258501	2	536.298904	1070.58326	1.0211	0.00054763	-5.1729	-0.0027742	-4.1518	-0.0022266	536.295935421892	26.504	0.19303	26.494	26.446	26.639	-0.010645	1215	52	0.8891654	0.031276584	0.88764596	360.72934	0	12.688721						204	9	4	NaN	NaN	NaN	0.72013	1	11298	11298		17.799	0	1	30215	+		22532	9814	13040	13411	17885	17885					0.050787620777555276
RQRQEVEKELD	11	Unmodified	_RQRQEVEKELD_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3733289667001	2	715.373329	1428.73211	1.1856	0.00084815	-1.5275	-0.0010928	-0.34194	-0.00024462	715.3695490579423	28.894	0.048273	28.894	28.894	28.943	0	1026	52	1.0046607	0.031058133	1.0046607	406.2846	0	12.5598755						76	3	3	NaN	NaN	NaN	0.71279	1	20270	20270		6.6174	0.18748	1	5246.6			22533	6010	13041	13412	17886	17886					0.034888231900140454
RQRQEVEKELD	11	Unmodified						0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	715.373329	1428.73211	1.1558	0.00082682	-2.748	-0.0019659	-1.5922	-0.001139	715.3707537302976	28.918	0.072426	28.909	28.885	28.958	-0.0083504	1026	43	1.0046607	0.025578558	1.0031413	406.28464		10.343964	0.0075153	-0.00078578	-0.00075972	NaN	6.6174	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7183.7			22534	6010	13041	13412							0.034888231900140454
RQRVPRII	8	Unmodified	_RQRVPRII_					0	0	0			REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.6690574776	1	1037.66906	1036.66178	1.5087	0.0015656	0.82822	0.00085942	2.3369	0.002425	1037.6706211126232	39.885	0.12056	39.891	39.867	39.988	0.0060463	225	46	1.4855686	0.026633143	1.4840492	301.4724	0	5.4047546						89	6	2	NaN	NaN	NaN	0.84727	1	9873	9873		1.2418	0.84618	1	4781	+		22535	8312	13042	13413	17887	17887					0.144916591735182
RQRVPRII	8	Unmodified						0	0	0			REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1037.66906	1036.66178	0.9446	0.00098018	2.0538	0.0021312	2.9984	0.0031114	1037.6708213701868	39.935	0.096252	39.935	39.887	39.983	0	228	43	1.4837929	0.024861455	1.4837929	301.11203		5.045227	0.022082	0.00048922	-0.00012814	NaN	1.2418	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3660.3	+		22536	8312	13042	13413							0.144916591735182
RQRVPRII	8	Unmodified						0	0	0			REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	REV__DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1037.66906	1036.66178	1.5087	0.0015656	0.82822	0.00085942	2.3369	0.002425	1037.6706211126232	39.885	0.12056	39.891	39.867	39.988	0.0060463	225	46	1.4855686	0.026633143	1.4840492	301.4724		5.4047546	-0.022082	-0.00078255	0.00012814	NaN	1.2418	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4781	+		22537	8312	13042	13413							0.144916591735182
RQSKLMYFKN	10	Unmodified	_RQSKLMYFKN_					0	0	0		MYO10|p.E1250K|1|0.22|ENSG00000145555|chr5:16694423-16694423|C/T|missense_variant	MYO10|p.E1250K|1|0.22|ENSG00000145555|chr5:16694423-16694423|C/T|missense_variant	MYO10|p.E1250K|1|0.22|ENSG00000145555|chr5:16694423-16694423|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8529895463	2	657.85299	1313.69143	1.0692	0.0007034	6.8194	0.0044862	7.8886	0.0051896	658.3596415774884	29.062	0.12065	29.055	29.007	29.127	-0.0077209	1215	85	0.8891654	0.05148375	0.88764596	359.88004	0	20.837494						360	6	5	NaN	NaN	NaN	0.77513	1	18169	18169		1.7022	0.90232	1	41486			22538	7889	13043	13414	17888	17888					0.04712810336673101
RQTEVFTLF	9	Unmodified	_RQTEVFTLF_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662001	2	570.806031	1139.59751	0.8287	0.00047303	1.0395	0.00059335	1.8682	0.0010664	570.8071461755501	27.59	0.14476	27.581	27.557	27.702	-0.009552	1212	73	0.8910048	0.044133663	0.88948536	361.19733	0	17.890991						185	7	3	NaN	NaN	NaN	0.2345	1	13972	13972		23.118	2.1651	1	28010			22539	1279	13044	13415	17889	17889					0.0332941450603812
RQTEVFTLF	9	Unmodified						0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.806031	1139.59751	1.5642	0.00089286	1.2251	0.0006993	2.7893	0.0015922	570.8070848109043	27.567	0.072409	27.567	27.543	27.615	0	1212	67	0.8910048	0.040451527	0.8910048	361.19733		16.398315	-0.0068858	8.407E-05	0.00075972	NaN	23.118	187	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24879			22540	1279	13044	13415							0.0332941450603812
RQVLAEEKQRW	11	Unmodified	_RQVLAEEKQRW_					0	0	0			REV__ENST00000479095.1_1_9:4679767-4685161:+|nuORF	REV__ENST00000479095.1_1_9:4679767-4685161:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.89677427325	2	721.896774	1441.779	1.8171	0.0013118	-10.355	-0.0074749	-8.5375	-0.0061632	721.8887125222847	25.588	0.048208	25.588	25.564	25.612	0	1002	49	1.0192708	0.029216886	1.0192708	412.1572	0	11.814331						54	3	2	NaN	NaN	NaN	0.76276	1	20332	20332		3.261	0	1	4130.4	+		22541	9001	13045	13416	17890	17890					0.07577727531770506
RQVWKRPA	8	Unmodified	_RQVWKRPA_					0	0	0		PAPPA2|p.R205P|1|0.24|ENSG00000116183|chr1:176556936-176556936|G/C|missense_variant	PAPPA2|p.R205P|1|0.24|ENSG00000116183|chr1:176556936-176556936|G/C|missense_variant	PAPPA2|p.R205P|1|0.24|ENSG00000116183|chr1:176556936-176556936|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.8092423571501	2	520.809242	1039.60393	1.7973	0.00093604	1.1546	0.00060134	2.9519	0.0015374	520.8104890366749	19.564	0.072001	19.564	19.516	19.588	0	1254	34	0.8652351	0.020261824	0.8652351	351.15378	0	8.223206						47	4	2	NaN	NaN	NaN	0.84692	1	10213	10213		1.4396	0	1	4188.1			22542	8089	13046	13417	17891	17891					0.08571397248078938
RQYGSEGRFTF	11	Unmodified	_RQYGSEGRFTF_					0	0	0		ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;ENSG00000184840|ENST00000332598|TMED9	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.8861924839333	3	449.886192	1346.63675	1.4473	0.00065111	-2.6265	-0.0011816	-1.1792	-0.00053051	449.88527282425053	17.645	0.0959	17.645	17.597	17.693	0	1485	55	0.72280174	0.03342074	0.72280174	438.7042	0	20.284698						75	5	2	NaN	NaN	NaN	0.16151	1	19499	19499		21.576	16.676	1	6072.6			22543	3996	13047	13418	17892	17892					-0.022704852103970552
RRAHPATNW	9	Unmodified	_RRAHPATNW_					0	0	0			REV__ENST00000488527.5_1_7:962627-962927:-|nuORF	REV__ENST00000488527.5_1_7:962627-962927:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7915809202501	2	554.791581	1107.56861	1.387	0.00076951	-1.3649	-0.00075722	0.022149	1.2288E-05	554.7905618231965	22.79	0.12041	22.776	22.752	22.872	-0.01354	1266	103	0.85786515	0.06260389	0.8563457	347.88333	0	25.387268						355	6	3	NaN	NaN	NaN	0.33629	1	12809	12809		16.584	3.1211	1	48161	+		22544	12444	13048	13419	17893	17893					0.019127347202811507
RRAPRRRML	9	Unmodified	_RRAPRRRML_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-3|CARD14	REV__nc|ENSG00000141527|Q9BXL6-3|CARD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1211.7378225198001	1	1211.73782	1210.73055	2.7279	0.0033055	4.1885	0.0050754	6.9164	0.0083809	1211.7433937570552	54.572	0.024075	54.572	54.572	54.596	0	66	61	1.579413	0.035321116	1.579413	319.9109	0	7.1543274						50	2	2	NaN	NaN	NaN	0.68801	1	16743	16743		0.23014	0	1	5039.1	+		22545	9829	13049	13420	17894	17894					0.13361000201575735
RRDEEIPR	8	Unmodified	_RRDEEIPR_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7887038803	2	535.788704	1069.56285	0.6279	0.00033642	2.0302	0.0010878	2.6581	0.0014242	535.790071146101	20.911	0.14447	20.897	20.849	20.993	-0.014086	1236	52	0.876284	0.03129685	0.8747646	355.50772	0	12.697113						167	7	3	NaN	NaN	NaN	0.7718	1	11264	11264		13.003	0.95414	1	21712	+		22546	9298	13050	13421	17895	17895					0.030855914179255706
RRDEEIPR	8	Unmodified						0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.788704	1069.56285	1.6163	0.000866	-0.03678	-1.9706E-05	1.5795	0.00084629	535.7898411605289	20.911	0.096344	20.911	20.862	20.959	0	1236	58	0.876284	0.034978867	0.876284	355.50772		14.190887	0.0069701	-0.0015531	0.00075972	NaN	13.003	173	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23103	+		22547	9298	13050	13421							0.030855914179255706
RRDEEIPR	8	Unmodified						0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.788704	1069.56285	0.6279	0.00033642	2.0302	0.0010878	2.6581	0.0014242	535.790071146101	20.911	0.14447	20.897	20.849	20.993	-0.014086	1236	52	0.876284	0.03129685	0.8747646	355.50772		12.697113	-0.0069701	0.00066185	-0.00075972	NaN	13.003	167	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21712	+		22548	9298	13050	13421							0.030855914179255706
RREDKERRH	9	Unmodified	_RREDKERRH_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.9009474343334	3	427.900947	1280.68101	1.3995	0.00059885	-6.0447	-0.0025865	-4.6452	-0.0019877	427.89921058318157	20.838	0.024126	20.838	20.838	20.862	0	1425	31	0.7599118	0.01853484	0.7599118	461.469	0	11.255615						31	2	2	NaN	NaN	NaN	0.65262	1	18433	18433		3.261	0.2245	1	2326.2			22549	74	13051	13422	17896	17896					0.05189963726456881
RREPGGRL	8	Unmodified	_RREPGGRL_					0	0	0		ENST00000486685.2_1_7:128808116-128808251:+|nuORF	ENST00000486685.2_1_7:128808116-128808251:+|nuORF	ENST00000486685.2_1_7:128808116-128808251:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.77539953980005	2	470.7754	939.536246	1.479	0.00069629	-6.6893	-0.0031492	-5.2103	-0.0024529	470.7720764165065	56.948	0.12	56.948	56.852	56.972	0	1344	31	0.8098828	0.018478692	0.8098828	329.14633	0	7.5099792						56	6	2	NaN	NaN	NaN	0.84512	1	6817	6817		2.4615	0	1	3305			22550	7240	13052	13423	17897	17897					0.06405947317284699
RREPGGRL	8	Unmodified						0	0	0		ENST00000486685.2_1_7:128808116-128808251:+|nuORF	ENST00000486685.2_1_7:128808116-128808251:+|nuORF	ENST00000486685.2_1_7:128808116-128808251:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	470.7754	939.536246	0.60528	0.00028495	-8.0206	-0.0037759	-7.4153	-0.0034909	470.7728199814698	57.211	0.024059	57.21	57.186	57.21	-0.00053787	1353	22	0.8043377	0.012940049	0.80281824	326.89273		5.2590027	0.13092	-0.00076344	-0.0035323	NaN	2.4615	21	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081.3			22551	7240	13052	13423							0.06405947317284699
RRFQQLVQPAG	11	Unmodified	_RRFQQLVQPAG_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.3676526930501	2	650.367653	1298.72075	0.96426	0.00062712	4.9487	0.0032185	5.913	0.0038456	650.3710138180592	29.062	0.096523	29.055	29.031	29.127	-0.0077209	1224	49	0.883646	0.029435158	0.88212657	357.68903	0	11.914978						129	5	4	NaN	NaN	NaN	0.77278	1	17931	17931		1.5054	0	1	13426			22552	5571	13053	13424	17898	17898					0.08334090677180939
RRFQQLVQPAG	11	Unmodified						0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	650.367653	1298.72075	1.3569	0.0008825	6.8064	0.0044267	8.1633	0.0053092	650.3720802419363	29.039	0.096535	29.039	29.015	29.112	0	1227	40	0.88180584	0.02391994	0.88180584	356.94415		9.682495	-0.0077898	0.00085923	-0.00016038	NaN	1.5054	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11088			22553	5571	13053	13424							0.08334090677180939
RRFTDLIWKN	10	Unmodified	_RRFTDLIWKN_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.8778532386001	2	674.877853	1347.74115	1.3899	0.00093802	-7.0393	-0.0047506	-5.6494	-0.0038126	675.3733033325009	45.694	0.072124	45.694	45.67	45.742	0	1173	25	0.91489893	0.014693737	0.91489893	370.19806	0	5.945587						48	4	2	NaN	NaN	NaN	0.74182	1	19518	19518		5.1889	1.6191	1	2990.7			22554	1872	13054	13425	17899	17899					0.08119261336992167
RRGPLLDRVT	10	Unmodified	_RRGPLLDRVT_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.90703937636664	3	394.907039	1181.69929	1.1017	0.00043507	7.0209	0.0027726	8.1226	0.0032077	395.24422588357044	39.668	0.096386	39.673	39.649	39.746	0.0053368	1431	55	0.75620437	0.033370078	0.7546849	459.62708	0	20.282562						130	5	4	NaN	NaN	NaN	0.77514	1	15298	15298		1.6985	0.17289	1	19833	+		22555	10256	13055	13426	17900	17900					0.1157070564845526
RRGPLLDRVT	10	Unmodified						0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	394.907039	1181.69929	0.45259	0.00017873	5.6811	0.0022435	6.1337	0.0024223	395.24343490719343	39.694	0.048061	39.694	39.67	39.718	0	1431	49	0.75620437	0.029662251	0.75620437	459.62708		18.028961	0.010428	-0.0010991	0.00075972	NaN	1.6985	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13845	+		22556	10256	13055	13426							0.1157070564845526
RRGPLLDRVT	10	Unmodified						0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	394.907039	1181.69929	1.1017	0.00043507	7.0209	0.0027726	8.1226	0.0032077	395.24422588357044	39.668	0.096386	39.673	39.649	39.746	0.0053368	1431	55	0.75620437	0.033370078	0.7546849	459.62708		20.282562	-0.010428	0.00048819	-0.00075972	NaN	1.6985	130	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19833	+		22557	10256	13055	13426							0.1157070564845526
RRGPWRFQ	8	Unmodified	_RRGPWRFQ_					0	0	0		ENST00000568205.1_1_16:89616945-89619626:+|nuORF	ENST00000568205.1_1_16:89616945-89619626:+|nuORF	ENST00000568205.1_1_16:89616945-89619626:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	368.2054197090334	3	368.20542	1101.59443	2.0086	0.00073957	-0.73351	-0.00027008	1.2751	0.00046949	368.20473445877917	19.587	0.096317	19.573	19.549	19.645	-0.014141	1473	43	0.7302302	0.025996745	0.7287108	444.21136	0	15.81427						76	5	2	NaN	NaN	NaN	0.84692	1	12580	12580		0.79988	0	1	5754.7			22558	7636	13056	13427	17901	17901					0.047696289625719146
RRGRTVAW	8	Unmodified	_RRGRTVAW_					0	0	0			REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.29121677949996	2	501.291217	1000.56788	1.0226	0.00051263	-1.2141	-0.00060862	-0.19148	-9.5988E-05	501.29071694706124	28.894	0.33784	28.885	28.716	29.054	-0.0083485	1233	91	0.87812483	0.0552029	0.8766054	356.5667	0	22.415375						473	15	3	NaN	NaN	NaN	0.84876	1	8459	8459		0.39566	0	1	59886	+		22559	9084	13057	13428	17902	17902					0.06761940071214667
RRGRTVAW	8	Unmodified						0	0	0			REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.291217	1000.56788	2.0141	0.0010096	0.29575	0.00014826	2.3098	0.0011579	501.29122745667735	28.725	0.0483	28.725	28.701	28.75	0	1248	22	0.8689189	0.012891054	0.8689189	352.82858		5.234497	-0.079904	0.0014002	-0.0038433	NaN	0.39566	31	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1650.6	+		22560	9084	13057	13428							0.06761940071214667
RRGRTVAW	8	Unmodified						0	0	0			REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	REV__nc|ENSG00000110811|Q8IVL6-2|P3H3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.291217	1000.56788	1.0226	0.00051263	-1.2141	-0.00060862	-0.19148	-9.5988E-05	501.29071694706124	28.894	0.33784	28.885	28.716	29.054	-0.0083485	1233	91	0.87812483	0.0552029	0.8766054	356.5667		22.415375	0.079904	-0.00011357	0.0038433	NaN	0.39566	473	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59886	+		22561	9084	13057	13428							0.06761940071214667
RRGTFTLG	8	Unmodified	_RRGTFTLG_					0	0	0		ENST00000528409.1_1_11:65634504-65635429:-|nuORF	ENST00000528409.1_1_11:65634504-65635429:-|nuORF	ENST00000528409.1_1_11:65634504-65635429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	907.5108255011003	1	907.510826	906.503549	0.15128	0.00013729	6.1134	0.005548	6.2646	0.0056852	907.5158473115252	53.264	0.11996	53.264	53.216	53.336	-0.00053787	186	46	1.5086359	0.026599169	1.5071164	306.7301	0	5.4080505						148	6	3	NaN	NaN	NaN	0.82332	1	6065	6065		6.0903	0	1	12748			22562	7437	13058	13429	17903	17903					0.0465574019443693
RRHAQLPP	8	Unmodified	_RRHAQLPP_					0	0	0		ENST00000472176.1_1_6:44197340-44197857:+|nuORF	ENST00000472176.1_1_6:44197340-44197857:+|nuORF	ENST00000472176.1_1_6:44197340-44197857:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.78576726085004	2	487.785767	973.556982	1.108	0.00054044	7.9764	0.0038908	9.0844	0.0044312	487.7896472230019	28.218	0.16895	28.209	28.161	28.33	-0.0089779	1293	64	0.84127116	0.038723588	0.8397517	341.73056	0	15.729797						168	8	2	NaN	NaN	NaN	0.83211	1	7567	7567		4.9097	0.94122	1	12935			22563	7160	13059	13430	17904	17904					0.069145376969459
RRHEHHYVH	9	Unmodified	_RRHEHHYVH_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.8186613380001	2	635.818661	1269.62277	2.0137	0.0012804	-9.3817	-0.0059651	-7.368	-0.0046847	636.3147585522618	23.417	0.19292	23.417	23.369	23.562	0	1149	64	0.92958635	0.0385316	0.92958635	376.37592	0	15.600861						320	9	3	NaN	NaN	NaN	0.67818	1	18227	18227		1.072	0.14616	1	36009			22564	3235	13060	13431	17905	17905					-0.0012567312815008336
RRHIHIRWRKP	11	Unmodified	_RRHIHIRWRKP_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.97127662035	2	777.971277	1553.928	-0.14678	-0.00011419	0.09743	7.5798E-05	-0.049349	-3.8392E-05	778.4734977313689	53.802	0.072308	53.801	53.777	53.849	-0.00059128	711	52	1.1954219	0.030723095	1.1939025	483.05475	0	12.414795						148	4	3	NaN	NaN	NaN	0.78138	1	19678	19678		0	0	1	11660			22565	8009	13061	13432	17906	17906					0.17319342735845566
RRHKRRRILKE	11	Unmodified	_RRHKRRRILKE_					0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1547.9829552482	1	1547.98296	1546.97568	1.7098	0.0026467	0.46788	0.00072427	2.1777	0.003371	1548.985319960462	39.622	0.048019	39.622	39.598	39.646	0	351	85	1.4108255	0.04995072	1.4108255	285.06125	0	10.092682						116	3	2	NaN	NaN	NaN	0.78084	1	20693	20693		0.094767	0	1	10011	+		22566	10741	13062	13433	17907	17907					0.22406996936047108
RRHKRRRILKE	11	Unmodified						0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1547.98296	1546.97568	1.7098	0.0026467	0.46788	0.00072427	2.1777	0.003371	1548.985319960462	39.622	0.048019	39.622	39.598	39.646	0	351	85	1.4108255	0.04995072	1.4108255	285.06125		10.092682	-0.0015533	0.0013597	-0.003698	NaN	0.094767	116	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10011	+		22567	10741	13062	13433							0.22406996936047108
RRHKRRRILKE	11	Unmodified						0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1547.98296	1546.97568	1.481	0.0022926	-0.98722	-0.0015282	0.49379	0.00076438	1548.983187620971	39.62	0.12015	39.625	39.505	39.625	0.0053368	336	85	1.419741	0.04995072	1.4182216	286.86267		10.092682	0.0015533	-0.0008928	0.003698	NaN	0.094767	245	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17330	+		22568	10741	13062	13433							0.22406996936047108
RRHRGRRS	8	Unmodified	_RRHRGRRS_					0	0	0			REV__ENST00000459656.5_1_2:201171456-201254069:+|nuORF	REV__ENST00000459656.5_1_2:201171456-201254069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.8834510741667	3	360.883451	1079.62852	1.5496	0.00055922	4.2597	0.0015373	5.8093	0.0020965	360.8849632243821	14.789	0.31221	14.789	14.669	14.981	0	1500	46	0.71351165	0.027876318	0.71351165	434.15005	0	16.961914						317	14	3	NaN	NaN	NaN	0.74229	1	11980	11980		16.584	1.1215	1	69573	+		22569	12258	13063	13434	17908	17908					0.09189470174169401
RRHRGRRS	8	Unmodified						0	0	0			REV__ENST00000459656.5_1_2:201171456-201254069:+|nuORF	REV__ENST00000459656.5_1_2:201171456-201254069:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	360.883451	1079.62852	1.5496	0.00055922	4.2597	0.0015373	5.8093	0.0020965	360.8849632243821	14.789	0.31221	14.789	14.669	14.981	0	1500	46	0.71351165	0.027876318	0.71351165	434.15005		16.961914	0	0	0	NaN	16.584	317	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69573	+		22570	12258	13063	13434							0.09189470174169401
RRHYEEQMRRE	11	Unmodified	_RRHYEEQMRRE_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.3893217694	2	795.389322	1588.76409	1.2114	0.00096351	-1.3883	-0.0011043	-0.17696	-0.00014076	795.3882774222462	31.477	0.14482	31.477	31.428	31.573	0	942	94	1.055741	0.056519628	1.055741	426.52884	0	22.834442						372	7	5	NaN	NaN	NaN	0.72342	1	20735	20735		5.9198	2.7082	1	60565			22571	3840	13064	13435	17909	17909					-0.006740876078765723
RRHYEEQMRRE	11	Unmodified						0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	795.389322	1588.76409	1.0339	0.00082233	-1.2588	-0.0010012	-0.22491	-0.00017889	795.3888263716948	31.476	0.14482	31.471	31.423	31.568	-0.0044155	942	94	1.055741	0.056513548	1.0542215	426.52884		22.83197	-0.002738	0.00012044	-0.00075972	NaN	5.9198	355	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59888			22572	3840	13064	13435							-0.006740876078765723
RRIEMEDPC	9	Unmodified	_RRIEMEDPC_					0	0	0		nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1;ENSG00000135426|ENST00000449076|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	nc|ENSG00000135426|A2RU30-2|TESPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7629829082501	2	574.762983	1147.51141	1.6708	0.00096031	2.131	0.0012248	3.8018	0.0021851	574.7640357333037	11.98	0.11997	11.98	11.932	12.052	0	1269	46	0.8560222	0.027641773	0.8560222	346.9874	0	11.204529						86	6	2	NaN	NaN	NaN	0.60102	1	14705	14705		5.6942	0.50528	1	6257.4			22573	2941	13065	13436	17910	17910					-0.05644236662601543
RRKAWAFA	8	Unmodified	_RRKAWAFA_					0	0	0		ENST00000399000.7_1_21:38639746-38639863:-|nuORF	ENST00000399000.7_1_21:38639746-38639863:-|nuORF	ENST00000399000.7_1_21:38639746-38639863:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.29068546325	2	503.290685	1004.56682	1.4211	0.00071524	1.5078	0.00075886	2.9289	0.0014741	503.2912621447333	21.055	0.048166	21.055	21.031	21.079	0	1422	46	0.7617651	0.027806818	0.7617651	309.3016	0	11.290497						61	3	2	NaN	NaN	NaN	0.84876	1	8778	8778		0.39566	0.065779	1	5817.4			22574	6818	13066	13437	17911	17911					0.0647172570230623
RRKAWAFA	8	Unmodified						0	0	0		ENST00000399000.7_1_21:38639746-38639863:-|nuORF	ENST00000399000.7_1_21:38639746-38639863:-|nuORF	ENST00000399000.7_1_21:38639746-38639863:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	503.290685	1004.56682	1.5956	0.00080306	1.0949	0.00055103	2.6905	0.0013541	503.2909177086286	21.272	0.12041	21.258	21.162	21.282	-0.014004	1419	31	0.76361835	0.018532872	0.7620989	310.05405		7.5249634	0.10148	-0.00021025	0.00016687	NaN	0.39566	68	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4361.5			22575	6818	13066	13437							0.0647172570230623
RRKEIVKHSV	10	Unmodified	_RRKEIVKHSV_					0	0	0			REV__nc|ENSG00000187821|A6NFD8-4|HELT	REV__nc|ENSG00000187821|A6NFD8-4|HELT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3858454462	2	626.385845	1250.75714	1.0492	0.00065722	1.3321	0.00083442	2.3813	0.0014916	626.3868072207262	41.426	0.096348	41.426	41.426	41.522	0	1218	82	0.8873258	0.049706757	0.8873258	359.32352	0	20.128815						239	5	2	NaN	NaN	NaN	0.77513	1	17793	17793		1.7022	0.77633	1	50918	+		22576	11036	13067	13438	17912	17912					0.14178967573889167
RRKRERAERDS	11	Unmodified	_RRKRERAERDS_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0|TMEM44	REV__nc|ENSG00000145014|Q2T9K0|TMEM44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.9380612221333	3	486.938061	1457.79235	1.8719	0.00091151	1.3526	0.00065866	3.2246	0.0015702	486.93888929168594	19.588	0.048004	19.588	19.564	19.612	0	1344	34	0.8098828	0.020329893	0.8098828	491.17755	0	12.329681						80	3	3	NaN	NaN	NaN	0.74438	1	20416	20416		4.5433	2.5075	1	14815	+		22577	13135	13068	13439	17913	17913					0.08176978363735543
RRKRKKYVI	9	Unmodified	_RRKRKKYVI_					0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1246.8218697252	1	1246.82187	1245.81459	1.8764	0.0023395	2.5926	0.0032325	4.469	0.005572	1246.8262858200642	39.694	0.096428	39.694	39.694	39.791	0	66	73	1.579413	0.0423764	1.579413	319.80917	0	8.580627						349	5	5	NaN	NaN	NaN	0.67818	1	17666	17666		1.072	0.84188	1	65120			22578	13897	13069	13440	17914	17914					0.2015185457012194
RRKRKKYVI	9	Unmodified	_RRKRKKYVI_					0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1246.8218697252	1	1246.82187	1245.81459	1.9634	0.002448	5.6571	0.0070533	7.6205	0.0095014	1246.8297970044391	40.2	0.096333	40.2	40.2	40.296	0	66	40	1.579413	0.022952676	1.579413	319.80917	0	4.647583						52	5	2	NaN	NaN	NaN	0.68801	1	17669	17669		0.23014	0	1	3195.8			22579	13897	13069	13440	17915	17915					0.2015185457012194
RRKRKKYVI	9	Unmodified	_RRKRKKYVI_					0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8218697252	1	1246.82187	1245.81459	1.4093	0.0017571	3.8466	0.004796	5.2559	0.0065532	1246.8276363456494	39.861	0.096397	39.867	39.843	39.939	0.0060463	63	52	1.5811787	0.030011892	1.5796592	320.1667	0	6.0769653						191	5	3	NaN	NaN	NaN	0.68801	1	16929	16929		0.23014	0	1	19534			22580	13897	13069	13440	17916	17916					0.2015185457012194
RRKRKKYVI	9	Unmodified	_RRKRKKYVI_					0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8218697252	1	1246.82187	1245.81459	1.4213	0.0017721	4.1373	0.0051585	5.5587	0.0069306	1247.8318363145972	41.568	0.096161	41.577	41.529	41.625	0.0082588	66	37	1.579413	0.021185994	1.5778936	319.80917	0	4.2898865						98	5	3	NaN	NaN	NaN	0.68801	1	16930	16930		0.23014	0	1	5581.1			22581	13897	13069	13440	17917	17917					0.2015185457012194
RRKRKKYVI	9	Unmodified						0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1246.82187	1245.81459	2.1869	0.0027267	1.9588	0.0024422	4.1457	0.0051689	1246.8241794940434	40.198	0.14419	40.204	40.204	40.348	0.0060501	63	31	1.5811787	0.017655015	1.5796592	320.1667		3.5748596	0.0021302	-0.00202	0.00012308	NaN	0.23014	58	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2898.3			22582	13897	13069	13440							0.2015185457012194
RRKRRWKR	8	Unmodified	_RRKRRWKR_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1241.7926352823	1	1241.79264	1240.78536	1.5339	0.0019047	-8.4756	-0.010525	-6.9417	-0.0086202	1241.7829583652797	39.957	0.04821	39.963	39.963	40.012	0.0060501	654	88	1.2297117	0.052269936	1.2281922	249.01062	0	10.584396						131	3	2	NaN	NaN	NaN	0.84692	1	16808	16808		1.4396	0	1	8873.5	+		22583	12748	13070	13441	17918	17918					0.17459755064464844
RRKRTKKRT	9	Unmodified	_RRKRTKKRT_					0	0	0			REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF	REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312666	1	1229.80253	1228.79525	1.9159	0.0023562	-3.4009	-0.0041824	-1.4849	-0.0018262	1229.79824659393	41.281	0.024044	41.281	41.257	41.281	0	57	76	1.5847093	0.044139743	1.5847093	320.9304	0	8.939056						114	2	3	NaN	NaN	NaN	0.67818	1	17227	17227		1.072	0	1	18454	+		22584	11848	13071	13442	17919	17919					0.19000898279205103
RRKRTKKRT	9	Unmodified						0	0	0			REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF	REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1229.80253	1228.79525	1.9159	0.0023562	-3.4009	-0.0041824	-1.4849	-0.0018262	1229.79824659393	41.281	0.024044	41.281	41.257	41.281	0	57	76	1.5847093	0.044139743	1.5847093	320.9304		8.939056	-0.027447	-0.0025595	-0.0001228	NaN	1.072	114	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18454	+		22585	11848	13071	13442							0.19000898279205103
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3853225174502	2	637.385323	1272.75609	1.1447	0.0007296	-3.1509	-0.0020083	-2.0062	-0.0012787	637.3826998867249	41.594	0.21655	41.594	41.45	41.666	0	1200	43	0.89836043	0.025739074	0.89836043	363.72336	0	10.421082						239	10	4	NaN	NaN	NaN	0.76892	1	18283	18283		3.2116	0	1	27628			22586	6951	13072	13443	17920	17920					0.1306242993334763
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3853225174502	2	637.385323	1272.75609	0.96815	0.00061708	-2.2386	-0.0014269	-1.2705	-0.0008098	637.3837618495699	40.464	0.096184	40.464	40.44	40.537	0	1203	67	0.8965218	0.040447116	0.8965218	362.97894	0	16.376038						105	5	2	NaN	NaN	NaN	0.76892	1	18284	18284		3.2116	0	1	13995			22587	6951	13072	13443	17921	17921					0.1306242993334763
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3853225174502	2	637.385323	1272.75609	1.9275	0.0012285	-3.6677	-0.0023377	-1.7402	-0.0011092	637.3832431889346	42.193	0.048012	42.202	42.202	42.25	0.0089989	1203	52	0.8965218	0.031249523	0.89500237	362.97894	0	12.65213						44	3	2	NaN	NaN	NaN	0.76892	1	17470	17470		3.2116	0	1	2574.3			22588	6951	13072	13443	17922	17922					0.1306242993334763
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3853225174502	2	637.385323	1272.75609	1.1802	0.00075226	-2.4406	-0.0015556	-1.2603	-0.00080331	637.3840666634427	41.881	0.072048	41.89	41.89	41.962	0.0089989	1203	46	0.8965218	0.02757907	0.89500237	362.97894	0	11.166046						76	4	2	NaN	NaN	NaN	0.76892	1	17471	17471		3.2116	0	1	8449			22589	6951	13072	13443	17923	17923					0.1306242993334763
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3853225174502	2	637.385323	1272.75609	1.1577	0.00073787	-1.6857	-0.0010744	-0.52806	-0.00033658	637.3846226749823	41.159	0.19268	41.167	41.143	41.335	0.0074959	1197	49	0.9001988	0.029416084	0.8986794	364.46765	0	11.909851						155	9	2	NaN	NaN	NaN	0.76892	1	17472	17472		3.2116	0	1	21801			22590	6951	13072	13443	17924	17924					0.1306242993334763
RRKSMKKPRS	10	Unmodified	_RRKSMKKPRS_					0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3853225174502	2	637.385323	1272.75609	1.0431	0.00066485	-1.3187	-0.00084054	-0.27564	-0.00017569	637.3839843169068	41.737	0.14439	41.745	41.697	41.841	0.0082588	1200	43	0.89836043	0.025739074	0.896841	363.72333	0	10.421082						161	7	2	NaN	NaN	NaN	0.76892	1	17473	17473		3.2116	0	1	26087			22591	6951	13072	13443	17925	17925					0.1306242993334763
RRKSMKKPRS	10	Unmodified						0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.385323	1272.75609	1.1418	0.00072776	-2.2412	-0.0014285	-1.0994	-0.00070075	637.383486684526	41.931	0.096085	41.931	41.883	41.979	0	1206	70	0.894683	0.042278767	0.894683	362.23447		17.117615	-0.13556	0.00072997	-0.00015968	NaN	3.2116	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9426.8			22592	6951	13072	13443							0.1306242993334763
RRKSMKKPRS	10	Unmodified						0	0	0		ENST00000428623.5_1_2:145277196-145277833:+|nuORF;ENST00000609376.5_2_2:145276374-145277833:+|nuORF;ENST00000427278.7_1_2:145276031-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	ENST00000428623.5_1_2:145277196-145277833:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.385323	1272.75609	1.1362	0.00072417	-2.6727	-0.0017036	-1.5366	-0.0009794	637.8855126862414	41.209	0.24051	41.209	41.089	41.329	0	1200	43	0.89836043	0.025739074	0.89836043	363.72336		10.421082	0.021157	-0.00049792	-0.00015948	NaN	3.2116	308	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37536			22593	6951	13072	13443							0.1306242993334763
RRLGYDVLI	9	Unmodified	_RRLGYDVLI_					0	0	0			REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	REV__ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.8298404135	2	552.82984	1103.64513	1.1094	0.00061331	-7.0792	-0.0039136	-5.9698	-0.0033003	552.8258805796515	30.896	0.2655	30.891	30.794	31.06	-0.0057545	1200	46	0.89836043	0.027576089	0.896841	364.32098	0	11.183197						214	12	2	NaN	NaN	NaN	0.49672	1	12659	12659		9.746	0	1	37505	+		22594	8118	13073	13444	17926	17926					0.09745113496887825
RRLSWSLALPA	11	Unmodified	_RRLSWSLALPA_					0	0	0			REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3749464089001	2	635.374946	1268.73534	1.0305	0.00065477	3.2959	0.0020941	4.3264	0.0027489	635.3778491519496	39.382	0.19225	39.382	39.334	39.526	0	1251	67	0.8670771	0.04050839	0.8670771	351.06946	0	16.401367						380	9	3	NaN	NaN	NaN	0.77466	1	18214	18214		1.1768	0.1048	1	105180	+		22595	12509	13074	13445	17927	17927					0.1117216282532354
RRMLTDKEREM	11	Unmodified	_RRMLTDKEREM_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.91851035979994	3	488.91851	1463.7337	1.7412	0.0008513	1.0131	0.00049531	2.7543	0.0013466	488.9196504429502	17.522	0.14399	17.508	17.46	17.604	-0.013567	1338	31	0.81357855	0.018476725	0.8120591	493.40015	0	11.205353						90	7	2	NaN	NaN	NaN	0.77466	1	19464	19464		0.33451	0	1	7833			22596	1910	13075	13446	17928	17928					0.020384176827292322
RRNEGEEASY	10	Unmodified	_RRNEGEEASY_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.77599043555	2	605.77599	1209.53743	1.437	0.00087051	-6.0414	-0.0036597	-4.6044	-0.0027892	605.7719523259949	19.084	0.14393	19.084	19.036	19.18	0	1182	46	0.9093879	0.027564168	0.9093879	368.3946	0	11.16629						125	7	3	NaN	NaN	NaN	0.76025	1	16712	16712		3.9281	0.7165	1	11665	+		22597	9885	13076	13447	17929	17929					-0.05895927895130626
RRNLEKII	8	Unmodified	_RRNLEKII_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.6527387114002	1	1041.65274	1040.64546	1.1114	0.0011577	-7.3694	-0.0076763	-6.258	-0.0065186	1042.6512941627634	40.198	0.16825	40.204	40.156	40.324	0.0060501	255	61	1.4678029	0.035542846	1.4662834	297.8522	0	7.2124634						178	8	2	NaN	NaN	NaN	0.84455	1	10043	10043		2.7852	0	1	13629	+		22598	10333	13077	13448	17930	17930					0.12676533216767893
RRNQDRPQLTK	11	Unmodified	_RRNQDRPQLTK_					0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.2674073321999	3	471.267407	1410.78039	1.5563	0.00073343	3.8316	0.0018057	5.388	0.0025392	471.26851731094536	15.126	0.048054	15.126	15.126	15.174	0	1407	22	0.77102906	0.012966692	0.77102906	467.7598	0	7.8664856						30	3	2	NaN	NaN	NaN	0.77633	1	20155	20155		0.88464	0.092838	1	1917.1			22599	1063	13078	13449	17931	17931					0.09143361620544965
RRNQDRPQLTK	11	Unmodified						0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	471.267407	1410.78039	1.7294	0.00081503	4.4043	0.0020756	6.1338	0.0028906	471.26951160137264	15.436	0.071973	15.424	15.4	15.472	-0.012202	1407	28	0.77102906	0.016671479	0.7695096	467.7598		10.114044	0.14917	0.00043068	-0.00075972	NaN	0.88464	32	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2015.6			22600	1063	13078	13449							0.09143361620544965
RRNTIVLVA	9	Unmodified	_RRNTIVLVA_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.6527387114	1	1041.65274	1040.64546	0.82676	0.0008612	-8.1816	-0.0085224	-7.3549	-0.0076612	1041.6431410479545	40.224	0.12037	40.224	40.176	40.296	0	258	61	1.4660252	0.035542846	1.4660252	297.4915	0	7.212494						127	6	2	NaN	NaN	NaN	0.65818	1	10255	10255		2.7852	0.60885	1	11136	+		22601	10917	13079	13450	17932	17932					0.12676533216745156
RRNTIVLVA	9	Unmodified						0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1041.65274	1040.64546	0.82676	0.0008612	-8.1816	-0.0085224	-7.3549	-0.0076612	1041.6431410479545	40.224	0.12037	40.224	40.176	40.296	0	258	61	1.4660252	0.035542846	1.4660252	297.4915		7.212494	0.0098978	-0.00035387	-0.00012909	NaN	2.7852	127	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11136	+		22602	10917	13079	13450							0.12676533216745156
RRNTIVLVA	9	Unmodified						0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1041.65274	1040.64546	1.1114	0.0011577	-7.3694	-0.0076763	-6.258	-0.0065186	1042.6512941627634	40.198	0.16825	40.204	40.156	40.324	0.0060501	255	61	1.4678029	0.035542846	1.4662834	297.8522		7.2124634	-0.0098978	0.00049226	0.00012909	NaN	2.7852	178	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13629	+		22603	10917	13079	13450							0.12676533216745156
RRPERNYQH	9	Unmodified	_RRPERNYQH_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.2182764926333	3	419.218276	1254.633	2.0686	0.00086719	-0.18532	-7.7688E-05	1.8833	0.0007895	419.21879610560075	15.844	0.047916	15.831	15.783	15.831	-0.012611	1443	61	0.7487872	0.037089884	0.7472678	454.81393	0	22.528442						62	3	2	NaN	NaN	NaN	0.66196	1	17127	17127		1.1768	0.54509	1	5372.1			22604	687	13080	13451	17933	17933					0.01586889806412728
RRPGPGMCG	9	Unmodified	_RRPGPGMCG_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4396511679003	1	930.439651	929.432375	1.832	0.0017046	-1.5756	-0.001466	0.25642	0.00023858	930.438440012538	32.297	0.36197	32.297	32.152	32.514	0	1275	97	0.85233563	0.058959544	0.85233563	173.2297	0	11.983002						930	16	4	NaN	NaN	NaN	0.6907	1	6579	6579		0	0	1	179220			22605	2851	13081	13452	17934	17934					-0.0351641910623357
RRPGPGMCG	9	Unmodified						0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.439651	929.432375	1.0053	0.0009354	-1.4165	-0.001318	-0.41121	-0.0003826	930.4386808909112	32.272	0.38617	32.268	32.148	32.534	-0.0037613	1272	100	0.854179	0.060792148	0.8526596	173.60435		12.355469	-0.014485	6.134E-05	0.00016197	NaN	0	957	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175910			22606	2851	13081	13452							-0.0351641910623357
RRPRASVLS	9	Unmodified	_RRPRASVLS_					0	0	0			REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.6275865934	1	1041.62759	1040.62031	-0.19493	-0.00020304	1.9592	0.0020408	1.7643	0.0018377	1041.6296151830436	53.552	0.047897	53.552	53.528	53.576	-0.00053787	180	49	1.5121819	0.028365016	1.5106624	306.85782	0	5.7559204						77	3	3	NaN	NaN	NaN	0.63698	1	10041	10041		3.9685	0.39873	1	7153.3	+		22607	12287	13082	13453	17935	17935					0.10162478414190446
RRPRASVLS	9	Unmodified						0	0	0			REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1041.62759	1040.62031	1.6905	0.0017609	2.5296	0.0026349	4.2202	0.0043958	1041.6305653765303	53.554	0.047909	53.554	53.53	53.578	0	183	40	1.510409	0.023050189	1.510409	306.49805		4.677429	0.0011006	0.00024525	-0.00012673	NaN	3.9685	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7192.9	+		22608	12287	13082	13453							0.10162478414190446
RRPRASVLS	9	Unmodified						0	0	0			REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1041.62759	1040.62031	-0.19493	-0.00020304	1.9592	0.0020408	1.7643	0.0018377	1041.6296151830436	53.552	0.047897	53.552	53.528	53.576	-0.00053787	180	49	1.5121819	0.028365016	1.5106624	306.85782		5.7559204	-0.0011006	-0.0003489	0.00012673	NaN	3.9685	77	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7153.3	+		22609	12287	13082	13453							0.10162478414190446
RRPWRLKRRWN	11	Unmodified	_RRPWRLKRRWN_					0	0	0		ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4820084821501	2	812.482008	1622.94946	2.0487	0.0016645	-0.1502	-0.00012204	1.8985	0.0015425	812.4824501394128	54.524	0.072334	54.524	54.5	54.572	0	867	46	1.1012185	0.027254224	1.1012185	444.82117	0	11.009003						113	4	3	NaN	NaN	NaN	0.78138	1	20773	20773		0	0	1	15182			22610	7329	13083	13454	17936	17936					0.16290727764589974
RRPWRLKRRWN	11	Unmodified	_RRPWRLKRRWN_					0	0	0		ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.4820084821501	2	812.482008	1622.94946	-0.18887	-0.00015346	1.7298	0.0014054	1.5409	0.001252	812.4828470492241	54.522	0.09642	54.521	54.497	54.593	-0.0006218	624	40	1.247731	0.023413777	1.2462115	504.00275	0	9.457642						169	5	4	NaN	NaN	NaN	0.78138	1	19745	19745		0	0	1	17262			22611	7329	13083	13454	17937	17937					0.16290727764589974
RRQDKVVVN	9	Unmodified	_RRQDKVVVN_					0	0	0			REV__CON__A2I7N1	REV__CON__A2I7N1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	371.8877562997334	3	371.887756	1112.64144	1.8457	0.00068637	-1.5605	-0.00058033	0.28515	0.00010604	371.8873240519385	15.654	0.072074	15.654	15.63	15.702	0	1530	25	0.6949163	0.014884353	0.6949163	422.67758	0	9.053314						40	4	2	NaN	NaN	NaN	0.68467	1	13392	13392		0.51604	0	1	2678.7	+	+	22612	8253	13084	13455	17938	17938					0.08962443723044089
RRQMSPRW	8	Unmodified	_RRQMSPRW_					0	0	0			REV__ENST00000299882.9_1_11:113570319-113570877:-|nuORF	REV__ENST00000299882.9_1_11:113570319-113570877:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.8662981678	3	372.866298	1115.57707	1.8255	0.00068068	-10.277	-0.0038319	-8.4514	-0.0031512	372.8626003282263	17.429	0.095917	17.429	17.429	17.525	0	1428	46	0.7580582	0.027806818	0.7580582	461.06836	0	16.91278						132	5	3	NaN	NaN	NaN	0.76406	1	13502	13502		10.36	4.663	1	11341	+		22613	11644	13085	13456	17939	17939					0.02389965365250646
RRQQEQQVPIL	11	Unmodified	_RRQQEQQVPIL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.8967742732501	2	697.896774	1393.779	1.2635	0.00088181	-5.4667	-0.0038152	-4.2031	-0.0029334	697.8935721026787	22.187	0.072395	22.173	22.149	22.222	-0.013731	999	31	1.0210962	0.018254638	1.0195768	413.0304	0	7.383972						59	4	3	NaN	NaN	NaN	0.75376	1	19074	19074		3.9281	1.0386	1	4064.9			22614	4687	13086	13457	17940	17940					0.09785727531811972
RRRFRFHH	8	Unmodified	_RRRFRFHH_					0	0	0		ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.3421066445501	2	606.342107	1210.66966	1.5056	0.00091292	-10.815	-0.0065578	-9.3098	-0.0056449	606.3354480694144	28.146	0.072382	28.146	28.122	28.194	0	996	121	1.0229213	0.07294035	1.0229213	414.38287	0	29.547943						195	4	2	NaN	NaN	NaN	0.84887	1	16737	16737		0.32989	0.054495	1	26264			22615	7743	13087	13458	17941	17941					0.0727523121363447
RRRGQGTP	8	Unmodified	_RRRGQGTP_					0	0	0			REV__ENST00000293662.8_1_12:52407935-52408853:+|nuORF	REV__ENST00000293662.8_1_12:52407935-52408853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.5231215219002	1	927.523122	926.515845	-0.70169	-0.00065083	-0.51405	-0.00047679	-1.2157	-0.0011276	927.5219857334013	53.264	0.095982	53.264	53.24	53.336	-0.00053787	159	55	1.5245869	0.03189361	1.5230675	309.87308	0	6.4823914						122	5	3	NaN	NaN	NaN	0.84455	1	6398	6398		2.7852	0	1	9373.9	+		22616	11628	13088	13459	17942	17942					0.04964776657470793
RRRIKKCFQRI	11	Unmodified	_RRRIKKCFQRI_					0	0	0			REV__ENST00000466110.5_1_2:74593906-74595252:-|nuORF	REV__ENST00000466110.5_1_2:74593906-74595252:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.9770227000334	3	501.977023	1502.90924	1.299	0.00065209	4.372	0.0021947	5.6711	0.0028467	501.9797113357171	26.915	0.07238	26.915	26.891	26.964	0	1440	31	0.7506418	0.018544972	0.7506418	455.12076	0	11.2439575						85	4	3	NaN	NaN	NaN	0.76251	1	20596	20596		3.3044	1.7789	1	9025.5	+		22617	11252	13089	13460	17943	17943					0.17790045049810033
RRRPARRRQ	9	Unmodified	_RRRPARRRQ_					0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7729624727	1	1251.77296	1250.76569	2.0169	0.0025248	6.7378	0.0084342	8.7547	0.010959	1251.780794105475	41.041	0.24015	41.041	40.801	41.041	0	69	85	1.5776473	0.049460053	1.5776473	319.43774	0	10.014526						371	11	2	NaN	NaN	NaN	0.68801	1	17800	17800		0.23014	0	1	62942			22618	6232	13090	13461	17944	17944					0.15033379053738827
RRRPARRRQ	9	Unmodified	_RRRPARRRQ_					0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7729624727	1	1251.77296	1250.76569	1.4659	0.001835	6.7628	0.0084655	8.2288	0.010301	1251.782513389343	40.078	0.12029	40.084	40.06	40.18	0.0060463	69	82	1.5776473	0.047691107	1.5761279	319.43774	0	9.656372						311	6	4	NaN	NaN	NaN	0.68801	1	17040	17040		0.23014	0	1	69163			22619	6232	13090	13461	17945	17945					0.15033379053738827
RRRPARRRQ	9	Unmodified	_RRRPARRRQ_					0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7729624727	1	1251.77296	1250.76569	1.3134	0.0016441	7.6589	0.0095872	8.9723	0.011231	1252.785482187693	41.328	0.19266	41.336	41.24	41.432	0.0082626	66	82	1.579413	0.047691107	1.5778936	319.79526	0	9.656372						419	9	3	NaN	NaN	NaN	0.68801	1	17041	17041		0.23014	0	1	106930			22620	6232	13090	13461	17946	17946					0.15033379053738827
RRRPARRRQ	9	Unmodified	_RRRPARRRQ_					0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1251.7729624727	1	1251.77296	1250.76569	1.2374	0.001549	7.9993	0.010013	9.2367	0.011562	1251.7843765911246	41.183	0.21664	41.191	41.022	41.239	0.0074959	69	73	1.5776473	0.04238534	1.5761279	319.43774	0	8.582062						326	10	5	NaN	NaN	NaN	0.68801	1	17042	17042		0.23014	0	1	61194			22621	6232	13090	13461	17947	17947					0.15033379053738827
RRRPARRRQ	9	Unmodified						0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1251.77296	1250.76569	2.0335	0.0025455	6.2274	0.0077953	8.2609	0.010341	1251.781410941269	39.839	0.16862	39.839	39.839	40.008	0	69	79	1.5776473	0.045912623	1.5776473	319.43774		9.296265	-0.12243	-0.0002805	0.00075972	NaN	0.23014	572	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143610			22622	6232	13090	13461							0.15033379053738827
RRRPARRRQ	9	Unmodified						0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1251.77296	1250.76569	2.0546	0.0025719	6.1325	0.0076765	8.1871	0.010248	1251.7810653437675	41.281	0.072231	41.281	41.257	41.329	0	69	79	1.5776473	0.0459224	1.5776473	319.43774		9.298218	-0.027447	-0.00088349	-0.00012317	NaN	0.23014	261	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62840			22623	6232	13090	13461							0.15033379053738827
RRRRKRRHITL	11	Unmodified	_RRRRKRRHITL_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1547.9941886365002	1	1547.99419	1546.98691	1.481	0.0022926	-8.244	-0.012762	-6.763	-0.010469	1548.983187620971	39.62	0.12015	39.625	39.505	39.625	0.0053368	336	85	1.419741	0.04995072	1.4182216	286.86267	0	10.092682						245	6	2	NaN	NaN	NaN	0.78084	1	19666	19666		0.094767	0.094767	1	17330	+		22624	13086	13091	13462	17948	17948					0.23529819030204635
RRSNTSSG	8	Unmodified	_RRSNTSSG_					0	0	0			REV__ENST00000371250.3_1_1:57045132-57045240:-|nuORF	REV__ENST00000371250.3_1_1:57045132-57045240:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.4282180837001	1	864.428218	863.420942	1.868	0.0016148	-5.5179	-0.0047698	-3.6498	-0.003155	864.4246529828453	53.242	0.12014	53.242	53.218	53.338	0	375	55	1.3965509	0.032131672	1.3965509	284.15323	0	6.537781						139	6	2	NaN	NaN	NaN	0.82797	1	5574	5574		5.4659	0	1	11570	+		22625	11898	13092	13463	17949	17949					-0.016232016043773
RRSYLTWHQQ	10	Unmodified	_RRSYLTWHQQ_					0	0	0		ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.8549094585501	2	687.854909	1373.69527	2.4881	0.0017115	0.77418	0.00053252	3.2623	0.002244	688.3575167289624	19.202	0.048082	19.188	19.164	19.212	-0.014141	1080	28	0.9717421	0.016474426	0.97022265	393.12323	0	6.664795						36	3	2	NaN	NaN	NaN	0.77665	1	18904	18904		1.3312	0.29113	1	2703.6			22626	5105	13093	13464	17950	17950					0.023366161547528463
RRSYLTWHQQ	10	Unmodified						0	0	0		ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	687.854909	1373.69527	2.071	0.0014246	-0.023869	-1.6418E-05	2.0472	0.0014082	687.8551437593289	19.18	0.047939	19.18	19.156	19.204	0	1074	34	0.9754029	0.020135403	0.9754029	394.60422		8.145874	-0.0038872	-0.0006195	0.0025901	NaN	1.3312	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3837.6			22627	5105	13093	13464							0.023366161547528463
RRTAIDLIGRG	11	Unmodified	_RRTAIDLIGRG_					0	0	0		ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7	ENSG00000091157|ENST00000254442|WDR7	ENSG00000091157|ENST00000254442|WDR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.3676526930501	2	614.367653	1226.72075	1.8048	0.0011088	0.18413	0.00011312	1.989	0.0012219	614.3677628373931	17.978	0.04796	17.964	17.94	17.988	-0.013786	1107	34	0.9552588	0.020157099	0.9537394	386.9158	0	8.164398						71	3	3	NaN	NaN	NaN	0.66717	1	16471	16471		9.6116	2.024	1	5228.8			22628	1076	13094	13465	17951	17951					0.11646090677186294
RRTAIDLIGRG	11	Unmodified						0	0	0		ENSG00000091157|ENST00000254442|WDR7;nc|ENSG00000091157|Q9Y4E6-2|WDR7	ENSG00000091157|ENST00000254442|WDR7	ENSG00000091157|ENST00000254442|WDR7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	614.367653	1226.72075	1.4325	0.00088005	0.065339	4.0142E-05	1.4978	0.00092019	614.3670403836355	17.957	0.048019	17.957	17.933	17.981	0	1107	43	0.9552588	0.025655925	0.9552588	386.9158		10.391602	-0.003547	-7.776E-05	0.00075972	NaN	9.6116	73	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8111.3			22629	1076	13094	13465							0.11646090677186294
RRTAPLFP	8	Unmodified	_RRTAPLFP_					0	0	0			REV__nc|ENSG00000291092|Q13401-2|PMS2P3	REV__nc|ENSG00000291092|Q13401-2|PMS2P3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.5628610716001	1	957.562861	956.555585	-0.2147	-0.00020559	-1.2022	-0.0011512	-1.4169	-0.0013568	957.5607144627436	53.24	0.14396	53.24	53.216	53.36	-0.00053787	198	61	1.5015416	0.03547871	1.5000222	305.04874	0	7.207733						144	7	2	NaN	NaN	NaN	0.84512	1	7122	7122		2.4615	0	1	17764	+		22630	12185	13095	13466	17952	17952					0.075569036081788
RRTARSIL	8	Unmodified	_RRTARSIL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000540987.1_1_12:133225370-133225942:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.6061228698003	1	972.606123	971.598846	1.9302	0.0018773	-1.917	-0.0018645	0.013163	1.2802E-05	972.6032832009251	54.572	0.096405	54.572	54.524	54.62	0	165	61	1.5210435	0.035437346	1.5210435	308.94278	0	7.197754						172	5	3	NaN	NaN	NaN	0.84512	1	7664	7664		2.4615	0	1	21838			22631	5060	13096	13467	17953	17953					0.11191093385480144
RRTARSIL	8	Unmodified						0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000540987.1_1_12:133225370-133225942:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	972.606123	971.598846	-0.33477	-0.0003256	-0.28312	-0.00027536	-0.61789	-0.00060096	972.6063701703462	54.594	0.12047	54.593	54.545	54.666	-0.0006218	162	58	1.5228153	0.033660054	1.5212959	309.30264		6.836792	0.010693	0.00083313	0.00012617	NaN	2.4615	177	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21846			22632	5060	13096	13467							0.11191093385480144
RRTDESLFPKM	11	Unmodified	_RRTDESLFPKM_					0	0	0			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.574849509	3	460.57485	1378.70272	1.6126	0.00074272	4.2835	0.0019729	5.8961	0.0027156	460.91172882641445	28.629	0.048265	28.629	28.581	28.629	0	1386	19	0.78399014	0.011102855	0.78399014	475.73013	0	6.737274						22	3	2	NaN	NaN	NaN	0.76803	1	19880	19880		0.7918	0	1	1342.2	+		22633	8781	13097	13468	17954	17954					0.028515876401570495
RRVGRSGW	8	Unmodified	_RRVGRSGW_					0	0	0			REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5438569640002	1	973.543857	972.53658	2.1607	0.0021035	-10.637	-0.010356	-8.4766	-0.0082523	973.5356247189898	53.242	0.16813	53.242	53.194	53.362	0	171	199	1.5174994	0.117117405	1.5174994	308.21878	0	23.787659						738	8	5	NaN	NaN	NaN	0.81251	1	7683	7683		7.5404	2.0745	1	117830	+		22634	12712	13098	13469	17955	17955					0.04921367037127311
RRVPFQASDPR	11	Unmodified	_RRVPFQASDPR_					0	0	0			REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.86273449065	2	664.862734	1327.71092	1.359	0.00090357	3.8947	0.0025894	5.2537	0.003493	664.8650193563476	41.256	0.19265	41.263	41.215	41.408	0.0074921	1224	37	0.883646	0.022078753	0.88212657	357.60684	0	8.93515						119	9	2	NaN	NaN	NaN	0.77059	1	18367	18367		1.8901	1.199	1	9724.6	+		22635	12026	13099	13470	17956	17956					0.06016902671785829
RRVPFQASDPR	11	Unmodified						0	0	0			REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.862734	1327.71092	1.0436	0.00069386	5.4754	0.0036404	6.519	0.0043342	664.8668035732915	41.305	0.096264	41.305	41.257	41.353	0	1227	31	0.88180584	0.018400967	0.88180584	356.86212		7.446747	0.021088	0.0010988	-0.00016038	NaN	1.8901	102	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6589.5	+		22636	12026	13099	13470							0.06016902671785829
RRVPFQASDPR	11	Unmodified						0	0	0			REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	REV__ENST00000399075.6_1_4:120221719-120221797:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	664.862734	1327.71092	1.359	0.00090357	3.8947	0.0025894	5.2537	0.003493	664.8650193563476	41.256	0.19265	41.263	41.215	41.408	0.0074921	1224	37	0.883646	0.022078753	0.88212657	357.60684		8.93515	-0.021088	-0.0010031	0.00016038	NaN	1.8901	119	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9724.6	+		22637	12026	13099	13470							0.06016902671785829
RRVPPPPC	8	Unmodified	_RRVPPPPC_					0	0	0			REV__ENSG00000135900|ENST00000258383|MRPL44	REV__ENSG00000135900|ENST00000258383|MRPL44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5087170111001	1	921.508717	920.501441	-0.49683	-0.00045783	-4.143	-0.0038178	-4.6398	-0.0042757	921.5046001041194	53.264	0.21582	53.264	53.216	53.432	-0.00053787	240	85	1.4766881	0.049759984	1.4751687	300.16635	0	10.114685						405	10	4	NaN	NaN	NaN	0.84651	1	6294	6294		1.6704	0.2308	1	65573	+		22638	9636	13100	13471	17957	17957					0.03800988184957532
RRWKPPAVNQQ	11	Unmodified	_RRWKPPAVNQQ_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.59334333050003	3	460.593343	1378.7582	1.0933	0.00050356	-6.902	-0.003179	-5.8087	-0.0026754	460.59005639515397	28.676	0.096542	28.668	28.644	28.74	-0.0083504	1395	28	0.7784366	0.016666055	0.77691716	472.36008	0	10.113037						56	5	2	NaN	NaN	NaN	0.76304	1	18948	18948		1.1021	0	1	4644.7			22639	2973	13101	13472	17958	17958					0.08397181942791576
RRWLPLFFL	9	Unmodified	_RRWLPLFFL_					0	0	0			REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1247.7411597882	1	1247.74116	1246.73388	1.5677	0.0019561	7.1477	0.0089185	8.7154	0.010875	1247.7498856420132	35.217	0.024136	35.217	35.217	35.241	0	60	61	1.582944	0.035313725	1.582944	320.52155	0	7.150482						94	2	3	NaN	NaN	NaN	0.68748	1	17699	17699		0.27539	0	1	8260.6	+		22640	12399	13102	13473	17959	17959					0.12038573527229346
RRWLPLFFL	9	Unmodified						0	0	0			REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1247.74116	1246.73388	1.5677	0.0019561	7.1477	0.0089185	8.7154	0.010875	1247.7498856420132	35.217	0.024136	35.217	35.217	35.241	0	60	61	1.582944	0.035313725	1.582944	320.52155		7.150482	0.00071841	-0.00055967	0.00075972	NaN	0.27539	94	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8260.6	+		22641	12399	13102	13473							0.12038573527229346
RRWLPLFFL	9	Unmodified						0	0	0			REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	REV__ENST00000483474.1_1_1:100731850-100732734:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1247.74116	1246.73388	1.3506	0.0016852	8.0804	0.010082	9.4309	0.011767	1247.7520366443407	35.215	0.024124	35.215	35.215	35.239	-4.5776E-05	60	58	1.582944	0.033549786	1.5814246	320.52155		6.7933044	-0.00071841	0.00060402	-0.00075972	NaN	0.27539	90	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8624.8	+		22642	12399	13102	13473							0.12038573527229346
RRWNQMMKK	9	Unmodified	_RRWNQMMKK_					0	0	0		ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	ENST00000471115.5_1_1:85718343-85724278:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.5621097674	3	426.56211	1276.6645	1.8682	0.00079689	-6.1843	-0.002638	-4.3162	-0.0018411	426.5591653198894	23.151	0.072407	23.138	23.138	23.21	-0.013294	1377	28	0.7895419	0.01665157	0.78802246	479.47842	0	10.112274						49	4	2	NaN	NaN	NaN	0.68801	1	17540	17540		0.079465	0	1	4052.1			22643	7150	13103	13474	17960	17960					0.037234232444916415
RRWQWWKKRR	10	Unmodified	_RRWQWWKKRR_					0	0	0		ENST00000324344.8_1_16:20911624-20911678:-|nuORF	ENST00000324344.8_1_16:20911624-20911678:-|nuORF	ENST00000324344.8_1_16:20911624-20911678:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	793.4580020696	2	793.458002	1584.90145	2.3148	0.0018367	6.7768	0.0053771	9.0916	0.0072138	793.4629059812758	25.708	0.048235	25.708	25.684	25.732	0	948	49	1.0520974	0.02915728	1.0520974	425.06577	0	11.78006						83	3	3	NaN	NaN	NaN	0.78146	1	20730	20730		0.16111	0.048055	1	5438.4			22644	6488	13104	13475	17961	17961					0.13239653844516397
RRWRLLPFRQK	11	Unmodified	_RRWRLLPFRQK_					0	0	0		ENST00000371646.9_1_6:44214858-44216493:+|nuORF	ENST00000371646.9_1_6:44214858-44216493:+|nuORF	ENST00000371646.9_1_6:44214858-44216493:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.47586047175	2	778.47586	1554.93717	-0.15921	-0.00012394	-3.8606	-0.0030054	-4.0198	-0.0031293	778.4733646731097	53.826	0.18528	53.825	53.712	53.897	-0.00059128	918	40	1.070307	0.023661017	1.0687876	432.49496	0	9.561066						126	8	3	NaN	NaN	NaN	0.78074	1	19681	19681		0.11306	0.11306	1	12386			22645	6659	13105	13476	17962	17962					0.18189691301517996
RRWSGTQSI	9	Unmodified	_RRWSGTQSI_					0	0	0			REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7912465692501	2	545.791247	1089.56794	1.6283	0.00088869	-0.16698	-9.1138E-05	1.4613	0.00079755	545.791697380224	29.932	0.12064	29.932	29.908	30.029	0	1260	43	0.8615505	0.025794804	0.8615505	349.44876	0	10.462463						151	6	3	NaN	NaN	NaN	0.2961	1	12379	12379		19.164	0	1	22161	+		22646	10450	13106	13477	17963	17963					0.026738952805771987
RRWSGTQSI	9	Unmodified						0	0	0			REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.791247	1089.56794	1.6283	0.00088869	-0.16698	-9.1138E-05	1.4613	0.00079755	545.791697380224	29.932	0.12064	29.932	29.908	30.029	0	1260	43	0.8615505	0.025794804	0.8615505	349.44876		10.462463	0.0036548	-0.00034492	0.00075972	NaN	19.164	151	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22161	+		22647	10450	13106	13477							0.026738952805771987
RRWSGTQSI	9	Unmodified						0	0	0			REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	REV__nc|ENSG00000166833|Q8IVL1-5|NAV2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.791247	1089.56794	1.0472	0.00057154	0.28558	0.00015586	1.3327	0.0007274	545.7915332721058	29.931	0.12063	29.925	29.901	30.021	-0.0064087	1260	52	0.8615505	0.031313777	0.8600311	349.44876		12.701019	-0.0036548	0.00014908	-0.00075972	NaN	19.164	155	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23791	+		22648	10450	13106	13477							0.026738952805771987
RRYILTLFQ	9	Unmodified	_RRYILTLFQ_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.3587650284501	2	605.358765	1208.70298	1.4074	0.00085199	-10.624	-0.0064312	-9.2165	-0.0055793	605.352471896597	22.26	0.12061	22.26	22.212	22.332	0	1146	40	0.93142134	0.023855448	0.93142134	377.32336	0	9.663971						133	6	3	NaN	NaN	NaN	0.58159	1	16707	16707		6.2502	1.3405	1	14399	+		22649	11375	13107	13478	17964	17964					0.10697375422319055
RSAGLKNL	8	Unmodified	_RSAGLKNL_					0	0	0			REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.76142649729996	2	429.761426	857.5083	1.6734	0.00071917	-1.5695	-0.00067453	0.10388	4.4643E-05	429.7604648115531	18.026	0.096027	18.012	17.964	18.06	-0.013786	1356	34	0.8024889	0.020336509	0.8009695	326.59067	0	8.276398						105	5	3	NaN	NaN	NaN	0.75561	1	5374	5374		15.175	0	1	11788	+		22650	13584	13108	13479	17965	17965					0.07384624337169043
RSAGLKNL	8	Unmodified						0	0	0			REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	429.761426	857.5083	1.6734	0.00071917	-1.5695	-0.00067453	0.10388	4.4643E-05	429.7604648115531	18.026	0.096027	18.012	17.964	18.06	-0.013786	1356	34	0.8024889	0.020336509	0.8009695	326.59067		8.276398	0.051535	0.00049846	-0.00075972	NaN	15.175	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11788	+		22651	13584	13108	13479							0.07384624337169043
RSAGRRRCAG	10	Unmodified	_RSAGRRRCAG_					0	0	0		ENST00000512731.5_1_1:1567737-1568735:+|nuORF	ENST00000512731.5_1_1:1567737-1568735:+|nuORF	ENST00000512731.5_1_1:1567737-1568735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2939648212	2	545.293965	1088.57338	1.9591	0.0010683	2.7	0.0014723	4.6591	0.0025406	545.7968960884003	25.684	0.12057	25.672	25.576	25.696	-0.0116	1239	58	0.87444305	0.034986377	0.8729236	354.68204	0	14.190796						237	6	4	NaN	NaN	NaN	0.6772	1	12030	12030		9.6116	0.48844	1	30460			22652	7360	13109	13480	17966	17966					0.032632955913641126
RSALSLPPG	9	Unmodified	_RSALSLPPG_					0	0	0		PRDM9|p.P235R|1|0.34|ENSG00000164256|chr5:23522707-23522707|C/G|missense_variant;nc|ENSG00000126856|Q9NQW5-2|PRDM7;nc|ENSG00000126856|Q9NQW5-1|PRDM7;ENSG00000126856|ENST00000449207|PRDM7;ENSG00000164256|ENST00000296682|PRDM9	PRDM9|p.P235R|1|0.34|ENSG00000164256|chr5:23522707-23522707|C/G|missense_variant	PRDM9|p.P235R|1|0.34|ENSG00000164256|chr5:23522707-23522707|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.5152421770001	1	897.515242	896.507966	1.2713	0.001141	6.289	0.0056445	7.5603	0.0067855	897.5222972407882	30.897	0.048241	30.897	30.873	30.922	0	351	34	1.4108255	0.019618273	1.4108255	286.89148	0	3.98938						46	3	2	NaN	NaN	NaN	0.24994	1	6013	6013		22.126	5.7097	1	3198.2			22653	2517	13110	13481	17967	17967					0.05557204617332445
RSASAAVRVAY	11	Unmodified	_RSASAAVRVAY_					0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8200040087	2	575.820004	1149.62546	1.6392	0.00094389	-4.9683	-0.0028608	-3.3291	-0.0019169	575.8167808137175	14.285	0.16809	14.285	14.261	14.429	0	1227	55	0.88180584	0.033132493	0.88180584	357.43097	0	13.429901						169	8	3	NaN	NaN	NaN	0.58035	1	14801	14801		15.311	5.565	1	20506			22654	6950	13111	13482	17968	17968					0.05662737486136393
RSASAAVRVAY	11	Unmodified						0	0	0		ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	ENST00000427191.6_1_4:87515508-87515601:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	575.820004	1149.62546	1.1147	0.00064189	-3.4645	-0.0019949	-2.3497	-0.001353	575.8177793830716	14.38	0.21556	14.369	14.273	14.489	-0.011219	1227	43	0.88180584	0.025764108	0.8802864	357.43097		10.443207	0.041931	0.00046314	-0.00075972	NaN	15.311	185	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18912			22655	6950	13111	13482							0.05662737486136393
RSCRLHRPPA	10	Unmodified	_RSCRLHRPPA_					0	0	0		ENST00000379644.8_2_8:43046729-43048925:+|nuORF	ENST00000379644.8_2_8:43046729-43048925:+|nuORF	ENST00000379644.8_2_8:43046729-43048925:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.8276404630502	2	596.82764	1191.64073	1.0016	0.0005978	-0.73422	-0.0004382	0.26741	0.0001596	596.8272923158205	24.767	0.072361	24.755	24.731	24.803	-0.012392	1038	94	0.997351	0.05662304	0.9958316	404.09705	0	22.942017						134	4	2	NaN	NaN	NaN	0.78213	1	15588	15588		0	0	1	9470.6			22656	6724	13112	13483	17969	17969					0.05257325802358537
RSDIEAQLM	9	Unmodified	_RSDIEAQLM_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5248205852997	1	1062.52482	1061.51754	1.934	0.0020549	-0.93946	-0.0009982	0.99452	0.0010567	1063.5284093016105	26.867	0.45898	26.867	26.698	27.157	0	153	169	1.5281296	0.099203706	1.5281296	310.0141	0	20.12564						1272	20	4	NaN	NaN	NaN	0.13602	1	11174	11174		30.61	1.7145	1	193640	+		22657	9544	13113	13484	17970	17970					-0.01075395159477921
RSDQIYSK	8	Unmodified	_RSDQIYSK_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5108850806001	1	996.510885	995.503609	1.993	0.001986	-11.437	-0.011397	-9.4438	-0.0094109	996.498384837174	28.412	0.072384	28.412	28.363	28.436	0	222	88	1.4873441	0.05152893	1.4873441	301.99658	0	10.4626465						126	4	2	NaN	NaN	NaN	0.80692	1	8408	8408		8.2903	1.4271	1	11184	+		22658	9893	13114	13485	17971	17971					0.005676954037653559
RSDQIYSK	8	Unmodified						0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.510885	995.503609	1.993	0.001986	-11.437	-0.011397	-9.4438	-0.0094109	996.498384837174	28.412	0.072384	28.412	28.363	28.436	0	222	88	1.4873441	0.05152893	1.4873441	301.99658		10.4626465	-0.055806	0.0030829	-0.007226	NaN	8.2903	126	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11184	+		22659	9893	13114	13485							0.005676954037653559
RSDQIYSK	8	Unmodified						0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.510885	995.503609	1.998	0.001991	-16.932	-0.016873	-14.934	-0.014882	996.4938153538392	28.532	0.096508	28.523	28.475	28.572	-0.0083485	195	43	1.5033154	0.024832487	1.501796	305.2395		5.0420837	0.055806	-0.0023936	0.007226	NaN	8.2903	50	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3599.9	+		22660	9893	13114	13485							0.005676954037653559
RSEGGGWSLL	10	Unmodified	_RSEGGGWSLL_					0	0	0			REV__nc|ENSG00000291158|P0C866|LINC00869	REV__nc|ENSG00000291158|P0C866|LINC00869	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2723553243501	2	531.272355	1060.53016	1.0546	0.0005603	-5.7471	-0.0030533	-4.6924	-0.002493	531.7709485786064	33.383	0.19309	33.383	33.287	33.48	0	1278	73	0.85049206	0.04422921	0.85049206	345.08133	0	17.945679						331	9	3	NaN	NaN	NaN	0.70677	1	11120	11120		7.5876	0.047225	1	36618	+		22661	12250	13115	13486	17972	17972					0.0023138429510254355
RSFFLCME	8	Unmodified	_RSFFLCME_					0	0	0			REV__ENST00000550106.5_1_12:95692693-95693986:+|nuORF	REV__ENST00000550106.5_1_12:95692693-95693986:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7357055252502	2	516.735706	1031.45686	1.5547	0.00080339	-3.3122	-0.0017115	-1.7575	-0.00090814	516.7332675121012	32.779	0.096535	32.776	32.727	32.824	-0.0031052	1305	37	0.83389086	0.02214086	0.8323714	338.46774	0	8.986755						53	5	2	NaN	NaN	NaN	0.84512	1	9620	9620		2.4615	0	1	3588.5	+		22662	12733	13116	13487	17973	17973					-0.05761203743372789
RSFRELLFN	9	Unmodified	_RSFRELLFN_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.3249222111001	2	591.324922	1180.63529	0.95514	0.0005648	-7.5087	-0.0044401	-6.5535	-0.0038753	591.3209921539479	28.773	0.26542	28.765	28.62	28.885	-0.0083504	1143	100	0.9332562	0.06058234	0.93173677	378.1681	0	24.548798						451	12	3	NaN	NaN	NaN	0.19455	1	15267	15267		23.118	0	1	88476			22663	4131	13117	13488	17974	17974					0.052199254915194615
RSGFGAPI	8	Unmodified	_RSGFGAPI_					0	0	0			REV__ENST00000315520.9_1_12:50367174-50369543:+|nuORF	REV__ENST00000315520.9_1_12:50367174-50369543:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.4362635745	1	804.436264	803.428987	1.7319	0.0013932	-10.173	-0.0081836	-8.4412	-0.0067904	804.4279601472281	34.155	0.3135	34.155	34.083	34.396	0	480	112	1.3339561	0.06631994	1.3339561	271.73474	0	13.509766						614	14	4	NaN	NaN	NaN	0.75347	1	4787	4787		15.463	1.4211	1	115350	+		22664	11702	13118	13489	17975	17975					0.019409773830375343
RSGGELYIDYE	11	Unmodified	_RSGGELYIDYE_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3040493832501	2	651.304049	1300.59355	0.75177	0.00048963	-10.298	-0.0067072	-9.5463	-0.0062175	651.297983796505	31.525	0.1207	31.525	31.525	31.646	0	1104	58	0.9570911	0.0348168	0.9570911	387.4129	0	14.093201						185	6	3	NaN	NaN	NaN	0.7072	1	18786	18786		6.9844	1.2902	1	17511			22665	1624	13119	13490	17976	17976					-0.04472719778323153
RSGHTPFLIR	10	Unmodified	_RSGHTPFLIR_					0	0	0			REV__ENST00000260184.11_1_4:169343041-169343730:-|nuORF	REV__ENST00000260184.11_1_4:169343041-169343730:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3383639373501	2	592.338364	1182.66217	1.5719	0.00093112	-11.292	-0.0066887	-9.72	-0.0057575	592.3323793364892	19.948	0.12023	19.948	19.924	20.045	0	1146	37	0.93142134	0.022019207	0.93142134	377.41714	0	8.922333						87	6	3	NaN	NaN	NaN	0.5626	1	15938	15938		16.858	3.3953	1	7942.8	+		22666	11538	13120	13491	17977	17977					0.07815034102691243
RSHKYTQL	8	Unmodified	_RSHKYTQL_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5585039752	1	1032.5585	1031.55123	1.3101	0.0013527	-1.3819	-0.0014269	-0.071881	-7.4222E-05	1032.5565434807552	29.111	0.41024	29.103	28.958	29.368	-0.0077209	153	112	1.5281296	0.06556952	1.5266101	310.12964	0	13.307159						538	18	2	NaN	NaN	NaN	0.43738	1	9645	9645		34.439	0	1	122450	+		22667	11227	13121	13492	17978	17978					0.03671394394609706
RSHLQYFGRS	10	Unmodified	_RSHLQYFGRS_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.5511441648	3	417.551144	1249.6316	1.1544	0.00048201	-7.3007	-0.0030484	-6.1463	-0.0025664	417.5482273242424	24.864	0.31364	24.851	24.707	25.02	-0.012392	1437	52	0.7524962	0.031528115	0.75097674	457.0867	0	19.151031						402	14	4	NaN	NaN	NaN	0.41164	1	17016	17016		14.45	5.5079	1	64415			22668	4301	13122	13493	17979	17979					0.016772557176409464
RSISGFPRFL	10	Unmodified	_RSISGFPRFL_					0	0	0			REV__ENST00000590158.1_1_19:10225792-10226817:-|nuORF	REV__ENST00000590158.1_1_19:10225792-10226817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.3352899321501	2	590.33529	1178.65603	0.78015	0.00046055	-8.9427	-0.0052792	-8.1625	-0.0048186	590.330161956805	40.751	0.19208	40.757	40.685	40.877	0.0067558	1176	55	0.9130621	0.033064544	0.91154265	369.99234	0	13.398468						343	9	4	NaN	NaN	NaN	0.60686	1	15211	15211		14.425	0	1	62711	+		22669	9497	13123	13494	17980	17980					0.0738451587117197
RSLFGATV	8	Unmodified	_RSLFGATV_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.7427024279	2	425.742702	849.470852	1.1149	0.00047467	-5.4541	-0.002322	-4.3391	-0.0018474	425.7405069857409	30.511	0.12063	30.511	30.463	30.584	0	1356	55	0.8024889	0.03327614	0.8024889	326.6393	0	13.544464						127	6	3	NaN	NaN	NaN	0.78967	1	5378	5378		10.605	0	1	12183			22670	3946	13124	13495	17981	17981					0.040095330715644195
RSLNYEEM	8	Unmodified	_RSLNYEEM_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L588Rfs*12|1|0.28|ENSG00000113555|chr5:141956078-141956091|TGGGCACCAGCAGG/-|frameshift_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.237123911	2	521.237124	1040.45969	1.6159	0.00084227	4.9998	0.0026061	6.6157	0.0034484	521.238231114878	28.436	0.12067	28.436	28.363	28.484	0	1296	43	0.8394264	0.025831044	0.8394264	340.6757	0	10.483368						98	6	2	NaN	NaN	NaN	0.83913	1	10220	10220		3.9685	0.39529	1	8643.6			22671	1920	13125	13496	17982	17982					-0.058916570848850824
RSLNYEEM	8	Unmodified						0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L588Rfs*12|1|0.28|ENSG00000113555|chr5:141956078-141956091|TGGGCACCAGCAGG/-|frameshift_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.237124	1040.45969	1.7497	0.00091199	-0.91079	-0.00047474	0.83887	0.00043725	521.2372713682055	28.387	0.12069	28.378	28.354	28.474	-0.0089779	1302	46	0.8357362	0.027677655	0.8342168	339.17807		11.232788	-0.028966	-0.0029524	-0.0026048	NaN	3.9685	51	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3663.3			22672	1920	13125	13496							-0.058916570848850824
RSNRELTL	8	Unmodified	_RSNRELTL_					0	0	0			REV__ENST00000593682.1_1_19:12690915-12691281:-|nuORF	REV__ENST00000593682.1_1_19:12690915-12691281:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5534185973	1	988.553419	987.546142	1.3236	0.0013084	8.0643	0.007972	9.3879	0.0092804	988.5616384552737	32.851	0.048267	32.848	32.8	32.848	-0.0031052	192	85	1.5050892	0.049685955	1.5035697	305.63315	0	10.089569						99	3	2	NaN	NaN	NaN	0.63138	1	7977	7977		23.334	2.779	1	16881	+		22673	12938	13126	13497	17983	17983					0.051870905319901794
RSNVQAKEQ	9	Unmodified	_RSNVQAKEQ_					0	0	0			REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2807116727	2	530.280712	1058.54687	2.1695	0.0011504	-1.8074	-0.00095845	0.36201	0.00019197	530.2796876627217	11.5	0.16812	11.5	11.428	11.596	0	1284	34	0.8468043	0.020285964	0.8468043	343.5933	0	8.231079						110	8	2	NaN	NaN	NaN	0.46215	1	11032	11032		11.17	0	1	10547	+		22674	8500	13127	13498	17984	17984					0.01993885181036603
RSNVQAKEQ	9	Unmodified						0	0	0			REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	REV__LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.280712	1058.54687	2.1695	0.0011504	-1.8074	-0.00095845	0.36201	0.00019197	530.2796876627217	11.5	0.16812	11.5	11.428	11.596	0	1284	34	0.8468043	0.020285964	0.8468043	343.5933		8.231079	0.026769	-0.00032906	0.00075972	NaN	11.17	110	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10547	+		22675	8500	13127	13498							0.01993885181036603
RSNVSFLLYF	10	Unmodified	_RSNVSFLLYF_					0	0	0			REV__ENST00000604759.1_1_14:39684672-39685536:+|nuORF	REV__ENST00000604759.1_1_14:39684672-39685536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.89239587630004	3	415.892396	1244.65536	1.6042	0.00066717	-2.5842	-0.0010748	-0.98003	-0.00040759	415.8908885065257	15.58	0.047951	15.568	15.52	15.568	-0.012201	1479	55	0.72651637	0.033428073	0.7249969	441.32507	0	20.306						73	3	2	NaN	NaN	NaN	0.74854	1	16893	16893		2.239	1.1369	1	8980.9	+		22676	12972	13128	13499	17985	17985					0.0428167643146935
RSPEPKLA	8	Unmodified	_RSPEPKLA_					0	0	0			REV__ENST00000414198.5_1_3:18486636-18505828:+|nuORF	REV__ENST00000414198.5_1_3:18486636-18505828:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.2612593218	2	449.261259	896.507966	1.093	0.00049103	-4.2793	-0.0019225	-3.1863	-0.0014315	449.2598286419831	14.884	0.1682	14.872	14.848	15.016	-0.011737	1380	28	0.7876915	0.016653419	0.78617203	320.34888	0	6.772827						86	8	2	NaN	NaN	NaN	0.81756	1	5900	5900		6.8632	0.77288	1	6555.9	+		22677	12082	13129	13500	17986	17986					0.05557204617332445
RSPQRGLSP	9	Unmodified	_RSPQRGLSP_					0	0	0			REV__ENSG00000133393|ENST00000255759|CEP20	REV__ENSG00000133393|ENST00000255759|CEP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.2805147074501	2	499.280515	996.546476	1.7891	0.00089324	0.82334	0.00041108	2.6124	0.0013043	499.28107946349286	28.339	0.072357	28.339	28.315	28.388	0	1293	70	0.84127116	0.042452812	0.84127116	341.6208	0	17.239105						88	4	2	NaN	NaN	NaN	0.54912	1	8453	8453		7.5876	1.1577	1	5072.9	+		22678	9566	13130	13501	17987	17987					0.04806510251864893
RSQDLRRR	8	Unmodified	_RSQDLRRR_					0	0	0			REV__ENST00000580541.1_1_17:57189640-57232487:-|nuORF	REV__ENST00000580541.1_1_17:57189640-57232487:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	362.8794837107333	3	362.879484	1085.61662	1.6995	0.00061671	4.3212	0.0015681	6.0207	0.0021848	362.8809600679487	16.038	0.16793	16.038	16.014	16.182	0	1413	40	0.7673241	0.024086237	0.7673241	466.8609	0	14.654724						116	8	3	NaN	NaN	NaN	0.74229	1	12213	12213		12.049	0	1	14804	+		22679	12182	13131	13502	17988	17988					0.07723808640321295
RSREAWALYLF	11	Unmodified	_RSREAWALYLF_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3776860631001	2	706.377686	1410.74082	0.43454	0.00030695	-6.0264	-0.0042569	-5.5919	-0.00395	706.374569157083	33.866	0.096519	33.866	33.793	33.89	0	1008	31	1.0156195	0.018258572	1.0156195	410.76657	0	7.3847046						62	5	2	NaN	NaN	NaN	0.44296	1	20154	20154		20.513	0	1	5550.7			22680	5639	13132	13503	17989	17989					0.05187841617134836
RSREAWALYLF	11	Unmodified						0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	706.377686	1410.74082	1.0754	0.00075964	-6.1155	-0.0043199	-5.0401	-0.0035602	706.3742725527247	33.913	0.12061	33.911	33.863	33.984	-0.0012474	1005	31	1.0174452	0.018258572	1.0159258	411.50497		7.3847046	0.022875	-5.7131E-05	0.00015316	NaN	20.513	69	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4120.7			22681	5639	13132	13503							0.05187841617134836
RSRELCWPCT	10	Unmodified	_RSRELCWPCT_					0	0	0			REV__ENST00000534802.1_1_11:46400234-46401494:+|nuORF	REV__ENST00000534802.1_1_11:46400234-46401494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.7920746987002	2	625.792075	1249.5696	1.7566	0.0010993	-0.44598	-0.00027909	1.3106	0.00082019	625.7912290913331	19.997	0.26442	19.997	19.9	20.165	0	1197	85	0.9001988	0.051433682	0.9001988	364.54025	0	20.82837						470	12	3	NaN	NaN	NaN	0.66626	1	17762	17762		10.36	0	1	41406	+		22682	12670	13133	13504	17990	17990					-0.04520555017325023
RSRELCWPCT	10	Unmodified						0	0	0			REV__ENST00000534802.1_1_11:46400234-46401494:+|nuORF	REV__ENST00000534802.1_1_11:46400234-46401494:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	625.792075	1249.5696	1.7566	0.0010993	-0.44598	-0.00027909	1.3106	0.00082019	625.7912290913331	19.997	0.26442	19.997	19.9	20.165	0	1197	85	0.9001988	0.051433682	0.9001988	364.54025		20.82837	0	0	0	NaN	10.36	470	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41406	+		22683	12670	13133	13504							-0.04520555017325023
RSRLLPWPLT	10	Unmodified	_RSRLLPWPLT_					0	0	0		ENST00000579188.1_1_17:80358582-80358996:-|nuORF	ENST00000579188.1_1_17:80358582-80358996:-|nuORF	ENST00000579188.1_1_17:80358582-80358996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8720395792001	2	619.87204	1237.72953	0.25482	0.00015796	-4.931	-0.0030566	-4.6761	-0.0028986	619.8686358091054	32.055	0.09655	32.051	32.003	32.099	-0.0037613	1092	58	0.9644182	0.03478682	0.96289873	390.58707	0	14.088562						97	5	2	NaN	NaN	NaN	0.77884	1	16742	16742		0.79988	0.10873	1	16570			22684	7675	13134	13505	17991	17991					0.1201706431365892
RSRMPWKKLPH	11	Unmodified	_RSRMPWKKLPH_					0	0	0			REV__ENSG00000163792|ENST00000296096|TCF23	REV__ENSG00000163792|ENST00000296096|TCF23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.2749572313667	3	479.274957	1434.80304	1.6843	0.00080726	-9.7299	-0.0046633	-8.0455	-0.003856	479.2703317209293	19.996	0.07225	19.982	19.934	20.006	-0.014141	1344	49	0.8098828	0.029559612	0.8083634	491.2515	0	17.929993						68	4	2	NaN	NaN	NaN	0.76404	1	19336	19336		3.0365	1.0006	1	9801.7	+		22685	10299	13135	13506	17992	17992					0.10303289484477318
RSRTVGLP	8	Unmodified	_RSRTVGLP_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.2668760159501	2	443.266876	884.519199	1.2306	0.0005455	-0.76835	-0.00034058	0.46228	0.00020491	443.26654259472446	29.86	0.12066	29.86	29.836	29.956	0	1221	115	0.885486	0.06995392	0.885486	360.19485	0	28.455597						188	6	2	NaN	NaN	NaN	0.84876	1	5869	5869		0.39566	0	1	18740			22686	6792	13136	13507	17993	17993					0.07232026711483286
RSRTVGLP	8	Unmodified						0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	443.266876	884.519199	0.76717	0.00034006	-1.3758	-0.00060987	-0.60868	-0.00026981	443.26613256986815	29.859	0.12064	29.852	29.828	29.948	-0.0070648	1212	127	0.8910048	0.07730913	0.88948536	362.43976		31.44754	-0.0039877	-0.00025311	0.0019997	NaN	0.39566	261	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24315			22687	6792	13136	13507							0.07232026711483286
RSRWAARAWTV	11	Unmodified	_RSRWAARAWTV_					0	0	0		ENST00000256720.6_2_2:11925037-11925136:+|nuORF	ENST00000256720.6_2_2:11925037-11925136:+|nuORF	ENST00000256720.6_2_2:11925037-11925136:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.91793841366655	3	453.917938	1358.73199	1.8828	0.00085464	-9.3601	-0.0042487	-7.4773	-0.0033941	453.91357078515944	20.02	0.048174	20.006	19.982	20.03	-0.014141	1362	40	0.79879075	0.024044454	0.7972713	484.78195	0	14.592468						42	3	2	NaN	NaN	NaN	0.7782	1	18765	18765		0.55697	0.066197	1	3545.6			22688	6289	13137	13508	17994	17994					0.0669691277128095
RSRYQDGVYW	10	Unmodified	_RSRYQDGVYW_					0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6;nc|ENSG00000136859|Q9UKU9-2|ANGPTL2;ENSG00000136859|ENST00000373425|ANGPTL2	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3203681494501	2	665.320368	1328.62618	2.0264	0.0013482	-2.4462	-0.0016275	-0.41976	-0.00027927	665.3192264095295	30.993	0.072393	30.988	30.964	31.036	-0.0050716	1083	70	0.9699114	0.042128563	0.96839195	392.51523	0	17.049042						59	4	2	NaN	NaN	NaN	0.76025	1	18381	18381		3.9281	1.0386	1	4348.2			22689	2673	13138	13509	17995	17995					-0.024984678648024783
RSSLQQMAI	9	Unmodified	_RSSLQQMAI_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3|CECR2	REV__nc|ENSG00000099954|Q9BXF3|CECR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5458903784	1	1033.54589	1032.53861	1.615	0.0016691	-8.6956	-0.0089873	-7.0806	-0.0073182	1033.5355911870101	24.623	0.096516	24.61	24.538	24.634	-0.012394	192	52	1.5050892	0.030148864	1.5035697	305.44983	0	6.118561						71	5	2	NaN	NaN	NaN	0.41766	1	9679	9679		13.003	0.95414	1	5029.4	+		22690	8780	13139	13510	17996	17996					0.02364614940051979
RSSPVLVG	8	Unmodified	_RSSPVLVG_					0	0	0			REV__ENST00000167106.8_2_14:77228543-77228681:+|nuORF	REV__ENST00000167106.8_2_14:77228543-77228681:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.4781283892002	1	814.478128	813.470852	0.029915	2.4366E-05	-4.449	-0.0036236	-4.4191	-0.0035993	814.4740917591573	57.163	0.072124	57.162	57.138	57.21	-0.00053787	303	49	1.4393384	0.028494716	1.437819	293.14087	0	5.8033447						88	4	3	NaN	NaN	NaN	0.84727	1	4830	4830		1.2418	0	1	7070.3	+		22691	8801	13140	13511	17997	17997					0.05665533071578466
RSVKGAGG	8	Unmodified	_RSVKGAGG_					0	0	0		ENST00000252288.7_2_19:1399870-1401344:-|nuORF	ENST00000252288.7_2_19:1399870-1401344:-|nuORF	ENST00000252288.7_2_19:1399870-1401344:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.4158624834002	1	731.415862	730.408586	0.53604	0.00039206	-0.33414	-0.0002444	0.20189	0.00014767	731.4151890878874	35.144	0.072422	35.144	35.12	35.192	0	696	40	1.2044523	0.023471475	1.2044523	245.76581	0	4.7892914						70	4	2	NaN	NaN	NaN	0.84512	1	3758	3758		2.4615	1.2197	1	5206.5			22692	6277	13141	13512	17998	17998					0.032598067232470385
RSVLTALL	8	Unmodified	_RSVLTALL_					0	0	0		ENSG00000145107|ENST00000273695|TM4SF19	ENSG00000145107|ENST00000273695|TM4SF19	ENSG00000145107|ENST00000273695|TM4SF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5563787102002	1	872.556379	871.549102	-0.64786	-0.00056529	2.1445	0.0018712	1.4966	0.0013059	872.557985032755	56.155	0.19208	56.154	56.058	56.25	-0.00056458	321	52	1.4286518	0.03028369	1.4271324	290.6422	0	6.160858						165	9	2	NaN	NaN	NaN	0.84692	1	5553	5553		1.4396	0	1	12970			22693	3504	13142	13513	17999	17999					0.10818965656812907
RTAAIAFVLSW	11	Unmodified	_RTAAIAFVLSW_					0	0	0		ENST00000374409.5_1_1:24684664-24685051:-|nuORF	ENST00000374409.5_1_1:24684664-24685051:-|nuORF	ENST00000374409.5_1_1:24684664-24685051:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.2362740361	3	412.236274	1233.68699	1.5271	0.00062952	-2.9517	-0.0012168	-1.4246	-0.00058727	412.2349556862407	22.38	0.21684	22.38	22.308	22.525	0	1431	61	0.75620437	0.037077844	0.75620437	459.4039	0	22.525269						195	10	3	NaN	NaN	NaN	0.69801	1	17370	17370		3.3044	1.4542	1	22584			22694	6688	13143	13514	18000	18000					0.07949669185404673
RTEEDEPEPEP	11	Unmodified	_RTEEDEPEPEP_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.19312788576667	3	443.193128	1326.55755	1.3474	0.00059717	-1.0571	-0.00046851	0.29029	0.00012866	443.1923337869966	11.718	0.12006	11.71	11.662	11.782	-0.0081854	1488	31	0.7209441	0.018577218	0.71942466	437.6439	0	11.27713						69	6	2	NaN	NaN	NaN	0.76488	1	18339	18339		2.0359	0	1	5547.2	+		22695	10366	13144	13515	18001	18001					-0.09266221745838266
RTEEPILDPYV	11	Unmodified	_RTEEPILDPYV_					0	0	0			REV__XRN2|p.T670I|1|0.14|ENSG00000088930|chr20:21354861-21354861|C/T|missense_variant	REV__XRN2|p.T670I|1|0.14|ENSG00000088930|chr20:21354861-21354861|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.3457172327	2	666.345717	1330.67688	1.1037	0.00073543	-0.62693	-0.00041776	0.47674	0.00031767	666.3457384329679	41.953	0.11995	41.962	41.914	42.034	0.0089951	1074	37	0.9754029	0.021962345	0.97388345	394.7313	0	8.887848						106	6	2	NaN	NaN	NaN	0.59385	1	18407	18407		14.425	3.2547	1	9861.1	+		22696	13649	13145	13516	18002	18002					0.02477016669513432
RTEHDQVRT	9	Unmodified	_RTEHDQVRT_					0	0	0		ENST00000485274.1_1_1:217671646-217783710:-|nuORF	ENST00000485274.1_1_1:217671646-217783710:-|nuORF	ENST00000485274.1_1_1:217671646-217783710:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.1951375029	3	381.195138	1140.56358	1.5994	0.00060968	-6.496	-0.0024762	-4.8966	-0.0018666	381.1928530456719	19.516	0.12001	19.516	19.492	19.612	0	1527	37	0.69677675	0.022321641	0.69677675	423.68243	0	13.572937						91	6	2	NaN	NaN	NaN	0.46215	1	14462	14462		7.1304	1.6804	1	9998.4			22697	7232	13146	13517	18003	18003					-0.0010761393300526834
RTEPRYCSGLG	11	Unmodified	_RTEPRYCSGLG_					0	0	0		ENST00000489951.1_1_7:149427187-149427675:+|nuORF;nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	ENST00000489951.1_1_7:149427187-149427675:+|nuORF	ENST00000489951.1_1_7:149427187-149427675:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.5363948060666	3	413.536395	1237.58736	1.6413	0.00067874	3.802	0.0015723	5.4433	0.002251	413.53814234007825	10.639	0.095873	10.632	10.584	10.68	-0.0071888	1494	31	0.7172283	0.018581212	0.71570885	435.7102	0	11.287933						63	5	2	NaN	NaN	NaN	0.66717	1	16734	16734		4.5433	0	1	5284.6			22698	2828	13147	13518	18004	18004					-0.02193516490865477
RTGDGIVQKL	10	Unmodified	_RTGDGIVQKL_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	362.8803788245333	3	362.880379	1085.61931	2.2867	0.0008298	0.72483	0.00026303	3.0115	0.0010928	362.88087018667915	16.227	0.19182	16.214	16.142	16.334	-0.012995	1413	37	0.7673241	0.022232234	0.76580465	466.8609	0	13.526703						136	9	3	NaN	NaN	NaN	0.60686	1	11905	11905		8.3538	0	1	12614			22699	3790	13148	13519	18005	18005					0.07992219254606425
RTHLKEKPF	9	Unmodified	_RTHLKEKPF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.8926187769667	3	385.892619	1154.65603	1.911	0.00073746	7.5521	0.0029143	9.4632	0.0036518	385.89509294632643	23.151	0.12059	23.138	23.09	23.21	-0.013294	1380	31	0.7876915	0.018504798	0.78617203	478.89432	0	11.250397						81	6	2	NaN	NaN	NaN	0.49999	1	14487	14487		6.1406	1.8305	1	6867.3			22700	2671	13149	13520	18006	18006					0.08488515871181335
RTHSMTIRCFV	11	Unmodified	_RTHSMTIRCFV_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.8420988965	2	675.842099	1349.66964	0.94231	0.00063685	-0.59828	-0.00040435	0.34402	0.00023251	675.8418492868659	24.623	0.12056	24.61	24.586	24.707	-0.012394	1107	82	0.9552588	0.049476504	0.9537394	386.52338	0	20.019562						190	6	3	NaN	NaN	NaN	0.72342	1	18665	18665		5.9198	0.46985	1	14431			22701	6446	13150	13521	18007	18007					0.008796823164402667
RTHSMTIRCFV	11	Unmodified						0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	675.842099	1349.66964	1.0655	0.00072008	-0.47689	-0.0003223	0.58856	0.00039777	675.841289219309	24.623	0.14474	24.623	24.574	24.719	0	1104	76	0.9570911	0.045821548	0.9570911	387.26477		18.540619	0.0062524	7.2224E-05	0.0016759	NaN	5.9198	220	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16099			22702	6446	13150	13521							0.008796823164402667
RTITGRCN	8	Unmodified	_RTITGRCN_					0	0	0		EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant;ENSG00000121053|ENST00000225371|EPX	EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant	EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4730597863	1	920.47306	919.465783	1.8383	0.0016921	2.1741	0.0020012	4.0123	0.0036932	920.4753160594923	24.96	0.1448	24.96	24.936	25.081	0	354	109	1.4090419	0.06425655	1.4090419	286.42062	0	13.0616455						404	7	4	NaN	NaN	NaN	0.80692	1	6407	6407		8.2903	0.74991	1	83235			22703	2284	13151	13522	18008	18008					0.0028290593729707325
RTKPLMYIE	9	Unmodified	_RTKPLMYIE_					0	0	0			REV__ENST00000549963.1_1_12:110906141-110906465:-|nuORF	REV__ENST00000549963.1_1_12:110906141-110906465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.81808409645	2	575.818084	1149.62162	2.0275	0.0011675	7.008	0.0040353	9.0355	0.0052028	576.3244435509837	18.844	0.12	18.844	18.82	18.94	0	1212	55	0.8910048	0.0331074	0.8910048	361.15967	0	13.419739						185	6	4	NaN	NaN	NaN	0.48181	1	14803	14803		10.36	2.0826	1	19376	+		22704	12732	13152	13523	18009	18009					0.05278931668044606
RTKRSALVRR	10	Unmodified	_RTKRSALVRR_					0	0	0		nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7	nc|ENSG00000101665|O15105-3|SMAD7	nc|ENSG00000101665|O15105-3|SMAD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1242.7865468513999	1	1242.78655	1241.77927	1.7952	0.0022311	-1.4982	-0.0018619	0.29707	0.00036919	1243.7878383392053	35.048	0.096508	35.048	34.999	35.096	0	69	55	1.5776473	0.031785727	1.5776473	319.46304	0	6.4364014						151	5	4	NaN	NaN	NaN	0.78146	1	17580	17580		0.16111	0	1	11660			22705	1343	13153	13524	18010	18010					0.16805192042284034
RTKRSALVRR	10	Unmodified						0	0	0		nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7	nc|ENSG00000101665|O15105-3|SMAD7	nc|ENSG00000101665|O15105-3|SMAD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1242.78655	1241.77927	1.4649	0.0018206	1.1862	0.0014742	2.6512	0.0032948	1243.7888707269353	35.046	0.096539	35.046	34.998	35.094	-4.5776E-05	66	49	1.579413	0.028250933	1.5778936	319.8206		5.7206116	-0.00073672	0.001556	0.00012317	NaN	0.16111	142	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10702			22706	1343	13153	13524							0.16805192042284034
RTKTKELKDY	10	Unmodified	_RTKTKELKDY_					0	0	0			REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3617016479001	2	641.361702	1280.70885	2.4006	0.0015397	-0.93231	-0.00059795	1.4683	0.00094171	641.8626671390489	40.006	0.45681	40.012	39.988	40.444	0.0060463	1227	103	0.88180584	0.062570035	0.8802864	356.997	0	25.33133						810	20	2	NaN	NaN	NaN	0.73444	1	17618	17618		5.6942	0.50528	1	821240	+		22707	8811	13154	13525	18011	18011					0.0797242914331946
RTKTTKTK	8	Unmodified	_RTKTTKTK_					0	0	0			REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF	REV__ENST00000396020.7_1_14:50043976-50044102:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.5945551305001	1	963.594555	962.587279	0.81273	0.00078314	-1.5931	-0.0015351	-0.78035	-0.00075194	963.5943188688004	53.713	0.040733	53.712	53.671	53.712	-0.00059128	789	31	1.1483859	0.01811409	1.1468664	233.2819	0	3.679657						32	2	2	NaN	NaN	NaN	0.84945	1	7260	7260		0	0	1	2100.3	+		22708	12011	13155	13526	18012	18012					0.10448851571470641
RTKVKTIKMF	10	Unmodified	_RTKVKTIKMF_					0	0	0		ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	ENSG00000183150|ENST00000651487|GPR19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3839255339501	2	626.383926	1250.7533	0.87932	0.00055079	5.6182	0.0035192	6.4975	0.00407	626.3877476011924	40.897	0.096039	40.897	40.825	40.921	0	1224	58	0.883646	0.034978867	0.883646	357.83337	0	14.164703						94	5	2	NaN	NaN	NaN	0.77928	1	17794	17794		0.69115	0.093923	1	7715.2			22709	5297	13156	13527	18013	18013					0.13795161755820118
RTLESLLAH	9	Unmodified	_RTLESLLAH_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000497908.1_1_3:49843433-49843589:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2983731096	2	520.298373	1038.58219	1.7395	0.00090505	4.3498	0.0022632	6.0893	0.0031682	520.3005692236987	26.239	0.19303	26.228	26.107	26.3	-0.011137	1260	67	0.8615505	0.040521502	0.8600311	349.66287	0	16.44577						244	9	2	NaN	NaN	NaN	0.39244	1	9953	9953		14.042	0.57854	1	28347			22710	5255	13157	13528	18014	18014					0.064445477088384
RTLFLFGVT	9	Unmodified	_RTLFLFGVT_					0	0	0		ENST00000593983.5_1_19:43519347-43523525:-|nuORF;nc|ENSG00000243130|Q9UQ72-2|PSG11;ENST00000597009.5_1_19:43236759-43244536:-|nuORF;ENSG00000243130|ENST00000320078|PSG11;ENSG00000242221|ENST00000406487|PSG2;ENSG00000221826|ENST00000327495|PSG3	ENST00000593983.5_1_19:43519347-43523525:-|nuORF	ENST00000593983.5_1_19:43519347-43523525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.3082095144001	2	527.30821	1052.60187	2.1571	0.0011374	5.426	0.0028612	7.5831	0.0039986	527.311222298027	16.443	0.047958	16.43	16.43	16.478	-0.012995	1254	37	0.8652351	0.022104979	0.86371565	351.09708	0	8.969849						47	3	2	NaN	NaN	NaN	0.60736	1	10535	10535		5.1889	0	1	4027.3			22711	6006	13158	13529	18015	18015					0.07766923719623264
RTLLIELLPW	10	Unmodified	_RTLLIELLPW_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3844484627001	2	627.384448	1252.75434	0.83086	0.00052127	-3.6995	-0.002321	-2.8686	-0.0017997	627.8832934866736	40.486	0.16824	40.493	40.445	40.613	0.0067596	1203	64	0.8965218	0.038623214	0.89500237	363.04114	0	15.640228						254	8	3	NaN	NaN	NaN	0.76548	1	17083	17083		3.5698	0.35817	1	60044			22712	2771	13159	13530	18016	18016					0.13807699396375028
RTLLIELLPW	10	Unmodified	_RTLLIELLPW_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3844484627001	2	627.384448	1252.75434	1.6732	0.0010497	-3.605	-0.0022617	-1.9318	-0.001212	627.3825355682657	39.885	0.43312	39.891	39.867	40.3	0.0060463	1194	109	0.902037	0.06623632	0.9005176	365.2745	0	26.821991						1095	19	2	NaN	NaN	NaN	0.72631	1	17085	17085		6.2502	3.0386	1	932740			22713	2771	13159	13530	18017	18017					0.13807699396375028
RTLLIELLPW	10	Unmodified						0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.384448	1252.75434	1.3933	0.00087413	-4.2699	-0.0026789	-2.8766	-0.0018047	627.3819465209558	39.983	0.45691	39.983	39.959	40.416	0	1197	106	0.9001988	0.0643999	0.9001988	364.53012		26.07837	0.046134	-0.0003604	-0.00015938	NaN	6.2502	1022	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693220			22714	2771	13159	13530							0.13807699396375028
RTLLIELLPW	10	Unmodified						0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.384448	1252.75434	0.84591	0.00053071	-3.0383	-0.0019062	-2.1923	-0.0013754	627.3822519821139	40.464	0.048149	40.464	40.44	40.488	0	1203	82	0.8965218	0.049679935	0.8965218	363.04114		20.117584	-0.014389	0.00063913	0.00075972	NaN	3.5698	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21345			22715	2771	13159	13530							0.13807699396375028
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.21201703189996	3	384.212017	1149.61422	2.0114	0.00077279	-2.9888	-0.0011483	-0.97743	-0.00037554	384.21096182543124	18.796	0.048023	18.796	18.772	18.82	0	1527	37	0.69677675	0.022324085	0.69677675	423.64264	0	13.57312						44	3	2	NaN	NaN	NaN	0.56377	1	14795	14795		6.6174	0.69763	1	3907			22716	4112	13160	13531	18018	18018					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.81438731455	2	575.814387	1149.61422	2.0737	0.0011941	-1.0801	-0.00062194	0.99361	0.00057213	575.814177683161	18.796	0.048023	18.796	18.772	18.82	0	1197	46	0.9001988	0.02757907	0.9001988	364.8864	0	11.178894						87	3	3	NaN	NaN	NaN	0.33629	1	14796	14796		16.584	4.5355	1	14595			22717	4112	13160	13531	18019	18019					0.04539915391978866
RTNATAIVSF	10	Unmodified	_RTNATAIVSF_					0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.53297910263336	3	360.532979	1078.57711	1.8547	0.00066866	2.7206	0.00098088	4.5753	0.0016495	360.53386965579426	17.069	0.072041	17.069	17.045	17.117	0	1503	46	0.711653	0.027873337	0.711653	433.02444	0	16.960297						75	4	3	NaN	NaN	NaN	0.77729	1	11922	11922		0.43218	0	1	5604.8	+		22718	13427	13161	13532	18020	18020					0.04096243846242942
RTNATAIVSF	10	Unmodified						0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	360.532979	1078.57711	1.8547	0.00066866	2.7206	0.00098088	4.5753	0.0016495	360.53386965579426	17.069	0.072041	17.069	17.045	17.117	0	1503	46	0.711653	0.027873337	0.711653	433.02444		16.960297	-0.063502	4.0475E-05	0.00075972	NaN	0.43218	75	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5604.8	+		22719	13427	13161	13532							0.04096243846242942
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.8154499470501	2	655.81545	1309.61635	1.4127	0.00092644	-0.9718	-0.00063732	0.44085	0.00028912	655.8146813898896	16.518	0.095865	16.518	16.47	16.566	0	1137	37	0.9369253	0.022012115	0.9369253	379.22266	0	8.909454						113	5	3	NaN	NaN	NaN	0.42273	1	18928	18928		21.237	7.7741	1	11683			22720	2701	13162	13533	18021	18021					-0.026076558702015973
RTNPNSGDFRF	11	Unmodified	_RTNPNSGDFRF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.8154499470501	2	655.81545	1309.61635	1.4443	0.00094719	-2.0102	-0.0013183	-0.56586	-0.0003711	655.8135228547703	16.611	0.26372	16.598	16.502	16.765	-0.012993	1137	34	0.9369253	0.020176709	0.93540585	379.22266	0	8.166565						150	12	3	NaN	NaN	NaN	0.61751	1	18094	18094		12.872	0.82339	1	14249			22721	2701	13162	13533	18022	18022					-0.026076558702015973
RTPAGGKG	8	Unmodified	_RTPAGGKG_					0	0	0		nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;chr1:24319941-24331426|475|14.47|0.52|4.79|+|ENST00000524724|GRHL3,GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.4158624834001	1	743.415862	742.408586	0.95397	0.0007092	-3.7361	-0.0027775	-2.7821	-0.0020683	743.413528456854	37.723	0.072182	37.723	37.699	37.771	0	564	37	1.2837118	0.021567822	1.2837118	261.86057	0	4.3995667						53	4	2	NaN	NaN	NaN	0.83211	1	3955	3955		4.9097	0	1	2931.3			22722	112	13163	13534	18023	18023					0.027078067232423564
RTPAGGKG	8	Unmodified						0	0	0		nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;chr1:24319941-24331426|475|14.47|0.52|4.79|+|ENST00000524724|GRHL3,GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	743.415862	742.408586	2.0085	0.0014931	-6.162	-0.0045809	-4.1536	-0.0030878	743.4110490171759	37.72	0.072086	37.723	37.699	37.771	0.0028229	564	43	1.2837118	0.025159717	1.2821923	261.86057		5.1322327	0.00013188	-0.00081622	-0.00075972	NaN	4.9097	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3941			22723	112	13163	13534							0.027078067232423564
RTRFKYYFY	9	Unmodified	_RTRFKYYFY_					0	0	0			REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3483973074001	2	672.348397	1342.68224	1.1867	0.00079788	-4.2735	-0.0028733	-3.0868	-0.0020754	672.3450717888596	24.502	0.36188	24.489	24.32	24.682	-0.012747	1416	73	0.76547134	0.044474125	0.7639519	309.7466	0	17.996368						515	16	3	NaN	NaN	NaN	0.68845	1	18586	18586		0.19249	0.031377	1	85185	+		22724	8461	13164	13535	18024	18024					0.024607850426491495
RTRFKYYFY	9	Unmodified						0	0	0			REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	672.348397	1342.68224	1.0849	0.00072942	-6.5949	-0.004434	-5.51	-0.0037046	672.3440946940785	24.285	0.096519	24.285	24.285	24.381	0	1419	52	0.76361835	0.031504214	0.76361835	308.9968		12.748108	-0.10209	-0.0026928	-0.00016677	NaN	0.19249	125	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21023	+		22725	8461	13164	13535							0.024607850426491495
RTRFKYYFY	9	Unmodified						0	0	0			REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	REV__nc|ENSG00000040487|Q6ZP29-2|SLC66A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.348397	1342.68224	1.1867	0.00079788	-4.2735	-0.0028733	-3.0868	-0.0020754	672.3450717888596	24.502	0.36188	24.489	24.32	24.682	-0.012747	1416	73	0.76547134	0.044474125	0.7639519	309.7466		17.996368	0.10209	0.00042869	0.00016677	NaN	0.19249	515	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85185	+		22726	8461	13164	13535							0.024607850426491495
RTRFYYWKRLQ	11	Unmodified	_RTRFYYWKRLQ_					0	0	0			REV__ENST00000483733.1_1_3:120424930-120428703:-|nuORF	REV__ENST00000483733.1_1_3:120424930-120428703:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.6317980334334	3	539.631798	1615.87356	2.5164	0.0013579	-2.2593	-0.0012192	0.25711	0.00013875	539.6300204704881	19.683	0.072201	19.669	19.621	19.693	-0.014141	1338	22	0.81357855	0.012933016	0.8120591	492.96548	0	7.8363953						37	4	2	NaN	NaN	NaN	0.77891	1	19742	19742		0.43218	0.29527	1	2184.9	+		22727	12402	13165	13536	18025	18025					0.09026286073753909
RTSAGVGA	8	Unmodified	_RTSAGVGA_					0	0	0		ENST00000538595.1_1_11:63916459-63933466:-|nuORF;ENST00000545464.5_1_11:63767582-63933466:-|nuORF;MACROD1-BAD|1|fusion;MACROD1-TCN1|1|fusion;ENSG00000133315|ENST00000255681|MACROD1	ENST00000538595.1_1_11:63916459-63933466:-|nuORF	ENST00000538595.1_1_11:63916459-63933466:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.384228004	1	718.384228	717.376952	1.7768	0.0012764	-6.1988	-0.0044531	-4.422	-0.0031767	718.3800189538174	23.175	0.072403	23.162	23.114	23.186	-0.013294	627	61	1.24593	0.036019325	1.2444105	254.3143	0	7.352127						87	4	2	NaN	NaN	NaN	0.84455	1	3481	3481		2.7852	0	1	6382.5			22728	2821	13166	13537	18026	18026					0.006958139692756049
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.54387813993327	3	387.543878	1159.60981	1.8451	0.00071507	0.011717	4.5408E-06	1.8569	0.00071961	387.5429878881483	11.716	0.072062	11.716	11.668	11.74	0	1512	25	0.7060759	0.014874637	0.7060759	429.25278	0	9.042908						51	4	2	NaN	NaN	NaN	0.60736	1	15136	15136		2.9701	1.6004	1	3701.8			22729	1043	13167	13538	18027	18027					0.03638450969060614
RTSEIYVHR	9	Unmodified						0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	387.543878	1159.60981	1.5604	0.00060474	-3.259	-0.001263	-1.6986	-0.00065829	387.54301563820377	11.862	0.1681	11.854	11.782	11.95	-0.0081863	1509	31	0.70793515	0.018593311	0.7064157	430.38312		11.303619	0.069001	-0.0017142	0.0001699	NaN	2.9701	77	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6115.4			22730	1043	13167	13538							0.03638450969060614
RTSITDMEL	9	Unmodified	_RTSITDMEL_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5244862343	1	1065.52449	1064.51721	1.0241	0.0010912	-2.9836	-0.0031791	-1.9595	-0.0020879	1065.5207956499376	27.446	0.12063	27.436	27.411	27.532	-0.010126	144	76	1.533442	0.044252038	1.5319226	311.08063	0	8.977173						149	6	2	NaN	NaN	NaN	0.33629	1	11064	11064		16.584	1.4088	1	16556			22731	4720	13168	13539	18028	18028					-0.01246814879300473
RTTTGSTREPT	11	Unmodified	_RTTTGSTREPT_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.8739525315	3	402.873953	1205.60003	1.4212	0.00057256	-0.59948	-0.00024151	0.82171	0.00033105	402.87394465604484	19.3	0.21605	19.3	19.228	19.444	0	1482	58	0.72465914	0.035290897	0.72465914	440.35306	0	21.44516						411	10	5	NaN	NaN	NaN	0.54514	1	16623	16623		9.0037	0	1	103010			22732	6146	13169	13540	18029	18029					0.005452181730333905
RTYLITAGSL	10	Unmodified	_RTYLITAGSL_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.8138559983001	2	547.813856	1093.61316	1.3166	0.00072125	4.2794	0.0023443	5.596	0.0030656	547.8164718102926	26.674	0.09655	26.674	26.65	26.746	0	1200	67	0.89836043	0.040455878	0.89836043	364.36215	0	16.408325						135	5	3	NaN	NaN	NaN	0.65442	1	12578	12578		11.17	2.88	1	19598	+		22733	10452	13170	13541	18030	18030					0.0700970102309384
RVCGGLAG	8	Unmodified	_RVCGGLAG_					0	0	0		nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-6|PNCK	nc|ENSG00000130822|Q6P2M8-6|PNCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.382119514	1	732.38212	731.374843	1.2088	0.00088528	-4.8225	-0.0035319	-3.6137	-0.0026466	732.3785706696954	30.1	0.12067	30.094	30.045	30.166	-0.0064106	672	46	1.2188909	0.027059317	1.2173715	248.70593	0	5.5212555						101	6	2	NaN	NaN	NaN	0.84692	1	3696	3696		1.4396	0	1	9186.8			22734	7944	13171	13542	18031	18031					-0.0015893804018105584
RVCWMRVWSQL	11	Unmodified	_RVCWMRVWSQL_					0	0	0			REV__ENSG00000214681|ENST00000446461|IQCF5	REV__ENSG00000214681|ENST00000446461|IQCF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3735662004001	2	732.373566	1462.73258	1.1913	0.0008725	0.87583	0.00064143	2.0672	0.0015139	732.3742224108122	29.425	0.16896	29.425	29.377	29.546	0	1026	61	1.0046607	0.036529005	1.0046607	406.19406	0	14.769043						206	8	3	NaN	NaN	NaN	0.6085	1	20444	20444		13.463	0	1	20103	+		22735	11293	13172	13543	18032	18032					0.019722481044937012
RVEEEEERCQ	10	Unmodified	_RVEEEEERCQ_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.7882405310501	2	653.788241	1305.56193	0.69352	0.00045342	-2.0398	-0.0013336	-1.3463	-0.00088019	653.7872999112586	33.383	0.024124	33.383	33.359	33.383	0	1134	58	0.9387595	0.034843147	0.9387595	379.9774	0	14.1032715						52	2	2	NaN	NaN	NaN	0.77348	1	18859	18859		2.1026	0.17793	1	4059.9			22736	1231	13173	13544	18033	18033					-0.07863035803916318
RVEEEEERCQ	10	Unmodified	_RVEEEEERCQ_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.7882405310501	2	653.788241	1305.56193	0.73089	0.00047784	2.1505	0.0014059	2.8814	0.0018838	654.2900439221919	33.311	0.048275	33.311	33.262	33.311	0	1134	31	0.9387595	0.018339515	0.9387595	379.97736	0	7.4231873						50	3	2	NaN	NaN	NaN	0.77348	1	18863	18863		2.1026	0.17793	1	3568.6			22737	1231	13173	13544	18034	18034					-0.07863035803916318
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.31148048485	2	608.31148	1214.60841	1.3414	0.00081599	-4.2666	-0.0025954	-2.9252	-0.0017794	608.3076771652823	19.204	0.35996	19.204	19.084	19.444	0	1188	82	0.90571284	0.049594104	0.90571284	366.88855	0	20.089722						390	16	2	NaN	NaN	NaN	0.41241	1	16844	16844		23.086	11.915	1	50503			22738	2055	13174	13545	18035	18035					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.87674581209995	3	405.876746	1214.60841	1.2673	0.00051436	-1.8241	-0.00074036	-0.55682	-0.000226	405.87608420699405	19.228	0.071985	19.228	19.18	19.252	0	1410	34	0.76917666	0.02037841	0.76917666	467.3658	0	12.382294						70	4	2	NaN	NaN	NaN	0.37681	1	16846	16846		19.592	9.3482	1	8162.9			22739	2055	13174	13545	18036	18036					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.31148048485	2	608.31148	1214.60841	1.0821	0.00065828	-4.7117	-0.0028662	-3.6295	-0.0022079	608.3075132611896	19.346	0.19224	19.332	19.26	19.452	-0.014141	1188	79	0.90571284	0.047765017	0.9041934	366.88855	0	19.348785						382	9	3	NaN	NaN	NaN	0.4422	1	16175	16175		21.85	12.931	1	45775			22740	2055	13174	13545	18037	18037					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.87674581209995	3	405.876746	1214.60841	2.3847	0.00096788	-5.8938	-0.0023921	-3.5091	-0.0014243	405.8747944839477	19.322	0.048059	19.308	19.26	19.308	-0.014141	1410	25	0.76917666	0.014823079	0.7676573	467.36584	0	9.006805						35	3	2	NaN	NaN	NaN	0.039609	1	16176	16176		45.55	28.891	1	2434.8			22741	2055	13174	13545	18038	18038					0.009688168803222652
RVFPEECYMEL	11	Unmodified	_RVFPEECYMEL_					0	0	0			REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF	REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3203306116501	2	708.320331	1414.62611	0.41578	0.00029451	8.765	0.0062084	9.1808	0.0065029	708.3262876045013	31.741	0.12073	31.737	31.712	31.833	-0.0044155	1044	61	0.99369496	0.03657633	0.9921755	401.88843	0	14.792877						116	6	3	NaN	NaN	NaN	0.77378	1	19225	19225		1.3312	0.29113	1	9598.2	+		22742	10761	13175	13546	18039	18039					-0.06461971971339153
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3193055169501	2	615.319306	1228.62406	1.6021	0.00098577	-2.3022	-0.0014166	-0.70018	-0.00043084	615.3173245679261	18.772	0.23997	18.772	18.676	18.916	0	1167	67	0.91857195	0.040407836	0.91857195	372.04987	0	16.366425						326	11	3	NaN	NaN	NaN	0.05475	1	17212	17212		52.195	34.225	1	42547			22743	3760	13176	13547	18040	18040					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.54862916683334	3	410.548629	1228.62406	1.8876	0.00077495	-1.9445	-0.00079831	-0.056905	-2.3362E-05	410.5477049352055	18.748	0.19198	18.748	18.676	18.868	0	1398	64	0.77658504	0.03890854	0.77658504	471.8069	0	23.638489						116	9	2	NaN	NaN	NaN	0.52943	1	17213	17213		11.467	1.8967	1	11169			22744	3760	13176	13547	18041	18041					0.018891033973659432
RVFPEKGYSF	10	Unmodified	_RVFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3193055169501	2	615.319306	1228.62406	1.1213	0.00068995	-1.5862	-0.00097601	-0.46489	-0.00028606	615.3184604106402	18.914	0.19226	18.9	18.828	19.02	-0.014059	1167	58	0.91857195	0.034892023	0.9170525	372.04984	0	14.132355						324	9	4	NaN	NaN	NaN	0.43797	1	16512	16512		22.026	2.9075	1	38365			22745	3760	13176	13547	18042	18042					0.018891033973659432
RVFSDIMPT	9	Unmodified	_RVFSDIMPT_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2735094173001	2	533.273509	1064.53247	0.55931	0.00029827	-5.4657	-0.0029147	-4.9064	-0.0026164	533.2699322876535	30.414	0.24127	30.407	30.214	30.456	-0.0064106	1266	88	0.85786515	0.053417623	0.8563457	348.05615	0	21.67279						317	11	2	NaN	NaN	NaN	0.47587	1	11067	11067		10.605	0	1	33869	+		22746	8909	13177	13548	18043	18043					0.0027809670855276636
RVGAALAA	8	Unmodified	_RVGAALAA_					0	0	0		ENST00000537356.3_1_X:103357254-103357665:+|nuORF	REV__ENSG00000184261|ENST00000327876|KCNK12	REV__ENSG00000184261|ENST00000327876|KCNK12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.4413489524001	1	728.441349	727.434072	-0.23336	-0.00016999	1.2251	0.00089239	0.99171	0.0007224	728.442894065747	53.648	0.072052	53.647	53.599	53.671	-0.00059128	624	52	1.247731	0.030618072	1.2462115	254.61589	0	6.2480164						79	4	2	NaN	NaN	NaN	0.84692	1	3645	3645		1.4396	0	1	7708.4			22747	10916	13178	13549	18044	18044					0.05945281245658407
RVGAALAA	8	Unmodified						0	0	0		ENST00000537356.3_1_X:103357254-103357665:+|nuORF	REV__ENSG00000184261|ENST00000327876|KCNK12	REV__ENSG00000184261|ENST00000327876|KCNK12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	728.441349	727.434072	1.4991	0.001092	-1.2891	-0.00093904	0.20998	0.00015296	728.4397987904626	53.626	0.072174	53.626	53.602	53.674	0	624	40	1.247731	0.023413777	1.247731	254.6159		4.777893	-0.010849	-0.00078266	0.00075972	NaN	1.4396	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6657.1			22748	10916	13178	13549							0.05945281245658407
RVGGGKGP	8	Unmodified	_RVGGGKGP_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4209478613001	1	727.420948	726.413671	-0.22956	-0.00016698	9.1927	0.006687	8.9632	0.00652	727.4267146681769	55.987	0.1921	55.986	55.962	56.154	-0.00059128	612	193	1.2549332	0.11544716	1.2534138	256.09222	0	23.559097						327	9	5	NaN	NaN	NaN	0.84887	1	3630	3630		0.32989	0.32989	1	118140			22749	8012	13179	13550	18045	18045					0.039521105858511874
RVGPTPLLA	9	Unmodified	_RVGPTPLLA_					0	0	0			REV__ENST00000447563.5_1_7:158809599-158810334:+|nuORF	REV__ENST00000447563.5_1_7:158809599-158810334:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475002	1	923.567278	922.560001	1.8451	0.0017041	-1.6569	-0.0015302	0.18828	0.00017389	923.5651268013099	53.924	0.072186	53.924	53.9	53.972	0	333	49	1.4215236	0.028515935	1.4215236	288.94354	0	5.796234						93	4	3	NaN	NaN	NaN	0.65818	1	6459	6459		2.7852	0	1	8314.8	+		22750	12213	13180	13551	18046	18046					0.09562368031095048
RVGRKALERP	10	Unmodified	_RVGRKALERP_					0	0	0			REV__PCDHGA11|p.P363Vfs*30|1|0.07|ENSG00000253873|chr5:141422312-141422313|-/AGTTTGTGAA|frameshift_variant	REV__PCDHGA11|p.P363Vfs*30|1|0.07|ENSG00000253873|chr5:141422312-141422313|-/AGTTTGTGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.57903418143337	3	394.579034	1180.71527	0.54364	0.00021451	-6.5631	-0.0025896	-6.0194	-0.0023751	394.57691174224453	40.104	0.048103	40.104	40.104	40.152	0	1434	43	0.75435036	0.025957286	0.75435036	458.50467	0	15.777191						61	3	2	NaN	NaN	NaN	0.78011	1	15858	15858		0.49077	0.10568	1	6301.9	+		22751	11371	13181	13552	18047	18047					0.13214411885360278
RVGVDRNKY	9	Unmodified	_RVGVDRNKY_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.54035657783334	3	369.540357	1105.59924	2.336	0.00086324	-4.1766	-0.0015434	-1.8406	-0.00068019	369.538828918981	11.236	0.16775	11.236	11.212	11.38	0	1482	28	0.72465914	0.016716719	0.72465914	440.80273	0	10.16861						79	8	2	NaN	NaN	NaN	0.21462	1	13092	13092		24.393	8.9307	1	6408.3			22752	4092	13182	13553	18048	18048					0.05066468314657868
RVGVDRNKY	9	Unmodified	_RVGVDRNKY_					0	0	0		ENSG00000161057|ENST00000292644|PSMC2;nc|ENSG00000161057|P35998-2|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	ENSG00000161057|ENST00000292644|PSMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.54035657783334	3	369.540357	1105.59924	2.452	0.00090611	-2.0088	-0.00074233	0.44322	0.00016379	369.53882818130165	11.164	0.095837	11.164	11.116	11.212	0	1482	31	0.72465914	0.018573165	0.72465914	440.80273	0	11.297852						66	5	2	NaN	NaN	NaN	0.14337	1	13094	13094		29.547	14.693	1	5447.5			22753	4092	13182	13553	18049	18049					0.05066468314657868
RVHEMLDQNL	10	Unmodified	_RVHEMLDQNL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.8166040400001	2	627.816604	1253.61866	1.9999	0.0012556	-10.113	-0.0063489	-8.1127	-0.0050933	627.8111028163873	25.901	0.14478	25.901	25.853	25.998	0	1158	55	0.92408	0.033032417	0.92408	374.1979	0	13.37616						84	7	2	NaN	NaN	NaN	0.71559	1	17869	17869		6.9844	0.36695	1	9615.5	+		22754	9412	13183	13554	18050	18050					0.0019905654326066724
RVHVPGAL	8	Unmodified	_RVHVPGAL_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.5100972196002	1	848.510097	847.502821	1.7797	0.0015101	5.8997	0.005006	7.6794	0.006516	848.5150033617804	58.269	0.023983	58.269	58.269	58.293	0	414	52	1.3733286	0.030390263	1.3733286	279.51047	0	6.1852417						59	2	2	NaN	NaN	NaN	0.84876	1	5360	5360		0.39566	0.065779	1	7609.3	+		22755	9746	13184	13555	18051	18051					0.07296945545374456
RVHVPGAL	8	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	848.510097	847.502821	1.7797	0.0015101	5.8997	0.005006	7.6794	0.006516	848.5150033617804	58.269	0.023983	58.269	58.269	58.293	0	414	52	1.3733286	0.030390263	1.3733286	279.51047		6.1852417	0.0014415	-0.0016991	0.00075972	NaN	0.39566	59	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7609.3	+		22756	9746	13184	13555							0.07296945545374456
RVHVPGAL	8	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	848.510097	847.502821	-0.46276	-0.00039266	10.022	0.0085039	9.5593	0.0081112	848.5184518501136	58.266	0.023949	58.266	58.266	58.29	-0.00048447	414	40	1.3733286	0.02323699	1.3718091	279.51044		4.7294006	-0.0014415	0.0017988	-0.00075972	NaN	0.39566	52	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7092	+		22757	9746	13184	13555							0.07296945545374456
RVINKEHVL	9	Unmodified	_RVINKEHVL_					0	0	0		ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW	ENSG00000203760|ENST00000368328|CENPW	ENSG00000203760|ENST00000368328|CENPW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3352899321501	2	554.33529	1106.65603	0.76671	0.00042502	-2.5903	-0.0014359	-1.8235	-0.0010109	554.333796061285	12.964	0.19216	12.964	12.868	13.06	0	1224	31	0.883646	0.018400967	0.883646	358.34167	0	7.4620667						105	9	2	NaN	NaN	NaN	0.40649	1	13145	13145		13.463	6.4787	1	9872.6			22758	5852	13185	13556	18052	18052					0.10696515871177326
RVINKEHVL	9	Unmodified	_RVINKEHVL_					0	0	0		ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW	ENSG00000203760|ENST00000368328|CENPW	ENSG00000203760|ENST00000368328|CENPW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.8926187769667	3	369.892619	1106.65603	1.2469	0.00046123	-1.5018	-0.00055549	-0.25482	-9.4257E-05	369.89209168634864	12.94	0.28823	12.94	12.844	13.132	0	1479	43	0.72651637	0.025999546	0.72651637	441.92725	0	15.815063						348	13	4	NaN	NaN	NaN	0.032764	1	13146	13146		40.957	30.713	1	67237			22759	5852	13185	13556	18053	18053					0.10696515871177326
RVINKEHVL	9	Unmodified	_RVINKEHVL_					0	0	0		ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW	ENSG00000203760|ENST00000368328|CENPW	ENSG00000203760|ENST00000368328|CENPW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.8926187769667	3	369.892619	1106.65603	2.019	0.00074682	-4.0779	-0.0015084	-2.0589	-0.00076158	370.22548170479837	13.613	0.047926	13.603	13.555	13.603	-0.010098	1479	31	0.72651637	0.018573165	0.7249969	441.92728	0	11.297699						44	3	2	NaN	NaN	NaN	0.33629	1	12774	12774		14.854	5.2424	1	4092.3			22760	5852	13185	13556	18054	18054					0.10696515871177326
RVINKEHVL	9	Unmodified	_RVINKEHVL_					0	0	0		ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW	ENSG00000203760|ENST00000368328|CENPW	ENSG00000203760|ENST00000368328|CENPW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.8926187769667	3	369.892619	1106.65603	1.55	0.00057334	-1.4635	-0.00054136	0.086481	3.1989E-05	370.22620908226787	13.781	0.11989	13.77	13.651	13.77	-0.010672	1479	31	0.72651637	0.018571138	0.7249969	441.92725	0	11.296509						85	6	2	NaN	NaN	NaN	0.23112	1	12775	12775		20.513	10.902	1	13753			22761	5852	13185	13556	18055	18055					0.10696515871177326
RVKFEPMLSL	10	Unmodified	_RVKFEPMLSL_					0	0	0			REV__nc|ENSG00000129317|Q9H0K6-2|PUS7L	REV__nc|ENSG00000129317|Q9H0K6-2|PUS7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.2337646298	3	407.233765	1218.67946	1.132	0.000461	2.888	0.0011761	4.02	0.0016371	407.2351018126797	24.719	0.14478	24.719	24.695	24.84	0	1407	40	0.77102906	0.024080992	0.77102906	468.4738	0	14.6315						174	7	4	NaN	NaN	NaN	0.70538	1	16959	16959		7.6826	0.094995	1	20692	+		22762	9463	13186	13557	18056	18056					0.07887193593501252
RVKSKKVV	8	Unmodified	_RVKSKKVV_					0	0	0		ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.6411113926002	1	943.641111	942.633835	1.7602	0.001661	-1.4342	-0.0013534	0.32593	0.00030756	943.6392516526452	57.957	0.072075	57.957	57.885	57.957	0	219	43	1.4891195	0.02485621	1.4891195	302.58853	0	5.0507812						57	4	2	NaN	NaN	NaN	0.8439	1	6893	6893		3.1533	0	1	3676.4			22763	6114	13187	13558	18057	18057					0.16022336193429965
RVLGLVLAAL	10	Unmodified	_RVLGLVLAAL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.6877272341999	1	1024.68773	1023.68045	2.215	0.0022697	-2.7438	-0.0028116	-0.52884	-0.0005419	1024.6847805163295	53.828	0.072319	53.828	53.779	53.852	0	63	46	1.5811787	0.026483893	1.5811787	320.92838	0	5.375366						132	4	3	NaN	NaN	NaN	0.77832	1	9538	9538		0.92586	0	1	11824	+		22764	10428	13188	13559	18058	18058					0.16955776024690294
RVLGLVSP	8	Unmodified	_RVLGLVSP_					0	0	0			REV__ENST00000539777.5_1_1:168054037-168054433:-|nuORF	REV__ENST00000539777.5_1_1:168054037-168054433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.5301639597001	1	840.530164	839.522887	0.88859	0.00074689	-5.6422	-0.0047424	-4.7536	-0.0039956	840.5255435975185	55.314	0.047939	55.314	55.29	55.338	-0.00061798	393	31	1.3858368	0.017864227	1.3843174	282.0991	0	3.6364136						32	3	2	NaN	NaN	NaN	0.84727	1	5135	5135		1.2418	0	1	1599.7	+		22765	12689	13189	13560	18059	18059					0.09670696485318331
RVMEVFLV	8	Unmodified	_RVMEVFLV_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5597495286002	1	992.55975	991.552473	0.98315	0.00097584	5.2298	0.0051908	6.2129	0.0061667	992.5653778923672	33.334	0.048256	33.331	33.331	33.379	-0.0024757	177	109	1.5139546	0.06384826	1.5124352	307.41632	0	12.964691						190	3	2	NaN	NaN	NaN	0.69898	1	8120	8120		19.118	2.7017	1	17474			22766	1953	13190	13561	18060	18060					0.056358924391588516
RVMEVFLV	8	Unmodified						0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.55975	991.552473	1.3182	0.0013084	4.4696	0.0044363	5.7878	0.0057448	992.5650390520192	33.576	0.096409	33.576	33.528	33.624	0	216	73	1.4908947	0.042569995	1.4908947	302.7339		8.644043	0.12256	-0.00038874	-0.01077	NaN	19.118	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4935.5			22767	1953	13190	13561							0.056358924391588516
RVPNEEDPSL	10	Unmodified	_RVPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2856596648501	2	578.28566	1154.55677	1.7853	0.0010324	-1.1078	-0.00064063	0.67751	0.0003918	578.2855435185947	16.515	0.19176	16.502	16.382	16.574	-0.012993	1275	43	0.85233563	0.02580595	0.8508162	345.46805	0	10.459656						214	9	3	NaN	NaN	NaN	0.039165	1	14467	14467		58.769	25.344	1	28222			22768	1620	13191	13562	18061	18061					-0.014329716042311702
RVPNEEDPSL	10	Unmodified						0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	578.28566	1154.55677	1.856	0.0010733	-3.991	-0.002308	-2.135	-0.0012347	578.2832010466956	16.518	0.14392	16.518	16.518	16.662	0	1272	43	0.854179	0.02580595	0.854179	346.2152		10.459656	0.0080244	-0.0026548	0.0016814	NaN	58.769	140	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14794			22769	1620	13191	13562							-0.014329716042311702
RVPPNIFWA	9	Unmodified	_RVPPNIFWA_					0	0	0			REV__ENST00000371442.3_1_X:119005143-119005305:-|nuORF	REV__ENST00000371442.3_1_X:119005143-119005305:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.3060011764502	2	550.306001	1098.59745	0.69972	0.00038506	5.0846	0.0027981	5.7843	0.0031831	550.3092763645035	33.166	0.072395	33.166	33.166	33.238	0	1221	37	0.885486	0.02208358	0.885486	359.1202	0	8.956268						65	4	2	NaN	NaN	NaN	0.61413	1	12804	12804		4.9097	1.6981	1	5436.6	+		22770	11900	13192	13563	18062	18062					0.05209459296725072
RVPPNIFWA	9	Unmodified						0	0	0			REV__ENST00000371442.3_1_X:119005143-119005305:-|nuORF	REV__ENST00000371442.3_1_X:119005143-119005305:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.306001	1098.59745	0.69972	0.00038506	5.0846	0.0027981	5.7843	0.0031831	550.3092763645035	33.166	0.072395	33.166	33.166	33.238	0	1221	37	0.885486	0.02208358	0.885486	359.1202		8.956268	-0.010161	0.00095179	0.00075972	NaN	4.9097	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5436.6	+		22771	11900	13192	13563							0.05209459296725072
RVPSMQVA	8	Unmodified	_RVPSMQVA_					0	0	0			REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.24201232365004	2	444.242012	886.469472	0.27179	0.00012074	-1.8575	-0.00082516	-1.5857	-0.00070442	444.2412544959247	43.463	0.07201	43.474	43.426	43.498	0.01099	1413	40	0.7673241	0.024086237	0.76580465	312.11887	0	9.797394						75	4	2	NaN	NaN	NaN	0.84455	1	5771	5771		2.7852	0	1	9465.6	+		22772	12324	13193	13564	18063	18063					0.02169575711161542
RVPSMQVA	8	Unmodified						0	0	0			REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	444.242012	886.469472	0.72752	0.0003232	-1.1533	-0.00051237	-0.42582	-0.00018917	444.24193185892807	43.513	0.21597	43.513	43.393	43.609	0	1410	46	0.76917666	0.027788818	0.76917666	312.87244		11.303436	0.019484	0.00027024	0.001686	NaN	2.7852	187	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17877	+		22773	12324	13193	13564							0.02169575711161542
RVPSMQVA	8	Unmodified						0	0	0			REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	REV__ENST00000471463.5_1_6:27219498-27222531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	444.242012	886.469472	0.27179	0.00012074	-1.8575	-0.00082516	-1.5857	-0.00070442	444.2412544959247	43.463	0.07201	43.474	43.426	43.498	0.01099	1413	40	0.7673241	0.024086237	0.76580465	312.11887		9.797394	-0.019484	-0.00035535	-0.001686	NaN	2.7852	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9465.6	+		22774	12324	13193	13564							0.02169575711161542
RVPVLGAL	8	Unmodified	_RVPVLGAL_					0	0	0		ENST00000551041.6_1_12:112844433-112844658:-|nuORF	ENST00000551041.6_1_12:112844433-112844658:-|nuORF	ENST00000551041.6_1_12:112844433-112844658:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.5352493376002	1	824.535249	823.527973	1.997	0.0016466	0.85934	0.00070855	2.8563	0.0023551	824.5369666125437	56.924	0.071987	56.924	56.9	56.972	0	405	55	1.3786905	0.032165885	1.3786905	280.73212	0	6.5496826						159	4	3	NaN	NaN	NaN	0.84876	1	5073	5073		0.39566	0	1	23481			22775	7544	13194	13565	18064	18064					0.10915000347961268
RVQDKYFHI	9	Unmodified	_RVQDKYFHI_					0	0	0		nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2	nc|ENSG00000163995|Q6H8Q1-6|ABLIM2	nc|ENSG00000163995|Q6H8Q1-6|ABLIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.5523736296	3	402.552374	1204.63529	1.3278	0.00053451	-1.9217	-0.00077357	-0.59385	-0.00023906	402.5510133780542	16.686	0.12003	16.686	16.638	16.758	0	1416	31	0.76547134	0.018528879	0.76547134	465.15756	0	11.2595215						98	6	2	NaN	NaN	NaN	0.27608	1	16612	16612		13.949	5.595	1	12016			22776	4281	13195	13566	18065	18065					0.04115925491510097
RVQDKYFHI	9	Unmodified	_RVQDKYFHI_					0	0	0		nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2	nc|ENSG00000163995|Q6H8Q1-6|ABLIM2	nc|ENSG00000163995|Q6H8Q1-6|ABLIM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.5523736296	3	402.552374	1204.63529	2.3047	0.00092776	-3.7204	-0.0014977	-1.4157	-0.00056991	402.55018721281715	17.21	0.071907	17.196	17.172	17.244	-0.013567	1416	34	0.76547134	0.020380676	0.7639519	465.15756	0	12.384796						46	4	2	NaN	NaN	NaN	0.084037	1	15948	15948		28.296	19.942	1	3220.2			22777	4281	13195	13566	18066	18066					0.04115925491510097
RVRLSAAR	8	Unmodified	_RVRLSAAR_					0	0	0			REV__ENST00000400087.7_1_21:27102104-27107872:-|nuORF	REV__ENST00000400087.7_1_21:27102104-27107872:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.79359229295005	2	464.793592	927.572632	-0.54099	-0.00025145	7.0237	0.0032646	6.4828	0.0030131	464.7974232577649	55.194	0.072227	55.193	55.193	55.266	-0.0006218	1308	37	0.83204526	0.022150517	0.8305259	338.21622	0	9.003906						44	4	2	NaN	NaN	NaN	0.84887	1	6421	6421		0.32989	0	1	3701.7	+		22778	12032	13196	13567	18067	18067					0.1059482421399025
RVSALHELEL	10	Unmodified	_RVSALHELEL_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.83003737875	2	583.830037	1165.64552	1.1856	0.00069219	-8.5124	-0.0049698	-7.3268	-0.0042776	583.8251181085412	27.373	0.16894	27.363	27.315	27.484	-0.010126	1158	55	0.92408	0.03305024	0.9225606	374.5054	0	13.394409						147	8	3	NaN	NaN	NaN	0.47445	1	14803	14803		20.513	2.5436	1	27691	+		22779	11313	13197	13568	18068	18068					0.06932488426082273
RVSVLLLV	8	Unmodified	_RVSVLLLV_					0	0	0			REV__ENST00000305943.7_2_1:228675067-228675130:+|nuORF	REV__ENST00000305943.7_2_1:228675067-228675130:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.6084142807003	1	898.608414	897.601138	0.33048	0.00029697	1.4175	0.0012738	1.748	0.0015708	898.6096582158061	58.938	0.07193	58.938	58.866	58.938	-0.00045395	270	34	1.458913	0.01955998	1.4573935	296.6646	0	3.9774475						48	4	2	NaN	NaN	NaN	0.84945	1	5919	5919		0	0	1	3641.7	+		22780	11674	13198	13569	18069	18069					0.14824129070586878
RVTQRYHQY	9	Unmodified	_RVTQRYHQY_					0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.8230780139	2	625.823078	1249.6316	1.7627	0.0011032	1.6249	0.0010169	3.3876	0.00212	625.8237794828912	23.538	0.09634	23.538	23.513	23.61	0	1125	46	0.9442611	0.027507722	0.9442611	382.38327	0	11.139374						75	5	2	NaN	NaN	NaN	0.60736	1	17771	17771		5.1889	0.45981	1	7755.9	+		22781	9408	13199	13570	18070	18070					0.016772557176409464
RVTQRYHQY	9	Unmodified						0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	625.823078	1249.6316	1.7627	0.0011032	1.6249	0.0010169	3.3876	0.00212	625.8237794828912	23.538	0.09634	23.538	23.513	23.61	0	1125	46	0.9442611	0.027507722	0.9442611	382.38327		11.139374	-0.065587	0.00034696	0.0016765	NaN	5.1889	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7755.9	+		22782	9408	13199	13570							0.016772557176409464
RVTQRYHQY	9	Unmodified						0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	625.823078	1249.6316	1.8043	0.0011291	0.99275	0.00062129	2.797	0.0017504	625.8230787723026	23.682	0.096346	23.669	23.645	23.741	-0.013048	1128	31	0.9424274	0.018337488	0.94090796	381.64072		7.425873	0.065587	-0.00044422	-0.0016765	NaN	5.1889	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4745.1	+		22783	9408	13199	13570							0.016772557176409464
RVTYEEEWRRK	11	Unmodified	_RVTYEEEWRRK_					0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.4049634460999	2	776.404963	1550.79537	2.1772	0.0016904	-11.918	-0.0092531	-9.7406	-0.0075627	776.3962553521825	23.392	0.072395	23.379	23.355	23.427	-0.013296	942	34	1.055741	0.020038128	1.0542215	426.6191	0	8.0972595						111	4	4	NaN	NaN	NaN	0.75376	1	19673	19673		3.9281	0.34868	1	8627.5	+		22784	8397	13200	13571	18071	18071					0.04200808697873981
RVTYEEEWRRK	11	Unmodified						0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	776.404963	1550.79537	2.0254	0.0015725	-12.172	-0.0094507	-10.147	-0.0078781	776.3962431306203	23.369	0.072275	23.369	23.345	23.417	0	942	34	1.055741	0.020038128	1.055741	426.6191		8.0972595	-0.0051793	-0.00018031	0.00075972	NaN	3.9281	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8280.7	+		22785	8397	13200	13571							0.04200808697873981
RVTYEEEWRRK	11	Unmodified						0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	776.404963	1550.79537	2.1772	0.0016904	-11.918	-0.0092531	-9.7406	-0.0075627	776.3962553521825	23.392	0.072395	23.379	23.355	23.427	-0.013296	942	34	1.055741	0.020038128	1.0542215	426.6191		8.0972595	0.0051793	0.0002149	-0.00075972	NaN	3.9281	111	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8627.5	+		22786	8397	13200	13571							0.04200808697873981
RVVGAPGA	8	Unmodified	_RVVGAPGA_					0	0	0			REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.4256988882001	1	726.425699	725.418422	1.0885	0.0007907	6.0628	0.0044042	7.1513	0.0051949	726.430559455744	30.462	0.072393	30.456	30.432	30.505	-0.0057545	648	49	1.2333171	0.028837085	1.2317977	251.68745	0	5.8848724						85	4	2	NaN	NaN	NaN	0.84692	1	3614	3614		1.4396	0	1	9570.5	+		22787	12009	13201	13572	18072	18072					0.044729947286214156
RVVGAPGA	8	Unmodified						0	0	0			REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	726.425699	725.418422	1.0885	0.0007907	6.0628	0.0044042	7.1513	0.0051949	726.430559455744	30.462	0.072393	30.456	30.432	30.505	-0.0057545	648	49	1.2333171	0.028837085	1.2317977	251.68745		5.8848724	-0.003388	-0.00040779	0.00014158	NaN	1.4396	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9570.5	+		22788	12009	13201	13572							0.044729947286214156
RWAAQLGAGDR	11	Unmodified	_RWAAQLGAGDR_					0	0	0			REV__nc|ENSG00000197774|A4GXA9-2|EME2	REV__nc|ENSG00000197774|A4GXA9-2|EME2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8152529818001	2	600.815253	1199.61595	0.78025	0.00046878	6.3709	0.0038278	7.1512	0.0042965	600.8181600273473	37.915	0.072075	37.915	37.915	37.987	0	1155	25	0.92591566	0.01468581	0.92591566	375.12497	0	5.949829						42	4	2	NaN	NaN	NaN	0.76654	1	16470	16470		2.5994	0.13793	1	2410.3	+		22789	11161	13202	13573	18073	18073					0.02412969200599946
RWCRTGMFFV	10	Unmodified	_RWCRTGMFFV_					0	0	0			REV__ENST00000396359.1_1_8:82193222-82195661:+|nuORF	REV__ENST00000396359.1_1_8:82193222-82195661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.8153528297499	2	651.815353	1301.61615	2.1298	0.0013883	-1.1862	-0.00077317	0.94366	0.00061509	652.3154152913929	18.268	0.071875	18.268	18.221	18.292	0	1122	46	0.9460945	0.027504742	0.9460945	382.9585	0	11.133331						61	4	2	NaN	NaN	NaN	0.77928	1	18806	18806		0.69115	0	1	3983.3	+		22790	12012	13203	13574	18074	18074					-0.022590703954392666
RWDEAFRKF	9	Unmodified	_RWDEAFRKF_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.88412328729993	3	418.884123	1253.63054	1.525	0.0006388	-1.9495	-0.00081662	-0.42451	-0.00017782	418.8836824762241	19.252	0.12004	19.252	19.228	19.348	0	1461	43	0.7376554	0.025979817	0.7376554	448.0564	0	15.780304						104	6	2	NaN	NaN	NaN	0.041983	1	17873	17873		44.633	31.532	1	13512			22791	1278	13204	13575	18075	18075					0.013870413487211408
RWDEAFRKF	9	Unmodified						0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	418.884123	1253.63054	1.5411	0.00064556	-1.2649	-0.00052983	0.27628	0.00011573	418.88360053746715	19.611	0.14441	19.597	19.597	19.741	-0.014141	1464	31	0.73579943	0.018559039	0.73428	446.92905		11.272858	0.17228	0.00059902	-0.0016877	NaN	44.633	63	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5606.1			22792	1278	13204	13575							0.013870413487211408
RWDRGTNHLLF	11	Unmodified	_RWDRGTNHLLF_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000529186.1_1_11:44129577-44137613:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.24946517070003	3	472.249465	1413.72657	1.124	0.00053082	-0.58314	-0.00027539	0.54088	0.00025543	472.24914016399197	20.477	0.096134	20.477	20.429	20.525	0	1383	28	0.7858409	0.016656995	0.7858409	476.73608	0	10.105103						41	5	2	NaN	NaN	NaN	0.6875	1	20175	20175		3.9007	1.1117	1	4682			22793	3732	13205	13576	18076	18076					0.03625189188846889
RWDVSSFF	8	Unmodified	_RWDVSSFF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.25089160075	2	522.250892	1042.48723	1.3327	0.00069599	-2.9827	-0.0015577	-1.65	-0.00086173	522.2491079134802	29.015	0.21721	29.015	28.967	29.184	0	1299	58	0.8375814	0.035054564	0.8375814	339.9183	0	14.226318						204	10	3	NaN	NaN	NaN	0.26796	1	10310	10310		44.638	19.677	1	22455			22794	3536	13206	13577	18077	18077					-0.03231385762342143
RWDVSSFF	8	Unmodified	_RWDVSSFF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.25089160075	2	522.250892	1042.48723	1.1293	0.00058977	-1.434	-0.00074889	-0.30469	-0.00015912	522.2499762563355	29.038	0.16891	29.031	28.982	29.151	-0.0077229	1296	46	0.8394264	0.027671635	0.83790696	340.66705	0	11.230072						188	8	3	NaN	NaN	NaN	0.67765	1	10103	10103		20.449	2.6683	1	20534			22795	3536	13206	13577	18078	18078					-0.03231385762342143
RWEARSIATDL	11	Unmodified	_RWEARSIATDL_					0	0	0			REV__ENST00000468045.5_1_2:27354140-27354269:-|nuORF	REV__ENST00000468045.5_1_2:27354140-27354269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.90184254813335	3	439.901843	1316.6837	0.94227	0.00041451	7.2252	0.0031784	8.1675	0.0035929	439.90543216069955	20.477	0.096142	20.477	20.453	20.549	0	1425	31	0.7599118	0.018532872	0.7599118	461.33447	0	11.251129						57	5	2	NaN	NaN	NaN	0.77883	1	19064	19064		0.38034	0	1	5034.4	+		22796	12312	13207	13578	18079	18079					0.038023743407620714
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.3061981417001	2	617.306198	1232.59784	1.4157	0.00087389	-3.0961	-0.0019113	-1.6805	-0.0010374	617.3043699898072	24.96	0.21718	24.96	24.888	25.105	0	1143	109	0.9332562	0.06610054	0.9332562	377.9839	0	26.77182						448	10	2	NaN	NaN	NaN	0.012018	1	17338	17338		86.792	47.334	1	155770			22797	1751	13208	13579	18080	18080					-0.009151657741085728
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.87322425	3	411.873224	1232.59784	1.4029	0.00057782	-2.8354	-0.0011678	-1.4325	-0.00058999	411.8720920441337	24.96	0.19306	24.96	24.912	25.105	0	1518	52	0.7023569	0.03162068	0.7023569	426.695	0	19.210144						173	9	3	NaN	NaN	NaN	0.026469	1	17339	17339		56.466	34.44	1	17367			22798	1751	13208	13579	18081	18081					-0.009151657741085728
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.3061981417001	2	617.306198	1232.59784	1.4526	0.00089669	-1.3161	-0.00081241	0.13653	8.4279E-05	617.3048858287435	25.105	0.31359	25.093	24.996	25.31	-0.012011	1146	106	0.93142134	0.06424707	0.9299019	377.24075	0	26.021118						871	14	6	NaN	NaN	NaN	0.12104	1	16611	16611		32.778	2.7426	1	198800			22799	1751	13208	13579	18082	18082					-0.009151657741085728
RWFDKTLQF	9	Unmodified	_RWFDKTLQF_					0	0	0		nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	nc|ENSG00000095321|P43155-2|CRAT	nc|ENSG00000095321|P43155-2|CRAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.22062397189995	3	414.220624	1239.64004	1.2274	0.0005084	-0.94013	-0.00038942	0.28723	0.00011898	414.21986300849295	24.213	0.12069	24.213	24.188	24.309	0	1527	37	0.69677675	0.022321641	0.69677675	423.27838	0	13.559998						75	6	2	NaN	NaN	NaN	0.054111	1	17521	17521		40.006	21.082	1	8477.6			22800	1124	13209	13580	18083	18083					0.029808096342549106
RWFQPAIPSW	10	Unmodified	_RWFQPAIPSW_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3352899321501	2	644.33529	1286.65603	2.1583	0.0013907	-3.5377	-0.0022795	-1.3794	-0.0008888	644.333183266598	28.581	0.26545	28.581	28.508	28.774	0	1134	112	0.9387595	0.067837775	0.9387595	380.03586	0	27.462646						744	12	5	NaN	NaN	NaN	0.026555	1	18546	18546		60.982	35.181	1	157450			22801	1104	13210	13581	18084	18084					0.024165158711866752
RWFQPAIPSW	10	Unmodified	_RWFQPAIPSW_					0	0	0		ENST00000591563.5_1_17:73828844-73835996:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENST00000591563.5_1_17:73828844-73835996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3352899321501	2	644.33529	1286.65603	1.9191	0.0012366	-3.5019	-0.0022564	-1.5828	-0.0010198	644.3329912077253	28.628	0.2654	28.62	28.572	28.837	-0.0083504	1125	112	0.9442611	0.06782317	0.94274163	382.26303	0	27.456696						704	12	3	NaN	NaN	NaN	0.12158	1	17718	17718		42.995	29.532	1	144130			22802	1104	13210	13581	18085	18085					0.024165158711866752
RWFTHASPTL	10	Unmodified	_RWFTHASPTL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3170971790001	2	608.317097	1214.61964	1.3106	0.00079727	1.4831	0.00090222	2.7938	0.0016995	608.3191034705145	19.492	0.12001	19.492	19.492	19.612	0	1164	49	0.9204082	0.029374838	0.9204082	372.8413	0	11.899231						114	6	2	NaN	NaN	NaN	0.22283	1	16848	16848		28.495	5.3777	1	13541			22803	4540	13211	13582	18086	18086					0.020916389744797925
RWFTHASPTLF	11	Unmodified	_RWFTHASPTLF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.9032949136	3	454.903295	1361.68806	1.0334	0.00047009	-0.98217	-0.00044679	0.051209	2.3295E-05	454.9032993636125	23.875	0.12057	23.875	23.851	23.971	0	1461	40	0.7376554	0.02412808	0.7376554	447.6694	0	14.642853						108	6	3	NaN	NaN	NaN	0.16804	1	19701	19701		33.301	24.844	1	10399			22804	4540	13212	13583	18087	18087					0.02167883554329819
RWFVNGAGYF	10	Unmodified	_RWFVNGAGYF_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.7985402851001	2	608.79854	1215.58253	0.72876	0.00044367	-4.8017	-0.0029232	-4.0729	-0.0024796	609.2952620135585	26.697	0.21723	26.687	26.663	26.88	-0.010645	1158	73	0.92408	0.04404801	0.9225606	374.3254	0	17.842896						204	10	2	NaN	NaN	NaN	0.5917	1	16201	16201		15.463	1.4211	1	53238			22805	2597	13213	13584	18088	18088					-0.01664032571284224
RWHFHRYNYYR	11	Unmodified	_RWHFHRYNYYR_					0	0	0			REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	849.4134571802002	2	849.413457	1696.81236	1.6861	0.0014322	7.2681	0.0061736	8.9543	0.0076059	849.9218768785904	32.587	0.024128	32.587	32.563	32.587	0	909	40	1.0757661	0.023648262	1.0757661	434.3799	0	9.548889						52	2	3	NaN	NaN	NaN	0.78074	1	20837	20837		0.11306	0.11306	1	2575.6	+		22806	12252	13214	13585	18089	18089					-0.008172259056209441
RWKRKRRR	8	Unmodified	_RWKRKRRR_					0	0	0		ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1241.7926352823	1	1241.79264	1240.78536	1.4631	0.0018168	-10.516	-0.013059	-9.0531	-0.011242	1242.7823208918448	39.62	0.04805	39.625	39.577	39.625	0.0053368	618	130	1.2513325	0.077429175	1.2498131	253.38873	0	15.679016						221	3	3	NaN	NaN	NaN	0.84887	1	16807	16807		0.32989	0	1	20268			22807	6297	13215	13586	18090	18090					0.17459755064464844
RWLAPAAAPD	10	Unmodified	_RWLAPAAAPD_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.28526573435	2	534.285266	1066.55598	1.0566	0.00056453	-5.202	-0.0027793	-4.1454	-0.0022148	534.2828249807238	11.838	0.14412	11.83	11.782	11.926	-0.0081854	1200	31	0.89836043	0.018385053	0.896841	364.47717	0	7.459076						93	7	2	NaN	NaN	NaN	0.33935	1	11145	11145		26.115	1.5529	1	7795.2	+		22808	13076	13216	13587	18091	18091					0.025362785373545194
RWLAQPYYL	9	Unmodified	_RWLAQPYYL_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;ENST00000528042.1_1_11:57480099-57505208:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.3243908948501	2	605.324391	1208.63423	1.8281	0.0011066	-2.6251	-0.0015891	-0.79698	-0.00048243	605.3223040628585	25.781	0.14477	25.781	25.708	25.853	0	1140	85	0.93509084	0.051372707	0.93509084	378.8101	0	20.81134						242	7	4	NaN	NaN	NaN	0.025843	1	16703	16703		64.55	45.386	1	44552			22809	13719	13217	13588	18092	18092					0.03825711122613029
RWLAQPYYL	9	Unmodified	_RWLAQPYYL_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;TMX2-CTNND1|13|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|11|fusion;ENST00000528042.1_1_11:57480099-57505208:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.3243908948501	2	605.324391	1208.63423	1.7075	0.0010336	-3.4332	-0.0020782	-1.7257	-0.0010446	605.3229142773372	25.829	0.16896	25.817	25.745	25.914	-0.011602	1140	82	0.93509084	0.04954064	0.9335714	378.8101	0	20.069153						346	8	3	NaN	NaN	NaN	0.03623	1	16031	16031		52.758	33.595	1	58642			22810	13719	13217	13588	18093	18093					0.03825711122613029
RWLPQKNAAQF	11	Unmodified	_RWLPQKNAAQF_					0	0	0		nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF	nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.58244429319996	3	453.582444	1357.7255	1.5108	0.00068528	-1.4252	-0.00064642	0.085673	3.886E-05	453.5817255271594	17.957	0.14394	17.957	17.933	18.077	0	1518	43	0.7023569	0.026033461	0.7023569	426.25986	0	15.799683						155	7	3	NaN	NaN	NaN	0.36359	1	19645	19645		23.353	19.452	1	19846			22811	6011	13218	13589	18094	18094					0.06094974819916388
RWLPQKNAAQF	11	Unmodified	_RWLPQKNAAQF_					0	0	0		nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF	nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.8700282065	2	679.870028	1357.7255	2.0757	0.0014112	-1.1466	-0.00077951	0.92914	0.00063169	679.8691825742454	17.957	0.19184	17.957	17.909	18.101	0	1083	52	0.9699114	0.03112173	0.9699114	392.42862	0	12.591919						277	9	4	NaN	NaN	NaN	0.011673	1	19646	19646		86.792	79.808	1	43342			22812	6011	13218	13589	18095	18095					0.06094974819916388
RWLPQKNAAQF	11	Unmodified	_RWLPQKNAAQF_					0	0	0		nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF	nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.58244429319996	3	453.582444	1357.7255	1.8025	0.00081759	-1.51	-0.00068492	0.2925	0.00013267	453.9159875039975	18.194	0.23996	18.18	18.108	18.348	-0.01395	1518	37	0.7023569	0.022316813	0.70083743	426.25986	0	13.544067						192	11	3	NaN	NaN	NaN	0.62851	1	18752	18752		12.15	8.2488	1	17690			22813	6011	13218	13589	18096	18096					0.06094974819916388
RWLPQQNAAHF	11	Unmodified	_RWLPQQNAAHF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.3520026288501	2	684.352003	1366.68945	2.2457	0.0015369	-1.6627	-0.0011379	0.58303	0.000399	684.3507336887117	18.796	0.12001	18.796	18.748	18.868	0	1092	37	0.9644182	0.021978915	0.9644182	390.18024	0	8.89212						120	6	3	NaN	NaN	NaN	0.065807	1	19765	19765		45.827	34.088	1	13021			22814	4995	13219	13590	18097	18097					0.020775176430788633
RWLPQQNAAHF	11	Unmodified	_RWLPQQNAAHF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3520026288501	2	684.352003	1366.68945	1.8699	0.0012797	-1.6077	-0.0011002	0.26218	0.00017943	684.3512354726792	18.986	0.1441	18.972	18.9	19.044	-0.014059	1095	34	0.9625867	0.020148396	0.96106726	389.43927	0	8.15155						114	7	3	NaN	NaN	NaN	0.1667	1	18840	18840		33.425	19	1	8902.2			22815	4995	13219	13590	18098	18098					0.020775176430788633
RWMHSQPK	8	Unmodified	_RWMHSQPK_					0	0	0			REV__ENST00000535676.1_1_12:15103549-15103642:-|nuORF	REV__ENST00000535676.1_1_12:15103549-15103642:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5359943941	1	1069.53599	1068.52872	0.43422	0.00046441	5.4164	0.005793	5.8506	0.0062574	1069.5445559202865	33.478	0.096535	33.476	33.428	33.525	-0.0018501	81	112	1.5705823	0.06543076	1.5690628	318.59973	0	13.272919						205	5	3	NaN	NaN	NaN	0.80692	1	11212	11212		8.2903	0	1	15843	+		22816	12675	13220	13591	18099	18099					-0.002805282746521698
RWNGRILQ	8	Unmodified	_RWNGRILQ_					0	0	0		nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7988746361001	2	521.798875	1041.5832	0.81416	0.00042483	-6.7292	-0.0035113	-5.915	-0.0030864	521.7961064910198	35.072	0.26545	35.072	35.072	35.337	0	1284	100	0.8468043	0.060818434	0.8468043	343.66516	0	24.682434						404	12	2	NaN	NaN	NaN	0.57691	1	10291	10291		26.732	0.61661	1	87718			22817	6094	13221	13592	18100	18100					0.06406806868426429
RWNVQWRKRRR	11	Unmodified	_RWNVQWRKRRR_					0	0	0			REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.6538190086999	3	547.653819	1639.93963	0.85847	0.00047015	-1.0135	-0.00055502	-0.15499	-8.4878E-05	547.6540535629949	32.997	0.096565	32.997	32.949	33.045	0	1272	37	0.854179	0.022121787	0.854179	517.5017	0	13.402374						107	5	4	NaN	NaN	NaN	0.78138	1	20798	20798		0	0	1	7783.7	+		22818	12720	13222	13593	18101	18101					0.14525539759142703
RWNVQWRKRRR	11	Unmodified						0	0	0			REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	547.653819	1639.93963	0.85847	0.00047015	-1.0135	-0.00055502	-0.15499	-8.4878E-05	547.6540535629949	32.997	0.096565	32.997	32.949	33.045	0	1272	37	0.854179	0.022121787	0.854179	517.5017		13.402374	0	0	0	NaN	0	107	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7783.7	+		22819	12720	13222	13593							0.14525539759142703
RWPEAPWEQRR	11	Unmodified	_RWPEAPWEQRR_					0	0	0		ENST00000546058.1_1_12:132626298-132626882:-|nuORF	ENST00000546058.1_1_12:132626298-132626882:-|nuORF	ENST00000546058.1_1_12:132626298-132626882:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.8867409031999	2	755.886741	1509.75893	1.8635	0.0014086	-10.094	-0.0076302	-8.2308	-0.0062216	755.8801626753942	23.417	0.04825	23.417	23.393	23.441	0	1029	37	1.0028336	0.02192682	1.0028336	405.337	0	8.862671						63	3	2	NaN	NaN	NaN	0.75907	1	20616	20616		3.5794	0.0096432	1	8193.4			22820	7523	13223	13594	18102	18102					0.024439765918032208
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8141903493	2	574.81419	1147.61383	1.9278	0.0011082	-2.2143	-0.0012728	-0.28649	-0.00016468	574.812155199952	13.493	0.26417	13.493	13.349	13.613	0	1224	43	0.883646	0.025758564	0.883646	358.18433	0	10.441193						249	12	3	NaN	NaN	NaN	0.045904	1	14731	14731		48.65	32.066	1	24274			22821	6158	13224	13595	18103	18103					0.04592540462795114
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8141903493	2	574.81419	1147.61383	1.2415	0.00071365	-3.1428	-0.0018065	-1.9012	-0.0010929	574.8120683217629	14.308	0.071829	14.297	14.297	14.369	-0.011218	1224	49	0.883646	0.029441535	0.88212657	358.18433	0	11.9340515						74	4	2	NaN	NaN	NaN	0.29341	1	14237	14237		19.336	8.3713	1	8366			22822	6158	13224	13595	18104	18104					0.04592540462795114
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.934595042	3	458.934595	1373.78196	0.78253	0.00035913	-2.2644	-0.0010392	-1.4819	-0.00068007	458.93311765340513	20.766	0.096418	20.766	20.718	20.814	0	1386	40	0.78399014	0.02406013	0.78399014	475.74707	0	14.600342						136	5	4	NaN	NaN	NaN	0.66679	1	19842	19842		9.6366	5.7359	1	24251			22823	6158	13225	13596	18105	18105					0.11001602656597242
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.934595042	3	458.934595	1373.78196	0.74277	0.00034088	-2.0221	-0.00092803	-1.2794	-0.00058714	458.9335037315743	20.67	0.072233	20.67	20.597	20.67	0	1389	37	0.7821392	0.022212982	0.7821392	474.62384	0	13.479431						72	4	2	NaN	NaN	NaN	0.61966	1	19843	19843		12.73	8.1871	1	9152.1			22824	6158	13225	13596	18106	18106					0.11001602656597242
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.934595042	3	458.934595	1373.78196	0.96084	0.00044096	-2.009	-0.00092202	-1.0482	-0.00048106	459.2675314255545	22.042	0.12038	22.029	21.932	22.053	-0.013731	1386	34	0.78399014	0.020358562	0.7824707	475.74707	0	12.354126						93	6	2	NaN	NaN	NaN	0.77509	1	18910	18910		1.1021	0.29073	1	9662.6			22825	6158	13225	13596	18107	18107					0.11001602656597242
RWPRSPRT	8	Unmodified	_RWPRSPRT_					0	0	0			REV__ENSG00000204538|ENST00000259845|PSORS1C2	REV__ENSG00000204538|ENST00000259845|PSORS1C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2964991226501	2	528.296499	1054.57845	1.6619	0.00087796	3.2385	0.0017109	4.9003	0.0025888	528.2985250032408	18.002	0.216	17.988	17.868	18.084	-0.013786	1257	67	0.86339295	0.04051715	0.8618735	350.34106	0	16.440735						185	10	3	NaN	NaN	NaN	0.83211	1	10624	10624		4.9097	0.94122	1	14599	+		22826	11244	13226	13597	18108	18108					0.0533392272564015
RWREAQAP	8	Unmodified	_RWREAQAP_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45949456-45950393:+|nuORF;ENST00000530437.5_1_11:45947935-45950393:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.2674073322	2	507.267407	1012.52026	1.8379	0.00093233	1.9024	0.00096503	3.7404	0.0018974	507.2681148910201	25.129	0.1689	25.129	25.057	25.226	0	1233	88	0.87812483	0.053359926	0.87812483	356.50958	0	21.663544						270	8	3	NaN	NaN	NaN	0.84756	1	9081	9081		1.072	0	1	33639			22827	4433	13227	13598	18109	18109					0.014502410803629573
RWREAQAP	8	Unmodified						0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45949456-45950393:+|nuORF;ENST00000530437.5_1_11:45947935-45950393:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	507.267407	1012.52026	1.3827	0.00070141	3.1533	0.0015996	4.536	0.002301	507.2685497825374	25.105	0.14475	25.093	25.045	25.189	-0.012011	1233	88	0.87812483	0.053365707	0.8766054	356.50958		21.665924	-0.018195	0.00055431	-0.00075972	NaN	1.072	282	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34338			22828	4433	13227	13598							0.014502410803629573
RWRFRCYYYYR	11	Unmodified	_RWRFRCYYYYR_					0	0	0		ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	ENSG00000105609|ENST00000449561|LILRB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.4198936163002	2	866.419894	1730.82523	0.89301	0.00077372	-4.3539	-0.0037723	-3.4609	-0.0029986	866.4158671719827	31.5	0.12067	31.495	31.447	31.568	-0.0044174	849	34	1.1121149	0.019969344	1.1105955	448.98563	0	8.062042						89	6	3	NaN	NaN	NaN	0.77797	1	19816	19816		0.59723	0.48417	1	6017.3			22829	1551	13228	13599	18110	18110					-0.010945308377358742
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.58026364623333	3	419.580264	1255.71896	1.2338	0.00051768	-3.1319	-0.0013141	-1.8981	-0.0007964	419.57854725113947	24.55	0.14468	24.55	24.502	24.647	0	1365	34	0.7969414	0.02034533	0.7969414	484.0583	0	12.357666						142	7	3	NaN	NaN	NaN	0.46425	1	17910	17910		20.936	11.995	1	14678			22830	2211	13229	13600	18111	18111					0.10133081659205345
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.86675723605	2	628.866757	1255.71896	1.4227	0.00089467	-1.174	-0.00073829	0.24866	0.00015638	628.8660268033842	24.574	0.19289	24.574	24.526	24.719	0	1128	67	0.9424274	0.0403468	0.9424274	381.6205	0	16.3378						295	9	4	NaN	NaN	NaN	0.3742	1	17911	17911		29.706	15.757	1	47322			22831	2211	13229	13600	18112	18112					0.10133081659205345
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.86675723605	2	628.866757	1255.71896	1.2654	0.00079579	-1.9471	-0.0012244	-0.68162	-0.00042865	628.865598687429	24.984	0.16893	24.972	24.9	25.068	-0.012392	1131	43	0.94059354	0.025675297	0.93907416	380.87793	0	10.39679						180	8	2	NaN	NaN	NaN	0.67758	1	17143	17143		8.2775	0.73717	1	26966			22832	2211	13229	13600	18113	18113					0.10133081659205345
RWSQETHRR	9	Unmodified	_RWSQETHRR_					0	0	0			REV__ENST00000273067.4_1_2:217235112-217235328:-|nuORF	REV__ENST00000273067.4_1_2:217235112-217235328:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.2182764926333	3	419.218276	1254.633	2.0203	0.00084695	-0.65507	-0.00027462	1.3652	0.00057234	419.218121204957	16.275	0.11985	16.262	16.262	16.382	-0.012993	1434	28	0.75435036	0.016687691	0.7528309	458.19302	0	10.136139						74	6	2	NaN	NaN	NaN	0.58159	1	17126	17126		3.5794	1.0189	1	5297.5	+		22833	11591	13230	13601	18114	18114					0.01586889806412728
RWSRHWTL	8	Unmodified	_RWSRHWTL_					0	0	0		GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3043241547501	2	571.304324	1140.5941	2.0754	0.0011857	4.15	0.0023709	6.2254	0.0035566	571.3072084520838	17.813	0.095938	17.813	17.765	17.861	0	1251	34	0.8670771	0.020261824	0.8670771	351.4938	0	8.213684						86	5	3	NaN	NaN	NaN	0.83658	1	14476	14476		3.5698	0.35817	1	7788.8			22834	7809	13231	13602	18115	18115					0.029422092427012103
RWSTISENLF	10	Unmodified	_RWSTISENLF_					0	0	0		ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.8196696577	2	626.81967	1251.62479	2.0233	0.0012683	-4.1172	-0.0025807	-2.0939	-0.0013125	626.8175966784985	25.901	0.16891	25.901	25.853	26.022	0	1155	49	0.92591566	0.02936846	0.92591566	374.9477	0	11.892731						127	8	2	NaN	NaN	NaN	0.34981	1	17818	17818		25.681	2.5956	1	26048			22835	830	13232	13603	18116	18116					0.009038980464310953
RWSTISENLF	10	Unmodified	_RWSTISENLF_					0	0	0		ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	ENSG00000075188|ENST00000552283|NUP37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.8196696577	2	626.81967	1251.62479	1.8353	0.0011504	-9.55	-0.0059861	-7.7147	-0.0048357	626.8186043349139	25.949	0.096508	25.938	25.89	25.986	-0.0116	1155	97	0.92591566	0.05869901	0.9243962	374.94772	0	23.77005						205	5	4	NaN	NaN	NaN	0.21251	1	17057	17057		34.454	16.22	1	28677			22836	830	13232	13603	18117	18117					0.009038980464310953
RWTAKQKLYS	10	Unmodified	_RWTAKQKLYS_					0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5751782683334	3	427.575178	1279.70371	0.71306	0.00030489	-2.0825	-0.00089043	-1.3694	-0.00058554	427.5743488047971	20.935	0.048149	20.921	20.897	20.945	-0.014088	1407	43	0.77102906	0.025934815	0.7695096	468.22394	0	15.749451						58	3	2	NaN	NaN	NaN	0.74854	1	17605	17605		2.239	0	1	10262			22837	291	13233	13604	18118	18118					0.07504170071388216
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.4722551503	2	820.472255	1638.92996	2.2095	0.0018129	-5.1008	-0.0041851	-2.8912	-0.0023722	820.4691705450373	54.524	0.12048	54.524	54.5	54.62	0	618	82	1.2513325	0.048644304	1.2513325	505.41586	0	19.647522						412	6	7	NaN	NaN	NaN	0.78138	1	20796	20796		0	0	1	80263			22838	6362	13234	13605	18119	18119					0.13604958701102987
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.4722551503	2	820.472255	1638.92996	2.1653	0.0017766	-4.6978	-0.0038544	-2.5325	-0.0020778	820.4706295833607	54.548	0.096409	54.548	54.5	54.596	0	855	55	1.1084836	0.03269291	1.1084836	447.71887	0	13.204712						360	5	7	NaN	NaN	NaN	0.78138	1	20797	20797		0	0	1	60930			22839	6362	13234	13605	18120	18120					0.13604958701102987
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.4722551503	2	820.472255	1638.92996	-0.23108	-0.00018959	-2.9628	-0.0024309	-3.1939	-0.0026205	820.471083943185	54.522	0.09642	54.521	54.497	54.593	-0.0006218	615	61	1.2531329	0.03601551	1.2516136	506.14307	0	14.546722						328	5	5	NaN	NaN	NaN	0.78138	1	19769	19769		0	0	1	61143			22840	6362	13234	13605	18121	18121					0.13604958701102987
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.4722551503	2	820.472255	1638.92996	-0.27029	-0.00022176	-2.7626	-0.0022666	-3.0329	-0.0024884	820.4705983538546	54.546	0.09642	54.545	54.497	54.593	-0.00061798	852	52	1.1102993	0.030868292	1.1087799	448.45227	0	12.467773						304	5	7	NaN	NaN	NaN	0.78138	1	19770	19770		0	0	1	47552			22841	6362	13234	13605	18122	18122					0.13604958701102987
RWWFWDPM	8	Unmodified	_RWWFWDPM_					0	0	0			REV__SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|16|2|sense	REV__SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|16|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.27638645725	2	612.276386	1222.53822	0.82739	0.00050659	-4.8643	-0.0029783	-4.0369	-0.0024717	612.2738722440433	28.532	0.0965	28.523	28.499	28.596	-0.0083485	1149	37	0.92958635	0.022023976	0.9280669	376.53183	0	8.920868						78	5	2	NaN	NaN	NaN	0.84207	1	16343	16343		3.5732	0.0034402	1	7622	+		22842	13363	13235	13606	18123	18123					-0.06414759989138474
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.7901839367499	2	501.790184	1001.56581	2.0559	0.0010316	-2.947	-0.0014788	-0.89106	-0.00044713	501.7889675800197	22.163	0.33767	22.163	21.994	22.332	0	1305	64	0.83389086	0.03874868	0.83389086	338.60074	0	15.733887						623	15	4	NaN	NaN	NaN	0.23112	1	8666	8666		23.334	5.5355	1	180120			22843	3321	13236	13607	18124	18124					0.0650946654272957
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.7901839367499	2	501.790184	1001.56581	1.3142	0.00065944	-1.7711	-0.00088872	-0.45692	-0.00022928	501.7894301541329	22.187	0.31339	22.173	22.029	22.342	-0.013731	1305	64	0.83389086	0.03874451	0.8323714	338.6007	0	15.732178						592	14	4	NaN	NaN	NaN	0.14301	1	8493	8493		29.598	5.0363	1	185970			22844	3321	13236	13607	18125	18125					0.0650946654272957
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.80074862305	2	531.800749	1061.58694	2.1617	0.0011496	-3.6338	-0.0019324	-1.472	-0.00078284	531.7992612698903	22.525	0.14471	22.525	22.501	22.645	0	1287	76	0.8449601	0.046084464	0.8449601	342.8324	0	18.698242						375	7	4	NaN	NaN	NaN	0.032689	1	11195	11195		55.592	14.635	1	156510			22845	5649;5713	13237	13608	18126	18126					0.058614318515992636
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A	ENSG00000196659|ENST00000408939|TTC30B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.80074862305	2	531.800749	1061.58694	1.1033	0.00058672	-2.5897	-0.0013772	-1.4864	-0.00079048	531.8000364989689	22.573	0.16887	22.559	22.487	22.655	-0.01354	1290	76	0.84311575	0.04608953	0.8415963	342.08408	0	18.700256						416	8	5	NaN	NaN	NaN	0.084037	1	10939	10939		38.131	6.5698	1	164320			22846	5649;5713	13237	13608	18127	18127					0.058614318515992636
RYAEIFQDL	9	Unmodified	_RYAEIFQDL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7956632451501	2	577.795663	1153.57677	2.0946	0.0012102	-7.191	-0.0041549	-5.0965	-0.0029447	577.7921096999573	25.588	0.12063	25.588	25.564	25.684	0	1221	73	0.885486	0.044133663	0.885486	358.90814	0	17.888397						158	6	3	NaN	NaN	NaN	0.2345	1	14925	14925		23.118	6.5334	1	20665			22847	4358	13238	13609	18128	18128					0.006128241263922973
RYAEIFQDL	9	Unmodified	_RYAEIFQDL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7956632451501	2	577.795663	1153.57677	1.8868	0.0010902	-6.436	-0.0037187	-4.5492	-0.0026285	577.7920922451573	25.636	0.14473	25.624	25.552	25.696	-0.0116	1221	76	0.885486	0.045970082	0.88396657	358.90814	0	18.632751						146	7	2	NaN	NaN	NaN	0.42817	1	14434	14434		12.57	4.9821	1	19991			22848	4358	13238	13609	18129	18129					0.006128241263922973
RYAIAFPLI	9	Unmodified	_RYAIAFPLI_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.3185772354501	2	532.318577	1062.6226	1.3812	0.00073526	-1.9715	-0.0010495	-0.5903	-0.00031423	532.3176546879268	30.632	0.09655	30.632	30.584	30.68	0	1254	58	0.8652351	0.034986377	0.8652351	351.05435	0	14.195129						123	5	3	NaN	NaN	NaN	0.39244	1	11255	11255		14.042	5.7968	1	14125			22849	2369	13239	13610	18130	18130					0.0937951409928246
RYAILTKATW	10	Unmodified	_RYAILTKATW_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.85077282085	2	611.850773	1221.68699	0.86091	0.00052675	-0.86056	-0.00052653	0.00034998	2.1414E-07	611.8504504720876	20.477	0.072128	20.477	20.429	20.501	0	1161	37	0.9222442	0.022031128	0.9222442	373.5608	0	8.923859						76	4	2	NaN	NaN	NaN	0.61382	1	17027	17027		13.949	6.3612	1	7405			22850	3957	13240	13611	18131	18131					0.08501669185397986
RYAITVWYF	9	Unmodified	_RYAITVWYF_					0	0	0		ENST00000593477.1_1_19:41313377-41313766:+|nuORF;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000269858|Q96KS0-2|EGLN2;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000269858|ENST00000303961|EGLN2;ENSG00000135766|ENST00000366641|EGLN1	ENST00000593477.1_1_19:41313377-41313766:+|nuORF	ENST00000593477.1_1_19:41313377-41313766:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.8189413762	2	609.818941	1217.62333	1.3912	0.00084835	-1.7648	-0.0010762	-0.37367	-0.00022787	609.8178833363403	30.149	0.14479	30.149	30.101	30.246	0	1143	49	0.9332562	0.029358983	0.9332562	378.03537	0	11.892456						200	7	3	NaN	NaN	NaN	0.13602	1	16934	16934		30.61	21.648	1	35053			22851	2961	13241	13612	18132	18132					0.023223087483074778
RYAITVWYF	9	Unmodified	_RYAITVWYF_					0	0	0		ENST00000593477.1_1_19:41313377-41313766:+|nuORF;ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000269858|Q96KS0-2|EGLN2;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000269858|ENST00000303961|EGLN2;ENSG00000135766|ENST00000366641|EGLN1	ENST00000593477.1_1_19:41313377-41313766:+|nuORF	ENST00000593477.1_1_19:41313377-41313766:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.8189413762	2	609.818941	1217.62333	0.54107	0.00032996	-0.79622	-0.00048555	-0.25515	-0.0001556	609.8187572260819	30.197	0.12067	30.19	30.142	30.263	-0.0064106	1146	58	0.93142134	0.034861922	0.9299019	377.2921	0	14.121582						120	6	2	NaN	NaN	NaN	0.10363	1	16255	16255		35.296	14.783	1	25183			22852	2961	13241	13612	18133	18133					0.023223087483074778
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2975158298501	2	576.297516	1150.58048	2.0011	0.0011532	-2.0585	-0.0011863	-0.057424	-3.3093E-05	576.2967231686218	22.091	0.24119	22.091	22.019	22.26	0	1212	82	0.8910048	0.04962623	0.8910048	361.15613	0	20.115295						398	11	5	NaN	NaN	NaN	0.03618	1	14835	14835		52.78	20.327	1	108150			22853	1791	13242	13613	18134	18134					0.011211706285848777
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2975158298501	2	576.297516	1150.58048	1.2385	0.00071373	-0.49411	-0.00028476	0.74436	0.00042897	576.2975375783518	22.115	0.26526	22.101	22.053	22.318	-0.013731	1215	82	0.8891654	0.049631655	0.88764596	360.41055	0	20.117493						371	12	4	NaN	NaN	NaN	0.048656	1	14332	14332		47.482	9.3507	1	110540			22854	1791	13242	13613	18135	18135					0.011211706285848777
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(58)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2949731409001	2	584.294973	1166.57539	2.816	0.0016453	-2.1447	-0.0012531	0.67125	0.00039221	584.2939671065516	18.388	0.23992	18.388	18.34	18.58	0	1209	64	0.892844	0.03861904	0.892844	361.84286	0	15.651154						451	11	5	NaN	NaN	NaN	0.030696	1	15361	15361		58.2	23.761	1	158590			22855	1791	13242	13614	18136	18136		200			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(100)EQL	0	0	1		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2949731409001	2	584.294973	1166.57539	2.3161	0.0013533	-1.7898	-0.0010458	0.52638	0.00030756	584.2943042516318	18.434	0.24005	18.42	18.348	18.588	-0.01395	1209	70	0.892844	0.042292476	0.8913246	361.84286	0	17.139862						499	11	5	NaN	NaN	NaN	0.0042638	1	14831	14831		104.2	59.56	1	164940			22856	1791	13242	13614	18137	18137		200			-0.0012313323402395326
RYAMTVWYF	9	Unmodified	_RYAMTVWYF_					0	0	0		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.7971516891	2	618.797152	1235.57975	1.3762	0.00085161	-1.8178	-0.0011249	-0.44158	-0.00027325	618.7967624223954	29.208	0.31369	29.208	29.136	29.449	0	1158	109	0.92408	0.06610769	0.92408	374.2574	0	26.773987						670	14	4	NaN	NaN	NaN	0.13602	1	17416	17416		30.61	11.492	1	227970			22857	2606	13243	13615	18138	18138					-0.028616240204655696
RYAMTVWYF	9	Unmodified	_RYAMTVWYF_					0	0	0		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.7971516891	2	618.797152	1235.57975	1.0015	0.00061973	-1.9396	-0.0012002	-0.93813	-0.00058051	618.796872612978	29.256	0.28959	29.248	29.151	29.441	-0.0077229	1155	85	0.92591566	0.051433682	0.9243962	375.00082	0	20.830963						685	13	5	NaN	NaN	NaN	0.21199	1	16684	16684		24.562	7.3636	1	225410			22858	2606	13243	13615	18139	18139					-0.028616240204655696
RYAMTVWYF	9	Oxidation (M)	_RYAM(Oxidation (M))TVWYF_		RYAM(1)TVWYF		RYAM(47)TVWYF	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.79460900015	2	626.794609	1251.57467	2.2057	0.0013825	-0.9138	-0.00057277	1.2919	0.00080977	626.7939069322496	26.456	0.26549	26.456	26.384	26.65	0	1146	97	0.93142134	0.058730662	0.93142134	377.17737	0	23.782898						941	12	6	NaN	NaN	NaN	0.048656	1	17811	17811		47.482	21.681	1	353330			22859	2606	13243	13616	18140	18140		299			-0.04105927883097138
RYAMTVWYF	9	Oxidation (M)	_RYAM(Oxidation (M))TVWYF_		RYAM(1)TVWYF		RYAM(40)TVWYF	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.79460900015	2	626.794609	1251.57467	1.5371	0.00096345	-0.45909	-0.00028776	1.078	0.0006757	626.794203527832	26.504	0.45849	26.494	26.349	26.808	-0.010645	1146	97	0.93142134	0.05873698	0.9299019	377.17737	0	23.785461						1139	20	6	NaN	NaN	NaN	0.070055	1	17051	17051		40.154	17.036	1	366930			22860	2606	13243	13616	18141	18141		299			-0.04105927883097138
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.28526573435	2	558.285266	1114.55598	1.8848	0.0010523	-0.90929	-0.00050764	0.97556	0.00054464	558.2848660112151	23.007	0.096243	23.007	22.959	23.055	0	1254	52	0.8652351	0.03131038	0.8652351	350.84497	0	12.696075						132	5	2	NaN	NaN	NaN	0.10956	1	13460	13460		34.439	19.263	1	35093			22861	4689	13244	13617	18142	18142					0.003282785373585284
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.28526573435	2	558.285266	1114.55598	1.5663	0.00087444	-1.9394	-0.0010827	-0.37307	-0.00020828	558.2844411017071	23.055	0.19273	23.041	22.969	23.162	-0.013294	1254	70	0.8652351	0.04234737	0.86371565	350.84497	0	17.171478						239	9	3	NaN	NaN	NaN	0.31737	1	13076	13076		17.799	5.2111	1	40459			22862	4689	13244	13617	18143	18143					0.003282785373585284
RYAREVEM	8	Unmodified	_RYAREVEM_					0	0	0			REV__tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	REV__tr|U7T685|U7T685_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00148PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5145902499999	1	1053.51459	1052.50731	1.487	0.0015666	5.3541	0.0056406	6.8411	0.0072071	1053.5217614348744	26.697	0.072378	26.687	26.663	26.735	-0.010645	180	85	1.5121819	0.049617648	1.5106624	306.81244	0	10.067108						79	4	2	NaN	NaN	NaN	0.81756	1	10508	10508		6.8632	0.613	1	9006.1	+		22863	13625	13245	13618	18144	18144					-0.01683958094031368
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7828902209001	2	522.78289	1043.55123	1.8153	0.00094903	-1.3312	-0.00069595	0.48411	0.00025308	522.7822305889053	15.822	0.23983	15.822	15.798	16.038	0	1215	73	0.8891654	0.0441671	0.8891654	360.848	0	17.924225						418	11	4	NaN	NaN	NaN	0.012861	1	10361	10361		84.233	44.774	1	143600			22864	1928	13246	13619	18145	18145					0.031193943946163927
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7828902209001	2	522.78289	1043.55123	2.3732	0.0012406	-2.6276	-0.0013737	-0.25449	-0.00013304	522.781650561485	15.963	0.33543	15.951	15.855	16.19	-0.012611	1218	109	0.8873258	0.06630081	0.8858064	360.10144	0	26.906677						599	15	4	NaN	NaN	NaN	0.010878	1	10157	10157		90.252	32.052	1	171210			22865	1928	13246	13619	18146	18146					0.031193943946163927
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENSG00000141551|ENST00000314028|CSNK1D;nc|ENSG00000141551|P48730-2|CSNK1D;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|2|fusion;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7881725640501	2	537.788173	1073.56179	1.9197	0.0010324	-1.8329	-0.00098572	0.086818	4.669E-05	537.7869497826811	15.51	0.24019	15.51	15.462	15.702	0	1203	67	0.8965218	0.04046023	0.8965218	363.70096	0	16.41391						274	11	4	NaN	NaN	NaN	0.097143	1	11716	11716		36.235	7.5683	1	57586			22866	13662;5973	13247	13620	18147	18147					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENSG00000141551|ENST00000314028|CSNK1D;nc|ENSG00000141551|P48730-2|CSNK1D;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|2|fusion;ENSG00000213923|ENST00000396832|CSNK1E	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7881725640501	2	537.788173	1073.56179	1.6922	0.00091007	-2.1014	-0.0011301	-0.40914	-0.00022003	537.7869829406471	15.652	0.28764	15.639	15.543	15.831	-0.012611	1200	49	0.89836043	0.029419243	0.896841	364.44684	0	11.934784						277	13	2	NaN	NaN	NaN	0.10945	1	11415	11415		34.454	12.328	1	70465			22867	13662;5973	13247	13620	18148	18148					0.027953770490512397
RYASTPQKF	9	Unmodified	_RYASTPQKF_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2905480775	2	549.290548	1096.56654	0.97122	0.00053348	-0.43196	-0.00023727	0.53926	0.00029621	549.2896151968598	13.012	0.14412	13.012	12.964	13.108	0	1236	34	0.876284	0.020248711	0.876284	355.3964	0	8.212311						102	7	2	NaN	NaN	NaN	0.21451	1	12702	12702		24.4	8.9376	1	10661			22868	4360	13248	13621	18149	18149					0.022122611917893664
RYATIVLEL	9	Unmodified	_RYATIVLEL_					0	0	0		PARP1-LIN9|1|fusion;nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	PARP1-LIN9|1|fusion;nc|ENSG00000183814|Q5TKA1-3|LIN9	PARP1-LIN9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3187742007	2	539.318774	1076.623	1.4599	0.00078736	1.5615	0.00084217	3.0215	0.0016295	539.3204142053335	26.94	0.16889	26.94	26.891	27.06	0	1248	82	0.8689189	0.049701393	0.8689189	352.4903	0	20.16214						285	8	4	NaN	NaN	NaN	0.1507	1	11847	11847		28.495	10.526	1	40477			22869	8090;5329	13249	13622	18150	18150					0.08774889028450161
RYATQLQQI	9	Unmodified	_RYATQLQQI_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	ENSG00000171346|ENST00000254043|KRT15	ENSG00000171346|ENST00000254043|KRT15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8091049714001	2	560.809105	1119.60366	2.3986	0.0013452	-1.5215	-0.00085325	0.87715	0.00049191	560.80837163267	18.029	0.23987	18.029	17.981	18.221	0	1233	58	0.87812483	0.034971297	0.87812483	356.05203	0	14.179749						376	11	4	NaN	NaN	NaN	0.0052656	1	13660	13660		102.05	43.447	1	151330		+	22870	176	13250	13623	18151	18151					0.04863932737566756
RYATQLQQI	9	Unmodified	_RYATQLQQI_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	ENSG00000171346|ENST00000254043|KRT15	ENSG00000171346|ENST00000254043|KRT15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8091049714001	2	560.809105	1119.60366	2.2572	0.0012659	-0.7994	-0.00044831	1.4578	0.00081754	560.8087841018621	18.074	0.28797	18.06	17.988	18.276	-0.013786	1233	61	0.87812483	0.036813855	0.8766054	356.05203	0	14.926849						442	13	4	NaN	NaN	NaN	0.00012056	1	13264	13264		121.66	36.314	1	164860		+	22871	176	13250	13623	18152	18152					0.04863932737566756
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8163986872501	2	575.816399	1149.61824	2.2712	0.0013078	0.03464	1.9946E-05	2.3058	0.0013277	575.816719380193	27.929	0.31369	27.929	27.833	28.146	0	1212	109	0.8910048	0.06616485	0.8910048	361.1597	0	26.819244						778	14	5	NaN	NaN	NaN	0.0034808	1	14800	14800		106.56	48.322	1	558090			22872	471	13251	13624	18153	18153					0.04942004885697315
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8163986872501	2	575.816399	1149.61824	1.6079	0.00092587	0.46498	0.00026774	2.0729	0.0011936	575.8171024277733	27.977	0.28954	27.968	27.895	28.185	-0.0089798	1212	121	0.8910048	0.07353234	0.88948536	361.1597	0	29.805603						863	13	5	NaN	NaN	NaN	0.0052656	1	14293	14293		102.05	26.348	1	581120			22873	471	13251	13624	18154	18154					0.04942004885697315
RYAVVLNATW	10	Unmodified	_RYAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.82729772455	2	596.827298	1191.64004	1.6796	0.0010024	-1.0565	-0.00063057	0.62304	0.00037184	596.826849775515	24.743	0.19304	24.743	24.695	24.888	0	1182	103	0.9093879	0.062428296	0.9093879	368.45697	0	25.294098						607	9	5	NaN	NaN	NaN	0.00014814	1	16204	16204		106.42	69.122	1	542720			22874	1149	13252	13625	18155	18155					0.05188809634273639
RYAVVLNATW	10	Unmodified	_RYAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.82729772455	2	596.827298	1191.64004	1.4961	0.00089292	-0.88981	-0.00053107	0.6063	0.00036186	596.8273190391968	24.767	0.16887	24.755	24.707	24.875	-0.012392	1182	115	0.9093879	0.06977278	0.90786844	368.45697	0	28.269897						543	8	4	NaN	NaN	NaN	1.4778E-08	1	15587	15587		133.34	72.072	1	491260			22875	1149	13252	13625	18156	18156					0.05188809634273639
RYAWIKRQL	9	Unmodified	_RYAWIKRQL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.91201330393335	3	411.912013	1232.71421	1.6117	0.00066389	-3.021	-0.0012444	-1.4093	-0.0005805	412.24493951846523	16.686	0.12003	16.686	16.638	16.758	0	1395	34	0.7784366	0.020367384	0.7784366	472.9144	0	12.373566						77	6	2	NaN	NaN	NaN	0.1507	1	17355	17355		28.495	16.346	1	6655.2			22876	3308	13253	13626	18157	18157					0.10716197516467219
RYAYYLQFC	9	Unmodified	_RYAYYLQFC_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.78678396805	2	613.786784	1225.55902	0.63583	0.00039026	-9.1911	-0.0056414	-8.5553	-0.0052511	614.2824740033454	29.69	0.16888	29.683	29.61	29.779	-0.0070648	1167	34	0.91857195	0.020198464	0.9170525	372.0602	0	8.181244						101	8	2	NaN	NaN	NaN	0.56671	1	16431	16431		6.8632	0.43328	1	12749			22877	13688	13254	13627	18158	18158					-0.04474214400124765
RYCFVYLI	8	Unmodified	_RYCFVYLI_					0	0	0		ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7835129976	2	538.783513	1075.55247	1.0472	0.00056419	-9.5123	-0.005125	-8.4651	-0.0045609	538.778855709924	30.197	0.072393	30.19	30.166	30.238	-0.0064106	1260	64	0.8615505	0.038698435	0.8600311	349.50565	0	15.6987915						74	4	2	NaN	NaN	NaN	0.80071	1	11484	11484		9.1232	0	1	7605			22878	7123	13255	13628	18159	18159					0.01771892439160183
RYCFVYLI	8	Unmodified						0	0	0		ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.783513	1075.55247	2.0543	0.0011068	-11.333	-0.006106	-9.2786	-0.0049992	538.7779669112051	30.222	0.048271	30.222	30.173	30.222	0	1263	31	0.85970795	0.018426836	0.85970795	348.75818		7.4752197	0.01576	-0.00099679	-0.00016157	NaN	9.1232	27	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2856.6			22879	7123	13255	13628							0.01771892439160183
RYCVQLSQI	9	Unmodified	_RYCVQLSQI_					0	0	0		CON__P02535-1;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;TPT1-KRT17|1|fusion	CON__P02535-1;ENSG00000128422|ENST00000311208|KRT17;TPT1-KRT17|1|fusion	ENSG00000128422|ENST00000311208|KRT17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2922334867001	2	555.292233	1108.56991	1.7107	0.00094993	0.036415	2.0221E-05	1.7471	0.00097016	555.7940631403645	21.826	0.43335	21.812	21.571	22.004	-0.013895	1230	73	0.8799654	0.044181406	0.878446	356.8415	0	17.91632						756	19	3	NaN	NaN	NaN	0.084037	1	12854	12854		38.131	12.33	1	234080		+	22880	188;206;13722	13256	13629	18160	18160					0.019971879741660814
RYDEDEEQRP	10	Unmodified	_RYDEDEEQRP_					0	0	0			REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.1969837988666	3	446.196984	1335.56912	1.4024	0.00062573	5.2763	0.0023543	6.6787	0.00298	446.5338648945004	28.243	0.24127	28.243	28.17	28.412	0	1470	88	0.7320868	0.05379498	0.7320868	444.37708	0	32.653595						496	11	6	NaN	NaN	NaN	0.70677	1	19337	19337		8.9416	2.134	1	69337	+		22881	11353	13257	13630	18161	18161					-0.08523979931874237
RYDEIRRHW	9	Unmodified	_RYDEIRRHW_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.2302935444	3	444.230294	1329.66905	1.5827	0.00070307	-1.7865	-0.00079361	-0.2038	-9.0533E-05	444.56419899986895	13.901	0.14408	13.901	13.829	13.973	0	1452	40	0.74322224	0.024120152	0.74322224	451.15677	0	14.641632						124	7	2	NaN	NaN	NaN	0.25151	1	19246	19246		22.026	14.222	1	16551			22882	3625	13258	13631	18162	18162					0.017403469832743212
RYDEIRRHW	9	Unmodified	_RYDEIRRHW_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.2302935444	3	444.230294	1329.66905	1.2419	0.00055167	-0.15451	-6.864E-05	1.0873	0.00048303	444.2296071342641	15.052	0.072219	15.04	14.968	15.04	-0.011738	1452	40	0.74322224	0.024120152	0.7417028	451.15677	0	14.641663						63	4	2	NaN	NaN	NaN	0.29341	1	18390	18390		19.336	14.436	1	5422.1			22883	3625	13258	13631	18163	18163					0.017403469832743212
RYDEMVESM	9	Unmodified	_RYDEMVESM_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF	ENSG00000108953|ENST00000264335|YWHAE	ENSG00000108953|ENST00000264335|YWHAE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2415489744	2	580.241549	1158.46855	1.5826	0.00091826	-1.2378	-0.00071823	0.34475	0.00020004	580.2413446467596	19.563	0.14447	19.549	19.5	19.645	-0.014141	1236	49	0.876284	0.02945429	0.8747646	355.16064	0	11.937897						151	7	3	NaN	NaN	NaN	0.46713	1	14580	14580		10.965	6.655	1	13391			22884	1704	13259	13632	18164	18164					-0.10435051510739868
RYDEMVESM	9	2 Oxidation (M)	_RYDEM(Oxidation (M))VESM(Oxidation (M))_		RYDEM(1)VESM(1)		RYDEM(56)VESM(56)	0	0	2		ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF	ENSG00000108953|ENST00000264335|YWHAE	ENSG00000108953|ENST00000264335|YWHAE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2364635965	2	596.236464	1190.45837	1.1359	0.00067725	-0.19801	-0.00011806	0.93787	0.00055919	596.2366047170956	13.301	0.11986	13.291	13.243	13.363	-0.010098	1260	34	0.8615505	0.02026838	0.8600311	349.07867	0	8.21225						82	6	2	NaN	NaN	NaN	0.032689	1	15541	15541		55.592	36.428	1	5920.9			22885	1704	13259	13633	18165	18165		191;192			-0.1292365923595753
RYDGQIAVF	9	Unmodified	_RYDGQIAVF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7772735267499	2	534.777274	1067.53999	0.93891	0.00050211	0.22735	0.00012158	1.1663	0.00062369	534.7765425650945	22.573	0.096483	22.559	22.511	22.607	-0.01354	1272	46	0.854179	0.027647734	0.8526596	346.5481	0	11.216949						120	5	4	NaN	NaN	NaN	0.49999	1	11175	11175		9.6116	0.64966	1	19498			22886	5255	13260	13634	18166	18166					0.008925723004495012
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662001	2	570.806031	1139.59751	0.86806	0.0004955	-2.0197	-0.0011528	-1.1516	-0.00065734	570.8050362160277	27.108	0.26546	27.098	27.049	27.315	-0.010126	1227	76	0.88180584	0.04600489	0.8802864	357.46826	0	18.649567						215	12	3	NaN	NaN	NaN	0.12866	1	13968	13968		31.675	11.12	1	34182			22887	647	13261	13635	18167	18167					0.0332941450603812
RYDNVTILF	9	Unmodified						0	0	0		nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	nc|ENSG00000061918|Q02153-3|GUCY1B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.806031	1139.59751	1.4675	0.00083766	-1.6641	-0.0009499	-0.19664	-0.00011224	570.8056653685564	27.084	0.1931	27.084	27.012	27.205	0	1227	67	0.88180584	0.040495276	0.88180584	357.46826		16.416016	-0.0066244	0.00027317	0.00075972	NaN	31.675	221	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33976			22888	647	13261	13635							0.0332941450603812
RYDPHLNRW	9	Unmodified	_RYDPHLNRW_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.54762260269996	3	419.547623	1255.62104	1.507	0.00063224	2.1496	0.00090188	3.6566	0.0015341	419.5489335408002	15.366	0.12014	15.366	15.318	15.438	0	1419	58	0.76361835	0.035222054	0.76361835	463.81842	0	21.393707						120	6	2	NaN	NaN	NaN	0.14227	1	17905	17905		29.706	20.121	1	12374			22889	4548	13262	13636	18168	18168					0.0034527306320342177
RYDVFCSFLH	10	Unmodified	_RYDVFCSFLH_					0	0	0			REV__ATG2A|p.S1120F|1|0.1|ENSG00000110046|chr11:64905754-64905754|G/A|missense_variant	REV__ATG2A|p.S1120F|1|0.1|ENSG00000110046|chr11:64905754-64905754|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.53773572119997	3	429.537736	1285.59138	1.4706	0.0006317	0.50109	0.00021524	1.9717	0.00084693	429.5375398654732	20.622	0.096447	20.608	20.584	20.68	-0.014088	1470	31	0.7320868	0.018567085	0.73056734	444.5537	0	11.274689						53	5	2	NaN	NaN	NaN	0.77967	1	17698	17698		0.18432	0.066403	1	3531.3	+		22890	8149	13263	13637	18169	18169					-0.039994269971430185
RYEAAFPFL	9	Unmodified	_RYEAAFPFL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2900167612501	2	557.290017	1112.56548	1.3627	0.00075943	-1.0099	-0.00056283	0.35278	0.0001966	557.2893086703805	29.039	0.14485	29.039	28.918	29.063	0	1230	79	0.8799654	0.047852874	0.8799654	356.82578	0	19.404327						196	7	3	NaN	NaN	NaN	0.059222	1	13381	13381		42.995	15.134	1	56229			22891	5961	13264	13638	18170	18170					0.013700468228989848
RYEAAFPFL	9	Unmodified	_RYEAAFPFL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2900167612501	2	557.290017	1112.56548	1.2521	0.00069777	2.3564	0.0013132	3.6084	0.0020109	557.2917206452372	29.062	0.26548	29.055	28.982	29.248	-0.0077209	1224	97	0.883646	0.05885768	0.88212657	358.31824	0	23.86676						382	12	2	NaN	NaN	NaN	0.10363	1	13002	13002		35.296	16.012	1	96510			22892	5961	13264	13638	18171	18171					0.013700468228989848
RYEFGQALF	9	Unmodified	_RYEFGQALF_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.78509855885	2	565.785099	1129.55564	2.5737	0.0014562	-0.7641	-0.00043232	1.8096	0.0010239	566.2866538196749	25.732	0.21717	25.732	25.636	25.853	0	1221	85	0.885486	0.05151713	0.885486	358.99826	0	20.886322						296	10	2	NaN	NaN	NaN	0.041983	1	14064	14064		50.315	25.753	1	182950			22893	4221	13265	13639	18172	18172					-0.003951411825028117
RYEFGQALF	9	Unmodified	_RYEFGQALF_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.78509855885	2	565.785099	1129.55564	2.2385	0.0012665	-0.032606	-1.8448E-05	2.2059	0.0012481	566.2868265347875	25.756	0.24133	25.745	25.648	25.89	-0.0116	1218	94	0.8873258	0.057039917	0.8858064	359.74417	0	23.125427						419	11	3	NaN	NaN	NaN	0.041983	1	13619	13619		50.315	18.64	1	188660			22894	4221	13265	13639	18173	18173					-0.003951411825028117
RYEGDFQW	8	Unmodified	_RYEGDFQW_					0	0	0			REV__ENST00000468803.1_1_1:161197691-161198181:+|nuORF	REV__ENST00000468803.1_1_1:161197691-161198181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	367.4980459618	3	367.498046	1099.47231	2.5222	0.00092689	1.3529	0.00049719	3.8751	0.0014241	367.4985622816063	14.788	0.072062	14.776	14.776	14.848	-0.011738	1515	25	0.7042165	0.014876246	0.70269704	428.39697	0	9.049683						38	4	2	NaN	NaN	NaN	0.84756	1	12481	12481		0.59723	0.38349	1	2149.3	+		22895	10174	13266	13640	18174	18174					-0.07344877630339397
RYEGILYTI	9	Unmodified	_RYEGILYTI_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;LSM14A|p.D364*|1|0.16|ENSG00000257103|chr19:34219829-34219830|-/T|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3084064796501	2	564.308406	1126.60226	1.9422	0.001096	-3.7056	-0.0020911	-1.7634	-0.00099513	564.3068258787134	25.588	0.14475	25.576	25.528	25.672	-0.0116	1212	79	0.8910048	0.04782182	0.88948536	361.24716	0	19.388794						327	7	4	NaN	NaN	NaN	0.070055	1	13526	13526		40.154	2.8514	1	63804			22896	3691	13267	13641	18175	18175					0.04402298648801661
RYEGILYTI	9	Unmodified						0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;LSM14A|p.D364*|1|0.16|ENSG00000257103|chr19:34219829-34219830|-/T|frameshift_variant;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.308406	1126.60226	2.3609	0.0013323	-3.4682	-0.0019571	-1.1073	-0.00062488	564.3066429371793	25.564	0.21711	25.564	25.419	25.636	0	1212	64	0.8910048	0.03861493	0.8910048	361.24716		15.655945	-0.0061442	0.00015518	0.00075972	NaN	40.154	239	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66479			22897	3691	13267	13641							0.04402298648801661
RYEGYSYEL	9	Unmodified	_RYEGYSYEL_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.2694782844001	2	590.269478	1178.5244	1.2157	0.00071761	-9.9587	-0.0058783	-8.743	-0.0051607	590.2638488048017	19.9	0.16849	19.885	19.789	19.958	-0.014141	1164	91	0.9204082	0.055137336	0.91888875	372.96964	0	22.342865						320	8	4	NaN	NaN	NaN	0.48181	1	15195	15195		10.36	1.4411	1	32846	+		22898	8431	13268	13642	18176	18176					-0.05771759007234323
RYEGYSYEL	9	Unmodified						0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.269478	1178.5244	1.8464	0.0010899	-11.147	-0.0065798	-9.3006	-0.0054899	590.2625735594127	19.852	0.16831	19.852	19.828	19.997	0	1164	97	0.9204082	0.058806837	0.9204082	372.96964		23.829803	-0.016589	-0.00060396	0.00075972	NaN	10.36	324	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44576	+		22899	8431	13268	13642							-0.05771759007234323
RYEGYSYEL	9	Unmodified						0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.269478	1178.5244	1.2157	0.00071761	-9.9587	-0.0058783	-8.743	-0.0051607	590.2638488048017	19.9	0.16849	19.885	19.789	19.958	-0.014141	1164	91	0.9204082	0.055137336	0.91888875	372.96964		22.342865	0.016589	0.00079893	-0.00075972	NaN	10.36	320	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32846	+		22900	8431	13268	13642							-0.05771759007234323
RYENGYVHPV	10	Unmodified	_RYENGYVHPV_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.87188333486665	3	411.871883	1232.59382	1.7879	0.00073638	7.8394	0.0032288	9.6273	0.0039652	411.8748630935034	16.443	0.095943	16.43	16.382	16.478	-0.012995	1449	37	0.74507743	0.022263587	0.743558	452.6485	0	13.525543						70	5	2	NaN	NaN	NaN	0.67523	1	16613	16613		5.0169	0	1	8813.6			22901	5129	13269	13643	18177	18177					-0.013172552678270222
RYFDALLKL	9	Unmodified	_RYFDALLKL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.8345914404	2	569.834591	1137.65463	1.9128	0.00109	0.69105	0.00039379	2.6039	0.0014838	569.8351122653045	26.456	0.12066	26.456	26.432	26.553	0	1164	43	0.9204082	0.025705755	0.9204082	373.12457	0	10.420868						135	6	3	NaN	NaN	NaN	0.045904	1	14381	14381		48.65	19.052	1	16435			22902	5332	13270	13644	18178	18178					0.09130881782402867
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.8274946898001	2	627.827495	1253.64044	1.6041	0.0010071	-1.4445	-0.00090688	0.1596	0.0001002	627.8269284303276	20.165	0.16819	20.165	20.069	20.237	0	1137	43	0.9369253	0.025678039	0.9369253	379.39935	0	10.398071						189	8	4	NaN	NaN	NaN	0.22593	1	17878	17878		39.34	17.49	1	23945			22903	4460	13271	13645	18179	18179					0.02376184563490824
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8274946898001	2	627.827495	1253.64044	1.239	0.00077785	-3.4195	-0.0021469	-2.1806	-0.001369	628.3270823192908	20.261	0.21662	20.246	20.126	20.343	-0.014141	1137	52	0.9369253	0.031185508	0.93540585	379.39938	0	12.628296						226	10	4	NaN	NaN	NaN	0.42508	1	17106	17106		26.96	5.1098	1	22805			22904	4460	13271	13645	18180	18180					0.02376184563490824
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.53661211506665	3	405.536612	1213.58801	1.9807	0.00080326	-2.0093	-0.00081484	-0.028553	-1.1579E-05	405.5358103179854	18.412	0.28793	18.412	18.34	18.628	0	1434	55	0.75435036	0.03337723	0.75435036	458.36142	0	20.280853						318	13	4	NaN	NaN	NaN	0.080496	1	16817	16817		34.766	17.908	1	51191			22905	4557	13272	13646	18181	18181					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8012799393	2	607.80128	1213.58801	2.31	0.001404	-1.2112	-0.00073614	1.0988	0.00066785	607.8005623613878	18.412	0.28793	18.412	18.34	18.628	0	1203	76	0.8965218	0.045950234	0.8965218	363.16882	0	18.61383						638	13	5	NaN	NaN	NaN	2.0513E-19	1	16818	16818		163.53	118.9	1	350300			22906	4557	13272	13646	18182	18182					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.8012799393	2	607.80128	1213.58801	1.9511	0.0011859	-0.91383	-0.00055542	1.0373	0.00063044	607.800801388738	18.53	0.40798	18.516	18.396	18.804	-0.01395	1206	61	0.894683	0.036770105	0.89316356	362.42395	0	14.895081						574	18	3	NaN	NaN	NaN	4.8409E-06	1	16150	16150		123.53	81.212	1	361230			22907	4557	13272	13646	18183	18183					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.53661211506665	3	405.536612	1213.58801	1.7544	0.00071147	-0.31163	-0.00012638	1.4428	0.00058509	405.53668137094695	18.53	0.21597	18.516	18.444	18.66	-0.01395	1431	73	0.75620437	0.044517517	0.7546849	459.48795	0	27.049927						302	10	4	NaN	NaN	NaN	0.00031519	1	16151	16151		72.358	57.908	1	42515			22908	4557	13272	13646	18184	18184					-0.010243537794849544
RYFDRAALF	9	Unmodified	_RYFDRAALF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.8063653172	2	579.806365	1157.59818	1.8067	0.0010475	-3.7965	-0.0022012	-1.9898	-0.0011537	579.8035183563085	21.657	0.072325	21.657	21.633	21.705	0	1188	34	0.90571284	0.020213723	0.90571284	367.09146	0	8.192749						92	4	3	NaN	NaN	NaN	0.51625	1	15070	15070		9.6116	3.3614	1	10211			22909	2245	13273	13647	18185	18185					0.025682539457193343
RYFDRAALF	9	Unmodified						0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	579.806365	1157.59818	1.2822	0.00074345	3.0966	0.0017954	4.3788	0.0025389	579.8080759403975	22.042	0.1445	22.029	21.884	22.029	-0.013731	1164	73	0.9204082	0.04408127	0.91888875	373.04758		17.866455	0.1857	0.0022706	0.006588	NaN	9.6116	225	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32225			22910	2245	13273	13647							0.025682539457193343
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3145544900501	2	634.314554	1266.61456	2.0863	0.0013234	-2.7718	-0.0017582	-0.68544	-0.00043479	634.3138440807676	22.814	0.24116	22.814	22.742	22.983	0	1128	64	0.9424274	0.0385108	0.9424274	381.5848	0	15.592865						400	11	5	NaN	NaN	NaN	0.0027333	1	18149	18149		83.529	65.295	1	74461			22911	591	13274	13648	18186	18186					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.21212848223337	3	423.212128	1266.61456	1.7054	0.00072176	-2.0394	-0.0008631	-0.33397	-0.00014134	423.2111842531096	22.814	0.072338	22.814	22.79	22.863	0	1422	37	0.7617651	0.022239447	0.7617651	462.6492	0	13.506866						72	4	3	NaN	NaN	NaN	0.23201	1	18150	18150		22.269	13.349	1	8069			22912	591	13274	13648	18187	18187					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.21212848223337	3	423.212128	1266.61456	1.3833	0.00058542	-2.985	-0.0012633	-1.6017	-0.00067787	423.2110616036649	22.982	0.12051	22.969	22.921	23.041	-0.01354	1428	37	0.7580582	0.022246659	0.75653875	460.3978	0	13.511261						97	6	2	NaN	NaN	NaN	0.19179	1	17343	17343		24.493	19.593	1	8074.1			22913	591	13274	13648	18188	18188					-0.00808664888131716
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.30365545275	2	583.303655	1164.59276	1.7566	0.0010246	-3.5819	-0.0020893	-1.8253	-0.0010647	583.3018108771512	21.079	0.096357	21.079	21.055	21.151	0	1227	52	0.88180584	0.031290054	0.88180584	357.37653	0	12.681183						150	5	3	NaN	NaN	NaN	0.084037	1	15300	15300		38.131	4.7055	1	50661			22914	5616	13275	13649	18189	18189					0.017045303632812647
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.30365545275	2	583.303655	1164.59276	1.3236	0.00077208	-2.6477	-0.0015444	-1.3241	-0.00077234	583.803649260536	21.103	0.12037	21.089	21.065	21.186	-0.014004	1230	106	0.8799654	0.064358115	0.878446	356.63065	0	26.082947						282	6	3	NaN	NaN	NaN	0.070055	1	14771	14771		40.154	6.7285	1	61246			22915	5616	13275	13649	18190	18190					0.017045303632812647
RYFHWKMNL	9	Unmodified	_RYFHWKMNL_					0	0	0		nc|ENSG00000188092|B7ZAQ6-4|GPR89A;ENST00000532574.5_1_1:145811866-145826998:-|nuORF;ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	nc|ENSG00000188092|B7ZAQ6-4|GPR89A	nc|ENSG00000188092|B7ZAQ6-4|GPR89A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2219704787001	3	432.22197	1293.64408	1.7373	0.00075089	-0.7312	-0.00031604	1.0061	0.00043485	432.22181472367816	23.971	0.096474	23.958	23.958	24.054	-0.01305	1395	25	0.7784366	0.014811873	0.77691716	472.66803	0	8.993774						47	5	2	NaN	NaN	NaN	0.66529	1	17821	17821		1.04	0.40831	1	3950.7			22916	2135	13276	13650	18191	18191					0.009005758563489508
RYFHWKMNL	9	Unmodified	_RYFHWKMNL_					0	0	0		nc|ENSG00000188092|B7ZAQ6-4|GPR89A;ENST00000532574.5_1_1:145811866-145826998:-|nuORF;ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	nc|ENSG00000188092|B7ZAQ6-4|GPR89A	nc|ENSG00000188092|B7ZAQ6-4|GPR89A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2219704787001	3	432.22197	1293.64408	1.7279	0.00074682	0.40942	0.00017696	2.1373	0.00092378	432.556614822228	23.537	0.096487	23.524	23.476	23.572	-0.01305	1395	40	0.7784366	0.024065375	0.77691716	472.668	0	14.612518						80	5	2	NaN	NaN	NaN	0.23112	1	17822	17822		25.801	23.012	1	6929.3			22917	2135	13276	13650	18192	18192					0.009005758563489508
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.8162017220001	2	556.816202	1111.61785	1.2091	0.00067325	-1.1174	-0.00062217	0.091738	5.1081E-05	556.8154475300004	20.501	0.12028	20.501	20.477	20.597	0	1188	94	0.90571284	0.0570091	0.90571284	367.27017	0	23.117432						276	6	3	NaN	NaN	NaN	0.023828	1	13353	13353		67.154	44.037	1	44926			22918	2970	13277	13651	18193	18193					0.06650629956516241
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.8162017220001	2	556.816202	1111.61785	1.0559	0.00058792	-1.5189	-0.00084577	-0.46308	-0.00025785	556.815301106222	20.694	0.265	20.68	20.584	20.849	-0.014088	1185	82	0.90755045	0.04964775	0.906031	368.01535	0	20.132324						360	12	3	NaN	NaN	NaN	0.16171	1	12975	12975		27.789	12.613	1	36708			22919	2970	13277	13651	18194	18194					0.06650629956516241
RYFILPYVI	9	Unmodified	_RYFILPYVI_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3473346749001	2	592.347335	1182.68012	1.2585	0.00074547	-2.3609	-0.0013985	-1.1024	-0.00065303	592.3460583331066	32.201	0.19303	32.201	32.128	32.321	0	1158	85	0.92408	0.05142814	0.92408	374.4423	0	20.83899						468	9	4	NaN	NaN	NaN	0.024221	1	15940	15940		78.398	44.7	1	124050			22920	3199	13278	13652	18195	18195					0.0960835630485235
RYFILPYVI	9	Unmodified	_RYFILPYVI_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.3473346749001	2	592.347335	1182.68012	0.695	0.00041168	-2.3919	-0.0014168	-1.6969	-0.0010051	592.345801589356	32.32	0.3137	32.316	32.172	32.485	-0.0037613	1149	85	0.92958635	0.05141151	0.9280669	376.67346	0	20.832214						599	14	4	NaN	NaN	NaN	0.059222	1	15331	15331		41.785	23.815	1	127250			22921	3199	13278	13652	18196	18196					0.0960835630485235
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.88171973966666	3	374.88172	1121.62333	1.3953	0.00052308	-2.7132	-0.0010171	-1.3179	-0.00049404	374.88037928896597	20.357	0.14424	20.357	20.285	20.429	0	1548	46	0.6837494	0.027924895	0.6837494	415.8447	0	16.983398						156	7	3	NaN	NaN	NaN	0.042816	1	13761	13761		37.231	16.295	1	16539			22922	769	13279	13653	18197	18197					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.88171973966666	3	374.88172	1121.62333	1.3902	0.00052115	-1.6754	-0.00062808	-0.28522	-0.00010692	374.8812275299436	20.357	0.096176	20.357	20.309	20.405	0	1485	49	0.72280174	0.029720247	0.72280174	439.59567	0	18.075348						135	5	3	NaN	NaN	NaN	0.16171	1	13762	13762		24.4	12.839	1	12207			22923	769	13279	13653	18198	18198					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8189413762001	2	561.818941	1121.62333	1.9443	0.0010923	-1.701	-0.00095566	0.24328	0.00013668	561.818191671731	20.357	0.26443	20.357	20.261	20.525	0	1167	94	0.91857195	0.056959867	0.91857195	372.4439	0	23.09491						627	12	5	NaN	NaN	NaN	0.026443	1	13763	13763		63.765	31.312	1	250500			22924	769	13279	13653	18199	18199					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8189413762001	2	561.818941	1121.62333	1.5049	0.00084547	-1.5763	-0.00088558	-0.071394	-4.0111E-05	561.8179613848536	20.694	0.57792	20.68	20.415	20.993	-0.014088	1167	82	0.91857195	0.049604833	0.9170525	372.4439	0	20.112762						717	25	2	NaN	NaN	NaN	0.097143	1	13352	13352		36.235	3.7821	1	263620			22925	769	13279	13653	18200	18200					0.06738308748322197
RYFLIGDLK	9	Unmodified	_RYFLIGDLK_					0	0	0		ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.5536030944	3	375.553603	1123.63898	1.5015	0.00056389	-4.1899	-0.0015735	-2.6884	-0.0010096	375.5520433653913	20.622	0.12053	20.608	20.559	20.68	-0.014088	1539	43	0.68933374	0.02605325	0.6878143	419.2319	0	15.844818						84	6	2	NaN	NaN	NaN	0.29681	1	13411	13411		12.57	2.9581	1	7155.2			22926	6799	13280	13654	18201	18201					0.08210595265359188
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.31349185755	2	602.313492	1202.61243	1.4768	0.00088951	-2.5581	-0.0015408	-1.0813	-0.00065128	602.3118114795574	28.798	0.1931	28.798	28.774	28.967	0	1161	73	0.9222442	0.044062257	0.9222442	373.62698	0	17.85086						282	9	2	NaN	NaN	NaN	0.040769	1	16554	16554		58.235	35.118	1	136670			22927	469	13281	13655	18202	18202					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.31349185755	2	602.313492	1202.61243	2.3168	0.0013954	0.094758	5.7074E-05	2.4115	0.0014525	602.3133952999545	28.46	0.57917	28.46	28.17	28.75	0	1161	148	0.9222442	0.08996546	0.9222442	373.62695	0	36.44751						2684	25	5	NaN	NaN	NaN	0.0014219	1	16556	16556		143.88	88.292	1	3514500			22928	469	13281	13655	18203	18203					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31349185755	2	602.313492	1202.61243	0.82137	0.00049472	-2.5676	-0.0015465	-1.7463	-0.0010518	602.8134822466066	30.245	0.048258	30.238	30.19	30.238	-0.0064106	1146	58	0.93142134	0.034880698	0.9299019	377.3449	0	14.131165						73	3	2	NaN	NaN	NaN	0.58961	1	15902	15902		9.746	4.5571	1	7659.2			22929	469	13281	13655	18204	18204					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31349185755	2	602.313492	1202.61243	0.67989	0.00040951	-2.0944	-0.0012615	-1.4145	-0.00085198	602.3124450815966	30.317	0.096483	30.311	30.287	30.383	-0.0064087	1158	61	0.92408	0.036714554	0.9225606	374.37073	0	14.874115						101	5	2	NaN	NaN	NaN	0.34922	1	15903	15903		17.799	4.6978	1	11664			22930	469	13281	13655	18205	18205					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31349185755	2	602.313492	1202.61243	1.1407	0.00068706	-2.0847	-0.0012557	-0.94405	-0.00056861	602.312134395297	28.749	0.19307	28.74	28.74	28.933	-0.0083504	1158	82	0.92408	0.04956734	0.9225606	374.37073	0	20.081116						371	9	2	NaN	NaN	NaN	0.040769	1	15904	15904		58.235	30.447	1	246620			22931	469	13281	13655	18206	18206					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31349185755	2	602.313492	1202.61243	1.963	0.0011823	0.16899	0.00010179	2.132	0.0012841	602.3135937049796	28.507	0.50678	28.499	28.185	28.692	-0.0083485	1158	160	0.92408	0.09733057	0.9225606	374.3707	0	39.431335						2262	22	6	NaN	NaN	NaN	0.028569	1	15908	15908		80.639	48.963	1	3019700			22932	469	13281	13655	18207	18207					0.01922906374034028
RYFLPPYTF	9	Unmodified	_RYFLPPYTF_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31349185755	2	602.313492	1202.61243	0.9125	0.00054961	1.7754	0.0010693	2.6879	0.0016189	602.3156987456547	30.148	0.048267	30.142	30.118	30.166	-0.0064106	1137	58	0.9369253	0.034854412	0.93540585	379.57468	0	14.120483						70	3	2	NaN	NaN	NaN	0.17328	1	15909	15909		37.302	20.718	1	6383.4			22933	469	13281	13655	18208	18208					0.01922906374034028
RYFLPPYTF	9	Unmodified						0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.313492	1202.61243	1.6135	0.00097182	-3.0567	-0.0018411	-1.4433	-0.00086929	602.3119151071764	29.763	0.31371	29.763	29.739	30.053	0	1164	85	0.9204082	0.051400423	0.9204082	372.88315		20.82373	-0.1894	-0.00099825	-0.0074988	NaN	37.302	443	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91804			22934	469	13281	13655							0.01922906374034028
RYFLPPYTF	9	Unmodified						0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.313492	1202.61243	0.74439	0.00044836	-2.9704	-0.0017891	-2.226	-0.0013407	602.8133540109924	28.99	0.072371	28.982	28.982	29.055	-0.0077229	1164	73	0.9204082	0.044062257	0.91888875	372.88315		17.85086	0.092303	-0.00043659	-0.0016777	NaN	58.235	167	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35931			22935	469	13281	13655							0.01922906374034028
RYFLWHTYR	9	Unmodified	_RYFLWHTYR_					0	0	0		ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF	ENSG00000115155|ENST00000272371|OTOF	ENSG00000115155|ENST00000272371|OTOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.8998848018333	3	447.899885	1340.67783	1.1122	0.00049815	2.8852	0.0012923	3.9974	0.0017904	447.8998116663124	20.261	0.072077	20.261	20.237	20.309	0	1485	28	0.72280174	0.016716719	0.72280174	438.72394	0	10.1466675						43	4	2	NaN	NaN	NaN	0.49672	1	19422	19422		5.9198	3.2156	1	4011.7			22936	1993	13282	13656	18209	18209					0.02111320619746948
RYFNPKDYSW	10	Unmodified	_RYFNPKDYSW_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3251191763501	2	688.325119	1374.63569	1.6128	0.0011101	-2.0277	-0.0013957	-0.41489	-0.00028558	688.3236706143069	20.742	0.19284	20.742	20.694	20.887	0	1059	46	0.98455137	0.027442575	0.98455137	398.30258	0	11.101929						228	9	4	NaN	NaN	NaN	0.00016917	1	19848	19848		104.89	73.692	1	23436			22937	2327	13283	13657	18210	18210					-0.0366469957928075
RYFNPKDYSW	10	Unmodified	_RYFNPKDYSW_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3251191763501	2	688.325119	1374.63569	0.96163	0.00066191	-1.0182	-0.00070086	-0.056574	-3.8941E-05	688.324090227682	20.911	0.19254	20.897	20.801	20.993	-0.014086	1062	40	0.9827221	0.023781002	0.98120266	397.56253	0	9.620636						217	9	3	NaN	NaN	NaN	0.12314	1	18914	18914		42.779	19.661	1	22684			22938	2327	13283	13657	18211	18211					-0.0366469957928075
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.28767103755	2	584.287671	1166.56079	1.6107	0.00094113	-3.0476	-0.0017807	-1.4368	-0.00083953	584.2861480470007	24.043	0.14476	24.031	24.006	24.151	-0.012749	1212	73	0.8910048	0.0441432	0.88948536	361.09753	0	17.889923						309	7	4	NaN	NaN	NaN	0.12328	1	14825	14825		32.453	4.6639	1	69010	+		22939	10507	13284	13658	18212	18212					-0.015828821105287716
RYFPDLDEL	9	Unmodified						0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.287671	1166.56079	1.6107	0.00094113	-3.0476	-0.0017807	-1.4368	-0.00083953	584.2861480470007	24.043	0.14476	24.031	24.006	24.151	-0.012749	1212	73	0.8910048	0.0441432	0.88948536	361.09753		17.889923	0.0055715	0.00077402	-0.00075972	NaN	32.453	309	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69010	+		22940	10507	13284	13658							-0.015828821105287716
RYFPDRNVALF	11	Unmodified	_RYFPDRNVALF_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.58233284286666	3	466.582333	1396.72517	1.4614	0.00068185	-1.812	-0.00084544	-0.35063	-0.0001636	466.5813389080555	22.935	0.1928	22.935	22.838	23.031	0	1476	34	0.72837335	0.020424902	0.72837335	441.92502	0	12.392395						190	9	3	NaN	NaN	NaN	0.20668	1	20042	20042		18.429	15.392	1	24664			22941	3633	13285	13659	18213	18213					0.04267555100068421
RYFPDRNVALF	11	Unmodified	_RYFPDRNVALF_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.58233284286666	3	466.582333	1396.72517	0.82705	0.00038589	-0.9064	-0.00042291	-0.079357	-3.7027E-05	466.58190796579163	23.127	0.12039	23.114	23.017	23.138	-0.013296	1473	34	0.7302302	0.020424902	0.7287108	443.0516	0	12.392395						84	6	2	NaN	NaN	NaN	0.051747	1	19100	19100		33.301	27.367	1	11904			22942	3633	13285	13659	18214	18214					0.04267555100068421
RYFPTQALNF	10	Unmodified	_RYFPTQALNF_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.8247550356	2	628.824755	1255.63496	1.6008	0.0010067	-0.18783	-0.00011811	1.413	0.00088854	628.823908613281	25.274	0.21712	25.262	25.165	25.382	-0.012011	1140	91	0.93509084	0.05507189	0.9335714	378.64996	0	22.300476						364	10	3	NaN	NaN	NaN	0.20888	1	17140	17140		35.523	17.289	1	58803			22943	318	13286	13660	18215	18215					0.017365057716460797
RYFQPPGTW	9	Unmodified	_RYFQPPGTW_					0	0	0		ENST00000439704.1_1_7:63370572-63370830:-|nuORF;ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENSG00000169251|ENST00000351193|NMD3	ENST00000439704.1_1_7:63370572-63370830:-|nuORF	ENST00000439704.1_1_7:63370572-63370830:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2852657343501	2	576.285266	1150.55598	1.3577	0.00078242	-2.156	-0.0012425	-0.79831	-0.00046006	576.284231227629	22.476	0.24089	22.462	22.342	22.583	-0.013733	1215	94	0.8891654	0.05702758	0.88764596	360.41064	0	23.115326						331	11	2	NaN	NaN	NaN	0.18779	1	14321	14321		26.115	9.5308	1	134240			22944	4666	13287	13661	18216	18216					-0.013277214626214118
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.21450609445003	2	480.214506	958.414459	1.4824	0.00071189	-1.4463	-0.00069451	0.036184	1.7376E-05	480.21384708444157	14.813	0.31221	14.813	14.717	15.029	0	1362	40	0.79879075	0.024041891	0.79879075	324.54614	0	9.768158						301	14	4	NaN	NaN	NaN	0.084037	1	7286	7286		38.131	16.296	1	37478			22945	4653	13288	13662	18217	18217					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.21450609445003	2	480.214506	958.414459	1.4158	0.00067987	-2.1381	-0.0010268	-0.72234	-0.00034688	480.2136614689337	14.812	0.38443	14.8	14.704	15.088	-0.011738	1362	37	0.79879075	0.022191346	0.7972713	324.54614	0	9.016266						268	17	2	NaN	NaN	NaN	0.097143	1	7148	7148		36.235	14.108	1	43954			22946	4653	13288	13662	18218	18218					-0.06641139555756581
RYGDVFQI	8	Unmodified	_RYGDVFQI_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.25871663285005	2	499.258717	996.50288	1.6988	0.00084813	-1.8383	-0.00091779	-0.13953	-6.9664E-05	499.25755761187634	23.803	0.19276	23.803	23.754	23.947	0	1317	55	0.8265074	0.033236563	0.8265074	335.62576	0	13.496613						210	9	3	NaN	NaN	NaN	0.47456	1	8440	8440		32.453	11.897	1	26638			22947	241	13289	13663	18219	18219					0.004489007547249457
RYGDVFQI	8	Unmodified	_RYGDVFQI_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.25871663285005	2	499.258717	996.50288	1.3482	0.00067309	-1.372	-0.00068499	-0.023828	-1.1897E-05	499.25787774484104	23.85	0.16877	23.837	23.789	23.958	-0.013048	1317	49	0.8265074	0.0295372	0.82498795	335.62576	0	11.994354						243	8	4	NaN	NaN	NaN	0.47456	1	8271	8271		32.453	2.8544	1	29186			22948	241	13289	13663	18220	18220					0.004489007547249457
RYGGFSDRVL	10	Unmodified	_RYGGFSDRVL_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3|USP25	REV__nc|ENSG00000155313|Q9UHP3|USP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.30672945795	2	585.306729	1168.59891	1.6006	0.00093683	3.3007	0.0019319	4.9013	0.0028688	585.308540567439	20.694	0.12055	20.694	20.67	20.79	0	1215	70	0.8891654	0.042301655	0.8891654	360.34473	0	17.14325						145	6	2	NaN	NaN	NaN	0.65742	1	15448	15448		10.965	2.7203	1	18977	+		22949	10108	13290	13664	18221	18221					0.02135048594800537
RYGGFSDRVL	10	Unmodified						0	0	0			REV__nc|ENSG00000155313|Q9UHP3|USP25	REV__nc|ENSG00000155313|Q9UHP3|USP25	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.306729	1168.59891	1.6006	0.00093683	3.3007	0.0019319	4.9013	0.0028688	585.308540567439	20.694	0.12055	20.694	20.67	20.79	0	1215	70	0.8891654	0.042301655	0.8891654	360.34473		17.14325	0.0068653	-0.00080507	0.00075972	NaN	10.965	145	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18977	+		22950	10108	13290	13664							0.02135048594800537
RYGGFSDRVL	10	Unmodified						0	0	0			REV__nc|ENSG00000155313|Q9UHP3|USP25	REV__nc|ENSG00000155313|Q9UHP3|USP25	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.306729	1168.59891	1.1098	0.00064958	4.8388	0.0028322	5.9486	0.0034818	585.308145392435	20.694	0.12054	20.68	20.656	20.776	-0.014088	1215	91	0.8891654	0.055155218	0.88764596	360.3447		22.352295	-0.0068653	0.00099539	-0.00075972	NaN	10.965	139	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14573	+		22951	10108	13290	13664							0.02135048594800537
RYGGIYAAW	9	Unmodified	_RYGGIYAAW_					0	0	0		ENSG00000165782|ENST00000250489|PIP4P1;nc|ENSG00000165782|Q86T03-2|PIP4P1	ENSG00000165782|ENST00000250489|PIP4P1	ENSG00000165782|ENST00000250489|PIP4P1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.8468980491666	3	352.846898	1055.51886	1.9681	0.00069444	-2.2	-0.00077627	-0.2319	-8.1825E-05	352.84594210791096	13.421	0.28823	13.421	13.276	13.565	0	1467	61	0.7339432	0.037138224	0.7339432	446.71033	0	22.603973						252	13	3	NaN	NaN	NaN	0.42773	1	10883	10883		7.5876	0.72439	1	41893			22952	4426	13291	13665	18222	18222					-0.006673930084161839
RYGGPLGITI	10	Unmodified	_RYGGPLGITI_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1;nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.803291312	2	523.803291	1045.59203	1.5566	0.00081535	-2.4772	-0.0012976	-0.92059	-0.00048221	523.8019223001714	25.25	0.1689	25.25	25.178	25.346	0	1278	55	0.85049206	0.03319341	0.85049206	345.1445	0	13.470459						167	8	3	NaN	NaN	NaN	0.5358	1	10461	10461		17.97	0	1	18081			22953	3898	13292	13666	18223	18223					0.07105735714230832
RYGGPLGITI	10	Unmodified	_RYGGPLGITI_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1;nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.803291312	2	523.803291	1045.59203	1.6505	0.00086453	0.2238	0.00011723	1.8743	0.00098176	523.8036457254075	25.274	0.14473	25.262	25.189	25.334	-0.012011	1278	40	0.85049206	0.023969114	0.8489726	345.1445	0	9.727112						143	7	3	NaN	NaN	NaN	0.62092	1	10251	10251		13.463	3.1029	1	16290			22954	3898	13292	13666	18224	18224					0.07105735714230832
RYGKVKAL	8	Unmodified	_RYGKVKAL_					0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5832621627	1	934.583262	933.575986	1.0834	0.0010125	-1.502	-0.0014037	-0.41863	-0.00039124	934.5831540767042	41.304	0.19268	41.312	41.143	41.336	0.0082588	891	61	1.086679	0.03635657	1.0851595	220.8436	0	7.388687						291	9	2	NaN	NaN	NaN	0.84887	1	6560	6560		0.32989	0	1	38512	+		22955	8871	13293	13667	18225	18225					0.10654074267972646
RYGKVKAL	8	Unmodified	_RYGKVKAL_					0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5832621627	1	934.583262	933.575986	1.0408	0.00097271	-1.4541	-0.001359	-0.41335	-0.00038631	934.5830350009406	41.4	0.16847	41.408	41.36	41.529	0.0082588	888	58	1.088497	0.034536958	1.0869776	221.2131	0	7.018875						254	8	3	NaN	NaN	NaN	0.84887	1	6561	6561		0.32989	0	1	32030	+		22956	8871	13293	13667	18226	18226					0.10654074267972646
RYGKVKAL	8	Unmodified						0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.583262	933.575986	1.0383	0.00097041	-1.0323	-0.00096479	0.0060158	5.6222E-06	934.58314009233	41.45	0.072285	41.45	41.401	41.474	0	894	52	1.0848607	0.03090489	1.0848607	220.47408		6.280731	0.020669	0.00025935	-0.0010585	NaN	0.32989	112	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13090	+		22957	8871	13293	13667							0.10654074267972646
RYGKVKAL	8	Unmodified						0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	934.583262	933.575986	1.0408	0.00097271	-1.4541	-0.001359	-0.41335	-0.00038631	934.5830350009406	41.4	0.16847	41.408	41.36	41.529	0.0082588	888	58	1.088497	0.034536958	1.0869776	221.2131		7.018875	-0.020669	-0.00013489	0.0010585	NaN	0.32989	254	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32030	+		22958	8871	13293	13667							0.10654074267972646
RYGLFLGAIF	10	Unmodified	_RYGLFLGAIF_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8293090972501	2	578.829309	1155.64407	1.4662	0.00084869	-7.9532	-0.0046036	-6.487	-0.0037549	579.3245950091825	32.804	0.16892	32.804	32.756	32.925	0	1185	61	0.90755045	0.036746264	0.90755045	367.84363	0	14.893799						328	8	4	NaN	NaN	NaN	0.507	1	15020	15020		19.164	5.122	1	61837			22959	1320	13294	13668	18227	18227					0.07246899127994766
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7982059341	2	539.798206	1077.58186	1.2842	0.00069321	-3.0025	-0.0016208	-1.7183	-0.00092755	539.7971292679998	22.79	0.12041	22.776	22.752	22.872	-0.01354	1251	64	0.8670771	0.03867334	0.8655577	351.7392	0	15.688232						185	6	4	NaN	NaN	NaN	0.13602	1	11565	11565		30.61	4.8092	1	28257			22960	1692	13295	13669	18228	18228					0.046171279889904326
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.790380902	2	532.790381	1063.56621	2.0327	0.001083	-1.885	-0.0010043	0.14771	7.8698E-05	532.7899693541766	20.501	0.26476	20.501	20.453	20.718	0	1272	100	0.854179	0.06078559	0.854179	346.56458	0	24.662415						716	12	5	NaN	NaN	NaN	0.01452	1	11292	11292		79.199	32.159	1	393970			22961	2006	13296	13670	18229	18229					0.036968414719467546
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.790380902	2	532.790381	1063.56621	1.289	0.00068679	-0.47557	-0.00025338	0.81347	0.00043341	532.7906558277632	20.549	0.26494	20.535	20.439	20.704	-0.014141	1272	97	0.854179	0.058953166	0.8526596	346.56458	0	23.918945						615	12	5	NaN	NaN	NaN	0.0034808	1	11029	11029		106.56	34.565	1	393230			22962	2006	13296	13670	18230	18230					0.036968414719467546
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2874740723	2	541.287474	1080.5604	1.7366	0.00093997	-7.239	-0.0039184	-5.5025	-0.0029784	541.7847720345525	22.26	0.19302	22.26	22.115	22.308	0	1272	67	0.854179	0.040534675	0.854179	346.49493	0	16.442749						202	9	2	NaN	NaN	NaN	0.21199	1	12013	12013		24.562	13.392	1	27672			22963	3850	13297	13671	18231	18231					0.023337429602634074
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2874740723	2	541.287474	1080.5604	1.1237	0.00060824	-6.1696	-0.0033395	-5.0459	-0.0027313	541.2852896387406	22.259	0.096462	22.246	22.222	22.318	-0.013731	1275	55	0.85233563	0.033171892	0.8508162	345.74716	0	13.456085						131	5	2	NaN	NaN	NaN	0.44082	1	11699	11699		12.049	3.0867	1	22594			22964	3850	13297	13671	18232	18232					0.023337429602634074
RYGPIVDVY	9	Unmodified						0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.287474	1080.5604	1.4758	0.00079885	-10.302	-0.0055763	-8.8261	-0.0047774	541.7837853960938	22.187	0.048241	22.173	22.125	22.173	-0.013731	1260	46	0.8615505	0.027635753	0.8600311	349.48517		11.210358	-0.043247	-0.0020293	0.002926	NaN	24.562	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5332.2			22965	3850	13297	13671							0.023337429602634074
RYGPVVSFW	9	Unmodified	_RYGPVVSFW_					0	0	0		nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.79018393675	2	555.790184	1109.56581	0.99975	0.00055565	-1.2266	-0.00068173	-0.22685	-0.00012608	555.7888883813309	26.964	0.12064	26.964	26.94	27.06	0	1266	55	0.85786515	0.03318268	0.85786515	347.87564	0	13.455994						101	6	2	NaN	NaN	NaN	0.35794	1	13254	13254		15.463	3.414	1	12778			22966	2201	13298	13672	18233	18233					0.015414665427442742
RYGRRRMK	8	Unmodified	_RYGRRRMK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8249008088501	2	561.824901	1121.63525	2.3681	0.0013304	-8.2253	-0.0046212	-5.8572	-0.0032907	561.8206040966304	16.107	0.071869	16.094	16.023	16.094	-0.012611	1227	34	0.88180584	0.020242155	0.8802864	357.5367	0	8.207367						59	4	2	NaN	NaN	NaN	0.76633	1	13354	13354		13.737	5.4922	1	5734.6			22967	1858	13299	13673	18234	18234					0.07929647010519147
RYGSDFYSM	9	Unmodified	_RYGSDFYSM_					0	0	0		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.237123911	2	563.237124	1124.45969	1.6078	0.00090556	-0.90395	-0.00050914	0.70383	0.00039642	563.2369224680206	20.381	0.072088	20.381	20.381	20.453	0	1269	40	0.8560222	0.023958802	0.8560222	347.07187	0	9.713989						67	4	2	NaN	NaN	NaN	0.66035	1	13858	13858		2.5994	0.13793	1	7002.3			22968	5654	13300	13674	18235	18235					-0.09755657084883751
RYGSDFYSM	9	Unmodified	_RYGSDFYSM_					0	0	0		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.237123911	2	563.237124	1124.45969	1.6465	0.00092738	-0.72065	-0.0004059	0.92586	0.00052148	563.2368850829944	20.333	0.048117	20.333	20.309	20.357	0	1251	40	0.8670771	0.023943245	0.8670771	351.55405	0	9.707703						83	3	3	NaN	NaN	NaN	0.66035	1	13859	13859		2.5994	0.13793	1	10472			22969	5654	13300	13674	18236	18236					-0.09755657084883751
RYGSDFYSM	9	Unmodified	_RYGSDFYSM_					0	0	0		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.237123911	2	563.237124	1124.45969	1.398	0.0007874	-2.3871	-0.0013445	-0.98912	-0.00055711	563.2355631419443	20.405	0.14447	20.391	20.367	20.511	-0.014141	1269	40	0.8560222	0.023958802	0.85450274	347.07187	0	9.71402						100	7	2	NaN	NaN	NaN	0.46215	1	13429	13429		11.17	2.2084	1	10322			22970	5654	13300	13674	18237	18237					-0.09755657084883751
RYGSFPIFI	9	Unmodified	_RYGSFPIFI_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.3003844823	2	550.300384	1098.58622	1.3607	0.0007488	-1.0719	-0.00058986	0.28882	0.00015894	550.3001778874577	29.715	0.1448	29.715	29.667	29.811	0	1245	76	0.87076044	0.046019793	0.87076044	353.14813	0	18.66394						240	7	3	NaN	NaN	NaN	0.2345	1	12801	12801		23.118	6.7009	1	29557			22971	3531	13301	13675	18238	18238					0.040866372025675446
RYGSFPIFI	9	Unmodified	_RYGSFPIFI_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.3003844823	2	550.300384	1098.58622	1.0732	0.00059057	2.8377	0.0015616	3.9109	0.0021522	550.3025561488541	29.762	0.33778	29.755	29.586	29.924	-0.0070667	1242	79	0.87260187	0.04784769	0.8710824	353.89493	0	19.405243						338	15	2	NaN	NaN	NaN	0.27608	1	12470	12470		20.449	6.4071	1	44539			22972	3531	13301	13675	18239	18239					0.040866372025675446
RYGTGTHVW	9	Unmodified	_RYGTGTHVW_					0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7672401567	2	538.76724	1075.51993	1.2652	0.00068163	1.7631	0.0009499	3.0283	0.0016315	538.7681700796808	24.984	0.072412	24.972	24.924	24.996	-0.012392	1281	109	0.84864825	0.06638688	0.8471288	344.27167	0	26.931183						212	4	2	NaN	NaN	NaN	0.51576	1	11476	11476		8.962	1.4216	1	26948	+		22973	12422	13302	13676	18240	18240					-0.014811786394830051
RYGTGTHVW	9	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.76724	1075.51993	1.7297	0.00093188	0.67766	0.0003651	2.4073	0.001297	538.7678532243023	24.96	0.16894	24.96	24.864	25.033	0	1278	109	0.85049206	0.06638688	0.85049206	345.01965		26.931183	-0.0057613	-0.0004964	0.0016816	NaN	8.962	228	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27204	+		22974	12422	13302	13676							-0.014811786394830051
RYGTGTHVW	9	Unmodified						0	0	0			REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	REV__ENST00000485744.5_1_1:185931700-185962449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.76724	1075.51993	1.2652	0.00068163	1.7631	0.0009499	3.0283	0.0016315	538.7681700796808	24.984	0.072412	24.972	24.924	24.996	-0.012392	1281	109	0.84864825	0.06638688	0.8471288	344.27167		26.931183	0.0057613	0.00067321	-0.0016816	NaN	8.962	212	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26948	+		22975	12422	13302	13676							-0.014811786394830051
RYGVMHRNTF	10	Unmodified	_RYGVMHRNTF_					0	0	0		tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.54874620883334	3	427.548746	1279.62441	2.0241	0.00086538	-10.264	-0.0043884	-8.2401	-0.0035231	427.54471888621964	18.556	0.14392	18.556	18.532	18.676	0	1431	31	0.75620437	0.018536866	0.75620437	459.22168	0	11.2569275						118	7	3	NaN	NaN	NaN	0.65442	1	18415	18415		6.1406	0	1	13989			22976	13893	13303	13677	18241	18241					-0.00421800154435914
RYHLIVNSF	9	Unmodified	_RYHLIVNSF_					0	0	0		ENST00000545225.5_2_17:40994585-40994891:+|nuORF	ENST00000545225.5_2_17:40994585-40994891:+|nuORF	ENST00000545225.5_2_17:40994585-40994891:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.54521905506664	3	383.545219	1147.61383	1.9085	0.000732	-8.7573	-0.0033588	-6.8488	-0.0026268	383.5419012265489	15.724	0.19179	15.711	15.615	15.807	-0.012611	1386	43	0.78399014	0.025915146	0.7824707	476.67856	0	15.756805						142	9	2	NaN	NaN	NaN	0.61413	1	14236	14236		2.5994	1.2298	1	22472			22977	7518	13304	13678	18242	18242					0.04592540462795114
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.7982059341001	2	539.798206	1077.58186	1.8551	0.0010014	-1.4298	-0.00077182	0.42524	0.00022954	539.7978729451804	20.285	0.21631	20.285	20.237	20.453	0	1236	64	0.876284	0.038664997	0.876284	355.4741	0	15.6848755						384	10	4	NaN	NaN	NaN	0.011206	1	11869	11869		89.256	18.656	1	147430			22978	2190	13305	13679	18243	18243					0.0461712798901317
RYIANTVEL	9	Unmodified						0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.798206	1077.58186	1.5667	0.00084568	-0.88344	-0.00047688	0.68323	0.0003688	539.7979705526224	20.309	0.24076	20.295	20.246	20.487	-0.014141	1236	82	0.876284	0.04971218	0.8747646	355.4741		20.16629	0.0048841	0.00018114	-0.00075972	NaN	89.256	372	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143650			22979	2190	13305	13679							0.0461712798901317
RYIAQVKHL	9	Unmodified	_RYIAQVKHL_					0	0	0		ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.5609805696	3	376.560981	1126.66111	1.9328	0.00072783	-1.8761	-0.00070646	0.056759	2.1373E-05	376.5600326338817	13.469	0.21616	13.469	13.397	13.613	0	1452	40	0.74322224	0.024117589	0.74322224	451.99057	0	14.667114						230	10	4	NaN	NaN	NaN	0.032764	1	13982	13982		40.957	26.532	1	40390			22980	6332	13306	13680	18244	18244					0.10284819733806216
RYIAQVKHL	9	Unmodified	_RYIAQVKHL_					0	0	0		ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	ENST00000267068.5_2_13:33110791-33110824:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.5609805696	3	376.560981	1126.66111	1.5217	0.00057302	-1.5085	-0.00056806	0.013189	4.9666E-06	376.56018450024277	14.189	0.11977	14.177	14.177	14.297	-0.011219	1452	31	0.74322224	0.018552959	0.7417028	451.99057	0	11.2829895						113	6	3	NaN	NaN	NaN	0.49672	1	13536	13536		5.9198	3.8172	1	10644			22981	6332	13306	13680	18245	18245					0.10284819733806216
RYIDIYPYIL	10	Unmodified	_RYIDIYPYIL_					0	0	0		ENST00000371514.7_1_1:53516408-53516477:+|nuORF	ENST00000371514.7_1_1:53516408-53516477:+|nuORF	ENST00000371514.7_1_1:53516408-53516477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.86608853405	2	664.866089	1327.71762	1.814	0.0012061	-7.0931	-0.004716	-5.2792	-0.0035099	664.8630955676277	30.39	0.096525	30.383	30.335	30.431	-0.0064106	1074	43	0.9754029	0.025625527	0.97388345	394.7404	0	10.370483						67	5	2	NaN	NaN	NaN	0.65742	1	18365	18365		10.965	3.9808	1	4779.2			22982	6658	13307	13681	18246	18246					0.06687402779789409
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8485644829001	2	616.848564	1231.68258	0.93319	0.00057564	-5.6762	-0.0035014	-4.743	-0.0029257	616.8452873581016	21.127	0.21666	21.127	20.983	21.2	0	1128	49	0.9424274	0.029343128	0.9424274	381.70154	0	11.884552						231	10	4	NaN	NaN	NaN	0.061945	1	17323	17323		41.839	20.067	1	31190			22983	4933	13308	13682	18247	18247					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.56813514413335	3	411.568135	1231.68258	1.6872	0.00069438	-2.6914	-0.0011077	-1.0042	-0.00041331	411.5671838801913	21.127	0.36117	21.127	21.031	21.392	0	1428	55	0.7580582	0.03336644	0.7580582	460.5384	0	20.270905						683	16	4	NaN	NaN	NaN	0.013959	1	17324	17324		64.375	12.908	1	393500			22984	4933	13308	13682	18248	18248					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.56813514413335	3	411.568135	1231.68258	1.1347	0.00046701	-1.924	-0.00079186	-0.7893	-0.00032485	411.5671633536977	22.042	0.14448	22.029	21.908	22.053	-0.013731	1431	43	0.75620437	0.025951624	0.7546849	459.41217	0	15.766266						204	7	3	NaN	NaN	NaN	0.084037	1	16600	16600		33.907	14.315	1	71765			22985	4933	13308	13682	18249	18249					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	411.56813514413335	3	411.568135	1231.68258	1.1711	0.000482	-0.092591	-3.8107E-05	1.0785	0.00044389	411.5684122556748	21.85	0.21665	21.836	21.643	21.86	-0.013895	1431	40	0.75620437	0.02409923	0.7546849	459.41214	0	14.640869						181	10	2	NaN	NaN	NaN	0.097143	1	16602	16602		32.377	13.213	1	36724			22986	4933	13308	13682	18250	18250					0.07600204762502472
RYIDRIHIF	9	Unmodified						0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	411.568135	1231.68258	1.3747	0.00056579	-3.9738	-0.0016355	-2.599	-0.0010697	411.56697503926955	21.464	0.048195	21.464	21.44	21.488	0	1431	34	0.75620437	0.020393908	0.75620437	459.41217		12.3897705	-0.18571	-0.0041071	0.00075972	NaN	32.377	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6634.6			22987	4933	13308	13682							0.07600204762502472
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.59093978286666	3	460.59094	1378.75099	1.7136	0.00078925	-2.3288	-0.0010726	-0.61527	-0.00028339	460.58985855343735	24.985	0.48258	24.985	24.888	25.371	0	1395	64	0.7784366	0.03888321	0.7784366	472.3601	0	23.594574						1002	21	5	NaN	NaN	NaN	0.023906	1	19882	19882		62.076	44.081	1	974440			22988	4933	13309	13683	18251	18251					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.382771441	2	690.382771	1378.75099	1.833	0.0012655	-2.2896	-0.0015807	-0.45656	-0.0003152	690.3809420462705	25.009	0.16892	25.009	24.936	25.105	0	1056	46	0.9863805	0.027433634	0.9863805	399.0307	0	11.098022						282	8	4	NaN	NaN	NaN	0.53519	1	19883	19883		27.046	18.769	1	48024			22989	4933	13309	13683	18252	18252					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.59093978286666	3	460.59094	1378.75099	1.3986	0.0006442	-7.4322	-0.0034232	-6.0336	-0.002779	460.9229510017207	28.942	0.09651	28.933	28.933	29.03	-0.0083485	1395	28	0.7784366	0.016666055	0.77691716	472.3601	0	10.113068						50	5	2	NaN	NaN	NaN	0.66854	1	18944	18944		10.204	6.2951	1	3133.7			22990	4933	13309	13683	18253	18253					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.382771441	2	690.382771	1378.75099	1.2014	0.00082943	-5.0643	-0.0034963	-3.8629	-0.0026669	690.3791782464597	27.011	0.16896	27.001	26.856	27.025	-0.010126	1059	34	0.98455137	0.020120203	0.9830319	398.29077	0	8.139435						97	8	2	NaN	NaN	NaN	0.65008	1	18945	18945		13.949	6.2662	1	8756.7			22991	4933	13309	13683	18254	18254					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.59093978286666	3	460.59094	1378.75099	1.0593	0.0004879	-1.6706	-0.00076948	-0.61134	-0.00028158	460.59017012659564	27.132	0.38616	27.122	26.808	27.194	-0.010126	1395	49	0.7784366	0.029620469	0.77691716	472.36008	0	17.973877						395	17	3	NaN	NaN	NaN	0.43212	1	18947	18947		22.269	16.335	1	279480			22992	4933	13309	13683	18255	18255					0.07676449342352498
RYIDRIHIFF	10	Unmodified	_RYIDRIHIFF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.59093978286666	3	460.59094	1378.75099	0.78643	0.00036222	-0.51134	-0.00023552	0.27508	0.0001267	460.59066892132273	28.363	0.14481	28.354	28.33	28.474	-0.0089779	1395	31	0.7784366	0.018514812	0.77691716	472.36008	0	11.234894						80	7	2	NaN	NaN	NaN	0.77292	1	18949	18949		2.239	1.5307	1	8455.2			22993	4933	13309	13683	18256	18256					0.07676449342352498
RYIDTHNRV	9	Unmodified	_RYIDTHNRV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.87562779763334	3	391.875628	1172.60505	1.2582	0.00049304	-1.6883	-0.00066162	-0.43019	-0.00016858	391.8751073659001	12.1	0.14411	12.1	12.076	12.22	0	1467	34	0.7339432	0.020418286	0.7339432	446.13644	0	12.411499						111	7	3	NaN	NaN	NaN	0.19435	1	15576	15576		25.694	13.388	1	12490			22994	3522	13310	13684	18257	18257					0.025655668263198095
RYIDTHNRV	9	Unmodified	_RYIDTHNRV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.87562779763334	3	391.875628	1172.60505	1.9519	0.00076491	-3.1987	-0.0012535	-1.2468	-0.00048857	391.87343732153124	12.462	0.07209	12.453	12.453	12.525	-0.0088415	1470	25	0.7320868	0.014850438	0.73056734	445.008	0	9.027039						40	4	2	NaN	NaN	NaN	0.11323	1	15020	15020		33.907	16.709	1	2836			22995	3522	13310	13684	18258	18258					0.025655668263198095
RYIDTHNRV	9	Unmodified	_RYIDTHNRV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.87562779763334	3	391.875628	1172.60505	1.3932	0.00054596	-1.4221	-0.0005573	-0.028947	-1.1344E-05	391.8748990103153	12.366	0.11994	12.357	12.285	12.405	-0.0088415	1467	28	0.7339432	0.016704082	0.7324238	446.13644	0	10.153748						76	6	2	NaN	NaN	NaN	0.12381	1	15021	15021		32.377	16.151	1	6277.3			22996	3522	13310	13684	18259	18259					0.025655668263198095
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.2255978994666	3	391.225598	1170.65496	1.6696	0.00065318	-3.7271	-0.0014581	-2.0575	-0.00080495	391.22412505663846	23.393	0.12056	23.393	23.345	23.465	0	1431	64	0.75620437	0.038933814	0.75620437	459.67706	0	23.66687						176	6	2	NaN	NaN	NaN	0.012648	1	15515	15515		63.731	27.496	1	29348			22997	1981	13311	13685	18260	18260					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3347586159	2	586.334759	1170.65496	2.2754	0.0013341	-1.9222	-0.001127	0.35323	0.00020711	586.3335239352821	23.369	0.16889	23.369	23.32	23.489	0	1167	46	0.91857195	0.027546287	0.91857195	372.25446	0	11.163239						261	8	5	NaN	NaN	NaN	0.028349	1	15516	15516		61.271	26.832	1	90188			22998	1981	13311	13685	18261	18261					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.2255978994666	3	391.225598	1170.65496	1.6975	0.00066409	-2.6476	-0.0010358	-0.95015	-0.00037172	391.22472924268874	23.634	0.28922	23.621	23.5	23.789	-0.013048	1431	61	0.75620437	0.03707385	0.7546849	459.67706	0	22.536194						250	13	3	NaN	NaN	NaN	0.0047854	1	14973	14973		97.85	54.855	1	25159			22999	1981	13311	13685	18262	18262					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3347586159	2	586.334759	1170.65496	1.7454	0.0010234	-1.9356	-0.0011349	-0.19018	-0.00011151	586.8352737162077	23.682	0.33744	23.669	23.524	23.861	-0.013048	1170	55	0.91673553	0.033053815	0.9152161	371.51025	0	13.395172						293	15	2	NaN	NaN	NaN	0.021105	1	14974	14974		70.6	32.469	1	65229			23000	1981	13311	13685	18263	18263					0.07646301502268216
RYIFASNLY	9	Unmodified	_RYIFASNLY_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.80074862305	2	573.800749	1145.58694	1.5226	0.00087367	0.11187	6.4193E-05	1.6345	0.00093786	573.8008289300325	24.019	0.28958	24.019	23.923	24.213	0	1194	67	0.902037	0.040455878	0.902037	365.64676	0	16.399048						221	13	2	NaN	NaN	NaN	0.25448	1	14653	14653		21.835	7.7934	1	25168			23001	3904	13312	13686	18264	18264					0.01997431851600595
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.82528635185	2	644.825286	1287.63602	1.8328	0.0011818	-1.5712	-0.0010132	0.26155	0.00016865	644.8242556618214	15.222	0.1922	15.222	15.174	15.366	0	1140	37	0.93509084	0.022012115	0.93509084	378.5476	0	8.911041						152	9	3	NaN	NaN	NaN	0.24049	1	18562	18562		38.269	27.909	1	12562			23002	783	13313	13687	18265	18265					0.003707201405404703
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.2192830567666	3	430.219283	1287.63602	1.7576	0.00075617	-1.9369	-0.0008333	-0.17926	-7.7123E-05	430.21938455707715	15.46	0.1199	15.448	15.352	15.472	-0.012202	1377	28	0.7895419	0.01665157	0.78802246	479.43475	0	10.111359						65	6	2	NaN	NaN	NaN	0.76872	1	17734	17734		3.261	2.5449	1	4318.8			23003	783	13313	13687	18266	18266					0.003707201405404703
RYIHPQQEAF	10	Unmodified						0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	430.219283	1287.63602	1.2948	0.00055705	-2.0079	-0.00086386	-0.71313	-0.0003068	430.21849645045586	15.222	0.096076	15.222	15.198	15.294	0	1377	37	0.7895419	0.022203326	0.7895419	479.43475		13.482574	-0.11312	-2.8299E-05	0.00075972	NaN	3.261	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6068.6			23004	783	13313	13687							0.003707201405404703
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.8320487514501	2	553.832049	1105.64954	1.5956	0.00088369	-2.0043	-0.00111	-0.40866	-0.00022633	553.8311548997092	19.515	0.48118	19.5	19.332	19.813	-0.014141	1161	73	0.9222442	0.04408604	0.92072475	373.99844	0	17.878235						449	21	2	NaN	NaN	NaN	0.064504	1	12744	12744		40.957	10.347	1	97065			23005	1918	13314	13688	18267	18267					0.10094577919812764
RYIKALETL	9	Unmodified						0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.832049	1105.64954	1.5793	0.00087466	-1.6678	-0.00092371	-0.088566	-4.9051E-05	553.8313523849467	19.108	0.26392	19.108	19.036	19.3	0	1161	79	0.9222442	0.04775989	0.9222442	373.99844		19.368103	-0.19611	0.00026403	0.00075972	NaN	40.957	353	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96980			23006	1918	13314	13688							0.10094577919812764
RYILEPFFI	9	Unmodified	_RYILEPFFI_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.33696695385	2	599.336967	1196.65938	1.275	0.00076417	-1.8808	-0.0011272	-0.60573	-0.00036304	599.335987709799	32.732	0.14476	32.732	32.683	32.828	0	1152	82	0.92775106	0.049583375	0.92775106	375.87918	0	20.088776						447	7	5	NaN	NaN	NaN	0.042816	1	16366	16366		49.961	25	1	181340			23007	3721	13315	13689	18268	18268					0.0689176592518379
RYILEPFFI	9	Unmodified						0	0	0		ENSG00000151012|ENST00000280612|SLC7A11;SLC7A11|p.Q157E|1|0.12|ENSG00000151012|chr4:138232318-138232318|G/C|missense_variant	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.336967	1196.65938	1.0017	0.00060038	-1.9618	-0.0011758	-0.96004	-0.00057539	599.3355482585936	32.827	0.28955	32.824	32.727	33.017	-0.0031052	1152	88	0.92775106	0.053233266	0.9262317	375.87918		21.567505	0.046183	-6.0833E-05	-0.00075972	NaN	49.961	691	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206630			23008	3721	13315	13689							0.0689176592518379
RYILGSHVW	9	Unmodified	_RYILGSHVW_					0	0	0			REV__ENST00000356978.8_1_14:90872859-90873063:+|nuORF	REV__ENST00000356978.8_1_14:90872859-90873063:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.5416974929667	3	377.541697	1129.60326	1.9408	0.00073275	6.4509	0.0024355	8.3918	0.0031682	377.5438507699068	13.949	0.16802	13.949	13.877	14.045	0	1440	37	0.7506418	0.02225393	0.7506418	456.4884	0	13.533295						162	8	3	NaN	NaN	NaN	0.66196	1	14075	14075		1.1768	0.61142	1	18859	+		23009	11821	13316	13690	18269	18269					0.043645578083669534
RYINFKMANL	10	Unmodified	_RYINFKMANL_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3422576845002	2	635.342258	1268.66996	1.7608	0.0011187	-2.5442	-0.0016164	-0.78334	-0.00049769	635.3407823094957	21.73	0.096312	21.73	21.705	21.802	0	1128	37	0.9424274	0.022005022	0.9424274	381.57816	0	8.909576						101	5	3	NaN	NaN	NaN	0.34693	1	18211	18211		25.801	11.759	1	10141			23010	1490	13317	13691	18270	18270					0.046374253079875416
RYINNPLLI	9	Unmodified	_RYINNPLLI_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.3322159269501	2	558.332216	1114.64988	1.7344	0.00096839	-0.67065	-0.00037445	1.0638	0.00059394	558.3319044635845	25.298	0.1689	25.298	25.25	25.419	0	1224	61	0.883646	0.036790013	0.883646	358.31006	0	14.917999						194	8	4	NaN	NaN	NaN	0.16171	1	13477	13477		27.789	11.205	1	34784			23011	2224	13318	13692	18271	18271					0.0971399763966474
RYINNPLLI	9	Unmodified						0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.332216	1114.64988	1.7572	0.00098108	0.83865	0.00046824	2.5958	0.0014493	558.3326507315433	25.37	0.19304	25.358	25.286	25.479	-0.012011	1224	55	0.883646	0.033114612	0.88212657	358.31003		13.427643	0.030043	0.00093004	-0.00075972	NaN	27.789	185	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28403			23012	2224	13318	13692							0.0971399763966474
RYIPHPFLV	9	Unmodified	_RYIPHPFLV_					0	0	0		nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	nc|ENSG00000107036|Q4ADV7-2|RIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.32947627275	2	571.329476	1140.6444	1.9294	0.0011023	-3.7975	-0.0021696	-1.8681	-0.0010673	571.3270584625533	21.946	0.096485	21.946	21.874	21.97	0	1095	28	0.9625867	0.016483307	0.9625867	390.2111	0	6.681946						60	5	2	NaN	NaN	NaN	0.12945	1	14483	14483		31.561	16.386	1	4192.2			23013	1623	13319	13693	18272	18272					0.07970318847810631
RYIPLIVDI	9	Unmodified	_RYIPLIVDI_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.33696695385	2	551.336967	1100.65938	1.0731	0.00059163	-1.2998	-0.00071665	-0.22675	-0.00012502	551.3367692965661	29.329	0.072388	29.329	29.305	29.377	0	1239	70	0.87444305	0.042324543	0.87444305	354.6334	0	17.164856						176	4	3	NaN	NaN	NaN	0.21199	1	12880	12880		24.562	10.137	1	22349			23014	1652	13320	13694	18273	18273					0.11307765925175772
RYIPLIVDI	9	Unmodified						0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	551.336967	1100.65938	1.0534	0.00058077	-0.6545	-0.00036085	0.39889	0.00021992	551.3371196612621	29.376	0.12064	29.368	29.344	29.465	-0.0077229	1215	70	0.8891654	0.042319894	0.88764596	360.6041		17.162964	0.019867	0.00032627	0.0066015	NaN	24.562	213	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23589			23015	1652	13320	13694							0.11307765925175772
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.5465423053998	1	1009.54654	1008.53927	1.4612	0.0014752	0.30591	0.00030883	1.7671	0.001784	1009.546834719371	20.862	0.14453	20.862	20.814	20.959	0	243	79	1.4749115	0.04620564	1.4749115	299.41928	0	9.380127						234	7	4	NaN	NaN	NaN	0.084037	1	8928	8928		38.131	17.682	1	34470			23016	622;693	13321	13695	18274	18274					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.2769093859999	2	505.276909	1008.53927	2.1294	0.001076	-0.2211	-0.00011172	1.9083	0.00096424	505.27707212919256	20.862	0.554	20.862	20.67	21.224	0	1308	127	0.83204526	0.0775184	0.83204526	337.81967	0	31.473358						1401	24	5	NaN	NaN	NaN	0.0084155	1	8929	8929		95.62	56.161	1	1274600			23017	622;693	13321	13695	18275	18275					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5465423053998	1	1009.54654	1008.53927	1.175	0.0011862	0.55033	0.00055559	1.7253	0.0017418	1009.5471798462813	20.911	0.19254	20.897	20.801	20.993	-0.014086	240	79	1.4766881	0.046210527	1.4751687	299.77994	0	9.381134						276	9	3	NaN	NaN	NaN	0.03618	1	8756	8756		52.78	19.081	1	39518			23018	622;693	13321	13695	18276	18276					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.2769093859999	2	505.276909	1008.53927	1.7264	0.00087229	0.40307	0.00020366	2.1294	0.001076	505.2773681260411	20.911	0.45743	20.897	20.704	21.162	-0.014086	1305	100	0.83389086	0.060871065	0.8323714	338.56897	0	24.714325						1357	20	5	NaN	NaN	NaN	0.0018626	1	8757	8757		111.43	53.198	1	1347400			23019	622;693	13321	13695	18277	18277					0.035337776513983954
RYIQPWESEF	10	Unmodified	_RYIQPWESEF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.82495200085	2	677.824952	1353.63535	1.1587	0.00078537	-1.4304	-0.00096959	-0.27177	-0.00018421	677.8241811887622	24.502	0.12052	24.502	24.454	24.574	0	1131	76	0.94059354	0.045831382	0.94059354	380.57812	0	18.544037						214	6	4	NaN	NaN	NaN	0.026551	1	19588	19588		60.984	41.82	1	30939			23020	4933	13322	13696	18278	18278					-0.0273211929916215
RYIQPWESEF	10	Unmodified	_RYIQPWESEF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.82495200085	2	677.824952	1353.63535	1.0637	0.00072098	-0.96199	-0.00065206	0.10168	6.8924E-05	677.8234074801202	24.526	0.12067	24.514	24.489	24.61	-0.012392	1128	58	0.9424274	0.034839332	0.94090796	381.32013	0	14.096527						214	6	4	NaN	NaN	NaN	0.011581	1	18708	18708		69.233	44.833	1	29108			23021	4933	13322	13696	18279	18279					-0.0273211929916215
RYIQWVEENF	10	Unmodified	_RYIQWVEENF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3382265516	2	692.338227	1382.6619	2.0083	0.0013904	-2.0664	-0.0014306	-0.05809	-4.0218E-05	692.3366950037148	25.805	0.096533	25.805	25.781	25.877	0	1092	40	0.9644182	0.023806632	0.9644182	390.1351	0	9.630463						117	5	3	NaN	NaN	NaN	0.63397	1	19915	19915		12.57	5.5854	1	10907			23022	4684	13323	13697	18280	18280					-0.014124304078222849
RYISDQLFTNF	11	Unmodified	_RYISDQLFTNF_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.35133392685	2	702.351334	1402.68811	0.98663	0.00069296	-2.1892	-0.0015376	-1.2026	-0.00084464	702.3498945896141	27.229	0.12062	27.229	27.205	27.326	0	1077	64	0.9735726	0.038432002	0.9735726	393.78265	0	15.544647						233	6	3	NaN	NaN	NaN	0.048526	1	20086	20086		50.211	33.013	1	42878			23023	1634	13324	13698	18281	18281					0.00287838763642867
RYISDQLFTNF	11	Unmodified	_RYISDQLFTNF_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.35133392685	2	702.351334	1402.68811	0.76364	0.00053635	-0.89034	-0.00062533	-0.12669	-8.8983E-05	702.3503681918617	27.253	0.2896	27.242	27.146	27.436	-0.010126	1077	58	0.9735726	0.0347718	0.9720532	393.78265	0	14.064209						332	13	4	NaN	NaN	NaN	6.269E-05	1	19138	19138		88.524	46.685	1	45092			23024	1634	13324	13698	18282	18282					0.00287838763642867
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8189413762001	2	543.818941	1085.62333	1.642	0.00089293	0.53963	0.00029346	2.1816	0.0011864	543.818729149387	22.621	0.096504	22.621	22.597	22.694	0	1239	55	0.87444305	0.03313607	0.87444305	354.6941	0	13.440735						146	5	3	NaN	NaN	NaN	0.13602	1	12218	12218		30.61	16.185	1	18748			23025	2080	13325	13699	18283	18283					0.08394308748324875
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.8189413762001	2	543.818941	1085.62333	1.355	0.00073688	1.9501	0.0010605	3.3051	0.0017974	543.8198774838213	22.669	0.096493	22.655	22.631	22.728	-0.01354	1239	55	0.87444305	0.033132493	0.8729236	354.6941	0	13.439301						157	5	3	NaN	NaN	NaN	0.089764	1	11909	11909		37.302	12.74	1	19442			23026	2080	13325	13699	18284	18284					0.08394308748324875
RYIYNREEF	9	Unmodified	_RYIYNREEF_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.31729414425	2	645.317294	1288.62004	2.0175	0.0013019	-2.1979	-0.0014184	-0.18043	-0.00011643	645.3164455953327	16.374	0.095924	16.374	16.326	16.422	0	1149	43	0.92958635	0.025691867	0.92958635	376.3162	0	10.400604						103	5	2	NaN	NaN	NaN	0.34922	1	18568	18568		15.822	4.8568	1	14519			23027	6018	13326	13700	18285	18285					-0.012729860963418105
RYIYNREEF	9	Unmodified	_RYIYNREEF_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.54728825169997	3	430.547288	1288.62004	1.6833	0.00072475	-1.2755	-0.00054916	0.40783	0.00017559	430.54682291025165	16.563	0.11988	16.55	16.502	16.621	-0.012993	1500	64	0.71351165	0.039005756	0.7119922	433.26328	0	23.685333						99	6	2	NaN	NaN	NaN	0.25548	1	17739	17739		19.592	10.021	1	6883.5			23028	6018	13326	13700	18286	18286					-0.012729860963418105
RYIYNREEF	9	Unmodified	_RYIYNREEF_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.31729414425	2	645.317294	1288.62004	2.2012	0.0014205	-1.5726	-0.0010148	0.62867	0.00040569	645.3164083290626	16.587	0.28762	16.574	16.454	16.741	-0.012995	1149	43	0.92958635	0.025689125	0.9280669	376.3162	0	10.399506						244	13	3	NaN	NaN	NaN	0.2961	1	17740	17740		19.164	3.7009	1	19863			23029	6018	13326	13700	18287	18287					-0.012729860963418105
RYIYNREEF	9	Unmodified						0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	430.547288	1288.62004	1.4418	0.00062075	-0.83138	-0.00035795	0.61038	0.0002628	430.5470250103627	16.35	0.095938	16.35	16.35	16.446	0	1497	64	0.71537006	0.039005756	0.71537006	434.39175		23.685333	-0.099839	0.00023417	0.0016889	NaN	19.592	132	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10303			23030	6018	13326	13700							-0.012729860963418105
RYKAPFHQL	9	Unmodified	_RYKAPFHQL_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.21721386013337	3	387.217214	1158.62981	1.1579	0.00044837	-1.7049	-0.00066015	-0.54695	-0.00021179	387.55059484170135	14.717	0.12004	14.717	14.669	14.789	0	1446	28	0.7469324	0.016694963	0.7469324	454.09564	0	10.149658						74	6	2	NaN	NaN	NaN	0.5168	1	15106	15106		8.9191	5.3246	1	7696.1			23031	3799	13327	13701	18288	18288					0.056842466997068186
RYKEENNDHL	10	Unmodified	_RYKEENNDHL_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.8775855439333	3	439.877586	1316.61093	1.21	0.00053227	0.014932	6.5682E-06	1.225	0.00053884	439.8780212094662	11.166	0.11983	11.159	11.063	11.183	-0.0071888	1434	31	0.75435036	0.018538952	0.7528309	457.95853	0	11.254791						88	6	2	NaN	NaN	NaN	0.0002722	1	18209	18209		82.991	62.736	1	10452			23032	3163	13328	13702	18289	18289					-0.03471379452662404
RYKFYLENL	9	Unmodified	_RYKFYLENL_					0	0	0		ENST00000494463.1_1_1:160606951-160616738:-|nuORF;nc|ENSG00000117090|Q13291-2|SLAMF1;nc|ENSG00000117090|Q13291-3|SLAMF1;ENSG00000117090|ENST00000302035|SLAMF1;nc|ENSG00000117090|Q13291-4|SLAMF1	ENST00000494463.1_1_1:160606951-160616738:-|nuORF	ENST00000494463.1_1_1:160606951-160616738:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.89239587630004	3	415.892396	1244.65536	1.8849	0.0007839	-2.9723	-0.0012362	-1.0874	-0.00045225	415.89117841986865	15.82	0.071887	15.807	15.783	15.855	-0.012611	1479	52	0.72651637	0.031565785	0.7249969	441.32507	0	19.174774						76	4	2	NaN	NaN	NaN	0.65818	1	16892	16892		1.3312	0.51982	1	8545.5			23033	2126	13329	13703	18290	18290					0.0428167643146935
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.8767458121	3	421.876746	1262.60841	1.539	0.00064928	-2.7664	-0.0011671	-1.2274	-0.00051782	421.8751611300236	20.959	0.26472	20.959	20.911	21.175	0	1509	85	0.70793515	0.052033067	0.70793515	429.97086	0	31.602753						678	12	5	NaN	NaN	NaN	0.41164	1	18051	18051		14.45	3.5881	1	164350			23034	4451	13330	13704	18291	18291					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3114804848501	2	632.31148	1262.60841	1.7423	0.0011017	-2.0116	-0.0012719	-0.26927	-0.00017026	632.3099419859734	20.959	0.43345	20.959	20.79	21.224	0	1107	85	0.9552588	0.051333904	0.9552588	386.79343	0	20.785614						653	19	4	NaN	NaN	NaN	0.0049332	1	18052	18052		77.761	55.926	1	201360			23035	4451	13330	13704	18292	18292					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.8767458121	3	421.876746	1262.60841	1.1646	0.00049131	-2.3553	-0.00099364	-1.1907	-0.00050234	421.87542282818646	21.128	0.33697	21.114	21.017	21.354	-0.014004	1506	106	0.70979416	0.06501663	0.7082747	431.09998	0	39.488464						779	15	4	NaN	NaN	NaN	0.13684	1	17266	17266		28.236	14.06	1	158980			23036	4451	13330	13704	18293	18293					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3114804848501	2	632.31148	1262.60841	1.534	0.00096996	-2.0147	-0.0012739	-0.48068	-0.00030394	632.3099539382697	21.128	0.4573	21.114	21.017	21.475	-0.014004	1107	85	0.9552588	0.051333904	0.9537394	386.79343	0	20.785614						603	20	3	NaN	NaN	NaN	0.038721	1	17267	17267		55.958	30.157	1	203760			23037	4451	13330	13704	18294	18294					-0.012391831196737257
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.5497527729666	3	426.549753	1276.62743	1.2288	0.00052414	-1.5641	-0.00066718	-0.33535	-0.00014304	426.54911682292686	21.2	0.1927	21.2	21.127	21.32	0	1506	46	0.70979416	0.027888477	0.70979416	431.04883	0	16.93631						243	9	4	NaN	NaN	NaN	0.17328	1	18356	18356		27.046	20.429	1	34082			23038	5678;276	13331	13705	18295	18295					0.000180301797172433
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.32099092615	2	639.320991	1276.62743	1.7641	0.0011278	-1.7659	-0.001129	-0.0018317	-1.1711E-06	639.3199649052468	21.175	0.313	21.175	21.127	21.44	0	1110	73	0.95342636	0.044005275	0.95342636	386.00558	0	17.81604						533	14	4	NaN	NaN	NaN	0.050761	1	18357	18357		60.982	40.468	1	89729			23039	5678;276	13331	13705	18296	18296					0.000180301797172433
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.5497527729666	3	426.549753	1276.62743	1.2425	0.00052998	-0.87681	-0.000374	0.36567	0.00015598	426.5498501147247	21.2	0.096392	21.2	21.127	21.224	0	1428	34	0.7580582	0.020389438	0.7580582	460.35892	0	12.382263						65	5	2	NaN	NaN	NaN	0.67515	1	18358	18358		1.3312	0.10222	1	4838.9			23040	5678;276	13331	13705	18297	18297					0.000180301797172433
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	639.32099092615	2	639.320991	1276.62743	2.007	0.0012831	-1.8484	-0.0011817	0.15864	0.00010142	639.319873247401	21.561	0.40932	21.547	21.33	21.74	-0.013895	1113	61	0.9515937	0.036663115	0.95007426	385.2636	0	14.843506						498	18	3	NaN	NaN	NaN	0.53237	1	17538	17538		13.003	6.5729	1	78614			23041	5678;276	13331	13705	18298	18298					0.000180301797172433
RYKLYQEMF	9	Oxidation (M)	_RYKLYQEM(Oxidation (M))F_		RYKLYQEM(1)F		RYKLYQEM(67)F	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3184482372	2	647.318448	1292.62234	2.4336	0.0015753	-2.809	-0.0018183	-0.37537	-0.00024298	647.3170559218842	18.338	0.408	18.324	18.204	18.612	-0.01395	1113	73	0.9515937	0.044000506	0.95007426	385.2126	0	17.811768						577	18	4	NaN	NaN	NaN	0.024221	1	17792	17792		66.656	38.161	1	127520			23042	5678;276	13331	13706	18299	18299		22			-0.01226273682914325
RYKQDVERF	9	Unmodified	_RYKQDVERF_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.2192830567666	3	414.219283	1239.63602	0.81776	0.00033873	-0.098345	-4.0737E-05	0.71942	0.000298	414.21902856583614	12.796	0.19214	12.796	12.724	12.916	0	1446	37	0.7469324	0.022258759	0.7469324	453.74698	0	13.521759						150	9	3	NaN	NaN	NaN	0.015029	1	17517	17517		61.575	44.376	1	11188			23043	5830	13332	13707	18300	18300					0.025787201405364613
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8345914404	2	593.834591	1185.65463	1.6515	0.00098073	-2.6196	-0.0015556	-0.96804	-0.00057485	593.8331539305574	26.432	0.2896	26.432	26.36	26.65	0	1122	46	0.9460945	0.027498782	0.9460945	383.3516	0	11.1423645						304	13	4	NaN	NaN	NaN	0.32672	1	16039	16039		19.164	10.919	1	58238			23044	3754	13333	13708	18301	18301					0.06922881782406876
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.8345914404	2	593.834591	1185.65463	0.74526	0.00044256	-2.1451	-0.0012738	-1.3998	-0.00083127	593.833414241369	26.963	0.12065	26.952	26.88	27.001	-0.010645	1122	37	0.9460945	0.022000253	0.9445751	383.3516	0	8.914337						132	6	3	NaN	NaN	NaN	0.097143	1	15425	15425		34.439	15.32	1	17411			23045	3754	13333	13708	18302	18302					0.06922881782406876
RYKVFVDLF	9	Unmodified						0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.834591	1185.65463	0.829	0.00049229	-2.0171	-0.0011978	-1.1881	-0.00070554	593.8332027610538	26.842	0.16894	26.832	26.687	26.856	-0.010645	1107	52	0.9552588	0.031158626	0.9537394	387.0649		12.625275	0.19964	0.00051649	0.0038224	NaN	19.164	130	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10927			23046	3754	13333	13708							0.06922881782406876
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3031241365001	2	531.303124	1060.5917	2.3041	0.0012242	-1.9748	-0.0010492	0.32924	0.00017492	531.3021665550503	25.781	0.19301	25.781	25.684	25.877	0	1245	76	0.87076044	0.0460248	0.87076044	353.3048	0	18.674225						320	9	4	NaN	NaN	NaN	0.032826	1	11144	11144		55.413	12.418	1	68352			23047	2657	13334	13709	18303	18303					0.06382315994369492
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3031241365001	2	531.303124	1060.5917	1.6587	0.00088125	-0.65385	-0.00034739	1.0048	0.00053385	531.3029662736548	25.805	0.24133	25.793	25.672	25.914	-0.0116	1239	73	0.87444305	0.044186175	0.8729236	354.79898	0	17.928223						379	11	4	NaN	NaN	NaN	0.032826	1	10896	10896		55.413	15.259	1	63394			23048	2657	13334	13709	18304	18304					0.06382315994369492
RYLAEKYEW	9	Unmodified	_RYLAEKYEW_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.316762828	2	629.316763	1256.61897	2.1764	0.0013697	-0.62758	-0.00039494	1.5488	0.00097471	629.3168613844728	18.652	0.11988	18.652	18.628	18.748	0	1134	40	0.9387595	0.023842633	0.9387595	380.1323	0	9.654602						146	6	3	NaN	NaN	NaN	0.37272	1	17929	17929		14.854	2.8053	1	13035			23049	4557	13335	13710	18305	18305					0.0009279953474106151
RYLAEKYEW	9	Unmodified						0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	629.316763	1256.61897	3.1502	0.0019825	-0.5373	-0.00033813	2.6129	0.0016443	629.3180406423796	19.034	0.048071	19.02	18.972	19.02	-0.014059	1134	25	0.9387595	0.014671564	0.93724006	380.1323		5.940979	0.18376	8.8617E-05	-0.00075972	NaN	14.854	28	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1387.8			23050	4557	13335	13710							0.0009279953474106151
RYLAYRNFMID	11	Unmodified	_RYLAYRNFMID_					0	0	0		ENST00000483847.1_1_3:47712102-47719818:-|nuORF	ENST00000483847.1_1_3:47712102-47719818:-|nuORF	ENST00000483847.1_1_3:47712102-47719818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.91509465636665	3	487.915095	1460.72345	1.7706	0.00086393	1.5061	0.00073486	3.2768	0.0015988	487.91602865784057	23.561	0.16872	23.548	23.5	23.669	-0.013048	1359	37	0.8006399	0.02219367	0.7991205	485.5628	0	13.459778						102	8	2	NaN	NaN	NaN	0.74155	1	19448	19448		1.8502	0.16965	1	14630			23051	7223	13336	13711	18306	18306					0.0115217801981089
RYLDASNEL	9	Unmodified	_RYLDASNEL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7696454599001	2	540.769645	1079.52474	2.1866	0.0011824	0.4495	0.00024308	2.6361	0.0014255	540.7687421398463	18.676	0.11992	18.676	18.652	18.772	0	1257	70	0.86339295	0.042388618	0.86339295	350.23672	0	17.195007						211	6	5	NaN	NaN	NaN	0.12866	1	11958	11958		31.675	11.227	1	20427			23052	1979	13337	13712	18307	18307					-0.011843392873743142
RYLDASNEL	9	Unmodified	_RYLDASNEL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7696454599001	2	540.769645	1079.52474	1.684	0.00091065	-0.5014	-0.00027114	1.1826	0.00063951	541.2721025383287	18.722	0.16798	18.708	18.66	18.828	-0.014059	1257	58	0.86339295	0.03501284	0.8618735	350.23672	0	14.203003						199	8	4	NaN	NaN	NaN	0.03618	1	11652	11652		52.78	16.193	1	21806			23053	1979	13337	13712	18308	18308					-0.011843392873743142
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8191383414501	2	574.819138	1147.62372	2.1965	0.0012626	-1.5637	-0.00089886	0.63281	0.00036375	574.8176624416567	27.326	0.36206	27.326	27.229	27.591	0	1182	151	0.9093879	0.0919652	0.9093879	368.61868	0	37.277924						1029	16	6	NaN	NaN	NaN	0.00015011	1	14733	14733		119.86	55.9	1	1918500			23054	638	13338	13713	18309	18309					0.055816836775193224
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8191383414501	2	574.819138	1147.62372	1.9798	0.0011381	-1.2049	-0.00069258	0.77497	0.00044547	574.8181141833015	27.349	0.38613	27.339	27.194	27.58	-0.010126	1182	133	0.9093879	0.080911815	0.90786844	368.61868	0	32.797455						1070	17	6	NaN	NaN	NaN	0.00017726	1	14240	14240		118.2	54.246	1	1907400			23055	638	13338	13713	18310	18310					0.055816836775193224
RYLDELMKL	9	Unmodified	_RYLDELMKL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8233664396001	2	590.823366	1179.63218	1.687	0.0009967	-4.3677	-0.0025805	-2.6807	-0.0015838	590.8211004597866	25.178	0.16892	25.178	25.105	25.274	0	1152	73	0.92775106	0.04404801	0.92775106	375.94104	0	17.84903						237	8	3	NaN	NaN	NaN	0.13999	1	15822	15822		30.035	9.5221	1	38923			23056	3279	13339	13714	18311	18311					0.04954914322502191
RYLDELMKL	9	Oxidation (M)	_RYLDELM(Oxidation (M))KL_		RYLDELM(1)KL		RYLDELM(54)KL	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.54964132263336	3	399.549641	1195.62709	1.7725	0.0007082	-1.3909	-0.00055573	0.3816	0.00015247	399.54896205299286	21.633	0.096159	21.619	21.595	21.691	-0.013895	1509	43	0.70793515	0.026027799	0.7064157	430.23093	0	15.81778						75	5	2	NaN	NaN	NaN	0.033694	1	15693	15693		54.277	38.455	1	4906.2			23057	3279	13339	13715	18312	18312		364			0.037106104598706224
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;CON__P01030	ENSG00000244731|ENST00000428956|C4A;CON__P01030	CON__P01030	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8118446256	2	619.811845	1237.60914	1.5025	0.00093128	-1.7014	-0.0010546	-0.19892	-0.00012329	619.8115241793703	16.542	0.04797	16.542	16.542	16.59	0	1188	46	0.90571284	0.027561188	0.90571284	366.81192	0	11.162231						58	3	2	NaN	NaN	NaN	0.10945	1	17464	17464		34.454	11.12	1	4580.1		+	23058	6021;186	13340	13716	18313	18313					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;CON__P01030	ENSG00000244731|ENST00000428956|C4A;CON__P01030	CON__P01030	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8118446256	2	619.811845	1237.60914	1.5066	0.0009338	0.27063	0.00016774	1.7772	0.0011015	619.8128703620484	16.494	0.023949	16.494	16.47	16.494	0	1188	37	0.90571284	0.022052526	0.90571284	366.81192	0	8.931244						45	2	2	NaN	NaN	NaN	0.56377	1	17467	17467		6.9844	0	1	4383		+	23059	6021;186	13340	13716	18314	18314					-0.00016388470635320118
RYLDKTEQW	9	Unmodified						0	0	0		ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;nc|ENSG00000244731|P0C0L4-2|C4A;CON__P01030	ENSG00000244731|ENST00000428956|C4A;CON__P01030	CON__P01030	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	619.811845	1237.60914	1.3669	0.00084721	-2.3849	-0.0014782	-1.018	-0.00063099	619.8100977565119	16.634	0.11997	16.621	16.573	16.693	-0.013294	1191	37	0.90387505	0.02205491	0.9023556	366.06763		8.93219	0.039758	-0.00024716	-0.0016786	NaN	34.454	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9880.7		+	23060	6021;186	13340	13716							-0.00016388470635320118
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8060309662001	2	594.806031	1187.59751	1.6114	0.00095846	1.574	0.00093623	3.1854	0.0018947	594.806637106252	30.004	0.24141	30.004	29.956	30.198	0	1179	85	0.9112251	0.051400423	0.9112251	369.21573	0	20.826752						355	11	4	NaN	NaN	NaN	0.026443	1	16084	16084		63.765	36.469	1	49061			23061	1205	13341	13717	18315	18315					0.011214145060421288
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8060309662001	2	594.806031	1187.59751	0.68949	0.00041011	1.6339	0.00097186	2.3234	0.001382	594.807002687567	30.052	0.16893	30.045	29.973	30.142	-0.0064106	1179	115	0.9112251	0.06975776	0.90970564	369.21573	0	28.264862						362	8	3	NaN	NaN	NaN	0.19268	1	15475	15475		25.801	16.839	1	47179			23062	1205	13341	13717	18316	18316					0.011214145060421288
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.30058144755	2	581.300581	1160.58661	1.0775	0.00062635	-3.5658	-0.0020728	-2.4883	-0.0014464	581.2985350801448	31.525	0.19307	31.525	31.38	31.573	0	1191	58	0.90387505	0.034925938	0.90387505	366.33548	0	14.155304						196	9	3	NaN	NaN	NaN	0.11656	1	15170	15170		33.425	14.307	1	32070			23063	3004	13342	13718	18317	18317					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.30058144755	2	581.300581	1160.58661	2.1411	0.0012446	-1.2591	-0.0007319	0.88202	0.00051272	581.2995751044135	30.463	0.24132	30.463	30.366	30.608	0	1179	64	0.9112251	0.03858155	0.9112251	369.31442	0	15.636871						572	11	6	NaN	NaN	NaN	0.0073225	1	15174	15174		97.85	47.535	1	502540			23064	3004	13342	13718	18318	18318					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.30058144755	2	581.300581	1160.58661	0.80705	0.00046914	-3.6074	-0.002097	-2.8004	-0.0016278	581.8001736876504	31.548	0.16896	31.544	31.423	31.592	-0.0044174	1188	52	0.90571284	0.031246126	0.9041934	367.08035	0	12.66391						197	8	4	NaN	NaN	NaN	0.11656	1	14656	14656		33.425	18.25	1	26491			23065	3004	13342	13718	18319	18319					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.30058144755	2	581.300581	1160.58661	1.0097	0.00058694	-1.8306	-0.0010641	-0.82092	-0.0004772	581.8008806781451	31.355	0.14479	31.35	31.229	31.374	-0.0050716	1185	52	0.90755045	0.031242788	0.906031	367.8251	0	12.662537						171	7	3	NaN	NaN	NaN	0.27507	1	14658	14658		20.513	1.395	1	19739			23066	3004	13342	13718	18320	18320					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.30058144755	2	581.300581	1160.58661	1.7475	0.0010158	-0.089343	-5.1935E-05	1.6582	0.0009639	581.3005800239173	30.486	0.26544	30.48	30.384	30.649	-0.0057545	1176	79	0.9130621	0.047780514	0.91154265	370.05893	0	19.365173						704	12	6	NaN	NaN	NaN	2.6074E-07	1	14663	14663		131.88	65.221	1	488480			23067	3004	13342	13718	18321	18321					0.012740121317619924
RYLDLFTSF	9	Unmodified						0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.300581	1160.58661	0.94397	0.00054873	-3.7923	-0.0022045	-2.8483	-0.0016557	581.2982835392482	31.332	0.072392	31.332	31.284	31.356	0	1188	49	0.90571284	0.029406548	0.90571284	367.08035		11.918335	-0.0090171	-0.00089766	-0.00015909	NaN	20.513	126	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16121			23068	3004	13342	13718							0.012740121317619924
RYLDLILNDF	10	Unmodified	_RYLDLILNDF_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3455202674501	2	641.34552	1280.67649	1.2231	0.00078446	-2.1108	-0.0013537	-0.88763	-0.00056927	641.3442823258117	31.549	0.36207	31.549	31.428	31.79	0	1113	52	0.9515937	0.031158626	0.9515937	385.25058	0	12.614502						373	16	4	NaN	NaN	NaN	0.161	1	18434	18434		46.588	12.134	1	58264			23069	686	13343	13719	18322	18322					0.04737641740325671
RYLDLILNDF	10	Unmodified	_RYLDLILNDF_					0	0	0		nc|ENSG00000065427|Q15046-2|KARS1;ENSG00000065427|ENST00000302445|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	nc|ENSG00000065427|Q15046-2|KARS1	nc|ENSG00000065427|Q15046-2|KARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3455202674501	2	641.34552	1280.67649	1.142	0.00073244	-1.7863	-0.0011457	-0.6443	-0.00041322	641.3444345886757	31.669	0.24139	31.664	31.568	31.809	-0.0044155	1110	55	0.95342636	0.032993257	0.9519069	385.99252	0	13.357239						305	11	4	NaN	NaN	NaN	0.13207	1	17614	17614		49.394	25.001	1	49036			23070	686	13343	13719	18323	18323					0.04737641740325671
RYLDLLTTW	9	Unmodified	_RYLDLLTTW_					0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8216810304	2	590.821681	1179.62881	1.8662	0.0011026	-1.9682	-0.0011629	-0.10199	-6.026E-05	590.8209042819508	30.125	0.14479	30.125	30.101	30.246	0	1164	88	0.9204082	0.053227544	0.9204082	372.96555	0	21.568726						363	7	3	NaN	NaN	NaN	0.030696	1	15821	15821		58.2	23.746	1	74771			23071	5460	13344	13720	18324	18324					0.04617987540109425
RYLDLLTTW	9	Unmodified	_RYLDLLTTW_					0	0	0		nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	nc|ENSG00000186283|Q9H497-2|TOR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8216810304	2	590.821681	1179.62881	0.84233	0.00049766	-1.7447	-0.0010308	-0.90239	-0.00053315	590.8209135812435	30.197	0.19303	30.19	30.118	30.311	-0.0064106	1161	85	0.9222442	0.051389337	0.92072475	373.70953	0	20.823853						370	9	3	NaN	NaN	NaN	0.026469	1	15240	15240		63.731	37.616	1	78783			23072	5460	13344	13720	18325	18325					0.04617987540109425
RYLDSLKAIVF	11	Unmodified	_RYLDSLKAIVF_					0	0	0		nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	nc|ENSG00000166451|Q96H22-4|CENPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.88481260345	2	662.884813	1323.75507	1.3343	0.00088447	-1.1856	-0.00078594	0.14863	9.8524E-05	662.8836073919783	27.109	0.12068	27.109	27.084	27.205	0	1050	49	0.9900381	0.029257834	0.9900381	400.6755	0	11.840851						175	6	3	NaN	NaN	NaN	0.19358	1	19162	19162		30.925	14.067	1	28177			23073	4483	13345	13721	18326	18326					0.10614494045398715
RYLDVSILGKF	11	Unmodified	_RYLDVSILGKF_					0	0	0		nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.87698757135	2	655.876988	1309.73942	1.2784	0.00083844	-3.6219	-0.0023755	-2.3435	-0.0015371	655.8751437768433	26.625	0.14483	26.625	26.577	26.722	0	1071	40	0.977233	0.023788631	0.977233	395.5369	0	9.6285095						153	7	3	NaN	NaN	NaN	0.073935	1	18941	18941		43.765	27.943	1	21317			23074	4430	13346	13722	18327	18327					0.09694207528355037
RYLDVSILGKF	11	Unmodified	_RYLDVSILGKF_					0	0	0		nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.5870838697666	3	437.587084	1309.73942	1.218	0.00053299	-2.6605	-0.0011642	-1.4425	-0.00063121	437.58617071355627	26.625	0.072414	26.625	26.601	26.674	0	1404	34	0.77288127	0.02037406	0.77288127	469.23398	0	12.369537						62	4	2	NaN	NaN	NaN	0.26275	1	18943	18943		16.768	13.463	1	5809.5			23075	4430	13346	13722	18328	18328					0.09694207528355037
RYLDVSILGKF	11	Unmodified	_RYLDVSILGKF_					0	0	0		nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.87698757135	2	655.876988	1309.73942	0.82326	0.00053996	-1.9429	-0.0012743	-1.1197	-0.00073436	656.3771712553117	26.842	0.28961	26.832	26.711	27.001	-0.010645	1068	34	0.97906286	0.020128906	0.9775434	396.27756	0	8.147186						199	13	3	NaN	NaN	NaN	0.26193	1	18106	18106		26.989	13.986	1	16059			23076	4430	13346	13722	18329	18329					0.09694207528355037
RYLDWIKKI	9	Unmodified	_RYLDWIKKI_					0	0	0		nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8	nc|ENSG00000129455|O60259-3|KLK8	nc|ENSG00000129455|O60259-3|KLK8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.2484025382	3	412.248403	1233.72338	1.9322	0.00079653	-2.3401	-0.00096472	-0.40799	-0.00016819	412.24741165261366	22.911	0.24088	22.911	22.838	23.079	0	1443	58	0.7487872	0.035237312	0.7487872	454.89774	0	21.407104						384	11	4	NaN	NaN	NaN	0.07568	1	17372	17372		39.34	16.163	1	82213			23077	2603	13347	13723	18330	18330					0.11586546082116911
RYLDWIKKI	9	Unmodified	_RYLDWIKKI_					0	0	0		nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8	nc|ENSG00000129455|O60259-3|KLK8	nc|ENSG00000129455|O60259-3|KLK8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.2484025382	3	412.248403	1233.72338	1.2082	0.00049807	-4.7825	-0.0019716	-3.5743	-0.0014735	412.5803036324531	24.043	0.24128	24.031	24.031	24.272	-0.012749	1437	52	0.7524962	0.031517863	0.75097674	457.151	0	19.147491						181	11	2	NaN	NaN	NaN	0.13384	1	16646	16646		30.925	13.343	1	19937			23078	2603	13347	13723	18331	18331					0.11586546082116911
RYLEAALRL	9	Unmodified	_RYLEAALRL_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.8298404135	2	552.82984	1103.64513	1.2333	0.0006818	-3.9408	-0.0021786	-2.7075	-0.0014968	552.826784797904	21.32	0.28889	21.32	21.151	21.44	0	1173	100	0.91489893	0.06068057	0.91489893	371.028	0	24.608368						381	13	3	NaN	NaN	NaN	0.090258	1	13010	13010		37.231	7.6325	1	49004			23079	3339	13348	13724	18332	18332					0.09745113496887825
RYLEAALRL	9	Unmodified	_RYLEAALRL_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.8298404135	2	552.82984	1103.64513	1.4519	0.00080264	-2.7123	-0.0014995	-1.2604	-0.00069681	552.8280680157292	21.609	0.24088	21.595	21.451	21.691	-0.013897	1176	85	0.9130621	0.051472604	0.91154265	370.28308	0	20.874207						331	11	3	NaN	NaN	NaN	0.045904	1	12660	12660		48.65	28.202	1	37210			23080	3339	13348	13724	18333	18333					0.09745113496887825
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2553166641501	2	521.255317	1040.49608	2.0227	0.0010543	-1.8425	-0.00096042	0.18021	9.3934E-05	521.2545358303609	19.012	0.28792	19.012	18.892	19.18	0	1275	79	0.85233563	0.04793048	0.85233563	345.91467	0	19.45227						473	13	4	NaN	NaN	NaN	0.097143	1	10227	10227		36.235	15.679	1	125350			23081	6143	13349	13725	18334	18334					-0.022547801881728446
RYLEGTSCI	9	Unmodified	_RYLEGTSCI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2553166641501	2	521.255317	1040.49608	1.7623	0.00091862	-1.6878	-0.00087979	0.074493	3.883E-05	521.2549224292349	19.082	0.33635	19.068	18.9	19.236	-0.014059	1275	64	0.85233563	0.038719356	0.8508162	345.91467	0	15.713989						576	15	5	NaN	NaN	NaN	0.25548	1	10008	10008		21.771	3.9721	1	124450			23082	6143	13349	13725	18335	18335					-0.022547801881728446
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.23627403610004	3	388.236274	1161.68699	1.5028	0.00058343	-1.394	-0.00054119	0.10879	4.2235E-05	388.2358010264427	14.213	0.16817	14.213	14.165	14.333	0	1470	43	0.7320868	0.02598828	0.7320868	445.05655	0	15.799011						209	8	4	NaN	NaN	NaN	0.026469	1	15216	15216		63.995	40.818	1	25846			23083	3095	13350	13726	18336	18336					0.11261669185432766
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.5461197605333	3	393.54612	1177.61653	1.9844	0.00078093	-1.8503	-0.00072818	0.13403	5.2749E-05	393.5454042000154	18.077	0.23985	18.077	18.029	18.268	0	1404	58	0.77288127	0.035199106	0.77288127	469.7822	0	21.395172						278	11	4	NaN	NaN	NaN	0.054111	1	15752	15752		40.006	18.155	1	78987			23084	4630	13351	13727	18337	18337					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.8155414075001	2	589.815541	1177.61653	2.5382	0.0014971	-1.7477	-0.0010308	0.79048	0.00046624	589.81485155971	18.101	0.31174	18.101	17.981	18.292	0	1194	76	0.902037	0.045945227	0.902037	365.52844	0	18.618195						759	14	6	NaN	NaN	NaN	8.9076E-05	1	15753	15753		123.58	78.938	1	394290			23085	4630	13351	13727	18338	18338					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.5461197605333	3	393.54612	1177.61653	2.134	0.00083982	-2.132	-0.00083903	0.0020149	7.9294E-07	393.54547720568524	18.266	0.31208	18.252	18.156	18.468	-0.01395	1404	46	0.77288127	0.027779698	0.7713618	469.78223	0	16.885437						336	14	3	NaN	NaN	NaN	0.015029	1	15179	15179		61.575	34.528	1	87233			23086	4630	13351	13727	18339	18339					0.03482627805442462
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.8155414075001	2	589.815541	1177.61653	2.391	0.0014103	-2.3391	-0.0013796	0.051955	3.0644E-05	589.8145048558249	18.29	0.38405	18.276	18.132	18.516	-0.01395	1194	82	0.902037	0.049631655	0.9005176	365.52844	0	20.112						1035	17	6	NaN	NaN	NaN	0.013093	1	15180	15180		83.529	42.572	1	446770			23087	4630	13351	13727	18340	18340					0.03482627805442462
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(54)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.8777579679	3	398.877758	1193.61144	1.2633	0.00050392	-1.8108	-0.00072231	-0.54751	-0.00021839	398.87709960801635	15.534	0.12006	15.534	15.51	15.63	0	1551	52	0.6818875	0.03164816	0.6818875	414.4091	0	19.233795						113	6	3	NaN	NaN	NaN	0.033694	1	16262	16262		54.277	29.784	1	10054			23088	4630	13351	13728	18341	18341		496			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(120)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.81299871855	2	597.812999	1193.61144	1.8274	0.0010924	-1.4816	-0.00088569	0.3458	0.00020672	597.8121764841242	15.534	0.24014	15.534	15.486	15.726	0	1194	73	0.902037	0.04410982	0.902037	365.47174	0	17.871643						648	11	6	NaN	NaN	NaN	0.00012629	1	16264	16264		121.31	81.851	1	420380			23089	4630	13351	13728	18342	18342		496			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(56)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.8777579679	3	398.877758	1193.61144	2.1617	0.00086224	-2.4932	-0.00099446	-0.3315	-0.00013223	398.8770495474015	15.7	0.35943	15.687	15.567	15.927	-0.012612	1389	67	0.7821392	0.040737033	0.78061974	475.33582	0	24.757446						606	16	5	NaN	NaN	NaN	0.032409	1	15637	15637		55.958	35.445	1	248500			23090	4630	13351	13728	18343	18343		496			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(58)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.81299871855	2	597.812999	1193.61144	2.0672	0.0012358	-1.7912	-0.0010708	0.27598	0.00016498	597.8124384901679	15.7	0.38335	15.687	15.567	15.951	-0.012612	1194	76	0.902037	0.04594034	0.9005176	365.47174	0	18.613312						831	17	5	NaN	NaN	NaN	0.030696	1	15638	15638		58.2	33.638	1	455470			23091	4630	13351	13728	18344	18344		496			0.022383239428108936
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.8085736551501	2	532.808574	1063.60259	1.9551	0.0010417	-2.6164	-0.0013941	-0.6614	-0.0003524	532.8069089609276	15.942	0.19185	15.942	15.894	16.086	0	1281	43	0.84864825	0.025811553	0.84864825	344.32047	0	10.472473						213	9	3	NaN	NaN	NaN	0.045904	1	11299	11299		48.65	22.849	1	32483			23092	5981	13352	13729	18345	18345					0.07333718368658992
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.8085736551501	2	532.808574	1063.60259	1.5345	0.00081759	-1.3911	-0.00074121	0.14336	7.6382E-05	532.8082259235999	16.179	0.26368	16.166	16.022	16.286	-0.012993	1281	43	0.84864825	0.025814295	0.8471288	344.32047	0	10.473572						202	12	3	NaN	NaN	NaN	0.12104	1	11039	11039		32.778	13.614	1	26450			23093	5981	13352	13729	18346	18346					0.07333718368658992
RYLELISSI	9	Unmodified	_RYLELISSI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3162315117502	2	547.316232	1092.61791	1.1651	0.00063766	-4.7101	-0.0025779	-3.5451	-0.0019403	547.3136508547224	26.746	0.16894	26.735	26.687	26.856	-0.010645	1200	124	0.89836043	0.075448096	0.896841	364.36633	0	30.601013						330	8	4	NaN	NaN	NaN	0.026469	1	12200	12200		63.731	26.5	1	50458			23094	4271	13353	13730	18347	18347					0.07530585165864068
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.2190601561	3	408.21906	1221.63535	1.2349	0.00050411	-0.9257	-0.00037789	0.30921	0.00012622	408.2184274306262	14.525	0.216	14.525	14.501	14.717	0	1410	133	0.76917666	0.08162445	0.76917666	467.33566	0	49.593292						400	10	2	NaN	NaN	NaN	0.0066718	1	17022	17022		75.53	48.25	1	84918			23095	5943;5902;5890	13354	13731	18348	18348					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8249520008501	2	611.824952	1221.63535	1.1403	0.00069763	-0.81717	-0.00049997	0.32308	0.00019767	611.8243904260693	14.525	0.38409	14.525	14.501	14.885	0	1173	67	0.91489893	0.040407836	0.91489893	370.5857	0	16.367432						552	17	5	NaN	NaN	NaN	0.00021473	1	17023	17023		118.29	43.198	1	189420			23096	5943;5902;5890	13354	13731	18349	18349					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.8249520008501	2	611.824952	1221.63535	0.97281	0.00059519	-0.64126	-0.00039234	0.33156	0.00020285	611.8246567603378	14.668	0.3118	14.656	14.56	14.872	-0.011738	1173	67	0.91489893	0.040412188	0.9133795	370.5857	0	16.369202						566	14	5	NaN	NaN	NaN	0.0096693	1	16335	16335		91.227	39.032	1	174570			23097	5943;5902;5890	13354	13731	18350	18350					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000204525|P10321-2|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204525|ENST00000376228|HLA-C	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.2190601561	3	408.21906	1221.63535	1.1295	0.0004611	-0.72227	-0.00029485	0.40727	0.00016625	408.21889692004817	14.668	0.23982	14.656	14.584	14.824	-0.011738	1410	187	0.76917666	0.1151163	0.7676573	467.33566	0	69.94226						740	11	4	NaN	NaN	NaN	0.0036708	1	16336	16336		80.4	56.007	1	92453			23098	5943;5902;5890	13354	13731	18351	18351					0.03339880700855247
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3302045542501	2	600.330205	1198.64586	2.398	0.0014396	-1.198	-0.00071919	1.2	0.00072039	600.3295848614163	18.46	0.21584	18.46	18.412	18.628	0	1182	70	0.9093879	0.042251408	0.9093879	368.43234	0	17.117859						480	10	5	NaN	NaN	NaN	1.0637E-25	1	16427	16427		167.71	116.88	1	320840			23099	4630	13355	13732	18352	18352					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5558951917001	3	400.555895	1198.64586	2.1059	0.00084352	-0.3956	-0.00015846	1.7103	0.00068506	400.55490179612144	18.46	0.21589	18.46	18.364	18.58	0	1464	118	0.73579943	0.07245499	0.73579943	447.15195	0	44.031525						621	10	6	NaN	NaN	NaN	0.0042638	1	16429	16429		83.13	46.508	1	125700			23100	4630	13355	13732	18353	18353					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.3302045542501	2	600.330205	1198.64586	1.8965	0.0011385	-1.4239	-0.00085483	0.47259	0.00028371	600.3293506386765	18.674	0.40811	18.66	18.54	18.948	-0.014059	1185	70	0.90755045	0.042251408	0.906031	367.68793	0	17.117859						739	18	5	NaN	NaN	NaN	0.0085768	1	15779	15779		95.291	50.126	1	344500			23101	4630	13355	13732	18354	18354					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.5558951917001	3	400.555895	1198.64586	1.8841	0.00075469	1.1527	0.00046171	3.0368	0.0012164	400.5557389216014	18.65	0.28793	18.636	18.516	18.804	-0.014061	1464	109	0.73579943	0.06688511	0.73428	447.15195	0	40.64673						708	13	4	NaN	NaN	NaN	0.021751	1	15780	15780		53.652	29.251	1	125540			23102	4630	13355	13732	18355	18355					0.05447908145947622
RYLEQLHQLY	10	Unmodified	_RYLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.9103380378001	3	454.910338	1361.70918	1.0682	0.00048596	6.7871	0.0030875	7.8553	0.0035735	454.91320159862283	21.464	0.21696	21.464	21.416	21.633	0	1359	43	0.8006399	0.025887072	0.8006399	485.89343	0	15.710358						229	10	4	NaN	NaN	NaN	0.24484	1	19705	19705		20.936	10.075	1	39701			23103	4630	13356	13733	18356	18356					0.04279848863211555
RYLEQLHQLY	10	Unmodified	_RYLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.9103380378001	3	454.910338	1361.70918	1.2272	0.00055826	7.338	0.0033382	8.5652	0.0038964	454.9136031591697	21.657	0.24079	21.643	21.523	21.764	-0.013897	1359	43	0.8006399	0.025884211	0.7991205	485.89343	0	15.708649						206	11	2	NaN	NaN	NaN	0.16973	1	18795	18795		25.694	6.7701	1	36383			23104	4630	13356	13733	18357	18357					0.04279848863211555
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3293388870001	2	575.329339	1148.64412	1.1047	0.00063556	-7.0176	-0.0040374	-5.9129	-0.0034019	575.3257957741729	28.218	0.36198	28.209	28.04	28.402	-0.0089779	1182	67	0.9093879	0.040434003	0.90786844	368.61484	0	16.38971						439	15	4	NaN	NaN	NaN	0.041983	1	14268	14268		50.315	2.8336	1	98894			23105	6099	13357	13734	18358	18358					0.07574854337326542
RYLEVLINL	9	Unmodified	_RYLEVLINL_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.83987378355	2	566.839874	1131.66519	1.6223	0.0009196	-4.1314	-0.0023418	-2.5091	-0.0014222	567.3384663401802	29.136	0.12066	29.136	29.112	29.232	0	1188	61	0.90571284	0.036746264	0.90571284	367.1905	0	14.897522						161	6	3	NaN	NaN	NaN	0.33202	1	14158	14158		16.858	2.8167	1	25921			23106	5375	13358	13735	18359	18359					0.10462864436840391
RYLEVLINL	9	Unmodified						0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.839874	1131.66519	1.0155	0.00057565	-7.0737	-0.0040096	-6.0581	-0.003434	566.8357419057495	29.207	0.26548	29.2	29.127	29.393	-0.0077209	1185	61	0.90755045	0.03674233	0.906031	367.93552		14.895935	0.031957	-0.0015368	0.00015909	NaN	16.858	266	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44252			23107	5375	13358	13735							0.10462864436840391
RYLEVMRKL	9	Unmodified	_RYLEVMRKL_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.2375090925667	3	403.237509	1206.6907	1.5375	0.00061997	-3.5502	-0.0014316	-2.0127	-0.0008116	403.23608178851254	17.669	0.19177	17.669	17.597	17.789	0	1449	43	0.74507743	0.025968552	0.74507743	452.75598	0	15.780121						197	9	3	NaN	NaN	NaN	0.05973	1	16655	16655		42.779	22.875	1	20550			23108	2213	13359	13736	18360	18360					0.09562015687629355
RYLEVMRKL	9	Oxidation (M)	_RYLEVM(Oxidation (M))RKL_		RYLEVM(1)RKL		RYLEVM(51)RKL	0	0	1		nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.5691472999334	3	408.569147	1222.68561	1.1682	0.00047727	-1.3168	-0.00053801	-0.14866	-6.0738E-05	408.568149575087	14.453	0.14392	14.453	14.357	14.501	0	1440	34	0.7506418	0.020398319	0.7506418	456.0699	0	12.393463						107	7	2	NaN	NaN	NaN	0.040769	1	17051	17051		50.831	22.335	1	17832			23109	2213	13359	13737	18361	18361		257			0.08317711825020524
RYLGISPV	8	Unmodified	_RYLGISPV_					0	0	0			REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	REV__ENST00000303521.10_1_15:76673691-77134263:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.7661775242	2	452.766178	903.517802	1.3446	0.00060879	0.062098	2.8116E-05	1.4067	0.00063691	452.76622335430704	25.322	0.19302	25.322	25.274	25.467	0	1233	55	0.87812483	0.033132493	0.87812483	357.0857	0	13.473175						214	9	3	NaN	NaN	NaN	0.81251	1	6152	6152		7.5404	0	1	40045	+		23110	11667	13360	13738	18362	18362					0.0621839262270214
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.8345914404	2	545.834591	1089.65463	1.2947	0.00070671	-1.9524	-0.0010657	-0.65765	-0.00035897	545.8334942736319	20.838	0.16869	20.838	20.766	20.935	0	1203	43	0.8965218	0.025741875	0.8965218	363.6329	0	10.4410095						226	8	3	NaN	NaN	NaN	0.024221	1	12395	12395		66.656	24.339	1	56231			23111	2752	13361	13739	18363	18363					0.11338881782398857
RYLHKPYLI	9	Unmodified	_RYLHKPYLI_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.57299762136665	3	401.572998	1201.69716	1.5915	0.00063909	-3.0084	-0.0012081	-1.4169	-0.00056899	401.5725855743019	17.525	0.071941	17.525	17.453	17.525	0	1416	25	0.76547134	0.014823079	0.76547134	465.17044	0	9.007843						49	4	2	NaN	NaN	NaN	0.2345	1	16530	16530		23.118	15.53	1	4126.5			23112	2973	13362	13740	18364	18364					0.10438276910645072
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.2328639243333	3	405.232864	1212.67676	2.1246	0.00086097	-2.7986	-0.0011341	-0.67394	-0.0002731	405.56525454334013	23.296	0.16889	23.283	23.21	23.379	-0.013294	1440	28	0.7506418	0.016689539	0.7491224	456.11185	0	10.141052						68	8	2	NaN	NaN	NaN	0.31737	1	16133	16133		11.739	5.3089	1	4242.1			23113	848	13363	13741	18365	18365					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3456576532	2	607.345658	1212.67676	1.3244	0.00080435	0.21017	0.00012765	1.5345	0.000932	607.345498564998	23.32	0.21714	23.307	23.162	23.379	-0.013296	1134	58	0.9387595	0.034861922	0.93724006	380.28198	0	14.122223						200	10	3	NaN	NaN	NaN	0.31737	1	16134	16134		17.799	10.259	1	17175			23114	848	13363	13741	18366	18366					0.07893106250821802
RYLLKFEQI	9	Unmodified	_RYLLKFEQI_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.90452437839997	3	403.904524	1208.69174	1.4278	0.00057671	-3.0906	-0.0012483	-1.6628	-0.0006716	403.9031350786754	22.26	0.07234	22.26	22.212	22.284	0	1392	31	0.780288	0.018512845	0.780288	474.14328	0	11.249329						64	4	3	NaN	NaN	NaN	0.21451	1	16706	16706		24.4	12.094	1	3614.8			23115	8101	13364	13742	18367	18367					0.09574553328161528
RYLMDPDTFTF	11	Unmodified	_RYLMDPDTFTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3264702345499	2	703.32647	1404.63839	1.1328	0.00079675	-4.9406	-0.0034748	-3.8078	-0.0026781	703.8244713375946	28.846	0.2172	28.846	28.701	28.918	0	1068	79	0.97906286	0.047605574	0.97906286	395.99796	0	19.254852						441	10	3	NaN	NaN	NaN	0.20668	1	20101	20101		29.706	7.8558	1	47503			23116	5164	13365	13743	18368	18368					-0.04774612236678877
RYLMDPDTFTF	11	Unmodified	_RYLMDPDTFTF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3264702345499	2	703.32647	1404.63839	0.77881	0.00054776	-4.0351	-0.002838	-3.2563	-0.0022902	703.3236762449163	28.845	0.21719	28.837	28.74	28.958	-0.0083504	1107	85	0.9552588	0.05126202	0.9537394	386.37003	0	20.733765						376	10	4	NaN	NaN	NaN	0.14916	1	19152	19152		35.056	24.091	1	36308			23117	5164	13365	13743	18369	18369					-0.04774612236678877
RYLMDPDTFTF	11	Oxidation (M)	_RYLM(Oxidation (M))DPDTFTF_		RYLM(1)DPDTFTF		RYLM(72)DPDTFTF	0	0	1		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3239275455999	2	711.323928	1420.6333	1.6554	0.0011775	-1.1419	-0.00081227	0.51347	0.00036525	711.3242059790472	25.515	0.21715	25.503	25.407	25.624	-0.0116	1098	79	0.960755	0.047590137	0.9592356	388.55038	0	19.246521						353	10	4	NaN	NaN	NaN	0.0071196	1	19260	19260		72.093	31.939	1	42674			23118	5164	13365	13744	18370	18370		539			-0.06018916099310445
RYLNDLYIL	9	Unmodified	_RYLNDLYIL_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8295060625001	2	591.829506	1181.64446	1.4793	0.00087549	-2.3365	-0.0013828	-0.85724	-0.00050734	591.829233557591	27.833	0.12065	27.833	27.784	27.905	0	1149	46	0.92958635	0.027528465	0.92958635	376.67728	0	11.154816						180	6	4	NaN	NaN	NaN	0.25548	1	15891	15891		21.771	10.601	1	29386			23119	7983	13366	13745	18371	18371					0.06090274057191891
RYLNDLYIL	9	Unmodified	_RYLNDLYIL_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.8295060625001	2	591.829506	1181.64446	0.71381	0.00042245	-2.5731	-0.0015228	-1.8593	-0.0011004	591.8286829661504	27.88	0.12071	27.87	27.822	27.943	-0.009552	1146	64	0.93142134	0.0385316	0.9299019	377.42084	0	15.613373						195	6	4	NaN	NaN	NaN	0.16939	1	15295	15295		27.296	13.255	1	26096			23120	7983	13366	13745	18372	18372					0.06090274057191891
RYLNEFEEL	9	Unmodified	_RYLNEFEEL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7984028993501	2	606.798403	1211.58225	1.9071	0.0011572	-0.65958	-0.00040023	1.2475	0.00075696	606.7978576188116	23.706	0.24092	23.706	23.682	23.923	0	1164	67	0.9204082	0.040394723	0.9204082	372.85184	0	16.363678						617	11	5	NaN	NaN	NaN	6.5392E-05	1	16762	16762		125.02	61.289	1	540530			23121	984	13367	13746	18373	18373					-0.015074970817977373
RYLNEFEEL	9	Unmodified	_RYLNEFEEL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7984028993501	2	606.798403	1211.58225	1.861	0.0011292	-1.3519	-0.00082031	0.50909	0.00030891	606.7976405934645	23.778	0.24099	23.765	23.693	23.934	-0.013048	1161	88	0.9222442	0.053227544	0.92072475	373.59558	0	21.562164						646	11	5	NaN	NaN	NaN	0.11656	1	16092	16092		33.425	7.3104	1	552000			23122	984	13367	13746	18374	18374					-0.015074970817977373
RYLNEFEEL	9	Unmodified						0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	606.798403	1211.58225	1.0161	0.0006166	0.39383	0.00023897	1.41	0.00085557	606.8006085287276	24.067	0.12062	24.055	23.982	24.103	-0.012749	1167	82	0.91857195	0.049594104	0.9170525	372.10797		20.090271	0.17429	0.0012515	-0.0016778	NaN	125.02	203	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21177			23123	984	13367	13746							-0.015074970817977373
RYLNELKWSF	10	Unmodified	_RYLNELKWSF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3589619937	2	678.358962	1354.70337	1.3303	0.00090243	-2.2856	-0.0015505	-0.9553	-0.00064804	678.3574794752781	24.743	0.16891	24.743	24.695	24.864	0	1086	55	0.9680805	0.032954156	0.9680805	391.69666	0	13.333618						241	8	4	NaN	NaN	NaN	0.075094	1	19604	19604		49.394	23.593	1	26828			23124	4237	13368	13747	18375	18375					0.04020750351492097
RYLNKAFHI	9	Unmodified	_RYLNKAFHI_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.88909721486664	3	387.889097	1160.64546	1.614	0.00062605	-3.3668	-0.0013059	-1.7528	-0.00067989	388.2222906428158	17.045	0.12005	17.045	16.997	17.117	0	1407	31	0.77102906	0.018522859	0.77102906	468.7356	0	11.260681						84	6	3	NaN	NaN	NaN	0.12945	1	15184	15184		33.425	14.262	1	6224.9			23125	3744	13369	13748	18376	18376					0.0715653321674381
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3322159269501	2	570.332216	1138.64988	1.9249	0.0010978	-1.7352	-0.00098962	0.18974	0.00010822	570.3312320250091	19.804	0.096087	19.804	19.78	19.876	0	1182	43	0.9093879	0.025725186	0.9093879	368.6532	0	10.428619						138	5	3	NaN	NaN	NaN	0.13602	1	14413	14413		30.61	11.492	1	17273			23126	2781	13370	13749	18377	18377					0.08609997639655376
RYLNKSFVL	9	Unmodified						0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.332216	1138.64988	1.256	0.00071634	-3.8829	-0.0022146	-2.6269	-0.0014982	570.3298220739192	20.213	0.26473	20.198	20.03	20.295	-0.014141	1185	49	0.90755045	0.029409707	0.906031	367.90833		11.922302	0.19711	-0.0014813	-0.0016784	NaN	30.61	175	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17365			23127	2781	13370	13749							0.08609997639655376
RYLNSQQQYF	10	Unmodified	_RYLNSQQQYF_					0	0	0		NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.8280260060501	2	673.828026	1345.6415	1.4041	0.00094612	-0.50567	-0.00034073	0.89843	0.00060539	673.827515617434	19.276	0.24003	19.276	19.228	19.468	0	1083	40	0.9699114	0.023801506	0.9699114	392.4641	0	9.631012						232	11	4	NaN	NaN	NaN	0.011513	1	19488	19488		69.32	53.857	1	29227			23128	4722	13371	13750	18378	18378					-0.01749601067626827
RYLNSQQQYF	10	Unmodified	_RYLNSQQQYF_					0	0	0		NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.8280260060501	2	673.828026	1345.6415	1.1497	0.00077471	-0.0044521	-2.9999E-06	1.1453	0.00077171	673.8281730228633	19.322	0.16819	19.308	19.26	19.428	-0.014141	1083	43	0.9699114	0.02563101	0.96839195	392.4641	0	10.371307						208	8	3	NaN	NaN	NaN	0.10101	1	18621	18621		45.827	31.402	1	28707			23129	4722	13371	13750	18379	18379					-0.01749601067626827
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.3265992328	2	552.326599	1102.63865	1.9773	0.0010921	-0.23645	-0.0001306	1.7408	0.0009615	552.3268924783148	27.881	0.36195	27.881	27.808	28.17	0	1191	97	0.90387505	0.05882591	0.90387505	366.5615	0	23.856506						1106	16	6	NaN	NaN	NaN	0.021751	1	12963	12963		69.782	25.144	1	851460			23130	1109	13372	13751	18380	18380					0.09143175545523263
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.3265992328	2	552.326599	1102.63865	1.8241	0.0010075	0.047511	2.6241E-05	1.8716	0.0010337	552.3267162172647	27.928	0.33785	27.919	27.846	28.184	-0.009552	1191	94	0.90387505	0.056984484	0.9023556	366.5615	0	23.109741						1128	15	5	NaN	NaN	NaN	0.021751	1	12620	12620		69.782	25.144	1	877400			23131	1109	13372	13751	18381	18381					0.09143175545523263
RYLPEDFMESL	11	Unmodified	_RYLPEDFMESL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.3317525777	2	700.331753	1398.64895	0.73348	0.00051368	-2.1769	-0.0015245	-1.4434	-0.0010108	700.8318686602075	28.99	0.24132	28.982	28.91	29.151	-0.0077229	1080	70	0.9717421	0.042096734	0.97022265	393.05334	0	17.027435						312	11	3	NaN	NaN	NaN	0.048526	1	19113	19113		50.211	35.357	1	35159			23132	2278	13373	13752	18382	18382					-0.03442629582241352
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	461.5908283325333	3	461.590828	1381.75066	1.3169	0.00060787	-3.0595	-0.0014123	-1.7426	-0.00080438	461.58932451454064	23.513	0.24105	23.513	23.393	23.634	0	1377	58	0.7895419	0.03515333	0.7895419	479.08853	0	21.330841						309	11	4	NaN	NaN	NaN	0.073935	1	19912	19912		43.765	34.761	1	44924			23133	7981	13374	13753	18383	18383					0.07505029622507209
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.8826042655	2	691.882604	1381.75066	1.9388	0.0013414	-2.4681	-0.0017077	-0.52936	-0.00036625	691.8821422144862	23.513	0.16869	23.513	23.465	23.634	0	1035	82	0.99917877	0.049332798	0.99917877	404.1994	0	19.956696						375	8	4	NaN	NaN	NaN	0.082663	1	19913	19913		61.199	42.035	1	49161			23134	7981	13374	13753	18384	18384					0.07505029622507209
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.5908283325333	3	461.590828	1381.75066	0.96885	0.00044721	-2.2295	-0.0010291	-1.2607	-0.00058192	461.92414980061835	23.971	0.24116	23.958	23.765	24.006	-0.01305	1377	37	0.7895419	0.022203326	0.78802246	479.08853	0	13.472839						198	11	3	NaN	NaN	NaN	0.48738	1	18980	18980		18.924	11.794	1	19854			23135	7981	13374	13753	18385	18385					0.07505029622507209
RYLPSTPLRW	10	Unmodified	_RYLPSTPLRW_					0	0	0		ENSG00000121900|ENST00000373463|TMEM54	ENSG00000121900|ENST00000373463|TMEM54	ENSG00000121900|ENST00000373463|TMEM54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.86167185815	2	644.861672	1287.70879	2.0017	0.0012908	-2.8782	-0.001856	-0.87645	-0.00056519	644.8604042725551	22.236	0.12061	22.236	22.212	22.332	0	1131	49	0.94059354	0.029340029	0.94059354	380.77502	0	11.877533						167	6	3	NaN	NaN	NaN	0.21887	1	18565	18565		33.907	18.732	1	21915			23136	2307	13375	13754	18386	18386					0.07644473933964946
RYLPSTPLRW	10	Unmodified	_RYLPSTPLRW_					0	0	0		ENSG00000121900|ENST00000373463|TMEM54	ENSG00000121900|ENST00000373463|TMEM54	ENSG00000121900|ENST00000373463|TMEM54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.86167185815	2	644.861672	1287.70879	1.7839	0.0011504	-1.008	-0.00065003	0.77585	0.00050032	644.861355921721	22.476	0.21688	22.462	22.39	22.607	-0.013733	1131	40	0.94059354	0.023842633	0.93907416	380.775	0	9.652069						165	10	3	NaN	NaN	NaN	0.60059	1	17737	17737		14.854	2.8053	1	13787			23137	2307	13375	13754	18387	18387					0.07644473933964946
RYLPTDTLLNH	11	Unmodified	_RYLPTDTLLNH_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.24197624516665	3	448.241976	1341.7041	0.8599	0.00038544	-0.11996	-5.3773E-05	0.73994	0.00033167	448.2418522148987	20.477	0.12015	20.477	20.429	20.549	0	1476	40	0.72837335	0.02413851	0.72837335	442.10236	0	14.651398						151	6	3	NaN	NaN	NaN	0.6875	1	19441	19441		5.9336	0.64891	1	23537			23138	1299	13376	13755	18388	18388					0.04691545000559927
RYLPTDTLLNH	11	Unmodified	_RYLPTDTLLNH_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.85932613445	2	671.859326	1341.7041	1.3182	0.00088563	0.13225	8.8853E-05	1.4504	0.00097448	671.8596300948416	20.694	0.096474	20.68	20.632	20.728	-0.014088	1077	25	0.9735726	0.014643133	0.9720532	393.95734	0	5.925354						55	5	2	NaN	NaN	NaN	0.74325	1	18574	18574		4.6175	1.3565	1	4973.4			23139	1299	13376	13755	18389	18389					0.04691545000559927
RYLPTEQEVRF	11	Unmodified	_RYLPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.9210141744332	3	479.921014	1436.74121	1.7509	0.00084028	-2.9033	-0.0013934	-1.1525	-0.00055309	479.9206396237686	19.997	0.048092	19.997	19.997	20.045	0	1380	46	0.7876915	0.027758658	0.7876915	477.7847	0	16.837402						58	3	2	NaN	NaN	NaN	0.021226	1	20315	20315		42.68	26.407	1	6070.4			23140	1233	13377	13756	18390	18390					0.04031216546286487
RYLPTEQEVRF	11	Unmodified	_RYLPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3778830283499	2	719.377883	1436.74121	1.4223	0.0010232	0.9018	0.00064873	2.3241	0.0016719	719.3792811593282	19.997	0.12017	19.997	19.972	20.093	0	1056	37	0.9863805	0.0219481	0.9863805	398.87076	0	8.875366						107	6	3	NaN	NaN	NaN	0.60584	1	20316	20316		13.638	6.0501	1	12585			23141	1233	13377	13756	18391	18391					0.04031216546286487
RYLPTEQEVRF	11	Unmodified	_RYLPTEQEVRF_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3778830283499	2	719.377883	1436.74121	1.3656	0.00098241	0.14561	0.00010475	1.5112	0.0010872	719.3783003546075	20.116	0.14444	20.102	20.054	20.198	-0.014141	1053	37	0.9882094	0.0219481	0.98669	399.61032	0	8.875366						125	7	2	NaN	NaN	NaN	0.61402	1	19347	19347		13.101	6.1168	1	15306			23142	1233	13377	13756	18392	18392					0.04031216546286487
RYLPTEQEVRF	11	Unmodified						0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	479.921014	1436.74121	2.3365	0.0011213	-2.277	-0.0010928	0.059454	2.8533E-05	480.25468391097075	20.116	0.072212	20.102	20.102	20.174	-0.014141	1377	37	0.7895419	0.022203326	0.78802246	478.90707		13.467743	0.052779	0.00040044	0.00016547	NaN	42.68	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3666.2			23143	1233	13377	13756							0.04031216546286487
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.80857365515	2	592.808574	1183.60259	1.9038	0.0011286	-0.45475	-0.00026958	1.449	0.00085899	592.808219774101	26.746	0.45899	26.746	26.601	27.06	0	1194	100	0.902037	0.060634673	0.902037	365.50705	0	24.569275						1143	20	5	NaN	NaN	NaN	0.00028873	1	15969	15969		97.85	68.954	1	1047000			23144	7920	13378	13757	18393	18393					0.01813718368634909
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.80857365515	2	592.808574	1183.60259	1.5924	0.000944	-0.12865	-7.6264E-05	1.4638	0.00086774	592.8085308660459	26.77	0.36199	26.759	26.639	27.001	-0.010645	1194	100	0.902037	0.06064129	0.9005176	365.50705	0	24.57193						1195	16	5	NaN	NaN	NaN	9.0848E-05	1	15360	15360		110.61	79.044	1	997310			23145	7920	13378	13757	18394	18394					0.01813718368634909
RYLPTGSFPF	10	Unmodified						0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.808574	1183.60259	0.7517	0.00044562	0.13976	8.2854E-05	0.89147	0.00052847	592.8087128813175	27.06	0.072407	27.049	27.025	27.098	-0.010126	1200	76	0.89836043	0.045935333	0.896841	364.01727		18.613098	0.15164	0.00067776	-0.002598	NaN	97.85	146	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15393			23146	7920	13378	13757							0.01813718368634909
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.35060564535	2	649.350606	1296.68666	2.4548	0.001594	-0.68688	-0.00044603	1.7679	0.001148	649.3506446539868	30.101	0.3379	30.101	30.029	30.366	0	1104	103	0.9570911	0.06232065	0.9570911	387.4251	0	25.22705						824	15	4	NaN	NaN	NaN	1.7568E-11	1	18720	18720		111.05	77.623	1	732980			23147	7920	13379	13758	18395	18395					0.05018249465547342
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.35060564535	2	649.350606	1296.68666	1.6861	0.0010949	-1.7761	-0.0011533	-0.089955	-5.8412E-05	649.3498824554266	30.172	0.41024	30.166	30.021	30.431	-0.0064106	1107	82	0.9552588	0.049476504	0.9537394	386.68344	0	20.027832						925	18	4	NaN	NaN	NaN	7.6427E-08	1	17884	17884		101.27	75.16	1	748910			23148	7920	13379	13758	18396	18396					0.05018249465547342
RYLQDLLAW	9	Unmodified	_RYLQDLLAW_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3218482059	2	589.321848	1176.62914	1.9991	0.0011781	-2.2995	-0.0013552	-0.3004	-0.00017703	589.3201600875589	29.715	0.28959	29.715	29.667	29.956	0	1164	82	0.9204082	0.049583375	0.9204082	372.97653	0	20.092651						568	13	3	NaN	NaN	NaN	0.048656	1	15717	15717		47.482	21.367	1	249280			23149	7990	13380	13759	18397	18397					0.04789407259977452
RYLQDLLAW	9	Unmodified	_RYLQDLLAW_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3218482059	2	589.321848	1176.62914	1.2577	0.00074117	-1.8816	-0.0011089	-0.6239	-0.00036768	589.3207432752073	29.811	0.3378	29.803	29.707	30.045	-0.0070648	1161	103	0.9222442	0.06243503	0.92072475	373.72055	0	25.300507						606	15	3	NaN	NaN	NaN	0.070055	1	15146	15146		40.154	12.858	1	242830			23150	7990	13380	13759	18398	18398					0.04789407259977452
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3324128922	2	613.332413	1224.65027	1.341	0.00082247	-1.1895	-0.00072957	0.15147	9.2901E-05	613.3314594234669	18.916	0.12006	18.916	18.892	19.012	0	1146	49	0.93142134	0.029358983	0.93142134	377.26785	0	11.891724						172	6	3	NaN	NaN	NaN	0.14227	1	17100	17100		33.425	7.3104	1	22439			23151	478	13381	13760	18399	18399					0.04693372568817722
RYLQKIEEF	9	Unmodified	_RYLQKIEEF_					0	0	0		ENSG00000026559|ENST00000371571|KCNG1;nc|ENSG00000026559|Q9UIX4-2|KCNG1;KCNG1|p.R167C|1|0.07|ENSG00000026559|chr20:51009840-51009840|G/A|missense_variant	ENSG00000026559|ENST00000371571|KCNG1	ENSG00000026559|ENST00000371571|KCNG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.2240340836666	3	409.224034	1224.65027	2.6246	0.001074	-1.6018	-0.00065551	1.0228	0.00041853	409.22364300129743	19.346	0.072071	19.332	19.332	19.404	-0.014141	1536	22	0.69119483	0.013025939	0.6896754	419.94397	0	7.9140625						34	4	2	NaN	NaN	NaN	0.25424	1	16418	16418		21.85	12.931	1	1949.9			23152	478	13381	13760	18400	18400					0.04693372568817722
RYLQQAAP	8	Unmodified	_RYLQQAAP_					0	0	0			REV__ENSG00000171135|ENST00000647897|JAGN1	REV__ENSG00000171135|ENST00000647897|JAGN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.75888380834994	2	473.758884	945.503215	1.4001	0.00066333	-4.2924	-0.0020336	-2.8923	-0.0013702	473.757526987318	13.252	0.072043	13.252	13.228	13.3	0	1335	55	0.8154261	0.033261716	0.8154261	331.36902	0	13.516754						71	4	2	NaN	NaN	NaN	0.80692	1	6963	6963		8.2903	0	1	4685.5	+		23153	10614	13382	13761	18401	18401					0.028283204745548574
RYLQQALDW	9	Unmodified	_RYLQQALDW_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.8091049714	2	596.809105	1191.60366	1.2069	0.0007203	-3.2948	-0.0019664	-2.0879	-0.0012461	596.8076631578772	23.947	0.14472	23.947	23.899	24.044	0	1167	52	0.91857195	0.031222522	0.91857195	372.17825	0	12.650482						128	7	3	NaN	NaN	NaN	0.51576	1	16199	16199		8.962	3.2678	1	14776			23154	5048	13383	13762	18402	18402					0.015519327375386638
RYLQQALDW	9	Unmodified	_RYLQQALDW_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.8091049714	2	596.809105	1191.60366	1.1	0.00065651	-1.1987	-0.00071538	-0.098643	-5.8871E-05	596.8093758272901	24.019	0.16891	24.006	23.934	24.103	-0.012747	1173	52	0.91489893	0.03122592	0.9133795	370.69003	0	12.651825						145	8	2	NaN	NaN	NaN	0.41766	1	15585	15585		13.003	0.95414	1	16445			23155	5048	13383	13762	18403	18403					0.015519327375386638
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8216810304	2	554.821681	1107.62881	1.778	0.00098649	-0.42805	-0.00023749	1.35	0.000749	554.8215520697483	22.429	0.14449	22.429	22.38	22.525	0	1197	76	0.9001988	0.04597509	0.9001988	365.05032	0	18.64389						364	7	4	NaN	NaN	NaN	0.002766	1	13191	13191		125.02	35.764	1	332520			23156	3620	13384	13763	18404	18404					0.0792998754011478
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.8216810304	2	554.821681	1107.62881	1.742	0.00096648	-0.94372	-0.00052359	0.79825	0.00044289	554.8213850295261	22.5	0.16864	22.486	22.39	22.559	-0.013731	1203	70	0.8965218	0.042301655	0.89500237	363.5592	0	17.154236						478	8	5	NaN	NaN	NaN	0.013225	1	12819	12819		104.2	37.717	1	371070			23157	3620	13384	13763	18405	18405					0.0792998754011478
RYLRELPLLF	10	Unmodified	_RYLRELPLLF_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5993238222	3	440.599324	1318.77614	1.2371	0.00054506	-2.7769	-0.0012235	-1.5398	-0.00067843	440.59809468366274	27.929	0.19302	27.929	27.857	28.05	0	1425	52	0.7599118	0.031514466	0.7599118	461.32693	0	19.131775						223	9	3	NaN	NaN	NaN	0.48915	1	19100	19100		19.904	6.2659	1	29987			23158	2234	13385	13764	18406	18406					0.12950504144941988
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.80857365515	2	526.808574	1051.60259	1.2725	0.00067037	-0.72498	-0.00038193	0.54753	0.00028844	526.8078280436454	14.549	0.11993	14.549	14.501	14.621	0	1209	37	0.892844	0.022069216	0.892844	362.30475	0	8.955414						191	6	3	NaN	NaN	NaN	0.03533	1	10709	10709		53.14	13.682	1	35046			23159	2627	13386	13765	18407	18407					0.07885718368652306
RYLSKATTL	9	Unmodified						0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.808574	1051.60259	0.98979	0.00052143	-2.1215	-0.0011176	-1.1317	-0.00059618	526.8081262510877	14.956	0.12023	14.944	14.92	15.04	-0.011738	1212	34	0.8910048	0.020233393	0.88948536	361.5584		8.210449	0.19746	-0.001196	-0.0016793	NaN	53.14	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10560			23160	2627	13386	13765							0.07885718368652306
RYLSKVLEL	9	Unmodified	_RYLSKVLEL_					0	0	0		nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF	nc|nan|Q8WUR7-2|C15orf40	nc|nan|Q8WUR7-2|C15orf40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.83987378355	2	560.839874	1119.66519	1.5968	0.00089557	-2.1267	-0.0011927	-0.52984	-0.00029716	560.8387056127123	21.464	0.19279	21.464	21.392	21.585	0	1185	43	0.90755045	0.025725186	0.90755045	367.98294	0	10.430756						203	9	3	NaN	NaN	NaN	0.16939	1	13679	13679		27.296	5.5252	1	24114			23161	4682	13387	13766	18408	18408					0.11014864436833705
RYLSPKWIKMF	11	Unmodified	_RYLSPKWIKMF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.2759637954999	3	490.275964	1467.80606	1.7352	0.00085074	-2.1442	-0.0010513	-0.40902	-0.00020053	490.60915216006464	23.778	0.072184	23.778	23.778	23.851	0	1326	73	0.8209676	0.044315398	0.8209676	497.8684	0	26.874664						125	4	3	NaN	NaN	NaN	0.61966	1	20462	20462		12.73	11.205	1	10768			23162	3938	13388	13767	18409	18409					0.09087119818582323
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.60396899043326	3	482.603969	1444.79008	1.8375	0.00088678	-2.244	-0.001083	-0.40649	-0.00019618	482.6027897365968	20.983	0.36115	20.983	20.887	21.248	0	1302	127	0.8357362	0.07751006	0.8357362	506.9	0	47.012268						1200	16	4	NaN	NaN	NaN	0.044446	1	20361	20361		51.246	42.79	1	203040			23163	4112;7030	13389	13768	18410	18410					0.08547413581686669
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4023152523499	2	723.402315	1444.79008	1.4237	0.0010299	-0.56682	-0.00041004	0.85691	0.00061989	723.9040122443167	20.983	0.072092	20.983	20.935	21.007	0	1002	25	1.0192708	0.014603853	1.0192708	412.149	0	5.905121						37	4	2	NaN	NaN	NaN	0.71355	1	20362	20362		8.9416	5.3622	1	2255.4			23164	4112;7030	13389	13768	18411	18411					0.08547413581686669
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.60396899043326	3	482.603969	1444.79008	1.7133	0.00082686	-2.0087	-0.00096942	-0.29539	-0.00014256	482.6027513772972	22.308	0.12037	22.294	22.27	22.39	-0.013731	1305	109	0.83389086	0.06645155	0.8323714	505.7807	0	40.30493						274	6	2	NaN	NaN	NaN	0.43953	1	19389	19389		20.636	13.829	1	32165			23165	4112;7030	13389	13768	18412	18412					0.08547413581686669
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.60396899043326	3	482.603969	1444.79008	1.738	0.00083876	-1.6367	-0.00078987	0.10131	4.889E-05	482.6032876145128	22.018	0.072205	22.004	22.004	22.077	-0.013895	1308	88	0.83204526	0.05351591	0.8305259	504.66132	0	32.459106						164	4	2	NaN	NaN	NaN	0.75417	1	19390	19390		3.9007	0.59628	1	17976			23166	4112;7030	13389	13768	18413	18413					0.08547413581686669
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(53)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000448133.1_1_13:61211649-61211793:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.93560719779987	3	487.935607	1460.78499	2.6818	0.0013085	-2.4424	-0.0011917	0.23939	0.00011681	487.93473228898335	18.125	0.31172	18.125	18.005	18.316	0	1347	94	0.8080346	0.057281017	0.8080346	490.04727	0	34.739105						952	14	5	NaN	NaN	NaN	0.037667	1	20438	20438		52.967	32.711	1	330550			23167	4112;7030	13389	13769	18414	18414		445			0.07303109719055101
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5;ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	ENSG00000120697|ENST00000239891|ALG5	ENSG00000120697|ENST00000239891|ALG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.3221825569001	2	568.322183	1134.62981	1.7893	0.0010169	-2.4762	-0.0014073	-0.68687	-0.00039036	568.3208880127185	21.127	0.21678	21.127	21.055	21.272	0	1170	55	0.91673553	0.03306091	0.91673553	371.64758	0	13.403015						327	10	3	NaN	NaN	NaN	0.057383	1	14275	14275		43.776	17.975	1	121750			23168	2269	13390	13770	18415	18415					0.06788246699693445
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5;ALG5|p.R307Q|1|0.29|ENSG00000120697|chr13:36949997-36949997|C/T|missense_variant	ENSG00000120697|ENST00000239891|ALG5	ENSG00000120697|ENST00000239891|ALG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.3221825569001	2	568.322183	1134.62981	1.3251	0.00075311	-1.2544	-0.0007129	0.07075	4.0209E-05	568.3214839982213	21.416	0.19243	21.402	21.258	21.45	-0.014004	1167	61	0.91857195	0.03674233	0.9170525	372.39206	0	14.895447						312	9	4	NaN	NaN	NaN	0.10206	1	13811	13811		35.523	17.553	1	68740			23169	2269	13390	13770	18416	18416					0.06788246699693445
RYLTSGGFF	9	Unmodified	_RYLTSGGFF_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2665416649501	2	524.266542	1046.51853	2.1445	0.0011243	1.3459	0.0007056	3.4904	0.0018299	524.2671660275097	18.266	0.28805	18.252	18.156	18.444	-0.01395	1404	49	0.77288127	0.029636562	0.7713618	313.64508	0	12.026886						381	13	3	NaN	NaN	NaN	0.61413	1	10271	10271		4.9097	0	1	106530			23170	7907	13391	13771	18417	18417					-0.0028681272824542248
RYLTSGGFF	9	Unmodified						0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.266542	1046.51853	2.1005	0.0011012	0.98182	0.00051473	3.0823	0.0016159	524.2674736495828	18.077	0.28778	18.077	18.029	18.316	0	1404	43	0.77288127	0.025929153	0.77288127	313.64508		10.522369	-0.087514	-0.00026261	0.00075972	NaN	4.9097	337	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103530			23171	7907	13391	13771							-0.0028681272824542248
RYLTVAAIF	9	Unmodified	_RYLTVAAIF_					0	0	0		ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A	ENSG00000137285|ENST00000259818|TUBB2B	ENSG00000137285|ENST00000259818|TUBB2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3082095144	2	527.30821	1052.60187	1.4282	0.00075308	-4.1446	-0.0021855	-2.7164	-0.0014324	527.3063990885036	27.567	0.072437	27.567	27.519	27.591	0	1239	61	0.87444305	0.036825776	0.87444305	354.83353	0	14.943237						148	4	4	NaN	NaN	NaN	0.25548	1	10760	10760		21.771	3.9721	1	36270			23172	3078	13392	13772	18418	18418					0.07766923719600527
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3003844823	2	520.300384	1038.58622	1.9005	0.00098886	-1.0505	-0.00054659	0.85001	0.00044226	520.2999006599603	26.577	0.38615	26.577	26.36	26.746	0	1257	70	0.86339295	0.04236108	0.86339295	350.4106	0	17.192383						509	17	3	NaN	NaN	NaN	0.5168	1	10158	10158		8.9191	2.0559	1	88146			23173	5542;1496	13393	13773	18419	18419					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3003844823	2	520.300384	1038.58622	2.8958	0.0015067	-1.9609	-0.0010203	0.93487	0.00048642	520.2986289537611	25.708	0.38609	25.708	25.66	26.046	0	1248	202	0.8689189	0.123627186	0.8689189	352.65335	0	50.17444						1441	17	6	NaN	NaN	NaN	0.0072287	1	10159	10159		98.041	56.257	1	2582400			23174	5542;1496	13393	13773	18420	18420					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.593492498	1	1039.59349	1038.58622	2.2183	0.0023062	-0.8503	-0.00088397	1.368	0.0014222	1039.5927817799238	25.708	0.16888	25.708	25.684	25.853	0	135	196	1.5387528	0.115128994	1.5387528	312.2577	0	23.363007						455	8	4	NaN	NaN	NaN	0.2961	1	10160	10160		19.164	6.1607	1	99127			23175	5542;1496	13393	13773	18421	18421					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3003844823	2	520.300384	1038.58622	1.2229	0.00063626	-1.7657	-0.0009187	-0.54284	-0.00028244	520.3001899498462	27.759	0.12065	27.75	27.702	27.822	-0.009552	1254	37	0.8652351	0.022104979	0.86371565	351.15826	0	8.9713745						93	6	2	NaN	NaN	NaN	0.61852	1	9950	9950		4.7291	1.5175	1	8117.5			23176	5542;1496	13393	13773	18422	18422					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3003844823	2	520.300384	1038.58622	1.1314	0.00058869	-0.76702	-0.00039908	0.36443	0.00018961	520.2997573018015	26.77	0.19307	26.759	26.663	26.856	-0.010645	1257	49	0.86339295	0.029470205	0.8618735	350.4106	0	11.960571						230	9	3	NaN	NaN	NaN	0.16939	1	9951	9951		27.296	15.748	1	42611			23177	5542;1496	13393	13773	18423	18423					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.3003844823	2	520.300384	1038.58622	3.1954	0.0016626	-1.3863	-0.00072129	1.8091	0.00094128	520.2990999953207	25.756	0.38613	25.745	25.648	26.034	-0.0116	1248	202	0.8689189	0.12360042	0.86739945	352.65335	0	50.163605						1611	17	6	NaN	NaN	NaN	0.0018626	1	9952	9952		111.43	50.162	1	2736900			23178	5542;1496	13393	13773	18424	18424					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.593492498	1	1039.59349	1038.58622	2.1179	0.0022017	0.31219	0.00032455	2.4301	0.0025263	1039.5941453371693	25.756	0.1931	25.745	25.696	25.89	-0.0116	135	160	1.5387528	0.09383452	1.5372335	312.2577	0	19.041748						480	9	4	NaN	NaN	NaN	0.44082	1	9954	9954		12.049	3.7584	1	89646			23179	5542;1496	13393	13773	18425	18425					0.06846637202556849
RYLTVAAVF	9	Unmodified						0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	520.300384	1038.58622	1.7956	0.00093426	-4.6477	-0.0024182	-2.8521	-0.0014839	520.2984697809851	28.098	0.096514	28.098	28.001	28.098	0	1260	43	0.8615505	0.0257864	0.8615505	349.6629		10.465485	0.17409	-0.0016447	-0.0010826	NaN	4.7291	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6023.2			23180	5542;1496	13393	13773							0.06846637202556849
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.6040571843	1	1069.60406	1068.59678	2.0251	0.0021661	-0.5497	-0.00058796	1.4754	0.0015781	1069.6030925136101	25.322	0.12062	25.322	25.274	25.395	0	105	58	1.5564433	0.03359604	1.5564433	315.73132	0	6.815094						131	6	2	NaN	NaN	NaN	0.27608	1	11509	11509		20.449	4.986	1	17187			23181	6137;5007	13394	13774	18426	18426					0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.3056668254501	2	535.305667	1068.59678	2.7304	0.0014616	-1.2413	-0.00066445	1.4892	0.00079717	535.3051815478816	25.322	0.28955	25.322	25.25	25.539	0	1233	76	0.87812483	0.046019793	0.87812483	356.25864	0	18.67041						548	13	6	NaN	NaN	NaN	0.013281	1	11510	11510		82.96	38.322	1	873950			23182	6137;5007	13394	13774	18427	18427					0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.3056668254501	2	535.305667	1068.59678	2.2705	0.0012154	0.022701	1.2152E-05	2.2932	0.0012275	535.3057423141054	25.37	0.33777	25.358	25.262	25.6	-0.012011	1233	73	0.87812483	0.044186175	0.8766054	356.25864	0	17.926483						666	15	6	NaN	NaN	NaN	0.023828	1	11228	11228		67.154	30.568	1	898320			23183	6137;5007	13394	13774	18428	18428					0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.6040571843	1	1069.60406	1068.59678	1.5782	0.0016881	0.91558	0.00097931	2.4938	0.0026674	1069.60513748975	25.37	0.12061	25.358	25.31	25.431	-0.012011	102	58	1.5582114	0.033588886	1.556692	316.09	0	6.8136597						172	6	3	NaN	NaN	NaN	0.25448	1	11229	11229		21.835	7.7934	1	17898			23184	6137;5007	13394	13774	18429	18429					0.06522619856991696
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.83987378355	2	560.839874	1119.66519	2.3217	0.0013021	-0.61598	-0.00034546	1.7058	0.00095666	560.8397255538326	19.876	0.26444	19.876	19.828	20.093	0	1200	70	0.89836043	0.042292476	0.89836043	364.25665	0	17.148285						466	12	4	NaN	NaN	NaN	4.3435E-18	1	13680	13680		160.77	58.725	1	374840			23185	2072	13395	13775	18430	18430					0.11014864436833705
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.83987378355	2	560.839874	1119.66519	1.9975	0.0011203	-1.5478	-0.00086804	0.44972	0.00025222	560.8391218994544	20.044	0.40925	20.03	19.909	20.319	-0.014141	1200	58	0.89836043	0.034937263	0.896841	364.25668	0	14.165955						689	18	4	NaN	NaN	NaN	0.010878	1	13277	13277		90.252	45.613	1	384400			23186	2072	13395	13775	18431	18431					0.11014864436833705
RYLWATVTI	9	Unmodified	_RYLWATVTI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8189413762001	2	561.818941	1121.62333	1.894	0.0010641	-1.5672	-0.00088051	0.3267	0.00018355	561.818257244001	27.422	0.28965	27.422	27.35	27.639	0	1212	73	0.8910048	0.044128895	0.8910048	361.26654	0	17.892487						543	13	5	NaN	NaN	NaN	0.012495	1	13764	13764		85.344	35.029	1	254210			23187	701	13396	13776	18432	18432					0.06738308748322197
RYLWATVTI	9	Unmodified	_RYLWATVTI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8189413762001	2	561.818941	1121.62333	1.4755	0.00082896	-1.3533	-0.00076032	0.12219	6.8648E-05	561.8183415061252	27.47	0.28961	27.46	27.364	27.653	-0.0095501	1212	73	0.8910048	0.044124186	0.88948536	361.26654	0	17.890564						518	13	4	NaN	NaN	NaN	0.0012818	1	13353	13353		113.18	57.77	1	241500			23188	701	13396	13776	18433	18433					0.06738308748322197
RYMDDYIFTYI	11	Unmodified	_RYMDDYIFTYI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	750.3474026419	2	750.347403	1498.68025	1.2609	0.00094613	-2.1242	-0.0015939	-0.86325	-0.00064774	750.3473625336669	31.234	0.16895	31.229	31.157	31.326	-0.0050716	1008	40	1.0156195	0.023734927	1.0141001	410.53247	0	9.594116						148	8	3	NaN	NaN	NaN	0.29813	1	19562	19562		25.694	0	1	11237			23189	3957	13397	13777	18434	18434					-0.04914056548136614
RYMDLAENARF	11	Unmodified	_RYMDLAENARF_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3351609338999	2	693.335161	1384.65577	1.331	0.00092284	-1.8222	-0.0012634	-0.49116	-0.00034054	693.33356394979	20.549	0.096283	20.535	20.487	20.584	-0.014141	1080	31	0.9717421	0.018307865	0.97022265	393.09222	0	7.405945						89	5	3	NaN	NaN	NaN	0.42273	1	19002	19002		21.237	10.877	1	5768.7			23190	1181	13398	13778	18435	18435					-0.021172719110154503
RYMEVSGNL	9	Unmodified	_RYMEVSGNL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7607661828001	2	534.760766	1067.50698	2.7439	0.0014673	-1.704	-0.00091125	1.0399	0.00055609	534.7597397946937	18.484	0.19184	18.484	18.46	18.652	0	1257	70	0.86339295	0.04238403	0.86339295	350.2864	0	17.195587						255	9	2	NaN	NaN	NaN	0.04743	1	11436	11436		48.002	12.706	1	85472			23191	5307	13399	13779	18436	18436					-0.02407377813869971
RYMEVSGNL	9	Unmodified	_RYMEVSGNL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7607661828001	2	534.760766	1067.50698	1.6463	0.00088038	-0.31566	-0.0001688	1.3306	0.00071158	534.7604391532493	18.53	0.16792	18.516	18.468	18.636	-0.01395	1254	73	0.8652351	0.04422921	0.86371565	351.03378	0	17.944183						221	8	2	NaN	NaN	NaN	0.064504	1	11167	11167		40.957	19.122	1	83365			23192	5307	13399	13779	18437	18437					-0.02407377813869971
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(54)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7582234938501	2	542.758223	1083.50189	1.7875	0.00097016	-5.9865	-0.0032492	-4.199	-0.002279	542.7570927858687	15.558	0.24011	15.558	15.51	15.75	0	1278	64	0.85049206	0.03870684	0.85049206	344.98752	0	15.700775						464	11	4	NaN	NaN	NaN	0.034172	1	12111	12111		53.652	16.421	1	99334			23193	5307	13399	13780	18438	18438		552			-0.03651681676501539
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(47)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7582234938501	2	542.758223	1083.50189	1.9542	0.0010607	-3.969	-0.0021542	-2.0149	-0.0010936	542.7572667762126	15.58	0.23975	15.568	15.52	15.76	-0.012201	1278	58	0.85049206	0.035024226	0.8489726	344.98752	0	14.20697						367	11	3	NaN	NaN	NaN	0.050761	1	11804	11804		46.588	24.737	1	100320			23194	5307	13399	13780	18439	18439		552			-0.03651681676501539
RYMPFAPAI	9	Unmodified	_RYMPFAPAI_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.28113748415	2	533.281137	1064.54772	1.8901	0.001008	-2.7887	-0.0014871	-0.89853	-0.00047917	533.2797985891999	25.081	0.19304	25.081	24.96	25.153	0	1272	61	0.854179	0.03685367	0.854179	346.56052	0	14.952393						189	9	3	NaN	NaN	NaN	0.45297	1	11332	11332		11.548	0.37812	1	15354			23195	5255	13400	13781	18440	18440					0.018030082963832683
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.21710800146667	3	430.217108	1287.62949	1.3885	0.00059734	-2.2427	-0.00096483	-0.8542	-0.00036749	430.216460453782	13.012	0.52844	13.012	12.868	13.397	0	1377	79	0.7895419	0.04813856	0.7895419	479.43478	0	29.231232						774	23	5	NaN	NaN	NaN	0.033293	1	18559	18559		47.424	39.147	1	221400			23196	2698	13401	13782	18441	18441					-0.0028149629181370983
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.21710800146667	3	430.217108	1287.62949	1.8573	0.00079904	-2.5039	-0.0010772	-0.64658	-0.00027817	430.2163811856078	13.565	0.19217	13.565	13.565	13.757	0	1377	34	0.7895419	0.020351946	0.7895419	479.43478	0	12.358368						108	9	2	NaN	NaN	NaN	0.0085408	1	18560	18560		51.467	38.897	1	10963			23197	2698	13401	13782	18442	18442					-0.0028149629181370983
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.21710800146667	3	430.217108	1287.62949	1.479	0.00063631	-1.3993	-0.00060201	0.079715	3.4295E-05	430.21587085493337	13.325	0.12011	13.325	13.325	13.445	0	1374	40	0.791392	0.024052322	0.791392	480.55826	0	14.605316						106	6	2	NaN	NaN	NaN	0.27719	1	18561	18561		28.296	26.057	1	20590			23198	2698	13401	13782	18443	18443					-0.0028149629181370983
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.21710800146667	3	430.217108	1287.62949	1.0609	0.00045642	-1.7652	-0.00075942	-0.70431	-0.00030301	430.2162346836116	13.877	0.19175	13.866	13.794	13.986	-0.010672	1374	58	0.791392	0.035164833	0.7898726	480.55826	0	21.35318						226	9	4	NaN	NaN	NaN	0.14619	1	17732	17732		32.377	29.072	1	45117			23199	2698	13401	13782	18444	18444					-0.0028149629181370983
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.21710800146667	3	430.217108	1287.62949	0.9759	0.00041985	-1.2281	-0.00052834	-0.25217	-0.00010849	430.550970163434	13.493	0.19197	13.483	13.387	13.579	-0.010098	1374	46	0.791392	0.027755678	0.7898726	480.55826	0	16.854126						201	9	3	NaN	NaN	NaN	0.10581	1	17733	17733		30.925	27.331	1	52812			23200	2698	13401	13782	18445	18445					-0.0028149629181370983
RYMPPAHRNFL	11	Unmodified	_RYMPPAHRNFL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.91179599493336	3	467.911796	1400.71356	1.2315	0.00057625	-2.5153	-0.0011769	-1.2838	-0.00060069	468.24472822393574	16.97	0.095909	16.957	16.885	16.981	-0.013294	1350	28	0.80618626	0.016637146	0.8046668	489.1227	0	10.093964						51	5	2	NaN	NaN	NaN	0.44296	1	19126	19126		11.467	8.6781	1	4350.8			23201	2698	13402	13783	18446	18446					0.02923034805098723
RYMPPAHRNFL	11	Unmodified	_RYMPPAHRNFL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.91179599493336	3	467.911796	1400.71356	1.1643	0.00054478	0.33291	0.00015577	1.4972	0.00070055	467.9111353842312	17.114	0.04804	17.1	17.1	17.149	-0.013569	1350	28	0.80618626	0.016635358	0.8046668	489.12268	0	10.0928955						47	3	2	NaN	NaN	NaN	0.6085	1	19127	19127		12.872	8.9714	1	4971			23202	2698	13402	13783	18447	18447					0.02923034805098723
RYMPPAHRNFL	11	Unmodified	_RYMPPAHRNFL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.91179599493336	3	467.911796	1400.71356	1.1819	0.00055301	0.6723	0.00031458	1.8542	0.00086758	467.91119837420484	17.066	0.047968	17.053	17.005	17.053	-0.013294	1353	28	0.8043377	0.016637146	0.80281824	488.00113	0	10.093964						46	3	2	NaN	NaN	NaN	0.18551	1	19128	19128		33.567	30.778	1	4778.6			23203	2698	13402	13783	18448	18448					0.02923034805098723
RYMPQNPHI	9	Unmodified	_RYMPQNPHI_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.29002514875	2	578.290025	1154.5655	1.6946	0.00097998	-2.9547	-0.0017087	-1.2601	-0.0007287	578.2882636598663	15.318	0.19224	15.318	15.27	15.462	0	1224	82	0.883646	0.04964775	0.883646	358.15872	0	20.1232						186	9	2	NaN	NaN	NaN	0.04743	1	14963	14963		55.494	18.907	1	20190			23204	1360	13403	13784	18449	18449					-0.005602764487548484
RYMPQNPHI	9	Unmodified	_RYMPQNPHI_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.29002514875	2	578.290025	1154.5655	1.5757	0.00091121	-2.936	-0.0016979	-1.3603	-0.00078666	578.2889585666954	15.436	0.16787	15.424	15.352	15.52	-0.012202	1224	73	0.883646	0.044133663	0.88212657	358.15872	0	17.888214						198	8	4	NaN	NaN	NaN	0.04743	1	14471	14471		55.494	23.933	1	17409			23205	1360	13403	13784	18450	18450					-0.005602764487548484
RYMPQNPHII	10	Unmodified	_RYMPQNPHII_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.5571302481667	3	423.55713	1267.64956	1.8571	0.0007866	-2.7121	-0.0011487	-0.85495	-0.00036212	423.5562839775482	17.813	0.071934	17.813	17.765	17.837	0	1425	37	0.7599118	0.022244275	0.7599118	461.5195	0	13.509674						82	4	3	NaN	NaN	NaN	0.6262	1	18187	18187		13.101	10.862	1	6099.7			23206	1360	13404	13785	18451	18451					0.026442546481575846
RYMPQNPHII	10	Unmodified	_RYMPQNPHII_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.8320571389501	2	634.832057	1267.64956	2.0447	0.0012981	-1.8334	-0.0011639	0.21131	0.00013415	634.8312106424086	17.789	0.14384	17.789	17.741	17.885	0	1155	37	0.92591566	0.022023976	0.92591566	374.89597	0	8.917328						141	7	3	NaN	NaN	NaN	0.38087	1	18188	18188		24.562	11.559	1	15558			23207	1360	13404	13785	18452	18452					0.026442546481575846
RYMPQNPHII	10	Unmodified	_RYMPQNPHII_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.8320571389501	2	634.832057	1267.64956	2.0859	0.0013242	-3.6003	-0.0022856	-1.5144	-0.00096136	634.829664933891	18.026	0.21594	18.012	17.916	18.132	-0.013786	1155	40	0.92591566	0.02385801	0.9243962	374.896	0	9.659943						187	10	3	NaN	NaN	NaN	0.28676	1	17374	17374		42.318	26.496	1	18797			23208	1360	13404	13785	18453	18453					0.026442546481575846
RYMPQNPHII	10	Unmodified						0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	423.55713	1267.64956	1.9554	0.00082823	-0.94514	-0.00040032	1.0103	0.00042791	423.55693023960674	18.002	0.095984	17.988	17.94	18.036	-0.013786	1428	31	0.7580582	0.018536866	0.75653875	460.39374		11.258087	0.087495	0.00082336	-0.0016865	NaN	13.101	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5720.4			23209	1360	13404	13785							0.026442546481575846
RYMSINTHL	9	Unmodified	_RYMSINTHL_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.7898579732502	2	567.789858	1133.56516	2.0867	0.0011848	-2.1318	-0.0012104	-0.045136	-2.5628E-05	567.7886374895656	17.573	0.14382	17.573	17.525	17.669	0	1185	40	0.90755045	0.023888946	0.90755045	367.92807	0	9.684784						138	7	3	NaN	NaN	NaN	0.024359	1	14224	14224		66.481	31.185	1	16386			23210	2819	13405	13786	18454	18454					0.003723038314092264
RYMSINTHL	9	Unmodified	_RYMSINTHL_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7898579732502	2	567.789858	1133.56516	1.6496	0.00093663	-1.0519	-0.00059726	0.59772	0.00033938	567.7896429895801	17.738	0.16779	17.724	17.652	17.82	-0.013786	1188	52	0.90571284	0.031249523	0.9041934	367.18307	0	12.668793						185	8	3	NaN	NaN	NaN	0.38254	1	13770	13770		14.45	2.4008	1	17440			23211	2819	13405	13786	18455	18455					0.003723038314092264
RYMVALQI	8	Unmodified	_RYMVALQI_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.28113748415007	2	497.281137	992.547722	1.098	0.00054603	-4.7569	-0.0023655	-3.6588	-0.0018195	497.27931733426277	24.502	0.12065	24.489	24.465	24.586	-0.012747	1305	37	0.83389086	0.022145689	0.8323714	338.64243	0	8.993347						100	6	3	NaN	NaN	NaN	0.49126	1	8157	8157		31.561	9.4347	1	8992.4			23212	1712	13406	13787	18456	18456					0.05115008296399992
RYNEKCFKL	9	Unmodified	_RYNEKCFKL_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.8779808685666	3	400.877981	1199.61211	1.2657	0.00050739	-1.1781	-0.00047225	0.08765	3.5137E-05	401.2116364262227	15.462	0.096122	15.462	15.438	15.534	0	1401	34	0.77473325	0.020371795	0.77473325	470.80807	0	12.380005						81	5	3	NaN	NaN	NaN	0.46215	1	16467	16467		18.233	13.923	1	5958.7			23213	1974	13407	13788	18457	18457					0.020291633825308963
RYNEKCFKL	9	Unmodified						0	0	0		ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	400.877981	1199.61211	1.8434	0.00073899	-1.2276	-0.0004921	0.61587	0.00024689	401.211784774149	15.7	0.047893	15.687	15.687	15.735	-0.012612	1386	43	0.78399014	0.025915146	0.7824707	476.43353		15.748718	0.1127	-3.2171E-05	0.0038687	NaN	18.233	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10444			23214	1974	13407	13788							0.020291633825308963
RYNLYYAYL	9	Unmodified	_RYNLYYAYL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.8138559983	2	619.813856	1237.61316	1.7503	0.0010849	-4.1235	-0.0025558	-2.3732	-0.0014709	619.8108111562838	25.588	0.21711	25.588	25.515	25.732	0	1113	85	0.9515937	0.051356077	0.9515937	385.3936	0	20.799103						360	10	4	NaN	NaN	NaN	0.10956	1	17465	17465		34.439	23.268	1	43013			23215	3076	13408	13789	18458	18458					0.0038570102308312926
RYNLYYAYL	9	Unmodified	_RYNLYYAYL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8138559983	2	619.813856	1237.61316	1.4542	0.00090131	-5.0752	-0.0031457	-3.6211	-0.0022444	620.3122022308937	25.612	0.19301	25.6	25.455	25.648	-0.0116	1116	85	0.94976085	0.051356077	0.9482414	384.65128	0	20.799103						334	9	3	NaN	NaN	NaN	0.23112	1	16735	16735		23.334	6.4761	1	40253			23216	3076	13408	13789	18459	18459					0.0038570102308312926
RYNPNLNTW	9	Unmodified	_RYNPNLNTW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.29107939375	2	589.291079	1176.56761	1.749	0.0010307	-1.3291	-0.00078324	0.41989	0.00024744	589.2900256749133	19.54	0.096003	19.54	19.516	19.612	0	1206	70	0.894683	0.042310774	0.894683	362.55215	0	17.1456						244	5	3	NaN	NaN	NaN	0.18779	1	15697	15697		26.115	12.652	1	25896			23217	5113	13409	13790	18460	18460					-0.013615244393122339
RYNPNLNTW	9	Unmodified	_RYNPNLNTW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.29107939375	2	589.291079	1176.56761	1.2753	0.00075151	-2.1383	-0.0012601	-0.86306	-0.00050859	589.2895002703133	19.587	0.14447	19.573	19.524	19.669	-0.014141	1230	73	0.8799654	0.044152796	0.878446	356.58817	0	17.892029						257	7	2	NaN	NaN	NaN	0.2345	1	15127	15127		23.118	10.115	1	33085			23218	5113	13409	13790	18461	18461					-0.013615244393122339
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.59093978286666	3	440.59094	1318.75099	0.93963	0.00041399	-3.6077	-0.0015895	-2.6681	-0.0011755	440.58913847828916	24.671	0.12059	24.671	24.623	24.743	0	1488	37	0.7209441	0.022295058	0.7209441	437.67056	0	13.534882						120	6	3	NaN	NaN	NaN	0.49667	1	19099	19099		19.592	7.2852	1	23160			23219	4362	13410	13791	18462	18462					0.1043644934236454
RYNPRTNQW	9	Unmodified	_RYNPRTNQW_					0	0	0		ENSG00000076321|ENST00000209884|KLHL20;KLHL20|p.E525D|1|0.06|ENSG00000076321|chr1:173775779-173775779|G/C|missense_variant;nc|ENSG00000076321|Q9Y2M5-2|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.2073774553333	3	412.207377	1233.6003	1.8423	0.00075941	-1.7951	-0.00073996	0.047171	1.9444E-05	412.20626463326477	13.517	0.16812	13.517	13.445	13.613	0	1548	28	0.6837494	0.016754866	0.6837494	415.38687	0	10.178833						91	8	2	NaN	NaN	NaN	0.28943	1	17365	17365		19.592	12.608	1	6908.5			23220	855	13411	13792	18463	18463					-0.007153173164397231
RYNPRTNQW	9	Unmodified						0	0	0		ENSG00000076321|ENST00000209884|KLHL20;KLHL20|p.E525D|1|0.06|ENSG00000076321|chr1:173775779-173775779|G/C|missense_variant;nc|ENSG00000076321|Q9Y2M5-2|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	412.207377	1233.6003	1.4213	0.00058586	-1.1341	-0.00046747	0.2872	0.00011839	412.5411969608097	13.637	0.19177	13.627	13.555	13.747	-0.010098	1545	31	0.68561107	0.018615544	0.6840916	416.51785		11.309204	0.05527	0.00041746	0.00017111	NaN	19.592	82	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5659			23221	855	13411	13792							-0.007153173164397231
RYNPSSHVL	9	Unmodified	_RYNPSSHVL_					0	0	0		nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28;ENSG00000155287|ENST00000370495|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.78034753195	2	536.780348	1071.54614	2.3192	0.0012449	-1.8907	-0.0010149	0.42846	0.00022999	536.7788496232088	13.853	0.14406	13.853	13.781	13.925	0	1275	31	0.85233563	0.018432856	0.85233563	345.78375	0	7.477997						97	7	2	NaN	NaN	NaN	0.16939	1	11630	11630		27.296	15.748	1	11107			23222	3872	13412	13793	18464	18464					0.01323090531991511
RYNPSSHVL	9	Unmodified						0	0	0		nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28;ENSG00000155287|ENST00000370495|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.780348	1071.54614	1.5964	0.00085694	-3.1532	-0.0016926	-1.5567	-0.00083563	536.7792624951651	13.997	0.071947	13.986	13.938	14.01	-0.010672	1272	28	0.854179	0.016588628	0.8526596	346.5316		6.729828	0.066611	-0.00084531	0.00016197	NaN	27.296	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4500.5			23223	3872	13412	13793							0.01323090531991511
RYNTRPLGQE	10	Unmodified	_RYNTRPLGQE_					0	0	0		ENST00000595529.1_1_19:41112383-41114583:+|nuORF;ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4	ENST00000595529.1_1_19:41112383-41114583:+|nuORF	ENST00000595529.1_1_19:41112383-41114583:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.8826709218333	3	411.882671	1232.62618	1.5715	0.00064729	6.7287	0.0027714	8.3003	0.0034187	411.88444633306204	16.326	0.096003	16.326	16.302	16.398	0	1446	52	0.7469324	0.031528115	0.7469324	453.77533	0	19.1539						113	5	2	NaN	NaN	NaN	0.62092	1	17346	17346		7.8039	5.7681	1	21545			23224	1048	13413	13794	18465	18465					0.019175321351667662
RYPAIIYNI	9	Unmodified	_RYPAIIYNI_					0	0	0		ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF	ENSG00000121073|ENST00000240333|SLC35B1	ENSG00000121073|ENST00000240333|SLC35B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8189413762001	2	561.818941	1121.62333	1.8029	0.0010129	-2.0669	-0.0011613	-0.26406	-0.00014836	561.8181629128565	25.226	0.43424	25.214	24.948	25.382	-0.012011	1212	106	0.8910048	0.06436515	0.88948536	361.26654	0	26.097443						490	19	2	NaN	NaN	NaN	0.043119	1	13351	13351		49.833	23.101	1	102860			23225	2288	13414	13795	18466	18466					0.06738308748322197
RYPAVDYNL	9	Unmodified	_RYPAVDYNL_					0	0	0		ENSG00000198719|ENST00000366756|DLL1;DLL1|p.V644M|1|0.32|ENSG00000198719|chr6:170283349-170283349|C/T|missense_variant	ENSG00000198719|ENST00000366756|DLL1	ENSG00000198719|ENST00000366756|DLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7825558699	2	555.782556	1109.55056	1.1045	0.00061387	-0.84326	-0.00046867	0.26126	0.0001452	556.787541683079	20.887	0.1686	20.887	20.79	20.959	0	1233	73	0.87812483	0.044162333	0.87812483	356.09125	0	17.908417						257	8	3	NaN	NaN	NaN	0.31471	1	13253	13253		17.97	3.5447	1	23066			23226	5796	13415	13796	18467	18467					0.00016554954891034868
RYPCSLNEERF	11	Unmodified	_RYPCSLNEERF_					0	0	0			REV__nc|ENSG00000183765|O96017-6|CHEK2	REV__nc|ENSG00000183765|O96017-6|CHEK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.8908376521666	3	471.890838	1412.65068	1.1387	0.00053732	4.8825	0.002304	6.0211	0.0028413	471.8934397880612	14.957	0.14416	14.957	14.909	15.053	0	1422	31	0.7617651	0.01853484	0.7617651	462.13373	0	11.244415						80	7	2	NaN	NaN	NaN	0.74438	1	20164	20164		4.5433	0	1	6734.6	+		23227	13191	13416	13797	18468	18468					-0.03913575773617595
RYPDNLKHL	9	Unmodified	_RYPDNLKHL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.8804902748667	3	385.88049	1154.61964	1.73	0.00066759	-1.8311	-0.00070658	-0.10104	-3.8988E-05	385.8799191889223	14.093	0.21615	14.093	14.045	14.261	0	1446	40	0.7469324	0.024114966	0.7469324	454.11417	0	14.661224						217	10	4	NaN	NaN	NaN	0.012861	1	14981	14981		66.786	32.879	1	40017			23228	2833	13417	13798	18469	18469					0.04851638974469097
RYPDNLKHLY	10	Unmodified	_RYPDNLKHLY_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.23493312096673	3	440.234933	1317.68297	1.2865	0.00056637	-2.246	-0.00098877	-0.95948	-0.0004224	440.2341102098932	16.422	0.16781	16.422	16.374	16.542	0	1407	40	0.77102906	0.024080992	0.77102906	468.08005	0	14.619202						179	8	4	NaN	NaN	NaN	0.31827	1	19074	19074		26.989	13.526	1	21943			23229	2833	13418	13799	18470	18470					0.0368357969173303
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.9296211144334	3	477.929621	1430.76703	2.2034	0.0010531	-0.9099	-0.00043487	1.2935	0.00061821	477.92883622823405	19.78	0.33648	19.78	19.708	20.045	0	1377	163	0.7895419	0.09976375	0.7895419	478.92612	0	60.515472						586	15	3	NaN	NaN	NaN	0.021659	1	20282	20282		61.326	47.149	1	378150			23230	2833	13419	13800	18471	18471					0.06888110788622726
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.9296211144334	3	477.929621	1430.76703	1.8289	0.00087409	-1.4446	-0.00069039	0.38435	0.00018369	478.26357005712407	20.213	0.52958	20.198	19.958	20.487	-0.014141	1377	88	0.7895419	0.053655148	0.78802246	478.92612	0	32.54654						832	23	5	NaN	NaN	NaN	0.037667	1	19319	19319		52.967	38.007	1	282510			23231	2833	13419	13800	18472	18472					0.06888110788622726
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3907934383502	2	716.390793	1430.76703	2.438	0.0017466	0.16046	0.00011495	2.5985	0.0018615	716.892467033972	20.237	0.072159	20.222	20.222	20.295	-0.014143	1008	40	1.0156195	0.02373755	1.0141001	410.71072	0	9.599304						39	4	2	NaN	NaN	NaN	0.77633	1	19320	19320		1.1768	0.79172	1	2227.4			23232	2833	13419	13800	18473	18473					0.06888110788622726
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.89250732663334	3	382.892507	1145.65569	1.5203	0.00058211	-1.7516	-0.00067069	-0.23135	-8.8583E-05	382.89185890655915	21.055	0.1445	21.055	21.007	21.151	0	1542	124	0.6874725	0.07621205	0.6874725	418.00272	0	46.33908						605	7	4	NaN	NaN	NaN	0.14227	1	14658	14658		29.706	5.306	1	143640			23233	3698	13420	13801	18474	18474					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.8351227566501	2	573.835123	1145.65569	1.9371	0.0011116	-1.0724	-0.00061537	0.86473	0.00049621	573.8346970188647	21.055	0.31308	21.055	21.007	21.32	0	1197	97	0.9001988	0.05880046	0.9001988	364.90137	0	23.835144						663	14	5	NaN	NaN	NaN	0.033694	1	14660	14660		53.14	17.844	1	565010			23234	3698	13420	13801	18475	18475					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.89250732663334	3	382.892507	1145.65569	1.5258	0.00058421	-1.1493	-0.00044008	0.37644	0.00014413	382.8921529734084	21.2	0.24068	21.186	21.089	21.33	-0.014004	1539	121	0.68933374	0.07436532	0.6878143	419.13443	0	45.216187						799	11	4	NaN	NaN	NaN	0.061945	1	14174	14174		41.839	17.438	1	150840			23235	3698	13420	13801	18476	18476					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000567040.5_1_16:30087698-30094972:+|nuORF;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000567040.5_1_16:30087698-30094972:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.8351227566501	2	573.835123	1145.65569	1.6609	0.00095308	-0.7683	-0.00044088	0.89259	0.0005122	573.8347690064986	21.2	0.38503	21.186	21.065	21.45	-0.014004	1197	88	0.9001988	0.053325295	0.8986794	364.90137	0	21.615784						794	17	5	NaN	NaN	NaN	0.028117	1	14175	14175		60.984	37.133	1	601490			23236	3698	13420	13801	18477	18477					0.08869096151329359
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7856298751	2	581.78563	1161.55671	2.1478	0.0012495	-4.8245	-0.0028068	-2.6767	-0.0015573	582.284017025016	17.93	0.19189	17.916	17.772	17.964	-0.013786	1182	103	0.9093879	0.06250924	0.90786844	368.5662	0	25.334381						538	9	3	NaN	NaN	NaN	0.12866	1	14684	14684		31.675	18.212	1	84579			23237	3187	13421	13802	18478	18478					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.19284540559994	3	388.192845	1161.55671	2.437	0.00094603	-0.23635	-9.1751E-05	2.2006	0.00085427	388.1929648061593	17.906	0.071947	17.892	17.82	17.892	-0.013786	1521	37	0.70049703	0.02231443	0.6989776	425.85275	0	13.565582						53	4	2	NaN	NaN	NaN	0.2961	1	14686	14686		17.198	10.581	1	3966			23238	3187	13421	13802	18479	18479					-0.017609268135856837
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.81913834145	2	598.819138	1195.62372	1.6	0.00095812	-2.3353	-0.0013984	-0.73525	-0.00044028	598.8175798320991	26.625	0.16897	26.625	26.577	26.746	0	1167	73	0.91857195	0.04408127	0.91857195	372.1639	0	17.859741						326	8	5	NaN	NaN	NaN	0.032813	1	16335	16335		58.398	15.403	1	158680			23239	3107	13422	13803	18480	18480					0.03373683677500594
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.81913834145	2	598.819138	1195.62372	1.041	0.00062337	-2.1389	-0.0012808	-1.0979	-0.00065742	598.8175443759433	26.649	0.21719	26.639	26.59	26.808	-0.010645	1170	79	0.91673553	0.047770202	0.9152161	371.4199	0	19.35434						380	10	4	NaN	NaN	NaN	0.019815	1	15691	15691		63.765	30.34	1	162310			23240	3107	13422	13803	18481	18481					0.03373683677500594
RYPGEVVI	8	Unmodified	_RYPGEVVI_					0	0	0		ENST00000313899.11_1_4:83275300-83277776:-|nuORF	ENST00000313899.11_1_4:83275300-83277776:-|nuORF	ENST00000313899.11_1_4:83275300-83277776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5199932039001	1	932.519993	931.512717	2.0613	0.0019222	-9.5143	-0.0088723	-7.453	-0.0069501	932.5112574950509	28.098	0.1448	28.098	28.05	28.194	0	309	79	1.435777	0.04631865	1.435777	291.79953	0	9.413574						298	7	4	NaN	NaN	NaN	0.6053	1	6640	6640		24.961	0	1	56056			23241	6458	13423	13804	18482	18482					0.04422088760088627
RYPGEVVI	8	Unmodified						0	0	0		ENST00000313899.11_1_4:83275300-83277776:-|nuORF	ENST00000313899.11_1_4:83275300-83277776:-|nuORF	ENST00000313899.11_1_4:83275300-83277776:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	932.519993	931.512717	1.1954	0.0011147	-9.0644	-0.0084527	-7.869	-0.007338	932.51194471458	28.097	0.16896	28.088	28.04	28.209	-0.0089798	309	85	1.435777	0.049876332	1.4342575	291.79953		10.136597	-0.0048604	0.00024555	-0.00075972	NaN	24.961	334	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60092			23242	6458	13423	13804							0.04422088760088627
RYPGKFYRV	9	Unmodified	_RYPGKFYRV_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.8890972148666	3	395.889097	1184.64546	1.1788	0.00046668	-1.0598	-0.00041956	0.11902	4.7118E-05	395.88902422294075	14.357	0.19196	14.357	14.285	14.477	0	1422	34	0.7617651	0.020385087	0.7617651	462.9937	0	12.389862						156	9	3	NaN	NaN	NaN	0.13999	1	16006	16006		30.035	19.792	1	13676			23243	1078	13424	13805	18483	18483					0.060525332167117085
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3660587443001	2	572.366059	1142.71756	1.199	0.00068626	-0.91261	-0.00052234	0.28637	0.00016391	572.3653939638266	22.766	0.48213	22.752	22.583	23.065	-0.01354	1164	61	0.9204082	0.036734402	0.91888875	373.10477	0	14.890991						376	21	2	NaN	NaN	NaN	0.12328	1	14082	14082		32.453	18.411	1	70556			23244	5293	13425	13806	18484	18484					0.15191447570464334
RYPNLDFGW	9	Unmodified	_RYPNLDFGW_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2827230454001	2	584.282723	1166.55089	1.8601	0.0010868	4.6891	0.0027398	6.5493	0.0038266	584.2844930239697	27.253	0.21715	27.253	27.109	27.326	0	1206	79	0.894683	0.047827005	0.894683	362.5882	0	19.382843						378	10	3	NaN	NaN	NaN	0.089764	1	15357	15357		37.302	11.551	1	91519			23245	1269	13426	13807	18485	18485					-0.0257202532525298
RYPNLDFGW	9	Unmodified						0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.282723	1166.55089	1.3129	0.00076709	4.6643	0.0027253	5.9772	0.0034924	584.2857006893232	27.277	0.2172	27.267	27.122	27.339	-0.010126	1203	88	0.8965218	0.053331077	0.89500237	363.3334		21.613495	0.0066285	-1.5681E-05	0.00015968	NaN	37.302	413	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88032			23246	1269	13426	13807							-0.0257202532525298
RYPNRFKLW	9	Unmodified	_RYPNRFKLW_					0	0	0		ENST00000497655.1_1_1:202932056-202932895:-|nuORF;ENSG00000159348|ENST00000367249|CYB5R1	ENST00000497655.1_1_1:202932056-202932895:-|nuORF	ENST00000497655.1_1_1:202932056-202932895:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.24012994919997	3	427.24013	1278.69856	1.8466	0.00078894	-1.6988	-0.0007258	0.14779	6.314E-05	427.2396838649556	19.708	0.3604	19.708	19.612	19.972	0	1410	61	0.76917666	0.03706175	0.76917666	467.10297	0	22.506714						643	16	5	NaN	NaN	NaN	0.041983	1	18401	18401		50.315	30.979	1	147120			23247	4022	13427	13808	18486	18486					0.07035910999411499
RYPNRRCILRN	11	Unmodified	_RYPNRRCILRN_					0	0	0			REV__ENST00000490981.1_1_3:12545028-12546775:+|nuORF	REV__ENST00000490981.1_1_3:12545028-12546775:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.6053659739333	3	487.605366	1459.79427	1.5779	0.0007694	-2.1407	-0.0010438	-0.56274	-0.0002744	487.93668000704486	19.635	0.1204	19.621	19.549	19.669	-0.014141	1350	43	0.80618626	0.025878608	0.8046668	488.9294	0	15.694672						98	6	2	NaN	NaN	NaN	0.73455	1	19443	19443		2.0359	0.18565	1	8969.4	+		23248	10099	13428	13809	18487	18487					0.08276315848002014
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.20726600499995	3	441.207266	1320.59997	1.736	0.00076593	-1.9068	-0.00084131	-0.17084	-7.5376E-05	441.5413225892883	13.661	0.14406	13.661	13.541	13.685	0	1431	37	0.75620437	0.022246659	0.75620437	459.0697	0	13.505341						164	7	3	NaN	NaN	NaN	0.036001	1	19115	19115		57.081	42.632	1	28826			23249	2445	13429	13810	18488	18488					-0.04750737036306418
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.20726600499995	3	441.207266	1320.59997	1.2474	0.00055035	-2.0207	-0.00089157	-0.77337	-0.00034122	441.20611220034004	14.093	0.071994	14.082	14.034	14.106	-0.010672	1431	31	0.75620437	0.018538952	0.7546849	459.0697	0	11.254425						55	4	2	NaN	NaN	NaN	0.13615	1	18262	18262		41.017	26.057	1	7925.7			23250	2445	13429	13810	18489	18489					-0.04750737036306418
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.20726600499995	3	441.207266	1320.59997	0.92724	0.0004091	0.7588	0.00033479	1.686	0.00074389	441.2079505605681	14.548	0.19166	14.537	14.465	14.657	-0.011218	1431	34	0.75620437	0.020393908	0.7546849	459.06967	0	12.380554						137	9	2	NaN	NaN	NaN	0.48915	1	18263	18263		19.904	14.206	1	15742			23251	2445	13429	13810	18490	18490					-0.04750737036306418
RYPNSLPAL	9	Unmodified	_RYPNSLPAL_					0	0	0		nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	nc|ENSG00000135315|Q5TB80-2|CEP162	nc|ENSG00000135315|Q5TB80-2|CEP162	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7876412478	2	515.787641	1029.56073	1.9947	0.0010289	-2.2403	-0.0011555	-0.24558	-0.00012667	515.7866371114841	21.705	0.14454	21.705	21.657	21.802	0	1278	70	0.85049206	0.042420685	0.85049206	345.21436	0	17.218536						255	7	3	NaN	NaN	NaN	0.35794	1	9765	9765		15.463	1.0377	1	30426			23252	2928	13430	13811	18491	18491					0.04713162680127425
RYPPLLGLVAH	11	Unmodified	_RYPPLLGLVAH_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.5801521959	3	412.580152	1234.71863	1.4984	0.00061822	-10.543	-0.0043496	-9.0441	-0.0037314	412.5768151731244	23.706	0.21692	23.693	23.596	23.813	-0.013048	1413	70	0.7673241	0.04263717	0.76580465	466.15503	0	25.902405						311	10	3	NaN	NaN	NaN	0.64343	1	16674	16674		7.8039	0	1	36514	+		23253	8323	13431	13812	18492	18492					0.11065661939346683
RYPQDYQFYI	10	Unmodified	_RYPQDYQFYI_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.83277703295	2	696.832777	1391.651	1.3606	0.00094809	-0.18866	-0.00013146	1.1719	0.00081662	696.8333272032178	25.322	0.14475	25.31	25.165	25.31	-0.012011	1092	58	0.9644182	0.03478682	0.96289873	390.11014	0	14.071381						132	7	2	NaN	NaN	NaN	0.47445	1	19061	19061		20.513	12.223	1	17324			23254	2437	13432	13813	18493	18493					-0.02915832782105099
RYPQDYQFYI	10	Unmodified	_RYPQDYQFYI_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.83277703295	2	696.832777	1391.651	1.4402	0.0010036	-0.033634	-2.3437E-05	1.4066	0.00098016	696.8329253377759	25.394	0.12063	25.382	25.358	25.479	-0.012011	1089	76	0.96624947	0.045752406	0.96473	390.8509	0	18.506989						176	6	2	NaN	NaN	NaN	0.28195	1	19062	19062		28.495	18.135	1	21819			23255	2437	13432	13813	18494	18494					-0.02915832782105099
RYPQSIFSTF	10	Unmodified	_RYPQSIFSTF_					0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.316762828	2	623.316763	1244.61897	1.8692	0.0011651	-1.7389	-0.0010839	0.13032	8.123E-05	623.3153065305524	26.481	0.36204	26.481	26.384	26.746	0	1155	79	0.92591566	0.047708333	0.92591566	374.97073	0	19.320587						479	16	3	NaN	NaN	NaN	0.28676	1	17629	17629		28.296	10.062	1	127880			23256	2835	13433	13814	18495	18495					0.006447995347571123
RYPQSIFSTF	10	Unmodified						0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.316763	1244.61897	0.95061	0.00059253	-1.4592	-0.00090957	-0.50864	-0.00031704	623.8178631764324	26.553	0.33783	26.542	26.421	26.759	-0.010645	1155	79	0.92591566	0.047703207	0.9243962	374.97073		19.318512	0.030725	0.00017869	-0.00075972	NaN	28.296	505	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102800			23257	2835	13433	13814							0.006447995347571123
RYPSATILS	9	Unmodified	_RYPSATILS_					0	0	0			REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5520216138001	1	1007.55202	1006.54475	1.1296	0.0011382	-0.61784	-0.0006225	0.5118	0.00051566	1007.5512101209915	20.839	0.16856	20.825	20.728	20.897	-0.014086	225	103	1.4855686	0.06031382	1.4840492	301.59082	0	12.244537						323	8	2	NaN	NaN	NaN	0.18779	1	8674	8674		26.115	6.9514	1	28193	+		23258	12347	13434	13815	18496	18496					0.04173456443231771
RYPSATILS	9	Unmodified						0	0	0			REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1007.55202	1006.54475	1.4561	0.0014671	0.0049477	4.9851E-06	1.4611	0.0014721	1007.5518800408602	20.814	0.16874	20.814	20.742	20.911	0	225	100	1.4855686	0.058542967	1.4855686	301.59082		11.88504	-0.0051108	0.00031823	0.00075972	NaN	26.115	244	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24630	+		23259	12347	13434	13815							0.04173456443231771
RYPSATILS	9	Unmodified						0	0	0			REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	REV__ENST00000474482.1_1_7:100660763-100660886:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1007.55202	1006.54475	1.1296	0.0011382	-0.61784	-0.0006225	0.5118	0.00051566	1007.5512101209915	20.839	0.16856	20.825	20.728	20.897	-0.014086	225	103	1.4855686	0.06031382	1.4840492	301.59082		12.244537	0.0051108	-0.00030925	-0.00075972	NaN	26.115	323	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28193	+		23260	12347	13434	13815							0.04173456443231771
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.24376296163337	3	416.243763	1245.70946	2.3084	0.00096084	-1.3092	-0.00054493	0.99922	0.00041592	416.2433982111311	19.084	0.69592	19.084	18.772	19.468	0	1422	61	0.7617651	0.03706175	0.7617651	462.7328	0	22.513092						714	30	2	NaN	NaN	NaN	0.027734	1	17663	17663		62.076	22.736	1	741250			23261	1176	13435	13816	18497	18497					0.09643313373703677
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.24376296163337	3	416.243763	1245.70946	0.82519	0.00034348	-1.2724	-0.00052964	-0.44724	-0.00018616	416.2431344196864	20.815	0.12035	20.801	20.776	20.897	-0.014088	1422	40	0.7617651	0.024094045	0.7602457	462.7328	0	14.635895						117	6	2	NaN	NaN	NaN	0.19268	1	16921	16921		25.801	7.5675	1	80589			23262	1176	13435	13816	18498	18498					0.09643313373703677
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.24376296163337	3	416.243763	1245.70946	1.2829	0.000534	-0.85888	-0.0003575	0.42402	0.0001765	416.57763631687914	20.453	0.16861	20.439	20.295	20.463	-0.014143	1425	40	0.7599118	0.024094045	0.75839233	461.60693	0	14.635864						215	8	3	NaN	NaN	NaN	0.11323	1	16923	16923		33.907	15.349	1	113550			23263	1176	13435	13816	18499	18499					0.09643313373703677
RYPSLWRRL	9	Unmodified						0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	416.243763	1245.70946	1.6287	0.00067793	-4.1565	-0.0017301	-2.5278	-0.0010522	416.2421146725998	20.045	0.12016	20.045	19.997	20.117	0	1425	28	0.7599118	0.016680479	0.7599118	461.60696		10.132538	-0.19728	-0.0034401	0.00075972	NaN	33.907	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8884.2			23264	1176	13435	13816							0.09643313373703677
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3061981417001	2	569.306198	1136.59784	1.4696	0.00083665	-4.7694	-0.0027152	-3.2998	-0.0018786	569.3025638176011	24.695	0.4101	24.682	24.538	24.948	-0.012392	1215	97	0.8891654	0.058844924	0.88764596	360.46307	0	23.855408						815	18	3	NaN	NaN	NaN	0.030696	1	13875	13875		58.2	22.903	1	272100			23265	2608	13436	13817	18500	18500					0.035008342259061465
RYPSNLQLF	9	Unmodified						0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.306198	1136.59784	1.9203	0.0010932	-7.346	-0.0041821	-5.4257	-0.0030889	569.3017638953861	24.647	0.43421	24.647	24.526	24.96	0	1215	94	0.8891654	0.0570091	0.8891654	360.46307		23.111206	-0.017833	-0.001584	0.00075972	NaN	58.2	700	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265080			23266	2608	13436	13817							0.035008342259061465
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2796490402	2	504.279649	1006.54475	2.015	0.0010161	-0.49202	-0.00024812	1.523	0.00076802	504.27950993822856	20.814	0.31323	20.814	20.67	20.983	0	1308	88	0.83204526	0.05354488	0.83204526	337.82867	0	21.740387						473	14	2	NaN	NaN	NaN	0.011693	1	8850	8850		87.778	17.996	1	918550			23267	3846	13437	13818	18501	18501					0.04173456443231771
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.2796490402	2	504.279649	1006.54475	1.6253	0.0008196	-0.36068	-0.00018188	1.2646	0.00063772	504.27956813040976	20.839	0.43358	20.825	20.608	21.041	-0.014086	1308	67	0.83204526	0.04060924	0.8305259	337.82867	0	16.48825						557	19	2	NaN	NaN	NaN	0.0028258	1	8675	8675		108.53	29.332	1	944160			23268	3846	13437	13818	18502	18502					0.04173456443231771
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3324128922001	2	613.332413	1224.65027	0.76521	0.00046933	-4.4137	-0.0027071	-3.6485	-0.0022378	613.8317957523959	27.181	0.096502	27.181	27.181	27.277	0	1167	46	0.91857195	0.027543366	0.91857195	372.06326	0	11.156311						80	5	2	NaN	NaN	NaN	0.70002	1	17098	17098		7.1304	0	1	13354			23269	3846	13438	13819	18503	18503					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3324128922001	2	613.332413	1224.65027	0.74851	0.00045908	-0.045656	-2.8002E-05	0.70285	0.00043108	613.3337972719232	27.109	0.048285	27.109	27.084	27.133	0	1164	61	0.9204082	0.03669876	0.9204082	372.807	0	14.864655						59	3	2	NaN	NaN	NaN	0.6751	1	17101	17101		16.226	7.9483	1	13134			23270	3846	13438	13819	18504	18504					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.3324128922001	2	613.332413	1224.65027	1.9808	0.0012149	-1.1951	-0.00073298	0.78569	0.00048189	613.3313833858368	26.408	0.31375	26.408	26.312	26.625	0	1155	121	0.92591566	0.07346094	0.92591566	375.03778	0	29.755005						939	14	5	NaN	NaN	NaN	0.029867	1	17102	17102		80.442	29.611	1	1086700			23271	3846	13438	13819	18505	18505					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3324128922001	2	613.332413	1224.65027	0.59436	0.00036454	-5.0975	-0.0031265	-4.5032	-0.0027619	613.3301588390184	27.325	0.19307	27.315	27.291	27.484	-0.010124	1158	58	0.92408	0.034869432	0.9225606	374.29428	0	14.123688						181	9	3	NaN	NaN	NaN	0.32023	1	16415	16415		26.96	11.497	1	30056			23272	3846	13438	13819	18506	18506					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.3324128922001	2	613.332413	1224.65027	1.766	0.0010831	-1.5283	-0.00093738	0.23766	0.00014576	613.3312133885532	26.432	0.33782	26.421	26.324	26.662	-0.011137	1152	118	0.92775106	0.071620524	0.9262317	375.78122	0	29.009583						852	15	4	NaN	NaN	NaN	0.0035853	1	16417	16417		95.291	39.332	1	987200			23273	3846	13438	13819	18507	18507					0.04693372568840459
RYPVGRFPSL	10	Unmodified	_RYPVGRFPSL_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.8926187769667	3	397.892619	1190.65603	1.0981	0.00043694	-3.2544	-0.0012949	-2.1563	-0.00085797	397.8912556540149	20.646	0.072237	20.646	20.622	20.694	0	1446	31	0.7469324	0.018550932	0.7469324	453.95218	0	11.274475						47	4	2	NaN	NaN	NaN	0.66626	1	16173	16173		11.561	8.8571	1	3712.3			23274	3349	13439	13820	18508	18508					0.06832515871178657
RYPVGRFPSL	10	Unmodified	_RYPVGRFPSL_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.3352899321501	2	596.33529	1190.65603	0.56747	0.0003384	-1.4475	-0.00086322	-0.88007	-0.00052482	596.3338559141658	20.839	0.19269	20.825	20.728	20.921	-0.014086	1164	49	0.9204082	0.029384315	0.91888875	372.92563	0	11.905792						187	9	2	NaN	NaN	NaN	0.50283	1	15561	15561		19.336	7.2877	1	21383			23275	3349	13439	13820	18509	18509					0.06832515871178657
RYPVGRFPSL	10	Unmodified						0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	596.33529	1190.65603	1.0109	0.00060283	-3.1889	-0.0019016	-2.178	-0.0012988	596.3329733726873	20.646	0.19278	20.646	20.597	20.79	0	1167	52	0.91857195	0.03122592	0.91857195	372.18164		12.651947	-0.089471	-0.0013725	-0.00015839	NaN	19.336	191	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21087			23276	3349	13439	13820							0.06832515871178657
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.53309055296666	3	399.533091	1195.57744	1.0886	0.00043492	-1.4664	-0.00058588	-0.37784	-0.00015096	399.53240938056695	21.272	0.072247	21.272	21.272	21.344	0	1443	37	0.7487872	0.022256374	0.7487872	455.058	0	13.525757						62	4	2	NaN	NaN	NaN	0.47587	1	16328	16328		6.4299	3.9688	1	6245			23277	4974	13440	13821	18510	18510					-0.012523364339131149
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7959975961501	2	598.795998	1195.57744	1.2259	0.00073406	-1.394	-0.00083472	-0.1681	-0.00010066	598.7952165847594	21.272	0.21661	21.272	21.2	21.416	0	1182	73	0.9093879	0.044100344	0.9093879	368.44308	0	17.867493						287	10	4	NaN	NaN	NaN	0.27608	1	16329	16329		20.449	4.986	1	43537			23278	4974	13440	13821	18511	18511					-0.012523364339131149
RYQALFHDF	9	Unmodified						0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.795998	1195.57744	1.0979	0.00065741	-0.14509	-8.6877E-05	0.9528	0.00057053	598.7967398171171	21.489	0.14459	21.475	21.402	21.547	-0.014006	1182	55	0.9093879	0.033071637	0.90786844	368.44308		13.399139	0.10135	0.001005	-0.00075972	NaN	20.449	145	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27709			23279	4974	13440	13821							-0.012523364339131149
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.317097179	2	584.317097	1166.61964	2.122	0.0012399	-2.8642	-0.0016736	-0.74221	-0.00043368	584.3149367154599	19.972	0.16824	19.972	19.948	20.117	0	1209	64	0.892844	0.038606524	0.892844	361.84268	0	15.646088						256	8	4	NaN	NaN	NaN	0.077759	1	15372	15372		39.039	21.069	1	45188			23280	1197	13441	13822	18512	18512					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.317097179	2	584.317097	1166.61964	1.5681	0.00091626	-1.4208	-0.0008302	0.14728	8.6058E-05	584.3166016873907	20.092	0.24069	20.078	20.006	20.246	-0.014141	1209	64	0.892844	0.038610697	0.8913246	361.84268	0	15.647766						255	11	3	NaN	NaN	NaN	0.032409	1	14839	14839		55.958	30.157	1	42785			23281	1197	13441	13822	18513	18513					0.04299638974453046
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.8091049714001	2	572.809105	1143.60366	1.9466	0.001115	-1.4175	-0.00081197	0.52908	0.00030306	572.8085182255495	20.285	0.38472	20.285	20.237	20.622	0	1239	94	0.87444305	0.05707693	0.87444305	354.46866	0	23.136963						487	17	5	NaN	NaN	NaN	0.017791	1	14590	14590		74.794	18.836	1	286050			23282	386	13442	13823	18514	18514					0.03759932737557392
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8091049714001	2	572.809105	1143.60366	1.5517	0.00088883	-0.7596	-0.00043511	0.7921	0.00045372	572.808885154221	20.357	0.31295	20.343	20.295	20.608	-0.014141	1242	100	0.87260187	0.06075275	0.8710824	353.72232	0	24.627045						562	14	5	NaN	NaN	NaN	0.0098181	1	14110	14110		92.758	31.774	1	301380			23283	386	13442	13823	18515	18515					0.03759932737557392
RYQEALSEL	9	Unmodified	_RYQEALSEL_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7852955241	2	554.785296	1107.55604	1.503	0.00083383	-1.073	-0.00059531	0.42992	0.00023852	554.7846483630485	19.876	0.14427	19.876	19.852	19.997	0	1227	52	0.88180584	0.03129351	0.88180584	357.59183	0	12.690216						187	7	3	NaN	NaN	NaN	0.064504	1	13177	13177		40.957	17.839	1	28063			23284	3439	13443	13824	18516	18516					0.006562337466903045
RYQEALSEL	9	Unmodified	_RYQEALSEL_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7852955241	2	554.785296	1107.55604	1.4277	0.00079207	-1.3661	-0.00075791	0.061573	3.416E-05	554.7845687366308	19.9	0.19255	19.885	19.837	20.03	-0.014141	1227	52	0.88180584	0.031290054	0.8802864	357.59186	0	12.688843						147	9	2	NaN	NaN	NaN	0.041983	1	12802	12802		50.315	17.862	1	30161			23285	3439	13443	13824	18517	18517					0.006562337466903045
RYQEDVQQL	9	Unmodified	_RYQEDVQQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.79365187245	2	589.793652	1177.57275	1.6864	0.00099461	0.068758	4.0553E-05	1.7551	0.0010352	589.7922050880272	16.395	0.1199	16.382	16.358	16.478	-0.012993	1212	46	0.8910048	0.02759695	0.88948536	361.05807	0	11.183014						168	6	4	NaN	NaN	NaN	0.084037	1	15172	15172		38.131	12.33	1	11883			23286	2489	13444	13825	18518	18518					-0.008932653673355162
RYQEMIQKL	9	Unmodified	_RYQEMIQKL_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8264404448	2	604.82644	1207.63833	1.6789	0.0010154	-1.5477	-0.00093611	0.13116	7.9327E-05	604.8252414160409	17.621	0.11988	17.621	17.573	17.693	0	1158	40	0.92408	0.023863196	0.92408	374.35303	0	9.667175						145	6	3	NaN	NaN	NaN	0.054111	1	16677	16677		45.165	9.8684	1	20381			23287	3742	13445	13826	18519	18519					0.04281432554012099
RYQEMIQKL	9	Unmodified	_RYQEMIQKL_					0	0	0		ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	ENST00000502495.1_1_4:129805634-129873545:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.8264404448	2	604.82644	1207.63833	1.4029	0.00084852	-1.1559	-0.00069911	0.24702	0.00014941	604.8257781044459	17.762	0.16786	17.748	17.7	17.868	-0.013786	1158	40	0.92408	0.02386576	0.9225606	374.35303	0	9.668243						202	8	3	NaN	NaN	NaN	0.059222	1	16006	16006		42.995	12.385	1	22375			23288	3742	13445	13826	18520	18520					0.04281432554012099
RYQEVDRRF	9	Unmodified	_RYQEVDRRF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.55466572689994	3	423.554666	1267.64217	0.99595	0.00042184	-1.429	-0.00060524	-0.43301	-0.0001834	423.5535619101098	12.868	0.24021	12.868	12.82	13.06	0	1452	40	0.74322224	0.024117589	0.74322224	451.38342	0	14.6474						200	11	2	NaN	NaN	NaN	0.23499	1	18186	18186		23.086	11.347	1	54824			23289	953	13446	13827	18521	18521					0.01905238372069107
RYQEVDRRF	9	Unmodified	_RYQEVDRRF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.55466572689994	3	423.554666	1267.64217	0.84826	0.00035928	-0.56509	-0.00023935	0.28316	0.00011994	423.5543030765197	13.134	0.23962	13.124	12.957	13.196	-0.00947	1452	37	0.74322224	0.022263587	0.7417028	451.38342	0	13.521393						191	11	2	NaN	NaN	NaN	0.17328	1	17373	17373		27.046	11.261	1	37321			23290	953	13446	13827	18522	18522					0.01905238372069107
RYQEVIQEL	9	Unmodified	_RYQEVIQEL_					0	0	0		ENST00000554557.5_1_14:68248216-68272009:-|nuORF;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.31422013905	2	589.31422	1176.61389	1.4712	0.00086701	-1.5012	-0.00088466	-0.029943	-1.7646E-05	589.3132996268246	21.272	0.07222	21.272	21.248	21.32	0	1194	61	0.902037	0.036750257	0.902037	365.53207	0	14.892303						157	4	3	NaN	NaN	NaN	0.052553	1	15710	15710		45.827	9.5917	1	31542			23291	787	13447	13828	18523	18523					0.032644956721242124
RYQEVIQEL	9	Unmodified	_RYQEVIQEL_					0	0	0		ENST00000554557.5_1_14:68248216-68272009:-|nuORF;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	ENST00000554557.5_1_14:68248216-68272009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.31422013905	2	589.31422	1176.61389	1.1093	0.00065373	-1.5531	-0.00091525	-0.44377	-0.00026152	589.3140613975587	21.296	0.09621	21.282	21.234	21.33	-0.014006	1191	70	0.90387505	0.042255938	0.9023556	366.2769	0	17.123352						160	5	3	NaN	NaN	NaN	0.040769	1	15139	15139		50.831	10.677	1	32232			23292	787	13447	13828	18524	18524					0.032644956721242124
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.7956632451501	2	601.795663	1201.57677	1.7966	0.0010812	-0.71728	-0.00043166	1.0793	0.00064955	601.7952737578629	24.96	0.16894	24.96	24.912	25.081	0	1161	115	0.9222442	0.06977278	0.9222442	373.6306	0	28.267181						454	8	4	NaN	NaN	NaN	8.7755E-05	1	16521	16521		123.66	0	1	402620			23293	5695	13448	13829	18525	18525					-0.01595175873626431
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7956632451501	2	601.795663	1201.57677	1.6315	0.00098181	-1.5058	-0.00090618	0.12566	7.5624E-05	601.7950463023858	24.984	0.19301	24.972	24.924	25.117	-0.012392	1161	106	0.9222442	0.06426096	0.92072475	373.6306	0	26.03418						529	9	4	NaN	NaN	NaN	2.9468E-07	1	15873	15873		130.62	0	1	405110			23294	5695	13448	13829	18526	18526					-0.01595175873626431
RYQFSVSSL	9	Unmodified	_RYQFSVSSL_					0	0	0			REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7825558699001	2	543.782556	1085.55056	1.5553	0.00084574	-8.1281	-0.0044199	-6.5728	-0.0035742	543.7768621513206	22.982	0.16874	22.969	22.896	23.065	-0.01354	1251	55	0.8670771	0.0331468	0.8655577	351.70663	0	13.445099						170	8	4	NaN	NaN	NaN	0.2961	1	11887	11887		19.164	0	1	17212	+		23295	12436	13449	13830	18527	18527					0.01120554954900399
RYQFSVSSL	9	Unmodified						0	0	0			REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.782556	1085.55056	1.8089	0.00098366	-9.3536	-0.0050863	-7.5447	-0.0041027	543.7774401593601	22.959	0.12058	22.959	22.863	22.983	0	1248	67	0.8689189	0.040499628	0.8689189	352.4537		16.427582	-0.0049323	-0.00061378	0.0016806	NaN	19.164	143	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15144	+		23296	12436	13449	13830							0.01120554954900399
RYQFSVSSL	9	Unmodified						0	0	0			REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	REV__ENST00000488019.1_1_7:104941989-104942193:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.782556	1085.55056	1.5553	0.00084574	-8.1281	-0.0044199	-6.5728	-0.0035742	543.7768621513206	22.982	0.16874	22.969	22.896	23.065	-0.01354	1251	55	0.8670771	0.0331468	0.8655577	351.70663		13.445099	0.0049323	0.00071905	-0.0016806	NaN	19.164	170	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17212	+		23297	12436	13449	13830							0.01120554954900399
RYQFTPAFL	9	Unmodified	_RYQFTPAFL_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.803291312	2	571.803291	1141.59203	1.6245	0.0009289	-2.2174	-0.0012679	-0.59291	-0.00033903	571.8022284502551	26.698	0.1453	26.698	26.65	26.795	0	1179	55	0.9112251	0.03306806	0.9112251	369.38657	0	13.404938						190	7	4	NaN	NaN	NaN	0.16939	1	14526	14526		27.296	5.4612	1	34040			23298	1711;5006	13450	13831	18528	18528					0.026897357142161127
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.3061981417001	2	563.306198	1124.59784	2.2434	0.0012637	-2.6479	-0.0014916	-0.40444	-0.00022782	563.3050239831945	23.224	0.096451	23.224	23.2	23.296	0	1224	67	0.883646	0.040473342	0.883646	358.27133	0	16.40979						201	5	3	NaN	NaN	NaN	0.14301	1	13875	13875		29.598	4.6373	1	45942			23299	1062	13451	13832	18529	18529					0.0405283422589946
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.3061981417001	2	563.306198	1124.59784	1.7884	0.0010074	-2.7736	-0.0015624	-0.98522	-0.00055498	563.3060481907927	23.272	0.19302	23.258	23.234	23.427	-0.013294	1224	67	0.883646	0.040473342	0.88212657	358.27133	0	16.40979						285	9	3	NaN	NaN	NaN	0.29681	1	13447	13447		19.118	2.7017	1	58817			23300	1062	13451	13832	18530	18530					0.0405283422589946
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000273983|ENST00000614378|H3C8;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000132475|ENST00000254810|H3-3B	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.316762828	2	569.316763	1136.61897	1.5573	0.00088661	-2.3056	-0.0013126	-0.74825	-0.00042599	569.3162126550811	14.501	0.19186	14.501	14.429	14.621	0	1164	64	0.9204082	0.03857732	0.9204082	373.12863	0	15.639069						213	9	3	NaN	NaN	NaN	0.021751	1	14349	14349		69.782	26.787	1	37410			23301	2766	13452	13833	18531	18531					0.056127995347424076
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000273983|ENST00000614378|H3C8;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000132475|ENST00000254810|H3-3B	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.316762828	2	569.316763	1136.61897	0.9497	0.00054068	-0.25678	-0.00014619	0.69292	0.00039449	569.316892171253	14.716	0.23986	14.704	14.608	14.848	-0.011738	1167	55	0.91857195	0.033064544	0.9170525	372.38425	0	13.404175						251	11	3	NaN	NaN	NaN	0.070055	1	13879	13879		40.154	19.64	1	33415			23302	2766	13452	13833	18532	18532					0.056127995347424076
RYQNIWNINL	10	Unmodified	_RYQNIWNINL_					0	0	0		ENST00000489654.1_1_7:142960606-142961286:+|nuORF;ENST00000473649.1_1_7:142960606-142961786:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000489654.1_1_7:142960606-142961286:+|nuORF	ENST00000489654.1_1_7:142960606-142961286:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3542109668001	2	667.354211	1332.69387	1.3319	0.00088886	-2.0267	-0.0013526	-0.69482	-0.00046369	667.3533767448168	27.566	0.14482	27.557	27.508	27.653	-0.009552	1101	40	0.95892316	0.02381432	0.9574037	388.05618	0	9.6371765						137	7	3	NaN	NaN	NaN	0.60686	1	18435	18435		14.425	3.2547	1	11672			23303	5703	13453	13834	18533	18533					0.0408298206600648
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3193139044499	2	672.319314	1342.62407	1.1271	0.00075775	-1.6404	-0.0011029	-0.51337	-0.00034515	672.3187675315271	20.622	0.21685	20.622	20.597	20.814	0	1107	43	0.9552588	0.025655925	0.9552588	386.54395	0	10.381592						139	10	2	NaN	NaN	NaN	0.33513	1	19452	19452		23.086	11.347	1	11705			23304	284	13454	13835	18534	18534					-0.03353219874293245
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.54863475849993	3	448.548635	1342.62407	1.4923	0.00066937	-1.7163	-0.00076986	-0.22402	-0.00010048	448.54802593358914	20.069	0.3124	20.069	20.021	20.333	0	1494	133	0.7172283	0.08165985	0.7172283	435.33456	0	49.56494						1156	14	5	NaN	NaN	NaN	0.022117	1	19453	19453		69.32	47.469	1	216090			23305	284	13454	13835	18535	18535					-0.03353219874293245
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3193139044499	2	672.319314	1342.62407	1.9466	0.0013087	-1.3553	-0.00091119	0.59127	0.00039752	672.3184957761938	20.069	0.50468	20.069	19.972	20.477	0	1101	58	0.95892316	0.03480935	0.95892316	388.0267	0	14.085541						913	22	5	NaN	NaN	NaN	0.032021	1	19454	19454		63.731	36.434	1	437220			23306	284	13454	13835	18536	18536					-0.03353219874293245
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.54863475849993	3	448.548635	1342.62407	1.4736	0.00066097	-2.2752	-0.0010205	-0.80162	-0.00035956	448.54762834978163	20.333	0.40925	20.319	20.174	20.584	-0.014141	1494	136	0.7172283	0.08351123	0.71570885	435.3346	0	50.68866						1302	18	3	NaN	NaN	NaN	0.022185	1	18580	18580		69.233	51.651	1	205620			23307	284	13454	13835	18537	18537					-0.03353219874293245
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3193139044499	2	672.319314	1342.62407	1.7225	0.0011581	-2.3171	-0.0015578	-0.59459	-0.00039975	672.3180130146162	20.333	0.60208	20.319	20.126	20.728	-0.014141	1104	58	0.9570911	0.034813106	0.95557165	387.28537	0	14.087067						1126	26	5	NaN	NaN	NaN	0.10206	1	18581	18581		47.482	31.256	1	439250			23308	284	13454	13835	18538	18538					-0.03353219874293245
RYQQWMERF	9	Unmodified						0	0	0		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.319314	1342.62407	1.1473	0.00077133	-2.0957	-0.001409	-0.94842	-0.00063764	672.3181870854975	20.815	0.048061	20.801	20.776	20.825	-0.014088	1104	31	0.9570911	0.018321693	0.95557165	387.28537		7.4138184	0.089491	-0.00031504	0.00015641	NaN	23.086	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5169.1			23309	284	13454	13835							-0.03353219874293245
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(62)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.88027296586654	3	453.880273	1358.61899	1.6661	0.00075622	-2.4596	-0.0011164	-0.79351	-0.00036016	453.87899969594906	17.213	0.28778	17.213	17.165	17.453	0	1500	133	0.71351165	0.081677616	0.71351165	433.02682	0	49.569733						1256	13	4	NaN	NaN	NaN	0.028117	1	19655	19655		61.575	50.752	1	254010			23310	284	13454	13836	18539	18539		24			-0.045975237369248134
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(61)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.3167712154999	2	680.316771	1358.61899	2.135	0.0014524	-1.8777	-0.0012774	0.25724	0.000175	680.3157012806344	17.213	0.28778	17.213	17.165	17.453	0	1107	55	0.9552588	0.032986104	0.9552588	386.49756	0	13.346191						573	13	5	NaN	NaN	NaN	0.028404	1	19658	19658		61.199	31.163	1	198920			23311	284	13454	13836	18540	18540		24			-0.045975237369248134
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(49)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.88027296586654	3	453.880273	1358.61899	1.8637	0.00084587	-1.5392	-0.00069862	0.32443	0.00014725	453.87939920762324	17.402	0.28801	17.388	17.292	17.58	-0.013569	1497	136	0.71537006	0.08353841	0.7138506	434.1547	0	50.699066						1283	13	4	NaN	NaN	NaN	0.044153	1	18756	18756		49.394	40.39	1	246360			23312	284	13454	13836	18541	18541		24			-0.045975237369248134
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(51)ERF	0	0	1		ENST00000487229.6_1_17:12905763-12906899:-|nuORF;ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	ENST00000487229.6_1_17:12905763-12906899:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3167712154999	2	680.316771	1358.61899	2.0599	0.0014014	-1.5199	-0.001034	0.54004	0.0003674	680.3159424677301	17.426	0.47982	17.412	17.268	17.748	-0.013567	1107	52	0.9552588	0.03115189	0.9537394	386.49756	0	12.604065						828	21	5	NaN	NaN	NaN	0.040769	1	18757	18757		50.831	37.73	1	237990			23313	284	13454	13836	18542	18542		24			-0.045975237369248134
RYQTFLQLL	9	Unmodified	_RYQTFLQLL_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.3374982701001	2	591.337498	1180.66044	1.6567	0.00097967	-1.8061	-0.001068	-0.14945	-8.8375E-05	591.3368165762506	29.884	0.12066	29.884	29.836	29.956	0	1158	61	0.92408	0.03671062	0.92408	374.44968	0	14.875641						200	6	4	NaN	NaN	NaN	0.14787	1	15852	15852		28.896	8.3823	1	36886			23314	2348	13455	13837	18543	18543					0.0773398029409691
RYQTFLQLL	9	Unmodified	_RYQTFLQLL_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.3374982701001	2	591.337498	1180.66044	0.73258	0.0004332	-1.5836	-0.00093644	-0.85102	-0.00050324	591.3367165362918	29.931	0.12064	29.925	29.876	29.997	-0.0064087	1146	67	0.93142134	0.04037732	0.9299019	377.42447	0	16.36145						163	6	3	NaN	NaN	NaN	0.048656	1	15268	15268		47.482	21.681	1	27554			23315	2348	13455	13837	18544	18544					0.0773398029409691
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.9035178142667	3	416.903518	1247.68872	1.1533	0.00048082	-1.4728	-0.00061402	-0.3195	-0.0001332	416.90311852321116	12.532	0.28792	12.532	12.34	12.628	0	1443	46	0.7487872	0.027821898	0.7487872	454.84146	0	16.900116						229	13	3	NaN	NaN	NaN	0.017791	1	17727	17727		67.17	38.874	1	27868			23316	2291	13456	13838	18545	18545					0.0747872299402843
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.9035178142667	3	416.903518	1247.68872	1.6595	0.00069183	-3.1006	-0.0012926	-1.4411	-0.00060081	416.90323605059245	14.045	0.07197	14.034	14.01	14.082	-0.010672	1437	34	0.7524962	0.020398319	0.75097674	457.09445	0	12.390717						59	4	2	NaN	NaN	NaN	0.35794	1	16980	16980		13.949	5.6712	1	4093.8			23317	2291	13456	13838	18546	18546					0.0747872299402843
RYQTLYARF	9	Unmodified	_RYQTLYARF_					0	0	0		ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENSG00000182628|ENST00000330137|SKA2	ENSG00000182628|ENST00000330137|SKA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.3249222111	2	609.324922	1216.63529	1.8683	0.0011384	-1.3459	-0.00082008	0.52242	0.00031832	609.3242016414247	18.556	0.16786	18.556	18.508	18.676	0	1134	55	0.9387595	0.033025324	0.9387595	380.26807	0	13.377747						201	8	4	NaN	NaN	NaN	0.1507	1	16909	16909		28.495	8.0466	1	27434			23318	5272	13457	13839	18547	18547					0.035639254914940466
RYQTLYARF	9	Unmodified	_RYQTLYARF_					0	0	0		ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENSG00000182628|ENST00000330137|SKA2	ENSG00000182628|ENST00000330137|SKA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3249222111	2	609.324922	1216.63529	1.2646	0.00077057	-1.1999	-0.00073114	0.064706	3.9427E-05	609.8262420993832	18.746	0.21601	18.731	18.636	18.852	-0.014059	1134	43	0.9387595	0.02568084	0.93724006	380.26807	0	10.402649						202	10	3	NaN	NaN	NaN	0.077759	1	16234	16234		39.039	18.526	1	24658			23319	5272	13457	13839	18548	18548					0.035639254914940466
RYQTQPVTL	9	Unmodified	_RYQTQPVTL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3036554527501	2	553.303655	1104.59276	1.9728	0.0010916	-3.3274	-0.001841	-1.3546	-0.00074949	553.3027231755625	17.789	0.26378	17.789	17.741	18.005	0	1254	88	0.8652351	0.053394496	0.8652351	350.88364	0	21.653381						619	12	3	NaN	NaN	NaN	0.026469	1	13050	13050		63.731	29.277	1	173720			23320	5694	13458	13840	18549	18549					0.044645303632933064
RYQYFVVDPMA	11	Unmodified	_RYQYFVVDPMA_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;ENST00000477970.1_1_1:44086064-44087671:+|nuORF;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000105426|Q13332-7|PTPRS;ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000153707|P23468-3|PTPRD	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.8370051311001	2	694.837005	1387.65946	1.599	0.001111	3.1546	0.0021919	4.7535	0.0033029	694.8379513462238	25.202	0.14479	25.202	25.178	25.322	0	1095	76	0.9625867	0.045767188	0.9625867	389.3803	0	18.513489						225	7	4	NaN	NaN	NaN	0.67772	1	19959	19959		8.9191	1.9347	1	27905			23321	3392;1537;7964	13459	13841	18550	18550					-0.01886602137119553
RYRLIQLIGD	10	Unmodified	_RYRLIQLIGD_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.2470616230667	3	416.247062	1245.71936	1.6549	0.00068885	-8.8367	-0.0036783	-7.1818	-0.0029894	416.24318216421955	19.516	0.047998	19.516	19.516	19.564	0	1425	34	0.7599118	0.020387232	0.7599118	461.60693	0	12.384216						50	3	2	NaN	NaN	NaN	0.75017	1	17662	17662		4.6175	0.68935	1	10092	+		23322	13160	13460	13842	18551	18551					0.10632456588427885
RYRLIQLIGD	10	Unmodified						0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	416.247062	1245.71936	1.6549	0.00068885	-8.8367	-0.0036783	-7.1818	-0.0029894	416.24318216421955	19.516	0.047998	19.516	19.516	19.564	0	1425	34	0.7599118	0.020387232	0.7599118	461.60693		12.384216	0	0	0	NaN	4.6175	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10092	+		23323	13160	13460	13842							0.10632456588427885
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.8963632397333	3	421.896363	1262.66726	1.8228	0.00076904	-3.3419	-0.0014099	-1.5191	-0.0006409	422.22911853647213	18.892	0.095991	18.892	18.82	18.916	0	1434	37	0.75435036	0.022251546	0.75435036	458.16135	0	13.514648						88	5	2	NaN	NaN	NaN	0.20577	1	18061	18061		16.858	8.402	1	11660			23324	238	13461	13843	18552	18552					0.04643337965308092
RYRSCNTDPC	10	Unmodified	_RYRSCNTDPC_					0	0	0		ENST00000470597.5_1_5:64510471-64595853:-|nuORF;nc|ENSG00000049192|Q9UKP5-2|ADAMTS6;ENSG00000049192|ENST00000381055|ADAMTS6	ENST00000470597.5_1_5:64510471-64595853:-|nuORF	ENST00000470597.5_1_5:64510471-64595853:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.50621828379997	3	405.506218	1213.49683	1.1652	0.00047251	5.1083	0.0020714	6.2735	0.002544	405.8424442238699	30.51	0.12062	30.505	30.48	30.601	-0.0057545	1473	34	0.7302302	0.020422697	0.7287108	443.70575	0	12.409332						107	6	3	NaN	NaN	NaN	0.75966	1	16142	16142		1.6985	0.36732	1	6013			23325	564	13462	13844	18553	18553					-0.10138308810769558
RYRWLSGLLS	10	Unmodified	_RYRWLSGLLS_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.5716567062334	3	417.571657	1249.69314	2.1604	0.00090211	6.6545	0.0027787	8.8149	0.0036808	417.90873013573986	18.125	0.28788	18.125	17.957	18.245	0	1425	37	0.7599118	0.02224183	0.7599118	461.5908	0	13.510284						232	13	3	NaN	NaN	NaN	0.34981	1	17775	17775		25.681	2.3286	1	47620	+		23326	11142	13463	13845	18554	18554					0.0782818741695337
RYRWLSGLLS	10	Unmodified						0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	417.571657	1249.69314	2.1604	0.00090211	6.6545	0.0027787	8.8149	0.0036808	417.90873013573986	18.125	0.28788	18.125	17.957	18.245	0	1425	37	0.7599118	0.02224183	0.7599118	461.5908		13.510284	0	0	0	NaN	25.681	232	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47620	+		23327	11142	13463	13845							0.0782818741695337
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.88753339906657	3	449.887533	1346.64077	1.4693	0.00066103	-2.6751	-0.0012035	-1.2058	-0.00054248	449.8860242785142	23.079	0.14455	23.079	23.031	23.176	0	1401	43	0.77473325	0.025929153	0.77473325	470.22397	0	15.737701						146	7	3	NaN	NaN	NaN	0.048526	1	19500	19500		39.768	25.775	1	14612			23328	474	13464	13846	18555	18555					-0.018683957167013432
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3276618652999	2	674.327662	1346.64077	1.7372	0.0011715	-1.4698	-0.0009911	0.26746	0.00018036	674.3260100754183	23.079	0.16863	23.079	23.031	23.2	0	1107	43	0.9552588	0.025650322	0.9552588	386.5322	0	10.379028						172	8	3	NaN	NaN	NaN	0.076425	1	19501	19501		43.133	18.172	1	19821			23329	474	13464	13846	18556	18556					-0.018683957167013432
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.88753339906657	3	449.887533	1346.64077	1.582	0.00071171	-1.5802	-0.0007109	0.0017881	8.0447E-07	449.88598787323014	23.223	0.096548	23.21	23.138	23.234	-0.013294	1398	34	0.77658504	0.020371795	0.7750656	471.3479	0	12.364655						61	5	2	NaN	NaN	NaN	0.14414	1	18631	18631		22.56	16.627	1	8353			23330	474	13464	13846	18557	18557					-0.018683957167013432
RYSAGWDAKFF	11	Unmodified	_RYSAGWDAKFF_					0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.3276618652999	2	674.327662	1346.64077	1.3146	0.00088647	-0.71547	-0.00048246	0.59913	0.00040401	674.3273985983437	23.248	0.14475	23.234	23.162	23.307	-0.013294	1104	52	0.9570911	0.031145215	0.95557165	387.2736	0	12.6024475						184	7	3	NaN	NaN	NaN	0.16517	1	18632	18632		33.567	6.271	1	19924			23331	474	13464	13846	18558	18558					-0.018683957167013432
RYSAGWDAKFF	11	Unmodified						0	0	0		ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000025423|ENST00000322165|HSD17B6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	449.887533	1346.64077	2.1532	0.0009687	-5.088	-0.002289	-2.9348	-0.0013203	450.22039964427887	23.296	0.048225	23.283	23.258	23.307	-0.013294	1398	40	0.77658504	0.02407837	0.7750656	471.34793		14.61438	0.1016	-0.0020947	0.00016617	NaN	39.768	59	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3504.4			23332	474	13464	13846							-0.018683957167013432
RYSDNWEAI	9	Unmodified	_RYSDNWEAI_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.26726994645	2	577.26727	1152.51999	1.4936	0.00086221	1.91	0.0011026	3.4036	0.0019648	577.2698316723705	20.911	0.21665	20.911	20.862	21.079	0	1239	82	0.87444305	0.04967457	0.87444305	354.43597	0	20.13446						319	10	3	NaN	NaN	NaN	0.14787	1	14878	14878		28.896	17.725	1	35284			23333	5677	13465	13847	18559	18559					-0.050172234301498975
RYSDPTQWTAF	11	Unmodified	_RYSDPTQWTAF_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.32003379845	2	686.320034	1370.62551	1.7022	0.0011683	-2.0288	-0.0013924	-0.32652	-0.00022409	686.3187054945245	24.526	0.21704	24.526	24.478	24.695	0	1158	67	0.92408	0.040364265	0.92408	373.84964	0	16.329956						289	10	4	NaN	NaN	NaN	0.43809	1	19802	19802		20.688	7.5865	1	28425			23334	37	13466	13848	18560	18560					-0.04497307304541209
RYSDPTQWTAF	11	Unmodified	_RYSDPTQWTAF_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;ENSG00000149418|ENST00000278742|ST14	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.32003379845	2	686.320034	1370.62551	1.3647	0.00093662	-1.688	-0.0011585	-0.32326	-0.00022186	686.3188589064728	24.55	0.16888	24.538	24.489	24.658	-0.012394	1158	67	0.92408	0.040364265	0.9225606	373.84964	0	16.329926						248	8	4	NaN	NaN	NaN	0.40068	1	18875	18875		22.026	12.414	1	26953			23335	37	13466	13848	18561	18561					-0.04497307304541209
RYSDSTFTF	9	Unmodified	_RYSDSTFTF_					0	0	0		ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2563709091501	2	562.256371	1122.49819	2.0262	0.0011393	-1.9514	-0.0010972	0.074825	4.2071E-05	562.2556301691111	21.85	0.24089	21.85	21.802	22.043	0	1260	64	0.8615505	0.038702607	0.8615505	349.3207	0	15.6922						231	11	2	NaN	NaN	NaN	0.030696	1	13777	13777		58.2	20.897	1	68510			23336	3757	13467	13849	18562	18562					-0.058160281787195345
RYSDSTFTF	9	Unmodified	_RYSDSTFTF_					0	0	0		ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.2563709091501	2	562.256371	1122.49819	1.4093	0.00079239	-0.3883	-0.00021832	1.021	0.00057407	562.25620360398	21.874	0.28892	21.86	21.764	22.053	-0.013895	1260	88	0.8615505	0.053429186	0.8600311	349.3207	0	21.663147						367	13	3	NaN	NaN	NaN	0.041983	1	13367	13367		50.315	17.862	1	74479			23337	3757	13467	13849	18563	18563					-0.058160281787195345
RYSEFWPTTA	10	Unmodified	_RYSEFWPTTA_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2985700748501	2	629.29857	1256.58259	3.1193	0.001963	-8.7338	-0.0054962	-5.6144	-0.0035332	629.2933670414458	17.306	0.023979	17.292	17.268	17.292	-0.013569	1167	25	0.91857195	0.014690578	0.9170525	371.9579	0	5.9486694						27	2	2	NaN	NaN	NaN	0.77665	1	17157	17157		1.3312	0.15435	1	1588.8	+		23338	10073	13468	13850	18564	18564					-0.03544077361948439
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.25911056335	2	597.259111	1192.50367	1.6504	0.00098572	0.29558	0.00017654	1.946	0.0011623	597.2594419551292	18.94	0.21595	18.94	18.892	19.108	0	1206	61	0.894683	0.0367741	0.894683	362.496	0	14.899658						294	10	4	NaN	NaN	NaN	0.11656	1	16209	16209		33.425	22.255	1	45430			23339	3219	13469	13851	18565	18565					-0.0848834938692562
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.25911056335	2	597.259111	1192.50367	1.1954	0.00071396	0.58581	0.00034988	1.7812	0.0010638	597.259080862254	18.986	0.21623	18.972	18.924	19.14	-0.014059	1203	55	0.8965218	0.03309667	0.89500237	363.24103	0	13.409668						247	10	3	NaN	NaN	NaN	0.23499	1	15595	15595		23.086	7.6231	1	44628			23340	3219	13469	13851	18566	18566					-0.0848834938692562
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant	RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2827230454001	2	542.282723	1082.55089	1.665	0.00090291	-1.3344	-0.00072361	0.33063	0.0001793	542.2823026180909	20.165	0.14414	20.165	20.117	20.261	0	1269	55	0.8560222	0.033171892	0.8560222	347.23456	0	13.4557495						284	7	4	NaN	NaN	NaN	0.19268	1	12100	12100		25.801	11.759	1	55697			23341	4007	13470	13852	18567	18567					0.012919746747684258
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant;RAPGEF6|p.N120Efs*5|1|0.2|ENSG00000158987|chr5:131548184-131548185|-/C|frameshift_variant;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant	RAPGEF6|p.R103Kfs*4|1|0.53|ENSG00000158987|chr5:131562021-131562022|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2827230454001	2	542.282723	1082.55089	1.5468	0.00083882	-0.15013	-8.1411E-05	1.3967	0.00075741	542.2826998890437	20.188	0.16853	20.174	20.126	20.295	-0.014141	1269	61	0.8560222	0.036857605	0.85450274	347.23453	0	14.950836						220	7	3	NaN	NaN	NaN	0.13999	1	11787	11787		30.035	6.9178	1	54600			23342	4007	13470	13852	18568	18568					0.012919746747684258
RYSGVNQSMLF	11	Oxidation (M)	_RYSGVNQSM(Oxidation (M))LF_		RYSGVNQSM(1)LF		RYSGVNQSM(67)LF	0	0	1		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3164368645	2	659.316437	1316.61832	1.5784	0.0010407	-0.86253	-0.00056868	0.71587	0.00047199	659.3165360073707	20.213	0.19229	20.213	20.141	20.333	0	1131	67	0.94059354	0.040333807	0.94059354	380.68625	0	16.32428						360	9	4	NaN	NaN	NaN	0.012182	1	19051	19051		67.17	36.56	1	89586			23343	3929	13471	13853	18569	18569		424			-0.027323631766194012
RYSGVNQSMLF	11	Oxidation (M)	_RYSGVNQSM(Oxidation (M))LF_		RYSGVNQSM(1)LF		RYSGVNQSM(42)LF	0	0	1		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3164368645	2	659.316437	1316.61832	1.6672	0.0010992	-1.9163	-0.0012635	-0.24911	-0.00016424	659.3154751143278	20.237	0.16845	20.222	20.174	20.343	-0.014143	1134	64	0.9387595	0.038506687	0.93724006	379.94397	0	15.584778						399	8	4	NaN	NaN	NaN	0.080647	1	18210	18210		42.061	21.548	1	90464			23344	3929	13471	13853	18570	18570		424			-0.027323631766194012
RYSGVNQSMLF	11	Unmodified	_RYSGVNQSMLF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.31897955345	2	651.31898	1300.62341	1.2594	0.00082026	-1.7698	-0.0011527	-0.51044	-0.00033246	651.3183796725915	22.934	0.19286	22.921	22.872	23.065	-0.01354	1131	64	0.94059354	0.038506687	0.93907416	380.73486	0	15.586792						264	9	4	NaN	NaN	NaN	0.040708	1	17957	17957		52.195	7.5563	1	67740			23345	3929	13471	13854	18571	18571					-0.014880593139878329
RYSHVLAG	8	Unmodified	_RYSHVLAG_					0	0	0			REV__ENSG00000177565|ENST00000457928|TBL1XR1	REV__ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.74577643310005	2	451.745776	901.477	0.83029	0.00037508	-0.70915	-0.00032035	0.12114	5.4725E-05	451.7455023619586	21.055	0.16857	21.055	21.007	21.175	0	1359	34	0.8006399	0.020338774	0.8006399	325.58783	0	8.270935						135	8	3	NaN	NaN	NaN	0.6053	1	6108	6108		24.961	1.1106	1	14273	+		23346	10768	13472	13855	18572	18572					0.022320513030990696
RYSHVLAG	8	Unmodified						0	0	0			REV__ENSG00000177565|ENST00000457928|TBL1XR1	REV__ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	451.745776	901.477	0.83029	0.00037508	-0.70915	-0.00032035	0.12114	5.4725E-05	451.7455023619586	21.055	0.16857	21.055	21.007	21.175	0	1359	34	0.8006399	0.020338774	0.8006399	325.58783		8.270935	-0.065365	-3.7899E-05	-0.00016477	NaN	24.961	135	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14273	+		23347	10768	13472	13855							0.022320513030990696
RYSHVLAG	8	Unmodified						0	0	0			REV__ENSG00000177565|ENST00000457928|TBL1XR1	REV__ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	451.745776	901.477	0.9865	0.00044565	-0.63459	-0.00028667	0.35191	0.00015897	451.7453771555742	21.2	0.14446	21.186	21.114	21.258	-0.014004	1356	40	0.8024889	0.024036646	0.8009695	326.33972		9.774719	0.065365	2.9463E-05	0.00016477	NaN	24.961	136	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13295	+		23348	10768	13472	13855							0.022320513030990696
RYSIAFPLL	9	Unmodified	_RYSIAFPLL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3160345465001	2	540.316035	1078.61752	1.6889	0.00091254	-0.60888	-0.00032899	1.08	0.00058355	540.3157403789808	30.439	0.16893	30.439	30.391	30.56	0	1239	55	0.87444305	0.03313607	0.87444305	354.723	0	13.4418335						286	8	4	NaN	NaN	NaN	0.054111	1	11930	11930		45.165	24.716	1	97064			23349	645	13473	13856	18573	18573					0.08135210236650892
RYSIAFPLL	9	Unmodified	_RYSIAFPLL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.3160345465001	2	540.316035	1078.61752	1.0893	0.00058858	-0.078507	-4.2418E-05	1.0108	0.00054616	540.3157579135747	30.462	0.31371	30.456	30.384	30.698	-0.0057545	1236	61	0.876284	0.03680587	0.8747646	355.4698	0	14.930542						384	14	4	NaN	NaN	NaN	0.13602	1	11627	11627		30.61	8.4838	1	95311			23350	645	13473	13856	18574	18574					0.08135210236650892
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8141903493001	2	562.81419	1123.61383	2.4805	0.001396	-1.7019	-0.00095784	0.77858	0.0004382	562.812548830266	18.436	0.19183	18.436	18.388	18.58	0	1209	52	0.892844	0.031259656	0.892844	362.0045	0	12.674255						251	9	4	NaN	NaN	NaN	0.15381	1	13839	13839		28.296	12.833	1	42183			23351	4502	13474	13857	18575	18575					0.05696540462804478
RYSRAHSES	9	Unmodified	_RYSRAHSES_					0	0	0		ENST00000376811.5_2_9:77676183-77676378:-|nuORF	ENST00000376811.5_2_9:77676183-77676378:-|nuORF	ENST00000376811.5_2_9:77676183-77676378:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.8442162189	3	364.844216	1091.51082	2.0092	0.00073306	-7.7177	-0.0028157	-5.7084	-0.0020827	365.1754342727579	25.708	0.12062	25.708	25.684	25.805	0	1542	52	0.6874725	0.031637847	0.6874725	418.24884	0	19.248047						180	6	4	NaN	NaN	NaN	0.47587	1	12454	12454		6.4299	1.8125	1	16794			23352	6703	13475	13858	18576	18576					-0.031275719958102854
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2343842568	2	510.234384	1018.45422	2.7128	0.0013842	-1.4282	-0.00072871	1.2846	0.00065546	510.23401842359897	18.101	0.35981	18.101	18.053	18.412	0	1308	67	0.83204526	0.04061365	0.83204526	337.7754	0	16.487427						615	16	4	NaN	NaN	NaN	0.030696	1	9302	9302		58.2	27.589	1	249060			23353	4126	13476	13859	18577	18577					-0.054273358766863566
RYSSMAASF	9	Unmodified	_RYSSMAASF_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.2343842568	2	510.234384	1018.45422	2.2441	0.001145	-1.1902	-0.00060726	1.0539	0.00053774	510.2341356089661	18.17	0.38404	18.156	18.06	18.444	-0.01395	1308	67	0.83204526	0.04061365	0.8305259	337.7754	0	16.487427						686	17	4	NaN	NaN	NaN	0.03618	1	9117	9117		52.78	16.193	1	272640			23354	4126	13476	13859	18578	18578					-0.054273358766863566
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(46)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2318415678501	2	518.231842	1034.44913	1.9309	0.0010007	-1.6205	-0.00083978	0.31047	0.00016089	518.2311489646806	14.789	0.36029	14.789	14.693	15.053	0	1329	73	0.81912065	0.044315398	0.81912065	332.46	0	17.98645						632	16	3	NaN	NaN	NaN	0.052553	1	9952	9952		45.827	13.374	1	292480			23355	4126	13476	13860	18579	18579		446			-0.06671639739306556
RYSTQIHSF	9	Unmodified	_RYSTQIHSF_					0	0	0		ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.7856298751001	2	569.78563	1137.55671	1.1782	0.00067135	-2.106	-0.0012	-0.92772	-0.0005286	569.7852441328251	15.196	0.19213	15.184	15.112	15.304	-0.012202	1236	58	0.876284	0.034978867	0.8747646	355.23743	0	14.180084						262	9	2	NaN	NaN	NaN	0.33202	1	13900	13900		16.858	1.0364	1	43092			23356	5198	13477	13861	18580	18580					-0.0065692681357631955
RYSVASFKF	9	Unmodified	_RYSVASFKF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7954662799001	2	552.795466	1103.57638	1.0051	0.0005556	-1.6119	-0.00089103	-0.6068	-0.00033544	552.7946271197633	20.766	0.096418	20.766	20.718	20.814	0	1227	40	0.88180584	0.023925126	0.88180584	357.6077	0	9.702576						134	5	3	NaN	NaN	NaN	0.25424	1	13000	13000		21.85	7.8088	1	16984			23357	4364	13478	13862	18581	18581					0.028734491971817988
RYSVFFQSL	9	Unmodified	_RYSVFFQSL_					0	0	0		ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.8007486230501	2	573.800749	1145.58694	2.1708	0.0012456	0.51134	0.00029341	2.6821	0.001539	573.8009386241391	26.529	0.24137	26.529	26.432	26.674	0	1203	106	0.8965218	0.0643304	0.8965218	363.41113	0	26.076752						633	11	3	NaN	NaN	NaN	1.2827E-11	1	14655	14655		141.69	75.036	1	364840			23358	4247	13479	13863	18582	18582					0.019974318516233325
RYSVFFQSL	9	Unmodified	_RYSVFFQSL_					0	0	0		ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	ENST00000497315.5_1_3:64004227-64005057:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.8007486230501	2	573.800749	1145.58694	1.5149	0.00086923	0.25769	0.00014786	1.7725	0.0010171	573.8011926626587	26.577	0.26542	26.566	26.446	26.711	-0.010645	1200	106	0.89836043	0.06433731	0.896841	364.1564	0	26.07956						765	12	4	NaN	NaN	NaN	0.00065562	1	14171	14171		115.07	56.834	1	399890			23359	4247	13479	13863	18583	18583					0.019974318516233325
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7982059341001	2	563.798206	1125.58186	1.5549	0.00087665	-1.7908	-0.0010097	-0.23592	-0.00013301	563.7970897735698	23.826	0.096439	23.813	23.789	23.886	-0.013048	1230	52	0.8799654	0.031290054	0.878446	356.77527	0	12.68631						158	5	3	NaN	NaN	NaN	0.34922	1	13483	13483		15.822	0.35925	1	27383			23360	2962	13480	13864	18584	18584					0.024091279889944417
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.8429477887499	2	622.842948	1243.67134	1.7141	0.0010676	-2.2848	-0.0014231	-0.5707	-0.00035546	622.8412068666329	22.838	0.1688	22.838	22.79	22.959	0	1140	49	0.93509084	0.029349506	0.93509084	378.68958	0	11.885864						153	8	3	NaN	NaN	NaN	0.16811	1	17620	17620		38.269	21.411	1	18094			23361	471	13481	13865	18585	18585					0.05925382668351631
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.8429477887499	2	622.842948	1243.67134	1.2873	0.00080177	-3.9746	-0.0024755	-2.6873	-0.0016738	622.8388954396632	23.103	0.12051	23.09	23.065	23.186	-0.013294	1149	34	0.92958635	0.020185351	0.9280669	376.4604	0	8.174591						100	6	4	NaN	NaN	NaN	0.38087	1	16876	16876		24.393	9.5394	1	8707.7			23362	471	13481	13865	18586	18586					0.05925382668351631
RYTDIDYQVF	10	Unmodified	_RYTDIDYQVF_					0	0	0		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3169597932499	2	660.31696	1318.61937	1.4627	0.00096585	-3.7718	-0.0024906	-2.3091	-0.0015248	660.3135517771175	24.405	0.19316	24.393	24.32	24.513	-0.012747	1116	82	0.94976085	0.049476504	0.9482414	384.39047	0	20.024323						189	9	4	NaN	NaN	NaN	0.64138	1	18241	18241		14.45	3.2792	1	17642			23363	3410	13482	13866	18587	18587					-0.02719825536087228
RYTDRDFYF	9	Unmodified	_RYTDRDFYF_					0	0	0		nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.7961945614001	2	641.796195	1281.57784	1.5756	0.0010112	-2.0012	-0.0012844	-0.4256	-0.00027315	641.7952249601934	20.646	0.19277	20.646	20.622	20.814	0	1158	49	0.92408	0.02936846	0.92408	374.10892	0	11.889679						236	9	3	NaN	NaN	NaN	0.51576	1	18446	18446		8.962	0.71716	1	26174			23364	8061	13483	13867	18588	18588					-0.05168961504728031
RYTDRDFYF	9	Unmodified	_RYTDRDFYF_					0	0	0		nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.1998885298	3	428.199889	1281.57784	1.0897	0.0004666	-0.21024	-9.0026E-05	0.87945	0.00037658	428.1995576544228	20.646	0.1687	20.646	20.622	20.79	0	1512	34	0.7060759	0.020451546	0.7060759	428.77307	0	12.419434						94	8	2	NaN	NaN	NaN	0.2961	1	18447	18447		13.101	8.8523	1	7180.1			23365	8061	13483	13867	18589	18589					-0.05168961504728031
RYTDRDFYF	9	Unmodified	_RYTDRDFYF_					0	0	0		nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	nc|ENSG00000285025|L0R8F8|MIEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.7961945614001	2	641.796195	1281.57784	1.5595	0.0010009	-1.5768	-0.001012	-0.017274	-1.1087E-05	641.796134458032	20.766	0.14448	20.752	20.68	20.825	-0.014086	1155	49	0.92591566	0.02936846	0.9243962	374.85205	0	11.889679						193	7	4	NaN	NaN	NaN	0.46215	1	17626	17626		11.17	2.2084	1	20625			23366	8061	13483	13867	18590	18590					-0.05168961504728031
RYTEMALPFF	10	Unmodified	_RYTEMALPFF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.8155414075	2	637.815541	1273.61653	1.06	0.00067611	-1.7183	-0.0010959	-0.65822	-0.00041982	637.8141432187327	30.97	0.096556	30.97	30.946	31.042	0	1155	64	0.92591566	0.038523257	0.92591566	374.87704	0	15.596985						112	5	2	NaN	NaN	NaN	0.73114	1	18290	18290		5.9198	1.01	1	9339.8			23367	4364	13484	13868	18591	18591					-0.009333721945722573
RYTEMALPFF	10	Unmodified						0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.815541	1273.61653	1.7438	0.0011122	-6.1409	-0.0039167	-4.3971	-0.0028045	637.8115854480434	31.041	0.072447	31.036	31.036	31.109	-0.0050716	1146	52	0.93142134	0.031188905	0.9299019	377.10617		12.627502	0.033149	-0.0026652	0.0019931	NaN	5.9198	83	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6495			23368	4364	13484	13868							-0.009333721945722573
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8118446256001	2	607.811845	1213.60914	1.4942	0.0009082	-1.7753	-0.0010791	-0.2811	-0.00017086	607.8106790706867	16.901	0.19186	16.901	16.854	17.045	0	1170	79	0.91673553	0.047780514	0.91673553	371.3571	0	19.355225						333	9	4	NaN	NaN	NaN	0.23499	1	16820	16820		23.086	7.6231	1	43467			23369	620	13485	13869	18592	18592					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.5436552392667	3	405.543655	1213.60914	1.4188	0.00057539	-0.95886	-0.00038886	0.45994	0.00018653	405.5427279908423	16.925	0.14387	16.925	16.877	17.021	0	1530	52	0.6949163	0.03162068	0.6949163	422.24774	0	19.21347						161	7	3	NaN	NaN	NaN	0.13999	1	16821	16821		22.026	15.218	1	13745			23370	620	13485	13869	18593	18593					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13;USP13-PEX5L|1|fusion	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.8118446256001	2	607.811845	1213.60914	1.2682	0.00077082	-0.96862	-0.00058874	0.29956	0.00018208	607.8112737298102	17.042	0.26386	17.029	16.957	17.221	-0.013296	1170	79	0.91673553	0.04777533	0.9152161	371.3571	0	19.35315						372	12	4	NaN	NaN	NaN	0.061945	1	16153	16153		41.839	8.4132	1	47248			23371	620	13485	13869	18594	18594					0.01087611529374044
RYTFYVLEF	9	Unmodified	_RYTFYVLEF_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3162315117501	2	619.316232	1236.61791	1.3991	0.00086649	-1.0328	-0.00063966	0.36625	0.00022683	619.3152421951738	30.463	0.36199	30.463	30.318	30.68	0	1140	94	0.93509084	0.05685544	0.93509084	378.7133	0	23.02655						588	16	4	NaN	NaN	NaN	0.026469	1	17444	17444		63.731	27.496	1	223080			23372	3390	13486	13870	18595	18595					0.009065851658533575
RYTFYVLEF	9	Unmodified	_RYTFYVLEF_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3162315117501	2	619.316232	1236.61791	0.93017	0.00057607	-0.88984	-0.0005511	0.040327	2.4975E-05	619.3156198235499	30.51	0.36195	30.505	30.336	30.698	-0.0057545	1137	85	0.9369253	0.051339447	0.93540585	379.45624	0	20.792542						677	16	5	NaN	NaN	NaN	0.04743	1	16717	16717		48.002	28.839	1	239440			23373	3390	13486	13870	18596	18596					0.009065851658533575
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8247550356001	2	574.824755	1147.63496	2.0767	0.0011937	-5.2595	-0.0030233	-3.1829	-0.0018296	574.8217379830802	18.844	0.12	18.844	18.82	18.94	0	1212	52	0.8910048	0.03126979	0.8910048	361.1671	0	12.67514						151	6	2	NaN	NaN	NaN	0.1507	1	14735	14735		28.495	1.7637	1	46877			23374	2653	13487	13871	18597	18597					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8247550356001	2	574.824755	1147.63496	1.4271	0.00082035	0.0029116	1.6737E-06	1.43	0.00082202	574.8247637527642	18.89	0.072132	18.876	18.852	18.924	-0.014061	1212	46	0.8910048	0.02759105	0.88948536	361.1671	0	11.18396						106	4	2	NaN	NaN	NaN	0.024359	1	14243	14243		66.481	20.655	1	35123			23375	2653	13487	13871	18598	18598					0.0670450577167685
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7825558699	2	543.782556	1085.55056	1.8107	0.0009846	-1.606	-0.00087334	0.20462	0.00011127	543.7815631626327	19.66	0.14408	19.66	19.636	19.78	0	1251	58	0.8670771	0.03499019	0.8670771	351.7066	0	14.19281						273	7	4	NaN	NaN	NaN	0.012861	1	12200	12200		84.233	47.646	1	66427			23376	599	13488	13872	18599	18599					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7825558699	2	543.782556	1085.55056	1.5803	0.00085932	-1.2655	-0.00068815	0.31479	0.00017118	543.7820624129246	19.707	0.16844	19.693	19.621	19.789	-0.014141	1251	58	0.8670771	0.034993947	0.8655577	351.7066	0	14.194336						275	8	3	NaN	NaN	NaN	0.028569	1	11889	11889		60.984	24.397	1	68167			23377	599	13488	13872	18600	18600					0.011205549548776617
RYTMYQNQL	9	Unmodified	_RYTMYQNQL_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.79259762745	2	608.792598	1215.57064	1.8188	0.0011073	-1.8588	-0.0011316	-0.040006	-2.4355E-05	608.7919756271529	18.122	0.071991	18.108	18.084	18.156	-0.013948	1191	34	0.90387505	0.020218074	0.9023556	366.1408	0	8.189941						73	4	3	NaN	NaN	NaN	0.65696	1	16199	16199		2.8895	1.1873	1	6324.3			23378	3944	13489	13873	18601	18601					-0.028520173767901724
RYTMYQNQL	9	Unmodified						0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.792598	1215.57064	1.7008	0.0010355	-2.9074	-0.00177	-1.2066	-0.00073455	608.7913229016532	18.053	0.095898	18.053	18.053	18.149	0	1188	43	0.90571284	0.02573353	0.90571284	366.88528		10.424103	-0.027489	-0.00062549	0.0016786	NaN	2.8895	95	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6691.4			23379	3944	13489	13873							-0.028520173767901724
RYTPAIDVW	9	Unmodified	_RYTPAIDVW_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-3|CDK12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.79292359095	2	560.792924	1119.57129	1.4178	0.00079507	-0.61519	-0.000345	0.80256	0.00045007	560.7929002676982	24.454	0.14476	24.454	24.381	24.526	0	1251	100	0.8670771	0.060726464	0.8670771	351.57263	0	24.62268						426	7	4	NaN	NaN	NaN	0.12866	1	13654	13654		31.675	21.624	1	60648			23380	695	13490	13874	18602	18602					0.016291453345502305
RYTPAIDVW	9	Unmodified	_RYTPAIDVW_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000065883|ENST00000181839|CDK13	nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-3|CDK12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.79292359095	2	560.792924	1119.57129	1.3441	0.00075374	-1.1419	-0.00064036	0.20218	0.00011338	560.7924459256747	24.478	0.31371	24.465	24.32	24.634	-0.012747	1251	79	0.8670771	0.047858	0.8655577	351.57263	0	19.404938						457	14	4	NaN	NaN	NaN	0.11656	1	13256	13256		33.425	15.626	1	57491			23381	695	13490	13874	18603	18603					0.016291453345502305
RYTPAYAHL	9	Unmodified	_RYTPAYAHL_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.28526573435	2	546.285266	1090.55598	1.5245	0.00083283	-2.3832	-0.0013019	-0.8587	-0.0004691	546.2839173348901	16.134	0.11996	16.134	16.086	16.206	0	1191	34	0.90387505	0.020218074	0.90387505	366.61163	0	8.20047						91	6	2	NaN	NaN	NaN	0.14787	1	12428	12428		28.896	5.5612	1	12348			23382	3203	13491	13875	18604	18604					0.014322785373678926
RYTPVGRSFF	10	Unmodified	_RYTPVGRSFF_					0	0	0		ENSG00000092847|ENST00000373204|AGO1;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2;ENSG00000134698|ENST00000373210|AGO4	ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.5523736296	3	410.552374	1228.63529	1.5706	0.00064481	-2.5556	-0.0010492	-0.98505	-0.00040441	410.5512459704302	19.684	0.072006	19.684	19.66	19.732	0	1521	40	0.70049703	0.024177909	0.70049703	425.5803	0	14.689056						83	4	3	NaN	NaN	NaN	0.38087	1	17215	17215		24.67	16.214	1	7698.9			23383	1102	13492	13876	18605	18605					0.030119254915234706
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.29074504275	2	598.290745	1194.56694	1.6092	0.00096278	-0.39038	-0.00023356	1.2188	0.00072922	598.2902330836474	17.117	0.14406	17.117	17.093	17.237	0	1179	70	0.9112251	0.042274177	0.9112251	369.191	0	17.127777						240	7	4	NaN	NaN	NaN	0.21451	1	16288	16288		24.4	3.9516	1	52470			23384	4487	13493	13877	18606	18606					-0.022563638790188634
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;SWAP70-WEE1|1|fusion;WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.29074504275	2	598.290745	1194.56694	1.3925	0.0008331	-0.46726	-0.00027956	0.9252	0.00055354	598.2903099815517	17.258	0.23986	17.244	17.149	17.388	-0.013567	1179	76	0.9112251	0.04595518	0.90970564	369.191	0	18.619171						383	11	4	NaN	NaN	NaN	0.04743	1	15657	15657		48.002	19.107	1	62768			23385	4487	13493	13877	18607	18607					-0.022563638790188634
RYTVGGLETF	10	Unmodified	_RYTVGGLETF_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7956632451501	2	571.795663	1141.57677	2.0238	0.0011572	-4.6715	-0.0026712	-2.6477	-0.001514	571.7926874221513	22.814	0.1688	22.814	22.79	22.959	0	1233	91	0.87812483	0.05519694	0.87812483	355.9687	0	22.375366						282	8	2	NaN	NaN	NaN	0.34981	1	14520	14520		25.681	3.9103	1	45706			23386	1828	13494	13878	18608	18608					0.011648241263856107
RYTVGGLETF	10	Unmodified	_RYTVGGLETF_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7956632451501	2	571.795663	1141.57677	1.2008	0.00068662	-2.37	-0.0013551	-1.1691	-0.00066851	571.7940495358171	22.862	0.14463	22.848	22.8	22.945	-0.01354	1236	100	0.876284	0.060706794	0.8747646	355.22247	0	24.608917						256	7	2	NaN	NaN	NaN	0.38087	1	14043	14043		24.393	7.8092	1	46437			23387	1828	13494	13878	18609	18609					0.011648241263856107
RYTYSEWHSF	10	Unmodified	_RYTYSEWHSF_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3069264232	2	688.306926	1374.5993	1.9596	0.0013488	-1.4512	-0.00099888	0.50836	0.00034991	688.3058830080396	19.396	0.16796	19.396	19.348	19.516	0	1080	37	0.9717421	0.021967113	0.9717421	393.12067	0	8.886841						198	8	3	NaN	NaN	NaN	0.1159	1	19845	19845		43.776	23.262	1	25671			23388	2894;2890	13495	13879	18610	18610					-0.07301576476015725
RYTYSEWHSF	10	Unmodified	_RYTYSEWHSF_					0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	459.2070431043333	3	459.207043	1374.5993	1.1683	0.00053647	0.22334	0.00010256	1.3916	0.00063903	459.20614026964705	19.372	0.07202	19.372	19.372	19.444	0	1413	40	0.7673241	0.024091423	0.7673241	465.6309	0	14.619263						58	4	2	NaN	NaN	NaN	0.23201	1	19846	19846		22.269	18.964	1	4555.7			23389	2894;2890	13495	13879	18611	18611					-0.07301576476015725
RYTYSEWHSF	10	Unmodified						0	0	0		ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134762|Q14574-2|DSC3;nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	ENSG00000134762|ENST00000360428|DSC3;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134762|ENST00000360428|DSC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	688.306926	1374.5993	1.4921	0.001027	-2.1357	-0.00147	-0.64359	-0.00044298	688.3057372541634	19.563	0.19262	19.549	19.452	19.645	-0.014141	1083	40	0.9699114	0.023798943	0.96839195	392.38007		9.62793	0.076226	-0.00044397	-0.0016751	NaN	43.776	238	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21145			23390	2894;2890	13495	13879							-0.07301576476015725
RYVDKVSNL	9	Unmodified	_RYVDKVSNL_					0	0	0		ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF;ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	ENST00000473572.2_1_19:36501753-36502343:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.30365545275	2	547.303655	1092.59276	1.7315	0.00094765	-4.1229	-0.0022565	-2.3915	-0.0013089	547.3014591352251	15.316	0.095923	15.304	15.256	15.352	-0.012202	1263	34	0.85970795	0.02026838	0.8581885	348.68936	0	8.220673						87	5	3	NaN	NaN	NaN	0.53237	1	12195	12195		8.2775	1.4143	1	6343.4			23391	6060	13496	13880	18612	18612					0.050165303632638825
RYVEGIVHL	9	Unmodified	_RYVEGIVHL_					0	0	0		MINK1-ALOX12|1|fusion;ENSG00000108839|ENST00000251535|ALOX12	MINK1-ALOX12|1|fusion	MINK1-ALOX12|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.3087408306501	2	543.308741	1084.60293	1.6227	0.00088164	-2.6166	-0.0014216	-0.99388	-0.00053998	543.3071712179766	19.997	0.09614	19.997	19.972	20.069	0	1182	46	0.9093879	0.027561188	0.9093879	368.8729	0	11.179596						128	5	3	NaN	NaN	NaN	0.054111	1	12181	12181		45.165	28.748	1	14666			23392	1699	13497	13881	18613	18613					0.06401138088517655
RYVEGIVHL	9	Unmodified	_RYVEGIVHL_					0	0	0		MINK1-ALOX12|1|fusion;ENSG00000108839|ENST00000251535|ALOX12	MINK1-ALOX12|1|fusion	MINK1-ALOX12|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3087408306501	2	543.308741	1084.60293	1.5218	0.00082681	-1.1262	-0.00061187	0.39562	0.00021494	543.3081263970591	20.164	0.14441	20.15	20.102	20.246	-0.014143	1182	52	0.9093879	0.031242788	0.90786844	368.87286	0	12.672943						143	7	2	NaN	NaN	NaN	0.16939	1	11868	11868		27.296	2.3352	1	15293			23393	1699	13497	13881	18614	18614					0.06401138088517655
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8060309662001	2	570.806031	1139.59751	2.3118	0.0013196	-1.5793	-0.00090146	0.73254	0.00041814	570.8055141371806	23.103	0.16858	23.103	23.007	23.176	0	1215	73	0.8891654	0.04413849	0.8891654	360.4517	0	17.892944						257	8	4	NaN	NaN	NaN	0.017558	1	14439	14439		75.089	27.607	1	100350			23394	352	13498	13882	18615	18615					0.0332941450603812
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8060309662001	2	570.806031	1139.59751	1.6123	0.00092031	-2.1541	-0.0012296	-0.54175	-0.00030924	570.8047907146627	23.151	0.31352	23.138	23.065	23.379	-0.013294	1218	79	0.8873258	0.047816634	0.8858064	359.70596	0	19.384033						396	14	4	NaN	NaN	NaN	0.024221	1	13970	13970		66.656	34.204	1	115450			23395	352	13498	13882	18616	18616					0.0332941450603812
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENSG00000175938|ENST00000318663|ORAI3;ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENSG00000175938|ENST00000318663|ORAI3	ENSG00000175938|ENST00000318663|ORAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7954662799	2	570.795466	1139.57638	2.3273	0.0013284	0.18709	0.00010679	2.5144	0.0014352	570.7951127974063	28.17	0.26542	28.17	28.122	28.388	0	1206	70	0.894683	0.042283356	0.894683	362.6885	0	17.14093						482	12	4	NaN	NaN	NaN	0.011206	1	14434	14434		89.256	53.959	1	358200			23396	5005	13499	13883	18617	18617					0.012174491971563839
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENSG00000175938|ENST00000318663|ORAI3;ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENSG00000175938|ENST00000318663|ORAI3	ENSG00000175938|ENST00000318663|ORAI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7954662799	2	570.795466	1139.57638	1.3724	0.00078338	0.10179	5.8102E-05	1.4742	0.00084149	570.7958197809148	28.194	0.31372	28.185	28.137	28.45	-0.0089779	1206	76	0.894683	0.045960188	0.89316356	362.6885	0	18.63144						645	14	4	NaN	NaN	NaN	0.01452	1	13963	13963		79.199	50.303	1	366220			23397	5005	13499	13883	18618	18618					0.012174491971563839
RYVEQKAGITF	11	Unmodified	_RYVEQKAGITF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.35641930475	2	656.356419	1310.69829	1.7445	0.001145	-2.1165	-0.0013892	-0.372	-0.00024416	656.3562028932334	17.573	0.071854	17.573	17.549	17.621	0	1092	31	0.9644182	0.018315732	0.9644182	390.3471	0	7.4132996						48	4	2	NaN	NaN	NaN	0.63747	1	18963	18963		11.561	7.2512	1	3628.4			23398	1637	13500	13884	18619	18619					0.05536446488895308
RYVEQKAGITF	11	Unmodified	_RYVEQKAGITF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.35641930475	2	656.356419	1310.69829	2.0039	0.0013153	-2.4592	-0.0016141	-0.45528	-0.00029883	656.3530384210039	17.714	0.095886	17.7	17.652	17.748	-0.013784	1095	25	0.9625867	0.0146510005	0.96106726	389.6058	0	5.9299927						61	5	2	NaN	NaN	NaN	0.048526	1	18126	18126		50.211	23.165	1	4291.1			23399	1637	13500	13884	18620	18620					0.05536446488895308
RYVEQSNLM	9	Unmodified	_RYVEQSNLM_					0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.2793230767	2	570.279323	1138.54409	1.4807	0.00084441	-3.4867	-0.0019884	-2.006	-0.001144	570.2769625671874	17.186	0.11991	17.172	17.124	17.244	-0.013569	1239	67	0.87444305	0.04051274	0.8729236	354.48743	0	16.42331						145	6	2	NaN	NaN	NaN	0.48181	1	13926	13926		10.36	1.3982	1	15839			23400	2210	13501	13885	18621	18621					-0.019637062681340467
RYVEQSNLM	9	Unmodified						0	0	0		nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	nc|ENSG00000119321|Q5T1M5-2|FKBP15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.279323	1138.54409	1.9036	0.0010856	-5.0565	-0.0028836	-3.1529	-0.001798	570.2760785270553	17.165	0.14406	17.165	17.093	17.237	0	1236	70	0.876284	0.04236108	0.876284	355.23376		17.172607	-0.003522	-0.00086479	0.0016802	NaN	10.36	180	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16568			23401	2210	13501	13885							-0.019637062681340467
RYVFNLAEL	9	Unmodified	_RYVFNLAEL_					0	0	0		ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2;ENST00000560776.1_1_15:59961053-59961500:-|nuORF	ENSG00000140299|ENST00000607373|BNIP2	ENSG00000140299|ENST00000607373|BNIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.8085736551501	2	562.808574	1123.60259	1.6957	0.00095438	-10.927	-0.0061498	-9.2312	-0.0051954	563.8004253123116	27.615	0.072367	27.615	27.591	27.664	0	1215	103	0.8891654	0.0625633	0.8891654	360.51306	0	25.366364						225	4	3	NaN	NaN	NaN	0.18779	1	13833	13833		26.115	3.9886	1	29832			23402	3261	13502	13886	18622	18622					0.04573718368669688
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.8093019366501	2	645.809302	1289.60405	1.7902	0.0011561	-2.7475	-0.0017743	-0.95731	-0.00061824	645.8076283317077	21.175	0.16863	21.175	21.127	21.296	0	1137	82	0.9369253	0.049556673	0.9369253	379.2841	0	20.061401						461	8	4	NaN	NaN	NaN	0.019815	1	18586	18586		63.765	39.203	1	70384			23403	1655	13503	13887	18623	18623					-0.029166923332468286
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.8093019366501	2	645.809302	1289.60405	1.6689	0.0010778	-1.8204	-0.0011756	-0.15153	-9.7862E-05	645.8082703671837	21.2	0.2166	21.186	21.138	21.354	-0.014004	1137	76	0.9369253	0.0458858	0.93540585	379.2841	0	18.575378						443	10	4	NaN	NaN	NaN	0.007016	1	17757	17757		75.089	42.636	1	68418			23404	1655	13503	13887	18624	18624					-0.029166923332468286
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.32131688965	2	555.321317	1108.62808	1.6219	0.00090068	-1.2248	-0.00068016	0.39712	0.00022053	555.321399115486	26.36	0.048256	26.36	26.336	26.384	0	1209	58	0.892844	0.034948587	0.892844	362.06378	0	14.172272						101	3	3	NaN	NaN	NaN	0.27608	1	13237	13237		20.449	11.325	1	9129.4			23405	3666	13504	13888	18625	18625					0.07811192891063001
RYVIIPTTF	9	Unmodified						0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.321317	1108.62808	1.6203	0.00089978	-1.1747	-0.00065234	0.44557	0.00024744	555.3210208150535	26.408	0.072399	26.397	26.349	26.421	-0.011137	1209	46	0.892844	0.02759105	0.8913246	362.06378		11.188629	0.018423	3.8696E-05	-0.00075972	NaN	20.449	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8558.3			23406	3666	13504	13888							0.07811192891063001
RYVKKLGDF	9	Unmodified	_RYVKKLGDF_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-5|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.88535275210006	3	375.885353	1124.63423	1.3098	0.00049232	-2.7063	-0.0010172	-1.3965	-0.00052492	375.88423402624505	14.645	0.096043	14.645	14.597	14.693	0	1476	34	0.72837335	0.020429373	0.72837335	442.96988	0	12.424377						66	5	2	NaN	NaN	NaN	0.33629	1	13878	13878		14.854	9.9533	1	5448.2			23407	894	13505	13889	18626	18626					0.07689711122611698
RYVLYPNNF	9	Unmodified	_RYVLYPNNF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.3061981417001	2	593.306198	1184.59784	1.6848	0.00099957	-2.8246	-0.0016759	-1.1399	-0.00067629	593.3047540099233	22.911	0.12048	22.911	22.887	23.007	0	1179	82	0.9112251	0.049572706	0.9112251	369.2265	0	20.086761						193	6	3	NaN	NaN	NaN	0.074859	1	15999	15999		39.459	20.34	1	29318			23408	5962;7616	13506	13890	18627	18627					0.012928342258874181
RYVLYPNNF	9	Unmodified	_RYVLYPNNF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.3061981417001	2	593.306198	1184.59784	1.1227	0.00066612	-2.6361	-0.001564	-1.5134	-0.00089789	593.3046080467159	22.958	0.16864	22.945	22.921	23.089	-0.01354	1179	100	0.9112251	0.060595453	0.90970564	369.2265	0	24.553131						191	8	3	NaN	NaN	NaN	0.062072	1	15391	15391		41.785	15.053	1	28073			23409	5962;7616	13506	13890	18628	18628					0.012928342258874181
RYVLYPNNFQF	11	Unmodified	_RYVLYPNNFQF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.8696938555	2	730.869694	1459.72483	1.1554	0.00084448	-1.9306	-0.001411	-0.77518	-0.00056656	730.867950724283	27.012	0.12069	27.012	26.988	27.109	0	1044	55	0.99369496	0.032904446	0.99369496	401.76825	0	13.303864						228	6	4	NaN	NaN	NaN	0.00074833	1	20426	20426		78.289	45.511	1	25480			23410	5962;7616	13507	13891	18629	18629					0.013361353802110898
RYVLYPNNFQF	11	Unmodified	_RYVLYPNNFQF_					0	0	0		ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENSG00000213614|ENST00000268097|HEXA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.8696938555	2	730.869694	1459.72483	1.135	0.00082956	-3.7038	-0.002707	-2.5688	-0.0018775	730.8673240062967	27.035	0.19309	27.025	27.001	27.194	-0.010124	1041	52	0.9955231	0.03107816	0.99400365	402.5074	0	12.56543						240	9	4	NaN	NaN	NaN	0.37105	1	19442	19442		23.086	11.915	1	23137			23411	5962;7616	13507	13891	18630	18630					0.013361353802110898
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.28661679255	2	543.286617	1084.55868	1.7431	0.00094703	-1.6414	-0.00089175	0.10175	5.5279E-05	543.2856483376247	19.372	0.19195	19.372	19.3	19.492	0	1254	70	0.8652351	0.04235655	0.8652351	350.96347	0	17.18097						311	9	3	NaN	NaN	NaN	0.054111	1	12171	12171		45.165	9.8684	1	78477			23412	2844	13508	13892	18631	18631					0.019783658800179182
RYVMTTTTL	9	Unmodified	_RYVMTTTTL_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.28661679255	2	543.286617	1084.55868	1.6218	0.00088113	-1.9703	-0.0010704	-0.34846	-0.00018931	543.2854033087724	19.418	0.14427	19.404	19.356	19.5	-0.014141	1257	67	0.86339295	0.04051715	0.8618735	350.21625	0	16.434875						215	7	2	NaN	NaN	NaN	0.059222	1	11855	11855		42.995	15.699	1	73551			23413	2844	13508	13892	18632	18632					0.019783658800179182
RYVMTTTTL	9	Oxidation (M)	_RYVM(Oxidation (M))TTTTL_		RYVM(1)TTTTL		RYVM(40)TTTTL	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2840741036	2	551.284074	1100.5536	2.0249	0.0011163	-7.2742	-0.0040101	-5.2493	-0.0028939	551.2792844288718	16.419	0.19176	16.406	16.358	16.55	-0.012995	1239	88	0.87444305	0.053429186	0.8729236	354.63382	0	21.668427						369	9	4	NaN	NaN	NaN	0.070055	1	12532	12532		40.154	11.258	1	123190			23414	2844	13508	13893	18633	18633		329			0.007340620173863499
RYVPGLLLSYL	11	Unmodified	_RYVPGLLLSYL_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.3819057737502	2	647.381906	1292.74926	0.90868	0.00058826	-3.179	-0.002058	-2.2703	-0.0014698	647.3791368456294	32.103	0.24128	32.099	32.003	32.244	-0.0037575	1086	46	0.9680805	0.027469158	0.9665611	391.88617	0	11.11972						238	11	3	NaN	NaN	NaN	0.065807	1	17800	17800		45.827	26.663	1	26148			23415	3340	13509	13894	18634	18634					0.1145939553377957
RYVPGLLLSYL	11	Unmodified						0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	647.381906	1292.74926	1.275	0.00082542	-6.6861	-0.0043285	-5.4111	-0.0035031	647.3764166477741	31.911	0.19309	31.911	31.839	32.032	0	1089	73	0.96624947	0.043976784	0.96624947	391.14496		17.802124	-0.094127	-0.0033336	-0.00015582	NaN	45.827	215	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30075			23416	3340	13509	13894							0.1145939553377957
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.8063653172001	2	579.806365	1157.59818	2.172	0.0012593	-3.9182	-0.0022718	-1.7462	-0.0010125	579.8046787635475	17.165	0.28787	17.165	17.069	17.357	0	1200	58	0.89836043	0.034933507	0.89836043	364.11148	0	14.158783						495	13	4	NaN	NaN	NaN	0.27236	1	15071	15071		23.118	9.076	1	90911			23417	1879	13510	13895	18635	18635					0.025682539457420717
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.8733357003333	3	386.873336	1157.59818	1.6087	0.00062235	-2.0734	-0.00080215	-0.46474	-0.0001798	386.8727816072491	17.165	0.095999	17.165	17.141	17.237	0	1536	97	0.69119483	0.059530973	0.69119483	420.2145	0	36.192078						186	5	2	NaN	NaN	NaN	0.25424	1	15072	15072		21.85	12.239	1	16566			23418	1879	13510	13895	18636	18636					0.025682539457420717
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.8063653172001	2	579.806365	1157.59818	1.9003	0.0011018	-2.9467	-0.0017085	-1.0465	-0.00060676	579.8045557250506	17.45	0.38385	17.436	17.292	17.676	-0.013569	1200	88	0.89836043	0.053331077	0.896841	364.11148	0	21.615448						545	17	3	NaN	NaN	NaN	0.34188	1	14572	14572		23.118	10.53	1	86224			23419	1879	13510	13895	18637	18637					0.025682539457420717
RYVPSTPWFL	10	Unmodified	_RYVPSTPWFL_					0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3374982701	2	633.337498	1264.66044	1.4223	0.00090079	-4.8251	-0.0030559	-3.4028	-0.0021551	633.3346301364961	29.184	0.096539	29.184	29.136	29.232	0	1143	61	0.9332562	0.03669083	0.9332562	377.87775	0	14.856201						127	5	2	NaN	NaN	NaN	0.6772	1	18097	18097		9.6116	4.8826	1	9613.1			23420	972	13511	13896	18638	18638					0.038699802940755035
RYVPSTPWFL	10	Unmodified						0	0	0		nc|ENSG00000085721|Q9NYV6-4|RRN3;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	nc|ENSG00000085721|Q9NYV6-4|RRN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.337498	1264.66044	1.2582	0.00079686	-5.425	-0.0034358	-4.1668	-0.002639	633.3359301898088	29.207	0.12065	29.2	29.2	29.32	-0.0077209	1140	61	0.93509084	0.03667897	0.9335714	378.6206		14.85141	0.0078224	-0.00039316	0.0001576	NaN	9.6116	158	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10584			23421	972	13511	13896							0.038699802940755035
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3514713126001	2	602.351471	1202.68839	1.528	0.00092041	-1.4754	-0.00088874	0.052583	3.1674E-05	602.3510088785072	16.158	0.19199	16.158	16.086	16.278	0	1146	40	0.93142134	0.023855448	0.93142134	377.34464	0	9.66449						240	9	4	NaN	NaN	NaN	0.036546	1	16560	16560		52.624	32.069	1	41739			23422	607	13512	13897	18639	18639					0.09515303274179132
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3514713126001	2	602.351471	1202.68839	1.4776	0.00089006	-1.1062	-0.00066633	0.37143	0.00022373	602.3504991206886	16.467	0.33564	16.454	16.286	16.621	-0.012995	1146	40	0.93142134	0.023855448	0.9299019	377.34464	0	9.66449						360	15	3	NaN	NaN	NaN	0.27608	1	15914	15914		20.449	4.032	1	43432			23423	607	13512	13897	18640	18640					0.09515303274179132
RYVRKFVLM	9	Unmodified	_RYVRKFVLM_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.5742326778334	3	404.574233	1210.70087	2.09	0.00084556	-2.4699	-0.00099925	-0.37986	-0.00015368	404.5734656143554	18.532	0.33572	18.532	18.412	18.748	0	1416	49	0.76547134	0.029643	0.76547134	465.13123	0	18.012268						500	15	4	NaN	NaN	NaN	0.14301	1	16740	16740		20.513	13.383	1	104860			23424	2664	13513	13898	18641	18641					0.10394623412867077
RYVRKFVLM	9	Unmodified	_RYVRKFVLM_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.5742326778334	3	404.574233	1210.70087	1.314	0.0005316	-1.5119	-0.0006117	-0.19797	-8.0093E-05	404.907881275715	19.876	0.19255	19.861	19.789	19.982	-0.014141	1416	37	0.76547134	0.022234678	0.7639519	465.1312	0	13.510651						174	9	4	NaN	NaN	NaN	0.45297	1	16069	16069		10.36	7.4707	1	22896			23425	2664	13513	13898	18642	18642					0.10394623412867077
RYVRKFVLM	9	Unmodified	_RYVRKFVLM_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.5742326778334	3	404.574233	1210.70087	1.5402	0.00062314	-0.94744	-0.00038331	0.5928	0.00023983	404.9083244040736	19.563	0.1685	19.549	19.428	19.597	-0.014141	1416	34	0.76547134	0.020382881	0.7639519	465.1312	0	12.385437						96	8	2	NaN	NaN	NaN	0.23112	1	16070	16070		15.822	10.805	1	7335.8			23426	2664	13513	13898	18643	18643					0.10394623412867077
RYVRKFVLM	9	Oxidation (M)	_RYVRKFVLM(Oxidation (M))_		RYVRKFVLM(1)		RYVRKFVLM(50)	0	0	1		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.9058708852	3	409.905871	1226.69578	1.6963	0.00069534	-2.2797	-0.00093444	-0.5833	-0.0002391	409.905225909236	15.702	0.38397	15.702	15.558	15.942	0	1392	58	0.780288	0.035176277	0.780288	474.06485	0	21.371368						514	17	4	NaN	NaN	NaN	0.041983	1	17160	17160		50.315	39.955	1	133100			23427	2664	13513	13899	18644	18644		304			0.09150319550235508
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.57176815656663	3	424.571768	1270.69348	1.9165	0.00081368	-1.9163	-0.00081359	0.00019644	8.3403E-08	424.57113289387945	20.093	0.55276	20.093	19.972	20.525	0	1443	46	0.7487872	0.027821898	0.7487872	454.75146	0	16.896759						817	24	5	NaN	NaN	NaN	0.1507	1	18252	18252		28.495	9.1589	1	402270			23428	2819	13514	13900	18645	18645					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.57176815656663	3	424.571768	1270.69348	0.86418	0.00036691	-1.0526	-0.00044688	-0.18838	-7.9979E-05	424.5712311555623	22.284	0.072344	22.27	22.246	22.318	-0.013731	1446	40	0.7469324	0.024112344	0.74541295	453.62503	0	14.64386						80	4	2	NaN	NaN	NaN	0.53237	1	17436	17436		8.2775	3.5485	1	16000			23429	2819	13514	13900	18646	18646					0.06895607136789295
RYVSLIPFL	9	Unmodified	_RYVSLIPFL_					0	0	0		nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.3316846107001	2	554.331685	1106.64882	0.9387	0.00052035	-1.0197	-0.00056527	-0.081025	-4.4915E-05	554.3316452586527	32.659	0.14482	32.659	32.611	32.756	0	1212	49	0.8910048	0.029425621	0.8910048	361.32587	0	11.932861						170	7	3	NaN	NaN	NaN	0.35794	1	13144	13144		15.463	1.7256	1	17936			23430	558	13515	13901	18647	18647					0.09975783270760985
RYVSLIPFL	9	Unmodified						0	0	0		nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.331685	1106.64882	0.98332	0.00054509	-2.8346	-0.0015713	-1.8512	-0.0010262	554.3296177549548	32.779	0.1448	32.776	32.703	32.848	-0.0031052	1209	43	0.892844	0.025744617	0.8913246	362.07172		10.4401245	0.058242	-0.00086764	0.00015988	NaN	15.463	180	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15979			23431	558	13515	13901							0.09975783270760985
RYVSLIVLL	9	Unmodified	_RYVSLIVLL_					0	0	0			REV__ENSG00000168412|ENST00000307161|MTNR1A	REV__ENSG00000168412|ENST00000307161|MTNR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.3473346749001	2	538.347335	1074.68012	1.9972	0.0010752	-8.1568	-0.0043912	-6.1595	-0.003316	538.3428262359075	30.077	0.096579	30.077	30.053	30.149	0	1188	43	0.90571284	0.025725186	0.90571284	367.42477	0	10.436066						129	5	3	NaN	NaN	NaN	0.31471	1	11767	11767		17.97	4.5066	1	13120	+		23432	10511	13516	13902	18648	18648					0.14576356304860383
RYVWWKKSL	9	Unmodified	_RYVWWKKSL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.57663063380005	3	422.576631	1264.70806	2.087	0.00088191	-2.1281	-0.0008993	-0.041145	-1.7387E-05	422.5760345240552	18.46	0.21583	18.46	18.388	18.604	0	1437	40	0.7524962	0.024101853	0.7524962	457.02722	0	14.638245						124	10	2	NaN	NaN	NaN	0.44082	1	18108	18108		7.6826	3.7545	1	10064			23433	3740	13517	13903	18649	18649					0.08629679284945269
RYWPEIFFF	9	Unmodified	_RYWPEIFFF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|344|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|344|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|344|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.5536030944	3	435.553603	1303.63898	1.3289	0.00057882	-2.7991	-0.0012191	-1.4701	-0.00064033	435.5522633748683	22.308	0.096487	22.308	22.26	22.356	0	1497	40	0.71537006	0.024159491	0.71537006	434.33878	0	14.668518						70	5	2	NaN	NaN	NaN	0.55027	1	18833	18833		6.9844	0	1	6751.6			23434	7858	13518	13904	18650	18650					-0.0006940473463146191
RYYDTEYID	9	Unmodified	_RYYDTEYID_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R;REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.18390411459995	3	413.183904	1236.52988	1.3259	0.00054782	-7.3371	-0.0030316	-6.0113	-0.0024838	413.51454704219344	26.746	0.097029	26.746	26.698	26.795	0	1491	40	0.7190863	0.024151623	0.7190863	436.8431	0	14.672058						83	5	2	NaN	NaN	NaN	0.61413	1	17430	17430		2.5994	1.0739	1	8207.7	+		23435	9796;10612	13519	13905	18651	18651					-0.07892080215447095
RYYDTEYID	9	Unmodified						0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R;REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	413.183904	1236.52988	1.3259	0.00054782	-7.3371	-0.0030316	-6.0113	-0.0024838	413.51454704219344	26.746	0.097029	26.746	26.698	26.795	0	1491	40	0.7190863	0.024151623	0.7190863	436.8431		14.672058	-0.0065724	-0.00042398	-0.00016919	NaN	2.5994	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8207.7	+		23436	9796;10612	13519	13905							-0.07892080215447095
RYYDTEYID	9	Unmodified						0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R;REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	413.183904	1236.52988	1.072	0.00044293	-6.8524	-0.0028313	-5.7804	-0.0023884	413.515440633786	26.77	0.096529	26.759	26.735	26.832	-0.010645	1488	40	0.7209441	0.02414906	0.71942466	437.97174		14.670471	0.0065724	0.00017685	0.00016919	NaN	2.5994	104	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8281.6	+		23437	9796;10612	13519	13905							-0.07892080215447095
RYYGNISRF	9	Unmodified	_RYYGNISRF_					0	0	0		ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000461880.5_1_6:31847863-31852380:-|nuORF	ENST00000461880.5_1_6:31847863-31852380:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3014471148	2	588.301447	1174.58834	1.9076	0.0011222	-1.8963	-0.0011156	0.011257	6.6228E-06	588.3002307850096	16.422	0.21578	16.422	16.374	16.59	0	1185	55	0.90755045	0.033082366	0.90755045	367.77362	0	13.4062195						266	10	3	NaN	NaN	NaN	0.061945	1	15635	15635		41.839	23.869	1	46641			23438	5880	13520	13906	18652	18652					0.008030659403630125
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3478659911501	2	632.347866	1262.68118	2.0261	0.0012812	-3.0249	-0.0019128	-0.99878	-0.00063158	632.3456793534158	26.288	0.19311	26.288	26.263	26.456	0	1110	40	0.95342636	0.023824632	0.95342636	386.0512	0	9.64679						189	9	3	NaN	NaN	NaN	0.20577	1	18062	18062		24.961	11.498	1	23669			23439	5121	13521	13907	18653	18653					0.0603457067375075
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.90100281630004	3	421.901003	1262.68118	1.9146	0.00080777	-1.6761	-0.00070715	0.2385	0.00010062	421.9010310028536	26.288	0.072435	26.288	26.288	26.36	0	1404	34	0.77288127	0.020371795	0.77288127	469.41617	0	12.373016						62	4	2	NaN	NaN	NaN	0.023074	1	18063	18063		66.656	57.071	1	4945.3			23440	5121	13521	13907	18654	18654					0.0603457067375075
RYYQNQYHC	9	Unmodified	_RYYQNQYHC_					0	0	0		ENST00000566167.5_1_16:70380850-70389427:+|nuORF	ENST00000566167.5_1_16:70380850-70389427:+|nuORF	ENST00000566167.5_1_16:70380850-70389427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.5172231797667	3	425.517223	1273.52984	1.4939	0.00063567	-0.83652	-0.00035596	0.65735	0.00027972	425.5168562022344	22.308	0.12061	22.308	22.284	22.405	0	1401	43	0.77473325	0.02592355	0.77473325	470.49768	0	15.743439						141	6	3	NaN	NaN	NaN	0.68549	1	18285	18285		0.44583	0.060735	1	19794			23441	7625	13522	13908	18655	18655					-0.09598358696416653
SAAAVDAGM	9	Unmodified	_SAAAVDAGM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	792.3556299920001	1	792.35563	791.348354	2.0425	0.0016184	-0.71743	-0.00056846	1.3251	0.0010499	792.3554953741144	16.901	0.14387	16.901	16.877	17.021	0	579	46	1.2747238	0.02696979	1.2747238	259.73532	0	5.4953003						98	7	2	NaN	NaN	NaN	0.29681	1	4636	4636		19.118	3.9429	1	6786.3			23442	406	13523	13909	18656	18656					-0.055666717221583895
SAAAVDAGM	9	Unmodified	_SAAAVDAGM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	792.3556299920001	1	792.35563	791.348354	2.1713	0.0017204	-0.81544	-0.00064612	1.3558	0.0010743	792.3547030129417	16.898	0.11985	16.885	16.861	16.981	-0.013294	576	37	1.2765218	0.021577	1.2750024	260.10168	0	4.3964844						84	6	2	NaN	NaN	NaN	0.25448	1	4549	4549		21.835	6.6596	1	6138.4			23443	406	13523	13909	18657	18657					-0.055666717221583895
SAAAVDAGMAM	11	Unmodified	_SAAAVDAGMAM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.4332283860001	1	994.433228	993.425952	1.8446	0.0018343	-0.46869	-0.00046608	1.3759	0.0013682	994.43297620627	21.272	0.16846	21.272	21.224	21.392	0	285	61	1.4500183	0.035588145	1.4500183	294.42615	0	7.226166						227	8	3	NaN	NaN	NaN	0.022256	1	8331	8331		60.984	41.82	1	30422			23444	406	13524	13910	18658	18658					-0.0710240184828308
SAAAVDAGMAM	11	Unmodified	_SAAAVDAGMAM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.4332283860001	1	994.433228	993.425952	1.5237	0.0015152	-1.5068	-0.0014985	0.016852	1.6758E-05	994.4324304804869	21.272	0.14428	21.258	21.234	21.378	-0.014004	288	58	1.4482387	0.033810496	1.4467193	294.06482	0	6.8652344						233	7	4	NaN	NaN	NaN	7.9405E-05	1	8164	8164		87.778	63.928	1	28649			23445	406	13524	13910	18659	18659					-0.0710240184828308
SAAAVDAGMAM	11	Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM_		SAAAVDAGM(0.99)AM(0.01)		SAAAVDAGM(20)AM(-20)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4281430081002	1	1010.42814	1009.42087	1.9558	0.0019762	-0.88189	-0.00089108	1.0739	0.0010851	1010.4274295068672	17.453	0.14381	17.453	17.429	17.573	0	288	61	1.4482387	0.03559184	1.4482387	294.00104	0	7.225342						184	7	3	NaN	NaN	NaN	0.027106	1	8937	8937		58.2	39.036	2	17428			23446	406	13524	13911	18660	18660		36;37			-0.08346705710891911
SAAAVDAGMAM	11	Oxidation (M)	_SAAAVDAGMAM(Oxidation (M))_		SAAAVDAGMAM(1)		SAAAVDAGM(-43)AM(43)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.4281430081002	1	1010.42814	1009.42087	1.8995	0.0019194	-0.763	-0.00077095	1.1365	0.0011484	1010.4289973732127	17.093	0.16807	17.093	17.069	17.237	0	291	61	1.446459	0.03559947	1.446459	293.63974	0	7.226898						244	8	3	NaN	NaN	NaN	4.4247E-12	1	8938	8938		115.07	81.645	2	23354			23447	406	13524	13911	18661	18661		36;37			-0.08346705710891911
SAAAVDAGMAM	11	Oxidation (M)	_SAAAVDAGMAM(Oxidation (M))_		SAAAVDAGM(0.165)AM(0.835)		SAAAVDAGM(-7)AM(7)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.71770973735005	2	505.71771	1009.42087	1.8513	0.00093625	-0.22215	-0.00011235	1.6292	0.00082391	505.7179313682235	17.117	0.12007	17.117	17.069	17.189	0	1350	46	0.80618626	0.027722597	0.80618626	327.31674	0	11.255554						161	6	3	NaN	NaN	NaN	0.068415	1	8939	8939		45.165	30.74	2	13462			23448	406	13524	13911	18662	18662		36;37			-0.08346705710891911
SAAAVDAGMAM	11	Oxidation (M)	_SAAAVDAGMAM(Oxidation (M))_		SAAAVDAGMAM(1)		SAAAVDAGM(-38)AM(38)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4281430081002	1	1010.42814	1009.42087	1.915	0.0019349	-1.4639	-0.0014792	0.45102	0.00045572	1010.4273919408856	17.09	0.16797	17.077	17.053	17.221	-0.013294	291	58	1.446459	0.033814073	1.4449396	293.63974	0	6.864441						223	8	3	NaN	NaN	NaN	1.5631E-15	1	8767	8767		119.86	91.363	2	24967			23449	406	13524	13911	18663	18663		36;37			-0.08346705710891911
SAAAVDAGMAM	11	Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM_		SAAAVDAGM(0.997)AM(0.003)		SAAAVDAGM(26)AM(-26)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4281430081002	1	1010.42814	1009.42087	1.959	0.0019794	-1.0579	-0.001069	0.90103	0.00091042	1010.4270321103049	17.474	0.19204	17.46	17.412	17.604	-0.013567	282	58	1.4517976	0.03380692	1.4502782	294.7235	0	6.8630066						202	9	3	NaN	NaN	NaN	0.01289	1	8768	8768		66.481	48.511	2	18366			23450	406	13524	13911	18664	18664		36;37			-0.08346705710891911
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(76)AM(76)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7151670484001	2	513.715167	1025.41578	2.2567	0.0011593	-2.3514	-0.001208	-0.094762	-4.8681E-05	513.7145468646748	14.117	0.24019	14.117	14.045	14.285	0	1344	61	0.8098828	0.03695345	0.8098828	328.7486	0	15.000183						409	11	4	NaN	NaN	NaN	0.0034125	1	9577	9577		75.698	51.298	1	59689			23451	406	13524	13912	18665	18665		36;37			-0.09591009573523479
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(50)AM(50)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4230576302	1	1026.42306	1025.41578	2.2338	0.0022928	-0.12789	-0.00013127	2.1059	0.0021615	1026.4218898845882	14.093	0.1441	14.093	14.069	14.213	0	288	55	1.4482387	0.03203273	1.4482387	293.93924	0	6.501465						142	7	2	NaN	NaN	NaN	0.048117	1	9578	9578		50.315	33.898	1	12631			23452	406	13524	13912	18666	18666		36;37			-0.09591009573523479
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(55)AM(55)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7151670484001	2	513.715167	1025.41578	1.2529	0.00064362	-1.2745	-0.00065472	-0.021618	-1.1106E-05	513.7147228498242	14.093	0.21568	14.082	14.01	14.226	-0.010672	1344	73	0.8098828	0.04433459	0.8083634	328.7486	0	17.996338						450	10	4	NaN	NaN	NaN	0.031961	1	9390	9390		55.413	36.249	1	67725			23453	406	13524	13912	18667	18667		36;37			-0.09591009573523479
SAAAVDAGMAM	11	2 Oxidation (M)	_SAAAVDAGM(Oxidation (M))AM(Oxidation (M))_		SAAAVDAGM(1)AM(1)		SAAAVDAGM(84)AM(84)	0	0	2		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4230576302	1	1026.42306	1025.41578	1.5447	0.0015855	-0.13518	-0.00013875	1.4095	0.0014468	1026.4239827401432	14.093	0.1678	14.082	14.034	14.202	-0.010672	288	46	1.4482387	0.02669251	1.4467193	293.93924	0	5.4176025						158	8	3	NaN	NaN	NaN	0.0001589	1	9392	9392		84.233	59.832	1	10583			23454	406	13524	13912	18668	18668		36;37			-0.09591009573523479
SAADDLYSM	9	Unmodified	_SAADDLYSM_					0	0	0		ENSG00000214026|ENST00000397298|MRPL23;ENST00000462288.5_1_11:1968785-1977647:+|nuORF	ENSG00000214026|ENST00000397298|MRPL23	ENSG00000214026|ENST00000397298|MRPL23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.3978887372001	1	972.397889	971.390612	2.3599	0.0022948	-2.0476	-0.001991	0.31238	0.00030375	972.3957096209535	23.103	0.07238	23.103	23.103	23.176	0	294	37	1.4446791	0.021359682	1.4446791	293.4331	0	4.33844						62	4	2	NaN	NaN	NaN	0.20577	1	7639	7639		24.961	4.4056	1	4105.7			23455	5977	13525	13913	18669	18669					-0.09622741104442412
SAAEIYNEVL	10	Unmodified	_SAAEIYNEVL_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.5520811933	1	1108.55208	1107.5448	1.9934	0.0022098	0.097391	0.00010796	2.0908	0.0023178	1108.5518253015136	26.481	0.048265	26.481	26.456	26.505	0	93	49	1.5635144	0.028277874	1.5635144	317.02347	0	5.733734						69	3	2	NaN	NaN	NaN	0.10581	1	13173	13173		45.165	14.555	1	7425			23456	3293	13526	13914	18670	18670					-0.00466588347421748
SAAEIYNEVL	10	Unmodified	_SAAEIYNEVL_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.5520811933	1	1108.55208	1107.5448	1.361	0.0015088	-0.42442	-0.00047049	0.93663	0.0010383	1108.551141919228	26.48	0.096506	26.47	26.446	26.542	-0.010645	93	43	1.5635144	0.0247432	1.5619949	317.02347	0	5.017029						113	5	3	NaN	NaN	NaN	0.5358	1	12798	12798		17.97	6.7994	1	8860.6			23457	3293	13526	13914	18671	18671					-0.00466588347421748
SAAEVTEMAH	10	Unmodified	_SAAEVTEMAH_					0	0	0		ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.23458122205	2	523.234581	1044.45461	1.6743	0.00087608	3.2132	0.0016812	4.8875	0.0025573	523.2368278656127	30.945	0.048277	30.94	30.915	30.964	-0.0050716	1311	37	0.83019954	0.022150517	0.8286801	336.91418	0	8.989197						56	3	2	NaN	NaN	NaN	0.76548	1	10175	10175		3.5698	0.35817	1	4070.1			23458	2340	13527	13915	18672	18672					-0.065839609475006
SAAGILDLL	9	Unmodified	_SAAGILDLL_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5087598156	1	872.50876	871.501483	1.6298	0.0014221	-1.7303	-0.0015097	-0.10041	-8.7607E-05	872.506602798934	34.565	0.096489	34.565	34.541	34.638	0	360	58	1.405474	0.033904195	1.405474	285.92722	0	6.8974						159	5	3	NaN	NaN	NaN	0.018156	1	5681	5681		74.332	0	1	19437			23459	5726	13528	13916	18673	18673					0.060592666659431416
SAAGKDWAF	9	Unmodified	_SAAGKDWAF_					0	0	0		nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	nc|ENSG00000160256|Q9NSI2-2|SLX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.72979201789997	2	476.729792	951.445031	1.3254	0.00063187	0.18829	8.9766E-05	1.5137	0.00072163	476.72980221022686	20.285	0.26477	20.271	20.222	20.487	-0.014141	1365	55	0.7969414	0.0332942	0.79542196	323.82828	0	13.528717						406	12	4	NaN	NaN	NaN	0.25424	1	6985	6985		21.85	1.4017	1	107720			23460	4054	13529	13917	18674	18674					-0.03263361170718326
SAAGTHHHP	9	Unmodified	_SAAGTHHHP_					0	0	0			REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.71500762094996	2	457.715008	913.415462	0.34762	0.00015911	-3.8627	-0.001768	-3.5151	-0.0016089	457.7135425736905	35.529	0.14475	35.529	35.481	35.626	0.00053024	1392	85	0.780288	0.051858366	0.77876854	317.2493	0	21.084564						328	7	3	NaN	NaN	NaN	0.61413	1	6169	6169		4.9097	0	1	46529	+		23461	11832	13530	13918	18675	18675					-0.04470880396206667
SAAGTHHHP	9	Unmodified						0	0	0			REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.715008	913.415462	0.44638	0.00020432	-4.9074	-0.0022462	-4.461	-0.0020419	457.7132622755784	35.53	0.16887	35.53	35.482	35.651	0	1395	82	0.7784366	0.050014377	0.7784366	316.49658		20.334839	0.00049464	-0.00055893	-0.00016597	NaN	4.9097	333	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50263	+		23462	11832	13530	13918							-0.04470880396206667
SAAGTHHHP	9	Unmodified						0	0	0			REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	REV__ENST00000359114.8_1_22:38087837-38088059:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	457.715008	913.415462	0.34762	0.00015911	-3.8627	-0.001768	-3.5151	-0.0016089	457.7135425736905	35.529	0.14475	35.529	35.481	35.626	0.00053024	1392	85	0.780288	0.051858366	0.77876854	317.2493		21.084564	-0.00049464	0.00039739	0.00016597	NaN	4.9097	328	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46529	+		23463	11832	13530	13918							-0.04470880396206667
SAAKTGQA	8	Unmodified	_SAAKTGQA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.383893653	1	733.383894	732.376617	1.6624	0.0012192	-5.4588	-0.0040034	-3.7964	-0.0027842	733.3804298955178	27.253	0.28959	27.242	27.194	27.484	-0.010126	576	187	1.2765218	0.111672044	1.2750024	260.45856	0	22.785324						876	13	5	NaN	NaN	NaN	0.80692	1	3714	3714		8.2903	0	1	334170			23464	834	13531	13919	18676	18676					-0.0002760575057436654
SAAKTGQA	8	Unmodified						0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	733.383894	732.376617	1.6505	0.0012104	-5.1342	-0.0037653	-3.4837	-0.0025549	733.3807392590587	27.229	0.2896	27.229	27.157	27.446	0	579	166	1.2747238	0.0990268	1.2747238	260.0917		20.205215	-0.0066315	0.0001514	-0.00013927	NaN	8.2903	862	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339780			23465	834	13531	13919							-0.0002760575057436654
SAALDVEL	8	Unmodified	_SAALDVEL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.4301751436	1	817.430175	816.422899	2.8203	0.0023054	-0.69445	-0.00056766	2.1259	0.0017378	817.4297169862476	25.853	0.21717	25.853	25.805	26.022	0	504	157	1.3196158	0.09335077	1.3196158	268.7416	0	19.011032						586	10	4	NaN	NaN	NaN	0.14443	1	4974	4974		55.494	5.6607	1	247870			23466	4232	13532	13920	18677	18677					0.007344143608520426
SAALDVEL	8	Unmodified	_SAALDVEL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.4301751436	1	817.430175	816.422899	2.6598	0.0021742	-1.2959	-0.0010593	1.3639	0.0011149	817.4290154735206	25.853	0.26549	25.841	25.793	26.059	-0.0116	501	157	1.3214091	0.09336078	1.3198897	269.10678	0	19.013031						630	12	4	NaN	NaN	NaN	0.024916	1	4866	4866		89.521	30.076	1	252710			23467	4232	13532	13920	18678	18678					0.007344143608520426
SAAMVFSAL	9	Unmodified	_SAAMVFSAL_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.4546157551	1	896.454616	895.447339	1.4974	0.0013423	-0.098206	-8.8038E-05	1.3992	0.0012543	896.4545323349256	29.28	0.12064	29.28	29.232	29.353	0	399	58	1.382264	0.033943772	1.382264	281.08856	0	6.9026184						136	6	2	NaN	NaN	NaN	0.055351	1	5994	5994		44.638	5.7206	1	21172			23468	5441	13533	13921	18679	18679					-0.004566487572674305
SAAMVFSAL	9	Unmodified	_SAAMVFSAL_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.4546157551	1	896.454616	895.447339	1.0967	0.00098314	-2.4791	-0.0022224	-1.3824	-0.0012392	896.4534914976978	29.28	0.12064	29.272	29.224	29.344	-0.0077229	396	73	1.3840506	0.04286039	1.3825312	281.45187	0	8.715851						188	6	3	NaN	NaN	NaN	0.043119	1	5879	5879		49.833	13.797	1	24238			23469	5441	13533	13921	18680	18680					-0.004566487572674305
SAAMVFSAL	9	Oxidation (M)	_SAAM(Oxidation (M))VFSAL_		SAAM(1)VFSAL		SAAM(47)VFSAL	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4495303772001	1	912.44953	911.442254	1.8793	0.0017148	-0.40349	-0.00036817	1.4758	0.0013466	912.4491173975729	26.577	0.16895	26.577	26.505	26.674	0	387	58	1.389409	0.03393662	1.389409	282.46646	0	6.8993225						187	8	3	NaN	NaN	NaN	0.04947	1	6245	6245		47.136	20.404	1	19043			23470	5441	13533	13922	18681	18681		566			-0.0170095261988763
SAAMVFSAL	9	Oxidation (M)	_SAAM(Oxidation (M))VFSAL_		SAAM(1)VFSAL		SAAM(42)VFSAL	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4495303772001	1	912.44953	911.442254	1.5046	0.0013729	-1.5793	-0.001441	-0.074661	-6.8125E-05	912.4481091088963	26.577	0.14478	26.566	26.494	26.639	-0.010645	390	64	1.3876231	0.03750491	1.3861036	282.1034	0	7.624756						216	7	3	NaN	NaN	NaN	0.062072	1	6126	6126		41.785	13.996	1	20184			23471	5441	13533	13922	18682	18682		566			-0.0170095261988763
SAAPAEQYL	9	Unmodified	_SAAPAEQYL_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.4625379045	1	949.462538	948.455261	1.5461	0.001468	-0.48964	-0.00046489	1.0565	0.0010031	949.4617791973626	21.272	0.096245	21.258	21.21	21.306	-0.014004	417	46	1.3715409	0.026814818	1.3700215	278.67197	0	5.4482727						101	5	3	NaN	NaN	NaN	0.48181	1	6913	6913		10.36	2.0699	1	6909.8			23472	3137	13534	13923	18683	18683					-0.021027982361488284
SAAPEGVPL	9	Unmodified	_SAAPEGVPL_					0	0	0		ENST00000475328.5_1_2:74649280-74649616:+|nuORF;ENST00000469932.5_1_2:74649280-74650140:+|nuORF;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000475328.5_1_2:74649280-74649616:+|nuORF	ENST00000475328.5_1_2:74649280-74649616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4461595588001	1	840.44616	839.438883	0.87541	0.00073573	-0.23334	-0.00019611	0.64207	0.00053962	840.4458740056485	22.163	0.096491	22.149	22.125	22.222	-0.013731	525	91	1.3070582	0.053798676	1.3055388	266.06342	0	10.951202						189	5	2	NaN	NaN	NaN	0.23112	1	5133	5133		23.334	2.779	1	19903			23473	326	13535	13924	18684	18684					0.01274120597770434
SAAPLQPVL	9	Unmodified	_SAAPLQPVL_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.5247442308001	1	895.524744	894.517468	1.9719	0.0017659	-0.24025	-0.00021515	1.7316	0.0015507	895.5248237373506	25.371	0.072393	25.371	25.346	25.419	0	405	67	1.3786905	0.039322257	1.3786905	280.36627	0	7.99646						98	4	2	NaN	NaN	NaN	0.02857	1	5992	5992		60.982	21.523	1	9849.9			23474	2841	13536	13925	18685	18685					0.06598972902861533
SAAPLQPVL	9	Unmodified	_SAAPLQPVL_					0	0	0		nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	nc|ENSG00000133961|P49757-9|NUMB	nc|ENSG00000133961|P49757-9|NUMB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.5247442308001	1	895.524744	894.517468	1.8948	0.0016968	-0.28955	-0.0002593	1.6052	0.0014375	895.5251964890746	25.394	0.096489	25.382	25.334	25.431	-0.012011	405	52	1.3786905	0.030377269	1.377171	280.36627	0	6.177429						89	5	2	NaN	NaN	NaN	0.032826	1	5877	5877		55.413	13.095	1	9533			23475	2841	13536	13925	18686	18686					0.06598972902861533
SAAPPDGLL	9	Unmodified	_SAAPPDGLL_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.4461595588001	1	840.44616	839.438883	1.9808	0.0016648	-1.1904	-0.0010005	0.79039	0.00066428	840.4457931782789	23.803	0.43387	23.803	23.634	24.068	0	471	103	1.3393306	0.060887337	1.3393306	272.63272	0	12.394165						887	19	3	NaN	NaN	NaN	0.036546	1	5265	5265		52.624	5.1425	1	124930			23476	2649	13537	13926	18687	18687					0.01274120597770434
SAAQRGKA	8	Unmodified	_SAAQRGKA_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3;TMEM181-HP1BP3|1|fusion	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4373262070001	1	788.437326	787.43005	1.4908	0.0011754	2.107	0.0016612	3.5978	0.0028366	788.4389882469832	29.569	0.12067	29.562	29.538	29.659	-0.0070667	477	52	1.3357477	0.030458331	1.3342283	272.19254	0	6.2066345						89	6	2	NaN	NaN	NaN	0.84455	1	4501	4501		2.7852	0.32367	1	7774.4			23477	2534	13538	13927	18688	18688					0.027831917519506533
SAARDDAVF	9	Unmodified	_SAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.23015615864995	2	476.230156	950.445759	1.5448	0.00073567	0.77425	0.00036872	2.319	0.0011044	476.2303121124646	16.491	0.21574	16.478	16.406	16.621	-0.012995	1335	64	0.8154261	0.03880751	0.81390667	331.3443	0	15.769226						335	10	4	NaN	NaN	NaN	0.12104	1	6962	6962		32.778	17.315	1	75249			23478	1865	13539	13928	18689	18689					-0.03144566521677916
SAASPHAGQES	11	Unmodified	_SAASPHAGQES_					0	0	0		ENSG00000242220|ENST00000300258|TCP10L	ENSG00000242220|ENST00000300258|TCP10L	ENSG00000242220|ENST00000300258|TCP10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2334271291	2	521.233427	1040.4523	2.0783	0.0010833	1.3105	0.0006831	3.3888	0.0017664	521.2339043070843	13.613	0.072014	13.613	13.565	13.637	0	1293	37	0.84127116	0.022136092	0.84127116	341.4244	0	8.983795						65	4	2	NaN	NaN	NaN	0.6875	1	10219	10219		8.2775	1.8476	1	8861.9			23479	6076	13540	13929	18690	18690					-0.06630673360950823
SACESNLDP	9	Unmodified	_SACESNLDP_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.1923820563499	2	468.192382	934.370211	1.3568	0.00063523	-3.1504	-0.001475	-1.7936	-0.00083976	468.1906995382103	28.339	0.09647	28.339	28.315	28.412	0	1380	34	0.7876915	0.020356357	0.7876915	320.15298	0	8.273743						63	5	2	NaN	NaN	NaN	0.44082	1	6708	6708		12.049	0.87837	1	4229	+		23480	8862	13541	13930	18691	18691					-0.09959911764269691
SACMGYPCCQY	11	Unmodified	_SACMGYPCCQY_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1225.4144835538	1	1225.41448	1224.40721	2.1631	0.0026506	-5.3706	-0.0065812	-3.2075	-0.0039305	1225.407212303269	12.532	0.048033	12.532	12.532	12.58	0	885	61	1.090315	0.036337137	1.090315	220.81601	0	7.3591766						68	3	2	NaN	NaN	NaN	0.77466	1	17073	17073		1.1768	0	1	4648.5	+		23481	9559	13542	13931	18692	18692					-0.19602022805997876
SACMGYPCCQY	11	Unmodified						0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1225.41448	1224.40721	2.1631	0.0026506	-5.3706	-0.0065812	-3.2075	-0.0039305	1225.407212303269	12.532	0.048033	12.532	12.532	12.58	0	885	61	1.090315	0.036337137	1.090315	220.81601		7.3591766	0.027477	-0.00075821	-0.00014915	NaN	1.1768	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4648.5	+		23482	9559	13542	13931							-0.19602022805997876
SADASVNTL	9	Unmodified	_SADASVNTL_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4261523982001	1	877.426152	876.418876	2.0622	0.0018094	-0.71489	-0.00062726	1.3473	0.0011821	877.4258094383375	17.981	0.19193	17.981	17.933	18.125	0	432	49	1.3625998	0.028619409	1.3625998	277.18082	0	5.8217773						177	9	2	NaN	NaN	NaN	0.042816	1	5746	5746		49.961	12.659	1	16340			23483	1657	13543	13932	18693	18693					-0.024276751328443424
SADASVNTL	9	Unmodified	_SADASVNTL_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4261523982001	1	877.426152	876.418876	1.7959	0.0015757	-1.0351	-0.00090823	0.76076	0.00066751	877.4249489644666	17.978	0.144	17.964	17.94	18.084	-0.013786	429	61	1.3643885	0.03578186	1.362869	277.54465	0	7.2787476						155	7	2	NaN	NaN	NaN	3.9799E-05	1	5620	5620		126.58	54.151	1	15253			23484	1657	13543	13932	18694	18694					-0.024276751328443424
SADFNPDFVF	10	Unmodified	_SADFNPDFVF_					0	0	0		ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1158.5102163785998	1	1158.51022	1157.50294	2.1417	0.0024812	-0.64205	-0.00074382	1.4997	0.0017374	1158.509654086187	31.839	0.096529	31.839	31.815	31.911	0	192	46	1.5050892	0.026599169	1.5050892	305.01477	0	5.3904724						112	5	3	NaN	NaN	NaN	0.63397	1	15057	15057		12.57	4.9821	1	8589.1			23485	251	13544	13933	18695	18695					-0.06951144035951984
SADGGALFQR	10	Unmodified	_SADGGALFQR_					0	0	0		ENST00000358157.2_1_9:91606576-91616015:+|nuORF	ENST00000358157.2_1_9:91606576-91616015:+|nuORF	ENST00000358157.2_1_9:91606576-91616015:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.25670526015	2	511.256705	1020.49886	1.5133	0.00077369	0.64352	0.000329	2.1568	0.0011027	511.2569774722894	15.34	0.095882	15.328	15.28	15.376	-0.012202	1317	40	0.8265074	0.024000287	0.82498795	335.51825	0	9.742828						86	5	2	NaN	NaN	NaN	0.74182	1	9192	9192		5.1889	1.6157	1	6596.3			23486	6583	13545	13934	18696	18696					-0.010571887390028678
SADGGALFQR	10	Unmodified						0	0	0		ENST00000358157.2_1_9:91606576-91616015:+|nuORF	ENST00000358157.2_1_9:91606576-91616015:+|nuORF	ENST00000358157.2_1_9:91606576-91616015:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.256705	1020.49886	1.8855	0.00096397	-2.1862	-0.0011177	-0.30073	-0.00015375	511.25584527455385	15.366	0.072092	15.366	15.294	15.366	0	1320	43	0.824661	0.025847852	0.824661	334.76874		10.492859	0.018891	-0.001549	-0.00016347	NaN	5.1889	70	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4885.6			23487	6583	13545	13934							-0.010571887390028678
SADILMLVL	9	Unmodified	_SADILMLVL_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5590808266	1	974.559081	973.551804	1.8844	0.0018364	-0.41163	-0.00040115	1.4728	0.0014353	974.5591841130906	34.492	0.21708	34.491	34.419	34.636	-0.0006485	177	154	1.5139546	0.090514064	1.5124352	307.49426	0	18.384033						896	10	5	NaN	NaN	NaN	0.030391	1	7566	7566		58.599	5.8409	1	351420	+		23488	10397	13546	13935	18697	18697					0.06397052999443531
SADILMLVL	9	Unmodified						0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.559081	973.551804	1.8844	0.0018364	-0.41163	-0.00040115	1.4728	0.0014353	974.5591841130906	34.492	0.21708	34.491	34.419	34.636	-0.0006485	177	154	1.5139546	0.090514064	1.5124352	307.49426		18.384033	-0.00095991	0.00018785	-0.00075972	NaN	58.599	896	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351420	+		23489	10397	13546	13935							0.06397052999443531
SADITFATL	9	Unmodified	_SADITFATL_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4829389956	1	938.482939	937.475663	1.6322	0.0015318	-1.7525	-0.0016447	-0.12034	-0.00011294	938.4809555705367	28.242	0.096512	28.233	28.209	28.305	-0.0089779	294	67	1.4446791	0.039171934	1.4431597	293.5815	0	7.9603577						130	5	2	NaN	NaN	NaN	0.41766	1	6625	6625		13.003	0	1	12745			23490	834	13547	13936	18698	18698					0.004423724236630733
SADLRADAM	9	Unmodified	_SADLRADAM_					0	0	0		ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25910858-25911257:+|nuORF	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.22401653574997	2	475.224017	948.43348	1.8336	0.00087136	-2.0286	-0.00096404	-0.19504	-9.2685E-05	475.22328673378684	16.107	0.11991	16.094	16.047	16.166	-0.012611	1398	40	0.77658504	0.024073124	0.7750656	315.57098	0	9.782288						65	6	2	NaN	NaN	NaN	0.061945	1	6911	6911		41.839	20.004	1	5549.2			23491	3581	13548	13937	18699	18699					-0.042799262563676166
SADMSHVAL	9	Unmodified	_SADMSHVAL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.72110970604996	2	465.72111	929.427666	1.8294	0.00085201	-0.83621	-0.00038944	0.99322	0.00046256	465.72052653374635	18.676	0.21592	18.676	18.628	18.844	0	1368	61	0.7950918	0.036993504	0.7950918	323.1857	0	15.036987						409	10	5	NaN	NaN	NaN	0.062072	1	6576	6576		41.785	16.823	1	74851			23492	2315	13549	13938	18700	18700					-0.039870247680369175
SADMSHVAL	9	Unmodified	_SADMSHVAL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.72110970604996	2	465.72111	929.427666	1.0467	0.00048745	-0.54605	-0.00025431	0.5006	0.00023314	465.7204229491036	18.698	0.21601	18.684	18.636	18.852	-0.014059	1368	58	0.7950918	0.03514576	0.79357237	323.1857	0	14.285889						373	10	6	NaN	NaN	NaN	0.04947	1	6443	6443		47.136	22.175	1	73032			23493	2315	13549	13938	18701	18701					-0.039870247680369175
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(58)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.7185670171	2	473.718567	945.422581	1.4569	0.00069017	-2.7521	-0.0013037	-1.2951	-0.00061353	473.71732296945635	15.294	0.24024	15.294	15.198	15.438	0	1377	58	0.7895419	0.03514576	0.7895419	320.8507	0	14.282379						291	11	4	NaN	NaN	NaN	0.030669	1	6941	6941		58.235	42.773	1	67768			23494	2315	13549	13939	18702	18702		267			-0.052313286306457485
SADMSHVAL	9	Oxidation (M)	_SADM(Oxidation (M))SHVAL_		SADM(1)SHVAL		SADM(67)SHVAL	0	0	1		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.7185670171	2	473.718567	945.422581	0.79959	0.00037878	-1.6541	-0.0007836	-0.85455	-0.00040482	473.71783974707205	15.268	0.38379	15.256	15.184	15.568	-0.012202	1377	52	0.7895419	0.031449556	0.78802246	320.85068	0	12.780365						411	17	4	NaN	NaN	NaN	0.023828	1	6804	6804		67.154	41.039	1	84727			23495	2315	13549	13939	18703	18703		267			-0.052313286306457485
SADPEEYDL	9	Unmodified	_SADPEEYDL_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000471238.5_1_7:75583310-75608939:+|nuORF;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4262119777	1	1038.42621	1037.41894	1.7677	0.0018356	-0.26024	-0.00027024	1.5075	0.0015654	1038.426082508801	21.464	0.21696	21.464	21.416	21.633	0	282	103	1.4517976	0.06049335	1.4517976	294.6163	0	12.276062						509	10	4	NaN	NaN	NaN	0.011206	1	10083	10083		89.256	58.465	1	99990			23496	2549	13550	13940	18704	18704					-0.09827719923509903
SADPEEYDL	9	Unmodified	_SADPEEYDL_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000471238.5_1_7:75583310-75608939:+|nuORF;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4262119777	1	1038.42621	1037.41894	1.6038	0.0016654	-0.063561	-6.6003E-05	1.5402	0.0015994	1038.4259271005876	21.464	0.28904	21.45	21.402	21.691	-0.014006	282	94	1.4517976	0.055146933	1.4502782	294.6163	0	11.191101						543	13	4	NaN	NaN	NaN	0.032826	1	9878	9878		55.413	27.624	1	103710			23497	2549	13550	13940	18705	18705					-0.09827719923509903
SADPGILVL	9	Unmodified	_SADPGILVL_					0	0	0		nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.5087598156	1	884.50876	883.501483	1.2389	0.0010958	0.59021	0.00052205	1.8291	0.0016178	884.5085593899317	29.811	0.14475	29.803	29.755	29.9	-0.0070648	366	91	1.4019053	0.053547144	1.4003859	285.14102	0	10.891205						220	7	3	NaN	NaN	NaN	0.043119	1	5727	5727		49.833	10.915	1	33339			23498	2464	13551	13941	18706	18706					0.055072666659384595
SADPGVFVL	9	Unmodified	_SADPGVFVL_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4774596872002	1	904.47746	903.470183	1.5957	0.0014433	-0.43593	-0.00039428	1.1598	0.001049	904.4764863069438	29.474	0.096581	29.474	29.449	29.546	0	360	55	1.405474	0.03210771	1.405474	285.77	0	6.528351						155	5	3	NaN	NaN	NaN	0.12945	1	6145	6145		31.561	8.2266	1	17779			23499	3628	13552	13942	18707	18707					0.014586936318664812
SADPGVFVL	9	Unmodified	_SADPGVFVL_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4774596872002	1	904.47746	903.470183	1.5699	0.00142	-0.27175	-0.00024579	1.2982	0.0011742	904.4771598216381	29.473	0.14476	29.466	29.417	29.562	-0.0070667	360	55	1.405474	0.03210771	1.4039545	285.77	0	6.528351						202	7	3	NaN	NaN	NaN	0.056143	1	6020	6020		44.302	14.704	1	21723			23500	3628	13552	13942	18708	18708					0.014586936318664812
SADPNVVDL	9	Unmodified	_SADPNVVDL_					0	0	0		ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4574525265999	1	929.457453	928.450176	2.6774	0.0024886	-0.29863	-0.00027756	2.3788	0.002211	929.457225143742	23.152	0.26526	23.152	23.079	23.345	0	357	121	1.407258	0.07141137	1.407258	286.01718	0	14.513947						601	12	3	NaN	NaN	NaN	0.015029	1	6553	6553		78.289	33.651	1	199140			23501	5242	13553	13943	18709	18709					-0.016911020987663505
SADPNVVDL	9	Unmodified	_SADPNVVDL_					0	0	0		ENST00000567143.1_1_16:58436992-58437325:+|nuORF;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4574525265999	1	929.457453	928.450176	1.7722	0.0016472	-0.25884	-0.00024058	1.5134	0.0014066	929.4570682557868	23.151	0.24122	23.138	23.09	23.331	-0.013294	354	136	1.4090419	0.08030784	1.4075224	286.37973	0	16.322144						581	11	3	NaN	NaN	NaN	0.013093	1	6426	6426		83.529	36.047	1	203550			23502	5242	13553	13943	18710	18710					-0.016911020987663505
SADPSGAFRM	10	Unmodified	_SADPSGAFRM_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7372910865	2	519.737291	1037.46003	1.8063	0.00093882	0.4425	0.00022999	2.2488	0.0011688	519.7376242520769	19.084	0.16786	19.084	19.012	19.18	0	1323	61	0.8228144	0.0369215	0.8228144	333.94644	0	14.984924						206	8	3	NaN	NaN	NaN	0.47445	1	10090	10090		20.513	2.733	1	27550			23503	5661	13554	13944	18711	18711					-0.05720237365039793
SADPSGAFRM	10	Unmodified	_SADPSGAFRM_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.7372910865	2	519.737291	1037.46003	1.4873	0.00077301	-0.13643	-7.0906E-05	1.3509	0.0007021	519.7374241082732	19.106	0.14423	19.092	19.044	19.188	-0.014141	1323	73	0.8228144	0.044296205	0.82129496	333.94644	0	17.978027						179	7	3	NaN	NaN	NaN	0.1159	1	9882	9882		43.776	21.941	1	23250			23504	5661	13554	13944	18712	18712					-0.05720237365039793
SADPSSGISL	10	Unmodified	_SADPSSGISL_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4523671487001	1	933.452367	932.445091	1.3994	0.0013063	-9.7885	-0.0091371	-8.3891	-0.0078308	933.4432989265533	22.235	0.16886	22.222	22.149	22.318	-0.013731	363	49	1.4036897	0.028543234	1.4021703	285.27414	0	5.8009033						140	8	2	NaN	NaN	NaN	0.5917	1	6508	6508		15.463	1.7256	1	8525			23505	2897	13555	13945	18713	18713					-0.023834059613704994
SADPYAITV	9	Unmodified	_SADPYAITV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4672889313999	1	936.467289	935.460012	1.6545	0.0015494	2.5084	0.002349	4.1629	0.0038984	936.4703367432995	24.502	0.096487	24.489	24.465	24.561	-0.012747	336	58	1.419741	0.0338645	1.4182216	288.52267	0	6.882019						149	5	3	NaN	NaN	NaN	0.04947	1	6598	6598		47.136	26.58	1	17596			23506	952	13556	13946	18714	18714					-0.010299140933852868
SADPYAITVF	10	Unmodified	_SADPYAITVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5357028475999	1	1083.5357	1082.52843	1.9144	0.0020743	-0.41528	-0.00044997	1.4991	0.0016243	1083.535557373341	30.053	0.12071	30.053	30.029	30.149	0	123	100	1.5458313	0.058375716	1.5458313	313.5272	0	11.839813						291	6	4	NaN	NaN	NaN	0.088985	1	12089	12089		47.482	15.029	1	43903			23507	952	13557	13947	18715	18715					-0.009536695135238915
SADPYAITVF	10	Unmodified	_SADPYAITVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.5357028475999	1	1083.5357	1082.52843	1.1966	0.0012966	0.10092	0.00010935	1.2975	0.0014059	1083.534866298142	30.052	0.14481	30.045	30.021	30.166	-0.0064106	123	94	1.5458313	0.054849386	1.5443119	313.5272	0	11.124603						263	7	3	NaN	NaN	NaN	0.068403	1	11774	11774		50.315	10.856	1	43089			23508	952	13557	13947	18716	18716					-0.009536695135238915
SADPYEREDL	10	Unmodified	_SADPYEREDL_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7672997362001	2	597.7673	1193.52005	1.4843	0.0008873	1.4172	0.00084713	2.9015	0.0017344	597.7679683517619	16.997	0.047966	16.997	16.973	17.021	0	1230	37	0.8799654	0.022085905	0.8799654	356.52945	0	8.948395						51	3	2	NaN	NaN	NaN	0.57785	1	16247	16247		12.307	1.1364	1	7873.9			23509	5334	13558	13948	18717	18717					-0.06897268220791375
SADPYEREDL	10	Unmodified	_SADPYEREDL_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7672997362001	2	597.7673	1193.52005	1.461	0.00087335	-0.52722	-0.00031515	0.9338	0.00055819	597.7660789315682	16.994	0.04797	16.981	16.981	17.029	-0.013294	1230	43	0.8799654	0.02576691	0.878446	356.52945	0	10.439789						62	3	2	NaN	NaN	NaN	0.70538	1	15624	15624		7.6826	4.8974	1	8151.7			23510	5334	13558	13948	18718	18718					-0.06897268220791375
SADQTLCMD	9	Unmodified	_SADQTLCMD_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.19406746554995	2	492.194067	982.373582	1.6553	0.00081472	-3.6101	-0.0017769	-1.9548	-0.00096216	492.19233063589553	23.151	0.072403	23.138	23.114	23.186	-0.013294	1383	34	0.7858409	0.020356357	0.7843215	319.17453	0	8.267883						59	4	2	NaN	NaN	NaN	0.51576	1	7788	7788		8.962	0.71716	1	4266.6			23511	3373	13559	13949	18719	18719					-0.11830984981907022
SADSLEHVL	9	Unmodified	_SADSLEHVL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7456390473499	2	485.745639	969.476725	1.2789	0.00062123	-2.5589	-0.001243	-1.28	-0.00062174	485.7446420464833	20.983	0.09627	20.969	20.945	21.041	-0.014088	1338	37	0.81357855	0.022172093	0.8120591	330.50104	0	9.006989						81	5	2	NaN	NaN	NaN	0.25448	1	7439	7439		21.835	2.7167	1	10419			23512	1759	13560	13950	18720	18720					-0.00923413207442536
SADSLEHVL	9	Unmodified						0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.745639	969.476725	1.525	0.00074077	-3.7842	-0.0018382	-2.2592	-0.0010974	485.74476406116935	20.983	0.096163	20.983	20.935	21.031	0	1335	34	0.8154261	0.02032113	0.8154261	331.2516		8.255066	0.0069498	-0.0006552	0.0016835	NaN	21.835	96	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7953			23513	1759	13560	13950							-0.00923413207442536
SADSSVIL	8	Unmodified	_SADSSVIL_					0	0	0			REV__ENST00000378023.8_3_6:24865614-24865674:-|nuORF	REV__ENST00000378023.8_3_6:24865614-24865674:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.4145250794	1	791.414525	790.407249	2.3029	0.0018225	1.7921	0.0014183	4.0949	0.0032408	791.4159392811808	23.223	0.096518	23.21	23.186	23.283	-0.013294	531	40	1.3034686	0.023333907	1.3019491	265.5977	0	4.7545776						75	5	2	NaN	NaN	NaN	0.27293	1	4546	4546		44.247	8.2106	1	5190	+		23514	11947	13561	13951	18721	18721					0.0036612784381304664
SADTPEASL	9	Unmodified	_SADTPEASL_					0	0	0		nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.410167983	1	890.410168	889.402892	2.5279	0.0022508	-0.1038	-9.2423E-05	2.4241	0.0021584	890.4098806384106	18.556	0.071993	18.556	18.532	18.604	0	438	40	1.359022	0.023256898	1.359022	276.39062	0	4.7298584						69	4	2	NaN	NaN	NaN	0.043119	1	5926	5926		49.833	13.246	1	5373.7			23515	5865	13562	13952	18722	18722					-0.046233813697654114
SADVAAVVM	9	Unmodified	_SADVAAVVM_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	862.433880313	1	862.43388	861.426604	1.9294	0.001664	-0.84539	-0.00072909	1.084	0.00093486	862.4339598980615	23.803	0.12044	23.803	23.754	23.875	0	417	82	1.3715409	0.04828739	1.3715409	279.07465	0	9.825287						192	6	3	NaN	NaN	NaN	0.078597	1	5550	5550		38.918	12.186	1	24153			23516	3783	13563	13953	18723	18723					-0.009652391369286306
SADVAAVVM	9	Unmodified	_SADVAAVVM_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	862.433880313	1	862.43388	861.426604	1.5529	0.0013393	0.10209	8.8042E-05	1.655	0.0014274	862.4336672878657	23.802	0.096462	23.789	23.765	23.861	-0.013048	414	64	1.3733286	0.0375489	1.3718091	279.4384	0	7.640259						169	5	3	NaN	NaN	NaN	0.094712	1	5416	5416		36.586	6.9881	1	23207			23517	3783	13563	13953	18724	18724					-0.009652391369286306
SADVAAVVM	9	Oxidation (M)	_SADVAAVVM(Oxidation (M))_		SADVAAVVM(1)		SADVAAVVM(72)	0	0	1		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	878.4287949351001	1	878.428795	877.421518	1.7833	0.0015665	-0.81883	-0.00071928	0.96446	0.00084721	878.4283169754099	19.444	0.11999	19.444	19.42	19.54	0	402	79	1.3804773	0.04647672	1.3804773	280.8125	0	9.454132						263	6	4	NaN	NaN	NaN	0.020004	1	5765	5765		71.993	42.395	1	33509			23518	3783	13563	13954	18725	18725		418			-0.022095429995488303
SADVAAVVM	9	Oxidation (M)	_SADVAAVVM(Oxidation (M))_		SADVAAVVM(1)		SADVAAVVM(78)	0	0	1		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	878.4287949351001	1	878.428795	877.421518	1.3821	0.001214	0.26518	0.00023294	1.6472	0.001447	878.4291922100268	19.442	0.14436	19.428	19.404	19.549	-0.014141	402	73	1.3804773	0.042896986	1.3789579	280.8125	0	8.725983						236	7	4	NaN	NaN	NaN	0.014943	1	5641	5641		78.398	46.837	1	29557			23519	3783	13563	13954	18726	18726		418			-0.022095429995488303
SAEAGSPAM	9	Unmodified	_SAEAGSPAM_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.3505446140999	1	820.350545	819.343268	1.2434	0.00102	0.75725	0.00062121	2.0006	0.0016412	820.3515963818462	14.836	0.1922	14.824	14.728	14.92	-0.011737	555	49	1.2891023	0.028741598	1.2875829	262.51196	0	5.8529053						179	9	2	NaN	NaN	NaN	0.0072287	1	4898	4898		98.041	33.491	1	17037			23520	2249	13564	13955	18727	18727					-0.0736297558479464
SAEDLEKAL	9	Unmodified	_SAEDLEKAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.2532969039499	2	488.253297	974.492041	1.8102	0.00088386	-2.0622	-0.0010069	-0.25199	-0.00012304	488.2528442660436	20.045	0.096102	20.045	20.021	20.117	0	1365	34	0.7969414	0.020343125	0.7969414	323.7192	0	8.263428						69	5	2	NaN	NaN	NaN	0.17328	1	7738	7738		27.046	10.188	1	8789.5			23521	1986	13565	13956	18728	18728					0.00377453589749166
SAEDLEKAL	9	Unmodified	_SAEDLEKAL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.2532969039499	2	488.253297	974.492041	1.5374	0.00075063	-1.8414	-0.00089908	-0.30406	-0.00014846	488.25247005881124	20.044	0.096273	20.03	20.006	20.102	-0.014141	1365	34	0.7969414	0.020343125	0.79542196	323.7192	0	8.263428						85	5	3	NaN	NaN	NaN	0.077759	1	7579	7579		39.039	18.484	1	8265.8			23522	1986	13565	13956	18729	18729					0.00377453589749166
SAEDLSLFL	9	Unmodified	_SAEDLSLFL_					0	0	0		ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	ENSG00000155629|ENST00000339364|PIK3AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5091537461	1	994.509154	993.501877	1.12	0.0011139	1.4615	0.0014534	2.5815	0.0025673	994.5113662157564	31.308	0.072392	31.308	31.284	31.356	0	240	58	1.4766881	0.03374958	1.4766881	299.84113	0	6.852844						86	4	2	NaN	NaN	NaN	0.47587	1	8341	8341		10.605	2.3147	1	7875.2			23523	3882	13566	13957	18730	18730					0.004866415951369163
SAEELDAQL	9	Unmodified	_SAEELDAQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.462931835	1	975.462932	974.455655	1.9829	0.0019342	0.030306	2.9562E-05	2.0132	0.0019638	975.4632696226142	22.019	0.16874	22.019	21.97	22.139	0	285	58	1.4500183	0.033810496	1.4500183	294.50458	0	6.867035						160	8	2	NaN	NaN	NaN	0.048656	1	7731	7731		47.482	2.3166	1	20966			23524	5318	13567	13958	18731	18731					-0.03259423306951703
SAEELDAQL	9	Unmodified	_SAEELDAQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.462931835	1	975.462932	974.455655	1.4829	0.0014465	-1.5907	-0.0015516	-0.10778	-0.00010514	975.4627295772825	21.994	0.14447	21.98	21.956	22.101	-0.013897	285	79	1.4500183	0.0462842	1.4484988	294.50458	0	9.400513						257	7	4	NaN	NaN	NaN	0.084037	1	7575	7575		38.131	2.8343	1	24399			23525	5318	13567	13958	18732	18732					-0.03259423306951703
SAELCGSQ	8	Unmodified	_SAELCGSQ_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.67108550825003	2	397.671086	793.327618	1.0813	0.00043002	1.2865	0.00051159	2.3678	0.00094161	397.6717974138223	31.017	0.19312	31.012	30.94	31.133	-0.0050716	1347	43	0.8080346	0.025878608	0.8065152	329.2661	0	10.545288						144	9	3	NaN	NaN	NaN	0.83211	1	4579	4579		4.9097	0	1	17285			23526	3156	13568	13959	18733	18733					-0.07731262101822267
SAEPSPTVM	9	Unmodified	_SAEPSPTVM_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4237095572001	1	918.42371	917.416433	2.1076	0.0019357	-0.49944	-0.00045869	1.6082	0.001477	918.4233652646866	18.94	0.19195	18.94	18.892	19.084	0	414	91	1.3733286	0.053649783	1.3733286	279.1703	0	10.905914						518	9	3	NaN	NaN	NaN	8.7755E-05	1	6363	6363		123.66	73.825	1	92330			23527	7916	13569	13960	18734	18734					-0.04557846862155657
SAEPSPTVM	9	Unmodified	_SAEPSPTVM_					0	0	0		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4237095572001	1	918.42371	917.416433	1.7106	0.001571	-0.22213	-0.00020401	1.4884	0.001367	918.4236357255097	18.962	0.24027	18.948	18.876	19.116	-0.014059	414	88	1.3733286	0.051858783	1.3718091	279.1703	0	10.54184						546	11	4	NaN	NaN	NaN	0.0072287	1	6229	6229		98.041	53.739	1	91101			23528	7916	13569	13960	18735	18735					-0.04557846862155657
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(64)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4186241793002	1	934.418624	933.411348	1.8241	0.0017045	-1.6784	-0.0015683	0.14567	0.00013612	934.4175654506198	15.174	0.31231	15.174	15.053	15.366	0	396	118	1.3840506	0.06972623	1.3840506	281.27856	0	14.170349						641	14	4	NaN	NaN	NaN	0.026295	1	6674	6674		63.958	31.505	1	105670			23529	7916	13569	13961	18736	18736		641			-0.05802150724764488
SAEPSPTVM	9	Oxidation (M)	_SAEPSPTVM(Oxidation (M))_		SAEPSPTVM(1)		SAEPSPTVM(87)	0	0	1		nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4186241793002	1	934.418624	933.411348	1.6882	0.0015774	-0.79328	-0.00074126	0.89488	0.00083619	934.4185920835093	15.148	0.28804	15.136	15.064	15.352	-0.012201	393	109	1.3858368	0.06435239	1.3843174	281.6416	0	13.078247						613	13	4	NaN	NaN	NaN	0.011942	1	6533	6533		87.021	37.188	1	101420			23530	7916	13569	13961	18737	18737		641			-0.05802150724764488
SAESATTVF	9	Unmodified	_SAESATTVF_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4309034250999	1	912.430903	911.423627	2.2292	0.002034	-0.60348	-0.00055064	1.6257	0.0014834	912.430351795609	23.224	0.24117	23.224	23.2	23.441	0	399	61	1.382264	0.03573215	1.382264	281.01398	0	7.2643433						289	11	3	NaN	NaN	NaN	0.20577	1	6241	6241		24.961	0	1	38787	+		23531	10564	13570	13962	18738	18738					-0.03562790990099529
SAEVHPISL	9	Unmodified	_SAEVHPISL_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.75854945735006	2	476.758549	951.502546	1.5664	0.00074678	-2.8697	-0.0013682	-1.3033	-0.00062137	476.7573216891687	20.021	0.12017	20.021	19.972	20.093	0	1344	64	0.8098828	0.03880322	0.8098828	329.0866	0	15.767273						116	6	3	NaN	NaN	NaN	0.042816	1	7123	7123		49.961	15.523	1	13103			23532	3224	13571	13963	18739	18739					0.024854810348642786
SAEVHPISL	9	Unmodified	_SAEVHPISL_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.75854945735006	2	476.758549	951.502546	1.2312	0.00058699	-1.9533	-0.00093125	-0.72207	-0.00034425	476.7572844446952	20.02	0.096294	20.006	19.982	20.078	-0.014141	1347	61	0.8080346	0.03695345	0.8065152	328.33563	0	15.015625						120	5	3	NaN	NaN	NaN	0.23112	1	6991	6991		23.334	4.2161	1	12900			23533	3224	13571	13963	18740	18740					0.024854810348642786
SAEVTPPVL	9	Unmodified	_SAEVTPPVL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5036744376999	1	912.503674	911.496398	1.6471	0.001503	0.28577	0.00026076	1.9329	0.0017638	912.5034513055809	24.671	0.14472	24.671	24.623	24.767	0	366	94	1.4019053	0.055323243	1.4019053	285.0067	0	11.247162						291	7	3	NaN	NaN	NaN	0.032764	1	6254	6254		55.494	16.576	1	32084			23534	3902	13572	13964	18741	18741					0.037109628033249464
SAEVTPPVL	9	Unmodified	_SAEVTPPVL_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5036744376999	1	912.503674	911.496398	1.4979	0.0013668	0.55201	0.00050371	2.0499	0.0018705	912.5040649259138	24.695	0.16879	24.682	24.61	24.779	-0.012392	363	85	1.4036897	0.049977303	1.4021703	285.36948	0	10.16037						272	8	3	NaN	NaN	NaN	0.094712	1	6134	6134		36.586	9.8549	1	28614			23535	3902	13572	13964	18742	18742					0.037109628033249464
SAFELQTIL	9	Unmodified	_SAFELQTIL_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.28185737815005	2	511.281857	1020.54916	0.56972	0.00029129	-1.8118	-0.00092632	-1.242	-0.00063503	511.2814362060733	31.958	0.072386	31.954	31.93	32.003	-0.0037613	1287	34	0.8449601	0.020285964	0.84344065	343.00888	0	8.235016						99	4	3	NaN	NaN	NaN	0.25448	1	9205	9205		21.835	2.7167	1	9774.1			23536	4189	13573	13965	18743	18743					0.03970920866152028
SAFEPEGVL	9	Unmodified	_SAFEPEGVL_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4672889314	1	948.467289	947.460012	2.1013	0.0019931	-2.1131	-0.0020042	-0.01173	-1.1126E-05	948.4644675354424	25.95	0.12067	25.95	25.901	26.022	0	282	106	1.4517976	0.062328935	1.4517976	294.9831	0	12.664276						151	6	3	NaN	NaN	NaN	0.23112	1	7013	7013		23.334	12.729	1	13152			23537	238	13574	13966	18744	18744					-0.015819140933786002
SAFEPEGVL	9	Unmodified						0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.467289	947.460012	2.1888	0.002076	-0.38062	-0.000361	1.8082	0.001715	948.4663738473174	25.949	0.072386	25.938	25.914	25.986	-0.0116	282	103	1.4517976	0.060551286	1.4502782	294.98306		12.303101	-0.0059092	0.00093124	-0.00075972	NaN	23.334	151	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12963			23538	238	13574	13966							-0.015819140933786002
SAFGFPVIL	9	Unmodified	_SAFGFPVIL_					0	0	0		ENSG00000213625|ENST00000371065|LEPROT;ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENSG00000213625|ENST00000371065|LEPROT	ENSG00000213625|ENST00000371065|LEPROT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.5345806356	1	950.534581	949.527304	1.5669	0.0014894	-0.59588	-0.00056641	0.97104	0.00092301	950.5342298818238	36.374	0.19295	36.374	36.326	36.519	0	264	94	1.4624695	0.055094242	1.4624695	297.14218	0	11.19397						329	9	3	NaN	NaN	NaN	0.17818	1	7083	7083		26.732	8.9326	1	41864			23539	5963	13575	13967	18745	18745					0.05052160908223868
SAFGFPVIL	9	Unmodified						0	0	0		ENSG00000213625|ENST00000371065|LEPROT;ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENSG00000213625|ENST00000371065|LEPROT	ENSG00000213625|ENST00000371065|LEPROT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	950.534581	949.527304	1.6105	0.0015308	0.48453	0.00046056	2.095	0.0019914	950.5350913179951	36.372	0.24086	36.374	36.302	36.543	0.0016747	261	91	1.4642475	0.05331421	1.462728	297.50342		10.832306	-5.5241E-05	0.0005562	0.00012928	NaN	26.732	317	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40551			23540	5963	13575	13967							0.05052160908223868
SAFIESTAL	9	Unmodified	_SAFIESTAL_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.4829389956	1	938.482939	937.475663	1.9513	0.0018313	-1.202	-0.0011281	0.74934	0.00070324	938.4824315335491	26.239	0.14481	26.239	26.215	26.36	0	339	61	1.4179583	0.03565252	1.4179583	288.15143	0	7.2451477						184	7	2	NaN	NaN	NaN	0.27442	1	6767	6767		20.555	1.4371	1	29553	+		23541	8363	13576	13968	18746	18746					0.004423724236630733
SAFMFGLMNW	10	Unmodified	_SAFMFGLMNW_					0	0	0			REV__ENST00000266673.9_1_12:72080331-72080400:+|nuORF	REV__ENST00000266673.9_1_12:72080331-72080400:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2699124833501	2	602.269912	1202.52527	1.4427	0.00086888	3.3464	0.0020154	4.7891	0.0028843	602.270513651963	21.754	0.12035	21.754	21.73	21.85	0	1191	67	0.90387505	0.040434003	0.90387505	366.1854	0	16.380981						142	6	3	NaN	NaN	NaN	0.68669	1	16537	16537		8.962	1.3744	1	17217	+		23542	11577	13577	13969	18747	18747					-0.0678895916350939
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.27182400810005	2	503.271824	1004.5291	1.8453	0.00092869	-0.61492	-0.00030947	1.2304	0.00061922	503.2711924339691	21.826	0.16867	21.826	21.778	21.946	0	1311	79	0.83019954	0.04798758	0.83019954	337.08838	0	19.484558						325	8	3	NaN	NaN	NaN	0.2345	1	8766	8766		23.118	2.5621	1	41524			23543	2053	13578	13970	18748	18748					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.27182400810005	2	503.271824	1004.5291	1.1977	0.00060275	-0.67975	-0.0003421	0.5179	0.00026065	503.2710869781264	21.85	0.21673	21.836	21.764	21.98	-0.013895	1305	73	0.83389086	0.04428661	0.8323714	338.5872	0	17.981812						290	10	4	NaN	NaN	NaN	0.25548	1	8594	8594		21.771	5.1869	1	36342			23544	2053	13578	13970	18749	18749					0.027011699261947797
SAFPGIDEAM	10	Oxidation (M)	_SAFPGIDEAM(Oxidation (M))_		SAFPGIDEAM(1)		SAFPGIDEAM(40)	0	0	1		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.4557379670998	1	1053.45574	1052.44846	2.401	0.0025293	4.8678	0.005128	7.2688	0.0076574	1053.4620725795353	23.393	0.096487	23.393	23.369	23.465	0	231	94	1.4820169	0.05507672	1.4820169	300.69238	0	11.174744						218	5	3	NaN	NaN	NaN	0.14619	1	10719	10719		40.154	18.319	1	17056			23545	5772	13579	13971	18750	18750		589			-0.07566479179035923
SAFPLSWAF	9	Unmodified	_SAFPLSWAF_					0	0	0		ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5090941665999	1	1025.50909	1024.50182	1.8425	0.0018895	1.004	0.0010296	2.8465	0.0029191	1025.5105678065343	36.205	0.12059	36.205	36.157	36.278	0	180	67	1.5121819	0.03901422	1.5121819	306.92096	0	7.918518						178	6	2	NaN	NaN	NaN	0.04947	1	9550	9550		47.136	23.285	1	14112			23546	7163	13580	13972	18751	18751					-0.009453136141928553
SAFPLSWAF	9	Unmodified	_SAFPLSWAF_					0	0	0		ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	ENST00000472564.1_1_13:113960786-113974926:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.5090941665999	1	1025.50909	1024.50182	1.5965	0.0016372	0.68794	0.00070549	2.2844	0.0023427	1025.5091221342036	36.204	0.096436	36.205	36.157	36.253	0.0011024	174	73	1.5157272	0.042560935	1.5142077	307.64053	0	8.638397						190	5	3	NaN	NaN	NaN	0.074859	1	9368	9368		39.459	14.498	1	13827			23547	7163	13580	13972	18752	18752					-0.009453136141928553
SAFSSWEEL	9	Unmodified	_SAFSSWEEL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3470835-3470958:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.4680172129	1	1055.46802	1054.46074	1.9962	0.0021069	1.7099	0.0018048	3.7061	0.0039117	1055.4697260861358	28.677	0.19304	28.677	28.581	28.774	0	192	55	1.5050892	0.03192401	1.5050892	305.3661	0	6.477051						186	9	3	NaN	NaN	NaN	0.032764	1	10821	10821		55.494	10.855	1	17233			23548	5307	13581	13973	18753	18753					-0.06431119444323485
SAFTSDPAL	9	Unmodified	_SAFTSDPAL_					0	0	0		ENST00000454465.1_1_2:87398353-87423749:+|nuORF;ENSG00000153107|ENST00000341068|ANAPC1	ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENST00000454465.1_1_2:87398353-87423749:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	908.435988803	1	908.435989	907.428712	1.8996	0.0017257	-3.1424	-0.0028547	-1.2428	-0.001129	908.4332150887594	22.766	0.096363	22.752	22.728	22.824	-0.01354	387	67	1.389409	0.039276123	1.3878895	282.48508	0	7.9853516						131	5	2	NaN	NaN	NaN	0.074859	1	6073	6073		39.459	7.8977	1	12702			23549	3797	13582	13974	18754	18754					-0.02870487127472643
SAFTSDPAL	9	Unmodified						0	0	0		ENST00000454465.1_1_2:87398353-87423749:+|nuORF;ENSG00000153107|ENST00000341068|ANAPC1	ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENST00000454465.1_1_2:87398353-87423749:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	908.435989	907.428712	2.0982	0.0019061	-2.9872	-0.0027137	-0.88902	-0.00080762	908.4333981970192	22.766	0.072371	22.766	22.718	22.79	0	387	58	1.389409	0.03392577	1.389409	282.48508		6.8975525	0.0070764	5.3935E-05	0.00075972	NaN	39.459	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10795			23550	3797	13582	13974							-0.02870487127472643
SAGAQPSM	8	Unmodified	_SAGAQPSM_					0	0	0			REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.3294152415001	1	748.329415	747.322139	2.3278	0.0017419	4.0348	0.0030194	6.3626	0.0047613	748.3325387738338	18.556	0.26383	18.556	18.484	18.748	0	579	109	1.2747238	0.064786315	1.2747238	259.9961	0	13.213989						440	12	3	NaN	NaN	NaN	0.78967	1	3999	3999		10.605	5.1391	1	61386	+		23551	10196	13583	13975	18755	18755					-0.061629408936369146
SAGAQPSM	8	Unmodified	_SAGAQPSM_					0	0	0			REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	748.3294152415001	1	748.329415	747.322139	2.1179	0.0015849	4.3494	0.0032548	6.4674	0.0048397	748.3327514838697	18.578	0.28792	18.564	18.468	18.756	-0.01395	576	103	1.2765218	0.06118059	1.2750024	260.3628	0	12.478531						420	13	3	NaN	NaN	NaN	0.8439	1	3923	3923		3.1533	0	1	59960	+		23552	10196	13583	13975	18756	18756					-0.061629408936369146
SAGAQPSM	8	Unmodified						0	0	0			REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	748.329415	747.322139	2.3278	0.0017419	4.0348	0.0030194	6.3626	0.0047613	748.3325387738338	18.556	0.26383	18.556	18.484	18.748	0	579	109	1.2747238	0.064786315	1.2747238	259.9961		13.213989	-0.0036797	-0.00010952	-0.00013927	NaN	10.605	440	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61386	+		23553	10196	13583	13975							-0.061629408936369146
SAGAQPSM	8	Unmodified						0	0	0			REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	748.329415	747.322139	2.1179	0.0015849	4.3494	0.0032548	6.4674	0.0048397	748.3327514838697	18.578	0.28792	18.564	18.468	18.756	-0.01395	576	103	1.2765218	0.06118059	1.2750024	260.3628		12.478531	0.0036797	0.0001259	0.00013927	NaN	10.605	420	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59960	+		23554	10196	13583	13975							-0.061629408936369146
SAGGAGLM	8	Unmodified	_SAGGAGLM_					0	0	0			REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3130368958001	1	663.313037	662.30576	0.83776	0.00055569	7.554	0.0050107	8.3917	0.0055664	663.3178026878778	31.525	0.096544	31.525	31.477	31.573	0	705	46	1.1990347	0.027091146	1.1990347	245.12317	0	5.5383606						88	5	2	NaN	NaN	NaN	0.82332	1	2368	2368		6.0903	2.5171	1	7343.4	+		23555	12894	13584	13976	18757	18757					-0.03890022059738385
SAGGPVTVR	9	Unmodified	_SAGGPVTVR_					0	0	0		ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.2377842255	2	422.237784	842.461016	1.3519	0.00057082	-2.3232	-0.00098095	-0.97132	-0.00041013	422.2368557566813	13.06	0.33626	13.06	12.964	13.3	0	1437	64	0.7524962	0.03895074	0.7524962	306.33112	0	15.856323						397	15	2	NaN	NaN	NaN	0.064504	1	5302	5302		40.957	15.996	1	68197			23556	6714	13585	13977	18758	18758					0.03348345066183356
SAGGPVTVR	9	Unmodified	_SAGGPVTVR_					0	0	0		ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	ENST00000378119.8_1_6:24720562-24720727:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.2377842255	2	422.237784	842.461016	0.93602	0.00039522	-1.0433	-0.0004405	-0.10723	-4.5279E-05	422.2373194279424	13.086	0.31149	13.076	12.957	13.268	-0.009469	1434	64	0.75435036	0.03895074	0.7528309	307.08594	0	15.856323						363	14	2	NaN	NaN	NaN	0.13999	1	5171	5171		30.035	8.2004	1	64832			23557	6714	13585	13977	18759	18759					0.03348345066183356
SAGGWAGG	8	Unmodified	_SAGGWAGG_					0	0	0			REV__ENST00000275364.7_1_7:2883623-2883950:-|nuORF	REV__ENST00000275364.7_1_7:2883623-2883950:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.2892649863002	1	662.289265	661.281989	0.67713	0.00044846	7.3283	0.0048534	8.0054	0.0053019	662.2944841433291	45.5	0.11976	45.512	45.44	45.56	0.011345	714	58	1.1936152	0.034341216	1.1920958	244.0229	0	7.0207214						113	6	2	NaN	NaN	NaN	0.84876	1	2276	2276		0.39566	0	1	5981.3	+		23558	11595	13586	13978	18760	18760					-0.062201195018928956
SAGLAFSL	8	Unmodified	_SAGLAFSL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.4141311489001	1	765.414131	764.406855	1.5613	0.001195	-0.21874	-0.00016742	1.3425	0.0010276	765.4146843443905	28.846	0.072409	28.846	28.822	28.894	0	540	118	1.2980826	0.070083976	1.2980826	264.65378	0	14.288788						145	4	3	NaN	NaN	NaN	0.202	1	4277	4277		49.833	10.915	1	26422			23559	3665	13587	13979	18761	18761					0.015227529146159213
SAGLAFSL	8	Unmodified	_SAGLAFSL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4141311489001	1	765.414131	764.406855	1.317	0.001008	-0.09236	-7.0694E-05	1.2246	0.00093735	765.4143823775763	28.845	0.04825	28.837	28.813	28.861	-0.0083504	537	115	1.2998781	0.06829059	1.2983587	265.01987	0	13.923157						155	3	3	NaN	NaN	NaN	0.35353	1	4203	4203		38.918	7.3568	1	25995			23560	3665	13587	13979	18762	18762					0.015227529146159213
SAGLFFYFYL	10	Unmodified	_SAGLFFYFYL_					0	0	0			REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.8743422644667	3	409.874342	1226.6012	1.6343	0.00066984	-3.1789	-0.001303	-1.5446	-0.00063311	409.8730872727927	18.988	0.071949	18.988	18.964	19.036	0	1383	37	0.7858409	0.022208154	0.7858409	477.43896	0	13.492584						62	4	2	NaN	NaN	NaN	0.72631	1	17152	17152		2.9701	0	1	6410.1	+		23561	13285	13588	13980	18763	18763					-0.0030391572008738876
SAGPADAEM	9	Unmodified	_SAGPADAEM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.3454592362	1	848.345459	847.338183	2.0058	0.0017016	-0.487	-0.00041314	1.5188	0.0012885	848.3454508099201	16.11	0.31199	16.11	16.038	16.35	0	522	79	1.3088527	0.046640396	1.3088527	266.3887	0	9.492645						550	14	4	NaN	NaN	NaN	0.028349	1	5352	5352		61.271	24.685	1	87997			23562	3799	13589	13981	18764	18764					-0.09159279447408153
SAGPADAEM	9	Unmodified	_SAGPADAEM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.3454592362	1	848.345459	847.338183	1.8922	0.0016052	-0.94751	-0.00080382	0.94467	0.0008014	848.3450308976428	16.107	0.33563	16.094	16.023	16.358	-0.012611	522	91	1.3088527	0.053827405	1.3073332	266.3887	0	10.955414						581	15	4	NaN	NaN	NaN	0.04947	1	5221	5221		47.136	26.687	1	90401			23563	3799	13589	13981	18765	18765					-0.09159279447408153
SAGPADAEM	9	Oxidation (M)	_SAGPADAEM(Oxidation (M))_		SAGPADAEM(1)		SAGPADAEM(93)	0	0	1		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.3403738583	1	864.340374	863.333097	1.5653	0.0013529	-0.50418	-0.00043578	1.0611	0.00091714	864.3398171291657	12.94	0.48039	12.94	12.724	13.204	0	528	70	1.3052634	0.04127419	1.3052634	265.5796	0	8.39801						560	21	2	NaN	NaN	NaN	0.0094682	1	5570	5570		93.472	59.033	1	94293			23564	3799	13589	13982	18766	18766		420			-0.10403583310016984
SAGPADAEM	9	Oxidation (M)	_SAGPADAEM(Oxidation (M))_		SAGPADAEM(1)		SAGPADAEM(100)	0	0	1		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	864.3403738583	1	864.340374	863.333097	1.1972	0.0010348	0.086759	7.4989E-05	1.284	0.0011098	864.3403351779056	12.894	0.57533	12.885	12.717	13.292	-0.00947	525	73	1.3070582	0.04307103	1.3055388	265.94476	0	8.763611						526	25	2	NaN	NaN	NaN	0.0040938	1	5435	5435		104.71	54.878	1	93476			23565	3799	13589	13982	18767	18767		420			-0.10403583310016984
SAGPAQQLR	9	Unmodified	_SAGPAQQLR_					0	0	0		ENST00000423674.5_1_2:10443024-10443183:+|nuORF	ENST00000423674.5_1_2:10443024-10443183:+|nuORF	ENST00000423674.5_1_2:10443024-10443183:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.25396560595004	2	464.253966	926.493378	0.69647	0.00032334	-0.7203	-0.0003344	-0.023829	-1.1063E-05	464.25430850545246	12.87	0.14391	12.861	12.789	12.933	-0.00947	1362	31	0.79879075	0.018494785	0.7972713	324.70422	0	7.518036						82	7	2	NaN	NaN	NaN	0.55027	1	6394	6394		7.5404	1.45	1	5842			23566	6931	13590	13983	18768	18768					0.027191324691898444
SAGPFEVNM	9	Unmodified	_SAGPFEVNM_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.4240439082001	1	951.424044	950.416767	2.0154	0.0019175	6.8313	0.0064995	8.8467	0.0084169	951.4316619936134	25.467	0.19296	25.467	25.395	25.588	0	354	88	1.4090419	0.05170989	1.4090419	286.28296	0	10.506195						229	9	2	NaN	NaN	NaN	0.064504	1	7091	7091		40.957	10.921	1	22823			23567	7185	13591	13984	18769	18769					-0.06042427142301676
SAGPFEVNM	9	Oxidation (M)	_SAGPFEVNM(Oxidation (M))_		SAGPFEVNM(1)		SAGPFEVNM(79)	0	0	1		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.4189585303002	1	967.418959	966.411682	1.4502	0.0014029	0.0030891	2.9884E-06	1.4533	0.0014059	967.4187912462546	20.766	0.16868	20.766	20.67	20.838	0	354	76	1.4090419	0.044567943	1.4090419	286.2153	0	9.0529785						178	8	2	NaN	NaN	NaN	0.01452	1	7517	7517		79.199	41.896	1	13005			23568	7185	13591	13985	18770	18770		634			-0.07286731004910507
SAGPFEVNM	9	Oxidation (M)	_SAGPFEVNM(Oxidation (M))_		SAGPFEVNM(1)		SAGPFEVNM(72)	0	0	1		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.4189585303002	1	967.418959	966.411682	0.96264	0.00093128	-0.36538	-0.00035348	0.59726	0.0005778	967.4189555085507	20.766	0.16855	20.752	20.68	20.849	-0.014086	354	43	1.4090419	0.024970055	1.4075224	286.2153	0	5.072113						142	8	2	NaN	NaN	NaN	0.01966	1	7371	7371		72.428	30.111	1	11552			23569	7185	13591	13985	18771	18771		634			-0.07286731004910507
SAGPGAEGP	9	Unmodified	_SAGPGAEGP_					0	0	0			REV__nc|ENSG00000179403|Q6PCB0-2|VWA1	REV__nc|ENSG00000179403|Q6PCB0-2|VWA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3366091094001	1	742.336609	741.329333	1.9238	0.0014281	5.631	0.0041801	7.5548	0.0056082	742.3403163679883	25.298	0.19296	25.286	25.214	25.407	-0.012011	603	55	1.2603331	0.032396555	1.2588136	257.09833	0	6.608658						211	9	3	NaN	NaN	NaN	0.47587	1	3853	3853		10.605	0	1	22215	+		23570	10807	13592	13986	18772	18772					-0.051678850215580496
SAGPQPGGI	9	Unmodified	_SAGPQPGGI_					0	0	0		ENST00000578839.5_1_17:61562212-61574724:+|nuORF	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	ENST00000578839.5_1_17:61562212-61574724:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.3995437172001	1	783.399544	782.392267	1.3726	0.0010753	4.2991	0.0033679	5.6718	0.0044433	783.402513265928	30.221	0.19303	30.214	30.166	30.359	-0.0064106	486	112	1.3303722	0.066369414	1.3288528	271.127	0	13.52597						428	9	4	NaN	NaN	NaN	0.39244	1	4441	4441		14.042	0.30454	1	93137			23571	7674	13593	13987	18773	18773					-0.007633192335219974
SAGPSPCP	8	Unmodified	_SAGPSPCP_					0	0	0		ENST00000576916.5_2_16:3534964-3535735:+|nuORF	ENST00000576916.5_2_16:3534964-3535735:+|nuORF	ENST00000576916.5_2_16:3534964-3535735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3079515179	1	715.307952	714.300675	1.1628	0.00083173	6.2467	0.0044683	7.4094	0.0053	715.3124085488053	26.697	0.12066	26.687	26.663	26.783	-0.010645	669	46	1.2206948	0.027059317	1.2191753	249.18346	0	5.5236816						89	6	2	NaN	NaN	NaN	0.82332	1	3428	3428		6.0903	0	1	7213.6			23572	7662	13594	13988	18774	18774					-0.06790325922361262
SAGSSSVK	8	Unmodified	_SAGSSSVK_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3679092378001	1	722.367909	721.360633	1.8581	0.0013422	6.1628	0.0044518	8.0209	0.005794	722.3719813085771	26.07	0.1931	26.07	26.022	26.215	0	630	85	1.2441287	0.050437808	1.2441287	253.92029	0	10.294098						226	9	3	NaN	NaN	NaN	0.81251	1	3620	3620		7.5404	0	1	40740			23573	5883	13595	13989	18775	18775					-0.011193119874747026
SAGSSSVK	8	Unmodified						0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.367909	721.360633	1.9264	0.0013916	4.779	0.0034522	6.7054	0.0048438	722.3711138798258	26.07	0.19307	26.059	26.011	26.204	-0.011137	627	82	1.24593	0.048654675	1.2444105	254.28792		9.9301605	-0.005674	-0.00037285	0.00014091	NaN	7.5404	214	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36542			23574	5883	13595	13989							-0.011193119874747026
SAHDQSLVL	9	Unmodified	_SAHDQSLVL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.25363125495	2	485.253631	968.49271	2.1479	0.0010423	-2.5894	-0.0012565	-0.44155	-0.00021427	485.25180553704655	18.916	0.21594	18.916	18.868	19.084	0	1287	43	0.8449601	0.025819898	0.8449601	343.2541	0	10.488983						255	10	3	NaN	NaN	NaN	0.060816	1	7566	7566		42.318	14.529	1	41132			23575	4223	13596	13990	18776	18776					0.007202930294738508
SAHDQSLVL	9	Unmodified	_SAHDQSLVL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.25363125495	2	485.253631	968.49271	1.8105	0.00087857	-1.1837	-0.00057442	0.62678	0.00030415	485.25310101350135	18.938	0.21622	18.924	18.876	19.092	-0.014059	1287	43	0.8449601	0.025819898	0.84344065	343.2541	0	10.489014						241	10	3	NaN	NaN	NaN	0.19268	1	7418	7418		25.801	5.3523	1	42125			23576	4223	13596	13990	18777	18777					0.007202930294738508
SAHECYDDEI	10	Unmodified	_SAHECYDDEI_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1;nc|ENSG00000125864|Q12934-2|BFSP1;nc|ENSG00000125864|Q12934-3|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.22441046625	2	591.22441	1180.43427	1.2067	0.00071342	-7.1757	-0.0042424	-5.969	-0.003529	591.2204776157297	22.958	0.19277	22.945	22.896	23.089	-0.01354	1242	37	0.87260187	0.022095501	0.8710824	353.59082	0	8.9534						210	9	4	NaN	NaN	NaN	0.76892	1	15247	15247		3.2116	1.9698	1	19299			23577	2479	13597	13991	18778	18778					-0.14873176397986754
SAHECYDDEI	10	Unmodified						0	0	0		ENSG00000125864|ENST00000377873|BFSP1;nc|ENSG00000125864|Q12934-2|BFSP1;nc|ENSG00000125864|Q12934-3|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.22441	1180.43427	1.8249	0.0010789	-7.5551	-0.0044668	-5.7302	-0.0033878	591.2204621599726	22.983	0.19256	22.983	22.911	23.103	0	1242	40	0.87260187	0.02393806	0.87260187	353.59082		9.700043	0.019182	-0.00019376	0.00075972	NaN	3.2116	197	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18447			23578	2479	13597	13991							-0.14873176397986754
SAHGALVP	8	Unmodified	_SAHGALVP_					0	0	0		ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	ENSG00000110665|ENST00000381153|C11orf21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.2084954698	2	376.208495	750.402438	2.6159	0.00098411	-2.1761	-0.00081868	0.43972	0.00016543	376.2078789154064	25.588	0.048285	25.576	25.528	25.576	-0.0116	1443	34	0.7487872	0.02040279	0.7472678	305.41937	0	8.321991						41	3	2	NaN	NaN	NaN	0.80071	1	3988	3988		9.1232	0	1	3865.4			23579	1770	13598	13992	18779	18779					0.01725288491718402
SAHLFEVEL	9	Unmodified	_SAHLFEVEL_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7716568326	2	522.771657	1043.52876	1.6166	0.00084509	-2.144	-0.0011208	-0.5274	-0.00027571	522.770709467899	26.529	0.12068	26.529	26.481	26.601	0	1269	73	0.8560222	0.04425788	0.8560222	347.39767	0	17.96109						227	6	3	NaN	NaN	NaN	0.25448	1	10353	10353		21.835	2.7167	1	29909			23580	3482	13599	13993	18780	18780					0.008737502063240754
SAHLFEVEL	9	Unmodified	_SAHLFEVEL_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7716568326	2	522.771657	1043.52876	1.2317	0.00064392	-2.9152	-0.001524	-1.6835	-0.00088007	522.7708424984955	26.553	0.16891	26.542	26.47	26.639	-0.010645	1269	70	0.8560222	0.042406917	0.85450274	347.39767	0	17.20993						244	8	3	NaN	NaN	NaN	0.31737	1	10148	10148		17.799	2.6236	1	37382			23581	3482	13599	13993	18781	18781					0.008737502063240754
SAHSAGVGAI	10	Unmodified	_SAHSAGVGAI_					0	0	0		nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	nc|ENSG00000186350|P19793-2|RXRA	nc|ENSG00000186350|P19793-2|RXRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.22741650445	2	435.227417	868.44028	0.79794	0.00034729	-5.6585	-0.0024627	-4.8606	-0.0021154	435.2252187342486	29.328	0.12067	29.32	29.272	29.393	-0.0077209	1410	46	0.76917666	0.027785778	0.7676573	312.9715	0	11.305817						136	6	3	NaN	NaN	NaN	0.68669	1	5501	5501		8.962	0	1	18030			23582	5463	13600	13994	18782	18782					0.0007975468652148265
SAIAEPSSL	9	Unmodified	_SAIAEPSSL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.4516388672001	1	874.451639	873.444362	1.2796	0.0011189	0.61161	0.00053482	1.8912	0.0016538	874.4518515316648	20.646	0.09635	20.646	20.622	20.718	0	453	46	1.3500742	0.02685213	1.3500742	274.64728	0	5.462555						78	5	2	NaN	NaN	NaN	0.060816	1	5716	5716		42.318	9.8648	1	5749.8			23583	6077	13601	13995	18783	18783					0.0025779938957839477
SAIAEPSSL	9	Unmodified	_SAIAEPSSL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.4516388672001	1	874.451639	873.444362	1.0528	0.00092061	1.4132	0.0012358	2.466	0.0021564	874.4527254786485	20.646	0.072392	20.632	20.608	20.68	-0.014086	453	52	1.3500742	0.030429125	1.3485547	274.64728	0	6.1902466						87	4	2	NaN	NaN	NaN	0.060816	1	5578	5578		42.318	14.529	1	7006.1			23584	6077	13601	13995	18784	18784					0.0025779938957839477
SAIAFDIIAL	10	Unmodified	_SAIAFDIIAL_					0	0	0		ENSG00000112378|ENST00000421351|PERP;ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.592823796	1	1033.59282	1032.58555	1.4417	0.0014902	-0.21715	-0.00022444	1.2246	0.0012657	1033.5931654929761	36.229	0.12051	36.229	36.205	36.326	0	174	58	1.5157272	0.03367436	1.5157272	307.60855	0	6.834015						167	6	3	NaN	NaN	NaN	0.12649	1	9898	9898		42.318	13.422	1	24363			23585	1871	13602	13996	18785	18785					0.07055797762859584
SAIAFDIIAL	10	Unmodified	_SAIAFDIIAL_					0	0	0		ENSG00000112378|ENST00000421351|PERP;ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.592823796	1	1033.59282	1032.58555	1.4339	0.001482	-0.68104	-0.00070392	0.75284	0.00077813	1033.592734199761	36.252	0.12057	36.253	36.181	36.301	0.0011024	171	67	1.5174994	0.03898108	1.51598	307.96823	0	7.9110107						182	6	3	NaN	NaN	NaN	0.070973	1	9693	9693		49.961	17.509	1	22316			23586	1871	13602	13996	18786	18786					0.07055797762859584
SAIAVFLVL	9	Unmodified	_SAIAVFLVL_					0	0	0		ENST00000532345.1_1_11:62556776-62556899:+|nuORF;ENSG00000185475|ENST00000333449|TMEM179B	ENST00000532345.1_1_11:62556776-62556899:+|nuORF	ENST00000532345.1_1_11:62556776-62556899:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5815308282	1	932.581531	931.574254	0.9669	0.00090171	-0.10943	-0.00010205	0.85747	0.00079966	932.5808586071465	37.867	0.096203	37.867	37.819	37.915	0	258	52	1.4660252	0.030219316	1.4660252	297.9467	0	6.1416016						127	5	3	NaN	NaN	NaN	0.056143	1	6645	6645		44.302	2.8423	1	11565			23587	5416	13603	13997	18787	18787					0.10573020459366944
SAIDRIFTL	9	Unmodified	_SAIDRIFTL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2952991044001	2	518.295299	1034.57605	1.9195	0.00099489	-1.2059	-0.000625	0.71368	0.0003699	518.2946153263902	28.17	0.12064	28.17	28.122	28.243	0	1257	43	0.86339295	0.025791943	0.86339295	350.42838	0	10.468292						154	6	4	NaN	NaN	NaN	0.034172	1	9990	9990		53.652	25.156	1	22957			23588	5313	13604	13998	18788	18788					0.060140294773418645
SAIDRIFTL	9	Unmodified	_SAIDRIFTL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2952991044001	2	518.295299	1034.57605	1.0147	0.00052591	-1.5207	-0.00078818	-0.50603	-0.00026227	518.2944194149571	28.194	0.14481	28.185	28.137	28.281	-0.0089779	1254	43	0.8652351	0.025789201	0.86371565	351.1761	0	10.467163						112	7	2	NaN	NaN	NaN	0.039271	1	9778	9778		51.467	25.352	1	23365			23589	5313	13604	13998	18789	18789					0.060140294773418645
SAIEDVQLL	9	Unmodified	_SAIEDVQLL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5357028476002	1	987.535703	986.528426	2.2063	0.0021788	-0.85497	-0.00084431	1.3514	0.0013345	987.5352541218882	28.17	0.096523	28.17	28.122	28.219	0	219	67	1.4891195	0.039055586	1.4891195	302.39456	0	7.9309998						140	5	2	NaN	NaN	NaN	0.04947	1	8104	8104		47.136	0	1	20535			23590	3816	13605	13999	18790	18790					0.03462330486490828
SAIEDVQLL	9	Unmodified	_SAIEDVQLL_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5357028476002	1	987.535703	986.528426	1.3728	0.0013557	1.43	0.0014122	2.8028	0.0027678	987.5374791688276	28.17	0.12067	28.161	28.137	28.257	-0.0089779	216	76	1.4908947	0.044383764	1.4893752	302.75504	0	9.01297						166	6	2	NaN	NaN	NaN	0.054111	1	7938	7938		45.165	9.8684	1	20859			23591	3816	13605	13999	18791	18791					0.03462330486490828
SAIEESIGL	9	Unmodified	_SAIEESIGL_					0	0	0		ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4778536177001	1	918.477854	917.470577	1.9086	0.001753	0.22641	0.00020795	2.135	0.0019609	918.4779362020656	25.443	0.14477	25.443	25.395	25.539	0	339	61	1.4179583	0.035663843	1.4179583	288.24234	0	7.249756						123	7	2	NaN	NaN	NaN	0.062072	1	6368	6368		41.785	16.823	1	12996			23592	31	13606	14000	18792	18792					0.008540685610569199
SAIEESIGL	9	Unmodified						0	0	0		ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	918.477854	917.470577	1.8968	0.0017422	-4.2964	-0.0039461	-2.3996	-0.002204	918.4729176402516	25.443	0.096512	25.431	25.407	25.503	-0.012011	339	58	1.4179583	0.033878922	1.4164388	288.24237		6.8868713	-0.0061619	-0.0027229	-0.00075972	NaN	41.785	111	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12633			23593	31	13606	14000							0.008540685610569199
SAIELPDYL	9	Unmodified	_SAIELPDYL_					0	0	0		nc|ENSG00000118985|O00472-2|ELL2;ENSG00000118985|ENST00000237853|ELL2	nc|ENSG00000118985|O00472-2|ELL2	nc|ENSG00000118985|O00472-2|ELL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5248038102999	1	1020.5248	1019.51753	2.2284	0.0022741	2.5612	0.0026138	4.7896	0.004888	1020.5287745118453	30.584	0.2655	30.584	30.487	30.753	0	159	103	1.5245869	0.060269117	1.5245869	309.45883	0	12.233337						399	12	3	NaN	NaN	NaN	0.036546	1	9347	9347		52.624	16.038	1	37198			23594	2199	13607	14001	18793	18793					0.008549281121759122
SAIELPDYL	9	Unmodified	_SAIELPDYL_					0	0	0		nc|ENSG00000118985|O00472-2|ELL2;ENSG00000118985|ENST00000237853|ELL2	nc|ENSG00000118985|O00472-2|ELL2	nc|ENSG00000118985|O00472-2|ELL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5248038102999	1	1020.5248	1019.51753	1.38	0.0014083	2.6711	0.002726	4.0511	0.0041343	1020.5285810505708	30.583	0.14476	30.577	30.48	30.625	-0.0057545	153	94	1.5281296	0.05494249	1.5266101	310.17792	0	11.152161						279	7	3	NaN	NaN	NaN	0.036546	1	9159	9159		52.624	13.165	1	30194			23595	2199	13607	14001	18794	18794					0.008549281121759122
SAIFPDVAL	9	Unmodified	_SAIFPDVAL_					0	0	0		nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	932.5087598156	1	932.50876	931.501483	1.5185	0.001416	0.31071	0.00028974	1.8292	0.0017057	932.5090827349162	31.718	0.28962	31.718	31.621	31.911	0	300	136	1.4411188	0.08018839	1.4411188	292.8852	0	16.297028						485	13	3	NaN	NaN	NaN	0.028349	1	6638	6638		61.271	21.812	1	225740			23596	3430	13608	14002	18795	18795					0.032992666659424685
SAIFPDVAL	9	Unmodified	_SAIFPDVAL_					0	0	0		nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5087598156	1	932.50876	931.501483	0.96322	0.00089821	0.32725	0.00030517	1.2905	0.0012034	932.5091677749807	31.717	0.16896	31.712	31.64	31.809	-0.0044155	300	175	1.4411188	0.10341442	1.4395994	292.8852	0	21.017395						402	8	3	NaN	NaN	NaN	0.025843	1	6500	6500		64.55	25.632	1	217140			23597	3430	13608	14002	18796	18796					0.032992666659424685
SAIGLSIAL	9	Unmodified	_SAIGLSIAL_					0	0	0		ENST00000586392.1_1_19:34884173-34884275:+|nuORF;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENST00000586392.1_1_19:34884173-34884275:+|nuORF	ENST00000586392.1_1_19:34884173-34884275:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.5138451935001	1	844.513845	843.506569	1.3125	0.0011084	-0.27861	-0.00023529	1.0339	0.00087313	844.5136936022615	30.679	0.24128	30.673	30.601	30.842	-0.0057545	390	172	1.3876231	0.101951	1.3861036	282.44116	0	20.751434						890	11	5	NaN	NaN	NaN	0.018156	1	5186	5186		74.332	0	1	416430		+	23598	218	13609	14003	18797	18797					0.07855570528568023
SAIHILDVL	9	Unmodified	_SAIHILDVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.79239227470003	2	490.792392	979.570232	1.6971	0.00083294	-2.3439	-0.0011504	-0.64675	-0.00031742	490.791337289147	29.015	0.12068	29.015	28.967	29.087	0	1290	73	0.84311575	0.044248343	0.84311575	342.45062	0	17.972443						313	6	4	NaN	NaN	NaN	0.094712	1	7879	7879		36.586	5.7954	1	79325			23599	3074	13610	14004	18798	18798					0.07962930965663872
SAIHILDVL	9	Unmodified	_SAIHILDVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.79239227470003	2	490.792392	979.570232	0.84048	0.0004125	-1.0382	-0.00050953	-0.19771	-9.7034E-05	490.7917888959889	29.038	0.21721	29.031	28.982	29.2	-0.0077229	1287	73	0.8449601	0.044243515	0.84344065	343.19974	0	17.97049						338	10	4	NaN	NaN	NaN	0.25448	1	7715	7715		21.835	1.2795	1	72213			23600	3074	13610	14004	18799	18799					0.07962930965663872
SAIIDHIF	8	Unmodified	_SAIIDHIF_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.25036028450006	2	458.25036	914.486168	1.4283	0.00065454	-4.0472	-0.0018546	-2.6189	-0.0012001	458.24808862065345	25.612	0.096567	25.612	25.588	25.684	0	1332	40	0.8172735	0.024018466	0.8172735	332.2811	0	9.765259						78	5	2	NaN	NaN	NaN	0.75561	1	6311	6311		15.175	4.0847	1	9727.2			23601	3771	13611	14005	18800	18800					0.025503998687668172
SAIIFETPL	9	Unmodified	_SAIIFETPL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5506246303001	1	990.550625	989.543348	1.5309	0.0015164	-0.80612	-0.0007985	0.72476	0.00071791	990.5502965764097	31.091	0.16898	31.091	31.042	31.211	0	273	118	1.4571344	0.06933427	1.4571344	295.88696	0	14.079071						380	8	4	NaN	NaN	NaN	0.030391	1	8201	8201		58.599	0	1	91892			23602	1977	13612	14006	18801	18801					0.04815822354487409
SAIIFETPL	9	Unmodified	_SAIIFETPL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5506246303001	1	990.550625	989.543348	1.5864	0.0015715	-1.4694	-0.0014555	0.11707	0.00011596	990.5491143276405	31.089	0.19308	31.084	30.964	31.157	-0.0050716	270	124	1.458913	0.072882056	1.4573935	296.2481	0	14.7994995						483	9	4	NaN	NaN	NaN	0.012648	1	8033	8033		84.879	26.28	1	104440			23603	1977	13612	14006	18802	18802					0.04815822354487409
SAIITEEML	9	Unmodified	_SAIITEEML_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5125245645	1	1006.51252	1005.50525	1.709	0.0017201	-2.1676	-0.0021817	-0.45862	-0.00046161	1006.5103810460433	27.567	0.12067	27.567	27.519	27.639	0	222	133	1.4873441	0.07810295	1.4873441	301.9555	0	15.856201						399	6	3	NaN	NaN	NaN	0.018156	1	8795	8795		74.332	9.782	1	66731			23604	6143	13613	14007	18803	18803					0.002715683775022626
SAIITEEML	9	Oxidation (M)	_SAIITEEM(Oxidation (M))L_		SAIITEEM(1)L		SAIITEEM(120)L	0	0	1		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5074391866001	1	1022.50744	1021.50016	2.463	0.0025184	-4.7853	-0.004893	-2.3224	-0.0023746	1022.5000448458699	23.682	0.024084	23.682	23.658	23.682	0	231	49	1.4820169	0.028416157	1.4820169	300.81027	0	5.7677307						71	2	3	NaN	NaN	NaN	0.00020136	1	9429	9429		116.74	25.307	1	10292			23605	6143	13613	14008	18804	18804		624			-0.00972735485117937
SAIITEEML	9	Oxidation (M)	_SAIITEEM(Oxidation (M))L_		SAIITEEM(1)L		SAIITEEM(120)L	0	0	1		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5074391866001	1	1022.50744	1021.50016	2.4266	0.0024812	-2.1195	-0.0021672	0.30706	0.00031397	1022.5060489420438	23.73	0.072308	23.73	23.73	23.803	0	234	49	1.4802408	0.028419137	1.4802408	300.44977	0	5.7683105						122	4	3	NaN	NaN	NaN	0.00020136	1	9431	9431		116.74	25.307	1	15894			23606	6143	13613	14008	18805	18805		624			-0.00972735485117937
SAIKDFVL	8	Unmodified	_SAIKDFVL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.76056083005	2	446.760561	891.506569	0.96727	0.00043214	-2.5333	-0.0011318	-1.566	-0.00069964	446.7590879168706	24.068	0.1689	24.068	24.019	24.188	0	1332	43	0.8172735	0.02586186	0.8172735	332.4078	0	10.518707						150	8	3	NaN	NaN	NaN	0.56786	1	5947	5947		27.296	6.8476	1	27064			23607	3884	13614	14009	18806	18806					0.05647570528560664
SAIKDFVL	8	Unmodified	_SAIKDFVL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.76056083005	2	446.760561	891.506569	1.1443	0.00051121	-2.1942	-0.00098028	-1.0499	-0.00046907	446.75974057453516	24.092	0.12063	24.079	24.055	24.175	-0.012749	1332	40	0.8172735	0.02401328	0.81575406	332.4078	0	9.766846						150	6	3	NaN	NaN	NaN	0.59183	1	5831	5831		25.801	3.966	1	25036			23608	3884	13614	14009	18807	18807					0.05647570528560664
SAIKEEQEL	9	Unmodified	_SAIKEEQEL_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7718537978501	2	523.771854	1045.52915	1.6262	0.00085175	-2.256	-0.0011816	-0.62979	-0.00032987	523.7709592803952	15.39	0.26423	15.39	15.366	15.63	0	1266	67	0.85786515	0.04055661	0.85786515	348.13693	0	16.458588						366	12	5	NaN	NaN	NaN	0.032409	1	10446	10446		55.958	0.3665	1	96247			23609	1926	13615	14010	18808	18808					0.008211251355305649
SAIKEEQEL	9	Unmodified	_SAIKEEQEL_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7718537978501	2	523.771854	1045.52915	1.7131	0.00089729	-1.477	-0.00077359	0.23617	0.0001237	523.7712353175666	15.412	0.31172	15.4	15.352	15.664	-0.012201	1266	61	0.85786515	0.036869586	0.8563457	348.13693	0	14.962341						447	14	4	NaN	NaN	NaN	0.024359	1	10235	10235		66.481	18.479	1	112860			23610	1926	13615	14010	18809	18809					0.008211251355305649
SAIKELDTL	9	Unmodified	_SAIKELDTL_					0	0	0		ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant	ENSG00000085832|ENST00000371733|EPS15	ENSG00000085832|ENST00000371733|EPS15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.2793146892	2	495.279315	988.544076	1.0208	0.00050556	-1.4451	-0.00071571	-0.42429	-0.00021014	495.27819256477557	21.2	0.072292	21.186	21.162	21.234	-0.014004	1269	40	0.8560222	0.023961365	0.85450274	347.64917	0	9.731232						61	4	2	NaN	NaN	NaN	0.10945	1	8002	8002		34.454	14.005	1	7637.9			23611	976	13616	14011	18810	18810					0.04934617003527819
SAINEVEIL	9	Unmodified	_SAINEVEIL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5357028476002	1	987.535703	986.528426	1.3758	0.0013587	-0.24935	-0.00024624	1.1265	0.0011125	987.53510440866	27.687	0.12062	27.677	27.653	27.774	-0.009552	252	76	1.4695803	0.044445038	1.4680609	298.42676	0	9.025421						182	6	2	NaN	NaN	NaN	0.019103	1	7937	7937		73.133	0	1	40502			23612	4743	13617	14012	18811	18811					0.03462330486490828
SAINEVEIL	9	Unmodified						0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	987.535703	986.528426	2.0084	0.0019834	-0.79538	-0.00078547	1.2131	0.0011979	987.5355368332739	27.688	0.16891	27.688	27.615	27.784	0	252	82	1.4695803	0.047995567	1.4695803	298.42676		9.746429	0.0051727	-0.00030218	0.00075972	NaN	73.133	196	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39930			23613	4743	13617	14012							0.03462330486490828
SAINQVEAL	9	Unmodified	_SAINQVEAL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5047370702001	1	944.504737	943.497461	1.9319	0.0018247	0.082767	7.8174E-05	2.0146	0.0019028	944.504735971642	22.959	0.16846	22.959	22.935	23.103	0	306	58	1.4375578	0.033832073	1.4375578	292.10733	0	6.8745728						176	8	3	NaN	NaN	NaN	0.12866	1	6909	6909		31.675	0	1	21084			23614	2037	13618	14013	18812	18812					0.023451771722420744
SAINQVEAL	9	Unmodified	_SAINQVEAL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5047370702001	1	944.504737	943.497461	1.7083	0.0016135	-1.0596	-0.0010008	0.6487	0.0006127	944.5034995802707	22.982	0.12047	22.969	22.945	23.065	-0.01354	300	52	1.4411188	0.030267596	1.4395994	292.83096	0	6.1502686						181	6	3	NaN	NaN	NaN	0.04743	1	6771	6771		48.002	3.3638	1	19751			23615	2037	13618	14013	18813	18813					0.023451771722420744
SAISAFEIF	9	Unmodified	_SAISAFEIF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5036744377	1	984.503674	983.496398	1.3988	0.0013771	0.15173	0.00014938	1.5505	0.0015265	984.5040660261118	33.576	0.28947	33.576	33.504	33.793	0	249	97	1.4713576	0.056898713	1.4713576	298.80035	0	11.554871						306	13	2	NaN	NaN	NaN	0.021105	1	8005	8005		70.6	23.464	1	107540			23616	2208	13619	14014	18814	18814					0.0039896280333096
SAISAFEIF	9	Unmodified	_SAISAFEIF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5036744377	1	984.503674	983.496398	1.0449	0.0010287	0.049232	4.8469E-05	1.0942	0.0010772	984.5033609624496	33.575	0.19305	33.573	33.525	33.718	-0.0018463	249	97	1.4713576	0.056886554	1.4698381	298.80035	0	11.552429						317	9	3	NaN	NaN	NaN	0.018156	1	7832	7832		74.332	9.782	1	97368			23617	2208	13619	14014	18815	18815					0.0039896280333096
SAISEGTVL	9	Unmodified	_SAISEGTVL_					0	0	0		ENST00000569796.1_1_16:2285204-2285570:+|nuORF;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	876.4672889314	1	876.467289	875.460012	1.8996	0.001665	0.35601	0.00031203	2.2556	0.001977	876.4677609819257	22.26	0.31334	22.26	22.212	22.525	0	429	91	1.3643885	0.05366695	1.3643885	277.54935	0	10.917145						395	14	4	NaN	NaN	NaN	0.021105	1	5738	5738		70.6	6.0498	1	101320			23618	4578	13620	14015	18816	18816					0.01730085906626755
SAISEGTVL	9	Unmodified	_SAISEGTVL_					0	0	0		ENST00000569796.1_1_16:2285204-2285570:+|nuORF;ENSG00000167967|ENST00000301727|E4F1	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	ENST00000569796.1_1_16:2285204-2285570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.4672889314	1	876.467289	875.460012	1.1334	0.00099341	-0.043419	-3.8055E-05	1.09	0.00095536	876.467283112827	22.259	0.19277	22.246	22.197	22.39	-0.013731	429	106	1.3643885	0.06263471	1.362869	277.54935	0	12.741425						406	9	4	NaN	NaN	NaN	0.016254	1	5606	5606		76.739	21.246	1	98507			23619	4578	13620	14015	18817	18817					0.01730085906626755
SAISREDLL	9	Unmodified	_SAISREDLL_					0	0	0		ENST00000554313.1_1_14:96864549-96887771:+|nuORF;ENST00000556643.1_1_14:96858491-96871207:+|nuORF;ENSG00000140057|ENST00000267584|AK7	ENST00000554313.1_1_14:96864549-96887771:+|nuORF	ENST00000554313.1_1_14:96864549-96887771:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.27456366230007	2	502.274564	1002.53457	1.7263	0.00086707	-5.9959	-0.0030116	-4.2696	-0.0021445	502.27196683443486	20.021	0.072111	20.021	19.997	20.069	0	1332	37	0.8172735	0.02216494	0.8172735	331.84894	0	8.999908						70	4	2	NaN	NaN	NaN	0.17328	1	8698	8698		27.046	7.4546	1	7861.8			23620	3249	13621	14016	18818	18818					0.03340848718016787
SAISREDLL	9	Unmodified	_SAISREDLL_					0	0	0		ENST00000554313.1_1_14:96864549-96887771:+|nuORF;ENST00000556643.1_1_14:96858491-96871207:+|nuORF;ENSG00000140057|ENST00000267584|AK7	ENST00000554313.1_1_14:96864549-96887771:+|nuORF	ENST00000554313.1_1_14:96864549-96887771:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.27456366230007	2	502.274564	1002.53457	1.5186	0.00076277	-2.0678	-0.0010386	-0.54919	-0.00027584	502.2736282711188	20.044	0.04818	20.03	20.006	20.054	-0.014141	1332	52	0.8172735	0.0313918	0.81575406	331.8489	0	12.746429						70	3	2	NaN	NaN	NaN	0.40649	1	8523	8523		13.463	1.7242	1	7755			23621	3249	13621	14016	18819	18819					0.03340848718016787
SAISSSDLF	9	Unmodified	_SAISSSDLF_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4465534893002	1	926.446553	925.439277	2.3535	0.0021804	-0.92814	-0.00085987	1.4254	0.0013205	926.4455338632421	25.588	0.096483	25.588	25.564	25.66	0	348	52	1.412609	0.030315995	1.412609	287.1184	0	6.1618347						63	5	2	NaN	NaN	NaN	0.31737	1	6500	6500		17.799	0.018654	1	4169.7			23622	3661	13622	14017	18820	18820					-0.026425044730331138
SAKKGAGV	8	Unmodified	_SAKKGAGV_					0	0	0			REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF	REV__ENST00000465692.1_1_10:79795142-79808843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.4253645372002	1	717.425365	716.418088	0.83646	0.0006001	1.8208	0.0013063	2.6573	0.0019064	717.4263455489853	40.607	0.12014	40.613	40.541	40.661	0.0067596	654	70	1.2297117	0.04147768	1.2281922	251.01015	0	8.466461						217	6	3	NaN	NaN	NaN	0.84876	1	3471	3471		0.39566	0	1	29369	+		23623	12295	13623	14018	18821	18821					0.048535750087694396
SAKVLSLK	8	Unmodified	_SAKVLSLK_					0	0	0		PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.P1625A|1|0.31|ENSG00000133401|chr5:32088321-32088321|C/G|missense_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	845.5454796729002	1	845.54548	844.538203	2.0102	0.0016997	6.0144	0.0050854	8.0246	0.0067851	845.5503583168428	36.469	0.048138	36.47	36.446	36.494	0.0016785	360	31	1.405474	0.017843246	1.4039545	286.06897	0	3.631836						50	3	2	NaN	NaN	NaN	0.80191	1	5193	5193		8.962	0	1	2877.6			23624	2823	13624	14019	18822	18822					0.1097156328253277
SALEDVAL	8	Unmodified	_SALEDVAL_					0	0	0		nc|ENSG00000132749|Q9Y4I5-3|TESMIN;nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN	nc|ENSG00000132749|Q9Y4I5-3|TESMIN	nc|ENSG00000132749|Q9Y4I5-3|TESMIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.4301751436	1	817.430175	816.422899	2.7832	0.0022751	-1.2692	-0.0010375	1.514	0.0012376	817.4295866316974	25.129	0.048243	25.117	25.117	25.165	-0.012011	486	31	1.3303722	0.017919421	1.3288528	270.93213	0	3.649353						42	3	2	NaN	NaN	NaN	0.83211	1	4867	4867		4.9097	0	1	2489.6			23625	2790	13625	14020	18823	18823					0.007344143608520426
SALEKEEAL	9	Unmodified	_SALEKEEAL_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.26112193604996	2	495.261122	988.507691	1.5545	0.00076989	-1.2269	-0.00060764	0.32761	0.00016225	495.26055460672706	16.371	0.31164	16.358	16.214	16.526	-0.012995	1323	91	0.8228144	0.055400252	0.82129496	334.16293	0	22.499237						392	14	4	NaN	NaN	NaN	0.057383	1	7998	7998		43.776	13.165	1	55615			23626	1660	13626	14021	18824	18824					0.012977401068042127
SALEKFFYF	9	Unmodified	_SALEKFFYF_					0	0	0		nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A;ENST00000586972.1_1_17:40265669-40266402:-|nuORF	nc|ENSG00000108773|Q92830-2|KAT2A	nc|ENSG00000108773|Q92830-2|KAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2922250992001	2	576.292225	1150.5699	1.538	0.00088636	-1.7965	-0.0010353	-0.2585	-0.00014897	576.290987606193	30.391	0.12068	30.391	30.342	30.463	0	1200	70	0.89836043	0.042274177	0.89836043	364.13766	0	17.135254						88	6	2	NaN	NaN	NaN	0.44834	1	14830	14830		11.739	1.9929	1	11782			23627	1693	13627	14022	18825	18825					0.0006351124582124612
SALFFEAL	8	Unmodified	_SALFFEAL_					0	0	0			REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.23946124720004	2	449.239461	896.46437	1.295	0.00058175	6.4865	0.002914	7.7815	0.0034957	449.2430616921661	14.093	0.14385	14.082	14.01	14.154	-0.010672	1383	37	0.7858409	0.02220571	0.7843215	319.59644	0	9.030945						99	7	2	NaN	NaN	NaN	0.77489	1	5896	5896		12.588	4.2976	1	7452.5	+		23628	9229	13628	14023	18826	18826					0.011995951201924981
SALFWPCPL	9	Unmodified	_SALFWPCPL_					0	0	0		ENST00000564176.5_1_16:31487914-31488894:+|nuORF	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.2624134147501	2	517.262413	1032.51027	1.9782	0.0010233	-3.0267	-0.0015656	-1.0485	-0.00054233	517.2606951928016	17.117	0.072042	17.117	17.093	17.165	0	1290	43	0.84311575	0.025828242	0.84311575	342.2074	0	10.483276						74	4	2	NaN	NaN	NaN	0.58547	1	9884	9884		6.0903	1.1806	1	9281.1			23629	7619	13629	14024	18827	18827					-0.004680829692233601
SALGGSVI	8	Unmodified	_SALGGSVI_					0	0	0			REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3984810847002	1	703.398481	702.391205	0.82725	0.00058189	5.2024	0.0036594	6.0296	0.0042412	703.4024042427249	29.207	0.096571	29.2	29.151	29.248	-0.0077209	594	73	1.265731	0.043186188	1.2642115	258.45923	0	8.818512						131	5	2	NaN	NaN	NaN	0.8439	1	3202	3202		3.1533	0	1	11795	+		23630	11469	13630	14025	18828	18828					0.02810466397579603
SALGGSVI	8	Unmodified						0	0	0			REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	REV__ENST00000221462.8_1_19:45596280-45596451:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	703.398481	702.391205	0.82725	0.00058189	5.2024	0.0036594	6.0296	0.0042412	703.4024042427249	29.207	0.096571	29.2	29.151	29.248	-0.0077209	594	73	1.265731	0.043186188	1.2642115	258.45923		8.818512	0.0078224	-0.00029975	-0.004357	NaN	3.1533	131	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11795	+		23631	11469	13630	14025							0.02810466397579603
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.7610921463001	2	480.761092	959.507631	1.8147	0.00087245	-2.2277	-0.001071	-0.41293	-0.00019852	480.759817350759	21.922	0.14456	21.922	21.898	22.043	0	1278	46	0.85049206	0.027656734	0.85049206	345.54666	0	11.236633						167	7	4	NaN	NaN	NaN	0.29681	1	7329	7329		19.118	0	1	23640			23632	2181	13631	14026	18829	18829					0.026257848974864828
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.7610921463001	2	480.761092	959.507631	1.6866	0.00081085	1.1672	0.00056114	2.8538	0.001372	480.76127569209535	21.946	0.12038	21.932	21.908	22.028	-0.013895	1275	94	0.85233563	0.05720049	0.8508162	346.2957	0	23.23999						190	6	4	NaN	NaN	NaN	0.062072	1	7182	7182		41.785	0	1	27921			23633	2181	13631	14026	18830	18830					0.026257848974864828
SALLHGGG	8	Unmodified	_SALLHGGG_					0	0	0		ENST00000337451.7_1_15:23034150-23034375:-|nuORF	ENST00000337451.7_1_15:23034150-23034375:-|nuORF	ENST00000337451.7_1_15:23034150-23034375:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	356.1928454056001	2	356.192845	710.371138	0.52511	0.00018704	6.9041	0.0024592	7.4292	0.0026462	356.19575664774516	54.954	0.048027	54.953	54.929	54.977	-0.00061798	1533	31	0.6930556	0.018605411	0.6915362	282.9722	0	7.5965576						41	3	2	NaN	NaN	NaN	0.84945	1	3373	3373		0	0	1	3632.9			23634	6530	13632	14027	18831	18831					0.0043671545763572794
SALMSGAA	8	Unmodified	_SALMSGAA_					0	0	0		tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	tr|U7SS27|U7SS27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01518PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3392516463001	1	707.339252	706.331975	1.069	0.00075617	3.7112	0.0026251	4.7802	0.0033813	707.3420013400403	21.175	0.33708	21.175	20.983	21.32	0	732	73	1.1827712	0.043390036	1.1827712	241.49329	0	8.859192						412	15	3	NaN	NaN	NaN	0.82797	1	3331	3331		5.4659	0	1	42672			23635	13824	13633	14028	18832	18832					-0.0329375288825986
SAMFEHEM	8	Unmodified	_SAMFEHEM_					0	0	0		ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.1938705003	2	491.193871	980.373188	2.1508	0.0010565	-1.894	-0.00093032	0.25678	0.00012613	491.19302392330314	18.005	0.19188	18.005	17.981	18.173	0	1317	34	0.8265074	0.020307899	0.8265074	335.70093	0	8.248413						153	9	3	NaN	NaN	NaN	0.65075	1	7887	7887		22.126	11.521	1	13375			23636	2287	13634	14029	18833	18833					-0.11778359911090774
SAMFEHEM	8	Unmodified	_SAMFEHEM_					0	0	0		ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.1938705003	2	491.193871	980.373188	1.5594	0.00076599	-1.4589	-0.00071658	0.10058	4.9407E-05	491.19319590657926	18.05	0.19208	18.036	17.988	18.18	-0.013786	1314	34	0.8283535	0.020307899	0.8268341	336.4508	0	8.248413						172	9	4	NaN	NaN	NaN	0.72043	1	7720	7720		17.78	7.1754	1	15702			23637	2287	13634	14029	18834	18834					-0.11778359911090774
SAMPIEVMM	9	Unmodified	_SAMPIEVMM_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4562720140001	1	1008.45627	1007.449	1.8507	0.0018663	1.4114	0.0014233	3.262	0.0032896	1008.4580369457282	29.932	0.072376	29.932	29.908	29.98	0	201	100	1.4997677	0.058605194	1.4997677	304.46973	0	11.897522						203	4	2	NaN	NaN	NaN	0.25448	1	8867	8867		21.835	7.7934	1	20382			23638	1300	13635	14030	18835	18835					-0.05443099055173661
SAMPIEVMM	9	Unmodified	_SAMPIEVMM_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4562720140001	1	1008.45627	1007.449	1.2574	0.0012681	0.41381	0.00041731	1.6712	0.0016854	1008.4571444846712	29.931	0.16893	29.925	29.901	30.07	-0.0064087	204	100	1.4979934	0.058598995	1.496474	304.10953	0	11.896271						194	8	3	NaN	NaN	NaN	0.25448	1	8695	8695		21.835	6.6596	1	15879			23639	1300	13635	14030	18836	18836					-0.05443099055173661
SANLEEVTM	9	Unmodified	_SANLEEVTM_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4557379671	1	993.455738	992.448462	2.3853	0.0023697	-0.86196	-0.00085632	1.5233	0.0015134	993.4547872145113	22.308	0.241	22.308	22.26	22.501	0	261	112	1.4642475	0.06582761	1.4642475	297.3194	0	13.366486						662	11	4	NaN	NaN	NaN	0.026469	1	8298	8298		63.731	26.428	1	164030			23640	2441	13636	14031	18837	18837					-0.048064791790238814
SANLEEVTM	9	Unmodified	_SANLEEVTM_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4557379671	1	993.455738	992.448462	1.7108	0.0016996	-0.18362	-0.00018241	1.5272	0.0015172	993.4558697029298	22.308	0.28902	22.294	22.246	22.535	-0.013731	261	127	1.4642475	0.074735165	1.462728	297.3194	0	15.175171						641	13	4	NaN	NaN	NaN	0.006197	1	8131	8131		100.15	50.185	1	160390			23641	2441	13636	14031	18838	18838					-0.048064791790238814
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(130)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.2289645279	2	505.228965	1008.44338	2.515	0.0012707	-3.0812	-0.0015567	-0.56615	-0.00028604	505.2275849567943	18.316	0.23982	18.316	18.245	18.484	0	1347	70	0.8080346	0.042503357	0.8080346	328.0715	0	17.256866						480	11	4	NaN	NaN	NaN	2.212E-07	1	8910	8910		133.34	62.743	1	141240			23642	2441	13636	14032	18839	18839		275			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(100)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.4506525892001	1	1009.45065	1008.44338	2.488	0.0025115	-1.0043	-0.0010138	1.4837	0.0014977	1009.4499357294173	18.316	0.26382	18.316	18.245	18.508	0	276	79	1.4553556	0.046249866	1.4553556	295.44968	0	9.38913						571	12	4	NaN	NaN	NaN	0.006197	1	8911	8911		100.15	41.946	1	114280			23643	2441	13636	14032	18840	18840		275			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(54)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.2289645279	2	505.228965	1008.44338	2.1132	0.0010677	-2.9405	-0.0014856	-0.82727	-0.00041796	505.22773432118504	18.338	0.36003	18.324	18.228	18.588	-0.01395	1350	79	0.80618626	0.04803437	0.8046668	327.32104	0	19.502502						472	16	3	NaN	NaN	NaN	0.034172	1	8738	8738		53.652	23.041	1	138340			23644	2441	13636	14032	18841	18841		275			-0.060507830416327124
SANLEEVTM	9	Oxidation (M)	_SANLEEVTM(Oxidation (M))_		SANLEEVTM(1)		SANLEEVTM(150)	0	0	1		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.4506525892001	1	1009.45065	1008.44338	2.4751	0.0024985	-1.0123	-0.0010219	1.4628	0.0014766	1009.4500879366518	18.338	0.31206	18.324	18.228	18.54	-0.01395	273	79	1.4571344	0.046249866	1.4556149	295.81076	0	9.38913						591	14	4	NaN	NaN	NaN	5.8423E-12	1	8739	8739		148.45	87.179	1	120540			23645	2441	13636	14032	18842	18842		275			-0.060507830416327124
SAPFRKFGHPP	11	Unmodified	_SAPFRKFGHPP_					0	0	0			REV__ENST00000521858.5_1_5:70355111-70356688:-|nuORF	REV__ENST00000521858.5_1_5:70355111-70356688:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.22436843466676	3	414.224368	1239.65128	1.2034	0.00049846	-0.028244	-1.17E-05	1.1751	0.00048676	414.5594680911876	22.38	0.12023	22.366	22.318	22.438	-0.013733	1434	46	0.75435036	0.027809858	0.7528309	458.2532	0	16.893951						70	6	2	NaN	NaN	NaN	0.66717	1	16786	16786		6.8076	0	1	6997.8	+		23646	12603	13637	14033	18843	18843					0.04103631728435175
SAPGAGFL	8	Unmodified	_SAPGAGFL_					0	0	0			REV__ENST00000474241.1_1_1:98157206-98165091:-|nuORF	REV__ENST00000474241.1_1_1:98157206-98165091:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3722663341999	1	719.372266	718.36499	0.25343	0.00018231	-3.7862	-0.0027237	-3.5328	-0.0025414	719.3691625005414	57.259	0.048	57.258	57.234	57.282	-0.00053787	480	49	1.3339561	0.028677225	1.3324367	272.2748	0	5.8533325						47	3	2	NaN	NaN	NaN	0.84876	1	3496	3496		0.39566	0	1	3016.1	+		23647	11062	13638	14034	18844	18844					-0.005458027739223326
SAQFHYLI	8	Unmodified	_SAQFHYLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5043431397002	1	978.504343	977.497067	1.6991	0.0016626	-3.5982	-0.0035208	-1.899	-0.0018582	978.5001371182062	32.827	0.024139	32.824	32.8	32.824	-0.0031052	231	46	1.4820169	0.026638746	1.4804975	300.9906	0	5.410187						55	2	2	NaN	NaN	NaN	0.79607	1	7657	7657		9.746	0.62279	1	6009.1			23648	6199	13639	14035	18845	18845					0.007418022430556448
SAQGSDVSL	9	Unmodified	_SAQGSDVSL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.410502334	1	863.410502	862.403226	2.442	0.0021085	-1.4199	-0.001226	1.0221	0.00088247	863.4092277220874	17.645	0.3356	17.645	17.549	17.885	0	495	103	1.3249949	0.06094587	1.3249949	269.59888	0	12.400757						558	15	4	NaN	NaN	NaN	0.055363	1	5557	5557		44.633	11.855	1	130480			23649	5943;6047	13640	14036	18846	18846					-0.03347961649910758
SAQGSDVSL	9	Unmodified	_SAQGSDVSL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.410502334	1	863.410502	862.403226	1.9654	0.0016969	-0.099946	-8.6294E-05	1.8655	0.0016107	863.410297644054	17.642	0.35968	17.628	17.556	17.916	-0.013786	492	88	1.3267875	0.051974893	1.325268	269.96362	0	10.575409						618	16	3	NaN	NaN	NaN	0.071077	1	5420	5420		40.006	15.444	1	144840			23650	5943;6047	13640	14036	18847	18847					-0.03347961649910758
SAQGSDVSLTA	11	Unmodified	_SAQGSDVSLTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.4952945958998	1	1035.49529	1034.48802	2.2173	0.002296	-1.7679	-0.0018307	0.4494	0.00046535	1035.4925044846327	17.957	0.071951	17.957	17.957	18.029	0	231	37	1.4820169	0.021311998	1.4820169	300.75995	0	4.3250732						51	4	2	NaN	NaN	NaN	0.29849	1	9959	9959		25.681	2.347	1	3778			23651	5943;6047	13641	14037	18848	18848					-0.027846359039585877
SAQGSDVSLTA	11	Unmodified						0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206341|P01893|HLA-H;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000481849.5_1_6:31322262-31322472:-|nuORF;ENST00000496081.5_1_6:29912792-29913229:+|nuORF;ENST00000497377.5_1_6:31322262-31322491:-|nuORF;ENSG00000234745|ENST00000412585|HLA-B	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1035.49529	1034.48802	2.3596	0.0024434	-1.8009	-0.0018648	0.55875	0.00057859	1035.4931363959197	17.978	0.095984	17.964	17.94	18.036	-0.013786	228	37	1.4837929	0.021311998	1.4822735	301.12036		4.3250732	0.003547	-7.9515E-06	0.00012824	NaN	25.681	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4513.4			23652	5943;6047	13641	14037							-0.027846359039585877
SAQQLTQQ	8	Unmodified	_SAQQLTQQ_					0	0	0			REV__ENST00000233099.5_1_2:37292984-37293032:-|nuORF	REV__ENST00000233099.5_1_2:37292984-37293032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.4530358507001	1	903.453036	902.445759	1.5822	0.0014295	-8.5165	-0.0076942	-6.9342	-0.0062648	903.4436895174747	29.28	0.096498	29.28	29.256	29.353	0	396	43	1.3840506	0.02500999	1.3840506	281.41885	0	5.085266						84	5	2	NaN	NaN	NaN	0.67765	1	6122	6122		20.449	2.6497	1	6530.8	+		23653	11483	13642	14038	18849	18849					-0.009365665216591879
SASADVLAL	9	Unmodified	_SASADVLAL_					0	0	0		ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	ENSG00000169021|ENST00000304863|UQCRFS1	ENSG00000169021|ENST00000304863|UQCRFS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4567242451	1	846.456724	845.449448	2.3165	0.0019608	-1.3836	-0.0011712	0.93289	0.00078965	846.4555528424575	26.022	0.21723	26.022	25.974	26.191	0	423	103	1.3679651	0.060829043	1.3679651	278.42966	0	12.380859						354	10	3	NaN	NaN	NaN	0.056143	1	5333	5333		44.302	2.5178	1	99724			23654	4651	13643	14039	18850	18850					0.02054103252180539
SASALAVAL	9	Unmodified	_SASALAVAL_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.4668950009001	1	802.466895	801.459619	2.4902	0.0019983	-0.83279	-0.00066829	1.6574	0.00133	802.4663882039008	25.974	0.14481	25.974	25.95	26.094	0	513	106	1.3142352	0.062788606	1.3142352	267.7285	0	12.790924						320	7	4	NaN	NaN	NaN	0.03623	1	4765	4765		52.758	0	1	64963			23655	2046	13644	14040	18851	18851					0.050947109774256205
SASALAVAL	9	Unmodified	_SASALAVAL_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	802.4668950009001	1	802.466895	801.459619	2.4292	0.0019494	-1.2286	-0.00098592	1.2006	0.00096346	802.4658398025862	25.998	0.16895	25.987	25.938	26.107	-0.011137	510	115	1.316029	0.068174124	1.3145095	268.0939	0	13.888062						305	8	3	NaN	NaN	NaN	0.02781	1	4673	4673		61.977	14.937	1	66007			23656	2046	13644	14040	18852	18852					0.050947109774256205
SASALIGW	8	Unmodified	_SASALIGW_					0	0	0		ENST00000397356.7_1_16:1876892-1876970:-|nuORF	ENST00000397356.7_1_16:1876892-1876970:-|nuORF	ENST00000397356.7_1_16:1876892-1876970:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.4250301862	1	804.42503	803.417754	-0.11541	-9.284E-05	-5.6796	-0.0045688	-5.795	-0.0046616	804.4212304596344	55.194	0.14429	55.193	55.169	55.314	-0.0006218	462	43	1.3447032	0.025065899	1.3431838	273.92404	0	5.106079						142	7	3	NaN	NaN	NaN	0.84207	1	4694	4694		3.5732	0.41988	1	10802			23657	6806	13645	14041	18853	18853					0.008181552889027444
SASGDEMVSL	10	Unmodified	_SASGDEMVSL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4350025250002	1	995.435003	994.427726	2.2239	0.0022137	-1.4448	-0.0014382	0.77908	0.00077552	995.4334131687867	22.838	0.12062	22.838	22.79	22.911	0	327	61	1.425088	0.03564489	1.425088	289.36008	0	7.2375793						178	6	3	NaN	NaN	NaN	0.25724	1	8359	8359		30.61	8.7751	1	19418			23658	909	13646	14042	18854	18854					-0.06971069558665022
SASGDEMVSL	10	Unmodified	_SASGDEMVSL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.4350025250002	1	995.435003	994.427726	1.6461	0.0016386	0.05042	5.019E-05	1.6965	0.0016888	995.4348087403238	22.838	0.19284	22.824	22.776	22.969	-0.01354	327	61	1.425088	0.035641074	1.4235686	289.36008	0	7.236847						187	9	3	NaN	NaN	NaN	0.2358	1	8195	8195		32.453	9.3352	1	19135			23659	909	13646	14042	18855	18855					-0.06971069558665022
SASGDEMVSL	10	Oxidation (M)	_SASGDEM(Oxidation (M))VSL_		SASGDEM(1)VSL		SASGDEM(42)VSL	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4299171471002	1	1011.42992	1010.42264	1.8523	0.0018735	-0.46521	-0.00047053	1.3871	0.001403	1011.4296635545666	19.132	0.19192	19.132	19.06	19.252	0	303	55	1.4393384	0.032049775	1.4393384	292.1903	0	6.5062256						220	9	3	NaN	NaN	NaN	0.12649	1	8985	8985		42.318	9.8648	1	20025			23660	909	13646	14043	18856	18856		99			-0.08215373421285221
SASGDEMVSL	10	Oxidation (M)	_SASGDEM(Oxidation (M))VSL_		SASGDEM(1)VSL		SASGDEM(50)VSL	0	0	1		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.4299171471002	1	1011.42992	1010.42264	1.799	0.0018196	-0.20236	-0.00020467	1.5967	0.0016149	1011.4305666355772	19.154	0.12025	19.14	19.068	19.188	-0.014141	303	58	1.4393384	0.033828497	1.437819	292.1903	0	6.8673096						183	6	3	NaN	NaN	NaN	0.070973	1	8810	8810		49.961	17.509	1	17668			23661	909	13646	14043	18857	18857		99			-0.08215373421285221
SASGSIIC	8	Unmodified	_SASGSIIC_					0	0	0			REV__ENSG00000198815|ENST00000361346|FOXJ3	REV__ENSG00000198815|ENST00000361346|FOXJ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3498163326001	1	737.349816	736.34254	1.3653	0.0010067	0.29623	0.00021843	1.6615	0.0012251	737.3500664906197	32.514	0.16892	32.514	32.466	32.635	0	1215	103	0.8891654	0.062583566	0.8891654	181.40529	0	12.768143						422	8	4	NaN	NaN	NaN	0.84692	1	3845	3845		1.4396	0	1	88895	+		23662	11193	13647	14044	18858	18858					-0.03617770233825013
SASGSIIC	8	Unmodified						0	0	0			REV__ENSG00000198815|ENST00000361346|FOXJ3	REV__ENSG00000198815|ENST00000361346|FOXJ3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	737.349816	736.34254	1.3653	0.0010067	0.29623	0.00021843	1.6615	0.0012251	737.3500664906197	32.514	0.16892	32.514	32.466	32.635	0	1215	103	0.8891654	0.062583566	0.8891654	181.40529		12.768143	0.0021038	0.00027937	-0.00015998	NaN	1.4396	422	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88895	+		23663	11193	13647	14044							-0.03617770233825013
SASKSSLI	8	Unmodified	_SASKSSLI_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	792.4461595588001	1	792.44616	791.438883	2.0541	0.0016278	4.7836	0.0037907	6.8377	0.0054185	792.4497673223457	29.98	0.12071	29.98	29.956	30.077	0	501	64	1.3214091	0.037649035	1.3214091	269.24728	0	7.671295						113	6	2	NaN	NaN	NaN	0.8438	1	4638	4638		3.2116	0.7501	1	12857			23664	3277	13648	14045	18859	18859					0.03482120597766425
SASLDSPVL	9	Unmodified	_SASLDSPVL_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4672889314	1	888.467289	887.460012	1.9355	0.0017196	-0.58717	-0.00052168	1.3483	0.001198	888.4665495280339	24.019	0.26548	24.019	23.971	24.237	0	402	88	1.3804773	0.051809072	1.3804773	280.76346	0	10.536987						467	12	4	NaN	NaN	NaN	0.0081087	1	5906	5906		96.245	37.646	1	111590			23665	1845	13649	14046	18860	18860					0.011780859066220728
SASLDSPVL	9	Unmodified	_SASLDSPVL_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4672889314	1	888.467289	887.460012	1.7518	0.0015564	-0.37981	-0.00033745	1.372	0.001219	888.4668014303143	24.043	0.19298	24.031	23.982	24.175	-0.012749	405	91	1.3786905	0.05358696	1.377171	280.40005	0	10.898621						423	9	4	NaN	NaN	NaN	0.00010594	1	5784	5784		122.55	41.911	1	102210			23666	1845	13649	14046	18861	18861					0.011780859066220728
SASLHGGG	8	Unmodified	_SASLHGGG_					0	0	0		nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.3263787741002	1	685.326379	684.319102	1.8274	0.0012524	-10.787	-0.0073923	-8.9591	-0.0061399	685.3190342163143	26.408	0.26541	26.397	26.349	26.614	-0.011137	666	133	1.2224985	0.07940376	1.2209791	249.75739	0	16.22226						559	12	3	NaN	NaN	NaN	0.84207	1	2844	2844		3.5732	0.41988	1	125570			23667	3071	13650	14047	18862	18862					-0.035684479561268745
SASLPQTQTL	10	Unmodified	_SASLPQTQTL_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.27984600545	2	523.279846	1044.54514	1.5103	0.00079029	-1.4778	-0.00077328	0.032513	1.7013E-05	523.27921855332	22.332	0.14473	22.332	22.26	22.405	0	1278	43	0.85049206	0.025814295	0.85049206	345.149	0	10.476013						148	7	3	NaN	NaN	NaN	0.68732	1	10402	10402		8.9191	0.64155	1	16845			23668	6982	13651	14048	18863	18863					0.02464831372435583
SASNIDDVL	9	Unmodified	_SASNIDDVL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4523671487001	1	933.452367	932.445091	1.9422	0.0018129	2.2809	0.0021292	4.2231	0.0039421	933.4549164149173	23.586	0.14451	23.586	23.538	23.682	0	375	100	1.3965509	0.058861136	1.3965509	283.82324	0	11.962433						268	7	3	NaN	NaN	NaN	0.030696	1	6656	6656		58.2	15.882	1	29202			23669	2653	13652	14049	18864	18864					-0.023834059613704994
SASNIDDVL	9	Unmodified	_SASNIDDVL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4523671487001	1	933.452367	932.445091	1.8662	0.001742	1.6296	0.0015212	3.4958	0.0032632	933.4549150229393	23.609	0.12054	23.596	23.548	23.669	-0.013048	375	97	1.3965509	0.057080507	1.3950315	283.82324	0	11.600525						255	6	3	NaN	NaN	NaN	0.036546	1	6513	6513		52.624	14.355	1	26788			23670	2653	13652	14049	18865	18865					-0.023834059613704994
SASSKEPAM	9	Unmodified	_SASSKEPAM_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.21311749845	2	454.213117	906.411682	2.47	0.0011219	-2.4246	-0.0011013	0.045431	2.0636E-05	454.21178882651685	12.246	0.023996	12.237	12.237	12.261	-0.0088415	1407	31	0.77102906	0.018522859	0.7695096	313.5207	0	7.531891						29	2	2	NaN	NaN	NaN	0.53237	1	6059	6059		8.2775	0.73717	1	1635.2			23671	5781	13653	14050	18866	18866					-0.04526731004921203
SASSNSSL	8	Unmodified	_SASSNSSL_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.3420884178	1	752.342088	751.334812	1.2905	0.00097093	5.0313	0.0037853	6.3219	0.0047562	752.345808348983	27.228	0.16891	27.218	27.194	27.363	-0.010124	600	58	1.2621325	0.03419459	1.2606131	257.40317	0	6.9737396						197	8	3	NaN	NaN	NaN	0.82212	1	4001	4001		6.2502	0	1	20847	+		23672	11273	13654	14051	18867	18867					-0.050802062297520933
SASSNSSL	8	Unmodified						0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	752.342088	751.334812	1.2905	0.00097093	5.0313	0.0037853	6.3219	0.0047562	752.345808348983	27.228	0.16891	27.218	27.194	27.363	-0.010124	600	58	1.2621325	0.03419459	1.2606131	257.40317		6.9737396	-0.0054453	4.8455E-05	0.00014004	NaN	6.2502	197	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20847	+		23673	11273	13654	14051							-0.050802062297520933
SASSVTVTR	9	Unmodified	_SASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.2458062228501	2	454.245806	906.47706	0.83626	0.00037987	-1.6395	-0.00074473	-0.80323	-0.00036486	454.24507373775685	12.388	0.2159	12.388	12.268	12.484	0	1392	49	0.780288	0.029623687	0.780288	317.28525	0	12.045746						252	10	3	NaN	NaN	NaN	0.077759	1	6183	6183		39.039	12.924	1	49382			23674	4077	13655	14052	18868	18868					0.02008006512448901
SASSVTVTR	9	Unmodified	_SASSVTVTR_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.2458062228501	2	454.245806	906.47706	0.91581	0.000416	-0.99581	-0.00045234	-0.079999	-3.6339E-05	454.2454803029068	12.366	0.1679	12.357	12.261	12.429	-0.0088415	1392	43	0.780288	0.025917947	0.77876854	317.28525	0	10.53891						188	8	3	NaN	NaN	NaN	0.03533	1	6062	6062		53.14	12.987	1	39257			23675	4077	13655	14052	18869	18869					0.02008006512448901
SASTPLTIWA	10	Unmodified	_SASTPLTIWA_					0	0	0		ENST00000555617.5_1_14:74759536-74766325:-|nuORF	ENST00000555617.5_1_14:74759536-74766325:-|nuORF	ENST00000555617.5_1_14:74759536-74766325:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5516872628	1	1046.55169	1045.54441	1.4183	0.0014843	0.35343	0.00036988	1.7717	0.0018542	1046.5524595880174	31.887	0.16895	31.887	31.839	32.008	0	159	97	1.5245869	0.056657672	1.5245869	309.35602	0	11.4964905						250	8	2	NaN	NaN	NaN	0.62764	1	10452	10452		13.003	0	1	24561			23676	7571	13656	14053	18870	18870					0.023460367233838042
SATADTSIF	9	Unmodified	_SATADTSIF_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4309034251	1	912.430903	911.423627	2.0132	0.0018369	-0.87753	-0.00080068	1.1357	0.0010362	912.4294318310156	23.248	0.16888	23.234	23.186	23.355	-0.013294	399	58	1.382264	0.033943772	1.3807446	281.01398	0	6.900757						271	8	4	NaN	NaN	NaN	0.025843	1	6121	6121		64.55	20.248	1	35620			23677	553	13657	14054	18871	18871					-0.035627909900881605
SATADTSIF	9	Unmodified						0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.430903	911.423627	2.2292	0.002034	-0.60348	-0.00055064	1.6257	0.0014834	912.430351795609	23.224	0.24117	23.224	23.2	23.441	0	399	61	1.382264	0.03573215	1.382264	281.01398		7.2643433	-0.0051417	0.00010141	0.00075972	NaN	64.55	289	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38787			23678	553	13657	14054							-0.035627909900881605
SATDLVFLI	9	Unmodified	_SATDLVFLI_					0	0	0		ENSG00000162510|ENST00000373765|MATN1	ENSG00000162510|ENST00000373765|MATN1	ENSG00000162510|ENST00000373765|MATN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5506246303001	1	978.550625	977.543348	1.3597	0.0013306	-0.84692	-0.00082875	0.51281	0.00050182	978.5491721843074	31.21	0.072405	31.205	31.181	31.253	-0.0050716	195	82	1.5033154	0.047903895	1.501796	305.316	0	9.729065						167	4	3	NaN	NaN	NaN	0.14301	1	7663	7663		29.598	14.423	1	22569			23679	4140	13658	14055	18872	18872					0.053678223544807224
SATFLSASNK	10	Unmodified	_SATFLSASNK_					0	0	0			REV__ENSG00000123562|ENST00000441076|MORF4L2	REV__ENSG00000123562|ENST00000441076|MORF4L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.2667386302	2	513.266739	1024.51892	1.9153	0.00098308	-11.524	-0.0059148	-9.6085	-0.0049317	513.2606113355171	17.834	0.31192	17.82	17.772	18.084	-0.013786	1308	61	0.83204526	0.03690952	0.8305259	337.74878	0	14.982544						467	14	5	NaN	NaN	NaN	0.088985	1	9369	9369		47.482	4.4868	1	141010	+		23680	9360	13659	14056	18873	18873					0.007645622009476938
SATLVDEVF	9	Unmodified	_SATLVDEVF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4935036819	1	980.493504	979.486227	2.0845	0.0020439	-1.2859	-0.0012608	0.79869	0.00078311	980.49224658191	28.991	0.2655	28.991	28.918	29.184	0	282	172	1.4517976	0.101507306	1.4517976	294.84485	0	20.615051						751	12	5	NaN	NaN	NaN	0.03623	1	7861	7861		52.758	2.9254	1	277040			23681	2157	13660	14057	18874	18874					-0.004336449219067617
SATLVDEVF	9	Unmodified	_SATLVDEVF_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4935036819	1	980.493504	979.486227	1.896	0.001859	-1.0351	-0.0010149	0.86082	0.00084403	980.4925650754932	28.99	0.28961	28.982	28.934	29.224	-0.0077229	282	163	1.4517976	0.096149445	1.4502782	294.84485	0	19.526917						753	13	5	NaN	NaN	NaN	0.023828	1	7697	7697		67.154	22.852	1	270220			23682	2157	13660	14057	18875	18875					-0.004336449219067617
SATPDTPTL	9	Unmodified	_SATPDTPTL_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;OBSCN-CASZ1|1|fusion	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4465534893001	1	902.446553	901.439277	1.7708	0.0015981	-0.98137	-0.00088563	0.78947	0.00071246	902.4451783036211	20.237	0.21633	20.237	20.165	20.381	0	381	82	1.3929803	0.048230886	1.3929803	283.23926	0	9.806946						248	10	2	NaN	NaN	NaN	0.074859	1	6101	6101		39.459	11.67	1	35966			23683	7291	13661	14058	18876	18876					-0.015385044730351183
SATPDTPTL	9	Unmodified	_SATPDTPTL_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;OBSCN-CASZ1|1|fusion	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4465534893001	1	902.446553	901.439277	1.8173	0.00164	-1.2857	-0.0011603	0.53153	0.00047968	902.4454043099305	20.261	0.16845	20.246	20.15	20.319	-0.014141	381	76	1.3929803	0.044648647	1.3914609	283.23926	0	9.078583						263	8	2	NaN	NaN	NaN	0.016254	1	5980	5980		76.739	18.504	1	36142			23684	7291	13661	14058	18877	18877					-0.015385044730351183
SATVKDYEL	9	Unmodified	_SATVKDYEL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.26112193605	2	513.261122	1024.50769	2.5657	0.0013169	-2.221	-0.00114	0.34471	0.00017693	513.2600255709457	17.813	0.23985	17.813	17.765	18.005	0	1308	55	0.83204526	0.033218563	0.83204526	337.74878	0	13.484283						414	11	4	NaN	NaN	NaN	0.04743	1	9551	9551		48.002	17.211	1	127350			23685	3759;7960	13662	14059	18878	18878					-0.0035825989318709617
SATVKDYEL	9	Unmodified						0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.261122	1024.50769	1.9154	0.00098308	-0.58082	-0.00029811	1.3345	0.00068497	513.2606113355171	17.834	0.31192	17.82	17.772	18.084	-0.013786	1308	61	0.83204526	0.03690952	0.8305259	337.74878		14.982544	0.0035419	0.0011466	-0.00075972	NaN	48.002	467	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141010			23686	3759;7960	13662	14059							-0.0035825989318709617
SATVLFAYE	9	Unmodified	_SATVLFAYE_					0	0	0			REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4985890598	1	1000.49859	999.491313	1.8373	0.0018382	-6.0825	-0.0060856	-4.2452	-0.0042473	1000.492458762861	15.412	0.14383	15.4	15.328	15.472	-0.012201	282	46	1.4517976	0.026686788	1.4502782	294.76297	0	5.418335						127	7	2	NaN	NaN	NaN	0.45297	1	8378	8378		11.548	0	1	11405	+		23687	10156	13663	14060	18879	18879					-0.008453410592892396
SATVLFAYE	9	Unmodified						0	0	0			REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.49859	999.491313	1.8531	0.0018541	-6.4808	-0.0064841	-4.6277	-0.00463	1000.4916361219512	15.414	0.16819	15.414	15.366	15.534	0	285	43	1.4500183	0.024911642	1.4500183	294.4017		5.057892	0.0069808	-0.00022161	-0.00012994	NaN	11.548	126	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9870.8	+		23688	10156	13663	14060							-0.008453410592892396
SATVLFAYE	9	Unmodified						0	0	0			REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	REV__ENST00000473707.5_1_7:140051761-140069464:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.49859	999.491313	1.8373	0.0018382	-6.0825	-0.0060856	-4.2452	-0.0042473	1000.492458762861	15.412	0.14383	15.4	15.328	15.472	-0.012201	282	46	1.4517976	0.026686788	1.4502782	294.76297		5.418335	-0.0069808	0.0001769	0.00012994	NaN	11.548	127	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11405	+		23689	10156	13663	14060							-0.008453410592892396
SAVATAEAL	9	Unmodified	_SAVATAEAL_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4410741809	1	832.441074	831.433798	2.0133	0.0016759	0.55631	0.00046309	2.5696	0.002139	832.442101293828	19.732	0.12008	19.732	19.708	19.828	0	477	40	1.3357477	0.023291588	1.3357477	271.9456	0	4.7419434						83	6	2	NaN	NaN	NaN	0.062072	1	5153	5153		41.785	12.186	1	6625.6			23690	5303	13664	14061	18880	18880					0.011338167351482298
SAVATAEAL	9	Unmodified						0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.441074	831.433798	1.6734	0.001393	0.049173	4.0934E-05	1.7226	0.0014339	832.4409576187866	19.731	0.096292	19.717	19.717	19.813	-0.014141	471	43	1.3393306	0.02507925	1.3378111	272.67502		5.105896	-0.0075722	-0.0001464	0.0010317	NaN	41.785	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5970			23691	5303	13664	14061							0.011338167351482298
SAVATEASL	9	Unmodified	_SAVATEASL_					0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.435988803	1	848.435989	847.428712	1.4573	0.0012364	0.60527	0.00051353	2.0625	0.0017499	848.4373793037903	19.034	0.096056	19.02	18.996	19.092	-0.014059	468	49	1.3411216	0.028656006	1.3396021	272.95584	0	5.832306						94	5	2	NaN	NaN	NaN	0.14301	1	5224	5224		29.598	0	1	7798.1			23692	3009	13665	14062	18881	18881					-0.0011048712748333855
SAVATEASL	9	Unmodified						0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	848.435989	847.428712	1.9941	0.0016919	-0.070661	-5.9951E-05	1.9235	0.001632	848.4355669468355	19.012	0.095922	19.012	18.988	19.084	0	468	52	1.3411216	0.030451775	1.3411216	272.95584		6.197815	-0.0037593	-0.00022139	0.00075972	NaN	29.598	69	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4563.6			23693	3009	13665	14062							-0.0011048712748333855
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.1302	0.0010178	-1.9242	-0.0017328	-0.79395	-0.00071498	900.5373453492215	33.094	0.048256	33.094	33.094	33.142	0	336	46	1.419741	0.02674079	1.419741	288.68982	0	5.4374695						64	3	2	NaN	NaN	NaN	0.14301	1	6066	6066		29.598	1.8095	1	7495.2			23694	7837	13666	14063	18882	18882					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.9751	0.0017787	-1.5836	-0.0014261	0.39151	0.00035257	900.5385690309106	34.589	0.048252	34.589	34.565	34.614	0	336	40	1.419741	0.023172855	1.419741	288.68982	0	4.711975						54	3	2	NaN	NaN	NaN	0.14301	1	6067	6067		29.598	14.136	1	3199.3			23695	7837	13666	14063	18883	18883					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.2635	0.0011378	-0.24983	-0.00022498	1.0136	0.00091282	900.5402401891627	34.01	0.072422	34.01	34.01	34.083	0	333	37	1.4215236	0.021389246	1.4215236	289.05228	0	4.3492737						58	4	2	NaN	NaN	NaN	0.36492	1	6069	6069		15.175	3.6269	1	3472.9			23696	7837	13666	14063	18884	18884					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.183	0.0010653	0.28792	0.00025928	1.4709	0.0013246	900.5405823279499	33.021	0.096565	33.021	32.949	33.045	0	339	46	1.4179583	0.02674079	1.4179583	288.3273	0	5.4374695						121	5	2	NaN	NaN	NaN	0.25448	1	6071	6071		21.835	0.063931	1	13036			23697	7837	13666	14063	18885	18885					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.4592	0.0013141	0.050629	4.5594E-05	1.5099	0.0013597	900.5390500779398	32.611	0.072433	32.611	32.587	32.659	0	339	55	1.4179583	0.032090664	1.4179583	288.3273	0	6.5253296						108	4	3	NaN	NaN	NaN	0.14301	1	6072	6072		29.598	10.48	1	11503			23698	7837	13666	14063	18886	18886					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.0175	0.00091631	1.1578	0.0010427	2.1753	0.001959	900.5404308235836	33.914	0.0965	33.914	33.866	33.962	0	336	40	1.419741	0.023172855	1.419741	288.6898	0	4.711975						80	5	2	NaN	NaN	NaN	0.20577	1	6075	6075		24.961	9.4983	1	5288.6			23699	7837	13666	14063	18887	18887					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	1.179	0.0010617	-2.4017	-0.0021629	-1.2228	-0.0011012	900.5379568652444	33.213	0.096546	33.21	33.162	33.259	-0.0024757	333	46	1.4215236	0.026737928	1.4200041	289.05228	0	5.4368896						102	5	2	NaN	NaN	NaN	0.20577	1	5951	5951		24.961	3.126	1	9480.2			23700	7837	13666	14063	18888	18888					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	0.85522	0.00077016	-0.89423	-0.00080529	-0.039011	-3.5131E-05	900.5390036075621	31.838	0.048254	31.833	31.833	31.881	-0.0044155	336	55	1.419741	0.032087207	1.4182216	288.68982	0	6.5246277						103	3	2	NaN	NaN	NaN	0.043119	1	5953	5953		49.833	9.6791	1	22253			23701	7837	13666	14063	18889	18889					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	0.8148	0.00073376	-0.72557	-0.00065341	0.089232	8.0357E-05	900.539252055432	31.717	0.072458	31.712	31.712	31.785	-0.0044155	336	58	1.419741	0.03387165	1.4182216	288.68982	0	6.8874817						142	4	2	NaN	NaN	NaN	0.043119	1	5954	5954		49.833	9.6791	1	33242			23702	7837	13666	14063	18890	18890					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	0.90778	0.00081749	-0.25602	-0.00023056	0.65176	0.00058693	900.539719952786	31.958	0.14476	31.954	31.93	32.075	-0.0037613	333	82	1.4215236	0.048153877	1.4200041	289.05228	0	9.791626						193	7	2	NaN	NaN	NaN	0.56671	1	5955	5955		6.8632	0	1	29425			23703	7837	13666	14063	18891	18891					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	1.1695	0.0010532	-0.4152	-0.00037391	0.75432	0.0006793	900.5395068405355	32.537	0.12061	32.534	32.534	32.655	-0.0031052	336	49	1.419741	0.028524995	1.4182216	288.68982	0	5.8002625						151	6	2	NaN	NaN	NaN	0.062072	1	5956	5956		41.785	17.222	1	19146			23704	7837	13666	14063	18892	18892					0.07899839700041866
SAVELVVAL	9	Unmodified	_SAVELVVAL_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	1.2857	0.0011579	-0.076236	-6.8653E-05	1.2095	0.0010892	900.5412202412424	33.816	0.048294	33.814	33.814	33.863	-0.0018463	333	46	1.4215236	0.026735067	1.4200041	289.05228	0	5.43631						65	3	2	NaN	NaN	NaN	0.14301	1	5957	5957		29.598	6.4807	1	6233.9			23705	7837	13666	14063	18893	18893					0.07899839700041866
SAVELVVAL	9	Unmodified						0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	1.0779	0.0009707	0.7753	0.00069819	1.8532	0.0016689	900.5409413342179	33.19	0.048267	33.19	33.166	33.214	0	336	46	1.419741	0.02674079	1.419741	288.6898		5.4374695	-0.01016	0.0016823	-0.00013155	NaN	24.961	81	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6862.1			23706	7837	13666	14063							0.07899839700041866
SAVELVVAL	9	Unmodified						0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	1.1752	0.0010584	-0.88585	-0.00079774	0.28939	0.00026061	900.5391470145788	31.646	0.14483	31.646	31.573	31.718	0	336	58	1.419741	0.03387165	1.419741	288.68982		6.8874817	-0.033457	-4.7611E-05	0.00075972	NaN	49.833	199	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53880			23707	7837	13666	14063							0.07899839700041866
SAVELVVAL	9	Unmodified						0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	1.2897	0.0011615	-0.042601	-3.8364E-05	1.2471	0.0011231	900.539995045892	31.959	0.14484	31.959	31.887	32.032	0	339	79	1.4179583	0.04637289	1.4179583	288.3273		9.429474	0.063067	0.00046039	-0.00013164	NaN	49.833	191	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27523			23708	7837	13666	14063							0.07899839700041866
SAVEWEETL	9	Unmodified	_SAVEWEETL_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.4942319634	1	1063.49423	1062.48696	1.882	0.0020015	2.3898	0.0025415	4.2718	0.0045431	1063.4944517373262	26.167	0.09656	26.156	26.131	26.228	-0.011135	198	79	1.5015416	0.04610765	1.5000222	304.6166	0	9.353821						130	5	2	NaN	NaN	NaN	0.030669	1	10958	10958		58.235	5.6114	1	29820			23709	6001	13667	14064	18894	18894					-0.0417885027286502
SAVGTFRMRH	10	Unmodified	_SAVGTFRMRH_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.3009241860501	2	581.300924	1160.5873	1.3865	0.00080598	-9.5808	-0.0055693	-8.1943	-0.0047634	581.2953529103889	15.124	0.19213	15.112	15.04	15.232	-0.011738	1242	52	0.87260187	0.031303644	0.8710824	353.66068	0	12.687164						164	9	2	NaN	NaN	NaN	0.64158	1	14655	14655		12.049	0.30984	1	18652			23710	2770	13668	14065	18895	18895					0.013425282998241528
SAVPSDPAM	9	Oxidation (M)	_SAVPSDPAM(Oxidation (M))_		SAVPSDPAM(1)		SAVPSDPAM(67)	0	0	1		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	890.3924094288001	1	890.392409	889.385133	1.8888	0.0016818	-1.0196	-0.00090782	0.86924	0.00077396	890.3920302825579	15.654	0.21612	15.654	15.582	15.798	0	435	97	1.360811	0.057293653	1.360811	276.75455	0	11.652069						307	10	3	NaN	NaN	NaN	0.023828	1	5923	5923		67.154	31.858	1	27299			23711	5698	13669	14066	18896	18896		583			-0.06398419896254381
SAVPSDPAM	9	Oxidation (M)	_SAVPSDPAM(Oxidation (M))_		SAVPSDPAM(1)		SAVPSDPAM(61)	0	0	1		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.3924094288001	1	890.392409	889.385133	1.8985	0.0016904	-0.17599	-0.0001567	1.7225	0.0015337	890.3924124874156	15.652	0.14393	15.639	15.567	15.711	-0.012611	477	97	1.3357477	0.057287574	1.3342283	271.65732	0	11.650848						305	7	2	NaN	NaN	NaN	0.028349	1	5803	5803		61.271	29.71	1	32339			23712	5698	13669	14066	18897	18897		583			-0.06398419896254381
SAVPSDPAM	9	Unmodified	_SAVPSDPAM_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.3974948067	1	874.397495	873.390218	1.2678	0.0011086	1.8155	0.0015875	3.0833	0.0026961	874.3987229266875	18.938	0.1441	18.924	18.9	19.044	-0.014059	426	100	1.3661768	0.059061885	1.3646574	277.9233	0	12.015076						261	7	3	NaN	NaN	NaN	0.062072	1	5572	5572		41.785	10.223	1	25084			23713	5698	13669	14067	18898	18898					-0.051541160336455505
SAVPSDPAM	9	Unmodified						0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	874.397495	873.390218	1.8484	0.0016163	0.79362	0.00069394	2.6421	0.0023102	874.3980456626048	18.94	0.14399	18.94	18.892	19.036	0	426	94	1.3661768	0.055482388	1.3661768	277.92334		11.286865	0.0082707	-0.00050846	0.00075972	NaN	41.785	298	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27039			23714	5698	13669	14067							-0.051541160336455505
SAVSTSFLI	9	Unmodified	_SAVSTSFLI_					0	0	0		ENST00000578204.1_1_17:57682500-57682581:+|nuORF	ENST00000578204.1_1_17:57682500-57682581:+|nuORF	ENST00000578204.1_1_17:57682500-57682581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.75547545215005	2	462.755475	923.496398	0.32288	0.00014941	-6.6769	-0.0030898	-6.354	-0.0029404	462.7524130140603	31.018	0.09656	31.018	30.97	31.066	0	1365	40	0.7969414	0.024041891	0.7969414	323.96783	0	9.773376						82	5	2	NaN	NaN	NaN	0.39244	1	6473	6473		14.042	0.30454	1	11669			23715	7671	13670	14068	18899	18899					0.03158962803343002
SAVTPDIPL	9	Unmodified	_SAVTPDIPL_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5036744377002	1	912.503674	911.496398	1.6434	0.0014996	-0.22287	-0.00020337	1.4205	0.0012962	912.5024653185645	27.06	0.048302	27.06	27.036	27.084	0	369	43	1.4001206	0.024983287	1.4001206	284.6439	0	5.0791016						54	3	2	NaN	NaN	NaN	0.16171	1	6253	6253		27.789	1.0573	1	3824.2			23716	4785	13671	14069	18900	18900					0.03710962803347684
SAVTTFEAL	9	Unmodified	_SAVTTFEAL_					0	0	0		ENST00000480686.5_1_1:45110332-45115698:+|nuORF;ENST00000474064.5_1_1:45098020-45115698:+|nuORF;ENST00000475378.5_1_1:45097966-45116444:+|nuORF;nc|ENSG00000187147|Q5VTB9-3|RNF220;ENSG00000187147|ENST00000361799|RNF220	ENST00000480686.5_1_1:45110332-45115698:+|nuORF	ENST00000480686.5_1_1:45110332-45115698:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4829389956	1	938.482939	937.475663	2.1823	0.002048	-1.8701	-0.001755	0.31221	0.000293	938.4811880589842	26.263	0.19303	26.252	26.204	26.397	-0.011137	336	58	1.419741	0.033868074	1.4182216	288.5137	0	6.8825073						187	9	2	NaN	NaN	NaN	0.032764	1	6626	6626		55.494	10.855	1	29322			23717	5498	13672	14070	18901	18901					0.004423724236630733
SAVTTFEAL	9	Unmodified						0	0	0		ENST00000480686.5_1_1:45110332-45115698:+|nuORF;ENST00000474064.5_1_1:45098020-45115698:+|nuORF;ENST00000475378.5_1_1:45097966-45116444:+|nuORF;nc|ENSG00000187147|Q5VTB9-3|RNF220;ENSG00000187147|ENST00000361799|RNF220	ENST00000480686.5_1_1:45110332-45115698:+|nuORF	ENST00000480686.5_1_1:45110332-45115698:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	938.482939	937.475663	1.9513	0.0018313	-1.202	-0.0011281	0.74934	0.00070324	938.4824315335491	26.239	0.14481	26.239	26.215	26.36	0	339	61	1.4179583	0.03565252	1.4179583	288.15143		7.2451477	-0.0063886	0.00039874	-0.00013164	NaN	55.494	184	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29553			23718	5498	13672	14070							0.004423724236630733
SAVVDFEAL	9	Unmodified	_SAVVDFEAL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4829389956	1	950.482939	949.475663	1.8275	0.001737	-1.5544	-0.0014774	0.27309	0.00025957	950.4813040822656	28.605	0.14477	28.605	28.556	28.701	0	303	88	1.4393384	0.05166042	1.4393384	292.4427	0	10.496307						362	7	4	NaN	NaN	NaN	0.062072	1	7069	7069		41.785	5.198	1	71272			23719	902	13673	14071	18902	18902					-0.001096275763416088
SAVVDFEAL	9	Unmodified	_SAVVDFEAL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4829389956	1	950.482939	949.475663	1.3011	0.0012367	-1.2604	-0.001198	0.040747	3.8729E-05	950.4816409711402	28.604	0.21715	28.596	28.547	28.765	-0.0083504	300	106	1.4411188	0.062348843	1.4395994	292.8044	0	12.667938						420	10	4	NaN	NaN	NaN	0.074859	1	6940	6940		39.459	5.02	1	75832			23720	902	13673	14071	18903	18903					-0.001096275763416088
SAVVHEYAL	9	Unmodified	_SAVVHEYAL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.75854945734994	2	494.758549	987.502546	2.4453	0.0012098	-0.78213	-0.00038696	1.6632	0.00082287	494.7582588215428	18.748	0.33594	18.748	18.7	19.036	0	1305	79	0.83389086	0.047982335	0.83389086	338.66605	0	19.486969						457	15	5	NaN	NaN	NaN	0.0094682	1	8124	8124		93.472	56.169	1	165920			23721	613	13674	14072	18904	18904					0.008294810348388637
SAVVHEYAL	9	Unmodified	_SAVVHEYAL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.75854945734994	2	494.758549	987.502546	1.5934	0.00078835	-0.45117	-0.00022322	1.1422	0.00056513	494.7580839437849	18.77	0.19214	18.756	18.708	18.9	-0.014059	1305	85	0.83389086	0.051673353	0.8323714	338.66605	0	20.985962						415	9	4	NaN	NaN	NaN	0.042816	1	7963	7963		49.961	16.536	1	172760			23722	613	13674	14072	18905	18905					0.008294810348388637
SAWLEWAL	8	Unmodified	_SAWLEWAL_					0	0	0		ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000503063.5_1_17:48629318-48633020:+|nuORF	ENST00000503063.5_1_17:48629318-48633020:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4934441023998	1	975.493444	974.486168	1.1528	0.0011246	-1.0323	-0.001007	0.12048	0.00011752	975.4922260315554	34.975	0.14466	34.975	34.951	35.096	0	231	52	1.4820169	0.030193806	1.4820169	301.0035	0	6.132477						165	7	3	NaN	NaN	NaN	0.45125	1	7733	7733		33.698	11.572	1	14879			23723	341	13675	14073	18906	18906					-0.0020960013126796184
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7560067684	2	550.756007	1099.49746	2.2479	0.001238	-0.32993	-0.00018171	1.9179	0.0010563	550.7557172209475	22.983	0.31314	22.983	22.935	23.248	0	1233	124	0.87812483	0.0755378	0.87812483	356.1312	0	30.63504						763	14	4	NaN	NaN	NaN	0.025843	1	12817	12817		64.55	21.555	1	629950			23724	2057	13676	14074	18907	18907					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.5047370701998	1	1100.50474	1099.49746	2.048	0.0022539	0.25356	0.00027904	2.3016	0.0025329	1100.5049061615796	22.959	0.16846	22.959	22.935	23.103	0	111	58	1.5529068	0.033603072	1.5529068	314.90103	0	6.814087						192	8	3	NaN	NaN	NaN	0.021105	1	12818	12818		70.6	34.365	1	20382			23725	2057	13676	14074	18908	18908					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7560067684	2	550.756007	1099.49746	2.2102	0.0012173	-0.79949	-0.00044032	1.4107	0.00077694	550.7557305404671	23.007	0.3616	22.993	22.945	23.306	-0.01354	1233	100	0.87812483	0.060765862	0.8766054	356.1312	0	24.644104						743	16	4	NaN	NaN	NaN	0.030391	1	12487	12487		58.599	22.013	1	639520			23726	2057	13676	14074	18909	18909					-0.048308228277846865
SAYEFYHAL	9	Unmodified	_SAYEFYHAL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1100.5047370701998	1	1100.50474	1099.49746	1.9654	0.0021629	-0.099522	-0.00010952	1.8659	0.0020534	1100.5052929285316	23.007	0.14446	22.993	22.969	23.113	-0.01354	108	55	1.5546752	0.031832814	1.5531558	315.2596	0	6.4551086						179	7	3	NaN	NaN	NaN	0.002833	1	12488	12488		108.51	75.084	1	20909			23727	2057	13676	14074	18910	18910					-0.048308228277846865
SAYLSCLQRE	10	Unmodified	_SAYLSCLQRE_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.28460541985	2	585.284605	1168.55466	1.4318	0.00083803	-3.2955	-0.0019288	-1.8636	-0.0010908	585.283274823447	11.142	0.19176	11.135	11.087	11.279	-0.0071888	1164	43	0.9204082	0.025708497	0.91888875	373.0064	0	10.418701						192	9	4	NaN	NaN	NaN	0.6772	1	14901	14901		9.6116	0.64966	1	17288			23728	4320	13677	14075	18911	18911					-0.022877236136991996
SCASFSGS	8	Unmodified	_SCASFSGS_					0	0	0		ENST00000463900.5_1_2:74756401-74756618:-|nuORF	ENST00000463900.5_1_2:74756401-74756618:-|nuORF	ENST00000463900.5_1_2:74756401-74756618:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.2821306979001	1	745.282131	744.274854	2.3654	0.0017629	1.4988	0.001117	3.8641	0.0028799	745.2823249078501	26.07	0.048286	26.059	26.035	26.083	-0.011137	654	76	1.2297117	0.04507959	1.2281922	250.8338	0	9.195236						90	3	2	NaN	NaN	NaN	0.84727	1	3890	3890		1.2418	0	1	8868.9			23729	7094	13678	14076	18912	18912					-0.10751220164627284
SCCAGSST	8	Unmodified	_SCCAGSST_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.2385513236999	1	715.238551	714.231275	2.0582	0.0014721	-2.3491	-0.0016801	-0.2909	-0.00020806	715.2355815474449	25.949	0.096535	25.938	25.865	25.962	-0.0116	714	79	1.1936152	0.046985745	1.1920958	243.65613	0	9.591324						104	5	2	NaN	NaN	NaN	0.84945	1	3427	3427		0	0	1	9319.6			23730	2762	13679	14077	18913	18913					-0.13727152933438447
SCCGGGST	8	Unmodified	_SCCGGGST_					0	0	0			REV__ENSG00000080371|ENST00000261263|RAB21	REV__ENSG00000080371|ENST00000261263|RAB21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2123365731999	1	671.212337	670.20506	1.9759	0.0013263	-3.699	-0.0024828	-1.723	-0.0011565	671.2098626810969	25.998	0.14481	25.987	25.914	26.059	-0.011137	780	91	1.1538198	0.05433643	1.1523004	235.82353	0	11.105545						247	7	2	NaN	NaN	NaN	0.84945	1	2510	2510		0	0	1	18691	+		23731	8648	13680	14078	18914	18914					-0.14323422104916972
SCDLTSSA	8	Unmodified	_SCDLTSSA_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3189101347	1	783.31891	782.311634	1.2338	0.00096644	-2.4695	-0.0019344	-1.2357	-0.00096793	783.3178090990178	39.767	0.28917	39.767	39.694	39.983	0	666	106	1.2224985	0.06307769	1.2224985	249.14308	0	12.855118						449	13	3	NaN	NaN	NaN	0.8439	1	4519	4519		3.1533	0	1	134960			23732	5698	13681	14079	18915	18915					-0.08822968338733972
SCGGSKLA	8	Unmodified	_SCGGSKLA_					0	0	0		ENSG00000139269|ENST00000266646|INHBE	ENSG00000139269|ENST00000266646|INHBE	ENSG00000139269|ENST00000266646|INHBE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3501506836001	1	722.350151	721.342874	0.91183	0.00065866	3.5578	0.00257	4.4696	0.0032286	722.3527525181715	32.127	0.096527	32.123	32.075	32.172	-0.0037575	618	55	1.2513325	0.032417417	1.2498131	255.39069	0	6.616226						81	5	2	NaN	NaN	NaN	0.8439	1	3532	3532		3.1533	0	1	6734.2			23733	3207	13682	14080	18916	18916					-0.028943505139750414
SCGGSKLA	8	Unmodified						0	0	0		ENSG00000139269|ENST00000266646|INHBE	ENSG00000139269|ENST00000266646|INHBE	ENSG00000139269|ENST00000266646|INHBE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.350151	721.342874	0.91411	0.00066031	3.7103	0.0026801	4.6244	0.0033404	722.352691682482	32.128	0.19304	32.128	32.08	32.273	0	621	52	1.2495319	0.030614734	1.2495319	255.02318		6.2483215	0.0024285	2.8232E-05	-0.00014062	NaN	3.1533	156	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15031			23734	3207	13682	14080							-0.028943505139750414
SCGPCGDC	8	Unmodified	_SCGPCGDC_					0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.2000573273999	1	741.200057	740.192781	1.6238	0.0012036	-9.2325	-0.0068431	-7.6087	-0.0056396	741.194421502188	58.581	0.12	58.581	58.557	58.677	0	660	43	1.2261056	0.025245905	1.2261056	250.12321	0	5.150116						75	6	2	NaN	NaN	NaN	0.84945	1	3907	3907		0	0	1	5147.8	+		23735	11870	13683	14081	18917	18917					-0.18770781839612027
SCGPCGDC	8	Unmodified	_SCGPCGDC_					0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.2000573273999	1	741.200057	740.192781	0.2762	0.00020472	-9.7533	-0.0072292	-9.4771	-0.0070245	741.1936678754593	58.578	0.096066	58.578	58.554	58.65	-0.00045395	654	37	1.2297117	0.021634698	1.2281922	250.85887	0	4.413437						75	5	3	NaN	NaN	NaN	0.84945	1	3833	3833		0	0	1	4278.3	+		23736	11870	13683	14081	18918	18918					-0.18770781839612027
SCGPCGDC	8	Unmodified						0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.200057	740.192781	1.6238	0.0012036	-9.2325	-0.0068431	-7.6087	-0.0056396	741.194421502188	58.581	0.12	58.581	58.557	58.677	0	660	43	1.2261056	0.025245905	1.2261056	250.12321		5.150116	0.0013973	0.000228	-0.0010434	NaN	0	75	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5147.8	+		23737	11870	13683	14081							-0.18770781839612027
SCGPCGDC	8	Unmodified						0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.200057	740.192781	0.2762	0.00020472	-9.7533	-0.0072292	-9.4771	-0.0070245	741.1936678754593	58.578	0.096066	58.578	58.554	58.65	-0.00045395	654	37	1.2297117	0.021634698	1.2281922	250.85887		4.413437	-0.0013973	-0.00015807	0.0010434	NaN	0	75	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4278.3	+		23738	11870	13683	14081							-0.18770781839612027
SCLASIFF	8	Unmodified	_SCLASIFF_					0	0	0		ENST00000490424.1_1_3:62521978-62535788:-|nuORF	ENST00000490424.1_1_3:62521978-62535788:-|nuORF	ENST00000490424.1_1_3:62521978-62535788:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4331520315001	1	887.433152	886.425876	1.0738	0.00095297	-4.7358	-0.0042027	-3.6619	-0.0032497	887.4282015504666	31.5	0.12067	31.495	31.447	31.568	-0.0044174	396	49	1.3840506	0.028585792	1.3825312	281.49524	0	5.8139343						100	6	2	NaN	NaN	NaN	0.80071	1	5767	5767		9.1232	0	1	7356.3			23739	7263	13684	14082	18919	18919					-0.02188033785978405
SCNQVDFPFN	10	Unmodified	_SCNQVDFPFN_					0	0	0			REV__nc|ENSG00000166736|P46098-3|HTR3A	REV__nc|ENSG00000166736|P46098-3|HTR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.83432933740005	3	390.834329	1169.48116	1.0675	0.0004172	-6.124	-0.0023935	-5.0565	-0.0019763	390.83229973094694	32.514	0.14476	32.514	32.466	32.611	0	1494	46	0.7172283	0.027873337	0.7172283	435.9896	0	16.943665						167	7	3	NaN	NaN	NaN	0.65442	1	15457	15457		6.1406	0	1	21862	+		23740	10443	13685	14083	18920	18920					-0.09680272056152717
SCNQVDFPFN	10	Unmodified	_SCNQVDFPFN_					0	0	0			REV__nc|ENSG00000166736|P46098-3|HTR3A	REV__nc|ENSG00000166736|P46098-3|HTR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.83432933740005	3	390.834329	1169.48116	0.87647	0.00034256	-6.5736	-0.0025692	-5.6971	-0.0022266	390.83178006687353	32.513	0.14478	32.51	32.462	32.607	-0.0031052	1494	52	0.7172283	0.03158295	0.71570885	435.98962	0	19.19867						196	7	3	NaN	NaN	NaN	0.65442	1	14919	14919		6.1406	1.5973	1	25270	+		23741	10443	13685	14083	18921	18921					-0.09680272056152717
SCPAFVIC	8	Unmodified	_SCPAFVIC_					0	0	0			REV__ENST00000482098.1_1_3:183171627-183171666:+|nuORF	REV__ENST00000482098.1_1_3:183171627-183171666:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.379007971	1	839.379008	838.371732	-0.16623	-0.00013953	-1.5028	-0.0012614	-1.669	-0.001401	839.3785665501288	46.556	0.16784	46.566	46.494	46.662	0.0098152	516	49	1.3124412	0.028704882	1.3109218	267.16464	0	5.843231						100	8	2	NaN	NaN	NaN	0.84876	1	5116	5116		0.39566	0	1	6746	+		23742	12391	13686	14084	18922	18922					-0.05391949209206359
SCPTIPLLL	9	Unmodified	_SCPTIPLLL_					0	0	0			REV__ENST00000470150.5_1_3:184098136-184100834:+|nuORF	REV__ENST00000470150.5_1_3:184098136-184100834:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.77789630345006	2	478.777896	955.54124	1.5275	0.00073134	-7.1086	-0.0034034	-5.5811	-0.0026721	478.77328229813173	35.82	0.072342	35.82	35.82	35.892	0	1308	25	0.83204526	0.0147637725	0.83204526	338.07178	0	5.998749						40	4	2	NaN	NaN	NaN	0.66529	1	7234	7234		2.1763	0.50597	1	1911.8	+		23743	12320	13687	14085	18923	18923					0.06169070345026739
SCRWVFFLI	9	Unmodified	_SCRWVFFLI_					0	0	0		ENST00000311351.8_1_8:38020978-38021044:-|nuORF	ENST00000311351.8_1_8:38020978-38021044:-|nuORF	ENST00000311351.8_1_8:38020978-38021044:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8100620991002	2	585.810062	1169.60557	1.5871	0.00092974	1.5679	0.00091849	3.155	0.0018482	585.8112574512062	31.259	0.45859	31.259	31.259	31.718	0	1173	106	0.91489893	0.06433731	0.91489893	370.7698	0	26.073181						1094	20	3	NaN	NaN	NaN	0.18779	1	15477	15477		26.115	2.9974	1	603760			23744	6450	13688	14086	18924	18924					0.02755270221837236
SCRYTAGKWN	10	Unmodified	_SCRYTAGKWN_					0	0	0			REV__chr2:161355703-161367478|181|12.38|0.46|4.75|+|2|None,PSMD14|1	REV__chr2:161355703-161367478|181|12.38|0.46|4.75|+|2|None,PSMD14|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.27711473875	2	593.277115	1184.53968	1.0835	0.0006428	1.1042	0.00065511	2.1877	0.0012979	593.2787510848891	32.587	0.19306	32.587	32.514	32.707	0	1179	61	0.9112251	0.036750257	0.9112251	369.22668	0	14.891144						156	9	2	NaN	NaN	NaN	0.507	1	15992	15992		19.164	8.5586	1	21984	+		23745	8225	13689	14087	18925	18925					-0.04521170691032239
SCSDAKSK	8	Unmodified	_SCSDAKSK_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.1921850911	2	413.192185	824.369817	1.2157	0.00050234	2.6933	0.0011128	3.909	0.0016152	413.1934248200907	32.635	0.096558	32.635	32.587	32.683	0	1431	31	0.75620437	0.018538952	0.75620437	307.94882	0	7.549591						76	5	2	NaN	NaN	NaN	0.84512	1	5081	5081		2.4615	0	1	5567.3	+		23746	9416	13690	14088	18926	18926					-0.04939286693456779
SCSDAKSK	8	Unmodified						0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	413.192185	824.369817	1.2157	0.00050234	2.6933	0.0011128	3.909	0.0016152	413.1934248200907	32.635	0.096558	32.635	32.587	32.683	0	1431	31	0.75620437	0.018538952	0.75620437	307.94882		7.549591	0	0	0	NaN	2.4615	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5567.3	+		23747	9416	13690	14088							-0.04939286693456779
SCSGAYGA	8	Unmodified	_SCSGAYGA_					0	0	0			REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.2715660116	1	715.271566	714.26429	1.7016	0.0012171	2.3415	0.0016748	4.0431	0.0028919	715.2724995825197	26.022	0.12068	26.022	25.974	26.094	0	684	64	1.2116731	0.037907362	1.2116731	247.34209	0	7.7381287						130	6	2	NaN	NaN	NaN	0.84876	1	3496	3496		0.39566	0.065779	1	10046	+		23748	12793	13691	14089	18927	18927					-0.10427202819062131
SCSGAYGA	8	Unmodified						0	0	0			REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	715.271566	714.26429	1.7016	0.0012171	2.3415	0.0016748	4.0431	0.0028919	715.2724995825197	26.022	0.12068	26.022	25.974	26.094	0	684	64	1.2116731	0.037907362	1.2116731	247.34209		7.7381287	-0.12706	0.0010765	0.0043701	NaN	0.39566	130	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10046	+		23749	12793	13691	14089							-0.10427202819062131
SCSGAYGA	8	Unmodified						0	0	0			REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.271566	714.26429	1.7143	0.0012262	-0.72706	-0.00052004	0.98723	0.00070614	715.2718554599719	26.287	0.12062	26.276	26.18	26.3	-0.011137	696	55	1.2044523	0.03249383	1.2029328	245.8681		6.6330414	0.12706	-0.0011183	-0.0043701	NaN	0.39566	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7873.7	+		23750	12793	13691	14089							-0.10427202819062131
SCSMPSLYLIF	11	Unmodified	_SCSMPSLYLIF_					0	0	0			REV__ENST00000254322.2_1_19:14626237-14626324:-|nuORF	REV__ENST00000254322.2_1_19:14626237-14626324:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.80378509045	2	630.803785	1259.59302	1.5198	0.00095872	-2.3351	-0.001473	-0.81528	-0.00051428	630.8026866570061	34.71	0.19299	34.71	34.662	34.855	0	1122	49	0.9460945	0.029340029	0.9460945	383.09265	0	11.880371						274	9	4	NaN	NaN	NaN	0.48069	1	17987	17987		19.164	1.1939	1	37479	+		23751	11510	13692	14090	18928	18928					-0.026395540234034343
SCSMPSLYLIF	11	Unmodified						0	0	0			REV__ENST00000254322.2_1_19:14626237-14626324:-|nuORF	REV__ENST00000254322.2_1_19:14626237-14626324:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.803785	1259.59302	1.5198	0.00095872	-2.3351	-0.001473	-0.81528	-0.00051428	630.8026866570061	34.71	0.19299	34.71	34.662	34.855	0	1122	49	0.9460945	0.029340029	0.9460945	383.09265		11.880371	0.001023	0.00051313	-0.00015691	NaN	19.164	274	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37479	+		23752	11510	13692	14090							-0.026395540234034343
SCTCIWSWGW	10	Unmodified	_SCTCIWSWGW_					0	0	0		ENST00000464117.1_1_1:201861023-201861161:+|nuORF	ENST00000464117.1_1_1:201861023-201861161:+|nuORF	ENST00000464117.1_1_1:201861023-201861161:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.74934421675	2	614.749344	1227.48414	1.0101	0.00062096	4.5006	0.0027667	5.5107	0.0033877	614.7518549868598	25.033	0.072392	25.033	25.009	25.081	0	1170	55	0.91673553	0.033064544	0.91673553	371.30984	0	13.392273						69	4	2	NaN	NaN	NaN	0.67523	1	17171	17171		9.746	0.8269	1	13309			23753	7098	13693	14091	18929	18929					-0.1205072020300122
SCYFPRHSLAP	11	Unmodified	_SCYFPRHSLAP_					0	0	0		ENST00000434116.6_1_15:65903875-65903989:+|nuORF	ENST00000434116.6_1_15:65903875-65903989:+|nuORF	ENST00000434116.6_1_15:65903875-65903989:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.54136873363336	3	426.541369	1276.60228	1.5333	0.00065402	-2.7644	-0.0011791	-1.2311	-0.00052511	426.5402893940412	21.994	0.096317	21.994	21.946	22.043	0	1437	46	0.7524962	0.027815938	0.7524962	456.9813	0	16.892242						94	5	2	NaN	NaN	NaN	0.76803	1	18355	18355		0.7918	0.075685	1	7609.8			23754	6985	13694	14092	18930	18930					-0.024960246228374672
SDAATVVI	8	Unmodified	_SDAATVVI_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4196104573001	1	775.41961	774.412334	1.8203	0.0014115	-0.06965	-5.4008E-05	1.7506	0.0013575	775.4189386726322	21.681	0.096361	21.681	21.657	21.754	0	567	40	1.2819146	0.023363829	1.2819146	261.29788	0	4.7623596						77	5	2	NaN	NaN	NaN	0.40747	1	4424	4424		36.036	0	1	6467.9	+		23755	10277	13695	14093	18931	18931					0.016104317064332463
SDAGVEEYDKE	11	Unmodified	_SDAGVEEYDKE_					0	0	0			REV__ENSG00000167553|ENST00000301072|TUBA1C	REV__ENSG00000167553|ENST00000301072|TUBA1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.2620471828001	2	621.262047	1240.50954	1.0866	0.00067508	6.0875	0.003782	7.1742	0.004457	621.2669655841862	20.742	0.12053	20.742	20.694	20.814	0	1170	52	0.91673553	0.031215787	0.91673553	371.26648	0	12.642029						124	6	3	NaN	NaN	NaN	0.77466	1	17535	17535		1.1768	0.13678	1	9357.3	+		23756	10466	13696	14094	18932	18932					-0.10109295665893114
SDAGVEEYDKE	11	Unmodified						0	0	0			REV__ENSG00000167553|ENST00000301072|TUBA1C	REV__ENSG00000167553|ENST00000301072|TUBA1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	621.262047	1240.50954	1.0866	0.00067508	6.0875	0.003782	7.1742	0.004457	621.2669655841862	20.742	0.12053	20.742	20.694	20.814	0	1170	52	0.91673553	0.031215787	0.91673553	371.26648		12.642029	-0.041255	-0.0014743	0.00075972	NaN	1.1768	124	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9357.3	+		23757	10466	13696	14094							-0.10109295665893114
SDAGVEEYDKE	11	Unmodified						0	0	0			REV__ENSG00000167553|ENST00000301072|TUBA1C	REV__ENSG00000167553|ENST00000301072|TUBA1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	621.262047	1240.50954	1.3254	0.0008234	8.4678	0.0052607	9.7932	0.0060841	621.2647920806983	20.839	0.048073	20.825	20.801	20.849	-0.014086	1170	37	0.91673553	0.022038221	0.9152161	371.26648		8.925201	0.041255	0.0014833	-0.00075972	NaN	1.1768	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2875.6	+		23758	10466	13696	14094							-0.10109295665893114
SDCFGTEI	8	Unmodified	_SDCFGTEI_					0	0	0			REV__ENSG00000146166|ENST00000370657|LGSN	REV__ENSG00000146166|ENST00000370657|LGSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.17874336484994	2	436.178743	870.342934	1.8718	0.00081642	-2.0374	-0.00088866	-0.16562	-7.2241E-05	436.17805647936837	25.853	0.096542	25.841	25.817	25.914	-0.0116	1419	55	0.76361835	0.03335917	0.7620989	310.69925	0	13.57312						91	5	2	NaN	NaN	NaN	0.80692	1	5522	5522		8.2903	0	1	9637.7	+		23759	9938	13697	14095	18933	18933					-0.09742395304647289
SDDFAAGT	8	Unmodified	_SDDFAAGT_					0	0	0		CON__P00766	CON__P00766	CON__P00766	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.3155393163	1	783.315539	782.308263	1.1201	0.00087737	2.6373	0.0020659	3.7574	0.0029432	783.3178605717077	40.152	0.24052	40.152	40.152	40.392	0	672	58	1.2188909	0.03427875	1.2188909	248.40784	0	6.985962						233	11	2	NaN	NaN	NaN	0.84692	1	4520	4520		1.4396	0	1	50450		+	23760	185	13698	14096	18934	18934					-0.09159895121081263
SDFDEFERQL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDFDEFERQL_					1	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.2936816622001	2	664.293682	1326.57281	1.5868	0.0010541	-1.3753	-0.00091364	0.21144	0.00014046	664.2924722990664	29.087	0.26547	29.079	29.031	29.296	-0.0077229	1095	58	0.9625867	0.03480178	0.96106726	389.55716	0	14.084259						227	12	2	NaN	NaN	NaN	0.00098176	1	18342	18342		89.374	62.077	1	47530			23761	659	13699	14097	18935	18935					-0.07741310157985026
SDFHGQPI	8	Unmodified	_SDFHGQPI_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4210074408	1	900.421007	899.413731	2.0415	0.0018382	-7.7646	-0.0069915	-5.7232	-0.0051532	900.4144211430471	19.66	0.21613	19.66	19.612	19.828	0	441	79	1.3572328	0.046501517	1.3572328	275.97998	0	9.455627						318	10	3	NaN	NaN	NaN	0.78264	1	6050	6050		11.548	0.94349	1	56340	+		23762	10513	13700	14098	18936	18936					-0.03999934204807687
SDFLVGAFCI	10	Unmodified	_SDFLVGAFCI_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2626103800001	2	536.26261	1070.51067	1.6531	0.00088648	-1.8519	-0.00099308	-0.19879	-0.00010661	536.261931128292	18.554	0.28795	18.54	18.42	18.708	-0.01395	1263	79	0.85970795	0.04791498	0.8581885	348.7789	0	19.438843						307	13	3	NaN	NaN	NaN	0.61246	1	11282	11282		14.042	2.4931	1	59582			23763	1306	13701	14099	18937	18937					-0.021767080400195482
SDMLFKLSR	9	Unmodified	_SDMLFKLSR_					0	0	0			REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.1988314889666	3	366.198831	1095.57467	1.6899	0.00061886	-4.5576	-0.001669	-2.8676	-0.0010501	366.1971071378368	15.918	0.11986	15.918	15.894	16.014	0	1464	31	0.73579943	0.018563092	0.73579943	447.62958	0	11.292999						78	6	2	NaN	NaN	NaN	0.61852	1	12659	12659		2.7042	1.0057	1	6974.1	+		23764	13215	13702	14100	18938	18938					0.030700721169068856
SDMLFKLSR	9	Unmodified						0	0	0			REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	REV__nc|ENSG00000198870|Q8NE28-3|STKLD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	366.198831	1095.57467	1.6899	0.00061886	-4.5576	-0.001669	-2.8676	-0.0010501	366.1971071378368	15.918	0.11986	15.918	15.894	16.014	0	1464	31	0.73579943	0.018563092	0.73579943	447.62958		11.292999	-0.028323	0.00055688	0.00075972	NaN	2.7042	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6974.1	+		23765	13215	13702	14100							0.030700721169068856
SDPLPWPQ	8	Unmodified	_SDPLPWPQ_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	939.4570585961	1	939.457059	938.449782	1.1571	0.001087	-9.8846	-0.0092862	-8.7275	-0.0081991	939.4485915112613	26.94	0.096498	26.94	26.915	27.012	0	333	61	1.4215236	0.035633564	1.4215236	288.8716	0	7.2411804						129	5	3	NaN	NaN	NaN	0.81251	1	6776	6776		7.5404	2.0745	1	8007.5			23766	2848	13703	14101	18939	18939					-0.021904770279661534
SDPQQVVH	8	Unmodified	_SDPQQVVH_					0	0	0		nc|ENSG00000111481|P61923-2|COPZ1;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	nc|ENSG00000111481|P61923-2|COPZ1	nc|ENSG00000111481|P61923-2|COPZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.2248738155	2	455.224874	908.435195	0.20651	9.401E-05	-5.9368	-0.0027026	-5.7303	-0.0026086	455.22230305924086	31.356	0.072407	31.356	31.332	31.404	0	1452	31	0.74322224	0.018552959	0.74322224	302.20364	0	7.5438843						69	4	3	NaN	NaN	NaN	0.83211	1	6203	6203		4.9097	0.94122	1	7149.6			23767	1810	13704	14102	18940	18940					-0.022685491760853438
SDRGPFAARPG	11	Unmodified	_SDRGPFAARPG_					0	0	0			REV__ENST00000537469.2_2_1:32671469-32672149:+|nuORF	REV__ENST00000537469.2_2_1:32671469-32672149:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.7887038803	2	565.788704	1129.56285	0.89505	0.00050641	-6.4774	-0.0036648	-5.5824	-0.0031584	566.2888890991641	20.791	0.16856	20.776	20.728	20.897	-0.014086	1215	70	0.8891654	0.042310774	0.88764596	360.49	0	17.15387						188	8	2	NaN	NaN	NaN	0.6875	1	13618	13618		8.2775	0.68994	1	34220	+		23768	12680	13705	14103	18941	18941					0.0032559141793626623
SDRGPFAARPG	11	Unmodified						0	0	0			REV__ENST00000537469.2_2_1:32671469-32672149:+|nuORF	REV__ENST00000537469.2_2_1:32671469-32672149:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.788704	1129.56285	0.89505	0.00050641	-6.4774	-0.0036648	-5.5824	-0.0031584	566.2888890991641	20.791	0.16856	20.776	20.728	20.897	-0.014086	1215	70	0.8891654	0.042310774	0.88764596	360.49		17.15387	0.0051708	0.0020561	0.00016008	NaN	8.2775	188	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34220	+		23769	12680	13705	14103							0.0032559141793626623
SDSDDAFVIEP	11	Unmodified	_SDSDDAFVIEP_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;CCNB3|p.T485Hfs*37|1|0.3|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;CCNB3|p.K727Nfs*5|1|0.06|ENSG00000147082|chrX:50310350-50310350|G/-|frameshift_variant	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.76168304205	2	597.761683	1193.50881	1.3473	0.00080534	-7.8851	-0.0047134	-6.5379	-0.0039081	597.7575934654723	26.239	0.096506	26.228	26.204	26.3	-0.011137	1179	67	0.9112251	0.04042524	0.90970564	369.1948	0	16.378815						150	5	2	NaN	NaN	NaN	0.7072	1	15622	15622		6.9844	1.7955	1	29244			23770	3582	13706	14104	18942	18942					-0.08020090314948902
SDSDDAFVIEP	11	Unmodified						0	0	0		ENSG00000147082|ENST00000376042|CCNB3;CCNB3|p.T485Hfs*37|1|0.3|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;CCNB3|p.K727Nfs*5|1|0.06|ENSG00000147082|chrX:50310350-50310350|G/-|frameshift_variant	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.761683	1193.50881	1.77	0.001058	-8.8928	-0.0053158	-7.1228	-0.0042577	597.7559296837871	26.239	0.072372	26.239	26.215	26.288	0	1182	73	0.9093879	0.044100344	0.9093879	368.4504		17.867828	0.0056648	-0.00050156	-0.00015889	NaN	6.9844	140	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27555			23771	3582	13706	14104							-0.08020090314948902
SDSLEIWVTD	10	Unmodified	_SDSLEIWVTD_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1164.5419104375	1	1164.54191	1163.53463	2.4559	0.00286	-8.732	-0.010169	-6.2762	-0.0073088	1164.531827266701	29.401	0.096523	29.401	29.377	29.474	0	66	49	1.579413	0.028250933	1.579413	320.05737	0	5.7248535						85	5	2	NaN	NaN	NaN	0.77513	1	15262	15262		1.7022	0.37103	1	6203.9			23772	3592	13707	14105	18943	18943					-0.04059196072648774
SDTDSHREG	9	Unmodified	_SDTDSHREG_					0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.20740934385003	2	502.207409	1002.40027	1.7064	0.00085697	-8.7165	-0.0043775	-7.0101	-0.0035205	502.70359137524576	28.604	0.096512	28.596	28.596	28.692	-0.0083504	1338	31	0.81357855	0.018476725	0.8120591	330.3492	0	7.5023804						46	5	2	NaN	NaN	NaN	0.66196	1	8501	8501		2.4615	0.53688	1	3284.5	+		23773	8392	13708	14106	18944	18944					-0.10083836774697374
SDTDSHREG	9	Unmodified						0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.207409	1002.40027	1.7049	0.00085622	-8.4245	-0.0042309	-6.7196	-0.0033746	502.70437194855805	28.605	0.072412	28.605	28.581	28.653	0	1338	34	0.81357855	0.020325482	0.81357855	330.3492		8.253052	0.0045503	0.00014719	0.00075972	NaN	2.4615	62	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3912.4	+		23774	8392	13708	14106							-0.10083836774697374
SDTDSHREG	9	Unmodified						0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.207409	1002.40027	1.7064	0.00085697	-8.7165	-0.0043775	-7.0101	-0.0035205	502.70359137524576	28.604	0.096512	28.596	28.596	28.692	-0.0083504	1338	31	0.81357855	0.018476725	0.8120591	330.3492		7.5023804	-0.0045503	-0.00014603	-0.00075972	NaN	2.4615	46	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3284.5	+		23775	8392	13708	14106							-0.10083836774697374
SDVCGAAG	8	Unmodified	_SDVCGAAG_					0	0	0		ENST00000591325.1_1_19:58790350-58790572:+|nuORF	ENST00000591325.1_1_19:58790350-58790572:+|nuORF	ENST00000591325.1_1_19:58790350-58790572:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.2715660116	1	679.271566	678.26429	-0.26525	-0.00018018	9.9044	0.0067277	9.6391	0.0065476	679.2784380783365	53.264	0.14396	53.264	53.216	53.36	-0.00053787	642	46	1.2369217	0.02703619	1.2354022	252.74815	0	5.52446						107	7	2	NaN	NaN	NaN	0.84876	1	2713	2713		0.39566	0	1	6356.4			23776	7730	13709	14107	18945	18945					-0.08771202819070822
SDVGSLQARV	10	Unmodified	_SDVGSLQARV_					0	0	0		nc|ENSG00000136944|O60663-2|LMX1B;ENSG00000136944|ENST00000373474|LMX1B;nc|ENSG00000136944|O60663-3|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2776376675	2	516.277638	1030.54072	2.1178	0.0010934	-11.514	-0.0059446	-9.3965	-0.0048512	516.7721824420007	16.107	0.071928	16.094	16.07	16.142	-0.012611	1296	55	0.8394264	0.033200562	0.83790696	340.71857	0	13.475952						71	4	2	NaN	NaN	NaN	0.66626	1	9597	9597		10.36	0.61416	1	7415.1			23777	3061	13710	14108	18946	18946					0.026673669495039576
SDWVRDVAW	9	Unmodified	_SDWVRDVAW_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2723553243501	2	567.272355	1132.53016	2.0354	0.0011546	-1.6467	-0.00093412	0.38868	0.00022049	567.2711165140271	25.371	0.14478	25.371	25.346	25.491	0	1293	55	0.84127116	0.03319341	0.84127116	341.06168	0	13.457001						151	7	3	NaN	NaN	NaN	0.29341	1	14169	14169		19.336	5.8734	1	15799			23778	3940	13711	14109	18947	18947					-0.030806157049028116
SDWVRDVAW	9	Unmodified						0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.272355	1132.53016	1.7324	0.00098276	-1.0469	-0.00059389	0.68552	0.00038888	567.7731347633694	25.37	0.12064	25.358	25.334	25.455	-0.012011	1296	52	0.8394264	0.031354427	0.83790696	340.31378		12.711456	-0.0061304	0.00036612	-0.0016821	NaN	19.336	116	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11214			23779	3940	13711	14109							-0.030806157049028116
SDYGGTGG	8	Unmodified	_SDYGGTGG_					0	0	0		ENST00000331222.5_2_8:1733235-1733967:+|nuORF	ENST00000331222.5_2_8:1733235-1733967:+|nuORF	ENST00000331222.5_2_8:1733235-1733967:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.1404754841	2	357.140475	712.266398	0.89185	0.00031852	5.2514	0.0018755	6.1432	0.002194	357.1424598418948	33.914	0.072384	33.914	33.866	33.938	0	1494	31	0.7172283	0.018581212	0.7172283	292.82712	0	7.5862427						70	4	3	NaN	NaN	NaN	0.8439	1	3463	3463		3.1533	0.36816	1	5325.6			23780	6506	13712	14110	18948	18948					-0.10124450809598784
SEAAEQTLR	9	Unmodified	_SEAAEQTLR_					0	0	0		ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.75399539570003	2	502.753995	1003.49344	1.2919	0.00064951	1.9106	0.00096058	3.2025	0.0016101	502.75491415007207	13.973	0.21585	13.962	13.914	14.13	-0.010672	1323	49	0.8228144	0.029549956	0.82129496	334.09442	0	11.998444						278	10	3	NaN	NaN	NaN	0.026295	1	8551	8551		63.958	2.687	1	57780			23781	6760	13713	14111	18949	18949					-0.008169123214656793
SEAAEQTLR	9	Unmodified						0	0	0		ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.753995	1003.49344	1.7473	0.00087847	-0.68562	-0.0003447	1.0617	0.00053377	502.75392229194375	14.261	0.21617	14.261	14.189	14.405	0	1320	49	0.824661	0.029543579	0.824661	334.8442		11.99585	0.14947	-0.00066536	0.001683	NaN	63.958	264	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47751			23782	6760	13713	14111							-0.008169123214656793
SEADARIFKAW	11	Unmodified	_SEADARIFKAW_					0	0	0		nc|ENSG00000185507|Q92985-3|IRF7;ENST00000532096.1_1_11:614111-615490:-|nuORF;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	nc|ENSG00000185507|Q92985-3|IRF7	nc|ENSG00000185507|Q92985-3|IRF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.33294420845	2	647.332944	1292.65134	1.7649	0.0011425	0.57023	0.00036913	2.3351	0.0015116	647.3340031220944	21.585	0.14458	21.585	21.561	21.705	0	1104	37	0.9570911	0.021986008	0.9570911	387.43787	0	8.900116						141	7	3	NaN	NaN	NaN	0.19446	1	18631	18631		28.236	17.066	1	15226			23783	5419	13714	14112	18950	18950					0.016715869377549097
SEADARIFKAW	11	Unmodified	_SEADARIFKAW_					0	0	0		nc|ENSG00000185507|Q92985-3|IRF7;ENST00000532096.1_1_11:614111-615490:-|nuORF;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	nc|ENSG00000185507|Q92985-3|IRF7	nc|ENSG00000185507|Q92985-3|IRF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.33294420845	2	647.332944	1292.65134	1.6806	0.0010879	-1.501	-0.00097167	0.17954	0.00011622	647.3324267856353	21.633	0.096159	21.619	21.595	21.691	-0.013895	1104	37	0.9570911	0.021986008	0.95557165	387.43787	0	8.900085						113	5	3	NaN	NaN	NaN	0.020247	1	17796	17796		62.076	40.304	1	13642			23784	5419	13714	14112	18951	18951					0.016715869377549097
SEALALTQTW	10	Unmodified	_SEALALTQTW_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1119.5680656084999	1	1119.56807	1118.56079	2.0957	0.0023463	-1.141	-0.0012775	0.95467	0.0010688	1119.5666979482664	27.688	0.12066	27.688	27.639	27.76	0	93	82	1.5635144	0.047726512	1.5635144	316.98505	0	9.676025						332	6	4	NaN	NaN	NaN	4.1821E-14	1	13617	13617		153.63	87.089	1	60578			23785	5898	13715	14113	18952	18952					0.0062511788946721936
SEALALTQTW	10	Unmodified	_SEALALTQTW_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1119.5680656084999	1	1119.56807	1118.56079	1.2712	0.0014232	-0.36328	-0.00040672	0.90791	0.0010165	1119.5676313252634	27.687	0.16889	27.677	27.653	27.822	-0.009552	93	79	1.5635144	0.045951605	1.5619949	316.98505	0	9.316162						351	8	4	NaN	NaN	NaN	0.0001021	1	13213	13213		109.78	61.134	1	59668			23786	5898	13715	14113	18953	18953					0.0062511788946721936
SEAPSGESRKF	11	Unmodified	_SEAPSGESRKF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7911091835	2	597.791109	1193.56767	1.2975	0.00077564	-2.0944	-0.001252	-0.79692	-0.00047639	597.7894974163274	12.052	0.12001	12.052	12.004	12.124	0	1209	43	0.892844	0.02575022	0.892844	361.74722	0	10.433014						82	6	2	NaN	NaN	NaN	0.17797	1	16254	16254		32.377	13.04	1	7335			23787	5340	13716	14114	18954	18954					-0.021375692299670845
SEAPSGESRKF	11	Unmodified	_SEAPSGESRKF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.8631649445333	3	398.863165	1193.56767	1.2388	0.00049413	-0.91736	-0.0003659	0.32149	0.00012823	399.19696546192597	12.052	0.095965	12.052	12.004	12.1	0	1428	37	0.7580582	0.022246659	0.7580582	460.70108	0	13.520172						85	5	3	NaN	NaN	NaN	0.20668	1	16255	16255		27.103	19.814	1	7971.1			23788	5340	13716	14114	18955	18955					-0.021375692299670845
SEAPSGESRKF	11	Unmodified	_SEAPSGESRKF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.7911091835	2	597.791109	1193.56767	1.0116	0.00060473	-1.7686	-0.0010573	-0.75702	-0.00045254	597.7897101518234	12.006	0.095923	11.998	11.95	12.046	-0.0081863	1206	43	0.894683	0.025747418	0.89316356	362.4923	0	10.431885						108	5	3	NaN	NaN	NaN	0.46001	1	15629	15629		19.904	10.985	1	8213.4			23789	5340	13716	14114	18956	18956					-0.021375692299670845
SEAPSGESRKF	11	Unmodified	_SEAPSGESRKF_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.8631649445333	3	398.863165	1193.56767	1.2331	0.00049186	-0.91269	-0.00036404	0.32046	0.00012782	398.86249473259994	12.03	0.14398	12.022	11.974	12.118	-0.0081863	1428	34	0.7580582	0.020389438	0.75653875	460.70108	0	12.3914795						91	7	2	NaN	NaN	NaN	0.29849	1	15630	15630		23.591	17.671	1	9702.3			23790	5340	13716	14114	18957	18957					-0.021375692299670845
SECLKYVQY	9	Unmodified	_SECLKYVQY_					0	0	0		nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.77079955285	2	566.7708	1131.52705	1.6425	0.0009309	7.0706	0.0040074	8.7131	0.0049383	567.2755151601147	29.57	0.12066	29.57	29.498	29.618	0	1224	67	0.883646	0.040477753	0.883646	358.24472	0	16.41034						187	6	3	NaN	NaN	NaN	0.31737	1	14138	14138		17.799	7.194	1	16285			23791	7994	13717	14115	18958	18958					-0.0334562687394282
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.77185379785	2	541.771854	1081.52915	1.0707	0.00058008	-4.5279	-0.0024531	-3.4572	-0.001873	541.7694537281411	12.868	0.096078	12.868	12.868	12.964	0	1281	43	0.84864825	0.025819898	0.84864825	344.2475	0	10.473633						68	5	2	NaN	NaN	NaN	0.1507	1	12048	12048		28.495	12.673	1	5534.2			23792	4607	13718	14116	18959	18959					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.77185379785	2	541.771854	1081.52915	0.90537	0.00049051	-0.76893	-0.00041659	0.13644	7.3919E-05	541.7707150594119	12.82	0.072065	12.82	12.772	12.844	0	1284	40	0.8468043	0.0239743	0.8468043	343.49948	0	9.725006						89	4	3	NaN	NaN	NaN	0.12104	1	12049	12049		32.778	12.265	1	7528.3			23793	4607	13718	14116	18960	18960					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.77185379785	2	541.771854	1081.52915	1.2131	0.00065721	-0.59164	-0.00032054	0.62143	0.00033667	541.7716413918913	12.822	0.048038	12.813	12.765	12.813	-0.00947	1281	34	0.84864825	0.020281553	0.8471288	344.2475	0	8.227051						63	3	2	NaN	NaN	NaN	0.29341	1	11731	11731		19.336	2.4781	1	8596.5			23794	4607	13718	14116	18961	18961					-0.0083487486449485
SEDGLLKLW	9	Unmodified	_SEDGLLKLW_					0	0	0		nc|ENSG00000122692|Q2TAY7-2|SMU1;ENSG00000122692|ENST00000397149|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7873068968	2	530.787307	1059.56006	1.6261	0.00086309	-2.0488	-0.0010875	-0.4227	-0.00022437	530.7859464341153	28.701	0.096535	28.701	28.677	28.774	0	1257	46	0.86339295	0.027632773	0.86339295	350.31985	0	11.211945						117	5	3	NaN	NaN	NaN	0.35794	1	11073	11073		15.463	2.4598	1	17390			23795	2337	13719	14117	18962	18962					0.03266323240427482
SEDGLLKLW	9	Unmodified						0	0	0		nc|ENSG00000122692|Q2TAY7-2|SMU1;ENSG00000122692|ENST00000397149|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	nc|ENSG00000122692|Q2TAY7-2|SMU1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.787307	1059.56006	0.68951	0.00036598	-1.6694	-0.0008861	-0.9799	-0.00052012	530.7865665802926	28.725	0.16891	28.716	28.668	28.837	-0.0083504	1254	58	0.8652351	0.035001516	0.86371565	351.06732		14.201813	0.0075184	0.00017931	0.00016137	NaN	15.463	153	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18436			23796	2337	13719	14117							0.03266323240427482
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2932877317	2	560.293288	1118.57202	1.8424	0.0010323	-1.5656	-0.00087719	0.27679	0.00015508	560.2922262073205	17.333	0.07189	17.333	17.309	17.381	0	1266	34	0.85786515	0.020270646	0.85786515	347.84128	0	8.219177						75	4	2	NaN	NaN	NaN	0.49999	1	13621	13621		9.6116	3.9175	1	8165.8			23797	2315	13720	14118	18963	18963					0.017479399836020093
SEDKSIRVW	9	Unmodified	_SEDKSIRVW_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2932877317	2	560.293288	1118.57202	1.7891	0.0010024	-0.77721	-0.00043547	1.0119	0.00056698	560.2933458464331	17.402	0.09598	17.388	17.34	17.436	-0.013569	1266	34	0.85786515	0.020270646	0.8563457	347.84128	0	8.219177						86	5	2	NaN	NaN	NaN	0.29341	1	13215	13215		19.336	4.4824	1	10409			23798	2315	13720	14118	18964	18964					0.017479399836020093
SEDNIMQVW	9	Unmodified	_SEDNIMQVW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.25023128625	2	561.250231	1120.48591	1.4846	0.00083322	-0.68986	-0.00038719	0.79472	0.00044604	561.2505700207121	28.967	0.1207	28.967	28.943	29.063	0	1281	55	0.84864825	0.033179045	0.84864825	344.09692	0	13.452942						121	6	2	NaN	NaN	NaN	0.6532	1	13690	13690		3.2116	0.42642	1	10792			23799	4142	13721	14119	18965	18965					-0.06951387913409235
SEDNIMQVW	9	Unmodified	_SEDNIMQVW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1121.4931861059	1	1121.49319	1120.48591	1.9607	0.0021989	-0.95436	-0.0010703	1.0064	0.0011286	1121.4921992007867	28.967	0.072426	28.967	28.943	29.015	0	129	40	1.5422925	0.0230062	1.5422925	312.676	0	4.664154						64	4	2	NaN	NaN	NaN	0.6532	1	13691	13691		3.2116	0.32214	1	5127			23800	4142	13721	14119	18966	18966					-0.06951387913409235
SEDNIMQVW	9	Unmodified	_SEDNIMQVW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.25023128625	2	561.250231	1120.48591	1.1756	0.00065982	-1.4772	-0.00082906	-0.30154	-0.00016924	561.2497917737227	28.966	0.09651	28.958	28.934	29.031	-0.0077229	1281	55	0.84864825	0.033179045	0.8471288	344.09692	0	13.452942						132	5	3	NaN	NaN	NaN	0.12866	1	13288	13288		31.675	19.937	1	11932			23801	4142	13721	14119	18967	18967					-0.06951387913409235
SEDNIMQVW	9	Oxidation (M)	_SEDNIM(Oxidation (M))QVW_		SEDNIM(1)QVW		SEDNIM(45)QVW	0	0	1		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2476885973	2	569.247689	1136.48082	1.475	0.00083965	0.75534	0.00042998	2.2304	0.0012696	569.2483720830289	24.188	0.048298	24.188	24.164	24.213	0	1281	55	0.84864825	0.03318268	0.84864825	344.03806	0	13.452087						116	3	3	NaN	NaN	NaN	0.055351	1	14319	14319		44.638	19.677	1	13259			23802	4142	13721	14120	18968	18968		447			-0.08195691776040803
SEDNIMQVW	9	Oxidation (M)	_SEDNIM(Oxidation (M))QVW_		SEDNIM(1)QVW		SEDNIM(45)QVW	0	0	1		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2476885973	2	569.247689	1136.48082	1.2365	0.00070387	-0.7997	-0.00045523	0.43678	0.00024864	569.2473166726736	24.188	0.072372	24.175	24.151	24.224	-0.012749	1278	46	0.85049206	0.027653694	0.8489726	344.78552	0	11.210663						125	4	3	NaN	NaN	NaN	0.055351	1	13849	13849		44.638	15.04	1	13028			23803	4142	13721	14120	18969	18969		447			-0.08195691776040803
SEDNRILLW	9	Unmodified	_SEDNRILLW_					0	0	0		nc|ENSG00000116455|Q9BQA1-2|WDR77;ENSG00000116455|ENST00000235090|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.3011127638001	2	573.301113	1144.58767	1.3266	0.00076057	-0.72619	-0.00041632	0.60046	0.00034425	573.3006267175231	26.964	0.14478	26.964	26.94	27.084	0	1278	34	0.85049206	0.020279348	0.85049206	344.75623	0	8.220459						128	7	3	NaN	NaN	NaN	0.097143	1	14612	14612		36.235	6.6365	1	20102			23804	2081	13722	14121	18970	18970					0.021162265006751113
SEDNRILLW	9	Unmodified	_SEDNRILLW_					0	0	0		nc|ENSG00000116455|Q9BQA1-2|WDR77;ENSG00000116455|ENST00000235090|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.3011127638001	2	573.301113	1144.58767	0.86183	0.00049409	-1.5331	-0.00087894	-0.67129	-0.00038485	573.2997824903488	26.987	0.1207	26.977	26.953	27.074	-0.010126	1275	37	0.85233563	0.022121787	0.8508162	345.50357	0	8.967285						145	6	3	NaN	NaN	NaN	0.04743	1	14134	14134		48.002	17.211	1	18789			23805	2081	13722	14121	18971	18971					0.021162265006751113
SEDQVQIHTY	10	Unmodified	_SEDQVQIHTY_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.2831169759	2	610.283117	1218.55168	1.2176	0.0007431	-0.88117	-0.00053776	0.33647	0.00020534	610.2827813008976	17.066	0.12006	17.053	17.005	17.125	-0.013294	1182	40	0.9093879	0.02388376	0.90786844	368.36383	0	9.674561						131	6	3	NaN	NaN	NaN	0.0049332	1	16261	16261		77.761	51.96	1	16531			23806	2332	13723	14122	18972	18972					-0.048852754668587295
SEDVARLACL	10	Unmodified	_SEDVARLACL_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.77387355805	2	538.773874	1075.53319	1.7296	0.00093188	-11.634	-0.0062683	-9.9047	-0.0053364	538.7678532243023	24.96	0.16894	24.96	24.864	25.033	0	1278	109	0.85049206	0.06638688	0.85049206	345.01965	0	26.931183						228	8	2	NaN	NaN	NaN	0.69717	1	11785	11785		8.2448	0.70444	1	27204	+		23807	10439	13724	14123	18973	18973					-0.0015510864241150557
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3247848253501	2	619.324785	1236.63502	1.3834	0.0008568	-1.6894	-0.0010463	-0.30599	-0.0001895	619.3239226891984	16.326	0.11993	16.326	16.302	16.422	0	1137	34	0.9369253	0.020176709	0.9369253	379.4562	0	8.1716						93	6	3	NaN	NaN	NaN	0.25358	1	17446	17446		30.925	19.186	1	7939.3			23808	3450	13725	14124	18974	18974					0.02616460981016644
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.2189487057667	3	413.218949	1236.63502	1.6258	0.00067182	-0.88119	-0.00036412	0.74464	0.0003077	413.2190178681535	16.326	0.12003	16.326	16.278	16.398	0	1434	46	0.75435036	0.027818918	0.75435036	458.2655	0	16.899902						90	6	3	NaN	NaN	NaN	0.44412	1	17447	17447		13.638	7.4971	1	6270.7			23809	3450	13725	14124	18975	18975					0.02616460981016644
SEEAEIIRKY	10	Unmodified	_SEEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3247848253501	2	619.324785	1236.63502	1.5109	0.00093573	-0.49289	-0.00030526	1.018	0.00063047	619.3245523567776	16.347	0.16783	16.334	16.31	16.478	-0.012995	1137	40	0.9369253	0.023847759	0.93540585	379.45618	0	9.658386						114	8	3	NaN	NaN	NaN	0.02603	1	16721	16721		61.199	31.163	1	9891.3			23810	3450	13725	14124	18976	18976					0.02616460981016644
SEEAEIIRKY	10	Unmodified						0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	413.218949	1236.63502	1.7994	0.00074353	-1.4802	-0.00061165	0.31915	0.00013188	413.21843567010876	16.347	0.11991	16.334	16.334	16.454	-0.012995	1437	52	0.7524962	0.031531572	0.75097674	457.1391		19.155304	0.0039741	-0.00040442	-0.0016868	NaN	13.638	98	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9019.7			23811	3450	13725	14124							0.02616460981016644
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.28459703235	2	540.284597	1078.55464	2.1767	0.0011761	1.68	0.0009077	3.8568	0.0020838	540.7878017060418	25.853	0.16891	25.853	25.805	25.974	0	1209	118	0.892844	0.07176763	0.892844	362.18768	0	29.112976						279	8	3	NaN	NaN	NaN	0.13999	1	11919	11919		30.035	12.255	1	51009			23812	406	13726	14125	18977	18977					0.018505996579506245
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.28459703235	2	540.284597	1078.55464	2.0406	0.0011025	2.0716	0.0011192	4.1122	0.0022217	540.2850878339815	25.853	0.096542	25.841	25.817	25.914	-0.0116	1209	115	0.892844	0.06991613	0.8913246	362.18768	0	28.361908						215	5	2	NaN	NaN	NaN	0.1507	1	11614	11614		28.495	6.7242	1	53555			23813	406	13726	14125	18978	18978					0.018505996579506245
SEEGLLRLY	9	Unmodified	_SEEGLLRLY_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2902137265	2	540.290214	1078.56587	1.2557	0.00067844	-0.079926	-4.3183E-05	1.1758	0.00063525	540.2906913463386	24.767	0.12064	24.755	24.707	24.827	-0.012392	1254	52	0.8652351	0.031306982	0.86371565	350.98795	0	12.69986						115	6	2	NaN	NaN	NaN	0.58159	1	11616	11616		6.2502	0.78436	1	11319			23814	866	13727	14126	18979	18979					0.029734217520854145
SEEITTGSAW	10	Unmodified	_SEEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4843955586	1	1080.4844	1079.47712	1.4689	0.0015871	0.45431	0.00049088	1.9232	0.002078	1080.483590564246	22.187	0.1206	22.187	22.139	22.26	0	162	55	1.5228153	0.03189361	1.5228153	308.87006	0	6.468933						103	6	2	NaN	NaN	NaN	0.026555	1	11938	11938		60.982	39.211	1	8938.3			23815	4168	13728	14127	18980	18980					-0.05944038278221342
SEEITTGSAW	10	Unmodified	_SEEITTGSAW_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.4843955586	1	1080.4844	1079.47712	1.6687	0.001803	-0.59281	-0.00064053	1.0758	0.0011624	1080.4838022797524	22.187	0.14477	22.173	22.149	22.294	-0.013731	156	55	1.5263584	0.03189361	1.5248389	309.58865	0	6.468933						115	7	2	NaN	NaN	NaN	0.00909	1	11636	11636		72.428	45.697	1	8980.5			23816	4168	13728	14127	18981	18981					-0.05944038278221342
SEEKRVKTW	9	Unmodified	_SEEKRVKTW_					0	0	0		ENST00000542077.5_1_1:212254051-212273606:+|nuORF	ENST00000542077.5_1_1:212254051-212273606:+|nuORF	ENST00000542077.5_1_1:212254051-212273606:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8143873145501	2	581.814387	1161.61422	1.4085	0.00081947	1.8761	0.0010915	3.2846	0.001911	581.8153294351827	27.59	0.21718	27.581	27.533	27.75	-0.009552	1203	106	0.8965218	0.06438601	0.89500237	363.35147	0	26.095001						528	10	4	NaN	NaN	NaN	0.21199	1	14694	14694		24.562	1.4444	1	110320			23817	7503	13729	14128	18982	18982					0.0398791539200829
SEELTAAERQI	11	Unmodified	_SEELTAAERQI_					0	0	0		ENSG00000203724|ENST00000367393|C1orf53	ENSG00000203724|ENST00000367393|C1orf53	ENSG00000203724|ENST00000367393|C1orf53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.21397477819994	3	416.213975	1245.62009	2.3851	0.0009927	2.4367	0.0010142	4.8218	0.0020069	416.21509441774765	21.392	0.04808	21.378	21.354	21.402	-0.014006	1455	28	0.7413668	0.016698599	0.73984736	450.3422	0	10.143524						33	3	2	NaN	NaN	NaN	0.73455	1	16912	16912		2.0359	0	1	2080.2			23818	5850	13730	14129	18983	18983					0.007109691129926432
SEEPAGKR	8	Unmodified	_SEEPAGKR_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4424711644001	1	873.442471	872.435195	1.414	0.001235	-0.52229	-0.00045619	0.8917	0.00077885	873.4425531578861	20.309	0.12019	20.309	20.237	20.357	0	396	127	1.3840506	0.07503784	1.3840506	281.56418	0	15.26532						187	6	3	NaN	NaN	NaN	0.54545	1	5696	5696		28.667	13.491	1	15159			23819	3363	13731	14130	18984	18984					-0.006125491760940349
SEEPAGKR	8	Unmodified	_SEEPAGKR_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.4424711644001	1	873.442471	872.435195	1.1111	0.00097045	-1.1377	-0.00099368	-0.026593	-2.3227E-05	873.4419951559956	20.333	0.21668	20.319	20.222	20.439	-0.014141	429	118	1.3643885	0.06967425	1.362869	277.56424	0	14.174194						240	10	2	NaN	NaN	NaN	0.65075	1	5559	5559		22.126	6.951	1	19051			23820	3363	13731	14130	18985	18985					-0.006125491760940349
SEEPILKWY	9	Unmodified	_SEEPILKWY_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.80041427205	2	582.800414	1163.58628	2.165	0.0012618	-3.1125	-0.001814	-0.94749	-0.0005522	582.7978528325289	25.708	0.14475	25.696	25.624	25.769	-0.0116	1209	82	0.892844	0.049642324	0.8913246	361.85373	0	20.119171						148	7	2	NaN	NaN	NaN	0.41766	1	14743	14743		13.003	3.2568	1	15577			23821	932	13732	14131	18986	18986					0.011025924118939656
SEEPILKWY	9	Unmodified						0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.800414	1163.58628	2.264	0.0013194	-6.2699	-0.0036541	-4.006	-0.0023347	582.7960547075236	25.684	0.072359	25.684	25.684	25.757	0	1206	58	0.894683	0.034929693	0.894683	362.59906		14.156403	-0.0061106	-0.0022066	0.0016792	NaN	13.003	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14839			23822	932	13732	14131							0.011025924118939656
SEESFKQYF	9	Unmodified	_SEESFKQYF_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.76402876575	2	582.764029	1163.5135	1.8694	0.0010894	0.17317	0.00010092	2.0425	0.0011903	582.764423256215	21.609	0.072252	21.609	21.561	21.633	0	1215	40	0.8891654	0.023912191	0.8891654	360.3631	0	9.691193						107	4	3	NaN	NaN	NaN	0.012861	1	15256	15256		84.233	63.784	1	18114			23823	4561	13733	14132	18987	18987					-0.0617116138153051
SEESFKQYF	9	Unmodified	_SEESFKQYF_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.76402876575	2	582.764029	1163.5135	1.6559	0.00096501	1.8234	0.0010626	3.4793	0.0020276	582.7660200060861	21.585	0.072226	21.571	21.547	21.619	-0.013895	1215	58	0.8891654	0.034948587	0.88764596	360.3631	0	14.1640625						124	4	3	NaN	NaN	NaN	0.064504	1	14731	14731		40.957	19.186	1	18421			23824	4561	13733	14132	18988	18988					-0.0617116138153051
SEFDVNQSEMN	11	Unmodified	_SEFDVNQSEMN_					0	0	0			REV__ENSG00000080572|ENST00000372453|DNAAF6	REV__ENSG00000080572|ENST00000372453|DNAAF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.84344165823336	3	433.843442	1298.5085	1.0653	0.00046215	-3.7203	-0.001614	-2.6551	-0.0011519	433.84221378875253	21.224	0.16861	21.224	21.175	21.344	0	1413	40	0.7673241	0.024086237	0.7673241	465.9021	0	14.624603						171	8	4	NaN	NaN	NaN	0.76654	1	18747	18747		0.88464	0.16852	1	21279	+		23825	8650	13734	14133	18989	18989					-0.1288183330643733
SEGELVVKF	9	Unmodified	_SEGELVVKF_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.27403234605003	2	504.274032	1006.53351	1.9653	0.00099103	-2.0132	-0.0010152	-0.047923	-2.4166E-05	504.2731111450142	23.007	0.14437	23.007	22.959	23.103	0	1308	40	0.83204526	0.023995101	0.83204526	337.82874	0	9.742523						108	7	2	NaN	NaN	NaN	0.11656	1	8846	8846		33.425	22.82	1	13320			23826	4643	13735	14134	18990	18990					0.03050634349096981
SEGELVVKF	9	Unmodified	_SEGELVVKF_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.27403234605003	2	504.274032	1006.53351	1.438	0.00072512	-1.6294	-0.00082168	-0.19149	-9.6561E-05	504.2730781016821	23.031	0.14448	23.017	22.993	23.138	-0.013294	1308	40	0.83204526	0.023992479	0.8305259	337.82874	0	9.741486						131	7	3	NaN	NaN	NaN	0.16939	1	8671	8671		27.296	16.691	1	13229			23827	4643	13735	14134	18991	18991					0.03050634349096981
SEGGPRGA	8	Unmodified	_SEGGPRGA_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3478424977001	1	730.347842	729.340566	1.5108	0.0011034	-5.15	-0.0037613	-3.6391	-0.0026578	730.3435767199726	24.019	0.19294	24.006	23.886	24.079	-0.012747	597	94	1.2639319	0.05582106	1.2624124	257.90945	0	11.390442						329	9	2	NaN	NaN	NaN	0.82797	1	3672	3672		5.4659	0	1	30152			23828	6024	13736	14135	18992	18992					-0.03493062927429946
SEGPPLRLW	9	Unmodified	_SEGPPLRLW_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7876412478	2	527.787641	1053.56073	2.0511	0.0010825	-2.3769	-0.0012545	-0.32582	-0.00017196	527.7869515545485	25.877	0.21717	25.877	25.805	26.022	0	1281	76	0.84864825	0.04611945	0.84864825	344.36243	0	18.714233						281	10	4	NaN	NaN	NaN	0.059222	1	10808	10808		42.995	9.5695	1	42558			23829	4342	13737	14136	18993	18993					0.03609162680118061
SEGPPLRLW	9	Unmodified	_SEGPPLRLW_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7876412478	2	527.787641	1053.56073	1.861	0.0009822	-2.6153	-0.0013803	-0.7543	-0.00039811	527.7862683629914	25.877	0.21722	25.865	25.817	26.034	-0.0116	1284	127	0.8468043	0.07740116	0.8452849	343.61417	0	31.407654						304	10	2	NaN	NaN	NaN	0.032689	1	10582	10582		55.592	26.696	1	51332			23830	4342	13737	14136	18994	18994					0.03609162680118061
SEGVLASFF	9	Unmodified	_SEGVLASFF_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4723743093001	1	956.472374	955.465098	1.6646	0.0015922	-1.9078	-0.0018248	-0.24319	-0.0002326	956.4702569874391	32.996	0.072407	32.993	32.945	33.018	-0.0024757	303	37	1.4393384	0.021366477	1.437819	292.41647	0	4.3408203						58	4	2	NaN	NaN	NaN	0.021105	1	7072	7072		70.6	45.639	1	4585.8			23831	2957	13738	14137	18995	18995					-0.01441610230756396
SEHLFDSFE	9	Unmodified	_SEHLFDSFE_					0	0	0		nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.8294612685	3	370.829461	1109.46655	2.1436	0.0007949	-9.3231	-0.0034573	-7.1795	-0.0026624	371.1602699256975	34.66	0.096386	34.66	34.66	34.756	-0.00064468	1515	34	0.7042165	0.020453751	0.70269704	428.34937	0	12.441284						52	5	2	NaN	NaN	NaN	0.62619	1	12872	12872		2.3381	0.23557	1	3263.8			23832	1201	13739	14138	18996	18996					-0.0838002093266823
SEIDQLFRIF	10	Unmodified	_SEIDQLFRIF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;chr10:60792053-60792123|520|17.05|0.49|5.11|+|1|CDK1,None|1;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000250506|ENST00000448471|CDK3;ENSG00000123374|ENST00000266970|CDK2;ENST00000556656.5_1_12:56361683-56365109:+|nuORF	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3376952353501	2	634.337695	1266.66084	1.2222	0.00077528	-3.4834	-0.0022097	-2.2612	-0.0014344	634.3354606698687	34.155	0.12058	34.155	34.131	34.252	0	1134	67	0.9387595	0.040359855	0.9387595	380.09955	0	16.341553						187	6	3	NaN	NaN	NaN	0.1159	1	18160	18160		43.776	29.734	1	19971			23833	4721;2373	13740	14139	18997	18997					0.03817355223281993
SEIDQLFRIF	10	Unmodified	_SEIDQLFRIF_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;chr10:60792053-60792123|520|17.05|0.49|5.11|+|1|CDK1,None|1;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000250506|ENST00000448471|CDK3;ENSG00000123374|ENST00000266970|CDK2;ENST00000556656.5_1_12:56361683-56365109:+|nuORF	ENSG00000170312|ENST00000395284|CDK1;ENSG00000123374|ENST00000266970|CDK2	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3376952353501	2	634.337695	1266.66084	1.1889	0.00075418	-2.5521	-0.0016189	-1.3632	-0.00086471	634.3352250075976	34.178	0.1207	34.177	34.153	34.274	-0.0012474	1128	70	0.9424274	0.04219669	0.94090796	381.58466	0	17.085266						204	6	3	NaN	NaN	NaN	0.12314	1	17350	17350		42.779	24.98	1	21728			23834	4721;2373	13740	14139	18998	18998					0.03817355223281993
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7956632451501	2	547.795663	1093.57677	1.2201	0.00066835	-1.2508	-0.00068519	-0.030732	-1.6835E-05	547.7950942340772	14.837	0.16817	14.837	14.813	14.981	0	1197	58	0.9001988	0.034918368	0.9001988	365.10797	0	14.162415						184	8	3	NaN	NaN	NaN	0.21199	1	12565	12565		24.562	14.202	1	26376			23835	3067	13741	14140	18999	18999					0.03372824126381602
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7956632451501	2	547.795663	1093.57677	1.0713	0.00058685	-1.6606	-0.00090967	-0.5893	-0.00032282	547.795078606672	14.884	0.14411	14.872	14.824	14.968	-0.011737	1197	37	0.9001988	0.022059679	0.8986794	365.10797	0	8.9470825						165	7	3	NaN	NaN	NaN	0.084037	1	12240	12240		38.131	7.5207	1	23328			23836	3067	13741	14140	19000	19000					0.03372824126381602
SEIEAKVRY	9	Unmodified	_SEIEAKVRY_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.5328676523	3	365.532868	1093.57677	1.7374	0.00063507	-1.058	-0.00038675	0.67935	0.00024832	365.532537124705	14.86	0.096098	14.848	14.824	14.92	-0.011738	1452	28	0.74322224	0.016698599	0.7417028	452.15552	0	10.158936						53	5	2	NaN	NaN	NaN	0.23112	1	12241	12241		15.822	4.0831	1	5009.8			23837	3067	13741	14140	19001	19001					0.03372824126381602
SEIEAKVRY	9	Unmodified						0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	365.532868	1093.57677	1.5633	0.00057143	-2.5961	-0.00094898	-1.0329	-0.00037754	365.5320879121227	14.837	0.072078	14.837	14.813	14.885	0	1455	28	0.7413668	0.016698599	0.7413668	451.02676		10.158966	-0.0053964	-0.00077329	-0.00016798	NaN	15.822	44	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3205.4			23838	3067	13741	14140							0.03372824126381602
SEIFPVSFH	9	Unmodified	_SEIFPVSFH_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7663744894501	2	531.766374	1061.5182	0.66183	0.00035194	-8.0031	-0.0042558	-7.3412	-0.0039038	531.7613673171709	32.851	0.096542	32.848	32.751	32.848	-0.0031052	1233	52	0.87812483	0.031300247	0.8766054	356.2889	0	12.699707						92	5	2	NaN	NaN	NaN	0.47587	1	10923	10923		10.605	0.24481	1	9799.9			23839	5312	13742	14141	19002	19002					-0.010102324480840252
SEISSPIDI	9	Unmodified	_SEISSPIDI_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.G1793D|1|0.18|ENSG00000138182|chr10:89772824-89772824|G/A|missense_variant;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.488418304	1	960.488418	959.481142	2.2008	0.0021138	-0.67306	-0.00064646	1.5277	0.0014673	960.4882697519445	25.274	0.31362	25.262	25.189	25.503	-0.012011	270	121	1.458913	0.07119894	1.4573935	296.37558	0	14.463959						660	14	3	NaN	NaN	NaN	0.10956	1	7174	7174		34.439	1.986	1	206480			23840	3147	13743	14142	19003	19003					-0.00021948784524283838
SEKAGIIQDTW	11	Unmodified	_SEKAGIIQDTW_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.31695979325	2	624.31696	1246.61937	1.6115	0.0010061	-1.1492	-0.00071747	0.46232	0.00028864	624.3168008472518	21.657	0.12046	21.657	21.633	21.754	0	1128	79	0.9424274	0.047708333	0.9424274	381.65082	0	19.320282						215	6	5	NaN	NaN	NaN	0.12748	1	17687	17687		46.512	29.654	1	23823			23841	2477	13744	14143	19004	19004					0.005921744639408644
SEKAGIIQDTW	11	Unmodified						0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.31696	1246.61937	1.157	0.00072235	2.1286	0.0013289	3.2856	0.0020513	624.3198573492633	21.392	0.12019	21.378	21.282	21.402	-0.014006	1158	49	0.92408	0.029365301	0.9225606	374.22073		11.891937	-0.1395	0.0027421	-0.0099334	NaN	46.512	88	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7774.8			23842	2477	13744	14143							0.005921744639408644
SEKKDQALNK	10	Unmodified	_SEKKDQALNK_					0	0	0			REV__ENSG00000283199|ENST00000636427|C13orf46	REV__ENSG00000283199|ENST00000636427|C13orf46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.81712696875	2	580.817127	1159.6197	1.864	0.0010827	-9.6122	-0.0055829	-7.7481	-0.0045003	580.8118418294133	15.87	0.16785	15.87	15.846	16.014	0	1200	40	0.89836043	0.023904443	0.89836043	364.10403	0	9.688416						132	8	3	NaN	NaN	NaN	0.66626	1	15134	15134		10.36	0.74852	1	12833	+		23843	11438	13745	14144	19005	19005					0.046275941838075596
SEKKDQALNK	10	Unmodified						0	0	0			REV__ENSG00000283199|ENST00000636427|C13orf46	REV__ENSG00000283199|ENST00000636427|C13orf46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.817127	1159.6197	1.864	0.0010827	-9.6122	-0.0055829	-7.7481	-0.0045003	580.8118418294133	15.87	0.16785	15.87	15.846	16.014	0	1200	40	0.89836043	0.023904443	0.89836043	364.10403		9.688416	-0.0044278	0.00059718	0.001679	NaN	10.36	132	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12833	+		23844	11438	13745	14144							0.046275941838075596
SEKKDQALNK	10	Unmodified						0	0	0			REV__ENSG00000283199|ENST00000636427|C13orf46	REV__ENSG00000283199|ENST00000636427|C13orf46	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	580.817127	1159.6197	2.2614	0.0013134	-10.731	-0.0062329	-8.47	-0.0049195	580.8118045378071	15.891	0.14365	15.879	15.855	15.999	-0.012611	1203	37	0.8965218	0.022064447	0.89500237	363.35886		8.942688	0.0044278	-0.00070287	-0.001679	NaN	10.36	121	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10090	+		23845	11438	13745	14144							0.046275941838075596
SEKVLPRGLFQ	11	Unmodified	_SEKVLPRGLFQ_					0	0	0			REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	REV__ENST00000495008.5_1_3:108373019-108406879:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3667870258001	2	637.366787	1272.71902	2.0813	0.0013266	-10.291	-0.0065593	-8.21	-0.0052328	637.3602354242533	17.549	0.047895	17.549	17.525	17.573	0	1092	31	0.9644182	0.018313825	0.9644182	390.46863	0	7.414795						47	3	2	NaN	NaN	NaN	0.71564	1	18279	18279		6.4299	0.51015	1	5200	+		23846	11207	13746	14145	19006	19006					0.09357036868573232
SELANELYGYI	11	Unmodified	_SELANELYGYI_					0	0	0		tr|U7T3H6|U7T3H6_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00281PE=3SV=1	tr|U7T3H6|U7T3H6_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00281PE=3SV=1	tr|U7T3H6|U7T3H6_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00281PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.5433208882667	3	424.543321	1270.60813	1.7327	0.00073562	-8.5681	-0.0036375	-6.8354	-0.0029019	424.53926119269414	15.915	0.11966	15.903	15.855	15.975	-0.012611	1464	61	0.73579943	0.037114084	0.73428	446.8641	0	22.54004						196	6	3	NaN	NaN	NaN	0.6085	1	17428	17428		6.8076	0	1	24430			23847	13972	13747	14146	19007	19007					-0.016346476301805524
SELFMSSFQSY	11	Unmodified	_SELFMSSFQSY_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.2895534120001	2	663.289553	1324.56455	1.4123	0.00093674	-2.3287	-0.0015446	-0.91643	-0.00060786	663.2884222375544	29.522	0.12073	29.522	29.474	29.594	0	1116	46	0.94976085	0.027495861	0.94976085	384.3726	0	11.127686						160	6	3	NaN	NaN	NaN	0.073891	1	19166	19166		43.776	32.605	1	21104			23848	378	13748	14147	19008	19008					-0.08474580398956277
SELIAKIPNFW	11	Unmodified	_SELIAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3637130206	2	659.363713	1316.71287	1.4173	0.0009345	-2.1131	-0.0013933	-0.69581	-0.00045879	659.3627002829973	30.342	0.1448	30.342	30.294	30.439	0	1101	55	0.95892316	0.032982588	0.95892316	388.1045	0	13.34903						223	7	3	NaN	NaN	NaN	0.055118	1	19069	19069		61.575	39.724	1	31334			23849	2212	13749	14148	19009	19009					0.06718518637035231
SELIAKIPNFW	11	Unmodified	_SELIAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3637130206	2	659.363713	1316.71287	1.0429	0.00068766	-3.3334	-0.0021979	-2.2905	-0.0015103	659.361537056724	30.366	0.21716	30.359	30.238	30.456	-0.0064106	1098	58	0.960755	0.03480935	0.9592356	388.84592	0	14.088379						258	10	4	NaN	NaN	NaN	0.0082092	1	18220	18220		97.846	44.705	1	32961			23850	2212	13749	14148	19010	19010					0.06718518637035231
SELINSVL	8	Unmodified	_SELINSVL_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.74765042005	2	437.74765	873.480748	1.3704	0.00059989	0.51246	0.00022433	1.8829	0.00082422	437.7485486020441	16.973	0.11999	16.973	16.949	17.069	0	1383	49	0.7858409	0.02961409	0.7858409	319.7233	0	12.048645						95	6	2	NaN	NaN	NaN	0.7612	1	5722	5722		14.425	0.38343	1	8040.7	+		23851	9353	13750	14149	19011	19011					0.03894676286279264
SELINSVL	8	Unmodified						0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	437.74765	873.480748	1.3704	0.00059989	0.51246	0.00022433	1.8829	0.00082422	437.7485486020441	16.973	0.11999	16.973	16.949	17.069	0	1383	49	0.7858409	0.02961409	0.7858409	319.7233		12.048645	-0.0036626	0.0019094	0.00075972	NaN	14.425	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8040.7	+		23852	9353	13750	14149							0.03894676286279264
SELINSVL	8	Unmodified						0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	437.74765	873.480748	1.5902	0.00069611	-3.753	-0.0016429	-2.1628	-0.00094678	437.745856227204	16.994	0.11992	16.981	16.957	17.077	-0.013294	1383	55	0.7858409	0.03331226	0.7843215	319.7233		13.553223	0.0036626	-0.0018251	-0.00075972	NaN	14.425	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7124.2	+		23853	9353	13750	14149							0.03894676286279264
SELMKLNK	8	Unmodified	_SELMKLNK_					0	0	0			REV__ENST00000266079.4_1_20:62641597-62641636:+|nuORF	REV__ENST00000266079.4_1_20:62641597-62641636:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.77060258759997	2	481.770603	961.526652	1.9498	0.00093936	-11.18	-0.0053864	-9.2306	-0.004447	481.7665173601046	22.718	0.048239	22.718	22.694	22.742	0	1338	52	0.81357855	0.031412125	0.81357855	330.5393	0	12.762085						77	3	2	NaN	NaN	NaN	0.75561	1	7376	7376		15.175	1.1338	1	4807.5	+		23854	11576	13751	14150	19012	19012					0.04434998196870765
SELYQKTYW	9	Unmodified	_SELYQKTYW_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.2954960696501	2	609.295496	1216.57644	0.96649	0.00058888	-3.7659	-0.0022945	-2.7994	-0.0017057	609.7938917186392	21.103	0.14454	21.103	21.079	21.224	0	1170	58	0.91673553	0.034892023	0.91673553	371.3469	0	14.133881						201	7	3	NaN	NaN	NaN	0.03533	1	16899	16899		53.14	31.014	1	22912			23855	3727	13752	14151	19013	19013					-0.023185955934650337
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2393322489501	2	522.239332	1042.46411	1.6295	0.00085097	0.64233	0.00033545	2.2718	0.0011864	522.2402370409383	19.54	0.14401	19.54	19.492	19.636	0	1311	49	0.83019954	0.029530823	0.83019954	336.92258	0	11.984589						158	7	3	NaN	NaN	NaN	0.064504	1	10305	10305		40.957	13.168	1	22989			23856	3159	13753	14152	19014	19014					-0.055421926619601436
SEMDTSVKF	9	Unmodified	_SEMDTSVKF_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.2393322489501	2	522.239332	1042.46411	1.4805	0.00077315	-0.83307	-0.00043506	0.64739	0.00033809	522.239226418303	19.539	0.12037	19.524	19.5	19.621	-0.014143	1314	40	0.8283535	0.023997664	0.8268341	336.17343	0	9.739075						156	6	3	NaN	NaN	NaN	0.16939	1	10098	10098		27.296	14.708	1	21670			23857	3159	13753	14152	19015	19015					-0.055421926619601436
SENDVIRLI	9	Unmodified	_SENDVIRLI_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7956632451501	2	529.795663	1057.57677	1.7231	0.00091288	-2.3843	-0.0012632	-0.6612	-0.0003503	529.7938614452793	25.105	0.14476	25.105	25.081	25.226	0	1272	43	0.854179	0.02580595	0.854179	346.5897	0	10.470947						105	7	2	NaN	NaN	NaN	0.40649	1	11000	11000		13.463	8.2742	1	18645			23858	921	13754	14153	19016	19016					0.05028824126384279
SENDVIRLI	9	Unmodified						0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.795663	1057.57677	1.2162	0.00064436	-0.86256	-0.00045698	0.35368	0.00018738	529.7949034265021	25.105	0.14474	25.093	25.069	25.214	-0.012011	1272	40	0.854179	0.023961365	0.8526596	346.58966		9.722504	-0.0061222	0.00094298	-0.00075972	NaN	13.463	121	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14668			23859	921	13754	14153							0.05028824126384279
SENELKKAY	9	Unmodified	_SENELKKAY_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.27984600545	2	541.279846	1080.54514	1.1656	0.00063089	-1.7531	-0.00094892	-0.58755	-0.00031803	541.2793003695173	12.39	0.21605	12.381	12.333	12.549	-0.0088415	1269	34	0.8560222	0.020272791	0.85450274	347.24265	0	8.223572						139	10	2	NaN	NaN	NaN	0.06142	1	11691	11691		40.006	22.807	1	11820			23860	743	13755	14154	19017	19017					0.008088313724329055
SENIEFAELC	10	Unmodified	_SENIEFAELC_					0	0	0		MCCC1|p.M136I|1|0.41|ENSG00000078070|chr3:183072449-183072449|C/T|missense_variant	MCCC1|p.M136I|1|0.41|ENSG00000078070|chr3:183072449-183072449|C/T|missense_variant	MCCC1|p.M136I|1|0.41|ENSG00000078070|chr3:183072449-183072449|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.5059897914667	3	385.50599	1153.49614	1.2759	0.00049188	4.9789	0.0019194	6.2548	0.0024113	385.50776571349644	32.489	0.096535	32.486	32.462	32.558	-0.0031013	1497	31	0.71537006	0.018583238	0.7138506	434.93008	0	11.298218						61	5	2	NaN	NaN	NaN	0.70677	1	14414	14414		3.9087	0	1	5639.4			23861	7875	13756	14155	19018	19018					-0.07446824978819677
SENLLGKQF	9	Unmodified	_SENLLGKQF_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.27710635125	2	518.277106	1034.53966	1.2012	0.00062258	-0.39618	-0.00020533	0.80506	0.00041725	518.276969092782	20.718	0.072304	20.704	20.704	20.776	-0.014086	1245	43	0.87076044	0.025780857	0.869241	353.41882	0	10.463776						71	4	2	NaN	NaN	NaN	0.51576	1	9767	9767		8.962	2.7118	1	6905.4			23862	3648	13757	14156	19019	19019					0.023771525806068894
SEPDFVAKF	9	Unmodified	_SEPDFVAKF_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.25838228185	2	520.258382	1038.50221	2.0335	0.0010579	-0.81667	-0.00042488	1.2168	0.00063306	520.257568931664	23.007	0.21674	23.007	22.935	23.152	0	1299	52	0.8375814	0.03136462	0.8375814	339.9353	0	12.729431						266	10	3	NaN	NaN	NaN	0.38313	1	10129	10129		14.425	2.8766	1	35556			23863	5175	13758	14157	19020	19020					-0.015499386850024166
SEPDFVAKF	9	Unmodified						0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.258382	1038.50221	1.5528	0.00080788	-1.4767	-0.00076825	0.076185	3.9636E-05	520.257509696398	23.055	0.26511	23.041	22.921	23.186	-0.013294	1296	64	0.8394264	0.038740337	0.83790696	340.68408		15.7229	0.017105	-0.00026169	0.00016277	NaN	14.425	221	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36794			23864	5175	13758	14157							-0.015499386850024166
SEPEDKLKW	9	Unmodified	_SEPEDKLKW_					0	0	0			REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.28767103755	2	566.287671	1130.56079	1.5913	0.00090116	6.6454	0.0037632	8.2368	0.0046644	566.2916590241357	14.813	0.14405	14.813	14.717	14.861	0	1236	46	0.876284	0.027617872	0.876284	355.26373	0	11.196869						155	7	3	NaN	NaN	NaN	0.12866	1	14101	14101		31.675	4.3792	1	16281	+		23865	13593	13759	14158	19021	19021					0.0007311788947390596
SEPEDKLKW	9	Unmodified						0	0	0			REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	REV__tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.287671	1130.56079	1.5913	0.00090116	6.6454	0.0037632	8.2368	0.0046644	566.2916590241357	14.813	0.14405	14.813	14.717	14.861	0	1236	46	0.876284	0.027617872	0.876284	355.26373		11.196869	-0.0053888	-0.00062924	0.00075972	NaN	31.675	155	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16281	+		23866	13593	13759	14158							0.0007311788947390596
SEPESIRKW	9	Unmodified	_SEPESIRKW_					0	0	0		ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496-3|CLTA;nc|ENSG00000122705|P09496|CLTA	ENSG00000122705|ENST00000345519|CLTA	ENSG00000122705|ENST00000345519|CLTA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2932877317	2	566.293288	1130.57202	0.99915	0.00056581	-2.3573	-0.0013349	-1.3581	-0.0007691	566.2917864822504	14.836	0.19217	14.824	14.752	14.944	-0.011737	1236	43	0.876284	0.025775313	0.8747646	355.26373	0	10.449799						178	9	3	NaN	NaN	NaN	0.1507	1	13650	13650		28.495	9.1589	1	17245			23867	2338	13760	14159	19022	19022					0.011959399836086959
SEPGLAPSL	9	Unmodified	_SEPGLAPSL_					0	0	0			REV__nc|ENSG00000047579|Q96EV8-3|DTNBP1	REV__nc|ENSG00000047579|Q96EV8-3|DTNBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	870.4567242451	1	870.456724	869.449448	0.9454	0.00082293	0.35291	0.00030719	1.2983	0.0011301	870.4574974229213	22.139	0.14472	22.125	22.077	22.222	-0.013731	423	55	1.3679651	0.03218651	1.3664457	278.30667	0	6.5481873						136	7	2	NaN	NaN	NaN	0.16171	1	5516	5516		27.789	1.6739	1	16279	+		23868	8475	13761	14160	19023	19023					0.009501032521825437
SEPPLPLLLT	10	Unmodified	_SEPPLPLLLT_					0	0	0			REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.3209825386501	2	540.320983	1078.62741	0.99791	0.00053919	-9.639	-0.0052082	-8.6411	-0.004669	540.3162716947639	29.618	0.16891	29.61	29.562	29.731	-0.0070648	1212	61	0.8910048	0.0367741	0.88948536	361.44135	0	14.917603						208	8	3	NaN	NaN	NaN	0.72631	1	11626	11626		6.2502	0.15988	1	25925	+		23869	11478	13762	14161	19024	19024					0.09124353451397837
SEPPLPLLLT	10	Unmodified						0	0	0			REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.320983	1078.62741	1.5473	0.00083603	-8.7972	-0.0047533	-7.2499	-0.0039173	540.3170353288825	29.57	0.12067	29.57	29.546	29.667	0	1215	67	0.8891654	0.040455878	0.8891654	360.6952		16.411163	-0.020183	0.00042958	-0.00015998	NaN	6.2502	208	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27006	+		23870	11478	13762	14161							0.09124353451397837
SEPPLPLLLT	10	Unmodified						0	0	0			REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.320983	1078.62741	0.99791	0.00053919	-9.639	-0.0052082	-8.6411	-0.004669	540.3162716947639	29.618	0.16891	29.61	29.562	29.731	-0.0070648	1212	61	0.8910048	0.0367741	0.88948536	361.44135		14.917603	0.020183	-0.00048013	0.00015998	NaN	6.2502	208	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25925	+		23871	11478	13762	14161							0.09124353451397837
SEPSPGGI	8	Unmodified	_SEPSPGGI_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3570102005002	1	743.35701	742.349734	1.6361	0.0012162	1.7835	0.0013257	3.4196	0.002542	743.358562891265	24.767	0.096508	24.755	24.707	24.803	-0.012392	600	76	1.2621325	0.04497361	1.2606131	257.459	0	9.174057						103	5	2	NaN	NaN	NaN	0.84727	1	3868	3868		1.2418	0	1	7565.1			23872	5825	13763	14162	19025	19025					-0.03174714361739461
SEPYMFHHTT	10	Unmodified	_SEPYMFHHTT_					0	0	0			REV__ENSG00000157350|ENST00000342907|ST3GAL2	REV__ENSG00000157350|ENST00000342907|ST3GAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.1817290593	3	417.181729	1248.52336	1.7252	0.00071971	-1.8438	-0.00076922	-0.11867	-4.9507E-05	417.1809899236881	28.677	0.072435	28.677	28.677	28.75	0	1458	37	0.7395112	0.022270858	0.7395112	449.20358	0	13.528046						39	4	2	NaN	NaN	NaN	0.77884	1	17734	17734		0.24776	0	1	2747.3	+		23873	10146	13764	14163	19026	19026					-0.09096296647794588
SEQAEREPL	9	Unmodified	_SEQAEREPL_					0	0	0			REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7592777388501	2	529.759278	1057.504	2.2454	0.0011895	3.5136	0.0018614	5.759	0.0030509	529.7613866086929	26.07	0.1931	26.07	25.974	26.167	0	1197	124	0.9001988	0.07547253	0.9001988	365.26285	0	30.623566						395	9	4	NaN	NaN	NaN	0.31737	1	10980	10980		17.799	4.3359	1	71111	+		23874	10870	13765	14164	19027	19027					-0.022449296670401964
SEQAEREPL	9	Unmodified						0	0	0			REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.759278	1057.504	2.2454	0.0011895	3.5136	0.0018614	5.759	0.0030509	529.7613866086929	26.07	0.1931	26.07	25.974	26.167	0	1197	124	0.9001988	0.07547253	0.9001988	365.26285		30.623566	0.005674	-0.00048532	0.00075972	NaN	17.799	395	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71111	+		23875	10870	13765	14164							-0.022449296670401964
SEQGGAEEG	9	Unmodified	_SEQGGAEEG_					0	0	0		ENST00000468232.1_1_3:170136267-170136351:+|nuORF	ENST00000468232.1_1_3:170136267-170136351:+|nuORF	ENST00000468232.1_1_3:170136267-170136351:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.3377313214	1	863.337731	862.330455	1.3723	0.0011848	7.2648	0.0062719	8.6371	0.0074567	863.3436615780698	33.335	0.048271	33.335	33.311	33.359	0	432	34	1.3625998	0.019674659	1.3625998	277.25073	0	4.0032654						42	3	2	NaN	NaN	NaN	0.64666	1	5555	5555		3.5698	0.78459	1	2446.2			23876	7129	13766	14165	19028	19028					-0.10621715443323865
SEQRDYIDTTW	11	Unmodified	_SEQRDYIDTTW_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.31768807475	2	707.317688	1412.62082	1.3374	0.00094593	-1.3702	-0.00096916	-0.032838	-2.3227E-05	707.3168492769008	21.994	0.096317	21.994	21.946	22.043	0	1083	64	0.9699114	0.038448572	0.9699114	392.27487	0	15.550293						87	5	2	NaN	NaN	NaN	0.73057	1	20163	20163		5.4499	0.26105	1	7854.2			23877	3622	13767	14166	19029	19029					-0.06898236237952915
SEQRDYIDTTW	11	Unmodified	_SEQRDYIDTTW_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.31768807475	2	707.317688	1412.62082	1.1673	0.00082567	-2.9724	-0.0021024	-1.8051	-0.0012768	707.8178175819509	21.994	0.072174	21.98	21.956	22.028	-0.013897	1083	43	0.9699114	0.02562821	0.96839195	392.27487	0	10.365173						104	4	3	NaN	NaN	NaN	0.61402	1	19210	19210		13.101	7.1814	1	7163.1			23878	3622	13767	14166	19030	19030					-0.06898236237952915
SERFNPGELRM	11	Unmodified	_SERFNPGELRM_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	445.88731609006663	3	445.887316	1334.64012	1.1068	0.0004935	-3.4297	-0.0015292	-2.3229	-0.0010357	446.22035181189096	24.14	0.048302	24.14	24.116	24.164	0	1365	40	0.7969414	0.024047077	0.7969414	483.7473	0	14.59671						39	3	2	NaN	NaN	NaN	0.77613	1	19325	19325		0.25824	0.044505	1	2849.9			23879	1926	13768	14167	19031	19031					-0.013815584280564508
SERFNPGELRM	11	Unmodified						0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	445.887316	1334.64012	1.9513	0.00087004	-3.2047	-0.0014289	-1.2535	-0.00055891	445.88569759630184	24.164	0.04821	24.151	24.127	24.175	-0.012749	1365	28	0.7969414	0.01664257	0.79542196	483.7473		10.102142	0.0055736	0.00014975	-0.00075972	NaN	0.25824	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2957.1			23880	1926	13768	14167							-0.013815584280564508
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.73949942445	2	490.739499	979.464446	2.2355	0.0010971	-2.0618	-0.0010118	0.17371	8.5249E-05	490.73848911897613	13.973	0.36015	13.973	13.853	14.213	0	1347	49	0.8080346	0.02956599	0.8080346	328.20212	0	12.008911						445	16	4	NaN	NaN	NaN	0.032409	1	7857	7857		55.958	29.843	1	87077			23881	5601;5147;5777	13769	14168	19032	19032					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.73949942445	2	490.739499	979.464446	1.1515	0.00056509	-1.5625	-0.00076679	-0.41101	-0.0002017	490.73860131798494	13.973	0.43142	13.962	13.818	14.25	-0.010672	1344	46	0.8098828	0.027719617	0.8083634	328.9528	0	11.258972						395	19	2	NaN	NaN	NaN	0.034172	1	7694	7694		53.652	28.691	1	91681			23882	5601;5147;5777	13769	14168	19033	19033					-0.026107729421141812
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(45)L	0	0	1		ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.73695673550003	2	498.736957	995.459361	1.007	0.00050222	-1.818	-0.00090672	-0.81105	-0.0004045	498.735976283769	11.862	0.26391	11.854	11.854	12.118	-0.0081863	1347	49	0.8080346	0.02956599	0.8065152	328.1291	0	12.006256						213	12	2	NaN	NaN	NaN	0.054111	1	8228	8228		45.165	23.394	1	45749			23883	5601;5147;5777	13769	14169	19034	19034		538			-0.03855076804734381
SESAQSKML	9	Oxidation (M)	_SESAQSKM(Oxidation (M))L_		SESAQSKM(1)L		SESAQSKM(47)L	0	0	1		ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;nc|ENSG00000179344|P01920|HLA-DQB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.73695673550003	2	498.736957	995.459361	1.0309	0.00051414	-1.6639	-0.00082986	-0.63303	-0.00031572	498.7358081967433	11.718	0.12005	11.71	11.59	11.71	-0.0081854	1347	37	0.8080346	0.022179246	0.8065152	328.1291	0	9.006653						161	6	4	NaN	NaN	NaN	0.050761	1	8229	8229		46.588	15.978	1	20896			23884	5601;5147;5777	13769	14169	19035	19035		538			-0.03855076804734381
SESDPISTV	9	Unmodified	_SESDPISTV_					0	0	0			REV__ENSG00000100330|ENST00000401950|MTMR3	REV__ENSG00000100330|ENST00000401950|MTMR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.72182960005	2	467.72183	933.429106	1.168	0.00054628	-0.79469	-0.00037169	0.37327	0.00017458	467.7213231081581	20.117	0.16819	20.117	20.069	20.237	0	1365	40	0.7969414	0.024044454	0.7969414	323.9173	0	9.772919						154	8	3	NaN	NaN	NaN	0.20577	1	6678	6678		24.961	0	1	16320	+		23885	8808	13770	14170	19036	19036					-0.040271121982755176
SESDPISTV	9	Unmodified						0	0	0			REV__ENSG00000100330|ENST00000401950|MTMR3	REV__ENSG00000100330|ENST00000401950|MTMR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	467.72183	933.429106	1.168	0.00054628	-0.79469	-0.00037169	0.37327	0.00017458	467.7213231081581	20.117	0.16819	20.117	20.069	20.237	0	1365	40	0.7969414	0.024044454	0.7969414	323.9173		9.772919	0.0073006	-0.0004793	0.0016845	NaN	24.961	154	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16320	+		23886	8808	13770	14170							-0.040271121982755176
SESDVTVVL	9	Unmodified	_SESDVTVVL_					0	0	0			REV__ENSG00000178607|ENST00000433197|ERN1	REV__ENSG00000178607|ENST00000433197|ERN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4884183040002	1	948.488418	947.481142	1.7709	0.0016796	-0.71824	-0.00068124	1.0526	0.0009984	948.4874121128961	21.633	0.14459	21.633	21.585	21.73	0	318	64	1.4304334	0.037417173	1.4304334	290.6421	0	7.6026						229	7	4	NaN	NaN	NaN	0.056143	1	7016	7016		44.302	2.5178	1	31025	+		23887	10792	13771	14171	19037	19037					0.005300512155031356
SESLFVSNHAY	11	Unmodified	_SESLFVSNHAY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.2934846969501	2	627.293485	1252.57242	1.564	0.0009811	-1.3227	-0.00082974	0.24128	0.00015135	627.2927067104521	20.477	0.28877	20.477	20.429	20.718	0	1119	76	0.9479278	0.04585606	0.9479278	383.85828	0	18.569183						411	13	5	NaN	NaN	NaN	1.6837E-15	1	17840	17840		119.15	73.986	1	116610			23888	3699	13772	14172	19038	19038					-0.04376685087163423
SESLFVSNHAY	11	Unmodified	_SESLFVSNHAY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2934846969501	2	627.293485	1252.57242	1.1999	0.00075267	-2.0917	-0.0013121	-0.89181	-0.00055942	627.2923663818125	20.501	0.24082	20.487	20.439	20.68	-0.014143	1122	88	0.9460945	0.053198814	0.9445751	383.11594	0	21.542572						488	11	4	NaN	NaN	NaN	2.0057E-15	1	17075	17075		117.26	31.918	1	118860			23889	3699	13772	14172	19039	19039					-0.04376685087163423
SESLLRGIYAY	11	Unmodified	_SESLLRGIYAY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.3351525464002	2	636.335153	1270.65575	1.8768	0.0011943	-3.7106	-0.0023612	-1.8338	-0.0011669	636.3320591736546	25.274	0.12063	25.274	25.25	25.371	0	1104	49	0.9570911	0.029317856	0.9570911	387.5088	0	11.870239						97	6	2	NaN	NaN	NaN	0.55071	1	18249	18249		16.659	8.9764	1	16319			23890	4112	13773	14173	19040	19040					0.03125051360689213
SESLLRGIYAY	11	Unmodified	_SESLLRGIYAY_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.3351525464002	2	636.335153	1270.65575	1.9713	0.0012544	-4.2083	-0.0026779	-2.237	-0.0014235	636.3327349038653	25.298	0.1206	25.286	25.262	25.382	-0.012011	1104	52	0.9570911	0.031155229	0.95557165	387.5088	0	12.614197						111	6	3	NaN	NaN	NaN	0.72681	1	17434	17434		5.6972	0.78746	1	16931			23891	4112	13773	14173	19041	19041					0.03125051360689213
SESLVHESW	9	Unmodified	_SESLVHESW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2485458770501	2	537.248546	1072.48254	2.0001	0.0010746	0.18651	0.0001002	2.1867	0.0011748	537.2482780281033	19.708	0.21618	19.708	19.684	19.9	0	1275	46	0.85233563	0.027647734	0.85233563	345.7799	0	11.216248						149	10	2	NaN	NaN	NaN	0.043119	1	11654	11654		49.833	34.37	1	23860			23892	1210	13774	14174	19042	19042					-0.050803146957377976
SESLVHESW	9	Unmodified	_SESLVHESW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2485458770501	2	537.248546	1072.48254	1.2401	0.00066626	0.47191	0.00025353	1.712	0.00091979	537.249082617341	19.731	0.19248	19.717	19.669	19.861	-0.014141	1278	40	0.85049206	0.02396655	0.8489726	345.032	0	9.72287						191	9	4	NaN	NaN	NaN	0.12328	1	11353	11353		32.453	23.491	1	19353			23893	1210	13774	14174	19043	19043					-0.050803146957377976
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		ENST00000585864.1_1_18:56807180-56819918:+|nuORF;ENSG00000166562|ENST00000587834|SEC11C;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENST00000585864.1_1_18:56807180-56819918:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246303001	1	942.550625	941.543348	1.6878	0.0015909	-0.20324	-0.00019156	1.4846	0.0013993	942.5502592752497	30.294	0.16891	30.294	30.222	30.391	0	297	121	1.4428991	0.07116878	1.4428991	293.20145	0	14.461731						403	8	3	NaN	NaN	NaN	0.030391	1	6853	6853		58.599	22.013	1	61109			23894	4494	13775	14175	19044	19044					0.070238223544834
SESSDSGSGFW	11	Unmodified	_SESSDSGSGFW_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1145.4381736475	1	1145.43817	1144.4309	2.762	0.0031637	-0.39124	-0.00044814	2.3708	0.0027156	1145.4381832853921	23.682	0.21682	23.682	23.634	23.851	0	141	46	1.5352125	0.026554108	1.5352125	311.16135	0	5.3820496						150	10	2	NaN	NaN	NaN	0.022256	1	14600	14600		60.984	33.195	1	12533			23895	2510	13776	14176	19045	19045					-0.1355410318030863
SESSDSGSGFW	11	Unmodified	_SESSDSGSGFW_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1145.4381736475	1	1145.43817	1144.4309	2.4432	0.0027985	0.36064	0.00041309	2.8038	0.0032116	1145.438856796238	23.706	0.16869	23.693	23.645	23.813	-0.013048	141	46	1.5352125	0.026554108	1.5336931	311.16135	0	5.3820496						157	8	2	NaN	NaN	NaN	0.009927	1	14120	14120		69.363	39.765	1	12492			23896	2510	13776	14176	19046	19046					-0.1355410318030863
SESTGPAP	8	Unmodified	_SESTGPAP_					0	0	0		ENST00000494373.1_1_2:54014321-54014507:+|nuORF;ENST00000405123.7_1_2:54014321-54021524:+|nuORF	ENST00000494373.1_1_2:54014321-54014507:+|nuORF	ENST00000494373.1_1_2:54014321-54014507:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.3362747584	1	745.336275	744.328998	1.7507	0.0013048	5.5234	0.0041168	7.274	0.0054216	745.3400965947307	21.898	0.048258	21.898	21.874	21.922	0	630	43	1.2441287	0.025216103	1.2441287	253.77419	0	5.143524						48	3	2	NaN	NaN	NaN	0.79379	1	3971	3971		10.052	0	1	4674.6			23897	6842	13777	14177	19047	19047					-0.053393047414260764
SESTGPAP	8	Unmodified						0	0	0		ENST00000494373.1_1_2:54014321-54014507:+|nuORF;ENST00000405123.7_1_2:54014321-54021524:+|nuORF	ENST00000494373.1_1_2:54014321-54014507:+|nuORF	ENST00000494373.1_1_2:54014321-54014507:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	745.336275	744.328998	1.6476	0.001228	4.1525	0.003095	5.8001	0.004323	745.3394215083941	21.898	0.096384	21.884	21.86	21.956	-0.013895	627	40	1.24593	0.023418784	1.2444105	254.14162		4.7769165	-0.0070647	-0.00041891	0.00014091	NaN	10.052	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8442.6			23898	6842	13777	14177							-0.053393047414260764
SESTLIALL	9	Unmodified	_SESTLIALL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5455392524001	1	946.545539	945.538263	1.1677	0.0011053	-0.91375	-0.0008649	0.254	0.00024042	946.5444062767971	32.9	0.096561	32.9	32.852	32.949	0	288	82	1.4482387	0.04802096	1.4482387	294.26855	0	9.757416						201	5	3	NaN	NaN	NaN	0.030391	1	6972	6972		58.599	27.038	1	20671			23899	3260	13778	14178	19048	19048					0.06331518491856514
SESTLIALL	9	Unmodified	_SESTLIALL_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC;ENST00000558761.5_1_15:50545740-50557820:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5455392524001	1	946.545539	945.538263	1.1487	0.0010873	-1.1774	-0.0011145	-0.028662	-2.713E-05	946.5447255520082	32.899	0.096512	32.897	32.873	32.969	-0.0024757	285	79	1.4500183	0.046239972	1.4484988	294.63013	0	9.395538						183	5	3	NaN	NaN	NaN	0.03623	1	6839	6839		52.758	5.7181	1	18339			23900	3260	13778	14178	19049	19049					0.06331518491856514
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000574871.1_1_17:4798302-4798913:+|nuORF	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.86450585966674	3	374.864506	1121.57169	2.2188	0.00083173	1.3266	0.00049728	3.5453	0.001329	374.86401030521444	13.493	0.072062	13.493	13.469	13.541	0	1503	25	0.711653	0.0148682	0.711653	432.81543	0	9.042572						42	4	2	NaN	NaN	NaN	0.58159	1	13746	13746		3.5794	0.0096432	1	2293.2			23901	3327	13779	14179	19050	19050					0.015765202637794573
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000574871.1_1_17:4798302-4798913:+|nuORF	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7931205562002	2	561.793121	1121.57169	2.2833	0.0012827	1.644	0.00092359	3.9273	0.0022063	561.7947766308697	13.493	0.072062	13.493	13.469	13.541	0	1239	37	0.87444305	0.022095501	0.87444305	354.5516	0	8.958801						46	4	2	NaN	NaN	NaN	0.49999	1	13747	13747		9.6116	3.1817	1	2686.6			23902	3327	13779	14179	19051	19051					0.015765202637794573
SETVKYLN	8	Unmodified	_SETVKYLN_					0	0	0		LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.25055724974993	2	477.250557	952.486562	1.9895	0.0009495	-2.8898	-0.0013792	-0.90032	-0.00042968	477.2497413042843	17.549	0.071873	17.549	17.525	17.597	0	1383	28	0.7858409	0.016655207	0.7858409	319.31277	0	6.7675476						42	4	2	NaN	NaN	NaN	0.83582	1	7151	7151		4.4131	0.44458	1	3027.3			23903	587	13780	14180	19052	19052					0.008417747979365231
SEVDQVLL	8	Unmodified	_SEVDQVLL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4829389956002	1	902.482939	901.475663	1.5034	0.0013568	0.17326	0.00015636	1.6767	0.0015132	902.4835398759666	29.401	0.072382	29.401	29.377	29.449	0	363	64	1.4036897	0.037484884	1.4036897	285.41666	0	7.6219177						103	4	2	NaN	NaN	NaN	0.528	1	6109	6109		29.598	0	1	10938	+		23904	11131	13781	14181	19053	19053					0.020983724236884882
SEVTEPDHPVL	11	Unmodified	_SEVTEPDHPVL_					0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.80114255355	2	611.801143	1221.58773	1.6836	0.00103	2.6446	0.001618	4.3282	0.002648	611.8039305833215	20.237	0.024006	20.222	20.222	20.246	-0.014143	1185	34	0.90755045	0.020213723	0.906031	367.6093	0	8.187683						37	2	2	NaN	NaN	NaN	0.74155	1	16327	16327		4.7291	0.41892	1	3399.8			23905	5228	13782	14182	19054	19054					-0.014198182900145184
SEVTEPDHPVL	11	Unmodified						0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.801143	1221.58773	1.1341	0.00069382	9.0018	0.0055073	10.136	0.0062011	611.806731987682	20.237	0.048065	20.237	20.213	20.261	0	1179	37	0.9112251	0.022050142	0.9112251	369.09772		8.931549	0.0071653	0.0035828	0.002597	NaN	4.7291	52	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4014.1			23906	5228	13782	14182							-0.014198182900145184
SEVTVGTR	8	Unmodified	_SEVTVGTR_					0	0	0			REV__ENST00000366676.5_1_1:229729961-229730033:-|nuORF	REV__ENST00000366676.5_1_1:229729961-229730033:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	848.4472221913002	1	848.447222	847.439946	1.6204	0.0013748	3.6838	0.0031255	5.3042	0.0045003	848.4490828001731	26.143	0.14479	26.131	26.107	26.252	-0.011137	399	85	1.382264	0.050057173	1.3807446	281.32944	0	10.188019						208	7	2	NaN	NaN	NaN	0.80692	1	5225	5225		8.2903	0.74991	1	18614	+		23907	11855	13783	14183	19055	19055					0.010123349666741888
SFAAATSAG	9	Unmodified	_SFAAATSAG_					0	0	0			REV__ENST00000311083.9_1_12:77257103-77272784:-|nuORF	REV__ENST00000311083.9_1_12:77257103-77272784:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.3679092378001	1	782.367909	781.360633	1.8519	0.0014489	5.1626	0.0040391	7.0145	0.0054879	782.3719687392266	23.127	0.12059	23.114	23.09	23.21	-0.013296	507	85	1.3178225	0.05024433	1.316303	268.57553	0	10.239899						172	6	2	NaN	NaN	NaN	0.49672	1	4425	4425		9.746	2.2056	1	16000	+		23908	11688	13784	14184	19056	19056					-0.038793119874753756
SFAAATSAG	9	Unmodified						0	0	0			REV__ENST00000311083.9_1_12:77257103-77272784:-|nuORF	REV__ENST00000311083.9_1_12:77257103-77272784:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	782.367909	781.360633	1.8519	0.0014489	5.1626	0.0040391	7.0145	0.0054879	782.3719687392266	23.127	0.12059	23.114	23.09	23.21	-0.013296	507	85	1.3178225	0.05024433	1.316303	268.57553		10.239899	0.005098	-8.3965E-05	-0.0016564	NaN	9.746	172	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16000	+		23909	11688	13784	14184							-0.038793119874753756
SFAGVAVL	8	Unmodified	_SFAGVAVL_					0	0	0		ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.4348665910001	1	763.434867	762.42759	1.5542	0.0011865	-0.3932	-0.00030018	1.161	0.00088633	763.4345025791029	27.591	0.16891	27.591	27.543	27.712	0	537	58	1.2998781	0.03411436	1.2998781	265.03198	0	6.9555664						208	8	3	NaN	NaN	NaN	0.45125	1	4250	4250		33.698	5.0318	1	30999			23910	5277	13785	14185	19057	19057					0.03687343294279799
SFAGVAVL	8	Unmodified	_SFAGVAVL_					0	0	0		ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.4348665910001	1	763.434867	762.42759	1.2806	0.00097766	-0.57967	-0.00044254	0.70094	0.00053512	763.43425372881	27.59	0.19303	27.581	27.557	27.75	-0.009552	537	67	1.2998781	0.03950286	1.2983587	265.03198	0	8.05426						209	9	3	NaN	NaN	NaN	0.12449	1	4176	4176		59.445	17.985	1	32037			23911	5277	13785	14185	19058	19058					0.03687343294279799
SFAIGFYLLL	10	Unmodified	_SFAIGFYLLL_					0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3260679165501	2	572.326068	1142.63758	1.3945	0.0007981	-3.9224	-0.0022449	-2.5279	-0.0014468	572.3242571949727	32.539	0.072376	32.539	32.514	32.587	0	1137	43	0.9369253	0.02568084	0.9369253	379.80063	0	10.410187						71	4	2	NaN	NaN	NaN	0.75966	1	14560	14560		3.9685	0	1	5899.5			23912	2712	13786	14186	19059	19059					0.0719696117660078
SFAIGFYLLL	10	Unmodified						0	0	0		ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	ENSG00000131482|ENST00000253801|G6PC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.326068	1142.63758	0.86778	0.00049665	-0.81891	-0.00046868	0.048873	2.7971E-05	572.3249559697542	32.586	0.072323	32.583	32.534	32.607	-0.0031052	1137	43	0.9369253	0.02568084	0.93540585	379.8006		10.410217	0.022034	0.0014494	-0.00075972	NaN	3.9685	89	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7283.1			23913	2712	13786	14186							0.0719696117660078
SFDAEEFF	8	Unmodified	_SFDAEEFF_					0	0	0			REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF	REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.4043543236	1	991.404354	990.397078	1.2022	0.0011919	-1.0226	-0.0010138	0.17962	0.00017808	991.4036190719095	31.38	0.14481	31.38	31.332	31.477	0	297	52	1.4428991	0.030264378	1.4428991	292.99286	0	6.145447						143	7	2	NaN	NaN	NaN	0.72043	1	8223	8223		17.78	0	1	14338	+		23914	9268	13787	14187	19060	19060					-0.0985047988142469
SFDATGSGF	9	Unmodified	_SFDATGSGF_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.3733885462002	1	888.373389	887.366112	2.0133	0.0017886	0.33587	0.00029838	2.3492	0.002087	888.3735490560645	21.898	0.24104	21.898	21.85	22.091	0	450	52	1.3518641	0.030425906	1.3518641	274.94452	0	6.1880493						248	11	3	NaN	NaN	NaN	0.0040938	1	5900	5900		104.71	49.217	1	26338			23915	7990	13788	14188	19061	19061					-0.08207633195638664
SFDATGSGF	9	Unmodified	_SFDATGSGF_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.3733885462002	1	888.373389	887.366112	1.4189	0.0012605	0.13372	0.00011879	1.5526	0.0013793	888.3732180600439	21.874	0.19264	21.86	21.836	22.028	-0.013895	450	58	1.3518641	0.034001708	1.3503447	274.94452	0	6.9153137						255	9	3	NaN	NaN	NaN	0.013281	1	5778	5778		82.96	48.521	1	27390			23916	7990	13788	14188	19062	19062					-0.08207633195638664
SFDAVLEAL	9	Unmodified	_SFDAVLEAL_					0	0	0		ENST00000585896.5_1_19:14020678-14030767:+|nuORF;CC2D1A|p.P345Rfs*89|1|0.33|ENSG00000132024|chr19:13918922-13918922|A/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.321	0.0012741	-0.38333	-0.00036972	0.9377	0.00090441	964.4980590983662	32.587	0.12067	32.587	32.539	32.659	0	273	91	1.4571344	0.05338788	1.4571344	295.99683	0	10.845032						196	6	3	NaN	NaN	NaN	0.056143	1	7436	7436		44.302	19.341	1	18850			23917	78	13789	14189	19063	19063					0.008106589407248066
SFDAVLEAL	9	Unmodified	_SFDAVLEAL_					0	0	0		ENST00000585896.5_1_19:14020678-14030767:+|nuORF;CC2D1A|p.P345Rfs*89|1|0.33|ENSG00000132024|chr19:13918922-13918922|A/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	ENST00000585896.5_1_19:14020678-14030767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	0.93043	0.0008974	-1.0138	-0.00097782	-0.083382	-8.0422E-05	964.4983105482211	32.586	0.12061	32.583	32.534	32.655	-0.0031052	270	88	1.458913	0.051605582	1.4573935	296.35812	0	10.482971						217	6	3	NaN	NaN	NaN	0.062072	1	7281	7281		41.785	5.198	1	18513			23918	78	13789	14189	19064	19064					0.008106589407248066
SFDGIIAMM	9	Unmodified	_SFDGIIAMM_					0	0	0		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4529011956001	1	984.452901	983.445625	1.5904	0.0015656	-1.7448	-0.0017176	-0.1544	-0.000152	984.4521856123279	33.19	0.31372	33.19	33.118	33.431	0	264	103	1.4624695	0.060454845	1.4624695	296.9956	0	12.277069						744	14	5	NaN	NaN	NaN	0.0081087	1	7998	7998		96.245	64.684	1	193720			23919	5953	13790	14190	19065	19065					-0.04676025837522957
SFDGIIAMM	9	Unmodified	_SFDGIIAMM_					0	0	0		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4529011956001	1	984.452901	983.445625	1.4642	0.0014415	-1.1457	-0.0011278	0.31857	0.00031362	984.452760859592	33.189	0.24129	33.186	33.114	33.355	-0.0024796	264	130	1.4624695	0.07649422	1.46095	296.9956	0	15.534332						718	11	5	NaN	NaN	NaN	0.014046	1	7821	7821		80.639	49.848	1	183230			23920	5953	13790	14190	19066	19066					-0.04676025837522957
SFDGIIAMM	9	Oxidation (M)	_SFDGIIAMM(Oxidation (M))_		SFDGIIAM(0.021)M(0.979)		SFDGIIAM(-17)M(17)	0	0	1		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4478158177002	1	1000.44782	999.440539	2.1969	0.0021979	-1.359	-0.0013596	0.83795	0.00083832	1000.4470884027877	27.833	0.36194	27.833	27.664	28.026	0	258	133	1.4660252	0.07827735	1.4660252	297.65186	0	15.892883						768	16	4	NaN	NaN	NaN	0.012648	1	8554	8554		84.879	45.961	2	211840			23921	5953	13790	14191	19067	19067		606;607			-0.05920329700131788
SFDGIIAMM	9	Oxidation (M)	_SFDGIIAM(Oxidation (M))M_		SFDGIIAM(0.988)M(0.012)		SFDGIIAM(19)M(-19)	0	0	1		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4478158177002	1	1000.44782	999.440539	1.9022	0.001903	0.38472	0.0003849	2.2869	0.0022879	1000.4483122753608	29.112	0.19306	29.112	28.967	29.16	0	252	127	1.4695803	0.07463205	1.4695803	298.37363	0	15.152771						497	9	5	NaN	NaN	NaN	0.00050979	1	8555	8555		115.51	78.207	2	127470			23922	5953	13790	14191	19068	19068		606;607			-0.05920329700131788
SFDGIIAMM	9	Oxidation (M)	_SFDGIIAMM(Oxidation (M))_		SFDGIIAM(0.009)M(0.991)		SFDGIIAM(-20)M(20)	0	0	1		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4478158177002	1	1000.44782	999.440539	1.6423	0.0016431	-0.73393	-0.00073426	0.90839	0.0009088	1000.448007203591	27.832	0.2655	27.822	27.75	28.015	-0.009552	258	118	1.4660252	0.06933427	1.4645058	297.65186	0	14.077148						810	12	5	NaN	NaN	NaN	0.00011853	1	8367	8367		121.78	82.864	2	219560			23923	5953	13790	14191	19069	19069		606;607			-0.05920329700131788
SFDGIIAMM	9	Oxidation (M)	_SFDGIIAM(Oxidation (M))M_		SFDGIIAM(0.5)M(0.5)		SFDGIIAM(0)M(0)	0	0	1		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4478158177002	1	1000.44782	999.440539	1.5512	0.0015519	0.64459	0.00064488	2.1958	0.0021967	1000.4485638898042	29.111	0.14478	29.103	29.007	29.151	-0.0077209	249	118	1.4713576	0.06928277	1.4698381	298.73447	0	14.066711						488	7	5	NaN	NaN	NaN	0.012648	1	8368	8368		84.879	57.09	2	127250			23924	5953	13790	14191	19070	19070		606;607			-0.05920329700131788
SFDGIIAMM	9	2 Oxidation (M)	_SFDGIIAM(Oxidation (M))M(Oxidation (M))_		SFDGIIAM(1)M(1)		SFDGIIAM(120)M(120)	0	0	2		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.4427304398001	1	1016.44273	1015.43545	2.4254	0.0024653	-2.0794	-0.0021136	0.34597	0.00035166	1016.4416425297003	24.116	0.31374	24.116	24.044	24.357	0	258	97	1.4660252	0.056898713	1.4660252	297.58804	0	11.549866						738	14	5	NaN	NaN	NaN	0.00050979	1	9181	9181		115.51	68.469	1	238900			23925	5953	13790	14192	19071	19071		606;607			-0.07164633562751987
SFDGIIAMM	9	2 Oxidation (M)	_SFDGIIAM(Oxidation (M))M(Oxidation (M))_		SFDGIIAM(1)M(1)		SFDGIIAM(110)M(110)	0	0	2		ENST00000423067.1_1_2:75878548-75878614:-|nuORF;ENSG00000213246|ENST00000225504|SUPT4H1	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	ENST00000423067.1_1_2:75878548-75878614:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4427304398001	1	1016.44273	1015.43545	2.188	0.0022239	-1.6606	-0.0016879	0.52739	0.00053607	1016.4419304698175	24.14	0.24131	24.127	24.055	24.296	-0.012749	258	127	1.4660252	0.07471132	1.4645058	297.58804	0	15.165619						702	11	5	NaN	NaN	NaN	0.002833	1	9002	9002		108.51	61.469	1	225150			23926	5953	13790	14192	19072	19072		606;607			-0.07164633562751987
SFDLAKVLL	9	Unmodified	_SFDLAKVLL_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.30259282025	2	503.302593	1004.59063	1.1032	0.00055524	-0.83904	-0.00042229	0.26416	0.00013295	503.3019702884143	30.872	0.096565	30.866	30.818	30.915	-0.0057545	1266	34	0.85786515	0.020272791	0.8563457	348.32126	0	8.231415						83	5	2	NaN	NaN	NaN	0.44082	1	8606	8606		12.049	2.3027	1	9421.5			23927	2305	13791	14193	19073	19073					0.08852101625473097
SFDLAKVLL	9	Unmodified						0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.302593	1004.59063	1.0271	0.00051693	-1.3145	-0.00066157	-0.28739	-0.00014465	503.3017071422851	30.849	0.072369	30.849	30.825	30.897	0	1269	40	0.8560222	0.023961365	0.8560222	347.57294		9.729095	-0.0086359	-0.00027452	-0.00016177	NaN	12.049	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9535.5			23928	2305	13791	14193							0.08852101625473097
SFDRFLLL	8	Unmodified	_SFDRFLLL_					0	0	0			REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5669433965003	1	1010.56694	1009.55967	0.88495	0.0008943	-9.1641	-0.0092609	-8.2791	-0.0083666	1010.5576441360738	33.624	0.096447	33.624	33.576	33.673	0	165	106	1.5210435	0.061992407	1.5210435	308.7803	0	12.584808						185	5	2	NaN	NaN	NaN	0.6117	1	8967	8967		24.562	0	1	14052	+		23929	12125	13792	14194	19074	19074					0.0552694831125109
SFDRFLLL	8	Unmodified						0	0	0			REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1010.56694	1009.55967	0.88495	0.0008943	-9.1641	-0.0092609	-8.2791	-0.0083666	1010.5576441360738	33.624	0.096447	33.624	33.576	33.673	0	165	106	1.5210435	0.061992407	1.5210435	308.7803		12.584808	0.013601	-5.1233E-05	0.0016457	NaN	24.562	185	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14052	+		23930	12125	13792	14194							0.0552694831125109
SFDRFLLL	8	Unmodified						0	0	0			REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	REV__ENST00000425103.5_1_4:6883046-6883184:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1010.56694	1009.55967	0.88623	0.0008956	-9.0537	-0.0091494	-8.1675	-0.0082538	1010.558659643285	33.599	0.096516	33.597	33.573	33.67	-0.0018501	168	94	1.5192716	0.05490172	1.5177522	308.4206		11.145355	-0.013601	6.0253E-05	-0.0016457	NaN	24.562	162	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11969	+		23931	12125	13792	14194							0.0552694831125109
SFDSALQSV	9	Unmodified	_SFDSALQSV_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.4574525266	1	953.457453	952.450176	1.4827	0.0014137	-0.15815	-0.00015079	1.3245	0.0012629	953.4574133334115	24.26	0.16895	24.248	24.224	24.393	-0.012749	315	127	1.4322147	0.07484639	1.4306953	290.9823	0	15.206512						218	8	2	NaN	NaN	NaN	0.13602	1	7003	7003		30.61	10.161	1	33909			23932	3801	13793	14195	19075	19075					-0.02795102098764346
SFDSGSVRL	9	Unmodified	_SFDSGSVRL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.24580622285004	2	484.245806	966.47706	2.0007	0.00096881	-2.2312	-0.0010804	-0.23049	-0.00011161	484.2446684477149	19.804	0.14414	19.804	19.756	19.9	0	1347	40	0.8080346	0.024028838	0.8080346	328.26318	0	9.761719						161	7	4	NaN	NaN	NaN	0.03533	1	7521	7521		53.14	8.5018	1	18584			23933	2150	13794	14196	19076	19076					-0.007519934875631407
SFDSTVRL	8	Unmodified	_SFDSTVRL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.74289939315	2	462.742899	923.471246	0.91855	0.00042505	-0.12534	-5.8002E-05	0.79321	0.00036705	462.7428287519115	20.501	0.21656	20.501	20.453	20.67	0	1350	70	0.80618626	0.042508066	0.80618626	327.7261	0	17.28012						300	10	3	NaN	NaN	NaN	0.26128	1	6471	6471		45.165	0	1	77342			23934	1095	13795	14197	19077	19077					0.006449080007655539
SFDSTVRL	8	Unmodified	_SFDSTVRL_					0	0	0		ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000177565|ENST00000457928|TBL1XR1	ENSG00000177565|ENST00000457928|TBL1XR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.74289939315	2	462.742899	923.471246	0.71522	0.00033096	-0.56927	-0.00026342	0.14595	6.7538E-05	462.74298771626843	20.525	0.21674	20.511	20.463	20.68	-0.014141	1350	67	0.80618626	0.04065764	0.8046668	327.7261	0	16.527924						324	10	3	NaN	NaN	NaN	0.076044	1	6346	6346		70.6	0	1	74912			23935	1095	13795	14197	19078	19078					0.006449080007655539
SFDSVPVSL	9	Unmodified	_SFDSVPVSL_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4829389956002	1	950.482939	949.475663	1.7171	0.0016321	-2.2823	-0.0021693	-0.56521	-0.00053722	950.4804840895266	27.808	0.14479	27.808	27.712	27.857	0	282	91	1.4517976	0.05341065	1.4517976	294.97412	0	10.851898						194	7	2	NaN	NaN	NaN	0.23112	1	7068	7068		23.334	2.779	1	22427			23936	1731	13796	14198	19079	19079					-0.0010962757631887143
SFDSVPVSL	9	Unmodified	_SFDSVPVSL_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4829389956002	1	950.482939	949.475663	1.119	0.0010636	-3.5374	-0.0033622	-2.4184	-0.0022986	950.4778445456049	27.808	0.14485	27.798	27.75	27.895	-0.009552	279	91	1.4535767	0.053404927	1.4520572	295.3356	0	10.850739						215	7	2	NaN	NaN	NaN	0.094712	1	6939	6939		36.586	21.411	1	24641			23937	1731	13796	14198	19080	19080					-0.0010962757631887143
SFDTGFTSF	9	Unmodified	_SFDTGFTSF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4309034251	1	1008.4309	1007.42363	2.0419	0.0020592	-0.24698	-0.00024906	1.795	0.0018101	1008.4308026064065	28.267	0.24131	28.267	28.243	28.484	0	240	112	1.4766881	0.06575763	1.4766881	299.78442	0	13.349579						569	11	5	NaN	NaN	NaN	2.9468E-07	1	8862	8862		130.62	60.019	1	121090			23938	1584	13797	14199	19081	19081					-0.07978790990091511
SFDTGFTSF	9	Unmodified	_SFDTGFTSF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4309034251	1	1008.4309	1007.42363	1.5239	0.0015368	0.37949	0.00038269	1.9034	0.0019194	1008.4302560590053	28.29	0.2413	28.281	28.233	28.474	-0.0089779	240	109	1.4766881	0.06395674	1.4751687	299.78442	0	12.983917						586	11	4	NaN	NaN	NaN	0.00020136	1	8691	8691		116.74	63.978	1	125440			23939	1584	13797	14199	19082	19082					-0.07978790990091511
SFDWTVKL	8	Unmodified	_SFDWTVKL_					0	0	0		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1;ENST00000497626.1_1_7:95661984-95685193:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.26346765975	2	498.263468	994.512382	1.1122	0.00055418	-2.9846	-0.0014871	-1.8723	-0.00093292	498.2622987791763	27.301	0.07239	27.291	27.291	27.363	-0.010126	1323	31	0.8228144	0.018464744	0.82129496	334.13525	0	7.4983215						72	4	3	NaN	NaN	NaN	0.69825	1	8207	8207		19.164	0.045272	1	6109.1			23940	868	13798	14200	19083	19083					0.014906690402312961
SFEASPFAIA	10	Unmodified	_SFEASPFAIA_					0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2583822818501	2	520.258382	1038.50221	1.5528	0.00080788	-1.4767	-0.00076825	0.076185	3.9636E-05	520.257509696398	23.055	0.26511	23.041	22.921	23.186	-0.013294	1296	64	0.8394264	0.038740337	0.83790696	340.68408	0	15.7229						221	12	2	NaN	NaN	NaN	0.62764	1	9921	9921		13.003	3.2568	1	36794	+		23941	11425	13799	14201	19084	19084					-0.015499386849796792
SFELCPHPSA	10	Unmodified	_SFELCPHPSA_					0	0	0		ENST00000308234.11_1_5:98129769-98129967:+|nuORF	ENST00000308234.11_1_5:98129769-98129967:+|nuORF	ENST00000308234.11_1_5:98129769-98129967:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.1674199102334	3	363.16742	1086.48043	1.1899	0.00043214	5.6529	0.0020529	6.8428	0.0024851	363.1695537096018	20.887	0.14447	20.873	20.849	20.993	-0.014088	1497	61	0.71537006	0.037162423	0.7138506	435.2463	0	22.610413						203	7	4	NaN	NaN	NaN	0.65442	1	11919	11919		6.1406	0	1	33651			23942	6435	13800	14202	19085	19085					-0.05935066705205827
SFELQLWN	8	Unmodified	_SFELQLWN_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7585494573501	2	518.758549	1035.50255	1.7609	0.00091347	-7.867	-0.0040811	-6.1061	-0.0031676	518.7540855732074	25.057	0.096518	25.057	25.057	25.153	0	1308	76	0.83204526	0.04613936	0.83204526	337.70126	0	18.726532						181	5	2	NaN	NaN	NaN	0.78264	1	10006	10006		11.548	0.94349	1	19490			23943	3598	13801	14203	19086	19086					-0.013785189651343899
SFEPGGGG	8	Unmodified	_SFEPGGGG_					0	0	0		ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.2994953216003	1	707.299495	706.292219	1.8025	0.0012749	-1.3233	-0.00093598	0.47916	0.00033891	707.2986370109126	18.434	0.19207	18.42	18.348	18.54	-0.01395	1377	28	0.7895419	0.01665157	0.78802246	161.20555	0	3.3998566						124	9	2	NaN	NaN	NaN	0.84945	1	3274	3274		0	0	1	8956.3			23944	7481	13802	14204	19087	19087					-0.0726755656730802
SFEPGGGG	8	Unmodified						0	0	0		ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	707.299495	706.292219	1.8137	0.0012828	0.66955	0.00047357	2.4832	0.0017564	707.2994417648054	18.436	0.19193	18.436	18.34	18.532	0	1377	31	0.7895419	0.018502772	0.7895419	161.20554		3.7778168	0.008387	0.00075245	0.00075972	NaN	0	131	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9485.1			23945	7481	13802	14204							-0.0726755656730802
SFEPLLGIL	9	Unmodified	_SFEPLLGIL_					0	0	0			REV__PUS7L|p.P158L|1|0.09|ENSG00000129317|chr12:43754773-43754773|G/A|missense_variant	REV__PUS7L|p.P158L|1|0.09|ENSG00000129317|chr12:43754773-43754773|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.78931826950003	2	494.789318	987.564084	0.44214	0.00021877	-2.0431	-0.0010109	-1.6009	-0.00079212	494.7886186629373	33.334	0.072384	33.331	33.283	33.355	-0.0024757	1332	40	0.8172735	0.024015844	0.81575406	331.917	0	9.753479						90	4	3	NaN	NaN	NaN	0.20577	1	7978	7978		24.961	4.4056	1	10207	+		23946	13304	13803	14205	19088	19088					0.06980412734139918
SFFFLLLLL	9	Unmodified	_SFFFLLLLL_					0	0	0		ENST00000453168.5_1_3:31574350-31574467:+|nuORF	ENST00000453168.5_1_3:31574350-31574467:+|nuORF	ENST00000453168.5_1_3:31574350-31574467:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.6754312134	1	1112.67543	1111.66815	1.9109	0.0021262	-3.0618	-0.0034068	-1.1509	-0.0012806	1112.67306724648	35.818	0.048203	35.819	35.819	35.867	0.00052643	72	34	1.5758814	0.01942563	1.5743619	319.51648	0	3.9386292						40	3	2	NaN	NaN	NaN	0.45297	1	12977	12977		11.548	0	1	2313.5			23947	7048	13804	14206	19089	19089					0.11678739561671136
SFFNFFAPPE	10	Unmodified	_SFFNFFAPPE_					0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7794818647002	2	601.779482	1201.54441	1.2762	0.00076799	-3.1202	-0.0018777	-1.844	-0.0011097	601.7786927245211	23.151	0.16877	23.138	23.065	23.234	-0.013294	1185	79	0.90755045	0.047770202	0.906031	367.67783	0	19.353271						265	8	3	NaN	NaN	NaN	0.25724	1	15865	15865		30.61	6.0481	1	38554			23948	5495	13805	14207	19090	19090					-0.04829963276597482
SFFNFFAPPE	10	Unmodified						0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.779482	1201.54441	1.5407	0.00092718	2.684	0.0016152	4.2247	0.0025423	601.7808368255413	23.538	0.2651	23.538	23.465	23.73	0	1173	76	0.91489893	0.04594034	0.91489893	370.6549		18.611908	0.19991	0.0037088	0.004434	NaN	30.61	146	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22790			23949	5495	13805	14207							-0.04829963276597482
SFFNGCCCAV	10	Unmodified	_SFFNGCCCAV_					0	0	0			REV__nc|ENSG00000073464|P51793-2|CLCN4	REV__nc|ENSG00000073464|P51793-2|CLCN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.695723085	2	525.695723	1049.37689	1.3707	0.00072057	1.4574	0.00076617	2.8281	0.0014867	525.6966356091978	28.629	0.19307	28.629	28.556	28.75	0	1326	46	0.8209676	0.027704597	0.8209676	333.14734	0	11.242493						161	9	3	NaN	NaN	NaN	0.72631	1	10590	10590		6.2502	2.2817	1	12964	+		23950	8593	13806	14208	19091	19091					-0.14582013408880812
SFFSGITGFI	10	Unmodified	_SFFSGITGFI_					0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2765750350001	2	538.276575	1074.5386	0.93385	0.00050267	-8.7868	-0.0047297	-7.853	-0.0042271	538.2720277105774	29.111	0.19306	29.103	29.079	29.272	-0.0077209	1203	49	0.8965218	0.029425621	0.89500237	363.6968	0	11.937225						162	9	2	NaN	NaN	NaN	0.69717	1	11445	11445		8.2448	1.3816	1	18757			23951	7555	13807	14209	19092	19092					0.004309382117071436
SFFSGITGFI	10	Unmodified						0	0	0		ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENST00000552207.1_1_12:56188062-56211500:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.276575	1074.5386	1.5599	0.00083964	-8.5229	-0.0045877	-6.963	-0.003748	538.2723602640897	29.087	0.1448	29.087	29.063	29.208	0	1209	58	0.892844	0.034948587	0.892844	362.2048		14.177765	-0.0078101	0.00011891	-0.0010792	NaN	8.2448	195	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21623			23952	7555	13807	14209							0.004309382117071436
SFFSITGLM	9	Unmodified	_SFFSITGLM_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4964805698	1	1002.49648	1001.4892	1.6239	0.0016279	-2.3888	-0.0023947	-0.76486	-0.00076677	1002.4946926148081	26.504	0.12064	26.494	26.421	26.542	-0.010645	207	211	1.496219	0.12440014	1.4946996	303.77374	0	25.256653						425	6	3	NaN	NaN	NaN	0.062072	1	8477	8477		41.785	8.0862	1	73659	+		23953	8836	13808	14210	19093	19093					-0.011480930687412183
SFFSITGLM	9	Unmodified						0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1002.49648	1001.4892	2.1264	0.0021317	-4.05	-0.0040601	-1.9237	-0.0019285	1002.4922803821955	26.505	0.072388	26.505	26.481	26.553	0	207	223	1.496219	0.13153672	1.496219	303.77374		26.705566	0.0054718	-0.0004466	0.00075972	NaN	41.785	451	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77515	+		23954	8836	13808	14210							-0.011480930687412183
SFFSITGLM	9	Unmodified						0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1002.49648	1001.4892	1.6239	0.0016279	-2.3888	-0.0023947	-0.76486	-0.00076677	1002.4946926148081	26.504	0.12064	26.494	26.421	26.542	-0.010645	207	211	1.496219	0.12440014	1.4946996	303.77374		25.256653	-0.0054718	0.0012188	-0.00075972	NaN	41.785	425	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73659	+		23955	8836	13808	14210							-0.011480930687412183
SFGAGAAA	8	Unmodified	_SFGAGAAA_					0	0	0			REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	326.158471272	2	326.158471	650.30239	1.386	0.00045207	3.3403	0.0010895	4.7264	0.0015415	326.1592469145992	43.249	0.11976	43.249	43.153	43.273	0	1536	43	0.69119483	0.026047647	0.69119483	282.70364	0	10.653656						76	6	2	NaN	NaN	NaN	0.84692	1	2052	2052		1.4396	0	1	4725.8	+		23956	11545	13809	14211	19094	19094					-0.036749488420923626
SFGAGAAA	8	Unmodified						0	0	0			REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	REV__ENST00000261483.4_1_5:109025110-109025431:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	326.158471	650.30239	1.386	0.00045207	3.3403	0.0010895	4.7264	0.0015415	326.1592469145992	43.249	0.11976	43.249	43.153	43.273	0	1536	43	0.69119483	0.026047647	0.69119483	282.70364		10.653656	0	0	0	NaN	1.4396	76	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4725.8	+		23957	11545	13809	14211							-0.036749488420923626
SFGAGLAA	8	Unmodified	_SFGAGLAA_					0	0	0			REV__nc|ENSG00000138029|P55084-2|HADHB	REV__nc|ENSG00000138029|P55084-2|HADHB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.35661627	1	693.356616	692.34934	1.5948	0.0011057	2.5651	0.0017785	4.1599	0.0028843	693.3586430770546	25.009	0.24133	25.009	24.767	25.009	0	1041	85	0.9955231	0.051206768	0.9955231	203.33981	0	10.459213						280	11	2	NaN	NaN	NaN	0.82332	1	3086	3086		6.0903	2.0366	1	46487	+		23958	9706	13810	14212	19095	19095					-0.009140892909613285
SFGDILTEEEL	11	Unmodified	_SFGDILTEEEL_					0	0	0			REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.80080820255	2	626.800808	1251.58706	0.86388	0.00054148	-4.461	-0.0027962	-3.5971	-0.0022547	626.7985203511167	33.745	0.21719	33.745	33.624	33.842	0	1158	88	0.92408	0.053204536	0.92408	374.2045	0	21.545105						410	10	4	NaN	NaN	NaN	0.4078	1	17813	17813		21.771	1.2577	1	40097	+		23959	13082	13811	14213	19096	19096					-0.028666577297144613
SFGDILTEEEL	11	Unmodified						0	0	0			REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.800808	1251.58706	0.86388	0.00054148	-4.461	-0.0027962	-3.5971	-0.0022547	626.7985203511167	33.745	0.21719	33.745	33.624	33.842	0	1158	88	0.92408	0.053204536	0.92408	374.2045		21.545105	0.025705	-0.0017968	0.00075972	NaN	21.771	410	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40097	+		23960	13082	13811	14213							-0.028666577297144613
SFGDILTEEEL	11	Unmodified						0	0	0			REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	626.800808	1251.58706	0.39775	0.00024931	-1.788	-0.0011207	-1.3902	-0.00087141	626.7996094584378	33.695	0.2172	33.694	33.621	33.838	-0.0018501	1158	88	0.92408	0.053198814	0.9225606	374.2045		21.542786	-0.025705	0.0015541	-0.00075972	NaN	21.771	276	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38418	+		23961	13082	13811	14213							-0.028666577297144613
SFGGPLVF	8	Unmodified	_SFGGPLVF_					0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4348665910001	1	823.434867	822.42759	0.96686	0.00079614	0.36636	0.00030167	1.3332	0.0010978	823.4351914622397	33.116	0.21714	33.114	33.066	33.283	-0.0024757	486	58	1.3303722	0.03405249	1.3288528	270.89938	0	6.9339905						223	10	2	NaN	NaN	NaN	0.50567	1	4934	4934		30.791	5.0393	1	29548	+		23962	13489	13812	14214	19097	19097					0.00927343294279126
SFGGPLVF	8	Unmodified						0	0	0			REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	REV__tr|U7STC4|U7STC4_FUSNUPhosphoribosylformylglycinamidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01008PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	823.434867	822.42759	0.96686	0.00079614	0.36636	0.00030167	1.3332	0.0010978	823.4351914622397	33.116	0.21714	33.114	33.066	33.283	-0.0024757	486	58	1.3303722	0.03405249	1.3288528	270.89938		6.9339905	-0.0018954	0.00026477	0.0001364	NaN	30.791	223	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29548	+		23963	13489	13812	14214							0.00927343294279126
SFGLPATL	8	Unmodified	_SFGLPATL_					0	0	0			REV__ENSG00000118655|ENST00000650450|DCLRE1B	REV__ENSG00000118655|ENST00000650450|DCLRE1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4454312773001	1	805.445431	804.438155	1.6675	0.0013431	-1.0053	-0.00080975	0.66216	0.00053333	805.4445275194403	27.109	0.096525	27.109	27.084	27.181	0	522	61	1.3088527	0.03589642	1.3088527	266.61536	0	7.3121643						158	5	3	NaN	NaN	NaN	0.35353	1	4800	4800		38.918	0	1	18929	+		23964	9272	13813	14215	19098	19098					0.028113259487213327
SFGMFAMALL	10	Unmodified	_SFGMFAMALL_					0	0	0			REV__tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1	REV__tr|U7T418|U7T418_FUSNUIon-translocatingoxidoreductasecomplexsubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2693811671	2	544.269381	1086.52421	0.96571	0.00052561	-9.8573	-0.0053651	-8.8916	-0.0048394	544.2638507467259	33.094	0.24131	33.094	33.069	33.311	0	1227	73	0.88180584	0.0441432	0.88180584	357.67694	0	17.905304						315	11	2	NaN	NaN	NaN	0.5081	1	12240	12240		19.118	1.338	1	59408	+		23965	13601	13814	14216	19099	19099					-0.015591735324505862
SFGSIFSSTF	10	Unmodified	_SFGSIFSSTF_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2558395929	2	540.25584	1078.49713	1.1681	0.00063109	-1.1375	-0.00061455	0.030608	1.6536E-05	540.2551911301703	31.017	0.24135	31.012	30.988	31.229	-0.0050716	1281	97	0.84864825	0.0589723	0.8471288	344.25967	0	23.922485						461	11	3	NaN	NaN	NaN	0.17937	1	11596	11596		37.302	3.6041	1	69045			23966	6485	13815	14217	19100	19100					-0.03898242547643349
SFGSIFSSTF	10	Unmodified						0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.25584	1078.49713	1.0565	0.0005708	-0.52745	-0.00028496	0.52909	0.00028584	540.2553013814352	31.042	0.24134	31.042	30.994	31.235	0	1281	85	0.84864825	0.0516119	0.84864825	344.25967		20.936676	0.015115	0.00037659	0.00075972	NaN	37.302	341	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52149			23967	6485	13815	14217							-0.03898242547643349
SFGSLIFESI	10	Unmodified	_SFGSLIFESI_					0	0	0			REV__ENSG00000171936|ENST00000641646|OR10H3	REV__ENSG00000171936|ENST00000641646|OR10H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2871397213	2	550.28714	1098.55973	1.183	0.00065098	-1.4225	-0.00078276	-0.23947	-0.00013178	550.2861690532134	32.996	0.28941	32.993	32.945	33.235	-0.0024757	1194	82	0.902037	0.049658418	0.9005176	365.83286	0	20.139618						388	13	3	NaN	NaN	NaN	0.44258	1	12457	12457		21.835	1.3863	1	128700	+		23968	10640	13816	14218	19101	19101					0.01438903520556778
SFGTLAFECI	10	Carbamidomethyl (C)	_SFGTLAFEC(Carbamidomethyl (C))I_	SFGTLAFEC(1)I		SFGTLAFEC(45)I		0	1	0		nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.77079955285	2	572.7708	1143.52705	2.0744	0.0011881	6.6087	0.0037853	8.6831	0.0049734	572.7746579062781	23.513	0.16879	23.513	23.393	23.562	0	1233	91	0.87812483	0.0552029	0.87812483	355.9614	0	22.37735						420	8	4	NaN	NaN	NaN	0.10581	1	14575	14575		45.165	7.8626	1	94900			23969	1468	13817	14219	19102	19102	1				-0.03897626873936133
SFGTLAFECI	10	Carbamidomethyl (C)						0	1	0		nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	nc|ENSG00000104365|O14920-3|IKBKB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.7708	1143.52705	1.7232	0.000987	7.3541	0.0042122	9.0773	0.0051992	572.7750482330939	23.513	0.16891	23.5	23.379	23.548	-0.013294	1233	91	0.87812483	0.0552029	0.8766054	355.96136		22.37735	-0.0068222	0.00037129	-0.00075972	NaN	45.165	437	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97725			23970	1468	13817	14219			1				-0.03897626873936133
SFHFLGLCCY	10	Unmodified	_SFHFLGLCCY_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2620874512501	2	595.262087	1188.50962	0.75041	0.00044669	-1.8526	-0.0011028	-1.1022	-0.0006561	595.262924743271	28.507	0.19301	28.499	28.427	28.62	-0.0083485	1164	94	0.9204082	0.056966007	0.91888875	372.93335	0	23.081635						415	9	3	NaN	NaN	NaN	0.62764	1	15487	15487		13.003	1.8325	1	35653			23971	7236	13818	14220	19103	19103					-0.07709245680575805
SFHHSSLFE	9	Unmodified	_SFHHSSLFE_					0	0	0		ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.4952350164	1	1090.49524	1089.48796	1.2117	0.0013213	-3.8664	-0.0042163	-2.6548	-0.002895	1090.490077221343	28.628	0.048248	28.62	28.62	28.668	-0.0083504	93	64	1.5635144	0.03712058	1.5619949	317.08817	0	7.5282593						80	3	3	NaN	NaN	NaN	0.36492	1	12052	12052		15.175	1.4383	1	6661.1			23972	4082	13819	14221	19104	19104					-0.053205911132636174
SFHKFHYL	8	Unmodified	_SFHKFHYL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7770765615	2	539.777077	1077.5396	1.2218	0.0006595	8.6056	0.0046451	9.8274	0.0053046	539.7819677065205	22.548	0.096472	22.535	22.535	22.631	-0.01354	1206	97	0.894683	0.058851242	0.89316356	362.93796	0	23.873657						73	5	2	NaN	NaN	NaN	0.84692	1	11560	11560		1.4396	0	1	12910			23973	6036	13820	14222	19105	19105					0.003931973712724357
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.76469746775	2	558.764697	1115.51484	1.5719	0.00087832	-1.9334	-0.0010803	-0.36148	-0.00020198	558.7632948425555	15.222	0.28832	15.222	15.15	15.438	0	1254	73	0.8652351	0.044219613	0.8652351	350.84128	0	17.930481						339	13	3	NaN	NaN	NaN	0.059222	1	13490	13490		42.995	19.877	1	54048			23974	3846	13821	14223	19106	19106					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.8455571340333	3	372.845557	1115.51484	1.7674	0.00065898	-2.1677	-0.00080821	-0.40025	-0.00014923	372.8447525672173	15.364	0.071851	15.352	15.304	15.376	-0.012201	1521	46	0.70049703	0.027903616	0.6989776	426.0586	0	16.971619						80	4	2	NaN	NaN	NaN	0.2961	1	13100	13100		21.85	10.885	1	9995.1			23975	3846	13821	14223	19107	19107					-0.038294825021012
SFHNIHNTF	9	Unmodified						0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	372.845557	1115.51484	1.5071	0.00056191	-2.5319	-0.000944	-1.0248	-0.00038208	372.84454497518385	15.222	0.1922	15.222	15.174	15.366	0	1524	46	0.698637	0.027903616	0.698637	424.92728		16.971619	-0.065137	-0.00020621	-0.0001703	NaN	21.85	177	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19471			23976	3846	13821	14223							-0.038294825021012
SFIDNKIM	8	Unmodified	_SFIDNKIM_					0	0	0		ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENST00000530867.1_1_11:9199613-9200479:-|nuORF	ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.24950300474995	2	484.249503	966.484453	1.7979	0.00087063	-9.1562	-0.0044339	-7.3583	-0.0035633	484.24453521712104	19.803	0.14432	19.789	19.765	19.909	-0.014141	1350	40	0.80618626	0.024028838	0.8046668	327.51227	0	9.761719						150	7	3	NaN	NaN	NaN	0.75561	1	7372	7372		15.175	0	1	19725			23977	5338	13822	14224	19108	19108					-0.00012977211520137644
SFIIVHPSW	9	Unmodified	_SFIIVHPSW_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;nc|ENSG00000106772|Q8WUY3-5|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2925594502	2	543.292559	1084.57057	1.4931	0.00081121	-4.0159	-0.0021818	-2.5228	-0.0013706	543.2907775714286	26.65	0.096537	26.65	26.601	26.698	0	1269	82	0.8560222	0.049728274	0.8560222	347.22644	0	20.171173						112	5	3	NaN	NaN	NaN	0.39244	1	12176	12176		14.042	3.99	1	8865.7			23978	1618	13823	14225	19109	19109					0.03166350685501129
SFIIVHPSW	9	Unmodified						0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;nc|ENSG00000106772|Q8WUY3-5|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.292559	1084.57057	1.2511	0.00067972	-5.9954	-0.0032573	-4.7443	-0.0025775	543.2875953185718	26.673	0.072409	26.663	26.614	26.687	-0.010643	1269	85	0.8560222	0.051578403	0.85450274	347.22644		20.92163	0.0065785	-0.0012743	-0.00075972	NaN	14.042	120	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10549			23979	1618	13823	14225							0.03166350685501129
SFILEEWG	8	Unmodified	_SFILEEWG_					0	0	0		ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4723743093001	1	980.472374	979.465098	1.6513	0.001619	5.0312	0.004933	6.6825	0.006552	980.4783134003842	34.95	0.096497	34.95	34.926	35.022	-4.5776E-05	243	49	1.4749115	0.028428197	1.473392	299.5391	0	5.773468						123	5	3	NaN	NaN	NaN	0.76633	1	7696	7696		13.737	0	1	9231			23980	5648	13824	14226	19110	19110					-0.025456102307543915
SFILEEWG	8	Unmodified						0	0	0		ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	980.472374	979.465098	1.2223	0.0011984	5.4773	0.0053704	6.6996	0.0065688	980.4791898545475	34.951	0.096378	34.951	34.903	34.999	0	243	49	1.4749115	0.028428197	1.4749115	299.5391		5.773468	0.00079572	0.00030248	0.00075972	NaN	13.737	101	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8598.8			23981	5648	13824	14226							-0.025456102307543915
SFIPHYYQ	8	Unmodified	_SFIPHYYQ_					0	0	0		ENST00000551207.2_1_14:36289043-36289391:+|nuORF	ENST00000551207.2_1_14:36289043-36289391:+|nuORF	ENST00000551207.2_1_14:36289043-36289391:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7532671142	2	527.753267	1053.49198	1.3306	0.00070225	-5.539	-0.0029232	-4.2083	-0.002221	527.7497000955788	24.695	0.096512	24.695	24.671	24.767	0	1284	49	0.8468043	0.029498875	0.8468043	343.61447	0	11.970001						86	5	2	NaN	NaN	NaN	0.82797	1	10780	10780		5.4659	0.55612	1	11067			23982	7545	13825	14227	19111	19111					-0.03262501619587965
SFITPTLSL	9	Unmodified	_SFITPTLSL_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5506246303001	1	978.550625	977.543348	1.4083	0.0013781	-1.1304	-0.0011061	0.27794	0.00027197	978.5490702351403	32.152	0.12063	32.152	32.128	32.249	0	189	73	1.5068626	0.042578936	1.5068626	306.0364	0	8.647583						160	6	3	NaN	NaN	NaN	0.39244	1	7824	7824		14.042	1.0388	1	13490	+		23983	9238	13826	14228	19112	19112					0.053678223544807224
SFITPTLSL	9	Unmodified	_SFITPTLSL_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5506246303001	1	978.550625	977.543348	1.1684	0.0011434	-0.21353	-0.00020895	0.95491	0.00093442	978.5499618394146	32.151	0.12062	32.148	32.123	32.244	-0.0037613	186	52	1.5086359	0.030148864	1.5071164	306.39655	0	6.1230774						144	6	3	NaN	NaN	NaN	0.12328	1	7664	7664		32.453	0.89171	1	13757	+		23984	9238	13826	14228	19113	19113					0.053678223544807224
SFITPTLSL	9	Unmodified						0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	978.550625	977.543348	1.4083	0.0013781	-1.1304	-0.0011061	0.27794	0.00027197	978.5490702351403	32.152	0.12063	32.152	32.128	32.249	0	189	73	1.5068626	0.042578936	1.5068626	306.0364		8.647583	0.0024194	-0.0003845	-0.00012692	NaN	32.453	160	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13490	+		23985	9238	13826	14228							0.053678223544807224
SFITPTLSL	9	Unmodified						0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	978.550625	977.543348	1.1684	0.0011434	-0.21353	-0.00020895	0.95491	0.00093442	978.5499618394146	32.151	0.12062	32.148	32.123	32.244	-0.0037613	186	52	1.5086359	0.030148864	1.5071164	306.39655		6.1230774	-0.0024194	0.00051269	0.00012692	NaN	32.453	144	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13757	+		23986	9238	13826	14228							0.053678223544807224
SFITSSWTF	9	Unmodified	_SFITSSWTF_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5094880970998	1	1075.50949	1074.50221	1.6265	0.0017493	0.2722	0.00029276	1.8987	0.002042	1075.5094770271676	32.201	0.14478	32.201	32.152	32.297	0	120	145	1.5476005	0.084950686	1.5476005	313.9155	0	17.231415						843	7	5	NaN	NaN	NaN	3.4198E-12	1	11744	11744		150.79	21.167	1	327760			23987	2071	13827	14229	19114	19114					-0.03205938685005094
SFITSSWTF	9	Unmodified	_SFITSSWTF_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5094880970998	1	1075.50949	1074.50221	1.5214	0.0016363	-0.17232	-0.00018533	1.3491	0.0014509	1075.509114860981	32.2	0.16891	32.196	32.123	32.292	-0.0037613	117	157	1.5493695	0.092039704	1.54785	314.27432	0	18.669312						828	8	5	NaN	NaN	NaN	2.9468E-07	1	11439	11439		130.62	25.908	1	323850			23988	2071	13827	14229	19115	19115					-0.03205938685005094
SFKDAAFDDVS	11	Unmodified	_SFKDAAFDDVS_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2722179386	2	601.272218	1200.52988	1.18	0.00070948	-4.823	-0.0028999	-3.643	-0.0021904	601.2692485443407	23.031	0.12039	23.017	22.969	23.09	-0.013294	1179	55	0.9112251	0.03307879	0.90970564	369.1701	0	13.401428						127	6	3	NaN	NaN	NaN	0.57804	1	15837	15837		15.463	3.414	1	17280			23989	3031	13828	14230	19116	19116					-0.06236080215444417
SFKDAAFDDVS	11	Unmodified						0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.272218	1200.52988	1.6783	0.0010091	-7.175	-0.0043142	-5.4968	-0.0033051	601.2683304916462	22.983	0.19258	22.983	22.935	23.128	0	1188	73	0.90571284	0.044105053	0.90571284	366.9369		17.86856	-0.017088	-0.0016738	-0.0019964	NaN	15.463	136	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16597			23990	3031	13828	14230							-0.06236080215444417
SFKEAKIEEHL	11	Unmodified	_SFKEAKIEEHL_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.8537094403001	2	665.853709	1329.69287	1.7001	0.001132	-0.095159	-6.3362E-05	1.605	0.0010687	665.853765042536	38.658	0.072056	38.662	38.614	38.686	0.0040245	1092	55	0.9644182	0.032964826	0.96289873	390.2889	0	13.340485						91	4	2	NaN	NaN	NaN	0.44296	1	18393	18393		20.513	3.655	1	17200			23991	355	13829	14231	19117	19117					0.04120722906441188
SFLDPEVFS	9	Unmodified	_SFLDPEVFS_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.4935036819	1	1040.4935	1039.48623	1.2832	0.0013352	4.2685	0.0044414	5.5517	0.0057765	1040.4990729059837	27.349	0.072405	27.339	27.315	27.387	-0.010126	159	70	1.5245869	0.04074657	1.5230675	309.3795	0	8.268555						99	4	2	NaN	NaN	NaN	0.23112	1	9969	9969		23.334	0	1	7165.4	+		23992	9517	13830	14232	19118	19118					-0.03193644921907435
SFLDPEVFS	9	Unmodified						0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1040.4935	1039.48623	1.2832	0.0013352	4.2685	0.0044414	5.5517	0.0057765	1040.4990729059837	27.349	0.072405	27.339	27.315	27.387	-0.010126	159	70	1.5245869	0.04074657	1.5230675	309.3795		8.268555	0.0066356	-0.0011172	-0.0016454	NaN	23.334	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7165.4	+		23993	9517	13830	14232							-0.03193644921907435
SFLESTVFIA	10	Unmodified	_SFLESTVFIA_					0	0	0			REV__ENST00000555837.5_1_14:54863771-54875466:+|nuORF	REV__ENST00000555837.5_1_14:54863771-54875466:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2949647534001	2	557.294965	1112.57538	1.9404	0.0010814	-1.4447	-0.00080513	0.49567	0.00027623	557.7927321120526	20.333	0.12025	20.319	20.222	20.343	-0.014141	1230	49	0.8799654	0.02945745	0.878446	356.82574	0	11.945007						47	6	2	NaN	NaN	NaN	0.72631	1	13004	13004		6.2502	0	1	4090.2	+		23994	12766	13831	14233	19119	19119					0.023591900376231933
SFLEYNKSLYF	11	Unmodified	_SFLEYNKSLYF_					0	0	0		ENST00000379380.8_1_5:130535290-130535404:+|nuORF	ENST00000379380.8_1_5:130535290-130535404:+|nuORF	ENST00000379380.8_1_5:130535290-130535404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.8506354351	2	705.850635	1409.68672	1.6858	0.00119	0.66998	0.00047291	2.3558	0.0016629	706.3517173817722	27.687	0.072376	27.677	27.653	27.726	-0.009552	1044	28	0.99369496	0.016454875	0.9921755	401.9021	0	6.6552124						40	4	2	NaN	NaN	NaN	0.55071	1	19192	19192		16.659	10.042	1	2678.4			23995	6721	13832	14234	19120	19120					-0.0017379532509949058
SFLFIFYLF	9	Unmodified	_SFLFIFYLF_					0	0	0			REV__ENST00000301923.13_2_22:40731254-40731416:+|nuORF	REV__ENST00000301923.13_2_22:40731254-40731416:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.8231610868501	2	598.823161	1195.63177	2.3515	0.0014081	1.5441	0.00092467	3.8956	0.0023328	599.3257401630173	23.706	0.072287	23.693	23.669	23.741	-0.013048	1173	43	0.91489893	0.025716841	0.9133795	370.67572	0	10.419312						30	4	2	NaN	NaN	NaN	0.60063	1	15696	15696		5.4659	0	1	2449	+		23996	11658	13833	14235	19121	19121					0.04177862664937493
SFLLQTMLDFL	11	Unmodified	_SFLLQTMLDFL_					0	0	0		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.35195670355	2	664.351957	1326.68936	2.5359	0.0016848	-5.329	-0.0035404	-2.7931	-0.0018556	664.3483972885304	38.73	0.52872	38.734	38.493	39.022	0.0040245	1089	100	0.96624947	0.06044531	0.96473	391.03915	0	24.462097						1528	23	5	NaN	NaN	NaN	0.26033	1	18348	18348		27.046	6.5331	1	791620			23997	4556	13834	14236	19122	19122					0.03908336808171953
SFLPSGVFDGM	11	Unmodified	_SFLPSGVFDGM_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.77079955285	2	578.7708	1155.52705	1.8448	0.0010677	7.6673	0.0044376	9.5121	0.0055053	578.7755820519034	22.405	0.14449	22.405	22.38	22.525	0	1080	118	0.9717421	0.071335375	0.9717421	393.86185	0	28.9133						321	7	3	NaN	NaN	NaN	0.77797	1	15000	15000		0.59723	0.20156	1	31718			23998	5651	13835	14237	19123	19123					-0.04449626873952184
SFLPSGVFDGM	11	Unmodified						0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.7708	1155.52705	1.2643	0.00073176	8.34	0.004827	9.6044	0.0055587	578.7757911662915	22.428	0.14451	22.414	22.39	22.535	-0.013731	1080	127	0.9717421	0.07682681	0.97022265	393.86185		31.139069	0.0048326	0.00026723	-0.00075972	NaN	0.59723	419	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45942			23999	5651	13835	14237							-0.04449626873952184
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.8264320573	2	589.826432	1177.63831	1.324	0.00078094	-1.5441	-0.00091074	-0.22007	-0.0001298	589.8254689061092	36.832	0.1203	36.832	36.784	36.904	0	1194	46	0.902037	0.027570128	0.902037	365.52838	0	11.172119						165	6	4	NaN	NaN	NaN	0.036982	1	15756	15756		53.14	31.369	1	15916			24000	6858	13836	14238	19124	19124					0.056597558256498814
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.8264320573	2	589.826432	1177.63831	1.0146	0.00059841	-1.3117	-0.00077368	-0.29716	-0.00017527	589.8258643529691	36.83	0.12034	36.832	36.783	36.904	0.0016747	1191	43	0.90387505	0.025727928	0.9023556	366.2732	0	10.425629						150	6	3	NaN	NaN	NaN	0.048117	1	15185	15185		50.315	28.48	1	13308			24001	6858	13836	14238	19125	19125					0.056597558256498814
SFLSAGQANV	10	Unmodified	_SFLSAGQANV_					0	0	0			REV__nc|ENSG00000240935|Q15195|PLGLA	REV__nc|ENSG00000240935|Q15195|PLGLA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4999860433	1	993.499986	992.49271	1.9137	0.0019012	-3.4847	-0.003462	-1.571	-0.0015608	993.4938247233029	26.722	0.072411	26.722	26.65	26.722	0	258	73	1.4660252	0.042651296	1.4660252	297.6802	0	8.660461						114	4	2	NaN	NaN	NaN	0.62092	1	8311	8311		13.463	2.8581	1	18426	+		24002	13241	13837	14239	19126	19126					-0.003837069705241447
SFLSTYAGIM	10	Unmodified	_SFLSTYAGIM_					0	0	0			REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5285089796998	1	1089.52851	1088.52123	0.79151	0.00086237	5.3623	0.0058424	6.1538	0.0067048	1090.5371052457306	30.124	0.1448	30.118	29.997	30.142	-0.0064106	75	94	1.5741152	0.054773927	1.5725957	319.24158	0	11.108551						214	7	2	NaN	NaN	NaN	0.53991	1	12012	12012		17.799	3.7574	1	21759	+		24003	13614	13838	14240	19127	19127					-0.01948725385614125
SFLSTYAGIM	10	Unmodified						0	0	0			REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	REV__tr|U7T5G9|U7T5G9_FUSNUBranched-chainaminoacidtransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00057PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1089.52851	1088.52123	0.79151	0.00086237	5.3623	0.0058424	6.1538	0.0067048	1090.5371052457306	30.124	0.1448	30.118	29.997	30.142	-0.0064106	75	94	1.5741152	0.054773927	1.5725957	319.24158		11.108551	-0.0036914	-0.0025097	0.0010067	NaN	17.799	214	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21759	+		24004	13614	13838	14240							-0.01948725385614125
SFLTCKMSL	9	Unmodified	_SFLTCKMSL_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5107504255	1	1029.51075	1028.50347	1.4358	0.0014782	-3.8472	-0.0039607	-2.4114	-0.0024825	1029.5072799007578	37	0.14443	37	36.952	37.097	0	87	61	1.5670487	0.035339832	1.5670487	318.04062	0	7.1724243						258	7	3	NaN	NaN	NaN	0.31737	1	9713	9713		17.799	5.7503	1	29369	+		24005	13129	13839	14241	19128	19128					-0.009637639121137909
SFLTCKMSL	9	Unmodified						0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1029.51075	1028.50347	1.4358	0.0014782	-3.8472	-0.0039607	-2.4114	-0.0024825	1029.5072799007578	37	0.14443	37	36.952	37.097	0	87	61	1.5670487	0.035339832	1.5670487	318.04062		7.1724243	2.2715E-05	-0.00029506	0.00075972	NaN	17.799	258	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29369	+		24006	13129	13839	14241							-0.009637639121137909
SFLTCKMSL	9	Unmodified						0	0	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1029.51075	1028.50347	1.0646	0.0010961	-3.1874	-0.0032814	-2.1227	-0.0021854	1029.5082476475854	36.998	0.14424	37	36.952	37.096	0.0022507	87	61	1.5670487	0.035336137	1.5655292	318.04062		7.1716614	-2.2715E-05	0.00038422	-0.00075972	NaN	17.799	213	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22935	+		24007	13129	13839	14241							-0.009637639121137909
SFLVDSLVL	9	Unmodified	_SFLVDSLVL_					0	0	0		ENSG00000169840|ENST00000302945|GSX1	ENSG00000169840|ENST00000302945|GSX1	ENSG00000169840|ENST00000302945|GSX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	1.6869	0.0016744	-2.5261	-0.0025073	-0.83915	-0.00083291	992.5629392132992	32.177	0.12064	32.177	32.104	32.225	0	213	91	1.4926696	0.05326891	1.4926696	303.0943	0	10.816528						244	6	3	NaN	NaN	NaN	0.056143	1	8286	8286		44.302	0	1	40865			24008	4696	13840	14242	19129	19129					0.062881088715244
SFNPLTSLLQW	11	Unmodified	_SFNPLTSLLQW_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3455202674501	2	653.34552	1304.67649	0.60994	0.0003985	-3.5481	-0.0023182	-2.9382	-0.0019197	653.3420424548314	40.488	0.14427	40.488	40.44	40.585	0	1143	82	0.9332562	0.049524605	0.9332562	377.75253	0	20.04599						137	7	3	NaN	NaN	NaN	0.063104	1	18855	18855		46.512	18.017	1	9333.8			24009	5836	13841	14243	19130	19130					0.03633641740339044
SFNPLTSLLQW	11	Unmodified	_SFNPLTSLLQW_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3455202674501	2	653.34552	1304.67649	0.69393	0.00045337	-2.8459	-0.0018594	-2.152	-0.001406	653.8447625818901	40.438	0.096104	40.445	40.421	40.517	0.0067558	1140	49	0.93509084	0.029355824	0.9335714	378.49512	0	11.882294						86	5	2	NaN	NaN	NaN	0.14916	1	18021	18021		35.056	19.234	1	6966.8			24010	5836	13841	14243	19131	19131					0.03633641740339044
SFNVSWRYEE	10	Unmodified	_SFNVSWRYEE_					0	0	0		ADGRF5|p.S300F|1|0.1|ENSG00000069122|chr6:46879955-46879955|G/A|missense_variant	ADGRF5|p.S300F|1|0.1|ENSG00000069122|chr6:46879955-46879955|G/A|missense_variant	ADGRF5|p.S300F|1|0.1|ENSG00000069122|chr6:46879955-46879955|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.7989342156001	2	658.798934	1315.58332	1.6945	0.0011163	-11.23	-0.0073985	-9.5358	-0.0062822	658.7914062719692	19.876	0.19236	19.876	19.828	20.021	0	1077	43	0.9735726	0.025622725	0.9735726	394.0371	0	10.370361						287	9	4	NaN	NaN	NaN	0.69717	1	19034	19034		8.2448	1.2605	1	43098			24011	15	13842	14244	19132	19132					-0.06185282712908702
SFPAPGCC	8	Unmodified	_SFPAPGCC_					0	0	0		nc|ENSG00000141644|Q9UIS9-10|MBD1;MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-6|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.30075765	1	781.300758	780.293481	1.3115	0.0010247	-0.18884	-0.00014754	1.1227	0.00087714	781.3008434185907	37.504	0.1686	37.506	37.434	37.603	0.0028229	684	46	1.2116731	0.027068019	1.2101537	246.94788	0	5.5166473						136	8	2	NaN	NaN	NaN	0.84692	1	4408	4408		1.4396	0	1	17753			24012	7951	13843	14245	19133	19133					-0.10545381794429431
SFPARCHSEI	10	Unmodified	_SFPARCHSEI_					0	0	0		ENST00000590023.5_1_17:76613597-76626223:-|nuORF	ENST00000590023.5_1_17:76613597-76626223:-|nuORF	ENST00000590023.5_1_17:76613597-76626223:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7716652201001	2	573.771665	1145.52878	0.84559	0.00048518	-8.0848	-0.0046389	-7.2392	-0.0041537	573.7678860072494	31.525	0.072418	31.525	31.501	31.573	0	1239	79	0.87444305	0.047837377	0.87444305	354.4616	0	19.391205						178	4	3	NaN	NaN	NaN	0.69717	1	14635	14635		8.2448	0.70444	1	13143			24013	7724	13844	14246	19134	19134					-0.03816573065319062
SFPARCHSEI	10	Unmodified						0	0	0		ENST00000590023.5_1_17:76613597-76626223:-|nuORF	ENST00000590023.5_1_17:76613597-76626223:-|nuORF	ENST00000590023.5_1_17:76613597-76626223:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	573.771665	1145.52878	0.4728	0.00027128	-8.1012	-0.0046482	-7.6284	-0.004377	573.7662723603421	31.524	0.14481	31.519	31.447	31.592	-0.0044174	1236	79	0.876284	0.04783213	0.8747646	355.20786		19.3891	-0.0027309	-9.6929E-06	0.00016078	NaN	8.2448	180	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14230			24014	7724	13844	14246							-0.03816573065319062
SFPFSVSNG	9	Unmodified	_SFPFSVSNG_					0	0	0			REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.4363231540002	1	941.436323	940.429047	0.66916	0.00062998	4.6933	0.0044185	5.3625	0.0050485	941.4402471585929	35.241	0.21717	35.241	35.192	35.41	0	318	97	1.4304334	0.05704403	1.4304334	290.6733	0	11.591705						401	10	3	NaN	NaN	NaN	0.12328	1	6825	6825		32.453	0.89171	1	61831	+		24015	12557	13845	14247	19135	19135					-0.04355067407607294
SFPFSVSNG	9	Unmodified	_SFPFSVSNG_					0	0	0			REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.4363231540002	1	941.436323	940.429047	1.2953	0.0012194	4.1259	0.0038843	5.4212	0.0051037	941.4403947276029	35.239	0.169	35.239	35.191	35.36	-4.1962E-05	318	88	1.4304334	0.051687837	1.428914	290.6733	0	10.503296						402	8	3	NaN	NaN	NaN	0.03618	1	6686	6686		52.78	2.9468	1	57506	+		24016	12557	13845	14247	19136	19136					-0.04355067407607294
SFPFSVSNG	9	Unmodified						0	0	0			REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	941.436323	940.429047	0.66916	0.00062998	4.6933	0.0044185	5.3625	0.0050485	941.4402471585929	35.241	0.21717	35.241	35.192	35.41	0	318	97	1.4304334	0.05704403	1.4304334	290.6733		11.591705	0.00072452	0.00023795	0.00075972	NaN	52.78	401	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61831	+		24017	12557	13845	14247							-0.04355067407607294
SFPFSVSNG	9	Unmodified						0	0	0			REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	REV__ENST00000511309.5_1_5:176730986-176733129:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	941.436323	940.429047	1.2953	0.0012194	4.1259	0.0038843	5.4212	0.0051037	941.4403947276029	35.239	0.169	35.239	35.191	35.36	-4.1962E-05	318	88	1.4304334	0.051687837	1.428914	290.6733		10.503296	-0.00072452	-0.00029625	-0.00075972	NaN	52.78	402	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57506	+		24018	12557	13845	14247							-0.04355067407607294
SFPHFRVLL	9	Unmodified	_SFPHFRVLL_					0	0	0			REV__nc|ENSG00000203760|Q5EE01-2|CENPW	REV__nc|ENSG00000203760|Q5EE01-2|CENPW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.3216512406501	2	558.321651	1114.62875	0.96453	0.00053852	-5.3849	-0.0030065	-4.4203	-0.002468	558.319129636551	35.771	0.072342	35.771	35.723	35.795	0	1197	61	0.9001988	0.036770105	0.9001988	365.02216	0	14.909943						111	4	2	NaN	NaN	NaN	0.42773	1	13474	13474		12.588	0	1	11093	+		24019	13216	13846	14248	19137	19137					0.07602032330805741
SFPHFRVLL	9	Unmodified						0	0	0			REV__nc|ENSG00000203760|Q5EE01-2|CENPW	REV__nc|ENSG00000203760|Q5EE01-2|CENPW	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.321651	1114.62875	0.96453	0.00053852	-5.3849	-0.0030065	-4.4203	-0.002468	558.319129636551	35.771	0.072342	35.771	35.723	35.795	0	1197	61	0.9001988	0.036770105	0.9001988	365.02216		14.909943	0.012553	-0.0011136	-0.0010784	NaN	12.588	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11093	+		24020	13216	13846	14248							0.07602032330805741
SFPLFFQLS	9	Unmodified	_SFPLFFQLS_					0	0	0			REV__XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	REV__XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.28694275605	2	543.286943	1084.55933	1.2511	0.00067972	4.3429	0.0023594	5.594	0.0030391	543.2875953185718	26.673	0.072409	26.663	26.614	26.687	-0.010643	1269	85	0.8560222	0.051578403	0.85450274	347.22644	0	20.92163						120	4	3	NaN	NaN	NaN	0.60736	1	11860	11860		5.1889	0.77579	1	10549	+		24021	8639	13847	14249	19138	19138					0.020435285913663392
SFPRLFVL	8	Unmodified	_SFPRLFVL_					0	0	0			REV__PREX1|p.D674E|1|0.27|ENSG00000124126|chr20:48657141-48657141|G/C|missense_variant	REV__PREX1|p.D674E|1|0.27|ENSG00000124126|chr20:48657141-48657141|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5771141523002	1	978.577114	977.569838	1.5168	0.0014843	-11.352	-0.011108	-9.8348	-0.0096241	978.5654904125652	35.07	0.096516	35.07	35.022	35.119	-4.5776E-05	180	82	1.5121819	0.04788363	1.5106624	307.11667	0	9.724945						147	5	2	NaN	NaN	NaN	0.65075	1	7668	7668		22.126	3.008	1	11141	+		24022	9369	13848	14250	19139	19139					0.08015556036468752
SFQDRFRE	8	Unmodified	_SFQDRFRE_					0	0	0		ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.7621547788001	2	542.762155	1083.50976	1.8117	0.00098331	-7.1452	-0.0038781	-5.3335	-0.0028948	542.7572457768597	16.973	0.095905	16.973	16.925	17.021	0	1260	34	0.8615505	0.020266235	0.8615505	349.47318	0	8.220642						58	5	2	NaN	NaN	NaN	0.80191	1	12112	12112		8.962	1.9776	1	4537.2			24023	7364	13849	14251	19140	19140					-0.028657863647140402
SFQDRFRE	8	Unmodified						0	0	0		ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	542.762155	1083.50976	2.6819	0.0014557	-8.6198	-0.0046785	-5.9379	-0.0032229	542.7571418314111	16.97	0.047926	16.957	16.933	16.981	-0.013294	1257	37	0.86339295	0.022109807	0.8618735	350.22052		8.968445	-0.0083064	-0.00057059	0.00016147	NaN	8.962	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546.6			24024	7364	13849	14251							-0.028657863647140402
SFSEGFYFAFI	11	Unmodified	_SFSEGFYFAFI_					0	0	0		nc|ENSG00000095981|Q96T55-5|KCNK16;ENSG00000095981|ENST00000437525|KCNK16;nc|ENSG00000095981|Q96T55|KCNK16;nc|ENSG00000095981|Q96T55-4|KCNK16	nc|ENSG00000095981|Q96T55-5|KCNK16	nc|ENSG00000095981|Q96T55-5|KCNK16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.87288989900003	3	438.87289	1313.59684	0.95902	0.00042089	-4.7421	-0.0020812	-3.7831	-0.0016603	439.2051174200358	29.063	0.12063	29.063	29.039	29.16	0	1401	34	0.77473325	0.02036959	0.77473325	470.34396	0	12.366486						136	6	4	NaN	NaN	NaN	0.74155	1	19008	19008		1.8502	0.16965	1	12137			24025	1134	13850	14252	19141	19141					-0.047414249336725334
SFSHDFAA	8	Unmodified	_SFSHDFAA_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.19304237085	2	441.193042	880.371532	1.0481	0.00046243	-5.3613	-0.0023654	-4.3132	-0.001903	441.19073057152053	35.094	0.12066	35.094	34.998	35.119	-4.5776E-05	1416	40	0.76547134	0.024083614	0.7639519	311.39813	0	9.797333						83	6	2	NaN	NaN	NaN	0.84207	1	5681	5681		3.5732	0.41988	1	6318.7	+		24026	8999	13851	14253	19142	19142					-0.07343909613189226
SFSHDFAA	8	Unmodified						0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	441.193042	880.371532	0.33188	0.00014642	-6.4429	-0.0028426	-6.111	-0.0026961	441.1904454508529	35.072	0.16888	35.072	34.975	35.144	0	1422	52	0.7617651	0.031500757	0.7617651	309.89044		12.814697	-0.011326	-0.00029747	-0.0010934	NaN	3.5732	149	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13468	+		24027	8999	13851	14253							-0.07343909613189226
SFSHDFAA	8	Unmodified						0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	441.193042	880.371532	1.0481	0.00046243	-5.3613	-0.0023654	-4.3132	-0.001903	441.19073057152053	35.094	0.12066	35.094	34.998	35.119	-4.5776E-05	1416	40	0.76547134	0.024083614	0.7639519	311.39813		9.797333	0.011326	0.00065689	0.0010934	NaN	3.5732	83	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6318.7	+		24028	8999	13851	14253							-0.07343909613189226
SFSLSFGFLWF	11	Unmodified	_SFSLSFGFLWF_					0	0	0		ENST00000220592.9_2_8:141538766-141538952:-|nuORF	ENST00000220592.9_2_8:141538766-141538952:-|nuORF	ENST00000220592.9_2_8:141538766-141538952:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.5570132061667	3	446.557013	1336.64921	3.1961	0.0014272	-9.2644	-0.0041371	-6.0683	-0.0027098	446.88705401352416	40.366	0.024052	40.373	40.373	40.397	0.0067558	1566	22	0.6725752	0.013040066	0.6710558	408.25018	0	7.915283						22	2	2	NaN	NaN	NaN	0.77797	1	18492	18492		0.1369	0	1	892.78			24029	6234	13852	14254	19143	19143					-0.005648418000419042
SFSMIFSGFS	10	Unmodified	_SFSMIFSGFS_					0	0	0		tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.4972088513	1	1109.49721	1108.48993	1.1431	0.0012683	0.6432	0.00071362	1.7863	0.0019819	1109.4981813752986	31.646	0.04829	31.646	31.621	31.67	0	69	73	1.5776473	0.04239881	1.5776473	319.88577	0	8.596863						120	3	3	NaN	NaN	NaN	0.44258	1	13214	13214		21.835	7.7934	1	10266			24030	14010	13853	14255	19144	19144					-0.05997298419697472
SFSMIFSGFS	10	Unmodified						0	0	0		tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	tr|U7T8F3|U7T8F3_FUSNUMacrolidetransportsystemATP-binding/permeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00035PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1109.49721	1108.48993	0.44064	0.00048889	1.7753	0.0019697	2.216	0.0024586	1109.498532163433	31.645	0.072395	31.64	31.616	31.688	-0.0044174	69	76	1.5776473	0.044172525	1.5761279	319.88577		8.956451	-0.0027299	0.00071478	-0.00075972	NaN	21.835	122	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11020			24031	14010	13853	14255							-0.05997298419697472
SFSNRMFRP	9	Unmodified	_SFSNRMFRP_					0	0	0			REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2822001166501	2	571.2822	1140.54985	1.999	0.001142	7.6819	0.0043885	9.6809	0.0055305	571.2875376705138	25.395	0.16889	25.395	25.298	25.467	0	1218	73	0.8873258	0.0441432	0.8873258	359.70233	0	17.894684						177	8	3	NaN	NaN	NaN	0.56671	1	14464	14464		6.8632	1.6743	1	36752	+		24032	12212	13854	14256	19145	19145					-0.014805629657985264
SFSNRMFRP	9	Unmodified						0	0	0			REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.2822	1140.54985	1.999	0.001142	7.6819	0.0043885	9.6809	0.0055305	571.2875376705138	25.395	0.16889	25.395	25.298	25.467	0	1218	73	0.8873258	0.0441432	0.8873258	359.70233		17.894684	-0.0059129	-0.00049917	-0.00016008	NaN	6.8632	177	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36752	+		24033	12212	13854	14256							-0.014805629657985264
SFSNRMFRP	9	Unmodified						0	0	0			REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.2822	1140.54985	1.5593	0.00089077	8.491	0.0048508	10.05	0.0057416	571.2879722489731	25.419	0.072388	25.407	25.382	25.455	-0.012011	1215	67	0.8891654	0.04046464	0.88764596	360.44806		16.403473	0.0059129	0.00042533	0.00016008	NaN	6.8632	132	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30253	+		24034	12212	13854	14256							-0.014805629657985264
SFSPEQFCS	9	Unmodified	_SFSPEQFCS_					0	0	0			REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2105748095	2	516.210575	1030.4066	2.0704	0.0010688	0.91189	0.00047073	2.9823	0.0015395	516.2110283240272	17.261	0.14382	17.261	17.213	17.357	0	1356	58	0.8024889	0.03512293	0.8024889	325.72635	0	14.256226						119	7	2	NaN	NaN	NaN	0.63698	1	9781	9781		3.9685	0.81517	1	8705.1	+		24035	13201	13855	14257	19146	19146					-0.10739034867538066
SFSPEQFCS	9	Unmodified						0	0	0			REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.210575	1030.4066	2.0704	0.0010688	0.91189	0.00047073	2.9823	0.0015395	516.2110283240272	17.261	0.14382	17.261	17.213	17.357	0	1356	58	0.8024889	0.03512293	0.8024889	325.72635		14.256226	0.0085203	-0.00067783	0.00075972	NaN	3.9685	119	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8705.1	+		24036	13201	13855	14257							-0.10739034867538066
SFSPEQFCS	9	Unmodified						0	0	0			REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	REV__nc|ENSG00000188163|Q6J272-2|CIMIP2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.210575	1030.4066	1.6923	0.00087357	2.0428	0.0010545	3.7351	0.0019281	516.211772852013	17.258	0.16796	17.244	17.196	17.364	-0.013567	1356	70	0.8024889	0.042508066	0.8009695	325.72635		17.253784	-0.0085203	0.00048977	-0.00075972	NaN	3.9685	123	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9375.6	+		24037	13201	13855	14257							-0.10739034867538066
SFSRSFRRYER	11	Unmodified	_SFSRSFRRYER_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.5918909650334	3	497.591891	1489.75384	1.3486	0.00067106	-6.5994	-0.0032838	-5.2508	-0.0026127	497.58868615446204	24.237	0.04826	24.237	24.213	24.261	0	1416	70	0.76547134	0.04263258	0.76547134	464.1494	0	25.850586						138	3	4	NaN	NaN	NaN	0.76796	1	20547	20547		2.3495	0.31368	1	13612			24038	6964	13856	14258	19147	19147					0.028556727292198048
SFSRSFRRYER	11	Unmodified						0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	497.591891	1489.75384	1.0207	0.0005079	-5.6671	-0.0028199	-4.6464	-0.002312	497.5885564592564	24.454	0.12067	24.441	24.344	24.465	-0.012749	1413	43	0.7673241	0.025940418	0.76580465	465.27286		15.7291565	0.10207	0.00079062	0.00016667	NaN	2.3495	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14636			24039	6964	13856	14258							0.028556727292198048
SFSSPVGLF	9	Unmodified	_SFSSPVGLF_					0	0	0			REV__ENST00000534976.5_1_12:121784404-121784479:-|nuORF	REV__ENST00000534976.5_1_12:121784404-121784479:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4774596872	1	940.47746	939.470183	1.4498	0.0013635	0.15768	0.00014829	1.6075	0.0015118	940.4765572453415	29.715	0.072388	29.715	29.691	29.763	0	174	43	1.5157272	0.024814129	1.5157272	308.0101	0	5.04245						104	4	3	NaN	NaN	NaN	0.094712	1	6808	6808		36.586	6.9881	1	10683	+		24040	12672	13857	14259	19148	19148					-0.001973063681475651
SFSSPVGLF	9	Unmodified						0	0	0			REV__ENST00000534976.5_1_12:121784404-121784479:-|nuORF	REV__ENST00000534976.5_1_12:121784404-121784479:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	940.47746	939.470183	1.4498	0.0013635	0.15768	0.00014829	1.6075	0.0015118	940.4765572453415	29.715	0.072388	29.715	29.691	29.763	0	174	43	1.5157272	0.024814129	1.5157272	308.0101		5.04245	0.0039755	0.00034125	-0.00012645	NaN	36.586	104	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10683	+		24041	12672	13857	14259							-0.001973063681475651
SFSTFMDNYS	10	Unmodified	_SFSTFMDNYS_					0	0	0		ENSG00000153234|ENST00000339562|NR4A2;NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	ENSG00000153234|ENST00000339562|NR4A2	ENSG00000153234|ENST00000339562|NR4A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7396963897	2	599.739696	1197.46484	0.69405	0.00041625	-0.67827	-0.00040678	0.015787	9.4679E-06	600.2399888146853	34.154	0.19301	34.153	34.129	34.322	-0.0012474	1194	52	0.902037	0.031249523	0.9005176	365.45828	0	12.660675						147	9	2	NaN	NaN	NaN	0.65442	1	15724	15724		11.17	0.81017	1	16288			24042	3803	13858	14260	19149	19149					-0.12599398012935126
SFSTMIWGL	9	Unmodified	_SFSTMIWGL_					0	0	0		tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	tr|U7SLP3|U7SLP3_FUSNUV-typeATPsynthasesubunitIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02120PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.25732803685	2	521.257328	1040.5001	2.0187	0.0010523	4.1638	0.0021704	6.1825	0.0032227	521.2593503997382	18.796	0.096043	18.796	18.748	18.844	0	1275	73	0.85233563	0.044262707	0.85233563	345.91464	0	17.963715						162	5	3	NaN	NaN	NaN	0.20577	1	10232	10232		24.961	3.126	1	23484			24043	13765	13859	14261	19150	19150					-0.018526906944543953
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2692813191501	2	541.269281	1080.52401	1.8016	0.00097513	-3.0339	-0.0016422	-1.2323	-0.00066703	541.268115724172	15.438	0.21619	15.438	15.414	15.63	0	1281	52	0.84864825	0.031340897	0.84864825	344.25153	0	12.713318						305	10	3	NaN	NaN	NaN	0.012018	1	11995	11995		86.792	31.201	1	76445			24044	2911	13860	14262	19151	19151					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.18194636830003	3	361.181946	1080.52401	1.6896	0.00061025	-0.94622	-0.00034176	0.74337	0.00026849	361.18137301092565	15.438	0.19219	15.438	15.414	15.606	0	1461	40	0.7376554	0.024125457	0.7376554	448.83615	0	14.679443						249	9	4	NaN	NaN	NaN	0.070055	1	11996	11996		29.706	11.473	1	32174			24045	2911	13860	14262	19152	19152					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2692813191501	2	541.269281	1080.52401	1.8008	0.00097471	-2.0503	-0.0011098	-0.24953	-0.00013506	541.2682983551863	15.532	0.23981	15.52	15.448	15.688	-0.012202	1278	58	0.85049206	0.035031855	0.8489726	344.99945	0	14.210541						368	11	3	NaN	NaN	NaN	0.064504	1	11681	11681		40.957	3.6545	1	84850			24046	2911	13860	14262	19153	19153					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	361.18194636830003	3	361.181946	1080.52401	1.9863	0.0007174	-1.9641	-0.00070941	0.022134	7.9944E-06	361.18108261044944	15.532	0.26378	15.52	15.448	15.712	-0.012202	1461	46	0.7376554	0.027840078	0.73613596	448.83615	0	16.939636						259	12	4	NaN	NaN	NaN	0.12866	1	11682	11682		23.177	6.3183	1	37364			24047	2911	13860	14262	19154	19154					-0.01303133936426093
SFTAAFFGRWY	11	Unmodified	_SFTAAFFGRWY_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.8247550356001	2	676.824755	1351.63496	0.54253	0.00036719	5.9289	0.0040128	6.4714	0.00438	676.8292634327278	32.2	0.16891	32.196	32.148	32.316	-0.0037613	1047	73	0.99186665	0.043867886	0.9903472	401.32996	0	17.749878						299	8	4	NaN	NaN	NaN	0.59385	1	18686	18686		14.425	1.4222	1	35205	+		24048	11045	13861	14263	19155	19155					-0.026794942283459022
SFTHSSTLLQ	10	Unmodified	_SFTHSSTLLQ_					0	0	0		ENSG00000152454|ENST00000282308|ZNF256;nc|ENSG00000152454|Q9Y2P7-2|ZNF256;ENST00000598928.1_1_19:58452294-58458975:-|nuORF	ENSG00000152454|ENST00000282308|ZNF256	ENSG00000152454|ENST00000282308|ZNF256	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.7852955241001	2	560.785296	1119.55604	1.7021	0.00095451	2.2581	0.0012663	3.9601	0.0022208	561.286421844742	28.484	0.16897	28.484	28.412	28.581	0	1227	67	0.88180584	0.040490866	0.88180584	357.5447	0	16.417786						207	8	2	NaN	NaN	NaN	0.65442	1	13651	13651		11.17	0.56537	1	27293			24049	3774	13862	14264	19156	19156					0.0010423374671972852
SFTYSATLE	9	Unmodified	_SFTYSATLE_					0	0	0		ZNF700|p.Q266E|1|0.15|ENSG00000196757|chr19:11948820-11948820|C/G|missense_variant	ZNF700|p.Q266E|1|0.15|ENSG00000196757|chr19:11948820-11948820|C/G|missense_variant	ZNF700|p.Q266E|1|0.15|ENSG00000196757|chr19:11948820-11948820|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.4727682398	1	1018.47277	1017.46549	1.5046	0.0015324	0.59622	0.00060724	2.1008	0.0021396	1018.4694099022597	29.835	0.096514	29.828	29.828	29.924	-0.0070667	234	79	1.4802408	0.046156645	1.4787214	300.46564	0	9.36908						149	5	3	NaN	NaN	NaN	0.51576	1	9079	9079		8.962	0.67169	1	14816			24050	14030	13863	14265	19157	19157					-0.04254235301573317
SFVLILTEI	9	Unmodified	_SFVLILTEI_					0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.6132248871	1	1034.61322	1033.60595	1.0317	0.0010674	3.3096	0.0034242	4.3413	0.0044916	1034.6168183450743	34.154	0.096581	34.153	34.129	34.225	-0.0012474	69	76	1.5776473	0.044167757	1.5761279	320.17072	0	8.963501						162	5	3	NaN	NaN	NaN	0.39244	1	9739	9739		14.042	0.30454	1	16450			24051	7400	13864	14266	19158	19158					0.09048968422666803
SFVLILTEI	9	Unmodified						0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.61322	1033.60595	1.1962	0.0012376	3.682	0.0038094	4.8782	0.005047	1034.617341009705	34.155	0.072315	34.155	34.131	34.203	0	75	88	1.5741152	0.05124557	1.5741152	319.4539		10.399872	0.0012279	0.00013429	-0.0010063	NaN	14.042	149	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16918			24052	7400	13864	14266							0.09048968422666803
SFVLQSSFL	9	Unmodified	_SFVLQSSFL_					0	0	0			REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.5458736034	1	1027.54587	1026.5386	0.78895	0.00081068	-1.0486	-0.0010775	-0.25963	-0.00026678	1027.5461820746734	31.524	0.096552	31.519	31.423	31.519	-0.0044174	162	61	1.5228153	0.035429835	1.5212959	309.07104	0	7.190857						121	5	3	NaN	NaN	NaN	0.060816	1	9439	9439		42.318	7.8788	1	14717	+		24053	11909	13865	14267	19159	19159					0.026389382117031346
SFVLQSSFL	9	Unmodified						0	0	0			REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1027.54587	1026.5386	1.2877	0.0013232	-2.2976	-0.0023609	-1.0099	-0.0010377	1027.5420331740638	31.597	0.12068	31.597	31.573	31.694	0	153	103	1.5281296	0.06017971	1.5281296	310.14963		12.214081	0.038949	-0.00074497	0.0034168	NaN	42.318	307	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36439	+		24054	11909	13865	14267							0.026389382117031346
SFVLQSSFL	9	Unmodified						0	0	0			REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	REV__ENST00000372383.8_1_X:107018686-107018965:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1027.54587	1026.5386	0.78895	0.00081068	-1.0486	-0.0010775	-0.25963	-0.00026678	1027.5461820746734	31.524	0.096552	31.519	31.423	31.519	-0.0044174	162	61	1.5228153	0.035429835	1.5212959	309.07104		7.190857	-0.038949	0.00053846	-0.0034168	NaN	42.318	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14717	+		24055	11909	13865	14267							0.026389382117031346
SFVNVQAYLAY	11	Unmodified	_SFVNVQAYLAY_					0	0	0			REV__ENST00000483945.1_1_3:100091326-100092489:-|nuORF	REV__ENST00000483945.1_1_3:100091326-100092489:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8244206846001	2	637.824421	1273.63429	4.1036	0.0026174	-1.3303	-0.00084852	2.7733	0.0017689	637.8237385613801	18.098	0.024002	18.084	18.06	18.084	-0.013786	1164	22	0.9204082	0.012853563	0.91888875	372.64716	0	5.2040405						22	2	2	NaN	NaN	NaN	0.73455	1	17488	17488		5.1889	0.45981	1	1337.9	+		24056	12405	13866	14268	19160	19160					0.008416663319621875
SFVSGFTISMI	11	Unmodified	_SFVSGFTISMI_					0	0	0		ENSG00000182083|ENST00000319423|OR6B2;ENSG00000178586|ENST00000641019|OR6B3	ENSG00000182083|ENST00000319423|OR6B2	ENSG00000182083|ENST00000319423|OR6B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8020996812501	2	594.8021	1187.58965	1.1863	0.0007056	0.49749	0.00029591	1.6838	0.0010015	594.8005944262867	23.947	0.12063	23.947	23.923	24.044	0	1170	49	0.91673553	0.029377997	0.91673553	371.44855	0	11.903564						129	6	4	NaN	NaN	NaN	0.37016	1	16082	16082		23.118	2.6689	1	16073			24057	5115	13867	14269	19161	19161					0.0033551919425462984
SFVSGFTISMI	11	Unmodified						0	0	0		ENSG00000182083|ENST00000319423|OR6B2;ENSG00000178586|ENST00000641019|OR6B3	ENSG00000182083|ENST00000319423|OR6B2	ENSG00000182083|ENST00000319423|OR6B2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.8021	1187.58965	1.1046	0.00065703	-1.8038	-0.0010729	-0.69922	-0.0004159	594.8013479140847	23.995	0.14474	23.982	23.91	24.054	-0.013048	1173	55	0.91489893	0.03305024	0.9133795	370.70438		13.39151	0.017499	-0.001316	-0.001678	NaN	23.118	182	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24935			24058	5115	13867	14269							0.0033551919425462984
SFVWMPAL	8	Unmodified	_SFVWMPAL_					0	0	0		ENSG00000112514|ENST00000488034|CUTA;nc|ENSG00000112514|O60888-2|CUTA	ENSG00000112514|ENST00000488034|CUTA	ENSG00000112514|ENST00000488034|CUTA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4804365751	1	950.480437	949.47316	1.4464	0.0013747	2.6159	0.0024864	4.0623	0.0038611	950.482920854373	24.502	0.096487	24.489	24.465	24.561	-0.012747	330	49	1.4233059	0.028512955	1.4217864	289.1852	0	5.793213						127	5	3	NaN	NaN	NaN	0.72043	1	6942	6942		17.78	1.1962	1	10094			24059	1875	13868	14270	19162	19162					-0.0035975451498870825
SFVYNHYLF	9	Unmodified	_SFVYNHYLF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2874740723	2	595.287474	1188.5604	1.9088	0.0011363	1.737	0.001034	3.6458	0.0021703	595.2870893457551	26.384	0.24133	26.384	26.36	26.601	0	1149	103	0.92958635	0.062441766	0.92958635	376.65195	0	25.300293						502	11	4	NaN	NaN	NaN	0.16171	1	16108	16108		27.789	0	1	225480			24060	5689;5749	13869	14271	19163	19163					-0.02634257039721888
SFYNVVKLNRV	11	Unmodified	_SFYNVVKLNRV_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.88006157655	2	669.880062	1337.74557	1.7683	0.0011846	-9.1103	-0.0061028	-7.342	-0.0049182	669.873785934464	25.37	0.072376	25.358	25.334	25.407	-0.012011	933	127	1.0612047	0.07639825	1.0596852	429.43076	0	30.915588						296	4	4	NaN	NaN	NaN	0.77918	1	18513	18513		0.38509	0.25017	1	32898	+		24061	10708	13870	14272	19164	19164					0.09020725759887682
SFYNVVKLNRV	11	Unmodified						0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	669.880062	1337.74557	1.7969	0.0012037	-9.8883	-0.006624	-8.0915	-0.0054203	669.8731712129295	25.346	0.0965	25.346	25.322	25.419	0	936	124	1.0593836	0.07458329	1.0593836	428.69385		30.181122	-0.0059291	-0.00054482	-0.00015081	NaN	0.38509	326	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35225	+		24062	10708	13870	14272							0.09020725759887682
SFYNVVKLNRV	11	Unmodified						0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	669.880062	1337.74557	1.7683	0.0011846	-9.1103	-0.0061028	-7.342	-0.0049182	669.873785934464	25.37	0.072376	25.358	25.334	25.407	-0.012011	933	127	1.0612047	0.07639825	1.0596852	429.43076		30.915588	0.0059291	0.00049756	0.00015081	NaN	0.38509	296	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32898	+		24063	10708	13870	14272							0.09020725759887682
SFYPRNIILTW	11	Unmodified	_SFYPRNIILTW_					0	0	0		ENSG00000204520|ENST00000449934|MICA	ENSG00000204520|ENST00000449934|MICA	ENSG00000204520|ENST00000449934|MICA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.38243709	2	705.382437	1408.75032	1.4439	0.0010185	-6.1003	-0.0043031	-4.6564	-0.0032845	705.3791947163152	30.101	0.12072	30.101	30.053	30.173	0	1044	46	0.99369496	0.027427733	0.99369496	401.90472	0	11.093292						190	6	4	NaN	NaN	NaN	0.066897	1	20139	20139		45.55	29.728	1	20034			24064	5889	13871	14273	19165	19165					0.06229609902652555
SFYPRNIILTW	11	Unmodified						0	0	0		ENSG00000204520|ENST00000449934|MICA	ENSG00000204520|ENST00000449934|MICA	ENSG00000204520|ENST00000449934|MICA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	705.382437	1408.75032	0.71061	0.00050125	-3.5818	-0.0025265	-2.8711	-0.0020253	705.379804766321	30.124	0.2172	30.118	30.021	30.238	-0.0064106	1044	40	0.99369496	0.023765624	0.9921755	401.90472		9.612122	0.0083722	0.0016393	-0.00075972	NaN	45.55	187	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16540			24065	5889	13871	14273							0.06229609902652555
SFYPRNITLTW	11	Unmodified	_SFYPRNITLTW_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.36424433685	2	699.364244	1396.71394	0.66483	0.00046496	-2.9051	-0.0020317	-2.2403	-0.0015668	699.3631808943428	27.856	0.19312	27.846	27.822	28.015	-0.009552	1065	49	0.9808926	0.029276788	0.97937316	396.75995	0	11.842133						180	9	3	NaN	NaN	NaN	0.6011	1	19099	19099		13.949	6.3612	1	17538			24066	5888	13872	14274	19166	19166					0.03144733005933631
SGAAAMAG	8	Unmodified	_SGAAAMAG_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.2817367674	1	635.281737	634.27446	1.8381	0.0011677	7.1005	0.0045108	8.9386	0.0056785	635.286156770355	29.062	0.048239	29.055	29.007	29.055	-0.0077209	1140	34	0.93509084	0.020183206	0.9335714	191.33496	0	4.129822						45	3	2	NaN	NaN	NaN	0.84692	1	1493	1493		1.4396	0	1	4033.3	+		24067	10074	13873	14275	19167	19167					-0.0573059509383711
SGAAHGPA	8	Unmodified	_SGAAHGPA_					0	0	0			REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.16154527719993	2	334.161545	666.308538	0.97978	0.00032741	-6.6768	-0.0022311	-5.6971	-0.0019037	334.1600005604261	33.48	0.14466	33.48	33.48	33.624	0	1509	64	0.70793515	0.039043844	0.70793515	289.4078	0	15.961334						173	7	3	NaN	NaN	NaN	0.84692	1	2480	2480		1.4396	0	1	21595	+		24068	11883	13874	14276	19168	19168					-0.03796430610589141
SGAAHGPA	8	Unmodified						0	0	0			REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.161545	666.308538	0.97978	0.00032741	-6.6768	-0.0022311	-5.6971	-0.0019037	334.1600005604261	33.48	0.14466	33.48	33.48	33.624	0	1509	64	0.70793515	0.039043844	0.70793515	289.4078		15.961334	0	0	0	NaN	1.4396	173	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21595	+		24069	11883	13874	14276							-0.03796430610589141
SGAAVGIF	8	Unmodified	_SGAAVGIF_					0	0	0			REV__ENSG00000198099|ENST00000265512|ADH4	REV__ENSG00000198099|ENST00000265512|ADH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3879163984001	1	721.387916	720.38064	1.0437	0.00075293	5.7904	0.0041771	6.8341	0.00493	721.3920374878594	30.584	0.19307	30.584	30.535	30.728	0	639	73	1.2387238	0.04325092	1.2387238	252.82358	0	8.82753						241	9	3	NaN	NaN	NaN	0.76633	1	3596	3596		13.737	0	1	35174	+		24070	11168	13875	14277	19169	19169					0.009264837431373962
SGAAVGIF	8	Unmodified						0	0	0			REV__ENSG00000198099|ENST00000265512|ADH4	REV__ENSG00000198099|ENST00000265512|ADH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	721.387916	720.38064	1.0437	0.00075293	5.7904	0.0041771	6.8341	0.00493	721.3920374878594	30.584	0.19307	30.584	30.535	30.728	0	639	73	1.2387238	0.04325092	1.2387238	252.82358		8.82753	0.0033829	0.00049283	-0.0001412	NaN	13.737	241	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35174	+		24071	11168	13875	14277							0.009264837431373962
SGAAVGIF	8	Unmodified						0	0	0			REV__ENSG00000198099|ENST00000265512|ADH4	REV__ENSG00000198099|ENST00000265512|ADH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.387916	720.38064	0.95503	0.00068895	4.153	0.0029959	5.108	0.0036849	721.3909359789207	30.583	0.19301	30.577	30.529	30.722	-0.0057545	636	70	1.2405256	0.041433334	1.2390062	253.19135		8.456528	-0.0033829	-0.00068837	0.0001412	NaN	13.737	256	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38441	+		24072	11168	13875	14277							0.009264837431373962
SGAGKSLF	8	Unmodified	_SGAGKSLF_					0	0	0		tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	tr|U7STX6|U7STX6_FUSNUCobyricacidsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobQPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	766.4093801220001	1	766.40938	765.402104	1.3602	0.0010425	5.0726	0.0038877	6.4328	0.0049302	766.413637809546	32.659	0.14479	32.659	32.635	32.78	0	555	61	1.2891023	0.035927057	1.2891023	262.81683	0	7.324646						210	7	3	NaN	NaN	NaN	0.78967	1	4288	4288		10.605	0	1	21847			24073	13869	13876	14278	19170	19170					0.010018687718570618
SGAGVPAT	8	Unmodified	_SGAGVPAT_					0	0	0		ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3358808279	1	659.335881	658.328604	1.5059	0.00099291	0.31154	0.00020541	1.8175	0.0011983	659.3357040551671	55.893	0.072067	55.893	55.869	55.941	0	627	79	1.24593	0.046800017	1.24593	254.7413	0	9.568695						120	4	2	NaN	NaN	NaN	0.84727	1	2237	2237		1.2418	0	1	7252.3			24074	1277	13877	14279	19171	19171					-0.014226796706225286
SGAGVPAT	8	Unmodified						0	0	0		ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	ENSG00000100815|ENST00000267622|TRIP11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.335881	658.328604	0.17365	0.00011449	1.7333	0.0011428	1.907	0.0012573	659.3359206785432	55.891	0.048016	55.89	55.866	55.914	-0.00059128	618	82	1.2513325	0.0486027	1.2498131	255.84592		9.937256	-0.001427	0.00054168	0.0019416	NaN	1.2418	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3998.8			24075	1277	13877	14279							-0.014226796706225286
SGAGYGVG	8	Unmodified	_SGAGYGVG_					0	0	0		ENST00000571657.5_1_17:19281216-19286541:+|nuORF;ENST00000570306.5_1_17:19284999-19286541:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.15592858305	2	334.155929	666.297304	1.8946	0.00063308	1.6449	0.00054966	3.5395	0.0011827	334.1573331964079	37.504	0.26482	37.506	37.41	37.675	0.0028229	1527	118	0.69677675	0.072541595	0.6952573	284.84625	0	29.655396						984	12	5	NaN	NaN	NaN	0.84692	1	2388	2388		1.4396	0	1	314610			24076	4488	13878	14280	19172	19172					-0.049192527047011936
SGAGYGVG	8	Unmodified						0	0	0		ENST00000571657.5_1_17:19281216-19286541:+|nuORF;ENST00000570306.5_1_17:19284999-19286541:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.155929	666.297304	1.482	0.00049523	1.8892	0.0006313	3.3712	0.0011265	334.157609495875	37.506	0.313	37.506	37.386	37.699	0	1530	109	0.6949163	0.06698692	0.6949163	284.0857		27.384644	-0.00015833	8.9832E-05	-0.0001705	NaN	1.4396	1140	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344180			24077	4488	13878	14280							-0.049192527047011936
SGALGLGVRW	10	Unmodified	_SGALGLGVRW_					0	0	0			REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.2878084233	2	508.287808	1014.56106	1.0827	0.00055035	-1.1859	-0.0006028	-0.1032	-5.2453E-05	508.2873484864886	21.2	0.16851	21.186	21.089	21.258	-0.014004	1275	79	0.85233563	0.047935665	0.8508162	346.03012	0	19.460846						348	8	3	NaN	NaN	NaN	0.64158	1	8989	8989		12.049	1.4437	1	65220	+		24078	12924	13879	14281	19173	19173					0.05436582399988765
SGAVGKLN	8	Unmodified	_SGAVGKLN_					0	0	0			REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.21377781294996	2	373.213778	744.413003	1.6802	0.00062706	-2.4627	-0.00091911	-0.78253	-0.00029205	373.21294687250037	29.231	0.072378	29.224	29.2	29.272	-0.0077209	1341	37	0.8117308	0.022176862	0.81021136	331.14084	0	9.046936						53	4	2	NaN	NaN	NaN	0.84756	1	3896	3896		1.072	0	1	4989.7	+		24079	9842	13880	14282	19174	19174					0.030572711461331892
SGCAGCLE	8	Unmodified	_SGCAGCLE_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.27493683	1	739.274937	738.26766	1.4119	0.0010437	4.5295	0.0033486	5.9414	0.0043923	739.2787757235482	34.685	0.1687	34.684	34.636	34.804	-0.0006485	567	130	1.2819146	0.077396035	1.2803952	261.5205	0	15.789398						337	8	4	NaN	NaN	NaN	0.8439	1	3811	3811		3.1533	0	1	34972			24080	4478	13881	14283	19175	19175					-0.11194276036712836
SGCMGCGG	8	Unmodified	_SGCMGCGG_					0	0	0		ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	ENST00000243253.7_1_3:127789169-127789619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.1009272428	2	336.100927	670.187302	1.7966	0.00060385	7.7787	0.0026144	9.5753	0.0032183	336.1035302449993	22.477	0.096325	22.477	22.453	22.549	0	1470	100	0.7320868	0.061294734	0.7320868	299.2463	0	25.054718						158	5	2	NaN	NaN	NaN	0.84945	1	2591	2591		0	0	1	13426			24081	6264	13882	14284	19176	19176					-0.16098460631405942
SGDGPACP	8	Unmodified	_SGDGPACP_					0	0	0		ENST00000444521.6_1_1:2520880-2521423:+|nuORF	ENST00000444521.6_1_1:2520880-2521423:+|nuORF	ENST00000444521.6_1_1:2520880-2521423:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.2715660116	1	703.271566	702.26429	1.7717	0.001246	-0.35473	-0.00024947	1.4169	0.0009965	703.2723459567635	26.022	0.096544	26.011	25.938	26.035	-0.011135	711	67	1.1954219	0.03974867	1.1939025	244.10315	0	8.116608						154	5	2	NaN	NaN	NaN	0.84876	1	3192	3192		0.39566	0.065779	1	16065			24082	7015	13883	14285	19177	19177					-0.09875202819068818
SGDPAEYNL	9	Unmodified	_SGDPAEYNL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000496738.5_1_1:156108227-156108894:+|nuORF;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;nc|ENSG00000160789|P02545-6|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.4210670203	1	965.421067	964.413791	1.5013	0.0014494	-0.72124	-0.0006963	0.78011	0.00075313	965.419934781843	20.309	0.14425	20.309	20.261	20.405	0	360	67	1.405474	0.039246917	1.405474	285.49887	0	7.972351						163	7	2	NaN	NaN	NaN	0.060816	1	7456	7456		42.318	25.733	1	16435			24083	4077	13884	14286	19178	19178					-0.06983978995469897
SGEAEGSGA	9	Unmodified	_SGEAEGSGA_					0	0	0			REV__ENSG00000183160|ENST00000392806|TMEM119	REV__ENSG00000183160|ENST00000392806|TMEM119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.3057029115001	1	764.305703	763.298426	1.2952	0.00098995	-3.2216	-0.0024623	-1.9263	-0.0014723	764.3034914515237	27.639	0.24128	27.629	27.581	27.822	-0.009552	597	67	1.2639319	0.03958738	1.2624124	257.69772	0	8.071289						288	11	3	NaN	NaN	NaN	0.63698	1	4181	4181		3.9685	0.81517	1	40319	+		24084	10885	13885	14287	19179	19179					-0.09269083126457645
SGEAEGSGA	9	Unmodified						0	0	0			REV__ENSG00000183160|ENST00000392806|TMEM119	REV__ENSG00000183160|ENST00000392806|TMEM119	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.305703	763.298426	1.6367	0.0012509	-3.265	-0.0024955	-1.6284	-0.0012446	764.303460371343	27.639	0.28953	27.639	27.591	27.881	0	597	61	1.2639319	0.03598845	1.2639319	257.69772		7.337555	0.0051778	-1.441E-05	0.00075972	NaN	3.9685	307	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40565	+		24085	10885	13885	14287							-0.09269083126457645
SGEAEGSGA	9	Unmodified						0	0	0			REV__ENSG00000183160|ENST00000392806|TMEM119	REV__ENSG00000183160|ENST00000392806|TMEM119	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.305703	763.298426	1.2952	0.00098995	-3.2216	-0.0024623	-1.9263	-0.0014723	764.3034914515237	27.639	0.24128	27.629	27.581	27.822	-0.009552	597	67	1.2639319	0.03958738	1.2624124	257.69772		8.071289	-0.0051778	1.8823E-05	-0.00075972	NaN	3.9685	288	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40319	+		24086	10885	13885	14287							-0.09269083126457645
SGEAFVEL	8	Unmodified	_SGEAFVEL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	851.4145250794	1	851.414525	850.407249	1.8858	0.0016056	-0.35738	-0.00030428	1.5284	0.0013013	851.4141437572273	25.853	0.19307	25.841	25.793	25.986	-0.0116	450	64	1.3518641	0.037580848	1.3503447	275.1269	0	7.648346						295	9	3	NaN	NaN	NaN	0.62311	1	5258	5258		23.85	0	1	48653			24087	2521;4694;4653	13886	14288	19180	19180					-0.023938721561876264
SGEPLCPPLL	10	Unmodified	_SGEPLCPPLL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5335943576	1	1025.53359	1024.52632	1.5786	0.0016189	-2.6309	-0.0026981	-1.0523	-0.0010792	1025.5305083627184	30.753	0.09654	30.753	30.704	30.801	0	183	55	1.510409	0.03192067	1.510409	306.56104	0	6.4787903						103	5	2	NaN	NaN	NaN	0.76892	1	9557	9557		3.2116	0	1	11583			24088	261	13887	14289	19181	19181					0.015035784770134342
SGEPLCPPLL	10	Unmodified						0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1025.53359	1024.52632	1.2851	0.0013179	-1.4012	-0.0014369	-0.11602	-0.00011899	1025.5317500341366	30.752	0.072342	30.746	30.698	30.77	-0.0057545	186	88	1.5086359	0.051386952	1.5071164	306.20117		10.429779	-0.0034053	0.00089245	-0.0016463	NaN	3.2116	121	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12680			24089	261	13887	14289							0.015035784770134342
SGFGAGVF	8	Unmodified	_SGFGAGVF_					0	0	0		ENST00000305786.6_2_7:25163733-25164874:-|nuORF;ENST00000409764.5_2_7:25164441-25164874:-|nuORF	ENST00000305786.6_2_7:25163733-25164874:-|nuORF	ENST00000305786.6_2_7:25163733-25164874:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.35661627	1	741.356616	740.34934	2.0136	0.0014928	-10.235	-0.007588	-8.2217	-0.0060952	741.3492740474157	23.223	0.096518	23.21	23.186	23.283	-0.013294	576	88	1.2765218	0.052180648	1.2750024	260.40704	0	10.644714						134	5	2	NaN	NaN	NaN	0.82332	1	3838	3838		6.0903	0.62448	1	9410.7			24090	6423	13888	14290	19182	19182					-0.031220892909573195
SGFGGGHG	8	Unmodified	_SGFGGGHG_					0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.2845139594001	1	675.284514	674.277237	1.4974	0.0010112	-2.372	-0.0016018	-0.87455	-0.00059057	675.2842500091289	53.314	0.19193	53.314	53.266	53.458	0	807	73	1.1375128	0.043497086	1.1375128	232.46252	0	8.889084						374	9	5	NaN	NaN	NaN	0.84876	1	2703	2703		0.39566	0	1	46830	+		24091	13029	13889	14291	19183	19183					-0.07293003644656437
SGFGGGHG	8	Unmodified						0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.284514	674.277237	1.4974	0.0010112	-2.372	-0.0016018	-0.87455	-0.00059057	675.2842500091289	53.314	0.19193	53.314	53.266	53.458	0	807	73	1.1375128	0.043497086	1.1375128	232.46252		8.889084	0.0011311	-0.00052175	-0.00014662	NaN	0.39566	374	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46830	+		24092	13029	13889	14291							-0.07293003644656437
SGFGGGHG	8	Unmodified						0	0	0			REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	REV__KRT3|p.Y93H|1|0.06|ENSG00000186442|chr12:52795766-52795766|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.284514	674.277237	-0.7584	-0.00051214	-0.825	-0.00055711	-1.5834	-0.0010692	675.28471972596	53.312	0.19188	53.312	53.264	53.456	-0.00053406	804	67	1.1393254	0.039867997	1.1378059	232.83295		8.147461	-0.0011311	0.0005229	0.00014662	NaN	0.39566	285	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34783	+		24093	13029	13889	14291							-0.07293003644656437
SGFGGKSA	8	Unmodified	_SGFGGKSA_					0	0	0			REV__CON__Q8VED5	REV__CON__Q8VED5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3467798652	1	710.34678	709.339503	1.1645	0.00082719	-9.027	-0.0064123	-7.8625	-0.0055851	710.3406736111692	30.269	0.072372	30.263	30.238	30.311	-0.0064106	708	40	1.1972283	0.023481488	1.1957089	244.42543	0	4.793976						61	4	2	NaN	NaN	NaN	0.84897	1	3348	3348		0.27539	0	1	4921.1	+	+	24094	8286	13890	14292	19184	19184					-0.026792772963403877
SGFGPPPA	8	Unmodified	_SGFGPPPA_					0	0	0		ENST00000598375.5_1_19:18699891-18700245:+|nuORF	ENST00000598375.5_1_19:18699891-18700245:+|nuORF	ENST00000598375.5_1_19:18699891-18700245:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3566162699999	1	729.356616	728.34934	0.95534	0.00069678	-1.415	-0.0010321	-0.45969	-0.00033528	729.3561989351919	41.641	0.04805	41.649	41.625	41.673	0.0082588	651	61	1.2315145	0.03606558	1.229995	251.30087	0	7.359482						94	3	2	NaN	NaN	NaN	0.84945	1	3659	3659		0	0	1	8458.5			24095	7760	13891	14293	19185	19185					-0.02570089290964006
SGFQAFAA	8	Unmodified	_SGFQAFAA_					0	0	0			REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.3780799936	1	798.37808	797.370804	1.8448	0.0014729	0.078698	6.2831E-05	1.9235	0.0015357	798.3778242592922	24.936	0.14481	24.936	24.888	25.033	0	480	55	1.3339561	0.03225851	1.3339561	271.76938	0	6.572113						122	7	2	NaN	NaN	NaN	0.78967	1	4719	4719		10.605	3.7418	1	9861.9	+		24096	10047	13892	14294	19186	19186					-0.03598704262253705
SGFQAFAA	8	Unmodified						0	0	0			REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.37808	797.370804	1.8448	0.0014729	0.078698	6.2831E-05	1.9235	0.0015357	798.3778242592922	24.936	0.14481	24.936	24.888	25.033	0	480	55	1.3339561	0.03225851	1.3339561	271.76938		6.572113	0.0062952	-0.00045358	-0.0010318	NaN	10.605	122	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9861.9	+		24097	10047	13892	14294							-0.03598704262253705
SGFQAFAA	8	Unmodified						0	0	0			REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	798.37808	797.370804	1.9114	0.001526	1.5883	0.0012681	3.4997	0.0027941	798.3802951407108	24.936	0.072386	24.924	24.9	24.972	-0.012392	474	55	1.3375392	0.03225851	1.3360198	272.49936		6.572113	-0.0062952	0.00075167	0.0010318	NaN	10.605	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6192.5	+		24098	10047	13892	14294							-0.03598704262253705
SGFRDFLL	8	Unmodified	_SGFRDFLL_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.75580980315004	2	477.75581	953.497067	1.47	0.00070231	-1.4908	-0.00071222	-0.020743	-9.9101E-06	477.75504112913296	27.712	0.16889	27.712	27.664	27.833	0	1311	49	0.83019954	0.029530823	0.83019954	337.33203	0	11.9991455						170	8	3	NaN	NaN	NaN	0.48912	1	7167	7167		31.675	11.227	1	22118			24099	5782;2360	13893	14295	19187	19187					0.018458022430536403
SGFRDFLL	8	Unmodified	_SGFRDFLL_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.75580980315004	2	477.75581	953.497067	0.94867	0.00045323	-1.8643	-0.00089067	-0.9156	-0.00043744	477.75469218273986	27.735	0.1448	27.726	27.702	27.846	-0.009552	1308	46	0.83204526	0.027683675	0.8305259	338.08203	0	11.248566						168	7	3	NaN	NaN	NaN	0.48912	1	7025	7025		31.675	7.825	1	22062			24100	5782;2360	13893	14295	19188	19188					0.018458022430536403
SGFSSVSVSR	10	Unmodified	_SGFSSVSVSR_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.75653808465006	2	506.756538	1011.49852	1.7975	0.00091092	-3.1593	-0.001601	-1.3618	-0.00069008	506.7554042401557	16.11	0.071938	16.11	16.086	16.158	0	1326	43	0.8209676	0.025856256	0.8209676	333.3089	0	10.497498						106	4	3	NaN	NaN	NaN	0.095478	1	9038	9038		46.588	10.001	1	11436		+	24101	189	13894	14296	19189	19189					-0.006766084588434751
SGFSSVSVSR	10	Unmodified	_SGFSSVSVSR_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.75653808465006	2	506.756538	1011.49852	1.9137	0.00096976	-1.1841	-0.00060005	0.72957	0.00036971	506.75559838479586	16.107	0.11992	16.094	16.07	16.19	-0.012611	1329	52	0.81912065	0.0313918	0.8176012	332.55902	0	12.744904						103	6	3	NaN	NaN	NaN	0.49667	1	8865	8865		19.592	8.4216	1	11536		+	24102	189	13894	14296	19190	19190					-0.006766084588434751
SGFVKGGG	8	Unmodified	_SGFVKGGG_					0	0	0			REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3675153073002	1	708.367515	707.360239	0.5735	0.00040625	1.3703	0.00097068	1.9438	0.0013769	708.3721861531452	31.38	0.09656	31.38	31.356	31.452	0	735	49	1.1809633	0.028917432	1.1809633	241.11748	0	5.904068						64	5	2	NaN	NaN	NaN	0.84945	1	3358	3358		0	0	1	2953.6	+		24103	11791	13895	14297	19191	19191					-0.005146869166537726
SGFVKGGG	8	Unmodified						0	0	0			REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	REV__ENST00000342160.7_2_X:53707007-53711004:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	708.367515	707.360239	0.5735	0.00040625	1.3703	0.00097068	1.9438	0.0013769	708.3721861531452	31.38	0.09656	31.38	31.356	31.452	0	735	49	1.1809633	0.028917432	1.1809633	241.11748		5.904068	0	0	0	NaN	0	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2953.6	+		24104	11791	13895	14297							-0.005146869166537726
SGGAGPGCP	9	Unmodified	_SGGAGPGCP_					0	0	0			REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	351.64741344669994	2	351.647413	701.280274	1.7968	0.00063182	-3.3547	-0.0011797	-1.558	-0.00054786	351.64671355832166	40.751	0.12	40.757	40.709	40.829	0.0067558	1515	40	0.7042165	0.024175227	0.70269704	287.5995	0	9.873077						84	6	2	NaN	NaN	NaN	0.67989	1	3181	3181		0.92586	0	1	4195.9	+		24105	11933	13896	14298	19192	19192					-0.08231496582175168
SGGAGPGCP	9	Unmodified						0	0	0			REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	351.647413	701.280274	1.7968	0.00063182	-3.3547	-0.0011797	-1.558	-0.00054786	351.64671355832166	40.751	0.12	40.757	40.709	40.829	0.0067558	1515	40	0.7042165	0.024175227	0.70269704	287.5995		9.873077	0.0023816	-5.086E-05	0.0011	NaN	0.92586	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4195.9	+		24106	11933	13896	14298							-0.08231496582175168
SGGCCGRG	8	Unmodified	_SGGCCGRG_					0	0	0			REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	REV__ENST00000321264.8_1_2:242707393-242707465:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.2552044409	1	696.255204	695.247928	0.77473	0.00053941	-1.6769	-0.0011676	-0.90221	-0.00062817	696.2540421711969	29.352	0.36192	29.344	29.248	29.61	-0.0077209	1104	58	0.9570911	0.034805596	0.95557165	195.47412	0	7.108612						284	16	2	NaN	NaN	NaN	0.84692	1	3072	3072		1.4396	0	1	36659	+		24107	11721	13897	14299	19193	19193					-0.1118860725681543
SGGCSGCA	8	Unmodified	_SGGCSGCA_					0	0	0			REV__ENSG00000185940|ENST00000399676|KRTAP5-5	REV__ENSG00000185940|ENST00000399676|KRTAP5-5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2017718869	1	641.201772	640.194495	2.4967	0.0016009	-3.3777	-0.0021658	-0.88101	-0.0005649	641.1985952165483	26.022	0.24132	26.022	25.805	26.046	0	831	121	1.1230044	0.07257295	1.1230044	229.74042	0	14.846741						695	11	3	NaN	NaN	NaN	0.84887	1	1732	1732		0.32989	0	1	119980	+		24108	10979	13898	14300	19194	19194					-0.13999404759329082
SGGCSGCA	8	Unmodified						0	0	0			REV__ENSG00000185940|ENST00000399676|KRTAP5-5	REV__ENSG00000185940|ENST00000399676|KRTAP5-5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	641.201772	640.194495	2.4967	0.0016009	-3.3777	-0.0021658	-0.88101	-0.0005649	641.1985952165483	26.022	0.24132	26.022	25.805	26.046	0	831	121	1.1230044	0.07257295	1.1230044	229.74042		14.846741	0.017747	-0.00023847	-0.00014739	NaN	0.32989	695	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119980	+		24109	10979	13898	14300							-0.13999404759329082
SGGFPGIG	8	Unmodified	_SGGFPGIG_					0	0	0		ENST00000337351.8_1_16:239199-239475:-|nuORF	ENST00000337351.8_1_16:239199-239475:-|nuORF	ENST00000337351.8_1_16:239199-239475:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3409662058002	1	691.340966	690.33369	1.4051	0.00097137	7.9197	0.0054752	9.3248	0.0064466	691.3460982881588	23.995	0.19294	23.982	23.886	24.079	-0.013048	756	91	1.1683017	0.05426073	1.1667823	238.64406	0	11.083618						237	9	3	NaN	NaN	NaN	0.84651	1	2971	2971		1.6704	0	1	15185			24110	6528	13899	14301	19195	19195					-0.023863758079869513
SGGGDDND	8	Unmodified	_SGGGDDND_					0	0	0			REV__ENST00000482151.1_2:149856814-149868187:+|nuORF	REV__ENST00000482151.1_2:149856814-149868187:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.2380172768	1	736.238017	735.230741	1.492	0.0010984	-5.4323	-0.0039995	-3.9404	-0.0029011	736.2332470554393	20.646	0.048147	20.646	20.622	20.67	0	1098	28	0.960755	0.016486824	0.960755	196.01625	0	3.3637085						38	3	2	NaN	NaN	NaN	0.84945	1	3829	3829		0	0	1	2221.4	+		24111	10503	13900	14302	19196	19196					-0.14746533057279976
SGGGGCKS	8	Unmodified	_SGGGGCKS_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.2719003626	1	652.2719	651.264624	1.3649	0.00089029	-9.6643	-0.0063037	-8.2994	-0.0054134	652.2653852895288	28.87	0.096542	28.87	28.846	28.943	0	684	289	1.2116731	0.1739521	1.2116731	247.79193	0	35.573883						474	5	2	NaN	NaN	NaN	0.84782	1	2085	2085		0.92586	0.59598	1	38428			24112	2207	13901	14303	19197	19197					-0.07495783099216169
SGGGGEWI	8	Unmodified	_SGGGGEWI_					0	0	0			REV__SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|16|2|sense	REV__SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|16|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	762.3416944873001	1	762.341694	761.334418	2.0051	0.0015286	-8.061	-0.0061452	-6.0559	-0.0046167	762.3341746846371	53.674	0.048187	53.674	53.626	53.674	0	585	43	1.2711272	0.025173187	1.2711272	259.17657	0	5.1326904						42	3	2	NaN	NaN	NaN	0.84887	1	4225	4225		0.32989	0	1	2329.5	+		24113	13362	13902	14304	19198	19198					-0.05579581158951896
SGGGGGGRL	9	Unmodified	_SGGGGGGRL_					0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3638269129	1	717.363827	716.35655	0.46011	0.00033007	-2.3817	-0.0017086	-1.9216	-0.0013785	717.3616593157911	31.235	0.19308	31.235	31.187	31.38	0	567	55	1.2819146	0.03235507	1.2819146	261.66632	0	6.60437						140	9	2	NaN	NaN	NaN	0.63698	1	3538	3538		3.9685	0	1	12716	+		24114	12040	13903	14305	19199	19199					-0.012973566905316147
SGGGGGGRL	9	Unmodified						0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	717.363827	716.35655	0.46011	0.00033007	-2.3817	-0.0017086	-1.9216	-0.0013785	717.3616593157911	31.235	0.19308	31.235	31.187	31.38	0	567	55	1.2819146	0.03235507	1.2819146	261.66632		6.60437	0.0030577	0.001565	0.0016584	NaN	3.9685	140	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12716	+		24115	12040	13903	14305							-0.012973566905316147
SGGGGGGRL	9	Unmodified						0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.363827	716.35655	0.86376	0.00061963	-5.9593	-0.004275	-5.0955	-0.0036553	717.3596565759997	31.234	0.16893	31.229	31.181	31.35	-0.0050716	570	52	1.2801172	0.030555964	1.2785977	261.29944		6.2371216	-0.0030577	-0.0010014	-0.0016584	NaN	3.9685	148	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13289	+		24116	12040	13903	14305							-0.012973566905316147
SGGGGGSSF	9	Unmodified	_SGGGGGSSF_					0	0	0			REV__ENSG00000203782|ENST00000368742|LORICRIN	REV__ENSG00000203782|ENST00000368742|LORICRIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.2896589168	1	712.289659	711.282382	0.94097	0.00067024	-1.76	-0.0012536	-0.81901	-0.00058337	712.2880069840209	27.036	0.19301	27.036	26.843	27.036	0	1083	55	0.9699114	0.032947004	0.9699114	198.00626	0	6.7260895						167	9	2	NaN	NaN	NaN	0.66196	1	3445	3445		2.4615	0	1	17498	+		24117	11216	13904	14306	19200	19200					-0.08480744572705134
SGGGKGKA	8	Unmodified	_SGGGKGKA_					0	0	0			REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3627642803999	1	661.362764	660.355488	-0.13594	-8.9908E-05	-7.4999	-0.0049602	-7.6359	-0.0050501	661.3569843856528	55.915	0.14412	55.914	55.89	56.034	-0.00059128	744	73	1.1755381	0.043399334	1.1740186	240.33409	0	8.872803						161	7	3	NaN	NaN	NaN	0.84945	1	2228	2228		0	0	1	17558	+		24118	12814	13905	14307	19201	19201					0.011724289405492527
SGGGLVGA	8	Unmodified	_SGGGLVGA_					0	0	0		ENST00000553922.5_1_14:74417035-74417251:+|nuORF;ENST00000554217.5_1_14:74417035-74420277:+|nuORF;ENST00000555552.5_1_14:74417035-74423148:+|nuORF;ENST00000554193.5_1_14:74417035-74422669:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF;ENSG00000119723|ENST00000334571|COQ6	ENST00000553922.5_1_14:74417035-74417251:+|nuORF	ENST00000553922.5_1_14:74417035-74417251:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	309.1662963041	2	309.166296	616.31804	1.3613	0.00042086	2.8919	0.00089409	4.2532	0.0013149	309.16699866164873	42.962	0.072067	42.962	42.938	43.01	0	1500	34	0.71351165	0.020447075	0.71351165	292.1614	0	8.372467						70	4	2	NaN	NaN	NaN	0.84887	1	1047	1047		0.32989	0	1	4622.6			24119	2230	13906	14308	19202	19202					-0.0054666232504132495
SGGGPGGSG	9	Unmodified	_SGGGPGGSG_					0	0	0		ENSG00000105723|ENST00000222330|GSK3A	ENSG00000105723|ENST00000222330|GSK3A	ENSG00000105723|ENST00000222330|GSK3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.2634441663	1	632.263444	631.256168	1.2537	0.00079267	-9.4658	-0.0059849	-8.2121	-0.0051922	632.2573321641936	29.762	0.096527	29.755	29.707	29.803	-0.0070667	1167	46	0.91857195	0.027552247	0.9170525	187.97394	0	5.638214						75	5	2	NaN	NaN	NaN	0.66529	1	1425	1425		2.1763	0	1	7763.7			24120	1562	13907	14309	19203	19203					-0.07421013744180982
SGGGPPNG	8	Unmodified	_SGGGPPNG_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.2841796084001	1	642.28418	641.276903	1.3365	0.00085839	7.5596	0.0048554	8.8961	0.0057138	642.2893276246454	31.863	0.24133	31.863	31.839	32.08	0	729	91	1.184579	0.054272413	1.184579	242.32854	0	11.102463						247	11	4	NaN	NaN	NaN	0.84887	1	1761	1761		0.32989	0	1	23722			24121	5894	13908	14310	19204	19204					-0.05808423364510418
SGGGPSPGP	9	Unmodified	_SGGGPSPGP_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	712.3260444231	1	712.326044	711.318768	1.1884	0.00084654	-7.976	-0.0056815	-6.7876	-0.004835	712.3204305463422	36.374	0.072319	36.374	36.35	36.422	0	1080	34	0.9717421	0.020135403	0.9717421	198.37982	0	4.110611						47	4	2	NaN	NaN	NaN	0.67818	1	3448	3448		1.072	0	1	3334.3			24122	4128	13909	14311	19205	19205					-0.04843867675992897
SGGGSSKT	8	Unmodified	_SGGGSSKT_					0	0	0		FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.3209590452001	1	680.320959	679.313683	2.5056	0.0017046	-8.1308	-0.0055315	-5.6252	-0.003827	680.3158894120689	19.034	0.071983	19.02	18.996	19.068	-0.014059	1107	31	0.9552588	0.01832366	0.9537394	195.18828	0	3.7440796						45	4	2	NaN	NaN	NaN	0.84887	1	2745	2745		0.32989	0	1	2462			24123	7801	13910	14312	19206	19206					-0.03880171538605737
SGGGSSSS	8	Unmodified	_SGGGSSSS_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000081913|ENST00000262719|PHLPP1	CON__Q5XQN5;ENSG00000081913|ENST00000262719|PHLPP1;REV__ENSG00000179051|ENST00000375436|RCC2	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.2423743732	1	625.242374	624.235098	1.7233	0.0010775	6.7725	0.0042345	8.4958	0.0053119	625.2462141488636	56.469	0.07198	56.469	56.445	56.517	0	813	40	1.1338868	0.023569703	1.1338868	232.09055	0	4.824402						52	4	2	NaN	NaN	NaN	0.84887	1	1217	1217		0.32989	0	1	4192.9		+	24124	219;10799;926	13911	14313	19207	19207					-0.09205023843696836
SGGGSSSS	8	Unmodified						0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000081913|ENST00000262719|PHLPP1	CON__Q5XQN5;ENSG00000081913|ENST00000262719|PHLPP1;REV__ENSG00000179051|ENST00000375436|RCC2	CON__Q5XQN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	625.242374	624.235098	-0.36034	-0.0002253	11.021	0.006891	10.661	0.0066657	625.2494513822185	56.467	0.047909	56.466	56.442	56.49	-0.00056458	810	43	1.1356999	0.025384188	1.1341804	232.46164		5.1957855	-0.0012953	0.0013479	0.00014681	NaN	0.32989	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4829		+	24125	219;10799;926	13911	14313							-0.09205023843696836
SGGGSYMYY	9	Unmodified	_SGGGSYMYY_					0	0	0			REV__ENST00000488903.1_1_1:230203027-230227371:+|nuORF	REV__ENST00000488903.1_1_1:230203027-230227371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.69201791559993	2	492.692018	983.369483	1.562	0.0007696	-1.7391	-0.00085686	-0.17711	-8.7259E-05	492.69169358285353	18.146	0.14398	18.132	18.084	18.228	-0.013948	1377	49	0.7895419	0.029604435	0.78802246	320.67322	0	12.023865						151	7	3	NaN	NaN	NaN	0.61413	1	7812	7812		4.9097	0	1	13394	+		24126	9875	13912	14314	19208	19208					-0.12286706413317461
SGGGSYMYY	9	Unmodified						0	0	0			REV__ENST00000488903.1_1_1:230203027-230227371:+|nuORF	REV__ENST00000488903.1_1_1:230203027-230227371:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.692018	983.369483	1.562	0.0007696	-1.7391	-0.00085686	-0.17711	-8.7259E-05	492.69169358285353	18.146	0.14398	18.132	18.084	18.228	-0.013948	1377	49	0.7895419	0.029604435	0.78802246	320.67322		12.023865	0.003521	0.00030376	-0.00075972	NaN	4.9097	151	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13394	+		24127	9875	13912	14314							-0.12286706413317461
SGGGWPGG	8	Unmodified	_SGGGWPGG_					0	0	0			REV__ENST00000230340.8_1_6:41889245-41895142:+|nuORF	REV__ENST00000230340.8_1_6:41889245-41895142:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.2892649863	1	674.289265	673.281989	-0.53798	-0.00036276	-3.4536	-0.0023288	-3.9916	-0.0026915	674.2877815934929	54.282	0.11979	54.281	54.233	54.353	-0.00061798	747	37	1.1737292	0.021706581	1.1722097	239.87079	0	4.4361115						99	6	3	NaN	NaN	NaN	0.84876	1	2586	2586		0.39566	0	1	6759.5	+		24128	11479	13913	14315	19209	19209					-0.06772119501897578
SGGHRGGG	8	Unmodified	_SGGHRGGG_					0	0	0		ENST00000584661.5_2_17:25958249-25967633:+|nuORF;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	ENST00000584661.5_2_17:25958249-25967633:+|nuORF	ENST00000584661.5_2_17:25958249-25967633:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.6622437689501	2	342.662244	683.309935	1.7726	0.00060739	1.8414	0.00063099	3.614	0.0012384	342.66292076910213	38.321	0.16826	38.325	38.277	38.445	0.0040245	1506	61	0.70979416	0.037190676	0.7082747	290.02292	0	15.196167						184	8	3	NaN	NaN	NaN	0.84887	1	2822	2822		0.32989	0	1	14774			24129	7034	13914	14316	19210	19210					-0.04438796521799304
SGGHRGGG	8	Unmodified						0	0	0		ENST00000584661.5_2_17:25958249-25967633:+|nuORF;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	ENST00000584661.5_2_17:25958249-25967633:+|nuORF	ENST00000584661.5_2_17:25958249-25967633:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	342.662244	683.309935	0.77369	0.00026511	2.253	0.00077203	3.0267	0.0010371	342.6630804293634	38.348	0.096119	38.348	38.299	38.396	0	1515	58	0.7042165	0.035333037	0.7042165	287.74387		14.437134	0.011147	0.00018219	-0.0020291	NaN	0.32989	147	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12832			24130	7034	13914	14316							-0.04438796521799304
SGGHTNII	8	Unmodified	_SGGHTNII_					0	0	0		tr|U7SH79|U7SH79_FUSNUtRNAN6-adenosinethreonylcarbamoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsaDPE=3SV=1	tr|U7SH79|U7SH79_FUSNUtRNAN6-adenosinethreonylcarbamoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsaDPE=3SV=1	tr|U7SH79|U7SH79_FUSNUtRNAN6-adenosinethreonylcarbamoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsaDPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4104427545002	1	798.410443	797.403166	1.4801	0.0011818	-8.2924	-0.0066207	-6.8122	-0.005439	798.4025943889121	28.628	0.072374	28.62	28.596	28.668	-0.0083504	465	55	1.3429124	0.032241344	1.341393	273.59393	0	6.568573						88	4	2	NaN	NaN	NaN	0.65075	1	4634	4634		22.126	0	1	8993.2			24131	13735	13915	14317	19211	19211					-0.003639168592258102
SGGKGKGG	8	Unmodified	_SGGKGKGG_					0	0	0		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3471142162001	1	647.347114	646.339838	1.0815	0.00070008	3.2162	0.002082	4.2977	0.0027821	647.3490367823028	40.705	0.16797	40.705	40.609	40.777	0	753	43	1.1701111	0.02533257	1.1701111	239.32974	0	5.1814117						159	8	2	NaN	NaN	NaN	0.84887	1	1950	1950		0.32989	0	1	30272			24132	5692	13916	14318	19212	19212					0.0025214242352831207
SGGKGKGG	8	Unmodified	_SGGKGKGG_					0	0	0		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3471142162001	1	647.347114	646.339838	0.98612	0.00063836	7.0923	0.0045911	8.0784	0.0052295	647.351619649127	37.699	0.21645	37.699	37.675	37.891	0	807	85	1.1375128	0.050730348	1.1375128	232.66219	0	10.37616						179	10	2	NaN	NaN	NaN	0.84887	1	1952	1952		0.32989	0	1	11081			24133	5692	13916	14318	19213	19213					0.0025214242352831207
SGGKGKGG	8	Unmodified						0	0	0		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	647.347114	646.339838	1.4147	0.0009158	1.7791	0.0011517	3.1938	0.0020675	647.3473509114092	40.823	0.096107	40.83	40.83	40.926	0.0074959	753	37	1.1701111	0.02171135	1.1685916	239.32974		4.440735	0.062752	-0.0008029	-0.00075972	NaN	0.32989	81	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6135.6			24134	5692	13916	14318							0.0025214242352831207
SGGKTSSA	8	Unmodified	_SGGKTSSA_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.S3487F|1|0.33|ENSG00000181143|chr19:8966310-8966310|G/A|missense_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3366091094	1	694.336609	693.329333	1.2514	0.00086891	3.5307	0.0024515	4.7822	0.0033204	694.33934829089	36.326	0.1929	36.326	36.302	36.495	0	651	64	1.2315145	0.03785467	1.2315145	251.53516	0	7.7317657						205	9	3	NaN	NaN	NaN	0.84756	1	3110	3110		1.072	0.74213	1	21378			24135	5214	13917	14319	19214	19214					-0.029598850215734274
SGGPGGTR	8	Unmodified	_SGGPGGTR_					0	0	0		ENST00000551801.1_1_14:105857872-105861006:+|nuORF;ENST00000548796.1_1_14:105857553-105859601:+|nuORF;ENST00000542215.5_1_X:41193845-41203505:+|nuORF	ENST00000551801.1_1_14:105857872-105861006:+|nuORF	ENST00000551801.1_1_14:105857872-105861006:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3372778114001	1	688.337278	687.330001	0.85737	0.00059016	7.7495	0.0053343	8.6069	0.0059244	688.3423175155225	32.272	0.19307	32.268	32.196	32.389	-0.0037613	729	91	1.184579	0.054196835	1.1830596	241.98952	0	11.071503						177	9	2	NaN	NaN	NaN	0.84782	1	2897	2897		0.92586	0	1	16308			24136	7504	13918	14320	19215	19215					-0.026170455818487426
SGGPVVVL	8	Unmodified	_SGGPVVVL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.4348665910001	1	727.434867	726.42759	1.3544	0.00098525	0.373	0.00027133	1.7274	0.0012566	727.4352887066649	24.912	0.12067	24.912	24.864	24.985	0	645	73	1.2351195	0.04324639	1.2351195	252.04881	0	8.825195						178	6	2	NaN	NaN	NaN	0.72043	1	3717	3717		17.78	4.0433	1	23193			24137	3460	13919	14321	19216	19216					0.053433432942824766
SGGPVVVL	8	Unmodified	_SGGPVVVL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4348665910001	1	727.434867	726.42759	1.3672	0.00099454	0.87334	0.0006353	2.2405	0.0016298	727.435189054229	24.912	0.1448	24.9	24.851	24.996	-0.012392	645	70	1.2351195	0.041437745	1.2336	252.04881	0	8.456116						197	7	3	NaN	NaN	NaN	0.40747	1	3632	3632		36.036	12.186	1	20237			24138	3460	13919	14321	19217	19217					0.053433432942824766
SGGSGELL	8	Unmodified	_SGGSGELL_					0	0	0			REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	REV__CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3570102005	1	719.35701	718.349734	0.86894	0.00062508	-4.1245	-0.002967	-3.2555	-0.0023419	719.3538485847852	33.937	0.16893	33.936	33.887	34.056	-0.0012474	741	40	1.1773466	0.023509264	1.1758271	240.30923	0	4.798477						106	8	2	NaN	NaN	NaN	0.84727	1	3494	3494		1.2418	0.84618	1	9250.6	+		24139	8195	13920	14322	19218	19218					-0.020707143617642032
SGGSGSRS	8	Unmodified	_SGGSGSRS_					0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3114569914001	1	694.311457	693.304181	1.7859	0.00124	-6.6023	-0.004584	-4.8164	-0.0033441	694.3068905297647	13.252	0.69651	13.252	12.964	13.661	0	690	88	1.2080631	0.05237639	1.2080631	246.74545	0	10.6978						779	30	3	NaN	NaN	NaN	0.84897	1	3107	3107		0.27539	0	1	145910	+		24140	11600	13921	14323	19219	19219					-0.054739398241395065
SGGSGSRS	8	Unmodified	_SGGSGSRS_					0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3114569914001	1	694.311457	693.304181	1.2034	0.00083554	-5.6536	-0.0039253	-4.4501	-0.0030898	694.3076983944677	13.254	0.57538	13.243	12.956	13.531	-0.010098	690	79	1.2080631	0.04695058	1.2065437	246.74545	0	9.589584						731	25	3	NaN	NaN	NaN	0.84512	1	3038	3038		2.4615	0	1	147880	+		24141	11600	13921	14323	19220	19220					-0.054739398241395065
SGGSGSRS	8	Unmodified						0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	694.311457	693.304181	1.7859	0.00124	-6.6023	-0.004584	-4.8164	-0.0033441	694.3068905297647	13.252	0.69651	13.252	12.964	13.661	0	690	88	1.2080631	0.05237639	1.2080631	246.74545		10.6978	0.004513	-0.00034595	0.00075972	NaN	2.4615	779	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145910	+		24142	11600	13921	14323							-0.054739398241395065
SGGSGSRS	8	Unmodified						0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.311457	693.304181	1.2034	0.00083554	-5.6536	-0.0039253	-4.4501	-0.0030898	694.3076983944677	13.254	0.57538	13.243	12.956	13.531	-0.010098	690	79	1.2080631	0.04695058	1.2065437	246.74545		9.589584	-0.004513	0.00031276	-0.00075972	NaN	2.4615	731	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147880	+		24143	11600	13921	14323							-0.054739398241395065
SGGSSVAG	8	Unmodified	_SGGSSVAG_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.2838452574001	1	621.283845	620.276569	1.3419	0.00083372	7.3747	0.0045818	8.7166	0.0054155	621.2884008794049	21.464	0.16869	21.464	21.44	21.609	0	783	94	1.1520087	0.056168675	1.1520087	235.83203	0	11.498505						212	8	3	NaN	NaN	NaN	0.84887	1	1155	1155		0.32989	0	1	29429			24144	1210	13922	14324	19221	19221					-0.0487584308436908
SGGTGPPP	8	Unmodified	_SGGTGPPP_					0	0	0			REV__ENST00000449500.1_1_20:62259621-62259837:+|nuORF	REV__ENST00000449500.1_1_20:62259621-62259837:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	335.16375361515	2	335.163754	668.312954	1.2538	0.00042023	6.0132	0.0020154	7.267	0.0024356	335.1660040670459	42.794	0.11979	42.794	42.722	42.842	0	1536	46	0.69119483	0.027909696	0.69119483	282.5472	0	11.408936						109	6	2	NaN	NaN	NaN	0.8439	1	2546	2546		3.1533	1.483	1	13746	+		24145	12226	13923	14325	19222	19222					-0.03446966187664202
SGHALLRQ	8	Unmodified	_SGHALLRQ_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.25122595175003	2	441.251226	880.487899	1.0715	0.00047279	-2.5486	-0.0011246	-1.4771	-0.00065178	441.24997634140396	12.006	0.14392	11.998	11.926	12.07	-0.0081863	1557	34	0.67816323	0.02048713	0.6766438	275.88013	0	8.334259						94	7	2	NaN	NaN	NaN	0.43738	1	5687	5687		34.439	2.7633	1	8988.3			24146	4894	13924	14326	19223	19223					0.04287453677375197
SGHDDHESHM	10	Unmodified	_SGHDDHESHM_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2121687582501	2	576.212169	1150.40978	1.826	0.0010522	3.7032	0.0021339	5.5292	0.003186	576.2144236160659	22.019	0.072279	22.019	21.994	22.067	0	1236	46	0.876284	0.027611852	0.876284	355.18988	0	11.192108						77	4	2	NaN	NaN	NaN	0.77513	1	14812	14812		1.7022	0.37103	1	5387.4			24147	824	13925	14327	19224	19224					-0.15940391760818784
SGHGANFL	8	Unmodified	_SGHGANFL_					0	0	0		ENSG00000170835|ENST00000372080|CEL;nc|ENSG00000170835|P19835-2|CEL	ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.384228004	1	802.384228	801.376952	1.7394	0.0013956	-9.4174	-0.0075563	-7.678	-0.0061607	802.3763976251254	36.181	0.24107	36.181	36.133	36.374	0	477	73	1.3357477	0.043006897	1.3357477	272.11142	0	8.761139						316	11	3	NaN	NaN	NaN	0.78264	1	4760	4760		11.548	0	1	41371			24148	4747	13926	14328	19225	19225					-0.031681860307230636
SGHGANFL	8	Unmodified	_SGHGANFL_					0	0	0		ENSG00000170835|ENST00000372080|CEL;nc|ENSG00000170835|P19835-2|CEL	ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	802.384228004	1	802.384228	801.376952	1.6445	0.0013196	-8.325	-0.0066799	-6.6805	-0.0053603	802.3775915893119	36.18	0.21686	36.181	36.132	36.349	0.0011024	474	61	1.3375392	0.035823703	1.3360198	272.47635	0	7.297821						198	10	2	NaN	NaN	NaN	0.74229	1	4670	4670		16.417	1.2413	1	30826			24149	4747	13926	14328	19226	19226					-0.031681860307230636
SGHGKLEF	8	Unmodified	_SGHGKLEF_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.72450967475	2	437.72451	873.434466	1.6046	0.00070235	0.54886	0.00024025	2.1534	0.0009426	437.7242606877631	26.046	0.16896	26.046	25.998	26.167	0	1362	40	0.79879075	0.024039328	0.79879075	324.99225	0	9.780518						131	8	3	NaN	NaN	NaN	0.81756	1	5715	5715		6.8632	1.9535	1	11588			24150	1132	13927	14329	19227	19227					-0.0073134382514581375
SGHGKLEF	8	Unmodified	_SGHGKLEF_					0	0	0		ENSG00000095739|ENST00000375533|BAMBI;ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENSG00000095739|ENST00000375533|BAMBI	ENSG00000095739|ENST00000375533|BAMBI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.72450967475	2	437.72451	873.434466	1.7458	0.0007642	0.5316	0.00023269	2.2774	0.00099689	437.7246543686576	26.07	0.16896	26.059	26.011	26.18	-0.011137	1362	46	0.79879075	0.027743638	0.7972713	324.99225	0	11.287659						121	8	2	NaN	NaN	NaN	0.83913	1	5577	5577		3.9685	0.39873	1	13322			24151	1132	13927	14329	19228	19228					-0.0073134382514581375
SGHLGRIA	8	Unmodified	_SGHLGRIA_					0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.73266905785	2	405.732669	809.450785	1.6085	0.0006526	-2.1445	-0.00087011	-0.53607	-0.0002175	405.7317117941149	11.98	0.31215	11.98	11.86	12.172	0	1440	61	0.7506418	0.037081838	0.7506418	305.77573	0	15.105377						499	14	3	NaN	NaN	NaN	0.40747	1	4883	4883		36.036	0	1	174270	+		24152	9800	13928	14330	19229	19229					0.03843782131605167
SGHLGRIA	8	Unmodified	_SGHLGRIA_					0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.73266905785	2	405.732669	809.450785	1.3746	0.0005577	-1.7626	-0.00071515	-0.38805	-0.00015744	405.7320772765651	12.006	0.35989	11.998	11.878	12.238	-0.0081863	1437	64	0.7524962	0.038933814	0.75097674	306.5311	0	15.859772						591	16	3	NaN	NaN	NaN	0.54545	1	4787	4787		28.667	0	1	179580	+		24153	9800	13928	14330	19230	19230					0.03843782131605167
SGHLGRIA	8	Unmodified	_SGHLGRIA_					0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.73266905785	2	405.732669	809.450785	1.0599	0.00043005	-1.3429	-0.00054488	-0.28302	-0.00011483	405.7321173399228	12.006	0.19189	11.998	11.926	12.118	-0.0081863	1557	46	0.67816323	0.027936995	0.6766438	276.2514	0	11.3802185						181	9	3	NaN	NaN	NaN	0.65075	1	4788	4788		22.126	4.346	1	22111	+		24154	9800	13928	14330	19231	19231					0.03843782131605167
SGHLGRIA	8	Unmodified						0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.732669	809.450785	1.6085	0.0006526	-2.1445	-0.00087011	-0.53607	-0.0002175	405.7317117941149	11.98	0.31215	11.98	11.86	12.172	0	1440	61	0.7506418	0.037081838	0.7506418	305.77573		15.105377	-0.0088749	-0.00014752	-0.00016748	NaN	36.036	499	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174270	+		24155	9800	13928	14330							0.03843782131605167
SGHLGRIA	8	Unmodified						0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.732669	809.450785	1.3746	0.0005577	-1.7626	-0.00071515	-0.38805	-0.00015744	405.7320772765651	12.006	0.35989	11.998	11.878	12.238	-0.0081863	1437	64	0.7524962	0.038933814	0.75097674	306.5311		15.859772	0.0088749	0.00016239	0.00016748	NaN	36.036	591	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179580	+		24156	9800	13928	14330							0.03843782131605167
SGHRASGA	8	Unmodified	_SGHRASGA_					0	0	0		ENST00000502332.5_2_3:167967434-167967542:+|nuORF	ENST00000502332.5_2_3:167967434-167967542:+|nuORF	ENST00000502332.5_2_3:167967434-167967542:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.359075886	1	742.359076	741.351799	1.7516	0.0013003	-11.058	-0.0082089	-9.3063	-0.0069086	742.3506974455561	22.573	0.16887	22.573	22.549	22.718	0	609	106	1.2567334	0.06305063	1.2567334	256.36398	0	12.861847						235	8	3	NaN	NaN	NaN	0.72013	1	3928	3928		17.799	7.194	1	58725			24157	7310	13929	14331	19232	19232					-0.029222408332884697
SGHRASGA	8	Unmodified						0	0	0		ENST00000502332.5_2_3:167967434-167967542:+|nuORF	ENST00000502332.5_2_3:167967434-167967542:+|nuORF	ENST00000502332.5_2_3:167967434-167967542:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	742.359076	741.351799	1.5035	0.0011161	-10.807	-0.0080228	-9.3037	-0.0069067	742.3512846998101	22.621	0.19298	22.607	22.559	22.752	-0.01354	609	67	1.2567334	0.039604306	1.255214	256.36395		8.0789795	0.017074	0.0001415	-0.00075972	NaN	17.799	237	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31598			24158	7310	13929	14331							-0.029222408332884697
SGHSGLQL	8	Unmodified	_SGHSGLQL_					0	0	0			REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.4104427545	1	798.410443	797.403166	2.1201	0.0016927	-10.749	-0.0085824	-8.6293	-0.0068897	798.4012905829322	30.101	0.14482	30.101	30.077	30.222	0	456	52	1.348284	0.030435681	1.348284	274.6883	0	6.200714						171	7	3	NaN	NaN	NaN	0.67593	1	4721	4721		20.555	0	1	18024	+		24159	12292	13930	14332	19233	19233					-0.0036391685924854755
SGHSGLQL	8	Unmodified	_SGHSGLQL_					0	0	0			REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4104427545	1	798.410443	797.403166	1.2702	0.0010141	-9.3492	-0.0074645	-8.079	-0.0064504	798.4027184591027	30.1	0.14478	30.094	30.07	30.214	-0.0064106	456	64	1.348284	0.037604928	1.3467646	274.6883	0	7.661316						153	7	3	NaN	NaN	NaN	0.80692	1	4632	4632		8.2903	0	1	14752	+		24160	12292	13930	14332	19234	19234					-0.0036391685924854755
SGHSGLQL	8	Unmodified						0	0	0			REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.410443	797.403166	2.1201	0.0016927	-10.749	-0.0085824	-8.6293	-0.0068897	798.4012905829322	30.101	0.14482	30.101	30.077	30.222	0	456	52	1.348284	0.030435681	1.348284	274.6883		6.200714	0.0036934	-0.00056318	0.00075972	NaN	20.555	171	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18024	+		24161	12292	13930	14332							-0.0036391685924854755
SGHSGLQL	8	Unmodified						0	0	0			REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	798.410443	797.403166	1.2702	0.0010141	-9.3492	-0.0074645	-8.079	-0.0064504	798.4027184591027	30.1	0.14478	30.094	30.07	30.214	-0.0064106	456	64	1.348284	0.037604928	1.3467646	274.6883		7.661316	-0.0036934	0.00055469	-0.00075972	NaN	20.555	153	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14752	+		24162	12292	13930	14332							-0.0036391685924854755
SGIDILLDGK	10	Unmodified	_SGIDILLDGK_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7925892399501	2	515.792589	1029.57063	1.2013	0.00061963	8.7729	0.004525	9.9742	0.0051446	515.7970883158634	15.172	0.14408	15.16	15.136	15.28	-0.012202	1287	67	0.8449601	0.040574074	0.84344065	342.96884	0	16.469025						201	7	3	NaN	NaN	NaN	0.65442	1	9573	9573		11.17	0	1	35946	+		24163	10444	13931	14333	19235	19235					0.057023058948516336
SGKGGGGS	8	Unmodified	_SGKGGGGS_					0	0	0			REV__ENST00000339992.3_1_10:124909777-124909951:+|nuORF	REV__ENST00000339992.3_1_10:124909777-124909951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.2841796084	1	606.28418	605.276903	1.2411	0.00075246	-2.9624	-0.001796	-1.7213	-0.0010436	606.2819760869459	30.391	0.072412	30.391	30.391	30.463	0	1173	40	0.91489893	0.023881197	0.91489893	187.39238	0	4.8914337						57	4	2	NaN	NaN	NaN	0.84897	1	713	713		0.27539	0	1	4447.2	+		24164	11780	13932	14334	19236	19236					-0.041524233645304776
SGKGGGGS	8	Unmodified						0	0	0			REV__ENST00000339992.3_1_10:124909777-124909951:+|nuORF	REV__ENST00000339992.3_1_10:124909777-124909951:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	606.28418	605.276903	1.2411	0.00075246	-2.9624	-0.001796	-1.7213	-0.0010436	606.2819760869459	30.391	0.072412	30.391	30.391	30.463	0	1173	40	0.91489893	0.023881197	0.91489893	187.39238		4.8914337	0	0	0	NaN	0.27539	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4447.2	+		24165	11780	13932	14334							-0.041524233645304776
SGKGKAAP	8	Unmodified	_SGKGKAAP_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.4097144729999	1	715.409714	714.402438	1.3566	0.00097055	-2.2794	-0.0016307	-0.92275	-0.00066014	715.4082477130656	53.338	0.12004	53.338	53.29	53.41	0	618	82	1.2513325	0.048597455	1.2513325	255.43697	0	9.920319						246	6	4	NaN	NaN	NaN	0.84945	1	3511	3511		0	0	1	19099	+		24166	9741	13933	14335	19237	19237					0.03381288491698342
SGKGLSSV	8	Unmodified	_SGKGLSSV_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	734.4042947441001	1	734.404295	733.397018	0.66935	0.00049157	4.1258	0.00303	4.7952	0.0035216	734.4073223537177	33.89	0.12065	33.89	33.842	33.962	0	630	64	1.2441287	0.0378263	1.2441287	253.8426	0	7.717819						166	6	2	NaN	NaN	NaN	0.84782	1	3805	3805		0.92586	0.59598	1	22341	+		24167	8470	13934	14336	19238	19238					0.019655649092442218
SGKGPAGA	8	Unmodified	_SGKGPAGA_					0	0	0			REV__ENSG00000141582|ENST00000269397|CBX4	REV__ENSG00000141582|ENST00000269397|CBX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	322.67174582275	2	322.671746	643.328939	1.7898	0.00057753	2.6697	0.00086144	4.4595	0.001439	322.67226385584115	24.164	0.096474	24.151	24.127	24.224	-0.012749	1455	40	0.7413668	0.024120152	0.73984736	303.2918	0	9.867523						89	5	2	NaN	NaN	NaN	0.84897	1	1755	1755		0.27539	0	1	10854	+		24168	9832	13935	14337	19239	19239					-0.006992599507611885
SGKGPKRD	8	Unmodified	_SGKGPKRD_					0	0	0			REV__FOXS1|p.R81S|1|0.22|ENSG00000179772|chr20:31845302-31845302|G/T|missense_variant	REV__FOXS1|p.R81S|1|0.22|ENSG00000179772|chr20:31845302-31845302|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.73540871204995	2	422.735409	843.456264	0.70897	0.00029971	4.6943	0.0019845	5.4033	0.0022842	422.7374880702136	20.911	0.14447	20.897	20.849	20.993	-0.014086	1308	79	0.83204526	0.047961593	0.8305259	338.70807	0	19.52417						330	7	3	NaN	NaN	NaN	0.84782	1	5178	5178		0.92586	0.5302	1	59948	+		24169	10811	13936	14338	19240	19240					0.028274609234131276
SGKGSSAA	8	Unmodified	_SGKGSSAA_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF;ENSG00000100297|ENST00000216122|MCM5	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.3260444230999	1	664.326044	663.318768	1.6226	0.0010779	-5.7899	-0.0038464	-4.1673	-0.0027685	664.3226057094607	39.668	0.072319	39.673	39.673	39.746	0.0053368	762	82	1.1646824	0.0488739	1.163163	238.09311	0	9.99118						172	4	3	NaN	NaN	NaN	0.84897	1	2326	2326		0.27539	0	1	13795			24170	1219	13937	14339	19241	19241					-0.026358676760082744
SGKGTAMV	8	Unmodified	_SGKGTAMV_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	750.381450812	1	750.381451	749.374174	1.6555	0.0012422	-3.8852	-0.0029154	-2.2297	-0.0016731	750.3785147608145	29.86	0.19306	29.86	29.763	29.956	0	597	76	1.2639319	0.044959188	1.2639319	257.78226	0	9.169571						142	9	2	NaN	NaN	NaN	0.8439	1	4042	4042		3.1533	0	1	11863	+		24171	13085	13938	14340	19242	19242					-0.010537774798876853
SGKKAAAG	8	Unmodified	_SGKKAAAG_					0	0	0		nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	689.3940644088	1	689.394064	688.386788	1.9379	0.001336	-7.211	-0.0049712	-5.273	-0.0036352	689.3885396775391	56.924	0.04797	56.924	56.9	56.948	0	552	49	1.2908988	0.028741598	1.2908988	263.70102	0	5.8712463						61	3	2	NaN	NaN	NaN	0.84876	1	2997	2997		0.39566	0	1	4780			24172	2472	13939	14341	19243	19243					0.03013001974659346
SGKKAAAG	8	Unmodified						0	0	0		nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	689.394064	688.386788	0.040306	2.7787E-05	-4.1818	-0.0028829	-4.1415	-0.0028551	689.3911245074097	56.923	0.047932	56.922	56.898	56.946	-0.00056458	546	49	1.294491	0.028738618	1.2929716	264.4348		5.870636	-0.0011509	0.00098776	0.0010364	NaN	0.39566	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4431.9			24173	2472	13939	14341							0.03013001974659346
SGKKRGIF	8	Unmodified	_SGKKRGIF_					0	0	0		ENST00000436788.2_1_6:119243146-119245209:-|nuORF	ENST00000436788.2_1_6:119243146-119245209:-|nuORF	ENST00000436788.2_1_6:119243146-119245209:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.5363119701001	1	892.536312	891.529036	-0.013521	-1.2068E-05	7.3555	0.0065651	7.342	0.006553	892.5428502995393	58.266	0.023952	58.266	58.242	58.266	-0.00048447	342	43	1.4161754	0.024962068	1.4146559	288.0037	0	5.076477						52	2	2	NaN	NaN	NaN	0.84692	1	5832	5832		1.4396	0	1	5338.3			24174	6996	13940	14342	19244	19244					0.07893214716841612
SGKSSAQFVL	10	Unmodified	_SGKSSAQFVL_					0	0	0			REV__ENST00000503853.1_1_5:176733373-176733568:+|nuORF	REV__ENST00000503853.1_1_5:176733373-176733568:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.27710635125	2	512.277106	1022.53966	0.926	0.00047437	1.2968	0.00066434	2.2228	0.0011387	512.2778306112904	22.139	0.14472	22.125	22.077	22.222	-0.013731	1269	85	0.8560222	0.0516454	0.85450274	347.49048	0	20.964722						204	7	2	NaN	NaN	NaN	0.62092	1	9275	9275		13.463	0.87517	1	25209	+		24175	12528	13941	14343	19245	19245					0.029291525806115715
SGLLFYIPL	9	Unmodified	_SGLLFYIPL_					0	0	0		ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.79968599055	2	511.799686	1021.58482	1.9261	0.0009858	7.1001	0.0036338	9.0263	0.0046196	511.80415349985213	27.929	0.072403	27.929	27.905	27.977	0	1299	46	0.8375814	0.027674615	0.8375814	340.0089	0	11.234283						93	4	2	NaN	NaN	NaN	0.53206	1	9448	9448		8.2903	0	1	8313.7			24176	4352	13942	14344	19246	19246					0.07489003113801118
SGLPISVTWP	10	Unmodified	_SGLPISVTWP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7898495857501	2	528.78985	1055.56515	0.71156	0.00037627	-10.183	-0.0053849	-9.4719	-0.0050087	528.7846865637415	34.106	0.12072	34.105	34.056	34.177	-0.0012474	1257	49	0.86339295	0.02948296	0.8618735	350.3369	0	11.963226						133	6	3	NaN	NaN	NaN	0.67523	1	10673	10673		9.746	0.78402	1	14535	+		24177	10837	13943	14345	19247	19247					0.03958627103043
SGLPISVTWP	10	Unmodified						0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.78985	1055.56515	0.71156	0.00037627	-10.183	-0.0053849	-9.4719	-0.0050087	528.7846865637415	34.106	0.12072	34.105	34.056	34.177	-0.0012474	1257	49	0.86339295	0.02948296	0.8618735	350.3369		11.963226	-0.001237	0.0011673	-0.00075972	NaN	9.746	133	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14535	+		24178	10837	13943	14345							0.03958627103043
SGLVPSYD	8	Unmodified	_SGLVPSYD_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.3988750152	1	837.398875	836.391599	1.1683	0.00097834	-2.0677	-0.0017315	-0.89938	-0.00075314	837.3994925541896	41.089	0.21634	41.089	41.041	41.257	0	456	61	1.348284	0.03580463	1.348284	274.4714	0	7.288788						365	10	3	NaN	NaN	NaN	0.8439	1	5217	5217		3.1533	0	1	53181	+		24179	13163	13944	14346	19248	19248					-0.033141586732313044
SGNGGSGM	8	Unmodified	_SGNGGSGM_					0	0	0		ENST00000562743.5_1_16:84766659-84767057:+|nuORF	ENST00000562743.5_1_16:84766659-84767057:+|nuORF	ENST00000562743.5_1_16:84766659-84767057:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.2511649205001	1	666.251165	665.243888	1.7217	0.0011471	5.5531	0.0036998	7.2748	0.0048469	666.2552241730934	55.076	0.072048	55.076	55.028	55.1	0	708	70	1.1972283	0.04154861	1.1972283	244.73204	0	8.493195						134	4	3	NaN	NaN	NaN	0.84727	1	2449	2449		1.2418	0	1	17216			24180	7605	13945	14347	19249	19249					-0.1021237347887336
SGPAPPLF	8	Unmodified	_SGPAPPLF_					0	0	0			REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4192165268	1	785.419217	784.41194	0.96401	0.00075715	6.0737	0.0047704	7.0377	0.0055275	785.4233456741963	33.358	0.19302	33.355	33.307	33.5	-0.0024796	462	112	1.3447032	0.06631994	1.3431838	274.0355	0	13.515259						418	9	3	NaN	NaN	NaN	0.76633	1	4469	4469		13.737	0	1	49409	+		24181	11645	13946	14348	19250	19250					0.011110567772334434
SGPAPPLF	8	Unmodified						0	0	0			REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.419217	784.41194	1.1586	0.00090995	5.5381	0.0043497	6.6966	0.0052597	785.4229035230402	33.359	0.16895	33.359	33.311	33.48	0	465	121	1.3429124	0.07170868	1.3429124	273.67056		14.613434	0.0019127	-0.00019234	-0.00013564	NaN	13.737	407	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50251	+		24182	11645	13946	14348							0.011110567772334434
SGPAPPLF	8	Unmodified						0	0	0			REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	REV__ENST00000299954.13_1_17:65373425-65373680:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	785.419217	784.41194	0.96401	0.00075715	6.0737	0.0047704	7.0377	0.0055275	785.4233456741963	33.358	0.19302	33.355	33.307	33.5	-0.0024796	462	112	1.3447032	0.06631994	1.3431838	274.0355		13.515259	-0.0019127	0.00022835	0.00013564	NaN	13.737	418	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49409	+		24183	11645	13946	14348							0.011110567772334434
SGPATPMF	8	Unmodified	_SGPATPMF_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9;DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;ENST00000581682.1_1_17:11787806-11828539:+|nuORF	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.3705517747002	1	807.370552	806.363275	2.1597	0.0017437	4.8956	0.0039526	7.0553	0.0056962	807.3747041845673	29.98	0.12071	29.98	29.956	30.077	0	519	49	1.310647	0.028704882	1.310647	266.97015	0	5.846985						113	6	2	NaN	NaN	NaN	0.82332	1	4837	4837		6.0903	0.62448	1	10383			24184	356	13947	14349	19251	19251					-0.047651798541551216
SGPNAGKR	8	Unmodified	_SGPNAGKR_					0	0	0		tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	tr|U7SKN6|U7SKN6_FUSNUPyridoxamine5'-phosphateoxidaseputativedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02089PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.4216761428	1	786.421676	785.4144	1.2142	0.00095487	-4.1227	-0.0032422	-2.9085	-0.0022873	786.4186469410972	34.927	0.1205	34.927	34.903	35.023	0	501	70	1.3214091	0.04122579	1.3214091	269.28253	0	8.401184						173	6	2	NaN	NaN	NaN	0.84455	1	4570	4570		2.7852	0	1	14315			24185	13756	13948	14350	19252	19252					0.013109052348909245
SGPPPLSHR	9	Unmodified	_SGPPPLSHR_					0	0	0			REV__ENST00000336273.7_1_8:98656420-98656720:+|nuORF	REV__ENST00000336273.7_1_8:98656420-98656720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.2565082949	2	474.256508	946.498464	0.85218	0.00040415	-2.4109	-0.0011434	-1.5587	-0.00073922	474.2553778181735	12.868	0.19218	12.868	12.82	13.012	0	1359	43	0.8006399	0.025887072	0.8006399	325.35538	0	10.519684						231	9	3	NaN	NaN	NaN	0.49672	1	6997	6997		9.746	0.62279	1	33986	+		24186	11762	13949	14351	19253	19253					0.023074363318073665
SGPSIVHR	8	Unmodified	_SGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.737951401	2	426.737951	851.46135	0.8333	0.0003556	-1.5881	-0.00067769	-0.75477	-0.00032209	426.73707569555785	12.604	0.14404	12.604	12.556	12.7	0	1401	37	0.77473325	0.022222579	0.77473325	315.33014	0	9.044983						118	7	3	NaN	NaN	NaN	0.43738	1	5408	5408		34.439	15.32	1	10302			24187	841	13950	14352	19254	19254					0.029677647860353318
SGPSIVHR	8	Unmodified	_SGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.737951401	2	426.737951	851.46135	0.89602	0.00038237	-0.66334	-0.00028307	0.23269	9.9296E-05	426.73761172275795	12.58	0.21612	12.58	12.556	12.772	0	1530	52	0.6949163	0.031627536	0.6949163	282.84323	0	12.872986						246	10	3	NaN	NaN	NaN	0.47456	1	5409	5409		32.453	18.411	1	35436			24188	841	13950	14352	19255	19255					0.029677647860353318
SGPSIVHR	8	Unmodified	_SGPSIVHR_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.737951401	2	426.737951	851.46135	0.76015	0.00032438	-1.1737	-0.00050086	-0.41354	-0.00017647	426.7375386152201	12.63	0.19222	12.621	12.549	12.741	-0.0088415	1530	52	0.6949163	0.031627536	0.69339687	282.84323	0	12.872986						249	9	3	NaN	NaN	NaN	0.5868	1	5276	5276		26.115	12.073	1	35366			24189	841	13950	14352	19256	19256					0.029677647860353318
SGQAFELIL	9	Unmodified	_SGQAFELIL_					0	0	0		ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000104435|ENST00000220876|STMN2	ENSG00000104435|ENST00000220876|STMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5302235392002	1	977.530224	976.522947	1.2318	0.0012041	0.1986	0.00019414	1.4304	0.0013983	977.5304194484872	32.2	0.19304	32.196	32.148	32.341	-0.0037613	258	103	1.4660252	0.060422778	1.4645058	297.74686	0	12.271759						470	9	4	NaN	NaN	NaN	0.059222	1	7640	7640		42.995	3.536	1	71965			24190	1476	13951	14353	19257	19257					0.03374651694673503
SGQAFELIL	9	Unmodified						0	0	0		ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000104435|ENST00000220876|STMN2	ENSG00000104435|ENST00000220876|STMN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	977.530224	976.522947	1.5919	0.0015561	0.87875	0.000859	2.4707	0.0024151	977.5311422276502	32.201	0.19308	32.201	32.152	32.345	0	261	100	1.4642475	0.058642507	1.4642475	297.3858		11.910187	0.0024428	0.00035727	-0.00012918	NaN	42.995	449	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69451			24191	1476	13951	14353							0.03374651694673503
SGQGPGPP	8	Unmodified	_SGQGPGPP_					0	0	0		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.331129801	1	696.33113	695.323853	1.4523	0.0010113	-5.8463	-0.004071	-4.3941	-0.0030597	696.3284119175148	24.357	0.072401	24.344	24.32	24.393	-0.012747	1065	40	0.9808926	0.023786128	0.97937316	200.33487	0	4.8580017						57	4	2	NaN	NaN	NaN	0.84727	1	3076	3076		1.2418	0	1	4606.5			24192	491	13952	14354	19258	19258					-0.03599563813384066
SGQIPTEGLL	10	Unmodified	_SGQIPTEGLL_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5466018849	1	1014.5466	1013.53933	1.6483	0.0016723	-0.72843	-0.00073903	0.91991	0.00093329	1014.5451008910253	34.203	0.12061	34.203	34.179	34.3	0	192	61	1.5050892	0.0354712	1.5050892	305.52527	0	7.20047						96	6	2	NaN	NaN	NaN	0.62092	1	9130	9130		13.463	0.46021	1	8780.7	+		24193	8623	13953	14355	19259	19259					0.033097328607595955
SGQIPTEGLL	10	Unmodified						0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1014.5466	1013.53933	1.6483	0.0016723	-0.72843	-0.00073903	0.91991	0.00093329	1014.5451008910253	34.203	0.12061	34.203	34.179	34.3	0	192	61	1.5050892	0.0354712	1.5050892	305.52527		7.20047	0.0011668	0.00045912	0.00075972	NaN	13.463	96	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8780.7	+		24194	8623	13953	14355							0.033097328607595955
SGQIPTEGLL	10	Unmodified						0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1014.5466	1013.53933	1.5899	0.001613	-1.632	-0.0016558	-0.042111	-4.2724E-05	1014.543687276557	34.202	0.096531	34.201	34.177	34.274	-0.0012474	192	46	1.5050892	0.02660203	1.5035697	305.52527		5.400055	-0.0011668	-0.00045762	-0.00075972	NaN	13.463	119	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8788.6	+		24195	8623	13953	14355							0.033097328607595955
SGQWVYLL	8	Unmodified	_SGQWVYLL_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.5090941666	1	965.509094	964.501818	1.8944	0.001829	1.1722	0.0011318	3.0666	0.0029608	965.510583711888	26.408	0.12069	26.408	26.384	26.505	0	240	58	1.4766881	0.03376031	1.4766881	299.96448	0	6.8578186						150	6	3	NaN	NaN	NaN	0.528	1	7469	7469		29.598	0.9318	1	13411	+		24196	9441	13954	14356	19260	19260					0.01814686385796449
SGRAGGAA	8	Unmodified	_SGRAGGAA_					0	0	0			REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3267131250999	1	646.326713	645.319437	1.8778	0.0012136	-4.6301	-0.0029926	-2.7524	-0.0017789	646.3234991645127	30.342	0.24133	30.342	30.294	30.535	0	702	115	1.2008407	0.06869352	1.2008407	245.62314	0	14.050751						417	11	3	NaN	NaN	NaN	0.84945	1	1930	1930		0	0	1	65658	+		24197	11395	13955	14357	19261	19261					-0.01741028236301645
SGRAGGAA	8	Unmodified	_SGRAGGAA_					0	0	0			REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.3267131250999	1	646.326713	645.319437	1.3823	0.00089344	-5.0901	-0.0032899	-3.7078	-0.0023964	646.3233592343878	30.341	0.26541	30.335	30.287	30.552	-0.0064106	699	94	1.2026466	0.05601847	1.2011272	245.99252	0	11.458145						385	12	3	NaN	NaN	NaN	0.84945	1	1838	1838		0	0	1	69701	+		24198	11395	13955	14357	19262	19262					-0.01741028236301645
SGRAGGAA	8	Unmodified						0	0	0			REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	646.326713	645.319437	1.8778	0.0012136	-4.6301	-0.0029926	-2.7524	-0.0017789	646.3234991645127	30.342	0.24133	30.342	30.294	30.535	0	702	115	1.2008407	0.06869352	1.2008407	245.62314		14.050751	0.0036985	0.00015143	-0.00014322	NaN	0	417	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65658	+		24199	11395	13955	14357							-0.01741028236301645
SGRAGGAA	8	Unmodified						0	0	0			REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	REV__ENST00000452361.5_1_2:74684918-74687805:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	646.326713	645.319437	1.3823	0.00089344	-5.0901	-0.0032899	-3.7078	-0.0023964	646.3233592343878	30.341	0.26541	30.335	30.287	30.552	-0.0064106	699	94	1.2026466	0.05601847	1.2011272	245.99252		11.458145	-0.0036985	-0.00014586	0.00014322	NaN	0	385	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69701	+		24200	11395	13955	14357							-0.01741028236301645
SGRGGGGG	8	Unmodified	_SGRGGGGG_					0	0	0			REV__ENST00000579055.5_1_17:72281302-72310327:+|nuORF	REV__ENST00000579055.5_1_17:72281302-72310327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.2797629325	1	604.279763	603.272486	1.4836	0.00089654	-7.4504	-0.0045021	-5.9667	-0.0036056	604.2718905297752	29.908	0.096508	29.908	29.884	29.98	0	1188	73	0.90571284	0.044090807	0.90571284	185.52446	0	9.031479						162	5	3	NaN	NaN	NaN	0.84945	1	675	675		0	0	1	12968	+	+	24201	8261	13956	14358	19263	19263					-0.04501887787432679
SGRGRPKQKK	10	Unmodified	_SGRGRPKQKK_					0	0	0			REV__ENST00000297338.6_1_8:117866671-117868407:-|nuORF	REV__ENST00000297338.6_1_8:117866671-117868407:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.23526747196667	3	381.235267	1140.68397	1.532	0.00058406	0.60536	0.00023078	2.1374	0.00081484	381.2362084043906	15.558	0.16815	15.558	15.414	15.582	0	1476	40	0.72837335	0.024141133	0.72837335	442.89453	0	14.67926						95	8	2	NaN	NaN	NaN	0.77514	1	14487	14487		1.6985	0.36732	1	7851.2	+		24202	11637	13957	14359	19264	19264					0.11925838851266235
SGRGRPKQKK	10	Unmodified						0	0	0			REV__ENST00000297338.6_1_8:117866671-117868407:-|nuORF	REV__ENST00000297338.6_1_8:117866671-117868407:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	381.235267	1140.68397	1.532	0.00058406	0.60536	0.00023078	2.1374	0.00081484	381.2362084043906	15.558	0.16815	15.558	15.414	15.582	0	1476	40	0.72837335	0.024141133	0.72837335	442.89453		14.67926	0	0	0	NaN	1.6985	95	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7851.2	+		24203	11637	13957	14359							0.11925838851266235
SGRGSHAA	8	Unmodified	_SGRGSHAA_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3590758859999	1	742.359076	741.351799	0.63685	0.00047277	-1.5992	-0.0011872	-0.96234	-0.0007144	742.3567559216236	31.38	0.096535	31.38	31.308	31.404	0	1347	82	0.8080346	0.049879134	0.8080346	164.83284	0	10.174957						129	5	2	NaN	NaN	NaN	0.84945	1	3931	3931		0	0	1	9514.9			24204	3295	13958	14360	19265	19265					-0.029222408332998384
SGRRMVLPV	9	Unmodified	_SGRRMVLPV_					0	0	0			REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7974860401	2	507.797486	1013.58042	1.6434	0.00083453	-5.6376	-0.0028628	-3.9942	-0.0020282	507.79553048219606	14.356	0.047894	14.345	14.321	14.369	-0.011218	1305	37	0.83389086	0.022143304	0.8323714	338.54636	0	8.989838						44	3	2	NaN	NaN	NaN	0.55027	1	8961	8961		7.5404	0.67717	1	3947.7	+		24205	12333	13959	14361	19266	19266					0.07417215419241074
SGRRMVLPV	9	Unmodified						0	0	0			REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.797486	1013.58042	1.7913	0.00090963	-5.923	-0.0030077	-4.1317	-0.0020981	507.7943478574672	14.333	0.096039	14.333	14.309	14.405	0	1302	28	0.8357362	0.016608357	0.8357362	339.29553		6.742737	-0.0059209	-9.0409E-05	0.0016824	NaN	7.5404	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3936	+		24206	12333	13959	14361							0.07417215419241074
SGRRMVLPV	9	Unmodified						0	0	0			REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	REV__ENST00000473034.5_1_2:219533245-219536693:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	507.797486	1013.58042	1.6434	0.00083453	-5.6376	-0.0028628	-3.9942	-0.0020282	507.79553048219606	14.356	0.047894	14.345	14.321	14.369	-0.011218	1305	37	0.83389086	0.022143304	0.8323714	338.54636		8.989838	0.0059209	0.00019941	-0.0016824	NaN	7.5404	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3947.7	+		24207	12333	13959	14361							0.07417215419241074
SGRWWGNSCKE	11	Unmodified	_SGRWWGNSCKE_					0	0	0			REV__NCK2|p.D146N|1|0.32|ENSG00000071051|chr2:105881537-105881537|G/A|missense_variant	REV__NCK2|p.D146N|1|0.32|ENSG00000071051|chr2:105881537-105881537|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.29075343025	2	655.290753	1308.56695	1.2031	0.00078835	-10.616	-0.0069568	-9.4133	-0.0061684	655.2849074001683	23.899	0.096369	23.886	23.813	23.91	-0.01305	1125	76	0.9442611	0.04585117	0.94274163	382.19507	0	18.558502						224	5	4	NaN	NaN	NaN	0.6875	1	18068	18068		8.2775	1.4143	1	37896	+		24208	13266	13960	14362	19267	19267					-0.07498687150655314
SGSGGVHV	8	Unmodified	_SGSGGVHV_					0	0	0			REV__ENST00000420095.1_1_3:8263573-8263864:-|nuORF	REV__ENST00000420095.1_1_3:8263573-8263864:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3420288383	1	699.342029	698.334752	1.2367	0.00086486	-8.5044	-0.0059475	-7.2678	-0.0050827	699.3363660935579	47.54	0.14375	47.54	47.468	47.612	0	720	37	1.1900014	0.02168572	1.1900014	243.02248	0	4.42865						97	7	2	NaN	NaN	NaN	0.84207	1	3189	3189		3.5732	3.1776	1	6927.2	+		24209	12104	13961	14363	19268	19268					-0.02648161439094565
SGSGGYIG	8	Unmodified	_SGSGGYIG_					0	0	0			REV__CON__P07744	REV__CON__P07744	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3151453858002	1	697.315145	696.307869	1.1651	0.00081241	5.2995	0.0036954	6.4645	0.0045078	697.3189843988511	39.813	0.048244	39.819	39.795	39.843	0.0060463	693	55	1.2062578	0.032490373	1.2047384	246.3561	0	6.635544						59	3	2	NaN	NaN	NaN	0.84876	1	3096	3096		0.39566	0	1	5018.5	+	+	24210	8263	13962	14364	19269	19269					-0.052432700502663465
SGSGSATV	8	Unmodified	_SGSGSATV_					0	0	0			REV__nc|ENSG00000123612|Q8NER5-4|ACVR1C	REV__nc|ENSG00000123612|Q8NER5-4|ACVR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3100600079001	1	665.31006	664.302784	1.7661	0.001175	7.1386	0.0047494	8.9047	0.0059244	665.3147176453402	22.042	0.096407	22.029	22.029	22.125	-0.013731	744	43	1.1755381	0.02531898	1.1740186	240.30505	0	5.1757355						88	5	2	NaN	NaN	NaN	0.84727	1	2343	2343		1.2418	0	1	7057	+		24211	9362	13963	14365	19270	19270					-0.04279573912890555
SGSGSSGK	8	Unmodified	_SGSGSSGK_					0	0	0			REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.65629272380005	2	333.656293	665.298033	1.4526	0.00048468	6.0122	0.002006	7.4649	0.0024907	333.65834020220626	34.998	0.072357	34.998	34.926	34.998	-4.5776E-05	1530	85	0.6949163	0.05206132	0.69339687	284.0942	0	21.2836						112	4	2	NaN	NaN	NaN	0.84887	1	2374	2374		0.32989	0	1	27778	+		24212	9908	13964	14366	19271	19271					-0.04800458055649415
SGSGSSGK	8	Unmodified						0	0	0			REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.656293	665.298033	1.1158	0.0003723	5.0677	0.0016909	6.1835	0.0020632	333.65811840536827	34.999	0.1205	34.999	34.903	35.023	0	1533	61	0.6930556	0.03721088	0.6930556	283.33356		15.212463	0.00074486	-0.00033224	-0.0001706	NaN	0.32989	150	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34290	+		24213	9908	13964	14366							-0.04800458055649415
SGSGSSGK	8	Unmodified						0	0	0			REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	REV__ENST00000473452.1_1_3:36527678-36547327:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	333.656293	665.298033	1.4526	0.00048468	6.0122	0.002006	7.4649	0.0024907	333.65834020220626	34.998	0.072357	34.998	34.926	34.998	-4.5776E-05	1530	85	0.6949163	0.05206132	0.69339687	284.0942		21.2836	-0.00074486	0.00029808	0.0001706	NaN	0.32989	112	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27778	+		24214	9908	13964	14366							-0.04800458055649415
SGSGYGGV	8	Unmodified	_SGSGYGGV_					0	0	0		ENSG00000185069|ENST00000332411|KRT76;CON__Q01546	ENSG00000185069|ENST00000332411|KRT76	ENSG00000185069|ENST00000332411|KRT76	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15338589410004	2	342.153386	682.292219	1.5692	0.00053692	4.5071	0.0015421	6.0763	0.002079	342.1552095935445	30.391	0.16893	30.391	30.366	30.535	0	1497	40	0.71537006	0.024162114	0.71537006	292.30975	0	9.872986						117	8	2	NaN	NaN	NaN	0.84887	1	2880	2880		0.32989	0	1	11276		+	24215	204	13965	14367	19272	19272					-0.06163556567321393
SGSHAPLL	8	Unmodified	_SGSHAPLL_					0	0	0		nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.4202791593001	1	781.420279	780.413003	1.6553	0.0012935	-9.1518	-0.0071514	-7.4964	-0.0058579	781.4128093829146	29.353	0.19304	29.353	29.28	29.474	0	477	106	1.3357477	0.06275511	1.3357477	272.23453	0	12.789917						480	9	3	NaN	NaN	NaN	0.79379	1	4495	4495		10.052	0	1	63106			24216	7903	13966	14368	19273	19273					0.014012711461418803
SGSHAPLL	8	Unmodified	_SGSHAPLL_					0	0	0		nc|ENSG00000061273|Q8WUI4-8|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-8|HDAC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.4202791593001	1	781.420279	780.413003	1.4024	0.0010959	-9.6102	-0.0075096	-8.2077	-0.0064137	781.4131173310179	29.352	0.21718	29.344	29.272	29.489	-0.0077209	477	103	1.3357477	0.060958862	1.3342283	272.23453	0	12.423828						501	10	3	NaN	NaN	NaN	0.80071	1	4414	4414		9.1232	0	1	66940			24217	7903	13966	14368	19274	19274					0.014012711461418803
SGSHFCGG	8	Unmodified	_SGSHFCGG_					0	0	0		CON__P00761;nc|ENSG00000010438|P35030-5|PRSS3;ENSG00000010438|ENST00000379405|PRSS3;nc|ENSG00000010438|P35030-2|PRSS3;nc|ENSG00000010438|P35030-4|PRSS3;ENST00000290968.4_7:142478839-142482361:+|nuORF;nc|ENSG00000010438|P35030|PRSS3	CON__P00761	CON__P00761	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.2827993999001	1	751.282799	750.275523	1.0354	0.00077791	-4.7132	-0.0035409	-3.6778	-0.002763	751.2791652236641	31.815	0.19309	31.815	31.742	31.935	0	612	130	1.2549332	0.07740438	1.2549332	255.94144	0	15.786484						358	9	2	NaN	NaN	NaN	0.82332	1	4054	4054		6.0903	2.5171	1	31086		+	24218	184	13967	14369	19275	19275					-0.1096038072491865
SGSHGSLL	8	Unmodified	_SGSHGSLL_					0	0	0		ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.383893653	1	757.383894	756.376617	1.9576	0.0014827	-7.3923	-0.0055988	-5.4347	-0.0041162	757.3789006195393	23.32	0.12054	23.32	23.296	23.417	0	555	46	1.2891023	0.026946783	1.2891023	262.8721	0	5.494934						78	6	2	NaN	NaN	NaN	0.82332	1	4173	4173		6.0903	0	1	5836.6			24219	3168	13968	14370	19276	19276					-0.011316057505837307
SGSLSSGL	8	Unmodified	_SGSLSSGL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3570102005002	1	707.35701	706.349734	0.98685	0.00069806	5.3895	0.0038123	6.3763	0.0045103	707.3613052953257	29.305	0.12063	29.305	29.256	29.377	0	717	52	1.1918083	0.030716538	1.1918083	243.33833	0	6.2715454						88	6	2	NaN	NaN	NaN	0.8439	1	3333	3333		3.1533	0	1	5809.7			24220	835	13969	14371	19277	19277					-0.015187143617367838
SGSPPPDG	8	Unmodified	_SGSPPPDG_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.3100600079	1	713.31006	712.302784	0.9002	0.00064212	6.6229	0.0047242	7.5231	0.0053663	713.3150286970227	37.504	0.31291	37.506	37.434	37.747	0.0028229	720	61	1.1900014	0.03614676	1.1884819	242.93074	0	7.37912						276	14	2	NaN	NaN	NaN	0.8439	1	3401	3401		3.1533	0	1	25110			24221	5875	13970	14372	19278	19278					-0.06487573912897915
SGSRSGAG	8	Unmodified	_SGSRSGAG_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.3165423693001	1	678.316542	677.309266	2.1297	0.0014446	-7.1096	-0.0048226	-4.98	-0.003378	678.3118891035158	17.141	0.64762	17.141	16.997	17.645	0	693	133	1.2062578	0.07953143	1.2062578	246.48936	0	16.251617						1198	28	4	NaN	NaN	NaN	0.84782	1	2787	2787		0.92586	0	1	362100	+		24222	10157	13971	14373	19279	19279					-0.04229635961519307
SGSSGPDLI	9	Unmodified	_SGSSGPDLI_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4046886746002	1	832.404689	831.397412	1.2729	0.0010595	-3.2064	-0.002669	-1.9335	-0.0016095	832.4020372860109	26.722	0.096529	26.711	26.687	26.783	-0.010645	435	49	1.360811	0.02862537	1.3592916	277.04843	0	5.827881						84	5	2	NaN	NaN	NaN	0.45297	1	5032	5032		11.548	0	1	6784.6	+		24223	10392	13972	14374	19280	19280					-0.025030601615526393
SGSSGPDLI	9	Unmodified						0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	832.404689	831.397412	1.7047	0.001419	-3.6165	-0.0030104	-1.9119	-0.0015914	832.4012612084884	26.698	0.12115	26.698	26.674	26.795	0	438	52	1.359022	0.030412912	1.359022	276.68423		6.1917725	-0.0065755	-0.00020259	-0.00013478	NaN	11.548	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8490.8	+		24224	10392	13972	14374							-0.025030601615526393
SGSSGPDLI	9	Unmodified						0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	832.404689	831.397412	1.2729	0.0010595	-3.2064	-0.002669	-1.9335	-0.0016095	832.4020372860109	26.722	0.096529	26.711	26.687	26.783	-0.010645	435	49	1.360811	0.02862537	1.3592916	277.04843		5.827881	0.0065755	0.00013879	0.00013478	NaN	11.548	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6784.6	+		24225	10392	13972	14374							-0.025030601615526393
SGSSSTFG	8	Unmodified	_SGSSSTFG_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.15612554830005	2	365.156126	728.297698	1.071	0.00039107	-0.47783	-0.00017448	0.59313	0.00021659	365.1556820029258	41.833	0.14411	41.842	41.842	41.986	0.0089951	1494	49	0.7172283	0.029720247	0.71570885	292.7058	0	12.129028						98	7	2	NaN	NaN	NaN	0.84727	1	3655	3655		1.2418	0	1	10952			24226	780	13973	14375	19281	19281					-0.07731877775506746
SGSSSTGK	8	Unmodified	_SGSSSTGK_					0	0	0			REV__ENST00000480945.5_1_1:15970086-15976227:+|nuORF	REV__ENST00000480945.5_1_1:15970086-15976227:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3315237315002	1	710.331524	709.324247	0.99985	0.00071023	-4.1797	-0.002969	-3.1798	-0.0022587	710.3287666921067	39.813	0.096493	39.819	39.746	39.843	0.0060463	735	55	1.1809633	0.032542586	1.1794438	241.10481	0	6.64386						115	5	2	NaN	NaN	NaN	0.84455	1	3343	3343		2.7852	1.5433	1	10070	+		24227	12380	13974	14376	19282	19282					-0.042041888841708897
SGSSSTGK	8	Unmodified						0	0	0			REV__ENST00000480945.5_1_1:15970086-15976227:+|nuORF	REV__ENST00000480945.5_1_1:15970086-15976227:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.331524	709.324247	0.99985	0.00071023	-4.1797	-0.002969	-3.1798	-0.0022587	710.3287666921067	39.813	0.096493	39.819	39.746	39.843	0.0060463	735	55	1.1809633	0.032542586	1.1794438	241.10481		6.64386	0.014056	-0.00024216	0.00014438	NaN	2.7852	115	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10070	+		24228	12380	13974	14376							-0.042041888841708897
SGTHSKQCVQ	10	Unmodified	_SGTHSKQCVQ_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|37|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|37|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|37|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.75347246695	2	537.753472	1073.49239	1.0736	0.00057735	-7.67	-0.0041246	-6.5964	-0.0035472	538.2501196721026	34.829	0.14465	34.828	34.804	34.949	-0.0006485	1266	61	0.85786515	0.03685367	0.8563457	348.01904	0	14.950775						250	7	4	NaN	NaN	NaN	0.5358	1	11389	11389		17.97	3.9281	1	18749			24229	7855	13975	14377	19283	19283					-0.04141449962025945
SGTQNFLL	8	Unmodified	_SGTQNFLL_					0	0	0			REV__nc|ENSG00000012223|P02788-2|LTF	REV__nc|ENSG00000012223|P02788-2|LTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4570585961002	1	879.457059	878.449782	1.9323	0.0016994	0.77916	0.00068524	2.7115	0.0023846	879.4566638519059	30.004	0.21722	30.004	29.908	30.125	0	357	73	1.407258	0.04280126	1.407258	286.25497	0	8.706329						276	10	3	NaN	NaN	NaN	0.63138	1	5780	5780		23.334	0	1	24520	+		24230	8410	13976	14378	19284	19284					0.00569522972057257
SGTQNFLL	8	Unmodified						0	0	0			REV__nc|ENSG00000012223|P02788-2|LTF	REV__nc|ENSG00000012223|P02788-2|LTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	879.457059	878.449782	1.9323	0.0016994	0.77916	0.00068524	2.7115	0.0023846	879.4566638519059	30.004	0.21722	30.004	29.908	30.125	0	357	73	1.407258	0.04280126	1.407258	286.25497		8.706329	0.0036629	-0.00051389	0.00075972	NaN	23.334	276	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24520	+		24231	8410	13976	14378							0.00569522972057257
SGTQNFLL	8	Unmodified						0	0	0			REV__nc|ENSG00000012223|P02788-2|LTF	REV__nc|ENSG00000012223|P02788-2|LTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	879.457059	878.449782	0.96784	0.00085117	1.8811	0.0016543	2.8489	0.0025055	879.4580323667111	30.004	0.3137	29.997	29.925	30.238	-0.0064106	357	82	1.407258	0.048153877	1.4057386	286.25497		9.7951355	-0.0036629	0.00045521	-0.00075972	NaN	23.334	350	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29135	+		24232	8410	13976	14378							0.00569522972057257
SGVGKGKS	8	Unmodified	_SGVGKGKS_					0	0	0			REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.4046290951	1	719.404629	718.397353	0.97428	0.0007009	-5.7979	-0.004171	-4.8236	-0.0034701	719.4003129036871	29.304	0.14478	29.296	29.248	29.393	-0.0077229	564	88	1.2837118	0.052141547	1.2821923	262.0192	0	10.642654						227	7	3	NaN	NaN	NaN	0.84782	1	3501	3501		0.92586	0	1	27063	+		24233	8327	13977	14379	19285	19285					0.026889846290828245
SGVGKGKS	8	Unmodified						0	0	0			REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.404629	718.397353	1.1016	0.00079251	-5.6747	-0.0040824	-4.5731	-0.0032899	719.4004293996817	29.305	0.12063	29.305	29.256	29.377	0	567	91	1.2819146	0.05393088	1.2819146	261.65237		11.007874	0.0042443	4.0756E-05	-0.00013889	NaN	0.92586	248	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26079	+		24234	8327	13977	14379							0.026889846290828245
SGVGKGKS	8	Unmodified						0	0	0			REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	REV__ENST00000530973.1_1_11:65108994-65113348:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.404629	718.397353	0.97428	0.0007009	-5.7979	-0.004171	-4.8236	-0.0034701	719.4003129036871	29.304	0.14478	29.296	29.248	29.393	-0.0077229	564	88	1.2837118	0.052141547	1.2821923	262.0192		10.642654	-0.0042443	-4.7865E-05	0.00013889	NaN	0.92586	227	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27063	+		24235	8327	13977	14379							0.026889846290828245
SGVSQGFE	8	Unmodified	_SGVSQGFE_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	810.3628238599001	1	810.362824	809.355547	1.3589	0.0011012	4.3099	0.0034925	5.6688	0.0045938	810.3657218665869	28.145	0.096577	28.137	28.112	28.209	-0.0089798	504	88	1.3196158	0.052013636	1.3180964	268.7804	0	10.594208						153	5	3	NaN	NaN	NaN	0.77489	1	4782	4782		12.588	0	1	13171			24236	585	13978	14380	19286	19286					-0.0567561585007752
SGVTGTIG	8	Unmodified	_SGVTGTIG_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	691.3620955784002	1	691.362096	690.354819	1.5105	0.0010443	3.1965	0.0022099	4.707	0.0032543	691.3650884130453	34.228	0.096558	34.228	34.228	34.324	0	780	58	1.1538198	0.034392715	1.1538198	235.68578	0	7.0252533						59	5	2	NaN	NaN	NaN	0.84887	1	3043	3043		0.32989	0	1	3331.9			24237	5930	13979	14381	19287	19287					-0.002744104991279528
SGYGGLGG	8	Unmodified	_SGYGGLGG_					0	0	0			REV__ENSG00000132424|ENST00000369239|PNISR	REV__ENSG00000132424|ENST00000369239|PNISR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	334.15592858305007	2	334.155929	666.297304	1.1515	0.00038479	5.2746	0.0017625	6.4261	0.0021473	334.1582524631559	32.32	0.19306	32.316	32.268	32.461	-0.0037613	1509	58	0.70793515	0.035313904	0.7064157	289.40784	0	14.436523						192	9	3	NaN	NaN	NaN	0.84876	1	2390	2390		0.39566	0	1	21075	+		24238	9535	13980	14382	19288	19288					-0.04919252704689825
SHAAAKGG	8	Unmodified	_SHAAAKGG_					0	0	0			REV__ENST00000592675.1_1_19:11304063-11306346:-|nuORF	REV__ENST00000592675.1_1_19:11304063-11306346:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.3580132535001	1	698.358013	697.350737	0.52116	0.00036396	7.2268	0.0050469	7.748	0.0054109	698.366152950966	41.017	0.072075	41.017	40.993	41.065	0	714	52	1.1936152	0.030709863	1.1936152	243.76704	0	6.271759						76	4	2	NaN	NaN	NaN	0.84887	1	3174	3174		0.32989	0	1	8060.3	+		24239	12930	13981	14383	19289	19289					-0.01004455202189547
SHALGAKK	8	Unmodified	_SHALGAKK_					0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.2428696034	2	406.24287	810.471186	1.2967	0.00052677	-2.4035	-0.00097639	-1.1068	-0.00044962	406.24193005212067	15.582	0.12008	15.582	15.558	15.678	0	1446	40	0.7469324	0.024112344	0.7469324	304.25833	0	9.8220215						106	6	3	NaN	NaN	NaN	0.8439	1	4900	4900		3.1533	0	1	11366	+		24240	10875	13982	14384	19290	19290					0.058369527914123864
SHALGAKK	8	Unmodified	_SHALGAKK_					0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.2428696034	2	406.24287	810.471186	1.6334	0.00066358	-1.6522	-0.00067119	-0.018743	-7.6142E-06	406.24200591515705	15.58	0.095883	15.568	15.544	15.64	-0.012201	1443	43	0.7487872	0.025962949	0.7472678	305.01385	0	10.575836						104	5	3	NaN	NaN	NaN	0.8439	1	4800	4800		3.1533	0	1	12704	+		24241	10875	13982	14384	19291	19291					0.058369527914123864
SHALGAKK	8	Unmodified						0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	406.24287	810.471186	1.2967	0.00052677	-2.4035	-0.00097639	-1.1068	-0.00044962	406.24193005212067	15.582	0.12008	15.582	15.558	15.678	0	1446	40	0.7469324	0.024112344	0.7469324	304.25833		9.8220215	0.00711	-0.0003375	-0.00016768	NaN	3.1533	106	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11366	+		24242	10875	13982	14384							0.058369527914123864
SHALGAKK	8	Unmodified						0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	406.24287	810.471186	1.6334	0.00066358	-1.6522	-0.00067119	-0.018743	-7.6142E-06	406.24200591515705	15.58	0.095883	15.568	15.544	15.64	-0.012201	1443	43	0.7487872	0.025962949	0.7472678	305.01385		10.575836	-0.00711	0.0002729	0.00016768	NaN	3.1533	104	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12704	+		24243	10875	13982	14384							0.058369527914123864
SHALIKSLF	9	Unmodified	_SHALIKSLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.30038448230005	2	508.300384	1014.58622	1.7205	0.00087455	-3.2382	-0.001646	-1.5176	-0.00077141	508.29860579318205	21.44	0.16875	21.44	21.392	21.561	0	1296	61	0.8394264	0.036901534	0.8394264	340.78915	0	14.981232						204	8	3	NaN	NaN	NaN	0.40649	1	9167	9167		13.463	7.2128	1	32996			24244	2576	13983	14385	19292	19292					0.07950637202566213
SHALIKSLF	9	Unmodified	_SHALIKSLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.30038448230005	2	508.300384	1014.58622	1.9089	0.00097031	-3.8936	-0.0019791	-1.9847	-0.0010088	508.2973723774728	21.609	0.024164	21.595	21.571	21.595	-0.013897	1293	40	0.84127116	0.023979485	0.8397517	341.5381	0	9.735138						36	2	2	NaN	NaN	NaN	0.10945	1	8992	8992		34.454	17.87	1	3759			24245	2576	13983	14385	19293	19293					0.07950637202566213
SHALIKSLF	9	Unmodified	_SHALIKSLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.30038448230005	2	508.300384	1014.58622	1.4993	0.0007621	1.3193	0.00067058	2.8186	0.0014327	508.3012992129441	21.802	0.31304	21.788	21.643	21.956	-0.013895	1284	85	0.8468043	0.051639795	0.8452849	343.7844	0	20.96463						640	14	5	NaN	NaN	NaN	0.032021	1	8993	8993		56.466	25.855	1	194570			24246	2576	13983	14385	19294	19294					0.07950637202566213
SHALIKSLF	9	Unmodified						0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.300384	1014.58622	2.1906	0.0011135	-0.08026	-4.0796E-05	2.1104	0.0010727	508.30047241753124	21.778	0.21683	21.778	21.73	21.946	0	1281	70	0.84864825	0.042406917	0.84864825	344.53302		17.216309	-0.0050263	-0.00068306	0.0016817	NaN	56.466	380	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164650			24247	2576	13983	14385							0.07950637202566213
SHAPDILSI	9	Unmodified	_SHAPDILSI_					0	0	0			REV__ENST00000202917.9_1_12:113357194-113357533:+|nuORF	REV__ENST00000202917.9_1_12:113357194-113357533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.75854945735006	2	476.758549	951.502546	1.8519	0.00088292	-2.0825	-0.00099283	-0.23053	-0.00010991	476.7578710890034	23.393	0.19295	23.393	23.345	23.538	0	1326	55	0.8209676	0.033247292	0.8209676	333.59082	0	13.509674						248	9	3	NaN	NaN	NaN	0.10956	1	7124	7124		34.439	0	1	48603	+		24248	11450	13984	14386	19295	19295					0.024854810348642786
SHAPDILSI	9	Unmodified						0	0	0			REV__ENST00000202917.9_1_12:113357194-113357533:+|nuORF	REV__ENST00000202917.9_1_12:113357194-113357533:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	476.758549	951.502546	1.8519	0.00088292	-2.0825	-0.00099283	-0.23053	-0.00010991	476.7578710890034	23.393	0.19295	23.393	23.345	23.538	0	1326	55	0.8209676	0.033247292	0.8209676	333.59082		13.509674	-0.0051804	6.6251E-05	0.00075972	NaN	34.439	248	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48603	+		24249	11450	13984	14386							0.024854810348642786
SHEVVSFLSS	10	Unmodified	_SHEVVSFLSS_					0	0	0			REV__nc|ENSG00000149639|O94964-3|MTCL2	REV__nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2720209733501	2	546.272021	1090.52949	0.82206	0.00044907	2.4692	0.0013489	3.2913	0.0017979	546.2737559882486	30.873	0.072369	30.873	30.849	30.922	0	1242	94	0.87260187	0.05709541	0.87260187	353.9273	0	23.157898						141	4	2	NaN	NaN	NaN	0.73444	1	12423	12423		5.6942	0.78442	1	18272	+		24250	9998	13985	14387	19296	19296					-0.012154551446201367
SHEVVSFLSS	10	Unmodified						0	0	0			REV__nc|ENSG00000149639|O94964-3|MTCL2	REV__nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.272021	1090.52949	0.82206	0.00044907	2.4692	0.0013489	3.2913	0.0017979	546.2737559882486	30.873	0.072369	30.873	30.849	30.922	0	1242	94	0.87260187	0.05709541	0.87260187	353.9273		23.157898	-0.0086573	0.00031674	-0.0010814	NaN	5.6942	141	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18272	+		24251	9998	13985	14387							-0.012154551446201367
SHEVVSFLSS	10	Unmodified						0	0	0			REV__nc|ENSG00000149639|O94964-3|MTCL2	REV__nc|ENSG00000149639|O94964-3|MTCL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.272021	1090.52949	1.1339	0.00061939	1.8397	0.001005	2.9736	0.0016244	546.2736769078064	30.896	0.096561	30.891	30.842	30.939	-0.0057545	1236	94	0.876284	0.05708927	0.8747646	355.4208		23.155396	0.0086573	-0.00037099	0.0010814	NaN	5.6942	199	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20809	+		24252	9998	13985	14387							-0.012154551446201367
SHFDDLGVSVL	11	Unmodified	_SHFDDLGVSVL_					0	0	0			REV__ENST00000493997.1_1_2:55096258-55106778:+|nuORF	REV__ENST00000493997.1_1_2:55096258-55106778:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7984028993501	2	594.798403	1187.58225	1.4506	0.0008628	-1.2546	-0.00074624	0.19597	0.00011656	594.7998568744354	16.611	0.095934	16.598	16.55	16.645	-0.012993	1212	61	0.8910048	0.03676611	0.88948536	361.02283	0	14.897125						120	5	2	NaN	NaN	NaN	0.69801	1	15471	15471		7.5876	0	1	11647	+		24253	11291	13986	14388	19297	19297					-0.0040349708181111055
SHFGCQATCCR	11	Unmodified	_SHFGCQATCCR_					0	0	0		ENSG00000214782|ENST00000529108|MS4A18	ENSG00000214782|ENST00000529108|MS4A18	ENSG00000214782|ENST00000529108|MS4A18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7389848832	2	606.738985	1211.46342	0.97138	0.00058937	-0.33677	-0.00020433	0.63461	0.00038504	606.7374208357255	24.188	0.21713	24.175	24.006	24.224	-0.012749	1188	61	0.90571284	0.036746264	0.9041934	366.89923	0	14.885742						229	10	5	NaN	NaN	NaN	0.58731	1	16075	16075		14.854	0.42897	1	34934			24254	5991	13987	14389	19298	19298					-0.13385633854318257
SHGAELQRL	9	Unmodified	_SHGAELQRL_					0	0	0			REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	337.5174404887667	3	337.51744	1009.53049	1.8778	0.00063379	-2.2928	-0.00077386	-0.415	-0.00014007	337.51652012431623	11.98	0.26404	11.98	11.908	12.172	0	1443	52	0.7487872	0.03152466	0.7487872	456.0118	0	19.198547						287	12	3	NaN	NaN	NaN	0.20577	1	8962	8962		16.858	1.0364	1	50079	+		24255	8334	13988	14390	19299	19299					0.026108040149551925
SHGAELQRL	9	Unmodified	_SHGAELQRL_					0	0	0			REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	337.5174404887667	3	337.51744	1009.53049	1.576	0.00053192	-2.4292	-0.00081988	-0.85318	-0.00028796	337.5168105863494	12.006	0.26393	11.998	11.902	12.166	-0.0081863	1437	46	0.7524962	0.027815938	0.75097674	458.27057	0	16.93988						213	12	2	NaN	NaN	NaN	0.078597	1	8794	8794		27.296	4.1786	1	49861	+		24256	8334	13988	14390	19300	19300					0.026108040149551925
SHGAELQRL	9	Unmodified						0	0	0			REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	337.51744	1009.53049	1.8778	0.00063379	-2.2928	-0.00077386	-0.415	-0.00014007	337.51652012431623	11.98	0.26404	11.98	11.908	12.172	0	1443	52	0.7487872	0.03152466	0.7487872	456.0118		19.198547	-0.0088749	5.1011E-05	-0.0010948	NaN	27.296	287	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50079	+		24257	8334	13988	14390							0.026108040149551925
SHGAELQRL	9	Unmodified						0	0	0			REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	REV__DSTYK|p.R614W|1|0.26|ENSG00000133059|chr1:205161366-205161366|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	337.51744	1009.53049	1.576	0.00053192	-2.4292	-0.00081988	-0.85318	-0.00028796	337.5168105863494	12.006	0.26393	11.998	11.902	12.166	-0.0081863	1437	46	0.7524962	0.027815938	0.75097674	458.27057		16.93988	0.0088749	-8.7047E-05	0.0010948	NaN	27.296	213	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49861	+		24258	8334	13988	14390							0.026108040149551925
SHGGGGDC	8	Unmodified	_SHGGGGDC_					0	0	0		ENST00000306749.3_1_17:80054214-80056200:-|nuORF	ENST00000306749.3_1_17:80054214-80056200:-|nuORF	ENST00000306749.3_1_17:80054214-80056200:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.2307638294	1	689.230764	688.223487	1.7378	0.0011977	-11.091	-0.0076442	-9.3531	-0.0064464	689.2232128334128	26.384	0.072378	26.373	26.3	26.373	-0.011137	759	76	1.1664921	0.04526341	1.1649727	238.28871	0	9.246307						99	4	2	NaN	NaN	NaN	0.84945	1	2915	2915		0	0	1	7865.7			24259	6428	13989	14391	19301	19301					-0.13309544138689944
SHGVTFLMES	10	Unmodified	_SHGVTFLMES_					0	0	0		ENST00000296603.4_1_5:36141239-36142655:-|nuORF	ENST00000296603.4_1_5:36141239-36142655:-|nuORF	ENST00000296603.4_1_5:36141239-36142655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2605990073	2	554.260599	1106.50665	0.99325	0.00055052	-6.9535	-0.0038541	-5.9603	-0.0033036	554.2562192802479	27.157	0.16888	27.157	27.109	27.277	0	1185	46	0.90755045	0.027564168	0.90755045	368.0362	0	11.178009						183	8	4	NaN	NaN	NaN	0.67523	1	13118	13118		9.746	2.2056	1	18552			24260	6398	13990	14392	19302	19302					-0.04234797533740675
SHHYYIDC	8	Unmodified	_SHHYYIDC_					0	0	0		ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2109091605	2	519.210909	1036.40727	1.8193	0.00094459	6.8801	0.0035722	8.6994	0.0045168	519.2143937579455	15.486	0.38421	15.486	15.438	15.822	0	1311	52	0.83019954	0.031381547	0.83019954	336.9482	0	12.736633						321	17	4	NaN	NaN	NaN	0.82332	1	10048	10048		6.0903	0.62448	1	54005			24261	6560	13991	14393	19303	19303					-0.10948195427840801
SHHYYIDC	8	Unmodified						0	0	0		ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.210909	1036.40727	1.687	0.0008759	6.4361	0.0033417	8.1231	0.0042176	519.2141325931258	15.508	0.23981	15.496	15.4	15.64	-0.012202	1308	64	0.83204526	0.038773835	0.8305259	337.69733		15.736908	0.0049226	-0.00026849	0.00016317	NaN	6.0903	337	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60346			24262	6560	13991	14393							-0.10948195427840801
SHLLLLCS	8	Unmodified	_SHLLLLCS_					0	0	0		nc|ENSG00000213901|Q6PIS1-2|SLC23A3;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	nc|ENSG00000213901|Q6PIS1-2|SLC23A3	nc|ENSG00000213901|Q6PIS1-2|SLC23A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.24676335055005	2	443.246763	884.478974	1.9829	0.00087893	5.2344	0.0023201	7.2173	0.0031991	443.24916818827296	16.299	0.0959	16.286	16.262	16.358	-0.012993	1398	52	0.77658504	0.031466663	0.7750656	315.89667	0	12.799896						77	5	2	NaN	NaN	NaN	0.84727	1	5747	5747		1.2418	0	1	5557.7			24263	5972	13992	14394	19304	19304					0.0321134399669063
SHMLLYLKE	9	Unmodified	_SHMLLYLKE_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.53896518600004	3	378.538965	1132.59507	1.5488	0.00058627	-3.5237	-0.0013339	-1.975	-0.0007476	378.5375537467001	22.886	0.14469	22.872	22.824	22.969	-0.01354	1476	73	0.72837335	0.0445562	0.7268539	442.93225	0	27.095123						212	7	3	NaN	NaN	NaN	0.59509	1	13742	13742		3.261	1.0847	1	19080			24264	3123	13993	14395	19305	19305					0.03407242776734165
SHMLLYLKE	9	Unmodified						0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	378.538965	1132.59507	1.7823	0.00067465	-4.7863	-0.0018118	-3.0041	-0.0011372	378.53707206720554	22.79	0.12058	22.79	22.766	22.887	0	1470	73	0.7320868	0.044551373	0.7320868	445.19043		27.092194	-0.041082	-0.00073173	0.0026164	NaN	3.261	216	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23524			24265	3123	13993	14395							0.03407242776734165
SHQQSLLG	8	Unmodified	_SHQQSLLG_					0	0	0		ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.22741650445005	2	435.227417	868.44028	0.89481	0.00038945	0.472	0.00020543	1.3668	0.00059487	435.2276933688314	32.225	0.072357	32.225	32.201	32.273	0	1398	40	0.77658504	0.024070561	0.77658504	315.98584	0	9.794098						41	4	2	NaN	NaN	NaN	0.80692	1	5643	5643		8.2903	0	1	4974			24266	5357	13994	14396	19306	19306					0.0007975468653285134
SHRNRSRL	8	Unmodified	_SHRNRSRL_					0	0	0			REV__nc|ENSG00000173068|Q6ZN30-2|BNC2	REV__nc|ENSG00000173068|Q6ZN30-2|BNC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.52856242673334	3	342.528562	1024.56386	2.1163	0.00072488	0.037344	1.2791E-05	2.1536	0.00073767	342.52826578998116	15.58	0.071916	15.568	15.568	15.64	-0.012201	1440	40	0.7506418	0.024109721	0.7491224	457.0512	0	14.679962						74	4	2	NaN	NaN	NaN	0.79379	1	9380	9380		6.8632	0.613	1	11971	+		24267	10554	13995	14397	19307	19307					0.05255850577509591
SHRNRSRL	8	Unmodified						0	0	0			REV__nc|ENSG00000173068|Q6ZN30-2|BNC2	REV__nc|ENSG00000173068|Q6ZN30-2|BNC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	342.528562	1024.56386	2.1163	0.00072488	0.037344	1.2791E-05	2.1536	0.00073767	342.52826578998116	15.58	0.071916	15.568	15.568	15.64	-0.012201	1440	40	0.7506418	0.024109721	0.7491224	457.0512		14.679962	-0.00711	-0.0010023	0.00016758	NaN	6.8632	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11971	+		24268	10554	13995	14397							0.05255850577509591
SHSDDDDSDS	10	Unmodified	_SHSDDDDSDS_					0	0	0			REV__nc|ENSG00000196504|O75400-2|PRPF40A	REV__nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.1734291407499	2	540.173429	1078.33231	1.9104	0.0010319	1.8281	0.0009875	3.7385	0.0020194	540.6755180797516	14.117	0.096084	14.117	14.069	14.165	0	1290	34	0.84311575	0.020290375	0.84311575	342.016	0	8.2309265						81	5	2	NaN	NaN	NaN	0.77421	1	11888	11888		1.9246	0	1	5865.3	+		24269	11106	13996	14398	19308	19308					-0.20372751216041252
SHSRESDRR	9	Unmodified	_SHSRESDRR_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.1867534635667	3	377.186753	1128.53843	1.6795	0.00063348	-2.3842	-0.00089929	-0.7047	-0.0002658	377.18570661244377	24.96	0.072418	24.96	24.912	24.985	0	1518	25	0.7023569	0.014877856	0.7023569	427.12973	0	9.047791						41	4	2	NaN	NaN	NaN	0.67082	1	14022	14022		0.81135	0	1	3163.5	+		24270	8607	13997	14399	19309	19309					-0.020696687355894028
SHSSTLTC	8	Unmodified	_SHSSTLTC_					0	0	0		ENST00000375326.8_1_9:97365557-97365653:-|nuORF	ENST00000375326.8_1_9:97365557-97365653:-|nuORF	ENST00000375326.8_1_9:97365557-97365653:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.3614436514001	1	835.361444	834.354167	1.896	0.0015838	0.69474	0.00058036	2.5907	0.0021642	835.3608496903082	28.436	0.096558	28.436	28.412	28.508	0	480	43	1.3339561	0.02508998	1.3339561	271.56537	0	5.107788						72	5	2	NaN	NaN	NaN	0.80692	1	5188	5188		8.2903	0	1	4351.1			24271	6694	13998	14400	19310	19310					-0.06963573210487084
SHTRQHSFL	9	Unmodified	_SHTRQHSFL_					0	0	0			REV__ZNF175|p.R380S|1|0.1|ENSG00000105497|chr19:51587471-51587471|A/T|missense_variant	REV__ZNF175|p.R380S|1|0.1|ENSG00000105497|chr19:51587471-51587471|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.78342153715	2	556.783422	1111.55229	1.548	0.0008619	-4.5125	-0.0025125	-2.9645	-0.0016506	556.7816778702922	21.537	0.19276	21.523	21.426	21.619	-0.014004	1506	40	0.70979416	0.024167359	0.7082747	287.82462	0	9.799988						132	9	3	NaN	NaN	NaN	0.67989	1	12962	12962		0.92586	0	1	11692	+		24272	13652	13999	14401	19311	19311					0.0009760876350810577
SHTTSAVSL	9	Unmodified	_SHTTSAVSL_					0	0	0		ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.4577868776001	1	902.457787	901.45051	1.3652	0.0012321	3.9082	0.003527	5.2735	0.0047591	902.4612496941361	34.131	0.19299	34.131	34.083	34.276	0	372	133	1.3983358	0.078535795	1.3983358	284.32816	0	15.968933						317	9	3	NaN	NaN	NaN	0.14301	1	6103	6103		29.598	0	1	39601			24273	7506	14000	14402	19312	19312					-0.0041568237888895965
SHTTSAVSL	9	Unmodified	_SHTTSAVSL_					0	0	0		ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4577868776001	1	902.457787	901.45051	1.4037	0.0012668	2.261	0.0020405	3.6647	0.0033073	902.459798196934	34.13	0.14484	34.129	34.08	34.225	-0.0012474	369	136	1.4001206	0.08032501	1.3986012	284.69107	0	16.332733						328	7	3	NaN	NaN	NaN	0.31737	1	5981	5981		17.799	0	1	37711			24274	7506	14000	14402	19313	19313					-0.0041568237888895965
SHTVAGGG	8	Unmodified	_SHTVAGGG_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.16682762035003	2	343.166828	684.319102	0.79178	0.00027171	-8.2571	-0.0028336	-7.4653	-0.0025619	343.16403904186257	38.948	0.12015	38.948	38.9	39.02	0	1530	46	0.6949163	0.027906656	0.6949163	283.93564	0	11.402344						98	6	2	NaN	NaN	NaN	0.8439	1	2927	2927		3.1533	0.36816	1	9202.4			24275	4241	14001	14403	19314	19314					-0.03568447956138243
SIAANNCT	8	Unmodified	_SIAANNCT_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.3508789650999	1	793.350879	792.343602	-0.1649	-0.00013082	-1.6249	-0.0012891	-1.7898	-0.0014199	793.3498040275558	55.41	0.07198	55.409	55.386	55.458	-0.00061798	516	52	1.3124412	0.030497313	1.3109218	267.41483	0	6.213928						92	4	2	NaN	NaN	NaN	0.84606	1	4567	4567		1.9246	0	1	13298			24276	610	14002	14404	19315	19315					-0.060875558649399863
SIAANNCT	8	Unmodified						0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	793.350879	792.343602	1.9144	0.0015188	-2.5722	-0.0020407	-0.65777	-0.00052184	793.3490149413767	55.412	0.072033	55.412	55.388	55.46	0	519	52	1.310647	0.030507088	1.310647	267.0493		6.2159424	0.0014447	-0.00041445	-0.00013736	NaN	1.9246	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13664			24277	610	14002	14404							-0.060875558649399863
SIAHGSNI	8	Unmodified	_SIAHGSNI_					0	0	0		ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4104427545	1	798.410443	797.403166	1.3119	0.0010474	-8.6288	-0.0068893	-7.3169	-0.0058419	798.4032451154638	27.349	0.1448	27.339	27.291	27.436	-0.010126	480	64	1.3339561	0.037636995	1.3324367	271.76923	0	7.6678467						236	7	3	NaN	NaN	NaN	0.76406	1	4633	4633		14.042	0	1	31669			24278	5598	14003	14405	19316	19316					-0.0036391685924854755
SIAYSLLSA	9	Unmodified	_SIAYSLLSA_					0	0	0		ENSG00000179094|ENST00000317276|PER1;ENST00000579065.1_1_17:8052750-8054072:-|nuORF;nc|ENSG00000179094|O15534-4|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.75547545215	2	462.755475	923.496398	0.54434	0.0002519	-7.3442	-0.0033986	-6.7999	-0.0031467	462.75190188047543	30.993	0.12069	30.988	30.94	31.06	-0.0050716	1359	40	0.8006399	0.024039328	0.7991205	325.47137	0	9.772308						134	6	3	NaN	NaN	NaN	0.36492	1	6348	6348		15.175	0	1	20198			24279	5140	14004	14406	19317	19317					0.03158962803331633
SICSECKP	8	Unmodified	_SICSECKP_					0	0	0			REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.3746508746	1	866.374651	865.367374	1.6443	0.0014246	-0.27743	-0.00024036	1.3669	0.0011843	866.3741086911776	28.725	0.1931	28.725	28.677	28.87	0	405	52	1.3786905	0.030377269	1.3786905	280.5093	0	6.1805725						159	9	2	NaN	NaN	NaN	0.78264	1	5605	5605		11.548	2.4253	1	15278	+		24280	12813	14005	14407	19318	19318					-0.07069458422768093
SICSECKP	8	Unmodified						0	0	0			REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	866.374651	865.367374	1.6443	0.0014246	-0.27743	-0.00024036	1.3669	0.0011843	866.3741086911776	28.725	0.1931	28.725	28.677	28.87	0	405	52	1.3786905	0.030377269	1.3786905	280.5093		6.1805725	-0.0075204	7.4438E-06	-0.00013373	NaN	11.548	159	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15278	+		24281	12813	14005	14407							-0.07069458422768093
SICSECKP	8	Unmodified						0	0	0			REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	866.374651	865.367374	1.0327	0.00089472	-0.31922	-0.00027656	0.7135	0.00061816	866.3731724593767	28.749	0.16891	28.74	28.668	28.837	-0.0083504	402	55	1.3804773	0.032165885	1.3789579	280.87286		6.544464	0.0075204	-2.8763E-05	0.00013373	NaN	11.548	180	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13801	+		24282	12813	14005	14407							-0.07069458422768093
SIGLLIQWEEE	11	Unmodified	_SIGLLIQWEEE_					0	0	0			REV__ENST00000550115.5_1_12:56325996-56326442:+|nuORF	REV__ENST00000550115.5_1_12:56325996-56326442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.8402677140501	2	658.840268	1315.66598	0.83435	0.0005497	2.2018	0.0014506	3.0361	0.0020003	659.3443211684022	41.665	0.19246	41.673	41.601	41.793	0.0082588	1239	70	0.87444305	0.042319894	0.8729236	353.9158	0	17.128235						383	9	6	NaN	NaN	NaN	0.76654	1	18204	18204		2.5994	0	1	27228	+		24283	12734	14006	14408	19319	19319					0.020776142952627197
SIHGGVLTFI	10	Unmodified	_SIHGGVLTFI_					0	0	0			REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.5884071200999	1	1043.58841	1042.58113	1.6044	0.0016744	2.9476	0.003076	4.552	0.0047504	1043.591068767025	36.95	0.096085	36.952	36.904	37	0.0022507	210	43	1.4944444	0.024842978	1.4929249	303.25098	0	5.041107						68	5	2	NaN	NaN	NaN	0.73444	1	10130	10130		5.6942	0.50528	1	4914.3	+		24284	8947	14007	14409	19320	19320					0.061543333399413314
SIHPNHVV	8	Unmodified	_SIHPNHVV_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.74577643310005	2	451.745776	901.477	0.93871	0.00042406	-1.2791	-0.00057784	-0.34042	-0.00015378	451.7450931657386	21.2	0.16854	21.186	21.114	21.282	-0.014004	1539	109	0.68933374	0.06692147	0.6878143	280.32413	0	27.214264						246	8	2	NaN	NaN	NaN	0.81251	1	5984	5984		7.5404	1.2902	1	25677			24285	4047	14008	14410	19321	19321					0.022320513030990696
SIIELDLNLF	10	Unmodified	_SIIELDLNLF_					0	0	0			REV__tr|U7SUY0|U7SUY0_FUSNUCobalt-precorrin5AhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01047PE=4SV=1	REV__tr|U7SUY0|U7SUY0_FUSNUCobalt-precorrin5AhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01047PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8291717115	2	588.829172	1175.64379	1.949	0.0011476	-5.057	-0.0029777	-3.108	-0.0018301	589.3263462118083	28.074	0.1448	28.074	28.026	28.17	0	1170	64	0.91673553	0.03856486	0.91673553	371.4919	0	15.627777						291	7	4	NaN	NaN	NaN	0.507	1	15675	15675		19.164	1.3646	1	73432	+		24286	13525	14009	14411	19322	19322					0.06299434617449151
SIIPQEPVL	9	Unmodified	_SIIPQEPVL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.5771737318001	1	995.577174	994.569897	2.0688	0.0020597	-0.52359	-0.00052128	1.5453	0.0015384	995.5762664452751	28.339	0.09647	28.339	28.315	28.412	0	195	88	1.5033154	0.051463246	1.5033154	305.24335	0	10.449432						178	5	2	NaN	NaN	NaN	0.045904	1	8376	8376		48.65	19.755	1	22906			24287	1973	14010	14412	19323	19323					0.07239511245813901
SIIPQEPVL	9	Unmodified	_SIIPQEPVL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.5771737318001	1	995.577174	994.569897	1.3356	0.0013297	-1.6766	-0.0016691	-0.34092	-0.00033941	995.5754942953704	28.363	0.096508	28.354	28.305	28.402	-0.0089779	195	91	1.5033154	0.053240657	1.501796	305.24335	0	10.810333						162	5	2	NaN	NaN	NaN	0.12866	1	8212	8212		31.675	7.1134	1	23270			24288	1973	14010	14412	19324	19324					0.07239511245813901
SIISSGGK	8	Unmodified	_SIISSGGK_					0	0	0			REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	REV__ENST00000409195.5_2_2:168108454-168115870:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.4199448083002	1	748.419945	747.412668	1.7133	0.0012822	5.7749	0.0043221	7.4882	0.0056043	748.4246052511751	32.732	0.19301	32.732	32.683	32.876	0	552	205	1.2908988	0.12238753	1.2908988	263.2946	0	24.962433						859	9	4	NaN	NaN	NaN	0.78264	1	4006	4006		11.548	0	1	507630	+		24289	12058	14011	14413	19325	19325					0.028858514262992685
SIKRIGSN	8	Unmodified	_SIKRIGSN_					0	0	0			REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.5104911501002	1	874.510491	873.503215	2.0392	0.0017833	4.6244	0.0040441	6.6636	0.0058274	874.5143596563616	25.708	0.14475	25.708	25.684	25.829	0	1245	85	0.87076044	0.051567256	0.87076044	177.1397	0	10.490387						302	7	3	NaN	NaN	NaN	0.84897	1	5727	5727		0.27539	0	1	46327	+		24290	12692	14012	14414	19326	19326					0.06140320474571581
SIKRIGSN	8	Unmodified						0	0	0			REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	874.510491	873.503215	2.0392	0.0017833	4.6244	0.0040441	6.6636	0.0058274	874.5143596563616	25.708	0.14475	25.708	25.684	25.829	0	1245	85	0.87076044	0.051567256	0.87076044	177.1397		10.490387	-0.030252	-0.00054823	0.00075972	NaN	0.27539	302	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46327	+		24291	12692	14012	14414							0.06140320474571581
SIKRIGSN	8	Unmodified						0	0	0			REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	REV__ENST00000540226.1_1_12:215852-215996:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	874.510491	873.503215	1.7692	0.0015472	6.067	0.0053057	7.8362	0.0068528	874.5157485567684	25.78	0.1931	25.769	25.696	25.89	-0.0116	1245	76	0.87076044	0.046034753	0.869241	177.1397		9.364883	0.030252	0.00071335	-0.00075972	NaN	0.27539	338	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47608	+		24292	12692	14012	14414							0.06140320474571581
SILDDLGSSIV	11	Unmodified	_SILDDLGSSIV_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.5361663137333	3	373.536166	1117.58667	2.0284	0.00075768	2.6101	0.00097497	4.6385	0.0017326	373.53710413699173	17.669	0.21573	17.669	17.597	17.813	0	1491	52	0.7190863	0.03158295	0.7190863	437.35513	0	19.209045						302	10	4	NaN	NaN	NaN	0.48069	1	13584	13584		10.204	0	1	58534	+		24293	9168	14013	14415	19327	19327					0.03257967341096446
SILVMGGG	8	Unmodified	_SILVMGGG_					0	0	0		ENST00000302475.8_1_5:112630423-112630462:-|nuORF	ENST00000302475.8_1_5:112630423-112630462:-|nuORF	ENST00000302475.8_1_5:112630423-112630462:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.1992818417001	2	367.199282	732.384011	1.562	0.00057356	3.585	0.0013164	5.147	0.00189	367.2008568401697	29.087	0.12063	29.087	29.039	29.16	0	1458	34	0.7395112	0.020413876	0.7395112	301.76862	0	8.33017						56	6	2	NaN	NaN	NaN	0.84876	1	3793	3793		0.39566	0	1	3308.8			24294	6415	14014	14416	19328	19328					0.007114105255141112
SIMDAGLVLV	10	Unmodified	_SIMDAGLVLV_					0	0	0		nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.28608547629995	2	509.286085	1016.55762	0.82521	0.00042027	-5.1829	-0.0026396	-4.3577	-0.0022193	509.28358028508546	30.221	0.12063	30.214	30.19	30.311	-0.0064106	1266	52	0.85786515	0.0313375	0.8563457	348.26587	0	12.722015						136	6	2	NaN	NaN	NaN	0.29898	1	9066	9066		27.789	5.9538	1	14990			24295	7907	14015	14417	19329	19329					0.05000151511103468
SIMDAGLVLV	10	Unmodified						0	0	0		nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.286085	1016.55762	1.8279	0.00093095	-6.2465	-0.0031813	-4.4185	-0.0022503	509.282593409106	30.246	0.12063	30.246	30.198	30.318	0	1272	58	0.854179	0.035031855	0.854179	346.7694		14.221802	0.015747	-0.00072474	-0.0010834	NaN	27.789	113	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10770			24296	7907	14015	14417							0.05000151511103468
SIMLALISL	9	Unmodified	_SIMLALISL_					0	0	0			REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5798162687003	1	960.579816	959.57254	1.5697	0.0015078	-3.5677	-0.0034271	-1.998	-0.0019193	960.5768721253035	38.249	0.12021	38.252	38.204	38.325	0.0034256	222	73	1.4873441	0.042601585	1.4858247	302.15094	0	8.654419						230	6	3	NaN	NaN	NaN	0.043119	1	7188	7188		49.833	2.7927	1	22235	+		24297	11641	14016	14418	19330	19330					0.0911364337912346
SIMLALISL	9	Unmodified						0	0	0			REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	960.579816	959.57254	0.53098	0.00051005	-5.5322	-0.0053141	-5.0012	-0.0048041	960.5746185590933	38.251	0.12012	38.251	38.203	38.324	0	222	67	1.4873441	0.039051414	1.4873441	302.15094		7.9332275	-0.00050969	-0.0010497	0.00075972	NaN	49.833	222	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20824	+		24298	11641	14016	14418							0.0911364337912346
SIMLALISL	9	Unmodified						0	0	0			REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	REV__ENST00000298767.9_1_10:88259585-88259723:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	960.579816	959.57254	1.5697	0.0015078	-3.5677	-0.0034271	-1.998	-0.0019193	960.5768721253035	38.249	0.12021	38.252	38.204	38.325	0.0034256	222	73	1.4873441	0.042601585	1.4858247	302.15094		8.654419	0.00050969	0.00083731	-0.00075972	NaN	49.833	230	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22235	+		24299	11641	14016	14418							0.0911364337912346
SIMQKVSTDH	10	Unmodified	_SIMQKVSTDH_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ABCA5|p.D181Rfs*21|1|0.18|ENSG00000154265|chr17:69308298-69308299|-/A|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2846054198501	2	573.284605	1144.55466	1.0528	0.00060357	1.2998	0.00074517	2.3527	0.0013487	573.2851817942507	20.501	0.24085	20.487	20.463	20.704	-0.014143	1206	73	0.894683	0.044152796	0.89316356	362.66965	0	17.897797						332	11	4	NaN	NaN	NaN	0.66626	1	14131	14131		10.36	0	1	61507			24300	3837	14017	14419	19331	19331					-0.011837236136898355
SINGQPGG	8	Unmodified	_SINGQPGG_					0	0	0		tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3525935246001	1	729.352594	728.345317	1.0706	0.00078087	-10.296	-0.0075096	-9.2257	-0.0067288	729.3450046518138	31.283	0.26543	31.277	31.229	31.495	-0.0050716	606	109	1.2585332	0.06483483	1.2570138	256.81436	0	13.230103						498	12	4	NaN	NaN	NaN	0.80692	1	3656	3656		8.2903	0.74991	1	92635			24301	13976	14018	14420	19332	19332					-0.02972178784659718
SIPLECPL	8	Unmodified	_SIPLECPL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1;AKAP1|p.V630Cfs*77|1|0.44|ENSG00000121057|chr17:57111835-57111836|-/T|frameshift_variant	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.4593667820001	1	871.459367	870.45209	1.9937	0.0017375	0.41561	0.00036219	2.4093	0.0020996	871.4597557719578	21.416	0.072136	21.402	21.354	21.426	-0.014004	387	40	1.389409	0.023217201	1.3878895	282.66428	0	4.7233887						55	4	2	NaN	NaN	NaN	0.8439	1	5529	5529		3.1533	0	1	2948.4			24302	2285	14019	14421	19333	19333					0.011682353855007932
SIQPALTSPLF	11	Unmodified	_SIQPALTSPLF_					0	0	0			REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.88865141353324	3	391.888651	1172.64412	1.8331	0.00071838	-0.91533	-0.00035871	0.91781	0.00035968	391.88798316062025	17.837	0.16785	17.837	17.717	17.885	0	1482	46	0.72465914	0.027858198	0.72465914	440.49283	0	16.93393						205	8	3	NaN	NaN	NaN	0.6011	1	15582	15582		7.4554	1.099	1	47741	+		24303	11565	14020	14422	19334	19334					0.0647085433729444
SIQPALTSPLF	11	Unmodified	_SIQPALTSPLF_					0	0	0			REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.88865141353324	3	391.888651	1172.64412	1.7894	0.00070123	-0.51728	-0.00020272	1.2721	0.00049852	392.2228575507482	18.89	0.072124	18.876	18.828	18.9	-0.014061	1482	31	0.72465914	0.018573165	0.7231397	440.49283	0	11.289917						74	4	3	NaN	NaN	NaN	0.57257	1	15026	15026		8.4563	0	1	7462.6	+		24304	11565	14020	14422	19335	19335					0.0647085433729444
SIQPALTSPLF	11	Unmodified						0	0	0			REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	391.888651	1172.64412	1.8331	0.00071838	-0.91533	-0.00035871	0.91781	0.00035968	391.88798316062025	17.837	0.16785	17.837	17.717	17.885	0	1482	46	0.72465914	0.027858198	0.72465914	440.49283		16.93393	0	0	0	NaN	7.4554	205	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47741	+		24305	11565	14020	14422							0.0647085433729444
SIRKQQTNNQT	11	Unmodified	_SIRKQQTNNQT_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3471142162	2	659.347114	1316.67968	1.2234	0.00080666	-7.0594	-0.0046546	-5.836	-0.003848	659.3437766067651	39.837	0.19285	39.843	39.771	39.963	0.0060463	1194	70	0.902037	0.042287946	0.9005176	365.08112	0	17.115173						381	9	5	NaN	NaN	NaN	0.75376	1	18216	18216		3.9281	0.35833	1	35663			24306	4159	14021	14423	19336	19336					0.034002848470208846
SIRVHEDMY	9	Unmodified	_SIRVHEDMY_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2714980446001	2	575.271498	1148.52844	0.9065	0.00052148	6.9578	0.0040026	7.8643	0.0045241	575.2756098647385	28.025	0.096529	28.016	27.992	28.088	-0.0089779	1041	118	0.9955231	0.071250856	0.99400365	403.52963	0	28.881134						196	5	2	NaN	NaN	NaN	0.68801	1	14251	14251		0.23014	0	1	21442	+		24307	9505	14022	14424	19337	19337					-0.039879927851643515
SITSPSIAEL	10	Unmodified	_SITSPSIAEL_					0	0	0		nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5462675339	1	1017.54627	1016.53899	2.6846	0.0027317	-0.0087923	-8.9466E-06	2.6758	0.0027227	1017.5454271905983	26.312	0.072435	26.312	26.288	26.36	0	201	49	1.4997677	0.028385997	1.4997677	304.43295	0	5.7619934						119	4	3	NaN	NaN	NaN	0.15427	1	9239	9239		39.459	2.1564	1	12090			24308	4680	14023	14425	19338	19338					0.031383131409029374
SIVDDEATL	9	Unmodified	_SIVDDEATL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4676828619	1	962.467683	961.460406	2.2552	0.0021705	-1.4771	-0.0014217	0.77803	0.00074883	962.4652226622175	23.199	0.048288	23.186	23.138	23.186	-0.013294	315	43	1.4322147	0.024940848	1.4306953	290.94342	0	5.0665283						63	3	2	NaN	NaN	NaN	0.10956	1	7216	7216		34.439	15.32	1	4126.5			24309	2246	14024	14426	19339	19339					-0.021865391641881615
SIVSTSVV	8	Unmodified	_SIVSTSVV_					0	0	0			REV__nc|ENSG00000159140|P18583-8|SON	REV__nc|ENSG00000159140|P18583-8|SON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.4509105857001	1	791.450911	790.443634	1.6825	0.0013317	-8.4611	-0.0066965	-6.7785	-0.0053649	791.4437206013612	32.996	0.096394	32.993	32.969	33.066	-0.0024757	489	37	1.3285799	0.021505713	1.3270605	270.71426	0	4.3820496						67	5	2	NaN	NaN	NaN	0.77489	1	4548	4548		12.588	0	1	4567.6	+		24310	10180	14025	14427	19340	19340					0.040030047405252844
SIVSTSVV	8	Unmodified						0	0	0			REV__nc|ENSG00000159140|P18583-8|SON	REV__nc|ENSG00000159140|P18583-8|SON	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	791.450911	790.443634	1.6825	0.0013317	-8.4611	-0.0066965	-6.7785	-0.0053649	791.4437206013612	32.996	0.096394	32.993	32.969	33.066	-0.0024757	489	37	1.3285799	0.021505713	1.3270605	270.71426		4.3820496	-0.0018039	-0.0011138	0.0001365	NaN	12.588	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4567.6	+		24311	10180	14025	14427							0.040030047405252844
SIWISSQIY	9	Unmodified	_SIWISSQIY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7873068968001	2	548.787307	1095.56006	1.4779	0.00081106	0.60714	0.00033319	2.0851	0.0011443	548.7863001568337	22.934	0.072382	22.921	22.896	22.969	-0.01354	1233	103	0.87812483	0.062624216	0.8766054	356.14703	0	25.398926						178	4	4	NaN	NaN	NaN	0.58159	1	12329	12329		6.2502	0.15988	1	16201			24312	4299	14026	14428	19341	19341					0.01610323240447542
SKAHPGPA	8	Unmodified	_SKAHPGPA_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;SRCIN1|p.E1146Rfs*2|1|0.12|ENSG00000277363|chr17:38533414-38533414|T/-|frameshift_variant;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.70611995635	2	382.70612	763.397687	1.4808	0.00056673	-5.1913	-0.0019867	-3.7105	-0.00142	382.70396497998206	27.712	0.26543	27.712	27.664	27.929	0	1392	43	0.780288	0.02592069	0.780288	318.1711	0	10.569458						237	12	3	NaN	NaN	NaN	0.84455	1	4263	4263		2.7852	0.32367	1	35917			24313	6196	14027	14429	19342	19342					0.006524043489434916
SKAWAGGS	8	Unmodified	_SKAWAGGS_					0	0	0			REV__TRPC5|p.R791W|1|0.1|ENSG00000072315|chrX:111776864-111776864|G/A|missense_variant	REV__TRPC5|p.R791W|1|0.1|ENSG00000072315|chrX:111776864-111776864|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.3733289667001	1	763.373329	762.366053	1.4331	0.001094	6.0998	0.0046565	7.5329	0.0057504	763.3775120430059	29.038	0.12066	29.031	28.982	29.103	-0.0077229	624	61	1.247731	0.036019325	1.2462115	254.40004	0	7.343979						117	6	2	NaN	NaN	NaN	0.77489	1	4169	4169		12.588	0	1	9788.6	+		24314	13641	14028	14430	19343	19343					-0.02463588404998518
SKAWAGGS	8	Unmodified						0	0	0			REV__TRPC5|p.R791W|1|0.1|ENSG00000072315|chrX:111776864-111776864|G/A|missense_variant	REV__TRPC5|p.R791W|1|0.1|ENSG00000072315|chrX:111776864-111776864|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	763.373329	762.366053	1.4331	0.001094	6.0998	0.0046565	7.5329	0.0057504	763.3775120430059	29.038	0.12066	29.031	28.982	29.103	-0.0077229	624	61	1.247731	0.036019325	1.2462115	254.40004		7.343979	-0.0042677	0.00074944	0.0010414	NaN	12.588	117	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9788.6	+		24315	13641	14028	14430							-0.02463588404998518
SKDKFRKK	8	Unmodified	_SKDKFRKK_					0	0	0			REV__ENSG00000171368|ENST00000360578|TPPP	REV__ENSG00000171368|ENST00000360578|TPPP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.81673303825	2	518.816733	1035.61891	1.4944	0.00077531	4.8031	0.002492	6.2975	0.0032673	518.81944016604	20.67	0.1687	20.67	20.622	20.79	0	1191	49	0.90387505	0.029412925	0.90387505	366.85413	0	11.937775						245	8	4	NaN	NaN	NaN	0.8439	1	10041	10041		3.1533	1.7138	1	43913	+		24316	10622	14029	14431	19344	19344					0.10252844325418664
SKDKFRKK	8	Unmodified						0	0	0			REV__ENSG00000171368|ENST00000360578|TPPP	REV__ENSG00000171368|ENST00000360578|TPPP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.816733	1035.61891	1.4944	0.00077531	4.8031	0.002492	6.2975	0.0032673	518.81944016604	20.67	0.1687	20.67	20.622	20.79	0	1191	49	0.90387505	0.029412925	0.90387505	366.85413		11.937775	-0.18578	-0.00044492	0.00075972	NaN	3.1533	245	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43913	+		24317	10622	14029	14431							0.10252844325418664
SKEDEIDL	8	Unmodified	_SKEDEIDL_					0	0	0		tr|U7T5M9|U7T5M9_FUSNUMyb-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00112PE=4SV=1	tr|U7T5M9|U7T5M9_FUSNUMyb-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00112PE=4SV=1	tr|U7T5M9|U7T5M9_FUSNUMyb-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00112PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4520327977001	1	948.452033	947.444756	1.4812	0.0014049	8.3	0.0078722	9.7812	0.009277	948.4598718014591	27.519	0.072422	27.519	27.446	27.519	0	300	58	1.4411188	0.033832073	1.4411188	292.81335	0	6.874176						99	4	2	NaN	NaN	NaN	0.76406	1	7010	7010		14.042	1.4537	1	9914.2			24318	13991	14030	14432	19345	19345					-0.03106825681220471
SKELVFEV	8	Unmodified	_SKELVFEV_					0	0	0			REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.76330048425	2	475.7633	949.512048	1.3334	0.0006344	-3.3783	-0.0016073	-2.0449	-0.00097289	475.76210835055747	23.634	0.12049	23.621	23.596	23.717	-0.013048	1344	34	0.8098828	0.020327687	0.8083634	329.09644	0	8.260162						119	6	3	NaN	NaN	NaN	0.73961	1	6950	6950		16.584	1.4088	1	13893	+		24319	10527	14031	14433	19346	19346					0.03527249320381998
SKELVFEV	8	Unmodified						0	0	0			REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	475.7633	949.512048	1.5766	0.00075011	-2.6751	-0.0012727	-1.0985	-0.0005226	475.76158009359796	23.61	0.096392	23.61	23.586	23.682	0	1344	37	0.8098828	0.022176862	0.8098828	329.09644		9.011597	-0.0054111	0.00039841	0.00075972	NaN	16.584	102	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12885	+		24320	10527	14031	14433							0.03527249320381998
SKELVFEV	8	Unmodified						0	0	0			REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-2|PLA2G4F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	475.7633	949.512048	1.3334	0.0006344	-3.3783	-0.0016073	-2.0449	-0.00097289	475.76210835055747	23.634	0.12049	23.621	23.596	23.717	-0.013048	1344	34	0.8098828	0.020327687	0.8083634	329.09644		8.260162	0.0054111	-0.00027074	-0.00075972	NaN	16.584	119	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13893	+		24321	10527	14031	14433							0.03527249320381998
SKEPAYVRC	9	Unmodified	_SKEPAYVRC_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.76330887175	2	526.763309	1051.51206	1.3866	0.0007304	7.9085	0.0041659	9.2951	0.0048963	526.7671405057789	21.296	0.19252	21.296	21.248	21.44	0	1245	82	0.87076044	0.049744427	0.87076044	353.34387	0	20.185669						279	9	3	NaN	NaN	NaN	0.46215	1	10685	10685		11.17	2.9255	1	33346			24322	5737	14032	14434	19347	19347					-0.011630739512838772
SKERSVEIP	9	Unmodified	_SKERSVEIP_					0	0	0			REV__nc|ENSG00000120798|P13056-2|NR2C1	REV__nc|ENSG00000120798|P13056-2|NR2C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.5683999595	1	1044.5684	1043.56112	1.1869	0.0012398	-6.8598	-0.0071655	-5.6729	-0.0059257	1044.560028413641	30.873	0.072369	30.873	30.849	30.922	0	192	58	1.5050892	0.033685207	1.5050892	305.4073	0	6.835266						99	4	2	NaN	NaN	NaN	0.13602	1	10362	10362		30.61	3.8786	1	8954.3	+		24323	9322	14033	14435	19348	19348					0.04108537609340601
SKERSVEIP	9	Unmodified						0	0	0			REV__nc|ENSG00000120798|P13056-2|NR2C1	REV__nc|ENSG00000120798|P13056-2|NR2C1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1044.5684	1043.56112	1.1869	0.0012398	-6.8598	-0.0071655	-5.6729	-0.0059257	1044.560028413641	30.873	0.072369	30.873	30.849	30.922	0	192	58	1.5050892	0.033685207	1.5050892	305.4073		6.835266	0.015499	0.0012671	-0.0010137	NaN	30.61	99	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8954.3	+		24324	9322	14033	14435							0.04108537609340601
SKEVTNALM	9	Unmodified	_SKEVTNALM_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.7576921776	2	496.757692	991.500831	1.1975	0.00059485	-3.3484	-0.0016634	-2.151	-0.0010685	496.75543923322954	22.741	0.12047	22.728	22.704	22.824	-0.01354	1302	46	0.8357362	0.027683675	0.8342168	339.39673	0	11.242462						111	6	3	NaN	NaN	NaN	0.56671	1	8097	8097		6.8632	0.069206	1	8265.4	+		24325	11178	14034	14436	19349	19349					0.004741039545933745
SKEVTNALM	9	Unmodified						0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.757692	991.500831	1.8675	0.00092768	-2.9319	-0.0014564	-1.0644	-0.00052876	496.75611347442094	22.718	0.096485	22.718	22.694	22.79	0	1299	40	0.8375814	0.023989916	0.8375814	340.14606		9.742401	-0.0049913	0.00020895	0.0016823	NaN	6.8632	75	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6505.7	+		24326	11178	14034	14436							0.004741039545933745
SKEVTNALM	9	Unmodified						0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.757692	991.500831	1.1975	0.00059485	-3.3484	-0.0016634	-2.151	-0.0010685	496.75543923322954	22.741	0.12047	22.728	22.704	22.824	-0.01354	1302	46	0.8357362	0.027683675	0.8342168	339.39673		11.242462	0.0049913	-0.00020492	-0.0016823	NaN	6.8632	111	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8265.4	+		24327	11178	14034	14436							0.004741039545933745
SKFDTQYLIFL	11	Unmodified	_SKFDTQYLIFL_					0	0	0			REV__ENST00000422945.6_1_14:102393785-102393839:+|nuORF	REV__ENST00000422945.6_1_14:102393785-102393839:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8688281882501	2	687.868828	1373.7231	1.6055	0.0011043	-1.9842	-0.0013649	-0.37873	-0.00026052	687.867815148997	32.563	0.12067	32.563	32.539	32.659	0	1056	49	0.9863805	0.02926737	0.9863805	399.0452	0	11.8402405						137	6	3	NaN	NaN	NaN	0.51407	1	19840	19840		17.97	0	1	11805	+		24328	12116	14035	14437	19350	19350					0.05119081571615425
SKGATGGG	8	Unmodified	_SKGATGGG_					0	0	0			REV__ENSG00000139266|ENST00000266643|MARCHF9	REV__ENSG00000139266|ENST00000266643|MARCHF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.66137810170005	2	317.661378	633.308203	0.24852	7.8945E-05	7.4008	0.0023509	7.6493	0.0024299	317.66399897226563	47.586	0.1198	47.594	47.594	47.713	0.0074158	1527	37	0.69677675	0.022319257	0.6952573	285.14355	0	9.133759						82	6	2	NaN	NaN	NaN	0.84887	1	1481	1481		0.32989	0	1	5762.3	+		24329	9762	14036	14438	19351	19351					-0.023118503304090154
SKGCEGCI	8	Unmodified	_SKGCEGCI_					0	0	0			REV__ENSG00000180035|ENST00000613509|ZNF48	REV__ENSG00000180035|ENST00000613509|ZNF48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	796.3327860599001	1	796.332786	795.32551	2.0305	0.001617	-1.0068	-0.00080177	1.0237	0.00081519	796.3320668941851	51.805	0.33539	51.805	51.661	51.996	0	441	76	1.3572328	0.044724822	1.3572328	276.52362	0	9.112274						436	15	3	NaN	NaN	NaN	0.83582	1	4686	4686		4.4131	0	1	43402	+		24330	10819	14037	14439	19352	19352					-0.08034014111285614
SKGFGKAG	8	Unmodified	_SKGFGKAG_					0	0	0		ENST00000396137.4_1_5:78621635-78621827:+|nuORF	ENST00000396137.4_1_5:78621635-78621827:+|nuORF	ENST00000396137.4_1_5:78621635-78621827:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.20849546979997	2	376.208495	750.402438	1.845	0.00069411	-4.7598	-0.0017907	-2.9148	-0.0010966	376.206696516995	25.467	0.14477	25.467	25.419	25.564	0	1443	34	0.7487872	0.02040279	0.7487872	305.4194	0	8.321991						97	7	2	NaN	NaN	NaN	0.84692	1	4065	4065		1.4396	0	1	9648			24331	6791	14038	14440	19353	19353					0.017252884917070332
SKGGGESG	8	Unmodified	_SKGGGESG_					0	0	0			REV__ENST00000494735.1_1_7:142960709-142960961:+|nuORF	REV__ENST00000494735.1_1_7:142960709-142960961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.305308981	1	678.305309	677.298033	1.4486	0.00098261	6.3225	0.0042886	7.7711	0.0052712	678.3094396473737	19.37	0.16823	19.356	19.308	19.476	-0.014141	765	58	1.1628724	0.034381628	1.161353	237.62392	0	7.025635						141	8	2	NaN	NaN	NaN	0.84727	1	2701	2701		1.2418	0	1	9191.2	+		24332	12490	14039	14441	19354	19354					-0.05352458055654097
SKGGYGGG	8	Unmodified	_SKGGYGGG_					0	0	0		ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	ENSG00000158985|ENST00000505065|CDC42SE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	682.3154797368002	1	682.31548	681.308203	1.595	0.0010883	1.3318	0.00090871	2.9268	0.001997	682.3167558003969	28.314	0.04825	28.305	28.281	28.33	-0.0089779	1071	70	0.977233	0.042105794	0.97571355	199.66669	0	8.602997						74	3	2	NaN	NaN	NaN	0.84887	1	2778	2778		0.32989	0	1	4836.5			24333	4006	14040	14442	19355	19355					-0.04519850330416375
SKGKGAGG	8	Unmodified	_SKGKGAGG_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;FMN2|p.R94C|1|0.33|ENSG00000155816|chr1:240092389-240092389|C/T|missense_variant	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.3627642804001	1	661.362764	660.355488	1.1738	0.00077632	4.4275	0.0029282	5.6014	0.0037045	661.3664040625358	24.333	0.12065	24.333	24.261	24.381	0	699	133	1.2026466	0.07958245	1.2026466	245.87628	0	16.270325						282	6	2	NaN	NaN	NaN	0.84945	1	2310	2310		0	0	1	24791			24334	3888	14041	14443	19356	19356					0.011724289405719901
SKGPGIKP	8	Unmodified	_SKGPGIKP_					0	0	0			REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF	REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4723147298	1	783.472315	782.465038	-0.21978	-0.00017219	1.3067	0.0010237	1.0869	0.00085155	783.4729486426129	55.098	0.14405	55.097	55.025	55.169	-0.0006218	486	64	1.3303722	0.037636995	1.3288528	271.12662	0	7.670349						173	7	3	NaN	NaN	NaN	0.84756	1	4447	4447		1.072	0	1	24390	+		24335	11646	14042	14444	19357	19357					0.0651043455989111
SKGSGSKG	8	Unmodified	_SKGSGSKG_					0	0	0			REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3682435888	1	707.368244	706.360967	0.95503	0.00067556	-5.3345	-0.0037734	-4.3794	-0.0030979	707.3643010254341	20.694	0.19278	20.694	20.646	20.838	0	642	64	1.2369217	0.03785062	1.2369217	252.54935	0	7.72818						198	9	2	NaN	NaN	NaN	0.84782	1	3335	3335		0.92586	0	1	27709	+		24336	13513	14043	14445	19358	19358					-0.003958922676133625
SKGTTGSG	8	Unmodified	_SKGTTGSG_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3366091094001	1	694.336609	693.329333	1.0376	0.00072047	4.4751	0.0031072	5.5127	0.0038277	694.3395357965238	34.155	0.28953	34.155	34.01	34.3	0	642	73	1.2369217	0.043269396	1.2369217	252.63956	0	8.837723						331	13	3	NaN	NaN	NaN	0.84756	1	3112	3112		1.072	0	1	28587	+		24337	11266	14044	14446	19359	19359					-0.029598850215620587
SKGTTGSG	8	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	694.336609	693.329333	1.0376	0.00072047	4.4751	0.0031072	5.5127	0.0038277	694.3395357965238	34.155	0.28953	34.155	34.01	34.3	0	642	73	1.2369217	0.043269396	1.2369217	252.63956		8.837723	0.0012279	-3.7395E-06	0.00075972	NaN	1.072	331	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28587	+		24338	11266	14044	14446							-0.029598850215620587
SKGTTGSG	8	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	694.336609	693.329333	0.79292	0.00055056	4.4884	0.0031165	5.2814	0.003667	694.3404993798746	34.154	0.1931	34.153	34.08	34.274	-0.0012474	642	58	1.2369217	0.03424585	1.2354022	252.63956		6.9946594	-0.0012279	5.5181E-06	-0.00075972	NaN	1.072	262	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24268	+		24339	11266	14044	14446							-0.029598850215620587
SKKAGKAS	8	Unmodified	_SKKAGKAS_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.73487739579997	2	388.734877	775.455202	1.5696	0.00061017	-10.357	-0.0040263	-8.7878	-0.0034161	388.7312494472233	33.334	0.096504	33.331	33.331	33.428	-0.0024757	1458	37	0.7395112	0.022263587	0.73799175	301.4614	0	9.075745						48	5	2	NaN	NaN	NaN	0.84897	1	4362	4362		0.27539	0	1	2881.1			24340	1869	14045	14447	19360	19360					0.05849246554510046
SKKANESG	8	Unmodified	_SKKANESG_					0	0	0			REV__ENSG00000173838|ENST00000311269|MARCHF10	REV__ENSG00000173838|ENST00000311269|MARCHF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.4159220629001	1	820.415922	819.408646	2.0341	0.0016688	-3.4602	-0.0028388	-1.4261	-0.00117	820.4125084298677	55.22	0.12028	55.22	55.172	55.292	0	366	46	1.4019053	0.026769161	1.4019053	285.48276	0	5.451294						112	6	2	NaN	NaN	NaN	0.84727	1	5011	5011		1.2418	0	1	8972.5	+		24341	10689	14046	14448	19361	19361					-0.00828238067424536
SKKGSLYS	8	Unmodified	_SKKGSLYS_					0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.23999256344996	2	435.239993	868.465432	0.5955	0.00025918	1.6803	0.00073135	2.2758	0.00099054	435.2408952415014	35.53	0.14474	35.53	35.506	35.651	0	1401	58	0.77473325	0.035191536	0.77473325	315.2322	0	14.319122						154	7	2	NaN	NaN	NaN	0.83582	1	5644	5644		4.4131	0	1	36772	+		24342	10615	14047	14449	19362	19362					0.025938094890875618
SKKGSLYS	8	Unmodified						0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	435.239993	868.465432	0.5955	0.00025918	1.6803	0.00073135	2.2758	0.00099054	435.2408952415014	35.53	0.14474	35.53	35.506	35.651	0	1401	58	0.77473325	0.035191536	0.77473325	315.2322		14.319122	0.00049464	-0.00031679	-0.00016617	NaN	4.4131	154	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36772	+		24343	10615	14047	14449							0.025938094890875618
SKKGSLYS	8	Unmodified						0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	435.239993	868.465432	0.3347	0.00014568	2.3347	0.0010162	2.6694	0.0011618	435.2410649395382	35.529	0.1689	35.529	35.481	35.65	0.00053024	1398	58	0.77658504	0.035191536	0.7750656	315.9857		14.319122	-0.00049464	0.00025283	0.00016617	NaN	4.4131	161	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35246	+		24344	10615	14047	14449							0.025938094890875618
SKLLFRGH	8	Unmodified	_SKLLFRGH_					0	0	0			REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.5628610716001	1	957.562861	956.555585	1.5773	0.0015103	-1.8422	-0.001764	-0.26494	-0.0002537	957.5605218389144	53.242	0.14413	53.242	53.194	53.338	0	201	97	1.4997677	0.056790113	1.4997677	304.68835	0	11.5372925						248	7	3	NaN	NaN	NaN	0.84455	1	7261	7261		2.7852	0	1	25720	+		24345	12352	14048	14450	19363	19363					0.075569036081788
SKLLFRGH	8	Unmodified						0	0	0			REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	957.562861	956.555585	1.5773	0.0015103	-1.8422	-0.001764	-0.26494	-0.0002537	957.5605218389144	53.242	0.14413	53.242	53.194	53.338	0	201	97	1.4997677	0.056790113	1.4997677	304.68835		11.5372925	0.0010416	-0.00020986	-0.0001273	NaN	2.7852	248	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25720	+		24346	12352	14048	14450							0.075569036081788
SKLLFRGH	8	Unmodified						0	0	0			REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	REV__ENST00000475499.1_1_19:23945919-24014480:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	957.562861	956.555585	-0.2147	-0.00020559	-1.2022	-0.0011512	-1.4169	-0.0013568	957.5607144627436	53.24	0.14396	53.24	53.216	53.36	-0.00053787	198	61	1.5015416	0.03547871	1.5000222	305.04874		7.207733	-0.0010416	0.00040301	0.0001273	NaN	2.7852	144	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17764	+		24347	12352	14048	14450							0.075569036081788
SKLLYIALSW	10	Unmodified	_SKLLYIALSW_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3500743291	2	597.350074	1192.6856	1.4569	0.00087027	-0.58109	-0.00034711	0.87579	0.00052315	597.3496331523783	23.441	0.19304	23.427	23.355	23.548	-0.013294	1164	43	0.9204082	0.025705755	0.91888875	372.91833	0	10.4151						206	9	3	NaN	NaN	NaN	0.66626	1	15619	15619		10.36	1.4411	1	28981			24348	5674	14049	14451	19364	19364					0.09696035096658306
SKLPGQAA	8	Unmodified	_SKLPGQAA_					0	0	0			REV__nc|ENSG00000106278|P23471-3|PTPRZ1	REV__nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.2216028450499	2	386.221603	770.428653	1.5753	0.00060841	5.4214	0.0020939	6.9967	0.0027023	386.2239610927236	22.67	0.072378	22.67	22.621	22.694	0	1428	52	0.7580582	0.03150761	0.7580582	309.05692	0	12.8454895						83	4	2	NaN	NaN	NaN	0.80071	1	4363	4363		9.1232	0.83292	1	11622	+		24349	8984	14050	14452	19365	19365					0.03425557663172185
SKNEAPEGN	9	Unmodified	_SKNEAPEGN_					0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.21724574865	2	473.217246	944.419939	1.8249	0.00086356	-2.2502	-0.0010648	-0.42535	-0.00020128	473.2177364398892	26.07	0.16896	26.07	26.022	26.191	0	1323	91	0.8228144	0.055436254	0.8228144	334.37692	0	22.52829						280	8	3	NaN	NaN	NaN	0.35794	1	6923	6923		15.463	2.4598	1	36932			24350	2457	14051	14453	19366	19366					-0.054494607639526293
SKNEAPEGN	9	Unmodified						0	0	0		GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.217246	944.419939	1.1691	0.00055324	-0.25586	-0.00012108	0.91325	0.00043217	473.2184597093466	26.07	0.14483	26.059	26.011	26.156	-0.011137	1323	106	0.8228144	0.06468612	0.82129496	334.37692		26.287292	-0.005674	0.00087885	-0.00075972	NaN	15.463	283	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37344			24351	2457	14051	14453							-0.054494607639526293
SKNGGGGG	8	Unmodified	_SKNGGGGG_					0	0	0			REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15117755615006	2	317.151178	632.287802	1.1823	0.00037496	8.3505	0.0026484	9.5328	0.0030233	317.1535773332306	42.123	0.047981	42.123	42.099	42.147	0	1533	64	0.6930556	0.039065063	0.6930556	283.6304	0	15.987213						97	3	3	NaN	NaN	NaN	0.84897	1	1516	1516		0.27539	0	1	8637.9	+		24352	13309	14052	14454	19367	19367					-0.04305020990227604
SKNGGGGG	8	Unmodified						0	0	0			REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.151178	632.287802	1.1823	0.00037496	8.3505	0.0026484	9.5328	0.0030233	317.1535773332306	42.123	0.047981	42.123	42.099	42.147	0	1533	64	0.6930556	0.039065063	0.6930556	283.6304		15.987213	0.11623	-0.0010771	0.00075972	NaN	0.27539	97	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8637.9	+		24353	13309	14052	14454							-0.04305020990227604
SKNGGGGG	8	Unmodified						0	0	0			REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	REV__RUNDC3B|p.K21N|1|0.22|ENSG00000105784|chr7:87628886-87628886|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	317.151178	632.287802	1.0468	0.00033198	11.313	0.0035878	12.359	0.0039198	317.1552345085462	41.881	0.072079	41.89	41.842	41.914	0.0089989	1533	85	0.6930556	0.05208963	0.6915362	283.6304		21.317474	-0.11623	0.00080182	-0.00075972	NaN	0.27539	188	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23055	+		24354	13309	14052	14454							-0.04305020990227604
SKNQKYSEHFS	11	Unmodified	_SKNQKYSEHFS_					0	0	0		nc|ENSG00000168314|Q13875-3|MOBP;nc|ENSG00000168314|Q13875-2|MOBP;ENSG00000168314|ENST00000684792|MOBP;nc|ENSG00000168314|Q13875-4|MOBP	nc|ENSG00000168314|Q13875-3|MOBP	nc|ENSG00000168314|Q13875-3|MOBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.21771924096663	3	452.217719	1353.63133	1.6973	0.00076755	0.065886	2.9795E-05	1.7632	0.00079734	452.2180826894527	18.364	0.096008	18.364	18.364	18.46	0	1488	46	0.7209441	0.027861238	0.7209441	437.55377	0	16.909454						69	5	2	NaN	NaN	NaN	0.69801	1	19586	19586		3.3044	0	1	6437.5			24355	4613	14053	14455	19368	19368					-0.03134208792857862
SKNYGGAT	8	Unmodified	_SKNYGGAT_					0	0	0		tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.3788082751001	1	797.378808	796.371532	1.5974	0.0012737	5.3003	0.0042263	6.8977	0.0055	797.3834228764666	30.777	0.2413	30.777	30.728	30.97	0	483	100	1.3321642	0.059175372	1.3321642	271.41006	0	12.056183						617	11	5	NaN	NaN	NaN	0.83913	1	4708	4708		3.9685	0.39873	1	136160			24356	13896	14054	14456	19369	19369					-0.034799096131791885
SKNYGGAT	8	Unmodified						0	0	0		tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	tr|U7SV46|U7SV46_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01511PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	797.378808	796.371532	1.6319	0.0013012	5.7068	0.0045505	7.3386	0.0058517	797.3834967809133	30.993	0.48272	30.988	30.771	31.253	-0.0050716	483	100	1.3321642	0.059175372	1.3306447	271.41006		12.056183	0.10553	9.2618E-05	-0.00075972	NaN	3.9685	805	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150870			24357	13896	14054	14456							-0.034799096131791885
SKPAKSTESTG	11	Unmodified	_SKPAKSTESTG_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7802101462	2	546.78021	1091.54587	1.1218	0.00061336	-7.6514	-0.0041836	-6.5296	-0.0035703	546.7766570550763	20.694	0.09635	20.694	20.622	20.718	0	1212	43	0.8910048	0.02575022	0.8910048	361.3874	0	10.444153						98	5	3	NaN	NaN	NaN	0.63477	1	12466	12466		11.739	0	1	10590	+		24358	10069	14055	14457	19370	19370					0.0037562602146863355
SKPAKSTESTG	11	Unmodified						0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.78021	1091.54587	1.1218	0.00061336	-7.6514	-0.0041836	-6.5296	-0.0035703	546.7766570550763	20.694	0.09635	20.694	20.622	20.718	0	1212	43	0.8910048	0.02575022	0.8910048	361.3874		10.444153	-0.14965	0.00067401	0.010882	NaN	11.739	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10590	+		24359	10069	14055	14457							0.0037562602146863355
SKPAKSTESTG	11	Unmodified						0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.78021	1091.54587	1.5159	0.00082887	-9.1075	-0.0049798	-7.5916	-0.0041509	546.7755723586388	21.007	0.048132	20.993	20.969	21.017	-0.014086	1245	40	0.87076044	0.023935497	0.869241	353.1764		9.708099	0.14965	-0.00091827	-0.010882	NaN	11.739	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4404.6	+		24360	10069	14055	14457							0.0037562602146863355
SKPVLQSQS	9	Unmodified	_SKPVLQSQS_					0	0	0		nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.5312861717001	1	973.531286	972.52401	-0.16308	-0.00015876	3.9902	0.0038846	3.8271	0.0037258	973.5378194369204	53.24	0.16793	53.24	53.216	53.384	-0.00053787	168	97	1.5192716	0.056729794	1.5177522	308.57874	0	11.5224						467	8	6	NaN	NaN	NaN	0.6532	1	7532	7532		3.2116	0.058268	1	67971			24361	5346	14056	14458	19371	19371					0.03664866063570571
SKPVLQSQS	9	Unmodified						0	0	0		nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	nc|ENSG00000184305|Q9C0I3-2|CCSER1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	973.531286	972.52401	2.1607	0.0021035	2.2751	0.0022149	4.4359	0.0043185	973.5356247189898	53.242	0.16813	53.242	53.194	53.362	0	171	199	1.5174994	0.117117405	1.5174994	308.21878		23.787659	0.0010416	-0.00086841	-0.00012636	NaN	3.2116	738	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117830			24362	5346	14056	14458							0.03664866063570571
SKQRLINLFF	10	Unmodified	_SKQRLINLFF_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3718724037	2	633.371872	1264.72919	1.3705	0.00086806	-6.225	-0.0039427	-4.8544	-0.0030747	633.3680431955556	32.563	0.12063	32.563	32.466	32.587	0	1038	61	0.997351	0.036552608	0.997351	403.82965	0	14.800262						181	6	3	NaN	NaN	NaN	0.77884	1	18112	18112		0.79988	0	1	22832	+		24363	8456	14057	14459	19372	19372					0.1074164459378153
SKSAGGIL	8	Unmodified	_SKSAGGIL_					0	0	0		ENST00000371222.3_1_1:59248915-59249104:-|nuORF	ENST00000371222.3_1_1:59248915-59249104:-|nuORF	ENST00000371222.3_1_1:59248915-59249104:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.4250301862002	1	732.42503	731.417754	1.0918	0.00079963	4.859	0.0035588	5.9507	0.0043585	732.4284006222089	29.979	0.24131	29.973	29.876	30.118	-0.0064087	531	64	1.3034686	0.03770125	1.3019491	265.96307	0	7.6926575						235	11	2	NaN	NaN	NaN	0.81756	1	3700	3700		6.8632	1.9535	1	29369			24364	6655	14058	14460	19373	19373					0.041301552889080995
SKSGGSGS	8	Unmodified	_SKSGGSGS_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.305308981	1	666.305309	665.298033	1.321	0.00088021	1.2056	0.00080332	2.5267	0.0016835	666.3060743617921	37.024	0.072163	37.024	36.976	37.048	0	720	52	1.1900014	0.030729651	1.1900014	243.25435	0	6.281601						77	4	2	NaN	NaN	NaN	0.84756	1	2451	2451		1.072	0	1	5875.2			24365	4094	14059	14461	19374	19374					-0.048004580556607834
SKSGGSGS	8	Unmodified	_SKSGGSGS_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.305308981	1	666.305309	665.298033	2.1167	0.0014103	5.8998	0.0039311	8.0165	0.0053414	666.30927457265	19.563	0.43319	19.549	19.452	19.885	-0.014141	786	103	1.1501974	0.061627507	1.148678	235.11778	0	12.597595						838	19	4	NaN	NaN	NaN	0.84727	1	2376	2376		1.2418	0	1	238210			24366	4094	14059	14461	19375	19375					-0.048004580556607834
SKSGSSGT	8	Unmodified	_SKSGSSGT_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3315237315002	1	710.331524	709.324247	0.74248	0.00052741	4.3341	0.0030787	5.0766	0.0036061	710.3349683932153	33.986	0.16897	33.986	33.938	34.107	0	618	115	1.2513325	0.06848061	1.2513325	255.47133	0	13.980957						417	8	4	NaN	NaN	NaN	0.84887	1	3411	3411		0.32989	0	1	82337			24367	3886	14060	14462	19376	19376					-0.042041888841708897
SKSGSSGT	8	Unmodified	_SKSGSSGT_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	710.3315237315002	1	710.331524	709.324247	1.3325	0.0009465	4.0627	0.0028859	5.3952	0.0038324	710.3347618474921	34.589	0.19307	34.589	34.517	34.71	0	660	67	1.2261056	0.039676428	1.2261056	250.321	0	8.100296						273	9	3	NaN	NaN	NaN	0.84887	1	3412	3412		0.32989	0	1	40525			24368	3886	14060	14462	19377	19377					-0.042041888841708897
SKSGSSGT	8	Unmodified	_SKSGSSGT_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3315237315002	1	710.331524	709.324247	0.83806	0.0005953	4.7877	0.0034008	5.6258	0.0039961	710.3348111572366	34.154	0.19301	34.153	34.129	34.322	-0.0012474	648	94	1.2333171	0.055856824	1.2317977	251.7933	0	11.403702						260	9	2	NaN	NaN	NaN	0.84887	1	3345	3345		0.32989	0	1	42156			24369	3886	14060	14462	19378	19378					-0.042041888841708897
SKSGSSGT	8	Unmodified						0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	710.331524	709.324247	0.79438	0.00056428	4.7559	0.0033782	5.5502	0.0039425	710.3354050995572	33.985	0.14483	33.984	33.936	34.08	-0.0012474	615	118	1.2531329	0.07027149	1.2516136	255.83891		14.346588	-0.001239	0.00015233	0.00014052	NaN	0.32989	400	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80860			24370	3886	14060	14462							-0.042041888841708897
SKSGVGGG	8	Unmodified	_SKSGVGGG_					0	0	0		tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	tr|U7T676|U7T676_FUSNUGlutaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glsAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3311298010002	1	648.33113	647.323853	2.1104	0.0013682	4.8943	0.0031731	7.0047	0.0045414	648.3346658344184	26.384	0.072403	26.384	26.336	26.408	0	660	34	1.2261056	0.019837141	1.2261056	250.7747	0	4.057266						61	4	2	NaN	NaN	NaN	0.84945	1	1993	1993		0	0	1	4114.6			24371	13999	14061	14463	19379	19379					-0.013915638133653374
SKSSSGSG	8	Unmodified	_SKSSSGSG_					0	0	0		nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3158736673001	1	696.315874	695.308597	1.1518	0.00080201	6.4344	0.0044804	7.5862	0.0052824	696.3203969117963	19.37	0.21637	19.356	19.284	19.5	-0.014141	768	52	1.1610622	0.030775785	1.1595428	237.13231	0	6.285568						180	10	2	NaN	NaN	NaN	0.84887	1	3075	3075		0.32989	0	1	23061			24372	2896	14062	14464	19380	19380					-0.051244754012259364
SKSSSYKF	8	Unmodified	_SKSSSYKF_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4676232824	1	933.467623	932.460347	1.8721	0.0017476	4.5541	0.0042511	6.4262	0.0059986	933.4711041951596	26.505	0.072388	26.505	26.481	26.553	0	306	67	1.4375578	0.039176106	1.4375578	292.15707	0	7.9618225						140	4	3	NaN	NaN	NaN	0.42133	1	6661	6661		35.296	8.5649	1	14833			24373	5822	14063	14465	19381	19381					-0.008584943735286288
SKSSSYKF	8	Unmodified						0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	933.467623	932.460347	1.4486	0.0013522	5.5437	0.0051749	6.9923	0.0065271	933.4715427206314	26.504	0.16888	26.494	26.446	26.614	-0.010645	303	73	1.4393384	0.042733073	1.437819	292.51895		8.684692	-0.0054718	0.00054697	0.0001306	NaN	35.296	171	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14305			24374	5822	14063	14465							-0.008584943735286288
SKSTLGGVN	9	Unmodified	_SKSTLGGVN_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.73507436105007	2	431.735074	861.455596	1.2012	0.00051859	2.4651	0.0010643	3.6662	0.0015828	431.7361855986197	29.57	0.096537	29.57	29.546	29.642	0	1386	37	0.78399014	0.022208154	0.78399014	319.03912	0	9.037445						59	5	2	NaN	NaN	NaN	0.61413	1	5551	5551		4.9097	1.7564	1	5412			24375	3941	14064	14466	19382	19382					0.019326214837292355
SKSTLGGVN	9	Unmodified						0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	431.735074	861.455596	1.0523	0.00045433	3.4245	0.0014785	4.4769	0.0019328	431.7361464716004	29.569	0.096546	29.562	29.562	29.659	-0.0070667	1386	40	0.78399014	0.02406013	0.7824707	319.03912		9.791077	-0.0039531	0.00034979	-0.00075972	NaN	4.9097	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6185.2			24376	3941	14064	14466							0.019326214837292355
SKSTTSIC	8	Unmodified	_SKSTTSIC_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	826.3974948067	1	826.397495	825.390218	1.0517	0.00086914	0.63633	0.00052586	1.688	0.001395	826.3982231411757	39.694	0.048199	39.694	39.694	39.742	0	480	52	1.3339561	0.030458331	1.3339561	271.61316	0	6.201782						79	3	2	NaN	NaN	NaN	0.83211	1	5095	5095		4.9097	0.49665	1	8409.1	+		24377	11186	14065	14467	19383	19383					-0.029461160336495595
SKTKKIKTKGK	11	Unmodified	_SKTKKIKTKGK_					0	0	0		tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1	tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1	tr|U7T5J7|U7T5J7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00082PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1246.8205323211998	1	1246.82053	1245.81326	2.0473	0.0025526	3.1313	0.0039041	5.1785	0.0064567	1246.8264869462507	41.665	0.09634	41.673	41.673	41.769	0.0082588	63	34	1.5811787	0.019419432	1.5796592	320.1667	0	3.9321594						49	5	2	NaN	NaN	NaN	0.77843	1	16925	16925		0.51604	0.2859	1	2531.7			24378	13990	14066	14468	19384	19384					0.20018175690688622
SKWAEACTIY	10	Unmodified	_SKWAEACTIY_					0	0	0		ENST00000522013.5_1_5:138211333-138211408:+|nuORF	ENST00000522013.5_1_5:138211333-138211408:+|nuORF	ENST00000522013.5_1_5:138211333-138211408:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.2762490715	2	586.276249	1170.53795	1.8397	0.0010786	-1.5332	-0.00089887	0.30652	0.0001797	586.2756507791654	23.103	0.024036	23.09	23.065	23.09	-0.013294	1179	61	0.9112251	0.036750257	0.90970564	369.27756	0	14.893188						56	2	2	NaN	NaN	NaN	0.72631	1	14959	14959		6.2502	0.55606	1	6349.4			24379	7402	14067	14469	19385	19385					-0.040502244996559966
SKYGCESCYY	10	Unmodified	_SKYGCESCYY_					0	0	0			REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.48794177130003	3	401.487942	1201.442	3.579	0.0014369	-2.1122	-0.00084804	1.4668	0.00058888	401.8224263565181	34.829	0.04821	34.828	34.78	34.828	-0.0006485	1491	28	0.7190863	0.016718566	0.71756685	436.9837	0	10.159729						22	3	2	NaN	NaN	NaN	0.77513	1	15859	15859		0.63172	0	1	890.4	+		24380	13610	14068	14470	19386	19386					-0.15066740402039613
SLADIMAKR	9	Unmodified	_SLADIMAKR_					0	0	0		ENST00000446071.1_1_9:72832122-72832404:+|nuORF;ENSG00000114391|ENST00000394077|RPL24	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.78150162490005	2	502.781502	1003.54845	2.1827	0.0010974	-2.4083	-0.0012108	-0.22553	-0.00011339	502.7805846021472	18.221	0.14383	18.221	18.197	18.34	0	1254	46	0.8652351	0.027635753	0.8652351	351.31863	0	11.221161						164	7	3	NaN	NaN	NaN	0.074859	1	8738	8738		39.459	21.66	1	22582			24381	1956	14069	14471	19387	19387					0.04681802945447089
SLADIMAKR	9	Unmodified	_SLADIMAKR_					0	0	0		ENST00000446071.1_1_9:72832122-72832404:+|nuORF;ENSG00000114391|ENST00000394077|RPL24	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.78150162490005	2	502.781502	1003.54845	1.9118	0.00096119	-1.4148	-0.00071133	0.49697	0.00024987	502.78074551067556	18.266	0.11999	18.252	18.228	18.348	-0.01395	1257	37	0.86339295	0.022107422	0.8618735	350.57062	0	8.976471						160	6	3	NaN	NaN	NaN	0.017076	1	8566	8566		75.698	33.381	1	22746			24382	1956	14069	14471	19388	19388					0.04681802945447089
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.4719803788001	1	786.47198	785.464704	1.5543	0.0012224	-0.39883	-0.00031367	1.1554	0.00090872	786.471017412526	27.205	0.048262	27.205	27.181	27.229	0	486	46	1.3303722	0.026883483	1.3303722	271.10876	0	5.4784546						72	3	2	NaN	NaN	NaN	0.3389	1	4573	4573		16.417	0	1	8107.9			24383	4377	14070	14472	19389	19389					0.0633901484004582
SLASGAGG	8	Unmodified	_SLASGAGG_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3045806995002	1	619.304581	618.297304	0.55653	0.00034466	4.4613	0.0027629	5.0179	0.0031076	619.3068286029892	33.166	0.096523	33.166	33.166	33.262	0	1266	37	0.85786515	0.022114575	0.85786515	175.62894	0	4.527481						85	5	2	NaN	NaN	NaN	0.84945	1	1110	1110		0	0	1	11358			24384	5714	14071	14473	19390	19390					-0.02711252704693834
SLASGAGG	8	Unmodified	_SLASGAGG_					0	0	0		ENST00000561781.1_1_16:675886-677619:+|nuORF;nc|ENSG00000197562|Q96S21-2|RAB40C;ENSG00000197562|ENST00000248139|RAB40C	ENST00000561781.1_1_16:675886-677619:+|nuORF	ENST00000561781.1_1_16:675886-677619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3045806995002	1	619.304581	618.297304	0.43089	0.00026685	5.1237	0.0031731	5.5546	0.00344	619.307849277549	33.189	0.14479	33.186	33.138	33.283	-0.0024796	1266	40	0.85786515	0.02395612	0.8563457	175.62894	0	4.9044952						105	7	2	NaN	NaN	NaN	0.84945	1	1045	1045		0	0	1	12013			24385	5714	14071	14473	19391	19391					-0.02711252704693834
SLAVGNSG	8	Unmodified	_SLAVGNSG_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3573445515002	1	704.357345	703.350068	0.72767	0.00051254	5.0794	0.0035777	5.807	0.0040902	704.3608388258881	30.269	0.28954	30.263	30.214	30.504	-0.0064106	642	115	1.2369217	0.06854653	1.2354022	252.56985	0	13.996689						413	13	4	NaN	NaN	NaN	0.78264	1	3218	3218		11.548	0	1	57464			24386	3652	14072	14474	19392	19392					-0.013472946418914944
SLCGSATF	8	Unmodified	_SLCGSATF_					0	0	0		ENST00000544551.5_1_11:110100909-110101011:-|nuORF	ENST00000544551.5_1_11:110100909-110101011:-|nuORF	ENST00000544551.5_1_11:110100909-110101011:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.3498163326001	1	785.349816	784.34254	1.3787	0.0010827	-3.0378	-0.0023857	-1.6591	-0.001303	785.3475405986978	27.566	0.072414	27.557	27.533	27.605	-0.009552	558	49	1.2873057	0.028747797	1.2857863	262.33896	0	5.85849						99	4	2	NaN	NaN	NaN	0.77489	1	4464	4464		12.588	1.9829	1	10831			24387	7515	14073	14475	19393	19393					-0.058257702338323725
SLCGSATF	8	Unmodified						0	0	0		ENST00000544551.5_1_11:110100909-110101011:-|nuORF	ENST00000544551.5_1_11:110100909-110101011:-|nuORF	ENST00000544551.5_1_11:110100909-110101011:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.349816	784.34254	1.6515	0.001297	-3.337	-0.0026207	-1.6855	-0.0013237	785.3471877676578	27.543	0.16892	27.543	27.519	27.688	0	558	55	1.2873057	0.03234136	1.2873057	262.33896		6.59079	-0.0068991	-8.8292E-05	0.00075972	NaN	12.588	172	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18415			24388	7515	14073	14475							-0.058257702338323725
SLCPKCRA	8	Unmodified	_SLCPKCRA_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4382541844	1	877.438254	876.430978	1.3876	0.0012175	-6.828	-0.0059912	-5.4405	-0.0047737	877.4319408808597	29.329	0.096521	29.329	29.305	29.401	0	396	52	1.3840506	0.030380487	1.3840506	281.54428	0	6.180023						76	5	2	NaN	NaN	NaN	0.80692	1	5751	5751		8.2903	0.74991	1	6226.6			24389	3849	14074	14476	19394	19394					-0.012180531950207296
SLCPKCRA	8	Unmodified						0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	877.438254	876.430978	1.2339	0.0010826	-5.1192	-0.0044917	-3.8853	-0.0034091	877.4333339762095	29.328	0.048269	29.32	29.296	29.344	-0.0077209	396	43	1.3840506	0.02500999	1.3825312	281.54428		5.0875244	-0.0042606	0.0005849	-0.00075972	NaN	8.2903	61	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6194			24390	3849	14074	14476							-0.012180531950207296
SLCSFQQF	8	Unmodified	_SLCSFQQF_					0	0	0			REV__nc|ENSG00000150093|P05556-4|ITGB1	REV__nc|ENSG00000150093|P05556-4|ITGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.21820287635	2	480.218203	958.421853	2.362	0.0011343	-11.97	-0.0057484	-9.6085	-0.0046142	480.2131953875584	15.412	0.09594	15.4	15.376	15.472	-0.012201	1368	43	0.7950918	0.025889874	0.79357237	323.0433	0	10.518951						53	5	2	NaN	NaN	NaN	0.81756	1	7147	7147		6.8632	0.77288	1	4258.8	+		24391	13140	14075	14477	19395	19395					-0.05902123279690841
SLDAEIDLL	9	Unmodified	_SLDAEIDLL_					0	0	0		ENST00000476870.5_1_7:100465042-100470283:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5197184324	1	988.519718	987.512442	1.3179	0.0013028	1.1852	0.0011716	2.5031	0.0024744	988.5198924284314	30.197	0.096542	30.19	30.166	30.263	-0.0064106	213	64	1.4926696	0.03727448	1.4911501	303.11133	0	7.5691833						105	5	2	NaN	NaN	NaN	0.094712	1	7966	7966		36.586	2.8882	1	14416			24392	998	14076	14478	19396	19396					0.01818624249574441
SLDAEIDLL	9	Unmodified						0	0	0		ENST00000476870.5_1_7:100465042-100470283:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.519718	987.512442	2.1505	0.0021258	1.7017	0.0016822	3.8522	0.003808	988.5215605212999	30.198	0.096498	30.198	30.198	30.294	0	216	70	1.4908947	0.040832996	1.4908947	302.7509		8.29184	0.0037016	0.00018017	-0.00012777	NaN	36.586	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14495			24393	998	14076	14478							0.01818624249574441
SLDAVMPHL	9	Unmodified	_SLDAVMPHL_					0	0	0		nc|ENSG00000196470|Q8IUQ4-2|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5026285802002	1	982.502629	981.495352	1.813	0.0017813	-11.68	-0.011475	-9.8668	-0.0096941	982.4911199163186	29.594	0.21719	29.594	29.546	29.763	0	231	61	1.4820169	0.03552389	1.4820169	300.97357	0	7.2143555						219	10	2	NaN	NaN	NaN	0.45297	1	7937	7937		11.548	2.4253	1	24478			24394	5628	14077	14479	19397	19397					0.0038642516278741823
SLDSPISVV	9	Unmodified	_SLDSPISVV_					0	0	0		nc|ENSG00000204930|A6H8Z2-3|FAM221B;ENSG00000204930|ENST00000423537|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4985890598001	1	916.498589	915.491313	2.2578	0.0020693	-1.6075	-0.0014732	0.65035	0.00059604	916.4979438129482	23.995	0.048233	23.982	23.982	24.03	-0.013048	384	40	1.3911947	0.023214817	1.3896753	282.8109	0	4.719269						50	3	2	NaN	NaN	NaN	0.55027	1	6216	6216		7.5404	0.67717	1	3549.2			24395	5909	14078	14480	19398	19398					0.030186589407207975
SLDSSGGR	8	Unmodified	_SLDSSGGR_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.6881241684501	2	389.688124	777.361695	2.5649	0.00099953	-5.3238	-0.0020746	-2.7588	-0.0010751	389.6872669479798	29.666	0.048275	29.659	29.635	29.683	-0.0070648	1608	28	0.6464737	0.016793251	0.64495426	263.52347	0	6.845459						29	3	2	NaN	NaN	NaN	0.84727	1	4378	4378		1.2418	0.84618	1	1689.7	+		24396	9583	14079	14481	19399	19399					-0.035890976185442014
SLEDADDDYSC	11	Unmodified	_SLEDADDDYSC_					0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.48016897146664	3	411.480169	1231.41868	1.3448	0.00055337	8.5221	0.0035067	9.867	0.0040601	411.81751829012336	28.725	0.07239	28.725	28.725	28.798	0	1491	40	0.7190863	0.024151623	0.7190863	436.86304	0	14.672699						71	4	2	NaN	NaN	NaN	0.75405	1	17287	17287		3.9087	2.5775	1	6436.5	+		24397	8773	14080	14482	19400	19400					-0.18777507705681273
SLEDADDDYSC	11	Unmodified						0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	411.480169	1231.41868	1.3448	0.00055337	8.5221	0.0035067	9.867	0.0040601	411.81751829012336	28.725	0.07239	28.725	28.725	28.798	0	1491	40	0.7190863	0.024151623	0.7190863	436.86304		14.672699	-0.0075204	-0.0002976	0.0016887	NaN	3.9087	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6436.5	+		24398	8773	14080	14482							-0.18777507705681273
SLEDADDDYSC	11	Unmodified						0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	411.480169	1231.41868	1.1167	0.0004595	9.3437	0.0038448	10.46	0.0043043	411.8184709678328	28.749	0.14477	28.74	28.692	28.837	-0.0083504	1494	43	0.7172283	0.02600807	0.71570885	435.73422		15.800568	0.0075204	0.00071661	-0.0016887	NaN	3.9087	82	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7548.4	+		24399	8773	14080	14482							-0.18777507705681273
SLEKELQAQKE	11	Unmodified	_SLEKELQAQKE_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8486240623998	2	651.848624	1301.6827	1.5214	0.00099169	-0.38849	-0.00025324	1.1329	0.00073845	651.8482387942277	16.467	0.095856	16.454	16.43	16.526	-0.012995	1086	43	0.9680805	0.025633812	0.9665611	391.85773	0	10.375977						115	5	3	NaN	NaN	NaN	0.47586	1	17976	17976		19.336	1.3667	1	12515	+		24400	9683	14081	14483	19401	19401					0.04392115181144618
SLEKELQAQKE	11	Unmodified						0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	651.848624	1301.6827	1.588	0.0010351	-0.58825	-0.00038345	0.99971	0.00065166	651.8484499525158	16.446	0.071945	16.446	16.422	16.494	0	1083	40	0.9699114	0.023801506	0.9699114	392.59885		9.634308	-0.0039558	-0.00016057	0.0016752	NaN	19.336	79	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9783	+		24401	9683	14081	14483							0.04392115181144618
SLEKELQAQKE	11	Unmodified						0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	651.848624	1301.6827	1.5214	0.00099169	-0.38849	-0.00025324	1.1329	0.00073845	651.8482387942277	16.467	0.095856	16.454	16.43	16.526	-0.012995	1086	43	0.9680805	0.025633812	0.9665611	391.85773		10.375977	0.0039558	9.9856E-05	-0.0016752	NaN	19.336	115	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12515	+		24402	9683	14081	14483							0.04392115181144618
SLEPSVSSL	9	Unmodified	_SLEPSVSSL_					0	0	0			REV__DOT1L|p.M707V|1|0.31|ENSG00000104885|chr19:2216476-2216476|A/G|missense_variant	REV__DOT1L|p.M707V|1|0.31|ENSG00000104885|chr19:2216476-2216476|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4778536177001	1	918.477854	917.470577	1.7209	0.0015806	0.43114	0.00039599	2.1521	0.0019766	918.4782180875043	21.681	0.096338	21.667	21.643	21.74	-0.013895	351	49	1.4108255	0.028543234	1.409306	286.7924	0	5.8022766						87	5	2	NaN	NaN	NaN	0.31737	1	6237	6237		17.799	0	1	6501.6	+		24403	8326	14082	14484	19402	19402					0.008540685610569199
SLFPKRIQSTV	11	Unmodified	_SLFPKRIQSTV_					0	0	0		ENST00000361357.7_1_17:61772754-61773267:+|nuORF	ENST00000361357.7_1_17:61772754-61773267:+|nuORF	ENST00000361357.7_1_17:61772754-61773267:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.91883352746663	3	425.918834	1274.73467	1.231	0.00052432	7.2209	0.0030755	8.452	0.0035999	425.92203396147914	19.322	0.21626	19.308	19.212	19.428	-0.014141	1452	40	0.74322224	0.024117589	0.7417028	451.35635	0	14.646545						302	10	4	NaN	NaN	NaN	0.67644	1	17508	17508		9.0037	0.54746	1	56684			24404	6605	14083	14485	19403	19403					0.10829323385587486
SLGAVSST	8	Unmodified	_SLGAVSST_					0	0	0		ENSG00000235169|ENST00000642557|SMIM1	ENSG00000235169|ENST00000642557|SMIM1	ENSG00000235169|ENST00000642557|SMIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3726602647001	1	721.37266	720.365384	1.2789	0.00092255	4.199	0.003029	5.4779	0.0039516	721.375638678977	27.736	0.12066	27.736	27.712	27.833	0	606	49	1.2585332	0.028796911	1.2585332	256.86682	0	5.8774567						114	6	2	NaN	NaN	NaN	0.84727	1	3592	3592		1.2418	0	1	11991			24405	6049	14084	14486	19404	19404					-0.005984278447044744
SLGAVSST	8	Unmodified						0	0	0		ENSG00000235169|ENST00000642557|SMIM1	ENSG00000235169|ENST00000642557|SMIM1	ENSG00000235169|ENST00000642557|SMIM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.37266	720.365384	1.3283	0.00095817	4.7079	0.0033961	6.0362	0.0043543	721.3757439853922	28.025	0.072386	28.016	28.016	28.088	-0.0089779	606	46	1.2585332	0.026992798	1.2570138	256.86682		5.5092316	0.13991	0.00025865	-0.00075972	NaN	1.2418	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5516			24406	6049	14084	14486							-0.005984278447044744
SLGCLHSVLSL	11	Unmodified	_SLGCLHSVLSL_					0	0	0		ENST00000372980.3_1_20:42815966-42816209:-|nuORF	ENST00000372980.3_1_20:42815966-42816209:-|nuORF	ENST00000372980.3_1_20:42815966-42816209:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.8077163754001	2	564.807716	1127.60088	0.99421	0.00056154	1.2272	0.00069315	2.2214	0.0012547	564.8086111677209	29.811	0.21712	29.803	29.755	29.972	-0.0070648	1230	64	0.8799654	0.038639963	0.878446	356.76755	0	15.665924						194	10	3	NaN	NaN	NaN	0.29515	1	13563	13563		25.801	2.6834	1	29552			24407	6667	14085	14487	19405	19405					0.042183412884014615
SLGCLHSVLSL	11	Unmodified						0	0	0		ENST00000372980.3_1_20:42815966-42816209:-|nuORF	ENST00000372980.3_1_20:42815966-42816209:-|nuORF	ENST00000372980.3_1_20:42815966-42816209:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.807716	1127.60088	1.9437	0.0010978	0.88295	0.0004987	2.8266	0.0015965	564.8087016058366	29.787	0.19306	29.787	29.763	29.956	0	1230	43	0.8799654	0.02576691	0.8799654	356.76755		10.446777	-0.0080993	-0.00017762	0.00075972	NaN	25.801	133	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20794			24408	6667	14085	14487							0.042183412884014615
SLGGGLPV	8	Unmodified	_SLGGGLPV_					0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.2054214646	2	350.205421	698.39629	2.2235	0.00077867	0.073744	2.5826E-05	2.2972	0.00080449	350.20535661408536	18.245	0.047932	18.245	18.221	18.268	0	1425	106	0.7599118	0.06493205	0.7599118	310.3697	0	26.520111						102	3	2	NaN	NaN	NaN	0.84651	1	3197	3197		1.6704	0.2308	1	18136	+		24409	9037	14086	14488	19406	19406					0.035027702601951205
SLGGMHGG	8	Unmodified	_SLGGMHGG_					0	0	0			REV__ENSG00000139880|ENST00000487137|CDH24;REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.1632306864	2	358.163231	714.311908	1.7017	0.00060947	1.8234	0.00065307	3.525	0.0012625	358.1646862119633	53.828	0.16867	53.828	53.731	53.9	0	1521	37	0.70049703	0.022319257	0.70049703	285.98074	0	9.111908						157	8	3	NaN	NaN	NaN	0.84876	1	3500	3500		0.39566	0	1	17089	+		24410	13130;9781	14087	14489	19407	19407					-0.056675038282151036
SLGNLAALML	10	Unmodified	_SLGNLAALML_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.7862526518	2	501.786253	1001.55795	2.3079	0.0011581	-12.139	-0.0060912	-9.8312	-0.0049331	501.7812453246562	17.09	0.048063	17.077	17.053	17.101	-0.013294	1308	37	0.83204526	0.0221529	0.8305259	337.8514	0	8.995178						41	3	2	NaN	NaN	NaN	0.68669	1	8492	8492		8.962	1.4216	1	3097.7	+		24411	10043	14088	14490	19408	19408					0.05723571230964808
SLGNLAALML	10	Unmodified						0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.786253	1001.55795	1.8452	0.00092591	-15.086	-0.0075699	-13.241	-0.006644	501.77833710739986	17.069	0.1201	17.069	17.021	17.141	0	1311	46	0.83019954	0.027680635	0.83019954	337.10196		11.239685	-0.0036524	-0.0011845	-0.00016317	NaN	8.962	88	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6063.5	+		24412	10043	14088	14490							0.05723571230964808
SLGNLAALML	10	Unmodified						0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.786253	1001.55795	2.3079	0.0011581	-12.139	-0.0060912	-9.8312	-0.0049331	501.7812453246562	17.09	0.048063	17.077	17.053	17.101	-0.013294	1308	37	0.83204526	0.0221529	0.8305259	337.8514		8.995178	0.0036524	0.0017728	0.00016317	NaN	8.962	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3097.7	+		24413	10043	14088	14490							0.05723571230964808
SLGSSGSF	8	Unmodified	_SLGSSGSF_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3413601363001	1	741.34136	740.334084	1.5888	0.0011778	5.3422	0.0039604	6.931	0.0051382	741.3453319571198	24.888	0.1448	24.875	24.851	24.996	-0.012394	579	61	1.2747238	0.035961628	1.2732043	260.04028	0	7.3360596						202	7	3	NaN	NaN	NaN	0.80692	1	3837	3837		8.2903	0	1	15237			24414	5038	14089	14491	19409	19409					-0.0464700087879919
SLGVGAMLFRA	11	Unmodified	_SLGVGAMLFRA_					0	0	0			REV__ENST00000487138.5_1_2:95944617-95954741:+|nuORF	REV__ENST00000487138.5_1_2:95944617-95954741:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.54270964876673	3	374.54271	1120.6063	1.2427	0.00046545	6.2608	0.0023449	7.5035	0.0028104	374.5449832841767	14.573	0.096007	14.573	14.549	14.645	0	1509	31	0.70793515	0.018589258	0.70793515	430.55878	0	11.305817						80	5	2	NaN	NaN	NaN	0.59385	1	13713	13713		7.2894	0	1	9698.6	+		24415	10105	14090	14492	19410	19410					0.05082064870885006
SLHGFLEKL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLHGFLEKL_					1	0	0			REV__ENSG00000213341|ENST00000370397|CHUK	REV__ENSG00000213341|ENST00000370397|CHUK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.3031241365002	2	543.303124	1084.5917	1.6197	0.00088	-0.74811	-0.00040645	0.8716	0.00047354	543.3027154807593	26.867	0.19303	26.867	26.819	27.012	0	1212	70	0.8910048	0.042315364	0.8910048	361.41623	0	17.164276						473	9	5	NaN	NaN	NaN	0.028349	1	12179	12179		61.271	11.31	1	262390	+		24416	11282	14091	14493	19411	19411					0.052783159944056024
SLHGFLEKL	9	Acetyl (Protein N-term)						1	0	0			REV__ENSG00000213341|ENST00000370397|CHUK	REV__ENSG00000213341|ENST00000370397|CHUK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.303124	1084.5917	1.6197	0.00088	-0.74811	-0.00040645	0.8716	0.00047354	543.3027154807593	26.867	0.19303	26.867	26.819	27.012	0	1212	70	0.8910048	0.042315364	0.8910048	361.41623		17.164276	-0.0063395	-0.00018208	0.00075972	NaN	61.271	473	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262390	+		24417	11282	14091	14493							0.052783159944056024
SLHGFLEKL	9	Acetyl (Protein N-term)						1	0	0			REV__ENSG00000213341|ENST00000370397|CHUK	REV__ENSG00000213341|ENST00000370397|CHUK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.303124	1084.5917	1.5634	0.0008494	-0.35655	-0.00019372	1.2069	0.00065569	543.3028228720501	26.891	0.26553	26.88	26.832	27.097	-0.010643	1212	73	0.8910048	0.044162333	0.88948536	361.41623		17.913452	0.0063395	0.00024339	-0.00075972	NaN	61.271	515	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261750	+		24418	11282	14091	14493							0.052783159944056024
SLIADGVF	8	Unmodified	_SLIADGVF_					0	0	0			REV__nc|ENSG00000101400|Q13424-2|SNTA1	REV__nc|ENSG00000101400|Q13424-2|SNTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4403458994001	1	821.440346	820.433069	2.323	0.0019082	-11.486	-0.0094354	-9.1634	-0.0075272	821.4305219367913	26.336	0.1448	26.336	26.239	26.384	0	477	58	1.3357477	0.03403437	1.3357477	272.0049	0	6.9305725						147	7	2	NaN	NaN	NaN	0.80071	1	5024	5024		9.1232	0	1	12551	+		24419	8852	14092	14494	19412	19412					0.01567022086101133
SLIADGVF	8	Unmodified						0	0	0			REV__nc|ENSG00000101400|Q13424-2|SNTA1	REV__nc|ENSG00000101400|Q13424-2|SNTA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.440346	820.433069	2.323	0.0019082	-11.486	-0.0094354	-9.1634	-0.0075272	821.4305219367913	26.336	0.1448	26.336	26.239	26.384	0	477	58	1.3357477	0.03403437	1.3357477	272.0049		6.9305725	0.0057035	-0.00031833	-0.00013602	NaN	9.1232	147	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12551	+		24420	8852	14092	14494							0.01567022086101133
SLIEPISMI	9	Unmodified	_SLIEPISMI_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5539954487	1	1002.554	1001.54672	1.2682	0.0012714	-4.7243	-0.0047364	-3.4562	-0.003465	1002.5490864839334	29.786	0.096491	29.779	29.755	29.852	-0.0070648	213	82	1.4926696	0.04793954	1.4911501	303.0529	0	9.733032						155	5	2	NaN	NaN	NaN	0.20577	1	8486	8486		24.961	4.4056	1	21037			24421	1619	14093	14495	19413	19413					0.04600749136818649
SLIRVFSALL	10	Unmodified	_SLIRVFSALL_					0	0	0		ENST00000567278.1_1_16:84600453-84600705:-|nuORF	ENST00000567278.1_1_16:84600453-84600705:-|nuORF	ENST00000567278.1_1_16:84600453-84600705:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.5692531586001	3	373.569253	1117.68593	1.717	0.00064141	5.1354	0.0019184	6.8524	0.0025598	373.5709887204265	19.204	0.047945	19.204	19.18	19.228	0	1395	31	0.7784366	0.018516839	0.7784366	473.45203	0	11.262085						44	3	2	NaN	NaN	NaN	0.77513	1	13595	13595		0.63172	0.24663	1	3393.8			24422	7631	14094	14496	19414	19414					0.13179454816531688
SLISPNVI	8	Unmodified	_SLISPNVI_					0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.4981951293001	1	842.498195	841.490919	1.3766	0.0011598	-0.98429	-0.00082927	0.39235	0.00033055	842.4977545786877	31.258	0.048271	31.253	31.229	31.277	-0.0050716	423	34	1.3679651	0.019670606	1.3664457	278.45062	0	4.0039673						48	3	2	NaN	NaN	NaN	0.84756	1	5155	5155		1.072	0	1	3379.6	+		24423	13518	14095	14497	19415	19415					0.06383284011531032
SLISPNVI	8	Unmodified						0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	842.498195	841.490919	1.1653	0.00098173	-1.1867	-0.0009998	-0.021456	-1.8076E-05	842.496696510706	31.259	0.024109	31.259	31.235	31.259	0	426	34	1.3661768	0.019670606	1.3661768	278.0866		4.0039673	0.0030465	-9.3298E-05	-0.0001344	NaN	1.072	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2109.2	+		24424	13518	14095	14497							0.06383284011531032
SLISPNVI	8	Unmodified						0	0	0			REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	REV__tr|U7SUG6|U7SUG6_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01415PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	842.498195	841.490919	1.3766	0.0011598	-0.98429	-0.00082927	0.39235	0.00033055	842.4977545786877	31.258	0.048271	31.253	31.229	31.277	-0.0050716	423	34	1.3679651	0.019670606	1.3664457	278.45062		4.0039673	-0.0030465	7.724E-05	0.0001344	NaN	1.072	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3379.6	+		24425	13518	14095	14497							0.06383284011531032
SLKCLCNIVF	10	Unmodified	_SLKCLCNIVF_					0	0	0		RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3012126117501	2	570.301213	1138.58787	0.53982	0.00030786	-1.1428	-0.00065173	-0.60296	-0.00034387	570.3019271827333	32.079	0.14479	32.075	32.027	32.172	-0.0037613	1188	73	0.90571284	0.044124186	0.9041934	367.1636	0	17.88733						336	7	4	NaN	NaN	NaN	0.27719	1	13934	13934		28.896	5.5612	1	47790			24426	1836	14096	14498	19416	19416					0.02412186904666669
SLKRGGAH	8	Unmodified	_SLKRGGAH_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.2381185765	2	413.238119	824.461684	1.2975	0.00053617	-0.20568	-8.4995E-05	1.0918	0.00045118	413.2382024339387	26.77	0.072889	26.77	26.722	26.795	0	1398	70	0.77658504	0.042586386	0.77658504	316.24786	0	17.342407						97	4	2	NaN	NaN	NaN	0.84692	1	5088	5088		1.4396	0.19772	1	9391.1			24427	344	14097	14499	19417	19417					0.04243184505901354
SLKSVSSKK	9	Unmodified	_SLKSVSSKK_					0	0	0			REV__nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	REV__nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.29529910440004	2	482.295299	962.576045	2.1793	0.0010511	1.7294	0.00083406	3.9087	0.0018851	482.2962368389837	22.38	0.072147	22.366	22.342	22.414	-0.013733	1314	34	0.8283535	0.020305753	0.8268341	336.53683	0	8.249634						45	4	2	NaN	NaN	NaN	0.54912	1	7258	7258		7.5876	0	1	4937.9	+		24428	9422	14098	14500	19418	19418					0.09326029477335851
SLKSVSSKK	9	Unmodified						0	0	0			REV__nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	REV__nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.295299	962.576045	2.1793	0.0010511	1.7294	0.00083406	3.9087	0.0018851	482.2962368389837	22.38	0.072147	22.366	22.342	22.414	-0.013733	1314	34	0.8283535	0.020305753	0.8268341	336.53683		8.249634	0.0049242	0.00015504	-0.00075972	NaN	7.5876	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4937.9	+		24429	9422	14098	14500							0.09326029477335851
SLKVIFFPSL	10	Unmodified	_SLKVIFFPSL_					0	0	0			REV__ENST00000491040.5_1_20:33934876-33981976:-|nuORF	REV__ENST00000491040.5_1_20:33934876-33981976:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.8471674994001	2	575.847167	1149.67978	1.0357	0.00059641	-8.0954	-0.0046617	-7.0597	-0.0040653	575.8422057596175	31.089	0.12069	31.084	31.012	31.133	-0.0050716	1146	67	0.93142134	0.040359855	0.9299019	377.54193	0	16.359467						237	6	4	NaN	NaN	NaN	0.77594	1	14300	14300		1.5054	0.26356	1	38907	+		24430	12461	14099	14501	19419	19419					0.11092936585009738
SLLIVAYS	8	Unmodified	_SLLIVAYS_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.25511131139996	2	433.255111	864.49567	0.89326	0.00038701	-1.237	-0.00053592	-0.34371	-0.00014891	433.2552575314969	37.072	0.16848	37.072	36.928	37.097	0	1407	40	0.77102906	0.024080992	0.77102906	313.74744	0	9.799042						187	8	3	NaN	NaN	NaN	0.8439	1	5594	5594		3.1533	0	1	21869	+		24431	10853	14100	14502	19420	19420					0.058001681542691585
SLLIVAYS	8	Unmodified						0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	433.255111	864.49567	0.89326	0.00038701	-1.237	-0.00053592	-0.34371	-0.00014891	433.2552575314969	37.072	0.16848	37.072	36.928	37.097	0	1407	40	0.77102906	0.024080992	0.77102906	313.74744		9.799042	-0.096285	0.00039505	-0.00016637	NaN	3.1533	187	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21869	+		24432	10853	14100	14502							0.058001681542691585
SLLQKTTWPRT	11	Unmodified	_SLLQKTTWPRT_					0	0	0			REV__ENST00000480271.1_1_11:7805306-7805588:+|nuORF	REV__ENST00000480271.1_1_11:7805306-7805588:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.25410474726664	3	444.254105	1329.74048	1.6543	0.00073493	0.7486	0.00033257	2.4029	0.0010675	444.2549940391183	19.972	0.048082	19.972	19.948	19.997	0	1374	28	0.791392	0.016649783	0.791392	480.39694	0	10.106873						30	3	2	NaN	NaN	NaN	0.77378	1	19253	19253		0.38034	0	1	1889.1	+		24433	12376	14101	14503	19421	19421					0.08880421897265478
SLLSMPLI	8	Unmodified	_SLLSMPLI_					0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	873.5114023525001	1	873.511402	872.504126	0.85932	0.00075062	-6.166	-0.005386	-5.3066	-0.0046354	873.5054335756558	35.673	0.072327	35.674	35.65	35.722	0.00053024	357	46	1.407258	0.026760697	1.4057386	286.28506	0	5.4440613						71	4	2	NaN	NaN	NaN	0.19946	1	5567	5567		50.033	2.9924	1	5337	+		24434	10177	14102	14504	19422	19422					0.06277398799261391
SLLTQISGKEK	11	Unmodified	_SLLTQISGKEK_					0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3508026106001	2	602.350803	1202.68705	1.1328	0.00068234	-0.74336	-0.00044777	0.38943	0.00023457	602.3503959966511	14.477	0.071959	14.477	14.453	14.525	0	1140	37	0.93509084	0.022014499	0.93509084	378.83124	0	8.918671						117	4	4	NaN	NaN	NaN	0.40559	1	16559	16559		21.85	0.079341	1	14563	+		24435	9273	14103	14505	19423	19423					0.09381624394768551
SLLTQISGKEK	11	Unmodified	_SLLTQISGKEK_					0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3508026106001	2	602.350803	1202.68705	0.86967	0.00052385	-1.5881	-0.00095658	-0.71841	-0.00043273	602.3499262615345	14.476	0.095874	14.465	14.441	14.537	-0.011218	1140	40	0.93509084	0.023850322	0.9335714	378.83124	0	9.662415						112	5	3	NaN	NaN	NaN	0.054678	1	15912	15912		48.65	1.1687	1	14278	+		24436	9273	14103	14505	19424	19424					0.09381624394768551
SLLTQISGKEK	11	Unmodified						0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.350803	1202.68705	1.1328	0.00068234	-0.74336	-0.00044777	0.38943	0.00023457	602.3503959966511	14.477	0.071959	14.477	14.453	14.525	0	1140	37	0.93509084	0.022014499	0.93509084	378.83124		8.918671	0.0061473	0.00041498	0.00075972	NaN	48.65	117	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14563	+		24437	9273	14103	14505							0.09381624394768551
SLLTQISGKEK	11	Unmodified						0	0	0			REV__ENSG00000118690|ENST00000392644|ARMC2	REV__ENSG00000118690|ENST00000392644|ARMC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.350803	1202.68705	0.86967	0.00052385	-1.5881	-0.00095658	-0.71841	-0.00043273	602.3499262615345	14.476	0.095874	14.465	14.441	14.537	-0.011218	1140	40	0.93509084	0.023850322	0.9335714	378.83124		9.662415	-0.0061473	-0.00060265	-0.00075972	NaN	48.65	112	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14278	+		24438	9273	14103	14505							0.09381624394768551
SLMDVPSSF	9	Unmodified	_SLMDVPSSF_					0	0	0			REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	REV__NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4550096856001	1	982.45501	981.447733	1.9408	0.0019068	-4.3775	-0.0043007	-2.4367	-0.0023939	982.4508895546362	27.881	0.096518	27.881	27.857	27.953	0	360	49	1.405474	0.028546333	1.405474	285.4291	0	5.7973022						96	5	2	NaN	NaN	NaN	0.23112	1	7924	7924		23.334	4.2161	1	7201.8	+		24439	10882	14104	14506	19425	19425					-0.04373273828070978
SLMLEWTPP	9	Unmodified	_SLMLEWTPP_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5335943576	1	1073.53359	1072.52632	1.0647	0.001143	4.7164	0.0050632	5.7811	0.0062062	1073.5382046339757	31.307	0.048285	31.302	31.277	31.326	-0.0050716	81	76	1.5705823	0.044177175	1.5690628	318.58456	0	8.96109						102	3	2	NaN	NaN	NaN	0.55027	1	11360	11360		7.5404	1.2902	1	11255			24440	2817	14105	14507	19426	19426					-0.007044215229825568
SLMWGTGQ	8	Unmodified	_SLMWGTGQ_					0	0	0		ENST00000492581.5_1_22:21062337-21064665:-|nuORF;ENST00000466772.5_1_22:21063687-21064617:-|nuORF;ENST00000486209.5_1_22:21829762-21829906:-|nuORF	ENST00000492581.5_1_22:21062337-21064665:-|nuORF	ENST00000492581.5_1_22:21062337-21064665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4029145356001	1	879.402915	878.395638	2.1027	0.0018491	-11.423	-0.010046	-9.3206	-0.0081966	879.3922368773426	26.191	0.072386	26.191	26.167	26.239	0	396	85	1.3840506	0.050062537	1.3840506	281.53458	0	10.18338						124	4	2	NaN	NaN	NaN	0.82797	1	5775	5775		5.4659	0.55612	1	10005			24441	7115	14106	14508	19427	19427					-0.04842392451166688
SLPDLTPTF	9	Unmodified	_SLPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5142391239999	1	990.514239	989.506963	1.9655	0.0019469	-1.8945	-0.0018765	0.071037	7.0363E-05	990.5123553369642	29.522	0.14486	29.522	29.474	29.618	0	225	85	1.4855686	0.049717665	1.4855686	301.66098	0	10.095734						267	7	3	NaN	NaN	NaN	0.036546	1	8191	8191		52.624	23.026	1	43257			24442	5661	14107	14509	19428	19428					0.011789454577524339
SLPDLTPTF	9	Unmodified	_SLPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5142391239999	1	990.514239	989.506963	1.3852	0.0013721	-1.2062	-0.0011947	0.17903	0.00017733	990.5125332710727	29.521	0.12065	29.514	29.466	29.586	-0.0070648	219	76	1.4891195	0.04439318	1.4876001	302.38202	0	9.014496						288	6	3	NaN	NaN	NaN	0.021105	1	8023	8023		70.6	15.106	1	45708			24443	5661	14107	14509	19429	19429					0.011789454577524339
SLPDLTPTF	9	Unmodified						0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	990.514239	989.506963	2.2312	0.00221	-0.71617	-0.00070937	1.515	0.0015006	990.5147124147786	29.907	0.07239	29.9	29.876	29.948	-0.0070667	228	43	1.4837929	0.024858832	1.4822735	301.3004		5.047882	0.18907	0.0009458	-0.0016476	NaN	52.624	49	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2721.6			24444	5661	14107	14509							0.011789454577524339
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.76128911155	2	577.761289	1153.50803	1.9992	0.001155	0.87304	0.00050441	2.8722	0.0016594	577.7609443767379	26.577	0.28961	26.577	26.408	26.698	0	1182	103	0.9093879	0.062502444	0.9093879	368.59634	0	25.33371						544	13	2	NaN	NaN	NaN	0.38313	1	14909	14909		22.126	10.078	1	103350			24445	609	14108	14510	19430	19430					-0.06258840173336466
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5349745661001	1	988.534975	987.527698	1.4168	0.0014005	-0.083696	-8.2736E-05	1.3331	0.0013178	988.534913478558	31.042	0.19308	31.042	30.97	31.163	0	222	64	1.4873441	0.03728628	1.4873441	302.02985	0	7.571594						297	9	3	NaN	NaN	NaN	0.03623	1	8133	8133		52.758	0	1	41848			24446	4950	14109	14511	19431	19431					0.0334353583742768
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		ENST00000568515.1_1_15:66007788-66048788:-|nuORF;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	ENST00000568515.1_1_15:66007788-66048788:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5349745661001	1	988.534975	987.527698	1.4647	0.0014479	0.64092	0.00063357	2.1056	0.0020814	988.5354364251391	31.041	0.24136	31.036	30.94	31.181	-0.0050716	222	61	1.4873441	0.035505056	1.4858247	302.02985	0	7.2099						271	11	2	NaN	NaN	NaN	0.02781	1	7970	7970		61.977	0	1	44004			24447	4950	14109	14511	19432	19432					0.0334353583742768
SLPHAGGG	8	Unmodified	_SLPHAGGG_					0	0	0			REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	REV__ENST00000423059.8_2_7:11676563-11871669:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3471142162002	1	695.347114	694.339838	-0.70734	-0.00049185	1.1883	0.0008263	0.48098	0.00033445	695.3478742576277	53.36	0.21583	53.36	53.264	53.48	-0.00053787	717	112	1.1918083	0.06681061	1.1902889	243.41838	0	13.645599						342	10	2	NaN	NaN	NaN	0.84692	1	3055	3055		1.4396	0	1	38297	+		24448	12117	14110	14512	19433	19433					-0.019558575764563102
SLPKFYLLF	9	Unmodified	_SLPKFYLLF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3286106055	2	564.328611	1126.64267	1.142	0.00064444	-2.3686	-0.0013367	-1.2267	-0.00069225	564.3270111601352	32.899	0.19301	32.897	32.825	33.018	-0.0024757	1188	67	0.90571284	0.04042965	0.9041934	367.2102	0	16.391724						379	9	4	NaN	NaN	NaN	0.31471	1	13533	13533		17.97	6.2308	1	90172			24449	5655	14111	14513	19434	19434					0.08441265039209611
SLPLLPDM	8	Unmodified	_SLPLLPDM_					0	0	0			REV__nc|ENSG00000079435|Q05469-2|LIPE	REV__nc|ENSG00000079435|Q05469-2|LIPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.4750168462001	1	885.475017	884.46774	1.3425	0.0011888	-1.043	-0.00092358	0.29947	0.00026518	885.4742233349526	30.872	0.14484	30.866	30.818	30.963	-0.0057545	381	70	1.3929803	0.04107678	1.3914609	283.32098	0	8.354706						162	7	2	NaN	NaN	NaN	0.45125	1	5745	5745		33.698	0	1	16054	+		24450	8643	14112	14514	19435	19435					0.020885219025444712
SLPLLPDM	8	Unmodified						0	0	0			REV__nc|ENSG00000079435|Q05469-2|LIPE	REV__nc|ENSG00000079435|Q05469-2|LIPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	885.475017	884.46774	1.2504	0.0011072	-3.2356	-0.0028651	-1.9852	-0.0017578	885.4715164951272	30.873	0.096476	30.873	30.849	30.946	0	384	67	1.3911947	0.03926778	1.3911947	282.95782		7.9867554	0.0034287	-0.001404	-0.00013306	NaN	33.698	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7749.3	+		24451	8643	14112	14514							0.020885219025444712
SLPLLPDM	8	Unmodified						0	0	0			REV__nc|ENSG00000079435|Q05469-2|LIPE	REV__nc|ENSG00000079435|Q05469-2|LIPE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	885.475017	884.46774	1.3425	0.0011888	-1.043	-0.00092358	0.29947	0.00026518	885.4742233349526	30.872	0.14484	30.866	30.818	30.963	-0.0057545	381	70	1.3929803	0.04107678	1.3914609	283.32098		8.354706	-0.0034287	0.00053751	0.00013306	NaN	33.698	162	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16054	+		24452	8643	14112	14514							0.020885219025444712
SLPPTMPL	8	Unmodified	_SLPPTMPL_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.23586431325003	2	428.235864	854.457176	1.5072	0.00064545	-7.4142	-0.003175	-5.9069	-0.0025296	428.23268855484395	24.261	0.096498	24.261	24.237	24.333	0	1407	160	0.77102906	0.098070204	0.77102906	313.80505	0	39.914093						529	5	4	NaN	NaN	NaN	0.27293	1	5460	5460		44.247	1.9293	1	342350			24453	5071	14113	14515	19436	19436					0.02412539248120993
SLPSPGGGA	9	Unmodified	_SLPSPGGGA_					0	0	0		ENST00000544928.1_22:39128030-39128449:+|nuORF	ENST00000544928.1_22:39128030-39128449:+|nuORF	ENST00000544928.1_22:39128030-39128449:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3729946157001	1	742.372995	741.365718	1.9033	0.0014129	-1.9347	-0.0014362	-0.031397	-2.3309E-05	742.3698395022737	23.706	0.072254	23.693	23.645	23.717	-0.013048	600	73	1.2621325	0.04317236	1.2606131	257.4652	0	8.806839						125	4	2	NaN	NaN	NaN	0.45297	1	3857	3857		11.548	1.8025	1	17176			24454	7517	14114	14516	19437	19437					-0.015310081248458118
SLPSPGGGA	9	Unmodified						0	0	0		ENST00000544928.1_22:39128030-39128449:+|nuORF	ENST00000544928.1_22:39128030-39128449:+|nuORF	ENST00000544928.1_22:39128030-39128449:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	742.372995	741.365718	1.6242	0.0012058	-5.6936	-0.0042268	-4.0694	-0.003021	742.3674671924565	23.682	0.072285	23.682	23.658	23.73	0	600	82	1.2621325	0.048581958	1.2621325	257.46524		9.910339	-0.0053857	-0.0014852	0.00075972	NaN	11.548	124	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18494			24455	7517	14114	14516							-0.015310081248458118
SLPSSHPI	8	Unmodified	_SLPSSHPI_					0	0	0		SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|26|2|sense	SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|26|2|sense	SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|26|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4464939098001	1	837.446494	836.439217	1.2482	0.0010453	1.6852	0.0014112	2.9334	0.0024565	837.4479201288499	30.631	0.072412	30.625	30.601	30.673	-0.0057545	438	46	1.359022	0.026832104	1.3575026	276.65707	0	5.462219						85	4	2	NaN	NaN	NaN	0.77489	1	5094	5094		12.588	0	1	5106.9			24456	13710	14115	14517	19438	19438					0.014455403176157233
SLQELSTEQ	9	Unmodified	_SLQELSTEQ_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7536610446999	2	517.753661	1033.49277	1.5305	0.00079244	-4.4375	-0.0022975	-2.9069	-0.0015051	517.7507734113697	21.055	0.16846	21.055	20.959	21.127	0	1266	70	0.85786515	0.042411506	0.85786515	348.18964	0	17.213928						193	8	2	NaN	NaN	NaN	0.54912	1	9912	9912		7.5876	1.3374	1	20114			24457	1682	14116	14518	19439	19439					-0.02263751761211097
SLQGGGGG	8	Unmodified	_SLQGGGGG_					0	0	0		ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	316.65355306960004	2	316.653553	631.292553	1.2512	0.00039619	4.6538	0.0014736	5.905	0.0018698	316.6556157252439	41.568	0.21644	41.577	41.529	41.745	0.0082588	1536	127	0.69119483	0.07810056	0.6896754	282.8783	0	31.96341						476	10	2	NaN	NaN	NaN	0.84887	1	1428	1428		0.32989	0	1	89444			24458	5565	14117	14519	19440	19440					-0.03784136847468744
SLQIYYFAWYM	11	Unmodified	_SLQIYYFAWYM_					0	0	0			REV__ENST00000379391.7_2_12:57452875-57452944:-|nuORF	REV__ENST00000379391.7_2_12:57452875-57452944:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.5688129489333	3	495.568813	1483.68461	2.7066	0.0013413	4.2686	0.0021154	6.9751	0.0034567	495.57189660285036	18.242	0.047947	18.228	18.18	18.228	-0.01395	1374	34	0.791392	0.020349741	0.7898726	479.88464	0	12.339691						36	3	2	NaN	NaN	NaN	0.77797	1	19523	19523		0.1369	0.018989	1	2433.9	+		24459	11957	14118	14520	19441	19441					-0.037885473345568244
SLQLPHLPQ	9	Unmodified	_SLQLPHLPQ_					0	0	0			REV__ENST00000380420.9_1_X:15509391-15511328:-|nuORF	REV__ENST00000380420.9_1_X:15509391-15511328:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7954662799001	2	516.795466	1031.57638	1.8292	0.00094535	3.4606	0.0017884	5.2899	0.0027338	516.7974788199857	23.706	0.096346	23.693	23.645	23.741	-0.013048	1278	43	0.85049206	0.02580595	0.8489726	345.2054	0	10.474335						83	5	2	NaN	NaN	NaN	0.58159	1	9652	9652		6.2502	0.78436	1	6941.2	+		24460	11966	14119	14521	19442	19442					0.06185449197187154
SLRGPGGG	8	Unmodified	_SLRGPGGG_					0	0	0			REV__ENST00000370520.3_1_20:61273322-61274596:-|nuORF	REV__ENST00000370520.3_1_20:61273322-61274596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.3736633177002	1	700.373663	699.366387	-0.74668	-0.00052295	9.5442	0.0066845	8.7975	0.0061615	700.3803658366704	56.395	0.1438	56.394	56.346	56.49	-0.00056458	591	61	1.26753	0.03598082	1.2660105	258.84796	0	7.347809						129	7	2	NaN	NaN	NaN	0.84727	1	3147	3147		1.2418	0	1	11431	+		24461	11885	14120	14522	19443	19443					0.004678313148701818
SLRLKEYHR	9	Unmodified	_SLRLKEYHR_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF;ENST00000513426.1_1_5:53156036-53156228:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.2315230092	3	401.231523	1200.67274	1.3232	0.00053089	-8.6678	-0.0034778	-7.3446	-0.0029469	401.227962422603	21.754	0.096302	21.754	21.73	21.826	0	1461	40	0.7376554	0.02412808	0.7376554	448.2713	0	14.662567						104	5	3	NaN	NaN	NaN	0.56022	1	16507	16507		7.1304	0.14601	1	7877.1			24462	2661	14121	14523	19444	19444					0.08043016757119403
SLRLVMSY	8	Unmodified	_SLRLVMSY_					0	0	0			REV__nc|ENSG00000120029|Q5T2E6-2|ARMH3	REV__nc|ENSG00000120029|Q5T2E6-2|ARMH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.76532024445	2	484.76532	967.516088	1.6506	0.00080017	-7.7755	-0.0037693	-6.1248	-0.0029691	484.7613683272173	22.308	0.072239	22.294	22.27	22.342	-0.013731	1323	58	0.8228144	0.035084903	0.82129496	334.26245	0	14.252991						84	4	2	NaN	NaN	NaN	0.78264	1	7396	7396		11.548	0	1	7811	+		24463	9305	14122	14524	19445	19445					0.031030155424332406
SLSDLAFAGL	10	Unmodified	_SLSDLAFAGL_					0	0	0			REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.5251381613001	1	993.525138	992.517862	1.3652	0.0013563	-4.3837	-0.0043553	-3.0185	-0.002999	993.5248663672675	27.566	0.16892	27.557	27.46	27.629	-0.009552	183	94	1.510409	0.0549891	1.5088896	306.69232	0	11.16568						349	8	3	NaN	NaN	NaN	0.25724	1	8152	8152		30.61	7.2757	1	48813	+		24464	12665	14123	14525	19446	19446					0.02130347832053303
SLSHPRTGR	9	Unmodified	_SLSHPRTGR_					0	0	0			REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF	REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	337.52118495153337	3	337.521185	1009.54173	1.4676	0.00049534	-3.9268	-0.0013254	-2.4592	-0.00083004	337.5197261712685	20.887	0.096344	20.887	20.862	20.959	0	1548	64	0.6837494	0.03907782	0.6837494	416.4037	0	23.7984						112	5	2	NaN	NaN	NaN	0.6532	1	8965	8965		1.6985	0.32885	1	10450	+		24465	10212	14124	14526	19447	19447					0.037336261090899825
SLSSKGSG	8	Unmodified	_SLSSKGSG_					0	0	0			REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3679092378002	1	722.367909	721.360633	1.45	0.0010475	3.0707	0.0022182	4.5207	0.0032656	722.3702249683622	28.291	0.12063	28.291	28.267	28.388	0	600	70	1.2621325	0.04139793	1.2621325	257.5948	0	8.449097						124	6	2	NaN	NaN	NaN	0.7718	1	3618	3618		13.003	0	1	11673	+		24466	8116	14125	14527	19448	19448					-0.01119311987463334
SLSSKGSG	8	Unmodified	_SLSSKGSG_					0	0	0			REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3679092378002	1	722.367909	721.360633	1.0734	0.00077541	5.2414	0.0037862	6.3148	0.0045616	722.3716976274405	28.29	0.14477	28.281	28.257	28.402	-0.0089779	597	61	1.2639319	0.0359962	1.2624124	257.96204	0	7.346634						131	7	2	NaN	NaN	NaN	0.80191	1	3540	3540		8.962	0	1	12433	+		24467	8116	14125	14527	19449	19449					-0.01119311987463334
SLSSKGSG	8	Unmodified						0	0	0			REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.367909	721.360633	1.45	0.0010475	3.0707	0.0022182	4.5207	0.0032656	722.3702249683622	28.291	0.12063	28.291	28.267	28.388	0	600	70	1.2621325	0.04139793	1.2621325	257.5948		8.449097	0.0048441	-0.00058435	-0.00013995	NaN	13.003	124	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11673	+		24468	8116	14125	14527							-0.01119311987463334
SLSSKGSG	8	Unmodified						0	0	0			REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	REV__ABCC9|p.R1347C|1|0.16|ENSG00000069431|chr12:21814707-21814707|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	722.367909	721.360633	1.0734	0.00077541	5.2414	0.0037862	6.3148	0.0045616	722.3716976274405	28.29	0.14477	28.281	28.257	28.402	-0.0089779	597	61	1.2639319	0.0359962	1.2624124	257.96204		7.346634	-0.0048441	0.0009837	0.00013995	NaN	13.003	131	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12433	+		24469	8116	14125	14527							-0.01119311987463334
SLSSSGVL	8	Unmodified	_SLSSSGVL_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4039603931002	1	749.40396	748.396684	1.513	0.0011339	5.3865	0.0040366	6.8995	0.0051705	749.4075987799739	30.391	0.16893	30.391	30.366	30.535	0	528	139	1.3052634	0.0826236	1.3052634	266.21814	0	16.8517						316	8	3	NaN	NaN	NaN	0.80071	1	4031	4031		9.1232	0	1	46075			24470	1266	14126	14528	19450	19450					0.012421451893942503
SLSSSGVL	8	Unmodified						0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	749.40396	748.396684	1.2587	0.0009433	3.9991	0.002997	5.2579	0.0039403	749.4067930248495	30.39	0.19304	30.383	30.359	30.552	-0.0064106	528	142	1.3052634	0.08440626	1.303744	266.21814		17.215271	-0.0037118	-0.00059068	-0.00075972	NaN	9.1232	433	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60911			24471	1266	14126	14528							0.012421451893942503
SLSTFQQMW	9	Unmodified	_SLSTFQQMW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.26314169625	2	564.263142	1126.51173	1.7321	0.00097737	-1.456	-0.00082155	0.27614	0.00015582	564.262584679171	29.28	0.1689	29.28	29.232	29.401	0	1266	49	0.85786515	0.02948296	0.85786515	347.81143	0	11.953522						254	8	4	NaN	NaN	NaN	0.030669	1	13950	13950		58.235	8.4026	1	57047			24472	841;3442	14127	14529	19451	19451					-0.04646493671134522
SLSTFQQMW	9	Unmodified	_SLSTFQQMW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.5190069259	1	1127.51901	1126.51173	1.8892	0.0021302	0.91075	0.0010269	2.8	0.003157	1127.5203953935697	29.28	0.14476	29.28	29.256	29.401	0	90	64	1.5652816	0.037112713	1.5652816	317.316	0	7.5235596						142	7	2	NaN	NaN	NaN	0.048656	1	13951	13951		47.482	27.033	1	13020			24473	841;3442	14127	14529	19452	19452					-0.04646493671134522
SLSTFQQMW	9	Unmodified	_SLSTFQQMW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.26314169625	2	564.263142	1126.51173	1.1206	0.00063229	-1.4357	-0.00081011	-0.31513	-0.00017782	564.2627313166183	29.28	0.16891	29.272	29.224	29.393	-0.0077229	1263	73	0.85970795	0.04420048	0.8581885	348.55856	0	17.920563						319	8	4	NaN	NaN	NaN	0.12328	1	13508	13508		32.453	10.326	1	59264			24474	841;3442	14127	14529	19453	19453					-0.04646493671134522
SLSTFQQMW	9	Unmodified	_SLSTFQQMW_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1127.5190069259	1	1127.51901	1126.51173	1.1121	0.0012539	-0.90629	-0.0010219	0.20583	0.00023208	1127.5188323419209	29.28	0.096514	29.272	29.248	29.344	-0.0077229	90	55	1.5652816	0.03180921	1.5637622	317.316	0	6.4484253						135	5	3	NaN	NaN	NaN	0.030669	1	13509	13509		58.235	13.597	1	8770.2			24475	841;3442	14127	14529	19454	19454					-0.04646493671134522
SLSTFQQMW	9	Oxidation (M)	_SLSTFQQM(Oxidation (M))W_		SLSTFQQM(1)W		SLSTFQQM(110)W	0	0	1		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1143.5139215479999	1	1143.51392	1142.50665	2.8219	0.0032269	-2.2379	-0.0025591	0.58398	0.00066779	1143.5128799167985	25.346	0.14477	25.346	25.322	25.467	0	78	55	1.5723488	0.03179586	1.5723488	318.69464	0	6.44458						170	7	3	NaN	NaN	NaN	0.0035249	1	14536	14536		106.42	68.294	1	13720			24476	841;3442	14127	14530	19455	19455		86			-0.05890797533743353
SLSTFQQMW	9	Oxidation (M)	_SLSTFQQM(Oxidation (M))W_		SLSTFQQM(1)W		SLSTFQQM(110)W	0	0	1		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;nc|ENSG00000204434|Q9BYX7|POTEKP;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1143.5139215479999	1	1143.51392	1142.50665	2.4333	0.0027825	-1.3562	-0.0015509	1.0771	0.0012317	1143.5129254727278	25.346	0.096497	25.334	25.31	25.407	-0.012011	78	52	1.5723488	0.030024648	1.5708294	318.69464	0	6.0855713						133	5	3	NaN	NaN	NaN	0.0021374	1	14057	14057		110.61	63.124	1	10752			24477	841;3442	14127	14530	19456	19456		86			-0.05890797533743353
SLSTVFVVL	9	Unmodified	_SLSTVFVVL_					0	0	0		CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5713600724001	1	964.57136	963.564084	1.2811	0.0012357	-3.1886	-0.0030756	-1.9075	-0.0018399	964.5678161077799	34.13	0.048252	34.129	34.105	34.153	-0.0012474	222	55	1.4873441	0.03196132	1.4858247	302.13324	0	6.4924927						83	3	3	NaN	NaN	NaN	0.17818	1	7299	7299		26.732	6.1761	1	6405.4			24478	98	14128	14531	19457	19457					0.08084412734137914
SLSTVFVVL	9	Unmodified						0	0	0		CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant;ENSG00000134255|ENST00000357172|CEPT1	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	CEPT1|p.I375Sfs*8|1|0.25|ENSG00000134255|chr1:111183580-111183581|TT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	964.57136	963.564084	1.1416	0.0011011	0.31571	0.00030452	1.4573	0.0014056	964.5721363193694	34.131	0.072334	34.131	34.107	34.179	0	225	43	1.4855686	0.02485621	1.4855686	301.77252		5.0491943	0.001238	0.0014935	-0.00012805	NaN	26.732	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6037			24479	98	14128	14531							0.08084412734137914
SLSVSVCM	8	Unmodified	_SLSVSVCM_					0	0	0			REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.195881873	2	413.195882	824.377211	1.1491	0.00047482	-8.144	-0.0033651	-6.9949	-0.0028903	413.19246490157406	32.78	0.048275	32.78	32.732	32.78	0	1428	31	0.7580582	0.018536866	0.7580582	308.70374	0	7.548767						51	3	2	NaN	NaN	NaN	0.83211	1	5078	5078		4.9097	2.1245	1	5035.6	+		24480	10318	14129	14532	19458	19458					-0.0420027041737967
SLTFYSLI	8	Unmodified	_SLTFYSLI_					0	0	0		ENST00000455854.2_1_6:43493558-43493747:-|nuORF	ENST00000455854.2_1_6:43493558-43493747:-|nuORF	ENST00000455854.2_1_6:43493558-43493747:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.26039365455	2	472.260394	942.506234	0.71243	0.00033645	-3.8863	-0.0018354	-3.1739	-0.0014989	472.25875170409597	17.522	0.095997	17.508	17.484	17.58	-0.013567	1335	46	0.8154261	0.027713597	0.81390667	331.38412	0	11.262665						124	5	3	NaN	NaN	NaN	0.67593	1	6749	6749		20.555	0	1	14530			24481	7059	14130	14533	19459	19459					0.03268150808708015
SLTSVVLTL	9	Unmodified	_SLTSVVLTL_					0	0	0		nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;DHX40-VMP1|1|fusion;DHX40-VMP1|2|fusion	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5662746945001	1	932.566275	931.558998	0.66379	0.00061903	-1.4478	-0.0013501	-0.78397	-0.00073111	932.5653268526122	31.838	0.12066	31.833	31.809	31.93	-0.0044155	267	52	1.4606913	0.030225873	1.4591719	296.86273	0	6.1429443						123	6	2	NaN	NaN	NaN	0.062072	1	6503	6503		41.785	0	1	16995			24482	7922	14131	14534	19460	19460					0.09048108871525073
SLVAAPKV	8	Unmodified	_SLVAAPKV_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.4927158209	1	784.492716	783.485439	2.3022	0.0018061	-3.6334	-0.0028504	-1.3312	-0.0010443	784.4899674604565	29.98	0.14484	29.98	29.932	30.077	0	540	133	1.2980826	0.0790987	1.2980826	264.54016	0	16.119766						403	7	4	NaN	NaN	NaN	0.8439	1	4547	4547		3.1533	0	1	154450	+		24483	11035	14132	14535	19461	19461					0.08503605219698329
SLVAAPKV	8	Unmodified						0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	784.492716	783.485439	2.3022	0.0018061	-3.6334	-0.0028504	-1.3312	-0.0010443	784.4899674604565	29.98	0.14484	29.98	29.932	30.077	0	540	133	1.2980826	0.0790987	1.2980826	264.54016		16.119766	0.003666	-4.6484E-05	0.00075972	NaN	3.1533	403	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154450	+		24484	11035	14132	14535							0.08503605219698329
SLVCELQVWQG	11	Unmodified	_SLVCELQVWQG_					0	0	0		nc|ENSG00000159588|Q96LX7-2|CCDC17;nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.2130291877	3	421.213029	1260.61726	1.6508	0.00069533	5.8282	0.0024549	7.479	0.0031502	421.2150331460619	22.67	0.072361	22.67	22.645	22.718	0	1458	34	0.7395112	0.02041161	0.7395112	449.1565	0	12.3974						82	4	3	NaN	NaN	NaN	0.73894	1	18013	18013		4.9007	1	1	9437.8			24485	4032	14133	14536	19462	19462					-0.002625775455044277
SLVEEFSGG	9	Unmodified	_SLVEEFSGG_					0	0	0			REV__ENST00000571678.1_1_6:125583958-125584105:+|nuORF	REV__ENST00000571678.1_1_6:125583958-125584105:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4309034251002	1	924.430903	923.423627	1.514	0.0013995	0.80482	0.000744	2.3188	0.0021435	924.4322440635465	25.322	0.16884	25.31	25.262	25.431	-0.012011	405	52	1.3786905	0.030380487	1.377171	280.23328	0	6.175171						146	8	2	NaN	NaN	NaN	0.20577	1	6342	6342		24.961	0	1	13333	+		24486	9109	14134	14537	19463	19463					-0.04114790990081474
SLVEEFSGG	9	Unmodified						0	0	0			REV__ENST00000571678.1_1_6:125583958-125584105:+|nuORF	REV__ENST00000571678.1_1_6:125583958-125584105:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	924.430903	923.423627	1.514	0.0013995	0.80482	0.000744	2.3188	0.0021435	924.4322440635465	25.322	0.16884	25.31	25.262	25.431	-0.012011	405	52	1.3786905	0.030380487	1.377171	280.23328		6.175171	-0.0182	0.00098479	0.0010275	NaN	24.961	146	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13333	+		24487	9109	14134	14537							-0.04114790990081474
SLVGCTKK	8	Unmodified	_SLVGCTKK_					0	0	0			REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	835.4706001703	1	835.4706	834.463324	-0.58928	-0.00049233	-6.3482	-0.0053038	-6.9375	-0.0057961	835.464963058726	53.753	0.27411	53.753	53.623	53.897	-0.00059128	378	46	1.3947657	0.026780725	1.3932463	283.94437	0	5.4519653						236	11	3	NaN	NaN	NaN	0.84756	1	5070	5070		1.072	0	1	30828	+		24488	11604	14135	14538	19464	19464					0.03947057479626892
SLVGCTKK	8	Unmodified						0	0	0			REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	835.4706	834.463324	1.8534	0.0015485	-8.9442	-0.0074726	-7.0908	-0.0059242	835.463396889108	53.755	0.12959	53.755	53.626	53.755	0	381	46	1.3929803	0.026780725	1.3929803	283.5809		5.4519653	0.0011889	-0.00098073	-0.00013297	NaN	1.072	151	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26654	+		24489	11604	14135	14538							0.03947057479626892
SLVGCTKK	8	Unmodified						0	0	0			REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	REV__ENST00000280557.10_1_12:123255181-123255235:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	835.4706	834.463324	-0.58928	-0.00049233	-6.3482	-0.0053038	-6.9375	-0.0057961	835.464963058726	53.753	0.27411	53.753	53.623	53.897	-0.00059128	378	46	1.3947657	0.026780725	1.3932463	283.94437		5.4519653	-0.0011889	0.0011881	0.00013297	NaN	1.072	236	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30828	+		24490	11604	14135	14538							0.03947057479626892
SLVIALCVY	9	Unmodified	_SLVIALCVY_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5485161403001	1	980.548516	979.54124	1.273	0.0012482	7.5693	0.007422	8.8423	0.0086703	980.5570377207146	41.761	0.1203	41.77	41.746	41.866	0.0089951	867	79	1.1012185	0.047207832	1.099699	223.6457	0	9.587418						140	6	2	NaN	NaN	NaN	0.65818	1	7712	7712		2.7852	0	1	8346.7	+		24491	10287	14136	14539	19465	19465					0.05065070345017375
SLWTLPDVW	9	Unmodified	_SLWTLPDVW_					0	0	0			REV__ENSG00000212993|ENST00000696633|POU5F1B	REV__ENSG00000212993|ENST00000696633|POU5F1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.86232521269994	3	372.862325	1115.56515	1.9202	0.00071597	1.1353	0.00042332	3.0555	0.0011393	372.86312150464266	17.522	0.14399	17.508	17.46	17.604	-0.013567	1425	52	0.7599118	0.03151101	0.75839233	462.19574	0	19.16571						181	7	3	NaN	NaN	NaN	0.56671	1	13112	13112		3.9281	1.2239	1	13732	+		24492	11280	14137	14540	19466	19466					0.011986271030309581
SLWTLPDVW	9	Unmodified						0	0	0			REV__ENSG00000212993|ENST00000696633|POU5F1B	REV__ENSG00000212993|ENST00000696633|POU5F1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	372.862325	1115.56515	1.8255	0.00068068	0.37824	0.00014103	2.2038	0.00082171	372.8626003282263	17.429	0.095917	17.429	17.429	17.525	0	1428	46	0.7580582	0.027806818	0.7580582	461.06836		16.91278	-0.039546	-0.00037204	-0.00016708	NaN	3.9281	132	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11341	+		24493	11280	14137	14540							0.011986271030309581
SLWTLPDVW	9	Unmodified						0	0	0			REV__ENSG00000212993|ENST00000696633|POU5F1B	REV__ENSG00000212993|ENST00000696633|POU5F1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	372.862325	1115.56515	1.9202	0.00071597	1.1353	0.00042332	3.0555	0.0011393	372.86312150464266	17.522	0.14399	17.508	17.46	17.604	-0.013567	1425	52	0.7599118	0.03151101	0.75839233	462.19574		19.16571	0.039546	0.00047482	0.00016708	NaN	3.9281	181	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13732	+		24494	11280	14137	14540							0.011986271030309581
SLYDKYAFA	9	Unmodified	_SLYDKYAFA_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5251381613	1	1077.52514	1076.51786	1.7034	0.0018354	2.2603	0.0024356	3.9637	0.004271	1077.5273057883744	29.593	0.048271	29.586	29.562	29.61	-0.0070667	72	76	1.5758814	0.044172525	1.5743619	319.6444	0	8.959747						87	3	2	NaN	NaN	NaN	0.58159	1	11507	11507		6.2502	2.2817	1	6701.5	+		24495	9211	14138	14541	19467	19467					-0.017336521679453654
SLYDKYAFA	9	Unmodified						0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1077.52514	1076.51786	1.3892	0.0014969	-0.12561	-0.00013535	1.2636	0.0013615	1077.524609127926	29.594	0.12064	29.594	29.522	29.642	0	72	70	1.5758814	0.040642977	1.5758814	319.6444		8.243835	0.0039562	-0.0011371	0.00075972	NaN	6.2502	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6947.8	+		24496	9211	14138	14541							-0.017336521679453654
SLYDKYAFA	9	Unmodified						0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1077.52514	1076.51786	1.7034	0.0018354	2.2603	0.0024356	3.9637	0.004271	1077.5273057883744	29.593	0.048271	29.586	29.562	29.61	-0.0070667	72	76	1.5758814	0.044172525	1.5743619	319.6444		8.959747	-0.0039562	0.0014338	-0.00075972	NaN	6.2502	87	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6701.5	+		24497	9211	14138	14541							-0.017336521679453654
SLYDMARYE	9	Unmodified	_SLYDMARYE_					0	0	0		nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	nc|ENSG00000239306|Q96PK6-5|RBM14	nc|ENSG00000239306|Q96PK6-5|RBM14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.25805631835	2	574.258056	1146.50156	1.7477	0.0010037	-1.042	-0.00059839	0.70572	0.00040527	574.2576177574188	23.682	0.14459	23.682	23.658	23.803	0	1230	49	0.8799654	0.029451072	0.8799654	356.6965	0	11.93808						139	7	2	NaN	NaN	NaN	0.44082	1	14670	14670		12.049	0	1	28555			24498	8045	14139	14542	19468	19468					-0.06583101396381608
SLYDMARYE	9	Unmodified						0	0	0		nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	nc|ENSG00000239306|Q96PK6-5|RBM14	nc|ENSG00000239306|Q96PK6-5|RBM14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.258056	1146.50156	1.4811	0.00085053	-0.12589	-7.2296E-05	1.3552	0.00077824	574.2579898222634	23.706	0.1204	23.693	23.645	23.765	-0.013048	1227	43	0.88180584	0.02576691	0.8802864	357.4425		10.444702	0.0053857	0.00049322	0.00016048	NaN	12.049	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28128			24499	8045	14139	14542							-0.06583101396381608
SLYIVIIPL	9	Unmodified	_SLYIVIIPL_					0	0	0		tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	tr|U7T2F8|U7T2F8_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00551PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.6546957713	1	1030.6547	1029.64742	1.4904	0.0015361	0.82916	0.00085458	2.3196	0.0023907	1030.6562271736777	39.74	0.072369	39.746	39.722	39.794	0.0053368	78	67	1.5723488	0.03887379	1.5708294	319.1116	0	7.8895264						81	4	2	NaN	NaN	NaN	0.078597	1	9580	9580		38.918	0	1	5616.5			24500	13957	14140	14543	19469	19469					0.13378149181994559
SLYNSLSIAMQ	11	Unmodified	_SLYNSLSIAMQ_					0	0	0		ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000145736|ENST00000274400|GTF2H2	ENST00000523003.5_1_5:70351153-70358599:-|nuORF	ENST00000523003.5_1_5:70351153-70358599:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.8079133406501	2	613.807913	1225.60127	0.87873	0.00053937	1.4951	0.00091771	2.3738	0.0014571	613.8086978636953	26.915	0.21759	26.915	26.77	26.988	0	1167	88	0.91857195	0.05324477	0.91857195	372.06003	0	21.566376						332	10	2	NaN	NaN	NaN	0.6085	1	17125	17125		13.463	0.89334	1	70363			24501	3530	14141	14544	19470	19470					-0.002502837824067683
SLYVMFQL	8	Unmodified	_SLYVMFQL_					0	0	0			REV__ENST00000434457.6_2_9:19332052-19332091:+|nuORF	REV__ENST00000434457.6_2_9:19332052-19332091:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.76224623925003	2	500.762246	999.50994	1.8378	0.0009203	-9.218	-0.004616	-7.3802	-0.0036957	500.75705826064564	23.513	0.096504	23.513	23.441	23.538	0	1287	43	0.8449601	0.02582264	0.8449601	343.10498	0	10.485596						78	5	2	NaN	NaN	NaN	0.63138	1	8568	8568		23.334	1.4994	1	9693	+		24502	12166	14142	14545	19471	19471					0.010164973109226594
SLYVMFQL	8	Unmodified						0	0	0			REV__ENST00000434457.6_2_9:19332052-19332091:+|nuORF	REV__ENST00000434457.6_2_9:19332052-19332091:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.762246	999.50994	1.8378	0.0009203	-9.218	-0.004616	-7.3802	-0.0036957	500.75705826064564	23.513	0.096504	23.513	23.441	23.538	0	1287	43	0.8449601	0.02582264	0.8449601	343.10498		10.485596	-0.017394	-0.0010119	0.00075972	NaN	23.334	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9693	+		24503	12166	14142	14545							0.010164973109226594
SLYYVSQEQRR	11	Unmodified	_SLYYVSQEQRR_					0	0	0			REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	714.86513979385	2	714.86514	1427.71573	1.7864	0.0012771	-8.5794	-0.0061331	-6.793	-0.0048561	714.8589608137112	18.434	0.096077	18.42	18.396	18.492	-0.01395	1035	43	0.99917877	0.025589645	0.9976593	404.0705	0	10.34848						147	5	4	NaN	NaN	NaN	0.6011	1	19304	19304		13.949	2.2099	1	17276	+		24504	8191	14143	14546	19472	19472					0.018977420238798004
SLYYVSQEQRR	11	Unmodified						0	0	0			REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	714.86514	1427.71573	1.8833	0.0013463	-9.4202	-0.0067342	-7.537	-0.0053879	714.8586505533852	18.412	0.11989	18.412	18.388	18.508	0	1035	49	0.99917877	0.029245198	0.99917877	404.0705		11.826843	-0.0035962	-0.00053912	0.00075972	NaN	13.949	121	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16056	+		24505	8191	14143	14546							0.018977420238798004
SLYYVSQEQRR	11	Unmodified						0	0	0			REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	REV__CDH7|p.P561S|1|0.25|ENSG00000081138|chr18:65862734-65862734|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	714.86514	1427.71573	1.7864	0.0012771	-8.5794	-0.0061331	-6.793	-0.0048561	714.8589608137112	18.434	0.096077	18.42	18.396	18.492	-0.01395	1035	43	0.99917877	0.025589645	0.9976593	404.0705		10.34848	0.0035962	0.00066299	-0.00075972	NaN	13.949	147	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17276	+		24506	8191	14143	14546							0.018977420238798004
SMDPLPVFL	9	Unmodified	_SMDPLPVFL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5277806982002	1	1018.52778	1017.5205	1.845	0.0018791	0.027226	2.7731E-05	1.8722	0.0019069	1018.5276066172878	35.41	0.12061	35.41	35.385	35.506	0	147	175	1.5316714	0.1029104	1.5316714	310.905	0	20.88916						647	6	3	NaN	NaN	NaN	0.0047854	1	9275	9275		103.03	47.079	1	112830			24507	3424	14144	14547	19473	19473					0.012444799653621885
SMDPLPVFL	9	Unmodified	_SMDPLPVFL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5277806982002	1	1018.52778	1017.5205	1.3714	0.0013968	-0.20585	-0.00020967	1.1655	0.0011871	1018.5268215801646	35.408	0.14454	35.409	35.361	35.505	0.00053024	141	166	1.5352125	0.09757185	1.5336931	311.62378	0	19.805542						758	7	4	NaN	NaN	NaN	0.002833	1	9096	9096		108.51	64.207	1	119390			24508	3424	14144	14547	19474	19474					0.012444799653621885
SMDPLPVFL	9	Oxidation (M)	_SM(Oxidation (M))DPLPVFL_		SM(1)DPLPVFL		SM(55)DPLPVFL	0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5226953203	1	1034.5227	1033.51542	1.3298	0.0013757	0.028395	2.9375E-05	1.3582	0.001405	1034.5233779436867	33.021	0.16896	33.021	32.973	33.142	0	156	166	1.5263584	0.097530365	1.5263584	309.76242	0	19.79303						727	8	4	NaN	NaN	NaN	0.032764	1	9925	9925		55.494	30.533	1	120230			24509	3424	14144	14548	19475	19475		385			1.7610275335755432E-06
SMDPLPVFL	9	Oxidation (M)	_SM(Oxidation (M))DPLPVFL_		SM(1)DPLPVFL		SM(96)DPLPVFL	0	0	1		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5226953203	1	1034.5227	1033.51542	1.1428	0.0011822	-0.21067	-0.00021794	0.93209	0.00096427	1034.522751568158	33.02	0.19286	33.018	32.969	33.162	-0.0024796	153	157	1.5281296	0.09219587	1.5266101	310.12186	0	18.710419						704	9	4	NaN	NaN	NaN	0.0081087	1	9716	9716		96.245	57.328	1	114580			24510	3424	14144	14548	19476	19476		385			1.7610275335755432E-06
SMETALALE	9	Unmodified	_SMETALALE_					0	0	0		nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4655743719	1	964.465574	963.458298	1.5893	0.0015329	0.22431	0.00021634	1.8137	0.0017492	964.4659159926565	28.725	0.12066	28.725	28.701	28.822	0	237	61	1.4784646	0.035542846	1.4784646	300.32993	0	7.2200317						138	6	3	NaN	NaN	NaN	0.29681	1	7426	7426		19.118	0	1	40829			24511	4535	14145	14549	19477	19477					-0.02489291173651509
SMFISCPSLY	10	Unmodified	_SMFISCPSLY_					0	0	0		ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2617531002501	2	574.261753	1146.50895	1.35	0.00077525	-4.8684	-0.0027957	-3.5184	-0.0020205	574.2596477935106	24.623	0.096487	24.623	24.598	24.695	0	1227	61	0.88180584	0.036790013	0.88180584	357.4425	0	14.912933						113	5	3	NaN	NaN	NaN	0.69717	1	14672	14672		8.2448	2.5507	1	11181			24512	7446	14146	14550	19478	19478					-0.0584408512029313
SMFISCPSLY	10	Unmodified						0	0	0		ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.261753	1146.50895	1.121	0.00064377	-6.2158	-0.0035695	-5.0948	-0.0029258	574.2582692001189	24.623	0.072338	24.61	24.586	24.658	-0.012394	1224	67	0.883646	0.040473342	0.88212657	358.18845		16.406006	-0.0062524	-0.00071551	0.00016038	NaN	8.2448	125	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10621			24513	7446	14146	14550							-0.0584408512029313
SMGCSCDS	8	Unmodified	_SMGCSCDS_					0	0	0		ENST00000369063.7_1_6:107040122-107067091:-|nuORF	ENST00000369063.7_1_6:107040122-107067091:-|nuORF	ENST00000369063.7_1_6:107040122-107067091:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.11423158329995	2	395.114232	788.21391	0.94863	0.00037482	1.9446	0.00076836	2.8933	0.0011432	395.1152994936253	31.79	0.31377	31.79	31.742	32.056	0	1371	88	0.79324204	0.05362028	0.79324204	323.27386	0	21.852142						513	14	4	NaN	NaN	NaN	0.8439	1	4599	4599		3.1533	1.483	1	101990			24514	6638	14147	14551	19479	19479					-0.1886681653073765
SMLAVMDIL	9	Unmodified	_SMLAVMDIL_					0	0	0		ENSG00000255307|ENST00000530810|OR52B2	ENSG00000255307|ENST00000530810|OR52B2	ENSG00000255307|ENST00000530810|OR52B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5155014524001	1	992.515501	991.508225	1.2104	0.0012014	-2.6823	-0.0026622	-1.4718	-0.0014608	992.5133950961477	33.044	0.14463	33.042	32.993	33.138	-0.0024757	234	67	1.4802408	0.03908038	1.4787214	300.5708	0	7.935486						194	7	3	NaN	NaN	NaN	0.056143	1	8102	8102		44.302	5.3845	1	27710			24515	6122	14148	14552	19480	19480					0.012131202306704836
SMSFTTRSTF	10	Unmodified	_SMSFTTRSTF_					0	0	0		ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENST00000549078.5_1_12:53342924-53344195:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7713308691	2	582.771331	1163.52811	2.1034	0.0012258	-4.1591	-0.0024238	-2.0556	-0.001198	582.768584717641	17.978	0.19195	17.964	17.916	18.108	-0.013786	1158	49	0.92408	0.02937162	0.9225606	374.51337	0	11.903809						221	9	4	NaN	NaN	NaN	0.66626	1	14732	14732		10.36	0	1	41425			24516	7535	14149	14553	19481	19481					-0.04711412505048429
SMSPCPQRTPD	11	Unmodified	_SMSPCPQRTPD_					0	0	0		ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.76572256245	2	609.765723	1217.51689	1.2185	0.00074298	-8.2542	-0.0050331	-7.0357	-0.0042901	609.7615040230453	28.388	0.12067	28.388	28.388	28.508	0	1197	55	0.9001988	0.03308952	0.9001988	364.64514	0	13.4036255						110	6	2	NaN	NaN	NaN	0.67772	1	16918	16918		8.9191	0.62881	1	11382			24517	4248	14150	14554	19482	19482					-0.08316557870807628
SMTMFVCNTL	10	Unmodified	_SMTMFVCNTL_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__ENSG00000007314|ENST00000435607|SCN4A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7532379639001	2	573.753238	1145.49192	1.5658	0.00089836	-7.9875	-0.0045828	-6.4217	-0.0036845	573.7487846057973	16.515	0.21576	16.502	16.43	16.645	-0.012993	1230	52	0.8799654	0.03129351	0.878446	356.70026	0	12.685028						236	10	4	NaN	NaN	NaN	0.507	1	14147	14147		19.164	2.3053	1	29479	+		24518	9893;8377	14151	14555	19483	19483					-0.07500328997730321
SMTRYFYL	8	Unmodified	_SMTRYFYL_					0	0	0		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7627775555001	2	540.762778	1079.511	1.8885	0.0010212	-2.601	-0.0014065	-0.71244	-0.00038526	540.7627978319432	25.178	0.24125	25.178	25.129	25.371	0	1224	106	0.883646	0.064469576	0.883646	358.45248	0	26.15216						368	11	4	NaN	NaN	NaN	0.48912	1	11949	11949		31.675	4.9439	1	62648			24519	5666	14152	14556	19484	19484					-0.025572883201675722
SMTRYFYL	8	Unmodified	_SMTRYFYL_					0	0	0		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7627775555001	2	540.762778	1079.511	1.6711	0.00090368	-3.8624	-0.0020886	-2.1912	-0.0011849	540.7624729761502	25.226	0.16887	25.214	25.141	25.31	-0.012011	1227	88	0.88180584	0.053400338	0.8802864	357.706	0	21.661926						298	8	4	NaN	NaN	NaN	0.26128	1	11645	11645		45.165	24.609	1	53160			24520	5666	14152	14556	19485	19485					-0.025572883201675722
SMTRYFYL	8	Oxidation (M)	_SM(Oxidation (M))TRYFYL_		SM(1)TRYFYL		SM(58)TRYFYL	0	0	1		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.76023486655	2	548.760235	1095.50592	1.7089	0.00093775	-0.13991	-7.6777E-05	1.5689	0.00086098	548.7603757735623	23.151	0.19299	23.138	23.09	23.283	-0.013294	1224	70	0.883646	0.042324543	0.88212657	358.3865	0	17.165833						284	9	3	NaN	NaN	NaN	0.13059	1	12310	12310		58.235	37.68	1	61096			24521	5666	14152	14557	19486	19486		578			-0.038015921827991406
SMTRYFYLF	9	Unmodified	_SMTRYFYLF_					0	0	0		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2969845136	2	614.296985	1226.57942	1.7009	0.0010448	0.33775	0.00020748	2.0386	0.0012523	614.2965171716286	29.932	0.24137	29.932	29.86	30.101	0	1125	106	0.9442611	0.064233184	0.9442611	382.4618	0	26.016907						918	11	7	NaN	NaN	NaN	0.040769	1	17146	17146		50.831	23.042	1	449780			24522	5666	14153	14558	19487	19487					-0.024810437403175456
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(44)TRYFYLF	0	0	1		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.29444182465	2	622.294442	1242.57433	2.0179	0.0012558	-3.1901	-0.0019852	-1.1722	-0.00072943	622.2928360684219	28.388	0.3137	28.388	28.315	28.629	0	1131	112	0.94059354	0.0679037	0.94059354	380.92175	0	27.499664						995	14	5	NaN	NaN	NaN	0.057383	1	17593	17593		43.776	15.109	1	497840			24523	5666	14153	14559	19488	19488		578			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(56)TRYFYLF	0	0	1		ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	ENST00000531091.5_1_11:104774182-104777189:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.29444182465	2	622.294442	1242.57433	1.2705	0.0007906	-3.2905	-0.0020477	-2.0201	-0.0012571	622.2925919893573	28.411	0.38607	28.402	28.305	28.692	-0.0089798	1131	106	0.94059354	0.06422627	0.93907416	380.92175	0	26.010376						1266	17	5	NaN	NaN	NaN	0.032689	1	16845	16845		55.592	21.893	1	509780			24524	5666	14153	14559	19489	19489		578			-0.03725347602949114
SMTSSGVS	8	Unmodified	_SMTSSGVS_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3239955126002	1	755.323996	754.316719	2.0071	0.001516	4.7815	0.0036116	6.7886	0.0051276	755.3278386535652	25.636	0.1448	25.636	25.588	25.732	0	576	46	1.2765218	0.02696979	1.2765218	260.3193	0	5.4999084						93	7	2	NaN	NaN	NaN	0.82797	1	4137	4137		5.4659	0	1	7180.3			24525	5920	14154	14560	19490	19490					-0.07026664476097721
SMYCVARPNE	10	Unmodified	_SMYCVARPNE_					0	0	0		ENST00000337339.6_1_X:11784030-11784237:+|nuORF	ENST00000337339.6_1_X:11784030-11784237:+|nuORF	ENST00000337339.6_1_X:11784030-11784237:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2575333896001	2	585.257533	1168.50051	1.9896	0.0011644	2.8723	0.001681	4.8619	0.0028455	585.2588360644339	29.739	0.24135	29.739	29.667	29.908	0	1215	79	0.8891654	0.047842503	0.8891654	360.34506	0	19.388763						435	11	3	NaN	NaN	NaN	0.66626	1	15423	15423		10.36	1.3982	1	50457			24526	6527	14155	14561	19491	19491					-0.07699639036900408
SNAGGGSA	8	Unmodified	_SNAGGGSA_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.2634441662999	1	620.263444	619.256168	1.1955	0.00074152	-5.4137	-0.0033579	-4.2182	-0.0026164	620.2594021115403	29.136	0.072393	29.136	29.112	29.184	0	1179	43	0.9112251	0.025711298	0.9112251	186.547	0	5.2636414						63	4	2	NaN	NaN	NaN	0.84945	1	1137	1137		0	0	1	4267.6	+		24527	9383	14156	14562	19492	19492					-0.06869013744199037
SNDPEVKLE	9	Unmodified	_SNDPEVKLE_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7562037336501	2	515.756204	1029.49785	1.8524	0.00095536	-10.601	-0.0054673	-8.7483	-0.004512	515.75068677699	15.724	0.19174	15.711	15.663	15.855	-0.012611	1305	37	0.83389086	0.022145689	0.8323714	338.47626	0	8.988922						121	9	2	NaN	NaN	NaN	0.6532	1	9549	9549		3.2116	0.42642	1	10471	+		24528	10008	14157	14563	19493	19493					-0.01571447898572842
SNESFGYTE	9	Unmodified	_SNESFGYTE_					0	0	0		tr|U7SUL3|U7SUL3_FUSNUGlyceraldehyde-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01214PE=3SV=1	tr|U7SUL3|U7SUL3_FUSNUGlyceraldehyde-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01214PE=3SV=1	tr|U7SUL3|U7SUL3_FUSNUGlyceraldehyde-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01214PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.20908636555	2	517.209086	1032.40362	1.1395	0.00058934	1.026	0.00053067	2.1655	0.00112	517.7105088311087	29.014	0.14479	29.007	28.958	29.103	-0.0077209	1338	43	0.81357855	0.025867462	0.8120591	330.21915	0	10.499207						131	7	3	NaN	NaN	NaN	0.59509	1	9663	9663		5.6942	0.2283	1	9829.4			24529	13890	14158	14564	19494	19494					-0.11128586720724343
SNFIQTHVPE	10	Unmodified	_SNFIQTHVPE_					0	0	0		nc|ENSG00000205085|Q6NXP2|GARIN1A	nc|ENSG00000205085|Q6NXP2|GARIN1A	nc|ENSG00000205085|Q6NXP2|GARIN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.29074504275	2	586.290745	1170.56694	1.2083	0.00070843	2.3074	0.0013528	3.5157	0.0020612	586.2935361676374	24.743	0.12064	24.731	24.707	24.827	-0.012394	1176	70	0.9130621	0.042269647	0.91154265	370.02188	0	17.129944						112	6	2	NaN	NaN	NaN	0.65742	1	14964	14964		10.965	1.3535	1	19017			24530	8017	14159	14565	19495	19495					-0.011523638790094992
SNGGGGGK	8	Unmodified	_SNGGGGGK_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.2950786457	1	633.295079	632.287802	1.9094	0.0012092	-6.4129	-0.0040613	-4.5035	-0.0028521	633.290743058367	25.394	0.048241	25.382	25.382	25.431	-0.012011	828	100	1.1248186	0.05981815	1.1232992	230.17169	0	12.240585						113	3	2	NaN	NaN	NaN	0.84945	1	1443	1443		0	0	1	12701			24531	3952	14160	14566	19496	19496					-0.04305020990250341
SNGPLPDP	8	Unmodified	_SNGPLPDP_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	796.383559302	1	796.383559	795.376283	2.6055	0.002075	-2.7544	-0.0021936	-0.14897	-0.00011864	796.3808711863804	25.998	0.048283	25.987	25.962	26.011	-0.011137	510	34	1.316029	0.019722939	1.3145095	268.12845	0	4.018402						49	3	2	NaN	NaN	NaN	0.80692	1	4603	4603		8.2903	0	1	6610.9			24532	1240	14161	14567	19497	19497					-0.029590254704316976
SNGPSKFC	8	Unmodified	_SNGPSKFC_					0	0	0		CMA1|p.F54L|1|0.17|ENSG00000092009|chr14:24507403-24507403|G/C|missense_variant;ENSG00000092009|ENST00000250378|CMA1	CMA1|p.F54L|1|0.17|ENSG00000092009|chr14:24507403-24507403|G/C|missense_variant	CMA1|p.F54L|1|0.17|ENSG00000092009|chr14:24507403-24507403|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.3716144072	1	839.371614	838.364338	-0.4232	-0.00035522	5.4721	0.0045931	5.0489	0.0042379	839.3765771688326	46.556	0.26381	46.566	46.47	46.733	0.0098152	420	49	1.3697531	0.02860713	1.3682337	278.83124	0	5.8233643						225	12	3	NaN	NaN	NaN	0.84512	1	5114	5114		2.4615	0.79115	1	19998			24533	171	14162	14568	19498	19498					-0.061309654852720996
SNHAPAAP	8	Unmodified	_SNHAPAAP_					0	0	0		ENST00000301459.4_1_11:63684068-63684296:-|nuORF	ENST00000301459.4_1_11:63684068-63684296:-|nuORF	ENST00000301459.4_1_11:63684068-63684296:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.3685779397999	1	764.368578	763.361301	1.2067	0.00092236	-10.437	-0.0079777	-9.2303	-0.0070553	764.3605110139034	37.145	0.19298	37.145	37.072	37.265	0	1179	85	0.9112251	0.051478148	0.9112251	185.78558	0	10.4956665						248	9	2	NaN	NaN	NaN	0.84876	1	4257	4257		0.39566	0	1	24457			24534	6413	14163	14569	19499	19499					-0.02984472547780115
SNHAPAAP	8	Unmodified						0	0	0		ENST00000301459.4_1_11:63684068-63684296:-|nuORF	ENST00000301459.4_1_11:63684068-63684296:-|nuORF	ENST00000301459.4_1_11:63684068-63684296:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.368578	763.361301	1.1848	0.00090562	-9.5012	-0.0072624	-8.3164	-0.0063568	764.3611385438581	37.142	0.19268	37.145	37.072	37.265	0.0022507	1182	76	0.9093879	0.04595518	0.90786844	185.411		9.369598	-0.00010816	0.00042564	-0.0016783	NaN	0.39566	197	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17558			24535	6413	14163	14569							-0.02984472547780115
SNHSPGGSR	9	Unmodified	_SNHSPGGSR_					0	0	0		ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.4125680195002	1	898.412568	897.405292	1.5155	0.0013615	-6.8076	-0.006116	-5.2921	-0.0047545	898.4062415924252	27.326	0.12065	27.326	27.253	27.374	0	342	43	1.4161754	0.024962068	1.4161754	287.9751	0	5.0759583						82	6	2	NaN	NaN	NaN	0.6532	1	6018	6018		3.2116	0.058268	1	5775.6			24536	3826	14164	14570	19500	19500					-0.04751488121416969
SNKIGAPG	8	Unmodified	_SNKIGAPG_					0	0	0		ENST00000487651.5_1_7:100456676-100456913:+|nuORF	ENST00000487651.5_1_7:100456676-100456913:+|nuORF	ENST00000487651.5_1_7:100456676-100456913:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.20595278085	2	372.205953	742.397353	-0.25343	-9.4328E-05	-1.0165	-0.00037833	-1.2699	-0.00047266	372.20546635437967	55.218	0.14429	55.217	55.169	55.314	-0.00061798	1434	49	0.75435036	0.02966547	0.7528309	307.7479	0	12.102478						161	7	3	NaN	NaN	NaN	0.84876	1	3872	3872		0.39566	0	1	33063			24537	7245	14165	14571	19501	19501					0.015849846290961978
SNKLFFIF	8	Unmodified	_SNKLFFIF_					0	0	0			REV__tr|U7SM22|U7SM22_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02022PE=4SV=1	REV__tr|U7SM22|U7SM22_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02022PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.28420310185004	2	508.284203	1014.55385	1.7235	0.00087604	-1.9322	-0.00098209	-0.20865	-0.00010605	508.28301686780003	29.015	0.21721	29.015	28.967	29.184	0	1308	46	0.83204526	0.027683675	0.83204526	337.79272	0	11.238953						300	10	4	NaN	NaN	NaN	0.72013	1	9162	9162		17.799	1.2148	1	67144	+		24538	13430	14166	14572	19502	19502					0.04715849799572425
SNNQVQLW	8	Unmodified	_SNNQVQLW_					0	0	0		nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15;ENST00000573740.1_1_17:4542344-4544955:-|nuORF;ALOX15|p.C378Afs*12|1|0.12|ENSG00000161905|chr17:4635788-4635788|A/-|frameshift_variant	nc|ENSG00000161905|P16050-2|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.4846703301001	1	988.48467	987.477394	0.94691	0.00093601	2.4204	0.0023926	3.3673	0.0033286	988.4875369050627	31.62	0.096527	31.616	31.592	31.688	-0.0044155	291	49	1.446459	0.028473496	1.4449396	293.72763	0	5.782013						84	5	2	NaN	NaN	NaN	0.23625	1	7955	7955		47.136	17.537	1	10380			24539	4108	14167	14573	19503	19503					-0.016845737677158468
SNNQVQLW	8	Unmodified						0	0	0		nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15;ENST00000573740.1_1_17:4542344-4544955:-|nuORF;ALOX15|p.C378Afs*12|1|0.12|ENSG00000161905|chr17:4635788-4635788|A/-|frameshift_variant	nc|ENSG00000161905|P16050-2|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.48467	987.477394	1.3413	0.0013258	2.745	0.0027134	4.0863	0.0040392	988.488186506646	31.646	0.12069	31.646	31.597	31.718	0	291	49	1.446459	0.028476596	1.446459	293.72763		5.782654	0.014806	0.00014745	0.00075972	NaN	47.136	127	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13088			24540	4108	14167	14573							-0.016845737677158468
SNPPGAPA	8	Unmodified	_SNPPGAPA_					0	0	0		nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C;nc|ENSG00000118454|Q8N6S4-3|ANKRD13C	nc|ENSG00000118454|Q8N6S4-2|ANKRD13C	nc|ENSG00000118454|Q8N6S4-2|ANKRD13C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3467798652	1	710.34678	709.339503	0.98596	0.00070038	4.6121	0.0032762	5.598	0.0039765	710.349767659985	27.301	0.16893	27.291	27.267	27.436	-0.010126	681	64	1.2134778	0.037883043	1.2119584	247.74284	0	7.7341766						119	8	2	NaN	NaN	NaN	0.8439	1	3349	3349		3.1533	0	1	8818.7			24541	2176	14168	14574	19504	19504					-0.026792772963403877
SNSCGTSRPL	10	Unmodified	_SNSCGTSRPL_					0	0	0			REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.4731193658	1	1021.47312	1020.46584	2.4265	0.0024786	-1.3153	-0.0013436	1.1112	0.001135	1021.4672956728356	28.532	0.12067	28.532	28.508	28.629	0	225	58	1.4855686	0.033735156	1.4855686	301.53522	0	6.8474426						140	6	2	NaN	NaN	NaN	0.5358	1	9375	9375		17.97	1.3855	1	14932	+		24542	11920	14169	14575	19505	19505					-0.043571388533678146
SNSCGTSRPL	10	Unmodified						0	0	0			REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1021.47312	1020.46584	2.4265	0.0024786	-1.3153	-0.0013436	1.1112	0.001135	1021.4672956728356	28.532	0.12067	28.532	28.508	28.629	0	225	58	1.4855686	0.033735156	1.4855686	301.53522		6.8474426	0.0045422	0.0033117	-0.00012805	NaN	17.97	140	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14932	+		24543	11920	14169	14575							-0.043571388533678146
SNSKQKFQY	9	Unmodified	_SNSKQKFQY_					0	0	0		ENSG00000162669|ENST00000370425|HFM1;HFM1|p.C500Afs*12|1|0.16|ENSG00000162669|chr1:91375626-91375626|G/-|frameshift_variant	ENSG00000162669|ENST00000370425|HFM1	ENSG00000162669|ENST00000370425|HFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.2854626996001	2	565.285463	1128.55637	2.4827	0.0014034	1.8358	0.0010377	4.3184	0.0024411	565.2873023156188	25.805	0.16891	25.805	25.781	25.95	0	1218	91	0.8873258	0.0552029	0.8873258	359.748	0	22.38086						208	8	2	NaN	NaN	NaN	0.31471	1	14027	14027		17.97	2.507	1	100790			24544	4160	14170	14576	19506	19506					-0.002763465334282955
SNSKQKFQY	9	Unmodified						0	0	0		ENSG00000162669|ENST00000370425|HFM1;HFM1|p.C500Afs*12|1|0.16|ENSG00000162669|chr1:91375626-91375626|G/-|frameshift_variant	ENSG00000162669|ENST00000370425|HFM1	ENSG00000162669|ENST00000370425|HFM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.285463	1128.55637	2.1423	0.001211	1.949	0.0011017	4.0913	0.0023127	565.2872549571325	25.829	0.16894	25.817	25.793	25.962	-0.011602	1212	76	0.8910048	0.04600489	0.88948536	361.23956		18.651733	0.0061422	5.7995E-05	0.0010798	NaN	17.97	206	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97121			24545	4160	14170	14576							-0.002763465334282955
SNSLEAACA	9	Unmodified	_SNSLEAACA_					0	0	0			REV__ENST00000555525.1_1_14:93754985-93755075:-|nuORF	REV__ENST00000555525.1_1_14:93754985-93755075:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.3720083376999	1	865.372008	864.364732	1.8367	0.0015894	-3.0959	-0.0026791	-1.2592	-0.0010897	865.3695077211734	20.911	0.072218	20.911	20.887	20.959	0	486	31	1.3303722	0.017921448	1.3303722	270.68335	0	3.6463928						43	4	2	NaN	NaN	NaN	0.49672	1	5580	5580		9.746	1.4557	1	2279.7	+		24546	12763	14171	14577	19507	19507					-0.07287590556086343
SNSSQPKVLEY	11	Unmodified	_SNSSQPKVLEY_					0	0	0		nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3144171043001	2	626.314417	1250.61428	1.791	0.0011217	-9.0544	-0.0056709	-7.2633	-0.0045491	626.8113415330962	22.332	0.12058	22.332	22.236	22.356	0	1152	61	0.92775106	0.036706626	0.92775106	375.6943	0	14.86441						274	6	4	NaN	NaN	NaN	0.76276	1	17785	17785		3.261	0.37153	1	62110			24547	3739	14172	14578	19508	19508					-0.0010012939865191584
SNSTLHSS	8	Unmodified	_SNSTLHSS_					0	0	0			REV__ENST00000305699.15_1_16:89806300-89831390:-|nuORF	REV__ENST00000305699.15_1_16:89806300-89831390:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.3795365566001	1	832.379537	831.37226	1.6512	0.0013744	-4.6038	-0.0038321	-2.9526	-0.0024577	832.3769511692199	27.519	0.12069	27.519	27.495	27.615	0	501	49	1.3214091	0.028689504	1.3214091	269.02673	0	5.8409424						89	6	2	NaN	NaN	NaN	0.83211	1	5147	5147		4.9097	0.49665	1	6333.9	+		24548	11034	14173	14579	19509	19509					-0.05017114964130087
SNSVVFESNF	10	Unmodified	_SNSVVFESNF_					0	0	0		nc|ENSG00000205085|Q6NXP2|GARIN1A;ENSG00000205085|ENST00000682356|GARIN1A	nc|ENSG00000205085|Q6NXP2|GARIN1A	nc|ENSG00000205085|Q6NXP2|GARIN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2616532523001	2	565.261653	1128.50875	1.7087	0.00096585	1.0073	0.00056938	2.716	0.0015352	565.2622603801987	23.344	0.16889	23.331	23.283	23.451	-0.013294	1173	64	0.91489893	0.038573205	0.9133795	370.92715	0	15.638702						277	8	3	NaN	NaN	NaN	0.65442	1	13577	13577		11.17	1.5587	1	35091			24549	8017	14174	14580	19510	19510					-0.05036045524275323
SNTYVMVVM	9	Unmodified	_SNTYVMVVM_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.4900149834	1	1043.49001	1042.48274	1.3016	0.0013582	1.0688	0.0011152	2.3704	0.0024734	1043.4907656243297	27.832	0.072454	27.822	27.798	27.87	-0.009552	135	49	1.5387528	0.028325915	1.5372335	312.2424	0	5.747864						90	4	2	NaN	NaN	NaN	0.19268	1	10102	10102		25.801	12.798	1	7861.6			24550	3893	14175	14581	19511	19511					-0.03680354291759613
SNTYVMVVM	9	Unmodified						0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1043.49001	1042.48274	1.7332	0.0018086	1.1561	0.0012063	2.8893	0.0030149	1043.491014914117	27.808	0.072386	27.808	27.784	27.857	0	138	46	1.5369828	0.026551247	1.5369828	311.8832		5.3877563	-0.0068736	6.39E-05	-0.00012532	NaN	25.801	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7238.1			24551	3893	14175	14581							-0.03680354291759613
SNWDRYQDI	9	Unmodified	_SNWDRYQDI_					0	0	0		ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.77017677615	2	598.770177	1195.5258	1.7514	0.0010487	-8.3218	-0.0049828	-6.5704	-0.0039342	598.7637125108421	26.288	0.16892	26.288	26.215	26.384	0	1164	85	0.9204082	0.051417053	0.9204082	372.90823	0	20.831879						242	8	3	NaN	NaN	NaN	0.38313	1	16321	16321		14.425	4.8134	1	30855			24552	4697	14176	14582	19512	19512					-0.06414124918478592
SNWDRYQDI	9	Unmodified						0	0	0		ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	ENSG00000169857|ENST00000306730|AVEN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	598.770177	1195.5258	1.2677	0.00075903	-9.825	-0.0058829	-8.5573	-0.0051239	598.763559239124	26.287	0.1206	26.276	26.228	26.349	-0.011137	1164	70	0.9204082	0.04224229	0.91888875	372.90826		17.114685	-0.005678	-0.00083426	-0.00075972	NaN	14.425	161	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28048			24553	4697	14176	14582							-0.06414124918478592
SNYTYTSL	8	Unmodified	_SNYTYTSL_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4309034251002	1	948.430903	947.423627	1.7911	0.0016988	-0.15731	-0.0001492	1.6338	0.0015496	948.4302139789932	30.246	0.2413	30.246	30.198	30.439	0	330	70	1.4233059	0.04099822	1.4233059	289.19415	0	8.3302						281	11	3	NaN	NaN	NaN	0.75561	1	7006	7006		15.175	2.5875	1	31528	+		24554	13440	14177	14583	19513	19513					-0.05218790990079469
SPAADNIEM	9	Unmodified	_SPAADNIEM_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4138731524	1	947.413873	946.406597	1.8367	0.0017401	0.3197	0.00030289	2.1564	0.002043	947.4138242591447	19.732	0.19212	19.732	19.66	19.852	0	357	58	1.407258	0.033904195	1.407258	285.93787	0	6.888916						147	9	2	NaN	NaN	NaN	0.070055	1	6981	6981		40.154	14.039	1	10954			24555	1716	14178	14584	19514	19514					-0.06875034867550767
SPAADNIEM	9	Unmodified	_SPAADNIEM_					0	0	0		ENSG00000109180|ENST00000264312|OCIAD1;ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	ENSG00000109180|ENST00000264312|OCIAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4138731524	1	947.413873	946.406597	1.5366	0.0014558	0.69547	0.0006589	2.232	0.0021147	947.4147673436203	19.731	0.19253	19.717	19.621	19.813	-0.014141	357	46	1.407258	0.026760697	1.4057386	285.93787	0	5.4374695						175	9	2	NaN	NaN	NaN	0.02857	1	6847	6847		60.982	20.828	1	15166			24556	1716	14178	14584	19515	19515					-0.06875034867550767
SPAASGKLPL	10	Unmodified	_SPAASGKLPL_					0	0	0		ENST00000471892.6_1_5:137503584-137506561:-|nuORF	ENST00000471892.6_1_5:137503584-137506561:-|nuORF	ENST00000471892.6_1_5:137503584-137506561:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.7767422105	2	470.776742	939.538931	-1.1213	-0.00052789	-4.1525	-0.0019549	-5.2739	-0.0024828	470.7752252343682	55.891	0.096043	55.89	55.866	55.962	-0.00059128	1350	34	0.80618626	0.020334303	0.8046668	327.64398	0	8.26413						72	5	2	NaN	NaN	NaN	0.74182	1	6681	6681		5.1889	0.77579	1	5005.8			24557	7157	14179	14585	19516	19516					0.0667435793156983
SPAEDFVL	8	Unmodified	_SPAEDFVL_					0	0	0		nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.4301751436	1	877.430175	876.422899	1.3097	0.0011492	1.236	0.0010845	2.5458	0.0022337	877.4311398737516	26.988	0.096506	26.988	26.964	27.06	0	399	67	1.382264	0.03932643	1.382264	281.18088	0	7.9997864						109	5	2	NaN	NaN	NaN	0.67593	1	5750	5750		20.555	2.7751	1	8187.9			24558	1334	14180	14586	19517	19517					-0.020255856391486304
SPAEDFVL	8	Unmodified	_SPAEDFVL_					0	0	0		nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.4301751436	1	877.430175	876.422899	1.1173	0.00098038	0.9939	0.00087208	2.1112	0.0018525	877.4307906295804	26.987	0.096552	26.977	26.953	27.049	-0.010126	405	67	1.3786905	0.039322257	1.377171	280.45395	0	7.998932						97	5	2	NaN	NaN	NaN	0.6053	1	5623	5623		24.961	8.5444	1	8299.4			24559	1334	14180	14586	19518	19518					-0.020255856391486304
SPAEFFELM	9	Unmodified	_SPAEFFELM_					0	0	0		PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.D279Afs*32|1|0.23|ENSG00000087157|chr17:78400811-78400811|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.486309814	1	1070.48631	1069.47903	1.0837	0.0011601	0.72341	0.0007744	1.8071	0.0019345	1070.4864425868066	33.769	0.1448	33.769	33.721	33.866	0	171	79	1.5174994	0.046073437	1.5174994	307.82816	0	9.3461						285	7	3	NaN	NaN	NaN	0.023828	1	11527	11527		67.154	25.37	1	37144			24560	1002	14181	14587	19519	19519					-0.05292700793984295
SPAEFFELM	9	Unmodified	_SPAEFFELM_					0	0	0		PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.D279Afs*32|1|0.23|ENSG00000087157|chr17:78400811-78400811|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.486309814	1	1070.48631	1069.47903	0.57948	0.00062033	2.5295	0.0027077	3.1089	0.0033281	1070.490546223124	33.768	0.16899	33.766	33.694	33.863	-0.0018463	168	85	1.5192716	0.049607158	1.5177522	308.18762	0	10.062897						273	8	3	NaN	NaN	NaN	0.030669	1	11244	11244		58.235	31.504	1	34097			24561	1002	14181	14587	19520	19520					-0.05292700793984295
SPAEFFELM	9	Oxidation (M)	_SPAEFFELM(Oxidation (M))_		SPAEFFELM(1)		SPAEFFELM(87)	0	0	1		PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.D279Afs*32|1|0.23|ENSG00000087157|chr17:78400811-78400811|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	PGS1|p.S101F|1|0.18|ENSG00000087157|chr17:78392634-78392634|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.4812244360999	1	1086.48122	1085.47395	1.7174	0.0018659	-0.12713	-0.00013812	1.5903	0.0017278	1087.4841008567403	29.087	0.24135	29.087	28.943	29.184	0	144	73	1.533442	0.042497754	1.533442	311.00375	0	8.619171						328	11	3	NaN	NaN	NaN	0.011942	1	12191	12191		87.021	48.103	1	53564			24562	1002	14181	14588	19521	19521		109			-0.06537004656593126
SPAEGSERL	9	Unmodified	_SPAEGSERL_					0	0	0		nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	nc|ENSG00000130479|Q66K74-2|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.23543850179993	2	473.235439	944.456324	1.256	0.00059437	-2.7275	-0.0012907	-1.4715	-0.00069636	473.2345494610282	13.204	0.14415	13.204	13.156	13.3	0	1377	40	0.7895419	0.0240497	0.7895419	320.8554	0	9.773346						118	7	3	NaN	NaN	NaN	0.25548	1	6927	6927		21.771	0	1	10451			24563	2645	14182	14589	19522	19522					-0.018125838672517602
SPAKDFALL	9	Unmodified	_SPAKDFALL_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.27129269184996	2	481.271293	960.528032	1.853	0.00089179	-2.0942	-0.0010079	-0.2412	-0.00011608	481.27062651682843	23.562	0.12045	23.562	23.513	23.634	0	1347	43	0.8080346	0.025878608	0.8080346	328.2917	0	10.514069						83	6	2	NaN	NaN	NaN	0.54682	1	7347	7347		7.6826	0.81939	1	8035.7			24564	5048	14183	14590	19523	19523					0.04618955557270965
SPAKGEPSL	9	Unmodified	_SPAKGEPSL_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.2374498745	2	443.23745	884.460347	1.647	0.00073	-2.0534	-0.00091015	-0.40643	-0.00018015	443.2364749313654	14.045	0.38428	14.045	13.925	14.309	0	1404	70	0.77288127	0.042595625	0.77288127	314.39023	0	17.326904						585	17	3	NaN	NaN	NaN	0.040769	1	5861	5861		50.831	8.5132	1	142320			24565	5618	14184	14591	19524	19524					0.013495056264787308
SPAKGEPSL	9	Unmodified	_SPAKGEPSL_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.2374498745	2	443.23745	884.460347	1.3064	0.00057906	-1.5317	-0.00067892	-0.2253	-9.9861E-05	443.2366626564542	14.069	0.38346	14.058	13.938	14.322	-0.010672	1401	61	0.77473325	0.037033617	0.7732138	315.14355	0	15.064423						557	17	4	NaN	NaN	NaN	0.017791	1	5741	5741		74.794	13.812	1	132860			24566	5618	14184	14591	19525	19525					0.013495056264787308
SPAPEEKAVTL	11	Unmodified	_SPAPEEKAVTL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.3086034449001	2	571.308603	1140.60265	1.7137	0.00097903	-1.0466	-0.00059793	0.66705	0.00038109	571.3073489582553	17.834	0.095913	17.82	17.772	17.868	-0.013786	1254	34	0.8652351	0.020261824	0.86371565	350.74707	0	8.213715						92	5	3	NaN	NaN	NaN	0.6678	1	14010	14010		9.5705	2.7073	1	9299.3			24567	5676	14185	14592	19526	19526					0.037976735780148374
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5306174696998	1	1099.53062	1098.52334	2.0977	0.0023064	-1.4929	-0.0016415	0.60474	0.00066493	1099.5287291729262	28.556	0.21724	28.556	28.436	28.653	0	99	142	1.5599792	0.08314121	1.5599792	316.33868	0	16.85971						684	10	4	NaN	NaN	NaN	0.013201	1	12778	12778		67.154	39.365	1	231310			24568	5635	14186	14593	19527	19527					-0.0219797337615546
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.26894696815	2	550.268947	1098.52334	1.3248	0.00072898	0.51544	0.00028363	1.8402	0.0010126	550.2688336350599	28.556	0.072409	28.556	28.532	28.605	0	1248	67	0.8689189	0.0405522	0.8689189	352.40152	0	16.446472						63	4	2	NaN	NaN	NaN	0.29898	1	12779	12779		27.789	14.326	1	8916.5			24569	5635	14186	14593	19528	19528					-0.0219797337615546
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.26894696815	2	550.268947	1098.52334	1.0973	0.00060382	-1.3796	-0.00075915	-0.28228	-0.00015533	550.2681174763594	28.556	0.12062	28.547	28.475	28.596	-0.0083504	1251	91	0.8670771	0.05531043	0.8655577	351.65454	0	22.431854						123	6	2	NaN	NaN	NaN	0.47601	1	12445	12445		20.449	7.4458	1	17918			24570	5635	14186	14593	19529	19529					-0.0219797337615546
SPASDTYIVF	10	Unmodified	_SPASDTYIVF_					0	0	0		nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|Q13765|NACA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1099.5306174696998	1	1099.53062	1098.52334	1.9561	0.0021508	-1.329	-0.0014613	0.62704	0.00068945	1099.5299432584634	28.556	0.16887	28.547	28.499	28.668	-0.0083504	99	121	1.5599792	0.070739746	1.5584598	316.33868	0	14.344879						648	8	5	NaN	NaN	NaN	0.033206	1	12447	12447		58.235	32.121	1	207350			24571	5635	14186	14593	19530	19530					-0.0219797337615546
SPCHGDGC	8	Unmodified	_SPCHGDGC_					0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2497847120001	1	775.249785	774.242508	1.8972	0.0014708	-0.38306	-0.00029696	1.5142	0.0011739	775.2533127626248	59.828	0.095867	59.828	59.78	59.876	0	606	37	1.2585332	0.021597743	1.2585332	256.53296	0	4.4023743						69	5	2	NaN	NaN	NaN	0.84945	1	4410	4410		0	0	1	4230.3	+		24572	12953	14187	14594	19531	19531					-0.15364330839281592
SPCHGDGC	8	Unmodified	_SPCHGDGC_					0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2497847120001	1	775.249785	774.242508	1.7962	0.0013925	-0.019741	-1.5304E-05	1.7765	0.0013772	775.2530121605657	58.773	0.11998	58.773	58.749	58.869	0	597	55	1.2639319	0.03238964	1.2639319	257.6334	0	6.6021423						159	6	2	NaN	NaN	NaN	0.84945	1	4411	4411		0	0	1	15922	+		24573	12953	14187	14594	19532	19532					-0.15364330839281592
SPCHGDGC	8	Unmodified	_SPCHGDGC_					0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.2497847120001	1	775.249785	774.242508	0.0069738	5.4065E-06	0.681	0.00052795	0.68798	0.00053335	775.2547847670421	59.274	0.095798	59.274	59.178	59.274	-0.00045395	588	55	1.2693287	0.032382727	1.2678093	258.73346	0	6.6007385						93	5	2	NaN	NaN	NaN	0.84945	1	4336	4336		0	0	1	7138.8	+		24574	12953	14187	14594	19533	19533					-0.15364330839281592
SPCHGDGC	8	Unmodified	_SPCHGDGC_					0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.2497847120001	1	775.249785	774.242508	0.26138	0.00020264	3.6656	0.0028417	3.927	0.0030444	775.2552822956499	58.842	0.048035	58.842	58.818	58.866	-0.00045395	597	37	1.2639319	0.021590829	1.2624124	257.63336	0	4.40094						54	3	2	NaN	NaN	NaN	0.84945	1	4337	4337		0	0	1	4494.4	+		24575	12953	14187	14594	19534	19534					-0.15364330839281592
SPCHGDGC	8	Unmodified						0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	775.249785	774.242508	1.7962	0.0013925	-0.019741	-1.5304E-05	1.7765	0.0013772	775.2530121605657	58.773	0.11998	58.773	58.749	58.869	0	597	55	1.2639319	0.03238964	1.2639319	257.6334		6.6021423	-0.03466	-0.0011097	0.00075972	NaN	0	159	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15922	+		24576	12953	14187	14594							-0.15364330839281592
SPCHGDGC	8	Unmodified						0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	775.249785	774.242508	0.26138	0.00020264	3.6656	0.0028417	3.927	0.0030444	775.2552822956499	58.842	0.048035	58.842	58.818	58.866	-0.00045395	597	37	1.2639319	0.021590829	1.2624124	257.63336		4.40094	0.03466	0.0017474	-0.00075972	NaN	0	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4494.4	+		24577	12953	14187	14594							-0.15364330839281592
SPCLVGNCAW	10	Unmodified	_SPCLVGNCAW_					0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.23078732285	2	525.230787	1048.44702	1.8321	0.0009623	-1.6881	-0.00088666	0.144	7.5633E-05	525.2296913365524	25.684	0.12063	25.684	25.66	25.781	0	1305	46	0.83389086	0.027680635	0.83389086	338.39548	0	11.23291						78	6	2	NaN	NaN	NaN	0.77421	1	10553	10553		1.9246	0.6828	1	6519.2		+	24578	220	14188	14595	19535	19535					-0.07526391748774586
SPCLVGNCAW	10	Unmodified						0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.230787	1048.44702	2.0407	0.0010718	-2.2681	-0.0011913	-0.22747	-0.00011947	525.2296530574063	25.684	0.0965	25.672	25.648	25.745	-0.0116	1305	49	0.83389086	0.029530823	0.8323714	338.39548		11.983704	-0.0059418	-0.00026178	-0.00075972	NaN	1.9246	99	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7518		+	24579	220	14188	14595							-0.07526391748774586
SPDAEEPQL	9	Unmodified	_SPDAEEPQL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.4472817708	1	985.447282	984.440005	2.0359	0.0020062	-0.3967	-0.00039093	1.6392	0.0016153	985.4466711435283	19.444	0.144	19.444	19.42	19.564	0	312	58	1.433996	0.033839345	1.433996	291.20917	0	6.8719177						133	7	2	NaN	NaN	NaN	0.032689	1	8021	8021		55.592	15.438	1	11218			24580	7955	14189	14596	19536	19536					-0.052837098239933766
SPDAKIFCL	9	Unmodified	_SPDAKIFCL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.25732803684997	2	497.257328	992.500103	2.143	0.0010656	-2.5193	-0.0012527	-0.37625	-0.00018709	497.2560503982415	25.708	0.41015	25.708	25.539	25.95	0	1314	52	0.8283535	0.031384945	0.8283535	336.39392	0	12.745422						358	18	3	NaN	NaN	NaN	0.17328	1	8313	8313		27.046	2.4844	1	45975			24581	3893	14190	14597	19537	19537					0.00355309305530227
SPDAKIFCL	9	Unmodified	_SPDAKIFCL_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.25732803684997	2	497.257328	992.500103	1.6936	0.00084213	-1.3617	-0.00067713	0.33183	0.000165	497.25683516398766	25.732	0.19305	25.721	25.672	25.865	-0.0116	1311	55	0.83019954	0.033232927	0.8286801	337.14355	0	13.49588						268	9	4	NaN	NaN	NaN	0.12104	1	8146	8146		32.778	8.216	1	36140			24582	3893	14190	14597	19538	19538					0.00355309305530227
SPDAPDFQL	9	Unmodified	_SPDAPDFQL_					0	0	0		ENST00000476641.2_1_20:40101874-40113142:-|nuORF;ENSG00000124177|ENST00000373233|CHD6	ENST00000476641.2_1_20:40101874-40113142:-|nuORF	ENST00000476641.2_1_20:40101874-40113142:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	989.4574525265999	1	989.457453	988.450176	2.5143	0.0024877	-1.503	-0.0014871	1.0113	0.0010006	989.4557001890167	25.998	0.16897	25.998	25.95	26.119	0	261	76	1.4642475	0.044463873	1.4642475	297.33588	0	9.029022						257	8	3	NaN	NaN	NaN	0.01966	1	8153	8153		72.428	35.126	1	24819			24583	2400	14191	14598	19539	19539					-0.044511020987670236
SPDAPDFQL	9	Unmodified	_SPDAPDFQL_					0	0	0		ENST00000476641.2_1_20:40101874-40113142:-|nuORF;ENSG00000124177|ENST00000373233|CHD6	ENST00000476641.2_1_20:40101874-40113142:-|nuORF	ENST00000476641.2_1_20:40101874-40113142:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	989.4574525265999	1	989.457453	988.450176	2.3614	0.0023365	-0.62685	-0.00062024	1.7345	0.0017163	989.4572649026863	25.998	0.16895	25.987	25.938	26.107	-0.011137	261	79	1.4642475	0.046239972	1.462728	297.33585	0	9.389679						212	8	2	NaN	NaN	NaN	0.04743	1	7985	7985		48.002	17.392	1	22644			24584	2400	14191	14598	19540	19540					-0.044511020987670236
SPDDELLYL	9	Unmodified	_SPDDELLYL_					0	0	0		nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;chr3:189869406-189871747|280|27.48|0.14|7.65|+|0|TP63,None|1	nc|ENSG00000073282|Q9H3D4-8|TP63;chr3:189869406-189871747|280|27.48|0.14|7.65|+|0|TP63,None|1	nc|ENSG00000073282|Q9H3D4-8|TP63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5146330544999	1	1064.51463	1063.50736	1.088	0.0011582	-1.3197	-0.0014049	-0.23175	-0.0002467	1064.51418691398	30.824	0.14483	30.818	30.77	30.915	-0.0057564	129	73	1.5422925	0.042466283	1.540773	312.87985	0	8.61499						176	7	2	NaN	NaN	NaN	0.056143	1	11012	11012		44.302	0	1	28216			24585	809;142	14192	14599	19541	19541					-0.021856796130578005
SPDDLDFRL	9	Unmodified	_SPDDLDFRL_					0	0	0		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.26419594125	2	539.264196	1076.51384	2.0571	0.0011093	-0.1173	-6.3256E-05	1.9398	0.0010461	539.2632602687156	25.371	0.14478	25.371	25.346	25.491	0	1272	76	0.854179	0.04605961	0.854179	346.5113	0	18.684814						259	7	3	NaN	NaN	NaN	0.02431	1	11819	11819		66.544	30.309	1	50563			24586	3238	14193	14600	19542	19542					-0.021357416616638147
SPDDLDFRL	9	Unmodified	_SPDDLDFRL_					0	0	0		nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-1|DIAPH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.26419594125	2	539.264196	1076.51384	1.7305	0.0009332	4.336	0.0023383	6.0666	0.0032715	539.2649561465222	25.394	0.16889	25.382	25.334	25.503	-0.012011	1272	70	0.854179	0.04238403	0.8526596	346.51126	0	17.193726						322	8	3	NaN	NaN	NaN	0.064504	1	11505	11505		40.957	15.156	1	52086			24587	3238	14193	14600	19543	19543					-0.021357416616638147
SPDDLELEL	9	Unmodified	_SPDDLELEL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.4938976123997	1	1030.4939	1029.48662	1.675	0.0017261	2.6147	0.0026945	4.2898	0.0044206	1030.493639527374	28.87	0.16893	28.87	28.822	28.991	0	195	103	1.5033154	0.06028819	1.5033154	305.10175	0	12.235657						289	8	2	NaN	NaN	NaN	0.036546	1	9748	9748		52.624	13.165	1	48159			24588	3740	14194	14601	19544	19544					-0.026942699927303693
SPDDLELEL	9	Unmodified	_SPDDLELEL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.4938976123997	1	1030.4939	1029.48662	1.141	0.0011758	2.1973	0.0022643	3.3382	0.00344	1030.494018936053	28.869	0.14482	28.861	28.837	28.982	-0.0083504	189	97	1.5068626	0.056735873	1.5053432	305.82166	0	11.514679						272	7	2	NaN	NaN	NaN	0.094712	1	9550	9550		36.586	6.9881	1	45018			24589	3740	14194	14601	19545	19545					-0.026942699927303693
SPDEHEPLL	9	Unmodified	_SPDEHEPLL_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7509213905	2	518.750921	1035.48729	2.0244	0.0010502	-1.1015	-0.00057141	0.9229	0.00047876	518.7497048311311	19.036	0.23984	19.036	18.964	19.204	0	1272	91	0.854179	0.05532837	0.854179	346.6847	0	22.456055						395	11	3	NaN	NaN	NaN	0.12328	1	10004	10004		32.453	17.277	1	69221			24590	5866	14195	14602	19546	19546					-0.029034305530103666
SPDEHEPLL	9	Unmodified	_SPDEHEPLL_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7509213905	2	518.750921	1035.48729	1.6177	0.00083918	-1.5573	-0.00080786	0.060382	3.1323E-05	518.7496562698964	19.058	0.33635	19.044	18.9	19.236	-0.014059	1272	85	0.854179	0.051634252	0.8526596	346.6847	0	20.956726						514	14	3	NaN	NaN	NaN	0.062072	1	9794	9794		41.785	10.223	1	88393			24591	5866	14195	14602	19547	19547					-0.029034305530103666
SPDENENEV	9	Unmodified	_SPDENENEV_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7094505063	2	516.709451	1031.40435	2.3719	0.0012256	-2.0586	-0.0010637	0.31329	0.00016188	516.7085229416303	13.973	0.40819	13.973	13.853	14.261	0	1329	67	0.81912065	0.040644407	0.81912065	332.47287	0	16.497192						555	18	3	NaN	NaN	NaN	0.030669	1	9825	9825		58.235	39.117	1	95460			24592	2134	14196	14603	19548	19548					-0.11009792071672564
SPDENENEV	9	Unmodified	_SPDENENEV_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.4116245459998	1	1032.41162	1031.40435	1.3444	0.001388	-0.98584	-0.0010178	0.35858	0.0003702	1032.4099704405032	13.949	0.26377	13.938	13.842	14.106	-0.010672	309	52	1.435777	0.030274034	1.4342575	291.38748	0	6.144043						231	12	2	NaN	NaN	NaN	0.0035249	1	9614	9614		106.42	78.636	1	22913			24593	2134	14196	14603	19549	19549					-0.11009792071672564
SPDENENEV	9	Unmodified	_SPDENENEV_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7094505063	2	516.709451	1031.40435	1.4325	0.00074016	-1.0198	-0.00052696	0.41262	0.0002132	516.709002721067	13.949	0.28773	13.938	13.842	14.13	-0.010672	1329	70	0.81912065	0.042498827	0.8176012	332.47287	0	17.249847						542	13	3	NaN	NaN	NaN	0.060816	1	9615	9615		42.318	25.733	1	101660			24594	2134	14196	14603	19550	19550					-0.11009792071672564
SPDENLVSL	9	Unmodified	_SPDENLVSL_					0	0	0		ENST00000569761.1_1_15:75195123-75197568:-|nuORF;ENST00000566894.1_1_15:75197493-75197640:-|nuORF;ENST00000564857.1_1_15:75197493-75199009:-|nuORF;nc|ENSG00000178761|Q5XKK7-3|FAM219B;ENSG00000178761|ENST00000357635|FAM219B	ENST00000569761.1_1_15:75195123-75197568:-|nuORF	ENST00000569761.1_1_15:75195123-75197568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.24547187184993	2	487.245472	972.476391	1.7262	0.00084107	-1.7764	-0.00086556	-0.050264	-2.4491E-05	487.2446645410207	24.985	0.096546	24.985	24.936	25.033	0	1326	49	0.8209676	0.029556334	0.8209676	333.48834	0	12.006195						101	5	3	NaN	NaN	NaN	0.51576	1	7674	7674		8.962	0	1	8501.2			24595	5125	14197	14604	19551	19551					-0.010948329272878254
SPDENLVSL	9	Unmodified	_SPDENLVSL_					0	0	0		ENST00000569761.1_1_15:75195123-75197568:-|nuORF;ENST00000566894.1_1_15:75197493-75197640:-|nuORF;ENST00000564857.1_1_15:75197493-75199009:-|nuORF;nc|ENSG00000178761|Q5XKK7-3|FAM219B;ENSG00000178761|ENST00000357635|FAM219B	ENST00000569761.1_1_15:75195123-75197568:-|nuORF	ENST00000569761.1_1_15:75195123-75197568:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.24547187184993	2	487.245472	972.476391	1.5532	0.00075678	0.070724	3.446E-05	1.6239	0.00079124	487.24579747175704	24.984	0.072412	24.972	24.924	24.996	-0.012392	1326	43	0.8209676	0.025858998	0.81944823	333.48834	0	10.504303						86	4	2	NaN	NaN	NaN	0.060816	1	7524	7524		42.318	5.0152	1	10337			24596	5125	14197	14604	19552	19552					-0.010948329272878254
SPDFDNQTL	9	Unmodified	_SPDFDNQTL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7327286373501	2	518.732729	1035.4509	1.7704	0.00091838	3.043	0.0015785	4.8134	0.0024969	518.7337842861223	21.488	0.16865	21.488	21.368	21.537	0	1305	64	0.83389086	0.038761258	0.83389086	338.4505	0	15.731995						313	8	4	NaN	NaN	NaN	0.030669	1	9997	9997		58.235	18.777	1	64793			24597	5520	14198	14605	19553	19553					-0.06540307449699867
SPDFDNQTL	9	Unmodified	_SPDFDNQTL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4581808081	1	1036.45818	1035.4509	1.7138	0.0017762	7.8976	0.0081855	9.6114	0.0099618	1036.4660328941854	21.513	0.31332	21.513	21.392	21.705	0	207	85	1.496219	0.04969132	1.496219	303.63837	0	10.084198						456	14	2	NaN	NaN	NaN	0.010878	1	9998	9998		90.252	37.472	1	54870			24598	5520	14198	14605	19554	19554					-0.06540307449699867
SPDFDNQTL	9	Unmodified	_SPDFDNQTL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7327286373501	2	518.732729	1035.4509	1.5914	0.00082553	6.0671	0.0031472	7.6586	0.0039728	518.7358028433664	21.464	0.33707	21.45	21.33	21.667	-0.014006	1305	70	0.83389086	0.04245746	0.8323714	338.4505	0	17.232178						520	15	4	NaN	NaN	NaN	0.02857	1	9787	9787		60.982	11.02	1	101570			24599	5520	14198	14605	19555	19555					-0.06540307449699867
SPDGSDPKL	9	Unmodified	_SPDGSDPKL_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.22453946449997	2	458.224539	914.434526	1.361	0.00062363	-1.7153	-0.000786	-0.35436	-0.00016238	458.2238876811089	14.117	0.45621	14.117	13.997	14.453	0	1389	70	0.7821392	0.04256326	0.7821392	317.9967	0	17.305084						369	20	2	NaN	NaN	NaN	0.059222	1	6309	6309		42.995	12.385	1	70871			24600	1972	14199	14606	19556	19556					-0.026113886158100286
SPDGSDPKL	9	Unmodified	_SPDGSDPKL_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.22453946449997	2	458.224539	914.434526	1.0764	0.00049323	-1.7837	-0.00081734	-0.70733	-0.00032411	458.22355881564863	14.117	0.33546	14.106	14.01	14.346	-0.010672	1389	73	0.7821392	0.04441148	0.78061974	317.9967	0	18.056519						391	15	3	NaN	NaN	NaN	0.039271	1	6187	6187		51.467	33.233	1	67331			24601	1972	14199	14606	19557	19557					-0.026113886158100286
SPDHPVVL	8	Unmodified	_SPDHPVVL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;BANP|p.L102Pfs*27|1|0.1|ENSG00000172530|chr16:87984223-87984224|-/ACCTTTATCAGAAGTCACTGATG|frameshift_variant	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.2347102203	2	432.23471	862.454868	1.7744	0.00076696	-1.5505	-0.00067019	0.22388	9.677E-05	432.2341477729146	17.861	0.21586	17.861	17.813	18.029	0	1386	70	0.78399014	0.042591035	0.78399014	319.03336	0	17.331787						291	10	3	NaN	NaN	NaN	0.40747	1	5560	5560		36.036	10.285	1	42140			24602	4842	14200	14607	19558	19558					0.018138268346547193
SPDHPVVL	8	Unmodified	_SPDHPVVL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;BANP|p.L102Pfs*27|1|0.1|ENSG00000172530|chr16:87984223-87984224|-/ACCTTTATCAGAAGTCACTGATG|frameshift_variant	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2347102203	2	432.23471	862.454868	1.5898	0.00068718	-1.5065	-0.00065115	0.083368	3.6034E-05	432.2339907664584	17.906	0.23995	17.892	17.82	18.06	-0.013786	1386	55	0.78399014	0.033319414	0.7824707	319.03336	0	13.558838						276	11	3	NaN	NaN	NaN	0.30832	1	5423	5423		41.46	12.794	1	44104			24603	4842	14200	14607	19559	19559					0.018138268346547193
SPDIEDFSF	9	Unmodified	_SPDIEDFSF_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.4520327977	1	1056.45203	1055.44476	1.9017	0.002009	-1.3184	-0.0013928	0.58328	0.00061621	1056.450956881074	29.57	0.16891	29.57	29.522	29.691	0	183	43	1.510409	0.024821997	1.510409	306.44174	0	5.0360413						131	8	2	NaN	NaN	NaN	0.31737	1	10861	10861		17.799	5.2111	1	9417.8			24604	4757	14201	14608	19560	19560					-0.08074825681228504
SPDIEDFSF	9	Unmodified	_SPDIEDFSF_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.4520327977	1	1056.45203	1055.44476	1.4022	0.0014814	1.2329	0.0013024	2.6351	0.0027838	1056.4532875491564	29.593	0.16889	29.586	29.514	29.683	-0.0070667	183	46	1.510409	0.026593566	1.5088896	306.4417	0	5.3954773						152	8	3	NaN	NaN	NaN	0.21199	1	10630	10630		24.562	1.4444	1	10742			24605	4757	14201	14608	19561	19561					-0.08074825681228504
SPDIKDYKL	9	Unmodified	_SPDIKDYKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.79258923995	2	539.792589	1077.57063	1.9676	0.0010621	1.5969	0.000862	3.5645	0.0019241	539.792713180121	18.098	0.14405	18.084	18.036	18.18	-0.013786	1218	34	0.8873258	0.020237803	0.8858064	359.95334	0	8.209686						111	7	2	NaN	NaN	NaN	0.10945	1	11563	11563		34.454	15.29	1	10707			24606	2986	14202	14609	19562	19562					0.03494305894832905
SPDLAVVKK	9	Unmodified	_SPDLAVVKK_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.79239227470003	2	478.792392	955.570232	1.7252	0.00082601	-9.9169	-0.0047481	-8.1917	-0.0039221	478.78950007146653	55.701	0.19249	55.701	55.677	55.869	0	1338	40	0.81357855	0.02402109	0.81357855	330.56833	0	9.760101						325	9	6	NaN	NaN	NaN	0.66196	1	7243	7243		2.4615	1.0219	1	41037	+		24607	10803	14203	14610	19563	19563					0.09066930965661868
SPDLEGQHQF	10	Unmodified	_SPDLEGQHQF_					0	0	0			REV__ENST00000413133.6_1_8:38314980-38316493:-|nuORF	REV__ENST00000413133.6_1_8:38314980-38316493:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2647272575001	2	579.264727	1156.5149	2.3577	0.0013657	-4.7595	-0.002757	-2.4018	-0.0013913	579.2622514635332	21.826	0.28906	21.826	21.73	22.019	0	1188	103	0.90571284	0.06253624	0.90571284	367.09552	0	25.346619						743	13	5	NaN	NaN	NaN	0.44412	1	15030	15030		21.771	0	1	357820	+		24608	12073	14204	14611	19564	19564					-0.05709527292742678
SPDLGAVEL	9	Unmodified	_SPDLGAVEL_					0	0	0		nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	nc|ENSG00000123143|Q16512-3|PKN1	nc|ENSG00000123143|Q16512-3|PKN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4672889314	1	900.467289	899.460012	2.2719	0.0020458	1.0629	0.00095707	3.3348	0.0030029	900.4669659535393	26.167	0.28964	26.167	26.07	26.36	0	372	91	1.3983358	0.053524256	1.3983358	284.33762	0	10.883636						351	13	3	NaN	NaN	NaN	0.04947	1	6055	6055		47.136	14.683	1	44455			24609	2361	14205	14612	19565	19565					0.006260859066173907
SPDLGAVEL	9	Unmodified	_SPDLGAVEL_					0	0	0		nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	nc|ENSG00000123143|Q16512-3|PKN1	nc|ENSG00000123143|Q16512-3|PKN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4672889314	1	900.467289	899.460012	2.1295	0.0019176	1.7858	0.0016081	3.9153	0.0035256	900.4677836050287	26.167	0.24131	26.156	26.059	26.3	-0.011135	369	100	1.4001206	0.05889249	1.3986012	284.70056	0	11.975159						393	11	3	NaN	NaN	NaN	0.04947	1	5939	5939		47.136	12.697	1	46852			24610	2361	14205	14612	19566	19566					0.006260859066173907
SPDLYSLEL	9	Unmodified	_SPDLYSLEL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2;ENST00000417716.1_1_1:197191903-197192119:+|nuORF	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5197184324	1	1036.51972	1035.51244	1.9231	0.0019933	0.16282	0.00016877	2.0859	0.0021621	1036.5208556722403	30.149	0.16893	30.149	30.101	30.27	0	138	97	1.5369828	0.05668187	1.5369828	311.91064	0	11.502808						343	8	2	NaN	NaN	NaN	0.023828	1	10010	10010		67.154	20.018	1	55073			24611	5259	14206	14613	19567	19567					-0.003893757504329187
SPDLYSLEL	9	Unmodified	_SPDLYSLEL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2;ENST00000417716.1_1_1:197191903-197192119:+|nuORF	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5197184324	1	1036.51972	1035.51244	1.037	0.0010749	-0.85042	-0.00088148	0.1866	0.00019342	1036.519984524861	30.148	0.24127	30.142	30.07	30.311	-0.0064106	132	94	1.5405227	0.054895997	1.5390033	312.62903	0	11.140411						459	11	3	NaN	NaN	NaN	0.013281	1	9802	9802		82.96	30.336	1	59288			24612	5259	14206	14613	19568	19568					-0.003893757504329187
SPDNGEAIL	9	Unmodified	_SPDNGEAIL_					0	0	0		nc|ENSG00000181220|Q6NUN9-3|ZNF746;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	915.4418024624	1	915.441802	914.434526	1.6863	0.0015437	-0.44845	-0.00041053	1.2379	0.0011332	915.4411316680323	21.392	0.19269	21.392	21.344	21.537	0	387	61	1.389409	0.035720825	1.389409	282.45273	0	7.261688						280	9	3	NaN	NaN	NaN	0.017076	1	6310	6310		75.698	31.06	1	37152			24613	5218	14207	14614	19569	19569					-0.026113886158100286
SPDNGEAIL	9	Unmodified	_SPDNGEAIL_					0	0	0		nc|ENSG00000181220|Q6NUN9-3|ZNF746;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	nc|ENSG00000181220|Q6NUN9-3|ZNF746	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.4418024624	1	915.441802	914.434526	1.5807	0.001447	-0.030926	-2.8311E-05	1.5498	0.0014187	915.4414701226747	21.392	0.2166	21.378	21.306	21.523	-0.014006	384	55	1.3911947	0.032141924	1.3896753	282.81573	0	6.5341187						310	10	3	NaN	NaN	NaN	0.019103	1	6190	6190		73.133	43.535	1	37141			24614	5218	14207	14614	19570	19570					-0.026113886158100286
SPDNPSSAL	9	Unmodified	_SPDNPSSAL_					0	0	0		nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.410502334	1	887.410502	886.403226	2.1385	0.0018977	-0.25335	-0.00022483	1.8851	0.0016729	887.4096755900823	17.546	0.16784	17.532	17.508	17.676	-0.013567	414	40	1.3733286	0.02323699	1.3718091	279.31464	0	4.7261047						93	8	2	NaN	NaN	NaN	0.052553	1	5765	5765		45.827	2.8318	1	6549.1			24615	4592	14208	14615	19571	19571					-0.04451961649908753
SPDPSKHLL	9	Unmodified	_SPDPSKHLL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.27182400810005	2	497.271824	992.529095	1.6017	0.00079648	-2.8631	-0.0014237	-1.2614	-0.00062727	497.27051849779656	15.222	0.12011	15.222	15.174	15.294	0	1308	46	0.83204526	0.027692616	0.83204526	337.893	0	11.245941						88	6	2	NaN	NaN	NaN	0.33629	1	8321	8321		16.584	9.721	1	6319.6			24616	3833	14209	14616	19572	19572					0.03253169926199462
SPDPSKHLL	9	Unmodified						0	0	0		ENSG00000154237|ENST00000388948|LRRK1;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.271824	992.529095	1.6772	0.00083405	-2.5065	-0.0012464	-0.82923	-0.00041235	497.2707090431154	15.268	0.096071	15.256	15.208	15.304	-0.012202	1308	31	0.83204526	0.018456757	0.8305259	337.893		7.49527	0.017175	0.00027743	-0.00075972	NaN	16.584	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3924.2			24617	3833	14209	14616							0.03253169926199462
SPDPTRESVL	10	Unmodified	_SPDPTRESVL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7827528351501	2	550.782753	1099.55095	1.7795	0.00098013	-10.314	-0.005681	-8.5349	-0.0047009	550.7773249012547	17.813	0.1439	17.813	17.765	17.909	0	1278	76	0.85049206	0.046064615	0.85049206	344.92432	0	18.681885						220	7	2	NaN	NaN	NaN	0.38087	1	12826	12826		24.393	6.4237	1	35322			24618	4171	14210	14617	19573	19573					0.005159298840908377
SPDRDMSMAS	10	Unmodified	_SPDRDMSMAS_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1096.4397703268999	1	1096.43977	1095.43249	1.9503	0.0021384	-10.732	-0.011767	-8.7816	-0.0096285	1096.4300047271886	24.888	0.048252	24.888	24.84	24.888	0	105	40	1.5564433	0.022984266	1.5564433	315.63275	0	4.6610107						58	3	2	NaN	NaN	NaN	0.71559	1	12628	12628		6.9844	2.5713	1	3580.2			24619	2651	14211	14618	19574	19574					-0.11140508687572037
SPDSEITEL	9	Unmodified	_SPDSEITEL_					0	0	0		ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.462597484	1	990.462597	989.455321	2.0274	0.0020081	-1.4425	-0.0014287	0.58493	0.00057935	990.4612440767245	22.862	0.072309	22.848	22.824	22.896	-0.01354	288	43	1.4482387	0.024917006	1.4467193	294.08096	0	5.059662						79	4	2	NaN	NaN	NaN	0.04947	1	8017	8017		47.136	7.677	1	5720.8			24620	4806	14212	14619	19575	19575					-0.039828430268016746
SPDSEITEL	9	Unmodified						0	0	0		ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	ENSG00000171793|ENST00000650070|CTPS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	990.462597	989.455321	2.3902	0.0023674	-1.2998	-0.0012874	1.0904	0.00108	990.4619218306849	22.863	0.072412	22.863	22.838	22.911	0	291	40	1.446459	0.023138404	1.446459	293.71957		4.698517	0.0071486	6.4876E-05	-0.00013013	NaN	47.136	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5426.3			24621	4806	14212	14619							-0.039828430268016746
SPDSEVTSL	9	Unmodified	_SPDSEVTSL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4363827335002	1	934.436383	933.429106	1.9267	0.0018004	-0.32717	-0.00030572	1.5996	0.0014947	934.4362062651198	20.117	0.26435	20.117	20.069	20.333	0	360	100	1.405474	0.058911204	1.405474	285.63232	0	11.972443						495	12	4	NaN	NaN	NaN	0.01452	1	6679	6679		79.199	20.963	1	111000			24622	496	14213	14620	19576	19576					-0.04027112198264149
SPDSEVTSL	9	Unmodified	_SPDSEVTSL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.72182960005006	2	467.72183	933.429106	0.57252	0.00026778	-0.028972	-1.3551E-05	0.54355	0.00025423	467.72156286784866	20.116	0.21658	20.102	20.054	20.271	-0.014141	1368	40	0.7950918	0.024044454	0.79357237	323.16553	0	9.772919						122	10	2	NaN	NaN	NaN	0.23112	1	6535	6535		23.334	4.2161	1	15594			24623	496	14213	14620	19577	19577					-0.04027112198264149
SPDSEVTSL	9	Unmodified	_SPDSEVTSL_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4363827335002	1	934.436383	933.429106	1.8633	0.0017411	-0.16777	-0.00015677	1.6955	0.0015844	934.4367205146651	20.116	0.26472	20.102	20.054	20.319	-0.014141	357	94	1.407258	0.055334926	1.4057386	285.9949	0	11.245636						504	12	4	NaN	NaN	NaN	0.0018626	1	6536	6536		111.43	34.694	1	107340			24624	496	14213	14620	19578	19578					-0.04027112198264149
SPDSGVYEM	9	Unmodified	_SPDSGVYEM_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.3978887372	1	984.397889	983.390612	2.2203	0.0021856	-0.95474	-0.00093985	1.2655	0.0012458	984.3970970582837	20.165	0.26435	20.165	20.093	20.357	0	279	106	1.4535767	0.062309027	1.4535767	295.1899	0	12.6536255						864	12	4	NaN	NaN	NaN	0.025843	1	7987	7987		64.55	41.216	1	161670			24625	4878	14214	14621	19579	19579					-0.10174741104447094
SPDSGVYEM	9	Unmodified	_SPDSGVYEM_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.3978887372	1	984.397889	983.390612	2.0545	0.0020224	-0.51191	-0.00050392	1.5426	0.0015185	984.3976360092196	20.164	0.31301	20.15	20.102	20.415	-0.014143	276	103	1.4553556	0.060525537	1.4538362	295.55115	0	12.291443						833	14	4	NaN	NaN	NaN	0.0034808	1	7814	7814		106.56	64.773	1	154790			24626	4878	14214	14621	19580	19580					-0.10174741104447094
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(81)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.70003991295	2	500.70004	999.385527	1.7448	0.00087361	-1.2958	-0.00064879	0.44901	0.00022482	500.69940180524947	15.654	0.21605	15.654	15.606	15.822	0	1362	55	0.79879075	0.033279717	0.79879075	324.35794	0	13.513611						271	10	2	NaN	NaN	NaN	0.014046	1	8547	8547		80.639	46.2	1	37850			24627	4878	14214	14622	19581	19581		512			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(89)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.3928033593	1	1000.3928	999.385527	2.169	0.0021699	-1.4192	-0.0014197	0.74982	0.00075012	1000.391623774741	15.63	0.35996	15.63	15.582	15.942	0	273	121	1.4571344	0.07120657	1.4571344	295.84692	0	14.457336						904	16	4	NaN	NaN	NaN	0.011206	1	8548	8548		89.256	42.12	1	137600			24628	4878	14214	14622	19582	19582		512			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(65)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.70003991295	2	500.70004	999.385527	1.6565	0.00082943	-2.3322	-0.0011678	-0.67569	-0.00033832	500.6989503392497	15.628	0.28764	15.616	15.568	15.855	-0.012201	1359	52	0.8006399	0.03142917	0.7991205	325.10883	0	12.7621765						279	13	2	NaN	NaN	NaN	0.025843	1	8360	8360		64.55	34.952	1	45439			24629	4878	14214	14622	19583	19583		512			-0.11419044967067293
SPDSGVYEM	9	Oxidation (M)	_SPDSGVYEM(Oxidation (M))_		SPDSGVYEM(1)		SPDSGVYEM(160)	0	0	1		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.3928033593	1	1000.3928	999.385527	2.2687	0.0022696	-1.1053	-0.0011057	1.1634	0.0011639	1000.3918263143178	15.628	0.31156	15.616	15.568	15.879	-0.012201	273	118	1.4571344	0.06943011	1.4556149	295.84692	0	14.096649						841	14	4	NaN	NaN	NaN	6.3027E-18	1	8361	8361		158.11	102.62	1	133750			24630	4878	14214	14622	19584	19584		512			-0.11419044967067293
SPDSLAVSL	9	Unmodified	_SPDSLAVSL_					0	0	0		nc|ENSG00000211598|P06312|IGKV4-1	nc|ENSG00000211598|P06312|IGKV4-1	nc|ENSG00000211598|P06312|IGKV4-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4672889314	1	888.467289	887.460012	2.5261	0.0022444	-1.0164	-0.00090308	1.5097	0.0013413	888.4662066816819	25.684	0.16891	25.684	25.636	25.805	0	369	124	1.4001206	0.0732317	1.4001206	284.75858	0	14.893951						597	8	4	NaN	NaN	NaN	0.021105	1	5907	5907		70.6	12.001	1	145010			24631	8023	14215	14623	19585	19585					0.011780859066220728
SPDSLAVSL	9	Unmodified	_SPDSLAVSL_					0	0	0		nc|ENSG00000211598|P06312|IGKV4-1	nc|ENSG00000211598|P06312|IGKV4-1	nc|ENSG00000211598|P06312|IGKV4-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.4672889314	1	888.467289	887.460012	2.3548	0.0020922	-0.45582	-0.00040498	1.899	0.0016872	888.4668430369807	25.684	0.16889	25.672	25.624	25.793	-0.0116	366	136	1.4019053	0.08039343	1.4003859	285.12152	0	16.350525						537	8	5	NaN	NaN	NaN	0.043119	1	5785	5785		49.833	18.272	1	148960			24632	8023	14215	14623	19586	19586					0.011780859066220728
SPDTESPVL	9	Unmodified	_SPDTESPVL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4571181755999	1	944.457118	943.449842	1.4344	0.0013547	0.92846	0.00087689	2.3628	0.0022316	944.458408205994	20.814	0.21682	20.814	20.742	20.959	0	321	73	1.4286518	0.042764783	1.4286518	290.29788	0	8.689697						355	10	3	NaN	NaN	NaN	0.011942	1	6899	6899		87.021	37.188	1	52646			24633	886	14216	14624	19587	19587					-0.024145218186276907
SPDTESPVL	9	Unmodified	_SPDTESPVL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4571181755999	1	944.457118	943.449842	1.2075	0.0011404	0.99667	0.00094132	2.2041	0.0020817	944.4574779525861	20.791	0.24076	20.776	20.728	20.969	-0.014086	324	70	1.42687	0.040985107	1.4253505	289.93582	0	8.328064						355	11	3	NaN	NaN	NaN	0.0072287	1	6763	6763		98.041	39.442	1	52719			24634	886	14216	14624	19588	19588					-0.024145218186276907
SPDVNYEEL	9	Unmodified	_SPDVNYEEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4734965213	1	1065.4735	1064.46622	2.0274	0.0021601	-0.65638	-0.00069935	1.371	0.0014608	1065.472516456626	22.549	0.21703	22.549	22.477	22.694	0	195	82	1.5033154	0.047873378	1.5033154	304.9692	0	9.7118225						366	10	3	NaN	NaN	NaN	0.028569	1	11313	11313		60.984	20.83	1	38008			24635	4434	14217	14625	19589	19589					-0.06343440652517529
SPDVNYEEL	9	Unmodified	_SPDVNYEEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4734965213	1	1065.4735	1064.46622	1.2196	0.0012995	0.22708	0.00024195	1.4467	0.0015414	1065.4740783330124	22.548	0.21713	22.535	22.487	22.704	-0.01354	192	82	1.5050892	0.04786837	1.5035697	305.329	0	9.710785						369	10	3	NaN	NaN	NaN	0.017558	1	11051	11051		75.089	35.63	1	38113			24636	4434	14217	14625	19590	19590					-0.06343440652517529
SPEAQPKTL	9	Unmodified	_SPEAQPKTL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.7638318005	2	485.763832	969.513111	2.6405	0.0012827	-3.1661	-0.001538	-0.52564	-0.00025534	485.76227619466226	13.613	0.38428	13.613	13.541	13.925	0	1359	88	0.8006399	0.05358547	0.8006399	325.2448	0	21.768066						576	17	4	NaN	NaN	NaN	0.031551	1	7590	7590		57.081	35.246	1	181500			24637	4071	14218	14626	19591	19591					0.027134636892810704
SPEAQPKTL	9	Unmodified	_SPEAQPKTL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7638318005	2	485.763832	969.513111	1.7479	0.00084905	-1.0153	-0.00049319	0.73258	0.00035586	485.7632244468351	13.613	0.2877	13.603	13.531	13.819	-0.010098	1356	76	0.8024889	0.04620433	0.8009695	325.9959	0	18.769653						538	13	3	NaN	NaN	NaN	0.0032273	1	7449	7449		107.32	63.019	1	167060			24638	4071	14218	14626	19592	19592					0.027134636892810704
SPEAVGPEL	9	Unmodified	_SPEAVGPEL_					0	0	0		nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.4516388672001	1	898.451639	897.444362	1.5423	0.0013856	0.12707	0.00011417	1.6693	0.0014998	898.4524783335256	21.32	0.12031	21.32	21.272	21.392	0	471	58	1.3393306	0.034030676	1.3393306	272.3487	0	6.920044						134	6	2	NaN	NaN	NaN	0.0094682	1	6022	6022		93.472	37.978	1	12719			24639	4716	14219	14627	19593	19593					-0.008462006104196007
SPEAVGPEL	9	Unmodified	_SPEAVGPEL_					0	0	0		nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.4516388672001	1	898.451639	897.444362	1.2804	0.0011503	-0.16046	-0.00014416	1.1199	0.0010062	898.4516626860839	21.128	0.21667	21.114	21.065	21.282	-0.014004	417	94	1.3715409	0.055405736	1.3700215	278.8986	0	11.266571						299	10	3	NaN	NaN	NaN	0.030669	1	5908	5908		58.235	8.2742	1	39252			24640	4716	14219	14627	19594	19594					-0.008462006104196007
SPEAVGPEL	9	Unmodified	_SPEAVGPEL_					0	0	0		nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.4516388672001	1	898.451639	897.444362	1.4941	0.0013424	0.8077	0.00072568	2.3018	0.0020681	898.4523055700787	21.296	0.096186	21.282	21.258	21.354	-0.014006	465	55	1.3429124	0.032231092	1.341393	273.0771	0	6.554077						135	5	3	NaN	NaN	NaN	0.016254	1	5909	5909		76.739	40.153	1	11801			24641	4716	14219	14627	19595	19595					-0.008462006104196007
SPEDGIHEL	9	Unmodified	_SPEDGIHEL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.73527132629994	2	498.735271	995.45599	2.1659	0.0010802	-1.5769	-0.00078644	0.58902	0.00029377	498.73429553685094	18.125	0.16792	18.125	18.101	18.268	0	1314	49	0.8283535	0.0295372	0.8283535	336.38028	0	11.994537						212	8	3	NaN	NaN	NaN	0.27608	1	8396	8396		20.449	4.986	1	22921			24642	2021	14220	14628	19596	19596					-0.04192003587104409
SPEDGIHEL	9	Unmodified	_SPEDGIHEL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.73527132629994	2	498.735271	995.45599	1.7517	0.00087364	-1.5234	-0.00075978	0.22831	0.00011387	498.7340956061825	18.146	0.16792	18.132	18.108	18.276	-0.013948	1314	55	0.8283535	0.033232927	0.8268341	336.38025	0	13.495331						231	8	3	NaN	NaN	NaN	0.10956	1	8227	8227		34.439	15.32	1	26277			24643	2021	14220	14628	19597	19597					-0.04192003587104409
SPEDYYTSL	9	Unmodified	_SPEDYYTSL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.4625974839998	1	1074.4626	1073.45532	1.9273	0.0020709	-0.080974	-8.7004E-05	1.8464	0.0019839	1074.462487044707	23.73	0.33739	23.73	23.634	23.971	0	180	76	1.5121819	0.04432249	1.5121819	306.735	0	8.990509						520	15	4	NaN	NaN	NaN	0.014046	1	11688	11688		80.639	49.078	1	89860			24644	2057	14221	14629	19598	19598					-0.07846843026800343
SPEDYYTSL	9	Unmodified	_SPEDYYTSL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.4625974839998	1	1074.4626	1073.45532	1.9719	0.0021188	-0.42756	-0.00045939	1.5444	0.0016594	1074.4622509630733	23.73	0.31332	23.717	23.645	23.958	-0.013048	180	76	1.5121819	0.04432249	1.5106624	306.735	0	8.9904785						496	14	4	NaN	NaN	NaN	0.0040938	1	11387	11387		104.71	71.933	1	90130			24645	2057	14221	14629	19599	19599					-0.07846843026800343
SPEEERQSL	9	Unmodified	_SPEEERQSL_					0	0	0		ENST00000454762.1_1_6:43472456-43473590:+|nuORF;nc|ENSG00000137221|Q5JTD0-4|TJAP1;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1	ENST00000454762.1_1_6:43472456-43473590:+|nuORF	ENST00000454762.1_1_6:43472456-43473590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7567350499	2	537.756735	1073.49892	1.7614	0.00094722	-2.3236	-0.0012495	-0.56212	-0.00030229	537.7554052489776	13.252	0.1922	13.252	13.18	13.373	0	1284	43	0.8468043	0.025819898	0.8468043	343.53183	0	10.47464						153	9	2	NaN	NaN	NaN	0.077759	1	11695	11695		39.039	11.743	1	13428			24646	3077	14222	14630	19600	19600					-0.03489233529671765
SPEEERQSL	9	Unmodified	_SPEEERQSL_					0	0	0		ENST00000454762.1_1_6:43472456-43473590:+|nuORF;nc|ENSG00000137221|Q5JTD0-4|TJAP1;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1	ENST00000454762.1_1_6:43472456-43473590:+|nuORF	ENST00000454762.1_1_6:43472456-43473590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7567350499	2	537.756735	1073.49892	1.0543	0.00056694	0.79437	0.00042718	1.8486	0.00099412	537.7572279062334	13.206	0.11975	13.196	13.172	13.291	-0.010098	1284	40	0.8468043	0.0239743	0.8452849	343.5318	0	9.725891						111	6	2	NaN	NaN	NaN	0.077759	1	11393	11393		39.039	19.703	1	11015			24647	3077	14222	14630	19601	19601					-0.03489233529671765
SPEEIDAQL	9	Unmodified	_SPEEIDAQL_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2429291828999	2	501.242929	1000.47131	2.0022	0.0010036	-2.278	-0.0011418	-0.27582	-0.00013825	501.2418048153786	22.091	0.096512	22.091	22.043	22.139	0	1311	76	0.83019954	0.046174347	0.83019954	337.10684	0	18.74936						334	5	4	NaN	NaN	NaN	0.062072	1	8599	8599		41.785	18.45	1	125080			24648	1591	14223	14631	19602	19602					-0.02891136789912707
SPEEIDAQL	9	Unmodified	_SPEEIDAQL_					0	0	0		ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	ENSG00000106244|ENST00000350498|PDAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4785818991999	1	1001.47858	1000.47131	1.6771	0.0016796	-0.090097	-9.0231E-05	1.587	0.0015894	1001.4785341222191	22.091	0.1929	22.077	22.029	22.222	-0.013731	264	154	1.4624695	0.09067762	1.46095	296.92572	0	18.410309						677	9	4	NaN	NaN	NaN	8.9076E-05	1	8431	8431		123.58	56.423	1	165590			24649	1591	14223	14631	19603	19603					-0.02891136789912707
SPEEKQEML	9	Unmodified	_SPEEKQEML_					0	0	0		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7578891428501	2	545.757889	1089.50123	1.6996	0.00092757	-5.7957	-0.0031631	-4.0961	-0.0022355	545.7567403704788	15.246	0.31236	15.246	15.174	15.486	0	1254	112	0.8652351	0.06823462	0.8652351	350.94354	0	27.6763						684	14	3	NaN	NaN	NaN	0.0080618	1	12361	12361		96.341	43.561	1	165950			24650	545	14224	14632	19604	19604					-0.03994521116192118
SPEEKQEML	9	Unmodified	_SPEEKQEML_					0	0	0		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7578891428501	2	545.757889	1089.50123	1.671	0.00091197	-5.5343	-0.0030204	-3.8633	-0.0021084	545.7569390117179	15.244	0.26393	15.232	15.16	15.424	-0.012201	1251	112	0.8670771	0.06823462	0.8655577	351.69064	0	27.6763						604	12	3	NaN	NaN	NaN	0.014111	1	12055	12055		80.442	8.3657	1	149850			24651	545	14224	14632	19605	19605					-0.03994521116192118
SPEEKQEML	9	Oxidation (M)	_SPEEKQEM(Oxidation (M))L_		SPEEKQEM(1)L		SPEEKQEM(56)L	0	0	1		nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521335.1_1_8:54745492-54754250:-|nuORF	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	nc|ENSG00000047249|Q9UI12-2|ATP6V1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7553464539001	2	553.755346	1105.49614	1.5197	0.00084157	1.1191	0.00061972	2.6389	0.0014613	553.7563176862714	13.086	0.43143	13.076	12.98	13.412	-0.009469	1260	91	0.8615505	0.055274546	0.8600311	349.38586	0	22.415558						949	19	4	NaN	NaN	NaN	0.032409	1	12721	12721		55.958	15.952	1	253250			24652	545	14224	14633	19606	19606		53			-0.05238824978823686
SPEESSKAL	9	Unmodified	_SPEESSKAL_					0	0	0		nc|ENSG00000154059|Q9P2X3-2|IMPACT;ENSG00000154059|ENST00000284202|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.23764683974997	2	474.237647	946.460741	0.68887	0.00032669	-2.4284	-0.0011516	-1.7396	-0.00082496	474.23677698809274	12.75	0.16814	12.741	12.669	12.837	-0.00947	1380	31	0.7876915	0.018506765	0.78617203	320.09372	0	7.5205994						85	8	2	NaN	NaN	NaN	0.29341	1	6861	6861		19.336	5.2948	1	5641.5			24653	3825	14225	14634	19607	19607					-0.014631194443268214
SPEEVTELVL	10	Unmodified	_SPEEVTELVL_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1115.5830469706998	1	1115.58305	1114.57577	1.7551	0.0019579	0.452	0.00050425	2.2071	0.0024622	1115.5844660528962	29.136	0.072384	29.136	29.087	29.16	0	102	55	1.5582114	0.03182268	1.5582114	315.9237	0	6.4519653						129	4	3	NaN	NaN	NaN	0.2358	1	13464	13464		32.453	10.618	1	14047			24654	3421	14226	14635	19608	19608					0.023065649668069454
SPEEVTELVL	10	Unmodified	_SPEEVTELVL_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1115.5830469706998	1	1115.58305	1114.57577	1.1665	0.0013013	1.1368	0.0012682	2.3033	0.0025695	1115.5835966308218	29.135	0.072393	29.127	29.103	29.175	-0.0077229	102	58	1.5582114	0.03358531	1.556692	315.9237	0	6.809326						130	4	3	NaN	NaN	NaN	0.15427	1	13080	13080		39.459	10.563	1	11615			24655	3421	14226	14635	19609	19609					0.023065649668069454
SPEFGGGP	8	Unmodified	_SPEFGGGP_					0	0	0			REV__ENST00000312413.10_1_1:11900299-11900476:+|nuORF	REV__ENST00000312413.10_1_1:11900299-11900476:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	747.3307954500002	1	747.330795	746.323519	1.583	0.001183	-8.2695	-0.0061801	-6.6866	-0.0049971	747.3250956041069	28.436	0.14481	28.436	28.363	28.508	0	606	67	1.2585332	0.039604306	1.2585332	256.70007	0	8.078003						151	7	2	NaN	NaN	NaN	0.80071	1	3990	3990		9.1232	5.55	1	13171	+		24656	11695	14227	14636	19610	19610					-0.059789835332139774
SPEFGGGP	8	Unmodified						0	0	0			REV__ENST00000312413.10_1_1:11900299-11900476:+|nuORF	REV__ENST00000312413.10_1_1:11900299-11900476:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	747.330795	746.323519	1.583	0.001183	-8.2695	-0.0061801	-6.6866	-0.0049971	747.3250956041069	28.436	0.14481	28.436	28.363	28.508	0	606	67	1.2585332	0.039604306	1.2585332	256.70007		8.078003	0.0048218	-6.5768E-05	-0.00014014	NaN	9.1232	151	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13171	+		24657	11695	14227	14636							-0.059789835332139774
SPEGDKFM	8	Unmodified	_SPEGDKFM_					0	0	0			REV__ENSG00000212127|ENST00000537503|TAS2R14	REV__ENSG00000212127|ENST00000537503|TAS2R14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.3974948067001	1	910.397495	909.390218	2.342	0.0021322	-3.8708	-0.0035239	-1.5287	-0.0013918	910.3926946214502	26.022	0.1207	26.022	25.998	26.119	0	357	43	1.407258	0.024977922	1.407258	286.1048	0	5.078186						87	6	2	NaN	NaN	NaN	0.82797	1	6216	6216		5.4659	0	1	5574.2	+		24658	11278	14228	14637	19611	19611					-0.0681011603363686
SPEGDKFM	8	Unmodified						0	0	0			REV__ENSG00000212127|ENST00000537503|TAS2R14	REV__ENSG00000212127|ENST00000537503|TAS2R14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	910.397495	909.390218	2.342	0.0021322	-3.8708	-0.0035239	-1.5287	-0.0013918	910.3926946214502	26.022	0.1207	26.022	25.998	26.119	0	357	43	1.407258	0.024977922	1.407258	286.1048		5.078186	0	0	0	NaN	5.4659	87	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5574.2	+		24659	11278	14228	14637							-0.0681011603363686
SPEGLPAWVL	10	Unmodified	_SPEGLPAWVL_					0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7898495857501	2	534.78985	1067.56515	1.3336	0.00071322	-2.1484	-0.0011489	-0.81476	-0.00043573	534.7878762371732	33.045	0.072407	33.045	33.021	33.094	0	1284	46	0.8468043	0.027656734	0.8468043	343.556	0	11.220551						91	4	2	NaN	NaN	NaN	0.76548	1	11454	11454		3.5698	0.78459	1	6871			24660	3834	14229	14638	19612	19612					0.034066271030496864
SPEGLPAWVL	10	Unmodified						0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.78985	1067.56515	0.87259	0.00046665	-0.92045	-0.00049225	-0.047858	-2.5594E-05	534.7897596274596	33.044	0.12047	33.042	33.018	33.138	-0.0024757	1281	58	0.84864825	0.035031855	0.8471288	344.3041		14.2127075	-0.001871	0.00042698	0.00016227	NaN	3.5698	88	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6447.3			24661	3834	14229	14638							0.034066271030496864
SPENEEHIL	9	Unmodified	_SPENEEHIL_					0	0	0		ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENSG00000141564|ENST00000306801|RPTOR	ENSG00000141564|ENST00000306801|RPTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2538282202	2	534.253828	1066.4931	2.1418	0.0011443	-2.0785	-0.0011104	0.063325	3.3832E-05	534.2536319170038	17.237	0.19194	17.237	17.117	17.309	0	1290	70	0.84311575	0.042434454	0.84311575	342.0639	0	17.216248						231	9	3	NaN	NaN	NaN	0.071077	1	11395	11395		40.006	25.581	1	28453			24662	3334	14230	14639	19613	19613					-0.0374833204132301
SPENWLAVT	9	Unmodified	_SPENWLAVT_					0	0	0		ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENSG00000179532|ENST00000254579|DNHD1	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.7560067683999	2	508.756007	1015.49746	0.97965	0.0004984	-6.5505	-0.0033326	-5.5708	-0.0028342	508.7527672018174	13.206	0.16768	13.196	13.148	13.315	-0.010098	1305	64	0.83389086	0.038773835	0.8323714	338.53778	0	15.74118						236	8	2	NaN	NaN	NaN	0.19268	1	9011	9011		25.801	1.4007	1	30691			24663	268	14231	14640	19614	19614					-0.009668228277746493
SPEPGAVVL	9	Unmodified	_SPEPGAVVL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4774596872002	1	868.47746	867.470183	2.0846	0.0018104	-0.60781	-0.00052787	1.4768	0.0012825	868.4769496226958	23.369	0.16889	23.369	23.32	23.489	0	438	109	1.359022	0.06445527	1.359022	276.49707	0	13.113617						391	8	3	NaN	NaN	NaN	0.03623	1	5634	5634		52.758	8.4559	1	53591			24664	7969	14232	14641	19615	19615					0.031146936318691587
SPEPGAVVL	9	Unmodified	_SPEPGAVVL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4774596872002	1	868.47746	867.470183	1.6772	0.0014566	-0.29683	-0.00025779	1.3803	0.0011988	868.4770644382555	23.392	0.1448	23.379	23.331	23.476	-0.013296	435	100	1.360811	0.05908096	1.3592916	276.86105	0	12.020172						342	7	3	NaN	NaN	NaN	0.032764	1	5491	5491		55.494	29.379	1	47862			24665	7969	14232	14641	19616	19616					0.031146936318691587
SPEPGTSEL	9	Unmodified	_SPEPGTSEL_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4258180472001	1	916.425818	915.418542	2.2196	0.0020341	-0.558	-0.00051137	1.6616	0.0015227	916.4250523403858	17.837	0.19188	17.837	17.789	17.981	0	429	97	1.3643885	0.05719602	1.3643885	277.36188	0	11.627167						265	9	2	NaN	NaN	NaN	0.0040938	1	6323	6323		104.71	64.557	1	55436			24666	2527	14233	14642	19617	19617					-0.04255094852703678
SPEPGTSEL	9	Unmodified	_SPEPGTSEL_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4258180472001	1	916.425818	915.418542	2.0365	0.0018663	-0.91938	-0.00084254	1.1171	0.0010237	916.4252003560961	17.858	0.2639	17.844	17.772	18.036	-0.013786	429	109	1.3643885	0.0643456	1.362869	277.36188	0	13.080597						357	12	3	NaN	NaN	NaN	0.0072287	1	6203	6203		98.041	50.905	1	57521			24667	2527	14233	14642	19618	19618					-0.04255094852703678
SPEPLEAIL	9	Unmodified	_SPEPLEAIL_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5298891882002	1	968.529889	967.522613	1.8498	0.0017916	-0.4557	-0.00044136	1.3941	0.0013502	968.5293244310967	30.27	0.14478	30.27	30.222	30.366	0	297	61	1.4428991	0.035603285	1.4428991	293.08792	0	7.2318726						210	7	3	NaN	NaN	NaN	0.028349	1	7544	7544		61.271	30.48	1	25213			24668	2238	14234	14643	19619	19619					0.03755231974821527
SPEPLEAIL	9	Unmodified	_SPEPLEAIL_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.5298891882002	1	968.529889	967.522613	0.88058	0.00085287	0.73593	0.00071277	1.6165	0.0015656	968.5307631941644	30.269	0.14475	30.263	30.214	30.359	-0.0064106	297	58	1.4428991	0.033821344	1.4413797	293.08792	0	6.869934						191	7	3	NaN	NaN	NaN	0.028349	1	7399	7399		61.271	31.236	1	21782			24669	2238	14234	14643	19620	19620					0.03755231974821527
SPEPLQALL	9	Unmodified	_SPEPLQALL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.5458736034001	1	967.545874	966.538597	1.9948	0.00193	-0.34662	-0.00033537	1.6482	0.0015947	967.5449642336199	30.125	0.1207	30.125	30.077	30.198	0	279	67	1.4535767	0.03913033	1.4535767	295.26102	0	7.9484253						154	6	2	NaN	NaN	NaN	0.032826	1	7526	7526		55.413	0	1	28075			24670	5429	14235	14644	19621	19621					0.05398938211715176
SPEPLQALL	9	Unmodified	_SPEPLQALL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5458736034001	1	967.545874	966.538597	0.89684	0.00086773	-0.80091	-0.00077491	0.09593	9.2817E-05	967.5450017224948	30.124	0.12064	30.118	30.07	30.19	-0.0064106	279	79	1.4535767	0.046230197	1.4520572	295.26102	0	9.390625						209	6	3	NaN	NaN	NaN	0.077759	1	7380	7380		39.039	9.0037	1	25840			24671	5429	14235	14644	19622	19622					0.05398938211715176
SPEPSPVTL	9	Unmodified	_SPEPSPVTL_					0	0	0		BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.4829389956002	1	926.482939	925.475663	2.1137	0.0019583	-1.1711	-0.001085	0.94262	0.00087332	926.4810960131035	22.573	0.16882	22.573	22.501	22.67	0	330	97	1.4233059	0.057074428	1.4233059	289.29242	0	11.600586						336	8	2	NaN	NaN	NaN	0.00017726	1	6503	6503		118.2	59.605	1	61257			24672	63	14236	14645	19623	19623					0.00994372423679124
SPEPSPVTL	9	Unmodified	_SPEPSPVTL_					0	0	0		BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.4829389956002	1	926.482939	925.475663	0.95195	0.00088196	0.6128	0.00056775	1.5647	0.0014497	926.4836899193577	22.573	0.14472	22.559	22.511	22.655	-0.01354	330	103	1.4233059	0.06063509	1.4217864	289.29242	0	12.32431						384	7	3	NaN	NaN	NaN	0.0018626	1	6375	6375		111.43	40.833	1	59045			24673	63	14236	14645	19624	19624					0.00994372423679124
SPEYFEPIL	9	Unmodified	_SPEYFEPIL_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9;ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000434597.2_1_9:37477166-37477928:+|nuORF	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5404538745	1	1094.54045	1093.53318	1.9855	0.0021732	-0.51521	-0.00056392	1.4702	0.0016092	1094.5402780355168	30.68	0.096548	30.68	30.608	30.704	0	81	166	1.5705823	0.0972929	1.5705823	318.50684	0	19.73053						612	5	5	NaN	NaN	NaN	0.00020136	1	12545	12545		116.74	54.759	1	388610			24674	1490	14237	14646	19625	19625					-0.00984785370769714
SPEYFEPIL	9	Unmodified	_SPEYFEPIL_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9;ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000434597.2_1_9:37477166-37477928:+|nuORF	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5404538745	1	1094.54045	1093.53318	1.8199	0.001992	-0.36537	-0.00039991	1.4546	0.0015921	1094.5405531898093	30.679	0.096542	30.673	30.601	30.698	-0.0057545	78	154	1.5723488	0.090188384	1.5708294	318.86508	0	18.289795						632	5	5	NaN	NaN	NaN	1.2958E-07	1	12225	12225		136.74	83.981	1	417920			24675	1490	14237	14646	19626	19626					-0.00984785370769714
SPFDDFLL	8	Unmodified	_SPFDDFLL_					0	0	0		ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000571227.5_1_16:4438053-4465766:-|nuORF	ENSG00000262246|ENST00000251166|CORO7	ENSG00000262246|ENST00000251166|CORO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.461475272	1	953.461475	952.454199	0.72537	0.00069161	-0.39165	-0.00037342	0.33372	0.00031819	953.4608224310273	35.313	0.096485	35.313	35.289	35.385	0	276	43	1.4553556	0.024906397	1.4553556	295.6838	0	5.060211						83	5	2	NaN	NaN	NaN	0.40747	1	7143	7143		36.036	12.186	1	6715.8			24676	6151	14238	14647	19627	19627					-0.023930126050458966
SPFDDFLL	8	Unmodified						0	0	0		ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000571227.5_1_16:4438053-4465766:-|nuORF	ENSG00000262246|ENST00000251166|CORO7	ENSG00000262246|ENST00000251166|CORO7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	953.461475	952.454199	1.2774	0.001218	0.97226	0.00092701	2.2497	0.002145	953.4614613019685	35.312	0.072479	35.312	35.287	35.36	-4.5776E-05	276	49	1.4553556	0.028461456	1.4538362	295.6838		5.782501	-0.00072452	0.00085857	-0.00075972	NaN	36.036	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5831.7			24677	6151	14238	14647							-0.023930126050458966
SPFEFGFTF	9	Unmodified	_SPFEFGFTF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.4880243735	1	1078.48802	1077.48075	0.99978	0.0010782	1.5897	0.0017144	2.5894	0.0027927	1078.4891718446722	35.578	0.21704	35.578	35.53	35.747	0	132	100	1.5405227	0.058400393	1.5405227	312.4689	0	11.84552						490	10	4	NaN	NaN	NaN	0.036546	1	11852	11852		52.624	29.29	1	88462			24678	1584	14239	14648	19628	19628					-0.05489323713709382
SPFEFGFTF	9	Unmodified	_SPFEFGFTF_					0	0	0		ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	ENST00000526843.2_1_11:127810983-127811547:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.4880243735	1	1078.48802	1077.48075	1.2649	0.0013642	1.2598	0.0013587	2.5247	0.0027229	1078.4897287618116	35.577	0.2411	35.577	35.553	35.794	0.00052643	129	103	1.5422925	0.06018603	1.540773	312.82785	0	12.207733						492	11	4	NaN	NaN	NaN	0.0023856	1	11543	11543		109.86	51.622	1	91085			24679	1584	14239	14648	19629	19629					-0.05489323713709382
SPFFTVEFPPI	11	Unmodified	_SPFFTVEFPPI_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8317144004502	2	640.831714	1279.64888	1.7673	0.0011325	-11.717	-0.0075085	-9.9494	-0.0063759	640.8257555731385	23.899	0.16883	23.899	23.875	24.044	0	1128	70	0.9424274	0.04218763	0.9424274	381.54294	0	17.079712						219	8	3	NaN	NaN	NaN	0.66717	1	18418	18418		9.6116	0.64966	1	20906			24680	13681	14240	14649	19630	19630					0.02023738480124848
SPFKADIEM	9	Unmodified	_SPFKADIEM_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2522426589501	2	519.252243	1036.48993	1.3759	0.00071442	-0.93016	-0.00048299	0.44571	0.00023144	519.2517519240898	21.705	0.1685	21.691	21.643	21.812	-0.013897	1314	52	0.8283535	0.03137821	0.8268341	336.19867	0	12.73526						180	8	3	NaN	NaN	NaN	0.29341	1	9846	9846		19.336	0.17285	1	30750			24681	2992	14241	14650	19631	19631					-0.02685298419692117
SPFPTSTPL	9	Unmodified	_SPFPTSTPL_					0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4880243735	1	946.488024	945.480748	1.8086	0.0017118	-1.8264	-0.0017287	-0.017848	-1.6893E-05	946.4860738038716	25.274	0.072403	25.274	25.25	25.322	0	276	94	1.4553556	0.05518806	1.4553556	295.7149	0	11.213715						105	4	2	NaN	NaN	NaN	0.060816	1	6958	6958		42.318	7.8788	1	8437			24682	103	14242	14651	19632	19632					0.0058267628628527746
SPFPTSTPL	9	Unmodified						0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	946.488024	945.480748	1.949	0.0018447	3.5665	0.0033757	5.5155	0.0052203	946.4920565110615	25.274	0.072334	25.262	25.238	25.31	-0.012011	273	121	1.4571344	0.07123697	1.4556149	296.0763		14.47467	-0.0061395	0.0037315	0.00012965	NaN	42.318	122	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8919.1			24683	103	14242	14651							0.0058267628628527746
SPFRFEISF	9	Unmodified	_SPFRFEISF_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.2874740723	2	565.287474	1128.5604	1.8995	0.0010738	1.7771	0.0010046	3.6766	0.0020784	565.2892713727242	29.401	0.24132	29.401	29.329	29.57	0	1245	76	0.87076044	0.046014845	0.87076044	353.03192	0	18.655762						420	11	3	NaN	NaN	NaN	0.028404	1	14029	14029		61.199	32.303	1	171070			24684	1509	14243	14652	19633	19633					0.001257429602674165
SPFRFEISF	9	Unmodified	_SPFRFEISF_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2874740723	2	565.287474	1128.5604	1.2818	0.00072459	1.421	0.00080327	2.7028	0.0015279	565.2890348361119	29.424	0.1689	29.417	29.368	29.537	-0.0077209	1242	73	0.87260187	0.044176638	0.8710824	353.77847	0	17.910492						392	8	4	NaN	NaN	NaN	0.022185	1	13586	13586		69.233	26.915	1	152440			24685	1509	14243	14652	19634	19634					0.001257429602674165
SPFYYDWHSL	10	Unmodified	_SPFYYDWHSL_					0	0	0		ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	ENSG00000089356|ENST00000604404|FXYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.7931205562	2	657.793121	1313.57169	1.168	0.00076831	-0.24227	-0.00015936	0.92575	0.00060895	657.7930785136091	27.446	0.12071	27.446	27.374	27.495	0	1113	58	0.9515937	0.034828126	0.9515937	385.1476	0	14.096313						120	6	2	NaN	NaN	NaN	0.19179	1	19005	19005		36.235	25.875	1	22739			24686	1038	14244	14653	19635	19635					-0.07255479736249981
SPGADLLQVL	10	Unmodified	_SPGADLLQVL_					0	0	0		ENST00000530329.1_1_11:61112942-61113484:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	ENST00000530329.1_1_11:61112942-61113484:+|nuORF	ENST00000530329.1_1_11:61112942-61113484:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7873068968	2	506.787307	1011.56006	1.3054	0.00066154	7.9906	0.0040495	9.296	0.0047111	507.29268916006856	19.418	0.19233	19.404	19.308	19.5	-0.014141	1311	46	0.83019954	0.027683675	0.8286801	337.05667	0	11.23941						192	9	4	NaN	NaN	NaN	0.24484	1	8889	8889		31.675	0.4774	1	32027			24687	3678	14245	14654	19636	19636					0.05474323240423473
SPGADLLQVL	10	Unmodified						0	0	0		ENST00000530329.1_1_11:61112942-61113484:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	ENST00000530329.1_1_11:61112942-61113484:+|nuORF	ENST00000530329.1_1_11:61112942-61113484:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.787307	1011.56006	1.8207	0.00092269	11.136	0.0056436	12.957	0.0065663	506.7933515052108	19.372	0.11997	19.372	19.372	19.492	0	1308	73	0.83204526	0.044272304	0.83204526	337.80603		17.974304	-0.016032	0.0025934	0.0016826	NaN	31.675	190	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34368			24688	3678	14245	14654							0.05474323240423473
SPGGGGGGA	9	Unmodified	_SPGGGGGGA_					0	0	0		nc|ENSG00000120458|Q6P1R3-3|MSANTD2;ENSG00000120458|ENST00000374979|MSANTD2	nc|ENSG00000120458|Q6P1R3-3|MSANTD2	nc|ENSG00000120458|Q6P1R3-3|MSANTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.2685295442	1	616.26853	615.261253	0.30023	0.00018502	-3.3043	-0.0020363	-3.0041	-0.0018513	616.2662250474286	37.843	0.096199	37.843	37.771	37.867	0	720	43	1.1900014	0.025300026	1.1900014	243.65248	0	5.1801605						96	5	2	NaN	NaN	NaN	0.6907	1	1013	1013		0	0	1	7488.2			24689	2262	14246	14655	19637	19637					-0.06176709881572151
SPGGPALL	8	Unmodified	_SPGGPALL_					0	0	0			REV__ENST00000578287.1_1_17:80350276-80350759:-|nuORF	REV__ENST00000578287.1_1_17:80350276-80350759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.4035664626	1	711.403566	710.39629	0.83412	0.0005934	7.8289	0.0055695	8.663	0.0061629	711.4091804309039	32.032	0.072384	32.032	32.008	32.08	0	633	43	1.2423272	0.025221586	1.2423272	253.62555	0	5.1490784						68	4	2	NaN	NaN	NaN	0.84692	1	3439	3439		1.4396	0	1	5333.1	+		24690	12856	14247	14656	19638	19638					0.029507702601790697
SPGHGAGL	8	Unmodified	_SPGHGAGL_					0	0	0		chr11:65172001-65172246|145|15.74|0.43|5.19|+|2|SPDYC,SPDYC|2	chr11:65172001-65172246|145|15.74|0.43|5.19|+|2|SPDYC,SPDYC|2	chr11:65172001-65172246|145|15.74|0.43|5.19|+|2|SPDYC,SPDYC|2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3471142162001	1	695.347114	694.339838	0.82298	0.00057226	-5.978	-0.0041568	-5.155	-0.0035845	695.3431468287017	28.749	0.14477	28.74	28.692	28.837	-0.0083504	585	130	1.2711272	0.07742095	1.2696078	259.61874	0	15.812668						309	7	3	NaN	NaN	NaN	0.8439	1	3054	3054		3.1533	0	1	32005			24691	119	14248	14657	19639	19639					-0.01955857576467679
SPGPDGVL	8	Unmodified	_SPGPDGVL_					0	0	0			REV__ENSG00000196155|ENST00000379344|PLEKHG4	REV__ENSG00000196155|ENST00000379344|PLEKHG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3777456426002	1	741.377746	740.370469	1.3319	0.00098747	5.1524	0.0038199	6.4844	0.0048074	741.3812225780321	24.743	0.16891	24.743	24.695	24.864	0	555	52	1.2891023	0.030539632	1.2891023	262.97324	0	6.2299805						149	8	2	NaN	NaN	NaN	0.82332	1	3915	3915		6.0903	0	1	12805	+		24692	11088	14249	14658	19640	19640					-0.010101239820755836
SPGPGLGG	8	Unmodified	_SPGPGLGG_					0	0	0		ENST00000379359.3_1_13:42031701-42032475:+|nuORF	ENST00000379359.3_1_13:42031701-42032475:+|nuORF	ENST00000379359.3_1_13:42031701-42032475:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3253161416002	1	641.325316	640.31804	2.1656	0.0013888	-1.4246	-0.00091364	0.74095	0.00047519	641.3253111862359	25.539	0.096445	25.539	25.515	25.612	0	1143	64	0.9332562	0.0385108	0.9332562	190.9216	0	7.8783875						93	5	2	NaN	NaN	NaN	0.84887	1	1738	1738		0.32989	0	1	9157.4			24693	6720	14250	14659	19641	19641					-0.016506623250393204
SPHDISNVL	9	Unmodified	_SPHDISNVL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.25363125495	2	491.253631	980.49271	1.2787	0.00062817	-1.1552	-0.00056748	0.12354	6.069E-05	491.25338152400576	19.683	0.096241	19.669	19.621	19.717	-0.014141	1338	43	0.81357855	0.02586186	0.8120591	330.4491	0	10.504242						85	5	2	NaN	NaN	NaN	0.39244	1	7730	7730		14.042	4.9184	1	6951.4			24694	5195	14251	14660	19642	19642					0.0016829302946916869
SPHDISNVL	9	Unmodified						0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	491.253631	980.49271	1.8499	0.00090879	-2.8809	-0.0014153	-1.031	-0.00050647	491.2520489885335	19.66	0.048031	19.66	19.636	19.684	0	1332	85	0.8172735	0.0516901	0.8172735	331.9499		20.994843	-0.0044029	-0.00093874	0.0026072	NaN	14.042	100	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8474.7			24695	5195	14251	14660							0.0016829302946916869
SPHGGALV	8	Unmodified	_SPHGGALV_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088	1	737.394064	736.386788	1.1807	0.00087066	-4.0068	-0.0029546	-2.826	-0.0020839	737.391436579501	30.414	0.21716	30.407	30.359	30.576	-0.0064106	555	94	1.2891023	0.055725694	1.2875829	262.99915	0	11.369003						292	10	2	NaN	NaN	NaN	0.82332	1	3781	3781		6.0903	0	1	52825			24696	4351	14252	14661	19643	19643					0.008050019746519865
SPHYQEWIL	9	Unmodified	_SPHYQEWIL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.790380902	2	586.790381	1171.56621	2.0975	0.0012308	-0.43948	-0.00025788	1.658	0.0009729	586.7903124585631	25.491	0.1689	25.479	25.382	25.551	-0.012011	1188	100	0.90571284	0.060673952	0.9041934	367.03992	0	24.588104						449	8	3	NaN	NaN	NaN	0.10363	1	14993	14993		35.296	5.6982	1	175550			24697	3344	14253	14662	19644	19644					-0.01271158528061278
SPIGDDVQL	9	Unmodified	_SPIGDDVQL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.2401895287	2	472.24019	942.465826	1.3114	0.00061931	-1.1583	-0.000547	0.15313	7.2314E-05	472.23930710477174	23.827	0.096323	23.827	23.803	23.899	0	1305	79	0.83389086	0.04802394	0.83389086	338.88828	0	19.516632						123	5	2	NaN	NaN	NaN	0.20577	1	6867	6867		24.961	4.5124	1	13937			24698	1279	14254	14663	19645	19645					-0.007708155817113038
SPIGDDVQL	9	Unmodified	_SPIGDDVQL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4731025908001	1	943.473103	942.465826	1.8395	0.0017355	-0.1055	-9.9534E-05	1.734	0.001636	943.4729551938385	23.827	0.19276	23.827	23.754	23.947	0	336	106	1.419741	0.062408447	1.419741	288.49158	0	12.681427						452	9	3	NaN	NaN	NaN	0.010878	1	6868	6868		90.252	37.628	1	121840			24699	1279	14254	14663	19646	19646					-0.007708155817113038
SPIGDDVQL	9	Unmodified	_SPIGDDVQL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.2401895287	2	472.24019	942.465826	0.58386	0.00027572	-0.45837	-0.00021646	0.12549	5.926E-05	472.24006701154997	23.826	0.14461	23.813	23.789	23.934	-0.013048	1308	88	0.83204526	0.053573847	0.8305259	338.13824	0	21.772095						127	7	2	NaN	NaN	NaN	0.45297	1	6730	6730		11.548	0.94349	1	13810			24700	1279	14254	14663	19647	19647					-0.007708155817113038
SPIGDDVQL	9	Unmodified	_SPIGDDVQL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4731025908001	1	943.473103	942.465826	2.0451	0.0019295	-0.089051	-8.4017E-05	1.956	0.0018454	943.4729297718868	23.826	0.2411	23.813	23.741	23.982	-0.013048	333	100	1.4215236	0.058835983	1.4200041	288.8538	0	11.955505						404	11	3	NaN	NaN	NaN	0.0073225	1	6732	6732		97.85	42.356	1	121040			24701	1279	14254	14663	19648	19648					-0.007708155817113038
SPIPMETEL	9	Unmodified	_SPIPMETEL_					0	0	0		nc|ENSG00000189308|Q6MZP7-5|LIN54;LIN54-SEC31A|10|fusion;nc|ENSG00000189308|Q6MZP7-2|LIN54;ENSG00000189308|ENST00000340417|LIN54;LIN54-SEC31A|8|fusion;LIN54-SEC31A|7|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion	nc|ENSG00000189308|Q6MZP7-5|LIN54	nc|ENSG00000189308|Q6MZP7-5|LIN54	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4968745002999	1	1016.49687	1015.4896	2.3101	0.0023483	3.3896	0.0034455	5.6998	0.0057938	1016.4976686525376	26.143	0.12069	26.131	26.107	26.228	-0.011137	234	88	1.4802408	0.051506996	1.4787214	300.47345	0	10.455383						277	6	4	NaN	NaN	NaN	0.042816	1	9012	9012		49.961	13.375	1	22853			24702	5591	14255	14664	19649	19649					-0.017527181395621483
SPIPMETEL	9	Unmodified						0	0	0		nc|ENSG00000189308|Q6MZP7-5|LIN54;LIN54-SEC31A|10|fusion;nc|ENSG00000189308|Q6MZP7-2|LIN54;ENSG00000189308|ENST00000340417|LIN54;LIN54-SEC31A|8|fusion;LIN54-SEC31A|7|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion	nc|ENSG00000189308|Q6MZP7-5|LIN54	nc|ENSG00000189308|Q6MZP7-5|LIN54	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.49687	1015.4896	2.7169	0.0027617	3.8971	0.0039614	6.614	0.0067231	1016.4998397714737	26.119	0.096548	26.119	26.094	26.191	0	240	142	1.4766881	0.08341491	1.4766881	299.75226		16.932373	-0.0063795	0.00025971	-0.0010167	NaN	49.961	277	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24631			24703	5591	14255	14664							-0.017527181395621483
SPIQAEQEL	9	Unmodified	_SPIQAEQEL_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5102163785999	1	1014.51022	1013.50294	1.7752	0.001801	0.054405	5.5194E-05	1.8296	0.0018562	1014.509439153214	20.477	0.096142	20.477	20.453	20.549	0	234	61	1.4802408	0.035527706	1.4802408	300.48135	0	7.2119446						113	5	2	NaN	NaN	NaN	0.19455	1	9122	9122		25.681	11.256	1	8482.3			24704	1746	14256	14665	19650	19650					-0.00327144035964011
SPIQAEQEL	9	Unmodified	_SPIQAEQEL_					0	0	0		nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	nc|ENSG00000110013|Q9HAT2-2|SIAE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5102163785999	1	1014.51022	1013.50294	1.8149	0.0018412	-0.025188	-2.5554E-05	1.7897	0.0018156	1014.5104592475889	20.501	0.096195	20.487	20.439	20.535	-0.014143	234	61	1.4802408	0.0355314	1.4787214	300.48135	0	7.2127075						105	5	2	NaN	NaN	NaN	0.028117	1	8944	8944		61.575	22.536	1	7369.4			24705	1746	14256	14665	19651	19651					-0.00327144035964011
SPIQDVAITL	10	Unmodified	_SPIQDVAITL_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5935520775	1	1056.59355	1055.58628	1.3399	0.0014158	-0.97348	-0.0010286	0.36646	0.0003872	1056.5941345215222	29.183	0.14482	29.175	29.103	29.248	-0.0077209	135	70	1.5387528	0.040720582	1.5372335	312.19177	0	8.261658						246	7	4	NaN	NaN	NaN	0.038721	1	10686	10686		55.958	19.723	1	26809			24706	4318	14257	14666	19652	19652					0.06070592411901998
SPIQDVAITL	10	Unmodified						0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1056.59355	1055.58628	1.8503	0.001955	-1.3029	-0.0013766	0.5474	0.00057838	1057.5946933165837	29.184	0.16894	29.184	29.087	29.256	0	135	64	1.5387528	0.03717172	1.5387528	312.19177		7.541626	0.0042565	-0.00020012	0.00075972	NaN	55.958	261	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30845			24707	4318	14257	14666							0.06070592411901998
SPISAQDLL	9	Unmodified	_SPISAQDLL_					0	0	0		ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.25838228184995	2	472.258382	942.502212	1.3624	0.00064339	-2.9492	-0.0013928	-1.5868	-0.00074939	472.25694981773523	26.553	0.072414	26.553	26.529	26.601	0	1344	52	0.8098828	0.03140533	0.8098828	329.13138	0	12.762939						98	4	3	NaN	NaN	NaN	0.089764	1	6877	6877		37.302	4.8496	1	9540.5			24708	4718	14258	14667	19653	19653					0.028660613149895653
SPISAQDLL	9	Unmodified	_SPISAQDLL_					0	0	0		ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.25838228184995	2	472.258382	942.502212	0.34357	0.00016226	-2.3795	-0.0011237	-2.0359	-0.00096147	472.25711091458624	26.577	0.072372	26.566	26.542	26.614	-0.010645	1341	55	0.8117308	0.033243716	0.81021136	329.88235	0	13.51004						74	4	2	NaN	NaN	NaN	0.089764	1	6740	6740		37.302	2.0059	1	8086.8			24709	4718	14258	14667	19654	19654					0.028660613149895653
SPISAQDLL	9	Unmodified	_SPISAQDLL_					0	0	0		ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant;nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	ZNF282|p.S328F|1|0.29|ENSG00000170265|chr7:149212388-149212388|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971	1	943.509488	942.502212	1.437	0.0013558	-1.3667	-0.0012895	0.070279	6.6309E-05	943.5088650570938	26.577	0.096527	26.566	26.542	26.639	-0.010645	279	82	1.4535767	0.04805672	1.4520572	295.36682	0	9.765137						187	5	3	NaN	NaN	NaN	0.054111	1	6745	6745		45.165	12.712	1	26648			24710	4718	14258	14667	19655	19655					0.028660613149895653
SPISKTFEL	9	Unmodified	_SPISKTFEL_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.28185737815005	2	511.281857	1020.54916	1.948	0.000996	-3.4479	-0.0017629	-1.4999	-0.00076685	511.2799953555009	22.525	0.12052	22.525	22.477	22.597	0	1281	61	0.84864825	0.036889493	0.84864825	344.5061	0	14.975189						156	6	4	NaN	NaN	NaN	0.045904	1	9392	9392		48.65	10.519	1	22491			24711	1593	14259	14668	19656	19656					0.03970920866152028
SPISKTFEL	9	Unmodified						0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.281857	1020.54916	1.0506	0.00053717	-3.3007	-0.0016876	-2.25	-0.0011504	511.279663737747	22.548	0.12059	22.535	22.511	22.631	-0.01354	1284	61	0.8468043	0.036889493	0.8452849	343.75754		14.975189	0.0049852	7.384E-05	-0.0016817	NaN	48.65	153	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24158			24712	1593	14259	14668							0.03970920866152028
SPISSDQSL	9	Unmodified	_SPISSDQSL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4523671487001	1	933.452367	932.445091	2.2562	0.002106	1.1337	0.0010582	3.3898	0.0031643	933.4534156808317	18.7	0.11994	18.7	18.676	18.796	0	351	52	1.4108255	0.030322313	1.4108255	286.7243	0	6.162445						154	6	2	NaN	NaN	NaN	0.030545	1	6655	6655		58.398	17.441	1	14806			24713	2467	14260	14669	19657	19657					-0.023834059613704994
SPISSDQSL	9	Unmodified	_SPISSDQSL_					0	0	0		ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4523671487001	1	933.452367	932.445091	1.9356	0.0018067	-0.41551	-0.00038786	1.52	0.0014189	933.4519679993135	18.722	0.095982	18.708	18.684	18.78	-0.014059	351	52	1.4108255	0.030319095	1.409306	286.7243	0	6.161804						100	5	2	NaN	NaN	NaN	0.021751	1	6511	6511		69.782	19.821	1	10784			24714	2467	14260	14669	19658	19658					-0.023834059613704994
SPKRKAKIGQS	11	Unmodified	_SPKRKAKIGQS_					0	0	0			REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.5788112807667	3	400.578811	1198.7146	0.95077	0.00038086	3.8428	0.0015394	4.7936	0.0019202	400.5802890438503	40.198	0.096085	40.204	40.18	40.276	0.0060501	1434	52	0.75435036	0.031517863	0.7528309	458.42523	0	19.153687						145	5	2	NaN	NaN	NaN	0.76251	1	15790	15790		3.3044	1.4542	1	19815	+		24715	10250	14261	14670	19659	19659					0.12319572445653648
SPKSMQGRWI	10	Unmodified	_SPKSMQGRWI_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0|TMEM44	REV__nc|ENSG00000145014|Q2T9K0|TMEM44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3109575561001	2	595.310958	1188.60736	0.22402	0.00013336	-7.4464	-0.0044329	-7.2224	-0.0042996	595.3067066026892	31.741	0.096586	31.737	31.712	31.809	-0.0044155	1197	73	0.9001988	0.044105053	0.8986794	364.74454	0	17.870605						176	5	3	NaN	NaN	NaN	0.75466	1	15509	15509		4.3102	0	1	15530	+		24716	13135	14262	14671	19660	19660					0.02060279239776719
SPLAGHAG	8	Unmodified	_SPLAGHAG_					0	0	0			REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804	1	709.362764	708.355488	1.6569	0.0011754	8.0806	0.0057321	9.7376	0.0069075	709.3708208528166	26.191	0.072386	26.191	26.167	26.239	0	618	52	1.2513325	0.030611515	1.2513325	255.47794	0	6.2498016						88	4	3	NaN	NaN	NaN	0.84692	1	3392	3392		1.4396	1.0439	1	9132.6	+		24717	11805	14263	14672	19661	19661					-0.010355710594353695
SPLAGHAG	8	Unmodified						0	0	0			REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.362764	708.355488	1.6569	0.0011754	8.0806	0.0057321	9.7376	0.0069075	709.3708208528166	26.191	0.072386	26.191	26.167	26.239	0	618	52	1.2513325	0.030611515	1.2513325	255.47794		6.2498016	0.005674	-0.0015761	-0.00014052	NaN	1.4396	88	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9132.6	+		24718	11805	14263	14672							-0.010355710594353695
SPLAGHAG	8	Unmodified						0	0	0			REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	REV__ENST00000351989.7_1_22:20098018-20098162:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.362764	708.355488	1.7536	0.0012439	12.97	0.0092003	14.723	0.010444	709.3717949280446	26.191	0.072399	26.18	26.131	26.204	-0.011137	615	52	1.2531329	0.030604959	1.2516136	255.8455		6.248459	-0.005674	0.0018921	0.00014052	NaN	1.4396	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7748.5	+		24719	11805	14263	14672							-0.010355710594353695
SPLAVDEAL	9	Unmodified	_SPLAVDEAL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.4829389956	1	914.482939	913.475663	1.827	0.0016707	-1.2837	-0.0011739	0.54329	0.00049683	914.4816206242583	25.081	0.096518	25.081	25.057	25.153	0	369	94	1.4001206	0.055287838	1.4001206	284.63474	0	11.239624						160	5	2	NaN	NaN	NaN	0.04947	1	6296	6296		47.136	10.549	1	26195			24720	6084	14264	14673	19662	19662					0.015463724236610688
SPLAVDEAL	9	Unmodified	_SPLAVDEAL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4829389956	1	914.482939	913.475663	1.7233	0.0015759	0.33932	0.00031031	2.0626	0.0018862	914.4826725980427	25.081	0.072374	25.069	25.045	25.117	-0.012011	369	97	1.4001206	0.057074428	1.3986012	284.63474	0	11.602814						184	4	3	NaN	NaN	NaN	0.032826	1	6175	6175		55.413	20.974	1	23454			24721	6084	14264	14673	19663	19663					0.015463724236610688
SPLDKTNSLI	10	Unmodified	_SPLDKTNSLI_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.30332110175	2	544.303321	1086.59209	1.1445	0.00062295	4.5321	0.0024668	5.6766	0.0030898	544.3061971927431	32.683	0.12066	32.683	32.635	32.756	0	1251	40	0.8670771	0.023943245	0.8670771	351.70236	0	9.711792						119	6	3	NaN	NaN	NaN	0.27719	1	12253	12253		28.896	1.1068	1	15573			24722	1154	14265	14674	19664	19664					0.05225690923566617
SPLDRRMTD	9	Unmodified	_SPLDRRMTD_					0	0	0			REV__ENST00000491442.5_1_1:42313815-42313920:-|nuORF	REV__ENST00000491442.5_1_1:42313815-42313920:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5309685957	1	1090.53097	1089.52369	0.68694	0.00074913	-1.9128	-0.002086	-1.2259	-0.0013369	1090.528664721903	32.344	0.14479	32.341	32.316	32.461	-0.0037613	87	64	1.5670487	0.03710878	1.5655292	317.80484	0	7.5258484						253	7	3	NaN	NaN	NaN	0.18779	1	12064	12064		26.115	0	1	25510	+		24723	12466	14266	14675	19665	19665					-0.017488769279452754
SPLEDEESL	9	Unmodified	_SPLEDEESL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN;CLSPN|p.N404Kfs*2|1|0.16|ENSG00000092853|chr1:35760709-35760710|-/T|frameshift_variant	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.4575121061001	1	1018.45751	1017.45024	2.408	0.0024524	-0.72769	-0.00074112	1.6803	0.0017113	1018.4564785226482	21.488	0.14464	21.488	21.44	21.585	0	270	61	1.458913	0.035565495	1.458913	296.13644	0	7.2192383						231	7	3	NaN	NaN	NaN	0.016254	1	9256	9256		76.739	32.437	1	31375			24724	1103	14267	14676	19666	19666					-0.05779146889403819
SPLEDEESL	9	Unmodified	_SPLEDEESL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN;CLSPN|p.N404Kfs*2|1|0.16|ENSG00000092853|chr1:35760709-35760710|-/T|frameshift_variant	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.4575121061001	1	1018.45751	1017.45024	1.9141	0.0019494	-0.29804	-0.00030354	1.6161	0.0016459	1018.4566314818844	21.489	0.14466	21.475	21.426	21.571	-0.014006	264	64	1.4624695	0.037341714	1.46095	296.85837	0	7.5798035						234	7	3	NaN	NaN	NaN	0.0040938	1	9078	9078		104.71	49.217	1	31552			24725	1103	14267	14676	19667	19667					-0.05779146889403819
SPLESDVSL	9	Unmodified	_SPLESDVSL_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;ENST00000565378.1_1_16:56545067-56553907:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4727682398001	1	946.472768	945.465492	1.7727	0.0016778	5.8884	0.0055732	7.6611	0.007251	946.4790188434816	23.923	0.1688	23.91	23.886	24.054	-0.013048	330	136	1.4233059	0.08013725	1.4217864	289.20273	0	16.283173						602	8	4	NaN	NaN	NaN	0.026295	1	6824	6824		63.958	21.641	1	97594			24726	2446	14268	14677	19668	19668					-0.009422353015565932
SPLGKEDTL	9	Unmodified	_SPLGKEDTL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.25583959290003	2	480.25584	958.497126	2.0778	0.00099788	-0.72026	-0.00034591	1.3576	0.00065197	480.25527747934683	16.85	0.23971	16.837	16.813	17.053	-0.013294	1305	52	0.83389086	0.031374753	0.8323714	338.8068	0	12.747437						310	11	3	NaN	NaN	NaN	0.034172	1	7154	7154		53.652	19.213	1	79289			24727	3881	14269	14678	19669	19669					0.01621757452392103
SPLIYSLET	9	Unmodified	_SPLIYSLET_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5404538745	1	1022.54045	1021.53318	1.3461	0.0013765	-2.0823	-0.0021292	-0.73617	-0.00075277	1022.5382812535964	30.269	0.072372	30.263	30.238	30.311	-0.0064106	156	70	1.5263584	0.040759444	1.5248389	309.81027	0	8.273071						104	4	2	NaN	NaN	NaN	0.12945	1	9242	9242		31.561	0	1	11076	+		24728	9011	14270	14679	19670	19670					0.02327214629235641
SPLIYSLET	9	Unmodified						0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1022.54045	1021.53318	1.3461	0.0013765	-2.0823	-0.0021292	-0.73617	-0.00075277	1022.5382812535964	30.269	0.072372	30.263	30.238	30.311	-0.0064106	156	70	1.5263584	0.040759444	1.5248389	309.81027		8.273071	-0.015747	-7.6104E-05	0.0010118	NaN	31.561	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11076	+		24729	9011	14270	14679							0.02327214629235641
SPLKESIE	8	Unmodified	_SPLKESIE_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	451.7451077311	2	451.745108	901.475663	0.9865	0.00044565	0.84567	0.00038203	1.8322	0.00082768	451.7453771555742	21.2	0.14446	21.186	21.114	21.258	-0.014004	1356	40	0.8024889	0.024036646	0.8009695	326.33972	0	9.774719						136	7	3	NaN	NaN	NaN	0.81756	1	5985	5985		6.8632	0	1	13295	+		24730	8318	14271	14680	19671	19671					0.020983724236771195
SPLKKEQPL	9	Unmodified	_SPLKKEQPL_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.3109491686	2	520.310949	1038.60735	1.4548	0.00075694	-1.3742	-0.00071502	0.080549	4.191E-05	520.3102481460083	13.132	0.096046	13.132	13.108	13.204	0	1239	34	0.87444305	0.020253062	0.87444305	354.89526	0	8.219788						81	5	2	NaN	NaN	NaN	0.03533	1	10163	10163		53.14	24.245	1	6563.7			24731	2932	14272	14681	19672	19672					0.08958602511415847
SPLKKEQPL	9	Unmodified						0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.310949	1038.60735	1.6274	0.00084676	0.8893	0.00046271	2.5167	0.0013095	520.3113683293611	13.254	0.11975	13.243	13.172	13.291	-0.010098	1239	40	0.87444305	0.023932874	0.8729236	354.89523		9.713226	0.055539	0.0008885	-0.00075972	NaN	53.14	70	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4611.1			24732	2932	14272	14681							0.08958602511415847
SPLLDEPFL	9	Unmodified	_SPLLDEPFL_					0	0	0		nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	nc|ENSG00000126391|Q9BZ67-3|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5455392524	1	1030.54554	1029.53826	1.4756	0.0015207	1.204	0.0012408	2.6796	0.0027615	1030.5467211955283	32.394	0.21721	32.394	32.273	32.49	0	150	85	1.5299006	0.049575567	1.5299006	310.49707	0	10.061462						412	10	3	NaN	NaN	NaN	0.023828	1	9760	9760		67.154	30.568	1	50006			24733	7938	14273	14682	19673	19673					0.024675184918578452
SPLLSPSVLL	10	Unmodified	_SPLLSPSVLL_					0	0	0			REV__ENST00000571080.1_1_17:881623-881719:-|nuORF	REV__ENST00000571080.1_1_17:881623-881719:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.3157001955001	2	513.3157	1024.61685	1.6703	0.00085741	4.5291	0.0023248	6.1994	0.0031823	513.3176783272768	27.35	0.024128	27.35	27.326	27.35	0	1254	91	0.8652351	0.055232704	0.8652351	351.2209	0	22.42035						116	2	3	NaN	NaN	NaN	0.44412	1	9575	9575		21.771	6.3084	1	12588	+		24734	12826	14274	14683	19674	19674					0.10552370796949617
SPLMSTIPCI	10	Unmodified	_SPLMSTIPCI_					0	0	0		ENST00000335972.10_1_X:47070268-47070456:+|nuORF	ENST00000335972.10_1_X:47070268-47070456:+|nuORF	ENST00000335972.10_1_X:47070268-47070456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.536965176	1	1061.53697	1060.52969	1.899	0.0020159	0.48675	0.0005167	2.3858	0.0025326	1061.5373150526427	32.49	0.28958	32.49	32.466	32.756	0	150	157	1.5299006	0.092098236	1.5299006	310.3771	0	18.684357						517	13	2	NaN	NaN	NaN	0.2358	1	11126	11126		32.453	6.3378	1	177820			24735	6520	14275	14684	19675	19675					0.00184505259380785
SPLPLNQS	8	Unmodified	_SPLPLNQS_					0	0	0			REV__ENST00000381279.3_1_6:139982242-139982383:+|nuORF	REV__ENST00000381279.3_1_6:139982242-139982383:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4570585961001	1	855.457059	854.449782	2.0518	0.0017553	6.2431	0.0053407	8.295	0.007096	855.4622688888485	24.26	0.16895	24.248	24.224	24.393	-0.012749	357	355	1.407258	0.21142972	1.4057386	286.37888	0	43.026245						886	8	5	NaN	NaN	NaN	0.26796	1	5321	5321		44.638	0.3916	1	1003300	+		24736	11970	14276	14685	19676	19676					0.016735229720438838
SPLPPFADRH	10	Unmodified	_SPLPPFADRH_					0	0	0			REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.79599759615	2	568.795998	1135.57744	0.97418	0.00055411	-1.9848	-0.001129	-1.0107	-0.00057485	568.7939654736518	28.387	0.19306	28.378	28.305	28.499	-0.0089779	1191	52	0.90387505	0.031249523	0.9023556	366.4302	0	12.668549						113	9	2	NaN	NaN	NaN	0.60686	1	13834	13834		14.425	3.8201	1	13160	+		24737	11719	14277	14686	19677	19677					0.015076635660761895
SPLPPFADRH	10	Unmodified						0	0	0			REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.795998	1135.57744	1.8276	0.0010395	-5.069	-0.0028832	-3.2414	-0.0018437	568.7923050996646	28.363	0.072376	28.363	28.339	28.412	0	1188	52	0.90571284	0.03125292	0.90571284	367.1753		12.669891	-0.0072256	-0.0016923	0.0016786	NaN	14.425	83	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9284.5	+		24738	11719	14277	14686							0.015076635660761895
SPLPPFADRH	10	Unmodified						0	0	0			REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	REV__ENST00000320580.8_1_11:66010778-66011036:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.795998	1135.57744	0.97418	0.00055411	-1.9848	-0.001129	-1.0107	-0.00057485	568.7939654736518	28.387	0.19306	28.378	28.305	28.499	-0.0089779	1191	52	0.90387505	0.031249523	0.9023556	366.4302		12.668549	0.0072256	0.0018162	-0.0016786	NaN	14.425	113	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13160	+		24739	11719	14277	14686							0.015076635660761895
SPLQADPFAG	10	Unmodified	_SPLQADPFAG_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.489087006	1	1002.48909	1001.48181	2.2674	0.0022731	4.3419	0.0043527	6.6094	0.0066258	1002.4929207913424	26.215	0.072372	26.215	26.215	26.288	0	219	46	1.4891195	0.026633143	1.4891195	302.33234	0	5.407257						72	4	2	NaN	NaN	NaN	0.37681	1	8648	8648		24.562	4.0066	1	6804.2	+		24740	9612	14278	14687	19678	19678					-0.018871093448183274
SPLQADPFAG	10	Unmodified						0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1002.48909	1001.48181	2.2674	0.0022731	4.3419	0.0043527	6.6094	0.0066258	1002.4929207913424	26.215	0.072372	26.215	26.215	26.288	0	219	46	1.4891195	0.026633143	1.4891195	302.33234		5.407257	0	0	0	NaN	24.562	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6804.2	+		24741	9612	14278	14687							-0.018871093448183274
SPLSEEAVL	9	Unmodified	_SPLSEEAVL_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4935036819	1	944.493504	943.486227	1.3508	0.0012758	-3.9537	-0.0037343	-2.6029	-0.0024585	944.4888553704517	24.623	0.04826	24.623	24.598	24.647	0	333	64	1.4215236	0.03742516	1.4215236	288.8493	0	7.6046753						75	3	2	NaN	NaN	NaN	0.056143	1	6903	6903		44.302	2.5178	1	7516.4			24742	5217	14279	14688	19679	19679					0.012223550780959158
SPLSPEELI	9	Unmodified	_SPLSPEELI_					0	0	0			REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5248038103001	1	984.524804	983.517527	1.4109	0.001389	2.3316	0.0022955	3.7424	0.0036845	984.5269197517395	27.204	0.12067	27.194	27.146	27.267	-0.010126	237	82	1.4784646	0.047985315	1.4769452	300.24353	0	9.744751						196	6	2	NaN	NaN	NaN	0.021105	1	7834	7834		70.6	3.4455	1	20151	+		24743	8994	14280	14689	19680	19680					0.02510928112201327
SPLSPEELI	9	Unmodified						0	0	0			REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	984.524804	983.517527	1.6967	0.0016704	3.3489	0.0032971	5.0456	0.0049675	984.5288219386545	27.181	0.14474	27.181	27.133	27.277	0	240	76	1.4766881	0.04443562	1.4766881	299.88278		9.023865	-0.0066254	0.00049254	-0.00012852	NaN	70.6	207	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21807	+		24744	8994	14280	14689							0.02510928112201327
SPLSPEELI	9	Unmodified						0	0	0			REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	REV__nc|ENSG00000106635|Q9BQE9-2|BCL7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	984.524804	983.517527	1.4109	0.001389	2.3316	0.0022955	3.7424	0.0036845	984.5269197517395	27.204	0.12067	27.194	27.146	27.267	-0.010126	237	82	1.4784646	0.047985315	1.4769452	300.24353		9.744751	0.0066254	-0.00050904	0.00012852	NaN	70.6	196	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20151	+		24745	8994	14280	14689							0.02510928112201327
SPLTHSPV	8	Unmodified	_SPLTHSPV_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.2268851882	2	419.226885	836.439217	1.4478	0.00060697	0.93523	0.00039207	2.3831	0.00099904	419.22737756513766	24.261	0.048231	24.261	24.237	24.285	0	1374	160	0.791392	0.098038316	0.791392	322.20224	0	39.914703						252	3	3	NaN	NaN	NaN	0.72043	1	5220	5220		17.78	0	1	107000	+		24746	8886	14281	14690	19681	19681					0.014455403176157233
SPLTHSPV	8	Unmodified						0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	419.226885	836.439217	1.4478	0.00060697	0.93523	0.00039207	2.3831	0.00099904	419.22737756513766	24.261	0.048231	24.261	24.237	24.285	0	1374	160	0.791392	0.098038316	0.791392	322.20224		39.914703	0.0065195	-0.00027743	0.0035353	NaN	17.78	252	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107000	+		24747	8886	14281	14690							0.014455403176157233
SPMDDGFVSL	10	Unmodified	_SPMDDGFVSL_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4713880313	1	1067.47139	1066.46411	1.9911	0.0021254	-0.16901	-0.00018041	1.8221	0.001945	1067.4719292492155	28.846	0.24137	28.846	28.774	29.015	0	168	88	1.5192716	0.0513978	1.5192716	308.19873	0	10.426544						538	11	5	NaN	NaN	NaN	0.0010171	1	11387	11387		89.256	57.695	1	148810			24748	4627	14282	14691	19682	19682					-0.06646192661969508
SPMDDGFVSL	10	Unmodified	_SPMDDGFVSL_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.4713880313	1	1067.47139	1066.46411	1.2011	0.0012821	0.38222	0.000408	1.5833	0.0016901	1067.4722964338278	28.845	0.28959	28.837	28.765	29.054	-0.0083504	165	103	1.5210435	0.060275555	1.5195241	308.5582	0	12.227478						607	13	5	NaN	NaN	NaN	0.00909	1	11126	11126		72.428	39.976	1	148470			24749	4627	14282	14691	19683	19683					-0.06646192661969508
SPMDDGFVSL	10	Oxidation (M)	_SPM(Oxidation (M))DDGFVSL_		SPM(1)DDGFVSL		SPM(40)DDGFVSL	0	0	1		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.4663026534	1	1083.4663	1082.45903	2.0812	0.0022549	-0.21489	-0.00023283	1.8663	0.0020221	1083.4667646818186	26.094	0.072414	26.094	26.022	26.094	0	207	133	1.496219	0.07797873	1.496219	303.465	0	15.815765						269	4	4	NaN	NaN	NaN	0.14619	1	12072	12072		40.154	19.598	1	48583			24750	4627	14282	14692	19684	19684		494			-0.07890496524601076
SPMDDGFVSL	10	Oxidation (M)	_SPM(Oxidation (M))DDGFVSL_		SPM(1)DDGFVSL		SPM(61)DDGFVSL	0	0	1		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1083.4663026534	1	1083.4663	1082.45903	2.1765	0.0023582	-0.068756	-7.4495E-05	2.1077	0.0022837	1083.466895301492	26.094	0.048286	26.083	26.035	26.083	-0.011137	207	175	1.496219	0.10273588	1.4946996	303.465	0	20.837006						286	3	5	NaN	NaN	NaN	0.026555	1	11756	11756		60.982	33.193	1	44371			24751	4627	14282	14692	19685	19685		494			-0.07890496524601076
SPMDIFDMF	9	Unmodified	_SPMDIFDMF_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.458380504	1	1102.45838	1101.4511	0.97995	0.0010804	0.16966	0.00018705	1.1496	0.0012674	1102.4595916433734	39.718	0.16882	39.718	39.694	39.863	0	105	106	1.5564433	0.06191361	1.5564433	315.61124	0	12.5546875						378	8	4	NaN	NaN	NaN	0.021105	1	12887	12887		70.6	39.039	1	72781			24752	983	14283	14693	19686	19686					-0.09556347045713665
SPMDIFDMF	9	Unmodified	_SPMDIFDMF_					0	0	0		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.458380504	1	1102.45838	1101.4511	1.4972	0.0016506	0.85169	0.00093895	2.3489	0.0025896	1102.459934103555	39.692	0.14469	39.697	39.673	39.818	0.0053368	105	112	1.5564433	0.0654515	1.5549239	315.61124	0	13.272064						324	7	4	NaN	NaN	NaN	0.0062755	1	12551	12551		99.986	58.201	1	53850			24753	983	14283	14693	19687	19687					-0.09556347045713665
SPMDIFDMF	9	Oxidation (M)	_SPM(Oxidation (M))DIFDMF_		SPM(1)DIFDMF		SPM(63)DIFDM(-63)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.4532951260999	1	1118.4533	1117.44602	1.1078	0.0012391	0.19079	0.00021339	1.2986	0.0014525	1118.4542893400153	35.192	0.12066	35.192	35.144	35.265	0	87	106	1.5670487	0.061887383	1.5670487	317.70544	0	12.547119						373	6	4	NaN	NaN	NaN	0.023828	1	13559	13559		67.154	50.738	2	44249			24754	983	14283	14694	19688	19688		103;104			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-96)DIFDM(96)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.4532951260999	1	1118.4533	1117.44602	2.2783	0.0025482	-0.91683	-0.0010254	1.3615	0.0015227	1118.4531628365894	34.469	0.26533	34.469	34.348	34.614	0	108	91	1.5546752	0.053049088	1.5546752	315.19684	0	10.755249						720	12	5	NaN	NaN	NaN	0.0072287	1	13560	13560		98.041	64.616	2	145890			24755	983	14283	14694	19689	19689		103;104			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPMDIFDM(Oxidation (M))F_		SPMDIFDM(1)F		SPM(-93)DIFDM(93)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.4532951260999	1	1118.4533	1117.44602	1.5287	0.0017097	-0.43788	-0.00048975	1.0908	0.00122	1118.4532752841872	34.468	0.33754	34.467	34.346	34.684	-0.0006485	105	97	1.5564433	0.05658567	1.5549239	315.55533	0	11.4722595						733	15	5	NaN	NaN	NaN	0.0062755	1	13158	13158		99.986	68.425	2	146580			24756	983	14283	14694	19690	19690		103;104			-0.10800650908345233
SPMDIFDMF	9	Oxidation (M)	_SPM(Oxidation (M))DIFDMF_		SPM(1)DIFDMF		SPM(60)DIFDM(-60)F	0	0	1		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.4532951260999	1	1118.4533	1117.44602	1.069	0.0011956	0.23221	0.00025972	1.3012	0.0014553	1118.4533444206347	35.191	0.12071	35.191	35.143	35.263	-4.5776E-05	84	91	1.5688156	0.05303228	1.5672961	318.06366	0	10.751831						349	6	4	NaN	NaN	NaN	0.026295	1	13159	13159		63.958	40.624	2	43501			24757	983	14283	14694	19691	19691		103;104			-0.10800650908345233
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(55)DIFDM(55)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.7277431074001	2	567.727743	1133.44093	1.9598	0.0011126	-1.7684	-0.001004	0.19138	0.00010865	567.7270152881068	30.391	0.16891	30.391	30.342	30.511	0	1272	91	0.854179	0.055262625	0.854179	346.29132	0	22.4039						548	8	5	NaN	NaN	NaN	0.032764	1	14212	14212		55.494	28.762	1	165310			24758	983	14283	14695	19692	19692		103;104			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(64)DIFDM(64)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1134.4482097482	1	1134.44821	1133.44093	1.9769	0.0022426	-1.044	-0.0011844	0.93283	0.0010583	1134.44696885347	30.632	0.21721	30.632	30.56	30.777	0	114	103	1.5511382	0.06014788	1.5511382	314.42557	0	12.192352						496	10	5	NaN	NaN	NaN	0.026295	1	14213	14213		63.958	44.84	1	60387			24759	983	14283	14695	19693	19693		103;104			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(47)DIFDM(47)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7277431074001	2	567.727743	1133.44093	1.2271	0.00069665	-2.9797	-0.0016917	-1.7526	-0.000995	567.7275343198957	30.631	0.31365	30.625	30.553	30.866	-0.0057545	1275	82	0.85233563	0.049739003	0.8508162	345.544	0	20.164612						716	14	6	NaN	NaN	NaN	0.04947	1	13756	13756		47.136	33.094	1	186740			24760	983	14283	14695	19694	19694		103;104			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(53)DIFDM(53)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7277431074001	2	567.727743	1133.44093	1.1366	0.00064527	-0.76722	-0.00043557	0.36936	0.00020969	567.7268334313679	30.39	0.24131	30.383	30.311	30.552	-0.0064106	1269	82	0.8560222	0.049739003	0.85450274	347.03857	0	20.164612						670	11	5	NaN	NaN	NaN	0.036546	1	13757	13757		52.624	27.663	1	175680			24761	983	14283	14695	19695	19695		103;104			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(67)DIFDM(67)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1134.4482097482	1	1134.44821	1133.44093	1.0093	0.001145	0.64707	0.00073407	1.6564	0.0018791	1134.4503359864532	30.631	0.26537	30.625	30.505	30.77	-0.0057545	111	85	1.5529068	0.049512506	1.5513873	314.78406	0	10.036499						464	12	4	NaN	NaN	NaN	0.023828	1	13758	13758		67.154	42.592	1	56277			24762	983	14283	14695	19696	19696		103;104			-0.12044954770931326
SPMDIFDMF	9	2 Oxidation (M)	_SPM(Oxidation (M))DIFDM(Oxidation (M))F_		SPM(1)DIFDM(1)F		SPM(87)DIFDM(87)F	0	0	2		ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000086061|P31689-2|DNAJA1;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000140403|Q8WW22-2|DNAJA4	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	ENST00000485075.1_1_15:78562865-78566840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1134.4482097482	1	1134.44821	1133.44093	0.95962	0.0010886	3.4311	0.0038924	4.3907	0.004981	1134.4524339248842	30.39	0.19306	30.383	30.335	30.528	-0.0064106	84	97	1.5688156	0.056561828	1.5672961	318.00888	0	11.465454						497	9	3	NaN	NaN	NaN	0.011942	1	13759	13759		87.021	55.345	1	65280			24763	983	14283	14695	19697	19697		103;104			-0.12044954770931326
SPMEMEDAL	9	Unmodified	_SPMEMEDAL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.4169096198001	1	1022.41691	1021.40963	2.0197	0.002065	1.3942	0.0014254	3.4139	0.0034905	1022.4183624786933	24.454	0.096487	24.454	24.406	24.502	0	243	94	1.4749115	0.05508256	1.4749115	299.36838	0	11.180328						177	5	2	NaN	NaN	NaN	0.04947	1	9417	9417		47.136	23.285	1	17915			24764	4817	14284	14696	19698	19698					-0.10021527805042751
SPMEMEDAL	9	Unmodified	_SPMEMEDAL_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.4169096198001	1	1022.41691	1021.40963	1.6036	0.0016396	0.75803	0.00077502	2.3617	0.0024146	1022.4180412464266	24.454	0.096596	24.441	24.417	24.513	-0.012749	243	79	1.4749115	0.046200752	1.473392	299.36838	0	9.377563						145	5	2	NaN	NaN	NaN	0.18779	1	9228	9228		26.115	5.5595	1	14284			24765	4817	14284	14696	19699	19699					-0.10021527805042751
SPNAEIHIL	9	Unmodified	_SPNAEIHIL_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.27182400810005	2	497.271824	992.529095	1.8861	0.00093788	-1.0417	-0.00051803	0.84431	0.00041985	497.27150962235413	21.874	0.24091	21.874	21.754	21.994	0	1317	91	0.8265074	0.05534035	0.8265074	335.64404	0	22.473663						368	11	3	NaN	NaN	NaN	0.030545	1	8322	8322		58.398	18.939	1	47048			24766	897	14285	14697	19700	19700					0.03253169926199462
SPNAEIHIL	9	Unmodified	_SPNAEIHIL_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.27182400810005	2	497.271824	992.529095	0.98887	0.00049173	-0.48982	-0.00024357	0.49905	0.00024816	497.27198928935	21.898	0.096365	21.884	21.836	21.932	-0.013895	1317	97	0.8265074	0.05902964	0.82498795	335.64404	0	23.971924						235	5	4	NaN	NaN	NaN	0.04947	1	8156	8156		47.136	23.801	1	31179			24767	897	14285	14697	19701	19701					0.03253169926199462
SPNLGGNS	8	Unmodified	_SPNLGGNS_					0	0	0			REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	REV__nc|ENSG00000090905|Q8NDV7-2|TNRC6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3475081467001	1	745.347508	744.340232	1.6475	0.001228	-10.919	-0.0081384	-9.2714	-0.0069104	745.3394215083941	21.898	0.096384	21.884	21.86	21.956	-0.013895	627	40	1.24593	0.023418784	1.2444105	254.14162	0	4.7769165						100	5	2	NaN	NaN	NaN	0.82627	1	3891	3891		5.6942	2.1244	1	8442.6	+		24768	8727	14286	14698	19702	19702					-0.04216482647279918
SPNSDDTVL	9	Unmodified	_SPNSDDTVL_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4316317065999	1	947.431632	946.424355	2.2359	0.0021184	-1.1749	-0.0011132	1.061	0.0010052	947.4311959331145	18.82	0.288	18.82	18.748	19.036	0	354	97	1.4090419	0.057098627	1.4090419	286.30026	0	11.601746						552	13	3	NaN	NaN	NaN	0.03533	1	6985	6985		53.14	15.009	1	93770			24769	1378	14287	14699	19703	19703					-0.05099996341050428
SPNSDDTVL	9	Unmodified	_SPNSDDTVL_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4316317065999	1	947.431632	946.424355	1.8555	0.001758	-1.9786	-0.0018746	-0.12306	-0.00011659	947.4308958977016	18.842	0.31221	18.828	18.756	19.068	-0.014059	351	85	1.4108255	0.049956083	1.409306	286.6627	0	10.150452						786	14	5	NaN	NaN	NaN	0.026443	1	6853	6853		63.765	28.468	1	108490			24770	1378	14287	14699	19704	19704					-0.05099996341050428
SPNTRAELK	9	Unmodified	_SPNTRAELK_					0	0	0			REV__ENST00000548760.2_1_12:98909310-98909562:-|nuORF	REV__ENST00000548760.2_1_12:98909310-98909562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.28018035644993	2	508.28018	1014.54581	2.2796	0.0011587	-12.163	-0.0061824	-9.8838	-0.0050237	508.27418554990965	18.7	0.16801	18.7	18.676	18.844	0	1299	52	0.8375814	0.031374753	0.8375814	340.04034	0	12.737518						170	8	3	NaN	NaN	NaN	0.25448	1	9154	9154		21.835	5.2508	1	19634	+		24771	12729	14288	14700	19705	19705					0.03911670812124157
SPNYDHVVL	9	Unmodified	_SPNYDHVVL_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.26145628705	2	522.261456	1042.50836	1.6062	0.00083887	-1.5562	-0.00081274	0.050041	2.6134E-05	522.2603409454571	19.972	0.21667	19.958	19.909	20.126	-0.014141	1311	82	0.83019954	0.049803615	0.8286801	336.9224	0	20.211945						355	10	2	NaN	NaN	NaN	0.057383	1	10112	10112		43.776	14.88	1	79281			24772	961	14289	14701	19706	19706					-0.011194204534831442
SPPDFEIHITM	11	Unmodified	_SPPDFEIHITM_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.80791334065	2	643.807913	1285.60127	1.7763	0.0011436	-2.9225	-0.0018815	-1.1462	-0.00073795	643.8067485043607	27.471	0.2414	27.471	27.374	27.615	0	1161	85	0.9222442	0.051367104	0.9222442	373.35324	0	20.795044						426	11	3	NaN	NaN	NaN	0.53805	1	18528	18528		28.495	20.908	1	44388			24773	4508	14290	14702	19707	19707					-0.0301028378241881
SPPGAALP	8	Unmodified	_SPPGAALP_					0	0	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3879163984001	1	709.387916	708.38064	1.2167	0.00086312	5.212	0.0036973	6.4287	0.0045604	709.3914629175206	28.605	0.048265	28.605	28.581	28.629	0	621	79	1.2495319	0.046845198	1.2495319	255.11014	0	9.564117						84	3	2	NaN	NaN	NaN	0.84651	1	3397	3397		1.6704	0	1	6182.7			24774	8063	14291	14703	19708	19708					0.014784837431420783
SPPGAALP	8	Unmodified						0	0	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	709.387916	708.38064	0.99673	0.00070707	5.1137	0.0036276	6.1105	0.0043347	709.3910206524462	28.604	0.096498	28.596	28.547	28.644	-0.0083504	624	70	1.247731	0.041428804	1.2462115	254.74246		8.458313	-0.0045503	-3.0409E-05	-0.0016602	NaN	1.6704	110	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8863.5			24775	8063	14291	14703							0.014784837431420783
SPPGGSGGG	9	Unmodified	_SPPGGSGGG_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.2947442947002	1	672.294744	671.287468	1.1144	0.00074923	-0.95016	-0.00063879	0.16427	0.00011044	672.29537057122	28.942	0.12069	28.933	28.861	28.982	-0.0083485	1113	49	0.9515937	0.029327333	0.95007426	194.48524	0	5.993866						97	6	2	NaN	NaN	NaN	0.6907	1	2544	2544		0	0	1	7390.1	+		24776	10824	14292	14704	19709	19709					-0.06132440710075571
SPPGNGCA	8	Unmodified	_SPPGNGCA_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	351.64741344669994	2	351.647413	701.280274	1.0029	0.00035268	-3.2065	-0.0011275	-2.2035	-0.00077487	351.64683626001437	40.753	0.14394	40.753	40.729	40.873	0	1521	43	0.70049703	0.026039124	0.70049703	286.08047	0	10.634308						101	7	2	NaN	NaN	NaN	0.84945	1	3239	3239		0	0	1	5651.9			24777	5303	14293	14705	19710	19710					-0.08231496582175168
SPPKKMKG	8	Unmodified	_SPPKKMKG_					0	0	0		ENSG00000008083|ENST00000341776|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;nc|ENSG00000008083|Q92833-2|JARID2	ENSG00000008083|ENST00000341776|JARID2	ENSG00000008083|ENST00000341776|JARID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.75475555815007	2	436.754756	871.494958	1.2089	0.00052801	7.2263	0.0031561	8.4353	0.0036841	436.7578684719063	20.237	0.21662	20.222	20.102	20.319	-0.014143	1461	43	0.7376554	0.025982678	0.73613596	300.1293	0	10.571533						236	10	3	NaN	NaN	NaN	0.76633	1	5543	5543		13.737	3.6855	1	50635			24778	368	14294	14706	19711	19711					0.0540705023360033
SPPLAAAE	8	Unmodified	_SPPLAAAE_					0	0	0		ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3933957068	1	755.393396	754.386119	1.561	0.0011792	5.0269	0.0037973	6.5879	0.0049764	755.3968585086974	28.822	0.16895	28.822	28.774	28.943	0	531	85	1.3034686	0.050276518	1.3034686	265.81406	0	10.252777						276	8	3	NaN	NaN	NaN	0.82332	1	4145	4145		6.0903	0	1	45855			24779	5660	14295	14707	19712	19712					-0.0008983746505464296
SPPQNDVP	8	Unmodified	_SPPQNDVP_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4050230256	1	853.405023	852.397747	1.2733	0.0010866	8.4832	0.0072396	9.7565	0.0083262	853.4128956572932	31.911	0.1207	31.911	31.887	32.008	0	402	46	1.3804773	0.026806235	1.3804773	280.93967	0	5.4553223						118	6	3	NaN	NaN	NaN	0.74229	1	5413	5413		16.417	3.8288	1	8881.5	+		24780	10359	14296	14708	19713	19713					-0.03435640441716714
SPPRLSGLDR	10	Unmodified	_SPPRLSGLDR_					0	0	0			REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.30672945795	2	549.306729	1096.59891	1.2947	0.00071116	-9.2129	-0.0050607	-7.9183	-0.0043496	549.3013130567005	20.213	0.12016	20.213	20.189	20.309	0	1209	40	0.892844	0.023909628	0.892844	362.11258	0	9.6970825						92	6	2	NaN	NaN	NaN	0.6772	1	12709	12709		9.6116	1.3214	1	14610	+		24781	11516	14297	14709	19714	19714					0.05447048594805892
SPPRLSGLDR	10	Unmodified						0	0	0			REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.306729	1096.59891	1.2947	0.00071116	-9.2129	-0.0050607	-7.9183	-0.0043496	549.3013130567005	20.213	0.12016	20.213	20.189	20.309	0	1209	40	0.892844	0.023909628	0.892844	362.11258		9.6970825	-0.064992	-0.00059842	0.00075972	NaN	9.6116	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14610	+		24782	11516	14297	14709							0.05447048594805892
SPPRLSGLDR	10	Unmodified						0	0	0			REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.306729	1096.59891	1.4267	0.0007837	-7.6851	-0.0042215	-6.2584	-0.0034378	549.3021941835912	20.357	0.16861	20.343	20.295	20.463	-0.014141	1209	43	0.892844	0.025753021	0.8913246	362.11255		10.444702	0.064992	0.0010801	-0.00075972	NaN	9.6116	98	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11258	+		24783	11516	14297	14709							0.05447048594805892
SPQAEQPSL	9	Unmodified	_SPQAEQPSL_					0	0	0		nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.4683515639	1	956.468352	955.461075	1.8591	0.0017782	-2.1204	-0.0020281	-0.26123	-0.00024986	956.4666223491033	17.597	0.16777	17.597	17.525	17.693	0	330	76	1.4233059	0.04457271	1.4233059	289.1593	0	9.05542						245	8	2	NaN	NaN	NaN	0.19455	1	7213	7213		25.681	6.5631	1	22656			24784	1083	14298	14710	19715	19715					-0.018436997244748454
SPQAEQPSL	9	Unmodified	_SPQAEQPSL_					0	0	0		nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.4683515639	1	956.468352	955.461075	1.9099	0.0018268	-0.92818	-0.00088778	0.98171	0.00093897	956.4680999382247	17.594	0.16784	17.58	17.508	17.676	-0.013567	330	76	1.4233059	0.04457271	1.4217864	289.1593	0	9.05542						241	8	2	NaN	NaN	NaN	0.17328	1	7071	7071		27.046	0.3149	1	22442			24785	1083	14298	14710	19716	19716					-0.018436997244748454
SPQEDGVEL	9	Unmodified	_SPQEDGVEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.4472817708	1	973.447282	972.440005	1.7336	0.0016876	0.62113	0.00060463	2.3548	0.0022922	973.4479592758842	20.429	0.21641	20.429	20.381	20.597	0	354	64	1.4090419	0.03745711	1.4090419	286.19037	0	7.60791						320	10	3	NaN	NaN	NaN	0.019939	1	7670	7670		72.076	30.616	1	51603			24786	2724	14299	14711	19717	19717					-0.047317098239886946
SPQEDGVEL	9	Unmodified	_SPQEDGVEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.4472817708	1	973.447282	972.440005	2.1682	0.0021106	2.15	0.002093	4.3182	0.0042036	973.4492402700245	20.069	0.072056	20.069	20.069	20.141	0	354	40	1.4090419	0.023185253	1.4090419	286.19037	0	4.709137						41	4	2	NaN	NaN	NaN	0.67082	1	7671	7671		1.7022	0.46035	1	2487.1			24787	2724	14299	14711	19718	19718					-0.047317098239886946
SPQEDGVEL	9	Unmodified	_SPQEDGVEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.4472817708	1	973.447282	972.440005	1.4868	0.0014473	0.93454	0.00090973	2.4213	0.002357	973.4485701562812	20.429	0.26484	20.415	20.319	20.584	-0.014141	351	73	1.4108255	0.04279661	1.409306	286.55264	0	8.692413						311	12	3	NaN	NaN	NaN	0.0080618	1	7519	7519		96.341	48.339	1	51157			24788	2724	14299	14711	19719	19719					-0.047317098239886946
SPQKLLLF	8	Unmodified	_SPQKLLLF_					0	0	0		ENSG00000235568|ENST00000329021|NFAM1	ENSG00000235568|ENST00000329021|NFAM1	ENSG00000235568|ENST00000329021|NFAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.5767798013003	1	945.57678	944.569503	1.3449	0.0012718	1.0269	0.00097103	2.3719	0.0022428	945.577350244834	36.205	0.096466	36.205	36.157	36.254	0	228	58	1.4837929	0.033742428	1.4837929	301.49725	0	6.8562317						138	5	3	NaN	NaN	NaN	0.27223	1	6939	6939		44.302	0	1	12897			24789	6050	14300	14712	19720	19720					0.0950013631662614
SPQQQFVYE	9	Unmodified	_SPQQQFVYE_					0	0	0			REV__CON__Q3ZBS7	REV__CON__Q3ZBS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.5211154158999	1	1125.52112	1124.51384	1.4164	0.0015942	5.2258	0.0058817	6.6422	0.0074759	1125.5281152139696	34.999	0.19291	34.999	34.927	35.12	0	63	52	1.5811787	0.030014992	1.5811787	320.54556	0	6.084839						160	9	2	NaN	NaN	NaN	0.23112	1	13863	13863		23.334	0.21685	1	15831	+	+	24790	8280	14301	14713	19721	19721					-0.04343741661659806
SPRQSPKRRR	10	Unmodified	_SPRQSPKRRR_					0	0	0		nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3763433924	2	634.376343	1266.73813	2.0967	0.0013301	-1.5588	-0.00098884	0.53797	0.00034128	634.3756818557808	41.328	1.4183	41.336	40.759	42.177	0.0082626	1251	109	0.8670771	0.06625068	0.8655577	351.0754	0	26.824585						3866	60	3	NaN	NaN	NaN	0.75556	1	17352	17352		2.8895	0.29002	1	2350600			24791	2366	14302	14714	19722	19722					0.11543431002814941
SPRQSPKRRR	10	Unmodified						0	0	0		nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	634.376343	1266.73813	1.6623	0.0010545	-1.4874	-0.0009436	0.17481	0.0001109	634.3753752621355	41.522	0.52888	41.522	41.498	42.027	0	1251	76	0.8670771	0.046029747	0.8670771	351.0754		18.637207	0.092939	5.6831E-05	0.00075972	NaN	2.8895	984	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705760			24792	2366	14302	14714							0.11543431002814941
SPRTRGKA	8	Unmodified	_SPRTRGKA_					0	0	0			REV__ENSG00000162543|ENST00000375099|UBXN10	REV__ENSG00000162543|ENST00000375099|UBXN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.7566754704	2	436.756675	871.498798	1.153	0.00050358	3.3295	0.0014542	4.4825	0.0019577	436.757885991575	20.213	0.16821	20.213	20.141	20.309	0	1383	34	0.7858409	0.020358562	0.7858409	319.73453	0	8.283264						136	8	2	NaN	NaN	NaN	0.75561	1	5684	5684		15.175	0	1	15209	+		24793	10241	14303	14715	19723	19723					0.05790856051658011
SPRTRGKA	8	Unmodified	_SPRTRGKA_					0	0	0			REV__ENSG00000162543|ENST00000375099|UBXN10	REV__ENSG00000162543|ENST00000375099|UBXN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.7566754704	2	436.756675	871.498798	1.2014	0.00052472	3.8346	0.0016748	5.036	0.0021995	436.75814752380927	20.261	0.16845	20.246	20.15	20.319	-0.014141	1386	37	0.78399014	0.022210538	0.7824707	318.9815	0	9.036774						116	8	2	NaN	NaN	NaN	0.75561	1	5546	5546		15.175	0	1	13433	+		24794	10241	14303	14715	19724	19724					0.05790856051658011
SPRTRGKA	8	Unmodified						0	0	0			REV__ENSG00000162543|ENST00000375099|UBXN10	REV__ENSG00000162543|ENST00000375099|UBXN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	436.756675	871.498798	1.153	0.00050358	3.3295	0.0014542	4.4825	0.0019577	436.757885991575	20.213	0.16821	20.213	20.141	20.309	0	1383	34	0.7858409	0.020358562	0.7858409	319.73453		8.283264	-0.016867	-0.00018227	0.0016851	NaN	15.175	136	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15209	+		24795	10241	14303	14715							0.05790856051658011
SPRTRGKA	8	Unmodified						0	0	0			REV__ENSG00000162543|ENST00000375099|UBXN10	REV__ENSG00000162543|ENST00000375099|UBXN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	436.756675	871.498798	1.2014	0.00052472	3.8346	0.0016748	5.036	0.0021995	436.75814752380927	20.261	0.16845	20.246	20.15	20.319	-0.014141	1386	37	0.78399014	0.022210538	0.7824707	318.9815		9.036774	0.016867	0.00025897	-0.0016851	NaN	15.175	116	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13433	+		24796	10241	14303	14715							0.05790856051658011
SPRVTRHWR	9	Unmodified	_SPRVTRHWR_					0	0	0			REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8337800859501	2	597.83378	1193.65301	0.99536	0.00059506	7.5359	0.0045052	8.5312	0.0051003	597.8381704967169	33.456	0.072388	33.456	33.431	33.504	0	1191	25	0.90387505	0.014703274	0.90387505	366.21625	0	5.9572144						27	4	2	NaN	NaN	NaN	0.67082	1	16271	16271		1.7022	0.66216	1	1707.8	+		24797	11768	14304	14716	19725	19725					0.06392685537048237
SPRVTRHWR	9	Unmodified						0	0	0			REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.83378	1193.65301	0.99536	0.00059506	7.5359	0.0045052	8.5312	0.0051003	597.8381704967169	33.456	0.072388	33.456	33.431	33.504	0	1191	25	0.90387505	0.014703274	0.90387505	366.21625		5.9572144	0.0015965	-0.00079837	-0.00015919	NaN	1.7022	27	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1707.8	+		24798	11768	14304	14716							0.06392685537048237
SPRVTRHWR	9	Unmodified						0	0	0			REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	REV__ENST00000337318.7_2_10:126312142-126370192:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.83378	1193.65301	1.1828	0.00070714	9.3891	0.0056131	10.572	0.0063203	598.3415301178275	33.454	0.04829	33.452	33.428	33.476	-0.0018501	1188	37	0.90571284	0.022052526	0.9041934	366.96085		8.934845	-0.0015965	0.0014175	0.00015919	NaN	1.7022	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2711.5	+		24799	11768	14304	14716							0.06392685537048237
SPSDFSVSL	9	Unmodified	_SPSDFSVSL_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4465534893001	1	938.446553	937.439277	2.3372	0.0021934	-0.25936	-0.0002434	2.0779	0.00195	938.4461046344679	26.263	0.096468	26.252	26.228	26.324	-0.011137	378	43	1.3947657	0.024996638	1.3932463	283.43848	0	5.079712						95	5	2	NaN	NaN	NaN	0.04947	1	6622	6622		47.136	7.677	1	8663.3			24800	772	14305	14717	19726	19726					-0.03194504473037796
SPSDLLELL	9	Unmodified	_SPSDLLELL_					0	0	0		LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2	LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant	LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5404538745	1	986.540454	985.533177	1.2624	0.0012454	3.0282	0.0029874	4.2906	0.0042329	986.5437879747791	35.53	0.12064	35.53	35.482	35.603	0	201	55	1.4997677	0.03193772	1.4997677	304.5611	0	6.485626						120	6	2	NaN	NaN	NaN	0.094712	1	8072	8072		36.586	0	1	12475			24801	2689	14306	14718	19727	19727					0.039832146292383186
SPSDLLELL	9	Unmodified	_SPSDLLELL_					0	0	0		LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2	LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant	LILRB2|p.G292Afs*25|1|0.51|ENSG00000131042|chr19:54278892-54278892|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5404538745	1	986.540454	985.533177	0.99306	0.00097969	0.28997	0.00028606	1.283	0.0012658	986.5409247985658	35.505	0.14475	35.505	35.481	35.626	0.00052643	198	52	1.5015416	0.03015852	1.5000222	304.9214	0	6.1243286						135	7	2	NaN	NaN	NaN	0.094712	1	7900	7900		36.586	5.0254	1	12793			24802	2689	14306	14718	19728	19728					0.039832146292383186
SPSEDEETF	9	Unmodified	_SPSEDEETF_					0	0	0		nc|ENSG00000109079|Q13829-2|TNFAIP1;ENSG00000109079|ENST00000226225|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.4054765355997	1	1040.40548	1039.3982	2.2092	0.0022985	-1.5769	-0.0016406	0.6323	0.00065785	1040.4040362949254	17.93	0.11999	17.916	17.892	18.012	-0.013786	297	34	1.4428991	0.019582868	1.4413797	292.8032	0	3.9739075						90	6	2	NaN	NaN	NaN	0.49672	1	9962	9962		9.746	2.2056	1	5693			24803	1710	14307	14719	19729	19729					-0.1199231030318515
SPSEIMESL	9	Unmodified	_SPSEIMESL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.C349Yfs*23|1|0.16|ENSG00000086758|chrX:53628819-53628820|AC/-|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.4604889940002	1	992.460489	991.453213	2.4595	0.0024409	-1.3553	-0.0013451	1.1042	0.0010958	992.4599184324852	25.829	0.072399	25.829	25.805	25.877	0	276	52	1.4553556	0.030238748	1.4553556	295.51794	0	6.1401367						88	4	2	NaN	NaN	NaN	0.12328	1	8253	8253		32.453	9.1183	1	7308.5			24804	995	14308	14720	19730	19730					-0.042855950362422846
SPSEIMESL	9	Unmodified	_SPSEIMESL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.C349Yfs*23|1|0.16|ENSG00000086758|chrX:53628819-53628820|AC/-|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.4604889940002	1	992.460489	991.453213	2.4373	0.002419	-0.086425	-8.5774E-05	2.3509	0.0023332	992.4602987517399	25.853	0.096565	25.841	25.793	25.89	-0.0116	276	55	1.4553556	0.03201568	1.4538362	295.51794	0	6.5009766						102	5	2	NaN	NaN	NaN	0.043119	1	8087	8087		49.833	13.246	1	9136.9			24805	995	14308	14720	19731	19731					-0.042855950362422846
SPSEVTYEL	9	Unmodified	_SPSEVTYEL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.4833329261	1	1024.48333	1023.47606	2.6176	0.0026816	-0.98715	-0.0010113	1.6304	0.0016703	1024.482445683459	22.959	0.096291	22.959	22.935	23.031	0	231	73	1.4820169	0.042619705	1.4820169	300.80252	0	8.650421						274	5	4	NaN	NaN	NaN	0.030669	1	9489	9489		58.235	22.939	1	50863			24806	989;7799	14309	14721	19732	19732					-0.03474252647129106
SPSEVTYEL	9	Unmodified	_SPSEVTYEL_					0	0	0		FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant;ENSG00000086570|ENST00000261800|FAT2;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant	FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.4833329261	1	1024.48333	1023.47606	1.7465	0.0017893	-0.091862	-9.4111E-05	1.6547	0.0016952	1024.48383593922	22.982	0.12051	22.969	22.921	23.041	-0.01354	231	73	1.4820169	0.042628646	1.4804975	300.80252	0	8.652283						260	6	3	NaN	NaN	NaN	0.028349	1	9300	9300		61.271	26.832	1	50933			24807	989;7799	14309	14721	19733	19733					-0.03474252647129106
SPSFGDPQL	9	Unmodified	_SPSFGDPQL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4468878403001	1	947.446888	946.439611	2.0014	0.0018962	0.57576	0.0005455	2.5771	0.0024417	947.447435849212	23.345	0.14471	23.345	23.296	23.441	0	324	91	1.42687	0.053490162	1.42687	289.92264	0	10.86853						266	7	3	NaN	NaN	NaN	2.4842E-13	1	6987	6987		153.86	95.264	1	28160			24808	5694	14310	14722	19734	19734					-0.0357508475318582
SPSFGDPQL	9	Unmodified	_SPSFGDPQL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4468878403001	1	947.446888	946.439611	1.8253	0.0017294	-0.034031	-3.2242E-05	1.7913	0.0016971	947.4465968155622	23.344	0.12062	23.331	23.283	23.403	-0.013294	321	85	1.4286518	0.049913406	1.4271324	290.2847	0	10.141815						252	6	3	NaN	NaN	NaN	0.0014219	1	6855	6855		112.76	67.596	1	27542			24809	5694	14310	14722	19735	19735					-0.0357508475318582
SPSGAPPD	8	Unmodified	_SPSGAPPD_					0	0	0			REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3257100721	1	727.32571	726.318434	1.113	0.00080951	5.7337	0.0041703	6.8467	0.0049798	727.3294589571441	26.843	0.14478	26.843	26.795	26.94	0	654	73	1.2297117	0.043287992	1.2297117	250.94592	0	8.833725						164	7	2	NaN	NaN	NaN	0.76633	1	3705	3705		13.737	0	1	12556	+		24810	11629	14311	14723	19736	19736					-0.05567287395854237
SPSGAPPD	8	Unmodified						0	0	0			REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	727.32571	726.318434	1.113	0.00080951	5.7337	0.0041703	6.8467	0.0049798	727.3294589571441	26.843	0.14478	26.843	26.795	26.94	0	654	73	1.2297117	0.043287992	1.2297117	250.94592		8.833725	0.0057435	-0.0004585	0.00075972	NaN	13.737	164	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12556	+		24811	11629	14311	14723							-0.05567287395854237
SPSGAPPD	8	Unmodified						0	0	0			REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	REV__ENST00000293825.10_1_17:7452306-7452444:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	727.32571	726.318434	1.1688	0.00085012	6.8873	0.0050093	8.0562	0.0058595	727.3305219196983	26.842	0.12066	26.832	26.808	26.928	-0.010645	654	67	1.2297117	0.039676428	1.2281922	250.94592		8.09671	-0.0057435	0.00038058	-0.00075972	NaN	13.737	143	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11872	+		24812	11629	14311	14723							-0.05567287395854237
SPSGLPPD	8	Unmodified	_SPSGLPPD_					0	0	0			REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.3726602647	1	769.37266	768.365384	1.5285	0.001176	5.4427	0.0041875	6.9712	0.0053635	769.3765199246557	26.795	0.21767	26.795	26.746	26.964	0	558	115	1.2873057	0.06834173	1.2873057	262.4327	0	13.932297						356	10	3	NaN	NaN	NaN	0.65075	1	4339	4339		22.126	0	1	37298	+		24813	11655	14312	14724	19737	19737					-0.02806427844711834
SPSGLPPD	8	Unmodified	_SPSGLPPD_					0	0	0			REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.3726602647	1	769.37266	768.365384	1.3458	0.0010354	5.4283	0.0041764	6.7741	0.0052118	769.3765247370094	26.794	0.19309	26.783	26.735	26.928	-0.010645	555	112	1.2891023	0.066539645	1.2875829	262.79898	0	13.564926						372	9	3	NaN	NaN	NaN	0.80692	1	4260	4260		8.2903	0	1	39733	+		24814	11655	14312	14724	19738	19738					-0.02806427844711834
SPSGLPPD	8	Unmodified						0	0	0			REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	769.37266	768.365384	1.5285	0.001176	5.4427	0.0041875	6.9712	0.0053635	769.3765199246557	26.795	0.21767	26.795	26.746	26.964	0	558	115	1.2873057	0.06834173	1.2873057	262.4327		13.932297	0.0057404	5.2655E-06	-0.0001386	NaN	22.126	356	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37298	+		24815	11655	14312	14724							-0.02806427844711834
SPSGLPPD	8	Unmodified						0	0	0			REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	769.37266	768.365384	1.3458	0.0010354	5.4283	0.0041764	6.7741	0.0052118	769.3765247370094	26.794	0.19309	26.783	26.735	26.928	-0.010645	555	112	1.2891023	0.066539645	1.2875829	262.79898		13.564926	-0.0057404	-5.8568E-06	0.0001386	NaN	22.126	372	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39733	+		24816	11655	14312	14724							-0.02806427844711834
SPSPDHVVK	9	Unmodified	_SPSPDHVVK_					0	0	0		ENST00000560933.5_1_22:39487593-39488026:+|nuORF	ENST00000560933.5_1_22:39487593-39488026:+|nuORF	ENST00000560933.5_1_22:39487593-39488026:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	965.5050714212001	1	965.505071	964.497795	1.7234	0.0016639	-5.2248	-0.0050445	-3.5014	-0.0033806	965.500258667478	28.677	0.12067	28.677	28.629	28.75	0	255	112	1.4678029	0.06575763	1.4678029	298.15964	0	13.357574						284	6	3	NaN	NaN	NaN	0.36492	1	7467	7467		15.175	3.1267	1	64675			24817	7596	14313	14725	19739	19739					0.01412596892100737
SPSPGPHA	8	Unmodified	_SPSPGPHA_					0	0	0		ENSG00000233701|ENST00000413199|PRR23C	ENSG00000233701|ENST00000413199|PRR23C	ENSG00000233701|ENST00000413199|PRR23C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3576789025001	1	749.357679	748.350402	1.6269	0.0012191	-1.3753	-0.0010306	0.25155	0.0001885	749.3570893447462	52.882	0.14363	52.882	52.811	52.954	0	636	52	1.2405256	0.030631065	1.2405256	253.01468	0	6.247467						198	7	3	NaN	NaN	NaN	0.84692	1	4022	4022		1.4396	0	1	18524			24818	6041	14314	14726	19740	19740					-0.03383874922042196
SPSPLGGIKR	10	Unmodified	_SPSPLGGIKR_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.3009157985501	2	506.300916	1010.58728	1.5686	0.00079421	-3.0953	-0.0015672	-1.5266	-0.00077294	506.29929030716386	14.284	0.07184	14.273	14.273	14.345	-0.011219	1317	31	0.8265074	0.018462718	0.82498795	335.56207	0	7.49588						53	4	2	NaN	NaN	NaN	0.65442	1	8835	8835		11.17	4.3071	1	4581.8			24819	1024	14315	14727	19741	19741					0.08240851571486019
SPSPQAALP	9	Unmodified	_SPSPQAALP_					0	0	0			REV__nc|ENSG00000196588|Q969V6|MRTFA	REV__nc|ENSG00000196588|Q969V6|MRTFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.4570585961	1	867.457059	866.449782	1.8973	0.0016458	-1.9282	-0.0016726	-0.030891	-2.6797E-05	867.4560779669637	19.082	0.096148	19.068	19.044	19.14	-0.014059	459	34	1.3464937	0.019695759	1.3449743	273.9532	0	4.0072327						67	5	2	NaN	NaN	NaN	0.074859	1	5480	5480		39.459	0	1	4261.4	+		24820	11112	14316	14728	19742	19742					0.011215229720392017
SPSPQAALP	9	Unmodified						0	0	0			REV__nc|ENSG00000196588|Q969V6|MRTFA	REV__nc|ENSG00000196588|Q969V6|MRTFA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	867.457059	866.449782	1.9307	0.0016748	-1.7652	-0.0015312	0.16545	0.00014352	867.4547785447747	19.06	0.09594	19.06	19.036	19.132	0	465	46	1.3429124	0.026863575	1.3429124	273.22458		5.465576	-0.0037685	7.3677E-05	-0.0010309	NaN	39.459	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4780.9	+		24821	11112	14316	14728							0.011215229720392017
SPSPQAALP	9	Unmodified						0	0	0			REV__nc|ENSG00000196588|Q969V6|MRTFA	REV__nc|ENSG00000196588|Q969V6|MRTFA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	867.457059	866.449782	1.8973	0.0016458	-1.9282	-0.0016726	-0.030891	-2.6797E-05	867.4560779669637	19.082	0.096148	19.068	19.044	19.14	-0.014059	459	34	1.3464937	0.019695759	1.3449743	273.9532		4.0072327	0.0037685	-6.772E-05	0.0010309	NaN	39.459	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4261.4	+		24822	11112	14316	14728							0.011215229720392017
SPSPSDPVL	9	Unmodified	_SPSPSDPVL_					0	0	0		ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	ENST00000486146.2_1_2:231068050-231077551:-|nuORF	ENST00000486146.2_1_2:231068050-231077551:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.4516388672001	1	898.451639	897.444362	1.5684	0.0014092	-0.55391	-0.00049767	1.0145	0.00091149	898.4514633011235	21.151	0.16863	21.151	21.079	21.248	0	414	76	1.3733286	0.04467714	1.3733286	279.26212	0	9.084991						261	8	3	NaN	NaN	NaN	0.0094682	1	6021	6021		93.472	51.687	1	41317			24823	2972	14317	14729	19743	19743					-0.008462006104196007
SPSPSLPAL	9	Unmodified	_SPSPSLPAL_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4774596871999	1	868.47746	867.470183	2.0407	0.0017723	-1.4765	-0.0012823	0.56422	0.00049001	868.4761992767574	25.515	0.12058	25.515	25.491	25.612	0	411	58	1.3751161	0.033958316	1.3751161	279.77145	0	6.908905						103	6	2	NaN	NaN	NaN	0.094712	1	5633	5633		36.586	5.0254	1	7437.5			24824	5140	14318	14730	19744	19744					0.031146936318464213
SPSPSLPAL	9	Unmodified	_SPSPSLPAL_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4774596871999	1	868.47746	867.470183	1.8832	0.0016355	0.0058794	5.1061E-06	1.8891	0.0016406	868.4778527888732	25.539	0.096516	25.528	25.455	25.552	-0.0116	408	55	1.3769034	0.032165885	1.375384	280.13507	0	6.5442505						101	5	2	NaN	NaN	NaN	0.021105	1	5492	5492		70.6	0	1	8015.2			24825	5140	14318	14730	19745	19745					0.031146936318464213
SPSQDFSF	8	Unmodified	_SPSQDFSF_					0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000427750.2_1_11:57068016-57070427:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.3890386104001	1	914.389039	913.381762	1.9489	0.001782	0.192	0.00017556	2.1409	0.0019576	914.3897475959395	23.778	0.096306	23.778	23.778	23.875	0	381	31	1.3929803	0.017852902	1.3929803	283.18356	0	3.629364						61	5	2	NaN	NaN	NaN	0.67661	1	6290	6290		20.513	1.3497	1	3455.7			24826	3658	14319	14731	19746	19746					-0.07839346678599668
SPSQDFSF	8	Unmodified						0	0	0		TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000427750.2_1_11:57068016-57070427:-|nuORF	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	914.389039	913.381762	2.4666	0.0022554	-2.7739	-0.0025364	-0.30734	-0.00028103	914.385881225711	23.802	0.072338	23.789	23.765	23.837	-0.013048	381	43	1.3929803	0.024988651	1.3914609	283.1836		5.080017	0.0053653	-0.001608	-0.00075972	NaN	20.513	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3659.9			24827	3658	14319	14731							-0.07839346678599668
SPSQMNGYSSL	11	Unmodified	_SPSQMNGYSSL_					0	0	0		ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-16|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-14|ANK1	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.84137246160003	3	390.841372	1169.50229	1.5384	0.00060129	5.2121	0.0020371	6.7506	0.0026384	390.84348180872763	30.172	0.14477	30.166	30.166	30.311	-0.0064106	1506	25	0.70979416	0.014873028	0.7082747	431.4704	0	9.041046						62	7	2	NaN	NaN	NaN	0.75376	1	14922	14922		2.789	0.89893	1	4024			24828	488	14320	14732	19747	19747					-0.07568306747293718
SPSQPIMSQYW	11	Unmodified	_SPSQPIMSQYW_					0	0	0			REV__nc|ENSG00000184588|Q07343-4|PDE4B	REV__nc|ENSG00000184588|Q07343-4|PDE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.3055378272	2	662.305538	1322.59652	0.59707	0.00039544	2.8085	0.0018601	3.4056	0.0022556	662.3079803286278	38.372	0.12009	38.372	38.324	38.444	0	1095	61	0.9625867	0.036651254	0.9625867	389.5692	0	14.833191						151	6	3	NaN	NaN	NaN	0.66717	1	19141	19141		9.6116	1.3341	1	10373	+		24829	10931	14321	14733	19748	19748					-0.051871679251689784
SPSSPDFVF	9	Unmodified	_SPSSPDFVF_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4516388672001	1	982.451639	981.444362	1.9203	0.0018866	-0.037503	-3.6845E-05	1.8828	0.0018498	982.4522188011587	27.881	0.14478	27.881	27.857	28.001	0	282	76	1.4517976	0.044459105	1.4517976	294.83667	0	9.028961						135	7	2	NaN	NaN	NaN	0.29681	1	7926	7926		19.118	5.3813	1	11932			24830	982	14322	14734	19749	19749					-0.04710200610418269
SPSSPDFVF	9	Unmodified	_SPSSPDFVF_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4516388672001	1	982.451639	981.444362	1.6253	0.0015968	-0.044181	-4.3405E-05	1.5811	0.0015534	982.4522867118329	27.88	0.096558	27.87	27.846	27.943	-0.009552	360	40	1.405474	0.02319014	1.4039545	285.42908	0	4.709564						78	5	2	NaN	NaN	NaN	0.16171	1	7751	7751		27.789	10.009	1	7065.9			24831	982	14322	14734	19750	19750					-0.04710200610418269
SPSSPDFVF	9	Unmodified	_SPSSPDFVF_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4516388672001	1	982.451639	981.444362	1.4681	0.0014424	0.73764	0.0007247	2.2058	0.0021671	982.4528875914355	27.88	0.096558	27.87	27.846	27.943	-0.009552	279	82	1.4535767	0.048015952	1.4520572	295.19797	0	9.751282						135	5	2	NaN	NaN	NaN	0.036546	1	7752	7752		52.624	24.835	1	11506			24832	982	14322	14734	19751	19751					-0.04710200610418269
SPSSPDFVF	9	Unmodified						0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	982.451639	981.444362	1.9408	0.0019068	-0.94647	-0.00092986	0.99434	0.00097689	982.4508895546362	27.881	0.096518	27.881	27.857	27.953	0	360	49	1.405474	0.028546333	1.405474	285.4291		5.7973022	0.0051493	-0.00092175	-0.023292	NaN	52.624	96	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7201.8			24833	982	14322	14734							-0.04710200610418269
SPSSPEFFL	9	Unmodified	_SPSSPEFFL_					0	0	0		ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4829389956002	1	1010.48294	1009.47566	1.3385	0.0013526	-0.24841	-0.00025101	1.0901	0.0011016	1010.482045996357	30.004	0.072393	29.997	29.973	30.045	-0.0064106	222	94	1.4873441	0.05508256	1.4858247	301.93942	0	11.182098						150	4	3	NaN	NaN	NaN	0.04947	1	8777	8777		47.136	26.622	1	12192			24834	5862	14323	14735	19752	19752					-0.028696275763195445
SPSVDDLAL	9	Unmodified	_SPSVDDLAL_					0	0	0		ENST00000568936.1_1_15:43482505-43485079:+|nuORF;nc|ENSG00000166946|O95273-4|CCNDBP1;ENST00000566882.5_1_15:43482236-43485079:+|nuORF;nc|ENSG00000166946|O95273-3|CCNDBP1;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENST00000568936.1_1_15:43482505-43485079:+|nuORF	ENST00000568936.1_1_15:43482505-43485079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4622035535	1	916.462204	915.454927	2.1398	0.0019611	0.21115	0.00019351	2.351	0.0021546	916.4621863389227	25.853	0.16891	25.853	25.781	25.95	0	336	52	1.419741	0.030303001	1.419741	288.61414	0	6.160187						200	8	3	NaN	NaN	NaN	0.043119	1	6330	6330		49.833	14.536	1	26261			24835	4515	14324	14736	19753	19753					-0.006182179560028089
SPSVDDLAL	9	Unmodified	_SPSVDDLAL_					0	0	0		ENST00000568936.1_1_15:43482505-43485079:+|nuORF;nc|ENSG00000166946|O95273-4|CCNDBP1;ENST00000566882.5_1_15:43482236-43485079:+|nuORF;nc|ENSG00000166946|O95273-3|CCNDBP1;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENST00000568936.1_1_15:43482505-43485079:+|nuORF	ENST00000568936.1_1_15:43482505-43485079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4622035535	1	916.462204	915.454927	2.171	0.0019896	-0.37882	-0.00034717	1.7922	0.0016425	916.4616713982032	25.829	0.14482	25.817	25.793	25.938	-0.011602	333	61	1.4215236	0.035656333	1.4200041	288.9765	0	7.2484436						172	7	2	NaN	NaN	NaN	0.042816	1	6211	6211		49.961	22.172	1	26141			24836	4515	14324	14736	19754	19754					-0.006182179560028089
SPSVLVVEL	9	Unmodified	_SPSVLVVEL_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303001	1	942.550625	941.543348	1.3423	0.0012651	-1.2206	-0.0011505	0.12163	0.00011464	942.5500202375654	30.293	0.193	30.287	30.214	30.407	-0.0064106	297	118	1.4428991	0.069385886	1.4413797	293.20145	0	14.099426						397	9	3	NaN	NaN	NaN	0.062072	1	6713	6713		41.785	0	1	58803			24837	5599	14325	14737	19755	19755					0.070238223544834
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.74256504215	2	513.742565	1025.47058	1.7011	0.00087395	-3.4875	-0.0017917	-1.7864	-0.00091773	513.7401668131305	27.229	0.19304	27.229	27.157	27.35	0	1326	61	0.8209676	0.03692949	0.8209676	333.24796	0	14.990448						238	9	3	NaN	NaN	NaN	0.20577	1	9588	9588		24.961	9.7856	1	25099			24838	3637	14326	14738	19756	19756					-0.0411393143897385
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4778536176998	1	1026.47785	1025.47058	2.014	0.0020673	0.29613	0.00030397	2.3101	0.0023713	1026.4777080577514	27.229	0.26547	27.229	27.157	27.422	0	246	121	1.4731345	0.07104802	1.4731345	298.99194	0	14.420105						698	12	4	NaN	NaN	NaN	0.0034808	1	9591	9591		106.56	59.422	1	138030			24839	3637	14326	14738	19757	19757					-0.0411393143897385
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.74256504215	2	513.742565	1025.47058	0.90746	0.0004662	-0.5889	-0.00030254	0.31856	0.00016366	513.742423657352	27.253	0.24131	27.242	27.122	27.363	-0.010126	1326	58	0.8209676	0.035077274	0.81944823	333.24792	0	14.238617						255	11	3	NaN	NaN	NaN	0.094712	1	9403	9403		36.586	11.625	1	27435			24840	3637	14326	14738	19758	19758					-0.0411393143897385
SPSYPEISF	9	Unmodified	_SPSYPEISF_					0	0	0		ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000463409.6_1_10:22605382-22615407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4778536176998	1	1026.47785	1025.47058	1.3838	0.0014204	1.2196	0.0012519	2.6034	0.0026724	1026.4789533697156	27.253	0.31373	27.242	27.146	27.46	-0.010126	243	121	1.4749115	0.07099521	1.473392	299.35257	0	14.409393						485	14	3	NaN	NaN	NaN	0.013281	1	9405	9405		82.96	30.336	1	107420			24841	3637	14326	14738	19759	19759					-0.0411393143897385
SPSYSDPYL	9	Unmodified	_SPSYSDPYL_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.4571181755998	1	1028.45712	1027.44984	2.3332	0.0023996	-1.2436	-0.001279	1.0896	0.0011206	1028.4557205622211	23.103	0.19281	23.103	23.055	23.248	0	177	85	1.5139546	0.049654484	1.5139546	307.26907	0	10.077759						344	9	3	NaN	NaN	NaN	0.016254	1	9649	9649		76.739	45.178	1	44245			24842	5740	14327	14739	19760	19760					-0.06278521818626359
SPSYSDPYL	9	Unmodified	_SPSYSDPYL_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.4571181755998	1	1028.45712	1027.44984	1.6653	0.0017126	0.58818	0.00060491	2.2534	0.0023176	1028.4581044393337	23.127	0.1929	23.114	23.065	23.258	-0.013296	174	91	1.5157272	0.0532012	1.5142077	307.6288	0	10.797607						279	9	2	NaN	NaN	NaN	0.013281	1	9457	9457		82.96	44.042	1	37243			24843	5740	14327	14739	19761	19761					-0.06278521818626359
SPTDSDVSL	9	Unmodified	_SPTDSDVSL_					0	0	0		ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4207326693	1	920.420733	919.413456	1.4191	0.0013061	0.053077	4.8853E-05	1.4721	0.001355	920.4204789474296	19.659	0.19251	19.645	19.597	19.789	-0.014143	381	67	1.3929803	0.039284587	1.3914609	283.15598	0	7.985504						353	9	4	NaN	NaN	NaN	0.023828	1	6263	6263		67.154	11.661	1	52639			24844	4820	14328	14740	19762	19762					-0.049473987153191956
SPTDSDVSL	9	Unmodified						0	0	0		ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	920.420733	919.413456	1.9557	0.0018001	0.78151	0.00071932	2.7373	0.0025194	920.4215764881521	19.636	0.21613	19.636	19.612	19.828	0	384	67	1.3911947	0.039284587	1.3911947	282.79303		7.985504	-0.0043846	0.00024868	-0.00013306	NaN	67.154	329	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57933			24845	4820	14328	14740							-0.049473987153191956
SPTEIAGQKV	10	Unmodified	_SPTEIAGQKV_					0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2823886944001	2	515.282389	1028.55022	1.3436	0.00069232	-0.18359	-9.46E-05	1.16	0.00059772	515.2820767310434	19.635	0.12033	19.621	19.573	19.693	-0.014141	1296	40	0.8394264	0.02398467	0.83790696	340.7272	0	9.735504						122	6	2	NaN	NaN	NaN	0.50283	1	9525	9525		19.336	1.3667	1	14706			24846	7924	14329	14741	19763	19763					0.03709135235044414
SPTEIAGQKV	10	Unmodified						0	0	0		nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	nc|ENSG00000110046|Q2TAZ0-3|ATG2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.282389	1028.55022	1.9571	0.0010084	4.7622	0.0024539	6.7193	0.0034623	515.2852248172549	19.372	0.11997	19.372	19.324	19.444	0	1320	61	0.824661	0.036913514	0.824661	334.73383		14.983368	-0.12432	0.0040922	-0.006623	NaN	19.336	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7037			24847	7924	14329	14741							0.03709135235044414
SPTENSFTL	9	Unmodified	_SPTENSFTL_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.2376468397501	2	498.237647	994.460741	1.8225	0.00090802	-1.381	-0.00068807	0.44146	0.00021995	498.2369899398532	23.562	0.19277	23.562	23.489	23.682	0	1320	58	0.824661	0.035092473	0.824661	334.88535	0	14.250641						180	9	3	NaN	NaN	NaN	0.21199	1	8364	8364		24.562	6.7817	1	21252			24848	4811	14330	14742	19764	19764					-0.03671119444311444
SPTENSFTL	9	Unmodified	_SPTENSFTL_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4680172129002	1	995.468017	994.460741	2.1319	0.0021223	-0.0010692	-1.0644E-06	2.1308	0.0021212	995.4680169919757	23.562	0.19278	23.562	23.513	23.706	0	264	55	1.4624695	0.032009006	1.4624695	296.95013	0	6.4993286						188	9	3	NaN	NaN	NaN	0.017558	1	8367	8367		75.089	19.676	1	16768			24849	4811	14330	14742	19765	19765					-0.03671119444311444
SPTENSFTL	9	Unmodified	_SPTENSFTL_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.2376468397501	2	498.237647	994.460741	1.5026	0.00074864	-1.9723	-0.00098266	-0.4697	-0.00023402	498.2367790249267	23.585	0.12058	23.572	23.524	23.645	-0.013048	1320	52	0.824661	0.0313918	0.8231416	334.88535	0	12.747833						142	6	3	NaN	NaN	NaN	0.11656	1	8198	8198		33.425	2.8152	1	19147			24850	4811	14330	14742	19766	19766					-0.03671119444311444
SPTENSFTL	9	Unmodified	_SPTENSFTL_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.4680172129002	1	995.468017	994.460741	2.0321	0.0020229	-0.50554	-0.00050325	1.5265	0.0015196	995.4675947543618	23.585	0.096476	23.572	23.524	23.621	-0.013048	264	58	1.4624695	0.033781767	1.46095	296.95013	0	6.859314						131	5	2	NaN	NaN	NaN	0.026469	1	8201	8201		63.731	31.278	1	15902			24851	4811	14330	14742	19767	19767					-0.03671119444311444
SPTEPAKAE	9	Unmodified	_SPTEPAKAE_					0	0	0			REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF	REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.2323644965999	2	465.232364	928.450176	0.87327	0.00040627	-0.49987	-0.00023255	0.37341	0.00017372	465.2321697735702	12.244	0.1201	12.244	12.196	12.316	0	1332	34	0.8172735	0.02032113	0.8172735	332.20712	0	8.260162						122	6	3	NaN	NaN	NaN	0.40649	1	6551	6551		13.463	0.87517	1	14454	+		24852	9808	14331	14743	19768	19768					-0.016911020987663505
SPTFRHGQ	8	Unmodified	_SPTFRHGQ_					0	0	0			REV__ENST00000533762.5_3_1:26146491-26149771:+|nuORF	REV__ENST00000533762.5_3_1:26146491-26149771:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.2330331986	2	465.233033	928.451513	1.6129	0.0007504	-1.9839	-0.00092297	-0.37095	-0.00017258	465.2320603748992	11.836	0.50424	11.836	11.668	12.172	0	1332	52	0.8172735	0.03140533	0.8172735	332.20712	0	12.765717						733	22	3	NaN	NaN	NaN	0.76406	1	6552	6552		14.042	1.0388	1	258250	+		24853	12661	14332	14744	19769	19769					-0.015574232193330317
SPTKLDVTL	9	Unmodified	_SPTKLDVTL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.28185737815005	2	487.281857	972.549162	1.5339	0.00074745	-2.4156	-0.0011771	-0.88172	-0.00042965	487.28050609812317	21.127	0.12043	21.127	21.079	21.2	0	1356	61	0.8024889	0.036961496	0.8024889	325.9817	0	15.014252						129	6	2	NaN	NaN	NaN	0.17328	1	7686	7686		27.046	2.4844	1	22173			24854	553	14333	14745	19770	19770					0.06178920866148019
SPTKLDVTL	9	Unmodified	_SPTKLDVTL_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.28185737815005	2	487.281857	972.549162	1.1491	0.00055992	-1.339	-0.00065249	-0.18997	-9.2568E-05	487.2812660356147	21.128	0.14447	21.114	21.089	21.234	-0.014004	1356	61	0.8024889	0.03696549	0.8009695	325.9817	0	15.0159						164	7	3	NaN	NaN	NaN	0.12104	1	7536	7536		32.778	8.3778	1	24632			24855	553	14333	14745	19771	19771					0.06178920866148019
SPTPEDIVT	9	Unmodified	_SPTPEDIVT_					0	0	0		ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.4727682398001	1	958.472768	957.465492	1.2465	0.0011947	0.05632	5.3981E-05	1.3028	0.0012487	958.4726524442036	32.056	0.24129	32.056	32.008	32.249	0	297	130	1.4428991	0.07657564	1.4428991	293.13113	0	15.556671						502	11	3	NaN	NaN	NaN	0.094712	1	7268	7268		36.586	0	1	111950			24856	1542	14334	14746	19772	19772					-0.014942353015612753
SPTQKEKIW	9	Unmodified	_SPTQKEKIW_					0	0	0		tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.8060309662001	2	558.806031	1115.59751	1.6714	0.00093399	-4.7429	-0.0026503	-3.0715	-0.0017163	558.8019891325296	19.636	0.072023	19.636	19.612	19.684	0	1260	43	0.8615505	0.025794804	0.8615505	349.34695	0	10.459412						88	4	3	NaN	NaN	NaN	0.21199	1	13510	13510		24.562	1.4762	1	7282.1			24857	13982	14335	14747	19773	19773					0.04433414506047484
SPTQKEKIW	9	Unmodified						0	0	0		tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.806031	1115.59751	1.7386	0.00097154	-5.6928	-0.0031812	-3.9542	-0.0022096	558.8036906946538	19.635	0.072256	19.621	19.597	19.669	-0.014141	1257	37	0.86339295	0.022107422	0.8618735	350.094		8.964264	-0.0076658	-0.00051065	0.00016147	NaN	24.562	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6157			24858	13982	14335	14747							0.04433414506047484
SPTWDDPTL	9	Unmodified	_SPTWDDPTL_					0	0	0		ENSG00000170412|ENST00000392627|GPRC5C;nc|ENSG00000170412|Q9NQ84-2|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.4680172129	1	1031.46802	1030.46074	1.7727	0.0018284	0.19976	0.00020605	1.9724	0.0020345	1031.4674505941146	25.105	0.12063	25.105	25.057	25.178	0	273	67	1.4571344	0.039117813	1.4571344	295.7255	0	7.938965						184	6	3	NaN	NaN	NaN	0.00020136	1	9784	9784		116.74	77.277	1	20899			24859	4725	14336	14748	19774	19774					-0.053271194443368586
SPTWDDPTL	9	Unmodified	_SPTWDDPTL_					0	0	0		ENSG00000170412|ENST00000392627|GPRC5C;nc|ENSG00000170412|Q9NQ84-2|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.4680172129	1	1031.46802	1030.46074	1.5369	0.0015853	0.41563	0.00042871	1.9525	0.002014	1031.4684129864918	25.105	0.14475	25.093	25.045	25.189	-0.012011	273	55	1.4571344	0.032012343	1.4556149	295.7255	0	6.496887						203	7	3	NaN	NaN	NaN	0.055351	1	9585	9585		44.638	25.475	1	20539			24860	4725	14336	14748	19775	19775					-0.053271194443368586
SPVADWSEL	9	Unmodified	_SPVADWSEL_					0	0	0		BICD2-IPPK|1|fusion;ENSG00000127080|ENST00000287996|IPPK	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4731025908001	1	1003.4731	1002.46583	1.6183	0.001624	0.92788	0.0009311	2.5462	0.0025551	1003.473744177033	26.915	0.16889	26.915	26.891	27.06	0	264	94	1.4624695	0.055111766	1.4624695	296.9177	0	11.189056						412	8	3	NaN	NaN	NaN	0.0062755	1	8682	8682		99.986	47.362	1	69597			24861	66	14337	14749	19776	19776					-0.03530815581711977
SPVADWSEL	9	Unmodified	_SPVADWSEL_					0	0	0		BICD2-IPPK|1|fusion;ENSG00000127080|ENST00000287996|IPPK	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4731025908001	1	1003.4731	1002.46583	1.3741	0.0013789	0.28705	0.00028805	1.6612	0.001667	1003.4729064822945	26.939	0.1448	26.928	26.88	27.025	-0.010645	261	79	1.4642475	0.046235085	1.462728	297.2787	0	9.386871						240	7	2	NaN	NaN	NaN	0.0094682	1	8506	8506		93.472	40.848	1	55741			24862	66	14337	14749	19777	19777					-0.03530815581711977
SPVAKDVDL	9	Unmodified	_SPVAKDVDL_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.25838228184995	2	472.258382	942.502212	1.5778	0.00074514	-0.6098	-0.00028798	0.96802	0.00045715	472.2571684331705	17.501	0.095825	17.501	17.477	17.573	0	1335	52	0.8154261	0.031412125	0.8154261	331.38412	0	12.765717						130	5	3	NaN	NaN	NaN	0.37272	1	6882	6882		14.854	2.8053	1	13120			24863	4392	14338	14750	19778	19778					0.028660613149895653
SPVASDMTL	9	Unmodified	_SPVASDMTL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4393596214001	1	920.43936	919.432083	1.8844	0.0017345	-1.0827	-0.0009966	0.80163	0.00073785	920.4383363438883	22.766	0.072371	22.766	22.718	22.79	0	348	61	1.412609	0.035675287	1.412609	287.1459	0	7.251831						124	4	3	NaN	NaN	NaN	0.39244	1	6398	6398		14.042	6.5012	1	8736.4			24864	471	14339	14751	19779	19779					-0.030855603451186653
SPVASDMTL	9	Unmodified	_SPVASDMTL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4393596214001	1	920.43936	919.432083	1.4375	0.0013231	-0.33639	-0.00030963	1.1011	0.0010135	920.4396519836723	22.766	0.096363	22.752	22.728	22.824	-0.01354	348	49	1.412609	0.028537154	1.4110895	287.1459	0	5.8008423						90	5	2	NaN	NaN	NaN	0.13602	1	6265	6265		30.61	16.569	1	8693.7			24865	471	14339	14751	19780	19780					-0.030855603451186653
SPVGLFELF	9	Unmodified	_SPVGLFELF_					0	0	0		ENSG00000185220|ENST00000329291|PGBD2	ENSG00000185220|ENST00000329291|PGBD2	ENSG00000185220|ENST00000329291|PGBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5400599440002	1	1008.54006	1007.53278	1.0074	0.001016	3.0865	0.0031129	4.0939	0.0041289	1008.5432347143927	37.747	0.096191	37.747	37.747	37.843	0	189	46	1.5068626	0.02660203	1.5068626	305.90973	0	5.400482						66	5	2	NaN	NaN	NaN	0.49672	1	8891	8891		9.746	2.2056	1	4077.8			24866	5399	14340	14752	19781	19781					0.02931839700056571
SPVGSEISM	9	Oxidation (M)	_SPVGSEISM(Oxidation (M))_		SPVGSEISM(1)		SPVGSEISM(100)	0	0	1		nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.4186241793001	1	922.418624	921.411348	1.8859	0.0017396	-5.0252	-0.0046353	-3.1393	-0.0028957	922.4142836930463	16.662	0.12003	16.662	16.638	16.758	0	393	64	1.3858368	0.037516832	1.3858368	281.69492	0	7.625946						196	6	3	NaN	NaN	NaN	0.0062755	1	6428	6428		99.986	50.153	1	15866			24867	883	14341	14753	19782	19782		96			-0.05250150724782543
SPVGSEISM	9	Oxidation (M)	_SPVGSEISM(Oxidation (M))_		SPVGSEISM(1)		SPVGSEISM(83)	0	0	1		nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4186241793001	1	922.418624	921.411348	1.5293	0.0014107	-2.9825	-0.0027511	-1.4531	-0.0013404	922.4157480015074	16.658	0.1678	16.645	16.597	16.765	-0.013294	393	67	1.3858368	0.039297104	1.3843174	281.69492	0	7.9878235						193	8	3	NaN	NaN	NaN	0.013281	1	6306	6306		82.96	41.176	1	17894			24868	883	14341	14753	19783	19783		96			-0.05250150724782543
SPVGSEISM	9	Unmodified	_SPVGSEISM_					0	0	0		nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	nc|ENSG00000078403|P55197-1|MLLT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4237095572	1	906.42371	905.416433	1.9128	0.0017338	2.1781	0.0019743	4.0909	0.0037081	906.4259986335766	21.272	0.12023	21.258	21.258	21.378	-0.014004	387	52	1.389409	0.030361176	1.3878895	282.49442	0	6.173004						121	6	3	NaN	NaN	NaN	0.10956	1	6048	6048		34.439	8.3238	1	12574			24869	883	14341	14754	19784	19784					-0.04005846862162343
SPVLEQSTL	9	Unmodified	_SPVLEQSTL_					0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	973.5200527834	1	973.520053	972.512776	1.9922	0.0019394	-0.18624	-0.00018131	1.806	0.0017581	973.51972164581	22.645	0.072378	22.645	22.621	22.694	0	312	79	1.433996	0.0462842	1.433996	291.25848	0	9.400787						126	4	2	NaN	NaN	NaN	0.35794	1	7681	7681		15.463	0	1	11307			24870	4661	14342	14755	19785	19785					0.025420439694244124
SPVLVARPHN	10	Unmodified	_SPVLVARPHN_					0	0	0			REV__nc|ENSG00000100422|Q8TCT0-2|CERK	REV__nc|ENSG00000100422|Q8TCT0-2|CERK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3118148358501	2	545.311815	1088.60908	1.3305	0.00072552	6.6271	0.0036139	7.9576	0.0043394	545.3152196504607	30.56	0.12063	30.56	30.463	30.584	0	1146	91	0.93142134	0.05505407	0.93142134	377.7928	0	22.330414						249	6	3	NaN	NaN	NaN	0.76892	1	12347	12347		3.2116	1.0353	1	81109	+		24871	8818	14343	14756	19786	19786					0.06831656320036927
SPVLVARPHN	10	Unmodified						0	0	0			REV__nc|ENSG00000100422|Q8TCT0-2|CERK	REV__nc|ENSG00000100422|Q8TCT0-2|CERK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	545.311815	1088.60908	1.3305	0.00072552	6.6271	0.0036139	7.9576	0.0043394	545.3152196504607	30.56	0.12063	30.56	30.463	30.584	0	1146	91	0.93142134	0.05505407	0.93142134	377.7928		22.330414	0.003385	-0.0005068	-0.0001577	NaN	3.2116	249	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81109	+		24872	8818	14343	14756							0.06831656320036927
SPVLVARPHN	10	Unmodified						0	0	0			REV__nc|ENSG00000100422|Q8TCT0-2|CERK	REV__nc|ENSG00000100422|Q8TCT0-2|CERK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.311815	1088.60908	1.1178	0.00060952	7.5103	0.0040955	8.6281	0.004705	545.8177115979942	30.559	0.16891	30.553	30.408	30.577	-0.0057564	1143	82	0.9332562	0.04952991	0.93173677	378.53702		20.089783	-0.003385	0.00045644	0.0001577	NaN	3.2116	222	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63949	+		24873	8818	14343	14756							0.06831656320036927
SPVSDVSYM	9	Unmodified	_SPVSDVSYM_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4342742435001	1	984.434274	983.426998	2.0378	0.0020061	-0.23528	-0.00023161	1.8025	0.0017745	984.4349667116846	22.187	0.16888	22.187	22.139	22.308	0	279	52	1.4535767	0.030245066	1.4535767	295.18973	0	6.1421204						164	8	3	NaN	NaN	NaN	0.025843	1	7993	7993		64.55	34.952	1	14767			24874	2723	14344	14757	19787	19787					-0.06537864207723487
SPVSDVSYM	9	Unmodified	_SPVSDVSYM_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4342742435001	1	984.434274	983.426998	1.479	0.001456	0.214	0.00021067	1.693	0.0016666	984.4341561623996	22.187	0.14474	22.173	22.125	22.27	-0.013731	279	61	1.4535767	0.035573006	1.4520572	295.18973	0	7.224121						139	7	2	NaN	NaN	NaN	0.094712	1	7819	7819		36.586	18.787	1	14292			24875	2723	14344	14757	19788	19788					-0.06537864207723487
SPVSDVSYM	9	Oxidation (M)	_SPVSDVSYM(Oxidation (M))_		SPVSDVSYM(1)		SPVSDVSYM(58)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4291888656002	1	1000.42919	999.421912	2.4049	0.0024059	-1.5567	-0.0015574	0.84815	0.00084852	1000.4269783827297	18.268	0.11986	18.268	18.245	18.364	0	300	61	1.4411188	0.0356071	1.4411188	292.5951	0	7.229431						172	6	3	NaN	NaN	NaN	0.030669	1	8549	8549		58.235	39.117	1	14591			24876	2723	14344	14758	19789	19789		315			-0.07782168070343687
SPVSDVSYM	9	Oxidation (M)	_SPVSDVSYM(Oxidation (M))_		SPVSDVSYM(1)		SPVSDVSYM(79)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4291888656002	1	1000.42919	999.421912	2.2901	0.002291	-0.89615	-0.00089654	1.3939	0.0013945	1000.4286361412488	18.29	0.14401	18.276	18.228	18.372	-0.01395	297	58	1.4428991	0.03382492	1.4413797	292.95654	0	6.867584						180	7	3	NaN	NaN	NaN	0.01452	1	8363	8363		79.199	58.643	1	16165			24877	2723	14344	14758	19790	19790		315			-0.07782168070343687
SPVTQEPEL	9	Unmodified	_SPVTQEPEL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.25329690395	2	500.253297	998.492041	1.7096	0.00085523	-0.20535	-0.00010273	1.5042	0.0007525	500.25306527857043	20.694	0.26517	20.694	20.646	20.911	0	1335	94	0.8154261	0.057243824	0.8154261	331.11694	0	23.244781						751	12	5	NaN	NaN	NaN	0.01452	1	8519	8519		79.199	14.649	1	213270			24878	3424	14345	14759	19791	19791					-0.007265464102374608
SPVTQEPEL	9	Unmodified	_SPVTQEPEL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.4993173413001	1	999.499317	998.492041	1.7083	0.0017074	0.11095	0.0001109	1.8192	0.0018183	999.4993918700981	20.718	0.19278	20.718	20.646	20.838	0	285	82	1.4500183	0.048036337	1.4500183	294.4057	0	9.753082						362	9	3	NaN	NaN	NaN	0.0050453	1	8520	8520		102.5	60.178	1	54857			24879	3424	14345	14759	19792	19792					-0.007265464102374608
SPVTQEPEL	9	Unmodified	_SPVTQEPEL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.25329690395	2	500.253297	998.492041	1.191	0.00059583	0.18721	9.3653E-05	1.3783	0.00068948	500.25355206106747	20.694	0.265	20.68	20.584	20.849	-0.014088	1335	88	0.8154261	0.05355066	0.81390667	331.1169	0	21.745117						676	12	4	NaN	NaN	NaN	0.048656	1	8338	8338		47.482	0	1	201630			24880	3424	14345	14759	19793	19793					-0.007265464102374608
SPVTQEPEL	9	Unmodified	_SPVTQEPEL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.4993173413001	1	999.499317	998.492041	1.3198	0.0013191	0.33631	0.00033614	1.6561	0.0016552	999.500105221464	20.718	0.16874	20.704	20.632	20.801	-0.014086	285	97	1.4500183	0.056941032	1.4484988	294.4057	0	11.561066						348	8	3	NaN	NaN	NaN	0.0042638	1	8339	8339		104.2	57.063	1	54579			24881	3424	14345	14759	19794	19794					-0.007265464102374608
SPVWQDQIL	9	Unmodified	_SPVWQDQIL_					0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5625863001	1	1085.56259	1084.55531	1.8261	0.0019824	2.5876	0.002809	4.4137	0.0047914	1085.5665045814726	28.267	0.072414	28.267	28.243	28.315	0	117	115	1.5493695	0.06720269	1.5493695	314.23737	0	13.629791						210	4	2	NaN	NaN	NaN	0.034172	1	12172	12172		53.652	27.537	1	19113			24882	5550	14346	14760	19795	19795					0.016414390976706272
SPVWQDQIL	9	Unmodified	_SPVWQDQIL_					0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2849313833501	2	543.284931	1084.55531	1.138	0.00061824	0.31809	0.00017281	1.4561	0.00079105	543.2851091138697	28.29	0.14476	28.281	28.209	28.354	-0.0089779	1272	88	0.854179	0.053417623	0.8526596	346.47882	0	21.667664						286	7	3	NaN	NaN	NaN	0.042816	1	11854	11854		49.961	22.172	1	36259			24883	5550	14346	14760	19796	19796					0.016414390976706272
SPVWQDQIL	9	Unmodified	_SPVWQDQIL_					0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5625863001	1	1085.56259	1084.55531	1.1074	0.0012022	4.062	0.0044095	5.1694	0.0056117	1085.567413140638	28.29	0.072386	28.281	28.257	28.33	-0.0089779	141	112	1.5352125	0.06543076	1.5336931	311.36612	0	13.270416						212	4	2	NaN	NaN	NaN	0.29341	1	11857	11857		19.336	0.17285	1	17932			24884	5550	14346	14760	19797	19797					0.016414390976706272
SPVWQDQIL	9	Unmodified						0	0	0		ENST00000487515.1_1_X:85233742-85236764:-|nuORF;nc|ENSG00000188419|P24386-2|CHM;ENSG00000188419|ENST00000357749|CHM	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	ENST00000487515.1_1_X:85233742-85236764:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.284931	1084.55531	1.7109	0.00092952	-0.19478	-0.00010582	1.5161	0.0008237	543.2852523462675	28.291	0.193	28.291	28.219	28.412	0	1272	88	0.854179	0.053417623	0.854179	346.47882		21.667664	0.0048441	-0.00028381	0.00075972	NaN	49.961	327	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37877			24885	5550	14346	14760							0.016414390976706272
SPWWDEVSL	9	Unmodified	_SPWWDEVSL_					0	0	0		ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5153017564999	1	1118.5153	1117.50803	1.6215	0.0018137	1.98	0.0022146	3.6015	0.0040283	1118.5183866595332	32.78	0.16889	32.78	32.732	32.9	0	99	70	1.5599792	0.04067743	1.5599792	316.27194	0	8.246979						163	8	2	NaN	NaN	NaN	0.18779	1	13569	13569		26.115	14.376	1	20232			24886	3775	14347	14761	19798	19798					-0.04602840173333789
SPWWDEVSL	9	Unmodified	_SPWWDEVSL_					0	0	0		ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.5153017564999	1	1118.5153	1117.50803	1.1228	0.0012559	0.55538	0.0006212	1.6782	0.0018771	1118.5166073024388	32.779	0.16888	32.776	32.727	32.896	-0.0031052	93	64	1.5635144	0.037136316	1.5619949	316.98868	0	7.5290527						161	8	2	NaN	NaN	NaN	0.31737	1	13168	13168		17.799	10.211	1	16854			24887	3775	14347	14761	19799	19799					-0.04602840173333789
SPYISDPAL	9	Unmodified	_SPYISDPAL_					0	0	0		ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF	ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4829389956	1	962.482939	961.475663	1.3034	0.0012545	-0.42125	-0.00040544	0.88211	0.00084902	962.4831740049588	24.188	0.12069	24.188	24.14	24.261	0	297	46	1.4428991	0.026703835	1.4428991	293.1138	0	5.4246826						86	6	2	NaN	NaN	NaN	0.31737	1	7365	7365		17.799	6.2505	1	5706.7			24888	1081	14348	14762	19800	19800					-0.006616275763349222
SPYLLSPTF	9	Unmodified	_SPYLLSPTF_					0	0	0		ENST00000420027.3_1_20:48698513-48698663:-|nuORF	ENST00000420027.3_1_20:48698513-48698663:-|nuORF	ENST00000420027.3_1_20:48698513-48698663:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5349745661001	1	1024.53497	1023.5277	2.3566	0.0024144	0.30422	0.00031168	2.6608	0.0027261	1024.5354843628215	30.342	0.21719	30.342	30.222	30.439	0	171	166	1.5174994	0.09752011	1.5174994	308.00415	0	19.793457						614	10	4	NaN	NaN	NaN	0.016254	1	9507	9507		76.739	1.0407	1	105570			24889	6905	14349	14763	19801	19801					0.016875358374363714
SPYPEAVEL	9	Unmodified	_SPYPEAVEL_					0	0	0		ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.4935036819	1	1004.4935	1003.48623	1.9136	0.0019222	0.038217	3.8389E-05	1.9519	0.0019606	1004.4924494060949	24.936	0.28959	24.936	24.791	25.081	0	288	136	1.4482387	0.07999265	1.4482387	294.02448	0	16.240265						623	13	3	NaN	NaN	NaN	0.13602	1	8718	8718		30.61	2.8213	1	93273			24890	320	14350	14764	19802	19802					-0.015376449219047572
SPYPEAVEL	9	Unmodified	_SPYPEAVEL_					0	0	0		ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.4935036819	1	1004.4935	1003.48623	1.7001	0.0017077	-0.89731	-0.00090134	0.80275	0.00080636	1004.4923418642305	24.936	0.14477	24.924	24.875	25.02	-0.012392	285	133	1.4500183	0.078219175	1.4484988	294.38574	0	15.8802185						500	7	4	NaN	NaN	NaN	0.030669	1	8544	8544		58.235	18.777	1	69867			24891	320	14350	14764	19803	19803					-0.015376449219047572
SPYPFGPMPL	10	Unmodified	_SPYPFGPMPL_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2729781010501	2	553.272978	1104.5314	1.1456	0.00063381	-5.9802	-0.0033087	-4.8346	-0.0026749	553.7702262670462	20.309	0.096188	20.309	20.261	20.357	0	1236	85	0.876284	0.05151713	0.876284	355.36462	0	20.892029						176	5	3	NaN	NaN	NaN	0.71736	1	13033	13033		6.8632	1.1691	1	17247	+		24892	13133	14351	14765	19804	19804					-0.016681176603697168
SPYSDEIVV	9	Unmodified	_SPYSDEIVV_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.488418304	1	1008.48842	1007.48114	2.3399	0.0023597	-2.5855	-0.0026074	-0.24563	-0.00024771	1008.4864938525182	24.285	0.072416	24.272	24.248	24.32	-0.012749	267	34	1.4606913	0.01955998	1.4591719	296.53668	0	3.9708862						43	4	2	NaN	NaN	NaN	0.36492	1	8704	8704		15.175	0	1	3063.6			24893	3392	14352	14766	19805	19805					-0.022299487845202748
SPYSDEIVV	9	Unmodified						0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.48842	1007.48114	1.4113	0.0014232	-3.9029	-0.0039361	-2.4917	-0.0025128	1008.4859894389556	24.285	0.048252	24.285	24.261	24.309	0	270	43	1.458913	0.024895787	1.458913	296.17566		5.054138	0.0065175	-0.00068479	-0.00012946	NaN	15.175	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5065.8			24894	3392	14352	14766							-0.022299487845202748
SQAGAPGH	8	Unmodified	_SQAGAPGH_					0	0	0		ENST00000252729.6_1_19:54503008-54515463:+|nuORF	ENST00000252729.6_1_19:54503008-54515463:+|nuORF	ENST00000252729.6_1_19:54503008-54515463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	724.3372778114001	1	724.337278	723.330001	1.4792	0.0010715	7.6412	0.0055348	9.1204	0.0066062	724.3406028847039	22.573	0.096514	22.573	22.573	22.67	0	612	70	1.2549332	0.041419983	1.2549332	256.11246	0	8.453171						126	5	2	NaN	NaN	NaN	0.81807	1	3662	3662		6.794	0	1	11294			24895	6280	14353	14767	19806	19806					-0.0427304558185142
SQAGSGSA	8	Unmodified	_SQAGSGSA_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	332.6484676916999	2	332.648468	663.282382	1.7601	0.00058551	-3.1489	-0.0010475	-1.3887	-0.00046196	332.6473932080619	34.517	0.16891	34.517	34.469	34.638	0	1527	58	0.69677675	0.03535223	0.69677675	284.87222	0	14.453522						144	8	2	NaN	NaN	NaN	0.84887	1	2408	2408		0.32989	0	1	11992	+		24896	9683	14354	14768	19807	19807					-0.06272744572720512
SQAGSGSA	8	Unmodified						0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	332.648468	663.282382	1.7601	0.00058551	-3.1489	-0.0010475	-1.3887	-0.00046196	332.6473932080619	34.517	0.16891	34.517	34.469	34.638	0	1527	58	0.69677675	0.03535223	0.69677675	284.87222		14.453522	0.00096601	-0.00054292	0.0026203	NaN	0.32989	144	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11992	+		24897	9683	14354	14768							-0.06272744572720512
SQAGSGSA	8	Unmodified						0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	332.648468	663.282382	1.5593	0.00051869	-1.2244	-0.0004073	0.33487	0.00011139	332.6467958543906	34.516	0.072372	34.515	34.491	34.563	-0.0006485	1533	67	0.6930556	0.04092753	0.6915362	283.3509		16.73294	-0.00096601	0.00073741	-0.0026203	NaN	0.32989	134	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11720	+		24898	9683	14354	14768							-0.06272744572720512
SQAGSNAE	8	Unmodified	_SQAGSNAE_					0	0	0		ENST00000297347.7_1_8:118532964-118540951:+|nuORF	ENST00000297347.7_1_8:118532964-118540951:+|nuORF	ENST00000297347.7_1_8:118532964-118540951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.3216873266999	1	763.321687	762.314411	2.3316	0.0017798	4.2941	0.0032778	6.6257	0.0050575	763.3247553153182	26.07	0.24134	26.07	26.022	26.263	0	645	121	1.2351195	0.07209253	1.2351195	251.829	0	14.69899						466	11	3	NaN	NaN	NaN	0.45125	1	4239	4239		33.698	0	1	120660			24899	6402	14355	14769	19808	19808					-0.07625376889575364
SQAIIDLL	8	Unmodified	_SQAIIDLL_					0	0	0		ZNF800|p.N114I|1|0.05|ENSG00000048405|chr7:127374995-127374995|T/A|missense_variant	ZNF800|p.N114I|1|0.05|ENSG00000048405|chr7:127374995-127374995|T/A|missense_variant	ZNF800|p.N114I|1|0.05|ENSG00000048405|chr7:127374995-127374995|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5087598156	1	872.50876	871.501483	0.92758	0.00080932	0.18378	0.00016035	1.1114	0.00096967	872.5085361281742	34.564	0.12057	34.563	34.539	34.66	-0.00064468	357	52	1.407258	0.03032887	1.4057386	286.29016	0	6.170044						165	6	3	NaN	NaN	NaN	0.070062	1	5544	5544		72.428	1.8286	1	19176			24900	14032	14356	14770	19809	19809					0.060592666659431416
SQALAKAN	8	Unmodified	_SQALAKAN_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	802.4417428829	1	802.441743	801.434466	2.0728	0.0016633	4.279	0.0034337	6.3518	0.0050969	802.4449549908181	25.322	0.24124	25.31	25.262	25.503	-0.012011	492	112	1.3267875	0.06637657	1.325268	270.2857	0	13.521881						344	11	3	NaN	NaN	NaN	0.69898	1	4672	4672		19.118	3.6556	1	66019			24901	653	14357	14771	19810	19810					0.025806561748481727
SQAQNELMN	9	Unmodified	_SQAQNELMN_					0	0	0		ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.4571349506	1	1034.45713	1033.44986	1.1209	0.0011595	-10.644	-0.011011	-9.5233	-0.0098514	1034.4462660894728	27.856	0.16896	27.846	27.798	27.967	-0.009552	216	73	1.4908947	0.042606115	1.4893752	302.56564	0	8.646576						353	8	4	NaN	NaN	NaN	0.27507	1	9701	9701		20.513	3.9292	1	68229			24902	4911	14358	14772	19811	19811					-0.06552845090254777
SQCCDCGA	8	Unmodified	_SQCCDCGA_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.221521051	1	786.221521	785.214245	-0.014982	-1.1779E-05	-0.3027	-0.00023799	-0.31769	-0.00024977	786.2205641199263	58.41	0.12002	58.41	58.29	58.41	-0.00048447	219	43	1.4891195	0.024853468	1.4876001	303.4606	0	5.064789						93	6	2	NaN	NaN	NaN	0.84887	1	4480	4480		0.32989	0	1	7637.4			24903	1016	14359	14773	19812	19812					-0.18695396810892362
SQCDAASQTVT	11	Unmodified	_SQCDAASQTVT_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.74022770595	2	555.740228	1109.4659	2.197	0.001221	-11.444	-0.0063596	-9.2465	-0.0051387	555.7339635237275	15.891	0.35926	15.879	15.735	16.094	-0.012611	1314	100	0.8283535	0.06086451	0.8268341	335.9087	0	24.681396						737	16	4	NaN	NaN	NaN	0.37105	1	12870	12870		23.086	1.2508	1	114340			24904	468	14360	14774	19813	19813					-0.08445183644016652
SQDFLREYVL	10	Unmodified	_SQDFLREYVL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3273275143001	2	635.327328	1268.6401	1.4814	0.00094117	-4.7058	-0.0029897	-3.2244	-0.0020485	635.3250003584687	27.253	0.048241	27.253	27.229	27.277	0	1116	37	0.94976085	0.021997869	0.94976085	384.5475	0	8.906708						50	3	2	NaN	NaN	NaN	0.72168	1	18206	18206		10.861	5.6725	1	5220.8			24905	3764	14361	14775	19814	19814					0.01652764843629484
SQFEEFRGSY	10	Unmodified	_SQFEEFRGSY_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.1876485773667	3	417.187649	1248.54112	1.5769	0.00065785	2.2776	0.00095019	3.8545	0.001608	417.18834933966673	18.674	0.26399	18.66	18.588	18.852	-0.014059	1443	55	0.7487872	0.033391774	0.7472678	454.83804	0	20.283264						327	12	4	NaN	NaN	NaN	0.62092	1	16989	16989		7.8039	0.12133	1	54204	+		24906	10339	14362	14776	19815	19815					-0.07321258121260144
SQFEEFRGSY	10	Unmodified						0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	417.187649	1248.54112	2.386	0.00099539	4.8364	0.0020177	7.2223	0.0030131	417.5243637762168	18.724	0.047945	18.724	18.724	18.772	0	1443	25	0.7487872	0.014835954	0.7487872	454.83804		9.011841	0.032347	0.0026862	0.00075972	NaN	7.8039	26	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2285.2	+		24907	10339	14362	14776							-0.07321258121260144
SQFEEFRGSY	10	Unmodified						0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	417.187649	1248.54112	1.5769	0.00065785	2.2776	0.00095019	3.8545	0.001608	417.18834933966673	18.674	0.26399	18.66	18.588	18.852	-0.014059	1443	55	0.7487872	0.033391774	0.7472678	454.83804		20.283264	-0.032347	-0.00051621	-0.00075972	NaN	7.8039	327	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54204	+		24908	10339	14362	14776							-0.07321258121260144
SQFSGKGG	8	Unmodified	_SQFSGKGG_					0	0	0			REV__ENST00000558014.5_1_15:47476428-47476563:+|nuORF	REV__ENST00000558014.5_1_15:47476428-47476563:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.3682435888002	1	767.368244	766.360967	1.5389	0.0011809	5.6309	0.004321	7.1698	0.0055019	767.3728786715557	28.725	0.14479	28.716	28.644	28.789	-0.0083504	540	49	1.2980826	0.028732419	1.2965631	264.64188	0	5.857727						107	7	2	NaN	NaN	NaN	0.84512	1	4227	4227		2.4615	0	1	7314.9	+		24909	10778	14363	14777	19816	19816					-0.03155892267602667
SQFSSVNQRHF	11	Unmodified	_SQFSSVNQRHF_					0	0	0			REV__ENST00000529013.1_1_9:139633979-139636150:-|nuORF	REV__ENST00000529013.1_1_9:139633979-139636150:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.82327497915	2	668.823275	1335.632	1.2266	0.00082039	-1.8401	-0.0012307	-0.61348	-0.00041031	668.8227759124379	39.935	0.048126	39.935	39.911	39.959	0	1173	19	0.91489893	0.011020303	0.91489893	370.23212	0	4.4595947						27	3	2	NaN	NaN	NaN	0.77843	1	19340	19340		0.51604	0.2859	1	1658.3	+		24910	11040	14364	14778	19817	19817					-0.022393693531512326
SQGAGTYC	8	Unmodified	_SQGAGTYC_					0	0	0		ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.3086797994	1	786.30868	785.301403	2.762	0.0021718	-2.8959	-0.0022771	-0.1339	-0.00010529	786.3037598498478	28.459	0.072426	28.451	28.403	28.475	-0.0083504	645	31	1.2351195	0.018023133	1.2336	251.69868	0	3.6728516						32	4	2	NaN	NaN	NaN	0.84756	1	4481	4481		1.072	0	1	1783.9			24911	6877	14365	14779	19818	19818					-0.09983531273314838
SQGGCVFG	8	Unmodified	_SQGGCVFG_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3188505552001	1	754.318851	753.311574	1.9734	0.0014886	-3.7453	-0.0028252	-1.7719	-0.0013366	754.3163340515838	34.998	0.024139	34.998	34.974	34.998	-4.5776E-05	687	67	1.2098682	0.039723158	1.2083488	246.73264	0	8.100876						49	2	2	NaN	NaN	NaN	0.84692	1	4040	4040		1.4396	0.36755	1	3651.3			24912	7149	14366	14780	19819	19819					-0.0749492354806307
SQKENINVL	9	Unmodified	_SQKENINVL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.7878382130501	2	522.787838	1043.56112	2.0774	0.0010861	-1.5985	-0.00083568	0.47893	0.00025038	522.7872031242296	22.718	0.048239	22.718	22.694	22.742	0	1302	25	0.8357362	0.0147637725	0.8357362	339.16492	0	5.9915466						30	3	2	NaN	NaN	NaN	0.61413	1	10364	10364		4.9097	0	1	1836.2			24913	3231	14367	14781	19820	19820					0.04108537609340601
SQKHIADDLSS	11	Unmodified	_SQKHIADDLSS_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.79639152665	2	600.796392	1199.57823	1.4475	0.00086963	-1.1041	-0.00066334	0.34336	0.00020629	600.7958824625437	23.561	0.19301	23.548	23.428	23.621	-0.013048	1239	40	0.87444305	0.023932874	0.8729236	354.27155	0	9.696136						177	9	3	NaN	NaN	NaN	0.76803	1	15813	15813		2.3381	0.1618	1	15492			24914	5369	14368	14782	19821	19821					-0.013575865755228733
SQKVETLP	8	Unmodified	_SQKVETLP_					0	0	0		ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.2530999387	2	451.2531	900.491647	1.1338	0.00051163	-0.44555	-0.00020105	0.68826	0.00031058	451.25311551448715	15.342	0.072097	15.342	15.318	15.39	0	1590	34	0.65766495	0.020509422	0.65766495	267.45007	0	8.340485						60	4	2	NaN	NaN	NaN	0.8421	1	6094	6094		3.5698	0	1	4672.4			24915	6909	14369	14783	19822	19822					0.03742078660570769
SQLNYHLLTRF	11	Unmodified	_SQLNYHLLTRF_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.5858544049666	3	464.585854	1390.73573	0.88275	0.00041011	-5.0715	-0.0023561	-4.1887	-0.001946	464.58360015202993	27.495	0.096554	27.495	27.471	27.567	0	1320	37	0.824661	0.022157669	0.824661	500.3666	0	13.444275						82	5	2	NaN	NaN	NaN	0.76251	1	19993	19993		3.3044	1.2686	1	7482.4	+		24916	10169	14370	14784	19823	19823					0.05599537754483208
SQLPPGAA	8	Unmodified	_SQLPPGAA_					0	0	0		ENSG00000011523|ENST00000377990|CEP68	ENSG00000011523|ENST00000377990|CEP68	ENSG00000011523|ENST00000377990|CEP68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	740.3937300578	1	740.39373	739.386454	1.4373	0.0010642	6.0437	0.0044748	7.481	0.0055389	740.3983995308704	27.639	0.14479	27.639	27.615	27.76	0	546	91	1.294491	0.05390799	1.294491	264.07892	0	10.997345						211	7	2	NaN	NaN	NaN	0.75561	1	3900	3900		15.175	0	1	31749			24917	412	14371	14785	19824	19824					0.006335822548066972
SQLPPGAA	8	Unmodified						0	0	0		ENSG00000011523|ENST00000377990|CEP68	ENSG00000011523|ENST00000377990|CEP68	ENSG00000011523|ENST00000377990|CEP68	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	740.39373	739.386454	1.2602	0.00093306	6.0312	0.0044655	7.2914	0.0053985	740.3980525613841	27.663	0.16888	27.653	27.605	27.774	-0.009552	546	88	1.294491	0.05210817	1.2929716	264.07892		10.630188	0.0068899	-3.9743E-06	-0.00075972	NaN	15.175	272	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34122			24918	412	14371	14785							0.006335822548066972
SQLYKAFWES	10	Unmodified	_SQLYKAFWES_					0	0	0			REV__ENSG00000164953|ENST00000453321|TMEM67	REV__ENSG00000164953|ENST00000453321|TMEM67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8087706204001	2	629.808771	1257.60299	1.5141	0.00095358	-1.208	-0.00076081	0.30608	0.00019277	629.8079479543863	24.767	0.14479	24.767	24.719	24.864	0	1116	82	0.94976085	0.04950857	0.94976085	384.5838	0	20.047363						284	7	4	NaN	NaN	NaN	0.68732	1	17942	17942		8.9191	0.67428	1	34995	+		24919	10360	14372	14786	19825	19825					-0.015509067021412193
SQPFSSLTLW	10	Unmodified	_SQPFSSLTLW_					0	0	0		ENST00000604683.1_1_5:68645870-68646032:+|nuORF	ENST00000604683.1_1_5:68645870-68646032:+|nuORF	ENST00000604683.1_1_5:68645870-68646032:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2980387586001	2	583.298039	1164.58152	1.0832	0.00063181	-2.8814	-0.0016807	-1.7982	-0.0010489	583.2961070727372	33.068	0.19287	33.066	32.945	33.138	-0.0024796	1209	49	0.892844	0.02942884	0.8913246	361.8501	0	11.926849						168	9	3	NaN	NaN	NaN	0.33935	1	14770	14770		26.115	8.1453	1	22247			24920	7778	14373	14787	19826	19826					0.005817082691464748
SQPSQEVQNKG	11	Unmodified	_SQPSQEVQNKG_					0	0	0			REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2940160132	2	601.294016	1200.57348	1.5518	0.00093312	-8.8903	-0.0053457	-7.3385	-0.0044126	601.2891609123553	34.469	0.48239	34.469	34.155	34.638	0	1221	130	0.885486	0.07904303	0.885486	358.74213	0	32.023163						1072	21	3	NaN	NaN	NaN	0.37105	1	16488	16488		23.086	2.3982	1	142980	+		24921	13226	14374	14788	19827	19827					-0.018784707182931015
SQVSMFFTHTF	11	Unmodified	_SQVSMFFTHTF_					0	0	0		HRG|p.P513S|1|0.27|ENSG00000113905|chr3:186677842-186677842|C/T|missense_variant	HRG|p.P513S|1|0.27|ENSG00000113905|chr3:186677842-186677842|C/T|missense_variant	HRG|p.P513S|1|0.27|ENSG00000113905|chr3:186677842-186677842|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.30808051615	2	666.308081	1330.60161	3.0289	0.0020182	-12.416	-0.0082728	-9.3871	-0.0062547	666.301737197015	20.068	0.024048	20.054	20.054	20.078	-0.014141	1131	28	0.94059354	0.016504645	0.93907416	380.64474	0	6.679199						28	2	2	NaN	NaN	NaN	0.76654	1	18400	18400		2.5994	0.89725	1	1990.6			24922	7819	14375	14789	19828	19828					-0.050468640625695116
SQYMDMSTGTL	11	Unmodified	_SQYMDMSTGTL_					0	0	0		tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.2599386928001	2	617.259939	1232.50532	1.1397	0.00070347	6.0015	0.0037045	7.1412	0.0044079	617.2641963878559	15.318	0.16814	15.318	15.246	15.414	0	1185	58	0.90755045	0.034910858	0.90755045	367.5729	0	14.139465						251	8	3	NaN	NaN	NaN	0.47586	1	17330	17330		19.336	0.17285	1	26406			24923	13862	14376	14790	19829	19829					-0.10162799684803758
SRAGSQHL	8	Unmodified	_SRAGSQHL_					0	0	0		MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53876285-53877059:-|nuORF;ENST00000552365.1_1_12:53874968-53878035:-|nuORF	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.4431398664	1	855.44314	854.435863	2.2747	0.0019458	-5.4279	-0.0046433	-3.1533	-0.0026974	855.4347768870839	25.998	0.14481	25.998	25.95	26.094	0	408	85	1.3769034	0.050046444	1.3769034	280.20178	0	10.18454						264	7	3	NaN	NaN	NaN	0.57691	1	5459	5459		26.732	0	1	25833			24924	3226	14377	14791	19830	19830					0.002822902636012259
SRASLGIAGP	10	Unmodified	_SRASLGIAGP_					0	0	0		PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.7641661515	2	464.764166	927.513779	1.1706	0.00054405	-1.8421	-0.00085614	-0.6715	-0.00031209	464.7631075533585	13.565	0.071909	13.555	13.555	13.627	-0.010098	1359	31	0.8006399	0.018492699	0.7991205	325.45068	0	7.5170593						61	4	2	NaN	NaN	NaN	0.62092	1	6418	6418		13.463	0.87517	1	3655.3			24925	5912	14378	14792	19831	19831					0.047123031289856954
SRASLGIAGP	10	Unmodified						0	0	0		PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	464.764166	927.513779	1.715	0.00079707	-2.0483	-0.00095197	-0.33328	-0.0001549	464.7627825439445	13.589	0.072014	13.589	13.565	13.637	0	1359	34	0.8006399	0.02034092	0.8006399	325.45068		8.268341	0.016714	-9.2822E-05	0.00075972	NaN	13.463	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3633.1			24926	5912	14378	14792							0.047123031289856954
SRATPGLQKFS	11	Unmodified	_SRATPGLQKFS_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.8875333990667	3	397.887533	1190.64077	1.5951	0.00063468	4.5632	0.0018156	6.1583	0.0024503	397.889699020695	16.734	0.095966	16.734	16.734	16.83	0	1365	25	0.7969414	0.014797449	0.7969414	484.34543	0	8.993195						52	5	2	NaN	NaN	NaN	0.71564	1	16172	16172		6.8076	1.7907	1	3172.2			24927	1813	14379	14793	19832	19832					0.05307604283325418
SRCDFTVSL	9	Unmodified	_SRCDFTVSL_					0	0	0			REV__ENST00000402364.1_1_13:23913098-23913137:-|nuORF	REV__ENST00000402364.1_1_13:23913098-23913137:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.24749163205	2	514.247492	1026.48043	1.2585	0.00064717	-8.2154	-0.0042248	-6.957	-0.0035776	514.2430607593178	22.645	0.24109	22.631	22.583	22.824	-0.01354	1335	49	0.8154261	0.029556334	0.81390667	330.99423	0	11.997406						301	11	4	NaN	NaN	NaN	0.12328	1	9428	9428		32.453	0.89171	1	75328	+		24928	12041	14380	14794	19833	19833					-0.03175066705216523
SRCDFTVSL	9	Unmodified						0	0	0			REV__ENST00000402364.1_1_13:23913098-23913137:-|nuORF	REV__ENST00000402364.1_1_13:23913098-23913137:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.247492	1026.48043	1.2585	0.00064717	-8.2154	-0.0042248	-6.957	-0.0035776	514.2430607593178	22.645	0.24109	22.631	22.583	22.824	-0.01354	1335	49	0.8154261	0.029556334	0.81390667	330.99423		11.997406	0.0049913	0.00020859	-0.00075972	NaN	32.453	301	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75328	+		24929	12041	14380	14794							-0.03175066705216523
SRCSGQELKRY	11	Unmodified	_SRCSGQELKRY_					0	0	0		ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.8327854204501	2	663.832785	1325.65102	1.9517	0.0012956	-1.553	-0.001031	0.39868	0.00026465	664.3333414403852	37.985	0.096142	37.988	37.916	38.012	0.0034256	1104	58	0.9570911	0.0348168	0.95557165	387.33588	0	14.090393						146	5	3	NaN	NaN	NaN	0.59348	1	18329	18329		14.45	1.3484	1	10507			24930	3905	14381	14795	19834	19834					0.0012184394627183792
SREEWELL	8	Unmodified	_SREEWELL_					0	0	0		ENST00000594803.1_1_19:58233776-58238980:-|nuORF;ENSG00000083814|ENST00000317398|ZNF671;ENSG00000131845|ENST00000282286|ZNF304	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	ENST00000594803.1_1_19:58233776-58238980:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2667386302	2	531.266739	1060.51892	0.22702	0.00012061	1.5357	0.00081584	1.7627	0.00093645	531.2687380374625	32.031	0.16889	32.027	31.858	32.027	-0.0037613	1281	76	0.84864825	0.04607457	0.8471288	344.33325	0	18.694427						217	8	2	NaN	NaN	NaN	0.7718	1	10871	10871		13.003	1.8325	1	21311			24931	950	14382	14796	19835	19835					-0.008914377990549838
SRFSQAPDPSG	11	Unmodified	_SRFSQAPDPSG_					0	0	0		nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.51587667296667	3	383.515877	1147.5258	1.2727	0.00048811	-7.9494	-0.0030487	-6.6767	-0.0025606	383.8458832948963	32.37	0.048248	32.37	32.345	32.394	0	1482	25	0.72465914	0.014858484	0.72465914	440.60477	0	9.034241						53	3	3	NaN	NaN	NaN	0.77466	1	14707	14707		0.33451	0	1	3308.5			24932	3285	14383	14797	19836	19836					-0.04206124918482601
SRGGAGGK	8	Unmodified	_SRGGAGGK_					0	0	0		CCDC106|p.E128K|1|0.38|ENSG00000173581|chr19:55651351-55651351|G/A|missense_variant	CCDC106|p.E128K|1|0.38|ENSG00000173581|chr19:55651351-55651351|G/A|missense_variant	CCDC106|p.E128K|1|0.38|ENSG00000173581|chr19:55651351-55651351|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3689122908	1	689.368912	688.361636	1.2785	0.00088136	5.5058	0.0037956	6.7844	0.0046769	689.3728196495462	24.502	0.12065	24.489	24.465	24.586	-0.012747	657	70	1.2279087	0.0414865	1.2263893	250.83371	0	8.474747						134	6	2	NaN	NaN	NaN	0.84562	1	2920	2920		2.1763	1.1043	1	15048			24933	79	14384	14798	19837	19837					0.00498947172093267
SRGGPGGG	8	Unmodified	_SRGGPGGG_					0	0	0		ENSG00000143621|ENST00000361891|ILF2;ENSG00000182118|ENST00000366654|FAM89A	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3110630609002	1	644.311063	643.303787	1.5699	0.0010115	7.4879	0.0048245	9.0578	0.005836	644.3158908265632	31.21	0.16895	31.205	31.157	31.326	-0.0050716	810	61	1.1356999	0.03625536	1.1341804	232.31409	0	7.4162445						161	8	3	NaN	NaN	NaN	0.84945	1	1752	1752		0	0	1	15936			24934	3441	14385	14799	19838	19838					-0.03213314753315899
SRGGPGGG	8	Unmodified						0	0	0		ENSG00000143621|ENST00000361891|ILF2;ENSG00000182118|ENST00000366654|FAM89A	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	644.311063	643.303787	1.0878	0.00070089	9.3188	0.0060042	10.407	0.0067051	644.3169135499802	31.187	0.14478	31.187	31.139	31.284	0	810	61	1.1356999	0.036267042	1.1356999	232.31409		7.41864	-0.009012	0.00052064	0.00075972	NaN	0	162	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18587			24935	3441	14385	14799							-0.03213314753315899
SRGVKGGA	8	Unmodified	_SRGVKGGA_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-4|NOS1;NOS1|p.C677Lfs*38|1|0.62|ENSG00000089250|chr12:117265424-117265425|-/C|frameshift_variant	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	731.4158624834001	1	731.415862	730.408586	0.87179	0.00063764	0.46022	0.00033661	1.332	0.00097425	731.415774175325	35.603	0.14469	35.603	35.578	35.723	0	684	37	1.2116731	0.021653295	1.2116731	247.2392	0	4.418289						79	7	2	NaN	NaN	NaN	0.84512	1	3759	3759		2.4615	0.79115	1	4819.5			24936	1036	14386	14800	19839	19839					0.0325980672323567
SRHAPAAK	8	Unmodified	_SRHAPAAK_					0	0	0			REV__ENST00000463348.5_1_6:30229165-30231201:+|nuORF	REV__ENST00000463348.5_1_6:30229165-30231201:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	837.4689606864	1	837.468961	836.461684	1.8366	0.0015381	-10.229	-0.0085664	-8.3923	-0.0070283	837.4587384931463	55.797	0.024029	55.797	55.797	55.821	0	456	49	1.348284	0.028640747	1.348284	274.47107	0	5.8303833						54	2	2	NaN	NaN	NaN	0.84756	1	5224	5224		1.072	0.67635	1	5734.9	+		24937	12277	14387	14801	19840	19840					0.03691184505885303
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.6622437689501	2	342.662244	683.309935	0.956	0.00032759	-0.6863	-0.00023517	0.2697	9.2417E-05	342.662101198427	33.504	0.072365	33.504	33.48	33.552	0	1509	46	0.70793515	0.027888477	0.70793515	289.26334	0	11.395264						77	4	2	NaN	NaN	NaN	0.84876	1	2902	2902		0.39566	0	1	8830.3		+	24938	200	14388	14802	19841	19841					-0.04438796521799304
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.6622437689501	2	342.662244	683.309935	1.7278	0.00059204	1.2698	0.0004351	2.9975	0.0010271	342.66311441994196	34.638	0.096539	34.638	34.614	34.71	0	1524	52	0.698637	0.031627536	0.698637	285.46408	0	12.923065						102	5	3	NaN	NaN	NaN	0.84945	1	2905	2905		0	0	1	5167.7		+	24939	200	14388	14802	19842	19842					-0.04438796521799304
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	684.3172110713002	1	684.317211	683.309935	1.1306	0.00077371	3.194	0.0021857	4.3246	0.0029594	684.3192807984958	34.999	0.31349	34.999	34.831	35.144	0	654	61	1.2297117	0.036061764	1.2297117	251.23824	0	7.36763						207	14	2	NaN	NaN	NaN	0.84887	1	2906	2906		0.32989	0	1	22423		+	24940	200	14388	14802	19843	19843					-0.04438796521799304
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.6622437689501	2	342.662244	683.309935	0.87369	0.00029938	5.2263	0.0017909	6.1	0.0020902	342.6641377185368	37.963	0.16819	37.963	37.915	38.083	0	1506	55	0.70979416	0.03347522	0.70979416	290.0229	0	13.67804						151	8	2	NaN	NaN	NaN	0.84945	1	2907	2907		0	0	1	12918		+	24941	200	14388	14802	19844	19844					-0.04438796521799304
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3172110713002	1	684.317211	683.309935	1.3413	0.00091788	2.5463	0.0017425	3.8876	0.0026603	684.3186820269511	34.998	0.16882	34.998	34.853	35.022	-4.5776E-05	651	55	1.2315145	0.03244865	1.229995	251.60655	0	6.629471						147	8	2	NaN	NaN	NaN	0.84887	1	2823	2823		0.32989	0	1	17015		+	24942	200	14388	14802	19845	19845					-0.04438796521799304
SRHGGGGG	8	Unmodified	_SRHGGGGG_					0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.6622437689501	2	342.662244	683.309935	1.7821	0.00061065	4.1952	0.0014375	5.9772	0.0020482	342.6639042802312	37.961	0.19229	37.964	37.94	38.132	0.0034256	1503	58	0.711653	0.035325408	0.71013355	290.7824	0	14.4339905						168	9	2	NaN	NaN	NaN	0.84945	1	2824	2824		0	0	1	12968		+	24943	200	14388	14802	19846	19846					-0.04438796521799304
SRHGGGGG	8	Unmodified						0	0	0		ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908	ENSG00000172867|ENST00000309680|KRT2	ENSG00000172867|ENST00000309680|KRT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	342.662244	683.309935	1.7157	0.00058789	-0.64267	-0.00022022	1.073	0.00036767	342.6621730240128	33.72	0.048264	33.718	33.718	33.766	-0.0018463	1515	40	0.7042165	0.024172664	0.70269704	287.74387		9.876984	0.10699	1.7693E-05	-0.0026191	NaN	0.39566	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3341.7		+	24944	200	14388	14802							-0.04438796521799304
SRIQNRMMKL	10	Unmodified	_SRIQNRMMKL_					0	0	0			REV__ENST00000533057.6_1_11:85425459-85429844:-|nuORF	REV__ENST00000533057.6_1_11:85425459-85429844:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.23740323389995	3	426.237403	1275.69038	0.91133	0.00038844	1.7185	0.00073249	2.6298	0.0011209	426.2382104149726	14.764	0.24011	14.752	14.68	14.92	-0.011738	1428	55	0.7580582	0.033373654	0.75653875	460.36252	0	20.267548						319	11	4	NaN	NaN	NaN	0.63781	1	17522	17522		12.307	4.5028	1	79443	+		24945	11975	14389	14803	19847	19847					0.06356272696098131
SRKPSWIPT	9	Unmodified	_SRKPSWIPT_					0	0	0		ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENST00000598807.1_1_19:58899504-58905010:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5945551304999	1	1071.59456	1070.58728	1.8256	0.0019563	-6.2451	-0.0066923	-4.4196	-0.004736	1071.5868704990303	28.629	0.072363	28.629	28.605	28.677	0	147	43	1.5316714	0.024787784	1.5316714	310.69888	0	5.0281982						73	4	2	NaN	NaN	NaN	0.61413	1	11598	11598		4.9097	0	1	4628.3			24946	7763	14390	14804	19848	19848					0.054808515714512396
SRKQRRWK	8	Unmodified	_SRKQRRWK_					0	0	0			REV__ENSG00000133937|ENST00000238558|GSC	REV__ENSG00000133937|ENST00000238558|GSC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.2318573602	3	382.231857	1143.67374	1.8584	0.00071035	7.2124	0.0027568	9.0709	0.0034672	382.2352550253232	21.585	0.096331	21.571	21.523	21.619	-0.013895	1404	31	0.77288127	0.018520832	0.7713618	469.94327	0	11.261444						66	5	2	NaN	NaN	NaN	0.84727	1	14117	14117		0.69115	0	1	6113.4	+		24947	9574	14391	14805	19849	19849					0.10765275916696737
SRKSGVAA	8	Unmodified	_SRKSGVAA_					0	0	0			REV__ENST00000557056.5_1_14:24800458-24802093:-|nuORF	REV__ENST00000557056.5_1_14:24800458-24802093:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.4420772339001	1	775.442077	774.434801	2.7496	0.0021321	5.0815	0.0039404	7.831	0.0060725	775.4464744133974	25.756	0.3379	25.745	25.696	26.034	-0.0116	510	175	1.316029	0.10419989	1.3145095	268.2514	0	21.239487						796	15	4	NaN	NaN	NaN	0.78546	1	4348	4348		11.17	2.0471	1	360850	+		24948	12756	14392	14806	19850	19850					0.03856075894714195
SRKWKLFP	8	Unmodified	_SRKWKLFP_					0	0	0			REV__ENST00000555044.5_2_14:74364914-74371672:+|nuORF	REV__ENST00000555044.5_2_14:74364914-74371672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3163688975002	2	531.316369	1060.61818	2.3553	0.0012514	0.18245	9.6937E-05	2.5378	0.0013484	531.8170845402262	23.103	0.048182	23.09	23.09	23.138	-0.013294	1233	31	0.87812483	0.018406928	0.8766054	356.29272	0	7.4684753						34	3	2	NaN	NaN	NaN	0.84692	1	10901	10901		1.4396	0.36755	1	2119.3	+		24949	12761	14393	14807	19851	19851					0.09030049676380258
SRMPVYPK	8	Unmodified	_SRMPVYPK_					0	0	0		ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.5236983733001	1	977.523698	976.516422	1.804	0.0017635	6.5783	0.0064305	8.3824	0.008194	977.5302761109817	28.025	0.048265	28.016	28.016	28.064	-0.0089779	630	46	1.2441287	0.027024508	1.2426093	252.6801	0	5.4886475						59	3	2	NaN	NaN	NaN	0.84756	1	7642	7642		1.072	0.14616	1	5152.9			24950	4747	14394	14808	19852	19852					0.02722435262307954
SRMPVYPK	8	Unmodified						0	0	0		ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	ENSG00000170835|ENST00000372080|CEL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	977.523698	976.516422	2.0367	0.0019909	7.3218	0.0071572	9.3584	0.0091481	977.531527154633	28.026	0.048237	28.026	28.001	28.05	0	630	64	1.2441287	0.037846565	1.2441287	252.6801		7.686569	0.0048574	0.00018489	0.00075972	NaN	1.072	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4639.5			24951	4747	14394	14808							0.02722435262307954
SRPLWNQMK	9	Unmodified	_SRPLWNQMK_					0	0	0		ENST00000505597.1_1_12:54582453-54582633:-|nuORF	ENST00000505597.1_1_12:54582453-54582633:-|nuORF	ENST00000505597.1_1_12:54582453-54582633:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.3056752129501	2	580.305675	1158.5968	2.2757	0.0013206	-10.17	-0.0059015	-7.8939	-0.0045809	580.3011956796904	25.829	0.16894	25.817	25.793	25.962	-0.011602	1185	76	0.90755045	0.045945227	0.906031	367.83258	0	18.621735						344	8	5	NaN	NaN	NaN	0.48181	1	14599	14599		10.36	1.3982	1	85723			24952	7328	14395	14809	19853	19853					0.02384296585341872
SRPPGGLV	8	Unmodified	_SRPPGGLV_					0	0	0		sp|P03222|CVC1_EBVB9Capsidvertexcomponent1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC1PE=1SV=1	sp|P03222|CVC1_EBVB9Capsidvertexcomponent1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC1PE=1SV=1	sp|P03222|CVC1_EBVB9Capsidvertexcomponent1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.4519136387003	1	782.451914	781.444637	-0.19596	-0.00015333	1.6085	0.0012586	1.4126	0.0011053	782.4530879869305	56.827	0.16812	56.826	56.754	56.922	-0.00056458	531	70	1.3034686	0.0412786	1.3019491	265.6497	0	8.412659						182	8	2	NaN	NaN	NaN	0.84727	1	4432	4432		1.2418	0	1	15894			24953	13687	14396	14810	19854	19854					0.04517263900106627
SRQTRRRRKRR	11	Unmodified	_SRQTRRRRKRR_					0	0	0		ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	ENST00000301280.9_1_19:4442242-4442314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1555.9588657626998	1	1555.95887	1554.95159	1.465	0.0022795	5.5109	0.0085748	6.976	0.010854	1556.9694216888402	39.596	0.024021	39.601	39.601	39.625	0.0053368	384	106	1.3911947	0.06243503	1.3896753	281.082	0	12.6145935						125	2	2	NaN	NaN	NaN	0.78074	1	19682	19682		0.11306	0.11306	1	19073			24954	6412	14397	14811	19855	19855					0.19631156502373415
SRQTSALNR	9	Unmodified	_SRQTSALNR_					0	0	0		ENST00000569978.1_1_16:29819442-29819613:+|nuORF	ENST00000569978.1_1_16:29819442-29819613:+|nuORF	ENST00000569978.1_1_16:29819442-29819613:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7808788482	2	516.780879	1031.5472	1.8176	0.00093929	-3.9981	-0.0020661	-2.1805	-0.0011268	516.7787460823744	29.931	0.096512	29.925	29.852	29.949	-0.0064087	1269	46	0.8560222	0.027656734	0.85450274	347.4502	0	11.225555						43	5	2	NaN	NaN	NaN	0.27608	1	9644	9644		20.449	2.6497	1	2818			24955	7643	14398	14812	19856	19856					0.03269304900891257
SRRGCGGG	8	Unmodified	_SRRGCGGG_					0	0	0		ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.3471309912003	1	749.347131	748.339855	1.6599	0.0012438	-0.86288	-0.0006466	0.79702	0.00059724	749.3463788785608	21.464	0.19288	21.45	21.402	21.595	-0.014006	1242	46	0.87260187	0.027617872	0.8710824	177.97386	0	5.6328735						163	9	3	NaN	NaN	NaN	0.84945	1	3941	3941		0	0	1	21121			24956	7265	14399	14813	19857	19857					-0.04438180848103457
SRRGCGGG	8	Unmodified						0	0	0		ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	749.347131	748.339855	1.4955	0.0011207	-0.9349	-0.00070056	0.56065	0.00042012	749.3465562173415	21.464	0.14471	21.464	21.416	21.561	0	1242	46	0.87260187	0.027620852	0.87260187	177.97386		5.633484	0.0069912	-2.8139E-05	0.00075972	NaN	0	149	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19462			24957	7265	14399	14813							-0.04438180848103457
SRSGAWEVVL	10	Unmodified	_SRSGAWEVVL_					0	0	0		ENST00000558590.1_1_14:103394982-103395396:+|nuORF	ENST00000558590.1_1_14:103394982-103395396:+|nuORF	ENST00000558590.1_1_14:103394982-103395396:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2958304206501	2	552.29583	1102.57711	1.6171	0.00089311	-8.7434	-0.0048289	-7.1263	-0.0039358	552.2890049063195	23.127	0.14473	23.114	23.09	23.234	-0.013296	1260	82	0.8615505	0.049717486	0.8600311	349.3973	0	20.162659						236	7	3	NaN	NaN	NaN	0.34693	1	12609	12609		25.801	1.2389	1	45062			24958	7583	14400	14814	19858	19858					0.029922438462335776
SRSKRRHRTV	10	Unmodified	_SRSKRRHRTV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8817929110501	2	641.881793	1281.74903	1.6003	0.0010272	-2.2679	-0.0014557	-0.6676	-0.00042852	641.8799056151809	32.537	0.072426	32.534	32.486	32.558	-0.0031052	1065	46	0.9808926	0.027439594	0.97937316	397.1086	0	11.108765						76	4	2	NaN	NaN	NaN	0.78	1	17639	17639		0.51604	0	1	8984.4			24959	4903	14401	14815	19859	19859					0.11942833377111128
SRSLIVIG	8	Unmodified	_SRSLIVIG_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.5250785818002	1	844.525079	843.517802	-0.38176	-0.00032241	1.7779	0.0015015	1.3962	0.0011791	844.526590728339	55.122	0.072041	55.121	55.073	55.145	-0.0006218	396	46	1.3840506	0.026797771	1.3825312	281.71393	0	5.4544983						74	4	2	NaN	NaN	NaN	0.84651	1	5187	5187		1.6704	0	1	5357.3	+		24960	10100	14402	14816	19860	19860					0.0897839262272555
SRSLIVIG	8	Unmodified						0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	844.525079	843.517802	-0.38176	-0.00032241	1.7779	0.0015015	1.3962	0.0011791	844.526590728339	55.122	0.072041	55.121	55.073	55.145	-0.0006218	396	46	1.3840506	0.026797771	1.3825312	281.71393		5.4544983	-0.0012921	0.00056063	0.00013354	NaN	1.6704	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5357.3	+		24961	10100	14402	14816							0.0897839262272555
SRSNVKLKS	9	Unmodified	_SRSNVKLKS_					0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.80382262825003	2	509.803823	1017.59309	1.0973	0.00055943	-0.87546	-0.00044631	0.22189	0.00011312	509.80312461333125	29.521	0.28952	29.514	29.345	29.635	-0.0070648	1260	127	0.8615505	0.07730079	0.8600311	349.75723	0	31.381226						682	13	3	NaN	NaN	NaN	0.66822	1	9109	9109		1.9246	0.6828	1	122460	+		24962	8188	14403	14817	19861	19861					0.08499950083137264
SRSNVKLKS	9	Unmodified						0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.803823	1017.59309	1.8801	0.00095847	-1.4465	-0.00073742	0.4336	0.00022105	509.8030264349278	29.522	0.21725	29.522	29.449	29.667	0	1260	145	0.8615505	0.08833426	0.8615505	349.75723		35.860382	0.0039511	-0.00023861	0.00075972	NaN	1.9246	676	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122920	+		24963	8188	14403	14817							0.08499950083137264
SRSNVKLKS	9	Unmodified						0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.803823	1017.59309	1.0973	0.00055943	-0.87546	-0.00044631	0.22189	0.00011312	509.80312461333125	29.521	0.28952	29.514	29.345	29.635	-0.0070648	1260	127	0.8615505	0.07730079	0.8600311	349.75723		31.381226	-0.0039511	0.00034361	-0.00075972	NaN	1.9246	682	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122460	+		24964	8188	14403	14817							0.08499950083137264
SRTRTSLVV	9	Unmodified	_SRTRTSLVV_					0	0	0			REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.8038226282501	2	509.803823	1017.59309	1.6798	0.00085635	-0.96535	-0.00049214	0.71442	0.00036421	509.8032772135928	28.894	0.16895	28.894	28.774	28.943	0	1248	79	0.8689189	0.04786837	0.8689189	352.7485	0	19.43274						295	8	3	NaN	NaN	NaN	0.67312	1	9291	9291		1.5054	0.57954	1	24317	+		24965	8162	14404	14818	19862	19862					0.08499950083148633
SRTRTSLVV	9	Unmodified						0	0	0			REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.803823	1017.59309	1.6798	0.00085635	-0.96535	-0.00049214	0.71442	0.00036421	509.8032772135928	28.894	0.16895	28.894	28.774	28.943	0	1248	79	0.8689189	0.04786837	0.8689189	352.7485		19.43274	0.016628	-0.00071939	0.00075972	NaN	1.5054	295	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24317	+		24966	8162	14404	14818							0.08499950083148633
SRTRTSLVV	9	Unmodified						0	0	0			REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	REV__BCORL1|p.P1218L|1|0.08|ENSG00000085185|chrX:130022942-130022942|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.803823	1017.59309	0.95709	0.00048793	0.64494	0.00032879	1.602	0.00081672	510.30546399974776	28.869	0.16895	28.861	28.789	28.958	-0.0083504	1248	52	0.8689189	0.031306982	0.86739945	352.7485		12.709473	-0.016628	0.00092246	-0.00075972	NaN	1.5054	157	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13027	+		24967	8162	14404	14818							0.08499950083148633
SRTTNTTQL	9	Unmodified	_SRTTNTTQL_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5272634263	1	1021.52726	1020.51999	1.0508	0.0010735	7.6014	0.007765	8.6522	0.0088385	1021.534330802303	31.958	0.21716	31.954	31.834	32.051	-0.0037613	159	91	1.5245869	0.053167343	1.5230675	309.45477	0	10.791718						257	10	2	NaN	NaN	NaN	0.2345	1	9201	9201		23.118	2.6689	1	57609	+		24968	8824	14405	14819	19863	19863					0.010547765698561307
SRTTNTTQL	9	Unmodified						0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1021.52726	1020.51999	2.2987	0.0023482	10.748	0.010979	13.047	0.013327	1021.5392633369679	32.201	0.048298	32.201	32.152	32.201	0	168	52	1.5192716	0.030139327	1.5192716	308.3759		6.1175537	0.1231	0.0015693	-0.0018979	NaN	23.118	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2534	+		24969	8824	14405	14819							0.010547765698561307
SRTTNTTQL	9	Unmodified						0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1021.52726	1020.51999	1.0508	0.0010735	7.6014	0.007765	8.6522	0.0088385	1021.534330802303	31.958	0.21716	31.954	31.834	32.051	-0.0037613	159	91	1.5245869	0.053167343	1.5230675	309.45477		10.791718	-0.1231	-0.0016449	0.0018979	NaN	23.118	257	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57609	+		24970	8824	14405	14819							0.010547765698561307
SRVAYTGSQ	9	Unmodified	_SRVAYTGSQ_					0	0	0		ENST00000216416.8_1_14:54897113-54898903:-|nuORF	ENST00000216416.8_1_14:54897113-54898903:-|nuORF	ENST00000216416.8_1_14:54897113-54898903:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.74343070940006	2	484.743431	967.472308	1.6368	0.00079342	-5.2302	-0.0025353	-3.5935	-0.0017419	484.7412840438781	14.933	0.1201	14.933	14.885	15.005	0	1299	34	0.8375814	0.020296931	0.8375814	340.26163	0	8.245483						80	6	2	NaN	NaN	NaN	0.6532	1	7539	7539		3.2116	0	1	6115.4			24971	6228	14406	14820	19864	19864					-0.012728776303220002
SRWCELAMALL	11	Unmodified	_SRWCELAMALL_					0	0	0			REV__PTGDR|p.L132R|1|0.12|ENSG00000168229|chr14:52268209-52268209|T/G|missense_variant	REV__PTGDR|p.L132R|1|0.12|ENSG00000168229|chr14:52268209-52268209|T/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8281258540002	2	646.828126	1291.6417	1.4576	0.00094282	-10.654	-0.0068914	-9.1966	-0.0059486	646.8227930597881	26.915	0.096512	26.915	26.867	26.964	0	1107	40	0.9552588	0.023824632	0.9552588	386.6994	0	9.64447						107	5	3	NaN	NaN	NaN	0.6875	1	18616	18616		8.2775	2.3578	1	11125	+		24972	13301	14407	14821	19865	19865					0.007543593363834589
SRWCELAMALL	11	Unmodified						0	0	0			REV__PTGDR|p.L132R|1|0.12|ENSG00000168229|chr14:52268209-52268209|T/G|missense_variant	REV__PTGDR|p.L132R|1|0.12|ENSG00000168229|chr14:52268209-52268209|T/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	646.828126	1291.6417	1.4576	0.00094282	-10.654	-0.0068914	-9.1966	-0.0059486	646.8227930597881	26.915	0.096512	26.915	26.867	26.964	0	1107	40	0.9552588	0.023824632	0.9552588	386.6994		9.64447	0.0057333	0.0012486	0.00075972	NaN	8.2775	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11125	+		24973	13301	14407	14821							0.007543593363834589
SSAAGIKG	8	Unmodified	_SSAAGIKG_					0	0	0		COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant;nc|ENSG00000188517|Q9BXS0-3|COL25A1;nc|ENSG00000188517|Q9BXS0-2|COL25A1;ENSG00000188517|ENST00000399132|COL25A1	COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3780799936001	1	690.37808	689.370804	1.8558	0.0012812	5.8598	0.0040455	7.7156	0.0053267	690.3820892021587	22.019	0.16881	22.019	21.994	22.163	0	642	55	1.2369217	0.032441616	1.2369217	252.66765	0	6.626892						154	8	2	NaN	NaN	NaN	0.8439	1	3027	3027		3.1533	0	1	14466			24974	174	14408	14822	19866	19866					0.013692957377656967
SSACPLLL	8	Unmodified	_SSACPLLL_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.4331520315001	1	803.433152	802.425876	0.87597	0.00070378	0.69186	0.00055586	1.5678	0.0012596	803.4333664051982	33.406	0.21721	33.404	33.38	33.597	-0.0018501	450	76	1.3518641	0.044743896	1.3503447	275.38846	0	9.114777						256	10	3	NaN	NaN	NaN	0.81807	1	4687	4687		6.794	1.3281	1	28853			24975	2924	14409	14823	19867	19867					0.016759662140202636
SSAEVIAQAR	10	Unmodified	_SSAEVIAQAR_					0	0	0		nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555|DPYSL2	nc|ENSG00000092964|Q16555|DPYSL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2776376675	2	516.277638	1030.54072	1.8768	0.00096896	-0.93179	-0.00048106	0.94503	0.0004879	516.2773603627321	14.261	0.096112	14.261	14.237	14.333	0	1341	82	0.8117308	0.049852133	0.8117308	329.47702	0	20.23471						107	5	2	NaN	NaN	NaN	0.5358	1	9808	9808		17.97	7.3647	1	10664			24976	1106	14410	14824	19868	19868					0.026673669495039576
SSAEVIAQAR	10	Unmodified						0	0	0		nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555|DPYSL2	nc|ENSG00000092964|Q16555|DPYSL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.277638	1030.54072	1.3387	0.00069114	-1.6675	-0.00086087	-0.32876	-0.00016973	516.2769374717761	14.261	0.095833	14.249	14.225	14.321	-0.011219	1338	49	0.81357855	0.029553175	0.8120591	330.22702		11.995483	-0.0059392	-0.00046118	0.00016417	NaN	17.97	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8152.2			24977	1106	14410	14824							0.026673669495039576
SSAFLIVKV	9	Unmodified	_SSAFLIVKV_					0	0	0		ENST00000585214.5_1_17:37814089-37814523:+|nuORF;ENST00000583582.5_1_17:37814089-37814321:+|nuORF;ENST00000544210.6_1_17:37814089-37815307:+|nuORF;ENST00000582874.1_1_17:37809793-37814734:+|nuORF;ENST00000488876.5_1_17:37809763-37814321:+|nuORF;ENST00000484773.6_1_17:37809763-37814894:+|nuORF;ENSG00000131748|ENST00000336308|STARD3	ENST00000585214.5_1_17:37814089-37814523:+|nuORF	ENST00000585214.5_1_17:37814089-37814523:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.5873444876001	1	963.587344	962.580068	1.4805	0.0014266	7.6838	0.007404	9.1643	0.0088306	963.5944010853273	35.312	0.072479	35.312	35.287	35.36	-4.5776E-05	207	43	1.496219	0.024842978	1.4946996	303.94037	0	5.04657						53	4	2	NaN	NaN	NaN	0.47587	1	7261	7261		10.605	3.0646	1	3710.2			24978	2725	14411	14825	19869	19869					0.09728118971042932
SSAGYLHVL	9	Unmodified	_SSAGYLHVL_					0	0	0		ENST00000579315.5_1_17:16852257-16855884:-|nuORF	ENST00000579315.5_1_17:16852257-16855884:-|nuORF	ENST00000579315.5_1_17:16852257-16855884:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4992577618001	1	946.499258	945.491981	1.3989	0.0013241	-0.23407	-0.00022155	1.1649	0.0011026	946.4994520097507	26.819	0.096537	26.819	26.795	26.891	0	288	79	1.4482387	0.04627931	1.4482387	294.26877	0	9.403534						156	5	2	NaN	NaN	NaN	0.36492	1	6962	6962		15.175	2.1725	1	23792			24979	7676	14412	14826	19870	19870					0.01705498380431436
SSAGYLHVL	9	Unmodified						0	0	0		ENST00000579315.5_1_17:16852257-16855884:-|nuORF	ENST00000579315.5_1_17:16852257-16855884:-|nuORF	ENST00000579315.5_1_17:16852257-16855884:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	946.499258	945.491981	1.2056	0.0011411	-1.0108	-0.00095667	0.19486	0.00018444	946.4983207653262	26.842	0.14478	26.832	26.759	26.904	-0.010645	285	76	1.4500183	0.044501662	1.4484988	294.63034		9.042328	0.0063252	-0.0003211	0.00013003	NaN	15.175	152	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24812			24980	7676	14412	14826							0.01705498380431436
SSAILVTVV	9	Unmodified	_SSAILVTVV_					0	0	0			REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.5400599440001	1	888.54006	887.532783	1.5205	0.001351	0.14583	0.00012958	1.6663	0.0014806	888.539017997726	33.021	0.048313	33.021	32.997	33.045	0	357	40	1.407258	0.023187757	1.407258	286.2098	0	4.7159424						41	3	2	NaN	NaN	NaN	0.27442	1	5914	5914		20.555	5.3801	1	2559.6	+		24981	12092	14413	14827	19871	19871					0.08451839700046548
SSAILVTVV	9	Unmodified						0	0	0			REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	888.54006	887.532783	1.5205	0.001351	0.14583	0.00012958	1.6663	0.0014806	888.539017997726	33.021	0.048313	33.021	32.997	33.045	0	357	40	1.407258	0.023187757	1.407258	286.2098		4.7159424	0.0018008	1.3669E-05	-0.001024	NaN	20.555	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2559.6	+		24982	12092	14413	14827							0.08451839700046548
SSAILVTVV	9	Unmodified						0	0	0			REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	REV__ENST00000417255.1_1_6:42695019-42695259:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	888.54006	887.532783	2.095	0.0018615	0.113	0.0001004	2.208	0.0019619	888.5405763102561	33.02	0.072285	33.018	32.993	33.066	-0.0024796	351	34	1.4108255	0.019618273	1.409306	286.93536		3.9899902	-0.0018008	-1.5505E-05	0.001024	NaN	20.555	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2556.8	+		24983	12092	14413	14827							0.08451839700046548
SSAKSSGA	8	Unmodified	_SSAKSSGA_					0	0	0			REV__nc|ENSG00000163539|O75122-2|CLASP2	REV__nc|ENSG00000163539|O75122-2|CLASP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3366091094001	1	694.336609	693.329333	0.79292	0.00055056	4.4884	0.0031165	5.2814	0.003667	694.3404993798746	34.154	0.1931	34.153	34.08	34.274	-0.0012474	642	58	1.2369217	0.03424585	1.2354022	252.63956	0	6.9946594						262	9	3	NaN	NaN	NaN	0.84897	1	3043	3043		0.27539	0	1	24268	+		24984	10284	14414	14828	19872	19872					-0.029598850215620587
SSAPVVVTR	9	Unmodified	_SSAPVVVTR_					0	0	0		nc|ENSG00000164916|P85037-2|FOXK1;ENSG00000164916|ENST00000328914|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.26654166495007	2	458.266542	914.51853	0.86105	0.00039459	-1.5591	-0.00071447	-0.69801	-0.00031987	458.26636834522685	14.429	0.14386	14.429	14.405	14.549	0	1371	52	0.79324204	0.031453013	0.79324204	322.51038	0	12.787903						158	7	3	NaN	NaN	NaN	0.25424	1	6316	6316		21.85	10.68	1	16499			24985	4354	14415	14829	19873	19873					0.05785187271771974
SSAPVVVTR	9	Unmodified	_SSAPVVVTR_					0	0	0		nc|ENSG00000164916|P85037-2|FOXK1;ENSG00000164916|ENST00000328914|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.26654166495007	2	458.266542	914.51853	0.88738	0.00040666	-1.0666	-0.0004888	-0.17925	-8.2142E-05	458.2659351236	14.452	0.16771	14.441	14.393	14.561	-0.011218	1371	46	0.79324204	0.027749658	0.7917226	322.51038	0	11.282227						130	8	2	NaN	NaN	NaN	0.41527	1	6198	6198		13.101	4.8109	1	17719			24986	4354	14415	14829	19874	19874					0.05785187271771974
SSASIETVA	9	Unmodified	_SSASIETVA_					0	0	0			REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	864.4309034250999	1	864.430903	863.423627	-0.37427	-0.00032353	-6.5969	-0.0057026	-6.9712	-0.0060261	864.4259221131879	53.24	0.11996	53.24	53.216	53.336	-0.00053787	369	55	1.4001206	0.032124758	1.3986012	284.87958	0	6.5363464						132	6	3	NaN	NaN	NaN	0.63698	1	5438	5438		3.9685	0	1	9350.7	+		24987	11908	14416	14830	19875	19875					-0.013547909901035382
SSASIETVA	9	Unmodified						0	0	0			REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	864.430903	863.423627	1.868	0.0016148	-8.6243	-0.0074551	-6.7563	-0.0058404	864.4246529828453	53.242	0.12014	53.242	53.218	53.338	0	375	55	1.3965509	0.032131672	1.3965509	284.15323		6.537781	0.0010416	-0.00085627	-0.0010252	NaN	3.9685	139	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11570	+		24988	11908	14416	14830							-0.013547909901035382
SSASIETVA	9	Unmodified						0	0	0			REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	REV__ENST00000486064.5_1_1:44458298-44459599:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	864.430903	863.423627	-0.37427	-0.00032353	-6.5969	-0.0057026	-6.9712	-0.0060261	864.4259221131879	53.24	0.11996	53.24	53.216	53.336	-0.00053787	369	55	1.4001206	0.032124758	1.3986012	284.87958		6.5363464	-0.0010416	0.00089631	0.0010252	NaN	3.9685	132	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9350.7	+		24989	11908	14416	14830							-0.013547909901035382
SSAVPLLASI	10	Unmodified	_SSAVPLLASI_					0	0	0		ENST00000333319.6_1_7:156432215-156432596:-|nuORF	ENST00000333319.6_1_7:156432215-156432596:-|nuORF	ENST00000333319.6_1_7:156432215-156432596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.28440006709997	2	479.2844	956.554247	1.4259	0.00068339	-0.93271	-0.00044703	0.49315	0.00023636	479.28398928524757	20.646	0.19283	20.632	20.559	20.752	-0.014086	1326	49	0.8209676	0.029553175	0.81944823	333.56573	0	12.00769						320	9	4	NaN	NaN	NaN	0.070973	1	7123	7123		49.961	6.1857	1	99377			24990	6512	14417	14831	19876	19876					0.0742322472875685
SSCDDSGD	8	Unmodified	_SSCDDSGD_					0	0	0			REV__ENST00000381151.4_2_21:35468501-35468627:+|nuORF	REV__ENST00000381151.4_2_21:35468501-35468627:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.22540368	1	785.225404	784.218127	0.046369	3.641E-05	-8.6771	-0.0068135	-8.6307	-0.0067771	785.2182860466389	57.163	0.16817	57.162	57.042	57.21	-0.00053787	219	40	1.4891195	0.023077011	1.4876001	303.4673	0	4.7028503						111	8	2	NaN	NaN	NaN	0.84887	1	4462	4462		0.32989	0	1	6608.4	+		24991	11969	14418	14832	19877	19877					-0.18261312511822325
SSCGACWE	8	Unmodified	_SSCGACWE_					0	0	0		ENST00000338820.7_1_10:74095033-74095504:-|nuORF	ENST00000338820.7_1_10:74095033-74095504:-|nuORF	ENST00000338820.7_1_10:74095033-74095504:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.644013478	2	421.644013	841.273474	1.6311	0.00068775	-10.655	-0.0044925	-9.0235	-0.0038047	421.6398514234816	40.078	0.096233	40.084	40.012	40.108	0.0060463	1488	40	0.7209441	0.024143755	0.71942466	293.49338	0	9.828827						57	5	2	NaN	NaN	NaN	0.8439	1	5146	5146		3.1533	0	1	2967.4			24992	6537	14419	14833	19878	19878					-0.15351177525053572
SSDAELWSFLC	11	Unmodified	_SSDAELWSFLC_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.27644603675	2	629.276446	1256.53834	2.1125	0.0013293	-3.9881	-0.0025096	-1.8757	-0.0011803	629.2755242581355	18.748	0.1439	18.748	18.652	18.796	0	1188	67	0.90571284	0.040407836	0.90571284	366.75098	0	16.362396						208	7	3	NaN	NaN	NaN	0.77378	1	17924	17924		1.3312	0	1	16923			24993	6110	14420	14834	19879	19879					-0.07966849570448176
SSDINGDLL	9	Unmodified	_SSDINGDLL_					0	0	0			REV__ENST00000570021.1_1_15:75676553-75682127:-|nuORF	REV__ENST00000570021.1_1_15:75676553-75682127:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4523671487001	1	933.452367	932.445091	1.5026	0.0014026	1.0861	0.0010138	2.5887	0.0024164	933.4542436848393	20.911	0.14455	20.911	20.838	20.983	0	354	82	1.4090419	0.048184633	1.4090419	286.36182	0	9.792633						217	7	3	NaN	NaN	NaN	0.12328	1	6654	6654		32.453	1.8426	1	23641	+		24994	10548	14421	14835	19880	19880					-0.023834059613704994
SSDPGQPVL	9	Unmodified	_SSDPGQPVL_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B;ENSG00000137393|ENST00000259939|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.4468878403001	1	899.446888	898.439611	2.0403	0.0018352	-0.8715	-0.00078387	1.1688	0.0010513	899.4460594510244	19.732	0.3363	19.732	19.588	19.924	0	390	97	1.3876231	0.05719602	1.3876231	282.16412	0	11.630432						334	15	2	NaN	NaN	NaN	0.055351	1	6036	6036		44.638	19.677	1	55600			24995	3083	14422	14836	19881	19881					-0.01367084753189829
SSDPGQPVL	9	Unmodified	_SSDPGQPVL_					0	0	0		nc|ENSG00000137393|Q7Z419-2|RNF144B;ENSG00000137393|ENST00000259939|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	nc|ENSG00000137393|Q7Z419-2|RNF144B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4468878403001	1	899.446888	898.439611	1.6838	0.0015145	-0.91845	-0.00082609	0.76533	0.00068837	899.4467663136816	19.779	0.2887	19.765	19.645	19.934	-0.014141	387	91	1.389409	0.053609848	1.3878895	282.52728	0	10.901215						459	13	3	NaN	NaN	NaN	0.02857	1	5924	5924		60.982	33.193	1	51113			24996	3083	14422	14836	19882	19882					-0.01367084753189829
SSDPLLLL	8	Unmodified	_SSDPLLLL_					0	0	0		LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|32|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4978607783002	1	857.497861	856.490584	0.99775	0.00085557	-1.1375	-0.00097541	-0.13975	-0.00011984	857.4969457512775	35.096	0.12069	35.096	35.048	35.168	0	360	67	1.405474	0.039263725	1.405474	286.00507	0	7.989929						112	6	2	NaN	NaN	NaN	0.76633	1	5494	5494		13.737	0	1	10053			24997	7865	14423	14837	19883	19883					0.05659864291669692
SSEADMEC	8	Unmodified	_SSEADMEC_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.2808100689	1	871.28081	870.273534	0.95282	0.00083017	-1.7259	-0.0015037	-0.77305	-0.00067355	871.2802921198714	33.623	0.07235	33.621	33.621	33.694	-0.0018501	504	37	1.3196158	0.021517158	1.3180964	268.46628	0	4.377533						62	4	2	NaN	NaN	NaN	0.84692	1	5521	5521		1.4396	0	1	3881.3			24998	2268	14424	14838	19884	19884					-0.16679222315713105
SSEDLLVVE	9	Unmodified	_SSEDLLVVE_					0	0	0			REV__ENST00000483450.1_1_6:28967726-28971743:-|nuORF	REV__ENST00000483450.1_1_6:28967726-28971743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.75312972845006	2	495.75313	989.491707	1.5188	0.00075297	-1.2406	-0.00061505	0.27821	0.00013792	495.7527998914318	15.604	0.071916	15.592	15.568	15.64	-0.012201	1332	43	0.8172735	0.025864601	0.81575406	331.9081	0	10.504059						96	4	3	NaN	NaN	NaN	0.47587	1	8022	8022		10.605	0.24481	1	9059.2	+		24999	11165	14425	14839	19885	19885					-0.003459661300780681
SSEEKCSAVSW	11	Unmodified	_SSEEKCSAVSW_					0	0	0		MAP3K4|p.E744Kfs*16|1|0.17|ENSG00000085511|chr6:161081012-161081012|A/-|frameshift_variant;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENSG00000085511|ENST00000392142|MAP3K4	MAP3K4|p.E744Kfs*16|1|0.17|ENSG00000085511|chr6:161081012-161081012|A/-|frameshift_variant	MAP3K4|p.E744Kfs*16|1|0.17|ENSG00000085511|chr6:161081012-161081012|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.76370280225	2	606.763703	1211.51285	1.6452	0.00099828	-9.2127	-0.0055899	-7.5674	-0.0045916	606.7578317275611	26.36	0.16893	26.36	26.312	26.481	0	1176	70	0.9130621	0.04224682	0.9130621	369.87625	0	17.113953						315	8	4	NaN	NaN	NaN	0.47586	1	16753	16753		19.336	1.3667	1	37703			25000	970	14426	14840	19886	19886					-0.08444324092874922
SSEKFSFC	8	Unmodified	_SSEKFSFC_					0	0	0		ENST00000463882.1_1_2:179314855-179315757:-|nuORF	ENST00000463882.1_1_2:179314855-179315757:-|nuORF	ENST00000463882.1_1_2:179314855-179315757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.70238563665004	2	467.702386	933.390218	0.24835	0.00011615	6.6652	0.0031173	6.9136	0.0032335	467.7071171292261	35.046	0.16891	35.046	34.998	35.167	-4.5776E-05	1383	55	0.7858409	0.033319414	0.7843215	319.40564	0	13.542725						136	8	3	NaN	NaN	NaN	0.80692	1	6532	6532		8.2903	2.2	1	10479			25001	7093	14427	14841	19887	19887					-0.07914116033634855
SSEVPQISPQ	10	Unmodified	_SSEVPQISPQ_					0	0	0		nc|ENSG00000187605|O43151-3|TET3;nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-3|TET3	nc|ENSG00000187605|O43151-3|TET3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5316801022	1	1071.53168	1070.5244	1.6174	0.0017331	-1.6588	-0.0017774	-0.041359	-4.4317E-05	1071.5293195081983	15.508	0.14379	15.496	15.448	15.592	-0.012202	165	55	1.5210435	0.031897068	1.5195241	308.54324	0	6.4703064						154	7	2	NaN	NaN	NaN	0.5917	1	11283	11283		15.463	2.4598	1	14454			25002	5511	14428	14842	19888	19888					-0.008037590072262901
SSFDLDYDF	9	Unmodified	_SSFDLDYDF_					0	0	0		ENST00000525816.1_1_11:84732145-84732388:-|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000525816.1_1_11:84732145-84732388:-|nuORF	ENST00000525816.1_1_11:84732145-84732388:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.4469474198	1	1108.44695	1107.43967	1.9005	0.0021066	1.9618	0.0021746	3.8623	0.0042811	1108.4467563319647	29.86	0.096531	29.86	29.836	29.932	0	96	49	1.5617468	0.028280854	1.5617468	316.66547	0	5.734314						113	5	3	NaN	NaN	NaN	0.16171	1	13151	13151		27.789	9.9898	1	12959			25003	1090	14429	14843	19889	19889					-0.10975129543840012
SSFDLDYDF	9	Unmodified	_SSFDLDYDF_					0	0	0		ENST00000525816.1_1_11:84732145-84732388:-|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000525816.1_1_11:84732145-84732388:-|nuORF	ENST00000525816.1_1_11:84732145-84732388:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.4469474198	1	1108.44695	1107.43967	0.96407	0.0010686	3.5444	0.0039288	4.5085	0.0049974	1108.449057897445	29.859	0.12064	29.852	29.828	29.948	-0.0070648	99	52	1.5599792	0.030043602	1.5584598	316.30704	0	6.0917664						115	6	2	NaN	NaN	NaN	0.39244	1	12778	12778		14.042	7.1784	1	13838			25004	1090	14429	14843	19890	19890					-0.10975129543840012
SSFDMAQKR	9	Unmodified	_SSFDMAQKR_					0	0	0		nc|ENSG00000143248|O15539-2|RGS5;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-2|RGS5	nc|ENSG00000143248|O15539-2|RGS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2583906693501	2	535.258391	1068.50223	1.2798	0.00068503	-0.26888	-0.00014392	1.0109	0.00054111	535.2583801826946	12.868	0.19217	12.868	12.796	12.988	0	1245	34	0.87076044	0.020255327	0.87076044	353.27127	0	8.217621						129	9	3	NaN	NaN	NaN	0.048656	1	11482	11482		47.482	35.433	1	10976			25005	3408	14430	14844	19891	19891					-0.02928261956640199
SSFDMAQKR	9	Unmodified	_SSFDMAQKR_					0	0	0		nc|ENSG00000143248|O15539-2|RGS5;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-2|RGS5	nc|ENSG00000143248|O15539-2|RGS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2583906693501	2	535.258391	1068.50223	0.8396	0.0004494	-1.113	-0.00059572	-0.27336	-0.00014632	535.2573499343841	12.894	0.14381	12.885	12.813	12.957	-0.00947	1242	34	0.87260187	0.020255327	0.8710824	354.01834	0	8.217651						120	7	3	NaN	NaN	NaN	0.064504	1	11205	11205		40.957	22.987	1	10841			25006	3408	14430	14844	19892	19892					-0.02928261956640199
SSFFDDPVL	9	Unmodified	_SSFFDDPVL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.4778536176998	1	1026.47785	1025.47058	1.2252	0.0012577	-0.67014	-0.00068789	0.5551	0.0005698	1026.4775825695444	31.332	0.1448	31.332	31.284	31.428	0	210	112	1.4944444	0.065653086	1.4944444	303.31708	0	13.325165						369	7	3	NaN	NaN	NaN	0.14301	1	9589	9589		29.598	6.2639	1	49271			25007	3964	14431	14845	19893	19893					-0.0411393143897385
SSFFDDPVL	9	Unmodified	_SSFFDDPVL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.74256504215	2	513.742565	1025.47058	1.0462	0.00053745	-0.27486	-0.00014121	0.77129	0.00039624	513.7426299643614	31.332	0.12066	31.332	31.308	31.428	0	1293	58	0.84127116	0.03505838	0.84127116	341.48956	0	14.2309265						138	6	2	NaN	NaN	NaN	0.55027	1	9590	9590		7.5404	0	1	11672			25008	3964	14431	14845	19894	19894					-0.0411393143897385
SSFFDDPVL	9	Unmodified	_SSFFDDPVL_					0	0	0		ENSG00000157613|ENST00000621158|CREB3L1;nc|ENSG00000157613|Q96BA8-2|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	ENSG00000157613|ENST00000621158|CREB3L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.4778536176998	1	1026.47785	1025.47058	1.009	0.0010357	-1.0263	-0.0010535	-0.017379	-1.7839E-05	1026.4777317760008	31.331	0.19304	31.326	31.277	31.47	-0.0050716	207	103	1.496219	0.060333133	1.4946996	303.67725	0	12.245361						475	9	4	NaN	NaN	NaN	0.0072287	1	9402	9402		98.041	36.064	1	54355			25009	3964	14431	14845	19895	19895					-0.0411393143897385
SSFGGGVG	8	Unmodified	_SSFGGGVG_					0	0	0			REV__ENSG00000205420|ENST00000330722|KRT6A	REV__ENSG00000205420|ENST00000330722|KRT6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.15592858305	2	334.155929	666.297304	1.0673	0.00035666	4.3172	0.0014426	5.3846	0.0017993	334.1578378248947	37.771	0.21632	37.771	37.747	37.963	0	1545	88	0.68561107	0.053976357	0.68561107	280.28162	0	22.065826						407	10	4	NaN	NaN	NaN	0.84651	1	2476	2476		1.6704	0.42852	1	55093	+	+	25010	8259	14432	14846	19896	19896					-0.049192527047011936
SSFGGGVG	8	Unmodified						0	0	0			REV__ENSG00000205420|ENST00000330722|KRT6A	REV__ENSG00000205420|ENST00000330722|KRT6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	334.155929	666.297304	1.0673	0.00035666	4.3172	0.0014426	5.3846	0.0017993	334.1578378248947	37.771	0.21632	37.771	37.747	37.963	0	1545	88	0.68561107	0.053976357	0.68561107	280.28162		22.065826	-0.012135	8.1921E-06	-0.00017101	NaN	1.6704	407	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55093	+	+	25011	8259	14432	14846							-0.049192527047011936
SSFGGGVG	8	Unmodified						0	0	0			REV__ENSG00000205420|ENST00000330722|KRT6A	REV__ENSG00000205420|ENST00000330722|KRT6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	334.155929	666.297304	1.6473	0.00055047	4.2968	0.0014358	5.9441	0.0019863	334.1574035303894	37.792	0.16831	37.795	37.723	37.891	0.0028229	1542	82	0.6874725	0.050259292	0.6859531	281.0426		20.546295	0.012135	-5.4925E-06	0.00017101	NaN	1.6704	299	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52608	+	+	25012	8259	14432	14846							-0.049192527047011936
SSFINVTLEA	10	Unmodified	_SSFINVTLEA_					0	0	0		nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant;ENSG00000158555|ENST00000336898|GDPD5	nc|ENSG00000158555|Q8WTR4-5|GDPD5	nc|ENSG00000158555|Q8WTR4-5|GDPD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7822215189001	2	540.782222	1079.54989	1.5389	0.00083223	7.4347	0.0040205	8.9736	0.0048528	541.2873969457879	24.743	0.12066	24.743	24.743	24.864	0	1257	49	0.86339295	0.029479682	0.86339295	350.23657	0	11.958496						77	6	2	NaN	NaN	NaN	0.70677	1	11963	11963		7.5876	0	1	5601.8			25013	3995	14433	14847	19897	19897					0.013297155152031337
SSFIPLGHML	10	Unmodified	_SSFIPLGHML_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2917021704501	2	551.291702	1100.56885	1.5206	0.00083831	-7.2248	-0.003983	-5.7041	-0.0031446	551.2901359045632	16.949	0.071955	16.949	16.949	17.021	0	1248	61	0.8689189	0.036837757	0.8689189	352.39343	0	14.939667						76	4	2	NaN	NaN	NaN	0.77318	1	12870	12870		2.1763	0.2517	1	6440.2			25014	3833	14434	14848	19898	19898					0.022589736052623266
SSFSILGGFA	10	Unmodified	_SSFSILGGFA_					0	0	0			REV__ENSG00000174358|ENST00000304460|SLC6A19	REV__ENSG00000174358|ENST00000304460|SLC6A19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.4989234108001	1	985.498923	984.491647	1.7423	0.001717	-2.0671	-0.0020372	-0.32488	-0.00032017	985.4952016304017	29.521	0.072384	29.514	29.514	29.586	-0.0070648	282	46	1.4517976	0.026689649	1.4502782	294.82404	0	5.4200134						68	4	2	NaN	NaN	NaN	0.67523	1	7854	7854		9.746	0	1	5524	+		25015	10696	14435	14849	19899	19899					-0.0012192133942789951
SSFVFRAAAH	10	Unmodified	_SSFVFRAAAH_					0	0	0		ENST00000555611.5_1_14:77576167-77579819:+|nuORF	ENST00000555611.5_1_14:77576167-77579819:+|nuORF	ENST00000555611.5_1_14:77576167-77579819:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7828902209	2	546.78289	1091.55123	2.0902	0.0011429	5.0245	0.0027473	7.1148	0.0038902	546.7857178830433	16.251	0.14385	16.238	16.214	16.358	-0.012995	1197	34	0.9001988	0.02022028	0.8986794	365.11636	0	8.201263						93	7	2	NaN	NaN	NaN	0.70677	1	12155	12155		7.5876	1.3374	1	8473.4			25016	7570	14436	14850	19900	19900					0.009113943945976644
SSFVPSWGATA	11	Unmodified	_SSFVPSWGATA_					0	0	0		nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-3|FTCD	nc|ENSG00000160282|O95954-3|FTCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2667386302	2	555.266739	1108.51892	1.3509	0.00075012	4.1419	0.0022998	5.4928	0.00305	555.2683861439168	26.601	0.072424	26.601	26.553	26.625	0	1257	37	0.86339295	0.02211219	0.86339295	350.12125	0	8.966888						70	4	2	NaN	NaN	NaN	0.76654	1	13223	13223		2.5994	0.42311	1	6281.4			25017	4056	14437	14851	19901	19901					-0.030994377990509747
SSGANIYL	8	Unmodified	_SSGANIYL_					0	0	0		nc|ENSG00000176845|Q641Q3-2|METRNL;ENSG00000176845|ENST00000320095|METRNL	nc|ENSG00000176845|Q641Q3-2|METRNL	nc|ENSG00000176845|Q641Q3-2|METRNL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4148594304	1	824.414859	823.407583	1.1482	0.00094658	5.9622	0.0049153	7.1104	0.0058619	824.4191198031239	30.39	0.072376	30.383	30.335	30.407	-0.0064106	483	55	1.3321642	0.032255054	1.3306447	271.25897	0	6.5679016						90	4	2	NaN	NaN	NaN	0.75561	1	4946	4946		15.175	0	1	9797.2			25018	5042	14438	14852	19902	19902					-0.011184524363329729
SSGAWAAG	8	Unmodified	_SSGAWAAG_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3154797368001	1	706.31548	705.308203	3.5007	0.0024726	-7.9766	-0.005634	-4.4759	-0.0031614	706.3088252071253	26.239	0.024107	26.228	26.228	26.252	-0.011137	1026	22	1.0046607	0.012791395	1.0031413	205.13313	0	2.6117554						24	2	2	NaN	NaN	NaN	0.84876	1	3246	3246		0.39566	0	1	1125.6	+		25019	8546	14439	14853	19903	19903					-0.05623850330425739
SSGCSGSC	8	Unmodified	_SSGCSGSC_					0	0	0			REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.2072511952999	1	687.207251	686.199975	0.31758	0.00021825	-7.2473	-0.0049804	-6.9298	-0.0047622	687.2033703085348	58.626	0.095985	58.626	58.626	58.722	-0.00045776	759	40	1.1664921	0.0235219	1.1649727	238.3024	0	4.8052673						67	5	2	NaN	NaN	NaN	0.84945	1	2875	2875		0	0	1	3541.3	+		25020	9811	14440	14854	19904	19904					-0.15567725967525803
SSGGGGCC	8	Unmodified	_SSGGGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D;ENSG00000187173|ENST00000368779|LCE2A;ENSG00000187223|ENST00000368784|LCE2D;ENSG00000186844|ENST00000335123|LCE1A;ENSG00000240386|ENST00000334371|LCE1F;ENSG00000197084|ENST00000607093|LCE1C;ENSG00000196734|ENST00000360090|LCE1B;ENSG00000186226|ENST00000368770|LCE1E	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.1861218227	1	627.186122	626.178845	1.9956	0.0012516	-5.5772	-0.0034979	-3.5816	-0.0022463	627.1825499359329	26.022	0.14477	26.022	25.877	26.022	0	864	94	1.1030351	0.056301355	1.1030351	225.76068	0	11.523331						211	7	2	NaN	NaN	NaN	0.84945	1	1264	1264		0	0	1	14517			25021	4826	14441	14855	19905	19905					-0.14919691276384128
SSGGGGCC	8	Unmodified	_SSGGGGCC_					0	0	0		ENSG00000172155|ENST00000326233|LCE1D;ENSG00000187173|ENST00000368779|LCE2A;ENSG00000187223|ENST00000368784|LCE2D;ENSG00000186844|ENST00000335123|LCE1A;ENSG00000240386|ENST00000334371|LCE1F;ENSG00000197084|ENST00000607093|LCE1C;ENSG00000196734|ENST00000360090|LCE1B;ENSG00000186226|ENST00000368770|LCE1E	ENSG00000172155|ENST00000326233|LCE1D	ENSG00000172155|ENST00000326233|LCE1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.1861218227	1	627.186122	626.178845	1.8295	0.0011474	-3.7163	-0.0023308	-1.8868	-0.0011834	627.1834781439561	26.046	0.072424	26.035	26.011	26.083	-0.011135	855	103	1.1084836	0.061746716	1.1069641	226.87584	0	12.637833						179	4	2	NaN	NaN	NaN	0.84945	1	1195	1195		0	0	1	12798			25022	4826	14441	14855	19906	19906					-0.14919691276384128
SSGGGGTGY	9	Unmodified	_SSGGGGTGY_					0	0	0			REV__ENSG00000139154|ENST00000266508|AEBP2	REV__ENSG00000139154|ENST00000266508|AEBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3002236031001	1	742.300224	741.292947	1.6101	0.0011952	-2.1766	-0.0016157	-0.56645	-0.00042048	742.2995235688503	55.629	0.14417	55.629	55.532	55.677	0	537	82	1.2998781	0.048493743	1.2998781	265.1655	0	9.8923645						309	7	3	NaN	NaN	NaN	0.67989	1	3925	3925		0.92586	0	1	27796	+		25023	9753	14442	14856	19907	19907					-0.08804761918270287
SSGGGGTGY	9	Unmodified						0	0	0			REV__ENSG00000139154|ENST00000266508|AEBP2	REV__ENSG00000139154|ENST00000266508|AEBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	742.300224	741.292947	1.6101	0.0011952	-2.1766	-0.0016157	-0.56645	-0.00042048	742.2995235688503	55.629	0.14417	55.629	55.532	55.677	0	537	82	1.2998781	0.048493743	1.2998781	265.1655		9.8923645	0.013372	-0.00033917	-0.0010355	NaN	0.92586	309	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27796	+		25024	9753	14442	14856							-0.08804761918270287
SSGGGSVT	8	Unmodified	_SSGGGSVT_					0	0	0		ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.2944099437001	1	651.29441	650.287133	1.5538	0.001012	0.10299	6.7074E-05	1.6568	0.0010791	651.2952912668652	54.98	0.14389	54.98	54.908	55.052	0	690	100	1.2080631	0.05957508	1.2080631	247.06125	0	12.183716						287	7	3	NaN	NaN	NaN	0.84887	1	2050	2050		0.32989	0	1	21466			25025	5759	14443	14857	19908	19908					-0.05199860429934233
SSGGSGLT	8	Unmodified	_SSGGSGLT_					0	0	0		ENST00000451956.1_1_3:50290513-50293631:+|nuORF	ENST00000451956.1_1_3:50290513-50293631:+|nuORF	ENST00000451956.1_1_3:50290513-50293631:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3100600079	1	665.31006	664.302784	2.2058	0.0014675	4.5882	0.0030526	6.794	0.0045201	665.312938453445	18.794	0.09602	18.78	18.756	18.852	-0.014061	738	46	1.179155	0.027128935	1.1776356	241.04445	0	5.5457306						93	5	3	NaN	NaN	NaN	0.84692	1	2340	2340		1.4396	0	1	7792.8			25026	7040	14444	14858	19909	19909					-0.04279573912901924
SSGGSSKG	8	Unmodified	_SSGGSSKG_					0	0	0		nc|ENSG00000136895|Q5VVW2-4|GARNL3;ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.2021	0.0004011	0.85689	0.00028591	2.059	0.00068701	333.65758412039037	37.241	0.14455	37.241	37.169	37.314	0	1533	43	0.6930556	0.026050448	0.6930556	283.3336	0	10.649872						211	7	4	NaN	NaN	NaN	0.84887	1	2450	2450		0.32989	0	1	19553			25027	3055	14445	14859	19910	19910					-0.04800458055649415
SSGGSSKG	8	Unmodified	_SSGGSSKG_					0	0	0		nc|ENSG00000136895|Q5VVW2-4|GARNL3;ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	1.1107	0.00074005	2.5513	0.0016999	3.662	0.00244	666.3078920408509	37.506	0.26478	37.506	37.338	37.602	0	717	97	1.1918083	0.05785954	1.1918083	243.62373	0	11.827362						562	12	4	NaN	NaN	NaN	0.84887	1	2452	2452		0.32989	0	1	73502			25028	3055	14445	14859	19911	19911					-0.04800458055649415
SSGKGGSA	8	Unmodified	_SSGKGGSA_					0	0	0		ENST00000503612.1_1_4:674719-675780:+|nuORF	ENST00000503612.1_1_4:674719-675780:+|nuORF	ENST00000503612.1_1_4:674719-675780:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3103943589	1	650.310394	649.303118	1.8973	0.0012338	-7.5099	-0.0048838	-5.6126	-0.0036499	650.3057795791427	23.248	0.072332	23.248	23.224	23.296	0	1134	58	0.9387595	0.034843147	0.9387595	191.99193	0	7.125992						107	4	2	NaN	NaN	NaN	0.84756	1	2036	2036		1.072	0	1	11414			25029	7316	14446	14860	19912	19912					-0.035561541930519525
SSGKSTVL	8	Unmodified	_SSGKSTVL_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4305094946	1	778.430509	777.423233	1.4842	0.0011554	5.38	0.0041879	6.8642	0.0053433	778.4348543637467	24.574	0.12061	24.562	24.538	24.658	-0.012392	510	61	1.316029	0.0358696	1.3145095	268.23346	0	7.3109436						141	6	3	NaN	NaN	NaN	0.83211	1	4385	4385		4.9097	1.7564	1	14577			25030	7430	14447	14861	19913	19913					0.025618340807113782
SSGNPLDF	8	Unmodified	_SSGNPLDF_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.3784739241	1	836.378474	835.371197	1.7743	0.001484	6.8766	0.0057514	8.6509	0.0072354	836.3846999860315	29.667	0.16891	29.667	29.618	29.787	0	495	64	1.3249949	0.03765297	1.3249949	269.73572	0	7.665222						281	8	3	NaN	NaN	NaN	0.77891	1	5201	5201		12.049	3.7584	1	43865			25031	3271	14448	14862	19914	19914					-0.05307329333038524
SSGPADPAL	9	Unmodified	_SSGPADPAL_					0	0	0		ENST00000356166.10_3_16:30670552-30670825:+|nuORF	ENST00000356166.10_3_16:30670552-30670825:+|nuORF	ENST00000356166.10_3_16:30670552-30670825:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.3941239882998	1	814.394124	813.386848	2.6571	0.0021639	-1.1423	-0.00093026	1.5149	0.0012337	814.3931188181318	18.388	0.19193	18.388	18.34	18.532	0	585	61	1.2711272	0.035961628	1.2711272	258.8828	0	7.3240814						259	9	3	NaN	NaN	NaN	0.028349	1	4929	4929		61.271	29.71	1	30139			25032	6569	14449	14863	19915	19915					-0.02731042816014906
SSGPADPAL	9	Unmodified	_SSGPADPAL_					0	0	0		ENST00000356166.10_3_16:30670552-30670825:+|nuORF	ENST00000356166.10_3_16:30670552-30670825:+|nuORF	ENST00000356166.10_3_16:30670552-30670825:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.3941239882998	1	814.394124	813.386848	2.2009	0.0017924	-0.5391	-0.00043904	1.6618	0.0013534	814.3933264109015	18.41	0.19207	18.396	18.348	18.54	-0.013948	582	73	1.2729256	0.043144703	1.2714062	259.24908	0	8.787048						281	9	3	NaN	NaN	NaN	0.14301	1	4826	4826		29.598	3.4834	1	31271			25033	6569	14449	14863	19916	19916					-0.02731042816014906
SSGPVDPMM	9	Unmodified	_SSGPVDPMM_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.3852155609001	1	920.385216	919.377939	2.0273	0.0018659	-0.44809	-0.00041241	1.5792	0.0014535	920.385732480382	21.826	0.24091	21.826	21.73	21.97	0	441	121	1.3572328	0.071510315	1.3572328	275.88962	0	14.536163						527	11	4	NaN	NaN	NaN	0.023828	1	6394	6394		67.154	42.193	1	97425			25034	1057	14450	14864	19917	19917					-0.08497475768331242
SSGPVDPMM	9	Unmodified	_SSGPVDPMM_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.3852155609001	1	920.385216	919.377939	1.4046	0.0012927	-0.033474	-3.0809E-05	1.3711	0.0012619	920.3859164598724	21.826	0.21673	21.812	21.764	21.98	-0.013895	438	127	1.359022	0.07508576	1.3575026	276.25333	0	15.26297						529	10	4	NaN	NaN	NaN	0.021105	1	6260	6260		70.6	48.473	1	94908			25035	1057	14450	14864	19918	19918					-0.08497475768331242
SSGPVDPMM	9	Oxidation (M)	_SSGPVDPMM(Oxidation (M))_		SSGPVDPM(0.024)M(0.976)		SSGPVDPM(-16)M(16)	0	0	1		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.3801301830001	1	936.38013	935.372854	2.3101	0.0021631	-1.7793	-0.0016661	0.53084	0.00049707	936.3788545415024	18.34	0.09593	18.34	18.268	18.364	0	429	88	1.3643885	0.051875353	1.3643885	277.2742	0	10.542236						305	5	4	NaN	NaN	NaN	0.014046	1	6719	6719		80.639	58.512	2	69135			25036	1057	14450	14865	19919	19919		114;115			-0.09741779630940073
SSGPVDPMM	9	Oxidation (M)	_SSGPVDPMM(Oxidation (M))_		SSGPVDPM(0.03)M(0.97)		SSGPVDPM(-15)M(15)	0	0	1		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.3801301830001	1	936.38013	935.372854	2.5364	0.002375	-2.0991	-0.0019656	0.43725	0.00040943	936.3792140123501	18.362	0.12	18.348	18.252	18.372	-0.013948	429	85	1.3643885	0.0500679	1.362869	277.2742	0	10.174896						331	6	4	NaN	NaN	NaN	0.021105	1	6581	6581		70.6	48.473	2	78783			25037	1057	14450	14865	19920	19920		114;115			-0.09741779630940073
SSGPVDPMM	9	2 Oxidation (M)	_SSGPVDPM(Oxidation (M))M(Oxidation (M))_		SSGPVDPM(1)M(1)		SSGPVDPM(47)M(47)	0	0	2		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.69116063585	2	476.691161	951.367768	0.89131	0.00042488	-1.3273	-0.00063273	-0.43603	-0.00020785	476.69090978582096	14.62	0.28765	14.609	14.513	14.8	-0.011218	1410	70	0.76917666	0.042591035	0.7676573	312.54678	0	17.306396						404	13	3	NaN	NaN	NaN	0.04947	1	6975	6975		47.136	30.719	1	39360			25038	1057	14450	14866	19921	19921		114;115			-0.10986083493571641
SSGPVDPMM	9	2 Oxidation (M)	_SSGPVDPM(Oxidation (M))M(Oxidation (M))_		SSGPVDPM(1)M(1)		SSGPVDPM(53)M(53)	0	0	2		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.3750448051001	1	952.375045	951.367768	1.4559	0.0013866	-0.69567	-0.00066254	0.76027	0.00072406	952.3747064329596	14.62	0.38363	14.609	14.465	14.849	-0.011218	435	73	1.360811	0.042933464	1.3592916	276.4797	0	8.722931						563	17	3	NaN	NaN	NaN	0.036546	1	6976	6976		52.624	36.207	1	104830			25039	1057	14450	14866	19922	19922		114;115			-0.10986083493571641
SSGQGLEF	8	Unmodified	_SSGQGLEF_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.3784739241	1	824.378474	823.371197	1.1772	0.00097044	5.5444	0.0045707	6.7216	0.0055411	824.3825269598944	30.438	0.16891	30.432	30.408	30.577	-0.0057545	477	85	1.3357477	0.050185323	1.3342283	271.98886	0	10.218872						405	8	4	NaN	NaN	NaN	0.63138	1	4944	4944		23.334	4.2161	1	83208	+		25040	10157	14451	14867	19923	19923					-0.04755329333045211
SSGRFGAP	8	Unmodified	_SSGRFGAP_					0	0	0			REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.3842280040001	1	778.384228	777.376952	2.445	0.0019032	5.3486	0.0041633	7.7936	0.0060664	778.38815872003	26.553	0.048248	26.542	26.494	26.542	-0.010645	534	40	1.3016734	0.02333641	1.300154	265.30777	0	4.7564087						37	3	2	NaN	NaN	NaN	0.80692	1	4380	4380		8.2903	2.2	1	2581.7	+		25041	10624	14452	14868	19924	19924					-0.020641860307136994
SSGSLGAH	8	Unmodified	_SSGSLGAH_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3369434604	1	715.336943	714.329667	0.60193	0.00043058	-9.3762	-0.0067072	-8.7743	-0.0062766	715.3304013012025	40.945	0.16814	40.945	40.825	40.993	0	714	64	1.1936152	0.037947893	1.1936152	243.65552	0	7.746414						183	8	2	NaN	NaN	NaN	0.8439	1	3502	3502		3.1533	0	1	22982			25042	4306	14453	14869	19925	19925					-0.03892465301714765
SSGSLGAH	8	Unmodified	_SSGSLGAH_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3369434604	1	715.336943	714.329667	0.68064	0.00048689	-8.7273	-0.0062429	-8.0466	-0.0057561	715.3308272823139	39.694	0.36135	39.694	39.694	40.056	0	690	112	1.2080631	0.06685364	1.2080631	246.6048	0	13.646988						651	16	2	NaN	NaN	NaN	0.84692	1	3505	3505		1.4396	0	1	103830			25043	4306	14453	14869	19926	19926					-0.03892465301714765
SSGSSALL	8	Unmodified	_SSGSSALL_					0	0	0		ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	ENSG00000162627|ENST00000306121|SNX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3726602647001	1	721.37266	720.365384	1.5382	0.0011096	5.4494	0.003931	6.9876	0.0050407	721.376967527914	25.274	0.096472	25.274	25.274	25.371	0	597	61	1.2639319	0.035992384	1.2639319	257.96866	0	7.346054						87	5	2	NaN	NaN	NaN	0.84727	1	3595	3595		1.2418	0	1	6963.9			25044	4155	14454	14870	19927	19927					-0.005984278447044744
SSHAKLVNQW	10	Unmodified	_SSHAKLVNQW_					0	0	0			REV__nc|ENSG00000160218|P48553-2|TRAPPC10	REV__nc|ENSG00000160218|P48553-2|TRAPPC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.30672945795	2	585.306729	1168.59891	1.1098	0.00064958	4.8388	0.0028322	5.9486	0.0034818	585.308145392435	20.694	0.12054	20.68	20.656	20.776	-0.014088	1215	91	0.8891654	0.055155218	0.88764596	360.3447	0	22.352295						139	6	3	NaN	NaN	NaN	0.70677	1	14910	14910		7.5876	1.4973	1	14573	+		25045	10195	14455	14871	19928	19928					0.02135048594800537
SSHRNDNLD	9	Unmodified	_SSHRNDNLD_					0	0	0			REV__SPHKAP|p.P692L|1|0.36|ENSG00000153820|chr2:228018779-228018779|G/A|missense_variant	REV__SPHKAP|p.P692L|1|0.36|ENSG00000153820|chr2:228018779-228018779|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2365011343	2	529.236501	1056.45845	1.4117	0.00074713	0.37738	0.00019972	1.7891	0.00094685	529.2362077187427	20.429	0.072128	20.429	20.429	20.501	0	1275	43	0.85233563	0.025808692	0.85233563	345.8464	0	10.472229						61	4	2	NaN	NaN	NaN	0.54912	1	10922	10922		7.5876	0.047225	1	7529.6	+		25046	13339	14456	14872	19929	19929					-0.06752155129424864
SSHRNDNLD	9	Unmodified						0	0	0			REV__SPHKAP|p.P692L|1|0.36|ENSG00000153820|chr2:228018779-228018779|G/A|missense_variant	REV__SPHKAP|p.P692L|1|0.36|ENSG00000153820|chr2:228018779-228018779|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.236501	1056.45845	1.4117	0.00074713	0.37738	0.00019972	1.7891	0.00094685	529.2362077187427	20.429	0.072128	20.429	20.429	20.501	0	1275	43	0.85233563	0.025808692	0.85233563	345.8464		10.472229	0.055207	0.0037549	-0.00569	NaN	7.5876	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7529.6	+		25047	13339	14456	14872							-0.06752155129424864
SSHYGEFLP	9	Unmodified	_SSHYGEFLP_					0	0	0		ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4734369418	1	1036.47344	1035.46616	1.499	0.0015537	-10.853	-0.011249	-9.354	-0.0096952	1036.4619304089274	29.859	0.096514	29.852	29.828	29.924	-0.0070648	291	40	1.446459	0.02313602	1.4449396	293.54025	0	4.69516						66	5	2	NaN	NaN	NaN	0.55027	1	9786	9786		7.5404	1.45	1	4436.2			25048	6149	14457	14873	19930	19930					-0.05015395861846628
SSHYGEFLP	9	Unmodified						0	0	0		ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1036.47344	1035.46616	1.8219	0.0018884	-10.373	-0.010751	-8.5511	-0.008863	1036.4625069726353	29.884	0.096531	29.884	29.836	29.932	0	294	40	1.4446791	0.023140907	1.4446791	293.17905		4.6961365	0.016057	0.00020796	-0.00013022	NaN	7.5404	74	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4821.3			25049	6149	14457	14873							-0.05015395861846628
SSIDSEPAL	9	Unmodified	_SSIDSEPAL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4414681114	1	918.441468	917.434192	1.7222	0.0015817	-0.21599	-0.00019837	1.5062	0.0013834	918.4412338349707	20.887	0.28889	20.887	20.814	21.103	0	387	109	1.389409	0.06429076	1.389409	282.43903	0	13.069						770	13	4	NaN	NaN	NaN	0.00050979	1	6364	6364		115.51	53.533	1	191340			25050	1423	14458	14874	19931	19931					-0.027828083356666866
SSIDSEPAL	9	Unmodified	_SSIDSEPAL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4414681114	1	918.441468	917.434192	1.2832	0.0011785	0.14298	0.00013132	1.4261	0.0013098	918.4414072852136	20.887	0.26481	20.873	20.801	21.065	-0.014088	384	121	1.3911947	0.0714494	1.3896753	282.80203	0	14.5242						789	12	4	NaN	NaN	NaN	0.00050979	1	6230	6230		115.51	62.751	1	195770			25051	1423	14458	14874	19932	19932					-0.027828083356666866
SSILMEARV	9	Unmodified	_SSILMEARV_					0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.2735094173	2	503.273509	1004.53247	1.3926	0.00070085	-2.593	-0.001305	-1.2004	-0.00060413	503.27341713771347	21.127	0.12048	21.127	21.127	21.248	0	1314	67	0.8283535	0.040618062	0.8283535	336.33884	0	16.492249						134	6	2	NaN	NaN	NaN	0.48181	1	8768	8768		10.36	1.3982	1	14544			25052	1221	14459	14875	19933	19933					0.03038096708530702
SSILMEARV	9	Unmodified						0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	503.273509	1004.53247	1.057	0.00053198	3.8096	0.0019172	4.8666	0.0024492	503.27526897222396	20.887	0.024118	20.873	20.873	20.897	-0.014088	1320	64	0.824661	0.038752913	0.8231416	334.8395		15.734955	-0.1273	0.0024253	-0.002606	NaN	10.36	63	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6137			25053	1221	14459	14875							0.03038096708530702
SSKGGGKK	8	Unmodified	_SSKGGGKK_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9;ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.7192273316	2	374.719227	747.423902	1.8004	0.00067464	-3.8189	-0.001431	-2.0185	-0.00075637	374.71789366378846	16.802	0.23961	16.789	16.693	16.933	-0.013294	1452	37	0.74322224	0.022261143	0.7417028	303.17114	0	9.080658						172	11	2	NaN	NaN	NaN	0.84945	1	3929	3929		0	0	1	22321			25054	5960	14460	14876	19934	19934					0.0400867352042269
SSKGGVSL	8	Unmodified	_SSKGGVSL_					0	0	0			REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	734.4042947441	1	734.404295	733.397018	0.90313	0.00066327	3.9931	0.0029325	4.8962	0.0035958	734.4069104751459	33.864	0.14475	33.863	33.839	33.983	-0.0018463	630	58	1.2441287	0.03422022	1.2426093	253.8426	0	6.9820404						187	7	3	NaN	NaN	NaN	0.83211	1	3724	3724		4.9097	0	1	21846	+		25055	11589	14461	14877	19935	19935					0.01965564909232853
SSKGGVSL	8	Unmodified						0	0	0			REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	734.404295	733.397018	0.66935	0.00049157	4.1258	0.00303	4.7952	0.0035216	734.4073223537177	33.89	0.12065	33.89	33.842	33.962	0	630	64	1.2441287	0.0378263	1.2441287	253.8426		7.717819	0.013584	4.4367E-05	0.00075972	NaN	4.9097	166	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22341	+		25056	11589	14461	14877							0.01965564909232853
SSKGGVSL	8	Unmodified						0	0	0			REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	REV__ENST00000272638.13_1_2:136541911-136542013:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	734.404295	733.397018	0.90313	0.00066327	3.9931	0.0029325	4.8962	0.0035958	734.4069104751459	33.864	0.14475	33.863	33.839	33.983	-0.0018463	630	58	1.2441287	0.03422022	1.2426093	253.8426		6.9820404	-0.013584	-5.315E-05	-0.00075972	NaN	4.9097	187	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21846	+		25057	11589	14461	14877							0.01965564909232853
SSKGSGGG	8	Unmodified	_SSKGSGGG_					0	0	0			REV__ENSG00000171403|ENST00000246662|KRT9	REV__ENSG00000171403|ENST00000246662|KRT9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.2947442947002	1	636.294744	635.287468	-0.18565	-0.00011813	8.3879	0.0053372	8.2022	0.005219	636.2998966462926	55.098	0.2402	55.097	55.001	55.242	-0.0006218	723	112	1.1881942	0.06682503	1.1866747	243.11588	0	13.673019						380	11	3	NaN	NaN	NaN	0.84945	1	1539	1539		0	0	1	34724	+	+	25058	8267	14462	14878	19936	19936					-0.04476440710072893
SSKGSSSL	8	Unmodified	_SSKGSSSL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.3784739241001	1	752.378474	751.371197	1.9655	0.0014788	4.6307	0.003484	6.5962	0.0049628	752.3820416767066	23.272	0.1688	23.272	23.224	23.393	0	546	61	1.294491	0.035927057	1.294491	264.00223	0	7.3270874						171	8	2	NaN	NaN	NaN	0.83582	1	4088	4088		4.4131	0	1	31609			25059	2037	14463	14879	19937	19937					-0.014433293330284869
SSKSSGGG	8	Unmodified	_SSKSSGGG_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.65629272380005	2	333.656293	665.298033	1.7304	0.00057735	4.3618	0.0014553	6.0922	0.0020327	333.65804681431797	34.443	0.072361	34.443	34.419	34.491	-0.0006485	1548	34	0.6837494	0.020480454	0.68222994	279.529	0	8.372772						68	4	2	NaN	NaN	NaN	0.84887	1	2369	2369		0.32989	0	1	6633.1			25060	4261	14464	14880	19938	19938					-0.04800458055649415
SSKSSGGG	8	Unmodified						0	0	0		ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.656293	665.298033	1.7236	0.00057509	3.0684	0.0010238	4.792	0.0015989	333.65768505000864	34.469	0.12067	34.469	34.421	34.541	0	1548	37	0.6837494	0.022341132	0.6837494	279.529		9.133453	0.013004	-0.0004994	0.00075972	NaN	0.32989	83	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6192.9			25061	4261	14464	14880							-0.04800458055649415
SSLHAVFS	8	Unmodified	_SSLHAVFS_					0	0	0		nc|ENSG00000145819|Q9UNA1|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	nc|ENSG00000145819|Q9UNA1|ARHGAP26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.2190601561	2	424.21906	846.423567	1.4696	0.00062342	-0.88218	-0.00037424	0.58738	0.00024918	424.2189291060942	15.438	0.072117	15.438	15.414	15.486	0	1461	34	0.7376554	0.020413876	0.7376554	300.26712	0	8.30957						62	4	2	NaN	NaN	NaN	0.84455	1	5341	5341		2.7852	0.32367	1	6873			25062	7952	14465	14881	19939	19939					-0.005787461994259502
SSLNEAIRDEL	11	Unmodified	_SSLNEAIRDEL_					0	0	0			REV__ENSG00000170537|ENST00000304381|TMC7	REV__ENSG00000170537|ENST00000304381|TMC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.21397477819994	3	416.213975	1245.62009	1.1787	0.00049059	7.3717	0.0030682	8.5504	0.0035588	416.2173297362695	15.268	0.2159	15.256	15.208	15.424	-0.012202	1506	43	0.70979416	0.026022136	0.7082747	431.16342	0	15.807129						164	10	3	NaN	NaN	NaN	0.44296	1	16913	16913		11.467	0	1	20393	+		25063	10590	14466	14882	19940	19940					0.007109691129926432
SSLTGGVV	8	Unmodified	_SSLTGGVV_					0	0	0			REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	REV__nc|ENSG00000172432|Q9BX10-3|GTPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3933957068001	1	719.393396	718.386119	-0.40723	-0.00029296	7.9365	0.0057094	7.5292	0.0054165	719.3982632006209	55.578	0.14417	55.578	55.53	55.674	-0.00059128	522	58	1.3088527	0.03409612	1.3073332	267.15076	0	6.959381						103	7	2	NaN	NaN	NaN	0.84727	1	3500	3500		1.2418	0.31598	1	8788.8	+		25064	10654	14467	14883	19941	19941					0.015661625349594033
SSMVDNHTKQ	10	Unmodified	_SSMVDNHTKQ_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.76403715325	2	573.764037	1145.51352	0.96541	0.00055392	3.2371	0.0018573	4.2025	0.0024113	573.7660124853193	21.176	0.096369	21.162	21.114	21.21	-0.014004	1224	79	0.883646	0.047837377	0.88212657	358.19208	0	19.391205						171	5	2	NaN	NaN	NaN	0.24484	1	14154	14154		31.675	1.0653	1	41463			25065	1858	14468	14884	19942	19942					-0.053414846531723015
SSNLELHSL	9	Unmodified	_SSNLELHSL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.25891359810004	2	500.258914	998.503274	1.8152	0.00090806	-2.1466	-0.0010739	-0.33144	-0.00016581	500.2581898349601	19.516	0.16797	19.516	19.468	19.636	0	1326	61	0.8209676	0.036925495	0.8209676	333.36713	0	14.994202						231	8	4	NaN	NaN	NaN	0.013696	1	8522	8522		81.699	40.743	1	40960			25066	3057	14469	14885	19943	19943					0.003962756839086978
SSNLELHSL	9	Unmodified	_SSNLELHSL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7;ENST00000498485.5_1_9:127146904-127177393:-|nuORF	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.25891359810004	2	500.258914	998.503274	1.2838	0.00064221	-1.2469	-0.00062379	0.036827	1.8423E-05	500.25794292147737	19.539	0.12039	19.524	19.476	19.597	-0.014143	1329	52	0.81912065	0.031395137	0.8176012	332.61713	0	12.748505						194	6	3	NaN	NaN	NaN	0.074859	1	8341	8341		39.459	16.341	1	37932			25067	3057	14469	14885	19944	19944					0.003962756839086978
SSNSGFGPEEG	11	Unmodified	_SSNSGFGPEEG_					0	0	0		ENST00000471240.1_1_10:74033815-74034322:+|nuORF	ENST00000471240.1_1_10:74033815-74034322:+|nuORF	ENST00000471240.1_1_10:74033815-74034322:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2174427139	2	534.217443	1066.42033	1.391	0.00074307	-6.9234	-0.0036986	-5.5325	-0.0029555	534.2138272149494	15.484	0.28781	15.472	15.424	15.712	-0.012201	1308	52	0.83204526	0.031381547	0.8305259	337.57278	0	12.731964						307	13	2	NaN	NaN	NaN	0.70497	1	11122	11122		7.1304	0.26716	1	71739			25068	7151	14470	14886	19945	19945					-0.11022085834747486
SSNSGGGG	8	Unmodified	_SSNSGGGG_					0	0	0			REV__ENST00000452791.1_1_3:31918000-32022671:-|nuORF	REV__ENST00000452791.1_1_3:31918000-32022671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2427087242002	1	622.242709	621.235432	-0.45637	-0.00028398	9.0438	0.0056274	8.5874	0.0053435	622.2496784599057	46.196	0.072094	46.207	46.207	46.279	0.010719	705	67	1.1990347	0.039744258	1.1975152	245.45073	0	8.135956						110	4	2	NaN	NaN	NaN	0.84945	1	1097	1097		0	0	1	9077.8	+		25069	8337	14471	14887	19946	19946					-0.09033604123840178
SSNTYRREKER	11	Unmodified	_SSNTYRREKER_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.36329559665	2	713.363296	1424.71204	1.3038	0.00093005	-8.3285	-0.0059413	-7.0248	-0.0050112	713.3574974735653	22.091	0.096399	22.077	22.053	22.149	-0.013731	1068	31	0.97906286	0.01829803	0.9775434	395.94357	0	7.399933						62	5	2	NaN	NaN	NaN	0.74794	1	19291	19291		4.3102	0.38204	1	5583.8	+		25070	11302	14472	14888	19947	19947					0.016670722500293778
SSNTYRREKER	11	Unmodified						0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	713.363296	1424.71204	1.3038	0.00093005	-8.3285	-0.0059413	-7.0248	-0.0050112	713.3574974735653	22.091	0.096399	22.077	22.053	22.149	-0.013731	1068	31	0.97906286	0.01829803	0.9775434	395.94357		7.399933	0.0050188	0.0017889	-0.0016746	NaN	4.3102	62	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5583.8	+		25071	11302	14472	14888							0.016670722500293778
SSPFGDYRQ	9	Unmodified	_SSPFGDYRQ_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.74088802045	2	528.740888	1055.46722	1.8101	0.00095709	-1.7299	-0.00091469	0.080184	4.2396E-05	528.7400063846761	22.694	0.16883	22.694	22.645	22.814	0	1293	46	0.84127116	0.027668655	0.84127116	341.361	0	11.227081						149	8	2	NaN	NaN	NaN	0.49672	1	10866	10866		9.746	0.13435	1	28072			25072	2872	14473	14889	19948	19948					-0.058291814929589236
SSPFGDYRQ	9	Unmodified						0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.740888	1055.46722	1.0216	0.00054016	-0.57746	-0.00030533	0.44414	0.00023483	528.7407753701038	22.693	0.1928	22.68	22.655	22.848	-0.01354	1293	43	0.84127116	0.0258255	0.8397517	341.361		10.4791565	-0.0070743	0.00067116	-0.00075972	NaN	9.746	138	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26248			25073	2872	14473	14889							-0.058291814929589236
SSPGIGAV	8	Unmodified	_SSPGIGAV_					0	0	0		ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	ENSG00000136514|ENST00000259030|RTP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.3671809563001	1	687.367181	686.359904	1.7749	0.00122	-3.1871	-0.0021907	-1.4122	-0.0009707	687.3643398685465	21.2	0.096361	21.2	21.151	21.248	0	678	49	1.2152823	0.02886784	1.2152823	248.2686	0	5.8973846						86	5	2	NaN	NaN	NaN	0.79379	1	2956	2956		10.052	3.9612	1	5489.5			25074	3021	14474	14890	19949	19949					0.004178933634875648
SSPLGGLL	8	Unmodified	_SSPLGGLL_					0	0	0			REV__nc|ENSG00000184481|P98177-2|FOXO4	REV__nc|ENSG00000184481|P98177-2|FOXO4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.2185288398501	2	372.218529	742.422505	1.9239	0.0007161	2.1289	0.00079243	4.0528	0.0015085	372.21923864679604	18.868	0.047966	18.868	18.844	18.892	0	1383	67	0.7858409	0.040732563	0.7858409	320.5947	0	16.617432						108	3	2	NaN	NaN	NaN	0.84876	1	3958	3958		0.39566	0	1	12479	+		25075	10928	14475	14891	19950	19950					0.04099039431685014
SSPLGGLL	8	Unmodified						0	0	0			REV__nc|ENSG00000184481|P98177-2|FOXO4	REV__nc|ENSG00000184481|P98177-2|FOXO4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	372.218529	742.422505	1.9239	0.0007161	2.1289	0.00079243	4.0528	0.0015085	372.21923864679604	18.868	0.047966	18.868	18.844	18.892	0	1383	67	0.7858409	0.040732563	0.7858409	320.5947		16.617432	-0.003683	-0.00020353	0.0026106	NaN	0.39566	108	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12479	+		25076	10928	14475	14891							0.04099039431685014
SSPLGGLL	8	Unmodified						0	0	0			REV__nc|ENSG00000184481|P98177-2|FOXO4	REV__nc|ENSG00000184481|P98177-2|FOXO4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	372.218529	742.422505	1.7974	0.00066903	2.6859	0.00099973	4.4833	0.0016688	372.2194297969031	18.89	0.096144	18.876	18.852	18.948	-0.014061	1389	61	0.7821392	0.037029624	0.78061974	319.0845		15.1067505	0.003683	0.00021108	-0.0026106	NaN	0.39566	121	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15038	+		25077	10928	14475	14891							0.04099039431685014
SSPPFLAAL	9	Unmodified	_SSPPFLAAL_					0	0	0		nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	nc|ENSG00000106012|Q6IPM2-2|IQCE	nc|ENSG00000106012|Q6IPM2-2|IQCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4981951293001	1	902.498195	901.490919	1.6221	0.001464	-0.56017	-0.00050555	1.062	0.00095842	902.4972487232608	29.328	0.12064	29.32	29.224	29.344	-0.0077209	357	64	1.407258	0.037477016	1.4057386	286.14215	0	7.6203003						106	6	2	NaN	NaN	NaN	0.49672	1	5987	5987		9.746	1.4557	1	8137.2			25078	1585	14476	14892	19951	19951					0.03623284011530359
SSPPFLAAL	9	Unmodified						0	0	0		nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	nc|ENSG00000106012|Q6IPM2-2|IQCE	nc|ENSG00000106012|Q6IPM2-2|IQCE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	902.498195	901.490919	1.5298	0.0013806	-3.8713	-0.0034939	-2.3415	-0.0021132	902.4946044955475	29.305	0.096498	29.305	29.256	29.353	0	357	67	1.407258	0.039263725	1.407258	286.14215		7.9835815	-0.0078203	-0.0016535	0.00075972	NaN	9.746	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9084.4			25079	1585	14476	14892							0.03623284011530359
SSPPPQGG	8	Unmodified	_SSPPPQGG_					0	0	0			REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|8|1|sense	REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|8|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3416944873002	1	726.341694	725.334418	1.346	0.00097763	-1.2056	-0.00087569	0.14035	0.00010194	726.3409614811503	21.488	0.07235	21.488	21.464	21.537	0	1383	40	0.7858409	0.024057508	0.7858409	160.36975	0	4.9095154						88	4	2	NaN	NaN	NaN	0.84897	1	3686	3686		0.27539	0	1	7481.3	+		25080	13348	14477	14893	19952	19952					-0.0392358115893785
SSPSLSNC	8	Unmodified	_SSPSLSNC_					0	0	0		FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B;FAM13B|p.S14F|1|0.36|ENSG00000031003|chr5:138019071-138019071|G/A|missense_variant	FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant	FAM13B|p.D439Efs*5|1|0.29|ENSG00000031003|chr5:137959736-137959740|TCAAA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.67108550825	2	397.671086	793.327618	0.71792	0.0002855	1.8472	0.00073459	2.5652	0.0010201	397.6719679713117	30.753	0.096556	30.753	30.728	30.825	0	1323	67	0.8228144	0.040635645	0.8228144	335.28873	0	16.558624						128	5	2	NaN	NaN	NaN	0.83211	1	4665	4665		4.9097	0.94122	1	10729			25081	492	14478	14894	19953	19953					-0.07731262101833636
SSQGGKDF	8	Unmodified	_SSQGGKDF_					0	0	0		ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	825.3737228972	1	825.373723	824.366446	1.72	0.0014196	6.8858	0.0056833	8.6058	0.007103	825.3802649044258	29.522	0.14486	29.522	29.474	29.618	0	507	73	1.3178225	0.043061852	1.3178225	268.33356	0	8.768219						248	7	3	NaN	NaN	NaN	0.84606	1	5083	5083		1.9246	0.48507	1	21934			25082	5459	14479	14895	19954	19954					-0.05276213475815439
SSQRHSISAMP	11	Unmodified	_SSQRHSISAMP_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.7931289437	2	600.793129	1199.5717	1.4107	0.00084752	-3.0528	-0.0018341	-1.6422	-0.00098661	601.2923794814212	25.105	0.072371	25.105	25.033	25.105	0	1146	61	0.93142134	0.036694765	0.93142134	377.35574	0	14.866486						69	4	2	NaN	NaN	NaN	0.7072	1	16460	16460		6.9844	0	1	5820.1			25083	3114	14480	14896	19955	19955					-0.02009803007899791
SSQSHATVM	9	Unmodified	_SSQSHATVM_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4251065407001	1	947.425107	946.41783	1.7095	0.0016196	-10.085	-0.0095546	-8.3753	-0.007935	947.4158163698205	19.156	0.14396	19.156	19.108	19.252	0	345	52	1.4143922	0.030319095	1.4143922	287.38748	0	6.160492						164	7	3	NaN	NaN	NaN	0.31471	1	6982	6982		17.97	4.2326	1	13340	+		25084	8679	14481	14897	19956	19956					-0.05752212773404608
SSQSHATVM	9	Unmodified						0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	947.425107	946.41783	1.7095	0.0016196	-10.085	-0.0095546	-8.3753	-0.007935	947.4158163698205	19.156	0.14396	19.156	19.108	19.252	0	345	52	1.4143922	0.030319095	1.4143922	287.38748		6.160492	0.0081652	0.00032558	0.0016514	NaN	17.97	164	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13340	+		25085	8679	14481	14897							-0.05752212773404608
SSQSKHSKG	9	Unmodified	_SSQSKHSKG_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.24105519595	2	473.241055	944.467557	1.1653	0.00055149	2.4131	0.001142	3.5784	0.0016935	473.2427197534563	15.005	0.12009	15.005	14.957	15.077	0	1350	70	0.80618626	0.042508066	0.80618626	327.6193	0	17.274475						126	6	2	NaN	NaN	NaN	0.59509	1	6931	6931		5.6942	0.78442	1	9949.3	+		25086	10117	14482	14898	19957	19957					-0.006897617730942329
SSQSKHSKG	9	Unmodified						0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.241055	944.467557	1.1653	0.00055149	2.4131	0.001142	3.5784	0.0016935	473.2427197534563	15.005	0.12009	15.005	14.957	15.077	0	1350	70	0.80618626	0.042508066	0.80618626	327.6193		17.274475	-0.0054005	-0.00063068	0.001684	NaN	5.6942	126	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9949.3	+		25087	10117	14482	14898							-0.006897617730942329
SSQTLLVGL	9	Unmodified	_SSQTLLVGL_					0	0	0			REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392002	1	917.530224	916.522947	1.8975	0.001741	-0.74721	-0.00068559	1.1503	0.0010555	917.5287258910134	57.405	0.048035	57.405	57.357	57.405	0	348	49	1.412609	0.028540134	1.412609	287.15933	0	5.8017273						54	3	2	NaN	NaN	NaN	0.65818	1	6355	6355		2.7852	0.32367	1	3320.8	+		25088	12767	14483	14899	19958	19958					0.06134651694674176
SSQTQDHSVRS	11	Unmodified	_SSQTQDHSVRS_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.28672229735	2	616.286722	1230.55889	1.4374	0.00088588	0.29112	0.00017941	1.7286	0.0010653	616.2866529128306	23.007	0.096169	23.007	22.983	23.079	0	1161	43	0.9222442	0.025705755	0.9222442	373.5307	0	10.411438						78	5	2	NaN	NaN	NaN	0.71564	1	17261	17261		6.4299	0.17972	1	8618.3			25089	921	14484	14900	19959	19959					-0.04716542866435702
SSQTQDHSVRS	11	Unmodified						0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.286722	1230.55889	1.1181	0.00068905	0.85201	0.00052508	1.9701	0.0012141	616.7879982790298	23.079	0.16868	23.065	23.017	23.186	-0.013294	1167	64	0.91857195	0.03856486	0.9170525	372.04333		15.61969	0.029149	0.00030731	-0.0025958	NaN	6.4299	196	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15880			25090	921	14484	14900							-0.04716542866435702
SSRGRPHLRR	10	Unmodified	_SSRGRPHLRR_					0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.35541098505	2	611.355411	1220.69627	0.71629	0.00043791	0.39091	0.00023898	1.1072	0.00067689	611.3552388845699	32.104	0.12066	32.104	32.008	32.128	0	1068	64	0.97906286	0.038419545	0.97906286	396.57913	0	15.562225						216	6	4	NaN	NaN	NaN	0.78	1	17006	17006		0.51604	0.24065	1	35587	+		25091	11618	14485	14901	19960	19960					0.09474875314276687
SSRGRPHLRR	10	Unmodified						0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.355411	1220.69627	0.71629	0.00043791	0.39091	0.00023898	1.1072	0.00067689	611.3552388845699	32.104	0.12066	32.104	32.008	32.128	0	1068	64	0.97906286	0.038419545	0.97906286	396.57913		15.562225	0.13548	0.00031497	0.00075972	NaN	0.51604	216	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35587	+		25092	11618	14485	14901							0.09474875314276687
SSRGRPHLRR	10	Unmodified						0	0	0			REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	REV__ENST00000286371.7_1_3:141595540-141622555:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.355411	1220.69627	0.21285	0.00013013	-0.36335	-0.00022213	-0.15049	-9.2004E-05	611.3546668157211	31.838	0.14479	31.833	31.785	31.93	-0.0044155	1068	58	0.97906286	0.03476429	0.9775434	396.57913		14.0816345	-0.13548	-0.00060726	-0.00075972	NaN	0.51604	158	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11575	+		25093	11618	14485	14901							0.09474875314276687
SSRKQRLKM	9	Unmodified	_SSRKQRLKM_					0	0	0			REV__ENST00000560919.5_1_15:80181533-80181635:-|nuORF	REV__ENST00000560919.5_1_15:80181533-80181635:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3322243144501	2	567.332224	1132.6499	1.0231	0.00058044	-5.7558	-0.0032655	-4.7327	-0.002685	567.3293006223219	30.583	0.33783	30.577	30.408	30.746	-0.0057545	1122	121	0.9460945	0.073342144	0.9445751	383.55786	0	29.733765						564	15	3	NaN	NaN	NaN	0.68136	1	13753	13753		0.79988	0	1	79988	+		25094	12785	14486	14902	19961	19961					0.08887674367997533
SSRLSIFLTC	10	Unmodified	_SSRLSIFLTC_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7998913433	2	563.799891	1125.58523	1.0641	0.00059996	-3.9235	-0.0022121	-2.8594	-0.0016121	563.7977222023364	27.518	0.14479	27.508	27.484	27.629	-0.009552	1248	112	0.8689189	0.06807256	0.86739945	352.29654	0	27.599487						252	7	2	NaN	NaN	NaN	0.65442	1	13484	13484		11.17	0.81017	1	41281	+		25095	10516	14487	14903	19962	19962					0.027460547713417327
SSRSHLQEL	9	Unmodified	_SSRSHLQEL_					0	0	0		ENST00000420737.1_1:146011237-146016889:+|nuORF;ENST00000479369.6_1_1:144864133-144875987:-|nuORF;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	ENST00000420737.1_1:146011237-146016889:+|nuORF	ENST00000420737.1_1:146011237-146016889:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5432478414998	1	1056.54325	1055.53597	1.6242	0.0017161	-4.2871	-0.0045295	-2.6628	-0.0028134	1056.539180643592	41.281	0.096264	41.281	41.257	41.353	0	213	31	1.4926696	0.017748713	1.4926696	302.84232	0	3.6009827						48	5	2	NaN	NaN	NaN	0.59509	1	10891	10891		5.6942	0	1	2701.9			25096	5101	14488	14904	19963	19963					0.010424828067471026
SSSAGAGG	8	Unmodified	_SSSAGAGG_					0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628;REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.2525451290002	1	593.252545	592.245269	0.80314	0.00047647	6.7261	0.0039903	7.5292	0.0044667	593.2561357467181	31.839	0.14481	31.839	31.815	31.959	0	1239	67	0.87444305	0.040490866	0.87444305	179.1929	0	8.297485						160	7	2	NaN	NaN	NaN	0.84887	1	564	564		0.32989	0	1	18717			25097	8502;5708	14489	14905	19964	19964					-0.06716416118456436
SSSAGAGG	8	Unmodified						0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628;REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	593.252545	592.245269	0.25107	0.00014895	7.2068	0.0042755	7.4579	0.0044244	593.2570606135583	31.838	0.19308	31.833	31.761	31.954	-0.0044155	1236	55	0.876284	0.033132493	0.8747646	179.57016		6.7895813	-0.0027309	0.00015306	0.00016078	NaN	0.32989	176	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20344			25098	8502;5708	14489	14905							-0.06716416118456436
SSSAKGGG	8	Unmodified	_SSSAKGGG_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.6588354127501	2	325.658835	649.303118	1.8911	0.00061585	2.0544	0.00066902	3.9455	0.0012849	325.6606580702078	51.733	0.095783	51.733	51.685	51.781	0	1539	28	0.68933374	0.016747653	0.68933374	281.9514	0	6.8500977						70	5	2	NaN	NaN	NaN	0.84945	1	2037	2037		0	0	1	4378.3			25099	2779	14490	14906	19965	19965					-0.03556154193029215
SSSAKGGG	8	Unmodified	_SSSAKGGG_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.6588354127501	2	325.658835	649.303118	0.89918	0.00029283	3.4849	0.0011349	4.3841	0.0014277	325.66082500424426	39.02	0.16818	39.02	38.876	39.044	0	1539	94	0.68933374	0.057667494	0.68933374	281.95135	0	23.587158						346	8	4	NaN	NaN	NaN	0.84945	1	2038	2038		0	0	1	42808			25100	2779	14490	14906	19966	19966					-0.03556154193029215
SSSAKGGG	8	Unmodified	_SSSAKGGG_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.6588354127501	2	325.658835	649.303118	1.4356	0.00046752	3.7437	0.0012192	5.1793	0.0016867	325.66093120764344	41.714	0.24046	41.714	41.666	41.907	0	1536	94	0.69119483	0.057673752	0.69119483	282.71255	0	23.589722						475	11	4	NaN	NaN	NaN	0.84897	1	2040	2040		0.27539	0	1	154320			25101	2779	14490	14906	19967	19967					-0.03556154193029215
SSSAKGGG	8	Unmodified	_SSSAKGGG_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.6588354127501	2	325.658835	649.303118	1.7918	0.00058352	4.6585	0.0015171	6.4503	0.0021006	325.6614676194994	48.426	0.071915	48.426	48.426	48.498	0	1536	40	0.69119483	0.024191022	0.69119483	282.71255	0	9.894623						70	4	2	NaN	NaN	NaN	0.84887	1	2043	2043		0.32989	0	1	11102			25102	2779	14490	14906	19968	19968					-0.03556154193029215
SSSAKGGG	8	Unmodified	_SSSAKGGG_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.6588354127501	2	325.658835	649.303118	1.7729	0.00057737	5.0779	0.0016537	6.8508	0.002231	325.66056558003686	40.102	0.65015	40.108	39.674	40.324	0.0060463	1533	64	0.6930556	0.03907782	0.6915362	283.4737	0	15.983612						615	28	2	NaN	NaN	NaN	0.84945	1	1952	1952		0	0	1	218290			25103	2779	14490	14906	19969	19969					-0.03556154193029215
SSSASLGG	8	Unmodified	_SSSASLGG_					0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.1586682372501	2	333.158668	664.302784	1.7645	0.00058787	4.0289	0.0013423	5.7934	0.0019301	333.15984244899687	28.436	0.14483	28.436	28.412	28.556	0	1512	94	0.7060759	0.057667494	0.7060759	288.66516	0	23.576233						198	7	3	NaN	NaN	NaN	0.84887	1	2430	2430		0.32989	0	1	15116	+		25104	9276	14491	14907	19970	19970					-0.042795739128791865
SSSASLGG	8	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.158668	664.302784	1.7645	0.00058787	4.0289	0.0013423	5.7934	0.0019301	333.15984244899687	28.436	0.14483	28.436	28.412	28.556	0	1512	94	0.7060759	0.057667494	0.7060759	288.66516		23.576233	-0.14025	0.00081007	0.0072699	NaN	0.32989	198	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15116	+		25105	9276	14491	14907							-0.042795739128791865
SSSASLGG	8	Unmodified						0	0	0			REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	REV__nc|ENSG00000118900|Q9NPG3-2|UBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	333.158668	664.302784	3.4285	0.0011422	-0.81932	-0.00027296	2.6092	0.00086928	333.1584982116608	28.725	0.048269	28.716	28.692	28.74	-0.0083504	1533	25	0.6930556	0.014882743	0.6915362	283.3421		6.084503	0.14025	-0.0024204	-0.0072699	NaN	0.32989	22	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186.3	+		25106	9276	14491	14907							-0.042795739128791865
SSSGAGAQ	8	Unmodified	_SSSGAGAQ_					0	0	0			REV__nc|ENSG00000168591|Q71RG4-3|TMUB2	REV__nc|ENSG00000168591|Q71RG4-3|TMUB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	332.6484676917	2	332.648468	663.282382	1.5593	0.00051869	-1.2244	-0.0004073	0.33487	0.00011139	332.6467958543906	34.516	0.072372	34.515	34.491	34.563	-0.0006485	1533	67	0.6930556	0.04092753	0.6915362	283.3509	0	16.73294						134	4	3	NaN	NaN	NaN	0.84887	1	2323	2323		0.32989	0	1	11720	+		25107	10519	14492	14908	19971	19971					-0.06272744572709144
SSSGGCGCC	9	Unmodified	_SSSGGCGCC_					0	0	0		ENSG00000187170|ENST00000368777|LCE4A	ENSG00000187170|ENST00000368777|LCE4A	ENSG00000187170|ENST00000368777|LCE4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.2058709867999	1	760.205871	759.198595	0.019517	1.4837E-05	-6.0301	-0.0045841	-6.0106	-0.0045693	760.2028017437256	58.77	0.095982	58.77	58.77	58.866	-0.00045395	618	79	1.2513325	0.046835184	1.2498131	255.15323	0	9.549927						104	5	2	NaN	NaN	NaN	0.6907	1	4127	4127		0	0	1	6819.2			25108	5499	14493	14909	19972	19972					-0.19063683327942726
SSSGGCGCC	9	Unmodified	_SSSGGCGCC_					0	0	0		ENSG00000187170|ENST00000368777|LCE4A	ENSG00000187170|ENST00000368777|LCE4A	ENSG00000187170|ENST00000368777|LCE4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	760.2058709867999	1	760.205871	759.198595	0.29182	0.00022184	-4.7514	-0.0036121	-4.4596	-0.0033902	760.2035007781379	58.722	0.048008	58.722	58.674	58.722	-0.00045395	615	40	1.2531329	0.023406267	1.2516136	255.52036	0	4.7726593						54	3	2	NaN	NaN	NaN	0.6907	1	4128	4128		0	0	1	4257.6			25109	5499	14493	14909	19973	19973					-0.19063683327942726
SSSGSKNE	8	Unmodified	_SSSGSKNE_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3479020772	1	795.347902	794.340626	-0.20947	-0.00016661	6.4258	0.0051107	6.2163	0.0049441	795.3558324978854	55.194	0.1203	55.193	55.169	55.29	-0.0006218	513	85	1.3142352	0.050233483	1.3127158	267.76886	0	10.234833						211	6	3	NaN	NaN	NaN	0.84455	1	4585	4585		2.7852	0	1	20557	+		25110	9050	14494	14910	19974	19974					-0.06477107718080788
SSSGSKSI	8	Unmodified	_SSSGSKSI_					0	0	0		ENST00000488423.1_1_3:16302099-16302234:-|nuORF	ENST00000488423.1_1_3:16302099-16302234:-|nuORF	ENST00000488423.1_1_3:16302099-16302234:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.3784739241001	1	752.378474	751.371197	1.9201	0.0014446	4.5357	0.0034126	6.4558	0.0048572	752.3821756965181	23.272	0.14477	23.258	23.21	23.355	-0.013294	543	70	1.296287	0.041309595	1.2947675	264.36847	0	8.424805						203	7	4	NaN	NaN	NaN	0.84512	1	4004	4004		2.4615	0	1	28354			25111	7250	14495	14911	19975	19975					-0.014433293330284869
SSSGSQLI	8	Unmodified	_SSSGSQLI_					0	0	0		ENSG00000069248|ENST00000261396|NUP133;NUP133|p.T387Mfs*2|1|0.39|ENSG00000069248|chr1:229489989-229489989|G/-|frameshift_variant	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	778.3941239883001	1	778.394124	777.386848	1.9089	0.0014858	4.8431	0.0037698	6.7519	0.0052557	778.3977611084615	27.808	0.19302	27.808	27.76	27.953	0	525	97	1.3070582	0.05745876	1.3070582	266.40524	0	11.711273						387	9	3	NaN	NaN	NaN	0.72043	1	4459	4459		17.78	5.1924	1	70467			25112	741	14496	14912	19976	19976					-0.01075042815989491
SSSHEAKNVQA	11	Unmodified	_SSSHEAKNVQA_					0	0	0			REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	REV__ENST00000590187.2_1_19:19337677-19349276:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2809086379501	2	579.280909	1156.54726	1.8064	0.0010464	-9.0287	-0.0052301	-7.2223	-0.0041837	579.2762288588634	19.442	0.16819	19.428	19.26	19.428	-0.014141	1218	37	0.8873258	0.022076428	0.8858064	359.64294	0	8.947815						88	8	2	NaN	NaN	NaN	0.74794	1	14532	14532		4.3102	0.34164	1	6151.3	+		25113	9480	14497	14913	19977	19977					-0.024747398897488893
SSSNGGPV	8	Unmodified	_SSSNGGPV_					0	0	0			REV__ENSG00000131374|ENST00000696125|TBC1D5	REV__ENSG00000131374|ENST00000696125|TBC1D5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3209590452	1	704.320959	703.313683	1.6426	0.0011569	-3.3852	-0.0023843	-1.7426	-0.0012274	704.3199793805493	34.275	0.048244	34.274	34.249	34.298	-0.0012474	1056	31	0.9863805	0.018290102	0.9848611	201.41151	0	3.7346954						41	3	2	NaN	NaN	NaN	0.84727	1	3211	3211		1.2418	0	1	2843.5	+		25114	9514	14498	14914	19978	19978					-0.04984171538615101
SSSPGVGA	8	Unmodified	_SSSPGVGA_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;MAPKAPK2-SRGAP2|2|fusion	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3151453858001	1	661.315145	660.307869	2.036	0.0013464	6.8178	0.0045087	8.8538	0.0058552	661.3235646104375	25.346	0.14473	25.334	25.262	25.407	-0.012011	1128	79	0.9424274	0.047677517	0.94090796	192.67578	0	9.747498						214	7	3	NaN	NaN	NaN	0.84651	1	2225	2225		1.6704	0	1	36424			25115	6162	14499	14915	19979	19979					-0.035872700502750376
SSSSAETE	8	Unmodified	_SSSSAETE_					0	0	0			REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.3159332467999	1	797.315933	796.308657	2.0491	0.0016338	-2.0682	-0.001649	-0.01905	-1.5189E-05	797.3148517724896	54.5	0.024025	54.5	54.476	54.5	0	531	40	1.3034686	0.023338914	1.3034686	265.5641	0	4.7549744						50	2	2	NaN	NaN	NaN	0.84692	1	4698	4698		1.4396	0	1	4227.7	+		25116	10286	14500	14916	19980	19980					-0.09764520191902193
SSSSAETE	8	Unmodified						0	0	0			REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	797.315933	796.308657	2.0491	0.0016338	-2.0682	-0.001649	-0.01905	-1.5189E-05	797.3148517724896	54.5	0.024025	54.5	54.476	54.5	0	531	40	1.3034686	0.023338914	1.3034686	265.5641		4.7549744	0.0013491	0.00074897	0.0016573	NaN	1.4396	50	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4227.7	+		25117	10286	14500	14916							-0.09764520191902193
SSSSAETE	8	Unmodified						0	0	0			REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	REV__nc|ENSG00000163605|Q9NY27-2|PPP4R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	797.315933	796.308657	0.21119	0.00016838	-3.7228	-0.0029683	-3.5117	-0.0027999	797.3143858311134	54.497	0.0723	54.497	54.497	54.569	-0.00061798	534	49	1.3016734	0.02872324	1.300154	265.19836		5.851959	-0.0013491	-0.00057033	-0.0016573	NaN	1.4396	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4937.4	+		25118	10286	14500	14916							-0.09764520191902193
SSSSGLGK	8	Unmodified	_SSSSGLGK_					0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3679092378001	1	722.367909	721.360633	1.684	0.0012165	3.0369	0.0021938	4.721	0.0034103	722.3710813429361	23.585	0.19282	23.572	23.548	23.741	-0.013048	615	94	1.2531329	0.05581498	1.2516136	255.75804	0	11.391571						244	9	3	NaN	NaN	NaN	0.80071	1	3539	3539		9.1232	0	1	33643			25119	7144	14501	14917	19981	19981					-0.011193119874747026
SSSSGLGK	8	Unmodified						0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.367909	721.360633	1.5804	0.0011416	2.4242	0.0017511	4.0046	0.0028928	722.3712004990296	23.586	0.2168	23.586	23.538	23.754	0	615	94	1.2531329	0.05581498	1.2531329	255.75804		11.391571	0.006684	-0.00024195	0.00075972	NaN	9.1232	260	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37182			25120	7144	14501	14917							-0.011193119874747026
SSSSGLSF	8	Unmodified	_SSSSGLSF_					0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.3519248226	1	771.351925	770.344648	1.831	0.0014123	4.6372	0.0035769	6.4682	0.0049892	771.3556668824616	26.311	0.14476	26.3	26.252	26.397	-0.011135	543	49	1.296287	0.028732419	1.2947675	264.25174	0	5.8571777						180	7	3	NaN	NaN	NaN	0.72043	1	4283	4283		17.78	0	1	18538			25121	3181	14502	14918	19982	19982					-0.04971018224375712
SSSSGLSF	8	Unmodified						0	0	0		nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	771.351925	770.344648	2.087	0.0016098	5.215	0.0040226	7.3021	0.0056325	771.3561341366051	26.312	0.14483	26.312	26.263	26.408	0	546	55	1.294491	0.032327414	1.294491	263.88565		6.590027	0.0056994	0.0002601	-0.00013822	NaN	17.78	137	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17888			25122	3181	14502	14918							-0.04971018224375712
SSSSIGSN	8	Unmodified	_SSSSIGSN_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000497898.2_1_6:142759254-142764649:+|nuORF;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3264383536	1	738.326438	737.319162	1.1862	0.00087583	-8.1144	-0.0059911	-6.9282	-0.0051152	738.32084658978	42.936	0.095955	42.946	42.922	43.018	0.010418	675	61	1.2170867	0.036073327	1.2155672	248.301	0	7.3594055						82	5	2	NaN	NaN	NaN	0.83211	1	3796	3796		4.9097	0	1	4349.7			25123	1873	14503	14919	19983	19983					-0.0600049274680714
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.3962	0.00046585	2.9402	0.00098101	4.3364	0.0014469	333.6574090232212	37.338	0.048073	37.338	37.338	37.386	0	1533	34	0.6930556	0.020467103	0.6930556	283.33356	0	8.36734						37	3	2	NaN	NaN	NaN	0.84945	1	2453	2453		0	0	1	2407.3	+		25124	9644	14504	14920	19984	19984					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.7236	0.00057509	3.0684	0.0010238	4.792	0.0015989	333.65768505000864	34.469	0.12067	34.469	34.421	34.541	0	1548	37	0.6837494	0.022341132	0.6837494	279.529	0	9.133453						83	6	2	NaN	NaN	NaN	0.84945	1	2454	2454		0	0	1	6192.9	+		25125	9644	14504	14920	19985	19985					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.0462	0.00034909	4.2207	0.0014083	5.2669	0.0017573	333.6582300068962	35.096	0.16892	35.096	35.072	35.241	0	1533	82	0.6930556	0.05021012	0.6930556	283.33356	0	20.526794						406	8	4	NaN	NaN	NaN	0.84945	1	2456	2456		0	0	1	96575	+		25126	9644	14504	14920	19986	19986					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	1.1158	0.0003723	5.0677	0.0016909	6.1835	0.0020632	333.65811840536827	34.999	0.1205	34.999	34.903	35.023	0	1533	61	0.6930556	0.03721088	0.6930556	283.33356	0	15.212463						150	6	3	NaN	NaN	NaN	0.84945	1	2459	2459		0	0	1	34290	+		25127	9644	14504	14920	19987	19987					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.65629272380005	2	333.656293	665.298033	0.85509	0.0002853	5.3574	0.0017875	6.2125	0.0020728	333.65824012395495	38.155	0.24025	38.155	38.083	38.324	0	1536	79	0.69119483	0.04837942	0.69119483	282.5728	0	19.778381						259	11	2	NaN	NaN	NaN	0.84945	1	2460	2460		0	0	1	20927	+		25128	9644	14504	14920	19988	19988					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3053089810002	1	666.305309	665.298033	1.7569	0.0011706	6.1187	0.0040769	7.8755	0.0052475	666.3092079688881	22.573	0.048273	22.573	22.573	22.621	0	786	55	1.1501974	0.032601833	1.1501974	235.11778	0	6.6643066						86	3	3	NaN	NaN	NaN	0.84945	1	2464	2464		0	0	1	14716	+		25129	9644	14504	14920	19989	19989					-0.04800458055649415
SSSSKGGG	8	Unmodified	_SSSSKGGG_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.65629272380005	2	333.656293	665.298033	1.7866	0.0005961	3.8222	0.0012753	5.6088	0.0018714	333.6578741719563	38.153	0.14423	38.156	38.084	38.228	0.0034256	1536	76	0.69119483	0.046506047	0.6896754	282.5728	0	19.012512						194	7	2	NaN	NaN	NaN	0.84945	1	2368	2368		0	0	1	18213	+		25130	9644	14504	14920	19990	19990					-0.04800458055649415
SSSSKGGG	8	Unmodified						0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.656293	665.298033	1.3962	0.00046585	2.9402	0.00098101	4.3364	0.0014469	333.6574090232212	37.338	0.048073	37.338	37.338	37.386	0	1533	34	0.6930556	0.020467103	0.6930556	283.33356		8.36734	0	0	0	NaN	0	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2407.3	+		25131	9644	14504	14920							-0.04800458055649415
SSSSSSKS	8	Unmodified	_SSSSSSKS_					0	0	0			REV__nc|ENSG00000145088|Q96CJ1-2|EAF2	REV__nc|ENSG00000145088|Q96CJ1-2|EAF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3370030399001	1	756.337003	755.329727	0.95309	0.00072085	-8.9913	-0.0068004	-8.0382	-0.0060796	756.330626042335	41.833	0.16848	41.842	41.674	41.842	0.0089951	669	106	1.2206948	0.063097835	1.2191753	248.92868	0	12.867157						280	8	3	NaN	NaN	NaN	0.84512	1	4077	4077		2.4615	1.0219	1	21556	+		25132	9921	14505	14921	19991	19991					-0.05772510092367611
SSSSSSKS	8	Unmodified						0	0	0			REV__nc|ENSG00000145088|Q96CJ1-2|EAF2	REV__nc|ENSG00000145088|Q96CJ1-2|EAF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	756.337003	755.329727	0.95309	0.00072085	-8.9913	-0.0068004	-8.0382	-0.0060796	756.330626042335	41.833	0.16848	41.842	41.674	41.842	0.0089951	669	106	1.2206948	0.063097835	1.2191753	248.92868		12.867157	0.015753	-0.00063382	-0.0016616	NaN	2.4615	280	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21556	+		25133	9921	14505	14921							-0.05772510092367611
SSSTAAQVCV	10	Unmodified	_SSSTAAQVCV_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.72384936025	2	476.723849	951.433146	2.1224	0.0010118	4.1219	0.001965	6.2443	0.0029768	476.7261625371195	18.58	0.095989	18.58	18.556	18.652	0	1344	55	0.8098828	0.03327614	0.8098828	329.0869	0	13.521393						132	5	2	NaN	NaN	NaN	0.71736	1	7115	7115		6.8632	0	1	14482	+		25134	11180	14506	14922	19992	19992					-0.04451345976212906
SSSVGGSF	8	Unmodified	_SSSVGGSF_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3257100721	1	727.32571	726.318434	1.1688	0.00085012	6.8873	0.0050093	8.0562	0.0058595	727.3305219196983	26.842	0.12066	26.832	26.808	26.928	-0.010645	654	67	1.2297117	0.039676428	1.2281922	250.94592	0	8.09671						143	6	2	NaN	NaN	NaN	0.80692	1	3622	3622		8.2903	0	1	11872	+		25135	8550	14507	14923	19993	19993					-0.05567287395854237
SSTWLRDFQM	10	Unmodified	_SSTWLRDFQM_					0	0	0		nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38	nc|nan|Q8TB03-2|CXorf38	nc|nan|Q8TB03-2|CXorf38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.7978799706	2	635.79788	1269.58121	1.4634	0.00093042	-3.5521	-0.0022584	-2.0888	-0.001328	635.7957658325142	26.553	0.16888	26.542	26.446	26.614	-0.010645	1143	64	0.9332562	0.0385316	0.93173677	377.8619	0	15.600891						170	8	3	NaN	NaN	NaN	0.73114	1	17407	17407		5.9198	1.3023	1	16593			25136	5435	14508	14924	19994	19994					-0.04280034722387427
SSVAEFMI	8	Unmodified	_SSVAEFMI_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.4229812757002	1	883.422981	882.415705	2.4254	0.0021426	-1.8277	-0.0016147	0.59762	0.00052795	883.4222949646432	26.36	0.024109	26.36	26.36	26.384	0	417	31	1.3715409	0.017875552	1.3715409	278.9703	0	3.6358948						33	2	2	NaN	NaN	NaN	0.82797	1	5832	5832		5.4659	0	1	2190.6			25137	4907	14509	14925	19995	19995					-0.03020641511204758
SSVAEFMI	8	Unmodified						0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	883.422981	882.415705	2.0137	0.0017789	-4.8178	-0.0042562	-2.8041	-0.0024772	883.4190996839664	26.263	0.14472	26.252	26.228	26.373	-0.011137	402	64	1.3804773	0.037516832	1.3789579	280.788		7.6309204	-0.053958	-0.0010364	0.0037085	NaN	5.4659	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6870.2			25138	4907	14509	14925							-0.03020641511204758
SSVCCSVGH	9	Unmodified	_SSVCCSVGH_					0	0	0		ENST00000337929.7_1_16:27413553-27413916:+|nuORF	ENST00000337929.7_1_16:27413553-27413916:+|nuORF	ENST00000337929.7_1_16:27413553-27413916:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.6783876116	2	439.678388	877.342222	0.73855	0.00032473	4.2682	0.0018767	5.0068	0.0022014	439.6804768746516	35.119	0.14482	35.119	35.094	35.239	-4.5776E-05	1365	43	0.7969414	0.025895417	0.79542196	324.21747	0	10.534973						154	7	3	NaN	NaN	NaN	0.62619	1	5638	5638		4.4131	0	1	14530			25139	6533	14510	14926	19996	19996					-0.10135513225338855
SSVLEFMSM	9	Unmodified	_SSVLEFMSM_					0	0	0		ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9	ENSG00000028310|ENST00000467963|BRD9	ENSG00000028310|ENST00000467963|BRD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.458380504	1	1030.45838	1029.4511	1.3338	0.0013745	-0.0071599	-7.3779E-06	1.3267	0.0013671	1030.457941479733	32.249	0.096519	32.249	32.225	32.321	0	195	43	1.5033154	0.024832487	1.5033154	305.1019	0	5.0398254						90	5	2	NaN	NaN	NaN	0.023828	1	9740	9740		67.154	41.039	1	8356.2			25140	485	14511	14927	19997	19997					-0.062443470457083095
SSVLEFMSM	9	Unmodified	_SSVLEFMSM_					0	0	0		ENSG00000028310|ENST00000467963|BRD9;nc|ENSG00000028310|Q9H8M2-2|BRD9;ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9	ENSG00000028310|ENST00000467963|BRD9	ENSG00000028310|ENST00000467963|BRD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.458380504	1	1030.45838	1029.4511	0.92544	0.00095362	-0.94536	-0.00097415	-0.019919	-2.0526E-05	1030.4594074494885	32.248	0.096561	32.244	32.22	32.316	-0.0037613	195	43	1.5033154	0.024832487	1.501796	305.10193	0	5.039795						102	5	3	NaN	NaN	NaN	0.39244	1	9544	9544		14.042	3.99	1	9348.9			25141	485	14511	14927	19998	19998					-0.062443470457083095
SSVVIKFL	8	Unmodified	_SSVVIKFL_					0	0	0		tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	tr|U7SND5|U7SND5_FUSNUNucleosidetransporter/FeoBGTPaseGatedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01804PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.5502306998	1	892.550231	891.542954	-0.34376	-0.00030682	-7.1901	-0.0064175	-7.5339	-0.0067243	892.5430579835187	58.362	0.071964	58.362	58.314	58.386	-0.00048065	330	58	1.4233059	0.0338645	1.4217864	289.4538	0	6.8869324						131	4	3	NaN	NaN	NaN	0.84692	1	5833	5833		1.4396	0	1	13261			25142	13784	14512	14928	19999	19999					0.09284447425261533
SSYQLLVQVQ	10	Unmodified	_SSYQLLVQVQ_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.8165956525002	2	582.816596	1163.61864	1.8869	0.0010997	-2.0604	-0.0012008	-0.17351	-0.00010113	582.8164969554185	15.27	0.09612	15.27	15.27	15.366	0	1203	31	0.8965218	0.018385053	0.8965218	363.34415	0	7.451111						69	5	2	NaN	NaN	NaN	0.69717	1	15278	15278		8.2448	1.2605	1	5080.9			25143	4472	14513	14929	20000	20000					0.043373798149104914
SSYSQIEKPKI	11	Unmodified	_SSYSQIEKPKI_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.3482599216501	2	640.34826	1278.68197	1.6948	0.0010853	-3.3877	-0.0021693	-1.6928	-0.001084	640.3480919287	35.048	0.19303	35.048	34.975	35.168	0	1206	85	0.894683	0.051489294	0.894683	362.21643	0	20.845703						1046	9	8	NaN	NaN	NaN	0.74155	1	18399	18399		4.7291	0.41892	1	937200			25144	22	14514	14930	20001	20001					0.05377320532147678
STADWAWEAVN	11	Unmodified	_STADWAWEAVN_					0	0	0		nc|ENSG00000141255|Q8NHS9-2|SPATA22	nc|ENSG00000141255|Q8NHS9-2|SPATA22	nc|ENSG00000141255|Q8NHS9-2|SPATA22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.27783463275	2	625.277835	1248.54112	1.3165	0.00082315	-0.21799	-0.0001363	1.0985	0.00068685	625.2782848085411	20.67	0.26504	20.67	20.597	20.862	0	1182	67	0.9093879	0.040403485	0.9093879	368.2647	0	16.361755						258	12	4	NaN	NaN	NaN	0.7072	1	17735	17735		6.9844	0	1	29070			25145	7950	14515	14931	20002	20002					-0.07321258121282881
STAGFDPLL	9	Unmodified	_STAGFDPLL_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4723743093001	1	920.472374	919.465098	1.6241	0.001495	-0.31919	-0.00029381	1.3049	0.0012012	920.4718712817383	28.918	0.16897	28.918	28.894	29.063	0	330	103	1.4233059	0.060596347	1.4233059	289.32013	0	12.317627						327	8	4	NaN	NaN	NaN	0.016254	1	6404	6404		76.739	37.28	1	50159			25146	2891	14516	14932	20003	20003					0.002143897692462815
STAGFDPLL	9	Unmodified						0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	920.472374	919.465098	1.0706	0.0009855	0.19227	0.00017698	1.2629	0.0011625	920.4729561267181	28.918	0.16893	28.909	28.885	29.054	-0.0083504	327	88	1.425088	0.051687837	1.4235686	289.6824		10.506744	-0.0045493	0.00017589	0.00013136	NaN	76.739	341	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52171			25147	2891	14516	14932							0.002143897692462815
STAGGKVW	8	Unmodified	_STAGGKVW_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4202791593001	1	805.420279	804.413003	1.6971	0.0013669	4.4707	0.0036008	6.1678	0.0049677	805.4234928528751	26.891	0.21716	26.891	26.867	27.084	0	549	106	1.292695	0.062835455	1.292695	263.32413	0	12.799713						291	10	2	NaN	NaN	NaN	0.40747	1	4795	4795		36.036	18.256	1	40456			25148	3781	14517	14933	20004	20004					0.0029727114614388483
STAGGNII	8	Unmodified	_STAGGNII_					0	0	0			REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3886446799	1	732.388645	731.381368	1.6223	0.0011881	4.5802	0.0033545	6.2025	0.0045426	732.392292275693	29.594	0.45858	29.594	29.425	29.884	0	594	106	1.265731	0.06301701	1.265731	258.26324	0	12.85817						778	20	3	NaN	NaN	NaN	0.74229	1	3771	3771		16.417	0	1	162310	+		25149	9495	14518	14934	20005	20005					0.00493278392184493
STAGGNII	8	Unmodified						0	0	0			REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	732.388645	731.381368	1.6223	0.0011881	4.5802	0.0033545	6.2025	0.0045426	732.392292275693	29.594	0.45858	29.594	29.425	29.884	0	594	106	1.265731	0.06301701	1.265731	258.26324		12.85817	0.016034	-0.00014075	0.00075972	NaN	16.417	778	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162310	+		25150	9495	14518	14934							0.00493278392184493
STAGGNII	8	Unmodified						0	0	0			REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	REV__ENST00000541712.5_1_12:123343395-123344723:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	732.388645	731.381368	1.4409	0.0010553	4.8967	0.0035863	6.3376	0.0046416	732.3922969915371	29.569	0.43431	29.562	29.417	29.852	-0.0070667	594	124	1.265731	0.07383573	1.2642115	258.26324		15.065643	-0.016034	9.1094E-05	-0.00075972	NaN	16.417	746	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172500	+		25151	9495	14518	14934							0.00493278392184493
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.3165658627501	2	508.316566	1014.61858	2.0105	0.001022	-3.6374	-0.0018489	-1.6269	-0.00082696	508.3152125200998	14.045	0.14411	14.045	14.021	14.165	0	1278	55	0.85049206	0.03317547	0.85049206	345.28143	0	13.468506						136	7	2	NaN	NaN	NaN	0.46215	1	9174	9174		11.17	3.5827	1	17441			25152	1802	14519	14935	20006	20006					0.11185424605582739
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	339.21346939736674	3	339.213469	1014.61858	1.9911	0.00067541	-2.5042	-0.00084945	-0.51306	-0.00017404	339.2125622588238	14.069	0.096041	14.069	14.045	14.141	0	1443	40	0.7487872	0.024112344	0.7487872	455.9811	0	14.683472						84	5	2	NaN	NaN	NaN	0.056143	1	9175	9175		31.675	21.929	1	9635.9			25153	1802	14519	14935	20007	20007					0.11185424605582739
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.3165658627501	2	508.316566	1014.61858	1.1913	0.00060558	-2.0007	-0.001017	-0.8094	-0.00041143	508.31530434309946	14.141	0.11978	14.13	14.082	14.202	-0.010673	1278	43	0.85049206	0.02580595	0.8489726	345.2814	0	10.476654						125	6	3	NaN	NaN	NaN	0.10945	1	8998	8998		34.454	12.328	1	12457			25154	1802	14519	14935	20008	20008					0.11185424605582739
STAKIQIVR	9	Unmodified	_STAKIQIVR_					0	0	0		nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2	nc|ENSG00000111335|P29728|OAS2	nc|ENSG00000111335|P29728|OAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	339.21346939736674	3	339.213469	1014.61858	1.7481	0.00059297	0.60008	0.00020356	2.3481	0.00079652	339.2135184102883	14.141	0.11978	14.13	14.082	14.202	-0.010673	1440	40	0.7506418	0.024109721	0.7491224	457.11047	0	14.681854						89	6	2	NaN	NaN	NaN	0.10956	1	8999	8999		30.035	17.033	1	10240			25155	1802	14519	14935	20009	20009					0.11185424605582739
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.8806017252	3	372.880602	1115.61998	1.6484	0.00061467	-0.48896	-0.00018232	1.1595	0.00043235	373.2148171332792	12.99	0.16775	12.98	12.909	13.076	-0.00947	1479	31	0.72651637	0.018573165	0.7249969	441.88367	0	11.2966						78	8	2	NaN	NaN	NaN	0.064504	1	13123	13123		30.925	14.341	1	5362.7			25156	1530	14520	14936	20010	20010					0.06679058694317064
STDDGVQF	8	Unmodified	_STDDGVQF_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;EFTUD2|p.H491Y|1|0.25|ENSG00000108883|chr17:44862849-44862849|G/A|missense_variant;ENST00000586276.5_1_17:42937766-42940268:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.3683031683	1	868.368303	867.361027	1.1587	0.0010062	-0.21042	-0.00018272	0.94825	0.00082343	868.3681594379158	20.453	0.2167	20.439	20.367	20.584	-0.014143	459	52	1.3464937	0.030442119	1.3449743	273.9487	0	6.1935425						161	10	2	NaN	NaN	NaN	0.55996	1	5483	5483		27.789	8.6705	1	14234			25157	1702	14521	14937	20011	20011					-0.07795937058278923
STDHIPILYR	10	Unmodified	_STDHIPILYR_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.5557837413667	3	405.555784	1213.64552	1.4659	0.00059452	-2.0582	-0.00083472	-0.59226	-0.00024019	405.5551028408043	19.732	0.12003	19.732	19.66	19.78	0	1455	34	0.7413668	0.020409405	0.7413668	450.47205	0	12.401245						103	6	3	NaN	NaN	NaN	0.2055	1	16823	16823		35.056	21.955	1	6234.3			25158	5774	14522	14938	20012	20012					0.04724488426109019
STDHIPILYR	10	Unmodified	_STDHIPILYR_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.5557837413667	3	405.555784	1213.64552	1.633	0.00066228	-2.195	-0.00089021	-0.56202	-0.00022793	405.55564868733427	19.779	0.12033	19.765	19.693	19.813	-0.014141	1455	37	0.7413668	0.02226597	0.73984736	450.47205	0	13.529358						73	6	2	NaN	NaN	NaN	0.68699	1	16155	16155		8.9416	2.3242	1	5816.8			25159	5774	14522	14938	20013	20013					0.04724488426109019
STDPALIL	8	Unmodified	_STDPALIL_					0	0	0		ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	829.4665606499001	1	829.466561	828.459284	2.2838	0.0018944	-3.4163	-0.0028337	-1.1325	-0.00093934	829.4638792268735	28.194	0.048307	28.185	28.161	28.209	-0.0089779	441	31	1.3572328	0.017892838	1.3557134	276.3359	0	3.6430054						35	3	2	NaN	NaN	NaN	0.77489	1	5006	5006		12.588	0	1	2072.9			25160	2344	14523	14939	20014	20014					0.03819291257570967
STDYETHEF	9	Unmodified	_STDYETHEF_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.72764325945	2	564.727643	1127.44073	2.0354	0.0011494	-0.92923	-0.00052476	1.1061	0.00062467	564.7274614344371	16.542	0.095898	16.542	16.542	16.638	0	1248	31	0.8689189	0.018418849	0.8689189	352.28952	0	7.4676514						75	5	2	NaN	NaN	NaN	0.56671	1	13984	13984		6.8632	3.9737	1	6367.5			25161	4198	14524	14940	20015	20015					-0.11788915174952308
STFPLSPPL	9	Unmodified	_STFPLSPPL_					0	0	0		ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.76584317320004	2	479.765843	957.517133	1.4371	0.0006895	-6.0816	-0.0029177	-4.6444	-0.0022282	479.76389152981636	57.139	0.024017	57.138	57.114	57.138	-0.00053787	1359	28	0.8006399	0.01664257	0.7991205	325.3018	0	6.761902						29	2	2	NaN	NaN	NaN	0.67818	1	7141	7141		1.072	0.67635	1	1509.6			25162	6713	14525	14941	20016	20016					0.03667553183004202
STFTGLDD	8	Unmodified	_STFTGLDD_					0	0	0			REV__ENSG00000107611|ENST00000377833|CUBN	REV__ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.3730541951999	1	855.373054	854.365778	1.923	0.0016449	-7.1945	-0.006154	-5.2715	-0.0045091	855.3670147914328	28.001	0.16888	28.001	27.977	28.146	0	450	55	1.3518641	0.032217383	1.3518641	275.10663	0	6.556305						168	8	3	NaN	NaN	NaN	0.77489	1	5450	5450		12.588	0	1	12591	+		25163	9017	14526	14942	20017	20017					-0.0672305291552675
STGAGSTL	8	Unmodified	_STGAGSTL_					0	0	0			REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3413601363001	1	693.34136	692.334084	1.8106	0.0012553	6.0765	0.0042131	7.8871	0.0054684	693.3456451148326	25.371	0.19304	25.371	25.346	25.539	0	705	91	1.1990347	0.05418527	1.1990347	244.90799	0	11.067566						260	9	3	NaN	NaN	NaN	0.77489	1	3085	3085		12.588	0	1	23767	+		25164	8658	14527	14943	20018	20018					-0.02439000878803199
STGAGSTL	8	Unmodified	_STGAGSTL_					0	0	0			REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3413601363001	1	693.34136	692.334084	1.5931	0.0011046	8.2968	0.0057525	9.89	0.0068571	693.3476764183342	25.394	0.16889	25.382	25.31	25.479	-0.012011	702	73	1.2008407	0.043343544	1.1993213	245.27687	0	8.853104						225	8	2	NaN	NaN	NaN	0.77489	1	3018	3018		12.588	0	1	23853	+		25165	8658	14527	14943	20019	20019					-0.02439000878803199
STGAGSTL	8	Unmodified						0	0	0			REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.34136	692.334084	1.8106	0.0012553	6.0765	0.0042131	7.8871	0.0054684	693.3456451148326	25.371	0.19304	25.371	25.346	25.539	0	705	91	1.1990347	0.05418527	1.1990347	244.90799		11.067566	-0.0059251	-0.00067031	-0.00014332	NaN	12.588	260	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23767	+		25166	8658	14527	14943							-0.02439000878803199
STGAGSTL	8	Unmodified						0	0	0			REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	REV__ENST00000515715.2_1_5:88027515-88044929:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	693.34136	692.334084	1.5931	0.0011046	8.2968	0.0057525	9.89	0.0068571	693.3476764183342	25.394	0.16889	25.382	25.31	25.479	-0.012011	702	73	1.2008407	0.043343544	1.1993213	245.27687		8.853104	0.0059251	0.00086916	0.00014332	NaN	12.588	225	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23853	+		25167	8658	14527	14943							-0.02439000878803199
STGFSGFE	8	Unmodified	_STGFSGFE_					0	0	0			REV__ENST00000380336.5_1_X:15715706-15715868:+|nuORF	REV__ENST00000380336.5_1_X:15715706-15715868:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.3519248226002	1	831.351925	830.344648	2.2696	0.0018868	3.9006	0.0032427	6.1702	0.0051296	831.3547951623937	26.119	0.2172	26.119	26.07	26.288	0	486	64	1.3303722	0.037644982	1.3303722	270.85693	0	7.664337						242	10	3	NaN	NaN	NaN	0.80071	1	5133	5133		9.1232	0	1	24036	+		25168	11965	14528	14944	20020	20020					-0.07731018224365016
STGGKRRR	8	Unmodified	_STGGKRRR_					0	0	0		ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-6|PHTF2;nc|ENSG00000006576|Q8N3S3-5|PHTF2;nc|ENSG00000006576|Q8N3S3-7|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	ENST00000454592.5_1_7:77538159-77567164:+|nuORF	ENST00000454592.5_1_7:77538159-77567164:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	917.5387715861001	1	917.538772	916.531495	0.45444	0.00041696	-6.2262	-0.0057127	-5.7717	-0.0052958	917.5327683903389	57.355	0.047909	57.354	57.354	57.402	-0.00053787	345	37	1.4143922	0.021398306	1.4128729	287.52185	0	4.3499146						51	3	2	NaN	NaN	NaN	0.84692	1	6228	6228		1.4396	0	1	3014.5			25169	348	14529	14945	20021	20021					0.06989063174512467
STGKSSVL	8	Unmodified	_STGKSSVL_					0	0	0		tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	778.4305094946002	1	778.430509	777.423233	1.4805	0.0011524	3.4282	0.0026686	4.9086	0.003821	778.4329610532477	24.574	0.12059	24.574	24.55	24.671	0	510	61	1.316029	0.035873532	1.316029	268.23346	0	7.311737						151	6	3	NaN	NaN	NaN	0.80692	1	4461	4461		8.2903	0	1	14657			25170	13906	14530	14946	20022	20022					0.025618340807341156
STGSGGGK	8	Unmodified	_STGSGGGK_					0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.65883541275	2	325.658835	649.303118	1.4322	0.00046641	3.6875	0.0012009	5.1197	0.0016673	325.6609633363664	41.594	0.21655	41.594	41.45	41.666	0	1533	88	0.6930556	0.053952873	0.6930556	283.4737	0	22.06781						575	10	5	NaN	NaN	NaN	0.84512	1	2039	2039		2.4615	0	1	171630	+		25171	10434	14531	14947	20023	20023					-0.03556154193040584
STGSGGGK	8	Unmodified	_STGSGGGK_					0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.65883541275	2	325.658835	649.303118	1.2816	0.00041736	4.1112	0.0013389	5.3928	0.0017562	325.66082866239276	40.128	0.31266	40.128	39.887	40.2	0	1536	73	0.69119483	0.044657946	0.69119483	282.71255	0	18.265991						687	14	5	NaN	NaN	NaN	0.84727	1	2041	2041		1.2418	0	1	193840	+		25172	10434	14531	14947	20024	20024					-0.03556154193040584
STGSGGGK	8	Unmodified						0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	325.658835	649.303118	1.4322	0.00046641	3.6875	0.0012009	5.1197	0.0016673	325.6609633363664	41.594	0.21655	41.594	41.45	41.666	0	1533	88	0.6930556	0.053952873	0.6930556	283.4737		22.06781	-0.015366	-0.00023166	0.00075972	NaN	2.4615	575	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171630	+		25173	10434	14531	14947							-0.03556154193040584
STGSGGGK	8	Unmodified						0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	325.658835	649.303118	1.2816	0.00041736	4.1112	0.0013389	5.3928	0.0017562	325.66082866239276	40.128	0.31266	40.128	39.887	40.2	0	1536	73	0.69119483	0.044657946	0.69119483	282.71255		18.265991	0.0099324	-0.00046717	-0.0001707	NaN	1.2418	687	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193840	+		25174	10434	14531	14947							-0.03556154193040584
STGSGGGK	8	Unmodified						0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	325.658835	649.303118	1.4806	0.00048217	4.1452	0.0013499	5.6258	0.0018321	325.66065968310187	41.617	0.33673	41.625	41.456	41.793	0.0082588	1533	79	0.6930556	0.048374176	0.6915362	283.4737		19.78601	0.015366	6.6467E-05	-0.00075972	NaN	2.4615	603	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223460	+		25175	10434	14531	14947							-0.03556154193040584
STGSGGTG	8	Unmodified	_STGSGGTG_					0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.2631098153001	1	623.26311	622.255833	1.6706	0.0010412	5.8171	0.0036256	7.4877	0.0046668	623.2672945312759	50.87	0.071838	50.87	50.798	50.87	0	660	43	1.2261056	0.02524054	1.2261056	250.98349	0	5.166733						64	4	2	NaN	NaN	NaN	0.84887	1	1183	1183		0.32989	0	1	3755.7	+		25176	10214	14532	14948	20025	20025					-0.07040433464032958
STGSGGTG	8	Unmodified						0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	623.26311	622.255833	1.6706	0.0010412	5.8171	0.0036256	7.4877	0.0046668	623.2672945312759	50.87	0.071838	50.87	50.798	50.87	0	660	43	1.2261056	0.02524054	1.2261056	250.98349		5.166733	-0.19099	-0.00047998	-0.0019448	NaN	0.32989	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3755.7	+		25177	10214	14532	14948							-0.07040433464032958
STGSGGTG	8	Unmodified						0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	623.26311	622.255833	-0.16019	-9.9843E-05	7.3467	0.0045789	7.1865	0.0044791	623.2690611556661	51.252	0.047894	51.252	51.252	51.3	0.00017166	651	43	1.2315145	0.025243282	1.229995	252.0907		5.167282	0.19099	0.00047339	0.0019448	NaN	0.32989	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3308.2	+		25178	10214	14532	14948							-0.07040433464032958
STGSSSGN	8	Unmodified	_STGSSSGN_					0	0	0		ENST00000476051.5_1_19:35994325-36001271:-|nuORF;ENST00000472065.1_1_19:36000896-36001341:-|nuORF;ENST00000486450.5_1_19:35991290-36001329:-|nuORF;ENST00000482321.5_1_19:35991290-36001371:-|nuORF;nc|ENSG00000161249|Q6E0U4-8|DMKN;nc|ENSG00000161249|Q6E0U4-7|DMKN;nc|ENSG00000161249|Q6E0U4-3|DMKN;nc|ENSG00000161249|Q6E0U4-5|DMKN;nc|ENSG00000161249|Q6E0U4-6|DMKN;nc|ENSG00000161249|Q6E0U4-4|DMKN;CON__A3EZ79;nc|ENSG00000161249|Q6E0U4-16|DMKN;nc|ENSG00000161249|Q6E0U4-2|DMKN;ENSG00000161249|ENST00000339686|DMKN;CON__A3EZ82	ENST00000476051.5_1_19:35994325-36001271:-|nuORF	ENST00000476051.5_1_19:35994325-36001271:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.2794881610001	1	696.279488	695.272212	0.94431	0.0006575	8.7975	0.0061255	9.7418	0.006783	696.2862983012716	37.07	0.096161	37.072	37	37.096	0.0022469	1083	43	0.9699114	0.02562821	0.96839195	198.09235	0	5.2342377						98	5	2	NaN	NaN	NaN	0.84887	1	3073	3073		0.32989	0	1	6758.2		+	25179	178	14533	14949	20026	20026					-0.08761352297926805
STIEMPQQAR	10	Unmodified	_STIEMPQQAR_					0	0	0		ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7900549385	2	580.790055	1159.56556	1.8947	0.0011004	-3.6093	-0.0020962	-1.7146	-0.00099583	580.7884816231862	16.134	0.19194	16.134	16.038	16.23	0	1260	61	0.8615505	0.03684169	0.8615505	349.1852	0	14.931885						213	9	3	NaN	NaN	NaN	0.66626	1	15121	15121		10.36	1.237	1	13944			25180	5780	14534	14950	20027	20027					-0.007843212394163857
STIEMPQQAR	10	Unmodified	_STIEMPQQAR_					0	0	0		ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7900549385	2	580.790055	1159.56556	2.1843	0.0012686	-2.5374	-0.0014737	-0.35317	-0.00020512	580.7885366714193	16.131	0.16783	16.118	16.046	16.214	-0.012995	1266	55	0.85786515	0.033157587	0.8563457	347.69156	0	13.43869						170	8	3	NaN	NaN	NaN	0.62092	1	14615	14615		13.463	1.7242	1	11628			25181	5780	14534	14950	20028	20028					-0.007843212394163857
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.80348827725	2	554.803488	1107.59242	1.4118	0.00078329	-1.1942	-0.00066252	0.21768	0.00012077	554.8030454644477	19.396	0.16796	19.396	19.348	19.516	0	1224	67	0.883646	0.040495276	0.883646	358.33795	0	16.421722						257	8	4	NaN	NaN	NaN	0.055351	1	13187	13187		44.638	16.85	1	45413			25182	1314	14535	14951	20029	20029					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.80348827725	2	554.803488	1107.59242	1.4758	0.00081875	-3.3487	-0.0018579	-1.8729	-0.0010391	554.801826479859	19.418	0.16835	19.404	19.356	19.524	-0.014141	1227	73	0.88180584	0.044186175	0.8802864	357.5917	0	17.918457						225	8	3	NaN	NaN	NaN	0.055351	1	12814	12814		44.638	21.304	1	42310			25183	1314	14535	14951	20030	20030					0.0429311064342528
STKRMKITR	9	Unmodified	_STKRMKITR_					0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8345998279	2	560.8346	1119.65465	1.3385	0.00075068	5.416	0.0030375	6.7545	0.0037882	560.8365725043465	21.994	0.24082	21.98	21.836	22.077	-0.013897	1185	49	0.90755045	0.029403389	0.906031	367.98294	0	11.92215						126	11	3	NaN	NaN	NaN	0.56671	1	13276	13276		6.8632	0.613	1	9723.9			25184	3068	14536	14952	20031	20031					0.09960558510738338
STLEVPRF	8	Unmodified	_STLEVPRF_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;IQCH|p.V876G|1|0.46|ENSG00000103599|chr15:67465248-67465248|T/G|missense_variant;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.76109214630003	2	474.761092	947.507631	1.5525	0.00073707	-5.4839	-0.0026036	-3.9314	-0.0018665	474.75877233234945	15.51	0.096053	15.51	15.51	15.606	0	1335	49	0.8154261	0.029569209	0.8154261	331.35898	0	12.015808						53	5	2	NaN	NaN	NaN	0.81756	1	7025	7025		6.8632	0	1	3578.2			25185	1451	14537	14953	20032	20032					0.03177784897479796
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2636730125	2	532.263673	1062.51279	1.7415	0.00092695	-1.6126	-0.00085833	0.12892	6.8618E-05	532.2630801583617	15.053	0.21622	15.053	14.981	15.198	0	1311	70	0.83019954	0.042439044	0.83019954	336.8397	0	17.218933						312	10	3	NaN	NaN	NaN	0.31086	1	11218	11218		27.296	13.833	1	37495			25186	6555	14538	14954	20033	20033					-0.015962793022254118
STMSTNGIPR	10	Unmodified	_STMSTNGIPR_					0	0	0		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2636730125	2	532.263673	1062.51279	0.74034	0.00039406	-1.9861	-0.0010571	-1.2458	-0.00066308	532.2625758199123	15.052	0.24032	15.04	14.968	15.208	-0.011738	1311	67	0.83019954	0.040596068	0.8286801	336.8397	0	16.471191						310	11	3	NaN	NaN	NaN	0.16973	1	10964	10964		38.131	26.392	1	34556			25187	6555	14538	14954	20034	20034					-0.015962793022254118
STPEDALL	8	Unmodified	_STPEDALL_					0	0	0			REV__tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	REV__tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	845.4250897657001	1	845.42509	844.417813	1.8766	0.0015865	-1.4972	-0.0012658	0.37939	0.00032075	845.4239283876904	28.604	0.048243	28.596	28.572	28.62	-0.0083504	426	34	1.3661768	0.019672632	1.3646574	278.07114	0	4.0041504						39	3	2	NaN	NaN	NaN	0.84455	1	5191	5191		2.7852	0	1	2373.9	+		25188	13530	14539	14955	20035	20035					-0.010618895017501018
STPGECPQ	8	Unmodified	_STPGECPQ_					0	0	0		ENST00000593393.1_1_19:58918335-58918641:-|nuORF	ENST00000593393.1_1_19:58918335-58918641:-|nuORF	ENST00000593393.1_1_19:58918335-58918641:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	818.3348945499	1	818.334895	817.327618	2.1172	0.0017326	3.9297	0.0032158	6.0469	0.0049484	818.3384938779112	25.105	0.12062	25.093	25.045	25.165	-0.012011	513	34	1.3142352	0.019733548	1.3127158	267.6409	0	4.0187073						79	6	2	NaN	NaN	NaN	0.83211	1	4872	4872		4.9097	0	1	5122.6			25189	7746	14540	14956	20036	20036					-0.08835262101831631
STPPPNNL	8	Unmodified	_STPPPNNL_					0	0	0		EHBP1-MDH1|3|fusion;EHBP1-MDH1|4|fusion;EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	EHBP1-MDH1|3|fusion	EHBP1-MDH1|3|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.4257584677001	1	839.425758	838.418482	0.87722	0.00073636	5.2961	0.0044457	6.1734	0.0051821	839.4296625245934	27.277	0.16893	27.267	27.218	27.387	-0.010126	459	52	1.3464937	0.03043878	1.3449743	274.09622	0	6.196228						163	8	3	NaN	NaN	NaN	0.6053	1	5120	5120		24.961	1.6266	1	15492			25190	281	14541	14957	20037	20037					-0.007190500620367857
STPPPNNL	8	Unmodified						0	0	0		EHBP1-MDH1|3|fusion;EHBP1-MDH1|4|fusion;EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	EHBP1-MDH1|3|fusion	EHBP1-MDH1|3|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.425758	838.418482	1.4581	0.0012239	4.3618	0.0036614	5.8199	0.0048854	839.429859880696	27.253	0.19306	27.253	27.205	27.398	0	459	55	1.3464937	0.032231092	1.3464937	274.09622		6.561035	-0.0066285	-0.00045793	0.00075972	NaN	24.961	176	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18245			25191	281	14541	14957							-0.007190500620367857
STRCCGCC	8	Unmodified	_STRCCGCC_					0	0	0		ENSG00000068697|ENST00000175091|LAPTM4A	ENSG00000068697|ENST00000175091|LAPTM4A	ENSG00000068697|ENST00000175091|LAPTM4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.2568606998	1	832.256861	831.249584	0.71014	0.00059102	6.4979	0.0054079	7.2081	0.005999	832.2624588591402	33.309	0.096508	33.307	33.259	33.355	-0.0024757	516	55	1.3124412	0.032292962	1.3109218	267.20154	0	6.574585						134	5	3	NaN	NaN	NaN	0.84876	1	5029	5029		0.39566	0.065779	1	12524			25192	734	14542	14958	20038	20038					-0.17279057554731025
STRMQYNIV	9	Unmodified	_STRMQYNIV_					0	0	0			REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.28186576565	2	556.281866	1110.54918	1.1328	0.00063015	6.4656	0.0035967	7.5984	0.0042268	556.2852578157389	28.556	0.12063	28.547	28.499	28.62	-0.0083504	1236	82	0.876284	0.04969603	0.8747646	355.34082	0	20.152191						220	6	3	NaN	NaN	NaN	0.16171	1	12923	12923		27.789	5.9538	1	49027	+		25193	8758	14543	14959	20039	20039					-0.0016740240553190233
STRMQYNIV	9	Unmodified						0	0	0			REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.281866	1110.54918	1.1328	0.00063015	6.4656	0.0035967	7.5984	0.0042268	556.2852578157389	28.556	0.12063	28.547	28.499	28.62	-0.0083504	1236	82	0.876284	0.04969603	0.8747646	355.34082		20.152191	-0.0045432	-0.00088128	0.00016078	NaN	27.789	220	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49027	+		25194	8758	14543	14959							-0.0016740240553190233
STSSSDPIL	9	Unmodified	_STSSSDPIL_					0	0	0		nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4414681114	1	906.441468	905.434192	1.6599	0.0015046	-0.2491	-0.0002258	1.4108	0.0012788	906.4413777974735	20.814	0.096386	20.814	20.79	20.887	0	438	37	1.359022	0.021466732	1.359022	276.31607	0	4.364624						74	5	2	NaN	NaN	NaN	0.12945	1	6170	6170		31.561	15.144	1	4817.2			25195	1708	14544	14960	20040	20040					-0.022308083356620045
STSSSDPIL	9	Unmodified	_STSSSDPIL_					0	0	0		nc|ENSG00000109062|O14745-2|NHERF1;ENSG00000109062|ENST00000262613|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	nc|ENSG00000109062|O14745-2|NHERF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4414681114	1	906.441468	905.434192	1.9752	0.0017904	-1.1225	-0.0010175	0.8527	0.00077293	906.4410603458923	20.815	0.12035	20.801	20.776	20.897	-0.014088	432	43	1.3625998	0.025041938	1.3610804	277.04352	0	5.091522						77	6	2	NaN	NaN	NaN	0.12328	1	6050	6050		32.453	13.334	1	4677.9			25196	1708	14544	14960	20041	20041					-0.022308083356620045
STTDRCASS	9	Unmodified	_STTDRCASS_					0	0	0			REV__nc|ENSG00000163820|Q9BQS8-4|FYCO1	REV__nc|ENSG00000163820|Q9BQS8-4|FYCO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.19545606155	2	464.195456	926.376359	1.3146	0.00061023	6.1663	0.0028624	7.481	0.0034726	464.19841371554617	30.029	0.31376	30.029	29.86	30.173	0	1365	46	0.7969414	0.027743638	0.7969414	323.95303	0	11.277679						275	14	3	NaN	NaN	NaN	0.46215	1	6513	6513		11.17	2.88	1	32216	+		25197	13158	14545	14961	20042	20042					-0.08977393532734368
STTSPFKQEVF	11	Unmodified	_STTSPFKQEVF_					0	0	0		nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.2153156933333	3	424.215316	1269.62412	1.2519	0.00053107	6.1478	0.002608	7.3997	0.0031391	424.21798233156807	21.272	0.09631	21.272	21.248	21.344	0	1452	46	0.74322224	0.027831018	0.74322224	451.3758	0	16.902405						124	5	3	NaN	NaN	NaN	0.50669	1	18232	18232		13.434	4.4305	1	14002			25198	2751	14546	14962	20043	20043					9.05860672446579E-05
STTTVRKIMN	10	Unmodified	_STTTVRKIMN_					0	0	0		ENSG00000091664|ENST00000263160|SLC17A6	ENSG00000091664|ENST00000263160|SLC17A6	ENSG00000091664|ENST00000263160|SLC17A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.81607272375	2	575.816073	1149.61759	1.3134	0.00075628	-7.5193	-0.0043297	-6.2058	-0.0035734	575.8116373396048	24.285	0.096498	24.285	24.237	24.333	0	1167	58	0.91857195	0.034888268	0.91857195	372.3338	0	14.141602						117	5	4	NaN	NaN	NaN	0.63397	1	14793	14793		12.57	0.52101	1	20458			25199	1082	14547	14963	20044	20044					0.04876842174348894
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.24052387969994	2	439.240524	876.466495	1.0871	0.00047749	-1.5551	-0.00068308	-0.46807	-0.00020559	439.23961470005617	13.228	0.16813	13.228	13.132	13.3	0	1386	34	0.78399014	0.020360768	0.78399014	318.9535	0	8.283447						97	8	2	NaN	NaN	NaN	0.29341	1	5756	5756		19.336	2.7523	1	8828.9			25200	1302	14548	14964	20045	20045					0.023320238579913166
STVGSAISR	9	Unmodified	_STVGSAISR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.24052387969994	2	439.240524	876.466495	1.3814	0.00060677	-0.58161	-0.00025547	0.7998	0.0003513	439.24039293796466	13.182	0.09584	13.172	13.124	13.219	-0.010098	1383	28	0.7858409	0.016655207	0.7843215	319.70645	0	6.775879						55	5	2	NaN	NaN	NaN	0.13999	1	5630	5630		30.035	12.066	1	4277.9			25201	1302	14548	14964	20046	20046					0.023320238579913166
STWLRDFQM	9	Unmodified	_STWLRDFQM_					0	0	0		nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38	nc|nan|Q8TB03-2|CXorf38	nc|nan|Q8TB03-2|CXorf38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.28186576565	2	592.281866	1182.54918	1.8349	0.0010868	-4.5049	-0.0026682	-2.67	-0.0015814	592.7807878316326	26.239	0.16892	26.239	26.215	26.384	0	1194	58	0.902037	0.034922183	0.902037	365.5108	0	14.150696						155	8	3	NaN	NaN	NaN	0.21451	1	15912	15912		24.4	8.9376	1	19672			25202	5435	14549	14965	20047	20047					-0.034794024055372574
STWLRDFQM	9	Unmodified						0	0	0		nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38	nc|nan|Q8TB03-2|CXorf38	nc|nan|Q8TB03-2|CXorf38	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.281866	1182.54918	1.3377	0.00079231	-5.9148	-0.0035033	-4.5771	-0.0027109	592.2777493457127	26.287	0.14474	26.276	26.18	26.324	-0.011137	1191	55	0.90387505	0.03307879	0.9023556	366.25558		13.403717	0.018451	-0.00087857	0.00015929	NaN	24.4	129	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19577			25203	5435	14549	14965							-0.034794024055372574
SVAEIEEAL	9	Unmodified	_SVAEIEEAL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.488418304	1	960.488418	959.481142	1.8082	0.0017367	-1.34	-0.0012871	0.46816	0.00044966	960.4877580170834	25.539	0.14472	25.539	25.491	25.636	0	315	91	1.4322147	0.053404927	1.4322147	290.9519	0	10.849091						287	7	3	NaN	NaN	NaN	0.062072	1	7319	7319		41.785	0	1	24257			25204	4436	14550	14966	20048	20048					-0.00021948784524283838
SVAEIEEAL	9	Unmodified	_SVAEIEEAL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.488418304	1	960.488418	959.481142	2.0207	0.0019409	-0.92909	-0.00089238	1.0917	0.0010485	960.4877877258913	25.539	0.12064	25.528	25.503	25.624	-0.0116	312	82	1.433996	0.048066974	1.4324765	291.31375	0	9.764709						188	6	3	NaN	NaN	NaN	0.032764	1	7173	7173		55.494	5.5323	1	18398			25205	4436	14550	14966	20049	20049					-0.00021948784524283838
SVAEILKY	8	Unmodified	_SVAEILKY_					0	0	0		ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.5244098798001	1	922.52441	921.517133	1.0311	0.00095125	-3.8261	-0.0035297	-2.795	-0.0025784	922.5208018657148	30.993	0.096537	30.988	30.964	31.06	-0.0050716	273	55	1.4571344	0.03201914	1.4556149	296.18686	0	6.508423						113	5	2	NaN	NaN	NaN	0.84562	1	6318	6318		2.1763	0	1	12390			25206	5317	14551	14967	20050	20050					0.053235531830068794
SVAEILKY	8	Unmodified						0	0	0		ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	922.52441	921.517133	1.0607	0.00097851	-4.3647	-0.0040265	-3.304	-0.003048	922.5194959645369	30.994	0.048294	30.994	30.97	31.018	0	279	58	1.4535767	0.03380692	1.4535767	295.46368		6.871826	0.0030628	-0.00030422	-0.0010191	NaN	2.1763	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7446.1			25207	5317	14551	14967							0.053235531830068794
SVAEMVALV	9	Unmodified	_SVAEMVALV_					0	0	0		FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4964805698	1	918.496481	917.489204	1.114	0.0010232	-0.18653	-0.00017133	0.92744	0.00085185	918.4959852705211	27.132	0.096529	27.122	27.074	27.17	-0.010126	336	79	1.419741	0.04635811	1.4182216	288.60464	0	9.423676						166	5	2	NaN	NaN	NaN	0.29681	1	6240	6240		19.118	1.3193	1	27030			25208	5057	14552	14968	20051	20051					0.027159069312574502
SVAEMVALV	9	Unmodified						0	0	0		FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	918.496481	917.489204	1.3998	0.0012858	0.78464	0.00072069	2.1845	0.0020064	918.4975932214098	27.109	0.072388	27.109	27.084	27.157	0	339	79	1.4179583	0.0463531	1.4179583	288.24225		9.422668	-0.0066132	0.00045452	-0.00013164	NaN	19.118	163	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28858			25209	5057	14552	14968							0.027159069312574502
SVAGIFNYY	9	Unmodified	_SVAGIFNYY_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.4989234108	1	1033.49892	1032.49165	1.7584	0.0018173	2.5196	0.002604	4.2779	0.0044212	1034.5050223426997	28.991	0.24136	28.991	28.918	29.16	0	174	106	1.5157272	0.06202531	1.5157272	307.6089	0	12.5877075						766	11	5	NaN	NaN	NaN	0.011206	1	9878	9878		89.256	57.58	1	132130			25210	2803	14553	14969	20052	20052					-0.023299213394238905
SVAGIFNYY	9	Unmodified	_SVAGIFNYY_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.4989234108	1	1033.49892	1032.49165	1.31	0.0013539	3.3683	0.0034811	4.6783	0.004835	1034.5059998687268	28.99	0.31376	28.982	28.91	29.224	-0.0077229	174	85	1.5157272	0.049622893	1.5142077	307.6089	0	10.070679						649	14	4	NaN	NaN	NaN	0.089764	1	9670	9670		37.302	12.902	1	125990			25211	2803	14553	14969	20053	20053					-0.023299213394238905
SVAIVPIQS	9	Unmodified	_SVAIVPIQS_					0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.27129269184996	2	457.271293	912.528032	1.0177	0.00046536	-0.87729	-0.00040116	0.14041	6.4203E-05	457.2707134240488	26.674	0.09655	26.674	26.65	26.746	0	1353	73	0.8043377	0.044377804	0.8043377	327.0321	0	18.043396						173	5	3	NaN	NaN	NaN	0.18779	1	6285	6285		26.115	0	1	29110	+		25212	9924	14554	14970	20054	20054					0.06826955557278325
SVAIVPIQS	9	Unmodified						0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.271293	912.528032	1.0177	0.00046536	-0.87729	-0.00040116	0.14041	6.4203E-05	457.2707134240488	26.674	0.09655	26.674	26.65	26.746	0	1353	73	0.8043377	0.044377804	0.8043377	327.0321		18.043396	-0.0065704	0.00043685	-0.00016457	NaN	26.115	173	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29110	+		25213	9924	14554	14970							0.06826955557278325
SVAKSSGS	8	Unmodified	_SVAKSSGS_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3679092378002	1	722.367909	721.360633	1.1269	0.00081404	5.4469	0.0039347	6.5738	0.0047487	722.3717622858846	29.328	0.28953	29.32	29.248	29.537	-0.0077209	600	94	1.2621325	0.05582106	1.2606131	257.5948	0	11.392792						435	13	4	NaN	NaN	NaN	0.84727	1	3541	3541		1.2418	0	1	73781	+		25214	10578	14555	14971	20055	20055					-0.01119311987463334
SVALATSK	8	Unmodified	_SVALATSK_					0	0	0		nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;ENST00000483772.1_1_13:52538956-52548098:-|nuORF	nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-2|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	776.4512449367	1	776.451245	775.443968	1.4587	0.0011326	4.9912	0.0038754	6.4499	0.005008	776.4546753646903	32.683	0.16891	32.683	32.635	32.804	0	531	58	1.3034686	0.034103394	1.3034686	265.68515	0	6.9512634						217	8	3	NaN	NaN	NaN	0.80071	1	4437	4437		9.1232	0	1	32886			25215	2365	14556	14972	20056	20056					0.04726424460375256
SVALPAIMR	9	Unmodified	_SVALPAIMR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.28113748415007	2	479.281137	956.547722	1.9771	0.00094759	-3.1944	-0.001531	-1.2173	-0.00058341	479.2799429624085	23.224	0.14468	23.224	23.128	23.272	0	1344	49	0.8098828	0.02956599	0.8098828	329.0619	0	12.012878						202	7	4	NaN	NaN	NaN	0.16171	1	7259	7259		27.789	12.613	1	23281			25216	3067	14557	14973	20057	20057					0.0677100829640267
SVALPAIMR	9	Unmodified	_SVALPAIMR_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.28113748415007	2	479.281137	956.547722	1.8436	0.0008836	-4.0075	-0.0019207	-2.1639	-0.0010371	479.2796924284679	23.223	0.16888	23.21	23.162	23.331	-0.013294	1344	46	0.8098828	0.027716637	0.8083634	329.06192	0	11.261475						198	8	4	NaN	NaN	NaN	0.14301	1	7120	7120		29.598	11.799	1	21322			25217	3067	14557	14973	20058	20058					0.0677100829640267
SVAQGWVR	8	Unmodified	_SVAQGWVR_					0	0	0		MYOZ3|p.R236S|1|0.31|ENSG00000164591|chr5:150676827-150676827|A/T|missense_variant	MYOZ3|p.R236S|1|0.31|ENSG00000164591|chr5:150676827-150676827|A/T|missense_variant	MYOZ3|p.R236S|1|0.31|ENSG00000164591|chr5:150676827-150676827|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	451.74577643310005	2	451.745776	901.477	0.89201	0.00040296	-1.8577	-0.00083922	-0.96572	-0.00043626	451.74495019845	21.055	0.16857	21.055	21.007	21.175	0	1542	109	0.6874725	0.066928744	0.6874725	279.56723	0	27.217194						268	8	2	NaN	NaN	NaN	0.80692	1	6105	6105		8.2903	0	1	33460			25218	7891	14558	14974	20059	20059					0.022320513030990696
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	453.2687500029	2	453.26875	904.522947	1.3754	0.00062343	-3.2478	-0.0014721	-1.8724	-0.00084869	453.2671167416283	17.573	0.095848	17.573	17.549	17.645	0	1377	40	0.7895419	0.024054885	0.7895419	321.0585	0	9.781647						66	5	2	NaN	NaN	NaN	0.34188	1	6165	6165		16.226	3.6561	1	8442.1			25219	6406	14559	14975	20060	20060					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	453.2687500029	2	453.26875	904.522947	1.5897	0.00072055	-1.2907	-0.00058504	0.29896	0.00013551	453.26815016542116	17.594	0.11991	17.58	17.532	17.652	-0.013567	1377	37	0.7895419	0.022203326	0.78802246	321.05847	0	9.028748						109	6	3	NaN	NaN	NaN	0.3106	1	6042	6042		18.233	2.7708	1	9824.1			25220	6406	14559	14975	20061	20061					0.06686651694667489
SVASPNIAVF	10	Unmodified	_SVASPNIAVF_					0	0	0			REV__ENST00000508532.5_1_3:130613552-130649285:+|nuORF	REV__ENST00000508532.5_1_3:130613552-130649285:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5411225765001	1	1004.54112	1003.53385	0.020516	2.0609E-05	4.9021	0.0049243	4.9226	0.0049449	1004.5459384820799	48.113	0.31167	48.12	48.024	48.335	0.0061035	210	115	1.4944444	0.06742394	1.4929249	303.405	0	13.688538						829	14	3	NaN	NaN	NaN	0.5358	1	8563	8563		17.97	0	1	141400	+		25221	12534	14560	14976	20062	20062					0.03222054068953639
SVASTPISQR	10	Unmodified	_SVASTPISQR_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2854626996001	2	523.285463	1044.55637	1.7757	0.0009292	-2.0293	-0.0010619	-0.25359	-0.0001327	523.2842756168837	13.997	0.16806	13.997	13.949	14.117	0	1281	40	0.84864825	0.023969114	0.84864825	344.4007	0	9.727234						123	8	3	NaN	NaN	NaN	0.2504	1	10414	10414		31.198	9.363	1	14561			25222	128	14561	14977	20063	20063					0.03587653466570373
SVASTPISQR	10	Unmodified	_SVASTPISQR_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2854626996001	2	523.285463	1044.55637	1.3563	0.00070975	-1.8618	-0.00097427	-0.50551	-0.00026452	523.2847394729146	13.997	0.14392	13.986	13.938	14.082	-0.010672	1281	37	0.84864825	0.022126555	0.8471288	344.4007	0	8.979462						129	7	3	NaN	NaN	NaN	0.14791	1	10200	10200		40.006	7.5531	1	16413			25223	128	14561	14977	20064	20064					0.03587653466570373
SVAVSTKT	8	Unmodified	_SVAVSTKT_					0	0	0		ENST00000319888.10_1_18:2571357-2571456:-|nuORF	ENST00000319888.10_1_18:2571357-2571456:-|nuORF	ENST00000319888.10_1_18:2571357-2571456:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	792.4461595588001	1	792.44616	791.438883	1.3317	0.0010553	4.0756	0.0032297	5.4073	0.004285	792.4496576571161	29.979	0.12068	29.973	29.949	30.07	-0.0064087	498	49	1.3232021	0.028686523	1.3216827	269.61264	0	5.845093						98	6	2	NaN	NaN	NaN	0.8439	1	4552	4552		3.1533	0	1	11455			25224	6478	14562	14978	20065	20065					0.03482120597766425
SVCHGAPG	8	Unmodified	_SVCHGAPG_					0	0	0		ENST00000462605.5_1_7:150725553-150729984:+|nuORF	ENST00000462605.5_1_7:150725553-150729984:+|nuORF	ENST00000462605.5_1_7:150725553-150729984:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3191849062001	1	727.319185	726.311908	1.4772	0.0010744	5.2533	0.0038208	6.7304	0.0048952	727.3233290678156	55.893	0.072067	55.893	55.869	55.941	0	561	94	1.2855089	0.05567217	1.2855089	262.33243	0	11.360931						112	4	2	NaN	NaN	NaN	0.84207	1	3703	3703		3.5732	0	1	7192.5			25225	7085	14563	14979	20066	20066					-0.06219503828208417
SVDEVEISV	9	Unmodified	_SVDEVEISV_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1;ENST00000556963.5_1_14:77924568-77929110:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4833329261	1	976.483333	975.476056	1.5988	0.0015612	-1.9719	-0.0019255	-0.37311	-0.00036434	976.4815532520366	24.502	0.14465	24.502	24.454	24.598	0	303	97	1.4393384	0.056947112	1.4393384	292.33118	0	11.56604						288	7	3	NaN	NaN	NaN	0.12328	1	7757	7757		32.453	2.8544	1	37998			25226	1259	14564	14980	20067	20067					-0.012662526471331148
SVDGAIALL	9	Unmodified	_SVDGAIALL_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4931097514001	1	858.49311	857.485833	1.5548	0.0013348	0.43019	0.00036931	1.985	0.0017041	858.4935500570881	24.526	0.096426	24.526	24.478	24.574	0	420	58	1.3697531	0.03397274	1.3697531	278.73096	0	6.9131165						131	5	3	NaN	NaN	NaN	0.12945	1	5507	5507		31.561	1.9627	1	16350	+		25227	11331	14565	14981	20068	20068					0.05138980148910832
SVDPLDRAM	9	Unmodified	_SVDPLDRAM_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.24749163205	2	502.247492	1002.48043	1.4236	0.00071502	-3.277	-0.0016459	-1.8534	-0.00093084	502.24514369768553	19.9	0.12032	19.885	19.837	19.958	-0.014141	1305	40	0.83389086	0.023989916	0.8323714	338.59653	0	9.740967						101	6	3	NaN	NaN	NaN	0.25548	1	8512	8512		21.771	5.3544	1	10331		+	25228	3621	14566	14982	20069	20069					-0.020710667052185272
SVDPVLSIL	9	Unmodified	_SVDPVLSIL_					0	0	0		ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.5506246303001	1	942.550625	941.543348	0.77965	0.00073486	0.82865	0.00078105	1.6083	0.0015159	942.5512403441958	33.335	0.096539	33.335	33.287	33.383	0	288	67	1.4482387	0.039142847	1.4482387	294.28647	0	7.953949						134	5	2	NaN	NaN	NaN	0.04947	1	6856	6856		47.136	12.697	1	14078			25229	5732	14567	14983	20070	20070					0.070238223544834
SVDPVLSIL	9	Unmodified	_SVDPVLSIL_					0	0	0		ENST00000495407.1_1_10:121602688-121616909:-|nuORF;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENST00000495407.1_1_10:121602688-121616909:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.5506246303001	1	942.550625	941.543348	1.1142	0.0010502	-0.012375	-1.1664E-05	1.1019	0.0010386	942.5498200996611	33.334	0.096508	33.331	33.283	33.379	-0.0024757	282	64	1.4517976	0.03736162	1.4502782	295.00964	0	7.59198						131	5	3	NaN	NaN	NaN	0.023074	1	6718	6718		68.108	15.35	1	10581			25230	5732	14567	14983	20071	20071					0.070238223544834
SVDWPESSL	9	Unmodified	_SVDWPESSL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.4680172129	1	1019.46802	1018.46074	2.9185	0.0029753	-1.1059	-0.0011275	1.8125	0.0018478	1019.4668854044827	25.926	0.16892	25.926	25.877	26.046	0	246	70	1.4731345	0.04087639	1.4731345	299.01926	0	8.29715						230	8	2	NaN	NaN	NaN	0.12328	1	9303	9303		32.453	14.483	1	22259			25231	2346	14568	14984	20072	20072					-0.047751194443321765
SVDWPESSL	9	Unmodified	_SVDWPESSL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.4680172129	1	1019.46802	1018.46074	2.4907	0.0025391	-0.73386	-0.00074815	1.7568	0.001791	1019.4669614040267	25.925	0.19309	25.914	25.865	26.059	-0.0116	240	64	1.4766881	0.03731799	1.4751687	299.74057	0	7.5748596						270	9	3	NaN	NaN	NaN	0.055351	1	9118	9118		44.638	14.028	1	22118			25232	2346	14568	14984	20073	20073					-0.047751194443321765
SVEAVDPVF	9	Unmodified	_SVEAVDPVF_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4829389956001	1	962.482939	961.475663	1.9591	0.0018856	-2.7647	-0.002661	-0.80559	-0.00077537	962.4801101488473	26.239	0.12067	26.239	26.191	26.312	0	309	82	1.435777	0.048051715	1.435777	291.667	0	9.761322						168	6	2	NaN	NaN	NaN	0.13602	1	7363	7363		30.61	10.161	1	20144			25233	2002	14569	14985	20074	20074					-0.006616275763235535
SVEAVDPVF	9	Unmodified	_SVEAVDPVF_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4829389956001	1	962.482939	961.475663	1.8131	0.0017451	-2.8925	-0.002784	-1.0794	-0.0010389	962.480802469265	26.239	0.096506	26.228	26.18	26.276	-0.011137	309	85	1.435777	0.049834013	1.4342575	291.667	0	10.123413						171	5	2	NaN	NaN	NaN	0.04947	1	7217	7217		47.136	12.697	1	20469			25234	2002	14569	14985	20075	20075					-0.006616275763235535
SVFIDWVL	8	Unmodified	_SVFIDWVL_					0	0	0		ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5294952577	1	978.529495	977.522219	1.4054	0.0013752	-1.0891	-0.0010657	0.31627	0.00030948	978.5282808806373	37.072	0.12048	37.072	37.024	37.145	0	234	52	1.4802408	0.030193806	1.4802408	300.62976	0	6.132202						116	6	2	NaN	NaN	NaN	0.30832	1	7823	7823		41.46	14.729	1	10626			25235	3473	14570	14986	20076	20076					0.032558570455989866
SVFIDWVL	8	Unmodified						0	0	0		ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	978.529495	977.522219	1.5604	0.0015269	0.64056	0.00062681	2.201	0.0021537	978.5292703295854	37.07	0.12045	37.072	37.048	37.169	0.0022469	231	49	1.4820169	0.028416157	1.4804975	300.99045		5.771179	-5.7301E-05	0.0010429	0.00012833	NaN	41.46	107	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8187.1			25236	3473	14570	14986							0.032558570455989866
SVGAAGWG	8	Unmodified	_SVGAAGWG_					0	0	0		ENST00000240306.4_2_17:48046671-48046833:+|nuORF	ENST00000240306.4_2_17:48046671-48046833:+|nuORF	ENST00000240306.4_2_17:48046671-48046833:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3362151789001	1	704.336215	703.328939	1.6315	0.0011491	6.6177	0.0046611	8.2492	0.0058102	704.3411589931557	24.719	0.048222	24.707	24.658	24.707	-0.012392	594	37	1.265731	0.021588564	1.2642115	258.45264	0	4.408203						43	3	2	NaN	NaN	NaN	0.84651	1	3213	3213		1.6704	0	1	3155.4			25237	6259	14571	14987	20077	20077					-0.03459259950750493
SVGAIPIPT	9	Unmodified	_SVGAIPIPT_					0	0	0		ENST00000488381.5_1_12:6764908-6765034:-|nuORF	ENST00000488381.5_1_12:6764908-6765034:-|nuORF	ENST00000488381.5_1_12:6764908-6765034:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.4981951293001	1	854.498195	853.490919	1.4725	0.0012583	-0.08729	-7.4589E-05	1.3852	0.0011837	854.4976180795053	26.915	0.096512	26.915	26.867	26.964	0	399	58	1.382264	0.03394735	1.382264	281.2976	0	6.908478						127	5	3	NaN	NaN	NaN	0.20577	1	5441	5441		24.961	4.4056	1	14763			25238	7249	14572	14988	20078	20078					0.0583128401152635
SVGAVPGI	8	Unmodified	_SVGAVPGI_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.4035664626002	1	699.403566	698.39629	1.8512	0.0012947	2.9626	0.002072	4.8138	0.0033668	699.4056412103599	18.17	0.072039	18.156	18.132	18.204	-0.01395	645	49	1.2351195	0.028840065	1.2336	252.23602	0	5.8897247						79	4	2	NaN	NaN	NaN	0.84692	1	3133	3133		1.4396	0	1	6878.9			25239	2624	14573	14989	20079	20079					0.03502770260206489
SVGAVPGI	8	Unmodified						0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	699.403566	698.39629	1.6851	0.0011786	3.9531	0.0027648	5.6382	0.0039434	699.4066187311596	18.125	0.072006	18.125	18.101	18.173	0	648	43	1.2333171	0.025232434	1.2333171	251.86794		5.152954	-0.015519	0.00032075	-0.00014149	NaN	1.4396	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5988.7			25240	2624	14573	14989							0.03502770260206489
SVGEITGHNK	10	Unmodified	_SVGEITGHNK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2698126354001	2	521.269813	1040.52507	1.6898	0.00088087	-0.67011	-0.00034931	1.0197	0.00053156	521.7714702469974	11.454	0.096009	11.446	11.398	11.494	-0.0075302	1272	37	0.854179	0.022117019	0.8526596	346.66266	0	8.976044						73	5	2	NaN	NaN	NaN	0.15916	1	10015	10015		39.039	14.639	1	5649.9			25241	774	14574	14990	20080	20080					0.006430804324736528
SVGEITGHNK	10	Unmodified						0	0	0		ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.269813	1040.52507	2.203	0.0011484	0.62967	0.00032823	2.8327	0.0014766	521.2709922465316	11.644	0.047921	11.644	11.62	11.668	0	1272	37	0.854179	0.022114575	0.854179	346.66266		8.975067	0.098797	0.00090695	0.00075972	NaN	39.039	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2456			25242	774	14574	14990							0.006430804324736528
SVGFLALG	8	Unmodified	_SVGFLALG_					0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.434866591	1	763.434867	762.42759	1.5797	0.001206	-2.5142	-0.0019194	-0.93447	-0.0007134	763.4329518122306	28.822	0.21721	28.822	28.725	28.943	0	603	64	1.2603331	0.037798047	1.2603331	256.96915	0	7.7066345						195	10	2	NaN	NaN	NaN	0.84692	1	4249	4249		1.4396	0	1	33665	+		25243	10597	14575	14991	20081	20081					0.0368734329426843
SVGFLALG	8	Unmodified						0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	763.434867	762.42759	1.5797	0.001206	-2.5142	-0.0019194	-0.93447	-0.0007134	763.4329518122306	28.822	0.21721	28.822	28.725	28.943	0	603	64	1.2603331	0.037798047	1.2603331	256.96915		7.7066345	0.0045493	0.00038063	0.00075972	NaN	1.4396	195	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33665	+		25244	10597	14575	14991							0.0368734329426843
SVGGSVGS	8	Unmodified	_SVGGSVGS_					0	0	0		ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	325.16121092620006	2	325.161211	648.307869	1.9594	0.00063711	3.9487	0.001284	5.9081	0.0019211	325.1624857441952	33.189	0.072411	33.186	33.162	33.235	-0.0024796	1518	31	0.7023569	0.018599331	0.70083743	287.28714	0	7.6077576						46	4	2	NaN	NaN	NaN	0.84887	1	1922	1922		0.32989	0	1	3034.7			25245	6672	14576	14992	20082	20082					-0.030352700502703556
SVGPRDPSF	9	Unmodified	_SVGPRDPSF_					0	0	0		nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.2405238797	2	481.240524	960.466495	2.3148	0.001114	-5.0538	-0.0024321	-2.739	-0.0013181	481.2406286910719	16.826	0.11977	16.813	16.765	16.885	-0.013294	1365	34	0.7969414	0.02034533	0.79542196	323.785	0	8.265991						96	6	2	NaN	NaN	NaN	0.40649	1	7195	7195		13.463	3.7171	1	8452.6			25246	4150	14577	14993	20083	20083					-0.015319761420073519
SVHGNASA	8	Unmodified	_SVHGNASA_					0	0	0			REV__ENST00000187830.2_1_19:45147391-45165075:+|nuORF	REV__ENST00000187830.2_1_19:45147391-45165075:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3478424977001	1	742.347842	741.340566	1.5035	0.0011161	4.3249	0.0032106	5.8284	0.0043267	742.3512846998101	22.621	0.19298	22.607	22.559	22.752	-0.01354	609	67	1.2567334	0.039604306	1.255214	256.36395	0	8.0789795						237	9	4	NaN	NaN	NaN	0.80191	1	3854	3854		8.962	0.67169	1	31598	+		25247	8591	14578	14994	20084	20084					-0.0404506292742326
SVHQSFRPT	9	Unmodified	_SVHQSFRPT_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-7|MADD	REV__nc|ENSG00000110514|Q8WXG6-7|MADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5377685331	1	1058.53777	1057.53049	1.465	0.0015507	1.4728	0.001559	2.9378	0.0031097	1058.5402912099153	34.059	0.072388	34.059	33.986	34.059	0	174	169	1.5157272	0.099151134	1.5157272	307.51288	0	20.115906						301	4	3	NaN	NaN	NaN	0.31737	1	10987	10987		17.799	2.7861	1	58337	+		25248	9078	14579	14995	20085	20085					0.004028040149478329
SVHQSFRPT	9	Unmodified						0	0	0			REV__nc|ENSG00000110514|Q8WXG6-7|MADD	REV__nc|ENSG00000110514|Q8WXG6-7|MADD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1058.53777	1057.53049	1.465	0.0015507	1.4728	0.001559	2.9378	0.0031097	1058.5402912099153	34.059	0.072388	34.059	33.986	34.059	0	174	169	1.5157272	0.099151134	1.5157272	307.51288		20.115906	0	0	0	NaN	17.799	301	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58337	+		25249	9078	14579	14995							0.004028040149478329
SVHTATAVPS	10	Unmodified	_SVHTATAVPS_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.25363125495	2	485.253631	968.49271	1.523	0.00073905	-8.4854	-0.0041176	-6.9624	-0.0033785	485.24927624998475	29.062	0.14478	29.055	29.007	29.151	-0.0077209	1344	67	0.8098828	0.040679634	0.8083634	329.00443	0	16.525604						97	7	2	NaN	NaN	NaN	0.73444	1	7417	7417		5.6942	0.50528	1	8310.8			25250	1349	14580	14996	20086	20086					0.007202930294738508
SVHTATAVPS	10	Unmodified						0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	485.253631	968.49271	1.587	0.00077012	-8.5024	-0.0041258	-6.9154	-0.0033557	485.2489586559568	29.063	0.12066	29.063	29.015	29.136	0	1347	58	0.8080346	0.0351305	0.8080346	328.25363		14.271301	0.0042687	-6.9602E-06	-0.00016437	NaN	5.6942	120	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8511.1			25251	1349	14580	14996							0.007202930294738508
SVIDGVTVL	9	Unmodified	_SVIDGVTVL_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5193245018999	1	902.519325	901.512048	1.8947	0.00171	-1.4375	-0.0012974	0.45721	0.00041265	902.519466829369	28.412	0.096512	28.412	28.363	28.46	0	327	79	1.425088	0.046348214	1.425088	289.7675	0	9.424133						194	5	3	NaN	NaN	NaN	0.043119	1	6112	6112		49.833	5.5305	1	29382			25252	427	14581	14997	20087	20087					0.05735249320355251
SVIDGVTVL	9	Unmodified	_SVIDGVTVL_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.5193245018999	1	902.519325	901.512048	1.4679	0.0013248	-0.19633	-0.00017719	1.2715	0.0011476	902.5194930790797	28.411	0.09655	28.402	28.378	28.474	-0.0089798	324	70	1.42687	0.040980697	1.4253505	290.12982	0	8.332733						148	5	2	NaN	NaN	NaN	0.043119	1	5991	5991		49.833	13.246	1	32404			25253	427	14581	14997	20088	20088					0.05735249320355251
SVIHHRRR	8	Unmodified	_SVIHHRRR_					0	0	0			REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.8153903675501	2	530.81539	1059.61623	1.6968	0.00090067	1.0466	0.00055554	2.7434	0.0014562	530.815562637954	20.165	0.072071	20.165	20.141	20.213	0	1233	46	0.87812483	0.027617872	0.87812483	356.29706	0	11.205902						75	4	2	NaN	NaN	NaN	0.84887	1	11088	11088		0.32989	0	1	9666.1	+		25254	9044	14582	14998	20089	20089					0.0888043371112417
SVIHHRRR	8	Unmodified						0	0	0			REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.81539	1059.61623	1.6968	0.00090067	1.0466	0.00055554	2.7434	0.0014562	530.815562637954	20.165	0.072071	20.165	20.141	20.213	0	1233	46	0.87812483	0.027617872	0.87812483	356.29706		11.205902	-0.064969	4.225E-05	-0.00016058	NaN	0.32989	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9666.1	+		25255	9044	14582	14998							0.0888043371112417
SVIHHRRR	8	Unmodified						0	0	0			REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	REV__ENST00000585550.5_1_17:40855746-40872302:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.81539	1059.61623	1.1017	0.0005848	0.98591	0.00052334	2.0876	0.0011081	530.815579637044	20.309	0.12025	20.295	20.222	20.343	-0.014141	1230	46	0.8799654	0.027611852	0.878446	357.04385		11.203461	0.064969	-2.2159E-05	0.00016058	NaN	0.32989	102	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10732	+		25256	9044	14582	14998							0.0888043371112417
SVINLDPEI	9	Unmodified	_SVINLDPEI_					0	0	0		BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant;nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.5357028476	1	999.535703	998.528426	1.3366	0.001336	-0.68439	-0.00068407	0.65221	0.0006519	999.5361838985782	28.435	0.048283	28.426	28.402	28.45	-0.0089798	234	91	1.4802408	0.053302884	1.4787214	300.5418	0	10.822388						136	3	2	NaN	NaN	NaN	0.015447	1	8345	8345		77.761	34.766	1	17421			25257	65	14583	14999	20090	20090					0.029103304864634083
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3061981417001	2	545.306198	1088.59784	1.4139	0.00077102	-2.2613	-0.0012331	-0.84736	-0.00046207	545.3047788545083	20.189	0.09613	20.189	20.141	20.237	0	1263	43	0.85970795	0.025800347	0.85970795	348.7053	0	10.464874						106	5	3	NaN	NaN	NaN	0.68732	1	12343	12343		8.9191	4.0094	1	11996			25258	2001	14584	15000	20091	20091					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENSG00000115232|ENST00000397033|ITGA4	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	ENST00000484404.1_1_2:182322441-182339919:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.3061981417001	2	545.306198	1088.59784	1.511	0.00082396	-1.9816	-0.0010806	-0.47054	-0.00025659	545.3053568542053	20.213	0.096239	20.198	20.15	20.246	-0.014141	1266	43	0.85786515	0.025797546	0.8563457	347.95782	0	10.463745						131	5	3	NaN	NaN	NaN	0.41164	1	12035	12035		23.118	11.069	1	14576			25259	2001	14584	15000	20092	20092					0.057088342259021374
SVISDDSVL	9	Unmodified	_SVISDDSVL_					0	0	0		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4727682398001	1	934.472768	933.465492	1.5301	0.0014299	4.9944	0.0046671	6.5245	0.006097	934.4776855237366	24.478	0.19307	24.465	24.393	24.586	-0.012747	321	82	1.4286518	0.04811299	1.4271324	290.34253	0	9.777924						318	9	3	NaN	NaN	NaN	0.025843	1	6540	6540		64.55	9.0563	1	50345			25260	822	14585	15001	20093	20093					-0.003902353015632798
SVISDDSVL	9	Unmodified						0	0	0		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.472768	933.465492	1.4873	0.0013898	-0.045296	-4.2328E-05	1.442	0.0013475	934.4771793789645	24.478	0.21705	24.478	24.406	24.623	0	330	106	1.4233059	0.062375307	1.4233059	289.2561		12.676422	0.0064687	-0.0022609	-0.0019132	NaN	64.55	454	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70718			25261	822	14585	15001							-0.003902353015632798
SVKEISDIVQR	11	Unmodified	_SVKEISDIVQR_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3591589589499	2	637.359159	1272.70376	2.2428	0.0014295	-1.8525	-0.0011807	0.39027	0.00024874	637.3583167985657	17.618	0.09589	17.604	17.556	17.652	-0.013786	1089	34	0.96624947	0.020144105	0.96473	391.21005	0	8.155853						70	5	2	NaN	NaN	NaN	0.58357	1	17466	17466		23.591	16.973	1	7041			25262	1146	14586	15002	20094	20094					0.07832125280674518
SVKEISDIVQR	11	Unmodified						0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.359159	1272.70376	2.0813	0.0013266	1.6769	0.0010688	3.7582	0.0023953	637.3602354242533	17.549	0.047895	17.549	17.525	17.573	0	1092	31	0.9644182	0.018313825	0.9644182	390.46863		7.414795	-0.02749	0.0013745	-0.00015592	NaN	23.591	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5200			25263	1146	14586	15002							0.07832125280674518
SVKLTYLKTQY	11	Unmodified	_SVKLTYLKTQY_					0	0	0		nc|ENSG807|P61550|ERVS71-1	nc|ENSG807|P61550|ERVS71-1	nc|ENSG807|P61550|ERVS71-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3821027390001	2	672.382103	1342.74965	0.62846	0.00042256	-6.9556	-0.0046768	-6.3271	-0.0042542	672.3776285357696	40.2	0.16835	40.2	40.08	40.248	0	1185	46	0.90755045	0.027558208	0.90755045	367.2385	0	11.151367						184	8	4	NaN	NaN	NaN	0.77466	1	19462	19462		1.1768	0	1	14953			25264	8067	14587	15003	20095	20095					0.09198770462944594
SVLDLVVAL	9	Unmodified	_SVLDLVVAL_					0	0	0		ENST00000479481.5_1_10:99131673-99132940:-|nuORF;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12	ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENST00000479481.5_1_10:99131673-99132940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.5713600723999	1	928.57136	927.564084	0.86797	0.00080597	-0.10449	-9.7025E-05	0.76348	0.00070894	928.5717587369975	37.046	0.14449	37.048	37.024	37.169	0.0022507	225	46	1.4855686	0.026635766	1.4840492	301.9376	0	5.413666						105	7	2	NaN	NaN	NaN	0.094712	1	6419	6419		36.586	5.0254	1	8451.1			25265	580	14588	15004	20096	20096					0.09740412734117854
SVLETVEVL	9	Unmodified	_SVLETVEVL_					0	0	0		nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-3|UMPS	nc|ENSG00000114491|P11172-3|UMPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5561039387	1	988.556104	987.548827	1.8027	0.0017821	-4.6607	-0.0046074	-2.8581	-0.0028253	988.5510449093572	29.305	0.048286	29.305	29.28	29.329	0	204	82	1.4979934	0.047919154	1.4979934	304.1923	0	9.730774						92	3	2	NaN	NaN	NaN	0.056143	1	8139	8139		44.302	0	1	19804			25266	1961	14589	15005	20097	20097					0.0545550114627531
SVLETVEVL	9	Unmodified	_SVLETVEVL_					0	0	0		nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-3|UMPS	nc|ENSG00000114491|P11172-3|UMPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5561039387	1	988.556104	987.548827	1.3948	0.0013789	-2.9039	-0.0028707	-1.5091	-0.0014918	988.5537797259414	29.304	0.024139	29.296	29.272	29.296	-0.0077229	204	58	1.4979934	0.03371024	1.496474	304.19226	0	6.845398						91	2	3	NaN	NaN	NaN	0.062072	1	7975	7975		41.785	5.198	1	16484			25267	1961	14589	15005	20098	20098					0.0545550114627531
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.25511131139996	2	433.255111	864.49567	1.3372	0.00057933	-2.7222	-0.0011794	-1.385	-0.00060006	433.2543839619862	36.663	0.024059	36.663	36.639	36.663	0	1407	31	0.77102906	0.018522859	0.77102906	313.74747	0	7.537323						34	2	2	NaN	NaN	NaN	0.84692	1	5591	5591		1.4396	0	1	2660.9			25268	7989	14590	15006	20099	20099					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562	1	865.502946	864.49567	0.98621	0.00085357	-1.7944	-0.0015531	-0.8082	-0.0006995	865.5014609548738	33.721	0.12063	33.721	33.697	33.817	0	477	52	1.3357477	0.030451775	1.3357477	271.77646	0	6.195862						175	6	3	NaN	NaN	NaN	0.8439	1	5593	5593		3.1533	0	1	18367			25269	7989	14590	15006	20100	20100					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.25511131139996	2	433.255111	864.49567	1.3316	0.00057691	-1.5639	-0.00067759	-0.23237	-0.00010067	433.2548824730303	35.603	0.45803	35.603	35.554	36.012	0	1398	124	0.77658504	0.07600552	0.77658504	316.00827	0	30.928192						1123	20	5	NaN	NaN	NaN	0.82332	1	5595	5595		6.0903	0	1	987220			25270	7989	14590	15006	20101	20101					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.25511131139996	2	433.255111	864.49567	0.6337	0.00027455	-1.863	-0.00080715	-1.2293	-0.0005326	433.2544262551774	37.263	0.12049	37.265	37.217	37.337	0.0022469	1404	34	0.77288127	0.02037406	0.7713618	314.50113	0	8.290619						112	6	3	NaN	NaN	NaN	0.84692	1	5454	5454		1.4396	0	1	16468			25271	7989	14590	15006	20102	20102					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.25511131139996	2	433.255111	864.49567	1.2353	0.00053521	-2.0018	-0.00086731	-0.76651	-0.00033209	433.2545423668525	35.601	0.40974	35.602	35.553	35.963	0.00053024	1395	133	0.7784366	0.08158016	0.77691716	316.76172	0	33.196625						1229	18	5	NaN	NaN	NaN	0.82332	1	5456	5456		6.0903	0	1	966860			25272	7989	14590	15006	20103	20103					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562	1	865.502946	864.49567	0.60587	0.00052439	-0.61603	-0.00053317	-0.010152	-8.7866E-06	865.5025479861079	33.72	0.096558	33.718	33.694	33.79	-0.0018463	474	52	1.3375392	0.030451775	1.3360198	272.14093	0	6.195862						116	5	2	NaN	NaN	NaN	0.8439	1	5459	5459		3.1533	0	1	15338			25273	7989	14590	15006	20104	20104					0.058001681542691585
SVLILASY	8	Unmodified						0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	433.255111	864.49567	0.82427	0.00035712	-3.0003	-0.0012999	-2.176	-0.00094276	433.25444879462833	37.046	0.14434	37.048	36.976	37.121	0.0022507	1404	37	0.77288127	0.022227407	0.7713618	314.50116		9.044769	0.19243	-8.796E-05	0.00016637	NaN	1.4396	115	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11258			25274	7989	14590	15006							0.058001681542691585
SVLKDCAVI	9	Unmodified	_SVLKDCAVI_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;ENST00000514623.1_1_3:123428573-123453020:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	474.2651530689499	2	474.265153	946.515753	1.6029	0.00076022	-5.4886	-0.0026031	-3.8857	-0.0018428	474.2624955706519	21.922	0.24104	21.922	21.85	22.091	0	1359	52	0.8006399	0.031425714	0.8006399	325.35532	0	12.770447						248	11	4	NaN	NaN	NaN	0.14787	1	7001	7001		28.896	2.164	1	46188			25275	688	14591	15007	20105	20105					0.04035595822574578
SVMLELVAL	9	Unmodified	_SVMLELVAL_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5590808266	1	974.559081	973.551804	1.9903	0.0019397	-0.56756	-0.00055312	1.4227	0.0013865	974.5589314687612	34.734	0.28944	34.734	34.662	34.951	0	204	178	1.4979934	0.10482371	1.4979934	304.25244	0	21.290375						970	13	5	NaN	NaN	NaN	0.030391	1	7712	7712		58.599	11.559	1	243780			25276	2598	14592	15008	20106	20106					0.06397052999443531
SVMLELVAL	9	Unmodified	_SVMLELVAL_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;nc|ENSG00000129255|O75352-2|MPDU1;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5590808266	1	974.559081	973.551804	1.8428	0.0017959	-0.62361	-0.00060774	1.2192	0.0011881	974.5589126351548	34.733	0.241	34.732	34.636	34.877	-0.0006485	201	148	1.4997677	0.08701992	1.4982482	304.61282	0	17.674316						907	11	5	NaN	NaN	NaN	0.014046	1	7565	7565		80.639	10.039	1	244030			25277	2598	14592	15008	20107	20107					0.06397052999443531
SVNDGEPVL	9	Unmodified	_SVNDGEPVL_					0	0	0		nc|ENSG00000214357|A8MQ27-3|NEURL1B;ENSG00000214357|ENST00000369800|NEURL1B	nc|ENSG00000214357|A8MQ27-3|NEURL1B	nc|ENSG00000214357|A8MQ27-3|NEURL1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4574525265999	1	929.457453	928.450176	1.7726	0.0016476	4.4006	0.0040902	6.1732	0.0057377	929.457137592934	21.224	0.21672	21.224	21.151	21.368	0	372	85	1.3983358	0.049982667	1.3983358	284.2038	0	10.158691						322	10	3	NaN	NaN	NaN	0.030696	1	6554	6554		58.2	13.561	1	32058			25278	5985	14593	15009	20108	20108					-0.016911020987663505
SVNELIYKR	9	Unmodified	_SVNELIYKR_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000444633.1_1_10:100807788-100807923:+|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3193055169501	2	561.319306	1120.62406	1.7455	0.00097976	4.3344	0.002433	6.0798	0.0034127	561.3217949607148	15.87	0.19182	15.87	15.798	15.99	0	1221	37	0.885486	0.022078753	0.885486	359.03275	0	8.952118						169	9	3	NaN	NaN	NaN	0.42083	1	13719	13719		18.233	5.6456	1	19161			25279	3603	14594	15010	20109	20109					0.06857103397373976
SVNPGYCVSL	10	Unmodified	_SVNPGYCVSL_					0	0	0		ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7498671455	2	519.749867	1037.48518	1.3184	0.00068526	4.3634	0.0022679	5.6818	0.0029531	520.2526021026207	24.261	0.072393	24.261	24.261	24.333	0	1287	52	0.8449601	0.031347692	0.8449601	342.93436	0	12.722717						76	4	2	NaN	NaN	NaN	0.72369	1	10098	10098		6.4299	0.73577	1	8357.5			25280	2020	14595	15011	20110	20110					-0.03206182562462345
SVPAALQT	8	Unmodified	_SVPAALQT_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4355948725	1	786.435595	785.428318	2.1347	0.0016788	1.4657	0.0011527	3.6004	0.0028314	786.4366713797305	19.779	0.072199	19.765	19.741	19.813	-0.014141	552	40	1.2908988	0.023356318	1.2893794	263.0649	0	4.759674						66	4	2	NaN	NaN	NaN	0.80692	1	4489	4489		8.2903	1.4271	1	4657.5	+		25281	8169	14596	15012	20111	20111					0.027021379433335824
SVPAGGGGH	9	Unmodified	_SVPAGGGGH_					0	0	0			REV__ENSG00000115844|ENST00000234198|DLX2	REV__ENSG00000115844|ENST00000234198|DLX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3529278756001	1	738.352928	737.345651	0.049467	3.6524E-05	1.7897	0.0013214	1.8392	0.001358	738.3542934919171	58.003	0.072155	58.002	57.93	58.002	-0.00051117	447	49	1.3536539	0.028634548	1.3521345	276.16217	0	5.8418274						79	4	2	NaN	NaN	NaN	0.67818	1	3800	3800		1.072	0	1	5832.3	+		25282	9203	14597	15013	20112	20112					-0.03352759064807742
SVPAVEKSR	9	Unmodified	_SVPAVEKSR_					0	0	0		nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2;nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;ENSG00000176406|ENST00000696799|RIMS2	nc|ENSG00000176406|Q9UQ26-4|RIMS2	nc|ENSG00000176406|Q9UQ26-4|RIMS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5472705869001	1	972.547271	971.539994	1.9927	0.001938	-10.789	-0.010493	-8.7961	-0.0085546	972.5383120715587	29.908	0.12066	29.908	29.836	29.956	0	279	49	1.4535767	0.028464437	1.4535767	295.2397	0	5.781494						113	6	2	NaN	NaN	NaN	0.51576	1	7658	7658		8.962	0	1	8856.2			25283	5026	14598	15014	20113	20113					0.05308572300475589
SVPEDVARDL	10	Unmodified	_SVPEDVARDL_					0	0	0		ENSG00000042832|ENST00000220616|TG;nc|ENSG00000042832|P01266-2|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	ENSG00000042832|ENST00000220616|TG	ENSG00000042832|ENST00000220616|TG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7827528351501	2	550.782753	1099.55095	1.8309	0.0010084	-8.0132	-0.0044136	-6.1823	-0.0034051	550.7780888941638	17.834	0.16791	17.82	17.772	17.94	-0.013786	1272	76	0.854179	0.046064615	0.8526596	346.4196	0	18.681885						259	8	3	NaN	NaN	NaN	0.5626	1	12494	12494		16.858	0.44166	1	38039			25284	536	14599	15015	20114	20114					0.005159298840908377
SVPGGGRT	8	Unmodified	_SVPGGGRT_					0	0	0		ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.384228004	1	730.384228	729.376952	1.4912	0.0010892	-1.58	-0.001154	-0.08878	-6.4844E-05	730.383884610325	56.852	0.096146	56.852	56.756	56.852	0	546	67	1.294491	0.039515615	1.294491	264.1449	0	8.063263						103	5	2	NaN	NaN	NaN	0.84606	1	3751	3751		1.9246	0.85262	1	8553.5			25285	6575	14600	15016	20115	20115					0.0014381396927092283
SVPGGGRT	8	Unmodified	_SVPGGGRT_					0	0	0		ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.384228004	1	730.384228	729.376952	1.4835	0.0010836	0.62353	0.00045541	2.1071	0.001539	730.3848682709332	56.9	0.14408	56.9	56.9	57.045	0	543	67	1.296287	0.039511442	1.296287	264.51135	0	8.062408						138	7	2	NaN	NaN	NaN	0.84606	1	3752	3752		1.9246	0.85262	1	10435			25286	6575	14600	15016	20116	20116					0.0014381396927092283
SVPIIMGV	8	Unmodified	_SVPIIMGV_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.23840700220006	2	408.238407	814.462261	-0.58374	-0.0002383	10.262	0.0041894	9.6784	0.0039511	408.2427542292537	54.522	0.09642	54.521	54.497	54.593	-0.0006218	1401	40	0.77473325	0.024073124	0.7732138	315.55704	0	9.805267						140	5	4	NaN	NaN	NaN	0.84207	1	4841	4841		3.5732	0	1	15375			25287	5783	14601	15017	20117	20117					0.04760843110739188
SVPIIMGV	8	Unmodified						0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	408.238407	814.462261	1.3975	0.0005705	9.2277	0.0037671	10.625	0.0043376	408.2430076328481	54.524	0.1445	54.524	54.5	54.644	0	1404	40	0.77288127	0.024075806	0.77288127	314.8027		9.806335	0.0013694	-0.00050582	-0.00016627	NaN	3.5732	137	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16147			25288	5783	14601	15017							0.04760843110739188
SVPPRGDCCWW	11	Unmodified	_SVPPRGDCCWW_					0	0	0		ENST00000488865.2_1_1:45101919-45102123:+|nuORF	ENST00000488865.2_1_1:45101919-45102123:+|nuORF	ENST00000488865.2_1_1:45101919-45102123:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.27880014795	2	653.2788	1304.54305	1.5182	0.00099181	-1.5765	-0.0010299	-0.058268	-3.8065E-05	653.2773975149242	22.067	0.14468	22.067	21.994	22.139	0	1158	70	0.92408	0.04220128	0.92408	374.0387	0	17.081757						296	7	3	NaN	NaN	NaN	0.69801	1	18840	18840		7.5876	1.1577	1	28745			25289	7253	14602	15018	20118	20118					-0.09704243908686294
SVPRSKIA	8	Unmodified	_SVPRSKIA_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.5203275549002	1	857.520328	856.513051	2.003	0.0017176	2.6738	0.0022929	4.6768	0.0040105	857.5234808811012	58.005	0.048065	58.005	57.981	58.029	0	363	52	1.4036897	0.030335188	1.4036897	285.64185	0	6.1730347						57	3	2	NaN	NaN	NaN	0.84727	1	5496	5496		1.2418	0	1	4432.7	+		25290	13203	14603	15019	20119	20119					0.0790550847995064
SVPRSKIA	8	Unmodified						0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	857.520328	856.513051	2.003	0.0017176	2.6738	0.0022929	4.6768	0.0040105	857.5234808811012	58.005	0.048065	58.005	57.981	58.029	0	363	52	1.4036897	0.030335188	1.4036897	285.64185		6.1730347	0.0013901	-0.0024981	-0.0001324	NaN	1.2418	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4432.7	+		25291	13203	14603	15019							0.0790550847995064
SVPWYIDPSKR	11	Unmodified	_SVPWYIDPSKR_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.9067050253666	3	449.906705	1346.69829	0.90234	0.00040597	-0.58652	-0.00026388	0.31581	0.00014209	449.9073471117413	21.151	0.072281	21.151	21.127	21.2	0	1407	28	0.77102906	0.016667843	0.77102906	467.97552	0	10.116516						58	4	2	NaN	NaN	NaN	0.77168	1	19504	19504		1.2548	0.82259	1	5640.1			25292	4333	14604	15020	20120	20120					0.03880446488869893
SVPWYIDPSKR	11	Unmodified	_SVPWYIDPSKR_					0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.3564193047499	2	674.356419	1346.69829	1.2413	0.00083708	-1.5275	-0.0010301	-0.28619	-0.00019299	674.3559791420838	21.176	0.072319	21.162	21.138	21.21	-0.014004	1089	43	0.96624947	0.025636494	0.96473	390.97922	0	10.373444						73	4	3	NaN	NaN	NaN	0.68634	1	18635	18635		8.3538	4.7743	1	4881.5			25293	4333	14604	15020	20121	20121					0.03880446488869893
SVPWYIDPSKR	11	Unmodified						0	0	0		ENST00000521190.5_1_5:159840839-159846079:-|nuORF;ENSG00000164609|ENST00000297151|SLU7	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	ENST00000521190.5_1_5:159840839-159846079:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	449.906705	1346.69829	1.8266	0.0008218	-0.50231	-0.00022599	1.3243	0.00059581	450.2411322027848	21.176	0.048182	21.162	21.138	21.186	-0.014004	1404	28	0.77288127	0.016669631	0.7713618	469.0997		10.117645	0.0051335	5.6391E-05	0.00016637	NaN	1.2548	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2751.7			25294	4333	14604	15020							0.03880446488869893
SVQNCICYRP	10	Unmodified	_SVQNCICYRP_					0	0	0			REV__ENSG00000071243|ENST00000315870|ING3	REV__ENSG00000071243|ENST00000315870|ING3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7733506293	2	591.773351	1181.53215	0.89035	0.00052689	-4.7656	-0.0028202	-3.8753	-0.0022933	591.7715419261967	33.021	0.1207	33.021	32.949	33.069	0	1182	64	0.9093879	0.038594007	0.9093879	368.49307	0	15.638702						100	6	2	NaN	NaN	NaN	0.65442	1	15866	15866		11.17	0.20522	1	12075	+		25295	8577	14605	15021	20122	20122					-0.05135646282974449
SVRGKGKG	8	Unmodified	_SVRGKGKG_					0	0	0		nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4737117133002	1	788.473712	787.466435	-0.21656	-0.00017075	8.7021	0.0068614	8.4855	0.0066906	788.480349700709	56.515	0.14389	56.514	56.418	56.562	-0.00056458	513	70	1.3142352	0.041247964	1.3127158	267.80856	0	8.405273						182	7	2	NaN	NaN	NaN	0.84887	1	4504	4504		0.32989	0	1	26172			25296	1884	14606	15022	20123	20123					0.06420068648662891
SVRQYTLGEFA	11	Unmodified	_SVRQYTLGEFA_					0	0	0		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.8249520008501	2	635.824952	1269.63535	2.8328	0.0018012	-1.5521	-0.0009869	1.2807	0.00081428	635.8236413209339	19.346	0.048059	19.332	19.308	19.356	-0.014141	1128	28	0.9424274	0.016502857	0.94090796	381.575	0	6.6817627						31	3	2	NaN	NaN	NaN	0.77466	1	17415	17415		1.1768	0	1	2236.3			25297	5117	14607	15023	20124	20124					0.011318807008592557
SVSAVLGARR	10	Unmodified	_SVSAVLGARR_					0	0	0		ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.3039898037501	2	508.30399	1014.59343	2.1367	0.0010861	-1.9531	-0.00099278	0.18354	9.3295E-05	508.30283611098355	13.949	0.16811	13.949	13.925	14.093	0	1251	55	0.8670771	0.03316474	0.8670771	352.0147	0	13.464172						166	8	3	NaN	NaN	NaN	0.047882	1	9169	9169		53.14	17.844	1	23263			25298	6267	14608	15024	20125	20125					0.08671369803005291
SVSAVLGARR	10	Unmodified	_SVSAVLGARR_					0	0	0		ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	ENST00000243918.9_1_20:43991701-43991908:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.3039898037501	2	508.30399	1014.59343	1.1653	0.00059231	-0.9511	-0.00048345	0.21418	0.00010887	508.30396065588945	14.069	0.23973	14.058	13.962	14.202	-0.010672	1251	58	0.8670771	0.035009086	0.8655577	352.01468	0	14.212952						174	11	3	NaN	NaN	NaN	0.039609	1	8994	8994		55.592	18.289	1	21043			25299	6267	14608	15024	20126	20126					0.08671369803005291
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.2561739439	2	471.256174	940.497795	1.3938	0.00065682	-2.4848	-0.001171	-1.091	-0.00051415	471.25471154879733	16.182	0.16805	16.182	16.134	16.302	0	1374	58	0.791392	0.03515333	0.791392	321.62668	0	14.28656						217	8	3	NaN	NaN	NaN	0.089764	1	6831	6831		37.302	18.184	1	22429			25300	4466	14609	15025	20127	20127					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.2561739439	2	471.256174	940.497795	0.851	0.00040104	-1.2867	-0.00060637	-0.43572	-0.00020534	471.25573477579417	16.179	0.14388	16.166	16.094	16.238	-0.012993	1371	55	0.79324204	0.033297777	0.7917226	322.37854	0	13.53244						216	7	3	NaN	NaN	NaN	0.16939	1	6692	6692		27.296	10.88	1	24085			25301	4466	14609	15025	20128	20128					0.025165968920987325
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	370.86825032243337	3	370.86825	1109.58292	2.1797	0.00080838	-2.7302	-0.0010126	-0.55055	-0.00020418	370.86696709384756	13.733	0.14418	13.733	13.709	13.853	0	1413	61	0.7673241	0.037065744	0.7673241	466.7348	0	22.545746						132	7	2	NaN	NaN	NaN	0.41241	1	13266	13266		14.959	9.5095	1	15320			25302	2022	14610	15026	20129	20129					0.03251342357907561
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7987372503501	2	555.798737	1109.58292	1.9561	0.0010872	-1.0548	-0.00058624	0.90132	0.00050095	555.7980843181191	13.757	0.12011	13.757	13.709	13.829	0	1215	40	0.8891654	0.023914814	0.8891654	360.5682	0	9.697754						150	6	3	NaN	NaN	NaN	0.042793	1	13267	13267		54.277	29.877	1	20342			25303	2022	14610	15026	20130	20130					0.03251342357907561
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7987372503501	2	555.798737	1109.58292	1.3063	0.00072606	-1.6563	-0.00092057	-0.34998	-0.00019452	555.7980474190457	13.829	0.14378	13.818	13.77	13.914	-0.010673	1215	40	0.8891654	0.023912191	0.88764596	360.56824	0	9.696716						161	7	3	NaN	NaN	NaN	0.031913	1	12887	12887		58.769	28.734	1	19696			25304	2022	14610	15026	20131	20131					0.03251342357907561
SVSEVHPSRL	10	Unmodified	_SVSEVHPSRL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.86825032243337	3	370.86825	1109.58292	1.5648	0.00058034	-0.73703	-0.00027334	0.82778	0.000307	370.8678216933402	13.829	0.14377	13.818	13.746	13.89	-0.010673	1413	67	0.7673241	0.04077238	0.76580465	466.73477	0	24.800293						152	7	2	NaN	NaN	NaN	0.28195	1	12888	12888		23.353	15.075	1	13548			25305	2022	14610	15026	20132	20132					0.03251342357907561
SVSGSEPVM	9	Unmodified	_SVSGSEPVM_					0	0	0		ENST00000555284.1_1_14:81736911-81745120:-|nuORF;nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.4080594930001	1	892.408059	891.400783	2.3227	0.0020728	0.53492	0.00047737	2.8576	0.0025501	892.4082026859687	17.858	0.16791	17.844	17.82	17.988	-0.013786	420	43	1.3697531	0.025033832	1.3682337	278.56354	0	5.0910645						89	8	2	NaN	NaN	NaN	0.028349	1	5823	5823		61.271	36.31	1	5071.8			25306	3246	14611	15027	20133	20133					-0.04926133379206021
SVSKKAIT	8	Unmodified	_SVSKKAIT_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.5090941666	1	833.509094	832.501818	-0.37379	-0.00031156	-0.63658	-0.0005306	-1.0104	-0.00084216	833.50874994011	56.515	0.11993	56.514	56.442	56.562	-0.00056458	441	43	1.3572328	0.025049925	1.3557134	276.314	0	5.099823						100	6	2	NaN	NaN	NaN	0.84756	1	5057	5057		1.072	0	1	8078.4			25307	5304	14612	15028	20134	20134					0.07886686385802477
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15	ENSG00000085832|ENST00000371733|EPS15	ENSG00000085832|ENST00000371733|EPS15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.78202455365	2	473.782025	945.549496	1.3597	0.00064419	-2.841	-0.001346	-1.4813	-0.00070183	473.780514836109	15.486	0.072075	15.486	15.462	15.534	0	1371	40	0.79324204	0.0240497	0.79324204	322.35373	0	9.773193						68	4	2	NaN	NaN	NaN	0.3947	1	6973	6973		13.949	4.9868	1	9227.5			25308	976	14613	15029	20135	20135					0.07454340585991304
SVSNVVITK	9	Unmodified						0	0	0		ENSG00000085832|ENST00000371733|EPS15;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15	ENSG00000085832|ENST00000371733|EPS15	ENSG00000085832|ENST00000371733|EPS15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.782025	945.549496	1.0674	0.00050573	-2.9288	-0.0013876	-1.8614	-0.00088189	473.7797383060546	15.484	0.095882	15.472	15.448	15.544	-0.012201	1374	31	0.791392	0.018500745	0.7898726	321.60193		7.5182495	-0.007053	-4.414E-05	-0.0016847	NaN	13.949	88	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7608.8			25309	976	14613	15029							0.07454340585991304
SVSRLHVEEA	10	Unmodified	_SVSRLHVEEA_					0	0	0		ENST00000317371.8_1_3:8675535-8681636:-|nuORF;ENST00000484585.5_1_3:8675535-8686428:-|nuORF	ENST00000317371.8_1_3:8675535-8681636:-|nuORF	ENST00000317371.8_1_3:8675535-8681636:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7961945614001	2	563.796195	1125.57784	1.6572	0.00093434	7.6517	0.004314	9.3089	0.0052483	563.8013656975942	24.671	0.19299	24.671	24.623	24.816	0	1206	88	0.894683	0.05331379	0.894683	362.74237	0	21.615662						192	9	4	NaN	NaN	NaN	0.74182	1	13915	13915		5.1889	0.45981	1	29804			25310	6470	14614	15030	20136	20136					0.020070384952759923
SVTSADPVF	9	Unmodified	_SVTSADPVF_					0	0	0		ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR	ENSG00000124275|ENST00000440940|MTRR	ENSG00000124275|ENST00000440940|MTRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4516388672	1	922.451639	921.444362	2.0566	0.0018971	-1.3437	-0.0012395	0.71285	0.00065757	922.4516791075699	23.272	0.048225	23.258	23.258	23.307	-0.013294	381	46	1.3929803	0.026783466	1.3914609	283.1468	0	5.444214						65	3	2	NaN	NaN	NaN	0.03623	1	6309	6309		52.758	13.84	1	4264.4			25311	2410	14615	15031	20137	20137					-0.01950200610428965
SVVAPGGG	8	Unmodified	_SVVAPGGG_					0	0	0			REV__ENSG00000115318|ENST00000264094|LOXL3	REV__ENSG00000115318|ENST00000264094|LOXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.3409662058002	1	643.340966	642.33369	0.56965	0.00036648	6.6377	0.0042703	7.2073	0.0046368	643.3451359763508	53.312	0.35956	53.312	53.24	53.599	-0.00053406	741	139	1.1773466	0.08309305	1.1758271	240.84074	0	16.997711						659	16	4	NaN	NaN	NaN	0.84876	1	1690	1690		0.39566	0	1	245450	+		25312	9184	14616	15032	20138	20138					-0.0017837580797959163
SVVKLKCQ	8	Unmodified	_SVVKLKCQ_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.5284494002	1	904.528449	903.521173	2.4291	0.0021971	-2.576	-0.0023301	-0.14697	-0.00013294	904.5264786370782	25.346	0.096497	25.334	25.31	25.407	-0.012011	1236	40	0.876284	0.023930311	0.8747646	178.17154	0	4.8656616						98	5	2	NaN	NaN	NaN	0.84887	1	6030	6030		0.32989	0	1	8084.1			25313	3567	14617	15033	20139	20139					0.06555319405049431
SVVKLKCQ	8	Unmodified						0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	904.528449	903.521173	2.0227	0.0018296	-3.6835	-0.0033319	-1.6609	-0.0015023	904.5250030541487	25.322	0.072348	25.322	25.298	25.371	0	1233	43	0.87812483	0.02576691	0.87812483	178.54582		5.23909	-0.0059139	-0.00053152	0.0016801	NaN	0.32989	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8601.6			25314	3567	14617	15033							0.06555319405049431
SVVSVGGG	8	Unmodified	_SVVSVGGG_					0	0	0		nc|ENSG00000186806|Q86VR7-2|VSIG10L	nc|ENSG00000186806|Q86VR7-2|VSIG10L	nc|ENSG00000186806|Q86VR7-2|VSIG10L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.3515308921002	1	661.351531	660.344254	-0.15374	-0.00010168	7.9099	0.0052312	7.7562	0.0051296	661.3564225862981	58.434	0.11994	58.434	58.41	58.53	-0.00048447	546	136	1.294491	0.08091807	1.2929716	264.6536	0	16.54338						161	6	3	NaN	NaN	NaN	0.84887	1	2227	2227		0.32989	0	1	16958			25315	8004	14618	15034	20140	20140					0.0004960684644856883
SVYGITLTL	9	Unmodified	_SVYGITLTL_					0	0	0		nc|ENSG00000184307|Q8IYP9|ZDHHC23;ENSG00000184307|ENST00000638807|ZDHHC23	nc|ENSG00000184307|Q8IYP9|ZDHHC23	nc|ENSG00000184307|Q8IYP9|ZDHHC23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5506246303001	1	966.550625	965.543348	1.4245	0.0013769	-0.088924	-8.595E-05	1.3356	0.0012909	966.5501908390492	29.449	0.072451	29.449	29.425	29.498	0	234	82	1.4802408	0.04798031	1.4802408	300.68158	0	9.746246						122	4	2	NaN	NaN	NaN	0.20577	1	7509	7509		24.961	0	1	14178			25316	5347	14619	15035	20141	20141					0.059198223544854045
SVYGITLTL	9	Unmodified						0	0	0		nc|ENSG00000184307|Q8IYP9|ZDHHC23;ENSG00000184307|ENST00000638807|ZDHHC23	nc|ENSG00000184307|Q8IYP9|ZDHHC23	nc|ENSG00000184307|Q8IYP9|ZDHHC23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	966.550625	965.543348	1.0335	0.00099898	-0.6807	-0.00065793	0.35285	0.00034105	966.5495510196871	29.449	0.12064	29.442	29.417	29.538	-0.0070667	234	76	1.4802408	0.044416666	1.4787214	300.68158		9.022369	-0.0039155	-0.0003941	-0.00075972	NaN	24.961	149	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14681			25317	5347	14619	15035							0.059198223544854045
SVYSWDIVVQR	11	Unmodified	_SVYSWDIVVQR_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.3538766158	2	676.353877	1350.6932	1.4834	0.0010033	-3.836	-0.0025945	-2.3526	-0.0015912	676.3522485049949	25.202	0.096542	25.202	25.178	25.274	0	1095	73	0.9625867	0.043934107	0.9625867	389.48544	0	17.776794						183	5	3	NaN	NaN	NaN	0.53563	1	19550	19550		17.198	12.01	1	19602			25318	1235	14620	15036	20142	20142					0.03188142626277113
SVYSWDIVVQR	11	Unmodified	_SVYSWDIVVQR_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3538766158	2	676.353877	1350.6932	1.376	0.00093067	-5.3298	-0.0036049	-3.9538	-0.0026742	676.3502297070532	25.226	0.096514	25.214	25.165	25.262	-0.012011	1095	64	0.9625867	0.03846103	0.96106726	389.48547	0	15.562256						169	5	3	NaN	NaN	NaN	0.22541	1	18675	18675		28.296	20.018	1	19095			25319	1235	14620	15036	20143	20143					0.03188142626277113
SWCCLWLCLS	10	Unmodified	_SWCCLWLCLS_					0	0	0		ENST00000563885.5_1_16:67862648-67864187:-|nuORF;ENST00000436104.6_1_16:67862410-67864187:-|nuORF;ENST00000568495.5_1_16:67862172-67864127:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.17827406249995	3	405.178274	1212.51299	1.3015	0.00052733	1.8729	0.00075886	3.1744	0.0012862	405.17888826508255	32.658	0.072395	32.655	32.631	32.703	-0.0031052	1476	34	0.72837335	0.020427108	0.7268539	442.58154	0	12.41214						52	4	2	NaN	NaN	NaN	0.77421	1	16109	16109		0.71611	0	1	4432.9			25320	6992	14621	15037	20144	20144					-0.08476318898237878
SWCSQPGL	8	Unmodified	_SWCSQPGL_					0	0	0			REV__ENSG00000155367|ENST00000309276|PPM1J	REV__ENSG00000155367|ENST00000309276|PPM1J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.197270469	2	439.19727	876.379988	1.2247	0.00053787	-8.9625	-0.0039363	-7.7379	-0.0033984	439.192901930773	55.1	0.096348	55.1	55.052	55.148	0	1380	46	0.7876915	0.027755678	0.7876915	320.45984	0	11.291962						115	5	3	NaN	NaN	NaN	0.84692	1	5742	5742		1.4396	0	1	17547	+		25321	10109	14622	15038	20145	20145					-0.06314678968215048
SWEDAAILL	9	Unmodified	_SWEDAAILL_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.5251381613001	1	1017.52514	1016.51786	1.9554	0.0019897	-1.2004	-0.0012215	0.75496	0.00076819	1017.5240414283095	32.828	0.24131	32.828	32.756	32.997	0	165	73	1.5210435	0.042542934	1.5210435	308.7518	0	8.635651						324	11	4	NaN	NaN	NaN	0.043119	1	9233	9233		49.833	17.38	1	31979			25322	1238	14623	15039	20146	20146					0.010263478320553077
SWEDAAILL	9	Unmodified	_SWEDAAILL_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.5251381613001	1	1017.52514	1016.51786	1.4505	0.001476	0.5317	0.00054102	1.9822	0.002017	1017.5252798004451	32.827	0.16886	32.824	32.776	32.945	-0.0031052	165	67	1.5210435	0.038989425	1.5195241	308.7518	0	7.914337						236	8	3	NaN	NaN	NaN	0.043119	1	9056	9056		49.833	17.38	1	26693			25323	1238	14623	15039	20147	20147					0.010263478320553077
SWFKPLSSLTF	11	Unmodified	_SWFKPLSSLTF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.85043846985	2	656.850438	1311.68632	0.56743	0.00037272	-4.0467	-0.0026581	-3.4793	-0.0022854	656.848093465366	31.091	0.14481	31.091	31.042	31.187	0	1107	49	0.9552588	0.029314697	0.9552588	386.63684	0	11.86499						124	7	2	NaN	NaN	NaN	0.43953	1	18980	18980		32.377	22.017	1	14865			25324	3086	14624	15040	20148	20148					0.04294829745686002
SWFKPLSSLTF	11	Unmodified	_SWFKPLSSLTF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.85043846985	2	656.850438	1311.68632	0.84355	0.00055409	-5.9446	-0.0039047	-5.1011	-0.0033506	656.8466431662134	31.138	0.19306	31.133	31.084	31.277	-0.0050716	1104	49	0.9570911	0.029311538	0.95557165	387.37845	0	11.8637085						204	9	3	NaN	NaN	NaN	0.050973	1	18141	18141		69.574	47.803	1	19362			25325	3086	14624	15040	20149	20149					0.04294829745686002
SWGKHKNAGE	10	Unmodified	_SWGKHKNAGE_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2754293295501	2	557.275429	1112.53631	1.4803	0.00082492	1.8278	0.0010186	3.3081	0.0018435	557.7784262799827	27.929	0.072403	27.929	27.905	27.977	0	1239	31	0.87444305	0.018408895	0.87444305	354.58655	0	7.464813						61	4	2	NaN	NaN	NaN	0.6772	1	13372	13372		9.6116	2.0713	1	8264	+		25326	8492	14625	15041	20150	20150					-0.01546097473374175
SWLAENLNW	9	Unmodified	_SWLAENLNW_					0	0	0		chr2:131688303-131722417|522|29.16|0.0|21.48|+|1|C2orf27A,NBEAP2|1	chr2:131688303-131722417|522|29.16|0.0|21.48|+|1|C2orf27A,NBEAP2|1	chr2:131688303-131722417|522|29.16|0.0|21.48|+|1|C2orf27A,NBEAP2|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7747308378001	2	566.774731	1131.53491	1.2445	0.00070538	-0.020982	-1.1892E-05	1.2236	0.00069349	567.2753010580831	29.207	0.024158	29.2	29.175	29.2	-0.0077209	1224	61	0.883646	0.036790013	0.88212657	358.24472	0	14.915283						52	2	2	NaN	NaN	NaN	0.44082	1	13687	13687		12.049	1.4437	1	6625.1			25327	139	14626	15042	20151	20151					-0.025597315621325833
SWLSTLLVE	9	Unmodified	_SWLSTLLVE_					0	0	0			REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2896824102501	2	524.289682	1046.56481	1.5793	0.00082799	-0.82622	-0.00043318	0.75305	0.00039482	524.2896581614896	19.444	0.192	19.444	19.396	19.588	0	1269	79	0.8560222	0.047925293	0.8560222	347.38452	0	19.4487						311	9	4	NaN	NaN	NaN	0.29681	1	10496	10496		19.118	0.88482	1	51702	+		25328	8518	14627	15043	20152	20152					0.04339207383191024
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.82729772455	2	620.827298	1239.64004	0.80271	0.00049835	-2.1604	-0.0013413	-1.3577	-0.00084291	620.8261217185977	31.935	0.12067	31.935	31.839	31.959	0	1152	49	0.92775106	0.029365301	0.92775106	375.7306	0	11.89267						111	6	2	NaN	NaN	NaN	0.63397	1	17518	17518		12.57	5.7065	1	11247			25329	3765	14628	15044	20153	20153					0.029808096342549106
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.82729772455	2	620.827298	1239.64004	0.98621	0.00061226	-1.6253	-0.001009	-0.6391	-0.00039677	620.8265518682531	31.139	0.38614	31.139	30.994	31.38	0	1149	94	0.92958635	0.056873858	0.92958635	376.47385	0	23.033386						765	17	3	NaN	NaN	NaN	0.01359	1	17520	17520		66.656	31.36	1	277760			25330	3765	14628	15044	20154	20154					0.029808096342549106
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.82729772455	2	620.827298	1239.64004	0.18572	0.0001153	-3.6889	-0.0022902	-3.5032	-0.0021749	620.825024285192	31.91	0.14477	31.906	31.81	31.954	-0.0037613	1146	64	0.93142134	0.0385316	0.9299019	377.217	0	15.60495						161	7	2	NaN	NaN	NaN	0.47445	1	16779	16779		20.513	14.263	1	15209			25331	3765	14628	15044	20155	20155					0.029808096342549106
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.82729772455	2	620.827298	1239.64004	1.0448	0.00064862	-1.8665	-0.0011587	-0.8217	-0.00051013	620.8260537453655	31.138	0.41027	31.133	30.988	31.398	-0.0050716	1143	97	0.9332562	0.05869901	0.93173677	377.96008	0	23.772552						784	18	3	NaN	NaN	NaN	0.12158	1	16780	16780		42.995	10.542	1	302430			25332	3765	14628	15044	20156	20156					0.029808096342549106
SWPLEEVVL	9	Unmodified	_SWPLEEVVL_					0	0	0		nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5720883539	1	1071.57209	1070.56481	1.2245	0.0013122	-0.84923	-0.00091001	0.37531	0.00040217	1071.5727689558655	34.059	0.2172	34.059	33.938	34.155	0	135	115	1.5387528	0.067195654	1.5387528	312.13544	0	13.630615						336	10	3	NaN	NaN	NaN	0.011942	1	11586	11586		87.021	48.103	1	38493			25333	7916	14629	15045	20157	20157					0.0323520738318166
SWPLEEVVL	9	Unmodified						0	0	0		nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1071.57209	1070.56481	0.89786	0.00096212	0.036007	3.8584E-05	0.93387	0.0010007	1071.5708131056972	34.033	0.19309	34.032	33.96	34.153	-0.0012474	129	115	1.5422925	0.06718135	1.540773	312.85342		13.627716	-0.013296	0.00056711	0.0010101	NaN	87.021	328	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38678			25334	7916	14629	15045							0.0323520738318166
SWPRIIMRF	9	Unmodified	_SWPRIIMRF_					0	0	0		nc|ENSG00000197345|Q7Z2W9-2|MRPL21;ENSG00000197345|ENST00000362034|MRPL21	nc|ENSG00000197345|Q7Z2W9-2|MRPL21	nc|ENSG00000197345|Q7Z2W9-2|MRPL21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.55858261363335	3	402.558583	1204.65392	1.5867	0.00063873	-3.4353	-0.0013829	-1.8486	-0.00074417	402.89165907934876	25.805	0.21716	25.805	25.66	25.877	0	1395	34	0.7784366	0.020365238	0.7784366	473.03616	0	12.375397						174	10	3	NaN	NaN	NaN	0.41766	1	16617	16617		8.2775	4.9731	1	14172			25335	5696	14630	15046	20158	20158					0.05977763861733365
SWPRIIMRF	9	Unmodified						0	0	0		nc|ENSG00000197345|Q7Z2W9-2|MRPL21;ENSG00000197345|ENST00000362034|MRPL21	nc|ENSG00000197345|Q7Z2W9-2|MRPL21	nc|ENSG00000197345|Q7Z2W9-2|MRPL21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	402.558583	1204.65392	2.8084	0.0011305	-4.859	-0.001956	-2.0507	-0.00082551	402.5560473121677	26.07	0.048277	26.059	26.059	26.107	-0.011137	1398	22	0.77658504	0.01296109	0.7750656	471.911		7.876129	0.12705	-0.0012435	-0.0016855	NaN	8.2775	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2629.6			25336	5696	14630	15046							0.05977763861733365
SWPSGAGA	8	Unmodified	_SWPSGAGA_					0	0	0		ENST00000418663.5_1_7:76255996-76256215:+|nuORF	ENST00000418663.5_1_7:76255996-76256215:+|nuORF	ENST00000418663.5_1_7:76255996-76256215:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.6692031338	2	366.669203	731.323853	1.3934	0.00051091	-2.7008	-0.00099029	-1.3074	-0.00047938	366.6697040200781	28.435	0.072426	28.426	28.402	28.474	-0.0089798	1578	37	0.6651217	0.022365391	0.66360223	271.42007	0	9.12677						116	4	4	NaN	NaN	NaN	0.84727	1	3693	3693		1.2418	0	1	12765			25337	6897	14631	15047	20159	20159					-0.052555638133753746
SWPWLGKWG	9	Unmodified	_SWPWLGKWG_					0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7849015936	2	558.784902	1115.55525	1.5333	0.00085678	-1.4233	-0.00079534	0.10994	6.1434E-05	558.7846707881887	15.534	0.12006	15.534	15.51	15.63	0	1251	46	0.8670771	0.027632773	0.8670771	351.58804	0	11.204712						119	6	2	NaN	NaN	NaN	0.63698	1	13498	13498		3.9685	0	1	15227			25338	7639	14632	15048	20160	20160					0.0020948388830674958
SWQDLKDH	8	Unmodified	_SWQDLKDH_					0	0	0		ENST00000548792.1_1_12:120899824-120901956:-|nuORF;ENST00000603963.1_1_12:120899824-120902572:-|nuORF;SRSF1|p.G156Ifs*27|1|0.04|ENSG00000136450|chr17:58005887-58005888|-/TCAAAGAGGTCAAAAT|frameshift_variant;nc|ENSG00000136450|Q07955-3|SRSF1;ENSG00000111786|ENST00000229390|SRSF9;ENSG00000136450|ENST00000258962|SRSF1;nc|ENSG00000136450|Q07955-2|SRSF1	ENST00000548792.1_1_12:120899824-120901956:-|nuORF	ENST00000548792.1_1_12:120899824-120901956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7434307094001	2	514.743431	1027.47231	0.46473	0.00023922	3.626	0.0018665	4.0907	0.0021057	514.7451543858391	31.693	0.16896	31.688	31.64	31.809	-0.0044174	1278	49	0.85049206	0.029505253	0.8489726	345.22357	0	11.976501						216	8	3	NaN	NaN	NaN	0.75347	1	9463	9463		15.463	1.7256	1	56392			25339	1837	14633	15049	20161	20161					-0.04032877630334042
SWSEAGGILF	10	Unmodified	_SWSEAGGILF_					0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5203871344	1	1066.52039	1065.51311	1.019	0.0010867	-0.06256	-6.6721E-05	0.9564	0.00102	1066.520258251964	31.404	0.12065	31.404	31.38	31.501	0	174	91	1.5157272	0.053133607	1.5157272	307.48322	0	10.778748						146	6	2	NaN	NaN	NaN	0.070973	1	11362	11362		49.961	29.448	1	16541			25340	103	14634	15050	20162	20162					-0.017025363107222802
SWSEAGGILF	10	Unmodified						0	0	0		CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	CHAF1A|p.K425Rfs*7|1|0.39|ENSG00000167670|chr19:4423357-4423357|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1066.52039	1065.51311	0.75649	0.00080681	0.13452	0.00014347	0.89102	0.00095029	1066.5203107969062	31.403	0.072386	31.398	31.374	31.446	-0.0050716	174	70	1.5157272	0.040755033	1.5142077	307.48322		8.26767	-0.0030587	9.7178E-05	-0.00075972	NaN	49.961	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11818			25341	103	14634	15050							-0.017025363107222802
SWSPEEAEAW	10	Unmodified	_SWSPEEAEAW_					0	0	0		nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	nc|ENSG00000085644|O14771-2|ZNF213	nc|ENSG00000085644|O14771-2|ZNF213	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.25128553125	2	596.251286	1190.48802	0.85536	0.00051001	7.9062	0.0047141	8.7616	0.0052241	596.757332279147	31.331	0.12062	31.326	31.326	31.446	-0.0050716	1203	43	0.8965218	0.025739074	0.89500237	363.24802	0	10.428833						77	6	3	NaN	NaN	NaN	0.72631	1	15542	15542		6.2502	1.3405	1	5278.8			25342	971	14635	15051	20163	20163					-0.09960635903962611
SWSSWCGWQ	9	Unmodified	_SWSSWCGWQ_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.72418371125	2	563.724184	1125.43381	1.2181	0.00068667	8.4621	0.0047703	9.6802	0.005457	564.2298118986902	30.97	0.19308	30.97	30.922	31.115	0	1245	97	0.87076044	0.058927655	0.87076044	353.04373	0	23.891785						289	9	3	NaN	NaN	NaN	0.51576	1	13883	13883		8.962	1.3744	1	33369	+		25343	8459	14636	15052	20164	20164					-0.12388506536512978
SWVDSKTSF	9	Unmodified	_SWVDSKTSF_					0	0	0			REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75346407945	2	528.753464	1055.49238	1.5109	0.0007989	2.2628	0.0011965	3.7738	0.0019954	528.7552211723525	23.778	0.2651	23.765	23.669	23.934	-0.013048	1269	64	0.8560222	0.038715184	0.85450274	347.34637	0	15.709381						380	12	5	NaN	NaN	NaN	0.51576	1	10645	10645		8.962	0	1	114680	+		25344	8924	14637	15053	20165	20165					-0.03315126690381476
SWVDSKTSF	9	Unmodified						0	0	0			REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.753464	1055.49238	1.8936	0.0010012	2.4107	0.0012747	4.3043	0.0022759	528.7555035620863	23.754	0.21684	23.754	23.73	23.947	0	1272	58	0.854179	0.03502804	0.854179	346.59845		14.213257	-0.0053552	8.8866E-05	-0.00016187	NaN	8.962	324	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103090	+		25345	8924	14637	15053							-0.03315126690381476
SWVDSKTSF	9	Unmodified						0	0	0			REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	REV__ENST00000564216.5_1_15:75094247-75094851:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.753464	1055.49238	1.5109	0.0007989	2.2628	0.0011965	3.7738	0.0019954	528.7552211723525	23.778	0.2651	23.765	23.669	23.934	-0.013048	1269	64	0.8560222	0.038715184	0.85450274	347.34637		15.709381	0.0053552	-6.7487E-05	0.00016187	NaN	8.962	380	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114680	+		25346	8924	14637	15053							-0.03315126690381476
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.4938380329	1	1061.49384	1060.48656	1.6631	0.0017654	4.3098	0.0045748	5.9729	0.0063402	1061.494588345984	32.659	0.19303	32.659	32.635	32.828	0	111	109	1.5529068	0.06370616	1.5529068	315.04462	0	12.924347						323	9	4	NaN	NaN	NaN	0.013281	1	11109	11109		82.96	24.725	1	48191			25347	6082	14638	15054	20166	20166					-0.04126225202048772
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4938380329	1	1061.49384	1060.48656	1.1174	0.0011861	3.6617	0.0038868	4.779	0.0050729	1061.496099860325	32.658	0.14481	32.655	32.631	32.776	-0.0031052	108	100	1.5546752	0.058394194	1.5531558	315.40338	0	11.84668						325	7	4	NaN	NaN	NaN	0.0034808	1	10864	10864		106.56	67.099	1	45899			25348	6082	14638	15054	20167	20167					-0.04126225202048772
SYADIQSWL	9	Unmodified	_SYADIQSWL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14;chr1:200605390-200605864|464|12.56|0.51|4.61|-|0|KIF14,KIF14|1	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.76128911155	2	541.761289	1081.50803	1.0426	0.00056484	-2.7134	-0.00147	-1.6708	-0.00090516	541.7606491736279	31.21	0.12069	31.205	31.181	31.302	-0.0050716	1242	37	0.87260187	0.022093058	0.8710824	353.96417	0	8.961884						124	6	3	NaN	NaN	NaN	0.39244	1	11727	11727		14.042	3.99	1	13240			25349	2167	14639	15055	20168	20168					-0.02946840173331111
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2480145608	2	515.248015	1028.48148	2.133	0.001099	-4.0127	-0.0020675	-1.8797	-0.00096852	515.2459772850027	30.101	0.14482	30.101	30.077	30.222	0	1281	37	0.84864825	0.022126555	0.84864825	344.47073	0	8.981293						166	7	3	NaN	NaN	NaN	0.048656	1	9704	9704		47.482	5.1639	1	19956			25350	2245	14640	15056	20169	20169					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.4887526549999	1	1029.48875	1028.48148	2.0966	0.0021584	-0.10988	-0.00011313	1.9867	0.0020453	1029.4878042294993	30.101	0.16894	30.101	30.077	30.246	0	165	82	1.5210435	0.04785812	1.5210435	308.7037	0	9.713074						290	8	3	NaN	NaN	NaN	0.024221	1	9707	9707		66.656	16.695	1	47160			25351	2245	14640	15056	20170	20170					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.2480145608	2	515.248015	1028.48148	0.87405	0.00045035	-2.6232	-0.0013516	-1.7492	-0.00090126	515.2467023113037	30.1	0.096504	30.094	30.07	30.166	-0.0064106	1278	40	0.85049206	0.02396655	0.8489726	345.21912	0	9.728149						131	5	3	NaN	NaN	NaN	0.060816	1	9508	9508		42.318	11.707	1	21046			25352	2245	14640	15056	20171	20171					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;WDR11-PDLIM1|1|fusion	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.4887526549999	1	1029.48875	1028.48148	1.0391	0.0010697	0.3652	0.00037597	1.4043	0.0014457	1029.4891477799877	30.1	0.12064	30.094	30.07	30.19	-0.0064106	165	70	1.5210435	0.040759444	1.5195241	308.7037	0	8.272339						261	6	4	NaN	NaN	NaN	0.030669	1	9509	9509		58.235	2.8224	1	40773			25353	2245	14640	15056	20172	20172					-0.03162529064661612
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.26006769105	2	544.260068	1086.50558	1.4719	0.00080109	-1.7251	-0.00093891	-0.25322	-0.00013782	544.2596192156925	32.949	0.33787	32.949	32.756	33.094	0	1194	160	0.902037	0.097604334	0.902037	365.88315	0	39.59015						646	15	5	NaN	NaN	NaN	0.060816	1	12234	12234		42.318	15.586	1	472780			25354	1292	14641	15057	20173	20173					-0.034210119026511165
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5128589155	1	1087.51286	1086.50558	1.3406	0.0014579	4.6821	0.0050918	6.0227	0.0065498	1087.5190278858663	32.949	0.072392	32.949	32.925	32.997	0	654	133	1.2297117	0.079301834	1.2297117	249.39995	0	16.083359						197	4	3	NaN	NaN	NaN	0.077759	1	12239	12239		39.039	19.876	1	15820			25355	1292	14641	15057	20174	20174					-0.034210119026511165
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.26006769105	2	544.260068	1086.50558	1.6622	0.0009047	-1.6197	-0.00088154	0.042544	2.3155E-05	544.2595329069848	32.948	0.31351	32.945	32.873	33.186	-0.0024757	1194	97	0.902037	0.058863997	0.9005176	365.88315	0	23.876343						708	14	6	NaN	NaN	NaN	0.070055	1	11922	11922		40.154	13.422	1	489180			25356	1292	14641	15057	20175	20175					-0.034210119026511165
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.5128589155	1	1087.51286	1086.50558	0.908	0.00098746	3.6152	0.0039316	4.5232	0.004919	1087.5161864823394	32.948	0.096497	32.945	32.921	33.018	-0.0024757	654	121	1.2297117	0.072069526	1.2281922	249.39995	0	14.616547						186	5	2	NaN	NaN	NaN	0.011206	1	11924	11924		89.256	56.803	1	16230			25357	1292	14641	15057	20176	20176					-0.034210119026511165
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(58)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2575250021	2	552.257525	1102.5005	1.8157	0.0010027	-0.49214	-0.00027179	1.3236	0.00073094	552.2574464746256	28.846	0.33787	28.846	28.75	29.087	0	1200	121	0.89836043	0.073611856	0.89836043	364.32562	0	29.852905						1275	15	5	NaN	NaN	NaN	0.030696	1	12931	12931		58.2	32.085	1	920160			25358	1292	14641	15058	20177	20177		142			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(53)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2575250021	2	552.257525	1102.5005	1.9053	0.0010522	-0.85469	-0.00047201	1.0507	0.00058023	552.2572835390051	28.869	0.28958	28.861	28.74	29.03	-0.0083504	1200	118	0.89836043	0.07176763	0.896841	364.32562	0	29.105011						1248	13	5	NaN	NaN	NaN	0.03618	1	12595	12595		52.78	20.327	1	955480			25359	1292	14641	15058	20178	20178		142			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(61)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5077735375999	1	1103.50777	1102.5005	1.5951	0.0017602	-0.18449	-0.00020359	1.4106	0.0015566	1103.5074046716884	28.869	0.28959	28.861	28.765	29.054	-0.0083504	69	127	1.5776473	0.074245214	1.5761279	319.90714	0	15.055054						786	13	4	NaN	NaN	NaN	0.028569	1	12596	12596		60.984	40.428	1	153410			25360	1292	14641	15058	20179	20179		142			-0.04665315765282685
SYADWFKASF	10	Unmodified	_SYADWFKASF_					0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.2823886944	2	611.282389	1220.55022	0.94062	0.00057498	-2.9612	-0.0018101	-2.0205	-0.0012351	611.2816564518915	28.991	0.072433	28.991	28.967	29.039	0	1179	52	0.9112251	0.031232655	0.9112251	369.10126	0	12.651123						89	4	2	NaN	NaN	NaN	0.63781	1	16990	16990		12.307	2.6951	1	17244			25361	5517	14642	15059	20180	20180					-0.05122864764962287
SYADWFKASF	10	Unmodified	_SYADWFKASF_					0	0	0		nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	nc|ENSG00000187741|O15360-3|FANCA	nc|ENSG00000187741|O15360-3|FANCA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.2823886944	2	611.282389	1220.55022	0.63195	0.0003863	-2.7582	-0.001686	-2.1263	-0.0012997	611.2801330531883	28.99	0.16891	28.982	28.958	29.127	-0.0077229	1179	61	0.9112251	0.036734402	0.90970564	369.10126	0	14.879669						182	8	2	NaN	NaN	NaN	0.34981	1	16306	16306		25.681	16.762	1	26955			25362	5517	14642	15059	20181	20181					-0.05122864764962287
SYAELIMKL	9	Unmodified	_SYAELIMKL_					0	0	0		ENST00000585906.5_1_18:43437816-43497657:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2939105084001	2	534.293911	1066.57327	1.9235	0.0010277	1.2527	0.00066929	3.1762	0.001697	534.293040575986	27.881	0.096518	27.881	27.857	27.953	0	1245	40	0.87076044	0.02393806	0.87076044	353.27942	0	9.711975						109	5	3	NaN	NaN	NaN	0.2345	1	11420	11420		23.118	10.115	1	11450			25363	3769	14643	15060	20182	20182					0.042644380281672056
SYAELIMKL	9	Unmodified						0	0	0		ENST00000585906.5_1_18:43437816-43497657:-|nuORF;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	ENST00000585906.5_1_18:43437816-43497657:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.293911	1066.57327	0.8072	0.00043128	0.93952	0.00050198	1.7467	0.00093326	534.2941388868054	27.904	0.12065	27.895	27.87	27.991	-0.009552	1245	46	0.87076044	0.027626812	0.869241	353.27942		11.208557	0.0069194	-0.00017956	-0.00075972	NaN	23.118	97	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9247.2			25364	3769	14643	15060							0.042644380281672056
SYAGPLPIF	9	Unmodified	_SYAGPLPIF_					0	0	0		ENSG00000159714|ENST00000565726|ZDHHC1;nc|ENSG00000159714|Q8WTX9|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5138451935	1	964.513845	963.506569	1.26	0.0012152	-2.0278	-0.0019559	-0.76786	-0.00074061	964.5121624166783	32.345	0.072441	32.345	32.297	32.37	0	297	127	1.4428991	0.07475889	1.4428991	293.10507	0	15.186249						243	4	3	NaN	NaN	NaN	0.24994	1	7441	7441		22.126	9.1235	1	20368			25365	4037	14644	15061	20183	20183					0.023355705285553086
SYAGPLPIF	9	Unmodified	_SYAGPLPIF_					0	0	0		ENSG00000159714|ENST00000565726|ZDHHC1;nc|ENSG00000159714|Q8WTX9|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5138451935	1	964.513845	963.506569	0.82791	0.00079853	-0.93388	-0.00090074	-0.10597	-0.00010221	964.5132955878966	32.344	0.096546	32.341	32.268	32.365	-0.0037613	297	97	1.4428991	0.056934953	1.4413797	293.10507	0	11.565582						220	5	3	NaN	NaN	NaN	0.042649	1	7288	7288		50.033	27.906	1	18306			25366	4037	14644	15061	20184	20184					0.023355705285553086
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.28018035645	2	544.28018	1086.54581	1.6062	0.00087423	-3.0639	-0.0016676	-1.4577	-0.00079341	544.2783077932042	11.932	0.095973	11.932	11.932	12.028	0	1209	31	0.892844	0.018391013	0.892844	362.1541	0	7.459717						69	5	2	NaN	NaN	NaN	0.19455	1	12248	12248		25.681	3.9103	1	4888.2			25367	6967	14645	15062	20185	20185					0.005996708121301708
SYALCLILI	9	Unmodified	_SYALCLILI_					0	0	0			REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.7935463676501	2	504.793546	1007.57254	2.0863	0.0010532	-6.9886	-0.0035278	-4.9022	-0.0024746	504.7901627658063	25.781	0.19301	25.781	25.684	25.877	0	1275	46	0.85233563	0.027650714	0.85233563	346.06226	0	11.226654						202	9	3	NaN	NaN	NaN	0.12945	1	8901	8901		31.561	7.7106	1	26773	+		25368	11987	14646	15063	20186	20186					0.06905643379127469
SYALCLILI	9	Unmodified	_SYALCLILI_					0	0	0			REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.7935463676501	2	504.793546	1007.57254	1.8674	0.00094264	-6.6902	-0.0033772	-4.8228	-0.0024345	504.7905236257927	25.78	0.21721	25.769	25.745	25.962	-0.0116	1275	49	0.85233563	0.029498875	0.8508162	346.06226	0	11.97702						166	10	2	NaN	NaN	NaN	0.078597	1	8730	8730		38.918	0.30999	1	25259	+		25369	11987	14646	15063	20187	20187					0.06905643379127469
SYALCLILI	9	Unmodified						0	0	0			REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	504.793546	1007.57254	2.0863	0.0010532	-6.9886	-0.0035278	-4.9022	-0.0024746	504.7901627658063	25.781	0.19301	25.781	25.684	25.877	0	1275	46	0.85233563	0.027650714	0.85233563	346.06226		11.226654	0.0059336	-0.00011742	0.00075972	NaN	38.918	202	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26773	+		25370	11987	14646	15063							0.06905643379127469
SYALCLILI	9	Unmodified						0	0	0			REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.793546	1007.57254	1.8674	0.00094264	-6.6902	-0.0033772	-4.8228	-0.0024345	504.7905236257927	25.78	0.21721	25.769	25.745	25.962	-0.0116	1275	49	0.85233563	0.029498875	0.8508162	346.06226		11.97702	-0.0059336	0.00018383	-0.00075972	NaN	38.918	166	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25259	+		25371	11987	14646	15063							0.06905643379127469
SYALLTYMI	9	Unmodified	_SYALLTYMI_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5539954486999	1	1074.554	1073.54672	1.5352	0.0016496	-0.6479	-0.0006962	0.88727	0.00095342	1074.5544582402	34.396	0.12053	34.396	34.348	34.469	0	66	88	1.579413	0.051234603	1.579413	320.372	0	10.392578						250	6	3	NaN	NaN	NaN	0.14301	1	11714	11714		29.598	9.0429	1	25437			25372	5046	14647	15064	20188	20188					0.012887491368246629
SYALLTYMI	9	Unmodified	_SYALLTYMI_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5539954486999	1	1074.554	1073.54672	1.3093	0.0014069	0.1657	0.00017806	1.475	0.0015849	1074.5543271942236	34.395	0.12049	34.395	34.346	34.467	-0.0006485	63	85	1.5811787	0.0494653	1.5796592	320.73013	0	10.033661						286	6	3	NaN	NaN	NaN	0.043119	1	11412	11412		49.833	15.394	1	25472			25373	5046	14647	15064	20189	20189					0.012887491368246629
SYANVKQWL	9	Unmodified	_SYANVKQWL_					0	0	0		nc|ENSG00000233111|Q92928|RAB1C;ENSG00000174903|ENST00000311481|RAB1B	nc|ENSG00000233111|Q92928|RAB1C	nc|ENSG00000233111|Q92928|RAB1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7929235909501	2	554.792924	1107.57129	1.5393	0.000854	-3.6686	-0.0020353	-2.1293	-0.0011813	554.7903874268208	22.958	0.16857	22.945	22.945	23.113	-0.01354	1224	79	0.883646	0.047858	0.88212657	358.33804	0	19.40747						290	8	3	NaN	NaN	NaN	0.13999	1	12810	12810		30.035	5.4734	1	54292			25374	4965	14648	15065	20190	20190					0.021811453345662812
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.72216395105	2	500.722164	999.429775	1.4416	0.00072184	-1.8667	-0.00093472	-0.42514	-0.00021288	500.72105101257756	21.151	0.096392	21.151	21.127	21.224	0	1365	31	0.7969414	0.018492699	0.7969414	323.60678	0	7.509186						67	5	2	NaN	NaN	NaN	0.38313	1	8551	8551		14.425	4.679	1	6009.3			25375	3787	14649	15066	20191	20191					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4370514355	1	1000.43705	999.429775	1.695	0.0016957	2.3335	0.0023345	4.0285	0.0040302	1000.4397851644871	21.151	0.096392	21.151	21.127	21.224	0	255	37	1.4678029	0.021332502	1.4678029	298.0128	0	4.3311768						71	5	2	NaN	NaN	NaN	0.1507	1	8553	8553		28.495	11.911	1	4945.7			25376	3787	14649	15066	20192	20192					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.72216395105	2	500.722164	999.429775	1.165	0.00058333	-3.1442	-0.0015744	-1.9792	-0.00099105	500.72012139892763	21.152	0.16854	21.138	21.114	21.282	-0.014004	1365	37	0.7969414	0.02219367	0.79542196	323.60678	0	9.011993						99	8	2	NaN	NaN	NaN	0.13999	1	8364	8364		30.035	10.917	1	8193			25377	3787	14649	15066	20193	20193					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4370514355	1	1000.43705	999.429775	1.9186	0.0019194	0.61479	0.00061506	2.5334	0.0025345	1000.4363033289122	21.152	0.072231	21.138	21.114	21.186	-0.014004	255	34	1.4678029	0.019551635	1.4662834	298.0128	0	3.969635						59	4	2	NaN	NaN	NaN	0.46215	1	8365	8365		11.17	2.88	1	4121.7			25378	3787	14649	15066	20194	20194					-0.06996272758567557
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.80074862305	2	573.800749	1145.58694	1.6568	0.00095065	0.49842	0.00028599	2.1552	0.0012366	573.8008028320958	26.746	0.19357	26.746	26.698	26.891	0	1173	73	0.91489893	0.044100344	0.91489893	370.8604	0	17.876373						473	9	5	NaN	NaN	NaN	0.0084155	1	14654	14654		95.62	59.385	1	105090			25379	1191	14650	15067	20195	20195					0.01997431851600595
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENST00000459646.1_1_22:38039726-38040999:+|nuORF;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENSG00000100092|ENST00000649765|SH3BP1	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENST00000459646.1_1_22:38039726-38040999:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.80074862305	2	573.800749	1145.58694	1.0716	0.00061486	0.5811	0.00033344	1.6527	0.0009483	573.8012894441126	26.77	0.19309	26.759	26.735	26.928	-0.010645	1173	73	0.91489893	0.044100344	0.9133795	370.8604	0	17.876373						415	9	3	NaN	NaN	NaN	0.017076	1	14170	14170		75.698	50.737	1	103140			25380	1191	14650	15067	20196	20196					0.01997431851600595
SYAPAAPA	8	Unmodified	_SYAPAAPA_					0	0	0		tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	tr|U7SLW4|U7SLW4_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01912PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3671809562999	1	747.367181	746.359904	1.3886	0.0010378	6.1771	0.0046166	7.5657	0.0056544	747.3718848492722	29.714	0.096497	29.707	29.683	29.779	-0.0070648	522	64	1.3088527	0.037693262	1.3073332	266.9633	0	7.688202						113	5	2	NaN	NaN	NaN	0.80071	1	3915	3915		9.1232	2.3292	1	9575.1			25381	13770	14651	15068	20197	20197					-0.023421066365358456
SYAPCSYLAL	10	Unmodified	_SYAPCSYLAL_					0	0	0			REV__nc|ENSG00000176842|P78411-2|IRX5	REV__nc|ENSG00000176842|P78411-2|IRX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2600676910499	2	544.260068	1086.50558	1.2244	0.00066637	-0.64423	-0.00035063	0.58014	0.00031575	544.2583634047218	34.154	0.096569	34.153	34.153	34.249	-0.0012474	1194	58	0.902037	0.034937263	0.9005176	365.88315	0	14.171204						95	5	2	NaN	NaN	NaN	0.76548	1	11923	11923		3.5698	1.1083	1	9387.9	+		25382	10757	14652	15069	20198	20198					-0.03421011902673854
SYAPPTDSF	9	Unmodified	_SYAPPTDSF_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.4309034251	1	984.430903	983.423627	2.3797	0.0023426	-0.48129	-0.0004738	1.8984	0.0018688	984.430759899517	21.73	0.36135	21.73	21.657	22.019	0	327	160	1.425088	0.09443414	1.425088	289.40433	0	19.17749						1196	16	4	NaN	NaN	NaN	0.0018626	1	7992	7992		111.43	50.162	1	191080			25383	2181	14653	15070	20199	20199					-0.06874790990093516
SYAPPTDSF	9	Unmodified	_SYAPPTDSF_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.4309034251	1	984.430903	983.423627	2.0423	0.0020105	-0.6371	-0.00062718	1.4052	0.0013833	984.4301421707329	21.705	0.28893	21.691	21.643	21.932	-0.013897	324	163	1.42687	0.09621084	1.4253505	289.7662	0	19.5383						1195	13	4	NaN	NaN	NaN	0.00020136	1	7817	7817		116.74	58.137	1	189150			25384	2181	14653	15070	20200	20200					-0.06874790990093516
SYAQGFMLL	9	Unmodified	_SYAQGFMLL_					0	0	0		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5073796071001	1	1029.50738	1028.5001	1.3797	0.0014204	1.6931	0.0017431	3.0728	0.0031635	1029.5079436596059	32.273	0.14481	32.273	32.225	32.37	0	114	58	1.5511382	0.033603072	1.5511382	314.8115	0	6.8199463						152	7	3	NaN	NaN	NaN	0.048656	1	9714	9714		47.482	24.147	1	12661			25385	3381	14654	15071	20201	20201					-0.013006906944383445
SYAQGFMLL	9	Unmodified	_SYAQGFMLL_					0	0	0		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5073796071001	1	1029.50738	1028.5001	0.86967	0.00089533	2.4926	0.0025661	3.3622	0.0034615	1029.5103987917362	32.272	0.096561	32.268	32.22	32.316	-0.0037613	111	49	1.5529068	0.028295875	1.5513873	315.17044	0	5.742798						105	5	2	NaN	NaN	NaN	0.12328	1	9514	9514		32.453	13.334	1	12363			25386	3381	14654	15071	20202	20202					-0.013006906944383445
SYAQHIASI	9	Unmodified	_SYAQHIASI_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000539759.5_1_11:47639025-47663996:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.2561739438999	2	495.256174	988.497795	2.12	0.0010499	-1.4025	-0.00069459	0.71752	0.00035535	495.25580456289265	18.053	0.11993	18.053	18.029	18.149	0	1314	37	0.8283535	0.0221529	0.8283535	336.41254	0	8.996765						107	6	3	NaN	NaN	NaN	0.38313	1	8161	8161		14.425	3.8201	1	9305.5			25387	1741	14655	15072	20203	20203					0.003085968920800042
SYAQHIASI	9	Unmodified						0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000539759.5_1_11:47639025-47663996:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	495.256174	988.497795	1.7174	0.00085055	-0.23947	-0.0001186	1.4779	0.00073196	495.2560651635583	18.098	0.12001	18.084	18.036	18.156	-0.013786	1317	40	0.8265074	0.024000287	0.82498795	335.66275		9.74704	0.015569	0.0005322	-0.0016828	NaN	14.425	114	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9321.2			25388	1741	14655	15072							0.003085968920800042
SYARHFLDF	9	Unmodified	_SYARHFLDF_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2827230454	2	578.282723	1154.55089	1.8305	0.0010585	2.1428	0.0012391	3.9733	0.0022977	578.2824138550592	22.139	0.16887	22.139	22.091	22.26	0	1170	46	0.91673553	0.027546287	0.91673553	371.57056	0	11.165039						134	8	2	NaN	NaN	NaN	0.21451	1	14960	14960		24.4	6.4306	1	20162			25389	5179	14656	15073	20204	20204					-0.020200253252596667
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8040195935	2	612.80402	1223.59349	1.7449	0.0010693	-1.8798	-0.001152	-0.13497	-8.2713E-05	612.8025281706027	18.508	0.16789	18.508	18.484	18.652	0	1194	49	0.902037	0.029403389	0.902037	365.3694	0	11.909821						176	8	2	NaN	NaN	NaN	0.085203	1	17060	17060		48.002	26.152	1	28529			25390	1463	14657	15074	20205	20205					-0.009366749876789981
SYASLQQNKW	10	Unmodified	_SYASLQQNKW_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8040195935	2	612.80402	1223.59349	1.3609	0.00083398	-1.5618	-0.00095711	-0.20092	-0.00012312	612.8028371016203	18.53	0.19192	18.516	18.492	18.684	-0.01395	1191	49	0.90387505	0.029403389	0.9023556	366.11386	0	11.909821						182	9	2	NaN	NaN	NaN	0.10581	1	16369	16369		45.165	24.652	1	26426			25391	1463	14657	15074	20206	20206					-0.009366749876789981
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7923922746999	2	508.792392	1015.57023	1.5345	0.00078074	-2.8825	-0.0014666	-1.348	-0.00068587	508.7903360420474	27.253	0.048254	27.253	27.253	27.302	0	1263	46	0.85970795	0.027647734	0.85970795	349.0185	0	11.224213						69	3	2	NaN	NaN	NaN	0.17818	1	9213	9213		26.732	14.144	1	7350.3			25392	5331	14658	15075	20207	20207					0.06306930965638458
SYATLLHVL	9	Unmodified						0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.792392	1015.57023	1.1129	0.00056622	-0.31491	-0.00016022	0.79796	0.000406	508.79195980025804	27.325	0.048258	27.315	27.267	27.315	-0.010124	1260	52	0.8615505	0.031330705	0.8600311	349.7665		12.719421	0.030758	0.001482	0.00016157	NaN	26.732	64	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7242.4			25393	5331	14658	15075							0.06306930965638458
SYATPVDLW	9	Unmodified	_SYATPVDLW_					0	0	0		ENSG00000105810|ENST00000424848|CDK6;ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5094880970998	1	1051.50949	1050.50221	2.3578	0.0024793	0.62902	0.00066142	2.9869	0.0031407	1051.5089469719974	29.884	0.19306	29.884	29.763	29.956	0	144	67	1.533442	0.038956285	1.533442	311.1337	0	7.9042053						290	9	4	NaN	NaN	NaN	0.013281	1	10644	10644		82.96	45.658	1	31654			25394	1566	14659	15076	20208	20208					-0.021019386850184674
SYATPVDLW	9	Unmodified	_SYATPVDLW_					0	0	0		ENSG00000105810|ENST00000424848|CDK6;ENST00000473078.1_1_7:92300738-92355023:-|nuORF	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5094880970998	1	1051.50949	1050.50221	1.2681	0.0013334	0.84194	0.0008853	2.1101	0.0022187	1051.509918725271	29.883	0.24127	29.876	29.731	29.972	-0.0070667	141	58	1.5352125	0.033638716	1.5336931	311.49292	0	6.8252563						281	11	3	NaN	NaN	NaN	0.0040938	1	10423	10423		104.71	67.408	1	30210			25395	1566	14659	15076	20209	20209					-0.021019386850184674
SYATVYLI	8	Unmodified	_SYATVYLI_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4978607782999	1	929.497861	928.490584	1.6916	0.0015723	-0.36397	-0.00033831	1.3276	0.001234	929.4970903004555	29.28	0.12064	29.28	29.232	29.353	0	276	55	1.4553556	0.032022476	1.4553556	295.79257	0	6.5083923						119	6	2	NaN	NaN	NaN	0.62311	1	6561	6561		23.85	6.0701	1	12155			25396	3004	14660	15077	20210	20210					0.02347864291652968
SYATVYLI	8	Unmodified	_SYATVYLI_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4978607782999	1	929.497861	928.490584	0.91763	0.00085294	1.1763	0.0010933	2.0939	0.0019463	929.4993094179475	29.28	0.096514	29.272	29.248	29.344	-0.0077229	276	55	1.4553556	0.03201914	1.4538362	295.79257	0	6.5076904						153	5	3	NaN	NaN	NaN	0.23746	1	6432	6432		47.04	11.004	1	14070			25397	3004	14660	15077	20211	20211					0.02347864291652968
SYCYPPLC	8	Unmodified	_SYCYPPLC_					0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.19588187299996	2	473.195882	944.377211	1.4602	0.00069094	-2.5351	-0.0011996	-1.0749	-0.00050865	473.1951656355713	29.232	0.3379	29.232	29.184	29.522	0	1338	55	0.81357855	0.033261716	0.81357855	330.62387	0	13.516968						590	15	5	NaN	NaN	NaN	0.75682	1	6921	6921		15.013	0.97131	1	224860	+		25398	12285	14661	15078	20212	20212					-0.09720270417392385
SYCYPPLC	8	Unmodified	_SYCYPPLC_					0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	945.3844872794	1	945.384487	944.377211	1.4655	0.0013855	-0.94415	-0.00089259	0.5214	0.00049292	945.3839792284364	29.232	0.19303	29.232	29.208	29.401	0	324	97	1.42687	0.05705011	1.42687	289.93173	0	11.592224						378	9	3	NaN	NaN	NaN	0.62311	1	6922	6922		23.85	8.6751	1	44307	+		25399	12285	14661	15078	20213	20213					-0.09720270417392385
SYCYPPLC	8	Unmodified	_SYCYPPLC_					0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.3844872794	1	945.384487	944.377211	1.251	0.0011827	-1.3486	-0.0012749	-0.09757	-9.2241E-05	945.3836801543747	29.256	0.19305	29.248	29.2	29.393	-0.0077229	324	79	1.42687	0.046343327	1.4253505	289.93173	0	9.416718						358	9	3	NaN	NaN	NaN	0.69631	1	6783	6783		19.285	1.5044	1	35637	+		25400	12285	14661	15078	20214	20214					-0.09720270417392385
SYCYPPLC	8	Unmodified						0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	945.384487	944.377211	1.4655	0.0013855	-0.94415	-0.00089259	0.5214	0.00049292	945.3839792284364	29.232	0.19303	29.232	29.208	29.401	0	324	97	1.42687	0.05705011	1.42687	289.93173		11.592224	-0.0078234	0.00020186	0.00075972	NaN	23.85	378	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44307	+		25401	12285	14661	15078							-0.09720270417392385
SYCYPPLC	8	Unmodified						0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	473.195882	944.377211	1.4602	0.00069094	-2.5351	-0.0011996	-1.0749	-0.00050865	473.1951656355713	29.232	0.3379	29.232	29.184	29.522	0	1338	55	0.81357855	0.033261716	0.81357855	330.62387		13.516968	-0.0078234	-0.00053066	0.00075972	NaN	15.013	590	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224860	+		25402	12285	14661	15078							-0.09720270417392385
SYCYPPLC	8	Unmodified						0	0	0			REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	REV__ENST00000464265.5_1_21:38439605-38441890:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	945.384487	944.377211	1.251	0.0011827	-1.3486	-0.0012749	-0.09757	-9.2241E-05	945.3836801543747	29.256	0.19305	29.248	29.2	29.393	-0.0077229	324	79	1.42687	0.046343327	1.4253505	289.93173		9.416718	0.0078234	-0.00018048	-0.00075972	NaN	23.85	358	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35637	+		25403	12285	14661	15078							-0.09720270417392385
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7587464226	2	555.758746	1109.50294	1.3042	0.00072479	1.6247	0.00090292	2.9288	0.0016277	555.7599063403748	24.044	0.19307	24.044	24.019	24.213	0	1218	82	0.8873258	0.049690664	0.8873258	359.82254	0	20.150238						240	9	3	NaN	NaN	NaN	0.10956	1	13246	13246		34.439	17.58	1	59871			25404	2765	14662	15079	20215	20215					-0.04743144035955993
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	ENST00000592802.1_1_17:73847561-73851408:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7587464226	2	555.758746	1109.50294	1.456	0.0008092	1.1826	0.00065722	2.6386	0.0014664	555.7596953797978	24.067	0.096506	24.055	24.006	24.103	-0.012749	1218	70	0.8873258	0.042333663	0.8858064	359.82254	0	17.16684						179	5	3	NaN	NaN	NaN	0.074859	1	12877	12877		39.459	18.945	1	51424			25405	2765	14662	15079	20216	20216					-0.04743144035955993
SYDIAMRFL	9	Unmodified	_SYDIAMRFL_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2813344494001	2	558.281334	1114.54812	1.8644	0.0010408	-10.931	-0.0061026	-9.0667	-0.0050618	558.2752203563468	24.261	0.24124	24.261	24.237	24.478	0	1233	229	0.87812483	0.1399234	0.87812483	356.07172	0	56.73767						1014	11	5	NaN	NaN	NaN	0.060816	1	13457	13457		42.318	0.53309	1	1029000			25406	737	14663	15080	20217	20217					-0.004576167744062332
SYDLFVNSF	9	Unmodified	_SYDLFVNSF_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000543594.5_1_11:61131784-61132000:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5044027191998	1	1091.5044	1090.49713	1.3734	0.0014991	0.85722	0.00093566	2.2307	0.0024348	1091.5058823430247	31.356	0.14481	31.356	31.308	31.452	0	102	91	1.5582114	0.053026676	1.5582114	316.00903	0	10.753937						325	7	3	NaN	NaN	NaN	7.4733E-08	1	12418	12418		138.77	82.815	1	54163			25407	3680	14664	15081	20218	20218					-0.044502425476366625
SYDLFVNSF	9	Unmodified	_SYDLFVNSF_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000543594.5_1_11:61131784-61132000:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5044027191998	1	1091.5044	1090.49713	0.8583	0.00093684	1.2576	0.0013727	2.1159	0.0023095	1091.505927723325	31.331	0.19304	31.326	31.253	31.446	-0.0050716	99	106	1.5599792	0.06189394	1.5584598	316.36755	0	12.552246						359	9	3	NaN	NaN	NaN	0.024221	1	12109	12109		66.656	43.539	1	57379			25408	3680	14664	15081	20219	20219					-0.044502425476366625
SYDLSDITQAD	11	Unmodified	_SYDLSDITQAD_					0	0	0		ENST00000485583.1_1_7:100179936-100183723:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENST00000485583.1_1_7:100179936-100183723:-|nuORF	ENST00000485583.1_1_7:100179936-100183723:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.27241490385	2	614.272415	1226.53028	0.9284	0.00057029	4.2312	0.0025991	5.1596	0.0031694	614.2756442900858	24.96	0.12064	24.948	24.9	25.02	-0.012394	1161	70	0.9222442	0.04222405	0.92072475	373.54428	0	17.102356						215	6	4	NaN	NaN	NaN	0.62211	1	16450	16450		12.57	1.0213	1	23917			25409	870	14665	15082	20220	20220					-0.07392705286247292
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.4738308723	1	1098.47383	1097.46655	1.5426	0.0016945	0.72738	0.00079901	2.27	0.0024935	1098.4752714402475	24.333	0.19301	24.333	24.285	24.478	0	156	70	1.5263584	0.040737867	1.5263584	309.5246	0	8.261078						360	9	4	NaN	NaN	NaN	7.4733E-08	1	12721	12721		138.77	80.538	1	53414			25410	731	14666	15083	20221	20221					-0.0782802093265218
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.4738308723	1	1098.47383	1097.46655	1.8479	0.0020298	-0.057768	-6.3457E-05	1.7901	0.0019664	1098.4738688413295	24.333	0.21721	24.32	24.272	24.489	-0.012749	156	97	1.5263584	0.05666375	1.5248389	309.5246	0	11.490631						340	10	4	NaN	NaN	NaN	0.022082	1	12390	12390		69.363	33.128	1	47419			25411	731	14666	15083	20222	20222					-0.0782802093265218
SYDPLRIYLF	10	Unmodified	_SYDPLRIYLF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.8426134377501	2	643.842613	1285.67067	1.6065	0.0010343	-0.66144	-0.00042586	0.94502	0.00060844	643.8423083439557	31.983	0.28958	31.983	31.935	32.225	0	1101	64	0.95892316	0.038481772	0.95892316	388.20178	0	15.578583						408	13	4	NaN	NaN	NaN	0.12997	1	18536	18536		41.839	26.376	1	88611			25412	2973	14667	15084	20223	20223					0.039265432286583746
SYDPLRIYLF	10	Unmodified	_SYDPLRIYLF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.8426134377501	2	643.842613	1285.67067	1.4617	0.0009411	-0.44137	-0.00028417	1.0203	0.00065692	643.8425578134729	32.031	0.26542	32.027	31.93	32.196	-0.0037613	1101	67	0.95892316	0.040316403	0.9574037	388.20178	0	16.32132						436	12	4	NaN	NaN	NaN	0.26776	1	17706	17706		29.706	11.473	1	94170			25413	2973	14667	15084	20224	20224					0.039265432286583746
SYDPLVIYL	9	Unmodified	_SYDPLVIYL_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5768393807998	1	1082.57684	1081.56956	1.5226	0.0016484	-0.50169	-0.00054311	1.021	0.0011053	1082.575529363957	34.517	0.14479	34.517	34.469	34.614	0	66	70	1.579413	0.0406214	1.579413	320.34183	0	8.238983						216	7	3	NaN	NaN	NaN	0.12945	1	12059	12059		31.561	4.8295	1	22573			25414	2224	14668	15085	20225	20225					0.03204091525935837
SYDPLVIYL	9	Unmodified	_SYDPLVIYL_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5768393807998	1	1082.57684	1081.56956	1.3909	0.0015058	-1.214	-0.0013142	0.17696	0.00019157	1082.575021281301	34.516	0.16885	34.515	34.443	34.612	-0.0006485	66	70	1.579413	0.040617228	1.5778936	320.34186	0	8.238129						213	8	3	NaN	NaN	NaN	0.030391	1	11744	11744		58.599	22.013	1	22252			25415	2224	14668	15085	20226	20226					0.03204091525935837
SYDPSTGEVYC	11	Unmodified	_SYDPSTGEVYC_					0	0	0		nc|ENSG00000118514|Q9H2A2-3|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.7424360439	2	610.742436	1219.47032	0.97699	0.00059669	0.89484	0.00054652	1.8718	0.0011432	611.2457333375254	28.942	0.072407	28.933	28.909	28.982	-0.0083485	1179	49	0.9112251	0.02940017	0.90970564	369.10492	0	11.908966						67	4	2	NaN	NaN	NaN	0.77166	1	16277	16277		1.7022	0.77633	1	5700.6			25416	2180	14669	15086	20227	20227					-0.13063719221099745
SYDPSTGEVYC	11	Unmodified						0	0	0		nc|ENSG00000118514|Q9H2A2-3|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	610.742436	1219.47032	0.97723	0.00059684	1.7367	0.0010607	2.714	0.0016575	611.2449914132809	28.943	0.048294	28.943	28.918	28.967	0	1179	43	0.9112251	0.025725186	0.9112251	369.1049		10.420349	0.0045442	0.00046215	0.00075972	NaN	1.7022	86	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7294.5			25417	2180	14669	15086							-0.13063719221099745
SYDPTIENTF	10	Unmodified	_SYDPTIENTF_					0	0	0		ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.7667684199499	2	593.766768	1185.51898	1.2231	0.00072621	-3.7407	-0.0022211	-2.5177	-0.0014949	594.2633252611463	24.767	0.14479	24.767	24.719	24.864	0	1194	85	0.902037	0.05146706	0.902037	365.50024	0	20.854156						246	7	3	NaN	NaN	NaN	0.085203	1	16016	16016		48.002	24.885	1	34962			25418	1609	14670	15087	20228	20228					-0.06635482589740604
SYDTRVYIW	9	Unmodified	_SYDTRVYIW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.79566324515	2	601.795663	1201.57677	1.7859	0.0010747	-5.4992	-0.0033094	-3.7133	-0.0022347	601.7922604040814	25.226	0.19305	25.226	25.105	25.298	0	1146	124	0.93142134	0.0753178	0.93142134	377.3486	0	30.513641						526	9	2	NaN	NaN	NaN	0.34922	1	16519	16519		15.822	3.2522	1	178910			25419	1706	14671	15088	20229	20229					-0.015951758736491684
SYDTRVYIW	9	Unmodified	_SYDTRVYIW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.79566324515	2	601.795663	1201.57677	1.6087	0.00096814	-6.0165	-0.0036207	-4.4078	-0.0026526	601.79225453651	25.226	0.16887	25.214	25.141	25.31	-0.012011	1173	130	0.91489893	0.07900041	0.9133795	370.65482	0	32.005585						719	8	3	NaN	NaN	NaN	0.090258	1	15872	15872		37.231	18.067	1	185000			25420	1706	14671	15088	20230	20230					-0.015951758736491684
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2689469681501	2	574.268947	1146.52334	1.1049	0.00063452	-1.2236	-0.00070267	-0.11867	-6.8146E-05	574.2680918162815	33.962	0.19308	33.962	33.89	34.083	0	1239	70	0.87444305	0.042329073	0.87444305	354.45792	0	17.158203						416	9	4	NaN	NaN	NaN	0.017836	1	14677	14677		93.929	41.149	1	105320			25421	840	14672	15089	20231	20231					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1147.5306174697	1	1147.53062	1146.52334	2.1668	0.0024865	-0.23989	-0.00027528	1.927	0.0022112	1147.5310568172765	33.962	0.16896	33.962	33.914	34.083	0	63	67	1.5811787	0.038845062	1.5811787	320.47092	0	7.873047						401	8	4	NaN	NaN	NaN	0.024118	1	14678	14678		84.233	44.079	1	73476			25422	840	14672	15089	20232	20232					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2689469681501	2	574.268947	1146.52334	0.87426	0.00050206	-0.62553	-0.00035922	0.24874	0.00014284	574.2686133348299	33.961	0.19313	33.96	33.911	34.105	-0.0012474	1236	79	0.876284	0.047842503	0.8747646	355.20416	0	19.393066						405	9	4	NaN	NaN	NaN	0.032021	1	14190	14190		72.428	45.132	1	106990			25423	840	14672	15089	20233	20233					-0.044059733761287134
SYDVFQLEF	9	Unmodified	_SYDVFQLEF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1147.5306174697	1	1147.53062	1146.52334	1.7988	0.0020641	0.51318	0.00058889	2.3119	0.002653	1147.5311136587043	33.961	0.21724	33.96	33.911	34.129	-0.0012474	63	70	1.5811787	0.040612817	1.5796592	320.47092	0	8.231354						352	10	3	NaN	NaN	NaN	0.012337	1	14191	14191		106.42	73.972	1	61854			25424	840	14672	15089	20234	20234					-0.044059733761287134
SYESQEDEWE	10	Unmodified	_SYESQEDEWE_					0	0	0			REV__ENSG00000113739|ENST00000265087|STC2	REV__ENSG00000113739|ENST00000265087|STC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.49832844196663	3	434.498328	1300.47316	1.5151	0.0006583	-9.7322	-0.0042286	-8.2171	-0.0035703	434.4939201928323	23.272	0.072363	23.258	23.234	23.307	-0.013294	1395	37	0.7784366	0.02221781	0.77691716	472.64188	0	13.489929						69	4	2	NaN	NaN	NaN	0.74434	1	17949	17949		5.0169	1.7124	1	10333	+		25425	9160	14673	15090	20235	20235					-0.16506172562594656
SYESQEDEWE	10	Unmodified						0	0	0			REV__ENSG00000113739|ENST00000265087|STC2	REV__ENSG00000113739|ENST00000265087|STC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	434.498328	1300.47316	1.5151	0.0006583	-9.7322	-0.0042286	-8.2171	-0.0035703	434.4939201928323	23.272	0.072363	23.258	23.234	23.307	-0.013294	1395	37	0.7784366	0.02221781	0.77691716	472.64188		13.489929	0.005157	-0.00016788	0.00016607	NaN	5.0169	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10333	+		25426	9160	14673	15090							-0.16506172562594656
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.2954960696501	2	627.295496	1252.57644	1.9539	0.0012257	-1.1595	-0.00072737	0.79438	0.00049831	627.294689084853	28.026	0.26545	28.026	27.953	28.219	0	1164	88	0.9204082	0.05321604	0.9204082	372.71436	0	21.54956						418	12	4	NaN	NaN	NaN	0.020011	1	17842	17842		71.985	32.526	1	111710			25427	2706	14674	15091	20236	20236					-0.03974595593467711
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2954960696501	2	627.295496	1252.57644	1.0604	0.00066519	0.066388	4.1645E-05	1.1268	0.00070684	627.2953405673046	28.073	0.24137	28.064	27.968	28.209	-0.0089779	1164	97	0.9204082	0.05870533	0.91888875	372.71436	0	23.77243						630	11	4	NaN	NaN	NaN	0.020011	1	17077	17077		71.985	27.346	1	127300			25428	2706	14674	15091	20237	20237					-0.03974595593467711
SYFEHNLETW	10	Unmodified	_SYFEHNLETW_					0	0	0		ENSG00000204590|ENST00000376621|GNL1	ENSG00000204590|ENST00000376621|GNL1	ENSG00000204590|ENST00000376621|GNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.29348469695	2	663.293485	1324.57242	1.9222	0.001275	-3.0203	-0.0020034	-1.0981	-0.00072837	663.792970198614	24.043	0.16887	24.031	23.982	24.151	-0.012749	1149	76	0.92958635	0.04585606	0.9280669	376.20786	0	18.558167						234	8	2	NaN	NaN	NaN	0.00033362	1	18312	18312		95.291	55.832	1	41836			25429	5897	14675	15092	20238	20238					-0.07688685087191516
SYFMIFLMIM	10	Unmodified	_SYFMIFLMIM_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.31547407995	2	648.315474	1294.6164	1.5229	0.00098735	6.3335	0.0041061	7.8564	0.0050934	648.3215365113293	29.546	0.19312	29.546	29.449	29.642	0	1152	64	0.92775106	0.038523257	0.92775106	375.55475	0	15.594269						155	9	2	NaN	NaN	NaN	0.77318	1	18678	18678		2.1763	0.84517	1	13824	+		25430	8920	14676	15093	20239	20239					-0.019128315104353533
SYFMIFLMIM	10	Unmodified						0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	648.315474	1294.6164	1.5229	0.00098735	6.3335	0.0041061	7.8564	0.0050934	648.3215365113293	29.546	0.19312	29.546	29.449	29.642	0	1152	64	0.92775106	0.038523257	0.92775106	375.55475		15.594269	-0.056385	-3.3754E-05	-0.0010754	NaN	2.1763	155	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13824	+		25431	8920	14676	15093							-0.019128315104353533
SYFMIFLMIM	10	Unmodified						0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	648.315474	1294.6164	1.1671	0.00075662	6.381	0.0041369	7.5481	0.0048935	648.3210487155977	29.666	0.14477	29.659	29.562	29.707	-0.0070648	1146	73	0.93142134	0.044014752	0.9299019	377.0405		17.8172	0.056385	2.7933E-05	0.0010754	NaN	2.1763	181	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15597	+		25432	8920	14676	15093							-0.019128315104353533
SYFPKILTF	9	Unmodified	_SYFPKILTF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.31041785235	2	558.310418	1114.60628	1.6642	0.00092912	-7.7667	-0.0043362	-6.1026	-0.0034071	558.8066550338477	29.811	0.1207	29.811	29.763	29.884	0	1248	100	0.8689189	0.06075275	0.8689189	352.33853	0	24.634674						313	6	4	NaN	NaN	NaN	0.04743	1	13471	13471		48.002	24.668	1	49865			25433	3194	14677	15094	20240	20240					0.05356388142513424
SYFPKILTF	9	Unmodified	_SYFPKILTF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.31041785235	2	558.310418	1114.60628	1.0956	0.00061167	-7.5687	-0.0042257	-6.4731	-0.003614	558.8058711436398	29.835	0.193	29.828	29.755	29.948	-0.0070667	1245	100	0.87076044	0.06075275	0.869241	353.0853	0	24.634674						375	9	4	NaN	NaN	NaN	0.12104	1	13083	13083		32.778	19.775	1	53261			25434	3194	14677	15094	20241	20241					0.05356388142513424
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;ENST00000477629.1_1_3:58135593-58136214:+|nuORF;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8238893683501	2	621.823889	1241.63323	0.67505	0.00041976	-2.896	-0.0018008	-2.221	-0.0013811	621.8229298636384	33.287	0.12067	33.287	33.238	33.359	0	1182	85	0.9093879	0.051400423	0.9093879	368.28714	0	20.816315						261	6	3	NaN	NaN	NaN	0.11611	1	17573	17573		38.131	13.569	1	23377			25435	2992	14678	15095	20242	20242					0.02207451963067797
SYFRLDTPLYF	11	Unmodified	_SYFRLDTPLYF_					0	0	0		ENST00000481465.3_1_1:43215737-43220567:-|nuORF;ENST00000460031.5_1_1:43212370-43220777:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	ENST00000481465.3_1_1:43215737-43220567:-|nuORF	ENST00000481465.3_1_1:43215737-43220567:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.3586276427001	2	711.358628	1420.7027	0.7569	0.00053843	-1.5901	-0.0011312	-0.83324	-0.00059274	711.3573159737457	30.946	0.16894	30.946	30.897	31.066	0	1035	91	0.99917877	0.05482304	0.99917877	404.0896	0	22.17163						401	8	4	NaN	NaN	NaN	0.00024841	1	20227	20227		80.241	48.565	1	75296			25436	2139	14679	15096	20243	20243					0.009179109118122142
SYFRLDTPLYF	11	Unmodified	_SYFRLDTPLYF_					0	0	0		ENST00000481465.3_1_1:43215737-43220567:-|nuORF;ENST00000460031.5_1_1:43212370-43220777:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	ENST00000481465.3_1_1:43215737-43220567:-|nuORF	ENST00000481465.3_1_1:43215737-43220567:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3586276427001	2	711.358628	1420.7027	1.067	0.00075903	-1.5479	-0.0011011	-0.48093	-0.00034211	711.3573838060834	30.969	0.19309	30.964	30.891	31.084	-0.0050716	1035	88	0.99917877	0.05299276	0.9976593	404.0896	0	21.431427						482	9	4	NaN	NaN	NaN	0.12578	1	19262	19262		37.231	16.782	1	86919			25437	2139	14679	15096	20244	20244					0.009179109118122142
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.77419952155	2	508.7742	1015.53385	1.862	0.00094733	-2.1872	-0.0011128	-0.32522	-0.00016547	508.7734386425799	27.374	0.26552	27.374	27.277	27.543	0	1275	97	0.85233563	0.059016943	0.85233563	346.0257	0	23.95929						532	12	5	NaN	NaN	NaN	0.062072	1	9202	9202		41.785	16.823	1	167550			25438	935	14680	15097	20245	20245					0.02670054068948957
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5411225765	1	1016.54112	1015.53385	1.9941	0.002027	-1.547	-0.0015725	0.4471	0.00045449	1016.5413741490763	27.374	0.072428	27.374	27.35	27.422	0	156	49	1.5263584	0.028340816	1.5263584	309.83463	0	5.752899						91	4	2	NaN	NaN	NaN	0.012648	1	9204	9204		84.879	40.576	1	11403			25439	935	14680	15097	20246	20246					0.02670054068948957
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.77419952155	2	508.7742	1015.53385	1.1792	0.00059992	-1.7752	-0.00090315	-0.596	-0.00030323	508.7736560194522	27.397	0.24135	27.387	27.315	27.556	-0.010126	1278	97	0.85049206	0.059010506	0.8489726	345.27725	0	23.956726						524	11	5	NaN	NaN	NaN	0.023074	1	9028	9028		68.108	18.275	1	165060			25440	935	14680	15097	20247	20247					0.02670054068948957
SYGDILHVI	9	Unmodified						0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1016.54112	1015.53385	1.6285	0.0016554	-1.5608	-0.0015866	0.067733	6.8853E-05	1016.5413730867299	27.397	0.072412	27.387	27.363	27.436	-0.010126	159	43	1.5245869	0.024795532	1.5230675	309.47507		5.033264	0.0066346	-7.9828E-06	-0.0016454	NaN	84.879	102	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9070.4			25441	935	14680	15097							0.02670054068948957
SYGIVLYEL	9	Unmodified	_SYGIVLYEL_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5611893166	1	1056.56119	1055.55391	1.6249	0.0017168	-0.27052	-0.00028583	1.3544	0.001431	1056.5612288480256	32.177	0.12066	32.177	32.152	32.273	0	75	73	1.5741152	0.04240787	1.5741152	319.36642	0	8.603973						152	6	2	NaN	NaN	NaN	0.030669	1	10900	10900		58.235	25.783	1	16152			25442	2742	14681	15098	20248	20248					0.0283580500890821
SYGIVLYEL	9	Unmodified	_SYGIVLYEL_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	1.0315	0.0010899	0.26193	0.00027675	1.2935	0.0013666	1056.5613748137214	32.175	0.12064	32.172	32.148	32.268	-0.0037613	75	58	1.5741152	0.03356397	1.5725957	319.36642	0	6.809662						141	6	2	NaN	NaN	NaN	0.011942	1	10675	10675		87.021	34.397	1	15165			25443	2742	14681	15098	20249	20249					0.0283580500890821
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.80804233889995	2	510.808042	1019.60153	2.3014	0.0011756	-0.56553	-0.00028888	1.7358	0.00088668	510.8081168612543	25.443	0.14477	25.443	25.419	25.564	0	1239	49	0.87444305	0.02945745	0.87444305	354.98178	0	11.958313						246	7	4	NaN	NaN	NaN	0.01452	1	9366	9366		79.199	18.217	1	80375			25444	1863	14682	15099	20250	20250					0.09251503999746546
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.80804233889995	2	510.808042	1019.60153	1.7466	0.00089218	0.056925	2.9078E-05	1.8035	0.00092126	510.8080378219799	25.467	0.16893	25.455	25.431	25.6	-0.012011	1239	55	0.87444305	0.0331468	0.8729236	354.98178	0	13.455994						246	8	3	NaN	NaN	NaN	0.02857	1	9175	9175		60.982	15.817	1	76096			25445	1863	14682	15099	20251	20251					0.09251503999746546
SYGPITVYF	9	Unmodified	_SYGPITVYF_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5193245018997	1	1046.51932	1045.51205	1.2551	0.0013135	-1.1087	-0.0011603	0.14636	0.00015317	1046.5176026694687	31.163	0.096533	31.163	31.139	31.235	0	138	127	1.5369828	0.074418545	1.5369828	311.87143	0	15.100372						277	5	3	NaN	NaN	NaN	0.025843	1	10441	10441		64.55	27.963	1	45146			25446	5586	14683	15100	20252	20252					-0.008887506796327216
SYGPITVYF	9	Unmodified	_SYGPITVYF_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5193245018997	1	1046.51932	1045.51205	1.235	0.0012925	-0.18817	-0.00019692	1.0468	0.0010955	1046.5173159015333	31.162	0.096495	31.157	31.109	31.205	-0.0050716	138	130	1.5369828	0.0761863	1.5354633	311.87143	0	15.459076						279	5	3	NaN	NaN	NaN	0.016254	1	10231	10231		76.739	34.955	1	45585			25447	5586	14683	15100	20253	20253					-0.008887506796327216
SYGPVAYHL	9	Unmodified	_SYGPVAYHL_					0	0	0		nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.7532671141999	2	503.753267	1005.49198	1.3682	0.00068922	-0.49799	-0.00025086	0.87019	0.00043836	503.75342286795103	21.007	0.12028	21.007	20.983	21.103	0	1260	43	0.8615505	0.025797546	0.8615505	349.8134	0	10.474518						113	6	3	NaN	NaN	NaN	0.19345	1	8791	8791		25.752	0.79079	1	13535			25448	1310	14684	15101	20254	20254					-0.010545016195919743
SYGPVAYHL	9	Unmodified	_SYGPVAYHL_					0	0	0		nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7532671141999	2	503.753267	1005.49198	0.91561	0.00046124	0.57825	0.00029129	1.4939	0.00075254	503.75319113231035	21.031	0.096319	21.017	20.969	21.065	-0.014086	1266	43	0.85786515	0.025800347	0.8563457	348.31702	0	10.4756775						126	5	3	NaN	NaN	NaN	0.26823	1	8619	8619		20.952	8.3646	1	14004			25449	1310	14684	15101	20255	20255					-0.010545016195919743
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.26346765975	2	486.263468	970.512382	1.3537	0.00065823	-2.8751	-0.0013981	-1.5215	-0.00073983	486.26263980701947	22.428	0.096191	22.414	22.366	22.462	-0.013731	1359	67	0.8006399	0.04065764	0.7991205	325.2401	0	16.516174						149	5	3	NaN	NaN	NaN	0.19268	1	7477	7477		25.801	1.9505	1	16226			25450	1469	14685	15102	20256	20256					0.025946690402406603
SYGSVFKAI	9	Unmodified						0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.263468	970.512382	1.8206	0.00088531	-3.8403	-0.0018674	-2.0197	-0.00098211	486.2606350235519	22.405	0.0963	22.405	22.38	22.477	0	1359	70	0.8006399	0.042508066	0.8006399	325.24014		17.267822	-0.0048326	-0.00048836	0.00075972	NaN	25.801	150	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16457			25451	1469	14685	15102							0.025946690402406603
SYGTVSQIF	9	Unmodified	_SYGTVSQIF_					0	0	0		nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4938380329002	1	1001.49384	1000.48656	2.1864	0.0021897	-0.81985	-0.00082107	1.3666	0.0013686	1002.4970558362426	26.215	0.048275	26.204	26.18	26.228	-0.011137	222	58	1.4873441	0.033738732	1.4858247	301.97598	0	6.850006						83	3	3	NaN	NaN	NaN	0.042816	1	8435	8435		49.961	26.627	1	7607.3			25452	6133	14686	15103	20257	20257					-0.013662252020367305
SYGVVQLF	8	Unmodified	_SYGVVQLF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.4825450651001	1	912.482545	911.475269	1.735	0.0015831	-0.70382	-0.00064222	1.0311	0.0009409	912.4822515127756	30.415	0.16893	30.415	30.366	30.535	0	306	79	1.4375578	0.04631865	1.4375578	292.25494	0	9.416595						282	8	3	NaN	NaN	NaN	0.098732	1	6249	6249		64.55	33.759	1	40834			25453	4564	14687	15104	20258	20258					0.015989974944773166
SYGVVQLF	8	Unmodified	_SYGVVQLF_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4825450651001	1	912.482545	911.475269	1.3011	0.0011872	-0.033021	-3.0131E-05	1.2681	0.0011571	912.4826447945552	30.414	0.2172	30.407	30.311	30.528	-0.0064106	306	85	1.4375578	0.049886942	1.4360384	292.25494	0	10.142029						260	10	2	NaN	NaN	NaN	0.49126	1	6131	6131		31.561	13.781	1	42149			25454	4564	14687	15104	20259	20259					0.015989974944773166
SYGYIGISIM	10	Unmodified	_SYGYIGISIM_					0	0	0		ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5441590439	1	1103.54416	1102.53688	1.2522	0.0013818	-2.8777	-0.0031756	-1.6255	-0.0017938	1103.5405812490478	30.028	0.072393	30.021	29.973	30.045	-0.0064106	72	79	1.5758814	0.045936942	1.5743619	319.54892	0	9.31488						165	4	3	NaN	NaN	NaN	0.37681	1	12603	12603		24.562	2.727	1	17741			25455	5028	14688	15105	20260	20260					-0.010284388685477097
SYHNEDEDTD	10	Unmodified	_SYHNEDEDTD_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|19|2|sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|19|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.7180038199	2	612.718004	1223.42145	1.3944	0.0008544	7.8689	0.0048214	9.2634	0.0056758	612.7234948404738	17.906	0.11996	17.892	17.868	17.988	-0.013786	1215	49	0.8891654	0.029425621	0.88764596	360.15625	0	11.918823						188	6	4	NaN	NaN	NaN	0.72369	1	16358	16358		6.4299	1.2411	1	18208	+		25456	13042	14689	15106	20261	20261					-0.18131916256515979
SYHNEDEDTD	10	Unmodified						0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|19|2|sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|19|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.718004	1223.42145	1.3944	0.0008544	7.8689	0.0048214	9.2634	0.0056758	612.7234948404738	17.906	0.11996	17.892	17.868	17.988	-0.013786	1215	49	0.8891654	0.029425621	0.88764596	360.15625		11.918823	0.0035307	-0.00054841	-0.00075972	NaN	6.4299	188	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18208	+		25457	13042	14689	15106							-0.18131916256515979
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.7971433016	2	495.797143	989.579734	1.5513	0.00076912	-1.4151	-0.0007016	0.13619	6.7523E-05	495.796669998115	34.421	0.096432	34.421	34.372	34.469	0	1284	49	0.8468043	0.029498875	0.8468043	343.90063	0	11.97995						144	5	3	NaN	NaN	NaN	0.032764	1	8214	8214		55.494	25.895	1	20796			25458	1423	14690	15107	20262	20262					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5870101366	1	990.58701	989.579734	1.3756	0.0013626	-0.15151	-0.00015008	1.224	0.0012125	990.587356678713	35.023	0.12053	35.023	34.927	35.048	0	150	49	1.5299006	0.028334856	1.5299006	310.66275	0	5.7536926						111	6	2	NaN	NaN	NaN	0.032764	1	8215	8215		55.494	23.933	1	10840			25459	1423	14690	15107	20263	20263					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5870101366	1	990.58701	989.579734	2.5792	0.0025549	0.72688	0.00072004	3.3061	0.003275	990.5879241100656	34.421	0.31364	34.421	34.372	34.686	0	144	214	1.533442	0.12596989	1.533442	311.3819	0	25.579529						969	14	5	NaN	NaN	NaN	6.3027E-18	1	8216	8216		158.11	93.564	1	733050			25460	1423	14690	15107	20264	20264					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.7971433016	2	495.797143	989.579734	0.78035	0.00038689	-1.4721	-0.00072985	-0.69172	-0.00034295	495.7968683678745	34.395	0.096405	34.395	34.37	34.467	-0.0006485	1278	52	0.85049206	0.0313375	0.8489726	345.3983	0	12.726624						158	5	3	NaN	NaN	NaN	0.043119	1	8043	8043		49.833	22.044	1	19584			25461	1423	14690	15107	20265	20265					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5870101366	1	990.58701	989.579734	1.3107	0.0012984	0.21692	0.00021488	1.5277	0.0015133	990.5866167186769	35.094	0.19309	35.094	35.022	35.215	-4.5776E-05	147	49	1.5316714	0.028334856	1.530152	311.02234	0	5.7536926						166	9	2	NaN	NaN	NaN	0.47587	1	8044	8044		10.605	3.0646	1	16254			25462	1423	14690	15107	20266	20266					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5870101366	1	990.58701	989.579734	2.1574	0.0021371	0.58828	0.00058275	2.7457	0.0027199	990.587914260497	34.395	0.3134	34.395	34.346	34.66	-0.0006485	144	208	1.533442	0.12240839	1.5319226	311.3819	0	24.856354						992	14	5	NaN	NaN	NaN	8.9003E-19	1	8045	8045		165.46	84.817	1	733110			25463	1423	14690	15107	20267	20267					0.0845269925117691
SYIALPLTL	9	Unmodified						0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	990.58701	989.579734	1.899	0.0018811	0.59305	0.00058747	2.492	0.0024686	990.5874563788802	35.263	0.072445	35.263	35.263	35.336	-4.5776E-05	147	34	1.5316714	0.019481182	1.530152	311.02234		3.9558716	0.11993	0.00033266	0.0001257	NaN	55.494	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3138.4			25464	1423	14690	15107							0.0845269925117691
SYIAPIILV	9	Unmodified	_SYIAPIILV_					0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.6077455787001	1	988.607746	987.600469	1.5684	0.0015505	0.947	0.00093621	2.5154	0.0024867	988.6100815263711	34.395	0.048153	34.395	34.37	34.419	-0.0006485	174	46	1.5157272	0.026585102	1.5142077	307.79315	0	5.398529						76	3	2	NaN	NaN	NaN	0.20577	1	7983	7983		24.961	2.8347	1	8746.3	+		25465	10623	14691	15108	20268	20268					0.10617289630852156
SYIAPIILV	9	Unmodified						0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.607746	987.600469	1.9127	0.0018909	-1.4983	-0.0014812	0.41442	0.00040969	988.605947620054	34.396	0.072323	34.396	34.372	34.445	0	177	46	1.5139546	0.026587963	1.5139546	307.43323		5.399109	0.00091922	-0.0011151	-0.00012654	NaN	24.961	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9998.5	+		25466	10623	14691	15108							0.10617289630852156
SYIAPIILV	9	Unmodified						0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	988.607746	987.600469	1.5684	0.0015505	0.947	0.00093621	2.5154	0.0024867	988.6100815263711	34.395	0.048153	34.395	34.37	34.419	-0.0006485	174	46	1.5157272	0.026585102	1.5142077	307.79315		5.398529	-0.00091922	0.0013023	0.00012654	NaN	24.961	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8746.3	+		25467	10623	14691	15108							0.10617289630852156
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.8138559983001	2	577.813856	1153.61316	1.9075	0.0011022	-2.5856	-0.001494	-0.67806	-0.00039179	577.8126840264414	29.618	0.26547	29.618	29.546	29.811	0	1185	61	0.90755045	0.03675419	0.90755045	367.85123	0	14.897339						406	12	4	NaN	NaN	NaN	0.00065562	1	14934	14934		115.07	81.645	1	160470			25468	2540	14692	15109	20269	20269					0.04249701023104535
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8138559983001	2	577.813856	1153.61316	1.3103	0.00075709	-0.82027	-0.00047396	0.48999	0.00028313	577.8136620008893	29.618	0.21715	29.61	29.562	29.779	-0.0070648	1185	64	0.90755045	0.038594007	0.906031	367.85123	0	15.643066						396	10	4	NaN	NaN	NaN	0.0052656	1	14447	14447		102.05	41.065	1	152310			25469	2540	14692	15109	20270	20270					0.04249701023104535
SYIDMDKELEF	11	Oxidation (M)	_SYIDM(Oxidation (M))DKELEF_		SYIDM(1)DKELEF		SYIDM(49)DKELEF	0	0	1		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3132254735499	2	703.313225	1404.6119	1.0037	0.00070594	-0.26641	-0.00018737	0.73732	0.00051857	703.8136780320987	24.068	0.14474	24.068	23.995	24.14	0	1077	55	0.9735726	0.03293997	0.9735726	393.77737	0	13.32309						157	7	3	NaN	NaN	NaN	0.051747	1	20100	20100		49.394	27.544	1	16797			25470	3935	14693	15110	20271	20271		425			-0.07422345918666906
SYIDMDKELEF	11	Unmodified	_SYIDMDKELEF_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3157681624999	2	695.315768	1388.61698	0.79123	0.00055016	-1.3532	-0.0009409	-0.56197	-0.00039075	695.3145689677247	27.18	0.096554	27.17	27.146	27.242	-0.010124	1089	55	0.96624947	0.032954156	0.96473	390.8593	0	13.330353						210	5	4	NaN	NaN	NaN	0.048526	1	19035	19035		50.211	16.304	1	22554			25471	3935	14693	15111	20272	20272					-0.06178042056035338
SYIDRLISVF	10	Unmodified	_SYIDRLISVF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.83478840565	2	606.834788	1211.65502	0.32935	0.00019986	-3.4999	-0.0021238	-3.1705	-0.001924	606.8321398448212	32.127	0.14477	32.123	32.075	32.22	-0.0037575	1152	79	0.92775106	0.04774952	0.9262317	375.82614	0	19.343048						180	7	3	NaN	NaN	NaN	0.2504	1	16099	16099		31.198	9.363	1	18959			25472	5616	14694	15112	20273	20273					0.05766256711604001
SYIDSLLFL	9	Unmodified	_SYIDSLLFL_					0	0	0		nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	nc|ENSG00000155313|Q9UHP3|USP25	nc|ENSG00000155313|Q9UHP3|USP25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5768393808	1	1070.57684	1069.56956	1.145	0.0012258	1.1786	0.0012618	2.3236	0.0024876	1071.5824207252508	38.324	0.072109	38.324	38.299	38.372	0	57	31	1.5847093	0.017653108	1.5847093	321.46146	0	3.5809631						46	4	2	NaN	NaN	NaN	0.056143	1	11557	11557		44.302	7.7159	1	2490.4			25473	3873	14695	15113	20274	20274					0.03756091525951888
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.29222509920004	2	504.292225	1006.5699	2.0017	0.0010095	-2.3638	-0.001192	-0.36204	-0.00018257	504.2912404908291	25.226	0.21713	25.226	25.129	25.346	0	1278	67	0.85049206	0.040574074	0.85049206	345.31836	0	16.473969						273	10	4	NaN	NaN	NaN	0.01966	1	8854	8854		72.428	25.293	1	105630			25474	1007	14696	15114	20275	20275					0.06687511245809219
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5771737318001	1	1007.57717	1006.5699	2.2923	0.0023097	-1.1768	-0.0011857	1.1155	0.0011239	1007.575216585158	25.25	0.048227	25.238	25.214	25.262	-0.012011	117	46	1.5493695	0.026531577	1.54785	314.54315	0	5.386261						67	3	3	NaN	NaN	NaN	0.14787	1	8678	8678		28.896	5.5612	1	4863.7			25475	1007	14696	15114	20276	20276					0.06687511245809219
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.29222509920004	2	504.292225	1006.5699	1.6916	0.00085307	-0.50749	-0.00025592	1.1841	0.00059715	504.2919381922022	25.25	0.14475	25.238	25.165	25.31	-0.012011	1278	61	0.85049206	0.03688556	0.8489726	345.31836	0	14.976349						265	7	5	NaN	NaN	NaN	0.041983	1	8679	8679		50.315	13.729	1	99929			25476	1007	14696	15114	20277	20277					0.06687511245809219
SYIDVAVKL	9	Unmodified						0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.292225	1006.5699	1.6944	0.00085448	-1.0925	-0.00055095	0.60189	0.00030353	504.2918743739386	25.467	0.14475	25.455	25.358	25.503	-0.012011	1278	40	0.85049206	0.023969114	0.8489726	345.31836		9.731995	0.11449	0.0010879	-0.00075972	NaN	72.428	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14019			25477	1007	14696	15114							0.06687511245809219
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5404538745	1	1082.54045	1081.53318	0.99561	0.0010778	0.69025	0.00074722	1.6859	0.001825	1082.5415454805054	33.214	0.21719	33.214	33.166	33.383	0	120	139	1.5476005	0.0813334	1.5476005	313.88962	0	16.496338						592	10	3	NaN	NaN	NaN	0.0062755	1	12051	12051		99.986	41.387	1	108770			25478	1581	14697	15115	20278	20278					-0.004327853707536633
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5404538745	1	1082.54045	1081.53318	1.2258	0.001327	0.25487	0.0002759	1.4807	0.0016029	1082.540716020159	33.213	0.16892	33.21	33.162	33.331	-0.0024757	117	115	1.5493695	0.06716001	1.54785	314.2484	0	13.621613						586	8	4	NaN	NaN	NaN	0.013281	1	11733	11733		82.96	38.322	1	103010			25479	1581	14697	15115	20279	20279					-0.004327853707536633
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7925892399501	2	575.792589	1149.57063	1.572	0.00090515	-2.6998	-0.0015545	-1.1278	-0.00064939	575.7911032333054	28.991	0.16897	28.991	28.918	29.087	0	1191	70	0.90387505	0.042283356	0.90387505	366.3767	0	17.13913						236	8	4	NaN	NaN	NaN	0.021751	1	14783	14783		69.782	40.184	1	50793			25480	4168	14698	15116	20280	20280					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7925892399501	2	575.792589	1149.57063	1.8242	0.0010504	-2.8457	-0.0016386	-1.0215	-0.00058818	575.7912721826724	29.715	0.12066	29.715	29.691	29.811	0	1197	88	0.9001988	0.053325295	0.9001988	364.8866	0	21.614899						355	6	3	NaN	NaN	NaN	0.030669	1	14784	14784		58.235	34.901	1	86218			25481	4168	14698	15116	20281	20281					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1150.5779020133	1	1150.5779	1149.57063	2.6652	0.0030665	-2.2505	-0.0025893	0.41476	0.00047721	1150.5756197162298	28.653	0.048225	28.653	28.653	28.701	0	66	70	1.579413	0.04062581	1.579413	320.10297	0	8.233704						85	3	2	NaN	NaN	NaN	0.33629	1	14785	14785		16.584	1.4088	1	7924.1			25482	4168	14698	15116	20282	20282					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7925892399501	2	575.792589	1149.57063	2.4163	0.0013913	0.41238	0.00023745	2.8287	0.0016287	575.7924525662452	28.653	0.33784	28.653	28.605	28.943	0	1188	190	0.90571284	0.11598271	0.90571284	367.12164	0	47.01245						1274	15	6	NaN	NaN	NaN	1.2958E-07	1	14786	14786		136.74	78.14	1	2216000			25483	4168	14698	15116	20283	20283					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7925892399501	2	575.792589	1149.57063	1.0982	0.00063232	-3.3349	-0.0019202	-2.2367	-0.0012879	575.790510101599	28.99	0.12066	28.982	28.982	29.103	-0.0077229	1191	85	0.90387505	0.051461518	0.9023556	366.3767	0	20.859406						241	6	2	NaN	NaN	NaN	0.074859	1	14279	14279		39.459	24.605	1	79271			25484	4168	14698	15116	20284	20284					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7925892399501	2	575.792589	1149.57063	1.221	0.00070302	-1.5058	-0.00086701	-0.28481	-0.00016399	575.7917203033804	29.738	0.2654	29.731	29.61	29.876	-0.0070648	1191	91	0.90387505	0.05516112	0.9023556	366.3767	0	22.35904						616	12	4	NaN	NaN	NaN	0.062072	1	14281	14281		41.785	5.5497	1	161970			25485	4168	14698	15116	20285	20285					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7925892399501	2	575.792589	1149.57063	1.1543	0.00066464	-0.7489	-0.00043121	0.40541	0.00023343	575.7916952987612	29.569	0.19303	29.562	29.393	29.586	-0.0070667	1188	76	0.90571284	0.04595518	0.9041934	367.12164	0	18.627472						415	9	3	NaN	NaN	NaN	0.042816	1	14282	14282		49.961	22.172	1	113200			25486	4168	14698	15116	20286	20286					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7925892399501	2	575.792589	1149.57063	2.1628	0.0012453	-0.24102	-0.00013878	1.9218	0.0011065	575.7920259450946	28.701	0.36197	28.692	28.572	28.933	-0.0083504	1188	145	0.90571284	0.08830559	0.9041934	367.12164	0	35.793793						1497	16	6	NaN	NaN	NaN	5.3062E-26	1	14283	14283		173.48	92.842	1	2600500			25487	4168	14698	15116	20287	20287					0.0018230589485028759
SYIEHIFEI	9	Unmodified						0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.792589	1149.57063	1.449	0.0008343	3.2461	0.0018691	4.6951	0.0027034	575.7940375860841	29.184	0.096539	29.184	29.136	29.232	0	1191	91	0.90387505	0.05516708	0.90387505	366.37668		22.36145	-0.18911	0.0040869	-0.00015919	NaN	49.961	191	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24868			25488	4168	14698	15116							0.0018230589485028759
SYIEKGLFKF	10	Unmodified	_SYIEKGLFKF_					0	0	0		ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.33970660805	2	616.339707	1230.66486	1.2626	0.0007782	-2.477	-0.0015267	-1.2144	-0.00074846	616.3385748439794	23.61	0.072308	23.61	23.586	23.658	0	1101	34	0.95892316	0.020150542	0.95892316	388.38617	0	8.161438						63	4	2	NaN	NaN	NaN	0.64611	1	17281	17281		11.739	2.1272	1	6667.3			25489	5374	14699	15117	20288	20288					0.058754447169803825
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5611893166	1	1068.56119	1067.55391	1.5195	0.0016237	-0.38359	-0.00040989	1.136	0.0012138	1068.5609487642312	32.177	0.21715	32.177	32.056	32.273	0	66	106	1.579413	0.061848044	1.579413	320.39484	0	12.546295						439	10	3	NaN	NaN	NaN	0.0047854	1	11450	11450		103.03	47.532	1	50089			25490	4141	14700	15118	20289	20289					0.02283805008892159
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5611893166	1	1068.56119	1067.55391	0.59837	0.0006394	0.81899	0.00087514	1.4174	0.0015145	1068.5620633894712	32.175	0.21717	32.172	32.027	32.244	-0.0037613	60	112	1.582944	0.06538224	1.5814246	321.1111	0	13.263245						471	10	3	NaN	NaN	NaN	0.012648	1	11183	11183		84.879	37.839	1	52916			25491	4141	14700	15118	20290	20290					0.02283805008892159
SYIGLPLTL	9	Unmodified	_SYIGLPLTL_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1;NPC1-ANKRD29|1|fusion	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5713600724001	1	976.57136	975.564084	1.3618	0.0013299	0.95085	0.00092857	2.3126	0.0022584	976.5727578215499	34.107	0.12067	34.107	34.059	34.179	0	183	91	1.510409	0.05322385	1.510409	306.7653	0	10.809814						181	6	2	NaN	NaN	NaN	0.011206	1	7776	7776		89.256	36.632	1	33940			25492	3322	14701	15119	20291	20291					0.075324127341446
SYIGLPLTL	9	Unmodified	_SYIGLPLTL_					0	0	0		ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1;NPC1-ANKRD29|1|fusion	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENST00000540608.5_1_18:21119776-21166285:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5713600724001	1	976.57136	975.564084	1.309	0.0012783	0.71071	0.00069406	2.0197	0.0019724	976.5718798888246	34.082	0.16899	34.08	34.056	34.225	-0.0012474	183	88	1.510409	0.05144143	1.5088896	306.7653	0	10.447784						244	8	3	NaN	NaN	NaN	0.01452	1	7620	7620		79.199	32.063	1	34191			25493	3322	14701	15119	20292	20292					0.075324127341446
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3243908948501	2	599.324391	1196.63423	1.387	0.00083128	-2.0119	-0.0012058	-0.62483	-0.00037447	599.3232275542714	23.971	0.24128	23.971	23.923	24.164	0	1116	43	0.94976085	0.025661409	0.94976085	384.79654	0	10.396759						299	11	4	NaN	NaN	NaN	0.030545	1	16363	16363		58.235	36.4	1	73848			25494	2092	14702	15120	20293	20293					0.0437771112262908
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.88535275210006	3	399.885353	1196.63423	1.3583	0.00054317	-2.7434	-0.001097	-1.3851	-0.00055386	399.8844361769823	24.212	0.43437	24.199	24.055	24.489	-0.012749	1359	49	0.8006399	0.029588401	0.7991205	486.56543	0	17.981506						295	19	2	NaN	NaN	NaN	0.16939	1	15720	15720		27.296	12.871	1	66072			25495	2092	14702	15120	20294	20294					0.0437771112262908
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.3243908948501	2	599.324391	1196.63423	1.0256	0.00061465	-1.3604	-0.0008153	-0.33481	-0.00020066	599.3238458935557	24.188	0.14475	24.175	24.055	24.199	-0.012749	1122	61	0.9460945	0.03667897	0.9445751	383.31113	0	14.860535						147	7	2	NaN	NaN	NaN	0.12104	1	15721	15721		30.61	15.147	1	34253			25496	2092	14702	15120	20295	20295					0.0437771112262908
SYIHYVFRL	9	Unmodified						0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	599.324391	1196.63423	0.97588	0.00058487	-2.2108	-0.001325	-1.2349	-0.00074012	599.3234287652502	24.26	0.14483	24.248	24.224	24.368	-0.012749	1116	61	0.94976085	0.036671042	0.9482414	384.79654		14.8573	0.13827	-0.00017216	-0.00075972	NaN	58.235	128	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32296			25497	2092	14702	15120							0.0437771112262908
SYIKQHQKT	9	Unmodified	_SYIKQHQKT_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.2084954697999	3	378.208495	1131.60366	1.3546	0.00051233	1.1535	0.00043626	2.5081	0.00094859	378.2086844317676	21.296	0.16846	21.296	21.224	21.392	0	1491	37	0.7190863	0.022297442	0.7190863	437.28925	0	13.559479						141	8	3	NaN	NaN	NaN	0.12104	1	14154	14154		32.778	0	1	15692	+		25498	11114	14703	15121	20296	20296					0.043119327375507055
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5768393808	1	1070.57684	1069.56956	1.306	0.0013981	-0.71734	-0.00076797	0.58861	0.00063016	1070.5773512411238	35.578	0.14464	35.578	35.53	35.675	0	60	163	1.582944	0.09549868	1.582944	321.1034	0	19.3721						464	7	4	NaN	NaN	NaN	0.030391	1	11555	11555		58.599	5.8409	1	74124			25499	1548	14704	15122	20297	20297					0.03756091525951888
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	TNPO2|p.F527L|1|0.11|ENSG00000105576|chr19:12706285-12706285|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5768393808	1	1070.57684	1069.56956	0.59484	0.00063682	0.64795	0.00069368	1.2428	0.0013305	1070.5778285755805	35.553	0.16886	35.553	35.505	35.674	0.00052643	57	106	1.5847093	0.06183505	1.5831898	321.46146	0	12.5433655						342	8	3	NaN	NaN	NaN	0.023074	1	11266	11266		68.108	33.67	1	66736			25500	1548	14704	15122	20298	20298					0.03756091525951888
SYILQKSTF	9	Unmodified	_SYILQKSTF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7951319289	2	543.795132	1085.57571	1.1972	0.00065104	-4.6626	-0.0025355	-3.4654	-0.0018845	543.7930348691584	20.597	0.19253	20.597	20.501	20.694	0	1248	52	0.8689189	0.031306982	0.8689189	352.45358	0	12.698853						158	9	3	NaN	NaN	NaN	0.42817	1	12204	12204		12.57	1.0213	1	15645			25501	3224	14705	15123	20299	20299					0.036346097574551095
SYILQKSTF	9	Unmodified	_SYILQKSTF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7951319289	2	543.795132	1085.57571	1.2264	0.0006669	-0.42948	-0.00023355	0.7969	0.00043335	543.7945986186619	20.598	0.1205	20.584	20.535	20.656	-0.014088	1248	40	0.8689189	0.023945808	0.86739945	352.45358	0	9.712982						124	6	3	NaN	NaN	NaN	0.19268	1	11897	11897		25.801	2.6834	1	12826			25502	3224	14705	15123	20300	20300					0.036346097574551095
SYINPDHLKYF	11	Unmodified	_SYINPDHLKYF_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.84842709715	2	698.848427	1395.6823	1.3233	0.00092476	-1.5785	-0.0011031	-0.25523	-0.00017837	698.848634719564	22.139	0.048277	22.139	22.115	22.163	0	1053	40	0.9882094	0.023775876	0.9882094	399.7224	0	9.617126						49	3	2	NaN	NaN	NaN	0.41324	1	20025	20025		23.177	9.2278	1	5760.1			25503	887	14706	15124	20301	20301					0.0002874025196888397
SYINPDHLKYF	11	Unmodified	_SYINPDHLKYF_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.84842709715	2	698.848427	1395.6823	1.2035	0.00084105	-1.2936	-0.000904	-0.090079	-6.2951E-05	699.3483762917141	22.211	0.04825	22.197	22.173	22.222	-0.013731	1053	31	0.9882094	0.018288136	0.98669	399.7224	0	7.3974						55	3	2	NaN	NaN	NaN	0.65737	1	19089	19089		17.582	11.152	1	4434.4			25504	887	14706	15124	20302	20302					0.0002874025196888397
SYINRFMT	8	Unmodified	_SYINRFMT_					0	0	0		ENSG00000153814|ENST00000283928|JAZF1	ENSG00000153814|ENST00000283928|JAZF1	ENSG00000153814|ENST00000283928|JAZF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1031.4978775533	1	1031.49788	1030.4906	1.2338	0.0012726	-9.6834	-0.0099885	-8.4497	-0.0087158	1031.487464126015	34.781	0.14456	34.78	34.732	34.877	-0.0006485	168	58	1.5192716	0.033667326	1.5177522	308.33618	0	6.832794						162	7	2	NaN	NaN	NaN	0.76406	1	9589	9589		14.042	2.4931	1	21313			25505	3815	14707	15125	20303	20303					-0.02342458979978801
SYINYVITM	9	Unmodified	_SYINYVITM_					0	0	0		ENST00000478884.5_1_2:203881095-203927086:+|nuORF;NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	ENST00000478884.5_1_2:203881095-203927086:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5441590438998	1	1103.54416	1102.53688	1.9218	0.0021208	-3.6261	-0.0040016	-1.7043	-0.0018808	1103.538985806917	30.029	0.072397	30.029	29.98	30.053	0	69	82	1.5776473	0.047711372	1.5776473	319.907	0	9.674683						144	4	2	NaN	NaN	NaN	0.013093	1	12937	12937		83.529	16.374	1	18929			25506	3474	14708	15126	20304	20304					-0.01028438868570447
SYIPDFLTL	9	Unmodified	_SYIPDFLTL_					0	0	0		ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5611893166	1	1068.56119	1067.55391	0.63451	0.00067801	-0.079285	-8.4721E-05	0.55523	0.00059329	1068.5596699986181	35.746	0.14458	35.746	35.698	35.843	0.00053024	78	88	1.5723488	0.051251054	1.5708294	318.9618	0	10.396606						280	7	3	NaN	NaN	NaN	0.16171	1	11181	11181		27.789	2.8278	1	23742			25507	2486	14709	15127	20305	20305					0.02283805008892159
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3025928202501	2	539.302593	1076.59063	1.6839	0.00090813	-2.4349	-0.0013131	-0.751	-0.00040502	539.3014564973132	34.71	0.24123	34.71	34.638	34.879	0	1227	91	0.88180584	0.055226803	0.88180584	357.71823	0	22.403595						402	11	4	NaN	NaN	NaN	0.032826	1	11841	11841		55.413	0	1	72437			25508	4441	14710	15128	20306	20306					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5979091739	1	1077.59791	1076.59063	0.68674	0.00074003	-0.90419	-0.00097435	-0.21745	-0.00023433	1077.5973917853307	35.337	0.14476	35.337	35.289	35.434	0	78	85	1.5723488	0.049470544	1.5723488	318.92764	0	10.034363						332	7	3	NaN	NaN	NaN	0.030669	1	11843	11843		58.235	0	1	38295			25509	4441	14710	15128	20307	20307					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5979091739	1	1077.59791	1076.59063	1.6011	0.0017253	-0.27681	-0.00029828	1.3243	0.0014271	1077.5975573300345	34.71	0.21711	34.71	34.638	34.855	0	99	112	1.5599792	0.0654099	1.5599792	316.41864	0	13.267426						622	10	4	NaN	NaN	NaN	0.0084155	1	11844	11844		95.62	0	1	149940			25510	4441	14710	15128	20308	20308					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3025928202501	2	539.302593	1076.59063	1.2317	0.00066426	-0.89051	-0.00048026	0.34119	0.000184	539.3020339198989	34.709	0.19281	34.708	34.636	34.828	-0.00064468	1227	88	0.88180584	0.05337721	0.8802864	357.71823	0	21.65329						383	9	3	NaN	NaN	NaN	0.0094682	1	11529	11529		93.472	0	1	80458			25511	4441	14710	15128	20309	20309					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5979091739	1	1077.59791	1076.59063	1.2083	0.0013021	-0.48865	-0.00052657	0.71965	0.00077549	1077.597711317216	35.336	0.19291	35.336	35.287	35.48	-4.5776E-05	75	76	1.5741152	0.044167757	1.5725957	319.28592	0	8.958771						382	9	3	NaN	NaN	NaN	0.032826	1	11530	11530		55.413	0	1	40566			25512	4441	14710	15128	20310	20310					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3025928202501	2	539.302593	1076.59063	0.68515	0.0003695	0.066666	3.5953E-05	0.75182	0.00040546	539.3028247236073	35.336	0.12061	35.336	35.287	35.408	-4.5776E-05	1224	79	0.883646	0.047852874	0.88212657	358.46472	0	19.412231						172	6	2	NaN	NaN	NaN	0.062072	1	11531	11531		41.785	0	1	17253			25513	4441	14710	15128	20311	20311					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5979091739	1	1077.59791	1076.59063	1.9002	0.0020476	-0.61211	-0.00065961	1.2881	0.001388	1077.5979439760347	34.709	0.21691	34.708	34.636	34.853	-0.00064468	96	106	1.5617468	0.061867714	1.5602274	316.7772	0	12.54895						628	10	4	NaN	NaN	NaN	0.0012818	1	11532	11532		113.18	0	1	152870			25514	4441	14710	15128	20312	20312					0.0554010162547911
SYIPLFPQLYF	11	Unmodified	_SYIPLFPQLYF_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	694.3684640475001	2	694.368464	1386.72238	0.7965	0.00055306	-4.0787	-0.0028321	-3.2822	-0.002279	694.3658364813765	40.753	0.071987	40.753	40.729	40.801	0	1059	55	0.98455137	0.032932818	0.98455137	398.26804	0	13.321899						92	4	2	NaN	NaN	NaN	0.37105	1	19948	19948		23.086	0	1	6015.6			25515	4441	14711	15129	20313	20313					0.044482869225703325
SYIPLFPQLYF	11	Unmodified	_SYIPLFPQLYF_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	694.3684640475001	2	694.368464	1386.72238	0.95404	0.00066246	-4.549	-0.0031587	-3.5949	-0.0024962	694.3653577708994	40.727	0.071983	40.733	40.685	40.757	0.0067558	1083	64	0.9699114	0.038423777	0.96839195	392.34592	0	15.54306						95	4	2	NaN	NaN	NaN	0.26275	1	19021	19021		26.96	0	1	6984.6			25516	4441	14711	15129	20314	20314					0.044482869225703325
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5349745661	1	1060.53497	1059.5277	0.76258	0.00080874	-1.5565	-0.0016507	-0.79388	-0.00084194	1060.5342140422617	33.527	0.14481	33.525	33.476	33.621	-0.0018501	141	79	1.5352125	0.046019673	1.5336931	311.45856	0	9.336304						205	7	2	NaN	NaN	NaN	0.36492	1	10828	10828		15.175	0.75036	1	19054			25517	3291	14712	15130	20315	20315					0.00031535837410956447
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5349745661	1	1060.53497	1059.5277	1.5122	0.0016037	-0.56949	-0.00060396	0.94267	0.00099974	1060.5342779446157	32.465	0.28959	32.462	32.414	32.703	-0.0031052	144	151	1.533442	0.088537216	1.5319226	311.09937	0	17.962097						735	13	3	NaN	NaN	NaN	0.04947	1	10830	10830		47.136	14.683	1	287450			25518	3291	14712	15130	20316	20316					0.00031535837410956447
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;SAMHD1-YIF1B|1|fusion	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.329673238	2	560.329673	1118.64479	1.7432	0.00097677	-2.3822	-0.0013348	-0.63896	-0.00035803	560.3286892920829	24.864	0.16894	24.864	24.816	24.985	0	1194	61	0.902037	0.036758184	0.902037	365.7515	0	14.904449						304	8	4	NaN	NaN	NaN	0.015029	1	13631	13631		78.289	36.505	1	104640			25519	1317	14713	15131	20317	20317					0.09021693777026485
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;SAMHD1-YIF1B|1|fusion	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.329673238	2	560.329673	1118.64479	1.5268	0.00085553	-1.3942	-0.00078123	0.13259	7.4295E-05	560.3286945319487	24.888	0.1689	24.875	24.827	24.996	-0.012394	1194	55	0.902037	0.03308952	0.9005176	365.75146	0	13.416901						294	8	4	NaN	NaN	NaN	0.03533	1	13225	13225		53.14	15.838	1	102960			25520	1317	14713	15131	20318	20318					0.09021693777026485
SYIRPEDIVNF	11	Unmodified	_SYIRPEDIVNF_					0	0	0		ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A;nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A	ENST00000463015.1_1_1:202977868-202984294:+|nuORF	ENST00000463015.1_1_1:202977868-202984294:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8458844081999	2	676.845884	1351.67722	1.6816	0.0011382	-3.7234	-0.0025202	-2.0418	-0.001382	676.843781192066	26.529	0.16893	26.529	26.456	26.625	0	1104	67	0.9570911	0.040316403	0.9570911	387.25894	0	16.312836						256	8	4	NaN	NaN	NaN	0.01548	1	19568	19568		64.873	29.35	1	84066			25521	4229	14714	15132	20319	20319					0.015444363893493573
SYIRPEDIVNF	11	Unmodified	_SYIRPEDIVNF_					0	0	0		ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A;nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A	ENST00000463015.1_1_1:202977868-202984294:+|nuORF	ENST00000463015.1_1_1:202977868-202984294:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.8458844081999	2	676.845884	1351.67722	1.1294	0.00076443	-2.6956	-0.0018245	-1.5662	-0.0010601	676.8443672048605	26.553	0.19303	26.542	26.446	26.639	-0.010645	1104	67	0.9570911	0.04030335	0.95557165	387.25894	0	16.307556						242	9	4	NaN	NaN	NaN	0.48738	1	18689	18689		18.924	9.3127	1	76684			25522	4229	14714	15132	20320	20320					0.015444363893493573
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2854626996	2	541.285463	1080.55637	2.2142	0.0011985	-1.2847	-0.00069537	0.9295	0.00050312	541.284869935667	16.299	0.31164	16.286	16.238	16.55	-0.012993	1263	49	0.85970795	0.02948296	0.8581885	348.7377	0	11.959656						483	14	4	NaN	NaN	NaN	0.011167	1	11702	11702		89.374	16.945	1	192000			25523	3802	14715	15133	20321	20321					0.01931653466544958
SYITEECLKKL	11	Unmodified	_SYITEECLKKL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.8523208442999	2	663.852321	1325.69009	1.7726	0.0011768	-1.5849	-0.0010521	0.18773	0.00012462	663.8508775511874	21.97	0.26516	21.97	21.85	22.115	0	1074	40	0.9754029	0.023793817	0.9754029	394.74658	0	9.629364						210	12	3	NaN	NaN	NaN	5.899E-05	1	19186	19186		119.59	71.586	1	24108			25524	384	14716	15134	20322	20322					0.040271314572237316
SYITEECLKKL	11	Unmodified	_SYITEECLKKL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.9039727183999	3	442.903973	1325.69009	1.4395	0.00063755	-2.6514	-0.0011743	-1.2119	-0.00053676	442.90271931426616	22.042	0.12035	22.029	21.956	22.077	-0.013731	1407	31	0.77102906	0.018522859	0.7695096	468.05075	0	11.244232						65	6	2	NaN	NaN	NaN	0.57786	1	18331	18331		15.475	5.2618	1	4310.5			25525	384	14716	15134	20323	20323					0.040271314572237316
SYITEECLKKL	11	Unmodified	_SYITEECLKKL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.8523208442999	2	663.852321	1325.69009	1.669	0.001108	-1.9518	-0.0012957	-0.2828	-0.00018774	663.851033471453	22.042	0.28906	22.029	21.86	22.149	-0.013731	1077	37	0.9735726	0.021962345	0.9720532	394.00586	0	8.888184						285	13	4	NaN	NaN	NaN	0.12748	1	18332	18332		52.995	34.761	1	29554			25526	384	14716	15134	20324	20324					0.040271314572237316
SYITEECLKKL	11	Unmodified						0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	442.903973	1325.69009	1.2928	0.00057258	-1.1585	-0.0005131	0.13429	5.948E-05	442.90304019443784	21.994	0.072239	21.994	21.946	22.019	0	1404	31	0.77288127	0.018520832	0.77288127	469.1751		11.243011	-0.01707	0.0010343	0.0016858	NaN	15.475	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5850.5			25527	384	14716	15134							0.040271314572237316
SYITMDMTKM	10	Unmodified	_SYITMDMTKM_					0	0	0			REV__ENST00000427401.8_1_19:20728650-20728701:-|nuORF	REV__ENST00000427401.8_1_19:20728650-20728701:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.7716276822999	2	610.771628	1219.5287	0.97961	0.00059832	-1.5118	-0.00092338	-0.53222	-0.00032506	610.7728118812197	30.703	0.072342	30.698	30.698	30.77	-0.0057564	1131	79	0.94059354	0.04771352	0.93907416	381.00085	0	19.327026						101	4	3	NaN	NaN	NaN	0.77421	1	16280	16280		1.9246	0	1	5306.3	+		25528	12137	14717	15135	20325	20325					-0.07228077171862424
SYITNNEHFA	10	Unmodified	_SYITNNEHFA_					0	0	0			REV__CYP4A22|p.D240N|1|0.26|ENSG00000162365|chr1:47143844-47143844|G/A|missense_variant	REV__CYP4A22|p.D240N|1|0.26|ENSG00000162365|chr1:47143844-47143844|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.2725522896001	2	598.272552	1194.53055	0.61934	0.00037053	5.554	0.0033228	6.1733	0.0036933	598.274052897763	32.972	0.14468	32.969	32.945	33.09	-0.0024757	1179	67	0.9112251	0.040412188	0.90970564	369.1911	0	16.373352						181	7	3	NaN	NaN	NaN	0.65442	1	15653	15653		11.17	0	1	18802	+		25529	8301	14718	15136	20326	20326					-0.05893240775708364
SYKKSTES	8	Unmodified	_SYKKSTES_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.2323644966	2	465.232364	928.450176	0.7884	0.00036679	0.58282	0.00027115	1.3712	0.00063793	465.2326404699254	11.862	0.40814	11.854	11.614	12.022	-0.0081863	1332	88	0.8172735	0.053608656	0.81575406	332.20712	0	21.790955						429	18	4	NaN	NaN	NaN	0.69898	1	6425	6425		19.118	0	1	172470	+		25530	8372	14719	15137	20327	20327					-0.01691102098754982
SYKKSTES	8	Unmodified						0	0	0			REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	465.232364	928.450176	1.613	0.0007504	-0.54655	-0.00025427	1.0664	0.00049613	465.2320603748992	11.836	0.50424	11.836	11.668	12.172	0	1332	52	0.8172735	0.03140533	0.8172735	332.20712		12.765717	-0.0089848	-0.00033063	0.00075972	NaN	19.118	733	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258250	+		25531	8372	14719	15137							-0.01691102098754982
SYKKSTES	8	Unmodified						0	0	0			REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-3|PHTF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.232364	928.450176	0.7884	0.00036679	0.58282	0.00027115	1.3712	0.00063793	465.2326404699254	11.862	0.40814	11.854	11.614	12.022	-0.0081863	1332	88	0.8172735	0.053608656	0.81575406	332.20712		21.790955	0.0089848	0.00072021	-0.00075972	NaN	19.118	429	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172470	+		25532	8372	14719	15137							-0.01691102098754982
SYKNPFMR	8	Unmodified	_SYKNPFMR_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5138619685	1	1042.51386	1041.50659	0.93518	0.00097494	-4.0993	-0.0042736	-3.1641	-0.0032987	1042.5088717584395	31.259	0.24133	31.259	31.163	31.404	0	168	109	1.5192716	0.06376016	1.5192716	308.29306	0	12.938324						325	11	2	NaN	NaN	NaN	0.8439	1	10266	10266		3.1533	0	1	52886	+		25533	9846	14720	15138	20328	20328					-0.012507527430898335
SYKRSNFYI	9	Unmodified	_SYKRSNFYI_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000088367|ENST00000338074|EPB41L1;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3036554527501	2	589.303655	1176.59276	1.8298	0.0010783	7.9619	0.004692	9.7917	0.0057703	589.8103965953987	18.626	0.09602	18.612	18.564	18.66	-0.014059	1197	46	0.9001988	0.027576089	0.8986794	364.7872	0	11.174652						113	5	3	NaN	NaN	NaN	0.25448	1	15138	15138		21.835	7.7934	1	7300.1			25534	900	14721	15139	20329	20329					0.011525303632879513
SYLAESLEL	9	Unmodified	_SYLAESLEL_					0	0	0		ENSG00000188167|ENST00000342462|TMPPE	ENSG00000188167|ENST00000342462|TMPPE	ENSG00000188167|ENST00000342462|TMPPE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5197184324	1	1024.51972	1023.51244	1.7671	0.0018104	-0.50809	-0.00052055	1.259	0.0012899	1024.517739210217	28.749	0.048244	28.74	28.74	28.789	-0.0083504	168	73	1.5192716	0.042547345	1.5177522	308.3639	0	8.635773						64	3	2	NaN	NaN	NaN	0.47587	1	9312	9312		10.605	4.3548	1	4672.9			25535	5540	14722	15140	20330	20330					0.0016262424957176336
SYLAGLIFL	9	Unmodified	_SYLAGLIFL_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5764454503	1	996.576445	995.569169	1.1201	0.0011163	0.52591	0.00052411	1.6461	0.0016404	996.5764659092307	33.889	0.096497	33.887	33.863	33.96	-0.0012474	135	58	1.5387528	0.033631682	1.5372335	312.43448	0	6.828705						130	5	3	NaN	NaN	NaN	0.062072	1	8257	8257		41.785	0.32444	1	11838	+		25536	9783	14723	15141	20331	20331					0.07120716596739385
SYLAGLIFL	9	Unmodified						0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	996.576445	995.569169	1.1317	0.0011278	-0.016975	-1.6917E-05	1.1147	0.0011109	996.5762137635135	33.89	0.0965	33.89	33.866	33.962	0	138	55	1.5369828	0.031863213	1.5369828	312.07507		6.469635	0.0012319	-0.00017999	-0.00012532	NaN	41.785	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15469	+		25537	9783	14723	15141							0.07120716596739385
SYLAGLIFL	9	Unmodified						0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	996.576445	995.569169	1.1201	0.0011163	0.52591	0.00052411	1.6461	0.0016404	996.5764659092307	33.889	0.096497	33.887	33.863	33.96	-0.0012474	135	58	1.5387528	0.033631682	1.5372335	312.43448		6.828705	-0.0012319	0.00036103	0.00012532	NaN	41.785	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11838	+		25538	9783	14723	15141							0.07120716596739385
SYLDEGFLL	9	Unmodified	_SYLDEGFLL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5248038103	1	1056.5248	1055.51753	1.2799	0.0013522	1.8444	0.0019487	3.1243	0.0033008	1056.5258503109358	33.431	0.12067	33.431	33.407	33.528	0	102	73	1.5582114	0.04243934	1.5582114	316.13992	0	8.610352						162	6	2	NaN	NaN	NaN	0.20577	1	10885	10885		24.961	4.4056	1	17496			25539	4458	14724	15142	20332	20332					-0.00801071887804028
SYLDEGFLL	9	Unmodified						0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.5248	1055.51753	0.90739	0.00095868	2.9429	0.0031093	3.8503	0.004068	1056.5271647324669	33.43	0.096512	33.428	33.404	33.501	-0.0018501	99	70	1.5599792	0.040668845	1.5584598	316.49857		8.251129	-0.0016148	0.00061661	0.0001242	NaN	24.961	152	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15030			25540	4458	14724	15142							-0.00801071887804028
SYLDKVRAL	9	Unmodified	_SYLDKVRAL_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000171346|ENST00000254043|KRT15;ENSG00000186847|ENST00000167586|KRT14;ENSG00000128422|ENST00000311208|KRT17	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	355.5414745923	3	355.541475	1063.60259	1.5059	0.00053542	-2.1789	-0.0007747	-0.67302	-0.00023929	355.5405680421363	20.429	0.096172	20.429	20.405	20.501	0	1470	55	0.7320868	0.03342074	0.7320868	445.5369	0	20.339386						184	5	3	NaN	NaN	NaN	0.062072	1	11298	11298		30.035	6.9496	1	38357		+	25541	187;206;176	14725	15143	20333	20333					0.07333718368658992
SYLDKVRAL	9	Unmodified	_SYLDKVRAL_					0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000171346|ENST00000254043|KRT15;ENSG00000186847|ENST00000167586|KRT14;ENSG00000128422|ENST00000311208|KRT17	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.8085736551501	2	532.808574	1063.60259	1.0273	0.00054734	-1.3735	-0.00073183	-0.34627	-0.0001845	532.8081513692389	20.477	0.096218	20.463	20.415	20.511	-0.014141	1218	52	0.8873258	0.031273186	0.8858064	360.01303	0	12.688416						190	5	3	NaN	NaN	NaN	0.010878	1	11037	11037		90.252	17.823	1	117610		+	25542	187;206;176	14725	15143	20334	20334					0.07333718368658992
SYLDKVRAL	9	Unmodified						0	0	0		ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__A2A4G1;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645	ENSG00000171346|ENST00000254043|KRT15;ENSG00000186847|ENST00000167586|KRT14;ENSG00000128422|ENST00000311208|KRT17	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	355.541475	1063.60259	1.5956	0.00056731	-1.6274	-0.00057862	-0.0318	-1.1306E-05	355.5411109809375	20.477	0.12027	20.463	20.415	20.535	-0.014141	1470	55	0.7320868	0.033417165	0.73056734	445.5369		20.337158	0.017069	0.00037217	-0.00075972	NaN	30.035	196	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36253		+	25543	187;206;176	14725	15143							0.07333718368658992
SYLDNFIKI	9	Unmodified	_SYLDNFIKI_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.8029569610001	2	556.802957	1111.59136	1.3429	0.00074776	-1.4962	-0.00083311	-0.15329	-8.5353E-05	556.802687605186	29.401	0.24135	29.401	29.305	29.546	0	1218	64	0.8873258	0.03863573	0.8873258	359.81427	0	15.666962						392	11	4	NaN	NaN	NaN	0.0080618	1	13349	13349		96.341	61.045	1	97498			25544	2655	14726	15144	20335	20335					0.040028962745282115
SYLDNFIKI	9	Unmodified	_SYLDNFIKI_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.8029569610001	2	556.802957	1111.59136	1.2346	0.00068743	-0.78024	-0.00043444	0.45437	0.00025299	556.8027964389959	29.424	0.24129	29.417	29.344	29.586	-0.0077209	1218	67	0.8873258	0.04046899	0.8858064	359.81427	0	16.41034						398	11	4	NaN	NaN	NaN	0.0040343	1	12973	12973		104.89	62.573	1	98279			25545	2655	14726	15144	20336	20336					0.040028962745282115
SYLDNFIKI	9	Unmodified						0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.802957	1111.59136	1.7638	0.00098209	-4.3328	-0.0024125	-2.569	-0.0014304	557.3011543383166	29.304	0.072372	29.296	29.248	29.32	-0.0077229	1227	46	0.88180584	0.02759397	0.8802864	357.5759		11.189453	-0.052505	-0.0028699	-0.0035197	NaN	96.341	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3442.4			25546	2655	14726	15144							0.040028962745282115
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8322457167001	2	620.832246	1239.64994	1.2113	0.000752	-3.0306	-0.0018815	-1.8193	-0.0011295	620.8313818227728	27.495	0.12071	27.495	27.446	27.567	0	1131	52	0.94059354	0.03118217	0.94059354	380.93164	0	12.628479						174	6	4	NaN	NaN	NaN	0.019258	1	17524	17524		63.995	43.481	1	34331			25547	4671	14727	15145	20337	20337					0.039699528490018565
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.8322457167001	2	620.832246	1239.64994	0.60657	0.00037658	-2.7578	-0.0017121	-2.1512	-0.0013356	620.8313249984824	27.518	0.1448	27.508	27.46	27.605	-0.009552	1131	43	0.94059354	0.025675297	0.93907416	380.93164	0	10.398224						165	7	4	NaN	NaN	NaN	0.013678	1	16781	16781		66.544	43.426	1	32818			25548	4671	14727	15145	20338	20338					0.039699528490018565
SYLDRCLHKF	10	Unmodified	_SYLDRCLHKF_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.88513544309995	3	427.885135	1280.63358	1.5403	0.00065907	-0.57561	-0.0002463	0.96469	0.00041278	427.8847155803186	20.045	0.096138	20.045	19.997	20.093	0	1476	28	0.72837335	0.016713142	0.72837335	442.31693	0	10.149292						65	5	2	NaN	NaN	NaN	0.76053	1	18432	18432		3.9087	0.87218	1	4444			25549	5716	14728	15146	20339	20339					0.004485484112365157
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.7827528351501	2	562.782753	1123.55095	2.1056	0.001185	-1.8045	-0.0010155	0.30112	0.00016947	562.7818042219549	19.18	0.26396	19.18	19.084	19.348	0	1230	61	0.8799654	0.036813855	0.8799654	356.78308	0	14.9262085						452	12	5	NaN	NaN	NaN	0.057409	1	13822	13822		55.958	24.283	1	167020			25550	683	14729	15147	20340	20340					-0.005880701158957891
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.7827528351501	2	562.782753	1123.55095	1.7838	0.0010039	-1.0557	-0.00059411	0.72816	0.0004098	562.7821525095869	19.202	0.21629	19.188	19.14	19.356	-0.014141	1233	55	0.87812483	0.033132493	0.8766054	356.0368	0	13.433594						389	10	4	NaN	NaN	NaN	0.02161	1	13399	13399		86.17	35.855	1	158620			25551	683	14729	15147	20341	20341					-0.005880701158957891
SYLDRVRSL	9	Unmodified	_SYLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	370.2084954698	3	370.208495	1107.60366	2.5535	0.00094535	-1.877	-0.00069487	0.67657	0.00025047	370.20695781410524	20.116	0.072222	20.102	20.078	20.15	-0.014141	1503	34	0.711653	0.020447075	0.71013355	432.8816	0	12.4374695						48	4	2	NaN	NaN	NaN	0.2961	1	12816	12816		13.101	0	1	2782.1			25552	1791;7535	14730	15148	20342	20342					0.0541593273756007
SYLDSIHFF	9	Unmodified	_SYLDSIHFF_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7716568326001	2	564.771657	1127.52876	1.1596	0.00065492	-1.2161	-0.00068682	-0.056473	-3.1895E-05	564.7706823458684	30.341	0.31368	30.335	30.238	30.552	-0.0064106	1185	100	0.90755045	0.060687065	0.906031	367.95172	0	24.604614						483	14	3	NaN	NaN	NaN	0.19268	1	13551	13551		36.586	14.751	1	133470			25553	323	14731	15149	20343	20343					-0.029902497936518557
SYLDSIHFF	9	Unmodified						0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.I1431V|1|0.34|ENSG00000005339|chr16:3738662-3738662|T/C|missense_variant	nc|ENSG00000005339|Q92793-2|CREBBP	nc|ENSG00000005339|Q92793-2|CREBBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.771657	1127.52876	2.0509	0.0011583	-1.6618	-0.00093854	0.3891	0.00021975	564.7706135042926	30.342	0.24133	30.342	30.294	30.535	0	1185	100	0.90755045	0.060687065	0.90755045	367.95172		24.604614	0.0036985	-0.00018063	0.00075972	NaN	36.586	427	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125430			25554	323	14731	15149							-0.029902497936518557
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7638318005	2	557.763832	1113.51311	1.4284	0.00079669	1.1096	0.00061888	2.5379	0.0014156	557.7640965075899	28.725	0.1448	28.725	28.677	28.822	0	1200	76	0.89836043	0.04598999	0.89836043	364.28113	0	18.648743						249	7	4	NaN	NaN	NaN	0.12945	1	13412	13412		31.561	6.6	1	38340			25555	1240	14732	15150	20344	20344					-0.03910536310718271
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7638318005	2	557.763832	1113.51311	1.1128	0.00062068	1.8425	0.0010277	2.9553	0.0016483	557.7646745397304	28.725	0.19303	28.716	28.596	28.789	-0.0083504	1197	88	0.9001988	0.053359926	0.8986794	365.02658	0	21.637207						295	9	4	NaN	NaN	NaN	0.27442	1	13032	13032		20.555	1.4371	1	39098			25556	1240	14732	15150	20345	20345					-0.03910536310718271
SYLDVYLIHW	10	Unmodified	_SYLDVYLIHW_					0	0	0		nc|ENSG00000227471|C9JRZ8|AKR1B15;ENSG00000198074|ENST00000359579|AKR1B10;ENSG00000227471|ENST00000457545|AKR1B15	nc|ENSG00000227471|C9JRZ8|AKR1B15	nc|ENSG00000227471|C9JRZ8|AKR1B15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.8347884056501	2	654.834788	1307.65502	0.82777	0.00054206	-2.7902	-0.0018271	-1.9624	-0.001285	654.8311716666426	32.32	0.12066	32.316	32.292	32.413	-0.0037613	1101	49	0.95892316	0.029308379	0.9574037	388.13242	0	11.8628235						68	6	2	NaN	NaN	NaN	0.71345	1	18062	18062		13.003	7.5529	1	4828.1			25557	5754	14733	15151	20346	20346					0.01350256711612019
SYLEFGEPL	9	Unmodified	_SYLEFGEPL_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.75821510635	2	527.758215	1053.50188	1.1322	0.0005975	-1.3775	-0.000727	-0.24538	-0.0001295	527.756508849447	22.115	0.072304	22.101	22.053	22.125	-0.013731	1269	40	0.8560222	0.023961365	0.85450274	347.35483	0	9.722992						67	4	2	NaN	NaN	NaN	0.47587	1	10559	10559		10.605	0	1	7054.7	+		25558	8927	14734	15152	20347	20347					-0.022733584048637567
SYLEFGEPL	9	Unmodified						0	0	0			REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.758215	1053.50188	1.6547	0.00087326	2.5261	0.0013332	4.1808	0.0022064	527.7586086294842	22.115	0.12067	22.115	22.067	22.187	0	1269	52	0.8560222	0.031327307	0.8560222	347.35483		12.711914	0.0070479	0.0019587	0.00075972	NaN	10.605	103	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8473	+		25559	8927	14734	15152							-0.022733584048637567
SYLEFGEPL	9	Unmodified						0	0	0			REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-3|RPAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.758215	1053.50188	1.1322	0.0005975	-1.3775	-0.000727	-0.24538	-0.0001295	527.756508849447	22.115	0.072304	22.101	22.053	22.125	-0.013731	1269	40	0.8560222	0.023961365	0.85450274	347.35483		9.722992	-0.0070479	-0.0021616	-0.00075972	NaN	10.605	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7054.7	+		25560	8927	14734	15152							-0.022733584048637567
SYLEGAVYI	9	Unmodified	_SYLEGAVYI_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.514239124	1	1014.51424	1013.50696	2.284	0.0023172	-1.0383	-0.0010533	1.2458	0.0012638	1014.5134949868117	28.026	0.19304	28.026	27.977	28.17	0	108	88	1.5546752	0.05129981	1.5546752	315.59113	0	10.413605						310	9	4	NaN	NaN	NaN	0.03623	1	9124	9124		52.758	0.13421	1	50414			25561	2919	14735	15153	20348	20348					0.0007494545775443839
SYLEGAVYI	9	Unmodified	_SYLEGAVYI_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.514239124	1	1014.51424	1013.50696	1.4764	0.0014979	-0.30772	-0.00031219	1.1687	0.0011857	1014.5140418774782	28.025	0.24137	28.016	27.968	28.209	-0.0089779	105	85	1.5564433	0.04952824	1.5549239	315.95004	0	10.053986						337	11	4	NaN	NaN	NaN	0.018156	1	8946	8946		74.332	37.745	1	51120			25562	2919	14735	15153	20349	20349					0.0007494545775443839
SYLEGCYPR	9	Unmodified	_SYLEGCYPR_					0	0	0		ENSG00000198788|ENST00000675028|MUC2;nc|ENSG00000198788|Q02817|MUC2	ENSG00000198788|ENST00000675028|MUC2	ENSG00000198788|ENST00000675028|MUC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.24749163205	2	544.247492	1086.48043	1.6263	0.00088511	-0.096745	-5.2653E-05	1.5296	0.00083246	544.2488574505801	25.057	0.19302	25.057	24.985	25.178	0	1269	85	0.8560222	0.051584005	0.8560222	347.21875	0	20.923431						426	9	5	NaN	NaN	NaN	0.56671	1	12230	12230		6.8632	0	1	53379			25563	5807	14736	15154	20350	20350					-0.059350667052285644
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.32679619805	2	607.326796	1212.63904	1.6015	0.00097262	4.0347	0.0024504	5.6361	0.003423	607.3257732509229	22.79	0.12058	22.79	22.742	22.863	0	1173	79	0.91489893	0.047770202	0.91489893	370.6164	0	19.351227						342	6	5	NaN	NaN	NaN	0.031913	1	16801	16801		58.769	28.734	1	58450			25564	452	14737	15155	20351	20351					0.04122550474698983
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.32679619805	2	607.326796	1212.63904	1.0392	0.00063116	3.2281	0.0019605	4.2673	0.0025917	607.3261568589097	22.838	0.14453	22.824	22.752	22.896	-0.01354	1173	88	0.91489893	0.05327928	0.9133795	370.6164	0	21.582916						355	7	4	NaN	NaN	NaN	0.031913	1	16128	16128		58.769	29.874	1	61943			25565	452	14737	15155	20352	20352					0.04122550474698983
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2563709091501	2	562.256371	1122.49819	1.9405	0.0010911	-1.6411	-0.00092272	0.29942	0.00016835	562.2548485039373	22.308	0.12063	22.308	22.26	22.38	0	1272	64	0.854179	0.038694263	0.854179	346.33188	0	15.688812						230	6	4	NaN	NaN	NaN	0.013696	1	13778	13778		81.699	42.241	1	57345			25566	1679	14738	15156	20353	20353					-0.058160281787195345
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.2563709091501	2	562.256371	1122.49819	1.2513	0.00070355	-0.92311	-0.00051903	0.32818	0.00018452	562.2556849255324	22.332	0.19258	22.318	22.246	22.438	-0.013731	1272	49	0.854179	0.029489279	0.8526596	346.33188	0	11.956604						235	9	3	NaN	NaN	NaN	0.030669	1	13366	13366		58.235	30.447	1	59291			25567	1679	14738	15156	20354	20354					-0.058160281787195345
SYLERHGLINF	11	Unmodified	_SYLERHGLINF_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.2384546830667	3	450.238455	1347.69353	1.1572	0.000521	-2.9643	-0.0013346	-1.8071	-0.00081363	450.23724298508967	22.525	0.072308	22.525	22.501	22.573	0	1455	43	0.7413668	0.025977015	0.7413668	449.9687	0	15.766632						107	4	3	NaN	NaN	NaN	0.72557	1	19515	19515		5.7784	2.4739	1	9984.7			25568	306	14739	15157	20355	20355					0.033595623461451396
SYLERYQRF	9	Unmodified	_SYLERYQRF_					0	0	0		ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.21565004433324	3	421.21565	1260.62512	1.927	0.00081168	-2.7093	-0.0011412	-0.78229	-0.00032951	421.21440476198126	17.885	0.14392	17.885	17.861	18.005	0	1446	37	0.7469324	0.022256374	0.7469324	453.6639	0	13.517822						80	7	2	NaN	NaN	NaN	0.27507	1	18012	18012		20.513	11.51	1	6736.3			25569	649	14740	15158	20356	20356					0.005233177662603339
SYLEVLLKL	9	Unmodified	_SYLEVLLKL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.3313502597	2	539.33135	1076.64815	1.3957	0.00075277	-2.3802	-0.0012837	-0.98446	-0.00053095	539.3301779331738	32.514	0.16892	32.514	32.49	32.659	0	1236	43	0.876284	0.02576971	0.876284	355.478	0	10.453888						173	8	4	NaN	NaN	NaN	0.11656	1	11848	11848		33.425	10.091	1	17501			25570	3453	14741	15159	20357	20357					0.11288943831027609
SYLEVLLKL	9	Unmodified	_SYLEVLLKL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3313502597	2	539.33135	1076.64815	0.83382	0.0004497	-3.5488	-0.001914	-2.715	-0.0014643	539.3296972386331	32.586	0.12069	32.583	32.51	32.631	-0.0031052	1230	40	0.8799654	0.023927689	0.878446	356.9714	0	9.7066345						132	6	3	NaN	NaN	NaN	0.11656	1	11537	11537		33.425	8.8633	1	14779			25571	3453	14741	15159	20358	20358					0.11288943831027609
SYLGAFFSF	9	Unmodified	_SYLGAFFSF_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B;ENST00000466379.1_1_1:10189503-10195243:+|nuORF	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4931097514	1	1038.49311	1037.48583	1.4874	0.0015447	0.070569	7.3285E-05	1.558	0.001618	1038.4925742806827	36.35	0.1929	36.35	36.302	36.495	0	156	67	1.5263584	0.03896463	1.5263584	309.7468	0	7.907135						311	9	3	NaN	NaN	NaN	0.0072287	1	10097	10097		98.041	39.442	1	51513			25572	2681	14742	15160	20359	20359					-0.03141019851091187
SYLGAFFSF	9	Unmodified	_SYLGAFFSF_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B;ENST00000466379.1_1_1:10189503-10195243:+|nuORF	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4931097514	1	1038.49311	1037.48583	1.5206	0.0015792	0.69625	0.00072305	2.2169	0.0023022	1038.4933719827345	36.348	0.19261	36.35	36.302	36.494	0.0016747	153	64	1.5281296	0.03719151	1.5266101	310.10623	0	7.547333						273	9	2	NaN	NaN	NaN	0.011942	1	9889	9889		87.021	45.561	1	51112			25573	2681	14742	15160	20360	20360					-0.03141019851091187
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.77693917575	2	585.776939	1169.53933	1.7565	0.0010289	3.6089	0.002114	5.3654	0.0031429	585.779597216207	27.35	0.12069	27.35	27.326	27.446	0	1164	82	0.9204082	0.04959947	0.9204082	373.00272	0	20.100586						182	6	2	NaN	NaN	NaN	0.10956	1	15466	15466		34.439	15.275	1	61060			25574	667	14743	15161	20361	20361					-0.038662671392330594
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.77693917575	2	585.776939	1169.53933	1.1796	0.00069098	4.5525	0.0026668	5.7321	0.0033577	585.7803123502289	27.397	0.24133	27.387	27.339	27.58	-0.010126	1164	79	0.9204082	0.04775989	0.91888875	373.00272	0	19.355072						290	11	2	NaN	NaN	NaN	0.25448	1	14927	14927		21.835	4.036	1	69011			25575	667	14743	15161	20362	20362					-0.038662671392330594
SYLIEIQCI	9	Unmodified	_SYLIEIQCI_					0	0	0		ENSG00000182533|ENST00000343849|CAV3	ENSG00000182533|ENST00000343849|CAV3	ENSG00000182533|ENST00000343849|CAV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.28354278735	2	541.283543	1080.55253	2.0611	0.0011157	2.2309	0.0012076	4.2921	0.0023232	541.2846443552905	16.278	0.33583	16.278	16.23	16.566	0	1263	49	0.85970795	0.02948296	0.85970795	348.7377	0	11.959656						442	15	5	NaN	NaN	NaN	0.02857	1	12016	12016		60.982	5.5685	1	180660			25576	5268	14744	15162	20363	20363					0.015478476484986459
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5561039387	1	1024.5561	1023.54883	2.86	0.0029302	-0.087086	-8.9225E-05	2.7729	0.002841	1024.556042808123	29.98	0.24138	29.98	29.932	30.173	0	123	172	1.5458313	0.10100198	1.5458313	313.75452	0	20.500214						912	11	6	NaN	NaN	NaN	0.00020136	1	9518	9518		116.74	54.759	1	397610			25577	729	14745	15163	20364	20364					0.0379950114629537
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5561039387	1	1024.5561	1023.54883	1.7549	0.001798	-0.016759	-1.7171E-05	1.7381	0.0017808	1024.5565840906936	29.979	0.24131	29.973	29.925	30.166	-0.0064087	123	166	1.5458313	0.09743738	1.5443119	313.75452	0	19.776703						796	11	4	NaN	NaN	NaN	8.7755E-05	1	9335	9335		123.66	61.681	1	387170			25578	729	14745	15163	20365	20365					0.0379950114629537
SYLKGDNFFRF	11	Unmodified	_SYLKGDNFFRF_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.23482167063327	3	465.234822	1392.68264	0.94541	0.00043984	-2.1695	-0.0010093	-1.2241	-0.00056948	465.23374861906996	24.743	0.048254	24.743	24.719	24.767	0	1380	40	0.7876915	0.024057508	0.7876915	477.92862	0	14.596802						63	3	3	NaN	NaN	NaN	0.65801	1	20003	20003		10.213	9.4968	1	5889.2			25579	3677	14746	15164	20366	20366					0.002001599718369107
SYLKLRYTN	9	Unmodified	_SYLKLRYTN_					0	0	0			REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3193055169501	2	579.319306	1156.62406	1.6742	0.00096987	-10.283	-0.0059574	-8.6092	-0.0049875	579.3144748244991	19.611	0.1204	19.597	19.549	19.669	-0.014141	1164	31	0.9204082	0.01836127	0.91888875	373.05133	0	7.4420166						99	6	3	NaN	NaN	NaN	0.57723	1	14542	14542		6.4299	0	1	7892.8	+		25580	11153	14747	15165	20367	20367					0.05201103397371298
SYLKLRYTN	9	Unmodified						0	0	0			REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	579.319306	1156.62406	1.8549	0.0010746	-10.813	-0.0062643	-8.9583	-0.0051897	579.3128318994608	19.516	0.096012	19.516	19.492	19.588	0	1164	37	0.9204082	0.022033453	0.9204082	373.05133		8.930389	-0.040297	-0.00020319	0.00075972	NaN	6.4299	99	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8560.2	+		25581	11153	14747	15165							0.05201103397371298
SYLKLRYTN	9	Unmodified						0	0	0			REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	REV__ENST00000461836.5_1_2:162903409-162929972:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	579.319306	1156.62406	1.6742	0.00096987	-10.283	-0.0059574	-8.6092	-0.0049875	579.3144748244991	19.611	0.1204	19.597	19.549	19.669	-0.014141	1164	31	0.9204082	0.01836127	0.91888875	373.05133		7.4420166	0.040297	0.00041065	-0.00075972	NaN	6.4299	99	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7892.8	+		25582	11153	14747	15165							0.05201103397371298
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.8111163441	2	566.811116	1131.60768	1.6483	0.00093426	-0.19993	-0.00011332	1.4483	0.00082094	566.8115179665676	21.296	0.1925	21.296	21.224	21.416	0	1050	61	0.9900381	0.036580205	0.9900381	401.37756	0	14.830231						201	9	3	NaN	NaN	NaN	0.042816	1	14155	14155		49.961	31.992	1	22290			25583	3460	14748	15166	20368	20368					0.04714022231269155
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.2098363849333	3	378.209836	1131.60768	1.5025	0.00056824	-1.4444	-0.00054629	0.05806	2.1959E-05	378.2090221902814	21.392	0.14428	21.378	21.306	21.45	-0.014006	1491	43	0.7190863	0.026010871	0.71756685	437.28925	0	15.817657						161	7	3	NaN	NaN	NaN	0.062072	1	13708	13708		36.235	13.058	1	17616			25584	3460	14748	15166	20369	20369					0.04714022231269155
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.8111163441	2	566.811116	1131.60768	1.2635	0.00071616	-0.93383	-0.0005293	0.32966	0.00018686	566.8103856800332	21.368	0.1925	21.354	21.306	21.499	-0.014006	1050	52	0.9900381	0.031084836	0.9885187	401.37756	0	12.602295						221	9	3	NaN	NaN	NaN	0.030669	1	13709	13709		58.235	20.105	1	22836			25585	3460	14748	15166	20370	20370					0.04714022231269155
SYLKQLPHF	9	Unmodified						0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	378.209836	1131.60768	1.3546	0.00051233	-2.3919	-0.00090465	-1.0373	-0.00039232	378.2086844317676	21.296	0.16846	21.296	21.224	21.392	0	1491	37	0.7190863	0.022297442	0.7190863	437.28925		13.559479	-0.041157	-0.00065495	0.00075972	NaN	36.235	141	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15692			25586	3460	14748	15166							0.04714022231269155
SYLLQSTEL	9	Unmodified	_SYLLQSTEL_					0	0	0		ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3;nc|ENSG00000100599|Q8TB24-4|RIN3	ENST00000418924.6_1_14:93042630-93154594:+|nuORF	ENST00000418924.6_1_14:93042630-93154594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5462675339	1	1053.54627	1052.53899	2.1181	0.0022315	-1.6512	-0.0017396	0.46686	0.00049186	1053.5424742922462	26.65	0.072401	26.65	26.625	26.698	0	138	73	1.5369828	0.042506814	1.5369828	311.8443	0	8.624359						67	4	2	NaN	NaN	NaN	0.05973	1	10743	10743		55.592	16.674	1	8244			25587	1261	14749	15167	20371	20371					0.014823131409002599
SYLNKPLVF	9	Unmodified	_SYLNKPLVF_					0	0	0		ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8080423389	2	540.808042	1079.60153	1.3438	0.00072675	-3.776	-0.0020421	-2.4322	-0.0013153	540.8059800407073	24.55	0.14468	24.55	24.502	24.647	0	1230	61	0.8799654	0.036825776	0.8799654	356.95908	0	14.938416						156	7	3	NaN	NaN	NaN	0.11656	1	11972	11972		33.425	14.307	1	18116			25588	7461	14750	15168	20372	20372					0.06491503999745873
SYLNKPLVF	9	Unmodified	_SYLNKPLVF_					0	0	0		ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	ENST00000533469.5_1_1:211449632-211451486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.8080423389	2	540.808042	1079.60153	1.2292	0.00066478	-2.1948	-0.0011869	-0.96552	-0.00052216	540.8067985476596	24.574	0.072407	24.562	24.538	24.61	-0.012392	1230	61	0.8799654	0.03681785	0.878446	356.95908	0	14.935181						110	4	3	NaN	NaN	NaN	0.2345	1	11662	11662		23.118	11.947	1	14355			25589	7461	14750	15168	20373	20373					0.06491503999745873
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7794818647001	2	559.779482	1117.54441	1.1367	0.00063632	-1.3697	-0.00076674	-0.23297	-0.00013041	559.7791975155309	34.347	0.12045	34.346	34.322	34.442	-0.0012474	1191	70	0.90387505	0.042297065	0.9023556	366.50113	0	17.150513						133	6	2	NaN	NaN	NaN	0.41766	1	13181	13181		13.003	1.4544	1	16185			25590	4403	14751	15169	20374	20374					-0.009659632766215509
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2958304206501	2	540.29583	1078.57711	1.7574	0.00094951	-1.4429	-0.0007796	0.31448	0.00016991	540.2952919206087	20.165	0.14416	20.165	20.093	20.237	0	1257	43	0.86339295	0.025794804	0.86339295	350.2406	0	10.463806						178	7	3	NaN	NaN	NaN	0.041983	1	11921	11921		50.315	8.5306	1	52996			25591	3005	14752	15170	20375	20375					0.04096243846242942
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2958304206501	2	540.29583	1078.57711	1.4537	0.00078541	-1.6164	-0.00087331	-0.16268	-8.7898E-05	540.2952297262719	20.188	0.12037	20.174	20.126	20.246	-0.014141	1260	52	0.8615505	0.031320512	0.8600311	349.49323	0	12.705353						183	6	3	NaN	NaN	NaN	0.02857	1	11617	11617		60.982	29.421	1	55247			25592	3005	14752	15170	20376	20376					0.04096243846242942
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5142391239997	1	1074.51424	1073.50696	1.8834	0.0020238	-0.050237	-5.398E-05	1.8332	0.0019698	1074.5147950963867	32.37	0.36198	32.37	32.321	32.683	0	141	214	1.5352125	0.12580967	1.5352125	311.4064	0	25.519531						1724	16	5	NaN	NaN	NaN	0.00020136	1	11701	11701		116.74	61.242	1	690480			25593	4132	14753	15171	20377	20377					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5142391239997	1	1074.51424	1073.50696	1.7652	0.0018967	0.046136	4.9574E-05	1.8113	0.0019463	1074.51488482349	32.344	0.38611	32.341	32.292	32.678	-0.0037613	138	232	1.5369828	0.13647056	1.5354633	311.76547	0	27.682007						1832	17	5	NaN	NaN	NaN	0.0040938	1	11400	11400		104.71	60.408	1	708710			25594	4132	14753	15171	20378	20378					-0.026850545422576033
SYLPHAPPFA	10	Unmodified	_SYLPHAPPFA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2821917291501	2	550.282192	1098.54983	1.75	0.00096298	-1.5914	-0.0008757	0.15861	8.7283E-05	550.2816794185424	23.345	0.19294	23.345	23.272	23.465	0	1224	82	0.883646	0.04969603	0.883646	358.37418	0	20.154877						381	9	3	NaN	NaN	NaN	0.24618	1	12789	12789		31.561	18.558	1	58374			25595	4774	14754	15172	20379	20379					0.004497603058553068
SYLPHAPPFA	10	Unmodified	_SYLPHAPPFA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.2821917291501	2	550.282192	1098.54983	1.8204	0.0010017	-1.3842	-0.00076168	0.43626	0.00024006	550.2818128952069	23.368	0.19301	23.355	23.258	23.451	-0.013294	1224	73	0.883646	0.04417187	0.88212657	358.37418	0	17.91449						324	9	3	NaN	NaN	NaN	0.032325	1	12453	12453		58.599	39.481	1	51329			25596	4774	14754	15172	20380	20380					0.004497603058553068
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5349745661001	1	1024.53497	1023.5277	1.36	0.0013934	0.75028	0.00076869	2.1103	0.0021621	1024.5365847342655	30.317	0.16889	30.311	30.263	30.431	-0.0064087	168	163	1.5192716	0.095752	1.5177522	308.36383	0	19.434631						634	8	4	NaN	NaN	NaN	0.012495	1	9322	9322		85.344	18.19	1	110920			25597	1031	14755	15173	20381	20381					0.016875358374363714
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(47)F	0	0	1		nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7706025876	2	547.770603	1093.52665	1.6102	0.000882	0.13982	7.6592E-05	1.75	0.00095859	547.7705248794422	24.188	0.14489	24.188	24.092	24.237	0	1221	97	0.885486	0.058895826	0.885486	359.14084	0	23.88733						540	7	4	NaN	NaN	NaN	0.049033	1	12540	12540		47.321	15.646	1	335840			25598	5684	14756	15174	20382	20382		582			-0.016370018031238942
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4941723838998	1	950.494172	949.486896	1.9756	0.0018778	-0.94745	-0.00090055	1.0282	0.00097729	950.4942444608275	23.393	0.12062	23.393	23.369	23.489	0	276	52	1.4553556	0.030238748	1.4553556	295.69696	0	6.1438293						148	6	3	NaN	NaN	NaN	0.03618	1	7074	7074		52.78	22.17	1	16918			25599	4223	14757	15175	20383	20383					0.010131945177818125
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.4941723838998	1	950.494172	949.486896	1.9269	0.0018315	-0.89213	-0.00084796	1.0347	0.00098351	950.4937379123544	23.416	0.09654	23.403	23.379	23.476	-0.013294	273	61	1.4571344	0.035580635	1.4556149	296.05838	0	7.229187						152	5	3	NaN	NaN	NaN	0.015029	1	6944	6944		78.289	28.328	1	14981			25600	4223	14757	15175	20384	20384					0.010131945177818125
SYLQYLEYL	9	Unmodified	_SYLQYLEYL_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.30024709655	2	596.300247	1190.58594	0.81797	0.00048775	-4.501	-0.0026839	-3.683	-0.0021962	596.2973135409974	34.492	0.16885	34.491	34.443	34.612	-0.0006485	1131	118	0.94059354	0.071620524	0.93907416	381.1045	0	29.01883						242	8	2	NaN	NaN	NaN	0.02857	1	15554	15554		60.982	19.197	1	40184			25601	1249	14758	15176	20385	20385					-0.001728273079606879
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.3031241365001	2	543.303124	1084.5917	1.9797	0.0010756	0.62927	0.00034188	2.609	0.0014175	543.3034506097335	29.932	0.16895	29.932	29.908	30.077	0	1221	88	0.885486	0.053382993	0.885486	359.17767	0	21.653595						386	8	4	NaN	NaN	NaN	0.0042638	1	12180	12180		104.2	51.419	1	136530			25602	4982	14759	15177	20386	20386					0.05278315994382865
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3031241365001	2	543.303124	1084.5917	1.2868	0.00069914	1.0599	0.00057585	2.3467	0.001275	543.3039247238684	29.979	0.21717	29.973	29.901	30.118	-0.0064087	1221	88	0.885486	0.05337721	0.88396657	359.17767	0	21.651276						449	10	5	NaN	NaN	NaN	0.017558	1	11867	11867		75.089	32.771	1	125190			25603	4982	14759	15177	20387	20387					0.05278315994382865
SYLSSLSHL	9	Unmodified	_SYLSSLSHL_					0	0	0		ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ATP11B-TFRC|1|fusion;ENSG00000058063|ENST00000323116|ATP11B	ENST00000490303.5_1_3:182583321-182631816:+|nuORF	ENST00000490303.5_1_3:182583321-182631816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.7638318005	2	503.763832	1005.51311	1.4467	0.00072881	-1.0707	-0.0005394	0.37599	0.00018941	503.76325078902414	24.068	0.07235	24.068	24.044	24.116	0	1248	52	0.8689189	0.031306982	0.8689189	352.80505	0	12.711487						95	4	2	NaN	NaN	NaN	0.094712	1	8800	8800		36.586	11.625	1	12983			25604	51	14760	15178	20388	20388					0.010574636892783928
SYLSSLSHL	9	Unmodified	_SYLSSLSHL_					0	0	0		ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ATP11B-TFRC|1|fusion;ENSG00000058063|ENST00000323116|ATP11B	ENST00000490303.5_1_3:182583321-182631816:+|nuORF	ENST00000490303.5_1_3:182583321-182631816:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7638318005	2	503.763832	1005.51311	1.3189	0.00066444	0.038655	1.9473E-05	1.3576	0.00068391	503.7636546100963	24.092	0.096521	24.079	24.055	24.151	-0.012749	1248	40	0.8689189	0.02393806	0.86739945	352.80505	0	9.719513						113	5	3	NaN	NaN	NaN	0.20577	1	8633	8633		24.961	9.7856	1	12582			25605	51	14760	15178	20389	20389					0.010574636892783928
SYLTDGGN	8	Unmodified	_SYLTDGGN_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	826.3577384820001	1	826.357738	825.350462	1.4938	0.0012344	4.4454	0.0036735	5.9391	0.0049079	826.3613965436142	24.598	0.12061	24.586	24.538	24.658	-0.012394	510	46	1.316029	0.026909351	1.3145095	267.9631	0	5.4791565						104	6	2	NaN	NaN	NaN	0.6053	1	4969	4969		24.961	2.8347	1	6919.5			25606	1388	14761	15179	20390	20390					-0.06919919712709088
SYLTDGGN	8	Unmodified						0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	826.357738	825.350462	1.6518	0.0013649	3.6691	0.003032	5.3208	0.0043969	826.3608926467643	24.598	0.14474	24.598	24.574	24.719	0	516	43	1.3124412	0.02511406	1.3124412	267.2326		5.1135864	0.0062453	-0.00029687	-0.0010341	NaN	24.961	94	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7191.1			25607	1388	14761	15179							-0.06919919712709088
SYLTIHHRI	9	Unmodified	_SYLTIHHRI_					0	0	0		nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-3|ZNF12;RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK	nc|ENSG00000164631|P17014-4|ZNF12	nc|ENSG00000164631|P17014-4|ZNF12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	380.5488520675	3	380.548852	1138.62473	2.0319	0.00077325	-1.7113	-0.00065123	0.32064	0.00012202	380.54819776251776	15.652	0.21575	15.639	15.447	15.663	-0.012611	1509	28	0.70793515	0.01673305	0.7064157	430.47617	0	10.174927						104	10	2	NaN	NaN	NaN	0.31737	1	13939	13939		15.822	8.1393	1	7518.6			25608	4337	14762	15180	20391	20391					0.06095942837077928
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4622035535	1	928.462204	927.454927	1.413	0.0013119	-6.3644	-0.0059091	-4.9514	-0.0045972	928.4563460566085	22.621	0.3134	22.607	22.583	22.896	-0.01354	303	241	1.4393384	0.14285362	1.437819	292.54196	0	29.034637						763	14	5	NaN	NaN	NaN	0.062072	1	6409	6409		41.785	8.0862	1	244000			25609	1478	14763	15181	20392	20392					-0.011702179559961223
SYLVQYMQF	9	Unmodified	_SYLVQYMQF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7811672739	2	589.781167	1177.54778	1.0401	0.00061344	3.8263	0.0022567	4.8664	0.0028701	590.2873652927153	30.897	0.16891	30.897	30.849	31.018	0	1173	70	0.91489893	0.042251408	0.91489893	370.74066	0	17.121368						218	8	3	NaN	NaN	NaN	0.33629	1	15738	15738		16.584	4.5355	1	42012			25610	317	14764	15182	20393	20393					-0.033890364942863016
SYLVQYMQF	9	Unmodified	_SYLVQYMQF_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7811672739	2	589.781167	1177.54778	0.91795	0.00054139	-1.4522	-0.0008565	-0.53429	-0.00031511	589.7791619254551	30.872	0.14484	30.866	30.818	30.963	-0.0057545	1170	85	0.91673553	0.05144483	0.9152161	371.48492	0	20.846802						237	7	4	NaN	NaN	NaN	0.49672	1	15165	15165		9.746	0	1	38033			25611	317	14764	15182	20394	20394					-0.033890364942863016
SYLYGLLAF	9	Unmodified	_SYLYGLLAF_					0	0	0		GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant;nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5557100082	1	1046.55571	1045.54843	1.5462	0.0016182	7.9789	0.0083503	9.5251	0.0099685	1046.5663306733097	36.493	0.16874	36.494	36.47	36.639	0.0016747	60	127	1.582944	0.074245214	1.5814246	321.19733	0	15.065186						267	8	2	NaN	NaN	NaN	0.10956	1	10246	10246		34.439	7.7072	1	26608			25612	2026	14765	15183	20395	20395					0.027481262171022536
SYMDRQPNL	9	Unmodified	_SYMDRQPNL_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2636730125	2	562.263673	1122.51279	2.0864	0.0011731	1.4345	0.00080655	3.5208	0.0019796	562.264482405894	17.669	0.047951	17.669	17.645	17.693	0	1212	37	0.8910048	0.0220716	0.8910048	361.26303	0	8.949036						57	3	2	NaN	NaN	NaN	0.21199	1	13782	13782		24.562	11.559	1	6549.7			25613	5871	14766	15184	20396	20396					-0.04356279302214716
SYMDRQPNL	9	Unmodified						0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.263673	1122.51279	1.9419	0.0010919	-0.91204	-0.0005128	1.0299	0.00057908	562.2638753425128	17.69	0.071901	17.676	17.652	17.724	-0.013786	1215	79	0.8891654	0.04786837	0.88764596	360.51727		19.408478	0.003489	-0.0013059	-0.0016794	NaN	24.562	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8130.2			25614	5871	14766	15184							-0.04356279302214716
SYMESVVTF	9	Unmodified	_SYMESVVTF_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.4812244360999	1	1062.48122	1061.47395	2.0178	0.0021438	0.007209	7.6594E-06	2.025	0.0021515	1062.481340228441	28.243	0.12063	28.243	28.219	28.339	0	129	85	1.5422925	0.049570203	1.5422925	312.8875	0	10.0563965						186	6	3	NaN	NaN	NaN	0.056143	1	11164	11164		44.302	27.886	1	20058			25615	3313	14767	15185	20397	20397					-0.05433004656606499
SYMESVVTF	9	Unmodified	_SYMESVVTF_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.4812244360999	1	1062.48122	1061.47395	1.1679	0.0012409	0.97807	0.0010392	2.146	0.00228	1062.4821061789407	28.266	0.12061	28.257	28.233	28.354	-0.0089779	126	91	1.544062	0.05311656	1.5425426	313.2465	0	10.775879						196	6	3	NaN	NaN	NaN	0.094712	1	10916	10916		36.586	21.411	1	19608			25616	3313	14767	15185	20398	20398					-0.05433004656606499
SYMESVVTF	9	Oxidation (M)	_SYM(Oxidation (M))ESVVTF_		SYM(1)ESVVTF		SYM(50)ESVVTF	0	0	1		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.4761390581998	1	1078.47614	1077.46886	1.8759	0.0020231	-5.8313	-0.0062889	-3.9554	-0.0042658	1078.4688379380889	24.96	0.14477	24.948	24.875	25.02	-0.012394	144	76	1.533442	0.044275522	1.5319226	311.03278	0	8.98053						178	7	2	NaN	NaN	NaN	0.043119	1	11540	11540		49.833	24.872	1	16701			25617	3313	14767	15186	20399	20399		366			-0.0667730851921533
SYMFNVNDF	9	Unmodified	_SYMFNVNDF_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.7394994244501	2	568.739499	1135.46445	0.81604	0.00046411	-9.6794	-0.0055051	-8.8634	-0.0050409	568.7341367548006	33.213	0.096546	33.21	33.162	33.259	-0.0024757	1242	46	0.87260187	0.027617872	0.8710824	353.75256	0	11.196289						69	4	2	NaN	NaN	NaN	0.51576	1	13815	13815		8.962	0.67169	1	8488.6	+		25618	9390	14768	15187	20400	20400					-0.09786772942106836
SYMFNVNDF	9	Unmodified						0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.739499	1135.46445	0.81604	0.00046411	-9.6794	-0.0055051	-8.8634	-0.0050409	568.7341367548006	33.213	0.096546	33.21	33.162	33.259	-0.0024757	1242	46	0.87260187	0.027617872	0.8710824	353.75256		11.196289	0.01016	-0.0002762	0.00016098	NaN	8.962	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8488.6	+		25619	9390	14768	15187							-0.09786772942106836
SYMFVDENTF	10	Unmodified	_SYMFVDENTF_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.763171486	2	626.763171	1251.51179	1.6435	0.0010301	-1.7445	-0.0010934	-0.10097	-6.3284E-05	626.7611928079457	28.822	0.24137	28.822	28.774	29.015	0	1152	91	0.92775106	0.05508375	0.92775106	375.6913	0	22.306091						567	11	5	NaN	NaN	NaN	0.0072459	1	17807	17807		74.794	33.837	1	92034			25620	2883	14769	15188	20401	20401					-0.10390538461774668
SYMFVDENTF	10	Unmodified	_SYMFVDENTF_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.763171486	2	626.763171	1251.51179	1.008	0.0006318	-0.85347	-0.00053492	0.15457	9.6878E-05	626.7618810263532	28.821	0.24135	28.813	28.765	29.006	-0.0083504	1149	85	0.92958635	0.05141151	0.9280669	376.43448	0	20.819						537	11	5	NaN	NaN	NaN	0.026551	1	17049	17049		60.984	36.422	1	96513			25621	2883	14769	15188	20402	20402					-0.10390538461774668
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7524098344501	2	541.75241	1081.49027	1.5934	0.00086322	-2.1421	-0.0011605	-0.54875	-0.00029729	541.7513501885801	27.615	0.28966	27.615	27.374	27.664	0	1230	88	0.8799654	0.053400338	0.8799654	356.9512	0	21.661407						380	13	3	NaN	NaN	NaN	0.074859	1	12040	12040		39.459	22.875	1	68987			25622	4706	14770	15189	20403	20403					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7524098344501	2	541.75241	1081.49027	1.6685	0.00090392	-0.33644	-0.00018227	1.3321	0.00072165	541.7525438082247	27.929	0.12064	27.929	27.905	28.026	0	1233	46	0.87812483	0.027614892	0.87812483	356.2046	0	11.201752						131	6	2	NaN	NaN	NaN	0.33629	1	12041	12041		16.584	1.5713	1	15403			25623	4706	14770	15189	20404	20404					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.7524098344501	2	541.75241	1081.49027	2.3075	0.0012501	-0.54039	-0.00029276	1.7671	0.00095734	541.7519618247401	26.698	0.82096	26.698	26.505	27.326	0	1218	157	0.8873258	0.095757544	0.8873258	359.9369	0	38.843292						2043	35	6	NaN	NaN	NaN	8.7755E-05	1	12042	12042		123.66	87.071	1	2165000			25624	4706	14770	15189	20405	20405					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.4975432023	1	1082.49754	1081.49027	1.4649	0.0015857	0.34513	0.0003736	1.81	0.0019593	1082.497927279958	26.698	0.1453	26.698	26.65	26.795	0	87	76	1.5670487	0.044177175	1.5670487	317.83435	0	8.960175						309	7	4	NaN	NaN	NaN	0.023828	1	12043	12043		67.154	40.423	1	45707			25625	4706	14770	15189	20406	20406					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7524098344501	2	541.75241	1081.49027	2.2422	0.0012147	-1.0608	-0.00057471	1.1814	0.00064003	541.7516309637966	26.722	0.53096	26.711	26.59	27.121	-0.010645	1215	157	0.8891654	0.095767915	0.88764596	360.6831	0	38.847504						1676	23	6	NaN	NaN	NaN	1.2958E-07	1	11721	11721		136.74	104.29	1	2185600			25626	4706	14770	15189	20407	20407					-0.047218786998428186
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.4975432023	1	1082.49754	1081.49027	1.3717	0.0014849	0.19903	0.00021545	1.5707	0.0017003	1082.4976354398502	26.722	0.1448	26.711	26.663	26.808	-0.010645	84	79	1.5688156	0.045946717	1.5672961	318.19272	0	9.319061						291	7	3	NaN	NaN	NaN	0.013281	1	11722	11722		82.96	48.521	1	43858			25627	4706	14770	15189	20408	20408					-0.047218786998428186
SYMGHFDLL	9	Unmodified						0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.75241	1081.49027	1.0846	0.00058758	0.31972	0.00017321	1.4043	0.00076079	541.752554900692	27.639	0.16892	27.629	27.46	27.629	-0.009552	1230	91	0.8799654	0.055256605	0.878446	356.9512		22.414398	0.0068869	0.0017931	-0.00075972	NaN	39.459	222	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39218			25628	4706	14770	15189							-0.047218786998428186
SYMGHFDLL	9	Unmodified						0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.75241	1081.49027	1.6013	0.00086751	1.2691	0.00068755	2.8704	0.0015551	542.2540905415333	26.456	0.096535	26.445	26.373	26.469	-0.011137	1212	40	0.8910048	0.023912191	0.88948536	361.42923		9.699799	-0.12638	0.001798	0.0010798	NaN	123.66	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8747.8			25629	4706	14770	15189							-0.047218786998428186
SYMGHFDLL	9	Unmodified						0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.75241	1081.49027	1.5789	0.00085537	1.9372	0.0010495	3.5161	0.0019048	541.7537664408444	28.314	0.12061	28.305	28.233	28.354	-0.0089779	1224	34	0.883646	0.020242155	0.88212657	358.44418		8.21106	0.18819	0.0018279	0.0020009	NaN	16.584	66	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4418.1			25630	4706	14770	15189							-0.047218786998428186
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(100)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7498671455	2	549.749867	1097.48518	2.008	0.0011039	-0.99596	-0.00054753	1.0121	0.00055638	549.748985874272	24.14	0.50666	24.14	24.044	24.55	0	1245	163	0.87076044	0.09947282	0.87076044	353.15253	0	40.342987						1606	22	6	NaN	NaN	NaN	0.0040938	1	12727	12727		104.71	73.15	1	2752500			25631	4706	14770	15190	20409	20409		502			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(110)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7498671455	2	549.749867	1097.48518	2.5345	0.0013933	-0.92979	-0.00051115	1.6047	0.0008822	549.7491996717429	24.164	0.50675	24.151	24.055	24.561	-0.012749	1245	163	0.87076044	0.099429786	0.869241	353.15253	0	40.32553						1572	22	7	NaN	NaN	NaN	0.0023856	1	12392	12392		109.86	73.271	1	2580600			25632	4706	14770	15190	20410	20410		502			-0.059661825624516496
SYMLVNENRF	10	Unmodified	_SYMLVNENRF_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8057050026999	2	636.805705	1271.59686	1.9877	0.0012658	-0.85851	-0.00054671	1.1292	0.0007191	636.8052088062211	22.139	0.16887	22.139	22.115	22.284	0	1134	73	0.9387595	0.04401946	0.9387595	380.08365	0	17.82254						318	8	5	NaN	NaN	NaN	0.011581	1	18260	18260		69.233	41.937	1	73302			25633	5257	14771	15191	20411	20411					-0.028077482053504355
SYMLVNENRF	10	Unmodified	_SYMLVNENRF_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.8057050026999	2	636.805705	1271.59686	1.5417	0.00098176	0.054941	3.4987E-05	1.5966	0.0010167	636.804944331065	22.163	0.24118	22.149	22.077	22.318	-0.013731	1134	70	0.9387595	0.04219216	0.93724006	380.08362	0	17.082703						470	11	5	NaN	NaN	NaN	0.0094358	1	17448	17448		71.985	55.127	1	81394			25634	5257	14771	15191	20412	20412					-0.028077482053504355
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(49)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.8031623137499	2	644.803162	1287.59177	1.905	0.0012284	-1.1455	-0.00073865	0.75949	0.00048972	644.8024942686765	20.189	0.048046	20.189	20.141	20.189	0	1152	46	0.92775106	0.027528465	0.92775106	375.57642	0	11.144226						111	3	4	NaN	NaN	NaN	0.075094	1	18555	18555		49.394	35.445	1	26375			25635	5257	14771	15192	20413	20413		546			-0.040520520679592664
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(92)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.8031623137499	2	644.803162	1287.59177	1.9485	0.0012564	-1.3167	-0.00084901	0.63175	0.00040735	644.8026864813862	20.188	0.048174	20.174	20.15	20.198	-0.014141	1152	46	0.92775106	0.027531445	0.9262317	375.57642	0	11.145416						130	3	4	NaN	NaN	NaN	0.00039182	1	17727	17727		91.973	66.172	1	30288			25636	5257	14771	15192	20414	20414		546			-0.040520520679592664
SYMVLAPVF	9	Unmodified	_SYMVLAPVF_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;ENST00000569969.5_2_16:28986191-28992937:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5328660761	1	1026.53287	1025.52559	1.2352	0.0012679	0.90953	0.00093366	2.1447	0.0022016	1026.5341214069501	33.576	0.12057	33.576	33.552	33.673	0	102	79	1.5582114	0.045995355	1.5582114	316.2592	0	9.335358						170	6	3	NaN	NaN	NaN	0.27442	1	9600	9600		20.555	9.007	1	16833			25637	4685	14772	15193	20415	20415					0.013847838279616553
SYMVLAPVF	9	Unmodified	_SYMVLAPVF_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;ENST00000569969.5_2_16:28986191-28992937:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.5328660761	1	1026.53287	1025.52559	0.6791	0.00069711	2.0196	0.0020732	2.6987	0.0027703	1026.5348860277304	33.575	0.096539	33.573	33.549	33.645	-0.0018463	102	64	1.5582114	0.037136316	1.556692	316.2592	0	7.5372925						139	5	3	NaN	NaN	NaN	0.049695	1	9412	9412		47.04	23.706	1	15694			25638	4685	14772	15193	20416	20416					0.013847838279616553
SYMWTINNF	9	Unmodified	_SYMWTINNF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.26314169625	2	588.263142	1174.51173	1.4419	0.00084824	-1.8847	-0.0011087	-0.44274	-0.00026045	588.2621284793514	30.97	0.33784	30.97	30.849	31.187	0	1221	103	0.885486	0.062529504	0.885486	358.83255	0	25.339325						698	15	3	NaN	NaN	NaN	3.7692E-08	1	15623	15623		140.15	102.84	1	330670			25639	2287	14773	15194	20417	20417					-0.06854493671130513
SYMWTINNF	9	Unmodified	_SYMWTINNF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.26314169625	2	588.263142	1174.51173	1.5193	0.00089373	-1.5633	-0.00091962	-0.043998	-2.5883E-05	588.2622959334642	30.969	0.36205	30.964	30.843	31.205	-0.0050716	1218	109	0.8873258	0.0661934	0.8858064	359.5781	0	26.824097						789	16	3	NaN	NaN	NaN	3.7692E-08	1	15066	15066		140.15	99.992	1	347390			25640	2287	14773	15194	20418	20418					-0.06854493671130513
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(96)WTINNF	0	0	1		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.2605990073	2	596.260599	1190.50665	1.7193	0.0010251	2.2663	0.0013513	3.9856	0.0023764	596.2610000062076	28.629	0.33785	28.629	28.508	28.846	0	1206	124	0.894683	0.07536656	0.894683	362.50293	0	30.536621						1074	15	5	NaN	NaN	NaN	0.0084155	1	16157	16157		95.62	69.819	1	399820			25641	2287	14773	15195	20419	20419		264			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(130)WTINNF	0	0	1		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2605990073	2	596.260599	1190.50665	1.2816	0.00076414	0.98199	0.00058552	2.2635	0.0013497	596.2605051290795	28.628	0.36192	28.62	28.499	28.861	-0.0083504	1206	118	0.894683	0.0716902	0.89316356	362.50296	0	29.047058						910	16	5	NaN	NaN	NaN	3.9799E-05	1	15543	15543		126.58	90.344	1	389000			25642	2287	14773	15195	20420	20420		264			-0.08098797533739344
SYMWTINNFSF	11	Unmodified	_SYMWTINNFSF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3133628593	2	705.313363	1408.61217	0.94875	0.00066916	-1.6575	-0.001169	-0.70872	-0.00049987	705.3122575221781	34.734	0.14469	34.734	34.71	34.855	0	1068	43	0.97906286	0.025617182	0.97906286	395.98706	0	10.361023						218	7	4	NaN	NaN	NaN	2.3748E-09	1	20129	20129		103.78	89.359	1	22472			25643	2287	14774	15196	20421	20421					-0.07578881408130655
SYMWTINNFSF	11	Unmodified	_SYMWTINNFSF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3133628593	2	705.313363	1408.61217	0.91858	0.00064789	-1.2258	-0.00086459	-0.30724	-0.0002167	705.3124016414703	34.757	0.16864	34.756	34.708	34.877	-0.0006485	1065	40	0.9808926	0.023786128	0.97937316	396.72708	0	9.620422						210	8	4	NaN	NaN	NaN	0.051747	1	19179	19179		49.394	36.824	1	22059			25644	2287	14774	15196	20422	20422					-0.07578881408130655
SYMWTINNFSF	11	Oxidation (M)	_SYM(Oxidation (M))WTINNFSF_		SYM(1)WTINNFSF		SYM(110)WTINNFSF	0	0	1		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.31082017035	2	713.31082	1424.60709	0.91805	0.00065486	-2.3166	-0.0016525	-1.3985	-0.0009976	713.3088223002364	32.78	0.16889	32.78	32.732	32.9	0	1062	61	0.9827221	0.036596	0.9827221	397.42365	0	14.799805						278	8	4	NaN	NaN	NaN	5.357E-12	1	20246	20246		114.78	87.825	1	37823			25645	2287	14774	15197	20423	20423		264			-0.08823185270762224
SYMWTINNFSF	11	Oxidation (M)	_SYM(Oxidation (M))WTINNFSF_		SYM(1)WTINNFSF		SYM(78)WTINNFSF	0	0	1		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.31082017035	2	713.31082	1424.60709	0.8301	0.00059212	-2.0669	-0.0014744	-1.2368	-0.00088224	713.3090379068625	32.779	0.21716	32.776	32.751	32.969	-0.0031052	1059	55	0.98455137	0.032936394	0.9830319	398.16345	0	13.319855						350	10	5	NaN	NaN	NaN	0.0015438	1	19288	19288		77.516	59.546	1	38413			25646	2287	14774	15197	20424	20424		264			-0.08823185270762224
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.7671027709499	2	596.767103	1191.51965	1.3324	0.00079511	0.47305	0.0002823	1.8054	0.0010774	596.7665259350017	21.609	0.096386	21.609	21.585	21.681	0	1179	61	0.9112251	0.036758184	0.9112251	369.20178	0	14.893341						189	5	3	NaN	NaN	NaN	0.34188	1	16181	16181		16.226	5.9821	1	23862			25647	953	14775	15198	20425	20425					-0.06844643150020602
SYNEHWNYL	9	Unmodified	_SYNEHWNYL_					0	0	0		ENSG00000111321|ENST00000228918|LTBR;nc|ENSG00000111321|P36941-2|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENSG00000111321|ENST00000228918|LTBR	ENSG00000111321|ENST00000228918|LTBR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.26726994645	2	613.26727	1224.51999	1.4703	0.00090171	-1.6933	-0.0010384	-0.22293	-0.00013672	613.2664382462949	21.994	0.28934	21.994	21.946	22.236	0	1185	85	0.90755045	0.051422596	0.90755045	367.5995	0	20.828522						546	13	4	NaN	NaN	NaN	0.0050453	1	17079	17079		102.5	74.707	1	167440			25648	1800	14776	15199	20426	20426					-0.08329223430155253
SYNEHWNYL	9	Unmodified	_SYNEHWNYL_					0	0	0		ENSG00000111321|ENST00000228918|LTBR;nc|ENSG00000111321|P36941-2|LTBR;ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENSG00000111321|ENST00000228918|LTBR	ENSG00000111321|ENST00000228918|LTBR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.26726994645	2	613.26727	1224.51999	1.0244	0.00062825	-1.028	-0.00063047	-0.0036103	-2.2141E-06	613.2669374455786	21.994	0.40966	21.98	21.932	22.342	-0.013897	1185	76	0.90755045	0.045935333	0.906031	367.5995	0	18.605927						605	18	5	NaN	NaN	NaN	0.0080618	1	16395	16395		96.341	67.446	1	170480			25649	1800	14776	15199	20427	20427					-0.08329223430155253
SYNGKLYVF	9	Unmodified	_SYNGKLYVF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.78202455365	2	545.782025	1089.5495	1.9862	0.001084	0.73217	0.00039961	2.7183	0.0014836	545.7823750258719	23.103	0.12058	23.103	23.103	23.224	0	1221	124	0.885486	0.0755052	0.885486	359.15717	0	30.625244						254	6	2	NaN	NaN	NaN	0.10945	1	12375	12375		34.454	12.328	1	64235			25650	4924	14777	15200	20428	20428					0.008303405859805935
SYNGKLYVF	9	Unmodified	_SYNGKLYVF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.78202455365	2	545.782025	1089.5495	1.7345	0.00094668	0.46776	0.0002553	2.2023	0.001202	545.7821193847886	23.151	0.14481	23.138	23.138	23.283	-0.013294	1221	127	0.885486	0.07734263	0.88396657	359.15717	0	31.370514						292	7	2	NaN	NaN	NaN	0.084037	1	12067	12067		38.131	21.547	1	60141			25651	4924	14777	15200	20429	20429					0.008303405859805935
SYNGQVGWF	9	Unmodified	_SYNGQVGWF_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	353.162774742	3	353.162775	1056.46649	1.3181	0.0004655	8.2643	0.0029186	9.5824	0.0033841	353.1658660970946	20.742	0.14443	20.728	20.704	20.849	-0.014088	1503	64	0.711653	0.039031148	0.71013355	433.1385	0	23.755798						168	7	2	NaN	NaN	NaN	0.56671	1	10701	10701		3.9281	0.35833	1	24089			25652	8073	14778	15201	20430	20430					-0.059479761420107025
SYNLLLEYF	9	Unmodified	_SYNLLLEYF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2949647534	2	581.294965	1160.57538	2.4521	0.0014254	-4.0899	-0.0023775	-1.6378	-0.00095205	581.2925768056332	26.143	0.19306	26.143	26.094	26.288	0	1203	76	0.8965218	0.045980036	0.8965218	363.35532	0	18.635468						410	9	3	NaN	NaN	NaN	0.18779	1	15167	15167		26.115	0	1	90726	+		25653	10046	14779	15202	20431	20431					0.0015119003760446503
SYNLLLEYF	9	Unmodified						0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.294965	1160.57538	2.4521	0.0014254	-4.0899	-0.0023775	-1.6378	-0.00095205	581.2925768056332	26.143	0.19306	26.143	26.094	26.288	0	1203	76	0.8965218	0.045980036	0.8965218	363.35532		18.635468	-0.11496	-0.00084342	-0.0019979	NaN	26.115	410	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90726	+		25654	10046	14779	15202							0.0015119003760446503
SYNLLLEYF	9	Unmodified						0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.294965	1160.57538	2.3517	0.001367	-1.2227	-0.00071077	1.1289	0.00065624	581.2955097470328	26.384	0.024143	26.373	26.373	26.397	-0.011137	1194	37	0.902037	0.02205491	0.9005176	365.59058		8.938721	0.11496	0.00249	0.0019979	NaN	26.115	40	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3243.3	+		25655	10046	14779	15202							0.0015119003760446503
SYNLNYHKL	9	Unmodified	_SYNLNYHKL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2958304206501	2	576.29583	1150.57711	1.8145	0.0010457	-0.17578	-0.0001013	1.6387	0.00094436	576.2964791501616	16.683	0.11984	16.669	16.645	16.765	-0.013294	1158	31	0.92408	0.018359244	0.9225606	374.5627	0	7.441681						96	6	3	NaN	NaN	NaN	0.089764	1	14330	14330		37.302	15.531	1	7124.9			25656	4767	14780	15203	20432	20432					0.007842438462375867
SYNLNYHKL	9	Unmodified						0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.29583	1150.57711	1.8909	0.0010897	-2.3859	-0.001375	-0.495	-0.00028527	576.2961971199342	16.614	0.04793	16.614	16.614	16.662	0	1158	34	0.92408	0.020194113	0.92408	374.5627		8.185394	-0.027791	-0.0013661	0.00075972	NaN	37.302	59	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4507.4			25657	4767	14780	15203							0.007842438462375867
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2765834225	2	613.276583	1224.53861	1.5189	0.00093154	-1.3804	-0.00084655	0.13858	8.499E-05	613.2756022831085	29.063	0.53092	29.063	28.943	29.474	0	1164	79	0.9204082	0.047739267	0.9204082	372.8074	0	19.336578						925	23	4	NaN	NaN	NaN	5.7913E-18	1	17084	17084		158.81	105.67	1	1027500			25658	4995;6011	14781	15204	20433	20433					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2765834225	2	613.276583	1224.53861	0.91256	0.00055965	-0.48252	-0.00029592	0.43004	0.00026373	613.7763081062416	29.642	0.096539	29.642	29.57	29.667	0	1173	52	0.91489893	0.031229258	0.91489893	370.5759	0	12.649292						114	5	3	NaN	NaN	NaN	0.23112	1	17085	17085		23.334	15.057	1	11390			25659	4995;6011	14781	15204	20434	20434					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2765834225	2	613.276583	1224.53861	1.3503	0.0008281	-0.54746	-0.00033574	0.80283	0.00049236	613.7773201165876	30.198	0.38615	30.198	29.884	30.27	0	1200	115	0.89836043	0.06980294	0.89836043	363.87704	0	28.273376						546	17	2	NaN	NaN	NaN	0.12328	1	17087	17087		32.453	17.599	1	71872			25660	4995;6011	14781	15204	20435	20435					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2765834225	2	613.276583	1224.53861	0.6058	0.00037152	-1.3943	-0.00085507	-0.78848	-0.00048355	613.275941927781	29.4	0.19302	29.393	29.344	29.537	-0.0077209	1167	73	0.91857195	0.044090807	0.9170525	372.06363	0	17.858765						197	9	2	NaN	NaN	NaN	0.47587	1	16400	16400		10.605	0.36125	1	33618			25661	4995;6011	14781	15204	20436	20436					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2765834225	2	613.276583	1224.53861	0.52783	0.00032371	0.51247	0.00031428	1.0403	0.00063799	613.276792169348	30.221	0.096542	30.214	30.166	30.263	-0.0064106	1149	97	0.92958635	0.05876869	0.9280669	376.52496	0	23.804016						219	5	2	NaN	NaN	NaN	0.084037	1	16401	16401		38.131	20.332	1	38551			25662	4995;6011	14781	15204	20437	20437					-0.06467385059931985
SYNNFFRMF	9	Unmodified	_SYNNFFRMF_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2765834225	2	613.276583	1224.53861	1.4928	0.00091547	-0.41024	-0.00025159	1.0825	0.00066388	613.2759192427942	29.087	0.41025	29.079	28.934	29.344	-0.0077229	1164	100	0.9204082	0.060595453	0.91888875	372.8074	0	24.543945						1115	18	5	NaN	NaN	NaN	2.6074E-07	1	16402	16402		131.88	88.882	1	1068000			25663	4995;6011	14781	15204	20438	20438					-0.06467385059931985
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(130)F	0	0	1		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.27404073355	2	621.274041	1240.53353	2.5127	0.0015611	-1.1621	-0.00072201	1.3505	0.00083906	621.2728300272908	25.419	0.43426	25.419	25.322	25.757	0	1161	163	0.9222442	0.09906536	0.9222442	373.49738	0	40.12027						1150	19	3	NaN	NaN	NaN	2.6074E-07	1	17542	17542		131.88	81.046	1	2398600			25664	4995;6011	14781	15205	20439	20439		524			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(160)F	0	0	1		ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000221914|P63151-2|PPP2R2A;ENSG00000221914|ENST00000380737|PPP2R2A	ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000221914|P63151-2|PPP2R2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.27404073355	2	621.274041	1240.53353	2.5108	0.0015599	-0.62643	-0.00038919	1.8843	0.0011707	621.2732816105613	25.419	0.53082	25.407	25.334	25.865	-0.012011	1161	178	0.9222442	0.10826737	0.92072475	373.49738	0	43.846954						1189	23	3	NaN	NaN	NaN	5.7913E-18	1	16798	16798		158.81	102.85	1	2412600			25665	4995;6011	14781	15205	20440	20440		524			-0.07711688922563553
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.80622793145	2	595.806228	1189.5979	1.2123	0.0007223	0.65223	0.0003886	1.8645	0.0011109	595.8066633084238	26.988	0.16893	26.988	26.94	27.109	0	1170	76	0.91673553	0.04592544	0.91673553	371.44135	0	18.608002						243	8	2	NaN	NaN	NaN	0.14414	1	16145	16145		35.523	17.724	1	109840			25666	2315	14782	15206	20441	20441					0.010687894352258809
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.80622793145	2	595.806228	1189.5979	0.85244	0.00050789	1.9686	0.0011729	2.821	0.0016808	595.8076206465041	27.011	0.12069	27.001	26.929	27.049	-0.010126	1170	70	0.91673553	0.04224682	0.9152161	371.4413	0	17.117523						174	6	2	NaN	NaN	NaN	0.051747	1	15531	15531		49.394	19.359	1	78501			25667	2315	14782	15206	20442	20442					0.010687894352258809
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.32439089485	2	581.324391	1160.63423	2.3445	0.0013629	-1.6176	-0.00094037	0.72688	0.00042255	581.3234403086738	28.581	0.26544	28.581	28.532	28.798	0	1161	106	0.9222442	0.064288676	0.9222442	373.78024	0	26.055847						972	12	5	NaN	NaN	NaN	0.0021374	1	15183	15183		110.61	57.465	1	554580			25668	701	14783	15207	20443	20443					0.06033711122586283
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.32439089485	2	581.324391	1160.63423	1.8597	0.0010811	-0.87762	-0.00051018	0.98206	0.00057089	581.3239551884441	28.604	0.28955	28.596	28.547	28.837	-0.0083504	1158	106	0.92408	0.064288676	0.9225606	374.52426	0	26.055847						986	13	5	NaN	NaN	NaN	0.010404	1	14668	14668		91.563	58.138	1	496620			25669	701	14783	15207	20444	20444					0.06033711122586283
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4989234107998	1	1105.49892	1104.49165	1.6126	0.0017827	-0.006993	-7.7307E-06	1.6056	0.001775	1105.4988109526237	32.997	0.31373	32.997	32.949	33.262	0	111	151	1.5529068	0.08848095	1.5529068	314.88336	0	17.941315						892	14	3	NaN	NaN	NaN	0.0062755	1	13019	13019		99.986	52.504	1	349770			25670	6407	14784	15208	20445	20445					-0.05641921339451983
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4989234107998	1	1105.49892	1104.49165	1.7223	0.001904	0.97427	0.0010771	2.6966	0.0029811	1105.4997564321893	34.469	0.048267	34.469	34.469	34.517	0	108	55	1.5546752	0.031829476	1.5546752	315.24194	0	6.454071						78	3	2	NaN	NaN	NaN	0.16171	1	13022	13022		27.789	15.74	1	7670.6			25671	6407	14784	15208	20446	20446					-0.05641921339451983
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4989234107998	1	1105.49892	1104.49165	1.8275	0.0020203	0.9243	0.0010218	2.7518	0.0030421	1106.5021186540564	34.565	0.096489	34.565	34.541	34.638	0	111	49	1.5529068	0.028295875	1.5529068	314.88336	0	5.737549						85	5	2	NaN	NaN	NaN	0.074859	1	13023	13023		39.459	20.34	1	6175.4			25672	6407	14784	15208	20447	20447					-0.05641921339451983
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4989234107998	1	1105.49892	1104.49165	1.5473	0.0017105	1.4479	0.0016007	2.9952	0.0033112	1105.5007948701832	34.372	0.12052	34.372	34.3	34.421	0	108	73	1.5546752	0.042443752	1.5546752	315.24194	0	8.606354						157	6	2	NaN	NaN	NaN	0.042816	1	13024	13024		49.961	32.162	1	14313			25673	6407	14784	15208	20448	20448					-0.05641921339451983
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.4989234107998	1	1105.49892	1104.49165	1.5446	0.0017076	0.18075	0.00019981	1.7254	0.0019074	1105.4990238306916	33.02	0.41001	33.018	32.921	33.331	-0.0024796	108	127	1.5546752	0.07430029	1.5531558	315.24194	0	15.065887						949	18	3	NaN	NaN	NaN	2.9468E-07	1	12676	12676		130.62	72.02	1	347400			25674	6407	14784	15208	20449	20449					-0.05641921339451983
SYPAFWTSF	9	Unmodified	_SYPAFWTSF_					0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.4989234107998	1	1105.49892	1104.49165	1.2366	0.0013671	1.7769	0.0019643	3.0135	0.0033314	1105.5008795077038	34.371	0.16861	34.37	34.25	34.419	-0.00064468	105	55	1.5564433	0.03182614	1.5549239	315.6005	0	6.453369						181	8	2	NaN	NaN	NaN	0.31737	1	12679	12679		17.799	5.2111	1	16043			25675	6407	14784	15208	20450	20450					-0.05641921339451983
SYPAFWTSF	9	Unmodified						0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1105.49892	1104.49165	1.6942	0.0018729	-0.12973	-0.00014341	1.5644	0.0017295	1105.5015542893188	34.66	0.1205	34.66	34.66	34.78	-0.00064468	102	55	1.5582114	0.031832814	1.556692	315.95898		6.454773	0.047242	-0.00068182	0.0018926	NaN	39.459	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5230.6			25676	6407	14784	15208							-0.05641921339451983
SYPAFWTSF	9	Unmodified						0	0	0		ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	ENST00000299505.6_1_19:34791118-34791184:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1105.49892	1104.49165	1.4023	0.0015503	0.089879	9.9361E-05	1.4922	0.0016496	1105.4994788739057	34.492	0.07235	34.491	34.467	34.539	-0.0006485	105	52	1.5564433	0.030056357	1.5549239	315.6005		6.0945435	0.011107	-0.00063448	0.00012439	NaN	27.789	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9192.2			25677	6407	14784	15208							-0.05641921339451983
SYPAKLSFI	9	Unmodified	_SYPAKLSFI_					0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.28694275605	2	513.286943	1024.55933	1.7808	0.00091408	-0.99584	-0.00051115	0.785	0.00040293	513.2864921172844	24.478	0.21704	24.478	24.43	24.647	0	1272	85	0.854179	0.051600754	0.854179	346.73322	0	20.946045						371	10	4	NaN	NaN	NaN	0.061945	1	9563	9563		41.839	16.038	1	93948			25678	7853	14785	15209	20451	20451					0.04803528591378381
SYPAKLSFI	9	Unmodified	_SYPAKLSFI_					0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.28694275605	2	513.286943	1024.55933	1.2184	0.00062538	-0.050406	-2.5873E-05	1.168	0.00059951	513.2868175250537	24.478	0.19304	24.465	24.417	24.61	-0.012747	1275	82	0.85233563	0.049755156	0.8508162	345.98492	0	20.1969						348	9	3	NaN	NaN	NaN	0.12104	1	9379	9379		32.778	14.808	1	85082			25679	7853	14785	15209	20452	20452					0.04803528591378381
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7685828274	2	526.768583	1051.52261	1.0742	0.00056584	-2.0864	-0.001099	-1.0122	-0.00053319	526.7669956247136	32.78	0.096497	32.78	32.756	32.852	0	1272	37	0.854179	0.022119343	0.854179	346.61533	0	8.975769						114	5	3	NaN	NaN	NaN	0.04947	1	10684	10684		47.136	20.404	1	10582			25680	3427	14786	15210	20453	20453					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5298891881998	1	1052.52989	1051.52261	2.2762	0.0023958	0.32071	0.00033756	2.5969	0.0027334	1052.5305615678892	32.804	0.36201	32.804	32.732	33.094	0	105	178	1.5564433	0.10447943	1.5564433	315.7967	0	21.198517						887	16	2	NaN	NaN	NaN	0.0094682	1	10688	10688		93.472	25.363	1	493590			25681	3427	14786	15210	20454	20454					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5298891881998	1	1052.52989	1051.52261	1.0345	0.0010889	-0.52502	-0.0005526	0.50951	0.00053627	1053.5312229646765	33.72	0.072392	33.718	33.67	33.742	-0.0018463	108	58	1.5546752	0.033603072	1.5531558	315.43793	0	6.8179626						121	4	3	NaN	NaN	NaN	0.074859	1	10469	10469		39.459	17.332	1	8842.4			25682	3427	14786	15210	20455	20455					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7685828274	2	526.768583	1051.52261	0.84779	0.00044659	-0.18714	-9.8581E-05	0.66065	0.00034801	526.7678232313884	32.803	0.14476	32.8	32.751	32.896	-0.0031052	1269	40	0.8560222	0.023961365	0.85450274	347.36325	0	9.723236						117	7	2	NaN	NaN	NaN	0.16171	1	10470	10470		27.789	10.009	1	13598			25683	3427	14786	15210	20456	20456					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5298891881998	1	1052.52989	1051.52261	1.8506	0.0019478	0.0020963	2.2064E-06	1.8527	0.00195	1052.5302167447662	32.803	0.38594	32.8	32.679	33.065	-0.0031052	102	163	1.5582114	0.09559989	1.556692	316.15543	0	19.396881						1203	17	5	NaN	NaN	NaN	0.00020136	1	10472	10472		116.74	42.404	1	488740			25684	3427	14786	15210	20457	20457					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5298891881998	1	1052.52989	1051.52261	1.1896	0.0012521	1.4159	0.0014903	2.6056	0.0027424	1053.5352681723834	33.816	0.096535	33.814	33.79	33.887	-0.0018463	102	43	1.5582114	0.024756193	1.556692	316.1554	0	5.022949						76	5	2	NaN	NaN	NaN	0.14301	1	10473	10473		29.598	0.70274	1	7282.1			25685	3427	14786	15210	20458	20458					-0.0010876802521124773
SYPDLLPTF	9	Unmodified						0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.52989	1051.52261	1.3765	0.0014489	0.94213	0.00099162	2.3187	0.0024405	1052.531967045607	33.721	0.16888	33.721	33.576	33.745	0	108	64	1.5546752	0.037144184	1.5546752	315.43793		7.536438	0.0015528	0.00068573	0.00075972	NaN	39.459	128	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10993			25686	3427	14786	15210							-0.0010876802521124773
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2692813191501	2	553.269281	1104.52401	1.9705	0.0010902	-0.26924	-0.00014896	1.7013	0.00094126	553.2689862616343	25.998	0.21723	25.998	25.95	26.167	0	1191	82	0.90387505	0.049642324	0.90387505	366.55377	0	20.131744						325	10	2	NaN	NaN	NaN	0.094712	1	13032	13032		36.586	8.7976	1	135050			25687	616	14787	15211	20459	20459					-0.02407133936435457
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2692813191501	2	553.269281	1104.52401	2.2847	0.0012641	-0.62778	-0.00034733	1.6569	0.00091674	553.2686966996009	26.022	0.26548	26.011	25.938	26.204	-0.011135	1188	118	0.90571284	0.07175994	0.9041934	367.29907	0	29.101196						364	12	2	NaN	NaN	NaN	0.03623	1	12688	12688		52.758	26.643	1	139250			25688	616	14787	15211	20460	20460					-0.02407133936435457
SYPELVKMVW	10	Oxidation (M)	_SYPELVKM(Oxidation (M))VW_		SYPELVKM(1)VW		SYPELVKM(44)VW	0	0	1		ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	ENSG00000172244|ENST00000306862|C5orf34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3231992641	2	634.323199	1266.63185	2.007	0.0012731	-1.5733	-0.00099798	0.43375	0.00027514	634.3225235597387	25.515	0.28953	25.503	25.383	25.672	-0.0116	1134	82	0.9387595	0.049503207	0.93724006	380.09964	0	20.04364						332	13	4	NaN	NaN	NaN	0.1159	1	17346	17346		43.776	23.088	1	43592			25689	4831	14788	15212	20461	20461		510			0.009194946026354955
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.4985890598	1	1108.49859	1107.49131	1.842	0.0020419	0.61334	0.00067989	2.4554	0.0027218	1108.499498543883	32.925	0.31377	32.925	32.852	33.166	0	90	157	1.5652816	0.09199095	1.5652816	317.38202	0	18.652405						1362	14	5	NaN	NaN	NaN	0.00017726	1	13158	13158		118.2	43.872	1	515980			25690	401	14789	15213	20462	20462					-0.05813341059274535
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.4985890598	1	1108.49859	1107.49131	1.51	0.0016739	0.55875	0.00061938	2.0688	0.0022932	1108.4991092215896	32.924	0.50653	32.921	32.849	33.355	-0.0024757	87	163	1.5670487	0.09552896	1.5655292	317.7403	0	19.369812						1443	22	5	NaN	NaN	NaN	0.00017726	1	12788	12788		118.2	56.933	1	508970			25691	401	14789	15213	20463	20463					-0.05813341059274535
SYPLNSYEL	9	Unmodified	_SYPLNSYEL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5149674054999	1	1085.51497	1084.50769	2.1052	0.0022852	-0.66753	-0.00072461	1.4377	0.0015606	1085.5146840612997	25.708	0.072359	25.708	25.684	25.757	0	123	106	1.5458313	0.061861157	1.5458313	313.52	0	12.546478						210	4	2	NaN	NaN	NaN	0.026443	1	12158	12158		63.765	24.306	1	19105			25692	5010	14790	15214	20464	20464					-0.03118259893199138
SYPLNSYEL	9	Unmodified	_SYPLNSYEL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5149674054999	1	1085.51497	1084.50769	1.977	0.002146	-0.18878	-0.00020492	1.7882	0.0019411	1085.5141013960986	25.708	0.12063	25.696	25.648	25.769	-0.0116	123	100	1.5458313	0.058326244	1.5443119	313.51996	0	11.829498						225	6	4	NaN	NaN	NaN	2.553E-07	1	11841	11841		132.08	71.095	1	16045			25693	5010	14790	15214	20465	20465					-0.03118259893199138
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.28694275605	2	543.286943	1084.55933	1.5361	0.00083453	-2.188	-0.0011887	-0.65189	-0.00035416	543.2856073442426	36.374	0.26525	36.374	36.302	36.567	0	1221	64	0.885486	0.038648307	0.885486	359.1778	0	15.676819						465	12	4	NaN	NaN	NaN	0.02857	1	12170	12170		60.982	25.685	1	114400			25694	428	14791	15215	20466	20466					0.020435285913663392
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.5666090455	1	1085.56661	1084.55933	1.8003	0.0019543	-0.47482	-0.00051545	1.3255	0.0014389	1085.5656367390884	36.374	0.31346	36.374	36.302	36.615	0	69	106	1.5776473	0.061848044	1.5776473	319.9726	0	12.543793						625	14	4	NaN	NaN	NaN	0.01966	1	12173	12173		72.428	24.947	1	159320			25695	428	14791	15215	20467	20467					0.020435285913663392
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.28694275605	2	543.286943	1084.55933	1.6707	0.00090767	-0.9648	-0.00052416	0.7059	0.00038351	543.2866666383651	36.372	0.14444	36.374	36.326	36.47	0.0016747	1218	64	0.8873258	0.038644075	0.8858064	359.92407	0	15.67511						371	7	4	NaN	NaN	NaN	0.089764	1	11856	11856		37.302	11.501	1	79336			25696	428	14791	15215	20468	20468					0.020435285913663392
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8038226282501	2	563.803823	1125.59309	2.0798	0.0011726	-1.6412	-0.00092531	0.43859	0.00024728	563.8030116088404	16.038	0.26395	16.038	15.966	16.23	0	1209	52	0.892844	0.03126645	0.892844	361.99677	0	12.676727						296	12	3	NaN	NaN	NaN	0.21199	1	13918	13918		24.562	6.5923	1	71340			25697	6839	14792	15216	20469	20469					0.03531950083151969
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8038226282501	2	563.803823	1125.59309	2.0157	0.0011365	-1.6809	-0.0009477	0.33483	0.00018878	563.8029321987343	16.251	0.3357	16.238	16.094	16.43	-0.012995	1206	82	0.894683	0.049679935	0.89316356	362.74237	0	20.142334						415	15	4	NaN	NaN	NaN	0.38313	1	13488	13488		14.425	2.8766	1	72765			25698	6839	14792	15216	20470	20470					0.03531950083151969
SYPTFFPRF	9	Unmodified	_SYPTFFPRF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2900167612501	2	581.290017	1160.56548	2.3728	0.0013793	-1.5929	-0.00092595	0.7799	0.00045335	581.2894308442678	28.388	0.38612	28.388	28.243	28.629	0	1179	103	0.9112251	0.062515974	0.9112251	369.31448	0	25.337372						1311	17	5	NaN	NaN	NaN	0.074859	1	15163	15163		39.459	20.34	1	394290			25699	782	14793	15217	20471	20471					-0.008379531770970061
SYPTFFPRF	9	Unmodified	_SYPTFFPRF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2900167612501	2	581.290017	1160.56548	1.7614	0.0010239	-1.4014	-0.00081459	0.36002	0.00020927	581.2894685449122	28.411	0.36194	28.402	28.257	28.619	-0.0089798	1179	100	0.9112251	0.060667455	0.90970564	369.31448	0	24.588165						1193	16	4	NaN	NaN	NaN	0.18779	1	14648	14648		26.115	9.5308	1	373030			25700	782	14793	15217	20472	20472					-0.008379531770970061
SYPTFFPRFEF	11	Unmodified	_SYPTFFPRFEF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3455202674501	2	719.34552	1436.67649	1.0952	0.00078781	-1.8193	-0.0013087	-0.72414	-0.00052091	719.3446708967899	32.08	0.28957	32.08	31.959	32.249	0	1035	82	0.99917877	0.04937005	0.99917877	404.04626	0	19.964172						663	13	4	NaN	NaN	NaN	0.04842	1	20313	20313		63.995	53.03	1	102330			25701	782	14794	15218	20473	20473					-0.024383582596783526
SYPTFFPRFEF	11	Unmodified	_SYPTFFPRFEF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3455202674501	2	719.34552	1436.67649	0.78999	0.00056828	-2.2693	-0.0016324	-1.4793	-0.0010641	719.3436832291936	32.127	0.24128	32.123	32.003	32.244	-0.0037575	1032	73	1.0010062	0.043882072	0.99948686	404.78528	0	17.744965						668	11	4	NaN	NaN	NaN	0.011687	1	19345	19345		82.991	67.169	1	100450			25702	782	14794	15218	20474	20474					-0.024383582596783526
SYPTFIATYI	10	Unmodified	_SYPTFIATYI_					0	0	0			REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3027897855001	2	588.30279	1174.59103	1.6896	0.00099397	-3.286	-0.0019332	-1.5964	-0.00093919	588.803857007802	28.508	0.024132	28.508	28.484	28.508	0	1149	106	0.92958635	0.06430256	0.92958635	376.70337	0	26.05783						77	2	2	NaN	NaN	NaN	0.65442	1	15636	15636		11.17	1.4243	1	9234.8	+		25703	10932	14795	15219	20475	20475					0.010714765546708804
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2532969039501	2	560.253297	1118.49204	1.3734	0.00076945	-0.62137	-0.00034813	0.75202	0.00042132	560.2527943157178	31.887	0.26547	31.887	31.815	32.08	0	1224	70	0.883646	0.042329073	0.883646	358.295	0	17.1633						393	12	3	NaN	NaN	NaN	0.013696	1	13600	13600		81.699	45.465	1	151440			25704	2168	14796	15220	20476	20476					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1119.4993173413	1	1119.49932	1118.49204	1.8075	0.0020235	0.76658	0.00085819	2.5741	0.0028817	1119.4995278177526	31.887	0.38613	31.887	31.79	32.177	0	69	97	1.5776473	0.056531787	1.5776473	319.85056	0	11.461212						685	17	4	NaN	NaN	NaN	0.030696	1	13601	13601		58.2	27.589	1	149330			25705	2168	14796	15220	20477	20477					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2532969039501	2	560.253297	1118.49204	0.93333	0.0005229	-0.57401	-0.00032159	0.35932	0.00020131	560.2529618811017	31.886	0.26545	31.881	31.833	32.099	-0.0044155	1221	70	0.885486	0.042324543	0.88396657	359.04108	0	17.161469						300	12	2	NaN	NaN	NaN	0.026469	1	13200	13200		63.731	35.942	1	166660			25706	2168	14796	15220	20478	20478					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1119.4993173413	1	1119.49932	1118.49204	1.0082	0.0011287	0.41373	0.00046317	1.422	0.0015919	1119.4999690366485	31.886	0.24128	31.881	31.833	32.074	-0.0044155	69	118	1.5776473	0.06893098	1.5761279	319.85056	0	13.975006						627	11	4	NaN	NaN	NaN	0.010878	1	13201	13201		90.252	50.098	1	129050			25707	2168	14796	15220	20479	20479					-0.06246546410238807
SYQFILNLF	9	Unmodified	_SYQFILNLF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.80549964995	2	572.8055	1143.59645	0.74303	0.00042561	-1.221	-0.00069938	-0.47794	-0.00027377	572.8045535717341	38.42	0.26433	38.42	38.348	38.612	0	1209	49	0.892844	0.029425621	0.892844	361.9278	0	11.928131						289	12	4	NaN	NaN	NaN	0.030696	1	14587	14587		58.2	22.903	1	36889			25708	2035	14797	15221	20480	20480					0.03039200137118314
SYQFILNLF	9	Unmodified	_SYQFILNLF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.80549964995	2	572.8055	1143.59645	1.1488	0.00065804	-1.9843	-0.0011366	-0.83545	-0.00047855	572.8043939336827	38.393	0.19226	38.397	38.349	38.542	0.0040283	1209	43	0.892844	0.025744617	0.8913246	361.9278	0	10.435974						233	9	3	NaN	NaN	NaN	0.015029	1	14106	14106		78.289	25.665	1	33479			25709	2035	14797	15221	20481	20481					0.03039200137118314
SYQFVNAVLG	10	Unmodified	_SYQFVNAVLG_					0	0	0			REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.28493138335	2	549.284931	1096.55531	1.3977	0.00076775	0.67886	0.00037289	2.0766	0.0011406	549.2853789581255	25.057	0.14475	25.057	25.033	25.178	0	1254	64	0.8652351	0.03867334	0.8652351	350.9153	0	15.684814						95	7	2	NaN	NaN	NaN	0.66626	1	12700	12700		10.36	0.61416	1	11111	+		25710	13417	14798	15222	20482	20482					0.010894390976545765
SYQFVNAVLG	10	Unmodified						0	0	0			REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	REV__tr|U7SKL3|U7SKL3_FUSNUThymidylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thyAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.284931	1096.55531	1.3977	0.00076775	0.67886	0.00037289	2.0766	0.0011406	549.2853789581255	25.057	0.14475	25.057	25.033	25.178	0	1254	64	0.8652351	0.03867334	0.8652351	350.9153		15.684814	0	0	0	NaN	10.36	95	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11111	+		25711	13417	14798	15222							0.010894390976545765
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.33696695385	2	587.336967	1172.65938	2.002	0.0011759	-1.8041	-0.0010596	0.19797	0.00011628	587.3355853141726	23.441	0.14472	23.441	23.417	23.562	0	1134	67	0.9387595	0.040368617	0.9387595	380.42798	0	16.359192						186	7	4	NaN	NaN	NaN	0.03533	1	15583	15583		53.14	15.838	1	27098			25712	466	14799	15223	20483	20483					0.07995765925170417
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.33696695385	2	587.336967	1172.65938	1.701	0.00099903	-1.0967	-0.00064414	0.60423	0.00035489	587.3361686765702	23.609	0.24098	23.596	23.524	23.765	-0.013048	1140	70	0.93509084	0.04221493	0.9335714	378.94125	0	17.107422						343	11	4	NaN	NaN	NaN	0.028569	1	15028	15028		60.984	36.422	1	46682			25713	466	14799	15223	20484	20484					0.07995765925170417
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.8107819931	2	563.810782	1125.60701	2.7818	0.0015684	0.22993	0.00012964	3.0117	0.001698	563.8109438281089	26.119	0.19307	26.119	26.07	26.263	0	1197	88	0.9001988	0.053319573	0.9001988	364.97864	0	21.618011						567	9	4	NaN	NaN	NaN	0.026469	1	13922	13922		63.731	16.595	1	469920			25714	4594	14800	15224	20485	20485					0.04923182791549152
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8107819931	2	563.810782	1125.60701	2.4581	0.0013859	-0.1872	-0.00010555	2.2709	0.0012804	563.8108378851434	26.143	0.19304	26.131	26.083	26.276	-0.011137	1194	100	0.902037	0.06068057	0.9005176	365.72394	0	24.602448						606	9	4	NaN	NaN	NaN	0.012223	1	13490	13490		86.17	24.899	1	486790			25715	4594	14800	15224	20486	20486					0.04923182791549152
SYQKVMALW	9	Unmodified	_SYQKVMALW_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2917021704501	2	563.291702	1124.56885	2.2001	0.0012393	-0.71623	-0.00040345	1.4839	0.00083587	563.2907129898763	25.129	0.31366	25.129	25.081	25.395	0	1215	100	0.8891654	0.06069368	0.8891654	360.50928	0	24.608063						663	14	4	NaN	NaN	NaN	0.023828	1	13871	13871		67.154	28.236	1	155760			25716	2542	14801	15225	20487	20487					0.011549736052529624
SYQKVMALW	9	Unmodified	_SYQKVMALW_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.2917021704501	2	563.291702	1124.56885	1.8483	0.0010411	-1.0402	-0.00058596	0.80804	0.00045516	563.2912655194687	25.153	0.3377	25.141	25.069	25.407	-0.012011	1215	85	0.8891654	0.051505983	0.88764596	360.50928	0	20.882935						563	15	5	NaN	NaN	NaN	0.0092442	1	13444	13444		93.929	60.23	1	141690			25717	2542	14801	15225	20488	20488					0.011549736052529624
SYQKVMALW	9	Oxidation (M)	_SYQKVM(Oxidation (M))ALW_		SYQKVM(1)ALW		SYQKVM(66)ALW	0	0	1		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2891594815001	2	571.289159	1140.56377	2.1396	0.0012223	-2.1773	-0.0012439	-0.037715	-2.1546E-05	571.288372067832	21.898	0.16871	21.898	21.85	22.019	0	1221	85	0.885486	0.05151713	0.885486	358.95648	0	20.883911						481	8	4	NaN	NaN	NaN	0.024359	1	14467	14467		66.481	32.042	1	168000			25718	2542	14801	15226	20489	20489		296			-0.0008933025735586853
SYQKVMALW	9	Oxidation (M)	_SYQKVM(Oxidation (M))ALW_		SYQKVM(1)ALW		SYQKVM(84)ALW	0	0	1		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2891594815001	2	571.289159	1140.56377	1.3471	0.0007696	-1.2511	-0.00071473	0.096037	5.4865E-05	571.2886229186342	21.922	0.31314	21.908	21.836	22.149	-0.013897	1221	79	0.885486	0.047837377	0.88396657	358.95648	0	19.392212						566	14	3	NaN	NaN	NaN	0.012861	1	14003	14003		84.233	37.097	1	187480			25719	2542	14801	15226	20490	20490		296			-0.0008933025735586853
SYQPIVDYI	9	Unmodified	_SYQPIVDYI_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000154997|ENST00000388975|SEPTIN14;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5513529118	1	1097.55135	1096.54408	1.6945	0.0018598	-2.7502	-0.0030185	-1.0557	-0.0011587	1097.5484998947156	28.918	0.12063	28.918	28.87	28.991	0	87	73	1.5670487	0.04241681	1.5670487	317.7794	0	8.601654						112	6	2	NaN	NaN	NaN	0.12104	1	12692	12692		32.778	17.315	1	9504.8			25720	3864	14802	15227	20491	20491					-0.0003338299648021348
SYQPIVDYI	9	Unmodified						0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000154997|ENST00000388975|SEPTIN14;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1097.55135	1096.54408	1.5806	0.0017348	-3.1136	-0.0034174	-1.5331	-0.0016826	1097.547335214978	28.918	0.14481	28.909	28.813	28.958	-0.0083504	87	58	1.5670487	0.03357458	1.5655292	317.7794		6.808563	-0.0045493	-0.0001543	-0.00075972	NaN	32.778	119	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11838			25721	3864	14802	15227							-0.0003338299648021348
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2698126354001	2	581.269813	1160.52507	2.1658	0.0012589	-2.6997	-0.0015693	-0.5339	-0.00031034	581.269044183598	19.756	0.24031	19.756	19.708	19.948	0	1227	61	0.88180584	0.036801934	0.88180584	357.39117	0	14.915619						328	11	3	NaN	NaN	NaN	0.090258	1	15154	15154		37.231	21.768	1	65727			25722	5398	14803	15228	20492	20492					-0.04876919567527693
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2698126354001	2	581.269813	1160.52507	1.6553	0.00096217	-2.1178	-0.001231	-0.46246	-0.00026882	581.2686053085818	19.779	0.2166	19.765	19.741	19.958	-0.014141	1230	67	0.8799654	0.040477753	0.878446	356.64526	0	16.405396						288	10	3	NaN	NaN	NaN	0.028404	1	14642	14642		61.199	33.41	1	60744			25723	5398	14803	15228	20493	20493					-0.04876919567527693
SYQSVFLFL	9	Unmodified	_SYQSVFLFL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5771737318	1	1103.57717	1102.5699	3.3042	0.0036464	-6.7686	-0.0074697	-3.4645	-0.0038233	1103.5670741401532	37.145	0.024189	37.145	37.121	37.145	0	54	7	1.5864743	0.0035299063	1.5864743	321.6968	0	0.7157593						10	2	2	NaN	NaN	NaN	0.054111	1	12945	12945		45.165	22.047	1	417.75			25724	872	14804	15229	20494	20494					0.02271511245817237
SYQSVFLFL	9	Unmodified	_SYQSVFLFL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1103.5771737318	1	1103.57717	1102.5699	1.342	0.001481	1.6307	0.0017997	2.9727	0.0032806	1103.5797773787965	37.097	0.048195	37.097	37.048	37.097	0	60	40	1.582944	0.022947788	1.582944	320.98093	0	4.6532288						74	3	3	NaN	NaN	NaN	0.054111	1	12950	12950		45.165	19.05	1	4388.9			25725	872	14804	15229	20495	20495					0.02271511245817237
SYQSVFLFL	9	Unmodified	_SYQSVFLFL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1103.5771737318	1	1103.57717	1102.5699	2.2195	0.0024494	-2.0776	-0.0022928	0.14192	0.00015662	1103.574513203753	37.07	0.048222	37.072	37.072	37.121	0.0022469	54	37	1.5864743	0.021181464	1.5849549	321.6968	0	4.2950745						41	3	2	NaN	NaN	NaN	0.21199	1	12611	12611		24.562	4.1134	1	2589.3			25726	872	14804	15229	20496	20496					0.02271511245817237
SYQWYSWGP	9	Unmodified	_SYQWYSWGP_					0	0	0		ENST00000469140.2_1_14:105929892-105933123:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	ENST00000469140.2_1_14:105929892-105933123:+|nuORF	ENST00000469140.2_1_14:105929892-105933123:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.25363125495	2	587.253631	1172.49271	1.0806	0.00063458	3.6291	0.0021312	4.7097	0.0027658	587.2557165411902	28.025	0.21723	28.016	27.992	28.209	-0.0089779	1179	184	0.9112251	0.11196166	0.90970564	369.27036	0	45.37201						488	10	4	NaN	NaN	NaN	0.49672	1	15009	15009		9.746	0.78402	1	70242			25727	5287	14805	15230	20497	20497					-0.08663706970514795
SYQYGTALT	9	Unmodified	_SYQYGTALT_					0	0	0			REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.2401895286999	2	502.24019	1002.46583	2.092	0.0010507	-6.9461	-0.0034886	-4.8541	-0.0024379	502.2366201741791	18.626	0.09602	18.612	18.564	18.66	-0.014059	1323	34	0.8228144	0.02031231	0.82129496	334.0991	0	8.247681						63	5	2	NaN	NaN	NaN	0.41766	1	8505	8505		13.003	0.43313	1	4999.6	+		25728	8820	14806	15231	20498	20498					-0.03530815581734714
SYQYGTALT	9	Unmodified						0	0	0			REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.24019	1002.46583	2.3668	0.0011887	-3.8557	-0.0019365	-1.4888	-0.00074776	502.2387635998767	18.58	0.14389	18.58	18.508	18.652	0	1320	34	0.824661	0.02031231	0.824661	334.84888		8.247711	-0.015625	0.0014478	0.001683	NaN	13.003	61	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4532.5	+		25729	8820	14806	15231							-0.03530815581734714
SYQYGTALT	9	Unmodified						0	0	0			REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	REV__nc|ENSG00000100445|Q9NRG7-3|SDR39U1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.24019	1002.46583	2.092	0.0010507	-6.9461	-0.0034886	-4.8541	-0.0024379	502.2366201741791	18.626	0.09602	18.612	18.564	18.66	-0.014059	1323	34	0.8228144	0.02031231	0.82129496	334.0991		8.247681	0.015625	-0.0016564	-0.001683	NaN	13.003	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4999.6	+		25730	8820	14806	15231							-0.03530815581734714
SYREFLVGR	9	Unmodified	_SYREFLVGR_					0	0	0			REV__ENST00000399365.7_1_13:33779975-33780017:-|nuORF	REV__ENST00000399365.7_1_13:33779975-33780017:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.2049739077	3	376.204974	1125.59309	2.0866	0.00078498	-2.3097	-0.00086894	-0.22316	-8.3953E-05	376.20424172120914	16.227	0.26374	16.214	16.118	16.382	-0.012995	1500	55	0.71351165	0.033460736	0.7119922	433.92706	0	20.349365						172	12	2	NaN	NaN	NaN	0.41766	1	13487	13487		11.739	0	1	18280	+		25731	12030	14807	15232	20499	20499					0.035319500831292316
SYRELFEFF	9	Unmodified	_SYRELFEFF_					0	0	0		nc|ENSG00000111319|P37088-3|SCNN1A;SCNN1A-DCP1B|2|fusion;SCNN1A-DCP1B|1|fusion;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.2980387586	2	619.298039	1236.58152	0.62833	0.00038912	0.21978	0.00013611	0.84811	0.00052523	619.2985876694831	31.67	0.16897	31.67	31.646	31.815	0	1152	58	0.92775106	0.034869432	0.92775106	375.7408	0	14.122192						188	8	3	NaN	NaN	NaN	0.40649	1	17437	17437		13.463	1.4144	1	28209			25732	1799	14808	15233	20500	20500					-0.027302917308816177
SYRELFEFF	9	Unmodified	_SYRELFEFF_					0	0	0		nc|ENSG00000111319|P37088-3|SCNN1A;SCNN1A-DCP1B|2|fusion;SCNN1A-DCP1B|1|fusion;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	nc|ENSG00000111319|P37088-3|SCNN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.2980387586	2	619.298039	1236.58152	0.10473	6.4859E-05	0.15087	9.3434E-05	0.2556	0.00015829	619.2974011923368	31.741	0.19311	31.737	31.664	31.857	-0.0044155	1146	61	0.93142134	0.03671062	0.9299019	377.22726	0	14.867859						261	9	3	NaN	NaN	NaN	0.44834	1	16709	16709		11.739	4.8757	1	32209			25733	1799	14808	15233	20501	20501					-0.027302917308816177
SYRIDNPID	9	Unmodified	_SYRIDNPID_					0	0	0		ENST00000324559.8_1_11:22284505-22284571:+|nuORF	ENST00000324559.8_1_11:22284505-22284571:+|nuORF	ENST00000324559.8_1_11:22284505-22284571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7696454599	2	546.769645	1091.52474	1.3819	0.0007556	-6.9449	-0.0037973	-5.563	-0.0030417	546.7655872427667	21.392	0.12017	21.378	21.306	21.426	-0.014006	1245	94	0.87076044	0.057101607	0.869241	353.17648	0	23.160126						181	6	2	NaN	NaN	NaN	0.41766	1	12146	12146		13.003	1.264	1	16870			25734	6489	14809	15234	20502	20502					-0.01736339287390365
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.82422371935	2	594.824224	1187.63389	1.3807	0.00082128	-0.63243	-0.00037618	0.74828	0.0004451	594.8241066134432	28.725	0.096525	28.725	28.653	28.75	0	1146	109	0.93142134	0.06608629	0.93142134	377.39886	0	26.777252						387	5	4	NaN	NaN	NaN	0.024221	1	16085	16085		66.656	8.4568	1	87671			25735	4251	14810	15235	20503	20503					0.04758291402731629
SYRNIFPIW	9	Unmodified	_SYRNIFPIW_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS;ENST00000491729.1_1_21:47611020-47611911:-|nuORF	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.31656586275	2	598.316566	1194.61858	0.84374	0.00050482	-8.7096	-0.0052111	-7.8658	-0.0047063	598.3127272228553	29.859	0.21712	29.852	29.755	29.972	-0.0070648	1161	94	0.9222442	0.05694139	0.92072475	373.65536	0	23.070312						382	10	5	NaN	NaN	NaN	0.097143	1	15666	15666		36.235	14.4	1	97371			25736	4058	14811	15236	20504	20504					0.029054246055466137
SYRPATLP	8	Unmodified	_SYRPATLP_					0	0	0			REV__MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	REV__MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.74798477104997	2	452.747985	903.481417	1.2167	0.00055084	0.75739	0.00034291	1.974	0.00089374	452.74871646114656	15.99	0.096035	15.99	15.966	16.062	0	1362	37	0.79879075	0.02219367	0.79879075	324.825	0	9.024994						69	5	2	NaN	NaN	NaN	0.83211	1	6149	6149		4.9097	0	1	5043.7	+		25737	13069	14812	15237	20505	20505					0.025815157259899024
SYRPVFKMV	9	Unmodified	_SYRPVFKMV_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.2074384289666	3	376.207438	1125.60049	1.6276	0.00061232	-8.1744	-0.0030753	-6.5468	-0.0024629	376.2044387021541	16.038	0.16792	16.038	15.99	16.158	0	1509	43	0.70793515	0.026027799	0.70793515	430.53568	0	15.82901						134	8	3	NaN	NaN	NaN	0.29681	1	13917	13917		16.858	8.5808	1	13025	+		25738	8858	14813	15238	20506	20506					0.04270966359194972
SYRPVFKMV	9	Unmodified						0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	376.207438	1125.60049	1.6276	0.00061232	-8.1744	-0.0030753	-6.5468	-0.0024629	376.2044387021541	16.038	0.16792	16.038	15.99	16.158	0	1509	43	0.70793515	0.026027799	0.70793515	430.53568		15.82901	-0.088028	0.00042289	-0.0020285	NaN	16.858	134	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13025	+		25739	8858	14813	15238							0.04270966359194972
SYRPVFKMV	9	Unmodified						0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	376.207438	1125.60049	2.0866	0.00078498	-8.8607	-0.0033335	-6.7741	-0.0025485	376.20424172120914	16.227	0.26374	16.214	16.118	16.382	-0.012995	1500	55	0.71351165	0.033460736	0.7119922	433.92706		20.349365	0.088028	-0.00035171	0.0020285	NaN	16.858	172	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18280	+		25740	8858	14813	15238							0.04270966359194972
SYSASQFYL	9	Unmodified	_SYSASQFYL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4887526549999	1	1065.48875	1064.48148	1.7917	0.001909	0.84889	0.00090449	2.6406	0.0028135	1065.4894778544187	26.674	0.048271	26.674	26.65	26.698	0	180	85	1.5121819	0.049607158	1.5121819	306.76782	0	10.063507						147	3	3	NaN	NaN	NaN	0.026469	1	11315	11315		63.731	19.092	1	16299			25741	4588	14814	15239	20507	20507					-0.0481852906466429
SYSASQFYL	9	Unmodified	_SYSASQFYL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4887526549999	1	1065.48875	1064.48148	1.0698	0.0011399	1.225	0.0013052	2.2948	0.0024451	1065.4904445176237	26.673	0.048254	26.663	26.639	26.687	-0.010643	177	76	1.5139546	0.044299126	1.5124352	307.12744	0	8.986694						146	3	4	NaN	NaN	NaN	0.032689	1	11053	11053		55.592	31.03	1	14356			25742	4588	14814	15239	20508	20508					-0.0481852906466429
SYSASQFYL	9	Unmodified	_SYSASQFYL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4887526549999	1	1065.48875	1064.48148	1.1207	0.0011941	3.626	0.0038635	4.7467	0.0050576	1065.4931850253467	26.794	0.19306	26.783	26.711	26.904	-0.010645	153	109	1.5281296	0.06379402	1.5266101	310.00302	0	12.941528						472	9	3	NaN	NaN	NaN	0.070055	1	11054	11054		40.154	9.5437	1	62704			25743	4588	14814	15239	20509	20509					-0.0481852906466429
SYSCPKFL	8	Unmodified	_SYSCPKFL_					0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.4546157551	1	944.454616	943.447339	1.7915	0.001692	2.3596	0.0022285	4.1511	0.0039205	944.4568022646131	22.742	0.096466	22.742	22.718	22.814	0	354	46	1.4090419	0.026754975	1.4090419	286.3132	0	5.436554						96	5	2	NaN	NaN	NaN	0.65075	1	6897	6897		22.126	1.5709	1	8798.6			25744	1197	14815	15240	20510	20510					-0.0266464875727479
SYSCPKFL	8	Unmodified						0	0	0		ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	ENSG00000100129|ENST00000652021|EIF3L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.454616	943.447339	1.6989	0.0016045	1.1724	0.0011073	2.8713	0.0027118	944.4553513811643	22.766	0.12047	22.752	22.704	22.824	-0.01354	351	52	1.4108255	0.030315995	1.409306	286.67563		6.160095	0.0050005	-0.00046606	0.00013212	NaN	22.126	114	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8899.6			25745	1197	14815	15240							-0.0266464875727479
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2662073139501	2	527.266207	1052.51786	1.683	0.0008874	-2.6541	-0.0013994	-0.97112	-0.00051204	527.2642379153165	22.284	0.096491	22.284	22.212	22.308	0	1305	82	0.83389086	0.049792826	0.83389086	338.3785	0	20.205078						268	5	4	NaN	NaN	NaN	0.032689	1	10732	10732		55.592	32.257	1	38587			25746	4694	14816	15241	20511	20511					-0.006296521679587386
SYSGVSLF	8	Unmodified	_SYSGVSLF_					0	0	0		nc|ENSG00000011465|P07585-4|DCN;nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN;ENSG00000011465|ENST00000052754|DCN	nc|ENSG00000011465|P07585-4|DCN	nc|ENSG00000011465|P07585-4|DCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.4196104573	1	859.41961	858.412334	1.6848	0.0014479	-0.26722	-0.00022965	1.4175	0.0012183	859.4196931937213	27.471	0.12069	27.471	27.422	27.543	0	483	43	1.3321642	0.025087357	1.3321642	271.0774	0	5.1049194						105	6	2	NaN	NaN	NaN	0.65075	1	5513	5513		22.126	5.7097	1	8784.9			25747	410	14817	15242	20512	20512					-0.02253568293576791
SYSGVSLF	8	Unmodified	_SYSGVSLF_					0	0	0		nc|ENSG00000011465|P07585-4|DCN;nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN;ENSG00000011465|ENST00000052754|DCN	nc|ENSG00000011465|P07585-4|DCN	nc|ENSG00000011465|P07585-4|DCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.4196104573	1	859.41961	858.412334	1.1163	0.00095939	-0.3651	-0.00031377	0.75122	0.00064562	859.419380388965	27.47	0.12067	27.46	27.436	27.557	-0.0095501	483	46	1.3321642	0.02687788	1.3306447	271.0774	0	5.469269						102	6	2	NaN	NaN	NaN	0.23746	1	5379	5379		47.04	13.342	1	9061.3			25748	410	14817	15242	20513	20513					-0.02253568293576791
SYSHIMALI	9	Unmodified	_SYSHIMALI_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7706025876001	2	517.770603	1033.52665	2.3059	0.0011939	-7.4028	-0.0038329	-5.0969	-0.002639	517.7661404199716	25.853	0.12064	25.853	25.829	25.95	0	1227	121	0.88180584	0.07369143	0.88180584	357.9065	0	29.90982						363	6	3	NaN	NaN	NaN	0.12945	1	9926	9926		31.561	8.4435	1	59240			25749	4073	14818	15243	20514	20514					0.011229981968881475
SYSHIMALI	9	Unmodified	_SYSHIMALI_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7706025876001	2	517.770603	1033.52665	2.0994	0.001087	-7.1679	-0.0037113	-5.0685	-0.0026243	517.7662141260308	25.901	0.16893	25.89	25.817	25.986	-0.0116	1296	127	0.8394264	0.07737601	0.83790696	340.70557	0	31.405304						507	8	3	NaN	NaN	NaN	0.27442	1	9717	9717		20.555	6.5139	1	68530			25750	4073	14818	15243	20515	20515					0.011229981968881475
SYSHPIPPDP	10	Unmodified	_SYSHPIPPDP_					0	0	0			REV__RWDD4-SORBS2|5|fusion	REV__RWDD4-SORBS2|5|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2667386302	2	555.266739	1108.51892	1.2049	0.00066906	3.936	0.0021856	5.141	0.0028546	555.2687596907235	24.647	0.19296	24.634	24.562	24.755	-0.012394	1239	112	0.87444305	0.06808728	0.8729236	354.60226	0	27.610596						317	9	2	NaN	NaN	NaN	0.5917	1	12845	12845		15.463	7.2179	1	38418	+		25751	10096	14819	15244	20516	20516					-0.030994377990509747
SYSHPIPPDP	10	Unmodified						0	0	0			REV__RWDD4-SORBS2|5|fusion	REV__RWDD4-SORBS2|5|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.266739	1108.51892	1.2049	0.00066906	3.936	0.0021856	5.141	0.0028546	555.2687596907235	24.647	0.19296	24.634	24.562	24.755	-0.012394	1239	112	0.87444305	0.06808728	0.8729236	354.60226		27.610596	0.005802	0.00016377	-0.0016802	NaN	15.463	317	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38418	+		25752	10096	14819	15244							-0.030994377990509747
SYSMIVNNL	9	Unmodified	_SYSMIVNNL_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5081078885999	1	1040.50811	1039.50083	2.116	0.0022017	0.28495	0.00029649	2.4009	0.0024982	1040.5087802306916	26.481	0.24137	26.481	26.432	26.674	0	153	136	1.5281296	0.07978058	1.5281296	310.09836	0	16.189636						631	11	4	NaN	NaN	NaN	2.212E-07	1	10185	10185		133.34	86.303	1	216560			25753	2067	14820	15245	20517	20517					-0.017338960454253538
SYSMIVNNL	9	Unmodified	_SYSMIVNNL_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5081078885999	1	1040.50811	1039.50083	1.6757	0.0017436	-0.38368	-0.00039922	1.2921	0.0013444	1040.50811269202	26.48	0.24129	26.47	26.446	26.687	-0.010645	150	133	1.5299006	0.078003645	1.5283811	310.45773	0	15.829041						625	11	4	NaN	NaN	NaN	0.011693	1	9973	9973		87.778	35.154	1	211420			25754	2067	14820	15245	20518	20518					-0.017338960454253538
SYSMIVNNL	9	Unmodified	_SYSMIVNNL_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.7576921776	2	520.757692	1039.50083	1.332	0.00069367	0.64514	0.00033596	1.9772	0.0010296	520.7580938274987	26.48	0.16888	26.47	26.446	26.614	-0.010645	1272	52	0.854179	0.031344235	0.8526596	346.6671	0	12.721008						163	8	3	NaN	NaN	NaN	0.27442	1	9974	9974		20.555	5.5426	1	23357			25755	2067	14820	15245	20519	20519					-0.017338960454253538
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(110)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5030225106998	1	1056.50302	1055.49575	2.1918	0.0023157	-2.5835	-0.0027295	-0.39171	-0.00041384	1056.5005429339735	23.682	0.048195	23.682	23.658	23.706	0	159	79	1.5245869	0.04606867	1.5245869	309.31805	0	9.34668						187	3	4	NaN	NaN	NaN	0.0028258	1	10872	10872		108.53	50.332	1	30029			25756	2067	14820	15246	20520	20520		238			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(65)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.75514948865	2	528.755149	1055.49575	1.8756	0.00099176	-1.7248	-0.00091199	0.15086	7.9767E-05	528.7543281129701	23.682	0.072325	23.682	23.634	23.706	0	1269	67	0.8560222	0.04055661	0.8560222	347.34637	0	16.456543						179	4	4	NaN	NaN	NaN	0.025843	1	10873	10873		64.55	11.77	1	67470			25757	2067	14820	15246	20521	20521		238			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(64)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75514948865	2	528.755149	1055.49575	1.4697	0.00077711	-1.9773	-0.0010455	-0.50755	-0.00026837	528.7547251438633	23.706	0.04817	23.693	23.645	23.693	-0.013048	1269	73	0.8560222	0.044248343	0.85450274	347.34637	0	17.954529						165	3	4	NaN	NaN	NaN	0.026295	1	10643	10643		63.958	42.123	1	68487			25758	2067	14820	15246	20522	20522		238			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(70)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5030225106998	1	1056.50302	1055.49575	1.9298	0.0020389	-2.1078	-0.0022269	-0.17798	-0.00018804	1056.5000634089245	23.706	0.072254	23.693	23.645	23.717	-0.013048	159	76	1.5245869	0.04428971	1.5230675	309.31805	0	8.985779						146	4	4	NaN	NaN	NaN	0.021751	1	10644	10644		69.782	33.547	1	24937			25759	2067	14820	15246	20523	20523		238			-0.029781999080341848
SYSPEALWRYL	11	Unmodified	_SYSPEALWRYL_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.8484270971501	2	692.848427	1383.6823	0.99498	0.00068937	-3.2428	-0.0022468	-2.2479	-0.0015574	692.8449118695922	30.341	0.072371	30.335	30.287	30.359	-0.0064106	1104	43	0.9570911	0.025642037	0.95557165	387.16827	0	10.372894						74	4	2	NaN	NaN	NaN	0.73717	1	18991	18991		5.0169	2.4174	1	7921.3			25760	1463	14821	15247	20524	20524					0.005807402520076721
SYSPEALWRYL	11	Unmodified						0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	692.848427	1383.6823	1.54	0.001067	-4.6031	-0.0031892	-3.063	-0.0021222	692.8456070744189	30.318	0.096533	30.318	30.294	30.391	0	1101	49	0.95892316	0.029308379	0.95892316	387.9094		11.855988	-0.0083661	-0.00090945	0.0016758	NaN	5.0169	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8938.3			25761	1463	14821	15247							0.005807402520076721
SYSPETFRQQF	11	Unmodified	_SYSPETFRQQF_					0	0	0		ENST00000586585.1_1_18:32953773-32954277:-|nuORF;nc|ENSG00000186496|Q96N95-2|ZNF396;nc|ENSG00000186496|Q96N95-3|ZNF396;ENSG00000186496|ENST00000589332|ZNF396	ENST00000586585.1_1_18:32953773-32954277:-|nuORF	ENST00000586585.1_1_18:32953773-32954277:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3253161416001	2	695.325316	1388.63608	1.3687	0.00095168	-0.4439	-0.00030866	0.92479	0.00064303	695.3264256167047	20.911	0.072268	20.897	20.873	20.945	-0.014086	1095	37	0.9625867	0.02197653	0.96106726	389.37762	0	8.8897705						47	4	2	NaN	NaN	NaN	0.47586	1	19038	19038		19.336	8.1661	1	3299.2			25762	5476	14822	15248	20525	20525					-0.042693246500903115
SYSPETFRQQF	11	Unmodified						0	0	0		ENST00000586585.1_1_18:32953773-32954277:-|nuORF;nc|ENSG00000186496|Q96N95-2|ZNF396;nc|ENSG00000186496|Q96N95-3|ZNF396;ENSG00000186496|ENST00000589332|ZNF396	ENST00000586585.1_1_18:32953773-32954277:-|nuORF	ENST00000586585.1_1_18:32953773-32954277:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	695.325316	1388.63608	1.2664	0.00088059	-1.6197	-0.0011262	-0.35324	-0.00024562	695.3235809173239	20.911	0.096294	20.911	20.887	20.983	0	1095	43	0.9625867	0.025639296	0.9625867	389.37762		10.371399	0.0069701	-0.00062291	0.00075972	NaN	19.336	58	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4085.6			25763	5476	14822	15248							-0.042693246500903115
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2927564154501	2	556.292756	1110.57096	1.1902	0.00066213	-6.9898	-0.0038884	-5.7996	-0.0032263	556.2892210778541	24.671	0.14471	24.658	24.586	24.731	-0.012392	1218	70	0.8873258	0.042329073	0.8858064	359.81833	0	17.164795						199	7	2	NaN	NaN	NaN	0.48181	1	12927	12927		10.36	0	1	32602			25764	2658	14823	15249	20526	20526					0.02009725614720992
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7663744894501	2	537.766374	1073.5182	1.8849	0.0010137	-3.0717	-0.0016518	-1.1867	-0.00063818	537.7649595592356	22.308	0.096491	22.308	22.212	22.308	0	1278	58	0.85049206	0.03502804	0.85049206	345.0278	0	14.210175						92	5	2	NaN	NaN	NaN	0.089764	1	11705	11705		37.302	10.006	1	26489			25765	2688	14824	15250	20527	20527					-0.01562232448100076
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7663744894501	2	537.766374	1073.5182	0.9569	0.00051459	1.4774	0.00079451	2.4343	0.0013091	537.767591532524	22.308	0.072378	22.294	22.222	22.294	-0.013731	1275	55	0.85233563	0.033179045	0.8508162	345.77567	0	13.460083						69	4	2	NaN	NaN	NaN	0.2345	1	11404	11404		23.118	10.115	1	20202			25766	2688	14824	15250	20528	20528					-0.01562232448100076
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.4632661859998	1	1032.46327	1031.45599	1.1777	0.0012159	1.0764	0.0011113	2.2541	0.0023272	1032.4647024071462	22.38	0.1684	22.366	22.318	22.486	-0.013733	204	76	1.4979934	0.044350743	1.496474	304.01395	0	9.000885						228	8	3	NaN	NaN	NaN	0.0092442	1	9622	9622		93.929	43.967	1	25618			25767	4840	14825	15251	20529	20529					-0.05848003587107087
SYSSCYSF	8	Unmodified	_SYSSCYSF_					0	0	0		ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENSG00000128422|ENST00000311208|KRT17	ENSG00000128422|ENST00000311208|KRT17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.3502102631	1	943.35021	942.342934	1.6112	0.0015199	-0.62993	-0.00059425	0.98124	0.00092565	943.3498830952749	22.693	0.16884	22.68	22.559	22.728	-0.01354	321	46	1.4286518	0.026723742	1.4271324	290.3028	0	5.4302673						159	8	2	NaN	NaN	NaN	0.16485	1	6726	6726		52.758	16.722	1	13846		+	25768	206	14826	15252	20530	20530					-0.13054395304641275
SYSSIASEF	9	Unmodified	_SYSSIASEF_					0	0	0		TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4414681114001	1	990.441468	989.434192	1.8543	0.0018366	-0.92743	-0.00091856	0.9269	0.00091804	990.4417780744186	24.55	0.072386	24.55	24.55	24.623	0	309	37	1.435777	0.021368742	1.435777	291.55054	0	4.3391724						73	4	2	NaN	NaN	NaN	0.028349	1	8178	8178		61.271	37.937	1	5187.5			25769	4486	14827	15253	20531	20531					-0.060948083356493044
SYSSIASEF	9	Unmodified	_SYSSIASEF_					0	0	0		TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENSG00000166479|ENST00000299608|TMX3	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4414681114001	1	990.441468	989.434192	1.8546	0.0018369	3.7638	0.0037278	5.6184	0.0055647	990.444604015927	24.574	0.12061	24.562	24.538	24.658	-0.012392	306	43	1.4375578	0.024932861	1.4360384	291.91214	0	5.0628967						80	6	2	NaN	NaN	NaN	0.036546	1	8015	8015		52.624	32.069	1	5627.6			25770	4486	14827	15253	20532	20532					-0.060948083356493044
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		ENSG00000162825|ENST00000698833|NBPF20;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11	ENSG00000162825|ENST00000698833|NBPF20	ENSG00000162825|ENST00000698833|NBPF20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.73781401525	2	514.737814	1027.46108	2.6702	0.0013745	-1.7763	-0.00091431	0.89397	0.00046016	514.7370302665411	18.532	0.23979	18.532	18.436	18.676	0	1284	70	0.8468043	0.042429864	0.8468043	343.72675	0	17.222717						360	11	3	NaN	NaN	NaN	0.074859	1	9652	9652		39.459	11.67	1	44023			25771	4185	14828	15254	20533	20533					-0.05155699724468832
SYSVMKTFCL	10	Unmodified	_SYSVMKTFCL_					0	0	0			REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7828526831001	2	589.782853	1177.55115	1.4174	0.00083596	-10.717	-0.0063207	-9.2996	-0.0054847	589.7762699048059	23.127	0.16868	23.114	23.017	23.186	-0.013296	1206	79	0.894683	0.047806323	0.89316356	362.54868	0	19.372375						130	7	3	NaN	NaN	NaN	0.62092	1	15162	15162		13.463	1.4144	1	39735	+		25772	12704	14829	15255	20534	20534					-0.03052109711893536
SYSYSYSF	8	Unmodified	_SYSYSYSF_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4043543236	1	1003.40435	1002.39708	1.7379	0.0017438	-0.93846	-0.00094165	0.7994	0.00080212	1003.4044427402329	23.923	0.19294	23.91	23.886	24.079	-0.013048	195	52	1.5033154	0.03015852	1.501796	305.21075	0	6.122925						192	9	3	NaN	NaN	NaN	0.050534	1	8502	8502		78.398	42.362	1	16927			25773	1143	14830	15256	20535	20535					-0.10402479881418003
SYTANLAAF	9	Unmodified	_SYTANLAAF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2A|p.A643S|1|0.78|ENSG00000183454|chr16:9829503-9829503|C/A|missense_variant;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;nc|ENSG00000171189|P39086|GRIK1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;ENSG00000171189|ENST00000327783|GRIK1;ENSG00000155511|ENST00000285900|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;nc|ENSG00000176884|Q05586-5|GRIN1;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000152208|ENST00000282020|GRID2;ENSG00000182771|ENST00000327946|GRID1;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000155511|P42261-2|GRIA1;nc|ENSG00000171189|P39086-2|GRIK1;ENST00000487395.1_1_6:102376237-102441071:+|nuORF;ENSG00000152578|ENST00000282499|GRIA4;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000155511|P42261-4|GRIA1;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000176884|Q05586-2|GRIN1;GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-5|GRIK2;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000176884|Q05586-3|GRIN1;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000273079|ENST00000609686|GRIN2B	nc|ENSG00000163873|Q13003-2|GRIK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	957.4676232823999	1	957.467623	956.460347	1.9723	0.0018885	0.651	0.00062331	2.6233	0.0025118	957.4680808451147	25.66	0.16891	25.66	25.636	25.805	0	345	103	1.4143922	0.060583472	1.4143922	287.34415	0	12.307983						303	8	3	NaN	NaN	NaN	6.5392E-05	1	7246	7246		125.02	60.47	1	40018			25774	4265;1541;6175	14831	15257	20536	20536					-0.01962494373537993
SYTANLAAF	9	Unmodified	_SYTANLAAF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2A|p.A643S|1|0.78|ENSG00000183454|chr16:9829503-9829503|C/A|missense_variant;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;nc|ENSG00000171189|P39086|GRIK1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;ENSG00000171189|ENST00000327783|GRIK1;ENSG00000155511|ENST00000285900|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;nc|ENSG00000176884|Q05586-5|GRIN1;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000152208|ENST00000282020|GRID2;ENSG00000182771|ENST00000327946|GRID1;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000155511|P42261-2|GRIA1;nc|ENSG00000171189|P39086-2|GRIK1;ENST00000487395.1_1_6:102376237-102441071:+|nuORF;ENSG00000152578|ENST00000282499|GRIA4;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000155511|P42261-4|GRIA1;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;nc|ENSG00000176884|Q05586-2|GRIN1;GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-5|GRIK2;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000176884|Q05586-3|GRIN1;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000273079|ENST00000609686|GRIN2B	nc|ENSG00000163873|Q13003-2|GRIK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	957.4676232823999	1	957.467623	956.460347	2.1818	0.002089	-0.45127	-0.00043208	1.7306	0.001657	957.4673271860621	25.684	0.19303	25.672	25.624	25.817	-0.0116	345	88	1.4143922	0.051682472	1.4128729	287.34415	0	10.499664						278	9	3	NaN	NaN	NaN	0.036546	1	7107	7107		52.624	24.835	1	38496			25775	4265;1541;6175	14831	15257	20537	20537					-0.01962494373537993
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.27984600545	2	607.279846	1212.54514	1.6785	0.0010193	0.31613	0.00019198	1.9946	0.0012113	607.2805823943833	25.684	0.14477	25.684	25.636	25.781	0	1191	55	0.90387505	0.03308952	0.90387505	366.15106	0	13.404236						125	7	3	NaN	NaN	NaN	0.27507	1	16779	16779		20.513	11.551	1	22507			25776	448	14832	15258	20538	20538					-0.05263168627561754
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.27984600545	2	607.279846	1212.54514	1.5399	0.00093515	-2.0651	-0.0012541	-0.52525	-0.00031897	607.2793295368617	25.708	0.12064	25.696	25.672	25.793	-0.0116	1194	49	0.902037	0.029416084	0.9005176	365.40652	0	11.916199						136	6	3	NaN	NaN	NaN	0.23499	1	16111	16111		23.086	10.516	1	25885			25777	448	14832	15258	20539	20539					-0.05263168627561754
SYTEISQAQM	10	Unmodified	_SYTEISQAQM_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.26079597255	2	579.260796	1156.50704	1.5449	0.0008949	-2.6716	-0.0015475	-1.1267	-0.00065264	579.2588424052853	24.261	0.16888	24.261	24.237	24.406	0	1251	58	0.8670771	0.034993947	0.8670771	351.43604	0	14.183441						283	8	4	NaN	NaN	NaN	0.71559	1	15028	15028		6.9844	0.89403	1	50866	+		25778	9582	14833	15259	20540	20540					-0.06495422604552914
SYTEISQAQM	10	Unmodified						0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	579.260796	1156.50704	1.5449	0.0008949	-2.6716	-0.0015475	-1.1267	-0.00065264	579.2588424052853	24.261	0.16888	24.261	24.237	24.406	0	1251	58	0.8670771	0.034993947	0.8670771	351.43604		14.183441	0.0065195	-0.00066693	0.00075972	NaN	6.9844	283	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50866	+		25779	9582	14833	15259							-0.06495422604552914
SYTFQTFSF	9	Unmodified	_SYTFQTFSF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;ENST00000462685.1_1_2:74173872-74185284:+|nuORF;ENST00000493055.1_1_2:74154037-74174034:+|nuORF;nc|ENSG00000114956|Q16854-4|DGUOK;nc|ENSG00000114956|Q16854-2|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.5044027192	1	1127.5044	1126.49713	1.6425	0.001852	3.5804	0.004037	5.223	0.0058889	1127.5083378087832	30.704	0.12068	30.704	30.68	30.801	0	69	64	1.5776473	0.037085176	1.5776473	319.82285	0	7.517975						172	6	3	NaN	NaN	NaN	0.013696	1	13948	13948		81.699	37.061	1	16716			25780	1981	14834	15260	20541	20541					-0.06106242547616603
SYTFQTFSF	9	Unmodified	_SYTFQTFSF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;ENST00000462685.1_1_2:74173872-74185284:+|nuORF;ENST00000493055.1_1_2:74154037-74174034:+|nuORF;nc|ENSG00000114956|Q16854-4|DGUOK;nc|ENSG00000114956|Q16854-2|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1127.5044027192	1	1127.5044	1126.49713	0.93449	0.0010536	3.8121	0.0042981	4.7466	0.0053518	1127.508918295151	30.703	0.16887	30.698	30.649	30.818	-0.0057564	66	64	1.579413	0.03708136	1.5778936	320.1808	0	7.5171814						239	8	3	NaN	NaN	NaN	0.013959	1	13507	13507		80.901	45.604	1	20401			25781	1981	14834	15260	20542	20542					-0.06106242547616603
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.29275641545	2	586.292756	1170.57096	2.474	0.0014505	-6.8349	-0.0040073	-4.361	-0.0025568	586.2886616560692	25.588	0.21712	25.588	25.539	25.757	0	1170	124	0.91673553	0.0753178	0.91673553	371.5106	0	30.522797						691	10	5	NaN	NaN	NaN	0.030669	1	15503	15503		58.235	30.939	1	152580			25782	1125	14835	15261	20543	20543					-0.007502743853137872
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.29275641545	2	586.292756	1170.57096	2.1575	0.0012649	-5.7091	-0.0033472	-3.5516	-0.0020823	586.2889561944304	25.612	0.21712	25.6	25.552	25.769	-0.0116	1170	112	0.91673553	0.06796235	0.9152161	371.51056	0	27.541992						621	10	3	NaN	NaN	NaN	0.14787	1	14961	14961		28.896	13.72	1	148810			25783	1125	14835	15261	20544	20544					-0.007502743853137872
SYTRHCRPLY	10	Unmodified	_SYTRHCRPLY_					0	0	0			REV__ENST00000528797.5_1_11:57414222-57414580:-|nuORF	REV__ENST00000528797.5_1_11:57414222-57414580:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.5486347585	3	432.548635	1294.62407	1.6639	0.0007197	-7.5645	-0.003272	-5.9006	-0.0025523	432.5459269604743	23.079	0.16854	23.079	22.983	23.152	0	1434	61	0.75435036	0.037077844	0.75435036	458.03918	0	22.51355						171	8	2	NaN	NaN	NaN	0.69717	1	18675	18675		4.2489	0	1	17762	+		25784	10447	14836	15262	20545	20545					-0.011452198742745168
SYTSGLETL	9	Unmodified	_SYTSGLETL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.4727682398001	1	970.472768	969.465492	2.3848	0.0023144	-0.16424	-0.00015939	2.2206	0.002155	970.4727196572812	23.73	0.26505	23.73	23.682	23.947	0	261	160	1.4642475	0.09431374	1.4642475	297.41592	0	19.15689						714	12	3	NaN	NaN	NaN	1.2958E-07	1	7581	7581		136.74	78.14	1	333580			25785	1143	14837	15263	20546	20546					-0.020462353015659573
SYTSGLETL	9	Unmodified	_SYTSGLETL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4727682398001	1	970.472768	969.465492	2.1383	0.0020752	0.0016955	1.6454E-06	2.14	0.0020768	970.473060637137	23.73	0.43393	23.717	23.645	24.079	-0.013048	258	178	1.4660252	0.10500193	1.4645058	297.777	0	21.32785						779	19	3	NaN	NaN	NaN	3.4198E-12	1	7436	7436		150.79	76.463	1	338470			25786	1143	14837	15263	20547	20547					-0.020462353015659573
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7587464226	2	537.758746	1073.50294	2.1123	0.0011359	-2.5607	-0.001377	-0.44834	-0.0002411	537.7572955824267	16.83	0.23981	16.83	16.782	17.021	0	1272	76	0.854179	0.046084464	0.854179	346.5236	0	18.695587						402	11	4	NaN	NaN	NaN	0.11656	1	11696	11696		33.425	4.5297	1	78354			25787	1880	14838	15264	20548	20548					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7587464226	2	537.758746	1073.50294	1.5845	0.0008521	-1.4502	-0.00077987	0.13431	7.2225E-05	537.7578581787625	16.85	0.21568	16.837	16.765	16.981	-0.013294	1272	73	0.854179	0.044248343	0.8526596	346.5236	0	17.950653						364	10	4	NaN	NaN	NaN	0.010404	1	11394	11394		91.563	49.779	1	84714			25788	1880	14838	15264	20549	20549					-0.030871440359533153
SYTTTTTI	8	Unmodified	_SYTTTTTI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	887.435654452	1	887.435654	886.428378	2.5991	0.0023065	-0.057128	-5.0697E-05	2.542	0.0022558	887.4348064666232	18.436	0.095894	18.436	18.412	18.508	0	414	40	1.3733286	0.02323699	1.3733286	279.3145	0	4.726074						77	5	2	NaN	NaN	NaN	0.65075	1	5891	5891		22.126	9.5385	1	3849.8			25789	1149	14839	15265	20550	20550					-0.019379068473313055
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5142391240001	1	1050.51424	1049.50696	1.8213	0.0019133	2.3064	0.0024229	4.1277	0.0043362	1050.5143839067289	31.742	0.19307	31.742	31.718	31.911	0	138	100	1.5369828	0.058431387	1.5369828	311.85596	0	11.855804						575	9	4	NaN	NaN	NaN	0.0040938	1	10608	10608		104.71	37.557	1	121570			25790	999	14840	15266	20551	20551					-0.015810545422255018
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		ENSG00000087086|ENST00000331825|FTL;FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5142391240001	1	1050.51424	1049.50696	1.0225	0.0010741	3.1144	0.0032718	4.1369	0.0043459	1050.51476483903	31.741	0.26549	31.737	31.688	31.954	-0.0044155	135	100	1.5387528	0.05841899	1.5372335	312.2151	0	11.8532715						627	12	4	NaN	NaN	NaN	0.0072287	1	10387	10387		98.041	18.842	1	126670			25791	999	14840	15266	20552	20552					-0.015810545422255018
SYVAGAAA	8	Unmodified	_SYVAGAAA_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3515308921	1	709.351531	708.344254	1.1416	0.0008098	4.9673	0.0035236	6.1089	0.0043334	709.3543757773836	30.366	0.19304	30.366	30.318	30.511	0	705	76	1.1990347	0.045142293	1.1990347	244.80064	0	9.216461						235	9	3	NaN	NaN	NaN	0.83849	1	3384	3384		4.0537	0.90034	1	24350			25792	13688	14841	15267	20553	20553					-0.02158393153581528
SYVAGIAWF	9	Unmodified	_SYVAGIAWF_					0	0	0		ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENSG00000197858|ENST00000355091|GPAA1	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5090941666	1	1013.50909	1012.50182	1.3725	0.001391	1.0715	0.001086	2.444	0.002477	1013.5095009844449	33.504	0.096516	33.504	33.456	33.552	0	174	115	1.5157272	0.067409635	1.5157272	307.68893	0	13.6839905						332	5	4	NaN	NaN	NaN	0.011118	1	9076	9076		89.521	47.737	1	69561			25793	5735	14842	15268	20554	20554					-0.003933136141995419
SYVAGIAWF	9	Unmodified	_SYVAGIAWF_					0	0	0		ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENSG00000197858|ENST00000355091|GPAA1	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5090941666	1	1013.50909	1012.50182	1.0226	0.0010364	0.45424	0.00046038	1.4768	0.0014967	1013.5093733048548	33.502	0.096523	33.501	33.452	33.549	-0.0018463	171	97	1.5174994	0.056747913	1.51598	308.04874	0	11.519684						345	5	4	NaN	NaN	NaN	0.011118	1	8900	8900		89.521	42.481	1	66011			25794	5735	14842	15268	20555	20555					-0.003933136141995419
SYVAGLPRF	9	Unmodified	_SYVAGLPRF_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.276909386	2	505.276909	1008.53927	1.6917	0.00085476	-2.8662	-0.0014482	-1.1746	-0.00059348	505.27593524033745	23.947	0.26515	23.947	23.803	24.068	0	1317	76	0.8265074	0.0461244	0.8265074	335.57123	0	18.72702						368	12	3	NaN	NaN	NaN	0.10363	1	8927	8927		35.296	4.6864	1	47377			25795	2955	14843	15269	20556	20556					0.03533777651421133
SYVDKNLELF	10	Unmodified	_SYVDKNLELF_					0	0	0		nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3164284769999	2	614.316428	1226.6183	1.4576	0.0008954	-4.0384	-0.0024809	-2.5809	-0.0015855	614.3141612743481	25.636	0.14478	25.636	25.612	25.757	0	1143	52	0.9332562	0.031195581	0.9332562	378.0043	0	12.6354065						213	7	3	NaN	NaN	NaN	0.060038	1	17153	17153		51.467	18.689	1	32699			25796	3056	14844	15270	20557	20557					0.01405960095030423
SYVDKNLELF	10	Unmodified	_SYVDKNLELF_					0	0	0		nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	nc|ENSG00000136925|Q5T7W7-2|TSTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.3164284769999	2	614.316428	1226.6183	1.4756	0.00090649	-3.9469	-0.0024246	-2.4713	-0.0015181	614.3145367028944	25.66	0.12062	25.648	25.624	25.745	-0.011602	1146	55	0.93142134	0.03302884	0.9299019	377.2611	0	13.37793						249	6	4	NaN	NaN	NaN	0.060038	1	16462	16462		51.467	23.678	1	35918			25797	3056	14844	15270	20558	20558					0.01405960095030423
SYVGIALTL	9	Unmodified	_SYVGIALTL_					0	0	0		ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5400599440001	1	936.54006	935.532783	1.1973	0.0011213	0.31761	0.00029746	1.5149	0.0014188	936.540190661633	31.403	0.14477	31.398	31.35	31.495	-0.0050716	243	82	1.4749115	0.047985315	1.473392	299.7342	0	9.751678						256	7	3	NaN	NaN	NaN	0.025843	1	6602	6602		64.55	5.9508	1	33346			25798	1186	14845	15271	20559	20559					0.06243839700039189
SYVGIATLI	9	Unmodified	_SYVGIATLI_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5400599440001	1	936.54006	935.532783	0.81016	0.00075874	1.2265	0.0011486	2.0366	0.0019074	936.5412954783188	31.404	0.14481	31.404	31.356	31.501	0	249	82	1.4713576	0.04799044	1.4713576	299.01196	0	9.752716						264	7	3	NaN	NaN	NaN	0.10956	1	6740	6740		34.439	0	1	36355			25799	995	14846	15272	20560	20560					0.06243839700039189
SYVGLVYMF	9	Unmodified	_SYVGLVYMF_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.5277806981999	1	1078.52778	1077.5205	1.4644	0.0015794	-1.1249	-0.0012132	0.33956	0.00036622	1078.5293640908903	34.638	0.14468	34.638	34.614	34.758	0	78	79	1.5723488	0.045936942	1.5723488	318.92416	0	9.317535						373	7	4	NaN	NaN	NaN	0.011118	1	11857	11857		89.521	67.395	1	48928			25800	1709	14847	15273	20561	20561					-0.015155200346498532
SYVGLVYMF	9	Unmodified	_SYVGLVYMF_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5277806981999	1	1078.52778	1077.5205	1.686	0.0018184	2.7976	0.0030173	4.4836	0.0048357	1078.5302899773008	34.636	0.19281	34.636	34.587	34.78	-0.0006485	75	76	1.5741152	0.044167757	1.5725957	319.2824	0	8.958679						216	9	2	NaN	NaN	NaN	0.020004	1	11549	11549		71.993	24.953	1	42792			25801	1709	14847	15273	20562	20562					-0.015155200346498532
SYVGSLYVW	9	Unmodified	_SYVGSLYVW_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5302235391998	1	1073.53022	1072.52295	1.3119	0.0014084	-0.21236	-0.00022798	1.0995	0.0011804	1073.5301186380523	32.249	0.16888	32.249	32.128	32.297	0	93	76	1.5635144	0.044205308	1.5635144	317.1509	0	8.966797						208	8	2	NaN	NaN	NaN	0.20577	1	11660	11660		24.961	9.4983	1	19614			25802	4905	14848	15274	20563	20563					-0.010413483053525852
SYVGSLYVW	9	Unmodified	_SYVGSLYVW_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5302235391998	1	1073.53022	1072.52295	1.4876	0.001597	0.46484	0.00049902	1.9524	0.002096	1073.5300520077872	30.946	0.31377	30.946	30.897	31.211	0	99	139	1.5599792	0.08137655	1.5599792	316.43384	0	16.506805						1119	14	5	NaN	NaN	NaN	0.00050979	1	11661	11661		115.51	70.871	1	386470			25803	4905	14848	15274	20564	20564					-0.010413483053525852
SYVGSLYVW	9	Unmodified	_SYVGSLYVW_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.5302235391998	1	1073.53022	1072.52295	1.8102	0.0019434	-0.20772	-0.000223	1.6025	0.0017204	1073.5296013471286	30.945	0.33788	30.94	30.891	31.229	-0.0050716	96	148	1.5617468	0.08669758	1.5602274	316.7924	0	17.58612						1154	15	4	NaN	NaN	NaN	0.0023856	1	11359	11359		109.86	65.219	1	407050			25804	4905	14848	15274	20565	20565					-0.010413483053525852
SYVGSLYVW	9	Unmodified						0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1073.53022	1072.52295	0.89057	0.00095605	1.9014	0.0020412	2.792	0.0029973	1073.5320666165674	32.151	0.14478	32.148	32.051	32.196	-0.0037613	93	67	1.5635144	0.038894534	1.5619949	317.1509		7.8895264	-0.050679	0.0012957	-0.00075972	NaN	24.961	142	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11837			25805	4905	14848	15274							-0.010413483053525852
SYVGVTLLF	9	Unmodified	_SYVGVTLLF_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5557100082001	1	998.55571	997.548434	2.0434	0.0020405	0.5882	0.00058735	2.6316	0.0026278	998.5549486515695	34.493	0.24121	34.493	34.348	34.589	0	165	124	1.5210435	0.07267356	1.5210435	308.83035	0	14.755524						445	11	3	NaN	NaN	NaN	0.021105	1	8492	8492		70.6	26.297	1	68262			25806	2969	14849	15275	20566	20566					0.049561262170982445
SYVGVTLLF	9	Unmodified	_SYVGVTLLF_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5557100082001	1	998.55571	997.548434	1.4746	0.0014724	0.69161	0.00069061	2.1662	0.0021631	998.5556981971267	34.468	0.12059	34.467	34.443	34.563	-0.0006485	165	103	1.5210435	0.060243487	1.5195241	308.83035	0	12.2317505						390	6	3	NaN	NaN	NaN	0.025843	1	8314	8314		64.55	14.717	1	65863			25807	2969	14849	15275	20567	20567					0.049561262170982445
SYVHYVFRL	9	Unmodified	_SYVHYVFRL_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.31656586275	2	592.316566	1182.61858	1.5837	0.00093806	-2.6815	-0.0015883	-1.0978	-0.00065023	592.316809818519	22.694	0.14472	22.694	22.67	22.814	0	1131	52	0.94059354	0.031185508	0.94059354	381.13388	0	12.636566						135	7	3	NaN	NaN	NaN	0.16171	1	15930	15930		27.789	18.043	1	12944			25808	270	14850	15276	20568	20568					0.034574246055626645
SYVHYVFRL	9	Unmodified						0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.316566	1182.61858	1.5579	0.0009228	-4.1089	-0.0024338	-2.551	-0.001511	592.3142856582904	22.91	0.096512	22.896	22.848	22.945	-0.01354	1125	28	0.9442611	0.01650107	0.94274163	382.62		6.68631	0.10139	-0.00092569	0.001074	NaN	27.789	51	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4665.7			25809	270	14850	15276							0.034574246055626645
SYVLKTVLL	9	Unmodified	_SYVLKTVLL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.3260679165501	2	518.326068	1034.63758	2.2006	0.0011406	-1.1142	-0.00057754	1.0864	0.00056309	518.325437798216	26.167	0.096519	26.167	26.143	26.239	0	1215	55	0.8891654	0.03311813	0.8891654	360.88846	0	13.441772						165	5	3	NaN	NaN	NaN	0.019939	1	9993	9993		72.076	33.945	1	29646			25810	5932	14851	15277	20569	20569					0.12164961176608813
SYVLKTVLL	9	Unmodified	_SYVLKTVLL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.3260679165501	2	518.326068	1034.63758	1.741	0.00090241	0.033958	1.7601E-05	1.775	0.00092001	518.3264056885779	26.191	0.096504	26.18	26.156	26.252	-0.011137	1215	61	0.8891654	0.036801934	0.88764596	360.88846	0	14.93689						190	5	4	NaN	NaN	NaN	0.097143	1	9782	9782		36.235	15.786	1	31383			25811	5932	14851	15277	20570	20570					0.12164961176608813
SYVNHLYVI	9	Unmodified	_SYVNHLYVI_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2952991044001	2	554.295299	1106.57605	1.1638	0.00064508	-0.33793	-0.00018731	0.82585	0.00045777	554.2948953567897	23.995	0.12061	23.995	23.947	24.068	0	1191	43	0.90387505	0.025736272	0.90387505	366.54538	0	10.436768						181	6	5	NaN	NaN	NaN	0.13602	1	13134	13134		30.61	1.7145	1	22777			25812	3002	14852	15278	20571	20571					0.027020294773365094
SYVNHLYVI	9	Unmodified	_SYVNHLYVI_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2952991044001	2	554.295299	1106.57605	1.4118	0.00078255	-0.41064	-0.00022762	1.0012	0.00055493	554.2945862992985	24.043	0.14477	24.031	23.982	24.127	-0.012749	1191	58	0.90387505	0.034933507	0.9023556	366.54538	0	14.166473						162	7	3	NaN	NaN	NaN	0.048656	1	12764	12764		47.482	21.73	1	21188			25813	3002	14852	15278	20572	20572					0.027020294773365094
SYVQMYVK	8	Unmodified	_SYVQMYVK_					0	0	0			REV__ENSG00000181240|ENST00000321510|SLC25A41	REV__ENSG00000181240|ENST00000321510|SLC25A41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.25732803685	2	509.257328	1016.5001	1.4852	0.00075634	-4.0064	-0.0020403	-2.5212	-0.001284	509.25580084038415	32.587	0.12067	32.587	32.539	32.659	0	1302	43	0.8357362	0.025831044	0.8357362	339.28247	0	10.486572						120	6	3	NaN	NaN	NaN	0.78264	1	9231	9231		11.548	0.94349	1	12531	+		25814	10840	14853	15279	20573	20573					-0.007486906944563998
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5877384181001	1	1085.58774	1084.58046	1.1206	0.0012165	-4.955	-0.0053791	-3.8344	-0.0041626	1085.5808018035073	30.245	0.048269	30.238	30.238	30.287	-0.0064106	60	76	1.582944	0.044163108	1.5814246	321.04678	0	8.957001						121	3	2	NaN	NaN	NaN	0.33629	1	11864	11864		16.584	6.8382	1	9708			25815	5871	14854	15280	20574	20574					0.04155493900248075
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.4996516923	1	1044.49965	1043.49238	2.3338	0.0024376	-0.59112	-0.00061743	1.7427	0.0018202	1044.498833898943	23.176	0.21699	23.176	23.103	23.32	0	192	115	1.5050892	0.06745255	1.5050892	305.40753	0	13.687225						441	10	4	NaN	NaN	NaN	2.164E-05	1	10350	10350		127.69	80.204	1	66811			25816	793	14855	15281	20575	20575					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.4996516923	1	1044.49965	1043.49238	1.8458	0.001928	-0.29566	-0.00030881	1.5502	0.0016192	1044.4993713231654	23.199	0.21715	23.186	23.114	23.331	-0.013294	189	118	1.5068626	0.06923127	1.5053432	305.7674	0	14.048187						440	10	4	NaN	NaN	NaN	7.9125E-08	1	10146	10146		138.61	74.652	1	65336			25817	793	14855	15281	20576	20576					-0.027631266903881624
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2978417933501	2	558.297842	1114.58113	1.938	0.001082	-0.75265	-0.0004202	1.1854	0.00066179	558.2976346368354	27.929	0.2413	27.929	27.857	28.098	0	1221	139	0.885486	0.084671974	0.885486	359.05643	0	34.33368						679	11	4	NaN	NaN	NaN	0.010878	1	13466	13466		90.252	47.257	1	246620			25818	4710	14856	15282	20577	20577					0.028423333399587136
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2978417933501	2	558.297842	1114.58113	1.4626	0.00081654	-0.022798	-1.2728E-05	1.4398	0.00080381	558.2982768324059	27.952	0.3379	27.943	27.822	28.16	-0.009552	1218	139	0.8873258	0.084653616	0.8858064	359.80243	0	34.326263						782	15	5	NaN	NaN	NaN	3.7692E-08	1	13081	13081		140.15	84.733	1	255910			25819	4710	14856	15282	20578	20578					0.028423333399587136
SYVSDCSNAF	10	Unmodified	_SYVSDCSNAF_					0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.71876398235	2	546.718764	1091.42298	1.146	0.00062654	-2.3733	-0.0012976	-1.2273	-0.00067101	547.2184164175659	32.9	0.26552	32.9	32.852	33.118	0	1293	58	0.84127116	0.035046935	0.84127116	341.21613	0	14.214905						476	12	6	NaN	NaN	NaN	0.60686	1	12443	12443		14.425	1.4222	1	109680	+		25820	9784	14857	15283	20579	20579					-0.11907953701461338
SYVVAMETF	9	Unmodified	_SYVVAMETF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.486309814	1	1046.48631	1045.47903	2.0883	0.0021854	0.3902	0.00040834	2.4786	0.0025938	1046.4865834189188	27.808	0.12065	27.808	27.784	27.905	0	162	82	1.5228153	0.047832847	1.5228153	308.9968	0	9.705841						287	6	3	NaN	NaN	NaN	8.7755E-05	1	10432	10432		123.66	76.522	1	71064			25821	4583	14858	15284	20580	20580					-0.04188700793974931
SYVVAMETF	9	Unmodified	_SYVVAMETF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.486309814	1	1046.48631	1045.47903	1.3141	0.0013751	0.83455	0.00087334	2.1486	0.0022485	1046.487367699962	27.808	0.21724	27.798	27.774	27.991	-0.009552	162	91	1.5228153	0.053150415	1.5212959	308.9968	0	10.784851						355	10	4	NaN	NaN	NaN	3.4198E-12	1	10223	10223		150.79	106.49	1	73966			25822	4583	14858	15284	20581	20581					-0.04188700793974931
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(130)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.4812244360999	1	1062.48122	1061.47395	2.1053	0.0022369	-0.43564	-0.00046286	1.6697	0.001774	1062.4812853932297	23.538	0.16868	23.538	23.489	23.658	0	159	61	1.5245869	0.035429835	1.5245869	309.29556	0	7.1877136						249	8	4	NaN	NaN	NaN	2.9468E-07	1	11163	11163		130.62	80.586	1	27442			25823	4583	14858	15285	20582	20582		489			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(45)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.74425045135	2	531.74425	1061.47395	1.3354	0.00071008	-1.2648	-0.00067254	0.070604	3.7543E-05	531.7430926248835	23.537	0.19291	23.524	23.476	23.669	-0.01305	1308	79	0.83204526	0.047956467	0.8305259	337.5928	0	19.457794						227	9	3	NaN	NaN	NaN	0.055351	1	10914	10914		44.638	25.52	1	33237			25824	4583	14858	15285	20583	20583		489			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(93)ETF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.4812244360999	1	1062.48122	1061.47395	1.8689	0.0019856	-0.092398	-9.8171E-05	1.7765	0.0018875	1062.4815269822584	23.537	0.16885	23.524	23.476	23.645	-0.01305	156	67	1.5263584	0.038972855	1.5248389	309.65494	0	7.906494						247	8	3	NaN	NaN	NaN	0.0094682	1	10915	10915		93.472	61.911	1	30300			25825	4583	14858	15285	20584	20584		489			-0.05433004656606499
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.87685726243336	3	408.876857	1223.60874	0.80804	0.00033039	-0.15628	-6.39E-05	0.65176	0.00026649	408.8766219409301	20.959	0.24077	20.945	20.873	21.113	-0.014088	1440	43	0.7506418	0.025962949	0.7491224	456.06604	0	15.774231						262	11	3	NaN	NaN	NaN	0.23358	1	16374	16374		23.177	5.9782	1	34874			25826	4113	14859	15286	20585	20585					0.005882366001969785
SYVWRTYHL	9	Unmodified	_SYVWRTYHL_					0	0	0		ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000397876.6_1_16:106379-107140:+|nuORF	ENST00000397876.6_1_16:106379-107140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8116476603501	2	612.811648	1223.60874	0.55846	0.00034223	0.23485	0.00014392	0.79331	0.00048615	612.8110625492811	20.935	0.21672	20.921	20.873	21.089	-0.014088	1137	64	0.9369253	0.038539886	0.93540585	379.5008	0	15.610565						282	10	4	NaN	NaN	NaN	0.046683	1	16375	16375		53.652	37.067	1	61936			25827	4113	14859	15286	20586	20586					0.005882366001969785
SYYGPLNL	8	Unmodified	_SYYGPLNL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.461809623	1	926.46181	925.454533	1.692	0.0015675	-0.68031	-0.00063028	1.0117	0.00093726	926.461356047278	27.519	0.072397	27.519	27.471	27.543	0	348	91	1.412609	0.053467393	1.412609	287.11832	0	10.867432						83	4	2	NaN	NaN	NaN	0.528	1	6501	6501		29.598	14.423	1	7670.7			25828	3448	14860	15287	20587	20587					-0.011175928851912431
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.33462123015	2	644.334621	1286.65469	0.91486	0.00058948	-1.616	-0.0010413	-0.70116	-0.00045178	644.3328788305608	38.468	0.12009	38.468	38.372	38.492	0	1107	40	0.9552588	0.02382207	0.9552588	386.7152	0	9.643799						142	6	3	NaN	NaN	NaN	0.6085	1	18544	18544		13.463	5.8755	1	12489			25829	3448	14861	15288	20588	20588					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.33462123015	2	644.334621	1286.65469	1.7155	0.0011054	-2.1498	-0.0013852	-0.43432	-0.00027985	644.3332254698539	37.386	0.43328	37.386	37.241	37.675	0	1104	58	0.9570911	0.0348168	0.9570911	387.45697	0	14.094818						730	19	4	NaN	NaN	NaN	9.3713E-16	1	18545	18545		123.53	86.299	1	371890			25830	3448	14861	15288	20589	20589					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.33462123015	2	644.334621	1286.65469	2.0217	0.0013027	-2.9305	-0.0018882	-0.90883	-0.00058559	644.3325675158555	37.383	0.43332	37.386	37.266	37.699	0.0028229	1104	61	0.9570911	0.03664732	0.95557165	387.45697	0	14.835846						732	19	5	NaN	NaN	NaN	1.7179999999999999E-22	1	17716	17716		147.08	99.082	1	311910			25831	3448	14861	15288	20590	20590					0.022828369917533564
SYYGPLNLLTF	11	Unmodified	_SYYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.33462123015	2	644.334621	1286.65469	2.2004	0.0014178	-3.043	-0.0019607	-0.84263	-0.00054293	644.8338026770805	38.345	0.14425	38.349	38.229	38.373	0.0040245	1101	34	0.95892316	0.020150542	0.9574037	388.19864	0	8.157532						81	7	2	NaN	NaN	NaN	0.0071373	1	17717	17717		72.076	42.041	1	7355.2			25832	3448	14861	15288	20591	20591					0.022828369917533564
SYYKESEKDF	10	Unmodified	_SYYKESEKDF_					0	0	0			REV__ENSG00000165895|ENST00000298815|ARHGAP42	REV__ENSG00000165895|ENST00000298815|ARHGAP42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.2931503459499	2	648.29315	1294.57175	1.3852	0.00089805	-4.7286	-0.0030655	-3.3434	-0.0021675	648.289261641702	34.903	0.048229	34.903	34.903	34.951	0	1128	28	0.9424274	0.016506433	0.9424274	381.49594	0	6.6818237						50	3	3	NaN	NaN	NaN	0.77729	1	18667	18667		1.1768	0.48567	1	2616.7	+		25833	10405	14862	15289	20592	20592					-0.06375524526924892
SYYSSPFAF	9	Unmodified	_SYYSSPFAF_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.4672889314	1	1068.46729	1067.46001	1.7922	0.0019149	-0.34557	-0.00036923	1.4467	0.0015457	1068.4671638720852	29.691	0.14479	29.691	29.642	29.787	0	108	55	1.5546752	0.031832814	1.5546752	315.37692	0	6.4575195						139	7	2	NaN	NaN	NaN	0.14301	1	11431	11431		29.598	0.70274	1	17165			25834	5884	14863	15290	20593	20593					-0.07101914093368578
SYYSSPFAF	9	Unmodified						0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1068.46729	1067.46001	0.85869	0.00091748	0.67291	0.00071899	1.5316	0.0016365	1068.4675554010985	29.69	0.193	29.683	29.659	29.852	-0.0070648	108	55	1.5546752	0.031829476	1.5531558	315.37692		6.4568176	-0.0039612	0.00052136	-0.00075972	NaN	29.598	181	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18657			25835	5884	14863	15290							-0.07101914093368578
TAAAAGEVL	9	Unmodified	_TAAAAGEVL_					0	0	0		nc|ENSG00000124782|Q92766-4|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-4|RREB1	nc|ENSG00000124782|Q92766-4|RREB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.4305094946	1	802.430509	801.423233	1.9685	0.0015796	-1.3228	-0.0010614	0.64571	0.00051813	802.4299153274659	19.396	0.16796	19.396	19.348	19.516	0	513	46	1.3142352	0.02690649	1.3142352	267.7287	0	5.4812317						141	8	3	NaN	NaN	NaN	0.043119	1	4762	4762		49.833	22.537	1	11138			25836	2436	14864	15291	20594	20594					0.01457834080702014
TAAAAGEVL	9	Unmodified	_TAAAAGEVL_					0	0	0		nc|ENSG00000124782|Q92766-4|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-4|RREB1	nc|ENSG00000124782|Q92766-4|RREB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	802.4305094946	1	802.430509	801.423233	1.7887	0.0014353	-0.85656	-0.00068733	0.93218	0.00074801	802.4298590262554	19.418	0.16835	19.404	19.356	19.524	-0.014141	510	52	1.316029	0.030497313	1.3145095	268.0941	0	6.212738						134	8	2	NaN	NaN	NaN	0.03623	1	4671	4671		52.758	13.299	1	11267			25837	2436	14864	15291	20595	20595					0.01457834080702014
TAAATEEVSP	10	Unmodified	_TAAATEEVSP_					0	0	0			REV__ENST00000579200.1_1_18:72775002-72776421:+|nuORF	REV__ENST00000579200.1_1_18:72775002-72776421:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.23510415079994	2	488.235104	974.455655	1.518	0.00074113	-8.631	-0.0042139	-7.113	-0.0034728	488.2305092292495	14.669	0.12007	14.669	14.621	14.741	0	1371	55	0.79324204	0.033283353	0.79324204	322.2167	0	13.519775						84	6	2	NaN	NaN	NaN	0.69717	1	7727	7727		8.2448	1.9946	1	4994.9	+		25838	11297	14865	15292	20596	20596					-0.03259423306951703
TAADDHQAL	9	Unmodified	_TAADDHQAL_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.2197884375999	2	471.219788	940.425024	0.27404	0.00012913	-0.22975	-0.00010826	0.044291	2.0871E-05	471.2193482074437	13.11	0.095851	13.1	13.076	13.172	-0.00947	1362	37	0.79879075	0.022191346	0.7972713	324.6339	0	9.018707						73	5	2	NaN	NaN	NaN	0.25548	1	6684	6684		21.771	8.7682	1	6715.4			25839	3020	14866	15293	20597	20597					-0.047571569013484805
TAADDHQAL	9	Unmodified						0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	471.219788	940.425024	1.0843	0.00051096	-0.73159	-0.00034474	0.35275	0.00016622	471.21907666683336	13.084	0.096044	13.084	13.084	13.18	0	1362	34	0.79879075	0.020343125	0.79879075	324.6339		8.267578	-0.0079853	-0.00016413	0.00075972	NaN	21.771	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5528.8			25840	3020	14866	15293							-0.047571569013484805
TAADDSSVKL	10	Unmodified	_TAADDSSVKL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.75620373365	2	503.756204	1005.49785	2.0744	0.001045	-1.2898	-0.00064973	0.78467	0.00039528	503.75508088007285	16.086	0.38402	16.086	16.014	16.398	0	1350	112	0.80618626	0.06830847	0.80618626	327.33392	0	27.735138						799	17	4	NaN	NaN	NaN	0.31689	1	8792	8792		27.046	10.188	1	206870			25841	1753	14867	15294	20598	20598					-0.004674478985634778
TAADDSSVKL	10	Unmodified	_TAADDSSVKL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.75620373365	2	503.756204	1005.49785	2.2468	0.0011319	-1.1325	-0.0005705	1.1143	0.00056136	503.7551619552452	16.083	0.28767	16.07	15.975	16.262	-0.012611	1350	112	0.80618626	0.06830847	0.8046668	327.33392	0	27.735138						807	13	4	NaN	NaN	NaN	0.019258	1	8621	8621		63.995	36.206	1	219410			25842	1753	14867	15294	20599	20599					-0.004674478985634778
TAADELEAF	9	Unmodified	_TAADELEAF_					0	0	0		ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6	ENSG00000196642|ENST00000311502|RABL6	ENSG00000196642|ENST00000311502|RABL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4414681113999	1	966.441468	965.434192	1.8567	0.0017944	0.15499	0.00014979	2.0117	0.0019442	966.4404461471294	25.226	0.072378	25.214	25.189	25.262	-0.012011	327	40	1.425088	0.023165584	1.4235686	289.47885	0	4.7056274						78	4	2	NaN	NaN	NaN	0.16171	1	7340	7340		27.789	12.613	1	6425.6			25843	5647	14868	15295	20600	20600					-0.04990808335674046
TAAEEAEAL	9	Unmodified	_TAAEEAEAL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4258180471999	1	904.425818	903.418542	2.5241	0.0022829	4.2101	0.0038077	6.7342	0.0060906	904.4302908817608	18.266	0.28805	18.252	18.156	18.444	-0.01395	423	61	1.3679651	0.035762668	1.3664457	278.14365	0	7.271515						277	13	2	NaN	NaN	NaN	0.062072	1	6013	6013		41.785	5.198	1	37566			25844	2542	14869	15296	20601	20601					-0.03703094852721733
TAAELEEVL	9	Unmodified	_TAAELEEVL_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5040683682001	1	974.504068	973.496792	2.1938	0.0021379	-2.3163	-0.0022573	-0.12252	-0.00011939	974.5020569278856	26.336	0.16897	26.336	26.288	26.456	0	294	67	1.4446791	0.039151073	1.4446791	293.42422	0	7.9518433						181	8	2	NaN	NaN	NaN	0.030391	1	7701	7701		58.599	5.8409	1	21323			25845	3229	14870	15297	20602	20602					0.008983377325421316
TAAELEEVL	9	Unmodified	_TAAELEEVL_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5040683682001	1	974.504068	973.496792	1.7442	0.0016998	-2.0869	-0.0020337	-0.34265	-0.00033391	974.5018558094199	26.336	0.19303	26.324	26.276	26.469	-0.011137	291	70	1.446459	0.040928483	1.4449396	293.78574	0	8.312866						249	9	3	NaN	NaN	NaN	0.20577	1	7552	7552		24.961	0	1	22670			25846	3229	14870	15297	20603	20603					0.008983377325421316
TAAENEFVAL	10	Unmodified	_TAAENEFVAL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678	ENSG00000170454|ENST00000252245|KRT75	ENSG00000170454|ENST00000252245|KRT75	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5258664428	1	1064.52587	1063.51859	2.5374	0.0027011	-2.5745	-0.0027407	-0.037176	-3.9574E-05	1064.5226180603074	26.191	0.28962	26.191	26.167	26.456	0	183	121	1.510409	0.0708673	1.510409	306.4117	0	14.376617						658	13	4	NaN	NaN	NaN	0.095478	1	11275	11275		46.588	0	1	121050		+	25847	182	14871	15298	20604	20604					-0.010628575189002731
TAAENEFVAL	10	Unmodified	_TAAENEFVAL_					0	0	0		ENSG00000170454|ENST00000252245|KRT75;CON__O95678	ENSG00000170454|ENST00000252245|KRT75	ENSG00000170454|ENST00000252245|KRT75	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5258664428	1	1064.52587	1063.51859	1.9314	0.002056	-3.5146	-0.0037414	-1.5832	-0.0016854	1065.523930665141	26.215	0.38609	26.204	26.035	26.421	-0.011137	180	115	1.5121819	0.06733811	1.5106624	306.7714	0	13.660675						813	17	4	NaN	NaN	NaN	0.032813	1	11013	11013		58.398	0	1	129750		+	25848	182	14871	15298	20605	20605					-0.010628575189002731
TAAENEFVT	9	Unmodified	_TAAENEFVT_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.4523671487001	1	981.452367	980.445091	2.1366	0.002097	-1.0613	-0.0010416	1.0754	0.0010554	981.45130958082	18.964	0.11998	18.964	18.94	19.06	0	339	67	1.4179583	0.03921354	1.4179583	287.96854	0	7.963745						222	6	3	NaN	NaN	NaN	0.041983	1	7892	7892		50.315	5.6766	1	25667		+	25849	189;197	14872	15299	20606	20606					-0.045914059613664904
TAAENEFVT	9	Unmodified	_TAAENEFVT_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.4523671487001	1	981.452367	980.445091	1.8831	0.0018481	-0.36749	-0.00036067	1.5156	0.0014875	981.4517530911941	18.986	0.19218	18.972	18.924	19.116	-0.014059	336	73	1.419741	0.042769313	1.4182216	288.33057	0	8.685883						254	9	2	NaN	NaN	NaN	0.017076	1	7724	7724		75.698	36.24	1	30021		+	25850	189;197	14872	15299	20607	20607					-0.045914059613664904
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5364311291	1	1094.53643	1093.52915	3.3291	0.0036438	-0.26609	-0.00029124	3.063	0.0033526	1094.5362694647522	26.07	0.48269	26.07	25.998	26.481	0	135	1024	1.5387528	0.61329466	1.5387528	312.052	0	124.37334						2929	21	5	NaN	NaN	NaN	0.0037187	1	12543	12543		80.241	41.201	1	3093100		+	25851	189;197	14873	15300	20608	20608					-0.01386874864465426
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7718537978501	2	547.771854	1093.52915	2.1067	0.001154	1.1493	0.00062954	3.256	0.0017835	547.7728782661612	26.07	0.1931	26.07	26.022	26.215	0	1221	127	0.885486	0.077317536	0.885486	359.14084	0	31.358917						723	9	3	NaN	NaN	NaN	0.068403	1	12544	12544		50.315	21.42	1	144000		+	25852	189;197	14873	15300	20609	20609					-0.01386874864465426
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5364311291	1	1094.53643	1093.52915	3.3912	0.0037118	-0.68466	-0.00074939	2.7065	0.0029624	1094.535340789455	26.07	0.41025	26.059	25.987	26.397	-0.011137	132	409	1.5405227	0.24187386	1.5390033	312.41092	0	49.050903						2336	18	5	NaN	NaN	NaN	0.013678	1	12223	12223		66.544	10.952	1	2916100		+	25853	189;197	14873	15300	20610	20610					-0.01386874864465426
TAAENEFVTL	10	Unmodified	_TAAENEFVTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P50446;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000186442|ENST00000417996|KRT3	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7718537978501	2	547.771854	1093.52915	2.2453	0.0012299	1.4416	0.00078964	3.6869	0.0020196	547.7731626481477	26.07	0.3137	26.059	26.011	26.324	-0.011137	1269	127	0.8560222	0.077317536	0.85450274	347.19073	0	31.358917						549	14	2	NaN	NaN	NaN	0.10101	1	12224	12224		45.827	7.6957	1	160130		+	25854	189;197	14873	15300	20611	20611					-0.01386874864465426
TAAGAALL	8	Unmodified	_TAAGAALL_					0	0	0			REV__TACR3|p.S27L|1|0.21|ENSG00000169836|chr4:103719596-103719596|G/A|missense_variant	REV__TACR3|p.S27L|1|0.21|ENSG00000169836|chr4:103719596-103719596|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.4035664626	1	687.403566	686.39629	2.1159	0.0014545	6.6933	0.004601	8.8092	0.0060555	687.4083039553748	30.149	0.14479	30.149	30.101	30.246	0	645	97	1.2351195	0.057717323	1.2351195	252.32079	0	11.790985						162	7	2	NaN	NaN	NaN	0.76633	1	2960	2960		13.737	0	1	17308	+		25855	13365	14874	15301	20612	20612					0.04054770260177065
TAAGDKES	8	Unmodified	_TAAGDKES_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.6825074743	2	389.682507	777.350462	1.9959	0.00077777	5.8719	0.0022882	7.8678	0.0030659	389.6854623819646	29.038	0.048256	29.031	28.982	29.031	-0.0077229	1611	25	0.64460784	0.0149281025	0.6430884	262.76288	0	6.0851746						40	3	2	NaN	NaN	NaN	0.84756	1	4377	4377		1.072	0.14616	1	2773.5	+		25856	10837	14875	15302	20613	20613					-0.04711919712701729
TAAGEAEAL	9	Unmodified	_TAAGEAEAL_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.4046886745999	1	832.404689	831.397412	1.9959	0.0016614	-2.013	-0.0016756	-0.017037	-1.4182E-05	832.4031177423377	17.165	0.16801	17.165	17.117	17.285	0	531	46	1.3034686	0.026923656	1.3034686	265.37405	0	5.481415						159	8	2	NaN	NaN	NaN	0.032764	1	5150	5150		55.494	8.0121	1	16321			25857	5875	14876	15303	20614	20614					-0.025030601615753767
TAAGEAEAL	9	Unmodified	_TAAGEAEAL_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	832.4046886745999	1	832.404689	831.397412	1.585	0.0013194	-0.51253	-0.00042664	1.0725	0.00089275	832.4042814565287	17.162	0.16789	17.149	17.1	17.268	-0.013569	528	49	1.3052634	0.02871406	1.303744	265.73947	0	5.8459167						184	8	2	NaN	NaN	NaN	0.032764	1	5033	5033		55.494	8.3578	1	19309			25858	5875	14876	15303	20615	20615					-0.025030601615753767
TAAGQGILSR	10	Unmodified	_TAAGQGILSR_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001-14|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.2748980133	2	487.274898	972.535243	1.7671	0.00086107	-2.0438	-0.00099588	-0.27666	-0.00013481	487.27316071979936	15.366	0.12018	15.366	15.342	15.462	0	1320	37	0.824661	0.022157669	0.824661	334.98834	0	9.000763						86	6	2	NaN	NaN	NaN	0.61382	1	7684	7684		13.949	3.3438	1	6481.5			25859	3759	14877	15304	20616	20616					0.04787688157705361
TAAGQGILSR	10	Unmodified	_TAAGQGILSR_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001-14|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.2748980133	2	487.274898	972.535243	1.7619	0.00085852	-2.8571	-0.0013922	-1.0952	-0.00053366	487.2734592829747	15.364	0.14383	15.352	15.328	15.472	-0.012201	1320	40	0.824661	0.024005413	0.8231416	334.98834	0	9.751343						95	7	2	NaN	NaN	NaN	0.57785	1	7533	7533		16.226	0.76316	1	7510.1			25860	3759	14877	15304	20617	20617					0.04787688157705361
TAALSYVL	8	Unmodified	_TAALSYVL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4716460277999	1	837.471646	836.46437	0.99745	0.00083534	0.092122	7.715E-05	1.0896	0.00091249	837.4714138937285	27.422	0.16893	27.411	27.363	27.532	-0.010126	411	91	1.3751161	0.053649783	1.3735967	279.93323	0	10.921509						377	8	4	NaN	NaN	NaN	0.30832	1	5098	5098		41.46	0	1	76737			25861	4110	14878	15305	20618	20618					0.03959595120170434
TAAMIDAVL	9	Unmodified	_TAAMIDAVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4808305056	1	904.480831	903.473554	2.1781	0.0019701	-1.2241	-0.0011071	0.95407	0.00086294	904.4805790253198	28.508	0.28964	28.508	28.46	28.75	0	366	169	1.4019053	0.10000789	1.4019053	285.04437	0	20.334259						770	13	5	NaN	NaN	NaN	0.032764	1	6148	6148		55.494	14.034	1	198770			25862	1811	14879	15306	20619	20619					0.017956204142024035
TAAMIDAVL	9	Unmodified	_TAAMIDAVL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4808305056	1	904.480831	903.473554	1.9536	0.001767	-1.2853	-0.0011625	0.66826	0.00060443	904.4802788057963	28.532	0.24126	28.523	28.475	28.716	-0.0083485	363	160	1.4036897	0.09463525	1.4021703	285.4072	0	19.241852						693	11	4	NaN	NaN	NaN	0.03623	1	6023	6023		52.758	8.4559	1	202890			25863	1811	14879	15306	20620	20620					0.017956204142024035
TAAMIDAVL	9	Oxidation (M)	_TAAM(Oxidation (M))IDAVL_		TAAM(1)IDAVL		TAAM(50)IDAVL	0	0	1		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4757451277001	1	920.475745	919.468469	1.7277	0.0015903	-1.1266	-0.0010371	0.60107	0.00055327	920.4752231628917	24.888	0.072378	24.888	24.84	24.912	0	375	88	1.3965509	0.05175948	1.3965509	283.88153	0	10.521301						235	4	4	NaN	NaN	NaN	0.043119	1	6406	6406		49.833	13.797	1	61768			25864	1811	14879	15307	20621	20621		204			0.005513165515935725
TAAMIDAVL	9	Oxidation (M)	_TAAM(Oxidation (M))IDAVL_		TAAM(1)IDAVL		TAAM(42)IDAVL	0	0	1		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4757451277001	1	920.475745	919.468469	1.3372	0.0012309	-0.52029	-0.00047891	0.81691	0.00075195	920.4757673583867	24.888	0.072361	24.875	24.827	24.9	-0.012394	375	106	1.3965509	0.062481523	1.3950315	283.88153	0	12.700836						278	4	4	NaN	NaN	NaN	0.062072	1	6274	6274		41.785	8.0862	1	67795			25865	1811	14879	15307	20622	20622		204			0.005513165515935725
TAAMIDAVL	9	Oxidation (M)	_TAAM(Oxidation (M))IDAVL_		TAAM(1)IDAVL		TAAM(44)IDAVL	0	0	1		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4757451277001	1	920.475745	919.468469	1.4291	0.0013155	0.68949	0.00063466	2.1186	0.0019501	920.4764531250142	24.96	0.14475	24.948	24.948	25.093	-0.012394	354	79	1.4090419	0.046382785	1.4075224	286.42062	0	9.428406						211	7	2	NaN	NaN	NaN	0.056143	1	6275	6275		44.302	7.7159	1	61877			25866	1811	14879	15307	20623	20623		204			0.005513165515935725
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-4|BRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4777940381999	1	865.477794	864.470518	1.8121	0.0015683	-1.2126	-0.0010495	0.59951	0.00051886	865.4763823025147	18.53	0.31198	18.516	18.396	18.708	-0.01395	453	67	1.3500742	0.039393544	1.3485547	274.69147	0	8.015167						328	14	3	NaN	NaN	NaN	0.036546	1	5452	5452		52.624	12.47	1	40948			25867	5869	14880	15308	20624	20624					0.03286113351691711
TAAPSAPAL	9	Unmodified	_TAAPSAPAL_					0	0	0		ENST00000562701.5_1_16:28997691-29001330:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.4355948725	1	798.435595	797.428318	2.0381	0.0016273	-0.10137	-8.094E-05	1.9367	0.0015463	798.4359706444382	19.972	0.12023	19.972	19.924	20.045	0	546	52	1.294491	0.030533075	1.294491	263.7288	0	6.2205505						153	6	2	NaN	NaN	NaN	0.043119	1	4724	4724		49.833	0	1	19800			25868	5965	14881	15309	20625	20625					0.021501379433289003
TAAPSAPAL	9	Unmodified	_TAAPSAPAL_					0	0	0		ENST00000562701.5_1_16:28997691-29001330:+|nuORF;nc|ENSG00000213658|O43561-4|LAT;ENSG00000213658|ENST00000395456|LAT;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT;nc|ENSG00000213658|O43561-3|LAT	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4355948725	1	798.435595	797.428318	1.6996	0.0013571	-0.40158	-0.00032063	1.2981	0.0010364	798.4348091816626	19.972	0.12046	19.958	19.909	20.03	-0.014141	546	52	1.294491	0.030529857	1.2929716	263.7288	0	6.2199097						158	6	3	NaN	NaN	NaN	0.03623	1	4635	4635		52.758	13.84	1	17084			25869	5965	14881	15309	20626	20626					0.021501379433289003
TAAPVQETL	9	Unmodified	_TAAPVQETL_					0	0	0		ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.4938380329	1	929.493838	928.486562	2.1766	0.0020231	0.30694	0.0002853	2.4835	0.0023084	929.4946101403708	19.852	0.096172	19.852	19.828	19.924	0	330	49	1.4233059	0.028515935	1.4233059	289.27866	0	5.795685						85	5	2	NaN	NaN	NaN	0.030545	1	6560	6560		58.398	28.799	1	7282.3			25870	1295	14882	15310	20627	20627					0.01945774797957256
TAAPVQETL	9	Unmodified	_TAAPVQETL_					0	0	0		ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4938380329	1	929.493838	928.486562	1.4494	0.0013472	0.29539	0.00027457	1.7448	0.0016218	929.4935433540064	19.851	0.096167	19.837	19.813	19.909	-0.014141	327	49	1.425088	0.028515935	1.4235686	289.64087	0	5.795685						87	5	2	NaN	NaN	NaN	0.064504	1	6431	6431		40.957	17.839	1	7185.1			25871	1295	14882	15310	20628	20628					0.01945774797957256
TAAPVVPEL	9	Unmodified	_TAAPVVPEL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	896.5087598156	1	896.50876	895.501483	2.2529	0.0020197	-0.72242	-0.00064766	1.5304	0.0013721	896.5077702314203	25.949	0.072386	25.938	25.914	25.986	-0.0116	414	73	1.3733286	0.042878747	1.3718091	279.27127	0	8.719543						106	4	2	NaN	NaN	NaN	0.31737	1	5881	5881		17.799	5.7503	1	8524.8			25872	2865	14883	15311	20629	20629					0.04955266665945146
TAASPTIAL	9	Unmodified	_TAASPTIAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4774596871999	1	844.47746	843.470183	1.869	0.0015783	-0.30113	-0.0002543	1.5678	0.001324	844.4772946064485	23.586	0.14451	23.586	23.538	23.682	0	435	85	1.360811	0.050115943	1.360811	276.98395	0	10.200745						252	7	3	NaN	NaN	NaN	0.043119	1	5315	5315		49.833	22.044	1	34850			25873	5207	14884	15312	20630	20630					0.04218693631844417
TAASPTIAL	9	Unmodified	_TAASPTIAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4774596871999	1	844.47746	843.470183	1.4523	0.0012265	0.20853	0.0001761	1.6609	0.0014026	844.4775120781018	23.585	0.12054	23.572	23.548	23.669	-0.013048	432	91	1.3625998	0.05369556	1.3610804	277.34805	0	10.929382						244	6	3	NaN	NaN	NaN	0.021105	1	5182	5182		70.6	28.815	1	34490			25874	5207	14884	15312	20631	20631					0.04218693631844417
TAASQEHGL	9	Unmodified	_TAASQEHGL_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.22233112655005	2	457.222331	912.430109	0.80093	0.0003662	-1.688	-0.0007718	-0.8871	-0.0004056	457.22160600552945	12.34	0.095964	12.34	12.268	12.364	0	1398	34	0.77658504	0.020367384	0.77658504	315.74878	0	8.281097						70	5	2	NaN	NaN	NaN	0.10363	1	6272	6272		35.296	13.525	1	6135.8			25875	6079	14885	15313	20632	20632					-0.029608530387008614
TAASQEHGL	9	Unmodified	_TAASQEHGL_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.22233112655005	2	457.222331	912.430109	1.4411	0.00065891	-3.7235	-0.0017025	-2.2823	-0.0010435	457.2207902736809	12.318	0.072007	12.309	12.237	12.309	-0.0088415	1398	28	0.77658504	0.016666055	0.7750656	315.7488	0	6.776184						48	4	2	NaN	NaN	NaN	0.44082	1	6151	6151		12.049	4.5083	1	4021.4			25876	6079	14885	15313	20633	20633					-0.029608530387008614
TADAGYAIL	9	Unmodified	_TADAGYAIL_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4567242451	1	894.456724	893.449448	1.8583	0.0016621	-1.0756	-0.00096205	0.78269	0.00070008	894.454774793358	25.178	0.07238	25.178	25.153	25.226	0	366	73	1.4019053	0.04284215	1.4019053	285.09235	0	8.712433						117	4	2	NaN	NaN	NaN	0.20577	1	5972	5972		24.961	0	1	12443			25877	5284	14886	15314	20634	20634					-0.0015389674781545182
TADAGYAIL	9	Unmodified	_TADAGYAIL_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4567242451	1	894.456724	893.449448	1.7032	0.0015235	-2.0476	-0.0018315	-0.34436	-0.00030802	894.4542704209282	25.177	0.072412	25.165	25.141	25.214	-0.012011	363	70	1.4036897	0.041054845	1.4021703	285.45523	0	8.3489685						111	4	2	NaN	NaN	NaN	0.10956	1	5858	5858		34.439	9.4778	1	11356			25878	5284	14886	15314	20635	20635					-0.0015389674781545182
TADDLIDVV	9	Unmodified	_TADDLIDVV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000438989.1_1_2:20440064-20440208:-|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.488418304	1	960.488418	959.481142	1.6755	0.0016093	-0.83005	-0.00079725	0.84549	0.00081209	960.4872882557537	28.339	0.096504	28.339	28.291	28.388	0	270	82	1.458913	0.04803121	1.458913	296.37558	0	9.757477						276	5	3	NaN	NaN	NaN	0.03623	1	7320	7320		52.758	16.172	1	62589			25879	5430	14887	15315	20636	20636					-0.00021948784524283838
TADDLIDVV	9	Unmodified	_TADDLIDVV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000438989.1_1_2:20440064-20440208:-|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.488418304	1	960.488418	959.481142	1.3333	0.0012806	1.1071	0.0010633	2.4403	0.0023439	960.489709781011	28.339	0.24129	28.33	28.281	28.523	-0.0089779	267	79	1.4606913	0.046249866	1.4591719	296.73685	0	9.395569						383	11	4	NaN	NaN	NaN	0.12945	1	7175	7175		31.561	1.9627	1	70776			25880	5430	14887	15315	20637	20637					-0.00021948784524283838
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.4414681114	1	918.441468	917.434192	2.0079	0.0018442	2.281	0.0020949	4.2889	0.0039391	918.4440582304487	23.248	0.14472	23.248	23.2	23.345	0	351	85	1.4108255	0.049966574	1.4108255	286.79257	0	10.157227						206	7	3	NaN	NaN	NaN	0.032764	1	6365	6365		55.494	18.907	1	21384			25881	6089	14888	15316	20638	20638					-0.027828083356666866
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.4414681114	1	918.441468	917.434192	1.7288	0.0015878	3.3731	0.003098	5.1019	0.0046858	918.4446206896117	23.248	0.16888	23.234	23.186	23.355	-0.013294	348	76	1.412609	0.04460597	1.4110895	287.1551	0	9.067505						180	8	3	NaN	NaN	NaN	0.043119	1	6231	6231		49.833	8.0484	1	19633			25882	6089	14888	15316	20639	20639					-0.027828083356666866
TADFREQIL	9	Unmodified	_TADFREQIL_					0	0	0		ENST00000546724.1_1_12:79187410-79187629:-|nuORF;ENSG00000006451|ENST00000005257|RALA	ENST00000546724.1_1_12:79187410-79187629:-|nuORF	ENST00000546724.1_1_12:79187410-79187629:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7878382130501	2	546.787838	1091.56112	1.6191	0.00088532	-2.7709	-0.0015151	-1.1518	-0.00062976	546.7865748323883	22.019	0.14468	22.019	21.994	22.139	0	1275	40	0.85233563	0.02396655	0.85233563	345.70328	0	9.720703						111	7	2	NaN	NaN	NaN	0.44834	1	12472	12472		11.739	0	1	38846			25883	345	14889	15317	20640	20640					0.019005376093446102
TADFREQIL	9	Unmodified						0	0	0		ENST00000546724.1_1_12:79187410-79187629:-|nuORF;ENSG00000006451|ENST00000005257|RALA	ENST00000546724.1_1_12:79187410-79187629:-|nuORF	ENST00000546724.1_1_12:79187410-79187629:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	546.787838	1091.56112	1.235	0.0006753	-3.6562	-0.0019991	-2.4211	-0.0013238	546.7860145655824	22.018	0.16858	22.004	21.956	22.125	-0.013895	1275	46	0.85233563	0.027650714	0.8508162	345.70328		11.214996	-0.0070688	-0.00062107	-0.00075972	NaN	11.739	104	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37134			25884	345	14889	15317							0.019005376093446102
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.72470663999997	2	480.724707	959.43486	1.6605	0.00079825	-2.0371	-0.0009793	-0.37663	-0.00018105	480.72371541909126	20.213	0.1923	20.213	20.189	20.381	0	1338	58	0.81357855	0.03511536	0.81357855	330.5494	0	14.267029						235	9	4	NaN	NaN	NaN	0.10956	1	7307	7307		34.439	16.658	1	41075			25885	979	14890	15318	20641	20641					-0.0464796889596073
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.72470663999997	2	480.724707	959.43486	1.8782	0.00090288	-1.5978	-0.00076809	0.28039	0.00013479	480.7238916176088	20.237	0.16845	20.222	20.15	20.319	-0.014143	1338	55	0.81357855	0.033265352	0.8120591	330.5494	0	13.515411						227	8	3	NaN	NaN	NaN	0.14301	1	7166	7166		29.598	10.48	1	43353			25886	979	14890	15318	20642	20642					-0.0464796889596073
TADKLYFVL	9	Unmodified	_TADKLYFVL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.3000501313	2	535.30005	1068.58555	2.0028	0.0010721	-1.7159	-0.0009185	0.28695	0.00015361	535.2990984839619	27.712	0.16889	27.712	27.664	27.833	0	1239	73	0.87444305	0.04420048	0.87444305	354.76498	0	17.932312						302	8	4	NaN	NaN	NaN	0.33513	1	11505	11505		23.086	8.0729	1	86542			25887	2181	14891	15319	20643	20643					0.05399797762856906
TADKLYFVL	9	Unmodified	_TADKLYFVL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF;ENST00000474427.6_1_6:134494022-134494280:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.3000501313	2	535.30005	1068.58555	0.89482	0.000479	-0.77786	-0.00041639	0.11696	6.2609E-05	535.2999938692963	27.735	0.24135	27.726	27.677	27.919	-0.009552	1236	76	0.876284	0.046044707	0.8747646	355.51187	0	18.680511						360	11	3	NaN	NaN	NaN	0.26848	1	11224	11224		28.495	12.079	1	93153			25888	2181	14891	15319	20644	20644					0.05399797762856906
TADLFLTTL	9	Unmodified	_TADLFLTTL_					0	0	0		ENST00000569551.6_1_16:47399687-47486648:-|nuORF;ENSG00000129636|ENST00000320640|ITFG1	ENST00000569551.6_1_16:47399687-47486648:-|nuORF	ENST00000569551.6_1_16:47399687-47486648:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.5455392523999	1	994.545539	993.538263	1.3419	0.0013346	-1.2817	-0.0012747	0.060166	5.9838E-05	994.5445458205896	30.052	0.12068	30.045	30.021	30.142	-0.0064106	240	85	1.4766881	0.04971242	1.4751687	299.84097	0	10.094086						114	6	2	NaN	NaN	NaN	0.16171	1	8184	8184		27.789	2.8278	1	11588			25889	2609	14892	15320	20645	20645					0.041235184918377854
TADLSAETL	9	Unmodified	_TADLSAETL_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense;L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|145|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense;nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4571181755999	1	920.457118	919.449842	2.0345	0.0018726	-0.38208	-0.00035169	1.6524	0.0015209	920.4567228393746	21.778	0.24091	21.778	21.73	21.97	0	345	91	1.4143922	0.05351293	1.4143922	287.5083	0	10.877777						454	11	4	NaN	NaN	NaN	0.014046	1	6400	6400		80.639	6.3067	1	116290			25890	7853;7851	14893	15321	20646	20646					-0.013105218186183265
TADLSAETL	9	Unmodified	_TADLSAETL_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense;L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|145|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|67|2|sense;nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4571181755999	1	920.457118	919.449842	1.4709	0.0013539	-0.18743	-0.00017252	1.2835	0.0011814	920.4564849455359	21.778	0.21668	21.764	21.691	21.908	-0.013895	342	91	1.4161754	0.05350721	1.4146559	287.87076	0	10.876587						423	10	4	NaN	NaN	NaN	0.0094682	1	6269	6269		93.472	22.872	1	110700			25891	7853;7851	14893	15321	20647	20647					-0.013105218186183265
TADPLDYRL	9	Unmodified	_TADPLDYRL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2745636623	2	532.274564	1062.53457	2.5844	0.0013756	-2.2452	-0.0011951	0.33912	0.00018051	532.2738069463421	23.152	0.19288	23.152	23.079	23.272	0	1272	82	0.854179	0.049765885	0.854179	346.56888	0	20.191711						468	9	4	NaN	NaN	NaN	0.026469	1	11229	11229		63.731	35.942	1	247870			25892	1772	14894	15322	20648	20648					0.0058084871798200766
TADPLDYRL	9	Unmodified	_TADPLDYRL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2745636623	2	532.274564	1062.53457	1.6003	0.00085182	-1.3567	-0.00072213	0.24366	0.00012969	532.2741458876311	23.175	0.21709	23.162	23.09	23.307	-0.013294	1272	76	0.854179	0.046079576	0.8526596	346.56888	0	18.696014						501	10	4	NaN	NaN	NaN	0.00065562	1	10979	10979		115.07	67.934	1	259450			25893	1772	14894	15322	20649	20649					0.0058084871798200766
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.21364881470004	2	494.213649	986.412745	1.3257	0.00065518	-0.4975	-0.00024587	0.8282	0.00040931	494.2134111747439	12.436	0.21588	12.436	12.34	12.556	0	1359	46	0.8006399	0.027734637	0.8006399	325.16687	0	11.263947						201	10	2	NaN	NaN	NaN	0.041983	1	8087	8087		50.315	26.981	1	33232			25894	5602	14895	15323	20650	20650					-0.08100516636011434
TADPSHQTM	9	Unmodified	_TADPSHQTM_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.21364881470004	2	494.213649	986.412745	0.69485	0.0003434	0.37063	0.00018317	1.0655	0.00052657	494.21382807144045	12.414	0.21605	12.405	12.333	12.549	-0.0088415	1362	43	0.79879075	0.025887072	0.7972713	324.41583	0	10.513611						177	10	2	NaN	NaN	NaN	0.37272	1	7917	7917		14.854	0.8124	1	27010			25895	5602	14895	15323	20651	20651					-0.08100516636011434
TADPYERVDL	10	Unmodified	_TADPYERVDL_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7880351783001	2	589.788035	1177.56152	1.4487	0.00085443	-1.567	-0.0009242	-0.11831	-6.9778E-05	590.2892265885886	20.285	0.14425	20.285	20.261	20.405	0	1218	46	0.8873258	0.02759105	0.8873258	359.5673	0	11.180603						99	7	2	NaN	NaN	NaN	0.5544	1	15743	15743		17.198	4.6287	1	13440			25896	5203	14896	15324	20652	20652					-0.02016087461470306
TADPYERVDL	10	Unmodified	_TADPYERVDL_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7880351783001	2	589.788035	1177.56152	1.1806	0.0006963	0.27809	0.00016402	1.4587	0.00086032	589.786253384726	20.309	0.096273	20.295	20.271	20.367	-0.014141	1218	52	0.8873258	0.031273186	0.8858064	359.5673	0	12.672668						167	5	4	NaN	NaN	NaN	0.47025	1	15171	15171		20.688	9.5173	1	24137			25897	5203	14896	15324	20653	20653					-0.02016087461470306
TADSGYYVL	9	Unmodified	_TADSGYYVL_					0	0	0		nc|ENSG00000179403|Q6PCB0-2|VWA1;ENSG00000179403|ENST00000476993|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.4622035535	1	988.462204	987.454927	1.6524	0.0016333	-0.20601	-0.00020363	1.4463	0.0014297	988.461699507891	24.912	0.12064	24.9	24.851	24.972	-0.012392	222	61	1.4873441	0.035512567	1.4858247	302.03015	0	7.2114563						185	6	3	NaN	NaN	NaN	0.10956	1	7953	7953		34.439	12.312	1	24952			25898	5152	14897	15325	20654	20654					-0.039302179559967954
TADSGYYVL	9	Unmodified						0	0	0		nc|ENSG00000179403|Q6PCB0-2|VWA1;ENSG00000179403|ENST00000476993|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	988.462204	987.454927	2.0298	0.0020064	-0.30559	-0.00030206	1.7242	0.0017044	988.4619516858629	24.912	0.16894	24.912	24.864	25.033	0	222	58	1.4873441	0.03373158	1.4873441	302.03015		6.8497925	0.0062901	-6.7509E-05	0.00075972	NaN	34.439	205	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29285			25899	5152	14897	15325							-0.039302179559967954
TADSTTAAVL	10	Unmodified	_TADSTTAAVL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.4836672770999	1	949.483667	948.476391	1.5797	0.0014999	-1.3514	-0.0012831	0.22836	0.00021683	949.4828785356531	20.213	0.12036	20.198	20.174	20.295	-0.014141	321	49	1.4286518	0.028506875	1.4271324	290.27576	0	5.7920837						121	6	2	NaN	NaN	NaN	0.2358	1	6916	6916		32.453	10.618	1	11577			25900	2542	14898	15326	20655	20655					9.167072710170032E-05
TADVTSAVM	9	Unmodified	_TADVTSAVM_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4237095572	1	894.42371	893.416433	1.5511	0.0013874	0.24258	0.00021697	1.7937	0.0016043	894.4242687343917	20.453	0.1442	20.453	20.405	20.549	0	405	64	1.3786905	0.037532926	1.3786905	280.3715	0	7.6326904						211	7	3	NaN	NaN	NaN	0.10956	1	5968	5968		34.439	9.4778	1	26123			25901	2986	14899	15327	20656	20656					-0.0345384686216903
TADVTSAVM	9	Unmodified	_TADVTSAVM_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4237095572	1	894.42371	893.416433	1.2851	0.0011495	0.8148	0.00072877	2.0999	0.0018782	894.4247083048198	20.453	0.16849	20.439	20.391	20.559	-0.014143	405	55	1.3786905	0.032162428	1.377171	280.3715	0	6.540558						202	8	3	NaN	NaN	NaN	0.043119	1	5853	5853		49.833	20.235	1	23966			25902	2986	14899	15327	20657	20657					-0.0345384686216903
TADVTSAVM	9	Oxidation (M)	_TADVTSAVM(Oxidation (M))_		TADVTSAVM(1)		TADVTSAVM(71)	0	0	1		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.4186241793001	1	910.418624	909.411348	2.0675	0.0018823	-1.2874	-0.0011721	0.7801	0.00071021	910.4176315894773	16.542	0.19188	16.542	16.494	16.686	0	417	64	1.3715409	0.0375489	1.3715409	278.84317	0	7.6339417						261	9	3	NaN	NaN	NaN	0.021105	1	6217	6217		70.6	26.297	1	34433			25903	2986	14899	15328	20658	20658		341			-0.04698150724777861
TADVTSAVM	9	Oxidation (M)	_TADVTSAVM(Oxidation (M))_		TADVTSAVM(1)		TADVTSAVM(81)	0	0	1		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.4186241793001	1	910.418624	909.411348	2.1701	0.0019757	-0.50536	-0.00046009	1.6647	0.0015156	910.4182308592926	16.539	0.1678	16.526	16.478	16.645	-0.012995	414	58	1.3733286	0.033961892	1.3718091	279.2066	0	6.904663						231	8	4	NaN	NaN	NaN	0.014046	1	6101	6101		80.639	33.598	1	33486			25904	2986	14899	15328	20659	20659		341			-0.04698150724777861
TADWGGAE	8	Unmodified	_TADWGGAE_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	806.3315237315	1	806.331524	805.324247	1.9924	0.0016065	-10.278	-0.0082877	-8.2859	-0.0066812	806.3227483100554	20.333	0.048096	20.319	20.295	20.343	-0.014141	558	52	1.2873057	0.030552626	1.2857863	262.2214	0	6.2235413						61	3	2	NaN	NaN	NaN	0.78264	1	4717	4717		11.548	3.2582	1	5454	+		25905	11164	14900	15329	20660	20660					-0.08620188884185609
TAEAFQIVL	9	Unmodified	_TAEAFQIVL_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.276575035	2	496.276575	990.538597	1.0695	0.00053078	-2.755	-0.0013673	-1.6855	-0.00083647	496.2753377166832	30.946	0.16894	30.946	30.897	31.066	0	1308	64	0.83204526	0.038740337	0.83204526	337.90228	0	15.732849						226	8	4	NaN	NaN	NaN	0.055351	1	8240	8240		44.638	10.2	1	40721			25906	4685	14901	15330	20661	20661					0.04294938211717181
TAEAFQIVL	9	Unmodified	_TAEAFQIVL_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.276575035	2	496.276575	990.538597	0.83017	0.00041199	-0.67294	-0.00033396	0.15723	7.8029E-05	496.2764617499407	30.945	0.19309	30.94	30.891	31.084	-0.0050716	1305	46	0.83389086	0.027683675	0.8323714	338.6518	0	11.242615						232	9	4	NaN	NaN	NaN	0.062072	1	8071	8071		41.785	8.3592	1	41837			25907	4685	14901	15330	20662	20662					0.04294938211717181
TAEAFQIVL	9	Unmodified	_TAEAFQIVL_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5458736034001	1	991.545874	990.538597	1.4353	0.0014231	-0.779	-0.00077241	0.65627	0.00065072	991.545492361293	30.945	0.096529	30.94	30.891	30.988	-0.0050716	216	88	1.4908947	0.051479697	1.4893752	302.73816	0	10.453369						199	5	2	NaN	NaN	NaN	0.10363	1	8072	8072		35.296	5.6982	1	41424			25908	4685	14901	15330	20663	20663					0.04294938211717181
TAEAFQIVL	9	Unmodified						0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1;ENST00000569969.5_2_16:28993554-28995617:+|nuORF	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	991.545874	990.538597	1.4777	0.0014652	0.50783	0.00050353	1.9855	0.0019687	991.5470272046316	30.946	0.12067	30.946	30.897	31.018	0	219	91	1.4891195	0.05327463	1.4891195	302.3777		10.817841	0.0030506	0.00076009	-0.00012786	NaN	35.296	267	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42746			25909	4685	14901	15330							0.04294938211717181
TAEALQPTL	9	Unmodified	_TAEALQPTL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.5094880971	1	943.509488	942.502212	1.6875	0.0015922	-1.9529	-0.0018426	-0.26541	-0.00025042	943.5072623062998	22.477	0.19267	22.477	22.38	22.573	0	288	82	1.4482387	0.048077226	1.4482387	294.28217	0	9.769287						315	9	3	NaN	NaN	NaN	0.015029	1	6879	6879		78.289	5.8611	1	34718			25910	4842	14902	15331	20664	20664					0.028660613149895653
TAEALQPTL	9	Unmodified	_TAEALQPTL_					0	0	0		nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP;ENST00000466847.5_1_16:88068919-88110264:+|nuORF;ENST00000481948.1_1_16:88104968-88110264:+|nuORF;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	nc|ENSG00000172530|Q8N9N5-6|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971	1	943.509488	942.502212	1.4848	0.001401	-0.42985	-0.00040557	1.055	0.00099539	943.5086784353357	22.5	0.12057	22.486	22.438	22.559	-0.013731	288	79	1.4482387	0.046294093	1.4467193	294.28217	0	9.406952						255	6	3	NaN	NaN	NaN	0.024359	1	6748	6748		66.481	5.4996	1	31610			25911	4842	14902	15331	20665	20665					0.028660613149895653
TAEEVVTVAL	10	Unmodified	_TAEEVVTVAL_					0	0	0		nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	nc|ENSG00000104691|O00124-2|UBXN8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5619175981	1	1031.56192	1030.55464	1.7905	0.0018471	-0.83035	-0.00085656	0.96019	0.0009905	1031.5597407249156	26.577	0.072424	26.577	26.553	26.625	0	192	46	1.5050892	0.026604772	1.5050892	305.45755	0	5.3994446						76	4	2	NaN	NaN	NaN	0.56921	1	9811	9811		16.584	6.8382	1	5337.9			25912	1486	14903	15332	20666	20666					0.04058599657969353
TAEFEDFVL	9	Unmodified	_TAEFEDFVL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5040683682	1	1070.50407	1069.49679	1.3088	0.0014011	0.40006	0.00042826	1.7089	0.0018294	1070.5048754573993	31.79	0.16893	31.79	31.67	31.839	0	150	85	1.5299006	0.049564958	1.5299006	310.3437	0	10.054352						340	8	4	NaN	NaN	NaN	0.030391	1	11533	11533		58.599	14.297	1	47453			25913	738	14904	15333	20667	20667					-0.03517662267472588
TAEILDFAL	9	Unmodified	_TAEILDFAL_					0	0	0		ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5298891882	1	992.529889	991.522613	1.2195	0.0012104	6.2763	0.0062294	7.4958	0.0074398	992.5383014229791	33.817	0.096519	33.817	33.793	33.89	0	219	61	1.4891195	0.035505056	1.4891195	302.37357	0	7.2094727						139	5	3	NaN	NaN	NaN	0.23112	1	8279	8279		23.334	2.779	1	13763			25914	2545	14905	15334	20668	20668					0.02651231974800794
TAEILDFAL	9	Unmodified						0	0	0		ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.529889	991.522613	1.0823	0.0010742	4.0212	0.0039911	5.1034	0.0050653	992.5338539438155	33.816	0.072445	33.814	33.766	33.839	-0.0018463	213	58	1.4926696	0.033724427	1.4911501	303.09445		6.847931	-0.0015304	-0.0011195	0.0010153	NaN	23.334	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11110			25915	2545	14905	15334							0.02651231974800794
TAELDPHIL	9	Unmodified	_TAELDPHIL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.77165683260006	2	504.771657	1007.52876	2.0125	0.0010158	-1.8069	-0.00091205	0.20564	0.0001038	504.7709571015697	23.055	0.096205	23.055	23.007	23.103	0	1197	40	0.9001988	0.023899257	0.9001988	365.4957	0	9.703491						111	5	3	NaN	NaN	NaN	0.14301	1	8885	8885		29.598	19.238	1	16863			25916	3058	14906	15335	20669	20669					0.025297502063381216
TAELDPHIL	9	Unmodified						0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	504.771657	1007.52876	1.4317	0.00072267	-0.3666	-0.00018505	1.0651	0.00053762	504.7719516757981	23.079	0.072191	23.065	23.041	23.114	-0.013294	1197	40	0.9001988	0.023899257	0.8986794	365.4957		9.703522	0.0051112	0.00057479	-0.00075972	NaN	29.598	111	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16801			25917	3058	14906	15335							0.025297502063381216
TAEMYDNIL	9	Unmodified	_TAEMYDNIL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.4870380954999	1	1069.48704	1068.47976	1.8181	0.0019444	0.069129	7.3933E-05	1.8872	0.0020183	1069.4863626293875	26.625	0.12069	26.625	26.577	26.698	0	132	55	1.5405227	0.031863213	1.5405227	312.5022	0	6.463623						175	6	3	NaN	NaN	NaN	0.2961	1	11475	11475		19.164	3.7009	1	14156			25918	2181	14907	15336	20670	20670					-0.05173906144932516
TAEMYDNIL	9	Unmodified						0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1069.48704	1068.47976	0.96934	0.0010367	-0.75725	-0.00080987	0.21209	0.00022682	1069.4864959369258	26.625	0.14477	26.614	26.566	26.711	-0.010643	132	61	1.5405227	0.035407305	1.5390033	312.5022		7.182556	-0.0054942	-0.00034178	-0.00075972	NaN	19.164	157	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13396			25919	2181	14907	15336							-0.05173906144932516
TAENEFVML	9	Unmodified	_TAENEFVML_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.4921234734	1	1053.49212	1052.48485	1.4068	0.001482	0.96844	0.0010202	2.3752	0.0025023	1053.4935331269505	28.845	0.072382	28.837	28.813	28.885	-0.0083504	150	85	1.5299006	0.049564958	1.5283811	310.40756	0	10.056427						146	4	2	NaN	NaN	NaN	0.27507	1	10502	10502		20.513	7.5105	1	11681		+	25920	219	14908	15337	20671	20671					-0.03929602282300948
TAENLPRNVTN	11	Unmodified	_TAENLPRNVTN_					0	0	0			REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.8176582850001	2	614.817658	1227.62076	1.4377	0.0008839	-1.9586	-0.0012042	-0.5209	-0.00032026	614.817010704901	15.676	0.14384	15.663	15.639	15.783	-0.012611	1203	70	0.8965218	0.042274177	0.89500237	363.12216	0	17.122498						128	7	3	NaN	NaN	NaN	0.65577	1	16496	16496		10.36	1.4411	1	10865	+		25921	12848	14909	15338	20672	20672					0.0160580855272201
TAENLPRNVTN	11	Unmodified						0	0	0			REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.817658	1227.62076	1.4377	0.0008839	-1.9586	-0.0012042	-0.5209	-0.00032026	614.817010704901	15.676	0.14384	15.663	15.639	15.783	-0.012611	1203	70	0.8965218	0.042274177	0.89500237	363.12216		17.122498	-0.0073993	-0.0009383	0.00015968	NaN	10.36	128	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10865	+		25922	12848	14909	15338							0.0160580855272201
TAESESFVL	9	Unmodified	_TAESESFVL_					0	0	0		ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4727682398001	1	982.472768	981.465492	2.243	0.0022037	-0.89713	-0.00088141	1.3459	0.0013223	982.4718127205613	25.588	0.193	25.576	25.503	25.696	-0.0116	270	61	1.458913	0.035573006	1.4573935	296.28162	0	7.224304						238	9	3	NaN	NaN	NaN	0.14301	1	7756	7756		29.598	10.48	1	24945			25923	4885	14910	15339	20673	20673					-0.025982353015592707
TAFFGDVVL	9	Unmodified	_TAFFGDVVL_					0	0	0		ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.5087598156002	1	968.50876	967.501483	1.2688	0.0012289	-0.67001	-0.00064891	0.59881	0.00057996	968.507466830534	33.021	0.14484	33.021	32.973	33.118	0	240	79	1.4766881	0.046195745	1.4766881	299.9514	0	9.383484						267	7	4	NaN	NaN	NaN	0.043119	1	7541	7541		49.833	24.872	1	31515			25924	1200	14911	15340	20674	20674					0.016432666659625284
TAFFGDVVL	9	Unmodified	_TAFFGDVVL_					0	0	0		ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.5087598156002	1	968.50876	967.501483	0.87202	0.00084456	1.1443	0.0011082	2.0163	0.0019528	968.5101573639552	33.02	0.16874	33.018	32.969	33.138	-0.0024796	237	79	1.4784646	0.046195745	1.4769452	300.31223	0	9.383484						280	8	4	NaN	NaN	NaN	0.14301	1	7395	7395		29.598	0	1	31202			25925	1200	14911	15340	20675	20675					0.016432666659625284
TAFLETLEM	9	Unmodified	_TAFLETLEM_					0	0	0		ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;ENST00000489492.1_1_2:27688276-27688770:-|nuORF	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	ENST00000507184.5_1_2:27680991-27709067:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5125245645	1	1054.51252	1053.50525	1.3816	0.0014569	4.813	0.0050753	6.1945	0.0065322	1055.5224757498825	30.92	0.12067	30.915	30.915	31.036	-0.0050716	138	88	1.5369828	0.051332474	1.5354633	311.84058	0	10.414917						276	6	3	NaN	NaN	NaN	0.062072	1	10564	10564		41.785	8.0862	1	31922			25926	3127	14912	15341	20676	20676					-0.019364316224937284
TAFLPSQSV	9	Unmodified	_TAFLPSQSV_					0	0	0			REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.2530999387001	2	475.2531	948.491647	1.7169	0.00081597	1.0972	0.00052144	2.8141	0.0013374	475.2540348827743	19.66	0.26416	19.66	19.612	19.876	0	1338	64	0.81357855	0.038811624	0.81357855	330.60327	0	15.771362						307	12	2	NaN	NaN	NaN	0.2345	1	7048	7048		23.118	1.3465	1	61463	+		25927	9954	14913	15342	20677	20677					0.015340786605861467
TAFLSVLIW	9	Unmodified	_TAFLSVLIW_					0	0	0		ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	ENSG00000167191|ENST00000300571|GPRC5B	ENSG00000167191|ENST00000300571|GPRC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.6029945518	1	1049.60299	1048.59572	1.4408	0.0015123	-1.4254	-0.0014961	0.01544	1.6206E-05	1049.6034529507372	35.458	0.072388	35.458	35.458	35.53	0	90	46	1.5652816	0.026506305	1.5652816	317.6014	0	5.378235						56	4	2	NaN	NaN	NaN	0.47587	1	10584	10584		10.605	0	1	4203.1			25928	4533	14914	15343	20678	20678					0.07336405488103992
TAFPGTDKL	9	Unmodified	_TAFPGTDKL_					0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.2530999387	2	475.2531	948.491647	0.9633	0.00045781	1.978	0.00094004	2.9413	0.0013979	475.25466542398084	19.683	0.21661	19.669	19.621	19.837	-0.014141	1341	61	0.8117308	0.036961496	0.81021136	329.85242	0	15.019562						211	10	2	NaN	NaN	NaN	0.054111	1	6918	6918		45.165	24.716	1	51944			25929	4417	14915	15344	20679	20679					0.01534078660574778
TAFPGTDKL	9	Unmodified						0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	475.2531	948.491647	1.7169	0.00081597	1.0972	0.00052144	2.8141	0.0013374	475.2540348827743	19.66	0.26416	19.66	19.612	19.876	0	1338	64	0.81357855	0.038811624	0.81357855	330.60327		15.771362	-0.0044029	-0.00035377	0.0016836	NaN	45.165	307	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61463			25930	4417	14915	15344							0.01534078660574778
TAGGHGPT	8	Unmodified	_TAGGHGPT_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3263787740999	1	697.326379	696.319102	1.3583	0.00094717	-5.1544	-0.0035943	-3.7961	-0.0026471	697.3232036546058	23.754	0.096361	23.754	23.73	23.827	0	1272	40	0.854179	0.023961365	0.854179	174.45042	0	4.8936615						82	5	3	NaN	NaN	NaN	0.84945	1	3164	3164		0	0	1	7197.8	+		25931	9196	14916	15345	20680	20680					-0.04120447956154294
TAGGHGPT	8	Unmodified						0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	697.326379	696.319102	1.3583	0.00094717	-5.1544	-0.0035943	-3.7961	-0.0026471	697.3232036546058	23.754	0.096361	23.754	23.73	23.827	0	1272	40	0.854179	0.023961365	0.854179	174.45042		4.8936615	-0.0053552	0.00081845	0.00075972	NaN	0	82	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7197.8	+		25932	9196	14916	15345							-0.04120447956154294
TAGGHGPT	8	Unmodified						0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	697.326379	696.319102	1.4092	0.0009827	-7.1093	-0.0049575	-5.7	-0.0039748	697.3206530237873	23.778	0.09639	23.765	23.741	23.837	-0.013048	1272	40	0.854179	0.023961365	0.8526596	174.45042		4.8936768	0.0053552	-0.0005447	-0.00075972	NaN	0	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8491.2	+		25933	9196	14916	15345							-0.04120447956154294
TAGIVEAVL	9	Unmodified	_TAGIVEAVL_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5087598156	1	872.50876	871.501483	0.7988	0.00069696	0.48148	0.00042009	1.2803	0.001117	872.5086753653625	27.639	0.19301	27.629	27.581	27.774	-0.009552	390	64	1.3876231	0.037500978	1.3861036	282.29565	0	7.62912						182	9	3	NaN	NaN	NaN	0.094712	1	5545	5545		36.586	5.0254	1	21715			25934	5211	14917	15346	20681	20681					0.060592666659431416
TAGIVEAVL	9	Unmodified						0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.50876	871.501483	1.4457	0.0012614	0.069815	6.0915E-05	1.5155	0.0013223	872.509569667345	27.615	0.096479	27.615	27.591	27.688	0	387	61	1.389409	0.03571713	1.389409	282.65897		7.2662354	-0.0068869	-0.00024281	0.0016527	NaN	36.586	160	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20534			25935	5211	14917	15346							0.060592666659431416
TAGLGVPE	8	Unmodified	_TAGLGVPE_					0	0	0			REV__ENST00000394266.8_1_16:58549747-58550573:+|nuORF	REV__ENST00000394266.8_1_16:58549747-58550573:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3933957068	1	743.393396	742.386119	1.906	0.0014169	1.9703	0.0014647	3.8763	0.0028816	743.3944466744574	30.534	0.048252	30.529	30.505	30.553	-0.0057545	567	43	1.2819146	0.025165081	1.2803952	261.49405	0	5.133362						51	3	2	NaN	NaN	NaN	0.84455	1	3871	3871		2.7852	1.3456	1	3406.4	+		25936	11465	14918	15347	20682	20682					0.004621625349500391
TAGLMTQV	8	Unmodified	_TAGLMTQV_					0	0	0		ENST00000315762.5_9:67793260-67793749:+|nuORF	ENST00000315762.5_9:67793260-67793749:+|nuORF	ENST00000315762.5_9:67793260-67793749:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	820.4233156267001	1	820.423316	819.416039	1.8517	0.0015192	-5.1367	-0.0042143	-3.285	-0.0026951	820.4197829921678	23.971	0.12062	23.958	23.91	24.03	-0.01305	504	43	1.3196158	0.025105953	1.3180964	268.72537	0	5.1125793						105	6	2	NaN	NaN	NaN	0.69898	1	4901	4901		19.118	0	1	7117			25937	6466	14919	15348	20683	20683					-0.000892217913587956
TAGPEAAL	8	Unmodified	_TAGPEAAL_					0	0	0		ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C;ENSG00000172725|ENST00000341356|CORO1B	ENSG00000110880|ENST00000261401|CORO1C;ENSG00000172725|ENST00000341356|CORO1B	ENSG00000110880|ENST00000261401|CORO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.3777456426	1	729.377746	728.370469	1.9941	0.0014544	-0.50177	-0.00036598	1.4923	0.0010885	729.3774668514777	18.652	0.21586	18.652	18.58	18.796	0	696	43	1.2044523	0.02527833	1.2044523	245.77847	0	5.158249						151	10	2	NaN	NaN	NaN	0.14214	1	3741	3741		55.947	5.9148	1	14394			25938	1783;4848	14920	15349	20684	20684					-0.004581239821050076
TAGPEEAAL	9	Unmodified	_TAGPEEAAL_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4203387388001	1	858.420339	857.413062	2.5027	0.0021484	-1.2874	-0.0011051	1.2154	0.0010433	858.4192988860964	18.652	0.2399	18.652	18.58	18.82	0	498	67	1.3232021	0.039452434	1.3232021	269.25867	0	8.028168						336	11	3	NaN	NaN	NaN	0.028349	1	5503	5503		61.271	19.487	1	37730			25939	2473	14921	15350	20685	20685					-0.021347736445136434
TAGPEEAAL	9	Unmodified	_TAGPEEAAL_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4203387388001	1	858.420339	857.413062	1.6668	0.0014308	-0.28155	-0.00024169	1.3852	0.0011891	858.4201135726245	18.674	0.21596	18.66	18.588	18.804	-0.014059	495	82	1.3249949	0.048416257	1.3234755	269.62347	0	9.852234						286	10	2	NaN	NaN	NaN	0.078597	1	5366	5366		38.918	12.803	1	38225			25940	2473	14921	15350	20686	20686					-0.021347736445136434
TAGPNPTL	8	Unmodified	_TAGPNPTL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4042947441	1	770.404295	769.397018	2.1425	0.0016506	-1.6969	-0.0013073	0.44565	0.00034333	770.4027576506038	17.717	0.21576	17.717	17.669	17.885	0	606	61	1.2585332	0.0359962	1.2585332	256.56113	0	7.3381042						239	10	2	NaN	NaN	NaN	0.059364	1	4348	4348		75.698	36.24	1	40659			25941	5078	14922	15351	20687	20687					0.0030956490923017554
TAGPNPTL	8	Unmodified	_TAGPNPTL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.4042947441	1	770.404295	769.397018	2.0282	0.0015625	-0.19512	-0.00015032	1.8331	0.0014122	770.4039200008236	17.738	0.21584	17.724	17.676	17.892	-0.013786	603	55	1.2603331	0.032393098	1.2588136	256.92798	0	6.6035614						278	10	3	NaN	NaN	NaN	0.034406	1	4274	4274		85.344	32.72	1	41271			25942	5078	14922	15351	20688	20688					0.0030956490923017554
TAGPPTAC	8	Unmodified	_TAGPPTAC_					0	0	0			REV__nc|ENSG00000164078|Q04912-5|MST1R	REV__nc|ENSG00000164078|Q04912-5|MST1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.3236015821	1	717.323602	716.316325	1.4334	0.0010282	4.8691	0.0034927	6.3025	0.0045209	717.3267622995182	20.598	0.072237	20.584	20.535	20.608	-0.014088	585	46	1.2711272	0.026981354	1.2696078	259.46463	0	5.507477						74	4	2	NaN	NaN	NaN	0.77489	1	3464	3464		12.588	3.4647	1	4949.8	+		25943	10317	14923	15352	20689	20689					-0.05318039405312902
TAGSIGTVRY	10	Unmodified	_TAGSIGTVRY_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.7747308378	2	512.774731	1023.53491	2.2224	0.0011396	-2.8957	-0.0014849	-0.67337	-0.00034529	512.7733347414347	17.645	0.16784	17.645	17.573	17.741	0	1326	55	0.8209676	0.033232927	0.8209676	333.2563	0	13.490295						150	8	2	NaN	NaN	NaN	0.31086	1	9509	9509		27.296	4.1786	1	16956	+		25944	9007	14924	15353	20690	20690					0.02408268437852712
TAGSIGTVRY	10	Unmodified						0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.774731	1023.53491	2.2224	0.0011396	-2.8957	-0.0014849	-0.67337	-0.00034529	512.7733347414347	17.645	0.16784	17.645	17.573	17.741	0	1326	55	0.8209676	0.033232927	0.8209676	333.2563		13.490295	0.0084434	-0.00078275	0.00075972	NaN	27.296	150	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16956	+		25945	9007	14924	15353							0.02408268437852712
TAHFEQNTL	9	Unmodified	_TAHFEQNTL_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7565380846501	2	530.756538	1059.49852	1.8459	0.00097973	-2.5866	-0.0013729	-0.74069	-0.00039313	530.7548004183187	16.086	0.071966	16.086	16.038	16.11	0	1281	76	0.84864825	0.04611945	0.84864825	344.33752	0	18.71286						183	4	3	NaN	NaN	NaN	0.16939	1	11052	11052		27.296	3.9618	1	27780			25946	3822	14925	15354	20691	20691					-0.028846084588622034
TAHFEQNTL	9	Unmodified	_TAHFEQNTL_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7565380846501	2	530.756538	1059.49852	1.6026	0.00085059	-1.3848	-0.00073497	0.21784	0.00011562	530.7557981968641	16.107	0.09589	16.094	16.047	16.142	-0.012611	1281	79	0.84864825	0.047961593	0.8471288	344.33752	0	19.460358						209	5	3	NaN	NaN	NaN	0.33202	1	10818	10818		16.858	1.0364	1	30710			25947	3822	14925	15354	20692	20692					-0.028846084588622034
TAHHVLGAGLA	11	Unmodified	_TAHHVLGAGLA_					0	0	0			REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7907152530001	2	523.790715	1045.56688	0.74804	0.00039182	-1.5171	-0.00079463	-0.76904	-0.00040282	523.7898233619309	12.748	0.096092	12.748	12.724	12.82	0	1548	31	0.6837494	0.01861757	0.6837494	277.4775	0	7.5553284						74	5	2	NaN	NaN	NaN	0.77039	1	10455	10455		1.9246	0.48507	1	6650.7	+		25948	9903	14926	15355	20693	20693					0.045916809116761215
TAHPAAAA	8	Unmodified	_TAHPAAAA_					0	0	0		ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3627642803999	1	709.362764	708.355488	-0.28105	-0.00019937	0.2347	0.00016649	-0.046351	-3.288E-05	709.3643818804519	46.148	0.2881	46.159	46.015	46.303	0.010719	495	79	1.3249949	0.046625495	1.3234755	270.51724	0	9.519287						472	13	3	NaN	NaN	NaN	0.84876	1	3329	3329		0.39566	0	1	64920			25949	5938	14927	15356	20694	20694					-0.010355710594467382
TAIAAYIIL	9	Unmodified	_TAIAAYIIL_					0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5764454503002	1	948.576445	947.569169	1.5339	0.0014551	-0.49176	-0.00046647	1.0422	0.0009886	948.5763586783668	34.951	0.24111	34.951	34.879	35.12	0	183	184	1.510409	0.10834253	1.510409	306.8915	0	22.013489						775	11	4	NaN	NaN	NaN	0.023074	1	7035	7035		68.108	0	1	327480	+		25950	13476	14928	15357	20695	20695					0.09328716596769482
TAIAAYIIL	9	Unmodified						0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.576445	947.569169	1.5339	0.0014551	-0.49176	-0.00046647	1.0422	0.0009886	948.5763586783668	34.951	0.24111	34.951	34.879	35.12	0	183	184	1.510409	0.10834253	1.510409	306.8915		22.013489	0.00079572	-0.00021626	-0.00012673	NaN	68.108	775	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327480	+		25951	13476	14928	15357							0.09328716596769482
TAIAAYIIL	9	Unmodified						0	0	0			REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	REV__tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.576445	947.569169	1.7004	0.001613	-0.013927	-1.3211E-05	1.6865	0.0015997	948.5766291136423	34.95	0.24125	34.95	34.877	35.119	-4.5776E-05	180	166	1.5121819	0.0976547	1.5106624	307.25174		19.841888	-0.00079572	0.000237	0.00012673	NaN	68.108	751	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331920	+		25952	13476	14928	15357							0.09328716596769482
TAIASLTLI	9	Unmodified	_TAIASLTLI_					0	0	0			REV__ENSG00000109182|ENST00000226432|CWH43	REV__ENSG00000109182|ENST00000226432|CWH43	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5557100082002	1	902.55571	901.548434	1.4474	0.0013063	-0.23864	-0.00021539	1.2087	0.0010909	902.5555534593343	32.442	0.12064	32.442	32.394	32.514	0	285	46	1.4500183	0.02669251	1.4500183	294.83643	0	5.42749						132	6	2	NaN	NaN	NaN	0.27442	1	6117	6117		20.555	0	1	11487	+		25953	9054	14929	15358	20696	20696					0.09372126217101595
TAIGIGDMF	9	Unmodified	_TAIGIGDMF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4495303772001	1	924.44953	923.442254	1.7585	0.0016256	0.30842	0.00028511	2.0669	0.0019107	924.4495473327328	30.391	0.16891	30.391	30.342	30.511	0	348	94	1.412609	0.055270195	1.412609	287.1275	0	11.234253						256	8	2	NaN	NaN	NaN	0.028349	1	6469	6469		61.271	26.832	1	40296			25954	3358	14930	15359	20697	20697					-0.022529526198809435
TAIGIGDMF	9	Unmodified	_TAIGIGDMF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.4495303772001	1	924.44953	923.442254	0.71188	0.0006581	0.33431	0.00030906	1.0462	0.00096716	924.4492993085754	30.39	0.14479	30.383	30.335	30.48	-0.0064106	345	91	1.4143922	0.05348444	1.4128729	287.48996	0	10.871277						264	7	2	NaN	NaN	NaN	1.2958E-07	1	6344	6344		136.74	62.408	1	42436			25955	3358	14930	15359	20698	20698					-0.022529526198809435
TAIGVTVIL	9	Unmodified	_TAIGVTVIL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.5607953861	1	886.560795	885.553519	1.4539	0.001289	-1.0215	-0.00090559	0.43247	0.00038341	886.5606589811822	30.51	0.072382	30.505	30.48	30.553	-0.0057545	336	37	1.419741	0.021391511	1.4182216	288.75845	0	4.350769						68	4	2	NaN	NaN	NaN	0.094712	1	5761	5761		36.586	5.0254	1	6417.3			25956	872	14931	15360	20699	20699					0.10616430079699057
TAIIGYFII	9	Unmodified	_TAIIGYFII_					0	0	0			REV__ENSG00000021488|ENST00000023064|SLC7A9	REV__ENSG00000021488|ENST00000023064|SLC7A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5920955145001	1	1010.5921	1009.58482	1.3248	0.0013389	-0.4893	-0.00049448	0.83554	0.00084439	1010.5914882964349	35.868	0.072342	35.868	35.844	35.916	0	162	46	1.5228153	0.026573777	1.5228153	309.13983	0	5.394623						76	4	2	NaN	NaN	NaN	0.12945	1	8971	8971		31.561	1.9627	1	5516.6	+		25957	8428	14932	15361	20700	20700					0.080410031138058
TAILYEKQL	9	Unmodified	_TAILYEKQL_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8107819931	2	539.810782	1077.60701	1.4084	0.00076027	-0.54482	-0.0002941	0.86359	0.00046617	539.8109260543239	20.188	0.096239	20.174	20.15	20.246	-0.014141	1227	55	0.88180584	0.033132493	0.8802864	357.71396	0	13.440521						107	5	3	NaN	NaN	NaN	0.31471	1	11570	11570		17.97	1.3855	1	13429			25958	64	14933	15362	20701	20701					0.0713118279156788
TAILYEKQL	9	Unmodified						0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.810782	1077.60701	1.6414	0.00088603	0.56172	0.00030322	2.2031	0.0011893	539.8112246838682	20.189	0.04805	20.189	20.165	20.213	0	1227	49	0.88180584	0.029444695	0.88180584	357.71396		11.94455	0.0072212	0.00040178	0.00075972	NaN	17.97	85	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12296			25959	64	14933	15362							0.0713118279156788
TAISENYQTM	10	Oxidation (M)	_TAISENYQTM(Oxidation (M))_		TAISENYQTM(1)		TAISENYQTM(44)	0	0	1		ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.2582532836	2	587.258253	1172.50195	1.7331	0.0010178	-0.42871	-0.00025176	1.3044	0.00076602	587.2584536312621	16.467	0.11982	16.454	16.43	16.55	-0.012995	1221	58	0.885486	0.034963727	0.88396657	358.83966	0	14.168884						184	6	3	NaN	NaN	NaN	0.1159	1	15010	15010		43.776	15.987	1	20985			25960	5832	14934	15363	20702	20702		597			-0.07739726467184482
TAISLFYE	8	Unmodified	_TAISLFYE_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4771253362	1	943.477125	942.469849	1.4769	0.0013934	-0.28225	-0.0002663	1.1946	0.0011271	943.4773189057083	28.701	0.096525	28.701	28.653	28.75	0	243	52	1.4749115	0.03020978	1.4749115	299.70218	0	6.138611						84	5	2	NaN	NaN	NaN	0.80071	1	6872	6872		9.1232	0.83292	1	8751.8			25961	4557	14935	15364	20703	20703					-0.0036872608800422313
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5611893166	1	1056.56119	1055.55391	1.9273	0.0020363	0.31504	0.00033286	2.2423	0.0023692	1056.5625994919249	36.736	0.096203	36.736	36.688	36.784	0	99	52	1.5599792	0.030043602	1.5599792	316.49844	0	6.095459						78	5	2	NaN	NaN	NaN	0.12945	1	10901	10901		31.561	11.006	1	4710.6			25962	4557	14936	15365	20704	20704					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5611893166	1	1056.56119	1055.55391	2.6246	0.0027731	0.82514	0.00087181	3.4497	0.0036449	1056.5614544139892	34.107	0.55486	34.107	34.035	34.589	0	78	1036	1.5723488	0.6196291	1.5723488	319.00806	0	125.714264						4709	24	5	NaN	NaN	NaN	0.0062755	1	10902	10902		99.986	52.85	1	7129300			25963	4557	14936	15365	20705	20705					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	2.1646	0.002287	-1.4911	-0.0015754	0.67349	0.00071158	1056.5597826972808	35.094	0.79602	35.094	34.781	35.577	-4.5776E-05	87	166	1.5670487	0.09731352	1.5655292	317.93274	0	19.743591						3114	34	3	NaN	NaN	NaN	0.011942	1	10672	10672		87.021	49.718	1	1265600			25964	4557	14936	15365	20706	20706					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	0.95327	0.0010072	0.24947	0.00026358	1.2027	0.0012708	1057.5643868435504	42.217	0.095924	42.226	42.202	42.298	0.0089951	90	58	1.5652816	0.033578157	1.5637622	317.57422	0	6.812561						129	5	3	NaN	NaN	NaN	0.016254	1	10674	10674		76.739	34.955	1	12765			25965	4557	14936	15365	20707	20707					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	1.4716	0.0015549	0.90228	0.00095332	2.3739	0.0025082	1056.5619504804727	41.135	0.14434	41.143	41.022	41.167	0.0074921	93	40	1.5635144	0.022979379	1.5619949	317.21567	0	4.662201						89	7	2	NaN	NaN	NaN	0.36492	1	10676	10676		15.175	3.1267	1	5489.5			25966	4557	14936	15365	20708	20708					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	2.7659	0.0029224	0.48768	0.00051527	3.2536	0.0034376	1056.5613680431525	34.106	0.55475	34.105	34.008	34.563	-0.0012474	75	1042	1.5741152	0.62328833	1.5725957	319.36642	0	126.456665						2882	24	2	NaN	NaN	NaN	0.021105	1	10677	10677		70.6	36.161	1	6827200			25967	4557	14936	15365	20709	20709					0.0283580500890821
TAISLFYEL	9	Unmodified	_TAISLFYEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;EEF2|p.S82L|1|0.19|ENSG00000167658|chr19:3983265-3983265|G/A|missense_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5611893166	1	1056.56119	1055.55391	1.6822	0.0017774	2.1393	0.0022603	3.8216	0.0040377	1056.5634408752185	41.304	0.072216	41.312	41.288	41.36	0.0082588	96	49	1.5617468	0.028277874	1.5602274	316.85706	0	5.7371826						63	4	2	NaN	NaN	NaN	0.10956	1	10678	10678		34.439	15.32	1	3806.6			25968	4557	14936	15365	20710	20710					0.0283580500890821
TAITEELAV	9	Unmodified	_TAITEELAV_					0	0	0		ENSG00000104722|ENST00000221166|NEFM;nc|ENSG00000104722|P07197-2|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5091537461	1	946.509154	945.501877	1.8356	0.0017374	-3.2594	-0.0030851	-1.4239	-0.0013477	946.5065296724528	25.322	0.072348	25.322	25.298	25.371	0	345	52	1.4143922	0.030309439	1.4143922	287.39142	0	6.1586						91	4	2	NaN	NaN	NaN	0.39244	1	6964	6964		14.042	0	1	10007			25969	1488	14937	15366	20711	20711					0.026946415951329072
TAITEELAV	9	Unmodified	_TAITEELAV_					0	0	0		ENSG00000104722|ENST00000221166|NEFM;nc|ENSG00000104722|P07197-2|NEFM	ENSG00000104722|ENST00000221166|NEFM	ENSG00000104722|ENST00000221166|NEFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5091537461	1	946.509154	945.501877	1.9834	0.0018773	-2.2129	-0.0020945	-0.22945	-0.00021717	946.5054705881366	25.322	0.072369	25.31	25.31	25.382	-0.012011	342	58	1.4161754	0.03387165	1.4146559	287.75372	0	6.882416						80	4	2	NaN	NaN	NaN	0.094712	1	6831	6831		36.586	0	1	9279.5			25970	1488	14937	15366	20712	20712					0.026946415951329072
TAIVQGDSL	9	Unmodified	_TAIVQGDSL_					0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;DLG3|p.E792D|1|0.06|ENSG00000082458|chrX:70502191-70502191|G/C|missense_variant	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.4781879687001	1	903.478188	902.470912	1.6331	0.0014754	-3.0484	-0.0027542	-1.4154	-0.0012787	903.475021863775	20.838	0.048252	20.838	20.838	20.887	0	393	37	1.3858368	0.021434784	1.3858368	281.78195	0	4.3583374						55	3	2	NaN	NaN	NaN	0.25548	1	6125	6125		21.771	2.6075	1	4325.8			25971	935	14938	15367	20713	20713					0.0157748828091826
TAIVQGDSL	9	Unmodified	_TAIVQGDSL_					0	0	0		nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;DLG3|p.E792D|1|0.06|ENSG00000082458|chrX:70502191-70502191|G/C|missense_variant	nc|ENSG00000082458|Q92796-3|DLG3	nc|ENSG00000082458|Q92796-3|DLG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.4781879687001	1	903.478188	902.470912	1.6766	0.0015148	-0.60932	-0.00055051	1.0673	0.0009643	903.479172873886	20.863	0.096296	20.849	20.801	20.897	-0.014088	393	43	1.3858368	0.025007248	1.3843174	281.78192	0	5.084717						81	5	2	NaN	NaN	NaN	0.13196	1	5998	5998		31.198	10.749	1	5669.6			25972	935	14938	15367	20714	20714					0.0157748828091826
TAIYEDFSF	9	Unmodified	_TAIYEDFSF_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1092.4884183039999	1	1092.48842	1091.48114	2.2732	0.0024834	0.49029	0.00053563	2.7635	0.0030191	1092.489079194146	30.173	0.12067	30.173	30.149	30.27	0	132	67	1.5405227	0.03893149	1.5405227	312.4182	0	7.8953247						220	6	3	NaN	NaN	NaN	0.094712	1	12449	12449		36.586	4.1337	1	28298			25973	3790	14939	15368	20715	20715					-0.06093948784518943
TAIYEDFSF	9	Unmodified	_TAIYEDFSF_					0	0	0		nc|ENSG00000152818|P46939-2|UTRN;ENSG00000152818|ENST00000367545|UTRN	nc|ENSG00000152818|P46939-2|UTRN	nc|ENSG00000152818|P46939-2|UTRN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.4884183039999	1	1092.48842	1091.48114	1.017	0.0011111	2.7095	0.0029601	3.7265	0.0040712	1092.490883817071	30.172	0.096548	30.166	30.118	30.214	-0.0064106	132	70	1.5405227	0.040703297	1.5390033	312.4182	0	8.254639						194	5	3	NaN	NaN	NaN	0.032826	1	12131	12131		55.413	24.803	1	26200			25974	3790	14939	15368	20716	20716					-0.06093948784518943
TAKKNLHLRT	10	Unmodified	_TAKKNLHLRT_					0	0	0			REV__ENST00000490110.5_1_9:114659495-114678089:+|nuORF	REV__ENST00000490110.5_1_9:114659495-114678089:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.5752897186667	3	394.57529	1180.70404	0.54414	0.0002147	1.6315	0.00064374	2.1756	0.00085844	394.5760696155488	39.093	0.16888	39.093	39.044	39.213	0	1434	61	0.75435036	0.037081838	0.75435036	458.50467	0	22.53888						371	8	5	NaN	NaN	NaN	0.77759	1	15856	15856		1.1021	0.18327	1	67353	+		25975	9973	14940	15369	20717	20717					0.12091589791225488
TALALSITL	9	Unmodified	_TALALSITL_					0	0	0		nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5557100082	1	902.55571	901.548434	1.4528	0.0013112	-1.3757	-0.0012417	0.077031	6.9525E-05	902.5559581413359	32.345	0.07243	32.345	32.273	32.345	0	282	43	1.4517976	0.024914384	1.4517976	295.19824	0	5.0658875						79	4	2	NaN	NaN	NaN	0.14301	1	6114	6114		29.598	6.2639	1	5900.6			25976	5345	14941	15370	20718	20718					0.09372126217078858
TALALSITL	9	Unmodified	_TALALSITL_					0	0	0		nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5557100082	1	902.55571	901.548434	1.4583	0.0013162	-0.71646	-0.00064665	0.7418	0.00066952	902.5545923364791	31.79	0.1448	31.79	31.742	31.887	0	282	112	1.4517976	0.065876484	1.4517976	295.19824	0	13.394867						404	7	4	NaN	NaN	NaN	0.032764	1	6115	6115		55.494	8.3578	1	125800			25977	5345	14941	15370	20719	20719					0.09372126217078858
TALALSITL	9	Unmodified	_TALALSITL_					0	0	0		nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.5557100082	1	902.55571	901.548434	1.2242	0.0011049	-1.0273	-0.0009272	0.19692	0.00017773	902.5545097001345	31.789	0.14484	31.785	31.737	31.881	-0.0044174	279	124	1.4535767	0.072998405	1.4520572	295.56	0	14.842987						499	7	4	NaN	NaN	NaN	0.0072287	1	5992	5992		98.041	17.402	1	144470			25978	5345	14941	15370	20720	20720					0.09372126217078858
TALALSITL	9	Unmodified	_TALALSITL_					0	0	0		nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.5557100082	1	902.55571	901.548434	1.35	0.0012185	0.064556	5.8265E-05	1.4146	0.0012767	902.5561684399603	32.175	0.096489	32.172	32.099	32.196	-0.0037613	282	46	1.4517976	0.026686788	1.4502782	295.19824	0	5.4263						89	5	2	NaN	NaN	NaN	0.10956	1	5993	5993		34.439	4.8405	1	6952.1			25979	5345	14941	15370	20721	20721					0.09372126217078858
TALALSITL	9	Unmodified						0	0	0		nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	nc|ENSG00000184277|Q9BRN9-2|TM2D3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	902.55571	901.548434	1.3766	0.0012425	-0.21379	-0.00019296	1.1628	0.0010495	902.5560554236262	32.128	0.024124	32.128	32.104	32.128	0	282	52	1.4517976	0.030248284	1.4517976	295.19824		6.150482	-0.021693	-8.7491E-05	0.00075972	NaN	34.439	54	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6428.3			25980	5345	14941	15370							0.09372126217078858
TALFVEHVL	9	Unmodified	_TALFVEHVL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7923922747001	2	514.792392	1027.57023	2.6294	0.0013536	-2.4623	-0.0012676	0.16714	8.6044E-05	514.7910811595418	25.805	0.19304	25.805	25.732	25.926	0	1275	76	0.85233563	0.04608953	0.85233563	345.9715	0	18.70819						375	9	5	NaN	NaN	NaN	0.030391	1	9688	9688		58.599	27.038	1	149630			25981	13662	14942	15371	20722	20722					0.057549309656678815
TALFVEHVL	9	Unmodified	_TALFVEHVL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7923922747001	2	514.792392	1027.57023	2.1541	0.0011089	-0.84414	-0.00043456	1.3099	0.00067435	514.7919445293495	25.829	0.26548	25.817	25.696	25.962	-0.011602	1275	73	0.85233563	0.044248343	0.8508162	345.9715	0	17.960846						376	12	5	NaN	NaN	NaN	0.0094682	1	9499	9499		93.472	49.169	1	144160			25982	13662	14942	15371	20723	20723					0.057549309656678815
TALFVEHVL	9	Unmodified	_TALFVEHVL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5775080828	1	1028.57751	1027.57023	2.5516	0.0026245	1.5471	0.0015913	4.0987	0.0042158	1028.5782054314461	25.829	0.024124	25.817	25.817	25.841	-0.011602	150	46	1.5299006	0.02655971	1.5283811	310.5049	0	5.390503						49	2	2	NaN	NaN	NaN	0.49672	1	9500	9500		9.746	1.5012	1	4508.4			25983	13662	14942	15371	20724	20724					0.057549309656678815
TALFVEHVL	9	Unmodified						0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559603.1_1_17:78337492-78338684:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.57751	1027.57023	2.3381	0.0024049	-3.206	-0.0032976	-0.86785	-0.00089265	1028.5733909739904	25.805	0.072397	25.805	25.781	25.853	0	144	43	1.533442	0.024787784	1.533442	311.22372		5.0308533	-0.0061422	-0.0022741	0.0025305	NaN	9.746	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4902.5			25984	13662	14942	15371							0.057549309656678815
TALGPELLAL	10	Unmodified	_TALGPELLAL_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	997.5928237960001	1	997.592824	996.585547	1.4244	0.001421	-0.46534	-0.00046422	0.95908	0.00095677	997.594878252777	32.949	0.072392	32.949	32.925	32.997	0	237	52	1.4784646	0.030196905	1.4784646	300.18915	0	6.131195						81	4	3	NaN	NaN	NaN	0.040041	1	8458	8458		55.413	29.298	1	5909.3			25985	4228	14943	15372	20725	20725					0.08711797762850892
TALGPELLAL	10	Unmodified						0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	997.592824	996.585547	1.6375	0.0016336	-0.63536	-0.00063383	1.0021	0.00099972	997.5934305637177	32.948	0.072334	32.945	32.921	32.993	-0.0024757	234	43	1.4802408	0.024864078	1.4787214	300.5498		5.0484314	-0.0017998	-8.3593E-05	0.00012843	NaN	55.413	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5291.1			25986	4228	14943	15372							0.08711797762850892
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.8184100599501	2	533.81841	1065.62227	1.5619	0.00083378	-0.91008	-0.00048582	0.65184	0.00034796	533.8181814069164	31.332	0.28962	31.332	31.284	31.573	0	1227	70	0.88180584	0.042333663	0.88180584	357.76474	0	17.175537						608	13	5	NaN	NaN	NaN	0.0042638	1	11381	11381		104.2	48.705	1	544390			25987	2315	14944	15373	20726	20726					0.0920809437943717
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8184100599501	2	533.81841	1065.62227	0.30605	0.00016338	-2.526	-0.0013484	-2.2199	-0.001185	533.8178542793954	31.765	0.072447	31.761	31.737	31.809	-0.0044155	1227	34	0.88180584	0.02023995	0.8802864	357.76474	0	8.211731						94	4	3	NaN	NaN	NaN	0.62619	1	11118	11118		4.4131	0.84331	1	9589.8			25988	2315	14944	15373	20727	20727					0.0920809437943717
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8184100599501	2	533.81841	1065.62227	0.30387	0.00016221	-0.58153	-0.00031043	-0.27765	-0.00014822	533.8180255859638	32.055	0.16893	32.051	31.954	32.123	-0.0037613	1227	37	0.88180584	0.02208358	0.8802864	357.76474	0	8.959686						141	8	3	NaN	NaN	NaN	0.38313	1	11120	11120		14.425	2.1653	1	19677			25989	2315	14944	15373	20728	20728					0.0920809437943717
TALNLFFKL	9	Unmodified	_TALNLFFKL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8184100599501	2	533.81841	1065.62227	1.057	0.00056423	-0.27958	-0.00014924	0.77739	0.00041499	533.8183951908504	31.355	0.41024	31.35	31.277	31.688	-0.0050716	1224	67	0.883646	0.040486515	0.88212657	358.51132	0	16.426117						656	18	6	NaN	NaN	NaN	0.0052656	1	11121	11121		102.05	15.254	1	501140			25990	2315	14944	15373	20729	20729					0.0920809437943717
TALNLFFKL	9	Unmodified						0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	533.81841	1065.62227	1.2037	0.00064258	-2.9301	-0.0015642	-1.7264	-0.00092158	533.8170002597752	31.694	0.14482	31.694	31.621	31.766	0	1230	34	0.8799654	0.02024436	0.8799654	357.01807		8.213501	-0.03346	-0.0002452	-0.00016048	NaN	4.4131	110	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12553			25991	2315	14944	15373							0.0920809437943717
TALQEVYTL	9	Unmodified	_TALQEVYTL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5513529118	1	1037.55135	1036.54408	1.452	0.0015065	0.026529	2.7525E-05	1.4785	0.001534	1037.551160225574	26.795	0.097002	26.795	26.746	26.843	0	138	76	1.5369828	0.044266224	1.5369828	311.90656	0	8.983124						194	5	3	NaN	NaN	NaN	0.030545	1	10070	10070		58.398	15.403	1	31241			25992	2831	14945	15374	20730	20730					0.027266170035318282
TALVESEDL	9	Unmodified	_TALVESEDL_					0	0	0		ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4833329260999	1	976.483333	975.476056	1.9357	0.0018902	-1.7836	-0.0017416	0.15218	0.0001486	976.4813590963972	22.549	0.12059	22.549	22.525	22.645	0	264	58	1.4624695	0.033785462	1.4624695	297.02914	0	6.861847						167	6	3	NaN	NaN	NaN	0.0040938	1	7758	7758		104.71	30.379	1	15300			25993	6304	14946	15375	20731	20731					-0.012662526471444835
TALVESEDL	9	Unmodified	_TALVESEDL_					0	0	0		ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	ENST00000261509.10_1_4:169846154-169847533:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4833329260999	1	976.483333	975.476056	1.5904	0.001553	-0.82753	-0.00080807	0.76291	0.00074497	976.4822130407292	22.548	0.096483	22.535	22.511	22.607	-0.01354	270	55	1.458913	0.032009006	1.4573935	296.3068	0	6.5010376						114	5	2	NaN	NaN	NaN	2.9468E-07	1	7598	7598		130.62	15.109	1	14496			25994	6304	14946	15375	20732	20732					-0.012662526471444835
TALVFVSF	8	Unmodified	_TALVFVSF_					0	0	0		ENST00000413014.6_1_19:41869985-41884317:+|nuORF;ENST00000604123.5_1_19:41860151-41884317:+|nuORF	ENST00000413014.6_1_19:41869985-41884317:+|nuORF	ENST00000413014.6_1_19:41869985-41884317:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.24982896825003	2	442.249829	882.485105	1.7794	0.00078692	-3.7406	-0.0016543	-1.9612	-0.00086735	442.24743091896994	15.34	0.071918	15.328	15.28	15.352	-0.012202	1386	37	0.78399014	0.022208154	0.7824707	318.91995	0	9.034058						51	4	2	NaN	NaN	NaN	0.72043	1	5713	5713		17.78	0	1	3885.5			25995	6870	14947	15376	20733	20733					0.03916185499861058
TALWELHAL	9	Unmodified	_TALWELHAL_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2900167612501	2	527.290017	1052.56548	0.91425	0.00048208	-0.048331	-2.5485E-05	0.86592	0.00045659	527.2900307647652	27.325	0.19307	27.315	27.291	27.484	-0.010124	1182	103	0.9093879	0.06250924	0.90786844	369.01367	0	25.365143						311	9	3	NaN	NaN	NaN	0.043119	1	10526	10526		49.833	23.718	1	59318			25996	4876	14948	15377	20734	20734					0.04130046822888289
TALWELHAL	9	Unmodified						0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.290017	1052.56548	1.4137	0.00074542	-1.2071	-0.00063651	0.20655	0.00010891	527.2893922681143	27.302	0.19308	27.302	27.253	27.446	0	1182	79	0.9093879	0.047780514	0.9093879	369.01367		19.388489	-0.0066305	-0.0005919	0.00075972	NaN	49.833	305	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57770			25997	4876	14948	15377							0.04130046822888289
TAMDVVYAL	9	Unmodified	_TAMDVVYAL_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.74933582925	2	491.749336	981.484119	1.4833	0.00072943	-2.0462	-0.0010062	-0.56289	-0.0002768	491.7484757971568	29.256	0.12064	29.256	29.232	29.353	0	1314	52	0.8283535	0.03137821	0.8283535	336.44553	0	12.744598						206	6	4	NaN	NaN	NaN	0.23112	1	7936	7936		23.334	2.779	1	29774			25998	3988	14949	15378	20735	20735					-0.007363969313587404
TAMDVVYAL	9	Unmodified	_TAMDVVYAL_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4913951919001	1	982.491395	981.484119	2.417	0.0023747	0.33252	0.0003267	2.7495	0.0027014	982.492124908718	29.256	0.45855	29.256	29.063	29.522	0	225	301	1.4855686	0.17807436	1.4855686	301.69485	0	36.164						1719	20	6	NaN	NaN	NaN	0.023074	1	7938	7938		68.108	2.4363	1	1447800			25999	3988	14949	15378	20736	20736					-0.007363969313587404
TAMDVVYAL	9	Unmodified	_TAMDVVYAL_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4913951919001	1	982.491395	981.484119	1.498	0.0014718	-0.74193	-0.00072894	0.75607	0.00074284	982.4912518703885	29.69	0.16889	29.683	29.683	29.852	-0.0070648	231	49	1.4820169	0.028419137	1.4804975	300.97357	0	5.771454						136	8	2	NaN	NaN	NaN	0.29681	1	7764	7764		19.118	3.6556	1	10566			26000	3988	14949	15378	20737	20737					-0.007363969313587404
TAMDVVYAL	9	Unmodified						0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	982.491395	981.484119	2.3818	0.0023401	0.0045186	4.4394E-06	2.3863	0.0023445	982.4919356011994	29.256	0.4826	29.248	29.151	29.634	-0.0077229	225	268	1.4855686	0.15841007	1.4840492	301.69485		32.1705	-0.0042463	-0.00015771	-0.00075972	NaN	68.108	1714	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1337100			26001	3988	14949	15378							-0.007363969313587404
TAMDVVYAL	9	Oxidation (M)	_TAM(Oxidation (M))DVVYAL_		TAM(1)DVVYAL		TAM(65)DVVYAL	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4863098140002	1	998.48631	997.479033	2.6518	0.0026478	-0.61144	-0.00061051	2.0404	0.0020373	998.4863196933999	25.419	0.072393	25.419	25.346	25.419	0	249	205	1.4713576	0.1209358	1.4713576	298.74246	0	24.554657						568	4	5	NaN	NaN	NaN	0.025843	1	8475	8475		64.55	32.097	1	447890			26002	3988	14949	15379	20738	20738		431			-0.019807007939675714
TAMELEFKL	9	Unmodified	_TAMELEFKL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.28354278735	2	541.283543	1080.55253	1.4628	0.0007918	-5.6541	-0.0030605	-4.1913	-0.0022687	541.2828088466725	27.036	0.16895	27.036	27.012	27.181	0	1248	91	0.8689189	0.055292487	0.8689189	352.47412	0	22.42923						393	8	4	NaN	NaN	NaN	0.090258	1	12006	12006		37.231	21.768	1	66357			26003	3392	14950	15380	20739	20739					0.015478476484986459
TAMELEFKLL	10	Oxidation (M)	_TAM(Oxidation (M))ELEFKLL_		TAM(1)ELEFKLL		TAM(52)ELEFKLL	0	0	1		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.8230320886	2	605.823032	1209.63151	0.65878	0.0003991	-8.3688	-0.00507	-7.7101	-0.0046709	605.8179622440953	27.494	0.12067	27.484	27.46	27.581	-0.009552	1146	64	0.93142134	0.03854406	0.9299019	377.32007	0	15.614258						118	6	2	NaN	NaN	NaN	0.05475	1	16048	16048		52.195	31.746	1	26001			26004	3392	14951	15381	20740	20740		375			0.035080748827795105
TAMKGAGS	8	Unmodified	_TAMKGAGS_					0	0	0			REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3501506836002	1	722.350151	721.342874	1.0599	0.00076563	3.9601	0.0028606	5.02	0.0036262	722.3524963020564	32.394	0.0965	32.394	32.37	32.466	0	678	61	1.2152823	0.036100388	1.2152823	248.03304	0	7.3678894						91	5	2	NaN	NaN	NaN	0.84756	1	3613	3613		1.072	0	1	5460.7	+		26005	12736	14952	15382	20741	20741					-0.028943505139636727
TAMKGAGS	8	Unmodified						0	0	0			REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	REV__ENST00000550578.1_1_12:53547103-53547616:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.350151	721.342874	1.0599	0.00076563	3.9601	0.0028606	5.02	0.0036262	722.3524963020564	32.394	0.0965	32.394	32.37	32.466	0	678	61	1.2152823	0.036100388	1.2152823	248.03304		7.3678894	0	0	0	NaN	1.072	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5460.7	+		26006	12736	14952	15382							-0.028943505139636727
TAMLNGGF	8	Unmodified	_TAMLNGGF_					0	0	0			REV__tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	REV__tr|U7STJ4|U7STJ4_FUSNUElectrontransferflavoproteinalphasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01367PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.3814508120003	1	810.381451	809.374174	2.036	0.00165	-0.84469	-0.00068452	1.1914	0.00096545	810.3803461251514	24.985	0.096546	24.985	24.936	25.033	0	504	46	1.3196158	0.026895046	1.3196158	268.78033	0	5.477997						71	5	2	NaN	NaN	NaN	0.65075	1	4879	4879		22.126	5.6899	1	4472.1	+		26007	13497	14953	15383	20742	20742					-0.03813777479865621
TAMNPDTKE	9	Unmodified	_TAMNPDTKE_					0	0	0			REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.7291317034	2	503.729132	1005.44371	0.95124	0.00047917	-2.5222	-0.0012705	-1.571	-0.00079134	503.72779911283084	29.256	0.14476	29.248	29.224	29.368	-0.0077229	1317	79	0.8265074	0.04802394	0.82498795	335.5851	0	19.499054						164	7	3	NaN	NaN	NaN	0.46215	1	8610	8610		11.17	0.20522	1	19670	+		26008	12831	14954	15384	20743	20743					-0.058793633217760544
TAMNPDTKE	9	Unmodified						0	0	0			REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.729132	1005.44371	1.3872	0.00069877	-1.2665	-0.00063795	0.12074	6.0819E-05	503.72868718533175	29.256	0.12064	29.256	29.232	29.353	0	1317	49	0.8265074	0.02954036	0.8265074	335.5851		11.994202	0.0042463	0.00055733	0.00075972	NaN	11.17	164	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19877	+		26009	12831	14954	15384							-0.058793633217760544
TAMNPDTKE	9	Unmodified						0	0	0			REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	REV__ENST00000572544.1_1_16:3454868-3454985:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	503.729132	1005.44371	0.95124	0.00047917	-2.5222	-0.0012705	-1.571	-0.00079134	503.72779911283084	29.256	0.14476	29.248	29.224	29.368	-0.0077229	1317	79	0.8265074	0.04802394	0.82498795	335.5851		19.499054	-0.0042463	-0.00070778	-0.00075972	NaN	11.17	164	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19670	+		26010	12831	14954	15384							-0.058793633217760544
TAMSLSPCNP	10	Unmodified	_TAMSLSPCNP_					0	0	0			REV__ENST00000484738.1_1_1:244816912-244817122:+|nuORF	REV__ENST00000484738.1_1_1:244816912-244817122:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.72807745840004	2	510.728077	1019.4416	1.6051	0.00081977	-11.581	-0.0059149	-9.9762	-0.0050951	510.72183102018204	29.256	0.12064	29.256	29.232	29.353	0	1317	49	0.8265074	0.02954036	0.8265074	335.52295	0	11.992004						173	6	4	NaN	NaN	NaN	0.5358	1	9334	9334		17.97	2.507	1	22142	+		26011	12411	14955	15385	20744	20744					-0.06734115331232715
TAMSLSPCNP	10	Unmodified						0	0	0			REV__ENST00000484738.1_1_1:244816912-244817122:+|nuORF	REV__ENST00000484738.1_1_1:244816912-244817122:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.728077	1019.4416	1.6051	0.00081977	-11.581	-0.0059149	-9.9762	-0.0050951	510.72183102018204	29.256	0.12064	29.256	29.232	29.353	0	1317	49	0.8265074	0.02954036	0.8265074	335.52295		11.992004	-0.0078061	-0.00059368	-0.00016337	NaN	17.97	173	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22142	+		26012	12411	14955	15385							-0.06734115331232715
TAMTVQILL	9	Unmodified	_TAMTVQILL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.28862816525003	2	495.288628	988.562703	1.1027	0.00054614	0.025584	1.2671E-05	1.1283	0.00055881	495.28899690839995	31.596	0.024147	31.592	31.568	31.592	-0.0044174	1305	31	0.83389086	0.01845473	0.8323714	338.66104	0	7.494873						32	2	2	NaN	NaN	NaN	0.31737	1	8004	8004		17.799	0	1	2846.7			26013	1556	14956	15386	20745	20745					0.06796455373739718
TANDGEEAF	9	Unmodified	_TANDGEEAF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	953.384681514	1	953.384682	952.377405	1.8657	0.0017788	-0.69744	-0.00066493	1.1683	0.0011138	953.3831124414743	17.357	0.11989	17.357	17.309	17.429	0	399	49	1.382264	0.028591871	1.382264	280.83414	0	5.8089905						114	6	2	NaN	NaN	NaN	0.0052656	1	7139	7139		102.05	60.262	1	9936.8			26014	5007	14957	15387	20746	20746					-0.10068855892177453
TANLEAQAL	9	Unmodified	_TANLEAQAL_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.489087006	1	930.489087	929.481811	0.95629	0.00088981	0.61284	0.00057024	1.5691	0.0014601	930.4889163473342	20.766	0.12037	20.752	20.704	20.825	-0.014086	327	52	1.425088	0.030296564	1.4235686	289.63635	0	6.157501						128	6	3	NaN	NaN	NaN	0.03533	1	6459	6459		53.14	0.36063	1	10491			26015	1691	14958	15388	20747	20747					0.014248906551870277
TANLEAQAL	9	Unmodified						0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.489087	929.481811	1.6145	0.0015023	1.409	0.001311	3.0235	0.0028133	930.4907481598963	20.766	0.12048	20.766	20.718	20.838	0	330	46	1.4233059	0.026732326	1.4233059	289.27414		5.4331055	0.0068908	0.00039684	-0.00013136	NaN	53.14	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10456			26016	1691	14958	15388							0.014248906551870277
TANNDHTVL	9	Unmodified	_TANNDHTVL_					0	0	0		nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-6|ANKRD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.74088802045	2	492.740888	983.467223	2.223	0.0010954	-2.3467	-0.0011563	-0.12375	-6.0976E-05	492.73957865917964	14.069	0.43232	14.069	13.925	14.357	0	1350	61	0.80618626	0.036957502	0.80618626	327.4329	0	15.010315						608	19	3	NaN	NaN	NaN	0.03533	1	8001	8001		53.14	21.465	1	208280			26017	2763	14959	15389	20748	20748					-0.025171814929535685
TANNDHTVL	9	Unmodified	_TANNDHTVL_					0	0	0		nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-6|ANKRD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.74088802045	2	492.740888	983.467223	1.1991	0.00059086	-0.68084	-0.00033548	0.51829	0.00025538	492.7406536351793	14.069	0.4314	14.058	13.914	14.346	-0.010672	1350	58	0.80618626	0.03511536	0.8046668	327.4329	0	14.2621155						572	19	3	NaN	NaN	NaN	0.097143	1	7824	7824		36.235	7.3392	1	197380			26018	2763	14959	15389	20749	20749					-0.025171814929535685
TANVTLLRT	9	Unmodified	_TANVTLLRT_					0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	494.79292359095	2	494.792924	987.571294	1.7538	0.00086778	-3.8766	-0.0019181	-2.1228	-0.0010503	494.7908172178893	16.182	0.12003	16.182	16.134	16.254	0	1314	34	0.8283535	0.020305753	0.8283535	336.41687	0	8.246704						94	6	2	NaN	NaN	NaN	0.35794	1	8147	8147		15.463	0	1	9638.9	+		26019	11373	14960	15390	20750	20750					0.07701145334567627
TANVTLLRT	9	Unmodified						0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.792924	987.571294	1.7538	0.00086778	-3.8766	-0.0019181	-2.1228	-0.0010503	494.7908172178893	16.182	0.12003	16.182	16.134	16.254	0	1314	34	0.8283535	0.020305753	0.8283535	336.41687		8.246704	0.007881	-0.0013481	-0.00016327	NaN	15.463	94	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9638.9	+		26020	11373	14960	15390							0.07701145334567627
TANVTLLRT	9	Unmodified						0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.792924	987.571294	1.7386	0.00086024	-1.488	-0.00073625	0.2506	0.00012399	494.79162345924294	16.179	0.095934	16.166	16.118	16.214	-0.012993	1311	43	0.83019954	0.02584225	0.8286801	337.16656		10.495239	-0.007881	0.0010156	0.00016327	NaN	15.463	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8657.6	+		26021	11373	14960	15390							0.07701145334567627
TANYDFVL	8	Unmodified	_TANYDFVL_					0	0	0		ENST00000493438.5_1_9:135973976-135976008:-|nuORF;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS	ENST00000493438.5_1_9:135973976-135976008:-|nuORF	ENST00000493438.5_1_9:135973976-135976008:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4567242451	1	942.456724	941.449448	1.6021	0.0015099	-3.4477	-0.0032493	-1.8457	-0.0017395	942.4527640533393	28.363	0.072376	28.363	28.339	28.412	0	303	55	1.4393384	0.032049775	1.4393384	292.47833	0	6.5126343						112	4	2	NaN	NaN	NaN	0.82627	1	6841	6841		5.6942	1.2811	1	13158			26022	4055	14961	15391	20751	20751					-0.023618967478228114
TANYDFVL	8	Unmodified	_TANYDFVL_					0	0	0		ENST00000493438.5_1_9:135973976-135976008:-|nuORF;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS	ENST00000493438.5_1_9:135973976-135976008:-|nuORF	ENST00000493438.5_1_9:135973976-135976008:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4567242451	1	942.456724	941.449448	1.4223	0.0013405	-1.8648	-0.0017575	-0.44247	-0.00041701	942.4551152550612	28.363	0.16893	28.354	28.33	28.499	-0.0089779	306	73	1.4375578	0.042751193	1.4360384	292.1165	0	8.687164						156	8	2	NaN	NaN	NaN	0.528	1	6705	6705		29.598	2.8668	1	15099			26023	4055	14961	15391	20752	20752					-0.023618967478228114
TAPGHPHRGT	10	Unmodified	_TAPGHPHRGT_					0	0	0			REV__nc|ENSG00000185988|Q496M5-2|PLK5	REV__nc|ENSG00000185988|Q496M5-2|PLK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7624891298001	2	515.762489	1029.51043	1.126	0.00058074	-3.0778	-0.0015874	-1.9518	-0.0010067	515.7607773311621	13.541	0.1679	13.531	13.483	13.651	-0.010098	1326	73	0.8209676	0.0443058	0.81944823	333.23062	0	17.983704						181	8	2	NaN	NaN	NaN	0.44412	1	9556	9556		21.771	0	1	22858	+		26024	10985	14962	15392	20753	20753					-0.003149469250047332
TAPGPGRP	8	Unmodified	_TAPGPGRP_					0	0	0			REV__ENSG00000205502|ENST00000380392|C2CD4B	REV__ENSG00000205502|ENST00000380392|C2CD4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.4049634461	1	752.404963	751.397687	1.6644	0.0012523	-10.028	-0.0075448	-8.3632	-0.0062925	752.3966613812646	32.972	0.048244	32.969	32.945	32.993	-0.0024757	597	43	1.2639319	0.02518928	1.2624124	257.7698	0	5.1371765						56	3	2	NaN	NaN	NaN	0.82797	1	4007	4007		5.4659	0	1	4759.4	+		26025	11264	14963	15393	20754	20754					0.012044043489481737
TAPKGRNFG	9	Unmodified	_TAPKGRNFG_					0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	316.50676435213336	3	316.506764	946.498464	1.1445	0.00036225	-3.2297	-0.0010222	-2.0852	-0.00065997	316.50574730544787	12.868	0.14413	12.868	12.82	12.964	0	1533	43	0.6930556	0.026047647	0.6930556	422.44824	0	15.877167						109	7	2	NaN	NaN	NaN	0.56671	1	6996	6996		3.9281	1.3287	1	10005	+		26026	13383	14964	15394	20755	20755					0.023074363318073665
TAPKGRNFG	9	Unmodified						0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	316.506764	946.498464	1.1445	0.00036225	-3.2297	-0.0010222	-2.0852	-0.00065997	316.50574730544787	12.868	0.14413	12.868	12.82	12.964	0	1533	43	0.6930556	0.026047647	0.6930556	422.44824		15.877167	0.0037462	-0.0012219	-0.0001706	NaN	3.9281	109	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10005	+		26027	13383	14964	15394							0.023074363318073665
TAPKGRNFG	9	Unmodified						0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	316.506764	946.498464	1.5231	0.00048208	0.6514	0.00020617	2.1745	0.00068825	316.506748369941	12.87	0.11984	12.861	12.837	12.957	-0.00947	1530	40	0.6949163	0.024185777	0.69339687	423.58237		14.74231	-0.0037462	0.0024632	0.0001706	NaN	3.9281	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9463.5	+		26028	13383	14964	15394							0.023074363318073665
TAPPANQL	8	Unmodified	_TAPPANQL_					0	0	0		nc|ENSG00000204301|Q99466-2|NOTCH4;ENSG00000204301|ENST00000375023|NOTCH4	nc|ENSG00000204301|Q99466-2|NOTCH4	nc|ENSG00000204301|Q99466-2|NOTCH4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.4308438456	1	811.430844	810.423567	2.0379	0.0016536	-3.6489	-0.0029608	-1.611	-0.0013072	811.4280887295042	53.731	0.10546	53.731	53.626	53.731	0	408	49	1.3769034	0.028597951	1.3769034	280.44263	0	5.8247375						102	4	2	NaN	NaN	NaN	0.84692	1	4899	4899		1.4396	0	1	13228			26029	5876	14965	15395	20756	20756					0.0107725380055399
TARMEMLIE	9	Unmodified	_TARMEMLIE_					0	0	0		nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.2726521375502	2	547.272652	1092.53075	1.1825	0.00064713	-0.58971	-0.00032273	0.59276	0.0003244	547.2731349930855	29.474	0.14487	29.474	29.449	29.594	0	1266	55	0.85786515	0.033161104	0.85786515	347.94217	0	13.449829						136	7	2	NaN	NaN	NaN	0.62619	1	12500	12500		4.4131	0	1	11548			26030	4925	14966	15396	20757	20757					-0.01181280371702087
TARRPGAAASG	11	Unmodified	_TARRPGAAASG_					0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.77559650505003	2	507.775597	1013.53664	0.99856	0.00050705	0.64464	0.00032733	1.6432	0.00083438	507.77611064690285	34.419	0.072292	34.419	34.37	34.443	-0.00064468	1269	70	0.8560222	0.042397797	0.85450274	347.5315	0	17.2128						130	4	3	NaN	NaN	NaN	0.74794	1	8953	8953		4.3102	1.0985	1	13588			26031	5484	14967	15397	20758	20758					0.03041322246474465
TASADGTIKL	10	Unmodified	_TASADGTIKL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.76911414365003	2	488.769114	975.523675	2.1421	0.001047	-2.5651	-0.0012538	-0.42306	-0.00020678	488.76820360315645	17.909	0.14389	17.909	17.885	18.029	0	1353	40	0.8043377	0.02403146	0.8043377	326.71878	0	9.761475						113	7	2	NaN	NaN	NaN	0.6262	1	7767	7767		13.101	3.3552	1	13883			26032	5325	14968	15398	20759	20759					0.034934463437252816
TASADGTIKL	10	Unmodified	_TASADGTIKL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.76911414365003	2	488.769114	975.523675	1.8904	0.00092399	-0.085823	-4.1948E-05	1.8046	0.00088204	488.76888256215875	17.93	0.047998	17.916	17.892	17.94	-0.013786	1353	43	0.8043377	0.025884211	0.80281824	326.71878	0	10.514099						59	3	2	NaN	NaN	NaN	0.34981	1	7611	7611		25.681	5.2327	1	8819.1			26033	5325	14968	15398	20760	20760					0.034934463437252816
TASAHNSA	8	Unmodified	_TASAHNSA_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.3427571198	1	758.342757	757.335481	1.8293	0.0013873	5.3719	0.0040737	7.2012	0.005461	758.3469798918264	19.78	0.12011	19.78	19.732	19.852	0	561	73	1.2855089	0.043135524	1.2855089	262.13336	0	8.795959						182	6	2	NaN	NaN	NaN	0.80191	1	4182	4182		8.962	2.0988	1	21098	+		26034	9418	14969	15399	20761	20761					-0.05289366790043459
TASAVRRLC	9	Unmodified	_TASAVRRLC_					0	0	0		nc|ENSG00000010803|Q96GD3-6|SCMH1;nc|ENSG00000010803|Q96GD3-5|SCMH1;nc|ENSG00000010803|Q96GD3-4|SCMH1;nc|ENSG00000010803|Q96GD3-3|SCMH1;nc|ENSG00000010803|Q96GD3-2|SCMH1;nc|ENSG00000010803|Q96GD3|SCMH1;ENSG00000010803|ENST00000695335|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.77146825485	2	488.771468	975.528384	2.3449	0.0011461	-9.0506	-0.0044237	-6.7057	-0.0032775	488.7665978133227	18.002	0.072008	17.988	17.964	18.036	-0.013786	1350	31	0.80618626	0.018486738	0.8046668	327.4697	0	7.509247						43	4	2	NaN	NaN	NaN	0.58159	1	7610	7610		6.2502	0	1	3960.8			26035	395	14970	15400	20762	20762					0.03964052005483154
TASDDGYIKI	10	Unmodified	_TASDDGYIKI_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.77185379785	2	541.771854	1081.52915	1.3797	0.00074746	0.3988	0.00021606	1.7785	0.00096352	541.7722207869175	20.405	0.0721	20.405	20.405	20.477	0	1272	40	0.854179	0.023961365	0.854179	346.491	0	9.719727						81	4	2	NaN	NaN	NaN	0.47445	1	12050	12050		20.513	6.0883	1	9281			26036	3265	14971	15401	20763	20763					-0.0083487486449485
TASEMILVL	9	Unmodified	_TASEMILVL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.5383453845001	1	976.538345	975.531069	1.7211	0.0016807	-0.12246	-0.00011958	1.5986	0.0015611	976.538720085559	32.008	0.26545	32.008	31.959	32.225	0	222	112	1.4873441	0.06572986	1.4873441	302.08096	0	13.349762						630	12	5	NaN	NaN	NaN	0.03623	1	7771	7771		52.758	5.2767	1	197820			26037	4328	14972	15402	20764	20764					0.04232462619779653
TASEMILVL	9	Unmodified	_TASEMILVL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5383453845001	1	976.538345	975.531069	1.3469	0.0013153	-0.70178	-0.00068532	0.64507	0.00062993	976.5382284871034	32.007	0.28956	32.003	31.954	32.244	-0.0037575	219	106	1.4891195	0.062176824	1.4876001	302.44153	0	12.628174						689	13	5	NaN	NaN	NaN	0.03623	1	7617	7617		52.758	15.456	1	200430			26038	4328	14972	15402	20765	20765					0.04232462619779653
TASGLVFIL	9	Unmodified	_TASGLVFIL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5451453219001	1	920.545145	919.537869	1.5998	0.0014727	-1.6988	-0.0015638	-0.098989	-9.1124E-05	920.5437930402843	34.445	0.096516	34.445	34.421	34.517	0	294	52	1.4446791	0.03025794	1.4446791	293.66443	0	6.150635						129	5	3	NaN	NaN	NaN	0.078597	1	6412	6412		38.918	6.4651	1	12906			26039	664	14973	15403	20766	20766					0.07488143562670757
TASGLVFIL	9	Unmodified	_TASGLVFIL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5451453219001	1	920.545145	919.537869	1.1371	0.0010468	-0.64297	-0.00059188	0.49415	0.00045489	920.5448998870393	34.443	0.096428	34.443	34.395	34.491	-0.0006485	288	55	1.4482387	0.032036066	1.4467193	294.38797	0	6.512085						127	5	3	NaN	NaN	NaN	0.062072	1	6286	6286		41.785	15.67	1	11360			26040	664	14973	15403	20767	20767					0.07488143562670757
TASIVEQSL	9	Unmodified	_TASIVEQSL_					0	0	0		ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.5044027192001	1	947.504403	946.497126	1.8688	0.0017707	-0.50553	-0.00047899	1.3633	0.0012917	947.5039260274461	22.236	0.16881	22.236	22.187	22.356	0	336	73	1.419741	0.042783022	1.419741	288.47388	0	8.692993						295	8	4	NaN	NaN	NaN	1.7723E-07	1	6998	6998		134.97	55.774	1	50308			26041	4381	14974	15404	20768	20768					0.021737574523854164
TASIVEQSL	9	Unmodified	_TASIVEQSL_					0	0	0		ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	ENSG00000165169|ENST00000378578|DYNLT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.5044027192001	1	947.504403	946.497126	1.2304	0.0011658	0.53316	0.00050517	1.7636	0.001671	947.5050566305415	22.235	0.19283	22.222	22.173	22.366	-0.013731	336	70	1.419741	0.04099822	1.4182216	288.47388	0	8.330322						284	9	4	NaN	NaN	NaN	0.0098181	1	6867	6867		92.758	26.277	1	49573			26042	4381	14974	15404	20769	20769					0.021737574523854164
TASPLEHIL	9	Unmodified	_TASPLEHIL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.7741995215501	2	490.7742	979.533846	1.5437	0.00075762	-1.2704	-0.00062348	0.27331	0.00013413	490.7734146259944	24.164	0.21723	24.164	24.068	24.285	0	1311	55	0.83019954	0.033225775	0.83019954	337.20456	0	13.495392						275	10	4	NaN	NaN	NaN	0.023074	1	7872	7872		68.108	29.19	1	41601			26043	1307	14975	15405	20770	20770					0.043260540689630034
TASPVAVSL	9	Unmodified	_TASPVAVSL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4774596872002	1	844.47746	843.470183	1.5158	0.0012801	-0.2658	-0.00022446	1.25	0.0010556	844.4769438270079	23.995	0.07238	23.995	23.971	24.044	0	474	49	1.3375392	0.028658986	1.3375392	272.24713	0	5.8333435						88	4	2	NaN	NaN	NaN	0.04947	1	5314	5314		47.136	9.8334	1	11349			26044	886	14976	15406	20771	20771					0.04218693631867154
TASPVAVSL	9	Unmodified	_TASPVAVSL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4774596872002	1	844.47746	843.470183	1.235	0.001043	-0.21688	-0.00018315	1.0181	0.0008598	844.4772719522757	24.019	0.072351	24.006	23.982	24.055	-0.012747	471	52	1.3393306	0.030451775	1.3378111	272.61172	0	6.198242						93	4	2	NaN	NaN	NaN	0.025843	1	5181	5181		64.55	14.589	1	10837			26045	886	14976	15406	20772	20772					0.04218693631867154
TASQLEEVF	9	Unmodified	_TASQLEEVF_					0	0	0		nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.4993173413001	1	1023.49932	1022.49204	2.6982	0.0027616	-2.0507	-0.0020988	0.64755	0.00066277	1023.4971761082328	25.708	0.096481	25.708	25.684	25.781	0	228	106	1.4837929	0.06220317	1.4837929	301.16684	0	12.625427						213	5	3	NaN	NaN	NaN	0.030545	1	9458	9458		58.398	23.101	1	21905			26046	5720	14977	15407	20773	20773					-0.018305464102354563
TASQLEEVF	9	Unmodified	_TASQLEEVF_					0	0	0		nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.4993173413001	1	1023.49932	1022.49204	2.2128	0.0022647	-0.86078	-0.00088101	1.352	0.0013837	1023.4989672226577	25.708	0.14478	25.696	25.672	25.817	-0.0116	231	55	1.4820169	0.03196478	1.4804975	300.8064	0	6.487915						196	7	3	NaN	NaN	NaN	0.090258	1	9267	9267		37.231	14.113	1	19249			26047	5720	14977	15407	20774	20774					-0.018305464102354563
TASWPDWAL	9	Unmodified	_TASWPDWAL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.4941723839	1	1046.49417	1045.4869	1.8306	0.0019157	0.0051114	5.3491E-06	1.8357	0.0019211	1046.4939697629884	31.983	0.3861	31.983	31.911	32.297	0	234	121	1.4802408	0.07100272	1.4802408	300.35794	0	14.407257						957	17	4	NaN	NaN	NaN	0.0072287	1	10435	10435		98.041	58.582	1	211750			26048	3765	14978	15408	20775	20775					-0.03402805482187432
TASWPDWAL	9	Unmodified	_TASWPDWAL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.4941723839	1	1046.49417	1045.4869	1.1951	0.0012507	-0.13945	-0.00014593	1.0557	0.0011048	1046.4938344327288	32.007	0.36197	32.003	31.906	32.268	-0.0037575	231	109	1.4820169	0.06390917	1.4804975	300.71832	0	12.967926						825	16	3	NaN	NaN	NaN	0.011942	1	10225	10225		87.021	52.582	1	206980			26049	3765	14978	15408	20776	20776					-0.03402805482187432
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	464.24834891180006	2	464.248349	926.482145	1.4553	0.00067561	-1.8476	-0.00085775	-0.39232	-0.00018213	464.24755095861605	14.189	0.36015	14.189	14.093	14.453	0	1359	79	0.8006399	0.048086345	0.8006399	325.45596	0	19.546844						620	16	4	NaN	NaN	NaN	0.042816	1	6521	6521		49.961	25	1	163410			26050	308	14979	15409	20777	20777					0.015963103750550545
TATATNHVL	9	Unmodified	_TATATNHVL_					0	0	0		RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant;ENSG00000004700|ENST00000444129|RECQL	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.24834891180006	2	464.248349	926.482145	0.8819	0.00040942	0.42728	0.00019836	1.3092	0.00060778	464.2483759680428	14.189	0.43122	14.177	14.058	14.489	-0.011219	1356	73	0.8024889	0.0443874	0.8009695	326.20755	0	18.043243						664	19	4	NaN	NaN	NaN	0.054111	1	6392	6392		45.165	24.609	1	164660			26051	308	14979	15409	20778	20778					0.015963103750550545
TATEVDIKM	9	Unmodified	_TATEVDIKM_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.25752500209995	2	504.257525	1006.5005	1.6634	0.00083878	2.5318	0.0012767	4.1952	0.0021154	504.2593529604498	19.228	0.096027	19.228	19.204	19.3	0	1335	46	0.8154261	0.027710617	0.8154261	331.08112	0	11.251129						67	5	2	NaN	NaN	NaN	0.25548	1	8839	8839		21.771	8.308	1	5521.5			26052	5077	14980	15410	20779	20779					-0.002493157652679656
TATGAWNWLID	11	Unmodified	_TATGAWNWLID_					0	0	0		nc|ENSG00000205423|Q8N9A8-2|CNEP1R1;ENSG00000205423|ENST00000427478|CNEP1R1	nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.54002222683334	3	416.540022	1246.59824	1.57	0.00065395	7.0171	0.0029229	8.587	0.0035768	416.5441191620934	36.157	0.07238	36.157	36.133	36.205	0	1467	22	0.7339432	0.012993455	0.7339432	445.8289	0	7.892761						41	4	2	NaN	NaN	NaN	0.75376	1	17682	17682		1.5256	0.15593	1	2432.8			26053	5927	14981	15411	20780	20780					-0.015197908449181341
TATHAGSA	8	Unmodified	_TATHAGSA_					0	0	0			REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3369434604001	1	715.336943	714.329667	1.0142	0.00072552	-8.8841	-0.0063551	-7.8698	-0.0056296	715.330732880243	39.692	0.14469	39.697	39.673	39.818	0.0053368	687	97	1.2098682	0.05780387	1.2083488	246.97328	0	11.799637						277	7	2	NaN	NaN	NaN	0.8439	1	3432	3432		3.1533	1.7138	1	47532	+		26054	13651	14982	15412	20781	20781					-0.03892465301703396
TATHAGSA	8	Unmodified						0	0	0			REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.336943	714.329667	1.0142	0.00072552	-8.8841	-0.0063551	-7.8698	-0.0056296	715.330732880243	39.692	0.14469	39.697	39.673	39.818	0.0053368	687	97	1.2098682	0.05780387	1.2083488	246.97328		11.799637	0.0016062	-7.184E-05	0.00014284	NaN	3.1533	277	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47532	+		26055	13651	14982	15412							-0.03892465301703396
TATKIEITM	9	Unmodified	_TATKIEITM_					0	0	0		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.27571775524996	2	504.275718	1006.53688	1.5229	0.00076799	-5.1646	-0.0026044	-3.6416	-0.0018364	504.2739162833385	20.477	0.0721	20.477	20.405	20.477	0	1311	61	0.83019954	0.0369215	0.83019954	337.0793	0	14.990936						155	4	5	NaN	NaN	NaN	0.064504	1	8845	8845		40.957	10.347	1	60528			26056	1755	14983	15413	20782	20782					0.03387561131444272
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(75)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2731750663	2	512.273175	1022.5318	2.2358	0.0011453	-2.5518	-0.0013072	-0.316	-0.00016188	512.2724068517272	16.254	0.19207	16.254	16.182	16.374	0	1314	49	0.8283535	0.0295372	0.8283535	336.25882	0	11.990234						371	9	5	NaN	NaN	NaN	0.017791	1	9461	9461		74.794	43.119	1	111390			26057	1755	14983	15414	20783	20783		197			0.021432572688240725
TATKIEITM	9	Oxidation (M)	_TATKIEITM(Oxidation (M))_		TATKIEITM(1)		TATKIEITM(75)	0	0	1		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2731750663	2	512.273175	1022.5318	1.9412	0.00099443	-2.4364	-0.0012481	-0.49521	-0.00025368	512.2721095676758	16.251	0.21575	16.238	16.19	16.406	-0.012995	1314	61	0.8283535	0.036917448	0.8268341	336.25882	0	14.986145						403	10	4	NaN	NaN	NaN	0.017791	1	9274	9274		74.794	33.837	1	121400			26058	1755	14983	15414	20784	20784		197			0.021432572688240725
TATLHEPIM	9	Unmodified	_TATLHEPIM_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.76023486655004	2	506.760235	1011.50592	1.8577	0.00094139	-2.3793	-0.0012058	-0.52167	-0.00026436	506.7589447960904	19.492	0.192	19.492	19.42	19.612	0	1281	79	0.84864825	0.04797715	0.84864825	344.54706	0	19.478485						265	9	4	NaN	NaN	NaN	0.094712	1	9041	9041		36.586	5.0254	1	36191			26059	4386	14984	15415	20785	20785					0.0006240781721089661
TATLHEPIM	9	Unmodified	_TATLHEPIM_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.76023486655004	2	506.760235	1011.50592	1.3018	0.0006597	-0.80686	-0.00040888	0.49494	0.00025082	506.75979806218095	19.515	0.14445	19.5	19.452	19.597	-0.014141	1284	76	0.8468043	0.046134353	0.8452849	343.7984	0	18.730316						216	7	2	NaN	NaN	NaN	0.10956	1	8867	8867		34.439	11.104	1	34367			26060	4386	14984	15415	20786	20786					0.0006240781721089661
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(67)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7576921776001	2	514.757692	1027.50083	2.2046	0.0011348	-1.8823	-0.00096895	0.32227	0.00016589	514.7569253776248	16.47	0.16779	16.47	16.398	16.566	0	1284	70	0.8468043	0.042434454	0.8468043	343.7266	0	17.224579						351	8	3	NaN	NaN	NaN	0.023828	1	9660	9660		67.154	42.193	1	61618			26061	4386	14984	15416	20787	20787		470			-0.011818960453865657
TATLHEPIM	9	Oxidation (M)	_TATLHEPIM(Oxidation (M))_		TATLHEPIM(1)		TATLHEPIM(98)	0	0	1		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7576921776001	2	514.757692	1027.50083	1.7524	0.00090207	-1.2922	-0.00066515	0.46025	0.00023692	514.7574046377983	16.467	0.21577	16.454	16.382	16.598	-0.012995	1287	73	0.8449601	0.04428184	0.84344065	342.978	0	17.974457						375	10	3	NaN	NaN	NaN	0.0072287	1	9471	9471		98.041	48.208	1	63466			26062	4386	14984	15416	20788	20788		470			-0.011818960453865657
TATLIEDIL	9	Unmodified	_TATLIEDIL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5561039387	1	988.556104	987.548827	1.811	0.0017903	-0.023701	-2.343E-05	1.7873	0.0017669	988.555559346175	32.925	0.21725	32.925	32.828	33.045	0	216	121	1.4908947	0.07103288	1.4908947	302.75073	0	14.424408						385	10	2	NaN	NaN	NaN	0.03623	1	8140	8140		52.758	8.4559	1	136970			26063	1292	14985	15417	20789	20789					0.0545550114627531
TATLIEDIL	9	Unmodified	_TATLIEDIL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5561039387	1	988.556104	987.548827	1.5341	0.0015166	-0.95114	-0.00094026	0.58297	0.0005763	988.554990805605	32.924	0.14468	32.921	32.897	33.042	-0.0024757	213	139	1.4926696	0.081679225	1.4911501	303.11118	0	16.586304						340	7	2	NaN	NaN	NaN	0.01047	1	7976	7976		91.429	17.097	1	119680			26064	1292	14985	15417	20790	20790					0.0545550114627531
TATTSQPVL	9	Unmodified	_TATTSQPVL_					0	0	0		VPS53-ABR|1|fusion;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion	VPS53-ABR|1|fusion	VPS53-ABR|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.4938380329	1	917.493838	916.486562	2.0869	0.0019147	-1.0326	-0.00094741	1.0543	0.00096731	917.4935348742463	18.796	0.096027	18.796	18.772	18.868	0	369	46	1.4001206	0.026769161	1.4001206	284.62085	0	5.441742						139	5	3	NaN	NaN	NaN	0.03618	1	6353	6353		52.78	22.17	1	11283			26065	14023	14986	15418	20791	20791					0.024977747979505693
TATTSQPVL	9	Unmodified						0	0	0		VPS53-ABR|1|fusion;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion	VPS53-ABR|1|fusion	VPS53-ABR|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	917.493838	916.486562	1.7953	0.0016472	0.83659	0.00076757	2.6319	0.0024148	917.4944758520022	18.818	0.16815	18.804	18.756	18.924	-0.014059	369	43	1.4001206	0.02498591	1.3986012	284.62085		5.0792236	0.0036698	0.00060801	-0.00075972	NaN	52.78	134	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12270			26066	14023	14986	15418							0.024977747979505693
TATTVTGV	8	Unmodified	_TATTVTGV_					0	0	0			REV__ENST00000588559.5_1_19:55705613-55720813:-|nuORF	REV__ENST00000588559.5_1_19:55705613-55720813:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	749.4039603931002	1	749.40396	748.396684	-0.22638	-0.00016965	6.6506	0.004984	6.4243	0.0048144	749.4088606143762	55.987	0.12004	55.986	55.962	56.082	-0.00059128	600	67	1.2621325	0.039578915	1.2606131	257.42126	0	8.072403						158	6	3	NaN	NaN	NaN	0.84727	1	3953	3953		1.2418	0	1	18281	+		26067	8647	14987	15419	20792	20792					0.012421451893942503
TATTVTGV	8	Unmodified						0	0	0			REV__ENST00000588559.5_1_19:55705613-55720813:-|nuORF	REV__ENST00000588559.5_1_19:55705613-55720813:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	749.40396	748.396684	-0.22638	-0.00016965	6.6506	0.004984	6.4243	0.0048144	749.4088606143762	55.987	0.12004	55.986	55.962	56.082	-0.00059128	600	67	1.2621325	0.039578915	1.2606131	257.42126		8.072403	-0.0013761	0.00090796	0.0010399	NaN	1.2418	158	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18281	+		26068	8647	14987	15419							0.012421451893942503
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5557100082002	1	962.55571	961.548434	1.122	0.00108	-1.9297	-0.0018575	-0.80773	-0.00077749	962.5539099573895	34.203	0.14471	34.203	34.155	34.3	0	246	58	1.4731345	0.033763885	1.4731345	299.25558	0	6.8588867						132	7	2	NaN	NaN	NaN	0.025843	1	7379	7379		64.55	0	1	14185			26069	7434	14988	15420	20793	20793					0.06612126217100922
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5557100082002	1	962.55571	961.548434	1.069	0.001029	0.88466	0.00085154	1.9537	0.0018805	962.5555340417836	35.048	0.24131	35.048	34.999	35.241	0	240	160	1.4766881	0.09429371	1.4766881	299.97745	0	19.154999						779	11	4	NaN	NaN	NaN	0.023074	1	7380	7380		68.108	0	1	200890			26070	7434	14988	15420	20794	20794					0.06612126217100922
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5557100082002	1	962.55571	961.548434	1.1679	0.0011242	-1.3198	-0.0012704	-0.15191	-0.00014622	962.5537578366688	34.202	0.12065	34.201	34.177	34.298	-0.0012474	240	55	1.4766881	0.031981707	1.4751687	299.97745	0	6.496826						147	6	3	NaN	NaN	NaN	0.062072	1	7225	7225		41.785	0	1	15032			26071	7434	14988	15420	20795	20795					0.06612126217100922
TAVAVFELL	9	Unmodified	_TAVAVFELL_					0	0	0		ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	ENST00000527634.5_2_11:66512258-66526561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.5557100082002	1	962.55571	961.548434	1.4643	0.0014095	0.63755	0.00061368	2.1018	0.0020231	962.5551809523507	35.046	0.26548	35.046	34.998	35.263	-4.5776E-05	237	121	1.4784646	0.07110822	1.4769452	300.33832	0	14.445099						798	12	4	NaN	NaN	NaN	0.028349	1	7227	7227		61.271	0	1	203000			26072	7434	14988	15420	20796	20796					0.06612126217100922
TAVAVVEIL	9	Unmodified	_TAVAVVEIL_					0	0	0		ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5557100082002	1	914.55571	913.548434	1.8296	0.0016733	-0.31913	-0.00029186	1.5105	0.0013814	914.5560006687676	30.294	0.12065	30.294	30.27	30.391	0	315	94	1.4322147	0.055252552	1.4322147	291.15887	0	11.232452						221	6	3	NaN	NaN	NaN	0.042816	1	6304	6304		49.961	7.6437	1	40960			26073	651	14989	15421	20797	20797					0.08820126217108282
TAVAVVEIL	9	Unmodified	_TAVAVVEIL_					0	0	0		ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	ENST00000542274.5_1_16:68679206-68732300:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5557100082002	1	914.55571	913.548434	1.204	0.0011011	0.60486	0.00055318	1.8088	0.0016543	914.556688798029	30.293	0.12064	30.287	30.238	30.359	-0.0064106	312	85	1.433996	0.049892306	1.4324765	291.521	0	10.142731						212	6	3	NaN	NaN	NaN	0.094712	1	6183	6183		36.586	6.9881	1	37879			26074	651	14989	15421	20798	20798					0.08820126217108282
TAVEEPDSL	9	Unmodified	_TAVEEPDSL_					0	0	0		BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.4520327977001	1	960.452033	959.444756	1.6123	0.0015485	1.6957	0.0016287	3.308	0.0031772	960.4530961090435	19.756	0.14411	19.756	19.732	19.876	0	333	67	1.4215236	0.039222002	1.4215236	288.78015	0	7.967865						128	7	2	NaN	NaN	NaN	0.030669	1	7310	7310		58.235	13.597	1	10798			26075	60	14990	15422	20799	20799					-0.03658825681225153
TAVEEPDSL	9	Unmodified	_TAVEEPDSL_					0	0	0		BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.4520327977001	1	960.452033	959.444756	1.7103	0.0016426	0.29835	0.00028655	2.0086	0.0019292	960.452487314824	19.779	0.096292	19.765	19.717	19.813	-0.014141	327	61	1.425088	0.035656333	1.4235686	289.50427	0	7.2435303						118	5	2	NaN	NaN	NaN	0.019103	1	7169	7169		73.133	5.9787	1	9984			26076	60	14990	15422	20800	20800					-0.03658825681225153
TAVELLDVF	9	Unmodified	_TAVELLDVF_					0	0	0		GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5455392524001	1	1006.54554	1005.53826	1.535	0.0015451	-0.32146	-0.00032356	1.2136	0.0012215	1006.5450449650814	34.276	0.12057	34.276	34.252	34.372	0	216	67	1.4908947	0.03904736	1.4908947	302.67618	0	7.927246						196	6	2	NaN	NaN	NaN	0.028349	1	8809	8809		61.271	29.71	1	46474			26077	4575	14991	15423	20801	20801					0.03571518491855841
TAVELLDVF	9	Unmodified	_TAVELLDVF_					0	0	0		GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5455392524001	1	1006.54554	1005.53826	1.3437	0.0013525	-0.28793	-0.00028982	1.0558	0.0010627	1006.5457087024224	34.275	0.28922	34.274	34.225	34.514	-0.0012474	213	64	1.4926696	0.037270427	1.4911501	303.03653	0	7.566498						227	13	2	NaN	NaN	NaN	0.04947	1	8640	8640		47.136	5.3513	1	48111			26078	4575	14991	15423	20802	20802					0.03571518491855841
TAVEVAAESL	10	Unmodified	_TAVEVAAESL_					0	0	0		ENST00000529239.1_1_8:61851633-61851774:-|nuORF	ENST00000529239.1_1_8:61851633-61851774:-|nuORF	ENST00000529239.1_1_8:61851633-61851774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.26112193604996	2	495.261122	988.507691	1.9081	0.000945	-1.3365	-0.00066191	0.5716	0.00028309	495.2603786379183	16.35	0.28782	16.35	16.254	16.542	0	1323	67	0.8228144	0.040635645	0.8228144	334.16293	0	16.503021						375	13	3	NaN	NaN	NaN	0.33935	1	8164	8164		26.115	5.6016	1	58553			26079	7443	14992	15424	20803	20803					0.012977401068042127
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.76617752420003	2	440.766178	879.517802	0.88505	0.0003901	0.019641	8.6573E-06	0.90469	0.00039876	440.7663320600655	20.67	0.14459	20.67	20.622	20.766	0	1350	40	0.80618626	0.02403146	0.80618626	327.96606	0	9.776276						154	7	3	NaN	NaN	NaN	0.042649	1	5797	5797		50.033	8.248	1	29273			26080	4223	14993	15425	20804	20804					0.07322392622711504
TAVGIFSVL	9	Unmodified	_TAVGIFSVL_					0	0	0		ENST00000552099.5_1_12:49167650-49168524:-|nuORF;ENST00000547260.5_1_12:49168067-49168277:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.5294952577002	1	906.529495	905.522219	1.6093	0.0014588	0.7968	0.00072232	2.4061	0.0021812	906.529447649864	34.3	0.12057	34.3	34.252	34.372	0	318	64	1.4304334	0.037417173	1.4304334	290.835	0	7.6076355						182	6	3	NaN	NaN	NaN	0.025843	1	6177	6177		64.55	14.717	1	25453			26081	7553	14994	15426	20805	20805					0.06567857045627079
TAVGIFSVL	9	Unmodified	_TAVGIFSVL_					0	0	0		ENST00000552099.5_1_12:49167650-49168524:-|nuORF;ENST00000547260.5_1_12:49168067-49168277:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	ENST00000552099.5_1_12:49167650-49168524:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.5294952577002	1	906.529495	905.522219	1.6724	0.0015161	0.074533	6.7566E-05	1.747	0.0015837	906.5291386249226	34.275	0.12046	34.274	34.249	34.37	-0.0012474	315	55	1.4322147	0.032063365	1.4306953	291.19717	0	6.519104						176	6	3	NaN	NaN	NaN	0.062072	1	6056	6056		41.785	16.823	1	23403			26082	7553	14994	15426	20806	20806					0.06567857045627079
TAVGSGVVTL	10	Unmodified	_TAVGSGVVTL_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1;ENSG00000168575|ENST00000520262|SLC20A2	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.514573475	1	903.514573	902.507297	1.8868	0.0017047	-0.45762	-0.00041346	1.4291	0.0012913	903.5141237351112	23.875	0.16883	23.875	23.851	24.019	0	357	100	1.407258	0.058867335	1.407258	286.1373	0	11.969482						253	8	3	NaN	NaN	NaN	0.00909	1	6128	6128		72.428	24.947	1	47841			26083	3466	14995	15427	20807	20807					0.052143651776077604
TAVGSGVVTL	10	Unmodified	_TAVGSGVVTL_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1;ENSG00000168575|ENST00000520262|SLC20A2	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	903.514573475	1	903.514573	902.507297	2.0057	0.0018122	-0.093138	-8.4152E-05	1.9126	0.0017281	903.5142190381595	23.899	0.14471	23.886	23.837	23.982	-0.01305	357	94	1.407258	0.055281997	1.4057386	286.1373	0	11.240448						242	7	3	NaN	NaN	NaN	0.14619	1	6002	6002		40.154	11.487	1	43163			26084	3466	14995	15427	20808	20808					0.052143651776077604
TAVHDAIL	8	Unmodified	_TAVHDAIL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.462143974	1	839.462144	838.454868	2.1696	0.0018213	-0.28782	-0.00024161	1.8818	0.0015797	839.461730184334	18.029	0.14388	18.029	18.005	18.149	0	423	55	1.3679651	0.032189846	1.3679651	278.46683	0	6.5526733						163	7	2	NaN	NaN	NaN	0.49126	1	5251	5251		31.561	4.8295	1	17005			26085	4814	14996	15428	20809	20809					0.029178268346640834
TAVHDAIL	8	Unmodified	_TAVHDAIL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.2347102203	2	420.23471	838.454868	2.1002	0.00088258	-1.1948	-0.00050208	0.90545	0.0003805	420.2342728860769	18.074	0.26394	18.06	18.012	18.276	-0.013786	1386	94	0.78399014	0.057405293	0.7824707	319.1763	0	23.370697						465	12	4	NaN	NaN	NaN	0.14214	1	5122	5122		55.947	14.487	1	246420			26086	4814	14996	15428	20810	20810					0.029178268346640834
TAVHDAIL	8	Unmodified	_TAVHDAIL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.462143974	1	839.462144	838.454868	1.7476	0.0014671	0.04131	3.4678E-05	1.7889	0.0015017	839.4615169576002	18.074	0.16804	18.06	18.012	18.18	-0.013786	423	58	1.3679651	0.033976436	1.3664457	278.46683	0	6.916321						165	8	3	NaN	NaN	NaN	0.57691	1	5123	5123		26.732	2.8811	1	16775			26087	4814	14996	15428	20811	20811					0.029178268346640834
TAVHDAIL	8	Unmodified						0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	420.23471	838.454868	2.3589	0.00099128	-1.6209	-0.00068115	0.73797	0.00031012	420.2341722630715	18.029	0.33572	18.029	17.981	18.316	0	1383	61	0.7858409	0.037017584	0.7858409	319.92978		15.070526	-0.015586	-0.00013445	0.0016851	NaN	55.947	457	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235990			26088	4814	14996	15428							0.029178268346640834
TAVITEFAL	9	Unmodified	_TAVITEFAL_					0	0	0		ENST00000301490.8_2_11:67395419-67395788:-|nuORF;ENSG00000167799|ENST00000376693|NUDT8	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5349745661	1	964.534975	963.527698	1.358	0.0013099	-0.8481	-0.00081803	0.50993	0.00049184	964.5342238538647	30.535	0.1207	30.535	30.511	30.632	0	273	82	1.4571344	0.048026085	1.4571344	295.99667	0	9.755829						177	6	2	NaN	NaN	NaN	0.032764	1	7446	7446		55.494	8.3578	1	32036			26089	4571	14997	15429	20812	20812					0.04447535837425676
TAVITEFAL	9	Unmodified	_TAVITEFAL_					0	0	0		ENST00000301490.8_2_11:67395419-67395788:-|nuORF;ENSG00000167799|ENST00000376693|NUDT8	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	ENST00000301490.8_2_11:67395419-67395788:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5349745661	1	964.534975	963.527698	1.014	0.00097806	-1.3271	-0.00128	-0.31303	-0.00030193	964.5339303751906	30.534	0.12062	30.529	30.48	30.601	-0.0057545	270	82	1.458913	0.048026085	1.4573935	296.35797	0	9.755859						198	6	2	NaN	NaN	NaN	0.01047	1	7290	7290		91.429	26.879	1	33773			26090	4571	14997	15429	20813	20813					0.04447535837425676
TAVIWEPVL	9	Unmodified	_TAVIWEPVL_					0	0	0		ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000575714.5_1_16:4407825-4408182:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7	ENSG00000262246|ENST00000251166|CORO7	ENSG00000262246|ENST00000251166|CORO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.5822591097	1	1027.58226	1026.57498	1.6858	0.0017323	0.38188	0.00039242	2.0677	0.0021248	1027.5822947758174	32.514	0.16892	32.514	32.49	32.659	0	159	88	1.5245869	0.051386952	1.5245869	309.43045	0	10.429474						261	8	3	NaN	NaN	NaN	0.025843	1	9638	9638		64.55	30.096	1	36457			26091	6151	14998	15430	20814	20814					0.0627581510843811
TAVIWEPVL	9	Unmodified	_TAVIWEPVL_					0	0	0		ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7;ENST00000575714.5_1_16:4407825-4408182:-|nuORF;ENST00000574849.1_1_16:4407825-4408472:-|nuORF;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7	ENSG00000262246|ENST00000251166|CORO7	ENSG00000262246|ENST00000251166|CORO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1027.5822591097	1	1027.58226	1026.57498	0.98298	0.0010101	-2.0444	-0.0021008	-1.0615	-0.0010907	1027.5796267270582	32.513	0.12066	32.51	32.462	32.583	-0.0031052	171	103	1.5174994	0.06023085	1.51598	307.992	0	12.224457						294	6	3	NaN	NaN	NaN	0.055351	1	9448	9448		44.638	10.2	1	39179			26092	6151	14998	15430	20815	20815					0.0627581510843811
TAVKELEAL	9	Unmodified	_TAVKELEAL_					0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.28185737815005	2	487.281857	972.549162	1.4561	0.00070954	-1.9862	-0.00096783	-0.53007	-0.0002583	487.2810829363946	20.597	0.1445	20.597	20.549	20.694	0	1278	82	0.85049206	0.049819708	0.85049206	345.4812	0	20.237457						138	7	3	NaN	NaN	NaN	0.052553	1	7687	7687		45.827	12.401	1	19891			26093	2	14999	15431	20816	20816					0.06178920866148019
TAVKELEAL	9	Unmodified						0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	487.281857	972.549162	1.1417	0.00055631	-1.2887	-0.00062796	-0.14703	-7.1645E-05	487.2813492366479	20.622	0.14465	20.608	20.559	20.704	-0.014088	1278	76	0.85049206	0.04611945	0.8489726	345.4812		18.734344	0.0051006	0.00040695	-0.00075972	NaN	45.827	165	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22030			26094	2	14999	15431							0.06178920866148019
TAVKNDYEM	9	Unmodified	_TAVKNDYEM_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7447817676	2	535.744782	1069.47501	2.0003	0.0010716	-1.6957	-0.00090845	0.3046	0.00016319	535.7436971455157	14.909	0.28827	14.909	14.861	15.15	0	1272	70	0.854179	0.042402327	0.854179	346.5401	0	17.202606						366	13	2	NaN	NaN	NaN	0.011693	1	11525	11525		87.778	48.319	1	162580			26095	2755	15000	15432	20817	20817					-0.056947902877027445
TAVKNDYEM	9	Unmodified	_TAVKNDYEM_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7447817676	2	535.744782	1069.47501	1.1017	0.00059024	-0.92415	-0.00049511	0.17757	9.513E-05	535.7444089621396	14.908	0.3364	14.896	14.824	15.16	-0.011738	1272	82	0.854179	0.049792826	0.8526596	346.5401	0	20.200928						659	15	5	NaN	NaN	NaN	0.026267	1	11243	11243		63.995	29.556	1	168130			26096	2755	15000	15432	20818	20818					-0.056947902877027445
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(93)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.74223907865	2	543.742239	1085.46993	1.4399	0.00078293	-1.8501	-0.001006	-0.41025	-0.00022307	543.7412332521826	12.46	0.52811	12.46	12.388	12.916	0	1281	76	0.84864825	0.04608953	0.84864825	344.23178	0	18.694977						797	23	4	NaN	NaN	NaN	0.0098181	1	12190	12190		92.758	50.44	1	251810			26097	2755	15000	15433	20819	20819		322			-0.06939094150334313
TAVKNDYEM	9	Oxidation (M)	_TAVKNDYEM(Oxidation (M))_		TAVKNDYEM(1)		TAVKNDYEM(81)	0	0	1		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.74223907865	2	543.742239	1085.46993	1.5263	0.00082992	-1.92	-0.001044	-0.39372	-0.00021408	543.7414624262051	12.462	0.43225	12.453	12.309	12.741	-0.0088415	1278	70	0.85049206	0.042402327	0.8489726	344.97964	0	17.199371						784	19	5	NaN	NaN	NaN	0.013959	1	11881	11881		80.901	44.666	1	233260			26098	2755	15000	15433	20820	20820		322			-0.06939094150334313
TAVPGPLG	8	Unmodified	_TAVPGPLG_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	711.4035664626001	1	711.403566	710.39629	1.4859	0.0010571	8.1405	0.0057912	9.6264	0.0068482	711.4090575267545	57.645	0.048008	57.645	57.621	57.669	0	531	37	1.3034686	0.021540165	1.3034686	266.10776	0	4.3974915						45	3	2	NaN	NaN	NaN	0.84651	1	3440	3440		1.6704	0	1	3168.1			26099	717	15001	15434	20821	20821					0.029507702601904384
TAVQVVADVL	10	Unmodified	_TAVQVVADVL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.79513192890005	2	507.795132	1013.57571	1.5813	0.00080297	-1.0437	-0.00052997	0.53764	0.00027301	507.79443936343455	28.87	0.096542	28.87	28.846	28.943	0	1314	37	0.8283535	0.0221529	0.8283535	336.29828	0	8.993713						83	5	2	NaN	NaN	NaN	0.52943	1	9135	9135		18.233	2.7708	1	11063			26100	5808	15002	15435	20822	20822					0.06946609757483202
TAVQVVADVL	10	Unmodified	_TAVQVVADVL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.79513192890005	2	507.795132	1013.57571	0.97523	0.00049522	-2.5915	-0.0013159	-1.6163	-0.00082073	507.7944911817188	28.894	0.12069	28.885	28.837	28.958	-0.0083485	1314	37	0.8283535	0.022150517	0.8268341	336.29828	0	8.992737						99	6	2	NaN	NaN	NaN	0.26393	1	8960	8960		30.035	12.066	1	13044			26101	5808	15002	15435	20823	20823					0.06946609757483202
TAVVMAEVL	9	Oxidation (M)	_TAVVM(Oxidation (M))AEVL_		TAVVM(1)AEVL		TAVVM(53)AEVL	0	0	1		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5070452561001	1	948.507045	947.499769	1.8594	0.0017637	-1.8864	-0.0017892	-0.026915	-2.5529E-05	948.5052739275224	23.706	0.1205	23.706	23.658	23.778	0	297	82	1.4428991	0.048087478	1.4428991	293.17487	0	9.770599						267	6	3	NaN	NaN	NaN	0.036546	1	7023	7023		52.624	13.706	1	34136			26102	1363	15003	15436	20824	20824		152			0.023918895856922973
TAVVMAEVL	9	Oxidation (M)	_TAVVM(Oxidation (M))AEVL_		TAVVM(1)AEVL		TAVVM(61)AEVL	0	0	1		nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	nc|ENSG00000102100|P78381-2|SLC35A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5070452561001	1	948.507045	947.499769	1.7248	0.001636	-1.2279	-0.0011647	0.49686	0.00047128	948.5065474446109	23.706	0.19274	23.693	23.645	23.837	-0.013048	300	67	1.4411188	0.03916776	1.4395994	292.81314	0	7.9582825						278	9	3	NaN	NaN	NaN	0.028349	1	6892	6892		61.271	11.438	1	35626			26103	1363	15003	15436	20825	20825		152			0.023918895856922973
TAYNLVHEL	9	Unmodified	_TAYNLVHEL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.27710635125	2	530.277106	1058.53966	1.9521	0.0010351	-1.5866	-0.00084136	0.36544	0.00019378	530.2764330777162	22.019	0.19287	22.019	21.97	22.163	0	1248	91	0.8689189	0.055232704	0.8689189	352.56638	0	22.410828						322	9	4	NaN	NaN	NaN	0.097143	1	11026	11026		36.235	11.673	1	62425			26104	4628	15004	15437	20826	20826					0.012731525806202626
TAYNLVHEL	9	Unmodified	_TAYNLVHEL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.27710635125	2	530.277106	1058.53966	0.86984	0.00046126	-0.88853	-0.00047117	-0.018689	-9.9103E-06	530.2769260454335	22.042	0.14449	22.029	21.981	22.125	-0.013731	1248	115	0.8689189	0.06999177	0.86739945	352.56638	0	28.399353						286	7	4	NaN	NaN	NaN	0.10945	1	10788	10788		34.454	17.596	1	57460			26105	4628	15004	15437	20827	20827					0.012731525806202626
TAYNLVHEL	9	Unmodified	_TAYNLVHEL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.5469362359	1	1059.54694	1058.53966	2.3086	0.0024461	-1.3559	-0.0014367	0.95266	0.0010094	1059.5444772318403	22.042	0.04813	22.029	22.005	22.053	-0.013731	138	34	1.5369828	0.019472957	1.5354633	311.82144	0	3.950653						41	3	2	NaN	NaN	NaN	0.1507	1	10789	10789		28.495	9.3317	1	2834.7			26106	4628	15004	15437	20828	20828					0.012731525806202626
TAYNLVHEL	9	Unmodified						0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1059.54694	1058.53966	2.228	0.0023607	-1.3657	-0.0014471	0.86226	0.0009136	1059.5457446718513	22.019	0.048193	22.019	22.019	22.067	0	144	43	1.533442	0.024787784	1.533442	311.1031		5.0289	-0.0050269	-5.3576E-06	-0.0010106	NaN	28.495	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3381.1			26107	4628	15004	15437							0.012731525806202626
TAYTSIMG	8	Unmodified	_TAYTSIMG_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.19947880695	2	422.199479	842.384405	0.70781	0.00029883	-2.9853	-0.0012604	-2.2775	-0.00096156	422.19822996508503	31.259	0.048222	31.259	31.211	31.259	0	1395	34	0.7784366	0.020365238	0.7784366	316.89157	0	8.290405						46	3	2	NaN	NaN	NaN	0.84692	1	5294	5294		1.4396	0	1	4989.8			26108	4303	15005	15438	20829	20829					-0.04309214545298801
TAYVGSAVM	9	Unmodified	_TAYVGSAVM_					0	0	0		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.433880313	1	898.43388	897.426604	1.6685	0.001499	0.023154	2.0802E-05	1.6916	0.0015198	898.4343672631081	21.272	0.21661	21.272	21.224	21.44	0	342	64	1.4161754	0.03744507	1.4161754	287.97495	0	7.6143494						325	10	4	NaN	NaN	NaN	0.036546	1	6020	6020		52.624	16.038	1	57120			26109	2038	15006	15439	20830	20830					-0.02621239136931308
TAYVGSAVM	9	Unmodified	_TAYVGSAVM_					0	0	0		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.433880313	1	898.43388	897.426604	1.4919	0.0013404	-0.95725	-0.00086002	0.53468	0.00048037	898.4331847734118	21.272	0.16831	21.258	21.234	21.402	-0.014004	339	73	1.4179583	0.04279661	1.4164388	288.3375	0	8.702576						335	8	4	NaN	NaN	NaN	0.030391	1	5907	5907		58.599	16.815	1	60992			26110	2038	15006	15439	20831	20831					-0.02621239136931308
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(83)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.4287949351001	1	914.428795	913.421518	2.1524	0.0019682	-0.75869	-0.00069377	1.3937	0.0012744	914.4284507612234	17.285	0.21576	17.285	17.237	17.453	0	333	91	1.4215236	0.053495765	1.4215236	288.98602	0	10.875336						460	10	4	NaN	NaN	NaN	0.013281	1	6294	6294		82.96	27.467	1	78491			26111	2038	15006	15440	20832	20832		232			-0.03865542999540139
TAYVGSAVM	9	Oxidation (M)	_TAYVGSAVM(Oxidation (M))_		TAYVGSAVM(1)		TAYVGSAVM(73)	0	0	1		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.4287949351001	1	914.428795	913.421518	2.0232	0.0018501	-0.45388	-0.00041504	1.5693	0.0014351	914.4284671216712	17.282	0.23998	17.268	17.22	17.46	-0.013567	330	100	1.4233059	0.05885482	1.4217864	289.34836	0	11.964783						417	11	3	NaN	NaN	NaN	0.019103	1	6173	6173		73.133	33.674	1	81240			26112	2038	15006	15440	20833	20833		232			-0.03865542999540139
TAYWKELSL	9	Unmodified	_TAYWKELSL_					0	0	0		ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7951319289001	2	555.795132	1109.57571	1.7167	0.00095411	0.10433	5.7988E-05	1.821	0.0010121	555.7948180649473	25.346	0.16889	25.346	25.298	25.467	0	1185	76	0.90755045	0.045965135	0.90755045	368.02362	0	18.639465						236	8	3	NaN	NaN	NaN	0.040769	1	13263	13263		50.831	23.535	1	80288			26113	4497	15007	15441	20834	20834					0.0253060975749122
TAYWKELSL	9	Unmodified	_TAYWKELSL_					0	0	0		ENST00000579880.5_1_17:8339285-8348278:+|nuORF;ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	ENST00000579880.5_1_17:8339285-8348278:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7951319289001	2	555.795132	1109.57571	1.8842	0.0010472	0.62476	0.00034724	2.5089	0.0013944	555.7952529346517	25.346	0.21709	25.334	25.238	25.455	-0.012011	1188	82	0.90571284	0.049642324	0.9041934	367.27844	0	20.130646						377	10	4	NaN	NaN	NaN	0.034172	1	12886	12886		53.652	20.874	1	88107			26114	4497	15007	15441	20835	20835					0.0253060975749122
TAYYNDPAF	9	Unmodified	_TAYYNDPAF_					0	0	0		ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.4574525265998	1	1061.45745	1060.45018	2.1929	0.0023277	-1.0021	-0.0010637	1.1909	0.001264	1061.4570688383174	22.887	0.16866	22.887	22.863	23.031	0	186	64	1.5086359	0.037234902	1.5086359	306.06335	0	7.5539856						199	8	3	NaN	NaN	NaN	0.010878	1	11098	11098		90.252	54.955	1	22545			26115	5496	15008	15442	20836	20836					-0.0776310209876101
TAYYNDPAF	9	Unmodified	_TAYYNDPAF_					0	0	0		ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	ENSG00000187118|ENST00000466830|CMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4574525265998	1	1061.45745	1060.45018	1.5615	0.0016575	-0.24476	-0.0002598	1.3168	0.0013977	1061.4575119667495	22.91	0.14472	22.896	22.848	22.993	-0.01354	186	67	1.5086359	0.039018273	1.5071164	306.06335	0	7.915802						208	7	3	NaN	NaN	NaN	0.013959	1	10857	10857		80.901	48.448	1	22087			26116	5496	15008	15442	20837	20837					-0.0776310209876101
TCKSNWHKGW	10	Unmodified	_TCKSNWHKGW_					0	0	0		chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3;chr11:72114925-72115035|320|21.13|0.08|8.07|+|ENST00000622388|FOLR3,FOLR3;ENSG00000110203|ENST00000611028|FOLR3;ENSG00000110195|ENST00000393676|FOLR1	chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3	chr11:72115185-72135947|336|25.76|0.25|6.69|+|ENST00000622388|FOLR3,FOLR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.79293197845	2	623.792932	1245.57131	1.9984	0.0012466	2.7809	0.0017347	4.7793	0.0029813	624.2956942151143	23.055	0.24084	23.055	22.935	23.176	0	1176	58	0.9130621	0.034903347	0.9130621	369.76227	0	14.134796						309	11	3	NaN	NaN	NaN	0.38071	1	17648	17648		24.4	3.8869	1	54302			26117	120	15009	15443	20838	20838					-0.04165177937079534
TCVREWAPNFK	11	Unmodified	_TCVREWAPNFK_					0	0	0			REV__ENSG00000168612|ENST00000372523|ZSWIM1	REV__ENSG00000168612|ENST00000372523|ZSWIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.8922900176333	3	450.89229	1349.65504	1.4654	0.00066074	-11.386	-0.0051341	-9.9211	-0.0044733	450.8874595827516	18.844	0.14404	18.844	18.796	18.94	0	1446	43	0.7469324	0.025962949	0.7469324	453.34006	0	15.757843						116	7	3	NaN	NaN	NaN	0.70255	1	19540	19540		7.2894	2.0047	1	10189	+		26118	10520	15010	15444	20839	20839					-0.005800665600645516
TCVSYPFDEF	10	Unmodified	_TCVSYPFDEF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.2524396242001	2	604.25244	1206.49033	1.2811	0.00077414	-8.113	-0.0049023	-6.8318	-0.0041281	604.2478469572542	27.712	0.072409	27.712	27.712	27.784	0	1188	52	0.90571284	0.031242788	0.90571284	366.9163	0	12.65686						124	4	4	NaN	NaN	NaN	0.73444	1	16633	16633		5.6942	1.2811	1	12195			26119	5926	15011	15445	20840	20840					-0.10465923490482965
TDAALPCV	8	Unmodified	_TDAALPCV_					0	0	0			REV__ENST00000254958.9_1_20:10619810-10620026:-|nuORF	REV__ENST00000254958.9_1_20:10619810-10620026:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	789.381116461	1	789.381116	788.37384	1.4654	0.0011568	1.3467	0.0010631	2.8121	0.0022199	789.3823900255902	36.902	0.12012	36.904	36.856	36.976	0.0022469	498	43	1.3232021	0.02510345	1.3216827	269.63052	0	5.1153564						114	6	2	NaN	NaN	NaN	0.84207	1	4513	4513		3.5732	0	1	10365	+		26120	11518	15012	15446	20841	20841					-0.02881197199747021
TDCSNFFPRI	10	Unmodified	_TDCSNFFPRI_					0	0	0			REV__ENSG00000107742|ENST00000373109|SPOCK2	REV__ENSG00000107742|ENST00000373109|SPOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.2793230767	2	600.279323	1198.54409	0.8765	0.00052614	-5.3557	-0.0032149	-4.4792	-0.0026887	600.2765123907486	33.092	0.12057	33.09	33.042	33.162	-0.0024757	1125	40	0.9442611	0.02384001	0.94274163	382.56137	0	9.65863						84	6	2	NaN	NaN	NaN	0.64158	1	15769	15769		12.049	3.0867	1	5715.1	+		26121	9018	15013	15447	20842	20842					-0.04723706268123351
TDGGGTSH	8	Unmodified	_TDGGGTSH_					0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.2954725762	1	731.295473	730.288196	-0.096845	-7.0822E-05	-4.1441	-0.0030306	-4.2409	-0.0031014	731.2919258904822	55.194	0.024044	55.193	55.169	55.193	-0.0006218	657	49	1.2279087	0.028846383	1.2263893	250.55281	0	5.8860474						53	2	2	NaN	NaN	NaN	0.8439	1	3681	3681		3.1533	0	1	6165.5	+		26122	12356	15014	15448	20843	20843					-0.08773646061035834
TDGGGTSH	8	Unmodified	_TDGGGTSH_					0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.2954725762	1	731.295473	730.288196	-0.22735	-0.00016626	-2.9055	-0.0021248	-3.1328	-0.002291	731.2941766745394	55.242	0.048134	55.242	55.242	55.29	-0.00061798	657	46	1.2279087	0.027047753	1.2263893	250.55281	0	5.519043						76	3	2	NaN	NaN	NaN	0.8439	1	3682	3682		3.1533	0	1	8386.9	+		26123	12356	15014	15448	20844	20844					-0.08773646061035834
TDGGGTSH	8	Unmodified						0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	731.295473	730.288196	1.5747	0.0011516	-4.5574	-0.0033328	-2.9827	-0.0021813	731.2918035916676	55.196	0.023998	55.196	55.172	55.196	0	660	43	1.2261056	0.025245905	1.2261056	250.18488		5.1513977	0.0013796	-0.00017157	-0.00014187	NaN	3.1533	47	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4645.9	+		26124	12356	15014	15448							-0.08773646061035834
TDGGGTSH	8	Unmodified						0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	731.295473	730.288196	1.5282	0.0011175	-4.602	-0.0033655	-3.0739	-0.0022479	731.2922780226233	55.244	0.072083	55.244	55.244	55.316	0	660	49	1.2261056	0.028849363	1.2261056	250.18488		5.886673	0.001402	-0.00073885	-0.00014187	NaN	3.1533	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6161.9	+		26125	12356	15014	15448							-0.08773646061035834
TDGGGTSH	8	Unmodified						0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	731.295473	730.288196	-0.096845	-7.0822E-05	-4.1441	-0.0030306	-4.2409	-0.0031014	731.2919258904822	55.194	0.024044	55.193	55.169	55.193	-0.0006218	657	49	1.2279087	0.028846383	1.2263893	250.55281		5.8860474	-0.0013796	0.0001307	0.00014187	NaN	3.1533	53	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6165.5	+		26126	12356	15014	15448							-0.08773646061035834
TDGGGTSH	8	Unmodified						0	0	0			REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	REV__ENST00000476531.1_1_X:77380729-77381324:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	731.295473	730.288196	-0.22735	-0.00016626	-2.9055	-0.0021248	-3.1328	-0.002291	731.2941766745394	55.242	0.048134	55.242	55.242	55.29	-0.00061798	657	46	1.2279087	0.027047753	1.2263893	250.55281		5.519043	-0.001402	0.00050185	0.00014187	NaN	3.1533	76	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8386.9	+		26127	12356	15014	15448							-0.08773646061035834
TDGGSAFSI	9	Unmodified	_TDGGSAFSI_					0	0	0			REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.3890386104	1	854.389039	853.381762	1.7052	0.0014569	-0.33439	-0.0002857	1.3708	0.0011712	854.3893436081773	23.947	0.16884	23.947	23.923	24.092	0	459	49	1.3464937	0.028649807	1.3464937	274.0187	0	5.830414						150	8	3	NaN	NaN	NaN	0.062072	1	5436	5436		41.785	0	1	13763	+		26128	9473	15015	15449	20845	20845					-0.05079346678621732
TDGGSAFSI	9	Unmodified	_TDGGSAFSI_					0	0	0			REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.3890386104	1	854.389039	853.381762	1.3779	0.0011773	-0.71927	-0.00061454	0.65862	0.00056272	854.3886996731785	23.971	0.16888	23.958	23.91	24.079	-0.01305	456	49	1.348284	0.028649807	1.3467646	274.38306	0	5.830414						140	8	2	NaN	NaN	NaN	0.14301	1	5299	5299		29.598	0	1	12409	+		26129	9473	15015	15449	20846	20846					-0.05079346678621732
TDGGSAFSI	9	Unmodified						0	0	0			REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	854.389039	853.381762	1.7052	0.0014569	-0.33439	-0.0002857	1.3708	0.0011712	854.3893436081773	23.947	0.16884	23.947	23.923	24.092	0	459	49	1.3464937	0.028649807	1.3464937	274.0187		5.830414	-0.0054376	0.00013746	-0.00013544	NaN	41.785	150	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13763	+		26130	9473	15015	15449							-0.05079346678621732
TDGGSAFSI	9	Unmodified						0	0	0			REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	REV__ENST00000590113.4_1_19:435948-439002:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	854.389039	853.381762	1.3779	0.0011773	-0.71927	-0.00061454	0.65862	0.00056272	854.3886996731785	23.971	0.16888	23.958	23.91	24.079	-0.01305	456	49	1.348284	0.028649807	1.3467646	274.38306		5.830414	0.0054376	-0.00019138	0.00013544	NaN	41.785	140	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12409	+		26131	9473	15015	15449							-0.05079346678621732
TDGVALFM	8	Unmodified	_TDGVALFM_					0	0	0		ENST00000276569.7_1_8:66516226-66516463:-|nuORF	ENST00000276569.7_1_8:66516226-66516463:-|nuORF	ENST00000276569.7_1_8:66516226-66516463:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	853.4124165894001	1	853.412417	852.40514	0.55691	0.00047527	0.82675	0.00070556	1.3837	0.0011808	853.4128117510578	31.91	0.12065	31.906	31.882	32.003	-0.0037613	402	52	1.3804773	0.03037405	1.3789579	280.93967	0	6.1813965						113	6	2	NaN	NaN	NaN	0.62311	1	5280	5280		23.85	8.8376	1	10588			26132	6352	15016	15450	20847	20847					-0.02696624165639605
TDGVALFM	8	Unmodified						0	0	0		ENST00000276569.7_1_8:66516226-66516463:-|nuORF	ENST00000276569.7_1_8:66516226-66516463:-|nuORF	ENST00000276569.7_1_8:66516226-66516463:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	853.412417	852.40514	1.2733	0.0010866	-0.18042	-0.00015397	1.0928	0.00093264	853.4128956572932	31.911	0.1207	31.911	31.887	32.008	0	402	46	1.3804773	0.026806235	1.3804773	280.93967		5.4553223	0.0024153	-0.00030069	0.00075972	NaN	23.85	118	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8881.5			26133	6352	15016	15450							-0.02696624165639605
TDLEILALL	9	Unmodified	_TDLEILALL_					0	0	0		ENST00000513594.5_1_4:120438269-120460171:-|nuORF;nc|ENSG00000138735|O76074-2|PDE5A;ENSG00000138735|ENST00000354960|PDE5A	ENST00000513594.5_1_4:120438269-120460171:-|nuORF	ENST00000513594.5_1_4:120438269-120460171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.7998829558	2	500.799883	999.585213	1.6762	0.00083943	-9.9617	-0.0049888	-8.2855	-0.0041494	500.7949501635776	25.057	0.096516	25.057	25.033	25.129	0	1257	40	0.86339295	0.023950994	0.86339295	350.58945	0	9.725555						136	5	3	NaN	NaN	NaN	0.36492	1	8587	8587		15.175	0	1	21732			26134	3185	15017	15451	20848	20848					0.08540378042994234
TDLIFEQFE	9	Unmodified	_TDLIFEQFE_					0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2742293113	2	571.274229	1140.53391	0.75741	0.00043269	-2.726	-0.0015573	-1.9685	-0.0011246	571.2727922107538	30.148	0.12066	30.142	30.118	30.238	-0.0064106	1248	79	0.8689189	0.047852874	0.86739945	352.24066	0	19.398499						208	6	3	NaN	NaN	NaN	0.29681	1	13993	13993		19.118	0	1	21787	+		26135	8795	15018	15452	20849	20849					-0.030739907217139262
TDLIFEQFE	9	Unmodified						0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.274229	1140.53391	0.75741	0.00043269	-2.726	-0.0015573	-1.9685	-0.0011246	571.2727922107538	30.148	0.12066	30.142	30.118	30.238	-0.0064106	1248	79	0.8689189	0.047852874	0.86739945	352.24066		19.398499	-0.0036873	0.00023646	0.00016117	NaN	19.118	208	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21787	+		26136	8795	15018	15452							-0.030739907217139262
TDPALVDVL	9	Unmodified	_TDPALVDVL_					0	0	0		ENSG00000183709|ENST00000331982|IFNL2	ENSG00000183709|ENST00000331982|IFNL2	ENSG00000183709|ENST00000331982|IFNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.514239124	1	942.514239	941.506963	1.8831	0.0017749	-0.92366	-0.00087057	0.95945	0.00090429	942.5134094525232	25.515	0.12056	25.515	25.467	25.588	0	300	91	1.4411188	0.0534333	1.4411188	292.83984	0	10.857819						152	6	2	NaN	NaN	NaN	0.062072	1	6849	6849		41.785	2.3258	1	24274			26137	5321	15019	15453	20850	20850					0.033869454577597935
TDPDLRVDAAY	11	Unmodified	_TDPDLRVDAAY_					0	0	0			REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.2987670401001	2	618.298767	1234.58298	1.4767	0.00091304	7.4412	0.0046009	8.9179	0.0055139	618.3027231756249	16.997	0.072029	16.997	16.997	17.069	0	1176	43	0.9130621	0.025722384	0.9130621	369.7983	0	10.417816						59	4	2	NaN	NaN	NaN	0.7072	1	17388	17388		6.9844	0.73415	1	4111.2	+		26138	10462	15020	15454	20851	20851					-0.024927024327553227
TDPDLRVDAAY	11	Unmodified						0	0	0			REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.298767	1234.58298	1.4767	0.00091304	7.4412	0.0046009	8.9179	0.0055139	618.3027231756249	16.997	0.072029	16.997	16.997	17.069	0	1176	43	0.9130621	0.025722384	0.9130621	369.7983		10.417816	-0.0036703	0.0018672	0.00075972	NaN	6.9844	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4111.2	+		26139	10462	15020	15454							-0.024927024327553227
TDPDLRVDAAY	11	Unmodified						0	0	0			REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	REV__nc|ENSG00000167333|Q6AZZ1-2|TRIM68	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.298767	1234.58298	1.5089	0.00093295	4.4729	0.0027656	5.9819	0.0036986	618.3026418853896	17.018	0.071957	17.005	16.981	17.053	-0.013294	1176	49	0.9130621	0.029387534	0.91154265	369.79834		11.902191	0.0036703	-0.0018033	-0.00075972	NaN	6.9844	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5806.4	+		26140	10462	15020	15454							-0.024927024327553227
TDPQLSPAV	9	Unmodified	_TDPQLSPAV_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4781879687001	1	927.478188	926.470912	2.5547	0.0023694	-2.0239	-0.0018771	0.53087	0.00049237	927.4764516846161	18.796	0.288	18.796	18.748	19.036	0	366	115	1.4019053	0.06785524	1.4019053	284.93817	0	13.791626						711	13	3	NaN	NaN	NaN	0.36492	1	6518	6518		15.175	0	1	113300			26141	3668	15021	15455	20852	20852					0.004734882809088958
TDPSVVIM	8	Unmodified	_TDPSVVIM_					0	0	0		ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000465323.1_1_11:3143079-3150378:-|nuORF;ENST00000477622.1_1_11:3143079-3147843:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	ENST00000534491.5_1_11:3114755-3187956:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.4386313399002	1	861.438631	860.431355	1.5043	0.0012959	7.2781	0.0062697	8.7824	0.0075655	861.4448970280856	25.033	0.14475	25.021	24.948	25.093	-0.012011	396	79	1.3840506	0.04647672	1.3825312	281.62512	0	9.457031						134	7	2	NaN	NaN	NaN	0.54545	1	5401	5401		28.667	3.7055	1	10133			26142	459	15022	15456	20853	20853					-0.004443549941584024
TDPVVADYK	9	Unmodified	_TDPVVADYK_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2558395929	2	504.25584	1006.49713	1.9295	0.00097297	-0.7248	-0.00036549	1.2047	0.00060748	504.255314592691	17.549	0.1198	17.549	17.477	17.597	0	1497	40	0.71537006	0.024159491	0.71537006	290.45615	0	9.809296						96	6	2	NaN	NaN	NaN	0.68136	1	8835	8835		0.79988	0.10873	1	7614.8			26143	2743	15023	15457	20854	20854					-0.005862425476152566
TDQLLDLF	8	Unmodified	_TDQLLDLF_					0	0	0		nc|ENSG00000095564|O14981-2|BTAF1;ENSG00000095564|ENST00000265990|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598	1	964.498589	963.491313	1.0893	0.0010506	-1.8919	-0.0018247	-0.8026	-0.0007741	964.4975642841991	30.824	0.07239	30.818	30.794	30.866	-0.0057564	276	103	1.4553556	0.060532093	1.4538362	295.63553	0	12.296234						217	4	3	NaN	NaN	NaN	0.26796	1	7278	7278		44.638	5.1797	1	24083			26144	1130	15024	15458	20855	20855					0.00810658940713438
TDQLPTIIA	9	Unmodified	_TDQLPTIIA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.27403234605003	2	486.274032	970.533512	2.0402	0.00099207	-0.47274	-0.00022988	1.5674	0.00076219	486.27396831312115	19.732	0.19214	19.732	19.684	19.876	0	1335	94	0.8154261	0.05721903	0.8154261	331.24655	0	23.243805						325	9	2	NaN	NaN	NaN	0.2345	1	7631	7631		23.118	0.031776	1	43695	+		26145	10114	15025	15459	20856	20856					0.04706634349099659
TDQLPTIIA	9	Unmodified						0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.274032	970.533512	2.0402	0.00099207	-0.47274	-0.00022988	1.5674	0.00076219	486.27396831312115	19.732	0.19214	19.732	19.684	19.876	0	1335	94	0.8154261	0.05721903	0.8154261	331.24655		23.243805	-0.18497	0.001274	0.0044555	NaN	23.118	325	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43695	+		26146	10114	15025	15459							0.04706634349099659
TDQLPTIIA	9	Unmodified						0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.274032	970.533512	2.0846	0.0010137	-5.6955	-0.0027696	-3.6108	-0.0017559	486.270700256511	20.116	0.048088	20.102	20.078	20.126	-0.014141	1347	34	0.8080346	0.020329893	0.8065152	328.24396		8.258514	0.18497	-0.0038053	-0.0044555	NaN	23.118	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4379.4	+		26147	10114	15025	15459							0.04706634349099659
TDQPPSLLDEE	11	Unmodified	_TDQPPSLLDEE_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.1944688009001	3	415.194469	1242.56158	1.379	0.00057257	5.3006	0.0022008	6.6797	0.0027734	415.19674297422813	26.625	0.0965	26.614	26.566	26.663	-0.010643	1428	25	0.7580582	0.014829516	0.75653875	460.4937	0	9.008423						65	5	2	NaN	NaN	NaN	0.65577	1	16843	16843		4.9007	0	1	4551.8	+		26148	11211	15026	15460	20857	20857					-0.050001322520984104
TDQSHHHGYLD	11	Unmodified	_TDQSHHHGYLD_					0	0	0			REV__nc|ENSG00000153094|O43521-17|BCL2L11	REV__nc|ENSG00000153094|O43521-17|BCL2L11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.2814399542001	2	655.28144	1308.54833	0.63363	0.0004152	7.8101	0.0051178	8.4437	0.005533	655.2863522905236	12.7	0.096105	12.7	12.676	12.772	0	1137	37	0.9369253	0.022012115	0.9369253	379.22583	0	8.909546						100	5	3	NaN	NaN	NaN	0.63477	1	18904	18904		11.739	0.19041	1	7269.2	+		26149	13144	15027	15461	20858	20858					-0.09360525520855845
TDQSHHHGYLD	11	Unmodified						0	0	0			REV__nc|ENSG00000153094|O43521-17|BCL2L11	REV__nc|ENSG00000153094|O43521-17|BCL2L11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	655.28144	1308.54833	0.63363	0.0004152	7.8101	0.0051178	8.4437	0.005533	655.2863522905236	12.7	0.096105	12.7	12.676	12.772	0	1137	37	0.9369253	0.022012115	0.9369253	379.22583		8.909546	0.01572	-0.00025379	-0.0001574	NaN	11.739	100	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7269.2	+		26150	13144	15027	15461							-0.09360525520855845
TDQSHHHGYLD	11	Unmodified						0	0	0			REV__nc|ENSG00000153094|O43521-17|BCL2L11	REV__nc|ENSG00000153094|O43521-17|BCL2L11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	655.28144	1308.54833	1.0537	0.00069047	8.3539	0.0054741	9.4076	0.0061646	655.2854147834839	12.678	0.12014	12.669	12.669	12.789	-0.00947	1134	40	0.9387595	0.023845196	0.93724006	379.96826		9.651489	-0.01572	0.00045881	0.0001574	NaN	11.739	68	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5263.8	+		26151	13144	15027	15461							-0.09360525520855845
TDRHELTSW	9	Unmodified	_TDRHELTSW_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7727194651001	2	572.772719	1143.53089	1.7936	0.0010273	2.1784	0.0012477	3.9719	0.002275	573.275271084808	25.588	0.21714	25.576	25.503	25.721	-0.0116	1233	133	0.87812483	0.080999315	0.8766054	355.9614	0	32.83429						450	10	3	NaN	NaN	NaN	0.14787	1	14090	14090		28.896	3.9346	1	93496			26152	1914	15028	15462	20859	20859					-0.035138210558670835
TDSKQPVFL	9	Unmodified	_TDSKQPVFL_					0	0	0			REV__ZBTB21|p.E1023K|1|0.21|ENSG00000173276|chr21:41991029-41991029|C/T|missense_variant	REV__ZBTB21|p.E1023K|1|0.21|ENSG00000173276|chr21:41991029-41991029|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5516872628	1	1034.55169	1033.54441	1.4662	0.0015169	2.1433	0.0022173	3.6095	0.0037342	1034.551094701485	36.35	0.24113	36.35	36.278	36.519	0	135	112	1.5387528	0.06554186	1.5387528	312.27765	0	13.301178						332	11	4	NaN	NaN	NaN	0.14787	1	9935	9935		28.896	2.7806	1	26186	+		26153	13650	15029	15463	20860	20860					0.028980367233771176
TDSSPCSFI	9	Unmodified	_TDSSPCSFI_					0	0	0			REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.70512529085005	2	478.705125	955.395698	2.1412	0.001025	-9.7345	-0.00466	-7.5933	-0.0036349	478.70065260418255	15.772	0.11976	15.759	15.687	15.807	-0.012611	1374	31	0.791392	0.018500745	0.7898726	321.55447	0	7.517151						82	6	2	NaN	NaN	NaN	0.39244	1	7064	7064		14.042	4.9184	1	7380.5	+		26154	12474	15030	15464	20861	20861					-0.08378437241822212
TDSYTWVDTLE	11	Unmodified	_TDSYTWVDTLE_					0	0	0			REV__ENST00000484559.1_1_2:160728960-160761235:-|nuORF	REV__ENST00000484559.1_1_2:160728960-160761235:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.29589000015	2	665.29589	1328.57723	2.2514	0.0014978	3.0305	0.0020161	5.2818	0.003514	665.298333759616	19.948	0.072289	19.934	19.909	19.982	-0.014141	1110	64	0.95342636	0.038485885	0.9519069	385.84396	0	15.574951						68	4	2	NaN	NaN	NaN	0.7072	1	18377	18377		6.9844	1.9675	1	4867.7	+		26155	8501	15031	15465	20862	20862					-0.07391845735082825
TDTSIILF	8	Unmodified	_TDTSIILF_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENST00000564798.2_2_16:56374475-56377859:+|nuORF;nc|ENSG00000127955|P63096-2|GNAI1;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	909.4927754004002	1	909.492775	908.485499	1.3961	0.0012698	0.10748	9.7751E-05	1.5036	0.0013675	909.4923244319903	31.959	0.07242	31.959	31.911	31.983	0	336	52	1.419741	0.03030622	1.419741	288.64694	0	6.16156						93	4	2	NaN	NaN	NaN	0.40747	1	6210	6210		36.036	12.186	1	9070.8			26156	7930	15032	15466	20863	20863					0.027595604290581832
TDTSIILF	8	Unmodified	_TDTSIILF_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENST00000564798.2_2_16:56374475-56377859:+|nuORF;nc|ENSG00000127955|P63096-2|GNAI1;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.4927754004002	1	909.492775	908.485499	1.1868	0.0010794	-1.6859	-0.0015333	-0.49914	-0.00045396	909.4923843419035	31.934	0.096533	31.93	31.906	32.003	-0.0037613	330	46	1.4233059	0.026737928	1.4217864	289.3717	0	5.4360657						109	5	2	NaN	NaN	NaN	0.40747	1	6091	6091		36.036	12.186	1	10615			26157	7930	15032	15466	20864	20864					0.027595604290581832
TDVDTGMDFR	10	Unmodified	_TDVDTGMDFR_					0	0	0		ENST00000438282.6_1_3:2613181-3030164:+|nuORF;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;ENSG00000144619|ENST00000418658|CNTN4	ENST00000438282.6_1_3:2613181-3030164:+|nuORF	ENST00000438282.6_1_3:2613181-3030164:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7505954270001	2	578.750595	1155.48664	2.0215	0.0011699	-4.6945	-0.002717	-2.6731	-0.001547	578.7480560735315	18.194	0.19193	18.18	18.084	18.276	-0.01395	1215	46	0.8891654	0.02759105	0.88764596	360.39246	0	11.183075						170	9	2	NaN	NaN	NaN	0.69669	1	14492	14492		8.2775	0.032722	1	18643			26158	3484	15033	15467	20865	20865					-0.08488593264337396
TDVESTLLQ	9	Unmodified	_TDVESTLLQ_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.5098820276002	1	1005.50988	1004.50261	1.7863	0.0017962	-3.9777	-0.0039996	-2.1914	-0.0022034	1006.5102680474381	28.412	0.072376	28.412	28.388	28.46	0	240	79	1.4766881	0.046181083	1.4766881	299.7962	0	9.375671						102	4	2	NaN	NaN	NaN	0.47587	1	8762	8762		10.605	0	1	10204			26159	1181	15034	15468	20866	20866					0.0005343624420675042
TEANVVRKF	9	Unmodified	_TEANVVRKF_					0	0	0		nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2983731096001	2	532.298373	1062.58219	1.9957	0.0010623	-3.2619	-0.0017363	-1.2663	-0.00067403	532.2965574041766	14.117	0.096044	14.117	14.093	14.189	0	1248	34	0.8689189	0.020259678	0.8689189	352.54916	0	8.220001						71	5	2	NaN	NaN	NaN	0.66822	1	11249	11249		1.9246	0.25428	1	6773.7			26160	2074	15035	15469	20867	20867					0.05340547708851773
TEAYEKWREW	10	Unmodified	_TEAYEKWREW_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	466.5543313759	3	466.554331	1396.64116	1.3286	0.00061986	0.068188	3.1814E-05	1.3968	0.00065167	466.8887205001202	19.876	0.072077	19.876	19.828	19.9	0	1404	37	0.77288127	0.022225022	0.77288127	468.9295	0	13.484558						72	4	2	NaN	NaN	NaN	0.019815	1	20036	20036		46.512	36.876	1	12538			26161	1927	15036	15470	20868	20868					-0.04129020787468107
TEAYEKWREW	10	Unmodified	_TEAYEKWREW_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3278588305501	2	699.327859	1396.64116	1.3388	0.00093624	0.27893	0.00019506	1.6177	0.0011313	699.3274366699027	19.876	0.12022	19.876	19.828	19.948	0	1080	34	0.9717421	0.020135403	0.9717421	393.05887	0	8.144531						155	6	3	NaN	NaN	NaN	0.14291	1	20037	20037		40.435	15.942	1	15191			26162	1927	15036	15470	20869	20869					-0.04129020787468107
TEAYEKWREW	10	Unmodified	_TEAYEKWREW_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3278588305501	2	699.327859	1396.64116	1.1047	0.00077253	-0.667	-0.00046645	0.43768	0.00030608	699.3274209348485	19.948	0.16856	19.934	19.885	20.054	-0.014141	1080	37	0.9717421	0.021967113	0.97022265	393.05887	0	8.885437						148	8	3	NaN	NaN	NaN	0.14291	1	19095	19095		40.435	20.843	1	13350			26163	1927	15036	15470	20870	20870					-0.04129020787468107
TEAYEKWREW	10	Unmodified	_TEAYEKWREW_					0	0	0		nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	nc|ENSG00000113657|Q14195|DPYSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.5543313759	3	466.554331	1396.64116	0.63415	0.00029587	0.87467	0.00040808	1.5088	0.00070395	466.5550908608248	19.924	0.19257	19.909	19.861	20.054	-0.014141	1404	37	0.77288127	0.022225022	0.7713618	468.9295	0	13.484558						180	9	3	NaN	NaN	NaN	0.20007	1	19096	19096		29.509	16.075	1	16125			26164	1927	15036	15470	20871	20871					-0.04129020787468107
TECATGGF	8	Unmodified	_TECATGGF_					0	0	0			REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3134308263002	1	785.313431	784.306154	1.1914	0.00093562	4.4423	0.0034886	5.6337	0.0044242	785.3162981219522	41.498	0.1443	41.498	41.498	41.642	0	621	34	1.2495319	0.019807458	1.2495319	254.64122	0	4.0365295						104	7	2	NaN	NaN	NaN	0.84692	1	4552	4552		1.4396	0	1	7611.8	+		26165	9643	15037	15471	20872	20872					-0.09462647130533242
TECATGGF	8	Unmodified						0	0	0			REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.313431	784.306154	1.1914	0.00093562	4.4423	0.0034886	5.6337	0.0044242	785.3162981219522	41.498	0.1443	41.498	41.498	41.642	0	621	34	1.2495319	0.019807458	1.2495319	254.64122		4.0365295	-0.003379	0.00040131	-0.00014062	NaN	1.4396	104	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7611.8	+		26166	9643	15037	15471							-0.09462647130533242
TECATGGF	8	Unmodified						0	0	0			REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	REV__STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	785.313431	784.306154	1.1298	0.00088725	3.3403	0.0026232	4.4701	0.0035105	785.317410225745	41.496	0.12023	41.505	41.432	41.553	0.0082588	618	43	1.2513325	0.025205374	1.2498131	255.00818		5.1365967	0.003379	-0.00046407	0.00014062	NaN	1.4396	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10251	+		26167	9643	15037	15471							-0.09462647130533242
TEDDEEELL	9	Unmodified	_TEDDEEELL_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7325912516001	2	546.732591	1091.45063	0.85277	0.00046624	2.557	0.001398	3.4097	0.0018642	547.2314651954988	30.825	0.096508	30.825	30.801	30.897	0	1269	79	0.8560222	0.04794085	0.8560222	347.19894	0	19.44461						154	5	4	NaN	NaN	NaN	0.45297	1	12446	12446		11.548	0	1	22068			26168	312	15038	15472	20873	20873					-0.09143771960202685
TEDEPREIF	9	Unmodified	_TEDEPREIF_					0	0	0			REV__nc|ENSG00000174032|Q5SVS4-2|SLC25A30	REV__nc|ENSG00000174032|Q5SVS4-2|SLC25A30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1135.5265947243	1	1135.52659	1134.51932	1.2848	0.0014589	-8.1106	-0.0092098	-6.8258	-0.0077508	1135.5170424324272	24.55	0.096443	24.538	24.514	24.61	-0.012394	75	64	1.5741152	0.037104845	1.5725957	319.07953	0	7.521332						135	5	2	NaN	NaN	NaN	0.13602	1	13789	13789		30.61	10.161	1	10883	+		26169	10693	15039	15473	20874	20874					-0.042560628698538494
TEDEPREIF	9	Unmodified						0	0	0			REV__nc|ENSG00000174032|Q5SVS4-2|SLC25A30	REV__nc|ENSG00000174032|Q5SVS4-2|SLC25A30	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1135.52659	1134.51932	1.2848	0.0014589	-8.1106	-0.0092098	-6.8258	-0.0077508	1135.5170424324272	24.55	0.096443	24.538	24.514	24.61	-0.012394	75	64	1.5741152	0.037104845	1.5725957	319.07953		7.521332	-0.0062626	0.0017118	0.00012345	NaN	30.61	135	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10883	+		26170	10693	15039	15473							-0.042560628698538494
TEDSPLAPEE	10	Unmodified	_TEDSPLAPEE_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.24312614815	2	544.243126	1086.4717	1.4645	0.00079702	-2.8285	-0.0015394	-1.364	-0.00074236	544.2413006899275	22.79	0.12041	22.776	22.752	22.872	-0.01354	1257	64	0.86339295	0.038694263	0.8618735	350.2085	0	15.695129						132	6	2	NaN	NaN	NaN	0.67523	1	11912	11912		9.746	0	1	12054			26171	709	15040	15474	20875	20875					-0.06807761860704886
TEDSPLAPEE	10	Unmodified						0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.243126	1086.4717	1.7097	0.00093048	-0.84472	-0.00045973	0.86496	0.00047075	544.2426196445348	22.79	0.14473	22.79	22.742	22.887	0	1254	61	0.8652351	0.036845744	0.8652351	350.95572		14.9453125	0.0070875	0.00055067	0.0016808	NaN	9.746	154	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16291			26172	709	15040	15474							-0.06807761860704886
TEEGELLKRY	10	Unmodified	_TEEGELLKRY_					0	0	0			REV__ENSG00000148798|ENST00000369849|INA	REV__ENSG00000148798|ENST00000369849|INA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.21894870576676	3	413.218949	1236.63502	1.7994	0.00074353	-1.4802	-0.00061165	0.31915	0.00013188	413.21843567010876	16.347	0.11991	16.334	16.334	16.454	-0.012995	1437	52	0.7524962	0.031531572	0.75097674	457.1391	0	19.155304						98	6	2	NaN	NaN	NaN	0.77024	1	16719	16719		1.2289	0	1	9019.7	+		26173	8937	15041	15475	20876	20876					0.026164609810393813
TEEILADVL	9	Unmodified	_TEEILADVL_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5353684966	1	1002.53537	1001.52809	1.8852	0.00189	-3.0478	-0.0030555	-1.1626	-0.0011655	1002.5317970500196	26.553	0.09655	26.553	26.529	26.625	0	219	76	1.4891195	0.04440248	1.4891195	302.33218	0	9.014954						116	5	2	NaN	NaN	NaN	0.20577	1	8658	8658		24.961	1.6266	1	19365			26174	6078	15042	15476	20877	20877					0.02738910766618119
TEEILEKAF	9	Unmodified	_TEEILEKAF_					0	0	0		nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP	nc|ENSG00000271793|O60506-5|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	ENSG00000135316|ENST00000369622|SYNCRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.28459703235	2	540.284597	1078.55464	1.4794	0.00079932	-0.89636	-0.00048429	0.58307	0.00031503	540.28366902632	22.621	0.09647	22.607	22.559	22.655	-0.01354	1278	34	0.85049206	0.020279348	0.8489726	345.0074	0	8.22644						76	5	3	NaN	NaN	NaN	0.27507	1	11612	11612		20.513	9.343	1	6707.9			26175	8055;2929	15043	15477	20878	20878					0.018505996579506245
TEELMWIGF	9	Unmodified	_TEELMWIGF_					0	0	0			REV__ENSG00000105198|ENST00000221797|LGALS13	REV__ENSG00000105198|ENST00000221797|LGALS13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2678927231501	2	563.267893	1124.52123	1.6198	0.00091236	-7.4473	-0.0041948	-5.8275	-0.0032824	563.2636270387777	21.32	0.096214	21.32	21.296	21.392	0	1248	49	0.8689189	0.029470205	0.8689189	352.3006	0	11.948578						89	5	2	NaN	NaN	NaN	0.55027	1	13862	13862		7.5404	1.2902	1	12669	+		26176	8949	15044	15478	20879	20879					-0.03604725385594065
TEELMWIGF	9	Unmodified						0	0	0			REV__ENSG00000105198|ENST00000221797|LGALS13	REV__ENSG00000105198|ENST00000221797|LGALS13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.267893	1124.52123	1.6198	0.00091236	-7.4473	-0.0041948	-5.8275	-0.0032824	563.2636270387777	21.32	0.096214	21.32	21.296	21.392	0	1248	49	0.8689189	0.029470205	0.8689189	352.3006		11.948578	0.0069139	0.00069552	0.0016806	NaN	7.5404	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12669	+		26177	8949	15044	15478							-0.03604725385594065
TEEMKSLIRL	10	Unmodified	_TEEMKSLIRL_					0	0	0		ENSG00000214087|ENST00000622299|ARL16;nc|ENSG00000214087|Q0P5N6|ARL16	ENSG00000214087|ENST00000622299|ARL16	ENSG00000214087|ENST00000622299|ARL16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.2286792519001	3	407.228679	1218.66421	1.2176	0.00049584	-2.8336	-0.0011539	-1.616	-0.00065809	407.2270391167756	20.501	0.048079	20.501	20.477	20.525	0	1512	28	0.7060759	0.016734898	0.7060759	429.00864	0	10.16806						45	3	2	NaN	NaN	NaN	0.66796	1	16958	16958		5.9336	1.3161	1	3073.4			26178	5980	15045	15479	20880	20880					0.06362282005648012
TEEQLEAF	8	Unmodified	_TEEQLEAF_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4414681114001	1	966.441468	965.434192	1.8564	0.0017941	1.6549	0.0015994	3.5113	0.0033935	966.4435752030387	25.226	0.12067	25.226	25.202	25.322	0	327	43	1.425088	0.024948835	1.425088	289.47885	0	5.067871						96	6	3	NaN	NaN	NaN	0.55996	1	7490	7490		27.789	0	1	6760.9			26179	13682	15046	15480	20881	20881					-0.04990808335651309
TEFTAPTVYP	10	Unmodified	_TEFTAPTVYP_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.27677200025	2	563.276772	1124.53899	1.6277	0.00091685	0.63487	0.00035761	2.2626	0.0012745	563.2780042757555	24.068	0.09647	24.068	24.019	24.116	0	1197	70	0.9001988	0.042306185	0.9001988	364.98285	0	17.152924						148	5	3	NaN	NaN	NaN	0.76548	1	13865	13865		3.5698	1.1083	1	14029	+		26180	8783	15047	15481	20882	20882					-0.01829686859082358
TEFTAPTVYP	10	Unmodified						0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.276772	1124.53899	1.6277	0.00091685	0.63487	0.00035761	2.2626	0.0012745	563.2780042757555	24.068	0.09647	24.068	24.019	24.116	0	1197	70	0.9001988	0.042306185	0.9001988	364.98285		17.152924	0	0	0	NaN	3.5698	148	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14029	+		26181	8783	15047	15481							-0.01829686859082358
TEGALGYAYW	10	Unmodified	_TEGALGYAYW_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.5153017564999	1	1130.5153	1129.50803	2.2327	0.0025241	2.5431	0.002875	4.7757	0.0053991	1130.5183615259878	28.508	0.072407	28.508	28.484	28.556	0	81	55	1.5705823	0.031802535	1.5705823	318.38034	0	6.4468384						85	4	2	NaN	NaN	NaN	0.10964	1	14055	14055		44.638	26.669	1	5701.2			26182	5791	15048	15482	20883	20883					-0.051548401733498395
TEGALLALA	9	Unmodified	_TEGALLALA_					0	0	0		nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4931097514	1	858.49311	857.485833	1.1848	0.0010171	-0.2496	-0.00021428	0.9352	0.00080286	858.492290853324	24.526	0.096487	24.514	24.465	24.562	-0.012392	420	49	1.3697531	0.02860713	1.3682337	278.73096	0	5.8212585						113	5	3	NaN	NaN	NaN	0.030391	1	5370	5370		58.599	0	1	14428			26183	3707	15049	15483	20884	20884					0.051389801488994635
TEGALLALA	9	Unmodified						0	0	0		nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	nc|ENSG00000150275|Q96QU1-2|PCDH15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	858.49311	857.485833	1.5548	0.0013348	0.43019	0.00036931	1.985	0.0017041	858.4935500570881	24.526	0.096426	24.526	24.478	24.574	0	420	58	1.3697531	0.03397274	1.3697531	278.73096		6.9131165	0.0062606	0.00032199	0.00075972	NaN	58.599	131	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16350			26184	3707	15049	15483							0.051389801488994635
TEGISKSG	8	Unmodified	_TEGISKSG_					0	0	0		ENST00000595916.5_1_19:3880927-3893658:+|nuORF	ENST00000595916.5_1_19:3880927-3893658:+|nuORF	ENST00000595916.5_1_19:3880927-3893658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	778.3941239883002	1	778.394124	777.386848	1.6838	0.0013107	3.6702	0.0028569	5.3541	0.0041676	778.3967135307377	27.688	0.096527	27.688	27.664	27.76	0	564	43	1.2837118	0.02516234	1.2837118	261.6468	0	5.128601						85	5	2	NaN	NaN	NaN	0.79379	1	4458	4458		10.052	0	1	7354.3			26185	7752	15050	15484	20885	20885					-0.010750428159781222
TEGLFNGS	8	Unmodified	_TEGLFNGS_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.3784739241001	1	824.378474	823.371197	1.8801	0.0015499	4.2905	0.003537	6.1706	0.0050869	824.3816813481966	30.463	0.24134	30.463	30.415	30.656	0	480	85	1.3339561	0.050185323	1.3339561	271.62405	0	10.218903						336	11	2	NaN	NaN	NaN	0.63138	1	5063	5063		23.334	1.2081	1	83514	+		26186	8321	15051	15485	20886	20886					-0.04755329333033842
TEGLFNGS	8	Unmodified						0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	824.378474	823.371197	1.8801	0.0015499	4.2905	0.003537	6.1706	0.0050869	824.3816813481966	30.463	0.24134	30.463	30.415	30.656	0	480	85	1.3339561	0.050185323	1.3339561	271.62405		10.218903	-0.068992	0.00026058	0.0016556	NaN	23.334	336	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83514	+		26187	8321	15051	15485							-0.04755329333033842
TEGLFNGS	8	Unmodified						0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	824.378474	823.371197	1.4802	0.0012202	1.7898	0.0014755	3.27	0.0026957	824.381858785862	30.607	0.072412	30.601	30.601	30.673	-0.0057545	483	70	1.3321642	0.041239023	1.3306447	271.2592		8.397217	0.068992	-0.0018009	-0.0016556	NaN	23.334	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5273.3	+		26188	8321	15051	15485							-0.04755329333033842
TEGLLGAF	8	Unmodified	_TEGLLGAF_					0	0	0		ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.4246958352	1	807.424696	806.417419	2.145	0.0017319	-0.60031	-0.00048471	1.5447	0.0012472	807.4241740329857	28.46	0.19311	28.46	28.412	28.605	0	522	103	1.3088527	0.06104994	1.3088527	266.60437	0	12.435455						346	9	3	NaN	NaN	NaN	0.078841	1	4842	4842		69.745	16.421	1	74253			26189	7594	15052	15486	20887	20887					0.006467355690460863
TEGLLGAF	8	Unmodified	_TEGLLGAF_					0	0	0		ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	807.4246958352	1	807.424696	806.417419	1.4528	0.0011731	-1.1039	-0.00089135	0.34889	0.00028171	807.4237187575071	28.483	0.21712	28.475	28.427	28.644	-0.0083504	522	76	1.3088527	0.04486811	1.3073332	266.60437	0	9.139313						353	10	3	NaN	NaN	NaN	0.064024	1	4748	4748		74.274	17.303	1	73943			26190	7594	15052	15486	20888	20888					0.006467355690460863
TEGRQDGHLW	10	Unmodified	_TEGRQDGHLW_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7836185024	2	599.783619	1197.55268	1.794	0.001076	-2.1061	-0.0012632	-0.31211	-0.0001872	600.2832935563822	15.388	0.047977	15.376	15.376	15.424	-0.012202	1203	55	0.8965218	0.03309667	0.89500237	363.2235	0	13.409027						62	3	2	NaN	NaN	NaN	0.70538	1	15738	15738		7.6826	1.4324	1	3679.8			26191	2021	15053	15487	20889	20889					-0.03819016307284073
TEGRQDGHLW	10	Unmodified	_TEGRQDGHLW_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7836185024	2	599.783619	1197.55268	1.3152	0.00078881	3.439	0.0020626	4.7541	0.0028514	599.7843594069666	15.316	0.071997	15.304	15.256	15.328	-0.012202	1203	67	0.8965218	0.040455878	0.89500237	363.22348	0	16.390594						94	4	2	NaN	NaN	NaN	0.66796	1	15740	15740		10.244	1.9989	1	6793.4			26192	2021	15053	15487	20890	20890					-0.03819016307284073
TEGVVSVSW	9	Unmodified	_TEGVVSVSW_					0	0	0		ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4781879687001	1	963.478188	962.470912	2.2534	0.0021711	-0.79248	-0.00076354	1.461	0.0014076	963.476028966722	25.974	0.048256	25.962	25.938	25.986	-0.0116	324	58	1.42687	0.03385365	1.4253505	289.85336	0	6.877014						88	3	2	NaN	NaN	NaN	0.055351	1	7242	7242		44.638	14.028	1	10282			26193	3335	15054	15488	20891	20891					-0.01182511719082413
TEGYAIVI	8	Unmodified	_TEGYAIVI_					0	0	0			REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4665606499001	1	865.466561	864.459284	1.3324	0.0011532	-1.7412	-0.0015069	-0.40875	-0.00035376	865.4648503634832	30.68	0.072378	30.68	30.656	30.728	0	399	58	1.382264	0.033958316	1.382264	281.24103	0	6.9093018						94	4	2	NaN	NaN	NaN	0.76633	1	5588	5588		13.737	1.1492	1	6307	+		26194	13454	15055	15489	20892	20892					0.02163291257579658
TEGYAIVI	8	Unmodified	_TEGYAIVI_					0	0	0			REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4665606499001	1	865.466561	864.459284	1.1736	0.0010157	-1.7258	-0.0014936	-0.55217	-0.00047788	865.4646131878402	30.679	0.072382	30.673	30.649	30.722	-0.0057545	402	61	1.3804773	0.035735965	1.3789579	280.8775	0	7.270996						97	4	2	NaN	NaN	NaN	0.62311	1	5451	5451		23.85	4.5657	1	7434.2	+		26195	13454	15055	15489	20893	20893					0.02163291257579658
TEGYAIVI	8	Unmodified						0	0	0			REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	865.466561	864.459284	1.3324	0.0011532	-1.7412	-0.0015069	-0.40875	-0.00035376	865.4648503634832	30.68	0.072378	30.68	30.656	30.728	0	399	58	1.382264	0.033958316	1.382264	281.24103		6.9093018	0.0033941	-7.8268E-06	0.0016531	NaN	23.85	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6307	+		26196	13454	15055	15489							0.02163291257579658
TEGYAIVI	8	Unmodified						0	0	0			REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	REV__tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	865.466561	864.459284	1.1736	0.0010157	-1.7258	-0.0014936	-0.55217	-0.00047788	865.4646131878402	30.679	0.072382	30.673	30.649	30.722	-0.0057545	402	61	1.3804773	0.035735965	1.3789579	280.8775		7.270996	-0.0033941	5.4975E-06	-0.0016531	NaN	23.85	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7434.2	+		26197	13454	15055	15489							0.02163291257579658
TEHIGSSEIG	10	Unmodified	_TEHIGSSEIG_					0	0	0			REV__ENSG00000169067|ENST00000423391|ACTBL2	REV__ENSG00000169067|ENST00000423391|ACTBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2460031881001	2	515.246003	1028.47745	1.7936	0.00092412	-1.0366	-0.00053412	0.75693	0.00039	515.2457212388068	21.224	0.072258	21.224	21.2	21.272	0	1293	40	0.84127116	0.023979485	0.84127116	341.47635	0	9.733398						61	4	2	NaN	NaN	NaN	0.76548	1	9703	9703		3.5698	0.41644	1	4343.7	+		26198	10533	15056	15490	20894	20894					-0.035646185583800616
TEHYDIPKVSW	11	Unmodified	_TEHYDIPKVSW_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8380593761001	2	687.838059	1373.66157	2.2619	0.0015559	0.50902	0.00035012	2.771	0.001906	687.8377668972067	22.332	0.048214	22.332	22.308	22.356	0	1101	37	0.95892316	0.021986008	0.95892316	387.93735	0	8.894562						34	3	2	NaN	NaN	NaN	0.73717	1	19838	19838		5.0169	1.8053	1	2468.8			26199	1510	15057	15491	20895	20895					-0.010318501276742609
TEHYDIPKVSW	11	Unmodified						0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	687.838059	1373.66157	1.7439	0.0011995	-3.4743	-0.0023897	-1.7304	-0.0011902	687.8358161709075	22.38	0.048136	22.366	22.342	22.39	-0.013733	1098	43	0.960755	0.025644839	0.9592356	388.67847		10.374756	0.016973	-0.0028963	0.00015622	NaN	5.0169	56	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4463.6			26200	1510	15057	15491							-0.010318501276742609
TEILAKEETEI	11	Unmodified	_TEILAKEETEI_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-4|KNL1	REV__nc|ENSG00000137812|Q8NG31-4|KNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.3375578496001	2	638.337558	1274.66056	0.96716	0.00061737	8.7567	0.0055897	9.7239	0.0062071	638.3431355851247	31.813	0.1207	31.809	31.761	31.881	-0.0044155	1137	52	0.9369253	0.031178772	0.93540585	379.33115	0	12.623291						212	6	4	NaN	NaN	NaN	0.47586	1	17506	17506		19.336	1.5375	1	33648	+		26201	9695	15058	15492	20896	20896					0.03421890712775166
TEITDDLHFY	10	Unmodified	_TEITDDLHFY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.2878680028	2	627.287868	1252.56118	2.1443	0.0013451	0.97043	0.00060874	3.1147	0.0019538	627.2889150453324	25.853	0.16891	25.853	25.829	25.998	0	1104	97	0.9570911	0.058679998	0.9570911	387.56894	0	23.762146						236	8	2	NaN	NaN	NaN	0.12649	1	17839	17839		42.318	12.282	1	65859			26202	5685	15059	15493	20897	20897					-0.05499507181343688
TEITDDLHFY	10	Unmodified	_TEITDDLHFY_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2878680028	2	627.287868	1252.56118	1.8838	0.0011817	1.0869	0.00068181	2.9707	0.0018635	627.2890206484292	25.853	0.1448	25.841	25.817	25.962	-0.0116	1104	109	0.9570911	0.06602925	0.95557165	387.56894	0	26.73819						273	7	4	NaN	NaN	NaN	0.15427	1	17074	17074		39.459	10.563	1	59938			26203	5685	15059	15493	20898	20898					-0.05499507181343688
TEKSRQKE	8	Unmodified	_TEKSRQKE_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.2698126354	2	503.269813	1004.52507	1.3021	0.00065532	-6.719	-0.0033815	-5.4169	-0.0027261	503.2663160225922	27.977	0.072405	27.968	27.943	28.016	-0.0089798	1215	37	0.8891654	0.022073984	0.88764596	361.03052	0	8.962769						57	4	2	NaN	NaN	NaN	0.80692	1	8592	8592		8.2903	0	1	5234.1			26204	2438	15060	15494	20899	20899					0.022990804324763303
TEKSRQKE	8	Unmodified						0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.269813	1004.52507	1.7853	0.00089846	-7.5825	-0.0038161	-5.7973	-0.0029176	503.26646295221565	27.977	0.048265	27.977	27.953	28.001	0	1215	34	0.8891654	0.020235598	0.8891654	361.03052		8.216309	0.0048797	-0.00040726	0.00075972	NaN	8.2903	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4649.4			26205	2438	15060	15494							0.022990804324763303
TELDFGGAA	9	Unmodified	_TELDFGGAA_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;nc|ENSG00000013561|Q9UBS8-2|RNF14	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4046886746	1	880.404689	879.397412	2.1628	0.0019042	-3.1375	-0.0027623	-0.97469	-0.00085812	880.4027409238795	23.634	0.048239	23.621	23.596	23.645	-0.013048	543	70	1.296287	0.04128754	1.2947675	263.6776	0	8.398285						81	3	2	NaN	NaN	NaN	0.36492	1	5665	5665		15.175	3.6269	1	4825.7			26206	430	15061	15495	20900	20900					-0.047110601615713676
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.7984028993501	2	624.798403	1247.58225	2.0437	0.0012769	-1.5121	-0.00094474	0.53158	0.00033213	624.7972233359699	23.176	0.26525	23.176	23.103	23.369	0	1167	64	0.91857195	0.03856486	0.91857195	371.98703	0	15.61731						336	12	4	NaN	NaN	NaN	0.042793	1	17710	17710		54.277	31.191	1	52688			26207	1853	15062	15496	20901	20901					-0.03163497081800415
TELERAFGYY	10	Unmodified	_TELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.7984028993501	2	624.798403	1247.58225	1.3866	0.00086634	-1.012	-0.00063228	0.37462	0.00023406	624.7979095628984	23.199	0.31368	23.186	23.114	23.427	-0.013294	1167	88	0.91857195	0.05325049	0.9170525	371.98703	0	21.564453						371	14	4	NaN	NaN	NaN	0.080496	1	16969	16969		48.65	21.919	1	59138			26208	1853	15062	15496	20902	20902					-0.03163497081800415
TELGRPDAEYW	11	Unmodified	_TELGRPDAEYW_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.81204159085	2	668.812042	1335.60953	1.7738	0.0011864	2.2084	0.001477	3.9823	0.0026634	669.3174950600055	22.163	0.21714	22.163	22.115	22.332	0	1122	73	0.9460945	0.043976784	0.9460945	382.8561	0	17.796112						344	10	4	NaN	NaN	NaN	0.11462	1	19339	19339		38.269	20.036	1	54300			26209	5601;5777	15063	15497	20903	20903					-0.0448501354144355
TELGRPDAEYW	11	Unmodified	_TELGRPDAEYW_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.81204159085	2	668.812042	1335.60953	1.2229	0.00081787	-0.88613	-0.00059266	0.33673	0.00022521	668.8118490303216	22.139	0.21706	22.125	22.101	22.318	-0.013731	1122	58	0.9460945	0.034828126	0.9445751	382.8561	0	14.093903						282	10	4	NaN	NaN	NaN	0.073935	1	18472	18472		43.765	23.251	1	40854			26210	5601;5777	15063	15497	20904	20904					-0.0448501354144355
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000273983|ENST00000614378|H3C8;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000132475|ENST00000254810|H3-3B;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.3238595786	2	493.32386	984.633166	1.6832	0.00083037	-1.04	-0.00051306	0.64322	0.00031732	493.3233712380316	19.324	0.071981	19.324	19.3	19.372	0	1260	40	0.8615505	0.023953617	0.8615505	349.91342	0	9.728577						90	4	3	NaN	NaN	NaN	0.55996	1	8048	8048		27.789	0	1	9938.2			26211	2766	15064	15498	20905	20905					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000273983|ENST00000614378|H3C8;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203811|ENST00000369158|H3C14;ENSG00000188375|ENST00000340398|H3-5;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000132475|ENST00000254810|H3-3B;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	ENST00000401004.2_1:120904811-120905087:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.3238595786	2	493.32386	984.633166	1.2425	0.00061293	-0.15062	-7.4305E-05	1.0918	0.00053863	493.3241395047495	19.466	0.072115	19.452	19.404	19.476	-0.014141	1266	37	0.85786515	0.022114575	0.8563457	348.41663	0	8.981689						81	4	3	NaN	NaN	NaN	0.65542	1	7876	7876		21.835	0	1	7218			26212	2766	15064	15498	20906	20906					0.14023496753691234
TENDIANFF	9	Unmodified	_TENDIANFF_					0	0	0		ENST00000490442.5_1_10:70098233-70101119:+|nuORF;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;nc|ENSG00000096746|P31942-4|HNRNPH3	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7430963584001	2	535.743096	1069.47164	0.78859	0.00042248	-1.5792	-0.00084607	-0.79066	-0.00042359	535.742434122551	29.714	0.16892	29.707	29.635	29.803	-0.0070648	1287	61	0.8449601	0.036877573	0.84344065	342.80002	0	14.961212						162	8	3	NaN	NaN	NaN	0.5168	1	11239	11239		8.9191	1.3315	1	15055			26213	1144	15065	15499	20907	20907					-0.060317170700500355
TENDIANFF	9	Unmodified						0	0	0		ENST00000490442.5_1_10:70098233-70101119:+|nuORF;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;nc|ENSG00000096746|P31942-4|HNRNPH3	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	ENST00000490442.5_1_10:70098233-70101119:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.743096	1069.47164	1.8228	0.00097655	-2.3509	-0.0012595	-0.52805	-0.0002829	535.7421696558689	29.715	0.096523	29.715	29.667	29.763	0	1290	61	0.84311575	0.036893547	0.84311575	342.05176		14.967682	0.0039755	-0.00044297	-0.00016247	NaN	8.9191	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10089			26214	1144	15065	15499							-0.060317170700500355
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.7738735580501	2	562.773874	1123.53319	1.7091	0.00096181	-1.6817	-0.00094642	0.027354	1.5394E-05	562.7730387806589	23.923	0.1206	23.923	23.875	23.995	0	1251	43	0.8670771	0.025783658	0.8670771	351.55756	0	10.4539795						89	6	2	NaN	NaN	NaN	0.045904	1	13819	13819		48.65	25.316	1	13494			26215	3662	15066	15500	20908	20908					-0.02363108642384759
TENDIRVMF	9	Unmodified						0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;ENST00000422993.2_1_11:47504376-47508350:-|nuORF	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.773874	1123.53319	1.5802	0.00088927	-0.53051	-0.00029856	1.0497	0.00059072	562.773685585447	23.923	0.096453	23.91	23.886	23.982	-0.013048	1245	55	0.87076044	0.0331468	0.869241	353.051		13.439423	-0.0066342	0.00060831	0.001082	NaN	48.65	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12562			26216	3662	15066	15500							-0.02363108642384759
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7562037336501	2	581.756204	1161.49785	1.3951	0.00081159	-1.3307	-0.00077417	0.064324	3.7421E-05	581.7552875744904	31.091	0.26547	31.091	31.042	31.308	0	1227	73	0.88180584	0.044152796	0.88180584	357.38766	0	17.894684						543	12	4	NaN	NaN	NaN	0.010404	1	15190	15190		91.563	38.939	1	173070			26217	2521;4694;4653	15067	15501	20909	20909					-0.07643447898567501
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1162.5051310007	1	1162.50513	1161.49785	1.9768	0.0022981	-0.26755	-0.00031102	1.7093	0.0019871	1162.504655097634	31.115	0.16894	31.115	31.066	31.235	0	60	76	1.582944	0.04415381	1.582944	320.77948	0	8.947662						261	8	3	NaN	NaN	NaN	0.032689	1	15192	15192		55.592	27.803	1	27133			26218	2521;4694;4653	15067	15501	20910	20910					-0.07643447898567501
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7562037336501	2	581.756204	1161.49785	1.5716	0.00091428	-1.2076	-0.00070253	0.36398	0.00021175	581.75527606728	31.089	0.43437	31.084	30.988	31.422	-0.0050716	1227	79	0.88180584	0.047827005	0.8802864	357.38766	0	19.38382						643	19	4	NaN	NaN	NaN	0.011693	1	14674	14674		87.778	37.817	1	192260			26219	2521;4694;4653	15067	15501	20911	20911					-0.07643447898567501
TENDIYNFF	9	Unmodified	_TENDIYNFF_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1162.5051310007	1	1162.50513	1161.49785	1.8317	0.0021293	-0.46245	-0.0005376	1.3692	0.0015917	1162.5043304944752	31.114	0.16894	31.109	31.06	31.229	-0.0050716	60	79	1.582944	0.0459224	1.5814246	320.77948	0	9.306061						260	8	3	NaN	NaN	NaN	0.012018	1	14676	14676		86.792	51.496	1	26188			26220	2521;4694;4653	15067	15501	20912	20912					-0.07643447898567501
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.8917832426667	3	486.891783	1457.65352	2.4147	0.0011757	-1.9771	-0.00096266	0.43756	0.00021305	486.8911005558187	13.685	0.16817	13.685	13.661	13.829	0	1458	43	0.7395112	0.025979817	0.7395112	448.49902	0	15.756256						213	8	4	NaN	NaN	NaN	0.6011	1	20414	20414		10.213	4.6755	1	25614			26221	3699	15068	15502	20913	20913					-0.05700029115087091
TENTEENRRFY	11	Unmodified	_TENTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.8917832426667	3	486.891783	1457.65352	1.3592	0.00066181	0.035422	1.7247E-05	1.3947	0.00067905	486.8917527626019	13.709	0.14385	13.699	13.651	13.794	-0.010672	1458	43	0.7395112	0.025977015	0.73799175	448.49902	0	15.754547						158	7	3	NaN	NaN	NaN	0.71564	1	19433	19433		4.5433	3.0178	1	23784			26222	3699	15068	15502	20914	20914					-0.05700029115087091
TEPPGARP	8	Unmodified	_TEPPGARP_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.4260928187001	1	824.426093	823.418816	1.8196	0.0015002	-9.5208	-0.0078492	-7.7011	-0.006349	824.4181069646527	30.391	0.048275	30.391	30.366	30.415	0	480	43	1.3339561	0.025084615	1.3339561	271.62384	0	5.107788						65	3	2	NaN	NaN	NaN	0.72043	1	5065	5065		17.78	4.0433	1	7537.7			26223	4042	15069	15503	20915	20915					4.369657813185768E-05
TEPVVLPVI	9	Unmodified	_TEPVVLPVI_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.5870101366	1	966.58701	965.579734	1.0428	0.0010079	0.65368	0.00063184	1.6965	0.0016398	966.5877947490297	31.018	0.26547	31.018	30.922	31.187	0	237	58	1.4784646	0.033745885	1.4784646	300.32062	0	6.854828						299	12	3	NaN	NaN	NaN	0.078597	1	7512	7512		38.918	2.3314	1	27207			26224	8009	15070	15504	20916	20916					0.09556699251186274
TEQDSKDSTY	10	Unmodified	_TEQDSKDSTY_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.2489398075501	2	587.24894	1172.48333	2.0236	0.0011884	-1.7344	-0.0010185	0.28924	0.00016986	587.247698406992	11.788	0.071989	11.788	11.74	11.812	0	1269	34	0.8560222	0.020272791	0.8560222	346.89966	0	8.215485						64	4	2	NaN	NaN	NaN	0.37846	1	15558	15558		24.493	10.068	1	6277.6			26225	8022	15071	15505	20917	20917					-0.09601564837362275
TEQDSKDSTY	10	Unmodified						0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.24894	1172.48333	1.812	0.0010641	-2.1012	-0.0012339	-0.28922	-0.00016984	587.2472823289191	11.958	0.11994	11.95	11.95	12.07	-0.0081854	1269	25	0.8560222	0.01474303	0.85450274	346.89966		5.9745483	0.081015	-0.00030787	-0.00075972	NaN	24.493	56	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3508.5			26226	8022	15071	15505							-0.09601564837362275
TEQSQIKGYVW	11	Unmodified	_TEQSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8380593761001	2	669.838059	1337.66157	1.5264	0.0010225	-1.9488	-0.0013054	-0.42238	-0.00028293	669.83688616855	21.44	0.19279	21.44	21.392	21.585	0	1107	61	0.9552588	0.03665918	0.9552588	386.55856	0	14.834625						320	9	4	NaN	NaN	NaN	0.031468	1	19369	19369		69.574	50.41	1	45105			26227	5918	15072	15506	20918	20918					0.006241498723284167
TEQSQIKGYVW	11	Unmodified	_TEQSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8380593761001	2	669.838059	1337.66157	1.4701	0.00098475	-1.0842	-0.00072625	0.38592	0.00025851	669.8372877928948	21.44	0.14459	21.426	21.402	21.547	-0.014006	1110	67	0.95342636	0.040320754	0.9519069	385.81702	0	16.316345						286	7	3	NaN	NaN	NaN	0.0088542	1	18503	18503		85.741	65.228	1	45900			26228	5918	15072	15506	20919	20919					0.006241498723284167
TERIYSLFNLY	11	Unmodified	_TERIYSLFNLY_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.8693595045002	2	709.86936	1417.72417	0.82431	0.00058515	-0.64658	-0.00045898	0.17774	0.00012617	709.8677773553089	30.245	0.096485	30.238	30.214	30.311	-0.0064106	1038	43	0.997351	0.025584042	0.9958316	403.35858	0	10.346985						116	5	3	NaN	NaN	NaN	0.67772	1	19246	19246		8.9191	0	1	11088			26229	5448	15073	15507	20920	20920					0.032012959405392394
TERIYSLFNLY	11	Unmodified						0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	709.86936	1417.72417	1.2831	0.00091086	0.52775	0.00037464	1.8109	0.0012855	709.8701865370134	30.246	0.096518	30.246	30.222	30.318	0	1038	40	0.997351	0.02376312	0.997351	403.35858		9.610474	0.0036904	0.00077571	0.00075972	NaN	8.9191	127	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11079			26230	5448	15073	15507							0.032012959405392394
TERQADRQ	8	Unmodified	_TERQADRQ_					0	0	0			REV__nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	REV__nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.491546622	1	1003.49155	1002.48427	1.6366	0.0016423	-4.0186	-0.0040326	-2.382	-0.0023903	1004.4915858926677	24.044	0.19302	24.044	23.947	24.14	0	246	82	1.4731345	0.047985315	1.4731345	299.08292	0	9.742218						276	9	3	NaN	NaN	NaN	0.7718	1	8687	8687		13.003	0	1	16572	+		26231	13240	15074	15508	20921	20921					-0.016872608871494776
TETTIVITW	9	Unmodified	_TETTIVITW_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1063.567002976	1	1063.567	1062.55973	2.1178	0.0022524	-0.17688	-0.00018812	1.9409	0.0020643	1063.567301512749	30.029	0.048273	30.029	30.004	30.053	0	162	76	1.5228153	0.04428029	1.5228153	308.93213	0	8.983093						79	3	2	NaN	NaN	NaN	0.056143	1	11243	11243		44.302	26.503	1	9445.1			26232	2021	15075	15509	20922	20922					0.030949035205594555
TETTIVITW	9	Unmodified	_TETTIVITW_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.567002976	1	1063.567	1062.55973	1.3581	0.0014444	1.2317	0.00131	2.5898	0.0027544	1063.5679015650628	30.028	0.048262	30.021	29.997	30.045	-0.0064106	156	55	1.5263584	0.03188348	1.5248389	309.65088	0	6.46817						63	3	2	NaN	NaN	NaN	0.14301	1	10990	10990		29.598	14.136	1	6000.9			26233	2021	15075	15509	20923	20923					0.030949035205594555
TEVLHPKHS	9	Unmodified	_TEVLHPKHS_					0	0	0			REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	349.8575741858	3	349.857574	1046.55089	1.7126	0.00059916	-0.9161	-0.00032051	0.79648	0.00027865	349.8574576508295	13.252	0.12013	13.252	13.228	13.349	0	1548	37	0.6837494	0.022338688	0.6837494	416.206	0	13.597778						79	6	2	NaN	NaN	NaN	0.66529	1	10494	10494		1.04	0	1	6432	+		26234	12654	15076	15510	20924	20924					0.02947974674748366
TEVTGHRW	8	Unmodified	_TEVTGHRW_					0	0	0		nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None	nc|ENSG00000172270|P35613-2|BSG	nc|ENSG00000172270|P35613-2|BSG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.24614057384997	2	493.246141	984.477728	0.63502	0.00031322	1.6367	0.00080732	2.2718	0.0011205	493.2460790548917	12.846	0.26386	12.837	12.717	12.98	-0.00947	1344	58	0.8098828	0.035103858	0.8083634	328.9296	0	14.257263						328	12	4	NaN	NaN	NaN	0.43738	1	7853	7853		34.439	8.3238	1	35728			26235	4833	15077	15511	20925	20925					-0.015131540478705574
TEVVACSVDSQ	11	Unmodified	_TEVVACSVDSQ_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2582532836	2	569.258253	1136.50195	0.94507	0.00053799	-1.9684	-0.0011205	-1.0234	-0.00058256	569.2583678271669	27.228	0.24135	27.218	27.17	27.411	-0.010124	1257	88	0.86339295	0.053400338	0.8618735	350.01538	0	21.648224						365	11	5	NaN	NaN	NaN	0.63477	1	13853	13853		11.739	1.9929	1	50573			26236	2359	15078	15512	20926	20926					-0.06083726467181805
TEYERDPHET	10	Unmodified	_TEYERDPHET_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.1861962118999	3	426.186196	1275.53676	0.93553	0.00039871	-7.526	-0.0032075	-6.5904	-0.0028088	426.18359113089895	35.239	0.096519	35.239	35.191	35.287	-4.1962E-05	1452	52	0.74322224	0.03154522	0.7417028	451.3534	0	19.157196						85	5	3	NaN	NaN	NaN	0.76053	1	17513	17513		3.9087	1.2045	1	5307	+		26237	10736	15079	15513	20927	20927					-0.08998767334878721
TFAEAGGP	8	Unmodified	_TFAEAGGP_					0	0	0		ENST00000591097.5_1_19:1271671-1272439:+|nuORF	ENST00000591097.5_1_19:1271671-1272439:+|nuORF	ENST00000591097.5_1_19:1271671-1272439:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3464455142001	1	749.346446	748.339169	2.053	0.0015384	4.4692	0.003349	6.5222	0.0048874	749.3494230617141	25.901	0.14478	25.901	25.853	25.998	0	567	103	1.2819146	0.06114781	1.2819146	261.45633	0	12.471573						288	7	3	NaN	NaN	NaN	0.77489	1	4020	4020		12.588	0	1	40326			26238	7729	15080	15514	20928	20928					-0.04506697016176986
TFAEDMATQI	10	Unmodified	_TFAEDMATQI_					0	0	0			REV__nc|ENSG00000132031|O15232-2|MATN3	REV__nc|ENSG00000132031|O15232-2|MATN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7578891428501	2	563.757889	1125.50123	2.0033	0.0011294	-4.1797	-0.0023563	-2.1765	-0.001227	563.7569895754635	21.705	0.16864	21.705	21.633	21.802	0	1236	64	0.876284	0.038660824	0.876284	355.28302	0	15.674744						302	8	3	NaN	NaN	NaN	0.56921	1	13889	13889		16.584	0	1	43479	+		26239	9525	15081	15515	20929	20929					-0.056505211161947955
TFASGHAS	8	Unmodified	_TFASGHAS_					0	0	0			REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.3525935246	1	777.352594	776.345317	2.0403	0.001586	-9.6089	-0.0074695	-7.5686	-0.0058834	777.3450077777413	26.36	0.1448	26.36	26.336	26.481	0	543	55	1.296287	0.032324076	1.296287	264.21606	0	6.58844						197	7	3	NaN	NaN	NaN	0.69631	1	4444	4444		19.285	5.5477	1	19320	+		26240	12162	15082	15516	20930	20930					-0.05180178784667078
TFASGHAS	8	Unmodified	_TFASGHAS_					0	0	0			REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	777.3525935246	1	777.352594	776.345317	1.7228	0.0013392	-8.7475	-0.0067999	-7.0247	-0.0054607	777.3457232479799	26.36	0.14479	26.349	26.324	26.469	-0.011135	540	61	1.2980826	0.035915613	1.2965631	264.58206	0	7.3204956						164	7	2	NaN	NaN	NaN	0.80071	1	4370	4370		9.1232	0	1	19239	+		26241	12162	15082	15516	20931	20931					-0.05180178784667078
TFASGHAS	8	Unmodified						0	0	0			REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	777.352594	776.345317	2.0403	0.001586	-9.6089	-0.0074695	-7.5686	-0.0058834	777.3450077777413	26.36	0.1448	26.36	26.336	26.481	0	543	55	1.296287	0.032324076	1.296287	264.21606		6.58844	0.0057116	-0.00038026	-0.00013812	NaN	19.285	197	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19320	+		26242	12162	15082	15516							-0.05180178784667078
TFASGHAS	8	Unmodified						0	0	0			REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	REV__ENST00000432413.2_1_2:208104937-208105045:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	777.352594	776.345317	1.7228	0.0013392	-8.7475	-0.0067999	-7.0247	-0.0054607	777.3457232479799	26.36	0.14479	26.349	26.324	26.469	-0.011135	540	61	1.2980826	0.035915613	1.2965631	264.58206		7.3204956	-0.0057116	0.00028932	0.00013812	NaN	19.285	164	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19239	+		26243	12162	15082	15516							-0.05180178784667078
TFAVTDELVF	10	Unmodified	_TFAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2924220644501	2	571.292422	1140.57029	1.3495	0.00077097	-1.8833	-0.0010759	-0.53383	-0.00030497	571.2912802510756	32.756	0.14476	32.756	32.707	32.852	0	1218	70	0.8873258	0.042301655	0.8873258	359.70227	0	17.148163						228	7	3	NaN	NaN	NaN	0.29898	1	14468	14468		27.789	9.9898	1	34888			26244	1356	15083	15517	20932	20932					0.005628861749983116
TFAVTDELVF	10	Unmodified	_TFAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1141.5775676623	1	1141.57757	1140.57029	1.4784	0.0016877	0.078478	8.9589E-05	1.5569	0.0017773	1141.5770652222527	32.755	0.21716	32.752	32.679	32.896	-0.0031013	57	106	1.5847093	0.061828494	1.5831898	321.20645	0	12.532074						389	10	4	NaN	NaN	NaN	0.0057295	1	14004	14004		76.739	42.3	1	48457			26245	1356	15083	15517	20933	20933					0.005628861749983116
TFDAGLQAF	9	Unmodified	_TFDAGLQAF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4676232824	1	969.467623	968.460347	1.8059	0.0017507	5.6613	0.0054885	7.4672	0.0072392	969.4669675978007	27.471	0.21723	27.471	27.422	27.639	0	252	109	1.4695803	0.06403828	1.4695803	298.50345	0	13.007568						537	10	3	NaN	NaN	NaN	0.023828	1	7559	7559		67.154	39.365	1	71123			26246	5722	15084	15518	20934	20934					-0.025144943735199377
TFDAQIVII	9	Unmodified	_TFDAQIVII_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.29222509920004	2	510.292225	1018.5699	1.3597	0.00069385	-1.1242	-0.00057365	0.23556	0.00012021	510.29222095442077	32.032	0.072384	32.032	32.008	32.08	0	1284	46	0.8468043	0.027659655	0.8468043	343.76642	0	11.228638						74	4	2	NaN	NaN	NaN	0.036546	1	9329	9329		52.624	15.322	1	7672.1			26247	1432	15085	15519	20935	20935					0.061355112458159056
TFDAQIVII	9	Unmodified	_TFDAQIVII_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.29222509920004	2	510.292225	1018.5699	0.58521	0.00029863	-2.0573	-0.0010498	-1.472	-0.00075117	510.29121862579495	32.031	0.12068	32.027	31.979	32.099	-0.0037613	1284	49	0.8468043	0.029502094	0.8452849	343.76642	0	11.976593						117	6	3	NaN	NaN	NaN	0.036546	1	9136	9136		52.624	18.185	1	10674			26248	1432	15085	15519	20936	20936					0.061355112458159056
TFDDIVHSF	9	Unmodified	_TFDDIVHSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.75346407945	2	540.753464	1079.49238	1.9521	0.0010556	0.10359	5.6018E-05	2.0557	0.0011116	540.7536396760074	26.384	0.096537	26.384	26.36	26.456	0	1260	94	0.8615505	0.05713862	0.8615505	349.48947	0	23.178375						157	5	2	NaN	NaN	NaN	0.23112	1	11945	11945		23.334	9.2928	1	25945			26249	4687	15086	15520	20937	20937					-0.044191266903681026
TFDDLPARF	9	Unmodified	_TFDDLPARF_					0	0	0		ENSG00000082996|ENST00000392894|RNF13;ENST00000491086.5_1_3:149531035-149619859:+|nuORF	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.26928131915	2	541.269281	1080.52401	1.303	0.00070527	1.9307	0.001045	3.2336	0.0017503	541.2710810769404	24.333	0.21724	24.32	24.248	24.465	-0.012749	1245	67	0.87076044	0.040530264	0.869241	353.22125	0	16.440948						248	10	4	NaN	NaN	NaN	0.44082	1	11684	11684		12.049	5.0643	1	24334			26250	940	15087	15521	20938	20938					-0.013031339364488304
TFDDVAVTF	9	Unmodified	_TFDDVAVTF_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4778536177	1	1014.47785	1013.47058	1.9843	0.0020131	0.47041	0.00047722	2.4547	0.0024903	1014.4790385208996	28.725	0.1448	28.725	28.701	28.846	0	219	58	1.4891195	0.033728123	1.4891195	302.28378	0	6.8466187						214	7	3	NaN	NaN	NaN	0.062072	1	9114	9114		41.785	15.053	1	28778			26251	951	15088	15522	20939	20939					-0.03561931438946431
TFDDVAVTF	9	Unmodified	_TFDDVAVTF_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4778536177	1	1014.47785	1013.47058	1.4639	0.0014851	0.55767	0.00056575	2.0216	0.0020509	1014.4785031682364	28.749	0.12065	28.74	28.692	28.813	-0.0083504	219	61	1.4891195	0.035497546	1.4876001	302.28378	0	7.2058105						182	6	3	NaN	NaN	NaN	0.025843	1	8935	8935		64.55	27.963	1	26198			26252	951	15088	15522	20940	20940					-0.03561931438946431
TFDGHGVFF	9	Unmodified	_TFDGHGVFF_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.7376170500002	2	513.737617	1025.46068	2.3521	0.0012083	-4.1672	-0.0021408	-1.8151	-0.00093249	513.7350902342422	25.66	0.19304	25.66	25.612	25.805	0	1302	43	0.8357362	0.025831044	0.8357362	339.24286	0	10.485382						182	9	3	NaN	NaN	NaN	0.12945	1	9587	9587		31.561	11.112	1	22489			26253	4554	15089	15523	20941	20941					-0.05103074653652584
TFDGHGVFF	9	Unmodified	_TFDGHGVFF_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	513.7376170500002	2	513.737617	1025.46068	1.7754	0.00091209	-1.2624	-0.00064854	0.51299	0.00026354	513.7369953482263	25.66	0.19303	25.648	25.624	25.817	-0.011602	1299	61	0.8375814	0.036893547	0.83606195	339.99185	0	14.975861						213	9	3	NaN	NaN	NaN	0.20577	1	9400	9400		24.961	8.5444	1	27274			26254	4554	15089	15523	20942	20942					-0.05103074653652584
TFDIASDAF	9	Unmodified	_TFDIASDAF_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.4465534893001	1	986.446553	985.439277	2.1726	0.0021432	-0.90917	-0.00089684	1.2634	0.0012463	986.4453489236945	28.243	0.1689	28.243	28.194	28.363	0	309	67	1.435777	0.039176106	1.435777	291.56677	0	7.9555664						231	8	3	NaN	NaN	NaN	0.055351	1	8052	8052		44.638	10.2	1	28977			26255	1383	15090	15524	20943	20943					-0.054025044730451555
TFDIASDAF	9	Unmodified	_TFDIASDAF_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.4465534893001	1	986.446553	985.439277	1.3896	0.0013708	-0.34461	-0.00033994	1.045	0.0010308	986.4459839863698	28.242	0.14476	28.233	28.209	28.354	-0.0089779	306	67	1.4375578	0.039176106	1.4360384	291.9284	0	7.9555664						238	7	3	NaN	NaN	NaN	0.0023856	1	7880	7880		109.86	70.94	1	29731			26256	1383	15090	15524	20944	20944					-0.054025044730451555
TFDIDVYPQF	10	Unmodified	_TFDIDVYPQF_					0	0	0		tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.79532889415	2	622.795329	1243.5761	0.89388	0.0005567	-7.3225	-0.0045604	-6.4286	-0.0040037	623.2908260201814	24.357	0.28971	24.344	24.224	24.513	-0.012747	1146	94	0.93142134	0.05686772	0.9299019	377.2039	0	23.03009						385	13	4	NaN	NaN	NaN	0.25724	1	16873	16873		30.61	6.2099	1	45553			26257	13945	15091	15525	20945	20945					-0.035940153133424246
TFDIEWRGG	9	Unmodified	_TFDIEWRGG_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7590807736001	2	540.759081	1079.50361	1.4365	0.00077678	-9.726	-0.0052594	-8.2896	-0.0044827	540.7535791979847	26.384	0.12066	26.373	26.349	26.469	-0.011137	1263	58	0.85970795	0.03500533	0.8581885	348.74203	0	14.199951						215	6	4	NaN	NaN	NaN	0.13602	1	11643	11643		30.61	2.8213	1	24469	+		26258	13017	15092	15526	20946	20946					-0.032963045962333126
TFDIEWRGG	9	Unmodified						0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|96|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.759081	1079.50361	1.4365	0.00077678	-9.726	-0.0052594	-8.2896	-0.0044827	540.7535791979847	26.384	0.12066	26.373	26.349	26.469	-0.011137	1263	58	0.85970795	0.03500533	0.8581885	348.74203		14.199951	-0.0057035	0.00039113	-0.001681	NaN	30.61	215	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24469	+		26259	13017	15092	15526							-0.032963045962333126
TFDILNAEN	9	Unmodified	_TFDILNAEN_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4945663144	1	1036.49457	1035.48729	1.6205	0.0016796	-8.7013	-0.0090188	-7.0808	-0.0073392	1036.486165479827	24.985	0.072403	24.985	24.96	25.033	0	228	109	1.4837929	0.06388891	1.4837929	301.11658	0	12.965424						113	4	2	NaN	NaN	NaN	0.2961	1	10002	10002		19.164	0	1	9210.2	+		26260	9976	15093	15527	20947	20947					-0.029034305530103666
TFDLQRIGF	9	Unmodified	_TFDLQRIGF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7929235909501	2	548.792924	1095.57129	1.4119	0.00077482	-2.8195	-0.0015473	-1.4076	-0.0007725	548.7915133738896	27.422	0.16899	27.422	27.374	27.543	0	1242	91	0.87260187	0.055244684	0.87260187	353.907	0	22.405975						408	8	4	NaN	NaN	NaN	0.0092442	1	12658	12658		93.929	14.73	1	118390			26261	7920	15094	15528	20948	20948					0.027331453345595946
TFDLQRIGF	9	Unmodified	_TFDLQRIGF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7929235909501	2	548.792924	1095.57129	1.2917	0.00070889	-1.972	-0.0010822	-0.6803	-0.00037334	548.7921149113727	27.446	0.24133	27.436	27.387	27.629	-0.010126	1239	88	0.87444305	0.053400338	0.8729236	354.65375	0	21.657898						497	11	4	NaN	NaN	NaN	0.013959	1	12332	12332		80.901	22.701	1	127930			26262	7920	15094	15528	20949	20949					0.027331453345595946
TFDLTVVSY	9	Unmodified	_TFDLTVVSY_					0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.5248038103	1	1044.5248	1043.51753	1.3381	0.0013977	-1.1486	-0.0011997	0.18953	0.00019797	1044.5255759081913	29.4	0.26541	29.393	29.344	29.61	-0.0077209	144	103	1.533442	0.06018603	1.5319226	311.1607	0	12.212769						542	12	4	NaN	NaN	NaN	0.028349	1	10147	10147		61.271	19.487	1	91426			26263	2590	15095	15529	20950	20950					-0.0024907188781071454
TFDNRSAASW	10	Unmodified	_TFDNRSAASW_					0	0	0			REV__ENST00000486641.2_1_9:15874547-16020617:+|nuORF	REV__ENST00000486641.2_1_9:15874547-16020617:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.764894433	2	577.764894	1153.51524	2.187	0.0012636	1.3703	0.00079173	3.5574	0.0020553	577.7654808703088	16.706	0.071852	16.693	16.693	16.765	-0.013294	1260	40	0.8615505	0.023953617	0.8600311	349.20673	0	9.708954						65	4	3	NaN	NaN	NaN	0.77251	1	14416	14416		2.3381	0.4135	1	4053.8	+		26264	12428	15096	15530	20951	20951					-0.05538107572920126
TFDNVTSYL	9	Unmodified	_TFDNVTSYL_					0	0	0		nc|ENSG00000160193|P57081-3|WDR4;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4	nc|ENSG00000160193|P57081-3|WDR4	nc|ENSG00000160193|P57081-3|WDR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.4993173413	1	1059.49932	1058.49204	1.9909	0.0021094	-0.74773	-0.00079222	1.2432	0.0013172	1059.4982120934276	27.905	0.096537	27.905	27.881	27.977	0	189	64	1.5068626	0.037234902	1.5068626	305.71088	0	7.5541687						111	5	2	NaN	NaN	NaN	0.01452	1	11010	11010		79.199	43.902	1	14259			26265	4049	15097	15531	20952	20952					-0.03486546410226765
TFDPAALL	8	Unmodified	_TFDPAALL_					0	0	0		RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant;ENSG00000198771|ENST00000367854|RCSD1	RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	847.4559959636	1	847.455996	846.448719	1.1705	0.00099195	-0.12152	-0.00010298	1.049	0.00088897	847.4556780630795	31.815	0.096512	31.815	31.79	31.887	0	402	40	1.3804773	0.02322483	1.3804773	280.97104	0	4.7269897						80	5	2	NaN	NaN	NaN	0.40747	1	5346	5346		36.036	7.3698	1	5109.7			26266	5806	15098	15532	20953	20953					0.01935308603140129
TFDPAALL	8	Unmodified	_TFDPAALL_					0	0	0		RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant;ENSG00000198771|ENST00000367854|RCSD1	RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.4559959636	1	847.455996	846.448719	0.56379	0.00047779	1.6876	0.0014302	2.2514	0.001908	847.4581411546136	31.813	0.096575	31.809	31.761	31.857	-0.0044155	396	43	1.3840506	0.025012612	1.3825312	281.6983	0	5.0908813						86	5	2	NaN	NaN	NaN	0.40747	1	5210	5210		36.036	0	1	6962			26267	5806	15098	15532	20954	20954					0.01935308603140129
TFDSLSLSIP	10	Unmodified	_TFDSLSLSIP_					0	0	0		ENSG00000135093|ENST00000257548|USP30;ENST00000467307.1_1_12:109509452-109519261:+|nuORF	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2845970323501	2	540.284597	1078.55464	1.708	0.0009228	7.5574	0.0040831	9.2654	0.0050059	540.7894443545194	54.524	0.072334	54.524	54.5	54.572	0	1248	37	0.8689189	0.022102654	0.8689189	352.4823	0	8.966064						105	4	3	NaN	NaN	NaN	0.76548	1	11920	11920		3.5698	0.41644	1	9889			26268	2916	15099	15533	20955	20955					0.01850599657973362
TFDSLSLSIP	10	Unmodified						0	0	0		ENSG00000135093|ENST00000257548|USP30;ENST00000467307.1_1_12:109509452-109519261:+|nuORF	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.284597	1078.55464	0.11453	6.1879E-05	6.3017	0.0034047	6.4162	0.0034666	540.7896116339808	54.522	0.0723	54.521	54.497	54.569	-0.0006218	1248	25	0.8689189	0.014733493	0.86739945	352.4823		5.976715	-0.0013694	-0.00074748	-0.00075972	NaN	3.5698	67	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3776			26269	2916	15099	15533							0.01850599657973362
TFDVAPSRL	9	Unmodified	_TFDVAPSRL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.27182400810005	2	503.271824	1004.5291	1.4805	0.0007451	2.7811	0.0013996	4.2616	0.0021447	503.27326823695904	21.007	0.21657	21.007	20.887	21.103	0	1305	70	0.83389086	0.042439044	0.83389086	338.58716	0	17.231659						291	10	2	NaN	NaN	NaN	0.2961	1	8770	8770		19.164	2.5794	1	49306			26270	1423	15100	15534	20956	20956					0.027011699261947797
TFDVAPSRL	9	Unmodified	_TFDVAPSRL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.27182400810005	2	503.271824	1004.5291	0.90505	0.00045549	2.7984	0.0014084	3.7034	0.0018638	503.27351890735486	21.031	0.14445	21.017	20.945	21.089	-0.014086	1299	67	0.8375814	0.040596068	0.83606195	340.08566	0	16.483337						209	7	2	NaN	NaN	NaN	0.064504	1	8596	8596		40.957	14.842	1	39320			26271	1423	15100	15534	20957	20957					0.027011699261947797
TFDVAPSRLDF	11	Unmodified	_TFDVAPSRLDF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3195024822	2	634.319502	1266.62445	2.1741	0.0013791	-7.179	-0.0045538	-5.0049	-0.0031747	634.3155287957711	25.853	0.14482	25.841	25.793	25.938	-0.0116	1128	82	0.9424274	0.04951924	0.94090796	381.5848	0	20.05014						176	7	3	NaN	NaN	NaN	0.65737	1	17344	17344		17.582	8.0113	1	21028			26272	1423	15101	15535	20958	20958					0.0018047832656975515
TFDVNEFD	8	Unmodified	_TFDVNEFD_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.7087222248	2	493.708722	985.402892	0.90557	0.00044709	8.4723	0.0041829	9.3779	0.0046299	493.7129921022701	31.115	0.12066	31.115	31.066	31.187	0	1341	55	0.8117308	0.033254504	0.8117308	329.67584	0	13.505981						110	6	2	NaN	NaN	NaN	0.7718	1	8050	8050		13.003	3.8796	1	8898.4			26273	2453	15102	15536	20959	20959					-0.09039381369746025
TFDVNEFD	8	Unmodified						0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.708722	985.402892	0.76131	0.00037587	11.687	0.0057699	12.448	0.0061458	493.7145034883449	31.089	0.14481	31.084	31.012	31.157	-0.0050716	1338	61	0.81357855	0.036937475	0.8120591	330.42627		15.00177	-0.015112	0.0016061	0.00016417	NaN	13.003	128	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10841			26274	2453	15102	15536							-0.09039381369746025
TFDVSLLTI	9	Unmodified	_TFDVSLLTI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5611893166002	1	1008.56119	1007.55391	1.7502	0.0017652	0.29592	0.00029845	2.0461	0.0020637	1008.5612601236573	34.3	0.26527	34.3	34.228	34.493	0	168	160	1.5192716	0.093973875	1.5192716	308.42883	0	19.077728						688	12	4	NaN	NaN	NaN	0.01047	1	8900	8900		91.429	0	1	189080			26275	540	15103	15537	20960	20960					0.050438050089155695
TFDVSLLTI	9	Unmodified	_TFDVSLLTI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5611893166002	1	1008.56119	1007.55391	1.6469	0.001661	-0.46676	-0.00047076	1.1802	0.0011903	1008.560848515179	34.299	0.21687	34.298	34.249	34.466	-0.0012474	165	142	1.5210435	0.083308816	1.5195241	308.78854	0	16.912598						648	10	4	NaN	NaN	NaN	0.011942	1	8729	8729		87.021	0	1	189390			26276	540	15103	15537	20961	20961					0.050438050089155695
TFEAPSAP	8	Unmodified	_TFEAPSAP_					0	0	0			REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.3883103289	1	819.38831	818.381034	1.408	0.0011537	4.6698	0.0038264	6.0779	0.0049801	819.3928326554864	30.221	0.096485	30.214	30.214	30.311	-0.0064106	489	37	1.3285799	0.021508098	1.3270605	270.5564	0	4.3799744						85	5	2	NaN	NaN	NaN	0.79379	1	4889	4889		10.052	3.9612	1	6639.2	+		26277	11938	15104	15538	20962	20962					-0.03542141327659465
TFEAPSAP	8	Unmodified						0	0	0			REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	819.38831	818.381034	2.0924	0.0017145	4.3014	0.0035245	6.3938	0.005239	819.3917618949969	30.222	0.12063	30.222	30.198	30.318	0	492	49	1.3267875	0.028674245	1.3267875	270.1914		5.839325	0.0036873	-0.00016261	-0.0001365	NaN	10.052	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6259.6	+		26278	11938	15104	15538							-0.03542141327659465
TFEAPSAP	8	Unmodified						0	0	0			REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	REV__ENST00000376113.6_2_2:127805867-127806032:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.38831	818.381034	1.408	0.0011537	4.6698	0.0038264	6.0779	0.0049801	819.3928326554864	30.221	0.096485	30.214	30.214	30.311	-0.0064106	489	37	1.3285799	0.021508098	1.3270605	270.5564		4.3799744	-0.0036873	0.00013928	0.0001365	NaN	10.052	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6639.2	+		26279	11938	15104	15538							-0.03542141327659465
TFEDVAVYF	9	Unmodified	_TFEDVAVYF_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316;nc|ENSG00000105136|Q96HQ0-3|ZNF419;ENSG00000186376|ENST00000370766|ZNF75D;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419;nc|ENSG00000121417|Q13398-6|ZNF211;ENSG00000249471|ENST00000336614|ZNF324B;nc|ENSG00000121417|Q13398|ZNF211;nc|ENSG00000105136|Q96HQ0-4|ZNF419;nc|ENSG00000121417|Q13398-4|ZNF211;ENSG00000177873|ENST00000432264|ZNF619;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000177873|Q8N2I2-4|ZNF619;nc|ENSG00000121417|Q13398-8|ZNF211;ENSG00000167377|ENST00000647773|ZNF23;ENSG00000131849|ENST00000254166|ZNF132;nc|ENSG00000121417|Q13398-3|ZNF211;ENST00000314686.9_1_3:40519470-40525181:+|nuORF;ENSG00000177842|ENST00000314529|ZNF620;nc|ENSG00000105136|Q96HQ0-6|ZNF419;ENST00000490457.5_1_3:40567331-40615968:+|nuORF;ENST00000523439.1_1_19:57999318-58003198:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ZNF211|p.P162Lfs*52|1|0.33|ENSG00000121417|chr19:57640971-57640972|CT/-|frameshift_variant;ZNF773|p.A199Pfs*41|1|0.29|ENSG00000152439|chr19:57506687-57506687|A/-|frameshift_variant;ZNF211|p.C318Qfs*7|1|0.07|ENSG00000121417|chr19:57641437-57641438|-/CAAG|frameshift_variant;ZNF620|p.F112Sfs*5|1|0.08|ENSG00000177842|chr3:40515926-40515927|-/AAGTG|frameshift_variant;nc|ENSG00000186376|P51815-2|ZNF75D;ZNF132|p.R429Kfs*4|1|0.1|ENSG00000131849|chr19:58434158-58434159|-/T|frameshift_variant;ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000152439|Q6PK81-2|ZNF773;ENSG00000152439|ENST00000282292|ZNF773;nc|ENSG00000182983|Q6ZS27-3|ZNF662;ENST00000487620.1_1_7:99668768-99673049:-|nuORF;nc|ENSG00000105136|Q96HQ0-2|ZNF419;ENSG00000152454|ENST00000282308|ZNF256;nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3	ENSG00000205903|ENST00000382252|ZNF316;ENSG00000152454|ENST00000282308|ZNF256;nc|ENSG00000166526|P17036-2|ZNF3	ENSG00000205903|ENST00000382252|ZNF316	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5091537460999	1	1090.50915	1089.50188	1.4145	0.0015425	2.489	0.0027143	3.9035	0.0042568	1090.5135330188427	31.549	0.14487	31.549	31.525	31.67	0	90	100	1.5652816	0.058338642	1.5652816	317.4465	0	11.83136						316	7	3	NaN	NaN	NaN	0.03623	1	12368	12368		52.758	10.974	1	32176			26280	5937;3774;4490	15105	15539	20963	20963					-0.03929358404866434
TFGAAGSH	8	Unmodified	_TFGAAGSH_					0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3420288383	1	747.342029	746.334752	1.4232	0.0010636	-9.6582	-0.007218	-8.235	-0.0061544	747.3341681290894	31.017	0.21721	31.012	30.964	31.181	-0.0050716	600	70	1.2621325	0.04138899	1.2606131	257.43414	0	8.442017						360	10	3	NaN	NaN	NaN	0.76633	1	3913	3913		13.737	0	1	59021	+		26281	13443	15106	15540	20964	20964					-0.04856161439090556
TFGAAGSH	8	Unmodified						0	0	0			REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	REV__tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	747.342029	746.334752	1.4232	0.0010636	-9.6582	-0.007218	-8.235	-0.0061544	747.3341681290894	31.017	0.21721	31.012	30.964	31.181	-0.0050716	600	70	1.2621325	0.04138899	1.2606131	257.43414		8.442017	-0.015115	6.9284E-05	-0.00075972	NaN	13.737	360	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59021	+		26282	13443	15106	15540							-0.04856161439090556
TFGQNECHDP	10	Unmodified	_TFGQNECHDP_					0	0	0		nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	nc|ENSG00000183117|Q96PZ7-4|CSMD1	nc|ENSG00000183117|Q96PZ7-4|CSMD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.15395049299997	3	383.15395	1146.44002	2.1686	0.00083092	4.0377	0.0015471	6.2064	0.002378	383.4895644677286	26.07	0.24134	26.059	26.011	26.252	-0.011137	1491	70	0.7190863	0.042729795	0.71756685	437.22122	0	25.980743						420	11	5	NaN	NaN	NaN	0.70677	1	14179	14179		6.1406	1.5232	1	75934			26283	5295	15107	15541	20965	20965					-0.12734033095648556
TFHTCCDVAFC	11	Unmodified	_TFHTCCDVAFC_					0	0	0		ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146383|ENST00000275198|TAAR6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.1611716328333	3	416.161172	1245.46169	1.6783	0.00069845	3.0817	0.0012825	4.7601	0.001981	416.16244093646935	23.778	0.096361	23.778	23.73	23.827	0	1500	37	0.71351165	0.02230227	0.71351165	433.4222	0	13.547516						80	5	3	NaN	NaN	NaN	0.77378	1	17642	17642		0.38034	0	1	5454.5			26284	3563	15108	15542	20966	20966					-0.15122687662938006
TFHVLIYGW	9	Unmodified	_TFHVLIYGW_					0	0	0		nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.3003844823	2	568.300384	1134.58622	1.8	0.0010229	-0.36984	-0.00021018	1.4301	0.00081275	568.2999835054579	28.653	0.19303	28.653	28.605	28.798	0	1212	61	0.8910048	0.036790013	0.8910048	361.2164	0	14.914764						258	9	3	NaN	NaN	NaN	0.024986	1	14273	14273		65.672	18.536	1	48234			26285	3949	15109	15543	20967	20967					0.02430637202564867
TFHVLIYGW	9	Unmodified						0	0	0		nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.300384	1134.58622	1.0002	0.00056841	-0.33268	-0.00018906	0.66752	0.00037935	568.3006584127972	28.652	0.33782	28.644	28.572	28.909	-0.0083485	1209	64	0.892844	0.038623214	0.8913246	361.96204		15.6579895	-0.0045666	2.07E-05	0.00015988	NaN	65.672	367	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53033			26286	3949	15109	15543							0.02430637202564867
TFIFPVLL	8	Unmodified	_TFIFPVLL_					0	0	0		ENST00000568126.5_1_16:19729746-19775223:+|nuORF;nc|ENSG00000174628|Q8N0W5-2|IQCK;nc|ENSG00000174628|Q8N0W5-3|IQCK;ENST00000564515.5_1_16:19729628-19746934:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19729746-19775223:+|nuORF	ENST00000568126.5_1_16:19729746-19775223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.2914968177001	2	475.291497	948.568441	1.1885	0.0005649	-6.0124	-0.0028577	-4.8239	-0.0022928	475.2890696756791	20.453	0.14421	20.453	20.381	20.525	0	1350	52	0.80618626	0.031422377	0.80618626	327.599	0	12.768707						191	7	3	NaN	NaN	NaN	0.62311	1	7053	7053		23.85	2.0794	1	17594			26287	4955	15110	15544	20968	20968					0.09209921947717703
TFISYSVTF	9	Unmodified	_TFISYSVTF_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5298891881998	1	1064.52989	1063.52261	2.402	0.002557	-1.0146	-0.0010801	1.3874	0.0014769	1064.5284776242408	30.125	0.2172	30.125	30.077	30.294	0	120	130	1.5476005	0.0761137	1.5476005	313.9566	0	15.440918						809	10	5	NaN	NaN	NaN	0.016254	1	11277	11277		76.739	32.437	1	197540			26288	532	15111	15545	20969	20969					-0.006607680252045611
TFISYSVTF	9	Unmodified	_TFISYSVTF_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5298891881998	1	1064.52989	1063.52261	1.3103	0.0013949	0.29554	0.00031461	1.6059	0.0017095	1064.5303439125896	30.124	0.24127	30.118	30.07	30.311	-0.0064106	117	127	1.5493695	0.07432389	1.54785	314.31546	0	15.07782						750	11	4	NaN	NaN	NaN	0.0094682	1	11016	11016		93.472	37.978	1	195310			26289	532	15111	15545	20970	20970					-0.006607680252045611
TFIYDNTEFT	10	Unmodified	_TFIYDNTEFT_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.78241848415	2	625.782418	1249.55028	2.3708	0.0014836	-10.581	-0.0066212	-8.2098	-0.0051376	625.7755841242752	18.58	0.19184	18.58	18.46	18.652	0	1155	103	0.92591566	0.062441766	0.92591566	374.95453	0	25.286133						416	9	4	NaN	NaN	NaN	0.34693	1	17759	17759		25.801	3.9505	1	68928			26290	4	15112	15546	20971	20971					-0.06450909555633189
TFLDGKRAAG	10	Unmodified	_TFLDGKRAAG_					0	0	0			REV__ENST00000371817.7_1_9:137735754-137735988:+|nuORF	REV__ENST00000371817.7_1_9:137735754-137735988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2827230454001	2	518.282723	1034.55089	2.1024	0.0010897	-11.005	-0.0057039	-8.9029	-0.0046142	518.2769525671509	23.2	0.048197	23.2	23.176	23.224	0	1278	55	0.85049206	0.033189833	0.85049206	345.1924	0	13.470886						65	3	2	NaN	NaN	NaN	0.6772	1	9978	9978		9.6116	2.0713	1	8701	+		26291	11903	15113	15547	20972	20972					0.03499974674764417
TFLVHQDMIL	10	Unmodified	_TFLVHQDMIL_					0	0	0		nc|ENSG00000118492|Q8N7X0-2|ADGB;ENSG00000118492|ENST00000397944|ADGB	nc|ENSG00000118492|Q8N7X0-2|ADGB	nc|ENSG00000118492|Q8N7X0-2|ADGB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.8233664396001	2	608.823366	1215.63218	1.3146	0.00080037	-8.8046	-0.0053605	-7.49	-0.0045601	608.8170950173325	26.722	0.048246	26.711	26.687	26.735	-0.010645	1137	28	0.9369253	0.016504645	0.93540585	379.5286	0	6.685669						28	3	2	NaN	NaN	NaN	0.65442	1	16208	16208		11.17	1.4243	1	3638.7			26292	2178	15114	15548	20973	20973					0.03298914322499513
TFLVHQDMIL	10	Unmodified						0	0	0		nc|ENSG00000118492|Q8N7X0-2|ADGB;ENSG00000118492|ENST00000397944|ADGB	nc|ENSG00000118492|Q8N7X0-2|ADGB	nc|ENSG00000118492|Q8N7X0-2|ADGB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.823366	1215.63218	1.1955	0.00072786	-3.9856	-0.0024265	-2.7901	-0.0016987	608.8207446932713	26.601	0.1207	26.601	26.553	26.674	0	1092	40	0.9644182	0.023806632	0.9644182	390.66537		9.643585	-0.054844	0.0013428	0.014506	NaN	11.17	118	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12715			26293	2178	15114	15548							0.03298914322499513
TFMDRGFVF	9	Unmodified	_TFMDRGFVF_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2682270741501	2	560.268227	1118.5219	1.6201	0.00090767	-1.3969	-0.00078263	0.22318	0.00012504	560.2681540837041	27.857	0.19305	27.857	27.784	27.977	0	1239	52	0.87444305	0.031300247	0.87444305	354.56335	0	12.691406						124	9	3	NaN	NaN	NaN	0.42817	1	13607	13607		12.57	1.9647	1	14483			26294	1017	15115	15549	20974	20974					-0.03261885945880749
TFMDRGFVF	9	Unmodified	_TFMDRGFVF_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2682270741501	2	560.268227	1118.5219	1.0455	0.00058577	1.0489	0.00058765	2.0944	0.0011734	560.7705939508944	27.88	0.12071	27.87	27.822	27.943	-0.009552	1236	85	0.876284	0.051528275	0.8747646	355.3098	0	20.893341						179	6	3	NaN	NaN	NaN	0.16939	1	13205	13205		27.296	9.3265	1	23677			26295	1017	15115	15549	20975	20975					-0.03261885945880749
TFNGSGGEV	9	Unmodified	_TFNGSGGEV_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.3842875835002	1	867.384288	866.377011	1.6391	0.0014217	6.0142	0.0052166	7.6533	0.0066384	867.3889770261636	25.298	0.16883	25.286	25.238	25.407	-0.012011	435	64	1.360811	0.037556887	1.3592916	276.86646	0	7.641205						152	8	2	NaN	NaN	NaN	0.29681	1	5476	5476		19.118	1.3193	1	13392	+		26296	9871	15116	15550	20976	20976					-0.061522308213625365
TFNGSGGEV	9	Unmodified						0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	867.384288	866.377011	1.6391	0.0014217	6.0142	0.0052166	7.6533	0.0066384	867.3889770261636	25.298	0.16883	25.286	25.238	25.407	-0.012011	435	64	1.360811	0.037556887	1.3592916	276.86646		7.641205	-0.0061599	0.00013538	-0.00075972	NaN	19.118	152	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13392	+		26297	9871	15116	15550							-0.061522308213625365
TFPNAAAH	8	Unmodified	_TFPNAAAH_					0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.3998780682	1	828.399878	827.392602	1.7003	0.0014085	-5.0673	-0.0041978	-3.367	-0.0027892	828.3959813221613	27.036	0.24133	27.036	26.964	27.205	0	498	70	1.3232021	0.041234612	1.3232021	269.41284	0	8.39563						393	11	4	NaN	NaN	NaN	0.74229	1	5109	5109		16.417	0	1	62030	+		26298	10134	15117	15551	20977	20977					-0.02799899513672699
TFPQTYLH	8	Unmodified	_TFPQTYLH_					0	0	0		ENST00000396582.6_1_14:32626211-32626439:+|nuORF	ENST00000396582.6_1_14:32626211-32626439:+|nuORF	ENST00000396582.6_1_14:32626211-32626439:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4992577617999	1	1006.49926	1005.49198	2.6194	0.0026364	6.9935	0.0070389	9.6129	0.0096754	1006.5071838559716	32.369	0.024132	32.365	32.365	32.389	-0.0037613	234	28	1.4802408	0.015985012	1.4787214	300.51343	0	3.2452087						26	2	2	NaN	NaN	NaN	0.83211	1	8623	8623		4.9097	0.94122	1	1603.8			26299	6797	15118	15552	20978	20978					-0.010545016195919743
TFPSLLLVF	9	Unmodified	_TFPSLLLVF_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.6077455787001	1	1036.60775	1035.60047	1.0254	0.0010629	0.47128	0.00048853	1.4967	0.0015514	1036.6085653016034	41.498	0.21666	41.498	41.401	41.618	0	111	55	1.5529068	0.031836152	1.5529068	315.14185	0	6.4607544						198	10	2	NaN	NaN	NaN	0.030391	1	10032	10032		58.599	19.681	1	22183			26300	1239	15119	15553	20979	20979					0.08409289630867534
TFPSLLLVF	9	Unmodified	_TFPSLLLVF_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.6077455787001	1	1036.60775	1035.60047	0.76651	0.00079457	0.74076	0.00076787	1.5073	0.0015624	1036.607940311964	41.448	0.19253	41.456	41.384	41.577	0.0082588	108	55	1.5546752	0.031829476	1.5531558	315.50073	0	6.4593506						254	9	3	NaN	NaN	NaN	0.018156	1	9824	9824		74.332	32.547	1	23112			26301	1239	15119	15553	20980	20980					0.08409289630867534
TFPSPVSL	8	Unmodified	_TFPSPVSL_					0	0	0			REV__nc|ENSG00000072736|Q12968-5|NFATC3	REV__nc|ENSG00000072736|Q12968-5|NFATC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	847.4559959636	1	847.455996	846.448719	0.795	0.00067373	-3.3592	-0.0028468	-2.5642	-0.002173	847.4526032638724	28.025	0.2413	28.016	27.871	28.112	-0.0089779	435	64	1.360811	0.03756082	1.3592916	276.96832	0	7.6448364						275	11	2	NaN	NaN	NaN	0.49126	1	5208	5208		31.561	0	1	32816	+		26302	8588	15120	15554	20981	20981					0.01935308603140129
TFQFLITQ	8	Unmodified	_TFQFLITQ_					0	0	0		ENST00000254108.11_1_16:31202792-31202903:+|nuORF	ENST00000254108.11_1_16:31202792-31202903:+|nuORF	ENST00000254108.11_1_16:31202792-31202903:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.27129269184996	2	499.271293	996.528032	0.87497	0.00043685	-2.0823	-0.0010397	-1.2074	-0.00060281	499.2705061470722	27.011	0.16894	27.001	26.977	27.146	-0.010126	1323	79	0.8228144	0.047982335	0.82129496	334.12604	0	19.484558						250	8	4	NaN	NaN	NaN	0.79607	1	8276	8276		9.746	0	1	32851			26303	6283	15121	15555	20982	20982					0.029629555572796562
TFQSPVNFYR	10	Unmodified	_TFQSPVNFYR_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG;CATSPERG|p.E624Gfs*7|1|0.38|ENSG00000099338|chr19:38360834-38360834|A/-|frameshift_variant	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.81438731455	2	629.814387	1257.61422	1.372	0.00086413	-3.4991	-0.0022038	-2.1271	-0.0013397	629.8133124364314	24.647	0.07235	24.647	24.598	24.671	0	1143	55	0.9332562	0.033021748	0.9332562	377.9006	0	13.371399						128	4	3	NaN	NaN	NaN	0.56921	1	17945	17945		16.584	3.1211	1	16511			26304	1154	15122	15556	20983	20983					-0.004280846080291667
TFRRDDDH	8	Unmodified	_TFRRDDDH_					0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2415865122	2	531.241587	1060.46862	1.4696	0.00078071	2.0998	0.0011155	3.5694	0.0018962	531.7431855882094	34.3	0.096474	34.3	34.252	34.348	0	1296	46	0.8394264	0.027674615	0.8394264	340.59174	0	11.22879						122	5	3	NaN	NaN	NaN	0.67593	1	11103	11103		20.555	1.4371	1	12194	+		26305	8570	15123	15557	20984	20984					-0.059195474042098795
TFRRDDDH	8	Unmodified						0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.241587	1060.46862	1.4696	0.00078071	2.0998	0.0011155	3.5694	0.0018962	531.7431855882094	34.3	0.096474	34.3	34.252	34.348	0	1296	46	0.8394264	0.027674615	0.8394264	340.59174		11.22879	0.013233	-0.00083157	-0.001085	NaN	20.555	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12194	+		26306	8570	15123	15557							-0.059195474042098795
TFRRDDDH	8	Unmodified						0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.241587	1060.46862	0.71148	0.00037797	3.3852	0.0017984	4.0967	0.0021764	531.744448322304	34.275	0.12046	34.274	34.249	34.37	-0.0012474	1290	46	0.84311575	0.027668655	0.8415963	342.08865		11.226379	-0.013233	0.00053424	0.001085	NaN	20.555	141	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12272	+		26307	8570	15123	15557							-0.059195474042098795
TFSGGRGF	8	Unmodified	_TFSGGRGF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.3998780682001	1	828.399878	827.392602	1.1498	0.00095246	-3.7581	-0.0031132	-2.6083	-0.0021607	828.3971217625016	27.035	0.21722	27.025	26.977	27.194	-0.010124	498	100	1.3232021	0.059137583	1.3216827	269.4128	0	12.040802						346	10	3	NaN	NaN	NaN	0.6053	1	4990	4990		24.961	0	1	59400			26308	4130	15124	15558	20985	20985					-0.027998995136613303
TFSGGRGF	8	Unmodified						0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	828.399878	827.392602	1.7003	0.0014085	-5.0673	-0.0041978	-3.367	-0.0027892	828.3959813221613	27.036	0.24133	27.036	26.964	27.205	0	498	70	1.3232021	0.041234612	1.3232021	269.41284		8.39563	0.005428	-0.00045389	0.00075972	NaN	24.961	393	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62030			26309	4130	15124	15558							-0.027998995136613303
TFSKFLPGHE	10	Unmodified	_TFSKFLPGHE_					0	0	0		ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7982059341001	2	581.798206	1161.58186	1.5873	0.00092348	-8.5227	-0.0049585	-6.9354	-0.004035	581.7929082485813	29.474	0.14485	29.474	29.353	29.498	0	1191	76	0.90387505	0.045960188	0.90387505	366.33182	0	18.627197						189	7	2	NaN	NaN	NaN	0.70677	1	15206	15206		7.5876	1.8934	1	20855			26310	4967	15125	15559	20986	20986					0.007531279890145015
TFSKFLPGHE	10	Unmodified						0	0	0		ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.798206	1161.58186	1.2333	0.00071753	-10.291	-0.0059875	-9.0581	-0.00527	581.7922558926922	29.449	0.048267	29.442	29.417	29.466	-0.0070667	1191	73	0.90387505	0.044119358	0.9023556	366.33185		17.881134	-0.015986	-0.00096421	-0.00075972	NaN	7.5876	134	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18970			26311	4967	15125	15559							0.007531279890145015
TFSLRPFTTRD	11	Unmodified	_TFSLRPFTTRD_					0	0	0		ENST00000419746.5_1_2:179404074-179404299:+|nuORF	ENST00000419746.5_1_2:179404074-179404299:+|nuORF	ENST00000419746.5_1_2:179404074-179404299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.85150110235	2	670.851501	1339.68845	1.8815	0.0012622	-8.5925	-0.0057643	-6.711	-0.0045021	670.845960103262	25.66	0.072401	25.66	25.636	25.708	0	1074	52	0.9754029	0.031114936	0.9754029	394.70404	0	12.590912						159	4	4	NaN	NaN	NaN	0.61402	1	19407	19407		13.101	2.8575	1	18695			26312	6904	15126	15560	20987	20987					0.03219258483500198
TFSPHFKVFKW	11	Unmodified	_TFSPHFKVFKW_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.2555571127333	3	475.255557	1422.74484	1.7616	0.0008372	-0.79438	-0.00037753	0.96721	0.00045967	475.2554602728626	23.007	0.12026	23.007	22.983	23.103	0	1380	46	0.7876915	0.027755678	0.7876915	477.82947	0	16.837128						144	6	3	NaN	NaN	NaN	0.66679	1	20237	20237		9.6366	5.7359	1	15739			26313	1845	15127	15561	20988	20988					0.05037931110837235
TFSSIVYS	8	Unmodified	_TFSSIVYS_					0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	452.2265508372	2	452.226551	902.438549	0.80501	0.00036405	3.636	0.0016443	4.441	0.0020084	452.22880140480333	35.53	0.26531	35.53	35.458	35.723	0	1437	82	0.7524962	0.050036073	0.7524962	306.00482	0	20.34732						756	12	6	NaN	NaN	NaN	0.77489	1	6123	6123		12.588	0	1	297630	+		26314	9698	15128	15562	20989	20989					-0.01657299122086897
TFSSIVYS	8	Unmodified						0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	452.226551	902.438549	0.80501	0.00036405	3.636	0.0016443	4.441	0.0020084	452.22880140480333	35.53	0.26531	35.53	35.458	35.723	0	1437	82	0.7524962	0.050036073	0.7524962	306.00482		20.34732	0.00049464	-2.761E-06	-0.00016738	NaN	12.588	756	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297630	+		26315	9698	15128	15562							-0.01657299122086897
TFSSIVYS	8	Unmodified						0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	452.226551	902.438549	0.85918	0.00038855	3.6443	0.0016481	4.5035	0.0020366	452.22904743291747	35.529	0.21709	35.529	35.481	35.698	0.00053024	1434	85	0.75435036	0.0518865	0.7528309	306.75882		21.099792	-0.00049464	4.7422E-06	0.00016738	NaN	12.588	738	10	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299850	+		26316	9698	15128	15562							-0.01657299122086897
TFSTEPTG	8	Unmodified	_TFSTEPTG_					0	0	0		ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	ENST00000513016.5_1_5:82832752-82876250:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.3781395731	1	839.37814	838.370863	0.41094	0.00034493	-5.0834	-0.0042669	-4.6725	-0.003922	839.3740134093481	31.548	0.21721	31.544	31.519	31.737	-0.0044174	504	49	1.3196158	0.028689504	1.3180964	268.62518	0	5.840149						174	10	2	NaN	NaN	NaN	0.65075	1	5113	5113		22.126	0	1	16129			26317	7364	15129	15563	20990	20990					-0.05478749052895182
TFSTNASD	8	Unmodified	_TFSTNASD_					0	0	0			REV__nc|ENSG00000009413|O60673-2|REV3L	REV__nc|ENSG00000009413|O60673-2|REV3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	842.3526531041	1	842.352653	841.345377	0.88839	0.00074834	-5.0673	-0.0042684	-4.1789	-0.0035201	842.3466771911297	26.649	0.14477	26.639	26.59	26.735	-0.010645	483	43	1.3321642	0.025087357	1.3306447	271.1641	0	5.1065674						140	7	2	NaN	NaN	NaN	0.65075	1	5149	5149		22.126	8.3893	1	12800	+		26318	8394	15130	15564	20991	20991					-0.08164223575329288
TFSTTSST	8	Unmodified	_TFSTTSST_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.3730541952001	1	831.373054	830.365778	2.0214	0.0016805	-8.819	-0.0073319	-6.7976	-0.0056514	831.3659003506525	30.125	0.14482	30.125	30.077	30.222	0	489	46	1.3285799	0.026886344	1.3285799	270.492	0	5.473938						121	7	2	NaN	NaN	NaN	0.72043	1	5136	5136		17.78	8.6571	1	8767.1			26319	3436	15131	15565	20992	20992					-0.056190529155060176
TFSTTSST	8	Unmodified	_TFSTTSST_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.3730541952001	1	831.373054	830.365778	1.9961	0.0016595	-8.2689	-0.0068745	-6.2727	-0.005215	831.3664539195939	29.956	0.14477	29.956	29.908	30.053	0	492	49	1.3267875	0.028680325	1.3267875	270.12704	0	5.8391724						119	7	2	NaN	NaN	NaN	0.40747	1	5137	5137		36.036	2.338	1	10602			26320	3436	15131	15565	20993	20993					-0.056190529155060176
TFSTTSST	8	Unmodified	_TFSTTSST_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.1901653309	2	416.190165	830.365778	0.86751	0.00036105	-8.3565	-0.0034779	-7.489	-0.0031169	416.1868618698901	29.931	0.14477	29.925	29.901	30.045	-0.0064087	1449	37	0.74507743	0.022261143	0.743558	303.3818	0	9.064331						95	7	2	NaN	NaN	NaN	0.72043	1	5020	5020		17.78	8.6571	1	11823			26321	3436	15131	15565	20994	20994					-0.056190529155060176
TFSTTSST	8	Unmodified	_TFSTTSST_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.3730541952001	1	831.373054	830.365778	1.1308	0.00094008	-6.8374	-0.0056844	-5.7066	-0.0047443	831.3683818807855	29.931	0.16893	29.925	29.901	30.07	-0.0064087	489	52	1.3285799	0.030474544	1.3270605	270.49197	0	6.204468						106	8	2	NaN	NaN	NaN	0.57691	1	5021	5021		26.732	10.315	1	8258.7			26322	3436	15131	15565	20995	20995					-0.056190529155060176
TFSWGPSLS	9	Unmodified	_TFSWGPSLS_					0	0	0		ENST00000491971.5_1_1:249149922-249151721:-|nuORF;ENST00000533927.5_1_1:249149922-249151721:-|nuORF;ENST00000412341.6_1_1:249150017-249153213:-|nuORF;ENST00000470787.6_1_1:249149922-249153146:-|nuORF;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692	ENST00000491971.5_1_1:249149922-249151721:-|nuORF	ENST00000491971.5_1_1:249149922-249151721:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.4676232824	1	981.467623	980.460347	2.7338	0.0026832	0.36177	0.00035507	3.0956	0.0030382	981.469224046604	25.201	0.096514	25.189	25.165	25.262	-0.012011	264	55	1.4624695	0.032012343	1.46095	297.0081	0	6.5012817						44	5	2	NaN	NaN	NaN	0.55027	1	7725	7725		7.5404	0	1	3214.9			26323	4770	15132	15566	20996	20996					-0.030664943735246197
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.75072442525	2	529.750724	1057.4869	2.3809	0.0012613	-1.3234	-0.00070105	1.0576	0.00056026	529.7499404714293	23.176	0.19289	23.176	23.152	23.345	0	1254	85	0.8652351	0.051606297	0.8652351	351.07614	0	20.939697						464	9	4	NaN	NaN	NaN	0.0094682	1	10971	10971		93.472	35.236	1	197340			26324	5905	15133	15567	20997	20997					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.4941723839	1	1058.49417	1057.4869	2.3984	0.0025387	0.81638	0.00086413	3.2147	0.0034028	1058.4948942679691	23.176	0.096403	23.176	23.152	23.248	0	105	43	1.5564433	0.024750948	1.5564433	315.77362	0	5.021515						85	5	3	NaN	NaN	NaN	0.013281	1	10976	10976		82.96	59.11	1	5732.1			26325	5905	15133	15567	20998	20998					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.75072442525	2	529.750724	1057.4869	1.6544	0.00087644	-0.59632	-0.0003159	1.0581	0.00056054	529.7505025598717	23.223	0.19301	23.21	23.162	23.355	-0.013294	1254	79	0.8652351	0.04791498	0.86371565	351.07614	0	19.441864						493	9	4	NaN	NaN	NaN	0.016254	1	10747	10747		76.739	29.603	1	195580			26326	5905	15133	15567	20999	20999					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.4941723839	1	1058.49417	1057.4869	2.1714	0.0022984	1.2568	0.0013303	3.4282	0.0036287	1058.4947554197843	23.223	0.096518	23.21	23.186	23.283	-0.013294	102	46	1.5582114	0.02651751	1.556692	316.13232	0	5.3799133						83	5	2	NaN	NaN	NaN	0.04947	1	10750	10750		47.136	31.96	1	6794.8			26327	5905	15133	15567	21000	21000					-0.03954805482203483
TFTHGSQF	8	Unmodified	_TFTHGSQF_					0	0	0		ZNF566|p.R181T|1|0.26|ENSG00000186017|chr19:36449692-36449692|C/G|missense_variant	ZNF566|p.R181T|1|0.26|ENSG00000186017|chr19:36449692-36449692|C/G|missense_variant	ZNF566|p.R181T|1|0.26|ENSG00000186017|chr19:36449692-36449692|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.4210074408002	1	924.421007	923.413731	1.493	0.0013801	-6.8893	-0.0063686	-5.3963	-0.0049885	924.4145557569115	32.514	0.14476	32.514	32.466	32.611	0	306	64	1.4375578	0.03740537	1.4375578	292.19876	0	7.602997						186	7	3	NaN	NaN	NaN	0.49126	1	6466	6466		31.561	5.4461	1	15406			26328	14028	15134	15568	21001	21001					-0.05103934204794314
TFTISYDL	8	Unmodified	_TFTISYDL_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.2396582124499	2	480.239658	958.464763	1.7444	0.00083774	6.5246	0.0031334	8.2691	0.0039711	480.24333539243855	26.698	0.048262	26.698	26.674	26.722	0	1317	34	0.8265074	0.020310104	0.8265074	335.80704	0	8.251923						39	3	2	NaN	NaN	NaN	0.82797	1	7291	7291		5.4659	2.3125	1	2932.4			26329	5641	15135	15569	21002	21002					-0.016130299506357915
TFTKPEPNSH	10	Unmodified	_TFTKPEPNSH_					0	0	0			REV__ENSG00000163808|ENST00000326047|KIF15	REV__ENSG00000163808|ENST00000326047|KIF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.5243721626333	3	386.524372	1156.55129	1.4181	0.00054814	6.2685	0.0024229	7.6866	0.0029711	386.52712549805557	27.928	0.048246	27.919	27.895	27.943	-0.009552	1479	46	0.72651637	0.027855158	0.7249969	441.69305	0	16.934845						67	3	2	NaN	NaN	NaN	0.73444	1	14536	14536		2.7042	0.85398	1	5677.2	+		26330	10300	15136	15570	21003	21003					-0.020726503960531772
TFTSSSET	8	Unmodified	_TFTSSSET_					0	0	0			REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.3679688173	1	859.367969	858.360692	2.2427	0.0019273	-8.468	-0.0072771	-6.2253	-0.0053498	859.3610596204529	25.877	0.1448	25.865	25.841	25.986	-0.0116	471	40	1.3393306	0.023284197	1.3378111	272.53592	0	4.738037						96	7	2	NaN	NaN	NaN	0.76633	1	5376	5376		13.737	0	1	6567.4	+		26331	8182	15137	15571	21004	21004					-0.074153567781309
TFTSSSET	8	Unmodified	_TFTSSSET_					0	0	0			REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.3679688173	1	859.367969	858.360692	2.4417	0.0020984	-6.9153	-0.0059428	-4.4736	-0.0038444	859.360323078662	26.263	0.048239	26.252	26.252	26.3	-0.011137	459	37	1.3464937	0.02148509	1.3449743	273.99353	0	4.3719177						50	3	2	NaN	NaN	NaN	0.83211	1	5377	5377		4.9097	1.3365	1	2882.8	+		26332	8182	15137	15571	21005	21005					-0.074153567781309
TFTSSSET	8	Unmodified						0	0	0			REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	REV__nc|ENSG00000186714|Q6ZRK6-2|CCDC73	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	859.367969	858.360692	2.2427	0.0019273	-8.468	-0.0072771	-6.2253	-0.0053498	859.3610596204529	25.877	0.1448	25.865	25.841	25.986	-0.0116	471	40	1.3393306	0.023284197	1.3378111	272.53592		4.738037	-0.0059265	0.00014818	-0.00075972	NaN	13.737	96	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6567.4	+		26333	8182	15137	15571							-0.074153567781309
TFTSTEAA	8	Unmodified	_TFTSTEAA_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.3781395731	1	827.37814	826.370863	0.92758	0.00076746	-8.524	-0.0070526	-7.5965	-0.0062851	827.3714457439819	33.309	0.048248	33.307	33.307	33.355	-0.0024757	498	49	1.3232021	0.028683543	1.3216827	269.41827	0	5.840271						66	3	2	NaN	NaN	NaN	0.80071	1	4978	4978		9.1232	0	1	7791.7			26334	817	15138	15572	21006	21006					-0.04926749052901869
TFTSVDSS	8	Unmodified	_TFTSVDSS_					0	0	0			REV__PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	REV__PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.3730541952001	1	843.373054	842.365778	1.524	0.0012853	-7.2947	-0.0061522	-5.7707	-0.0048669	843.3675426328851	28.75	0.1448	28.75	28.701	28.846	0	498	103	1.3232021	0.060913444	1.3232021	269.3346	0	12.398773						193	7	2	NaN	NaN	NaN	0.45125	1	5288	5288		33.698	0	1	14069	+		26335	8601	15139	15573	21007	21007					-0.061710529155107
TFTSVDSS	8	Unmodified						0	0	0			REV__PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	REV__PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	843.373054	842.365778	1.524	0.0012853	-7.2947	-0.0061522	-5.7707	-0.0048669	843.3675426328851	28.75	0.1448	28.75	28.701	28.846	0	498	103	1.3232021	0.060913444	1.3232021	269.3346		12.398773	-0.12849	-3.0538E-05	-0.001033	NaN	33.698	193	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14069	+		26336	8601	15139	15573							-0.061710529155107
TFVRKLTLE	9	Unmodified	_TFVRKLTLE_					0	0	0			REV__ENST00000539253.5_1_1:205306230-205306326:-|nuORF	REV__ENST00000539253.5_1_1:205306230-205306326:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.8320487514501	2	553.832049	1105.64954	1.5793	0.00087466	-1.6678	-0.00092371	-0.088566	-4.9051E-05	553.8313523849467	19.108	0.26392	19.108	19.036	19.3	0	1161	79	0.9222442	0.04775989	0.9222442	373.99844	0	19.368103						353	12	4	NaN	NaN	NaN	0.35794	1	13105	13105		15.463	1.0377	1	96980	+		26337	12686	15140	15574	21008	21008					0.10094577919812764
TFVSGFLLF	9	Unmodified	_TFVSGFLLF_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5607953861	1	1030.5608	1029.55352	0.84361	0.00086939	-0.034112	-3.5154E-05	0.8095	0.00083423	1030.5606261166006	39.044	0.07222	39.044	39.02	39.093	0	120	40	1.5476005	0.022996426	1.5476005	314.08926	0	4.667206						71	4	2	NaN	NaN	NaN	0.023074	1	9763	9763		68.108	21.068	1	5721			26338	1546	15141	15575	21009	21009					0.039924300797110845
TFVSGFLLF	9	Unmodified	_TFVSGFLLF_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5607953861	1	1030.5608	1029.55352	1.6646	0.0017155	0.36332	0.00037442	2.0279	0.0020899	1030.5605325732874	39.042	0.072231	39.047	38.999	39.071	0.0046806	120	40	1.5476005	0.022998929	1.5460811	314.08923	0	4.667694						68	4	2	NaN	NaN	NaN	0.03623	1	9568	9568		52.758	15.456	1	5302.7			26339	1546	15141	15575	21010	21010					0.039924300797110845
TFWCARATN	9	Unmodified	_TFWCARATN_					0	0	0			REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF	REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.4883754995	1	1069.48838	1068.4811	2.0395	0.0021812	-10.57	-0.011304	-8.5301	-0.0091229	1069.476958691629	29.98	0.096539	29.98	29.956	30.053	0	186	61	1.5086359	0.035452366	1.5086359	306.03384	0	7.191681						175	5	3	NaN	NaN	NaN	0.41766	1	11471	11471		13.003	3.2568	1	14701	+		26340	11683	15142	15576	21011	21011					-0.050402272654991975
TFYDPEPIL	9	Unmodified	_TFYDPEPIL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5404538745	1	1094.54045	1093.53318	1.9295	0.002112	0.19054	0.00020856	2.1201	0.0023205	1094.5410380623848	29.474	0.21723	29.474	29.425	29.642	0	102	109	1.5582114	0.06363201	1.5582114	315.99808	0	12.904266						496	10	3	NaN	NaN	NaN	3.2142E-07	1	12546	12546		129.63	82.587	1	77392			26341	5429	15143	15577	21012	21012					-0.00984785370769714
TFYDPEPIL	9	Unmodified	_TFYDPEPIL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5404538745	1	1094.54045	1093.53318	1.3752	0.0015052	0.24165	0.00026449	1.6169	0.0017697	1094.5407794235978	29.473	0.12064	29.466	29.417	29.538	-0.0070667	99	112	1.5599792	0.06539607	1.5584598	316.3566	0	13.262024						403	6	3	NaN	NaN	NaN	3.2142E-07	1	12226	12226		129.63	71.028	1	74735			26342	5429	15143	15577	21013	21013					-0.00984785370769714
TFYGHANII	9	Unmodified	_TFYGHANII_					0	0	0		HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2665416649501	2	518.266542	1034.51853	1.0434	0.00054074	-7.8005	-0.0040428	-6.7572	-0.003502	518.2628418738364	27.542	0.16892	27.533	27.46	27.629	-0.0095501	1278	85	0.85049206	0.0516119	0.8489726	345.19254	0	20.947937						202	8	3	NaN	NaN	NaN	0.62619	1	9758	9758		4.4131	1.9516	1	14241			26343	3954	15144	15578	21014	21014					0.002651872717478909
TFYGHANII	9	Unmodified						0	0	0		HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.266542	1034.51853	1.5414	0.00079884	-7.1345	-0.0036976	-5.5931	-0.0028987	518.2630648696776	27.519	0.1207	27.519	27.471	27.591	0	1281	85	0.84864825	0.051606297	0.84864825	344.4442		20.945648	-0.0068899	0.00036659	-0.00016217	NaN	4.4131	187	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13648			26344	3954	15144	15578							0.002651872717478909
TGAASGGY	8	Unmodified	_TGAASGGY_					0	0	0		ENSG00000092531|ENST00000249647|SNAP23	ENSG00000092531|ENST00000249647|SNAP23	ENSG00000092531|ENST00000249647|SNAP23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	342.1533858941	2	342.153386	682.292219	1.6824	0.00057563	2.3135	0.00079159	3.9959	0.0013672	342.15457925821255	30.945	0.048277	30.94	30.915	30.964	-0.0050716	1560	70	0.67630076	0.04281348	0.6747813	276.34552	0	17.49414						75	3	2	NaN	NaN	NaN	0.84207	1	2790	2790		3.5732	0.41988	1	7244.4			26345	1098	15145	15579	21015	21015					-0.06163556567332762
TGAGGGGK	8	Unmodified	_TGAGGGGK_					0	0	0			REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.3049150505	1	604.304915	603.297639	1.2773	0.00077188	-4.9468	-0.0029894	-3.6695	-0.0022175	604.3016696591626	28.701	0.096525	28.701	28.653	28.75	0	807	76	1.1375128	0.04533136	1.1375128	233.00569	0	9.285568						192	5	3	NaN	NaN	NaN	0.84945	1	677	677		0	0	1	21950	+		26346	9051	15146	15580	21016	21016					-0.019878329848666
TGAGGGGK	8	Unmodified	_TGAGGGGK_					0	0	0			REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.3049150505	1	604.304915	603.297639	1.2119	0.00073237	-4.8704	-0.0029432	-3.6584	-0.0022108	604.3021101561081	28.798	0.12067	28.798	28.774	28.894	0	807	46	1.1375128	0.02719009	1.1375128	233.00569	0	5.5695496						111	6	2	NaN	NaN	NaN	0.84887	1	678	678		0.32989	0	1	10638	+		26347	9051	15146	15580	21017	21017					-0.019878329848666
TGAGGGGK	8	Unmodified	_TGAGGGGK_					0	0	0			REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.3049150505	1	604.304915	603.297639	0.73867	0.00044638	-5.8821	-0.0035546	-5.1435	-0.0031082	604.3018497869385	28.725	0.21718	28.716	28.644	28.861	-0.0083504	804	73	1.1393254	0.043511033	1.1378059	233.377	0	8.912704						332	10	3	NaN	NaN	NaN	0.84945	1	642	642		0	0	1	41160	+		26348	9051	15146	15580	21018	21018					-0.019878329848666
TGAGGGGK	8	Unmodified						0	0	0			REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	604.304915	603.297639	1.2773	0.00077188	-4.9468	-0.0029894	-3.6695	-0.0022175	604.3016696591626	28.701	0.096525	28.701	28.653	28.75	0	807	76	1.1375128	0.04533136	1.1375128	233.00569		9.285568	-0.0075184	0.00028057	-0.00014662	NaN	0	192	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21950	+		26349	9051	15146	15580							-0.019878329848666
TGAGGGGK	8	Unmodified						0	0	0			REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	REV__ENST00000578434.1_1_17:26879057-26879575:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	604.304915	603.297639	0.73867	0.00044638	-5.8821	-0.0035546	-5.1435	-0.0031082	604.3018497869385	28.725	0.21718	28.716	28.644	28.861	-0.0083504	804	73	1.1393254	0.043511033	1.1378059	233.377		8.912704	0.0075184	-0.00028465	0.00014662	NaN	0	332	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41160	+		26350	9051	15146	15580							-0.019878329848666
TGAGGPEP	8	Unmodified	_TGAGGPEP_					0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.1612109262	2	343.161211	684.307869	1.3143	0.00045103	3.6093	0.0012386	4.9236	0.0016896	343.1628339482885	32.73	0.24133	32.727	32.679	32.92	-0.0031052	1467	61	0.7339432	0.037130177	0.7324238	299.88165	0	15.17099						209	11	3	NaN	NaN	NaN	0.84727	1	2841	2841		1.2418	0	1	32438	+		26351	9778	15147	15581	21019	21019					-0.04691270050284402
TGAGGPEP	8	Unmodified						0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	343.161211	684.307869	1.4069	0.00048278	2.1742	0.0007461	3.5811	0.0012289	343.16244415674834	32.732	0.21714	32.732	32.683	32.9	0	1470	55	0.7320868	0.03341353	0.7320868	299.12317		13.652435	0.0020855	-0.00061603	-0.00016848	NaN	1.2418	264	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36846	+		26352	9778	15147	15581							-0.04691270050284402
TGAGGPEP	8	Unmodified						0	0	0			REV__nc|ENSG00000139737|Q8ND83|SLAIN1	REV__nc|ENSG00000139737|Q8ND83|SLAIN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	343.161211	684.307869	1.3143	0.00045103	3.6093	0.0012386	4.9236	0.0016896	343.1628339482885	32.73	0.24133	32.727	32.679	32.92	-0.0031052	1467	61	0.7339432	0.037130177	0.7324238	299.88165		15.17099	-0.0020855	0.00036892	0.00016848	NaN	1.2418	209	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32438	+		26353	9778	15147	15581							-0.04691270050284402
TGASGKAK	8	Unmodified	_TGASGKAK_					0	0	0			REV__ENST00000533506.5_1_14:50459747-50459846:-|nuORF	REV__ENST00000533506.5_1_14:50459747-50459846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.4046290951	1	719.404629	718.397353	1.1016	0.00079251	-5.6747	-0.0040824	-4.5731	-0.0032899	719.4004293996817	29.305	0.12063	29.305	29.256	29.377	0	567	91	1.2819146	0.05393088	1.2819146	261.65237	0	11.007874						248	6	3	NaN	NaN	NaN	0.84887	1	3567	3567		0.32989	0	1	26079	+		26354	12660	15148	15582	21020	21020					0.026889846290828245
TGASLADIM	9	Unmodified	_TGASLADIM_					0	0	0		ENST00000446071.1_1_9:72832122-72832404:+|nuORF;ENSG00000114391|ENST00000394077|RPL24	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	878.4287949351001	1	878.428795	877.421518	1.8267	0.0016046	-0.50691	-0.00044528	1.3198	0.0011593	878.4283349283807	26.505	0.16894	26.505	26.481	26.65	0	396	79	1.3840506	0.04646182	1.3840506	281.53937	0	9.451111						207	8	2	NaN	NaN	NaN	0.094712	1	5766	5766		36.586	5.9763	1	33504			26355	1956	15149	15583	21021	21021					-0.022095429995488303
TGASLADIM	9	Unmodified	_TGASLADIM_					0	0	0		ENST00000446071.1_1_9:72832122-72832404:+|nuORF;ENSG00000114391|ENST00000394077|RPL24	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENST00000446071.1_1_9:72832122-72832404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	878.4287949351001	1	878.428795	877.421518	1.1932	0.0010481	-0.03091	-2.7152E-05	1.1623	0.001021	878.4293867269079	26.504	0.14475	26.494	26.47	26.614	-0.010645	396	82	1.3840506	0.04824114	1.3825312	281.53937	0	9.81308						250	7	3	NaN	NaN	NaN	0.056143	1	5640	5640		44.302	16.514	1	31381			26356	1956	15149	15583	21022	21022					-0.022095429995488303
TGDPALPL	8	Unmodified	_TGDPALPL_					0	0	0		ENST00000518659.5_1_5:167379791-167474486:+|nuORF	ENST00000518659.5_1_5:167379791-167474486:+|nuORF	ENST00000518659.5_1_5:167379791-167474486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4246958352002	1	783.424696	782.417419	1.4137	0.0011076	4.9555	0.0038823	6.3693	0.0049898	783.4282862154353	32.756	0.072388	32.756	32.732	32.804	0	483	52	1.3321642	0.030467987	1.3321642	271.4921	0	6.20932						94	4	2	NaN	NaN	NaN	0.84651	1	4530	4530		1.6704	0	1	7301			26357	7384	15150	15584	21023	21023					0.017507355690554505
TGDPSPCPT	9	Unmodified	_TGDPSPCPT_					0	0	0		ENST00000520970.5_1_8:22058712-22069238:+|nuORF	ENST00000520970.5_1_8:22058712-22069238:+|nuORF	ENST00000520970.5_1_8:22058712-22069238:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.3611093004	1	874.361109	873.353833	1.6921	0.0014795	3.1715	0.0027731	4.8636	0.0042525	874.3644442519766	26.336	0.096493	26.324	26.276	26.373	-0.011137	417	52	1.3715409	0.030390263	1.3700215	279.01474	0	6.1823425						90	5	2	NaN	NaN	NaN	0.36492	1	5570	5570		15.175	2.5875	1	5268.3			26358	7398	15151	15585	21024	21024					-0.08790992930357788
TGDTLCAE	8	Unmodified	_TGDTLCAE_					0	0	0		tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	tr|U7T3A9|U7T3A9_FUSNUElongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fusAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.17091833275	2	405.170918	808.327284	0.16222	6.5725E-05	-7.5459	-0.0030574	-7.3837	-0.0029917	405.167851662192	44.158	0.31165	44.17	44.05	44.361	0.011429	1362	43	0.79879075	0.025892675	0.7972713	325.39688	0	10.547668						200	14	2	NaN	NaN	NaN	0.84455	1	4769	4769		2.7852	1.1148	1	42148			26359	13969	15152	15586	21025	21025					-0.08454681821683607
TGENQLSL	8	Unmodified	_TGENQLSL_					0	0	0			REV__nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	REV__nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.4312377761001	1	861.431238	860.423961	0.92562	0.00079736	-0.51488	-0.00044354	0.41074	0.00035382	861.4305013498132	20.766	0.19266	20.752	20.704	20.897	-0.014086	447	70	1.3536539	0.04117322	1.3521345	275.4401	0	8.377869						289	9	3	NaN	NaN	NaN	0.55996	1	5399	5399		27.789	3.2268	1	35417	+		26360	8956	15153	15587	21026	21026					-0.011833712702241428
TGEPGAPG	8	Unmodified	_TGEPGAPG_					0	0	0		ENST00000399799.2_1_18:18690928-18691354:-|nuORF	ENST00000399799.2_1_18:18690928-18691354:-|nuORF	ENST00000399799.2_1_18:18690928-18691354:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.1612109262	2	343.161211	684.307869	1.8155	0.000623	3.9288	0.0013482	5.7443	0.0019712	343.16265318442754	28.99	0.09651	28.982	28.934	29.031	-0.0077229	1479	34	0.72651637	0.020427108	0.7249969	296.84714	0	8.346313						63	5	2	NaN	NaN	NaN	0.84651	1	2842	2842		1.6704	0	1	5188.3			26361	6826	15154	15588	21027	21027					-0.04691270050284402
TGESASGA	8	Unmodified	_TGESASGA_					0	0	0		ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.2893245658	1	679.289325	678.282048	1.1776	0.00079994	-9.2163	-0.0062605	-8.0386	-0.0054606	679.2828777110196	28.363	0.048248	28.354	28.305	28.354	-0.0089779	1083	76	0.9699114	0.045791864	0.96839195	198.1882	0	9.356949						100	3	2	NaN	NaN	NaN	0.84455	1	2715	2715		2.7852	0	1	7968.7			26362	6341	15155	15589	21028	21028					-0.06996164292559115
TGFGGFGGG	9	Unmodified	_TGFGGFGGG_					0	0	0			REV__ENST00000502850.5_1_4:77053774-77066720:-|nuORF	REV__ENST00000502850.5_1_4:77053774-77066720:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3311298010002	1	756.33113	755.323853	0.84049	0.00063569	0.66749	0.00050485	1.508	0.0011405	756.331351826901	40.392	0.072079	40.392	40.344	40.416	0	678	115	1.2152823	0.06851733	1.2152823	247.82495	0	13.972305						180	4	2	NaN	NaN	NaN	0.65818	1	4155	4155		2.7852	0	1	16003	+		26363	12522	15156	15590	21029	21029					-0.06359563813362001
TGFMVGREYE	10	Unmodified	_TGFMVGREYE_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7713308691001	2	594.771331	1187.52811	0.74312	0.00044199	-2.004	-0.0011919	-1.2609	-0.00074994	594.770630564977	27.566	0.19304	27.557	27.412	27.605	-0.009552	1215	79	0.8891654	0.047790825	0.88764596	360.2777	0	19.364197						252	9	2	NaN	NaN	NaN	0.5917	1	15461	15461		15.463	0	1	49078			26364	2730	15157	15591	21030	21030					-0.058154125050123184
TGFMVGREYE	10	Unmodified						0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	594.771331	1187.52811	1.246	0.00074108	-0.73297	-0.00043595	0.51303	0.00030513	594.7702678378871	27.76	0.12063	27.76	27.76	27.881	0	1215	40	0.8891654	0.023912191	0.8891654	360.2777		9.688904	0.1017	0.0010879	0.00075972	NaN	15.463	95	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13022			26365	2730	15157	15591							-0.058154125050123184
TGGAAGQR	8	Unmodified	_TGGAAGQR_					0	0	0			REV__ENST00000512215.5_1_4:102268380-102268632:-|nuORF	REV__ENST00000512215.5_1_4:102268380-102268632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3638269129	1	717.363827	716.35655	1.4411	0.0010338	4.7442	0.0034033	6.1854	0.0044372	717.3671229097869	28.412	0.072376	28.412	28.388	28.46	0	690	46	1.2080631	0.027079582	1.2080631	246.5916	0	5.527527						59	4	2	NaN	NaN	NaN	0.84455	1	3539	3539		2.7852	0.60885	1	4413.7	+		26366	12563	15158	15592	21031	21031					-0.012973566905316147
TGGAAGQR	8	Unmodified						0	0	0			REV__ENST00000512215.5_1_4:102268380-102268632:-|nuORF	REV__ENST00000512215.5_1_4:102268380-102268632:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	717.363827	716.35655	1.4411	0.0010338	4.7442	0.0034033	6.1854	0.0044372	717.3671229097869	28.412	0.072376	28.412	28.388	28.46	0	690	46	1.2080631	0.027079582	1.2080631	246.5916		5.527527	0	0	0	NaN	2.7852	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4413.7	+		26367	12563	15158	15592							-0.012973566905316147
TGGAGGAA	8	Unmodified	_TGGAGGAA_					0	0	0		ENST00000339142.6_2_17:77020258-77030443:+|nuORF;ENST00000582295.1_1_17:77020258-77021030:+|nuORF;ENST00000580454.5_2_17:77019075-77040120:+|nuORF;ENST00000579760.5_2_17:77020159-77040120:+|nuORF	ENST00000339142.6_2_17:77020258-77030443:+|nuORF	ENST00000339142.6_2_17:77020258-77030443:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2627158848	1	561.262716	560.255439	2.3014	0.0012917	-11.862	-0.0066578	-9.5608	-0.0053661	561.2573825616564	25.443	0.072388	25.431	25.382	25.455	-0.012011	1233	49	0.87812483	0.029451072	0.8766054	180.17854	0	6.042923						62	4	2	NaN	NaN	NaN	0.84876	1	456	456		0.39566	0	1	4406.8			26368	6539	15159	15593	21032	21032					-0.04227808393250143
TGGCADDA	8	Unmodified	_TGGCADDA_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.2457451915999	1	709.245745	708.238469	1.5498	0.0010992	-1.967	-0.0013951	-0.41718	-0.00029589	709.244735906163	20.742	0.024088	20.728	20.728	20.752	-0.014088	972	76	1.0375156	0.045550942	1.0359962	211.82478	0	9.299927						51	2	2	NaN	NaN	NaN	0.84945	1	3319	3319		0	0	1	3047	+		26369	9335	15160	15594	21033	21033					-0.12732097061359582
TGGFGGGV	8	Unmodified	_TGGFGGGV_					0	0	0		TBC1D12-HELLS|1|fusion;ENSG00000108239|ENST00000225235|TBC1D12	TBC1D12-HELLS|1|fusion	TBC1D12-HELLS|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	326.158471272	2	326.158471	650.30239	1.501	0.00048958	2.9592	0.00096516	4.4602	0.0014547	326.1599059816677	40.294	0.21635	40.301	40.181	40.397	0.0067558	1533	79	0.6930556	0.04836893	0.6915362	283.46475	0	19.783234						373	10	4	NaN	NaN	NaN	0.84692	1	1964	1964		1.4396	0.19772	1	86914			26370	13712	15161	15595	21034	21034					-0.036749488420923626
TGGGAALI	8	Unmodified	_TGGGAALI_					0	0	0			REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3722663342002	1	659.372266	658.36499	1.0756	0.0007092	6.0168	0.0039673	7.0923	0.0046765	659.375796698083	32.683	0.096516	32.683	32.659	32.756	0	666	55	1.2224985	0.03245902	1.2224985	249.95026	0	6.6365204						123	5	2	NaN	NaN	NaN	0.84887	1	2270	2270		0.32989	0	1	11828	+		26371	11557	15162	15596	21035	21035					0.02214197226101078
TGGGAALI	8	Unmodified	_TGGGAALI_					0	0	0			REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3722663342002	1	659.372266	658.36499	1.0606	0.00069935	6.5607	0.004326	7.6214	0.0050253	659.3766556962496	32.706	0.14478	32.703	32.655	32.8	-0.0031052	663	67	1.2243022	0.039672136	1.2227827	250.319	0	8.111298						163	7	2	NaN	NaN	NaN	0.84692	1	2193	2193		1.4396	0	1	13943	+		26372	11557	15162	15596	21036	21036					0.02214197226101078
TGGGAALI	8	Unmodified						0	0	0			REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	659.372266	658.36499	1.0756	0.0007092	6.0168	0.0039673	7.0923	0.0046765	659.375796698083	32.683	0.096516	32.683	32.659	32.756	0	666	55	1.2224985	0.03245902	1.2224985	249.95026		6.6365204	-0.009969	-0.00018087	-0.00014206	NaN	1.4396	123	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11828	+		26373	11557	15162	15596							0.02214197226101078
TGGGAALI	8	Unmodified						0	0	0			REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	REV__ENST00000438748.5_1_2:113299624-113300117:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	659.372266	658.36499	1.0606	0.00069935	6.5607	0.004326	7.6214	0.0050253	659.3766556962496	32.706	0.14478	32.703	32.655	32.8	-0.0031052	663	67	1.2243022	0.039672136	1.2227827	250.319		8.111298	0.009969	0.0001778	0.00014206	NaN	1.4396	163	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13943	+		26374	11557	15162	15596							0.02214197226101078
TGGGGGPGP	9	Unmodified	_TGGGGGPGP_					0	0	0		ENSG00000235608|ENST00000422806|NKX1-1	REV__HSF5|p.H211Pfs*19|1|0.3|ENSG00000176160|chr17:58480186-58480187|-/G|frameshift_variant	REV__HSF5|p.H211Pfs*19|1|0.3|ENSG00000176160|chr17:58480186-58480187|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.2998296726	1	656.29983	655.292553	1.3439	0.00088203	7.2044	0.0047282	8.5483	0.0056103	656.3040115466802	23.778	0.33754	23.765	23.717	24.054	-0.013048	750	67	1.1719203	0.03980398	1.1704009	239.63194	0	8.139038						309	15	3	NaN	NaN	NaN	0.67989	1	2088	2088		0.92586	0	1	33275			26375	6051	15163	15597	21037	21037					-0.048881368474781084
TGGHGLGA	8	Unmodified	_TGGHGLGA_					0	0	0			REV__nc|ENSG00000185379|O75771-8|RAD51D	REV__nc|ENSG00000185379|O75771-8|RAD51D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3314641520001	1	669.331464	668.324188	1.1479	0.00076834	-9.913	-0.0066351	-8.7651	-0.0058667	669.3240302090984	28.966	0.16894	28.958	28.91	29.079	-0.0077229	675	82	1.2170867	0.048743248	1.2155672	248.76837	0	9.962952						176	8	2	NaN	NaN	NaN	0.8439	1	2455	2455		3.1533	1.483	1	17421	+		26376	13197	15164	15598	21038	21038					-0.023241440935180435
TGGLGPHV	8	Unmodified	_TGGLGPHV_					0	0	0		ENST00000244174.10_2_X:155239695-155239764:+|nuORF	ENST00000244174.10_2_X:155239695-155239764:+|nuORF	ENST00000244174.10_2_X:155239695-155239764:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3940644088	1	737.394064	736.386788	1.8934	0.0013962	-5.1474	-0.0037957	-3.254	-0.0023995	737.390408262376	23.706	0.16865	23.693	23.621	23.789	-0.013048	582	61	1.2729256	0.03597319	1.2714062	259.69882	0	7.339142						120	8	2	NaN	NaN	NaN	0.84692	1	3780	3780		1.4396	0	1	11304			26377	6269	15165	15599	21039	21039					0.008050019746519865
TGGNCCYG	8	Unmodified	_TGGNCCYG_					0	0	0			REV__LRP1B|p.Y4399C|1|0.09|ENSG00000168702|chr2:140270293-140270293|T/C|missense_variant	REV__LRP1B|p.Y4399C|1|0.09|ENSG00000168702|chr2:140270293-140270293|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.2545357389	1	774.254536	773.247259	0.43553	0.00033721	-1.9914	-0.0015418	-1.5558	-0.0012046	774.2534637977395	57.69	0.048	57.69	57.642	57.69	-0.00051117	594	37	1.265731	0.021588564	1.2642115	258.00592	0	4.4006042						53	3	2	NaN	NaN	NaN	0.84876	1	4325	4325		0.39566	0	1	3575.4	+		26378	13056	15166	15600	21040	21040					-0.14843446696522733
TGGPAPPE	8	Unmodified	_TGGPAPPE_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3464455142	1	725.346446	724.339169	1.0942	0.00079371	4.5909	0.00333	5.6851	0.0041237	725.3494709634473	28.025	0.24137	28.016	27.968	28.209	-0.0089779	627	97	1.24593	0.05766785	1.2444105	254.26843	0	11.768814						373	11	3	NaN	NaN	NaN	0.76633	1	3591	3591		13.737	1.1492	1	54845	+		26379	8390	15167	15601	21041	21041					-0.03402697016190359
TGGPEVGL	8	Unmodified	_TGGPEVGL_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3777456426002	1	729.377746	728.370469	2.4193	0.0017646	-1.7778	-0.0012967	0.64156	0.00046794	729.3771626596235	17.306	0.096003	17.292	17.268	17.364	-0.013569	645	34	1.2351195	0.019824386	1.2336	252.03638	0	4.0453186						59	5	2	NaN	NaN	NaN	0.82797	1	3664	3664		5.4659	0	1	3345	+		26380	11175	15168	15602	21042	21042					-0.004581239820822702
TGGPEVGL	8	Unmodified						0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	729.377746	728.370469	1.7348	0.0012653	-0.74033	-0.00053998	0.99447	0.00072534	729.3773568467856	17.309	0.071856	17.309	17.261	17.333	0	648	37	1.2333171	0.021630168	1.2333171	251.66858		4.413803	0.0085162	0.00038973	-0.00014149	NaN	5.4659	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4258.9	+		26381	11175	15168	15602							-0.004581239820822702
TGGPEVGL	8	Unmodified						0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	729.377746	728.370469	2.4193	0.0017646	-1.7778	-0.0012967	0.64156	0.00046794	729.3771626596235	17.306	0.096003	17.292	17.268	17.364	-0.013569	645	34	1.2351195	0.019824386	1.2336	252.03638		4.0453186	-0.0085162	-0.00036695	0.00014149	NaN	5.4659	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3345	+		26382	11175	15168	15602							-0.004581239820822702
TGGPGGLW	8	Unmodified	_TGGPGGLW_					0	0	0		ENST00000174618.4_1_17:2289113-2289266:-|nuORF	ENST00000174618.4_1_17:2289113-2289266:-|nuORF	ENST00000174618.4_1_17:2289113-2289266:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.3675153073001	1	744.367515	743.360239	1.5486	0.0011527	4.664	0.0034717	6.2126	0.0046245	744.3714548444327	34.517	0.096546	34.517	34.493	34.589	0	603	55	1.2603331	0.032393098	1.2603331	257.08557	0	6.607605						120	5	2	NaN	NaN	NaN	0.81807	1	3963	3963		6.794	2.7403	1	11023			26383	6219	15169	15603	21043	21043					-0.02170686916667819
TGGPGGLW	8	Unmodified						0	0	0		ENST00000174618.4_1_17:2289113-2289266:-|nuORF	ENST00000174618.4_1_17:2289113-2289266:-|nuORF	ENST00000174618.4_1_17:2289113-2289266:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	744.367515	743.360239	1.4757	0.0010985	4.5213	0.0033655	5.9971	0.004464	744.3710977251566	34.492	0.14473	34.491	34.467	34.612	-0.0006485	606	67	1.2585332	0.039583087	1.2570138	256.71848		8.074249	-0.013027	-5.3722E-05	-0.0016596	NaN	6.794	129	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10179			26384	6219	15169	15603							-0.02170686916667819
TGGPLCLQ	8	Unmodified	_TGGPLCLQ_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.3971008762002	1	788.397101	787.389824	1.5135	0.0011932	1.1898	0.00093803	2.7032	0.0021312	788.3978907887865	32.008	0.28957	32.008	31.959	32.249	0	492	115	1.3267875	0.068174124	1.3267875	270.3669	0	13.892212						431	13	4	NaN	NaN	NaN	0.65075	1	4592	4592		22.126	4.346	1	68282			26385	6810	15170	15604	21044	21044					-0.012374909628306341
TGGPTPNV	8	Unmodified	_TGGPTPNV_					0	0	0			REV__ENSG00000132153|ENST00000445061|DHX30	REV__ENSG00000132153|ENST00000445061|DHX30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.3729946157001	1	742.372995	741.365718	1.9454	0.0014442	5.1076	0.0037918	7.053	0.005236	742.3766315506617	23.103	0.096376	23.09	23.065	23.162	-0.013294	618	49	1.2513325	0.028809309	1.2498131	255.26207	0	5.876877						90	5	2	NaN	NaN	NaN	0.78264	1	3860	3860		11.548	0	1	8792.9	+		26386	9526	15171	15605	21045	21045					-0.015310081248458118
TGGSSSCC	8	Unmodified	_TGGSSSCC_					0	0	0			REV__ENSG00000121621|ENST00000263181|KIF18A	REV__ENSG00000121621|ENST00000263181|KIF18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.2229012595	1	701.222901	700.215625	0.98577	0.00069125	-2.6394	-0.0018508	-1.6536	-0.0011595	701.2211703587967	28.894	0.072384	28.894	28.87	28.943	0	696	64	1.2044523	0.03791547	1.2044523	245.9609	0	7.7427063						113	4	2	NaN	NaN	NaN	0.84945	1	3219	3219		0	0	1	9398.1	+		26387	9333	15172	15606	21046	21046					-0.14647439450482125
TGGSSSCC	8	Unmodified	_TGGSSSCC_					0	0	0			REV__ENSG00000121621|ENST00000263181|KIF18A	REV__ENSG00000121621|ENST00000263181|KIF18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.2229012595	1	701.222901	700.215625	2.1223	0.0014882	-3.3823	-0.0023717	-1.26	-0.00088357	701.220439982243	26.167	1.1583	26.156	25.745	26.904	-0.011135	663	376	1.2243022	0.22656178	1.2227827	250.01445	0	46.266144						4044	49	2	NaN	NaN	NaN	0.84945	1	3159	3159		0	0	1	770290	+		26388	9333	15172	15606	21047	21047					-0.14647439450482125
TGGWLDASI	9	Unmodified	_TGGWLDASI_					0	0	0			REV__ENSG00000187017|ENST00000645284|ESPN	REV__ENSG00000187017|ENST00000645284|ESPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	460.2296248423999	2	460.229625	918.444697	1.4636	0.00067357	-3.5424	-0.0016303	-2.0789	-0.00095675	460.2285202549902	13.517	0.072087	13.517	13.493	13.565	0	1371	34	0.79324204	0.020347536	0.79324204	322.49	0	8.272217						65	4	2	NaN	NaN	NaN	0.39244	1	6385	6385		14.042	0	1	5760.7	+		26389	11018	15173	15607	21048	21048					-0.017787808905836755
TGHLREGGVWL	11	Unmodified	_TGHLREGGVWL_					0	0	0		ENST00000313946.12_1_4:3945001-3949165:-|nuORF	ENST00000313946.12_1_4:3945001-3949165:-|nuORF	ENST00000313946.12_1_4:3945001-3949165:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.8278290408001	2	612.827829	1223.64111	0.79759	0.00048879	-6.2526	-0.0038318	-5.455	-0.003343	612.8245425821561	14.717	0.16803	14.717	14.669	14.837	0	1164	49	0.9204082	0.029381156	0.9204082	372.81046	0	11.900818						180	8	3	NaN	NaN	NaN	0.73057	1	17067	17067		5.4499	0.72086	1	17800			26390	6459	15174	15608	21049	21049					0.03823024003190767
TGILTESCSI	10	Unmodified	_TGILTESCSI_					0	0	0		ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1023.5026881597001	1	1023.50269	1022.49541	2.2083	0.0022602	3.3163	0.0033942	5.5245	0.0056544	1023.5067138721613	23.706	0.04817	23.693	23.645	23.693	-0.013048	228	49	1.4837929	0.028413057	1.4822735	301.1668	0	5.767029						61	3	2	NaN	NaN	NaN	0.47601	1	9269	9269		20.449	1.3303	1	6423.4			26391	6965	15175	15609	21050	21050					-0.014936196278654279
TGISEFVLL	9	Unmodified	_TGISEFVLL_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5506246303001	1	978.550625	977.543348	1.0309	0.0010087	0.41233	0.00040349	1.4432	0.0014122	978.5508743637778	31.235	0.096527	31.235	31.187	31.284	0	195	61	1.5033154	0.03547871	1.5033154	305.316	0	7.2055664						178	5	3	NaN	NaN	NaN	0.16171	1	7826	7826		27.789	0	1	22498			26392	5411	15176	15610	21051	21051					0.053678223544807224
TGKAGSKG	8	Unmodified	_TGKAGSKG_					0	0	0			REV__nc|ENSG00000204248|P13942-5|COL11A2	REV__nc|ENSG00000204248|P13942-5|COL11A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3889790309	1	705.388979	704.381703	1.5888	0.0011207	-8.9837	-0.006337	-7.3949	-0.0052163	705.3829600118329	25.515	0.096497	25.515	25.467	25.564	0	636	70	1.2405256	0.041419983	1.2405256	253.29872	0	8.457413						89	5	2	NaN	NaN	NaN	0.84897	1	3296	3296		0.27539	0	1	4705.5	+		26393	11230	15177	15611	21052	21052					0.017686981120391465
TGKGSSGG	8	Unmodified	_TGKGSSGG_					0	0	0			REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF	REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.65883541275	2	325.658835	649.303118	1.6372	0.00053317	3.9982	0.001302	5.6354	0.0018352	325.66066683627383	44.568	0.38394	44.568	44.4	44.784	0	1533	100	0.6930556	0.06138134	0.6930556	283.4737	0	25.106201						582	17	2	NaN	NaN	NaN	0.84897	1	2042	2042		0.27539	0	1	71991	+		26394	8711	15178	15612	21053	21053					-0.03556154193040584
TGKKTLQV	8	Unmodified	_TGKKTLQV_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.5356432681001	1	874.535643	873.528367	-0.16073	-0.00014056	8.7346	0.0076387	8.5738	0.0074981	874.5436607316213	57.019	0.024086	57.018	56.994	57.018	-0.00056458	252	40	1.4695803	0.023103952	1.4680609	298.95807	0	4.7000732						46	2	2	NaN	NaN	NaN	0.84606	1	5592	5592		1.9246	0	1	4031.9			26395	2264	15179	15613	21054	21054					0.0865437527713766
TGKKTLQV	8	Unmodified						0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	874.535643	873.528367	1.8859	0.0016492	12.875	0.01126	14.761	0.012909	874.5483519936795	57.021	0.024029	57.021	56.996	57.021	0	252	37	1.4695803	0.021327853	1.4695803	298.95807		4.338745	0.0012139	0.0019682	0.00075972	NaN	1.9246	35	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2343.1			26396	2264	15179	15613							0.0865437527713766
TGKPWVQKCK	10	Unmodified	_TGKPWVQKCK_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.2182260159333	3	392.218226	1173.63285	1.7826	0.00069916	5.945	0.0023317	7.7276	0.0030309	392.2210411706938	21.44	0.096283	21.426	21.378	21.475	-0.014006	1488	28	0.7209441	0.016718566	0.71942466	438.2303	0	10.162476						62	5	2	NaN	NaN	NaN	0.73444	1	15059	15059		2.7042	0	1	5167.8	+		26397	10130	15180	15614	21055	21055					0.052977537621927695
TGLAEDQIL	9	Unmodified	_TGLAEDQIL_					0	0	0			REV__ENST00000465608.1_1_10:99359730-99359997:+|nuORF	REV__ENST00000465608.1_1_10:99359730-99359997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.25583959290003	2	480.25584	958.497126	1.6674	0.00080078	-3.2648	-0.001568	-1.5974	-0.00076718	480.2540890002933	28.435	0.09655	28.426	28.402	28.499	-0.0089798	1338	37	0.81357855	0.022172093	0.8120591	330.554	0	9.008423						74	5	2	NaN	NaN	NaN	0.51576	1	7153	7153		8.962	0	1	6428.2	+		26398	12294	15181	15615	21056	21056					0.01621757452392103
TGLGGWGG	8	Unmodified	_TGLGGWGG_					0	0	0			REV__ENST00000265742.7_1_7:91875676-91875736:+|nuORF	REV__ENST00000265742.7_1_7:91875676-91875736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.3362151789001	1	704.336215	703.328939	0.80635	0.00056794	6.0939	0.0042922	6.9003	0.0048601	704.3407202732213	31.886	0.072388	31.881	31.857	31.93	-0.0044155	705	52	1.1990347	0.030699968	1.1975152	244.83374	0	6.2687073						81	4	2	NaN	NaN	NaN	0.84876	1	3212	3212		0.39566	0	1	4388.9	+		26399	11571	15182	15616	21057	21057					-0.03459259950750493
TGLLDGLATL	10	Unmodified	_TGLLDGLATL_					0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF;REV__ENSG00000136052|ENST00000258538|SLC41A2	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	487.28185737815005	2	487.281857	972.549162	1.1417	0.00055631	-1.2887	-0.00062796	-0.14703	-7.1645E-05	487.2813492366479	20.622	0.14465	20.608	20.559	20.704	-0.014088	1278	76	0.85049206	0.04611945	0.8489726	345.4812	0	18.734344						165	7	4	NaN	NaN	NaN	0.37681	1	7537	7537		20.449	0	1	22030	+		26400	9558;9646	15183	15617	21058	21058					0.06178920866148019
TGLQGFLVF	9	Unmodified	_TGLQGFLVF_					0	0	0		nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000243910|ENST00000490341|TUBA4B	nc|ENSG00000167552|Q71U36-2|TUBA1A	nc|ENSG00000167552|Q71U36-2|TUBA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.540394295	1	981.540394	980.533118	1.1266	0.0011058	1.3544	0.0013294	2.481	0.0024352	981.5414662500779	35.482	0.096489	35.482	35.458	35.554	0	186	64	1.5086359	0.03724277	1.5086359	306.38354	0	7.563507						160	5	3	NaN	NaN	NaN	0.032826	1	7905	7905		55.413	13.629	1	17573			26401	2376	15184	15618	21059	21059					0.04207259419899856
TGLQGFLVF	9	Unmodified	_TGLQGFLVF_					0	0	0		nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000243910|ENST00000490341|TUBA4B	nc|ENSG00000167552|Q71U36-2|TUBA1A	nc|ENSG00000167552|Q71U36-2|TUBA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.540394295	1	981.540394	980.533118	1.0229	0.001004	1.0893	0.0010692	2.1122	0.0020732	981.5420887981884	35.48	0.12065	35.481	35.457	35.577	0.00052643	186	64	1.5086359	0.037238836	1.5071164	306.38354	0	7.562683						151	6	3	NaN	NaN	NaN	0.03618	1	7736	7736		52.78	19.081	1	17131			26402	2376	15184	15618	21060	21060					0.04207259419899856
TGLQTLDSAA	10	Unmodified	_TGLQTLDSAA_					0	0	0		ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4945663144	1	976.494566	975.48729	2.4088	0.0023522	5.4062	0.0052791	7.8151	0.0076314	976.499722983748	25.853	0.26539	25.853	25.684	25.95	0	294	94	1.4446791	0.055158734	1.4446791	293.41583	0	11.202789						423	12	3	NaN	NaN	NaN	0.12158	1	7763	7763		42.995	5.6924	1	67200			26403	4175	15185	15619	21061	21061					-0.0014343055299832486
TGNSSSVL	8	Unmodified	_TGNSSSVL_					0	0	0			REV__ENSG00000091137|ENST00000644269|SLC26A4	REV__ENSG00000091137|ENST00000644269|SLC26A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.3784739241001	1	764.378474	763.371197	2.0615	0.0015758	5.3215	0.0040676	7.383	0.0056434	764.3823672272746	21.73	0.28912	21.73	21.681	21.97	0	543	130	1.296287	0.0773052	1.296287	264.29398	0	15.761414						544	13	2	NaN	NaN	NaN	0.67593	1	4260	4260		20.555	0	1	157090	+		26404	8732	15186	15620	21062	21062					-0.01995329333033169
TGNSSSVL	8	Unmodified						0	0	0			REV__ENSG00000091137|ENST00000644269|SLC26A4	REV__ENSG00000091137|ENST00000644269|SLC26A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.378474	763.371197	2.0615	0.0015758	5.3215	0.0040676	7.383	0.0056434	764.3823672272746	21.73	0.28912	21.73	21.681	21.97	0	543	130	1.296287	0.0773052	1.296287	264.29398		15.761414	0.0070108	0.00010396	-0.00013812	NaN	20.555	544	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157090	+		26405	8732	15186	15620							-0.01995329333033169
TGNSSSVL	8	Unmodified						0	0	0			REV__ENSG00000091137|ENST00000644269|SLC26A4	REV__ENSG00000091137|ENST00000644269|SLC26A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	764.378474	763.371197	1.8747	0.001433	4.9849	0.0038103	6.8596	0.0052434	764.3822403862044	21.729	0.28893	21.715	21.643	21.932	-0.013897	540	115	1.2980826	0.06829059	1.2965631	264.6601		13.923462	-0.0070108	-0.00015332	0.00013812	NaN	20.555	542	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157980	+		26406	8732	15186	15620							-0.01995329333033169
TGPGGAEPG	9	Unmodified	_TGPGGAEPG_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant;KMT2B|p.K553Nfs*52|1|0.25|ENSG00000272333|chr19:35720997-35720997|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3366091094	1	742.336609	741.329333	1.721	0.0012775	5.5222	0.0040993	7.2432	0.0053769	742.3405828769937	25.298	0.14478	25.298	25.25	25.395	0	603	94	1.2603331	0.055838943	1.2603331	257.09833	0	11.390701						217	7	2	NaN	NaN	NaN	0.41766	1	3927	3927		13.003	3.2568	1	23702			26407	6174	15187	15621	21063	21063					-0.05167885021569418
TGPGGAEPG	9	Unmodified						0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant;KMT2B|p.K553Nfs*52|1|0.25|ENSG00000272333|chr19:35720997-35720997|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	742.336609	741.329333	3.4562	0.0025657	5.3794	0.0039933	8.8356	0.006559	742.3415197679251	25.346	0.072407	25.334	25.286	25.358	-0.012011	651	31	1.2315145	0.018027067	1.229995	251.21957		3.6773682	0.017974	-9.1467E-05	-0.015169	NaN	13.003	38	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1691.2			26408	6174	15187	15621							-0.05167885021569418
TGPGGDPR	8	Unmodified	_TGPGGDPR_					0	0	0		ENST00000559946.1_1_14:103021740-103021929:+|nuORF	ENST00000559946.1_1_14:103021740-103021929:+|nuORF	ENST00000559946.1_1_14:103021740-103021929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3634925619	1	756.363493	755.356216	1.6454	0.0012446	-6.4244	-0.0048592	-4.779	-0.0036147	756.3592424190874	24.067	0.14476	24.055	24.006	24.151	-0.012749	576	79	1.2765218	0.046735168	1.2750024	260.31296	0	9.5303955						182	7	2	NaN	NaN	NaN	0.84455	1	4084	4084		2.7852	0	1	18299			26409	7591	15188	15622	21064	21064					-0.031247764103909503
TGPGGVVG	8	Unmodified	_TGPGGVVG_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139749436-139750950:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	322.1741213362	2	322.174121	642.33369	2.4185	0.00077918	7.0777	0.0022803	9.4962	0.0030594	322.177261725858	26.191	0.072392	26.191	26.119	26.191	0	1551	25	0.6818875	0.014895678	0.6818875	278.96786	0	6.093994						36	4	2	NaN	NaN	NaN	0.8439	1	1785	1785		3.1533	0	1	2587.9			26410	5094	15189	15623	21065	21065					-0.0017837580799096031
TGPNLHGLFGR	11	Unmodified	_TGPNLHGLFGR_					0	0	0		CON__P62894;ENSG00000172115|ENST00000305786|CYCS	CON__P62894	CON__P62894	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.2122399325666	3	390.21224	1167.61489	1.162	0.00045343	-1.2567	-0.0004904	-0.094744	-3.697E-05	390.21155984343113	20.501	0.16841	20.501	20.453	20.622	0	1431	40	0.75620437	0.02409923	0.75620437	459.69098	0	14.64978						182	8	4	NaN	NaN	NaN	0.26193	1	15407	15407		26.989	14.84	1	37346		+	26411	202	15190	15624	21066	21066					0.03778754831682818
TGPNLHGLFGR	11	Unmodified	_TGPNLHGLFGR_					0	0	0		CON__P62894;ENSG00000172115|ENST00000305786|CYCS	CON__P62894	CON__P62894	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.2122399325666	3	390.21224	1167.61489	1.1925	0.00046534	-0.67931	-0.00026508	0.51322	0.00020027	390.21202411103167	20.549	0.16868	20.535	20.511	20.68	-0.014141	1431	40	0.75620437	0.02409923	0.7546849	459.69098	0	14.64978						185	8	3	NaN	NaN	NaN	0.55071	1	14871	14871		16.659	12.758	1	42173		+	26412	202	15190	15624	21067	21067					0.03778754831682818
TGPPGPAAT	9	Unmodified	_TGPPGPAAT_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.3886446798998	1	768.388645	767.381368	1.3432	0.0010321	-2.3649	-0.0018172	-1.0217	-0.00078505	768.3870594840276	22.211	0.0965	22.197	22.173	22.27	-0.013731	1302	58	0.8357362	0.03506595	0.8342168	170.37872	0	7.148773						140	5	3	NaN	NaN	NaN	0.6907	1	4246	4246		0	0	1	20399			26413	4214	15191	15625	21068	21068					-0.011627216078295532
TGPQAAGN	8	Unmodified	_TGPQAAGN_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2;REV__GAS2L2|p.T337Pfs*25|1|0.38|ENSG00000270765|chr17:35747093-35747093|G/-|frameshift_variant	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.3369434604	1	715.336943	714.329667	0.54558	0.00039028	-9.2102	-0.0065884	-8.6646	-0.0061981	715.3305845103607	40.681	0.096012	40.681	40.609	40.705	0	720	52	1.1900014	0.030726314	1.1900014	242.9178	0	6.2722473						120	5	2	NaN	NaN	NaN	0.84692	1	3503	3503		1.4396	0	1	13559	+		26414	11410;12996	15192	15626	21069	21069					-0.03892465301714765
TGPSQTRPE	9	Unmodified	_TGPSQTRPE_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.74088802045	2	486.740888	971.467223	1.9208	0.00093493	6.2346	0.0030346	8.1554	0.0039695	486.7436658711581	19.18	0.047939	19.18	19.156	19.204	0	1302	46	0.8357362	0.027683675	0.8357362	339.49243	0	11.245636						55	3	2	NaN	NaN	NaN	0.48181	1	7647	7647		10.36	0.61416	1	3694.6	+		26415	10337	15193	15627	21070	21070					-0.01965181492960255
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2925594502	2	543.292559	1084.57057	1.5078	0.00081916	-1.5111	-0.00082096	-0.0033205	-1.804E-06	543.2917229134716	29.57	0.16891	29.57	29.522	29.691	0	1278	73	0.85049206	0.044238746	0.85049206	344.98325	0	17.944458						313	8	4	NaN	NaN	NaN	0.045904	1	12178	12178		48.65	20.861	1	58004			26416	432	15194	15628	21071	21071					0.03166350685501129
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2925594502	2	543.292559	1084.57057	1.1649	0.00063288	-0.75747	-0.00041153	0.40743	0.00022135	543.2920091402243	29.593	0.16889	29.586	29.538	29.707	-0.0070667	1275	67	0.85233563	0.04055661	0.8508162	345.73105	0	16.450897						293	8	4	NaN	NaN	NaN	0.17328	1	11862	11862		27.046	6.5978	1	54154			26417	432	15194	15628	21072	21072					0.03166350685501129
TGQLEQTLS	9	Unmodified	_TGQLEQTLS_					0	0	0			REV__ENSG00000214456|ENST00000381848|PLIN5	REV__ENSG00000214456|ENST00000381848|PLIN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4945663144	1	976.494566	975.48729	2.426	0.0023689	6.125	0.0059811	8.551	0.00835	976.5012073595875	25.853	0.21722	25.841	25.696	25.914	-0.0116	288	100	1.4482387	0.058698654	1.4467193	294.1388	0	11.921753						401	10	4	NaN	NaN	NaN	0.10956	1	7605	7605		34.439	5.5432	1	63028	+		26418	11289	15195	15629	21073	21073					-0.0014343055299832486
TGQLEQTLS	9	Unmodified						0	0	0			REV__ENSG00000214456|ENST00000381848|PLIN5	REV__ENSG00000214456|ENST00000381848|PLIN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	976.494566	975.48729	2.426	0.0023689	6.125	0.0059811	8.551	0.00835	976.5012073595875	25.853	0.21722	25.841	25.696	25.914	-0.0116	288	100	1.4482387	0.058698654	1.4467193	294.1388		11.921753	-0.0059275	0.00038009	0.0010201	NaN	34.439	401	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63028	+		26419	11289	15195	15629							-0.0014343055299832486
TGRGGGGA	8	Unmodified	_TGRGGGGA_					0	0	0		ENST00000308418.8_1_11:65487749-65488293:-|nuORF;ENST00000528220.1_1_11:65487749-65488268:-|nuORF	ENST00000308418.8_1_11:65487749-65488293:-|nuORF	ENST00000308418.8_1_11:65487749-65488293:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3110630609	1	632.311063	631.303787	1.4499	0.00091679	-3.9038	-0.0024684	-2.4539	-0.0015516	632.3085174433751	27.471	0.072422	27.471	27.446	27.519	0	732	40	1.1827712	0.023504138	1.1827712	242.03851	0	4.8098297						81	4	2	NaN	NaN	NaN	0.84945	1	1507	1507		0	0	1	7850.2			26420	6437	15196	15630	21074	21074					-0.02661314753345323
TGRKFCKQG	9	Unmodified	_TGRKFCKQG_					0	0	0		ENST00000595125.5_1_19:50432043-50432519:+|nuORF	ENST00000595125.5_1_19:50432043-50432519:+|nuORF	ENST00000595125.5_1_19:50432043-50432519:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5356600431	1	1024.53566	1023.52838	1.2284	0.0012585	5.0642	0.0051885	6.2926	0.006447	1024.5403593995165	32.103	0.072353	32.099	32.099	32.172	-0.0037575	153	46	1.5281296	0.026562572	1.5266101	310.16168	0	5.3913574						68	4	2	NaN	NaN	NaN	0.6532	1	9327	9327		3.2116	0.42642	1	6190.6			26421	7750	15197	15631	21075	21075					0.017560520054985318
TGSCGCYS	8	Unmodified	_TGSCGCYS_					0	0	0		ENST00000540494.5_1_2:10930010-10931938:-|nuORF	ENST00000540494.5_1_2:10930010-10931938:-|nuORF	ENST00000540494.5_1_2:10930010-10931938:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.13073892725	2	389.130739	776.246925	0.83939	0.00032663	-2.6202	-0.0010196	-1.7808	-0.00069298	389.12969796243505	41.161	0.072124	41.161	41.161	41.233	0	1503	55	0.711653	0.03344977	0.711653	290.09982	0	13.635559						73	4	2	NaN	NaN	NaN	0.84887	1	4443	4443		0.32989	0	1	3871.2			26422	7494	15198	15632	21076	21076					-0.1501486641637939
TGSFDKAPLE	10	Unmodified	_TGSFDKAPLE_					0	0	0			REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.7665714547	2	532.766571	1063.51859	1.1622	0.0006192	6.6456	0.0035405	7.8078	0.0041597	532.7682473233954	31.67	0.14484	31.67	31.646	31.79	0	1263	85	0.85970795	0.051600754	0.85970795	348.808	0	20.935883						170	7	3	NaN	NaN	NaN	0.6772	1	11279	11279		9.6116	1.3341	1	11791	+		26423	8405	15199	15633	21077	21077					-0.010628575189002731
TGSFDKAPLE	10	Unmodified						0	0	0			REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.766571	1063.51859	1.1622	0.0006192	6.6456	0.0035405	7.8078	0.0041597	532.7682473233954	31.67	0.14484	31.67	31.646	31.79	0	1263	85	0.85970795	0.051600754	0.85970795	348.808		20.935883	-0.033442	0.0013861	-0.0010828	NaN	9.6116	170	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11791	+		26424	8405	15199	15633							-0.010628575189002731
TGSFDKAPLE	10	Unmodified						0	0	0			REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.766571	1063.51859	0.53087	0.00028283	3.9866	0.0021239	4.5175	0.0024068	532.7694671606679	31.741	0.072447	31.737	31.737	31.809	-0.0044155	1257	52	0.86339295	0.031327307	0.8618735	350.3031		12.710388	0.033442	-0.0014471	0.0010828	NaN	9.6116	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4995.9	+		26425	8405	15199	15633							-0.010628575189002731
TGSGFVTS	8	Unmodified	_TGSGFVTS_					0	0	0			REV__CON__Q1RMN8	REV__CON__Q1RMN8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3570102005	1	755.35701	754.349734	0.47558	0.00035924	-3.9253	-0.002965	-3.4498	-0.0026058	755.3535794461297	45.716	0.1921	45.727	45.607	45.799	0.010719	657	49	1.2279087	0.028861642	1.2263893	250.40555	0	5.8857117						90	9	2	NaN	NaN	NaN	0.84727	1	4058	4058		1.2418	0	1	6211.5	+	+	26426	8271	15200	15634	21078	21078					-0.03726714361766881
TGSGGGGPP	9	Unmodified	_TGSGGGGPP_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3103943589	1	686.310394	685.303118	2.3689	0.0016258	-8.6325	-0.0059246	-6.2636	-0.0042988	686.3044445778146	25.564	0.024122	25.564	25.539	25.564	0	1086	64	0.9680805	0.038440287	0.9680805	197.774	0	7.8531647						52	2	2	NaN	NaN	NaN	0.67989	1	2945	2945		0.92586	0	1	4616.8	+		26427	8498	15201	15635	21079	21079					-0.05212154193043261
TGSLLMVL	8	Unmodified	_TGSLLMVL_					0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.4801022241	1	833.480102	832.472826	1.5017	0.0012516	1.0528	0.00087749	2.5545	0.0021291	833.4808271921817	29.835	0.09651	29.828	29.803	29.9	-0.0070667	426	40	1.3661768	0.023247004	1.3646574	278.135	0	4.7327576						57	5	2	NaN	NaN	NaN	0.54545	1	5056	5056		28.667	0	1	4027.6	+		26428	13529	15202	15636	21080	21080					0.0498882576515598
TGSLLMVL	8	Unmodified						0	0	0			REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	REV__tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	833.480102	832.472826	1.5017	0.0012516	1.0528	0.00087749	2.5545	0.0021291	833.4808271921817	29.835	0.09651	29.828	29.803	29.9	-0.0070667	426	40	1.3661768	0.023247004	1.3646574	278.135		4.7327576	-0.0039745	0.00077954	0.00013449	NaN	28.667	57	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4027.6	+		26429	13529	15202	15636							0.0498882576515598
TGSPNGLVL	9	Unmodified	_TGSPNGLVL_					0	0	0			REV__ENST00000571914.1_1_17:79604263-79604362:+|nuORF	REV__ENST00000571914.1_1_17:79604263-79604362:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	857.4727086603001	1	857.472709	856.465432	1.8304	0.0015695	0.49129	0.00042127	2.3217	0.0019908	857.4728923355099	25.612	0.096497	25.6	25.552	25.648	-0.0116	429	52	1.3643885	0.030399919	1.362869	277.64453	0	6.1861877						133	5	3	NaN	NaN	NaN	0.16171	1	5357	5357		27.789	1.6739	1	13324	+		26430	12828	15203	15637	21081	21081					0.03145809489092244
TGSPSPQL	8	Unmodified	_TGSPSPQL_					0	0	0			REV__nc|ENSG00000010704|Q30201-11|HFE	REV__nc|ENSG00000010704|Q30201-11|HFE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.3992093662001	1	786.399209	785.391933	1.5749	0.0012385	5.0697	0.0039868	6.6446	0.0052253	786.4029717103901	26.988	0.21717	26.988	26.94	27.157	0	486	82	1.3303722	0.04841113	1.3303722	271.10916	0	9.865448						297	10	3	NaN	NaN	NaN	0.83211	1	4569	4569		4.9097	0	1	37414	+		26431	13077	15204	15638	21082	21082					-0.009347389533672867
TGSSGFIL	8	Unmodified	_TGSSGFIL_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;CSMD3|p.N1603K|1|0.1|ENSG00000164796|chr8:112506777-112506777|G/C|missense_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.409045771	1	781.409046	780.401769	0.93685	0.00073206	5.4127	0.0042295	6.3496	0.0049616	781.4128432716543	32.055	0.14479	32.051	32.003	32.148	-0.0037613	483	76	1.3321642	0.04481542	1.3306447	271.50418	0	9.1336975						177	7	2	NaN	NaN	NaN	0.75682	1	4415	4415		15.013	0	1	18017			26432	232;7972	15205	15639	21083	21083					0.0027844905199572167
TGTGGVFL	8	Unmodified	_TGTGGVFL_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3984810847002	1	751.398481	750.391205	0.81737	0.00061417	4.6753	0.003513	5.4927	0.0041272	751.4015515831477	31.838	0.24136	31.833	31.737	31.978	-0.0044155	570	67	1.2801172	0.039532423	1.2785977	261.07687	0	8.062561						290	11	3	NaN	NaN	NaN	0.76633	1	3984	3984		13.737	0	1	26681	+		26433	10679	15206	15640	21084	21084					0.00602466397583612
TGTSGAGG	8	Unmodified	_TGTSGAGG_					0	0	0			REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF	REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2681951932002	1	607.268195	606.260919	1.6915	0.0010272	4.9331	0.0029957	6.6245	0.0040229	607.2725566095712	17.861	0.095903	17.861	17.837	17.933	0	1167	52	0.91857195	0.03122592	0.91857195	188.13794	0	6.395569						71	5	2	NaN	NaN	NaN	0.84945	1	729	729		0	0	1	6037.1	+		26434	12648	15207	15641	21085	21085					-0.0579612960140139
TGTTGAAC	8	Unmodified	_TGTTGAAC_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.14724627119995	2	341.147246	680.27994	1.4563	0.00049681	-2.3073	-0.00078713	-0.85102	-0.00029032	341.14712184249817	28.218	0.21718	28.209	28.137	28.354	-0.0089779	1518	76	0.7023569	0.0464707	0.70083743	287.00906	0	18.989655						347	10	5	NaN	NaN	NaN	0.84692	1	2757	2757		1.4396	0	1	51382	+		26435	11183	15208	15642	21086	21086					-0.07298916302033831
TGVAHSSG	8	Unmodified	_TGVAHSSG_					0	0	0		ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3369434604001	1	715.336943	714.329667	0.86572	0.00061928	-8.9747	-0.0064199	-8.109	-0.0058006	715.3305902976275	40.39	0.24039	40.397	40.253	40.493	0.0067558	708	70	1.1972283	0.04154861	1.1957089	244.39308	0	8.48143						285	11	2	NaN	NaN	NaN	0.8439	1	3431	3431		3.1533	1.7138	1	38297			26436	6419	15209	15643	21087	21087					-0.03892465301703396
TGVAHSSG	8	Unmodified	_TGVAHSSG_					0	0	0		ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3369434604001	1	715.336943	714.329667	0.59036	0.00042231	-8.4011	-0.0060097	-7.8108	-0.0055873	715.3313819184622	41.713	0.12033	41.721	41.721	41.841	0.0082588	690	64	1.2080631	0.037923574	1.2065437	246.6048	0	7.7414246						143	6	2	NaN	NaN	NaN	0.8439	1	3433	3433		3.1533	1.7138	1	16135			26437	6419	15209	15643	21088	21088					-0.03892465301703396
TGVAHSSG	8	Unmodified	_TGVAHSSG_					0	0	0		ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3369434604001	1	715.336943	714.329667	1.1057	0.00079093	-8.3115	-0.0059455	-7.2058	-0.0051546	715.3317284111686	39.066	0.14477	39.071	39.023	39.168	0.0046806	693	112	1.2062578	0.06682503	1.2047384	246.23627	0	13.641129						260	7	3	NaN	NaN	NaN	0.84727	1	3434	3434		1.2418	0.31598	1	28686			26438	6419	15209	15643	21089	21089					-0.03892465301703396
TGVAHSSG	8	Unmodified						0	0	0		ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	ENST00000304301.10_1_16:4745384-4745600:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	715.336943	714.329667	0.51367	0.00036744	-8.5095	-0.0060872	-7.9958	-0.0057197	715.3316192993433	40.368	0.072079	40.368	40.344	40.416	0	708	49	1.1972283	0.028901935	1.1972283	244.39307		5.899811	-0.014422	0.00022724	0.00075972	NaN	3.1533	97	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10613			26439	6419	15209	15643							-0.03892465301703396
TGVIALIK	8	Unmodified	_TGVIALIK_					0	0	0			REV__nc|ENSG00000165240|Q04656-4|ATP7A	REV__nc|ENSG00000165240|Q04656-4|ATP7A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	407.77347124005007	2	407.773471	813.53239	1.5324	0.00062486	-2.2038	-0.00089865	-0.67143	-0.00027379	407.7725256280699	19.876	0.072088	19.861	19.837	19.909	-0.014141	1434	61	0.75435036	0.037065744	0.7528309	307.26077	0	15.097565						73	4	2	NaN	NaN	NaN	0.77489	1	4833	4833		12.588	0	1	6910.5	+		26440	10374	15210	15644	21090	21090					0.11816464770856783
TGVIALIK	8	Unmodified						0	0	0			REV__nc|ENSG00000165240|Q04656-4|ATP7A	REV__nc|ENSG00000165240|Q04656-4|ATP7A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	407.773471	813.53239	1.5324	0.00062486	-2.2038	-0.00089865	-0.67143	-0.00027379	407.7725256280699	19.876	0.072088	19.861	19.837	19.909	-0.014141	1434	61	0.75435036	0.037065744	0.7528309	307.26077		15.097565	0.040626	-9.2139E-06	0.0010946	NaN	12.588	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6910.5	+		26441	10374	15210	15644							0.11816464770856783
TGVINVQRMR	10	Unmodified	_TGVINVQRMR_					0	0	0			REV__nc|ENSG00000069188|Q58EX2-2|SDK2	REV__nc|ENSG00000069188|Q58EX2-2|SDK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.88887990586665	3	391.88888	1172.64481	1.5124	0.00059269	-0.59968	-0.00023501	0.91271	0.00035768	391.8887132771082	19.01	0.12008	18.996	18.924	19.044	-0.014059	1482	37	0.72465914	0.022287786	0.7231397	440.49283	0	13.547913						143	6	3	NaN	NaN	NaN	0.66626	1	15027	15027		5.6972	1.7885	1	17931	+		26442	8562	15211	15645	21091	21091					0.06539370505379338
TGWEGSDMGP	10	Unmodified	_TGWEGSDMGP_					0	0	0			REV__ENST00000490965.1_1_2:201983790-201983847:+|nuORF	REV__ENST00000490965.1_1_2:201983790-201983847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7056566071001	2	518.705657	1035.39676	1.1211	0.00058152	4.9307	0.0025576	6.0517	0.0031391	518.708946036175	29.256	0.16891	29.248	29.224	29.393	-0.0077229	1317	61	0.8265074	0.0369215	0.82498795	335.45398	0	14.985291						338	8	5	NaN	NaN	NaN	0.62764	1	9783	9783		13.003	0.95414	1	58761	+		26443	12460	15212	15646	21092	21092					-0.11952222872923812
TGYAHAAG	8	Unmodified	_TGYAHAAG_					0	0	0			REV__ENST00000449549.3_1_16:67184143-67184437:-|nuORF	REV__ENST00000449549.3_1_16:67184143-67184437:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	747.3420288383	1	747.342029	746.334752	1.6737	0.0012508	-1.2747	-0.00095262	0.39899	0.00029818	747.3414390203812	24.236	0.16898	24.224	24.199	24.368	-0.012747	618	49	1.2513325	0.02880311	1.2498131	255.23125	0	5.8749084						122	8	2	NaN	NaN	NaN	0.84651	1	3914	3914		1.6704	0	1	9681.2	+		26444	12227	15213	15647	21093	21093					-0.04856161439090556
THCQTCHVSPE	11	Unmodified	_THCQTCHVSPE_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.5061068334667	3	414.506107	1240.49649	1.5297	0.00063406	-7.3086	-0.0030295	-5.7789	-0.0023954	414.5028661971554	19.228	0.096027	19.228	19.204	19.3	0	1416	31	0.76547134	0.018528879	0.76547134	465.0055	0	11.255829						84	5	3	NaN	NaN	NaN	0.77544	1	17533	17533		0.29401	0.080273	1	6427.2			26445	3745	15214	15648	21094	21094					-0.11413728530624212
THDAALAYEA	10	Unmodified	_THDAALAYEA_					0	0	0			REV__nc|ENSG00000116791|Q08257-3|CRYZ	REV__nc|ENSG00000116791|Q08257-3|CRYZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.4898152874998	1	1061.48982	1060.48254	1.258	0.0013354	3.0157	0.0032012	4.2737	0.0045365	1061.4951388074269	29.207	0.096571	29.2	29.151	29.248	-0.0077209	165	73	1.5210435	0.042515874	1.5195241	308.5804	0	8.625336						148	5	2	NaN	NaN	NaN	0.72631	1	10862	10862		6.2502	0.55606	1	15019	+		26446	9230	15215	15649	21095	21095					-0.045283146957672216
THGASGLL	8	Unmodified	_THGASGLL_					0	0	0			REV__ENST00000480292.5_1_3:158520095-158542024:+|nuORF	REV__ENST00000480292.5_1_3:158520095-158542024:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.20595278085005	2	378.205953	754.397353	1.7886	0.00067647	3.5075	0.0013266	5.2962	0.002003	378.20749904777745	55.028	0.024021	55.028	55.004	55.028	0	1509	28	0.70793515	0.01673305	0.70793515	288.72903	0	6.824524						28	2	2	NaN	NaN	NaN	0.84727	1	4147	4147		1.2418	0	1	3070.6	+		26447	9274	15216	15650	21096	21096					0.010329846291028844
THGASIWG	8	Unmodified	_THGASIWG_					0	0	0			REV__ENST00000212355.8_1_1:92327195-92351509:-|nuORF	REV__ENST00000212355.8_1_1:92327195-92351509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.7035772674001	2	414.703577	827.392602	1.8031	0.00074775	5.8569	0.0024289	7.6599	0.0031766	414.7065734918935	20.069	0.096075	20.069	20.045	20.141	0	1404	28	0.77288127	0.016666055	0.77288127	314.7213	0	6.786499						41	5	2	NaN	NaN	NaN	0.82332	1	5110	5110		6.0903	0.62448	1	2706.5	+		26448	11453	15217	15651	21097	21097					-0.027998995136499616
THGGAVLP	8	Unmodified	_THGGAVLP_					0	0	0		tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.20849546979997	2	376.208495	750.402438	2.0794	0.0007823	-6.1134	-0.0022999	-4.034	-0.0015176	376.20660674386556	25.998	0.048264	25.998	25.974	26.022	0	1440	37	0.7506418	0.02225393	0.7506418	306.17587	0	9.077057						61	3	3	NaN	NaN	NaN	0.84207	1	4063	4063		3.5732	0.41988	1	4011.5			26449	13967	15218	15652	21098	21098					0.017252884917070332
THGPIGGG	8	Unmodified	_THGPIGGG_					0	0	0			REV__ENST00000505907.1_1_4:6622802-6623009:+|nuORF	REV__ENST00000505907.1_1_4:6622802-6623009:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3471142162002	1	695.347114	694.339838	1.911	0.0013288	4.0324	0.0028039	5.9434	0.0041327	695.3505994370267	36.998	0.023998	37	37	37.024	0.0022507	690	34	1.2080631	0.019856215	1.2065437	246.73828	0	4.055481						37	2	2	NaN	NaN	NaN	0.84945	1	3056	3056		0	0	1	2252.3	+		26450	12536	15219	15653	21099	21099					-0.019558575764563102
THGSGGGG	8	Unmodified	_THGSGGGG_					0	0	0		ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2637785173001	1	629.263779	628.256502	1.4754	0.00092844	-9.4372	-0.0059385	-7.9618	-0.0050101	629.2575463870281	31.982	0.14476	31.979	31.93	32.075	-0.0037594	1167	28	0.91857195	0.016522408	0.9170525	187.99295	0	3.3814545						41	7	2	NaN	NaN	NaN	0.84887	1	1278	1278		0.32989	0	1	2658.8			26451	6427	15220	15654	21100	21100					-0.07249594024324324
THGSGGGG	8	Unmodified						0	0	0		ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	ENST00000306085.10_3_7:100728844-100730655:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	629.263779	628.256502	1.5641	0.00098425	-6.6227	-0.0041674	-5.0586	-0.0031832	629.2591869750595	32.273	0.048267	32.273	32.273	32.321	0	1164	31	0.9204082	0.01836127	0.9204082	188.36873		3.757782	0.1472	0.0010187	0.0016778	NaN	0.32989	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2119.5			26452	6427	15220	15654							-0.07249594024324324
THGSGPGA	8	Unmodified	_THGSGPGA_					0	0	0		ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3107287099	1	683.310729	682.303452	1.8517	0.0012653	-7.0794	-0.0048375	-5.2278	-0.0035722	683.3051942560635	27.953	0.072382	27.953	27.929	28.001	0	621	67	1.2495319	0.03963399	1.2495319	255.29506	0	8.097717						79	4	2	NaN	NaN	NaN	0.8439	1	2884	2884		3.1533	1.7138	1	6219.9			26453	5298	15221	15655	21101	21101					-0.05040734473197972
THGSSFCA	8	Unmodified	_THGSSFCA_					0	0	0			REV__ENST00000502346.1_1_5:82352385-82352481:-|nuORF	REV__ENST00000502346.1_1_5:82352385-82352481:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	809.3246642146	1	809.324664	808.317388	1.734	0.0014033	-4.9513	-0.0040072	-3.2174	-0.0026039	809.3209695440876	20.573	0.28877	20.573	20.429	20.718	0	552	55	1.2908988	0.032334447	1.2908988	262.93695	0	6.586029						337	13	3	NaN	NaN	NaN	0.82332	1	4860	4860		6.0903	0.62448	1	32930	+		26454	12519	15222	15656	21102	21102					-0.09443825036407816
THIDWSLDSK	10	Unmodified	_THIDWSLDSK_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2960273859001	2	601.296027	1200.5775	1.2051	0.00072462	-10.405	-0.0062563	-9.1995	-0.0055316	601.2919457193964	23.103	0.14448	23.09	22.993	23.138	-0.013294	1161	64	0.9222442	0.03856486	0.92072475	373.6342	0	15.624023						150	7	3	NaN	NaN	NaN	0.5917	1	15840	15840		15.463	1.5139	1	19225			26455	5988	15223	15657	21103	21103					-0.014763812245746522
THIDWSLDSK	10	Unmodified						0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.296027	1200.5775	1.6959	0.0010197	-8.3114	-0.0049976	-6.6155	-0.0039779	601.2920782134807	23.007	0.12026	23.007	22.983	23.103	0	1161	64	0.9222442	0.03856486	0.9222442	373.6342		15.623993	-0.041167	0.0010161	0.00075972	NaN	15.463	164	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19966			26456	5988	15223	15657							-0.014763812245746522
THKQEQGVQLC	11	Unmodified	_THKQEQGVQLC_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.2117997229001	3	424.2118	1269.61357	1.2743	0.00054057	7.399	0.0031387	8.6733	0.0036793	424.2150587462058	12.918	0.071912	12.909	12.837	12.909	-0.00947	1449	37	0.74507743	0.022261143	0.743558	452.50253	0	13.519714						52	4	2	NaN	NaN	NaN	0.72342	1	17412	17412		2.5605	0	1	4363.2	+		26457	8748	15224	15658	21104	21104					-0.010452473193254264
THLESAVLR	9	Unmodified	_THLESAVLR_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2905480775	2	513.290548	1024.56654	2.1272	0.0010919	-2.0255	-0.0010397	0.10169	5.2196E-05	513.2896007348136	15.582	0.16811	15.582	15.534	15.702	0	1275	46	0.85233563	0.027650714	0.85233563	345.9849	0	11.224121						294	8	5	NaN	NaN	NaN	0.14301	1	9565	9565		29.598	0	1	81128	+		26458	9113	15225	15659	21105	21105					0.055242611917947215
THLPGPSLFHP	11	Unmodified	_THLPGPSLFHP_					0	0	0		ENST00000374142.8_2_1:27180355-27180478:+|nuORF	ENST00000374142.8_2_1:27180355-27180478:+|nuORF	ENST00000374142.8_2_1:27180355-27180478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.5487406171667	3	401.548741	1201.62439	1.535	0.00061638	0.868	0.00034854	2.403	0.00096492	401.54957606753976	14.141	0.071957	14.13	14.058	14.13	-0.010673	1461	61	0.7376554	0.037126124	0.73613596	448.2672	0	22.561249						71	4	2	NaN	NaN	NaN	0.64343	1	15879	15879		5.2847	0	1	5908.6			26459	6686	15226	15660	21106	21106					0.03164523117220597
THLYSGET	8	Unmodified	_THLYSGET_					0	0	0		ENST00000360472.8_1_1:160183890-160184079:+|nuORF	ENST00000360472.8_1_1:160183890-160184079:+|nuORF	ENST00000360472.8_1_1:160183890-160184079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.2114320892501	2	454.211432	906.408311	0.069111	3.1391E-05	2.8833	0.0013096	2.9524	0.001341	454.21305166360605	35.217	0.24129	35.217	35.144	35.385	0	1410	43	0.76917666	0.025937617	0.76917666	312.76746	0	10.5469055						134	11	2	NaN	NaN	NaN	0.82797	1	6181	6181		5.4659	0	1	13370			26460	6598	15227	15661	21107	21107					-0.04863657787268494
THLYSGET	8	Unmodified						0	0	0		ENST00000360472.8_1_1:160183890-160184079:+|nuORF	ENST00000360472.8_1_1:160183890-160184079:+|nuORF	ENST00000360472.8_1_1:160183890-160184079:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	454.211432	906.408311	0.7026	0.00031913	3.6907	0.0016763	4.3933	0.0019955	454.2132498160431	35.215	0.12069	35.215	35.167	35.287	-4.5776E-05	1407	49	0.77102906	0.02963978	0.7695096	313.5207		12.052307	-0.00071841	0.00038648	0.00016647	NaN	5.4659	152	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14724			26461	6598	15227	15661							-0.04863657787268494
THPETGNDHD	10	Unmodified	_THPETGNDHD_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.4446560089	1	1122.44466	1121.43738	1.6643	0.0018681	-0.020338	-2.2829E-05	1.6439	0.0018452	1122.444233736363	24.526	0.096443	24.514	24.514	24.61	-0.012392	123	46	1.5458313	0.026540041	1.5443119	313.3902	0	5.3805237						85	5	2	NaN	NaN	NaN	0.77665	1	13320	13320		1.3312	0	1	5616.8	+		26462	11094	15228	15662	21108	21108					-0.11848165228934704
THPETGNDHD	10	Unmodified	_THPETGNDHD_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.4446560089	1	1122.44466	1121.43738	1.7179	0.0019283	2.6269	0.0029486	4.3449	0.0048769	1122.4478518669905	24.478	0.096537	24.465	24.368	24.465	-0.012747	123	49	1.5458313	0.028304815	1.5443119	313.3902	0	5.738312						78	5	2	NaN	NaN	NaN	0.77665	1	13321	13321		1.3312	0.089322	1	5533	+		26463	11094	15228	15662	21109	21109					-0.11848165228934704
THPGGAAA	8	Unmodified	_THPGGAAA_					0	0	0		ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.331464152	1	681.331464	680.324188	1.6844	0.0011476	-5.987	-0.0040792	-4.3026	-0.0029315	681.327377920567	19.37	0.12015	19.356	19.284	19.404	-0.014141	711	46	1.1954219	0.027102828	1.1939025	244.2537	0	5.5377655						115	6	2	NaN	NaN	NaN	0.84876	1	2764	2764		0.39566	0	1	7988.1			26464	7311	15229	15663	21110	21110					-0.028761440935340943
THPMPMNY	8	Unmodified	_THPMPMNY_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.71223042895	2	495.71223	989.409908	1.7377	0.00086139	4.6172	0.0022888	6.3548	0.0031502	495.7135992239864	16.011	0.16765	15.999	15.903	16.07	-0.012611	1329	52	0.81912065	0.0313918	0.8176012	332.65863	0	12.748718						172	8	3	NaN	NaN	NaN	0.77489	1	8012	8012		12.588	1.9829	1	14559			26465	2976	15230	15664	21111	21111					-0.0852206329452656
THRAGGSG	8	Unmodified	_THRAGGSG_					0	0	0			REV__ENST00000599720.5_1_19:44276206-44284904:-|nuORF	REV__ENST00000599720.5_1_19:44276206-44284904:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3590758860003	1	742.359076	741.351799	0.95763	0.0007109	-0.124	-9.2051E-05	0.83363	0.00061885	742.3586315901722	30.777	0.096556	30.777	30.728	30.825	0	1344	91	0.8098828	0.055412292	0.8098828	165.20984	0	11.303665						154	5	2	NaN	NaN	NaN	0.84945	1	3934	3934		0	0	1	14968	+		26466	12956	15231	15665	21112	21112					-0.029222408332657324
THRCMLYLQIL	11	Unmodified	_THRCMLYLQIL_					0	0	0		ENST00000436639.6_1_6:109322603-109322675:-|nuORF	ENST00000436639.6_1_6:109322603-109322675:-|nuORF	ENST00000436639.6_1_6:109322603-109322675:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.8703250197001	2	695.870325	1389.7261	0.99291	0.00069093	6.3115	0.004392	7.3044	0.0050829	695.8744859267948	30.608	0.1448	30.608	30.56	30.704	0	1026	64	1.0046607	0.038386524	1.0046607	406.39392	0	15.527679						163	7	3	NaN	NaN	NaN	0.37105	1	19980	19980		23.086	3.7494	1	14494			26467	6995	15232	15666	21113	21113					0.046823101531344946
THSGNAEFKGA	11	Unmodified	_THSGNAEFKGA_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5225123994	1	1118.52251	1117.51524	1.7709	0.0019808	-6.0279	-0.0067423	-4.2569	-0.0047615	1118.515350368717	27.133	0.096531	27.133	27.109	27.205	0	129	46	1.5422925	0.026540041	1.5422925	312.68613	0	5.3807373						96	5	3	NaN	NaN	NaN	0.67738	1	13568	13568		8.9416	2.0784	1	6570.5	+		26468	10023	15233	15667	21114	21114					-0.03882107572894711
THSGNAEFKGA	11	Unmodified						0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1118.52251	1117.51524	1.7709	0.0019808	-6.0279	-0.0067423	-4.2569	-0.0047615	1118.515350368717	27.133	0.096531	27.133	27.109	27.205	0	129	46	1.5422925	0.026540041	1.5422925	312.68613		5.3807373	-0.0066061	0.00083427	-0.00012504	NaN	8.9416	96	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6570.5	+		26469	10023	15233	15667							-0.03882107572894711
THSGNAEFKGA	11	Unmodified						0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1118.52251	1117.51524	1.5144	0.0016939	-7.4706	-0.008356	-5.9562	-0.0066621	1118.5133004307252	27.156	0.096518	27.146	27.122	27.218	-0.010126	126	43	1.544062	0.024771929	1.5425426	313.0449		5.0223083	0.0066061	-0.00077946	0.00012504	NaN	8.9416	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5843.8	+		26470	10023	15233	15667							-0.03882107572894711
THSSRDSYR	9	Unmodified	_THSSRDSYR_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7601434061	2	554.760143	1107.50573	0.87596	0.00048595	-9.7406	-0.0054037	-8.8646	-0.0049178	554.7558338084522	35.868	0.16874	35.868	35.771	35.94	0	1236	46	0.876284	0.027617872	0.876284	355.35287	0	11.1996765						161	7	3	NaN	NaN	NaN	0.33629	1	13159	13159		16.584	3.1211	1	23341			26471	1976	15234	15668	21115	21115					-0.04371875858441854
THTDGIFP	8	Unmodified	_THTDGIFP_					0	0	0		ENST00000314397.8_1_5:177576560-177576668:-|nuORF	ENST00000314397.8_1_5:177576560-177576668:-|nuORF	ENST00000314397.8_1_5:177576560-177576668:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.2165174671501	2	444.216517	886.418482	1.1873	0.00052743	-0.53291	-0.00023673	0.65442	0.0002907	444.2162378126433	22.525	0.12058	22.525	22.501	22.621	0	1296	52	0.8394264	0.031354427	0.8394264	341.4477	0	12.753815						102	6	2	NaN	NaN	NaN	0.84692	1	5890	5890		1.4396	0	1	11358			26472	6463	15235	15669	21116	21116					-0.029270500620327766
THTDGIFP	8	Unmodified						0	0	0		ENST00000314397.8_1_5:177576560-177576668:-|nuORF	ENST00000314397.8_1_5:177576560-177576668:-|nuORF	ENST00000314397.8_1_5:177576560-177576668:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	444.216517	886.418482	1.0888	0.00048365	-1.0479	-0.00046549	0.040887	1.8162E-05	444.21625638527655	22.548	0.14472	22.535	22.511	22.655	-0.01354	1296	49	0.8394264	0.02951163	0.83790696	341.4477		12.004242	0.0049852	-0.00027209	-0.00075972	NaN	1.4396	122	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10866			26473	6463	15235	15669							-0.029270500620327766
THTLTLYR	8	Unmodified	_THTLTLYR_					0	0	0			REV__ENST00000268795.5_1_16:68025739-68025916:-|nuORF	REV__ENST00000268795.5_1_16:68025739-68025916:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.522302966	3	335.522303	1003.54508	2.4758	0.00083068	-2.9904	-0.0010033	-0.51458	-0.00017265	335.5205673839212	16.658	0.095922	16.645	16.621	16.717	-0.013294	1452	34	0.74322224	0.020409405	0.7417028	452.65894	0	12.430328						67	5	2	NaN	NaN	NaN	0.8439	1	8564	8564		1.9246	0	1	4699.5	+		26474	10459	15236	15670	21117	21117					0.04344876163088429
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	ENST00000593637.5_1_19:14640508-14674910:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.80549964995	2	524.8055	1047.59645	1.9418	0.0010191	-2.575	-0.0013514	-0.63317	-0.00033229	524.8043189970673	26.167	0.14477	26.167	26.119	26.263	0	1275	52	0.85233563	0.031340897	0.85233563	345.88406	0	12.718353						240	7	4	NaN	NaN	NaN	0.0080618	1	10546	10546		96.341	35.358	1	54262			26475	1164	15237	15671	21118	21118					0.07455200137110296
TIAGPNKG	8	Unmodified	_TIAGPNKG_					0	0	0		ENSG00000162669|ENST00000370425|HFM1;nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF	ENSG00000162669|ENST00000370425|HFM1	ENSG00000162669|ENST00000370425|HFM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.4202791593001	1	757.420279	756.413003	2.2715	0.0017205	3.9606	0.0029999	6.2321	0.0047203	757.4234985904685	29.376	0.048264	29.368	29.344	29.393	-0.0077229	570	37	1.2801172	0.021570086	1.2785977	261.03958	0	4.3985596						42	3	2	NaN	NaN	NaN	0.84692	1	4098	4098		1.4396	0	1	2579.6			26476	4160	15238	15672	21119	21119					0.025052711461398758
TIANTVTALY	10	Unmodified	_TIANTVTALY_					0	0	0			REV__ENSG00000113073|ENST00000506757|SLC4A9	REV__ENSG00000113073|ENST00000506757|SLC4A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5779020133	1	1066.5779	1065.57063	0.20009	0.00021341	4.6209	0.0049285	4.8209	0.0051419	1066.5828246388915	44.038	0.19166	44.05	43.978	44.17	0.011429	78	73	1.5723488	0.0423944	1.5708294	318.96936	0	8.600189						210	9	2	NaN	NaN	NaN	0.13684	1	11111	11111		40.957	14.225	1	16840	+		26477	9138	15239	15673	21120	21120					0.04046305894848956
TIANTVTALY	10	Unmodified						0	0	0			REV__ENSG00000113073|ENST00000506757|SLC4A9	REV__ENSG00000113073|ENST00000506757|SLC4A9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1066.5779	1065.57063	0.20009	0.00021341	4.6209	0.0049285	4.8209	0.0051419	1066.5828246388915	44.038	0.19166	44.05	43.978	44.17	0.011429	78	73	1.5723488	0.0423944	1.5708294	318.96936		8.600189	-0.0073006	0.00087866	0.00012354	NaN	40.957	210	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16840	+		26478	9138	15239	15673							0.04046305894848956
TIAPGLFG	8	Unmodified	_TIAPGLFG_					0	0	0		ENSG00000072506|ENST00000168216|HSD17B10	ENSG00000072506|ENST00000168216|HSD17B10	ENSG00000072506|ENST00000168216|HSD17B10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.4348665910001	1	775.434867	774.42759	1.9009	0.0014741	-1.4967	-0.0011606	0.40428	0.0003135	775.4340372067095	30.173	0.12067	30.173	30.149	30.27	0	552	58	1.2908988	0.0341326	1.2908988	263.1291	0	6.9573975						176	6	3	NaN	NaN	NaN	0.76633	1	4425	4425		13.737	3.6855	1	22300			26479	796	15240	15674	21121	21121					0.031353432942864856
TIAPGLFG	8	Unmodified	_TIAPGLFG_					0	0	0		ENSG00000072506|ENST00000168216|HSD17B10	ENSG00000072506|ENST00000168216|HSD17B10	ENSG00000072506|ENST00000168216|HSD17B10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	775.4348665910001	1	775.434867	774.42759	1.2159	0.00094288	-0.4012	-0.00031111	0.81473	0.00063177	775.434606130228	30.172	0.16893	30.166	30.118	30.287	-0.0064106	552	52	1.2908988	0.030539632	1.2893794	263.1291	0	6.225006						202	8	3	NaN	NaN	NaN	0.76633	1	4345	4345		13.737	3.6855	1	24511			26480	796	15240	15674	21122	21122					0.031353432942864856
TIATPVLA	8	Unmodified	_TIATPVLA_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.4767314057001	1	785.476731	784.469455	1.8636	0.0014638	0.23255	0.00018267	2.0961	0.0016464	785.4770838216003	55.629	0.04805	55.629	55.58	55.629	0	372	73	1.3983358	0.04285586	1.3983358	284.9649	0	8.733551						112	3	3	NaN	NaN	NaN	0.82797	1	4563	4563		5.4659	0	1	10081	+		26481	10541	15241	15675	21123	21123					0.0685989898280468
TIATPVLA	8	Unmodified						0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	785.476731	784.469455	1.8636	0.0014638	0.23255	0.00018267	2.0961	0.0016464	785.4770838216003	55.629	0.04805	55.629	55.58	55.629	0	372	73	1.3983358	0.04285586	1.3983358	284.9649		8.733551	0.0013741	-0.00031124	-0.001025	NaN	5.4659	112	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10081	+		26482	10541	15241	15675							0.0685989898280468
TIAVINALF	9	Unmodified	_TIAVINALF_					0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.5716944234	1	961.571694	960.564418	1.109	0.0010664	-1.5392	-0.0014801	-0.43016	-0.00041363	961.5727088297721	33.864	0.07235	33.863	33.839	33.911	-0.0018463	252	49	1.4695803	0.028431177	1.4680609	298.53787	0	5.7756653						93	4	2	NaN	NaN	NaN	0.042816	1	7207	7207		49.961	2.8255	1	7233.9			26483	3890	15242	15676	21124	21124					0.08255832453983203
TIAVINALF	9	Unmodified						0	0	0		ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	ENST00000487336.1_1_7:37172686-37264491:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	961.571694	960.564418	0.69446	0.00066777	-3.1253	-0.0030052	-2.4308	-0.0023374	961.5697537706233	33.866	0.072376	33.866	33.842	33.914	0	252	49	1.4695803	0.028437257	1.4695803	298.5379		5.776886	0.0015304	-0.00077502	0.00075972	NaN	49.961	75	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6598.1			26484	3890	15242	15676							0.08255832453983203
TICAVGKG	8	Unmodified	_TICAVGKG_					0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.7047313603501	2	374.704731	747.39491	1.604	0.00060102	5.9109	0.0022149	7.5149	0.0028159	374.70710578382125	27.591	0.31373	27.591	27.495	27.808	0	1440	46	0.7506418	0.027818918	0.7506418	306.19785	0	11.347748						354	14	4	NaN	NaN	NaN	0.82332	1	4005	4005		6.0903	0	1	84778	+		26485	11170	15243	15677	21125	21125					0.011108128997989297
TICAVGKG	8	Unmodified	_TICAVGKG_					0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.7047313603501	2	374.704731	747.39491	1.9917	0.00074631	6.4037	0.0023995	8.3954	0.0031458	374.70649347993754	29.473	0.072397	29.466	29.417	29.49	-0.0070667	1446	31	0.7469324	0.018546999	0.74541295	304.68472	0	7.5655518						45	4	2	NaN	NaN	NaN	0.8439	1	3927	3927		3.1533	0	1	3191.3	+		26486	11170	15243	15677	21126	21126					0.011108128997989297
TIDELDELF	9	Unmodified	_TIDELDELF_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5251977407997	1	1094.5252	1093.51792	1.1855	0.0012976	-6.4842	-0.0070971	-5.2987	-0.0057995	1094.5205369068003	31.187	0.048283	31.187	31.187	31.235	0	96	91	1.5617468	0.05303788	1.5617468	316.71515	0	10.755829						116	3	2	NaN	NaN	NaN	0.39244	1	12536	12536		14.042	0	1	13042			26487	5155	15244	15678	21127	21127					-0.025096969586229534
TIEDPVEAL	9	Unmodified	_TIEDPVEAL_					0	0	0		RGS7|p.H80N|1|0.11|ENSG00000182901|chr1:240936695-240936695|G/T|missense_variant;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENSG00000182901|ENST00000440928|RGS7	RGS7|p.H80N|1|0.11|ENSG00000182901|chr1:240936695-240936695|G/T|missense_variant	RGS7|p.H80N|1|0.11|ENSG00000182901|chr1:240936695-240936695|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5040683681999	1	986.504068	985.496792	1.683	0.0016603	-1.3276	-0.0013096	0.35546	0.00035066	986.5030729421657	24.164	0.19302	24.151	24.079	24.272	-0.012749	276	70	1.4553556	0.04092419	1.4538362	295.54242	0	8.310547						245	9	3	NaN	NaN	NaN	0.056143	1	7888	7888		44.302	2.5178	1	26622			26488	5286	15245	15679	21128	21128					0.003463377325147121
TIEYDPNRS	9	Unmodified	_TIEYDPNRS_					0	0	0		tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	365.50861064809993	3	365.508611	1093.504	1.2602	0.00046061	-4.0702	-0.0014877	-2.81	-0.0010271	365.50718829448476	34.106	0.096569	34.105	34.08	34.177	-0.0012474	1482	31	0.72465914	0.018573165	0.7231397	440.86264	0	11.299377						85	5	2	NaN	NaN	NaN	0.35794	1	12213	12213		18.233	4.7704	1	17413			26489	13948	15246	15680	21129	21129					-0.03900929667065611
TIEYDPNRS	9	Unmodified						0	0	0		tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	tr|U7T1V7|U7T1V7_FUSNULargeribosomalsubunitproteinuL2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplBPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	365.508611	1093.504	1.0646	0.00038911	-4.1152	-0.0015041	-3.0506	-0.001115	365.50682143614574	34.107	0.12067	34.107	34.059	34.179	0	1485	34	0.72280174	0.020431578	0.72280174	439.73264		12.429993	0.001237	-2.2697E-05	-0.00016899	NaN	18.233	134	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16112			26490	13948	15246	15680							-0.03900929667065611
TIFILDELP	9	Unmodified	_TIFILDELP_					0	0	0		ENSG00000204479|ENST00000376098|PRAMEF17	ENSG00000204479|ENST00000376098|PRAMEF17	ENSG00000204479|ENST00000376098|PRAMEF17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.592489445	1	1060.59249	1059.58521	0.85483	0.00090663	-1.0737	-0.0011388	-0.21888	-0.00023214	1060.5917795604018	31.862	0.072371	31.857	31.833	31.906	-0.0044155	129	115	1.5422925	0.06724548	1.540773	312.89468	0	13.642517						314	4	4	NaN	NaN	NaN	0.056143	1	10844	10844		44.302	2.8423	1	59222			26491	5887	15247	15681	21130	21130					0.0578037804300493
TIFITELLS	9	Unmodified	_TIFITELLS_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-3|HTR3D	REV__nc|ENSG00000186090|Q70Z44-3|HTR3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.592489445	1	1036.59249	1035.58521	2.188	0.002268	-0.14892	-0.00015437	2.0391	0.0021137	1036.5922384386195	30.004	0.26553	30.004	29.956	30.222	0	87	127	1.5670487	0.074276686	1.5670487	318.01184	0	15.073456						570	12	4	NaN	NaN	NaN	0.043119	1	10027	10027		49.833	2.7927	1	177490	+		26492	10986	15248	15682	21131	21131					0.06884378042991557
TIFLAVEFF	9	Unmodified	_TIFLAVEFF_					0	0	0		CON__Q2KIF2	CON__Q2KIF2	CON__Q2KIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.7971433016	2	543.797143	1085.57973	0.89712	0.00048785	8.0697	0.0043883	8.9668	0.0048761	543.8020243232257	31.79	0.096546	31.79	31.742	31.839	0	1245	40	0.87076044	0.023940682	0.87076044	353.2005	0	9.710876						94	5	2	NaN	NaN	NaN	0.47587	1	12211	12211		10.605	1.4818	1	11836		+	26493	212	15249	15683	21132	21132					0.04036699251173559
TIGPGEPA	8	Unmodified	_TIGPGEPA_					0	0	0		nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-6|HNF1A	nc|ENSG00000135100|P20823-6|HNF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3777456426001	1	741.377746	740.370469	0.93437	0.00069272	5.2575	0.0038978	6.1919	0.0045905	741.3812445937439	33.021	0.14484	33.021	32.973	33.118	0	591	76	1.26753	0.0449785	1.26753	258.57254	0	9.175476						190	7	3	NaN	NaN	NaN	0.82332	1	3914	3914		6.0903	0	1	19990			26494	2918	15250	15684	21133	21133					-0.010101239820869523
TIGPGEPA	8	Unmodified	_TIGPGEPA_					0	0	0		nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A;nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-6|HNF1A	nc|ENSG00000135100|P20823-6|HNF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3777456426001	1	741.377746	740.370469	1.1662	0.0008646	4.889	0.0036246	6.0552	0.0044892	741.3820131119379	33.02	0.19286	33.018	32.969	33.162	-0.0024796	591	67	1.26753	0.039578915	1.2660105	258.57254	0	8.07399						191	9	3	NaN	NaN	NaN	0.79379	1	3840	3840		10.052	0	1	20166			26495	2918	15250	15684	21134	21134					-0.010101239820869523
TIGTGGFA	8	Unmodified	_TIGTGGFA_					0	0	0		nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-2|MELK	nc|ENSG00000165304|Q14680-2|MELK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.3671809563	1	723.367181	722.359904	1.1329	0.00081954	5.7815	0.0041822	6.9145	0.0050017	723.3714172917648	30.993	0.36205	30.988	30.795	31.157	-0.0050716	642	124	1.2369217	0.073859334	1.2354022	252.44289	0	15.073944						507	16	2	NaN	NaN	NaN	0.79379	1	3560	3560		10.052	0.92837	1	49934			26496	4395	15251	15685	21135	21135					-0.012381066365264815
TIGVDFEM	8	Unmodified	_TIGVDFEM_					0	0	0		nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF	nc|ENSG00000109113|Q9BZG1-4|RAB34	nc|ENSG00000109113|Q9BZG1-4|RAB34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.4178958978001	1	911.417896	910.410619	1.9893	0.0018131	1.21	0.0011028	3.1993	0.0029159	911.4188834653595	28.219	0.14477	28.219	28.194	28.339	0	378	61	1.3947657	0.035713315	1.3947657	283.56024	0	7.26062						189	7	3	NaN	NaN	NaN	0.063835	1	6230	6230		74.332	27.292	1	17733			26497	1713	15252	15686	21136	21136					-0.0481694537382964
TIGVDFEM	8	Oxidation (M)	_TIGVDFEM(Oxidation (M))_		TIGVDFEM(1)		TIGVDFEM(100)	0	0	1		nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF	nc|ENSG00000109113|Q9BZG1-4|RAB34	nc|ENSG00000109113|Q9BZG1-4|RAB34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	927.4128105199002	1	927.412811	926.405534	2.0595	0.00191	2.0027	0.0018573	4.0622	0.0037673	927.4141134376544	23.61	0.14459	23.61	23.586	23.73	0	372	55	1.3983358	0.032124758	1.3983358	284.21298	0	6.5293884						185	7	3	NaN	NaN	NaN	0.036402	1	6514	6514		103.03	47.079	1	18068			26498	1713	15252	15687	21137	21137		194			-0.06061249236438471
TIGVDFEM	8	Oxidation (M)	_TIGVDFEM(Oxidation (M))_		TIGVDFEM(1)		TIGVDFEM(85)	0	0	1		nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000481501.1_1_17:27042816-27043099:-|nuORF	nc|ENSG00000109113|Q9BZG1-4|RAB34	nc|ENSG00000109113|Q9BZG1-4|RAB34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.4128105199002	1	927.412811	926.405534	1.3545	0.0012562	1.3535	0.0012553	2.708	0.0025114	927.4142850978623	23.634	0.12053	23.621	23.572	23.693	-0.013048	369	55	1.4001206	0.032124758	1.3986012	284.57574	0	6.5293884						168	6	3	NaN	NaN	NaN	0.035464	1	6386	6386		84.879	22.902	1	16762			26499	1713	15252	15687	21138	21138		194			-0.06061249236438471
TIICAPTGCGK	11	Unmodified	_TIICAPTGCGK_					0	0	0		ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI	ENSG00000107201|ENST00000379883|RIGI	ENSG00000107201|ENST00000379883|RIGI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2673697944001	2	532.26737	1062.52019	1.3626	0.00072527	6.8628	0.0036529	8.2254	0.0043781	532.2705636938834	30.68	0.048254	30.68	30.656	30.704	0	1233	61	0.87812483	0.036825776	0.87812483	356.28452	0	14.941437						57	3	2	NaN	NaN	NaN	0.74155	1	11227	11227		4.7291	1.5757	1	5645.9			26500	1627	15253	15688	21139	21139					-0.00857263026136934
TIICQPMQ	8	Unmodified	_TIICQPMQ_					0	0	0		ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.23025600660003	2	467.230256	932.445959	1.1637	0.0005437	3.8096	0.00178	4.9733	0.0023237	467.2324365182717	27.157	0.28957	27.157	27.06	27.35	0	1314	67	0.8283535	0.040626824	0.8283535	336.6899	0	16.513062						498	13	4	NaN	NaN	NaN	0.76633	1	6657	6657		13.737	0.73422	1	142000			26501	3828	15254	15689	21140	21140					-0.02296606117670308
TIIDIITHR	9	Unmodified	_TIIDIITHR_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	361.2169909594666	3	361.216991	1080.62914	2.0349	0.00073502	-5.5894	-0.002019	-3.5546	-0.001284	361.21479550148194	23.61	0.024067	23.61	23.586	23.61	0	1470	34	0.7320868	0.020420492	0.7320868	445.44733	0	12.425079						32	2	2	NaN	NaN	NaN	0.2345	1	12029	12029		16.226	7.981	1	2586.6			26502	5672	15255	15690	21141	21141					0.09205407259969434
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.2290080112333	3	358.229008	1071.66519	1.7099	0.00061255	-2.7986	-0.0010025	-1.0887	-0.00038999	358.2276876678401	23.73	0.096397	23.73	23.706	23.803	0	1467	37	0.7339432	0.022275686	0.7339432	446.6238	0	13.555328						104	5	3	NaN	NaN	NaN	0.14227	1	11642	11642		29.706	20.787	1	12199			26503	2914	15256	15691	21142	21142					0.13222864436852433
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.83987378355	2	536.839874	1071.66519	1.9595	0.0010519	-0.49003	-0.00026307	1.4695	0.00078888	536.8394548283529	23.73	0.12045	23.73	23.706	23.827	0	1209	46	0.892844	0.02758503	0.892844	362.21707	0	11.1909485						193	6	4	NaN	NaN	NaN	0.029876	1	11643	11643		75.089	34.935	1	37231			26504	2914	15256	15691	21143	21143					0.13222864436852433
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.2290080112333	3	358.229008	1071.66519	1.9984	0.00071589	-2.0803	-0.00074523	-0.081908	-2.9342E-05	358.2279658495576	23.802	0.09639	23.789	23.741	23.837	-0.013048	1464	37	0.73579943	0.022275686	0.73428	447.75336	0	13.555328						97	5	3	NaN	NaN	NaN	0.12104	1	11340	11340		32.778	17.924	1	12448			26505	2914	15256	15691	21144	21144					0.13222864436852433
TIIDILTKR	9	Unmodified	_TIIDILTKR_					0	0	0		ENST00000468639.5_1_9:75766818-75774345:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENST00000468639.5_1_9:75766818-75774345:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.83987378355	2	536.839874	1071.66519	1.3904	0.00074642	-0.13533	-7.2653E-05	1.2551	0.00067377	536.8399036155736	23.802	0.14464	23.789	23.741	23.886	-0.013048	1209	49	0.892844	0.029422462	0.8913246	362.21707	0	11.93634						202	7	4	NaN	NaN	NaN	0.029876	1	11341	11341		75.089	41.664	1	36667			26506	2914	15256	15691	21145	21145					0.13222864436852433
TIIPQDPVL	9	Unmodified	_TIIPQDPVL_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.5771737318001	1	995.577174	994.569897	2.1293	0.0021199	0.60037	0.00059772	2.7297	0.0027176	995.578318653521	28.05	0.096514	28.05	28.001	28.098	0	234	79	1.4802408	0.04616642	1.4802408	300.5581	0	9.373932						206	5	3	NaN	NaN	NaN	0.019939	1	8377	8377		72.076	19.296	1	30292			26507	1422	15257	15692	21146	21146					0.07239511245813901
TIIPQDPVL	9	Unmodified	_TIIPQDPVL_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.5771737318001	1	995.577174	994.569897	1.3086	0.0013028	0.61814	0.00061541	1.9268	0.0019182	995.5774736708794	28.049	0.09651	28.04	28.016	28.112	-0.0089779	228	82	1.4837929	0.04793954	1.4822735	301.27933	0	9.733948						215	5	3	NaN	NaN	NaN	0.077759	1	8213	8213		39.039	7.4781	1	30096			26508	1422	15257	15692	21147	21147					0.07239511245813901
TIKVAGTG	8	Unmodified	_TIKVAGTG_					0	0	0			REV__ENST00000461328.1_1_6:31750434-31752201:-|nuORF	REV__ENST00000461328.1_1_6:31750434-31752201:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	373.72397835850006	2	373.723978	745.433404	2.2009	0.00082251	-1.9239	-0.00071902	0.27691	0.00010349	373.7229037645935	53.948	0.048016	53.948	53.948	53.996	0	1467	25	0.7339432	0.014848888	0.7339432	299.40045	0	6.0573425						25	3	2	NaN	NaN	NaN	0.84887	1	3984	3984		0.32989	0	1	1424.2	+		26509	11238	15258	15693	21148	21148					0.05050441805963146
TILCGAGY	8	Unmodified	_TILCGAGY_					0	0	0			REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19673915275	2	399.196739	796.378925	0.87801	0.0003505	-4.3511	-0.001737	-3.4731	-0.0013865	399.1952764376764	33.045	0.28962	33.045	32.78	33.069	0	1404	46	0.77288127	0.027779698	0.77288127	314.92102	0	11.319244						307	13	4	NaN	NaN	NaN	0.84651	1	4702	4702		1.6704	0.2308	1	79767	+		26510	8594	15259	15694	21149	21149					-0.02740893337113448
TILCGAGY	8	Unmodified	_TILCGAGY_					0	0	0			REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19673915275	2	399.196739	796.378925	0.68362	0.0002729	-4.0344	-0.0016105	-3.3508	-0.0013376	399.19543990874195	33.118	0.12066	33.118	33.094	33.214	0	1404	46	0.77288127	0.027782738	0.77288127	314.92102	0	11.320435						183	6	4	NaN	NaN	NaN	0.84651	1	4705	4705		1.6704	0.2308	1	50149	+		26511	8594	15259	15694	21150	21150					-0.02740893337113448
TILCGAGY	8	Unmodified						0	0	0			REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.196739	796.378925	0.68362	0.0002729	-4.0344	-0.0016105	-3.3508	-0.0013376	399.19543990874195	33.118	0.12066	33.118	33.094	33.214	0	1404	46	0.77288127	0.027782738	0.77288127	314.92102		11.320435	0.1831	0.00024398	-0.00016627	NaN	1.6704	183	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50149	+		26512	8594	15259	15694							-0.02740893337113448
TILCGAGY	8	Unmodified						0	0	0			REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	REV__SDHA|p.G310E|1|0.38|ENSG00000073578|chr5:233510-233510|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	399.196739	796.378925	0.9693	0.00038694	-5.3239	-0.0021253	-4.3546	-0.0017383	399.1948831204954	32.755	0.048279	32.752	32.727	32.776	-0.0031013	1401	40	0.77473325	0.024075806	0.7732138	315.67563		9.810028	-0.1831	-0.00078553	0.00016627	NaN	1.6704	82	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11488	+		26513	8594	15259	15694							-0.02740893337113448
TIMSTWSLSR	10	Unmodified	_TIMSTWSLSR_					0	0	0			REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.302798173	2	591.302798	1180.59104	2.3405	0.0013839	-10.898	-0.0064442	-8.5578	-0.0050602	591.2976187381274	25.563	0.072386	25.552	25.528	25.6	-0.011602	1116	31	0.94976085	0.018327594	0.9482414	384.85617	0	7.426605						47	4	2	NaN	NaN	NaN	0.77967	1	15261	15261		0.59723	0.1514	1	3217.1	+		26514	12991	15260	15695	21151	21151					0.007971532830197248
TIMSTWSLSR	10	Unmodified						0	0	0			REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.302798	1180.59104	1.9684	0.0011639	-9.1301	-0.0053987	-7.1617	-0.0042348	591.2977022927433	25.539	0.072304	25.539	25.515	25.588	0	1110	28	0.95342636	0.016492188	0.95342636	386.3415		6.6828613	-0.0061218	0.00081124	0.0025925	NaN	0.59723	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3666.1	+		26515	12991	15260	15695							0.007971532830197248
TIMSTWSLSR	10	Unmodified						0	0	0			REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.302798	1180.59104	2.3405	0.0013839	-10.898	-0.0064442	-8.5578	-0.0050602	591.2976187381274	25.563	0.072386	25.552	25.528	25.6	-0.011602	1116	31	0.94976085	0.018327594	0.9482414	384.85617		7.426605	0.0061218	-0.0012798	-0.0025925	NaN	0.59723	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3217.1	+		26516	12991	15260	15695							0.007971532830197248
TIPDLDWEL	9	Unmodified	_TIPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.5462675338997	1	1101.54627	1100.53899	1.5686	0.0017279	0.32779	0.00036108	1.8964	0.002089	1101.5465358574284	32.997	0.5551	32.997	32.852	33.407	0	132	139	1.5405227	0.08134198	1.5405227	312.3861	0	16.494507						2126	24	4	NaN	NaN	NaN	0.019103	1	12866	12866		73.133	36.546	1	411960			26517	847	15261	15696	21152	21152					-0.007256868591184684
TIPDLDWEL	9	Unmodified	_TIPDLDWEL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.5462675338997	1	1101.54627	1100.53899	1.8519	0.0020399	-0.59275	-0.00065294	1.2591	0.001387	1101.5451687154027	33.02	0.55478	33.018	32.825	33.379	-0.0024796	129	127	1.5422925	0.07425308	1.540773	312.74496	0	15.057007						2020	24	4	NaN	NaN	NaN	0.013281	1	12531	12531		82.96	43.501	1	379110			26518	847	15261	15696	21153	21153					-0.007256868591184684
TIPHDIYVF	9	Unmodified	_TIPHDIYVF_					0	0	0		nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.5724227048997	1	1104.57242	1103.56515	1.6682	0.0018426	-6.6242	-0.0073169	-4.956	-0.0054743	1104.5673603218552	34.396	0.1688	34.396	34.348	34.517	0	63	67	1.5811787	0.038849115	1.5811787	320.61942	0	7.8775635						306	8	4	NaN	NaN	NaN	0.20577	1	12992	12992		24.961	0	1	38071			26519	4404	15262	15697	21154	21154					0.017506271030242715
TIPKLYLG	8	Unmodified	_TIPKLYLG_					0	0	0			REV__nc|ENSG00000292343|Q02040-2|AKAP17A	REV__nc|ENSG00000292343|Q02040-2|AKAP17A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.5502306998001	1	904.550231	903.542954	2.4094	0.0021795	-5.7383	-0.0051906	-3.3289	-0.0030111	904.5454054947261	53.948	0.024002	53.948	53.948	53.972	0	336	28	1.419741	0.016044497	1.419741	288.67053	0	3.262268						26	2	2	NaN	NaN	NaN	0.84692	1	6154	6154		1.4396	0	1	1543.9	+		26520	11166	15263	15698	21155	21155					0.08732447425279588
TIPSALGLM	9	Unmodified	_TIPSALGLM_					0	0	0		ENST00000599564.5_2_19:35517288-35517357:+|nuORF	ENST00000599564.5_2_19:35517288-35517357:+|nuORF	ENST00000599564.5_2_19:35517288-35517357:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5015659477001	1	902.501566	901.494289	2.0709	0.001869	-1.0841	-0.00097841	0.98675	0.00089054	902.5005235244599	30.101	0.072407	30.101	30.077	30.149	0	315	43	1.4322147	0.024938107	1.4322147	291.21667	0	5.0707397						68	4	2	NaN	NaN	NaN	0.36492	1	6110	6110		15.175	0	1	5968.5			26521	7766	15264	15699	21156	21156					0.0396021079387765
TIPSALGLM	9	Unmodified						0	0	0		ENST00000599564.5_2_19:35517288-35517357:+|nuORF	ENST00000599564.5_2_19:35517288-35517357:+|nuORF	ENST00000599564.5_2_19:35517288-35517357:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	902.501566	901.494289	1.5639	0.0014115	-0.26231	-0.00023674	1.3016	0.0011747	902.5001541236186	30.1	0.072374	30.094	30.07	30.142	-0.0064106	315	55	1.4322147	0.032066822	1.4306953	291.21667		6.520233	-0.0036934	0.00043864	-0.00075972	NaN	15.175	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7763.2			26522	7766	15264	15699							0.0396021079387765
TIREVAVL	8	Unmodified	_TIREVAVL_					0	0	0		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5512933323001	1	900.551293	899.544017	2.2477	0.0020242	-12.085	-0.010884	-9.8378	-0.0088594	900.5393049271003	36.155	0.072254	36.157	36.108	36.181	0.0011024	330	34	1.4233059	0.019605756	1.4217864	289.41467	0	3.9866028						62	4	2	NaN	NaN	NaN	0.75561	1	5959	5959		15.175	0	1	3527.2			26523	1566	15265	15700	21157	21157					0.09022661794188025
TITGVDVSM	9	Unmodified	_TITGVDVSM_					0	0	0		ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.4550096856001	1	922.45501	921.447733	1.7934	0.0016543	1.9547	0.0018032	3.7482	0.0034575	922.4571686399744	23.754	0.14453	23.754	23.73	23.875	0	357	64	1.407258	0.03745711	1.407258	286.04895	0	7.6137695						153	7	3	NaN	NaN	NaN	0.030669	1	6434	6434		58.235	23.797	1	14636			26524	4524	15266	15701	21158	21158					-0.01613273828070305
TITGVDVSM	9	Unmodified	_TITGVDVSM_					0	0	0		ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4550096856001	1	922.45501	921.447733	1.4597	0.0013465	1.2742	0.0011754	2.734	0.002522	922.4566023660657	23.778	0.12051	23.765	23.741	23.861	-0.013048	357	58	1.407258	0.03388965	1.4057386	286.04895	0	6.8886414						174	6	3	NaN	NaN	NaN	0.074859	1	6312	6312		39.459	11.67	1	14928			26525	4524	15266	15701	21159	21159					-0.01613273828070305
TITGVDVSM	9	Oxidation (M)	_TITGVDVSM(Oxidation (M))_		TITGVDVSM(1)		TITGVDVSM(83)	0	0	1		ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.4499243077001	1	938.449924	937.442648	1.4874	0.0013959	-0.38921	-0.00036526	1.0982	0.0010306	938.4500384833204	19.252	0.12004	19.252	19.228	19.348	0	378	46	1.3947657	0.026777864	1.3947657	283.43845	0	5.441681						102	6	2	NaN	NaN	NaN	0.013281	1	6764	6764		82.96	43.501	1	11196			26526	4524	15266	15702	21160	21160		478			-0.02857577690679136
TITGVDVSM	9	Oxidation (M)	_TITGVDVSM(Oxidation (M))_		TITGVDVSM(1)		TITGVDVSM(110)	0	0	1		ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	ENSG00000167088|ENST00000300413|SNRPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.4499243077001	1	938.449924	937.442648	2.0682	0.0019409	0.28181	0.00026446	2.35	0.0022054	938.4502089889322	19.274	0.072128	19.26	19.236	19.308	-0.014143	378	46	1.3947657	0.026777864	1.3932463	283.43845	0	5.441681						103	4	2	NaN	NaN	NaN	0.0034808	1	6623	6623		106.56	45.287	1	11241			26527	4524	15266	15702	21161	21161		478			-0.02857577690679136
TITGWSEPF	9	Unmodified	_TITGWSEPF_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.25055724975	2	519.250557	1036.48656	1.789	0.00092896	0.97667	0.00050714	2.7657	0.0014361	519.2508307215086	21.705	0.096361	21.705	21.681	21.778	0	1314	61	0.8283535	0.0369215	0.8283535	336.19867	0	14.985077						142	5	3	NaN	NaN	NaN	0.27442	1	10056	10056		20.555	0.10679	1	31161			26528	1589	15267	15703	21162	21162					-0.03022225202039408
TIVEEVETL	9	Unmodified	_TIVEEVETL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5459331829	1	1032.54593	1031.53866	1.4515	0.0014988	-7.9211	-0.0081789	-6.4696	-0.0066801	1032.5377942642854	27.35	0.048267	27.35	27.302	27.35	0	186	67	1.5086359	0.03901422	1.5086359	306.17355	0	7.917816						94	3	2	NaN	NaN	NaN	0.25448	1	9851	9851		21.835	6.6596	1	10225			26529	7990	15268	15704	21163	21163					0.024148934210643347
TIVEEVETL	9	Unmodified						0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.54593	1031.53866	1.4113	0.0014572	-11.935	-0.012323	-10.523	-0.010866	1032.5341267584402	27.349	0.048254	27.339	27.339	27.387	-0.010126	177	73	1.5139546	0.042556405	1.5124352	307.25296		8.636719	-0.005428	-0.0013982	0.0018996	NaN	21.835	67	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5609.7			26530	7990	15268	15704							0.024148934210643347
TIVETRSVD	9	Unmodified	_TIVETRSVD_					0	0	0			REV__MUC16|p.E5813D|1|0.21|ENSG00000181143|chr19:8959331-8959331|C/G|missense_variant	REV__MUC16|p.E5813D|1|0.21|ENSG00000181143|chr19:8959331-8959331|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5367654801001	1	1019.53677	1018.52949	2.3143	0.0023595	-0.57549	-0.00058673	1.7388	0.0017728	1020.5366577011628	29.208	0.048271	29.208	29.184	29.232	0	225	49	1.4855686	0.028422117	1.4855686	301.54288	0	5.769165						53	3	2	NaN	NaN	NaN	0.49672	1	9321	9321		9.746	2.8828	1	6101.7	+		26531	13074	15269	15705	21164	21164					0.020965448553852184
TIVNILTNR	9	Unmodified	_TIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.3140231738	2	522.314023	1042.61349	1.6939	0.00088473	2.3284	0.0012162	4.0223	0.0021009	522.3154204691983	22.597	0.21715	22.597	22.549	22.766	0	1233	58	0.87812483	0.034963727	0.87812483	356.37158	0	14.189423						222	10	4	NaN	NaN	NaN	0.050761	1	10338	10338		46.588	9.3569	1	42058			26532	5275	15270	15706	21165	21165					0.0938912074293512
TIVNILTNR	9	Unmodified	_TIVNILTNR_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.3140231738	2	522.314023	1042.61349	1.3611	0.00071095	2.4161	0.0012619	3.7772	0.0019729	522.3154514685926	22.597	0.16884	22.583	22.559	22.728	-0.01354	1239	67	0.87444305	0.040486515	0.8729236	354.87738	0	16.430725						260	8	4	NaN	NaN	NaN	0.0014219	1	10135	10135		112.76	31.062	1	51076			26533	5275	15270	15706	21166	21166					0.0938912074293512
TIVPACENAQ	10	Unmodified	_TIVPACENAQ_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.2527739752	2	523.252774	1044.491	0.98978	0.00051791	-1.2111	-0.0006337	-0.2213	-0.0001158	523.2532564665119	12.532	0.168	12.532	12.46	12.628	0	1308	37	0.83204526	0.022148132	0.83204526	337.66312	0	8.98822						90	8	2	NaN	NaN	NaN	0.5917	1	10390	10390		15.463	0.28729	1	6038.7	+		26534	8679	15271	15707	21167	21167					-0.029470840508110996
TIVPDGGV	8	Unmodified	_TIVPDGGV_					0	0	0		nc|ENSG00000151360|Q8N6M5-2|ALLC;ENSG00000151360|ENST00000252505|ALLC	nc|ENSG00000151360|Q8N6M5-2|ALLC	nc|ENSG00000151360|Q8N6M5-2|ALLC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.4090457710001	1	757.409046	756.401769	1.6317	0.0012359	4.7999	0.0036355	6.4316	0.0048713	757.4128375192814	30.703	0.33784	30.698	30.625	30.963	-0.0057564	543	136	1.296287	0.0808835	1.2947675	264.33698	0	16.493652						681	15	4	NaN	NaN	NaN	0.76633	1	4096	4096		13.737	0	1	205270			26535	3734	15272	15708	21168	21168					0.013824490520050858
TKAAFVQG	8	Unmodified	_TKAAFVQG_					0	0	0		ENST00000400423.6_1_21:43540943-43557727:+|nuORF;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4515792877002	1	821.451579	820.444303	2.0641	0.0016956	-1.6749	-0.0013759	0.38918	0.00031969	821.4498886584196	56.804	0.21614	56.804	56.756	56.972	0	339	76	1.4179583	0.044587016	1.4179583	288.74576	0	9.079437						285	10	3	NaN	NaN	NaN	0.84606	1	5027	5027		1.9246	0.25428	1	30442			26536	5076	15273	15709	21169	21169					0.026898441802472917
TKAAFVQG	8	Unmodified						0	0	0		ENST00000400423.6_1_21:43540943-43557727:+|nuORF;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	ENST00000400423.6_1_21:43540943-43557727:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	821.451579	820.444303	-0.32682	-0.00026847	1.7569	0.0014432	1.4301	0.0011747	821.4523779691008	56.803	0.19211	56.802	56.754	56.946	-0.00056458	336	88	1.419741	0.05172634	1.4182216	289.10876		10.533295	-0.0011	0.001125	0.00013164	NaN	1.9246	277	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26755			26537	5076	15273	15709							0.026898441802472917
TKAGGVCF	8	Unmodified	_TKAGGVCF_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.3865361899001	1	782.386536	781.37926	1.4011	0.0010962	3.6129	0.0028267	5.0141	0.0039229	782.3902784312924	32.104	0.096535	32.104	32.08	32.177	0	588	52	1.2693287	0.030575633	1.2693287	258.6923	0	6.2313843						80	5	2	NaN	NaN	NaN	0.84512	1	4506	4506		2.4615	0.79115	1	5135.4			26538	2560	15274	15710	21170	21170					-0.020174736172634766
TKAGGVCF	8	Unmodified						0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	782.386536	781.37926	1.409	0.0011024	5.1256	0.0040102	6.5347	0.0051126	782.3903853307692	32.127	0.072403	32.123	32.051	32.123	-0.0037575	585	31	1.2711272	0.017984629	1.2696078	259.0588		3.6653137	0.009633	0.000587	0.00013956	NaN	2.4615	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4625.6			26539	2560	15274	15710							-0.020174736172634766
TKAPVLPV	8	Unmodified	_TKAPVLPV_					0	0	0		nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-4|WNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.5240159493001	1	824.524016	823.516739	0.19199	0.0001583	-8.5999	-0.0070909	-8.408	-0.0069326	824.5165176988303	56.611	0.023937	56.61	56.61	56.634	-0.00056458	342	46	1.4161754	0.02674365	1.4146559	288.365	0	5.4456177						42	2	2	NaN	NaN	NaN	0.84876	1	4954	4954		0.39566	0	1	3982			26540	635	15275	15711	21171	21171					0.0979217825380374
TKDECGIEIL	10	Unmodified	_TKDECGIEIL_					0	0	0			REV__nc|ENSG00000076242|P40692-3|MLH1	REV__nc|ENSG00000076242|P40692-3|MLH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7813642391501	2	560.781364	1119.54818	1.1306	0.00063402	-4.5107	-0.0025295	-3.3801	-0.0018955	560.7790375878471	26.987	0.19312	26.977	26.905	27.098	-0.010126	1200	64	0.89836043	0.03861493	0.896841	364.25714	0	15.657135						272	9	4	NaN	NaN	NaN	0.70677	1	13251	13251		7.5876	0	1	43653	+		26541	8621	15276	15712	21172	21172					-0.006816615650677704
TKDECGIEIL	10	Unmodified						0	0	0			REV__nc|ENSG00000076242|P40692-3|MLH1	REV__nc|ENSG00000076242|P40692-3|MLH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.781364	1119.54818	1.4059	0.00078838	-5.3065	-0.0029758	-3.9007	-0.0021874	560.7785461045654	26.964	0.096506	26.964	26.964	27.06	0	1200	76	0.89836043	0.045984983	0.89836043	364.25714		18.645477	-0.0066031	-0.00037603	0.00075972	NaN	7.5876	228	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37097	+		26542	8621	15276	15712							-0.006816615650677704
TKDECGIEIL	10	Unmodified						0	0	0			REV__nc|ENSG00000076242|P40692-3|MLH1	REV__nc|ENSG00000076242|P40692-3|MLH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.781364	1119.54818	1.1306	0.00063402	-4.5107	-0.0025295	-3.3801	-0.0018955	560.7790375878471	26.987	0.19312	26.977	26.905	27.098	-0.010126	1200	64	0.89836043	0.03861493	0.896841	364.25714		15.657135	0.0066031	0.00051658	-0.00075972	NaN	7.5876	272	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43653	+		26543	8621	15276	15712							-0.006816615650677704
TKDTHVLRSWS	11	Unmodified	_TKDTHVLRSWS_					0	0	0			REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2	REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3491255889	2	665.349126	1328.6837	2.312	0.0015383	-2.9752	-0.0019795	-0.66322	-0.00044127	665.3459734439876	22.862	0.024065	22.848	22.824	22.848	-0.01354	1101	34	0.95892316	0.020150542	0.9574037	388.0682	0	8.154755						48	2	3	NaN	NaN	NaN	0.74794	1	18385	18385		4.3102	0.74037	1	4051.3	+		26544	13152	15277	15713	21173	21173					0.032503743407460206
TKEDEDTL	8	Unmodified	_TKEDEDTL_					0	0	0			REV__ENST00000476866.5_1_13:96515881-96529579:-|nuORF	REV__ENST00000476866.5_1_13:96515881-96529579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4312973556001	1	950.431297	949.424021	2.1081	0.0020036	-0.40315	-0.00038317	1.7049	0.0016204	950.4321046769036	18.82	0.16808	18.82	18.796	18.964	0	363	58	1.4036897	0.033896923	1.4036897	285.19983	0	6.8871155						168	8	2	NaN	NaN	NaN	0.3434	1	7060	7060		39.459	2.8723	1	18365	+		26545	8885	15278	15714	21174	21174					-0.052714160608843486
TKESHSSLP	9	Unmodified	_TKESHSSLP_					0	0	0			REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.25108856599996	2	493.251089	984.487624	1.0928	0.00053904	-10.962	-0.0054071	-9.8693	-0.004868	493.2456331640142	31.839	0.072388	31.839	31.815	31.887	0	1296	67	0.8394264	0.04060924	0.8394264	340.92856	0	16.493225						125	4	2	NaN	NaN	NaN	0.59509	1	8024	8024		5.6942	1.2811	1	10706	+		26546	9432	15279	15715	21175	21175					-0.005240108331463489
TKESHSSLP	9	Unmodified						0	0	0			REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	493.251089	984.487624	1.0928	0.00053904	-10.962	-0.0054071	-9.8693	-0.004868	493.2456331640142	31.839	0.072388	31.839	31.815	31.887	0	1296	67	0.8394264	0.04060924	0.8394264	340.92856		16.493225	0.0027309	-0.00013847	0.00075972	NaN	5.6942	125	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10706	+		26547	9432	15279	15715							-0.005240108331463489
TKESHSSLP	9	Unmodified						0	0	0			REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	REV__HIVEP3|p.P534Lfs*5|1|0.38|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.251089	984.487624	0.19001	9.3721E-05	-10.757	-0.0053059	-10.567	-0.0052122	493.24569668908447	31.838	0.048271	31.833	31.809	31.857	-0.0044155	1296	133	0.8394264	0.08114833	0.83790696	340.92856		32.957977	-0.0027309	6.3775E-05	-0.00075972	NaN	5.6942	152	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14087	+		26548	9432	15279	15715							-0.005240108331463489
TKFFLKEILL	10	Unmodified	_TKFFLKEILL_					0	0	0		CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3891994896002	2	626.389199	1250.76385	1.3901	0.00087077	-3.027	-0.0018961	-1.6369	-0.0010253	626.8885416488417	39.668	0.69826	39.673	39.625	40.324	0.0053368	1206	109	0.894683	0.066257775	0.89316356	362.30283	0	26.831177						1233	30	2	NaN	NaN	NaN	0.76892	1	17038	17038		3.2116	0.32214	1	405000			26549	99	15280	15716	21176	21176					0.14849467681915485
TKFFLKEILL	10	Unmodified	_TKFFLKEILL_					0	0	0		CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	626.3891994896002	2	626.389199	1250.76385	1.3823	0.00086585	-1.8305	-0.0011466	-0.44823	-0.00028077	626.8895692653947	39.066	0.26538	39.071	39.023	39.288	0.0046806	1260	112	0.8615505	0.06809461	0.8600311	348.8858	0	27.574982						655	12	2	NaN	NaN	NaN	0.77928	1	17039	17039		0.69115	0	1	247800			26550	99	15280	15716	21177	21177					0.14849467681915485
TKFLSPAEL	9	Unmodified	_TKFLSPAEL_					0	0	0			REV__nc|ENSG00000174776|Q8IV35-2|CFAP337	REV__nc|ENSG00000174776|Q8IV35-2|CFAP337	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.28440006709997	2	503.2844	1004.55425	1.5982	0.00080435	-7.969	-0.0040107	-6.3708	-0.0032063	503.28047389122787	21.561	0.14465	21.561	21.488	21.633	0	1305	46	0.83389086	0.027677655	0.83389086	338.5871	0	11.238037						111	7	2	NaN	NaN	NaN	0.64666	1	8775	8775		3.5698	0	1	9957.9	+		26551	10706	15281	15717	21178	21178					0.0521522472874949
TKGAGKAK	8	Unmodified	_TKGAGKAK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4675637029	1	760.467564	759.460287	1.6914	0.0012863	-6.0742	-0.0046192	-4.3828	-0.003333	760.4627551384044	58.437	0.096001	58.437	58.389	58.485	0	540	61	1.2980826	0.035919428	1.2980826	264.6842	0	7.3240967						141	5	3	NaN	NaN	NaN	0.84945	1	4213	4213		0	0	1	14637			26552	2575	15282	15718	21179	21179					0.07093550417118877
TKGAGKAK	8	Unmodified	_TKGAGKAK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4675637029	1	760.467564	759.460287	1.7147	0.0013039	-4.3135	-0.0032803	-2.5989	-0.0019763	760.4645518161963	58.317	0.024036	58.317	58.317	58.341	0	558	52	1.2873057	0.030549407	1.2873057	262.48672	0	6.229126						58	2	2	NaN	NaN	NaN	0.84945	1	4214	4214		0	0	1	6999.5			26553	2575	15282	15718	21180	21180					0.07093550417118877
TKGGPLCL	8	Unmodified	_TKGGPLCL_					0	0	0			REV__nc|ENSG00000177873|Q8N2I2|ZNF619	REV__nc|ENSG00000177873|Q8N2I2|ZNF619	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	788.4334863825001	1	788.433486	787.42621	1.6833	0.0013272	7.9134	0.0062392	9.5967	0.0075664	788.4396944448193	29.57	0.072416	29.57	29.546	29.618	0	477	49	1.3357477	0.028668165	1.3357477	272.19254	0	5.8418884						71	4	2	NaN	NaN	NaN	0.82332	1	4595	4595		6.0903	0.62448	1	6925.5	+		26554	13180	15283	15719	21181	21181					0.02399385933870235
TKGGPLCL	8	Unmodified						0	0	0			REV__nc|ENSG00000177873|Q8N2I2|ZNF619	REV__nc|ENSG00000177873|Q8N2I2|ZNF619	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	788.433486	787.42621	1.6833	0.0013272	7.9134	0.0062392	9.5967	0.0075664	788.4396944448193	29.57	0.072416	29.57	29.546	29.618	0	477	49	1.3357477	0.028668165	1.3357477	272.19254		5.8418884	0.0039531	0.00020672	0.00075972	NaN	6.0903	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6925.5	+		26555	13180	15283	15719							0.02399385933870235
TKGLAAGG	8	Unmodified	_TKGLAAGG_					0	0	0			REV__ENST00000450445.1_1_9:16726950-16727359:+|nuORF	REV__ENST00000450445.1_1_9:16726950-16727359:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3831653715001	1	674.383165	673.375889	1.1079	0.00074718	5.3313	0.0035953	6.4392	0.0043425	674.3867851665458	30.487	0.12066	30.487	30.439	30.56	0	642	106	1.2369217	0.06314516	1.2369217	252.78445	0	12.904709						125	6	2	NaN	NaN	NaN	0.84651	1	2690	2690		1.6704	0	1	12263	+		26556	12231	15284	15720	21182	21182					0.026135996003858963
TKGPPAPA	8	Unmodified	_TKGPPAPA_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9;REV__nc|ENSG00000070814|Q13428-8|TCOF1	ENSG00000188582|ENST00000340634|PAQR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.4144654999	1	738.414465	737.407189	1.7061	0.0012598	-5.0145	-0.0037028	-3.3084	-0.002443	738.4106794756387	55.701	0.1685	55.701	55.677	55.845	0	399	172	1.382264	0.102038026	1.382264	281.99863	0	20.816986						423	8	3	NaN	NaN	NaN	0.84876	1	3880	3880		0.39566	0	1	70853			26557	5555;8573	15285	15721	21183	21183					0.02798172634459206
TKGRGYKVK	9	Unmodified	_TKGRGYKVK_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.81673303825	2	518.816733	1035.61891	1.6899	0.00087676	6.2027	0.0032181	7.8926	0.0040948	518.8197222541905	21.585	0.12047	21.585	21.537	21.657	0	1230	37	0.8799654	0.022085905	0.8799654	357.14996	0	8.963959						128	6	3	NaN	NaN	NaN	0.66529	1	10043	10043		2.1763	0	1	13594	+		26558	8443	15286	15722	21184	21184					0.10252844325418664
TKGSGGGG	8	Unmodified	_TKGSGGGG_					0	0	0			REV__ENSG00000113722|ENST00000231656|CDX1	REV__ENSG00000113722|ENST00000231656|CDX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.2998296726001	1	620.29983	619.292553	1.4035	0.00087061	8.0083	0.0049675	9.4118	0.0058381	620.3048284007043	56.756	0.1681	56.756	56.756	56.924	0	687	124	1.2098682	0.0739305	1.2098682	247.68515	0	15.135117						349	8	2	NaN	NaN	NaN	0.84945	1	1140	1140		0	0	1	27555	+		26559	9159	15287	15723	21185	21185					-0.03232136847464062
TKGSGKGD	8	Unmodified	_TKGSGKGD_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.3788082751	1	749.378808	748.371532	1.3415	0.0010053	-6.2796	-0.0047058	-4.9382	-0.0037006	749.3743124585526	24.333	0.072407	24.333	24.285	24.357	0	567	109	1.2819146	0.06476545	1.2819146	261.45618	0	13.209442						250	4	4	NaN	NaN	NaN	0.83211	1	4023	4023		4.9097	0	1	63583			26560	5512	15288	15724	21186	21186					-0.012719096131945662
TKGVPATNPAP	11	Unmodified	_TKGVPATNPAP_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.790380902	2	526.790381	1051.56621	0.85882	0.00045242	1.9273	0.0010153	2.7861	0.0014677	527.2927264607316	31.258	0.072405	31.253	31.181	31.253	-0.0050716	1236	43	0.876284	0.025775313	0.8747646	355.58505	0	10.45929						89	4	3	NaN	NaN	NaN	0.76937	1	10482	10482		2.1026	0.17793	1	10510			26561	4916	15289	15725	21187	21187					0.04248841471940068
TKHLDFLK	8	Unmodified	_TKHLDFLK_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2925594502	2	501.292559	1000.57057	1.8465	0.00092564	-5.5708	-0.0027926	-3.7243	-0.001867	501.2896945048938	29.522	0.28966	29.522	29.449	29.739	0	1248	166	0.8689189	0.10114533	0.8689189	352.82858	0	41.070526						1137	13	4	NaN	NaN	NaN	0.84782	1	8627	8627		0.92586	0	1	228870			26562	5926	15290	15726	21188	21188					0.07030350685511166
TKKIVLRL	8	Unmodified	_TKKIVLRL_					0	0	0		ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.6771625478999	1	970.677163	969.669886	1.9147	0.0018585	-3.9306	-0.0038153	-2.0159	-0.0019568	970.6738992985446	53.828	0.14465	53.828	53.731	53.876	0	171	55	1.5174994	0.03189361	1.5174994	308.2315	0	6.47818						184	7	3	NaN	NaN	NaN	0.84727	1	7603	7603		1.2418	0	1	15413			26563	4410	15291	15727	21189	21189					0.18383793370253443
TKKIVLRL	8	Unmodified						0	0	0		ENST00000399253.3_1_X:140233088-140233355:+|nuORF;ENSG00000241343|ENST00000553110|RPL36A;ENSG00000165502|ENST00000298289|RPL36AL	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	ENST00000399253.3_1_X:140233088-140233355:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	970.677163	969.669886	-0.069254	-6.7224E-05	-3.2686	-0.0031728	-3.3379	-0.00324	970.6737618312043	53.826	0.18528	53.825	53.712	53.897	-0.00059128	168	37	1.5192716	0.021262407	1.5177522	308.59146		4.3187866	-0.0011564	0.00042765	0.00012636	NaN	1.2418	87	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5295.2			26564	4410	15291	15727							0.18383793370253443
TKLEWIIFH	9	Unmodified	_TKLEWIIFH_					0	0	0		nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	nc|ENSG00000108406|Q8IX18-3|DHX40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.2254864491333	3	396.225486	1185.65463	1.1847	0.0004694	-7.4631	-0.0029571	-6.2784	-0.0024877	396.22261085126274	14.477	0.095933	14.477	14.453	14.549	0	1416	25	0.76547134	0.014824688	0.76547134	465.2418	0	9.010223						51	5	2	NaN	NaN	NaN	0.66035	1	16038	16038		2.5994	1.0739	1	3892.9			26565	7922	15292	15728	21190	21190					0.06922881782406876
TKLGCGGA	8	Unmodified	_TKLGCGGA_					0	0	0			REV__ENST00000519948.3_1_12:74933163-74933244:+|nuORF	REV__ENST00000519948.3_1_12:74933163-74933244:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3552360615001	1	706.355236	705.34796	0.49515	0.00034975	3.515	0.0024828	4.0101	0.0028326	706.3576363212194	33.769	0.36197	33.769	33.624	33.986	0	687	97	1.2098682	0.05779767	1.2098682	247.03238	0	11.801193						322	16	2	NaN	NaN	NaN	0.84876	1	3312	3312		0.39566	0	1	46919	+		26566	12591	15293	15729	21191	21191					-0.016500466513548417
TKLGCGGA	8	Unmodified						0	0	0			REV__ENST00000519948.3_1_12:74933163-74933244:+|nuORF	REV__ENST00000519948.3_1_12:74933163-74933244:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	706.355236	705.34796	0.49515	0.00034975	3.515	0.0024828	4.0101	0.0028326	706.3576363212194	33.769	0.36197	33.769	33.624	33.986	0	687	97	1.2098682	0.05779767	1.2098682	247.03238		11.801193	0.0015528	-0.00021522	-0.00014274	NaN	0.39566	322	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46919	+		26567	12591	15293	15729							-0.016500466513548417
TKLIIFEGFYI	11	Unmodified	_TKLIIFEGFYI_					0	0	0			REV__ENST00000520572.1_1_8:143788537-143788795:-|nuORF	REV__ENST00000520572.1_1_8:143788537-143788795:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3841141117001	2	672.384114	1342.75368	0.94865	0.00063786	-10.841	-0.0072892	-9.8922	-0.0066514	672.3768228489419	40.943	0.096115	40.95	40.854	40.95	0.0074921	1185	31	0.90755045	0.018377125	0.906031	367.2385	0	7.436249						79	5	2	NaN	NaN	NaN	0.76488	1	18591	18591		2.8895	0.7869	1	6975	+		26568	12594	15294	15730	21192	21192					0.09600859956663044
TKLVEMPYIIT	11	Unmodified	_TKLVEMPYIIT_					0	0	0			REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.3676067677501	2	654.367607	1306.72066	0.86751	0.00056767	-10.636	-0.00696	-9.7687	-0.0063923	654.3617892314344	30.776	0.072392	30.77	30.77	30.842	-0.0057545	1104	34	0.9570911	0.020154953	0.95557165	387.3938	0	8.157959						67	4	2	NaN	NaN	NaN	0.73057	1	18051	18051		5.4499	1.5218	1	6705.9	+		26569	9398	15295	15731	21193	21193					0.07956909842300774
TKLVEMPYIIT	11	Unmodified						0	0	0			REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.367607	1306.72066	0.72389	0.00047369	-11.535	-0.0075484	-10.811	-0.0070747	654.3609462042572	30.946	0.09654	30.946	30.897	30.994	0	1107	34	0.9552588	0.020157099	0.9552588	386.65216		8.158813	0.087869	-0.00062634	-0.00015641	NaN	5.4499	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4805.4	+		26570	9398	15295	15731							0.07956909842300774
TKLVEMPYIIT	11	Unmodified						0	0	0			REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	654.367607	1306.72066	0.86751	0.00056767	-10.636	-0.00696	-9.7687	-0.0063923	654.3617892314344	30.776	0.072392	30.77	30.77	30.842	-0.0057545	1104	34	0.9570911	0.020154953	0.95557165	387.3938		8.157959	-0.087869	0.00055042	0.00015641	NaN	5.4499	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6705.9	+		26571	9398	15295	15731							0.07956909842300774
TKMHYHQV	8	Unmodified	_TKMHYHQV_					0	0	0			REV__ENSG00000008438|ENST00000008938|PGLYRP1	REV__ENSG00000008438|ENST00000008938|PGLYRP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	522.2581937041	2	522.258194	1042.50183	1.3617	0.00071114	-5.8032	-0.0030308	-4.4415	-0.0023196	522.2551504015242	27.591	0.096516	27.591	27.567	27.664	0	1266	49	0.85786515	0.029492497	0.85786515	348.1501	0	11.969025						112	5	2	NaN	NaN	NaN	0.78967	1	10312	10312		10.605	0.85897	1	14686	+		26572	8388	15296	15732	21194	21194					-0.017716368858600617
TKNQTEDL	8	Unmodified	_TKNQTEDL_					0	0	0		tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	tr|U7T1R0|U7T1R0_FUSNUUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murDPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4632661859999	1	948.463266	947.45599	1.5413	0.0014619	-3.0384	-0.0028818	-1.4971	-0.0014199	948.4605336983993	27.398	0.024183	27.398	27.374	27.398	0	303	55	1.4393384	0.03205657	1.4393384	292.4516	0	6.513397						58	2	2	NaN	NaN	NaN	0.78546	1	7011	7011		11.17	0.56537	1	4732.3			26573	13947	15297	15733	21195	21195					-0.019840035870970496
TKQYKFKPEIM	11	Unmodified	_TKQYKFKPEIM_					0	0	0		nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.8839553237001	2	706.883955	1411.75336	2.3509	0.0016618	-4.0267	-0.0028464	-1.6758	-0.0011846	706.8811136200551	21.946	0.072327	21.932	21.884	21.956	-0.013895	999	25	1.0210962	0.014600515	1.0195768	412.97873	0	5.9051514						25	4	2	NaN	NaN	NaN	0.6085	1	19206	19206		13.463	4.544	1	1854.6			26574	1445	15298	15734	21196	21196					0.06395116965154557
TKRLVIKL	8	Unmodified	_TKRLVIKL_					0	0	0			REV__ENST00000300038.7_1_11:18596926-18600273:-|nuORF	REV__ENST00000300038.7_1_11:18596926-18600273:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.6771625478999	1	970.677163	969.669886	-0.069254	-6.7224E-05	-3.2686	-0.0031728	-3.3379	-0.00324	970.6737618312043	53.826	0.18528	53.825	53.712	53.897	-0.00059128	168	37	1.5192716	0.021262407	1.5177522	308.59146	0	4.3187866						87	8	2	NaN	NaN	NaN	0.84876	1	7462	7462		0.39566	0	1	5295.2	+		26575	11647	15299	15735	21197	21197					0.18383793370253443
TKRMIPGQS	9	Unmodified	_TKRMIPGQS_					0	0	0		ENST00000469537.1_1_1:156169187-156169328:+|nuORF	ENST00000469537.1_1_1:156169187-156169328:+|nuORF	ENST00000469537.1_1_1:156169187-156169328:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.27912611145007	2	509.279126	1016.5437	1.9904	0.0010137	1.7419	0.00088711	3.7323	0.0019008	509.27830560137795	39.018	0.048225	39.023	39.023	39.071	0.0046806	1341	28	0.8117308	0.016631722	0.81021136	329.5368	0	6.751953						41	3	2	NaN	NaN	NaN	0.59509	1	9061	9061		5.6942	0.78442	1	2768.3			26576	7139	15300	15736	21198	21198					0.03608918802694916
TKSIGPSHAR	10	Unmodified	_TKSIGPSHAR_					0	0	0			REV__ENST00000265634.3_1_7:98257984-98258137:+|nuORF	REV__ENST00000265634.3_1_7:98257984-98258137:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2936220827	2	527.293622	1052.57269	0.90765	0.0004786	-9.201	-0.0048516	-8.2934	-0.004373	527.2883521020003	29.183	0.16895	29.175	29.127	29.296	-0.0077209	1239	85	0.87444305	0.051578403	0.8729236	354.83368	0	20.929596						299	8	3	NaN	NaN	NaN	0.6772	1	10523	10523		9.6116	0.48844	1	49368	+		26577	11570	15301	15737	21199	21199					0.04850779423327367
TKTRSIGV	8	Unmodified	_TKTRSIGV_					0	0	0		ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	ENST00000489369.5_1_9:676972-732786:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.5152421770002	1	861.515242	860.507966	-0.27547	-0.00023732	9.0044	0.0077575	8.729	0.0075201	861.5234351531226	55.698	0.096333	55.698	55.674	55.77	-0.00059128	288	49	1.4482387	0.028473496	1.4467193	294.68564	0	5.7937317						79	5	2	NaN	NaN	NaN	0.84727	1	5405	5405		1.2418	0	1	7190.5			26578	1624	15302	15738	21200	21200					0.07213204617346491
TKTSVMDR	8	Unmodified	_TKTSVMDR_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.4771421112001	1	937.477142	936.469866	1.8048	0.0016919	1.1471	0.0010754	2.9519	0.0027673	937.4783977097662	52.739	0.071911	52.739	52.715	52.787	0	138	37	1.5369828	0.021242142	1.5369828	312.3439	0	4.316803						49	4	2	NaN	NaN	NaN	0.83211	1	6757	6757		4.9097	0.94122	1	3025.3			26579	1046	15303	15739	21201	21201					-0.0009104935963932803
TKVAVAGA	8	Unmodified	_TKVAVAGA_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	358.71869601534996	2	358.718696	715.422839	1.6944	0.00060782	-8.889	-0.0031887	-7.1946	-0.0025808	358.71741582351035	55.701	0.12043	55.701	55.677	55.797	0	1434	37	0.75435036	0.022249103	0.75435036	307.95767	0	9.083008						178	6	4	NaN	NaN	NaN	0.84876	1	3527	3527		0.39566	0	1	15245			26580	4177	15304	15740	21202	21202					0.053744591515169304
TKVKDLVAY	9	Unmodified	_TKVKDLVAY_					0	0	0			REV__ENSG00000051382|ENST00000674063|PIK3CB	REV__ENSG00000051382|ENST00000674063|PIK3CB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8054996499501	2	518.8055	1035.59645	1.2249	0.0006355	7.4322	0.0038559	8.6571	0.0044914	518.8099206863301	32.852	0.21722	32.852	32.804	33.021	0	1248	37	0.8689189	0.022097886	0.8689189	352.66663	0	8.968842						148	10	3	NaN	NaN	NaN	0.65818	1	10039	10039		2.7852	0.32367	1	12827	+		26581	8495	15305	15741	21203	21203					0.08007200137149084
TKVKDLVAY	9	Unmodified						0	0	0			REV__ENSG00000051382|ENST00000674063|PIK3CB	REV__ENSG00000051382|ENST00000674063|PIK3CB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.8055	1035.59645	1.2249	0.0006355	7.4322	0.0038559	8.6571	0.0044914	518.8099206863301	32.852	0.21722	32.852	32.804	33.021	0	1248	37	0.8689189	0.022097886	0.8689189	352.66663		8.968842	0	0	0	NaN	2.7852	148	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12827	+		26582	8495	15305	15741							0.08007200137149084
TKVLFVFI	8	Unmodified	_TKVLFVFI_					0	0	0			REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.6022662703	1	966.602266	965.59499	1.8633	0.0018011	-4.6698	-0.0045139	-2.8066	-0.0027128	966.597866915552	53.674	0.22604	53.674	53.626	53.852	0	738	73	1.179155	0.043390036	1.179155	239.5218	0	8.813812						294	9	2	NaN	NaN	NaN	0.84876	1	7513	7513		0.39566	0	1	49270	+		26583	12560	15306	15742	21204	21204					0.11081610839028144
TKYPDDYPV	9	Unmodified	_TKYPDDYPV_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5149674054999	1	1097.51497	1096.50769	1.6106	0.0017677	6.6493	0.0072977	8.2599	0.0090654	1097.5224935249944	26.964	0.19307	26.964	26.94	27.133	0	111	106	1.5529068	0.061926723	1.5529068	314.91165	0	12.558014						284	9	3	NaN	NaN	NaN	0.3389	1	12681	12681		16.417	0.95397	1	38761	+		26584	11188	15307	15743	21205	21205					-0.03670259893192451
TLAGPAVV	8	Unmodified	_TLAGPAVV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4348665910001	1	727.434867	726.42759	-0.44662	-0.00032488	-5.8416	-0.0042494	-6.2882	-0.0045743	727.4301179518553	56.515	0.23984	56.514	56.466	56.706	-0.00056458	609	61	1.2567334	0.036000013	1.255214	256.45956	0	7.346466						262	11	2	NaN	NaN	NaN	0.84651	1	3631	3631		1.6704	0	1	25163			26585	606	15308	15744	21206	21206					0.053433432942824766
TLCNACNA	8	Unmodified	_TLCNACNA_					0	0	0			REV__ENSG00000081087|ENST00000193322|OSTM1	REV__ENSG00000081087|ENST00000193322|OSTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.16765574979996	2	405.167656	808.320759	0.9265	0.00037539	-1.6434	-0.00066587	-0.71693	-0.00029048	405.16709383084077	42.147	0.31183	42.147	42.051	42.363	0	1365	49	0.7969414	0.02959162	0.7969414	324.64352	0	12.054504						396	14	3	NaN	NaN	NaN	0.8439	1	4862	4862		3.1533	1.483	1	107390	+		26586	8656	15309	15745	21207	21207					-0.09106898254060525
TLCNACNA	8	Unmodified	_TLCNACNA_					0	0	0			REV__ENSG00000081087|ENST00000193322|OSTM1	REV__ENSG00000081087|ENST00000193322|OSTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.16765574979996	2	405.167656	808.320759	0.65519	0.00026546	-0.94207	-0.0003817	-0.28687	-0.00011623	405.16763781763245	42.241	0.28756	42.25	42.13	42.418	0.0089951	1362	46	0.79879075	0.027740657	0.7972713	325.39688	0	11.300476						383	13	4	NaN	NaN	NaN	0.8439	1	4768	4768		3.1533	1.7138	1	87284	+		26587	8656	15309	15745	21208	21208					-0.09106898254060525
TLCNACNA	8	Unmodified						0	0	0			REV__ENSG00000081087|ENST00000193322|OSTM1	REV__ENSG00000081087|ENST00000193322|OSTM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	405.167656	808.320759	0.9265	0.00037539	-1.6434	-0.00066587	-0.71693	-0.00029048	405.16709383084077	42.147	0.31183	42.147	42.051	42.363	0	1365	49	0.7969414	0.02959162	0.7969414	324.64352		12.054504	-0.051648	-0.00024783	-0.00016497	NaN	3.1533	396	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107390	+		26588	8656	15309	15745							-0.09106898254060525
TLCNACNA	8	Unmodified						0	0	0			REV__ENSG00000081087|ENST00000193322|OSTM1	REV__ENSG00000081087|ENST00000193322|OSTM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	405.167656	808.320759	0.65519	0.00026546	-0.94207	-0.0003817	-0.28687	-0.00011623	405.16763781763245	42.241	0.28756	42.25	42.13	42.418	0.0089951	1362	46	0.79879075	0.027740657	0.7972713	325.39688		11.300476	0.051648	0.00032051	0.00016497	NaN	3.1533	383	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87284	+		26589	8656	15309	15745							-0.09106898254060525
TLCNLPPFL	9	Unmodified	_TLCNLPPFL_					0	0	0		ENST00000556287.5_1_14:23285038-23285098:-|nuORF;ENST00000397528.8_1_14:23282630-23285098:-|nuORF	ENST00000556287.5_1_14:23285038-23285098:-|nuORF	ENST00000556287.5_1_14:23285038-23285098:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.27552079000003	2	509.275521	1016.53649	1.5022	0.00076505	2.2449	0.0011433	3.7472	0.0019083	509.27638598825996	20.525	0.072098	20.525	20.477	20.549	0	1314	67	0.8283535	0.04060483	0.8283535	336.28516	0	16.484283						136	4	3	NaN	NaN	NaN	0.27608	1	9238	9238		20.449	4.986	1	16727			26590	6808	15310	15746	21209	21209					0.02888186202255838
TLDMDQFMR	9	Unmodified	_TLDMDQFMR_					0	0	0		TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.75990890305	2	578.759909	1155.50526	2.0586	0.0011914	-0.5855	-0.00033886	1.4731	0.00085257	578.7605719791767	18.194	0.14392	18.18	18.156	18.3	-0.01395	1188	58	0.90571284	0.034929693	0.9041934	367.0993	0	14.157562						143	7	4	NaN	NaN	NaN	0.42817	1	14496	14496		9.746	5.0169	1	16428			26591	1107	15311	15747	21210	21210					-0.06626754894159603
TLDPVEKAL	9	Unmodified	_TLDPVEKAL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;ENST00000425843.1_1_X:120337800-120338163:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.28185737814994	2	493.281857	984.549162	1.438	0.00070935	-1.3817	-0.00068155	0.056361	2.7802E-05	493.2814581978025	20.694	0.12054	20.694	20.646	20.766	0	1329	52	0.81912065	0.031395137	0.81912065	332.68118	0	12.750946						147	6	3	NaN	NaN	NaN	0.034172	1	8044	8044		53.652	16.349	1	34519			26592	1743	15312	15748	21211	21211					0.05626920866131968
TLDPVEKAL	9	Unmodified						0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.R311C|1|0.31|ENSG00000109971|chr11:123059662-123059662|G/A|missense_variant;ENST00000425843.1_1_X:120337800-120338163:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.281857	984.549162	0.59741	0.00029469	0.041179	2.0313E-05	0.63859	0.00031501	493.28174903141	20.718	0.1446	20.704	20.656	20.801	-0.014086	1326	49	0.8209676	0.029549956	0.81944823	333.4313		12.001556	0.0051932	0.00078692	0.00016377	NaN	53.652	131	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32516			26593	1743	15312	15748							0.05626920866131968
TLDSFLIVF	9	Unmodified	_TLDSFLIVF_					0	0	0			REV__SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	REV__SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5819247587	1	1054.58192	1053.57465	1.3601	0.0014343	5.8488	0.006168	7.2089	0.0076023	1054.5889186969407	35.818	0.24099	35.819	35.746	35.987	0.00052643	63	127	1.5811787	0.07422948	1.5796592	320.80728	0	15.060516						444	11	3	NaN	NaN	NaN	0.12945	1	10586	10586		31.561	2.6655	1	99411	+		26594	11096	15313	15749	21212	21212					0.05000395388583456
TLEEGKGG	8	Unmodified	_TLEEGKGG_					0	0	0		ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.3941239883002	1	790.394124	789.386848	1.4526	0.0011481	1.8426	0.0014564	3.2952	0.0026045	790.3946562902864	27.084	0.12066	27.074	27.074	27.194	-0.010124	564	88	1.2837118	0.05207491	1.2821923	261.5778	0	10.6111145						126	6	2	NaN	NaN	NaN	0.77489	1	4534	4534		12.588	0	1	9210.1			26595	4775	15314	15750	21213	21213					-0.016270428159828043
TLEELIML	8	Unmodified	_TLEELIML_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.5274463472	1	961.527446	960.52017	1.9133	0.0018397	0.45756	0.00043996	2.3709	0.0022797	961.5277227671653	34.371	0.048168	34.37	34.346	34.395	-0.00064468	234	37	1.4802408	0.021314383	1.4787214	300.7037	0	4.3299255						59	3	2	NaN	NaN	NaN	0.54545	1	7203	7203		28.667	0	1	3483.2			26596	384	15315	15751	21214	21214					0.03833060245494835
TLESIMNTL	9	Unmodified	_TLESIMNTL_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;ENST00000472119.1_1_2:167159564-167162327:-|nuORF	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.2653500342	2	511.26535	1020.51615	1.4856	0.00075952	-2.871	-0.0014678	-1.3854	-0.00070832	511.2635435669044	25.153	0.14476	25.141	25.117	25.262	-0.012011	1281	34	0.84864825	0.020281553	0.8471288	344.50623	0	8.233246						94	7	2	NaN	NaN	NaN	0.41766	1	9196	9196		13.003	0.95414	1	10784			26597	4676	15316	15752	21215	21215					0.006709707517870811
TLESIMNTL	9	Unmodified						0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;ENST00000472119.1_1_2:167159564-167162327:-|nuORF	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.26535	1020.51615	1.899	0.00097091	-5.2933	-0.0027063	-3.3942	-0.0017354	511.2619897140582	25.129	0.14475	25.129	25.057	25.202	0	1281	40	0.84864825	0.023969114	0.84864825	344.50626		9.730194	-0.0059291	-0.0013306	0.00075972	NaN	13.003	108	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11118			26598	4676	15316	15752							0.006709707517870811
TLFALGLALG	10	Unmodified	_TLFALGLALG_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.2973104770999	2	488.29731	974.580068	0.96352	0.00047048	-1.5522	-0.00075792	-0.58865	-0.00028744	488.29651140749024	30.607	0.096527	30.601	30.577	30.673	-0.0057545	1281	43	0.84864825	0.025811553	0.8471288	344.72223	0	10.48468						82	5	2	NaN	NaN	NaN	0.73444	1	7587	7587		5.6942	1.7256	1	17585			26599	465	15317	15753	21216	21216					0.09176118971026881
TLFALGLALG	10	Unmodified						0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	488.29731	974.580068	1.4047	0.00068593	-2.2402	-0.0010939	-0.83544	-0.00040794	488.2960831024275	30.56	0.12067	30.56	30.56	30.68	0	1284	40	0.8468043	0.0239743	0.8468043	343.9732		9.738403	-0.020733	-0.00019455	-0.00016227	NaN	5.6942	156	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26610			26600	465	15317	15753							0.09176118971026881
TLFLNDEEADS	11	Unmodified	_TLFLNDEEADS_					0	0	0			REV__SETX-EIF3B|1|fusion	REV__SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.28023993595	2	627.28024	1252.54593	1.2949	0.00081228	-7.1858	-0.0045075	-5.8909	-0.0036953	627.778013993415	37.576	0.072308	37.579	37.53	37.603	0.0028229	1128	43	0.9424274	0.025678039	0.94090796	381.63107	0	10.398193						80	4	3	NaN	NaN	NaN	0.71564	1	17070	17070		6.4299	1.2411	1	5078.4	+		26601	9010	15318	15754	21217	21217					-0.0702441876917419
TLGASTVS	8	Unmodified	_TLGASTVS_					0	0	0		nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3;ENST00000461362.5_1_3:48675640-48681145:-|nuORF	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3883103289002	1	735.38831	734.381034	0.70091	0.00051544	5.7765	0.004248	6.4774	0.0047634	735.3926834300273	31.549	0.096563	31.549	31.501	31.597	0	585	49	1.2711272	0.028778553	1.2711272	259.34482	0	5.8716125						125	5	2	NaN	NaN	NaN	0.8439	1	3818	3818		3.1533	0	1	12186			26602	372	15319	15755	21218	21218					0.003218586723505723
TLGGVGKN	8	Unmodified	_TLGGVGKN_					0	0	0			REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.4202791593	1	745.420279	744.413003	1.1522	0.0008589	4.9231	0.0036698	6.0753	0.0045287	745.4238671127871	31.066	0.26545	31.066	31.018	31.284	0	576	139	1.2765218	0.08280027	1.2765218	260.38113	0	16.889359						633	12	4	NaN	NaN	NaN	0.57691	1	3979	3979		26.732	4.6052	1	212870	+		26603	12870	15320	15756	21219	21219					0.030572711461331892
TLGGVGKN	8	Unmodified						0	0	0			REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.420279	744.413003	1.1522	0.0008589	4.9231	0.0036698	6.0753	0.0045287	745.4238671127871	31.066	0.26545	31.066	31.018	31.284	0	576	139	1.2765218	0.08280027	1.2765218	260.38113		16.889359	0.0030587	0.00019723	0.00075972	NaN	26.732	633	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212870	+		26604	12870	15320	15756							0.030572711461331892
TLGGVGKN	8	Unmodified						0	0	0			REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	REV__ENST00000582151.1_1_17:7486853-7487033:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	745.420279	744.413003	1.7187	0.0012812	4.3557	0.0032468	6.0744	0.004528	745.4234230471843	31.065	0.26547	31.06	31.012	31.277	-0.0050716	576	160	1.2765218	0.095425844	1.2750024	260.38113		19.464676	-0.0030587	-0.00022571	-0.00075972	NaN	26.732	679	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232740	+		26605	12870	15320	15756							0.030572711461331892
TLGPNEERN	9	Unmodified	_TLGPNEERN_					0	0	0			REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2516198822501	2	515.25162	1028.48869	1.5848	0.00081656	2.343	0.0012072	3.9278	0.0020238	515.2534253249589	26.964	0.12062	26.964	26.915	27.036	0	1311	43	0.83019954	0.025839448	0.83019954	336.98224	0	10.488373						100	6	3	NaN	NaN	NaN	0.58159	1	9709	9709		6.2502	0.15988	1	9628.8	+		26606	9520	15321	15757	21220	21220					-0.024417964642225343
TLGSYAGILF	10	Unmodified	_TLGSYAGILF_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5615236675999	1	1041.56152	1040.55425	1.3291	0.0013843	-0.97072	-0.0010111	0.35835	0.00037324	1041.5618309823542	30.028	0.072428	30.021	29.997	30.07	-0.0064106	201	46	1.4997677	0.026610494	1.4982482	304.33893	0	5.3999023						83	4	3	NaN	NaN	NaN	0.56921	1	10023	10023		16.584	1.4088	1	6237.2	+		26607	10852	15322	15758	21221	21221					0.035592247287468126
TLGSYAGILF	10	Unmodified						0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1041.56152	1040.55425	1.3291	0.0013843	-0.97072	-0.0010111	0.35835	0.00037324	1041.5618309823542	30.028	0.072428	30.021	29.997	30.07	-0.0064106	201	46	1.4997677	0.026610494	1.4982482	304.33893		5.3999023	-0.00367	-0.00040814	-0.00075972	NaN	16.584	83	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6237.2	+		26608	10852	15322	15758							0.035592247287468126
TLGVDLVAL	9	Unmodified	_TLGVDLVAL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5400599440001	1	900.54006	899.532783	1.1206	0.0010091	-1.1623	-0.0010467	-0.041754	-3.7601E-05	900.5394349891444	32.272	0.04829	32.268	32.22	32.268	-0.0037613	333	49	1.4215236	0.028522015	1.4200041	289.05228	0	5.799652						77	3	2	NaN	NaN	NaN	0.10956	1	5952	5952		34.439	4.8405	1	10859			26609	965	15323	15759	21222	21222					0.07899839700041866
TLGVDLVAL	9	Unmodified						0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	1.3906	0.0012523	0.15415	0.00013882	1.5448	0.0013911	900.540255980439	32.297	0.12068	32.297	32.225	32.345	0	339	49	1.4179583	0.028524995	1.4179583	288.3273		5.8002625	0.014485	0.00047082	-0.0010229	NaN	34.439	211	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23665			26610	965	15323	15759							0.07899839700041866
TLGVLSIL	8	Unmodified	_TLGVLSIL_					0	0	0		nc|ENSG00000152558|Q8N131-2|TMEM123;ENSG00000152558|ENST00000398136|TMEM123	nc|ENSG00000152558|Q8N131-2|TMEM123	nc|ENSG00000152558|Q8N131-2|TMEM123	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.5236815983002	1	815.523682	814.516405	2.417	0.0019711	0.68519	0.00055879	3.1022	0.0025299	815.5245481665916	29.329	0.43439	29.329	29.256	29.691	0	450	232	1.3518641	0.13816488	1.3518641	275.31964	0	28.13855						1248	19	5	NaN	NaN	NaN	0.0253	1	4954	4954		94.648	0	1	913760			26611	3777	15324	15760	21223	21223					0.10172758533963133
TLGYQLIL	8	Unmodified	_TLGYQLIL_					0	0	0			REV__RPIA|p.R136C|1|0.24|ENSG00000153574|chr2:88729281-88729281|C/T|missense_variant	REV__RPIA|p.R136C|1|0.24|ENSG00000153574|chr2:88729281-88729281|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.77621089425	2	460.776211	919.537869	1.1009	0.00050726	-2.5061	-0.0011548	-1.4053	-0.00064751	460.77536274373233	21.176	0.12042	21.162	21.114	21.234	-0.014004	1332	28	0.8172735	0.01662457	0.81575406	332.2541	0	6.758545						82	6	2	NaN	NaN	NaN	0.84756	1	6285	6285		1.072	0	1	4953.5	+		26612	10075	15325	15761	21224	21224					0.07488143562670757
TLHNQWRRSIK	11	Unmodified	_TLHNQWRRSIK_					0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.2723812597667	3	480.272381	1437.79531	1.7576	0.00084414	0.30537	0.00014666	2.063	0.0009908	480.2722875238427	23.923	0.072401	23.923	23.923	23.995	0	1362	25	0.79879075	0.01479423	0.79879075	484.5137	0	8.973541						38	4	2	NaN	NaN	NaN	0.7806	1	20318	20318		0.1369	0	1	3005.4	+		26613	9104	15326	15762	21225	21225					0.09392853488543551
TLHNQWRRSIK	11	Unmodified						0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	480.272381	1437.79531	1.7576	0.00084414	0.30537	0.00014666	2.063	0.0009908	480.2722875238427	23.923	0.072401	23.923	23.923	23.995	0	1362	25	0.79879075	0.01479423	0.79879075	484.5137		8.973541	-0.1021	0.0011746	0.00075972	NaN	0.1369	38	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3005.4	+		26614	9104	15326	15762							0.09392853488543551
TLIAAVVAM	9	Unmodified	_TLIAAVVAM_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.5223013898001	1	888.522301	887.515025	1.007	0.00089477	-0.30612	-0.00027199	0.70091	0.00062277	888.5228297456648	31.284	0.12064	31.284	31.235	31.356	0	297	67	1.4428991	0.03916776	1.4428991	293.45862	0	7.965973						169	6	3	NaN	NaN	NaN	0.12945	1	5913	5913		31.561	1.9627	1	24664	+		26615	8464	15327	15763	21226	21226					0.06676801173534841
TLIAAVVAM	9	Unmodified						0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	888.522301	887.515025	1.007	0.00089477	-0.30612	-0.00027199	0.70091	0.00062277	888.5228297456648	31.284	0.12064	31.284	31.235	31.356	0	297	67	1.4428991	0.03916776	1.4428991	293.45862		7.965973	0.015114	0.00013343	-0.0010203	NaN	31.561	169	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24664	+		26616	8464	15327	15763							0.06676801173534841
TLICMQLVL	9	Unmodified	_TLICMQLVL_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5784360602	1	1033.57844	1032.57116	1.0926	0.0011293	-4.0981	-0.0042357	-3.0055	-0.0031065	1033.5749368862148	30.824	0.14478	30.818	30.746	30.891	-0.0057564	144	64	1.533442	0.03717959	1.5319226	311.20377	0	7.54541						182	6	3	NaN	NaN	NaN	0.21199	1	9691	9691		24.562	2.727	1	18677	+		26617	10779	15328	15764	21227	21227					0.05617686018695167
TLIDLPGITR	10	Unmodified	_TLIDLPGITR_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.8295060625	2	549.829506	1097.64446	1.8519	0.0010182	0.28978	0.00015933	2.1417	0.0011776	549.8299758850884	25.974	0.14482	25.974	25.901	26.046	0	1260	82	0.8615505	0.04971218	0.8615505	349.41666	0	20.161621						269	7	3	NaN	NaN	NaN	0.13615	1	12761	12761		41.017	0	1	41046			26618	3963	15329	15765	21228	21228					0.09954274057167822
TLIDLPGITR	10	Unmodified	_TLIDLPGITR_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.8295060625	2	549.829506	1097.64446	1.2438	0.00068389	0.63274	0.0003479	1.8766	0.0010318	549.8297431237942	26.553	0.096508	26.542	26.494	26.59	-0.010645	1230	58	0.8799654	0.034975052	0.878446	356.8851	0	14.184753						137	5	3	NaN	NaN	NaN	0.10967	1	12430	12430		44.633	0	1	19907			26619	3963	15329	15765	21229	21229					0.09954274057167822
TLIDLPGITR	10	Unmodified	_TLIDLPGITR_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.8295060625	2	549.829506	1097.64446	2.1162	0.0011635	1.357	0.00074611	3.4732	0.0019097	549.8302856580965	25.998	0.12067	25.987	25.914	26.035	-0.011137	1263	82	0.85970795	0.04971218	0.8581885	348.66934	0	20.161621						270	6	3	NaN	NaN	NaN	0.0035208	1	12431	12431		80.901	0	1	40128			26620	3963	15329	15765	21230	21230					0.09954274057167822
TLIDLPGITR	10	Unmodified						0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.829506	1097.64446	1.5512	0.00085287	5.1982	0.0028581	6.7493	0.003711	549.8331750905583	26.65	0.048271	26.65	26.65	26.698	0	1194	28	0.902037	0.016542077	0.902037	365.8366		6.7089233	0.053747	0.0045391	0.011796	NaN	44.633	37	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2595.2			26621	3963	15329	15765							0.09954274057167822
TLIFRSRRYC	10	Unmodified	_TLIFRSRRYC_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.8586062404502	2	657.858606	1313.70266	1.2373	0.00081395	-1.5221	-0.0010013	-0.2848	-0.00018736	658.3598168090122	29.039	0.14478	29.039	29.015	29.16	0	1212	82	0.8910048	0.04964775	0.8910048	360.6245	0	20.09436						342	7	5	NaN	NaN	NaN	0.73444	1	19015	19015		5.6942	0.96509	1	29188			26622	5485	15330	15766	21231	21231					0.058356324308306284
TLILRDFY	8	Unmodified	_TLILRDFY_					0	0	0			REV__nc|ENSG00000089053|Q9UJX4-2|ANAPC5	REV__nc|ENSG00000089053|Q9UJX4-2|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5775080828	1	1040.57751	1039.57023	1.6057	0.0016708	-0.77518	-0.00080663	0.8305	0.0008642	1040.5768698230684	29.787	0.12065	29.787	29.715	29.836	0	120	61	1.5476005	0.035392284	1.5476005	314.04926	0	7.1820374						114	6	2	NaN	NaN	NaN	0.77489	1	10208	10208		12.588	0	1	8391.4	+		26623	8707	15331	15767	21232	21232					0.05202930965674568
TLISNSGV	8	Unmodified	_TLISNSGV_					0	0	0			REV__ENSG00000081842|ENST00000529310|PCDHA6	REV__ENSG00000081842|ENST00000529310|PCDHA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.4305094946002	1	790.430509	789.423233	1.4292	0.0011297	4.3674	0.0034521	5.7966	0.0045818	790.4336786085031	28.894	0.12069	28.885	28.837	28.958	-0.0083485	540	46	1.2980826	0.02693522	1.2965631	264.50586	0	5.488495						122	6	3	NaN	NaN	NaN	0.83211	1	4539	4539		4.9097	0	1	10516	+		26624	8665	15332	15768	21233	21233					0.020098340807294335
TLISNSGV	8	Unmodified						0	0	0			REV__ENSG00000081842|ENST00000529310|PCDHA6	REV__ENSG00000081842|ENST00000529310|PCDHA6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	790.430509	789.423233	1.4292	0.0011297	4.3674	0.0034521	5.7966	0.0045818	790.4336786085031	28.894	0.12069	28.885	28.837	28.958	-0.0083485	540	46	1.2980826	0.02693522	1.2965631	264.50586		5.488495	0.007494	0.0001081	0.0010361	NaN	4.9097	122	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10516	+		26625	8665	15332	15768							0.020098340807294335
TLIVIGQSS	9	Unmodified	_TLIVIGQSS_					0	0	0		ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392003	1	917.530224	916.522947	1.7425	0.0015988	0.62443	0.00057294	2.367	0.0021718	917.5307996337158	57.669	0.11998	57.669	57.549	57.669	0	348	46	1.412609	0.026752234	1.412609	287.15933	0	5.438263						111	6	2	NaN	NaN	NaN	0.66529	1	6358	6358		2.1763	0	1	7868.8			26626	3979	15333	15769	21234	21234					0.061346516946855445
TLIVIGQSS	9	Unmodified						0	0	0		ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	917.530224	916.522947	0.78192	0.00071744	4.6134	0.0042329	5.3953	0.0049503	917.5341728152656	57.979	0.048	57.978	57.978	58.026	-0.00051117	339	37	1.4179583	0.021393776	1.4164388	288.24673		4.3489685	0.15465	0.0024726	0.0019149	NaN	2.1763	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2237.7			26627	3979	15333	15769							0.061346516946855445
TLIWKGDSKR	10	Unmodified	_TLIWKGDSKR_					0	0	0			REV__nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	REV__nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.89966190116667	3	401.899662	1202.67716	1.147	0.000461	7.4834	0.0030076	8.6304	0.0034686	401.9029080766278	14.476	0.071886	14.465	14.441	14.513	-0.011218	1428	43	0.7580582	0.025954425	0.75653875	460.6612	0	15.772186						112	4	3	NaN	NaN	NaN	0.66626	1	15913	15913		8.3538	5.3173	1	12663	+		26628	10740	15334	15770	21235	21235					0.08392481180044342
TLIYYYVLFI	10	Unmodified	_TLIYYYVLFI_					0	0	0		ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	ENST00000297857.3_1_8:124261964-124262105:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.36793273125	2	654.367933	1306.72131	0.85295	0.00055814	-4.8052	-0.0031444	-3.9523	-0.0025862	654.3646188280334	29.111	0.048254	29.103	29.103	29.151	-0.0077209	909	91	1.0757661	0.054611206	1.0742466	435.4289	0	22.104523						100	3	3	NaN	NaN	NaN	0.78133	1	18054	18054		0.19249	0	1	7065.7			26629	6404	15335	15771	21236	21236					0.08022072553649195
TLKAAGIA	8	Unmodified	_TLKAAGIA_					0	0	0		ENSG00000186132|ENST00000334816|C2orf76	ENSG00000186132|ENST00000334816|C2orf76	ENSG00000186132|ENST00000334816|C2orf76	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.4614156924999	1	744.461416	743.454139	2.0066	0.0014939	-11.082	-0.0082504	-9.0757	-0.0067565	744.4532901616177	55.989	0.16792	55.989	55.941	56.109	0	582	223	1.2729256	0.1334145	1.2729256	259.65372	0	27.214127						524	8	4	NaN	NaN	NaN	0.84876	1	3968	3968		0.39566	0	1	286420			26630	5455	15336	15772	21237	21237					0.07215032185604286
TLKAAGIA	8	Unmodified						0	0	0		ENSG00000186132|ENST00000334816|C2orf76	ENSG00000186132|ENST00000334816|C2orf76	ENSG00000186132|ENST00000334816|C2orf76	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	744.461416	743.454139	0.25328	0.00018856	-9.2336	-0.0068741	-8.9803	-0.0066855	744.4549413390395	55.987	0.21613	55.986	55.938	56.154	-0.00059128	579	310	1.2747238	0.18596768	1.2732043	260.0205		37.93402	-0.0013761	0.00065068	0.00013937	NaN	0.39566	610	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327510			26631	5455	15336	15772							0.07215032185604286
TLKCDSSK	8	Unmodified	_TLKCDSSK_					0	0	0		ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.2234852195	2	441.223485	880.432418	0.57685	0.00025452	-1.3463	-0.00059401	-0.76944	-0.00033949	441.2249576218502	35.048	0.048256	35.048	35.048	35.096	0	1449	37	0.74507743	0.022261143	0.74507743	303.10144	0	9.055969						44	3	3	NaN	NaN	NaN	0.84512	1	5807	5807		2.4615	0	1	2559.9			26632	4019	15337	15773	21238	21238					-0.012581406252593297
TLKCDSSK	8	Unmodified						0	0	0		ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	ENSG00000159307|ENST00000360835|SCUBE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	441.223485	880.432418	1.6108	0.00071073	-7.4824	-0.0033014	-5.8716	-0.0025907	441.219324520643	35.094	0.048267	35.094	35.046	35.094	-4.5776E-05	1446	37	0.7469324	0.022263587	0.74541295	303.85608		9.056946	0.023397	-0.0028759	0.00016778	NaN	2.4615	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2914			26633	4019	15337	15773							-0.012581406252593297
TLKFFQTKLK	10	Unmodified	_TLKFFQTKLK_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3844484627	2	627.384448	1252.75434	1.0856	0.00068109	-3.8455	-0.0024126	-2.7599	-0.0017315	627.3825040726344	39.524	0.1682	39.529	39.481	39.649	0.0053368	1203	91	0.8965218	0.05520886	0.89500237	363.04114	0	22.356506						347	8	4	NaN	NaN	NaN	0.77928	1	17084	17084		0.69115	0	1	85496			26634	7986	15338	15774	21239	21239					0.1380769939635229
TLKRRLLI	8	Unmodified	_TLKRRLLI_					0	0	0			REV__nc|ENSG00000140798|Q96J65-4|ABCC12	REV__nc|ENSG00000140798|Q96J65-4|ABCC12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.6989606225003	1	1012.69896	1011.69168	0.27373	0.0002772	0.27073	0.00027417	0.54446	0.00055138	1012.7003766991724	57.955	0.024124	57.954	57.93	57.954	-0.00050735	96	49	1.5617468	0.028277874	1.5602274	317.03427	0	5.7404175						54	2	2	NaN	NaN	NaN	0.84887	1	8893	8893		0.32989	0	1	5060.4	+		26635	9809	15339	15775	21240	21240					0.18630598118852504
TLLHYYND	8	Unmodified	_TLLHYYND_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4890870059999	1	1038.48909	1037.48181	1.0917	0.0011337	-10.096	-0.010484	-9.004	-0.0093505	1038.4776751462243	36.878	0.16821	36.88	36.832	37	0.0022507	201	70	1.4997677	0.040798426	1.4982482	304.35074	0	8.279297						256	8	3	NaN	NaN	NaN	0.75561	1	9885	9885		15.175	3.6269	1	24802	+		26636	11366	15340	15776	21241	21241					-0.03543109344809636
TLLIGCCC	8	Unmodified	_TLLIGCCC_					0	0	0			REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.18700259589997	2	413.187003	824.359452	1.0628	0.00043914	-9.4121	-0.003889	-8.3493	-0.0034498	413.1830084567615	36.854	0.12013	36.856	36.832	36.952	0.0022507	1431	40	0.75620437	0.024101853	0.7546849	307.94894	0	9.815002						111	6	2	NaN	NaN	NaN	0.84692	1	4958	4958		1.4396	0.19772	1	9549.6	+		26637	11530	15341	15777	21242	21242					-0.05975308943902746
TLLKVSVYGL	10	Unmodified	_TLLKVSVYGL_					0	0	0			REV__ENSG00000166173|ENST00000299213|LARP6	REV__ENSG00000166173|ENST00000299213|LARP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.89362534110006	3	364.893625	1091.65905	1.6227	0.0005921	8.3112	0.0030327	9.9339	0.0036248	364.8967159906691	13.949	0.16782	13.938	13.842	14.01	-0.010672	1440	31	0.7506418	0.018544972	0.7491224	456.6793	0	11.282471						121	8	2	NaN	NaN	NaN	0.77918	1	12167	12167		0.71611	0.20007	1	17528	+		26638	10415	15342	15778	21243	21243					0.11688346205346534
TLLLAVSQ	8	Unmodified	_TLLLAVSQ_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.5138451935002	1	844.513845	843.506569	1.076	0.00090872	0.023526	1.9868E-05	1.0996	0.00092859	844.5136831419837	30.849	0.048256	30.849	30.825	30.873	0	393	61	1.3858368	0.03572464	1.3858368	282.0776	0	7.271515						124	3	3	NaN	NaN	NaN	0.84727	1	5320	5320		1.2418	0	1	24127			26639	299	15343	15779	21244	21244					0.07855570528579392
TLLLAVSQ	8	Unmodified						0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	844.513845	843.506569	0.82244	0.00069456	-0.063249	-5.3415E-05	0.75919	0.00064115	844.513340613509	30.92	0.07242	30.915	30.867	30.94	-0.0050716	387	67	1.389409	0.039297104	1.3878895	282.8047		7.998657	0.033125	-4.9146E-05	0.0010263	NaN	1.2418	125	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20629			26640	299	15343	15779							0.07855570528579392
TLLLNAAQN	9	Unmodified	_TLLLNAAQN_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.2718240081	2	479.271824	956.529095	0.65205	0.00031251	0.72366	0.00034683	1.3757	0.00065934	479.27205701870395	35.241	0.12067	35.241	35.217	35.337	0	1242	31	0.87260187	0.018412888	0.87260187	354.54523	0	7.4813232						69	6	2	NaN	NaN	NaN	0.55027	1	7255	7255		7.5404	0	1	5867.7			26641	863	15344	15780	21245	21245					0.049091699261907706
TLLLRRFGKK	10	Unmodified	_TLLLRRFGKK_					0	0	0			REV__ENST00000284320.5_1_3:100119782-100120241:-|nuORF	REV__ENST00000284320.5_1_3:100119782-100120241:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1231.7997372995999	1	1231.79974	1230.79246	1.3609	0.0016764	5.6952	0.0070154	7.0562	0.0086918	1231.8075289229323	41.28	0.048164	41.288	41.24	41.288	0.0082588	60	52	1.582944	0.030014992	1.5814246	320.56708	0	6.0784607						73	3	2	NaN	NaN	NaN	0.77421	1	16566	16566		1.9246	0.41924	1	7153.3	+		26642	11613	15345	15781	21246	21246					0.18629630101668226
TLLNGAIG	8	Unmodified	_TLLNGAIG_					0	0	0			REV__nc|ENSG00000121853|Q92847-2|GHSR	REV__nc|ENSG00000121853|Q92847-2|GHSR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.72397835850006	2	379.723978	757.433404	0.22975	8.7242E-05	3.8016	0.0014436	4.0314	0.0015308	379.7253831572633	53.713	0.10556	53.712	53.671	53.777	-0.00059128	1467	28	0.7339432	0.01670587	0.7324238	299.31494	0	6.8129272						48	4	2	NaN	NaN	NaN	0.84692	1	4110	4110		1.4396	0	1	3989.7	+		26643	9334	15346	15782	21247	21247					0.04498441805958464
TLLSSSGA	8	Unmodified	_TLLSSSGA_					0	0	0		nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.3883103289002	1	735.38831	734.381034	0.83122	0.00061127	4.3504	0.0031992	5.1816	0.0038105	735.3918616759629	31.524	0.096556	31.519	31.495	31.592	-0.0044174	582	61	1.2729256	0.035965562	1.2714062	259.71173	0	7.3379517						126	5	2	NaN	NaN	NaN	0.82332	1	3743	3743		6.0903	0	1	12366			26644	2458	15347	15783	21248	21248					0.003218586723505723
TLLVFRFVNS	10	Unmodified	_TLLVFRFVNS_					0	0	0			REV__SLITRK2|p.D532Tfs*9|1|0.24|ENSG00000185985|chrX:145824017-145824017|G/-|frameshift_variant	REV__SLITRK2|p.D532Tfs*9|1|0.24|ENSG00000185985|chrX:145824017-145824017|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.23264102366676	3	399.232641	1194.67609	1.0063	0.00040173	6.7902	0.0027109	7.7965	0.0031126	399.2355802511218	35.022	0.12066	35.022	34.998	35.119	-4.5776E-05	1428	67	0.7580582	0.040767908	0.75653875	460.69614	0	24.77597						167	6	4	NaN	NaN	NaN	0.76892	1	15674	15674		1.3696	0	1	16338	+		26645	10984	15348	15784	21249	21249					0.08654266811163325
TLMGAHGS	8	Unmodified	_TLMGAHGS_					0	0	0			REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.3610497209002	1	773.36105	772.353773	1.2385	0.00095779	-9.337	-0.0072209	-8.0985	-0.0062631	773.3541512336956	32.803	0.24126	32.8	32.751	32.993	-0.0031052	540	67	1.2980826	0.039511442	1.2965631	264.6058	0	8.054138						294	11	3	NaN	NaN	NaN	0.72043	1	4310	4310		17.78	4.0433	1	33821	+		26646	8163	15349	15785	21250	21250					-0.04150948139681532
TLMGAHGS	8	Unmodified						0	0	0			REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	773.36105	772.353773	1.3572	0.0010496	-9.4835	-0.0073341	-8.1262	-0.0062845	773.353826636689	32.78	0.19306	32.78	32.756	32.949	0	540	73	1.2980826	0.043103337	1.2980826	264.6058		8.786346	-0.0099751	-5.9541E-05	0.00075972	NaN	17.78	260	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34097	+		26647	8163	15349	15785							-0.04150948139681532
TLMGAHGS	8	Unmodified						0	0	0			REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	REV__BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	773.36105	772.353773	1.2385	0.00095779	-9.337	-0.0072209	-8.0985	-0.0062631	773.3541512336956	32.803	0.24126	32.8	32.751	32.993	-0.0031052	540	67	1.2980826	0.039511442	1.2965631	264.6058		8.054138	0.0099751	5.3706E-05	-0.00075972	NaN	17.78	294	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33821	+		26648	8163	15349	15785							-0.04150948139681532
TLNGSGPP	8	Unmodified	_TLNGSGPP_					0	0	0			REV__ENST00000482878.5_1_16:772872-773550:-|nuORF	REV__ENST00000482878.5_1_16:772872-773550:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3729946157001	1	742.372995	741.365718	1.6242	0.0012058	-5.6936	-0.0042268	-4.0694	-0.003021	742.3674671924565	23.682	0.072285	23.682	23.658	23.73	0	600	82	1.2621325	0.048581958	1.2621325	257.46524	0	9.910339						124	4	2	NaN	NaN	NaN	0.83211	1	3936	3936		4.9097	1.3365	1	18494	+		26649	12389	15350	15786	21251	21251					-0.015310081248458118
TLPEPAGA	8	Unmodified	_TLPEPAGA_					0	0	0			REV__nc|ENSG00000169398|Q05397-4|PTK2	REV__nc|ENSG00000169398|Q05397-4|PTK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.3933957068	1	755.393396	754.386119	1.3882	0.0010487	4.3342	0.003274	5.7224	0.0043227	755.3970762544694	36.806	0.16841	36.807	36.735	36.904	0.0016785	561	55	1.2855089	0.032348156	1.2839894	262.15158	0	6.59671						211	8	3	NaN	NaN	NaN	0.8439	1	4065	4065		3.1533	0	1	22318	+		26650	10549	15351	15787	21252	21252					-0.0008983746505464296
TLPFRIFYF	9	Unmodified	_TLPFRIFYF_					0	0	0		LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant;ENSG00000139679|ENST00000620633|LPAR6	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3316846107	2	602.331685	1202.64882	0.61035	0.00036764	-4.411	-0.0026569	-3.8006	-0.0022892	602.328445672916	33.576	0.14468	33.576	33.528	33.673	0	1170	55	0.91673553	0.03305739	0.91673553	371.39514	0	13.392487						209	7	3	NaN	NaN	NaN	0.19268	1	16557	16557		25.801	11.759	1	30987			26651	3233	15352	15788	21253	21253					0.055597832707235284
TLPFRIFYF	9	Unmodified	_TLPFRIFYF_					0	0	0		LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant;ENSG00000139679|ENST00000620633|LPAR6	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3316846107	2	602.331685	1202.64882	0.25775	0.00015525	-2.3053	-0.0013885	-2.0475	-0.0012333	602.3303074723707	33.695	0.12062	33.694	33.621	33.742	-0.0018501	1164	55	0.9204082	0.033053815	0.91888875	372.88303	0	13.391022						182	6	2	NaN	NaN	NaN	0.38313	1	15911	15911		14.425	3.8201	1	30403			26652	3233	15352	15788	21254	21254					0.055597832707235284
TLPGAGGP	8	Unmodified	_TLPGAGGP_					0	0	0			REV__ENST00000371822.9_1_X:117480385-117480463:+|nuORF	REV__ENST00000371822.9_1_X:117480385-117480463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3566162700001	1	669.356616	668.34934	1.216	0.00081394	2.6829	0.0017958	3.8989	0.0026097	669.3582038104757	27.494	0.1448	27.484	27.46	27.605	-0.009552	681	70	1.2134778	0.041526556	1.2119584	248.03049	0	8.487869						118	7	2	NaN	NaN	NaN	0.84692	1	2474	2474		1.4396	0	1	10069	+		26653	11904	15353	15789	21255	21255					0.0018991070905940433
TLPGGAGKG	9	Unmodified	_TLPGGAGKG_					0	0	0		nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1	nc|ENSG00000181090|Q9H9B1-4|EHMT1	nc|ENSG00000181090|Q9H9B1-4|EHMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.4202791593001	1	757.420279	756.413003	1.4381	0.0010893	-10.272	-0.0077804	-8.8341	-0.0066911	757.4122733137692	30.704	0.2413	30.704	30.656	30.897	0	546	130	1.294491	0.07729685	1.294491	263.97076	0	15.762268						627	11	4	NaN	NaN	NaN	0.45297	1	4175	4175		11.548	1.4969	1	190530			26654	5213	15354	15790	21256	21256					0.025052711461398758
TLPLGIYS	8	Unmodified	_TLPLGIYS_					0	0	0			REV__nc|ENSG00000141458|O15118-2|NPC1;REV__NPC1-ANKRD29|1|fusion	REV__nc|ENSG00000141458|O15118-2|NPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.487296092	1	863.487296	862.48002	0.78649	0.00067912	-0.9905	-0.00085528	-0.20401	-0.00017616	863.4862102255041	32.344	0.16893	32.341	32.292	32.461	-0.0037613	513	55	1.3142352	0.032289624	1.3127158	267.40918	0	6.5700073						252	8	4	NaN	NaN	NaN	0.8439	1	5430	5430		3.1533	0	1	24160	+		26655	9825;13273	15355	15791	21257	21257					0.043278816372207984
TLPSPGEI	8	Unmodified	_TLPSPGEI_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	813.4352605215	1	813.435261	812.427984	2.056	0.0016724	4.5975	0.0037398	6.6535	0.0054122	813.4394979211747	29.811	0.096561	29.811	29.787	29.884	0	408	52	1.3769034	0.030383706	1.3769034	280.43106	0	6.188202						106	5	2	NaN	NaN	NaN	0.80071	1	4920	4920		9.1232	3.0329	1	9295.2			26656	3568	15356	15792	21258	21258					0.014267182234789288
TLPTTSTF	8	Unmodified	_TLPTTSTF_					0	0	0		ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.4458252078	1	867.445825	866.438549	1.2864	0.0011159	-7.9096	-0.0068612	-6.6232	-0.0057453	867.4390744771259	35.601	0.096508	35.602	35.553	35.65	0.00053024	414	37	1.3733286	0.021450758	1.3718091	279.41302	0	4.3642883						58	5	2	NaN	NaN	NaN	0.80071	1	5477	5477		9.1232	2.26	1	3221.3			26657	6178	15357	15793	21259	21259					-1.2991220955882454E-05
TLQAAAPP	8	Unmodified	_TLQAAAPP_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.4250301861999	1	768.42503	767.417754	1.2624	0.00097008	5.3973	0.0041474	6.6597	0.0051175	768.4286932546884	33.261	0.26546	33.259	33.21	33.476	-0.0024757	534	151	1.3016734	0.0898658	1.300154	265.3675	0	18.320633						568	12	4	NaN	NaN	NaN	0.75561	1	4252	4252		15.175	0	1	153440	+		26658	11417	15358	15794	21260	21260					0.024741552888940532
TLQLWVYI	8	Unmodified	_TLQLWVYI_					0	0	0			REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2973104771	2	518.29731	1034.58007	1.2731	0.00065982	-1.696	-0.00087905	-0.42297	-0.00021923	518.2965654553396	26.673	0.0965	26.663	26.639	26.735	-0.010643	1182	52	0.9093879	0.031242788	0.90786844	369.0965	0	12.680634						93	5	2	NaN	NaN	NaN	0.84606	1	9781	9781		1.9246	0	1	7333.4	+		26659	11615	15359	15795	21261	21261					0.06416118971037577
TLQLWVYI	8	Unmodified						0	0	0			REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.29731	1034.58007	1.6728	0.00086698	-1.874	-0.00097127	-0.20121	-0.00010429	518.296702181646	26.65	0.09654	26.65	26.625	26.722	0	1185	55	0.90755045	0.033085942	0.90755045	368.35074		13.428741	-0.0065785	-7.0628E-05	-0.00015899	NaN	1.9246	112	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9729.2	+		26660	11615	15359	15795							0.06416118971037577
TLQLWVYI	8	Unmodified						0	0	0			REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.29731	1034.58007	1.2731	0.00065982	-1.696	-0.00087905	-0.42297	-0.00021923	518.2965654553396	26.673	0.0965	26.663	26.639	26.735	-0.010643	1182	52	0.9093879	0.031242788	0.90786844	369.0965		12.680634	0.0065785	0.00011381	0.00015899	NaN	1.9246	93	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7333.4	+		26661	11615	15359	15795							0.06416118971037577
TLQQMEKVL	9	Unmodified	_TLQQMEKVL_					0	0	0		ENST00000477551.5_3_3:150285995-150286070:+|nuORF	ENST00000477551.5_3_3:150285995-150286070:+|nuORF	ENST00000477551.5_3_3:150285995-150286070:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3022668567501	2	545.302267	1088.58998	1.7256	0.00094098	0.63958	0.00034876	2.3652	0.0012897	545.3033349936203	22.887	0.14471	22.887	22.814	22.959	0	1227	55	0.88180584	0.033132493	0.88180584	357.6684	0	13.438843						121	7	3	NaN	NaN	NaN	0.39244	1	12340	12340		14.042	0	1	13320			26662	7184	15360	15796	21262	21262					0.049229389141146385
TLQYTYDGEQM	11	Unmodified	_TLQYTYDGEQM_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.19570385736665	3	450.195704	1347.56528	0.7877	0.00035462	5.0822	0.002288	5.8699	0.0026426	450.19765470860875	24.526	0.024143	24.526	24.502	24.526	0	1413	46	0.7673241	0.027788818	0.7673241	465.72372	0	16.866272						48	2	2	NaN	NaN	NaN	0.75907	1	19507	19507		1.384	0	1	6814.3	+		26663	9850	15361	15797	21263	21263					-0.094597857499366
TLRFWNVF	8	Unmodified	_TLRFWNVF_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000588084.1_1_19:3534295-3534831:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7927266257001	2	541.792727	1081.5709	1.0921	0.0005917	4.9214	0.0026664	6.0135	0.0032581	541.7957126933582	27.542	0.12067	27.533	27.484	27.605	-0.0095501	1236	70	0.876284	0.042324543	0.8747646	355.45752	0	17.16861						141	6	3	NaN	NaN	NaN	0.69898	1	11746	11746		19.118	3.9429	1	16412			26664	1527	15362	15798	21264	21264					0.03337770405369156
TLRGCSKVLLR	11	Unmodified	_TLRGCSKVLLR_					0	0	0		nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH;ENSG00000180902|ENST00000321264|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	nc|ENSG00000180902|Q8N465-2|D2HGDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.9201800342667	3	415.92018	1244.73871	1.2969	0.00053941	-4.8067	-0.0019992	-3.5097	-0.0014598	416.2520416360747	20.67	0.072237	20.67	20.622	20.694	0	1494	46	0.7172283	0.027879357	0.7172283	435.68268	0	16.935425						66	4	2	NaN	NaN	NaN	0.77466	1	17639	17639		0.33451	0	1	6011.3			26665	5208	15363	15799	21265	21265					0.12613089607680195
TLSDIFLL	8	Unmodified	_TLSDIFLL_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.5291609067	1	921.529161	920.521884	1.386	0.0012772	0.57687	0.0005316	1.9628	0.0018088	921.5302924134186	35.964	0.12048	35.964	35.94	36.061	0	267	49	1.4606913	0.028449416	1.4606913	296.91455	0	5.782898						92	6	2	NaN	NaN	NaN	0.057516	1	6421	6421		76.264	10.592	1	9411.5			26666	3741	15364	15800	21266	21266					0.0584443732575437
TLSDIFLLF	9	Unmodified	_TLSDIFLLF_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5975748228998	1	1068.59757	1067.5903	0.26589	0.00028413	1.5513	0.0016577	1.8172	0.0019418	1068.5994329042894	43.176	0.16771	43.186	43.138	43.306	0.010418	75	58	1.5741152	0.03355682	1.5725957	319.31998	0	6.807251						167	8	2	NaN	NaN	NaN	0.023074	1	11190	11190		68.108	6.1317	1	18875			26667	3741	15365	15801	21267	21267					0.05920681905604397
TLSDSDEPI	9	Unmodified	_TLSDSDEPI_					0	0	0		ENST00000330753.5_1_14:85996623-86087491:+|nuORF;ENST00000554746.1_1_14:85996623-86087517:+|nuORF	ENST00000330753.5_1_14:85996623-86087491:+|nuORF	ENST00000330753.5_1_14:85996623-86087491:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4469474198	1	976.446947	975.439671	2.5084	0.0024493	0.90336	0.00088208	3.4118	0.0033314	976.447341511727	18.34	0.04801	18.34	18.316	18.364	0	318	61	1.4304334	0.035626054	1.4304334	290.5227	0	7.2356873						75	3	2	NaN	NaN	NaN	0.47587	1	7753	7753		10.605	0	1	4508.8			26668	6505	15366	15802	21268	21268					-0.049031295438453526
TLSHGGIA	8	Unmodified	_TLSHGGIA_					0	0	0		ENST00000498731.5_1_3:181459494-181459650:+|nuORF	ENST00000498731.5_1_3:181459494-181459650:+|nuORF	ENST00000498731.5_1_3:181459494-181459650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.4046290951001	1	755.404629	754.397353	1.675	0.0012653	-8.1652	-0.0061681	-6.4902	-0.0049028	755.3983667984604	35.482	0.48234	35.482	35.434	35.916	0	561	235	1.2855089	0.14043093	1.2855089	262.15158	0	28.637817						1902	21	5	NaN	NaN	NaN	0.50567	1	4146	4146		30.791	0	1	1776300			26669	7305	15367	15803	21269	21269					0.010329846290915157
TLSHGGIA	8	Unmodified	_TLSHGGIA_					0	0	0		ENST00000498731.5_1_3:181459494-181459650:+|nuORF	ENST00000498731.5_1_3:181459494-181459650:+|nuORF	ENST00000498731.5_1_3:181459494-181459650:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.4046290951001	1	755.404629	754.397353	1.8993	0.0014347	-8.2725	-0.0062491	-6.3732	-0.0048144	755.3987465293582	35.48	0.48214	35.481	35.385	35.867	0.00052643	561	226	1.2855089	0.13499355	1.2839894	262.15158	0	27.528992						1799	21	5	NaN	NaN	NaN	0.50567	1	4069	4069		30.791	0	1	1711600			26670	7305	15367	15803	21270	21270					0.010329846290915157
TLSHTPSI	8	Unmodified	_TLSHTPSI_					0	0	0		ENST00000268261.8_1_16:8942748-8942910:+|nuORF	ENST00000268261.8_1_16:8942748-8942910:+|nuORF	ENST00000268261.8_1_16:8942748-8942910:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.23216753135006	2	428.232168	854.449782	1.5008	0.00064268	1.3331	0.0005709	2.8339	0.0012136	428.2327808766989	24.26	0.072412	24.248	24.224	24.296	-0.012749	1407	160	0.77102906	0.098080814	0.7695096	313.80505	0	39.918427						400	4	4	NaN	NaN	NaN	0.30832	1	5320	5320		41.46	5.4237	1	313180			26671	6334	15368	15804	21271	21271					0.016735229720552525
TLSLILVVI	9	Unmodified	_TLSLILVVI_					0	0	0		nc|ENSG00000187266|P19235-3|EPOR;ENSG00000187266|ENST00000222139|EPOR	nc|ENSG00000187266|P19235-3|EPOR	nc|ENSG00000187266|P19235-3|EPOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.6546957713002	1	970.654696	969.647419	1.5866	0.00154	0.48676	0.00047248	2.0733	0.0020125	970.6567042138544	35.892	0.048279	35.892	35.868	35.916	0	180	43	1.5121819	0.024816751	1.5121819	307.1515	0	5.0407104						64	3	2	NaN	NaN	NaN	0.36492	1	7602	7602		15.175	0	1	4089.9			26672	5502	15369	15805	21272	21272					0.161381491820066
TLSLILVVI	9	Unmodified						0	0	0		nc|ENSG00000187266|P19235-3|EPOR;ENSG00000187266|ENST00000222139|EPOR	nc|ENSG00000187266|P19235-3|EPOR	nc|ENSG00000187266|P19235-3|EPOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	970.654696	969.647419	1.5024	0.0014583	-0.84767	-0.0008228	0.65469	0.00063547	970.6524975409751	35.89	0.072239	35.891	35.867	35.94	0.0011024	180	43	1.5121819	0.024819255	1.5106624	307.1515		5.04126	-0.00024239	-0.00070956	-0.00075972	NaN	15.175	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4384.1			26673	5502	15369	15805							0.161381491820066
TLSNNTRVLM	10	Unmodified	_TLSNNTRVLM_					0	0	0			REV__ENST00000334351.7_1_1:24287951-24288053:+|nuORF	REV__ENST00000334351.7_1_1:24287951-24288053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8082476916501	2	574.808248	1147.60194	1.8096	0.0010402	-2.1216	-0.0012195	-0.31205	-0.00017937	575.3091801277635	54.524	0.04818	54.524	54.5	54.548	0	1209	55	0.892844	0.03311813	0.892844	361.91275	0	13.424377						63	3	2	NaN	NaN	NaN	0.77318	1	14726	14726		2.1763	1.1043	1	3650.1	+		26674	11756	15370	15806	21273	21273					0.03404555657311903
TLSSVGTV	8	Unmodified	_TLSSVGTV_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.4196104573002	1	763.41961	762.412334	1.3442	0.0010262	4.2112	0.0032149	5.5553	0.0042411	763.4232939203697	32.297	0.07243	32.297	32.273	32.345	0	513	40	1.3142352	0.02332151	1.3142352	267.95932	0	4.755005						62	4	2	NaN	NaN	NaN	0.84727	1	4246	4246		1.2418	0	1	4906.7	+		26675	9841	15371	15807	21274	21274					0.02162431706449297
TLSSVGTV	8	Unmodified						0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	763.41961	762.412334	1.3442	0.0010262	4.2112	0.0032149	5.5553	0.0042411	763.4232939203697	32.297	0.07243	32.297	32.273	32.345	0	513	40	1.3142352	0.02332151	1.3142352	267.95932		4.755005	0.0024173	-0.00020406	-0.00013716	NaN	1.2418	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4906.7	+		26676	9841	15371	15807							0.02162431706449297
TLSSVGTV	8	Unmodified						0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	763.41961	762.412334	1.5728	0.0012007	4.8447	0.0036985	6.4175	0.0048993	763.4222012138848	32.296	0.072422	32.292	32.244	32.316	-0.0037613	510	40	1.316029	0.023318887	1.3145095	268.32504		4.7545166	-0.0024173	0.00027957	0.00013716	NaN	1.2418	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4102.5	+		26677	9841	15371	15807							0.02162431706449297
TLSTTKYLWL	10	Unmodified	_TLSTTKYLWL_					0	0	0		ENST00000423427.1_2_3:173114104-173322101:+|nuORF	ENST00000423427.1_2_3:173114104-173322101:+|nuORF	ENST00000423427.1_2_3:173114104-173322101:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.232418123	3	409.232418	1224.67542	1.0249	0.00041942	-9.1782	-0.003756	-8.1533	-0.0033366	409.22876855318157	20.935	0.096315	20.921	20.873	20.969	-0.014088	1476	34	0.72837335	0.020427108	0.7268539	442.5322	0	12.410767						70	5	2	NaN	NaN	NaN	0.47445	1	16419	16419		16.659	0	1	6511.9			26678	6927	15372	15808	21275	21275					0.07207427371417907
TLTSSAAL	8	Unmodified	_TLTSSAAL_					0	0	0			REV__nc|ENSG00000068305|Q02078-8|MEF2A	REV__nc|ENSG00000068305|Q02078-8|MEF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	763.4196104573001	1	763.41961	762.412334	1.5728	0.0012007	4.8447	0.0036985	6.4175	0.0048993	763.4222012138848	32.296	0.072422	32.292	32.244	32.316	-0.0037613	510	40	1.316029	0.023318887	1.3145095	268.32504	0	4.7545166						58	4	2	NaN	NaN	NaN	0.84727	1	4173	4173		1.2418	0	1	4102.5	+		26679	8552	15373	15809	21276	21276					0.021624317064379284
TLVATKDSESL	11	Unmodified	_TLVATKDSESL_					0	0	0			REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.3113430991	2	582.311343	1162.60813	2.6046	0.0015167	-11.18	-0.0065105	-8.5758	-0.0049938	582.3048042608131	18.292	0.14399	18.292	18.268	18.412	0	1233	91	0.87812483	0.05518502	0.87812483	355.89185	0	22.365692						317	7	4	NaN	NaN	NaN	0.50669	1	15235	15235		18.233	2.7708	1	80882	+		26680	9965	15374	15810	21277	21277					0.03333352369804743
TLVATKDSESL	11	Unmodified						0	0	0			REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	582.311343	1162.60813	2.6046	0.0015167	-11.18	-0.0065105	-8.5758	-0.0049938	582.3048042608131	18.292	0.14399	18.292	18.268	18.412	0	1233	91	0.87812483	0.05518502	0.87812483	355.89185		22.365692	-0.015583	0.00021125	-0.0010808	NaN	18.233	317	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80882	+		26681	9965	15374	15810							0.03333352369804743
TLVATKDSESL	11	Unmodified						0	0	0			REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	582.311343	1162.60813	2.3303	0.0013569	-11.477	-0.0066833	-9.1469	-0.0053263	582.3045456694093	18.338	0.14411	18.324	18.276	18.42	-0.01395	1227	76	0.88180584	0.045994937	0.8802864	357.3837		18.641113	0.015583	-0.00013431	0.0010808	NaN	18.233	298	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83858	+		26682	9965	15374	15810							0.03333352369804743
TLVILFLNF	9	Unmodified	_TLVILFLNF_					0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.3286106055001	2	540.328611	1078.64267	-0.45031	-0.00024331	1.1565	0.00062489	0.70619	0.00038157	540.3299033081619	55.218	0.072227	55.217	55.193	55.266	-0.00061798	1215	37	0.8891654	0.022073984	0.88764596	360.69507	0	8.954437						134	4	4	NaN	NaN	NaN	0.62619	1	11628	11628		4.4131	0	1	13220			26683	5747	15375	15811	21278	21278					0.1064926503922834
TLVILFLNF	9	Unmodified						0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.328611	1078.64267	1.7046	0.00092102	-0.99222	-0.00053612	0.71235	0.0003849	540.3290033449938	55.22	0.09626	55.22	55.172	55.268	0	1218	37	0.8873258	0.022076428	0.8873258	359.94885		8.955383	0.0013857	-0.0010842	-0.00016008	NaN	4.4131	143	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14253			26684	5747	15375	15811							0.1064926503922834
TLVKHQIT	8	Unmodified	_TLVKHQIT_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.5621923696	1	939.562192	938.554916	0.12881	0.00012103	-0.3202	-0.00030085	-0.19139	-0.00017982	939.561483620412	47.227	0.23959	47.234	47.138	47.378	0.007412	216	64	1.4908947	0.037282348	1.4893752	302.96817	0	7.576233						349	11	3	NaN	NaN	NaN	0.80692	1	6658	6658		8.2903	0	1	41746			26685	2656	15376	15812	21279	21279					0.08318064168463479
TLVQPCAP	8	Unmodified	_TLVQPCAP_					0	0	0			REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.4284010046	1	828.428401	827.421125	1.5036	0.0012456	0.78163	0.00064752	2.2853	0.0018932	828.4290275392308	32.78	0.19306	32.78	32.732	32.925	0	471	73	1.3393306	0.04298854	1.3393306	272.6965	0	8.752747						275	9	3	NaN	NaN	NaN	0.76633	1	5114	5114		13.737	3.1321	1	32944	+		26686	11911	15377	15813	21280	21280					0.000510820712520399
TLVQPCAP	8	Unmodified	_TLVQPCAP_					0	0	0			REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.4284010046	1	828.428401	827.421125	0.99318	0.00082278	1.0869	0.0009004	2.0801	0.0017232	828.4294783550026	32.779	0.21714	32.776	32.727	32.945	-0.0031052	468	67	1.3411216	0.03940618	1.3396021	273.0612	0	8.023346						297	10	3	NaN	NaN	NaN	0.80071	1	4994	4994		9.1232	0.16122	1	33175	+		26687	11911	15377	15813	21281	21281					0.000510820712520399
TLVQPCAP	8	Unmodified						0	0	0			REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	828.428401	827.421125	1.5036	0.0012456	0.78163	0.00064752	2.2853	0.0018932	828.4290275392308	32.78	0.19306	32.78	32.732	32.925	0	471	73	1.3393306	0.04298854	1.3393306	272.6965		8.752747	0.0020824	-9.0896E-05	-0.00013583	NaN	13.737	275	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32944	+		26688	11911	15377	15813							0.000510820712520399
TLVQPCAP	8	Unmodified						0	0	0			REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	REV__ENST00000372409.7_1_20:44576400-44576574:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	828.428401	827.421125	0.99318	0.00082278	1.0869	0.0009004	2.0801	0.0017232	828.4294783550026	32.779	0.21714	32.776	32.727	32.945	-0.0031052	468	67	1.3411216	0.03940618	1.3396021	273.0612		8.023346	-0.0020824	0.00016198	0.00013583	NaN	13.737	297	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33175	+		26689	11911	15377	15813							0.000510820712520399
TLVSDAYSSKH	11	Unmodified	_TLVSDAYSSKH_					0	0	0			REV__ENSG00000171617|ENST00000302351|ENC1	REV__ENSG00000171617|ENST00000302351|ENC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.30130972905	2	604.30131	1206.58807	1.6743	0.0010118	0.79847	0.00048252	2.4728	0.0014943	604.3021831446042	16.658	0.11989	16.645	16.597	16.717	-0.013294	1200	37	0.89836043	0.022059679	0.896841	363.93735	0	8.936676						87	6	3	NaN	NaN	NaN	0.74155	1	15982	15982		4.7291	0	1	5551.5	+		26690	10628	15378	15814	21282	21282					-0.006963985701531783
TLVSDAYSSKH	11	Unmodified						0	0	0			REV__ENSG00000171617|ENST00000302351|ENC1	REV__ENSG00000171617|ENST00000302351|ENC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	604.30131	1206.58807	1.621	0.00097959	0.78494	0.00047434	2.406	0.0014539	604.3025347348481	16.662	0.071972	16.662	16.614	16.686	0	1200	31	0.89836043	0.018385053	0.89836043	363.93735		7.4480286	0.008194	-7.8618E-06	0.00075972	NaN	4.7291	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3938.2	+		26691	10628	15378	15814							-0.006963985701531783
TLVSDAYSSKH	11	Unmodified						0	0	0			REV__ENSG00000171617|ENST00000302351|ENC1	REV__ENSG00000171617|ENST00000302351|ENC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.30131	1206.58807	1.6743	0.0010118	0.79847	0.00048252	2.4728	0.0014943	604.3021831446042	16.658	0.11989	16.645	16.597	16.717	-0.013294	1200	37	0.89836043	0.022059679	0.896841	363.93735		8.936676	-0.008194	8.4922E-06	-0.00075972	NaN	4.7291	87	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5551.5	+		26692	10628	15378	15814							-0.006963985701531783
TLVVKYSRP	9	Unmodified	_TLVVKYSRP_					0	0	0			REV__ENSG00000234719|ENST00000399147|NPIPB2	REV__ENSG00000234719|ENST00000399147|NPIPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.8189413762001	2	531.818941	1061.62333	1.8882	0.0010042	-4.7202	-0.0025103	-2.8319	-0.0015061	531.8163761994255	30.342	0.24131	30.342	30.246	30.487	0	1218	148	0.8873258	0.0900529	0.8873258	360.0216	0	36.53784						662	11	3	NaN	NaN	NaN	0.63698	1	11202	11202		3.9685	0	1	83637	+		26693	11322	15379	15815	21283	21283					0.09498308748334239
TLVVKYSRP	9	Unmodified						0	0	0			REV__ENSG00000234719|ENST00000399147|NPIPB2	REV__ENSG00000234719|ENST00000399147|NPIPB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.818941	1061.62333	1.8882	0.0010042	-4.7202	-0.0025103	-2.8319	-0.0015061	531.8163761994255	30.342	0.24131	30.342	30.246	30.487	0	1218	148	0.8873258	0.0900529	0.8873258	360.0216		36.53784	0.11228	-0.00080756	0.0025996	NaN	3.9685	662	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83637	+		26694	11322	15379	15815							0.09498308748334239
TLVVKYSRP	9	Unmodified						0	0	0			REV__ENSG00000234719|ENST00000399147|NPIPB2	REV__ENSG00000234719|ENST00000399147|NPIPB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	531.818941	1061.62333	0.67687	0.00035997	-3.1692	-0.0016855	-2.4924	-0.0013255	531.8174143771956	30.124	0.2172	30.118	30.021	30.238	-0.0064106	1224	154	0.883646	0.093698144	0.88212657	358.52856		38.016907	-0.11228	0.00084209	-0.0025996	NaN	3.9685	528	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84964	+		26695	11322	15379	15815							0.09498308748334239
TLYLTLQTL	9	Unmodified	_TLYLTLQTL_					0	0	0			REV__nc|ENSG00000103599|Q86VS3-4|IQCH	REV__nc|ENSG00000103599|Q86VS3-4|IQCH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.6190385465	1	1065.61904	1064.61176	1.8311	0.0019513	-0.019433	-2.0708E-05	1.8117	0.0019306	1065.6184901511801	30.318	0.072395	30.318	30.294	30.366	0	60	64	1.582944	0.037085176	1.582944	321.12244	0	7.5232544						112	4	3	NaN	NaN	NaN	0.3389	1	11348	11348		16.417	4.8682	1	9248.8	+		26696	8923	15380	15816	21284	21284					0.08204066934331422
TLYLTLQTL	9	Unmodified						0	0	0			REV__nc|ENSG00000103599|Q86VS3-4|IQCH	REV__nc|ENSG00000103599|Q86VS3-4|IQCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1065.61904	1064.61176	1.8311	0.0019513	-0.019433	-2.0708E-05	1.8117	0.0019306	1065.6184901511801	30.318	0.072395	30.318	30.294	30.366	0	60	64	1.582944	0.037085176	1.582944	321.12244		7.5232544	0.0037026	8.3973E-05	0.0016424	NaN	16.417	112	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9248.8	+		26697	8923	15380	15816							0.08204066934331422
TLYLTLQTL	9	Unmodified						0	0	0			REV__nc|ENSG00000103599|Q86VS3-4|IQCH	REV__nc|ENSG00000103599|Q86VS3-4|IQCH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1065.61904	1064.61176	1.1108	0.0011837	-0.16637	-0.00017729	0.94442	0.0010064	1065.6182968746436	30.317	0.048241	30.311	30.287	30.335	-0.0064087	63	55	1.5811787	0.031785727	1.5796592	320.7643		6.448181	-0.0037026	-7.2607E-05	-0.0016424	NaN	16.417	74	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7672	+		26698	8923	15380	15816							0.08204066934331422
TMGPGSSC	8	Unmodified	_TMGPGSSC_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.27493683	1	739.274937	738.26766	1.3801	0.0010203	5.3898	0.0039846	6.77	0.0050049	739.2791228775006	34.71	0.24123	34.71	34.614	34.855	0	570	142	1.2801172	0.0846138	1.2801172	261.1538	0	17.261887						438	11	3	NaN	NaN	NaN	0.8439	1	3887	3887		3.1533	1.7138	1	42836	+		26699	10414	15381	15817	21285	21285					-0.11194276036712836
TMGPGSSC	8	Unmodified						0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.274937	738.26766	1.3801	0.0010203	5.3898	0.0039846	6.77	0.0050049	739.2791228775006	34.71	0.24123	34.71	34.614	34.855	0	570	142	1.2801172	0.0846138	1.2801172	261.1538		17.261887	0.013088	0.00026107	-0.00013899	NaN	3.1533	438	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42836	+		26700	10414	15381	15817							-0.11194276036712836
TMGSVIVLS	9	Unmodified	_TMGSVIVLS_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4964805698002	1	906.496481	905.489204	1.6537	0.0014991	0.022752	2.0624E-05	1.6764	0.0015197	906.4966748189884	27.253	0.16895	27.253	27.229	27.398	0	330	64	1.4233059	0.037429094	1.4233059	289.386	0	7.610077						208	8	4	NaN	NaN	NaN	0.094712	1	6176	6176		36.586	0	1	27783	+		26701	9580	15382	15818	21286	21286					0.03267906931262132
TMILDAVVI	9	Unmodified	_TMILDAVVI_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5590808266	1	974.559081	973.551804	1.1057	0.0010775	-4.6079	-0.0044906	-3.5022	-0.0034131	974.5535262798335	33.262	0.096527	33.262	33.238	33.335	0	210	67	1.4944444	0.03905976	1.4944444	303.53165	0	7.9332886						125	5	3	NaN	NaN	NaN	0.12945	1	7708	7708		31.561	0	1	9337.6	+		26702	9723	15383	15819	21287	21287					0.06397052999443531
TMILDAVVI	9	Unmodified						0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	974.559081	973.551804	1.1057	0.0010775	-4.6079	-0.0044906	-3.5022	-0.0034131	974.5535262798335	33.262	0.096527	33.262	33.238	33.335	0	210	67	1.4944444	0.03905976	1.4944444	303.53165		7.9332886	0.0018924	0.00039754	-0.0010148	NaN	31.561	125	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9337.6	+		26703	9723	15383	15819							0.06397052999443531
TMILDAVVI	9	Unmodified						0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.559081	973.551804	1.1353	0.0011064	-5.307	-0.005172	-4.1717	-0.0040656	974.5547176812593	33.261	0.096546	33.259	33.21	33.307	-0.0024757	204	55	1.4979934	0.031944394	1.496474	304.25247		6.4881287	-0.0018924	-0.00028385	0.0010148	NaN	31.561	117	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8861.2	+		26704	9723	15383	15819							0.06397052999443531
TMIQDTQWVI	10	Unmodified	_TMIQDTQWVI_					0	0	0		ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000512876.5_1_5:138629414-138653336:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.20939617526665	3	412.209396	1233.60636	2.1449	0.00088416	-9.5435	-0.0039339	-7.3986	-0.0030498	412.20610041963585	16.754	0.047869	16.741	16.693	16.741	-0.013294	1494	43	0.7172283	0.026016474	0.71570885	435.72577	0	15.805359						51	3	2	NaN	NaN	NaN	0.66796	1	16640	16640		10.244	1.3246	1	3491.4			26705	7362	15384	15820	21288	21288					-0.0010997991980730148
TMLGKFYHF	9	Unmodified	_TMLGKFYHF_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.2864198273	2	572.28642	1142.55829	1.7596	0.001007	-5.5113	-0.0031541	-3.7517	-0.0021471	572.7846019351234	22.573	0.072405	22.573	22.573	22.645	0	1167	49	0.91857195	0.029384315	0.91857195	372.36105	0	11.91153						104	4	3	NaN	NaN	NaN	0.14787	1	14542	14542		28.896	13.433	1	11593			26706	4271	15385	15821	21289	21289					-0.007290090491778756
TMLGKFYHF	9	Unmodified						0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.28642	1142.55829	1.0577	0.00060533	-2.2533	-0.0012895	-1.1956	-0.00068421	572.2859375523458	22.693	0.19294	22.68	22.583	22.776	-0.01354	1173	76	0.91489893	0.04594034	0.9133795	370.8721		18.622803	0.053252	0.0011933	-0.0025962	NaN	28.896	238	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22436			26707	4271	15385	15821							-0.007290090491778756
TMLIYFNDV	9	Unmodified	_TMLIYFNDV_					0	0	0			REV__ENSG00000177839|ENST00000316105|PCDHB9	REV__ENSG00000177839|ENST00000316105|PCDHB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1115.5441590439	1	1115.54416	1114.53688	0.67306	0.00075083	6.6788	0.0074505	7.3519	0.0082013	1116.5533859313912	31.886	0.16889	31.881	31.857	32.026	-0.0044155	66	94	1.579413	0.054773927	1.5778936	320.22238	0	11.105286						342	8	3	NaN	NaN	NaN	0.14301	1	13074	13074		29.598	13.182	1	46236	+		26708	10775	15386	15822	21290	21290					-0.01580438868541023
TMMFTFHKF	9	Unmodified	_TMMFTFHKF_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.1892789584666	3	397.189279	1188.54601	1.6758	0.00066562	-2.0937	-0.00083159	-0.41787	-0.00016597	397.1888221285455	23.079	0.12051	23.079	23.055	23.176	0	1461	43	0.7376554	0.025982678	0.7376554	448.32315	0	15.791412						146	6	3	NaN	NaN	NaN	0.38313	1	16104	16104		17.198	9.5158	1	22548			26709	5729	15387	15823	21291	21291					-0.04072368783886304
TMMFTFHKF	9	Unmodified	_TMMFTFHKF_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.2802802044	2	595.28028	1188.54601	1.7524	0.0010431	-2.0857	-0.0012416	-0.33337	-0.00019845	595.2792892663014	23.079	0.16858	23.079	23.007	23.176	0	1155	79	0.92591566	0.04775989	0.92591566	375.16473	0	19.35147						264	8	3	NaN	NaN	NaN	0.064504	1	16105	16105		40.957	20.444	1	41482			26710	5729	15387	15823	21292	21292					-0.04072368783886304
TMMFTFHKF	9	Unmodified	_TMMFTFHKF_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.1892789584666	3	397.189279	1188.54601	1.6052	0.00063758	-2.381	-0.00094571	-0.77579	-0.00030814	397.1880791211743	23.223	0.16891	23.21	23.138	23.307	-0.013294	1458	40	0.7395112	0.024125457	0.73799175	449.45105	0	14.662659						182	8	3	NaN	NaN	NaN	0.14787	1	15492	15492		20.688	12.884	1	19842			26711	5729	15387	15823	21293	21293					-0.04072368783886304
TMMFTFHKF	9	Unmodified	_TMMFTFHKF_					0	0	0		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2802802044	2	595.28028	1188.54601	1.3349	0.00079462	-1.2571	-0.00074831	0.077795	4.631E-05	595.2801859121121	23.223	0.2413	23.21	23.138	23.379	-0.013294	1152	73	0.92775106	0.044076502	0.9262317	375.90842	0	17.85904						321	11	4	NaN	NaN	NaN	0.084037	1	15493	15493		38.131	25.128	1	39979			26712	5729	15387	15823	21294	21294					-0.04072368783886304
TMQSKKGYY	9	Unmodified	_TMQSKKGYY_					0	0	0		nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.18306997443335	3	369.18307	1104.52738	1.4215	0.0005248	0.86983	0.00032113	2.2913	0.00084592	369.18313362563754	13.108	0.12007	13.108	13.084	13.204	0	1467	31	0.7339432	0.018565059	0.7339432	446.4554	0	11.293091						75	6	2	NaN	NaN	NaN	0.62619	1	13034	13034		2.3381	0	1	5479.1			26713	7964	15388	15824	21295	21295					-0.020702071540654288
TMSFLGGFFGP	11	Unmodified	_TMSFLGGFFGP_					0	0	0		ENST00000467852.1_1_10:70884027-70917811:+|nuORF	ENST00000467852.1_1_10:70884027-70917811:+|nuORF	ENST00000467852.1_1_10:70884027-70917811:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7758849307501	2	580.775885	1159.53722	2.0565	0.0011944	-7.6356	-0.0044346	-5.5791	-0.0032402	580.7715632174908	23.706	0.26505	23.706	23.634	23.899	0	1209	76	0.892844	0.045984983	0.892844	361.86853	0	18.637634						433	12	3	NaN	NaN	NaN	0.44477	1	15117	15117		20.449	2.6497	1	75787			26714	7125	15389	15825	21296	21296					-0.03617019148691725
TMSFLGGFFGP	11	Unmodified						0	0	0		ENST00000467852.1_1_10:70884027-70917811:+|nuORF	ENST00000467852.1_1_10:70884027-70917811:+|nuORF	ENST00000467852.1_1_10:70884027-70917811:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	580.775885	1159.53722	1.9303	0.001121	-4.7211	-0.0027419	-2.7908	-0.0016208	580.7751001682462	23.416	0.12068	23.403	23.403	23.524	-0.013294	1206	70	0.894683	0.042310774	0.89316356	362.61386		17.148499	-0.15151	0.0030419	0.00015978	NaN	20.449	170	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19244			26715	7125	15389	15825							-0.03617019148691725
TMSSRYCILS	10	Unmodified	_TMSSRYCILS_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.77555896725	2	580.775559	1159.53657	1.5216	0.00088373	-6.7945	-0.0039461	-5.2728	-0.0030623	580.7712219743387	22.669	0.21703	22.655	22.583	22.8	-0.01354	1182	70	0.9093879	0.042278767	0.90786844	368.57376	0	17.135529						306	10	3	NaN	NaN	NaN	0.27719	1	14609	14609		28.896	2.7806	1	69029	+		26716	11097	15390	15826	21297	21297					-0.03682181860062883
TMTTDAPVI	9	Unmodified	_TMTTDAPVI_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4706597498001	1	948.47066	947.463383	2.1888	0.002076	-3.9346	-0.0037318	-1.7457	-0.0016558	948.4663738473174	25.949	0.072386	25.938	25.914	25.986	-0.0116	282	103	1.4517976	0.060551286	1.4502782	294.98306	0	12.303101						151	4	3	NaN	NaN	NaN	0.36492	1	6880	6880		15.175	1.1338	1	12963	+		26717	10076	15391	15827	21298	21298					-0.012449873110199405
TNAEDLGPI	9	Unmodified	_TNAEDLGPI_					0	0	0			REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4574525265999	1	929.457453	928.450176	1.4754	0.0013713	-2.9568	-0.0027482	-1.4814	-0.0013769	929.454630759115	22.814	0.096287	22.8	22.752	22.848	-0.01354	363	40	1.4036897	0.023195028	1.4021703	285.29196	0	4.7142944						72	5	2	NaN	NaN	NaN	0.41766	1	6424	6424		13.003	0	1	5863.4	+		26718	9591	15392	15828	21299	21299					-0.016911020987663505
TNAEDLGPI	9	Unmodified						0	0	0			REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	929.457453	928.450176	2.1826	0.0020286	-6.8175	-0.0063366	-4.635	-0.004308	929.4550448545607	22.814	0.072298	22.814	22.766	22.838	0	363	70	1.4036897	0.041020036	1.4036897	285.292		8.337097	0.0070886	-0.0024094	0.00075972	NaN	13.003	103	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8243.3	+		26719	9591	15392	15828							-0.016911020987663505
TNAEDLGPI	9	Unmodified						0	0	0			REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	REV__ENST00000519868.1_1_5:169508643-169509859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	929.457453	928.450176	1.4754	0.0013713	-2.9568	-0.0027482	-1.4814	-0.0013769	929.454630759115	22.814	0.096287	22.8	22.752	22.848	-0.01354	363	40	1.4036897	0.023195028	1.4021703	285.29196		4.7142944	-0.0070886	0.001179	-0.00075972	NaN	13.003	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5863.4	+		26720	9591	15392	15828							-0.016911020987663505
TNEPSYYIF	9	Unmodified	_TNEPSYYIF_					0	0	0			REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.5149674054999	1	1133.51497	1132.50769	2.3013	0.0026086	0.53551	0.00060701	2.8368	0.0032156	1133.5144848984826	28.508	0.28958	28.508	28.388	28.677	0	90	94	1.5652816	0.05478549	1.5652816	317.29565	0	11.105469						442	13	3	NaN	NaN	NaN	0.16939	1	14168	14168		27.296	7.9598	1	37437	+		26721	9059	15393	15829	21300	21300					-0.05326259893195129
TNEPSYYIF	9	Unmodified	_TNEPSYYIF_					0	0	0			REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5149674054999	1	1133.51497	1132.50769	0.92455	0.001048	0.47671	0.00054035	1.4013	0.0015883	1133.51460014042	28.507	0.21714	28.499	28.451	28.668	-0.0083485	87	88	1.5670487	0.05124557	1.5655292	317.65387	0	10.387909						352	10	3	NaN	NaN	NaN	0.2961	1	13718	13718		19.164	0	1	31875	+		26722	9059	15393	15829	21301	21301					-0.05326259893195129
TNEPSYYIF	9	Unmodified						0	0	0			REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1133.51497	1132.50769	2.3013	0.0026086	0.53551	0.00060701	2.8368	0.0032156	1133.5144848984826	28.508	0.28958	28.508	28.388	28.677	0	90	94	1.5652816	0.05478549	1.5652816	317.29565		11.105469	0.0045259	2.874E-05	-0.00012382	NaN	27.296	442	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37437	+		26723	9059	15393	15829							-0.05326259893195129
TNEPSYYIF	9	Unmodified						0	0	0			REV__ENSG00000109452|ENST00000262992|INPP4B	REV__ENSG00000109452|ENST00000262992|INPP4B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1133.51497	1132.50769	0.92455	0.001048	0.47671	0.00054035	1.4013	0.0015883	1133.51460014042	28.507	0.21714	28.499	28.451	28.668	-0.0083485	87	88	1.5670487	0.05124557	1.5655292	317.65387		10.387909	-0.0045259	-3.7918E-05	0.00012382	NaN	27.296	352	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31875	+		26724	9059	15393	15829							-0.05326259893195129
TNEVTFLV	8	Unmodified	_TNEVTFLV_					0	0	0			REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.74765042005004	2	461.74765	921.480748	0.62242	0.0002874	-0.43861	-0.00020253	0.1838	8.487E-05	461.747042409586	20.549	0.16861	20.535	20.487	20.656	-0.014141	1320	43	0.824661	0.025853395	0.8231416	335.24698	0	10.510132						138	8	2	NaN	NaN	NaN	0.7718	1	6316	6316		13.003	0.95414	1	22772	+		26725	8974	15394	15830	21302	21302					0.016866762862946416
TNGALCLE	8	Unmodified	_TNGALCLE_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.69710329350005	2	410.697103	819.379654	1.0372	0.00042599	-0.10811	-4.4399E-05	0.92914	0.0003816	410.6970976418436	20.525	0.14447	20.511	20.487	20.632	-0.014141	1425	46	0.7599118	0.027800858	0.75839233	309.4894	0	11.322449						132	7	2	NaN	NaN	NaN	0.78264	1	4899	4899		11.548	0	1	15464			26726	3231	15395	15831	21303	21303					-0.03726098688059665
TNGALCLE	8	Unmodified						0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	410.697103	819.379654	1.0995	0.00045155	-0.265	-0.00010883	0.83448	0.00034272	410.6969821854525	20.549	0.16841	20.549	20.477	20.646	0	1425	43	0.7599118	0.025946021	0.7599118	309.4894		10.567047	0.01898	-4.7852E-05	0.00075972	NaN	11.548	110	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12360			26727	3231	15395	15831							-0.03726098688059665
TNGIQEPEI	9	Unmodified	_TNGIQEPEI_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4945663144	1	1000.49457	999.48729	2.0509	0.0020519	-0.65257	-0.0006529	1.3983	0.001399	1000.4954358951454	20.525	0.048101	20.511	20.487	20.535	-0.014141	297	40	1.4428991	0.023143291	1.4413797	292.95627	0	4.6988525						57	3	2	NaN	NaN	NaN	0.12328	1	8380	8380		32.453	0	1	3783.7	+		26728	8401	15396	15832	21304	21304					-0.012474305529963203
TNGIQEPEI	9	Unmodified						0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.49457	999.48729	1.736	0.0017368	-2.0108	-0.0020118	-0.27487	-0.00027501	1000.4918561806898	20.501	0.048025	20.501	20.501	20.549	0	303	37	1.4393384	0.021364212	1.4393384	292.23334		4.3376465	-0.0050326	-0.00071351	-0.0010206	NaN	32.453	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3317.1	+		26729	8401	15396	15832							-0.012474305529963203
TNGIQEPEI	9	Unmodified						0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.49457	999.48729	2.0509	0.0020519	-0.65257	-0.0006529	1.3983	0.001399	1000.4954358951454	20.525	0.048101	20.511	20.487	20.535	-0.014141	297	40	1.4428991	0.023143291	1.4413797	292.95627		4.6988525	0.0050326	0.00064541	0.0010206	NaN	32.453	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3783.7	+		26730	8401	15396	15832							-0.012474305529963203
TNLGTCYFLP	10	Unmodified	_TNLGTCYFLP_					0	0	0			REV__ENST00000368685.5_1_1:153634214-153634298:+|nuORF	REV__ENST00000368685.5_1_1:153634214-153634298:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.85132031673334	3	376.85132	1127.53213	1.3815	0.00052061	4.6772	0.0017626	6.0587	0.0022832	376.8531020459406	21.248	0.072258	21.248	21.2	21.272	0	1440	49	0.7506418	0.029678345	0.7506418	456.4985	0	18.048706						64	4	2	NaN	NaN	NaN	0.75966	1	13995	13995		1.6985	0	1	5474.2	+		26731	11873	15397	15833	21305	21305					-0.02653323011327302
TNLVTPPA	8	Unmodified	_TNLVTPPA_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4512449367	1	812.451245	811.443968	1.306	0.001061	-3.478	-0.0028257	-2.172	-0.0017646	812.4483240547354	37.795	0.072166	37.795	37.771	37.843	0	519	40	1.310647	0.023326516	1.310647	266.9422	0	4.750946						57	4	2	NaN	NaN	NaN	0.84512	1	4910	4910		2.4615	0	1	4098.4			26732	4803	15398	15834	21306	21306					0.030704244603725783
TNMQHCKCS	9	Unmodified	_TNMQHCKCS_					0	0	0		nc|nan|Q8WZ69|C11orf40	nc|nan|Q8WZ69|C11orf40	nc|nan|Q8WZ69|C11orf40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.209528952	2	526.209529	1050.4045	1.5891	0.00083621	-7.6985	-0.004051	-6.1094	-0.0032148	526.7072176839611	25.419	0.072351	25.407	25.358	25.431	-0.012011	1311	70	0.83019954	0.042443633	0.8286801	336.8894	0	17.223358						178	4	5	NaN	NaN	NaN	0.51576	1	10414	10414		8.962	0.67169	1	27289			26733	8071	15399	15835	21307	21307					-0.11868110148657252
TNNIAFNYIL	10	Unmodified	_TNNIAFNYIL_					0	0	0		USP34|p.K2827N|1|0.28|ENSG00000115464|chr2:61214261-61214261|C/G|missense_variant	USP34|p.K2827N|1|0.28|ENSG00000115464|chr2:61214261-61214261|C/G|missense_variant	USP34|p.K2827N|1|0.28|ENSG00000115464|chr2:61214261-61214261|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.8766343617667	3	394.876634	1181.60807	1.5703	0.00062006	-9.3856	-0.0037062	-7.8153	-0.0030861	394.87293597893455	18.94	0.14399	18.94	18.916	19.06	0	1476	46	0.72837335	0.027852178	0.72837335	442.71164	0	16.928772						141	7	2	NaN	NaN	NaN	0.62092	1	15882	15882		14.45	0	1	17612			26734	14016	15400	15836	21308	21308					0.024533971604796534
TNPDPPCL	8	Unmodified	_TNPDPPCL_					0	0	0			REV__ENST00000360066.6_2_1:205501150-205501621:+|nuORF	REV__ENST00000360066.6_2_1:205501150-205501621:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	856.3869301204	1	856.38693	855.379654	1.0364	0.00088756	3.6665	0.0031399	4.7029	0.0040275	856.3903693487716	31.308	0.21721	31.308	31.259	31.477	0	426	70	1.3661768	0.04112935	1.3661768	278.014	0	8.36972						319	10	3	NaN	NaN	NaN	0.77489	1	5467	5467		12.588	4.2976	1	36347	+		26735	11838	15401	15837	21309	21309					-0.05382098688073711
TNPDPPCL	8	Unmodified						0	0	0			REV__ENST00000360066.6_2_1:205501150-205501621:+|nuORF	REV__ENST00000360066.6_2_1:205501150-205501621:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	856.38693	855.379654	1.0364	0.00088756	3.6665	0.0031399	4.7029	0.0040275	856.3903693487716	31.308	0.21721	31.308	31.259	31.477	0	426	70	1.3661768	0.04112935	1.3661768	278.014		8.36972	0.0030425	-0.00011159	-0.0001344	NaN	12.588	319	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36347	+		26736	11838	15401	15837							-0.05382098688073711
TNSANFSS	8	Unmodified	_TNSANFSS_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.18013196085	2	414.180132	826.345711	0.86552	0.00035848	5.964	0.0024702	6.8296	0.0028287	414.1825665176111	30.727	0.21713	30.722	30.625	30.842	-0.0057545	1410	76	0.76917666	0.04632467	0.7676573	313.21927	0	18.864044						264	10	3	NaN	NaN	NaN	0.83211	1	4977	4977		4.9097	0	1	35394	+		26737	10700	15402	15838	21310	21310					-0.07440803855467948
TNSANFSS	8	Unmodified						0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	414.180132	826.345711	1.1205	0.00046408	4.9581	0.0020536	6.0786	0.0025176	414.18230344358795	30.656	0.21723	30.656	30.608	30.825	0	1413	58	0.7673241	0.03521055	0.7673241	312.46487		14.338226	-0.032788	-0.00037659	-0.00016657	NaN	4.9097	265	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40146	+		26738	10700	15402	15838							-0.07440803855467948
TNSANFSS	8	Unmodified						0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	414.180132	826.345711	0.86552	0.00035848	5.964	0.0024702	6.8296	0.0028287	414.1825665176111	30.727	0.21713	30.722	30.625	30.842	-0.0057545	1410	76	0.76917666	0.04632467	0.7676573	313.21927		18.864044	0.032788	0.00045667	0.00016657	NaN	4.9097	264	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35394	+		26739	10700	15402	15838							-0.07440803855467948
TNSFPTTSF	9	Unmodified	_TNSFPTTSF_					0	0	0			REV__ENST00000382874.6_1_13:20626423-20632746:+|nuORF	REV__ENST00000382874.6_1_13:20626423-20632746:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4574525266	1	1001.45745	1000.45018	2.1246	0.0021277	-2.5593	-0.0025631	-0.43472	-0.00043536	1001.4540648778253	21.585	0.096292	21.571	21.547	21.643	-0.013895	291	40	1.446459	0.02313602	1.4449396	293.67523	0	4.697296						69	5	2	NaN	NaN	NaN	0.18779	1	8424	8424		26.115	2.7805	1	4865.3	+		26740	11973	15403	15839	21311	21311					-0.05003102098760337
TNTFYIHWY	9	Unmodified	_TNTFYIHWY_					0	0	0		nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.790380902	2	622.790381	1243.56621	1.5762	0.00098165	-0.59478	-0.00037043	0.98142	0.00061122	622.789970455633	25.178	0.14478	25.178	25.129	25.274	0	1005	106	1.0174452	0.06384003	1.0174452	412.04153	0	25.853668						273	7	2	NaN	NaN	NaN	0.68748	1	17614	17614		0.27539	0	1	24031			26741	8026	15404	15840	21312	21312					-0.04583158528066633
TNTFYIHWY	9	Unmodified						0	0	0		nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.790381	1243.56621	1.1489	0.0007155	-0.6429	-0.00040039	0.50595	0.0003151	622.7898071103048	25.177	0.16884	25.165	25.117	25.286	-0.012011	1002	115	1.0192708	0.06932318	1.0177513	412.78085		28.07425	-0.0061263	-3.4535E-05	0.00015307	NaN	0.27539	327	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23823			26742	8026	15404	15840							-0.04583158528066633
TNVAAPSQ	8	Unmodified	_TNVAAPSQ_					0	0	0			REV__COL17A1|p.E391Kfs*12|1|0.48|ENSG00000065618|chr10:104059690-104059690|T/-|frameshift_variant	REV__COL17A1|p.E391Kfs*12|1|0.48|ENSG00000065618|chr10:104059690-104059690|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.3944583393001	1	787.394458	786.387182	1.5592	0.0012277	3.9791	0.0031331	5.5383	0.0043608	787.3981098013842	29.231	0.12068	29.224	29.175	29.296	-0.0077209	576	40	1.2765218	0.023371339	1.2750024	260.12964	0	4.7626038						96	6	2	NaN	NaN	NaN	0.67765	1	4493	4493		20.449	6.4071	1	6961.9	+		26743	8207	15405	15841	21313	21313					-0.01455623096137515
TNYHFLSSP	9	Unmodified	_TNYHFLSSP_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.4999860433	1	1065.49999	1064.49271	1.1705	0.0012471	-6.0376	-0.0064331	-4.8672	-0.005186	1065.4929543351627	37.434	0.096268	37.434	37.41	37.506	0	117	64	1.5493695	0.037163854	1.5493695	314.31183	0	7.539215						126	5	2	NaN	NaN	NaN	0.33629	1	11316	11316		16.584	7.6222	1	9091.7			26744	1720	15406	15842	21314	21314					-0.036957069705295
TPADVFIVF	9	Unmodified	_TPADVFIVF_					0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5400599440001	1	1008.54006	1007.53278	1.4556	0.001468	7.6015	0.0076664	9.057	0.0091344	1008.5485667699561	34.974	0.28955	34.974	34.901	35.191	-4.5776E-05	195	124	1.5033154	0.072696805	1.501796	305.1896	0	14.75824						514	13	3	NaN	NaN	NaN	0.12328	1	8725	8725		32.453	4.6639	1	77106			26745	2106	15407	15843	21315	21315					0.029318397000452023
TPADVFIVF	9	Unmodified						0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.54006	1007.53278	1.1593	0.0011692	10.719	0.010811	11.878	0.01198	1008.553961573287	34.999	0.26534	34.999	34.927	35.192	0	198	124	1.5015416	0.07268906	1.5015416	304.8295		14.756683	0.012816	0.0020741	-0.0001272	NaN	32.453	532	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87841			26746	2106	15407	15843							0.029318397000452023
TPAEGTPAVH	10	Unmodified	_TPAEGTPAVH_					0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.24580622285	2	490.245806	978.47706	1.8503	0.00090712	-2.8226	-0.0013838	-0.97226	-0.00047665	490.2445617704279	16.374	0.096003	16.374	16.302	16.398	0	1281	46	0.84864825	0.027665615	0.84864825	344.70312	0	11.237213						90	5	2	NaN	NaN	NaN	0.75966	1	7840	7840		3.9685	0	1	7043.4	+		26747	9972	15408	15844	21316	21316					-0.013039934875791914
TPAEGTPAVH	10	Unmodified						0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	490.245806	978.47706	1.8503	0.00090712	-2.8226	-0.0013838	-0.97226	-0.00047665	490.2445617704279	16.374	0.096003	16.374	16.302	16.398	0	1281	46	0.84864825	0.027665615	0.84864825	344.70312		11.237213	0.020019	-0.00035779	0.00075972	NaN	3.9685	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7043.4	+		26748	9972	15408	15844							-0.013039934875791914
TPAEGTPAVH	10	Unmodified						0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	490.245806	978.47706	2.8109	0.001378	-2.0014	-0.0009812	0.80946	0.00039684	490.2456863755852	16.347	0.023962	16.334	16.31	16.334	-0.012995	1281	34	0.84864825	0.020285964	0.8471288	344.70312		8.239716	-0.020019	0.00044735	-0.00075972	NaN	3.9685	31	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2091	+		26749	9972	15408	15844							-0.013039934875791914
TPAESDFQL	9	Unmodified	_TPAESDFQL_					0	0	0		ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1	ENSG00000152767|ENST00000319562|FARP1	ENSG00000152767|ENST00000319562|FARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.4680172129	1	1007.46802	1006.46074	1.5609	0.0015725	0.4423	0.0004456	2.0032	0.0020181	1007.4688594761797	24.116	0.1931	24.116	24.068	24.261	0	285	91	1.4500183	0.053376555	1.4500183	294.37393	0	10.836182						337	9	3	NaN	NaN	NaN	0.013959	1	8832	8832		80.901	8.4724	1	39165			26750	3788	15409	15845	21317	21317					-0.042231194443274944
TPAESDFQL	9	Unmodified	_TPAESDFQL_					0	0	0		ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1	ENSG00000152767|ENST00000319562|FARP1	ENSG00000152767|ENST00000319562|FARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4680172129	1	1007.46802	1006.46074	1.6018	0.0016138	-0.44788	-0.00045123	1.1539	0.0011626	1007.4670813933043	24.116	0.14475	24.103	24.079	24.224	-0.012749	282	109	1.4517976	0.06403148	1.4502782	294.73517	0	12.999268						314	7	3	NaN	NaN	NaN	0.015447	1	8664	8664		77.761	19.561	1	34481			26751	3788	15409	15845	21318	21318					-0.042231194443274944
TPAGDIMEL	9	Unmodified	_TPAGDIMEL_					0	0	0		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4550096856002	1	946.45501	945.447733	1.785	0.0016894	-0.5881	-0.00055661	1.1969	0.0011328	946.455173156447	26.625	0.16897	26.625	26.577	26.746	0	348	91	1.412609	0.053501606	1.412609	287.0293	0	10.871033						402	8	4	NaN	NaN	NaN	0.028349	1	6950	6950		61.271	29.71	1	66640			26752	1415	15410	15846	21319	21319					-0.02717273828056932
TPAGDIMEL	9	Unmodified	_TPAGDIMEL_					0	0	0		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.4550096856002	1	946.45501	945.447733	1.307	0.001237	0.22203	0.00021014	1.529	0.0014472	946.4556736448658	26.625	0.14477	26.614	26.566	26.711	-0.010643	348	85	1.412609	0.04991877	1.4110895	287.0293	0	10.143066						382	7	4	NaN	NaN	NaN	0.012495	1	6821	6821		85.344	50.89	1	63956			26753	1415	15410	15846	21320	21320					-0.02717273828056932
TPAGDIMEL	9	Oxidation (M)	_TPAGDIM(Oxidation (M))EL_		TPAGDIM(1)EL		TPAGDIM(83)EL	0	0	1		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4499243077003	1	962.449924	961.442648	1.743	0.0016776	1.3359	0.0012857	3.0789	0.0029633	962.4511685709451	21.73	0.16849	21.73	21.705	21.874	0	333	64	1.4215236	0.03744507	1.4215236	288.77164	0	7.6066895						223	8	2	NaN	NaN	NaN	0.013281	1	7357	7357		82.96	40.643	1	60308			26754	1415	15410	15847	21321	21321		159			-0.03961577690665763
TPAGDIMEL	9	Oxidation (M)	_TPAGDIM(Oxidation (M))EL_		TPAGDIM(1)EL		TPAGDIM(79)EL	0	0	1		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	962.4499243077003	1	962.449924	961.442648	1.5398	0.0014819	0.33473	0.00032216	1.8745	0.0018041	962.450713354184	21.729	0.19257	21.715	21.643	21.836	-0.013897	333	76	1.4215236	0.044567943	1.4200041	288.77167	0	9.05365						336	9	4	NaN	NaN	NaN	0.01452	1	7212	7212		79.199	39.045	1	64566			26755	1415	15410	15847	21322	21322		159			-0.03961577690665763
TPAGGGFPR	9	Unmodified	_TPAGGGFPR_					0	0	0		ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant;ENSG00000185650|ENST00000439696|ZFP36L1;ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	ZFP36L1|p.P75Afs*50|1|0.36|ENSG00000185650|chr14:68790328-68790329|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.22467685025	2	430.224677	858.434801	0.97507	0.0004195	-2.1847	-0.00093993	-1.2097	-0.00052043	430.2234504938521	14.284	0.38323	14.273	14.13	14.513	-0.011219	1401	73	0.77473325	0.04444039	0.7732138	315.28952	0	18.085663						313	17	3	NaN	NaN	NaN	0.23112	1	5382	5382		23.334	1.2081	1	36154			26756	5427	15411	15848	21323	21323					-7.92410529584231E-05
TPALAVIYT	9	Unmodified	_TPALAVIYT_					0	0	0		ENSG00000135763|ENST00000258243|URB2;URB2|p.R159Sfs*8|1|0.19|ENSG00000135763|chr1:229635089-229635089|G/-|frameshift_variant	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	1.5775	0.0014964	-1.5997	-0.0015174	-0.022188	-2.1046E-05	948.5371264689561	26.818	0.048246	26.808	26.783	26.832	-0.010645	261	46	1.4642475	0.02667272	1.462728	297.5124	0	5.419464						64	3	2	NaN	NaN	NaN	0.55027	1	6898	6898		7.5404	0	1	4828.3			26757	2960	15412	15849	21324	21324					0.056918397000458754
TPALAVIYT	9	Unmodified						0	0	0		ENSG00000135763|ENST00000258243|URB2;URB2|p.R159Sfs*8|1|0.19|ENSG00000135763|chr1:229635089-229635089|G/-|frameshift_variant	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.54006	947.532783	1.5214	0.0014431	-1.0202	-0.00096772	0.50113	0.00047534	948.5380417208006	26.795	0.072815	26.795	26.77	26.843	0	264	40	1.4624695	0.023113847	1.4624695	297.15112		4.6963806	-0.0063293	0.00032651	-0.00012928	NaN	7.5404	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5319.1			26758	2960	15412	15849							0.056918397000458754
TPCRWLPA	8	Unmodified	_TPCRWLPA_					0	0	0		ENST00000573062.5_1_17:2246909-2264991:+|nuORF	ENST00000573062.5_1_17:2246909-2264991:+|nuORF	ENST00000573062.5_1_17:2246909-2264991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.2445550126	2	472.244555	942.474557	1.3509	0.00063796	-0.17025	-8.0398E-05	1.1807	0.00055756	472.2452144406597	19.394	0.14418	19.38	19.308	19.452	-0.014141	1350	31	0.80618626	0.018482745	0.8046668	327.62924	0	7.5112915						51	7	2	NaN	NaN	NaN	0.84692	1	6737	6737		1.4396	0	1	2785.3			26759	7648	15413	15850	21325	21325					0.0010187957377638668
TPDEIDHVF	9	Unmodified	_TPDEIDHVF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.7509213905	2	536.750921	1071.48729	2.4358	0.0013074	-0.47067	-0.00025264	1.9651	0.0010548	536.7501987463011	22.356	0.36158	22.356	22.26	22.621	0	1287	91	0.8449601	0.05531639	0.8449601	342.7918	0	22.441284						852	16	5	NaN	NaN	NaN	0.0040938	1	11615	11615		104.71	62.926	1	553540			26760	4878	15414	15851	21326	21326					-0.04559430552990307
TPDEIDHVF	9	Unmodified	_TPDEIDHVF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.7509213905	2	536.750921	1071.48729	1.5834	0.00084992	0.35326	0.00018961	1.9367	0.0010395	536.7504349989704	22.356	0.36136	22.342	22.294	22.655	-0.013731	1287	97	0.8449601	0.059004188	0.84344065	342.7918	0	23.937378						729	16	4	NaN	NaN	NaN	0.00020136	1	11314	11314		116.74	78.605	1	523770			26761	4878	15414	15851	21327	21327					-0.04559430552990307
TPDFTDIVL	9	Unmodified	_TPDFTDIVL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;ENSG00000162337|ENST00000294304|LRP5	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.5248038103001	1	1020.5248	1019.51753	2.224	0.0022696	4.7021	0.0047986	6.926	0.0070682	1020.5253397374311	31.959	0.28959	31.959	31.863	32.152	0	159	115	1.5245869	0.06736672	1.5245869	309.45883	0	13.674011						593	13	4	NaN	NaN	NaN	0.025843	1	9348	9348		64.55	34.952	1	107370			26762	753	15415	15852	21328	21328					0.008549281121986496
TPDGIDLRL	9	Unmodified	_TPDGIDLRL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.27710635125	2	500.277106	998.53966	1.3155	0.00065814	-4.3115	-0.0021569	-2.996	-0.0014988	500.27478887805506	24.309	0.24128	24.309	24.285	24.526	0	1296	67	0.8394264	0.04060048	0.8394264	340.86243	0	16.48648						190	11	2	NaN	NaN	NaN	0.3106	1	8530	8530		18.233	1.6493	1	31915			26763	1751	15416	15853	21329	21329					0.04033152580609567
TPDGIDLRL	9	Unmodified	_TPDGIDLRL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.27710635125	2	500.277106	998.53966	1.1173	0.00055895	-4.4309	-0.0022167	-3.3137	-0.0016578	500.2752164658114	24.333	0.24144	24.32	24.272	24.513	-0.012749	1296	52	0.8394264	0.031368017	0.83790696	340.86243	0	12.737488						171	11	2	NaN	NaN	NaN	0.21451	1	8347	8347		24.4	2.5653	1	29164			26764	1751	15416	15853	21330	21330					0.04033152580609567
TPDGWSFAL	9	Unmodified	_TPDGWSFAL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4676232824	1	993.467623	992.460347	1.2432	0.0012351	1.4843	0.0014746	2.7276	0.0027097	993.4682015293672	31.525	0.14482	31.525	31.452	31.597	0	213	52	1.4926696	0.030174494	1.4926696	303.0905	0	6.127014						200	7	3	NaN	NaN	NaN	0.10956	1	8303	8303		34.439	2.8777	1	18902			26765	1461	15417	15854	21331	21331					-0.03618494373529302
TPDGWSFAL	9	Unmodified	_TPDGWSFAL_					0	0	0		ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4676232824	1	993.467623	992.460347	0.9393	0.00093316	1.0533	0.0010464	1.9926	0.0019796	993.4676687367158	31.524	0.1931	31.519	31.447	31.64	-0.0044174	213	67	1.4926696	0.039051414	1.4911501	303.0905	0	7.929474						239	9	3	NaN	NaN	NaN	0.025843	1	8137	8137		64.55	25.632	1	19424			26766	1461	15417	15854	21332	21332					-0.03618494373529302
TPDHLEPRL	9	Unmodified	_TPDHLEPRL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	359.86109574790004	3	359.861096	1076.56146	1.7973	0.00064677	-0.52539	-0.00018907	1.2719	0.0004577	359.8608026217753	16.71	0.14398	16.71	16.662	16.806	0	1470	61	0.7320868	0.03712207	0.7320868	445.46844	0	22.58847						165	7	2	NaN	NaN	NaN	0.11656	1	11833	11833		29.706	13.884	1	21180			26767	3357	15418	15855	21333	21333					0.026239573292059504
TPDHLEPRL	9	Unmodified	_TPDHLEPRL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2880053885501	2	539.288005	1076.56146	1.5267	0.00082334	-4.2085	-0.0022696	-2.6817	-0.0014462	539.2860593202697	16.778	0.11982	16.765	16.717	16.837	-0.013294	1266	46	0.85786515	0.027644694	0.8563457	348.00647	0	11.214508						146	6	3	NaN	NaN	NaN	0.057383	1	11518	11518		43.776	13.165	1	22631			26768	3357	15418	15855	21334	21334					0.026239573292059504
TPDHLEPRL	9	Unmodified	_TPDHLEPRL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.86109574790004	3	359.861096	1076.56146	1.9641	0.00070681	-1.1073	-0.00039848	0.85681	0.00030833	359.86070436322814	16.778	0.11982	16.765	16.717	16.837	-0.013294	1467	64	0.7339432	0.0389719	0.7324238	446.59805	0	23.71405						155	6	2	NaN	NaN	NaN	0.21199	1	11520	11520		21.85	13.573	1	19588			26769	3357	15418	15855	21335	21335					0.026239573292059504
TPDHLEPRL	9	Unmodified						0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.288005	1076.56146	1.8814	0.0010146	-4.939	-0.0026635	-3.0576	-0.0016489	539.2858585792862	16.734	0.095922	16.734	16.686	16.782	0	1266	46	0.85786515	0.027644694	0.85786515	348.00647		11.214508	-0.015722	-0.00060644	0.00075972	NaN	43.776	144	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24725			26770	3357	15418	15855							0.026239573292059504
TPDIILDDL	9	Unmodified	_TPDIILDDL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.77132248159995	2	507.771322	1013.52809	1.3893	0.00070546	-6.6497	-0.0033765	-5.2604	-0.0026711	507.7680415408261	25.129	0.14474	25.117	25.021	25.165	-0.012011	1293	70	0.84127116	0.042452812	0.8397517	341.54288	0	17.235199						178	7	2	NaN	NaN	NaN	0.62619	1	8949	8949		4.4131	0	1	18343			26771	783	15419	15856	21336	21336					0.02186910766613437
TPDILEIEF	9	Unmodified	_TPDILEIEF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5510185608	1	1076.55102	1075.54374	0.81724	0.0008798	-2.3174	-0.0024948	-1.5002	-0.001615	1076.5488736969057	33.817	0.21714	33.817	33.745	33.962	0	129	88	1.5422925	0.051316142	1.5422925	312.835	0	10.408844						274	10	2	NaN	NaN	NaN	0.062072	1	11793	11793		41.785	5.198	1	36479			26772	2661	15420	15857	21337	21337					0.008991972836838613
TPDILEIEF	9	Unmodified	_TPDILEIEF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5510185608	1	1076.55102	1075.54374	1.0853	0.0011684	-2.0865	-0.0022462	-1.0012	-0.0010779	1077.5507811964094	33.84	0.14479	33.839	33.79	33.935	-0.0018463	123	97	1.5458313	0.05662763	1.5443119	313.55283	0	11.486237						238	7	2	NaN	NaN	NaN	0.089764	1	11483	11483		37.302	15.176	1	33561			26773	2661	15420	15857	21338	21338					0.008991972836838613
TPDLGERIAL	10	Unmodified	_TPDLGERIAL_					0	0	0		nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	nc|ENSG00000153885|Q96SI1-2|KCTD15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.80348827725	2	542.803488	1083.59242	1.7307	0.00093943	-5.3721	-0.002916	-3.6414	-0.0019766	542.8017217093668	23.199	0.14481	23.186	23.138	23.283	-0.013294	1263	88	0.85970795	0.05340606	0.8581885	348.72543	0	21.663239						208	7	3	NaN	NaN	NaN	0.57785	1	11823	11823		16.226	1.8008	1	42441			26774	3819	15421	15858	21339	21339					0.053971106434119065
TPDLLWTPA	9	Unmodified	_TPDLLWTPA_					0	0	0			REV__ENSG00000223496|ENST00000435634|EXOSC6	REV__ENSG00000223496|ENST00000435634|EXOSC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.2687500029	2	507.26875	1012.52295	1.783	0.00090446	-1.9575	-0.00099298	-0.1745	-8.8516E-05	507.26799452889145	25.057	0.072371	25.057	25.033	25.105	0	1326	73	0.8209676	0.044296205	0.8209676	333.30438	0	17.983795						181	4	3	NaN	NaN	NaN	0.39244	1	9079	9079		14.042	0.57854	1	25658	+		26775	11308	15422	15859	21340	21340					0.017186516946594566
TPDLWKETVF	10	Unmodified	_TPDLWKETVF_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.31897116595	2	618.318971	1234.62339	1.0612	0.00065615	-5.7951	-0.0035832	-4.7339	-0.002927	618.314955002175	27.446	0.14484	27.446	27.35	27.495	0	1152	82	0.92775106	0.04955131	0.92775106	375.7474	0	20.068726						240	7	3	NaN	NaN	NaN	0.21887	1	17392	17392		33.907	14.789	1	38136			26776	3297	15423	15860	21341	21341					0.015462639576526271
TPDLWKETVF	10	Unmodified	_TPDLWKETVF_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.31897116595	2	618.318971	1234.62339	0.63623	0.00039339	-5.7898	-0.0035799	-5.1536	-0.0031865	618.3142303821126	27.446	0.24135	27.436	27.363	27.604	-0.010126	1152	76	0.92775106	0.045880854	0.9262317	375.7474	0	18.582153						350	11	3	NaN	NaN	NaN	0.37846	1	16663	16663		24.493	9.0307	1	46783			26777	3297	15423	15860	21342	21342					0.015462639576526271
TPDPSANISL	10	Unmodified	_TPDPSANISL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000468608.1_1_1:226549491-226550854:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5102163786001	1	1014.51022	1013.50294	2.3604	0.0023946	0.13915	0.00014117	2.4995	0.0025358	1014.5099452746518	23.296	0.12058	23.296	23.272	23.393	0	252	82	1.4695803	0.04796493	1.4695803	298.3173	0	9.736664						187	6	2	NaN	NaN	NaN	0.0051241	1	9123	9123		77.516	41.281	1	22620			26778	3450	15424	15861	21343	21343					-0.003271440359412736
TPDPSANISL	10	Unmodified	_TPDPSANISL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000468608.1_1_1:226549491-226550854:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5102163786001	1	1014.51022	1013.50294	2.1121	0.0021427	0.86814	0.00088073	2.9802	0.0030234	1014.511210111626	23.32	0.096493	23.307	23.283	23.379	-0.013296	252	82	1.4695803	0.04796493	1.4680609	298.3173	0	9.736664						209	5	3	NaN	NaN	NaN	0.02603	1	8945	8945		61.199	21.045	1	21817			26779	3450	15424	15861	21344	21344					-0.003271440359412736
TPDPSTPSRL	10	Unmodified	_TPDPSTPSRL_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.777470492	2	535.77747	1069.54039	1.9238	0.0010307	-3.0767	-0.0016484	-1.1529	-0.0006177	535.7754868138444	15.822	0.07198	15.822	15.774	15.846	0	1296	94	0.8394264	0.057181895	0.8394264	340.55472	0	23.19867						195	4	3	NaN	NaN	NaN	0.60059	1	11543	11543		14.854	4.4938	1	18070			26780	5108	15425	15862	21345	21345					0.008399472296559907
TPDSDIFTF	9	Unmodified	_TPDSDIFTF_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.4727682398	1	1042.47277	1041.46549	1.6557	0.0017261	6.7561	0.0070431	8.4119	0.0087691	1042.4788574866752	30.318	0.1448	30.318	30.294	30.439	0	183	97	1.510409	0.056729794	1.510409	306.49478	0	11.511719						278	7	3	NaN	NaN	NaN	0.10956	1	10260	10260		34.439	9.4778	1	23288			26781	409	15426	15863	21346	21346					-0.05358235301559944
TPDSDIFTF	9	Unmodified	_TPDSDIFTF_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.4727682398	1	1042.47277	1041.46549	1.0149	0.001058	5.9727	0.0062263	6.9876	0.0072844	1042.480377569176	30.317	0.14474	30.311	30.263	30.407	-0.0064087	183	100	1.510409	0.058505774	1.5088896	306.49478	0	11.87207						270	7	2	NaN	NaN	NaN	0.10956	1	10054	10054		34.439	20.397	1	29079			26782	409	15426	15863	21347	21347					-0.05358235301559944
TPDTLLNIL	9	Unmodified	_TPDTLLNIL_					0	0	0		nc|ENSG00000136098|P51956-2|NEK3;ENSG00000136098|ENST00000610828|NEK3	nc|ENSG00000136098|P51956-2|NEK3	nc|ENSG00000136098|P51956-2|NEK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.5720883539001	1	999.572088	998.564812	1.0717	0.0010712	0.26615	0.00026603	1.3378	0.0013373	999.5729032707424	31.235	0.14475	31.235	31.211	31.356	0	207	64	1.496219	0.03726256	1.496219	303.7858	0	7.565613						148	7	2	NaN	NaN	NaN	0.089764	1	8534	8534		37.302	1.266	1	26974			26783	2993	15427	15864	21348	21348					0.06547207383187015
TPDTRELEF	9	Unmodified	_TPDTRELEF_					0	0	0		ENST00000557802.5_1_14:24584825-24587275:+|nuORF;ENST00000396936.5_1_14:24584803-24587275:+|nuORF;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2694782844001	2	554.269478	1106.5244	1.0304	0.00057114	-3.3364	-0.0018493	-2.306	-0.0012781	554.2688769944835	20.959	0.19244	20.959	20.911	21.103	0	1257	73	0.86339295	0.04419577	0.86339295	350.12903	0	17.922546						214	9	3	NaN	NaN	NaN	0.29341	1	13123	13123		19.336	8.3713	1	23570			26784	1282	15428	15865	21349	21349					-0.024597590072289677
TPDTRELEF	9	Unmodified	_TPDTRELEF_					0	0	0		ENST00000557802.5_1_14:24584825-24587275:+|nuORF;ENST00000396936.5_1_14:24584803-24587275:+|nuORF;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	ENST00000557802.5_1_14:24584825-24587275:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2694782844001	2	554.269478	1106.5244	0.959	0.00053155	-0.41307	-0.00022895	0.54593	0.00030259	554.7703041386247	20.959	0.16852	20.945	20.897	21.065	-0.014088	1254	49	0.8652351	0.029476583	0.86371565	350.87607	0	11.953552						143	8	2	NaN	NaN	NaN	0.34188	1	12752	12752		16.226	5.6209	1	19782			26785	1282	15428	15865	21350	21350					-0.024597590072289677
TPDWAERQL	9	Unmodified	_TPDWAERQL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2776376675	2	558.277638	1114.54072	1.9235	0.0010738	-1.6461	-0.00091896	0.27743	0.00015488	558.2773863508701	19.828	0.28838	19.828	19.684	19.972	0	1245	76	0.87076044	0.046034753	0.87076044	353.0855	0	18.666656						482	13	4	NaN	NaN	NaN	0.0014219	1	13459	13459		112.76	61.93	1	102000			26786	5157	15429	15866	21351	21351					-0.01196633050494711
TPDWAERQL	9	Unmodified	_TPDWAERQL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2776376675	2	558.277638	1114.54072	1.6188	0.00090374	-2.8109	-0.0015693	-1.1921	-0.00066552	558.2767219926901	19.827	0.26475	19.813	19.717	19.982	-0.014141	1245	94	0.87076044	0.05708927	0.869241	353.0855	0	23.14917						459	12	3	NaN	NaN	NaN	0.022185	1	13072	13072		69.233	43.118	1	101280			26787	5157	15429	15866	21352	21352					-0.01196633050494711
TPEDARWIL	9	Unmodified	_TPEDARWIL_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.790380902	2	550.790381	1099.56621	1.4652	0.00080703	0.31772	0.000175	1.7829	0.00098203	550.7899122377937	25.033	0.26539	25.021	24.876	25.141	-0.012011	1239	64	0.87444305	0.038677573	0.8729236	354.63773	0	15.686005						167	12	2	NaN	NaN	NaN	0.25424	1	12500	12500		21.85	4.0514	1	33723			26788	5745	15430	15867	21353	21353					0.02040841471944077
TPEEGAQAL	9	Unmodified	_TPEEGAQAL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.4418024624	1	915.441802	914.434526	2.2452	0.0020553	0.41273	0.00037783	2.6579	0.0024332	915.4421986716263	17.042	0.095984	17.029	16.981	17.077	-0.013296	426	37	1.3661768	0.021459937	1.3646574	277.72986	0	4.3625793						71	5	2	NaN	NaN	NaN	0.064504	1	6191	6191		40.957	17.622	1	5010			26789	1220	15431	15868	21354	21354					-0.026113886158100286
TPEGEFVSM	9	Unmodified	_TPEGEFVSM_					0	0	0		EHBP1-MDH1|3|fusion;EHBP1-MDH1|4|fusion;EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion;nc|ENSG00000014641|P40925-2|MDH1;ENSG00000014641|ENST00000233114|MDH1;nc|ENSG00000014641|P40925-3|MDH1	EHBP1-MDH1|3|fusion	EHBP1-MDH1|3|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4342742435001	1	996.434274	995.426998	2.1385	0.0021309	-0.71202	-0.00070948	1.4265	0.0014214	996.4334806475646	23.586	0.07226	23.586	23.562	23.634	0	303	40	1.4393384	0.023145795	1.4393384	292.24957	0	4.699646						65	4	2	NaN	NaN	NaN	0.055351	1	8390	8390		44.638	25.52	1	6227.4			26790	281	15432	15869	21355	21355					-0.07089864207728169
TPEGEFVSM	9	Oxidation (M)	_TPEGEFVSM(Oxidation (M))_		TPEGEFVSM(1)		TPEGEFVSM(61)	0	0	1		EHBP1-MDH1|3|fusion;EHBP1-MDH1|4|fusion;EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion;nc|ENSG00000014641|P40925-2|MDH1;ENSG00000014641|ENST00000233114|MDH1;nc|ENSG00000014641|P40925-3|MDH1	EHBP1-MDH1|3|fusion	EHBP1-MDH1|3|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4291888656002	1	1012.42919	1011.42191	2.1459	0.0021725	1.8855	0.0019089	4.0314	0.0040815	1012.4305157077669	18.89	0.096144	18.876	18.852	18.948	-0.014061	306	46	1.4375578	0.026709557	1.4360384	291.82495	0	5.422058						89	5	2	NaN	NaN	NaN	0.028349	1	8843	8843		61.271	31.673	1	6722.1			26791	281	15432	15870	21356	21356		23			-0.08334168070337
TPEIMAPIL	9	Unmodified	_TPEIMAPIL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	984.5434307624001	1	984.543431	983.536154	1.3235	0.001303	-0.42548	-0.0004189	0.89799	0.00088411	984.5432766004544	31.139	0.16894	31.139	31.066	31.235	0	225	97	1.4855686	0.056826234	1.4855686	301.68613	0	11.540131						374	8	4	NaN	NaN	NaN	0.012648	1	8014	8014		84.879	51.18	1	62281			26792	2660	15433	15871	21357	21357					0.043727664824018575
TPEIMAPIL	9	Unmodified	_TPEIMAPIL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5434307624001	1	984.543431	983.536154	1.4928	0.0014697	0.54914	0.00054065	2.0419	0.0020104	984.5449321649951	31.114	0.21721	31.109	31.06	31.277	-0.0050716	222	100	1.4873441	0.05858028	1.4858247	302.04672	0	11.896362						400	10	4	NaN	NaN	NaN	0.014046	1	7841	7841		80.639	46.94	1	66108			26793	2660	15433	15871	21358	21358					0.043727664824018575
TPEIMAPIL	9	Oxidation (M)	_TPEIM(Oxidation (M))APIL_		TPEIM(1)APIL		TPEIM(59)APIL	0	0	1		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.5383453845002	1	1000.53835	999.531069	1.9863	0.0019873	-3.0736	-0.0030752	-1.0873	-0.0010879	1000.5390745956305	27.881	0.09654	27.881	27.833	27.929	0	213	118	1.4926696	0.069245934	1.4926696	303.06116	0	14.059235						267	5	2	NaN	NaN	NaN	0.030391	1	8574	8574		58.599	30.81	1	50303			26794	2660	15433	15872	21359	21359		303			0.031284626197930265
TPEIMAPIL	9	Oxidation (M)	_TPEIM(Oxidation (M))APIL_		TPEIM(1)APIL		TPEIM(65)APIL	0	0	1		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.77281092555006	2	500.772811	999.531069	1.7059	0.00085428	-2.2361	-0.0011198	-0.53021	-0.00026552	500.77140347378787	27.881	0.1448	27.881	27.833	27.977	0	1305	67	0.83389086	0.04060924	0.83389086	338.61005	0	16.489807						217	7	3	NaN	NaN	NaN	0.025843	1	8575	8575		64.55	30.852	1	30327			26795	2660	15433	15872	21360	21360		303			0.031284626197930265
TPEKSVVSL	9	Unmodified	_TPEKSVVSL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.2740323460501	2	480.274032	958.533512	2.1221	0.0010192	-4.5541	-0.0021872	-2.432	-0.001168	480.2719102340297	18.005	0.16791	18.005	17.957	18.125	0	1341	55	0.8117308	0.03325814	0.8117308	329.80307	0	13.512665						216	8	3	NaN	NaN	NaN	0.25548	1	7298	7298		21.771	1.3224	1	29032			26796	1424	15434	15873	21361	21361					0.052586343491157095
TPEKSVVSL	9	Unmodified	_TPEKSVVSL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.2740323460501	2	480.274032	958.533512	2.2496	0.0010804	-3.592	-0.0017251	-1.3424	-0.00064471	480.272274766166	18.026	0.16802	18.012	17.964	18.132	-0.013786	1344	52	0.8098828	0.031412125	0.8083634	329.05225	0	12.762634						220	8	3	NaN	NaN	NaN	0.17328	1	7161	7161		27.046	7.8829	1	31099			26797	1424	15434	15873	21362	21362					0.052586343491157095
TPENGYWTM	9	Unmodified	_TPENGYWTM_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.4560723180998	1	1098.45607	1097.4488	1.6293	0.0017898	2.4165	0.0026545	4.0459	0.0044442	1098.4603050940923	24.671	0.24125	24.671	24.623	24.864	0	168	58	1.5192716	0.033667326	1.5192716	308.08755	0	6.8272705						286	11	3	NaN	NaN	NaN	0.012861	1	12716	12716		84.233	46.93	1	26061			26798	1839	15435	15874	21363	21363					-0.09603059459186625
TPENGYWTM	9	Unmodified	_TPENGYWTM_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.4560723180998	1	1098.45607	1097.4488	1.703	0.0018707	0.18922	0.00020784	1.8923	0.0020786	1098.4560376273412	24.671	0.096428	24.658	24.61	24.707	-0.012392	165	58	1.5210435	0.03366363	1.5195241	308.4469	0	6.826538						180	5	3	NaN	NaN	NaN	0.032689	1	12385	12385		55.592	31.03	1	16764			26799	1839	15435	15874	21364	21364					-0.09603059459186625
TPENGYWTM	9	Oxidation (M)	_TPENGYWTM(Oxidation (M))_		TPENGYWTM(1)		TPENGYWTM(56)	0	0	1		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.4509869401998	1	1114.45099	1113.44371	2.0164	0.0022472	0.2715	0.00030257	2.2879	0.0025497	1114.4506766474478	20.045	0.19222	20.045	19.972	20.165	0	183	64	1.510409	0.03724277	1.510409	306.2357	0	7.550995						182	9	2	NaN	NaN	NaN	0.032409	1	13396	13396		55.958	26.36	1	12889			26800	1839	15435	15875	21365	21365		209			-0.10847363321795456
TPENGYWTM	9	Oxidation (M)	_TPENGYWTM(Oxidation (M))_		TPENGYWTM(1)		TPENGYWTM(96)	0	0	1		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1114.4509869401998	1	1114.45099	1113.44371	1.4463	0.0016119	0.57781	0.00064395	2.0242	0.0022558	1114.4513811105505	20.044	0.1444	20.03	19.958	20.102	-0.014141	186	61	1.5086359	0.035467386	1.5071164	305.8762	0	7.19104						174	7	2	NaN	NaN	NaN	0.0080618	1	13016	13016		96.341	59.755	1	12706			26801	1839	15435	15875	21366	21366		209			-0.10847363321795456
TPEPMPMSM	9	Unmodified	_TPEPMPMSM_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000467182.1_1_13:110813537-110815831:-|nuORF;ENSG00000187498|ENST00000375820|COL4A1	nc|ENSG00000188153|P29400|COL4A5;ENST00000467182.1_1_13:110813537-110815831:-|nuORF	nc|ENSG00000188153|P29400|COL4A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.4198865077002	1	1020.41989	1019.41261	2.0426	0.0020843	0.63817	0.0006512	2.6807	0.0027355	1020.421254474695	24.212	0.048264	24.199	24.175	24.224	-0.012749	231	70	1.4820169	0.040867686	1.4804975	300.81848	0	8.295288						92	3	3	NaN	NaN	NaN	0.026295	1	9145	9145		63.958	38.997	1	5984.7			26802	5536;5505	15436	15876	21367	21367					-0.09631975951867844
TPEPMPMSM	9	Unmodified						0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000467182.1_1_13:110813537-110815831:-|nuORF;ENSG00000187498|ENST00000375820|COL4A1	nc|ENSG00000188153|P29400|COL4A5;ENST00000467182.1_1_13:110813537-110815831:-|nuORF	nc|ENSG00000188153|P29400|COL4A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1020.41989	1019.41261	2.332	0.0023797	-1.6557	-0.0016895	0.67638	0.0006902	1020.4178349850689	24.188	0.024174	24.188	24.188	24.213	0	231	58	1.4820169	0.033753037	1.4820169	300.81848		6.851166	-0.0055573	-0.0010403	0.00075972	NaN	63.958	55	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4886.3			26803	5536;5505	15436	15876							-0.09631975951867844
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5203871344	1	970.520387	969.513111	2.0322	0.0019723	-1.1942	-0.001159	0.83795	0.00081325	970.5191354340528	21.488	0.19285	21.488	21.44	21.633	0	300	112	1.4411188	0.065897584	1.4411188	292.71786	0	13.38501						426	9	4	NaN	NaN	NaN	0.022082	1	7591	7591		69.363	24.725	1	102920			26804	5974	15437	15877	21368	21368					0.027134636892810704
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.7638318005	2	485.763832	969.513111	2.209	0.0010731	-0.59297	-0.00028805	1.616	0.00078501	485.7626527689526	21.488	0.38545	21.488	21.344	21.73	0	1332	79	0.8172735	0.04803437	0.8172735	332.00186	0	19.513062						721	17	5	NaN	NaN	NaN	0.032826	1	7592	7592		55.413	10.248	1	402390			26805	5974	15437	15877	21369	21369					0.027134636892810704
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5203871344	1	970.520387	969.513111	1.8056	0.0017524	0.11609	0.00011267	1.9217	0.001865	970.5203116303194	21.488	0.096466	21.488	21.464	21.561	0	213	46	1.4926696	0.026627302	1.4926696	303.18878	0	5.408539						103	5	2	NaN	NaN	NaN	0.022082	1	7593	7593		69.363	29.904	1	8811.5			26806	5974	15437	15877	21370	21370					0.027134636892810704
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.7638318005	2	485.763832	969.513111	2.1878	0.0010628	-1.1046	-0.00053657	1.0833	0.00052621	485.7631070394607	21.489	0.31307	21.475	21.378	21.691	-0.014006	1332	73	0.8172735	0.04433936	0.81575406	332.00186	0	18.012054						485	14	3	NaN	NaN	NaN	0.02857	1	7450	7450		60.982	16.343	1	368310			26807	5974	15437	15877	21371	21371					0.027134636892810704
TPEQQAAIL	9	Unmodified	_TPEQQAAIL_					0	0	0		ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	ENST00000560311.1_1_14:24634973-24635402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5203871344	1	970.520387	969.513111	1.6841	0.0016344	-0.37253	-0.00036155	1.3115	0.0012729	970.5196591706762	21.489	0.19276	21.475	21.426	21.619	-0.014006	300	166	1.4411188	0.09781039	1.4395994	292.71786	0	19.867096						457	9	3	NaN	NaN	NaN	0.04743	1	7451	7451		48.002	16.327	1	112870			26808	5974	15437	15877	21372	21372					0.027134636892810704
TPESKPTIL	9	Unmodified	_TPESKPTIL_					0	0	0		ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.28185737815005	2	493.281857	984.549162	1.9451	0.00095947	-0.9781	-0.00048248	0.96698	0.00047699	493.2818651542787	17.477	0.11989	17.477	17.429	17.549	0	1329	40	0.81912065	0.024010658	0.81912065	332.68118	0	9.75177						87	6	2	NaN	NaN	NaN	0.27507	1	8046	8046		20.513	5.0506	1	8612.3			26809	719	15438	15878	21373	21373					0.056269208661547054
TPESKPTIL	9	Unmodified	_TPESKPTIL_					0	0	0		ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.28185737815005	2	493.281857	984.549162	1.334	0.00065806	0.32439	0.00016002	1.6584	0.00081808	493.2815896354848	17.498	0.12008	17.484	17.436	17.556	-0.013569	1329	40	0.81912065	0.024008036	0.8176012	332.68118	0	9.750732						119	6	2	NaN	NaN	NaN	0.42817	1	7872	7872		12.57	1.3994	1	10942			26810	719	15438	15878	21374	21374					0.056269208661547054
TPFAFVIDL	9	Unmodified	_TPFAFVIDL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5557100082002	1	1022.55571	1021.54843	1.9074	0.0019504	-0.11043	-0.00011292	1.797	0.0018375	1022.5556534961656	37.121	0.12064	37.121	37.072	37.193	0	180	91	1.5121819	0.053144813	1.5121819	306.93274	0	10.786987						203	6	2	NaN	NaN	NaN	0.04947	1	9439	9439		47.136	2.8334	1	18236			26811	2445	15439	15879	21375	21375					0.03852126217100249
TPFAFVIDL	9	Unmodified	_TPFAFVIDL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5557100082002	1	1022.55571	1021.54843	1.3101	0.0013397	0.24045	0.00024588	1.5506	0.0015856	1022.5557462563083	37.118	0.12047	37.121	37.072	37.193	0.0022507	177	88	1.5139546	0.051365137	1.5124352	307.29257	0	10.425751						170	6	2	NaN	NaN	NaN	0.016254	1	9244	9244		76.739	20.792	1	12849			26812	2445	15439	15879	21376	21376					0.03852126217100249
TPFDIPLNP	9	Unmodified	_TPFDIPLNP_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5302235392	1	1013.53022	1012.52295	2.3978	0.0024302	0.62864	0.00063714	3.0264	0.0030674	1013.5311472433484	29.932	0.28965	29.932	29.836	30.125	0	219	148	1.4891195	0.08692765	1.4891195	302.28757	0	17.646088						618	13	4	NaN	NaN	NaN	0.030669	1	9083	9083		58.235	7.4047	1	123620	+		26813	8691	15440	15880	21377	21377					0.017186516946594566
TPFEGESLI	9	Unmodified	_TPFEGESLI_					0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.75039007425	2	496.75039	991.486227	1.5979	0.00079375	6.2952	0.0031272	7.8931	0.0039209	496.7535963068373	21.488	0.14456	21.488	21.464	21.609	0	1302	55	0.8357362	0.033225775	0.8357362	339.39673	0	13.493164						141	7	2	NaN	NaN	NaN	0.36492	1	8261	8261		15.175	1.1338	1	15476	+		26814	10743	15441	15881	21378	21378					-0.009856449219000751
TPFEGESLI	9	Unmodified						0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.75039	991.486227	1.5979	0.00079375	6.2952	0.0031272	7.8931	0.0039209	496.7535963068373	21.488	0.14456	21.488	21.464	21.609	0	1302	55	0.8357362	0.033225775	0.8357362	339.39673		13.493164	-0.017137	-0.00072372	0.0016824	NaN	15.175	141	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15476	+		26815	10743	15441	15881							-0.009856449219000751
TPFEGESLI	9	Unmodified						0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.75039	991.486227	1.1864	0.00058935	7.6374	0.0037939	8.8238	0.0043832	496.7538000218381	21.537	0.12055	21.523	21.45	21.571	-0.014004	1305	73	0.83389086	0.04431057	0.8323714	338.6473		17.994751	0.017137	0.00060974	-0.0016824	NaN	15.175	133	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16314	+		26816	10743	15441	15881							-0.009856449219000751
TPFHEIMSL	9	Unmodified	_TPFHEIMSL_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7680598986501	2	537.76806	1073.52157	2.482	0.0013347	-1.9678	-0.0010582	0.5142	0.00027652	537.7672293416465	25.564	0.31363	25.564	25.395	25.708	0	1254	79	0.8652351	0.04790461	0.8652351	351.00873	0	19.43393						673	14	5	NaN	NaN	NaN	0.021105	1	11708	11708		70.6	17.976	1	220690			26817	3937	15442	15882	21379	21379					-0.012253056657300476
TPFHEIMSL	9	Unmodified	_TPFHEIMSL_					0	0	0		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7680598986501	2	537.76806	1073.52157	2.0884	0.0011231	-0.79336	-0.00042665	1.295	0.00069641	537.7675825822072	25.588	0.33778	25.576	25.455	25.793	-0.0116	1254	79	0.8652351	0.047899425	0.86371565	351.00873	0	19.431854						674	15	5	NaN	NaN	NaN	0.0072287	1	11406	11406		98.041	45.417	1	227420			26818	3937	15442	15882	21380	21380					-0.012253056657300476
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(93)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7655172097001	2	545.765517	1089.51648	1.8146	0.00099035	-2.5296	-0.0013806	-0.71496	-0.0003902	545.7644267882672	21.898	0.096384	21.898	21.826	21.922	0	1266	79	0.85786515	0.04789424	0.85786515	347.95416	0	19.426117						291	5	3	NaN	NaN	NaN	0.0094682	1	12370	12370		93.472	40.848	1	105890			26819	3937	15442	15883	21381	21381		426			-0.02469609528361616
TPFHEIMSL	9	Oxidation (M)	_TPFHEIM(Oxidation (M))SL_		TPFHEIM(1)SL		TPFHEIM(53)SL	0	0	1		nc|ENSG00000156970|O60566-3|BUB1B;ENSG00000156970|ENST00000287598|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-3|BUB1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7655172097001	2	545.765517	1089.51648	1.4518	0.00079233	-2.1285	-0.0011617	-0.67677	-0.00036936	545.7648521289105	21.922	0.096329	21.908	21.812	21.908	-0.013897	1269	76	0.8560222	0.04605466	0.85450274	347.20663	0	18.679962						264	5	3	NaN	NaN	NaN	0.036546	1	12062	12062		52.624	23.026	1	87622			26820	3937	15442	15883	21382	21382		426			-0.02469609528361616
TPFLYDLVM	9	Unmodified	_TPFLYDLVM_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5539954486999	1	1098.554	1097.54672	1.2182	0.0013383	-0.93707	-0.0010294	0.28116	0.00030887	1098.5530437869966	35.434	0.193	35.434	35.337	35.53	0	66	118	1.579413	0.06892371	1.579413	320.28308	0	13.976776						625	9	5	NaN	NaN	NaN	0.016254	1	12746	12746		76.739	35.279	1	107080			26821	1360;4142	15443	15884	21383	21383					0.001847491368152987
TPFLYDLVM	9	Unmodified	_TPFLYDLVM_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.78063595765	2	549.780636	1097.54672	0.80024	0.00043996	-4.5908	-0.0025239	-3.7906	-0.002084	549.7779129035667	35.432	0.12056	35.433	35.409	35.529	0.00052643	1221	61	0.885486	0.036801934	0.88396657	359.1245	0	14.925659						120	6	3	NaN	NaN	NaN	0.094712	1	12411	12411		36.586	9.8549	1	9887.2			26822	1360;4142	15443	15884	21384	21384					0.001847491368152987
TPFLYDLVM	9	Unmodified	_TPFLYDLVM_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5539954486999	1	1098.554	1097.54672	1.3778	0.0015136	-0.74994	-0.00082385	0.62788	0.00068976	1098.5532993397278	35.432	0.24107	35.433	35.361	35.602	0.00052643	63	124	1.5811787	0.0724659	1.5796592	320.6411	0	14.695068						663	11	4	NaN	NaN	NaN	0.0072287	1	12412	12412		98.041	42.094	1	107960			26823	1360;4142	15443	15884	21385	21385					0.001847491368152987
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(44)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7780932687	2	557.778093	1113.54163	1.2741	0.00071066	-1.5464	-0.00086256	-0.27232	-0.0001519	557.7772930552835	31.959	0.28961	31.959	31.839	32.128	0	1215	85	0.8891654	0.051528275	0.8891654	360.5525	0	20.89447						615	13	5	NaN	NaN	NaN	0.056143	1	13421	13421		44.302	17.571	1	173890			26824	1360;4142	15443	15885	21386	21386		151			-0.010595547257935323
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(140)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.5489100707998	1	1114.54891	1113.54163	1.6358	0.0018231	0.37051	0.00041295	2.0063	0.0022361	1115.552633050269	31.959	0.28959	31.959	31.863	32.152	0	63	118	1.5811787	0.06891644	1.5811787	320.5839	0	13.972809						372	13	2	NaN	NaN	NaN	1.2958E-07	1	13422	13422		136.74	94.955	1	82741			26825	1360;4142	15443	15885	21387	21387		151			-0.010595547257935323
TPFLYDLVM	9	Oxidation (M)	_TPFLYDLVM(Oxidation (M))_		TPFLYDLVM(1)		TPFLYDLVM(68)	0	0	1		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7780932687	2	557.778093	1113.54163	0.96703	0.00053939	-1.379	-0.00076918	-0.41199	-0.0002298	557.7773938992807	31.934	0.24128	31.93	31.834	32.075	-0.0037613	1212	88	0.8910048	0.053365707	0.88948536	361.29837	0	21.639557						584	11	5	NaN	NaN	NaN	0.023074	1	13040	13040		68.108	29.19	1	187360			26826	1360;4142	15443	15885	21388	21388		151			-0.010595547257935323
TPFNTREPVM	10	Oxidation (M)	_TPFNTREPVM(Oxidation (M))_		TPFNTREPVM(1)		TPFNTREPVM(46)	0	0	1		ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.2924304519499	2	604.29243	1206.57031	1.5189	0.00091784	-1.1018	-0.0006658	0.41708	0.00025204	604.2922091472418	16.901	0.071911	16.901	16.877	16.949	0	1260	67	0.8615505	0.04051274	0.8615505	349.02527	0	16.412231						140	4	3	NaN	NaN	NaN	0.10301	1	16645	16645		45.55	22.464	1	15211			26827	6081	15444	15886	21389	21389		616			-0.024714370966648858
TPFPDEWTV	9	Unmodified	_TPFPDEWTV_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1;ENSG00000167771|ENST00000301459|RCOR2;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	ENSG00000089902|ENST00000262241|RCOR1;nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5044027191998	1	1091.5044	1090.49713	1.9054	0.0020798	-0.40631	-0.00044348	1.4991	0.0016363	1091.5043745483756	29.377	0.16894	29.377	29.329	29.498	0	186	61	1.5086359	0.03546369	1.5086359	305.95502	0	7.192108						283	8	3	NaN	NaN	NaN	0.014046	1	12414	12414		80.639	51.972	1	29773			26828	1046;2153	15445	15887	21390	21390					-0.044502425476366625
TPFPDEWTV	9	Unmodified	_TPFPDEWTV_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1;ENSG00000167771|ENST00000301459|RCOR2;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	ENSG00000089902|ENST00000262241|RCOR1;nc|ENSG00000117625|Q9P2K3-2|RCOR3	nc|ENSG00000117625|Q9P2K3-2|RCOR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5044027191998	1	1091.5044	1090.49713	1.0054	0.0010974	0.39772	0.00043411	1.4031	0.0015315	1091.5043726723775	29.4	0.19305	29.393	29.32	29.513	-0.0077209	183	61	1.510409	0.035459995	1.5088896	306.3146	0	7.191345						214	9	2	NaN	NaN	NaN	0.074859	1	12106	12106		39.459	8.8486	1	27341			26829	1046;2153	15445	15887	21391	21391					-0.044502425476366625
TPFYHQWVQR	10	Unmodified	_TPFYHQWVQR_					0	0	0		ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	ENST00000459899.1_1_14:35857513-35858113:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	454.56316121656664	3	454.563161	1360.66765	0.63108	0.00028687	6.7195	0.0030544	7.3505	0.0033413	454.5662924466489	12.46	0.095965	12.46	12.46	12.556	0	1386	52	0.78399014	0.03147006	0.78399014	475.79263	0	19.098724						84	5	2	NaN	NaN	NaN	0.62764	1	19690	19690		7.1304	3.2217	1	9861.4			26830	7070	15446	15888	21392	21392					0.0017471289449986216
TPGGGWAA	8	Unmodified	_TPGGGWAA_					0	0	0		ENST00000527545.1_1_8:144917834-144919303:-|nuORF;nc|ENSG00000185189|Q9NSY0-4|NRBP2	ENST00000527545.1_1_8:144917834-144919303:-|nuORF	ENST00000527545.1_1_8:144917834-144919303:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	716.3362151789	1	716.336215	715.328939	1.6086	0.0011523	6.4336	0.0046086	8.0422	0.0057609	716.3409186757724	29.86	0.31379	29.86	29.787	30.101	0	621	118	1.2495319	0.070279	1.2495319	255.06313	0	14.345856						517	14	4	NaN	NaN	NaN	0.75682	1	3521	3521		15.013	0	1	89848			26831	7433	15447	15889	21393	21393					-0.040112599507665436
TPGGSDDL	8	Unmodified	_TPGGSDDL_					0	0	0			REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.3311893805	1	761.331189	760.323913	2.1496	0.0016366	4.9809	0.0037921	7.1306	0.0054287	761.3348751303131	22.958	0.096474	22.945	22.896	22.993	-0.01354	531	34	1.3034686	0.019744158	1.3019491	265.777	0	4.025818						69	5	2	NaN	NaN	NaN	0.82332	1	4142	4142		6.0903	0.62448	1	4649.1	+		26832	11326	15448	15890	21394	21394					-0.06583608604046276
TPGGSDDL	8	Unmodified						0	0	0			REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	REV__ZBTB22|p.P418Gfs*50|1|0.35|ENSG00000236104|chr6:33315661-33315665|AAGGG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	761.331189	760.323913	2.1496	0.0016366	4.9809	0.0037921	7.1306	0.0054287	761.3348751303131	22.958	0.096474	22.945	22.896	22.993	-0.01354	531	34	1.3034686	0.019744158	1.3019491	265.777		4.025818	0.016967	-0.00045968	0.00013783	NaN	6.0903	69	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4649.1	+		26833	11326	15448	15890							-0.06583608604046276
TPGGVPSP	8	Unmodified	_TPGGVPSP_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3671809563001	1	711.367181	710.359904	1.0431	0.00074204	6.6241	0.0047122	7.6672	0.0054542	711.3714339517469	34.636	0.14465	34.636	34.587	34.732	-0.0006485	585	61	1.2711272	0.035977006	1.2696078	259.50543	0	7.3448486						134	7	2	NaN	NaN	NaN	0.84727	1	3370	3370		1.2418	0	1	11759			26834	3014	15449	15891	21395	21395					-0.006861066365217994
TPGPAMGA	8	Unmodified	_TPGPAMGA_					0	0	0			REV__ENST00000269389.7_1_17:80279290-80279587:-|nuORF	REV__ENST00000269389.7_1_17:80279290-80279587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3286869600001	1	701.328687	700.32141	1.1139	0.00078122	5.9044	0.0041409	7.0183	0.0049221	701.3327078988082	24.888	0.12064	24.875	24.851	24.972	-0.012394	588	55	1.2693287	0.03237927	1.2678093	259.20853	0	6.6121674						105	6	2	NaN	NaN	NaN	0.84651	1	3163	3163		1.6704	0	1	9226	+		26835	11584	15450	15892	21396	21396					-0.04073735542681334
TPGPGGAH	8	Unmodified	_TPGPGGAH_					0	0	0			REV__ENSG00000148297|ENST00000343730|MED22	REV__ENSG00000148297|ENST00000343730|MED22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3314641520001	1	693.331464	692.324188	0.6983	0.00048416	7.2728	0.0050425	7.9711	0.0055266	693.3355622314147	39.694	0.12056	39.694	39.694	39.815	0	654	67	1.2297117	0.039646745	1.2297117	251.17397	0	8.098007						162	6	2	NaN	NaN	NaN	0.84692	1	3083	3083		1.4396	0	1	14667	+		26836	9974	15451	15893	21397	21397					-0.03428144093527408
TPGPQQLL	8	Unmodified	_TPGPQQLL_					0	0	0		ENST00000487671.1_1_22:31840579-31845472:-|nuORF;nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	ENST00000487671.1_1_22:31840579-31845472:-|nuORF	ENST00000487671.1_1_22:31840579-31845472:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.24253525240005	2	427.242535	852.470518	1.1786	0.00050356	-9.8616	-0.0042133	-8.683	-0.0037098	427.2387052375566	29.329	0.048258	29.329	29.305	29.353	0	1404	34	0.77288127	0.02036959	0.77288127	314.57047	0	8.290619						53	3	2	NaN	NaN	NaN	0.78967	1	5422	5422		10.605	0	1	5283			26837	5366	15452	15894	21398	21398					0.0383811335171913
TPGPQQLL	8	Unmodified						0	0	0		ENST00000487671.1_1_22:31840579-31845472:-|nuORF;nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	ENST00000487671.1_1_22:31840579-31845472:-|nuORF	ENST00000487671.1_1_22:31840579-31845472:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	427.242535	852.470518	1.0268	0.00043868	-10.366	-0.0044289	-9.3396	-0.0039903	427.2380828363943	29.328	0.096533	29.32	29.296	29.393	-0.0077209	1404	34	0.77288127	0.020371795	0.7713618	314.57047		8.291534	-0.0042606	-0.00025658	-0.00075972	NaN	10.605	66	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6566			26838	5366	15452	15894							0.0383811335171913
TPGPSEESM	9	Unmodified	_TPGPSEESM_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.3822386730001	1	934.382239	933.374962	1.7912	0.0016737	-1.5116	-0.0014124	0.2796	0.00026125	934.3807237466991	16.038	0.11998	16.038	15.99	16.11	0	444	52	1.3554435	0.030412912	1.3554435	275.46494	0	6.180786						109	6	2	NaN	NaN	NaN	0.094712	1	6672	6672		36.586	21.411	1	9185.7			26839	3648	15453	15895	21399	21399					-0.09439027621488094
TPGPSEESM	9	Unmodified	_TPGPSEESM_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.3822386730001	1	934.382239	933.374962	2.3302	0.0021773	-0.57912	-0.00054112	1.7511	0.0016362	934.3819727370159	16.011	0.23972	15.999	15.951	16.19	-0.012611	438	49	1.359022	0.02862537	1.3575026	276.1922	0	5.817505						153	11	2	NaN	NaN	NaN	0.074859	1	6531	6531		39.459	25.417	1	10738			26840	3648	15453	15895	21400	21400					-0.09439027621488094
TPGPSEESM	9	Oxidation (M)	_TPGPSEESM(Oxidation (M))_		TPGPSEESM(1)		TPGPSEESM(87)	0	0	1		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	950.3771532951001	1	950.377153	949.369877	1.3212	0.0012556	-0.47428	-0.00045075	0.84688	0.00080485	950.377204902669	13.014	0.23962	13.004	12.957	13.196	-0.00947	444	46	1.3554435	0.026840687	1.353924	275.39746	0	5.4534607						131	11	2	NaN	NaN	NaN	0.011942	1	6928	6928		87.021	52.582	1	9227			26841	3648	15453	15896	21401	21401		407			-0.10683331484096925
TPGQPNAV	8	Unmodified	_TPGQPNAV_					0	0	0		CD44-PDHX|1|fusion;CD44-PDHX|3|fusion;CD44-PDHX|6|fusion;ENSG00000110435|ENST00000227868|PDHX;nc|ENSG00000110435|O00330-3|PDHX;CD44-PDHX|8|fusion;CD44-PDHX|5|fusion	CD44-PDHX|1|fusion	CD44-PDHX|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.20341009189997	2	392.20341	782.392267	1.0898	0.00042742	-2.7322	-0.0010716	-1.6424	-0.00064414	392.20220364790174	26.915	0.19301	26.915	26.843	27.036	0	1422	34	0.7617651	0.020387232	0.7617651	310.48538	0	8.309601						73	9	2	NaN	NaN	NaN	0.84455	1	4525	4525		2.7852	0	1	4922.6			26842	87	15454	15897	21402	21402					-0.007633192335333661
TPGSSPVP	8	Unmodified	_TPGSSPVP_					0	0	0		ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3777456426001	1	741.377746	740.370469	2.4035	0.0017819	6.3299	0.0046929	8.7334	0.0064747	741.3826343626446	25.563	0.096529	25.552	25.503	25.6	-0.011602	597	61	1.2639319	0.03597319	1.2624124	257.83853	0	7.3384247						79	5	2	NaN	NaN	NaN	0.84727	1	3844	3844		1.2418	0	1	5803.1			26843	5158	15455	15898	21403	21403					-0.010101239820869523
TPHDFIEHF	9	Unmodified	_TPHDFIEHF_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.513696026	3	381.513696	1141.51926	1.5409	0.00058786	-1.9493	-0.00074368	-0.40841	-0.00015581	381.5130324214142	20.165	0.1682	20.165	20.117	20.285	0	1485	49	0.72280174	0.029720247	0.72280174	439.5028	0	18.071533						215	8	3	NaN	NaN	NaN	0.028569	1	14505	14505		60.984	40.47	1	37578			26844	82	15456	15899	21404	21404					-0.045840180791856255
TPHDFIEHF	9	Unmodified	_TPHDFIEHF_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7669058057	2	571.766906	1141.51926	1.7302	0.00098925	-0.56558	-0.00032338	1.1646	0.00066587	571.7667236341805	20.165	0.14419	20.165	20.141	20.285	0	1203	70	0.8965218	0.042315364	0.8965218	363.4265	0	17.153534						246	7	3	NaN	NaN	NaN	0.030545	1	14506	14506		67.154	53.113	1	41867			26845	82	15456	15899	21405	21405					-0.045840180791856255
TPHDFIEHF	9	Unmodified	_TPHDFIEHF_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7669058057	2	571.766906	1141.51926	1.2108	0.0006923	-1.0113	-0.00057822	0.19952	0.00011408	571.7664022967793	20.237	0.096275	20.222	20.174	20.271	-0.014143	1203	91	0.8965218	0.055214822	0.89500237	363.4265	0	22.38263						249	5	3	NaN	NaN	NaN	0.064504	1	14029	14029		47.136	26.58	1	36870			26846	82	15456	15899	21406	21406					-0.045840180791856255
TPHDFIEHF	9	Unmodified	_TPHDFIEHF_					0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.513696026	3	381.513696	1141.51926	1.5396	0.00058737	-0.45283	-0.00017276	1.0867	0.00041461	381.51387698650194	20.237	0.16845	20.222	20.174	20.343	-0.014143	1485	46	0.72280174	0.027864277	0.7212823	439.5028	0	16.942993						234	8	4	NaN	NaN	NaN	0.032689	1	14030	14030		55.592	35.078	1	33929			26847	82	15456	15899	21407	21407					-0.045840180791856255
TPHDFIEHF	9	Unmodified						0	0	0		CCND1-FGF4|1|fusion;ENSG00000110092|ENST00000227507|CCND1	CCND1-FGF4|1|fusion	CCND1-FGF4|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.766906	1141.51926	1.1416	0.0006527	-5.1125	-0.0029231	-3.9709	-0.0022704	571.7641264607911	20.357	0.072266	20.343	20.319	20.391	-0.014141	1224	64	0.883646	0.03863156	0.88212657	358.20703		15.660248	0.089017	-0.0036696	-0.0071976	NaN	67.154	113	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14581			26848	82	15456	15899							-0.045840180791856255
TPHSAAAV	8	Unmodified	_TPHSAAAV_					0	0	0			REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.3889790309	1	753.388979	752.381703	1.852	0.0013953	-6.6512	-0.0050109	-4.7992	-0.0036156	753.3844351099593	28.098	0.072388	28.098	28.074	28.146	0	546	37	1.294491	0.021551609	1.294491	263.99594	0	4.395172						57	4	2	NaN	NaN	NaN	0.8439	1	4101	4101		3.1533	0.36816	1	4006.3	+		26849	13025	15457	15900	21408	21408					-0.004393018879568444
TPHSAAAV	8	Unmodified						0	0	0			REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	753.388979	752.381703	1.852	0.0013953	-6.6512	-0.0050109	-4.7992	-0.0036156	753.3844351099593	28.098	0.072388	28.098	28.074	28.146	0	546	37	1.294491	0.021551609	1.294491	263.99594		4.395172	0.0048604	0.00013799	-0.0010361	NaN	3.1533	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4006.3	+		26850	13025	15457	15900							-0.004393018879568444
TPHSAAAV	8	Unmodified						0	0	0			REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	REV__IRGQ|p.A288V|1|0.29|ENSG00000167378|chr19:43593035-43593035|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	753.388979	752.381703	1.8744	0.0014122	-6.9508	-0.0052366	-5.0763	-0.0038244	753.3832223153049	28.097	0.072399	28.088	28.064	28.137	-0.0089798	540	40	1.2980826	0.023343801	1.2965631	264.7284		4.7607117	-0.0048604	-8.7708E-05	0.0010361	NaN	3.1533	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3843.1	+		26851	13025	15457	15900							-0.004393018879568444
TPHVYERGR	9	Unmodified	_TPHVYERGR_					0	0	0		ENST00000609104.5_1_10:11531117-11531210:-|nuORF	ENST00000609104.5_1_10:11531117-11531210:-|nuORF	ENST00000609104.5_1_10:11531117-11531210:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.7912465692501	2	557.791247	1113.56794	1.2632	0.00070462	7.9142	0.0044145	9.1775	0.0051191	557.7961444094547	14.62	0.1437	14.609	14.561	14.704	-0.011218	1224	34	0.883646	0.02023995	0.88212657	358.31427	0	8.207184						110	7	3	NaN	NaN	NaN	0.51576	1	13045	13045		8.962	0.71716	1	9792			26852	7791	15458	15901	21409	21409					0.015698952805678346
TPIEREIRL	9	Unmodified	_TPIEREIRL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.224145534	3	376.224146	1125.65061	2.0092	0.0007559	-1.8442	-0.00069383	0.16499	6.2074E-05	376.2232467826717	18.77	0.095997	18.756	18.708	18.804	-0.014059	1461	31	0.7376554	0.018559039	0.73613596	448.61	0	11.286804						95	5	3	NaN	NaN	NaN	0.31471	1	13495	13495		16.226	8.4219	1	8177.8			26853	1166	15459	15902	21410	21410					0.09280792288700468
TPIEVIVVL	9	Unmodified	_TPIEVIVVL_					0	0	0		ENST00000473796.1_1_7:95214955-95221973:-|nuORF;ENSG00000004799|ENST00000005178|PDK4;ENST00000498190.1_1_7:95216954-95218999:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.6183102650001	1	982.61831	981.611034	1.1795	0.001159	0.59458	0.00058424	1.7741	0.0017432	982.6194652455181	33.962	0.12066	33.962	33.914	34.035	0	213	79	1.4926696	0.046161532	1.4926696	303.1364	0	9.374634						188	6	3	NaN	NaN	NaN	0.043119	1	7955	7955		49.833	18.272	1	25505			26854	310	15460	15903	21411	21411					0.11949272285278312
TPIEVIVVL	9	Unmodified	_TPIEVIVVL_					0	0	0		ENST00000473796.1_1_7:95214955-95221973:-|nuORF;ENSG00000004799|ENST00000005178|PDK4;ENST00000498190.1_1_7:95216954-95218999:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.6183102650001	1	982.61831	981.611034	1.1939	0.0011731	0.32322	0.0003176	1.5171	0.0014907	982.6183429923683	33.937	0.14482	33.936	33.911	34.056	-0.0012474	210	76	1.4944444	0.044374347	1.4929249	303.49683	0	9.011688						187	7	3	NaN	NaN	NaN	0.056143	1	7784	7784		44.302	5.3845	1	24729			26855	310	15460	15903	21412	21412					0.11949272285278312
TPIFLNEVL	9	Unmodified	_TPIFLNEVL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.3000501313	2	523.30005	1044.58555	1.1662	0.00061028	-0.11915	-6.2353E-05	1.0471	0.00054793	523.2999254999971	32.875	0.072388	32.872	32.848	32.92	-0.0031052	1236	46	0.876284	0.027611852	0.8747646	355.61578	0	11.205536						92	4	3	NaN	NaN	NaN	0.51576	1	10203	10203		8.962	0.67169	1	8710.8			26856	5775	15461	15904	21413	21413					0.06503797762843533
TPIFLNEVL	9	Unmodified						0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.30005	1044.58555	0.97462	0.00051002	-2.9287	-0.0015326	-1.9541	-0.0010226	523.2988649021306	32.876	0.096561	32.876	32.852	32.949	0	1236	49	0.876284	0.029451072	0.876284	355.6158		11.951904	0.0020855	-0.0011386	0.00075972	NaN	8.962	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7651			26857	5775	15461	15904							0.06503797762843533
TPINEGQTVL	10	Unmodified	_TPINEGQTVL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5680656084999	1	1071.56807	1070.56079	2.1154	0.0022668	-0.25102	-0.00026898	1.8644	0.0019978	1071.5681721515834	21.922	0.16871	21.922	21.874	22.043	0	168	85	1.5192716	0.049612284	1.5192716	308.1837	0	10.063843						391	8	4	NaN	NaN	NaN	0.0093513	1	11585	11585		72.093	34.791	1	85942			26858	3492	15462	15905	21414	21414					0.028331178894632103
TPINEGQTVL	10	Unmodified	_TPINEGQTVL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5680656084999	1	1071.56807	1070.56079	1.3657	0.0014634	-0.16776	-0.00017976	1.1979	0.0012837	1071.5680172126806	21.922	0.16856	21.908	21.86	22.028	-0.013897	168	85	1.5192716	0.049612284	1.5177522	308.1837	0	10.063843						408	8	4	NaN	NaN	NaN	0.0028528	1	11291	11291		83.13	48.676	1	86020			26859	3492	15462	15905	21415	21415					0.028331178894632103
TPIQFDIVL	9	Unmodified	_TPIQFDIVL_					0	0	0		ENST00000552945.1_1_12:105582201-105583926:-|nuORF;ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000552945.1_1_12:105582201-105583926:-|nuORF	ENST00000552945.1_1_12:105582201-105583926:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.592823796	1	1045.59282	1044.58555	1.0336	0.0010807	1.7026	0.0017803	2.7363	0.002861	1045.595669262344	33.961	0.12067	33.96	33.911	34.032	-0.0012474	117	67	1.5493695	0.038923264	1.54785	314.38843	0	7.8980713						173	6	3	NaN	NaN	NaN	0.057383	1	10205	10205		43.776	5.6448	1	14236			26860	2987	15463	15906	21416	21416					0.06503797762843533
TPISAGDLL	9	Unmodified	_TPISAGDLL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4880243735	1	886.488024	885.480748	1.9836	0.0017584	-0.75423	-0.00066861	1.2294	0.0010898	886.4871974863543	26.65	0.169	26.65	26.601	26.77	0	429	88	1.3643885	0.05188644	1.3643885	277.50076	0	10.553101						318	8	4	NaN	NaN	NaN	0.013281	1	5880	5880		82.96	27.467	1	73526			26861	1218	15464	15907	21417	21417					0.033426762862859505
TPISAGDLL	9	Unmodified	_TPISAGDLL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	886.4880243735	1	886.488024	885.480748	1.402	0.0012429	0.04873	4.3198E-05	1.4507	0.0012861	886.4883089606415	26.649	0.19308	26.639	26.614	26.808	-0.010645	429	70	1.3643885	0.041138172	1.362869	277.50073	0	8.367004						317	9	4	NaN	NaN	NaN	0.016254	1	5757	5757		76.739	32.101	1	73212			26862	1218	15464	15907	21418	21418					0.033426762862859505
TPISEHAVF	9	Unmodified	_TPISEHAVF_					0	0	0		ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1	ENSG00000133706|ENST00000394434|LARS1	ENSG00000133706|ENST00000394434|LARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.75854945735	2	500.758549	999.502546	1.54	0.00077115	-0.73584	-0.00036848	0.80412	0.00040267	501.2590384659233	19.972	0.14448	19.958	19.934	20.078	-0.014141	1311	46	0.83019954	0.027680635	0.8286801	337.11127	0	11.240021						93	7	3	NaN	NaN	NaN	0.44082	1	8385	8385		12.049	3.0867	1	6703.6			26863	2832	15465	15908	21419	21419					0.00277481034856919
TPIVERHVL	9	Unmodified	_TPIVERHVL_					0	0	0		ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.31656586275	2	532.316566	1062.61858	1.9793	0.0010536	-1.5812	-0.00084169	0.39817	0.00021195	532.3161162011805	16.302	0.14395	16.302	16.278	16.422	0	1254	46	0.8652351	0.027629793	0.8652351	351.05435	0	11.210327						185	7	3	NaN	NaN	NaN	0.045904	1	11253	11253		48.65	29.487	1	34242			26864	4323	15466	15909	21420	21420					0.0897742460556401
TPIVERHVL	9	Unmodified	_TPIVERHVL_					0	0	0		ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	ENSG00000164465|ENST00000338728|DCBLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.31656586275	2	532.316566	1062.61858	1.3488	0.00071797	-1.3685	-0.00072846	-0.019712	-1.0493E-05	532.315785512949	16.467	0.21577	16.454	16.382	16.598	-0.012995	1254	55	0.8652351	0.033157587	0.86371565	351.05435	0	13.453125						265	10	3	NaN	NaN	NaN	0.015447	1	10997	10997		77.761	34.766	1	37732			26865	4323	15466	15909	21421	21421					0.0897742460556401
TPLAETLM	8	Unmodified	_TPLAETLM_					0	0	0			REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	875.4542814041001	1	875.454281	874.447005	1.1993	0.00105	1.1458	0.0010031	2.3452	0.0020531	875.4554318726755	24.43	0.096487	24.43	24.406	24.502	0	399	55	1.382264	0.032162428	1.382264	281.1907	0	6.542755						100	5	2	NaN	NaN	NaN	0.30832	1	5732	5732		41.46	0	1	7692	+		26866	12077	15467	15910	21422	21422					0.004759315228852756
TPLAETLM	8	Unmodified						0	0	0			REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	875.454281	874.447005	1.1993	0.00105	1.1458	0.0010031	2.3452	0.0020531	875.4554318726755	24.43	0.096487	24.43	24.406	24.502	0	399	55	1.382264	0.032162428	1.382264	281.1907		6.542755	0.0064839	-1.9926E-06	0.0016531	NaN	41.46	100	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7692	+		26867	12077	15467	15910							0.004759315228852756
TPLAETLM	8	Unmodified						0	0	0			REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	875.454281	874.447005	1.299	0.0011372	1.1503	0.001007	2.4493	0.0021442	875.4557233523245	24.429	0.072418	24.417	24.393	24.465	-0.012749	402	58	1.3804773	0.03394735	1.3789579	280.82724		6.9058533	-0.0064839	1.9003E-06	-0.0016531	NaN	41.46	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6774.8	+		26868	12077	15467	15910							0.004759315228852756
TPLDEKSLAL	10	Unmodified	_TPLDEKSLAL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.8056966152	2	543.805697	1085.59684	1.3273	0.00072178	-5.9049	-0.0032111	-4.5776	-0.0024893	543.8036649408655	22.573	0.072363	22.559	22.535	22.607	-0.01354	1179	76	0.9112251	0.045945227	0.90970564	369.6139	0	18.636444						114	4	2	NaN	NaN	NaN	0.73114	1	11903	11903		5.9198	0.45392	1	15682			26869	5436	15468	15911	21423	21423					0.05746575066314108
TPLDEKSLALL	11	Unmodified	_TPLDEKSLALL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3477286054	2	600.347729	1198.6809	1.3839	0.00083081	-1.2225	-0.0007339	0.16141	9.6903E-05	600.3467928273863	26.553	0.072414	26.553	26.529	26.601	0	1116	52	0.94976085	0.031161964	0.94976085	384.78903	0	12.625061						126	4	3	NaN	NaN	NaN	0.17797	1	16435	16435		32.377	14.143	1	12555			26870	5436	15469	15912	21424	21424					0.08951106163226541
TPLGPLARV	9	Unmodified	_TPLGPLARV_					0	0	0		ENST00000448213.2_1_1:81967523-81968357:+|nuORF;ENST00000569680.1_1_15:74833658-74865607:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5672777475	1	923.567278	922.560001	-0.66487	-0.00061405	0.61922	0.00057189	-0.04565	-4.2161E-05	923.5676762887196	54.45	0.14425	54.449	54.425	54.569	-0.0006218	342	67	1.4161754	0.039226055	1.4146559	287.85645	0	7.973236						246	7	4	NaN	NaN	NaN	0.66196	1	6335	6335		2.4615	0	1	44652			26871	5148	15470	15913	21425	21425					0.09562368031083679
TPLGPLARV	9	Unmodified						0	0	0		ENST00000448213.2_1_1:81967523-81968357:+|nuORF;ENST00000569680.1_1_15:74833658-74865607:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.567278	922.560001	1.9213	0.0017744	-0.97233	-0.00089801	0.94896	0.00087643	923.5644781849693	54.524	0.024109	54.524	54.524	54.548	0	333	46	1.4215236	0.026735067	1.4215236	288.94354		5.434265	0.037374	-0.0013425	0.0034338	NaN	2.4615	52	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4530.2			26872	5148	15470	15913							0.09562368031083679
TPLHAAAA	8	Unmodified	_TPLHAAAA_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.2084954697999	2	376.208495	750.402438	1.255	0.00047213	-3.0344	-0.0011416	-1.7795	-0.00066946	376.2071912998493	26.988	0.096479	26.988	26.94	27.036	0	1437	37	0.7524962	0.022251546	0.7524962	306.93222	0	9.07605						81	5	2	NaN	NaN	NaN	0.84692	1	4067	4067		1.4396	0	1	6877.6			26873	3231	15471	15914	21426	21426					0.017252884916956646
TPLHAAAA	8	Unmodified						0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	376.208495	750.402438	1.4172	0.00053315	-4.3283	-0.0016283	-2.9111	-0.0010952	376.20683939705464	27.035	0.1207	27.025	27.001	27.122	-0.010124	1434	58	0.75435036	0.035245	0.7528309	307.68854		14.375885	0.018692	-0.00058084	0.00016738	NaN	1.4396	102	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7960.5			26874	3231	15471	15914							0.017252884916956646
TPLHEIAL	8	Unmodified	_TPLHEIAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.5090941666	1	893.509094	892.501818	1.8986	0.0016964	0.016756	1.4971E-05	1.9153	0.0017114	893.5095767722071	21.585	0.048092	21.585	21.561	21.609	0	354	49	1.4090419	0.028546333	1.4090419	286.54825	0	5.8052673						54	3	2	NaN	NaN	NaN	0.77489	1	5958	5958		12.588	3.4647	1	3695.1			26875	2966	15472	15915	21427	21427					0.05126686385801804
TPLHEIAL	8	Unmodified	_TPLHEIAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.25818531659996	2	447.258185	892.501818	1.2915	0.00057764	-2.4879	-0.0011127	-1.1963	-0.00053507	447.25693380455954	21.585	0.16855	21.571	21.523	21.691	-0.013895	1341	88	0.8117308	0.05362028	0.81021136	330.14783	0	21.808502						239	8	3	NaN	NaN	NaN	0.40747	1	5844	5844		36.036	0	1	58101			26876	2966	15472	15915	21428	21428					0.05126686385801804
TPLHEIAL	8	Unmodified						0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	893.509094	892.501818	2.1144	0.0018893	-0.16321	-0.00014583	1.9512	0.0017434	893.5077143702671	21.585	0.048101	21.571	21.571	21.619	-0.013895	360	49	1.405474	0.028540134	1.4039545	285.82266		5.8040466	-0.0069162	-4.8661E-05	-0.0025437	NaN	12.588	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3825.8			26877	2966	15472	15915							0.05126686385801804
TPLLDYAL	8	Unmodified	_TPLLDYAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.4978607782999	1	905.497861	904.490584	1.5791	0.0014299	-1.068	-0.0009671	0.51108	0.00046278	905.4964166724928	30.028	0.096533	30.021	29.997	30.094	-0.0064106	297	85	1.4428991	0.049860477	1.4413797	293.37454	0	10.137787						153	5	2	NaN	NaN	NaN	0.27223	1	6039	6039		44.302	12.741	1	16213			26878	2711	15473	15916	21429	21429					0.034518642916509634
TPLLDYAL	8	Unmodified						0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	905.497861	904.490584	2.0933	0.0018954	1.0105	0.00091505	3.1038	0.0028105	905.4986075251185	30.029	0.096594	30.029	30.004	30.101	0	297	85	1.4428991	0.049876332	1.4428991	293.37454		10.141022	0.00367	0.00087554	0.00075972	NaN	44.302	201	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16081			26879	2711	15473	15916							0.034518642916509634
TPLPEDNSM	9	Unmodified	_TPLPEDNSM_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.22368218475	2	502.223682	1002.43281	1.7578	0.00088279	1.8987	0.00095356	3.6564	0.0018363	502.72732144523775	19.54	0.11998	19.54	19.468	19.588	0	1335	34	0.8154261	0.02032113	0.8154261	331.09924	0	8.251251						74	6	2	NaN	NaN	NaN	0.2345	1	8678	8678		23.118	12.513	1	6257.1			26880	6112	15474	15917	21430	21430					-0.06830765696065555
TPLPEDNSM	9	Unmodified						0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.223682	1002.43281	1.5441	0.00077549	0.54181	0.00027211	2.0859	0.0010476	502.22479057183205	19.563	0.096294	19.549	19.5	19.597	-0.014141	1338	49	0.81357855	0.029553175	0.8120591	330.34903		11.999908	0.004229	-0.00072726	-0.0016835	NaN	23.118	92	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7335.4			26881	6112	15474	15917							-0.06830765696065555
TPLPEDNSM	9	Oxidation (M)	_TPLPEDNSM(Oxidation (M))_		TPLPEDNSM(1)		TPLPEDNSM(47)	0	0	1		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2211394958	2	510.221139	1018.42773	1.9429	0.00099131	-1.6209	-0.00082702	0.32199	0.00016429	510.22045206206985	16.398	0.11994	16.398	16.326	16.446	0	1335	46	0.8154261	0.027707577	0.8154261	331.02884	0	11.248138						150	6	3	NaN	NaN	NaN	0.048656	1	9299	9299		47.482	25.355	1	17365			26882	6112	15474	15918	21431	21431		620			-0.08075069558685755
TPLPEEFEL	9	Unmodified	_TPLPEEFEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5353684965999	1	1074.53537	1073.52809	2.1439	0.0023037	-0.42001	-0.00045132	1.7239	0.0018524	1074.5351259375507	29.884	0.21719	29.884	29.787	30.004	0	156	151	1.5263584	0.08856535	1.5263584	309.61032	0	17.964813						838	10	5	NaN	NaN	NaN	2.9468E-07	1	11709	11709		130.62	60.019	1	250730			26883	2098	15475	15919	21432	21432					-0.005730892333758675
TPLPEEFEL	9	Unmodified	_TPLPEEFEL_					0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5353684965999	1	1074.53537	1073.52809	1.6415	0.0017638	-0.20773	-0.00022322	1.4338	0.0015406	1074.5352949317403	29.883	0.26538	29.876	29.755	30.021	-0.0070667	156	142	1.5263584	0.08324695	1.5248389	309.61032	0	16.886047						815	12	5	NaN	NaN	NaN	0.00017726	1	11408	11408		118.2	47.604	1	253170			26884	2098	15475	15919	21433	21433					-0.005730892333758675
TPLPEEFEL	9	Unmodified						0	0	0		SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant;SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1074.53537	1073.52809	1.3837	0.0014868	-4.5005	-0.004836	-3.1168	-0.0033491	1074.5315331587917	29.738	0.048285	29.731	29.707	29.755	-0.0070648	156	97	1.5263584	0.05663371	1.5248389	309.61032		11.487732	-0.076376	-0.0042713	-0.00075972	NaN	130.62	106	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8030.7			26885	2098	15475	15919							-0.005730892333758675
TPLVDFLM	8	Oxidation (M)	_TPLVDFLM(Oxidation (M))_		TPLVDFLM(1)		TPLVDFLM(42)	0	0	1		ENST00000532344.1_1_11:6632867-6633324:-|nuORF;ENSG00000166337|ENST00000299424|TAF10	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.4855815325001	1	951.485582	950.478305	1.0864	0.0010337	0.94299	0.00089724	2.0294	0.001931	951.4868912705937	30.825	0.096508	30.825	30.801	30.897	0	264	91	1.4624695	0.053382277	1.4624695	297.1379	0	10.845947						168	5	3	NaN	NaN	NaN	0.3042	1	7097	7097		41.785	21.229	1	11814			26886	4471	15476	15920	21434	21434		476			0.0010850455697664074
TPLWEEPF	8	Unmodified	_TPLWEEPF_					0	0	0			REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.4880243735	1	1018.48802	1017.48075	2.7608	0.0028118	1.8832	0.001918	4.6439	0.0047298	1018.4902513102203	26.336	0.12069	26.336	26.288	26.408	0	231	76	1.4820169	0.044416666	1.4820169	300.82608	0	9.0159						160	6	3	NaN	NaN	NaN	0.77489	1	9259	9259		12.588	1.9829	1	13573	+		26887	8400	15477	15921	21435	21435					-0.027293237137200776
TPMCHLLYYEL	11	Unmodified	_TPMCHLLYYEL_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.8277915030002	2	691.827792	1381.64103	1.0073	0.00069691	-2.2315	-0.0015438	-1.2242	-0.00084693	691.8269819416225	30.872	0.19303	30.866	30.746	30.939	-0.0057545	1068	88	0.97906286	0.053078473	0.9775434	396.0622	0	21.471954						283	9	2	NaN	NaN	NaN	0.65577	1	18971	18971		10.36	0	1	37431	+		26888	10113	15478	15922	21436	21436					-0.03452480103328526
TPMFREYSL	9	Unmodified	_TPMFREYSL_					0	0	0		ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2787917604501	2	572.278792	1142.54303	1.3582	0.00077729	-2.8422	-0.0016265	-1.4839	-0.00084922	572.7778304662061	22.934	0.21698	22.921	22.848	23.065	-0.01354	1206	100	0.894683	0.06073302	0.89316356	362.67725	0	24.619324						463	10	4	NaN	NaN	NaN	0.10206	1	14063	14063		35.523	9.408	1	89074			26889	5258	15479	15923	21437	21437					-0.02253920637031115
TPMFREYSL	9	Oxidation (M)	_TPM(Oxidation (M))FREYSL_		TPM(1)FREYSL		TPM(40)FREYSL	0	0	1		ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2762490715	2	580.276249	1158.53795	1.2291	0.00071321	-1.3559	-0.0007868	-0.12682	-7.3593E-05	580.2746120975818	21.079	0.16855	21.065	21.065	21.234	-0.014004	1209	73	0.892844	0.04414797	0.8913246	361.8722	0	17.89331						282	8	3	NaN	NaN	NaN	0.071077	1	14583	14583		40.006	20.842	1	45364			26890	5258	15479	15924	21438	21438		547			-0.03498224499639946
TPMFREYSL	9	Oxidation (M)						0	0	1		ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	ENST00000554467.5_1_12:57627324-57627898:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.276249	1158.53795	1.6284	0.00094492	-0.77464	-0.00044951	0.85375	0.00049541	580.2754133768632	21.079	0.19272	21.079	21.055	21.248	0	1209	70	0.892844	0.042310774	0.892844	361.8722		17.148682	0.006864	0.00037571	0.00075972	NaN	40.006	258	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39179			26891	5258	15479	15924				547			-0.03498224499639946
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.25330529145	2	545.253305	1088.49206	1.9801	0.0010797	-2.1675	-0.0011819	-0.18745	-0.00010221	545.2518545973055	13.589	0.28827	13.589	13.493	13.781	0	1278	64	0.85049206	0.03870684	0.85049206	344.96765	0	15.69986						247	13	4	NaN	NaN	NaN	0.46215	1	12303	12303		11.17	1.5587	1	23380			26892	5351	15480	15925	21439	21439					-0.04864869681887285
TPNEERNVM	9	Unmodified	_TPNEERNVM_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.25330529145	2	545.253305	1088.49206	1.2851	0.0007007	0.19229	0.00010485	1.4774	0.00080554	545.2533066301247	13.565	0.19185	13.555	13.531	13.723	-0.010098	1275	58	0.85233563	0.035016656	0.8508162	345.71542	0	14.2030945						203	9	3	NaN	NaN	NaN	0.13999	1	11996	11996		30.035	16.572	1	21768			26893	5351	15480	15925	21440	21440					-0.04864869681887285
TPNEERNVM	9	Oxidation (M)	_TPNEERNVM(Oxidation (M))_		TPNEERNVM(1)		TPNEERNVM(56)	0	0	1		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2507626025	2	553.250763	1104.48697	1.2621	0.00069826	-1.4463	-0.00080018	-0.18422	-0.00010192	553.2495128890744	11.598	0.2881	11.59	11.47	11.758	-0.0075302	1284	85	0.8468043	0.0516119	0.8452849	343.40967	0	20.93045						287	13	3	NaN	NaN	NaN	0.032409	1	12671	12671		55.958	25.923	1	30192			26894	5351	15480	15926	21441	21441		558			-0.06109173544518853
TPNHVEHTL	9	Unmodified	_TPNHVEHTL_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2645302922501	2	524.26453	1046.51451	1.1895	0.00062359	-2.5906	-0.0013581	-1.4011	-0.00073454	524.2630339153236	12.244	0.14407	12.244	12.196	12.34	0	1293	43	0.84127116	0.02582264	0.84127116	341.3986	0	10.479187						164	7	3	NaN	NaN	NaN	0.077759	1	10477	10477		39.039	15.922	1	18144			26895	892	15481	15927	21442	21442					-0.006889022219411345
TPNHVEHTL	9	Unmodified	_TPNHVEHTL_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2645302922501	2	524.26453	1046.51451	1.0841	0.00056837	-1.2171	-0.00063809	-0.13299	-6.9719E-05	524.2648039540627	12.27	0.14389	12.261	12.213	12.357	-0.0088415	1290	40	0.84311575	0.023976922	0.8415963	342.14716	0	9.730164						155	7	3	NaN	NaN	NaN	0.034172	1	10268	10268		53.652	22.454	1	17785			26896	892	15481	15927	21443	21443					-0.006889022219411345
TPNKNNELLLK	11	Unmodified	_TPNKNNELLLK_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.36952668	2	642.369527	1282.7245	1.3639	0.00087614	-9.3598	-0.0060124	-7.9958	-0.0051363	642.3641990119856	42.626	0.11985	42.626	42.578	42.698	0	1233	55	0.87812483	0.03313607	0.87812483	355.50082	0	13.414825						115	6	3	NaN	NaN	NaN	0.75376	1	18481	18481		3.9281	0.7165	1	7324.3	+		26897	9198	15482	15928	21444	21444					0.09444715660356451
TPNKNNELLLK	11	Unmodified						0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	642.369527	1282.7245	1.3639	0.00087614	-9.3598	-0.0060124	-7.9958	-0.0051363	642.3641990119856	42.626	0.11985	42.626	42.578	42.698	0	1233	55	0.87812483	0.03313607	0.87812483	355.50082		13.414825	0	0	0	NaN	3.9281	115	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7324.3	+		26898	9198	15482	15928							0.09444715660356451
TPPFRLGG	8	Unmodified	_TPPFRLGG_					0	0	0			REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF	REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4675637029003	1	844.467564	843.460287	0.63714	0.00053804	1.1437	0.00096578	1.7808	0.0015038	844.4686201539481	20.911	0.16854	20.897	20.873	21.041	-0.014086	1308	82	0.83204526	0.04980898	0.8305259	169.35727	0	10.138275						314	8	3	NaN	NaN	NaN	0.84945	1	5179	5179		0	0	1	40287	+		26899	12881	15483	15929	21445	21445					0.03229550417154314
TPPGAGAE	8	Unmodified	_TPPGAGAE_					0	0	0		ENST00000440944.5_2_9:139243188-139244142:+|nuORF	ENST00000440944.5_2_9:139243188-139244142:+|nuORF	ENST00000440944.5_2_9:139243188-139244142:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3307954500001	1	699.330795	698.323519	1.0652	0.00074492	6.6818	0.0046728	7.747	0.0054177	699.3341443641798	28.701	0.19303	28.701	28.653	28.846	0	660	82	1.2261056	0.048722386	1.2261056	250.39568	0	9.950104						136	9	2	NaN	NaN	NaN	0.8439	1	3188	3188		3.1533	0	1	10481			26900	7004	15484	15930	21446	21446					-0.03770983533229355
TPPGALGG	8	Unmodified	_TPPGALGG_					0	0	0		ENST00000409549.5_1_2:74763909-74764026:-|nuORF	ENST00000409549.5_1_2:74763909-74764026:-|nuORF	ENST00000409549.5_1_2:74763909-74764026:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3566162700002	1	669.356616	668.34934	1.3482	0.00090239	7.2558	0.0048567	8.604	0.0057591	669.3621571512189	30.848	0.14481	30.842	30.794	30.939	-0.0057545	675	46	1.2170867	0.027068019	1.2155672	248.7681	0	5.532593						94	7	2	NaN	NaN	NaN	0.84945	1	2476	2476		0	0	1	7599.6			26901	6861	15485	15931	21447	21447					0.00189910709070773
TPPGPFGG	8	Unmodified	_TPPGPFGG_					0	0	0			REV__USP21|p.A329Cfs*20|1|0.32|ENSG00000143258|chr1:161163007-161163008|-/T|frameshift_variant	REV__USP21|p.A329Cfs*20|1|0.32|ENSG00000143258|chr1:161163007-161163008|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.3566162700001	1	729.356616	728.34934	1.1119	0.00081097	-0.5631	-0.0004107	0.54879	0.00040027	729.3555249086058	40.294	0.096081	40.301	40.205	40.301	0.0067558	684	73	1.2116731	0.043292522	1.2101537	247.25208	0	8.834213						153	5	2	NaN	NaN	NaN	0.84692	1	3660	3660		1.4396	0	1	13431	+		26902	9861	15486	15932	21448	21448					-0.025700892909412687
TPPPLGVG	8	Unmodified	_TPPPLGVG_					0	0	0			REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF	REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.4192165268003	1	737.419217	736.41194	1.2697	0.00093629	-1.0968	-0.00080882	0.17286	0.00012747	737.418570930095	29.883	0.12064	29.876	29.828	29.948	-0.0070667	633	58	1.2423272	0.034242034	1.2408078	253.45604	0	6.985977						111	6	2	NaN	NaN	NaN	0.84945	1	3789	3789		0	0	1	11407	+		26903	11141	15487	15933	21449	21449					0.03319056777252172
TPPPPPGRRD	10	Unmodified	_TPPPPPGRRD_					0	0	0			REV__ENST00000549332.1_1_5:145889637-145890202:+|nuORF	REV__ENST00000549332.1_1_5:145889637-145890202:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.8648402106667	3	363.86484	1088.57269	2.2055	0.0008025	2.0037	0.00072906	4.2091	0.0015316	363.8654876999021	11.934	0.71995	11.926	11.71	12.43	-0.0081854	1479	112	0.72651637	0.06878418	0.7249969	442.01736	0	41.848724						1619	31	5	NaN	NaN	NaN	0.01148	1	12029	12029		57.081	6.2505	1	672630	+		26904	9156	15488	15934	21450	21450					0.03194779423347427
TPPPPPGRRD	10	Unmodified						0	0	0			REV__ENST00000549332.1_1_5:145889637-145890202:+|nuORF	REV__ENST00000549332.1_1_5:145889637-145890202:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	363.86484	1088.57269	2.2055	0.0008025	2.0037	0.00072906	4.2091	0.0015316	363.8654876999021	11.934	0.71995	11.926	11.71	12.43	-0.0081854	1479	112	0.72651637	0.06878418	0.7249969	442.01736		41.848724	0.10501	-3.2057E-05	-0.00075972	NaN	57.081	1619	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	672630	+		26905	9156	15488	15934							0.03194779423347427
TPQANTGRW	9	Unmodified	_TPQANTGRW_					0	0	0		chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.75687243565	2	515.756872	1029.49919	2.3297	0.0012016	5.7244	0.0029524	8.0541	0.004154	515.7598835954914	13.541	0.12005	13.541	13.517	13.637	0	1329	70	0.81912065	0.04246199	0.81912065	332.48096	0	17.235321						198	6	3	NaN	NaN	NaN	0.11656	1	9751	9751		33.425	0.64729	1	20788			26906	152	15489	15935	21451	21451					-0.014377690191395232
TPQANTGRW	9	Unmodified						0	0	0		chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	chr7:5604034-5605272|165|64.81|0.18|8.47|+|0|None,FSCN1|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.756872	1029.49919	1.126	0.00058074	7.8123	0.0040293	8.9383	0.00461	515.7607773311621	13.541	0.1679	13.531	13.483	13.651	-0.010098	1326	73	0.8209676	0.0443058	0.81944823	333.23062		17.983704	-0.0046977	0.0011621	0.00016377	NaN	33.425	181	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22858			26907	152	15489	15935							-0.014377690191395232
TPQDHEVAL	9	Unmodified	_TPQDHEVAL_					0	0	0		nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF;ENSG00000170832|ENST00000300896|USP32	nc|ENSG00000129204|P35125-2|USP6	nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.25108856599996	2	505.251089	1008.48762	1.8134	0.0009162	-4.2415	-0.002143	-2.4281	-0.0012268	505.75053456207957	16.302	0.096012	16.302	16.278	16.374	0	1296	67	0.8394264	0.04060483	0.8394264	340.8167	0	16.486023						152	5	3	NaN	NaN	NaN	0.012861	1	8919	8919		84.233	44.774	1	26305			26908	2596	15490	15936	21452	21452					-0.016280108331443444
TPQEQVDSL	9	Unmodified	_TPQEQVDSL_					0	0	0		nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.74837870154994	2	508.748379	1015.4822	1.9521	0.00099312	-0.20786	-0.00010575	1.7442	0.00088737	508.74813454492005	19.012	0.11992	19.012	18.988	19.108	0	1314	61	0.8283535	0.036917448	0.8283535	336.28983	0	14.987549						141	6	3	NaN	NaN	NaN	0.19268	1	9186	9186		25.801	10.338	1	14415			26909	2695	15491	15937	21453	21453					-0.024917344156278887
TPQEQVDSL	9	Unmodified	_TPQEQVDSL_					0	0	0		nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	nc|ENSG00000131165|Q9HD42-2|CHMP1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.74837870154994	2	508.748379	1015.4822	1.3504	0.00068703	0.22451	0.00011422	1.5749	0.00080125	508.7491528890061	19.034	0.14415	19.02	18.996	19.14	-0.014059	1311	43	0.83019954	0.02584505	0.8286801	337.03925	0	10.492401						155	7	3	NaN	NaN	NaN	0.19268	1	9008	9008		25.801	5.3523	1	16042			26910	2695	15491	15937	21454	21454					-0.024917344156278887
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2704354121	2	531.270435	1060.52632	1.2951	0.00068804	-8.5849	-0.0045609	-7.2898	-0.0038729	531.267464399704	32.008	0.12066	32.008	31.959	32.08	0	1281	67	0.84864825	0.0405609	0.84864825	344.33325	0	16.457336						208	6	3	NaN	NaN	NaN	0.27507	1	11117	11117		20.513	8.4646	1	23736			26911	5900	15492	15938	21455	21455					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2704354121	2	531.270435	1060.52632	2.2692	0.0012056	-1.536	-0.00081601	0.73324	0.00038955	531.2699394468513	32.297	0.55502	32.297	32.104	32.659	0	1272	124	0.854179	0.07556236	0.854179	346.5773	0	30.658905						2281	24	6	NaN	NaN	NaN	0.084037	1	11123	11123		38.131	6.5698	1	2797400			26912	5900	15492	15938	21456	21456					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5335943576	1	1061.53359	1060.52632	2.2405	0.0023784	-0.030191	-3.2049E-05	2.2103	0.0023463	1061.5336819270847	32.297	0.48258	32.297	32.104	32.587	0	162	253	1.5228153	0.14890075	1.5228153	308.9397	0	30.2081						2278	21	4	NaN	NaN	NaN	8.9076E-05	1	11124	11124		123.58	59.846	1	1278800			26913	5900	15492	15938	21457	21457					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1061.5335943576	1	1061.53359	1060.52632	1.5046	0.0015972	0.81223	0.00086221	2.3168	0.0024594	1061.5342287737692	32.273	0.12068	32.273	32.225	32.345	0	660	154	1.2261056	0.09194279	1.2261056	248.74498	0	18.652802						240	6	2	NaN	NaN	NaN	0.028404	1	11125	11125		61.199	23.068	1	17246			26914	5900	15492	15938	21458	21458					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2704354121	2	531.270435	1060.52632	1.5686	0.00083337	-1.6622	-0.00088306	-0.093533	-4.9691E-05	531.2697892551606	32.296	0.62744	32.292	32.075	32.703	-0.0037613	1269	145	0.8560222	0.088496745	0.85450274	347.32513	0	35.90695						2136	27	5	NaN	NaN	NaN	0.054111	1	10872	10872		45.165	13.604	1	2760600			26915	5900	15492	15938	21459	21459					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5335943576	1	1061.53359	1060.52632	0.96229	0.0010215	-0.17441	-0.00018514	0.78789	0.00083637	1061.5337448651171	32.272	0.096561	32.268	32.22	32.316	-0.0037613	660	112	1.2261056	0.0666821	1.2245861	248.745	0	13.528076						214	5	2	NaN	NaN	NaN	0.090258	1	10873	10873		37.231	18.113	1	15207			26916	5900	15492	15938	21460	21460					-0.0015242152298924339
TPQFPDMIL	9	Unmodified	_TPQFPDMIL_					0	0	0		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1061.5335943576	1	1061.53359	1060.52632	1.8554	0.0019695	-0.53695	-0.00057	1.3184	0.0013995	1061.53316636374	32.296	0.5309	32.292	32.051	32.582	-0.0037613	162	277	1.5228153	0.16315114	1.5212959	308.9397	0	33.09912						2250	23	4	NaN	NaN	NaN	0.0021374	1	10874	10874		110.61	55.014	1	1265500			26917	5900	15492	15938	21461	21461					-0.0015242152298924339
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(41)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.26789272315	2	539.267893	1076.52123	2.59	0.0013967	-1.0118	-0.00054563	1.5782	0.00085107	539.266906837352	28.75	0.60334	28.75	28.532	29.136	0	1284	160	0.8468043	0.097667634	0.8468043	343.5196	0	39.620422						3120	26	6	NaN	NaN	NaN	0.064504	1	11821	11821		40.957	17.622	1	4645900			26918	5900	15492	15939	21462	21462		603			-0.013967253856208117
TPQFPDMIL	9	Oxidation (M)	_TPQFPDM(Oxidation (M))IL_		TPQFPDM(1)IL		TPQFPDM(41)IL	0	0	1		ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENST00000513060.5_1_5:180669121-180670896:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.26789272315	2	539.267893	1076.52123	2.3609	0.0012731	-0.67892	-0.00036612	1.682	0.00090702	539.2671931222311	28.773	0.55502	28.765	28.547	29.102	-0.0083504	1281	151	0.84864825	0.09212434	0.8471288	344.26764	0	37.371704						2740	24	5	NaN	NaN	NaN	0.064504	1	11508	11508		40.957	17.622	1	4453700			26919	5900	15492	15939	21463	21463		603			-0.013967253856208117
TPQLFICFD	9	Unmodified	_TPQLFICFD_					0	0	0			REV__nc|ENSG00000084112|Q8WYL5-5|SSH1	REV__nc|ENSG00000084112|Q8WYL5-5|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2626103800001	2	542.26261	1082.51067	1.3966	0.00075732	-4.1786	-0.0022659	-2.782	-0.0015086	542.2601689490003	32.273	0.24131	32.273	32.201	32.442	0	1254	88	0.8652351	0.053458035	0.8652351	350.97183	0	21.6846						444	11	2	NaN	NaN	NaN	0.38313	1	12081	12081		14.425	1.4222	1	91444	+		26920	13090	15493	15940	21464	21464					-0.02728708040035599
TPQLFICFD	9	Unmodified						0	0	0			REV__nc|ENSG00000084112|Q8WYL5-5|SSH1	REV__nc|ENSG00000084112|Q8WYL5-5|SSH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	542.26261	1082.51067	1.3966	0.00075732	-4.1786	-0.0022659	-2.782	-0.0015086	542.2601689490003	32.273	0.24131	32.273	32.201	32.442	0	1254	88	0.8652351	0.053458035	0.8652351	350.97183		21.6846	-0.021712	1.4635E-05	0.00075972	NaN	14.425	444	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91444	+		26921	13090	15493	15940							-0.02728708040035599
TPQPLVRF	8	Unmodified	_TPQPLVRF_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.27945207495003	2	479.279452	956.544351	1.5969	0.00076536	-5.316	-0.0025478	-3.7191	-0.0017825	479.2767336637025	28.918	0.36199	28.909	28.668	29.03	-0.0083504	1272	151	0.854179	0.09208453	0.8526596	347.05984	0	37.414673						968	16	4	NaN	NaN	NaN	0.8439	1	7118	7118		3.1533	0	1	202690	+		26922	9345	15494	15941	21465	21465					0.0643408151404401
TPSAPGAC	8	Unmodified	_TPSAPGAC_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3079515179	1	703.307952	702.300675	0.97756	0.00068752	1.7582	0.0012366	2.7358	0.0019241	703.3089015386212	29.4	0.19304	29.393	29.296	29.489	-0.0077209	1068	34	0.97906286	0.020128906	0.9775434	199.92279	0	4.1102753						81	9	2	NaN	NaN	NaN	0.84207	1	3195	3195		3.5732	0	1	6999.7			26923	3871	15495	15942	21466	21466					-0.0623832592235658
TPSDIFMVM	9	Oxidation (M)	_TPSDIFMVM(Oxidation (M))_		TPSDIFMVM(1)		TPSDIFM(-37)VM(37)	0	0	1		ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	ENSG00000132356|ENST00000397128|PRKAA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.4740305682	1	1056.47403	1055.46675	1.3475	0.0014236	-1.0501	-0.0011094	0.2974	0.0003142	1056.472841854174	27.397	0.12068	27.387	27.363	27.484	-0.010126	186	85	1.5086359	0.04962802	1.5071164	306.0819	0	10.068878						197	6	3	NaN	NaN	NaN	0.023074	1	10635	10635		68.108	44.774	2	14608			26924	2750	15496	15943	21467	21467		319			-0.05876060528657945
TPSFAAVAL	9	Unmodified	_TPSFAAVAL_					0	0	0			REV__ENST00000448359.1_1_2:111140584-111140734:-|nuORF	REV__ENST00000448359.1_1_2:111140584-111140734:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.4825450651	1	876.482545	875.475269	0.91313	0.00080034	-0.093761	-8.218E-05	0.81937	0.00071816	876.4818842463388	29.062	0.096523	29.055	29.031	29.127	-0.0077209	378	82	1.3947657	0.048230886	1.3932463	283.72873	0	9.81131						174	5	2	NaN	NaN	NaN	0.14301	1	5608	5608		29.598	4.6373	1	22275	+		26925	12220	15497	15944	21468	21468					0.032549974944686255
TPSFLEEVL	9	Unmodified	_TPSFLEEVL_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5404538745	1	1034.54045	1033.53318	0.99436	0.0010287	5.9546	0.0061602	6.9489	0.0071889	1034.5468141608947	32.827	0.072384	32.824	32.776	32.848	-0.0031052	159	88	1.5245869	0.051392436	1.5230675	309.40283	0	10.4296875						118	4	2	NaN	NaN	NaN	0.10956	1	9723	9723		34.439	9.4778	1	19858			26926	5971	15498	15945	21469	21469					0.017752146292423276
TPSFQGHEFW	10	Unmodified	_TPSFQGHEFW_					0	0	0			REV__ENST00000512467.5_1_5:143553879-143554005:+|nuORF	REV__ENST00000512467.5_1_5:143553879-143554005:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.2776376675	2	618.277638	1234.54072	1.0597	0.00065518	-10.098	-0.0062431	-9.038	-0.005588	618.2716468959976	21.537	0.12055	21.523	21.45	21.571	-0.014004	1173	82	0.91489893	0.049583375	0.9133795	370.54245	0	20.081726						146	6	2	NaN	NaN	NaN	0.60686	1	16652	16652		14.425	0.96197	1	14232	+		26927	12564	15499	15946	21470	21470					-0.06716633050496057
TPSPDASTSL	10	Unmodified	_TPSPDASTSL_					0	0	0		nc|ENSG00000118518|Q9NTX7-2|RNF146;ENSG00000118518|ENST00000368314|RNF146	nc|ENSG00000118518|Q9NTX7-2|RNF146	nc|ENSG00000118518|Q9NTX7-2|RNF146	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4629318350002	1	975.462932	974.455655	2.4486	0.0023886	-4.0091	-0.0039107	-1.5604	-0.0015222	975.4576924701132	18.077	0.071934	18.077	18.029	18.101	0	345	43	1.4143922	0.02496469	1.4143922	287.2688	0	5.0704346						64	4	2	NaN	NaN	NaN	0.70677	1	7729	7729		7.5876	0.72439	1	3777.4			26928	2182	15500	15947	21471	21471					-0.03259423306928966
TPSPDIIVL	9	Unmodified	_TPSPDIIVL_					0	0	0		GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant;GATAD2B|p.S250Rfs*13|1|0.1|ENSG00000143614|chr1:153817524-153817525|-/GCCCT|frameshift_variant;ENSG00000143614|ENST00000368655|GATAD2B	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.5506246303001	1	954.550625	953.543348	1.882	0.0017965	-0.73947	-0.00070586	1.1426	0.0010906	954.5502546172705	29.836	0.16893	29.836	29.787	29.956	0	264	97	1.4624695	0.056928873	1.4624695	297.12427	0	11.56604						447	8	5	NaN	NaN	NaN	0.055351	1	7175	7175		44.638	16.85	1	100380			26929	3440	15501	15948	21472	21472					0.06471822354478718
TPSPDIIVL	9	Unmodified	_TPSPDIIVL_					0	0	0		GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant;GATAD2B|p.S250Rfs*13|1|0.1|ENSG00000143614|chr1:153817524-153817525|-/GCCCT|frameshift_variant;ENSG00000143614|ENST00000368655|GATAD2B	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.5506246303001	1	954.550625	953.543348	1.3891	0.0013259	-0.10453	-9.9776E-05	1.2846	0.0012262	954.550249390282	29.835	0.19303	29.828	29.779	29.972	-0.0070667	264	100	1.4624695	0.058704853	1.46095	297.12427	0	11.926849						392	9	3	NaN	NaN	NaN	0.014046	1	7031	7031		80.639	33.598	1	103760			26930	3440	15501	15948	21473	21473					0.06471822354478718
TPSPSADLL	9	Unmodified	_TPSPSADLL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;ENST00000600466.1_1_19:50304984-50305399:+|nuORF;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4672889314	1	900.467289	899.460012	1.9605	0.0017654	-1.0476	-0.0009433	0.91297	0.0008221	900.4668866661638	23.513	0.12051	23.513	23.465	23.586	0	387	55	1.389409	0.03214538	1.389409	282.52243	0	6.536438						160	6	3	NaN	NaN	NaN	0.030391	1	6053	6053		58.599	24.16	1	17458			26931	5667	15502	15949	21474	21474					0.006260859066173907
TPSPSADLL	9	Unmodified	_TPSPSADLL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF;ENST00000600466.1_1_19:50304984-50305399:+|nuORF;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4672889314	1	900.467289	899.460012	2.0701	0.0018641	-0.88783	-0.00079946	1.1823	0.0010646	900.466046184436	23.513	0.12063	23.5	23.451	23.572	-0.013294	384	52	1.3911947	0.030357838	1.3896753	282.88556	0	6.1729736						146	6	3	NaN	NaN	NaN	0.025843	1	5938	5938		64.55	17.414	1	16756			26932	5667	15502	15949	21475	21475					0.006260859066173907
TPSSDVLVF	9	Unmodified	_TPSSDVLVF_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;ENST00000398588.2_1_6:58446590-58447106:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890598001	1	964.498589	963.491313	1.7835	0.0017202	-1.5435	-0.0014887	0.24004	0.00023151	964.497029635201	28.315	0.16888	28.315	28.291	28.46	0	276	64	1.4553556	0.03735757	1.4553556	295.6355	0	7.588684						237	8	3	NaN	NaN	NaN	0.20577	1	7432	7432		24.961	4.4056	1	40126			26933	1360;4142	15503	15950	21476	21476					0.008106589407248066
TPSSDVLVF	9	Unmodified	_TPSSDVLVF_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;ENST00000398588.2_1_6:58446590-58447106:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890598001	1	964.498589	963.491313	1.0991	0.0010601	-1.3485	-0.0013006	-0.24937	-0.00024052	964.4973300080009	28.339	0.1448	28.33	28.281	28.426	-0.0089779	276	64	1.4553556	0.0373497	1.4538362	295.6355	0	7.5870667						216	7	3	NaN	NaN	NaN	0.062072	1	7280	7280		41.785	10.993	1	37429			26934	1360;4142	15503	15950	21477	21477					0.008106589407248066
TPSSLDPFF	9	Unmodified	_TPSSLDPFF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.4829389956001	1	1010.48294	1009.47566	1.4536	0.0014688	0.67495	0.00068202	2.1285	0.0021508	1010.484451701971	30.92	0.096573	30.915	30.867	30.964	-0.0050716	216	64	1.4908947	0.037282348	1.4893752	302.66022	0	7.568512						134	5	2	NaN	NaN	NaN	0.14301	1	8778	8778		29.598	15.173	1	11772			26935	995	15504	15951	21478	21478					-0.02869627576330913
TPSSLDPFF	9	Unmodified						0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1010.48294	1009.47566	1.0701	0.0010813	3.2739	0.0033082	4.3439	0.0043895	1010.4855959053303	30.922	0.07238	30.922	30.897	30.97	0	219	61	1.4891195	0.03550887	1.4891195	302.29984		7.208496	0.0030598	0.0013615	-0.00012786	NaN	29.598	97	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7317.1			26936	995	15504	15951							-0.02869627576330913
TPSSYIETL	9	Unmodified	_TPSSYIETL_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5040683682001	1	1010.50407	1009.49679	1.4214	0.0014364	-5.8489	-0.0059104	-4.4275	-0.004474	1010.4962574757136	24.526	0.19291	24.526	24.502	24.695	0	219	109	1.4891195	0.06396353	1.4891195	302.29977	0	12.984955						299	9	3	NaN	NaN	NaN	0.23112	1	8953	8953		23.334	1.4994	1	28678			26937	5928	15505	15952	21479	21479					-0.00757662267460546
TPSSYIETL	9	Unmodified	_TPSSYIETL_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5040683682001	1	1010.50407	1009.49679	1.4934	0.0015091	-4.6916	-0.0047409	-3.1981	-0.0032317	1010.4975197579219	24.526	0.16888	24.514	24.489	24.658	-0.012392	216	109	1.4908947	0.06397033	1.4893752	302.66016	0	12.986328						290	8	3	NaN	NaN	NaN	0.094712	1	8784	8784		36.586	0	1	25886			26938	5928	15505	15952	21480	21480					-0.00757662267460546
TPSVHEPVL	9	Unmodified	_TPSVHEPVL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.76637448945	2	489.766374	977.518196	2.0939	0.0010255	-2.3039	-0.0011284	-0.21003	-0.00010286	489.76498938066334	19.06	0.14388	19.06	19.012	19.156	0	1314	79	0.8283535	0.048008323	0.8283535	336.4644	0	19.500244						383	7	4	NaN	NaN	NaN	0.011942	1	7822	7822		87.021	45.236	1	100140			26939	2581	15506	15953	21481	21481					0.028537675519032746
TPSVHEPVL	9	Unmodified	_TPSVHEPVL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.76637448945	2	489.766374	977.518196	1.4123	0.00069169	-1.2644	-0.00061924	0.14793	7.245E-05	489.76562277876576	19.082	0.16824	19.068	19.044	19.212	-0.014059	1314	91	0.8283535	0.055406213	0.8268341	336.4644	0	22.505157						337	8	4	NaN	NaN	NaN	0.028349	1	7660	7660		61.271	31.673	1	92730			26940	2581	15506	15953	21482	21482					0.028537675519032746
TPSVSFNQI	9	Unmodified	_TPSVSFNQI_					0	0	0			REV__NUFIP2|p.S373F|1|0.21|ENSG00000108256|chr17:29286876-29286876|G/A|missense_variant	REV__NUFIP2|p.S373F|1|0.21|ENSG00000108256|chr17:29286876-29286876|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.7560067684	2	496.756007	991.497461	1.1864	0.00058935	-3.6694	-0.0018228	-2.483	-0.0012335	496.7538000218381	21.537	0.12055	21.523	21.45	21.571	-0.014004	1305	73	0.83389086	0.04431057	0.8323714	338.6473	0	17.994751						133	6	2	NaN	NaN	NaN	0.40649	1	8095	8095		13.463	0.46021	1	16314	+		26941	13275	15507	15954	21483	21483					0.001371771722460835
TPTGYIESL	9	Unmodified	_TPTGYIESL_					0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;NAP1L1|p.A93Vfs*45|1|0.16|ENSG00000187109|chr12:76060181-76060208|AGATCGTGAACTTCCTCATAGAATTTGG/-|frameshift_variant	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4935036819	1	980.493504	979.486227	1.6774	0.0016447	-0.025524	-2.5026E-05	1.6519	0.0016197	980.492470510568	24.574	0.072407	24.562	24.538	24.61	-0.012392	267	55	1.4606913	0.032009006	1.4591719	296.65106	0	6.5006714						102	4	2	NaN	NaN	NaN	0.028349	1	7698	7698		61.271	21.117	1	11371			26942	5495	15508	15955	21484	21484					-0.004336449219067617
TPTLAMAAL	9	Unmodified	_TPTLAMAAL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	888.4859158835001	1	888.485916	887.478639	2.0549	0.0018258	0.41493	0.00036866	2.4698	0.0021944	888.4859733501188	30.004	0.072397	30.004	29.98	30.053	0	333	73	1.4215236	0.042787552	1.4215236	289.11142	0	8.702179						121	4	2	NaN	NaN	NaN	0.12945	1	5910	5910		31.561	0	1	12579	+		26943	11073	15509	15956	21485	21485					0.03039924276822603
TPTLAMAAL	9	Unmodified						0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	888.485916	887.478639	2.0549	0.0018258	0.41493	0.00036866	2.4698	0.0021944	888.4859733501188	30.004	0.072397	30.004	29.98	30.053	0	333	73	1.4215236	0.042787552	1.4215236	289.11142		8.702179	0.0036629	-0.00012092	-0.00013145	NaN	31.561	121	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12579	+		26944	11073	15509	15956							0.03039924276822603
TPTLAMAAL	9	Unmodified						0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	888.485916	887.478639	1.235	0.0010973	0.68388	0.00060761	1.9189	0.0017049	888.4863518335778	30.004	0.09656	29.997	29.973	30.07	-0.0064106	330	58	1.4233059	0.03387165	1.4217864	289.4739		6.888855	-0.0036629	0.00011804	0.00013145	NaN	31.561	121	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11537	+		26945	11073	15509	15956							0.03039924276822603
TPTQAVAVP	9	Unmodified	_TPTQAVAVP_					0	0	0			REV__ENST00000575434.4_1_17:7293990-7296186:-|nuORF	REV__ENST00000575434.4_1_17:7293990-7296186:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	442.24781759555	2	442.247818	882.481082	1.2236	0.00054115	-1.8817	-0.00083218	-0.65807	-0.00029103	442.2469048136803	15.316	0.11985	15.304	15.28	15.4	-0.012202	1329	40	0.81912065	0.024015844	0.8176012	333.21075	0	9.76944						105	6	2	NaN	NaN	NaN	0.16939	1	5712	5712		27.296	1.4953	1	13585	+		26946	12847	15510	15957	21486	21486					0.0351409600613124
TPTQAVAVP	9	Unmodified						0	0	0			REV__ENST00000575434.4_1_17:7293990-7296186:-|nuORF	REV__ENST00000575434.4_1_17:7293990-7296186:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	442.247818	882.481082	1.2236	0.00054115	-1.8817	-0.00083218	-0.65807	-0.00029103	442.2469048136803	15.316	0.11985	15.304	15.28	15.4	-0.012202	1329	40	0.81912065	0.024015844	0.8176012	333.21075		9.76944	-0.0068379	0.0007282	-0.00075972	NaN	27.296	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13585	+		26947	12847	15510	15957							0.0351409600613124
TPTRASPQL	9	Unmodified	_TPTRASPQL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.76944849465	2	485.769448	969.524344	3.0052	0.0014598	-8.2816	-0.0040229	-5.2764	-0.0025631	485.76547351867146	14.237	0.095832	14.225	14.201	14.297	-0.011218	1350	25	0.80618626	0.0147894025	0.8046668	327.49786	0	6.007904						30	5	2	NaN	NaN	NaN	0.44082	1	7453	7453		12.049	1.4437	1	1667.7			26948	4223	15511	15958	21487	21487					0.03836285783427229
TPTSVLDYF	9	Unmodified	_TPTSVLDYF_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.75821510635	2	521.758215	1041.50188	0.84625	0.00044154	-0.26057	-0.00013595	0.58569	0.00030559	521.7575249049146	31.259	0.21716	31.259	31.211	31.428	0	1293	79	0.84127116	0.04797715	0.84127116	341.41992	0	19.470978						466	10	4	NaN	NaN	NaN	0.056143	1	10265	10265		44.302	12.741	1	76529			26949	508	15512	15959	21488	21488					-0.017213584048704433
TPTSVLDYF	9	Unmodified	_TPTSVLDYF_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5091537460999	1	1042.50915	1041.50188	1.0168	0.0010601	0.49953	0.00052076	1.5164	0.0015808	1042.5098238344474	31.258	0.1448	31.253	31.205	31.35	-0.0050716	168	91	1.5192716	0.053150415	1.5177522	308.29306	0	10.78537						261	7	2	NaN	NaN	NaN	0.032764	1	10061	10061		55.494	39.077	1	46470			26950	508	15512	15959	21489	21489					-0.017213584048704433
TPTSVLDYF	9	Unmodified	_TPTSVLDYF_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.75821510635	2	521.758215	1041.50188	1.1058	0.00057695	0.43878	0.00022893	1.5446	0.00080589	521.7576400652443	31.258	0.26545	31.253	31.205	31.47	-0.0050716	1290	82	0.84311575	0.049814403	0.8415963	342.16852	0	20.216553						555	12	4	NaN	NaN	NaN	0.094712	1	10062	10062		36.586	13.252	1	87829			26951	508	15512	15959	21490	21490					-0.017213584048704433
TPTSVLDYF	9	Unmodified						0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;ENST00000504849.5_1_4:39324953-39367861:-|nuORF	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1042.50915	1041.50188	0.93519	0.00097494	0.4169	0.00043462	1.3521	0.0014096	1042.5088717584395	31.259	0.24133	31.259	31.163	31.404	0	168	109	1.5192716	0.06376016	1.5192716	308.29306		12.938324	0.0030465	-4.4534E-05	0.00075972	NaN	55.494	325	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52886			26952	508	15512	15959							-0.017213584048704433
TPTTIPDGM	9	Oxidation (M)	_TPTTIPDGM(Oxidation (M))_		TPTTIPDGM(1)		TPTTIPDGM(47)	0	0	1		nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4342742435001	1	948.434274	947.426998	2.0173	0.0019133	-2.107	-0.0019983	-0.08969	-8.5065E-05	948.4323643618611	17.597	0.095921	17.597	17.573	17.669	0	393	49	1.3858368	0.028579712	1.3858368	281.58102	0	5.8069763						94	5	2	NaN	NaN	NaN	0.04947	1	7007	7007		47.136	25.009	1	7231.1			26953	809	15513	15960	21491	21491		83			-0.04881864207732178
TPTTIPDGM	9	Oxidation (M)	_TPTTIPDGM(Oxidation (M))_		TPTTIPDGM(1)		TPTTIPDGM(65)	0	0	1		nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4342742435001	1	948.434274	947.426998	2.158	0.0020467	-1.2197	-0.0011568	0.93826	0.00088988	948.4339740020898	17.594	0.047947	17.58	17.556	17.604	-0.013567	393	49	1.3858368	0.028579712	1.3843174	281.58102	0	5.8069763						60	3	2	NaN	NaN	NaN	0.025843	1	6876	6876		64.55	20.303	1	4973.1			26954	809	15513	15960	21492	21492		83			-0.04881864207732178
TPTTIPDGM	9	Oxidation (M)	_TPTTIPDGM(Oxidation (M))_		TPTTIPDGM(1)		TPTTIPDGM(47)	0	0	1		nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	nc|ENSG00000073282|Q9H3D4-8|TP63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4342742435001	1	948.434274	947.426998	2.0397	0.0019345	-0.64142	-0.00060835	1.3983	0.0013262	948.4346759726544	17.498	0.072023	17.484	17.46	17.532	-0.013569	393	55	1.3858368	0.03214538	1.3843174	281.58102	0	6.531433						85	4	2	NaN	NaN	NaN	0.04947	1	6877	6877		47.136	15.575	1	6014.9			26955	809	15513	15960	21493	21493		83			-0.04881864207732178
TPVDDPMSL	9	Unmodified	_TPVDDPMSL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4499243077001	1	974.449924	973.442648	1.7546	0.0017098	-0.43992	-0.00042868	1.3147	0.0012811	974.4492682163357	24.84	0.12065	24.84	24.791	24.912	0	273	88	1.4571344	0.051605582	1.4571344	295.95416	0	10.481445						272	6	4	NaN	NaN	NaN	0.019103	1	7693	7693		73.133	42.523	1	22678			26956	2034	15514	15961	21494	21494					-0.04513577690681814
TPVDDPMSL	9	Unmodified	_TPVDDPMSL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4499243077001	1	974.449924	973.442648	1.5091	0.0014705	1.3918	0.0013563	2.9009	0.0028268	974.4516367041609	24.84	0.12063	24.827	24.779	24.9	-0.012392	270	85	1.458913	0.04982865	1.4573935	296.3154	0	10.120544						238	6	3	NaN	NaN	NaN	0.030669	1	7544	7544		58.235	31.504	1	17991			26957	2034	15514	15961	21495	21495					-0.04513577690681814
TPVDDPMSL	9	Oxidation (M)	_TPVDDPM(Oxidation (M))SL_		TPVDDPM(1)SL		TPVDDPM(73)SL	0	0	1		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4448389298002	1	990.444839	989.437562	2.292	0.0022701	1.5967	0.0015814	3.8887	0.0038515	990.4462172872176	19.876	0.14422	19.876	19.804	19.948	0	264	97	1.4624695	0.056941032	1.4624695	296.97073	0	11.5625305						213	7	2	NaN	NaN	NaN	0.019103	1	8179	8179		73.133	40.68	1	20359			26958	2034	15514	15962	21496	21496		230			-0.05757881553290645
TPVDDPMSL	9	Oxidation (M)	_TPVDDPM(Oxidation (M))SL_		TPVDDPM(1)SL		TPVDDPM(67)SL	0	0	1		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4448389298002	1	990.444839	989.437562	1.7582	0.0017414	0.036967	3.6614E-05	1.7951	0.001778	990.4457733041377	19.876	0.12026	19.861	19.789	19.909	-0.014141	261	82	1.4642475	0.04803121	1.462728	297.3318	0	9.753265						193	6	3	NaN	NaN	NaN	0.023828	1	8014	8014		67.154	32.715	1	14756			26959	2034	15514	15962	21497	21497		230			-0.05757881553290645
TPVDDPMSLL	10	Unmodified	_TPVDDPMSLL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2706323773501	2	544.270632	1086.52671	0.60278	0.00032807	-2.4468	-0.0013317	-1.844	-0.0010036	544.2705632865377	31.356	0.096535	31.356	31.308	31.404	0	1272	58	0.854179	0.03502047	0.854179	346.47095	0	14.204956						129	5	3	NaN	NaN	NaN	0.44258	1	12243	12243		21.835	12.089	1	15456			26960	2034	15515	15963	21498	21498					-0.013090465937693807
TPVDDPMSLL	10	Unmodified	_TPVDDPMSLL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5339882881	1	1087.53399	1086.52671	1.0104	0.0010988	-1.4052	-0.0015282	-0.3948	-0.00042936	1087.5325545667054	31.356	0.12066	31.356	31.308	31.428	0	138	91	1.5369828	0.05309403	1.5369828	311.71808	0	10.768097						208	6	3	NaN	NaN	NaN	0.27719	1	12245	12245		28.896	7.0606	1	16450			26961	2034	15515	15963	21499	21499					-0.013090465937693807
TPVDDPMSLL	10	Unmodified	_TPVDDPMSLL_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.5339882881	1	1087.53399	1086.52671	0.71759	0.00078041	0.19677	0.00021399	0.91436	0.0009944	1087.534164065882	31.355	0.21716	31.35	31.205	31.422	-0.0050716	135	85	1.5387528	0.04952824	1.5372335	312.07706	0	10.044922						214	10	2	NaN	NaN	NaN	0.01359	1	11930	11930		66.656	34.204	1	19182			26962	2034	15515	15963	21500	21500					-0.013090465937693807
TPVDDRISL	9	Unmodified	_TPVDDRISL_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.27456366230007	2	508.274564	1014.53457	1.7157	0.00087206	2.7212	0.0013831	4.4369	0.0022552	508.27465626833396	20.622	0.24077	20.622	20.501	20.742	0	1308	82	0.83204526	0.049819708	0.83204526	337.7928	0	20.225769						522	11	5	NaN	NaN	NaN	0.044153	1	9156	9156		49.394	16.941	1	120730			26963	672	15516	15964	21501	21501					0.027888487180121047
TPVDFFFEF	9	Unmodified	_TPVDFFFEF_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34787807-34788098:+|nuORF;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1148.5298891882	1	1148.52989	1147.52261	1.8419	0.0021155	-0.47004	-0.00053985	1.3719	0.0015757	1148.5291039602407	39.02	0.096142	39.02	38.972	39.068	0	63	46	1.5811787	0.026483893	1.5811787	320.4676	0	5.3676453						91	5	2	NaN	NaN	NaN	0.032764	1	14713	14713		55.494	18.907	1	6120			26964	840	15517	15965	21502	21502					-0.04524768025180492
TPVEEVEAL	9	Unmodified	_TPVEEVEAL_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5040683681999	1	986.504068	985.496792	1.7988	0.0017745	-0.97453	-0.00096138	0.8243	0.00081317	986.5051471234353	24.164	0.14489	24.164	24.092	24.237	0	279	76	1.4535767	0.04447806	1.4535767	295.18118	0	9.032257						244	7	3	NaN	NaN	NaN	0.055351	1	8060	8060		44.638	15.04	1	28439			26965	1657	15518	15966	21503	21503					0.003463377325147121
TPVFIFERL	9	Unmodified	_TPVFIFERL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.32131688965	2	561.321317	1120.62808	1.3313	0.00074728	-2.3507	-0.0013195	-1.0194	-0.0005722	561.3198323823522	29.087	0.14479	29.079	29.031	29.175	-0.0077229	1194	70	0.902037	0.042274177	0.9005176	365.7436	0	17.140656						328	7	4	NaN	NaN	NaN	0.028404	1	13314	13314		61.199	29.523	1	124550			26966	2533	15519	15967	21504	21504					0.07259192891069688
TPVFIFERL	9	Unmodified						0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.321317	1120.62808	1.7309	0.00097161	-1.7787	-0.00099845	-0.04781	-2.6837E-05	561.3203279196418	29.063	0.12066	29.063	29.015	29.136	0	1194	70	0.902037	0.042269647	0.902037	365.7436		17.138824	-0.0078101	0.0002783	0.00075972	NaN	61.199	260	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117900			26967	2533	15519	15967							0.07259192891069688
TPVGDVFEL	9	Unmodified	_TPVGDVFEL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4985890598001	1	976.498589	975.491313	2.0903	0.0020411	-1.5506	-0.0015141	0.53968	0.000527	976.4962015203464	30.029	0.072445	30.029	30.004	30.077	0	282	61	1.4517976	0.03558433	1.4517976	294.8616	0	7.2272034						114	4	2	NaN	NaN	NaN	0.036546	1	7760	7760		52.624	29.29	1	9102.3			26968	2190	15520	15968	21505	21505					0.002586589407201245
TPVGDVFEL	9	Unmodified	_TPVGDVFEL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4985890598001	1	976.498589	975.491313	1.461	0.0014267	-0.38644	-0.00037736	1.0746	0.0010493	976.4975805703058	30.028	0.072428	30.021	29.997	30.07	-0.0064106	282	55	1.4517976	0.032025933	1.4502782	294.8616	0	6.504486						100	4	2	NaN	NaN	NaN	0.14301	1	7603	7603		29.598	10.48	1	8905			26969	2190	15520	15968	21506	21506					0.002586589407201245
TPVGKDPGL	9	Unmodified	_TPVGKDPGL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.24781759555	2	442.247818	882.481082	1.0936	0.00048362	-3.1473	-0.0013919	-2.0538	-0.00090827	442.2464283513251	15.318	0.12013	15.318	15.294	15.414	0	1329	91	0.81912065	0.055466294	0.81912065	333.21075	0	22.563171						147	6	2	NaN	NaN	NaN	0.23499	1	5834	5834		23.086	5.1161	1	16652			26970	1766	15521	15969	21507	21507					0.0351409600613124
TPVGSSYGDLL	11	Unmodified	_TPVGSSYGDLL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.5520811933	1	1108.55208	1107.5448	2.2877	0.002536	-0.93598	-0.0010376	1.3517	0.0014984	1108.550817098788	26.07	0.14481	26.07	26.046	26.191	0	72	97	1.5758814	0.056567788	1.5758814	319.53107	0	11.469879						279	7	3	NaN	NaN	NaN	0.073891	1	13172	13172		43.776	24.439	1	32521			26971	3708	15522	15970	21508	21508					-0.00466588347421748
TPVGSSYGDLL	11	Unmodified	_TPVGSSYGDLL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.5520811933	1	1108.55208	1107.5448	1.8554	0.0020568	-0.19747	-0.0002189	1.6579	0.0018379	1108.5514870276495	26.094	0.1207	26.083	26.035	26.156	-0.011137	72	100	1.5758814	0.058326244	1.5743619	319.53107	0	11.826447						270	6	3	NaN	NaN	NaN	0.085722	1	12799	12799		40.957	20.444	1	30454			26972	3708	15522	15970	21509	21509					-0.00466588347421748
TPVLFLGLW	9	Unmodified	_TPVLFLGLW_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.30767819815	2	523.307678	1044.6008	1.9608	0.0010261	-7.5934	-0.0039737	-5.6326	-0.0029476	523.3033719789148	30.125	0.19311	30.125	30.053	30.246	0	1209	175	0.892844	0.106483996	0.892844	362.33615	0	43.213623						785	9	4	NaN	NaN	NaN	0.67818	1	10422	10422		1.072	0.14616	1	162090	+		26973	9551	15523	15971	21510	21510					0.08028709350696772
TPVLFLGLW	9	Unmodified						0	0	0			REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-1|ATP8A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.307678	1044.6008	1.9608	0.0010261	-7.5934	-0.0039737	-5.6326	-0.0029476	523.3033719789148	30.125	0.19311	30.125	30.053	30.246	0	1209	175	0.892844	0.106483996	0.892844	362.33615		43.213623	0.0036914	-0.0002442	-0.0010792	NaN	1.072	785	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162090	+		26974	9551	15523	15971							0.08028709350696772
TPYEAAVAL	9	Unmodified	_TPYEAAVAL_					0	0	0		nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4880243735	1	934.488024	933.480748	1.376	0.0012859	-3.0275	-0.0028292	-1.6515	-0.0015433	934.4846760240562	24.261	0.096533	24.261	24.261	24.357	0	360	115	1.405474	0.067739844	1.405474	285.6321	0	13.766663						164	5	2	NaN	NaN	NaN	0.10956	1	6689	6689		34.439	4.8405	1	19635			26975	1705	15524	15972	21511	21511					0.011346762862785909
TPYEAAVAL	9	Unmodified	_TPYEAAVAL_					0	0	0		nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4880243735	1	934.488024	933.480748	1.5774	0.001474	-1.979	-0.0018494	-0.40165	-0.00037534	934.485840567496	24.285	0.072416	24.272	24.248	24.32	-0.012749	357	94	1.407258	0.055264354	1.4057386	285.99466	0	11.231262						149	4	3	NaN	NaN	NaN	0.14301	1	6542	6542		29.598	9.0429	1	14685			26976	1705	15524	15972	21512	21512					0.011346762862785909
TPYLLYFSN	9	Unmodified	_TPYLLYFSN_					0	0	0		PIK3R4|p.H424Y|1|0.49|ENSG00000196455|chr3:130733728-130733728|G/A|missense_variant	PIK3R4|p.H424Y|1|0.49|ENSG00000196455|chr3:130733728-130733728|G/A|missense_variant	PIK3R4|p.H424Y|1|0.49|ENSG00000196455|chr3:130733728-130733728|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2818573781501	2	559.281857	1116.54916	0.75042	0.0004197	3.1215	0.0017458	3.872	0.0021655	559.2834731663601	33.6	0.14467	33.6	33.504	33.648	0	1218	43	0.8873258	0.025755763	0.8873258	359.79468	0	10.443512						111	7	2	NaN	NaN	NaN	0.44082	1	13531	13531		12.049	0	1	10839			26977	8094	15525	15973	21513	21513					-0.004450791338513227
TPYPNDFQEP	10	Unmodified	_TPYPNDFQEP_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.26693559545	2	604.266936	1206.51932	0.76261	0.00046082	1.9061	0.0011518	2.6687	0.0016126	604.2673526758556	33.094	0.12066	33.094	33.021	33.142	0	1206	91	0.894683	0.055143297	0.894683	362.4478	0	22.339264						286	6	3	NaN	NaN	NaN	0.65442	1	16637	16637		11.17	0.56537	1	24721			26978	4325	15526	15974	21514	21514					-0.07568062869859205
TPYPNDFQEP	10	Unmodified						0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.266936	1206.51932	0.53216	0.00032157	3.8974	0.0023551	4.4296	0.0026767	604.2678855661558	33.068	0.19287	33.066	32.945	33.138	-0.0024796	1203	94	0.8965218	0.056966007	0.89500237	363.19275		23.077698	-0.013944	0.0015459	0.00015968	NaN	11.17	344	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28539			26979	4325	15526	15974							-0.07568062869859205
TQASASSI	8	Unmodified	_TQASASSI_					0	0	0			REV__ENST00000550115.5_1_12:56325996-56326442:+|nuORF	REV__ENST00000550115.5_1_12:56325996-56326442:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.3784739241001	1	764.378474	763.371197	1.8747	0.001433	4.9849	0.0038103	6.8596	0.0052434	764.3822403862044	21.729	0.28893	21.715	21.643	21.932	-0.013897	540	115	1.2980826	0.06829059	1.2965631	264.6601	0	13.923462						542	13	2	NaN	NaN	NaN	0.67593	1	4184	4184		20.555	0	1	157980	+		26980	12734	15527	15975	21515	21515					-0.01995329333033169
TQDEARNRA	9	Unmodified	_TQDEARNRA_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7601434061	2	530.760143	1059.50573	1.4651	0.00077762	1.984	0.001053	3.4491	0.0018307	530.7615681930765	36.808	0.14434	36.808	36.76	36.904	0	1281	73	0.84864825	0.044238746	0.84864825	344.33746	0	17.949799						186	7	2	NaN	NaN	NaN	0.59509	1	11055	11055		5.6942	0.2283	1	17170	+		26981	9765	15528	15976	21516	21516					-0.021638758584231255
TQDEARNRA	9	Unmodified						0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	530.760143	1059.50573	1.4651	0.00077762	1.984	0.001053	3.4491	0.0018307	530.7615681930765	36.808	0.14434	36.808	36.76	36.904	0	1281	73	0.84864825	0.044238746	0.84864825	344.33746		17.949799	0.00022817	0.00055971	-0.00016217	NaN	5.6942	186	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17170	+		26982	9765	15528	15976							-0.021638758584231255
TQETLIWTTGP	11	Unmodified	_TQETLIWTTGP_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8193353066999	2	623.819335	1245.62412	1.5656	0.00097666	3.8566	0.0024058	5.4222	0.0033825	623.8217676387474	15.268	0.33581	15.256	15.208	15.544	-0.012202	1191	76	0.90387505	0.04595518	0.9023556	366.0416	0	18.610443						852	15	5	NaN	NaN	NaN	0.026113	1	16914	16914		58.769	5.1178	1	415130	+		26983	9257	15529	15977	21517	21517					0.011130586066883552
TQFGASAT	8	Unmodified	_TQFGASAT_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.3679092378001	1	782.367909	781.360633	2.1841	0.0017088	5.4118	0.004234	7.5959	0.0059428	782.3719516637929	23.103	0.12055	23.103	23.079	23.2	0	504	100	1.3196158	0.059225917	1.3196158	268.94104	0	12.070374						206	6	2	NaN	NaN	NaN	0.69898	1	4504	4504		19.118	2.7017	1	18484			26984	3730	15530	15978	21518	21518					-0.038793119874753756
TQGAGARG	8	Unmodified	_TQGAGARG_					0	0	0			REV__ENST00000496841.5_1_2:128377972-128392002:+|nuORF	REV__ENST00000496841.5_1_2:128377972-128392002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.18555168975	2	359.185552	716.35655	1.2576	0.00045173	3.2575	0.0011701	4.5152	0.0016218	359.18720907197275	55.578	0.02401	55.578	55.554	55.578	-0.00059128	1446	22	0.7469324	0.012984991	0.74541295	304.92184	0	5.300873						27	2	2	NaN	NaN	NaN	0.84727	1	3467	3467		1.2418	0	1	1862.3	+		26985	12503	15531	15979	21519	21519					-0.01297356690520246
TQGAGARG	8	Unmodified						0	0	0			REV__ENST00000496841.5_1_2:128377972-128392002:+|nuORF	REV__ENST00000496841.5_1_2:128377972-128392002:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	359.185552	716.35655	1.2576	0.00045173	3.2575	0.0011701	4.5152	0.0016218	359.18720907197275	55.578	0.02401	55.578	55.554	55.578	-0.00059128	1446	22	0.7469324	0.012984991	0.74541295	304.92184		5.300873	-0.0254	-0.001874	0.00016778	NaN	1.2418	27	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1862.3	+		26986	12503	15531	15979							-0.01297356690520246
TQGGAHAP	8	Unmodified	_TQGGAHAP_					0	0	0		ENST00000434030.1_1_3:50310607-50311493:+|nuORF;ENST00000419007.5_1_3:50310971-50311493:+|nuORF	ENST00000434030.1_1_3:50310607-50311493:+|nuORF	ENST00000434030.1_1_3:50310607-50311493:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3529278756	1	738.352928	737.345651	1.43	0.0010559	-6.6368	-0.0049003	-5.2068	-0.0038444	738.3481966417748	29.691	0.19305	29.691	29.618	29.811	0	660	58	1.2261056	0.034256816	1.2261056	250.14078	0	6.9888153						172	9	2	NaN	NaN	NaN	0.84692	1	3871	3871		1.4396	0.19772	1	14456			26987	6902	15532	15980	21520	21520					-0.03352759064819111
TQGGAHAP	8	Unmodified	_TQGGAHAP_					0	0	0		ENST00000434030.1_1_3:50310607-50311493:+|nuORF;ENST00000419007.5_1_3:50310971-50311493:+|nuORF	ENST00000434030.1_1_3:50310607-50311493:+|nuORF	ENST00000434030.1_1_3:50310607-50311493:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3529278756	1	738.352928	737.345651	1.553	0.0011467	-1.2472	-0.00092088	0.30584	0.00022582	738.3518829710914	55.893	0.12006	55.893	55.845	55.965	0	441	58	1.3572328	0.034005404	1.3572328	276.89233	0	6.9375						112	6	2	NaN	NaN	NaN	0.84876	1	3872	3872		0.39566	0	1	7730.2			26988	6902	15532	15980	21521	21521					-0.03352759064819111
TQGGPGNSS	9	Unmodified	_TQGGPGNSS_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.3482364282	1	804.348236	803.34096	1.4509	0.001167	2.2195	0.0017853	3.6704	0.0029523	804.349560714287	31.066	0.28958	31.066	31.066	31.356	0	507	100	1.3178225	0.05918801	1.3178225	268.44867	0	12.056976						494	13	4	NaN	NaN	NaN	0.59509	1	4783	4783		5.6942	0.2283	1	137900			26989	3051	15533	15981	21522	21522					-0.06857687998228812
TQGGPGNSS	9	Unmodified						0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	804.348236	803.34096	1.5695	0.0012625	5.2141	0.0041939	6.7836	0.0054564	804.3515974268033	31.089	0.28964	31.084	31.036	31.326	-0.0050716	507	91	1.3178225	0.05381584	1.316303	268.44864		10.9626465	0.0090191	0.00096983	-0.00075972	NaN	5.6942	436	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132060			26990	3051	15533	15981							-0.06857687998228812
TQGKRELPS	9	Unmodified	_TQGKRELPS_					0	0	0			REV__ENST00000441722.5_1_20:47897104-47905743:+|nuORF	REV__ENST00000441722.5_1_20:47897104-47905743:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.28018035645	2	508.28018	1014.54581	1.9773	0.001005	6.5464	0.0033274	8.5237	0.0043324	508.283645366726	17.261	0.071985	17.261	17.213	17.285	0	1332	43	0.8172735	0.02586186	0.8172735	331.7957	0	10.499359						54	4	2	NaN	NaN	NaN	0.38313	1	9163	9163		14.425	1.4222	1	6766.2	+		26991	12193	15534	15982	21523	21523					0.03911670812135526
TQHQELLET	9	Unmodified	_TQHQELLET_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7749278030501	2	549.774928	1097.5353	0.54527	0.00029978	6.2146	0.0034166	6.7599	0.0037164	549.7786711871273	35.458	0.096481	35.458	35.385	35.482	0	1224	43	0.883646	0.025764108	0.883646	358.37827	0	10.449097						102	5	2	NaN	NaN	NaN	0.46215	1	12742	12742		11.17	0.81017	1	11050			26992	1168	15535	15983	21524	21524					-0.009563566329461537
TQIVTVIL	8	Unmodified	_TQIVTVIL_					0	0	0		ENST00000591814.5_1_18:77227692-77227848:+|nuORF	ENST00000591814.5_1_18:77227692-77227848:+|nuORF	ENST00000591814.5_1_18:77227692-77227848:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.5607953861	1	886.560795	885.553519	1.6102	0.0014275	-1.2582	-0.0011155	0.35198	0.00031205	886.5595774770101	30.511	0.072418	30.511	30.487	30.56	0	339	43	1.4179583	0.024959445	1.4179583	288.39587	0	5.0764465						78	4	2	NaN	NaN	NaN	0.75561	1	5886	5886		15.175	0	1	7064.7			26993	7733	15536	15984	21525	21525					0.10616430079699057
TQLAAAGG	8	Unmodified	_TQLAAAGG_					0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3624299294	1	688.36243	687.355153	1.8381	0.0012653	6.935	0.0047738	8.7731	0.0060391	688.367819080528	23.151	0.096521	23.138	23.114	23.21	-0.013294	666	64	1.2224985	0.03786683	1.2209791	249.73566	0	7.7355347						102	5	2	NaN	NaN	NaN	0.80692	1	2904	2904		8.2903	2.8244	1	8338.7	+		26994	10110	15537	15985	21526	21526					-0.0010299077928266342
TQLAAAGG	8	Unmodified						0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	688.36243	687.355153	2.2963	0.0015807	5.0242	0.0034585	7.3205	0.0050392	688.3664958594198	23.152	0.096458	23.152	23.103	23.2	0	666	58	1.2224985	0.034267783	1.2224985	249.73567		7.0003204	0.006985	-0.00055513	0.00075972	NaN	8.2903	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7203.9	+		26995	10110	15537	15985							-0.0010299077928266342
TQLAAAGG	8	Unmodified						0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	688.36243	687.355153	1.8381	0.0012653	6.935	0.0047738	8.7731	0.0060391	688.367819080528	23.151	0.096521	23.138	23.114	23.21	-0.013294	666	64	1.2224985	0.03786683	1.2209791	249.73566		7.7355347	-0.006985	0.00076023	-0.00075972	NaN	8.2903	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8338.7	+		26996	10110	15537	15985							-0.0010299077928266342
TQLGGGTG	8	Unmodified	_TQLGGGTG_					0	0	0		AGAP3|p.S475Lfs*180|1|0.12|ENSG00000133612|chr7:151138179-151138179|C/-|frameshift_variant;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	AGAP3|p.S475Lfs*180|1|0.12|ENSG00000133612|chr7:151138179-151138179|C/-|frameshift_variant	AGAP3|p.S475Lfs*180|1|0.12|ENSG00000133612|chr7:151138179-151138179|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3416944873002	1	690.341694	689.334418	0.9197	0.0006349	6.7937	0.0046899	7.7134	0.0053249	690.3458045531775	20.959	0.21665	20.945	20.897	21.113	-0.014088	684	103	1.2116731	0.061403394	1.2101537	247.51033	0	12.542969						233	10	3	NaN	NaN	NaN	0.81251	1	2929	2929		7.5404	2.6306	1	24656			26997	17	15538	15986	21527	21527					-0.022675811589351724
TQLLVDPEL	9	Unmodified	_TQLLVDPEL_					0	0	0			REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2871397213	2	514.28714	1026.55973	0.92167	0.000474	-1.8273	-0.00093974	-0.9056	-0.00046574	514.2856630915801	27.904	0.096504	27.895	27.87	27.967	-0.009552	1275	70	0.85233563	0.042420685	0.8508162	345.97598	0	17.219208						180	5	3	NaN	NaN	NaN	0.12866	1	9447	9447		31.675	1.64	1	14559	+		26998	11697	15539	15987	21528	21528					0.04750903520562133
TQLLVDPEL	9	Unmodified						0	0	0			REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	REV__ENST00000313486.11_1_17:1422233-1422356:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.28714	1026.55973	0.92167	0.000474	-1.8273	-0.00093974	-0.9056	-0.00046574	514.2856630915801	27.904	0.096504	27.895	27.87	27.967	-0.009552	1275	70	0.85233563	0.042420685	0.8508162	345.97598		17.219208	-0.0051472	7.7719E-05	0.00016207	NaN	31.675	180	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14559	+		26999	11697	15539	15987							0.04750903520562133
TQLSGAST	8	Unmodified	_TQLSGAST_					0	0	0			REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.3784739241001	1	764.378474	763.371197	1.374	0.0010502	5.4846	0.0041923	6.8585	0.0052425	764.3819572861033	30.511	0.096535	30.511	30.487	30.584	0	555	52	1.2891023	0.030539632	1.2891023	262.82913	0	6.226593						107	5	2	NaN	NaN	NaN	0.80692	1	4259	4259		8.2903	0	1	8695.1	+		27000	11934	15540	15988	21529	21529					-0.01995329333033169
TQLSGAST	8	Unmodified						0	0	0			REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.378474	763.371197	1.374	0.0010502	5.4846	0.0041923	6.8585	0.0052425	764.3819572861033	30.511	0.096535	30.511	30.487	30.584	0	555	52	1.2891023	0.030539632	1.2891023	262.82913		6.226593	0.0033666	-0.00021456	-0.00013851	NaN	8.2903	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8695.1	+		27001	11934	15540	15988							-0.01995329333033169
TQNPFLQVK	9	Unmodified	_TQNPFLQVK_					0	0	0		ENST00000556133.1_1_14:89307222-89313236:+|nuORF	ENST00000556133.1_1_14:89307222-89313236:+|nuORF	ENST00000556133.1_1_14:89307222-89313236:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.80074862305	2	537.800749	1073.58694	1.2433	0.00066867	-5.9468	-0.0031982	-4.7035	-0.0025295	537.7974018613805	34.975	0.072273	34.975	34.927	34.999	0	1263	37	0.85970795	0.022109807	0.85970795	348.76624	0	8.969513						50	4	2	NaN	NaN	NaN	0.35794	1	11725	11725		15.463	0.28729	1	4588.6			27002	7574	15541	15989	21530	21530					0.0530943185160595
TQPCTPHLGP	10	Unmodified	_TQPCTPHLGP_					0	0	0		ENST00000262366.7_1_16:4388800-4388938:+|nuORF	ENST00000262366.7_1_16:4388800-4388938:+|nuORF	ENST00000262366.7_1_16:4388800-4388938:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7554838396501	2	525.755484	1049.49641	1.1402	0.00059945	-3.7145	-0.0019529	-2.5743	-0.0013534	525.7536759281383	13.541	0.16795	13.531	13.435	13.603	-0.010098	1266	82	0.85786515	0.04978746	0.8563457	348.1198	0	20.203644						165	8	2	NaN	NaN	NaN	0.5917	1	10382	10382		15.463	0	1	13219			27003	6309	15542	15990	21531	21531					-0.026353604683208687
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1120.5421852089999	1	1120.54219	1119.53491	1.8287	0.0020492	1.4818	0.0016604	3.3105	0.0037096	1120.5438230231805	27.374	0.096561	27.374	27.35	27.446	0	75	58	1.5741152	0.03356397	1.5741152	319.13083	0	6.804657						113	5	2	NaN	NaN	NaN	0.4422	1	13647	13647		21.85	5.2662	1	9490.7			27004	3948	15543	15991	21532	21532					-0.020077315621620073
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.7747308378	2	560.774731	1119.53491	1.5761	0.00088386	6.7921	0.0038088	8.3682	0.0046927	561.2820980650682	27.374	0.24139	27.374	27.277	27.519	0	1227	97	0.88180584	0.05888945	0.88180584	357.54477	0	23.877838						444	11	4	NaN	NaN	NaN	0.34981	1	13648	13648		25.681	5.2327	1	64978			27005	3948	15543	15991	21533	21533					-0.020077315621620073
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1120.5421852089999	1	1120.54219	1119.53491	1.4656	0.0016422	1.0084	0.00113	2.474	0.0027722	1120.5446393651678	27.373	0.14479	27.363	27.339	27.484	-0.010126	72	49	1.5758814	0.028257012	1.5743619	319.48892	0	5.7286987						103	7	2	NaN	NaN	NaN	0.34693	1	13247	13247		25.801	5.3523	1	6980.8			27006	3948	15543	15991	21534	21534					-0.020077315621620073
TQPLGCSVPS	10	Unmodified	_TQPLGCSVPS_					0	0	0			REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.74204211340003	2	494.742042	987.469531	0.63667	0.00031499	3.781	0.0018706	4.4176	0.0021856	494.7429564864732	31.717	0.048269	31.712	31.688	31.737	-0.0044155	1353	37	0.8043377	0.022184074	0.80281824	326.66382	0	9.0095825						50	3	2	NaN	NaN	NaN	0.77594	1	7954	7954		1.5054	0	1	4464.3	+		27007	12144	15544	15992	21535	21535					-0.02470469079491977
TQPLGCSVPS	10	Unmodified						0	0	0			REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.742042	987.469531	1.0655	0.00052716	3.3757	0.0016701	4.4412	0.0021972	494.74356276729725	31.718	0.072422	31.718	31.694	31.766	0	1353	40	0.8043377	0.024034083	0.8043377	326.66382		9.760895	0.0027574	-0.00012109	0.00075972	NaN	1.5054	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5329	+		27008	12144	15544	15992							-0.02470469079491977
TQPLGCSVPS	10	Unmodified						0	0	0			REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	494.742042	987.469531	0.63667	0.00031499	3.781	0.0018706	4.4176	0.0021856	494.7429564864732	31.717	0.048269	31.712	31.688	31.737	-0.0044155	1353	37	0.8043377	0.022184074	0.80281824	326.66382		9.0095825	-0.0027574	0.00027992	-0.00075972	NaN	1.5054	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4464.3	+		27009	12144	15544	15992							-0.02470469079491977
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENST00000481988.1_1_X:99901319-99905990:+|nuORF;ENSG00000102359|ENST00000373004|SRPX2	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.34004095905	2	583.340041	1164.66553	1.5934	0.00092951	-2.242	-0.0013078	-0.64852	-0.00037831	583.338504872374	32.128	0.14475	32.128	32.104	32.249	0	1191	76	0.90387505	0.04592544	0.90387505	366.3204	0	18.612549						247	7	2	NaN	NaN	NaN	0.4422	1	15308	15308		21.85	1.295	1	61983			27010	1375	15545	15993	21536	21536					0.0897828415670574
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENST00000481988.1_1_X:99901319-99905990:+|nuORF;ENSG00000102359|ENST00000373004|SRPX2	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.34004095905	2	583.340041	1164.66553	1.0193	0.00059461	-5.597	-0.0032649	-4.5776	-0.0026703	583.3388175696797	32.2	0.19305	32.196	32.123	32.316	-0.0037613	1185	79	0.90755045	0.04775989	0.906031	367.81	0	19.356018						515	9	5	NaN	NaN	NaN	0.47445	1	14780	14780		20.513	3.9292	1	78316			27011	1375	15545	15993	21537	21537					0.0897828415670574
TQRPRKKRPS	10	Unmodified	_TQRPRKKRPS_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3810944193001	2	627.381094	1252.74764	1.6093	0.0010097	0.10891	6.8328E-05	1.7183	0.001078	627.3813576668954	41.426	0.84177	41.426	40.897	41.738	0	1200	106	0.89836043	0.06440687	0.89836043	363.78568	0	26.081177						1865	36	3	NaN	NaN	NaN	0.76892	1	17850	17850		3.2116	0	1	955830	+		27012	9013	15546	15994	21538	21538					0.13137199288371448
TQRPRKKRPS	10	Unmodified	_TQRPRKKRPS_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3810944193001	2	627.381094	1252.74764	1.3933	0.00087413	1.0762	0.00067517	2.4695	0.0015493	627.3819465209558	39.983	0.45691	39.983	39.959	40.416	0	1197	106	0.9001988	0.0643999	0.9001988	364.53012	0	26.07837						1022	20	2	NaN	NaN	NaN	0.74854	1	17852	17852		4.7291	1.5175	1	693220	+		27013	9013	15546	15994	21539	21539					0.13137199288371448
TQTAQHIIC	9	Unmodified	_TQTAQHIIC_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.75548383964997	2	507.755484	1013.49641	1.9369	0.00098348	4.8607	0.0024681	6.7976	0.0034515	507.7583100346143	26.143	0.096525	26.131	26.107	26.204	-0.011137	1323	67	0.8228144	0.040622413	0.82129496	334.0498	0	16.492065						84	5	2	NaN	NaN	NaN	0.54912	1	8941	8941		7.5876	0.047225	1	6742.7	+		27014	10806	15547	15995	21540	21540					-0.009793604683181911
TQTWAGSH	8	Unmodified	_TQTWAGSH_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	887.4006063497001	1	887.400606	886.39333	2.4116	0.0021401	-8.4683	-0.0075148	-6.0567	-0.0053747	887.3896654714092	29.642	0.048227	29.635	29.586	29.635	-0.0070648	447	31	1.3536539	0.01789856	1.3521345	275.31317	0	3.6402893						39	3	2	NaN	NaN	NaN	0.83582	1	5764	5764		4.4131	0.3594	1	2166.9			27015	5898;5943	15548	15996	21541	21541					-0.05441104864621593
TQTYQPYKK	9	Unmodified	_TQTYQPYKK_					0	0	0		ENST00000523006.1_1_7:139219111-139219246:+|nuORF	ENST00000523006.1_1_7:139219111-139219246:+|nuORF	ENST00000523006.1_1_7:139219111-139219246:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.8034882772499	2	578.803488	1155.59242	1.2431	0.00071951	-2.8921	-0.0016739	-1.6489	-0.00095442	578.8001664375637	22.308	0.24077	22.294	22.222	22.462	-0.013731	1170	67	0.91673553	0.040412188	0.9152161	371.56665	0	16.3797						271	11	3	NaN	NaN	NaN	0.12866	1	14512	14512		31.675	0	1	57998			27016	7406	15549	15997	21542	21542					0.020851106434065514
TQYLELIF	8	Unmodified	_TQYLELIF_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.5506246302998	1	1026.55062	1025.54335	0.81702	0.00083872	0.73732	0.00075689	1.5543	0.0015956	1026.5516214500647	46.412	0.071918	46.422	46.374	46.446	0.0098152	195	34	1.5033154	0.01951027	1.501796	305.11728	0	3.9598389						53	4	2	NaN	NaN	NaN	0.72013	1	9414	9414		17.799	1.3823	1	2858.7	+		27017	8706	15550	15998	21543	21543					0.031598223544506254
TQYLGSPEEN	10	Unmodified	_TQYLGSPEEN_					0	0	0			REV__nc|ENSG00000158486|Q8TD57-3|DNAH3	REV__nc|ENSG00000158486|Q8TD57-3|DNAH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.8401374051333	3	379.840137	1136.49858	1.521	0.00057775	7.0555	0.00268	8.5765	0.0032577	379.8417902943967	35.82	0.048244	35.82	35.795	35.844	0	1518	28	0.7023569	0.016740322	0.7023569	427.09363	0	10.179565						32	3	2	NaN	NaN	NaN	0.74854	1	14325	14325		2.239	0	1	1759.4	+		27018	10167	15551	15999	21544	21544					-0.06420653249506358
TRAEVPRL	8	Unmodified	_TRAEVPRL_					0	0	0		ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	ENST00000372870.5_1_9:131122965-131123439:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	471.2799833912	2	471.279983	940.545414	-0.1127	-5.3115E-05	2.2275	0.0010498	2.1148	0.00099666	471.28141445176385	20.935	0.096249	20.921	20.897	20.993	-0.014088	1350	61	0.80618626	0.036957502	0.8046668	327.6389	0	15.019745						104	5	2	NaN	NaN	NaN	0.67593	1	6695	6695		20.555	6.8184	1	12662			27019	6666	15552	16000	21545	21545					0.0727629588294576
TRCRFIRC	8	Unmodified	_TRCRFIRC_					0	0	0			REV__ENST00000533264.5_1_16:70069634-70099679:-|nuORF	REV__ENST00000533264.5_1_16:70069634-70099679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.77348801505	2	527.773488	1053.53242	2.118	0.0011178	1.167	0.00061591	3.2849	0.0017337	527.7744099189573	18.245	0.047873	18.245	18.245	18.292	0	1287	55	0.8449601	0.033186257	0.8449601	342.86594	0	13.466217						65	3	2	NaN	NaN	NaN	0.83582	1	10796	10796		4.4131	0.84331	1	6241.6	+		27020	12655	15553	16001	21546	21546					0.00779818227533724
TRDYPQYRDNK	11	Unmodified	_TRDYPQYRDNK_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.35239655935	2	728.352397	1454.69024	0.68204	0.00049676	8.646	0.0062974	9.3281	0.0067941	728.3574067343617	31.573	0.096552	31.573	31.549	31.646	0	1065	64	0.9808926	0.038403094	0.9808926	396.60486	0	15.527527						108	5	2	NaN	NaN	NaN	0.75376	1	20401	20401		3.9281	1.3287	1	8991.6			27021	2147	15554	16002	21547	21547					-0.018917324985295636
TREVTDTQMP	10	Unmodified	_TREVTDTQMP_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2795200419499	2	589.27952	1176.54449	1.737	0.0010236	-9.9156	-0.005843	-8.1786	-0.0048195	589.2720015748866	16.398	0.1438	16.398	16.398	16.542	0	1218	43	0.8873258	0.025753021	0.8873258	359.57092	0	10.435883						115	7	4	NaN	NaN	NaN	0.76025	1	15690	15690		3.9281	0.35833	1	8941.8			27022	5793	15555	16003	21548	21548					-0.03672331338952972
TREVTDTQMP	10	Unmodified						0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.27952	1176.54449	1.7959	0.0010583	-13.389	-0.0078897	-11.593	-0.0068314	589.2708372172489	16.515	0.19177	16.502	16.406	16.598	-0.012993	1221	43	0.885486	0.025753021	0.88396657	358.82538		10.435883	0.051869	-0.0019238	-0.0016796	NaN	3.9281	107	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7843.5			27023	5793	15555	16003							-0.03672331338952972
TRGAGAGG	8	Unmodified	_TRGAGAGG_					0	0	0		ENST00000526146.5_1_11:118184333-118186254:+|nuORF;ENST00000531913.1_1_11:118183295-118186254:+|nuORF;ENSG00000198851|ENST00000361763|CD3E	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3267131251001	1	646.326713	645.319437	2.1445	0.0013861	5.5543	0.0035899	7.6988	0.004976	646.3291351575772	23.272	0.19287	23.272	23.224	23.417	0	1119	70	0.9479278	0.042164862	0.9479278	193.89162	0	8.624512						144	9	2	NaN	NaN	NaN	0.84876	1	1931	1931		0.39566	0	1	11898			27024	5824	15556	16004	21549	21549					-0.017410282362789076
TRGAGAGG	8	Unmodified						0	0	0		ENST00000526146.5_1_11:118184333-118186254:+|nuORF;ENST00000531913.1_1_11:118183295-118186254:+|nuORF;ENSG00000198851|ENST00000361763|CD3E	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	646.326713	645.319437	2.3843	0.001541	8.3273	0.0053821	10.712	0.0069232	646.3325248268579	23.392	0.096531	23.379	23.331	23.427	-0.013296	1119	58	0.9479278	0.034839332	0.94640833	193.8916		7.126129	0.053407	0.00082316	-0.00075972	NaN	0.39566	97	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6727.7			27025	5824	15556	16004							-0.017410282362789076
TRGGAGQG	8	Unmodified	_TRGGAGQG_					0	0	0		ENST00000482862.1_1_7:104909300-105029811:-|nuORF	ENST00000482862.1_1_7:104909300-105029811:-|nuORF	ENST00000482862.1_1_7:104909300-105029811:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3481768487002	1	703.348177	702.3409	-0.49613	-0.00034895	7.1467	0.0050266	6.6506	0.0046777	703.3528352158295	56.779	0.12017	56.778	56.754	56.874	-0.00056458	612	43	1.2549332	0.02520001	1.2534138	256.2547	0	5.1457977						87	6	2	NaN	NaN	NaN	0.84887	1	3198	3198		0.32989	0	1	6283.6			27026	7214	15557	16005	21550	21550					-0.02217643207563924
TRGPSAPV	8	Unmodified	_TRGPSAPV_					0	0	0		ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.7192273316	2	392.719227	783.423902	1.1102	0.00043599	-4.3602	-0.0017124	-3.2501	-0.0012764	392.7175997688377	26.988	0.19307	26.988	26.94	27.133	0	1401	58	0.77473325	0.035191536	0.77473325	315.7639	0	14.343262						222	9	3	NaN	NaN	NaN	0.81251	1	4546	4546		7.5404	0	1	42806			27027	5992	15558	16006	21551	21551					0.023526735204200122
TRHCFYGL	8	Unmodified	_TRHCFYGL_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.7396368102	2	498.739637	995.464721	1.6032	0.00079957	-3.7014	-0.001846	-2.0982	-0.0010465	498.7358409995286	28.605	0.14482	28.605	28.508	28.653	0	1347	43	0.8080346	0.025875807	0.8080346	328.12906	0	10.507751						100	7	2	NaN	NaN	NaN	0.5868	1	8399	8399		26.115	6.8302	1	9664.6			27028	5528	15559	16007	21552	21552					-0.0331930843160535
TRITTRWPTWN	11	Unmodified	_TRITTRWPTWN_					0	0	0			REV__ENST00000583676.1_2_17:62532828-62538264:+|nuORF	REV__ENST00000583676.1_2_17:62532828-62538264:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.3782173793501	2	716.378217	1430.74188	1.934	0.0013855	3.648	0.0026134	5.5821	0.0039989	716.3804576147346	18.29	0.12	18.276	18.252	18.372	-0.01395	1047	52	0.99186665	0.031081498	0.9903472	401.10526	0	12.569153						245	6	4	NaN	NaN	NaN	0.71564	1	19318	19318		6.4299	1.7009	1	46987	+		27029	12873	15560	16008	21553	21553					0.04374055986045278
TRITTRWPTWN	11	Unmodified						0	0	0			REV__ENST00000583676.1_2_17:62532828-62538264:+|nuORF	REV__ENST00000583676.1_2_17:62532828-62538264:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	716.378217	1430.74188	1.934	0.0013855	3.648	0.0026134	5.5821	0.0039989	716.3804576147346	18.29	0.12	18.276	18.252	18.372	-0.01395	1047	52	0.99186665	0.031081498	0.9903472	401.10526		12.569153	0.0035403	-0.00024619	-0.00075972	NaN	6.4299	245	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46987	+		27030	12873	15560	16008							0.04374055986045278
TRKFRDEPRPR	11	Unmodified	_TRKFRDEPRPR_					0	0	0		ENSG00000162396|ENST00000371279|PARS2	ENSG00000162396|ENST00000371279|PARS2	ENSG00000162396|ENST00000371279|PARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.6076524795666	3	486.607652	1456.80113	1.7532	0.00085313	0.18859	9.177E-05	1.9418	0.0009449	486.940395476675	12.124	0.024024	12.124	12.124	12.148	0	1410	25	0.76917666	0.01481992	0.76917666	466.4931	0	8.988007						34	2	2	NaN	NaN	NaN	0.77891	1	20410	20410		0.43218	0.24786	1	4354.6			27031	4127	15561	16009	21554	21554					0.09099952000201483
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.8715	0.0023016	-3.0649	-0.0037692	-1.1934	-0.0014676	1230.8028125361743	39.983	0.072186	39.983	39.983	40.056	0	54	88	1.5864743	0.051213026	1.5864743	321.28784	0	10.3714905						226	4	4	NaN	NaN	NaN	0.68136	1	17228	17228		0.79988	0	1	50916			27032	6608	15562	16010	21555	21555					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.9928	0.0024508	-2.6752	-0.00329	-0.68241	-0.00083923	1230.8023972195253	41.594	0.096207	41.594	41.594	41.69	0	54	79	1.5864743	0.045912623	1.5864743	321.28784	0	9.298065						234	5	4	NaN	NaN	NaN	0.66529	1	17229	17229		2.1763	1.1043	1	28831			27033	6608	15562	16010	21556	21556					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.9759	0.00243	-2.3067	-0.0028368	-0.33082	-0.00040684	1229.799257631924	41.377	0.048092	41.377	41.329	41.377	0	54	79	1.5864743	0.045907855	1.5864743	321.28784	0	9.297119						184	3	3	NaN	NaN	NaN	0.68136	1	17232	17232		0.79988	0.10873	1	33087			27034	6608	15562	16010	21557	21557					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.9602	0.0024107	-2.0658	-0.0025405	-0.10556	-0.00012982	1230.8028140266076	41.738	0.072182	41.738	41.738	41.811	0	57	58	1.5847093	0.033542633	1.5847093	320.9304	0	6.792938						96	4	2	NaN	NaN	NaN	0.68136	1	17233	17233		0.79988	0.10873	1	12433			27035	6608	15562	16010	21558	21558					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.9507	0.002399	-1.992	-0.0024497	-0.041229	-5.0703E-05	1229.8003114474018	39.887	0.048149	39.887	39.887	39.935	0	54	112	1.5864743	0.0653615	1.5864743	321.28784	0	13.236786						264	3	3	NaN	NaN	NaN	0.68136	1	17234	17234		0.79988	0.10873	1	90478			27036	6608	15562	16010	21559	21559					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1229.8025312665998	1	1229.80253	1228.79525	1.9461	0.0023933	-1.7156	-0.0021099	0.23044	0.0002834	1229.8000839722918	40.969	0.048046	40.969	40.921	40.969	0	60	52	1.582944	0.030011892	1.582944	320.5729	0	6.0779114						62	3	2	NaN	NaN	NaN	0.68136	1	17235	17235		0.79988	0.10873	1	4787.5			27037	6608	15562	16010	21560	21560					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.8025312665998	1	1229.80253	1228.79525	1.0815	0.00133	-2.5149	-0.0030928	-1.4334	-0.0017628	1229.7994019985108	41.568	0.072121	41.577	41.553	41.625	0.0082588	54	79	1.5864743	0.045907855	1.5849549	321.28784	0	9.297119						274	4	4	NaN	NaN	NaN	0.68136	1	16517	16517		0.79988	0.10873	1	34197			27038	6608	15562	16010	21561	21561					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.8025312665998	1	1229.80253	1228.79525	1.1862	0.0014587	-1.7989	-0.0022123	-0.61276	-0.00075357	1229.8010258981235	41.376	0.096378	41.384	41.336	41.432	0.0082588	54	91	1.5864743	0.052981734	1.5849549	321.28784	0	10.729706						332	5	4	NaN	NaN	NaN	0.68136	1	16521	16521		0.79988	0.10873	1	60419			27039	6608	15562	16010	21562	21562					0.19000898279182366
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.8025312665998	1	1229.80253	1228.79525	1.2243	0.0015057	-0.75964	-0.00093421	0.46467	0.00057145	1230.8041107633312	41.087	0.09613	41.094	41.022	41.118	0.0074959	63	79	1.5811787	0.04591751	1.5796592	320.21536	0	9.299072						125	5	2	NaN	NaN	NaN	0.68136	1	16523	16523		0.79988	0.10873	1	12779			27040	6608	15562	16010	21563	21563					0.19000898279182366
TRKKTRKRR	9	Unmodified						0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1229.80253	1228.79525	1.4196	0.0017459	-3.6815	-0.0045275	-2.2618	-0.0027816	1229.8001903061866	40.006	0.072144	40.012	39.988	40.06	0.0060463	54	88	1.5864743	0.051213026	1.5849549	321.28784		10.3714905	0.014107	-0.0004275	-0.00075972	NaN	0.79988	218	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45260			27041	6608	15562	16010							0.19000898279182366
TRKKTRKRR	9	Unmodified						0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1229.80253	1228.79525	1.6385	0.002015	-2.9596	-0.0036397	-1.3211	-0.0016247	1229.7993159917617	39.837	0.096397	39.843	39.843	39.939	0.0060463	51	100	1.5882392	0.05828917	1.5867198	321.64526		11.804535	-0.022125	-0.0005363	0.0001227	NaN	0.79988	517	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129080			27042	6608	15562	16010							0.19000898279182366
TRKKTRKRR	9	Unmodified						0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1229.80253	1228.79525	1.155	0.0014204	-2.8176	-0.0034651	-1.6626	-0.0020447	1229.7993962627554	41.737	0.072227	41.745	41.745	41.817	0.0082588	51	67	1.5882392	0.038845062	1.5867198	321.64526		7.8667603	0.0033485	-0.00048935	0.0010052	NaN	0.79988	129	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9739.8			27043	6608	15562	16010							0.19000898279182366
TRKLLPWHL	9	Unmodified	_TRKLLPWHL_					0	0	0		ENST00000509911.2_1_9:37007519-37007720:+|nuORF	ENST00000509911.2_1_9:37007519-37007720:+|nuORF	ENST00000509911.2_1_9:37007519-37007720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.3560253742501	2	582.356025	1162.6975	1.5153	0.00088245	-1.7555	-0.0010223	-0.24017	-0.00013987	582.3547339377013	39.066	0.1207	39.071	39.071	39.192	0.0046806	1179	148	0.9112251	0.08995569	0.90970564	369.30655	0	36.457764						398	6	4	NaN	NaN	NaN	0.67989	1	14725	14725		0.92586	0	1	60155			27044	7349	15563	16011	21564	21564					0.12265696630493039
TRLLFSSGS	9	Unmodified	_TRLLFSSGS_					0	0	0			REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	967.5207214854001	1	967.520721	966.513445	1.5653	0.0015144	-4.978	-0.0048163	-3.4127	-0.0033019	967.516546513388	29.039	0.12066	29.039	29.015	29.136	0	339	67	1.4179583	0.039230227	1.4179583	288.02606	0	7.9687195						184	6	3	NaN	NaN	NaN	0.66822	1	7524	7524		1.9246	0.22244	1	18591	+		27045	12727	15564	16012	21565	21565					0.02884883409149097
TRLLFSSGS	9	Unmodified						0	0	0			REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	967.520721	966.513445	1.5653	0.0015144	-4.978	-0.0048163	-3.4127	-0.0033019	967.516546513388	29.039	0.12066	29.039	29.015	29.136	0	339	67	1.4179583	0.039230227	1.4179583	288.02606		7.9687195	-0.0077898	-7.5073E-05	-0.00013164	NaN	1.9246	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18591	+		27046	12727	15564	16012							0.02884883409149097
TRNAEGHSRE	10	Unmodified	_TRNAEGHSRE_					0	0	0			REV__ENST00000378679.7_1_5:132162167-132166338:-|nuORF	REV__ENST00000378679.7_1_5:132162167-132166338:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7763247865502	2	578.776325	1155.5381	1.2643	0.00073176	-1.2065	-0.00069827	0.057858	3.3487E-05	578.7757911662915	22.428	0.14451	22.414	22.39	22.535	-0.013731	1080	127	0.9717421	0.07682681	0.97022265	393.86185	0	31.139069						419	7	3	NaN	NaN	NaN	0.78213	1	14499	14499		0	0	1	45942	+		27047	11954	15565	16013	21566	21566					-0.03345088455421319
TRRGGAGA	8	Unmodified	_TRRGGAGA_					0	0	0			REV__ENST00000316939.2_1_19:13065244-13067802:-|nuORF	REV__ENST00000316939.2_1_19:13065244-13067802:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.4063604296	1	745.40636	744.399084	1.2051	0.00089826	-1.5221	-0.0011346	-0.31703	-0.00023631	745.4053493285079	43.561	0.21603	43.561	43.441	43.657	0	513	76	1.3142352	0.0448395	1.3142352	268.0739	0	9.14621						272	10	2	NaN	NaN	NaN	0.84727	1	3975	3975		1.2418	0	1	35331	+		27048	11706	15566	16014	21567	21567					0.016660384377019
TRRGGAGA	8	Unmodified						0	0	0			REV__ENST00000316939.2_1_19:13065244-13067802:-|nuORF	REV__ENST00000316939.2_1_19:13065244-13067802:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	745.40636	744.399084	1.2051	0.00089826	-1.5221	-0.0011346	-0.31703	-0.00023631	745.4053493285079	43.561	0.21603	43.561	43.441	43.657	0	513	76	1.3142352	0.0448395	1.3142352	268.0739		9.14621	0.019486	0.00014029	0.00075972	NaN	1.2418	272	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35331	+		27049	11706	15566	16014							0.016660384377019
TRRLTAAP	8	Unmodified	_TRRLTAAP_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.2668760159499	2	443.266876	884.519199	0.76717	0.00034006	-1.3758	-0.00060987	-0.60868	-0.00026981	443.26613256986815	29.859	0.12064	29.852	29.828	29.948	-0.0070648	1212	127	0.8910048	0.07730913	0.88948536	362.43976	0	31.44754						261	6	2	NaN	NaN	NaN	0.84945	1	5749	5749		0	0	1	24315	+		27050	10473	15567	16015	21568	21568					0.07232026711437811
TRRRPRHIRKR	11	Unmodified	_TRRRPRHIRKR_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1531.9628885080997	1	1531.96289	1530.95561	2.423	0.0037119	-3.6658	-0.0056159	-1.2429	-0.001904	1532.960114284647	35.022	0.024132	35.022	35.022	35.046	-4.5776E-05	378	52	1.3947657	0.030341625	1.3932463	281.84253	0	6.131195						39	2	2	NaN	NaN	NaN	0.78084	1	19638	19638		0.094767	0.094767	1	2428.9	+		27051	13160	15568	16016	21569	21569					0.2113724599607849
TRSDCCVAV	9	Unmodified	_TRSDCCVAV_					0	0	0		ENST00000288986.6_2_3:136667291-136667351:+|nuORF	ENST00000288986.6_2_3:136667291-136667351:+|nuORF	ENST00000288986.6_2_3:136667291-136667351:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.21259456969995	2	477.212595	952.410636	0.30872	0.00014733	1.5653	0.00074699	1.874	0.00089431	477.21404215543504	55.098	0.048019	55.097	55.073	55.121	-0.0006218	1320	28	0.824661	0.016619146	0.8231416	335.087	0	6.7529297						39	3	2	NaN	NaN	NaN	0.62619	1	7000	7000		4.4131	0.83987	1	2644			27052	6377	15569	16017	21570	21570					-0.06747268645494842
TRSDCCVAV	9	Unmodified						0	0	0		ENST00000288986.6_2_3:136667291-136667351:+|nuORF	ENST00000288986.6_2_3:136667291-136667351:+|nuORF	ENST00000288986.6_2_3:136667291-136667351:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.212595	952.410636	1.5658	0.00074722	5.7675	0.0027523	7.3334	0.0034996	477.2160123231339	55.1	0.048161	55.1	55.076	55.124	0	1329	52	0.81912065	0.0313918	0.81912065	332.83575		12.755493	0.0012575	0.0017209	-0.0020104	NaN	4.4131	111	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15127			27053	6377	15569	16017							-0.06747268645494842
TRSGKRSRVSW	11	Unmodified	_TRSGKRSRVSW_					0	0	0			REV__ENST00000534778.1_3_11:380790-381789:+|nuORF	REV__ENST00000534778.1_3_11:380790-381789:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5812148284	3	440.581215	1318.72182	1.4665	0.00064612	1.2766	0.00056244	2.7431	0.0012086	440.5815666115782	22.983	0.096291	22.983	22.935	23.031	0	1419	37	0.76361835	0.022237062	0.76361835	463.5773	0	13.499664						75	5	2	NaN	NaN	NaN	0.76545	1	19097	19097		2.789	0.084862	1	9032.7	+		27054	10865	15570	16018	21571	21571					0.07520305046068643
TRSHCLFLL	9	Unmodified	_TRSHCLFLL_					0	0	0			REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF	REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2973188646	2	545.297319	1088.58008	1.5007	0.00081831	-6.8884	-0.0037562	-5.3877	-0.0029379	545.7948969256448	28.436	0.16897	28.436	28.412	28.581	0	1239	70	0.87444305	0.04234737	0.87444305	354.68207	0	17.176483						230	8	3	NaN	NaN	NaN	0.47587	1	12331	12331		10.605	0	1	23387	+		27055	11512	15571	16019	21572	21572					0.0393379569939043
TRSSSTLE	8	Unmodified	_TRSSSTLE_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4370514355	1	880.437051	879.429775	1.1136	0.00098044	-1.3706	-0.0012067	-0.25703	-0.0002263	880.4357174454968	26.818	0.16893	26.808	26.759	26.928	-0.010645	378	58	1.3947657	0.03392577	1.3932463	283.70898	0	6.9008484						158	8	2	NaN	NaN	NaN	0.78264	1	5669	5669		11.548	0	1	17324	+		27056	10837	15572	16020	21573	21573					-0.014762727585662105
TRSVTLQIY	9	Unmodified	_TRSVTLQIY_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8060309662002	2	540.806031	1079.59751	2.1046	0.0011382	2.6277	0.0014211	4.7323	0.0025593	540.8075492832988	11.5	0.16813	11.5	11.452	11.62	0	1230	34	0.8799654	0.02024436	0.8799654	356.95905	0	8.212128						104	8	2	NaN	NaN	NaN	0.23499	1	11974	11974		23.086	6.6692	1	9098.8			27057	6188	15573	16021	21574	21574					0.06089414506072899
TSAGGGIF	8	Unmodified	_TSAGGGIF_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3515308921001	1	709.351531	708.344254	1.3536	0.00096017	5.8525	0.0041514	7.206	0.0051116	709.3557707915235	29.449	0.69977	29.442	29.128	29.828	-0.0070667	663	109	1.2243022	0.064980626	1.2227827	249.95937	0	13.266739						1377	30	3	NaN	NaN	NaN	0.69631	1	3324	3324		19.285	9.2331	1	374250			27058	2440	15574	16022	21575	21575					-0.021583931535701595
TSANNKIL	8	Unmodified	_TSANNKIL_					0	0	0			REV__ENST00000481985.5_1_22:39710087-39711482:-|nuORF	REV__ENST00000481985.5_1_22:39710087-39711482:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	860.4836076976002	1	860.483608	859.476331	1.3103	0.0011275	-8.1223	-0.0069891	-6.812	-0.0058616	860.4764697460395	31.694	0.072388	31.694	31.67	31.742	0	372	37	1.3983358	0.021421194	1.3983358	284.53693	0	4.3588257						69	4	2	NaN	NaN	NaN	0.76406	1	5526	5526		14.042	0	1	5151.4	+		27059	8804	15575	16023	21576	21576					0.04097211863393113
TSAPDDDVAM	10	Unmodified	_TSAPDDDVAM_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.4142670829	1	1021.41427	1020.40699	3.0482	0.0031135	0.076761	7.8405E-05	3.125	0.0031919	1021.4148299434003	18.628	0.11993	18.628	18.604	18.724	0	285	58	1.4500183	0.033810496	1.4500183	294.31958	0	6.862732						150	6	2	NaN	NaN	NaN	0.25724	1	9372	9372		30.61	11.492	1	14406			27060	2501	15576	16024	21577	21577					-0.10239659938349632
TSAPDDDVAM	10	Unmodified	_TSAPDDDVAM_					0	0	0		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.4142670829	1	1021.41427	1020.40699	2.1417	0.0021876	0.52556	0.00053681	2.6673	0.0027244	1021.415059544033	18.626	0.16797	18.612	18.588	18.756	-0.014059	288	70	1.4482387	0.040941596	1.4467193	293.95837	0	8.310181						158	8	2	NaN	NaN	NaN	0.47601	1	9182	9182		20.449	4.986	1	14492			27061	2501	15576	16024	21578	21578					-0.10239659938349632
TSAPDDDVAM	10	Oxidation (M)	_TSAPDDDVAM(Oxidation (M))_		TSAPDDDVAM(1)		TSAPDDDVAM(42)	0	0	1		ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1;nc|ENSG00000126391|Q9BZ67-2|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	ENSG00000126391|ENST00000317568|FRMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4091817049998	1	1037.40918	1036.40191	1.4413	0.0014952	0.1957	0.00020302	1.637	0.0016982	1037.4095727721688	14.861	0.12016	14.861	14.837	14.957	0	300	43	1.4411188	0.024924874	1.4411188	292.453	0	5.058136						95	6	2	NaN	NaN	NaN	0.12649	1	10047	10047		42.318	21.869	1	6944.5			27062	2501	15576	16025	21579	21579		291			-0.11483963800969832
TSASGGGG	8	Unmodified	_TSASGGGG_					0	0	0			REV__ENST00000596731.5_1_19:12780890-12781061:-|nuORF	REV__ENST00000596731.5_1_19:12780890-12781061:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.2525451290002	1	593.252545	592.245269	0.25107	0.00014895	7.2068	0.0042755	7.4579	0.0044244	593.2570606135583	31.838	0.19308	31.833	31.761	31.954	-0.0044155	1236	55	0.876284	0.033132493	0.8747646	179.57016	0	6.7895813						176	9	2	NaN	NaN	NaN	0.84945	1	544	544		0	0	1	20344	+		27063	12946	15577	16026	21580	21580					-0.06716416118456436
TSASSTAK	8	Unmodified	_TSASSTAK_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	752.3784739241001	1	752.378474	751.371197	1.683	0.0012663	3.5608	0.0026791	5.2439	0.0039454	752.3814178192333	26.505	0.12068	26.505	26.481	26.601	0	558	85	1.2873057	0.050330162	1.2873057	262.5368	0	10.264481						169	6	3	NaN	NaN	NaN	0.84692	1	4087	4087		1.4396	0	1	12947			27064	1995	15578	16027	21581	21581					-0.014433293330284869
TSATSGTL	8	Unmodified	_TSATSGTL_					0	0	0		MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant;ENSG00000117983|ENST00000529681|MUC5B	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3675748868001	1	737.367575	736.360298	2.2429	0.0016539	4.5162	0.0033301	6.7592	0.004984	737.3712979675058	26.143	0.096525	26.131	26.107	26.204	-0.011137	609	46	1.2567334	0.02699852	1.255214	256.39545	0	5.5081635						90	5	2	NaN	NaN	NaN	0.82797	1	3775	3775		5.4659	0	1	7527.2			27065	2160	15579	16028	21582	21582					-0.01842731707324674
TSCAGHGP	8	Unmodified	_TSCAGHGP_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.2984494641	1	729.298449	728.291173	1.5876	0.0011579	-8.7227	-0.0063614	-7.135	-0.0052036	729.2917961385842	54.38	0.071934	54.38	54.38	54.452	0	669	46	1.2206948	0.027053475	1.2206948	249.09343	0	5.520508						58	4	2	NaN	NaN	NaN	0.84692	1	3737	3737		1.4396	0	1	4109	+		27066	8696	15580	16029	21583	21583					-0.08384094207883663
TSCAGHGP	8	Unmodified	_TSCAGHGP_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.2984494641	1	729.298449	728.291173	0.070257	5.1238E-05	-7.0949	-0.0051743	-7.0246	-0.0051231	729.2931904543857	54.378	0.071964	54.377	54.353	54.425	-0.00061798	663	43	1.2243022	0.025245905	1.2227827	249.82953	0	5.151642						59	4	2	NaN	NaN	NaN	0.84207	1	3653	3653		3.5732	0	1	4444.9	+		27067	8696	15580	16029	21584	21584					-0.08384094207883663
TSCAGHGP	8	Unmodified						0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	729.298449	728.291173	1.5876	0.0011579	-8.7227	-0.0063614	-7.135	-0.0052036	729.2917961385842	54.38	0.071934	54.38	54.38	54.452	0	669	46	1.2206948	0.027053475	1.2206948	249.09343		5.520508	0.0013491	-0.000577	-0.0010439	NaN	3.5732	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4109	+		27068	8696	15580	16029							-0.08384094207883663
TSCAGHGP	8	Unmodified						0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	729.298449	728.291173	0.070257	5.1238E-05	-7.0949	-0.0051743	-7.0246	-0.0051231	729.2931904543857	54.378	0.071964	54.377	54.353	54.425	-0.00061798	663	43	1.2243022	0.025245905	1.2227827	249.82953		5.151642	-0.0013491	0.00061014	0.0010439	NaN	3.5732	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4444.9	+		27069	8696	15580	16029							-0.08384094207883663
TSCFSWMEMLI	11	Unmodified	_TSCFSWMEMLI_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.2927272651501	2	674.292727	1346.5709	1.0577	0.00071317	-4.945	-0.0033344	-3.8874	-0.0026212	674.290078664262	24.406	0.21705	24.406	24.333	24.55	0	1110	67	0.95342636	0.040329456	0.95342636	385.79092	0	16.318756						255	10	4	NaN	NaN	NaN	0.44477	1	19496	19496		20.449	2.479	1	45986			27070	3099	15581	16030	21585	21585					-0.08852101763454812
TSCFSWMEMLI	11	Unmodified	_TSCFSWMEMLI_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	449.86424366563335	3	449.864244	1346.5709	1.0412	0.0004684	-5.482	-0.0024662	-4.4408	-0.0019978	449.86185019048446	24.429	0.096527	24.417	24.393	24.489	-0.012749	1413	64	0.7673241	0.038912714	0.76580465	465.72726	0	23.618073						194	5	4	NaN	NaN	NaN	0.73455	1	18629	18629		2.0359	0	1	20051			27071	3099	15581	16030	21586	21586					-0.08852101763454812
TSCFSWMEMLI	11	Unmodified	_TSCFSWMEMLI_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	674.2927272651501	2	674.292727	1346.5709	0.94733	0.00063877	-3.4787	-0.0023457	-2.5314	-0.0017069	674.2917540543996	24.429	0.16901	24.417	24.344	24.513	-0.012749	1110	70	0.95342636	0.042164862	0.9519069	385.79092	0	17.061462						253	8	5	NaN	NaN	NaN	0.28637	1	18630	18630		26.115	2.7805	1	39117			27072	3099	15581	16030	21587	21587					-0.08852101763454812
TSCSQGAA	8	Unmodified	_TSCSQGAA_					0	0	0			REV__ENST00000294618.11_1_19:11346413-11348365:-|nuORF	REV__ENST00000294618.11_1_19:11346413-11348365:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.2930297352	1	724.29303	723.285753	0.47158	0.00034156	-5.8582	-0.0042431	-5.3867	-0.0039015	724.2886484028436	56.587	0.024025	56.586	56.562	56.586	-0.00056458	600	40	1.2621325	0.023391247	1.2606131	257.58206	0	4.773819						43	2	2	NaN	NaN	NaN	0.84692	1	3577	3577		1.4396	0	1	2622.8	+		27073	11630	15582	16031	21588	21588					-0.08695817790362526
TSDIDVVAL	9	Unmodified	_TSDIDVVAL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.4935036819	1	932.493504	931.486227	1.1295	0.0010532	1.1757	0.0010963	2.3052	0.0021496	932.4943174609116	27.301	0.096519	27.291	27.267	27.363	-0.010126	318	79	1.4304334	0.046308875	1.428914	290.7136	0	9.41156						162	5	2	NaN	NaN	NaN	0.056143	1	6496	6496		44.302	7.7159	1	37003			27074	4306	15583	16032	21589	21589					0.01774355078100598
TSDIDYAL	8	Unmodified	_TSDIDYAL_					0	0	0		ENST00000487288.1_1_7:99711182-99711832:-|nuORF;nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.4200043878001	1	897.420004	896.412728	1.901	0.001706	-0.21425	-0.00019227	1.6868	0.0015137	897.4191887287382	23.658	0.072325	23.658	23.634	23.706	0	381	40	1.3929803	0.02320993	1.3929803	283.26315	0	4.719757						67	4	2	NaN	NaN	NaN	0.54545	1	6005	6005		28.667	12.25	1	5341.1			27075	1594	15584	16033	21590	21590					-0.03962193364372979
TSDIDYAL	8	Unmodified	_TSDIDYAL_					0	0	0		ENST00000487288.1_1_7:99711182-99711832:-|nuORF;nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	897.4200043878001	1	897.420004	896.412728	2.1798	0.0019562	-1.9739	-0.0017714	0.20595	0.00018483	897.4174929596551	23.658	0.12045	23.645	23.621	23.741	-0.013048	378	40	1.3947657	0.02320993	1.3932463	283.62622	0	4.719757						71	6	2	NaN	NaN	NaN	0.54545	1	5890	5890		28.667	10.886	1	4905.8			27076	1594	15584	16033	21591	21591					-0.03962193364372979
TSDPNAVVM	9	Unmodified	_TSDPNAVVM_					0	0	0		nc|ENSG00000167220|Q9H0R4-2|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;ENSG00000167220|ENST00000300605|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4346085945001	1	933.434609	932.427332	1.8334	0.0017113	-0.10607	-9.9012E-05	1.7273	0.0016123	933.434540835445	19.492	0.14396	19.492	19.444	19.588	0	384	61	1.3911947	0.035705566	1.3911947	282.7348	0	7.256531						175	7	2	NaN	NaN	NaN	0.042816	1	6648	6648		49.961	28.126	1	15876			27077	4538	15585	16034	21592	21592					-0.04158444487870838
TSDPNAVVM	9	Unmodified	_TSDPNAVVM_					0	0	0		nc|ENSG00000167220|Q9H0R4-2|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;ENSG00000167220|ENST00000300605|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4346085945001	1	933.434609	932.427332	1.6034	0.0014967	-0.30863	-0.00028809	1.2948	0.0012086	933.4344865494551	19.49	0.14444	19.476	19.428	19.573	-0.014141	378	67	1.3947657	0.03926778	1.3932463	283.4605	0	7.9804688						142	7	2	NaN	NaN	NaN	0.03618	1	6506	6506		52.78	33.616	1	14573			27078	4538	15585	16034	21593	21593					-0.04158444487870838
TSDPNAVVM	9	Oxidation (M)	_TSDPNAVVM(Oxidation (M))_		TSDPNAVVM(1)		TSDPNAVVM(67)	0	0	1		nc|ENSG00000167220|Q9H0R4-2|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;ENSG00000167220|ENST00000300605|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	949.4295232166002	1	949.429523	948.422247	1.7566	0.0016678	0.055546	5.2737E-05	1.8121	0.0017205	949.4299570031918	15.532	0.14385	15.52	15.472	15.616	-0.012202	345	76	1.4143922	0.044591665	1.4128729	287.37872	0	9.060211						211	7	3	NaN	NaN	NaN	0.024221	1	6910	6910		66.656	43.322	1	15818			27079	4538	15585	16035	21594	21594		480			-0.05402748350491038
TSDPTEATAV	10	Unmodified	_TSDPTEATAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.4578464570999	1	991.457846	990.45057	2.245	0.0022258	0.41316	0.00040963	2.6581	0.0026354	991.4581297513791	16.638	0.071972	16.638	16.614	16.686	0	348	46	1.412609	0.026752234	1.412609	286.84198	0	5.432251						74	4	2	NaN	NaN	NaN	0.10964	1	8225	8225		44.638	22.803	1	5815.4			27080	714	15586	16036	21595	21595					-0.04503727169571903
TSDPTEATAV	10	Unmodified	_TSDPTEATAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.4578464570999	1	991.457846	990.45057	2.2493	0.0022301	-1.5002	-0.0014874	0.7491	0.0007427	991.4555396993369	16.634	0.11989	16.621	16.597	16.717	-0.013294	345	43	1.4143922	0.02496469	1.4128729	287.2041	0	5.069275						91	6	2	NaN	NaN	NaN	0.12649	1	8054	8054		42.318	16.203	1	6641.2			27081	714	15586	16036	21596	21596					-0.04503727169571903
TSEGQSKRCK	10	Unmodified	_TSEGQSKRCK_					0	0	0		ENST00000472018.5_1_16:89760470-89762097:+|nuORF;nc|ENSG00000185324|Q15131-3|CDK10;nc|ENSG00000185324|Q15131-7|CDK10;nc|ENSG00000185324|Q15131-2|CDK10;ENSG00000185324|ENST00000353379|CDK10	ENST00000472018.5_1_16:89760470-89762097:+|nuORF	ENST00000472018.5_1_16:89760470-89762097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.27985439295	2	562.279854	1122.54516	1.9083	0.001073	7.4912	0.0042122	9.3995	0.0052852	562.2846378294515	26.215	0.072397	26.204	26.156	26.228	-0.011137	1200	61	0.89836043	0.03678602	0.896841	364.24527	0	14.91507						82	4	2	NaN	NaN	NaN	0.69717	1	13377	13377		8.2448	0.70444	1	10285			27082	5407	15587	16037	21597	21597					-0.011214918992209277
TSEIYVHR	8	Unmodified	_TSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.76162346255	2	502.761623	1003.50869	1.0182	0.0005119	-3.1984	-0.0016081	-2.1803	-0.0010962	502.7599379086761	12.892	0.096047	12.892	12.82	12.916	0	1350	37	0.80618626	0.02218169	0.80618626	327.3427	0	9.006622						97	5	3	NaN	NaN	NaN	0.47456	1	8727	8727		32.453	18.411	1	11302			27083	1043	15588	16038	21598	21598					0.007079992663761914
TSEIYVHR	8	Unmodified	_TSEIYVHR_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.76162346255	2	502.761623	1003.50869	0.9668	0.00048607	-0.82418	-0.00041437	0.14261	7.17E-05	502.7616616808236	12.918	0.21568	12.909	12.837	13.052	-0.00947	1347	46	0.8080346	0.027716637	0.8065152	328.0932	0	11.253998						121	10	2	NaN	NaN	NaN	0.11528	1	8555	8555		61.271	31.236	1	15831			27084	1043	15588	16038	21599	21599					0.007079992663761914
TSEKEIIS	8	Unmodified	_TSEKEIIS_					0	0	0		FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant	FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4778536177001	1	906.477854	905.470577	2.0882	0.0018929	-1.1118	-0.0010078	0.97644	0.00088512	906.4764037150198	22.814	0.09634	22.8	22.776	22.872	-0.01354	375	43	1.3965509	0.024991274	1.3950315	283.94626	0	5.0812073						92	5	2	NaN	NaN	NaN	0.69898	1	6051	6051		19.118	0	1	9496.5			27085	2063	15589	16039	21600	21600					0.01406068561061602
TSETPQPPR	9	Unmodified	_TSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.75653808465	2	506.756538	1011.49852	1.3507	0.00068449	-2.878	-0.0014584	-1.5273	-0.00077395	506.75478559129857	12.748	0.48034	12.748	12.556	13.036	0	1353	91	0.8043377	0.055412292	0.8043377	326.55722	0	22.4971						708	21	3	NaN	NaN	NaN	0.054111	1	9037	9037		45.165	26.047	1	147470			27086	5436	15590	16040	21601	21601					-0.006766084588548438
TSETPQPPR	9	Unmodified	_TSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.75653808465	2	506.756538	1011.49852	1.1564	0.00058603	-1.3567	-0.00068751	-0.20025	-0.00010148	506.7555678817069	12.75	0.57602	12.741	12.476	13.052	-0.00947	1350	91	0.80618626	0.055412292	0.8046668	327.3077	0	22.4971						734	25	4	NaN	NaN	NaN	0.024221	1	8864	8864		66.656	38.868	1	147840			27087	5436	15590	16040	21602	21602					-0.006766084588548438
TSFQRYHEA	9	Unmodified	_TSFQRYHEA_					0	0	0		NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant;ENSG00000205978|ENST00000382554|NYNRIN	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.7674371219501	2	569.767437	1137.52032	1.6682	0.00095047	-8.2224	-0.0046849	-6.5543	-0.0037344	569.7627807689042	29.498	0.169	29.498	29.449	29.618	0	1209	91	0.892844	0.055143297	0.892844	361.95087	0	22.354584						399	8	4	NaN	NaN	NaN	0.33629	1	14363	14363		16.584	1.1215	1	61681			27088	5939	15591	16041	21603	21603					-0.0429380371026582
TSFQRYHEA	9	Unmodified						0	0	0		NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant;ENSG00000205978|ENST00000382554|NYNRIN	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.767437	1137.52032	1.002	0.00057093	-8.3257	-0.0047437	-7.3237	-0.0041728	569.7626225171157	29.521	0.24129	29.514	29.442	29.683	-0.0070648	1206	91	0.894683	0.055137336	0.89316356	362.69638		22.352173	0.0081207	-6.2514E-05	0.00015978	NaN	16.584	380	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79847			27089	5939	15591	16041							-0.0429380371026582
TSGGCACG	8	Unmodified	_TSGGCACG_					0	0	0		ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.2174219511	1	655.217422	654.210145	1.743	0.0011421	-3.403	-0.0022297	-1.66	-0.0010877	655.2150448791778	26.119	0.16896	26.119	25.998	26.167	0	798	109	1.1429502	0.06523168	1.1429502	233.71614	0	13.338882						313	8	2	NaN	NaN	NaN	0.84876	1	2162	2162		0.39566	0	1	31914			27090	7721	15592	16042	21604	21604					-0.13079118242285404
TSGGCACG	8	Unmodified						0	0	0		ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	ENST00000589408.1_3_19:38893886-38894111:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	655.217422	654.210145	2.2562	0.0014783	-6.4503	-0.0042263	-4.1941	-0.002748	655.2139595758609	25.877	0.024137	25.865	25.841	25.865	-0.0116	810	73	1.1356999	0.043501735	1.1341804	232.23358		8.895447	-0.1266	-0.0015939	-0.0043849	NaN	0.39566	68	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3852.4			27091	7721	15592	16042							-0.13079118242285404
TSGGSLVI	8	Unmodified	_TSGGSLVI_					0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.409045771	1	733.409046	732.401769	1.5028	0.0011022	8.2087	0.0060203	9.7115	0.0071225	733.4149795999322	28.388	0.12067	28.388	28.363	28.484	0	582	46	1.2729256	0.026975632	1.2729256	259.72458	0	5.5040283						111	6	2	NaN	NaN	NaN	0.69631	1	3796	3796		19.285	0	1	10337	+		27092	9174	15593	16043	21605	21605					0.024864490520030813
TSGGSLVI	8	Unmodified	_TSGGSLVI_					0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.409045771	1	733.409046	732.401769	1.2275	0.00090029	7.961	0.0058386	9.1885	0.0067389	733.4158168071356	28.411	0.096542	28.402	28.354	28.45	-0.0089798	585	49	1.2711272	0.028772473	1.2696078	259.35764	0	5.8706665						143	5	3	NaN	NaN	NaN	0.76633	1	3717	3717		13.737	0	1	13276	+		27093	9174	15593	16043	21606	21606					0.024864490520030813
TSGGSLVI	8	Unmodified						0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	733.409046	732.401769	1.5028	0.0011022	8.2087	0.0060203	9.7115	0.0071225	733.4149795999322	28.388	0.12067	28.388	28.363	28.484	0	582	46	1.2729256	0.026975632	1.2729256	259.72458		5.5040283	-0.0072195	9.8182E-05	0.0016589	NaN	19.285	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10337	+		27094	9174	15593	16043							0.024864490520030813
TSGGSLVI	8	Unmodified						0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	733.409046	732.401769	1.2275	0.00090029	7.961	0.0058386	9.1885	0.0067389	733.4158168071356	28.411	0.096542	28.402	28.354	28.45	-0.0089798	585	49	1.2711272	0.028772473	1.2696078	259.35764		5.8706665	0.0072195	-8.3524E-05	-0.0016589	NaN	19.285	143	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13276	+		27095	9174	15593	16043							0.024864490520030813
TSGGSSLL	8	Unmodified	_TSGGSSLL_					0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3726602647001	1	721.37266	720.365384	-0.45966	-0.00033159	6.4574	0.0046582	5.9978	0.0043266	721.3767212434934	54.906	0.096054	54.905	54.881	54.977	-0.00061798	555	172	1.2891023	0.10259485	1.2875829	263.10596	0	20.939651						239	5	4	NaN	NaN	NaN	0.84887	1	3522	3522		0.32989	0	1	56193	+		27096	13141	15594	16044	21607	21607					-0.005984278447044744
TSGGSSLL	8	Unmodified						0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	721.37266	720.365384	-0.45966	-0.00033159	6.4574	0.0046582	5.9978	0.0043266	721.3767212434934	54.906	0.096054	54.905	54.881	54.977	-0.00061798	555	172	1.2891023	0.10259485	1.2875829	263.10596		20.939651	-0.0012209	0.00054696	-0.00075972	NaN	0.32989	239	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56193	+		27097	13141	15594	16044							-0.005984278447044744
TSGKPGIL	8	Unmodified	_TSGKPGIL_					0	0	0			REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.4563303146002	1	772.45633	771.449054	-0.16443	-0.00012701	3.819	0.00295	3.6545	0.002823	772.4599395618759	55.795	0.096058	55.794	55.77	55.866	-0.00059128	534	61	1.3016734	0.03590405	1.300154	265.34314	0	7.3189697						116	5	3	NaN	NaN	NaN	0.84876	1	4300	4300		0.39566	0	1	12524	+		27098	9099	15595	16045	21608	21608					0.05418728323013511
TSGKPGIL	8	Unmodified						0	0	0			REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	772.45633	771.449054	1.7701	0.0013673	-1.0028	-0.00077464	0.76724	0.00059266	772.4556078748269	55.797	0.024025	55.797	55.773	55.797	0	531	58	1.3034686	0.034110665	1.3034686	265.7091		6.9533997	0.0013802	-0.001343	0.0016573	NaN	0.39566	64	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10962	+		27099	9099	15595	16045							0.05418728323013511
TSGKPGIL	8	Unmodified						0	0	0			REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	772.45633	771.449054	-0.16443	-0.00012701	3.819	0.00295	3.6545	0.002823	772.4599395618759	55.795	0.096058	55.794	55.77	55.866	-0.00059128	534	61	1.3016734	0.03590405	1.300154	265.34314		7.3189697	-0.0013802	0.0023816	-0.0016573	NaN	0.39566	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12524	+		27100	9099	15595	16045							0.05418728323013511
TSHEAPAM	8	Unmodified	_TSHEAPAM_					0	0	0		nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.3665290293001	1	843.366529	842.359253	0.79943	0.00067421	0.4938	0.00041646	1.2932	0.0010907	843.3672165525554	29.014	0.19304	29.007	28.958	29.151	-0.0077209	492	103	1.3267875	0.060906887	1.325268	270.0644	0	12.39743						247	9	2	NaN	NaN	NaN	0.75682	1	5159	5159		15.013	0	1	24795			27101	2729	15596	16046	21609	21609					-0.06823269347876249
TSIDVDLEM	9	Oxidation (M)	_TSIDVDLEM(Oxidation (M))_		TSIDVDLEM(1)		TSIDVDLEM(120)	0	0	1		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4659683024	1	1038.46597	1037.45869	1.9518	0.0020269	-0.063381	-6.582E-05	1.8885	0.0019611	1038.4667875717964	22.887	0.16876	22.887	22.838	23.007	0	249	76	1.4713576	0.044416666	1.4713576	298.58548	0	9.01358						252	8	4	NaN	NaN	NaN	0.00017726	1	10089	10089		118.2	41.941	1	37058			27102	3172	15597	16047	21610	21610		354			-0.058539162444503745
TSIDVDLEM	9	Oxidation (M)	_TSIDVDLEM(Oxidation (M))_		TSIDVDLEM(1)		TSIDVDLEM(110)	0	0	1		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4659683024	1	1038.46597	1037.45869	1.4134	0.0014678	-0.43606	-0.00045284	0.97737	0.001015	1038.4658483453802	22.886	0.16881	22.872	22.848	23.017	-0.01354	246	67	1.4731345	0.03909707	1.4716152	298.9461	0	7.9340515						262	8	4	NaN	NaN	NaN	0.0018626	1	9881	9881		111.43	45.761	1	38807			27103	3172	15597	16047	21611	21611		354			-0.058539162444503745
TSIVVLVER	9	Unmodified	_TSIVVLVER_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.3109491686	2	508.310949	1014.60735	1.7988	0.00091433	-2.6416	-0.0013428	-0.84287	-0.00042844	508.3094813509706	22.453	0.072149	22.453	22.429	22.501	0	1275	82	0.85233563	0.049765885	0.85233563	346.0299	0	20.203888						108	4	2	NaN	NaN	NaN	0.5168	1	9171	9171		8.9191	1.2365	1	11988			27104	1357	15598	16048	21612	21612					0.10062602511425212
TSIVVLVER	9	Unmodified						0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	508.310949	1014.60735	1.115	0.00056675	-2.3415	-0.0011902	-1.2265	-0.00062346	508.3095744426768	22.452	0.072227	22.438	22.414	22.486	-0.013733	1275	85	0.85233563	0.0516119	0.8508162	346.0299		20.953308	-0.0072106	0.00014394	-0.00075972	NaN	8.9191	119	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11483			27105	1357	15598	16048							0.10062602511425212
TSLLTVPQQYM	11	Unmodified	_TSLLTVPQQYM_					0	0	0		ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.55668444683334	3	427.556684	1279.64822	1.2153	0.00051962	6.6496	0.0028431	7.8649	0.0033627	427.5594280713828	24.767	0.096537	24.767	24.743	24.84	0	1419	34	0.76361835	0.020385087	0.76361835	463.7238	0	12.379272						100	5	3	NaN	NaN	NaN	0.74155	1	18419	18419		1.8502	0	1	9420.8			27106	1136	15599	16049	21613	21613					0.019585757687309524
TSNETITVFPE	11	Unmodified	_TSNETITVFPE_					0	0	0		HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant	HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant	HSPA13|p.S143F|1|0.09|ENSG00000155304|chr21:14378351-14378351|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.20307574090003	3	413.203076	1236.5874	2.7346	0.00113	-0.82452	-0.00034069	1.9101	0.00078926	413.20273597962574	10.637	0.26353	10.637	10.541	10.804	0	1494	52	0.7172283	0.031579494	0.7172283	435.7141	0	19.184448						174	12	2	NaN	NaN	NaN	0.67772	1	17440	17440		4.2106	0	1	26534			27107	7820	15600	16050	21614	21614					-0.021432380098303838
TSNRRTSD	8	Unmodified	_TSNRRTSD_					0	0	0		ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4493474563	1	936.449347	935.442071	1.5234	0.0014265	-1.5414	-0.0014434	-0.017996	-1.6852E-05	936.4486912589477	29.786	0.096491	29.779	29.755	29.852	-0.0070648	1272	43	0.854179	0.02580595	0.8526596	173.58807	0	5.244339						123	5	3	NaN	NaN	NaN	0.84945	1	6587	6587		0	0	1	11326			27108	3909	15601	16051	21615	21615					-0.028232362955350254
TSPGPGPG	8	Unmodified	_TSPGPGPG_					0	0	0		ENST00000572179.5_1_17:3623679-3627129:-|nuORF;ENST00000570360.1_1_17:3626633-3627135:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	335.16375361515003	2	335.163754	668.312954	0.84047	0.0002817	4.4591	0.0014945	5.2996	0.0017762	335.1652158875138	45.021	0.071865	45.033	44.985	45.057	0.011646	1533	34	0.6930556	0.020469368	0.6915362	283.3079	0	8.367462						46	4	2	NaN	NaN	NaN	0.84876	1	2450	2450		0.39566	0	1	5025			27109	7646	15602	16052	21616	21616					-0.034469661876528335
TSPGPGPG	8	Unmodified						0	0	0		ENST00000572179.5_1_17:3623679-3627129:-|nuORF;ENST00000570360.1_1_17:3626633-3627135:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	ENST00000572179.5_1_17:3623679-3627129:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	335.163754	668.312954	1.6859	0.00056507	4.385	0.0014697	6.071	0.0020348	335.1653045555924	44.927	0.047894	44.927	44.903	44.951	0	1530	34	0.6949163	0.020464838	0.6949163	284.06848		8.365662	-0.05268	-2.0392E-05	0.00169	NaN	0.39566	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3232.8			27110	7646	15602	16052							-0.034469661876528335
TSPGYFVLL	9	Unmodified	_TSPGYFVLL_					0	0	0			REV__ENST00000429630.1_1_7:143077188-143077587:-|nuORF	REV__ENST00000429630.1_1_7:143077188-143077587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5400599440001	1	996.54006	995.532783	1.2306	0.0012263	1.749	0.001743	2.9796	0.0029693	996.5410953174359	33.19	0.12066	33.19	33.166	33.287	0	204	58	1.4979934	0.033706546	1.4979934	304.15866	0	6.843933						158	6	3	NaN	NaN	NaN	0.55027	1	8418	8418		7.5404	2.6306	1	13642	+		27111	12145	15603	16053	21617	21617					0.03483839700038516
TSPHSSCL	8	Unmodified	_TSPHSSCL_					0	0	0		ENST00000409645.5_1_2:135208920-135208992:+|nuORF	ENST00000409645.5_1_2:135208920-135208992:+|nuORF	ENST00000409645.5_1_2:135208920-135208992:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.3665290293001	1	831.366529	830.359253	1.0493	0.00087236	1.6488	0.0013708	2.6982	0.0022432	831.368254584037	27.277	0.16894	27.267	27.242	27.411	-0.010126	441	58	1.3572328	0.034001708	1.3557134	276.32556	0	6.922577						144	8	2	NaN	NaN	NaN	0.80071	1	5022	5022		9.1232	0	1	13819			27112	6864	15604	16054	21618	21618					-0.06271269347882935
TSPNVTGLM	9	Unmodified	_TSPNVTGLM_					0	0	0			REV__ENSG00000116771|ENST00000375826|AGMAT	REV__ENSG00000116771|ENST00000375826|AGMAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.4553440366001	1	919.455344	918.448068	1.1449	0.0010527	-0.781	-0.00071809	0.36393	0.00033461	919.4554365023218	31.959	0.12068	31.959	31.935	32.056	0	306	46	1.4375578	0.02671516	1.4375578	292.22195	0	5.4305725						110	6	2	NaN	NaN	NaN	0.49672	1	6386	6386		9.746	0.62279	1	9182.6	+		27113	9228	15605	16055	21619	21619					-0.014418541082136471
TSPNVTGLM	9	Unmodified						0	0	0			REV__ENSG00000116771|ENST00000375826|AGMAT	REV__ENSG00000116771|ENST00000375826|AGMAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	919.455344	918.448068	1.1449	0.0010527	-0.781	-0.00071809	0.36393	0.00033461	919.4554365023218	31.959	0.12068	31.959	31.935	32.056	0	306	46	1.4375578	0.02671516	1.4375578	292.22195		5.4305725	0.0024245	-0.00070814	0.00075972	NaN	9.746	110	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9182.6	+		27114	9228	15605	16055							-0.014418541082136471
TSSAQIIQR	9	Unmodified	_TSSAQIIQR_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.28018035645005	2	502.28018	1002.54581	2.0805	0.001045	-3.1957	-0.0016052	-1.1152	-0.00056014	502.2781711136263	13.901	0.21605	13.901	13.853	14.069	0	1347	31	0.8080346	0.018484712	0.8080346	328.09747	0	7.505615						161	10	3	NaN	NaN	NaN	0.030696	1	8707	8707		58.2	5.4199	1	23641			27115	849	15606	16056	21620	21620					0.04463670812151577
TSSAQIIQR	9	Unmodified	_TSSAQIIQR_					0	0	0		ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	ENST00000265882.5_1_2:80389676-80390174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.28018035645005	2	502.28018	1002.54581	1.2142	0.00060986	-2.0722	-0.0010408	-0.85806	-0.00043099	502.2788793939705	13.901	0.16782	13.89	13.842	14.01	-0.010672	1344	37	0.8098828	0.022179246	0.8083634	328.8479	0	9.005737						157	8	3	NaN	NaN	NaN	0.03618	1	8530	8530		52.78	5.2982	1	22094			27116	849	15606	16056	21621	21621					0.04463670812151577
TSSAVTSVAK	10	Unmodified	_TSSAVTSVAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.76128911155	2	475.761289	949.508025	1.0199	0.00048524	-1.99	-0.00094676	-0.97006	-0.00046152	475.7603541589085	12.652	0.33619	12.652	12.556	12.892	0	1368	61	0.7950918	0.036985517	0.7950918	323.08612	0	15.029083						403	15	4	NaN	NaN	NaN	0.080496	1	7080	7080		48.65	7.6934	1	85620			27117	4437	15607	16057	21622	21622					0.03125159826674917
TSSAVTSVAK	10	Unmodified						0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	475.761289	949.508025	0.78341	0.00037272	-1.678	-0.00079833	-0.8946	-0.00042562	475.76032171940795	12.678	0.43204	12.669	12.548	12.98	-0.00947	1368	58	0.7950918	0.035134315	0.79357237	323.08612		14.276855	0.0082798	0.00015496	-0.00075972	NaN	48.65	460	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93160			27118	4437	15607	16057							0.03125159826674917
TSSGAGSP	8	Unmodified	_TSSGAGSP_					0	0	0		ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.2944099437	1	663.29441	662.287133	2.441	0.0016191	-10.146	-0.0067299	-7.7052	-0.0051108	663.2862049483473	29.642	0.096502	29.635	29.586	29.683	-0.0070648	1116	52	0.94976085	0.03115189	0.9482414	194.16336	0	6.3684998						45	5	2	NaN	NaN	NaN	0.84727	1	2290	2290		1.2418	0	1	2699.5			27119	4272	15608	16058	21623	21623					-0.05751860429950284
TSSGGACC	8	Unmodified	_TSSGGACC_					0	0	0		ENST00000449408.6_2_19:17657549-17660258:+|nuORF;ENST00000600519.5_1_19:17657549-17662707:+|nuORF	ENST00000449408.6_2_19:17657549-17660258:+|nuORF	ENST00000449408.6_2_19:17657549-17660258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.2279866373999	1	685.227987	684.22071	2.3806	0.0016313	-3.4222	-0.002345	-1.0415	-0.0007137	685.225390765725	26.094	0.19307	26.094	26.046	26.239	0	756	94	1.1683017	0.056096554	1.1683017	238.68556	0	11.460571						364	9	2	NaN	NaN	NaN	0.84945	1	2921	2921		0	0	1	42472			27120	7035	15609	16059	21624	21624					-0.13403135587873294
TSSMKLITVM	10	Unmodified	_TSSMKLITVM_					0	0	0			REV__nc|ENSG00000181282|Q8NH89|OR5AK3P	REV__nc|ENSG00000181282|Q8NH89|OR5AK3P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7985027473001	2	555.798503	1109.58245	1.8381	0.0010216	7.7728	0.0043201	9.6109	0.0053417	556.3050498438338	55.22	0.14425	55.22	55.172	55.316	0	1221	61	0.885486	0.036801934	0.885486	359.07614	0	14.923645						626	7	8	NaN	NaN	NaN	0.77421	1	13274	13274		1.9246	0.22244	1	263990	+		27121	13183	15610	16060	21625	21625					0.03204463322185802
TSSPPDKVL	9	Unmodified	_TSSPPDKVL_					0	0	0		ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	ENSG00000163961|ENST00000318037|RNF168	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.25838228184995	2	472.258382	942.502212	1.3485	0.00063686	-0.70488	-0.00033288	0.64367	0.00030398	472.25732918161594	15.75	0.16795	15.75	15.702	15.87	0	1368	40	0.7950918	0.024047077	0.7950918	323.1204	0	9.772583						120	8	2	NaN	NaN	NaN	0.25424	1	6881	6881		21.85	0.01541	1	16687			27122	4280	15611	16061	21626	21626					0.028660613149895653
TSTGFGGG	8	Unmodified	_TSTGFGGG_					0	0	0		ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	ENSG00000067445|ENST00000173898|TRO	ENSG00000067445|ENST00000173898|TRO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.15338589410004	2	342.153386	682.292219	1.3008	0.00044507	3.9718	0.001359	5.2726	0.001804	342.154532623035	30.656	0.072378	30.656	30.656	30.728	0	1518	70	0.7023569	0.042794883	0.7023569	286.99237	0	17.486542						59	4	2	NaN	NaN	NaN	0.84692	1	2877	2877		1.4396	0	1	6041.9			27123	718	15612	16062	21627	21627					-0.06163556567321393
TSTKGTGT	8	Unmodified	_TSTKGTGT_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19;REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	752.3784739241001	1	752.378474	751.371197	1.5492	0.0011656	6.5408	0.0049211	8.09	0.0060867	752.3839422818896	26.504	0.14475	26.494	26.47	26.614	-0.010645	552	61	1.2908988	0.03593862	1.2893794	263.2696	0	7.3294067						136	7	2	NaN	NaN	NaN	0.84897	1	4005	4005		0.27539	0	1	12044			27124	9113;5930	15613	16063	21628	21628					-0.014433293330284869
TSTSSGGL	8	Unmodified	_TSTSSGGL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3362747584002	1	709.336275	708.328998	0.87812	0.00062288	7.239	0.0051349	8.1171	0.0057577	709.3414745026543	20.67	0.16875	20.656	20.584	20.752	-0.014086	648	61	1.2333171	0.03605783	1.2317977	251.8	0	7.3617554						140	8	2	NaN	NaN	NaN	0.84887	1	3320	3320		0.32989	0	1	14656			27125	1772	15614	16064	21629	21629					-0.036833047414006614
TSVAKVVR	8	Unmodified	_TSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.27162704285	2	430.271627	858.528701	2.5646	0.0011035	-2.4085	-0.0010363	0.15608	6.7157E-05	430.27028466807894	14.069	0.047956	14.058	14.01	14.058	-0.010672	1416	25	0.76547134	0.014823079	0.7639519	311.5197	0	6.0324707						33	3	2	NaN	NaN	NaN	0.83582	1	5388	5388		4.4131	1.6279	1	1659.2			27126	4437	15615	16065	21630	21630					0.09377794996987632
TSVPVVTP	8	Unmodified	_TSVPVVTP_					0	0	0		nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000065609|O60641-4|SNAP91	nc|ENSG00000065609|O60641-4|SNAP91	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	799.4559959636	1	799.455996	798.448719	1.8849	0.0015069	-0.37627	-0.00030081	1.5087	0.0012061	799.4566159636795	21.031	0.04817	21.017	20.993	21.041	-0.014086	549	43	1.292695	0.025143623	1.2911756	263.35718	0	5.1224365						57	3	2	NaN	NaN	NaN	0.74229	1	4645	4645		16.417	2.6796	1	3713.8			27127	689	15616	16066	21631	21631					0.0414330860313612
TTAAGKKV	8	Unmodified	_TTAAGKKV_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.23725290925	2	388.237253	774.459953	-0.22715	-8.8187E-05	9.154	0.0035539	8.9269	0.0034658	388.24102321687553	53.713	0.25009	53.712	53.623	53.873	-0.00059128	1347	166	0.8080346	0.101771	0.8065152	329.40216	0	41.487823						410	10	3	NaN	NaN	NaN	0.84455	1	4351	4351		2.7852	0	1	114790			27128	13904	15617	16067	21632	21632					0.06370130697280274
TTAAGKKV	8	Unmodified						0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	388.237253	774.459953	1.6755	0.00065048	6.5811	0.002555	8.2565	0.0032055	388.2402949157669	53.674	0.25011	53.674	53.626	53.876	0	1350	109	0.80618626	0.06662446	0.80618626	328.64865		27.160034	-0.019158	-0.0010744	-0.00016447	NaN	2.7852	368	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98475			27129	13904	15617	16067							0.06370130697280274
TTAASTGG	8	Unmodified	_TTAASTGG_					0	0	0			REV__ENSG00000119919|ENST00000344586|NKX2-3	REV__ENSG00000119919|ENST00000344586|NKX2-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.1586682372501	2	333.158668	664.302784	1.5165	0.00050525	-0.14376	-4.7895E-05	1.3728	0.00045735	333.15886514282215	32.73	0.12067	32.727	32.679	32.8	-0.0031052	1479	43	0.72651637	0.026002407	0.7249969	297.02185	0	10.630554						92	6	2	NaN	NaN	NaN	0.84887	1	2339	2339		0.32989	0	1	7426.5	+		27130	9302	15618	16068	21633	21633					-0.042795739128791865
TTAASTGG	8	Unmodified						0	0	0			REV__ENSG00000119919|ENST00000344586|NKX2-3	REV__ENSG00000119919|ENST00000344586|NKX2-3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.158668	664.302784	1.3729	0.0004574	0.99339	0.00033096	2.3663	0.00078836	333.15897635525613	32.732	0.12063	32.732	32.707	32.828	0	1485	46	0.72280174	0.027861238	0.72280174	295.5032		11.390503	0.0020855	0.00032821	-0.0010976	NaN	0.32989	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7519.2	+		27131	9302	15618	16068							-0.042795739128791865
TTAASTGG	8	Unmodified						0	0	0			REV__ENSG00000119919|ENST00000344586|NKX2-3	REV__ENSG00000119919|ENST00000344586|NKX2-3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	333.158668	664.302784	1.5165	0.00050525	-0.14376	-4.7895E-05	1.3728	0.00045735	333.15886514282215	32.73	0.12067	32.727	32.679	32.8	-0.0031052	1479	43	0.72651637	0.026002407	0.7249969	297.02185		10.630554	-0.0020855	-0.0004295	0.0010976	NaN	0.32989	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7426.5	+		27132	9302	15618	16068							-0.042795739128791865
TTAATTTA	8	Unmodified	_TTAATTTA_					0	0	0		MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant;ENSG00000117983|ENST00000529681|MUC5B	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3675748868	1	737.367575	736.360298	1.8863	0.0013909	6.4027	0.0047211	8.2889	0.006112	737.3732242137058	26.263	0.14481	26.263	26.215	26.36	0	588	61	1.2693287	0.035977006	1.2693287	258.9651	0	7.33992						179	7	3	NaN	NaN	NaN	0.84455	1	3851	3851		2.7852	1.5433	1	16266			27133	2160	15619	16069	21634	21634					-0.018427317073360427
TTAATTTA	8	Unmodified						0	0	0		MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant;ENSG00000117983|ENST00000529681|MUC5B	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	737.367575	736.360298	1.8447	0.0013602	5.2138	0.0038445	7.0586	0.0052047	737.3714009835221	26.263	0.1206	26.252	26.228	26.349	-0.011137	585	82	1.2711272	0.048576713	1.2696078	259.33203		9.910507	-0.0056729	-0.00029095	0.00013956	NaN	2.7852	164	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16176			27134	2160	15619	16069							-0.018427317073360427
TTADMIYSRV	10	Unmodified	_TTADMIYSRV_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7869809333	2	578.786981	1155.55941	1.5873	0.0009187	-2.9127	-0.0016858	-1.3254	-0.00076713	578.785530613703	20.357	0.048061	20.357	20.333	20.381	0	1215	55	0.8891654	0.033100247	0.8891654	360.39218	0	13.416016						118	3	3	NaN	NaN	NaN	0.28676	1	15004	15004		28.296	10.326	1	20551			27135	13662	15620	16070	21635	21635					-0.01214839470935658
TTADMIYSRV	10	Unmodified	_TTADMIYSRV_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7869809333	2	578.786981	1155.55941	1.3795	0.00079846	-3.2898	-0.0019041	-1.9103	-0.0011057	579.285837286142	20.381	0.072266	20.367	20.319	20.391	-0.014141	1212	55	0.8910048	0.033103883	0.88948536	361.1377	0	13.41748						120	4	3	NaN	NaN	NaN	0.26776	1	14504	14504		29.706	6.5886	1	19285			27136	13662	15620	16070	21636	21636					-0.01214839470935658
TTAENEFVM	9	Unmodified	_TTAENEFVM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.4557379671	1	1041.45574	1040.44846	1.9276	0.0020075	2.8329	0.0029503	4.7605	0.0049578	1041.4587305976402	23.369	0.19299	23.369	23.32	23.513	0	219	76	1.4891195	0.04440248	1.4891195	302.17856	0	9.010376						278	9	4	NaN	NaN	NaN	0.048656	1	10218	10218		47.482	25.647	1	28683		+	27137	219	15621	16071	21637	21637					-0.07014479179019872
TTAENEFVM	9	Unmodified	_TTAENEFVM_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.4557379671	1	1041.45574	1040.44846	1.8126	0.0018878	2.043	0.0021277	3.8556	0.0040154	1041.4581171463453	23.392	0.14485	23.379	23.355	23.5	-0.013296	219	79	1.4891195	0.046161532	1.4876001	302.17856	0	9.36731						172	7	2	NaN	NaN	NaN	0.064504	1	9999	9999		40.957	10.166	1	27042		+	27138	219	15621	16071	21638	21638					-0.07014479179019872
TTAENEFVM	9	Oxidation (M)	_TTAENEFVM(Oxidation (M))_		TTAENEFVM(1)		TTAENEFVM(47)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.2289645279001	2	529.228965	1056.44338	2.2015	0.0011651	-0.67209	-0.00035569	1.5294	0.00080942	529.228512136629	18.724	0.23994	18.724	18.652	18.892	0	1299	55	0.8375814	0.03321141	0.8375814	339.85977	0	13.475952						265	11	4	NaN	NaN	NaN	0.04947	1	10917	10917		47.136	26.183	1	37228		+	27139	219	15621	16072	21639	21639		16			-0.08258783041628703
TTAENEFVM	9	Oxidation (M)	_TTAENEFVM(Oxidation (M))_		TTAENEFVM(1)		TTAENEFVM(96)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.4506525892	1	1057.45065	1056.44338	2.5014	0.0026451	-0.9274	-0.00098068	1.574	0.0016644	1057.4503526620583	18.724	0.16801	18.724	18.676	18.844	0	231	58	1.4820169	0.033745885	1.4820169	300.6777	0	6.846527						203	8	3	NaN	NaN	NaN	0.0080618	1	10918	10918		96.341	61.902	1	14658		+	27140	219	15621	16072	21640	21640		16			-0.08258783041628703
TTAENEFVM	9	Oxidation (M)	_TTAENEFVM(Oxidation (M))_		TTAENEFVM(1)		TTAENEFVM(47)	0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.4506525892	1	1057.45065	1056.44338	1.9758	0.0020893	0.062006	6.5569E-05	2.0378	0.0021549	1057.4508254728676	18.722	0.16798	18.708	18.66	18.828	-0.014059	228	52	1.4837929	0.030187368	1.4822735	301.038	0	6.1245117						171	8	2	NaN	NaN	NaN	0.048656	1	10696	10696		47.482	16.871	1	15665		+	27141	219	15621	16072	21641	21641		16			-0.08258783041628703
TTAENEFVM	9	Oxidation (M)						0	0	1		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.228965	1056.44338	1.3836	0.00073221	-0.89218	-0.00047217	0.49137	0.00026005	529.2281286741611	18.746	0.21603	18.731	18.66	18.876	-0.014059	1302	55	0.8357362	0.033218563	0.8342168	339.11105		13.478882	0.0036189	-0.00011301	-0.0016823	NaN	47.136	260	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36459		+	27142	219	15621	16072				16			-0.08258783041628703
TTAEREIVR	9	Unmodified	_TTAEREIVR_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7987372503501	2	537.798737	1073.58292	1.7706	0.00095225	-2.2836	-0.0012281	-0.51297	-0.00027587	537.7976364625368	12.1	0.16809	12.1	12.028	12.196	0	1251	43	0.8670771	0.0257864	0.8670771	351.75574	0	10.461029						209	8	3	NaN	NaN	NaN	0.1507	1	11726	11726		28.495	10.526	1	39250			27143	841;3442	15622	16073	21642	21642					0.04907342357910238
TTAEREIVR	9	Unmodified	_TTAEREIVR_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2	ENSG00000143632|ENST00000366684|ACTA1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7987372503501	2	537.798737	1073.58292	1.0171	0.00054701	-0.70192	-0.00037749	0.3152	0.00016952	537.7981922470502	12.102	0.168	12.094	12.046	12.214	-0.0081863	1251	43	0.8670771	0.025783658	0.8655577	351.75574	0	10.459869						226	8	3	NaN	NaN	NaN	0.3106	1	11421	11421		18.233	0.2638	1	42040			27144	841;3442	15622	16073	21643	21643					0.04907342357910238
TTAGGVPVTR	10	Unmodified	_TTAGGVPVTR_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.76944849464996	2	479.769448	957.524344	2.0716	0.00099391	-2.5313	-0.0012145	-0.45968	-0.00022054	479.76873756637883	13.541	0.19213	13.541	13.469	13.661	0	1362	73	0.79879075	0.04435861	0.79879075	324.5504	0	18.02298						217	9	3	NaN	NaN	NaN	0.5544	1	7281	7281		17.198	0.34012	1	26883			27145	1951	15623	16074	21644	21644					0.043882857834205424
TTAGGVPVTR	10	Unmodified	_TTAGGVPVTR_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	479.76944849464996	2	479.769448	957.524344	1.4748	0.00070754	-1.5702	-0.00075333	-0.095436	-4.5787E-05	479.7690544101199	13.541	0.11995	13.531	13.483	13.603	-0.010098	1362	67	0.79879075	0.04066205	0.7972713	324.5504	0	16.521057						182	6	3	NaN	NaN	NaN	0.6262	1	7144	7144		13.101	1.0525	1	24859			27146	1951	15623	16074	21645	21645					0.043882857834205424
TTANGKVFRI	10	Unmodified	_TTANGKVFRI_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.5487406171667	3	369.548741	1105.62439	1.498	0.00055357	1.1622	0.00042949	2.6602	0.00098306	369.54923594613047	22.235	0.12063	22.222	22.173	22.294	-0.013731	1422	34	0.7617651	0.020385087	0.7602457	463.37378	0	12.400024						90	6	2	NaN	NaN	NaN	0.75966	1	12740	12740		1.6985	0	1	8646.2			27147	232	15624	16075	21646	21646					0.07580523117235316
TTAPTPAAR	9	Unmodified	_TTAPTPAAR_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	443.24306656864997	2	443.243067	884.47158	1.114	0.00049376	-2.8691	-0.0012717	-1.7552	-0.00077797	443.2418009837856	12.076	0.14404	12.076	11.98	12.124	0	1410	37	0.76917666	0.022225022	0.76917666	312.8832	0	9.040619						100	7	2	NaN	NaN	NaN	0.25548	1	5865	5865		21.771	4.9128	1	7455.3			27148	995	15625	16076	21647	21647					0.024723277206135208
TTASGPQSFH	10	Unmodified	_TTASGPQSFH_					0	0	0			REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7408880204501	2	516.740888	1031.46722	1.4587	0.00075376	-10.136	-0.0052377	-8.6774	-0.004484	516.7356109762607	19.418	0.096165	19.404	19.38	19.476	-0.014141	1332	37	0.8172735	0.022167265	0.81575406	331.7229	0	8.997498						98	5	3	NaN	NaN	NaN	0.6772	1	9621	9621		9.6116	0.64966	1	11178	+		27149	10937	15626	16077	21648	21648					-0.04725181492926822
TTASGPQSFH	10	Unmodified						0	0	0			REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.740888	1031.46722	1.4587	0.00075376	-10.136	-0.0052377	-8.6774	-0.004484	516.7356109762607	19.418	0.096165	19.404	19.38	19.476	-0.014141	1332	37	0.8172735	0.022167265	0.81575406	331.7229		8.997498	-0.0079587	0.00031429	-0.00075972	NaN	9.6116	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11178	+		27150	10937	15626	16077							-0.04725181492926822
TTASSGPT	8	Unmodified	_TTASSGPT_					0	0	0			REV__ENST00000411631.2_7:72711017-72715158:+|nuORF	REV__ENST00000411631.2_7:72711017-72715158:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3362747584	1	721.336275	720.328998	2.2247	0.0016048	6.0626	0.0043732	8.2873	0.005978	721.3408761743597	23.248	0.40987	23.248	23.176	23.586	0	636	178	1.2405256	0.10649049	1.2405256	253.19168	0	21.734726						1143	18	4	NaN	NaN	NaN	0.80071	1	3590	3590		9.1232	3.0329	1	528580	+		27151	11413	15627	16078	21649	21649					-0.04235304741428081
TTASVVIIR	9	Unmodified	_TTASVVIIR_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.29784179335	2	480.297842	958.581131	2.0387	0.00097917	-1.1134	-0.00053477	0.92526	0.0004444	480.29698059072945	18.82	0.072044	18.82	18.796	18.868	0	1275	97	0.85233563	0.05904883	0.85233563	346.3004	0	23.991302						136	4	3	NaN	NaN	NaN	0.40649	1	7304	7304		13.463	6.5998	1	13582			27152	4748	15628	16079	21650	21650					0.10018333339951369
TTASVVIIR	9	Unmodified	_TTASVVIIR_					0	0	0		nc|ENSG00000170836|O15297-2|PPM1D;PPM1D|p.P437Tfs*6|1|0.53|ENSG00000170836|chr17:60663040-60663041|-/T|frameshift_variant;PPM1D|p.T517Lfs*5|1|0.3|ENSG00000170836|chr17:60663282-60663282|A/-|frameshift_variant;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.29784179335	2	480.297842	958.581131	2.0574	0.00098819	-1.8449	-0.00088608	0.21258	0.0001021	480.29683063021326	18.842	0.096144	18.828	18.804	18.9	-0.014059	1275	52	0.85233563	0.031344235	0.8508162	346.3004	0	12.735016						104	5	3	NaN	NaN	NaN	0.60736	1	7164	7164		5.1889	2.4037	1	9995.2			27153	4748	15628	16079	21651	21651					0.10018333339951369
TTATDMWNI	9	Unmodified	_TTATDMWNI_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7394994244501	2	526.739499	1051.46445	2.2621	0.0011915	5.4903	0.002892	7.7524	0.0040835	526.7424693329435	23.441	0.33764	23.427	23.379	23.717	-0.013294	1299	106	0.8375814	0.06459516	0.83606195	339.88043	0	26.211945						837	15	4	NaN	NaN	NaN	0.032826	1	10458	10458		55.413	2.789	1	535750			27154	921	15629	16080	21652	21652					-0.059227729421081676
TTAVSNLVSR	10	Unmodified	_TTAVSNLVSR_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.2932877317	2	524.293288	1046.57202	1.5464	0.00081075	-2.706	-0.0014187	-1.1596	-0.00060797	524.2923860177817	16.83	0.1439	16.83	16.782	16.925	0	1263	40	0.85970795	0.02395612	0.85970795	348.88025	0	9.72171						142	7	3	NaN	NaN	NaN	0.65742	1	10497	10497		10.965	0.60495	1	15470			27155	6550	15630	16081	21653	21653					0.050599399836073644
TTAVSNLVSR	10	Unmodified	_TTAVSNLVSR_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.2932877317	2	524.293288	1046.57202	1.5594	0.00081759	1.0794	0.00056594	2.6388	0.0013835	524.2924372406724	16.826	0.1678	16.813	16.789	16.957	-0.013294	1263	49	0.85970795	0.029476583	0.8581885	348.88022	0	11.961945						137	8	3	NaN	NaN	NaN	0.47025	1	10290	10290		20.688	10.083	1	20199			27156	6550	15630	16081	21654	21654					0.050599399836073644
TTECAKVLF	9	Unmodified	_TTECAKVLF_					0	0	0		ENST00000422998.1_1_1:197643261-197744719:-|nuORF	ENST00000422998.1_1_1:197643261-197744719:-|nuORF	ENST00000422998.1_1_1:197643261-197744719:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5179442934	1	1011.51794	1010.51067	2.065	0.0020888	-2.9777	-0.003012	-0.91276	-0.00092327	1011.5160438725827	25.177	0.096539	25.165	25.141	25.238	-0.012011	186	52	1.5086359	0.030145764	1.5071164	306.25757	0	6.11969						94	5	2	NaN	NaN	NaN	0.51576	1	8824	8824		8.962	0.67169	1	8096.8			27157	6925	15631	16082	21655	21655					0.0058329195995838745
TTEEDSVLLM	10	Unmodified	_TTEEDSVLLM_					0	0	0		ENSG00000067445|ENST00000173898|TRO;nc|ENSG00000067445|Q12816-2|TRO	ENSG00000067445|ENST00000173898|TRO	ENSG00000067445|ENST00000173898|TRO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.8496450506	3	379.849645	1136.52711	1.5458	0.00058717	8.116	0.0030829	9.6618	0.00367	379.8525235020689	15.316	0.14386	15.304	15.256	15.4	-0.012202	1473	61	0.7302302	0.037150323	0.7287108	444.04288	0	22.590576						194	7	3	NaN	NaN	NaN	0.69717	1	13861	13861		6.6174	0	1	24375			27158	718	15632	16083	21656	21656					-0.03569671664604357
TTGASSDF	8	Unmodified	_TTGASSDF_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3311893805001	1	785.331189	784.323913	1.3775	0.0010818	4.2042	0.0033017	5.5817	0.0043835	785.3344576503792	31.259	0.31369	31.259	31.211	31.525	0	555	154	1.2891023	0.091736674	1.2891023	262.70517	0	18.694931						905	14	4	NaN	NaN	NaN	0.62311	1	4554	4554		23.85	0	1	295860			27159	3040	15633	16084	21657	21657					-0.07687608604032903
TTHSRCMQ	8	Unmodified	_TTHSRCMQ_					0	0	0		ENST00000409185.5_1_2:131810576-131840200:-|nuORF	ENST00000409185.5_1_2:131810576-131840200:-|nuORF	ENST00000409185.5_1_2:131810576-131840200:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	482.21038623175	2	482.210386	962.40622	2.5476	0.0012285	-1.802	-0.00086892	0.74569	0.00035958	482.2099013258915	15.484	0.11985	15.472	15.448	15.568	-0.012201	1353	52	0.8043377	0.031425714	0.80281824	326.78067	0	12.767426						94	6	2	NaN	NaN	NaN	0.81251	1	7234	7234		7.5404	0	1	5719			27160	6855	15634	16085	21658	21658					-0.07648733068390356
TTKGGSGG	8	Unmodified	_TTKGGSGG_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.3260444231001	1	664.326044	663.318768	1.7131	0.001138	6.4998	0.004318	8.2129	0.005456	664.3304970530969	19.348	0.14393	19.348	19.276	19.42	0	744	79	1.1755381	0.047046065	1.1755381	240.31224	0	9.617523						228	7	3	NaN	NaN	NaN	0.82797	1	2412	2412		5.4659	0	1	30277	+		27161	10720	15635	16086	21659	21659					-0.02635867675985537
TTKGGSGG	8	Unmodified	_TTKGGSGG_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.3260444231001	1	664.326044	663.318768	1.9272	0.0012803	5.947	0.0039508	7.8742	0.005231	664.3300086646645	19.346	0.26452	19.332	19.284	19.549	-0.014141	744	64	1.1755381	0.03798449	1.1740186	240.31224	0	7.7650757						333	12	2	NaN	NaN	NaN	0.84455	1	2328	2328		2.7852	0	1	36286	+		27162	10720	15635	16086	21660	21660					-0.02635867675985537
TTKGGSGG	8	Unmodified						0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	664.326044	663.318768	1.7131	0.001138	6.4998	0.004318	8.2129	0.005456	664.3304970530969	19.348	0.14393	19.348	19.276	19.42	0	744	79	1.1755381	0.047046065	1.1755381	240.31224		9.617523	0.0080106	0.00019228	0.00075972	NaN	5.4659	228	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30277	+		27163	10720	15635	16086							-0.02635867675985537
TTKGGSGG	8	Unmodified						0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	664.326044	663.318768	1.9272	0.0012803	5.947	0.0039508	7.8742	0.005231	664.3300086646645	19.346	0.26452	19.332	19.284	19.549	-0.014141	744	64	1.1755381	0.03798449	1.1740186	240.31224		7.7650757	-0.0080106	-0.00017496	-0.00075972	NaN	5.4659	333	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36286	+		27164	10720	15635	16086							-0.02635867675985537
TTLGPPGP	8	Unmodified	_TTLGPPGP_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.3984810847	1	739.398481	738.391205	2.0422	0.00151	5.1353	0.003797	7.1776	0.0053071	739.4018809726205	30.27	0.33784	30.27	30.222	30.56	0	510	244	1.316029	0.14571536	1.316029	268.47928	0	29.726929						1341	15	4	NaN	NaN	NaN	0.72043	1	3892	3892		17.78	0	1	534610	+		27165	9039	15636	16087	21661	21661					0.011544663975655567
TTLGPPGP	8	Unmodified						0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-3|RAI1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.398481	738.391205	2.0422	0.00151	5.1353	0.003797	7.1776	0.0053071	739.4018809726205	30.27	0.33784	30.27	30.222	30.56	0	510	244	1.316029	0.14571536	1.316029	268.47928		29.726929	0.0036863	0.00012452	0.00075972	NaN	17.78	1341	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534610	+		27166	9039	15636	16087							0.011544663975655567
TTLHHAFLAL	10	Unmodified	_TTLHHAFLAL_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.31656586275	2	562.316566	1122.61858	1.7833	0.0010028	1.5088	0.0008484	3.2921	0.0018512	562.3173627023893	25.105	0.12065	25.105	25.009	25.129	0	1212	94	0.8910048	0.057002902	0.8910048	361.26263	0	23.112152						171	6	2	NaN	NaN	NaN	0.67523	1	13802	13802		9.746	0	1	21735			27167	5702	15637	16088	21662	21662					0.06217424605551969
TTLLCKQKLVA	11	Unmodified	_TTLLCKQKLVA_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3679411187501	2	609.367941	1216.72133	0.84994	0.00051793	5.1846	0.0031593	6.0345	0.0036772	609.3710703293309	39.668	0.12057	39.673	39.673	39.794	0.0053368	1176	100	0.9130621	0.060654342	0.91154265	369.85834	0	24.56955						321	6	5	NaN	NaN	NaN	0.77378	1	16238	16238		1.3312	0	1	86940	+		27168	9177	15638	16089	21663	21663					0.12163749282012759
TTLLLKII	8	Unmodified	_TTLLLKII_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.6284810208002	1	914.628481	913.621205	1.6395	0.0014995	-0.16687	-0.00015263	1.4726	0.0013469	914.6270855134231	55.722	0.048203	55.722	55.698	55.746	-0.00059128	162	25	1.5228153	0.0141733885	1.5212959	309.57697	0	2.8813477						26	3	2	NaN	NaN	NaN	0.84945	1	6185	6185		0	0	1	1293.5	+		27169	12379	15639	16090	21664	21664					0.1609388001052139
TTLVSAAA	8	Unmodified	_TTLVSAAA_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	733.409045771	1	733.409046	732.401769	1.5274	0.0011202	7.7238	0.0056647	9.2512	0.0067849	733.4142832422716	48.211	0.16792	48.211	48.139	48.307	0	501	61	1.3214091	0.03586197	1.3214091	269.61703	0	7.317169						210	8	3	NaN	NaN	NaN	0.84727	1	3795	3795		1.2418	0	1	22106	+		27170	8582	15640	16091	21665	21665					0.024864490520030813
TTLVSAAA	8	Unmodified						0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	733.409046	732.401769	1.5274	0.0011202	7.7238	0.0056647	9.2512	0.0067849	733.4142832422716	48.211	0.16792	48.211	48.139	48.307	0	501	61	1.3214091	0.03586197	1.3214091	269.61703		7.317169	0.010285	-0.00045108	-0.00013678	NaN	1.2418	210	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22106	+		27171	8582	15640	16091							0.024864490520030813
TTLVVSGG	8	Unmodified	_TTLVVSGG_					0	0	0		TMEM14B|p.A20T|1|0.05|ENSG00000137210|chr6:10749656-10749656|G/A|missense_variant	TMEM14B|p.A20T|1|0.05|ENSG00000137210|chr6:10749656-10749656|G/A|missense_variant	TMEM14B|p.A20T|1|0.05|ENSG00000137210|chr6:10749656-10749656|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.4090457710003	1	733.409046	732.401769	-0.35879	-0.00026314	9.2511	0.0067848	8.8923	0.0065217	733.4152681870863	48.185	0.23966	48.19	48.118	48.358	0.004818	498	73	1.3232021	0.043048143	1.3216827	269.98285	0	8.783447						264	11	3	NaN	NaN	NaN	0.84887	1	3716	3716		0.32989	0	1	28642			27172	13717	15641	16092	21666	21666					0.024864490520258187
TTMPGKAS	8	Unmodified	_TTMPGKAS_					0	0	0			REV__ENST00000463465.1_1_1:43223571-43224973:-|nuORF	REV__ENST00000463465.1_1_1:43223571-43224973:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	792.3920154983	1	792.392015	791.384739	1.4147	0.001121	1.0684	0.00084659	2.4831	0.0019676	792.3928560983255	30.221	0.26543	30.214	30.166	30.431	-0.0064106	540	112	1.2980826	0.066440344	1.2965631	264.49466	0	13.53775						620	12	3	NaN	NaN	NaN	0.7718	1	4550	4550		13.003	0	1	111290	+		27173	12279	15642	16093	21667	21667					-0.019297948254575203
TTMPLEMPEK	10	Unmodified	_TTMPLEMPEK_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7855923372999	2	588.785592	1175.55663	2.0742	0.0012213	4.3934	0.0025868	6.4677	0.0038081	588.7885423470565	23.224	0.14468	23.224	23.103	23.248	0	1191	70	0.90387505	0.042269647	0.90387505	366.28067	0	17.12909						196	7	3	NaN	NaN	NaN	0.70677	1	15660	15660		7.5876	1.3374	1	35112			27174	4088	15643	16094	21668	21668					-0.024124309201170036
TTNASCDR	8	Unmodified	_TTNASCDR_					0	0	0			REV__nc|ENSG00000167755|Q92876-2|KLK6	REV__nc|ENSG00000167755|Q92876-2|KLK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.3625062839001	1	867.362506	866.35523	1.4577	0.0012643	-4.3462	-0.0037697	-2.8885	-0.0025054	867.3589056925391	27.036	0.21722	27.036	26.988	27.205	0	366	61	1.4019053	0.03569424	1.4019053	285.22754	0	7.262268						266	10	3	NaN	NaN	NaN	0.81216	1	5617	5617		7.5876	0.72439	1	27891	+		27175	10479	15644	16095	21669	21669					-0.08329358841592693
TTPIFANRR	9	Unmodified	_TTPIFANRR_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.30398980375	2	538.30399	1074.59343	1.3813	0.00074353	-2.7014	-0.0014542	-1.3202	-0.00071066	538.303526797291	13.925	0.14382	13.914	13.842	13.986	-0.010673	1221	28	0.885486	0.01655817	0.88396657	359.2196	0	6.7172546						90	7	2	NaN	NaN	NaN	0.089764	1	11454	11454		37.302	9.5135	1	7569			27176	4743	15645	16096	21670	21670					0.05911369802970512
TTPIFANRR	9	Unmodified						0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.30399	1074.59343	2.2821	0.0012285	-1.4898	-0.00080199	0.79225	0.00042647	538.3034110182341	13.829	0.12005	13.829	13.805	13.925	0	1218	34	0.8873258	0.020237803	0.8873258	359.96594		8.209961	-0.042677	0.00071268	0.0016796	NaN	37.302	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7192.7			27177	4743	15645	16096							0.05911369802970512
TTQGLDGLSER	11	Unmodified	_TTQGLDGLSER_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.79639152665	2	588.796392	1175.57823	1.786	0.0010516	1.8976	0.0011173	3.6836	0.0021689	588.7983314376218	16.542	0.11991	16.542	16.518	16.638	0	1224	70	0.883646	0.042292476	0.883646	358.08313	0	17.138336						135	6	2	NaN	NaN	NaN	0.59348	1	15662	15662		14.45	5.4876	1	14614			27178	3699	15646	16097	21671	21671					-0.0025358657551350916
TTQGLDGLSER	11	Unmodified	_TTQGLDGLSER_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.79639152665	2	588.796392	1175.57823	1.6043	0.0009446	5.2215	0.0030744	6.8258	0.004019	588.7999677543096	16.611	0.071934	16.598	16.526	16.598	-0.012993	1185	70	0.90755045	0.042287946	0.906031	367.77	0	17.136475						156	4	2	NaN	NaN	NaN	0.10804	1	15095	15095		38.881	20.648	1	19771			27179	3699	15646	16097	21672	21672					-0.0025358657551350916
TTRLCHLI	8	Unmodified	_TTRLCHLI_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.7709369386001	2	478.770937	955.527321	1.0958	0.00052463	8.7985	0.0042125	9.8943	0.0047371	478.7756192725576	35.818	0.12049	35.819	35.77	35.891	0.00052643	1344	34	0.8098828	0.020327687	0.8083634	329.06683	0	8.25943						107	6	2	NaN	NaN	NaN	0.57691	1	7094	7094		26.732	0	1	10171	+		27180	8676	15647	16098	21673	21673					0.0477783763659545
TTRSGAIF	8	Unmodified	_TTRSGAIF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4573929471001	1	852.457393	851.450116	0.7814	0.00066611	-3.2442	-0.0027655	-2.4628	-0.0020994	852.4550431954847	32.248	0.096561	32.244	32.22	32.316	-0.0037613	402	58	1.3804773	0.033943772	1.3789579	280.94467	0	6.9079895						106	5	2	NaN	NaN	NaN	0.80692	1	5275	5275		8.2903	0	1	7988.6			27181	2061	15648	16099	21674	21674					0.01844942691900542
TTRTETSETEI	11	Unmodified	_TTRTETSETEI_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3042463485	2	634.304246	1266.59394	1.9934	0.0012644	-2.0785	-0.0013184	-0.085057	-5.3952E-05	634.3033419246544	23.32	0.048231	23.307	23.283	23.331	-0.013296	972	82	1.0375156	0.049210787	1.0359962	420.08572	0	19.925293						100	3	2	NaN	NaN	NaN	0.78138	1	17338	17338		0	0	1	9572.6			27182	4801	15649	16100	21675	21675					-0.028693448491367235
TTSAYAGG	8	Unmodified	_TTSAYAGG_					0	0	0		FAM71B|p.S228T|1|0.3|ENSG00000170613|chr5:157163583-157163583|A/T|missense_variant	FAM71B|p.S228T|1|0.3|ENSG00000170613|chr5:157163583-157163583|A/T|missense_variant	FAM71B|p.S228T|1|0.3|ENSG00000170613|chr5:157163583-157163583|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3257100721	1	727.32571	726.318434	0.11162	8.1182E-05	-1.7443	-0.0012687	-1.6327	-0.0011875	727.3258463763908	55.891	0.072014	55.89	55.866	55.938	-0.00059128	567	46	1.2819146	0.026964068	1.2803952	261.59894	0	5.5025024						61	4	2	NaN	NaN	NaN	0.84692	1	3620	3620		1.4396	0	1	4046.4			27183	7798	15650	16101	21676	21676					-0.05567287395854237
TTSDIDYAL	9	Unmodified	_TTSDIDYAL_					0	0	0		ENST00000487288.1_1_7:99711182-99711832:-|nuORF;nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4676828619	1	998.467683	997.460406	1.9268	0.0019239	0.55128	0.00055043	2.4781	0.0024743	998.4675599854769	23.803	0.1445	23.803	23.778	23.923	0	258	52	1.4660252	0.030219316	1.4660252	297.65988	0	6.135681						153	7	3	NaN	NaN	NaN	0.23112	1	8469	8469		23.334	4.2161	1	15050			27184	1594	15651	16102	21677	21677					-0.038425391641794704
TTSDIDYAL	9	Unmodified	_TTSDIDYAL_					0	0	0		ENST00000487288.1_1_7:99711182-99711832:-|nuORF;nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	ENST00000487288.1_1_7:99711182-99711832:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4676828619	1	998.467683	997.460406	1.8801	0.0018772	-0.13907	-0.00013885	1.741	0.0017384	998.4682742079543	23.802	0.072338	23.789	23.765	23.837	-0.013048	255	52	1.4678029	0.030216217	1.4662834	298.0208	0	6.135071						110	4	2	NaN	NaN	NaN	0.10956	1	8292	8292		34.439	11.104	1	13272			27185	1594	15651	16102	21678	21678					-0.038425391641794704
TTSGAAGS	8	Unmodified	_TTSGAAGS_					0	0	0			REV__ENSG00000168505|ENST00000306318|GBX2	REV__ENSG00000168505|ENST00000306318|GBX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.2944099437001	1	651.29441	650.287133	1.2506	0.0008145	1.8212	0.0011861	3.0718	0.0020006	651.2959775371345	29.208	0.12067	29.208	29.16	29.28	0	717	55	1.1918083	0.032525063	1.1918083	243.73698	0	6.651703						174	6	3	NaN	NaN	NaN	0.84727	1	2051	2051		1.2418	0	1	13371	+		27186	10515	15652	16103	21679	21679					-0.05199860429934233
TTSGGGSA	8	Unmodified	_TTSGGGSA_					0	0	0			REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	REV__ENST00000503900.1_1_5:75207117-75207609:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.2787598795	1	637.27876	636.271483	1.9014	0.0012117	-11.092	-0.007069	-9.1911	-0.0058573	637.2716592777316	29.908	0.14477	29.908	29.884	30.029	0	828	52	1.1248186	0.030831933	1.1248186	230.14125	0	6.308304						106	7	2	NaN	NaN	NaN	0.84945	1	1634	1634		0	0	1	7296.4	+		27187	12530	15653	16104	21680	21680					-0.061201469470006487
TTSGGSGG	8	Unmodified	_TTSGGSGG_					0	0	0			REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF	REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.2631098153001	1	623.26311	622.255833	-0.16019	-9.9843E-05	7.3467	0.0045789	7.1865	0.0044791	623.2690611556661	51.252	0.047894	51.252	51.252	51.3	0.00017166	651	43	1.2315145	0.025243282	1.229995	252.0907	0	5.167282						59	3	2	NaN	NaN	NaN	0.84945	1	1109	1109		0	0	1	3308.2	+		27188	11779	15654	16105	21681	21681					-0.07040433464032958
TTSSSGGL	8	Unmodified	_TTSSSGGL_					0	0	0		ENST00000371754.8_2_20:47887903-47888089:-|nuORF	ENST00000371754.8_2_20:47887903-47888089:-|nuORF	ENST00000371754.8_2_20:47887903-47888089:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.3362747584002	1	709.336275	708.328998	1.6861	0.001196	6.8133	0.0048329	8.4994	0.0060289	709.341186643089	23.85	0.096369	23.837	23.813	23.91	-0.013048	651	40	1.2315145	0.023441434	1.229995	251.43198	0	4.785904						76	5	2	NaN	NaN	NaN	0.84887	1	3321	3321		0.32989	0	1	5256.4			27189	6660	15655	16106	21682	21682					-0.036833047414006614
TTTGAGGG	8	Unmodified	_TTTGAGGG_					0	0	0			REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.2838452574001	1	621.283845	620.276569	0.98448	0.00061164	8.5985	0.0053421	9.5829	0.0059537	621.2887770640438	21.464	0.096388	21.45	21.402	21.499	-0.014006	780	82	1.1538198	0.048910618	1.1523004	236.20279	0	10.01268						181	5	3	NaN	NaN	NaN	0.84651	1	1085	1085		1.6704	0.2308	1	29756	+		27190	9237	15656	16107	21683	21683					-0.0487584308436908
TTTGAGGG	8	Unmodified						0	0	0			REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	REV__RIMS3|p.A42T|1|0.21|ENSG00000117016|chr1:40641802-40641802|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	621.283845	620.276569	0.98448	0.00061164	8.5985	0.0053421	9.5829	0.0059537	621.2887770640438	21.464	0.096388	21.45	21.402	21.499	-0.014006	780	82	1.1538198	0.048910618	1.1523004	236.20279		10.01268	-0.0069912	0.00029045	0.00014584	NaN	1.6704	181	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29756	+		27191	9237	15656	16107							-0.0487584308436908
TTTMSSKRTK	10	Unmodified	_TTTMSSKRTK_					0	0	0		ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF	ENST00000577510.5_1_18:3252320-3253446:+|nuORF	ENST00000577510.5_1_18:3252320-3253446:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8057050027	2	570.805705	1139.59686	1.7519	0.001	-2.384	-0.0013608	-0.63203	-0.00036077	570.8045497801331	30.318	0.16892	30.318	30.27	30.439	0	1047	112	0.99186665	0.06761885	0.99186665	402.08493	0	27.411469						370	8	3	NaN	NaN	NaN	0.78213	1	14437	14437		0	0	1	39622			27192	7665	15657	16108	21684	21684					0.03264251794689699
TTTSGGLI	8	Unmodified	_TTTSGGLI_					0	0	0		nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8	nc|ENSG00000132964|P49336-2|CDK8	nc|ENSG00000132964|P49336-2|CDK8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.4039603931002	1	749.40396	748.396684	1.6171	0.0012118	4.4938	0.0033676	6.1108	0.0045795	749.4069857497252	55.989	0.071861	55.989	55.965	56.037	0	606	55	1.2585332	0.032396555	1.2585332	256.68716	0	6.6075287						114	4	3	NaN	NaN	NaN	0.84887	1	4030	4030		0.32989	0	1	15114			27193	2802	15658	16109	21685	21685					0.012421451893942503
TTTWRDYSL	9	Unmodified	_TTTWRDYSL_					0	0	0			REV__ENST00000393792.2_1_5:171661268-171661319:-|nuORF	REV__ENST00000393792.2_1_5:171661268-171661319:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.777470492	2	571.77747	1141.54039	0.83567	0.00047782	-2.6211	-0.0014987	-1.7854	-0.0010209	572.2771271511585	30.679	0.14474	30.673	30.625	30.77	-0.0057545	1311	43	0.83019954	0.02584505	0.8286801	336.54114	0	10.476898						176	7	3	NaN	NaN	NaN	0.59509	1	14036	14036		5.6942	0.50528	1	13600	+		27194	11991	15659	16110	21686	21686					-0.024720527703493644
TTVDESQVVTR	11	Unmodified	_TTVDESQVVTR_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.817323934	2	617.817324	1233.62009	1.0634	0.00065697	-2.7746	-0.0017142	-1.7112	-0.0010572	617.815397211752	15.053	0.048029	15.053	15.053	15.101	0	1197	46	0.9001988	0.02757907	0.9001988	364.59177	0	11.169861						66	3	2	NaN	NaN	NaN	0.29813	1	17367	17367		25.694	11.746	1	6462.6			27195	4823	15660	16111	21687	21687					0.012629691129859566
TTVDESQVVTR	11	Unmodified	_TTVDESQVVTR_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.817323934	2	617.817324	1233.62009	0.97766	0.00060402	-1.8483	-0.0011419	-0.87066	-0.00053791	617.8163789295126	15.052	0.048038	15.04	15.04	15.088	-0.011738	1200	40	0.89836043	0.023899257	0.896841	363.84717	0	9.679504						67	3	3	NaN	NaN	NaN	0.3939	1	16642	16642		22.269	12.698	1	6619.7			27196	4823	15660	16111	21688	21688					0.012629691129859566
TTVEGLITR	9	Unmodified	_TTVEGLITR_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	495.28493138335	2	495.284931	988.55531	1.7126	0.00084825	-1.0125	-0.0005015	0.7001	0.00034675	495.28358604989324	19.324	0.144	19.324	19.3	19.444	0	1308	46	0.83204526	0.027683675	0.83204526	337.91156	0	11.24292						169	7	3	NaN	NaN	NaN	0.21462	1	8172	8172		24.393	5.057	1	28040			27197	1740	15661	16112	21689	21689					0.06057439097662609
TTVEGLITR	9	Unmodified	_TTVEGLITR_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	495.28493138335	2	495.284931	988.55531	1.1037	0.00054663	-0.4062	-0.00020119	0.69747	0.00034544	495.28434840003086	19.346	0.14418	19.332	19.308	19.452	-0.014141	1305	43	0.83389086	0.025836706	0.8323714	338.6611	0	10.492828						141	7	3	NaN	NaN	NaN	0.27507	1	8003	8003		20.513	1.395	1	26131			27198	1740	15661	16112	21690	21690					0.06057439097662609
TTVESSFVRR	10	Unmodified	_TTVESSFVRR_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000460658.5_1_22:31492537-31495228:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.31729414425	2	591.317294	1180.62004	1.4358	0.000849	-2.8873	-0.0017073	-1.4515	-0.00085832	591.315691757181	14.381	0.1199	14.381	14.381	14.501	0	1182	31	0.9093879	0.018373132	0.9093879	368.49637	0	7.445038						62	6	2	NaN	NaN	NaN	0.68732	1	15849	15849		8.9191	2.4892	1	4623			27199	5336	15662	16113	21691	21691					0.03695013903643485
TTVESSFVRR	10	Unmodified						0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814-2|SMTN;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000460658.5_1_22:31492537-31495228:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	591.317294	1180.62004	1.6329	0.00096556	3.6811	0.0021767	5.314	0.0031423	591.3209834459904	14.428	0.047899	14.417	14.393	14.441	-0.011219	1179	28	0.9112251	0.016534925	0.90970564	369.24078		6.700165	0.017848	0.004723	0.00015889	NaN	8.9191	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3365.2			27200	5336	15662	16113							0.03695013903643485
TTVIYGYS	8	Unmodified	_TTVIYGYS_					0	0	0			REV__ENSG00000225781|ENST00000418316|OR6V1	REV__ENSG00000225781|ENST00000418316|OR6V1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.2265508372	2	452.226551	902.438549	0.85918	0.00038855	3.6443	0.0016481	4.5035	0.0020366	452.22904743291747	35.529	0.21709	35.529	35.481	35.698	0.00053024	1434	85	0.75435036	0.0518865	0.7528309	306.75882	0	21.099792						738	10	6	NaN	NaN	NaN	0.82332	1	5994	5994		6.0903	0	1	299850	+		27201	11312	15663	16114	21692	21692					-0.01657299122086897
TTVSSGGG	8	Unmodified	_TTVSSGGG_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.1586682372501	2	333.158668	664.302784	1.3729	0.0004574	0.99339	0.00033096	2.3663	0.00078836	333.15897635525613	32.732	0.12063	32.732	32.707	32.828	0	1485	46	0.72280174	0.027861238	0.72280174	295.5032	0	11.390503						86	6	2	NaN	NaN	NaN	0.84945	1	2429	2429		0	0	1	7519.2	+		27202	9375	15664	16115	21693	21693					-0.042795739128791865
TTVSSGGG	8	Unmodified	_TTVSSGGG_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	333.1586682372501	2	333.158668	664.302784	1.4316	0.00047694	5.6261	0.0018744	7.0576	0.0023513	333.1602303899816	28.218	0.12071	28.209	28.185	28.305	-0.0089779	1497	46	0.71537006	0.027879357	0.7138506	292.46487	0	11.397919						141	6	3	NaN	NaN	NaN	0.84945	1	2341	2341		0	0	1	15075	+		27203	9375	15664	16115	21694	21694					-0.042795739128791865
TVAATGVW	8	Unmodified	_TVAATGVW_					0	0	0		ENST00000477275.1_1_10:133959024-133981894:+|nuORF	ENST00000477275.1_1_10:133959024-133981894:+|nuORF	ENST00000477275.1_1_10:133959024-133981894:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	804.4250301862	1	804.42503	803.417754	1.9953	0.0016051	-6.0089	-0.0048337	-4.0136	-0.0032286	804.4201408792143	55.196	0.14425	55.196	55.172	55.316	0	462	58	1.3447032	0.0340271	1.3447032	273.92404	0	6.9315186						162	7	2	NaN	NaN	NaN	0.8439	1	4786	4786		3.1533	0	1	15859			27204	7181	15665	16116	21695	21695					0.008181552889027444
TVAAVFRGR	9	Unmodified	_TVAAVFRGR_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.7879755988001	2	488.787976	975.561398	1.434	0.00070094	-1.4855	-0.00072607	-0.051422	-2.5134E-05	488.7868389253411	14.549	0.095956	14.549	14.525	14.621	0	1272	34	0.854179	0.020274997	0.854179	346.96396	0	8.235626						96	5	3	NaN	NaN	NaN	0.062072	1	7773	7773		41.785	21.336	1	8523.1			27205	5542;1496	15666	16117	21696	21696					0.0726400211985947
TVAAVFRGR	9	Unmodified						0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	488.787976	975.561398	1.3308	0.00065047	-2.0097	-0.00098232	-0.67892	-0.00033185	488.78656620968246	14.668	0.11975	14.656	14.584	14.704	-0.011738	1272	34	0.854179	0.020274997	0.8526596	346.96396		8.235626	0.053439	-0.00027952	-0.00075972	NaN	41.785	68	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5861.1			27206	5542;1496	15666	16117							0.0726400211985947
TVAAVLMVA	9	Unmodified	_TVAAVLMVA_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.75696389610005	2	437.756964	873.499375	2.0357	0.00089113	5.9894	0.0026219	8.025	0.003513	437.7596293334972	25.708	0.16888	25.708	25.684	25.853	0	1380	112	0.7876915	0.06843442	0.7876915	320.47607	0	27.842865						376	8	4	NaN	NaN	NaN	0.11467	1	5724	5724		33.698	0	1	324280			27207	965	15667	16118	21697	21697					0.057565146565025316
TVACIAGG	8	Unmodified	_TVACIAGG_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3443370242002	1	691.344337	690.337061	1.0021	0.00069279	4.8091	0.0033247	5.8112	0.0040175	691.3472726961406	27.494	0.16893	27.484	27.364	27.533	-0.009552	726	76	1.1863867	0.045210004	1.1848673	242.33818	0	9.234863						187	8	2	NaN	NaN	NaN	0.8439	1	2973	2973		3.1533	0	1	14953	+		27208	10854	15668	16119	21698	21698					-0.020494490256396602
TVAFLDWAL	9	Unmodified	_TVAFLDWAL_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.5509589812998	1	1035.55096	1034.54368	1.6442	0.0017026	-0.89206	-0.00092377	0.75213	0.00077887	1036.553005682474	37.022	0.096119	37.024	36.976	37.072	0.0022507	156	49	1.5263584	0.028331876	1.5248389	309.75836	0	5.7496643						62	5	2	NaN	NaN	NaN	0.18779	1	9770	9770		26.115	14.066	1	3711.3			27209	2234	15669	16120	21699	21699					0.027792420743026014
TVAGTSSG	8	Unmodified	_TVAGTSSG_					0	0	0			REV__nc|ENSG00000211649|A0A075B6I9|IGLV7-46	REV__nc|ENSG00000211649|A0A075B6I9|IGLV7-46	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3257100721002	1	679.32571	678.318434	1.4939	0.0010148	6.1354	0.0041679	7.6293	0.0051828	679.3291535071332	22.741	0.16867	22.728	22.68	22.848	-0.01354	714	46	1.1936152	0.027105689	1.1920958	243.8987	0	5.538666						112	8	2	NaN	NaN	NaN	0.8439	1	2716	2716		3.1533	0	1	6833.8	+		27210	13224	15670	16121	21700	21700					-0.033592873958355085
TVASTPAPVT	10	Unmodified	_TVASTPAPVT_					0	0	0		ENST00000537320.5_1_9:117848205-117848316:-|nuORF	ENST00000537320.5_1_9:117848205-117848316:-|nuORF	ENST00000537320.5_1_9:117848205-117848316:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.25838228184995	2	472.258382	942.502212	0.69766	0.00032947	-2.0176	-0.00095281	-1.3199	-0.00062333	472.2573107394216	23.73	0.072227	23.717	23.693	23.765	-0.013048	1290	46	0.84311575	0.027671635	0.8415963	342.63702	0	11.245575						108	4	3	NaN	NaN	NaN	0.76548	1	6742	6742		3.5698	0	1	12696			27211	7476	15671	16122	21701	21701					0.028660613149895653
TVDEDSPVL	9	Unmodified	_TVDEDSPVL_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9;ENST00000557141.1_1_14:68265771-68265831:+|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.4676828619	1	974.467683	973.460406	1.8965	0.0018481	-0.14743	-0.00014366	1.7491	0.0017044	974.4666527695396	21.657	0.16866	21.657	21.585	21.754	0	321	70	1.4286518	0.040972114	1.4286518	290.16907	0	8.321686						220	8	3	NaN	NaN	NaN	0.025843	1	7696	7696		64.55	20.248	1	18867			27212	5960	15672	16123	21702	21702					-0.02738539164181475
TVDEDSPVL	9	Unmodified	_TVDEDSPVL_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9;ENST00000557141.1_1_14:68265771-68265831:+|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.4676828619	1	974.467683	973.460406	1.6339	0.0015922	0.90045	0.00087746	2.5343	0.0024696	974.4677855957493	21.657	0.12024	21.643	21.595	21.715	-0.013897	321	67	1.4286518	0.039188623	1.4271324	290.16907	0	7.9594727						172	6	2	NaN	NaN	NaN	0.018156	1	7547	7547		74.332	30.03	1	18982			27213	5960	15672	16123	21703	21703					-0.02738539164181475
TVDPLDWLF	9	Unmodified	_TVDPLDWLF_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.5564382896998	1	1105.55644	1104.54916	1.1068	0.0012236	-0.036679	-4.0551E-05	1.0701	0.0011831	1105.555252862555	41.618	0.12024	41.618	41.546	41.666	0	84	52	1.5688156	0.030034065	1.5688156	318.109	0	6.090027						122	6	2	NaN	NaN	NaN	0.055351	1	13038	13038		44.638	17.592	1	9154.3			27214	4411	15673	16124	21704	21704					0.0010692086611925333
TVDPLDWLF	9	Unmodified	_TVDPLDWLF_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5564382896998	1	1105.55644	1104.54916	1.047	0.0011575	2.0341	0.0022488	3.0811	0.0034063	1105.5589778980598	41.568	0.12017	41.577	41.505	41.625	0.0082588	81	52	1.5705823	0.030027747	1.5690628	318.46722	0	6.088745						112	6	2	NaN	NaN	NaN	0.04947	1	12696	12696		47.136	10.549	1	8514.3			27215	4411	15673	16124	21705	21705					0.0010692086611925333
TVDSHEPRL	9	Unmodified	_TVDSHEPRL_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	351.8489672458	3	351.848967	1052.52507	2.3099	0.00081273	-2.3031	-0.00081034	0.0067778	2.3848E-06	351.84824217377627	13.685	0.16817	13.685	13.661	13.829	0	1512	46	0.7060759	0.027888477	0.7060759	429.76477	0	16.974762						166	8	3	NaN	NaN	NaN	0.060816	1	10740	10740		31.198	10.749	1	18552			27216	5941	15674	16125	21706	21706					0.0009108043248033937
TVDSHEPRL	9	Unmodified	_TVDSHEPRL_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2698126354001	2	527.269813	1052.52507	2.2122	0.0011664	-1.7481	-0.00092173	0.46413	0.00024472	527.2690325309225	13.709	0.19224	13.709	13.661	13.853	0	1221	91	0.885486	0.055238724	0.885486	359.31488	0	22.414917						287	9	3	NaN	NaN	NaN	0.03533	1	10741	10741		53.14	23.542	1	33480			27217	5941	15674	16125	21707	21707					0.0009108043248033937
TVDSHEPRL	9	Unmodified	_TVDSHEPRL_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2698126354001	2	527.269813	1052.52507	1.0661	0.00056214	0.38862	0.00020491	1.4548	0.00076705	527.2702818410629	13.733	0.11985	13.723	13.675	13.794	-0.010672	1218	97	0.8873258	0.058934033	0.8858064	360.06143	0	23.914398						227	6	3	NaN	NaN	NaN	0.028569	1	10516	10516		60.984	37.866	1	25294			27218	5941	15674	16125	21708	21708					0.0009108043248033937
TVEAFDPVL	9	Unmodified	_TVEAFDPVL_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.514239124	1	990.514239	989.506963	1.4044	0.0013911	-0.69588	-0.00068928	0.7085	0.00070178	990.512441316456	28.821	0.12065	28.813	28.716	28.837	-0.0083504	252	91	1.4695803	0.053308606	1.4680609	298.41437	0	10.82489						300	6	3	NaN	NaN	NaN	0.055351	1	8025	8025		44.638	15.04	1	40770			27219	3510	15675	16126	21709	21709					0.011789454577638026
TVEGDLSLL	9	Unmodified	_TVEGDLSLL_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.5091537461002	1	946.509154	945.501877	1.7837	0.0016883	-0.57499	-0.00054423	1.2088	0.0011441	946.5081541172573	24.864	0.1448	24.864	24.816	24.96	0	318	121	1.4304334	0.0712595	1.4304334	290.65082	0	14.479279						409	7	4	NaN	NaN	NaN	0.043119	1	6966	6966		49.833	0	1	109410			27220	4023	15676	16127	21710	21710					0.026946415951556446
TVEGGDTAL	9	Unmodified	_TVEGGDTAL_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	862.4152533609	1	862.415253	861.407977	1.8615	0.0016053	-0.94954	-0.00081889	0.91192	0.00078645	862.414221599622	17.33	0.096003	17.316	17.268	17.364	-0.013567	462	40	1.3447032	0.023276687	1.3431838	273.61392	0	4.736267						87	5	2	NaN	NaN	NaN	0.20577	1	5413	5413		24.961	0	1	7161.8			27221	997	15677	16128	21711	21711					-0.028270775071405296
TVEHHSQSGF	10	Unmodified	_TVEHHSQSGF_					0	0	0			REV__ENSG00000181523|ENST00000326317|SGSH	REV__ENSG00000181523|ENST00000326317|SGSH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7570694009001	2	564.757069	1127.49959	1.2733	0.00071912	0.14358	8.1086E-05	1.4169	0.00080021	564.7576223363242	36.806	0.09631	36.807	36.783	36.88	0.0016785	1233	40	0.87812483	0.023930311	0.8766054	356.0217	0	9.702179						108	5	3	NaN	NaN	NaN	0.74854	1	13544	13544		4.7291	0.31598	1	9489.1	+		27222	10845	15678	16129	21712	21712					-0.059063940899250156
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.9225779902333	3	425.922578	1274.7459	1.6198	0.00068991	-1.0942	-0.00046606	0.52555	0.00022385	425.92225909389595	19.108	0.16796	19.108	19.084	19.252	0	1452	40	0.74322224	0.024120152	0.74322224	451.35635	0	14.648102						211	8	4	NaN	NaN	NaN	0.2088	1	18323	18323		29.509	16.408	1	55140			27223	1743;5882;540	15679	16130	21713	21713					0.11952145479745013
TVFDQPQE	8	Unmodified	_TVFDQPQE_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;nc|ENSG00000103423|Q96EY1-3|DNAJA3;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	963.4418024624	1	963.441802	962.434526	2.4414	0.0023522	-1.4609	-0.0014075	0.98053	0.00094468	963.4403688425225	26.07	0.31376	26.07	26.022	26.336	0	333	193	1.4215236	0.11425841	1.4215236	288.76746	0	23.210358						893	14	5	NaN	NaN	NaN	0.10172	1	7393	7393		63.958	8.4646	1	321970			27224	7663	15680	16131	21714	21714					-0.048193886158060195
TVFDQPQE	8	Unmodified	_TVFDQPQE_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF;DNAJA3|p.F201L|1|0.26|ENSG00000103423|chr16:4441548-4441548|C/G|missense_variant;nc|ENSG00000103423|Q96EY1-3|DNAJA3;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	963.4418024624	1	963.441802	962.434526	2.5183	0.0024262	-1.3418	-0.0012927	1.1765	0.0011335	963.4402452276946	26.07	0.33786	26.059	25.962	26.3	-0.011137	333	139	1.4215236	0.082053185	1.4200041	288.76746	0	16.668243						964	15	5	NaN	NaN	NaN	0.13059	1	7236	7236		58.235	2.7418	1	341590			27225	7663	15680	16131	21715	21715					-0.048193886158060195
TVFESRNLR	9	Unmodified	_TVFESRNLR_					0	0	0		ENST00000485191.5_1_19:1277107-1277296:+|nuORF;ENSG00000228300|ENST00000409293|FAM174C	ENST00000485191.5_1_19:1277107-1277296:+|nuORF	ENST00000485191.5_1_19:1277107-1277296:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.30672945795	2	561.306729	1120.59891	1.5202	0.00085328	-2.2489	-0.0012623	-0.7287	-0.00040902	561.3053100529448	14.405	0.095875	14.405	14.381	14.477	0	1194	34	0.902037	0.020218074	0.902037	365.7437	0	8.197723						89	5	2	NaN	NaN	NaN	0.15381	1	13712	13712		25.801	0	1	11165			27226	6030	15681	16132	21716	21716					0.04343048594796528
TVFPYEPFL	9	Unmodified	_TVFPYEPFL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.5662746945	1	1112.56627	1111.559	1.7939	0.0019958	0.55731	0.00062004	2.3512	0.0026158	1112.5666949443212	34.179	0.24116	34.179	34.131	34.372	0	69	118	1.5776473	0.06893098	1.5776473	319.8749	0	13.976074						588	11	4	NaN	NaN	NaN	0.0023856	1	13342	13342		109.86	47.881	1	154400			27227	384	15682	16133	21717	21717					0.007681088715116857
TVFPYEPFL	9	Unmodified	_TVFPYEPFL_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.5662746945	1	1112.56627	1111.559	1.2017	0.001337	1.1463	0.0012753	2.348	0.0026123	1112.5673363303974	34.178	0.26525	34.177	34.129	34.394	-0.0012474	66	112	1.579413	0.06537533	1.5778936	320.2329	0	13.255127						639	12	5	NaN	NaN	NaN	0.00020136	1	12967	12967		116.74	75.779	1	146060			27228	384	15682	16133	21718	21718					0.007681088715116857
TVFSCLAKAMA	11	Unmodified	_TVFSCLAKAMA_					0	0	0			REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2908448907001	2	571.290845	1140.56714	1.5592	0.00089077	-6.6411	-0.003794	-5.0819	-0.0029032	571.2879722489731	25.419	0.072388	25.407	25.382	25.455	-0.012011	1215	67	0.8891654	0.04046464	0.88764596	360.44806	0	16.403473						132	4	4	NaN	NaN	NaN	0.64343	1	14001	14001		11.17	1.4243	1	30253	+		27229	9641	15683	16134	21719	21719					0.002475965249914225
TVFYVLDE	8	Unmodified	_TVFYVLDE_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.2474832445499	2	493.247483	984.480414	0.19001	9.3721E-05	-3.4478	-0.0017006	-3.2578	-0.0016069	493.24569668908447	31.838	0.048271	31.833	31.809	31.857	-0.0044155	1296	133	0.8394264	0.08114833	0.83790696	340.92856	0	32.957977						152	3	3	NaN	NaN	NaN	0.82797	1	7851	7851		5.4659	0	1	14087	+		27230	10016	15684	16135	21720	21720					-0.012447434335854268
TVGCGPIS	8	Unmodified	_TVGCGPIS_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3549017105	1	733.354902	732.347625	1.1546	0.00084671	1.439	0.0010553	2.5936	0.001902	733.3560355365287	31.186	0.26543	31.181	31.133	31.398	-0.0050716	609	109	1.2567334	0.06484866	1.255214	256.42114	0	13.231567						407	12	3	NaN	NaN	NaN	0.80692	1	3709	3709		8.2903	0	1	61725	+		27231	11164	15685	16136	21721	21721					-0.02925466371220864
TVGGLFFI	8	Unmodified	_TVGGLFFI_					0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4818167836	1	853.481817	852.47454	1.6001	0.0013656	-1.2867	-0.0010982	0.31335	0.00026744	853.4805425294496	36.615	0.096378	36.615	36.591	36.688	0	405	52	1.3786905	0.030377269	1.3786905	280.57565	0	6.1820374						122	5	2	NaN	NaN	NaN	0.15767	1	5423	5423		53.324	0	1	13199	+		27232	9775	15686	16137	21722	21722					0.04240202845414842
TVGGLFFI	8	Unmodified						0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	853.481817	852.47454	1.6001	0.0013656	-1.2867	-0.0010982	0.31335	0.00026744	853.4805425294496	36.615	0.096378	36.615	36.591	36.688	0	405	52	1.3786905	0.030377269	1.3786905	280.57565		6.1820374	0.00016104	-0.00079063	-0.00013373	NaN	53.324	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13199	+		27233	9775	15686	16137							0.04240202845414842
TVGGLFFI	8	Unmodified						0	0	0			REV__ENSG00000139719|ENST00000267199|VPS33A	REV__ENSG00000139719|ENST00000267199|VPS33A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	853.481817	852.47454	1.2245	0.0010451	0.27683	0.00023627	1.5013	0.0012814	853.4815181639148	36.613	0.09621	36.615	36.591	36.687	0.0016785	402	49	1.3804773	0.028588891	1.3789579	280.9393		5.8180847	-0.00016104	0.00054382	0.00013373	NaN	53.324	124	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12057	+		27234	9775	15686	16137							0.04240202845414842
TVGGPLLL	8	Unmodified	_TVGGPLLL_					0	0	0		ENST00000494781.5_1_6:167412945-167425107:+|nuORF;ENST00000609590.1_1_6:167417751-167458021:+|nuORF;nc|ENSG00000272980|O95684-2|CEP43;ENSG00000213066|ENST00000366847|CEP43	ENST00000494781.5_1_6:167412945-167425107:+|nuORF	ENST00000494781.5_1_6:167412945-167425107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.4818167836	1	769.481817	768.47454	1.7611	0.0013551	3.8942	0.0029965	5.6553	0.0043516	769.4840526946078	58.605	0.047962	58.605	58.581	58.629	0	396	61	1.3840506	0.035720825	1.3840506	282.15463	0	7.2821045						76	3	2	NaN	NaN	NaN	0.84692	1	4343	4343		1.4396	1.0439	1	8395.4			27235	5950	15687	16138	21723	21723					0.0810420284542488
TVGSGAVL	8	Unmodified	_TVGSGAVL_					0	0	0		ENST00000593119.5_1_19:5714280-5720171:-|nuORF	ENST00000593119.5_1_19:5714280-5720171:-|nuORF	ENST00000593119.5_1_19:5714280-5720171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3984810847002	1	703.398481	702.391205	0.86067	0.00060539	6.37	0.0044806	7.2306	0.005086	703.4026582976422	34.782	0.14476	34.782	34.734	34.879	0	606	61	1.2585332	0.036000013	1.2585332	256.98947	0	7.35112						169	7	2	NaN	NaN	NaN	0.8439	1	3259	3259		3.1533	0	1	21332			27236	7742	15688	16139	21724	21724					0.02810466397579603
TVGSGAVL	8	Unmodified	_TVGSGAVL_					0	0	0		ENST00000593119.5_1_19:5714280-5720171:-|nuORF	ENST00000593119.5_1_19:5714280-5720171:-|nuORF	ENST00000593119.5_1_19:5714280-5720171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3984810847002	1	703.398481	702.391205	0.90269	0.00063495	5.9328	0.0041731	6.8354	0.004808	703.4020864473321	34.781	0.16864	34.78	34.708	34.877	-0.0006485	603	55	1.2603331	0.032393098	1.2588136	257.35696	0	6.614609						192	8	3	NaN	NaN	NaN	0.82797	1	3203	3203		5.4659	0	1	20437			27237	7742	15688	16139	21725	21725					0.02810466397579603
TVGSSVQK	8	Unmodified	_TVGSSVQK_					0	0	0			REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.22434249925004	2	403.224342	804.434132	0.6886	0.00027766	-10.264	-0.0041386	-9.5752	-0.003861	403.22052719173035	53.713	0.5859	53.712	53.623	54.209	-0.00059128	1437	154	0.7524962	0.09449226	0.75097674	306.56296	0	38.495636						1800	24	6	NaN	NaN	NaN	0.84512	1	4706	4706		2.4615	0.79115	1	3238100	+		27238	12052	15689	16140	21726	21726					0.02409236455014252
TVGTTGSA	8	Unmodified	_TVGTTGSA_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3413601363001	1	693.34136	692.334084	1.4641	0.0010151	6.0717	0.0042097	7.5357	0.0052248	693.3454221360325	28.846	0.19306	28.846	28.798	28.991	0	672	70	1.2188909	0.041499734	1.2188909	248.96371	0	8.476517						250	9	3	NaN	NaN	NaN	0.83211	1	3084	3084		4.9097	0	1	36767	+		27239	11266	15690	16141	21727	21727					-0.02439000878803199
TVGTTGSA	8	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.34136	692.334084	1.4641	0.0010151	6.0717	0.0042097	7.5357	0.0052248	693.3454221360325	28.846	0.19306	28.846	28.798	28.991	0	672	70	1.2188909	0.041499734	1.2188909	248.96371		8.476517	0.0045585	4.0878E-05	-0.00014226	NaN	4.9097	250	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36767	+		27240	11266	15690	16141							-0.02439000878803199
TVGTTGSA	8	Unmodified						0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	693.34136	692.334084	0.92659	0.00064244	5.917	0.0041025	6.8436	0.0047449	693.3454615968338	28.845	0.19308	28.837	28.789	28.982	-0.0083504	669	97	1.2206948	0.0577482	1.2191753	249.33217		11.795319	-0.0045585	-6.6372E-05	0.00014226	NaN	4.9097	293	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40079	+		27241	11266	15690	16141							-0.02439000878803199
TVGVDFAL	8	Unmodified	_TVGVDFAL_					0	0	0		ENSG00000117280|ENST00000367139|RAB29	ENSG00000117280|ENST00000367139|RAB29	ENSG00000117280|ENST00000367139|RAB29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4403458994001	1	821.440346	820.433069	1.2502	0.001027	0.20838	0.00017118	1.4586	0.0011981	821.4403922157746	28.894	0.12069	28.885	28.837	28.958	-0.0083485	462	49	1.3447032	0.028649807	1.3431838	273.82852	0	5.8341064						140	6	3	NaN	NaN	NaN	0.49126	1	4917	4917		31.561	0	1	15107			27242	2136	15691	16142	21728	21728					0.01567022086101133
TVGVDFAL	8	Unmodified						0	0	0		ENSG00000117280|ENST00000367139|RAB29	ENSG00000117280|ENST00000367139|RAB29	ENSG00000117280|ENST00000367139|RAB29	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	821.440346	820.433069	1.7991	0.0014779	1.0614	0.00087191	2.8605	0.0023498	821.4411817201692	28.894	0.072384	28.894	28.87	28.943	0	462	49	1.3447032	0.028652906	1.3447032	273.82852		5.834717	0.0045615	0.00033586	0.00075972	NaN	31.561	116	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12975			27243	2136	15691	16142							0.01567022086101133
TVGVIVRL	8	Unmodified	_TVGVIVRL_					0	0	0		SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.78437027735	2	428.78437	855.554188	1.7979	0.00077089	-3.1882	-0.0013671	-1.3904	-0.00059618	428.7831115488079	23.079	0.1687	23.079	23.055	23.224	0	1359	52	0.8006399	0.03142917	0.8006399	325.8499	0	12.79126						164	8	3	NaN	NaN	NaN	0.23746	1	5479	5479		47.04	11.004	1	34056			27244	5611	15692	16143	21729	21729					0.12063269519410369
TVGVIVRL	8	Unmodified	_TVGVIVRL_					0	0	0		SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.78437027735	2	428.78437	855.554188	1.2939	0.00055481	-2.2334	-0.00095766	-0.93951	-0.00040285	428.7833947345468	23.127	0.12051	23.114	23.065	23.186	-0.013296	1359	55	0.8006399	0.033283353	0.7991205	325.84988	0	13.545898						153	6	3	NaN	NaN	NaN	0.23625	1	5340	5340		47.136	2.8334	1	33839			27245	5611	15692	16143	21730	21730					0.12063269519410369
TVIDYFHQLL	10	Unmodified	_TVIDYFHQLL_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8347884056501	2	624.834788	1247.65502	0.53345	0.00033332	0.38077	0.00023792	0.91421	0.00057123	625.3358304739991	33.14	0.12058	33.138	33.09	33.21	-0.0024757	1134	73	0.9387595	0.04402423	0.93724006	380.162	0	17.828156						198	6	3	NaN	NaN	NaN	0.77024	1	16978	16978		2.8895	0	1	15170			27246	4407	15693	16144	21731	21731					0.04110256711624061
TVIGTASS	8	Unmodified	_TVIGTASS_					0	0	0			REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.3883103289	1	735.38831	734.381034	1.4661	0.0010782	5.4827	0.0040319	6.9488	0.0051101	735.3924054230594	36.589	0.19256	36.591	36.543	36.735	0.0016747	585	58	1.2711272	0.034172773	1.2696078	259.34482	0	6.972168						201	9	2	NaN	NaN	NaN	0.77489	1	3744	3744		12.588	0	1	30453	+		27247	12597	15694	16145	21732	21732					0.0032185867233920362
TVIGTASS	8	Unmodified						0	0	0			REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	735.38831	734.381034	1.3375	0.0009836	5.8341	0.0042903	7.1716	0.0052739	735.3922456587912	36.591	0.19275	36.591	36.543	36.736	0	585	70	1.2711272	0.041380167	1.2711272	259.34482		8.442688	0.0001529	0.00015757	0.00075972	NaN	12.588	270	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33967	+		27248	12597	15694	16145							0.0032185867233920362
TVIGTASS	8	Unmodified						0	0	0			REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	REV__ENST00000520718.1_1_8:54963672-54965264:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	735.38831	734.381034	1.4661	0.0010782	5.4827	0.0040319	6.9488	0.0051101	735.3924054230594	36.589	0.19256	36.591	36.543	36.735	0.0016747	585	58	1.2711272	0.034172773	1.2696078	259.34482		6.972168	-0.0001529	-0.00010085	-0.00075972	NaN	12.588	201	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30453	+		27249	12597	15694	16145							0.0032185867233920362
TVISEDAVL	9	Unmodified	_TVISEDAVL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	946.5091537461	1	946.509154	945.501877	1.5976	0.0015122	-0.64951	-0.00061477	0.94812	0.0008974	946.5080659759268	24.864	0.16887	24.851	24.803	24.972	-0.012392	315	109	1.4322147	0.06411314	1.4306953	291.0128	0	13.027191						406	8	4	NaN	NaN	NaN	0.014046	1	6833	6833		80.639	16.089	1	103980			27250	952	15695	16146	21733	21733					0.026946415951329072
TVISPDPNL	9	Unmodified	_TVISPDPNL_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.5094880971	1	955.509488	954.502212	2.0319	0.0019415	-0.91047	-0.00086996	1.1215	0.0010716	955.5094044273611	23.055	0.04808	23.055	23.031	23.079	0	306	40	1.4375578	0.023150682	1.4375578	292.0589	0	4.7033997						58	3	2	NaN	NaN	NaN	0.12866	1	7195	7195		31.675	16.213	1	4040.7			27251	3643	15696	16147	21734	21734					0.023140613149848832
TVITPDPNL	9	Unmodified	_TVITPDPNL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.5251381612999	1	969.525138	968.517862	2.0304	0.0019685	-1.7902	-0.0017356	0.24018	0.00023286	969.5240008757589	23.513	0.09643	23.513	23.465	23.562	0	279	55	1.4535767	0.03201914	1.4535767	295.25253	0	6.5037537						122	5	3	NaN	NaN	NaN	0.0092442	1	7570	7570		93.929	41.305	1	13691			27252	5219	15697	16148	21735	21735					0.03234347832028561
TVITPDPNL	9	Unmodified	_TVITPDPNL_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.5251381612999	1	969.525138	968.517862	1.7698	0.0017159	-0.23323	-0.00022612	1.5366	0.0014897	969.5241051275473	23.537	0.096487	23.524	23.476	23.572	-0.01305	279	55	1.4535767	0.03201568	1.4520572	295.25253	0	6.5030823						116	5	2	NaN	NaN	NaN	1.1649E-05	1	7424	7424		128.29	78.333	1	15225			27253	5219	15697	16148	21736	21736					0.03234347832028561
TVKGGGAA	8	Unmodified	_TVKGGGAA_					0	0	0			REV__ENST00000513637.1_1_5:43495177-43495438:-|nuORF	REV__ENST00000513637.1_1_5:43495177-43495438:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3675153073	1	660.367515	659.360239	1.2846	0.00084829	-7.6654	-0.005062	-6.3808	-0.0042137	660.3594875048271	26.77	0.12069	26.759	26.759	26.88	-0.010645	756	130	1.1683017	0.07782805	1.1667823	238.86197	0	15.912109						271	6	2	NaN	NaN	NaN	0.84887	1	2209	2209		0.32989	0	1	20885	+		27254	12568	15698	16149	21737	21737					0.01693313083319481
TVKIVQPE	8	Unmodified	_TVKIVQPE_					0	0	0		nc|ENSG00000111700|Q9NPD5-2|SLCO1B3;ENSG00000111700|ENST00000381545|SLCO1B3	nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.27129269184996	2	457.271293	912.528032	0.83308	0.00038094	-1.7623	-0.00080584	-0.92919	-0.00042489	457.2701361944218	26.697	0.0965	26.687	26.639	26.735	-0.010645	1350	58	0.80618626	0.0351305	0.8046668	327.78372	0	14.283569						168	5	3	NaN	NaN	NaN	0.54116	1	6162	6162		28.896	1.1068	1	25705			27255	1829	15699	16150	21738	21738					0.06826955557278325
TVKKVQDKF	9	Unmodified	_TVKKVQDKF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;PIK3C3|p.R847H|1|0.11|ENSG00000078142|chr18:42067404-42067404|G/A|missense_variant;ENST00000587328.2_1_18:39644671-39661098:+|nuORF	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.82422371935	2	546.824224	1091.63389	2.8127	0.001538	-3.2818	-0.0017946	-0.46915	-0.00025654	546.8225076621267	19.876	0.048035	19.861	19.861	19.909	-0.014141	1215	25	0.8891654	0.014717579	0.88764596	360.64096	0	5.969391						36	3	2	NaN	NaN	NaN	0.64666	1	12164	12164		3.5698	0	1	1901.3			27256	878	15700	16151	21739	21739					0.09174291402746348
TVLENLLVL	9	Unmodified	_TVLENLLVL_					0	0	0		nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1	nc|ENSG00000118432|P21554-2|CNR1	nc|ENSG00000118432|P21554-2|CNR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.6241239244001	1	1013.62412	1012.61685	1.2186	0.0012352	0.28802	0.00029194	1.5066	0.0015271	1013.6247598282415	33.407	0.16893	33.407	33.359	33.528	0	120	64	1.5476005	0.037155986	1.5476005	314.1587	0	7.542572						170	8	3	NaN	NaN	NaN	0.013281	1	9099	9099		82.96	0	1	21238			27257	2175	15701	16152	21740	21740					0.11104370796954299
TVLGAPPC	8	Unmodified	_TVLGAPPC_					0	0	0		nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	nc|ENSG00000177675|Q9NR16-2|CD163L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.3912872168	1	757.391287	756.384011	1.2679	0.00096028	4.6083	0.0034903	5.8762	0.0044506	757.394712651829	35.07	0.12064	35.07	35.046	35.167	-4.5776E-05	546	49	1.294491	0.028738618	1.2929716	263.97086	0	5.8603516						135	6	2	NaN	NaN	NaN	0.81807	1	4095	4095		6.794	0	1	15942			27258	5083	15702	16153	21741	21741					-0.003925894745066216
TVLGLTVL	8	Unmodified	_TVLGLTVL_					0	0	0		ENST00000569839.1_1_16:57608733-57625590:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.5236815983	1	815.523682	814.516405	1.3938	0.0011367	-1.3134	-0.0010711	0.08039	6.556E-05	815.5228067101275	32.224	0.26543	32.22	32.148	32.413	-0.0037613	426	154	1.3661768	0.091326356	1.3646574	278.2346	0	18.599457						653	12	4	NaN	NaN	NaN	0.040055	1	4848	4848		82.858	6.5947	1	222990			27259	7642	15703	16154	21742	21742					0.10172758533940396
TVLGLTVL	8	Unmodified						0	0	0		ENST00000569839.1_1_16:57608733-57625590:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.523682	814.516405	1.9713	0.0016077	-0.74575	-0.00060818	1.2256	0.00099947	815.523099490368	32.225	0.21719	32.225	32.177	32.394	0	426	142	1.3661768	0.084145546	1.3661768	278.2346		17.137024	0.0024428	0.00015907	0.00075972	NaN	82.858	591	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209800			27260	7642	15703	16154							0.10172758533940396
TVLSFVLTV	9	Unmodified	_TVLSFVLTV_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5870101366002	1	978.58701	977.579734	1.3622	0.0013331	0.74286	0.00072695	2.1051	0.00206	978.5856031405909	35.675	0.048279	35.675	35.675	35.723	0	120	34	1.5476005	0.019460559	1.5476005	314.3099	0	3.9523315						64	3	3	NaN	NaN	NaN	0.56671	1	7830	7830		6.8632	0	1	4347.7	+		27261	10056	15704	16155	21743	21743					0.0900469925119296
TVLSFVLTV	9	Unmodified						0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	978.58701	977.579734	1.3622	0.0013331	0.74286	0.00072695	2.1051	0.00206	978.5856031405909	35.675	0.048279	35.675	35.675	35.723	0	120	34	1.5476005	0.019460559	1.5476005	314.3099		3.9523315	0.01249	-0.00085799	0.0016443	NaN	6.8632	64	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4347.7	+		27262	10056	15704	16155							0.0900469925119296
TVLSFVLTV	9	Unmodified						0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	978.58701	977.579734	1.3898	0.00136	2.0275	0.0019841	3.4173	0.0033441	978.5894360727533	35.649	0.096481	35.65	35.626	35.722	0.00052643	123	43	1.5458313	0.024771929	1.5443119	313.9506		5.031067	-0.01249	0.00039914	-0.0016443	NaN	6.8632	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6467.4	+		27263	10056	15704	16155							0.0900469925119296
TVLTFPLEM	9	Unmodified	_TVLTFPLEM_					0	0	0		ENST00000496783.1_1_21:43708308-43714771:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000172350|Q9H172-4|ABCG4;nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;nc|ENSG00000160179|P45844-7|ABCG1;ENSG00000172350|ENST00000619701|ABCG4;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;nc|ENSG00000160179|P45844-8|ABCG1	ENST00000496783.1_1_21:43708308-43714771:+|nuORF	ENST00000496783.1_1_21:43708308-43714771:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5539954486999	1	1050.554	1049.54672	2.3867	0.0025073	-11.139	-0.011702	-8.7525	-0.009195	1050.5456682563497	29.98	0.12067	29.98	29.932	30.053	0	159	58	1.5245869	0.03366363	1.5245869	309.34073	0	6.830414						133	6	2	NaN	NaN	NaN	0.56671	1	10614	10614		6.8632	1.9535	1	11431			27264	4045	15705	16156	21744	21744					0.023927491368112896
TVNADDLLK	9	Unmodified	_TVNADDLLK_					0	0	0		ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	330.1818349179666	3	330.181835	987.523675	2.6095	0.00086162	6.9927	0.0023089	9.6023	0.0031705	330.1838735787283	14.165	0.071863	14.154	14.106	14.177	-0.011219	1506	34	0.70979416	0.02044928	0.7082747	432.39423	0	12.457367						43	4	2	NaN	NaN	NaN	0.40649	1	7972	7972		8.9416	1.6523	1	2596.3			27265	2778	15706	16157	21745	21745					0.02941446343709231
TVNNFDSTVL	10	Unmodified	_TVNNFDSTVL_					0	0	0			REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	REV__tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2773033165	2	555.277303	1108.54005	1.0008	0.00055571	-9.5782	-0.0053185	-8.5774	-0.0047628	555.2721773016514	32.732	0.096519	32.732	32.635	32.732	0	1266	91	0.85786515	0.055268586	0.85786515	347.87964	0	22.412384						197	5	2	NaN	NaN	NaN	0.69717	1	13226	13226		8.2448	0.65458	1	33274	+		27266	13571	15707	16158	21746	21746					-0.009874724901919762
TVNTSLNVYR	10	Unmodified	_TVNTSLNVYR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8118446256001	2	583.811845	1165.60914	2.2298	0.0013018	-1.3066	-0.00076278	0.92327	0.00053901	583.8114529792466	17.597	0.11988	17.597	17.573	17.693	0	1209	52	0.892844	0.031259656	0.892844	361.84634	0	12.668701						152	6	3	NaN	NaN	NaN	0.10101	1	15328	15328		45.827	25.313	1	20135			27267	1934	15708	16159	21747	21747					0.032956115293927724
TVNTSLNVYR	10	Unmodified	_TVNTSLNVYR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8118446256001	2	583.811845	1165.60914	1.8388	0.0010735	-1.9307	-0.0011272	-0.091896	-5.365E-05	583.8107897084512	17.618	0.11982	17.604	17.58	17.7	-0.013786	1212	49	0.8910048	0.029422462	0.88948536	361.10098	0	11.924133						162	6	3	NaN	NaN	NaN	0.02603	1	14799	14799		61.199	38.113	1	19879			27268	1934	15708	16159	21748	21748					0.032956115293927724
TVPAGFTL	8	Unmodified	_TVPAGFTL_					0	0	0		ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant	ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4454312773001	1	805.445431	804.438155	1.9781	0.0015933	7.0842	0.0057059	9.0624	0.0072992	805.4509576701741	25.346	0.21707	25.334	25.214	25.431	-0.012011	501	70	1.3214091	0.041239023	1.3198897	269.1731	0	8.400482						223	10	2	NaN	NaN	NaN	0.74229	1	4709	4709		16.417	0	1	23302			27269	3575	15709	16160	21749	21749					0.028113259487213327
TVPGAGMY	8	Unmodified	_TVPGAGMY_					0	0	0			REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3	REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.18891412064994	2	398.188914	794.363275	1.28	0.00050968	-5.3905	-0.0021464	-4.1105	-0.0016367	398.1869817865378	29.762	0.096491	29.755	29.755	29.852	-0.0070667	1422	37	0.7617651	0.022239447	0.7602457	310.40494	0	9.062164						76	5	2	NaN	NaN	NaN	0.84692	1	4587	4587		1.4396	0	1	5997.5	+		27270	9848	15710	16161	21750	21750					-0.042131798541845455
TVPMLEDKFRS	11	Unmodified	_TVPMLEDKFRS_					0	0	0		ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266	ENSG00000169758|ENST00000388942|TMEM266	ENSG00000169758|ENST00000388942|TMEM266	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.5639504716999	3	441.56395	1321.67002	1.4939	0.00065965	3.6224	0.0015995	5.1163	0.0022592	441.8995202094514	27.253	0.096519	27.242	27.194	27.291	-0.010126	1428	22	0.7580582	0.012976527	0.75653875	460.1912	0	7.8776245						42	5	2	NaN	NaN	NaN	0.75417	1	18278	18278		3.9007	0.30617	1	3440.9			27271	4690	15711	16162	21751	21751					0.022053805172845387
TVQQVISER	9	Unmodified	_TVQQVISER_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2932877317	2	530.293288	1058.57202	1.7255	0.00091504	-2.0805	-0.0011032	-0.35491	-0.00018821	530.2921859124689	15.582	0.16812	15.582	15.558	15.726	0	1260	70	0.8615505	0.042397797	0.8615505	349.5765	0	17.203003						181	8	3	NaN	NaN	NaN	0.090258	1	11038	11038		37.231	5.5554	1	21173			27272	4223	15712	16163	21752	21752					0.04507939983614051
TVQQVISER	9	Unmodified	_TVQQVISER_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2932877317	2	530.293288	1058.57202	1.3658	0.00072427	-1.1795	-0.00062548	0.1863	9.8792E-05	530.2928574498425	15.604	0.14393	15.592	15.568	15.712	-0.012201	1260	64	0.8615505	0.03870684	0.8600311	349.5765	0	15.705383						176	7	3	NaN	NaN	NaN	0.23358	1	10801	10801		23.177	1.3416	1	25087			27273	4223	15712	16163	21753	21753					0.04507939983614051
TVSASATV	8	Unmodified	_TVSASATV_					0	0	0			REV__nc|ENSG00000185920|Q13635-4|PTCH1	REV__nc|ENSG00000185920|Q13635-4|PTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3883103288999	1	735.38831	734.381034	1.3912	0.0010231	7.0797	0.0052063	8.4709	0.0062294	735.3926972271737	30.366	0.096535	30.366	30.318	30.415	0	591	64	1.26753	0.037773848	1.26753	258.61087	0	7.706909						101	5	2	NaN	NaN	NaN	0.82797	1	3820	3820		5.4659	0	1	7226.1	+		27274	10978	15713	16164	21754	21754					0.0032185867232783494
TVSEESNVL	9	Unmodified	_TVSEESNVL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	977.4785818992001	1	977.478582	976.471305	1.8717	0.0018295	0.65743	0.00064263	2.5291	0.0024721	977.4797251373494	19.3	0.14396	19.3	19.252	19.396	0	327	58	1.425088	0.033860803	1.425088	289.4328	0	6.877075						197	7	3	NaN	NaN	NaN	0.060816	1	7791	7791		42.318	11.707	1	21548			27275	4557	15714	16165	21755	21755					-0.017871367898919743
TVSEESNVL	9	Unmodified	_TVSEESNVL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	977.4785818992001	1	977.478582	976.471305	1.8255	0.0017844	0.79904	0.00078104	2.6245	0.0025654	977.4791570409512	19.298	0.19224	19.284	19.26	19.452	-0.014141	327	55	1.425088	0.032073617	1.4235686	289.4328	0	6.514099						202	9	2	NaN	NaN	NaN	0.030669	1	7631	7631		58.235	20.933	1	24288			27276	4557	15714	16165	21756	21756					-0.017871367898919743
TVSGGSCL	8	Unmodified	_TVSGGSCL_					0	0	0			REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	REV__MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3341662684	1	723.334166	722.32689	1.5999	0.0011573	1.3538	0.00097926	2.9537	0.0021365	723.3345264965063	28.17	0.072382	28.17	28.17	28.243	0	531	43	1.3034686	0.025135517	1.3034686	266.02466	0	5.1299133						65	4	2	NaN	NaN	NaN	0.80692	1	3636	3636		8.2903	0	1	4785.9	+		27277	8758	15715	16166	21757	21757					-0.045380567508800596
TVSIIDRF	8	Unmodified	_TVSIIDRF_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.7689171784	2	475.768917	949.523281	1.5047	0.00071588	-4.4796	-0.0021312	-2.9749	-0.0014154	475.76742394255837	23.392	0.096512	23.379	23.307	23.403	-0.013296	1341	37	0.8117308	0.022172093	0.81021136	329.84732	0	9.009644						82	5	2	NaN	NaN	NaN	0.73961	1	6951	6951		16.584	2.5426	1	8657.6			27278	2846	15716	16167	21758	21758					0.046500714145167876
TVSLSTTE	8	Unmodified	_TVSLSTTE_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.21364042719995	2	419.21364	836.412728	1.6094	0.00067468	4.1089	0.0017225	5.7183	0.0023972	419.21544947392994	22.453	0.1686	22.453	22.429	22.597	0	1401	52	0.77473325	0.031490564	0.77473325	315.42	0	12.820862						158	8	2	NaN	NaN	NaN	0.54545	1	5218	5218		28.667	9.3818	1	22982			27279	5819	15717	16168	21759	21759					-0.012021933643836746
TVSLSTTE	8	Unmodified	_TVSLSTTE_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.21364042719995	2	419.21364	836.412728	0.98662	0.0004136	3.4222	0.0014346	4.4088	0.0018482	419.2152642739141	22.476	0.14463	22.462	22.414	22.559	-0.013733	1401	40	0.77473325	0.024075806	0.7732138	315.42	0	9.802063						163	7	3	NaN	NaN	NaN	0.65075	1	5090	5090		22.126	4.346	1	18281			27280	5819	15717	16168	21760	21760					-0.012021933643836746
TVSRSETQLFF	11	Unmodified	_TVSRSETQLFF_					0	0	0			REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.8380593761	2	657.838059	1313.66157	1.0583	0.00069622	-0.86905	-0.00057169	0.18929	0.00012452	657.8379092044486	35.988	0.048168	35.988	35.964	36.012	0	1107	58	0.9552588	0.03482431	0.9552588	386.63077	0	14.094788						99	3	2	NaN	NaN	NaN	0.57257	1	19014	19014		15.822	3.5152	1	8425	+		27281	8131	15718	16169	21761	21761					0.017281498723150435
TVSRSETQLFF	11	Unmodified						0	0	0			REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	657.838059	1313.66157	1.0583	0.00069622	-0.86905	-0.00057169	0.18929	0.00012452	657.8379092044486	35.988	0.048168	35.988	35.964	36.012	0	1107	58	0.9552588	0.03482431	0.9552588	386.63077		14.094788	0.00019356	5.4201E-05	-0.0019884	NaN	15.822	99	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8425	+		27282	8131	15718	16169							0.017281498723150435
TVSRSETQLFF	11	Unmodified						0	0	0			REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	REV__AluSc_dup6951|chr3:141926737-141927030:+|1.0307201625842164|0.3215900874894626|1.68|522.0|13|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	657.838059	1313.66157	1.1866	0.0007806	-0.95015	-0.00062504	0.23647	0.00015556	657.837207087779	35.987	0.096508	35.988	35.964	36.06	0.0011024	1098	58	0.960755	0.034820557	0.9592356	388.8553		14.093262	-0.00019356	-5.2496E-05	0.0019884	NaN	15.822	112	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8534.3	+		27283	8131	15718	16169							0.017281498723150435
TVSSLIIVR	9	Unmodified	_TVSSLIIVR_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.31349185755	2	494.313492	986.612431	1.019	0.00050369	-1.6178	-0.00079972	-0.59887	-0.00029603	494.31269381468053	22.042	0.024103	22.029	22.029	22.053	-0.013731	1248	79	0.8689189	0.047925293	0.86739945	352.89627	0	19.46402						70	2	2	NaN	NaN	NaN	0.33202	1	7947	7947		16.858	5.688	1	6888.4			27284	839	15719	16170	21762	21762					0.11858906374038725
TVSSLIIVR	9	Unmodified						0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	494.313492	986.612431	1.7819	0.00088082	-2.6457	-0.0013078	-0.86377	-0.00042697	494.3119423951897	22.019	0.048193	22.019	22.019	22.067	0	1254	85	0.8652351	0.051622987	0.8652351	351.40018		20.96582	-0.0050269	-0.00064555	-0.0010822	NaN	16.858	79	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8288.5			27285	839	15719	16170							0.11858906374038725
TVSYPDVSL	9	Unmodified	_TVSYPDVSL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.4935036819	1	980.493504	979.486227	2.1799	0.0021374	-0.95436	-0.00093574	1.2256	0.0012017	980.4928147166682	25.419	0.096544	25.419	25.371	25.467	0	255	94	1.4678029	0.055117726	1.4678029	298.09534	0	11.193817						297	5	3	NaN	NaN	NaN	0.042816	1	7863	7863		49.961	12.659	1	38142			27286	3027	15720	16171	21763	21763					-0.004336449219067617
TVSYPDVSL	9	Unmodified	_TVSYPDVSL_					0	0	0		ENST00000490894.1_1_3:170102333-170102591:+|nuORF;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	ENST00000490894.1_1_3:170102333-170102591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.4935036819	1	980.493504	979.486227	2.1796	0.0021371	0.58075	0.00056942	2.7604	0.0027065	980.4941546587564	25.419	0.12063	25.407	25.358	25.479	-0.012011	249	103	1.4713576	0.060461283	1.4698381	298.81726	0	12.279053						323	6	3	NaN	NaN	NaN	0.019103	1	7699	7699		73.133	23.3	1	40084			27287	3027	15720	16171	21764	21764					-0.004336449219067617
TVTEGHIP	8	Unmodified	_TVTEGHIP_					0	0	0		ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.22434249925	2	427.224342	852.434132	0.74219	0.00031708	-3.3342	-0.0014245	-2.592	-0.0011074	427.22308453361364	35.53	0.096508	35.53	35.506	35.603	0	1386	97	0.78399014	0.05920887	0.78399014	319.09207	0	24.098633						299	5	4	NaN	NaN	NaN	0.84207	1	5418	5418		3.5732	0	1	38597			27288	2683	15721	16172	21765	21765					0.0020123645499552367
TVTGVGDVF	9	Unmodified	_TVTGVGDVF_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4567242451001	1	894.456724	893.449448	1.9358	0.0017315	0.99468	0.0008897	2.9305	0.0026212	894.4573677963734	25.298	0.096472	25.298	25.274	25.371	0	408	82	1.3769034	0.04822564	1.3769034	280.00793	0	9.80719						162	5	2	NaN	NaN	NaN	0.062072	1	5973	5973		41.785	6.488	1	15088			27289	4181	15722	16173	21766	21766					-0.0015389674780408313
TVTGVGDVF	9	Unmodified	_TVTGVGDVF_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4567242451001	1	894.456724	893.449448	1.8099	0.0016189	0.49189	0.00043997	2.3018	0.0020589	894.457096421262	25.298	0.072353	25.286	25.262	25.334	-0.012011	408	79	1.3769034	0.046437025	1.375384	280.00793	0	9.443481						117	4	2	NaN	NaN	NaN	0.04947	1	5859	5859		47.136	16.526	1	11182			27290	4181	15722	16173	21767	21767					-0.0015389674780408313
TVTIKVPA	8	Unmodified	_TVTIKVPA_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.5189305714	1	828.518931	827.511654	1.5046	0.0012465	-3.7415	-0.0030999	-2.237	-0.0018534	828.5152084904486	30.68	0.16893	30.68	30.656	30.825	0	471	76	1.3393306	0.04479158	1.3393306	272.69604	0	9.119843						254	8	4	NaN	NaN	NaN	0.84455	1	5117	5117		2.7852	0	1	61507		+	27291	213	15723	16174	21768	21768					0.09099874391176854
TVTLLVAL	8	Unmodified	_TVTLLVAL_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	829.5393316625001	1	829.539332	828.532055	1.4333	0.001189	-0.13307	-0.00011039	1.3002	0.0010786	829.5390300204355	32.804	0.072369	32.804	32.756	32.828	0	393	61	1.3858368	0.035728455	1.3858368	282.15933	0	7.274414						136	4	3	NaN	NaN	NaN	0.19946	1	5125	5125		50.033	0	1	17785			27292	1487	15724	16175	21769	21769					0.11093045050995443
TVTPEAAQI	9	Unmodified	_TVTPEAAQI_					0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.25055724975	2	465.250557	928.486562	1.3182	0.00061327	-0.90737	-0.00042215	0.41079	0.00019112	465.249912319462	17.285	0.1198	17.285	17.237	17.357	0	1368	31	0.7950918	0.018496752	0.7950918	323.1905	0	7.5186157						77	6	2	NaN	NaN	NaN	0.51576	1	6559	6559		8.962	2.7118	1	6979.9			27293	6821	15725	16176	21770	21770					0.01945774797957256
TVTPEAAQI	9	Unmodified						0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.250557	928.486562	1.2068	0.00056145	-2.2327	-0.0010388	-1.0259	-0.00047732	465.249304996869	17.282	0.14394	17.268	17.196	17.34	-0.013567	1371	31	0.79324204	0.018496752	0.7917226	322.43857		7.518585	-0.0085386	-0.00048261	-0.0016846	NaN	8.962	77	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6325.1			27294	6821	15725	16176							0.01945774797957256
TVTSVVSSR	9	Unmodified	_TVTSVVSSR_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.26145628705007	2	468.261456	934.50836	1.5463	0.00072407	-2.9603	-0.0013862	-1.414	-0.00066211	468.2602648261094	13.949	0.11999	13.949	13.901	14.021	0	1350	40	0.80618626	0.02403146	0.80618626	327.66937	0	9.767426						103	6	2	NaN	NaN	NaN	0.10945	1	6715	6715		34.454	15.336	1	11826			27295	3108	15726	16177	21771	21771					0.03848579546536257
TVTSVVSSR	9	Unmodified	_TVTSVVSSR_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.26145628705007	2	468.261456	934.50836	0.53094	0.00024862	-1.2488	-0.00058477	-0.71787	-0.00033615	468.2606533740582	13.949	0.16791	13.938	13.914	14.082	-0.010672	1350	37	0.80618626	0.02218169	0.8046668	327.66937	0	9.015625						109	8	3	NaN	NaN	NaN	0.19268	1	6577	6577		25.801	5.3523	1	9938.5			27296	3108	15726	16177	21772	21772					0.03848579546536257
TVVEDVTVGR	10	Unmodified	_TVVEDVTVGR_					0	0	0		ENST00000554757.1_1_14:104198706-104199352:+|nuORF;ENSG00000100711|ENST00000311141|ZFYVE21;ENST00000555501.1_1_14:104193911-104199352:+|nuORF;nc|ENSG00000100711|Q9BQ24-2|ZFYVE21	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7931205562	2	537.793121	1073.57169	2.1061	0.0011326	-2.754	-0.0014811	-0.64793	-0.00034845	537.7922877190032	17.669	0.095846	17.669	17.669	17.765	0	1269	64	0.8560222	0.038723588	0.8560222	347.27103	0	15.709381						115	5	3	NaN	NaN	NaN	0.64611	1	11721	11721		11.739	1.9929	1	11499			27297	1270	15727	16178	21773	21773					0.03784520263752711
TVVEDVTVGR	10	Unmodified	_TVVEDVTVGR_					0	0	0		ENST00000554757.1_1_14:104198706-104199352:+|nuORF;ENSG00000100711|ENST00000311141|ZFYVE21;ENST00000555501.1_1_14:104193911-104199352:+|nuORF;nc|ENSG00000100711|Q9BQ24-2|ZFYVE21	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7931205562	2	537.793121	1073.57169	1.6686	0.00089739	-2.5198	-0.0013551	-0.85111	-0.00045772	537.7912999411817	17.69	0.095886	17.676	17.652	17.748	-0.013786	1269	40	0.8560222	0.023961365	0.85450274	347.27103	0	9.720642						113	5	3	NaN	NaN	NaN	0.47025	1	11417	11417		20.688	5.5123	1	10327			27298	1270	15727	16178	21774	21774					0.03784520263752711
TVVEDVTVGR	10	Unmodified						0	0	0		ENST00000554757.1_1_14:104198706-104199352:+|nuORF;ENSG00000100711|ENST00000311141|ZFYVE21;ENST00000555501.1_1_14:104193911-104199352:+|nuORF;nc|ENSG00000100711|Q9BQ24-2|ZFYVE21	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	ENST00000554757.1_1_14:104198706-104199352:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.793121	1073.57169	2.2685	0.00122	-9.5381	-0.0051295	-7.2696	-0.0039096	538.2885394888309	17.378	0.071962	17.364	17.364	17.436	-0.013569	1284	28	0.8468043	0.016599417	0.8452849	343.53156		6.7340393	-0.15231	-0.0043188	-0.0053687	NaN	11.739	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3159.9			27299	1270	15727	16178							0.03784520263752711
TVVGENGSVLR	11	Unmodified	_TVVGENGSVLR_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8118446256001	2	565.811845	1129.60914	1.9822	0.0011216	-1.8356	-0.0010386	0.14657	8.2933E-05	565.8102792264458	16.686	0.12003	16.686	16.638	16.758	0	1245	37	0.87076044	0.022097886	0.87076044	353.02798	0	8.959045						122	6	3	NaN	NaN	NaN	0.36851	1	14074	14074		23.177	1.4056	1	14978			27300	3682	15728	16179	21775	21775					0.049516115293727125
TVVGENGSVLR	11	Unmodified	_TVVGENGSVLR_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENST00000528037.1_1_11:61891511-61905356:+|nuORF	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.8118446256001	2	565.811845	1129.60914	1.6157	0.0009142	-4.3853	-0.0024812	-2.7695	-0.001567	565.8093754703499	16.683	0.095856	16.669	16.645	16.741	-0.013294	1245	52	0.87076044	0.03129685	0.869241	353.02798	0	12.688507						138	5	3	NaN	NaN	NaN	0.46872	1	13624	13624		19.592	10.63	1	17729			27301	3682	15728	16179	21776	21776					0.049516115293727125
TVVGTDIAEL	10	Unmodified	_TVVGTDIAEL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.5462675339	1	1017.54627	1016.53899	2.1118	0.0021488	0.3721	0.00037863	2.4839	0.0025275	1017.5468721642746	26.311	0.096493	26.3	26.276	26.373	-0.011135	201	46	1.4997677	0.026610494	1.4982482	304.43295	0	5.401581						108	5	2	NaN	NaN	NaN	0.17937	1	9060	9060		37.302	3.877	1	11576			27302	7955	15729	16180	21777	21777					0.031383131409029374
TVVLDGLVI	9	Unmodified	_TVVLDGLVI_					0	0	0		ENST00000518683.5_1_8:87393755-87423767:+|nuORF;ENST00000466609.1_1_3:98376945-98377662:+|nuORF;WWP1|p.M804Nfs*5|1|0.15|ENSG00000123124|chr8:86457935-86457936|-/A|frameshift_variant;ENSG00000123124|ENST00000517970|WWP1	ENST00000518683.5_1_8:87393755-87423767:+|nuORF	ENST00000518683.5_1_8:87393755-87423767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.5713600724001	1	928.57136	927.564084	1.515	0.0014068	-1.2982	-0.0012055	0.21679	0.00020131	928.5711967195385	37.072	0.096287	37.072	37.024	37.121	0	228	52	1.4837929	0.030190468	1.4837929	301.5767	0	6.136139						113	5	2	NaN	NaN	NaN	0.062072	1	6544	6544		41.785	5.198	1	13024			27303	2358	15730	16181	21778	21778					0.09740412734140591
TVVVGVVNKMD	11	Unmodified	_TVVVGVVNKMD_					0	0	0			REV__ENSG00000267206|ENST00000341206|LCN6	REV__ENSG00000267206|ENST00000341206|LCN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.82082375065	2	580.820824	1159.62709	1.2941	0.00075164	7.226	0.004197	8.5201	0.0049486	581.3254883088541	34.131	0.12067	34.131	34.059	34.179	0	1209	37	0.892844	0.0220716	0.892844	361.86813	0	8.945587						110	6	3	NaN	NaN	NaN	0.77544	1	15141	15141		1.04	0.11417	1	8942.1	+		27304	11407	15731	16182	21779	21779					0.053666104598505626
TWDDAFATF	9	Unmodified	_TWDDAFATF_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.4574525265998	1	1073.45745	1072.45018	0.99031	0.0010631	0.66354	0.00071228	1.6538	0.0017753	1073.4582276634762	31.211	0.1448	31.211	31.163	31.308	0	207	142	1.496219	0.083299994	1.496219	303.50064	0	16.896973						423	7	3	NaN	NaN	NaN	0.028349	1	11648	11648		61.271	40.716	1	52492			27305	4686	15732	16183	21780	21780					-0.08315102098777061
TWDDAFATF	9	Unmodified	_TWDDAFATF_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.4574525265998	1	1073.45745	1072.45018	1.1325	0.0012157	0.61023	0.00065506	1.7428	0.0018708	1073.458445758864	31.21	0.24131	31.205	31.157	31.398	-0.0050716	204	133	1.4979934	0.077987075	1.496474	303.8606	0	15.819275						530	11	3	NaN	NaN	NaN	0.036546	1	11347	11347		52.624	20.171	1	56958			27306	4686	15732	16183	21781	21781					-0.08315102098777061
TWDEVTVEF	9	Unmodified	_TWDEVTVEF_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.5098820275998	1	1125.50988	1124.50261	2.1756	0.0024486	0.68863	0.00077507	2.8642	0.0032237	1125.510488754331	29.811	0.072422	29.811	29.787	29.86	0	129	67	1.5422925	0.03891909	1.5422925	312.66238	0	7.889923						116	4	3	NaN	NaN	NaN	0.043119	1	13861	13861		49.833	26.715	1	8962.7			27307	3985	15733	16184	21782	21782					-0.05466563755817333
TWDEVTVEF	9	Unmodified						0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1125.50988	1124.50261	1.2245	0.0013781	1.0121	0.0011391	2.2365	0.0025172	1125.5110474065536	29.786	0.072393	29.779	29.779	29.852	-0.0070648	126	67	1.544062	0.038915038	1.5425426	313.02112		7.8890686	-0.016045	0.0002498	0.00012504	NaN	49.833	109	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7293			27308	3985	15733	16184							-0.05466563755817333
TWDLALEL	8	Unmodified	_TWDLALEL_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5036744376999	1	960.503674	959.496398	0.69454	0.00066711	3.1044	0.0029818	3.7989	0.0036489	960.5072798535426	33.962	0.07238	33.962	33.938	34.01	0	258	76	1.4660252	0.04447341	1.4660252	297.82037	0	9.0346985						106	4	2	NaN	NaN	NaN	0.65075	1	7325	7325		22.126	5.7097	1	7962.1			27309	3002	15734	16185	21783	21783					0.015029628033175868
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.7663744894499	2	507.766374	1013.5182	1.8856	0.00095744	-2.82	-0.0014319	-0.93442	-0.00047447	507.7648794345296	28.267	0.16889	28.267	28.219	28.388	0	1311	55	0.83019954	0.033218563	0.83019954	337.04797	0	13.486206						180	8	3	NaN	NaN	NaN	0.31737	1	9126	9126		17.799	1.2148	1	23457			27310	3208	15735	16186	21784	21784					0.011977675518778597
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.5254725122999	1	1014.52547	1013.5182	2.1909	0.0022227	2.0279	0.0020574	4.2188	0.0042801	1014.5262619281108	28.267	0.096508	28.267	28.243	28.339	0	192	94	1.5050892	0.055012465	1.5050892	305.52533	0	11.167236						214	5	3	NaN	NaN	NaN	0.12328	1	9127	9127		32.453	21.848	1	20125			27311	3208	15735	16186	21785	21785					0.011977675518778597
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.7663744894499	2	507.766374	1013.5182	0.90233	0.00045817	-0.68507	-0.00034786	0.21725	0.00011031	507.7657711580359	28.266	0.072363	28.257	28.233	28.305	-0.0089779	1311	64	0.83019954	0.038761258	0.8286801	337.04797	0	15.73645						132	4	2	NaN	NaN	NaN	0.041983	1	8947	8947		50.315	22.526	1	24198			27312	3208	15735	16186	21786	21786					0.011977675518778597
TWDPALAQI	9	Unmodified	_TWDPALAQI_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.5254725122999	1	1014.52547	1013.5182	1.4513	0.0014724	2.4841	0.0025202	3.9354	0.0039926	1014.5271793931036	28.266	0.14475	28.257	28.233	28.378	-0.0089779	189	94	1.5068626	0.055018306	1.5053432	305.88535	0	11.1684265						210	7	2	NaN	NaN	NaN	0.25448	1	8948	8948		21.835	8.8322	1	18674			27313	3208	15735	16186	21787	21787					0.011977675518778597
TWFIFQCIN	9	Unmodified	_TWFIFQCIN_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.1916769144334	3	391.191677	1170.5532	1.6708	0.00065359	-4.8888	-0.0019124	-3.218	-0.0012589	391.18966113292174	11.692	0.19197	11.692	11.62	11.812	0	1515	28	0.7042165	0.016734898	0.7042165	428.0754	0	10.1727295						99	9	2	NaN	NaN	NaN	0.62619	1	15502	15502		2.3381	0	1	6591.6	+		27314	10846	15736	16187	21788	21788					-0.0252531291178002
TWFIFQCIN	9	Unmodified						0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	391.191677	1170.5532	1.6708	0.00065359	-4.8888	-0.0019124	-3.218	-0.0012589	391.18966113292174	11.692	0.19197	11.692	11.62	11.812	0	1515	28	0.7042165	0.016734898	0.7042165	428.0754		10.1727295	-0.18898	-0.0016993	0.00075972	NaN	2.3381	99	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6591.6	+		27315	10846	15736	16187							-0.0252531291178002
TWFIFQCIN	9	Unmodified						0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	391.191677	1170.5532	2.2101	0.00086458	-1.5207	-0.00059488	0.68942	0.0002697	391.1908165093213	12.078	0.048011	12.07	12.022	12.07	-0.0081854	1515	25	0.7042165	0.014874637	0.70269704	428.0754		9.041931	0.18898	0.0022534	-0.00075972	NaN	2.3381	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2454.1	+		27316	10846	15736	16187							-0.0252531291178002
TWFNQPARKI	10	Unmodified	_TWFNQPARKI_					0	0	0		ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	420.8997733515	3	420.899773	1259.67749	2.0043	0.0008436	-1.6651	-0.00070084	0.33917	0.00014276	420.89910985100704	18.149	0.16784	18.149	18.125	18.292	0	1461	31	0.7376554	0.018561065	0.7376554	448.033	0	11.273499						127	8	3	NaN	NaN	NaN	0.31689	1	17993	17993		27.046	16.081	1	11443			27317	4551	15737	16188	21789	21789					0.0580390089987759
TWFNQPARKI	10	Unmodified	_TWFNQPARKI_					0	0	0		ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.8460217939501	2	630.846022	1259.67749	2.1523	0.0013577	-0.74811	-0.00047194	1.4042	0.00088581	630.8447409125641	18.173	0.095961	18.173	18.125	18.221	0	1134	37	0.9387595	0.02200979	0.9387595	380.12228	0	8.91217						82	5	3	NaN	NaN	NaN	0.54515	1	17994	17994		21.771	8.308	1	7053.8			27318	4551	15737	16188	21790	21790					0.0580390089987759
TWFNQPARKI	10	Unmodified	_TWFNQPARKI_					0	0	0		ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000491523.5_1_16:89627367-89627472:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.8997733515	3	420.899773	1259.67749	1.8478	0.00077775	0.57479	0.00024193	2.4226	0.0010197	420.90004631559003	18.314	0.14401	18.3	18.252	18.396	-0.01395	1461	31	0.7376554	0.018559039	0.73613596	448.033	0	11.272308						135	7	3	NaN	NaN	NaN	0.49667	1	17218	17218		19.592	13.451	1	10958			27319	4551	15737	16188	21791	21791					0.0580390089987759
TWFPKTPMLF	10	Unmodified	_TWFPKTPMLF_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.33082733095	2	634.330827	1266.6471	0.99052	0.00062832	-3.5714	-0.0022655	-2.5809	-0.0016371	634.3286042680958	30.97	0.14479	30.97	30.897	31.042	0	1152	73	0.92775106	0.044028997	0.92775106	375.64233	0	17.827148						157	7	3	NaN	NaN	NaN	0.70538	1	18155	18155		7.6826	1.4324	1	15351			27320	4749	15738	16189	21792	21792					0.024444061904659975
TWFPKTPMLF	10	Unmodified	_TWFPKTPMLF_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.33082733095	2	634.330827	1266.6471	1.2863	0.00081592	-4.0624	-0.0025769	-2.7762	-0.001761	634.3283670657879	31.017	0.12069	31.012	30.964	31.084	-0.0050716	1152	73	0.92775106	0.044028997	0.9262317	375.64233	0	17.827148						143	6	2	NaN	NaN	NaN	0.49667	1	17347	17347		19.592	10.673	1	17582			27321	4749	15738	16189	21793	21793					0.024444061904659975
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.8476988156501	2	627.847699	1253.68084	1.3121	0.00082379	-2.0197	-0.0012681	-0.70767	-0.00044431	627.8464004230655	31.597	0.3138	31.597	31.525	31.839	0	1152	52	0.92775106	0.031195581	0.92775106	375.68423	0	12.632385						580	14	6	NaN	NaN	NaN	5.6321E-19	1	17881	17881		140.58	92.573	1	310750			27322	4737	15739	16190	21794	21794					0.06415150953898774
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8476988156501	2	627.847699	1253.68084	0.72412	0.00045463	-7.3601	-0.004621	-6.636	-0.0041664	628.3438774320479	32.634	0.14483	32.631	32.51	32.655	-0.0031052	1143	52	0.9332562	0.031185508	0.93173677	377.91348	0	12.628265						136	7	2	NaN	NaN	NaN	0.73057	1	17110	17110		5.4499	2.5605	1	17124			27323	4737	15739	16190	21795	21795					0.06415150953898774
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8476988156501	2	627.847699	1253.68084	0.70119	0.00044024	-3.0079	-0.0018885	-2.3067	-0.0014483	627.8456053078236	32.465	0.096512	32.462	32.414	32.51	-0.0031052	1146	37	0.93142134	0.022019207	0.9299019	377.17047	0	8.916504						89	5	2	NaN	NaN	NaN	0.3345	1	17111	17111		24.393	11.391	1	13228			27324	4737	15739	16190	21796	21796					0.06415150953898774
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.8476988156501	2	627.847699	1253.68084	0.81097	0.00050917	-0.87732	-0.00055082	-0.066346	-4.1655E-05	627.8475218163043	31.645	0.31379	31.64	31.568	31.881	-0.0044174	1149	70	0.92958635	0.04219216	0.9280669	376.4274	0	17.085327						646	14	5	NaN	NaN	NaN	1.6091E-15	1	17112	17112		119.59	81.457	1	303060			27325	4737	15739	16190	21797	21797					0.06415150953898774
TWFTAGAKLLF	11	Unmodified						0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.847699	1253.68084	1.2091	0.00075911	-2.3956	-0.0015041	-1.1865	-0.00074495	627.8460885541607	32.345	0.19304	32.345	32.201	32.394	0	1149	46	0.92958635	0.027525544	0.92958635	376.4274		11.14621	-0.14268	0.0021046	-0.0010752	NaN	5.4499	154	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15936			27326	4737	15739	16190							0.06415150953898774
TWFTAGAKLLF	11	Unmodified						0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.847699	1253.68084	0.74432	0.00046732	-2.7696	-0.0017389	-2.0253	-0.0012716	627.8460189397672	31.934	0.096533	31.93	31.906	32.003	-0.0037613	1149	34	0.92958635	0.020187557	0.9280669	376.4274		8.174774	0.16654	-0.0008794	0.0001579	NaN	140.58	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5983.9			27327	4737	15739	16190							0.06415150953898774
TWGSRMKWQW	10	Unmodified	_TWGSRMKWQW_					0	0	0			REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.88887990586665	3	455.88888	1364.64481	1.9674	0.00089691	5.5434	0.0025272	7.5108	0.0034241	455.8914864126894	18.532	0.047905	18.532	18.508	18.556	0	1371	25	0.79324204	0.014800608	0.79324204	481.3934	0	8.982025						40	3	2	NaN	NaN	NaN	0.78146	1	19739	19739		0.039382	0	1	2541	+		27328	12191	15740	16191	21798	21798					-0.02292629494627363
TWGSRMKWQW	10	Unmodified						0	0	0			REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	455.88888	1364.64481	1.9674	0.00089691	5.5434	0.0025272	7.5108	0.0034241	455.8914864126894	18.532	0.047905	18.532	18.508	18.556	0	1371	25	0.79324204	0.014800608	0.79324204	481.3934		8.982025	-0.099581	0.00056703	-0.00016517	NaN	0.039382	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2541	+		27329	12191	15740	16191							-0.02292629494627363
TWGSRMKWQW	10	Unmodified						0	0	0			REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	REV__ENST00000441189.3_1_X:41193512-41196673:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	455.88888	1364.64481	2.8463	0.0012976	4.5613	0.0020794	7.4076	0.003377	455.8909151157563	18.746	0.071932	18.731	18.66	18.731	-0.014059	1368	22	0.7950918	0.012948453	0.79357237	482.51596		7.8580017	0.099581	-0.00077616	0.00016517	NaN	0.039382	33	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1915.7	+		27330	12191	15740	16191							-0.02292629494627363
TWHYFKFRPRW	11	Unmodified	_TWHYFKFRPRW_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.9492385420667	3	541.949239	1622.82589	1.7035	0.00092323	6.0892	0.0033001	7.7928	0.0042233	541.9528013919353	19.588	0.096045	19.588	19.564	19.66	0	1389	43	0.7821392	0.025915146	0.7821392	473.89838	0	15.701996						147	5	4	NaN	NaN	NaN	0.78125	1	20772	20772		0.023298	0.0037362	1	14484	+		27331	9150	15741	16192	21799	21799					0.03938631873575105
TWHYFKFRPRW	11	Unmodified						0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	541.949239	1622.82589	1.7035	0.00092323	6.0892	0.0033001	7.7928	0.0042233	541.9528013919353	19.588	0.096045	19.588	19.564	19.66	0	1389	43	0.7821392	0.025915146	0.7821392	473.89838		15.701996	-0.16068	0.0009742	0.002611	NaN	0.023298	147	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14484	+		27332	9150	15741	16192							0.03938631873575105
TWHYFKFRPRW	11	Unmodified						0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	541.949239	1622.82589	1.4943	0.00080982	3.3698	0.0018263	4.8641	0.0026361	541.9507459637596	19.924	0.26475	19.909	19.813	20.078	-0.014141	1395	64	0.7784366	0.03886217	0.77691716	471.655		23.5466	0.16068	-0.0034471	-0.002611	NaN	0.023298	152	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14351	+		27333	9150	15741	16192							0.03938631873575105
TWIVSFTLKD	10	Unmodified	_TWIVSFTLKD_					0	0	0			REV__ENST00000433430.5_1_2:233103253-233124568:+|nuORF	REV__ENST00000433430.5_1_2:233103253-233124568:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.88865141353335	3	403.888651	1208.64412	1.5493	0.00062574	4.4175	0.0017842	5.9668	0.0024099	403.8909674782447	14.045	0.12006	14.045	13.973	14.093	0	1458	34	0.7395112	0.02041161	0.7395112	449.3654	0	12.403168						79	6	2	NaN	NaN	NaN	0.76025	1	16705	16705		1.8502	0.46621	1	5613	+		27334	8314	15742	16193	21800	21800					0.04814854337337238
TWLREEWG	8	Unmodified	_TWLREEWG_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.76162346255	2	538.761623	1075.50869	2.4352	0.001312	7.2296	0.0038951	9.6648	0.005207	538.7658589336178	26.07	0.1931	26.07	26.022	26.215	0	1266	124	0.85786515	0.0755052	0.85786515	348.0107	0	30.630219						551	9	4	NaN	NaN	NaN	0.27223	1	11782	11782		44.302	3.3455	1	145210			27335	1427	15743	16194	21801	21801					-0.026040007336405324
TWLVNSAAHLF	11	Unmodified	_TWLVNSAAHLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8325800677	2	629.83258	1257.65061	1.4735	0.00092805	-4.9725	-0.0031318	-3.499	-0.0022038	629.8297924458101	28.894	0.14481	28.894	28.87	29.015	0	1128	55	0.9424274	0.03301108	0.9424274	381.61417	0	13.367065						166	7	3	NaN	NaN	NaN	0.29849	1	17955	17955		25.681	9.8595	1	21502			27336	1149	15744	16195	21802	21802					0.03208792288683071
TWLVNSAAHLF	11	Unmodified	_TWLVNSAAHLF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8325800677	2	629.83258	1257.65061	0.99249	0.0006251	-6.0861	-0.0038332	-5.0936	-0.0032081	629.8296729142438	28.918	0.14482	28.909	28.837	28.982	-0.0083504	1125	58	0.9442611	0.034846902	0.94274163	382.35666	0	14.110443						194	7	4	NaN	NaN	NaN	0.065807	1	17183	17183		45.827	31.785	1	21231			27337	1149	15744	16195	21803	21803					0.03208792288683071
TWNLPSQRHK	10	Unmodified	_TWNLPSQRHK_					0	0	0			REV__ENSG00000152093|ENST00000281882|CFC1B	REV__ENSG00000152093|ENST00000281882|CFC1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8387280781001	2	633.838728	1265.6629	1.3465	0.00085349	-0.35257	-0.00022347	0.99397	0.00063002	633.8392145120208	28.17	0.048225	28.161	28.137	28.185	-0.0089779	1152	79	0.92775106	0.047703207	0.9262317	375.64548	0	19.314972						88	3	2	NaN	NaN	NaN	0.77024	1	17328	17328		2.8895	0	1	8024.3	+		27338	9664	15745	16196	21804	21804					0.04069828751744353
TWPLYSGPTGW	11	Unmodified	_TWPLYSGPTGW_					0	0	0			REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.80348827725	2	632.803488	1263.59242	1.8592	0.0011765	-9.6458	-0.0061039	-7.7866	-0.0049274	632.7975098614206	28.146	0.048262	28.146	28.122	28.17	0	1161	46	0.9222442	0.027534425	0.9222442	373.4224	0	11.148865						87	3	3	NaN	NaN	NaN	0.62211	1	18074	18074		12.57	4.9821	1	6301.3	+		27339	11772	15746	16197	21805	21805					-0.02882889356578744
TWPLYSGPTGW	11	Unmodified						0	0	0			REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.803488	1263.59242	1.8592	0.0011765	-9.6458	-0.0061039	-7.7866	-0.0049274	632.7975098614206	28.146	0.048262	28.146	28.122	28.17	0	1161	46	0.9222442	0.027534425	0.9222442	373.4224		11.148865	-0.0072103	0.0007012	0.00075972	NaN	12.57	87	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6301.3	+		27340	11772	15746	16197							-0.02882889356578744
TWPLYSGPTGW	11	Unmodified						0	0	0			REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	REV__ENST00000338154.10_1_X:53965491-53965584:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.803488	1263.59242	1.4664	0.00092793	-10.648	-0.006738	-9.1814	-0.00581	633.2988147615006	28.17	0.048225	28.161	28.137	28.185	-0.0089779	1161	43	0.9222442	0.025700212	0.92072475	373.4224		10.406189	0.0072103	-0.00056692	-0.00075972	NaN	12.57	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5511.2	+		27341	11772	15746	16197							-0.02882889356578744
TWPSSHNWFF	10	Unmodified	_TWPSSHNWFF_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.7934549072	2	654.793455	1307.57236	0.67605	0.00044267	-5.2017	-0.003406	-4.5256	-0.0029634	654.7917940314902	29.352	0.19302	29.344	29.344	29.537	-0.0077209	1128	61	0.9424274	0.036671042	0.94090796	381.4559	0	14.842926						228	9	3	NaN	NaN	NaN	0.25724	1	18057	18057		30.61	14.384	1	33000			27342	3402	15747	16198	21806	21806					-0.06912640296536665
TWRSRLTVDA	10	Unmodified	_TWRSRLTVDA_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.8252863518502	2	602.825286	1203.63602	1.051	0.00063358	2.6113	0.0015741	3.6623	0.0022077	602.8267316349824	24.357	0.12067	24.344	24.32	24.441	-0.012747	1179	106	0.9112251	0.06431645	0.90970564	369.15924	0	26.056152						327	6	2	NaN	NaN	NaN	0.44412	1	15932	15932		21.771	0	1	75333	+		27343	8953	15748	16199	21807	21807					0.042347201405846135
TWSYLLELIK	10	Unmodified	_TWSYLLELIK_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.3606390154	2	633.360639	1264.70673	0.58263	0.00036901	-3.544	-0.0022446	-2.9614	-0.0018756	633.3586011544942	42.912	0.28758	42.922	42.851	43.138	0.010418	1236	58	0.876284	0.03498262	0.8747646	354.80942	0	14.164551						298	13	3	NaN	NaN	NaN	0.76548	1	17304	17304		3.5698	0	1	25923	+		27344	8786	15749	16200	21808	21808					0.0849600040551195
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.26112193605	2	567.261122	1132.50769	2.0793	0.0011795	-1.237	-0.00070168	0.84229	0.0004778	567.2607077378217	28.074	0.19307	28.074	28.05	28.243	0	1260	82	0.8615505	0.049717486	0.8615505	349.28326	0	20.156067						273	9	3	NaN	NaN	NaN	0.023074	1	14166	14166		68.108	44.774	1	57440			27345	2093	15750	16201	21809	21809					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.5149674054999	1	1133.51497	1132.50769	2.7176	0.0030805	-0.75238	-0.00085284	1.9653	0.0022277	1133.513912078179	28.074	0.28959	28.074	28.026	28.315	0	66	139	1.579413	0.081324816	1.579413	320.16025	0	16.48523						727	13	5	NaN	NaN	NaN	0.00017726	1	14167	14167		118.2	80.902	1	174980			27346	2093	15750	16201	21810	21810					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5149674054999	1	1133.51497	1132.50769	1.1486	0.0013019	0.2793	0.00031659	1.4279	0.0016185	1133.515192918634	28.097	0.2896	28.088	28.04	28.33	-0.0089798	66	124	1.579413	0.07245827	1.5778936	320.16022	0	14.687927						640	13	4	NaN	NaN	NaN	0.00020136	1	13719	13719		116.74	66.421	1	138710			27347	2093	15750	16201	21811	21811					-0.05326259893195129
TWTPVAGL	8	Unmodified	_TWTPVAGL_					0	0	0			REV__nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	REV__nc|ENSG00000267493|Q8TBR5|CIRBP-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4563303146	1	844.45633	843.449054	1.7324	0.001463	4.2236	0.0035667	5.956	0.0050296	844.4601449475156	25.274	0.12058	25.262	25.214	25.334	-0.012011	444	49	1.3554435	0.028628469	1.353924	275.8915	0	5.8271484						87	6	2	NaN	NaN	NaN	0.57691	1	5176	5176		26.732	9.8733	1	5632.4	+		27348	13252	15751	16202	21812	21812					0.021067283229854183
TWVHGSLTM	9	Unmodified	_TWVHGSLTM_					0	0	0			REV__ENST00000264832.7_1_19:10396822-10396861:+|nuORF	REV__ENST00000264832.7_1_19:10396822-10396861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.4978775533	1	1031.49788	1030.4906	1.4046	0.0014489	-9.9866	-0.010301	-8.582	-0.0088523	1031.4880212953847	34.782	0.14476	34.782	34.734	34.879	0	168	55	1.5192716	0.031897068	1.5192716	308.33618	0	6.4735107						154	7	2	NaN	NaN	NaN	0.36492	1	9789	9789		15.175	3.6269	1	19545	+		27349	11566	15752	16203	21813	21813					-0.02342458979978801
TWVHGSLTM	9	Unmodified						0	0	0			REV__ENST00000264832.7_1_19:10396822-10396861:+|nuORF	REV__ENST00000264832.7_1_19:10396822-10396861:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1031.49788	1030.4906	1.4046	0.0014489	-9.9866	-0.010301	-8.582	-0.0088523	1031.4880212953847	34.782	0.14476	34.782	34.734	34.879	0	168	55	1.5192716	0.031897068	1.5192716	308.33618		6.4735107	0.0010413	-0.00013956	0.00075972	NaN	15.175	154	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19545	+		27350	11566	15752	16203							-0.02342458979978801
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8054996499501	2	590.8055	1179.59645	1.463	0.00086432	-2.3838	-0.0014084	-0.92084	-0.00054403	590.8037029198867	34.3	0.21702	34.3	34.228	34.445	0	1197	106	0.9001988	0.06436515	0.9001988	364.7765	0	26.081879						469	10	3	NaN	NaN	NaN	0.033206	1	15816	15816		58.235	32.121	1	104700			27351	4425	15753	16204	21814	21814					0.01383200137138374
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1180.6037228333	1	1180.60372	1179.59645	2.3877	0.002819	-0.1888	-0.0002229	2.1989	0.0025961	1180.6038798948546	34.3	0.14463	34.3	34.252	34.396	0	63	76	1.5811787	0.04415381	1.5811787	320.36392	0	8.946045						241	7	4	NaN	NaN	NaN	0.0010171	1	15817	15817		89.256	63.141	1	19455			27352	4425	15753	16204	21815	21815					0.01383200137138374
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8054996499501	2	590.8055	1179.59645	1.0172	0.00060095	-0.98677	-0.00058299	0.0304	1.7961E-05	590.8051994127429	34.299	0.28932	34.298	34.153	34.442	-0.0012474	1194	94	0.902037	0.0570091	0.9005176	365.52133	0	23.101105						519	13	3	NaN	NaN	NaN	0.091497	1	15234	15234		47.136	25.301	1	108770			27353	4425	15753	16204	21816	21816					0.01383200137138374
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1180.6037228333	1	1180.60372	1179.59645	1.7239	0.0020353	-0.55061	-0.00065006	1.1733	0.0013852	1180.6017850226258	34.299	0.14455	34.298	34.249	34.394	-0.0012474	66	73	1.579413	0.04238987	1.5778936	320.0062	0	8.588654						212	7	3	NaN	NaN	NaN	0.050502	1	15235	15235		52.78	29.445	1	18504			27354	4425	15753	16204	21817	21817					0.01383200137138374
TYAALQQGVI	10	Unmodified	_TYAALQQGVI_					0	0	0		tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2927564154501	2	532.292756	1062.57096	1.5862	0.00084433	-2.0782	-0.0011062	-0.49199	-0.00026189	532.7916605336171	24.116	0.096561	24.116	24.092	24.188	0	1281	43	0.84864825	0.025808692	0.84864825	344.32474	0	10.471466						76	5	2	NaN	NaN	NaN	0.56921	1	11244	11244		16.584	3.5813	1	9498.6			27355	13811	15754	16205	21818	21818					0.04217725614716983
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8194726924501	2	565.819473	1129.62439	2.4931	0.0014106	-2.8978	-0.0016396	-0.40475	-0.00022901	565.8177503118618	13.565	0.28827	13.565	13.493	13.781	0	1191	46	0.90387505	0.027570128	0.90387505	366.4534	0	11.177612						380	13	4	NaN	NaN	NaN	0.0085768	1	14080	14080		95.291	47.809	1	83240			27356	3759;7960	15755	16206	21819	21819					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.5487406171667	3	377.548741	1129.62439	2.4863	0.00093871	-2.0055	-0.00075719	0.48078	0.00018152	377.54811415773196	13.565	0.36036	13.565	13.493	13.853	0	1491	67	0.7190863	0.040878654	0.7190863	437.29846	0	24.859558						600	16	4	NaN	NaN	NaN	0.016254	1	14081	14081		66.481	37.986	1	379140			27357	3759;7960	15755	16206	21820	21820					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.5487406171667	3	377.548741	1129.62439	1.9043	0.00071896	-1.9747	-0.00074554	-0.0704	-2.658E-05	377.54799279198875	13.925	0.50337	13.914	13.699	14.202	-0.010673	1488	64	0.7209441	0.03901416	0.71942466	438.42825	0	23.725739						628	22	4	NaN	NaN	NaN	0.030669	1	13627	13627		43.776	16.729	1	274470			27358	3759;7960	15755	16206	21821	21821					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.8194726924501	2	565.819473	1129.62439	1.3232	0.00074869	-1.1897	-0.00067316	0.1335	7.5535E-05	565.8186599127255	13.925	0.38362	13.914	13.746	14.13	-0.010673	1191	43	0.90387505	0.02573073	0.9023556	366.45337	0	10.431885						326	17	3	NaN	NaN	NaN	0.019939	1	13628	13628		72.076	38.651	1	54643			27359	3759;7960	15755	16206	21822	21822					0.06476523117225952
TYAELMQTL	9	Unmodified	_TYAELMQTL_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.5234236018	1	1069.52342	1068.51615	1.9612	0.0020976	-0.86492	-0.00092505	1.0963	0.0011725	1069.524491436073	28.05	0.14477	28.05	28.001	28.146	0	87	55	1.5670487	0.031805873	1.5670487	317.883	0	6.4519653						183	7	3	NaN	NaN	NaN	0.00065562	1	11486	11486		115.07	56.471	1	18494			27360	1053	15756	16207	21823	21823					-0.015370292482202785
TYAELMQTL	9	Unmodified	_TYAELMQTL_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.5234236018	1	1069.52342	1068.51615	0.87959	0.00094074	-0.83191	-0.00088975	0.047679	5.0993E-05	1069.5242711888827	28.049	0.12066	28.04	28.016	28.137	-0.0089779	87	55	1.5670487	0.03180921	1.5655292	317.883	0	6.4526367						188	6	3	NaN	NaN	NaN	1.1649E-05	1	11208	11208		128.29	80.813	1	16586			27361	1053	15756	16207	21824	21824					-0.015370292482202785
TYAELMQTLRF	11	Unmodified	_TYAELMQTLRF_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.85011250635	2	686.850113	1371.68567	1.7715	0.0012168	-3.3458	-0.002298	-1.5742	-0.0010813	686.848526280333	29.232	0.16891	29.232	29.184	29.353	0	1086	61	0.9680805	0.036619663	0.9680805	391.64767	0	14.81488						221	8	3	NaN	NaN	NaN	0.15228	1	19815	19815		34.766	16.533	1	30568			27362	1053	15757	16208	21825	21825					0.014696670343255391
TYAELMQTLRF	11	Unmodified	_TYAELMQTLRF_					0	0	0		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.85011250635	2	686.850113	1371.68567	1.1919	0.00081865	-3.6123	-0.0024811	-2.4204	-0.0016624	687.3488847690503	29.231	0.28959	29.224	29.175	29.465	-0.0077209	1089	58	0.96624947	0.034783065	0.96473	390.9069	0	14.071869						229	13	4	NaN	NaN	NaN	0.01548	1	18882	18882		64.873	46.639	1	27227			27363	1053	15757	16208	21826	21826					0.014696670343255391
TYAFYNNCRR	10	Unmodified	_TYAFYNNCRR_					0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;nc|ENSG00000186204|Q9HCS2-2|CYP4F12;ENST00000451750.5_1_19:15783919-15791491:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	ENSG00000186204|ENST00000550308|CYP4F12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.53650625639995	3	436.536506	1306.58769	1.2172	0.00053136	3.2142	0.0014031	4.4314	0.0019345	436.5374093003477	21.585	0.072208	21.585	21.537	21.609	0	1431	43	0.75620437	0.025957286	0.75620437	459.12057	0	15.759644						97	4	3	NaN	NaN	NaN	0.71345	1	18877	18877		7.1304	1.9415	1	6890.9			27364	5458	15758	16209	21827	21827					-0.05334096771002805
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.77185379785	2	589.771854	1177.52915	1.8806	0.0011091	-2.0218	-0.0011924	-0.14124	-8.3297E-05	589.7700901761735	17.573	0.095848	17.573	17.549	17.645	0	1173	52	0.91489893	0.031232655	0.91489893	370.74075	0	12.6562805						107	5	3	NaN	NaN	NaN	0.050761	1	15732	15732		46.588	31.125	1	11325			27365	1855	15759	16210	21828	21828					-0.05250874864486832
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.77185379785	2	589.771854	1177.52915	1.5172	0.00089481	0.15664	9.2381E-05	1.6739	0.00098719	589.770901567244	17.618	0.16779	17.604	17.556	17.724	-0.013786	1173	43	0.91489893	0.02571404	0.9133795	370.74072	0	10.420013						144	8	3	NaN	NaN	NaN	0.19455	1	15160	15160		25.681	10.827	1	16114			27366	1855	15759	16210	21829	21829					-0.05250874864486832
TYANPAPA	8	Unmodified	_TYANPAPA_					0	0	0			REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	804.3886446798999	1	804.388645	803.381368	1.6346	0.0013148	2.6751	0.0021518	4.3097	0.0034666	804.3914564688796	31.307	0.096529	31.302	31.253	31.35	-0.0050716	474	40	1.3375392	0.0232867	1.3360198	272.46484	0	4.7436523						71	5	2	NaN	NaN	NaN	0.8439	1	4693	4693		3.1533	1.7138	1	4401.5	+		27367	10849	15760	16211	21830	21830					-0.02818721607820862
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.82388936835	2	621.823889	1241.63323	1.4385	0.00089452	-2.1605	-0.0013435	-0.72198	-0.00044894	621.8226178888532	36.567	0.21687	36.567	36.519	36.736	0	1149	106	0.92958635	0.06421244	0.92958635	376.46716	0	26.005005						606	10	5	NaN	NaN	NaN	3.9955E-11	1	17574	17574		104.2	69.745	1	101730			27368	3944	15761	16212	21831	21831					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.82388936835	2	621.823889	1241.63323	1.0238	0.00063665	-1.4419	-0.00089658	-0.41802	-0.00025993	621.8229153389367	36.589	0.21668	36.591	36.519	36.735	0.0016747	1146	97	0.93142134	0.058692634	0.9299019	377.21033	0	23.769562						509	10	4	NaN	NaN	NaN	0.00023361	1	16829	16829		80.901	53.605	1	79665			27369	3944	15761	16212	21832	21832					0.022074519630450595
TYAQRTQLF	9	Unmodified	_TYAQRTQLF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2958304206501	2	564.29583	1126.57711	1.8861	0.0010643	-4.2331	-0.0023887	-2.347	-0.0013244	564.2942912584639	19.372	0.095932	19.372	19.324	19.42	0	1221	58	0.885486	0.034967482	0.885486	359.00974	0	14.177124						165	5	3	NaN	NaN	NaN	0.49999	1	13966	13966		9.6116	0.64966	1	14869			27370	2574;7132	15762	16213	21833	21833					0.018882438462242135
TYARNLPAF	9	Unmodified	_TYARNLPAF_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7798162157001	2	526.779816	1051.54508	1.3538	0.00071317	-6.0839	-0.0032049	-4.7301	-0.0024917	526.777042667655	20.911	0.14455	20.911	20.838	20.983	0	1257	118	0.86339295	0.071884155	0.86339295	350.35416	0	29.169678						319	7	3	NaN	NaN	NaN	0.10363	1	10693	10693		35.296	8.5649	1	53077			27371	2613	15763	16214	21834	21834					0.021368761630810695
TYARNLPAF	9	Unmodified	_TYARNLPAF_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7798162157001	2	526.779816	1051.54508	0.79374	0.00041812	-5.2662	-0.0027741	-4.4724	-0.002356	526.7773341130273	20.935	0.14445	20.921	20.873	21.017	-0.014088	1254	91	0.8652351	0.055304408	0.86371565	351.10168	0	22.441833						219	7	2	NaN	NaN	NaN	0.032826	1	10477	10477		55.413	26.747	1	54839			27372	2613	15763	16214	21835	21835					0.021368761630810695
TYASFTRAYLL	11	Unmodified	_TYASFTRAYLL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3455202674502	2	653.34552	1304.67649	1.7732	0.0011585	-2.7783	-0.0018152	-1.0051	-0.00065665	653.3441014495255	25.974	0.12066	25.974	25.926	26.046	0	1095	43	0.9625867	0.025644839	0.9625867	389.62457	0	10.3802185						121	6	3	NaN	NaN	NaN	0.26033	1	18856	18856		27.046	15.308	1	11558			27373	2533	15764	16215	21836	21836					0.036336417403617816
TYASFTRAYLL	11	Unmodified	_TYASFTRAYLL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3455202674502	2	653.34552	1304.67649	1.681	0.0010982	-2.8375	-0.0018538	-1.1565	-0.0007556	653.3440800351634	25.998	0.12071	25.987	25.962	26.083	-0.011137	1095	37	0.9625867	0.021978915	0.96106726	389.62457	0	8.896362						105	6	3	NaN	NaN	NaN	0.64814	1	18022	18022		10.861	1.2498	1	9545.4			27374	2533	15764	16215	21837	21837					0.036336417403617816
TYAYLFKYI	9	Unmodified	_TYAYLFKYI_					0	0	0		ENST00000485996.1_1_14:21944657-21945031:-|nuORF;ENST00000475857.1_1_14:21942908-21945031:-|nuORF;ENSG00000129472|ENST00000397762|RAB2B	ENST00000485996.1_1_14:21944657-21945031:-|nuORF	ENST00000485996.1_1_14:21944657-21945031:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.3157001955001	2	591.3157	1180.61685	0.81286	0.00048066	-1.8635	-0.0011019	-1.0506	-0.00062124	591.3143435331558	29.014	0.14478	29.007	28.934	29.079	-0.0077209	1176	70	0.9130621	0.04223311	0.91154265	369.9852	0	17.113434						290	7	4	NaN	NaN	NaN	0.12328	1	15264	15264		32.453	14.483	1	38080			27375	2604	15765	16216	21838	21838					0.033763707969455936
TYCATMVQHCE	11	Unmodified	_TYCATMVQHCE_					0	0	0		ENST00000547323.1_1_12:110902902-110906035:-|nuORF;ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3	ENST00000547323.1_1_12:110902902-110906035:-|nuORF	ENST00000547323.1_1_12:110902902-110906035:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.1718477694667	3	429.171848	1284.49371	0.86791	0.00037248	8.109	0.0034802	8.977	0.0038527	429.175421056203	29.569	0.14478	29.562	29.514	29.659	-0.0070667	1470	124	0.7320868	0.076046765	0.73056734	444.5577	0	46.17917						574	7	4	NaN	NaN	NaN	0.7072	1	17679	17679		3.0365	0.43706	1	76116			27376	1796	15766	16217	21839	21839					-0.13715319979792184
TYCLDEELVW	10	Unmodified	_TYCLDEELVW_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.7866465823	2	635.786647	1269.55874	1.5401	0.00097919	1.9265	0.0012248	3.4666	0.002204	636.2897340937548	24.164	0.12075	24.164	24.116	24.237	0	1146	67	0.93142134	0.040364265	0.93142134	377.11905	0	16.342896						186	6	3	NaN	NaN	NaN	0.5917	1	18223	18223		15.463	1.0377	1	43725			27377	2980	15767	16218	21840	21840					-0.06525678910657007
TYCVIAGSEN	10	Unmodified	_TYCVIAGSEN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7369567355	2	528.736957	1055.45936	2.6932	0.001424	-5.7835	-0.0030579	-3.0902	-0.0016339	529.2386033708125	27.301	0.048244	27.291	27.242	27.291	-0.010126	1302	25	0.8357362	0.014760554	0.8342168	339.11514	0	5.98938						23	3	2	NaN	NaN	NaN	0.77024	1	10633	10633		2.8895	0.10428	1	1251.5			27378	4943	15768	16219	21841	21841					-0.06615076804746423
TYDAEFQHFL	10	Unmodified	_TYDAEFQHFL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.79057786725	2	635.790578	1269.5666	1.6321	0.0010377	-5.2364	-0.0033292	-3.6043	-0.0022916	635.7871181227453	24.188	0.12061	24.175	24.127	24.248	-0.012749	1146	55	0.93142134	0.03302884	0.9299019	377.11908	0	13.372925						211	6	4	NaN	NaN	NaN	0.44412	1	17406	17406		21.771	4.9128	1	44267			27379	5678	15769	16220	21842	21842					-0.05739783598869508
TYDEIGVMF	9	Unmodified	_TYDEIGVMF_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.4812244361	1	1074.48122	1073.47395	1.4366	0.0015436	0.54601	0.00058667	1.9826	0.0021303	1074.4811006676957	30.511	0.16897	30.511	30.487	30.656	0	129	82	1.5422925	0.047792196	1.5422925	312.84262	0	9.694305						300	8	4	NaN	NaN	NaN	0.023074	1	11689	11689		68.108	33.67	1	40933			27380	3129	15770	16221	21843	21843					-0.059850046565770754
TYDEIGVMF	9	Unmodified	_TYDEIGVMF_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.4812244361	1	1074.48122	1073.47395	1.1923	0.0012811	0.44431	0.0004774	1.6366	0.0017585	1074.4815066860335	30.51	0.14476	30.505	30.456	30.601	-0.0057545	126	85	1.544062	0.049564958	1.5425426	313.20157	0	10.053894						259	7	3	NaN	NaN	NaN	0.018156	1	11388	11388		74.332	44.734	1	38139			27381	3129	15770	16221	21844	21844					-0.059850046565770754
TYDEIGVMF	9	Oxidation (M)	_TYDEIGVM(Oxidation (M))F_		TYDEIGVM(1)F		TYDEIGVM(90)F	0	0	1		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.4761390582	1	1090.47614	1089.46886	1.9132	0.0020863	0.68805	0.0007503	2.6012	0.0028366	1090.4774885595227	27.253	0.16895	27.253	27.229	27.398	0	159	79	1.5245869	0.046049	1.5245869	309.19357	0	9.338959						274	8	3	NaN	NaN	NaN	0.011118	1	12356	12356		89.521	62.79	1	33982			27382	3129	15770	16222	21845	21845		352			-0.07229308519208644
TYDEIGVMF	9	Oxidation (M)	_TYDEIGVM(Oxidation (M))F_		TYDEIGVM(1)F		TYDEIGVM(96)F	0	0	1		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.4761390582	1	1090.47614	1089.46886	0.94067	0.0010258	-0.0048707	-5.3114E-06	0.9358	0.0010205	1090.4772814612884	27.277	0.14479	27.267	27.218	27.363	-0.010126	159	85	1.5245869	0.049586058	1.5230675	309.19357	0	10.056274						268	7	3	NaN	NaN	NaN	0.0081087	1	12046	12046		96.245	59.659	1	31506			27383	3129	15770	16222	21846	21846		352			-0.07229308519208644
TYDIVVPTKG	10	Unmodified	_TYDIVVPTKG_					0	0	0			REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	REV__ENST00000593079.1_1_17:42392127-42392978:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8004142720499	2	546.800414	1091.58628	1.5246	0.00083367	-2.3564	-0.0012885	-0.83181	-0.00045483	546.7994400891697	28.315	0.096504	28.315	28.291	28.388	0	1224	43	0.883646	0.025761366	0.883646	358.4025	0	10.448669						117	5	3	NaN	NaN	NaN	0.44258	1	12474	12474		21.835	1.2795	1	18101	+		27384	9032	15771	16223	21847	21847					0.044145924118765834
TYDKINMTVQV	11	Unmodified	_TYDKINMTVQV_					0	0	0			REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.8919556666333	3	437.891956	1310.65404	1.7901	0.00078389	5.7404	0.0025137	7.5306	0.0032976	437.8953206727439	17.954	0.095936	17.94	17.916	18.012	-0.013786	1419	31	0.76361835	0.018530905	0.7620989	463.6068	0	11.250427						82	5	2	NaN	NaN	NaN	0.6678	1	18121	18121		9.6366	1.1804	1	8091.2	+		27385	13479	15772	16224	21848	21848					0.011136742803728339
TYDLPGNFL	9	Unmodified	_TYDLPGNFL_					0	0	0		nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1;UFL1|p.S350Rfs*7|1|0.19|ENSG00000014123|chr6:96538702-96538702|C/-|frameshift_variant	nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-3|UFL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5094880970998	1	1039.50949	1038.50221	1.7514	0.0018206	1.4442	0.0015013	3.1956	0.0033219	1039.5119983416198	30.246	0.14476	30.246	30.198	30.342	0	144	151	1.533442	0.08864045	1.533442	311.1803	0	17.987762						354	7	3	NaN	NaN	NaN	0.019103	1	10133	10133		73.133	43.535	1	43254			27386	433	15773	16225	21849	21849					-0.015499386850024166
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2594449143501	2	576.259445	1150.50434	1.7541	0.0010108	-1.6937	-0.00097599	0.060435	3.4826E-05	576.7599724633094	15.894	0.21584	15.894	15.87	16.086	0	1260	52	0.8615505	0.031313777	0.8615505	349.21753	0	12.692596						212	10	3	NaN	NaN	NaN	0.10206	1	14821	14821		33.425	12.977	1	23962			27387	3170	15774	16226	21850	21850					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2594449143501	2	576.259445	1150.50434	1.9452	0.001121	-0.5156	-0.00029712	1.4296	0.00082384	576.2592087381494	15.915	0.1676	15.903	15.855	16.023	-0.012611	1260	58	0.8615505	0.034993947	0.8600311	349.21753	0	14.184296						195	8	3	NaN	NaN	NaN	0.061945	1	14314	14314		47.482	28.363	1	25970			27388	3170	15774	16226	21851	21851					-0.06489509947186889
TYDPTYSDF	9	Unmodified	_TYDPTYSDF_					0	0	0		ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR	ENSG00000111424|ENST00000549336|VDR	ENSG00000111424|ENST00000549336|VDR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.4469474198	1	1108.44695	1107.43967	2.146	0.0023787	0.067783	7.5134E-05	2.2138	0.0024538	1108.44659380022	23.224	0.12053	23.224	23.2	23.32	0	129	61	1.5422925	0.0353961	1.5422925	312.72083	0	7.1770325						130	6	2	NaN	NaN	NaN	0.030669	1	13150	13150		58.235	39.072	1	11099			27389	1807	15775	16227	21852	21852					-0.10975129543840012
TYDPTYSDF	9	Unmodified	_TYDPTYSDF_					0	0	0		ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR	ENSG00000111424|ENST00000549336|VDR	ENSG00000111424|ENST00000549336|VDR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1108.4469474198	1	1108.44695	1107.43967	1.6489	0.0018277	0.64002	0.00070943	2.2889	0.0025371	1108.4476726273438	23.248	0.14477	23.234	23.21	23.355	-0.013294	129	61	1.5422925	0.03538847	1.540773	312.72083	0	7.1755066						170	7	3	NaN	NaN	NaN	0.011942	1	12777	12777		87.021	50.434	1	11931			27390	1807	15775	16227	21853	21853					-0.10975129543840012
TYDQVACKAMK	11	Unmodified	_TYDQVACKAMK_					0	0	0			REV__ENSG00000164972|ENST00000297623|C9orf24	REV__ENSG00000164972|ENST00000297623|C9orf24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.3019408932499	2	629.301941	1256.58933	1.9477	0.0012257	1.69	0.0010635	3.6377	0.0022892	629.3026703911327	23.513	0.048267	23.5	23.476	23.524	-0.013294	1122	37	0.9460945	0.022002578	0.9445751	383.10257	0	8.909515						74	3	3	NaN	NaN	NaN	0.72342	1	17158	17158		5.9198	0	1	6493.1	+		27391	10362	15776	16228	21854	21854					-0.028702237972765943
TYDVSFSTAGY	11	Unmodified	_TYDVSFSTAGY_					0	0	0			REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.7667684199502	2	605.766768	1209.51898	1.0189	0.00061724	-0.23765	-0.00014396	0.78128	0.00047328	606.268134430468	24.43	0.16888	24.43	24.309	24.478	0	1188	70	0.90571284	0.042255938	0.90571284	366.90588	0	17.11795						254	8	5	NaN	NaN	NaN	0.63005	1	16710	16710		12.049	1.6885	1	45939	+		27392	13435	15777	16229	21855	21855					-0.07739482589681757
TYDVSFSTAGY	11	Unmodified						0	0	0			REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	REV__tr|U7SMH1|U7SMH1_FUSNUBeta-lysine5,6-aminomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01863PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.766768	1209.51898	1.0189	0.00061724	-0.23765	-0.00014396	0.78128	0.00047328	606.268134430468	24.43	0.16888	24.43	24.309	24.478	0	1188	70	0.90571284	0.042255938	0.90571284	366.90588		17.11795	0	0	0	NaN	12.049	254	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45939	+		27393	13435	15777	16229							-0.07739482589681757
TYDYGGFTM	9	Unmodified	_TYDYGGFTM_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.4186241793	1	1054.41862	1053.41135	2.5621	0.0027015	-0.68421	-0.00072145	1.8779	0.0019801	1054.417934640043	26.094	0.24132	26.094	26.046	26.288	0	105	61	1.5564433	0.03536606	1.5564433	315.78937	0	7.175476						227	11	3	NaN	NaN	NaN	0.016254	1	10771	10771		76.739	37.28	1	25150			27394	4377	15778	16230	21856	21856					-0.11322150724777202
TYDYGGFTM	9	Unmodified	_TYDYGGFTM_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.4186241793	1	1054.41862	1053.41135	2.186	0.002305	-0.82488	-0.00086977	1.3612	0.0014352	1054.4180171074336	26.094	0.16893	26.083	26.035	26.204	-0.011137	102	76	1.5582114	0.044209957	1.556692	316.14807	0	8.969818						168	8	2	NaN	NaN	NaN	0.030669	1	10541	10541		58.235	19.318	1	23228			27395	4377	15778	16230	21857	21857					-0.11322150724777202
TYDYGGFTM	9	Oxidation (M)	_TYDYGGFTM(Oxidation (M))_		TYDYGGFTM(1)		TYDYGGFTM(130)	0	0	1		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4135388014	1	1070.41354	1069.40626	1.8083	0.0019356	0.32781	0.00035089	2.1361	0.0022865	1070.4134084219106	21.537	0.19283	21.537	21.513	21.705	0	138	52	1.5369828	0.030091405	1.5369828	311.78067	0	6.1040955						210	9	3	NaN	NaN	NaN	3.2142E-07	1	11514	11514		129.63	85.325	1	20243			27396	4377	15778	16231	21858	21858		468			-0.1256645458740877
TYDYGGFTM	9	Oxidation (M)	_TYDYGGFTM(Oxidation (M))_		TYDYGGFTM(1)		TYDYGGFTM(120)	0	0	1		nc|ENSG00000165119|P61978-3|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4135388014	1	1070.41354	1069.40626	1.3607	0.0014565	0.11091	0.00011872	1.4716	0.0015753	1070.4140948862453	21.537	0.19272	21.523	21.475	21.667	-0.014004	135	52	1.5387528	0.030091405	1.5372335	312.1397	0	6.1040955						201	9	3	NaN	NaN	NaN	0.00020136	1	11231	11231		116.74	80.149	1	20648			27397	4377	15778	16231	21859	21859		468			-0.1256645458740877
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.24854587705	2	597.248546	1192.48254	1.9013	0.0011356	-2.2358	-0.0013353	-0.33447	-0.00019976	597.2478203174607	22.332	0.38569	22.332	22.284	22.67	0	1173	100	0.91489893	0.060628116	0.91489893	370.68692	0	24.564545						827	17	5	NaN	NaN	NaN	0.0042638	1	16207	16207		104.2	59.896	1	497800			27398	2086	15779	16232	21860	21860					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.24854587705	2	597.248546	1192.48254	1.4337	0.00085626	-1.2816	-0.00076543	0.15208	9.0832E-05	597.247539643307	22.332	0.38552	22.318	22.173	22.559	-0.013731	1173	109	0.91489893	0.06615049	0.9133795	370.6869	0	26.802032						773	17	6	NaN	NaN	NaN	0.012861	1	15592	15592		84.233	53.623	1	492780			27399	2086	15779	16232	21861	21861					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.24854587705	2	597.248546	1192.48254	1.2066	0.00072066	0.57473	0.00034326	1.7814	0.0010639	597.2491967612307	23.947	0.1447	23.934	23.861	24.006	-0.013048	1182	76	0.9093879	0.045950234	0.90786844	368.454	0	18.617523						132	7	2	NaN	NaN	NaN	0.41766	1	15593	15593		13.003	0	1	12482			27400	2086	15779	16232	21862	21862					-0.10600314695761881
TYDYNFHSF	9	Unmodified						0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.248546	1192.48254	1.3769	0.00082235	-0.54397	-0.00032489	0.83292	0.00049746	597.2488823170122	23.803	0.072275	23.803	23.754	23.827	0	1173	37	0.91489893	0.02204299	0.91489893	370.6869		8.931122	-0.065624	-0.00058447	0.0035152	NaN	13.003	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5978.5			27401	2086	15779	16232							-0.10600314695761881
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.25055724975	2	555.250557	1108.48656	1.1386	0.00063223	0.05958	3.3082E-05	1.1982	0.00066531	555.2503491904562	31.839	0.28959	31.839	31.79	32.08	0	1242	79	0.87260187	0.047883928	0.87260187	353.85577	0	19.417786						607	13	5	NaN	NaN	NaN	0.013281	1	13210	13210		82.96	32.999	1	246300			27402	4572	15780	16233	21863	21863					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1109.4938380329	1	1109.49384	1108.48656	1.5739	0.0017462	1.009	0.0011194	2.5828	0.0028656	1109.4948111628448	31.839	0.28959	31.839	31.79	32.08	0	78	94	1.5723488	0.054779768	1.5723488	318.81146	0	11.107208						690	13	4	NaN	NaN	NaN	0.0040938	1	13212	13212		104.71	62.926	1	144270			27403	4572	15780	16233	21864	21864					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.25055724975	2	555.250557	1108.48656	1.0123	0.00056207	-0.14653	-8.1363E-05	0.86574	0.0004807	555.2503920635967	31.838	0.2896	31.833	31.761	32.05	-0.0044155	1239	82	0.87444305	0.04972291	0.8729236	354.60242	0	20.163544						569	13	4	NaN	NaN	NaN	0.013281	1	12836	12836		82.96	40.643	1	255470			27404	4572	15780	16233	21865	21865					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant;ENSG00000167842|ENST00000611091|MIS12	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1109.4938380329	1	1109.49384	1108.48656	0.66619	0.00073914	1.3251	0.0014702	1.9913	0.0022094	1109.4950601776413	31.838	0.31375	31.833	31.737	32.05	-0.0044155	75	112	1.5741152	0.06539607	1.5725957	319.1696	0	13.259796						732	14	4	NaN	NaN	NaN	0.0028258	1	12838	12838		108.53	71.945	1	132400			27405	4572	15780	16233	21866	21866					-0.06334225202044763
TYEDIDKRG	9	Unmodified	_TYEDIDKRG_					0	0	0		ENST00000498505.5_1_3:139068252-139075853:+|nuORF;ENSG00000175110|ENST00000680020|MRPS22	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.76710277095	2	548.767103	1095.51965	1.4756	0.00080979	-7.7242	-0.0042388	-6.2485	-0.003429	548.7621493282817	22.236	0.048218	22.236	22.212	22.26	0	1254	43	0.8652351	0.025791943	0.8652351	350.91946	0	10.460632						79	3	3	NaN	NaN	NaN	0.45297	1	12637	12637		11.548	1.8025	1	7448.1			27406	4981	15781	16234	21867	21867					-0.024286431500058825
TYEDIDKRG	9	Unmodified	_TYEDIDKRG_					0	0	0		ENST00000498505.5_1_3:139068252-139075853:+|nuORF;ENSG00000175110|ENST00000680020|MRPS22	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.76710277095	2	548.767103	1095.51965	1.2412	0.00068115	-8.9468	-0.0049097	-7.7055	-0.0042285	548.760889054532	22.235	0.072369	22.222	22.173	22.246	-0.013731	1251	46	0.8670771	0.027635753	0.8655577	351.66653	0	11.208435						99	4	3	NaN	NaN	NaN	0.47587	1	12312	12312		10.605	0	1	9566.2			27407	4981	15781	16234	21868	21868					-0.024286431500058825
TYEEGSHPEFL	11	Unmodified	_TYEEGSHPEFL_					0	0	0			REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.7907748325	2	654.790775	1307.567	1.2176	0.00079728	-9.7226	-0.0063662	-8.505	-0.005569	654.785103498895	34.71	0.21711	34.71	34.662	34.879	0	1116	76	0.94976085	0.04581654	0.94976085	384.4242	0	18.544647						377	10	4	NaN	NaN	NaN	0.48069	1	18887	18887		19.164	6.5939	1	69631	+		27408	8760	15782	16235	21869	21869					-0.07448408669665696
TYEEGSHPEFL	11	Unmodified						0	0	0			REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	654.790775	1307.567	1.2176	0.00079728	-9.7226	-0.0063662	-8.505	-0.005569	654.785103498895	34.71	0.21711	34.71	34.662	34.879	0	1116	76	0.94976085	0.04581654	0.94976085	384.4242		18.544647	-0.011017	-0.00085904	-0.00015671	NaN	19.164	377	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69631	+		27409	8760	15782	16235							-0.07448408669665696
TYEKFFGLL	9	Unmodified	_TYEKFFGLL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.3000501313002	2	559.30005	1116.58555	1.5291	0.00085522	-1.796	-0.0010045	-0.26689	-0.00014927	559.2992248279334	29.618	0.16895	29.618	29.57	29.739	0	1149	67	0.92958635	0.04038167	0.92958635	376.93045	0	16.374023						255	8	3	NaN	NaN	NaN	0.064504	1	13541	13541		40.957	9.2814	1	44037			27410	4235	15783	16236	21870	21870					0.031917977628836525
TYEKFFGLL	9	Unmodified	_TYEKFFGLL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.3000501313002	2	559.30005	1116.58555	1.1228	0.00062799	-2.0419	-0.001142	-0.91907	-0.00051403	559.2985003072133	29.642	0.193	29.635	29.586	29.779	-0.0070648	1146	121	0.93142134	0.07348472	0.9299019	377.6745	0	29.796722						338	9	3	NaN	NaN	NaN	0.084037	1	13146	13146		38.131	16.296	1	55634			27411	4235	15783	16236	21871	21871					0.031917977628836525
TYELRYFQI	9	Unmodified	_TYELRYFQI_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8191383414501	2	616.819138	1231.62372	1.2274	0.00075711	-5.8302	-0.0035962	-4.6027	-0.002839	616.8145026297614	26.819	0.21714	26.819	26.795	27.012	0	1122	97	0.9460945	0.05869901	0.9460945	383.18698	0	23.774261						634	10	5	NaN	NaN	NaN	0.026267	1	17316	17316		72.428	32.275	1	234210			27412	4243	15784	16237	21872	21872					0.01717683677520654
TYELRYFQI	9	Unmodified	_TYELRYFQI_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8191383414501	2	616.819138	1231.62372	0.99266	0.00061229	-6.6524	-0.0041033	-5.6597	-0.003491	616.8138544053058	26.866	0.26549	26.856	26.783	27.049	-0.010645	1122	100	0.9460945	0.06054312	0.9445751	383.18698	0	24.52118						681	12	5	NaN	NaN	NaN	0.07568	1	16592	16592		43.776	16.479	1	211640			27413	4243	15784	16237	21873	21873					0.01717683677520654
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.27202097335	2	600.272021	1198.52949	1.1075	0.0006648	-1.0009	-0.00060083	0.10657	6.3969E-05	600.2714776740654	20.164	0.21662	20.15	20.102	20.319	-0.014143	1188	70	0.90571284	0.042278767	0.9041934	366.94382	0	17.128998						321	10	3	NaN	NaN	NaN	0.14227	1	15768	15768		29.706	15.281	1	40746			27414	1814	15785	16238	21874	21874					-0.061834551446281694
TYERGTYYF	9	Unmodified						0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.272021	1198.52949	1.3695	0.00082205	0.056466	3.3895E-05	1.4259	0.00085594	600.2719401224157	20.141	0.16819	20.141	20.069	20.237	0	1188	61	0.90571284	0.03675419	0.90571284	366.94382		14.890747	-0.0047834	0.0007286	0.00075972	NaN	29.706	213	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33152			27415	1814	15785	16238							-0.061834551446281694
TYFAQEFRH	9	Unmodified	_TYFAQEFRH_					0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.7856298751001	2	599.78563	1197.55671	1.2677	0.00076036	-3.5737	-0.0021435	-2.306	-0.0013831	599.7830622083126	15.27	0.16814	15.27	15.246	15.414	0	1215	73	0.8891654	0.04413849	0.8891654	360.24307	0	17.882568						159	8	2	NaN	NaN	NaN	0.64666	1	16384	16384		3.5698	0.68031	1	12353	+		27416	8910	15786	16239	21875	21875					-0.03416926813565624
TYFAQEFRH	9	Unmodified						0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	599.78563	1197.55671	1.2677	0.00076036	-3.5737	-0.0021435	-2.306	-0.0013831	599.7830622083126	15.27	0.16814	15.27	15.246	15.414	0	1215	73	0.8891654	0.04413849	0.8891654	360.24307		17.882568	-0.053115	0.0010952	-0.0029185	NaN	3.5698	159	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12353	+		27417	8910	15786	16239							-0.03416926813565624
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.27984600545	2	589.279846	1176.54514	1.5306	0.00090197	-2.6564	-0.0015654	-1.1258	-0.0006634	589.2776802792645	20.887	0.2648	20.887	20.862	21.127	0	1185	73	0.90755045	0.044119358	0.90755045	367.7665	0	17.878479						351	12	3	NaN	NaN	NaN	0.0042638	1	15692	15692		104.2	64.74	1	78574			27418	2092	15787	16240	21876	21876					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.27984600545	2	589.279846	1176.54514	0.86742	0.00051115	-1.7193	-0.0010132	-0.8519	-0.00050201	589.2788778213281	20.911	0.21671	20.897	20.825	21.041	-0.014086	1185	79	0.90755045	0.04779601	0.906031	367.7665	0	19.368347						403	10	4	NaN	NaN	NaN	0.028569	1	15122	15122		60.984	39.149	1	84444			27419	2092	15787	16240	21877	21877					-0.03607168627581814
TYFDSVFRL	9	Unmodified	_TYFDSVFRL_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2927564154501	2	574.292756	1146.57096	0.91429	0.00052507	-5.5969	-0.0032143	-4.6826	-0.0026892	574.2892257453585	29.642	0.048275	29.635	29.61	29.659	-0.0070648	1209	73	0.892844	0.044119358	0.8913246	361.91663	0	17.883911						98	3	3	NaN	NaN	NaN	0.11656	1	14197	14197		33.425	14.262	1	13884			27420	1798	15788	16241	21878	21878					0.003537256147183143
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1074.5870101366002	1	1074.58701	1073.57973	1.5432	0.0016582	-0.092747	-9.9664E-05	1.4504	0.0015586	1074.5867361908893	36.808	0.14436	36.808	36.736	36.88	0	60	97	1.582944	0.056525826	1.582944	321.0881	0	11.465851						411	7	4	NaN	NaN	NaN	0.030391	1	11724	11724		58.599	22.013	1	60680			27421	417	15789	16242	21879	21879					0.04588699251212347
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.5870101366002	1	1074.58701	1073.57973	1.4467	0.0015546	-0.86774	-0.00093246	0.57896	0.00062214	1074.5859355098837	36.806	0.19238	36.807	36.759	36.952	0.0016785	60	91	1.582944	0.05299294	1.5814246	321.0881	0	10.749207						385	9	4	NaN	NaN	NaN	0.03623	1	11420	11420		52.758	11.298	1	54160			27422	417	15789	16242	21880	21880					0.04588699251212347
TYFKTVFGDG	10	Unmodified	_TYFKTVFGDG_					0	0	0		tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.7769391757502	2	567.776939	1133.53933	2.4366	0.0013834	-3.6219	-0.0020564	-1.1853	-0.00067299	567.775957069346	25.708	0.12062	25.708	25.684	25.805	0	1209	97	0.892844	0.058838546	0.892844	361.96606	0	23.853607						371	6	5	NaN	NaN	NaN	0.66626	1	14219	14219		10.36	0.61416	1	120290			27423	13737	15790	16243	21881	21881					-0.022102671392076445
TYFKTVFGDG	10	Unmodified						0	0	0		tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.776939	1133.53933	2.093	0.0011884	-1.9428	-0.0011031	0.1502	8.528E-05	567.7773780954279	25.732	0.16891	25.721	25.672	25.841	-0.0116	1209	97	0.892844	0.058844924	0.8913246	361.96606		23.856201	0.0061289	0.00089245	-0.00075972	NaN	10.36	383	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135530			27424	13737	15790	16243							-0.022102671392076445
TYFNGDLKNF	10	Unmodified	_TYFNGDLKNF_					0	0	0		nc|ENSG00000129680|Q8IWC1-2|MAP7D3;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.7931205562	2	609.793121	1217.57169	1.1693	0.00071306	-1.8043	-0.0011002	-0.63493	-0.00038717	610.2921274529947	23.079	0.096306	23.065	23.041	23.138	-0.013294	1176	73	0.9130621	0.044071734	0.91154265	369.85547	0	17.852203						124	5	2	NaN	NaN	NaN	0.5626	1	16251	16251		16.858	3.3953	1	13155			27425	2612	15791	16244	21882	21882					-0.02839479736235262
TYFPTWEGLF	10	Unmodified	_TYFPTWEGLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.80041427205	2	630.800414	1259.58628	1.4723	0.00092872	-1.4082	-0.00088827	0.064128	4.0452E-05	630.7992137168796	36.3	0.14445	36.301	36.253	36.397	0.0011024	1149	52	0.92958635	0.031198978	0.9280669	376.40817	0	12.633087						138	7	3	NaN	NaN	NaN	0.33935	1	17213	17213		26.115	11.69	1	16953			27426	4933	15792	16245	21883	21883					-0.03313407588098016
TYFPTWEGLFW	11	Unmodified	_TYFPTWEGLFW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF;ENST00000572445.1_1_17:1564285-1564453:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.8400707488	2	723.840071	1445.66559	0.62352	0.00045133	-2.6359	-0.001908	-2.0124	-0.0014566	723.8386968497105	40.609	0.16817	40.609	40.512	40.681	0	1047	37	0.99186665	0.021941006	0.99186665	401.06564	0	8.871948						154	8	3	NaN	NaN	NaN	0.006775	1	20364	20364		72.428	56.966	1	10244			27427	4933	15793	16246	21884	21884					-0.039417606339611666
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8009455883001	2	616.800946	1231.58734	1.2428	0.00076655	2.2834	0.0014084	3.5262	0.0021749	616.8019257718933	25.226	0.02412	25.226	25.226	25.25	0	1170	82	0.91673553	0.049583375	0.91673553	371.2961	0	20.082275						77	2	2	NaN	NaN	NaN	0.40649	1	17312	17312		13.463	3.8514	1	11321			27428	2303	15794	16247	21885	21885					-0.019191932191688466
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8009455883001	2	616.800946	1231.58734	1.4248	0.00087883	-0.57351	-0.00035374	0.85132	0.00052509	616.8008442205778	24.188	0.16889	24.175	24.055	24.224	-0.012749	1167	94	0.91857195	0.05692911	0.9170525	372.0399	0	23.057404						483	8	5	NaN	NaN	NaN	1.1649E-05	1	16586	16586		128.29	61.638	1	366370			27429	2303	15794	16247	21886	21886					-0.019191932191688466
TYFRFQEEI	9	Unmodified						0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.800946	1231.58734	1.315	0.00081112	2.1376	0.0013185	3.4527	0.0021296	616.8009392328421	25.37	0.072376	25.358	25.334	25.407	-0.012011	1140	85	0.93509084	0.051405966	0.9335714	378.73038		20.820435	0.066244	-7.477E-05	0.0084179	NaN	13.463	131	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17117			27430	2303	15794	16247							-0.019191932191688466
TYFSGNYF	8	Unmodified	_TYFSGNYF_					0	0	0		nc|ENSG00000143494|Q86V25-3|VASH2;ENST00000271776.4_1_1:213134679-213146780:+|nuORF;nc|ENSG00000143494|Q86V25-6|VASH2;nc|ENSG00000143494|Q86V25-2|VASH2;nc|ENSG00000143494|Q86V25-5|VASH2;ENSG00000143494|ENST00000517399|VASH2;ENSG00000071246|ENST00000167106|VASH1	nc|ENSG00000143494|Q86V25-3|VASH2	nc|ENSG00000143494|Q86V25-3|VASH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.71635029165003	2	499.71635	997.418148	0.87874	0.00043912	-3.1414	-0.0015698	-2.2626	-0.0011307	500.21466284578725	29.376	0.14478	29.368	29.32	29.465	-0.0077229	1326	82	0.8209676	0.049879134	0.81944823	333.37204	0	20.254517						225	7	3	NaN	NaN	NaN	0.79607	1	8288	8288		9.746	1.4557	1	19848			27431	777	15795	16248	21887	21887					-0.08066469781897467
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7946006126501	2	527.794601	1053.57465	0.76901	0.00040588	-1.0067	-0.00053133	-0.23769	-0.00012545	527.7941514727029	33.914	0.14476	33.914	33.866	34.01	0	1245	58	0.87076044	0.03499019	0.87076044	353.335	0	14.198242						184	7	3	NaN	NaN	NaN	0.24994	1	10809	10809		22.126	1.5709	1	21329			27432	3572	15796	16249	21888	21888					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5819247587	1	1054.58192	1053.57465	1.5776	0.0016637	-0.79613	-0.00083959	0.78144	0.0008241	1054.5818586982805	33.914	0.24135	33.914	33.866	34.107	0	72	127	1.5758814	0.07423735	1.5758814	319.7325	0	15.062134						471	11	4	NaN	NaN	NaN	0.00010594	1	10810	10810		122.55	78.247	1	132780			27433	3572	15796	16249	21889	21889					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7946006126501	2	527.794601	1053.57465	0.55989	0.00029551	-0.83	-0.00043807	-0.27011	-0.00014256	527.7945876483836	33.913	0.12061	33.911	33.863	33.984	-0.0012474	1239	55	0.87444305	0.0331468	0.8729236	354.82928	0	13.450226						187	6	3	NaN	NaN	NaN	0.12945	1	10584	10584		31.561	13.762	1	21665			27434	3572	15796	16249	21890	21890					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		ENST00000424167.2_1_7:75689738-75694307:+|nuORF;nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	ENST00000424167.2_1_7:75689738-75694307:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5819247587	1	1054.58192	1053.57465	1.2933	0.0013639	-0.41341	-0.00043598	0.87989	0.00092792	1054.5827964919076	33.913	0.19304	33.911	33.863	34.056	-0.0012474	69	94	1.5776473	0.054762244	1.5761279	320.09082	0	11.110809						449	9	4	NaN	NaN	NaN	0.014046	1	10585	10585		80.639	46.94	1	126220			27435	3572	15796	16249	21891	21891					0.05000395388583456
TYFTSGETF	9	Unmodified	_TYFTSGETF_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4571181755998	1	1052.45712	1051.44984	2.1639	0.0022774	-1.5276	-0.0016077	0.6363	0.00066968	1052.4550448976609	24.309	0.07242	24.296	24.296	24.368	-0.012749	183	34	1.510409	0.019503951	1.5088896	306.45676	0	3.9572754						58	4	2	NaN	NaN	NaN	0.14301	1	10452	10452		29.598	13.182	1	3778.3			27436	5474	15797	16250	21892	21892					-0.07382521818612986
TYGADFDLL	9	Unmodified	_TYGADFDLL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4778536177001	1	1014.47785	1013.47058	1.695	0.0017195	0.0683	6.9289E-05	1.7633	0.0017888	1014.4771418932507	30.584	0.1448	30.584	30.535	30.68	0	228	61	1.4837929	0.035512567	1.4837929	301.2025	0	7.208893						181	7	2	NaN	NaN	NaN	0.018156	1	9112	9112		74.332	42.771	1	26135			27437	560	15798	16251	21893	21893					-0.03561931438935062
TYGADFDLL	9	Unmodified	_TYGADFDLL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4778536177001	1	1014.47785	1013.47058	1.3862	0.0014063	0.77378	0.00078498	2.16	0.0021912	1014.4786246472092	30.583	0.19301	30.577	30.529	30.722	-0.0057545	225	73	1.4855686	0.042619705	1.4840492	301.56296	0	8.651581						259	9	3	NaN	NaN	NaN	0.014046	1	8936	8936		80.639	49.078	1	28004			27438	560	15798	16251	21894	21894					-0.03561931438935062
TYGAGSLI	8	Unmodified	_TYGAGSLI_					0	0	0		tr|U7SNA8|U7SNA8_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01876PE=4SV=1	tr|U7SNA8|U7SNA8_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01876PE=4SV=1	tr|U7SNA8|U7SNA8_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01876PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.409045771	1	781.409046	780.401769	1.3264	0.0010364	6.181	0.0048299	7.5074	0.0058664	781.4130701529313	32.056	0.12063	32.056	32.032	32.152	0	483	79	1.3321642	0.046610594	1.3321642	271.50418	0	9.499542						178	6	2	NaN	NaN	NaN	0.82332	1	4496	4496		6.0903	0	1	18827			27439	13782	15799	16252	21895	21895					0.0027844905199572167
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.777136141	2	604.777136	1207.53972	0.77566	0.0004691	4.6267	0.0027981	5.4023	0.0032672	604.7804914573984	27.277	0.24131	27.267	27.122	27.363	-0.010126	1173	79	0.91489893	0.047744393	0.9133795	370.634	0	19.341705						303	11	2	NaN	NaN	NaN	0.11611	1	15998	15998		38.131	18.794	1	65723			27440	5577	15800	16253	21896	21896					-0.05574892210051985
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892001	2	567.279315	1132.54408	2.8327	0.0016069	-1.5845	-0.00089884	1.2482	0.00070807	567.2782474103309	25.033	0.72383	25.033	24.912	25.636	0	1212	247	0.8910048	0.15121514	0.8910048	361.22424	0	61.304443						1951	31	5	NaN	NaN	NaN	1.2966E-07	1	14178	14178		136.74	81.324	1	4422800			27441	3736	15801	16254	21897	21897					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2793146892001	2	567.279315	1132.54408	2.4935	0.0014145	-0.47417	-0.00026899	2.0193	0.0011455	567.2789617779418	26.263	0.362	26.263	26.119	26.481	0	1203	61	0.8965218	0.03678602	0.8965218	363.4609	0	14.913483						352	16	2	NaN	NaN	NaN	0.12104	1	14183	14183		32.778	14.979	1	179550			27442	3736	15801	16254	21898	21898					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892001	2	567.279315	1132.54408	2.7371	0.0015527	-1.3745	-0.00077974	1.3626	0.00077297	567.2784919482303	25.033	0.386	25.021	24.972	25.358	-0.012011	1212	160	0.8910048	0.097583175	0.88948536	361.22424	0	39.56143						1911	17	5	NaN	NaN	NaN	7.355E-12	1	13727	13727		146.99	73.854	1	4238300			27443	3736	15801	16254	21899	21899					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2793146892001	2	567.279315	1132.54408	1.9362	0.0010984	-0.32466	-0.00018417	1.6115	0.00091419	567.2793112050492	26.239	0.28956	26.228	26.059	26.349	-0.011137	1203	67	0.8965218	0.04046899	0.89500237	363.4609	0	16.406616						329	12	2	NaN	NaN	NaN	0.032409	1	13729	13729		55.958	22.533	1	168450			27444	3736	15801	16254	21900	21900					-0.016893829964601537
TYGFIQVTL	9	Unmodified	_TYGFIQVTL_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5615236676	1	1041.56152	1040.55425	0.91338	0.00095134	0.25602	0.00026666	1.1694	0.001218	1041.5616507129675	31.573	0.19312	31.573	31.525	31.718	0	123	70	1.5458313	0.040699005	1.5458313	313.68634	0	8.258789						169	9	2	NaN	NaN	NaN	0.022082	1	10239	10239		69.363	21.361	1	26531			27445	1537	15802	16255	21901	21901					0.0355922472876955
TYGFIQVTL	9	Unmodified	_TYGFIQVTL_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5615236676	1	1041.56152	1040.55425	0.63127	0.00065751	-0.18391	-0.00019156	0.44736	0.00046595	1041.5609537620296	31.572	0.14482	31.568	31.519	31.664	-0.0044155	120	88	1.5476005	0.05132699	1.5460811	314.04535	0	10.415466						223	7	3	NaN	NaN	NaN	0.012861	1	10024	10024		84.233	41.915	1	27632			27446	1537	15802	16255	21902	21902					0.0355922472876955
TYGGSWKFLTF	11	Unmodified	_TYGGSWKFLTF_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.82696337355	2	653.826963	1305.63937	1.3647	0.0008923	-2.6039	-0.0017025	-1.2392	-0.00081021	653.8253165328915	29.763	0.12067	29.763	29.739	29.86	0	1110	37	0.95342636	0.021990776	0.95342636	385.91376	0	8.901093						114	6	2	NaN	NaN	NaN	0.26193	1	18868	18868		26.989	13.526	1	17129			27447	3566	15803	16256	21903	21903					-0.001220298054477098
TYGGSWKFLTF	11	Unmodified						0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	653.826963	1305.63937	0.56336	0.00036834	-0.95283	-0.00062298	-0.38946	-0.00025464	654.3281585087745	29.811	0.096491	29.803	29.755	29.852	-0.0070648	1104	40	0.9570911	0.023819447	0.95557165	387.39713		9.641296	0.020166	0.0011822	0.0010726	NaN	26.989	87	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13679			27448	3566	15803	16256							-0.001220298054477098
TYGLEVVVI	9	Unmodified	_TYGLEVVVI_					0	0	0		tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5662746945001	1	992.566275	991.558998	1.4916	0.0014806	-2.9669	-0.0029449	-1.4753	-0.0014643	992.564371921467	32.973	0.096584	32.973	32.973	33.069	0	210	94	1.4944444	0.055000782	1.4944444	303.45468	0	11.168182						162	5	2	NaN	NaN	NaN	0.27442	1	8284	8284		20.555	0	1	22317			27449	13776	15804	16257	21904	21904					0.062881088715244
TYGLVFLF	8	Unmodified	_TYGLVFLF_					0	0	0		ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.5236815983001	1	959.523682	958.516405	0.54631	0.00052419	0.99089	0.00095078	1.5372	0.001475	959.5245288678294	38.348	0.16817	38.348	38.299	38.468	0	213	85	1.4926696	0.04972291	1.4926696	303.23752	0	10.101288						298	8	3	NaN	NaN	NaN	0.30832	1	7296	7296		41.46	2.8522	1	35355			27450	5098	15805	16258	21905	21905					0.03548758533941054
TYGLVFLF	8	Unmodified	_TYGLVFLF_					0	0	0		ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.5236815983001	1	959.523682	958.516405	1.5965	0.0015319	0.17267	0.00016568	1.7692	0.0016976	959.5233643214407	38.345	0.21633	38.349	38.301	38.517	0.0040245	207	79	1.496219	0.04616642	1.4946996	303.9586	0	9.378754						279	10	3	NaN	NaN	NaN	0.12449	1	7159	7159		59.445	12.124	1	32486			27451	5098	15805	16258	21906	21906					0.03548758533941054
TYGNLLDYL	9	Unmodified	_TYGNLLDYL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5357028475999	1	1071.5357	1070.52843	1.0565	0.0011321	1.2262	0.0013139	2.2827	0.002446	1072.5403816399082	33.721	0.16892	33.721	33.673	33.842	0	63	118	1.5811787	0.06893098	1.5811787	320.7416	0	13.9826355						243	8	2	NaN	NaN	NaN	0.0028258	1	11580	11580		108.53	44.573	1	34646			27452	1146	15806	16259	21907	21907					-0.004016695135305781
TYGNLLDYL	9	Unmodified	_TYGNLLDYL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.5357028475999	1	1071.5357	1070.52843	0.6387	0.00068439	6.0533	0.0064863	6.692	0.0071707	1071.5456040996241	33.744	0.16899	33.742	33.694	33.863	-0.0018463	63	112	1.5811787	0.06538916	1.5796592	320.74158	0	13.26416						211	8	2	NaN	NaN	NaN	0.040769	1	11286	11286		50.831	15.534	1	30730			27453	1146	15806	16259	21908	21908					-0.004016695135305781
TYGPITVTI	9	Unmodified	_TYGPITVTI_					0	0	0		ENSG00000172543|ENST00000307886|CTSW;CTSW|p.L254M|1|0.2|ENSG00000172543|chr11:65883083-65883083|C/A|missense_variant	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5349745661002	1	964.534975	963.527698	1.7352	0.0016737	-0.067529	-6.5134E-05	1.6677	0.0016085	964.5346634400821	27.977	0.14476	27.977	27.929	28.074	0	273	73	1.4571344	0.042696714	1.4571344	295.99667	0	8.673248						203	7	4	NaN	NaN	NaN	0.14301	1	7448	7448		29.598	6.2639	1	27824			27454	4843	15807	16260	21909	21909					0.04447535837448413
TYGPITVTI	9	Unmodified	_TYGPITVTI_					0	0	0		ENSG00000172543|ENST00000307886|CTSW;CTSW|p.L254M|1|0.2|ENSG00000172543|chr11:65883083-65883083|C/A|missense_variant	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5349745661002	1	964.534975	963.527698	1.054	0.0010167	0.64394	0.0006211	1.698	0.0016378	964.5355435290976	27.977	0.14479	27.968	27.943	28.088	-0.0089798	273	73	1.4571344	0.042696714	1.4556149	295.99667	0	8.673248						209	7	3	NaN	NaN	NaN	0.021105	1	7294	7294		70.6	12.001	1	31156			27455	4843	15807	16260	21910	21910					0.04447535837448413
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.461809623	1	986.46181	985.454533	2.1504	0.0021213	0.37781	0.00037269	2.5282	0.002494	986.4617518956563	29.039	0.31376	29.039	28.991	29.305	0	282	154	1.4517976	0.09071612	1.4517976	294.82007	0	18.421936						848	14	4	NaN	NaN	NaN	0.00010594	1	8054	8054		122.55	72.517	1	192680			27456	4731;8112	15808	16261	21911	21911					-0.03877592885191916
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.461809623	1	986.46181	985.454533	1.7336	0.0017101	0.2624	0.00025885	1.996	0.0019689	986.4614856679616	29.038	0.28959	29.031	28.982	29.272	-0.0077229	282	142	1.4517976	0.0836544	1.4502782	294.82007	0	16.987885						769	13	4	NaN	NaN	NaN	0.00050979	1	7882	7882		115.51	71.207	1	185760			27457	4731;8112	15808	16261	21912	21912					-0.03877592885191916
TYGSHWQGW	9	Unmodified	_TYGSHWQGW_					0	0	0			REV__ENST00000520337.1_1_8:104387976-104388111:+|nuORF	REV__ENST00000520337.1_1_8:104387976-104388111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2435978849	2	561.243598	1120.47264	0.71254	0.00039991	-1.2405	-0.00069621	-0.52793	-0.0002963	561.7442181478102	33.744	0.12069	33.742	33.694	33.814	-0.0018463	1239	58	0.87444305	0.034986377	0.8729236	354.55582	0	14.1857605						184	6	3	NaN	NaN	NaN	0.61413	1	13284	13284		4.9097	0	1	15991	+		27458	12593	15809	16262	21913	21913					-0.08277457910480734
TYGSSGGL	8	Unmodified	_TYGSSGGL_					0	0	0			REV__SLC35C1|p.A336G|1|0.09|ENSG00000181830|chr11:45811247-45811247|C/G|missense_variant	REV__SLC35C1|p.A336G|1|0.09|ENSG00000181830|chr11:45811247-45811247|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3413601363001	1	741.34136	740.334084	1.8534	0.001374	7.6494	0.0056708	9.5027	0.0070448	741.3466725249494	23.224	0.072336	23.224	23.2	23.272	0	576	91	1.2765218	0.053982854	1.2765218	260.40707	0	11.012344						130	4	2	NaN	NaN	NaN	0.82332	1	3912	3912		6.0903	0.62448	1	11161	+		27459	13320	15810	16263	21914	21914					-0.0464700087879919
TYGSSGGL	8	Unmodified						0	0	0			REV__SLC35C1|p.A336G|1|0.09|ENSG00000181830|chr11:45811247-45811247|C/G|missense_variant	REV__SLC35C1|p.A336G|1|0.09|ENSG00000181830|chr11:45811247-45811247|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.34136	740.334084	1.8534	0.001374	7.6494	0.0056708	9.5027	0.0070448	741.3466725249494	23.224	0.072336	23.224	23.2	23.272	0	576	91	1.2765218	0.053982854	1.2765218	260.40707		11.012344	0.006929	-0.001227	0.00075972	NaN	6.0903	130	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11161	+		27460	13320	15810	16263							-0.0464700087879919
TYGTLAFLF	9	Unmodified	_TYGTLAFLF_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.540059944	1	1032.54006	1031.53278	1.4552	0.0015025	0.93189	0.00096222	2.387	0.0024647	1032.5407969099056	36.061	0.19306	36.061	36.012	36.205	0	111	73	1.5529068	0.042457223	1.5529068	315.15817	0	8.616608						218	9	2	NaN	NaN	NaN	0.03623	1	9852	9852		52.758	27.797	1	32527			27461	3112	15811	16264	21915	21915					0.018278397000358382
TYGTLAFLF	9	Unmodified	_TYGTLAFLF_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.540059944	1	1032.54006	1031.53278	1.2542	0.001295	-0.07838	-8.093E-05	1.1758	0.001214	1032.5400326462334	36.083	0.21693	36.084	36.012	36.229	0.0011024	108	58	1.5546752	0.033603072	1.5531558	315.5171	0	6.8196716						250	10	3	NaN	NaN	NaN	0.012648	1	9638	9638		84.879	51.18	1	30257			27462	3112	15811	16264	21916	21916					0.018278397000358382
TYGTLAFLF	9	Unmodified						0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.54006	1031.53278	2.058	0.002125	-1.9196	-0.0019821	0.13835	0.00014286	1032.5375791166714	36.276	0.048191	36.277	36.253	36.301	0.0011024	114	46	1.5511382	0.026528835	1.5496187	314.79926		5.3839417	0.10825	-0.002535	-0.001644	NaN	52.758	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3947			27463	3112	15811	16264							0.018278397000358382
TYGVSFFLV	9	Unmodified	_TYGVSFFLV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.540059944	1	1032.54006	1031.53278	1.267	0.0013082	2.1596	0.0022298	3.4265	0.003538	1032.5405000579576	35.41	0.26535	35.41	35.337	35.603	0	114	148	1.5511382	0.08675265	1.5511382	314.79926	0	17.606201						889	12	4	NaN	NaN	NaN	0.012648	1	9853	9853		84.879	40.576	1	261920			27464	3067	15812	16265	21917	21917					0.018278397000358382
TYGVSFFLV	9	Unmodified	_TYGVSFFLV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.540059944	1	1032.54006	1031.53278	1.13	0.0011667	1.385	0.00143	2.5149	0.0025968	1032.540166978017	35.408	0.26522	35.409	35.336	35.602	0.00053024	111	136	1.5529068	0.07965398	1.5513873	315.15817	0	16.165527						871	12	5	NaN	NaN	NaN	0.012648	1	9640	9640		84.879	53.318	1	257080			27465	3067	15812	16265	21918	21918					0.018278397000358382
TYHNDYQVA	9	Unmodified	_TYHNDYQVA_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7461703636001	2	555.74617	1109.47779	1.738	0.00096587	-4.3544	-0.0024199	-2.6164	-0.0014541	555.7449444166342	34.106	0.33774	34.105	34.032	34.37	-0.0012474	1236	94	0.876284	0.05707693	0.8747646	355.3451	0	23.145447						1157	14	7	NaN	NaN	NaN	0.18779	1	12874	12874		26.115	1.7147	1	749920	+		27466	10460	15813	16266	21919	21919					-0.07257198838510703
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4833329261002	1	1012.48333	1011.47606	2.0036	0.0020287	-0.55496	-0.00056189	1.4487	0.0014668	1012.4832384006337	22.26	0.14473	22.26	22.236	22.38	0	186	91	1.5086359	0.053229332	1.5086359	306.25363	0	10.805603						260	7	3	NaN	NaN	NaN	8.7755E-05	1	9027	9027		123.66	65.058	1	33556			27467	3978	15814	16267	21920	21920					-0.029222526471244237
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		ENST00000486564.5_1_2:31133891-31178528:-|nuORF;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	ENST00000486564.5_1_2:31133891-31178528:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4833329261002	1	1012.48333	1011.47606	1.4688	0.0014872	-0.82475	-0.00083504	0.64409	0.00065213	1012.4816047919811	22.259	0.14458	22.246	22.222	22.366	-0.013731	183	115	1.510409	0.067438245	1.5088896	306.61356	0	13.690002						267	7	3	NaN	NaN	NaN	0.0023856	1	8855	8855		109.86	60.025	1	35785			27468	3978	15814	16267	21921	21921					-0.029222526471244237
TYIGQGYVI	9	Unmodified	_TYIGQGYVI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5302235392002	1	1013.53022	1012.52295	2.3423	0.002374	-2.0741	-0.0021022	0.26825	0.00027188	1013.5273436084689	26.288	0.096571	26.288	26.263	26.36	0	201	43	1.4997677	0.024837732	1.4997677	304.44913	0	5.0420227						95	5	2	NaN	NaN	NaN	0.38313	1	9080	9080		14.425	2.8766	1	8927			27469	2332	15815	16268	21922	21922					0.017186516946708252
TYIHALDNGLF	11	Unmodified	_TYIHALDNGLF_					0	0	0		ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENSG00000109536|ENST00000226798|FRG1	ENSG00000109536|ENST00000226798|FRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.32204517115	2	632.322045	1262.62954	1.3618	0.00086109	-1.467	-0.00092764	-0.10525	-6.6549E-05	632.3218949721614	26.843	0.096531	26.843	26.819	26.915	0	1107	55	0.9552588	0.032986104	0.9552588	386.79337	0	13.356415						145	5	3	NaN	NaN	NaN	0.41324	1	18055	18055		33.907	21.338	1	20248			27470	1724	15816	16269	21923	21923					0.008727821891625354
TYIHALDNGLF	11	Unmodified	_TYIHALDNGLF_					0	0	0		ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENSG00000109536|ENST00000226798|FRG1	ENSG00000109536|ENST00000226798|FRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.32204517115	2	632.322045	1262.62954	1.1194	0.00070784	-0.89549	-0.00056624	0.22394	0.0001416	632.3210463889238	26.866	0.14484	26.856	26.832	26.976	-0.010645	1104	58	0.9570911	0.0348168	0.95557165	387.53525	0	14.097656						124	7	3	NaN	NaN	NaN	0.57786	1	17269	17269		20.688	7.2246	1	19899			27471	1724	15816	16269	21924	21924					0.008727821891625354
TYIHALDNGLF	11	Unmodified						0	0	0		ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENSG00000109536|ENST00000226798|FRG1	ENSG00000109536|ENST00000226798|FRG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	632.322045	1262.62954	1.0985	0.0006946	-5.8325	-0.003688	-4.734	-0.0029934	632.8194913105488	27.204	0.16892	27.194	27.098	27.267	-0.010126	1146	61	0.93142134	0.03669083	0.9299019	377.14136		14.856445	0.17554	-0.0027638	-0.012678	NaN	33.907	159	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21558			27472	1724	15816	16269							0.008727821891625354
TYIIMNFLI	9	Unmodified	_TYIIMNFLI_					0	0	0			REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	REV__tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3121032615501	2	564.312103	1126.60965	2.3609	0.0013323	-10.019	-0.0056539	-7.6583	-0.0043217	564.3066429371793	25.564	0.21711	25.564	25.419	25.636	0	1212	64	0.8910048	0.03861493	0.8910048	361.24716	0	15.655945						239	10	2	NaN	NaN	NaN	0.21199	1	13973	13973		24.562	0	1	66479	+		27473	13513	15817	16270	21925	21925					0.05141314924867402
TYIIPRSVLF	10	Unmodified	_TYIIPRSVLF_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8555238477501	2	604.855524	1207.69649	1.4349	0.00086789	-3.7661	-0.002278	-2.3313	-0.0014101	604.8537117765358	28.339	0.072357	28.339	28.315	28.388	0	1143	37	0.9332562	0.022016883	0.9332562	378.0702	0	8.91922						69	4	2	NaN	NaN	NaN	0.57785	1	16681	16681		16.226	0.76316	1	9494.1			27474	5472	15818	16271	21926	21926					0.10095437470931756
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.8315174352	2	579.831517	1157.64848	1.2224	0.00070881	-1.7275	-0.0010017	-0.50506	-0.00029285	579.8305015170813	31.187	0.26545	31.187	31.139	31.404	0	1158	64	0.92408	0.03856069	0.92408	374.5356	0	15.628906						405	12	4	NaN	NaN	NaN	0.017558	1	15078	15078		75.089	37.787	1	124170			27475	5667	15819	16272	21927	21927					0.0759636355087423
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.8315174352	2	579.831517	1157.64848	1.2664	0.0007343	-1.7795	-0.0010318	-0.51313	-0.00029753	579.8305410501409	31.234	0.21718	31.229	31.157	31.374	-0.0050716	1155	70	0.92591566	0.04223311	0.9243962	375.2796	0	17.11737						452	10	5	NaN	NaN	NaN	0.010878	1	14578	14578		90.252	52.949	1	135610			27476	5667	15819	16272	21928	21928					0.0759636355087423
TYILNGDYTL	10	Unmodified	_TYILNGDYTL_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.7953288941501	2	586.795329	1171.5761	1.8883	0.001108	-2.1566	-0.0012655	-0.26833	-0.00015745	586.7935930332791	22.356	0.14473	22.356	22.26	22.405	0	1203	61	0.8965218	0.036762178	0.8965218	363.31525	0	14.897858						185	7	3	NaN	NaN	NaN	0.38071	1	15542	15542		24.4	0	1	30769			27477	3854	15820	16273	21929	21929					-0.0028201531331433216
TYILNGDYTL	10	Unmodified						0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	586.795329	1171.5761	1.2343	0.0007243	-3.221	-0.0018901	-1.9867	-0.0011658	586.7931550096689	22.476	0.096445	22.462	22.438	22.535	-0.013733	1179	61	0.9112251	0.03675419	0.90970564	369.27374		14.894653	0.05302	-0.0010028	0.0065919	NaN	24.4	151	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12865			27478	3854	15820	16273							-0.0028201531331433216
TYIPPLLVAF	10	Unmodified	_TYIPPLLVAF_					0	0	0		ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF;ENSG00000205084|ENST00000258173|TMEM231	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.33389294865	2	567.333893	1132.65323	0.87297	0.00049527	-3.4074	-0.0019331	-2.5344	-0.0014378	567.3312832908981	38.275	0.14413	38.275	38.227	38.372	0	1227	49	0.88180584	0.029435158	0.88180584	357.49445	0	11.93335						119	7	3	NaN	NaN	NaN	0.15427	1	14208	14208		39.459	28.288	1	7802.2			27479	5917	15821	16274	21930	21930					0.09221247693653822
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2949647534001	2	557.294965	1112.57538	1.0248	0.00057112	-1.9839	-0.0011056	-0.95914	-0.00053453	557.2940450444053	34.01	0.28954	34.01	33.938	34.228	0	1239	58	0.87444305	0.034975052	0.87444305	354.58643	0	14.182343						293	13	2	NaN	NaN	NaN	0.00012056	1	13384	13384		121.66	55.002	1	123630			27480	5521	15822	16275	21931	21931					0.023591900376231933
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1113.5826530402	1	1113.58265	1112.57538	1.3004	0.0014482	0.021389	2.3819E-05	1.3218	0.001472	1113.582742654069	34.01	0.16897	34.01	33.962	34.131	0	60	58	1.582944	0.03354621	1.582944	320.94525	0	6.8015747						223	8	3	NaN	NaN	NaN	0.0042638	1	13385	13385		104.2	54.237	1	23443			27481	5521	15822	16275	21932	21932					0.023591900376231933
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2949647534001	2	557.294965	1112.57538	1.0939	0.00060961	-1.0703	-0.00059646	0.023587	1.3145E-05	557.2943172655918	34.009	0.21724	34.008	33.911	34.129	-0.0012474	1239	70	0.87444305	0.042329073	0.8729236	354.58643	0	17.164429						226	10	2	NaN	NaN	NaN	0.019103	1	13003	13003		73.133	28.494	1	106020			27482	5521	15822	16275	21933	21933					0.023591900376231933
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant;nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-2|FANCM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1113.5826530402	1	1113.58265	1112.57538	0.8453	0.00094131	2.1563	0.0024013	3.0016	0.0033426	1113.5852197986724	34.009	0.12069	34.008	33.96	34.08	-0.0012474	60	52	1.582944	0.030011892	1.5814246	320.94525	0	6.0849915						177	6	3	NaN	NaN	NaN	0.03533	1	13005	13005		53.14	24.245	1	18119			27483	5521	15822	16275	21934	21934					0.023591900376231933
TYIQKIFRM	9	Unmodified	_TYIQKIFRM_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.55835971296665	3	400.55836	1198.65325	1.2898	0.00051665	-3.3452	-0.0013399	-2.0553	-0.00082329	400.556709191198	22.525	0.12052	22.525	22.477	22.597	0	1428	43	0.7580582	0.025948882	0.7580582	460.67877	0	15.769348						111	6	3	NaN	NaN	NaN	0.25448	1	16430	16430		14.854	3.1151	1	10157			27484	997	15823	16276	21935	21935					0.06186924421990625
TYIQKIFRM	9	Unmodified	_TYIQKIFRM_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.33390133615	2	600.333901	1198.65325	1.4017	0.0008415	-2.872	-0.0017242	-1.4703	-0.00088266	600.3320313256755	22.525	0.096375	22.525	22.477	22.573	0	1158	46	0.92408	0.027534425	0.92408	374.38474	0	11.1553955						123	5	3	NaN	NaN	NaN	0.060816	1	16431	16431		42.318	21.869	1	18406			27485	997	15823	16276	21936	21936					0.06186924421990625
TYIQKIFRM	9	Unmodified	_TYIQKIFRM_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.55835971296665	3	400.55836	1198.65325	1.4175	0.00056779	-3.5385	-0.0014174	-2.121	-0.00084958	400.5569021303671	22.693	0.12058	22.68	22.655	22.776	-0.01354	1425	40	0.7599118	0.024096668	0.75839233	461.80524	0	14.643768						96	6	2	NaN	NaN	NaN	0.36492	1	15781	15781		9.6116	5.3015	1	7886.1			27486	997	15823	16276	21937	21937					0.06186924421990625
TYIQNFRFF	9	Unmodified	_TYIQNFRFF_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3140231738	2	618.314023	1234.61349	0.6444	0.00039844	7.4381	0.0045991	8.0825	0.0049975	618.8207312941139	28.532	0.072393	28.523	28.523	28.596	-0.0083485	1143	58	0.9332562	0.034865677	0.93173677	377.97702	0	14.120911						90	4	2	NaN	NaN	NaN	0.47587	1	16665	16665		10.605	4.3548	1	17890			27487	5861	15824	16277	21938	21938					0.005571207429284186
TYIQNFRFF	9	Unmodified						0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.314023	1234.61349	1.068	0.00066036	2.6416	0.0016333	3.7096	0.0022937	618.8175928766193	28.798	0.096504	28.798	28.75	28.846	0	1146	58	0.93142134	0.034865677	0.93142134	377.2339		14.120911	0.13726	-0.0026207	-0.0001577	NaN	10.605	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13273			27488	5861	15824	16277							0.005571207429284186
TYIRLYGRKF	10	Unmodified	_TYIRLYGRKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.5873067704332	3	439.587307	1315.74009	1.4814	0.00065122	-1.721	-0.00075651	-0.23952	-0.00010529	439.5865940316983	17.669	0.11991	17.669	17.621	17.741	0	1413	31	0.7673241	0.018526852	0.7673241	465.83795	0	11.247528						135	6	3	NaN	NaN	NaN	0.2358	1	19047	19047		20.688	4.0287	1	14089			27489	738	15825	16278	21939	21939					0.09485046968052302
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.3433119294999	2	628.343312	1254.67207	1.3227	0.00083109	-2.2861	-0.0014364	-0.9634	-0.00060534	628.3417818382701	20.477	0.12023	20.477	20.453	20.573	0	1062	40	0.9827221	0.023786128	0.9827221	397.9408	0	9.631866						112	6	3	NaN	NaN	NaN	0.47445	1	17894	17894		20.513	9.343	1	12653			27490	4123	15826	16279	21940	21940					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.3433119294999	2	628.343312	1254.67207	0.9687	0.00060868	-2.2994	-0.0014448	-1.3307	-0.00083612	628.3414421885677	20.598	0.21696	20.584	20.559	20.776	-0.014088	1062	37	0.9827221	0.021955252	0.98120266	397.9408	0	8.890472						132	10	2	NaN	NaN	NaN	0.41022	1	17128	17128		23.177	14.932	1	13548			27491	4123	15826	16279	21941	21941					0.05492177317387359
TYISFPLEL	9	Unmodified	_TYISFPLEL_					0	0	0		ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5768393807998	1	1082.57684	1081.56956	0.55334	0.00059903	-2.7465	-0.0029733	-2.1932	-0.0023743	1082.5732404750586	35.12	0.16893	35.12	35.048	35.217	0	69	82	1.5776473	0.047706246	1.5776473	319.9837	0	9.675964						200	8	2	NaN	NaN	NaN	0.019103	1	12057	12057		73.133	39.435	1	21220			27492	6181	15827	16280	21942	21942					0.03204091525935837
TYISFPLEL	9	Unmodified	_TYISFPLEL_					0	0	0		ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5768393807998	1	1082.57684	1081.56956	1.2604	0.0013644	-3.1774	-0.0034398	-1.917	-0.0020753	1082.5723285010165	35.119	0.12064	35.119	35.046	35.167	-4.5776E-05	69	88	1.5776473	0.051234603	1.5761279	319.9837	0	10.391602						190	6	2	NaN	NaN	NaN	0.028349	1	11743	11743		61.271	29.596	1	20585			27493	6181	15827	16280	21943	21943					0.03204091525935837
TYISGELVW	9	Unmodified	_TYISGELVW_					0	0	0		ENST00000563145.1_1_16:2578906-2579561:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2	ENST00000563145.1_1_16:2578906-2579561:+|nuORF	ENST00000563145.1_1_16:2578906-2579561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.5407882255001	1	1067.54079	1066.53351	1.9875	0.0021217	-0.89701	-0.00095759	1.0905	0.0011642	1067.5399747875892	29.908	0.14477	29.908	29.884	30.029	0	120	58	1.5476005	0.0336138	1.5476005	313.94525	0	6.8188477						141	7	3	NaN	NaN	NaN	0.032764	1	11402	11402		55.494	32.159	1	11394			27494	4116	15828	16281	21944	21944					0.0029063434910767683
TYISGELVW	9	Unmodified	_TYISGELVW_					0	0	0		ENST00000563145.1_1_16:2578906-2579561:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2	ENST00000563145.1_1_16:2578906-2579561:+|nuORF	ENST00000563145.1_1_16:2578906-2579561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1067.5407882255001	1	1067.54079	1066.53351	1.023	0.0010921	-0.029527	-3.1522E-05	0.99345	0.0010605	1067.5396207233478	29.907	0.07239	29.9	29.876	29.948	-0.0070667	117	49	1.5493695	0.028301835	1.54785	314.3041	0	5.741272						81	4	2	NaN	NaN	NaN	0.14301	1	11135	11135		29.598	10.48	1	8941			27495	4116	15828	16281	21945	21945					0.0029063434910767683
TYISTHYSQ	9	Unmodified	_TYISTHYSQ_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5054653516997	1	1099.50547	1098.49819	1.6756	0.0018423	4.8756	0.0053607	6.5512	0.0072031	1100.5102011502981	28.701	0.072435	28.701	28.677	28.75	0	102	109	1.5582114	0.06366575	1.5582114	315.98026	0	12.9104						174	4	2	NaN	NaN	NaN	0.31737	1	12774	12774		17.799	1.2148	1	22031			27496	6168	15829	16282	21946	21946					-0.04712028178732908
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7978715831001	2	584.797872	1167.58119	2.4119	0.0014105	-0.81253	-0.00047517	1.5993	0.00093529	584.7974955186655	23.513	0.21698	23.513	23.417	23.634	0	1194	64	0.902037	0.038606524	0.902037	365.56482	0	15.645905						440	10	4	NaN	NaN	NaN	0.0092442	1	15396	15396		93.929	35.693	1	168520			27497	2590	15830	16283	21947	21947					0.004102885493011854
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7978715831001	2	584.797872	1167.58119	2.1426	0.001253	-1.3635	-0.00079739	0.77906	0.00045559	584.7969191924844	23.537	0.2411	23.524	23.476	23.717	-0.01305	1194	82	0.902037	0.049658418	0.9005176	365.56482	0	20.124878						487	11	5	NaN	NaN	NaN	0.00068417	1	14864	14864		114.98	51.026	1	170910			27498	2590	15830	16283	21948	21948					0.004102885493011854
TYITNQAAVYF	11	Unmodified	_TYITNQAAVYF_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.82187799565	2	645.821878	1289.6292	1.8093	0.0011685	1.2004	0.00077522	3.0096	0.0019437	646.326021276762	27.567	0.26546	27.567	27.446	27.712	0	1131	73	0.94059354	0.044028997	0.94059354	380.76898	0	17.8237						384	12	4	NaN	NaN	NaN	0.26033	1	18589	18589		27.046	8.813	1	54250			27499	4620	15831	16284	21949	21949					-0.004026375306921182
TYITNQAAVYF	11	Unmodified	_TYITNQAAVYF_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.82187799565	2	645.821878	1289.6292	1.4825	0.00095741	2.9029	0.0018748	4.3854	0.0028322	646.3259048984771	27.59	0.16894	27.581	27.508	27.677	-0.009552	1131	73	0.94059354	0.044014752	0.93907416	380.76898	0	17.817963						387	8	4	NaN	NaN	NaN	0.021881	1	17761	17761		61.199	33.902	1	58586			27500	4620	15831	16284	21950	21950					-0.004026375306921182
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.2927564154501	2	520.292756	1038.57096	1.4002	0.00072853	0.68581	0.00035682	2.086	0.0010854	520.2924408554111	20.453	0.096134	20.453	20.429	20.525	0	1254	37	0.8652351	0.022104979	0.8652351	351.15833	0	8.971405						136	5	3	NaN	NaN	NaN	0.03533	1	10152	10152		53.14	16.554	1	24686			27501	4347	15832	16285	21951	21951					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.2927564154501	2	520.292756	1038.57096	1.2533	0.00065209	0.70638	0.00036752	1.9597	0.0010196	520.2928606418016	20.477	0.14436	20.463	20.415	20.559	-0.014141	1257	40	0.86339295	0.023948371	0.8618735	350.41068	0	9.719543						156	7	3	NaN	NaN	NaN	0.21451	1	9946	9946		24.4	6.6013	1	23563			27502	4347	15832	16285	21952	21952					0.053217256147036096
TYIVLVTSL	9	Unmodified	_TYIVLVTSL_					0	0	0		ENST00000515237.1_1_4:530517-533155:+|nuORF;ENST00000513239.5_1_4:527492-533155:+|nuORF;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG	ENST00000515237.1_1_4:530517-533155:+|nuORF	ENST00000515237.1_1_4:530517-533155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5975748229001	1	1008.59757	1007.5903	1.4468	0.0014593	-1.6402	-0.0016543	-0.19341	-0.00019507	1008.596058778817	32.008	0.26545	32.008	31.959	32.225	0	141	115	1.5352125	0.067323804	1.5352125	311.66486	0	13.66748						418	12	3	NaN	NaN	NaN	0.028349	1	8905	8905		61.271	2.6721	1	114540			27503	4932	15833	16286	21953	21953					0.08680681905616439
TYIVLVTSL	9	Unmodified	_TYIVLVTSL_					0	0	0		ENST00000515237.1_1_4:530517-533155:+|nuORF;ENST00000513239.5_1_4:527492-533155:+|nuORF;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG	ENST00000515237.1_1_4:530517-533155:+|nuORF	ENST00000515237.1_1_4:530517-533155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5975748229001	1	1008.59757	1007.5903	1.1082	0.0011177	-1.3953	-0.0014073	-0.28716	-0.00028963	1008.596007061784	32.007	0.21718	32.003	31.954	32.172	-0.0037575	138	97	1.5369828	0.05666983	1.5354633	312.02423	0	11.504578						398	10	3	NaN	NaN	NaN	0.0040938	1	8733	8733		104.71	1.6849	1	118620			27504	4932	15833	16286	21954	21954					0.08680681905616439
TYIWMEYDQPL	11	Unmodified	_TYIWMEYDQPL_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.8341280911501	2	729.834128	1457.6537	1.571	0.0011466	-10.252	-0.0074824	-8.6812	-0.0063359	729.8277212135675	27.929	0.14476	27.929	27.905	28.05	0	1029	49	1.0028336	0.02923268	1.0028336	405.4686	0	11.819458						270	7	5	NaN	NaN	NaN	0.44296	1	20413	20413		20.513	2.2798	1	41235			27505	1695	15834	16287	21955	21955					-0.05681745439437691
TYIWMEYDQPL	11	Unmodified	_TYIWMEYDQPL_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.8341280911501	2	729.834128	1457.6537	1.1202	0.00081754	-9.8784	-0.0072096	-8.7582	-0.0063921	729.8270857864352	27.952	0.19304	27.943	27.895	28.088	-0.009552	1026	55	1.0046607	0.032886803	1.0031413	406.20734	0	13.296875						302	9	5	NaN	NaN	NaN	0.44296	1	19432	19432		20.513	10.153	1	44704			27506	1695	15834	16287	21956	21956					-0.05681745439437691
TYIYNWAYGF	10	Unmodified	_TYIYNWAYGF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2980387586	2	649.298039	1296.58152	1.3868	0.00090042	-1.8078	-0.0011738	-0.42103	-0.00027338	649.2967434300944	32.635	0.14481	32.635	32.587	32.732	0	1113	70	0.9515937	0.042164862	0.9515937	385.20013	0	17.068115						292	7	4	NaN	NaN	NaN	0.15427	1	18711	18711		39.459	23.637	1	38192			27507	1871	15835	16288	21957	21957					-0.05490291730870922
TYIYNWAYGF	10	Unmodified	_TYIYNWAYGF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.2980387586	2	649.298039	1296.58152	0.93251	0.00060548	-1.8236	-0.001184	-0.89106	-0.00057856	649.2968039434803	32.634	0.24134	32.631	32.583	32.824	-0.0031052	1110	64	0.95342636	0.038490057	0.9519069	385.942	0	15.580566						338	11	4	NaN	NaN	NaN	0.068403	1	17876	17876		50.315	32.345	1	43486			27508	1871	15835	16288	21958	21958					-0.05490291730870922
TYKAAHIFF	9	Unmodified	_TYKAAHIFF_					0	0	0		ENST00000599648.1_1_19:7705628-7705700:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	366.5307984556667	3	366.530798	1096.57057	1.393	0.00051058	-3.1604	-0.0011584	-1.7674	-0.00064781	366.529896086425	20.935	0.072157	20.935	20.911	20.983	0	1491	31	0.7190863	0.018579185	0.7190863	437.4571	0	11.302673						54	4	2	NaN	NaN	NaN	0.51576	1	12704	12704		5.4499	1.5413	1	5383.7			27509	861	15836	16289	21959	21959					0.026143506855078158
TYKAAHIFF	9	Unmodified	_TYKAAHIFF_					0	0	0		ENST00000599648.1_1_19:7705628-7705700:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2925594502001	2	549.292559	1096.57057	1.172	0.00064377	-1.2413	-0.00068182	-0.069283	-3.8057E-05	549.2914744405183	20.935	0.16843	20.935	20.887	21.055	0	1209	85	0.892844	0.051511586	0.892844	362.11264	0	20.891632						256	8	4	NaN	NaN	NaN	0.16171	1	12705	12705		27.789	18.827	1	36165			27510	861	15836	16289	21960	21960					0.026143506855078158
TYKAAHIFF	9	Unmodified	_TYKAAHIFF_					0	0	0		ENST00000599648.1_1_19:7705628-7705700:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	ENST00000599648.1_1_19:7705628-7705700:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2925594502001	2	549.292559	1096.57057	1.0938	0.00060079	-0.67202	-0.00036913	0.42174	0.00023166	549.2919999734735	21.103	0.19269	21.089	21.017	21.21	-0.014004	1212	55	0.8910048	0.033114612	0.88948536	361.36673	0	13.430328						239	9	3	NaN	NaN	NaN	0.12945	1	12372	12372		31.561	16.548	1	29728			27511	861	15836	16289	21961	21961					0.026143506855078158
TYKALNTFI	9	Unmodified	_TYKALNTFI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.79767461785	2	535.797675	1069.5808	2.1309	0.0011417	-3.8743	-0.0020758	-1.7433	-0.00093408	535.7957844887694	23.417	0.14475	23.417	23.393	23.538	0	1257	58	0.86339295	0.034993947	0.86339295	350.27777	0	14.1970215						244	7	4	NaN	NaN	NaN	0.23499	1	11558	11558		23.086	2.5304	1	27590			27512	1497	15837	16290	21962	21962					0.04878913620086678
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.28459703235	2	582.284597	1162.55464	2.4473	0.001425	-0.87872	-0.00051166	1.5686	0.00091335	582.2841268984025	26.36	0.26549	26.36	26.263	26.529	0	1173	76	0.91489893	0.045930386	0.91489893	370.79602	0	18.61496						459	12	4	NaN	NaN	NaN	0.026443	1	15230	15230		63.765	40.43	1	157310			27513	6112	15838	16291	21963	21963					-0.02013400342048044
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.28459703235	2	582.284597	1162.55464	1.922	0.0011192	0.31829	0.00018534	2.2403	0.0013045	582.2843920610562	26.384	0.21717	26.373	26.324	26.542	-0.011137	1173	85	0.91489893	0.05144483	0.9133795	370.79602	0	20.849884						472	10	5	NaN	NaN	NaN	0.013959	1	14713	14713		80.901	52.406	1	151810			27514	6112	15838	16291	21964	21964					-0.02013400342048044
TYKFNFNKL	9	Unmodified	_TYKFNFNKL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8163986872501	2	587.816399	1173.61824	1.4858	0.00087339	-6.9775	-0.0041015	-5.4917	-0.0032281	588.3122718439237	20.573	0.2166	20.573	20.477	20.694	0	1182	85	0.9093879	0.051439285	0.9093879	368.52176	0	20.845337						290	10	4	NaN	NaN	NaN	0.032826	1	15608	15608		55.413	18.827	1	42876			27515	1561	15839	16292	21965	21965					0.038380048857106885
TYKFNFNKL	9	Unmodified	_TYKFNFNKL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.21335794703333	3	392.213358	1173.61824	1.0681	0.00041891	-0.92787	-0.00036392	0.14019	5.4984E-05	392.2126292474142	20.573	0.16852	20.573	20.525	20.694	0	1440	43	0.7506418	0.02596569	0.7506418	456.28232	0	15.783447						196	8	4	NaN	NaN	NaN	0.055351	1	15611	15611		39.039	22.181	1	26052			27516	1561	15839	16292	21966	21966					0.038380048857106885
TYKFNFNKL	9	Unmodified	_TYKFNFNKL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8163986872501	2	587.816399	1173.61824	0.97843	0.00057513	-6.5478	-0.0038489	-5.5694	-0.0032738	588.3142064558734	20.646	0.14469	20.632	20.608	20.752	-0.014086	1179	88	0.9112251	0.053256273	0.90970564	369.26627	0	21.581665						420	7	4	NaN	NaN	NaN	0.032689	1	15054	15054		55.592	10.427	1	39040			27517	1561	15839	16292	21967	21967					0.038380048857106885
TYKFNFNKL	9	Unmodified	_TYKFNFNKL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.21335794703333	3	392.213358	1173.61824	1.0525	0.00041281	-1.7536	-0.0006878	-0.70113	-0.00027499	392.2125047298926	20.646	0.19287	20.632	20.584	20.776	-0.014086	1440	76	0.7506418	0.046395063	0.7491224	456.28232	0	28.201538						195	9	3	NaN	NaN	NaN	0.23112	1	15056	15056		15.822	4.8568	1	23857			27518	1561	15839	16292	21968	21968					0.038380048857106885
TYKGLEEVLVP	11	Unmodified	_TYKGLEEVLVP_					0	0	0			REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3477286054	2	624.347729	1246.6809	0.66935	0.00041791	-0.76834	-0.00047971	-0.098996	-6.1808E-05	624.3473410437534	27.759	0.16898	27.75	27.702	27.87	-0.009552	1146	46	0.93142134	0.027522564	0.9299019	377.19354	0	11.145691						127	8	2	NaN	NaN	NaN	0.71564	1	16953	16953		6.4299	0.73577	1	16493	+		27519	11491	15840	16293	21969	21969					0.0674310616323055
TYKGLEEVLVP	11	Unmodified						0	0	0			REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	624.347729	1246.6809	1.4667	0.00091571	-2.0228	-0.0012629	-0.55612	-0.00034721	624.3462044348335	27.736	0.14478	27.736	27.688	27.833	0	1146	40	0.93142134	0.023852885	0.93142134	377.19354		9.659607	-0.0068767	-0.00063927	0.00075972	NaN	6.4299	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13412	+		27520	11491	15840	16293							0.0674310616323055
TYKGLEEVLVP	11	Unmodified						0	0	0			REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	624.347729	1246.6809	0.66935	0.00041791	-0.76834	-0.00047971	-0.098996	-6.1808E-05	624.3473410437534	27.759	0.16898	27.75	27.702	27.87	-0.009552	1146	46	0.93142134	0.027522564	0.9299019	377.19354		11.145691	0.0068767	0.00092715	-0.00075972	NaN	6.4299	127	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16493	+		27521	11491	15840	16293							0.0674310616323055
TYKISHRTEQ	10	Unmodified	_TYKISHRTEQ_					0	0	0			REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	REV__ENST00000517831.5_1_8:86133134-86133284:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.8280260060502	2	631.828026	1261.6415	1.6361	0.0010337	-1.318	-0.00083273	0.31809	0.00020098	632.3291414755487	24.092	0.21722	24.092	24.019	24.237	0	1125	91	0.9442611	0.055024385	0.9442611	382.3435	0	22.28009						456	10	4	NaN	NaN	NaN	0.47445	1	18033	18033		20.513	0	1	82435	+		27522	12583	15841	16294	21970	21970					0.02114398932394579
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.8211497141501	2	604.82115	1207.62775	1.2095	0.00073152	-5.7272	-0.0034639	-4.5177	-0.0027324	605.3171390051943	30.535	0.2896	30.535	30.463	30.753	0	1098	88	0.960755	0.053164423	0.960755	389.21045	0	21.537384						492	13	4	NaN	NaN	NaN	0.27507	1	16674	16674		20.513	3.655	1	83639			27523	408	15842	16295	21971	21971					0.032237731712484674
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.8211497141501	2	604.82115	1207.62775	0.73433	0.00044414	-3.396	-0.002054	-2.6617	-0.0016099	604.8194266754067	30.583	0.28951	30.577	30.505	30.794	-0.0057545	1098	85	0.960755	0.05132842	0.9592356	389.21045	0	20.79358						395	13	4	NaN	NaN	NaN	0.024221	1	16004	16004		66.656	37.761	1	73036			27524	408	15842	16295	21972	21972					0.032237731712484674
TYKQRPYTF	9	Unmodified	_TYKQRPYTF_					0	0	0		nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-4|WDTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.31148048485	2	602.31148	1202.60841	0.84576	0.00050941	3.1997	0.0019272	4.0455	0.0024366	602.3139869891388	29.328	0.096533	29.32	29.296	29.393	-0.0077209	1161	82	0.9222442	0.04956734	0.92072475	373.62695	0	20.081146						296	5	4	NaN	NaN	NaN	0.17328	1	15906	15906		27.046	0	1	81444			27525	3388	15843	16296	21973	21973					0.015208168803155786
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.78476420785	2	550.784764	1099.55498	1.4295	0.00078735	-0.87985	-0.00048461	0.54966	0.00030274	550.7840088033344	20.213	0.048084	20.213	20.189	20.237	0	1248	73	0.8689189	0.044181406	0.8689189	352.39743	0	17.918152						193	3	4	NaN	NaN	NaN	0.03533	1	12829	12829		53.14	32.585	1	67882			27526	1940	15844	16297	21974	21974					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.78476420785	2	550.784764	1099.55498	1.5577	0.00085798	-0.1816	-0.00010002	1.3761	0.00075796	550.7849158558209	20.237	0.19254	20.222	20.198	20.391	-0.014143	1248	70	0.8689189	0.042342782	0.86739945	352.3974	0	17.172485						310	9	4	NaN	NaN	NaN	0.070055	1	12498	12498		40.154	12.365	1	82435			27527	1940	15844	16297	21975	21975					0.009180193778092871
TYLDHNNFW	9	Unmodified	_TYLDHNNFW_					0	0	0		nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB	nc|ENSG00000069535|P27338-2|MAOB	nc|ENSG00000069535|P27338-2|MAOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2698126354001	2	605.269813	1208.52507	0.89993	0.0005447	-0.66596	-0.00040309	0.23397	0.00014161	605.2684778230603	24.405	0.12067	24.393	24.32	24.441	-0.012747	1191	55	0.90387505	0.033075213	0.9023556	366.16476	0	13.398987						126	6	2	NaN	NaN	NaN	0.084037	1	16013	16013		38.131	16.296	1	19653			27528	744	15845	16298	21976	21976					-0.07084919567523684
TYLDIFRDF	9	Unmodified	_TYLDIFRDF_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.2980387586	2	595.298039	1188.58152	0.36089	0.00021484	0.68682	0.00040886	1.0477	0.0006237	595.297809334232	32.103	0.16889	32.099	32.051	32.22	-0.0037575	1161	46	0.9222442	0.027537405	0.92072475	373.677	0	11.157654						171	8	3	NaN	NaN	NaN	0.1507	1	15497	15497		28.495	15.032	1	23818			27529	801	15846	16299	21977	21977					-0.005222917308628894
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.81025067685	2	523.810251	1045.60595	1.2017	0.00062946	-1.2263	-0.00064235	-0.024602	-1.2887E-05	523.8105215262372	36.76	0.1202	36.76	36.712	36.832	0	1260	46	0.8615505	0.027638733	0.8615505	349.63217	0	11.216278						124	6	3	NaN	NaN	NaN	0.02781	1	10462	10462		61.977	30.416	1	12855			27530	4717	15847	16300	21978	21978					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.6132248871	1	1046.61322	1045.60595	1.7989	0.0018827	-0.73875	-0.00077319	1.0601	0.0011095	1046.61202236035	36.76	0.14429	36.76	36.712	36.856	0	75	70	1.5741152	0.0406214	1.5741152	319.40564	0	8.242554						237	7	3	NaN	NaN	NaN	0.0081087	1	10463	10463		96.245	49.205	1	34508			27531	4717	15847	16300	21979	21979					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.81025067685	2	523.810251	1045.60595	1.3697	0.00071744	-1.9471	-0.0010199	-0.57744	-0.00030247	524.3111788040912	36.758	0.072193	36.759	36.735	36.807	0.0016747	1257	46	0.86339295	0.027638733	0.8618735	350.37985	0	11.216278						77	4	2	NaN	NaN	NaN	0.20577	1	10252	10252		24.961	9.7856	1	7929.1			27532	4717	15847	16300	21980	21980					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.6132248871	1	1046.61322	1045.60595	1.3877	0.0014524	0.30807	0.00032243	1.6958	0.0017749	1046.613457840901	36.758	0.12035	36.759	36.711	36.832	0.0016747	72	73	1.5758814	0.0423944	1.5743619	319.764	0	8.602295						232	6	3	NaN	NaN	NaN	0.0055068	1	10254	10254		101.55	64.968	1	29255			27533	4717	15847	16300	21981	21981					0.08496968422650752
TYLDKIKKF	9	Unmodified	_TYLDKIKKF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.89725835353335	3	385.897258	1154.66995	1.9086	0.00073652	-2.9758	-0.0011483	-1.0672	-0.00041183	385.8962911752262	18.101	0.095898	18.101	18.053	18.149	0	1473	37	0.7302302	0.022280514	0.7302302	443.95947	0	13.545929						104	5	3	NaN	NaN	NaN	0.23499	1	14984	14984		23.086	16.836	1	14140			27534	594	15848	16301	21982	21982					0.09879748579601255
TYLDKLKIS	9	Unmodified	_TYLDKLKIS_					0	0	0		nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND	nc|ENSG00000008382|Q8N594-2|MPND	nc|ENSG00000008382|Q8N594-2|MPND	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.8186070252001	2	540.818607	1079.62266	2.2316	0.0012069	-3.4038	-0.0018409	-1.1723	-0.00063398	540.8165960679	18.364	0.048092	18.364	18.34	18.388	0	1215	34	0.8891654	0.020233393	0.8891654	360.69095	0	8.207703						71	3	3	NaN	NaN	NaN	0.42817	1	11979	11979		12.57	0	1	7691.5			27535	374	15849	16302	21983	21983					0.08603469308627609
TYLDKLKIS	9	Unmodified	_TYLDKLKIS_					0	0	0		nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND	nc|ENSG00000008382|Q8N594-2|MPND	nc|ENSG00000008382|Q8N594-2|MPND	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.8186070252001	2	540.818607	1079.62266	2.1596	0.001168	-1.4872	-0.00080431	0.67241	0.00036365	540.8166161464076	18.41	0.07205	18.396	18.372	18.444	-0.013948	1212	34	0.8910048	0.020233393	0.88948536	361.4371	0	8.207703						67	4	2	NaN	NaN	NaN	0.17328	1	11667	11667		27.046	0	1	7035.3			27536	374	15849	16302	21984	21984					0.08603469308627609
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5564382897	1	1081.55644	1080.54916	0.86286	0.00093324	-1.7261	-0.0018669	-0.86324	-0.00093364	1081.5561819636166	35.603	0.19294	35.603	35.578	35.771	0	72	100	1.5758814	0.058313847	1.5758814	319.62933	0	11.827545						281	9	2	NaN	NaN	NaN	0.024359	1	12007	12007		87.021	47.562	1	49576			27537	1737	15850	16303	21985	21985					0.012109208661513549
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2818573781501	2	541.281857	1080.54916	1.104	0.00059755	-1.8137	-0.00098172	-0.70973	-0.00038416	541.2802906321697	35.627	0.21703	35.627	35.578	35.795	0	1263	46	0.85970795	0.027635753	0.85970795	348.73773	0	11.210358						274	10	4	NaN	NaN	NaN	0.064504	1	12008	12008		55.494	26.827	1	52046			27538	1737	15850	16303	21986	21986					0.012109208661513549
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5564382897	1	1081.55644	1080.54916	1.048	0.0011334	-2.332	-0.0025222	-1.2841	-0.0013888	1081.5566321483193	35.601	0.1929	35.602	35.577	35.77	0.00053024	72	88	1.5758814	0.051234603	1.5743619	319.62933	0	10.391724						384	9	3	NaN	NaN	NaN	0.010878	1	11692	11692		116.74	77.277	1	51487			27539	1737	15850	16303	21987	21987					0.012109208661513549
TYLDLLGTW	9	Unmodified	_TYLDLLGTW_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2818573781501	2	541.281857	1080.54916	0.72472	0.00039228	-1.0624	-0.00057507	-0.33771	-0.0001828	541.2811488377315	35.601	0.1929	35.602	35.577	35.77	0.00053024	1260	46	0.8615505	0.027635753	0.8600311	349.48517	0	11.210358						170	9	2	NaN	NaN	NaN	0.0042638	1	11694	11694		136.23	103.78	1	51364			27540	1737	15850	16303	21988	21988					0.012109208661513549
TYLDLLGTWVF	11	Unmodified	_TYLDLLGTWVF_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.35027129435	2	664.350271	1326.68599	1.3679	0.00090877	-3.3951	-0.0022555	-2.0272	-0.0013468	664.849253072012	43.441	0.071896	43.441	43.393	43.465	0	1080	31	0.9717421	0.018307865	0.9717421	393.26202	0	7.409149						64	4	3	NaN	NaN	NaN	0.4078	1	19209	19209		21.771	12.852	1	3975.5			27541	1737	15851	16304	21989	21989					0.03571410025847399
TYLDLLGTWVF	11	Unmodified	_TYLDLLGTWVF_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC;ENST00000533865.5_1_11:88068232-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.35027129435	2	664.350271	1326.68599	1.1976	0.00079564	-4.2331	-0.0028122	-3.0354	-0.0020166	664.8492519311787	43.415	0.11987	43.426	43.378	43.498	0.010994	1077	37	0.9735726	0.021967113	0.9720532	394.0028	0	8.890045						91	6	3	NaN	NaN	NaN	0.006775	1	18347	18347		72.428	49.311	1	5583.7			27542	1737	15851	16304	21990	21990					0.03571410025847399
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1027.5094880971	1	1027.50949	1026.50221	2.2433	0.002305	0.6457	0.00066346	2.889	0.0029684	1027.5105902200607	28.122	0.12068	28.122	28.05	28.17	0	222	139	1.4873441	0.081644416	1.4873441	301.87195	0	16.570587						260	6	2	NaN	NaN	NaN	0.023828	1	9626	9626		67.154	33.456	1	54208			27543	4583	15852	16305	21991	21991					-0.009979386849863658
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2583822818501	2	514.258382	1026.50221	2.1973	0.00113	0.7282	0.00037448	2.9255	0.0015045	514.2575107849484	28.122	0.16892	28.122	28.074	28.243	0	1263	103	0.85970795	0.06269872	0.85970795	348.96878	0	25.450378						280	8	4	NaN	NaN	NaN	0.074859	1	9627	9627		39.459	12.727	1	41866			27544	4583	15852	16305	21992	21992					-0.009979386849863658
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2583822818501	2	514.258382	1026.50221	0.96285	0.00049515	2.887	0.0014847	3.8498	0.0019798	514.762490434424	28.145	0.21721	28.137	28.088	28.305	-0.0089798	1263	88	0.85970795	0.05347544	0.8581885	348.96878	0	21.706512						325	10	3	NaN	NaN	NaN	0.29681	1	9436	9436		19.118	9.3723	1	49678			27545	4583	15852	16305	21993	21993					-0.009979386849863658
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.86133750715	2	641.861338	1281.70812	1.62	0.0010398	-5.3189	-0.003414	-3.6989	-0.0023742	641.8599439898036	24.116	0.072437	24.116	24.092	24.164	0	1101	58	0.95892316	0.034820557	0.95892316	388.21457	0	14.096924						105	4	3	NaN	NaN	NaN	0.70361	1	18457	18457		9.6116	6.0322	1	10279			27546	2535	15853	16306	21994	21994					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.24331716029997	3	428.243317	1281.70812	1.139	0.00048775	-2.9915	-0.0012811	-1.8525	-0.00079333	428.24189222131133	24.14	0.0966	24.14	24.116	24.213	0	1386	43	0.78399014	0.025912344	0.78399014	476.0869	0	15.735535						108	5	3	NaN	NaN	NaN	0.12997	1	18458	18458		41.839	27.89	1	13244			27547	2535	15853	16306	21995	21995					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.24331716029997	3	428.243317	1281.70812	1.1228	0.00048085	-3.9669	-0.0016988	-2.8441	-0.001218	428.24169420508593	24.164	0.096474	24.151	24.127	24.224	-0.012749	1386	55	0.78399014	0.033326685	0.7824707	476.0869	0	20.237976						81	5	2	NaN	NaN	NaN	0.31897	1	17633	17633		26.96	19.156	1	12002			27548	2535	15853	16306	21996	21996					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.86133750715	2	641.861338	1281.70812	2.2019	0.0014133	-2.8347	-0.0018195	-0.6328	-0.00040617	641.860230286707	24.164	0.048227	24.151	24.151	24.199	-0.012749	1098	37	0.960755	0.02198124	0.9592356	388.95618	0	8.898987						74	3	3	NaN	NaN	NaN	0.22283	1	17634	17634		40.957	26.103	1	6731.4			27549	2535	15853	16306	21997	21997					0.0785363449426768
TYLEAHRIVKM	11	Unmodified	_TYLEAHRIVKM_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.25170679129997	3	454.251707	1359.73329	1.8911	0.00085903	-0.8423	-0.00038262	1.0488	0.00047641	454.25160708170506	17.258	0.16796	17.244	17.196	17.364	-0.013567	1449	25	0.74507743	0.014840782	0.743558	452.1802	0	9.006714						72	8	2	NaN	NaN	NaN	0.56282	1	18781	18781		15.475	10.931	1	4730.9			27550	4489	15854	16307	21998	21998					0.06781366025188618
TYLEFLKHSGH	11	Unmodified	_TYLEFLKHSGH_					0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.34076924055	2	666.340769	1330.66699	1.0791	0.00071907	5.4766	0.0036493	6.5557	0.0043684	666.3450378734058	42.003	0.095982	42.003	41.931	42.027	0	1074	34	0.9754029	0.020133197	0.9754029	394.73132	0	8.147644						110	5	3	NaN	NaN	NaN	0.29515	1	19265	19265		25.801	8.9426	1	10074	+		27551	8412	15855	16308	21999	21999					0.014878734547892236
TYLEFLKHSGH	11	Unmodified						0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.340769	1330.66699	1.0791	0.00071907	5.4766	0.0036493	6.5557	0.0043684	666.3450378734058	42.003	0.095982	42.003	41.931	42.027	0	1074	34	0.9754029	0.020133197	0.9754029	394.73132		8.147644	0.020294	-0.0010011	0.00075972	NaN	25.801	110	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10074	+		27552	8412	15855	16308							0.014878734547892236
TYLEFLKHSGH	11	Unmodified						0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	666.340769	1330.66699	1.1037	0.00073543	6.7987	0.0045302	7.9024	0.0052657	666.3457384329679	41.953	0.11995	41.962	41.914	42.034	0.0089951	1074	37	0.9754029	0.021962345	0.97388345	394.7313		8.887848	-0.020294	0.00076077	-0.00075972	NaN	25.801	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9861.1	+		27553	8412	15855	16308							0.014878734547892236
TYLEGECLELL	11	Unmodified	_TYLEGECLELL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8154040217502	2	641.815404	1281.61626	1.09	0.00069955	-1.7408	-0.0011172	-0.65079	-0.00041769	641.8117833422142	33.431	0.26547	33.431	33.262	33.528	0	1104	43	0.9570911	0.025653124	0.9570911	387.47314	0	10.385498						253	12	4	NaN	NaN	NaN	0.1667	1	18449	18449		33.425	19	1	20719			27554	5902	15856	16309	22000	22000					-0.013288367050563465
TYLEGECLELL	11	Unmodified	_TYLEGECLELL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8154040217502	2	641.815404	1281.61626	1.5262	0.00097957	-6.9136	-0.0044373	-5.3874	-0.0034577	641.8111504895179	33.43	0.048267	33.428	33.404	33.452	-0.0018501	1104	46	0.9570911	0.02748102	0.95557165	387.47318	0	11.125549						53	3	2	NaN	NaN	NaN	0.37016	1	17628	17628		23.118	13.372	1	5851.4			27555	5902	15856	16309	22001	22001					-0.013288367050563465
TYLEGECLELL	11	Unmodified	_TYLEGECLELL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.8154040217502	2	641.815404	1281.61626	1.6056	0.0010305	-6.2605	-0.0040181	-4.6548	-0.0029875	641.81125538144	33.358	0.048256	33.355	33.331	33.379	-0.0024796	1104	43	0.9570911	0.025650322	0.95557165	387.47318	0	10.38443						56	3	2	NaN	NaN	NaN	0.2154	1	17629	17629		28.896	14.471	1	5602.6			27556	5902	15856	16309	22002	22002					-0.013288367050563465
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.2217419863667	3	360.221742	1077.6434	2.0331	0.00073237	-2.4805	-0.00089351	-0.44736	-0.00016115	360.2208646640799	19.78	0.24036	19.78	19.732	19.972	0	1437	58	0.7524962	0.035233438	0.7524962	457.88162	0	21.439026						277	11	4	NaN	NaN	NaN	0.27608	1	11882	11882		13.949	2.2099	1	92270			27557	5510	15857	16310	22003	22003					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8289747462501	2	539.828975	1077.6434	2.3567	0.0012722	-1.6911	-0.0009129	0.66561	0.00035932	539.8279326091854	19.78	0.26439	19.78	19.732	19.997	0	1236	61	0.876284	0.036813855	0.876284	355.47385	0	14.933929						465	12	5	NaN	NaN	NaN	0.00068417	1	11884	11884		114.98	42.556	1	385210			27558	5510	15857	16310	22004	22004					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8289747462501	2	539.828975	1077.6434	1.9046	0.0010281	-1.0617	-0.00057312	0.84291	0.00045503	539.8282879719828	19.876	0.31289	19.861	19.789	20.102	-0.014141	1236	58	0.876284	0.034975052	0.8747646	355.47385	0	14.187988						531	14	5	NaN	NaN	NaN	0.0098181	1	11582	11582		92.758	42.443	1	383500			27559	5510	15857	16310	22005	22005					0.10768059688280118
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000527389.2_1_11:108198407-108199966:+|nuORF;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2871397213	2	526.28714	1050.55973	1.5362	0.00080848	-3.9346	-0.0020707	-2.3984	-0.0012622	526.2843595669063	20.021	0.19225	20.021	19.948	20.141	0	1275	46	0.85233563	0.027656734	0.85233563	345.87143	0	11.22287						102	9	2	NaN	NaN	NaN	0.34922	1	10655	10655		15.822	2.3589	1	12729			27560	3672	15858	16311	22006	22006					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000527389.2_1_11:108198407-108199966:+|nuORF;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2871397213	2	526.28714	1050.55973	1.313	0.00069101	-2.7362	-0.00144	-1.4232	-0.00074902	526.2856984975004	20.068	0.096273	20.054	20.006	20.102	-0.014141	1278	55	0.85049206	0.033186257	0.8489726	345.1233	0	13.466736						123	5	3	NaN	NaN	NaN	0.48181	1	10436	10436		10.36	1.3982	1	13914			27561	3672	15858	16311	22007	22007					0.03646903520575506
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENSG00000103351|ENST00000576634|CLUAP1	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3058637907002	2	578.305864	1154.59717	1.9956	0.0011541	-2.0181	-0.0011671	-0.022407	-1.2958E-05	578.3043014289655	22.645	0.21715	22.645	22.549	22.766	0	1155	73	0.92591566	0.044071734	0.92591566	375.2913	0	17.863129						353	10	3	NaN	NaN	NaN	0.013959	1	14976	14976		80.901	42.77	1	55585			27562	1433	15859	16312	22008	22008					0.026059947862222543
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENSG00000103351|ENST00000576634|CLUAP1	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENST00000572632.1_1_16:3569992-3580585:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.3058637907002	2	578.305864	1154.59717	1.389	0.00080328	-1.325	-0.00076626	0.064003	3.7013E-05	578.3045832735755	22.669	0.28928	22.655	22.583	22.872	-0.01354	1152	82	0.92775106	0.049583375	0.9262317	376.03522	0	20.097107						399	13	3	NaN	NaN	NaN	0.14787	1	14480	14480		28.896	5.778	1	59536			27563	1433	15859	16312	22009	22009					0.026059947862222543
TYLEVINTV	9	Unmodified	_TYLEVINTV_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.567002976	1	1051.567	1050.55973	1.6208	0.0017043	-2.0503	-0.002156	-0.42949	-0.00045164	1051.564380877815	27.735	0.096521	27.726	27.702	27.798	-0.009552	129	40	1.5422925	0.0230062	1.540773	312.92923	0	4.667938						85	5	3	NaN	NaN	NaN	0.44082	1	10437	10437		12.049	4.5083	1	5634.4			27564	3448	15860	16313	22010	22010					0.03646903520575506
TYLEVINTV	9	Unmodified						0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1051.567	1050.55973	2.1812	0.0022936	0.39834	0.00041888	2.5795	0.0027125	1051.567169166904	27.712	0.048288	27.712	27.712	27.76	0	132	40	1.5405227	0.0230062	1.5405227	312.57016		4.667938	-0.006893	0.0010233	-0.00012514	NaN	12.049	76	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5596.5			27565	3448	15860	16313							0.03646903520575506
TYLFPIQVKTF	11	Unmodified	_TYLFPIQVKTF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.88173859825	2	678.881739	1355.74892	1.6901	0.0011474	-5.8869	-0.0039965	-4.1967	-0.0028491	678.8789886963971	29.98	0.072403	29.98	29.956	30.029	0	1068	37	0.97906286	0.021955252	0.97906286	396.13715	0	8.88327						66	4	2	NaN	NaN	NaN	0.6678	1	19621	19621		9.5705	3.1405	1	8687.3			27566	1637	15861	16314	22011	22011					0.08527975813876765
TYLFPIQVKTF	11	Unmodified	_TYLFPIQVKTF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF;DDX50|p.S311Yfs*7|1|0.06|ENSG00000107625|chr10:68913564-68913565|-/ATGATTA|frameshift_variant	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.88173859825	2	678.881739	1355.74892	0.98271	0.00066714	-5.7009	-0.0038702	-4.7181	-0.0032031	679.3776197916969	29.979	0.12068	29.973	29.949	30.07	-0.0064087	1065	46	0.9808926	0.027448475	0.97937316	396.87747	0	11.1058655						126	6	3	NaN	NaN	NaN	0.20668	1	18730	18730		29.706	14.852	1	11468			27567	1637	15861	16314	22012	22012					0.08527975813876765
TYLGVAASL	9	Unmodified	_TYLGVAASL_					0	0	0		ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4931097514001	1	894.49311	893.485833	1.6844	0.0015067	-1.3859	-0.0012396	0.29855	0.00026706	894.4911942539916	26.65	0.12074	26.65	26.65	26.77	0	330	61	1.4233059	0.035660148	1.4233059	289.4442	0	7.2518616						106	6	2	NaN	NaN	NaN	0.10956	1	5979	5979		34.439	6.65	1	7753.1			27568	5699	15862	16315	22013	22013					0.03482980148908155
TYLGVAASL	9	Unmodified						0	0	0		ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	ENSG00000197417|ENST00000225519|SHPK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	894.49311	893.485833	1.4532	0.0012999	0.95255	0.00085205	2.4057	0.0021519	894.4921273575658	26.673	0.048254	26.663	26.639	26.687	-0.010643	327	46	1.425088	0.026732326	1.4235686	289.8066		5.4362793	0.0065785	0.0012496	0.00013136	NaN	34.439	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5833.6			27569	5699	15862	16315							0.03482980148908155
TYLIQHQRI	9	Unmodified	_TYLIQHQRI_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3327472432001	2	586.332747	1170.65094	2.1139	0.0012395	-3.2668	-0.0019154	-1.1529	-0.00067596	586.3305249766738	16.134	0.095959	16.134	16.11	16.206	0	1134	34	0.9387595	0.020176709	0.9387595	380.43558	0	8.176666						44	5	2	NaN	NaN	NaN	0.23112	1	15513	15513		23.334	12.729	1	2949.8			27570	1142	15863	16316	22014	22014					0.07244212008549766
TYLISLTLV	9	Unmodified	_TYLISLTLV_					0	0	0		nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	nc|ENSG00000135439|Q99490|AGAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.6132248871002	1	1022.61322	1021.60595	1.6551	0.0016925	-5.1112	-0.0052268	-3.4561	-0.0035343	1022.608869735397	34.974	0.28955	34.974	34.901	35.191	-4.5776E-05	99	103	1.5599792	0.060109615	1.5584598	316.63412	0	12.200653						815	13	5	NaN	NaN	NaN	0.056143	1	9256	9256		44.302	2.8423	1	157240			27571	2942	15864	16317	22015	22015					0.09600968422671485
TYLKAVKLF	9	Unmodified	_TYLKAVKLF_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.83406012415	2	541.83406	1081.65357	1.6967	0.00091934	-2.7071	-0.0014668	-1.0104	-0.00054748	541.8323377225216	22.573	0.072405	22.573	22.573	22.645	0	1167	31	0.91857195	0.018363178	0.91857195	372.61096	0	7.448883						74	4	3	NaN	NaN	NaN	0.33513	1	12068	12068		18.233	4.1919	1	9207.1			27572	3016	15865	16318	22016	22016					0.11600667413495103
TYLLLSLGG	9	Unmodified	_TYLLLSLGG_					0	0	0		ENST00000469346.1_1_X:46940570-46944097:+|nuORF	ENST00000469346.1_1_X:46940570-46944097:+|nuORF	ENST00000469346.1_1_X:46940570-46944097:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5400599440003	1	936.54006	935.532783	1.3723	0.0012852	-0.28822	-0.00026993	1.0841	0.0010153	936.5402272126745	29.28	0.14477	29.28	29.208	29.353	0	258	76	1.4660252	0.04444039	1.4660252	297.92834	0	9.03125						202	7	2	NaN	NaN	NaN	0.032764	1	6739	6739		55.494	0.080568	1	25472			27573	7138	15866	16319	22017	22017					0.06243839700061926
TYLLPHGSHS	10	Unmodified	_TYLLPHGSHS_					0	0	0			REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF	REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.28018035645	2	556.28018	1110.54581	1.0302	0.00057309	-8.5639	-0.0047639	-7.5337	-0.0041908	556.2754798716941	20.718	0.14469	20.704	20.608	20.752	-0.014086	1248	79	0.8689189	0.047873557	0.86739945	352.35428	0	19.413147						254	7	4	NaN	NaN	NaN	0.68669	1	12916	12916		8.962	1.3717	1	25686	+		27574	12749	15867	16320	22018	22018					-0.00504329187856456
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3265992328	2	564.326599	1126.63865	1.7224	0.00097199	-2.8183	-0.0015905	-1.0959	-0.00061846	564.324487424694	27.157	0.12064	27.157	27.109	27.229	0	1173	61	0.91489893	0.036738336	0.91489893	370.9346	0	14.895111						198	6	4	NaN	NaN	NaN	0.059222	1	13977	13977		42.995	15.699	1	62461			27575	6074	15868	16321	22019	22019					0.08039175545513899
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3265992328	2	564.326599	1126.63865	1.1302	0.00063779	-2.0887	-0.0011787	-0.95853	-0.00054093	564.3255013946576	27.18	0.16893	27.17	27.146	27.315	-0.010124	1173	49	0.91489893	0.029387534	0.9133795	370.9346	0	11.914825						243	8	4	NaN	NaN	NaN	0.010878	1	13531	13531		90.252	39.937	1	65445			27576	6074	15868	16321	22020	22020					0.08039175545513899
TYLMLISNF	9	Unmodified	_TYLMLISNF_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2860854763001	2	551.286085	1100.55762	0.41826	0.00023058	-0.847	-0.00046694	-0.42874	-0.00023636	551.286310283196	35.144	0.26545	35.144	35.072	35.337	0	1236	79	0.876284	0.047883928	0.876284	355.3804	0	19.419495						311	12	3	NaN	NaN	NaN	0.31737	1	12869	12869		17.799	7.194	1	33644			27577	13965	15869	16322	22021	22021					0.011361515111047993
TYLMLISNF	9	Unmodified	_TYLMLISNF_					0	0	0		tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	tr|U7T2T6|U7T2T6_FUSNUMATEfamilymultidrugresistanceproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00453PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.2860854763001	2	551.286085	1100.55762	0.94436	0.00052061	-2.5025	-0.0013796	-1.5582	-0.00085899	551.2845946069633	35.143	0.1207	35.143	35.119	35.239	-4.5776E-05	1230	73	0.8799654	0.044190943	0.878446	356.8734	0	17.921814						198	6	2	NaN	NaN	NaN	0.11656	1	12533	12533		33.425	4.7588	1	29810			27578	13965	15869	16322	22022	22022					0.011361515111047993
TYLNFFHISTF	11	Unmodified	_TYLNFFHISTF_					0	0	0		ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.34552026745	2	695.34552	1388.67649	0.93547	0.00065048	1.1667	0.00081123	2.1021	0.0014617	695.3481263570714	32.032	0.096539	32.032	32.008	32.104	0	1077	67	0.9735726	0.040255606	0.9735726	393.82144	0	16.283844						126	5	3	NaN	NaN	NaN	0.36851	1	19972	19972		23.177	10.607	1	12851			27579	6607	15870	16323	22023	22023					-0.0023035825970509904
TYLNFFHISTF	11	Unmodified	_TYLNFFHISTF_					0	0	0		ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	ENST00000361384.6_1_10:115613538-115613757:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.34552026745	2	695.34552	1388.67649	0.42275	0.00029396	8.0456	0.0055945	8.4684	0.0058884	695.3526413847707	32.055	0.16892	32.051	31.979	32.148	-0.0037613	1080	76	0.9717421	0.045737565	0.97022265	393.08096	0	18.501404						195	8	2	NaN	NaN	NaN	0.26275	1	19039	19039		26.96	16.6	1	25050			27580	6607	15870	16323	22024	22024					-0.0023035825970509904
TYLNFPVLI	9	Unmodified	_TYLNFPVLI_					0	0	0		ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.31041785235	2	540.310418	1078.60628	1.3932	0.00075275	-0.35325	-0.00019086	1.0399	0.00056188	540.3110478536587	36.613	0.096363	36.615	36.567	36.663	0.0016785	1230	46	0.8799654	0.027602911	0.878446	356.9632	0	11.197296						99	5	2	NaN	NaN	NaN	0.12328	1	11624	11624		32.453	14.654	1	9807			27581	7356	15871	16324	22025	22025					0.07012388142516102
TYLNFPVLI	9	Unmodified						0	0	0		ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.310418	1078.60628	1.4694	0.00079391	-1.7	-0.00091853	-0.23063	-0.00012461	540.309667361421	36.615	0.12051	36.615	36.567	36.688	0	1227	46	0.88180584	0.027608931	0.88180584	357.70978		11.199707	0.00016104	-0.00048678	0.0016799	NaN	32.453	143	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12024			27582	7356	15871	16324							0.07012388142516102
TYLNVYLQW	9	Unmodified	_TYLNVYLQW_					0	0	0		nc|ENSG00000140829|Q92620-2|DHX38;ENSG00000140829|ENST00000268482|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.30840647965	2	600.308406	1198.60226	0.81317	0.00048815	-6.9237	-0.0041564	-6.1105	-0.0036682	600.3037210154434	32.9	0.09655	32.9	32.876	32.973	0	1167	70	0.91857195	0.04221946	0.91857195	372.15338	0	17.10495						122	5	2	NaN	NaN	NaN	0.39244	1	16421	16421		14.042	6.454	1	14311			27583	3290	15872	16325	22026	22026					0.010902986487963062
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.3031241365001	2	561.303124	1120.5917	2.0739	0.0011641	-0.31463	-0.0001766	1.7593	0.0009875	561.3042517852383	26.336	0.14481	26.336	26.312	26.456	0	1161	106	0.9222442	0.064323425	0.9222442	373.93704	0	26.080841						259	7	4	NaN	NaN	NaN	0.056143	1	13711	13711		44.302	19.341	1	40478			27584	5575	15873	16326	22027	22027					0.036223159943801875
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	ENSG00000188994|ENST00000369577|ZNF292	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.3031241365001	2	561.303124	1120.5917	1.5269	0.00085708	-0.92031	-0.00051657	0.60663	0.0003405	561.3032369791791	26.384	0.096529	26.373	26.324	26.421	-0.011137	1161	64	0.9222442	0.03856486	0.92072475	373.93704	0	15.636658						221	5	4	NaN	NaN	NaN	0.049695	1	13307	13307		47.04	17.442	1	35799			27585	5575	15873	16326	22028	22028					0.036223159943801875
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3371639191	2	618.337164	1234.65977	2.0131	0.0012448	-1.7179	-0.0010622	0.29519	0.00018253	618.3359487618702	26.239	0.21721	26.239	26.191	26.408	0	1152	157	0.92775106	0.09539628	0.92775106	375.74728	0	38.636322						549	10	4	NaN	NaN	NaN	0.043578	1	17400	17400		51.467	27.067	1	233250			27586	531	15874	16327	22029	22029					0.05183140854364865
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.3371639191	2	618.337164	1234.65977	1.6147	0.00099842	-1.9837	-0.0012266	-0.369	-0.00022817	618.3358597468772	26.263	0.14476	26.252	26.204	26.349	-0.011137	1152	148	0.92775106	0.08986837	0.9262317	375.74728	0	36.39749						589	7	5	NaN	NaN	NaN	0.0015715	1	16671	16671		77.489	51.374	1	231750			27587	531	15874	16327	22030	22030					0.05183140854364865
TYLPAPEGLKF	11	Unmodified						0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.337164	1234.65977	2.2457	0.0013886	-6.1311	-0.0037911	-3.8854	-0.0024025	618.3324035012807	26.432	0.02413	26.421	26.397	26.421	-0.011137	1146	28	0.93142134	0.016515315	0.9299019	377.2338		6.6888733	0.090834	-0.0051768	0.0010754	NaN	51.467	29	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2021.3			27588	531	15874	16327							0.05183140854364865
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.29750744235	2	549.297507	1096.58046	1.4043	0.00077136	-1.2097	-0.00066448	0.19457	0.00010688	549.296482727155	29.498	0.24138	29.498	29.449	29.691	0	1182	103	0.9093879	0.06252271	0.9093879	368.82233	0	25.357483						516	11	4	NaN	NaN	NaN	0.070055	1	12708	12708		40.154	7.701	1	123480			27589	2996	15875	16328	22031	22031					0.03603493900232024
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.5877384181	1	1097.58774	1096.58046	1.5383	0.0016884	-1.1293	-0.0012395	0.40901	0.00044892	1097.5859660434046	29.497	0.096497	29.49	29.466	29.562	-0.0070648	66	61	1.579413	0.03531742	1.5778936	320.2866	0	7.161957						142	5	3	NaN	NaN	NaN	0.052553	1	12373	12373		45.827	13.374	1	14700			27590	2996	15875	16328	22032	22032					0.03603493900232024
TYLPQSYLI	9	Unmodified						0	0	0		ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.297507	1096.58046	1.3263	0.00072851	-0.25002	-0.00013734	1.0762	0.00059117	549.2968729295051	29.497	0.26542	29.49	29.417	29.683	-0.0070648	1179	106	0.9112251	0.064358115	0.90970564	369.56744		26.101898	-0.003948	0.00053575	0.00015889	NaN	40.154	720	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146020			27591	2996	15875	16328							0.03603493900232024
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.30533247445	2	556.305332	1110.59611	1.498	0.00083337	-1.8887	-0.0010507	-0.39061	-0.0002173	556.3042388009168	29.691	0.19305	29.691	29.618	29.811	0	1230	103	0.8799654	0.06254977	0.8799654	356.83353	0	25.364471						431	9	3	NaN	NaN	NaN	0.052553	1	13313	13313		45.827	5.6728	1	81873			27592	2974	15876	16329	22033	22033					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.6033884822998	1	1111.60339	1110.59611	1.9689	0.0021887	1.2622	0.0014031	3.2312	0.0035918	1111.6061739446357	29.691	0.048279	29.691	29.667	29.715	0	66	43	1.579413	0.024719596	1.579413	320.23633	0	5.0120544						54	3	2	NaN	NaN	NaN	0.04743	1	13315	13315		48.002	20.213	1	3715.6			27593	2974	15876	16329	22034	22034					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.30533247445	2	556.305332	1110.59611	1.1851	0.00065928	-1.5207	-0.00084598	-0.33561	-0.0001867	556.3040889194854	29.69	0.19304	29.683	29.635	29.828	-0.0070648	1227	91	0.88180584	0.05516708	0.8802864	357.5798	0	22.370758						484	9	4	NaN	NaN	NaN	0.10945	1	12938	12938		34.454	8.339	1	86614			27594	2974	15876	16329	22035	22035					0.045237804172757023
TYLPQVSHYRF	11	Unmodified	_TYLPQVSHYRF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.91033803779993	3	470.910338	1409.70918	1.1622	0.00054728	-1.2323	-0.0005803	-0.070117	-3.3019E-05	470.9095425185467	21.344	0.14437	21.344	21.296	21.44	0	1368	52	0.7950918	0.031449556	0.7950918	482.3615	0	19.07965						232	7	4	NaN	NaN	NaN	0.026493	1	20145	20145		58.552	42.766	1	30863			27595	3461	15877	16330	22036	22036					0.02071848863147352
TYLPQVSHYRF	11	Unmodified	_TYLPQVSHYRF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.91033803779993	3	470.910338	1409.70918	0.32001	0.0001507	0.044347	2.0883E-05	0.36436	0.00017158	470.91052879223815	21.44	0.16856	21.426	21.354	21.523	-0.014006	1368	58	0.7950918	0.035149574	0.79357237	482.3615	0	21.32431						290	8	4	NaN	NaN	NaN	0.22256	1	19193	19193		28.398	22.041	1	32718			27596	3461	15877	16330	22037	22037					0.02071848863147352
TYLPREILNLI	11	Unmodified	_TYLPREILNLI_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.8979199787002	2	672.89792	1343.78129	1.2491	0.0008405	-2.4809	-0.0016694	-1.2318	-0.00082889	672.8963379491296	32.514	0.19305	32.514	32.49	32.683	0	1065	79	0.9808926	0.047590137	0.9808926	396.91312	0	19.25711						383	9	4	NaN	NaN	NaN	0.012576	1	19473	19473		66.786	37.891	1	70742			27597	4228	15878	16331	22038	22038					0.12314763216909341
TYLPREILNLI	11	Unmodified	_TYLPREILNLI_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.8979199787002	2	672.89792	1343.78129	0.79269	0.0005334	-3.1461	-0.002117	-2.3534	-0.0015836	672.8961273342669	32.61	0.21712	32.607	32.534	32.751	-0.0031052	1062	76	0.9827221	0.045752406	0.98120266	397.6534	0	18.513458						473	10	4	NaN	NaN	NaN	0.10311	1	18605	18605		39.34	14.94	1	75324			27598	4228	15878	16331	22039	22039					0.12314763216909341
TYLPTNASLSF	11	Unmodified	_TYLPTNASLSF_					0	0	0		ENST00000584908.5_1_17:37856482-37868536:+|nuORF;nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	ENST00000584908.5_1_17:37856482-37868536:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.3086034449	2	607.308603	1212.60265	0.6832	0.00041491	-2.4103	-0.0014638	-1.7271	-0.0010489	607.30785080418	28.459	0.16891	28.451	28.378	28.547	-0.0083504	1182	91	0.9093879	0.05508375	0.90786844	368.38406	0	22.313904						227	8	3	NaN	NaN	NaN	0.47586	1	16122	16122		19.336	5.2948	1	31898			27599	3341	15879	16332	22040	22040					0.004856735779867449
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.78677558055	2	502.786776	1003.559	1.6216	0.00081534	-2.8248	-0.0014203	-1.2031	-0.00060492	502.7854647918209	29.691	0.12066	29.691	29.667	29.787	0	1281	67	0.84864825	0.040574074	0.84864825	344.58368	0	16.47464						165	6	2	NaN	NaN	NaN	0.074859	1	8741	8741		39.459	9.8604	1	28515			27600	885	15880	16333	22041	22041					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5662746945001	1	1004.56627	1003.559	2.2491	0.0022593	-0.46384	-0.00046596	1.7852	0.0017934	1004.566155530342	29.691	0.26548	29.691	29.642	29.908	0	144	211	1.533442	0.12414956	1.533442	311.3223	0	25.205078						830	12	5	NaN	NaN	NaN	1.096E-11	1	8745	8745		143.5	52.071	1	489890			27601	885	15880	16333	22042	22042					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.78677558055	2	502.786776	1003.559	0.93864	0.00047194	-0.81961	-0.00041209	0.11903	5.9848E-05	502.7864367752645	29.69	0.14477	29.683	29.635	29.779	-0.0070648	1278	88	0.85049206	0.05347544	0.8489726	345.3323	0	21.713074						191	7	2	NaN	NaN	NaN	0.030391	1	8567	8567		58.599	27.038	1	35894			27602	885	15880	16333	22043	22043					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5662746945001	1	1004.56627	1003.559	1.8943	0.0019029	-0.082475	-8.2852E-05	1.8118	0.0018201	1004.5664400776866	29.69	0.21716	29.683	29.635	29.852	-0.0070648	144	229	1.533442	0.13480532	1.5319226	311.3223	0	27.368439						871	10	5	NaN	NaN	NaN	1.096E-11	1	8570	8570		143.5	69.168	1	506890			27603	885	15880	16333	22044	22044					0.057361088715197184
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.57663063379994	3	398.576631	1192.70806	1.7146	0.00068341	-1.8674	-0.00074429	-0.15276	-6.0885E-05	398.57600486549285	17.453	0.28772	17.453	17.357	17.645	0	1452	49	0.74322224	0.029688	0.74322224	451.68842	0	18.042694						343	13	4	NaN	NaN	NaN	0.04743	1	16238	16238		48.002	37.798	1	86677			27604	4993	15881	16334	22045	22045					0.11941679284927886
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.57663063379994	3	398.576631	1192.70806	1.9949	0.00079514	-2.2614	-0.00090135	-0.26649	-0.00010622	398.9102555387654	18.17	0.12004	18.156	18.06	18.18	-0.01395	1452	37	0.74322224	0.022263587	0.7417028	451.68842	0	13.530548						85	6	2	NaN	NaN	NaN	0.37272	1	15620	15620		14.854	5.2424	1	11112			27605	4993	15881	16334	22046	22046					0.11941679284927886
TYLRVRSL	8	Unmodified	_TYLRVRSL_					0	0	0		ENSG00000157911|ENST00000447513|PEX10	ENSG00000157911|ENST00000447513|PEX10	ENSG00000157911|ENST00000447513|PEX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.3034584875	2	504.303458	1006.59236	1.5899	0.00080178	-5.3942	-0.0027203	-3.8043	-0.0019185	504.30087961503307	23.899	0.024105	23.899	23.875	23.899	0	1290	49	0.84311575	0.02951163	0.84311575	342.32333	0	11.982361						50	2	2	NaN	NaN	NaN	0.76406	1	8857	8857		14.042	0	1	10643			27606	3975	15882	16335	22047	22047					0.08933155434078799
TYLSHLEAL	9	Unmodified	_TYLSHLEAL_					0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.7794818647001	2	523.779482	1045.54441	1.7043	0.00089266	-3.3554	-0.0017575	-1.6512	-0.00086484	523.7771420596667	23.634	0.12049	23.621	23.596	23.717	-0.013048	1239	61	0.87444305	0.036837757	0.8729236	354.86444	0	14.949402						119	6	3	NaN	NaN	NaN	0.47587	1	10241	10241		10.605	2.9224	1	15233			27607	5484	15883	16336	22048	22048					0.023460367233838042
TYLSHLEAL	9	Unmodified						0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.779482	1045.54441	1.5666	0.00082057	-1.1642	-0.00060978	0.40245	0.00021079	523.7785948705342	23.586	0.12047	23.586	23.562	23.682	0	1239	61	0.87444305	0.036833763	0.87444305	354.86444		14.947784	-0.017444	0.00085686	0.00075972	NaN	10.605	107	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13335			27608	5484	15883	16336							0.023460367233838042
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7976746178501	2	523.797675	1045.5808	1.08	0.00056569	-0.084605	-4.4316E-05	0.99537	0.00052137	523.7960599748129	26.915	0.096512	26.915	26.867	26.964	0	1239	61	0.87444305	0.036825776	0.87444305	354.8643	0	14.94455						94	5	2	NaN	NaN	NaN	0.043119	1	10460	10460		49.833	13.246	1	14638			27609	2806	15884	16337	22049	22049					0.05982913620096042
TYLSIIHSL	9	Unmodified						0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.797675	1045.5808	1.3698	0.00071748	-2.3555	-0.0012338	-0.98576	-0.00051634	523.7966633107532	26.818	0.072412	26.808	26.783	26.856	-0.010645	1278	31	0.85049206	0.018440783	0.8489726	345.14456		7.483612	-0.053994	-0.0012589	-0.012735	NaN	49.833	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6025.9			27610	2806	15884	16337							0.05982913620096042
TYLTIKFYQLL	11	Unmodified	_TYLTIKFYQLL_					0	0	0			REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.9026710056002	2	701.902671	1401.79079	0.90751	0.00063698	-1.9335	-0.0013572	-1.026	-0.00072017	701.9015420742635	32.466	0.048252	32.466	32.442	32.49	0	1008	40	1.0156195	0.023740053	1.0156195	410.792	0	9.602234						50	3	2	NaN	NaN	NaN	0.44296	1	20081	20081		20.513	7.9436	1	4449.7	+		27611	11882	15885	16338	22050	22050					0.10596531502437756
TYLVDMQRF	9	Oxidation (M)	_TYLVDM(Oxidation (M))QRF_		TYLVDM(1)QRF		TYLVDM(48)QRF	0	0	1		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7895236222499	2	594.789524	1187.56449	0.83635	0.00049745	0.055273	3.2876E-05	0.89163	0.00053033	594.7887720901838	20.549	0.096287	20.535	20.511	20.608	-0.014141	1188	52	0.90571284	0.031232655	0.9041934	366.9824	0	12.65506						104	5	2	NaN	NaN	NaN	0.04743	1	15467	15467		48.002	30.033	1	16858			27612	5191	15886	16339	22051	22051		540			-0.021785356083455554
TYLYACLV	8	Unmodified	_TYLYACLV_					0	0	0		nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.2411466564	2	473.241147	944.46774	0.61818	0.00029255	-3.6823	-0.0017426	-3.0642	-0.0014501	473.23948441767834	20.261	0.096218	20.246	20.198	20.295	-0.014141	1374	40	0.791392	0.0240497	0.7898726	321.60724	0	9.773376						99	5	2	NaN	NaN	NaN	0.76633	1	6790	6790		13.737	2.5667	1	14094			27613	3465	15887	16340	22052	22052					-0.006714780974562018
TYMDRVFKQF	10	Unmodified	_TYMDRVFKQF_					0	0	0		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.8317227879501	2	667.831723	1333.64889	1.9901	0.0013291	-0.90763	-0.00060614	1.0825	0.00072293	667.8312454540036	23.128	0.14468	23.128	23.103	23.248	0	1098	34	0.960755	0.020148396	0.960755	388.79462	0	8.153595						111	7	3	NaN	NaN	NaN	0.089401	1	19308	19308		47.424	31.602	1	12194			27614	3982	15888	16341	22053	22053					-0.004585847915677732
TYMDRVFKQF	10	Unmodified	_TYMDRVFKQF_					0	0	0		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.8317227879501	2	667.831723	1333.64889	1.8615	0.0012432	-0.98196	-0.00065578	0.87956	0.0005874	668.3322767133791	23.223	0.14475	23.21	23.162	23.307	-0.013294	1095	37	0.9625867	0.02198124	0.96106726	389.53586	0	8.895294						149	7	3	NaN	NaN	NaN	0.12314	1	18445	18445		42.779	26.195	1	14913			27615	3982	15888	16341	22054	22054					-0.004585847915677732
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(44)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.7626401697501	2	616.76264	1231.51073	1.2148	0.00074922	-0.29994	-0.00018499	0.91483	0.00056423	616.7624148116188	27.615	0.24132	27.615	27.543	27.784	0	1173	67	0.91489893	0.04042524	0.91489893	370.5525	0	16.373077						360	11	3	NaN	NaN	NaN	0.056143	1	17293	17293		44.302	25.139	1	101620			27616	431	15889	16342	22055	22055		39			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(78)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.7626401697501	2	616.76264	1231.51073	0.77532	0.00047819	-0.26513	-0.00016352	0.51019	0.00031467	616.7621113491663	27.615	0.28958	27.605	27.508	27.798	-0.009552	1173	58	0.91489893	0.034907043	0.9133795	370.5525	0	14.138092						363	13	3	NaN	NaN	NaN	0.014943	1	16570	16570		78.398	55.063	1	108350			27617	431	15889	16342	22056	22056		39			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)						0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.76264	1231.51073	1.2569	0.00077523	-3.3152	-0.0020447	-2.0583	-0.0012695	616.7609863737092	27.446	0.096481	27.436	27.411	27.508	-0.010126	1194	52	0.902037	0.03123939	0.9005176	365.34317		12.652588	-0.089929	-0.0033615	-0.0071907	NaN	44.302	66	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3556.6			27618	431	15889	16342				39			-0.09576752830685109
TYMKDLYQL	9	Unmodified	_TYMKDLYQL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.79427464915	2	587.794275	1173.574	2.045	0.001202	-1.7802	-0.0010464	0.26472	0.0001556	587.793477452811	23.586	0.19271	23.586	23.538	23.73	0	1110	85	0.95342636	0.05134499	0.95342636	386.36813	0	20.807129						388	9	5	NaN	NaN	NaN	0.013225	1	15602	15602		104.2	40.24	1	78301			27619	3562	15890	16343	22057	22057					-0.005847673228117856
TYMKDLYQL	9	Unmodified	_TYMKDLYQL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.79427464915	2	587.794275	1173.574	1.7487	0.0010279	-2.739	-0.00161	-0.99024	-0.00058206	587.7930946023666	23.609	0.19282	23.596	23.548	23.741	-0.013048	1110	70	0.95342636	0.04216945	0.9519069	386.36813	0	17.088806						366	9	4	NaN	NaN	NaN	0.031551	1	15047	15047		72.076	45.961	1	75988			27620	3562	15890	16343	22058	22058					-0.005847673228117856
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(64)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.7917319602	2	595.791732	1189.56891	1.0887	0.00064864	-3.0227	-0.0018009	-1.934	-0.0011523	595.7904901050837	20.429	0.12051	20.415	20.343	20.463	-0.014141	1152	118	0.92775106	0.07165146	0.9262317	375.90472	0	29.031616						517	6	5	NaN	NaN	NaN	0.026443	1	15527	15527		63.765	33.155	1	87030			27621	3562	15890	16344	22059	22059		400			-0.018290711854206165
TYMKDLYQL	9	Oxidation (M)						0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.791732	1189.56891	1.298	0.00077334	-2.7326	-0.001628	-1.4346	-0.00085471	595.7909674983154	20.405	0.24038	20.405	20.333	20.573	0	1149	127	0.92958635	0.07714236	0.92958635	376.64832		31.256378	-0.0050102	0.00013453	0.0016773	NaN	63.765	578	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92627			27622	3562	15890	16344				400			-0.018290711854206165
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1088.4894809364998	1	1088.48948	1087.4822	2.1681	0.00236	-0.97034	-0.0010562	1.1978	0.0013038	1088.4885982064277	23.465	0.14472	23.465	23.417	23.562	0	105	61	1.5564433	0.035358667	1.5564433	315.66144	0	7.171051						174	7	3	NaN	NaN	NaN	0.028569	1	12261	12261		60.984	33.687	1	16281			27623	3062	15891	16345	22060	22060					-0.05803734415621875
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.74837870155	2	544.748379	1087.4822	1.8785	0.0010233	-0.52376	-0.00028532	1.3548	0.00073801	544.7479809683415	23.465	0.1688	23.465	23.417	23.586	0	1224	58	0.883646	0.034963727	0.883646	358.41937	0	14.181793						270	8	3	NaN	NaN	NaN	0.11656	1	12262	12262		33.425	11.59	1	84456			27624	3062	15891	16345	22061	22061					-0.05803734415621875
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.74837870155	2	544.748379	1087.4822	2.0036	0.0010914	-1.0113	-0.0005509	0.99227	0.00054054	544.7474697660596	23.465	0.24126	23.451	23.403	23.644	-0.013294	1224	58	0.883646	0.034963727	0.88212657	358.41937	0	14.181793						307	11	3	NaN	NaN	NaN	0.032689	1	11951	11951		55.592	23.916	1	89766			27625	3062	15891	16345	22062	22062					-0.05803734415621875
TYNDQSITF	9	Unmodified	_TYNDQSITF_					0	0	0		nc|ENSG00000137033|O95760-3|IL33;ENSG00000137033|ENST00000682010|IL33	nc|ENSG00000137033|O95760-3|IL33	nc|ENSG00000137033|O95760-3|IL33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.4894809364998	1	1088.48948	1087.4822	1.6714	0.0018193	-0.41864	-0.00045569	1.2527	0.0013636	1088.4893137824788	23.465	0.12064	23.451	23.427	23.548	-0.013294	102	49	1.5582114	0.028286815	1.556692	316.02	0	5.736847						134	6	3	NaN	NaN	NaN	0.12866	1	11952	11952		31.675	14.817	1	13895			27626	3062	15891	16345	22063	22063					-0.05803734415621875
TYNGYWNTPL	10	Unmodified	_TYNGYWNTPL_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	nc|ENSG00000173482|P28827|PTPRM	nc|ENSG00000173482|P28827|PTPRM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7852955241001	2	614.785296	1227.55604	0.88096	0.0005416	-9.203	-0.0056579	-8.322	-0.0051163	614.7805707718665	24.405	0.24133	24.393	24.296	24.537	-0.012747	1167	64	0.91857195	0.038569033	0.9170525	372.05347	0	15.621796						297	11	3	NaN	NaN	NaN	0.69669	1	16477	16477		8.2775	1.1472	1	55519			27627	4897	15892	16346	22064	22064					-0.04863766253288304
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2844000670999	2	545.2844	1088.55425	1.226	0.00066853	-2.3155	-0.0012626	-1.0895	-0.00059407	545.2831483573425	35.964	0.14463	35.964	35.94	36.085	0	1284	85	0.8468043	0.05159515	0.8468043	343.47162	0	20.92746						390	7	4	NaN	NaN	NaN	0.030696	1	12324	12324		58.2	34.865	1	43016			27628	471	15893	16347	22065	22065					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5615236675997	1	1089.56152	1088.55425	1.9128	0.0020842	-0.44768	-0.00048778	1.4652	0.0015964	1089.5611071760175	35.964	0.21698	35.964	35.868	36.085	0	72	103	1.5758814	0.060084105	1.5758814	319.59967	0	12.185486						483	10	4	NaN	NaN	NaN	0.01966	1	12326	12326		72.428	27.79	1	76491			27629	471	15893	16347	22066	22066					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2844000670999	2	545.2844	1088.55425	1.151	0.00062765	-1.4517	-0.0007916	-0.30067	-0.00016395	545.283731661046	35.987	0.12062	35.988	35.94	36.06	0.0011024	1281	94	0.84864825	0.057107806	0.8471288	344.21954	0	23.163452						287	6	3	NaN	NaN	NaN	0.042816	1	12020	12020		49.961	26.627	1	30968			27630	471	15893	16347	22067	22067					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5615236675997	1	1089.56152	1088.55425	1.0609	0.0011559	0.54505	0.00059387	1.6059	0.0017498	1089.5620032974423	35.963	0.24106	35.964	35.867	36.108	0.0011024	72	112	1.5758814	0.06538224	1.5743619	319.59967	0	13.259949						565	11	4	NaN	NaN	NaN	0.01966	1	12021	12021		72.428	17.015	1	79047			27631	471	15893	16347	22068	22068					0.013512247287280843
TYNKHINISF	10	Unmodified	_TYNKHINISF_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.82221234665	2	618.822212	1235.62987	1.5497	0.000959	-0.93903	-0.00058109	0.61069	0.00037791	618.82234433704	18.842	0.12014	18.828	18.78	18.9	-0.014059	1140	34	0.93509084	0.020176709	0.9335714	378.71664	0	8.171661						86	6	3	NaN	NaN	NaN	0.43797	1	16690	16690		16.858	13.289	1	5223.8			27632	4893	15894	16348	22069	22069					0.02148201909017189
TYNKHINISF	10	Unmodified						0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.822212	1235.62987	1.8222	0.0011276	-1.9415	-0.0012015	-0.1193	-7.3827E-05	619.3213383567777	18.7	0.095955	18.7	18.676	18.772	0	1140	34	0.93509084	0.02018106	0.93509084	378.71664		8.173431	-0.063635	-0.0006135	0.00075972	NaN	16.858	75	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5337.2			27633	4893	15894	16348							0.02148201909017189
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.2098363849334	3	390.209836	1167.60768	1.5043	0.00058698	-3.892	-0.0015187	-2.3877	-0.00093172	390.2083453212927	22.621	0.12062	22.621	22.597	22.718	0	1470	43	0.7320868	0.025991142	0.7320868	445.03012	0	15.799774						106	6	2	NaN	NaN	NaN	0.45297	1	15403	15403		10.36	6.4515	1	14041			27634	3718	15895	16349	22070	22070					0.030580222312892147
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.2098363849334	3	390.209836	1167.60768	1.4942	0.00058304	0.3943	0.00015386	1.8885	0.00073689	390.20992716390117	22.79	0.072306	22.776	22.728	22.8	-0.01354	1467	37	0.7339432	0.022275686	0.7324238	446.1586	0	13.541229						84	4	3	NaN	NaN	NaN	0.47587	1	14870	14870		6.4299	0	1	8902.2			27635	3718	15895	16349	22071	22071					0.030580222312892147
TYNLKYNSP	9	Unmodified	_TYNLKYNSP_					0	0	0		ENST00000488014.5_1_1:84335647-84352897:-|nuORF;ENST00000480174.5_1_1:84335647-84372167:-|nuORF;ENSG00000137941|ENST00000260505|TTLL7	ENST00000488014.5_1_1:84335647-84352897:-|nuORF	ENST00000488014.5_1_1:84335647-84352897:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2745636623	2	550.274564	1098.53457	1.3729	0.00075546	-9.2877	-0.0051108	-7.9148	-0.0043553	550.2714439027561	36.76	0.096176	36.76	36.736	36.832	0	1260	34	0.8615505	0.020266235	0.8615505	349.41318	0	8.219208						55	5	3	NaN	NaN	NaN	0.41766	1	12780	12780		13.003	1.8325	1	2643.8			27636	3117	15896	16350	22072	22072					-0.010751512820206699
TYNMVLNLL	9	Unmodified	_TYNMVLNLL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7915349949501	2	540.791535	1079.56852	1.362	0.00073657	-1.9953	-0.0010791	-0.63331	-0.00034249	540.7905379629027	34.179	0.19302	34.179	34.131	34.324	0	1227	61	0.88180584	0.03680992	0.88180584	357.70575	0	14.931976						319	9	4	NaN	NaN	NaN	0.059222	1	11966	11966		42.995	21.16	1	68709			27637	523	15897	16351	22073	22073					0.03191553885403664
TYNMVLNLL	9	Unmodified	_TYNMVLNLL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5757935233	1	1080.57579	1079.56852	0.97054	0.0010487	-0.96699	-0.0010449	0.003547	3.8328E-06	1080.573765268733	34.179	0.096466	34.179	34.155	34.252	0	66	76	1.579413	0.04415846	1.579413	320.34933	0	8.9565735						209	5	4	NaN	NaN	NaN	0.03533	1	11967	11967		53.14	27.339	1	25949			27638	523	15897	16351	22074	22074					0.03191553885403664
TYNMVLNLL	9	Unmodified	_TYNMVLNLL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.7915349949501	2	540.791535	1079.56852	1.1274	0.00060971	-1.7755	-0.0009602	-0.64811	-0.00035049	540.7905064630575	34.178	0.19301	34.177	34.129	34.322	-0.0012474	1221	64	0.885486	0.038648307	0.88396657	359.19864	0	15.677734						343	9	4	NaN	NaN	NaN	0.12866	1	11659	11659		31.675	8.341	1	70322			27639	523	15897	16351	22075	22075					0.03191553885403664
TYNMVLNLL	9	Unmodified						0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1080.57579	1079.56852	1.4624	0.0015802	-2.8621	-0.0030927	-1.3997	-0.0015125	1080.5720188789528	34.178	0.096581	34.177	34.129	34.225	-0.0012474	63	76	1.5811787	0.04415846	1.5796592	320.70746		8.956604	-0.0011953	-0.0011664	0.00012308	NaN	53.14	133	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18886			27640	523	15897	16351							0.03191553885403664
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(45)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7889923060001	2	548.788992	1095.56343	0.83628	0.00045894	-1.1228	-0.0006162	-0.28655	-0.00015726	548.7888275791039	30.922	0.16894	30.922	30.897	31.066	0	1230	67	0.8799654	0.040482104	0.8799654	356.89352	0	16.41858						331	8	4	NaN	NaN	NaN	0.054111	1	12656	12656		45.165	20.603	1	50653			27641	523	15897	16352	22076	22076		49			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(48)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7889923060001	2	548.788992	1095.56343	1.188	0.00065196	-0.91869	-0.00050417	0.26931	0.00014779	548.7887900170485	30.896	0.16897	30.891	30.866	31.035	-0.0057545	1227	67	0.88180584	0.040482104	0.8802864	357.63995	0	16.41858						319	8	4	NaN	NaN	NaN	0.04743	1	12330	12330		48.002	24.885	1	55171			27642	523	15897	16352	22077	22077		49			0.019472500227720957
TYNNASEPD	9	Unmodified	_TYNNASEPD_					0	0	0			REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	REV__ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.70671085209995	2	505.706711	1009.39887	1.2898	0.00065227	5.7577	0.0029117	7.0475	0.003564	505.7101557181287	29.183	0.12068	29.175	29.151	29.272	-0.0077209	1350	37	0.80618626	0.02218169	0.8046668	327.31683	0	9.00592						85	6	2	NaN	NaN	NaN	0.33629	1	8766	8766		16.584	1.1215	1	5527.2	+		27643	10580	15898	16353	22078	22078					-0.10545470863473838
TYNPEIYVI	9	Unmodified	_TYNPEIYVI_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2871397213	2	556.28714	1110.55973	1.4323	0.00079678	-0.80436	-0.00044746	0.62795	0.00034932	556.2877726532236	28.556	0.09654	28.556	28.484	28.581	0	1239	79	0.87444305	0.047863185	0.87444305	354.5943	0	19.408936						177	5	3	NaN	NaN	NaN	0.33202	1	13305	13305		16.858	1.3956	1	43123			27644	4301	15899	16354	22079	22079					0.008869035205634646
TYNPEIYVI	9	Unmodified	_TYNPEIYVI_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.567002976	1	1111.567	1110.55973	0.98033	0.0010897	-2.1932	-0.0024378	-1.2128	-0.0013481	1111.5629521396168	28.556	0.096519	28.547	28.523	28.62	-0.0083504	72	88	1.5758814	0.051240087	1.5743619	319.5204	0	10.389252						142	5	2	NaN	NaN	NaN	0.032826	1	12925	12925		55.413	29.298	1	13042			27645	4301	15899	16354	22080	22080					0.008869035205634646
TYNPFYAFL	9	Unmodified	_TYNPFYAFL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2765750350001	2	568.276575	1134.5386	1.5618	0.00088753	-1.8231	-0.001036	-0.26128	-0.00014848	568.2759647010978	35.964	0.24109	35.964	35.868	36.109	0	1209	58	0.892844	0.034948587	0.892844	361.96222	0	14.168304						337	11	3	NaN	NaN	NaN	0.059222	1	14256	14256		42.995	19.66	1	51351			27646	3578	15900	16355	22081	22081					-0.023290617882821607
TYNPFYAFL	9	Unmodified	_TYNPFYAFL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2765750350001	2	568.276575	1134.5386	0.97783	0.00055568	-1.577	-0.00089617	-0.59916	-0.00034049	568.2755659426506	35.963	0.21696	35.964	35.891	36.108	0.0011024	1206	64	0.894683	0.038623214	0.89316356	362.70776	0	15.6579895						275	10	3	NaN	NaN	NaN	0.18779	1	13795	13795		26.115	2.7805	1	36856			27647	3578	15900	16355	22082	22082					-0.023290617882821607
TYNPFYAFL	9	Unmodified						0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.276575	1134.5386	1.0913	0.00062018	-6.7728	-0.0038488	-5.6814	-0.0032286	568.7726630963141	35.818	0.072296	35.819	35.794	35.867	0.00052643	1200	64	0.89836043	0.038623214	0.896841	364.1986		15.6579895	-0.072807	-0.0045278	0.0019985	NaN	42.995	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5862.7			27648	3578	15900	16355							-0.023290617882821607
TYNPNMPFKW	10	Oxidation (M)	_TYNPNM(Oxidation (M))PFKW_		TYNPNM(1)PFKW		TYNPNM(41)PFKW	0	0	1		ENSG00000060339|ENST00000265872|CCAR1;nc|ENSG00000060339|Q8IX12-2|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.302798173	2	657.302798	1312.59104	1.337	0.0008788	-1.9005	-0.0012492	-0.56355	-0.00037042	657.3016380844725	22.958	0.16874	22.945	22.896	23.065	-0.01354	1134	73	0.9387595	0.04401946	0.93724006	379.9561	0	17.816559						213	8	3	NaN	NaN	NaN	0.13684	1	18152	18152		40.957	22.987	1	22542			27649	636	15901	16356	22083	22083		65			-0.05274846716997672
TYNQHYNNL	9	Unmodified	_TYNQHYNNL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.7648944330001	2	583.764894	1165.51524	1.4934	0.00087179	-2.3154	-0.0013516	-0.822	-0.00047986	583.7633874317274	14.572	0.095842	14.561	14.513	14.609	-0.011218	1215	40	0.8891654	0.023914814	0.88764596	360.35587	0	9.692047						101	5	3	NaN	NaN	NaN	0.31737	1	14787	14787		17.799	4.3359	1	7534.6			27650	5359	15902	16357	22084	22084					-0.06090107572890702
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.28800538855	2	569.288005	1136.56146	1.6899	0.00096202	-5.6798	-0.0032334	-3.9899	-0.0022714	569.7864863481852	15.077	0.19222	15.077	15.029	15.222	0	1242	64	0.87260187	0.038664997	0.87260187	353.74844	0	15.674591						299	9	3	NaN	NaN	NaN	0.25548	1	14338	14338		21.771	3.9721	1	38574			27651	4382	15903	16358	22085	22085					-0.001360426708288287
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.8610957479	3	379.861096	1136.56146	1.527	0.00058004	-0.91566	-0.00034782	0.61133	0.00023222	380.1951927428794	15.196	0.07204	15.184	15.136	15.208	-0.012202	1506	40	0.70979416	0.024164736	0.7082747	431.61594	0	14.694244						80	4	2	NaN	NaN	NaN	0.2961	1	13868	13868		13.101	5.2973	1	9821.9			27652	4382	15903	16358	22086	22086					-0.001360426708288287
TYNSNLFFW	9	Unmodified	_TYNSNLFFW_					0	0	0		CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.27710635125	2	596.277106	1190.53966	1.1006	0.00065627	0.0013139	7.8345E-07	1.1019	0.00065705	596.27798348662	34.348	0.1929	34.348	34.252	34.445	0	1182	73	0.9093879	0.04411459	0.9093879	368.46088	0	17.874115						207	9	4	NaN	NaN	NaN	0.39244	1	16160	16160		14.042	3.6814	1	18960			27653	228	15904	16359	22087	22087					-0.04798847419397134
TYNSNLFFW	9	Unmodified	_TYNSNLFFW_					0	0	0		CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.27710635125	2	596.277106	1190.53966	0.76346	0.00045523	0.61008	0.00036378	1.3735	0.00081901	596.2777119435314	34.347	0.16862	34.346	34.298	34.466	-0.0012474	1179	55	0.9112251	0.033075213	0.90970564	369.20526	0	13.401245						157	8	3	NaN	NaN	NaN	0.36492	1	15547	15547		15.175	4.5704	1	17821			27654	228	15904	16359	22088	22088					-0.04798847419397134
TYNTTSAVTVK	11	Unmodified	_TYNTTSAVTVK_					0	0	0		ENST00000496450.1_1_11:27505577-27505652:+|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	ENST00000496450.1_1_11:27505577-27505652:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8115102746	2	592.81151	1183.60847	1.3675	0.00081067	-0.28528	-0.00016912	1.0822	0.00064155	592.8106420707503	14.861	0.048089	14.861	14.837	14.885	0	1182	25	0.9093879	0.014698505	0.9093879	368.4856	0	5.9558716						41	3	2	NaN	NaN	NaN	0.43114	1	15970	15970		20.936	5.4735	1	3112.1			27655	5730	15905	16360	22089	22089					0.024007720896634055
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.27710635125	2	602.277106	1202.53966	1.9077	0.001149	-1.3959	-0.00084073	0.51177	0.00030822	602.2761208935307	22.742	0.33765	22.742	22.645	22.983	0	1185	67	0.90755045	0.04042524	0.90755045	367.67438	0	16.37741						475	15	4	NaN	NaN	NaN	0.021105	1	16539	16539		70.6	34.365	1	214130			27656	7927	15906	16361	22090	22090					-0.053508474193904476
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.27710635125	2	602.277106	1202.53966	1.3286	0.00080016	-0.88922	-0.00053555	0.43934	0.00026461	602.2766591736596	22.766	0.36166	22.752	22.607	22.969	-0.01354	1185	76	0.90755045	0.045935333	0.906031	367.67438	0	18.60971						401	16	2	NaN	NaN	NaN	0.023074	1	15887	15887		68.108	27.151	1	188940			27657	7927	15906	16361	22091	22091					-0.053508474193904476
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.76128911155	2	517.761289	1033.50803	2.1247	0.0011001	-3.4845	-0.0018042	-1.3598	-0.00070406	517.7596469683483	23.513	0.19282	23.513	23.465	23.658	0	1290	58	0.84311575	0.03505075	0.84311575	342.20306	0	14.226349						305	9	4	NaN	NaN	NaN	0.055351	1	9920	9920		44.638	21.304	1	74581			27658	1604	15907	16362	22092	22092					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5153017564999	1	1034.5153	1033.50803	2.0513	0.0021221	-0.030668	-3.1727E-05	2.0207	0.0020904	1034.5152727254542	23.513	0.16869	23.513	23.465	23.634	0	171	145	1.5174994	0.08518517	1.5174994	307.9646	0	17.287659						540	8	3	NaN	NaN	NaN	0.0035249	1	9921	9921		106.42	53.801	1	83853			27659	1604	15907	16362	22093	22093					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.76128911155	2	517.761289	1033.50803	1.8415	0.00095343	-2.5241	-0.0013069	-0.68263	-0.00035344	517.7601228406887	23.513	0.21705	23.5	23.451	23.668	-0.013294	1290	58	0.84311575	0.035046935	0.8415963	342.20306	0	14.224823						312	10	4	NaN	NaN	NaN	0.026469	1	9712	9712		63.731	21.413	1	73777			27660	1604	15907	16362	22094	22094					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5153017564999	1	1034.5153	1033.50803	1.9191	0.0019853	-0.46855	-0.00048472	1.4505	0.0015006	1034.5146898389796	23.513	0.19291	23.5	23.476	23.668	-0.013294	168	145	1.5192716	0.08518517	1.5177522	308.32425	0	17.287659						530	9	4	NaN	NaN	NaN	1.1649E-05	1	9713	9713		128.29	64.564	1	85576			27661	1604	15907	16362	22095	22095					-0.007388401733351202
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.4789162502001	1	1022.47892	1021.47164	2.1454	0.0021936	-1.4633	-0.0014962	0.68212	0.00069746	1022.4772202152421	20.622	0.28899	20.622	20.501	20.79	0	276	55	1.4553556	0.032022476	1.4553556	295.39883	0	6.4997253						364	13	4	NaN	NaN	NaN	0.0042638	1	9424	9424		104.2	42.927	1	44061			27662	2349	15908	16363	22096	22096					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.4789162502001	1	1022.47892	1021.47164	1.4444	0.0014769	0.58748	0.00060069	2.0319	0.0020775	1022.4789241922003	20.646	0.24098	20.632	20.511	20.752	-0.014086	279	58	1.4535767	0.033799767	1.4520572	295.03775	0	6.860443						299	11	2	NaN	NaN	NaN	3.0773E-07	1	9232	9232		130.13	47.175	1	48107			27663	2349	15908	16363	22097	22097					-0.03823717070042676
TYPEGLEVLHF	11	Unmodified	_TYPEGLEVLHF_					0	0	0		ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.82970302775	2	652.829703	1303.64485	1.5652	0.0010218	-2.4641	-0.0016086	-0.89887	-0.00058681	652.8281970197698	28.701	0.26544	28.701	28.581	28.846	0	1104	73	0.9570911	0.043976784	0.9570911	387.40332	0	17.800568						563	12	5	NaN	NaN	NaN	0.14658	1	18834	18834		35.296	17.498	1	130780			27664	3756	15909	16364	22098	22098					0.005176489863742972
TYPEGLEVLHF	11	Unmodified	_TYPEGLEVLHF_					0	0	0		ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	ENSG00000151849|ENST00000381884|CENPJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.82970302775	2	652.829703	1303.64485	0.8481	0.00055366	-2.2555	-0.0014725	-1.4074	-0.00091881	652.8281327907607	28.701	0.26542	28.692	28.596	28.861	-0.0083504	1101	67	0.95892316	0.040316403	0.9574037	388.1449	0	16.31894						595	12	5	NaN	NaN	NaN	0.038403	1	18002	18002		52.78	34.81	1	132170			27665	3756	15909	16364	22099	22099					0.005176489863742972
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.28018035645	2	592.28018	1182.54581	1.5974	0.00094611	1.3605	0.00080582	2.9579	0.0017519	592.2803135909992	22.621	0.14477	22.621	22.573	22.718	0	1170	58	0.91673553	0.034895778	0.91673553	371.46674	0	14.139984						124	7	2	NaN	NaN	NaN	0.33202	1	15914	15914		16.858	2.4333	1	29770			27666	6120	15910	16365	22100	22100					-0.03816329187861811
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.28018035645	2	592.28018	1182.54581	1.1041	0.00065397	-5.743	-0.0034015	-4.6389	-0.0027475	592.2762261067643	22.5	0.096495	22.486	22.462	22.559	-0.013731	1206	97	0.894683	0.05885768	0.89316356	362.53094	0	23.849457						250	5	3	NaN	NaN	NaN	0.12328	1	15305	15305		32.453	9.1183	1	115370			27667	6120	15910	16365	22101	22101					-0.03816329187861811
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.28018035645	2	592.28018	1182.54581	1.0221	0.00060535	-1.2004	-0.00071096	-0.17832	-0.00010561	592.2792895964782	22.428	0.096205	22.414	22.342	22.438	-0.013731	1200	67	0.89836043	0.04046464	0.896841	364.02103	0	16.396484						115	5	2	NaN	NaN	NaN	0.12328	1	15308	15308		32.453	9.1183	1	98346			27668	6120	15910	16365	22102	22102					-0.03816329187861811
TYPENWRAF	9	Unmodified						0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.28018	1182.54581	0.94419	0.00055923	1.1834	0.00070092	2.1276	0.0012601	592.7833874280052	22.621	0.14472	22.607	22.583	22.728	-0.01354	1173	58	0.91489893	0.034895778	0.9133795	370.7225		14.139984	-0.0070631	-0.00012374	-0.001678	NaN	16.858	149	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25084			27669	6120	15910	16365							-0.03816329187861811
TYPEYLQYIYL	11	Unmodified	_TYPEYLQYIYL_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3661183238002	2	733.366118	1464.71768	1.7076	0.0012523	-0.86608	-0.00063516	0.84149	0.00061712	733.3662807669904	34.347	0.12037	34.346	34.298	34.418	-0.0012474	1008	34	1.0156195	0.020083427	1.0141001	410.61957	0	8.119812						64	6	2	NaN	NaN	NaN	0.57257	1	19465	19465		15.822	2.3589	1	4301.4			27670	4220	15911	16366	22103	22103					0.003913579891559493
TYPKIWVKV	9	Unmodified	_TYPKIWVKV_					0	0	0		ENSG00000243649|ENST00000425368|CFB;nc|ENSG00000243649|P00751-2|CFB	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.5620985840667	3	378.562099	1132.66447	1.3901	0.00052626	-3.1935	-0.0012089	-1.8033	-0.00068268	378.5613185332799	21.272	0.048159	21.272	21.248	21.296	0	1413	34	0.7673241	0.02037841	0.7673241	466.6183	0	12.392334						71	3	3	NaN	NaN	NaN	0.40649	1	14209	14209		13.463	3.2193	1	5607.9		+	27671	6086	15912	16367	22104	22104					0.10344069787788612
TYPKIWVKV	9	Unmodified	_TYPKIWVKV_					0	0	0		ENSG00000243649|ENST00000425368|CFB;nc|ENSG00000243649|P00751-2|CFB	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3395096428001	2	567.33951	1132.66447	1.6759	0.00095081	-1.926	-0.0010927	-0.25014	-0.00014191	567.3383523432398	21.272	0.19257	21.272	21.2	21.392	0	1170	40	0.91673553	0.023873508	0.91673553	371.65533	0	9.678589						167	9	2	NaN	NaN	NaN	0.37272	1	14210	14210		16.584	6.9725	1	36599		+	27672	6086	15912	16367	22105	22105					0.10344069787788612
TYPKIWVKV	9	Unmodified	_TYPKIWVKV_					0	0	0		ENSG00000243649|ENST00000425368|CFB;nc|ENSG00000243649|P00751-2|CFB	ENSG00000243649|ENST00000425368|CFB	ENSG00000243649|ENST00000425368|CFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3395096428001	2	567.33951	1132.66447	1.2451	0.00070641	-1.9724	-0.001119	-0.72728	-0.00041262	567.3382853416225	21.368	0.19244	21.354	21.282	21.475	-0.014006	1170	40	0.91673553	0.023873508	0.9152161	371.65533	0	9.678589						176	9	2	NaN	NaN	NaN	0.15381	1	13755	13755		25.801	16.678	1	34886		+	27673	6086	15912	16367	22106	22106					0.10344069787788612
TYPLIFASI	9	Unmodified	_TYPLIFASI_					0	0	0		ENST00000566072.1_1_15:55611475-55617022:+|nuORF;ENSG00000069943|ENST00000164305|PIGB	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5713600724	1	1024.57136	1023.56408	2.1348	0.0021872	-0.26462	-0.00027112	1.8702	0.0019161	1024.5716368664603	34.372	0.21703	34.372	34.3	34.517	0	168	97	1.5192716	0.05668187	1.5192716	308.36368	0	11.504608						437	10	4	NaN	NaN	NaN	0.0018626	1	9525	9525		111.43	34.694	1	59331			27674	748	15913	16368	22107	22107					0.05324412734148609
TYPLIFASI	9	Unmodified	_TYPLIFASI_					0	0	0		ENST00000566072.1_1_15:55611475-55617022:+|nuORF;ENSG00000069943|ENST00000164305|PIGB	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5713600724	1	1024.57136	1023.56408	1.377	0.0014108	-0.071262	-7.3013E-05	1.3057	0.0013378	1024.5708744999822	34.371	0.19274	34.37	34.274	34.467	-0.00064468	165	94	1.5210435	0.05490756	1.5195241	308.72333	0	11.14447						435	9	3	NaN	NaN	NaN	0.0094682	1	9343	9343		93.472	26.317	1	56007			27675	748	15913	16368	22108	22108					0.05324412734148609
TYPNTYIF	8	Unmodified	_TYPNTYIF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.4880243734999	1	1018.48802	1017.48075	2.4812	0.0025271	3.0772	0.0031341	5.5584	0.0056612	1018.4921732664661	27.615	0.24131	27.615	27.471	27.712	0	189	151	1.5068626	0.08875346	1.5068626	305.86935	0	18.015533						755	11	3	NaN	NaN	NaN	0.3434	1	9260	9260		39.459	0.54089	1	104730			27676	1292	15914	16369	22109	22109					-0.027293237137314463
TYPNTYIF	8	Unmodified	_TYPNTYIF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.4880243734999	1	1018.48802	1017.48075	1.6835	0.0017146	3.9655	0.0040388	5.649	0.0057534	1018.4928888068284	27.59	0.3137	27.581	27.436	27.75	-0.009552	186	151	1.5086359	0.088744044	1.5071164	306.2293	0	18.013641						768	14	3	NaN	NaN	NaN	0.13059	1	9080	9080		58.235	15.241	1	104050			27677	1292	15914	16369	22110	22110					-0.027293237137314463
TYPNTYIFDLF	11	Unmodified	_TYPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.33736088435	2	697.337361	1392.66017	0.57349	0.00039992	-1.4967	-0.0010437	-0.92318	-0.00064377	697.3364859897814	37.723	0.21654	37.723	37.65	37.867	0	1104	97	0.9570911	0.05857253	0.9570911	387.14355	0	23.692596						413	10	4	NaN	NaN	NaN	0.030127	1	20002	20002		56.466	34.694	1	38794			27678	1292	15915	16370	22111	22111					-0.020454842164326692
TYPNTYIFDLF	11	Unmodified	_TYPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.33736088435	2	697.337361	1392.66017	0.86171	0.0006009	-1.6369	-0.0011415	-0.77516	-0.00054055	697.3364509087928	37.72	0.19242	37.723	37.651	37.843	0.0028229	1101	100	0.95892316	0.060393214	0.9574037	387.88464	0	24.429077						352	9	3	NaN	NaN	NaN	0.10634	1	19066	19066		39.039	26.469	1	35924			27679	1292	15915	16370	22112	22112					-0.020454842164326692
TYPPFVNFF	9	Unmodified	_TYPPFVNFF_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1131.5509589813	1	1131.55096	1130.54368	0.6567	0.00074309	-7.6624	-0.0086704	-7.0057	-0.0079273	1132.5462858977523	35.794	0.19277	35.794	35.65	35.843	0.00052643	78	64	1.5723488	0.03708923	1.5708294	318.73495	0	7.518463						160	9	2	NaN	NaN	NaN	0.13602	1	13639	13639		30.61	3.8786	1	12063			27680	1955	15916	16371	22113	22113					-0.01636757925666643
TYPPFVNFF	9	Unmodified	_TYPPFVNFF_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2791177239501	2	566.279118	1130.54368	0.80619	0.00045653	-0.96533	-0.00054665	-0.15914	-9.0116E-05	566.2790929001906	35.77	0.21692	35.77	35.674	35.891	0.00053024	1257	82	0.86339295	0.049701393	0.8618735	350.0375	0	20.149994						365	10	3	NaN	NaN	NaN	0.021105	1	13642	13642		70.6	45.639	1	38948			27681	1955	15916	16371	22114	22114					-0.01636757925666643
TYPQLEGFKF	10	Unmodified	_TYPQLEGFKF_					0	0	0		nc|ENSG00000128815|Q6ZS81-2|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3136888228	2	615.313689	1228.61282	1.0797	0.00066438	-1.5549	-0.00095674	-0.47515	-0.00029236	615.3128857432556	26.601	0.12068	26.601	26.529	26.65	0	1155	67	0.92591566	0.04038167	0.92591566	375.02432	0	16.355804						226	6	3	NaN	NaN	NaN	0.50283	1	17210	17210		19.336	11.059	1	26466			27682	2584	15917	16372	22115	22115					0.007662813032311533
TYPSPDIF	8	Unmodified	_TYPSPDIF_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4458252078	1	939.445825	938.438549	1.8013	0.0016923	-0.26642	-0.00025029	1.5349	0.001442	939.4463578755092	26.963	0.072407	26.952	26.928	27.001	-0.010645	327	40	1.425088	0.023165584	1.4235686	289.59598	0	4.7075195						85	4	2	NaN	NaN	NaN	0.82797	1	6639	6639		5.4659	0.55612	1	6681			27683	2626	15918	16373	22116	22116					-0.033132991221009434
TYPTLFQGW	9	Unmodified	_TYPTLFQGW_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1112.5411225765	1	1112.54112	1111.53385	1.5301	0.0017023	-0.54182	-0.00060279	0.98825	0.0010995	1112.540712319963	32.297	0.19306	32.297	32.225	32.418	0	108	79	1.5546752	0.045956492	1.5546752	315.2173	0	9.317871						181	9	2	NaN	NaN	NaN	0.032826	1	13337	13337		55.413	27.624	1	17370			27684	2877	15919	16374	22117	22117					-0.01745945931065762
TYPTLFQGW	9	Unmodified	_TYPTLFQGW_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.5411225765	1	1112.54112	1111.53385	0.67899	0.0007554	-0.87646	-0.0009751	-0.19747	-0.0002197	1112.540691680246	32.296	0.12069	32.292	32.22	32.341	-0.0037613	105	64	1.5564433	0.037124634	1.5549239	315.5758	0	7.5271606						155	6	2	NaN	NaN	NaN	0.060816	1	12960	12960		42.318	11.707	1	16801			27685	2877	15919	16374	22118	22118					-0.01745945931065762
TYPYLLAIHQ	10	Unmodified	_TYPYLLAIHQ_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.8295060625001	2	609.829506	1217.64446	0.70256	0.00042844	-4.1636	-0.0025391	-3.461	-0.0021106	609.8272296334368	31.017	0.14479	31.012	30.891	31.036	-0.0050716	1140	73	0.93509084	0.04404801	0.9335714	378.77844	0	17.84259						192	7	2	NaN	NaN	NaN	0.76548	1	16257	16257		3.5698	0.35817	1	21459			27686	5686	15920	16375	22119	22119					0.044342740571892136
TYPYLLAIHQ	10	Unmodified						0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	609.829506	1217.64446	0.51771	0.00031572	-1.1402	-0.0006953	-0.62244	-0.00037959	609.8292457205223	30.97	0.096493	30.97	30.873	30.97	0	1137	73	0.9369253	0.04404801	0.9369253	379.5215		17.84256	-0.02109	0.002029	0.0016769	NaN	3.5698	157	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17212			27687	5686	15920	16375							0.044342740571892136
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7852955241	2	602.785296	1203.55604	1.2964	0.00078144	6.6913	0.0040334	7.9877	0.0048149	602.7895118868681	27.35	0.12069	27.35	27.326	27.446	0	1164	76	0.9204082	0.045915484	0.9204082	372.8798	0	18.601501						250	6	3	NaN	NaN	NaN	0.3947	1	16573	16573		13.949	0.94593	1	77977			27688	1954	15921	16376	22120	22120					-0.037597662533016774
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2694782844001	2	548.269478	1094.5244	1.9315	0.001059	-0.29809	-0.00016344	1.6334	0.00089553	548.2693389651452	21.464	0.33739	21.464	21.392	21.73	0	1242	103	0.87260187	0.06261742	0.87260187	353.9112	0	25.396484						807	15	4	NaN	NaN	NaN	0.0092442	1	12597	12597		93.929	12.229	1	704540			27689	5219	15922	16377	22121	22121					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5316801022	1	1095.53168	1094.5244	2.062	0.002259	0.0946	0.00010364	2.1566	0.0023626	1095.531823009667	21.464	0.1928	21.464	21.416	21.609	0	108	88	1.5546752	0.051288962	1.5546752	315.27737	0	10.401062						458	9	4	NaN	NaN	NaN	1.2827E-11	1	12599	12599		141.69	77.962	1	85241			27690	5219	15922	16377	22122	22122					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5316801022	1	1095.53168	1094.5244	1.8688	0.0020474	-0.2836	-0.00031069	1.5852	0.0017367	1095.5314106924181	21.464	0.19288	21.45	21.402	21.595	-0.014006	105	103	1.5564433	0.060141444	1.5549239	315.63596	0	12.196289						434	9	4	NaN	NaN	NaN	1.7449E-35	1	12268	12268		181.68	107.34	1	85022			27691	5219	15922	16377	22123	22123					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2694782844001	2	548.269478	1094.5244	2.1869	0.001199	-0.39359	-0.00021579	1.7933	0.0009832	548.2695101209356	21.464	0.3612	21.45	21.354	21.715	-0.014006	1242	109	0.87260187	0.06630796	0.8710824	353.9112	0	26.89328						859	16	5	NaN	NaN	NaN	1.2827E-11	1	12269	12269		141.69	63.403	1	704580			27692	5219	15922	16377	22124	22124					-0.019077590072356543
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.2823886944001	2	557.282389	1112.55022	1.8797	0.0010475	-1.4012	-0.00078089	0.47843	0.00026662	557.2818082212607	17.669	0.33569	17.669	17.621	17.957	0	1251	46	0.8670771	0.027623832	0.8670771	351.5996	0	11.201447						262	15	3	NaN	NaN	NaN	0.04743	1	13374	13374		48.002	32.54	1	52630			27693	1110	15923	16378	22125	22125					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		ENSG00000093072|ENST00000399837|ADA2;nc|ENSG00000093072|Q9NZK5-2|ADA2	ENSG00000093072|ENST00000399837|ADA2	ENSG00000093072|ENST00000399837|ADA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2823886944001	2	557.282389	1112.55022	1.79	0.00099755	-1.3779	-0.00076789	0.41211	0.00022966	557.2818022553712	17.69	0.19175	17.676	17.628	17.82	-0.013786	1248	52	0.8689189	0.031303644	0.86739945	352.34647	0	12.6936035						264	9	4	NaN	NaN	NaN	0.090258	1	12994	12994		37.231	16.718	1	49703			27694	1110	15923	16378	22126	22126					-0.001548647649542545
TYQLGFHSI	9	Unmodified	_TYQLGFHSI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2718240081001	2	533.271824	1064.5291	2.1111	0.0011258	-1.9549	-0.0010425	0.15614	8.3267E-05	533.2708364071455	22.814	0.096432	22.814	22.766	22.863	0	1281	43	0.84864825	0.025817096	0.84864825	344.31662	0	10.474609						119	5	3	NaN	NaN	NaN	0.03618	1	11327	11327		52.78	12.626	1	24429			27695	3375	15924	16379	22127	22127					-0.0005883007379452465
TYQLGFHSI	9	Unmodified	_TYQLGFHSI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.2718240081001	2	533.271824	1064.5291	0.96993	0.00051724	-1.3421	-0.0007157	-0.37216	-0.00019846	533.2717841424702	22.838	0.14455	22.824	22.728	22.872	-0.01354	1284	67	0.8468043	0.04054779	0.8452849	343.56848	0	16.451202						154	7	3	NaN	NaN	NaN	0.048656	1	11068	11068		47.482	21.367	1	27337			27696	3375	15924	16379	22128	22128					-0.0005883007379452465
TYQPIYTGQMP	11	Unmodified	_TYQPIYTGQMP_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.80791334065	2	649.807913	1297.60127	2.0593	0.0013381	-1.6474	-0.0010705	0.41189	0.00026765	649.8069015080248	26.481	0.24133	26.481	26.36	26.601	0	1128	76	0.9424274	0.045841277	0.9424274	381.4865	0	18.556152						550	11	5	NaN	NaN	NaN	0.40559	1	18732	18732		21.85	0.079341	1	170570	+		27697	9906	15925	16380	22129	22129					-0.03562283782434861
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7852955241001	2	554.785296	1107.55604	1.5205	0.00084355	-1.6531	-0.00091713	-0.13263	-7.3582E-05	554.7840869757757	18.964	0.072033	18.964	18.916	18.988	0	1245	55	0.87076044	0.033143222	0.87076044	353.1127	0	13.440308						99	4	3	NaN	NaN	NaN	0.2345	1	13176	13176		23.118	6.5334	1	15709			27698	2498	15926	16381	22130	22130					0.006562337467130419
TYQQVQQTL	9	Unmodified	_TYQQVQQTL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7852955241001	2	554.785296	1107.55604	1.5079	0.00083658	-2.9481	-0.0016356	-1.4402	-0.00079898	554.7841577059763	18.962	0.14406	18.948	18.924	19.068	-0.014059	1242	85	0.87260187	0.05152273	0.8710824	353.85944	0	20.893585						199	7	4	NaN	NaN	NaN	0.12866	1	12801	12801		31.675	7.1134	1	28471			27699	2498	15926	16381	22131	22131					0.006562337467130419
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8169300035	2	621.81693	1241.61931	2.4076	0.0014971	-2.4802	-0.0015422	-0.072568	-4.5124E-05	621.8150647447706	25.708	0.26542	25.708	25.66	25.926	0	1146	106	0.93142134	0.06419855	0.93142134	377.2104	0	25.99936						981	12	5	NaN	NaN	NaN	0.00019272	1	17571	17571		117.26	50.781	1	672800			27700	4933	15927	16382	22132	22132					0.008162192546024016
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.8169300035	2	621.81693	1241.61931	2.2203	0.0013807	-1.628	-0.0010123	0.59238	0.00036835	621.8156072710973	25.732	0.28957	25.721	25.6	25.89	-0.0116	1146	91	0.93142134	0.055012465	0.9299019	377.2104	0	22.279144						818	13	6	NaN	NaN	NaN	7.9125E-08	1	16826	16826		138.61	66.182	1	623590			27701	4933	15927	16382	22133	22133					0.008162192546024016
TYQRWQFTL	9	Unmodified						0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	621.81693	1241.61931	1.6434	0.0010219	-5.7185	-0.0035559	-4.0751	-0.002534	621.8122821965105	25.925	0.12067	25.914	25.914	26.034	-0.0116	1146	79	0.93142134	0.047682643	0.9299019	377.2104		19.3107	0.10267	-0.0030191	-0.00075972	NaN	117.26	227	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34816			27702	4933	15927	16382							0.008162192546024016
TYQSIAIVF	9	Unmodified	_TYQSIAIVF_					0	0	0		ENST00000493008.1_1_10:32096588-32098081:-|nuORF;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	ENST00000493008.1_1_10:32096588-32098081:-|nuORF	ENST00000493008.1_1_10:32096588-32098081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5615236675999	1	1041.56152	1040.55425	1.1775	0.0012264	-4.8936	-0.005097	-3.7162	-0.0038706	1041.55372247292	31.017	0.12071	31.012	30.988	31.109	-0.0050716	153	94	1.5281296	0.054884195	1.5266101	310.09424	0	11.137329						241	6	3	NaN	NaN	NaN	0.33629	1	10021	10021		16.584	0	1	27420			27703	4397	15928	16383	22134	22134					0.035592247287468126
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7931205562	2	555.793121	1109.57169	1.7279	0.00096037	-0.32249	-0.00017924	1.4054	0.00078113	555.7925742500131	18.82	0.096041	18.82	18.796	18.892	0	1233	34	0.87812483	0.020250916	0.87812483	356.09116	0	8.212006						85	5	3	NaN	NaN	NaN	0.27507	1	13260	13260		20.513	1.395	1	16763			27704	2715	15929	16384	22135	22135					0.021285202637500333
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.7931205562	2	555.793121	1109.57169	1.5956	0.00088682	0.27323	0.00015186	1.8688	0.0010387	555.7939021737009	18.866	0.12014	18.852	18.78	18.9	-0.014059	1236	67	0.876284	0.04050398	0.8747646	355.3447	0	16.424896						182	6	3	NaN	NaN	NaN	0.090258	1	12884	12884		37.231	7.6325	1	23082			27705	2715	15929	16384	22136	22136					0.021285202637500333
TYQTIIELF	9	Unmodified	_TYQTIIELF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF;ARHGAP35|p.I1429M|1|0.22|ENSG00000160007|chr19:47000475-47000475|C/G|missense_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3027897855	2	564.30279	1126.59103	1.9821	0.0011185	-2.3653	-0.0013347	-0.38317	-0.00021622	564.3010087091802	34.541	0.12066	34.541	34.493	34.614	0	1221	52	0.885486	0.031276584	0.885486	359.00967	0	12.680725						193	6	3	NaN	NaN	NaN	0.03618	1	13971	13971		52.78	17.483	1	38495			27706	4042	15930	16385	22137	22137					0.03279476554644134
TYQTIIELF	9	Unmodified	_TYQTIIELF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF;ARHGAP35|p.I1429M|1|0.22|ENSG00000160007|chr19:47000475-47000475|C/G|missense_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3027897855	2	564.30279	1126.59103	1.1398	0.00064322	0.41173	0.00023234	1.5516	0.00087556	564.3026779704982	34.54	0.12062	34.539	34.491	34.612	-0.00064468	1218	49	0.8873258	0.029438376	0.8858064	359.75558	0	11.935425						190	6	4	NaN	NaN	NaN	0.026469	1	13525	13525		63.731	30.305	1	35167			27707	4042	15930	16385	22138	22138					0.03279476554644134
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2844000671	2	521.2844	1040.55425	1.2341	0.00064333	-1.7427	-0.00090842	-0.50853	-0.00026509	521.2833873289952	30.608	0.14481	30.608	30.584	30.728	0	1308	82	0.83204526	0.04979825	0.83204526	337.67972	0	20.210266						289	7	3	NaN	NaN	NaN	0.011693	1	10238	10238		87.778	45.461	1	43851			27708	640	15931	16386	22139	22139					0.035592247287468126
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.5615236675999	1	1041.56152	1040.55425	1.4481	0.0015082	0.3688	0.00038412	1.8169	0.0018924	1041.5620601810401	30.632	0.16896	30.632	30.584	30.753	0	126	139	1.544062	0.08147144	1.544062	313.3273	0	16.532501						437	8	3	NaN	NaN	NaN	0.041983	1	10241	10241		50.315	19.705	1	126270			27709	640	15931	16386	22140	22140					0.035592247287468126
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2844000671	2	521.2844	1040.55425	1.0866	0.00056643	-1.8359	-0.00095705	-0.74934	-0.00039062	521.2834714486147	30.607	0.14477	30.601	30.577	30.722	-0.0057545	1311	97	0.83019954	0.059004188	0.8286801	336.93063	0	23.946442						294	7	4	NaN	NaN	NaN	0.015029	1	10022	10022		78.289	28.328	1	44472			27710	640	15931	16386	22141	22141					0.035592247287468126
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.5615236675999	1	1041.56152	1040.55425	1.2894	0.001343	1.1814	0.0012305	2.4708	0.0025735	1041.5630435159433	30.607	0.19304	30.601	30.553	30.746	-0.0057545	126	118	1.544062	0.06905532	1.5425426	313.3273	0	14.01297						399	9	2	NaN	NaN	NaN	0.032689	1	10026	10026		55.592	24.982	1	134780			27711	640	15931	16386	22142	22142					0.035592247287468126
TYQYARVIVYN	11	Unmodified	_TYQYARVIVYN_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.3617016479001	2	695.361702	1388.70885	1.766	0.001228	-11.69	-0.0081288	-9.9241	-0.0069008	695.353612915265	26.094	0.14482	26.083	25.987	26.131	-0.011137	1077	40	0.9735726	0.023793817	0.9720532	393.82138	0	9.624878						122	7	3	NaN	NaN	NaN	0.66717	1	19040	19040		9.6116	3.1817	1	11093	+		27712	9080	15932	16387	22143	22143					0.03004429143334164
TYQYARVIVYN	11	Unmodified						0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	695.361702	1388.70885	1.766	0.001228	-11.69	-0.0081288	-9.9241	-0.0069008	695.353612915265	26.094	0.14482	26.083	25.987	26.131	-0.011137	1077	40	0.9735726	0.023793817	0.9720532	393.82138		9.624878	0.0064029	-0.0022055	-0.0016749	NaN	9.6116	122	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11093	+		27713	9080	15932	16387							0.03004429143334164
TYRGVDLDQLL	11	Unmodified	_TYRGVDLDQLL_					0	0	0		ENST00000586686.6_1_19:1438424-1438889:+|nuORF;ENST00000591032.1_1_19:1438424-1439963:+|nuORF;ENSG00000115268|ENST00000592588|RPS15	ENST00000586686.6_1_19:1438424-1438889:+|nuORF	ENST00000586686.6_1_19:1438424-1438889:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8458844082	2	646.845884	1291.67722	1.5796	0.0010218	-4.8145	-0.0031142	-3.2349	-0.0020925	647.3424573526879	27.446	0.096556	27.446	27.422	27.519	0	1119	61	0.9479278	0.03664732	0.9479278	383.73157	0	14.835236						81	5	2	NaN	NaN	NaN	0.72005	1	18621	18621		6.1406	0.69068	1	10341			27714	2007	15933	16388	22144	22144					0.043044363893841364
TYRHFPQP	8	Unmodified	_TYRHFPQP_					0	0	0		ENST00000359646.1_1_20:34242778-34242829:-|nuORF	ENST00000359646.1_1_20:34242778-34242829:-|nuORF	ENST00000359646.1_1_20:34242778-34242829:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2643333270001	2	523.264333	1044.51411	0.79839	0.00041777	2.0556	0.0010756	2.8539	0.0014934	523.2656918908018	32.272	0.21719	32.268	32.196	32.413	-0.0037613	1263	100	0.85970795	0.060792148	0.8581885	348.88913	0	24.670837						247	10	2	NaN	NaN	NaN	0.75561	1	10186	10186		15.175	2.1725	1	19621			27715	6592	15934	16389	22145	22145					-0.006362771511248866
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant	BAIAP2L1|p.T228Vfs*8|1|0.03|ENSG00000006453|chr7:98312223-98312224|-/CCCCTTTATTACT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.2793230767	2	594.279323	1186.54409	0.59194	0.00035178	-3.849	-0.0022874	-3.2571	-0.0019356	594.2782181710224	20.863	0.21667	20.849	20.752	20.969	-0.014088	1215	70	0.8891654	0.042301655	0.88764596	360.28116	0	17.140198						245	10	3	NaN	NaN	NaN	0.032409	1	15437	15437		55.958	31.396	1	44784			27716	62	15935	16390	22146	22146					-0.041717062681300376
TYSGALLL	8	Unmodified	_TYSGALLL_					0	0	0			REV__OR5D13|p.V147L|1|0.11|ENSG00000279761|chr11:55773876-55773876|G/T|missense_variant	REV__OR5D13|p.V147L|1|0.11|ENSG00000279761|chr11:55773876-55773876|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4716460278001	1	837.471646	836.46437	1.776	0.0014874	0.69844	0.00058492	2.4745	0.0020723	837.4721729855199	28.121	0.024124	28.112	28.088	28.112	-0.0089779	399	37	1.382264	0.021439433	1.3807446	281.38834	0	4.3644104						39	2	2	NaN	NaN	NaN	0.79379	1	5099	5099		10.052	0	1	2780.8	+		27717	13283	15936	16391	22147	22147					0.03959595120193171
TYSGYWSL	8	Unmodified	_TYSGYWSL_					0	0	0		ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	ENSG00000165118|ENST00000376344|C9orf64	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.72417532375	2	488.724175	975.433798	2.6613	0.0013007	-3.3412	-0.0016329	-0.67988	-0.00033227	488.72142396708085	15.82	0.071887	15.807	15.783	15.855	-0.012611	1332	28	0.8172735	0.01662457	0.81575406	331.9737	0	6.752838						49	4	2	NaN	NaN	NaN	0.82797	1	7594	7594		5.4659	0	1	2959.2			27718	4376	15937	16392	22148	22148					-0.05490183264851112
TYSHGNYLF	9	Unmodified	_TYSHGNYLF_					0	0	0		ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.25363125495	2	551.253631	1100.49271	1.1446	0.00063098	-4.2653	-0.0023513	-3.1207	-0.0017203	551.2512456802174	21.031	0.16846	21.031	20.959	21.127	0	1257	61	0.86339295	0.036833763	0.86339295	350.15265	0	14.93808						267	8	4	NaN	NaN	NaN	0.2961	1	12851	12851		19.164	6.1607	1	37937			27719	2411	15938	16393	22149	22149					-0.053517069705321774
TYSHGNYLF	9	Unmodified	_TYSHGNYLF_					0	0	0		ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.25363125495	2	551.253631	1100.49271	1.0252	0.00056515	-3.6231	-0.0019973	-2.5979	-0.0014321	551.2517112574135	21.031	0.14445	21.017	20.969	21.113	-0.014086	1257	79	0.86339295	0.04786837	0.8618735	350.15265	0	19.413208						255	7	3	NaN	NaN	NaN	0.16171	1	12520	12520		27.789	4.4544	1	36954			27720	2411	15938	16393	22150	22150					-0.053517069705321774
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2978417933501	2	552.297842	1102.58113	1.665	0.0009196	0.65319	0.00036075	2.3182	0.0012804	552.2984213657473	30.077	0.2655	30.077	30.053	30.318	0	1224	76	0.883646	0.046029747	0.883646	358.35794	0	18.667114						336	12	4	NaN	NaN	NaN	0.042816	1	12954	12954		49.961	28.126	1	57847			27721	4349	15939	16394	22151	22151					0.03394333339952027
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2978417933501	2	552.297842	1102.58113	1.0582	0.00058442	1.6753	0.00092529	2.7335	0.0015097	552.2993541303331	30.1	0.14481	30.094	30.045	30.19	-0.0064106	1221	94	0.885486	0.057058394	0.88396657	359.10413	0	23.13971						382	7	4	NaN	NaN	NaN	0.032826	1	12616	12616		55.413	33.578	1	63367			27722	4349	15939	16394	22152	22152					0.03394333339952027
TYSKPFHPK	9	Unmodified	_TYSKPFHPK_					0	0	0		ENST00000483500.1_1_4:74606363-74607395:+|nuORF;ENSG00000169429|ENST00000307407|CXCL8	ENST00000483500.1_1_4:74606363-74607395:+|nuORF	ENST00000483500.1_1_4:74606363-74607395:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7954662799001	2	552.795466	1103.57638	1.8776	0.0010379	-0.63043	-0.0003485	1.2472	0.00068945	552.7977060000078	17.117	0.024044	17.117	17.117	17.141	0	1236	31	0.876284	0.018410921	0.876284	355.36838	0	7.4663696						35	2	2	NaN	NaN	NaN	0.66196	1	13002	13002		2.4615	0	1	1878.2			27723	4675	15940	16395	22153	22153					0.028734491971817988
TYSLLIDGE	9	Unmodified	_TYSLLIDGE_					0	0	0		KRT27|p.C389S|1|0.18|ENSG00000171446|chr17:40777540-40777540|A/T|missense_variant	KRT27|p.C389S|1|0.18|ENSG00000171446|chr17:40777540-40777540|A/T|missense_variant	KRT27|p.C389S|1|0.18|ENSG00000171446|chr17:40777540-40777540|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.75567241740004	2	505.755672	1009.49679	1.8386	0.00092989	-9.6626	-0.0048869	-7.824	-0.003957	505.75088875047925	28.122	0.072388	28.122	28.074	28.146	0	1299	55	0.8375814	0.033214986	0.8375814	340.06308	0	13.485474						114	4	3	NaN	NaN	NaN	0.56671	1	8950	8950		6.8632	1.9535	1	10895			27724	7836	15941	16396	22154	22154					-0.00757662267460546
TYSLLPPQNP	10	Unmodified	_TYSLLPPQNP_					0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2980387586001	2	565.298039	1128.58152	2.1309	0.0012046	6.2542	0.0035355	8.3852	0.0047401	565.8038967531754	26.022	0.16899	26.011	25.987	26.156	-0.011135	1212	130	0.8910048	0.07909429	0.88948536	361.23947	0	32.06714						354	8	2	NaN	NaN	NaN	0.72631	1	13592	13592		6.2502	0.55606	1	91987			27725	1904	15942	16397	22155	22155					0.022377082691491523
TYSLLPPQNP	10	Unmodified						0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.298039	1128.58152	2.4353	0.0013767	2.4864	0.0014055	4.9216	0.0027822	565.8008045477641	26.022	0.096539	26.022	25.974	26.07	0	1212	124	0.8910048	0.0754236	0.8910048	361.23947		30.578949	0.0056709	-0.0011289	0.00075972	NaN	6.2502	351	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73640			27726	1904	15942	16397							0.022377082691491523
TYSSNCCRSHI	11	Unmodified	_TYSSNCCRSHI_					0	0	0		ENSG00000089041|ENST00000328963|P2RX7;ENST00000537312.5_1_12:121615084-121622602:+|nuORF;nc|ENSG00000089041|Q99572-6|P2RX7;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	ENSG00000089041|ENST00000328963|P2RX7	ENSG00000089041|ENST00000328963|P2RX7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.7687965676502	2	635.768797	1269.52304	1.4471	0.00092001	-6.8332	-0.0043443	-5.3861	-0.0034243	635.7638240929297	21.224	0.14449	21.21	21.162	21.306	-0.014004	1161	70	0.9222442	0.04221946	0.92072475	373.4035	0	17.094086						261	7	4	NaN	NaN	NaN	0.58731	1	17400	17400		14.854	0.42897	1	32206			27727	1029	15943	16398	22156	22156					-0.10094039639284347
TYSSSLPFLF	10	Unmodified	_TYSSSLPFLF_					0	0	0		ENST00000450602.6_1_X:148622209-148627018:+|nuORF	ENST00000450602.6_1_X:148622209-148627018:+|nuORF	ENST00000450602.6_1_X:148622209-148627018:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2949647534	2	581.294965	1160.57538	1.3271	0.00077146	-3.7067	-0.0021547	-2.3795	-0.0013832	581.2927535066648	29.087	0.21722	29.079	29.007	29.224	-0.0077229	1194	79	0.902037	0.04779601	0.9005176	365.5906	0	19.37146						292	10	2	NaN	NaN	NaN	0.56921	1	14651	14651		16.584	3.5813	1	70893			27728	7037	15944	16399	22157	22157					0.0015119003760446503
TYSSSLPFLF	10	Unmodified						0	0	0		ENST00000450602.6_1_X:148622209-148627018:+|nuORF	ENST00000450602.6_1_X:148622209-148627018:+|nuORF	ENST00000450602.6_1_X:148622209-148627018:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.294965	1160.57538	1.5891	0.00092373	-1.5111	-0.00087841	0.077963	4.532E-05	581.2930906349267	29.256	0.14477	29.256	29.232	29.377	0	1185	85	0.90755045	0.051478148	0.90755045	367.82516		20.86383	0.088722	0.001388	0.0035164	NaN	16.584	233	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22194			27729	7037	15944	16399							0.0015119003760446503
TYTDLLSVI	9	Unmodified	_TYTDLLSVI_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5561039387	1	1024.5561	1023.54883	1.428	0.001463	0.70488	0.00072219	2.1328	0.0021852	1024.5559686199292	33.504	0.12064	33.504	33.456	33.576	0	132	76	1.5405227	0.044256806	1.5405227	312.67706	0	8.982697						184	6	3	NaN	NaN	NaN	0.025843	1	9517	9517		64.55	22.765	1	22972			27730	4570	15945	16400	22158	22158					0.0379950114629537
TYTDLLSVI	9	Unmodified	_TYTDLLSVI_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5561039387	1	1024.5561	1023.54883	0.78412	0.00080337	-0.13844	-0.00014184	0.64568	0.00066153	1024.5562781810288	33.502	0.12066	33.501	33.452	33.573	-0.0018463	129	67	1.5422925	0.038939834	1.540773	313.03625	0	7.9035645						174	6	3	NaN	NaN	NaN	0.030391	1	9333	9333		58.599	14.297	1	19626			27731	4570	15945	16400	22159	22159					0.0379950114629537
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.3005814475501	2	581.300581	1160.58661	2.5458	0.0014799	-0.66881	-0.00038878	1.877	0.0010911	581.3002439331109	27.977	0.28956	27.977	27.905	28.194	0	1188	94	0.90571284	0.056972206	0.90571284	367.08032	0	23.090485						954	13	6	NaN	NaN	NaN	0.0073225	1	15177	15177		97.85	55.532	1	754430			27732	5642	15946	16401	22160	22160					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.3005814475501	2	581.300581	1160.58661	1.9456	0.001131	-0.34282	-0.00019928	1.6028	0.00093168	581.300559407991	28.025	0.26549	28.016	27.943	28.209	-0.0089779	1188	97	0.90571284	0.058806837	0.9041934	367.08032	0	23.834045						895	12	5	NaN	NaN	NaN	0.10206	1	14662	14662		35.523	12.437	1	743990			27733	5642	15946	16401	22161	22161					0.012740121317847297
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.303852418	2	614.303852	1226.59315	1.0982	0.00067461	-1.0237	-0.00062884	0.074519	4.5777E-05	614.3031187544277	19.132	0.16788	19.132	19.06	19.228	0	1185	67	0.90755045	0.040407836	0.90755045	367.59256	0	16.36673						178	8	3	NaN	NaN	NaN	0.10101	1	17149	17149		45.827	29.601	1	22243			27734	956	15947	16402	22162	22162					-0.011080947075242875
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.303852418	2	614.303852	1226.59315	1.0249	0.00062962	-0.66435	-0.00040811	0.36058	0.00022151	614.3035085894859	19.154	0.21621	19.14	19.02	19.236	-0.014141	1185	79	0.90755045	0.047744393	0.906031	367.59256	0	19.338318						227	10	3	NaN	NaN	NaN	0.41241	1	16459	16459		23.086	13.474	1	26886			27735	956	15947	16402	22163	22163					-0.011080947075242875
TYTDVTPRQFF	11	Unmodified	_TYTDVTPRQFF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	687.8380593761	2	687.838059	1373.66157	1.7874	0.0012295	-1.5182	-0.0010443	0.26921	0.00018517	687.8374291844274	24.43	0.21704	24.43	24.381	24.598	0	1107	73	0.9552588	0.04395783	0.9552588	386.45493	0	17.783356						507	10	5	NaN	NaN	NaN	1.8311E-15	1	19837	19837		118.29	77.33	1	115550			27736	956	15948	16403	22164	22164					-0.010318501276969982
TYTDVTPRQFF	11	Unmodified	_TYTDVTPRQFF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.8380593761	2	687.838059	1373.66157	1.5023	0.0010333	-1.0012	-0.00068868	0.50107	0.00034465	687.8372721619832	24.454	0.16891	24.441	24.368	24.537	-0.012749	1107	76	0.9552588	0.045786977	0.9537394	386.45493	0	18.523346						404	8	4	NaN	NaN	NaN	1.0986E-36	1	18902	18902		177.14	148.24	1	96782			27737	956	15948	16403	22165	22165					-0.010318501276969982
TYTFLKETF	9	Unmodified	_TYTFLKETF_					0	0	0		ENST00000470191.5_1_9:15845666-15971831:+|nuORF;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.2949647534	2	575.294965	1148.57538	1.7114	0.00098455	-0.64679	-0.00037209	1.0646	0.00061245	575.2940638133266	24.912	0.12067	24.912	24.864	24.985	0	1197	64	0.9001988	0.038610697	0.9001988	364.89032	0	15.650604						198	6	5	NaN	NaN	NaN	0.037557	1	14760	14760		66.481	16.52	1	64615			27738	4366	15949	16404	22166	22166					0.007031900375977784
TYTMILNLL	9	Oxidation (M)	_TYTM(Oxidation (M))ILNLL_		TYTM(1)ILNLL		TYTM(45)ILNLL	0	0	1		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2991928515501	2	549.299193	1096.58383	0.61038	0.00033528	-6.3878	-0.0035088	-5.7774	-0.0031735	549.2960471665474	33.528	0.072365	33.528	33.48	33.552	0	1200	91	0.89836043	0.05520886	0.89836043	364.3499	0	22.391174						178	4	4	NaN	NaN	NaN	0.055351	1	12706	12706		44.638	15.04	1	22908			27739	5879	15950	16405	22167	22167		600			0.03940420682579315
TYTMILNLL	9	Oxidation (M)	_TYTM(Oxidation (M))ILNLL_		TYTM(1)ILNLL		TYTM(47)ILNLL	0	0	1		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2991928515501	2	549.299193	1096.58383	0.56331	0.00030943	-3.1352	-0.0017222	-2.5719	-0.0014127	549.2973438105064	33.527	0.072388	33.525	33.476	33.549	-0.0018501	1200	79	0.89836043	0.047837377	0.896841	364.3499	0	19.40149						119	4	2	NaN	NaN	NaN	0.04947	1	12374	12374		47.136	14.683	1	21445			27740	5879	15950	16405	22168	22168		600			0.03940420682579315
TYTRHGYIF	9	Unmodified	_TYTRHGYIF_					0	0	0		ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.2905480775	2	579.290548	1156.56654	2.0699	0.0011991	-2.1937	-0.0012708	-0.1238	-7.1714E-05	579.2885559005687	17.621	0.14383	17.621	17.573	17.717	0	1179	37	0.9112251	0.022047758	0.9112251	369.3295	0	8.936218						119	7	2	NaN	NaN	NaN	0.25151	1	15036	15036		24.4	11.397	1	12468			27741	4778	15951	16406	22169	22169					-0.005477388081999379
TYTRHGYIF	9	Unmodified						0	0	0		ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	579.290548	1156.56654	2.4476	0.0014179	-1.6714	-0.00096824	0.77616	0.00044962	579.2894900625968	17.834	0.071903	17.82	17.748	17.82	-0.013786	1182	31	0.9093879	0.018371165	0.90786844	368.58484		7.446045	0.09943	0.00040175	-0.0016783	NaN	24.4	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3812.5			27742	4778	15951	16406							-0.005477388081999379
TYTSLIAGI	9	Unmodified	_TYTSLIAGI_					0	0	0			REV__ENSG00000196778|ENST00000641528|OR52K1	REV__ENSG00000196778|ENST00000641528|OR52K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.5193245019001	1	938.519325	937.512048	3.3402	0.0031348	-3.0126	-0.0028274	0.32754	0.0003074	938.5168889925316	25.37	0.048248	25.358	25.334	25.382	-0.012011	396	31	1.3840506	0.017864227	1.3825312	281.26068	0	3.6302795						36	3	2	NaN	NaN	NaN	0.66529	1	6633	6633		2.1763	0	1	2374.4	+		27743	11121	15952	16407	22170	22170					0.0407924932038668
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.7982059341001	2	533.798206	1065.58186	1.8188	0.00097088	-0.055308	-2.9523E-05	1.7635	0.00094136	533.7982546043899	21.488	0.19279	21.488	21.392	21.585	0	1221	55	0.885486	0.033114612	0.885486	359.25803	0	13.435181						181	9	3	NaN	NaN	NaN	0.11656	1	11375	11375		33.425	8.4643	1	21129			27744	2065	15953	16408	22171	22171					0.051691279890064834
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.7982059341001	2	533.798206	1065.58186	1.099	0.00058664	0.93601	0.00049964	2.035	0.0010863	533.79876887876	21.489	0.14472	21.475	21.45	21.595	-0.014006	1224	46	0.883646	0.02759695	0.88212657	358.5115	0	11.196594						122	7	3	NaN	NaN	NaN	0.35794	1	11113	11113		15.463	0.28729	1	16754			27745	2065	15953	16408	22172	22172					0.051691279890064834
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.27677200025	2	569.276772	1136.53899	2.2295	0.0012692	2.3621	0.0013447	4.5915	0.0026139	569.2786722131699	23.079	0.16863	23.079	23.031	23.2	0	1185	70	0.90755045	0.042283356	0.90755045	367.91647	0	17.141449						258	8	4	NaN	NaN	NaN	0.13999	1	14334	14334		30.035	6.9178	1	47803			27746	749	15954	16409	22173	22173					-0.023816868590984086
TYTSYLDKF	9	Unmodified						0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.276772	1136.53899	1.4565	0.00082915	3.5396	0.002015	4.9961	0.0028442	569.2774463079625	23.103	0.096376	23.09	23.065	23.162	-0.013294	1185	82	0.90755045	0.04964775	0.906031	367.91647		20.126953	0.0051092	0.00072814	-0.00075972	NaN	30.035	228	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48629			27747	749	15954	16409							-0.023816868590984086
TYTSYQVYI	9	Unmodified	_TYTSYQVYI_					0	0	0			REV__nc|ENSG00000154511|Q5T7M9-2|DIPK1A	REV__nc|ENSG00000154511|Q5T7M9-2|DIPK1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.27677200025	2	569.276772	1136.53899	1.4565	0.00082915	3.5396	0.002015	4.9961	0.0028442	569.2774463079625	23.103	0.096376	23.09	23.065	23.162	-0.013294	1185	82	0.90755045	0.04964775	0.906031	367.91647	0	20.126953						228	5	4	NaN	NaN	NaN	0.35794	1	13862	13862		15.463	0	1	48629	+		27748	10095	15955	16410	22174	22174					-0.023816868590984086
TYTVKIVAI	9	Unmodified	_TYTVKIVAI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.31041785235	2	504.310418	1006.60628	1.6325	0.00082331	-2.5633	-0.0012927	-0.93074	-0.00046938	504.3089050325168	23.923	0.14472	23.923	23.899	24.044	0	1293	49	0.84127116	0.02951479	0.84127116	341.5743	0	11.983643						170	7	4	NaN	NaN	NaN	0.040769	1	8858	8858		50.831	29.06	1	36508			27749	541	15956	16411	22175	22175					0.10324388142510088
TYTVKIVAI	9	Unmodified	_TYTVKIVAI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.31041785235	2	504.310418	1006.60628	1.3733	0.00069258	-4.0497	-0.0020423	-2.6764	-0.0013497	504.30853322226824	23.947	0.16888	23.934	23.91	24.079	-0.013048	1293	52	0.84127116	0.031357765	0.8397517	341.5743	0	12.731934						196	8	4	NaN	NaN	NaN	0.041983	1	8684	8684		50.315	16.89	1	41063			27750	541	15956	16411	22176	22176					0.10324388142510088
TYTVRTFAL	9	Unmodified	_TYTVRTFAL_					0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2952991044001	2	536.295299	1070.57605	2.3496	0.0012601	-2.2927	-0.0012296	0.05692	3.0526E-05	536.2944875836756	23.272	0.28934	23.272	23.079	23.369	0	1245	76	0.87076044	0.0460397	0.87076044	353.26257	0	18.67804						455	13	5	NaN	NaN	NaN	0.3106	1	11590	11590		18.233	1.6493	1	79716			27751	3392	15957	16412	22177	22177					0.04358029477339187
TYTVRTFAL	9	Unmodified						0	0	0		ENSG00000142949|ENST00000359947|PTPRF;nc|ENSG00000142949|P10586-2|PTPRF;ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENSG00000142949|ENST00000359947|PTPRF	ENSG00000142949|ENST00000359947|PTPRF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.295299	1070.57605	1.5851	0.00085006	-1.47	-0.00078834	0.11508	6.1717E-05	536.2946737501431	23.296	0.3136	23.283	23.09	23.403	-0.013294	1248	82	0.8689189	0.049728274	0.86739945	352.51547		20.174469	0.005161	0.00043696	-0.0016805	NaN	18.233	434	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81258			27752	3392	15957	16412							0.04358029477339187
TYTYEKLLW	9	Unmodified	_TYTYEKLLW_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.8160643362501	2	608.816064	1215.61758	1.431	0.00087121	-0.77489	-0.00047177	0.65611	0.00039945	608.8160855914925	26.456	0.21718	26.456	26.36	26.577	0	1137	49	0.9369253	0.029352665	0.9369253	379.52863	0	11.890137						201	10	3	NaN	NaN	NaN	0.10945	1	16875	16875		34.454	18.991	1	30479			27753	4590	15958	16413	22178	22178					0.01839165445994695
TYTYEKLLW	9	Unmodified						0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	608.816064	1215.61758	0.90439	0.00055061	-1.5652	-0.00095293	-0.66082	-0.00040232	608.8161059492202	26.456	0.16892	26.445	26.397	26.566	-0.011137	1137	55	0.9369253	0.033021748	0.93540585	379.52863		13.376404	-0.0057147	-0.00060559	-0.00075972	NaN	34.454	199	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29483			27754	4590	15958	16413							0.01839165445994695
TYVARPSFEE	10	Unmodified	_TYVARPSFEE_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7905778672501	2	599.790578	1197.5666	1.1717	0.0007028	-9.6995	-0.0058176	-8.5277	-0.0051148	599.7848059095256	19.226	0.14419	19.212	19.188	19.332	-0.014141	1182	64	0.9093879	0.038602352	0.90786844	368.43616	0	15.639648						122	7	2	NaN	NaN	NaN	0.5626	1	15739	15739		16.858	0.27415	1	13441	+		27755	8618	15959	16414	22179	22179					-0.024277835988414154
TYVDWHFLL	9	Unmodified	_TYVDWHFLL_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3031241365001	2	597.303124	1192.5917	0.93639	0.00055931	-5.0779	-0.003033	-4.1415	-0.0024737	597.301881650994	32.152	0.14475	32.152	32.104	32.249	0	1164	79	0.9204082	0.04771352	0.9204082	372.9187	0	19.33194						313	7	3	NaN	NaN	NaN	0.094712	1	16220	16220		36.586	21.124	1	34548			27756	2710	15960	16415	22180	22180					0.0031031599437483237
TYVDWHFLL	9	Unmodified	_TYVDWHFLL_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3031241365001	2	597.303124	1192.5917	0.39782	0.00023762	-3.4835	-0.0020807	-3.0857	-0.0018431	597.3025731600783	32.175	0.16891	32.172	32.123	32.292	-0.0037613	1128	76	0.9424274	0.045875907	0.94090796	381.84015	0	18.587402						302	8	3	NaN	NaN	NaN	0.20577	1	15606	15606		24.961	10.536	1	33736			27757	2710	15960	16415	22181	22181					0.0031031599437483237
TYVELQKEEA	10	Unmodified	_TYVELQKEEA_					0	0	0		nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF	nc|ENSG00000153187|Q00839-2|HNRNPU	nc|ENSG00000153187|Q00839-2|HNRNPU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.8714375335333	3	403.871438	1208.59248	1.403	0.00056661	-3.8754	-0.0015652	-2.4724	-0.00099854	403.86981056273953	19.468	0.11998	19.468	19.468	19.588	0	1485	25	0.72280174	0.014861703	0.72280174	439.2121	0	9.030762						54	6	2	NaN	NaN	NaN	0.68732	1	16694	16694		4.9007	0.69017	1	3945			27758	3800	15961	16416	22182	22182					-0.0034693414722823945
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8216810304001	2	560.821681	1119.62881	2.3104	0.0012957	-0.88407	-0.0004958	1.4263	0.0007999	560.8214219933511	25.298	0.21714	25.298	25.274	25.491	0	1158	118	0.92408	0.07164377	0.92408	374.6853	0	29.049286						712	10	5	NaN	NaN	NaN	0.0042638	1	13666	13666		104.2	56.717	1	363620			27759	594;13711	15962	16417	22183	22183					0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion;SYNE2-ITPK1|2|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|1|fusion	nc|ENSG00000054654|Q8WXH0|SYNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8216810304001	2	560.821681	1119.62881	2.2567	0.0012656	-1.384	-0.00077619	0.87263	0.00048939	560.8209015972845	25.322	0.26535	25.31	25.214	25.479	-0.012011	1158	100	0.92408	0.060608506	0.9225606	374.6853	0	24.57483						722	12	5	NaN	NaN	NaN	0.00065562	1	13267	13267		115.07	67.934	1	350700			27760	594;13711	15962	16417	22184	22184					0.07377987540144204
TYVFRYAAKF	10	Unmodified	_TYVFRYAAKF_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3374982701	2	633.337498	1264.66044	1.4582	0.00092355	-2.9303	-0.0018559	-1.472	-0.0009323	633.3349430149585	21.248	0.096304	21.248	21.224	21.32	0	1098	34	0.960755	0.02014625	0.960755	389.0121	0	8.157257						90	5	3	NaN	NaN	NaN	0.60059	1	18099	18099		14.854	6.5765	1	8214.4			27761	5434	15963	16418	22185	22185					0.038699802940755035
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5716944234001	1	1021.57169	1020.56442	2.2251	0.0022731	-1.48	-0.0015119	0.74515	0.00076123	1021.5703637430624	36.278	0.14462	36.278	36.254	36.398	0	159	58	1.5245869	0.033656597	1.5245869	309.45462	0	6.831482						240	7	3	NaN	NaN	NaN	0.030391	1	9399	9399		58.599	32.484	1	30628			27762	2332	15964	16419	22186	22186					0.054958324539938985
TYVGIGWLI	9	Unmodified	_TYVGIGWLI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5716944234001	1	1021.57169	1020.56442	1.8249	0.0018642	-0.96324	-0.00098402	0.86162	0.00088021	1021.5714443537445	36.3	0.19267	36.301	36.253	36.446	0.0011024	156	70	1.5263584	0.040737867	1.5248389	309.81418	0	8.268799						254	9	3	NaN	NaN	NaN	0.014943	1	9212	9212		78.398	36.938	1	29665			27763	2332	15964	16419	22187	22187					0.054958324539938985
TYVGYGVLTLF	11	Unmodified	_TYVGYGVLTLF_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.8317144004501	2	616.831714	1231.64888	0.93065	0.00057405	-2.4931	-0.0015378	-1.5624	-0.00096376	616.8308398607321	36.567	0.12049	36.567	36.543	36.663	0	1125	73	0.9442611	0.04402423	0.9442611	382.4443	0	17.830688						192	6	3	NaN	NaN	NaN	0.62851	1	17318	17318		21.771	12.025	1	16836			27764	1260	15965	16420	22188	22188					0.04231738480098102
TYVGYGVLTLF	11	Unmodified						0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.831714	1231.64888	0.9312	0.00057439	-0.43207	-0.00026651	0.49913	0.00030788	616.8319905475101	36.589	0.12051	36.591	36.543	36.663	0.0016747	1122	55	0.9460945	0.033003926	0.9445751	383.18686		13.367249	0.011914	0.0010444	0.00015701	NaN	21.771	168	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13227			27765	1260	15965	16420							0.04231738480098102
TYVHSSATI	9	Unmodified	_TYVHSSATI_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	489.74818173630007	2	489.748182	977.481811	1.615	0.00079092	0.27252	0.00013347	1.8875	0.00092439	489.7482293997326	15.077	0.12011	15.077	15.053	15.174	0	1299	43	0.8375814	0.025831044	0.8375814	340.21277	0	10.4921875						98	6	3	NaN	NaN	NaN	0.028349	1	7815	7815		61.271	36.31	1	6786.8			27766	1065	15966	16421	22189	22189					-0.007831093447975945
TYVIYAHLL	9	Unmodified	_TYVIYAHLL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;HECTD2|p.Q256H|1|0.29|ENSG00000165338|chr10:91483023-91483023|G/C|missense_variant	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8080423389001	2	546.808042	1091.60153	1.2798	0.0006998	1.418	0.00077538	2.6978	0.0014752	546.8079768119237	26.746	0.12114	26.746	26.722	26.843	0	1188	67	0.90571284	0.040447116	0.90571284	367.35263	0	16.405182						174	6	2	NaN	NaN	NaN	0.39983	1	12478	12478		13.737	5.4922	1	31563			27767	4398	15967	16422	22190	22190					0.059395039997752974
TYVKEIEVW	9	Unmodified	_TYVKEIEVW_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8082393041501	2	583.808239	1165.60193	1.8267	0.0010664	-1.3276	-0.00077504	0.49913	0.0002914	583.8073151472466	24.092	0.16895	24.092	24.044	24.213	0	1146	82	0.93142134	0.049572706	0.93142134	377.48077	0	20.090515						270	8	4	NaN	NaN	NaN	0.13999	1	15327	15327		30.035	13.451	1	49556			27768	13662	15968	16423	22191	22191					0.025748789289536944
TYVKEIEVW	9	Unmodified	_TYVKEIEVW_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8082393041501	2	583.808239	1165.60193	1.5445	0.00090167	-1.0882	-0.00063531	0.45625	0.00026636	583.8069788443203	24.116	0.12063	24.103	24.055	24.175	-0.012749	1146	64	0.93142134	0.03854823	0.9299019	377.48077	0	15.622589						233	6	4	NaN	NaN	NaN	0.057383	1	14797	14797		43.776	14.88	1	46232			27769	13662	15968	16423	22192	22192					0.025748789289536944
TYVLESLER	9	Unmodified	_TYVLESLER_					0	0	0			REV__ENST00000511979.1_1_5:138723708-138724322:-|nuORF	REV__ENST00000511979.1_1_5:138723708-138724322:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2954960696501	2	555.295496	1108.57644	1.43	0.00079408	0.49112	0.00027272	1.9211	0.0010668	555.2962739982522	20.164	0.19253	20.15	20.078	20.271	-0.014143	1206	55	0.894683	0.033103883	0.89316356	362.80972	0	13.424194						151	9	2	NaN	NaN	NaN	0.054111	1	12858	12858		45.165	4.208	1	26434	+		27770	10586	15969	16424	22193	22193					0.026494044065202615
TYVLQDWQQYF	11	Unmodified	_TYVLQDWQQYF_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.56986998976663	3	497.56987	1489.68778	1.6165	0.00080434	-7.2338	-0.0035993	-5.6172	-0.002795	497.5671795681645	23.031	0.048174	23.017	22.993	23.041	-0.013294	1359	31	0.8006399	0.018490791	0.7991205	485.47437	0	11.212006						45	3	2	NaN	NaN	NaN	0.75884	1	19540	19540		3.5945	2.4925	1	5230.5			27771	2042	15970	16425	22194	22194					-0.03747580956201091
TYVLQDWQQYF	11	Unmodified	_TYVLQDWQQYF_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.56986998976663	3	497.56987	1489.68778	1.6864	0.0008391	-5.0579	-0.0025167	-3.3715	-0.0016776	497.9007250766889	23.127	0.048182	23.114	23.09	23.138	-0.013296	1359	28	0.8006399	0.01664257	0.7991205	485.47437	0	10.09137						65	3	3	NaN	NaN	NaN	0.76975	1	19542	19542		2.0359	0	1	5316.1			27772	2042	15970	16425	22195	22195					-0.03747580956201091
TYVLQDWQQYF	11	Unmodified						0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	497.56987	1489.68778	2.0635	0.0010267	-5.3599	-0.0026669	-3.2964	-0.0016402	497.5676777706148	22.983	0.048166	22.983	22.959	23.007	0	1362	34	0.79879075	0.020343125	0.79879075	484.3531		12.335205	-0.017088	0.0012347	-0.00016487	NaN	3.5945	57	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4335			27773	2042	15970	16425							-0.03747580956201091
TYVPWPLML	9	Unmodified	_TYVPWPLML_					0	0	0		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2989958863001	2	560.298996	1118.58344	0.7696	0.00043121	-1.1776	-0.00065981	-0.408	-0.0002286	560.298239134517	38.372	0.21626	38.372	38.299	38.516	0	1218	76	0.8873258	0.046014845	0.8873258	359.7867	0	18.657745						328	10	3	NaN	NaN	NaN	0.032417	1	13626	13626		55.947	29.216	1	51737			27774	4638	15971	16426	22196	22196					0.02889045753386199
TYVPWPLML	9	Unmodified	_TYVPWPLML_					0	0	0		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2989958863001	2	560.298996	1118.58344	1.4388	0.00080615	-0.94282	-0.00052826	0.49596	0.00027789	560.2986218067409	38.369	0.19227	38.373	38.277	38.469	0.0040245	1212	70	0.8910048	0.042329073	0.88948536	361.27844	0	17.163269						314	9	4	NaN	NaN	NaN	0.02781	1	13220	13220		61.977	41.421	1	40861			27775	4638	15971	16426	22197	22197					0.02889045753386199
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(78)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.29645319735	2	568.296453	1134.57835	1.1408	0.0006483	-2.6588	-0.001511	-1.5181	-0.00086271	568.2949148747584	35.337	0.21711	35.337	35.265	35.482	0	1212	79	0.8910048	0.047842503	0.8910048	361.21646	0	19.395538						586	10	5	NaN	NaN	NaN	0.014943	1	14267	14267		78.398	44.7	1	140350			27776	4638	15971	16427	22198	22198		497			0.01644741890777368
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(78)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.29645319735	2	568.296453	1134.57835	0.89908	0.00051094	-2.8451	-0.0016169	-1.946	-0.0011059	568.2946082983362	35.312	0.28941	35.312	35.239	35.529	-4.5776E-05	1212	79	0.8910048	0.047842503	0.88948536	361.21646	0	19.395538						619	13	4	NaN	NaN	NaN	0.014943	1	13803	13803		78.398	45.945	1	141250			27777	4638	15971	16427	22199	22199		497			0.01644741890777368
TYVPWPLML	9	Oxidation (M)	_TYVPWPLM(Oxidation (M))L_		TYVPWPLM(1)L		TYVPWPLM(68)L	0	0	1		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1135.5856299281	1	1135.58563	1134.57835	1.2821	0.001456	-0.73603	-0.00083583	0.54609	0.00062013	1135.585445554763	35.312	0.072479	35.312	35.287	35.36	-4.5776E-05	60	46	1.582944	0.02647829	1.5814246	320.86893	0	5.3672485						63	4	2	NaN	NaN	NaN	0.023074	1	13804	13804		68.108	46.273	1	4361.1			27778	4638	15971	16427	22200	22200		497			0.01644741890777368
TYVRWYTQL	9	Unmodified	_TYVRWYTQL_					0	0	0		ENST00000482889.1_1_1:109472820-109486481:-|nuORF;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	ENST00000482889.1_1_1:109472820-109486481:-|nuORF	ENST00000482889.1_1_1:109472820-109486481:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	615.3193055169501	2	615.319306	1228.62406	0.85605	0.00052675	-2.6781	-0.0016479	-1.8221	-0.0011211	615.3179871904827	24.406	0.28942	24.406	24.357	24.647	0	1146	94	0.93142134	0.05684316	0.93142134	377.25424	0	23.023224						570	13	4	NaN	NaN	NaN	0.039271	1	17211	17211		51.467	27.067	1	85375			27779	2309	15972	16428	22201	22201					0.018891033973659432
TYVRWYTQL	9	Unmodified	_TYVRWYTQL_					0	0	0		ENST00000482889.1_1_1:109472820-109486481:-|nuORF;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	ENST00000482889.1_1_1:109472820-109486481:-|nuORF	ENST00000482889.1_1_1:109472820-109486481:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3193055169501	2	615.319306	1228.62406	0.91913	0.00056556	-2.1401	-0.0013168	-1.2209	-0.00075127	615.3175076499347	24.429	0.26544	24.417	24.296	24.561	-0.012749	1143	100	0.9332562	0.060517013	0.93173677	377.9974	0	24.511261						500	12	4	NaN	NaN	NaN	0.045904	1	16511	16511		48.65	22.849	1	75185			27780	2309	15972	16428	22202	22202					0.018891033973659432
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7842328916	2	534.784233	1067.55391	1.1941	0.0006386	-2.0364	-0.001089	-0.84223	-0.00045041	534.7832007628422	33.745	0.19304	33.745	33.697	33.89	0	1245	49	0.87076044	0.029463828	0.87076044	353.2753	0	11.953735						239	9	4	NaN	NaN	NaN	0.023828	1	11447	11447		67.154	39.858	1	43615			27781	2414	15973	16429	22203	22203					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5611893166	1	1068.56119	1067.55391	1.3636	0.0014571	-0.93843	-0.0010028	0.42519	0.00045434	1068.559564334399	33.745	0.19304	33.745	33.697	33.89	0	90	121	1.5652816	0.070717216	1.5652816	317.52817	0	14.345459						526	9	3	NaN	NaN	NaN	0.00017726	1	11449	11449		118.2	73.039	1	179840			27782	2414	15973	16429	22204	22204					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7842328916	2	534.784233	1067.55391	0.38056	0.00020352	-0.90952	-0.0004864	-0.52897	-0.00028288	534.783298925053	33.744	0.16899	33.742	33.694	33.863	-0.0018463	1242	58	0.87260187	0.03499019	0.8710824	354.02234	0	14.195801						250	8	4	NaN	NaN	NaN	0.10956	1	11180	11180		34.439	20.014	1	42183			27783	2414	15973	16429	22205	22205					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		ENST00000478443.1_1_17:20910195-20914666:-|nuORF;nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	ENST00000478443.1_1_17:20910195-20914666:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5611893166	1	1068.56119	1067.55391	0.77467	0.00082778	0.45926	0.00049075	1.2339	0.0013185	1068.5619139421774	33.744	0.14485	33.742	33.694	33.839	-0.0018463	87	118	1.5670487	0.068938255	1.5655292	317.88663	0	13.984619						445	7	3	NaN	NaN	NaN	3.1485E-12	1	11182	11182		151.06	95.563	1	164000			27784	2414	15973	16429	22206	22206					0.02283805008892159
TYVSGMLRF	9	Unmodified	_TYVSGMLRF_					0	0	0		ENST00000550385.1_1_12:102090725-102108674:+|nuORF;nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2760521062502	2	537.276052	1072.53755	1.8682	0.0010037	-1.4946	-0.000803	0.37363	0.00020074	537.275868308036	25.057	0.24128	25.057	24.96	25.202	0	1251	61	0.8670771	0.036849678	0.8670771	351.76007	0	14.949341						223	11	3	NaN	NaN	NaN	0.11656	1	11664	11664		33.425	21.377	1	31220			27785	1824	15974	16430	22207	22207					0.004184005711749705
TYVSNLTRSMS	11	Unmodified	_TYVSNLTRSMS_					0	0	0		nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-2|GPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8084446569	2	629.808445	1257.60234	1.2651	0.00079676	6.1083	0.0038471	7.3734	0.0046438	629.8128234593717	24.478	0.096506	24.478	24.43	24.526	0	1140	52	0.93509084	0.031185508	0.93509084	378.6435	0	12.627869						119	5	3	NaN	NaN	NaN	0.62612	1	17946	17946		12.307	4.6241	1	11639			27786	5779	15975	16431	22208	22208					-0.01616069413535115
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7998829558001	2	524.799883	1047.58521	1.0357	0.00054351	-0.082477	-4.3284E-05	0.95317	0.00050023	524.799675588105	32.707	0.12065	32.707	32.659	32.78	0	1239	43	0.87444305	0.025778055	0.87444305	354.85544	0	10.460907						141	6	4	NaN	NaN	NaN	0.14301	1	10544	10544		29.598	18.993	1	15349			27787	1944	15976	16432	22209	22209					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.592489445	1	1048.59249	1047.58521	2.2839	0.0023949	-0.024724	-2.5925E-05	2.2592	0.002369	1048.5926259015976	32.707	0.28958	32.707	32.635	32.925	0	141	190	1.5352125	0.11152744	1.5352125	311.50418	0	22.629608						1343	13	4	NaN	NaN	NaN	0.0062755	1	10545	10545		99.986	41.387	1	584210			27788	1944	15976	16432	22210	22210					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7998829558001	2	524.799883	1047.58521	0.86585	0.0004544	-1.2322	-0.00064666	-0.36634	-0.00019226	524.799077796307	32.682	0.12067	32.679	32.655	32.776	-0.0031052	1236	46	0.876284	0.027620852	0.8747646	355.60254	0	11.20874						153	6	3	NaN	NaN	NaN	0.27442	1	10329	10329		20.555	6.5139	1	18687			27789	1944	15976	16432	22211	22211					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.592489445	1	1048.59249	1047.58521	1.8468	0.0019366	-0.63965	-0.00067073	1.2072	0.0012658	1048.5919307718882	32.706	0.31373	32.703	32.607	32.92	-0.0031052	138	211	1.5369828	0.12396538	1.5354633	311.86337	0	25.15335						1315	14	5	NaN	NaN	NaN	2.9468E-07	1	10330	10330		130.62	72.02	1	583030			27790	1944	15976	16432	22212	22212					0.06332378042998243
TYVVCDGLEEQ	11	Unmodified	_TYVVCDGLEEQ_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-4|GTDC1	REV__nc|ENSG00000121964|Q4AE62-4|GTDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.1885492828333	3	419.188549	1254.54382	1.4277	0.00059847	-1.4389	-0.00060317	-0.011196	-4.6933E-06	419.18707437633435	29.569	0.072393	29.562	29.538	29.61	-0.0070667	1542	28	0.6874725	0.016753078	0.6859531	417.5717	0	10.175842						53	4	2	NaN	NaN	NaN	0.48069	1	17118	17118		10.204	1.9262	1	3764	+		27791	13110	15977	16433	22213	22213					-0.07327170778648906
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.27677200025	2	575.276772	1148.53899	2.0283	0.0011668	0.46783	0.00026913	2.4961	0.001436	575.2764020021161	28.026	0.19304	28.026	27.977	28.17	0	1194	70	0.902037	0.042278767	0.902037	365.63556	0	17.137482						447	9	5	NaN	NaN	NaN	0.01966	1	14751	14751		72.428	41.818	1	138900			27792	2303;7116	15978	16434	22214	22214					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1149.5462675339	1	1149.54627	1148.53899	3.2721	0.0037615	-0.6906	-0.00079388	2.5815	0.0029676	1149.5456316771906	28.026	0.31369	28.026	27.977	28.291	0	57	223	1.5847093	0.13097978	1.5847093	321.1798	0	26.546234						974	14	5	NaN	NaN	NaN	1.1376E-46	1	14752	14752		194.62	141.99	1	292900			27793	2303;7116	15978	16434	22215	22215					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1149.5462675339	1	1149.54627	1148.53899	2.2033	0.0025328	-0.50226	-0.00057738	1.7011	0.0019555	1149.5456661537714	28.025	0.21723	28.016	27.992	28.209	-0.0089779	57	211	1.5847093	0.123886585	1.5831898	321.17978	0	25.108612						865	10	4	NaN	NaN	NaN	2.0329E-35	1	14253	14253		180.01	113.46	1	178210			27794	2303;7116	15978	16434	22216	22216					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.27677200025	2	575.276772	1148.53899	1.2707	0.00073098	0.52217	0.00030039	1.7928	0.0010314	575.276811055068	28.025	0.24129	28.016	27.943	28.185	-0.0089779	1191	76	0.90387505	0.04595518	0.9023556	366.38058	0	18.627686						560	11	5	NaN	NaN	NaN	0.019103	1	14254	14254		73.133	36.546	1	203990			27795	2303;7116	15978	16434	22217	22217					-0.02933686859091722
TYWDRMHLF	9	Unmodified	_TYWDRMHLF_					0	0	0		nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;ENST00000497340.1_1_22:32293629-32302800:+|nuORF	nc|ENSG00000100150|O75140-1|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.79768300535	2	634.797683	1267.58081	2.0931	0.0013287	-3.7429	-0.002376	-1.6497	-0.0010473	634.7951716642402	25.684	0.16893	25.684	25.588	25.757	0	1140	82	0.93509084	0.04952991	0.93509084	378.61118	0	20.05429						247	8	3	NaN	NaN	NaN	0.42817	1	18176	18176		12.57	2.5181	1	22604			27796	1201	15979	16435	22218	22218					-0.04227409651571179
TYWDRMHLF	9	Unmodified	_TYWDRMHLF_					0	0	0		nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;ENST00000497340.1_1_22:32293629-32302800:+|nuORF	nc|ENSG00000100150|O75140-1|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.5342141591	3	423.534214	1267.58081	1.8682	0.00079124	-3.3052	-0.0013998	-1.437	-0.0006086	423.5322982712126	25.66	0.072401	25.66	25.636	25.708	0	1452	31	0.74322224	0.018552959	0.74322224	451.38367	0	11.267853						93	4	3	NaN	NaN	NaN	0.1507	1	18177	18177		25.694	16.775	1	7022			27797	1201	15979	16435	22219	22219					-0.04227409651571179
TYWDRMHLF	9	Unmodified						0	0	0		nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;ENST00000497340.1_1_22:32293629-32302800:+|nuORF	nc|ENSG00000100150|O75140-1|DEPDC5	nc|ENSG00000100150|O75140-1|DEPDC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	634.797683	1267.58081	2.4103	0.00153	-3.1698	-0.0020122	-0.75957	-0.00048217	635.2956238820542	25.66	0.048248	25.648	25.624	25.672	-0.011602	1137	64	0.9369253	0.038523257	0.93540585	379.3539		15.597778	-0.018007	0.00056564	0.0001575	NaN	12.57	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5841.9			27798	1201	15979	16435							-0.04227409651571179
TYYRGFLTL	9	Unmodified	_TYYRGFLTL_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3031241365001	2	567.303124	1132.5917	2.5151	0.0014268	-0.85739	-0.0004864	1.6577	0.00094041	567.3029323264226	26.263	0.19306	26.263	26.191	26.384	0	1188	76	0.90571284	0.04592049	0.90571284	367.18686	0	18.6167						329	9	4	NaN	NaN	NaN	0.015447	1	14194	14194		77.761	35.443	1	158110			27799	3247	15980	16436	22220	22220					0.030703159943641367
TYYRGFLTL	9	Unmodified	_TYYRGFLTL_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3031241365001	2	567.303124	1132.5917	1.7829	0.0010114	-0.2026	-0.00011494	1.5802	0.00089648	567.3033712340862	26.287	0.26539	26.276	26.156	26.421	-0.011137	1188	67	0.90571284	0.040407836	0.9041934	367.18686	0	16.381836						340	12	4	NaN	NaN	NaN	0.028404	1	13744	13744		61.199	35.084	1	151240			27800	3247	15980	16436	22221	22221					0.030703159943641367
UGGAMPPP	8	Unmodified	_UGGAMPPP_					0	0	0			REV__ENSG00000113811|ENST00000495461|SELENOK	REV__ENSG00000113811|ENST00000495461|SELENOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.2502941379	1	777.250294	776.243018	2.0436	0.0015884	-2.0567	-0.0015986	-0.013107	-1.0187E-05	777.2502340061391	58.485	0.071968	58.485	58.413	58.485	0	597	34	1.2639319	0.019792676	1.2639319	257.62183	0	4.0342407						53	4	2	NaN	NaN	NaN	0.84945	1	4441	4441		0	0	0	2721.5	+		27801	9161	15981	16437	22222	22222					-0.15405411682877457
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.73761705	2	447.737617	893.460681	1.4985	0.00067093	-1.9858	-0.00088913	-0.48734	-0.0002182	447.7370075465762	13.925	0.144	13.925	13.877	14.021	0	1407	43	0.77102906	0.025931954	0.77102906	313.5885	0	10.5469055						153	7	3	NaN	NaN	NaN	0.29681	1	5976	5976		19.118	7.5699	1	12580			27802	6884	15982	16438	22223	22223					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.73761705	2	447.737617	893.460681	1.6577	0.0007422	-2.1401	-0.0009582	-0.48242	-0.000216	447.7366886817754	13.925	0.24004	13.925	13.877	14.117	0	1305	49	0.83389086	0.029530823	0.83389086	339.15527	0	12.01059						297	11	3	NaN	NaN	NaN	0.14301	1	5977	5977		29.598	9.0429	1	72312			27803	6884	15982	16438	22224	22224					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.73761705	2	447.737617	893.460681	1.1462	0.0005132	-2.2962	-0.0010281	-1.15	-0.00051491	447.7365643511549	13.925	0.21583	13.914	13.866	14.082	-0.010673	1407	46	0.77102906	0.027782738	0.7695096	313.5885	0	11.299652						130	10	2	NaN	NaN	NaN	0.29681	1	5861	5861		19.118	2.7017	1	13054			27804	6884	15982	16438	22225	22225					0.009689253463307068
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.73761705	2	447.737617	893.460681	1.2062	0.00054005	-1.4285	-0.00063958	-0.22229	-9.9529E-05	447.73730778939796	13.925	0.2398	13.914	13.866	14.106	-0.010673	1302	46	0.8357362	0.027680635	0.8342168	339.90582	0	11.258087						295	11	3	NaN	NaN	NaN	0.032417	1	5863	5863		55.947	29.216	1	72659			27805	6884	15982	16438	22226	22226					0.009689253463307068
VAAAGAGQ	8	Unmodified	_VAAAGAGQ_					0	0	0			REV__ENST00000430773.1_1_17:40264175-40264397:-|nuORF	REV__ENST00000430773.1_1_17:40264175-40264397:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3362151789001	1	644.336215	643.328939	1.6656	0.0010732	5.801	0.0037378	7.4666	0.004811	644.3398963486717	24.164	0.16899	24.164	24.116	24.285	0	630	61	1.2441287	0.036034703	1.2441287	254.49364	0	7.371109						153	8	2	NaN	NaN	NaN	0.84876	1	1861	1861		0.39566	0	1	21204	+		27806	12154	15983	16439	22227	22227					-0.006992599507498198
VAAAGAGQ	8	Unmodified						0	0	0			REV__ENST00000430773.1_1_17:40264175-40264397:-|nuORF	REV__ENST00000430773.1_1_17:40264175-40264397:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	644.336215	643.328939	1.6656	0.0010732	5.801	0.0037378	7.4666	0.004811	644.3398963486717	24.164	0.16899	24.164	24.116	24.285	0	630	61	1.2441287	0.036034703	1.2441287	254.49364		7.371109	0.0064941	-0.00026372	-0.00014091	NaN	0.39566	153	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21204	+		27807	12154	15983	16439							-0.006992599507498198
VAAASSGSA	9	Unmodified	_VAAASSGSA_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.3522591736001	1	720.352259	719.344983	1.7445	0.0012566	4.2735	0.0030785	6.018	0.0043351	720.3555916283788	26.263	0.096546	26.263	26.239	26.336	0	669	58	1.2206948	0.03427148	1.2206948	249.15059	0	6.994995						136	5	2	NaN	NaN	NaN	0.17818	1	3582	3582		26.732	0	1	17175			27808	5695	15984	16440	22228	22228					-0.02591598504511694
VAAASSGSA	9	Unmodified	_VAAASSGSA_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3522591736001	1	720.352259	719.344983	1.5704	0.0011313	4.6999	0.0033856	6.2703	0.0045168	720.3561194864972	26.263	0.1206	26.252	26.228	26.349	-0.011137	672	52	1.2188909	0.03066063	1.2173715	248.78238	0	6.258011						151	6	2	NaN	NaN	NaN	0.27442	1	3513	3513		20.555	4.1388	1	18247			27809	5695	15984	16440	22229	22229					-0.02591598504511694
VAAAVLVLL	9	Unmodified	_VAAAVLVLL_					0	0	0		ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;ENSG00000134853|ENST00000257290|PDGFRA;PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.5866162061001	1	868.586616	867.57934	1.2432	0.0010798	-0.81426	-0.00070725	0.42897	0.0003726	868.5859520207827	34.974	0.072388	34.974	34.95	35.022	-4.5776E-05	300	46	1.4411188	0.026712418	1.4395994	293.19934	0	5.4346924						70	4	2	NaN	NaN	NaN	0.36886	1	5497	5497		15.013	0	1	6513.6			27810	2902	15985	16441	22230	22230					0.14025324321983135
VAAAVLVLL	9	Unmodified						0	0	0		ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;ENSG00000134853|ENST00000257290|PDGFRA;PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	868.586616	867.57934	1.0594	0.0009202	-1.2155	-0.0010558	-0.15606	-0.00013555	868.5860731030349	34.975	0.072269	34.975	34.951	35.023	0	306	43	1.4375578	0.024930239	1.4375578	292.47482		5.072113	0.00077131	-0.00023412	-0.0010208	NaN	15.013	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5877.1			27811	2902	15985	16441							0.14025324321983135
VAAEVAGAGR	10	Unmodified	_VAAEVAGAGR_					0	0	0		ENST00000466835.5_1_2:74685568-74686813:+|nuORF;ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.7485160873	2	450.748516	899.482479	0.38339	0.00017281	-1.5223	-0.00068618	-1.1389	-0.00051337	450.74808284465723	12.772	0.096094	12.772	12.748	12.844	0	1416	40	0.76547134	0.02408886	0.76547134	311.29654	0	9.796295						88	5	2	NaN	NaN	NaN	0.5626	1	6057	6057		16.858	1.3956	1	9162.1			27812	7117	15986	16442	22231	22231					0.028717300948983393
VAAEVAGAGR	10	Unmodified	_VAAEVAGAGR_					0	0	0		ENST00000466835.5_1_2:74685568-74686813:+|nuORF;ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.7485160873	2	450.748516	899.482479	0.90502	0.00040794	-1.4581	-0.00065722	-0.55303	-0.00024928	450.7477605096228	12.774	0.16793	12.765	12.741	12.909	-0.00947	1419	40	0.76361835	0.024086237	0.7620989	310.54297	0	9.795227						105	8	3	NaN	NaN	NaN	0.085203	1	5941	5941		48.002	5.6846	1	10403			27813	7117	15986	16442	22232	22232					0.028717300948983393
VAAGGSHA	8	Unmodified	_VAAGGSHA_					0	0	0			REV__ENST00000334166.8_1_2:150187138-150305584:+|nuORF	REV__ENST00000334166.8_1_2:150187138-150305584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.331464152	1	669.331464	668.324188	1.0138	0.00067856	-3.795	-0.0025401	-2.7812	-0.0018616	669.3298662819321	30.97	0.072439	30.97	30.946	31.018	0	1095	37	0.9625867	0.021978915	0.9625867	196.74942	0	4.492401						44	4	2	NaN	NaN	NaN	0.84876	1	2552	2552		0.39566	0	1	3542.8	+		27814	11754	15987	16443	22233	22233					-0.023241440935294122
VAAGPCPL	8	Unmodified	_VAAGPCPL_					0	0	0		ENSG00000118162|ENST00000338134|KPTN	ENSG00000118162|ENST00000338134|KPTN	ENSG00000118162|ENST00000338134|KPTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3807225305001	1	727.380723	726.373446	0.85234	0.00061998	1.4312	0.001041	2.2835	0.001661	727.3819145822009	33.309	0.14477	33.307	33.259	33.403	-0.0024757	747	46	1.1737292	0.027134776	1.1722097	239.52133	0	5.5373535						115	7	2	NaN	NaN	NaN	0.84876	1	3626	3626		0.39566	0	1	9576.8			27815	2166	15988	16444	22234	22234					-0.0006857212893010001
VAAGPNPT	8	Unmodified	_VAAGPNPT_					0	0	0		ENST00000484207.5_1_14:96131359-96134831:+|nuORF	ENST00000484207.5_1_14:96131359-96134831:+|nuORF	ENST00000484207.5_1_14:96131359-96134831:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3780799936	1	726.37808	725.370804	1.2381	0.00089933	-2.1561	-0.0015662	-0.91803	-0.00066683	726.376183522854	37.624	0.21651	37.627	37.555	37.771	0.0028229	624	46	1.247731	0.027015924	1.2462115	254.6293	0	5.5132446						147	10	2	NaN	NaN	NaN	0.84876	1	3609	3609		0.39566	0	1	11004			27816	7228	15989	16445	22235	22235					-0.0028670426224834955
VAAGSYQRF	9	Unmodified	_VAAGSYQRF_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.7563411194	2	499.756341	997.498129	1.6988	0.00084899	-0.31968	-0.00015976	1.3791	0.00068923	499.755521405219	15.702	0.09604	15.702	15.654	15.75	0	1344	40	0.8098828	0.02402109	0.8098828	328.87042	0	9.754272						80	5	2	NaN	NaN	NaN	0.31471	1	8476	8476		17.97	1.3855	1	6952.4			27817	4076	15990	16446	22236	22236					-0.0007198338804528248
VAAKDVVM	8	Unmodified	_VAAKDVVM_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.7334887998	2	416.733489	831.452425	1.7844	0.00074361	-1.553	-0.00064718	0.23139	9.6426E-05	416.7327922613883	16.083	0.16783	16.07	16.023	16.19	-0.012611	1404	43	0.77288127	0.025931954	0.7713618	314.69632	0	10.558777						186	8	3	NaN	NaN	NaN	0.75347	1	5042	5042		20.449	9.8437	1	26394			27818	2935	15991	16447	22237	22237					0.0299565510534876
VAALLFRG	8	Unmodified	_VAALLFRG_					0	0	0			REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.76343787	2	423.763438	845.512323	1.8633	0.00078961	-3.2063	-0.0013587	-1.343	-0.00056911	423.76187972219714	25.708	0.072359	25.708	25.684	25.757	0	1374	94	0.791392	0.05736792	0.791392	322.14648	0	23.352386						108	4	2	NaN	NaN	NaN	0.80071	1	5335	5335		9.1232	0.83292	1	21142	+		27819	12984	15992	16448	22238	22238					0.08338713830892175
VAALLFRG	8	Unmodified						0	0	0			REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	423.763438	845.512323	1.8633	0.00078961	-3.2063	-0.0013587	-1.343	-0.00056911	423.76187972219714	25.708	0.072359	25.708	25.684	25.757	0	1374	94	0.791392	0.05736792	0.791392	322.14648		23.352386	-0.030252	-0.0004448	0.0016848	NaN	9.1232	108	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21142	+		27820	12984	15992	16448							0.08338713830892175
VAALVSSS	8	Unmodified	_VAALVSSS_					0	0	0			REV__nc|ENSG00000167972|Q99758-2|ABCA3	REV__nc|ENSG00000167972|Q99758-2|ABCA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.4090457710001	1	733.409046	732.401769	0.064318	4.7172E-05	8.5146	0.0062447	8.5789	0.0062918	733.4149012109748	56.611	0.047859	56.61	56.586	56.634	-0.00056458	507	37	1.3178225	0.021519542	1.316303	268.88522	0	4.3907776						53	3	2	NaN	NaN	NaN	0.84876	1	3715	3715		0.39566	0	1	4903.3	+		27821	10490	15993	16449	22239	22239					0.0248644905201445
VAALYEVL	8	Unmodified	_VAALYEVL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	877.5029461562	1	877.502946	876.49567	1.0411	0.00091354	0.4315	0.00037864	1.4726	0.0012922	877.5031331559724	30.97	0.19308	30.97	30.922	31.115	0	399	79	1.382264	0.04644203	1.382264	281.18054	0	9.447266						260	9	3	NaN	NaN	NaN	0.46176	1	5759	5759		33.137	4.4704	1	42738	+		27822	9113	15994	16450	22240	22240					0.05248168154275845
VAAPADPEM	9	Unmodified	_VAAPADPEM_					0	0	0		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.4131448709	1	900.413145	899.405868	2.2263	0.0020046	0.25312	0.00022791	2.4795	0.0022325	900.41403974626	18.772	0.12	18.772	18.724	18.844	0	420	79	1.3697531	0.046506286	1.3697531	278.52588	0	9.4566345						216	6	3	NaN	NaN	NaN	0.12328	1	6049	6049		32.453	13.334	1	19747			27823	491	15995	16451	22241	22241					-0.04785829516595186
VAAPADPEM	9	Unmodified	_VAAPADPEM_					0	0	0		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.4131448709	1	900.413145	899.405868	1.929	0.0017369	-0.056221	-5.0622E-05	1.8728	0.0016863	900.4132742298726	18.77	0.096048	18.756	18.731	18.828	-0.014059	417	79	1.3715409	0.046501517	1.3700215	278.8894	0	9.455627						200	5	3	NaN	NaN	NaN	0.002833	1	5935	5935		108.51	53.016	1	18961			27824	491	15995	16451	22242	22242					-0.04785829516595186
VAAPADPEM	9	Oxidation (M)	_VAAPADPEM(Oxidation (M))_		VAAPADPEM(1)		VAAPADPEM(53)	0	0	1		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	916.4080594930001	1	916.408059	915.400783	1.7191	0.0015754	1.0846	0.0009939	2.8037	0.0025693	916.409044275801	15.51	0.096062	15.51	15.462	15.558	0	420	82	1.3697531	0.048297644	1.3697531	278.4525	0	9.818268						167	5	2	NaN	NaN	NaN	0.036546	1	6321	6321		52.624	22.014	1	15077			27825	491	15995	16452	22243	22243		43			-0.06030133379204017
VAAPADPEM	9	Oxidation (M)	_VAAPADPEM(Oxidation (M))_		VAAPADPEM(1)		VAAPADPEM(81)	0	0	1		ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	916.4080594930001	1	916.408059	915.400783	1.7933	0.0016434	0.82797	0.00075876	2.6212	0.0024021	916.4085400949785	15.484	0.11985	15.472	15.448	15.568	-0.012201	417	82	1.3715409	0.048297644	1.3700215	278.81595	0	9.818268						180	6	2	NaN	NaN	NaN	0.014046	1	6202	6202		80.639	46.2	1	15120			27826	491	15995	16452	22244	22244		43			-0.06030133379204017
VAAQKWHSAES	11	Unmodified	_VAAQKWHSAES_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.30164408005	2	607.301644	1212.58874	1.6555	0.0010054	-11.069	-0.0067221	-9.4134	-0.0057167	607.2976427736864	23.103	0.12051	23.103	23.055	23.176	0	1173	61	0.91489893	0.03673041	0.91489893	370.61664	0	14.87912						172	6	3	NaN	NaN	NaN	0.7072	1	16789	16789		6.9844	0.12115	1	18807	+		27827	10326	15996	16453	22245	22245					-0.00905559130455913
VAARAAAA	8	Unmodified	_VAARAAAA_					0	0	0			REV__ENST00000494188.1_1_2:65357039-65357216:-|nuORF	REV__ENST00000494188.1_1_2:65357039-65357216:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.7086626452999	2	350.708663	699.402772	2.8763	0.0010088	-3.5591	-0.0012482	-0.68271	-0.00023943	350.7073652737191	18.29	0.023932	18.276	18.252	18.276	-0.01395	1422	55	0.7617651	0.033370078	0.7602457	311.1181	0	13.628906						44	2	2	NaN	NaN	NaN	0.84887	1	3148	3148		0.32989	0	1	4410.7	+		27828	12483	15997	16454	22246	22246					0.041047082115483136
VAARLAQQ	8	Unmodified	_VAARLAQQ_					0	0	0		ENST00000474969.5_1_2:86385703-86422514:-|nuORF;IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	ENST00000474969.5_1_2:86385703-86422514:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.75360146519995	2	428.753601	855.49265	1.8333	0.00078602	1.1999	0.00051447	3.0332	0.0013005	428.75418233800565	25.708	0.12062	25.708	25.684	25.805	0	1380	88	0.7876915	0.053643525	0.7876915	320.5804	0	21.832245						190	6	3	NaN	NaN	NaN	0.74229	1	5476	5476		16.417	2.3751	1	39720			27829	2746	15998	16455	22247	22247					0.05912337820120683
VAASGTQF	8	Unmodified	_VAASGTQF_					0	0	0		ENST00000543190.5_1_12:6494193-6494280:+|nuORF	ENST00000543190.5_1_12:6494193-6494280:+|nuORF	ENST00000543190.5_1_12:6494193-6494280:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	780.3886446799	1	780.388645	779.381368	1.644	0.0012829	8.2773	0.0064595	9.9212	0.0077424	780.3953435366751	29.57	0.12064	29.57	29.522	29.642	0	525	64	1.3070582	0.037693262	1.3070582	266.3934	0	7.682312						243	6	4	NaN	NaN	NaN	0.72043	1	4478	4478		17.78	1.3637	1	25171			27830	7508	15999	16456	22248	22248					-0.01714721607811498
VAATVQNRF	9	Unmodified	_VAATVQNRF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.27744070225003	2	503.277441	1004.54033	1.6673	0.00083914	-0.99776	-0.00050215	0.66959	0.00033699	503.2771467034287	15.75	0.11996	15.75	15.726	15.846	0	1326	40	0.8209676	0.024010658	0.8209676	333.33987	0	9.749115						96	6	2	NaN	NaN	NaN	0.14787	1	8773	8773		28.896	11.097	1	11333			27831	3097	16000	16457	22249	22249					0.038239920203295696
VAATVQNRF	9	Unmodified	_VAATVQNRF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.27744070225003	2	503.277441	1004.54033	1.8191	0.00091551	-1.8308	-0.00092139	-0.011672	-5.8743E-06	503.2762569242047	15.748	0.14371	15.735	15.711	15.855	-0.012611	1326	37	0.8209676	0.022162437	0.81944823	333.33987	0	8.998688						120	7	3	NaN	NaN	NaN	0.21199	1	8599	8599		24.562	10.52	1	12555			27832	3097	16000	16457	22250	22250					0.038239920203295696
VAAVAGLL	8	Unmodified	_VAAVAGLL_					0	0	0			REV__ENSG00000165282|ENST00000378617|PIGO	REV__ENSG00000165282|ENST00000378617|PIGO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.4556020331	1	713.455602	712.448326	0.82324	0.00058734	1.1791	0.00084123	2.0023	0.0014286	713.4562930825958	30.656	0.096548	30.656	30.608	30.704	0	543	49	1.296287	0.028732419	1.296287	264.62723	0	5.865509						96	5	2	NaN	NaN	NaN	0.77734	1	3473	3473		12.26	0	1	10111	+		27833	10376	16001	16458	22251	22251					0.08059933673939668
VAAVITITF	9	Unmodified	_VAAVITITF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5607953860999	1	934.560795	933.553519	1.4222	0.0013291	-1.4915	-0.0013939	-0.069301	-6.4766E-05	934.5591994964603	31.718	0.24136	31.718	31.646	31.887	0	291	175	1.446459	0.103304625	1.446459	293.9611	0	20.994415						682	11	4	NaN	NaN	NaN	0.056143	1	6698	6698		44.302	2.5178	1	236100			27834	2805	16002	16459	22252	22252					0.08408430079691698
VAAVITITF	9	Unmodified	_VAAVITITF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5607953860999	1	934.560795	933.553519	1.8254	0.001706	-2.7163	-0.0025385	-0.89089	-0.00083259	934.558179122812	32.417	0.048244	32.414	32.365	32.414	-0.0031052	291	37	1.446459	0.021357417	1.4449396	293.96112	0	4.3404236						44	3	2	NaN	NaN	NaN	0.20577	1	6555	6555		24.961	0	1	3141.6			27835	2805	16002	16459	22253	22253					0.08408430079691698
VAAVITITF	9	Unmodified	_VAAVITITF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5607953860999	1	934.560795	933.553519	1.2134	0.001134	-1.4159	-0.0013233	-0.20248	-0.00018923	934.5592481349756	31.717	0.38612	31.712	31.64	32.026	-0.0044155	291	127	1.446459	0.07480669	1.4449396	293.9611	0	15.20282						755	17	3	NaN	NaN	NaN	0.03623	1	6556	6556		52.758	2.9254	1	262840			27836	2805	16002	16459	22254	22254					0.08408430079691698
VAAVITITF	9	Unmodified						0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.560795	933.553519	1.4081	0.0013159	1.0862	0.0010151	2.4943	0.002331	934.5620509383365	32.177	0.048256	32.177	32.177	32.225	0	291	37	1.446459	0.021357417	1.446459	293.9611		4.3404236	-0.11855	0.0017574	0.00075972	NaN	24.961	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3754.3			27837	2805	16002	16459							0.08408430079691698
VAAVNGKG	8	Unmodified	_VAAVNGKG_					0	0	0		ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.4097144730001	1	715.409714	714.402438	-0.43071	-0.00030813	1.2892	0.00092231	0.8585	0.00061418	715.4111873328258	56.851	0.072044	56.85	56.826	56.898	-0.00056458	513	58	1.3142352	0.034085274	1.3127158	268.27737	0	6.9578857						105	4	2	NaN	NaN	NaN	0.8439	1	3439	3439		3.1533	0	1	8033.2			27838	3852	16003	16460	22255	22255					0.033812884917210795
VACGESTGFLW	11	Unmodified	_VACGESTGFLW_					0	0	0		ENST00000486015.1_1_10:77162714-77167299:+|nuORF	ENST00000486015.1_1_10:77162714-77167299:+|nuORF	ENST00000486015.1_1_10:77162714-77167299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2684240394001	2	585.268424	1168.5223	1.5332	0.00089734	6.3855	0.0037373	7.9187	0.0046346	585.2722550621129	22.886	0.19289	22.872	22.848	23.041	-0.01354	1245	127	0.87076044	0.07723403	0.869241	352.88617	0	31.300018						446	9	3	NaN	NaN	NaN	0.63005	1	14895	14895		12.049	0.50025	1	51578			27839	7237	16004	16461	22256	22256					-0.05522511016692988
VACVFGVQQPL	11	Unmodified	_VACVFGVQQPL_					0	0	0			REV__nc|ENSG00000140090|Q8NFF2-3|SLC24A4	REV__nc|ENSG00000140090|Q8NFF2-3|SLC24A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8102590643501	2	580.810259	1159.60597	2.2614	0.0013134	1.0932	0.00063496	3.3546	0.0019484	580.8118045378071	15.891	0.14365	15.879	15.855	15.999	-0.012611	1203	37	0.8965218	0.022064447	0.89500237	363.35886	0	8.942688						121	7	3	NaN	NaN	NaN	0.75314	1	14627	14627		3.9685	0.7569	1	10090	+		27840	9785	16005	16462	22257	22257					0.03254645151037039
VADEEIAAL	9	Unmodified	_VADEEIAAL_					0	0	0		ENSG00000120333|ENST00000476371|MRPS14	ENSG00000120333|ENST00000476371|MRPS14	ENSG00000120333|ENST00000476371|MRPS14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4778536177001	1	930.477854	929.470577	1.9221	0.0017885	-0.78275	-0.00072833	1.1394	0.0010601	930.4771123171707	23.995	0.19302	23.995	23.947	24.14	0	336	97	1.419741	0.057074428	1.419741	288.54965	0	11.5998535						338	9	4	NaN	NaN	NaN	0.094712	1	6588	6588		36.586	0	1	65843			27841	2258	16006	16463	22258	22258					0.0030206856106360647
VADGPEGG	8	Unmodified	_VADGPEGG_					0	0	0			REV__FBXO31|p.G421S|1|0.22|ENSG00000103264|chr16:87334022-87334022|C/T|missense_variant	REV__FBXO31|p.G421S|1|0.22|ENSG00000103264|chr16:87334022-87334022|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3100600079001	1	701.31006	700.302784	0.76	0.000533	-2.333	-0.0016361	-1.573	-0.0011031	701.3085364903495	26.987	0.19312	26.977	26.905	27.098	-0.010126	639	112	1.2387238	0.06671786	1.2372043	252.95888	0	13.624374						341	9	3	NaN	NaN	NaN	0.80071	1	3162	3162		9.1232	0	1	42071	+		27842	8913	16007	16464	22259	22259					-0.05935573912893233
VADPVEAVL	9	Unmodified	_VADPVEAVL_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5036744376999	1	912.503674	911.496398	2.2454	0.002049	0.45357	0.00041388	2.699	0.0024628	912.5044388963423	27.471	0.38615	27.471	27.326	27.712	0	381	211	1.3929803	0.12516999	1.3929803	283.19226	0	25.446991						1329	17	5	NaN	NaN	NaN	0.04947	1	6255	6255		47.136	5.3513	1	830510			27843	3090	16008	16465	22260	22260					0.037109628033249464
VADPVEAVL	9	Unmodified	_VADPVEAVL_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;ENST00000534987.5_1_11:71728600-71747007:-|nuORF;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.5036744376999	1	912.503674	911.496398	2.154	0.0019656	0.97608	0.00089068	3.1301	0.0028562	912.5048799204409	27.494	0.55507	27.484	27.34	27.895	-0.009552	378	214	1.3947657	0.12696481	1.3932463	283.55524	0	25.81189						1401	24	5	NaN	NaN	NaN	0.028349	1	6135	6135		61.271	24.685	1	836800			27844	3090	16008	16465	22261	22261					0.037109628033249464
VADPYDQSF	9	Unmodified	_VADPYDQSF_					0	0	0		nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14	nc|ENSG00000112062|Q16539-2|MAPK14	nc|ENSG00000112062|Q16539-2|MAPK14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1041.4523671487	1	1041.45237	1040.44509	1.7198	0.0017911	-0.10229	-0.00010653	1.6175	0.0016845	1041.4523249787294	22.019	0.12053	22.019	21.994	22.115	0	240	46	1.4766881	0.02664721	1.4766881	299.65594	0	5.4073486						109	6	2	NaN	NaN	NaN	0.032409	1	10216	10216		55.958	29.843	1	9990.2			27845	1850	16009	16466	22262	22262					-0.07351405961367163
VADPYDQSF	9	Unmodified	_VADPYDQSF_					0	0	0		nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14	nc|ENSG00000112062|Q16539-2|MAPK14	nc|ENSG00000112062|Q16539-2|MAPK14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1041.4523671487	1	1041.45237	1040.44509	1.3626	0.0014191	-0.19224	-0.00020021	1.1704	0.0012189	1041.451624384571	22.018	0.12038	22.004	21.98	22.101	-0.013895	237	52	1.4784646	0.030196905	1.4769452	300.01642	0	6.1276855						144	6	3	NaN	NaN	NaN	0.022185	1	9997	9997		69.233	50.069	1	9093.6			27846	1850	16009	16466	22263	22263					-0.07351405961367163
VADPYVVIM	9	Unmodified	_VADPYVVIM_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5277806982001	1	1006.52778	1005.5205	1.9312	0.0019438	0.22445	0.00022591	2.1557	0.0021697	1006.5284561583512	29.256	0.26545	29.256	29.16	29.425	0	177	166	1.5139546	0.09762359	1.5139546	307.3578	0	19.819214						1028	12	5	NaN	NaN	NaN	0.062072	1	8801	8801		41.785	16.823	1	353460			27847	783	16010	16467	22264	22264					0.01796479965355502
VADPYVVIM	9	Unmodified	_VADPYVVIM_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5277806982001	1	1006.52778	1005.5205	1.8066	0.0018184	-0.60089	-0.00060481	1.2058	0.0012136	1006.5278823182689	29.256	0.36196	29.248	29.175	29.537	-0.0077229	174	181	1.5157272	0.10651553	1.5142077	307.71765	0	21.62442						1082	16	5	NaN	NaN	NaN	0.16171	1	8635	8635		27.789	3.9384	1	353280			27848	783	16010	16467	22265	22265					0.01796479965355502
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(85)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5226953203002	1	1022.5227	1021.51542	2.7057	0.0027667	-1.4288	-0.0014609	1.277	0.0013057	1022.5216985681685	24.864	0.2172	24.864	24.816	25.033	0	183	154	1.510409	0.09052372	1.510409	306.57303	0	18.373932						915	10	5	NaN	NaN	NaN	0.012648	1	9435	9435		84.879	43.094	1	350820			27849	783	16010	16468	22266	22266		81			0.0055217610274667095
VADPYVVIM	9	Oxidation (M)	_VADPYVVIM(Oxidation (M))_		VADPYVVIM(1)		VADPYVVIM(50)	0	0	1		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5226953203002	1	1022.5227	1021.51542	2.0858	0.0021328	-0.84087	-0.00085981	1.245	0.001273	1022.522138230664	24.864	0.21717	24.851	24.779	24.996	-0.012392	186	151	1.5086359	0.088744044	1.5071164	306.21313	0	18.012665						829	10	5	NaN	NaN	NaN	0.043119	1	9238	9238		49.833	18.272	1	322700			27850	783	16010	16468	22267	22267		81			0.0055217610274667095
VADTVVFSKL	10	Unmodified	_VADTVVFSKL_					0	0	0		ENST00000523340.1_1_8:42396070-42396118:-|nuORF	ENST00000523340.1_1_8:42396070-42396118:-|nuORF	ENST00000523340.1_1_8:42396070-42396118:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.2096134842667	3	360.209613	1077.60701	1.6776	0.0006043	-1.054	-0.00037965	0.62367	0.00022465	360.20913977339484	15.798	0.11998	15.798	15.75	15.87	0	1494	43	0.7172283	0.026013732	0.7172283	436.42184	0	15.828918						107	6	2	NaN	NaN	NaN	0.53991	1	11874	11874		10.244	0	1	11434			27851	7409	16011	16469	22268	22268					0.07131182791590618
VAEFLQDQN	9	Unmodified	_VAEFLQDQN_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000545220.1_1_12:7343495-7354840:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.5054653517	1	1063.50547	1062.49819	1.2855	0.0013671	7.6697	0.0081568	8.9552	0.0095239	1063.513661670866	36.059	0.19283	36.06	36.012	36.205	0.0011024	150	67	1.5299006	0.038960457	1.5283811	310.3697	0	7.9038696						309	9	4	NaN	NaN	NaN	0.53317	1	10963	10963		8.2448	0.65722	1	39104			27852	3203	16012	16470	22269	22269					-0.030560281787074928
VAESPATPL	9	Unmodified	_VAESPATPL_					0	0	0		KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant	KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant	KRTAP4-9|p.P117Lfs*145|1|0.42|ENSG00000212722|chr17:41105736-41105736|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.4723743093001	1	884.472374	883.465098	1.4717	0.0013016	-0.90663	-0.00080189	0.56503	0.00049975	884.471185375613	21.079	0.072231	21.065	21.041	21.114	-0.014004	414	43	1.3733286	0.025028586	1.3718091	279.32883	0	5.0906982						86	4	2	NaN	NaN	NaN	0.45297	1	5723	5723		11.548	0	1	7346.8			27853	7838	16013	16471	22270	22270					0.01870389769248959
VAFLDWAL	8	Unmodified	_VAFLDWAL_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5032805072	1	934.503281	933.496004	1.5101	0.0014112	0.77864	0.00072764	2.2887	0.0021388	934.5040444667676	36.446	0.14474	36.446	36.422	36.567	0	273	58	1.4571344	0.033799767	1.4571344	296.1309	0	6.869049						220	7	3	NaN	NaN	NaN	0.54545	1	6693	6693		28.667	6.5402	1	28711			27854	2234	16014	16472	22271	22271					0.026595878741318302
VAFLDWAL	8	Unmodified	_VAFLDWAL_					0	0	0		ENST00000469445.1_1_2:27263203-27263702:+|nuORF;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENST00000469445.1_1_2:27263203-27263702:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5032805072	1	934.503281	933.496004	1.6706	0.0015612	-0.19296	-0.00018032	1.4777	0.0013809	934.5026017339319	36.445	0.21691	36.446	36.398	36.615	0.0016785	273	55	1.4571344	0.03201568	1.4556149	296.1309	0	6.5065002						238	10	3	NaN	NaN	NaN	0.27293	1	6547	6547		44.247	2.4624	1	29143			27855	2234	16014	16472	22272	22272					0.026595878741318302
VAFSEIMSM	9	Unmodified	_VAFSEIMSM_					0	0	0		ENST00000495155.5_1_17:19186396-19216987:+|nuORF;EPN2|p.T470Nfs*19|1|0.3|ENSG00000072134|chr17:19329636-19329637|-/A|frameshift_variant;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2;nc|ENSG00000063245|Q9Y6I3-1|EPN1	ENST00000495155.5_1_17:19186396-19216987:+|nuORF	ENST00000495155.5_1_17:19186396-19216987:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4634658819001	1	1014.46347	1013.45619	2.1441	0.0021751	0.93724	0.00095079	3.0813	0.0031259	1014.4634537351993	30.222	0.096533	30.222	30.173	30.27	0	198	52	1.5015416	0.03015852	1.5015416	304.80548	0	6.12204						130	5	3	NaN	NaN	NaN	0.29681	1	9109	9109		19.118	0	1	10985			27856	660	16015	16473	22273	22273					-0.050000431830994785
VAGAGGPH	8	Unmodified	_VAGAGGPH_					0	0	0			REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3365495299	1	665.33655	664.329273	1.9278	0.0012826	-6.1028	-0.0040604	-4.175	-0.0027778	665.3324922529187	23.995	0.14478	23.982	23.934	24.079	-0.013048	729	49	1.184579	0.02892363	1.1830596	242.1531	0	5.9125824						126	7	2	NaN	NaN	NaN	0.84651	1	2346	2346		1.6704	0	1	10634	+		27857	8239	16016	16474	22274	22274					-0.016318402309138946
VAGAGGPH	8	Unmodified						0	0	0			REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	665.33655	664.329273	1.569	0.0010439	-7.1374	-0.0047487	-5.5684	-0.0037049	665.3332604327011	23.971	0.12063	23.971	23.923	24.044	0	726	52	1.1863867	0.030726314	1.1863867	242.52263		6.2811127	-0.0054345	-0.00040633	0.0016635	NaN	1.6704	148	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11931	+		27858	8239	16016	16474							-0.016318402309138946
VAGAGGPH	8	Unmodified						0	0	0			REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	REV__chr8:144359747-144360803|135|25.64|0.28|6.54|+|2|SLC52A2,SLC52A2|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	665.33655	664.329273	1.9278	0.0012826	-6.1028	-0.0040604	-4.175	-0.0027778	665.3324922529187	23.995	0.14478	23.982	23.934	24.079	-0.013048	729	49	1.184579	0.02892363	1.1830596	242.1531		5.9125824	0.0054345	0.00028199	-0.0016635	NaN	1.6704	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10634	+		27859	8239	16016	16474							-0.016318402309138946
VAGARGKG	8	Unmodified	_VAGARGKG_					0	0	0			REV__ENST00000429837.5_1_19:35997029-36002687:-|nuORF	REV__ENST00000429837.5_1_19:35997029-36002687:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.4209478613002	1	715.420948	714.413671	1.8476	0.0013218	5.0448	0.0036091	6.8923	0.0049309	715.424545023909	25.756	0.096498	25.745	25.672	25.769	-0.0116	603	49	1.2603331	0.028796911	1.2588136	257.27414	0	5.8783875						112	5	2	NaN	NaN	NaN	0.84207	1	3440	3440		3.5732	0	1	13602	+		27860	12148	16017	16475	22275	22275					0.045041105858558694
VAGATPCS	8	Unmodified	_VAGATPCS_					0	0	0		ENST00000401790.5_1_20:18269209-18285693:+|nuORF	ENST00000401790.5_1_20:18269209-18285693:+|nuORF	ENST00000401790.5_1_20:18269209-18285693:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3236015821001	1	705.323602	704.316325	-0.62315	-0.00043952	7.0045	0.0049404	6.3813	0.0045009	705.3294162040286	55.218	0.096272	55.217	55.169	55.266	-0.00061798	630	85	1.2441287	0.050459385	1.2426093	254.03479	0	10.303131						138	5	2	NaN	NaN	NaN	0.84727	1	3231	3231		1.2418	0	1	9349.8			27861	6833	16018	16476	22276	22276					-0.0476603940530822
VAGDIIDF	8	Unmodified	_VAGDIIDF_					0	0	0		ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	849.4352605215	1	849.435261	848.427984	0.92745	0.00078781	0.19197	0.00016307	1.1194	0.00095087	849.4353300008931	31.477	0.14482	31.477	31.452	31.597	0	402	61	1.3804773	0.035743713	1.3804773	280.96057	0	7.2746887						149	7	2	NaN	NaN	NaN	0.54545	1	5363	5363		28.667	3.7055	1	15379			27862	5457	16019	16477	22277	22277					-0.002292817765237487
VAGFAGES	8	Unmodified	_VAGFAGES_					0	0	0		ENSG00000174721|ENST00000311575|FGFBP3	ENSG00000174721|ENST00000311575|FGFBP3	ENSG00000174721|ENST00000311575|FGFBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.3464455142001	1	737.346446	736.339169	1.2009	0.00088548	3.8503	0.002839	5.0512	0.0037245	737.3490054418116	32.513	0.21719	32.51	32.438	32.655	-0.0031052	1212	109	0.8910048	0.066257775	0.88948536	181.78056	0	13.517746						432	10	3	NaN	NaN	NaN	0.84876	1	3769	3769		0.39566	0	1	89605			27863	4957	16020	16478	22278	22278					-0.039546970161836725
VAGGAGAP	8	Unmodified	_VAGGAGAP_					0	0	0		ENST00000261483.4_1_5:109025110-109025431:+|nuORF	REV__ENST00000525385.5_1_11:64879451-64880332:+|nuORF	REV__ENST00000525385.5_1_11:64879451-64880332:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	300.16101396095	2	300.161014	598.307475	0.90531	0.00027174	4.2605	0.0012788	5.1658	0.0015506	300.162356503906	39.068	0.1929	39.068	39.02	39.213	0	1518	118	0.7023569	0.07246286	0.7023569	287.7808	0	29.690643						333	9	2	NaN	NaN	NaN	0.84876	1	600	600		0.39566	0	1	42020			27864	6302	16021	16479	22279	22279					-0.007746449794694854
VAGGCAGV	8	Unmodified	_VAGGCAGV_					0	0	0		ENSG00000140107|ENST00000361529|SLC25A47	ENSG00000140107|ENST00000361529|SLC25A47	ENSG00000140107|ENST00000361529|SLC25A47	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.15487433805004	2	317.154874	632.295196	1.3636	0.00043247	-0.35085	-0.00011127	1.0128	0.0003212	317.1550086944906	41.087	0.28843	41.094	40.854	41.143	0.0074959	1533	133	0.6930556	0.081837356	0.6915362	283.6304	0	33.49164						617	13	2	NaN	NaN	NaN	0.83849	1	1447	1447		4.0537	0	1	88228			27865	3250	16022	16480	22280	22280					-0.035660047141618634
VAGGHGPG	8	Unmodified	_VAGGHGPG_					0	0	0			REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3208994657001	1	651.320899	650.313623	1.5459	0.0010069	-0.82775	-0.00053913	0.71812	0.00046773	651.3207696277988	22.405	0.12044	22.405	22.356	22.477	0	723	52	1.1881942	0.030729651	1.1881942	242.99763	0	6.2845306						136	6	3	NaN	NaN	NaN	0.84876	1	2057	2057		0.39566	0	1	11451	+		27866	12367	16023	16481	22281	22281					-0.02552126747946204
VAGGHGPG	8	Unmodified	_VAGGHGPG_					0	0	0			REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3208994657001	1	651.320899	650.313623	1.6077	0.0010471	7.2808	0.0047421	8.8885	0.0057892	651.3260137163835	21.73	0.19269	21.73	21.633	21.826	0	720	61	1.1900014	0.03614676	1.1900014	243.36719	0	7.3923645						107	9	2	NaN	NaN	NaN	0.84876	1	2058	2058		0.39566	0	1	7951.6	+		27867	12367	16023	16481	22282	22282					-0.02552126747946204
VAGGHGPG	8	Unmodified	_VAGGHGPG_					0	0	0			REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3208994657001	1	651.320899	650.313623	0.98529	0.00064174	0.32347	0.00021068	1.3088	0.00085242	651.3207727185003	22.404	0.1684	22.39	22.318	22.486	-0.013733	723	46	1.1881942	0.02711153	1.1866747	242.99763	0	5.544571						129	8	2	NaN	NaN	NaN	0.84876	1	1972	1972		0.39566	0	1	11837	+		27868	12367	16023	16481	22283	22283					-0.02552126747946204
VAGGHGPG	8	Unmodified						0	0	0			REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	651.320899	650.313623	1.5459	0.0010069	-0.82775	-0.00053913	0.71812	0.00046773	651.3207696277988	22.405	0.12044	22.405	22.356	22.477	0	723	52	1.1881942	0.030729651	1.1881942	242.99763		6.2845306	0.007174	-0.00027852	0.00075972	NaN	0.39566	136	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11451	+		27869	12367	16023	16481							-0.02552126747946204
VAGGHGPG	8	Unmodified						0	0	0			REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	REV__ENST00000479155.1_1_17:18144737-18145166:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	651.320899	650.313623	0.98529	0.00064174	0.32347	0.00021068	1.3088	0.00085242	651.3207727185003	22.404	0.1684	22.39	22.318	22.486	-0.013733	723	46	1.1881942	0.02711153	1.1866747	242.99763		5.544571	-0.007174	0.00047129	-0.00075972	NaN	0.39566	129	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11837	+		27870	12367	16023	16481							-0.02552126747946204
VAGGLGAM	8	Unmodified	_VAGGLGAM_					0	0	0			REV__ENST00000511368.5_1_5:5140576-5146246:+|nuORF	REV__ENST00000511368.5_1_5:5140576-5146246:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021001	1	675.349422	674.342146	1.9479	0.0013155	0.58527	0.00039526	2.5331	0.0017108	675.3499145130228	25.588	0.38603	25.588	25.371	25.757	0	759	181	1.1664921	0.1084404	1.1664921	238.3843	0	22.160873						1041	17	2	NaN	NaN	NaN	0.81214	1	2707	2707		7.5902	0	1	133300	+		27871	12558	16024	16482	22284	22284					-0.008051451630194606
VAGHTSVP	8	Unmodified	_VAGHTSVP_					0	0	0			REV__chr16:14482827-14511216|329|11.29|0.08|7.19|-|2|PARN,None|1	REV__chr16:14482827-14511216|329|11.29|0.08|7.19|-|2|PARN,None|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.20595278085	2	384.205953	766.397353	1.1627	0.00044672	-5.6504	-0.0021709	-4.4877	-0.0017242	384.2038064883139	26.866	0.24137	26.856	26.735	26.976	-0.010645	1440	46	0.7506418	0.027815938	0.7491224	306.06146	0	11.341461						195	11	3	NaN	NaN	NaN	0.82332	1	4231	4231		6.0903	0	1	19579	+		27872	8214	16025	16483	22285	22285					0.004809846290982023
VAGHTSVP	8	Unmodified						0	0	0			REV__chr16:14482827-14511216|329|11.29|0.08|7.19|-|2|PARN,None|1	REV__chr16:14482827-14511216|329|11.29|0.08|7.19|-|2|PARN,None|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	384.205953	766.397353	1.1627	0.00044672	-5.6504	-0.0021709	-4.4877	-0.0017242	384.2038064883139	26.866	0.24137	26.856	26.735	26.976	-0.010645	1440	46	0.7506418	0.027815938	0.7491224	306.06146		11.341461	0.042747	-0.00013374	-0.00075972	NaN	6.0903	195	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19579	+		27873	8214	16025	16483							0.004809846290982023
VAGIGPKN	8	Unmodified	_VAGIGPKN_					0	0	0			REV__nc|ENSG00000198690|Q9Y2M0-2|FAN1	REV__nc|ENSG00000198690|Q9Y2M0-2|FAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	755.4410146014001	1	755.441015	754.433738	1.465	0.0011067	-11.266	-0.0085108	-9.801	-0.0074041	755.43278305907	31.041	0.14481	31.036	31.012	31.157	-0.0050716	513	55	1.3142352	0.032289624	1.3127158	268.00946	0	6.5847473						110	7	2	NaN	NaN	NaN	0.8439	1	4071	4071		3.1533	0.36816	1	10370	+		27874	11181	16026	16484	22286	22286					0.046698615258037535
VAGKASGA	8	Unmodified	_VAGKASGA_					0	0	0			REV__ENSG00000125878|ENST00000246080|TCF15	REV__ENSG00000125878|ENST00000246080|TCF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.3675153073001	1	660.367515	659.360239	1.1574	0.00076434	5.4181	0.0035779	6.5755	0.0043423	660.36945558216	24.502	0.096422	24.502	24.502	24.598	0	696	142	1.2044523	0.08499491	1.2044523	246.25298	0	17.37741						114	5	2	NaN	NaN	NaN	0.84727	1	2287	2287		1.2418	0	1	8875.3	+		27875	9405	16027	16485	22287	22287					0.016933130833308496
VAGKGTCI	8	Unmodified	_VAGKGTCI_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-7|SORBS1	REV__nc|ENSG00000095637|Q9BX66-7|SORBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.70473136034997	2	374.704731	747.39491	2.0245	0.00075858	5.1429	0.0019271	7.1674	0.0026856	374.7069941051186	28.315	0.28958	28.315	28.243	28.532	0	1440	64	0.7506418	0.038954973	0.7506418	306.19785	0	15.89032						476	13	4	NaN	NaN	NaN	0.80692	1	4004	4004		8.2903	0	1	227580	+		27876	8757	16028	16486	22288	22288					0.011108128997761924
VAGMGGAA	8	Unmodified	_VAGMGGAA_					0	0	0			REV__tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	REV__tr|U7SH34|U7SH34_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02311PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805	2	317.154874	632.295196	1.01	0.00032033	-0.93655	-0.00029703	0.073454	2.3296E-05	317.1544897815128	40.537	0.096119	40.537	40.488	40.585	0	1539	109	0.68933374	0.066936016	0.68933374	282.1072	0	27.39331						181	5	2	NaN	NaN	NaN	0.84876	1	1520	1520		0.39566	0	1	22807	+		27877	13390	16029	16487	22289	22289					-0.03566004714173232
VAGPAHGN	8	Unmodified	_VAGPAHGN_					0	0	0			REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3580132535001	1	722.358013	721.350737	1.2004	0.0008671	-8.2167	-0.0059354	-7.0163	-0.0050683	722.3515100981291	28.894	0.14481	28.894	28.87	29.015	0	663	64	1.2243022	0.037862778	1.2243022	249.87393	0	7.7276						105	7	2	NaN	NaN	NaN	0.84651	1	3608	3608		1.6704	0	1	8343.9	+		27878	10192	16030	16488	22290	22290					-0.021084552021875425
VAGPGPPR	8	Unmodified	_VAGPGPPR_					0	0	0			REV__ENST00000477757.5_1_10:97028587-97050742:-|nuORF	REV__ENST00000477757.5_1_10:97028587-97050742:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.7164876774	2	375.716488	749.418422	2.3853	0.00089618	-5.4562	-0.00205	-3.0709	-0.0011538	375.7146352872923	22.742	0.48204	22.742	22.621	23.103	0	1437	88	0.7524962	0.05379498	0.7524962	306.93945	0	21.942688						1021	21	5	NaN	NaN	NaN	0.84651	1	4047	4047		1.6704	0	1	749640	+		27879	11742	16031	16489	22291	22291					0.033689947286120514
VAGTGSAV	8	Unmodified	_VAGTGSAV_					0	0	0			REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.3515308921	1	661.351531	660.344254	1.0779	0.00071285	-10.995	-0.0072716	-9.9172	-0.0065588	661.3435635677826	42.099	0.047981	42.099	42.099	42.147	0	717	46	1.1918083	0.027102828	1.1918083	243.66061	0	5.5410614						53	3	2	NaN	NaN	NaN	0.8439	1	2306	2306		3.1533	0	1	3831.3	+		27880	8414	16032	16490	22292	22292					0.0004960684642583146
VAGTGSAV	8	Unmodified						0	0	0			REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	661.351531	660.344254	1.0779	0.00071285	-10.995	-0.0072716	-9.9172	-0.0065588	661.3435635677826	42.099	0.047981	42.099	42.099	42.147	0	717	46	1.1918083	0.027102828	1.1918083	243.66061		5.5410614	-0.003699	-0.0010738	-0.001047	NaN	3.1533	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3831.3	+		27881	8414	16032	16490							0.0004960684642583146
VAGTGSAV	8	Unmodified						0	0	0			REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	REV__nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	661.351531	660.344254	1.5524	0.0010267	-7.9617	-0.0052655	-6.4092	-0.0042388	661.3445899213765	42.097	0.095879	42.106	42.082	42.178	0.0089989	711	37	1.1954219	0.02168107	1.1939025	244.39937		4.432602	0.003699	0.00093236	0.001047	NaN	3.1533	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3814.7	+		27882	8414	16032	16490							0.0004960684642583146
VAGTHGVL	8	Unmodified	_VAGTHGVL_					0	0	0			REV__FBXW7|p.G423A|1|0.08|ENSG00000109670|chr4:152328358-152328358|C/G|missense_variant	REV__FBXW7|p.G423A|1|0.08|ENSG00000109670|chr4:152328358-152328358|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	753.4253645372002	1	753.425365	752.418088	1.3072	0.00098491	-7.9518	-0.0059911	-6.6446	-0.0050062	753.4196934697761	34.276	0.16875	34.276	34.228	34.396	0	531	64	1.3034686	0.03770125	1.3034686	265.82654	0	7.6887207						197	8	3	NaN	NaN	NaN	0.83211	1	4106	4106		4.9097	1.7564	1	23600	+		27883	12992	16033	16491	22293	22293					0.03197575008766762
VAGVGCLG	8	Unmodified	_VAGVGCLG_					0	0	0			REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021001	1	675.349422	674.342146	1.7951	0.0012123	1.4602	0.00098615	3.2553	0.0021985	675.3504862514985	25.612	0.41015	25.6	25.335	25.745	-0.0116	762	190	1.1646824	0.11388075	1.163163	238.01445	0	23.27266						1221	18	2	NaN	NaN	NaN	0.71635	1	2620	2620		18.034	0	1	141860	+		27884	10800	16034	16492	22294	22294					-0.008051451630194606
VAGVGCLG	8	Unmodified						0	0	0			REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.9479	0.0013155	0.58527	0.00039526	2.5331	0.0017108	675.3499145130228	25.588	0.38603	25.588	25.371	25.757	0	759	181	1.1664921	0.1084404	1.1664921	238.3843		22.160873	-0.0061605	-0.00034229	0.0016646	NaN	18.034	1041	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133300	+		27885	10800	16034	16492							-0.008051451630194606
VAGVGCLG	8	Unmodified						0	0	0			REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	REV__ENST00000577424.1_1_17:8050372-8050889:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.7951	0.0012123	1.4602	0.00098615	3.2553	0.0021985	675.3504862514985	25.612	0.41015	25.6	25.335	25.745	-0.0116	762	190	1.1646824	0.11388075	1.163163	238.01445		23.27266	0.0061605	0.0002486	-0.0016646	NaN	18.034	1221	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141860	+		27886	10800	16034	16492							-0.008051451630194606
VAHAGCSG	8	Unmodified	_VAHAGCSG_					0	0	0		ENST00000379477.5_1_13:41835935-41837507:-|nuORF	ENST00000379477.5_1_13:41835935-41837507:-|nuORF	ENST00000379477.5_1_13:41835935-41837507:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3035348420001	1	701.303535	700.296258	0.93055	0.0006526	7.2861	0.0051098	8.2167	0.0057624	701.3084812300287	26.94	0.19307	26.94	26.915	27.109	0	642	91	1.2369217	0.054092526	1.2369217	252.59088	0	11.046204						368	9	3	NaN	NaN	NaN	0.59262	1	3222	3222		25.752	15.7	1	46835			27887	6723	16035	16493	22295	22295					-0.06587790345258782
VAHAGCSG	8	Unmodified						0	0	0		ENST00000379477.5_1_13:41835935-41837507:-|nuORF	ENST00000379477.5_1_13:41835935-41837507:-|nuORF	ENST00000379477.5_1_13:41835935-41837507:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	701.303535	700.296258	0.76001	0.000533	6.9714	0.004889	7.7314	0.005422	701.3085364903495	26.987	0.19312	26.977	26.905	27.098	-0.010126	639	112	1.2387238	0.06671786	1.2372043	252.95888		13.624374	0.01867	-0.00011784	0.00014129	NaN	25.752	341	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42071			27888	6723	16035	16493							-0.06587790345258782
VAHAVPNPE	9	Unmodified	_VAHAVPNPE_					0	0	0		ENST00000550663.1_1_12:45457440-45457707:-|nuORF	ENST00000550663.1_1_12:45457440-45457707:-|nuORF	ENST00000550663.1_1_12:45457440-45457707:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.24306656864997	2	467.243067	932.47158	0.86914	0.0004061	-10.449	-0.0048823	-9.58	-0.0044762	467.23857154203927	12.412	0.095933	12.412	12.364	12.46	0	1368	31	0.7950918	0.018498778	0.7950918	323.17038	0	7.518921						47	5	2	NaN	NaN	NaN	0.46215	1	6660	6660		11.17	0.56537	1	4583.7			27889	7541	16036	16494	22296	22296					0.0026432772060616117
VAHEDYMEL	9	Unmodified	_VAHEDYMEL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF;THOC5|p.F535L|1|0.11|ENSG00000100296|chr22:29517107-29517107|A/G|missense_variant	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7447817676	2	553.744782	1105.47501	0.98058	0.00054299	0.68946	0.00038178	1.67	0.00092477	553.7446164410306	20.525	0.14434	20.525	20.501	20.646	0	1230	58	0.8799654	0.03498262	0.8799654	356.85376	0	14.186554						131	7	2	NaN	NaN	NaN	0.39244	1	13064	13064		14.042	3.4366	1	18647			27890	1218	16037	16495	22297	22297					-0.07350790287705422
VAHEDYMEL	9	Unmodified	_VAHEDYMEL_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF;THOC5|p.F535L|1|0.11|ENSG00000100296|chr22:29517107-29517107|A/G|missense_variant	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7447817676	2	553.744782	1105.47501	1.175	0.00065066	0.088307	4.89E-05	1.2633	0.00069956	553.7446465226117	20.525	0.12034	20.511	20.487	20.608	-0.014141	1230	61	0.8799654	0.03682977	0.878446	356.85376	0	14.935638						174	6	3	NaN	NaN	NaN	0.27442	1	12717	12717		20.555	5.3801	1	17642			27891	1218	16037	16495	22298	22298					-0.07350790287705422
VAHGGRKM	8	Unmodified	_VAHGGRKM_					0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.4617668185001	1	855.461767	854.45449	1.4973	0.0012809	1.9946	0.0017063	3.4919	0.0029872	855.4636100163649	24.285	0.16888	24.285	24.237	24.406	0	1209	82	0.892844	0.049642324	0.892844	181.69493	0	10.10228						240	8	2	NaN	NaN	NaN	0.84876	1	5462	5462		0.39566	0	1	20354			27892	4582	16038	16496	22299	22299					0.021441286338244936
VAHGGRKM	8	Unmodified						0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	855.461767	854.45449	1.1964	0.0010235	2.1523	0.0018412	3.3487	0.0028647	855.4634033717327	24.26	0.14483	24.248	24.224	24.368	-0.012749	1206	88	0.894683	0.053331077	0.89316356	182.06917		10.852936	-0.018583	6.3477E-05	0.00015978	NaN	0.39566	225	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18497			27893	4582	16038	16496							0.021441286338244936
VAIAELVAL	9	Unmodified	_VAIAELVAL_					0	0	0		ENST00000496841.5_1_2:128377972-128392002:+|nuORF;nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	ENST00000496841.5_1_2:128377972-128392002:+|nuORF	ENST00000496841.5_1_2:128377972-128392002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	898.5607953861	1	898.560795	897.553519	0.96335	0.00086563	1.1523	0.0010354	2.1156	0.001901	898.5620639353973	33.528	0.072365	33.528	33.504	33.576	0	303	43	1.4393384	0.024924874	1.4393384	292.68445	0	5.0684204						70	4	2	NaN	NaN	NaN	0.36492	1	6031	6031		15.175	0	1	6636.7			27894	4707	16039	16497	22300	22300					0.10064430079705744
VAIAKVQI	8	Unmodified	_VAIAKVQI_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.5505650508002	1	841.550565	840.543289	-0.70179	-0.00059059	1.4159	0.0011915	0.71406	0.00060092	841.5514616185185	58.003	0.096004	58.002	57.978	58.074	-0.00051117	372	55	1.3983358	0.032131672	1.3968164	284.63776	0	6.5405273						107	5	3	NaN	NaN	NaN	0.84876	1	5144	5144		0.39566	0	1	17932	+		27895	8709	16040	16498	22301	22301					0.11663867145136919
VAIAKVQI	8	Unmodified						0	0	0			REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	841.550565	840.543289	-0.70179	-0.00059059	1.4159	0.0011915	0.71406	0.00060092	841.5514616185185	58.003	0.096004	58.002	57.978	58.074	-0.00051117	372	55	1.3983358	0.032131672	1.3968164	284.63776		6.5405273	-0.0013901	0.00091793	0.00013278	NaN	0.39566	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17932	+		27896	8709	16040	16498							0.11663867145136919
VAKKVYLLC	9	Unmodified	_VAKKVYLLC_					0	0	0		ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8148131260001	2	518.814813	1035.61507	0.78676	0.00040818	-9.8506	-0.0051106	-9.0638	-0.0047025	518.8099758117792	35.698	0.19286	35.698	35.602	35.794	0.00053024	1224	70	0.883646	0.042319894	0.88212657	358.6439	0	17.17633						294	9	3	NaN	NaN	NaN	0.53206	1	9829	9829		8.2903	0.70005	1	46958			27897	6130	16041	16499	22302	22302					0.09869038507349615
VAKKVYLLC	9	Unmodified						0	0	0		ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.814813	1035.61507	1.4316	0.00074274	-11.365	-0.0058964	-9.9335	-0.0051536	518.8091606752839	35.699	0.28936	35.699	35.627	35.916	0	1233	82	0.87812483	0.04967457	0.87812483	356.403		20.161316	0.00045802	-0.00045754	-0.0020009	NaN	8.2903	449	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144150			27898	6130	16041	16499							0.09869038507349615
VAKSGGSA	8	Unmodified	_VAKSGGSA_					0	0	0			REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.3624299294	1	676.36243	675.355153	0.75572	0.00051114	5.0302	0.0034023	5.786	0.0039134	676.365505658271	30.607	0.12066	30.601	30.577	30.698	-0.0057545	696	121	1.2044523	0.072208405	1.2029328	246.13446	0	14.756058						238	6	3	NaN	NaN	NaN	0.83913	1	2647	2647		3.9685	1.507	1	24607	+		27899	12580	16042	16500	22303	22303					0.0044900922071065
VAKSHGPKFG	10	Unmodified	_VAKSHGPKFG_					0	0	0			REV__ENST00000488268.5_1_1:53373241-53377448:-|nuORF	REV__ENST00000488268.5_1_1:53373241-53377448:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.2878084233001	2	514.287808	1026.56106	1.5625	0.0008036	-10.284	-0.0052892	-8.7219	-0.0044856	514.2821894640064	23.272	0.072363	23.258	23.234	23.307	-0.013294	1290	70	0.84311575	0.042420685	0.8415963	342.23355	0	17.219208						129	4	2	NaN	NaN	NaN	0.70677	1	9445	9445		7.5876	0.047225	1	17951	+		27900	12439	16043	16501	22304	22304					0.04884582399995452
VALCCLSS	8	Unmodified	_VALCCLSS_					0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.3739225931	1	795.373923	794.366646	1.3996	0.0011132	-6.3329	-0.005037	-4.9333	-0.0039238	795.3687802483056	30.945	0.36205	30.94	30.795	31.157	-0.0050716	498	82	1.3232021	0.048421383	1.3216827	269.59573	0	9.865631						337	16	2	NaN	NaN	NaN	0.8439	1	4591	4591		3.1533	0	1	43249	+		27901	11517	16044	16502	22305	22305					-0.03876253071814517
VALCCLSS	8	Unmodified						0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.373923	794.366646	1.3297	0.0010576	-5.3675	-0.0042692	-4.0378	-0.0032116	795.3687580475366	30.873	0.19304	30.873	30.825	31.018	0	501	85	1.3214091	0.050228238	1.3214091	269.2304		10.233734	-0.033123	0.00041485	-0.00013678	NaN	3.1533	278	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39148	+		27902	11517	16044	16502							-0.03876253071814517
VALCCLSS	8	Unmodified						0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	795.373923	794.366646	1.3996	0.0011132	-6.3329	-0.005037	-4.9333	-0.0039238	795.3687802483056	30.945	0.36205	30.94	30.795	31.157	-0.0050716	498	82	1.3232021	0.048421383	1.3216827	269.59573		9.865631	0.033123	-0.00035296	0.00013678	NaN	3.1533	337	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43249	+		27903	11517	16044	16502							-0.03876253071814517
VALDFEQEM	9	Unmodified	_VALDFEQEM_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.4870380954999	1	1081.48704	1080.47976	1.3314	0.0014399	0.59617	0.00064475	1.9276	0.0020846	1081.487582125458	27.012	0.28956	27.012	26.964	27.253	0	168	130	1.5192716	0.0761379	1.5192716	308.14767	0	15.442749						563	13	4	NaN	NaN	NaN	0.013959	1	11989	11989		80.901	39.944	1	108850			27904	841	16045	16503	22306	22306					-0.0572590614492583
VALDFEQEM	9	Unmodified	_VALDFEQEM_					0	0	0		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.4870380954999	1	1081.48704	1080.47976	1.5598	0.0016869	-0.46332	-0.00050107	1.0965	0.0011858	1081.4868150345137	27.011	0.21722	27.001	26.977	27.194	-0.010126	168	91	1.5192716	0.053156137	1.5177522	308.14767	0	10.781433						525	10	4	NaN	NaN	NaN	0.00019594	1	11674	11674		117.07	47.284	1	97412			27905	841	16045	16503	22307	22307					-0.0572590614492583
VALDFEQEM	9	Oxidation (M)	_VALDFEQEM(Oxidation (M))_		VALDFEQEM(1)		VALDFEQEM(130)	0	0	1		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2446145921	2	549.244615	1096.47468	1.8638	0.0010237	-1.7292	-0.00094978	0.13457	7.391E-05	549.243593077058	23.345	0.21707	23.345	23.296	23.513	0	1272	121	0.854179	0.073667586	0.854179	346.43158	0	29.877563						439	10	5	NaN	NaN	NaN	3.0773E-07	1	12671	12671		130.13	82.653	1	93164			27906	841	16045	16504	22308	22308		87			-0.06970210007557398
VALDFEQEM	9	Oxidation (M)	_VALDFEQEM(Oxidation (M))_		VALDFEQEM(1)		VALDFEQEM(140)	0	0	1		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.4819527175998	1	1097.48195	1096.47468	2.3168	0.0025426	-0.86684	-0.00095135	1.4499	0.0015913	1097.4813589243709	23.32	0.14471	23.32	23.296	23.441	0	180	88	1.5121819	0.05140865	1.5121819	306.65326	0	10.425079						372	7	4	NaN	NaN	NaN	1.2827E-11	1	12672	12672		141.69	80.711	1	77745			27907	841	16045	16504	22309	22309		87			-0.06970210007557398
VALDFEQEM	9	Oxidation (M)	_VALDFEQEM(Oxidation (M))_		VALDFEQEM(1)		VALDFEQEM(110)	0	0	1		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1097.4819527175998	1	1097.48195	1096.47468	2.3201	0.0025462	-0.77418	-0.00084965	1.5459	0.0016966	1097.4816427759552	23.344	0.21721	23.331	23.283	23.5	-0.013294	180	79	1.5121819	0.0460881	1.5106624	306.65326	0	9.34613						406	10	5	NaN	NaN	NaN	0.002766	1	12344	12344		108.71	41.557	1	75876			27908	841	16045	16504	22310	22310		87			-0.06970210007557398
VALDFEQEM	9	Oxidation (M)	_VALDFEQEM(Oxidation (M))_		VALDFEQEM(1)		VALDFEQEM(120)	0	0	1		ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000418987.2_1_9:103493819-103494230:+|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	ENST00000576209.5_1_17:79477718-79479174:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2446145921	2	549.244615	1096.47468	1.8939	0.0010402	-0.11721	-6.4377E-05	1.7767	0.00097585	549.2440554735186	23.344	0.24133	23.331	23.258	23.5	-0.013294	1269	79	0.8560222	0.047920167	0.85450274	347.17914	0	19.43509						397	11	4	NaN	NaN	NaN	0.00016172	1	12345	12345		119.15	78.997	1	83152			27909	841	16045	16504	22311	22311		87			-0.06970210007557398
VALGAVCLV	9	Unmodified	_VALGAVCLV_					0	0	0		ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF;ENSG00000168758|ENST00000305476|SEMA4C	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	ENST00000467747.1_1_2:97526365-97527817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4960866393001	1	844.496087	843.48881	1.4559	0.0012295	-4.6792	-0.0039516	-3.2233	-0.002722	844.4924684361176	30.487	0.096518	30.487	30.463	30.56	0	375	109	1.3965509	0.06433177	1.3965509	284.25848	0	13.09433						263	5	3	NaN	NaN	NaN	0.033463	1	5318	5318		54.579	0	1	29896			27910	4636	16046	16505	22312	22312					0.06080532002056316
VALPGPSG	8	Unmodified	_VALPGPSG_					0	0	0		ENSG00000084636|ENST00000373672|COL16A1;nc|ENSG00000084636|Q07092-2|COL16A1	ENSG00000084636|ENST00000373672|COL16A1	ENSG00000084636|ENST00000373672|COL16A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3879163984002	1	697.387916	696.38064	0.58364	0.00040703	6.4305	0.0044846	7.0142	0.0048916	697.3922962979443	33.189	0.2413	33.186	33.138	33.379	-0.0024796	639	127	1.2387238	0.07575405	1.2372043	252.98615	0	15.471329						423	11	3	NaN	NaN	NaN	0.79379	1	3100	3100		10.052	0	1	87011			27911	962	16047	16506	22313	22313					0.02030483743158129
VALSSCKV	8	Unmodified	_VALSSCKV_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	806.4440510688001	1	806.444051	805.436775	1.8965	0.0015294	-8.5482	-0.0068936	-6.6516	-0.0053642	806.4371663566869	28.339	0.048248	28.33	28.305	28.354	-0.0089779	501	49	1.3214091	0.028692722	1.3198897	269.16754	0	5.8446045						54	3	2	NaN	NaN	NaN	0.65542	1	4718	4718		21.835	1.2795	1	3982.5	+		27912	8380	16048	16507	22314	22314					0.02627368588309764
VAPFLATR	8	Unmodified	_VAPFLATR_					0	0	0			REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	874.5145138955002	1	874.514514	873.507237	2.3199	0.0020288	-0.6786	-0.00059345	1.6413	0.0014353	874.5143585606614	25.708	0.12062	25.708	25.684	25.805	0	339	190	1.4179583	0.112538934	1.4179583	288.45673	0	22.89392						454	6	5	NaN	NaN	NaN	0.62311	1	5726	5726		23.85	0	1	231120	+		27913	11867	16049	16508	22315	22315					0.06542409968278662
VAPFLATR	8	Unmodified	_VAPFLATR_					0	0	0			REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.5145138955002	1	874.514514	873.507237	2.1076	0.0018431	-0.80045	-0.00070001	1.3071	0.0011431	874.514240050901	25.756	0.36203	25.745	25.696	26.059	-0.0116	339	157	1.4179583	0.092844725	1.4164388	288.45673	0	18.887482						700	16	4	NaN	NaN	NaN	0.62311	1	5588	5588		23.85	2.898	1	218910	+		27914	11867	16049	16508	22316	22316					0.06542409968278662
VAPFLATR	8	Unmodified						0	0	0			REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	874.514514	873.507237	2.3199	0.0020288	-0.6786	-0.00059345	1.6413	0.0014353	874.5143585606614	25.708	0.12062	25.708	25.684	25.805	0	339	190	1.4179583	0.112538934	1.4179583	288.45673		22.89392	-0.018187	6.2466E-05	0.00075972	NaN	23.85	454	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231120	+		27915	11867	16049	16508							0.06542409968278662
VAPFLATR	8	Unmodified						0	0	0			REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	REV__ENST00000367922.7_1_1:162748395-162748470:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	874.514514	873.507237	2.1076	0.0018431	-0.80045	-0.00070001	1.3071	0.0011431	874.514240050901	25.756	0.36203	25.745	25.696	26.059	-0.0116	339	157	1.4179583	0.092844725	1.4164388	288.45673		18.887482	0.018187	-4.4096E-05	-0.00075972	NaN	23.85	700	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218910	+		27916	11867	16049	16508							0.06542409968278662
VAPGQLLT	8	Unmodified	_VAPGQLLT_					0	0	0		ENST00000464110.1_1_22:24179242-24181052:-|nuORF	ENST00000464110.1_1_22:24179242-24181052:-|nuORF	ENST00000464110.1_1_22:24179242-24181052:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.4719803787999	1	798.47198	797.464704	1.4356	0.0011463	-4.4067	-0.0035186	-2.9711	-0.0023723	798.4682457867001	30.631	0.072412	30.625	30.601	30.673	-0.0057545	537	49	1.2998781	0.02872634	1.2983587	264.8261	0	5.852478						86	4	2	NaN	NaN	NaN	0.84756	1	4638	4638		1.072	0	1	8356.3			27917	7097	16050	16509	22317	22317					0.057870148400297694
VAPIIFLTI	9	Unmodified	_VAPIIFLTI_					0	0	0			REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	REV__ABCC11|p.T395A|1|0.05|ENSG00000121270|chr16:48214946-48214946|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.81787874369996	2	493.817879	985.621205	0.92059	0.0004546	-3.3815	-0.0016699	-2.461	-0.0012153	493.81611706171634	37.795	0.096199	37.795	37.771	37.867	0	1308	40	0.83204526	0.023989916	0.83204526	337.92538	0	9.743225						69	5	2	NaN	NaN	NaN	0.58547	1	8082	8082		6.0903	0	1	5474.7	+		27918	8113	16051	16510	22318	22318					0.12781880010504665
VAPLAAALM	9	Unmodified	_VAPLAAALM_					0	0	0			REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.75168155295	2	428.751682	855.48881	1.039	0.00044548	-5.1868	-0.0022238	-4.1478	-0.0017784	428.74926209619633	34.855	0.16886	34.855	34.782	34.951	0	1275	139	0.85233563	0.08469027	0.85233563	346.8898	0	34.467834						352	8	4	NaN	NaN	NaN	0.58547	1	5475	5475		6.0903	0	1	51625	+		27919	12643	16052	16511	22319	22319					0.055285320020630024
VAPLAAALM	9	Unmodified						0	0	0			REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	428.751682	855.48881	1.039	0.00044548	-5.1868	-0.0022238	-4.1478	-0.0017784	428.74926209619633	34.855	0.16886	34.855	34.782	34.951	0	1275	139	0.85233563	0.08469027	0.85233563	346.8898		34.467834	0.0010922	-0.00034466	-0.023172	NaN	6.0903	352	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51625	+		27920	12643	16052	16511							0.055285320020630024
VAPLAAALM	9	Unmodified						0	0	0			REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	428.751682	855.48881	0.92934	0.00039846	-4.2953	-0.0018416	-3.3659	-0.0014432	428.7498562976017	34.853	0.14464	34.853	34.78	34.925	-0.0006485	1197	67	0.9001988	0.040447116	0.8986794	366.3695		16.461456	-0.0010922	0.00041979	0.023172	NaN	6.0903	233	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31351	+		27921	12643	16052	16511							0.055285320020630024
VAPPCAGG	8	Unmodified	_VAPPCAGG_					0	0	0		ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16269937015	2	336.162699	670.310846	1.0943	0.00036786	8.4568	0.0028429	9.5511	0.0032107	336.16578999390964	40.969	0.12015	40.969	40.873	40.993	0	1524	64	0.698637	0.03906083	0.698637	285.5724	0	15.96637						167	6	2	NaN	NaN	NaN	0.84651	1	2604	2604		1.6704	0	1	32771			27922	5166	16053	16512	22320	22320					-0.037497181971275495
VAPPCAGG	8	Unmodified						0	0	0		ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	336.162699	670.310846	1.3016	0.00043755	8.2689	0.0027797	9.5705	0.0032172	336.16550635037896	40.655	0.048016	40.661	40.637	40.685	0.0067558	1524	70	0.698637	0.042780876	0.69711757	285.5724		17.487	-0.15363	-6.7442E-05	-0.00075972	NaN	1.6704	101	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17071			27923	5166	16053	16512							-0.037497181971275495
VAQGGACP	8	Unmodified	_VAQGGACP_					0	0	0			REV__nc|ENSG00000143537|Q13444-11|ADAM15	REV__nc|ENSG00000143537|Q13444-11|ADAM15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3239359331	1	702.323936	701.316659	0.52092	0.00036585	8.0703	0.005668	8.5912	0.0060338	702.3293700594168	34.999	0.096485	34.999	34.975	35.072	0	663	46	1.2243022	0.027056336	1.2243022	250.00687	0	5.525009						77	5	2	NaN	NaN	NaN	0.84887	1	3240	3240		0.32989	0	1	4550.6	+		27924	9870	16054	16513	22321	22321					-0.045946196854629306
VAQLYFYHF	9	Unmodified	_VAQLYFYHF_					0	0	0		ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	396.5343200177666	3	396.53432	1186.58113	1.8549	0.00073551	4.1793	0.0016572	6.0342	0.0023928	396.5355353808591	18.101	0.07196	18.101	18.077	18.149	0	1464	31	0.73579943	0.018559039	0.73579943	447.20358	0	11.279785						79	4	3	NaN	NaN	NaN	0.67818	1	16055	16055		0.44583	0.060735	1	4415.9			27925	4662	16055	16514	22322	22322					-0.0046966666006937885
VAQNKQRI	8	Unmodified	_VAQNKQRI_					0	0	0			REV__ENSG00000255112|ENST00000526991|CHMP1B	REV__ENSG00000255112|ENST00000526991|CHMP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.78543290985004	2	478.785433	955.556313	1.5115	0.00072369	1.2811	0.00061335	2.7926	0.001337	478.7862890076947	19.635	0.21661	19.621	19.5	19.717	-0.014141	1317	67	0.8265074	0.04061365	0.82498795	335.8215	0	16.501923						303	10	3	NaN	NaN	NaN	0.72043	1	7101	7101		17.78	3.7387	1	26381	+		27926	11379	16056	16515	22323	22323					0.07675698257230579
VAQNKQRI	8	Unmodified						0	0	0			REV__ENSG00000255112|ENST00000526991|CHMP1B	REV__ENSG00000255112|ENST00000526991|CHMP1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.785433	955.556313	1.5115	0.00072369	1.2811	0.00061335	2.7926	0.001337	478.7862890076947	19.635	0.21661	19.621	19.5	19.717	-0.014141	1317	67	0.8265074	0.04061365	0.82498795	335.8215		16.501923	0.10033	-0.00031009	-0.00075972	NaN	17.78	303	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26381	+		27927	11379	16056	16515							0.07675698257230579
VARAVRGQ	8	Unmodified	_VARAVRGQ_					0	0	0		ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.75921815935004	2	428.759218	855.503883	1.6915	0.00072524	-11.113	-0.0047649	-9.4219	-0.0040397	428.75438157124063	25.756	0.21721	25.745	25.721	25.938	-0.0116	1380	79	0.7876915	0.04810202	0.78617203	320.58038	0	19.576904						237	10	3	NaN	NaN	NaN	0.75561	1	5338	5338		15.175	1.4383	1	34523			27928	483	16057	16516	22324	22324					0.0703515991427821
VASDGGDP	8	Unmodified	_VASDGGDP_					0	0	0		ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;PCDHGA2|p.Y418Tfs*5|1|0.16|ENSG00000081853|chr5:141340218-141340218|C/-|frameshift_variant	ENSG00000081853|ENST00000394576|PCDHGA2	ENSG00000081853|ENST00000394576|PCDHGA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.30497463	1	717.304975	716.297698	1.4533	0.0010424	-4.2107	-0.0030204	-2.7574	-0.0019779	717.3025838280378	22.067	0.12064	22.067	22.043	22.163	0	657	40	1.2279087	0.023441434	1.2279087	250.64294	0	4.7848816						81	6	2	NaN	NaN	NaN	0.8439	1	3534	3534		3.1533	0	1	6038.5			27929	925	16058	16517	22325	22325					-0.07179877775524801
VASETAGR	8	Unmodified	_VASETAGR_					0	0	0			REV__NDN|p.R206T|1|0.1|ENSG00000182636|chr15:23686601-23686601|C/G|missense_variant	REV__NDN|p.R206T|1|0.1|ENSG00000182636|chr15:23686601-23686601|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.4053573766001	1	790.405357	789.398081	0.23646	0.0001869	1.5889	0.0012559	1.8254	0.0014428	790.4067626201593	55.026	0.12003	55.025	55.025	55.145	-0.0006218	366	595	1.4019053	0.35323238	1.4003859	285.66162	0	71.977005						699	6	2	NaN	NaN	NaN	0.84512	1	4535	4535		2.4615	0	1	286230	+		27930	13267	16059	16518	22326	22326					-0.005042207218480144
VASSLILL	8	Unmodified	_VASSLILL_					0	0	0		PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant;ENSG00000277161|ENST00000614443|PIGW	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.5236815983002	1	815.523682	814.516405	1.7568	0.0014327	-1.3309	-0.0010854	0.42597	0.00034739	815.5222198490875	32.78	0.048237	32.78	32.78	32.828	0	429	40	1.3643885	0.02325201	1.3643885	277.87036	0	4.7354736						57	3	2	NaN	NaN	NaN	0.40747	1	4951	4951		36.036	0	1	3353.6			27931	6195	16060	16519	22327	22327					0.10172758533963133
VASSVFITL	9	Unmodified	_VASSVFITL_					0	0	0		nc|ENSG00000162458|Q8WUP2-3|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	nc|ENSG00000162458|Q8WUP2-3|FBLIM1	nc|ENSG00000162458|Q8WUP2-3|FBLIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.5400599440001	1	936.54006	935.532783	1.7567	0.0016452	1.0436	0.00097736	2.8003	0.0026226	936.5399473309166	30.415	0.19307	30.415	30.366	30.56	0	282	121	1.4517976	0.07119894	1.4517976	295.03696	0	14.469208						595	9	5	NaN	NaN	NaN	0.030391	1	6741	6741		58.599	5.8409	1	187550			27932	4136	16061	16520	22328	22328					0.06243839700039189
VASSVFITL	9	Unmodified	_VASSVFITL_					0	0	0		nc|ENSG00000162458|Q8WUP2-3|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	nc|ENSG00000162458|Q8WUP2-3|FBLIM1	nc|ENSG00000162458|Q8WUP2-3|FBLIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.5400599440001	1	936.54006	935.532783	1.671	0.0015649	-0.65594	-0.00061431	1.015	0.00095061	936.5393253203265	30.39	0.21717	30.383	30.335	30.552	-0.0064106	279	136	1.4535767	0.08014572	1.4520572	295.39853	0	16.287354						398	10	2	NaN	NaN	NaN	0.032764	1	6601	6601		55.494	2.7354	1	179060			27933	4136	16061	16520	22329	22329					0.06243839700039189
VASTGGAS	8	Unmodified	_VASTGGAS_					0	0	0			REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.3151453858001	1	649.315145	648.307869	1.6145	0.0010483	6.8335	0.0044371	8.448	0.0054854	649.3191595664218	26.311	0.072378	26.3	26.3	26.373	-0.011135	702	103	1.2008407	0.061455965	1.1993213	245.5996	0	12.569168						132	4	2	NaN	NaN	NaN	0.82797	1	1923	1923		5.4659	2.3125	1	12429	+		27934	10851	16062	16521	22330	22330					-0.030352700502817243
VASTGGAS	8	Unmodified						0	0	0			REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	649.315145	648.307869	2.033	0.0013201	6.701	0.0043511	8.734	0.0056711	649.3195757999598	26.288	0.1448	26.288	26.239	26.384	0	705	103	1.1990347	0.061469197	1.1990347	245.23021		12.571854	-0.0063795	-2.8094E-05	-0.00014332	NaN	5.4659	187	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18888	+		27935	10851	16062	16521							-0.030352700502817243
VASTGGAS	8	Unmodified						0	0	0			REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	649.315145	648.307869	1.6145	0.0010483	6.8335	0.0044371	8.448	0.0054854	649.3191595664218	26.311	0.072378	26.3	26.3	26.373	-0.011135	702	103	1.2008407	0.061455965	1.1993213	245.5996		12.569168	0.0063795	5.7934E-05	0.00014332	NaN	5.4659	132	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12429	+		27936	10851	16062	16521							-0.030352700502817243
VATDITSTR	9	Unmodified	_VATDITSTR_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.2589135981	2	482.258914	962.503274	2.175	0.0010489	-0.64522	-0.00031116	1.5298	0.00073774	482.2585096194286	13.901	0.12006	13.901	13.829	13.949	0	1341	37	0.8117308	0.022176862	0.8117308	329.7838	0	9.009857						74	6	2	NaN	NaN	NaN	0.57723	1	7407	7407		6.4299	0.73577	1	6952.8			27937	1576	16063	16522	22331	22331					0.020522756839000067
VATDITSTR	9	Unmodified						0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	482.258914	962.503274	2.1796	0.0010511	-1.7178	-0.00082841	0.46183	0.00022272	482.25833600257954	13.901	0.11985	13.89	13.842	13.962	-0.010672	1341	40	0.8117308	0.024023652	0.81021136	329.78384		9.760162	-0.005367	-0.00055044	-0.00075972	NaN	6.4299	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6629.7			27938	1576	16063	16522							0.020522756839000067
VATDVGDDL	9	Unmodified	_VATDVGDDL_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4258180472001	1	904.425818	903.418542	1.5255	0.0013797	-0.11297	-0.00010217	1.4125	0.0012775	904.4248356401232	20.573	0.096287	20.573	20.525	20.622	0	420	46	1.3697531	0.026817799	1.3697531	278.50723	0	5.452759						94	5	2	NaN	NaN	NaN	0.043119	1	6139	6139		49.833	10.915	1	8082.2			27939	3990	16064	16523	22332	22332					-0.03703094852698996
VATDVGDDL	9	Unmodified	_VATDVGDDL_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4258180472001	1	904.425818	903.418542	1.8547	0.0016775	-0.77827	-0.00070388	1.0765	0.00097359	904.4244890000051	20.549	0.12041	20.535	20.511	20.632	-0.014141	420	46	1.3697531	0.026817799	1.3682337	278.50723	0	5.452759						91	6	2	NaN	NaN	NaN	0.030669	1	6012	6012		58.235	28.637	1	7494.2			27940	3990	16064	16523	22333	22333					-0.03703094852698996
VATFVLELF	9	Unmodified	_VATFVLELF_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5870101366	1	1038.58701	1037.57973	1.6032	0.001665	-0.46033	-0.0004781	1.1428	0.0011869	1038.5873788606573	38.249	0.12022	38.252	38.228	38.349	0.0034256	126	40	1.544062	0.023003817	1.5425426	313.33905	0	4.668213						113	6	3	NaN	NaN	NaN	0.14301	1	9900	9900		29.598	0	1	7379.6			27941	4370	16065	16524	22334	22334					0.06244699251192287
VATGALGGG	9	Unmodified	_VATGALGGG_					0	0	0			REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.3780799936003	1	702.37808	701.370804	1.2289	0.00086312	4.7573	0.0033415	5.9862	0.0042046	702.3816951180071	30.246	0.24132	30.246	30.125	30.366	0	1188	55	0.90571284	0.033082366	0.90571284	184.94952	0	6.7555237						154	11	2	NaN	NaN	NaN	0.6907	1	3241	3241		0	0	1	13305	+		27942	12001	16066	16525	22335	22335					0.00817295737783752
VATGALGGG	9	Unmodified						0	0	0			REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	702.37808	701.370804	1.2289	0.00086312	4.7573	0.0033415	5.9862	0.0042046	702.3816951180071	30.246	0.24132	30.246	30.125	30.366	0	1188	55	0.90571284	0.033082366	0.90571284	184.94952		6.7555237	0.015747	-0.00064613	0.00075972	NaN	0	154	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13305	+		27943	12001	16066	16525							0.00817295737783752
VATGALGGG	9	Unmodified						0	0	0			REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	REV__ENST00000394790.2_1_10:75532144-75533060:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	702.37808	701.370804	0.68579	0.00048168	6.4973	0.0045636	7.1831	0.0050452	702.3828918826935	30.221	0.21717	30.214	30.118	30.335	-0.0064106	1188	49	0.90571284	0.029406548	0.9041934	184.94952		6.0049133	-0.015747	0.00057597	-0.00075972	NaN	0	147	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13139	+		27944	12001	16066	16525							0.00817295737783752
VATILEKT	8	Unmodified	_VATILEKT_					0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.76584317320004	2	437.765843	873.517133	2.0843	0.00091242	-11.492	-0.0050309	-9.408	-0.0041185	437.7607343567825	25.756	0.24135	25.745	25.696	25.938	-0.0116	1263	103	0.85970795	0.06263095	0.8581885	349.7763	0	25.48169						608	11	4	NaN	NaN	NaN	0.49126	1	5589	5589		31.561	4.8295	1	221120			27945	4128	16067	16526	22336	22336					0.0753155318300287
VATILEKT	8	Unmodified						0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	437.765843	873.517133	1.9591	0.00085761	-11.694	-0.0051192	-9.7348	-0.0042616	437.7606768907958	25.708	0.26542	25.708	25.66	25.926	0	1263	97	0.85970795	0.05894041	0.85970795	349.7763		23.980164	-0.018187	-0.00011683	0.00075972	NaN	31.561	596	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220860			27946	4128	16067	16526							0.0753155318300287
VATLFRPA	8	Unmodified	_VATLFRPA_					0	0	0			REV__ENST00000262878.4_1_20:35579996-35580110:-|nuORF	REV__ENST00000262878.4_1_20:35579996-35580110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.76089518105	2	437.760895	873.507237	1.9591	0.00085761	-0.39105	-0.00017119	1.568	0.00068642	437.7606768907958	25.708	0.26542	25.708	25.66	25.926	0	1263	97	0.85970795	0.05894041	0.85970795	349.7763	0	23.980164						596	12	4	NaN	NaN	NaN	0.69898	1	5725	5725		19.118	1.3193	1	220860	+		27947	11555	16068	16527	22337	22337					0.06542409968267293
VATLLMAG	8	Unmodified	_VATLLMAG_					0	0	0		nc|ENSG00000167612|Q7Z3H0-1|ANKRD33	nc|ENSG00000167612|Q7Z3H0-1|ANKRD33	nc|ENSG00000167612|Q7Z3H0-1|ANKRD33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	388.22275693800003	2	388.222757	774.430961	2.0444	0.00079368	6.6403	0.0025779	8.6847	0.0033716	388.2253282380998	25.756	0.16895	25.745	25.721	25.89	-0.0116	1440	64	0.7506418	0.038933814	0.7491224	306.0057	0	15.871704						221	8	3	NaN	NaN	NaN	0.72043	1	4346	4346		17.78	0	1	44358			27948	7976	16069	16528	22338	22338					0.03472270076645145
VATLRPVM	8	Unmodified	_VATLRPVM_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.76258059025	2	443.762581	885.510608	1.5307	0.00067927	-5.1116	-0.0022683	-3.5809	-0.0015891	443.760155780317	25.346	0.096497	25.334	25.31	25.407	-0.012011	1368	46	0.7950918	0.027743638	0.79357237	323.4191	0	11.285278						110	5	3	NaN	NaN	NaN	0.6053	1	5758	5758		24.961	0.39899	1	14364	+		27949	9421	16070	16529	22339	22339					0.0632733675063264
VATLVIRFVVL	11	Unmodified	_VATLVIRFVVL_					0	0	0			REV__ENSG00000198835|ENST00000366714|GJC2	REV__ENSG00000198835|ENST00000366714|GJC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1229.7980059651002	1	1229.79801	1228.79073	1.1492	0.0014133	2.5142	0.003092	3.6634	0.0045052	1229.8005944810348	41.183	0.14451	41.191	41.094	41.239	0.0074959	57	73	1.5847093	0.0423764	1.5831898	320.9304	0	8.58194						198	7	3	NaN	NaN	NaN	0.77378	1	16522	16522		1.3312	0	1	27233	+		27950	11194	16071	16530	22340	22340					0.1854857629309663
VATVASLLV	9	Unmodified	_VATVASLLV_					0	0	0		nc|ENSG00000283703|P0DP72|VSIG10L2;ENSG00000283703|ENST00000686984|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5451453219002	1	872.545145	871.537869	1.2165	0.0010615	0.34512	0.00030114	1.5617	0.0013626	872.5450362921827	29.207	0.048304	29.2	29.175	29.224	-0.0077209	366	49	1.4019053	0.028549314	1.4003859	285.20102	0	5.8080444						64	3	2	NaN	NaN	NaN	0.66529	1	5552	5552		2.1763	0	1	5309.7			27951	6210	16072	16531	22341	22341					0.09696143562678117
VATVASLLV	9	Unmodified						0	0	0		nc|ENSG00000283703|P0DP72|VSIG10L2;ENSG00000283703|ENST00000686984|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.545145	871.537869	1.4543	0.0012689	0.40271	0.00035138	1.857	0.0016203	872.5455975573877	29.208	0.048286	29.208	29.16	29.208	0	363	52	1.4036897	0.030341625	1.4036897	285.56403		6.1726685	0.0042494	2.9342E-05	0.0016519	NaN	2.1763	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4024.7			27952	6210	16072	16531							0.09696143562678117
VATWVDETL	9	Unmodified	_VATWVDETL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5200527834	1	1033.52005	1032.51278	1.4839	0.0015336	-8.9505	-0.0092506	-7.4666	-0.0077169	1033.509852416638	27.109	0.19303	27.109	27.084	27.277	0	183	94	1.510409	0.0549891	1.510409	306.52957	0	11.1597595						239	9	3	NaN	NaN	NaN	0.062072	1	9882	9882		41.785	21.336	1	43136			27953	1478	16073	16532	22342	22342					-0.00217956030564892
VATWVDETL	9	Unmodified	_VATWVDETL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5200527834	1	1033.52005	1032.51278	1.0972	0.001134	-8.9527	-0.0092528	-7.8555	-0.0081188	1033.509845174614	27.132	0.19305	27.122	27.098	27.291	-0.010126	186	94	1.5086359	0.05498326	1.5071164	306.16974	0	11.158569						201	9	2	NaN	NaN	NaN	0.12328	1	9673	9673		32.453	12.004	1	40966			27954	1478	16073	16532	22343	22343					-0.00217956030564892
VAVCGGGS	8	Unmodified	_VAVCGGGS_					0	0	0			REV__nc|ENSG00000100867|Q13268-2|DHRS2	REV__nc|ENSG00000100867|Q13268-2|DHRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.2973868316001	1	649.297387	648.29011	1.353	0.00087848	-3.2254	-0.0020942	-1.8724	-0.0012158	649.2949459824104	32.756	0.048244	32.756	32.756	32.804	0	1119	58	0.9479278	0.034839332	0.9479278	193.87321	0	7.125458						57	3	2	NaN	NaN	NaN	0.84692	1	2003	2003		1.4396	0	1	3886.6	+		27955	13096	16074	16533	22344	22344					-0.04810308576782063
VAVCGGGS	8	Unmodified						0	0	0			REV__nc|ENSG00000100867|Q13268-2|DHRS2	REV__nc|ENSG00000100867|Q13268-2|DHRS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	649.297387	648.29011	1.353	0.00087848	-3.2254	-0.0020942	-1.8724	-0.0012158	649.2949459824104	32.756	0.048244	32.756	32.756	32.804	0	1119	58	0.9479278	0.034839332	0.9479278	193.87321		7.125458	0	0	0	NaN	1.4396	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3886.6	+		27956	13096	16074	16533							-0.04810308576782063
VAVESPFLLV	10	Unmodified	_VAVESPFLLV_					0	0	0			REV__ENST00000380191.8_1_10:5855216-5855492:-|nuORF	REV__ENST00000380191.8_1_10:5855216-5855492:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.3157001955001	2	537.3157	1072.61685	0.9006	0.00048391	-0.69346	-0.00037261	0.20714	0.0001113	537.3146912846995	27.904	0.12071	27.895	27.822	27.943	-0.009552	1230	52	0.8799654	0.03129685	0.878446	356.98834	0	12.696655						110	6	2	NaN	NaN	NaN	0.64158	1	11380	11380		12.049	1.4437	1	11754	+		27957	11964	16075	16534	22345	22345					0.08344370796953626
VAVFGAGG	8	Unmodified	_VAVFGAGG_					0	0	0		ENSG00000165023|ENST00000375765|DIRAS2	ENSG00000165023|ENST00000375765|DIRAS2	ENSG00000165023|ENST00000375765|DIRAS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3617016479002	1	677.361702	676.354425	1.8328	0.0012414	8.1398	0.0055136	9.9725	0.006755	677.3673880049251	30.198	0.24132	30.198	30.125	30.366	0	699	160	1.2026466	0.095865846	1.2026466	245.75824	0	19.589996						821	11	4	NaN	NaN	NaN	0.84876	1	2766	2766		0.39566	0	1	164720			27958	4368	16076	16535	22346	22346					0.003302145716816085
VAVFGAGG	8	Unmodified						0	0	0		ENSG00000165023|ENST00000375765|DIRAS2	ENSG00000165023|ENST00000375765|DIRAS2	ENSG00000165023|ENST00000375765|DIRAS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	677.361702	676.354425	0.97524	0.00066059	8.0044	0.0054219	8.9796	0.0060824	677.3672209189075	29.955	0.19302	29.949	29.828	30.021	-0.0064106	777	49	1.1556307	0.028970122	1.1541113	236.15063		5.9199677	-0.12436	-7.8681E-05	-0.024268	NaN	0.39566	113	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8319.3			27959	4368	16076	16535							0.003302145716816085
VAVGDWVL	8	Unmodified	_VAVGDWVL_					0	0	0		ENST00000463411.1_1_5:176919279-176923513:-|nuORF;nc|ENSG00000196923|Q9NR12-3|PDLIM7;nc|ENSG00000196923|Q9NR12-5|PDLIM7;nc|ENSG00000196923|Q9NR12-6|PDLIM7;nc|ENSG00000196923|Q9NR12-4|PDLIM7;PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant;nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENSG00000196923|ENST00000355841|PDLIM7	ENST00000463411.1_1_5:176919279-176923513:-|nuORF	ENST00000463411.1_1_5:176919279-176923513:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	858.4719803788001	1	858.47198	857.464704	1.5975	0.0013715	0.24672	0.0002118	1.8443	0.0015833	858.472159850575	30.946	0.21721	30.946	30.873	31.091	0	444	130	1.3554435	0.07701707	1.3554435	275.8192	0	15.672211						617	10	4	NaN	NaN	NaN	0.064024	1	5505	5505		74.274	30.027	1	235040			27960	5663	16077	16536	22347	22347					0.030270148400518337
VAVGDWVL	8	Unmodified	_VAVGDWVL_					0	0	0		ENST00000463411.1_1_5:176919279-176923513:-|nuORF;nc|ENSG00000196923|Q9NR12-3|PDLIM7;nc|ENSG00000196923|Q9NR12-5|PDLIM7;nc|ENSG00000196923|Q9NR12-6|PDLIM7;nc|ENSG00000196923|Q9NR12-4|PDLIM7;PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant;nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENSG00000196923|ENST00000355841|PDLIM7	ENST00000463411.1_1_5:176919279-176923513:-|nuORF	ENST00000463411.1_1_5:176919279-176923513:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.4719803788001	1	858.47198	857.464704	1.4519	0.0012464	-0.57456	-0.00049324	0.87729	0.00075313	858.4716634209741	30.92	0.28966	30.915	30.867	31.157	-0.0050716	441	172	1.3572328	0.102146864	1.3557134	276.18332	0	20.785889						616	13	5	NaN	NaN	NaN	0.064024	1	5369	5369		74.274	20.95	1	253370			27961	5663	16077	16536	22348	22348					0.030270148400518337
VAVGNGKG	8	Unmodified	_VAVGNGKG_					0	0	0		ENST00000464458.1_1_2:95770271-95772347:-|nuORF;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	351.2006704377	2	351.20067	700.386788	2.1041	0.00073897	0.76772	0.00026962	2.8718	0.0010086	351.20094514592694	55.677	0.024052	55.677	55.677	55.701	0	1458	25	0.7395112	0.014847219	0.7395112	302.02106	0	6.0637207						30	2	2	NaN	NaN	NaN	0.84876	1	3228	3228		0.39566	0	1	2015.5			27962	7100	16078	16537	22349	22349					0.024610019746660328
VAVGNGKG	8	Unmodified						0	0	0		ENST00000464458.1_1_2:95770271-95772347:-|nuORF;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	351.20067	700.386788	0.60731	0.00021329	0.30902	0.00010853	0.91632	0.00032181	351.2011455123672	55.602	0.12013	55.602	55.554	55.674	-0.00059128	1458	25	0.7395112	0.01484561	0.73799175	302.02106		6.0630493	-0.037403	-0.00014906	-0.00075972	NaN	0.39566	59	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3303.7			27963	7100	16078	16537							0.024610019746660328
VAVKDDPEL	9	Unmodified	_VAVKDDPEL_					0	0	0		nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.263664625	2	493.263665	984.512776	1.8377	0.00090646	3.1864	0.0015717	5.0241	0.0024782	493.26599512647334	17.021	0.096003	17.021	16.973	17.069	0	1296	70	0.8394264	0.04246199	0.8394264	340.92838	0	17.245728						95	5	2	NaN	NaN	NaN	0.29341	1	8036	8036		19.336	3.8738	1	10688			27964	4108	16079	16538	22350	22350					0.01990043969431099
VAVKDDPEL	9	Unmodified	_VAVKDDPEL_					0	0	0		nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.263664625	2	493.263665	984.512776	1.2471	0.00061514	5.1674	0.0025489	6.4145	0.003164	493.26703726358966	17.042	0.14396	17.029	16.957	17.101	-0.013296	1296	79	0.8394264	0.048008323	0.83790696	340.92838	0	19.498322						142	7	3	NaN	NaN	NaN	0.090258	1	7862	7862		37.231	17.894	1	13229			27965	4108	16079	16538	22351	22351					0.01990043969431099
VAVLITTKLST	11	Unmodified	_VAVLITTKLST_					0	0	0			REV__ENST00000477551.5_3_3:150282135-150285804:+|nuORF	REV__ENST00000477551.5_3_3:150282135-150285804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.57618483246665	3	382.576185	1144.70673	2.1312	0.00081535	6.969	0.0026662	9.1002	0.0034815	382.5789257434323	17.957	0.071951	17.957	17.957	18.029	0	1449	31	0.74507743	0.018552959	0.74507743	453.03256	0	11.280853						50	4	2	NaN	NaN	NaN	0.77891	1	14622	14622		0.43218	0	1	2876.5	+		27966	12359	16080	16539	22352	22352					0.14016000405513296
VAVQGSPP	8	Unmodified	_VAVQGSPP_					0	0	0			REV__ENST00000397728.7_1_21:47609326-47609845:-|nuORF	REV__ENST00000397728.7_1_21:47609326-47609845:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.409380122	1	754.40938	753.402104	1.6602	0.0012525	-4.827	-0.0036415	-3.1668	-0.0023891	754.4059123586251	55.725	0.1685	55.725	55.677	55.845	0	426	109	1.3661768	0.06442773	1.3661768	278.6086	0	13.138977						183	8	2	NaN	NaN	NaN	0.84692	1	4123	4123		1.4396	0	1	19110	+		27967	12018	16081	16540	22353	22353					0.015538687718503752
VAVVPVSL	8	Unmodified	_VAVVPVSL_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4974668478002	1	783.497467	782.49019	1.9898	0.001559	5.3017	0.0041539	7.2915	0.0057129	783.5018274828576	56.373	0.21587	56.373	56.325	56.541	0	465	109	1.3429124	0.06450343	1.3429124	273.68213	0	13.14563						356	10	4	NaN	NaN	NaN	0.84651	1	4536	4536		1.6704	0	1	59768	+		27968	13617	16082	16541	22354	22354					0.09024489362479926
VAVVPVSL	8	Unmodified	_VAVVPVSL_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.4974668478002	1	783.497467	782.49019	-0.1632	-0.00012787	4.6155	0.0036162	4.4523	0.0034884	783.5018039577888	56.803	0.19216	56.802	56.73	56.922	-0.00056458	465	64	1.3429124	0.037604928	1.341393	273.68213	0	7.663788						167	9	2	NaN	NaN	NaN	0.84692	1	4448	4448		1.4396	0	1	12825	+		27969	13617	16082	16541	22355	22355					0.09024489362479926
VAVVPVSL	8	Unmodified						0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.497467	782.49019	1.9898	0.001559	5.3017	0.0041539	7.2915	0.0057129	783.5018274828576	56.373	0.21587	56.373	56.325	56.541	0	465	109	1.3429124	0.06450343	1.3429124	273.68213		13.14563	0	0	0	NaN	1.6704	356	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59768	+		27970	13617	16082	16541							0.09024489362479926
VAVWEGRIYIL	11	Unmodified	_VAVWEGRIYIL_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36;nc|ENSG00000135686|Q8N4N3-2|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.8795302603002	2	659.87953	1317.74451	1.495	0.00098651	-4.0014	-0.0026404	-2.5064	-0.0016539	659.87777710992	29.498	0.048338	29.498	29.474	29.522	0	1089	25	0.96624947	0.0146510005	0.96624947	391.0665	0	5.929657						33	3	2	NaN	NaN	NaN	0.76442	1	19079	19079		2.9701	0.080602	1	2468.6			27971	2955	16083	16542	22356	22356					0.09834511390999978
VAWMNGLSVYQ	11	Unmodified	_VAWMNGLSVYQ_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3106232051001	2	634.310623	1266.60669	1.7203	0.0010912	-4.6921	-0.0029762	-2.9718	-0.001885	634.8096834098117	19.444	0.14398	19.444	19.372	19.516	0	1137	88	0.9369253	0.053175867	0.9369253	379.35706	0	21.5307						170	7	3	NaN	NaN	NaN	0.63477	1	18147	18147		11.739	2.7769	1	14366			27972	5678	16084	16543	22357	22357					-0.01594560199919215
VAWMNGLSVYQ	11	Unmodified						0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	634.310623	1266.60669	1.6056	0.0010184	-5.9242	-0.0037578	-4.3186	-0.0027394	634.3068101546079	19.515	0.19257	19.5	19.428	19.621	-0.014141	1137	82	0.9369253	0.049545944	0.93540585	379.35706		20.060974	0.028129	-0.00094477	-0.00075972	NaN	11.739	195	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16407			27973	5678	16084	16543							-0.01594560199919215
VAYKDKEEN	9	Unmodified	_VAYKDKEEN_					0	0	0			REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1095.5316801022	1	1095.53168	1094.5244	1.1632	0.0012744	-0.15041	-0.00016477	1.0128	0.0011096	1096.5332507377066	33.552	0.12054	33.552	33.528	33.648	0	114	64	1.5511382	0.037124634	1.5511382	314.56012	0	7.528595						104	6	2	NaN	NaN	NaN	0.58159	1	12596	12596		6.2502	0	1	8374.1	+		27974	13385	16085	16544	22358	22358					-0.019077590072356543
VCAQAAAL	8	Unmodified	_VCAQAAAL_					0	0	0			REV__ENSG00000182896|ENST00000576060|TMEM95	REV__ENSG00000182896|ENST00000576060|TMEM95	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.3865361898999	1	746.386536	745.37926	1.0407	0.00077675	-4.9538	-0.0036974	-3.9131	-0.0029207	746.3824688543028	32.296	0.1931	32.292	32.244	32.437	-0.0037613	1203	43	0.8965218	0.025741875	0.89500237	182.8656	0	5.2506256						155	9	3	NaN	NaN	NaN	0.84876	1	3905	3905		0.39566	0	1	16304	+		27975	10878	16086	16545	22359	22359					-0.0036147361728353644
VCCFCFCRLW	10	Unmodified	_VCCFCFCRLW_					0	0	0			REV__L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|39|3|anti-sense	REV__L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|39|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.26579262065	2	640.265793	1278.51703	1.9556	0.0012521	-2.3282	-0.0014907	-0.37263	-0.00023858	640.2644048733606	28.339	0.16888	28.339	28.291	28.46	0	1170	70	0.91673553	0.0422377	0.91673553	371.14502	0	17.100128						269	8	4	NaN	NaN	NaN	0.65742	1	18386	18386		9.746	0	1	37094	+		27976	13033	16087	16546	22360	22360					-0.11108552676182626
VCCGGHAG	8	Unmodified	_VCCGGHAG_					0	0	0		ENST00000156825.5_1_19:1577617-1577782:-|nuORF	ENST00000156825.5_1_19:1577617-1577782:-|nuORF	ENST00000156825.5_1_19:1577617-1577782:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.2650408457	1	703.265041	702.257764	1.3485	0.00094836	8.5535	0.0060154	9.902	0.0069637	703.2712376431983	26.311	0.096493	26.3	26.276	26.373	-0.011135	723	73	1.1881942	0.043352842	1.1866747	242.62724	0	8.852585						117	5	2	NaN	NaN	NaN	0.84651	1	3191	3191		1.6704	1.2747	1	11090			27977	6216	16088	16547	22361	22361					-0.10527419251434367
VCFFPSYEY	9	Unmodified	_VCFFPSYEY_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000435753.6_1_12:31250908-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7467931403	2	577.746793	1153.47903	1.78	0.0010284	-5.2178	-0.0030146	-3.4378	-0.0019862	577.7431961418907	15.99	0.14395	15.99	15.99	16.134	0	1224	67	0.883646	0.04050398	0.883646	358.16272	0	16.417236						145	7	3	NaN	NaN	NaN	0.55027	1	14906	14906		7.5404	1.2902	1	12423			27978	249	16089	16548	22362	22362					-0.09156700793982964
VCFFPSYEY	9	Unmodified						0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000435753.6_1_12:31250908-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.746793	1153.47903	2.0824	0.0012031	-6.0827	-0.0035143	-4.0003	-0.0023112	577.7439071040911	16.011	0.11981	15.999	15.975	16.094	-0.012611	1227	64	0.88180584	0.038664997	0.8802864	357.41684		15.6718445	0.0043652	-0.00053415	-0.0016798	NaN	7.5404	147	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12784			27979	249	16089	16548							-0.09156700793982964
VCFSLRAMLF	10	Unmodified	_VCFSLRAMLF_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.80920481935	2	593.809205	1185.60386	1.5398	0.00091437	2.6415	0.0015686	4.1814	0.0024829	593.809700911284	28.001	0.1689	28.001	27.905	28.074	0	1188	85	0.90571284	0.05142814	0.90571284	366.98935	0	20.838379						404	8	3	NaN	NaN	NaN	0.47445	1	16034	16034		20.513	2.5436	1	55467	+		27980	10625	16090	16549	22363	22363					0.018478931415529587
VCGCCGYL	8	Unmodified	_VCGCCGYL_					0	0	0		ENST00000342619.10_1_2:183943517-183943586:+|nuORF	ENST00000342619.10_1_2:183943517-183943586:+|nuORF	ENST00000342619.10_1_2:183943517-183943586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.1557024674999	2	409.155702	816.296852	2.343	0.00095863	-2.727	-0.0011158	-0.38404	-0.00015713	409.15582273595544	21.729	0.048183	21.715	21.691	21.74	-0.013897	1425	28	0.7599118	0.016682267	0.75839233	309.50864	0	6.794647						40	3	2	NaN	NaN	NaN	0.84876	1	4859	4859		0.39566	0	1	2288.1			27981	6545	16091	16550	22364	22364					-0.11864455012096187
VCGIVLGFL	9	Unmodified	_VCGIVLGFL_					0	0	0		nc|ENSG00000292357|P15509-8|CSF2RA;ENSG00000198223|ENST00000381529|CSF2RA;nc|ENSG00000292357|P15509-2|CSF2RA;nc|ENSG00000292357|P15509-7|CSF2RA	nc|ENSG00000292357|P15509-8|CSF2RA	nc|ENSG00000292357|P15509-8|CSF2RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5273867677002	1	920.527387	919.52011	1.4122	0.0013	0.53937	0.0004965	1.9516	0.0017965	920.5263634670819	34.685	0.096439	34.684	34.636	34.732	-0.0006485	279	40	1.4535767	0.023126125	1.4520572	295.4731	0	4.7009277						70	5	2	NaN	NaN	NaN	0.48931	1	6284	6284		10.052	0	1	6298.3			27982	5763	16092	16551	22365	22365					0.05713105036170418
VCGVAKGG	8	Unmodified	_VCGVAKGG_					0	0	0		ENST00000484672.5_1_22:19898593-19905733:-|nuORF;ENST00000496729.2_1_22:19902718-19929326:-|nuORF;nc|ENSG00000184470|Q9NNW7-3|TXNRD2;ENST00000494454.5_1_22:19864636-19903590:-|nuORF;ENST00000400518.5_2_22:19864636-19919892:-|nuORF;nc|ENSG00000184470|Q9NNW7-2|TXNRD2;ENST00000400525.6_1_22:19864636-19929326:-|nuORF;ENSG00000184470|ENST00000400521|TXNRD2	ENST00000484672.5_1_22:19898593-19905733:-|nuORF	ENST00000484672.5_1_22:19898593-19905733:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.0666	0.00073635	2.8423	0.0019622	3.9089	0.0026985	690.3630223562101	33.142	0.048267	33.142	33.142	33.19	0	738	79	1.179155	0.047030926	1.179155	240.8677	0	9.607101						99	3	2	NaN	NaN	NaN	0.84887	1	3009	3009		0.32989	0	1	9554.9			27983	5353	16093	16552	22366	22366					-0.004057427887460108
VCHSPFLLPG	10	Unmodified	_VCHSPFLLPG_					0	0	0			REV__ENST00000243298.2_1_X:103080673-103087036:-|nuORF	REV__ENST00000243298.2_1_X:103080673-103087036:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2785947952001	2	535.278595	1068.54264	1.5115	0.00080906	-8.3013	-0.0044435	-6.7898	-0.0036344	535.2735928040546	32.732	0.096508	32.732	32.707	32.804	0	1275	64	0.85233563	0.038698435	0.85233563	345.7961	0	15.700134						123	5	2	NaN	NaN	NaN	0.66268	1	11495	11495		10.605	0.85897	1	15767	+		27984	11496	16094	16553	22367	22367					0.011107044337904881
VCLALGILI	9	Unmodified	_VCLALGILI_					0	0	0		nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF	nc|ENSG00000046651|O75665-2|OFD1	nc|ENSG00000046651|O75665-2|OFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5743369603002	1	914.574337	913.56706	1.5929	0.0014568	0.57505	0.00052593	2.1679	0.0019827	914.574616137438	36.639	0.12049	36.639	36.591	36.712	0	246	55	1.4731345	0.0319885	1.4731345	299.47748	0	6.5030212						191	6	3	NaN	NaN	NaN	0.16059	1	6305	6305		27.861	0	1	23767			27985	7261	16095	16554	22368	22368					0.10681964587308812
VCLALGILI	9	Unmodified	_VCLALGILI_					0	0	0		nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF	nc|ENSG00000046651|O75665-2|OFD1	nc|ENSG00000046651|O75665-2|OFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	914.5743369603002	1	914.574337	913.56706	1.5503	0.0014179	-0.28374	-0.0002595	1.2665	0.0011583	914.5744558713142	36.613	0.12024	36.615	36.591	36.711	0.0016785	246	58	1.4731345	0.033763885	1.4716152	299.4775	0	6.8639526						165	6	3	NaN	NaN	NaN	0.26823	1	6184	6184		20.952	0	1	17901			27986	7261	16095	16554	22369	22369					0.10681964587308812
VCLDTFVEG	9	Unmodified	_VCLDTFVEG_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4550096856002	1	982.45501	981.447733	2.0789	0.0020424	-4.1906	-0.0041171	-2.1117	-0.0020747	982.4483088322121	56.565	0.023968	56.565	56.565	56.589	0	267	43	1.4606913	0.024898529	1.4606913	296.64285	0	5.056488						44	2	2	NaN	NaN	NaN	0.66196	1	7925	7925		2.4615	0	1	3848.1	+		27987	10344	16096	16555	22370	22370					-0.043732738280596095
VCLDTFVEG	9	Unmodified						0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	982.45501	981.447733	2.0789	0.0020424	-4.1906	-0.0041171	-2.1117	-0.0020747	982.4483088322121	56.565	0.023968	56.565	56.565	56.589	0	267	43	1.4606913	0.024898529	1.4606913	296.64285		5.056488	0.0012668	0.00072385	-0.0010184	NaN	2.4615	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3848.1	+		27988	10344	16096	16555							-0.043732738280596095
VCLNVSSTL	9	Unmodified	_VCLNVSSTL_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;ENSG00000143493|ENST00000366994|INTS7;INTS7|p.Q859H|1|0.08|ENSG00000143493|chr1:211944808-211944808|C/G|missense_variant;nc|ENSG00000143493|Q9NVH2-2|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	468.2469603158	2	468.24696	934.479368	0.97377	0.00045596	-2.341	-0.0010962	-1.3672	-0.0006402	468.24612788319416	14.453	0.23984	14.453	14.357	14.597	0	1344	43	0.8098828	0.025870264	0.8098828	329.17197	0	10.514801						193	11	3	NaN	NaN	NaN	0.35794	1	6712	6712		15.463	0	1	16475			27989	3428	16097	16556	22371	22371					0.00950718925878391
VCPASFLID	9	Unmodified	_VCPASFLID_					0	0	0		ENST00000336576.9_2_2:220150715-220151078:+|nuORF	ENST00000336576.9_2_2:220150715-220151078:+|nuORF	ENST00000336576.9_2_2:220150715-220151078:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4808305056	1	964.480831	963.473554	1.7238	0.0016626	3.3039	0.0031865	5.0277	0.0048491	964.4850160813176	25.226	0.21711	25.214	25.117	25.334	-0.012011	276	91	1.4553556	0.05338788	1.4538362	295.63556	0	10.845032						312	10	4	NaN	NaN	NaN	0.24994	1	7276	7276		22.126	1.5709	1	56267			27990	6525	16098	16557	22372	22372					-0.009643795857982695
VCSSGPSC	8	Unmodified	_VCSSGPSC_					0	0	0			REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.2749368300001	1	739.274937	738.26766	1.5057	0.0011131	5.0214	0.0037122	6.5271	0.0048253	739.2787024650785	36.637	0.19245	36.639	36.567	36.759	0.0016747	603	85	1.2603331	0.05037856	1.2588136	257.11768	0	10.277618						352	9	3	NaN	NaN	NaN	0.8439	1	3812	3812		3.1533	0	1	34804	+		27991	12789	16099	16558	22373	22373					-0.11194276036701467
VCSSGPSC	8	Unmodified						0	0	0			REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	739.274937	738.26766	1.5057	0.0011131	5.0214	0.0037122	6.5271	0.0048253	739.2787024650785	36.637	0.19245	36.639	36.567	36.759	0.0016747	603	85	1.2603331	0.05037856	1.2588136	257.11768		10.277618	-0.012207	0.00019354	0.00014014	NaN	3.1533	352	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34804	+		27992	12789	16099	16558							-0.11194276036701467
VCTEAVFL	8	Unmodified	_VCTEAVFL_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.4437167178002	1	881.443717	880.43644	1.2113	0.0010677	0.28515	0.00025134	1.4965	0.0013191	881.444117394107	27.132	0.12066	27.122	27.074	27.194	-0.010126	399	46	1.382264	0.026797771	1.3807446	281.16107	0	5.450836						105	6	2	NaN	NaN	NaN	0.77489	1	5684	5684		12.588	0	1	10969			27993	4246	16100	16559	22374	22374					-0.008560511315408803
VCVDNSVI	8	Unmodified	_VCVDNSVI_					0	0	0		nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3;ENST00000478245.1_1_10:97452671-97453656:-|nuORF;nc|ENSG00000119977|Q6NUS6-4|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.4182302488001	1	848.41823	847.410954	1.7702	0.0015019	0.84104	0.00071355	2.6112	0.0022154	848.4194142532915	21.681	0.096388	21.681	21.633	21.73	0	453	52	1.3500742	0.030432343	1.3500742	274.77805	0	6.1938477						81	5	2	NaN	NaN	NaN	0.6053	1	5355	5355		24.961	0	1	7215.3			27994	2244	16101	16560	22375	22375					-0.018855256539723086
VCVGAGVM	8	Unmodified	_VCVGAGVM_					0	0	0			REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3527932205001	1	735.352793	734.345517	1.6198	0.0011911	7.9127	0.0058186	9.5325	0.0070098	735.3584396378063	21.754	0.096312	21.754	21.705	21.802	0	609	43	1.2567334	0.025197268	1.2567334	256.4083	0	5.1409607						69	5	2	NaN	NaN	NaN	0.84651	1	3816	3816		1.6704	0	1	4861.6	+		27995	12390	16102	16561	22376	22376					-0.032282183806728426
VCVRTLEP	8	Unmodified	_VCVRTLEP_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	458.74967018025006	2	458.74967	915.484787	-0.41173	-0.00018888	5.805	0.002663	5.3933	0.0024742	458.7531735451489	55.891	0.048016	55.89	55.866	55.914	-0.00059128	1311	52	0.83019954	0.031388342	0.8286801	337.53098	0	12.761444						60	3	2	NaN	NaN	NaN	0.84455	1	6215	6215		2.7852	0	1	5172.1			27996	4456	16103	16562	22377	22377					0.023664425083666174
VDAEVIAI	8	Unmodified	_VDAEVIAI_					0	0	0		tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	829.4665606498999	1	829.466561	828.459284	2.3052	0.0019121	-3.2312	-0.0026802	-0.92594	-0.00076803	829.463758080595	28.194	0.02412	28.194	28.17	28.194	0	441	37	1.3572328	0.021471381	1.3572328	276.3359	0	4.3716125						34	2	2	NaN	NaN	NaN	0.77489	1	5121	5121		12.588	0	1	2374.5			27997	13911	16104	16563	22378	22378					0.038192912575482296
VDAGATGG	8	Unmodified	_VDAGATGG_					0	0	0		ENST00000533173.1_1_8:145676847-145677204:-|nuORF	ENST00000533173.1_1_8:145676847-145677204:-|nuORF	ENST00000533173.1_1_8:145676847-145677204:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.2994953216001	1	647.299495	646.292219	0.78817	0.00051018	6.9356	0.0044894	7.7238	0.0049996	647.3039593453113	33.623	0.12063	33.621	33.597	33.718	-0.0018501	762	133	1.1646824	0.079616666	1.163163	238.21973	0	16.284485						319	6	3	NaN	NaN	NaN	0.80692	1	1851	1851		8.2903	0	1	36606			27998	7458	16105	16564	22379	22379					-0.04507556567318716
VDAIIERF	8	Unmodified	_VDAIIERF_					0	0	0			REV__ENST00000523727.1_1_5:170308890-170323149:+|nuORF	REV__ENST00000523727.1_1_5:170308890-170323149:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.7689171784	2	481.768917	961.523281	1.4137	0.0006811	-9.6001	-0.0046251	-8.1864	-0.003944	481.76400572476757	33.118	0.024143	33.118	33.094	33.118	0	1275	40	0.85233563	0.023969114	0.85233563	346.28546	0	9.738159						37	2	2	NaN	NaN	NaN	0.84727	1	7375	7375		1.2418	0	1	2050.7	+		27999	11250	16106	16565	22380	22380					0.040980714145121055
VDALDTLF	8	Unmodified	_VDALDTLF_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1;nc|ENSG00000111885|P33908-2|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.4614752720001	1	893.461475	892.454199	1.731	0.0015466	-0.68934	-0.0006159	1.0416	0.00093065	893.4619415766388	32.658	0.072403	32.655	32.607	32.679	-0.0031052	348	40	1.412609	0.023185253	1.4110895	287.2739	0	4.7150574						53	4	2	NaN	NaN	NaN	0.83211	1	5841	5841		4.9097	0	1	3230.7			28000	1844	16107	16566	22381	22381					0.0036698739496614508
VDASCASHL	9	Unmodified	_VDASCASHL_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	902.4036428170999	1	902.403643	901.396366	2.4875	0.0022447	7.2197	0.0065151	9.7072	0.0087598	902.411451716914	25.949	0.12067	25.938	25.914	26.034	-0.0116	342	112	1.4161754	0.06603789	1.4146559	287.95578	0	13.427704						180	6	3	NaN	NaN	NaN	0.39244	1	5979	5979		14.042	0.30454	1	15793	+		28001	13229	16108	16567	22382	22382					-0.05827597802135642
VDASCASHL	9	Unmodified						0	0	0			REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	902.403643	901.396366	2.1944	0.0019802	7.0852	0.0063937	9.2796	0.008374	902.4103406166591	25.95	0.072403	25.95	25.901	25.974	0	339	85	1.4179583	0.04996133	1.4179583	288.3183		10.158813	0.0059092	-6.2619E-05	0.0016512	NaN	14.042	137	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13708	+		28002	13229	16108	16567							-0.05827597802135642
VDASCASHL	9	Unmodified						0	0	0			REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	902.403643	901.396366	2.4875	0.0022447	7.2197	0.0065151	9.7072	0.0087598	902.411451716914	25.949	0.12067	25.938	25.914	26.034	-0.0116	342	112	1.4161754	0.06603789	1.4146559	287.95578		13.427704	-0.0059092	5.8731E-05	-0.0016512	NaN	14.042	180	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15793	+		28003	13229	16108	16567							-0.05827597802135642
VDASGGEF	8	Unmodified	_VDASGGEF_					0	0	0		tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	781.3362747584	1	781.336275	780.328998	2.0333	0.0015887	-2.1597	-0.0016875	-0.12641	-9.8769E-05	781.3347306471991	16.806	0.047949	16.806	16.806	16.854	0	606	37	1.2585332	0.021595359	1.2585332	256.49814	0	4.401306						49	3	2	NaN	NaN	NaN	0.80071	1	4489	4489		9.1232	0	1	4282.3			28004	13937	16109	16568	22383	22383					-0.06995304741428754
VDASGGEF	8	Unmodified	_VDASGGEF_					0	0	0		tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	tr|U7T0D3|U7T0D3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00938PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	781.3362747584	1	781.336275	780.328998	2.1685	0.0016944	-0.31897	-0.00024922	1.8496	0.0014451	781.3359375766304	16.491	0.67115	16.478	16.31	16.981	-0.012995	600	64	1.2621325	0.03778994	1.2606131	257.2317	0	7.7018585						620	29	3	NaN	NaN	NaN	0.65075	1	4410	4410		22.126	1.5709	1	97756			28005	13937	16109	16568	22384	22384					-0.06995304741428754
VDCYVAICCPL	11	Unmodified	_VDCYVAICCPL_					0	0	0		ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7688880281	2	599.768888	1197.52322	0.84092	0.00050436	5.005	0.0030018	5.8459	0.0035062	600.2741793125891	30.51	0.072411	30.505	30.456	30.529	-0.0057545	1170	52	0.91673553	0.031215787	0.9152161	371.41312	0	12.647003						89	4	2	NaN	NaN	NaN	0.76654	1	15735	15735		2.5994	1.094	1	7333			28006	4542	16110	16569	22385	22385					-0.06763755963652329
VDEHEPSM	8	Unmodified	_VDEHEPSM_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.1949247453	2	472.194925	942.375297	1.7655	0.00083364	-3.7659	-0.0017782	-2.0004	-0.00094459	472.19438746541977	14.165	0.048042	14.165	14.141	14.189	0	1347	28	0.8080346	0.016635358	0.8080346	328.38092	0	6.7605286						37	3	2	NaN	NaN	NaN	0.82797	1	6862	6862		5.4659	0	1	2259.1			28007	4371	16111	16570	22386	22386					-0.09819607901636118
VDFSFEVI	8	Unmodified	_VDFSFEVI_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4771253362002	1	955.477125	954.469849	1.4554	0.0013906	-0.32905	-0.0003144	1.1264	0.0010762	955.4754309754759	35.288	0.072445	35.287	35.263	35.336	-4.5776E-05	246	52	1.4731345	0.030216217	1.4716152	299.28693	0	6.1388245						71	4	2	NaN	NaN	NaN	0.45125	1	7044	7044		33.698	2.1373	1	4829.3			28008	5518	16112	16571	22387	22387					-0.009207260879861678
VDGEIEAVL	9	Unmodified	_VDGEIEAVL_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL;nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4935036819	1	944.493504	943.486227	1.6674	0.0015748	-4.6212	-0.0043647	-2.9539	-0.0027899	944.4880770916209	24.623	0.048241	24.61	24.586	24.634	-0.012394	330	52	1.4233059	0.030303001	1.4217864	289.21146	0	6.1574707						66	3	2	NaN	NaN	NaN	0.17818	1	6766	6766		26.732	0	1	6851.2			28009	3446	16113	16572	22388	22388					0.012223550780959158
VDGHVLMA	8	Unmodified	_VDGHVLMA_					0	0	0			REV__ENSG00000180998|ENST00000321662|GPR137C	REV__ENSG00000180998|ENST00000321662|GPR137C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.4236499777002	1	841.42365	840.416374	1.5477	0.0013022	-2.6223	-0.0022065	-1.0746	-0.00090422	841.4220587175674	21.344	0.1203	21.344	21.32	21.44	0	420	43	1.3697531	0.025031209	1.3697531	278.8203	0	5.0952454						96	6	2	NaN	NaN	NaN	0.82332	1	5271	5271		6.0903	0	1	7875.2	+		28010	10836	16114	16573	22389	22389					-0.01021802071500133
VDGQVGPP	8	Unmodified	_VDGQVGPP_					0	0	0		nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-11|COL13A1	nc|ENSG00000197467|Q5TAT6-11|COL13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3886446799002	1	768.388645	767.381368	1.7689	0.0013592	-0.82681	-0.00063531	0.94213	0.00072392	768.387727425264	22.236	0.1206	22.236	22.187	22.308	0	576	49	1.2765218	0.028766274	1.2765218	260.24017	0	5.8644714						105	6	2	NaN	NaN	NaN	0.78264	1	4321	4321		11.548	0	1	11290			28011	5705	16115	16574	22390	22390					-0.011627216077954472
VDIGEEEPL	9	Unmodified	_VDIGEEEPL_					0	0	0		tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4833329261002	1	1000.48333	999.476056	2.1909	0.002192	-0.87729	-0.00087772	1.3136	0.0013142	1000.4848180265695	21.416	0.048092	21.402	21.378	21.426	-0.014004	297	49	1.4428991	0.028476596	1.4413797	292.95633	0	5.7816772						61	3	2	NaN	NaN	NaN	0.23112	1	8375	8375		23.334	4.2161	1	3998.8			28012	13934	16116	16575	22391	22391					-0.023702526471197416
VDIGEEEPL	9	Unmodified						0	0	0		tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	tr|U7T073|U7T073_FUSNUPhenylalanine--tRNAligasebetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pheTPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1000.48333	999.476056	1.8311	0.001832	-2.4365	-0.0024376	-0.60531	-0.0006056	1000.481251360974	21.416	0.072279	21.416	21.392	21.464	0	300	52	1.4411188	0.03025794	1.4411188	292.59488		6.1433716	0.0069505	-0.00065324	-0.00013041	NaN	23.334	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4769.9			28013	13934	16116	16575							-0.023702526471197416
VDKETLQHRR	10	Unmodified	_VDKETLQHRR_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.35474228305	2	641.354742	1280.69493	1.5476	0.00099259	-1.2924	-0.00082886	0.25529	0.00016373	641.3538815023174	29.377	0.072395	29.377	29.353	29.425	0	1122	52	0.9460945	0.03116864	0.9460945	383.02417	0	12.618561						137	4	3	NaN	NaN	NaN	0.72631	1	18437	18437		6.2502	1.5211	1	15212			28014	3105	16117	16576	22392	22392					0.06581196434876802
VDLIIKIYFK	10	Unmodified	_VDLIIKIYFK_					0	0	0		CYB5R2|p.N91Kfs*8|1|0.14|ENSG00000166394|chr11:7669320-7669321|-/T|frameshift_variant;CYB5R2|p.M102Dfs*40|1|0.16|ENSG00000166394|chr11:7669290-7669291|-/T|frameshift_variant;ENST00000534443.5_1_11:7688946-7694113:-|nuORF;nc|ENSG00000166394|Q6BCY4-2|CYB5R2;ENSG00000166394|ENST00000299498|CYB5R2	CYB5R2|p.N91Kfs*8|1|0.14|ENSG00000166394|chr11:7669320-7669321|-/T|frameshift_variant	CYB5R2|p.N91Kfs*8|1|0.14|ENSG00000166394|chr11:7669320-7669321|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3891994896001	2	626.389199	1250.76385	0.71929	0.00045056	-3.8471	-0.0024098	-3.1278	-0.0019592	626.8881730779347	39.502	0.096165	39.502	39.502	39.598	0	1224	70	0.883646	0.04234737	0.883646	357.83337	0	17.14862						196	5	2	NaN	NaN	NaN	0.77928	1	17792	17792		0.69115	0	1	19332			28015	239	16118	16577	22393	22393					0.14849467681892747
VDLLAVKK	8	Unmodified	_VDLLAVKK_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	885.5767798013002	1	885.57678	884.569503	1.9203	0.0017006	-0.3626	-0.00032111	1.5577	0.0013795	885.5764847361703	58.005	0.048065	58.005	57.981	58.029	0	315	49	1.4322147	0.028497696	1.4322147	291.3004	0	5.7962036						62	3	2	NaN	NaN	NaN	0.84887	1	5870	5870		0.32989	0	1	8491.7			28016	1049	16119	16578	22394	22394					0.12260136316615444
VDLLGIRLHW	10	Unmodified	_VDLLGIRLHW_					0	0	0		ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.3587650284501	2	611.358765	1220.70298	0.95837	0.00058591	-6.1377	-0.0037524	-5.1794	-0.0031665	611.3552652432713	32.394	0.24126	32.394	32.345	32.587	0	1071	106	0.977233	0.06401199	0.977233	395.83792	0	25.92868						509	11	2	NaN	NaN	NaN	0.77884	1	17005	17005		0.79988	0	1	81495			28017	2786	16120	16579	22395	22395					0.10145375422325742
VDLLGIRLHW	10	Unmodified						0	0	0		ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	ENST00000466526.1_1_1:160147295-160152563:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.358765	1220.70298	0.49572	0.00030306	-4.9127	-0.0030034	-4.417	-0.0027004	611.3555541761457	32.393	0.26545	32.389	32.341	32.606	-0.0037613	1074	127	0.9754029	0.07677722	0.97388345	395.09662		31.099365	-0.0024245	0.00060217	-0.0016748	NaN	0.79988	572	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73068			28018	2786	16120	16579							0.10145375422325742
VDMNREIGKLQ	11	Unmodified	_VDMNREIGKLQ_					0	0	0			REV__ENSG00000139372|ENST00000392872|TDG	REV__ENSG00000139372|ENST00000392872|TDG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.8453614794502	2	651.845361	1301.67617	1.588	0.0010351	4.4169	0.0028791	6.0049	0.0039142	651.8484499525158	16.446	0.071945	16.446	16.422	16.494	0	1083	40	0.9699114	0.023801506	0.9699114	392.59885	0	9.634308						79	4	3	NaN	NaN	NaN	0.6085	1	18811	18811		13.463	0.89334	1	9783	+		28019	9768	16121	16580	22396	22396					0.037398987488359126
VDNERYFKRI	10	Unmodified	_VDNERYFKRI_					0	0	0		tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.35949330995	2	670.359493	1338.70443	1.2349	0.00082784	-1.3337	-0.00089406	-0.098789	-6.6224E-05	670.3593436705738	37.479	0.072262	37.482	37.458	37.53	0.0028229	1185	52	0.90755045	0.03122592	0.906031	367.2498	0	12.635895						87	4	2	NaN	NaN	NaN	0.77513	1	18525	18525		1.7022	0.19679	1	7546			28020	13903	16122	16581	22397	22397					0.04862964720405216
VDPNAAGV	8	Unmodified	_VDPNAAGV_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.3729946157	1	742.372995	741.365718	1.8967	0.0014081	4.4432	0.0032985	6.3399	0.0047066	742.376482214874	23.103	0.12051	23.103	23.055	23.176	0	618	55	1.2513325	0.032410502	1.2513325	255.26207	0	6.6114807						132	6	2	NaN	NaN	NaN	0.76406	1	3938	3938		14.042	4.9184	1	12167			28021	6097	16123	16582	22398	22398					-0.015310081248571805
VDPNAAGV	8	Unmodified						0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	742.372995	741.365718	1.9454	0.0014442	5.1076	0.0037918	7.053	0.005236	742.3766315506617	23.103	0.096376	23.09	23.065	23.162	-0.013294	618	49	1.2513325	0.028809309	1.2498131	255.26207		5.876877	-0.0069351	0.00021656	-0.00075972	NaN	14.042	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8792.9			28022	6097	16123	16582							-0.015310081248571805
VDPSPALVLL	10	Unmodified	_VDPSPALVLL_					0	0	0			REV__ENST00000495607.5_1_22:50752441-50754573:-|nuORF	REV__ENST00000495607.5_1_22:50752441-50754573:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.3078751634	2	512.307875	1022.6012	1.9721	0.0010103	-1.4932	-0.00076497	0.47896	0.00024538	512.3069762321607	26.143	0.24133	26.131	26.035	26.276	-0.011137	1215	133	0.8891654	0.08106941	0.88764596	360.94424	0	32.908966						775	11	4	NaN	NaN	NaN	0.10964	1	9284	9284		44.638	2.7999	1	172910	+		28023	11267	16124	16583	22399	22399					0.09080084279889888
VDQHGSGA	8	Unmodified	_VDQHGSGA_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.3427571198001	1	770.342757	769.335481	2.1005	0.0016181	-9.7142	-0.0074833	-7.6137	-0.0058652	770.3355064510874	28.436	0.28958	28.436	28.388	28.677	0	579	127	1.2747238	0.07559216	1.2747238	259.86206	0	15.410019						733	13	4	NaN	NaN	NaN	0.57691	1	4346	4346		26.732	3.3971	1	225720			28024	5891	16125	16584	22400	22400					-0.05841366790036773
VDQHGSGA	8	Unmodified	_VDQHGSGA_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.3427571198001	1	770.342757	769.335481	1.7128	0.0013194	-10.046	-0.007739	-8.3334	-0.0064195	770.3349708102324	28.459	0.31369	28.451	28.378	28.692	-0.0083504	576	130	1.2765218	0.07738781	1.2750024	260.2286	0	15.776077						722	14	4	NaN	NaN	NaN	0.57691	1	4271	4271		26.732	6.1761	1	234810			28025	5891	16125	16584	22401	22401					-0.05841366790036773
VDSRRSPEGHS	11	Unmodified	_VDSRRSPEGHS_					0	0	0		ENST00000471311.1_1_16:2615672-2620486:+|nuORF	ENST00000471311.1_1_16:2615672-2620486:+|nuORF	ENST00000471311.1_1_16:2615672-2620486:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.7972571939001	2	613.797257	1225.57996	1.1539	0.00070829	-0.71491	-0.00043881	0.43903	0.00026948	613.7963197898052	16.518	0.14382	16.518	16.494	16.638	0	1164	43	0.9204082	0.025708497	0.9204082	372.80386	0	10.413025						115	7	2	NaN	NaN	NaN	0.75376	1	17117	17117		3.9281	0.35833	1	9983.4			28026	7152	16126	16585	22402	22402					-0.023805327668924292
VDSRRSPEGHS	11	Unmodified						0	0	0		ENST00000471311.1_1_16:2615672-2620486:+|nuORF	ENST00000471311.1_1_16:2615672-2620486:+|nuORF	ENST00000471311.1_1_16:2615672-2620486:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	613.797257	1225.57996	2.0303	0.0012462	-2.2851	-0.0014026	-0.25482	-0.00015641	613.7971546050867	16.539	0.047897	16.526	16.478	16.526	-0.012995	1170	34	0.91673553	0.02020061	0.9152161	371.31628		8.182098	0.0039644	-0.0013346	-0.002596	NaN	3.9281	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3305.2			28027	7152	16126	16585							-0.023805327668924292
VDSSFEVSL	9	Unmodified	_VDSSFEVSL_					0	0	0		tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1	tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1	tr|U7SUB6|U7SUB6_FUSNUFormate/nitritetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01175PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4727682398001	1	982.472768	981.465492	2.2974	0.0022572	-0.73989	-0.00072692	1.5575	0.0015302	982.472221722817	25.588	0.21712	25.588	25.539	25.757	0	270	58	1.458913	0.033792615	1.458913	296.2816	0	6.862732						238	10	3	NaN	NaN	NaN	0.14301	1	7931	7931		29.598	2.8668	1	22147			28028	13884	16127	16586	22403	22403					-0.025982353015592707
VDSSLEYYSFY	11	Unmodified	_VDSSLEYYSFY_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.80080820255	2	686.800808	1371.58706	1.9831	0.001362	-1.6758	-0.0011509	0.30735	0.00021109	686.8006546445421	28.484	0.048294	28.484	28.46	28.508	0	1089	58	0.96624947	0.03480178	0.96624947	390.90717	0	14.079468						99	3	2	NaN	NaN	NaN	0.76488	1	19811	19811		2.8895	0.29002	1	11570			28029	2203	16128	16587	22404	22404					-0.08386657729715807
VDTGSMRRL	9	Unmodified	_VDTGSMRRL_					0	0	0			REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7742079090501	2	517.774208	1033.53386	1.6524	0.00085559	2.5243	0.001307	4.1767	0.0021626	517.7764647910565	12.102	0.071977	12.094	12.046	12.118	-0.0081863	1284	31	0.8468043	0.018440783	0.8452849	343.70004	0	7.4847107						55	4	2	NaN	NaN	NaN	0.41766	1	9722	9722		13.003	1.8325	1	4159.5	+		28030	9386	16129	16588	22405	22405					0.01843730797304488
VDTGSMRRL	9	Unmodified						0	0	0			REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.774208	1033.53386	1.6896	0.00087483	2.1834	0.0011305	3.873	0.0020053	517.7745734832472	12.148	0.14411	12.148	12.076	12.22	0	1287	37	0.8449601	0.022131324	0.8449601	342.95154		8.9826355	0.027153	-0.0001616	-0.00016237	NaN	13.003	84	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6846.8	+		28031	9386	16129	16588							0.01843730797304488
VDTGSMRRL	9	Unmodified						0	0	0			REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.774208	1033.53386	1.6524	0.00085559	2.5243	0.001307	4.1767	0.0021626	517.7764647910565	12.102	0.071977	12.094	12.046	12.118	-0.0081863	1284	31	0.8468043	0.018440783	0.8452849	343.70004		7.4847107	-0.027153	0.00019147	0.00016237	NaN	13.003	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4159.5	+		28032	9386	16129	16588							0.01843730797304488
VDVASLAVGL	10	Unmodified	_VDVASLAVGL_					0	0	0		ENST00000597121.5_1_19:50086773-50093643:+|nuORF;ENSG00000126460|ENST00000246794|PRRG2	ENST00000597121.5_1_19:50086773-50093643:+|nuORF	ENST00000597121.5_1_19:50086773-50093643:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5458736034001	1	943.545874	942.538597	1.7411	0.0016428	-4.6749	-0.004411	-2.9338	-0.0027681	943.5429174630535	29.955	0.048246	29.949	29.925	29.973	-0.0064106	270	49	1.458913	0.028461456	1.4573935	296.451	0	5.783386						60	3	2	NaN	NaN	NaN	0.67523	1	6755	6755		9.746	2.2056	1	4624.7			28033	2504	16130	16589	22406	22406					0.06502938211713172
VDVGEQHW	8	Unmodified	_VDVGEQHW_					0	0	0			REV__ENST00000507859.1_1_5:96121490-96126328:-|nuORF	REV__ENST00000507859.1_1_5:96121490-96126328:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.22487381549996	2	485.224874	968.435195	1.9368	0.00093979	-2.8972	-0.0014058	-0.96041	-0.00046601	485.2234803822192	22.645	0.16886	22.645	22.621	22.79	0	1335	49	0.8154261	0.029556334	0.8154261	331.25656	0	12.006897						130	8	2	NaN	NaN	NaN	0.76406	1	7555	7555		14.042	4.2956	1	11630	+		28034	10331	16131	16590	22407	22407					-0.050285491760973855
VDVKEPLVV	9	Unmodified	_VDVKEPLVV_					0	0	0			REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.3000501313	2	499.30005	996.585547	1.4008	0.00069942	-3.6458	-0.0018203	-2.245	-0.0011209	499.29909823075445	20.453	0.12018	20.453	20.405	20.525	0	1290	49	0.84311575	0.029518008	0.84311575	342.36966	0	11.986603						123	6	4	NaN	NaN	NaN	0.59509	1	8457	8457		5.6942	0.78442	1	12318	+		28035	10199	16132	16591	22408	22408					0.08711797762850892
VDVKEPLVV	9	Unmodified						0	0	0			REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.30005	996.585547	1.4008	0.00069942	-3.6458	-0.0018203	-2.245	-0.0011209	499.29909823075445	20.453	0.12018	20.453	20.405	20.525	0	1290	49	0.84311575	0.029518008	0.84311575	342.36966		11.986603	0.0069811	-6.9326E-05	0.00075972	NaN	5.6942	123	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12318	+		28036	10199	16132	16591							0.08711797762850892
VDVKEPLVV	9	Unmodified						0	0	0			REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	REV__ENST00000498151.1_1_21:48069432-48069756:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	499.30005	996.585547	1.0891	0.00054381	-3.5216	-0.0017583	-2.4325	-0.0012145	499.299521146763	20.453	0.096218	20.439	20.415	20.511	-0.014143	1290	37	0.84311575	0.022136092	0.8415963	342.36966		8.988953	-0.0069811	5.4664E-05	-0.00075972	NaN	5.6942	126	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13779	+		28037	10199	16132	16591							0.08711797762850892
VEAAGLCG	8	Unmodified	_VEAAGLCG_					0	0	0		nc|ENSG00000135374|Q9UKW6-3|ELF5;ENSG00000135374|ENST00000257832|ELF5;nc|ENSG00000135374|Q9UKW6|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3392516463	1	719.339252	718.331975	1.5627	0.0011241	-2.2252	-0.0016007	-0.66258	-0.00047662	719.3381969299702	28.58	0.096491	28.572	28.572	28.668	-0.0083485	657	40	1.2279087	0.02343893	1.2263893	250.62961	0	4.7841187						61	5	2	NaN	NaN	NaN	0.82332	1	3493	3493		6.0903	0	1	3960.1			28038	2937	16133	16592	22409	22409					-0.03845752888264542
VEAAGLCG	8	Unmodified						0	0	0		nc|ENSG00000135374|Q9UKW6-3|ELF5;ENSG00000135374|ENST00000257832|ELF5;nc|ENSG00000135374|Q9UKW6|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.339252	718.331975	1.4257	0.0010256	1.0308	0.00074149	2.4565	0.0017671	719.3400673835071	28.605	0.072399	28.605	28.556	28.629	0	660	37	1.2261056	0.021637082	1.2261056	250.26155		4.4163513	0.016608	0.0012479	-0.00014187	NaN	6.0903	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3641.2			28039	2937	16133	16592							-0.03845752888264542
VEAGATPP	8	Unmodified	_VEAGATPP_					0	0	0		nc|ENSG00000219200|Q6P5S7-2|RNASEK	nc|ENSG00000219200|Q6P5S7-2|RNASEK	nc|ENSG00000219200|Q6P5S7-2|RNASEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3777456426	1	741.377746	740.370469	2.2135	0.0016411	4.316	0.0031998	6.5295	0.0048408	741.3810647638815	26.046	0.14483	26.035	26.011	26.156	-0.011135	615	64	1.2531329	0.037810087	1.2516136	255.6356	0	7.7131653						208	7	3	NaN	NaN	NaN	0.80692	1	3841	3841		8.2903	2.2	1	29677			28040	8038	16134	16593	22410	22410					-0.01010123982098321
VEAIIQSMTKE	11	Unmodified	_VEAIIQSMTKE_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.8883226541999	3	416.888323	1247.64314	1.344	0.00056029	-2.4342	-0.0010148	-1.0902	-0.00045451	417.22144899361365	14.477	0.11988	14.477	14.429	14.549	0	1467	61	0.7339432	0.03711003	0.7339432	445.82483	0	22.542023						202	6	3	NaN	NaN	NaN	0.69656	1	17724	17724		3.6122	0	1	13076			28041	14013	16135	16594	22411	22411					0.02922271906095375
VEANYFKTK	9	Unmodified	_VEANYFKTK_					0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.29275641545	2	550.292756	1098.57096	1.632	0.00089808	-2.0734	-0.001141	-0.44137	-0.00024288	550.2914595064373	24.574	0.26534	24.562	24.538	24.803	-0.012392	1242	85	0.87260187	0.051550567	0.8710824	353.89502	0	20.906982						551	12	5	NaN	NaN	NaN	0.66822	1	12459	12459		1.9246	0	1	258530	+		28042	12546	16136	16595	22412	22412					0.02561725614691568
VEANYFKTK	9	Unmodified						0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.292756	1098.57096	1.4748	0.00081156	-2.3823	-0.001311	-0.90756	-0.00049942	550.2916714482186	24.55	0.21701	24.55	24.526	24.743	0	1242	112	0.87260187	0.06808728	0.87260187	353.89502		27.613678	-0.0057949	-0.00016618	0.00075972	NaN	1.9246	582	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278170	+		28043	12546	16136	16595							0.02561725614691568
VEANYFKTK	9	Unmodified						0	0	0			REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	REV__ENST00000508304.5_1_5:64920917-64948411:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.292756	1098.57096	1.632	0.00089808	-2.0734	-0.001141	-0.44137	-0.00024288	550.2914595064373	24.574	0.26534	24.562	24.538	24.803	-0.012392	1242	85	0.87260187	0.051550567	0.8710824	353.89502		20.906982	0.0057949	0.00017387	-0.00075972	NaN	1.9246	551	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258530	+		28044	12546	16136	16595							0.02561725614691568
VECAGTYM	8	Unmodified	_VECAGTYM_					0	0	0			REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	REV__tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.3481017731	1	873.348102	872.340825	1.4236	0.0012433	-1.4219	-0.0012419	0.0016191	1.4141E-06	873.3475732381632	28.943	0.096521	28.943	28.894	28.991	0	405	37	1.3786905	0.021441579	1.3786905	280.47424	0	4.361969						80	5	2	NaN	NaN	NaN	0.77489	1	5692	5692		12.588	3.4647	1	5828.5	+		28045	13620	16137	16596	22413	22413					-0.10045147314099268
VECNIRSN	8	Unmodified	_VECNIRSN_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4410909559	1	934.441091	933.433814	0.032265	3.015E-05	3.1408	0.0029349	3.173	0.002965	934.4440215079622	54.57	0.12054	54.569	54.497	54.617	-0.00061798	321	88	1.4286518	0.051627517	1.4271324	290.34268	0	10.492157						110	6	2	NaN	NaN	NaN	0.8421	1	6537	6537		3.5698	0.78459	1	6491.9			28046	5004	16138	16597	22414	22414					-0.035565065365062765
VEDAPPIDL	9	Unmodified	_VEDAPPIDL_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.4935036819	1	968.493504	967.486227	1.351	0.0013084	-0.4348	-0.0004211	0.91621	0.00088734	968.4945101125584	32.08	0.096497	32.08	32.056	32.152	0	327	43	1.425088	0.024948835	1.425088	289.4702	0	5.067688						81	5	2	NaN	NaN	NaN	0.27442	1	7540	7540		20.555	5.3801	1	7007.3			28047	8101	16139	16598	22415	22415					0.0011835507809792034
VEDDEDSLEQG	11	Unmodified	_VEDDEDSLEQG_					0	0	0			REV__nc|ENSG00000135679|Q00987-2|MDM2	REV__nc|ENSG00000135679|Q00987-2|MDM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.2491367728	2	618.249137	1234.48372	1.3984	0.00086456	-5.2433	-0.0032417	-3.8449	-0.0023771	618.246016311997	18.866	0.072071	18.852	18.804	18.876	-0.014059	1185	52	0.90755045	0.031229258	0.906031	367.56644	0	12.648163						90	4	3	NaN	NaN	NaN	0.71564	1	16648	16648		6.4299	0.17972	1	6881.4	+		28048	9631	16140	16599	22416	22416					-0.12414189908190565
VEDDEDSLEQG	11	Unmodified						0	0	0			REV__nc|ENSG00000135679|Q00987-2|MDM2	REV__nc|ENSG00000135679|Q00987-2|MDM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.249137	1234.48372	1.6391	0.0010133	-4.0202	-0.0024855	-2.3811	-0.0014721	618.2454519564235	18.844	0.096041	18.844	18.796	18.892	0	1188	46	0.90571284	0.027558208	0.90571284	366.82217		11.161316	-0.0036464	0.00095041	-0.00015909	NaN	6.4299	93	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5706.7	+		28049	9631	16140	16599							-0.12414189908190565
VEDDEDSLEQG	11	Unmodified						0	0	0			REV__nc|ENSG00000135679|Q00987-2|MDM2	REV__nc|ENSG00000135679|Q00987-2|MDM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.249137	1234.48372	1.3984	0.00086456	-5.2433	-0.0032417	-3.8449	-0.0023771	618.246016311997	18.866	0.072071	18.852	18.804	18.876	-0.014059	1185	52	0.90755045	0.031229258	0.906031	367.56644		12.648163	0.0036464	-0.00056203	0.00015909	NaN	6.4299	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6881.4	+		28050	9631	16140	16599							-0.12414189908190565
VEDELVKKY	9	Unmodified	_VEDELVKKY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8056966152001	2	561.805697	1121.59684	1.6485	0.00092611	-2.8789	-0.0016174	-1.2305	-0.00069128	561.8040784076829	15.27	0.096044	15.27	15.246	15.342	0	1215	37	0.8891654	0.022073984	0.8891654	360.52084	0	8.950104						100	5	3	NaN	NaN	NaN	0.05973	1	13757	13757		40.957	15.156	1	9723.6			28051	386	16141	16600	22417	22417					0.04090575066334168
VEDELVKKY	9	Unmodified	_VEDELVKKY_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.87288989900003	3	374.87289	1121.59684	1.6483	0.00061789	-4.3408	-0.0016273	-2.6926	-0.0010094	374.87140582165574	15.292	0.16786	15.28	15.232	15.4	-0.012202	1455	43	0.7413668	0.025977015	0.73984736	450.88678	0	15.798798						118	8	2	NaN	NaN	NaN	0.3106	1	13349	13349		18.233	9.9887	1	11832			28052	386	16141	16600	22418	22418					0.04090575066334168
VEDKDLVL	8	Unmodified	_VEDKDLVL_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.514239124	1	930.514239	929.506963	1.0375	0.00096545	-0.6278	-0.00058418	0.40974	0.00038127	930.5138359256811	30.462	0.14477	30.456	30.432	30.577	-0.0057545	309	79	1.435777	0.0462842	1.4342575	291.80865	0	9.40686						322	7	3	NaN	NaN	NaN	0.3434	1	6462	6462		39.459	2.8723	1	98904	+		28053	10968	16142	16601	22419	22419					0.039389454577644756
VEDKDLVL	8	Unmodified						0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	930.514239	929.506963	1.5683	0.0014594	-2.3827	-0.0022171	-0.81433	-0.00075775	930.5145658204603	30.777	0.072416	30.777	30.728	30.801	0	306	40	1.4375578	0.02315557	1.4375578	292.1706		4.7061768	0.16025	-0.0015515	0.0016501	NaN	39.459	37	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2792.6	+		28054	10968	16142	16601							0.039389454577644756
VEDKDLVL	8	Unmodified						0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.514239	929.506963	1.0375	0.00096545	-0.6278	-0.00058418	0.40974	0.00038127	930.5138359256811	30.462	0.14477	30.456	30.432	30.577	-0.0057545	309	79	1.435777	0.0462842	1.4342575	291.80865		9.40686	-0.16025	8.1385E-05	-0.0016501	NaN	39.459	322	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98904	+		28055	10968	16142	16601							0.039389454577644756
VEDTELDRQDL	11	Unmodified	_VEDTELDRQDL_					0	0	0			REV__ENSG00000156273|ENST00000286800|BACH1	REV__ENSG00000156273|ENST00000286800|BACH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.81752089925	2	666.817521	1331.62049	1.4327	0.00095533	-0.42386	-0.00028264	1.0088	0.00067269	666.8170302762513	26.819	0.24181	26.819	26.722	26.964	0	1110	64	0.95342636	0.038490057	0.95342636	385.8349	0	15.576263						241	11	3	NaN	NaN	NaN	0.6875	1	19279	19279		8.2775	0.59495	1	35209	+		28056	8159	16143	16602	22420	22420					-0.03205655957822273
VEDYKMDFGDT	11	Unmodified	_VEDYKMDFGDT_					0	0	0			REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	REV__tr|U7ST45|U7ST45_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01283PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.5201874901999	3	440.520187	1318.53873	1.0027	0.00044173	-10.537	-0.0046416	-9.5339	-0.0041999	440.51558261644186	14.981	0.072073	14.981	14.933	15.005	0	1473	31	0.7302302	0.018569112	0.7302302	443.30872	0	11.272949						61	4	2	NaN	NaN	NaN	0.77466	1	19086	19086		0.33451	0	1	6044.5	+		28057	13485	16144	16603	22421	22421					-0.10779474641276465
VEEALTLV	8	Unmodified	_VEEALTLV_					0	0	0		JAKMIP3|p.Y190Sfs*28|1|0.12|ENSG00000188385|chr10:132117510-132117511|AC/-|frameshift_variant;nc|ENSG00000188385|Q5VZ66|JAKMIP3;ENSG00000188385|ENST00000684848|JAKMIP3	JAKMIP3|p.Y190Sfs*28|1|0.12|ENSG00000188385|chr10:132117510-132117511|AC/-|frameshift_variant	JAKMIP3|p.Y190Sfs*28|1|0.12|ENSG00000188385|chr10:132117510-132117511|AC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.4927754004	1	873.492775	872.485499	1.3203	0.0011532	-0.6581	-0.00057484	0.66216	0.00057839	873.4921286836756	29.401	0.12072	29.401	29.377	29.498	0	381	49	1.3929803	0.028558373	1.3929803	283.38055	0	5.809784						81	6	2	NaN	NaN	NaN	0.80071	1	5704	5704		9.1232	0	1	5368.1			28058	5549	16145	16604	22422	22422					0.044155604290381234
VEEAVQALI	9	Unmodified	_VEEAVQALI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.5407882255	1	971.540788	970.533512	1.0584	0.0010283	0.56891	0.00055272	1.6273	0.001581	971.5417533486742	30.124	0.21721	30.118	29.997	30.214	-0.0064106	264	142	1.4624695	0.08354783	1.46095	297.0502	0	16.969849						313	10	2	NaN	NaN	NaN	0.10363	1	7486	7486		35.296	0	1	36936			28059	406	16146	16605	22423	22423					0.0470663434908829
VEEDEDQR	8	Unmodified	_VEEDEDQR_					0	0	0		nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	nc|ENSG00000022976|A8K0R7|ZNF839	nc|ENSG00000022976|A8K0R7|ZNF839	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.21744271389997	2	510.217443	1018.42033	2.1344	0.001089	-11.541	-0.0058885	-9.4067	-0.0047995	510.2122690465982	17.621	0.14383	17.621	17.573	17.717	0	1353	52	0.8043377	0.031425714	0.8043377	326.52747	0	12.757538						185	7	3	NaN	NaN	NaN	0.65542	1	9298	9298		21.835	0	1	14016			28060	464	16147	16606	22424	22424					-0.08814085834751495
VEEDEDQR	8	Unmodified						0	0	0		nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	nc|ENSG00000022976|A8K0R7|ZNF839	nc|ENSG00000022976|A8K0R7|ZNF839	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	510.217443	1018.42033	1.571	0.00080156	-10.895	-0.0055586	-9.3236	-0.0047571	510.21232962755766	17.618	0.16783	17.604	17.58	17.748	-0.013786	1356	67	0.8024889	0.04066646	0.8009695	325.77695		16.50888	-0.0084363	0.00033729	-0.0016841	NaN	21.835	161	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13397			28061	464	16147	16606							-0.08814085834751495
VEEEADPVL	9	Unmodified	_VEEEADPVL_					0	0	0			REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4833329260999	1	1000.48333	999.476056	1.5313	0.001532	1.5742	0.001575	3.1055	0.003107	1000.4847292912069	24.815	0.28953	24.803	24.682	24.972	-0.012394	213	73	1.4926696	0.042610645	1.4911501	303.06137	0	8.651367						348	13	2	NaN	NaN	NaN	0.094712	1	8376	8376		36.586	2.1477	1	47907	+		28062	9299	16148	16607	22425	22425					-0.02370252647142479
VEEHGAGS	8	Unmodified	_VEEHGAGS_					0	0	0		CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant;ENSG00000079432|ENST00000681038|CIC	CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant	CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.3424227688001	1	785.342423	784.335146	1.6079	0.0012628	-9.5833	-0.0075262	-7.9754	-0.0062634	785.3348553010505	31.258	0.28957	31.253	31.205	31.495	-0.0050716	552	160	1.2908988	0.09535456	1.2893794	263.07126	0	19.432205						850	13	4	NaN	NaN	NaN	0.74229	1	4463	4463		16.417	1.2413	1	302910			28063	165	16149	16608	22426	22426					-0.06564786509886744
VEEIEEASLQ	10	Unmodified	_VEEIEEASLQ_					0	0	0		ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7798757952	2	573.779876	1145.5452	1.5019	0.00086179	1.2985	0.00074508	2.8005	0.0016069	573.7806310357118	16.826	0.16776	16.813	16.765	16.933	-0.013294	1263	91	0.85970795	0.055244684	0.8581885	348.48853	0	22.393799						410	8	4	NaN	NaN	NaN	0.66626	1	14158	14158		10.36	0.74852	1	61719			28064	6831	16150	16609	22427	22427					-0.021752134182406735
VEEPVYSTR	9	Unmodified	_VEEPVYSTR_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.5367654800998	1	1079.53677	1078.52949	1.5513	0.0016747	-7.3725	-0.0079589	-5.8212	-0.0062842	1079.5297933733225	28.074	0.16892	28.074	27.953	28.122	0	132	64	1.5405227	0.037163854	1.5405227	312.4651	0	7.537964						173	8	2	NaN	NaN	NaN	0.29681	1	11909	11909		19.118	2.5342	1	17659	+		28065	10033	16151	16610	22428	22428					-0.006634551446268233
VEEPVYSTR	9	Unmodified	_VEEPVYSTR_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.5367654800998	1	1079.53677	1078.52949	1.5214	0.0016424	-6.5919	-0.0071162	-5.0705	-0.0054738	1079.530807001684	28.073	0.19307	28.064	27.943	28.137	-0.0089779	132	61	1.5405227	0.03538847	1.5390033	312.4651	0	7.1778564						232	9	3	NaN	NaN	NaN	0.29681	1	11603	11603		19.118	2.5342	1	19290	+		28066	10033	16151	16610	22429	22429					-0.006634551446268233
VEEPVYSTR	9	Unmodified						0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1079.53677	1078.52949	1.5513	0.0016747	-7.3725	-0.0079589	-5.8212	-0.0062842	1079.5297933733225	28.074	0.16892	28.074	27.953	28.122	0	132	64	1.5405227	0.037163854	1.5405227	312.4651		7.537964	0.0048523	-0.0003469	0.00075972	NaN	19.118	173	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17659	+		28067	10033	16151	16610							-0.006634551446268233
VEEPVYSTR	9	Unmodified						0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1079.53677	1078.52949	1.5214	0.0016424	-6.5919	-0.0071162	-5.0705	-0.0054738	1079.530807001684	28.073	0.19307	28.064	27.943	28.137	-0.0089779	132	61	1.5405227	0.03538847	1.5390033	312.4651		7.1778564	-0.0048523	0.0004958	-0.00075972	NaN	19.118	232	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19290	+		28068	10033	16151	16610							-0.006634551446268233
VEEQYEESFW	10	Unmodified	_VEEQYEESFW_					0	0	0		ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.2827826249	2	673.282783	1344.55101	0.93378	0.0006287	-0.27788	-0.00018709	0.6559	0.00044161	673.2825670048518	29.835	0.28953	29.828	29.731	30.021	-0.0070667	1125	91	0.9442611	0.0549888	0.94274163	382.08813	0	22.250793						572	13	4	NaN	NaN	NaN	0.60686	1	18609	18609		14.425	0.96197	1	103420			28069	6100	16152	16611	22430	22430					-0.10748114906550654
VEETGWLH	8	Unmodified	_VEETGWLH_					0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.73507436104995	2	485.735074	969.455596	1.1989	0.00058237	-10.62	-0.0051584	-9.4208	-0.004576	485.73029296909726	20.742	0.16854	20.728	20.704	20.873	-0.014088	1503	64	0.711653	0.039031148	0.71013355	289.09583	0	15.855682						258	8	4	NaN	NaN	NaN	0.76633	1	7431	7431		13.737	3.6855	1	37828	+		28070	8625	16153	16612	22431	22431					-0.03035378516290166
VEETGWLH	8	Unmodified						0	0	0			REV__ENSG00000077044|ENST00000264057|DGKD	REV__ENSG00000077044|ENST00000264057|DGKD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	485.735074	969.455596	1.1989	0.00058237	-10.62	-0.0051584	-9.4208	-0.004576	485.73029296909726	20.742	0.16854	20.728	20.704	20.873	-0.014088	1503	64	0.711653	0.039031148	0.71013355	289.09583		15.855682	-0.0068816	0.00082848	-0.00075972	NaN	13.737	258	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37828	+		28071	8625	16153	16612							-0.03035378516290166
VEFATLDR	8	Unmodified	_VEFATLDR_					0	0	0		ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4941723839001	1	950.494172	949.486896	2.0472	0.0019458	2.9497	0.0028037	4.9969	0.0047495	950.496593772744	26.336	0.048256	26.336	26.336	26.384	0	321	82	1.4286518	0.048092484	1.4286518	290.2713	0	9.771362						98	3	2	NaN	NaN	NaN	0.63138	1	7077	7077		23.334	0	1	9138.4			28072	3931	16154	16613	22432	22432					0.010131945178159185
VEFGSIVL	8	Unmodified	_VEFGSIVL_					0	0	0			REV__ENST00000472127.1_1_3:42672642-42674322:+|nuORF	REV__ENST00000472127.1_1_3:42672642-42674322:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.4872960920001	1	863.487296	862.48002	1.2275	0.00106	-0.25891	-0.00022356	0.96862	0.0008364	863.4869907684363	31.694	0.072428	31.694	31.646	31.718	0	387	46	1.389409	0.026789188	1.389409	282.7049	0	5.450836						66	4	2	NaN	NaN	NaN	0.54545	1	5566	5566		28.667	4.8161	1	5231	+		28073	9172	16155	16614	22433	22433					0.04327881637232167
VEFLAPHNVGV	11	Unmodified	_VEFLAPHNVGV_					0	0	0		PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.31930551695	2	591.319306	1180.62406	0.64344	0.00038048	1.884	0.001114	2.5274	0.0014945	591.3192108921032	32.441	0.16892	32.438	32.39	32.558	-0.0031052	1182	52	0.9093879	0.031232655	0.90786844	368.4963	0	12.655884						144	8	3	NaN	NaN	NaN	0.6085	1	15265	15265		13.463	3.1029	1	11349			28074	8092	16156	16615	22434	22434					0.04097103397361934
VEFLAPHNVGV	11	Unmodified						0	0	0		PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	PER2|p.D235N|1|0.23|ENSG00000132326|chr2:238271381-238271381|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.319306	1180.62406	1.1546	0.00068273	2.767	0.0016362	3.9216	0.0023189	591.3200734920619	32.37	0.072392	32.37	32.37	32.442	0	1185	37	0.90755045	0.022050142	0.90755045	367.75177		8.935028	-0.034097	0.00058168	-0.00015899	NaN	13.463	85	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6729.1			28075	8092	16156	16615							0.04097103397361934
VEGAGGHG	8	Unmodified	_VEGAGGHG_					0	0	0			REV__ENST00000392025.5_1_19:41081737-41082043:+|nuORF	REV__ENST00000392025.5_1_19:41081737-41082043:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3107287099001	1	683.310729	682.303452	2.1283	0.0014543	-6.359	-0.0043452	-4.2308	-0.0028909	683.3062954799627	17.381	0.38355	17.381	17.261	17.645	0	738	79	1.179155	0.04703605	1.179155	240.91618	0	9.610046						447	17	2	NaN	NaN	NaN	0.8439	1	2885	2885		3.1533	0	1	58876	+		28076	11978	16157	16616	22435	22435					-0.05040734473186603
VEGAGGHG	8	Unmodified						0	0	0			REV__ENST00000392025.5_1_19:41081737-41082043:+|nuORF	REV__ENST00000392025.5_1_19:41081737-41082043:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	683.310729	682.303452	2.1283	0.0014543	-6.359	-0.0043452	-4.2308	-0.0028909	683.3062954799627	17.381	0.38355	17.381	17.261	17.645	0	738	79	1.179155	0.04703605	1.179155	240.91618		9.610046	0.020458	-0.00024402	0.00075972	NaN	3.1533	447	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58876	+		28077	11978	16157	16616							-0.05040734473186603
VEGAVPGP	8	Unmodified	_VEGAVPGP_					0	0	0			REV__ENST00000355803.8_1_16:1359233-1359413:+|nuORF	REV__ENST00000355803.8_1_16:1359233-1359413:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3828310205001	1	725.382831	724.375555	1.2136	0.00088034	5.0805	0.0036853	6.2942	0.0045657	725.3862376370489	34.901	0.19296	34.901	34.853	35.046	-4.5776E-05	606	73	1.2585332	0.043204665	1.2570138	256.84027	0	8.817169						307	9	3	NaN	NaN	NaN	0.84207	1	3594	3594		3.5732	0	1	49147	+		28078	11816	16158	16617	22436	22436					0.0023417988053324734
VEGFQAEEI	9	Unmodified	_VEGFQAEEI_					0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.24547187184993	2	511.245472	1020.47639	0.92138	0.00047105	-3.2618	-0.0016676	-2.3404	-0.0011965	511.2441647955335	29.786	0.14475	29.779	29.755	29.9	-0.0070648	1320	40	0.824661	0.024000287	0.8231416	334.76886	0	9.742828						127	7	3	NaN	NaN	NaN	0.25448	1	9184	9184		21.835	2.6714	1	11313			28079	342	16159	16618	22437	22437					-0.03302832927295185
VEGFQAEEI	9	Unmodified						0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.245472	1020.47639	1.9033	0.00097308	-3.5647	-0.0018224	-1.6613	-0.00084935	511.2437195864243	29.787	0.096556	29.787	29.763	29.86	0	1323	34	0.8228144	0.02031231	0.8228144	334.01923		8.245728	0.0039734	-0.00015235	-0.00016357	NaN	21.835	94	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7484.1			28080	342	16159	16618							-0.03302832927295185
VEGPVGPG	8	Unmodified	_VEGPVGPG_					0	0	0			REV__nc|ENSG00000102882|P27361-2|MAPK3	REV__nc|ENSG00000102882|P27361-2|MAPK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.3671809563001	1	711.367181	710.359904	1.2788	0.00090973	5.2631	0.003744	6.542	0.0046537	711.3712139049967	36.421	0.26508	36.422	36.374	36.639	0.0016747	621	67	1.2495319	0.039621234	1.2480124	255.09666	0	8.088821						284	12	2	NaN	NaN	NaN	0.8439	1	3369	3369		3.1533	0	1	51447	+		28081	8894	16160	16619	22438	22438					-0.006861066365217994
VEGSLKIKG	9	Unmodified	_VEGSLKIKG_					0	0	0			REV__tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1	REV__tr|U7T8L1|U7T8L1_FUSNUPhagetailsheathproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00090PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.78456724259996	2	465.784567	929.554582	1.1196	0.00052151	-2.2887	-0.001066	-1.1691	-0.00054454	465.7842925707036	13.517	0.072046	13.507	13.459	13.531	-0.010098	1338	31	0.81357855	0.018478692	0.8120591	330.69946	0	7.511139						45	4	2	NaN	NaN	NaN	0.64666	1	6467	6467		3.5698	0	1	3512.5	+		28082	13638	16161	16620	22439	22439					0.08698644448600135
VEIDEHVEF	9	Unmodified	_VEIDEHVEF_					0	0	0			REV__ENSG00000040731|ENST00000264463|CDH10	REV__ENSG00000040731|ENST00000264463|CDH10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.76402876575	2	558.764029	1115.5135	1.2112	0.00067679	-6.6406	-0.0037105	-5.4293	-0.0030337	558.7598776681045	27.036	0.16895	27.036	27.012	27.181	0	1272	40	0.854179	0.023961365	0.854179	346.35822	0	9.716034						125	8	3	NaN	NaN	NaN	0.56671	1	13486	13486		6.8632	0	1	10111	+		28083	8463	16162	16621	22440	22440					-0.03963161381534519
VEIYRYHD	8	Unmodified	_VEIYRYHD_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7669058057	2	547.766906	1093.51926	1.215	0.00066553	-10.482	-0.0057415	-9.2666	-0.0050759	548.2626846491444	34.492	0.16882	34.491	34.467	34.636	-0.0006485	1275	76	0.85233563	0.046064615	0.8508162	345.6956	0	18.683167						428	8	6	NaN	NaN	NaN	0.49126	1	12218	12218		31.561	3.7722	1	52288			28084	5516	16163	16622	22441	22441					-0.023760180791896346
VEKLQGKA	8	Unmodified	_VEKLQGKA_					0	0	0		ENST00000556170.5_1_14:75573136-75593624:-|nuORF;ENSG00000119638|ENST00000238616|NEK9	ENST00000556170.5_1_14:75573136-75593624:-|nuORF	ENST00000556170.5_1_14:75573136-75593624:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.76363483525	2	436.763635	871.512717	1.8578	0.00081143	-3.4715	-0.0015162	-1.6137	-0.0007048	436.7622012263995	16.059	0.11979	16.047	15.999	16.118	-0.012611	1488	37	0.7209441	0.022295058	0.71942466	293.32996	0	9.071167						92	6	2	NaN	NaN	NaN	0.528	1	5550	5550		29.598	0	1	10264			28085	2221	16164	16623	22442	22442					0.071820887600893
VEKVQMLV	8	Unmodified	_VEKVQMLV_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.2755207900001	2	473.275521	944.536489	1.1186	0.00052938	6.7152	0.0031781	7.8337	0.0037075	473.2783576241938	19.659	0.14437	19.645	19.573	19.717	-0.014143	1542	31	0.6874725	0.018615544	0.6859531	279.3759	0	7.5650024						73	7	2	NaN	NaN	NaN	0.81216	1	6798	6798		7.5876	1.3374	1	4181.3			28086	5440	16165	16624	22443	22443					0.06200186202272562
VELGCHPRAP	10	Unmodified	_VELGCHPRAP_					0	0	0		ENST00000381297.9_1_X:1584011-1584302:-|nuORF	ENST00000381297.9_1_X:1584011-1584302:-|nuORF	ENST00000381297.9_1_X:1584011-1584302:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.776750598	2	539.776751	1077.53895	1.0172	0.00054907	-10.177	-0.0054932	-9.1595	-0.0049441	539.7715751699095	26.77	0.1207	26.759	26.735	26.856	-0.010645	1200	46	0.89836043	0.027576089	0.896841	364.42984	0	11.186554						167	6	3	NaN	NaN	NaN	0.64158	1	11551	11551		12.049	1.6885	1	27795			28087	6739	16166	16625	22444	22444					0.0032803465990127734
VELGELLAT	9	Unmodified	_VELGELLAT_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	944.5298891882002	1	944.529889	943.522613	1.6214	0.0015315	-0.7624	-0.00072011	0.859	0.00081135	944.5296631051991	27.76	0.096535	27.76	27.688	27.784	0	291	82	1.446459	0.048066974	1.446459	293.91595	0	9.767059						184	5	2	NaN	NaN	NaN	0.062072	1	6914	6914		41.785	5.198	1	41669	+		28088	9028	16167	16626	22445	22445					0.04859231974819522
VELGELLAT	9	Unmodified						0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	944.529889	943.522613	1.6214	0.0015315	-0.7624	-0.00072011	0.859	0.00081135	944.5296631051991	27.76	0.096535	27.76	27.688	27.784	0	291	82	1.446459	0.048066974	1.446459	293.91595		9.767059	0.0051869	0.00029308	-0.00013013	NaN	41.785	184	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41669	+		28089	9028	16167	16626							0.04859231974819522
VELGELLAT	9	Unmodified						0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.529889	943.522613	1.2553	0.0011857	-1.5085	-0.0014248	-0.25314	-0.0002391	944.5297429387837	27.759	0.096521	27.75	27.702	27.798	-0.009552	288	73	1.4482387	0.042723894	1.4467193	294.2776		8.681366	-0.0051869	-0.00041161	0.00013013	NaN	41.785	238	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38960	+		28090	9028	16167	16626							0.04859231974819522
VELRELLNPVV	11	Unmodified	_VELRELLNPVV_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.5906054318666	3	427.590605	1279.74999	2.1636	0.00092515	0.37057	0.00015845	2.5342	0.0010836	427.5899308530611	25.226	0.048277	25.214	25.189	25.238	-0.012011	1317	25	0.8265074	0.01477021	0.82498795	501.91412	0	8.969513						44	3	2	NaN	NaN	NaN	0.78071	1	17606	17606		0.11792	0	1	2921.6			28091	6112	16168	16627	22446	22446					0.12130190182779188
VELRELLNPVV	11	Unmodified						0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	427.590605	1279.74999	1.6369	0.00069992	0.8203	0.00035075	2.4572	0.0010507	427.59064013504565	25.129	0.048265	25.129	25.105	25.153	0	1311	25	0.83019954	0.014766991	0.83019954	504.15625		8.96756	-0.042135	0.00022433	0.0026058	NaN	0.11792	41	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3076.2			28092	6112	16168	16627							0.12130190182779188
VELWIYLG	8	Unmodified	_VELWIYLG_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5451453219	1	992.545145	991.537869	1.8955	0.0018814	5.4492	0.0054086	7.3447	0.00729	992.5497778657443	34.372	0.096325	34.372	34.324	34.421	0	189	79	1.5068626	0.046132088	1.5068626	305.97632	0	9.367371						141	5	3	NaN	NaN	NaN	0.77489	1	8283	8283		12.588	1.9829	1	25330			28093	4336	16169	16628	22447	22447					0.04176143562654033
VELWWVLW	8	Unmodified	_VELWWVLW_					0	0	0			REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.8053026847	2	565.805303	1129.59605	1.6595	0.00093897	-6.0129	-0.0034021	-4.3533	-0.0024631	565.80255023335	29.039	0.19311	29.039	28.918	29.112	0	1218	58	0.8873258	0.034952402	0.8873258	359.74405	0	14.170563						134	5	3	NaN	NaN	NaN	0.82332	1	14070	14070		6.0903	2.8787	1	21123	+		28094	12638	16170	16629	22448	22448					0.036438252079278755
VELYTQSLL	9	Unmodified	_VELYTQSLL_					0	0	0			REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1065.5826530402	1	1065.58265	1064.57538	1.5874	0.0016916	-3.2232	-0.0034346	-1.6357	-0.001743	1065.578206845781	30.511	0.072418	30.511	30.487	30.56	0	90	58	1.5652816	0.033581734	1.5652816	317.53952	0	6.8125305						127	4	3	NaN	NaN	NaN	0.41766	1	11340	11340		13.003	0	1	14256	+		28095	10182	16171	16630	22449	22449					0.04567190037619184
VELYTQSLL	9	Unmodified						0	0	0			REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1065.58265	1064.57538	1.5874	0.0016916	-3.2232	-0.0034346	-1.6357	-0.001743	1065.578206845781	30.511	0.072418	30.511	30.487	30.56	0	90	58	1.5652816	0.033581734	1.5652816	317.53952		6.8125305	0.015432	-0.00072103	0.0016434	NaN	13.003	127	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14256	+		28096	10182	16171	16630							0.04567190037619184
VELYTQSLL	9	Unmodified						0	0	0			REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	REV__ENST00000492336.5_1_21:37692562-37711220:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1065.58265	1064.57538	0.94673	0.0010088	-2.0387	-0.0021724	-1.0919	-0.0011635	1065.5798103924808	30.486	0.096523	30.48	30.456	30.553	-0.0057545	93	67	1.5635144	0.03888619	1.5619949	317.181		7.888611	-0.015432	0.00054119	-0.0016434	NaN	13.003	135	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15305	+		28097	10182	16171	16630							0.04567190037619184
VEMTGKHQL	9	Unmodified	_VEMTGKHQL_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5349913411	1	1042.53499	1041.52771	1.2392	0.0012919	-9.1821	-0.0095726	-7.9429	-0.0082808	1042.5256346306167	35.119	0.096512	35.119	35.07	35.167	-4.5776E-05	135	49	1.5387528	0.028328896	1.5372335	312.2462	0	5.748535						100	5	2	NaN	NaN	NaN	0.25448	1	10066	10066		21.835	1.2795	1	7950.3			28098	1633	16172	16631	22450	22450					0.008612125657919023
VEMYDPTRNEW	11	Oxidation (M)	_VEM(Oxidation (M))YDPTRNEW_		VEM(1)YDPTRNEW		VEM(59)YDPTRNEW	0	0	1		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.3140911408	2	728.314091	1454.61363	1.5119	0.0011011	-0.051899	-3.7799E-05	1.46	0.0010633	728.3145638566841	20.021	0.14422	20.021	19.948	20.093	0	1095	34	0.9625867	0.02014625	0.9625867	389.20346	0	8.145752						102	7	2	NaN	NaN	NaN	0.025235	1	20397	20397		59.273	44.419	1	8558.2			28099	2095	16173	16632	22451	22451		240			-0.09549292110045826
VEMYDPTRNEW	11	Oxidation (M)	_VEM(Oxidation (M))YDPTRNEW_		VEM(1)YDPTRNEW		VEM(51)YDPTRNEW	0	0	1		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.3140911408	2	728.314091	1454.61363	1.7808	0.001297	-1.8103	-0.0013185	-0.029457	-2.1454E-05	728.3130970478592	20.044	0.12035	20.03	19.958	20.078	-0.014141	1098	31	0.960755	0.0183177	0.9592356	388.46286	0	7.406433						94	6	3	NaN	NaN	NaN	0.045077	1	19421	19421		51.086	45.167	1	5907.2			28100	2095	16173	16632	22452	22452		240			-0.09549292110045826
VEMYDPTRNEW	11	Unmodified	_VEMYDPTRNEW_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.31663382975	2	720.316634	1438.61871	1.5429	0.0011114	-0.52813	-0.00038042	1.0148	0.00073099	720.3137782783317	22.862	0.1446	22.848	22.776	22.921	-0.01354	1101	52	0.95892316	0.031128407	0.9574037	387.7628	0	12.587494						81	7	2	NaN	NaN	NaN	0.43809	1	19350	19350		20.688	15.238	1	6897.2			28101	2095	16173	16633	22453	22453					-0.08304988247414258
VEMYDPTRNEW	11	Unmodified						0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	720.316634	1438.61871	1.5995	0.0011522	-1.8314	-0.0013192	-0.23183	-0.00016699	720.3154532660384	22.838	0.096487	22.838	22.79	22.887	0	1098	46	0.960755	0.027472138	0.960755	388.50354		11.108978	-0.0049181	-0.00079094	0.0016757	NaN	20.688	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7115.7			28102	2095	16173	16633							-0.08304988247414258
VENGHSGA	8	Unmodified	_VENGHSGA_					0	0	0			REV__ENST00000506603.5_1_5:79034050-79057839:+|nuORF	REV__ENST00000506603.5_1_5:79034050-79057839:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	770.3427571198	1	770.342757	769.335481	1.4936	0.0011506	-9.6979	-0.0074707	-8.2043	-0.0063201	770.3350707728135	30.269	0.26541	30.263	30.214	30.48	-0.0064106	582	115	1.2729256	0.06837821	1.2714062	259.49548	0	13.939423						565	12	4	NaN	NaN	NaN	0.77489	1	4272	4272		12.588	4.2976	1	164590	+		28103	10332	16174	16634	22454	22454					-0.058413667900481414
VENGHSGA	8	Unmodified						0	0	0			REV__ENST00000506603.5_1_5:79034050-79057839:+|nuORF	REV__ENST00000506603.5_1_5:79034050-79057839:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	770.342757	769.335481	1.4936	0.0011506	-9.6979	-0.0074707	-8.2043	-0.0063201	770.3350707728135	30.269	0.26541	30.263	30.214	30.48	-0.0064106	582	115	1.2729256	0.06837821	1.2714062	259.49548		13.939423	-0.015747	9.2041E-05	-0.00075972	NaN	12.588	565	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164590	+		28104	10332	16174	16634							-0.058413667900481414
VENGPDKK	8	Unmodified	_VENGPDKK_					0	0	0			REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF	REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	886.4628722555	1	886.462872	885.455596	1.6389	0.0014528	3.5137	0.0031147	5.1526	0.0045676	886.4660746917758	29.232	0.12065	29.232	29.184	29.305	0	402	100	1.3804773	0.05899906	1.3804773	280.77316	0	11.999725						253	6	2	NaN	NaN	NaN	0.63138	1	5877	5877		23.334	2.779	1	18891	+		28105	11185	16175	16635	22455	22455					0.008286214837085026
VENGPSPG	8	Unmodified	_VENGPSPG_					0	0	0		nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.3522591736	1	756.352259	755.344983	1.2782	0.00096679	4.8972	0.003704	6.1754	0.0046708	756.3561706724965	30.631	0.193	30.625	30.577	30.77	-0.0057545	576	52	1.2765218	0.03056252	1.2750024	260.31296	0	6.232422						165	9	2	NaN	NaN	NaN	0.78264	1	4081	4081		11.548	0	1	15013			28106	5360	16176	16636	22456	22456					-0.0424759850452574
VENGPSPG	8	Unmodified						0	0	0		nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.352259	755.344983	1.1758	0.00088932	4.35	0.0032901	5.5258	0.0041794	756.3554140132985	30.632	0.14481	30.632	30.584	30.728	0	576	55	1.2765218	0.032358527	1.2765218	260.31296		6.5986633	0.0034002	-0.00023498	0.00075972	NaN	11.548	160	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13261			28107	5360	16176	16636							-0.0424759850452574
VENLYSMLF	9	Unmodified	_VENLYSMLF_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2757177552501	2	558.275718	1114.53688	1.3878	0.00077479	1.4257	0.00079595	2.8135	0.0015707	558.2776459785575	35.94	0.19281	35.94	35.916	36.109	0	1218	76	0.8873258	0.045984983	0.8873258	359.8026	0	18.646484						479	9	5	NaN	NaN	NaN	0.33629	1	13458	13458		16.584	2.5426	1	97680	+		28108	9639	16177	16637	22457	22457					-0.01580438868541023
VEPGCGDM	8	Unmodified	_VEPGCGDM_					0	0	0		ENSG00000073861|ENST00000177694|TBX21	ENSG00000073861|ENST00000177694|TBX21	ENSG00000073861|ENST00000177694|TBX21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	807.3011515805	1	807.301152	806.293875	1.8038	0.0014562	6.3591	0.0051337	8.1629	0.0065899	807.3067577952811	34.396	0.14457	34.396	34.324	34.469	0	456	58	1.348284	0.034023523	1.348284	274.63696	0	6.930359						136	7	2	NaN	NaN	NaN	0.82797	1	4830	4830		5.4659	1.8926	1	9438.9			28109	816	16178	16638	22458	22458					-0.11702006865243675
VEPPGAPEPI	10	Unmodified	_VEPPGAPEPI_					0	0	0			REV__ENST00000329743.3_1_22:17640282-17646278:+|nuORF	REV__ENST00000329743.3_1_22:17640282-17646278:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.5251381613001	1	1005.52514	1004.51786	1.2714	0.0012784	-2.1204	-0.0021321	-0.84902	-0.00085371	1005.5230395452363	27.832	0.096592	27.822	27.798	27.895	-0.009552	228	97	1.4837929	0.056862473	1.4822735	301.23856	0	11.544159						179	5	2	NaN	NaN	NaN	0.64158	1	8590	8590		12.049	0	1	16109	+		28110	11745	16179	16639	22459	22459					0.01578347832048621
VEPSLDPK	8	Unmodified	_VEPSLDPK_					0	0	0			REV__GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	REV__GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	884.4723743093	1	884.472374	883.465098	1.9643	0.0017374	-1.9011	-0.0016815	0.063167	5.5869E-05	884.4706307014408	26.505	0.048262	26.505	26.481	26.529	0	381	58	1.3929803	0.033933043	1.3929803	283.3259	0	6.901825						91	3	2	NaN	NaN	NaN	0.76406	1	5843	5843		14.042	1.0388	1	9484.7	+		28111	11428	16180	16640	22460	22460					0.018703897692375904
VEQSFFNDW	9	Unmodified	_VEQSFFNDW_					0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1171.5054653517	1	1171.50547	1170.49819	2.8731	0.0033659	-1.8031	-0.0021123	1.0701	0.0012536	1171.5038901876121	29.98	0.096531	29.98	29.932	30.029	0	87	49	1.5670487	0.028271914	1.5670487	317.52963	0	5.7286987						124	5	3	NaN	NaN	NaN	0.38254	1	15497	15497		20.513	9.343	1	11669			28112	2900	16181	16641	22461	22461					-0.08024028178715525
VEQSFFNDW	9	Unmodified						0	0	0		nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-4|FADS2	nc|ENSG00000134824|O95864-4|FADS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1171.50547	1170.49819	1.8218	0.0021342	-0.98711	-0.0011564	0.83466	0.00097781	1171.5032263030648	29.955	0.14481	29.949	29.925	30.07	-0.0064106	87	43	1.5670487	0.024737835	1.5655292	317.52963		5.0126038	-0.015728	0.00053227	-0.00075972	NaN	20.513	143	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9788.6			28113	2900	16181	16641							-0.08024028178715525
VERIVVHCN	9	Unmodified	_VERIVVHCN_					0	0	0		nc|ENSG00000129675|Q15052-2|ARHGEF6;ENSG00000129675|ENST00000250617|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.7845756301001	2	534.784576	1067.5546	1.7949	0.00095989	6.626	0.0035435	8.4209	0.0045034	534.7896670433687	22.356	0.048136	22.342	22.342	22.39	-0.013731	1263	31	0.85970795	0.018424809	0.8581885	348.79114	0	7.475128						38	3	2	NaN	NaN	NaN	0.47587	1	11185	11185		10.605	3.0646	1	2617.2			28114	2611	16182	16642	22462	22462					0.02352321176977057
VERSMMNYVEL	11	Unmodified	_VERSMMNYVEL_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.55294557573336	3	457.552946	1369.63701	1.5534	0.00071076	7.3444	0.0033604	8.8977	0.0040712	457.55517557368813	20.092	0.072136	20.078	20.054	20.126	-0.014141	1434	40	0.75435036	0.024104536	0.7528309	457.77457	0	14.627747						86	4	3	NaN	NaN	NaN	0.77168	1	18868	18868		0.56539	0	1	5151.8	+	+	28115	8278	16183	16643	22463	22463					-0.03302569597030924
VERWWVAEVF	10	Unmodified	_VERWWVAEVF_					0	0	0			REV__ENST00000456101.6_1_6:109775989-109776820:-|nuORF	REV__ENST00000456101.6_1_6:109775989-109776820:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.8404050998	2	660.840405	1319.66626	0.98036	0.00064786	4.7765	0.0031565	5.7569	0.0038044	660.8435783591904	33.864	0.16893	33.863	33.79	33.959	-0.0018463	1098	73	0.960755	0.043981552	0.9592356	388.83685	0	17.800201						200	8	2	NaN	NaN	NaN	0.5917	1	18253	18253		15.463	1.9996	1	19578	+		28116	12245	16184	16644	22464	22464					0.019210788057534955
VERWWVAEVF	10	Unmodified						0	0	0			REV__ENST00000456101.6_1_6:109775989-109776820:-|nuORF	REV__ENST00000456101.6_1_6:109775989-109776820:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	660.840405	1319.66626	0.98036	0.00064786	4.7765	0.0031565	5.7569	0.0038044	660.8435783591904	33.864	0.16893	33.863	33.79	33.959	-0.0018463	1098	73	0.960755	0.043981552	0.9592356	388.83685		17.800201	-0.0015304	0.00038989	0.00015622	NaN	15.463	200	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19578	+		28117	12245	16184	16644							0.019210788057534955
VESDGVPKP	9	Unmodified	_VESDGVPKP_					0	0	0		ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.4781879687	1	927.478188	926.470912	1.4537	0.0013483	-1.469	-0.0013624	-0.015251	-1.4145E-05	927.4767980768308	18.818	0.26427	18.804	18.731	18.996	-0.014059	363	106	1.4036897	0.062474966	1.4021703	285.30087	0	12.69809						714	12	3	NaN	NaN	NaN	0.31737	1	6391	6391		17.799	0	1	115510			28118	1447	16185	16645	22465	22465					0.0047348828089752715
VESGPHGG	8	Unmodified	_VESGPHGG_					0	0	0			REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF	REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.3369434604002	1	739.336943	738.329667	2.0514	0.0015166	-3.8349	-0.0028353	-1.7836	-0.0013187	739.3342933683302	23.923	0.1447	23.91	23.861	24.006	-0.013048	624	43	1.247731	0.025210857	1.2462115	254.54643	0	5.1432037						83	7	2	NaN	NaN	NaN	0.82332	1	3813	3813		6.0903	2.5171	1	5570.8	+		28119	12532	16186	16646	22466	22466					-0.04996465301690023
VESLVFGG	8	Unmodified	_VESLVFGG_					0	0	0		ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3	ENST00000503782.1_1_5:176734591-176737711:-|nuORF	ENST00000503782.1_1_5:176734591-176737711:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.21598615090005	2	404.215986	806.417419	0.90588	0.00036617	-1.8865	-0.00076254	-0.98059	-0.00039637	404.2152095119399	24.526	0.096422	24.526	24.502	24.598	0	1422	37	0.7617651	0.022239447	0.7617651	310.32626	0	9.0598755						89	5	2	NaN	NaN	NaN	0.81807	1	4841	4841		6.794	0.70367	1	11676			28120	5956	16187	16647	22467	22467					0.00646735569057455
VESLVFGG	8	Unmodified						0	0	0		ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3	ENST00000503782.1_1_5:176734591-176737711:-|nuORF	ENST00000503782.1_1_5:176734591-176737711:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	404.215986	806.417419	1.1857	0.00047926	-2.8175	-0.0011389	-1.6319	-0.00065962	404.21455748102767	24.55	0.096443	24.538	24.514	24.61	-0.012394	1422	40	0.7617651	0.024091423	0.7602457	310.32626		9.814331	0.0057573	-0.00046161	-0.00075972	NaN	6.794	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11626			28121	5956	16187	16647							0.00646735569057455
VESWYLKA	8	Unmodified	_VESWYLKA_					0	0	0		nc|ENSG00000188501|Q6UWM7-2|LCTL;ENSG00000188501|ENST00000695545|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	nc|ENSG00000188501|Q6UWM7-2|LCTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.5196588529001	1	995.519659	994.512382	1.1671	0.0011619	1.4125	0.0014061	2.5796	0.002568	995.5213352768678	33.745	0.072392	33.745	33.721	33.793	0	165	55	1.5210435	0.03189361	1.5210435	308.8432	0	6.475891						104	4	3	NaN	NaN	NaN	0.80071	1	8373	8373		9.1232	1.5828	1	8551.3			28122	5552	16188	16648	22468	22468					0.014906690402312961
VETEVLFSL	9	Unmodified	_VETEVLFSL_					0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5561039386998	1	1036.5561	1035.54883	1.2092	0.0012534	-1.9737	-0.0020459	-0.76453	-0.00079248	1036.5531208358389	29.593	0.21718	29.586	29.538	29.755	-0.0070667	120	127	1.5476005	0.074386954	1.5460811	314.06522	0	15.095856						545	10	4	NaN	NaN	NaN	0.032764	1	9810	9810		55.494	0	1	101600	+		28123	9750	16189	16649	22469	22469					0.03247501146279319
VETGAVGK	8	Unmodified	_VETGAVGK_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4199448083001	1	760.419945	759.412668	1.668	0.0012683	5.814	0.0044211	7.4819	0.0056894	760.4246199426063	29.474	0.24137	29.474	29.425	29.667	0	558	109	1.2873057	0.064731	1.2873057	262.48697	0	13.198914						488	11	4	NaN	NaN	NaN	0.67593	1	4211	4211		20.555	4.1388	1	125700	+		28124	13468	16190	16650	22470	22470					0.023338514262945864
VETGAVGK	8	Unmodified						0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	760.419945	759.412668	1.668	0.0012683	5.814	0.0044211	7.4819	0.0056894	760.4246199426063	29.474	0.24137	29.474	29.425	29.667	0	558	109	1.2873057	0.064731	1.2873057	262.48697		13.198914	0.0039165	0.00044206	-0.0001386	NaN	20.555	488	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125700	+		28125	13468	16190	16650							0.023338514262945864
VETVTDTTA	9	Unmodified	_VETVTDTTA_					0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4520327976998	1	936.452033	935.444756	1.6176	0.0015148	-2.1996	-0.0020598	-0.58207	-0.00054508	936.4497443632506	29.787	0.072403	29.787	29.763	29.836	0	1275	40	0.85233563	0.023963928	0.85233563	173.21344	0	4.869995						106	4	3	NaN	NaN	NaN	0.6907	1	6726	6726		0	0	1	9704.4	+		28126	10550	16191	16651	22471	22471					-0.025548256812612635
VETVTDTTA	9	Unmodified						0	0	0			REV__ENSG00000169403|ENST00000373857|PTAFR	REV__ENSG00000169403|ENST00000373857|PTAFR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.452033	935.444756	1.6176	0.0015148	-2.1996	-0.0020598	-0.58207	-0.00054508	936.4497443632506	29.787	0.072403	29.787	29.763	29.836	0	1275	40	0.85233563	0.023963928	0.85233563	173.21344		4.869995	0.0039734	0.00083763	-0.00016197	NaN	0	106	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9704.4	+		28127	10550	16191	16651							-0.025548256812612635
VEVDDENWIY	10	Unmodified	_VEVDDENWIY_					0	0	0		ENST00000534376.1_1_6:138892799-138893132:-|nuORF;nc|ENSG00000135540|Q5SYE7|NHSL1	ENST00000534376.1_1_6:138892799-138893132:-|nuORF	ENST00000534376.1_1_6:138892799-138893132:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.2853253138501	2	641.285325	1280.5561	2.4606	0.0015779	2.5674	0.0016464	5.028	0.0032244	641.2866743402343	26.746	0.02416	26.735	26.735	26.759	-0.010645	1128	40	0.9424274	0.023837447	0.94090796	381.53998	0	9.650574						34	2	2	NaN	NaN	NaN	0.77144	1	17610	17610		2.5994	0.67481	1	2963			28128	7463	16192	16652	22472	22472					-0.07295811043945832
VEVPAPAA	8	Unmodified	_VEVPAPAA_					0	0	0		ENSG00000170430|ENST00000651593|MGMT;ENST00000462672.1_1_10:131506162-131515894:+|nuORF	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.4141311489	1	753.414131	752.406855	1.3044	0.00098274	5.3083	0.0039993	6.6127	0.0049821	753.4181691474615	34.275	0.16867	34.274	34.225	34.394	-0.0012474	528	55	1.3052634	0.03231013	1.303744	266.1926	0	6.589264						196	8	3	NaN	NaN	NaN	0.82797	1	4030	4030		5.4659	1.8926	1	22804			28129	4726	16193	16653	22473	22473					0.020747529146092347
VEVPAPAA	8	Unmodified						0	0	0		ENSG00000170430|ENST00000651593|MGMT;ENST00000462672.1_1_10:131506162-131515894:+|nuORF	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	753.414131	752.406855	1.3073	0.00098491	6.958	0.0052423	8.2653	0.0062272	753.4196934697761	34.276	0.16875	34.276	34.228	34.396	0	531	64	1.3034686	0.03770125	1.3034686	265.82654		7.6887207	0.001175	0.00055152	-0.00013774	NaN	5.4659	197	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23600			28130	4726	16193	16653							0.020747529146092347
VEVPPNTMIP	10	Unmodified	_VEVPPNTMIP_					0	0	0			REV__ENST00000513565.6_1_5:122694091-122724023:-|nuORF	REV__ENST00000513565.6_1_5:122694091-122724023:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7889923060001	2	548.788992	1095.56343	1.5005	0.00082345	-6.6745	-0.0036629	-5.174	-0.0028394	548.78687629158	25.033	0.16884	25.021	24.996	25.165	-0.012011	1257	82	0.86339295	0.049706757	0.8618735	350.17212	0	20.159882						254	8	3	NaN	NaN	NaN	0.62092	1	12325	12325		13.463	1.4144	1	30331	+		28131	10529	16194	16654	22474	22474					0.019472500227720957
VEWLQFCL	8	Unmodified	_VEWLQFCL_					0	0	0		ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2598707258	2	519.259871	1036.50519	2.1337	0.001108	1.283	0.00066622	3.4167	0.0017742	519.2602720325586	18.772	0.12	18.772	18.724	18.844	0	1251	79	0.8670771	0.047925293	0.8670771	351.91507	0	19.451141						220	6	3	NaN	NaN	NaN	0.84455	1	10061	10061		2.7852	0	1	21010			28132	33	16195	16655	22475	22475					-0.011603868318388777
VEWLQFCL	8	Unmodified						0	0	0		ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	ANKRD53|p.R124Q|1|0.26|ENSG00000144031|chr2:70979297-70979297|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	519.259871	1036.50519	1.6215	0.00084199	1.828	0.0009492	3.4495	0.0017912	519.2607047395176	18.794	0.1441	18.78	18.731	18.876	-0.014061	1254	73	0.8652351	0.044233978	0.86371565	351.16748		17.952972	0.0036606	0.0002687	-0.0016807	NaN	2.7852	207	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22970			28133	33	16195	16655							-0.011603868318388777
VEYRLPFT	8	Unmodified	_VEYRLPFT_					0	0	0		ENST00000520639.1_1_5:153873211-153873349:+|nuORF;nc|ENSG00000155975|Q8NEZ2-3|VPS37A;ENSG00000155975|ENST00000324849|VPS37A	ENST00000520639.1_1_5:153873211-153873349:+|nuORF	ENST00000520639.1_1_5:153873211-153873349:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5462079544	1	1024.54621	1023.53893	1.7011	0.0017429	5.6687	0.0058078	7.3698	0.0075507	1024.5499707724248	30.269	0.048269	30.263	30.238	30.287	-0.0064106	123	67	1.5458313	0.038943887	1.5443119	313.75455	0	7.904358						61	3	2	NaN	NaN	NaN	0.14443	1	9331	9331		55.494	13.176	1	4309.1			28134	3899	16196	16656	22476	22476					0.028103579315711613
VEYTAHFGQA	10	Unmodified	_VEYTAHFGQA_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.8453342333667	3	374.845334	1121.51417	2.242	0.00084041	-1.7655	-0.00066178	0.47653	0.00017863	375.1781150608178	18.101	0.047989	18.101	18.077	18.125	0	1548	37	0.6837494	0.022341132	0.6837494	415.84518	0	13.587494						42	3	2	NaN	NaN	NaN	0.74854	1	13734	13734		2.239	0	1	2979.1	+		28135	9335	16197	16657	22477	22477					-0.04172321941791779
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.2581853166	2	501.258185	1000.50182	0.92127	0.00046179	-1.3177	-0.0006605	-0.39641	-0.00019871	501.25803743221195	31.549	0.096563	31.549	31.501	31.597	0	1347	58	0.8080346	0.035100102	0.8080346	328.10654	0	14.252563						83	5	2	NaN	NaN	NaN	0.23112	1	8607	8607		23.334	12.164	1	5480			28136	2417	16198	16658	22478	22478					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2581853166	2	501.258185	1000.50182	0.89942	0.00045084	-0.35585	-0.00017837	0.54357	0.00027247	501.2588479412206	31.524	0.096556	31.519	31.495	31.592	-0.0044174	1344	43	0.8098828	0.025867462	0.8083634	328.857	0	10.503601						69	5	2	NaN	NaN	NaN	0.17818	1	8440	8440		26.732	12.995	1	5186.7			28137	2417	16198	16658	22479	22479					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1;F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.5090941666001	1	1001.50909	1000.50182	1.0425	0.001044	3.45	0.0034552	4.4924	0.0044992	1001.5128400969003	31.524	0.24134	31.519	31.447	31.688	-0.0044174	210	136	1.4944444	0.07984841	1.4929249	303.41748	0	16.21164						522	11	3	NaN	NaN	NaN	0.055351	1	8442	8442		44.638	18.524	1	93275			28138	2417	16198	16658	22480	22480					0.0015868638580514016
VFAHGAAT	8	Unmodified	_VFAHGAAT_					0	0	0		ENSG00000110944|ENST00000228534|IL23A	ENSG00000110944|ENST00000228534|IL23A	ENSG00000110944|ENST00000228534|IL23A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.3940644088001	1	773.394064	772.386788	1.8732	0.0014487	-4.9453	-0.0038247	-3.0721	-0.002376	773.3905720547878	29.836	0.19307	29.836	29.787	29.98	0	534	70	1.3016734	0.041300654	1.3016734	265.33755	0	8.418884						215	9	2	NaN	NaN	NaN	0.81214	1	4390	4390		7.5902	1.4999	1	35159			28139	1787	16199	16659	22481	22481					-0.008509980253393223
VFAKILIQF	9	Unmodified	_VFAKILIQF_					0	0	0		ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF	ENSG00000121073|ENST00000240333|SLC35B1	ENSG00000121073|ENST00000240333|SLC35B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8366028131001	2	539.836603	1077.65865	1.4383	0.00077643	-1.3856	-0.000748	0.052667	2.8432E-05	539.8362072380249	29.305	0.072382	29.305	29.28	29.353	0	1212	64	0.8910048	0.038627446	0.8910048	361.4454	0	15.669586						159	4	3	NaN	NaN	NaN	0.070055	1	11887	11887		40.154	16.819	1	21753			28140	2288	16200	16660	22482	22482					0.12292971276133358
VFAKILIQF	9	Unmodified	_VFAKILIQF_					0	0	0		ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF	ENSG00000121073|ENST00000240333|SLC35B1	ENSG00000121073|ENST00000240333|SLC35B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8366028131001	2	539.836603	1077.65865	1.0075	0.00054389	-0.44816	-0.00024193	0.55935	0.00030196	539.8366561791795	29.352	0.072384	29.344	29.296	29.368	-0.0077209	1215	70	0.8891654	0.042301655	0.88764596	360.69922	0	17.160095						156	4	3	NaN	NaN	NaN	0.49672	1	11585	11585		9.746	6.5344	1	17942			28141	2288	16200	16660	22483	22483					0.12292971276133358
VFAQIFPQW	9	Unmodified	_VFAQIFPQW_					0	0	0		nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6|PARP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.3003844823	2	568.300384	1134.58622	0.96252	0.000547	-4.6597	-0.0026481	-3.6972	-0.0021011	568.2973684574987	33.793	0.14475	33.793	33.745	33.89	0	1233	40	0.87812483	0.023930311	0.87812483	355.99484	0	9.701416						125	7	4	NaN	NaN	NaN	0.23112	1	14271	14271		23.334	12.729	1	9637.5			28142	7946	16201	16661	22484	22484					0.02430637202564867
VFASILAAF	9	Unmodified	_VFASILAAF_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	938.5345806356002	1	938.534581	937.527304	0.95795	0.00089907	-0.21991	-0.00020639	0.73804	0.00069267	938.534113874809	35.554	0.1688	35.554	35.506	35.675	0	246	88	1.4731345	0.051550746	1.4731345	299.36386	0	10.475922						373	8	4	NaN	NaN	NaN	0.013314	1	6772	6772		82.858	26.911	1	74530			28143	304	16202	16662	22485	22485					0.05604160908239919
VFASILAAF	9	Unmodified	_VFASILAAF_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	938.5345806356002	1	938.534581	937.527304	1.2252	0.0011499	-0.22846	-0.00021442	0.99676	0.0009355	938.5340318507665	35.529	0.19298	35.529	35.505	35.698	0.00053024	243	76	1.4749115	0.044426084	1.473392	299.72495	0	9.028076						368	9	3	NaN	NaN	NaN	0.024986	1	6635	6635		65.672	7.0729	1	76401			28144	304	16202	16662	22486	22486					0.05604160908239919
VFCISGFL	8	Unmodified	_VFCISGFL_					0	0	0		ENST00000483063.1_1_2:75196760-75196847:+|nuORF	ENST00000483063.1_1_2:75196760-75196847:+|nuORF	ENST00000483063.1_1_2:75196760-75196847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.2305819701	2	443.230582	884.446611	1.3882	0.00061531	-9.2396	-0.0040953	-7.8514	-0.00348	443.22655456776596	18.794	0.12006	18.78	18.756	18.876	-0.014061	1338	61	0.81357855	0.036961496	0.8120591	330.94504	0	15.035095						181	6	2	NaN	NaN	NaN	0.69631	1	5739	5739		19.285	0	1	20946			28145	7217	16203	16663	22487	22487					-0.00023443406314527238
VFCISGFL	8	Unmodified						0	0	0		ENST00000483063.1_1_2:75196760-75196847:+|nuORF	ENST00000483063.1_1_2:75196760-75196847:+|nuORF	ENST00000483063.1_1_2:75196760-75196847:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	443.230582	884.446611	1.5746	0.00069792	-7.7296	-0.003426	-6.155	-0.0027281	443.2270481396541	18.772	0.14401	18.772	18.748	18.892	0	1338	64	0.81357855	0.03880751	0.81357855	330.94504		15.78598	-0.0036606	0.00060549	0.00075972	NaN	19.285	172	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20126			28146	7217	16203	16663							-0.00023443406314527238
VFCQGHSLFL	10	Unmodified	_VFCQGHSLFL_					0	0	0		ENST00000413366.7_1_17:64803756-64804182:+|nuORF	ENST00000413366.7_1_17:64803756-64804182:+|nuORF	ENST00000413366.7_1_17:64803756-64804182:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7893266570001	2	575.789327	1149.5641	1.1477	0.00066081	7.4054	0.004264	8.5531	0.0049248	575.7945294113965	31.525	0.38616	31.525	31.308	31.694	0	1206	100	0.894683	0.060634673	0.894683	362.6508	0	24.577667						787	17	4	NaN	NaN	NaN	0.41164	1	14788	14788		23.118	0.99124	1	135910			28147	6873	16204	16664	22488	22488					-0.0046991053750389256
VFCSIPSRS	9	Unmodified	_VFCSIPSRS_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.2525770099501	2	498.252577	994.490601	1.7359	0.00086491	-0.64126	-0.00031951	1.0946	0.0005454	498.2526379822538	26.07	0.14483	26.059	26.011	26.156	-0.011137	1314	70	0.8283535	0.042448223	0.8268341	336.3847	0	17.237732						237	7	3	NaN	NaN	NaN	0.41766	1	8205	8205		13.003	0.95414	1	25572			28148	2956	16205	16665	22489	22489					-0.006864589799647547
VFDALIYI	8	Unmodified	_VFDALIYI_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	953.5342462846	1	953.534246	952.52697	1.4039	0.0013387	-0.56847	-0.00054206	0.83546	0.00079664	953.5340306030052	35.215	0.072441	35.215	35.167	35.239	-4.5776E-05	222	52	1.4873441	0.030180931	1.4858247	302.18256	0	6.131836						81	4	2	NaN	NaN	NaN	0.54545	1	7014	7014		28.667	6.5402	1	5702.1			28149	2879	16206	16666	22490	22490					0.04880741188378579
VFDALIYI	8	Unmodified						0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	953.534246	952.52697	0.65329	0.00062293	-1.1321	-0.0010795	-0.47886	-0.00045661	953.5322449485643	35.217	0.072372	35.217	35.168	35.241	0	222	46	1.4873441	0.026630163	1.4873441	302.18256		5.410431	0.00071841	-0.00032323	0.00075972	NaN	28.667	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5413.2			28150	2879	16206	16666							0.04880741188378579
VFDALVFI	8	Unmodified	_VFDALVFI_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5236815983002	1	923.523682	922.516405	1.3691	0.0012644	-0.48682	-0.00044959	0.8823	0.00081483	923.5240054556234	37.121	0.072388	37.121	37.097	37.169	0	270	46	1.458913	0.026675463	1.458913	296.54364	0	5.4221497						75	4	2	NaN	NaN	NaN	0.40747	1	6450	6450		36.036	13.91	1	5187			28151	3714;3598	16207	16667	22491	22491					0.052047585339551006
VFDASSIQY	9	Unmodified	_VFDASSIQY_					0	0	0		ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44;ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44	ENST00000485662.1_1_1:79125005-79128426:+|nuORF	ENST00000485662.1_1_1:79125005-79128426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.488752655	1	1029.48875	1028.48148	1.5758	0.0016222	-2.6806	-0.0027596	-1.1048	-0.0011374	1029.488786259835	24.092	0.1689	24.092	24.019	24.188	0	192	73	1.5050892	0.042578936	1.5050892	305.4657	0	8.641632						187	8	3	NaN	NaN	NaN	0.01966	1	9705	9705		72.428	39.976	1	14254			28152	3124	16208	16668	22492	22492					-0.03162529064638875
VFDASSIQY	9	Unmodified	_VFDASSIQY_					0	0	0		ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44;ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44	ENST00000485662.1_1_1:79125005-79128426:+|nuORF	ENST00000485662.1_1_1:79125005-79128426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.488752655	1	1029.48875	1028.48148	1.4584	0.0015014	0.30004	0.00030889	1.7584	0.0018103	1029.48945926746	24.116	0.12061	24.103	24.079	24.199	-0.012749	189	64	1.5068626	0.037250638	1.5053432	305.82562	0	7.560211						127	6	2	NaN	NaN	NaN	0.060816	1	9510	9510		42.318	18.983	1	12975			28153	3124	16208	16668	22493	22493					-0.03162529064638875
VFDDTLGSF	9	Unmodified	_VFDDTLGSF_					0	0	0		ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4622035535002	1	1000.4622	999.454927	1.944	0.0019449	-0.55925	-0.0005595	1.3847	0.0013854	1000.4617850416809	28.339	0.1689	28.339	28.315	28.484	0	198	88	1.5015416	0.05146873	1.5015416	304.8628	0	10.44986						152	8	2	NaN	NaN	NaN	0.14301	1	8559	8559		29.598	1.8095	1	19955			28154	45	16209	16669	22494	22494					-0.0448221795597874
VFDDTLGSF	9	Unmodified	_VFDDTLGSF_					0	0	0		ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4622035535002	1	1000.4622	999.454927	1.3198	0.0013204	-0.77758	-0.00077794	0.54217	0.00054242	1000.4613891293055	28.363	0.12066	28.354	28.33	28.45	-0.0089779	192	55	1.5050892	0.031930804	1.5035697	305.58304	0	6.483032						149	6	2	NaN	NaN	NaN	0.16171	1	8372	8372		27.789	8.6705	1	19181			28155	45	16209	16669	22495	22495					-0.0448221795597874
VFDEAIRAV	9	Unmodified	_VFDEAIRAV_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.27964904019996	2	510.279649	1018.54475	2.0735	0.001058	-4.9804	-0.0025414	-2.9069	-0.0014833	510.27708157753574	21.898	0.16871	21.898	21.874	22.043	0	1293	70	0.84127116	0.042439044	0.84127116	341.52032	0	17.228424						186	8	2	NaN	NaN	NaN	0.12866	1	9323	9323		31.675	8.341	1	52761			28156	3003	16210	16670	22496	22496					0.03621456443227089
VFDEAIRAV	9	Unmodified	_VFDEAIRAV_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.27964904019996	2	510.279649	1018.54475	1.1251	0.00057412	-3.2562	-0.0016616	-2.1311	-0.0010874	510.27785778445275	21.898	0.096384	21.884	21.86	21.956	-0.013895	1293	70	0.84127116	0.042434454	0.8397517	341.52032	0	17.226593						138	5	2	NaN	NaN	NaN	0.022082	1	9132	9132		69.363	29.904	1	47268			28157	3003	16210	16670	22497	22497					0.03621456443227089
VFDEAIRAVL	10	Unmodified	_VFDEAIRAVL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.8216810304	2	566.821681	1131.62881	1.8502	0.0010488	-1.7385	-0.00098542	0.11174	6.3334E-05	566.8209486395617	27.229	0.14475	27.229	27.205	27.35	0	1212	82	0.8910048	0.049631655	0.8910048	361.22775	0	20.12149						334	7	4	NaN	NaN	NaN	0.0002722	1	14156	14156		98.792	59.874	1	155270			28158	3003	16211	16671	22498	22498					0.06825987540128153
VFDEAIRAVL	10	Unmodified	_VFDEAIRAVL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;DDRGK1-RAC1|1|fusion	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.8216810304	2	566.821681	1131.62881	1.2416	0.00070376	-1.7989	-0.0010197	-0.55731	-0.0003159	566.8206917850732	27.253	0.1448	27.242	27.194	27.339	-0.010126	1209	115	0.892844	0.06988591	0.8913246	361.9734	0	28.332886						362	7	4	NaN	NaN	NaN	0.0094358	1	13710	13710		71.985	24.945	1	153590			28159	3003	16211	16671	22499	22499					0.06825987540128153
VFDEAVRV	8	Unmodified	_VFDEAVRV_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1;ENST00000475867.5_1_10:5963439-5965826:+|nuORF	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.7532671142	2	467.753267	933.491981	1.0619	0.00049671	-3.2544	-0.0015223	-2.1925	-0.0010256	467.75199360978655	20.092	0.048088	20.078	20.078	20.126	-0.014141	1362	31	0.79879075	0.018490791	0.7972713	324.66867	0	7.5155945						46	3	2	NaN	NaN	NaN	0.77891	1	6545	6545		12.049	0	1	4293.5			28160	2876	16212	16672	22500	22500					0.022574983804247495
VFDEPGGPQ	9	Unmodified	_VFDEPGGPQ_					0	0	0			REV__ENST00000491235.1_1_X:153055507-153059775:-|nuORF	REV__ENST00000491235.1_1_X:153055507-153059775:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.21925712135004	2	473.219257	944.423961	0.15119	7.1548E-05	4.4077	0.0020858	4.5589	0.0021574	473.22177046075836	33.937	0.14482	33.936	33.911	34.056	-0.0012474	1314	34	0.8283535	0.020305753	0.8268341	336.62787	0	8.251862						95	7	2	NaN	NaN	NaN	0.55027	1	6786	6786		7.5404	1.45	1	8631.4	+		28161	12464	16213	16673	22501	22501					-0.05047371270222811
VFDEPGGPQ	9	Unmodified						0	0	0			REV__ENST00000491235.1_1_X:153055507-153059775:-|nuORF	REV__ENST00000491235.1_1_X:153055507-153059775:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.219257	944.423961	0.15119	7.1548E-05	4.4077	0.0020858	4.5589	0.0021574	473.22177046075836	33.937	0.14482	33.936	33.911	34.056	-0.0012474	1314	34	0.8283535	0.020305753	0.8268341	336.62787		8.251862	-0.0012441	0.00057589	0.00016337	NaN	7.5404	95	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8631.4	+		28162	12464	16213	16673							-0.05047371270222811
VFDFTTIDL	9	Unmodified	_VFDFTTIDL_					0	0	0		ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENST00000464326.1_1_9:19108613-19116611:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5404538745	1	1070.54045	1069.53318	1.1916	0.0012756	0.8324	0.00089112	2.024	0.0021667	1070.5418385740209	34.059	0.072422	34.059	34.01	34.083	0	69	70	1.5776473	0.040634394	1.5776473	320.02905	0	8.242767						102	4	2	NaN	NaN	NaN	0.089764	1	11541	11541		37.302	12.341	1	14157			28163	7099	16214	16674	22502	22502					0.001192146292396501
VFDGAVII	8	Unmodified	_VFDGAVII_					0	0	0		ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENSG00000169758|ENST00000388942|TMEM266	ENSG00000169758|ENST00000388942|TMEM266	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.4767314057002	1	833.476731	832.469455	1.2466	0.001039	-0.70731	-0.00058953	0.53929	0.00044949	833.4757561263865	32.973	0.16895	32.973	32.925	33.094	0	402	55	1.3804773	0.032162428	1.3804773	281.04645	0	6.5478516						169	8	3	NaN	NaN	NaN	0.54545	1	5170	5170		28.667	4.8161	1	19188			28164	4690	16215	16675	22503	22503					0.046518989828200574
VFDGAVII	8	Unmodified	_VFDGAVII_					0	0	0		ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENSG00000169758|ENST00000388942|TMEM266	ENSG00000169758|ENST00000388942|TMEM266	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.4767314057002	1	833.476731	832.469455	0.90318	0.00075278	0.56281	0.00046909	1.466	0.0012219	833.4768972668996	32.972	0.12053	32.969	32.945	33.066	-0.0024757	399	49	1.382264	0.028585792	1.3807446	281.4102	0	5.819702						158	6	3	NaN	NaN	NaN	0.54545	1	5055	5055		28.667	1.935	1	17077			28165	4690	16215	16675	22504	22504					0.046518989828200574
VFDIHVIDF	9	Unmodified	_VFDIHVIDF_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.78984958575	2	552.78985	1103.56515	1.4042	0.00077625	-0.59843	-0.00033081	0.80581	0.00044544	552.7896473812773	30.584	0.24134	30.584	30.535	30.777	0	1248	70	0.8689189	0.04234737	0.8689189	352.38156	0	17.173553						552	11	5	NaN	NaN	NaN	0.0018626	1	12998	12998		111.43	78.98	1	399770			28166	2332	16216	16676	22505	22505					0.017506271030242715
VFDIHVIDF	9	Unmodified	_VFDIHVIDF_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.78984958575	2	552.78985	1103.56515	1.533	0.00084741	-0.43063	-0.00023805	1.1023	0.00060936	552.789625634581	30.583	0.24123	30.577	30.529	30.77	-0.0057545	1242	64	0.87260187	0.038660824	0.8710824	353.87515	0	15.678528						475	11	4	NaN	NaN	NaN	8.7755E-05	1	12650	12650		123.66	79.355	1	390580			28167	2332	16216	16676	22506	22506					0.017506271030242715
VFDIVIHRF	9	Unmodified	_VFDIVIHRF_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.55371454473334	3	382.553715	1144.63931	1.1522	0.00044079	-3.4573	-0.0013226	-2.3051	-0.00088183	382.55210674168234	24.309	0.072407	24.309	24.285	24.357	0	1434	31	0.75435036	0.018540919	0.75435036	458.6712	0	11.273529						61	4	2	NaN	NaN	NaN	0.5168	1	14618	14618		8.9191	1.7887	1	6669.1			28168	1864	16217	16677	22507	22507					0.07278014985217851
VFDKTLAEL	9	Unmodified	_VFDKTLAEL_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2896824102501	2	518.289682	1034.56481	2.1195	0.0010985	-2.873	-0.001489	-0.75346	-0.00039051	518.2888159539691	23.634	0.28919	23.634	23.489	23.778	0	1260	100	0.8615505	0.060851336	0.8615505	349.68066	0	24.697968						486	13	5	NaN	NaN	NaN	0.012861	1	9983	9983		84.233	37.097	1	126950			28169	4803	16218	16678	22508	22508					0.04891207383184337
VFDKTLAEL	9	Unmodified	_VFDKTLAEL_					0	0	0		ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	ENST00000537653.5_1_12:14576849-14628955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2896824102501	2	518.289682	1034.56481	1.8995	0.00098447	-2.7434	-0.0014219	-0.84394	-0.00043741	518.2888012392295	23.658	0.24097	23.645	23.596	23.837	-0.013048	1260	76	0.8615505	0.046084464	0.8600311	349.68066	0	18.704498						518	11	5	NaN	NaN	NaN	0.030545	1	9774	9774		58.398	21.095	1	136740			28170	4803	16218	16678	22509	22509					0.04891207383184337
VFDLAQTL	8	Unmodified	_VFDLAQTL_					0	0	0		ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	ENSG00000134215|ENST00000370056|VAV3	ENSG00000134215|ENST00000370056|VAV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4931097514001	1	906.49311	905.485833	1.5918	0.001443	0.22	0.00019943	1.8118	0.0016424	906.4929158219572	29.353	0.096491	29.353	29.329	29.425	0	309	49	1.435777	0.028497696	1.435777	291.92163	0	5.794159						116	5	3	NaN	NaN	NaN	0.63138	1	6174	6174		23.334	1.2081	1	10274			28171	2855	16219	16679	22510	22510					0.029309801489034726
VFDLAQTL	8	Unmodified	_VFDLAQTL_					0	0	0		ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	ENSG00000134215|ENST00000370056|VAV3	ENSG00000134215|ENST00000370056|VAV3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	906.4931097514001	1	906.49311	905.485833	1.7528	0.0015889	-0.61226	-0.00055501	1.1406	0.0010339	906.4922390396786	29.352	0.096516	29.344	29.32	29.417	-0.0077209	306	52	1.4375578	0.030277252	1.4360384	292.2837	0	6.1559753						104	5	2	NaN	NaN	NaN	0.55996	1	6054	6054		27.789	8.6705	1	10904			28172	2855	16219	16679	22511	22511					0.029309801489034726
VFDLIQELF	9	Unmodified	_VFDLIQELF_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.30533247445	2	562.305332	1122.59611	1.0107	0.00056832	-2.3675	-0.0013313	-1.3568	-0.00076293	562.3040148181484	40.729	0.14392	40.729	40.681	40.825	0	1248	34	0.8689189	0.020257473	0.8689189	352.3079	0	8.213501						152	7	3	NaN	NaN	NaN	0.021751	1	13798	13798		69.782	24.617	1	14853			28173	2305	16220	16680	22512	22512					0.039717804172596516
VFDLIQELF	9	Unmodified	_VFDLIQELF_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.30533247445	2	562.305332	1122.59611	1.0006	0.00056262	-2.24	-0.0012596	-1.2394	-0.00069695	562.3041614525823	40.703	0.168	40.709	40.661	40.829	0.0067558	1245	37	0.87076044	0.022097886	0.869241	353.05457	0	8.959686						152	8	3	NaN	NaN	NaN	0.074859	1	13381	13381		39.459	6.0334	1	13911			28174	2305	16220	16680	22513	22513					0.039717804172596516
VFDLVELEVL	10	Unmodified	_VFDLVELEVL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3315472249501	2	588.331547	1174.64854	1.0699	0.00062945	-2.3852	-0.0014033	-1.3154	-0.00077387	588.3302954813614	37.675	0.072266	37.675	37.65	37.723	0	1185	34	0.90755045	0.020211518	0.90755045	367.7734	0	8.19046						52	4	2	NaN	NaN	NaN	0.37681	1	15644	15644		24.562	0	1	3597.4			28175	3041	16221	16681	22514	22514					0.06820318760242117
VFDMAGEIGF	10	Unmodified	_VFDMAGEIGF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.4972088513	1	1085.49721	1084.48993	1.3351	0.0014493	0.45566	0.00049462	1.7908	0.0019439	1085.4979275090634	31.863	0.19309	31.863	31.839	32.032	0	120	109	1.5476005	0.06371963	1.5476005	313.87885	0	12.923401						453	9	4	NaN	NaN	NaN	0.070973	1	12153	12153		49.961	26.844	1	69377			28176	3868	16222	16682	22515	22515					-0.04893298419688108
VFDMAGEIGF	10	Unmodified	_VFDMAGEIGF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.4972088513	1	1085.49721	1084.48993	0.7095	0.00077017	0.59064	0.00064114	1.3001	0.0014113	1085.4979546849145	31.862	0.19304	31.857	31.809	32.002	-0.0044155	117	100	1.5493695	0.058400393	1.54785	314.2376	0	11.844574						477	9	4	NaN	NaN	NaN	0.14619	1	11837	11837		40.154	18.027	1	68776			28177	3868	16222	16682	22516	22516					-0.04893298419688108
VFDMAGEIGF	10	Oxidation (M)	_VFDM(Oxidation (M))AGEIGF_		VFDM(1)AGEIGF		VFDM(45)AGEIGF	0	0	1		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1101.4921234734	1	1101.49212	1100.48485	1.661	0.0018296	-0.22686	-0.00024989	1.4342	0.0015797	1101.4915574769902	27.736	0.14478	27.736	27.688	27.833	0	117	85	1.5493695	0.049543977	1.5493695	314.1802	0	10.046509						260	7	2	NaN	NaN	NaN	0.10964	1	12850	12850		44.638	16.85	1	33589			28178	3868	16222	16683	22517	22517		422			-0.06137602282319676
VFDMAGEIGF	10	Oxidation (M)	_VFDM(Oxidation (M))AGEIGF_		VFDM(1)AGEIGF		VFDM(47)AGEIGF	0	0	1		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1101.4921234734	1	1101.49212	1100.48485	1.4248	0.0015694	-1.6587	-0.0018271	-0.23394	-0.00025768	1101.4904556573185	27.735	0.19309	27.726	27.677	27.87	-0.009552	117	88	1.5493695	0.05131066	1.54785	314.18024	0	10.404755						318	9	4	NaN	NaN	NaN	0.088985	1	12519	12519		47.482	22.521	1	33543			28179	3868	16222	16683	22518	22518		422			-0.06137602282319676
VFDMGAEVGF	10	Unmodified	_VFDMGAEVGF_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.4815587871	1	1071.48156	1070.47428	1.9086	0.002045	-0.96859	-0.0010378	0.94	0.0010072	1071.4809671799906	30.222	0.16892	30.222	30.173	30.342	0	102	100	1.5582114	0.058394194	1.5582114	316.08292	0	11.845276						282	8	3	NaN	NaN	NaN	0.27719	1	11568	11568		28.896	14.471	1	23650			28180	2036	16223	16684	22519	22519					-0.05813584936731786
VFDMGAEVGF	10	Unmodified	_VFDMGAEVGF_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1071.4815587871	1	1071.48156	1070.47428	0.91694	0.00098248	1.5473	0.0016579	2.4643	0.0026404	1071.4825946007036	30.197	0.14477	30.19	30.166	30.311	-0.0064106	105	106	1.5564433	0.06193328	1.5549239	315.72427	0	12.563171						180	7	2	NaN	NaN	NaN	0.47601	1	11275	11275		20.449	7.4458	1	20459			28181	2036	16223	16684	22520	22520					-0.05813584936731786
VFDNLIISL	9	Unmodified	_VFDNLIISL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5928237960002	1	1033.59282	1032.58555	0.77303	0.000799	3.6359	0.003758	4.4089	0.004557	1033.5971988274391	35.12	0.096554	35.12	35.096	35.192	0	114	94	1.5511382	0.054808736	1.5511382	314.795	0	11.123108						149	5	2	NaN	NaN	NaN	0.11656	1	9900	9900		33.425	4.5297	1	26181			28182	1651	16224	16685	22521	22521					0.07055797762882321
VFDPIGHF	8	Unmodified	_VFDPIGHF_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.23725290925	2	466.237253	930.459953	1.4961	0.00069755	-4.0927	-0.0019082	-2.5966	-0.0012106	466.2371167160311	25.226	0.072378	25.214	25.189	25.262	-0.012011	1353	28	0.8043377	0.016638994	0.80281824	326.93866	0	6.7632446						49	4	2	NaN	NaN	NaN	0.46176	1	6480	6480		33.137	15.357	1	3519.5			28183	3345	16225	16686	22522	22522					-0.008058693027237496
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.29476778815	2	550.294768	1098.57498	1.9998	0.0011005	-1.2173	-0.00066987	0.78252	0.00043062	550.2942256416942	28.388	0.36194	28.388	28.315	28.677	0	1227	91	0.88180584	0.0552029	0.88180584	357.62778	0	22.388245						895	16	5	NaN	NaN	NaN	0.0098181	1	12795	12795		92.758	56.523	1	671890			28184	1865	16226	16687	22523	22523					0.029638151084100173
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.29476778815	2	550.294768	1098.57498	1.7953	0.00098796	-1.6282	-0.00089596	0.16718	9.1998E-05	550.2939678898396	28.387	0.33781	28.378	28.33	28.667	-0.0089779	1227	106	0.88180584	0.064413846	0.8802864	357.62778	0	26.12387						880	15	5	NaN	NaN	NaN	0.012018	1	12461	12461		86.792	56.182	1	671380			28185	1865	16226	16687	22524	22524					0.029638151084100173
VFDPVPVGV	9	Unmodified	_VFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.5138451935002	1	928.513845	927.506569	2.1139	0.0019628	0.043145	4.0061E-05	2.1571	0.0020029	928.5137647462473	28.388	0.1689	28.388	28.315	28.484	0	300	145	1.4411188	0.085566044	1.4411188	292.90356	0	17.391083						299	8	2	NaN	NaN	NaN	0.04947	1	6543	6543		47.136	9.8334	1	51211			28186	2966	16227	16688	22525	22525					0.039915705285807235
VFDPVPVGV	9	Unmodified	_VFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.5138451935002	1	928.513845	927.506569	0.83435	0.00077471	0.3661	0.00033993	1.2005	0.0011146	928.5143816098127	28.411	0.12066	28.402	28.33	28.45	-0.0089798	297	145	1.4428991	0.0855844	1.4413797	293.2654	0	17.394806						253	6	2	NaN	NaN	NaN	0.062072	1	6417	6417		41.785	18.45	1	50320			28187	2966	16227	16688	22526	22526					0.039915705285807235
VFDPVQKTL	9	Unmodified	_VFDPVQKTL_					0	0	0		ENST00000531261.1_1_11:62365080-62365595:-|nuORF;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	ENST00000531261.1_1_11:62365080-62365595:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.7976746178501	2	523.797675	1045.5808	1.1781	0.00061709	-1.612	-0.00084436	-0.43389	-0.00022727	523.7969694034606	21.175	0.072277	21.175	21.151	21.224	0	1293	37	0.84127116	0.022136092	0.84127116	341.40256	0	8.983215						94	4	3	NaN	NaN	NaN	0.31471	1	10458	10458		17.97	8.2237	1	10868			28188	3679	16228	16689	22527	22527					0.05982913620096042
VFDQRIDNFDK	11	Unmodified	_VFDQRIDNFDK_					0	0	0			REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.23336930516666	3	466.233369	1395.67828	0.39405	0.00018372	2.201	0.0010262	2.595	0.0012099	466.23399302622306	22.428	0.19265	22.414	22.342	22.535	-0.013731	1404	40	0.77288127	0.02407837	0.7713618	468.93265	0	14.609161						201	9	3	NaN	NaN	NaN	0.66757	1	19087	19087		9.5854	3.2291	1	21158	+		28189	12456	16229	16690	22528	22528					-0.0037334924172682804
VFDQRIDNFDK	11	Unmodified						0	0	0			REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	466.233369	1395.67828	1.2235	0.00057044	0.56589	0.00026384	1.7894	0.00083428	466.23324035120015	22.284	0.16885	22.284	22.26	22.429	0	1407	46	0.77102906	0.027785778	0.77102906	467.8089		16.858551	-0.065136	-0.0010219	-0.00016637	NaN	9.5854	188	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26245	+		28190	12456	16229	16690							-0.0037334924172682804
VFDQRIDNFDK	11	Unmodified						0	0	0			REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	REV__ENST00000490611.1_1_2:42886927-42909744:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	466.233369	1395.67828	0.39405	0.00018372	2.201	0.0010262	2.595	0.0012099	466.23399302622306	22.428	0.19265	22.414	22.342	22.535	-0.013731	1404	40	0.77288127	0.02407837	0.7713618	468.93265		14.609161	0.065136	0.0012651	0.00016637	NaN	9.5854	201	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21158	+		28191	12456	16229	16690							-0.0037334924172682804
VFDTAIAHL	9	Unmodified	_VFDTAIAHL_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.76891717839993	2	493.768917	985.523281	1.3804	0.00068159	-2.6967	-0.0013315	-1.3163	-0.00064995	493.76799080279744	24.261	0.14475	24.261	24.237	24.381	0	1287	58	0.8449601	0.03504312	0.8449601	343.17105	0	14.232391						194	7	3	NaN	NaN	NaN	0.034898	1	8070	8070		53.324	17.287	1	29207			28192	5237	16230	16691	22529	22529					0.029940714145027414
VFDTAIAHL	9	Unmodified	_VFDTAIAHL_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.76891717839993	2	493.768917	985.523281	0.91696	0.00045276	-0.40756	-0.00020124	0.50939	0.00025152	493.76847653595314	24.285	0.16895	24.272	24.224	24.393	-0.012749	1287	55	0.8449601	0.033196986	0.84344065	343.17105	0	13.482605						220	8	4	NaN	NaN	NaN	0.042649	1	7898	7898		50.033	23.918	1	34551			28193	5237	16230	16691	22530	22530					0.029940714145027414
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3031241365	2	567.303124	1132.5917	2.0811	0.0011806	-1.7069	-0.00096832	0.37424	0.00021231	567.3018339953964	29.86	0.19305	29.86	29.811	30.004	0	1182	76	0.9093879	0.045935333	0.9093879	368.6768	0	18.622742						334	9	4	NaN	NaN	NaN	0.0076061	1	14192	14192		74.332	36.201	1	85881			28194	5237	16231	16692	22531	22531					0.030703159943413993
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3031241365	2	567.303124	1132.5917	1.0564	0.00059928	-1.2026	-0.00068227	-0.14628	-8.2984E-05	567.3020676764081	29.859	0.24126	29.852	29.755	29.996	-0.0070648	1179	73	0.9112251	0.044105053	0.90970564	369.4216	0	17.880737						344	11	5	NaN	NaN	NaN	0.071906	1	13741	13741		49.833	29.384	1	87040			28195	5237	16231	16692	22532	22532					0.030703159943413993
VFDTRQSID	9	Unmodified	_VFDTRQSID_					0	0	0			REV__ENST00000463095.2_1_10:55581620-55664971:-|nuORF	REV__ENST00000463095.2_1_10:55581620-55664971:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.7696454599001	2	540.769645	1079.52474	1.7888	0.00096732	-0.34823	-0.00018831	1.4406	0.00077901	541.2710651839748	16.782	0.1439	16.782	16.734	16.877	0	1278	61	0.85049206	0.036861658	0.85049206	345.00345	0	14.952972						165	7	2	NaN	NaN	NaN	0.29341	1	11957	11957		19.336	0.17285	1	11454	+		28196	12275	16232	16693	22533	22533					-0.011843392873743142
VFDTSIAQL	9	Unmodified	_VFDTSIAQL_					0	0	0		nc|ENSG00000196470|Q8IUQ4-2|SIAH1;ENSG00000196470|ENST00000394725|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.2662073139499	2	497.266207	992.517862	1.5384	0.00076501	-1.5287	-0.00076018	0.0096981	4.8225E-06	497.2655781774354	27.543	0.16895	27.543	27.495	27.664	0	1311	49	0.83019954	0.029533982	0.83019954	337.1435	0	11.993744						184	8	3	NaN	NaN	NaN	0.04947	1	8318	8318		47.136	14.683	1	36003			28197	5628	16233	16694	22534	22534					0.021303478320305658
VFDTSIAQL	9	Unmodified	_VFDTSIAQL_					0	0	0		nc|ENSG00000196470|Q8IUQ4-2|SIAH1;ENSG00000196470|ENST00000394725|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.2662073139499	2	497.266207	992.517862	0.77196	0.00038387	-2.2456	-0.0011167	-1.4736	-0.00073278	497.26498630397555	27.566	0.12068	27.557	27.508	27.629	-0.009552	1308	46	0.83204526	0.027683675	0.8305259	337.89307	0	11.24231						182	6	4	NaN	NaN	NaN	0.18779	1	8153	8153		26.115	10.94	1	34425			28198	5628	16233	16694	22535	22535					0.021303478320305658
VFDTSIAQLF	10	Unmodified	_VFDTSIAQLF_					0	0	0		nc|ENSG00000196470|Q8IUQ4-2|SIAH1;ENSG00000196470|ENST00000394725|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.8004142720499	2	570.800414	1139.58628	1.2172	0.00069478	-1.9681	-0.0011234	-0.75086	-0.00042859	570.7991589213221	34.083	0.21716	34.083	34.01	34.228	0	1203	55	0.8965218	0.033100247	0.8965218	363.4339	0	13.418274						216	10	4	NaN	NaN	NaN	0.070973	1	14435	14435		49.961	23.846	1	41168			28199	5628	16234	16695	22536	22536					0.022065924118805924
VFDTSIAQLF	10	Unmodified	_VFDTSIAQLF_					0	0	0		nc|ENSG00000196470|Q8IUQ4-2|SIAH1;ENSG00000196470|ENST00000394725|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-2|SIAH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.8004142720499	2	570.800414	1139.58628	0.78289	0.00044687	-0.45731	-0.00026103	0.32558	0.00018584	570.800028532776	34.082	0.26555	34.08	33.984	34.249	-0.0012474	1200	46	0.89836043	0.02757907	0.896841	364.17923	0	11.180054						270	12	4	NaN	NaN	NaN	0.070973	1	13965	13965		49.961	28.126	1	42967			28200	5628	16234	16695	22537	22537					0.022065924118805924
VFDTSQFF	8	Unmodified	_VFDTSQFF_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.4567242451001	1	990.456724	989.449448	2.1791	0.0021583	0.81233	0.00080458	2.9915	0.0029629	990.4567700531113	29.86	0.12066	29.86	29.836	29.956	0	207	79	1.496219	0.046156645	1.496219	303.8239	0	9.37262						216	6	3	NaN	NaN	NaN	0.14443	1	8180	8180		55.494	32.376	1	18564			28201	3296	16235	16696	22538	22538					-0.04569896747807434
VFDTSQFF	8	Unmodified	_VFDTSQFF_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.4567242451001	1	990.456724	989.449448	1.3413	0.0013285	1.8733	0.0018554	3.2146	0.0031839	990.4580193729008	29.859	0.12064	29.852	29.803	29.924	-0.0070648	204	82	1.4979934	0.04792428	1.496474	304.1842	0	9.731567						178	6	3	NaN	NaN	NaN	0.67593	1	8016	8016		20.555	0	1	15954			28202	3296	16235	16696	22539	22539					-0.04569896747807434
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5662746945001	1	1004.56627	1003.559	2.0931	0.0021027	-1.2645	-0.0012703	0.82856	0.00083234	1004.5663144439588	36.133	0.40997	36.133	36.061	36.471	0	132	196	1.5405227	0.115238905	1.5405227	312.75986	0	23.396027						1673	18	6	NaN	NaN	NaN	0.032826	1	8742	8742		55.413	8.2773	1	734030			28203	2332	16236	16697	22540	22540					0.057361088715197184
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5662746945001	1	1004.56627	1003.559	1.4216	0.0014281	0.34806	0.00034965	1.7697	0.0017778	1004.5665537079648	36.976	0.24058	36.976	36.88	37.121	0	135	61	1.5387528	0.035407305	1.5387528	312.4005	0	7.1884766						264	11	2	NaN	NaN	NaN	0.074859	1	8743	8743		39.459	2.1564	1	23926			28204	2332	16236	16697	22541	22541					0.057361088715197184
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5662746945001	1	1004.56627	1003.559	2.2808	0.0022912	-1.7476	-0.0017556	0.53312	0.00053556	1004.5659253727043	36.131	0.36135	36.132	36.036	36.397	0.0011024	129	202	1.5422925	0.1187973	1.540773	313.11914	0	24.118439						1667	16	6	NaN	NaN	NaN	0.048656	1	8568	8568		47.482	0.34574	1	711530			28205	2332	16236	16697	22542	22542					0.057361088715197184
VFDVALLDL	9	Unmodified	_VFDVALLDL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5662746945001	1	1004.56627	1003.559	1.5434	0.0015504	0.85396	0.00085786	2.3973	0.0024083	1004.565949294246	36.926	0.072033	36.928	36.88	36.952	0.0022469	132	46	1.5405227	0.026545644	1.5390033	312.75983	0	5.3893433						85	4	2	NaN	NaN	NaN	0.10363	1	8571	8571		35.296	2.8437	1	7484.9			28206	2332	16236	16697	22543	22543					0.057361088715197184
VFDVALLDL	9	Unmodified						0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1004.56627	1003.559	2.0357	0.002045	-0.51228	-0.00051462	1.5235	0.0015304	1004.5657307255118	36.396	0.072269	36.398	36.398	36.47	0.0016785	132	73	1.5405227	0.042497754	1.5390033	312.75986		8.627991	0.13252	0.0006562	-0.00075972	NaN	55.413	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5648			28207	2332	16236	16697							0.057361088715197184
VFDVGGLL	8	Unmodified	_VFDVGGLL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.4610813415003	1	819.461081	818.453805	1.5383	0.0012606	-0.55717	-0.00045658	0.98118	0.00080404	819.4608125223015	31.766	0.19309	31.766	31.742	31.935	0	450	88	1.3518641	0.051930666	1.3518641	275.2977	0	10.575317						289	9	3	NaN	NaN	NaN	0.09307	1	5002	5002		65.672	15.639	1	69119			28208	4104	16237	16698	22544	22544					0.037316124657763794
VFDVGGLL	8	Unmodified	_VFDVGGLL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	819.4610813415003	1	819.461081	818.453805	0.84227	0.00069021	0.20864	0.00017098	1.0509	0.00086119	819.4614086813903	31.765	0.21725	31.761	31.712	31.93	-0.0044155	450	91	1.3518641	0.053718448	1.3503447	275.2977	0	10.939392						340	10	4	NaN	NaN	NaN	0.12449	1	4892	4892		59.445	15.198	1	72772			28209	4104	16237	16698	22545	22545					0.037316124657763794
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7794818647	2	553.779482	1105.54441	0.8341	0.00046191	-3.1365	-0.0017369	-2.3024	-0.001275	553.7778491867035	33.48	0.31361	33.48	33.407	33.721	0	1245	121	0.87076044	0.073643684	0.87076044	353.1206	0	29.864807						793	14	4	NaN	NaN	NaN	0.017076	1	13081	13081		75.698	8.5442	1	191380			28210	1977	16238	16699	22546	22546					-0.004139632766509749
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5516872627998	1	1106.55169	1105.54441	1.2383	0.0013702	0.28282	0.00031296	1.5211	0.0016832	1106.5508578866165	33.48	0.21706	33.48	33.431	33.648	0	72	139	1.5758814	0.08134198	1.5758814	319.53818	0	16.49356						639	10	5	NaN	NaN	NaN	0.010878	1	13083	13083		90.252	40.29	1	114190			28211	1977	16238	16699	22547	22547					-0.004139632766509749
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.7794818647	2	553.779482	1105.54441	0.89193	0.00049393	-3.9328	-0.0021779	-3.0409	-0.001684	553.7774944451372	33.478	0.33784	33.476	33.38	33.718	-0.0018501	1245	124	0.87076044	0.0754807	0.869241	353.1206	0	30.609772						861	15	5	NaN	NaN	NaN	0.01966	1	12726	12726		72.428	24.947	1	185340			28212	1977	16238	16699	22548	22548					-0.004139632766509749
VFDWIEANL	9	Unmodified	_VFDWIEANL_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1106.5516872627998	1	1106.55169	1105.54441	0.7668	0.0008485	0.038733	4.286E-05	0.80553	0.00089136	1106.5510316285781	33.478	0.33785	33.476	33.428	33.766	-0.0018501	72	133	1.5758814	0.07778895	1.5743619	319.53818	0	15.773102						619	15	4	NaN	NaN	NaN	0.070055	1	12728	12728		40.154	14.353	1	99806			28213	1977	16238	16699	22549	22549					-0.004139632766509749
VFEAEIVLL	9	Unmodified	_VFEAEIVLL_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5975748229	1	1032.59757	1031.5903	0.69774	0.00072049	-3.5646	-0.0036808	-2.8669	-0.0029604	1032.5955696685367	35.241	0.072411	35.241	35.217	35.289	0	120	76	1.5476005	0.044205308	1.5476005	314.08105	0	8.971344						127	4	3	NaN	NaN	NaN	0.47587	1	9862	9862		10.605	0	1	11243			28214	4838	16239	16700	22550	22550					0.07576681905629812
VFEAEIVLL	9	Unmodified						0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.59757	1031.5903	0.96665	0.00099816	-5.433	-0.0056101	-4.4664	-0.004612	1032.592837124981	35.239	0.072372	35.239	35.215	35.287	-4.1962E-05	117	79	1.5493695	0.04598558	1.54785	314.4401		9.332642	-0.00072452	-0.00099927	0.00012476	NaN	10.605	119	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11105			28215	4838	16239	16700							0.07576681905629812
VFFFDSYNMK	10	Unmodified	_VFFFDSYNMK_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.2997241678	2	649.299724	1296.5849	0.77272	0.00050173	-8.973	-0.0058262	-8.2003	-0.0053244	649.794207362268	33.695	0.096527	33.694	33.67	33.766	-0.0018501	1113	61	0.9515937	0.03666711	0.95007426	385.20016	0	14.842651						117	5	2	NaN	NaN	NaN	0.69717	1	17875	17875		8.2448	3.5157	1	8441			28216	4154	16240	16701	22551	22551					-0.05153364948500894
VFFFIGVSPN	10	Unmodified	_VFFFIGVSPN_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8002173068002	2	563.800217	1125.58588	1.6014	0.00090284	3.1409	0.0017708	4.7422	0.0026737	563.8017755777724	39.982	0.096207	39.988	39.988	40.084	0.0060463	1203	34	0.8965218	0.020222485	0.89500237	363.4879	0	8.199036						52	5	2	NaN	NaN	NaN	0.74854	1	13486	13486		4.7291	0.31598	1	4187.7	+		28217	9893;11124	16241	16702	22552	22552					0.028112174827356284
VFFFIGVSPN	10	Unmodified						0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	563.800217	1125.58588	1.4148	0.00079765	0.30687	0.00017301	1.7216	0.00097066	564.3011485959903	40.272	0.048191	40.272	40.248	40.296	0	1200	37	0.89836043	0.022062063	0.89836043	364.23337		8.944885	0.14222	-0.0022263	0.001679	NaN	4.7291	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2036.9	+		28218	9893;11124	16241	16702							0.028112174827356284
VFFFIGVSPN	10	Unmodified						0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000144285|P35498-3|SCN1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.800217	1125.58588	1.6014	0.00090284	3.1409	0.0017708	4.7422	0.0026737	563.8017755777724	39.982	0.096207	39.988	39.988	40.084	0.0060463	1203	34	0.8965218	0.020222485	0.89500237	363.4879		8.199036	-0.14222	0.00096936	-0.001679	NaN	4.7291	52	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4187.7	+		28219	9893;11124	16241	16702							0.028112174827356284
VFFFMIILEK	10	Unmodified	_VFFFMIILEK_					0	0	0		nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	nc|ENSG00000022567|Q5BKX6-3|SLC45A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.8645029728002	2	643.864503	1285.71445	1.8478	0.0011898	-3.2556	-0.0020962	-1.4078	-0.00090643	643.8629025697711	42.121	0.047928	42.13	42.13	42.178	0.0089951	1221	61	0.885486	0.036813855	0.88396657	358.47205	0	14.903381						58	3	2	NaN	NaN	NaN	0.77832	1	17708	17708		0.92586	0.12598	1	4082.5			28220	7897	16242	16703	22553	22553					0.0830243640145909
VFFGLAAP	8	Unmodified	_VFFGLAAP_					0	0	0			REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4556020331	1	821.455602	820.448326	-0.32682	-0.00026847	-3.1402	-0.0025795	-3.467	-0.002848	821.4523779691008	56.803	0.19211	56.802	56.754	56.946	-0.00056458	336	88	1.419741	0.05172634	1.4182216	289.10876	0	10.533295						277	9	3	NaN	NaN	NaN	0.84651	1	4919	4919		1.6704	0	1	26755	+		28221	12667	16243	16704	22554	22554					0.030919336739430037
VFFIFGII	8	Unmodified	_VFFIFGII_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.28621447455015	2	478.286214	954.557876	0.59264	0.00028345	8.8647	0.0042399	9.4573	0.0045233	478.28998862306344	56.779	0.096146	56.778	56.754	56.85	-0.00056458	1329	22	0.81912065	0.012930214	0.8176012	332.8251	0	5.2538147						40	5	2	NaN	NaN	NaN	0.84651	1	7060	7060		1.6704	0	1	2406.8			28222	1232	16244	16705	22555	22555					0.07877939293302916
VFFKGFKW	8	Unmodified	_VFFKGFKW_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.5322508211334	3	353.532251	1057.57492	1.3671	0.00048332	-3.6174	-0.0012788	-2.2502	-0.00079553	353.53096733304454	24.478	0.096405	24.478	24.454	24.55	0	1500	25	0.71351165	0.0148665905	0.71351165	434.26392	0	9.048218						83	5	3	NaN	NaN	NaN	0.81251	1	10999	10999		5.1889	2.2994	1	5835.1			28223	2202	16245	16706	22556	22556					0.048438598990969695
VFFKGFKWGF	10	Unmodified	_VFFKGFKWGF_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.5622100344	3	421.56221	1261.6648	1.6297	0.00068703	-2.6043	-0.0010979	-0.97459	-0.00041085	421.5606919732268	27.953	0.072382	27.953	27.929	28.001	0	1401	28	0.77473325	0.016669631	0.77473325	470.5451	0	10.124542						65	4	3	NaN	NaN	NaN	0.62764	1	18035	18035		10.244	7.5395	1	4734.2			28224	2202	16246	16707	22557	22557					0.04443489507639242
VFFKGFKWGF	10	Unmodified	_VFFKGFKWGF_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.5622100344	3	421.56221	1261.6648	2.5607	0.0010795	-0.63498	-0.00026768	1.9257	0.0008118	421.56288061839246	28.314	0.024124	28.305	28.281	28.305	-0.0089779	1407	25	0.77102906	0.014818251	0.7695096	468.29532	0	9.000092						25	2	2	NaN	NaN	NaN	0.77421	1	17255	17255		1.6985	1.0668	1	1412.7			28225	2202	16246	16707	22558	22558					0.04443489507639242
VFFNQYIE	8	Unmodified	_VFFNQYIE_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.2609249708001	2	530.260925	1058.5073	1.4505	0.00076914	0.64122	0.00034001	2.0917	0.0011092	530.2611201867667	21.657	0.26489	21.643	21.499	21.764	-0.013897	1287	94	0.8449601	0.05715102	0.84344065	342.84515	0	23.189209						645	12	6	NaN	NaN	NaN	0.49126	1	10780	10780		31.561	4.2648	1	244470	+		28226	9064	16247	16708	22559	22559					-0.019616348223735258
VFFPTWCLLFA	11	Unmodified	_VFFPTWCLLFA_					0	0	0			REV__ENSG00000069696|ENST00000176183|DRD4	REV__ENSG00000069696|ENST00000176183|DRD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.34647739515	2	672.346477	1342.6784	0.8504	0.00057176	-1.1926	-0.00080182	-0.34218	-0.00023006	672.3457649977547	35.699	0.096531	35.699	35.675	35.771	0	1101	55	0.95892316	0.032964826	0.95892316	388.02655	0	13.339142						132	5	3	NaN	NaN	NaN	0.61551	1	19457	19457		13.003	1.8325	1	12388	+		28227	8563	16248	16709	22560	22560					0.020769792245801
VFFRRQEL	8	Unmodified	_VFFRRQEL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.8089080061501	2	547.808908	1093.60326	2.2089	0.00121	-3.6786	-0.0020152	-1.4697	-0.00080514	547.8073313534987	16.395	0.047953	16.382	16.358	16.406	-0.012993	1194	28	0.902037	0.016542077	0.9005176	365.85342	0	6.7092285						49	3	2	NaN	NaN	NaN	0.72043	1	12248	12248		17.78	1.1962	1	5578			28228	4973	16249	16710	22561	22561					0.06020557808369631
VFFSRDGVSPC	11	Unmodified	_VFFSRDGVSPC_					0	0	0		ENST00000424738.1_1_10:117226695-117357303:+|nuORF;ENST00000383376.9_1_18:12008408-12017827:+|nuORF	ENST00000424738.1_1_10:117226695-117357303:+|nuORF	ENST00000424738.1_1_10:117226695-117357303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2871481088002	2	607.287148	1212.55974	1.3776	0.0008366	-1.2946	-0.00078618	0.083024	5.042E-05	607.2862711441791	26.553	0.072414	26.553	26.529	26.601	0	969	118	1.0393391	0.071174204	1.0393391	421.0262	0	28.832						334	4	3	NaN	NaN	NaN	0.78138	1	16783	16783		0	0	1	32406			28229	6936	16250	16711	22562	22562					-0.03803419751034198
VFGAAGGG	8	Unmodified	_VFGAAGGG_					0	0	0			REV__ENST00000509748.1_2_4:83905849-83934032:-|nuORF	REV__ENST00000509748.1_2_4:83905849-83934032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	318.1610139609501	2	318.161014	634.307475	1.6169	0.00051443	6.8028	0.0021644	8.4197	0.0026788	318.1636061752664	45.55	0.09586	45.55	45.526	45.622	0	1494	37	0.7172283	0.022299886	0.7172283	293.50327	0	9.125549						68	5	2	NaN	NaN	NaN	0.84876	1	1578	1578		0.39566	0	1	6349.4	+		28230	12552	16251	16712	22563	22563					-0.024306449794607943
VFGAAGGG	8	Unmodified						0	0	0			REV__ENST00000509748.1_2_4:83905849-83934032:-|nuORF	REV__ENST00000509748.1_2_4:83905849-83934032:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	318.161014	634.307475	1.6169	0.00051443	6.8028	0.0021644	8.4197	0.0026788	318.1636061752664	45.55	0.09586	45.55	45.526	45.622	0	1494	37	0.7172283	0.022299886	0.7172283	293.50327		9.125549	0	0	0	NaN	0.39566	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6349.4	+		28231	12552	16251	16712							-0.024306449794607943
VFGLLVAH	8	Unmodified	_VFGLLVAH_					0	0	0			REV__ENST00000472190.5_1_1:233765551-233807273:+|nuORF	REV__ENST00000472190.5_1_1:233765551-233807273:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.5087002361	1	855.5087	854.501424	0.7394	0.00063256	8.6569	0.007406	9.3963	0.0080386	855.5162095508823	31.355	0.072361	31.35	31.326	31.398	-0.0050716	441	52	1.3572328	0.030416131	1.3557134	276.1984	0	6.1896973						107	4	3	NaN	NaN	NaN	0.83849	1	5325	5325		4.0537	2.129	1	13838	+		28232	9633	16252	16713	22564	22564					0.06835311456597992
VFGSAEII	8	Unmodified	_VFGSAEII_					0	0	0		ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5;CNTN5|p.E554K|1|0.35|ENSG00000149972|chr11:100191205-100191205|G/A|missense_variant	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	835.4559959636	1	835.455996	834.448719	0.8706	0.00072734	0.20654	0.00017255	1.0771	0.0008999	835.4555984450562	30.414	0.14482	30.407	30.383	30.528	-0.0064106	432	46	1.3625998	0.026829243	1.3610804	277.39612	0	5.461853						131	7	2	NaN	NaN	NaN	0.72043	1	5069	5069		17.78	1.3637	1	13270			28233	3703	16253	16714	22565	22565					0.024873086031334424
VFGYHGYTF	9	Unmodified	_VFGYHGYTF_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.7532671142001	2	545.753267	1089.49198	1.4338	0.0007825	1.9687	0.0010744	3.4025	0.0018569	546.256284733959	23.875	0.12057	23.875	23.851	23.971	0	1233	73	0.87812483	0.04420048	0.87812483	356.17166	0	17.927948						221	6	3	NaN	NaN	NaN	0.20577	1	12360	12360		24.961	8.5444	1	24558			28234	3365	16254	16715	22566	22566					-0.049185016195679054
VFGYHGYTF	9	Unmodified						0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	545.753267	1089.49198	1.5352	0.00083784	2.5105	0.0013701	4.0458	0.002208	546.2568566695796	23.899	0.1447	23.886	23.861	24.006	-0.01305	1233	70	0.87812483	0.04235196	0.8766054	356.17166		17.178131	0.0054315	0.00031583	-0.00075972	NaN	24.961	247	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23278			28235	3365	16254	16715							-0.049185016195679054
VFHCQSAVMS	10	Unmodified	_VFHCQSAVMS_					0	0	0		ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	ENST00000435916.1_1_10:52025510-52026503:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.4914119669	1	1108.49141	1107.48414	1.5349	0.0017014	7.0929	0.0078625	8.6279	0.0095639	1109.5021807691487	34.3	0.1447	34.3	34.228	34.372	0	96	67	1.5617468	0.038894534	1.5617468	316.66528	0	7.886383						180	7	2	NaN	NaN	NaN	0.70677	1	13157	13157		7.5876	0.047225	1	15122			28236	868	16255	16716	22567	22567					-0.06530720203022611
VFHGSQGA	8	Unmodified	_VFHGSQGA_					0	0	0			REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF	REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.3842280040001	1	802.384228	801.376952	1.69	0.001356	-8.8484	-0.0070998	-7.1584	-0.0057438	802.3770594978332	29.184	0.096554	29.184	29.16	29.256	0	492	64	1.3267875	0.037644982	1.3267875	270.28607	0	7.6688232						126	5	2	NaN	NaN	NaN	0.79379	1	4761	4761		10.052	0	1	10366	+		28237	11936	16256	16717	22568	22568					-0.03168186030711695
VFHGSQGA	8	Unmodified						0	0	0			REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF	REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	802.384228	801.376952	1.69	0.001356	-8.8484	-0.0070998	-7.1584	-0.0057438	802.3770594978332	29.184	0.096554	29.184	29.16	29.256	0	492	64	1.3267875	0.037644982	1.3267875	270.28607		7.6688232	0.0042565	0.00059794	0.00075972	NaN	10.052	126	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10366	+		28238	11936	16256	16717							-0.03168186030711695
VFHPSQDLVF	10	Unmodified	_VFHPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8060309662	2	594.806031	1187.59751	1.2111	0.00072034	-1.4094	-0.00083834	-0.19837	-0.00011799	594.80495460729	24.695	0.14478	24.695	24.671	24.816	0	1200	91	0.89836043	0.055119455	0.89836043	364.00317	0	22.333649						313	7	4	NaN	NaN	NaN	0.31689	1	16083	16083		27.046	9.2475	1	58563			28239	1753	16257	16718	22569	22569					0.011214145060193914
VFHPSQDLVF	10	Unmodified	_VFHPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8060309662	2	594.806031	1187.59751	0.89133	0.00053017	-1.6823	-0.0010006	-0.79094	-0.00047045	594.8051242037988	24.719	0.19292	24.707	24.586	24.779	-0.012392	1200	94	0.89836043	0.05695367	0.896841	364.00317	0	23.076874						343	9	4	NaN	NaN	NaN	0.62092	1	15474	15474		13.463	3.1029	1	53772			28240	1753	16257	16718	22570	22570					0.011214145060193914
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.30058144755	2	539.300581	1076.58661	1.9988	0.001078	-1.8067	-0.00097438	0.19208	0.00010359	539.2994945647546	19.42	0.19198	19.42	19.372	19.564	0	1254	49	0.8652351	0.029470205	0.8652351	350.9961	0	11.955017						275	9	4	NaN	NaN	NaN	0.0073225	1	11838	11838		97.85	18.651	1	112770			28241	3662	16258	16719	22571	22571					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.30058144755	2	539.300581	1076.58661	1.5606	0.00084161	-1.4985	-0.00080816	0.062034	3.3455E-05	539.300005590283	19.442	0.16841	19.428	19.38	19.549	-0.014141	1254	55	0.8652351	0.033157587	0.86371565	350.99606	0	13.450867						257	8	4	NaN	NaN	NaN	0.020011	1	11527	11527		71.985	16.393	1	114130			28242	3662	16258	16719	22572	22572					0.05138012131760661
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.618310265	1	1030.61831	1029.61103	1.397	0.0014398	-2.1212	-0.0021862	-0.72426	-0.00074644	1030.618155100222	36.952	0.12029	36.952	36.904	37.024	0	84	88	1.5688156	0.051261783	1.5688156	318.39468	0	10.403717						240	6	3	NaN	NaN	NaN	0.055351	1	9776	9776		44.638	0.33612	1	24426			28243	2940	16259	16720	22573	22573					0.09741272285282321
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.8127933658001	2	515.812793	1029.61103	1.5548	0.00080196	-1.9958	-0.0010295	-0.44108	-0.00022751	515.8116447153271	36.952	0.072208	36.952	36.928	37	0	1269	37	0.8560222	0.022119343	0.8560222	347.4588	0	8.978241						75	4	2	NaN	NaN	NaN	0.062072	1	9777	9777		41.785	9.3317	1	6911.1			28244	2940	16259	16720	22574	22574					0.09741272285282321
VFIELPLSI	9	Unmodified	_VFIELPLSI_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.618310265	1	1030.61831	1029.61103	1.0953	0.0011288	0.32171	0.00033156	1.417	0.0014604	1030.6193475500108	36.95	0.072086	36.952	36.928	37	0.0022507	78	79	1.5723488	0.045946717	1.5708294	319.11176	0	9.324982						190	4	2	NaN	NaN	NaN	0.013281	1	9577	9577		82.96	30.336	1	22363			28245	2940	16259	16720	22575	22575					0.09741272285282321
VFIFKVVVWL	10	Unmodified	_VFIFKVVVWL_					0	0	0		ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENST00000562813.1_1_16:56531612-56532525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1249.7707285821	1	1249.77073	1248.76345	1.1321	0.0014148	3.8835	0.0048535	5.0156	0.0062684	1249.7761107863846	41.328	0.096283	41.336	41.24	41.336	0.0082626	633	127	1.2423272	0.075648665	1.2408078	251.54745	0	15.317398						277	5	2	NaN	NaN	NaN	0.78133	1	17006	17006		0.19249	0	1	30762			28246	7606	16260	16721	22576	22576					0.14902092752686258
VFIIVPAIF	9	Unmodified	_VFIIVPAIF_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.6335663987002	1	1018.63357	1017.62629	1.8489	0.0018834	-0.81788	-0.00083312	1.031	0.0010503	1018.632466334537	40.512	0.21634	40.512	40.44	40.657	0	135	67	1.5387528	0.038939834	1.5387528	312.34198	0	7.9041443						397	10	4	NaN	NaN	NaN	0.015198	1	9295	9295		78.076	33.444	1	71321			28247	3998	16261	16722	22577	22577					0.11818183873140242
VFIIVPAIF	9	Unmodified	_VFIIVPAIF_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.6335663987002	1	1018.63357	1017.62629	1.5316	0.0015601	0.25315	0.00025787	1.7847	0.001818	1018.6332283382229	40.486	0.21626	40.493	40.421	40.637	0.0067596	135	85	1.5387528	0.049575567	1.5372335	312.34198	0	10.063019						379	10	3	NaN	NaN	NaN	0.033463	1	9111	9111		54.579	18.834	1	71415			28248	3998	16261	16722	22578	22578					0.11818183873140242
VFIKYLPEW	9	Unmodified	_VFIKYLPEW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8315174352	2	597.831517	1193.64848	1.3826	0.00082658	-1.8293	-0.0010936	-0.44671	-0.00026706	597.8299310409479	28.822	0.24129	28.822	28.75	28.991	0	1152	61	0.92775106	0.03671062	0.92775106	375.88998	0	14.873749						360	11	4	NaN	NaN	NaN	0.030696	1	16270	16270		58.2	23.746	1	97491			28249	908	16262	16723	22579	22579					0.059403635508715524
VFIKYLPEW	9	Unmodified	_VFIKYLPEW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.8315174352	2	597.831517	1193.64848	0.91937	0.00054963	-1.7779	-0.0010629	-0.85854	-0.00051327	597.8304054927079	28.845	0.26547	28.837	28.765	29.03	-0.0083504	1152	55	0.92775106	0.03303951	0.9262317	375.88998	0	13.386383						436	12	4	NaN	NaN	NaN	0.028569	1	15643	15643		60.984	34.869	1	104600			28250	908	16262	16723	22580	22580					0.059403635508715524
VFIKYLPEW	9	Unmodified						0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.831517	1193.64848	1.4452	0.000864	-3.05	-0.0018234	-1.6048	-0.00095937	597.8301364238997	29.159	0.096519	29.151	29.079	29.175	-0.0077209	1149	34	0.92958635	0.020187557	0.9280669	376.63354		8.17923	0.16469	-0.0012818	0.0001579	NaN	58.2	49	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3354.4			28251	908	16262	16723							0.059403635508715524
VFIMVFLF	8	Unmodified	_VFIMVFLF_					0	0	0		tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	508.28789988375	2	508.2879	1014.56125	1.0002	0.0005084	-8.5613	-0.0043516	-7.5611	-0.0038432	508.28359470000123	29.038	0.19305	29.031	28.982	29.175	-0.0077229	1308	52	0.83204526	0.031371415	0.8305259	337.7927	0	12.7361145						278	9	3	NaN	NaN	NaN	0.71635	1	8988	8988		18.034	0	1	62630			28252	13806	16263	16724	22581	22581					0.054548660756267964
VFIMVFLF	8	Unmodified						0	0	0		tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	508.2879	1014.56125	1.7235	0.00087604	-9.2052	-0.0046789	-7.4817	-0.0038028	508.28301686780003	29.015	0.21721	29.015	28.967	29.184	0	1308	46	0.83204526	0.027683675	0.83204526	337.79272		11.238953	-0.0078112	-0.00048524	0.00075972	NaN	18.034	300	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67144			28253	13806	16263	16724							0.054548660756267964
VFIQGIASF	9	Unmodified	_VFIQGIASF_					0	0	0		nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	nc|ENSG00000071967|Q53TN4-2|CYBRD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.540394295	1	981.540394	980.533118	1.6962	0.0016649	-5.2628	-0.0051657	-3.5666	-0.0035008	981.5357577303492	30.511	0.14477	30.511	30.463	30.608	0	213	82	1.4926696	0.04789877	1.4926696	303.14105	0	9.7276						316	7	4	NaN	NaN	NaN	0.27608	1	7904	7904		20.449	2.6497	1	45669			28254	7908	16264	16725	22582	22582					0.04207259419899856
VFIQPFPWSF	10	Unmodified	_VFIQPFPWSF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.3291419217501	2	634.329142	1266.64373	0.69356	0.00043995	-2.9913	-0.0018974	-2.2977	-0.0014575	634.3276601079705	38.564	0.19227	38.564	38.492	38.684	0	1149	55	0.92958635	0.03302884	0.92958635	376.38544	0	13.37323						197	9	3	NaN	NaN	NaN	0.01359	1	18153	18153		66.656	49.798	1	19027			28255	1105	16265	16726	22583	22583					0.02107479408141444
VFIQPFPWSF	10	Unmodified	_VFIQPFPWSF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.3291419217501	2	634.329142	1266.64373	1.5171	0.00096235	-0.5494	-0.0003485	0.96772	0.00061386	634.3282815389696	38.537	0.14433	38.542	38.493	38.638	0.0040245	1146	46	0.93142134	0.027519584	0.9299019	377.12842	0	11.142578						195	7	3	NaN	NaN	NaN	0.033293	1	17348	17348		58.2	34.349	1	17857			28256	1105	16265	16726	22584	22584					0.02107479408141444
VFIVLPENI	9	Unmodified	_VFIVLPENI_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1043.6135592381	1	1043.61356	1042.60628	1.3761	0.0014361	-11.318	-0.011812	-9.9424	-0.010376	1043.602350383039	34.492	0.07235	34.491	34.467	34.539	-0.0006485	147	118	1.5316714	0.06905532	1.530152	310.805	0	14.012634						291	4	3	NaN	NaN	NaN	0.062072	1	10131	10131		41.785	3.6537	1	89739	+		28257	11057	16266	16727	22585	22585					0.08668388142518779
VFIVMVNASTD	11	Unmodified	_VFIVMVNASTD_					0	0	0			REV__ENSG00000254737|ENST00000641722|OR10G4	REV__ENSG00000254737|ENST00000641722|OR10G4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3050065109501	2	598.305007	1194.59546	1.5956	0.00095463	-9.0884	-0.0054376	-7.4928	-0.004483	598.2998458118714	17.429	0.16782	17.429	17.405	17.573	0	1173	43	0.91489893	0.025711298	0.91489893	370.67944	0	10.417145						213	8	4	NaN	NaN	NaN	0.76488	1	16293	16293		2.8895	0	1	23246	+		28258	11377	16267	16728	22586	22586					0.0059461770592861285
VFKFCWPP	8	Unmodified	_VFKFCWPP_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.2596737605501	2	512.259674	1022.50479	1.1775	0.0006032	0.076314	3.9093E-05	1.2538	0.00064229	512.2605486384779	26.601	0.0965	26.59	26.566	26.663	-0.010645	1284	40	0.8468043	0.023979485	0.8452849	343.74878	0	9.734161						103	5	3	NaN	NaN	NaN	0.79379	1	9270	9270		10.052	0.92837	1	7063.4			28259	3610	16268	16729	22587	22587					-0.005557617610406851
VFKFCWPP	8	Unmodified						0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.259674	1022.50479	1.9615	0.0010048	-1.4674	-0.00075171	0.4941	0.00025311	512.2589508155659	26.577	0.096554	26.577	26.553	26.65	0	1287	40	0.8449601	0.023979485	0.8449601	343.00015		9.734131	-0.0065948	-0.00067115	-0.00016237	NaN	10.052	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5494.9			28260	3610	16268	16729							-0.005557617610406851
VFKFHTQLDYL	11	Unmodified	_VFKFHTQLDYL_					0	0	0			REV__nc|ENSG00000170776|Q12802-5|AKAP13	REV__nc|ENSG00000170776|Q12802-5|AKAP13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.91872207713345	3	470.918722	1409.73434	1.4339	0.00067526	7.2576	0.0034177	8.6915	0.004093	471.2570972335163	21.802	0.14442	21.802	21.705	21.85	0	1374	67	0.791392	0.04071492	0.791392	480.11685	0	24.700684						223	7	3	NaN	NaN	NaN	0.68478	1	20148	20148		8.4563	0.51545	1	32709	+		28261	13169	16269	16730	22588	22588					0.045859036657702745
VFKGAGGG	8	Unmodified	_VFKGAGGG_					0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852003	1	692.372601	691.365324	0.84289	0.0005836	7.0383	0.0048731	7.8812	0.0054567	692.3772164220477	33.769	0.12063	33.769	33.697	33.817	0	753	70	1.1701111	0.041602135	1.1701111	239.00671	0	8.497635						149	6	2	NaN	NaN	NaN	0.84887	1	3058	3058		0.32989	0	1	25975			28262	7611	16270	16731	22589	22589					0.00729616945966427
VFKGAGGG	8	Unmodified	_VFKGAGGG_					0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.3726006852003	1	692.372601	691.365324	1.0327	0.000715	8.2346	0.0057014	9.2673	0.0064164	692.3784622038398	40.633	0.3841	40.633	40.561	40.945	0	663	109	1.2243022	0.06498754	1.2243022	250.07578	0	13.274338						565	17	3	NaN	NaN	NaN	0.84945	1	3064	3064		0	0	1	70713			28263	7611	16270	16731	22590	22590					0.00729616945966427
VFKGAGGG	8	Unmodified	_VFKGAGGG_					0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852003	1	692.372601	691.365324	0.94863	0.0006568	8.0464	0.0055711	8.995	0.0062279	692.3782722025275	32.875	0.24117	32.872	32.8	33.041	-0.0031052	738	85	1.179155	0.050627112	1.1776356	240.85402	0	10.34108						422	11	4	NaN	NaN	NaN	0.84945	1	2994	2994		0	0	1	59701			28264	7611	16270	16731	22591	22591					0.00729616945966427
VFKGAGGG	8	Unmodified	_VFKGAGGG_					0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852003	1	692.372601	691.365324	1.2349	0.00085498	8.0098	0.0055458	9.2447	0.0064008	692.3781571979268	35.89	0.24109	35.891	35.795	36.036	0.0011024	738	103	1.179155	0.06151533	1.1776356	240.85402	0	12.565094						482	11	2	NaN	NaN	NaN	0.84945	1	2999	2999		0	0	1	192700			28265	7611	16270	16731	22592	22592					0.00729616945966427
VFKGAGGG	8	Unmodified	_VFKGAGGG_					0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852003	1	692.372601	691.365324	1.3223	0.00091553	8.5081	0.0058908	9.8304	0.0068063	692.3785056244988	38.417	0.26448	38.421	38.349	38.614	0.0040245	651	73	1.2315145	0.043278694	1.229995	251.54897	0	8.840103						363	12	3	NaN	NaN	NaN	0.84887	1	3004	3004		0.32989	0	1	59732			28266	7611	16270	16731	22593	22593					0.00729616945966427
VFKGAGGG	8	Unmodified						0	0	0		ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	ENST00000563399.5_1_16:30662065-30664184:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	692.372601	691.365324	1.2527	0.00086731	8.0925	0.005603	9.3451	0.0064703	692.378239029187	32.876	0.26551	32.876	32.804	33.069	0	738	88	1.179155	0.052443624	1.179155	240.85402		10.712128	0.0020855	1.8129E-05	0.00075972	NaN	0	477	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65956			28267	7611	16270	16731							0.00729616945966427
VFKGGGGA	8	Unmodified	_VFKGGGGA_					0	0	0		ENST00000539735.5_1_12:6833379-6833820:+|nuORF	ENST00000539735.5_1_12:6833379-6833820:+|nuORF	ENST00000539735.5_1_12:6833379-6833820:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	692.3726006852002	1	692.372601	691.365324	0.54876	0.00037994	7.0788	0.0049011	7.6275	0.0052811	692.3774371256117	33.792	0.072418	33.79	33.718	33.79	-0.0018501	750	79	1.1719203	0.04703605	1.1704009	239.37625	0	9.607574						148	4	4	NaN	NaN	NaN	0.84887	1	2989	2989		0.32989	0	1	20571			28268	7492	16271	16732	22594	22594					0.007296169459550583
VFKLWPLSF	9	Unmodified	_VFKLWPLSF_					0	0	0		nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8287777810001	2	568.828778	1135.643	1.4831	0.00084365	-2.3868	-0.0013577	-0.9037	-0.00051405	569.3283632593958	34.3	0.21702	34.3	34.228	34.445	0	1206	37	0.894683	0.022066832	0.894683	362.70352	0	8.945862						151	10	2	NaN	NaN	NaN	0.33202	1	14309	14309		16.858	9.2707	1	15428			28269	363	16272	16733	22595	22595					0.08060684759084324
VFKLWPLSF	9	Unmodified	_VFKLWPLSF_					0	0	0		nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.8287777810001	2	568.828778	1135.643	0.97364	0.00055383	-1.272	-0.00072358	-0.29841	-0.00016974	568.8281823870401	34.395	0.24097	34.395	34.25	34.491	-0.0006485	1203	46	0.8965218	0.02758503	0.89500237	363.44897	0	11.182953						159	11	2	NaN	NaN	NaN	0.33629	1	13842	13842		16.584	6.8382	1	16234			28270	363	16272	16733	22596	22596					0.08060684759084324
VFLAIPLAF	9	Unmodified	_VFLAIPLAF_					0	0	0		nc|ENSG00000105971|P51636-2|CAV2;ENST00000495841.1_1_7:116140184-116146172:+|nuORF;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-2|CAV2	nc|ENSG00000105971|P51636-2|CAV2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.6022662703002	1	990.602266	989.59499	1.328	0.0013155	1.4402	0.0014267	2.7682	0.0027422	990.6033305744484	39.935	0.1444	39.935	39.887	40.032	0	120	67	1.5476005	0.03891909	1.5476005	314.25684	0	7.902954						273	7	3	NaN	NaN	NaN	0.10053	1	8219	8219		35.745	7.884	1	38550			28271	1579	16273	16734	22597	22597					0.09977610839052886
VFLAIPLAF	9	Unmodified	_VFLAIPLAF_					0	0	0		nc|ENSG00000105971|P51636-2|CAV2;ENST00000495841.1_1_7:116140184-116146172:+|nuORF;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-2|CAV2	nc|ENSG00000105971|P51636-2|CAV2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.6022662703002	1	990.602266	989.59499	1.4112	0.0013979	0.62421	0.00061834	2.0354	0.0020163	990.6024635913171	39.909	0.14459	39.915	39.867	40.012	0.0060463	117	73	1.5493695	0.042461753	1.54785	314.61606	0	8.622314						293	7	3	NaN	NaN	NaN	0.015198	1	8048	8048		78.076	23.497	1	41911			28272	1579	16273	16734	22598	22598					0.09977610839052886
VFLASDIYD	9	Unmodified	_VFLASDIYD_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7582151063501	2	521.758215	1041.50188	1.6389	0.00085509	-0.90855	-0.00047405	0.73031	0.00038105	521.758443149025	36.155	0.14452	36.157	36.036	36.181	0.0011024	1281	40	0.84864825	0.023971736	0.8471288	344.41385	0	9.728638						80	7	2	NaN	NaN	NaN	0.45297	1	10060	10060		11.548	0.94349	1	6247.7			28273	5916	16274	16735	22599	22599					-0.01721358404847706
VFLDYECGI	9	Unmodified	_VFLDYECGI_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7467931403	2	529.746793	1057.47903	1.3952	0.00073912	-3.4802	-0.0018436	-2.0849	-0.0011045	529.7465545627971	36.133	0.12064	36.133	36.085	36.205	0	1278	43	0.85049206	0.025811553	0.85049206	345.0941	0	10.473206						178	6	5	NaN	NaN	NaN	0.27442	1	10968	10968		20.555	0.10679	1	18086			28274	5986	16275	16736	22600	22600					-0.047407007939682444
VFLDYECGI	9	Unmodified						0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.746793	1057.47903	0.95445	0.00050562	-3.1544	-0.001671	-2.1999	-0.0011654	529.7462883484303	36.131	0.19283	36.132	36.084	36.277	0.0011024	1275	52	0.85233563	0.0313375	0.8508162	345.84213		12.715424	-0.0002668	0.00016409	0.00016207	NaN	20.555	183	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24625			28275	5986	16275	16736							-0.047407007939682444
VFLETRLAF	9	Unmodified	_VFLETRLAF_					0	0	0		ENST00000409807.5_1_2:106013113-106013155:-|nuORF;ENST00000322142.12_1_2:106013113-106015436:-|nuORF	ENST00000409807.5_1_2:106013113-106013155:-|nuORF	ENST00000409807.5_1_2:106013113-106013155:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.31349185755	2	548.313492	1094.61243	1.0668	0.00058495	-8.9244	-0.0048934	-7.8575	-0.0043084	548.311842763312	27.373	0.096523	27.363	27.339	27.436	-0.010126	1215	100	0.8891654	0.060765862	0.88764596	360.62875	0	24.645477						181	5	3	NaN	NaN	NaN	0.070055	1	12293	12293		40.154	5.715	1	24177			28276	6484	16276	16737	22601	22601					0.0689090637404206
VFLETRLAF	9	Unmodified						0	0	0		ENST00000409807.5_1_2:106013113-106013155:-|nuORF;ENST00000322142.12_1_2:106013113-106015436:-|nuORF	ENST00000409807.5_1_2:106013113-106013155:-|nuORF	ENST00000409807.5_1_2:106013113-106013155:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.313492	1094.61243	1.1574	0.00063462	-2.7713	-0.0015196	-1.6139	-0.00088495	548.312456082158	27.35	0.072439	27.35	27.326	27.398	0	1212	61	0.8910048	0.03679794	0.8910048	361.37476		14.92453	-0.0066275	0.0019078	0.0016794	NaN	40.154	135	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18306			28277	6484	16276	16737							0.0689090637404206
VFLFVSFLFL	10	Unmodified	_VFLFVSFLFL_					0	0	0			REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2423659781333	3	411.242366	1230.70527	2.0899	0.00085947	2.6739	0.0010996	4.7638	0.0019591	411.24350435270924	26.263	0.024122	26.263	26.239	26.263	0	1419	31	0.76361835	0.018532872	0.76361835	463.92035	0	11.259277						33	2	2	NaN	NaN	NaN	0.77585	1	17285	17285		1.5256	0.15597	1	2670.2	+		28278	9143	16277	16738	22602	22602					0.0991441110741107
VFLGASYLL	9	Unmodified	_VFLGASYLL_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5607953861	1	982.560795	981.553519	1.3809	0.0013568	0.16076	0.00015795	1.5416	0.0015148	982.5613327586152	32.899	0.1688	32.897	32.873	33.042	-0.0024757	153	61	1.5281296	0.03542614	1.5266101	310.33798	0	7.194458						218	8	3	NaN	NaN	NaN	0.22308	1	7773	7773		23.85	0	1	29340			28279	1764	16278	16739	22603	22603					0.062004300797070755
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.26855303765	2	470.268553	938.522553	1.2832	0.00060343	-2.0237	-0.00095169	-0.74055	-0.00034826	470.26792291574475	21.585	0.12047	21.585	21.537	21.657	0	1341	43	0.8117308	0.025870264	0.8117308	329.90247	0	10.51416						159	6	3	NaN	NaN	NaN	0.084037	1	6792	6792		38.131	11.399	1	31580			28280	6634	16279	16740	22604	22604					0.05083276765469691
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.26855303765	2	470.268553	938.522553	0.4113	0.00019342	-0.80094	-0.00037666	-0.38964	-0.00018324	470.2679157209914	21.585	0.12038	21.571	21.547	21.667	-0.013895	1341	43	0.8117308	0.025867462	0.81021136	329.90247	0	10.513031						155	6	4	NaN	NaN	NaN	0.064504	1	6654	6654		40.957	16.056	1	28630			28281	6634	16279	16740	22605	22605					0.05083276765469691
VFLLKPLKW	9	Unmodified	_VFLLKPLKW_					0	0	0		ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000517325.5_1_8:23104188-23118109:+|nuORF	ENST00000517325.5_1_8:23104188-23118109:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.9144722335333	3	381.914472	1142.72159	2.1381	0.00081658	-4.3066	-0.0016448	-2.1685	-0.00082818	381.9127156972176	26.215	0.048256	26.215	26.191	26.239	0	1425	25	0.7599118	0.014827907	0.7599118	462.06195	0	9.016083						44	3	2	NaN	NaN	NaN	0.47587	1	14564	14564		6.4299	3.7257	1	2863.3			28282	3597	16280	16741	22606	22606					0.15593537064160046
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7820245536501	2	563.782025	1125.5495	1.4195	0.00080029	-0.71191	-0.00040136	0.7076	0.00039893	563.7813195026552	32.804	0.12062	32.804	32.756	32.876	0	1236	58	0.876284	0.034978867	0.876284	355.2828	0	14.181885						176	6	3	NaN	NaN	NaN	0.507	1	13901	13901		19.164	8.5586	1	22583			28283	3076	16281	16742	22607	22607					-0.008256594139993467
VFLPDNGAFF	10	Unmodified						0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.782025	1125.5495	0.97956	0.00055226	-1.4873	-0.00083853	-0.50777	-0.00028627	563.7808593701313	32.803	0.14476	32.8	32.751	32.896	-0.0031052	1230	67	0.8799654	0.040495276	0.878446	356.7754		16.418488	-0.0020814	-0.00046389	0.001081	NaN	19.164	230	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27380			28284	3076	16281	16742							-0.008256594139993467
VFLQNKSFI	9	Unmodified	_VFLQNKSFI_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|219|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|219|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.31349185755	2	548.313492	1094.61243	1.1574	0.00063462	-2.7713	-0.0015196	-1.6139	-0.00088495	548.312456082158	27.35	0.072439	27.35	27.326	27.398	0	1212	61	0.8910048	0.03679794	0.8910048	361.37476	0	14.92453						135	4	4	NaN	NaN	NaN	0.13602	1	12621	12621		30.61	1.9436	1	18306	+		28285	13051	16282	16743	22608	22608					0.0689090637404206
VFLQSARDYLI	11	Unmodified	_VFLQSARDYLI_					0	0	0		nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2	nc|ENSG00000135749|A6NKB5-2|PCNX2	nc|ENSG00000135749|A6NKB5-2|PCNX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8666198503001	2	662.86662	1323.71869	2.5329	0.001679	-4.7356	-0.0031391	-2.2027	-0.0014601	662.8634564045985	25.66	0.096466	25.648	25.6	25.696	-0.011602	1098	52	0.960755	0.03113848	0.9592356	388.82455	0	12.60199						102	5	3	NaN	NaN	NaN	0.70497	1	18305	18305		7.1304	0.14601	1	8199.3			28286	2958	16283	16744	22609	22609					0.06977617148709214
VFLQSARDYLI	11	Unmodified						0	0	0		nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000135749|ENST00000258229|PCNX2	nc|ENSG00000135749|A6NKB5-2|PCNX2	nc|ENSG00000135749|A6NKB5-2|PCNX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	662.86662	1323.71869	1.9698	0.0013057	-5.5081	-0.0036512	-3.5384	-0.0023455	663.3632892101323	25.636	0.072426	25.636	25.612	25.684	0	1104	49	0.9570911	0.02930522	0.9570911	387.34174		11.860046	-0.0061371	-0.00068751	-0.0010723	NaN	7.1304	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8669.1			28287	2958	16283	16744							0.06977617148709214
VFLSNEERH	9	Unmodified	_VFLSNEERH_					0	0	0			REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF	REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.78308718615	2	565.783087	1129.55162	1.843	0.0010427	-3.9275	-0.0022221	-2.0846	-0.0011794	565.779414706469	27.712	0.19303	27.712	27.639	27.833	0	1191	94	0.90387505	0.05701524	0.90387505	366.45367	0	23.115417						259	9	2	NaN	NaN	NaN	0.2345	1	14060	14060		23.118	0.031776	1	40817	+		28288	12698	16284	16745	22610	22610					-0.007972306761985237
VFLTKYTLE	9	Unmodified	_VFLTKYTLE_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.31315750655	2	557.313158	1112.61176	1.5775	0.00087917	-2.3555	-0.0013128	-0.77803	-0.00043361	557.3107760307723	23.61	0.09639	23.61	23.562	23.658	0	1212	40	0.8910048	0.023909628	0.8910048	361.30206	0	9.695343						102	5	3	NaN	NaN	NaN	0.2345	1	13389	13389		23.118	2.6689	1	10452	+		28289	8399	16285	16746	22611	22611					0.05996066934335431
VFLTKYTLE	9	Unmodified	_VFLTKYTLE_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.31315750655	2	557.313158	1112.61176	1.7822	0.00099324	-2.9728	-0.0016568	-1.1906	-0.00066353	557.3112002633868	23.634	0.072298	23.621	23.596	23.669	-0.013048	1212	49	0.8910048	0.029435158	0.88948536	361.30206	0	11.935944						91	4	2	NaN	NaN	NaN	0.61852	1	13011	13011		4.7291	0.76056	1	11806	+		28290	8399	16285	16746	22612	22612					0.05996066934335431
VFLTKYTLE	9	Unmodified						0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	557.313158	1112.61176	1.5775	0.00087917	-2.3555	-0.0013128	-0.77803	-0.00043361	557.3107760307723	23.61	0.09639	23.61	23.562	23.658	0	1212	40	0.8910048	0.023909628	0.8910048	361.30206		9.695343	-0.0054111	0.00035554	0.00075972	NaN	23.118	102	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10452	+		28291	8399	16285	16746							0.05996066934335431
VFLTKYTLE	9	Unmodified						0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.313158	1112.61176	1.7822	0.00099324	-2.9728	-0.0016568	-1.1906	-0.00066353	557.3112002633868	23.634	0.072298	23.621	23.596	23.669	-0.013048	1212	49	0.8910048	0.029435158	0.88948536	361.30206		11.935944	0.0054111	-0.00033243	-0.00075972	NaN	23.118	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11806	+		28292	8399	16285	16746							0.05996066934335431
VFLWNKVY	8	Unmodified	_VFLWNKVY_					0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7974776526	2	534.797478	1067.5804	1.9989	0.001069	-11.027	-0.005897	-9.0277	-0.004828	534.7916860817589	25.178	0.0965	25.178	25.129	25.226	0	1245	58	0.87076044	0.03499776	0.87076044	353.2752	0	14.198883						157	5	3	NaN	NaN	NaN	0.82797	1	11457	11457		5.4659	1.4973	1	13422	+		28293	13631	16286	16747	22613	22613					0.049315386908801884
VFLWNKVY	8	Unmodified						0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.797478	1067.5804	1.9989	0.001069	-11.027	-0.005897	-9.0277	-0.004828	534.7916860817589	25.178	0.0965	25.178	25.129	25.226	0	1245	58	0.87076044	0.03499776	0.87076044	353.2752		14.198883	-0.018017	-0.0012878	0.00075972	NaN	5.4659	157	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13422	+		28294	13631	16286	16747							0.049315386908801884
VFLWNKVY	8	Unmodified						0	0	0			REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	REV__tr|U7T6T8|U7T6T8_FUSNUThree-Cys-motifpartnerproteinTcmPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00005PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.797478	1067.5804	1.3105	0.00070088	-7.2063	-0.0038539	-5.8958	-0.003153	534.7939436254183	25.226	0.1206	25.214	25.165	25.286	-0.012011	1245	64	0.87076044	0.038677573	0.869241	353.2752		15.6918335	0.018017	0.0027984	-0.00075972	NaN	5.4659	165	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17914	+		28295	13631	16286	16747							0.049315386908801884
VFMKDGFFYF	10	Unmodified	_VFMKDGFFYF_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8071850591501	2	650.807185	1299.59982	0.61352	0.00039928	-2.3296	-0.0015161	-1.7161	-0.0011169	650.8071658813841	31.451	0.2172	31.447	31.399	31.616	-0.0044155	1095	73	0.9625867	0.043981552	0.96106726	389.6405	0	17.80304						290	10	2	NaN	NaN	NaN	0.044307	1	17941	17941		53.652	27.851	1	77774			28296	5645	16287	16748	22614	22614					-0.03799873080492944
VFMKDGFFYF	10	Unmodified						0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	650.807185	1299.59982	0.87548	0.00056977	-5.5668	-0.0036229	-4.6913	-0.0030531	650.807013358753	31.428	0.14481	31.428	31.356	31.501	0	1098	79	0.960755	0.047651827	0.960755	388.8991		19.288727	-0.0093327	-0.0021479	-0.00015612	NaN	53.652	386	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85836			28297	5645	16287	16748							-0.03799873080492944
VFMKSVKLEW	10	Unmodified	_VFMKSVKLEW_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.9020149721	3	422.902015	1265.68422	1.7421	0.00073672	-2.7289	-0.0011541	-0.98683	-0.00041733	422.9004297849769	23.393	0.072372	23.393	23.369	23.441	0	1407	31	0.77102906	0.018522859	0.77102906	468.27924	0	11.249725						88	4	3	NaN	NaN	NaN	0.71817	1	18129	18129		6.8076	0.37764	1	7318.5			28298	1304	16288	16749	22615	22615					0.062000777362527515
VFMLCSNFW	9	Unmodified	_VFMLCSNFW_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7591806215502	2	573.759181	1145.50381	1.5939	0.00091451	-5.9787	-0.0034303	-4.3848	-0.0025158	573.7556829823266	20.189	0.04805	20.189	20.165	20.213	0	1257	37	0.86339295	0.022109807	0.86339295	349.98245	0	8.962341						74	3	3	NaN	NaN	NaN	0.6532	1	14629	14629		3.2116	1.0353	1	7909.1			28299	4784	16289	16750	22616	22616					-0.06312344192224373
VFMRWKEQF	9	Unmodified	_VFMRWKEQF_					0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.8237007906	2	635.823701	1269.63285	1.5114	0.00096099	-1.2136	-0.00077163	0.29783	0.00018937	635.8235739735638	21.272	0.12036	21.272	21.248	21.368	0	1119	34	0.9479278	0.020165801	0.9479278	383.80203	0	8.164856						108	6	3	NaN	NaN	NaN	0.064504	1	18231	18231		40.957	17.839	1	9035			28300	3303	16290	16751	22617	22617					0.008817537621780502
VFMRWKEQF	9	Unmodified						0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	635.823701	1269.63285	1.9964	0.0012694	-2.9	-0.0018439	-0.90362	-0.00057454	636.3239276762343	21.464	0.14452	21.45	21.378	21.523	-0.014006	1122	31	0.9460945	0.018333495	0.9445751	383.05978		7.423004	0.089303	-0.0010889	-0.0016763	NaN	40.957	90	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5668.4			28301	3303	16290	16751							0.008817537621780502
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;CAPZA1|p.T217Ffs*15|1|0.14|ENSG00000116489|chr1:112667133-112667136|ACTA/-|frameshift_variant	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.8267664083002	2	544.826766	1087.63898	1.3493	0.00073512	-0.87698	-0.0004778	0.47229	0.00025732	544.8259588558568	28.75	0.096523	28.75	28.725	28.822	0	1167	55	0.91857195	0.033053815	0.91857195	372.58514	0	13.407074						125	5	3	NaN	NaN	NaN	0.2345	1	12295	12295		23.118	11.569	1	15166			28302	5832	16291	16752	22618	22618					0.09866595265384603
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;CAPZA1|p.T217Ffs*15|1|0.14|ENSG00000116489|chr1:112667133-112667136|ACTA/-|frameshift_variant	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.8267664083002	2	544.826766	1087.63898	1.1773	0.00064143	-0.54351	-0.00029612	0.6338	0.00034531	544.8260079682215	28.773	0.096529	28.765	28.716	28.813	-0.0083504	1164	46	0.9204082	0.027543366	0.91888875	373.32996	0	11.171967						113	5	3	NaN	NaN	NaN	0.12104	1	11989	11989		32.778	8.216	1	13291			28303	5832	16291	16752	22619	22619					0.09866595265384603
VFNGLSIL	8	Unmodified	_VFNGLSIL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	862.5032805072002	1	862.503281	861.496004	1.3214	0.0011397	1.7471	0.0015068	3.0685	0.0026466	862.5044338036051	31.572	0.048279	31.568	31.544	31.592	-0.0044155	366	37	1.4019053	0.02141428	1.4003859	285.25266	0	4.3572693						50	3	2	NaN	NaN	NaN	0.80692	1	5418	5418		8.2903	0.74991	1	3246.3			28304	4973	16292	16753	22620	22620					0.05971587874148554
VFNHQLTP	8	Unmodified	_VFNHQLTP_					0	0	0			REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|7|2|sense	REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|7|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.2534342897	2	478.253434	954.492316	1.2422	0.00059408	-9.3119	-0.0044534	-8.0697	-0.0038593	478.24951912524773	20.622	0.072229	20.622	20.573	20.646	0	1359	64	0.8006399	0.038828433	0.8006399	325.3164	0	15.776794						134	4	3	NaN	NaN	NaN	0.80692	1	7193	7193		8.2903	0.045466	1	15580	+		28305	13015	16293	16754	22621	22621					0.01324918100283412
VFNSDPPS	8	Unmodified	_VFNSDPPS_					0	0	0			REV__ENSG00000179580|ENST00000569714|RNF151	REV__ENSG00000179580|ENST00000569714|RNF151	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	862.3941239883001	1	862.394124	861.386848	2.7543	0.0023753	0.1372	0.00011832	2.8915	0.0024936	862.3947369974035	26.07	0.3137	26.059	26.011	26.324	-0.011137	465	199	1.3429124	0.11835742	1.341393	273.24963	0	24.082825						1227	14	4	NaN	NaN	NaN	0.30832	1	5411	5411		41.46	4.1577	1	910170	+		28306	10809	16294	16755	22622	22622					-0.04939042815999528
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2687500029001	2	537.26875	1072.52295	2.1429	0.0011513	-2.4009	-0.0012899	-0.25798	-0.00013861	537.2674194626301	21.248	0.6743	21.248	20.959	21.633	0	1278	88	0.85049206	0.053458035	0.85049206	345.03186	0	21.687134						724	29	2	NaN	NaN	NaN	0.084037	1	11659	11659		38.131	12.33	1	476530			28307	3760	16295	16756	22623	22623					-0.010413483053298478
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.2687500029001	2	537.26875	1072.52295	1.6344	0.00087814	-1.0051	-0.00054001	0.62935	0.00033813	537.2681322826097	21.272	0.57793	21.258	21.017	21.595	-0.014004	1278	73	0.85049206	0.044248343	0.8489726	345.03183	0	17.950897						577	25	2	NaN	NaN	NaN	0.11656	1	11358	11358		33.425	11.59	1	443350			28308	3760	16295	16756	22624	22624					-0.010413483053298478
VFPFRTFYL	9	Unmodified	_VFPFRTFYL_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3238595786001	2	595.32386	1188.63317	0.81947	0.00048785	-5.1741	-0.0030803	-4.3547	-0.0025924	595.3202094500483	30.752	0.33784	30.746	30.601	30.939	-0.0057545	1164	82	0.9204082	0.049556673	0.91888875	372.9329	0	20.079498						543	15	3	NaN	NaN	NaN	0.21451	1	15514	15514		24.4	11.397	1	71846			28309	756	16296	16757	22625	22625					0.04639496753725325
VFPFRTFYL	9	Unmodified						0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.32386	1188.63317	0.91265	0.00054332	-3.5203	-0.0020957	-2.6076	-0.0015524	595.3213643546856	30.68	0.19307	30.68	30.632	30.825	0	1164	76	0.9204082	0.0458858	0.9204082	372.9329		18.592133	-0.032802	0.0010038	0.00075972	NaN	24.4	418	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56574			28310	756	16296	16757							0.04639496753725325
VFPGARLL	8	Unmodified	_VFPGARLL_					0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1;CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5352493376002	1	872.535249	871.527973	0.59682	0.00052075	7.8517	0.0068509	8.4485	0.0073717	872.5419392443954	31.355	0.072361	31.35	31.326	31.398	-0.0050716	393	61	1.3858368	0.035728455	1.3843174	281.9321	0	7.2685547						113	4	3	NaN	NaN	NaN	0.84207	1	5551	5551		3.5732	0	1	18358			28311	3374	16297	16758	22626	22626					0.08707000347953908
VFPGARLL	8	Unmodified						0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1;CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.535249	871.527973	0.72218	0.00063013	9.4692	0.0082622	10.191	0.0088923	872.5432686486888	31.356	0.096537	31.356	31.332	31.428	0	396	64	1.3840506	0.037520766	1.3840506	281.5687		7.6331787	0.0030455	0.00051471	-0.00013344	NaN	3.5732	152	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24185			28312	3374	16297	16758							0.08707000347953908
VFPKEPVEL	9	Unmodified	_VFPKEPVEL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.3000501313	2	529.30005	1056.58555	1.0489	0.00055517	-3.0076	-0.0015919	-1.9587	-0.0010367	529.298836299494	22.838	0.24105	22.824	22.704	22.945	-0.01354	1284	76	0.8468043	0.046084464	0.8452849	343.60147	0	18.699371						247	11	2	NaN	NaN	NaN	0.53317	1	10727	10727		8.2448	1.9946	1	25680			28313	6036	16298	16759	22627	22627					0.059517977628502194
VFPKEPVEL	9	Unmodified						0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.30005	1056.58555	1.8677	0.00098859	-3.5934	-0.001902	-1.7257	-0.00091341	529.2988084353509	22.79	0.19297	22.79	22.694	22.887	0	1284	91	0.8468043	0.055298448	0.8468043	343.60147		22.438019	-0.016988	-0.00032774	0.00075972	NaN	8.2448	204	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23129			28314	6036	16298	16759							0.059517977628502194
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.3613077174001	2	621.361308	1240.70806	1.3073	0.00081233	-2.5573	-0.001589	-1.2499	-0.00077667	621.3593304653392	24.912	0.096533	24.912	24.864	24.96	0	1086	34	0.9680805	0.020139694	0.9680805	392.0599	0	8.156342						102	5	3	NaN	NaN	NaN	0.65442	1	17549	17549		11.17	2.88	1	8851.8			28315	2960	16299	16760	22628	22628					0.09733679284931895
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.57663063380005	3	414.576631	1240.70806	1.4716	0.00061008	-1.0892	-0.00045156	0.38236	0.00015852	414.5759952167063	24.912	0.072409	24.912	24.888	24.96	0	1470	34	0.7320868	0.020420492	0.7320868	444.72433	0	12.404938						77	4	3	NaN	NaN	NaN	0.72631	1	17550	17550		2.9701	0.73111	1	6514			28316	2960	16299	16760	22629	22629					0.09733679284931895
VFPSMPIKLQL	11	Unmodified	_VFPSMPIKLQL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.8728593211501	2	636.872859	1271.73117	1.3474	0.00085812	-4.4068	-0.0028066	-3.0594	-0.0019485	636.8703268623219	30.608	0.12069	30.608	30.535	30.656	0	1122	61	0.9460945	0.036651254	0.9460945	383.053	0	14.839294						177	6	3	NaN	NaN	NaN	0.54514	1	18268	18268		16.858	3.3953	1	17779			28317	2586	16300	16761	22630	22630					0.106169372874092
VFPSMPIKLQL	11	Unmodified						0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	636.872859	1271.73117	1.3105	0.00083462	-5.1292	-0.0032667	-3.8187	-0.002432	636.868758383643	30.607	0.14476	30.601	30.529	30.673	-0.0057545	1119	58	0.9479278	0.0348168	0.94640833	383.79526		14.096558	-0.0033951	-0.00043	0.00015691	NaN	16.858	209	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18666			28318	2586	16300	16761							0.106169372874092
VFPSSCLA	8	Unmodified	_VFPSSCLA_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM;ENST00000513648.5_1_5:102201854-102209236:+|nuORF	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.4018519031001	1	823.401852	822.394575	2.3685	0.0019503	-4.7577	-0.0039175	-2.3892	-0.0019673	823.3973986397754	25.974	0.14481	25.974	25.95	26.094	0	492	58	1.3267875	0.034059763	1.3267875	270.16965	0	6.9355164						136	7	2	NaN	NaN	NaN	0.59262	1	5047	5047		25.752	1.9013	1	21332			28319	3529	16301	16762	22631	22631					-0.02372606820074452
VFPTKSSF	8	Unmodified	_VFPTKSSF_					0	0	0			REV__ENSG00000111913|ENST00000643898|RIPOR2	REV__ENSG00000111913|ENST00000643898|RIPOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	912.4825450651001	1	912.482545	911.475269	1.3384	0.0012213	-0.73006	-0.00066617	0.60833	0.00055509	912.4809455293201	32.779	0.072414	32.776	32.751	32.824	-0.0031052	327	49	1.425088	0.028512955	1.4235686	289.71985	0	5.7966614						142	4	3	NaN	NaN	NaN	0.528	1	6130	6130		29.598	4.6373	1	13578	+		28320	9110	16302	16763	22632	22632					0.015989974944773166
VFPTRTARF	9	Unmodified	_VFPTRTARF_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.80890800615	2	547.808908	1093.60326	1.5125	0.00082855	-1.196	-0.00065516	0.31652	0.00017339	547.8086824658304	16.302	0.16805	16.302	16.23	16.398	0	1191	34	0.90387505	0.020218074	0.90387505	366.59888	0	8.200165						167	8	3	NaN	NaN	NaN	0.25548	1	12575	12575		21.771	9.1832	1	15447			28321	5954	16303	16764	22633	22633					0.060205578083468936
VFPYDMGS	8	Unmodified	_VFPYDMGS_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.19947880695	2	458.199479	914.384405	0.93528	0.00042854	-1.3553	-0.000621	-0.42002	-0.00019245	458.19934518286266	28.774	0.096523	28.774	28.725	28.822	0	1407	73	0.77102906	0.044421136	0.77102906	313.4799	0	18.060455						104	5	2	NaN	NaN	NaN	0.80071	1	6306	6306		9.1232	0.83292	1	7651.3			28322	465	16304	16765	22634	22634					-0.07621214545304156
VFQAGLVNLLF	11	Unmodified	_VFQAGLVNLLF_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.8555238477501	2	610.855524	1219.69649	0.13982	8.5408E-05	-0.67965	-0.00041517	-0.53983	-0.00032976	610.8548471293994	38.492	0.096146	38.492	38.468	38.564	0	1140	55	0.93509084	0.033021748	0.93509084	378.7713	0	13.375885						112	5	2	NaN	NaN	NaN	0.54514	1	16982	16982		16.858	4.8096	1	13167			28323	3680	16305	16766	22635	22635					0.09543437470938443
VFQAGLVNLLF	11	Unmodified						0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	610.855524	1219.69649	0.9828	0.00060035	-1.8955	-0.0011579	-0.91269	-0.00055752	610.8541428756257	38.513	0.096153	38.517	38.445	38.542	0.0040245	1140	70	0.93509084	0.04220128	0.9335714	378.7713		17.094208	0.012913	-0.00049918	-0.00075972	NaN	16.858	150	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12545			28324	3680	16305	16766							0.09543437470938443
VFQNFPLLF	9	Unmodified	_VFQNFPLLF_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.81058502785	2	562.810585	1123.60662	1.0339	0.00058189	-0.54501	-0.00030674	0.48889	0.00027515	562.8105512510745	37.602	0.12034	37.602	37.554	37.675	0	1236	55	0.876284	0.03312534	0.876284	355.29025	0	13.430664						178	6	3	NaN	NaN	NaN	0.094712	1	13838	13838		36.586	11.625	1	17727			28325	6768	16306	16767	22636	22636					0.049758078623654
VFQNFPLLF	9	Unmodified	_VFQNFPLLF_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.81058502785	2	562.810585	1123.60662	1.1657	0.00065606	-2.8053	-0.0015788	-1.6396	-0.00092277	562.8092182508299	37.6	0.14438	37.603	37.579	37.723	0.0028267	1236	55	0.876284	0.03312534	0.8747646	355.29025	0	13.430695						220	7	3	NaN	NaN	NaN	0.12945	1	13408	13408		31.561	1.9627	1	18481			28326	6768	16306	16767	22637	22637					0.049758078623654
VFQVGSSG	8	Unmodified	_VFQVGSSG_					0	0	0		ENST00000534131.1_1_11:88068041-88070840:-|nuORF;nc|ENSG00000109861|P53634-2|CTSC;nc|ENSG00000109861|P53634-3|CTSC;ENST00000393301.4_1_11:88059607-88070840:-|nuORF;ENSG00000109861|ENST00000227266|CTSC	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	ENST00000534131.1_1_11:88068041-88070840:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.3886446799003	1	780.388645	779.381368	1.7944	0.0014004	5.2209	0.0040743	7.0153	0.0054746	780.3926921060724	36.372	0.048134	36.374	36.35	36.398	0.0016747	495	106	1.3249949	0.06275511	1.3234755	270.04913	0	12.790222						147	3	2	NaN	NaN	NaN	0.57691	1	4400	4400		26.732	0	1	12956			28327	1737	16307	16768	22638	22638					-0.017147216077887606
VFRLQFDEF	9	Unmodified	_VFRLQFDEF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8060309662001	2	600.806031	1199.59751	1.7407	0.0010458	-0.67617	-0.00040625	1.0645	0.00063957	600.805785242466	28.46	0.16895	28.46	28.363	28.532	0	1173	97	0.91489893	0.05880046	0.91489893	370.66174	0	23.822388						387	8	3	NaN	NaN	NaN	0.38313	1	16465	16465		14.425	8.7309	1	234690			28328	800	16308	16769	22639	22639					0.005694145060488154
VFRLQFDEF	9	Unmodified						0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	600.806031	1199.59751	1.1601	0.00069697	-3.1488	-0.0018918	-1.9888	-0.0011949	600.8052427517636	28.483	0.28955	28.475	28.378	28.668	-0.0083504	1173	103	0.91489893	0.062475502	0.9133795	370.66177		25.31131	0.0075591	-0.0026761	-0.00075972	NaN	14.425	528	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263010			28329	800	16308	16769							0.005694145060488154
VFRNINHHMEF	11	Unmodified	_VFRNINHHMEF_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.90318905493325	3	481.903189	1442.68774	2.5751	0.0012409	2.0761	0.0010005	4.6512	0.0022414	481.9042777157356	26.408	0.072407	26.397	26.373	26.445	-0.011137	1371	31	0.79324204	0.018498778	0.7917226	481.13254	0	11.220245						48	4	2	NaN	NaN	NaN	0.76304	1	19368	19368		1.1021	0.11437	1	4312.2	+		28330	9637	16309	16770	22640	22640					-0.015898594371947183
VFRRNYQMRRK	11	Unmodified	_VFRRNYQMRRK_					0	0	0			REV__ENSG00000149806|ENST00000529639|FAU	REV__ENSG00000149806|ENST00000529639|FAU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.6246490505666	3	518.624649	1552.85212	0.93705	0.00048598	-0.39136	-0.00020297	0.54569	0.00028301	518.9587357951489	33.092	0.096451	33.09	33.09	33.186	-0.0024757	1320	49	0.824661	0.029543579	0.8231416	499.8527	0	17.907288						80	5	2	NaN	NaN	NaN	0.78047	1	19675	19675		0.15888	0	1	10760	+		28331	10001	16310	16771	22641	22641					0.0978057777340382
VFSAVLTAF	9	Unmodified	_VFSAVLTAF_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.5294952577	1	954.529495	953.522219	1.2797	0.0012215	0.68802	0.00065674	1.9677	0.0018782	954.5293750144956	31.983	0.048279	31.983	31.959	32.008	0	234	40	1.4802408	0.02308929	1.4802408	300.73492	0	4.690979						47	3	2	NaN	NaN	NaN	0.20577	1	7171	7171		24.961	8.5444	1	3159.5			28332	1861	16311	16772	22642	22642					0.04359857045608351
VFSEWIGG	8	Unmodified	_VFSEWIGG_					0	0	0		tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	tr|U7SN87|U7SN87_FUSNUGlutamatemutaseepsilonsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmEPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.7214356695501	2	447.721436	893.428318	1.009	0.00045175	-1.8097	-0.00081025	-0.80071	-0.00035849	447.7205446957064	35.022	0.024139	35.022	34.998	35.022	-4.5776E-05	1440	58	0.7506418	0.03522587	0.7491224	305.29688	0	14.326874						64	2	2	NaN	NaN	NaN	0.82332	1	5855	5855		6.0903	0.62448	1	8587.9			28333	13780	16312	16773	22643	22643					-0.02265862056651713
VFSLAMEE	8	Unmodified	_VFSLAMEE_					0	0	0		ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant;ENSG00000164684|ENST00000327835|ZNF704	ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant	ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	925.4335459620002	1	925.433546	924.426269	1.6049	0.0014852	0.64807	0.00059974	2.2529	0.0020849	925.4342280053868	29.232	0.096508	29.232	29.208	29.305	0	303	58	1.4393384	0.03383565	1.4393384	292.55594	0	6.87735						95	5	2	NaN	NaN	NaN	0.77489	1	6493	6493		12.588	0	1	7963.1			28334	4340	16313	16774	22644	22644					-0.03896658856774593
VFSLAMEE	8	Unmodified						0	0	0		ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant;ENSG00000164684|ENST00000327835|ZNF704	ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant	ZNF704|p.Q21E|1|0.03|ENSG00000164684|chr8:80821534-80821534|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	925.433546	924.426269	0.92891	0.00085964	0.2361	0.00021849	1.165	0.0010781	925.4338941449538	29.231	0.096518	29.224	29.2	29.296	-0.0077209	300	49	1.4411188	0.028488636	1.4395994	292.91785		5.7905273	-0.0042402	-0.00026227	0.0001305	NaN	12.588	102	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8198.7			28335	4340	16313	16774							-0.03896658856774593
VFSLCSLLF	9	Unmodified	_VFSLCSLLF_					0	0	0			REV__ENSG00000174957|ENST00000312298|OR5J2	REV__ENSG00000174957|ENST00000312298|OR5J2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5485161403	1	1028.54852	1027.54124	1.1012	0.0011326	1.0359	0.0010655	2.1371	0.0021981	1028.5496268158388	31.525	0.048252	31.525	31.477	31.525	0	162	58	1.5228153	0.033656597	1.5228153	309.06705	0	6.8308716						70	3	2	NaN	NaN	NaN	0.14945	1	9681	9681		28.667	4.1045	1	8379.6	+		28336	10714	16314	16775	22645	22645					0.02857070345021384
VFSNLVDKNF	10	Unmodified	_VFSNLVDKNF_					0	0	0			REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	REV__tr|U7SWN9|U7SWN9_FUSNUOutermembranelipoproteinBamD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01116PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8113133093501	2	591.811313	1181.60807	1.3419	0.00079416	1.4127	0.00083606	2.7546	0.0016302	591.8121487951682	29.329	0.19304	29.329	29.28	29.474	0	1191	103	0.90387505	0.062502444	0.90387505	366.2589	0	25.3266						413	9	3	NaN	NaN	NaN	0.66626	1	15888	15888		10.36	0.61416	1	69560	+		28337	13542	16315	16776	22646	22646					0.024533971604796534
VFSNVSIILF	10	Unmodified	_VFSNVSIILF_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.8289747462501	2	569.828975	1137.6434	1.5099	0.00086041	-3.2106	-0.0018295	-1.7007	-0.0009691	569.8270254825937	36.229	0.16877	36.229	36.181	36.35	0	1248	73	0.8689189	0.04417187	0.8689189	352.25134	0	17.90683						214	8	4	NaN	NaN	NaN	0.068403	1	14378	14378		50.315	21.42	1	29988			28338	2247	16316	16777	22647	22647					0.08008059688290814
VFSNVSIILF	10	Unmodified	_VFSNVSIILF_					0	0	0		nc|ENSG00000120063|Q14344-2|GNA13;ENSG00000120063|ENST00000439174|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	nc|ENSG00000120063|Q14344-2|GNA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.6506730259	1	1138.65067	1137.6434	2.7245	0.0031022	-0.26841	-0.00030563	2.4561	0.0027966	1138.6498348735352	36.229	0.024094	36.229	36.205	36.229	0	54	25	1.5864743	0.014119506	1.5864743	321.57413	0	2.861969						26	2	2	NaN	NaN	NaN	0.15916	1	14380	14380		39.039	11.25	1	1434.9			28339	2247	16316	16777	22648	22648					0.08008059688290814
VFSTGGAL	8	Unmodified	_VFSTGGAL_					0	0	0		ENST00000454309.6_1_3:192126033-192126612:-|nuORF	ENST00000454309.6_1_3:192126033-192126612:-|nuORF	ENST00000454309.6_1_3:192126033-192126612:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3984810847002	1	751.398481	750.391205	1.211	0.00090997	5.3511	0.0040208	6.5621	0.0049308	751.4034528702732	30.221	0.12063	30.214	30.19	30.311	-0.0064106	540	106	1.2980826	0.06289601	1.2965631	264.7409	0	12.827484						299	6	3	NaN	NaN	NaN	0.79379	1	3987	3987		10.052	0	1	35639			28340	7054	16317	16778	22649	22649					0.00602466397583612
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.79493496365	2	524.794935	1047.57532	1.4302	0.00075056	-0.57698	-0.0003028	0.85321	0.00044776	524.7947915119868	27.422	0.19314	27.422	27.374	27.567	0	1233	85	0.87812483	0.05153942	0.87812483	356.34958	0	20.91507						380	9	5	NaN	NaN	NaN	0.020004	1	10542	10542		71.993	28.998	1	120290			28341	1902	16318	16779	22650	22650					0.05343234828274035
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.79493496365	2	524.794935	1047.57532	1.1748	0.00061653	-0.70021	-0.00036747	0.4746	0.00024907	524.7945526024881	27.446	0.21722	27.436	27.363	27.58	-0.010126	1230	82	0.8799654	0.04969603	0.878446	357.09653	0	20.167023						376	10	4	NaN	NaN	NaN	0.024986	1	10328	10328		65.672	31.974	1	118780			28342	1902	16318	16779	22651	22651					0.05343234828274035
VFSVFSVLT	9	Unmodified	_VFSVFSVLT_					0	0	0		nc|ENSG00000198039|Q14593-2|ZNF273;ENSG00000198039|ENST00000476120|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5557100082002	1	998.55571	997.548434	1.3669	0.0013649	-1.6842	-0.0016818	-0.31732	-0.00031686	998.5544731535978	30.896	0.14485	30.891	30.866	31.011	-0.0057545	174	49	1.5157272	0.028349876	1.5142077	307.75092	0	5.7561035						175	7	3	NaN	NaN	NaN	0.043119	1	8312	8312		49.833	13.797	1	35786			28343	5750	16319	16780	22652	22652					0.04956126217109613
VFTAFTEEF	9	Unmodified	_VFTAFTEEF_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5091537460999	1	1090.50915	1089.50188	2.5042	0.0027308	-0.78028	-0.0008509	1.7239	0.0018799	1090.5090737683631	29.98	0.26549	29.98	29.908	30.173	0	114	76	1.5511382	0.044223905	1.5511382	314.5782	0	8.968842						554	12	4	NaN	NaN	NaN	1.096E-11	1	12365	12365		143.5	93.538	1	80606			28344	384	16320	16781	22653	22653					-0.03929358404866434
VFTAFTEEF	9	Unmodified	_VFTAFTEEF_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5091537460999	1	1090.50915	1089.50188	1.0365	0.0011303	-0.046016	-5.0181E-05	0.9905	0.0010801	1090.5096459365488	29.979	0.21718	29.973	29.925	30.142	-0.0064087	114	112	1.5511382	0.06541693	1.5496187	314.5782	0	13.266846						527	10	4	NaN	NaN	NaN	1.096E-11	1	12058	12058		143.5	93.667	1	80505			28345	384	16320	16781	22654	22654					-0.03929358404866434
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.276575035	2	520.276575	1038.5386	1.0108	0.00052587	-1.2861	-0.00066914	-0.27537	-0.00014327	520.2762344517708	31.79	0.072405	31.79	31.766	31.839	0	1305	61	0.83389086	0.036893547	0.83389086	338.43732	0	14.973358						101	4	3	NaN	NaN	NaN	0.094712	1	10141	10141		36.586	13.252	1	9179			28346	2535	16321	16782	22655	22655					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1039.5458736033997	1	1039.54587	1038.5386	1.1808	0.0012275	1.8646	0.0019383	3.0454	0.0031658	1039.5472191896533	31.79	0.19308	31.79	31.694	31.887	0	144	112	1.533442	0.06550014	1.533442	311.18018	0	13.29187						293	9	2	NaN	NaN	NaN	0.0023856	1	10145	10145		109.86	30.659	1	83410			28347	2535	16321	16782	22656	22656					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.276575035	2	520.276575	1038.5386	0.64413	0.00033513	-1.8909	-0.00098378	-1.2468	-0.00064866	520.276234711335	31.765	0.096588	31.761	31.737	31.833	-0.0044155	1302	40	0.8357362	0.023987234	0.8342168	339.18628	0	9.735321						103	5	3	NaN	NaN	NaN	0.16171	1	9936	9936		27.789	13.747	1	11777			28348	2535	16321	16782	22657	22657					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.D605Tfs*5|1|0.29|ENSG00000127511|chr19:16866462-16866462|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1039.5458736033997	1	1039.54587	1038.5386	0.68201	0.00070898	1.0855	0.0011284	1.7675	0.0018374	1039.547133790708	31.765	0.19311	31.761	31.688	31.881	-0.0044155	138	118	1.5369828	0.069040656	1.5354633	311.89868	0	14.010376						365	9	2	NaN	NaN	NaN	0.025843	1	9940	9940		64.55	22.765	1	86635			28349	2535	16321	16782	22658	22658					0.020869382116870838
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.31114613385	2	623.311146	1244.60774	1.3936	0.00086863	-2.2431	-0.0013981	-0.84953	-0.00052952	623.3096350755744	20.573	0.19253	20.573	20.501	20.694	0	1155	85	0.92591566	0.051422596	0.92591566	374.97076	0	20.824799						443	9	4	NaN	NaN	NaN	9.4732E-06	1	17628	17628		118.29	69.636	1	93109			28350	3297	16322	16783	22659	22659					-0.0047802255940041505
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENSG00000140988|ENST00000343262|RPS2;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENSG00000140988|ENST00000343262|RPS2	ENSG00000140988|ENST00000343262|RPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.31114613385	2	623.311146	1244.60774	0.85659	0.00053392	-0.98679	-0.00061508	-0.1302	-8.1154E-05	623.3101838447792	20.598	0.2651	20.584	20.511	20.776	-0.014088	1152	91	0.92775106	0.055095673	0.9262317	375.71405	0	22.312256						479	12	4	NaN	NaN	NaN	0.00018463	1	16886	16886		103.78	64.745	1	91909			28351	3297	16322	16783	22660	22660					-0.0047802255940041505
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.3182428844501	2	547.318243	1092.62193	1.5904	0.00087047	-0.13684	-7.4893E-05	1.4536	0.00079558	547.3179237107034	28.798	0.33791	28.798	28.677	29.015	0	1242	100	0.87260187	0.060719907	0.87260187	353.91885	0	24.62741						635	15	4	NaN	NaN	NaN	0.0035249	1	12515	12515		106.42	61.786	1	166050			28352	5870	16323	16784	22661	22661					0.07932674659582517
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.3182428844501	2	547.318243	1092.62193	1.393	0.00076241	-0.25088	-0.00013731	1.1421	0.0006251	547.3177078011436	28.797	0.21722	28.789	28.716	28.933	-0.0083504	1242	97	0.87260187	0.05888307	0.8710824	353.91885	0	23.882416						549	10	4	NaN	NaN	NaN	0.0014219	1	12202	12202		112.76	68.123	1	158110			28353	5870	16323	16784	22662	22662					0.07932674659582517
VFTNFGKG	8	Unmodified	_VFTNFGKG_					0	0	0		ENST00000599418.1_1_19:39433250-39435758:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39433250-39435758:-|nuORF	ENST00000599418.1_1_19:39433250-39435758:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.22942787715004	2	435.229428	868.444303	0.98117	0.00042703	-9.7648	-0.0042499	-8.7836	-0.0038229	435.2257321111072	29.329	0.096512	29.329	29.28	29.377	0	1407	49	0.77102906	0.029636562	0.77102906	313.7252	0	12.058868						136	5	3	NaN	NaN	NaN	0.80692	1	5642	5642		8.2903	1.4271	1	19411			28354	6170	16324	16785	22663	22663					0.00481844180239932
VFTPVTTEI	9	Unmodified	_VFTPVTTEI_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5455392523999	1	1006.54554	1005.53826	1.8515	0.0018636	-0.61742	-0.00062146	1.2341	0.0012421	1006.5446291009691	26.287	0.072361	26.276	26.252	26.324	-0.011137	243	61	1.4749115	0.0355314	1.473392	299.43134	0	7.213501						156	4	3	NaN	NaN	NaN	0.0047854	1	8641	8641		103.03	32.426	1	24451			28355	467	16325	16786	22664	22664					0.03571518491833103
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.8214840651501	2	529.821484	1057.62842	0.82523	0.00043722	0.31845	0.00016872	1.1437	0.00060595	529.8216391271945	22.139	0.072346	22.125	22.125	22.197	-0.013731	1248	64	0.8689189	0.03869009	0.86739945	352.57025	0	15.6987915						97	4	2	NaN	NaN	NaN	0.59509	1	10769	10769		5.6942	1.7256	1	12355			28356	3816	16326	16787	22665	22665					0.10190612610949756
VFTPVVQRI	9	Unmodified						0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	529.821484	1057.62842	1.7637	0.00093445	-0.024465	-1.2962E-05	1.7392	0.00092148	529.8217055164683	22.115	0.024145	22.115	22.115	22.139	0	1245	70	0.87076044	0.04237485	0.87076044	353.3175		17.193909	-0.0050076	-0.00021785	0.0016805	NaN	5.6942	85	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8784.7			28357	3816	16326	16787							0.10190612610949756
VFTTIFSL	8	Unmodified	_VFTTIFSL_					0	0	0		tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	927.5185962204001	1	927.518596	926.51132	1.9165	0.0017776	-4.9128	-0.0045567	-2.9963	-0.0027792	927.5149665384367	23.802	0.024136	23.789	23.789	23.813	-0.013048	327	43	1.425088	0.024948835	1.4235686	289.6499	0	5.0708313						41	2	2	NaN	NaN	NaN	0.8439	1	6396	6396		3.1533	0	1	3367.8			28358	13894	16327	16788	22666	22666					0.04512454671339583
VFTTIFSL	8	Unmodified						0	0	0		tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	tr|U7SV24|U7SV24_FUSNUMetal-dependentenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01486PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	927.518596	926.51132	2.0897	0.0019382	-5.8078	-0.0053868	-3.7181	-0.0034486	927.5125155199753	23.803	0.072184	23.803	23.778	23.851	0	333	37	1.4215236	0.021386981	1.4215236	288.92545		4.3468933	0.0066779	-0.00053242	-0.0010225	NaN	3.1533	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3628.3			28359	13894	16327	16788							0.04512454671339583
VFTTSSNIF	9	Unmodified	_VFTTSSNIF_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1015.5094880971001	1	1015.50949	1014.50221	2.3672	0.0024039	1.2583	0.0012778	3.6254	0.0036816	1015.5094023749749	26.432	0.072392	26.421	26.397	26.469	-0.011137	198	52	1.5015416	0.030155301	1.5000222	304.80127	0	6.121277						60	4	2	NaN	NaN	NaN	0.6532	1	8976	8976		3.2116	0.058268	1	4084.5			28360	831	16328	16789	22667	22667					-0.0044593868499305245
VFTTVGGA	8	Unmodified	_VFTTVGGA_					0	0	0			REV__ENST00000472968.1_1_20:36012742-36022397:+|nuORF	REV__ENST00000472968.1_1_20:36012742-36022397:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3984810847002	1	751.398481	750.391205	1.7138	0.0012877	5.5926	0.0042023	7.3064	0.00549	751.4024634579645	30.222	0.14476	30.222	30.198	30.342	0	543	109	1.296287	0.064703345	1.296287	264.37466	0	13.196091						334	7	3	NaN	NaN	NaN	0.78605	1	4061	4061		11.091	0	1	36713	+		28361	11134	16329	16790	22668	22668					0.00602466397583612
VFTTVGGA	8	Unmodified						0	0	0			REV__ENST00000472968.1_1_20:36012742-36022397:+|nuORF	REV__ENST00000472968.1_1_20:36012742-36022397:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.398481	750.391205	1.7138	0.0012877	5.5926	0.0042023	7.3064	0.00549	751.4024634579645	30.222	0.14476	30.222	30.198	30.342	0	543	109	1.296287	0.064703345	1.296287	264.37466		13.196091	0.0036873	7.0076E-05	-0.00013812	NaN	11.091	334	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36713	+		28362	11134	16329	16790							0.00602466397583612
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5451453219002	1	1016.54515	1015.53787	2.2376	0.0022746	0.34092	0.00034656	2.5785	0.0026212	1016.5455367167991	33.6	0.36186	33.6	33.552	33.914	0	138	277	1.5369828	0.163203	1.5369828	311.99127	0	33.12851						1940	16	5	NaN	NaN	NaN	0.00080915	1	9206	9206		114.61	52.631	1	1518600			28363	2016	16330	16791	22669	22669					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5451453219002	1	1016.54515	1015.53787	1.6672	0.0016948	0.14234	0.0001447	1.8096	0.0018395	1016.5453232883967	34.588	0.28931	34.587	34.346	34.636	-0.0006485	138	76	1.5369828	0.044256806	1.5354633	311.99127	0	8.983643						359	13	2	NaN	NaN	NaN	0.020004	1	9032	9032		71.993	24.953	1	65846			28364	2016	16330	16791	22670	22670					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5451453219002	1	1016.54515	1015.53787	1.9714	0.002004	0.59027	0.00060004	2.5617	0.0026041	1016.5454894063005	33.599	0.36201	33.597	33.525	33.887	-0.0018501	135	271	1.5387528	0.15963817	1.5372335	312.35056	0	32.404877						1764	16	6	NaN	NaN	NaN	0.00011853	1	9033	9033		121.78	59.806	1	1467200			28365	2016	16330	16791	22671	22671					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-5|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-5|RTN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5451453219002	1	1016.54515	1015.53787	1.0626	0.0010802	1.5367	0.0015622	2.5994	0.0026424	1016.5460827951113	42.624	0.11996	42.634	42.562	42.682	0.0097351	144	58	1.533442	0.033642292	1.5319226	311.27252	0	6.8290405						135	6	3	NaN	NaN	NaN	0.020004	1	9034	9034		71.993	33.075	1	11845			28366	2016	16330	16791	22672	22672					0.030721435626787752
VFVCSDAVET	10	Unmodified	_VFVCSDAVET_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|46|1|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|46|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.24715728105	2	535.247157	1068.47976	1.9921	0.0010663	-10.628	-0.0056886	-8.6359	-0.0046223	535.240551343432	21.705	0.14442	21.705	21.705	21.85	0	1278	34	0.85049206	0.020281553	0.85049206	345.04843	0	8.2283325						66	7	2	NaN	NaN	NaN	0.68669	1	11470	11470		8.962	1.4216	1	6774.5	+		28367	13010	16331	16792	22673	22673					-0.05173906144932516
VFVDSLYVIY	10	Unmodified	_VFVDSLYVIY_					0	0	0			REV__ENST00000356577.8_2_21:34948883-34949093:+|nuORF	REV__ENST00000356577.8_2_21:34948883-34949093:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.55326874340005	3	406.553269	1216.63798	1.9864	0.00080759	4.8301	0.0019637	6.8165	0.0027713	406.5553354048716	16.107	0.11991	16.094	16.047	16.166	-0.012611	1491	40	0.7190863	0.02414906	0.71756685	436.92178	0	14.673126						116	6	3	NaN	NaN	NaN	0.71736	1	16235	16235		3.261	0	1	9456.5	+		28368	11818	16332	16793	22674	22674					0.03832336105824652
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.514239124	1	1038.51424	1037.50696	1.7969	0.0018661	0.36721	0.00038135	2.1641	0.0022475	1038.5144732863964	29.184	0.26543	29.184	29.112	29.377	0	174	148	1.5157272	0.0868907	1.5157272	307.5893	0	17.632874						802	12	4	NaN	NaN	NaN	0.00050979	1	10101	10101		115.51	65.676	1	280710			28369	1466	16333	16794	22675	22675					-0.010290545422321884
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.514239124	1	1038.51424	1037.50696	1.4964	0.0015541	0.28472	0.00029568	1.7812	0.0018498	1038.514872891833	29.183	0.26548	29.175	29.127	29.393	-0.0077209	171	151	1.5174994	0.08867812	1.51598	307.94897	0	17.995605						817	12	5	NaN	NaN	NaN	0.012648	1	9891	9891		84.879	45.42	1	277870			28370	1466	16333	16794	22676	22676					-0.010290545422321884
VFVGRDWLF	9	Unmodified	_VFVGRDWLF_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.80583400095	2	569.805834	1137.59712	1.5916	0.00090692	-3.8517	-0.0021947	-2.2601	-0.0012878	569.8054301841653	29.594	0.21718	29.594	29.522	29.739	0	1221	55	0.885486	0.0331074	0.885486	358.96768	0	13.421448						208	10	3	NaN	NaN	NaN	0.27507	1	14374	14374		20.513	5.3379	1	19801			28371	1995	16334	16795	22677	22677					0.0338203957683163
VFVGRDWLF	9	Unmodified	_VFVGRDWLF_					0	0	0		TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.80583400095	2	569.805834	1137.59712	0.88239	0.00050279	-2.5808	-0.0014706	-1.6984	-0.00096778	569.8041240510889	29.618	0.14477	29.61	29.562	29.707	-0.0070648	1218	40	0.8873258	0.023914814	0.8858064	359.7135	0	9.694855						136	7	2	NaN	NaN	NaN	0.3106	1	13906	13906		18.233	6.1848	1	17037			28372	1995	16334	16795	22678	22678					0.0338203957683163
VFVGTGDLF	9	Unmodified	_VFVGTGDLF_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK;ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-2|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.4931097514002	1	954.49311	953.485833	1.2304	0.0011744	0.57623	0.00055001	1.8066	0.0017244	954.4939354649963	30.124	0.096535	30.118	30.094	30.19	-0.0064106	276	58	1.4553556	0.033796072	1.4538362	295.67923	0	6.8662415						140	5	3	NaN	NaN	NaN	0.17818	1	7021	7021		26.732	2.8811	1	12156			28373	4051	16335	16796	22679	22679					0.007229801489188503
VFVNIQYTL	9	Unmodified	_VFVNIQYTL_					0	0	0		BACH1-DSCR3|1|fusion;ENSG00000157538|ENST00000309117|VPS26C;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF	BACH1-DSCR3|1|fusion	BACH1-DSCR3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.8054996499501	2	548.8055	1095.59645	1.6612	0.00091166	-0.76239	-0.0004184	0.89879	0.00049326	548.8051067774153	30.053	0.096584	30.053	30.029	30.125	0	1209	61	0.892844	0.036793947	0.892844	362.11664	0	14.92276						186	5	3	NaN	NaN	NaN	0.021105	1	12662	12662		70.6	12.364	1	25010			28374	58	16336	16797	22680	22680					0.052472001371370425
VFVNIQYTL	9	Unmodified	_VFVNIQYTL_					0	0	0		BACH1-DSCR3|1|fusion;ENSG00000157538|ENST00000309117|VPS26C;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF	BACH1-DSCR3|1|fusion	BACH1-DSCR3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.8054996499501	2	548.8055	1095.59645	1.0059	0.00055207	-1.3725	-0.00075321	-0.3665	-0.00020114	548.8049279560511	30.052	0.12066	30.045	29.997	30.118	-0.0064106	1206	67	0.894683	0.04046899	0.89316356	362.8625	0	16.413269						184	6	3	NaN	NaN	NaN	0.29681	1	12338	12338		19.118	0	1	23854			28375	58	16336	16797	22681	22681					0.052472001371370425
VFVQGPAWQF	10	Unmodified	_VFVQGPAWQF_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.803291312	2	589.803291	1177.59203	1.1494	0.00067794	-1.0108	-0.00059618	0.13862	8.176E-05	589.8025176439706	30.704	0.28957	30.704	30.632	30.922	0	1221	82	0.885486	0.04964775	0.885486	358.82166	0	20.1185						313	13	4	NaN	NaN	NaN	0.10964	1	15750	15750		44.638	25.475	1	43799			28376	2871	16337	16798	22682	22682					0.010337357142361725
VFVQGPAWQF	10	Unmodified	_VFVQGPAWQF_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.803291312	2	589.803291	1177.59203	0.87226	0.00051446	-0.49577	-0.00029241	0.37649	0.00022205	589.803076378148	30.703	0.24131	30.698	30.649	30.891	-0.0057564	1218	94	0.8873258	0.056984484	0.8858064	359.56717	0	23.091583						284	11	3	NaN	NaN	NaN	0.15427	1	15177	15177		39.459	27.41	1	42952			28377	2871	16337	16798	22683	22683					0.010337357142361725
VFVTEEERDK	10	Unmodified	_VFVTEEERDK_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3144171043001	2	626.314417	1250.61428	1.3811	0.00086499	-8.7211	-0.0054621	-7.34	-0.0045971	626.3088131837337	21.296	0.12039	21.296	21.224	21.344	0	1131	58	0.94059354	0.034854412	0.94059354	380.89487	0	14.114349						106	6	2	NaN	NaN	NaN	0.65442	1	17784	17784		11.17	0.56537	1	11566			28378	7911	16338	16799	22684	22684					-0.0010012939865191584
VFVVCNMKK	9	Unmodified	_VFVVCNMKK_					0	0	0			REV__tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	REV__tr|U7SNJ9|U7SNJ9_FUSNUAldoketomutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01787PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2906479254501	2	534.290648	1066.56674	2.6842	0.0014341	-0.23656	-0.00012639	2.4477	0.0013078	534.2889875831875	18.005	0.072018	18.005	17.933	18.005	0	1293	34	0.84127116	0.020290375	0.84127116	341.31522	0	8.232056						34	4	2	NaN	NaN	NaN	0.62619	1	11416	11416		4.4131	0	1	2130.7	+		28379	13446	16339	16800	22685	22685					0.036122215958130255
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.4931097514001	1	954.49311	953.485833	1.8373	0.0017537	-0.61792	-0.0005898	1.2194	0.0011639	954.4922047725778	28.291	0.16888	28.291	28.267	28.436	0	261	91	1.4642475	0.05336511	1.4642475	297.48575	0	10.8420105						348	8	4	NaN	NaN	NaN	0.098515	1	7164	7164		36.036	7.3698	1	65976			28380	3497	16340	16801	22686	22686					0.007229801489074816
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	954.4931097514001	1	954.49311	953.485833	1.3451	0.0012839	0.47835	0.00045659	1.8234	0.0017405	954.4934416067498	28.314	0.19305	28.305	28.257	28.45	-0.0089779	258	94	1.4660252	0.05514109	1.4645058	297.84695	0	11.20282						355	9	4	NaN	NaN	NaN	0.011118	1	7022	7022		89.521	48.061	1	67460			28381	3497	16340	16801	22687	22687					0.007229801489074816
VFWAVTLM	8	Unmodified	_VFWAVTLM_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.7595065850501	2	483.759507	965.50446	1.5067	0.00072888	-6.2351	-0.0030163	-4.7284	-0.0022874	483.7559817350007	30.511	0.14478	30.511	30.439	30.584	0	1323	43	0.8228144	0.025853395	0.8228144	334.2722	0	10.503082						145	7	3	NaN	NaN	NaN	0.57691	1	7503	7503		26.732	14.144	1	13580	+		28382	10124	16341	16802	22688	22688					0.020328185191260673
VFYASSTIQ	9	Unmodified	_VFYASSTIQ_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.25838228185006	2	508.258382	1014.50221	1.64	0.00083355	2.1337	0.0010845	3.7737	0.001918	508.2568916813133	27.591	0.12063	27.591	27.567	27.688	0	1299	49	0.8375814	0.02951163	0.8375814	340.04047	0	11.98111						94	6	2	NaN	NaN	NaN	0.3389	1	9150	9150		16.417	2.3751	1	6785.9			28383	1604	16342	16803	22689	22689					-0.004459386849816838
VFYLAAREPNE	11	Unmodified	_VFYLAAREPNE_					0	0	0			REV__ENSG00000115363|ENST00000393913|EVA1A	REV__ENSG00000115363|ENST00000393913|EVA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.8909435108333	3	436.890944	1307.651	1.3735	0.00060006	-5.7469	-0.0025108	-4.3734	-0.0019107	437.2235423198293	15.126	0.048054	15.126	15.126	15.174	0	1389	28	0.7821392	0.016658783	0.7821392	474.86258	0	10.114136						38	3	2	NaN	NaN	NaN	0.7782	1	18890	18890		0.55697	0.22246	1	2468.2	+		28384	9187	16343	16804	22690	22690					0.009481672178935696
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.2922250992	2	612.292225	1222.5699	0.9147	0.00056006	-1.8297	-0.0011203	-0.915	-0.00056025	612.291488931637	30.68	0.21723	30.68	30.608	30.825	0	1188	88	0.90571284	0.053267717	0.90571284	366.8617	0	21.576263						635	10	4	NaN	NaN	NaN	0.014943	1	17037	17037		78.398	55.063	1	177710			28385	1417	16344	16805	22691	22691					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.2922250992	2	612.292225	1222.5699	0.9279	0.00056814	-1.6774	-0.001027	-0.74946	-0.00045889	612.2910750321051	30.655	0.33783	30.649	30.577	30.915	-0.0057545	1185	100	0.90755045	0.060615063	0.906031	367.60602	0	24.552307						692	15	4	NaN	NaN	NaN	0.02781	1	16346	16346		61.977	42.858	1	205050			28386	1417	16344	16805	22692	22692					-0.032484887542068464
VGAALGAL	8	Unmodified	_VGAALGAL_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;nc|ENSG00000103855|Q5ZPR3-3|CD276;CD276|p.D524Afs*10|1|0.08|ENSG00000103855|chr15:73711159-73711159|A/-|frameshift_variant;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276;ENSG00000204839|ENST00000398882|MROH6	nc|ENSG00000103855|Q5ZPR3-2|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.4086518405	1	671.408652	670.401375	1.6606	0.0011149	-0.10464	-7.0258E-05	1.5559	0.0010447	671.408510054322	23.923	0.096453	23.91	23.886	23.982	-0.013048	663	43	1.2243022	0.02525127	1.2227827	250.22758	0	5.1609497						79	5	2	NaN	NaN	NaN	0.77734	1	2533	2533		12.26	0	1	6537.7			28387	85	16345	16806	22693	22693					0.052990741228086335
VGAASYFLI	9	Unmodified	_VGAASYFLI_					0	0	0		ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.5138451935001	1	940.513845	939.506569	0.94836	0.00089194	0.23332	0.00021944	1.1817	0.0011114	940.5131385981667	31.887	0.12068	31.887	31.863	31.983	0	282	61	1.4517976	0.0355767	1.4517976	295.01886	0	7.229553						120	6	2	NaN	NaN	NaN	0.3389	1	6815	6815		16.417	2.6796	1	13536			28388	4672	16346	16807	22694	22694					0.03439570528564673
VGAAVIPS	8	Unmodified	_VGAAVIPS_					0	0	0			REV__ENST00000566151.1_1_16:84872069-84872105:+|nuORF	REV__ENST00000566151.1_1_16:84872069-84872105:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.4192165268001	1	713.419217	712.41194	1.2171	0.00086832	4.3387	0.0030953	5.5558	0.0039636	713.4210830399119	24.574	0.096443	24.562	24.514	24.61	-0.012392	606	43	1.2585332	0.02520001	1.2570138	256.92035	0	5.144409						86	5	2	NaN	NaN	NaN	0.84887	1	3408	3408		0.32989	0	1	8077.2	+		28389	12806	16347	16808	22695	22695					0.044230567772387985
VGACTNPP	8	Unmodified	_VGACTNPP_					0	0	0		NPR1|p.D604N|1|0.17|ENSG00000169418|chr1:153686697-153686697|G/A|missense_variant	NPR1|p.D604N|1|0.17|ENSG00000169418|chr1:153686697-153686697|G/A|missense_variant	NPR1|p.D604N|1|0.17|ENSG00000169418|chr1:153686697-153686697|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.3501506836001	1	758.350151	757.342874	1.9868	0.0015067	3.1796	0.0024113	5.1664	0.0039179	758.3529231452976	25.515	0.096497	25.515	25.467	25.564	0	552	43	1.2908988	0.025148988	1.2908988	263.2324	0	5.128235						71	5	2	NaN	NaN	NaN	0.84651	1	4183	4183		1.6704	0	1	5429.5			28390	8078	16348	16809	22696	22696					-0.04550350513977719
VGAEPGGG	8	Unmodified	_VGAEPGGG_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3045806995002	1	643.304581	642.297304	1.0783	0.0006937	4.9835	0.0032059	6.0618	0.0038996	643.3078185588994	33.624	0.14471	33.624	33.576	33.721	0	1305	40	0.83389086	0.023989916	0.83389086	170.58286	0	4.90744						93	7	2	NaN	NaN	NaN	0.84945	1	1783	1783		0	0	1	12428	+		28391	10387	16349	16810	22697	22697					-0.038152527046918294
VGAEPGGG	8	Unmodified	_VGAEPGGG_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.3045806995002	1	643.304581	642.297304	1.273	0.00081895	3.4965	0.0022493	4.7695	0.0030682	643.3068896980942	33.623	0.19304	33.621	33.573	33.766	-0.0018501	1302	40	0.8357362	0.023989916	0.8342168	170.96034	0	4.907425						109	9	2	NaN	NaN	NaN	0.84945	1	1689	1689		0	0	1	12017	+		28392	10387	16349	16810	22698	22698					-0.038152527046918294
VGAEPGGG	8	Unmodified						0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	643.304581	642.297304	1.0783	0.0006937	4.9835	0.0032059	6.0618	0.0038996	643.3078185588994	33.624	0.14471	33.624	33.576	33.721	0	1305	40	0.83389086	0.023989916	0.83389086	170.58286		4.90744	0.0015294	0.00036117	-0.00016297	NaN	0	93	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12428	+		28393	10387	16349	16810							-0.038152527046918294
VGAEPGGG	8	Unmodified						0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	643.304581	642.297304	1.273	0.00081895	3.4965	0.0022493	4.7695	0.0030682	643.3068896980942	33.623	0.19304	33.621	33.573	33.766	-0.0018501	1302	40	0.8357362	0.023989916	0.8342168	170.96034		4.907425	-0.0015294	-0.00059545	0.00016297	NaN	0	109	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12017	+		28394	10387	16349	16810							-0.038152527046918294
VGAFAAAL	8	Unmodified	_VGAFAAAL_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.4086518405	1	719.408652	718.401375	1.1464	0.00082471	-0.55094	-0.00039635	0.59543	0.00042836	719.4074791008783	27.036	0.096571	27.036	27.012	27.109	0	681	31	1.2134778	0.01804626	1.2134778	247.68365	0	3.6834412						62	5	2	NaN	NaN	NaN	0.84651	1	3570	3570		1.6704	0	1	3841.8	+		28395	13399	16350	16811	22699	22699					0.03091074122801274
VGAGGEGH	8	Unmodified	_VGAGGEGH_					0	0	0		ENST00000559000.5_1_15:57210403-57210766:-|nuORF	ENST00000559000.5_1_15:57210403-57210766:-|nuORF	ENST00000559000.5_1_15:57210403-57210766:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3107287099001	1	683.310729	682.303452	1.8705	0.0012781	-5.5141	-0.0037678	-3.6436	-0.0024897	683.3069453796584	17.354	0.23994	17.34	17.244	17.484	-0.013569	738	73	1.179155	0.04341328	1.1776356	240.91618	0	8.869873						358	11	3	NaN	NaN	NaN	0.8439	1	2798	2798		3.1533	0	1	48900			28396	7587	16351	16812	22700	22700					-0.05040734473186603
VGAGGFLG	8	Unmodified	_VGAGGFLG_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	677.3617016479002	1	677.361702	676.354425	1.781	0.0012064	8.0634	0.0054618	9.8444	0.0066682	677.3670534627969	23.103	0.12055	23.103	23.079	23.2	0	759	85	1.1664921	0.05066502	1.1664921	238.37015	0	10.353302						147	6	2	NaN	NaN	NaN	0.84945	1	2765	2765		0	0	1	11916	+		28397	9087	16352	16813	22701	22701					0.003302145716816085
VGAGGFLG	8	Unmodified	_VGAGGFLG_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.3617016479002	1	677.361702	676.354425	0.85524	0.00057931	8.775	0.0059438	9.6302	0.0065231	677.3675383894648	27.446	0.19304	27.436	27.339	27.532	-0.010126	756	88	1.1683017	0.052471757	1.1667823	238.73993	0	10.722473						246	9	2	NaN	NaN	NaN	0.84876	1	2679	2679		0.39566	0	1	19183	+		28398	9087	16352	16813	22702	22702					0.003302145716816085
VGAGGVGK	8	Unmodified	_VGAGGVGK_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000174775|P01112-2|HRAS;HRAS|p.Q150Pfs*28|1|0.16|ENSG00000174775|chr11:533456-533457|-/CGGGTCTTGGCCGAGGT|frameshift_variant;nc|ENSG00000133703|P01116|KRAS;ENSG00000213281|ENST00000369535|NRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3726006852002	1	644.372601	643.365324	3.3493	0.0021582	-2.5358	-0.001634	0.81349	0.00052419	644.3689457754526	41.833	0.072117	41.842	41.794	41.866	0.0089951	771	25	1.1592519	0.014480352	1.1577325	237.13138	0	2.9620361						21	4	2	NaN	NaN	NaN	0.84887	1	1761	1761		0.32989	0	1	1144			28399	2830	16353	16814	22703	22703					0.02937616945962418
VGAGSGHV	8	Unmodified	_VGAGSGHV_					0	0	0		ENST00000366516.5_1_1:246021923-246027105:-|nuORF	ENST00000366516.5_1_1:246021923-246027105:-|nuORF	ENST00000366516.5_1_1:246021923-246027105:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.3471142162	1	683.347114	682.339838	1.9943	0.0013628	-7.4516	-0.0050921	-5.4574	-0.0037293	683.3410597189934	32.079	0.048294	32.075	32.051	32.099	-0.0037613	705	31	1.1990347	0.01805985	1.1975152	244.9776	0	3.6898346						38	3	2	NaN	NaN	NaN	0.84727	1	2800	2800		1.2418	0	1	2230.6			28400	6614	16354	16815	22704	22704					-0.014038575764857342
VGAKGSGCS	9	Unmodified	_VGAKGSGCS_					0	0	0			REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.3559643430001	1	765.355964	764.348688	1.6285	0.0012464	5.8338	0.0044649	7.4623	0.0057113	765.3602423310318	26.456	0.096512	26.445	26.421	26.517	-0.011137	564	55	1.2837118	0.032348156	1.2821923	261.72418	0	6.595154						145	5	3	NaN	NaN	NaN	0.47587	1	4197	4197		10.605	0	1	13443	+		28401	11809	16355	16816	22705	22705					-0.04291252002303736
VGAKGSGCS	9	Unmodified						0	0	0			REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	765.355964	764.348688	1.8717	0.0014325	5.4497	0.0041709	7.3213	0.0056034	765.361500831203	26.432	0.096546	26.432	26.408	26.505	0	567	64	1.2819146	0.037733436	1.2819146	261.35776		7.693115	-0.0063642	-0.00018763	-0.00013889	NaN	10.605	138	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12671	+		28402	11809	16355	16816							-0.04291252002303736
VGAKGSGCS	9	Unmodified						0	0	0			REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	REV__ENST00000353383.5_2_17:17713852-17714191:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	765.355964	764.348688	1.6285	0.0012464	5.8338	0.0044649	7.4623	0.0057113	765.3602423310318	26.456	0.096512	26.445	26.421	26.517	-0.011137	564	55	1.2837118	0.032348156	1.2821923	261.72418		6.595154	0.0063642	0.00010637	0.00013889	NaN	10.605	145	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13443	+		28403	11809	16355	16816							-0.04291252002303736
VGAMEIVAM	9	Unmodified	_VGAMEIVAM_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4579865735001	1	920.457987	919.45071	0.98403	0.00090576	0.34456	0.00031715	1.3286	0.0012229	920.4577069719893	27.59	0.14479	27.581	27.533	27.677	-0.009552	342	67	1.4161754	0.039230227	1.4146559	287.87076	0	7.974457						167	7	2	NaN	NaN	NaN	0.29681	1	6270	6270		19.118	1.3193	1	26886			28404	3234;675	16356	16817	22706	22706					-0.012237219749067663
VGAMEIVAM	9	Oxidation (M)	_VGAMEIVAM(Oxidation (M))_		VGAMEIVAM(1)		VGAM(-60)EIVAM(60)	0	0	1		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4529011956001	1	936.452901	935.445625	1.7711	0.0016585	1.1026	0.0010325	2.8737	0.002691	936.4525632602391	22.814	0.096287	22.8	22.752	22.848	-0.01354	357	70	1.407258	0.041024446	1.4057386	285.98593	0	8.337067						127	5	2	NaN	NaN	NaN	0.02781	1	6591	6591		61.977	20.192	2	15470			28405	3234;675	16356	16818	22707	22707		69			-0.02468025837526966
VGAMEIVAM	9	Oxidation (M)						0	0	1		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000139697|A3KN83-4|SBNO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.452901	935.445625	1.8147	0.0016994	-1.3827	-0.0012948	0.43207	0.00040461	936.4521829304008	22.79	0.14471	22.79	22.718	22.863	0	360	64	1.405474	0.037461042	1.405474	285.62338		7.612915	-0.0049598	-0.00083536	-0.0001323	NaN	61.977	175	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17461			28406	3234;675	16356	16818				69			-0.02468025837526966
VGAPGEGA	8	Unmodified	_VGAPGEGA_					0	0	0		ENSG00000142409|ENST00000610935|ZNF787	ENSG00000142409|ENST00000610935|ZNF787	ENSG00000142409|ENST00000610935|ZNF787	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.3202307637001	1	657.320231	656.312954	1.4727	0.00096803	8.0535	0.0052938	9.5262	0.0062618	657.3254251223366	25.008	0.024157	24.996	24.972	24.996	-0.012011	705	46	1.1990347	0.027091146	1.1975152	245.16844	0	5.5393677						52	2	2	NaN	NaN	NaN	0.84876	1	2107	2107		0.39566	0	1	7797.9			28407	3371	16357	16819	22708	22708					-0.0289496618765952
VGAPGHKG	8	Unmodified	_VGAPGHKG_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3943987598001	1	722.394399	721.387122	1.1707	0.00084574	-2.4049	-0.0017373	-1.2341	-0.00089154	722.3933895207211	27.253	0.048254	27.253	27.253	27.302	0	576	49	1.2765218	0.028769255	1.2765218	260.53143	0	5.871643						66	3	2	NaN	NaN	NaN	0.84876	1	3626	3626		0.39566	0	1	4958			28408	905	16358	16820	22709	22709					0.015284216945133267
VGAPVSGP	8	Unmodified	_VGAPVSGP_					0	0	0			REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3722663342002	1	683.372266	682.36499	1.5231	0.0010408	7.5689	0.0051724	9.092	0.0062132	683.3778906442927	32.128	0.07238	32.128	32.104	32.177	0	669	34	1.2206948	0.019841313	1.2206948	249.40279	0	4.053833						58	4	2	NaN	NaN	NaN	0.84887	1	2891	2891		0.32989	0	1	2927.6	+		28409	12932	16359	16821	22710	22710					0.011101972261030824
VGAPVSGP	8	Unmodified						0	0	0			REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	683.372266	682.36499	1.5231	0.0010408	7.5689	0.0051724	9.092	0.0062132	683.3778906442927	32.128	0.07238	32.128	32.104	32.177	0	669	34	1.2206948	0.019841313	1.2206948	249.40279		4.053833	0	0	0	NaN	0.32989	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2927.6	+		28410	12932	16359	16821							0.011101972261030824
VGASPGMF	8	Unmodified	_VGASPGMF_					0	0	0			REV__ENSG00000125816|ENST00000351817|NKX2-4	REV__ENSG00000125816|ENST00000351817|NKX2-4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	765.3599870884001	1	765.359987	764.352711	1.8716	0.0014325	0.19363	0.00014819	2.0653	0.0015807	765.361500831203	26.432	0.096546	26.432	26.408	26.505	0	567	64	1.2819146	0.037733436	1.2819146	261.35776	0	7.693115						138	5	3	NaN	NaN	NaN	0.62311	1	4272	4272		23.85	4.5657	1	12671	+		28411	9403	16360	16822	22711	22711					-0.03889162508596655
VGAVLSLL	8	Unmodified	_VGAVLSLL_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;ENST00000475584.1_1_6:160517487-160533650:+|nuORF	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4974668478002	1	771.497467	770.49019	1.9443	0.0015	-0.98398	-0.00075914	0.96028	0.00074086	771.496042188255	30.101	0.072407	30.101	30.077	30.149	0	510	49	1.316029	0.028698802	1.316029	268.27533	0	5.8503113						97	4	3	NaN	NaN	NaN	0.78605	1	4369	4369		11.091	0	1	8816			28412	5677	16361	16823	22712	22712					0.09576489362484608
VGCAAAAA	8	Unmodified	_VGCAAAAA_					0	0	0		ENST00000260641.9_1_2:65454937-65467014:+|nuORF	ENST00000260641.9_1_2:65454937-65467014:+|nuORF	ENST00000260641.9_1_2:65454937-65467014:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1548743380499	2	317.154874	632.295196	0.89065	0.00028247	-1.0999	-0.00034883	-0.20922	-6.6354E-05	317.15466109377485	39.742	0.072296	39.742	39.694	39.767	0	1482	79	0.72465914	0.048321664	0.72465914	296.564	0	19.775452						136	4	2	NaN	NaN	NaN	0.84876	1	1518	1518		0.39566	0	1	13500			28413	6299	16362	16824	22713	22713					-0.03566004714184601
VGCAAAAA	8	Unmodified						0	0	0		ENST00000260641.9_1_2:65454937-65467014:+|nuORF	ENST00000260641.9_1_2:65454937-65467014:+|nuORF	ENST00000260641.9_1_2:65454937-65467014:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	317.154874	632.295196	1.4386	0.00045626	2.1471	0.00068095	3.5857	0.0011372	317.15582382873026	39.933	0.12056	39.939	39.867	39.988	0.0060501	1488	133	0.7209441	0.08181071	0.71942466	295.0436		33.480713	0.098434	0.0010854	-0.0026172	NaN	0.39566	294	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33724			28414	6299	16362	16824							-0.03566004714184601
VGCAGAVG	8	Unmodified	_VGCAGAVG_					0	0	0		ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805004	2	317.154874	632.295196	1.6079	0.00050994	-0.1611	-5.1092E-05	1.4468	0.00045885	317.15492841518864	44.568	0.43184	44.568	44.424	44.856	0	1533	112	0.6930556	0.06880653	0.6930556	283.6304	0	28.158813						493	19	2	NaN	NaN	NaN	0.84651	1	1525	1525		1.6704	0	1	60745			28415	7756	16363	16825	22714	22714					-0.035660047141618634
VGCAGAVG	8	Unmodified	_VGCAGAVG_					0	0	0		ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.15487433805004	2	317.154874	632.295196	1.2651	0.00040122	-1.2009	-0.00038087	0.064188	2.0357E-05	317.15470392966716	40.799	0.16806	40.806	40.71	40.878	0.0074959	1536	70	0.69119483	0.042785525	0.6896754	282.86884	0	17.509827						130	5	2	NaN	NaN	NaN	0.84651	1	1446	1446		1.6704	0	1	29696			28416	7756	16363	16825	22715	22715					-0.035660047141618634
VGCAGAVG	8	Unmodified	_VGCAGAVG_					0	0	0		ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.15487433805004	2	317.154874	632.295196	0.58589	0.00018582	1.7967	0.00056984	2.3826	0.00075566	317.1555668904323	44.518	0.28799	44.529	44.433	44.721	0.011646	1533	106	0.6930556	0.065101385	0.6915362	283.63037	0	26.642517						460	13	2	NaN	NaN	NaN	0.84651	1	1449	1449		1.6704	0	1	55530			28417	7756	16363	16825	22716	22716					-0.035660047141618634
VGCAGAVG	8	Unmodified						0	0	0		ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	ENST00000596587.1_1_19:57078454-57078694:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.154874	632.295196	1.01	0.00032033	-0.93655	-0.00029703	0.073454	2.3296E-05	317.1544897815128	40.537	0.096119	40.537	40.488	40.585	0	1539	109	0.68933374	0.066936016	0.68933374	282.1072		27.39331	-0.13479	9.6399E-05	-0.00017081	NaN	1.6704	181	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22807			28418	7756	16363	16825							-0.035660047141618634
VGCSASGT	8	Unmodified	_VGCSASGT_					0	0	0			REV__ENSG00000169085|ENST00000305454|VXN	REV__ENSG00000169085|ENST00000305454|VXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	341.1472462712	2	341.147246	680.27994	1.5813	0.00053946	-2.2059	-0.00075253	-0.62457	-0.00021307	341.1462234487368	28.701	0.096542	28.692	28.644	28.74	-0.0083504	1536	40	0.69119483	0.024191022	0.6896754	282.44785	0	9.885345						92	5	2	NaN	NaN	NaN	0.84455	1	2760	2760		2.7852	0	1	8686.2	+		28419	10535	16364	16826	22717	22717					-0.07298916302022462
VGCSASGT	8	Unmodified						0	0	0			REV__ENSG00000169085|ENST00000305454|VXN	REV__ENSG00000169085|ENST00000305454|VXN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	341.147246	680.27994	1.5813	0.00053946	-2.2059	-0.00075253	-0.62457	-0.00021307	341.1462234487368	28.701	0.096542	28.692	28.644	28.74	-0.0083504	1536	40	0.69119483	0.024191022	0.6896754	282.44785		9.885345	-0.0045432	-0.00045948	0.00017081	NaN	2.7852	92	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8686.2	+		28420	10535	16364	16826							-0.07298916302022462
VGDHGKDEV	9	Unmodified	_VGDHGKDEV_					0	0	0			REV__DLG1-BDH1|1|fusion	REV__DLG1-BDH1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.2276134697	2	478.227613	954.440674	1.8439	0.00088181	0.99872	0.00047761	2.8426	0.0013594	478.228761951286	34.541	0.096546	34.541	34.493	34.589	0	1311	25	0.83019954	0.0147686	0.83019954	337.32727	0	6.0007935						47	5	2	NaN	NaN	NaN	0.62619	1	7186	7186		4.4131	0.83987	1	2605.5	+		28421	8315	16365	16827	22718	22718					-0.03836870384282065
VGDHGKDEV	9	Unmodified						0	0	0			REV__DLG1-BDH1|1|fusion	REV__DLG1-BDH1|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	478.227613	954.440674	1.8439	0.00088181	0.99872	0.00047761	2.8426	0.0013594	478.228761951286	34.541	0.096546	34.541	34.493	34.589	0	1311	25	0.83019954	0.0147686	0.83019954	337.32727		6.0007935	0	0	0	NaN	4.4131	47	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2605.5	+		28422	8315	16365	16827							-0.03836870384282065
VGDNGPTG	8	Unmodified	_VGDNGPTG_					0	0	0			REV__LMBRD1-COL19A1|1|fusion	REV__LMBRD1-COL19A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.66411775589995	2	358.664118	715.313683	0.65482	0.00023486	-1.7013	-0.0006102	-1.0465	-0.00037534	358.6635223998117	53.624	0.088833	53.623	53.623	53.712	-0.00059128	1518	28	0.7023569	0.016738534	0.70083743	286.7325	0	6.8334045						47	4	2	NaN	NaN	NaN	0.84727	1	3445	3445		1.2418	0	1	3140.3	+		28423	8669	16366	16828	22719	22719					-0.05536171538619783
VGDPEEYSL	9	Unmodified	_VGDPEEYSL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.4520327977001	1	1008.45203	1007.44476	1.7726	0.0017876	1.4227	0.0014347	3.1953	0.0032223	1008.4538620936502	22.212	0.14474	22.212	22.163	22.308	0	276	76	1.4553556	0.044454455	1.4553556	295.4536	0	9.02475						198	7	3	NaN	NaN	NaN	0.056143	1	8866	8866		44.302	19.341	1	17697			28424	2784	16367	16829	22720	22720					-0.05866825681221144
VGDPEEYSL	9	Unmodified	_VGDPEEYSL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.4520327977001	1	1008.45203	1007.44476	1.3325	0.0013438	1.4011	0.0014129	2.7336	0.0027567	1008.4542684837253	22.211	0.14477	22.197	22.149	22.294	-0.013731	276	70	1.4553556	0.040902376	1.4538362	295.4536	0	8.30365						184	7	3	NaN	NaN	NaN	0.12945	1	8694	8694		31.561	11.006	1	18324			28425	2784	16367	16829	22721	22721					-0.05866825681221144
VGDTGKKT	8	Unmodified	_VGDTGKKT_					0	0	0			REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4414085319	1	805.441409	804.434132	2.074	0.0016705	-11.03	-0.0088838	-8.9557	-0.0072133	805.4326291814081	53.731	0.25011	53.731	53.626	53.876	0	492	103	1.3267875	0.060932875	1.3267875	270.26877	0	12.41214						257	10	2	NaN	NaN	NaN	0.84782	1	4799	4799		0.92586	0	1	37966	+		28426	9205	16368	16830	22722	22722					0.024092364550028833
VGDTGKKT	8	Unmodified						0	0	0			REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	805.441409	804.434132	2.074	0.0016705	-11.03	-0.0088838	-8.9557	-0.0072133	805.4326291814081	53.731	0.25011	53.731	53.626	53.876	0	492	103	1.3267875	0.060932875	1.3267875	270.26877		12.41214	0.0094795	-0.00098951	-0.0010326	NaN	0.92586	257	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37966	+		28427	9205	16368	16830							0.024092364550028833
VGDTGKKT	8	Unmodified						0	0	0			REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	REV__ENST00000464147.1_1_2:201776026-201778173:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	805.441409	804.434132	-0.20163	-0.0001624	-8.3344	-0.0067128	-8.536	-0.0068752	805.4351182043715	53.713	0.20194	53.712	53.647	53.849	-0.00059128	486	67	1.3303722	0.039418697	1.3288528	270.99896		8.029663	-0.0094795	0.0011814	0.0010326	NaN	0.92586	228	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31497	+		28428	9205	16368	16830							0.024092364550028833
VGEILLLIL	9	Unmodified	_VGEILLLIL_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.6546957713002	1	982.654696	981.647419	1.9698	0.0019356	-0.65297	-0.00064165	1.3168	0.001294	982.653358856895	38.225	0.096127	38.228	38.156	38.252	0.0034256	186	46	1.5086359	0.026599169	1.5071164	306.37875	0	5.401825						100	5	2	NaN	NaN	NaN	0.03623	1	7787	7787		52.758	0	1	8012.5			28429	3129	16369	16831	22723	22723					0.15586149182001918
VGETKNIA	8	Unmodified	_VGETKNIA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF;ENSG00000118298|ENST00000369111|CA14	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.23216753135	2	416.232168	830.449782	-0.5275	-0.00021956	0.24358	0.00010138	-0.28393	-0.00011818	416.2321687146927	54.522	0.14464	54.521	54.497	54.642	-0.0006218	1380	58	0.7876915	0.03516102	0.78617203	320.7329	0	14.316895						254	7	4	NaN	NaN	NaN	0.8439	1	5025	5025		3.1533	0	1	88643			28430	2173	16370	16832	22724	22724					0.027775229720418793
VGFFLVFVHL	10	Unmodified	_VGFFLVFVHL_					0	0	0			REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3420523317501	2	589.342052	1176.66955	0.98744	0.00058194	-0.76036	-0.00044811	0.22709	0.00013383	589.3415881253193	31.114	0.3379	31.109	30.94	31.277	-0.0050716	1095	73	0.9625867	0.043948352	0.96106726	390.06836	0	17.809174						433	15	2	NaN	NaN	NaN	0.772	1	15153	15153		2.4615	0.28518	1	65058	+		28431	11929	16371	16833	22725	22725					0.08828373650408139
VGFFLVFVHL	10	Unmodified						0	0	0			REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.342052	1176.66955	0.96784	0.00057039	-1.015	-0.00059818	-0.047159	-2.7793E-05	589.3412186613615	31.115	0.33788	31.115	30.97	31.308	0	1095	85	0.9625867	0.051267564	0.9625867	390.06836		20.775116	0.0030384	-0.00014466	0.00075972	NaN	2.4615	475	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56457	+		28432	11929	16371	16833							0.08828373650408139
VGFFLVFVHL	10	Unmodified						0	0	0			REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	REV__ENST00000374379.8_1_1:25168644-25168725:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	589.342052	1176.66955	0.98744	0.00058194	-0.76036	-0.00044811	0.22709	0.00013383	589.3415881253193	31.114	0.3379	31.109	30.94	31.277	-0.0050716	1095	73	0.9625867	0.043948352	0.96106726	390.06836		17.809174	-0.0030384	0.00015547	-0.00075972	NaN	2.4615	433	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65058	+		28433	11929	16371	16833							0.08828373650408139
VGFGFCLV	8	Unmodified	_VGFGFCLV_					0	0	0			REV__ENST00000406606.7_3_9:136627407-136627686:-|nuORF	REV__ENST00000406606.7_3_9:136627407-136627686:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.4276727230999	1	841.427673	840.420396	1.1799	0.00099279	-8.494	-0.0071471	-7.3141	-0.0061543	841.420495911045	24.26	0.072412	24.248	24.224	24.296	-0.012749	414	64	1.3733286	0.0375489	1.3718091	279.54813	0	7.6432495						91	4	3	NaN	NaN	NaN	0.83849	1	5140	5140		4.0537	0	1	10364	+		28434	12050	16372	16834	22726	22726					-0.00619712577804421
VGFGTLTLQQ	10	Unmodified	_VGFGTLTLQQ_					0	0	0			REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2927564154501	2	532.292756	1062.57096	2.4044	0.0012798	4.2837	0.0022802	6.6881	0.00356	532.297576819044	18.364	0.14398	18.364	18.34	18.484	0	1275	76	0.85233563	0.046064615	0.85233563	345.8208	0	18.689941						179	7	3	NaN	NaN	NaN	0.47601	1	11247	11247		20.449	2.479	1	18156	+		28435	12918	16373	16835	22727	22727					0.04217725614716983
VGFGTLTLQQ	10	Unmodified						0	0	0			REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	532.292756	1062.57096	2.4044	0.0012798	4.2837	0.0022802	6.6881	0.00356	532.297576819044	18.364	0.14398	18.364	18.34	18.484	0	1275	76	0.85233563	0.046064615	0.85233563	345.8208		18.689941	0.044425	-0.00082723	0.0044475	NaN	20.449	179	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18156	+		28436	12918	16373	16835							0.04217725614716983
VGFGTLTLQQ	10	Unmodified						0	0	0			REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	REV__ENST00000591340.5_1_19:37039208-37045651:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	532.292756	1062.57096	2.8489	0.0015164	5.7753	0.0030741	8.6242	0.0045906	532.2966550976292	18.29	0.047922	18.276	18.252	18.3	-0.01395	1287	37	0.8449601	0.022126555	0.84344065	342.8283		8.977478	-0.044425	0.00076071	-0.0044475	NaN	20.449	30	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2033.7	+		28437	12918	16373	16835							0.04217725614716983
VGFHIAEP	8	Unmodified	_VGFHIAEP_					0	0	0			REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	869.4515792876999	1	869.451579	868.444303	1.5602	0.0013565	-10.451	-0.0090862	-8.8904	-0.0077297	869.4423150328225	25.033	0.1206	25.021	24.996	25.117	-0.012011	1212	64	0.8910048	0.03861493	0.88948536	181.27443	0	7.8561707						105	6	2	NaN	NaN	NaN	0.84876	1	5502	5502		0.39566	0	1	6561.3	+		28438	9662	16374	16836	22728	22728					0.004818441802171947
VGFYGSSFHF	10	Unmodified	_VGFYGSSFHF_					0	0	0		nc|ENSG00000120341|Q96JE7-2|SEC16B	nc|ENSG00000120341|Q96JE7-2|SEC16B	nc|ENSG00000120341|Q96JE7-2|SEC16B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.263998976	2	574.263999	1146.51345	2.1763	0.0012498	-5.2396	-0.0030089	-3.0634	-0.0017592	574.260687134739	19.66	0.21613	19.66	19.588	19.804	0	1203	106	0.8965218	0.0643999	0.8965218	363.40765	0	26.104675						743	10	5	NaN	NaN	NaN	0.53991	1	14673	14673		17.799	1.2148	1	275880			28439	7934	16375	16837	22729	22729					-0.05395116590875659
VGGAAGAEL	9	Unmodified	_VGGAAGAEL_					0	0	0			REV__ENSG00000189401|ENST00000338352|OTUD6A	REV__ENSG00000189401|ENST00000338352|OTUD6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.3886446799	1	744.388645	743.381368	1.6608	0.0012363	4.6608	0.0034695	6.3216	0.0047057	744.3926791515034	26.529	0.21721	26.529	26.481	26.698	0	570	55	1.2801172	0.032358527	1.2801172	261.12106	0	6.6005554						250	10	3	NaN	NaN	NaN	0.3389	1	3965	3965		16.417	1.2413	1	31175	+		28440	11085	16376	16838	22730	22730					-0.0005872160780882041
VGGAAGAEL	9	Unmodified						0	0	0			REV__ENSG00000189401|ENST00000338352|OTUD6A	REV__ENSG00000189401|ENST00000338352|OTUD6A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	744.388645	743.381368	1.6608	0.0012363	4.6608	0.0034695	6.3216	0.0047057	744.3926791515034	26.529	0.21721	26.529	26.481	26.698	0	570	55	1.2801172	0.032358527	1.2801172	261.12106		6.6005554	0.0054698	-9.5763E-05	0.00075972	NaN	16.417	250	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31175	+		28441	11085	16376	16838							-0.0005872160780882041
VGGAGGLA	8	Unmodified	_VGGAGGLA_					0	0	0			REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	301.1688389930499	2	301.168839	600.323125	1.0263	0.0003091	-10.516	-0.003167	-9.4894	-0.0028579	301.16572753443944	37.506	0.14453	37.506	37.458	37.602	0	1509	97	0.70793515	0.059550405	0.70793515	290.04486	0	24.398132						180	7	2	NaN	NaN	NaN	0.84945	1	627	627		0	0	1	16098	+		28442	12487	16377	16839	22731	22731					0.006976415375561373
VGGAGGLA	8	Unmodified	_VGGAGGLA_					0	0	0			REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	301.1688389930499	2	301.168839	600.323125	0.96025	0.0002892	-10.007	-0.0030137	-9.0463	-0.0027245	301.16586018836125	35.048	0.14479	35.048	34.999	35.144	0	1548	94	0.6837494	0.05768007	0.6837494	280.13583	0	23.631805						251	7	3	NaN	NaN	NaN	0.84945	1	628	628		0	0	1	19001	+		28443	12487	16377	16839	22732	22732					0.006976415375561373
VGGAGGLA	8	Unmodified						0	0	0			REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	301.168839	600.323125	1.0263	0.0003091	-10.516	-0.003167	-9.4894	-0.0028579	301.16572753443944	37.506	0.14453	37.506	37.458	37.602	0	1509	97	0.70793515	0.059550405	0.70793515	290.04486		24.398132	-0.00015833	0.00021741	0.0016893	NaN	0	180	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16098	+		28444	12487	16377	16839							0.006976415375561373
VGGAGGLA	8	Unmodified						0	0	0			REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	REV__nc|ENSG00000168071|A6NC98-3|CCDC88B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	301.168839	600.323125	1.4843	0.00044702	-11.64	-0.0035057	-10.156	-0.0030587	301.1654873578134	37.504	0.09639	37.506	37.458	37.555	0.0028229	1512	100	0.7060759	0.06141466	0.70455647	289.28314		25.161926	0.00015833	-0.00046005	-0.0016893	NaN	0	163	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11323	+		28445	12487	16377	16839							0.006976415375561373
VGGAGPHA	8	Unmodified	_VGGAGPHA_					0	0	0			REV__ENST00000596657.1_1_19:6373528-6374597:+|nuORF	REV__ENST00000596657.1_1_19:6373528-6374597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	333.1719129982499	2	333.171913	664.329273	0.7705	0.00025671	7.0908	0.0023624	7.8613	0.0026192	333.17426484797244	35.241	0.1689	35.241	35.168	35.337	0	1518	58	0.7023569	0.035340786	0.7023569	287.14444	0	14.448364						186	8	2	NaN	NaN	NaN	0.84651	1	2434	2434		1.6704	1.2747	1	22638	+		28446	11499	16378	16840	22733	22733					-0.016318402309252633
VGGAGPHA	8	Unmodified						0	0	0			REV__ENST00000596657.1_1_19:6373528-6374597:+|nuORF	REV__ENST00000596657.1_1_19:6373528-6374597:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	333.171913	664.329273	0.7705	0.00025671	7.0908	0.0023624	7.8613	0.0026192	333.17426484797244	35.241	0.1689	35.241	35.168	35.337	0	1518	58	0.7023569	0.035340786	0.7023569	287.14444		14.448364	0.00072452	0.00032189	-0.0001701	NaN	1.6704	186	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22638	+		28447	11499	16378	16840							-0.016318402309252633
VGGAGPPN	8	Unmodified	_VGGAGPPN_					0	0	0		nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1	nc|ENSG00000160691|P29353|SHC1	nc|ENSG00000160691|P29353|SHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3362151788999	1	668.336215	667.328939	1.5984	0.0010683	5.2016	0.0034764	6.8	0.0045447	668.339990476071	22.886	0.14472	22.872	22.848	22.993	-0.01354	711	49	1.1954219	0.028908134	1.1939025	244.3474	0	5.90889						156	7	2	NaN	NaN	NaN	0.84651	1	2439	2439		1.6704	0.2308	1	13407			28448	4068	16379	16841	22734	22734					-0.018032599507705527
VGGAGPPP	8	Unmodified	_VGGAGPPP_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3460515836999	1	651.346052	650.338775	0.7041	0.00045861	-2.7114	-0.001766	-2.0073	-0.0013074	651.3448251762331	35.023	0.12064	35.023	34.999	35.12	0	792	61	1.1465741	0.03622818	1.1465741	234.48576	0	7.409012						176	6	3	NaN	NaN	NaN	0.84945	1	2067	2067		0	0	1	21082			28449	1150	16380	16842	22735	22735					-0.000380719453914935
VGGAGPPP	8	Unmodified	_VGGAGPPP_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.3460515836999	1	651.346052	650.338775	0.49123	0.00031996	-1.453	-0.00094639	-0.96174	-0.00062643	651.3458586548325	35.241	0.07238	35.241	35.192	35.265	0	759	58	1.1664921	0.03439641	1.1664921	238.55917	0	7.0344086						71	4	2	NaN	NaN	NaN	0.84945	1	2068	2068		0	0	1	8428.7			28450	1150	16380	16842	22736	22736					-0.000380719453914935
VGGAGPPP	8	Unmodified	_VGGAGPPP_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3460515836999	1	651.346052	650.338775	0.76243	0.00049661	-3.2207	-0.0020978	-2.4582	-0.0016012	651.3444100583389	37.504	0.1926	37.506	37.41	37.603	0.0028229	726	79	1.1863867	0.0470109	1.1848673	242.6278	0	9.614197						226	9	3	NaN	NaN	NaN	0.84945	1	1979	1979		0	0	1	27965			28451	1150	16380	16842	22737	22737					-0.000380719453914935
VGGAGPPP	8	Unmodified	_VGGAGPPP_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3460515836999	1	651.346052	650.338775	0.67143	0.00043734	-2.4337	-0.0015852	-1.7623	-0.0011479	651.3449907365455	35.239	0.14484	35.239	35.191	35.336	-4.1962E-05	759	64	1.1664921	0.03800893	1.1649727	238.55919	0	7.7732086						113	7	2	NaN	NaN	NaN	0.84945	1	1980	1980		0	0	1	12438			28452	1150	16380	16842	22738	22738					-0.000380719453914935
VGGAGPPP	8	Unmodified	_VGGAGPPP_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3460515836999	1	651.346052	650.338775	0.76807	0.00050028	-1.6312	-0.0010625	-0.8631	-0.00056217	651.3451415452507	35.07	0.12063	35.07	35.022	35.143	-4.5776E-05	789	61	1.1483859	0.036231995	1.1468664	234.85626	0	7.4098053						155	6	3	NaN	NaN	NaN	0.84945	1	1981	1981		0	0	1	17856			28453	1150	16380	16842	22739	22739					-0.000380719453914935
VGGAGSSR	8	Unmodified	_VGGAGSSR_					0	0	0		ENST00000539719.5_1_1:33765092-33765314:+|nuORF	ENST00000539719.5_1_1:33765092-33765314:+|nuORF	ENST00000539719.5_1_1:33765092-33765314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3529278756	1	690.352928	689.345651	2.0988	0.0014489	-6.8883	-0.0047554	-4.7895	-0.0033065	690.3488442338321	25.491	0.072374	25.491	25.467	25.539	0	654	43	1.2297117	0.025245905	1.2297117	251.19508	0	5.157028						74	4	2	NaN	NaN	NaN	0.84692	1	3007	3007		1.4396	0	1	5663.5			28454	7491	16381	16843	22740	22740					-0.011447590648117512
VGGCADDG	8	Unmodified	_VGGCADDG_					0	0	0		ENST00000477184.5_1_7:102123232-102123718:-|nuORF;ENST00000446874.5_1_7:44068127-44068763:-|nuORF	ENST00000477184.5_1_7:102123232-102123718:-|nuORF	ENST00000477184.5_1_7:102123232-102123718:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.2508305695	1	693.250831	692.243554	2.3683	0.0016418	0.40425	0.00028024	2.7725	0.001922	693.2517845590451	26.022	0.84461	26.011	25.769	26.614	-0.011135	747	184	1.1737292	0.11047828	1.1722097	239.73988	0	22.565735						2457	36	4	NaN	NaN	NaN	0.84692	1	3016	3016		1.4396	1.1097	1	550470			28455	7026	16382	16844	22741	22741					-0.11487793198739382
VGGCHQHG	8	Unmodified	_VGGCHQHG_					0	0	0		ENST00000537109.1_1_11:63999804-63999876:+|nuORF	ENST00000537109.1_1_11:63999804-63999876:+|nuORF	ENST00000537109.1_1_11:63999804-63999876:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.67175421025	2	397.671754	793.328955	1.1124	0.00044237	-0.60194	-0.00023938	0.51046	0.000203	397.67158157136566	30.824	0.14478	30.818	30.746	30.891	-0.0057564	1329	58	0.81912065	0.035092473	0.8176012	333.78357	0	14.299866						140	7	2	NaN	NaN	NaN	0.84876	1	4578	4578		0.39566	0	1	10661			28456	7475	16383	16845	22742	22742					-0.07597583222411686
VGGFGLSI	8	Unmodified	_VGGFGLSI_					0	0	0		ENSG00000147481|ENST00000642720|SNTG1;nc|ENSG00000147481|Q9NSN8-2|SNTG1	ENSG00000147481|ENST00000642720|SNTG1	ENSG00000147481|ENST00000642720|SNTG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	375.21324649670004	2	375.213246	748.41194	1.9551	0.00073358	-6.4209	-0.0024092	-4.4658	-0.0016756	375.2100670412733	29.4	0.096502	29.393	29.344	29.441	-0.0077209	1443	34	0.7487872	0.020400584	0.7472678	305.43396	0	8.321503						57	5	2	NaN	NaN	NaN	0.84207	1	3954	3954		3.5732	0	1	3319			28457	3600	16384	16846	22743	22743					0.027670567772474897
VGGFSSGG	8	Unmodified	_VGGFSSGG_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24	REV__ENSG00000167916|ENST00000264651|KRT24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	667.3045806995002	1	667.304581	666.297304	0.61951	0.0004134	5.0727	0.003385	5.6922	0.0037984	667.30786555001	35.217	0.07238	35.217	35.192	35.265	0	744	55	1.1755381	0.0325495	1.1755381	240.29056	0	6.653412						94	4	2	NaN	NaN	NaN	0.84887	1	2477	2477		0.32989	0	1	8105.2	+	+	28458	8275	16385	16847	22744	22744					-0.04919252704689825
VGGFSSGG	8	Unmodified						0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24	REV__ENSG00000167916|ENST00000264651|KRT24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	667.304581	666.297304	0.61951	0.0004134	5.0727	0.003385	5.6922	0.0037984	667.30786555001	35.217	0.07238	35.217	35.192	35.265	0	744	55	1.1755381	0.0325495	1.1755381	240.29056		6.653412	0	0	0	NaN	0.32989	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8105.2	+	+	28459	8275	16385	16847							-0.04919252704689825
VGGGAKSG	8	Unmodified	_VGGGAKSG_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3362151789001	1	632.336215	631.328939	1.056	0.00066775	4.9537	0.0031324	6.0097	0.0038001	632.33910341283	30.825	0.14478	30.825	30.777	30.922	0	1269	43	0.8560222	0.025803149	0.8560222	175.17345	0	5.2802734						112	7	2	NaN	NaN	NaN	0.84945	1	1508	1508		0	0	1	13514	+		28460	13035	16386	16848	22745	22745					-0.0014725995075650644
VGGGAKSG	8	Unmodified	_VGGGAKSG_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3362151789001	1	632.336215	631.328939	1.1311	0.00071525	4.9169	0.0031091	6.048	0.0038244	632.3392433069122	30.8	0.14483	30.794	30.77	30.915	-0.0057545	1266	43	0.85786515	0.025800347	0.8563457	175.5506	0	5.2796936						127	7	2	NaN	NaN	NaN	0.84945	1	1432	1432		0	0	1	16440	+		28461	13035	16386	16848	22746	22746					-0.0014725995075650644
VGGGAKSG	8	Unmodified						0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	632.336215	631.328939	1.056	0.00066775	4.9537	0.0031324	6.0097	0.0038001	632.33910341283	30.825	0.14478	30.825	30.777	30.922	0	1269	43	0.8560222	0.025803149	0.8560222	175.17345		5.2802734	0.015495	1.4641E-05	-0.00016177	NaN	0	112	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13514	+		28462	13035	16386	16848							-0.0014725995075650644
VGGGAKSG	8	Unmodified						0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|108|3|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	632.336215	631.328939	1.1311	0.00071525	4.9169	0.0031091	6.048	0.0038244	632.3392433069122	30.8	0.14483	30.794	30.77	30.915	-0.0057545	1266	43	0.85786515	0.025800347	0.8563457	175.5506		5.2796936	-0.015495	-8.6041E-06	0.00016177	NaN	0	127	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16440	+		28463	13035	16386	16848							-0.0014725995075650644
VGGGFALA	8	Unmodified	_VGGGFALA_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	346.1923140893499	2	346.192314	690.370075	1.4512	0.00050241	-4.4467	-0.0015394	-2.9954	-0.001037	346.19110386921403	27.035	0.19309	27.025	26.977	27.17	-0.010124	1467	37	0.7339432	0.022275686	0.7324238	299.83023	0	9.100067						154	9	3	NaN	NaN	NaN	0.84651	1	2977	2977		1.6704	0	1	14330			28464	924	16387	16849	22747	22747					0.012505010886911805
VGGGFGGI	8	Unmodified	_VGGGFGGI_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.3460515836999	1	663.346052	662.338775	0.3424	0.00022713	-9.4334	-0.0062576	-9.091	-0.0060305	663.3388468031726	55.17	0.096134	55.169	55.097	55.193	-0.0006218	708	43	1.1972283	0.025294542	1.1957089	244.75374	0	5.171051						69	5	3	NaN	NaN	NaN	0.84876	1	2291	2291		0.39566	0	1	5596.8			28465	532	16388	16850	22748	22748					-0.005900719453961756
VGGGGGGA	8	Unmodified	_VGGGGGGA_					0	0	0		nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	nc|ENSG00000113389|P17342-2|NPR3	nc|ENSG00000113389|P17342-2|NPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2521511985	1	531.252151	530.244875	1.0037	0.00053321	-5.5849	-0.002967	-4.5812	-0.0024338	531.2497073284337	29.183	0.072443	29.175	29.151	29.224	-0.0077209	1326	43	0.8209676	0.025850594	0.81944823	168.67673	0	5.3112946						67	4	2	NaN	NaN	NaN	0.84651	1	366	366		1.6704	0	1	5577			28466	1913	16389	16851	22749	22749					-0.039037910476736215
VGGGGRPATAA	11	Unmodified	_VGGGGRPATAA_					0	0	0			REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.2461405738499	2	457.246141	912.477728	0.88561	0.00040494	1.369	0.00062598	2.2546	0.0010309	457.2466814719299	14.981	0.12014	14.981	14.933	15.053	0	1461	58	0.7376554	0.03527558	0.7376554	299.9203	0	14.342529						91	6	2	NaN	NaN	NaN	0.70497	1	6279	6279		7.1304	1.4362	1	8822.8	+		28467	12657	16390	16852	22750	22750					0.01798845952123429
VGGGGRPATAA	11	Unmodified						0	0	0			REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.246141	912.477728	0.88561	0.00040494	1.369	0.00062598	2.2546	0.0010309	457.2466814719299	14.981	0.12014	14.981	14.933	15.053	0	1461	58	0.7376554	0.03527558	0.7376554	299.9203		14.342529	-0.1253	-0.00098321	-0.00016818	NaN	7.1304	91	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8822.8	+		28468	12657	16390	16852							0.01798845952123429
VGGGGRPATAA	11	Unmodified						0	0	0			REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	REV__ENST00000533424.5_1_11:67770773-67771486:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	457.246141	912.477728	1.2028	0.00054999	3.1452	0.0014381	4.348	0.0019881	457.2478256214964	15.244	0.16806	15.232	15.16	15.328	-0.012201	1458	43	0.7395112	0.02598548	0.73799175	300.67484		10.565308	0.1253	0.0006411	0.00016818	NaN	7.1304	135	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10406	+		28469	12657	16390	16852							0.01798845952123429
VGGGHAAP	8	Unmodified	_VGGGHAAP_					0	0	0		ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3365495299	1	665.33655	664.329273	1.7297	0.0011508	-0.51021	-0.00033946	1.2195	0.00081135	665.3374501955066	56.78	0.12018	56.78	56.756	56.876	0	585	73	1.2711272	0.04317236	1.2711272	259.84537	0	8.825348						144	6	3	NaN	NaN	NaN	0.84651	1	2433	2433		1.6704	0	1	11243			28470	6731	16391	16853	22751	22751					-0.016318402309138946
VGGGHAAP	8	Unmodified						0	0	0		ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	665.33655	664.329273	-0.036594	-2.4347E-05	2.4519	0.0016314	2.4153	0.001607	665.3376846805662	56.779	0.096146	56.778	56.754	56.85	-0.00056458	585	55	1.2711272	0.032372475	1.2696078	259.84534		6.6176147	-0.0011122	0.000772	-0.00075972	NaN	1.6704	125	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12846			28471	6731	16391	16853							-0.016318402309138946
VGGGIAAK	8	Unmodified	_VGGGIAAK_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.4039008136	1	672.403901	671.396624	1.6008	0.0010764	6.4376	0.0043286	8.0383	0.005405	672.4079593940237	58.485	0.023972	58.485	58.485	58.509	0	684	49	1.2116731	0.028877258	1.2116731	247.63904	0	5.90184						44	2	2	NaN	NaN	NaN	0.84876	1	2634	2634		0.39566	0	1	3879.9	+		28472	8861	16392	16854	22752	22752					0.04778189980038405
VGGGIAAK	8	Unmodified						0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	672.403901	671.396624	1.6008	0.0010764	6.4376	0.0043286	8.0383	0.005405	672.4079593940237	58.485	0.023972	58.485	58.485	58.509	0	684	49	1.2116731	0.028877258	1.2116731	247.63904		5.90184	0.0014558	-0.0024177	-0.00014264	NaN	0.39566	44	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3879.9	+		28473	8861	16392	16854							0.04778189980038405
VGGGIAAK	8	Unmodified						0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	672.403901	671.396624	-0.040556	-2.727E-05	11.385	0.0076556	11.345	0.0076284	672.4111060429861	58.482	0.023964	58.482	58.482	58.506	-0.00048065	681	40	1.2134778	0.023461461	1.2119584	248.00786		4.794998	-0.0014558	0.00090933	0.00014264	NaN	0.39566	43	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3764.3	+		28474	8861	16392	16854							0.04778189980038405
VGGGPGVG	8	Unmodified	_VGGGPGVG_					0	0	0		nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;HDAC5|p.E908K|1|0.13|ENSG00000108840|chr17:44080768-44080768|C/T|missense_variant	nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.4329	0.0004301	4.8364	0.0014517	6.2693	0.0018818	300.1624814641566	39.861	0.14468	39.867	39.843	39.988	0.0060463	1518	55	0.7023569	0.033468008	0.70083743	287.7808	0	13.713013						146	7	2	NaN	NaN	NaN	0.84876	1	575	575		0.39566	0	1	27360			28475	1700	16393	16855	22753	22753					-0.007746449794694854
VGGGQPPP	8	Unmodified	_VGGGQPPP_					0	0	0		SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|20|2|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|20|2|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|20|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073	1	708.367515	707.360239	-0.27699	-0.00019621	-3.877	-0.0027463	-4.154	-0.0029426	708.3658656644016	57.523	0.048031	57.522	57.498	57.546	-0.00053787	492	55	1.3267875	0.03227234	1.325268	270.89047	0	6.5890503						54	3	2	NaN	NaN	NaN	0.84876	1	3293	3293		0.39566	0	1	4834.9			28476	13704	16394	16856	22754	22754					-0.0051468691667651
VGGHSGQW	8	Unmodified	_VGGHSGQW_					0	0	0			REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF	REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.3794769771001	1	827.379477	826.372201	0.85474	0.00070719	-7.9437	-0.0065725	-7.089	-0.0058653	827.3734539380329	33.213	0.096546	33.21	33.162	33.259	-0.0024757	498	52	1.3232021	0.03048098	1.3216827	269.41827	0	6.2062683						117	5	2	NaN	NaN	NaN	0.75561	1	4980	4980		15.175	2.5875	1	13821	+		28477	12443	16395	16857	22755	22755					-0.0479307017346855
VGGHVGSG	8	Unmodified	_VGGHVGSG_					0	0	0			REV__nc|ENSG00000064655|O00167-3|EYA2	REV__nc|ENSG00000064655|O00167-3|EYA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.3314641520002	1	669.331464	668.324188	1.3364	0.0008945	6.4426	0.0043122	7.779	0.0052067	669.3356011627253	26.843	0.072422	26.843	26.819	26.891	0	735	34	1.1809633	0.019890308	1.1809633	241.38478	0	4.0654907						59	4	2	NaN	NaN	NaN	0.84945	1	2556	2556		0	0	1	4374.1	+		28478	8530	16396	16858	22756	22756					-0.02324144093506675
VGGHVGSG	8	Unmodified	_VGGHVGSG_					0	0	0			REV__nc|ENSG00000064655|O00167-3|EYA2	REV__nc|ENSG00000064655|O00167-3|EYA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.3314641520002	1	669.331464	668.324188	1.6558	0.0011083	7.415	0.0049631	9.0708	0.0060714	669.336306859108	26.866	0.072426	26.856	26.808	26.88	-0.010645	729	40	1.184579	0.023504138	1.1830596	242.12384	0	4.8041687						72	4	3	NaN	NaN	NaN	0.84945	1	2464	2464		0	0	1	4197.2	+		28479	8530	16396	16858	22757	22757					-0.02324144093506675
VGGHVGSG	8	Unmodified						0	0	0			REV__nc|ENSG00000064655|O00167-3|EYA2	REV__nc|ENSG00000064655|O00167-3|EYA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.331464	668.324188	1.3364	0.0008945	6.4426	0.0043122	7.779	0.0052067	669.3356011627253	26.843	0.072422	26.843	26.819	26.891	0	735	34	1.1809633	0.019890308	1.1809633	241.38478		4.0654907	-0.0063395	-0.00032946	-0.0010482	NaN	0	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4374.1	+		28480	8530	16396	16858							-0.02324144093506675
VGGHVGSG	8	Unmodified						0	0	0			REV__nc|ENSG00000064655|O00167-3|EYA2	REV__nc|ENSG00000064655|O00167-3|EYA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	669.331464	668.324188	1.6558	0.0011083	7.415	0.0049631	9.0708	0.0060714	669.336306859108	26.866	0.072426	26.856	26.808	26.88	-0.010645	729	40	1.184579	0.023504138	1.1830596	242.12384		4.8041687	0.0063395	0.00032143	0.0010482	NaN	0	72	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4197.2	+		28481	8530	16396	16858							-0.02324144093506675
VGGKARAG	8	Unmodified	_VGGKARAG_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	715.4209478613001	1	715.420948	714.413671	1.686	0.0012062	4.717	0.0033747	6.403	0.0045808	715.4239479765007	25.684	0.096525	25.684	25.636	25.732	0	606	55	1.2585332	0.032396555	1.2585332	256.90677	0	6.6131744						137	5	3	NaN	NaN	NaN	0.84207	1	3512	3512		3.5732	0	1	16059			28482	5108	16397	16859	22758	22758					0.04504110585844501
VGGKARAG	8	Unmodified						0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.420948	714.413671	1.8476	0.0013218	5.0448	0.0036091	6.8923	0.0049309	715.424545023909	25.756	0.096498	25.745	25.672	25.769	-0.0116	603	49	1.2603331	0.028796911	1.2588136	257.27414		5.8783875	0.030243	0.00010357	0.00014014	NaN	3.5732	112	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13602			28483	5108	16397	16859							0.04504110585844501
VGGKMATHL	9	Unmodified	_VGGKMATHL_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.24983735575	2	457.249837	912.485122	0.97063	0.00044382	-4.8118	-0.0022002	-3.8412	-0.0017564	457.2478018642674	14.981	0.1922	14.981	14.933	15.126	0	1569	46	0.6707121	0.027949154	0.6707121	272.7021	0	11.363739						217	9	3	NaN	NaN	NaN	0.13602	1	6281	6281		30.61	3.8786	1	41924	+		28484	10439	16398	16860	22759	22759					0.02537862228200538
VGGKMATHL	9	Unmodified						0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	457.249837	912.485122	0.97063	0.00044382	-4.8118	-0.0022002	-3.8412	-0.0017564	457.2478018642674	14.981	0.1922	14.981	14.933	15.126	0	1569	46	0.6707121	0.027949154	0.6707121	272.7021		11.363739	-0.1253	1.1414E-05	0.0016914	NaN	30.61	217	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41924	+		28485	10439	16398	16860							0.02537862228200538
VGGKMATHL	9	Unmodified						0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	457.249837	912.485122	1.1234	0.00051366	-4.8335	-0.0022101	-3.7101	-0.0016964	457.2475002091625	15.244	0.28799	15.232	15.088	15.376	-0.012201	1572	46	0.6688489	0.027949154	0.66732943	271.94452		11.363739	0.1253	-8.4055E-06	-0.0016914	NaN	30.61	270	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40773	+		28486	10439	16398	16860							0.02537862228200538
VGGKPGVG	8	Unmodified	_VGGKPGVG_					0	0	0			REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.3882507494002	1	670.388251	669.380974	1.7203	0.0011533	7.1797	0.0048132	8.9	0.0059665	670.3920138409654	58.437	0.14382	58.437	58.413	58.557	0	525	178	1.3070582	0.10603607	1.3070582	267.1497	0	21.672714						397	7	4	NaN	NaN	NaN	0.84945	1	2582	2582		0	0	1	75495	+		28487	10081	16399	16861	22760	22760					0.033059034630127826
VGGKPGVG	8	Unmodified	_VGGKPGVG_					0	0	0			REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3882507494002	1	670.388251	669.380974	-0.42241	-0.00028318	9.2392	0.0061939	8.8168	0.0059107	670.3932358261588	58.434	0.14396	58.434	58.41	58.554	-0.00048447	522	190	1.3088527	0.11326134	1.3073332	267.51645	0	23.149475						356	7	4	NaN	NaN	NaN	0.84945	1	2489	2489		0	0	1	66744	+		28488	10081	16399	16861	22761	22761					0.033059034630127826
VGGKPGVG	8	Unmodified						0	0	0			REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	670.388251	669.380974	1.7203	0.0011533	7.1797	0.0048132	8.9	0.0059665	670.3920138409654	58.437	0.14382	58.437	58.413	58.557	0	525	178	1.3070582	0.10603607	1.3070582	267.1497		21.672714	0.0014761	-0.00067994	-0.00013755	NaN	0	397	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75495	+		28489	10081	16399	16861							0.033059034630127826
VGGKPGVG	8	Unmodified						0	0	0			REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	REV__ENST00000534407.5_1_11:124754789-124756747:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	670.388251	669.380974	-0.42241	-0.00028318	9.2392	0.0061939	8.8168	0.0059107	670.3932358261588	58.434	0.14396	58.434	58.41	58.554	-0.00048447	522	190	1.3088527	0.11326134	1.3073332	267.51645		23.149475	-0.0014761	0.00070075	0.00013755	NaN	0	356	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66744	+		28490	10081	16399	16861							0.033059034630127826
VGGLARVK	8	Unmodified	_VGGLARVK_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.5148482465002	1	799.514848	798.507572	1.9949	0.0015949	-1.2141	-0.00097066	0.78083	0.00062429	799.5138644128332	54.5	0.024071	54.5	54.5	54.524	0	450	52	1.3518641	0.030432343	1.3518641	275.4112	0	6.1998596						60	2	2	NaN	NaN	NaN	0.84887	1	4739	4739		0.32989	0	1	6284.6	+		28491	8421	16400	16862	22762	22762					0.10025829688140675
VGGLARVK	8	Unmodified	_VGGLARVK_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	799.5148482465002	1	799.514848	798.507572	2.0124	0.001609	3.2935	0.0026332	5.3059	0.0042421	799.5183460861397	54.572	0.048141	54.572	54.572	54.62	0	450	43	1.3518641	0.025060654	1.3518641	275.41116	0	5.1054993						65	3	2	NaN	NaN	NaN	0.84887	1	4740	4740		0.32989	0	1	5531.6	+		28492	8421	16400	16862	22763	22763					0.10025829688140675
VGGLARVK	8	Unmodified						0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	799.514848	798.507572	2.0124	0.001609	3.2935	0.0026332	5.3059	0.0042421	799.5183460861397	54.572	0.048141	54.572	54.572	54.62	0	450	43	1.3518641	0.025060654	1.3518641	275.41116		5.1054993	0.013422	-5.2188E-05	0.00075972	NaN	0.32989	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5531.6	+		28493	8421	16400	16862							0.10025829688140675
VGGLTGKL	8	Unmodified	_VGGLTGKL_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	744.4614156925	1	744.461416	743.454139	1.8016	0.0013412	-11.631	-0.0086587	-9.8293	-0.0073175	744.4526359812983	55.749	0.12031	55.749	55.725	55.845	0	570	145	1.2801172	0.086372495	1.2801172	261.12067	0	17.618439						295	6	3	NaN	NaN	NaN	0.84692	1	3966	3966		1.4396	0	1	97497			28494	5641	16401	16863	22764	22764					0.07215032185615655
VGGLTGKL	8	Unmodified						0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	744.461416	743.454139	-0.21774	-0.0001621	-10.857	-0.0080826	-11.075	-0.0082447	744.4531472795634	55.747	0.14434	55.746	55.722	55.866	-0.00059128	567	70	1.2819146	0.041349173	1.2803952	261.4873		8.434509	-0.001431	0.00031236	0.00013899	NaN	1.4396	210	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38915			28495	5641	16401	16863							0.07215032185615655
VGGNVTSNF	9	Unmodified	_VGGNVTSNF_					0	0	0		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4315721271001	1	894.431572	893.424296	1.7681	0.0015814	0.59683	0.00053382	2.3649	0.0021152	894.4336198498963	19.204	0.11999	19.204	19.18	19.3	0	450	43	1.3518641	0.025057912	1.3518641	274.91605	0	5.0957947						104	6	2	NaN	NaN	NaN	0.090258	1	5969	5969		37.231	4.7781	1	7753.5			28496	161	16402	16864	22765	22765					-0.026679515503701623
VGGNVTSNF	9	Unmodified	_VGGNVTSNF_					0	0	0		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4315721271001	1	894.431572	893.424296	1.8261	0.0016333	0.31335	0.00028027	2.1394	0.0019136	894.4322260928624	19.226	0.096109	19.212	19.188	19.284	-0.014141	447	37	1.3536539	0.02147603	1.3521345	275.28003	0	4.36734						83	5	2	NaN	NaN	NaN	0.032689	1	5854	5854		55.592	21.153	1	5945.7			28497	161	16402	16864	22766	22766					-0.026679515503701623
VGGPEIEL	8	Unmodified	_VGGPEIEL_					0	0	0		ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENST00000423695.6_1_5:10250480-10261980:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	813.4352605215	1	813.435261	812.427984	1.8929	0.0015397	0.96759	0.00078707	2.8605	0.0023268	813.4363629535937	24.888	0.096521	24.875	24.851	24.948	-0.012394	525	40	1.3070582	0.023331404	1.3055388	266.20584	0	4.7518616						75	5	2	NaN	NaN	NaN	0.14214	1	4817	4817		55.947	19.911	1	6026.5			28498	3713	16403	16865	22767	22767					0.014267182234789288
VGGPGPVA	8	Unmodified	_VGGPGPVA_					0	0	0		ENST00000509632.5_1_5:218448-220362:+|nuORF;ENST00000427415.1_1_3:195713425-195717151:-|nuORF;ENST00000504309.5_2_5:218439-223646:+|nuORF	ENST00000509632.5_1_5:218448-220362:+|nuORF	ENST00000509632.5_1_5:218448-220362:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479	1	653.361702	652.354425	-0.93645	-0.00061184	-2.4944	-0.0016298	-3.4309	-0.0022416	653.3596939195202	53.312	0.14398	53.312	53.264	53.408	-0.00053406	654	91	1.2297117	0.054121614	1.2281922	251.47221	0	11.067688						288	7	3	NaN	NaN	NaN	0.84876	1	2041	2041		0.39566	0	1	36767			28499	6954	16404	16866	22768	22768					0.014342145716568666
VGGRDGSS	8	Unmodified	_VGGRDGSS_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;ENSG00000150361|ENST00000377844|KLHL1;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.67501679320003	2	367.675017	733.335481	1.9162	0.00070454	-0.32018	-0.00011772	1.596	0.00058682	367.6749497567246	17.669	0.16784	17.669	17.573	17.741	0	1371	37	0.79324204	0.022198498	0.79324204	323.68658	0	9.058228						126	8	2	NaN	NaN	NaN	0.84455	1	3803	3803		2.7852	0	1	13682			28500	1734	16405	16867	22769	22769					-0.04185366790034095
VGGRDGSS	8	Unmodified						0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;ENSG00000150361|ENST00000377844|KLHL1;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	367.675017	733.335481	2.3817	0.0008757	1.4064	0.00051709	3.7881	0.0013928	367.6755258568036	18.026	0.14394	18.012	17.916	18.06	-0.013786	1371	34	0.79324204	0.020349741	0.7917226	323.68658		8.3038025	0.17141	0.00089	-0.00075972	NaN	2.7852	87	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7042.5			28501	1734	16405	16867							-0.04185366790034095
VGGRGPPP	8	Unmodified	_VGGRGPPP_					0	0	0		ENST00000240123.11_2_8:22432273-22432342:+|nuORF	ENST00000240123.11_2_8:22432273-22432342:+|nuORF	ENST00000240123.11_2_8:22432273-22432342:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.410048824	1	736.410049	735.402772	-0.085411	-6.2898E-05	-6.1671	-0.0045415	-6.2525	-0.0046044	736.4037692468236	54.57	0.096455	54.569	54.545	54.642	-0.00061798	564	70	1.2837118	0.04134488	1.2821923	261.9058	0	8.435242						99	5	2	NaN	NaN	NaN	0.84887	1	3757	3757		0.32989	0	1	7309.4			28502	6258	16406	16868	22770	22770					0.024487082115570047
VGGRGPSGLN	10	Unmodified	_VGGRGPSGLN_					0	0	0		ENST00000417814.3_1_1:12202630-12202693:+|nuORF	ENST00000417814.3_1_1:12202630-12202693:+|nuORF	ENST00000417814.3_1_1:12202630-12202693:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	457.24614057384997	2	457.246141	912.477728	0.92215	0.00042165	2.8769	0.0013154	3.799	0.0017371	457.2475022023945	14.981	0.1922	14.981	14.933	15.126	0	1365	64	0.7969414	0.03882426	0.7969414	324.02515	0	15.7854						218	9	3	NaN	NaN	NaN	0.507	1	6280	6280		19.164	2.7469	1	27757			28503	6891	16407	16869	22771	22771					0.017988459521347977
VGGSAGNS	8	Unmodified	_VGGSAGNS_					0	0	0		ENSG00000085265|ENST00000371806|FCN1	ENSG00000085265|ENST00000371806|FCN1	ENSG00000085265|ENST00000371806|FCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	324.65101038065	2	324.65101	647.287468	1.5002	0.00048704	1.6429	0.00053338	3.1431	0.0010204	324.6534548650829	35.07	0.0965	35.07	35.046	35.143	-4.5776E-05	1542	118	0.6874725	0.07251793	0.6859531	281.20807	0	29.663208						429	5	6	NaN	NaN	NaN	0.84887	1	1899	1899		0.32989	0	1	83755			28504	966	16408	16870	22772	22772					-0.05028440710088944
VGGSAGNS	8	Unmodified						0	0	0		ENSG00000085265|ENST00000371806|FCN1	ENSG00000085265|ENST00000371806|FCN1	ENSG00000085265|ENST00000371806|FCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	324.65101	647.287468	1.1304	0.00036698	3.1855	0.0010342	4.3159	0.0014012	324.653733855512	34.999	0.072269	34.999	34.951	35.023	0	1542	118	0.6874725	0.07251793	0.6874725	281.20807		29.663177	-0.035457	0.0005282	0.00075972	NaN	0.32989	240	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46211			28505	966	16408	16870							-0.05028440710088944
VGGSSGSN	8	Unmodified	_VGGSSGSN_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.2896589168	1	664.289659	663.282382	0.33339	0.00022147	9.2016	0.0061125	9.535	0.006334	664.2967161677275	51.012	0.11978	51.013	50.965	51.085	0.00057983	651	55	1.2315145	0.03245902	1.229995	251.75563	0	6.6355133						103	6	2	NaN	NaN	NaN	0.84887	1	2325	2325		0.32989	0	1	5714.6	+		28506	13594	16409	16871	22773	22773					-0.06272744572709144
VGGVGACK	8	Unmodified	_VGGVGACK_					0	0	0		ENST00000558588.5_1_15:40581558-40583812:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40581558-40583812:-|nuORF	ENST00000558588.5_1_15:40581558-40583812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.82514	0.00056965	4.6457	0.0032072	5.4709	0.0037769	690.3634799120753	33.14	0.16888	33.138	33.066	33.235	-0.0024757	735	85	1.1809633	0.05063796	1.1794438	241.23706	0	10.343887						255	8	2	NaN	NaN	NaN	0.84876	1	2946	2946		0.39566	0	1	24934			28507	3111	16410	16872	22774	22774					-0.004057427887460108
VGGVHGLF	8	Unmodified	_VGGVHGLF_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.4304499151001	1	785.43045	784.423173	1.1585	0.00090995	-8.7642	-0.0068837	-7.6057	-0.0059737	785.4229035230402	33.359	0.16895	33.359	33.311	33.48	0	465	121	1.3429124	0.07170868	1.3429124	273.67056	0	14.613434						407	8	3	NaN	NaN	NaN	0.81214	1	4559	4559		7.5902	0	1	50251	+		28508	8733	16411	16873	22775	22775					0.02233878871379602
VGGVLTLL	8	Unmodified	_VGGVLTLL_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	771.4974668478002	1	771.497467	770.49019	1.3228	0.0010205	-0.18421	-0.00014212	1.1386	0.00087843	771.4970315713285	30.1	0.12064	30.094	30.07	30.19	-0.0064106	507	52	1.3178225	0.030494094	1.316303	268.64096	0	6.216278						110	6	2	NaN	NaN	NaN	0.75682	1	4296	4296		15.013	0	1	10569			28509	5778	16412	16874	22776	22776					0.09576489362484608
VGHNQSLC	8	Unmodified	_VGHNQSLC_					0	0	0			REV__ENST00000466477.5_1_2:30670231-30756118:+|nuORF	REV__ENST00000466477.5_1_2:30670231-30756118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.3934124817999	1	857.393412	856.386136	1.9314	0.001656	0.37059	0.00031774	2.302	0.0019737	857.395113522591	55.196	0.096279	55.196	55.196	55.292	0	441	46	1.3572328	0.026843548	1.3572328	276.1888	0	5.462494						88	5	3	NaN	NaN	NaN	0.84455	1	5483	5483		2.7852	1.3456	1	6984.3	+		28510	12304	16413	16875	22777	22777					-0.04780160736709149
VGHTAAVP	8	Unmodified	_VGHTAAVP_					0	0	0		ENST00000360370.8_1_3:125725252-125725423:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000360370.8_1_3:125725252-125725423:-|nuORF	ENST00000360370.8_1_3:125725252-125725423:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.20849546979997	2	376.208495	750.402438	1.2156	0.00045731	-4.6167	-0.0017368	-3.4011	-0.0012795	376.2071236044065	30.584	0.16895	30.584	30.511	30.68	0	1461	55	0.7376554	0.03339541	0.7376554	300.8789	0	13.6214905						168	8	3	NaN	NaN	NaN	0.8439	1	4064	4064		3.1533	0	1	24362			28511	6597	16414	16876	22778	22778					0.017252884917070332
VGHVLLSF	8	Unmodified	_VGHVLLSF_					0	0	0			REV__ENSG00000187474|ENST00000339223|FPR3	REV__ENSG00000187474|ENST00000339223|FPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	436.2554456624	2	436.255446	870.496338	0.47338	0.00020651	-2.4374	-0.0010633	-1.964	-0.00085681	436.25443849193107	41.665	0.1683	41.673	41.529	41.697	0.0082588	1413	58	0.7673241	0.035191536	0.76580465	312.2062	0	14.3186035						141	8	2	NaN	NaN	NaN	0.84651	1	5531	5531		1.6704	0	1	23973	+		28512	11024	16415	16877	22779	22779					0.05591007593989161
VGIVHSAK	8	Unmodified	_VGIVHSAK_					0	0	0		ENST00000314393.5_1_8:123985618-123985864:+|nuORF	ENST00000314393.5_1_8:123985618-123985864:+|nuORF	ENST00000314393.5_1_8:123985618-123985864:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.4832137671001	1	810.483214	809.475937	1.3942	0.00113	-8.6606	-0.0070193	-7.2664	-0.0058893	810.4778357342166	33.624	0.072414	33.624	33.6	33.673	0	447	37	1.3536539	0.021478295	1.3536539	275.71268	0	4.3746643						48	4	2	NaN	NaN	NaN	0.84207	1	4884	4884		3.5732	0.41988	1	2954			28513	6462	16416	16878	22780	22780					0.06357836934182615
VGKAVATA	8	Unmodified	_VGKAVATA_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF;ENST00000514442.5_1_5:149754639-149771259:+|nuORF;nc|ENSG00000070814|Q13428-5|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.7186960153499	2	358.718696	715.422839	1.2508	0.00044868	-8.9332	-0.0032045	-7.6824	-0.0027558	358.7165694861013	55.722	0.048203	55.722	55.698	55.746	-0.00059128	1431	22	0.75620437	0.012977898	0.7546849	308.71457	0	5.2981567						35	3	2	NaN	NaN	NaN	0.84945	1	3450	3450		0	0	1	1874			28514	770	16417	16879	22781	22781					0.05374459151505562
VGKGGGGA	8	Unmodified	_VGKGGGGA_					0	0	0		ENST00000334454.10_1_14:23502854-23503715:-|nuORF	ENST00000334454.10_1_14:23502854-23503715:-|nuORF	ENST00000334454.10_1_14:23502854-23503715:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3256504926	1	602.32565	601.318374	0.68249	0.00041108	-9.8409	-0.0059274	-9.1584	-0.0055164	602.3206828773211	43.463	0.047985	43.474	43.45	43.498	0.01099	738	40	1.179155	0.023506641	1.1776356	241.5532	0	4.815399						71	3	3	NaN	NaN	NaN	0.84945	1	605	605		0	0	1	3632.4			28515	6518	16418	16880	22782	22782					0.0017675739479727781
VGKGGGGH	8	Unmodified	_VGKGGGGH_					0	0	0			REV__ENST00000475826.1_1_6:32121346-32121991:-|nuORF	REV__ENST00000475826.1_1_6:32121346-32121991:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3474485672	1	668.347449	667.340172	1.7574	0.0011746	-1.9745	-0.0013196	-0.21704	-0.00014506	668.3459597424709	35.167	0.048317	35.167	35.167	35.215	-4.5776E-05	717	40	1.1918083	0.023486614	1.1902889	243.60873	0	4.800705						46	3	2	NaN	NaN	NaN	0.84945	1	2440	2440		0	0	1	3412.9	+		28516	12354	16419	16881	22783	22783					-0.006804378566357627
VGKSKLGV	8	Unmodified	_VGKSKLGV_					0	0	0		nc|ENSG00000176834|Q8N0Z9-2|VSIG10;ENSG00000176834|ENST00000359236|VSIG10	nc|ENSG00000176834|Q8N0Z9-2|VSIG10	nc|ENSG00000176834|Q8N0Z9-2|VSIG10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.5036148582002	1	787.503615	786.496338	1.8929	0.0014907	7.6692	0.0060396	9.5622	0.0075302	787.5093809705032	55.1	0.12042	55.1	55.076	55.196	0	303	49	1.4393384	0.028497696	1.4393384	293.3077	0	5.8072815						97	6	2	NaN	NaN	NaN	0.84512	1	4586	4586		2.4615	0	1	7614.1			28517	5041	16420	16882	22784	22784					0.09455007593999198
VGKTPMLELV	10	Unmodified	_VGKTPMLELV_					0	0	0		tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	362.8790988830333	3	362.879099	1085.61547	2.7956	0.0010145	5.1236	0.0018592	7.9192	0.0028737	362.8808828516031	18.41	0.072065	18.396	18.348	18.42	-0.013948	1494	28	0.7172283	0.01672399	0.71570885	436.38126	0	10.1753235						57	4	2	NaN	NaN	NaN	0.70677	1	11907	11907		3.9087	0	1	4165.7			28518	13852	16421	16883	22785	22785					0.07608413436514638
VGKVLLVPG	9	Unmodified	_VGKVLLVPG_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.5818651792002	1	881.581865	880.574589	1.8089	0.0015947	0.73055	0.00064404	2.5394	0.0022387	881.5817797917927	59.037	0.12013	59.037	59.013	59.133	0	306	64	1.4375578	0.037397385	1.4375578	292.40747	0	7.606842						171	6	3	NaN	NaN	NaN	0.6762	1	5815	5815		1.2418	0.96645	1	17799			28519	1698	16422	16884	22786	22786					0.1295244017924233
VGKVVRGG	8	Unmodified	_VGKVVRGG_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4835481181002	1	771.483548	770.476272	1.7991	0.001388	4.3859	0.0033836	6.185	0.0047717	771.486538878596	59.133	0.19204	59.133	59.013	59.205	0	489	67	1.3285799	0.039431334	1.3285799	270.83395	0	8.0381775						202	9	2	NaN	NaN	NaN	0.84887	1	4367	4367		0.32989	0	1	25426			28520	733	16423	16885	22787	22787					0.08185256654053319
VGLALPALL	9	Unmodified	_VGLALPALL_					0	0	0			REV__ENST00000554778.1_3_14:52118819-52156529:+|nuORF	REV__ENST00000554778.1_3_14:52118819-52156529:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.5709661418999	1	866.570966	865.56369	1.8842	0.0016328	-4.108	-0.0035599	-2.2238	-0.001927	866.5678070748562	55.196	0.09626	55.196	55.172	55.268	0	339	64	1.4179583	0.037441134	1.4179583	288.49777	0	7.6177673						164	5	4	NaN	NaN	NaN	0.68748	1	5614	5614		0.27539	0	1	40345	+		28521	12755	16424	16886	22788	22788					0.12553037804923406
VGLGKAAA	8	Unmodified	_VGLGKAAA_					0	0	0			REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.4195508777999	1	686.419551	685.412274	-0.26157	-0.00017954	-9.3539	-0.0064207	-9.6154	-0.0066002	686.4133751274813	55.891	0.096043	55.89	55.866	55.962	-0.00059128	462	73	1.3447032	0.04297471	1.3431838	274.71527	0	8.7795105						114	5	2	NaN	NaN	NaN	0.84876	1	2871	2871		0.39566	0	1	13097	+		28522	12883	16425	16887	22789	22789					0.05698476497070715
VGLGKAAA	8	Unmodified						0	0	0			REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	686.419551	685.412274	2.0062	0.0013771	-12.343	-0.0084723	-10.336	-0.0070952	686.4105055416009	55.893	0.072067	55.893	55.869	55.941	0	465	73	1.3429124	0.04298401	1.3429124	274.34946		8.781372	0.001427	-0.0011937	-0.00013564	NaN	0.39566	122	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14125	+		28523	12883	16425	16887							0.05698476497070715
VGLGKAAA	8	Unmodified						0	0	0			REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	REV__ENST00000586152.1_1_16:4926958-4927603:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	686.419551	685.412274	-0.26157	-0.00017954	-9.3539	-0.0064207	-9.6154	-0.0066002	686.4133751274813	55.891	0.096043	55.89	55.866	55.962	-0.00059128	462	73	1.3447032	0.04297471	1.3431838	274.71527		8.7795105	-0.001427	0.00085783	0.00013564	NaN	0.39566	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13097	+		28524	12883	16425	16887							0.05698476497070715
VGLKGMLI	8	Unmodified	_VGLKGMLI_					0	0	0		SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant;ENSG00000147606|ENST00000276609|SLC26A7;nc|ENSG00000147606|Q8TE54-2|SLC26A7	SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	830.5168220814002	1	830.516822	829.509546	0.019798	1.6443E-05	9.4859	0.0078782	9.5057	0.0078946	830.524442721565	56.587	0.047947	56.586	56.562	56.61	-0.00056458	276	43	1.4553556	0.024906397	1.4538362	296.30777	0	5.0708923						64	3	2	NaN	NaN	NaN	0.84651	1	5017	5017		1.6704	0	1	4279			28525	3604	16426	16888	22790	22790					0.08797122381736244
VGLKLDKI	8	Unmodified	_VGLKLDKI_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	885.5767798013	1	885.57678	884.569503	-0.070274	-6.2233E-05	0.052017	4.6065E-05	-0.018256	-1.6167E-05	885.5765089100172	58.003	0.048	58.002	57.978	58.026	-0.00051117	306	52	1.4375578	0.030274034	1.4360384	292.38715	0	6.157501						66	3	2	NaN	NaN	NaN	0.84727	1	5750	5750		1.2418	0	1	8254.3	+		28526	10697	16427	16889	22791	22791					0.12260136316592707
VGLKLDKI	8	Unmodified						0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	885.57678	884.569503	-0.070274	-6.2233E-05	0.052017	4.6065E-05	-0.018256	-1.6167E-05	885.5765089100172	58.003	0.048	58.002	57.978	58.026	-0.00051117	306	52	1.4375578	0.030274034	1.4360384	292.38715		6.157501	-0.0013901	0.00014398	0.0019118	NaN	1.2418	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8254.3	+		28527	10697	16427	16889							0.12260136316592707
VGLKPIVP	8	Unmodified	_VGLKPIVP_					0	0	0		nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-3|KYAT3	nc|ENSG00000137944|Q6YP21-3|KYAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.5447513914	1	822.544751	821.537475	2.3425	0.0019268	-3.7858	-0.003114	-1.4433	-0.0011872	822.5414339079283	55.148	0.14452	55.148	55.124	55.268	0	405	226	1.3786905	0.13438964	1.3786905	280.74332	0	27.365814						431	7	4	NaN	NaN	NaN	0.84876	1	5039	5039		0.39566	0	1	190240			28528	3119	16428	16890	22792	22792					0.1195676863345625
VGLNYNNFNV	10	Unmodified	_VGLNYNNFNV_					0	0	0			REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.2854626996	2	577.285463	1152.55637	1.0033	0.00057917	-1.3009	-0.00075101	-0.29766	-0.00017184	577.2852381555997	12.798	0.12006	12.789	12.717	12.837	-0.00947	1173	40	0.91489893	0.023878634	0.9133795	370.83374	0	9.67868						171	6	4	NaN	NaN	NaN	0.52943	1	14385	14385		17.799	0	1	18205	+		28529	11177	16429	16891	22793	22793					-0.013803465334376597
VGLTYSLL	8	Unmodified	_VGLTYSLL_					0	0	0			REV__ENST00000451469.1_1_3:39400337-39400661:+|nuORF	REV__ENST00000451469.1_1_3:39400337-39400661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.25511131140007	2	433.255111	864.49567	1.49	0.00064554	-0.31738	-0.00013751	1.1726	0.00050804	433.254613055398	55.629	0.072105	55.629	55.604	55.677	0	1341	31	0.8117308	0.018476725	0.8117308	330.30978	0	7.5185547						48	4	2	NaN	NaN	NaN	0.84692	1	5601	5601		1.4396	0	1	3405.3	+		28530	12233	16430	16892	22794	22794					0.05800168154291896
VGLVGGGG	8	Unmodified	_VGLVGGGG_					0	0	0			REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	308.17666402515005	2	308.176664	614.338775	1.4147	0.00043599	6.9875	0.0021534	8.4023	0.0025894	308.1794468735675	27.542	0.28958	27.533	27.388	27.677	-0.0095501	1524	58	0.698637	0.0353446	0.69711757	286.09058	0	14.473541						305	13	2	NaN	NaN	NaN	0.84651	1	919	919		1.6704	0	1	42251	+		28531	10993	16431	16893	22795	22795					0.016179280546225527
VGLVGGGG	8	Unmodified						0	0	0			REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	308.176664	614.338775	1.5054	0.00046393	7.0854	0.0021836	8.5908	0.0026475	308.1790921131306	27.398	0.048311	27.398	27.35	27.398	0	1530	49	0.6949163	0.029765487	0.6949163	284.56696		12.188904	-0.067226	4.1512E-05	-0.0011006	NaN	1.6704	80	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10469	+		28532	10993	16431	16893							0.016179280546225527
VGLVGGGG	8	Unmodified						0	0	0			REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	REV__ENST00000564068.1_1_15:75630375-75630672:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	308.176664	614.338775	1.4147	0.00043599	6.9875	0.0021534	8.4023	0.0025894	308.1794468735675	27.542	0.28958	27.533	27.388	27.677	-0.0095501	1524	58	0.698637	0.0353446	0.69711757	286.09058		14.473541	0.067226	-1.8821E-05	0.0011006	NaN	1.6704	305	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42251	+		28533	10993	16431	16893							0.016179280546225527
VGLVSPQT	8	Unmodified	_VGLVSPQT_					0	0	0		ENST00000571689.1_1_17:5138375-5138423:+|nuORF	ENST00000571689.1_1_17:5138375-5138423:+|nuORF	ENST00000571689.1_1_17:5138375-5138423:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.4512449367002	1	800.451245	799.443968	2.0229	0.0016192	-0.28865	-0.00023105	1.7342	0.0013882	800.4519208001877	55.604	0.12015	55.604	55.556	55.677	0	387	118	1.389409	0.06971133	1.389409	283.05447	0	14.201782						256	6	2	NaN	NaN	NaN	0.84455	1	4743	4743		2.7852	0	1	32340			28534	7647	16432	16894	22796	22796					0.03622424460388629
VGNKALVS	8	Unmodified	_VGNKALVS_					0	0	0		ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.4672293519	1	787.467229	786.459953	1.8954	0.0014926	-4.9805	-0.003922	-3.085	-0.0024294	787.4627137727887	58.413	0.072018	58.413	58.365	58.437	0	495	49	1.3249949	0.028683543	1.3249949	270.0071	0	5.845093						90	4	2	NaN	NaN	NaN	0.84887	1	4585	4585		0.32989	0	1	7253.4			28535	3856	16433	16895	22797	22797					0.05818130697264223
VGNTERPVFWN	11	Unmodified	_VGNTERPVFWN_					0	0	0		nc|ENSG00000168405|Q9Y471-4|CMAHP;nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	nc|ENSG00000168405|Q9Y471-4|CMAHP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	440.2228046188667	3	440.222805	1317.64658	1.3191	0.00058072	0.25667	0.00011299	1.5758	0.00069371	440.2233094037413	17.117	0.096052	17.117	17.069	17.165	0	1440	49	0.7506418	0.029671907	0.7506418	455.70337	0	18.013367						90	5	2	NaN	NaN	NaN	0.50669	1	19073	19073		10.213	2.2721	1	12474			28536	7979	16434	16896	22798	22798					0.0004670279499805474
VGPGAHKG	8	Unmodified	_VGPGAHKG_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3943987598001	1	722.394399	721.387122	0.99512	0.00071887	-10.483	-0.0075728	-9.4878	-0.006854	722.3866649534802	30.727	0.2413	30.722	30.673	30.915	-0.0057545	630	76	1.2441287	0.04505074	1.2426093	253.9202	0	9.194595						217	11	3	NaN	NaN	NaN	0.81807	1	3544	3544		6.794	2.8255	1	22499			28537	5651	16435	16897	22799	22799					0.015284216945133267
VGPGPPAA	8	Unmodified	_VGPGPPAA_					0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.3617016479	1	665.361702	664.354425	1.5071	0.0010028	-3.7657	-0.0025055	-2.2586	-0.0015028	665.3593900483772	36.181	0.072357	36.181	36.157	36.229	0	804	40	1.1393254	0.023564696	1.1393254	232.90211	0	4.8171234						55	4	2	NaN	NaN	NaN	0.84876	1	2438	2438		0.39566	0	1	4366.7	+		28538	8570	16436	16898	22800	22800					0.008822145716521845
VGPPAVSG	8	Unmodified	_VGPPAVSG_					0	0	0		ENST00000484110.1_1_2:48757310-48757586:+|nuORF	ENST00000484110.1_1_2:48757310-48757586:+|nuORF	ENST00000484110.1_1_2:48757310-48757586:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.3722663342002	1	683.372266	682.36499	1.0495	0.00071722	5.8433	0.0039931	6.8928	0.0047104	683.3762248461921	31.163	0.19304	31.163	31.139	31.332	0	615	106	1.2531329	0.06307089	1.2531329	256.0303	0	12.886169						335	9	3	NaN	NaN	NaN	0.84651	1	2890	2890		1.6704	0	1	44993			28539	7225	16437	16899	22801	22801					0.011101972261030824
VGPPAVSG	8	Unmodified						0	0	0		ENST00000484110.1_1_2:48757310-48757586:+|nuORF	ENST00000484110.1_1_2:48757310-48757586:+|nuORF	ENST00000484110.1_1_2:48757310-48757586:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	683.372266	682.36499	1.206	0.00082415	5.0959	0.0034824	6.3019	0.0043066	683.3758127979593	31.186	0.19307	31.181	31.133	31.326	-0.0050716	615	88	1.2531329	0.05223632	1.2516136	256.0303		10.672531	0.009014	-0.00023009	-0.00075972	NaN	1.6704	292	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47476			28540	7225	16437	16899							0.011101972261030824
VGPPGSLL	8	Unmodified	_VGPPGSLL_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.4348665910001	1	739.434867	738.42759	0.66579	0.00049231	6.2348	0.0046102	6.9006	0.0051025	739.438490475019	38.131	0.12013	38.131	38.059	38.179	0	519	40	1.310647	0.023326516	1.310647	267.38107	0	4.7587585						84	6	2	NaN	NaN	NaN	0.81807	1	3895	3895		6.794	0	1	5275.6	+		28541	8449	16438	16900	22802	22802					0.047913432942777945
VGPPGSLL	8	Unmodified	_VGPPGSLL_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.4348665910001	1	739.434867	738.42759	2.4174	0.0017875	5.1155	0.0037826	7.5329	0.0055701	739.4393910618369	38.081	0.048119	38.084	38.084	38.132	0.0034256	513	40	1.3142352	0.02332151	1.3127158	268.1131	0	4.757721						47	3	2	NaN	NaN	NaN	0.84207	1	3821	3821		3.5732	0	1	3158.1	+		28542	8449	16438	16900	22803	22803					0.047913432942777945
VGPPGSLL	8	Unmodified						0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.434867	738.42759	0.66579	0.00049231	6.2348	0.0046102	6.9006	0.0051025	739.438490475019	38.131	0.12013	38.131	38.059	38.179	0	519	40	1.310647	0.023326516	1.310647	267.38107		4.7587585	0.02355	0.00037276	-0.0010343	NaN	6.794	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5275.6	+		28543	8449	16438	16900							0.047913432942777945
VGPPGSLL	8	Unmodified						0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	739.434867	738.42759	2.4174	0.0017875	5.1155	0.0037826	7.5329	0.0055701	739.4393910618369	38.081	0.048119	38.084	38.084	38.132	0.0034256	513	40	1.3142352	0.02332151	1.3127158	268.1131		4.757721	-0.02355	-0.00045489	0.0010343	NaN	6.794	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3158.1	+		28544	8449	16438	16900							0.047913432942777945
VGPPGVGQ	8	Unmodified	_VGPPGVGQ_					0	0	0			REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	710.3831653715001	1	710.383165	709.375889	1.5248	0.0010832	5.0592	0.003594	6.5839	0.0046771	710.3868790506268	28.966	0.09651	28.958	28.934	29.031	-0.0077229	663	37	1.2243022	0.021637082	1.2227827	249.95248	0	4.417389						63	5	2	NaN	NaN	NaN	0.84692	1	3352	3352		1.4396	0	1	3553.1	+		28545	11580	16439	16901	22804	22804					0.009575996003832188
VGPPGVPG	8	Unmodified	_VGPPGVPG_					0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3773517121001	1	679.377352	678.370075	1.5665	0.0010642	-0.062998	-4.28E-05	1.5035	0.0010214	679.3771806543418	19.372	0.11999	19.372	19.348	19.468	0	714	40	1.1936152	0.023486614	1.1936152	243.89836	0	4.7991486						87	6	2	NaN	NaN	NaN	0.84876	1	2806	2806		0.39566	0	1	7287.7	+		28546	13097	16440	16902	22805	22805					0.018025010887186
VGPPGVPG	8	Unmodified	_VGPPGVPG_					0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3773517121001	1	679.377352	678.370075	1.7428	0.001184	1.4043	0.00095405	3.1471	0.0021381	679.3784614355354	19.418	0.14434	19.404	19.38	19.524	-0.014141	708	37	1.1972283	0.021676421	1.1957089	244.63666	0	4.4292603						83	7	2	NaN	NaN	NaN	0.84876	1	2724	2724		0.39566	0	1	5373.6	+		28547	13097	16440	16902	22806	22806					0.018025010887186
VGPPGVPG	8	Unmodified						0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	679.377352	678.370075	1.5665	0.0010642	-0.062998	-4.28E-05	1.5035	0.0010214	679.3771806543418	19.372	0.11999	19.372	19.348	19.468	0	714	40	1.1936152	0.023486614	1.1936152	243.89836		4.7991486	-0.016032	-0.00037712	-0.0010468	NaN	0.39566	87	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7287.7	+		28548	13097	16440	16902							0.018025010887186
VGPPGVPG	8	Unmodified						0	0	0			REV__nc|ENSG00000101203|Q9P218-3|COL20A1	REV__nc|ENSG00000101203|Q9P218-3|COL20A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	679.377352	678.370075	1.7428	0.001184	1.4043	0.00095405	3.1471	0.0021381	679.3784614355354	19.418	0.14434	19.404	19.38	19.524	-0.014141	708	37	1.1972283	0.021676421	1.1957089	244.63666		4.4292603	0.016032	0.00061973	0.0010468	NaN	0.39566	83	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5373.6	+		28549	13097	16440	16902							0.018025010887186
VGPPGYLL	8	Unmodified	_VGPPGYLL_					0	0	0		ENST00000559124.1_1_14:102963896-102964591:+|nuORF;ENSG00000196663|ENST00000359520|TECPR2	ENST00000559124.1_1_14:102963896-102964591:+|nuORF	ENST00000559124.1_1_14:102963896-102964591:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4661667194001	1	815.466167	814.45889	1.5732	0.0012829	5.2412	0.0042741	6.8144	0.0055569	815.4705675971699	38.73	0.21627	38.734	38.686	38.902	0.0040245	390	61	1.3876231	0.03572464	1.3861036	282.6026	0	7.2756653						245	10	3	NaN	NaN	NaN	0.77734	1	4840	4840		12.26	8.206	1	20659			28550	5650	16441	16903	22807	22807					0.04423916328380528
VGPPGYLL	8	Unmodified						0	0	0		ENST00000559124.1_1_14:102963896-102964591:+|nuORF;ENSG00000196663|ENST00000359520|TECPR2	ENST00000559124.1_1_14:102963896-102964591:+|nuORF	ENST00000559124.1_1_14:102963896-102964591:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.466167	814.45889	1.0709	0.00087331	5.1385	0.0041902	6.2094	0.0050636	815.4697837695337	38.756	0.19221	38.756	38.684	38.876	0	393	61	1.3858368	0.03572464	1.3858368	282.23883		7.2756653	0.011096	-5.7597E-05	-0.00013335	NaN	12.26	241	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20904			28551	5650	16441	16903							0.04423916328380528
VGPPPGLA	8	Unmodified	_VGPPPGLA_					0	0	0			REV__ENSG00000175592|ENST00000312562|FOSL1	REV__ENSG00000175592|ENST00000312562|FOSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	354.20796415354994	2	354.207964	706.401375	1.4772	0.00052325	-4.2533	-0.0015065	-2.776	-0.0009833	354.2065498222565	34.251	0.3858	34.249	34.129	34.514	-0.0012474	1470	40	0.7320868	0.024135947	0.73056734	298.94022	0	9.855652						315	17	3	NaN	NaN	NaN	0.84876	1	3287	3287		0.39566	0	1	58674	+		28552	10732	16442	16904	22808	22808					0.03643074122794587
VGPQGPAV	8	Unmodified	_VGPQGPAV_					0	0	0		nc|ENSG00000127586|Q8WVB6-3|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-3|CHTF18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	724.3988154356999	1	724.398815	723.391539	1.414	0.0010243	-3.646	-0.0026411	-2.2319	-0.0016168	724.396052431405	36.445	0.1446	36.446	36.398	36.543	0.0016785	651	58	1.2315145	0.034249544	1.229995	251.33269	0	6.9897766						161	7	2	NaN	NaN	NaN	0.84876	1	3584	3584		0.39566	0	1	23169			28553	2541	16443	16905	22809	22809					0.01877886117415528
VGPQHAGV	8	Unmodified	_VGPQHAGV_					0	0	0		SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;ENST00000485069.1_1_2:220336438-220336879:+|nuORF	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	764.4049634461	1	764.404963	763.397687	-0.0010805	-8.2591E-07	3.2663	0.0024968	3.2652	0.002496	764.4070233750957	55.771	0.048218	55.77	55.746	55.794	-0.00059128	582	52	1.2729256	0.030575633	1.2714062	259.5308	0	6.2338867						67	3	2	NaN	NaN	NaN	0.84692	1	4190	4190		1.4396	0.19772	1	7180.3			28554	791	16444	16906	22810	22810					0.006524043489434916
VGPSTPMP	8	Unmodified	_VGPSTPMP_					0	0	0			REV__chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	REV__chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	785.3862018389	1	785.386202	784.378925	1.0547	0.00082832	1.7346	0.0013623	2.7893	0.0021907	785.3879220197141	39.791	0.072357	39.791	39.742	39.815	0	561	61	1.2855089	0.035927057	1.2855089	261.97253	0	7.321533						70	4	2	NaN	NaN	NaN	0.83211	1	4556	4556		4.9097	0.85605	1	4551.4	+		28555	8240	16445	16907	22811	22811					-0.021888933371315034
VGPTPGGL	8	Unmodified	_VGPTPGGL_					0	0	0		ENST00000462188.1_1_22:22049506-22049776:+|nuORF	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	ENST00000462188.1_1_22:22049506-22049776:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	697.3879163984001	1	697.387916	696.38064	0.75697	0.0005279	5.6777	0.0039595	6.4346	0.0044874	697.391970066299	33.19	0.26546	33.19	33.142	33.407	0	639	121	1.2387238	0.072146535	1.2387238	252.98616	0	14.734604						403	12	3	NaN	NaN	NaN	0.82332	1	3169	3169		6.0903	0	1	86714			28556	7084	16446	16908	22812	22812					0.020304837431467604
VGPWQCPEEPE	11	Unmodified	_VGPWQCPEEPE_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.18513917106657	3	424.185139	1269.53359	0.95155	0.00040363	-0.92697	-0.0003932	0.024587	1.0429E-05	424.18531847440147	12.054	0.16805	12.046	11.998	12.166	-0.0081863	1515	37	0.7042165	0.02231443	0.70269704	427.6871	0	13.552063						134	8	3	NaN	NaN	NaN	0.64656	1	17402	17402		5.5374	2.233	1	12474			28557	629	16447	16909	22813	22813					-0.09039733713257192
VGQGGVGL	8	Unmodified	_VGQGGVGL_					0	0	0		ENST00000484881.5_1_2:74756974-74758788:+|nuORF	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3831653715	1	686.383165	685.375889	2.0059	0.0013768	-4.8844	-0.0033526	-2.8785	-0.0019757	686.3793890154446	57.525	0.047951	57.525	57.501	57.549	0	609	67	1.2567334	0.039604306	1.2567334	256.74377	0	8.090942						87	3	2	NaN	NaN	NaN	0.84876	1	2948	2948		0.39566	0	1	10243			28558	7231	16448	16910	22814	22814					0.020615996003698456
VGRCGGCL	8	Unmodified	_VGRCGGCL_					0	0	0			REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.6807333353	2	382.680733	763.346914	1.8754	0.00071766	-0.60844	-0.00023284	1.2669	0.00048482	382.6805488072051	17.81	0.16785	17.796	17.676	17.844	-0.013784	1350	37	0.80618626	0.022184074	0.8046668	328.73178	0	9.045837						123	8	2	NaN	NaN	NaN	0.82332	1	4182	4182		6.0903	0	1	18978	+		28559	11716	16449	16911	22815	22815					-0.04422584291921794
VGRCGGCL	8	Unmodified						0	0	0			REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	382.680733	763.346914	1.7706	0.00067758	-1.2552	-0.00048033	0.51545	0.00019725	382.6801515698614	17.501	0.19175	17.501	17.477	17.669	0	1350	34	0.80618626	0.020334303	0.80618626	328.73178		8.291565	-0.14733	-0.00027766	0.00075972	NaN	6.0903	131	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11959	+		28560	11716	16449	16911							-0.04422584291921794
VGRCGGCL	8	Unmodified						0	0	0			REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	REV__ENST00000320095.11_2_17:81037849-81042918:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	382.680733	763.346914	1.8754	0.00071766	-0.60844	-0.00023284	1.2669	0.00048482	382.6805488072051	17.81	0.16785	17.796	17.676	17.844	-0.013784	1350	37	0.80618626	0.022184074	0.8046668	328.73178		9.045837	0.14733	0.00021732	-0.00075972	NaN	6.0903	123	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18978	+		28561	11716	16449	16911							-0.04422584291921794
VGRGKKRG	8	Unmodified	_VGRGKKRG_					0	0	0			REV__RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant	REV__RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.5427943315001	1	857.542794	856.535518	2.0838	0.001787	-5.129	-0.0043984	-3.0452	-0.0026114	857.5396955977055	56.78	0.12018	56.78	56.756	56.876	0	252	88	1.4695803	0.051561713	1.4695803	299.05005	0	10.492462						343	6	5	NaN	NaN	NaN	0.84887	1	5497	5497		0.32989	0	1	68584	+		28562	8420	16450	16912	22816	22816					0.1015115266822022
VGRLQGAA	8	Unmodified	_VGRLQGAA_					0	0	0			REV__nc|ENSG00000062524|P29376-2|LTK	REV__nc|ENSG00000062524|P29376-2|LTK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.22721953919995	2	386.22722	770.439886	1.5965	0.00061661	-5.1206	-0.0019777	-3.5241	-0.0013611	386.22584108740074	22.597	0.072332	22.597	22.525	22.597	0	1428	46	0.7580582	0.027800858	0.7580582	309.05692	0	11.334259						57	4	2	NaN	NaN	NaN	0.82332	1	4364	4364		6.0903	0	1	5179.2	+		28563	8522	16451	16913	22817	22817					0.04548379757318344
VGSAAGFG	8	Unmodified	_VGSAAGFG_					0	0	0			REV__DSG3|p.T753S|1|0.53|ENSG00000134757|chr18:31474276-31474276|A/T|missense_variant	REV__DSG3|p.T753S|1|0.53|ENSG00000134757|chr18:31474276-31474276|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3253161416	1	665.325316	664.31804	2.4414	0.0016243	-3.8013	-0.0025291	-1.3599	-0.0009048	665.3243510283827	39.789	0.072346	39.794	39.77	39.842	0.0053368	759	46	1.1664921	0.0271492	1.1649727	238.45583	0	5.5498962						57	4	2	NaN	NaN	NaN	0.84887	1	2344	2344		0.32989	0	1	2612.6	+		28564	8333	16452	16914	22818	22818					-0.027546623250600533
VGSAREAP	8	Unmodified	_VGSAREAP_					0	0	0			REV__ENSG00000188986|ENST00000343053|NELFB	REV__ENSG00000188986|ENST00000343053|NELFB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.4104427545	1	786.410443	785.403166	1.5551	0.001223	4.6449	0.0036528	6.2	0.0048757	786.4141889961284	29.038	0.12066	29.031	28.982	29.103	-0.0077229	534	46	1.3016734	0.026929498	1.300154	265.26074	0	5.487793						103	6	2	NaN	NaN	NaN	0.65542	1	4486	4486		21.835	4.036	1	7160.5	+		28565	11075	16453	16915	22819	22819					0.0018808314075613453
VGSDIAVLR	9	Unmodified	_VGSDIAVLR_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	465.27436669705	2	465.274367	928.53418	1.2761	0.00059372	-0.47376	-0.00022043	0.80231	0.00037329	465.27411176481695	19.084	0.071943	19.084	19.06	19.132	0	1377	28	0.7895419	0.016653419	0.7895419	320.9343	0	6.769287						56	4	2	NaN	NaN	NaN	0.16939	1	6565	6565		27.296	8.1779	1	4772.3			28566	2168	16454	16916	22820	22820					0.06705473788804284
VGSDIAVLR	9	Unmodified	_VGSDIAVLR_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.27436669705	2	465.274367	928.53418	1.1554	0.00053757	-1.085	-0.00050483	0.070365	3.2739E-05	465.2735559836073	19.13	0.072111	19.116	19.092	19.164	-0.014141	1374	31	0.791392	0.018500745	0.7898726	321.68634	0	7.5202026						55	4	2	NaN	NaN	NaN	0.56377	1	6435	6435		6.9844	3.0159	1	5074.5			28567	2168	16454	16916	22821	22821					0.06705473788804284
VGSGRIAL	8	Unmodified	_VGSGRIAL_					0	0	0			REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	REV__ENST00000465814.5_1_11:72423956-72425365:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.4675637028998	1	772.467564	771.460287	-0.19588	-0.00015131	-0.14153	-0.00010933	-0.33741	-0.00026064	772.4675608548077	56.059	0.096046	56.058	56.034	56.13	-0.00056458	546	61	1.294491	0.035919428	1.2929716	263.879	0	7.3220825						86	5	2	NaN	NaN	NaN	0.84945	1	4301	4301		0	0	1	15247	+		28568	12298	16455	16917	22822	22822					0.06541550417114195
VGSLDIGVI	9	Unmodified	_VGSLDIGVI_					0	0	0			REV__tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	REV__tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5087598156002	1	872.50876	871.501483	1.9922	0.0017382	2.4276	0.0021181	4.4198	0.0038564	872.5110600343303	25.177	0.048286	25.165	25.165	25.214	-0.012011	378	37	1.3947657	0.021421194	1.3932463	283.74872	0	4.357849						46	3	2	NaN	NaN	NaN	0.66196	1	5548	5548		2.4615	0	1	3670.8	+		28569	13537	16456	16918	22823	22823					0.06059266665965879
VGSLLSLTL	9	Unmodified	_VGSLLSLTL_					0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5557100082	1	902.55571	901.548434	1.3713	0.0012376	1.2715	0.0011476	2.6427	0.0023852	902.5572546132003	32.225	0.072372	32.225	32.177	32.249	0	282	46	1.4517976	0.026689649	1.4517976	295.1982	0	5.4269104						90	4	2	NaN	NaN	NaN	0.10956	1	6118	6118		34.439	0	1	10680			28570	5050	16457	16919	22824	22824					0.09372126217078858
VGSLLSLTL	9	Unmodified						0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	902.55571	901.548434	1.1145	0.0010059	-2.1957	-0.0019817	-1.0812	-0.00097583	902.55225949457	31.958	0.072403	31.954	31.906	31.979	-0.0037613	282	91	1.4517976	0.053416252	1.4502782	295.19824		10.861267	-0.13515	-0.0020613	-0.00075972	NaN	34.439	100	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10857			28571	5050	16457	16919							0.09372126217078858
VGSVEFDSM	9	Unmodified	_VGSVEFDSM_					0	0	0		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4186241793001	1	970.418624	969.411348	2.0984	0.0020363	0.78484	0.00076162	2.8832	0.002798	970.4188369220016	23.441	0.096598	23.427	23.403	23.5	-0.013294	336	49	1.419741	0.028515935	1.4182216	288.37604	0	5.7921143						101	5	3	NaN	NaN	NaN	0.030669	1	7430	7430		58.235	34.901	1	6384.6			28572	2022	16458	16920	22825	22825					-0.07458150724778534
VGSVEFDSM	9	Oxidation (M)	_VGSVEFDSM(Oxidation (M))_		VGSVEFDSM(1)		VGSVEFDSM(67)	0	0	1		ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.4135388014001	1	986.413539	985.406262	2.0437	0.002016	0.013388	1.3206E-05	2.0571	0.0020292	986.4124316630634	19.37	0.072071	19.356	19.332	19.404	-0.014141	378	67	1.3947657	0.039276123	1.3932463	283.23865	0	7.9759216						104	4	2	NaN	NaN	NaN	0.023828	1	7877	7877		67.154	32.715	1	6698.3			28573	2022	16458	16921	22826	22826		227			-0.08702454587387365
VGTIMSSIIL	10	Unmodified	_VGTIMSSIIL_					0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.3017355405001	2	517.301736	1032.58892	1.1265	0.00058276	-4.9351	-0.0025529	-3.8086	-0.0019702	517.2987720944664	27.446	0.096481	27.436	27.411	27.508	-0.010126	1278	37	0.85049206	0.022121787	0.8489726	345.201	0	8.978851						80	5	2	NaN	NaN	NaN	0.29898	1	9692	9692		27.789	4.4544	1	8988.6	+		28574	8997	16459	16922	22827	22827					0.07392724545206875
VGTIMSSIIL	10	Unmodified						0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.301736	1032.58892	1.5787	0.00081665	-6.3068	-0.0032625	-4.7281	-0.0024459	517.2977822680664	27.422	0.072407	27.422	27.398	27.471	0	1278	43	0.85049206	0.025808692	0.85049206	345.20102		10.475342	-0.0066193	-0.00084062	0.00075972	NaN	27.789	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9304.6	+		28575	8997	16459	16922							0.07392724545206875
VGTIMSSIIL	10	Unmodified						0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	517.301736	1032.58892	1.1265	0.00058276	-4.9351	-0.0025529	-3.8086	-0.0019702	517.2987720944664	27.446	0.096481	27.436	27.411	27.508	-0.010126	1278	37	0.85049206	0.022121787	0.8489726	345.201		8.978851	0.0066193	0.00057856	-0.00075972	NaN	27.789	80	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8988.6	+		28576	8997	16459	16922							0.07392724545206875
VGTPSGGGG	9	Unmodified	_VGTPSGGGG_					0	0	0			REV__ENST00000296127.7_1_3:45000934-45017625:-|nuORF	REV__ENST00000296127.7_1_3:45000934-45017625:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3260444231003	1	688.326044	687.318768	1.4262	0.00098171	4.4633	0.0030722	5.8895	0.0040539	688.3290715331606	32.056	0.16892	32.056	32.008	32.177	0	1245	76	0.87076044	0.04600489	0.87076044	177.88174	0	9.3980255						108	8	2	NaN	NaN	NaN	0.6907	1	2975	2975		0	0	1	8715.9	+		28577	11633	16460	16923	22828	22828					-0.03739867675972164
VGVAAAAA	8	Unmodified	_VGVAAAAA_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.3617016478998	1	629.361702	628.354425	-0.5709	-0.0003593	-8.611	-0.0054194	-9.1819	-0.0057787	629.356733343999	52.785	0.19171	52.785	52.737	52.929	-0.00045776	696	118	1.2044523	0.0704447	1.2029328	246.49977	0	14.417007						225	9	2	NaN	NaN	NaN	0.84945	1	1290	1290		0	0	1	18646	+		28578	9303	16461	16924	22829	22829					0.025382145716434934
VGVGGACA	8	Unmodified	_VGVGGACA_					0	0	0			REV__ENST00000527160.1_1_11:614111-614513:-|nuORF	REV__ENST00000527160.1_1_11:614111-614513:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1548743380499	2	317.154874	632.295196	1.0041	0.00031847	-1.6421	-0.00052082	-0.63802	-0.00020235	317.1545171499683	40.32	0.07209	40.32	40.296	40.368	0	1536	112	0.69119483	0.06880653	0.69119483	282.86887	0	28.158844						225	4	3	NaN	NaN	NaN	0.84945	1	1517	1517		0	0	1	27645	+		28579	12629	16462	16925	22830	22830					-0.03566004714184601
VGVGPGGG	8	Unmodified	_VGVGPGGG_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.1402	0.00034224	4.2741	0.0012829	5.4143	0.0016252	300.16280087842284	41.617	0.14428	41.625	41.601	41.745	0.0082588	1512	43	0.7060759	0.026033461	0.70455647	289.30463	0	10.66684						128	7	3	NaN	NaN	NaN	0.84876	1	574	574		0.39566	0	1	13322			28580	5445	16463	16926	22831	22831					-0.007746449794694854
VGVGPGGG	8	Unmodified	_VGVGPGGG_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.2967	0.00038922	6.267	0.0018811	7.5637	0.0022703	300.1627314991156	41.761	0.048183	41.77	41.722	41.77	0.0089951	1512	34	0.7060759	0.020453751	0.70455647	289.3046	0	8.380646						52	3	2	NaN	NaN	NaN	0.84876	1	580	580		0.39566	0	1	7221.5			28581	5445	16463	16926	22832	22832					-0.007746449794694854
VGVGPGGG	8	Unmodified						0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	300.161014	598.307475	1.1288	0.00033882	4.8723	0.0014625	6.0011	0.0018013	300.1625983419168	41.498	0.1443	41.498	41.498	41.642	0	1518	46	0.7023569	0.027894557	0.7023569	287.7808		11.429382	-0.063464	0.00011232	-0.0010998	NaN	0.39566	160	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21852			28582	5445	16463	16926							-0.007746449794694854
VGVGQSEF	8	Unmodified	_VGVGQSEF_					0	0	0		ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	ENSG00000151611|ENST00000649156|MMAA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.3992093662	1	822.399209	821.391933	2.4102	0.0019821	4.0482	0.0033293	6.4584	0.0053114	822.4018043913419	30.077	0.28964	30.077	30.029	30.318	0	453	139	1.3500742	0.08245623	1.3500742	274.91693	0	16.79065						607	13	4	NaN	NaN	NaN	0.6053	1	5032	5032		24.961	0	1	107680			28583	3746	16464	16927	22833	22833					-0.02590738953381333
VGVKGWLT	8	Unmodified	_VGVKGWLT_					0	0	0		ENSG00000282872|ENST00000634842|C1orf232	ENSG00000282872|ENST00000634842|C1orf232	ENSG00000282872|ENST00000634842|C1orf232	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	859.5036148582	1	859.503615	858.496338	-0.31479	-0.00027057	1.7976	0.001545	1.4828	0.0012745	859.5043245131297	55.843	0.047958	55.842	55.818	55.866	-0.00059128	399	55	1.382264	0.03215897	1.3807446	281.27158	0	6.543915						80	3	2	NaN	NaN	NaN	0.84692	1	5386	5386		1.4396	0	1	7360.3			28584	6208	16465	16928	22834	22834					0.061430075939824746
VGVVAGAR	8	Unmodified	_VGVVAGAR_					0	0	0			REV__nc|nan|Q8N9P6|C9orf163	REV__nc|nan|Q8N9P6|C9orf163	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.4413489524001	1	728.441349	727.434072	1.4991	0.001092	-1.2891	-0.00093904	0.20998	0.00015296	728.4397987904626	53.626	0.072174	53.626	53.602	53.674	0	624	40	1.247731	0.023413777	1.247731	254.6159	0	4.777893						79	4	3	NaN	NaN	NaN	0.84727	1	3731	3731		1.2418	0	1	6657.1	+		28585	13264	16466	16929	22835	22835					0.05945281245658407
VGVVAHTG	8	Unmodified	_VGVVAHTG_					0	0	0			REV__ENSG00000111671|ENST00000524270|SPSB2	REV__ENSG00000111671|ENST00000524270|SPSB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.4097144730001	1	739.409714	738.402438	-0.26027	-0.00019244	8.4156	0.0062226	8.1553	0.0060301	739.4162103229685	55.026	0.095943	55.025	55.001	55.097	-0.0006218	483	76	1.3321642	0.044796467	1.3306447	271.7709	0	9.138794						130	5	2	NaN	NaN	NaN	0.84692	1	3818	3818		1.4396	0	1	21704	+		28586	9103	16467	16930	22836	22836					0.022772884917117153
VHANEIAQL	9	Unmodified	_VHANEIAQL_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.7694484946499	2	497.769448	993.524344	1.6352	0.00081394	-1.8517	-0.00092172	-0.21654	-0.00010779	497.76892291686283	17.594	0.095839	17.58	17.58	17.676	-0.013567	1236	52	0.876284	0.031303644	0.8747646	355.85345	0	12.712189						79	5	2	NaN	NaN	NaN	0.29681	1	8183	8183		19.118	5.0767	1	7501.9	+		28587	9657	16468	16931	22837	22837					0.027322857834064962
VHANEIAQL	9	Unmodified						0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	497.769448	993.524344	1.6352	0.00081394	-1.8517	-0.00092172	-0.21654	-0.00010779	497.76892291686283	17.594	0.095839	17.58	17.58	17.676	-0.013567	1236	52	0.876284	0.031303644	0.8747646	355.85345		12.712189	0.00364	9.4976E-05	-0.00075972	NaN	19.118	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7501.9	+		28588	9657	16468	16931							0.027322857834064962
VHARIGAA	8	Unmodified	_VHARIGAA_					0	0	0			REV__ENST00000354230.7_1_7:99698082-99698214:-|nuORF	REV__ENST00000354230.7_1_7:99698082-99698214:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	794.4631470270001	1	794.463147	793.455871	0.9635	0.00076547	2.6797	0.0021289	3.6432	0.0028944	794.4659447332273	33.358	0.19302	33.355	33.307	33.5	-0.0024796	609	58	1.2567334	0.034198165	1.255214	256.058	0	6.9678345						291	9	3	NaN	NaN	NaN	0.84692	1	4581	4581		1.4396	0	1	44928	+		28589	11810	16469	16932	22838	22838					0.050880859942253664
VHASWSPR	8	Unmodified	_VHASWSPR_					0	0	0			REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF	REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.24340091965	2	470.243401	938.472249	-0.20029	-9.4185E-05	-8.801	-0.0041386	-9.0013	-0.0042328	470.23992960214457	43.583	0.071968	43.594	43.594	43.666	0.01099	1404	46	0.77288127	0.027788818	0.7713618	314.1136	0	11.293884						78	4	2	NaN	NaN	NaN	0.82797	1	6647	6647		5.4659	0.55612	1	4542.9	+		28590	12776	16470	16933	22839	22839					0.0005516716032616387
VHASWSPR	8	Unmodified						0	0	0			REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF	REV__ENST00000558590.1_1_14:103395319-103397951:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	470.243401	938.472249	-0.20029	-9.4185E-05	-8.801	-0.0041386	-9.0013	-0.0042328	470.23992960214457	43.583	0.071968	43.594	43.594	43.666	0.01099	1404	46	0.77288127	0.027788818	0.7713618	314.1136		11.293884	-0.0074662	0.001259	0.0047983	NaN	5.4659	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4542.9	+		28591	12776	16470	16933							0.0005516716032616387
VHAYRLSR	8	Unmodified	_VHAYRLSR_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.28560008535	2	501.2856	1000.55665	1.7064	0.00085541	-6.6474	-0.0033323	-4.941	-0.0024768	501.2816218313958	15.99	0.14396	15.99	15.942	16.086	0	1281	46	0.84864825	0.027665615	0.84864825	344.5977	0	11.233765						138	7	2	NaN	NaN	NaN	0.81807	1	8621	8621		6.794	1.3281	1	13647			28592	3932	16471	16934	22840	22840					0.05639117977079877
VHDFQHVFD	9	Unmodified	_VHDFQHVFD_					0	0	0			REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.84544568369995	3	381.845446	1142.51451	2.0301	0.00077519	-2.7972	-0.0010681	-0.76707	-0.0002929	381.84401089214197	23.489	0.12064	23.476	23.427	23.548	-0.013294	1485	49	0.72280174	0.029726744	0.7212823	439.49826	0	18.075256						107	6	2	NaN	NaN	NaN	0.39244	1	14058	14058		8.9191	2.4892	1	9733.4	+		28593	13396	16472	16935	22841	22841					-0.05104902221955854
VHDFQHVFD	9	Unmodified						0	0	0			REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	REV__tr|U7SIT1|U7SIT1_FUSNUProbabledual-specificityRNAmethyltransferaseRlmNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rlmNPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	381.845446	1142.51451	2.0301	0.00077519	-2.7972	-0.0010681	-0.76707	-0.0002929	381.84401089214197	23.489	0.12064	23.476	23.427	23.548	-0.013294	1485	49	0.72280174	0.029726744	0.7212823	439.49826		18.075256	0.017263	0.00026809	0.00016909	NaN	8.9191	107	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9733.4	+		28594	13396	16472	16935							-0.05104902221955854
VHFDIPSIHI	10	Unmodified	_VHFDIPSIHI_					0	0	0		ENST00000580768.5_1_17:12888192-12893485:+|nuORF;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	ENST00000580768.5_1_17:12888192-12893485:+|nuORF	ENST00000580768.5_1_17:12888192-12893485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3218482059001	2	589.321848	1176.62914	1.6665	0.0009821	-3.2158	-0.0018952	-1.5493	-0.00091306	589.31920334593	25.37	0.16889	25.358	25.31	25.479	-0.012011	1164	85	0.9204082	0.051400423	0.91888875	372.97656	0	20.828949						233	8	2	NaN	NaN	NaN	0.64158	1	15145	15145		12.049	0.30984	1	57388			28595	353	16473	16936	22842	22842					0.04789407260000189
VHFPGSWG	8	Unmodified	_VHFPGSWG_					0	0	0			REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.71394498845007	2	443.713945	885.413337	2.1966	0.00097466	1.2771	0.00056666	3.4737	0.0015413	443.7145586732657	15.724	0.35943	15.711	15.567	15.927	-0.012611	1416	118	0.76547134	0.07221961	0.7639519	311.37088	0	29.37674						1240	16	4	NaN	NaN	NaN	0.59262	1	5753	5753		25.752	3.6255	1	501870	+		28596	12168	16474	16937	22843	22843					-0.033953091339981256
VHFPGSWG	8	Unmodified						0	0	0			REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	443.713945	885.413337	2.1966	0.00097466	1.2771	0.00056666	3.4737	0.0015413	443.7145586732657	15.724	0.35943	15.711	15.567	15.927	-0.012611	1416	118	0.76547134	0.07221961	0.7639519	311.37088		29.37674	0.040627	-0.00020568	-0.00075972	NaN	25.752	1240	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501870	+		28597	12168	16474	16937							-0.033953091339981256
VHGGAGGA	8	Unmodified	_VHGGAGGA_					0	0	0		ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	ENST00000582754.5_1_17:39081604-39092927:-|nuORF	ENST00000582754.5_1_17:39081604-39092927:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.3052494015	1	625.305249	624.297973	1.2979	0.00081156	-6.7435	-0.0042168	-5.4457	-0.0034052	625.3002545069684	24.598	0.096478	24.598	24.574	24.671	0	1167	79	0.91857195	0.047708333	0.91857195	188.0183	0	9.765198						140	5	2	NaN	NaN	NaN	0.84876	1	1224	1224		0.39566	0	1	13092		+	28598	224	16475	16938	22844	22844					-0.029204132650079373
VHGGAGRW	8	Unmodified	_VHGGAGRW_					0	0	0			REV__ENST00000485557.5_1_6:31939740-31939914:-|nuORF	REV__ENST00000485557.5_1_6:31939740-31939914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.4270958717	1	839.427096	838.419819	1.2811	0.0010754	-1.6899	-0.0014186	-0.40884	-0.00034319	839.4253143019264	21.489	0.19276	21.475	21.426	21.619	-0.014006	1332	52	0.8172735	0.03140533	0.81575406	166.36661	0	6.3929596						247	9	3	NaN	NaN	NaN	0.84945	1	5118	5118		0	0	1	40762	+		28599	12420	16476	16939	22845	22845					-0.005853711826375729
VHGGGGGG	8	Unmodified	_VHGGGGGG_					0	0	0		ENST00000601673.1_7:6523004-6523760:+|nuORF	ENST00000601673.1_7:6523004-6523760:+|nuORF	ENST00000601673.1_7:6523004-6523760:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.2739492731001	1	597.273949	596.266673	1.7026	0.0010169	-5.2981	-0.0031644	-3.5955	-0.0021475	597.2706423458424	16.323	0.16784	16.31	16.262	16.43	-0.012995	1245	52	0.87076044	0.03129685	0.869241	178.41122	0	6.4124603						117	8	2	NaN	NaN	NaN	0.84876	1	555	555		0.39566	0.39566	1	7937.2			28600	7770	16477	16940	22846	22846					-0.04760986299083925
VHGGGRTE	8	Unmodified	_VHGGGRTE_					0	0	0			REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.4009407007	1	812.400941	811.393664	1.1086	0.00090064	0.18997	0.00015433	1.2986	0.001055	812.4009409322877	32.417	0.16898	32.414	32.365	32.534	-0.0031052	504	76	1.3196158	0.044825077	1.3180964	268.76917	0	9.129639						303	8	4	NaN	NaN	NaN	0.84876	1	4808	4808		0.39566	0	1	33551	+		28601	12553	16478	16941	22847	22847					-0.019576851447709487
VHGGGRTE	8	Unmodified						0	0	0			REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	812.400941	811.393664	1.7049	0.0013851	-1.1293	-0.00091746	0.57562	0.00046763	812.4002375404269	32.418	0.193	32.418	32.37	32.563	0	507	79	1.3178225	0.0466305	1.3178225	268.4039		9.497345	0.0021038	-0.00055883	-0.00013697	NaN	0.39566	283	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32533	+		28602	12553	16478	16941							-0.019576851447709487
VHGGGRTE	8	Unmodified						0	0	0			REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	812.400941	811.393664	1.1086	0.00090064	0.18997	0.00015433	1.2986	0.001055	812.4009409322877	32.417	0.16898	32.414	32.365	32.534	-0.0031052	504	76	1.3196158	0.044825077	1.3180964	268.76917		9.129639	-0.0021038	0.00051296	0.00013697	NaN	0.39566	303	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33551	+		28603	12553	16478	16941							-0.019576851447709487
VHGGNAAA	8	Unmodified	_VHGGNAAA_					0	0	0			REV__nc|ENSG00000132466|O75179-5|ANKRD17	REV__nc|ENSG00000132466|O75179-5|ANKRD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.3423631892999	1	696.342363	695.335087	0.50004	0.0003482	-6.1436	-0.004278	-5.6435	-0.0039298	696.3377349845043	31.284	0.12064	31.284	31.235	31.356	0	675	58	1.2170867	0.034293532	1.2170867	248.57446	0	7.003998						100	6	2	NaN	NaN	NaN	0.84945	1	3147	3147		0	0	1	7657.1	+		28604	9536	16479	16942	22848	22848					-0.024767417192492758
VHGGNAAA	8	Unmodified	_VHGGNAAA_					0	0	0			REV__nc|ENSG00000132466|O75179-5|ANKRD17	REV__nc|ENSG00000132466|O75179-5|ANKRD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3423631892999	1	696.342363	695.335087	0.79016	0.00055022	-5.5154	-0.0038406	-4.7252	-0.0032904	696.338851164339	31.283	0.096556	31.277	31.229	31.326	-0.0050716	681	61	1.2134778	0.036100388	1.2119584	247.83739	0	7.3730316						89	5	2	NaN	NaN	NaN	0.84945	1	3081	3081		0	0	1	7784.2	+		28605	9536	16479	16942	22849	22849					-0.024767417192492758
VHGGNAAA	8	Unmodified						0	0	0			REV__nc|ENSG00000132466|O75179-5|ANKRD17	REV__nc|ENSG00000132466|O75179-5|ANKRD17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	696.342363	695.335087	0.50004	0.0003482	-6.1436	-0.004278	-5.6435	-0.0039298	696.3377349845043	31.284	0.12064	31.284	31.235	31.356	0	675	58	1.2170867	0.034293532	1.2170867	248.57446		7.003998	0.0030445	-0.00021424	0.0025642	NaN	0	100	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7657.1	+		28606	9536	16479	16942							-0.024767417192492758
VHGGNAAA	8	Unmodified						0	0	0			REV__nc|ENSG00000132466|O75179-5|ANKRD17	REV__nc|ENSG00000132466|O75179-5|ANKRD17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	696.342363	695.335087	0.79016	0.00055022	-5.5154	-0.0038406	-4.7252	-0.0032904	696.338851164339	31.283	0.096556	31.277	31.229	31.326	-0.0050716	681	61	1.2134778	0.036100388	1.2119584	247.83739		7.3730316	-0.0030445	0.00022317	-0.0025642	NaN	0	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7784.2	+		28607	9536	16479	16942							-0.024767417192492758
VHGGPVGG	8	Unmodified	_VHGGPVGG_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3521995941002	1	679.3522	678.344923	-0.42028	-0.00028551	4.2538	0.0028898	3.8335	0.0026043	679.3559794444589	53.36	0.14389	53.36	53.312	53.456	-0.00053787	693	130	1.2062578	0.07761991	1.2047384	246.48186	0	15.860535						415	7	3	NaN	NaN	NaN	0.84945	1	2720	2720		0	0	1	70729			28608	4660	16480	16943	22850	22850					-0.007115537138474792
VHGPDWHL	8	Unmodified	_VHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.P750A|1|0.36|ENSG00000124942|chr11:62532169-62532169|G/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	480.737951401	2	480.737951	959.46135	1.5182	0.00072984	-2.9057	-0.0013969	-1.3875	-0.00066704	480.7362439949174	20.742	0.21698	20.742	20.694	20.911	0	1503	67	0.711653	0.040887594	0.711653	289.1379	0	16.612244						321	10	4	NaN	NaN	NaN	0.044274	1	7311	7311		81.001	33.68	1	65501			28609	2444	16481	16944	22851	22851					-0.020002352139613322
VHGPDWHL	8	Unmodified	_VHGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.P750A|1|0.36|ENSG00000124942|chr11:62532169-62532169|G/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.737951401	2	480.737951	959.46135	1.4891	0.00071588	-1.8236	-0.0008767	-0.33452	-0.00016081	480.7368904311055	20.742	0.16854	20.728	20.704	20.873	-0.014088	1503	67	0.711653	0.040887594	0.71013355	289.1379	0	16.612213						266	8	3	NaN	NaN	NaN	0.14214	1	7170	7170		55.947	14.487	1	64041			28610	2444	16481	16944	22852	22852					-0.020002352139613322
VHGVYYLPF	9	Unmodified	_VHGVYYLPF_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7871099315499	2	547.78711	1093.55967	1.6164	0.00088543	-3.5875	-0.0019652	-1.9712	-0.0010798	547.7865125520227	21.946	0.16867	21.946	21.898	22.067	0	1263	100	0.85970795	0.060798764	0.85970795	348.68552	0	24.659119						240	8	2	NaN	NaN	NaN	0.48931	1	12560	12560		10.052	1.8067	1	41658	+		28611	10905	16482	16945	22853	22853					0.01662948311195578
VHGVYYLPF	9	Unmodified						0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.78711	1093.55967	1.6164	0.00088543	-3.5875	-0.0019652	-1.9712	-0.0010798	547.7865125520227	21.946	0.16867	21.946	21.898	22.067	0	1263	100	0.85970795	0.060798764	0.85970795	348.68552		24.659119	-0.0049775	-0.0016824	0.00075972	NaN	10.052	240	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41658	+		28612	10905	16482	16945							0.01662948311195578
VHGVYYLPF	9	Unmodified						0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.78711	1093.55967	1.277	0.00069951	-0.68291	-0.00037409	0.59407	0.00032542	547.7873462520139	21.97	0.16856	21.956	21.86	22.028	-0.013895	1263	103	0.85970795	0.062624216	0.8581885	348.68552		25.399475	0.0049775	0.0014998	-0.00075972	NaN	10.052	286	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45854	+		28613	10905	16482	16945							0.01662948311195578
VHHYGHGSGGI	11	Unmodified	_VHHYGHGSGGI_					0	0	0		ENSG00000203797|ENST00000368924|DDO;nc|ENSG00000203797|Q99489-3|DDO;nc|ENSG00000203797|Q99489-2|DDO;nc|ENSG00000203797|Q99489-4|DDO	ENSG00000203797|ENST00000368924|DDO	ENSG00000203797|ENST00000368924|DDO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.1809398041667	3	374.18094	1119.52099	2.1684	0.00081136	-4.2591	-0.0015937	-2.0907	-0.00078232	374.17972123468485	15.558	0.048009	15.558	15.51	15.558	0	1422	172	0.7617651	0.105677724	0.7617651	463.3031	0	64.27289						390	3	5	NaN	NaN	NaN	0.40602	1	13642	13642		11.561	0	1	645610			28614	5855	16483	16946	22854	22854					-0.033989642705591905
VHISGGGS	8	Unmodified	_VHISGGGS_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	713.3576789025001	1	713.357679	712.350402	1.4626	0.0010434	-9.1076	-0.006497	-7.645	-0.0054536	713.3505808618166	29.98	0.16899	29.98	29.932	30.101	0	627	52	1.24593	0.030624509	1.24593	254.34793	0	6.251816						151	8	2	NaN	NaN	NaN	0.82332	1	3467	3467		6.0903	2.937	1	13969	+		28615	10766	16484	16947	22855	22855					-0.01727874922050887
VHISGGGS	8	Unmodified	_VHISGGGS_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	713.3576789025001	1	713.357679	712.350402	0.85411	0.00060929	-10.287	-0.0073383	-9.4329	-0.0067291	713.3502815361256	29.979	0.16891	29.973	29.925	30.094	-0.0064087	624	61	1.247731	0.036026955	1.2462115	254.7156	0	7.354645						145	8	2	NaN	NaN	NaN	0.82332	1	3402	3402		6.0903	3.3051	1	15151	+		28616	10766	16484	16947	22856	22856					-0.01727874922050887
VHISGGGS	8	Unmodified						0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	713.357679	712.350402	1.4626	0.0010434	-9.1076	-0.006497	-7.645	-0.0054536	713.3505808618166	29.98	0.16899	29.98	29.932	30.101	0	627	52	1.24593	0.030624509	1.24593	254.34793		6.251816	0.003666	0.00042641	-0.00014081	NaN	6.0903	151	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13969	+		28617	10766	16484	16947							-0.01727874922050887
VHISGGGS	8	Unmodified						0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	713.357679	712.350402	0.85411	0.00060929	-10.287	-0.0073383	-9.4329	-0.0067291	713.3502815361256	29.979	0.16891	29.973	29.925	30.094	-0.0064087	624	61	1.247731	0.036026955	1.2462115	254.7156		7.354645	-0.003666	-0.00041496	0.00014081	NaN	6.0903	145	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15151	+		28618	10766	16484	16947							-0.01727874922050887
VHKIKAVII	9	Unmodified	_VHKIKAVII_					0	0	0		ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1020.6928126121	1	1020.69281	1019.68554	1.6946	0.0017297	-2.0412	-0.0020834	-0.34662	-0.00035379	1020.6907085922684	39.911	0.19263	39.911	39.839	40.032	0	288	49	1.4482387	0.028470516	1.4482387	293.96115	0	5.7789						242	9	3	NaN	NaN	NaN	0.68748	1	9370	9370		0.27539	0	1	22873			28619	3618	16485	16948	22857	22857					0.17648079887305812
VHKIKAVII	9	Unmodified						0	0	0		ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	ENSG00000148156|ENST00000374667|ACTL7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1020.69281	1019.68554	1.4598	0.00149	-2.2952	-0.0023427	-0.83538	-0.00085267	1020.6898355545668	39.885	0.14463	39.891	39.819	39.963	0.0060463	285	49	1.4500183	0.028470516	1.4484988	294.32236		5.7789	-0.01005	-0.00012527	0.00013003	NaN	0.27539	229	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22398			28620	3618	16485	16948							0.17648079887305812
VHLCVVFSH	9	Unmodified	_VHLCVVFSH_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5345974106	1	1040.5346	1039.52732	1.1209	0.0011663	0.35036	0.00036457	1.4713	0.0015309	1041.5413329850753	32.008	0.072412	32.008	31.983	32.056	0	111	79	1.5529068	0.04600513	1.5529068	315.1262	0	9.335663						89	4	2	NaN	NaN	NaN	0.42773	1	10196	10196		12.588	1.4175	1	7710	+		28621	9538	16486	16949	22858	22858					0.009138376365854128
VHLFNSFPN	9	Unmodified	_VHLFNSFPN_					0	0	0			REV__nc|ENSG00000120802|P42167-2|TMPO	REV__nc|ENSG00000120802|P42167-2|TMPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7719911836001	2	537.771991	1073.52943	1.8092	0.00097291	4.9805	0.0026784	6.7896	0.0036513	538.2744288479219	15.462	0.16815	15.462	15.438	15.606	0	1497	49	0.71537006	0.029733181	0.71537006	290.2114	0	12.062164						223	8	3	NaN	NaN	NaN	0.67312	1	11711	11711		1.5054	0.57954	1	25224	+		28622	9323	16487	16950	22859	22859					-0.004394103539425487
VHLQGEFPH	9	Unmodified	_VHLQGEFPH_					0	0	0		ENST00000506396.1_1_5:31249548-31249821:+|nuORF	ENST00000506396.1_1_5:31249548-31249821:+|nuORF	ENST00000506396.1_1_5:31249548-31249821:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.2696156701501	2	532.269616	1062.52468	1.3651	0.0007266	-8.9426	-0.0047599	-7.5775	-0.0040333	532.2650003813778	15.676	0.21578	15.663	15.591	15.807	-0.012611	1389	43	0.7821392	0.025912344	0.78061974	317.34	0	10.513489						220	10	3	NaN	NaN	NaN	0.65818	1	10968	10968		2.7852	0.32367	1	30947			28623	7335	16488	16951	22860	22860					-0.004082944967194635
VHLQSKKTF	9	Unmodified	_VHLQSKKTF_					0	0	0			REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.31656586275	2	544.316566	1086.61858	2.2226	0.0012098	6.7853	0.0036934	9.0079	0.0049032	544.3202068639253	16.203	0.095934	16.19	16.118	16.214	-0.012993	1212	34	0.8910048	0.020233393	0.88948536	361.40775	0	8.207031						68	5	2	NaN	NaN	NaN	0.53317	1	11944	11944		8.2448	0.65722	1	7209.6	+		28624	9430	16489	16952	22861	22861					0.07873424605554646
VHLSPNKQGH	10	Unmodified	_VHLSPNKQGH_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.5908667361	1	1116.59087	1115.58359	1.1312	0.0012631	1.9109	0.0021337	3.0421	0.0033968	1116.5927215160843	31.234	0.072414	31.229	31.205	31.277	-0.0050716	78	55	1.5723488	0.031799078	1.5708294	318.7865	0	6.447113						95	4	2	NaN	NaN	NaN	0.70677	1	13117	13117		7.5876	0	1	9173.6			28625	5712	16490	16953	22862	22862					0.03042181797604826
VHPHLSVAVP	10	Unmodified	_VHPHLSVAVP_					0	0	0			REV__ENST00000372546.8_1_9:131852014-131852224:+|nuORF	REV__ENST00000372546.8_1_9:131852014-131852224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.5380644805333	3	352.538064	1054.59236	2.3143	0.00081587	-1.844	-0.00065007	0.47032	0.00016581	352.5374836298088	15.652	0.43142	15.639	15.471	15.903	-0.012611	1458	49	0.7395112	0.02969122	0.73799175	450.10434	0	18.071594						428	19	2	NaN	NaN	NaN	0.11208	1	10625	10625		28.495	0	1	110490	+		28626	11912	16491	16954	22863	22863					0.06725155434082808
VHPPPLDS	8	Unmodified	_VHPPPLDS_					0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	431.2268851882	2	431.226885	860.439217	1.2453	0.00053699	-8.4909	-0.0036615	-7.2456	-0.0031245	431.22379125967217	34.998	0.048279	34.998	34.974	35.022	-4.5776E-05	1440	43	0.7506418	0.025962949	0.7491224	305.47397	0	10.565643						57	3	2	NaN	NaN	NaN	0.81807	1	5400	5400		6.794	0	1	4779.2			28627	8035	16492	16955	22864	22864					0.0034154031761772785
VHPPPLDS	8	Unmodified						0	0	0		nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-2|ZSWIM8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	431.226885	860.439217	0.58925	0.0002541	-8.9091	-0.0038419	-8.3199	-0.0035877	431.22357271468684	34.999	0.072395	34.999	34.999	35.072	0	1443	49	0.7487872	0.029678345	0.7487872	304.71924		12.077637	0.00074486	-0.00019359	-0.00016758	NaN	6.794	73	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7227.5			28628	8035	16492	16955							0.0034154031761772785
VHRGHKNAF	9	Unmodified	_VHRGHKNAF_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.2886740905501	2	533.288674	1064.5628	1.8558	0.00098968	-9.332	-0.0049766	-7.4762	-0.003987	533.2838658765486	19.324	0.14403	19.324	19.228	19.372	0	1275	43	0.85233563	0.025808692	0.85233563	345.81256	0	10.471222						100	7	2	NaN	NaN	NaN	0.62619	1	11334	11334		4.4131	0.44458	1	9060.4	+		28629	10783	16493	16956	22865	22865					0.03309636208609845
VHRGHKNAF	9	Unmodified						0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	533.288674	1064.5628	1.8558	0.00098968	-9.332	-0.0049766	-7.4762	-0.003987	533.2838658765486	19.324	0.14403	19.324	19.228	19.372	0	1275	43	0.85233563	0.025808692	0.85233563	345.81256		10.471222	0	0	0	NaN	4.4131	100	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9060.4	+		28630	10783	16493	16956							0.03309636208609845
VHSASGPW	8	Unmodified	_VHSASGPW_					0	0	0		ENST00000506326.1_1_3:134085404-134085665:-|nuORF	ENST00000506326.1_1_3:134085404-134085665:-|nuORF	ENST00000506326.1_1_3:134085404-134085665:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.3998780682001	1	840.399878	839.392602	1.5687	0.0013183	-8.2401	-0.006925	-6.6714	-0.0056066	840.3930091590287	29.087	0.26542	29.087	29.039	29.305	0	468	64	1.3411216	0.03761697	1.3411216	272.9976	0	7.6572876						306	12	3	NaN	NaN	NaN	0.80071	1	5259	5259		9.1232	0.83292	1	43246			28631	7334	16494	16957	22866	22866					-0.033518995136660124
VHSGRMLI	8	Unmodified	_VHSGRMLI_					0	0	0		ENST00000517608.5_1_8:74706120-74706228:-|nuORF	ENST00000517608.5_1_8:74706120-74706228:-|nuORF	ENST00000517608.5_1_8:74706120-74706228:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5083826601002	1	912.508383	911.501106	1.2735	0.0011621	1.523	0.0013897	2.7965	0.0025518	912.5095606848654	41.642	0.16831	41.642	41.618	41.786	0	396	37	1.3840506	0.021437168	1.3840506	281.37683	0	4.3581543						82	8	2	NaN	NaN	NaN	0.80692	1	6259	6259		8.2903	0	1	4923.9			28632	7378	16495	16958	22867	22867					0.04181568465116925
VHTAETNV	8	Unmodified	_VHTAETNV_					0	0	0		ENST00000263640.7_1_2:158593781-158593970:-|nuORF	ENST00000263640.7_1_2:158593781-158593970:-|nuORF	ENST00000263640.7_1_2:158593781-158593970:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.71942429685004	2	435.719424	869.424296	2.0727	0.0009031	-4.6869	-0.0020422	-2.6142	-0.0011391	435.71768851251875	18.94	0.23993	18.94	18.892	19.132	0	1356	130	0.8024889	0.07960945	0.8024889	326.5202	0	32.391846						768	11	5	NaN	NaN	NaN	0.49126	1	5652	5652		31.561	0	1	574470			28633	6319	16496	16959	22868	22868					-0.015639515503721668
VHTAETNV	8	Unmodified						0	0	0		ENST00000263640.7_1_2:158593781-158593970:-|nuORF	ENST00000263640.7_1_2:158593781-158593970:-|nuORF	ENST00000263640.7_1_2:158593781-158593970:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	435.719424	869.424296	1.8056	0.00078675	-4.2762	-0.0018632	-2.4706	-0.0010765	435.71789770332947	19.058	0.24028	19.044	18.972	19.212	-0.014059	1401	112	0.77473325	0.068493724	0.7732138	315.22684		27.869019	0.051772	0.00014229	-0.014638	NaN	31.561	859	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444160			28634	6319	16496	16959							-0.015639515503721668
VHTTETIR	8	Unmodified	_VHTTETIR_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76475094-76487566:-|nuORF;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.76162346255	2	478.761623	955.508694	1.6513	0.00079056	-1.4887	-0.00071275	0.16253	7.7815E-05	478.7610792187503	55.893	0.21623	55.893	55.749	55.965	0	1359	67	0.8006399	0.040679634	0.8006399	325.31146	0	16.528717						283	10	3	NaN	NaN	NaN	0.84207	1	7225	7225		3.5732	1.3969	1	22095			28635	5519	16497	16960	22869	22869					0.029159992663721823
VHVCTAGG	8	Unmodified	_VHVCTAGG_					0	0	0		ENST00000394886.6_1_5:137523684-137523744:-|nuORF	ENST00000394886.6_1_5:137523684-137523744:-|nuORF	ENST00000394886.6_1_5:137523684-137523744:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3504850346001	1	743.350485	742.343209	1.337	0.00099389	-11.182	-0.0083124	-9.8453	-0.0073185	743.3417792093355	28.314	0.096508	28.305	28.281	28.378	-0.0089779	606	79	1.2585332	0.04681015	1.2570138	256.7249	0	9.548676						140	5	3	NaN	NaN	NaN	0.84207	1	3866	3866		3.5732	0.41988	1	13484			28636	6779	16498	16961	22870	22870					-0.038269307941277475
VHVRLHRE	8	Unmodified	_VHVRLHRE_					0	0	0			REV__ENST00000305097.5_1_3:152553477-152553909:+|nuORF	REV__ENST00000305097.5_1_3:152553477-152553909:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.6013718429	1	1045.60137	1044.5941	1.9708	0.0020606	-0.74427	-0.00077821	1.2265	0.0012824	1045.6004908320185	47.492	0.16777	47.492	47.42	47.588	0	183	40	1.510409	0.023045301	1.510409	306.4828	0	4.6762085						95	8	2	NaN	NaN	NaN	0.84727	1	10423	10423		1.2418	0	1	5568.1	+		28637	11673	16499	16962	22871	22871					0.0735820924271593
VIAAVHGG	8	Unmodified	_VIAAVHGG_					0	0	0		ENST00000600178.5_1_19:39307593-39308076:-|nuORF;ENSG00000104823|ENST00000221418|ECH1;ENST00000598707.5_1_19:39306922-39322412:-|nuORF	ENST00000600178.5_1_19:39307593-39308076:-|nuORF;ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4147998509002	1	723.4148	722.407523	-0.28278	-0.00020457	7.9253	0.0057333	7.6426	0.0055287	723.4196079888516	55.05	0.071976	55.049	55.001	55.073	-0.0006218	489	85	1.3285799	0.050201416	1.3270605	271.14902	0	10.245575						99	4	2	NaN	NaN	NaN	0.84876	1	3566	3566		0.39566	0	1	7320.6			28638	7767;1493	16500	16963	22872	22872					0.03521592354343284
VIAKNKFG	8	Unmodified	_VIAKNKFG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	876.5301639597002	1	876.530164	875.522887	-0.58822	-0.00051559	3.0799	0.0026996	2.4917	0.002184	876.5333714691399	56.515	0.33564	56.514	56.346	56.682	-0.00056458	372	43	1.3983358	0.024988651	1.3968164	284.45474	0	5.0832825						172	15	2	NaN	NaN	NaN	0.84651	1	5612	5612		1.6704	0	1	13452			28639	3883	16501	16964	22873	22873					0.0801469648533839
VIAPPDFVL	9	Unmodified	_VIAPPDFVL_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;ENST00000512411.5_1_4:8368690-8375449:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5607953861	1	970.560795	969.553519	0.83191	0.00080742	1.1886	0.0011536	2.0205	0.001961	970.5620077964562	32.32	0.096546	32.316	32.268	32.365	-0.0037613	279	94	1.4535767	0.055105925	1.4520572	295.2481	0	11.193054						280	5	4	NaN	NaN	NaN	0.056143	1	7458	7458		44.302	12.741	1	25117			28640	997	16502	16965	22874	22874					0.06752430079700389
VIATGGGS	8	Unmodified	_VIATGGGS_					0	0	0		tr|U7SJV6|U7SJV6_FUSNUShikimatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroKPE=3SV=1	tr|U7SJV6|U7SJV6_FUSNUShikimatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroKPE=3SV=1	tr|U7SJV6|U7SJV6_FUSNUShikimatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroKPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.3515308921002	1	661.351531	660.344254	1.5736	0.0010407	5.9991	0.0039675	7.5727	0.0050082	661.355318363886	58.437	0.09594	58.437	58.413	58.509	0	546	55	1.294491	0.032334447	1.294491	264.6536	0	6.6106567						124	5	3	NaN	NaN	NaN	0.84887	1	2309	2309		0.32989	0	1	13646			28641	13750	16503	16966	22875	22875					0.0004960684644856883
VICKEFWLT	9	Unmodified	_VICKEFWLT_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.801902716	2	569.801903	1137.58925	1.5421	0.00087872	-8.7895	-0.0050083	-7.2474	-0.0041296	569.7970492411554	23.248	0.16888	23.234	23.186	23.355	-0.013294	1218	82	0.8873258	0.04966384	0.8858064	359.71356	0	20.13324						272	8	2	NaN	NaN	NaN	0.21199	1	13903	13903		24.562	0.16177	1	46044	+		28642	8823	16504	16967	22876	22876					0.025961442650441313
VICKEFWLT	9	Unmodified						0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	569.801903	1137.58925	2.1703	0.0012366	-8.6933	-0.0049535	-6.523	-0.0037168	569.797791804252	23.224	0.21699	23.224	23.176	23.393	0	1224	79	0.883646	0.047827005	0.883646	358.22183		19.38861	-0.0051417	4.141E-05	-0.0010802	NaN	24.562	376	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45758	+		28643	8823	16504	16967							0.025961442650441313
VICKEFWLT	9	Unmodified						0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.801903	1137.58925	1.5421	0.00087872	-8.7895	-0.0050083	-7.2474	-0.0041296	569.7970492411554	23.248	0.16888	23.234	23.186	23.355	-0.013294	1218	82	0.8873258	0.04966384	0.8858064	359.71356		20.13324	0.0051417	-6.8205E-05	0.0010802	NaN	24.562	272	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46044	+		28644	8823	16504	16967							0.025961442650441313
VICPGSDL	8	Unmodified	_VICPGSDL_					0	0	0			REV__ENSG00000173389|ENST00000310914|IQCF1	REV__ENSG00000173389|ENST00000310914|IQCF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3967665252	1	803.396767	802.38949	1.3078	0.0010507	-5.3962	-0.0043353	-4.0884	-0.0032846	803.3923390256168	32.899	0.14478	32.897	32.873	33.018	-0.0024757	519	52	1.310647	0.030500531	1.3091276	266.99234	0	6.213257						138	7	2	NaN	NaN	NaN	0.80071	1	4684	4684		9.1232	2.26	1	14256	+		28645	10674	16505	16968	22877	22877					-0.01960910682703343
VIENPTEAL	9	Unmodified	_VIENPTEAL_					0	0	0		nc|ENSG00000115290|Q14449-2|GRB14;ENSG00000115290|ENST00000263915|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.263664625	2	493.263665	984.512776	1.5696	0.00077424	-1.7035	-0.00084025	-0.13383	-6.6014E-05	493.2626912942933	15.676	0.31156	15.663	15.591	15.903	-0.012611	1332	58	0.8172735	0.035103858	0.81575406	331.93112	0	14.257263						392	14	4	NaN	NaN	NaN	0.13999	1	7859	7859		30.035	2.9889	1	111070			28646	2012	16506	16969	22878	22878					0.01990043969431099
VIEVEKAL	8	Unmodified	_VIEVEKAL_					0	0	0			REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	0.98046	0.00088294	0.028512	2.5677E-05	1.009	0.00090862	900.5398268980374	31.284	0.024136	31.284	31.259	31.284	0	321	103	1.4286518	0.060602903	1.4286518	290.5017	0	12.322968						106	2	2	NaN	NaN	NaN	0.57691	1	6068	6068		26.732	0.61661	1	40937	+		28647	8453	16507	16970	22879	22879					0.07899839700041866
VIEVEKAL	8	Unmodified						0	0	0			REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.54006	899.532783	0.98046	0.00088294	0.028512	2.5677E-05	1.009	0.00090862	900.5398268980374	31.284	0.024136	31.284	31.259	31.284	0	321	103	1.4286518	0.060602903	1.4286518	290.5017		12.322968	0.051316	0.00012596	0.0016506	NaN	26.732	106	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40937	+		28648	8453	16507	16970							0.07899839700041866
VIEVEKAL	8	Unmodified						0	0	0			REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	REV__ENST00000572221.5_1_16:67909733-67911757:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.54006	899.532783	1.3547	0.00122	-0.31405	-0.00028282	1.0407	0.00093718	900.5401289767449	31.186	0.02413	31.181	31.181	31.205	-0.0050716	324	127	1.42687	0.0748862	1.4253505	290.1394		15.227356	-0.051316	-0.00018254	-0.0016506	NaN	26.732	125	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69432	+		28649	8453	16507	16970							0.07899839700041866
VIGESTCFASR	11	Unmodified	_VIGESTCFASR_					0	0	0			REV__KIAA1549|p.R237C|1|0.25|ENSG00000122778|chr7:138918917-138918917|G/A|missense_variant	REV__KIAA1549|p.R237C|1|0.25|ENSG00000122778|chr7:138918917-138918917|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.5254957687667	3	390.525496	1168.55466	2.173	0.00084862	-2.4814	-0.00096905	-0.30838	-0.00012043	390.52406782443273	11.164	0.19167	11.164	11.092	11.284	0	1476	49	0.72837335	0.02971059	0.72837335	442.76855	0	18.060669						154	9	2	NaN	NaN	NaN	0.57257	1	15436	15436		8.4563	0	1	17189	+		28650	13026	16508	16971	22880	22880					-0.022877236136764623
VIGGAGKQ	8	Unmodified	_VIGGAGKQ_					0	0	0		ENST00000530018.5_1_11:77888841-77889027:-|nuORF	ENST00000530018.5_1_11:77888841-77889027:-|nuORF	ENST00000530018.5_1_11:77888841-77889027:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.4253645372	1	729.425365	728.418088	1.4007	0.0010217	5.0629	0.003693	6.4636	0.0047147	729.4293984871382	27.808	0.096514	27.808	27.784	27.881	0	600	49	1.2621325	0.028793812	1.2621325	257.54828	0	5.8756256						102	5	2	NaN	NaN	NaN	0.84207	1	3743	3743		3.5732	0.41988	1	10440			28651	7448	16509	16972	22881	22881					0.04301575008753389
VIHLCYVWYQ	10	Unmodified	_VIHLCYVWYQ_					0	0	0			REV__ENST00000254579.10_1_11:6519677-6519737:+|nuORF	REV__ENST00000254579.10_1_11:6519677-6519737:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.3313586472001	2	662.331359	1322.64816	2.3639	0.0015657	0.54996	0.00036426	2.9139	0.00193	662.3311268544294	25.515	0.096516	25.503	25.455	25.552	-0.0116	1101	55	0.95892316	0.032986104	0.9574037	388.0864	0	13.3498535						89	5	2	NaN	NaN	NaN	0.77318	1	18290	18290		2.1763	0.47414	1	8551.2	+		28652	11513	16510	16973	22882	22882					-0.0002537944060350128
VIHPDVVV	8	Unmodified	_VIHPDVVV_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.26072800555005	2	439.260728	876.506903	1.0856	0.00047688	-1.3031	-0.00057239	-0.21744	-9.5515E-05	439.26010149714654	22.524	0.072401	22.511	22.486	22.559	-0.013733	1395	46	0.7784366	0.027767718	0.77691716	316.6939	0	11.296814						97	4	2	NaN	NaN	NaN	0.50567	1	5634	5634		30.791	5.0393	1	9654.3			28653	721	16511	16974	22883	22883					0.06370990248433372
VIHPDVVV	8	Unmodified						0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	439.260728	876.506903	1.2161	0.00053419	-5.7252	-0.0025149	-4.5091	-0.0019807	439.2578539470025	22.501	0.072247	22.501	22.453	22.525	0	1398	49	0.77658504	0.029620469	0.77658504	315.94064		12.050598	-0.0048896	-0.0023491	-0.00016607	NaN	30.791	124	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14072			28654	721	16511	16974							0.06370990248433372
VIISVTAVV	9	Unmodified	_VIISVTAVV_					0	0	0		ENST00000461696.1_1_3:15838399-15838555:-|nuORF	ENST00000461696.1_1_3:15838399-15838555:-|nuORF	ENST00000461696.1_1_3:15838399-15838555:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.79186095845	2	450.791861	899.569169	1.156	0.00052111	-0.63633	-0.00028685	0.51965	0.00023426	450.79105215963295	55.701	0.048183	55.701	55.677	55.725	0	1305	49	0.83389086	0.029527605	0.83389086	339.12042	0	12.008057						95	3	3	NaN	NaN	NaN	0.55027	1	6078	6078		7.5404	1.45	1	7391.4			28655	7081	16512	16975	22884	22884					0.11536716596754104
VIKVAVHM	8	Unmodified	_VIKVAVHM_					0	0	0			REV__ENST00000519132.5_1_5:178032378-178044013:-|nuORF	REV__ENST00000519132.5_1_5:178032378-178044013:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5386201560001	1	896.53862	895.531344	1.7849	0.0016002	-7.1956	-0.0064511	-5.4107	-0.0048509	896.532389702065	55.701	0.072319	55.701	55.677	55.749	0	228	61	1.4837929	0.03551638	1.4837929	301.73444	0	7.2223816						95	4	2	NaN	NaN	NaN	0.84692	1	6001	6001		1.4396	0	1	12585	+		28656	9142	16513	16976	22885	22885					0.07939927130291835
VILGHCYY	8	Unmodified	_VILGHCYY_					0	0	0		nc|ENSG00000148848|O43184-2|ADAM12;nc|ENSG00000148848|O43184|ADAM12	nc|ENSG00000148848|O43184-2|ADAM12	nc|ENSG00000148848|O43184-2|ADAM12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	484.23893831845	2	484.238938	966.463324	1.0058	0.00048704	-8.0548	-0.0039004	-7.049	-0.0034134	484.2350704809876	31.211	0.14479	31.211	31.187	31.332	0	1281	34	0.84864825	0.020283759	0.84864825	344.7625	0	8.240265						70	7	2	NaN	NaN	NaN	0.84651	1	7520	7520		1.6704	0	1	5876.1			28657	7957	16514	16977	22886	22886					-0.021249425203677674
VILGPSQP	8	Unmodified	_VILGPSQP_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	810.4719803788	1	810.47198	809.464704	1.4454	0.0011715	4.8201	0.0039065	6.2655	0.005078	810.4754990964765	33.647	0.048225	33.645	33.621	33.67	-0.0018463	450	40	1.3518641	0.023266912	1.3503447	275.34814	0	4.738983						50	3	2	NaN	NaN	NaN	0.83849	1	4789	4789		4.0537	0	1	3742.2			28658	541	16515	16978	22887	22887					0.05235014840036456
VIPADMVLL	9	Unmodified	_VIPADMVLL_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	970.5641662045001	1	970.564166	969.55689	1.5033	0.001459	-4.076	-0.003956	-2.5727	-0.002497	970.5616628557415	32.321	0.096561	32.321	32.273	32.37	0	276	97	1.4553556	0.056892633	1.4553556	295.60944	0	11.555939						244	5	3	NaN	NaN	NaN	0.14301	1	7597	7597		29.598	2.8668	1	23778			28659	3508	16516	16979	22888	22888					0.07089356862070417
VIPATYYLW	9	Unmodified	_VIPATYYLW_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1125.5979091739	1	1125.59791	1124.59063	1.7518	0.0019718	-0.74246	-0.00083572	1.0093	0.0011361	1125.59756150228	32.949	0.28962	32.949	32.78	33.069	0	66	85	1.579413	0.049470544	1.579413	320.18738	0	10.028961						490	13	3	NaN	NaN	NaN	0.03623	1	13874	13874		52.758	2.9254	1	66008			28660	475	16517	16980	22889	22889					0.03332101625483119
VIPDPPLLL	9	Unmodified	_VIPDPPLLL_					0	0	0			REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.6077455787002	1	976.607746	975.600469	1.5439	0.0015077	-1.5954	-0.0015581	-0.05159	-5.0383E-05	976.6069719933702	34.276	0.048241	34.276	34.252	34.3	0	225	67	1.4855686	0.039051414	1.4855686	301.72006	0	7.9313965						94	3	2	NaN	NaN	NaN	0.66196	1	7779	7779		2.4615	0	1	7282.4	+		28661	8667	16518	16981	22890	22890					0.11169289630868207
VIPDPPLLL	9	Unmodified						0	0	0			REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	976.607746	975.600469	1.5439	0.0015077	-1.5954	-0.0015581	-0.05159	-5.0383E-05	976.6069719933702	34.276	0.048241	34.276	34.252	34.3	0	225	67	1.4855686	0.039051414	1.4855686	301.72006		7.9313965	0	0	0	NaN	2.4615	94	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7282.4	+		28662	8667	16518	16981							0.11169289630868207
VIQENEHAL	9	Unmodified	_VIQENEHAL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.77218814885	2	526.772188	1051.52982	1.4998	0.00079006	-2.2779	-0.0011999	-0.77804	-0.00040985	526.7711241885153	15.174	0.12013	15.174	15.15	15.27	0	1290	88	0.84311575	0.053452313	0.84311575	342.12595	0	21.690247						289	6	2	NaN	NaN	NaN	0.089764	1	10690	10690		37.302	12.341	1	45179			28663	1932	16519	16982	22891	22891					0.006119645752278302
VIQENEHAL	9	Unmodified	_VIQENEHAL_					0	0	0		ENST00000462668.5_1_3:160131924-160151594:+|nuORF;ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENST00000462668.5_1_3:160131924-160151594:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.77218814885	2	526.772188	1051.52982	1.1416	0.00060138	-2.0923	-0.0011021	-0.95062	-0.00050076	526.7712597763334	15.172	0.14408	15.16	15.136	15.28	-0.012202	1290	91	0.84311575	0.055298448	0.8415963	342.12595	0	22.439423						355	7	3	NaN	NaN	NaN	0.10363	1	10474	10474		35.296	16.133	1	44384			28664	1932	16519	16982	22892	22892					0.006119645752278302
VISLSPIVLL	10	Unmodified	_VISLSPIVLL_					0	0	0		ENST00000469154.5_1_7:150936191-150937662:-|nuORF;ENST00000470588.1_1_7:150937509-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	ENST00000469154.5_1_7:150936191-150937662:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.3495430128501	2	527.349543	1052.68453	1.1946	0.00062997	-10.011	-0.0052791	-8.816	-0.0046491	527.3447257224083	21.681	0.19247	21.667	21.595	21.788	-0.013895	1191	64	0.90387505	0.03861493	0.9023556	366.77615	0	15.66922						171	9	2	NaN	NaN	NaN	0.47025	1	10538	10538		20.449	10.703	1	17161			28665	7137	16520	16983	22893	22893					0.1602982072774921
VITVLASQS	9	Unmodified	_VITVLASQS_					0	0	0			REV__ENSG00000122025|ENST00000241453|FLT3	REV__ENSG00000122025|ENST00000241453|FLT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	917.5302235392	1	917.530224	916.522947	1.9497	0.0017889	1.6661	0.0015287	3.6158	0.0033176	917.5316793060139	57.069	0.072102	57.069	57.021	57.093	0	342	34	1.4161754	0.019616127	1.4161754	287.8843	0	3.9876404						51	4	2	NaN	NaN	NaN	0.66529	1	6360	6360		2.1763	0.73677	1	2862.2	+		28666	9337	16521	16984	22894	22894					0.06134651694662807
VIVAGRGG	8	Unmodified	_VIVAGRGG_					0	0	0			REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	REV__tr|U7SQS9|U7SQS9_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01567PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.4413489524001	1	728.441349	727.434072	-0.040095	-2.9207E-05	-2.2706	-0.001654	-2.3106	-0.0016832	728.4398222728116	55.819	0.048012	55.818	55.794	55.842	-0.00059128	621	64	1.2495319	0.037806153	1.2480124	254.9834	0	7.7148285						71	3	2	NaN	NaN	NaN	0.84692	1	3643	3643		1.4396	0	1	5189.9	+		28667	13466	16522	16985	22895	22895					0.05945281245658407
VIVALPVII	9	Unmodified	_VIVALPVII_					0	0	0			REV__tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	REV__tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.6492164629	1	936.649216	935.64194	0.82754	0.00077512	-1.376	-0.0012889	-0.5485	-0.00051375	936.6474913208813	39.694	0.072296	39.694	39.694	39.767	0	246	43	1.4731345	0.02487731	1.4731345	299.3726	0	5.055603						67	4	2	NaN	NaN	NaN	0.48931	1	6747	6747		10.052	0	1	4668.3	+		28668	13382	16523	16986	22896	22896					0.17154470390164533
VIVEDPHLK	9	Unmodified	_VIVEDPHLK_					0	0	0			REV__ENSG00000144815|ENST00000273347|NXPE3	REV__ENSG00000144815|ENST00000273347|NXPE3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3031241365	2	525.303124	1048.5917	0.066279	3.4817E-05	-2.5852	-0.001358	-2.5189	-0.0013232	525.3018091553688	54.497	0.09642	54.497	54.497	54.593	-0.00061798	1281	31	0.84864825	0.018438756	0.8471288	344.38345	0	7.4825134						55	5	2	NaN	NaN	NaN	0.67818	1	10360	10360		1.072	0	1	3681.2	+		28669	9913	16524	16987	22897	22897					0.06934315994340068
VIVILIAIA	9	Unmodified	_VIVILIAIA_					0	0	0		ENSG00000184602|ENST00000329565|SNN	ENSG00000184602|ENST00000329565|SNN	ENSG00000184602|ENST00000329565|SNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.6492164628999	1	924.649216	923.64194	1.9891	0.0018393	-3.8024	-0.0035159	-1.8133	-0.0016766	924.645915742355	57.981	0.0961	57.981	57.957	58.053	0	228	109	1.4837929	0.063977	1.4837929	301.59543	0	13.003967						206	5	4	NaN	NaN	NaN	0.6907	1	6488	6488		0	0	1	50103			28670	5361	16525	16988	22898	22898					0.17706470390157847
VIVILIAIA	9	Unmodified	_VIVILIAIA_					0	0	0		ENSG00000184602|ENST00000329565|SNN	ENSG00000184602|ENST00000329565|SNN	ENSG00000184602|ENST00000329565|SNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.6492164628999	1	924.649216	923.64194	-0.69127	-0.00063919	-0.81835	-0.00075669	-1.5096	-0.0013959	924.6477586616722	57.979	0.096008	57.978	57.954	58.05	-0.00051117	222	115	1.4873441	0.067524195	1.4858247	302.31723	0	13.724945						190	5	3	NaN	NaN	NaN	0.6907	1	6363	6363		0	0	1	54176			28671	5361	16525	16988	22899	22899					0.17706470390157847
VIVRICPP	8	Unmodified	_VIVRICPP_					0	0	0			REV__ENSG00000164252|ENST00000312916|AGGF1	REV__ENSG00000164252|ENST00000312916|AGGF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.77294831129996	2	448.772948	895.531344	1.2536	0.00056259	-7.3118	-0.0032813	-6.0582	-0.0027187	448.77070550112387	41.231	0.048183	41.239	41.191	41.239	0.0074959	1398	31	0.77658504	0.018516839	0.7750656	315.83716	0	7.530792						45	3	2	NaN	NaN	NaN	0.84876	1	5885	5885		0.39566	0	1	3605.1	+		28672	10329	16526	16989	22900	22900					0.07939927130280466
VIYWLLGKFVT	11	Unmodified	_VIYWLLGKFVT_					0	0	0			REV__nc|ENSG00000261832|Q13286-5|CLN3	REV__nc|ENSG00000261832|Q13286-5|CLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	446.93219149436663	3	446.932191	1337.77475	1.7066	0.00076273	1.4751	0.00065927	3.1817	0.001422	447.2675452959198	21.537	0.14457	21.523	21.475	21.619	-0.014004	1401	31	0.77473325	0.018516839	0.7732138	470.25558	0	11.239532						62	7	2	NaN	NaN	NaN	0.77356	1	18515	18515		1.3696	0.26755	1	4624.3	+		28673	11060	16527	16990	22901	22901					0.11936870056160842
VKAAAAAAA	9	Unmodified	_VKAAAAAAA_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1;ENST00000395374.1_1_8:133816039-133823376:+|nuORF;ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	nc|ENSG00000129292|A8MW92-2|PHF20L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.4410146013998	1	743.441015	742.433738	1.6441	0.0012223	-7.5548	-0.0056166	-5.9108	-0.0043943	743.4361975245594	58.437	0.071995	58.437	58.389	58.461	0	570	43	1.2801172	0.025159717	1.2801172	261.12717	0	5.1322327						67	4	2	NaN	NaN	NaN	0.6907	1	3959	3959		0	0	1	4972.2			28674	2599;4109	16528	16991	22902	22902					0.05221861525785698
VKAAAAAAA	9	Unmodified	_VKAAAAAAA_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1;ENST00000395374.1_1_8:133816039-133823376:+|nuORF;ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	nc|ENSG00000129292|A8MW92-2|PHF20L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.4410146013998	1	743.441015	742.433738	-0.012388	-9.2097E-06	-5.2182	-0.0038794	-5.2306	-0.0038886	743.4364264272077	58.434	0.071976	58.434	58.386	58.458	-0.00048447	564	55	1.2837118	0.0323447	1.2821923	261.8604	0	6.5979004						92	4	2	NaN	NaN	NaN	0.6907	1	3878	3878		0	0	1	7187			28675	2599;4109	16528	16991	22903	22903					0.05221861525785698
VKAAPGPK	8	Unmodified	_VKAAPGPK_					0	0	0		ENST00000578046.1_2_19:5687695-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L;ENST00000581423.1_1_19:5687386-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;ENSG00000167733|ENST00000339423|HSD11B1L	ENST00000578046.1_2_19:5687695-5687953:+|nuORF	ENST00000578046.1_2_19:5687695-5687953:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4774001077001	1	767.4774	766.470124	-0.21877	-0.0001679	3.2256	0.0024756	3.0068	0.0023077	767.478749225761	56.203	0.28798	56.202	56.034	56.322	-0.00056458	468	79	1.3411216	0.046590805	1.3396021	273.4156	0	9.498505						310	13	2	NaN	NaN	NaN	0.84727	1	4244	4244		1.2418	0	1	32802			28676	4566	16529	16992	22904	22904					0.07754738422511309
VKAKGGGG	8	Unmodified	_VKAKGGGG_					0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF;REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3991497867001	1	673.39915	672.391873	0.57992	0.00039052	4.0792	0.0027469	4.6591	0.0031374	673.4015581931332	40.104	0.096161	40.104	40.056	40.152	0	687	55	1.2098682	0.032500625	1.2098682	247.26286	0	6.642227						98	5	2	NaN	NaN	NaN	0.84945	1	2655	2655		0	0	1	9788.6	+		28677	12199;13209	16530	16993	22905	22905					0.042573058372909145
VKAKGGGG	8	Unmodified	_VKAKGGGG_					0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF;REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3991497867001	1	673.39915	672.391873	0.85258	0.00057413	1.3852	0.00093281	2.2378	0.0015069	673.4002388853189	40.078	0.12031	40.084	40.036	40.156	0.0060463	687	43	1.2098682	0.025270224	1.2083488	247.26288	0	5.1645203						110	6	2	NaN	NaN	NaN	0.84945	1	2578	2578		0	0	1	11872	+		28678	12199;13209	16530	16993	22906	22906					0.042573058372909145
VKAKGGGG	8	Unmodified						0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF;REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	673.39915	672.391873	0.57992	0.00039052	4.0792	0.0027469	4.6591	0.0031374	673.4015581931332	40.104	0.096161	40.104	40.056	40.152	0	687	55	1.2098682	0.032500625	1.2098682	247.26286		6.642227	0.0099283	0.00066695	0.00075972	NaN	0	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9788.6	+		28679	12199;13209	16530	16993							0.042573058372909145
VKAKGGGG	8	Unmodified						0	0	0			REV__ENST00000443451.6_1_12:124809950-124819187:-|nuORF;REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	REV__nc|ENSG00000196498|Q9Y618-2|NCOR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	673.39915	672.391873	0.85258	0.00057413	1.3852	0.00093281	2.2378	0.0015069	673.4002388853189	40.078	0.12031	40.084	40.036	40.156	0.0060463	687	43	1.2098682	0.025270224	1.2083488	247.26288		5.1645203	-0.0099283	-0.0011472	-0.00075972	NaN	0	110	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11872	+		28680	12199;13209	16530	16993							0.042573058372909145
VKAQRQNL	8	Unmodified	_VKAQRQNL_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.78543290985004	2	478.785433	955.556313	1.6321	0.00078143	1.8553	0.00088831	3.4875	0.0016697	478.78626522642406	19.42	0.11997	19.42	19.372	19.492	0	1317	67	0.8265074	0.04061365	0.8265074	335.8215	0	16.501892						184	6	3	NaN	NaN	NaN	0.76633	1	7241	7241		13.737	0	1	20605			28681	3141	16531	16994	22907	22907					0.07675698257230579
VKARGGGP	8	Unmodified	_VKARGGGP_					0	0	0			REV__nc|ENSG00000047849|P27816-2|MAP4	REV__nc|ENSG00000047849|P27816-2|MAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.4365979255002	1	741.436598	740.429321	0.059739	4.4293E-05	1.8694	0.0013861	1.9292	0.0014304	741.4375221313824	56.947	0.047932	56.946	56.922	56.97	-0.00056458	564	43	1.2837118	0.025159717	1.2821923	261.87323	0	5.1325073						65	3	2	NaN	NaN	NaN	0.84887	1	3850	3850		0.32989	0	1	6109.4	+		28682	8476	16532	16995	22908	22908					0.04872397102906234
VKCGGGGG	8	Unmodified	_VKCGGGGG_					0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.2977211826002	1	634.297721	633.290445	1.7567	0.0011142	3.3818	0.0021451	5.1385	0.0032593	634.299540433223	24.96	0.072418	24.96	24.912	24.985	0	1104	37	0.9570911	0.021990776	0.9570911	195.843	0	4.499817						52	4	2	NaN	NaN	NaN	0.84945	1	1553	1553		0	0	1	3790.9			28683	644	16533	16996	22909	22909					-0.04086888856920723
VKCGGGGG	8	Unmodified	_VKCGGGGG_					0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.2977211826002	1	634.297721	633.290445	1.9404	0.0012308	6.1052	0.0038725	8.0455	0.0051033	634.301530707146	18.94	0.12	18.94	18.916	19.036	0	1404	97	0.77288127	0.059266686	0.77288127	158.1494	0	12.127335						162	6	2	NaN	NaN	NaN	0.84945	1	1555	1555		0	0	1	15544			28684	644	16533	16996	22910	22910					-0.04086888856920723
VKCGGGGG	8	Unmodified	_VKCGGGGG_					0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.65249882460006	2	317.652499	633.290445	0.95289	0.00030269	8.7692	0.0027856	9.7221	0.0030883	317.6561243321622	40.224	0.07222	40.224	40.2	40.272	0	1503	115	0.711653	0.07065469	0.711653	291.23157	0	28.914215						174	4	2	NaN	NaN	NaN	0.84887	1	1557	1557		0.32989	0	1	14925			28685	644	16533	16996	22911	22911					-0.04086888856920723
VKCGGGGG	8	Unmodified	_VKCGGGGG_					0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.2977211826002	1	634.297721	633.290445	1.3795	0.00087503	2.3523	0.0014921	3.7318	0.0023671	634.2992123035074	26.794	0.048246	26.783	26.783	26.832	-0.010645	753	88	1.1701111	0.052488565	1.1685916	239.43184	0	10.740387						87	3	2	NaN	NaN	NaN	0.84945	1	1477	1477		0	0	1	8660.1			28686	644	16533	16996	22912	22912					-0.04086888856920723
VKCGGGGG	8	Unmodified						0	0	0		ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	ENSG00000061455|ENST00000407847|PRDM6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	634.297721	633.290445	1.4865	0.0009429	7.4328	0.0047146	8.9193	0.0056575	634.3021957130748	24.719	0.096466	24.707	24.658	24.755	-0.012392	1104	67	0.9570911	0.040333807	0.95557165	195.84299		8.25322	-0.12693	0.0010083	-0.00075972	NaN	0	91	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8408.9			28687	644	16533	16996							-0.04086888856920723
VKCLLCKKLF	10	Unmodified	_VKCLLCKKLF_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.8586977009	2	597.858698	1193.70284	0.95877	0.00057321	-5.9529	-0.003559	-4.9941	-0.0029858	597.8548363935024	31.911	0.26548	31.911	31.863	32.128	0	1122	127	0.9460945	0.076951146	0.9460945	383.32187	0	31.177704						689	12	3	NaN	NaN	NaN	0.77928	1	16275	16275		0.69115	0	1	72248	+		28688	9798	16534	16997	22913	22913					0.113739161064359
VKDMVELV	8	Unmodified	_VKDMVELV_					0	0	0			REV__nc|ENSG00000135426|A2RU30-2|TESPA1	REV__nc|ENSG00000135426|A2RU30-2|TESPA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.5121306340002	1	932.512131	931.504854	1.1954	0.0011147	-0.63283	-0.00059012	0.56258	0.00052461	932.51194471458	28.097	0.16896	28.088	28.04	28.209	-0.0089798	309	85	1.435777	0.049876332	1.4342575	291.79953	0	10.136597						334	8	4	NaN	NaN	NaN	0.73961	1	6501	6501		16.584	5.9792	1	60092	+		28689	9617	16535	16998	22914	22914					0.03636193448312497
VKDMVEYK	8	Unmodified	_VKDMVEYK_					0	0	0		ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.26261038	2	506.26261	1010.51067	0.93418	0.00047294	-4.0607	-0.0020558	-3.1265	-0.0015828	506.26075634375906	29.497	0.21715	29.49	29.393	29.61	-0.0070648	1317	79	0.8265074	0.048003137	0.82498795	335.5624	0	19.489288						347	10	3	NaN	NaN	NaN	0.72013	1	8822	8822		17.799	2.6236	1	41358			28690	896	16536	16999	22915	22915					0.005832919599697561
VKENGGGG	8	Unmodified	_VKENGGGG_					0	0	0			REV__ENST00000509255.1_1_5:134109490-134113463:+|nuORF	REV__ENST00000509255.1_1_5:134109490-134113463:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.1799349956001	2	359.179935	716.345317	1.809	0.00064975	4.0469	0.0014536	5.8559	0.0021033	359.1812840296454	28.435	0.048283	28.426	28.402	28.45	-0.0089798	1587	34	0.65952945	0.020509422	0.65801	269.2412	0	8.372589						45	3	2	NaN	NaN	NaN	0.84727	1	3465	3465		1.2418	0	1	5210.6	+		28691	12550	16537	17000	22916	22916					-0.024201787846436673
VKGASGKG	8	Unmodified	_VKGASGKG_					0	0	0		ENST00000358215.8_1_2:220363644-220363875:+|nuORF	ENST00000358215.8_1_2:220363644-220363875:+|nuORF	ENST00000358215.8_1_2:220363644-220363875:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.4097144730002	1	703.409714	702.402438	1.5187	0.0010683	4.3462	0.0030572	5.865	0.0041255	703.4123509242984	37.359	0.072227	37.362	37.314	37.386	0.0028229	672	34	1.2188909	0.019841313	1.2173715	248.89452	0	4.0515594						43	4	2	NaN	NaN	NaN	0.84945	1	3204	3204		0	0	1	2806			28692	6584	16538	17001	22917	22917					0.039332884917257616
VKGASGKG	8	Unmodified						0	0	0		ENST00000358215.8_1_2:220363644-220363875:+|nuORF	ENST00000358215.8_1_2:220363644-220363875:+|nuORF	ENST00000358215.8_1_2:220363644-220363875:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	703.409714	702.402438	0.61656	0.0004337	1.9184	0.0013494	2.535	0.0017831	703.4110744592203	37.362	0.072182	37.362	37.338	37.41	0	672	40	1.2188909	0.023453832	1.2188909	248.89453		4.7892303	-0.0002214	-0.00077218	0.00075972	NaN	0	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4471.7			28693	6584	16538	17001							0.039332884917257616
VKGDDEAI	8	Unmodified	_VKGDDEAI_					0	0	0			REV__ENST00000534225.1_1_11:112024279-112034806:-|nuORF	REV__ENST00000534225.1_1_11:112024279-112034806:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.4203387388001	1	846.420339	845.413062	1.8852	0.0015957	-0.2547	-0.00021558	1.6305	0.0013801	846.4209665176893	21.248	0.09621	21.234	21.234	21.33	-0.014004	471	31	1.3393306	0.017910004	1.3378111	272.60168	0	3.6453247						51	5	2	NaN	NaN	NaN	0.78967	1	5196	5196		10.605	0	1	2749.9	+		28694	12664	16539	17002	22918	22918					-0.0158277364452033
VKGKSGSG	8	Unmodified	_VKGKSGSG_					0	0	0			REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	360.20595278085005	2	360.205953	718.397353	1.8551	0.00066822	-0.58931	-0.00021227	1.2658	0.00045595	360.20568842642626	28.001	0.1689	28.001	27.929	28.098	0	1356	85	0.8024889	0.05176294	0.8024889	327.58438	0	21.130157						293	8	3	NaN	NaN	NaN	0.84945	1	3568	3568		0	0	1	54552	+		28695	12337	16540	17003	22919	22919					0.02688984629105562
VKGKSGSG	8	Unmodified	_VKGKSGSG_					0	0	0			REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	360.20595278085005	2	360.205953	718.397353	1.4027	0.00050527	-1.1273	-0.00040607	0.2754	9.9202E-05	360.2055757412368	28.025	0.19304	28.016	27.919	28.112	-0.0089779	1356	88	0.8024889	0.053614497	0.8009695	327.5844	0	21.885986						263	9	3	NaN	NaN	NaN	0.84945	1	3502	3502		0	0	1	44580	+		28696	12337	16540	17003	22920	22920					0.02688984629105562
VKGKSGSG	8	Unmodified						0	0	0			REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	360.205953	718.397353	1.8551	0.00066822	-0.58931	-0.00021227	1.2658	0.00045595	360.20568842642626	28.001	0.1689	28.001	27.929	28.098	0	1356	85	0.8024889	0.05176294	0.8024889	327.58438		21.130157	-0.0072032	0.00016154	0.00075972	NaN	0	293	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54552	+		28697	12337	16540	17003							0.02688984629105562
VKGKSGSG	8	Unmodified						0	0	0			REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	REV__ENST00000473395.1_1_2:198365100-198366019:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	360.205953	718.397353	1.4027	0.00050527	-1.1273	-0.00040607	0.2754	9.9202E-05	360.2055757412368	28.025	0.19304	28.016	27.919	28.112	-0.0089779	1356	88	0.8024889	0.053614497	0.8009695	327.5844		21.885986	0.0072032	-0.00022605	-0.00075972	NaN	0	263	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44580	+		28698	12337	16540	17003							0.02688984629105562
VKGRPPARC	9	Unmodified	_VKGRPPARC_					0	0	0		ENST00000560763.5_2_14:103800597-103802258:+|nuORF	ENST00000560763.5_2_14:103800597-103802258:+|nuORF	ENST00000560763.5_2_14:103800597-103802258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.2820031514	2	492.282003	982.549453	0.81619	0.00040179	0.82908	0.00040814	1.6453	0.00080993	492.2822841209432	35.144	0.048302	35.144	35.12	35.168	0	1326	31	0.8209676	0.018470705	0.8209676	333.44064	0	7.502014						50	3	2	NaN	NaN	NaN	0.55027	1	7977	7977		7.5404	0.55601	1	4504.4			28699	7595	16541	17004	22921	22921					0.05748062104999008
VKIAPGAVVC	10	Unmodified	_VKIAPGAVVC_					0	0	0		ENST00000522540.5_1_8:30013899-30034753:+|nuORF;ENSG00000104671|ENST00000221114|DCTN6	ENST00000522540.5_1_8:30013899-30034753:+|nuORF	ENST00000522540.5_1_8:30013899-30034753:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.7835129976	2	478.783513	955.552473	1.5719	0.00075258	5.4865	0.0026268	7.0584	0.0033794	478.7860819695614	19.611	0.2407	19.597	19.5	19.741	-0.014141	1533	136	0.6930556	0.08364731	0.6915362	281.5982	0	33.98706						518	11	3	NaN	NaN	NaN	0.67523	1	7102	7102		9.746	3.4958	1	55367			28700	1484	16542	17005	22922	22922					0.0729189243915016
VKIIRNNEL	9	Unmodified	_VKIIRNNEL_					0	0	0		ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.83512275665	2	549.835123	1097.65569	1.559	0.00085718	-1.5285	-0.0008404	0.030528	1.6785E-05	549.8350495856794	26.577	0.14481	26.577	26.481	26.625	0	1197	94	0.9001988	0.057039917	0.9001988	365.09106	0	23.133514						315	7	3	NaN	NaN	NaN	0.074859	1	12763	12763		39.459	2.1564	1	58363			28701	1885	16543	17006	22923	22923					0.11077096151302612
VKKGGAAA	8	Unmodified	_VKKGGAAA_					0	0	0			REV__ENSG00000184897|ENST00000333762|H1-10	REV__ENSG00000184897|ENST00000333762|H1-10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.4304499151	1	701.43045	700.423173	-0.80208	-0.0005626	-3.4563	-0.0024243	-4.2584	-0.002987	701.4252053313126	56.371	0.14384	56.37	56.322	56.466	-0.00056458	504	88	1.3196158	0.052013636	1.3180964	269.47693	0	10.621643						344	7	4	NaN	NaN	NaN	0.84887	1	3168	3168		0.32989	0	1	27070	+		28702	10938	16544	17007	22924	22924					0.06097878871366902
VKKKAKKA	8	Unmodified	_VKKKAKKA_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.82128709989996	2	450.821287	899.628021	1.1928	0.00053774	-1.7429	-0.00078575	-0.55015	-0.00024802	450.82030959001514	55.701	0.096409	55.701	55.677	55.773	0	1272	61	0.854179	0.03687364	0.854179	347.37073	0	14.995453						142	5	2	NaN	NaN	NaN	0.84945	1	6081	6081		0	0	1	31507			28703	2426	16545	17008	22925	22925					0.17419237681735922
VKKKAKKA	8	Unmodified						0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	450.821287	899.628021	0.36957	0.00016661	2.2011	0.00099231	2.5707	0.0011589	450.82194259004905	55.698	0.048203	55.698	55.698	55.746	-0.00059128	1269	28	0.8560222	0.016590416	0.85450274	348.12027		6.7468567	-0.0013985	0.0029167	0.00016187	NaN	0	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2405.2			28704	2426	16545	17008							0.17419237681735922
VKKKEAFRKN	10	Unmodified	_VKKKEAFRKN_					0	0	0		tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1247.7582664154	1	1247.75827	1246.75099	1.7686	0.0022068	-4.4845	-0.0055956	-2.7159	-0.0033888	1247.753063917538	35.072	0.072388	35.072	35.023	35.096	0	897	142	1.0830421	0.08546114	1.0830421	219.29918	0	17.304565						111	4	2	NaN	NaN	NaN	0.78146	1	17702	17702		0.16111	0	1	7151			28705	13730	16546	17009	22926	22926					0.13748449342347158
VKKKEAFRKN	10	Unmodified						0	0	0		tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	tr|U7SGG9|U7SGG9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02302PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1247.75827	1246.75099	1.5831	0.0019753	-4.3681	-0.0054504	-2.785	-0.0034751	1247.7528224146192	34.998	0.072403	34.998	34.998	35.07	-4.5776E-05	909	97	1.0757661	0.058220744	1.0742466	217.8259		11.788788	-0.036943	7.8016E-05	-0.0043977	NaN	0.16111	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7534.5			28706	13730	16546	17009							0.13748449342347158
VKKKKKEKK	9	Unmodified	_VKKKKKEKK_					0	0	0			REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF	REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1143.7935892891999	1	1143.79359	1142.78631	1.3004	0.0014874	-2.7136	-0.0031038	-1.4132	-0.0016164	1143.7902044006055	53.713	0.20194	53.712	53.647	53.849	-0.00059128	192	1150	1.5050892	0.6892891	1.5035697	305.0611	0	139.70952						7667	8	4	NaN	NaN	NaN	0.6907	1	14083	14083		0	0	1	2219500	+		28707	11769	16547	17010	22927	22927					0.22063111870147623
VKKPKPKK	8	Unmodified	_VKKPKPKK_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.6665978616	1	952.666598	951.659321	1.5159	0.0014442	-3.5929	-0.0034228	-2.077	-0.0019787	952.6624944460928	45.742	0.16814	45.742	45.646	45.814	0	228	49	1.4837929	0.028416157	1.4837929	301.465	0	5.773346						145	8	2	NaN	NaN	NaN	0.84887	1	7136	7136		0.32989	0	1	11708	+		28708	9101	16548	17011	22928	22928					0.1815581071583665
VKKPKPKK	8	Unmodified						0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	952.666598	951.659321	1.5159	0.0014442	-3.5929	-0.0034228	-2.077	-0.0019787	952.6624944460928	45.742	0.16814	45.742	45.646	45.814	0	228	49	1.4837929	0.028416157	1.4837929	301.465		5.773346	0.031432	-0.0012722	-0.00012814	NaN	0.32989	145	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11708	+		28709	9101	16548	17011							0.1815581071583665
VKKPKPKK	8	Unmodified						0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	952.666598	951.659321	0.43928	0.00041848	-0.8802	-0.00083854	-0.44092	-0.00042005	952.6656030034005	45.668	0.16813	45.679	45.631	45.8	0.011349	225	43	1.4855686	0.024861455	1.4840492	301.82574		5.051178	-0.031432	0.0013121	0.00012814	NaN	0.32989	98	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5577.6	+		28710	9101	16548	17011							0.1815581071583665
VKKSLGAS	8	Unmodified	_VKKSLGAS_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.4828794161	1	789.482879	788.475603	1.9118	0.0015093	-6.3275	-0.0049955	-4.4158	-0.0034862	789.4778241252108	48.235	0.14393	48.235	48.163	48.307	0	375	43	1.3965509	0.024994016	1.3965509	284.5763	0	5.0930176						109	7	2	NaN	NaN	NaN	0.84887	1	4611	4611		0.32989	0	1	7020			28711	2759	16549	17012	22929	22929					0.07290417214323952
VKLDAAEDDD	10	Unmodified	_VKLDAAEDDD_					0	0	0		ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.7485756668	2	545.748576	1089.4826	0.89946	0.00049088	-9.8242	-0.0053616	-8.9248	-0.0048707	545.7446782821554	31.451	0.12069	31.447	31.423	31.544	-0.0044155	1275	40	0.85233563	0.023963928	0.8508162	345.71152	0	9.71991						105	6	3	NaN	NaN	NaN	0.72631	1	12047	12047		6.2502	0.78436	1	8697.4			28712	6880	16550	17013	22930	22930					-0.05856359486438123
VKMHIYGNF	9	Unmodified	_VKMHIYGNF_					0	0	0			REV__tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1	REV__tr|U7STZ8|U7STZ8_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01045PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1108.5608121611	1	1108.56081	1107.55354	1.9835	0.0021988	-3.5046	-0.0038851	-1.5212	-0.0016863	1108.5569027319211	28.098	0.1448	28.098	28.05	28.194	0	78	70	1.5723488	0.04062581	1.5723488	318.8148	0	8.237396						176	7	2	NaN	NaN	NaN	0.45297	1	13174	13174		11.548	0	1	21283	+		28713	13505	16551	17014	22931	22931					0.004061068080773111
VKPGLLPV	8	Unmodified	_VKPGLLPV_					0	0	0			REV__ENST00000336314.8_2_5:154195475-154195619:+|nuORF	REV__ENST00000336314.8_2_5:154195475-154195619:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	822.5447513914	1	822.544751	821.537475	-0.3407	-0.00028024	-2.2894	-0.0018832	-2.6301	-0.0021634	822.542860616162	55.698	0.24055	55.698	55.554	55.794	-0.00059128	405	64	1.3786905	0.037516832	1.377171	280.7433	0	7.6395874						200	11	2	NaN	NaN	NaN	0.84876	1	4928	4928		0.39566	0	1	22727	+		28714	11764	16552	17015	22932	22932					0.1195676863345625
VKPKLAAP	8	Unmodified	_VKPKLAAP_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	823.5400003645001	1	823.54	822.532724	2.185	0.0017994	-1.2831	-0.0010567	0.90189	0.00074274	823.5394746518123	58.197	0.047958	58.197	58.173	58.221	0	393	34	1.3858368	0.01965177	1.3858368	282.1929	0	4.001587						40	3	2	NaN	NaN	NaN	0.84876	1	5058	5058		0.39566	0	1	3048.2	+		28715	9515	16553	17016	22933	22933					0.1143588449069739
VKPKLAAP	8	Unmodified						0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	823.54	822.532724	2.185	0.0017994	-1.2831	-0.0010567	0.90189	0.00074274	823.5394746518123	58.197	0.047958	58.197	58.173	58.221	0	393	34	1.3858368	0.01965177	1.3858368	282.1929		4.001587	0.0014435	-0.0016125	0.0016529	NaN	0.39566	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3048.2	+		28716	9515	16553	17016							0.1143588449069739
VKPKLAAP	8	Unmodified						0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	823.54	822.532724	0.34422	0.00028348	3.5118	0.0028921	3.856	0.0031756	823.5436060240363	58.195	0.023964	58.194	58.17	58.194	-0.00048447	396	43	1.3840506	0.02500999	1.3825312	281.82913		5.092682	-0.0014435	0.0023363	-0.0016529	NaN	0.39566	42	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3379.6	+		28717	9515	16553	17016							0.1143588449069739
VKPKPGGI	8	Unmodified	_VKPKPGGI_					0	0	0			REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	795.5087002361003	1	795.5087	794.501424	1.9527	0.0015534	-1.0614	-0.00084434	0.89136	0.00070908	795.5075669551635	58.845	0.048069	58.845	58.82	58.869	0	432	64	1.3625998	0.037568927	1.3625998	277.62198	0	7.654419						110	3	3	NaN	NaN	NaN	0.84945	1	4684	4684		0	0	1	21851	+		28718	13288	16554	17017	22934	22934					0.09595311456621403
VKPKPGGI	8	Unmodified	_VKPKPGGI_					0	0	0			REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	795.5087002361003	1	795.5087	794.501424	-0.21295	-0.0001694	1.0588	0.00084226	0.84582	0.00067286	795.5096636943069	58.842	0.048035	58.842	58.818	58.866	-0.00045395	429	82	1.3643885	0.048307896	1.362869	277.9864	0	9.842468						115	3	3	NaN	NaN	NaN	0.84945	1	4598	4598		0	0	1	23238	+		28719	13288	16554	17017	22935	22935					0.09595311456621403
VKPKPGGI	8	Unmodified						0	0	0			REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	795.5087	794.501424	1.9527	0.0015534	-1.0614	-0.00084434	0.89136	0.00070908	795.5075669551635	58.845	0.048069	58.845	58.82	58.869	0	432	64	1.3625998	0.037568927	1.3625998	277.62198		7.654419	0.0013221	-0.00092148	-0.00013459	NaN	0	110	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21851	+		28720	13288	16554	17017							0.09595311456621403
VKPKPGGI	8	Unmodified						0	0	0			REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	REV__PAX5|p.S86P|1|0.43|ENSG00000196092|chr9:37015151-37015151|A/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	795.5087	794.501424	-0.21295	-0.0001694	1.0588	0.00084226	0.84582	0.00067286	795.5096636943069	58.842	0.048035	58.842	58.818	58.866	-0.00045395	429	82	1.3643885	0.048307896	1.362869	277.9864		9.842468	-0.0013221	0.00076512	0.00013459	NaN	0	115	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23238	+		28721	13288	16554	17017							0.09595311456621403
VKQLRPRT	8	Unmodified	_VKQLRPRT_					0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.31690021375	2	499.3169	996.619247	0.69041	0.00034473	-3.6356	-0.0018153	-2.9452	-0.0014706	499.31426987166327	58.314	0.024006	58.314	58.314	58.338	-0.00048447	1179	22	0.9112251	0.012860477	0.90970564	370.0271	0	5.222351						28	2	2	NaN	NaN	NaN	0.84727	1	8287	8287		1.2418	0.84618	1	1886.9	+		28722	9977	16555	17018	22936	22936					0.12080264045266631
VKQYRNNH	8	Unmodified	_VKQYRNNH_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.7781391940001	2	529.778139	1057.54173	2.0054	0.0010624	-5.5379	-0.0029339	-3.5325	-0.0018714	529.7753140543402	22.983	0.072201	22.983	22.959	23.031	0	1515	49	0.7042165	0.029746115	0.7042165	285.74136	0	12.069702						81	4	2	NaN	NaN	NaN	0.84727	1	10991	10991		1.2418	1.0494	1	6838.7	+		28723	10869	16556	17019	22937	22937					0.015256261091053602
VKRGKGGG	8	Unmodified	_VKRGKGGG_					0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.4631470270002	1	758.463147	757.455871	1.4836	0.0011252	2.5407	0.001927	4.0242	0.0030522	758.4648298446318	28.943	0.096571	28.943	28.918	29.015	0	510	40	1.316029	0.023318887	1.316029	268.35608	0	4.7550354						79	5	2	NaN	NaN	NaN	0.84945	1	4189	4189		0	0	1	6356.5	+		28724	11794	16557	17020	22938	22938					0.06744085994239413
VKRGKGGG	8	Unmodified	_VKRGKGGG_					0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.4631470270002	1	758.463147	757.455871	2.2974	0.0017425	4.9223	0.0037334	7.2198	0.0054759	758.4667438096595	25.636	0.048275	25.636	25.612	25.66	0	549	31	1.292695	0.017963529	1.292695	263.59796	0	3.663025						40	3	2	NaN	NaN	NaN	0.84945	1	4190	4190		0	0	1	2412.4	+		28725	11794	16557	17020	22939	22939					0.06744085994239413
VKRGKGGG	8	Unmodified	_VKRGKGGG_					0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.4631470270002	1	758.463147	757.455871	2.9736	0.0022554	2.5484	0.0019329	5.522	0.0041882	758.4645673518985	25.636	0.048231	25.624	25.6	25.648	-0.0116	549	46	1.292695	0.026941061	1.2911756	263.598	0	5.493622						46	3	2	NaN	NaN	NaN	0.84945	1	4112	4112		0	0	1	2930	+		28726	11794	16557	17020	22940	22940					0.06744085994239413
VKRGKGGG	8	Unmodified						0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	758.463147	757.455871	2.2974	0.0017425	4.9223	0.0037334	7.2198	0.0054759	758.4667438096595	25.636	0.048275	25.636	25.612	25.66	0	549	31	1.292695	0.017963529	1.292695	263.59796		3.663025	0.0059214	0.0010403	0.00075972	NaN	0	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2412.4	+		28727	11794	16557	17020							0.06744085994239413
VKRGKGGG	8	Unmodified						0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	758.463147	757.455871	2.9736	0.0022554	2.5484	0.0019329	5.522	0.0041882	758.4645673518985	25.636	0.048231	25.624	25.6	25.648	-0.0116	549	46	1.292695	0.026941061	1.2911756	263.598		5.493622	-0.0059214	-0.00076025	-0.00075972	NaN	0	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2930	+		28728	11794	16557	17020							0.06744085994239413
VKRKIMVI	8	Unmodified	_VKRKIMVI_					0	0	0			REV__ENSG00000115084|ENST00000245680|SLC35F5	REV__ENSG00000115084|ENST00000245680|SLC35F5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.6543186158002	1	986.654319	985.647042	2.2242	0.0021945	7.3547	0.0072566	9.5789	0.009451	986.6614790701318	58.988	0.072041	58.988	58.965	59.037	0	141	34	1.5352125	0.019475102	1.5352125	311.75845	0	3.954834						58	4	2	NaN	NaN	NaN	0.84876	1	8085	8085		0.39566	0.12027	1	3324.3	+		28729	9175	16558	17021	22941	22941					0.15364450981155642
VKSATAVI	8	Unmodified	_VKSATAVI_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	788.4876304430001	1	788.48763	787.480354	2.7864	0.002197	4.5178	0.0035623	7.3042	0.0057593	788.4920576859345	34.468	0.048222	34.467	34.443	34.491	-0.0006485	468	37	1.3411216	0.021491885	1.3396021	273.2873	0	4.3795166						38	3	2	NaN	NaN	NaN	0.81756	1	4506	4506		6.8632	0	1	1813.8	+		28730	8712	16559	17022	22942	22942					0.0781130135709418
VKSFLFPK	8	Unmodified	_VKSFLFPK_					0	0	0			REV__ENST00000558973.1_1_15:35623137-35703056:-|nuORF	REV__ENST00000558973.1_1_15:35623137-35703056:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.29457082289997	2	483.294571	964.574589	1.9823	0.00095804	-2.4193	-0.0011692	-0.43699	-0.00021119	483.29345203405586	22.139	0.048277	22.139	22.139	22.187	0	1488	34	0.7209441	0.020436049	0.7209441	292.89087	0	8.302338						46	3	2	NaN	NaN	NaN	0.84512	1	7476	7476		2.4615	0	1	3856.8	+		28731	12778	16560	17023	22943	22943					0.09088440179220925
VKSKIGEL	8	Unmodified	_VKSKIGEL_					0	0	0		nc|ENSG00000114107|Q8NHQ1-3|CEP70;ENST00000478673.5_1_3:138250446-138291769:-|nuORF;nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70	nc|ENSG00000114107|Q8NHQ1-3|CEP70	nc|ENSG00000114107|Q8NHQ1-3|CEP70	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	873.540394295	1	873.540394	872.533118	1.1865	0.0010365	4.6716	0.0040809	5.8582	0.0051173	873.544357296033	34.252	0.1207	34.252	34.203	34.324	0	354	55	1.4090419	0.032111168	1.4090419	286.64777	0	6.532501						129	6	2	NaN	NaN	NaN	0.43738	1	5706	5706		34.439	1.3018	1	12278			28732	1942	16561	17024	22944	22944					0.0917525941989652
VKVLPVPS	8	Unmodified	_VKVLPVPS_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.77347124005	2	419.773471	837.53239	1.9595	0.00082255	2.2938	0.00096287	4.2533	0.0017854	419.7742089799291	17.762	0.11985	17.748	17.724	17.844	-0.013786	1368	34	0.7950918	0.02034533	0.79357237	323.7017	0	8.283112						77	6	2	NaN	NaN	NaN	0.84887	1	5107	5107		0.32989	0	1	4958			28733	5504	16562	17025	22945	22945					0.10712464770847419
VKVPVVPL	8	Unmodified	_VKVPVVPL_					0	0	0			REV__PRDM1|p.L810V|1|0.13|ENSG00000057657|chr6:106107436-106107436|C/G|missense_variant	REV__PRDM1|p.L810V|1|0.13|ENSG00000057657|chr6:106107436-106107436|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.5760515198	1	850.576052	849.568775	1.9062	0.0016213	-3.9589	-0.0033673	-2.0527	-0.001746	850.5726076911922	57.165	0.12014	57.165	57.141	57.261	0	345	79	1.4143922	0.046377897	1.4143922	287.85693	0	9.438812						213	6	4	NaN	NaN	NaN	0.84651	1	5383	5383		1.6704	0	1	47468	+		28734	13297	16563	17026	22946	22946					0.13797341667554974
VKVPVVPL	8	Unmodified						0	0	0			REV__PRDM1|p.L810V|1|0.13|ENSG00000057657|chr6:106107436-106107436|C/G|missense_variant	REV__PRDM1|p.L810V|1|0.13|ENSG00000057657|chr6:106107436-106107436|C/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	850.576052	849.568775	1.9062	0.0016213	-3.9589	-0.0033673	-2.0527	-0.001746	850.5726076911922	57.165	0.12014	57.165	57.141	57.261	0	345	79	1.4143922	0.046377897	1.4143922	287.85693		9.438812	0.0012796	-0.00097386	-0.00013183	NaN	1.6704	213	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47468	+		28735	13297	16563	17026							0.13797341667554974
VKVVVPPL	8	Unmodified	_VKVVVPPL_					0	0	0		nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	850.5760515198	1	850.576052	849.568775	1.7946	0.0015264	-4.1823	-0.0035574	-2.3877	-0.002031	850.5726610617972	57.597	0.19188	57.597	57.501	57.693	0	348	46	1.412609	0.026749372	1.412609	287.49402	0	5.4440002						139	9	2	NaN	NaN	NaN	0.84876	1	5382	5382		0.39566	0	1	10256			28736	7926	16564	17027	22947	22947					0.13797341667554974
VKVVVPPL	8	Unmodified	_VKVVVPPL_					0	0	0		nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.5760515198	1	850.576052	849.568775	-0.6105	-0.00051928	-1.6077	-0.0013675	-2.2182	-0.0018868	850.5746487551035	57.163	0.12015	57.162	57.138	57.258	-0.00053787	342	67	1.4161754	0.039226055	1.4146559	288.21982	0	7.983307						218	6	4	NaN	NaN	NaN	0.84876	1	5251	5251		0.39566	0	1	50544			28737	7926	16564	17027	22948	22948					0.13797341667554974
VKVVVPPL	8	Unmodified	_VKVVVPPL_					0	0	0		nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	nc|ENSG00000112335|O60493-2|SNX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.5760515198	1	850.576052	849.568775	-0.075882	-6.4544E-05	-2.0405	-0.0017356	-2.1164	-0.0018002	850.5743942411788	57.666	0.071968	57.666	57.666	57.738	-0.00050735	345	37	1.4143922	0.02139604	1.4128729	287.85693	0	4.3545227						56	4	2	NaN	NaN	NaN	0.84876	1	5252	5252		0.39566	0	1	3883.8			28738	7926	16564	17027	22949	22949					0.13797341667554974
VLAACGHG	8	Unmodified	_VLAACGHG_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.18142343955003	2	364.181423	726.348294	1.6767	0.00061062	2.2098	0.00080477	3.8865	0.0014154	364.18273177715827	54.956	0.047932	54.956	54.932	54.98	0	1530	37	0.6949163	0.022326529	0.6949163	283.61417	0	9.112061						77	3	3	NaN	NaN	NaN	0.84876	1	3709	3709		0.39566	0	1	8076.8	+		28739	9675	16565	17028	22950	22950					-0.02582626931496179
VLAAGAGGA	9	Unmodified	_VLAAGAGGA_					0	0	0			REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.3831653715001	1	686.383165	685.375889	1.2789	0.00087783	3.7776	0.0025929	5.0565	0.0034707	686.3852110684385	33.334	0.048248	33.331	33.307	33.355	-0.0024757	645	76	1.2351195	0.045060277	1.2336	252.32814	0	9.205566						89	3	2	NaN	NaN	NaN	0.6762	1	2870	2870		1.2418	0	1	4866.3	+		28740	12684	16566	17029	22951	22951					0.020615996003812143
VLAAGAGGA	9	Unmodified						0	0	0			REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	686.383165	685.375889	1.3394	0.00091932	4.5008	0.0030893	5.8402	0.0040086	686.3853980860198	33.335	0.048271	33.335	33.335	33.383	0	651	67	1.2315145	0.039663672	1.2315145	251.59166		8.103073	0.0019035	0.00019897	-0.0010428	NaN	1.2418	73	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3579	+		28741	12684	16566	17029							0.020615996003812143
VLAAGAGGA	9	Unmodified						0	0	0			REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	REV__ENST00000538183.6_1_6:160114218-160114350:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	686.383165	685.375889	1.2789	0.00087783	3.7776	0.0025929	5.0565	0.0034707	686.3852110684385	33.334	0.048248	33.331	33.307	33.355	-0.0024757	645	76	1.2351195	0.045060277	1.2336	252.32814		9.205566	-0.0019035	-0.00029744	0.0010428	NaN	1.2418	89	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4866.3	+		28742	12684	16566	17029							0.020615996003812143
VLAARGAH	8	Unmodified	_VLAARGAH_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.7352117468	2	397.735212	793.455871	0.61809	0.00024584	1.255	0.00049916	1.8731	0.00074499	397.73604330903873	33.334	0.21716	33.331	33.307	33.524	-0.0024757	1458	40	0.7395112	0.024122834	0.73799175	301.34268	0	9.829773						185	10	4	NaN	NaN	NaN	0.84876	1	4580	4580		0.39566	0	1	25724			28743	4476	16567	17030	22952	22952					0.050880859942253664
VLAAWGAF	8	Unmodified	_VLAAWGAF_					0	0	0			REV__SLC35A4|p.S250A|1|0.09|ENSG00000176087|chr5:140567917-140567917|T/G|missense_variant	REV__SLC35A4|p.S250A|1|0.09|ENSG00000176087|chr5:140567917-140567917|T/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.7290637364	2	417.729064	833.443575	2.0773	0.00086775	7.4249	0.0031016	9.5022	0.0039694	417.7322440714806	13.925	0.095992	13.925	13.901	13.997	0	1566	49	0.6725752	0.029814005	0.6725752	273.84375	0	12.139008						52	5	2	NaN	NaN	NaN	0.81214	1	5178	5178		7.5902	3.1771	1	4481.3	+		28744	13319	16568	17031	22953	22953					0.02019049531179462
VLAAWGAF	8	Unmodified						0	0	0			REV__SLC35A4|p.S250A|1|0.09|ENSG00000176087|chr5:140567917-140567917|T/G|missense_variant	REV__SLC35A4|p.S250A|1|0.09|ENSG00000176087|chr5:140567917-140567917|T/G|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	417.729064	833.443575	2.0773	0.00086775	7.4249	0.0031016	9.5022	0.0039694	417.7322440714806	13.925	0.095992	13.925	13.901	13.997	0	1566	49	0.6725752	0.029814005	0.6725752	273.84375		12.139008	-0.054603	0.0012868	0.0016913	NaN	7.5902	52	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4481.3	+		28745	13319	16568	17031							0.02019049531179462
VLAELPLV	8	Unmodified	_VLAELPLV_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.5393316625002	1	853.539332	852.532055	1.5712	0.0013411	0.31692	0.0002705	1.8881	0.0016116	853.5400381978606	32.635	0.048302	32.635	32.611	32.659	0	384	55	1.3911947	0.03213501	1.3911947	283.1201	0	6.5397644						61	3	2	NaN	NaN	NaN	0.84887	1	5424	5424		0.32989	0	1	4498.3	+		28746	8712	16569	17032	22954	22954					0.09989045051008816
VLAESEMAT	9	Unmodified	_VLAESEMAT_					0	0	0			REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	475.72860038715004	2	475.7286	949.442648	1.317	0.00062654	1.3678	0.00065068	2.6848	0.0012772	475.72914488841917	27.471	0.072422	27.471	27.446	27.519	0	1380	40	0.7876915	0.024052322	0.7876915	320.0793	0	9.773682						59	4	2	NaN	NaN	NaN	0.47587	1	7063	7063		10.605	0	1	4437.8	+		28747	8422	16570	17033	22955	22955					-0.03409577690683818
VLAGFGGV	8	Unmodified	_VLAGFGGV_					0	0	0			REV__nc|ENSG00000134873|P78369-3|CLDN10	REV__nc|ENSG00000134873|P78369-3|CLDN10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.4086518405002	1	719.408652	718.401375	1.7804	0.0012808	-0.20712	-0.000149	1.5733	0.0011318	719.4082821618892	26.143	0.16891	26.131	26.083	26.252	-0.011137	510	91	1.316029	0.05383897	1.3145095	268.61542	0	10.989075						216	8	3	NaN	NaN	NaN	0.81214	1	3504	3504		7.5902	0	1	33163	+		28748	13120	16571	17034	22956	22956					0.030910741228126426
VLAKLIVT	8	Unmodified	_VLAKLIVT_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.5866162061003	1	856.586616	855.57934	0.05875	5.0324E-05	6.0202	0.0051568	6.079	0.0052072	856.5917518822449	57.979	0.048161	57.978	57.93	57.978	-0.00051117	354	49	1.4090419	0.028540134	1.4075224	286.7359	0	5.8078613						48	3	2	NaN	NaN	NaN	0.84945	1	5341	5341		0	0	1	3676.4	+		28749	8575	16572	17035	22957	22957					0.14577324322010554
VLALERNED	9	Unmodified	_VLALERNED_					0	0	0			REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	353.52073915020003	3	353.520739	1057.54039	1.5631	0.0005526	4.9271	0.0017418	6.4902	0.0022944	353.52234108123173	24.743	0.096537	24.743	24.743	24.84	0	1557	34	0.67816323	0.02048713	0.67816323	412.74997	0	12.469086						81	5	3	NaN	NaN	NaN	0.49672	1	10995	10995		8.9191	4.3016	1	5307.5	+		28750	8491	16573	17036	22958	22958					0.013919472296720414
VLALERNED	9	Unmodified						0	0	0			REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	353.520739	1057.54039	1.5631	0.0005526	4.9271	0.0017418	6.4902	0.0022944	353.52234108123173	24.743	0.096537	24.743	24.743	24.84	0	1557	34	0.67816323	0.02048713	0.67816323	412.74997		12.469086	0	0	0	NaN	8.9191	81	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5307.5	+		28751	8491	16573	17036							0.013919472296720414
VLAPVGPG	8	Unmodified	_VLAPVGPG_					0	0	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.4243019047002	1	709.424302	708.417025	1.1907	0.00084472	5.7485	0.0040781	6.9392	0.0049229	709.4279740538155	35.938	0.28922	35.94	35.891	36.181	0.0011024	591	127	1.26753	0.075624466	1.2660105	258.78445	0	15.439835						606	13	4	NaN	NaN	NaN	0.77734	1	3337	3337		12.26	0	1	188660	+		28752	9224	16574	17037	22959	22959					0.05115360639865685
VLARAGLG	8	Unmodified	_VLARAGLG_					0	0	0		ENST00000355857.7_1_2:120124497-120125765:+|nuORF	ENST00000355857.7_1_2:120124497-120125765:+|nuORF	ENST00000355857.7_1_2:120124497-120125765:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.4726490808002	1	756.472649	755.465373	-0.16432	-0.0001243	2.0201	0.0015282	1.8558	0.0014039	756.4735489636043	55.074	0.16803	55.073	55.001	55.169	-0.00061798	534	58	1.3016734	0.034099817	1.300154	265.44125	0	6.9537354						128	8	3	NaN	NaN	NaN	0.84876	1	4089	4089		0.39566	0	1	12000			28753	6568	16575	17038	22960	22960					0.077858542797685
VLARGVGG	8	Unmodified	_VLARGVGG_					0	0	0			REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.4413489524003	1	728.441349	727.434072	-0.43305	-0.00031545	1.1282	0.0008218	0.6951	0.00050634	728.4421473219907	56.035	0.072025	56.034	56.034	56.106	-0.00059128	621	61	1.2495319	0.036011577	1.2480124	254.98338	0	7.348648						100	4	2	NaN	NaN	NaN	0.84945	1	3644	3644		0	0	1	23751	+		28754	10906	16576	17039	22961	22961					0.059452812456811444
VLATAGPP	8	Unmodified	_VLATAGPP_					0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.4192165268001	1	725.419217	724.41194	1.1616	0.00084262	5.3574	0.0038863	6.5189	0.0047289	725.4232678373409	32.539	0.19305	32.539	32.49	32.683	0	567	64	1.2819146	0.037745595	1.2819146	261.61166	0	7.7030945						274	9	3	NaN	NaN	NaN	0.84651	1	3679	3679		1.6704	0	1	39818	+		28755	11784	16577	17040	22962	22962					0.03871056777245485
VLATAGPP	8	Unmodified	_VLATAGPP_					0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	725.4192165268001	1	725.419217	724.41194	0.9135	0.00066267	5.6897	0.0041274	6.6032	0.0047901	725.4231691788581	31.477	0.07238	31.477	31.452	31.525	0	561	31	1.2855089	0.017967343	1.2855089	262.34518	0	3.6667786						40	4	2	NaN	NaN	NaN	0.84876	1	3680	3680		0.39566	0	1	2186.3	+		28756	11784	16577	17040	22963	22963					0.03871056777245485
VLATAGPP	8	Unmodified	_VLATAGPP_					0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.4192165268001	1	725.419217	724.41194	0.91683	0.00066509	5.7361	0.004161	6.6529	0.0048261	725.4231875305985	32.537	0.19308	32.534	32.51	32.703	-0.0031052	564	76	1.2837118	0.044939995	1.2821923	261.97842	0	9.171295						277	9	3	NaN	NaN	NaN	0.84651	1	3595	3595		1.6704	0	1	43986	+		28757	11784	16577	17040	22964	22964					0.03871056777245485
VLATAGPP	8	Unmodified						0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	725.419217	724.41194	1.1616	0.00084262	5.3574	0.0038863	6.5189	0.0047289	725.4232678373409	32.539	0.19305	32.539	32.49	32.683	0	567	64	1.2819146	0.037745595	1.2819146	261.61166		7.7030945	0.0020672	-9.8875E-05	-0.00013889	NaN	1.6704	274	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39818	+		28758	11784	16577	17040							0.03871056777245485
VLATAGPP	8	Unmodified						0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	725.419217	724.41194	0.9135	0.00066267	5.6897	0.0041274	6.6032	0.0047901	725.4231691788581	31.477	0.07238	31.477	31.452	31.525	0	561	31	1.2855089	0.017967343	1.2855089	262.34518		3.6667786	0	0	0	NaN	0.39566	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2186.3	+		28759	11784	16577	17040							0.03871056777245485
VLATAGPP	8	Unmodified						0	0	0			REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	REV__ENST00000340738.9_2_14:73711373-73716709:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	725.419217	724.41194	0.91683	0.00066509	5.7361	0.004161	6.6529	0.0048261	725.4231875305985	32.537	0.19308	32.534	32.51	32.703	-0.0031052	564	76	1.2837118	0.044939995	1.2821923	261.97842		9.171295	-0.0020672	0.00017584	0.00013889	NaN	1.6704	277	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43986	+		28760	11784	16577	17040							0.03871056777245485
VLATIVRG	8	Unmodified	_VLATIVRG_					0	0	0			REV__chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	REV__chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.5301639597002	1	828.530164	827.522887	1.9566	0.0016211	0.75277	0.00062369	2.7093	0.0022448	828.5308239657974	56.157	0.2399	56.157	56.061	56.301	0	393	52	1.3858368	0.030364394	1.3858368	282.16495	0	6.1823425						245	11	2	NaN	NaN	NaN	0.84887	1	5119	5119		0.32989	0	1	27202	+		28761	8208	16578	17041	22965	22965					0.10222696485334382
VLDAEDSDKW	10	Unmodified	_VLDAEDSDKW_					0	0	0			REV__ENST00000402326.1_1_6:116774179-116774323:-|nuORF	REV__ENST00000402326.1_1_6:116774179-116774323:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.18390411459995	3	393.183904	1176.52988	1.4508	0.00057044	2.3197	0.00091205	3.7705	0.0014825	393.18483205493806	21.802	0.14453	21.802	21.778	21.922	0	1449	43	0.74507743	0.025971413	0.74507743	452.88693	0	15.786407						100	7	2	NaN	NaN	NaN	0.77421	1	15689	15689		0.71611	0	1	12686	+		28762	9346	16579	17042	22966	22966					-0.05132080215435053
VLDAEVLL	8	Unmodified	_VLDAEVLL_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.5135108425001	1	871.513511	870.506234	1.8968	0.0016531	0.20266	0.00017662	2.0995	0.0018297	871.5123295718356	30.077	0.072449	30.077	30.053	30.125	0	330	43	1.4233059	0.02495408	1.4233059	289.56006	0	5.076721						73	4	2	NaN	NaN	NaN	0.54545	1	5669	5669		28.667	0	1	6269.2			28763	3008	16580	17043	22967	22967					0.0658015080871337
VLDAEVLL	8	Unmodified	_VLDAEVLL_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.5135108425001	1	871.513511	870.506234	1.0052	0.00087607	-1.3598	-0.0011851	-0.35458	-0.00030902	871.5128345030843	30.076	0.072403	30.07	30.045	30.118	-0.0064087	333	46	1.4215236	0.026737928	1.4200041	289.19745	0	5.4396057						76	4	2	NaN	NaN	NaN	0.65075	1	5532	5532		22.126	1.5709	1	7198.5			28764	3008	16580	17043	22968	22968					0.0658015080871337
VLDELVRP	8	Unmodified	_VLDELVRP_					0	0	0		nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	nc|ENSG00000164749|Q14541|HNF4G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.7767422105	2	470.776742	939.538931	0.99807	0.00046987	-1.0326	-0.0004861	-0.034488	-1.6236E-05	470.7758098486743	20.911	0.12029	20.911	20.887	21.007	0	1350	52	0.80618626	0.03141558	0.80618626	327.64395	0	12.76767						118	6	3	NaN	NaN	NaN	0.43738	1	6821	6821		34.439	4.8405	1	17504			28765	4343	16581	17044	22969	22969					0.0667435793156983
VLDPEEDLLC	10	Unmodified	_VLDPEEDLLC_					0	0	0		ENSG00000114737|ENST00000348721|CISH;nc|ENSG00000114737|Q9NSE2-2|CISH;nc|ENSG00000114737|Q9NSE2-3|CISH;ENST00000491847.1_1_3:50645040-50646098:-|nuORF	ENSG00000114737|ENST00000348721|CISH	ENSG00000114737|ENST00000348721|CISH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2733720315501	2	573.273372	1144.53219	1.4174	0.00081255	1.8474	0.0010591	3.2648	0.0018716	573.2746035722167	23.706	0.31339	23.693	23.693	24.006	-0.013048	1230	127	0.8799654	0.07729244	0.878446	356.7038	0	31.33136						336	14	2	NaN	NaN	NaN	0.62764	1	14125	14125		13.003	3.2568	1	50826			28766	1971	16582	17045	22970	22970					-0.034293678019594154
VLEEYSRN	8	Unmodified	_VLEEYSRN_					0	0	0			REV__ENST00000342449.7_2_21:40670494-40684812:-|nuORF	REV__ENST00000342449.7_2_21:40670494-40684812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.251088566	2	505.251089	1008.48762	1.5179	0.00076691	-10.91	-0.0055122	-9.392	-0.0047453	505.24540699688066	28.846	0.096537	28.846	28.822	28.918	0	1323	34	0.8228144	0.02031231	0.8228144	334.0721	0	8.24704						78	5	3	NaN	NaN	NaN	0.76406	1	8917	8917		14.042	0.30454	1	8292.1	+		28767	8168	16583	17046	22971	22971					-0.016280108331329757
VLEGDSSEDR	10	Unmodified	_VLEGDSSEDR_					0	0	0		nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	369.50352527019993	3	369.503525	1105.48875	1.6605	0.00061357	1.3235	0.00048904	2.984	0.0011026	369.8386319004215	30.341	0.07238	30.335	30.311	30.383	-0.0064106	1524	31	0.698637	0.018599331	0.69711757	424.9742	0	11.313812						61	4	2	NaN	NaN	NaN	0.69717	1	12719	12719		4.2489	1.5447	1	4541			28768	2787	16584	17047	22972	22972					-0.05977841254912164
VLEGHPPD	8	Unmodified	_VLEGHPPD_					0	0	0		ENST00000550355.1_1_14:32030735-32137181:+|nuORF	ENST00000550355.1_1_14:32030735-32137181:+|nuORF	ENST00000550355.1_1_14:32030735-32137181:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.4257584677	1	863.425758	862.418482	2.1118	0.0018233	-3.0497	-0.0026332	-0.93794	-0.00080984	863.4264822670278	22.597	0.048273	22.597	22.573	22.621	0	453	49	1.3500742	0.028643727	1.3500742	274.70172	0	5.828186						49	3	2	NaN	NaN	NaN	0.77489	1	5558	5558		12.588	0	1	3333.6			28769	7540	16585	17048	22973	22973					-0.018230500620575185
VLEPVPLP	8	Unmodified	_VLEPVPLP_					0	0	0		ENST00000473405.1_1_11:64120912-64122720:+|nuORF;ENST00000479965.5_1_11:64120415-64123189:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B	ENST00000473405.1_1_11:64120912-64122720:+|nuORF	ENST00000473405.1_1_11:64120912-64122720:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.5236815983	1	863.523682	862.516405	1.5371	0.0013273	-1.5861	-0.0013697	-0.049055	-4.236E-05	863.522816635538	32.177	0.072403	32.177	32.152	32.225	0	339	34	1.4179583	0.019611955	1.4179583	288.5137	0	3.9904785						59	4	2	NaN	NaN	NaN	0.84887	1	5567	5567		0.32989	0	1	3947.8			28770	4593	16586	17049	22974	22974					0.07964758533933036
VLFYTACLDP	10	Unmodified	_VLFYTACLDP_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.19145401376664	3	381.191454	1140.55253	1.8007	0.0006864	1.7641	0.00067245	3.5648	0.0013589	381.1925478552255	19.587	0.096289	19.573	19.524	19.621	-0.014141	1524	37	0.698637	0.022319257	0.69711757	424.8136	0	13.571442						67	5	2	NaN	NaN	NaN	0.69717	1	13999	13999		4.2489	0.32079	1	6647.9			28771	4668	16587	17050	22975	22975					-0.012121523515133958
VLGALETI	8	Unmodified	_VLGALETI_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4872960920001	1	815.487296	814.48002	-0.14219	-0.00011595	-9.3718	-0.0076426	-9.514	-0.0077585	815.4783506980526	56.035	0.096031	56.034	56.01	56.106	-0.00059128	474	67	1.3375392	0.039410353	1.3360198	272.4025	0	8.026306						182	5	3	NaN	NaN	NaN	0.84692	1	4843	4843		1.4396	0	1	57431			28772	4137	16588	17051	22976	22976					0.06535881637239527
VLGALETI	8	Unmodified						0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.487296	814.48002	2.202	0.0017957	-10.466	-0.0085346	-8.2637	-0.006739	815.4779890717275	56.037	0.144	56.037	56.013	56.157	0	477	88	1.3357477	0.051980495	1.3357477	272.03766		10.586304	0.0013334	-0.00032001	-0.00013602	NaN	1.4396	240	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56971			28773	4137	16588	17051							0.06535881637239527
VLGAVIGT	8	Unmodified	_VLGAVIGT_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.4505166552002	1	729.450517	728.44324	-0.39448	-0.00028775	6.6949	0.0048836	6.3004	0.0045958	729.4549212813454	54.57	0.12054	54.569	54.497	54.617	-0.00061798	549	61	1.292695	0.035919428	1.2911756	263.7846	0	7.3296204						122	6	2	NaN	NaN	NaN	0.84876	1	3668	3668		0.39566	0	1	15719			28774	5579	16589	17052	22977	22977					0.06815629811342205
VLGDCGPL	8	Unmodified	_VLGDCGPL_					0	0	0			REV__ENSG00000241186|ENST00000296145|TDGF1	REV__ENSG00000241186|ENST00000296145|TDGF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.3862018389001	1	773.386202	772.378925	-0.15634	-0.00012091	-8.6025	-0.0066531	-8.7588	-0.006774	773.3794548356913	55.026	0.096012	55.025	55.025	55.121	-0.0006218	396	148	1.3840506	0.087586045	1.3825312	282.12967	0	17.853851						267	5	3	NaN	NaN	NaN	0.84692	1	4311	4311		1.4396	0	1	56585	+		28775	11341	16590	17053	22978	22978					-0.016368933371154526
VLGDLDLR	8	Unmodified	_VLGDLDLR_					0	0	0		ENST00000506254.5_1_3:139396624-139396765:-|nuORF	ENST00000506254.5_1_3:139396624-139396765:-|nuORF	ENST00000506254.5_1_3:139396624-139396765:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.76109214630003	2	450.761092	899.507631	1.1416	0.00051458	3.405	0.0015349	4.5466	0.0020494	450.76226741394464	56.565	0.14371	56.565	56.541	56.684	0	1317	37	0.8265074	0.022155285	0.8265074	336.11807	0	9.009979						132	7	3	NaN	NaN	NaN	0.84207	1	6062	6062		3.5732	0	1	16152			28776	7333	16591	17054	22979	22979					0.05385784897475787
VLGDLDLR	8	Unmodified						0	0	0		ENST00000506254.5_1_3:139396624-139396765:-|nuORF	ENST00000506254.5_1_3:139396624-139396765:-|nuORF	ENST00000506254.5_1_3:139396624-139396765:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	450.761092	899.507631	-0.58783	-0.00026497	7.0189	0.0031639	6.4311	0.0028989	450.7649289187042	56.587	0.11979	56.586	56.538	56.658	-0.00056458	1314	34	0.8283535	0.020305753	0.8268341	336.86887		8.257782	0.010747	0.0019981	0.00016337	NaN	3.5732	98	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10441			28777	7333	16591	17054							0.05385784897475787
VLGFGPTY	8	Unmodified	_VLGFGPTY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.22635387195	2	427.226354	852.438155	0.32119	0.00013722	-6.5304	-0.00279	-6.2093	-0.0026528	427.2238191986856	35.529	0.14475	35.529	35.481	35.626	0.00053024	1386	100	0.78399014	0.061062455	0.7824707	319.09207	0	24.853058						337	7	4	NaN	NaN	NaN	0.84692	1	5283	5283		1.4396	0.19772	1	41332			28778	613	16592	17055	22980	22980					0.0060332594871397305
VLGGAIVG	8	Unmodified	_VLGGAIVG_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.4243019047002	1	685.424302	684.417025	2.0898	0.0014324	6.3382	0.0043443	8.428	0.0057767	685.4285772572574	55.58	0.12013	55.58	55.508	55.629	0	510	130	1.316029	0.077222705	1.316029	268.86487	0	15.776611						307	6	2	NaN	NaN	NaN	0.84876	1	2936	2936		0.39566	0	1	64551	+		28779	9204	16593	17056	22981	22981					0.0621936063986368
VLGGAIVG	8	Unmodified	_VLGGAIVG_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.4243019047002	1	685.424302	684.417025	-0.27293	-0.00018708	7.1302	0.0048872	6.8572	0.0047001	685.4285452372025	55.891	0.14409	55.89	55.866	56.01	-0.00059128	528	94	1.3052634	0.055654287	1.303744	266.66547	0	11.370178						178	7	2	NaN	NaN	NaN	0.84651	1	2858	2858		1.6704	0	1	27718	+		28780	9204	16593	17056	22982	22982					0.0621936063986368
VLGGAIVG	8	Unmodified	_VLGGAIVG_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.4243019047002	1	685.424302	684.417025	-0.17297	-0.00011856	9.3706	0.0064228	9.1976	0.0063043	685.4315630870915	53.97	0.16797	53.969	53.921	54.089	-0.00059128	552	46	1.2908988	0.026946783	1.2893794	263.73074	0	5.5052185						129	8	2	NaN	NaN	NaN	0.84876	1	2859	2859		0.39566	0	1	10680	+		28781	9204	16593	17056	22983	22983					0.0621936063986368
VLGGAIVG	8	Unmodified	_VLGGAIVG_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.4243019047002	1	685.424302	684.417025	-0.20085	-0.00013767	9.488	0.0065033	9.2872	0.0063657	685.430673507886	55.578	0.24044	55.578	55.506	55.746	-0.00059128	507	103	1.3178225	0.06102395	1.316303	269.23126	0	12.467194						397	11	3	NaN	NaN	NaN	0.84876	1	2860	2860		0.39566	0	1	59403	+		28782	9204	16593	17056	22984	22984					0.0621936063986368
VLGGAIVG	8	Unmodified						0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	685.424302	684.417025	2.0898	0.0014324	6.3382	0.0043443	8.428	0.0057767	685.4285772572574	55.58	0.12013	55.58	55.508	55.629	0	510	130	1.316029	0.077222705	1.316029	268.86487		15.776611	-0.15487	-7.3973E-05	0.0061425	NaN	1.6704	307	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64551	+		28783	9204	16593	17056							0.0621936063986368
VLGGAIVG	8	Unmodified						0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	685.424302	684.417025	1.9473	0.0013347	8.2572	0.0056597	10.204	0.0069944	685.4302126421906	53.948	0.19213	53.948	53.9	54.092	0	555	55	1.2891023	0.03234136	1.2891023	263.36374		6.6073303	-0.010725	-0.00031395	-0.00013851	NaN	0.39566	166	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17290	+		28784	9204	16593	17056							0.0621936063986368
VLGGAIVG	8	Unmodified						0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	685.424302	684.417025	-0.27293	-0.00018708	7.1302	0.0048872	6.8572	0.0047001	685.4285452372025	55.891	0.14409	55.89	55.866	56.01	-0.00059128	528	94	1.3052634	0.055654287	1.303744	266.66547		11.370178	0.15487	0.00046888	-0.0061425	NaN	1.6704	178	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27718	+		28785	9204	16593	17056							0.0621936063986368
VLGGAIVG	8	Unmodified						0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	685.424302	684.417025	-0.17297	-0.00011856	9.3706	0.0064228	9.1976	0.0063043	685.4315630870915	53.97	0.16797	53.969	53.921	54.089	-0.00059128	552	46	1.2908988	0.026946783	1.2893794	263.73074		5.5052185	0.010725	0.00044921	0.00013851	NaN	0.39566	129	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10680	+		28786	9204	16593	17056							0.0621936063986368
VLGGGGGR	8	Unmodified	_VLGGGGGR_					0	0	0			REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3787486956	1	672.378749	671.371472	1.8693	0.0012569	-2.3787	-0.0015994	-0.50944	-0.00034254	672.3796267962169	40.655	0.072033	40.661	40.637	40.709	0.0067558	1182	28	0.9093879	0.016536713	0.90786844	185.85883	0	3.3797455						39	4	2	NaN	NaN	NaN	0.84887	1	2554	2554		0.32989	0	1	2297.8	+		28787	11533	16594	17057	22985	22985					0.022641351774723262
VLGGGGGR	8	Unmodified						0	0	0			REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	672.378749	671.371472	0.66909	0.00044988	-3.1334	-0.0021068	-2.4643	-0.001657	672.3772491627329	40.32	0.096134	40.32	40.296	40.392	0	1185	52	0.90755045	0.031242788	0.90755045	185.4833		6.3853455	-0.17061	-0.00027138	-0.00015899	NaN	0.32989	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7417.3	+		28788	11533	16594	17057							0.022641351774723262
VLGGGGGR	8	Unmodified						0	0	0			REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	REV__ENST00000257860.8_1_12:49688178-49688403:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	672.378749	671.371472	1.8693	0.0012569	-2.3787	-0.0015994	-0.50944	-0.00034254	672.3796267962169	40.655	0.072033	40.661	40.637	40.709	0.0067558	1182	28	0.9093879	0.016536713	0.90786844	185.85883		3.3797455	0.17061	0.00023605	0.00015899	NaN	0.32989	39	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2297.8	+		28789	11533	16594	17057							0.022641351774723262
VLGGGGKS	8	Unmodified	_VLGGGGKS_					0	0	0		ENST00000430423.5_1_3:48960216-48965004:+|nuORF;ENST00000452882.5_1_3:48956379-48965004:+|nuORF	ENST00000430423.5_1_3:48960216-48965004:+|nuORF	ENST00000430423.5_1_3:48960216-48965004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3831653715	1	674.383165	673.375889	1.4033	0.00094634	-2.961	-0.0019968	-1.5577	-0.0010505	674.3810277189878	55.124	0.07238	55.124	55.1	55.172	0	579	88	1.2747238	0.05216384	1.2747238	260.50995	0	10.660507						116	4	2	NaN	NaN	NaN	0.8439	1	2688	2688		3.1533	0	1	16712			28790	6966	16595	17058	22986	22986					0.026135996003745277
VLGGGGKS	8	Unmodified	_VLGGGGKS_					0	0	0		ENST00000430423.5_1_3:48960216-48965004:+|nuORF;ENST00000452882.5_1_3:48956379-48965004:+|nuORF	ENST00000430423.5_1_3:48960216-48965004:+|nuORF	ENST00000430423.5_1_3:48960216-48965004:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.3831653715	1	674.383165	673.375889	1.5061	0.0010157	-2.0052	-0.0013523	-0.49909	-0.00033658	674.381590300877	55.076	0.024063	55.076	55.052	55.076	0	579	274	1.2747238	0.16372252	1.2747238	260.50995	0	33.45929						224	2	2	NaN	NaN	NaN	0.8439	1	2689	2689		3.1533	0	1	48270			28791	6966	16595	17058	22987	22987					0.026135996003745277
VLGGILVI	8	Unmodified	_VLGGILVI_					0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.5338523541001	1	783.533852	782.526576	1.0231	0.00080163	1.2257	0.00096038	2.2488	0.001762	783.5345673154952	33.528	0.096397	33.528	33.504	33.6	0	480	61	1.3339561	0.03583145	1.3339561	271.85663	0	7.3023376						144	5	3	NaN	NaN	NaN	0.60626	1	4539	4539		24.901	0	1	18218	+		28792	11020	16596	17059	22988	22988					0.12661366259180795
VLGGILVI	8	Unmodified						0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	783.533852	782.526576	1.0231	0.00080163	1.2257	0.00096038	2.2488	0.001762	783.5345673154952	33.528	0.096397	33.528	33.504	33.6	0	480	61	1.3339561	0.03583145	1.3339561	271.85663		7.3023376	0.0016087	0.00066493	-0.0010318	NaN	24.901	144	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18218	+		28793	11020	16596	17059							0.12661366259180795
VLGGKATV	8	Unmodified	_VLGGKATV_					0	0	0			REV__ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant	REV__ARID3C|p.P319Qfs*7|1|0.37|ENSG00000205143|chr9:34622439-34622439|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	744.4614156924999	1	744.461416	743.454139	0.25328	0.00018856	-9.2336	-0.0068741	-8.9803	-0.0066855	744.4549413390395	55.987	0.21613	55.986	55.938	56.154	-0.00059128	579	310	1.2747238	0.18596768	1.2732043	260.0205	0	37.93402						610	10	5	NaN	NaN	NaN	0.84876	1	3885	3885		0.39566	0	1	327510	+		28794	8143	16597	17060	22989	22989					0.07215032185604286
VLGGTSNG	8	Unmodified	_VLGGTSNG_					0	0	0			REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.3573445515001	1	704.357345	703.350068	1.4766	0.00104	3.3658	0.0023707	4.8424	0.0034108	704.3597359485228	26.36	0.12068	26.36	26.336	26.456	0	627	64	1.24593	0.037842512	1.24593	254.40927	0	7.7271576						105	6	2	NaN	NaN	NaN	0.8439	1	3269	3269		3.1533	0	1	7937.5	+		28795	8295	16598	17061	22990	22990					-0.01347294641902863
VLGGTSNG	8	Unmodified						0	0	0			REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	704.357345	703.350068	1.4766	0.00104	3.3658	0.0023707	4.8424	0.0034108	704.3597359485228	26.36	0.12068	26.36	26.336	26.456	0	627	64	1.24593	0.037842512	1.24593	254.40927		7.7271576	0.0057116	-0.0018317	-0.00014081	NaN	3.1533	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7937.5	+		28796	8295	16598	17061							-0.01347294641902863
VLGGTSNG	8	Unmodified						0	0	0			REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	REV__CREBRF|p.P625S|1|0.17|ENSG00000164463|chr5:173133698-173133698|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	704.357345	703.350068	1.4739	0.0010382	8.0796	0.0056909	9.5535	0.0067291	704.3623665519507	26.36	0.096529	26.349	26.324	26.421	-0.011135	624	40	1.247731	0.023413777	1.2462115	254.77701		4.7809143	-0.0057116	0.0014885	0.00014081	NaN	3.1533	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6230.3	+		28797	8295	16598	17061							-0.01347294641902863
VLGLARLL	8	Unmodified	_VLGLARLL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.5821995302002	1	854.5822	853.574923	2.0087	0.0017166	0.86723	0.00074112	2.876	0.0024577	854.5830801541015	57.981	0.21619	57.981	57.861	58.077	0	357	82	1.407258	0.04816413	1.407258	286.38354	0	9.801605						356	10	3	NaN	NaN	NaN	0.84876	1	5445	5445		0.39566	0	1	61925			28798	2963	16599	17062	22991	22991					0.14227859899096984
VLGLLPPP	8	Unmodified	_VLGLLPPP_					0	0	0		ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.5182022899	1	805.518202	804.510926	2.2352	0.0018005	-4.6413	-0.0037387	-2.4062	-0.0019382	805.5140869646768	55.148	0.14452	55.148	55.124	55.268	0	438	145	1.359022	0.085995436	1.359022	276.83453	0	17.517365						308	7	3	NaN	NaN	NaN	0.84876	1	4806	4806		0.39566	0	1	106190			28799	6609	16600	17063	22992	22992					0.1008507974213444
VLGMVIIA	8	Unmodified	_VLGMVIIA_					0	0	0			REV__ENST00000563080.1_1_16:68321292-68325468:+|nuORF	REV__ENST00000563080.1_1_16:68321292-68325468:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.5059230441002	1	815.505923	814.498647	2.0651	0.0016841	7.0906	0.0057824	9.1557	0.0074666	815.5113272123581	59.109	0.14404	59.109	59.037	59.181	0	420	52	1.3697531	0.0303967	1.3697531	278.96298	0	6.1905518						117	7	2	NaN	NaN	NaN	0.84876	1	4950	4950		0.39566	0	1	12436	+		28800	8904	16601	17064	22993	22993					0.08397720007451426
VLGMVIIA	8	Unmodified						0	0	0			REV__ENST00000563080.1_1_16:68321292-68325468:+|nuORF	REV__ENST00000563080.1_1_16:68321292-68325468:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	815.505923	814.498647	2.0651	0.0016841	7.0906	0.0057824	9.1557	0.0074666	815.5113272123581	59.109	0.14404	59.109	59.037	59.181	0	420	52	1.3697531	0.0303967	1.3697531	278.96298		6.1905518	0.0013689	-0.0010343	-0.00013421	NaN	0.39566	117	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12436	+		28801	8904	16601	17064							0.08397720007451426
VLGPCALLP	9	Unmodified	_VLGPCALLP_					0	0	0		nc|ENSG00000178057|Q9BU61-2|NDUFAF3;ENST00000480392.1_1_3:49059577-49060305:+|nuORF;ENSG00000178057|ENST00000326925|NDUFAF3	nc|ENSG00000178057|Q9BU61-2|NDUFAF3	nc|ENSG00000178057|Q9BU61-2|NDUFAF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.75950658505	2	441.759507	881.50446	-0.57599	-0.00025445	-1.3386	-0.00059136	-1.9146	-0.00084581	441.758453839355	56.587	0.071884	56.586	56.562	56.634	-0.00056458	1317	31	0.8265074	0.018462718	0.82498795	336.22128	0	7.51062						85	4	3	NaN	NaN	NaN	0.65388	1	5704	5704		3.1533	0	1	9013.2			28802	5100	16602	17065	22994	22994					0.05896818519113367
VLGQMQGG	8	Unmodified	_VLGQMQGG_					0	0	0			REV__ENST00000548184.1_1_12:57644959-57689258:-|nuORF	REV__ENST00000548184.1_1_12:57644959-57689258:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.3923498493002	1	789.39235	788.385073	2.0685	0.0016328	-0.50217	-0.00039641	1.5663	0.0012364	789.3923922582906	30.342	0.04826	30.342	30.318	30.366	0	522	34	1.3088527	0.01973772	1.3088527	266.70645	0	4.0219727						47	3	2	NaN	NaN	NaN	0.82797	1	4606	4606		5.4659	0	1	2389.5	+		28803	10814	16603	17066	22995	22995					-0.017583751055894936
VLGRVLGS	8	Unmodified	_VLGRVLGS_					0	0	0		ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;ENSG00000134853|ENST00000257290|PDGFRA	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	ENST00000509092.5_1_4:55124935-55146696:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	800.4988638313002	1	800.498864	799.491587	1.9789	0.0015841	-0.40765	-0.00032632	1.5713	0.0012578	800.4980825683717	55.124	0.16843	55.124	55.028	55.196	0	462	49	1.3447032	0.028646827	1.3447032	273.9466	0	5.8359985						94	8	2	NaN	NaN	NaN	0.84876	1	4744	4744		0.39566	0	1	7749.7			28804	2902	16604	17067	22996	22996					0.08382123451247026
VLGSGSSR	8	Unmodified	_VLGSGSSR_					0	0	0		ENST00000476276.5_1_16:2892353-2892452:-|nuORF	ENST00000476276.5_1_16:2892353-2892452:-|nuORF	ENST00000476276.5_1_16:2892353-2892452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.70885961055	2	381.70886	761.403166	2.2245	0.00084912	-6.7404	-0.0025729	-4.5158	-0.0017237	381.7067637696391	55.1	0.02412	55.1	55.1	55.124	0	1494	25	0.7172283	0.014864981	0.7172283	292.4713	0	6.061615						25	2	2	NaN	NaN	NaN	0.84876	1	4229	4229		0.39566	0	1	1263.6			28805	7179	16605	17068	22997	22997					0.012920831407654987
VLGSLLLL	8	Unmodified	_VLGSLLLL_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.5600671046001	1	827.560067	826.552791	0.97795	0.00080931	-0.199	-0.00016468	0.77895	0.00064463	827.5596665321569	32.055	0.1689	32.051	32.003	32.172	-0.0037613	405	139	1.3786905	0.08228946	1.377171	280.71527	0	16.754944						469	8	4	NaN	NaN	NaN	0.13697	1	4987	4987		56.971	0	1	154130			28806	354	16606	17069	22998	22998					0.1325763543065932
VLGSSKVL	8	Unmodified	_VLGSSKVL_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.5032805072002	1	802.503281	801.496004	2.0517	0.0016465	-1.5607	-0.0012525	0.49095	0.00039399	802.5053835251156	55.701	0.096371	55.701	55.653	55.749	0	387	97	1.389409	0.057110906	1.389409	283.04224	0	11.634277						281	5	4	NaN	NaN	NaN	0.84876	1	4767	4767		0.39566	0	1	34985			28807	4052	16607	17070	22999	22999					0.08731587874149227
VLGSTGMG	8	Unmodified	_VLGSTGMG_					0	0	0			REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	REV__tr|U7SND7|U7SND7_FUSNUPhosphotransferasesystemEIICdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01901PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	721.3549017105001	1	721.354902	720.347625	1.5718	0.0011338	4.0008	0.002886	5.5725	0.0040198	721.3588756648892	28.146	0.24134	28.146	28.074	28.315	0	633	103	1.2423272	0.061291814	1.2423272	253.55928	0	12.509689						347	11	2	NaN	NaN	NaN	0.76633	1	3591	3591		13.737	4.6139	1	35224	+		28808	13442	16608	17071	23000	23000					-0.023734663712048132
VLGVVVVV	8	Unmodified	_VLGVVVVV_					0	0	0			REV__ENSG00000119973|ENST00000239032|PRLHR	REV__ENSG00000119973|ENST00000239032|PRLHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.5338523541002	1	783.533852	782.526576	1.3741	0.0010766	0.40531	0.00031757	1.7794	0.0013942	783.5343979896222	29.038	0.12065	29.031	29.007	29.127	-0.0077229	495	58	1.3249949	0.034067154	1.3234755	270.03036	0	6.9427795						117	6	3	NaN	NaN	NaN	0.46677	1	4451	4451		32.869	0	1	13301	+		28809	9304	16609	17072	23001	23001					0.12661366259192164
VLGVVVVV	8	Unmodified						0	0	0			REV__ENSG00000119973|ENST00000239032|PRLHR	REV__ENSG00000119973|ENST00000239032|PRLHR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.533852	782.526576	1.3741	0.0010766	0.40531	0.00031757	1.7794	0.0013942	783.5343979896222	29.038	0.12065	29.031	29.007	29.127	-0.0077229	495	58	1.3249949	0.034067154	1.3234755	270.03036		6.9427795	-0.0042677	0.00039465	0.00013669	NaN	32.869	117	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13301	+		28810	9304	16609	17072							0.12661366259192164
VLGWLMTP	8	Unmodified	_VLGWLMTP_					0	0	0		ENSG00000141349|ENST00000269097|G6PC3	ENSG00000141349|ENST00000269097|G6PC3	ENSG00000141349|ENST00000269097|G6PC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	458.75168155295006	2	458.751682	915.48881	1.0997	0.00050448	-2.3914	-0.001097	-1.2917	-0.00059256	458.7512996656519	55.604	0.12015	55.604	55.556	55.677	0	1323	49	0.8228144	0.029543579	0.8228144	334.52844	0	12.011414						171	6	4	NaN	NaN	NaN	0.84651	1	6336	6336		1.6704	0	1	16437			28811	3311	16610	17073	23002	23002					0.02768532002073698
VLHAASGN	8	Unmodified	_VLHAASGN_					0	0	0		ENSG00000013374|ENST00000568733|NUB1	ENSG00000013374|ENST00000568733|NUB1	ENSG00000013374|ENST00000568733|NUB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3998780682001	1	768.399878	767.392602	1.1223	0.0008624	-8.6854	-0.0066738	-7.563	-0.0058114	768.3928726743402	31.79	0.19309	31.79	31.742	31.935	0	540	61	1.2980826	0.035915613	1.2980826	264.63568	0	7.3219604						205	9	3	NaN	NaN	NaN	0.8439	1	4323	4323		3.1533	0	1	25030			28812	426	16611	17074	23003	23003					-0.0003989951366065725
VLHASAGI	8	Unmodified	_VLHASAGI_					0	0	0			REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	REV__ENST00000491027.5_1_7:105903822-105925330:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4410146014001	1	767.441015	766.433738	1.0662	0.00081826	-8.1385	-0.0062458	-7.0722	-0.0054275	767.4350819910042	35.627	0.14469	35.627	35.578	35.723	0	528	55	1.3052634	0.03231013	1.3052634	266.10544	0	6.5871277						142	7	2	NaN	NaN	NaN	0.8439	1	4310	4310		3.1533	0	1	18234	+		28813	8974	16612	17075	23004	23004					0.041178615257990714
VLIGKMLV	8	Unmodified	_VLIGKMLV_					0	0	0		ENST00000467061.1_1_3:185212393-185212549:-|nuORF	ENST00000467061.1_1_3:185212393-185212549:-|nuORF	ENST00000467061.1_1_3:185212393-185212549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.563772274	1	872.563772	871.556496	1.3176	0.0011497	-2.8585	-0.0024943	-1.5409	-0.0013446	872.5613985809063	29.256	0.096542	29.256	29.232	29.329	0	1212	49	0.8910048	0.02942884	0.8910048	181.26431	0	5.9869385						130	5	3	NaN	NaN	NaN	0.84887	1	5690	5690		0.32989	0	1	15605			28814	7120	16613	17076	23005	23005					0.1155798193285591
VLILPKIF	8	Unmodified	_VLILPKIF_					0	0	0		ENST00000356347.3_1_4:206567-247393:+|nuORF	ENST00000356347.3_1_4:206567-247393:+|nuORF	ENST00000356347.3_1_4:206567-247393:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.6386517766	1	942.638652	941.631375	-0.15647	-0.0001475	-1.1308	-0.0010659	-1.2872	-0.0012134	942.6373975619891	59.01	0.21602	59.01	58.89	59.106	-0.00045395	201	55	1.4997677	0.03193426	1.4982482	304.7569	0	6.4891357						218	10	3	NaN	NaN	NaN	0.84876	1	6725	6725		0.39566	0	1	23462			28815	6570	16614	17077	23006	23006					0.15822487735738378
VLKAKGGS	8	Unmodified	_VLKAKGGS_					0	0	0		ENST00000296721.8_1_5:148719909-148720053:+|nuORF	ENST00000296721.8_1_5:148719909-148720053:+|nuORF	ENST00000296721.8_1_5:148719909-148720053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.4723147298001	1	759.472315	758.465038	1.3781	0.0010466	6.1131	0.0046427	7.4912	0.0056894	759.4769511141685	29.304	0.096514	29.296	29.248	29.344	-0.0077229	453	58	1.3500742	0.034005404	1.3485547	275.29184	0	6.9339905						118	5	2	NaN	NaN	NaN	0.77891	1	4122	4122		12.049	0	1	11486			28816	6400	16615	17078	23007	23007					0.07614434559900474
VLKPLHFT	8	Unmodified	_VLKPLHFT_					0	0	0		nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion;ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	nc|ENSG00000009335|Q15386-2|UBE3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.79219530945005	2	477.792195	953.569838	1.4132	0.00067523	-0.64269	-0.00030707	0.77054	0.00036816	477.7917878837021	23.995	0.12061	23.995	23.947	24.068	0	1521	34	0.70049703	0.020458162	0.70049703	284.63016	0	8.312683						83	6	2	NaN	NaN	NaN	0.83582	1	7179	7179		4.4131	0	1	7685.5			28817	384	16616	17079	23008	23008					0.09119556036466747
VLKYIELTKY	10	Unmodified	_VLKYIELTKY_					0	0	0			REV__ENST00000554891.5_1_14:21702949-21737544:-|nuORF	REV__ENST00000554891.5_1_14:21702949-21737544:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3762890795999	2	635.376289	1268.73803	1.4404	0.0009152	0.72251	0.00045907	2.1629	0.0013743	635.3773096827622	41.474	0.409	41.474	41.426	41.835	0	1251	82	0.8670771	0.049701393	0.8670771	351.06946	0	20.123505						778	18	3	NaN	NaN	NaN	0.77928	1	18213	18213		0.69115	0	1	238290	+		28818	12751	16617	17080	23009	23009					0.11440573439585933
VLLDCLCCSS	10	2 Carbamidomethyl (C)	_VLLDC(Carbamidomethyl (C))LC(Carbamidomethyl (C))CSS_	VLLDC(0.946)LC(0.946)C(0.108)SS		VLLDC(12)LC(12)C(-12)SS		0	2	0			REV__ENST00000366663.9_1_1:230974722-230974869:-|nuORF	REV__ENST00000366663.9_1_1:230974722-230974869:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2536021046501	2	585.253602	1168.49265	2.0819	0.0012185	-10.459	-0.0061214	-8.3774	-0.0049029	585.2478994498023	25.129	0.2412	25.117	25.069	25.31	-0.012011	1197	121	0.9001988	0.07358003	0.8986794	364.8166	0	29.819214						738	11	5	NaN	NaN	NaN	0.13037	1	14887	14887		41.785	11.174	3	314080	+		28819	11853	16618	17081	23010	23010	6;7				-0.08485534348687906
VLLDCLCCSS	10	2 Carbamidomethyl (C)						0	2	0			REV__ENST00000366663.9_1_1:230974722-230974869:-|nuORF	REV__ENST00000366663.9_1_1:230974722-230974869:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.253602	1168.49265	2.0819	0.0012185	-10.459	-0.0061214	-8.3774	-0.0049029	585.2478994498023	25.129	0.2412	25.117	25.069	25.31	-0.012011	1197	121	0.9001988	0.07358003	0.8986794	364.8166		29.819214	-0.0061294	0.00027616	-0.00075972	NaN	41.785	738	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314080	+		28820	11853	16618	17081			6;7				-0.08485534348687906
VLLGASGL	8	Unmodified	_VLLGASGL_					0	0	0		OR5C1|p.A147V|1|0.34|ENSG00000148215|chr9:122789372-122789372|C/T|missense_variant	OR5C1|p.A147V|1|0.34|ENSG00000148215|chr9:122789372-122789372|C/T|missense_variant	OR5C1|p.A147V|1|0.34|ENSG00000148215|chr9:122789372-122789372|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.4505166552002	1	729.450517	728.44324	1.4767	0.0010772	4.528	0.0033029	6.0047	0.0043801	729.4537710796001	54.548	0.072338	54.548	54.524	54.596	0	546	55	1.294491	0.03233087	1.294491	264.15112	0	6.5973816						120	4	2	NaN	NaN	NaN	0.84887	1	3744	3744		0.32989	0	1	13307			28821	8083	16619	17082	23011	23011					0.06815629811342205
VLLKDCPL	8	Unmodified	_VLLKDCPL_					0	0	0			REV__ENSG00000185899|ENST00000332690|TAS2R60	REV__ENSG00000185899|ENST00000332690|TAS2R60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	450.76478892819995	2	450.764789	899.515025	-0.27334	-0.00012321	-2.294	-0.0010341	-2.5674	-0.0011573	450.76403844740247	55.602	0.072079	55.602	55.578	55.65	-0.00059128	1299	40	0.8375814	0.023992479	0.83606195	340.62158	0	9.757111						59	4	2	NaN	NaN	NaN	0.84692	1	5948	5948		1.4396	0	1	4992.8	+		28822	10976	16620	17083	23012	23012					0.06124801173530159
VLLKSSLL	8	Unmodified	_VLLKSSLL_					0	0	0		ENST00000539309.5_1_12:4677127-4699979:+|nuORF;DYRK4|p.R355Dfs*12|1|0.26|ENSG00000010219|chr12:4610196-4610196|A/-|frameshift_variant;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4	ENST00000539309.5_1_12:4677127-4699979:+|nuORF	ENST00000539309.5_1_12:4677127-4699979:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.5815308282002	1	872.581531	871.574254	-0.3161	-0.00027583	5.1352	0.0044809	4.8191	0.0042051	872.5857705191805	54.473	0.07201	54.473	54.449	54.521	-0.0006218	336	40	1.419741	0.023172855	1.4182216	288.82928	0	4.714264						71	4	2	NaN	NaN	NaN	0.84887	1	5556	5556		0.32989	0	1	5250.3			28823	278	16621	17084	23013	23013					0.13333020459390355
VLLLLRDTSH	10	Unmodified	_VLLLLRDTSH_					0	0	0			REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF	REV__ENST00000391440.2_1_X:134155474-134155804:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.5679122434667	3	389.567912	1165.68191	1.9874	0.00077423	1.0466	0.00040774	3.0341	0.001182	389.5678861864846	25.419	0.048262	25.419	25.395	25.443	0	1347	28	0.8080346	0.016631722	0.8080346	491.20767	0	10.110535						33	3	2	NaN	NaN	NaN	0.78196	1	15335	15335		0.039382	0	1	2088.5	+		28824	11977	16622	17085	23014	23014					0.1056936532279451
VLLMHMPA	8	Unmodified	_VLLMHMPA_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B;ENST00000462073.5_1_22:30689736-30691829:-|nuORF;TBC1D10A|p.K472Rfs*22|1|0.17|ENSG00000099992|chr22:30292474-30292489|GGGGGCTGAGTCCTTC/-|frameshift_variant;TBC1D10A|p.P465Afs*35|1|0.1|ENSG00000099992|chr22:30292496-30292509|ACATGCTGTGGGGG/-|frameshift_variant;ENSG00000099992|ENST00000215790|TBC1D10A;nc|ENSG00000099992|Q9BXI6-2|TBC1D10A	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.4841417445001	1	911.484142	910.476865	1.0748	0.00097968	4.3685	0.0039818	5.4434	0.0049615	911.4879966767958	35.023	0.072395	35.023	34.999	35.072	0	336	79	1.419741	0.046368003	1.419741	288.63748	0	9.426727						126	4	3	NaN	NaN	NaN	0.81214	1	6234	6234		7.5902	0	1	12745			28825	4663	16623	17086	23015	23015					0.01804591987229287
VLLPNIDL	8	Unmodified	_VLLPNIDL_					0	0	0		PKHD1L1|p.R1654Q|2|0.24|ENSG00000205038|chr8:109444830-109444830|G/A|missense_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.R1654Q|2|0.24|ENSG00000205038|chr8:109444830-109444830|G/A|missense_variant	PKHD1L1|p.R1654Q|2|0.24|ENSG00000205038|chr8:109444830-109444830|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.5451453219001	1	896.545145	895.537869	1.9158	0.0017176	-0.18462	-0.00016552	1.7312	0.0015521	896.5441861583489	44.951	0.047909	44.951	44.927	44.975	0	351	31	1.4108255	0.017835736	1.4108255	286.8962	0	3.6269531						34	3	2	NaN	NaN	NaN	0.81807	1	6002	6002		6.794	0	1	1875.1			28826	5914	16624	17087	23016	23016					0.08592143562668753
VLLQVLIGT	9	Unmodified	_VLLQVLIGT_					0	0	0			REV__ENST00000487805.6_1_3:49750857-49758735:+|nuORF	REV__ENST00000487805.6_1_3:49750857-49758735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.6186446160003	1	955.618645	954.611368	1.2042	0.0011508	-0.73943	-0.00070662	0.46481	0.00044418	955.6184136996784	32.658	0.072395	32.655	32.631	32.703	-0.0031052	225	55	1.4855686	0.031968117	1.4840492	301.81244	0	6.494751						111	4	2	NaN	NaN	NaN	0.56671	1	7063	7063		6.8632	1.9535	1	11681	+		28827	10316	16625	17088	23017	23017					0.13224692005155703
VLLWTVLLP	9	Unmodified	_VLLWTVLLP_					0	0	0		ENST00000361883.5_1_17:39182898-39183009:-|nuORF	ENST00000361883.5_1_17:39182898-39183009:-|nuORF	ENST00000361883.5_1_17:39182898-39183009:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3389783265501	2	527.338978	1052.6634	1.477	0.0007789	7.4531	0.0039303	8.9301	0.0047092	527.3428655835309	21.488	0.14464	21.488	21.44	21.585	0	1191	67	0.90387505	0.040451527	0.90387505	366.77618	0	16.41449						181	7	3	NaN	NaN	NaN	0.39244	1	10766	10766		14.042	2.4931	1	18987			28828	6610	16626	17089	23018	23018					0.13917855418890213
VLMRRRPAR	9	Unmodified	_VLMRRRPAR_					0	0	0		nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.85620093725	2	577.856201	1153.69785	1.7555	0.0010145	-1.8891	-0.0010916	-0.13354	-7.7167E-05	577.8557840497477	27.929	0.16891	27.929	27.857	28.026	0	1425	55	0.7599118	0.033370078	0.7599118	308.00958	0	13.525665						152	8	3	NaN	NaN	NaN	0.6907	1	14942	14942		0	0	1	14520			28829	3329	16627	17090	23019	23019					0.12714793078703224
VLNTPLHES	9	Unmodified	_VLNTPLHES_					0	0	0		CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.26928131914997	2	505.269281	1008.52401	1.8434	0.00093141	3.2181	0.001626	5.0615	0.0025574	505.27070776617927	20.213	0.072203	20.198	20.174	20.246	-0.014141	1311	43	0.83019954	0.025839448	0.8286801	337.0703	0	10.491119						60	4	2	NaN	NaN	NaN	0.67082	1	8754	8754		1.7022	0.031835	1	4128.8			28830	89	16628	17091	23020	23020					0.020088660635678934
VLNTPLHES	9	Unmodified						0	0	0		CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	CDC5L|p.G382V|1|0.27|ENSG00000096401|chr6:44419501-44419501|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	505.269281	1008.52401	1.6865	0.00085216	7.2854	0.0036811	8.9719	0.0045332	505.27252676906255	20.213	0.072109	20.213	20.165	20.237	0	1314	40	0.8283535	0.023995101	0.8283535	336.3208		9.742279	0.0071653	0.0015909	-0.00016327	NaN	1.7022	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4927.8			28831	89	16628	17091							0.020088660635678934
VLNWAITST	9	Unmodified	_VLNWAITST_					0	0	0			REV__nc|ENSG00000054983|P54803-5|GALC	REV__nc|ENSG00000054983|P54803-5|GALC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.77419952154986	2	502.7742	1003.53385	1.7555	0.00088264	-2.6787	-0.0013468	-0.92314	-0.00046413	502.7729951761948	20.333	0.16829	20.333	20.261	20.429	0	1113	190	0.9515937	0.11547047	0.9515937	386.3836	0	46.885437						802	8	3	NaN	NaN	NaN	0.6907	1	8731	8731		0	0	1	129670	+		28832	8505	16629	17092	23021	23021					0.03222054068919533
VLPAAGVP	8	Unmodified	_VLPAAGVP_					0	0	0		ENST00000535177.1_1_11:61120996-61124198:-|nuORF;ENST00000538263.5_1_11:61124003-61124198:-|nuORF;ENST00000542411.5_1_11:61124000-61124198:-|nuORF;ENST00000544118.5_1_11:61117873-61125280:-|nuORF;ENST00000546151.5_1_11:61120455-61125280:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	ENST00000535177.1_1_11:61120996-61124198:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4399519689001	1	723.439952	722.432676	1.4958	0.0010821	-3.4349	-0.0024849	-1.9391	-0.0014028	723.437301648914	29.231	0.33785	29.224	29.175	29.513	-0.0077209	645	169	1.2351195	0.10111344	1.2336	252.07463	0	20.63617						572	15	4	NaN	NaN	NaN	0.84651	1	3570	3570		1.6704	0	1	294550			28833	7466	16630	17093	23022	23022					0.06035647156909363
VLPAPPAS	8	Unmodified	_VLPAPPAS_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.4348665910001	1	751.434867	750.42759	0.7277	0.00054682	-0.52563	-0.00039497	0.20207	0.00015184	751.4338753156766	31.235	0.096497	31.235	31.211	31.308	0	594	55	1.265731	0.03237927	1.265731	258.14267	0	6.603668						113	5	2	NaN	NaN	NaN	0.76633	1	4073	4073		13.737	0	1	11440	+		28834	9057	16631	17094	23023	23023					0.04239343294284481
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.3238595786001	2	571.32386	1140.63317	1.6052	0.00091707	-0.91701	-0.00052391	0.68815	0.00039316	571.3238371577227	26.795	0.1694	26.795	26.746	26.915	0	1191	61	0.90387505	0.036758184	0.90387505	366.41074	0	14.90094						305	8	4	NaN	NaN	NaN	0.14301	1	14481	14481		29.598	4.6373	1	69562			28835	2906	16632	17095	23024	23024					0.06847496753721316
VLPDADTLLHF	11	Unmodified	_VLPDADTLLHF_					0	0	0		APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.8322457167001	2	620.832246	1239.64994	0.57044	0.00035415	-0.96302	-0.00059788	-0.39258	-0.00024373	620.8318994966622	29.883	0.096512	29.876	29.852	29.948	-0.0070667	1113	91	0.9515937	0.055036247	0.95007426	385.38657	0	22.289154						180	5	2	NaN	NaN	NaN	0.51407	1	16783	16783		17.97	10.382	1	24171			28836	36	16633	17096	23025	23025					0.039699528490018565
VLPDADTLLHF	11	Unmodified						0	0	0		APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.832246	1239.64994	1.4724	0.00091409	-0.89398	-0.00055501	0.57837	0.00035907	620.831160121578	29.884	0.12066	29.884	29.836	29.956	0	1113	70	0.9515937	0.04217851	0.9515937	385.38657		17.081879	0.0039968	4.6297E-05	0.00075972	NaN	17.97	191	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19486			28837	36	16633	17096							0.039699528490018565
VLPDASHKML	10	Unmodified	_VLPDASHKML_					0	0	0		ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000138347|Q86TC9-2|MYPN	ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.8024340322501	2	555.802434	1109.59032	1.1341	0.00063033	-8.7077	-0.0048397	-7.5736	-0.0042094	555.7972659305174	29.546	0.096539	29.546	29.498	29.594	0	1227	55	0.88180584	0.03312534	0.88180584	357.58383	0	13.43277						107	5	2	NaN	NaN	NaN	0.71559	1	13265	13265		6.9844	0.12115	1	13706			28838	3150	16634	17097	23026	23026					0.03990358633973301
VLPDASHKML	10	Unmodified						0	0	0		ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000138347|Q86TC9-2|MYPN	ENSG00000138347|ENST00000358913|MYPN	ENSG00000138347|ENST00000358913|MYPN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	555.802434	1109.59032	1.0887	0.00060511	-7.4633	-0.0041481	-6.3745	-0.003543	555.7994396327429	29.545	0.0965	29.538	29.514	29.61	-0.0070648	1224	52	0.883646	0.03127992	0.88212657	358.33005		12.684418	-0.003949	0.00068782	0.00016038	NaN	6.9844	132	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14017			28839	3150	16634	17097							0.03990358633973301
VLPDCCVGLI	10	Unmodified	_VLPDCCVGLI_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2668384781501	2	516.266838	1030.51912	1.1152	0.00057573	2.8805	0.0014871	3.9957	0.0020628	516.2691482297563	21.994	0.14445	21.98	21.932	22.077	-0.013897	1284	79	0.8468043	0.047966838	0.8452849	343.71326	0	19.469452						184	7	2	NaN	NaN	NaN	0.68669	1	9594	9594		8.962	0.042884	1	20914	+		28840	11206	16635	17098	23027	23027					0.005085226049459379
VLPDMFFSF	9	Unmodified	_VLPDMFFSF_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.5277806982	1	1102.52778	1101.5205	1.5994	0.0017634	-1.016	-0.0011201	0.5834	0.00064321	1102.527193885579	37.816	0.16835	37.819	37.747	37.915	0.0028229	63	82	1.5811787	0.047691107	1.5796592	320.62674	0	9.670654						259	8	2	NaN	NaN	NaN	0.028349	1	12563	12563		61.271	21.117	1	22514			28841	1414	16636	17099	23028	23028					-0.0261952003463648
VLPDMFFSF	9	Unmodified						0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1102.52778	1101.5205	0.89586	0.00098771	0.89748	0.00098949	1.7933	0.0019772	1102.5287260874222	37.795	0.21632	37.795	37.747	37.963	0	63	115	1.5811787	0.06716704	1.5811787	320.62674		13.619934	-0.012166	0.0009587	0.00075972	NaN	61.271	331	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30108			28842	1414	16636	17099							-0.0261952003463648
VLPESLPVL	9	Unmodified	_VLPESLPVL_					0	0	0		nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	nc|ENSG00000147874|Q7Z4H7-3|HAUS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5870101366	1	966.58701	965.579734	1.069	0.0010333	-0.20141	-0.00019468	0.86761	0.00083862	966.5870709425523	31.017	0.24136	31.012	30.891	31.133	-0.0050716	234	64	1.4802408	0.037298203	1.4787214	300.68143	0	7.5763855						322	11	3	NaN	NaN	NaN	0.03623	1	7363	7363		52.758	5.7181	1	29521			28843	3610	16637	17100	23029	23029					0.09556699251186274
VLPGKKKKKT	10	Unmodified	_VLPGKKKKKT_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.7670401876999	1	1126.76704	1125.75976	3.2072	0.0036138	-4.0251	-0.0045353	-0.81788	-0.00092156	1126.7620922242606	53.65	0.27413	53.65	53.626	53.9	0	54	1135	1.5864743	0.6799616	1.5864743	321.61484	0	137.84387						8135	11	4	NaN	NaN	NaN	0.77513	1	13930	13930		1.7022	0.77633	1	4586800			28844	255	16638	17101	23030	23030					0.20191422978814444
VLPGKKKKKT	10	Unmodified	_VLPGKKKKKT_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.7670401876999	1	1126.76704	1125.75976	0.60633	0.00068319	-1.7185	-0.0019363	-1.1121	-0.0012531	1126.7639534773066	53.753	0.25008	53.753	53.647	53.897	-0.00059128	54	1108	1.5864743	0.6634499	1.5849549	321.61484	0	134.49657						4510	10	6	NaN	NaN	NaN	0.77928	1	13496	13496		0.69115	0.46101	1	2449400			28845	255	16638	17101	23031	23031					0.20191422978814444
VLPHWLSWLP	10	Unmodified	_VLPHWLSWLP_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000468620.1_1_13:98670849-98672064:+|nuORF;ENST00000493122.1_1_13:98671845-98673393:+|nuORF;ENSG00000137040|ENST00000259569|RANBP6	nc|ENSG00000065150|O00410-2|IPO5;ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3504086801001	2	624.350409	1246.68626	0.70284	0.00043882	-0.24528	-0.00015314	0.45756	0.00028568	624.3498491748117	29.038	0.14478	29.031	28.91	29.055	-0.0077229	1134	97	0.9387595	0.058743358	0.93724006	380.16522	0	23.789032						191	7	2	NaN	NaN	NaN	0.75966	1	16954	16954		3.9685	2.0439	1	21065			28846	3064;681	16639	17102	23032	23032					0.07278874536382318
VLPIPFPSF	9	Unmodified	_VLPIPFPSF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5815308282001	1	1016.58153	1015.57425	1.5507	0.0015765	0.13241	0.0001346	1.6832	0.0017111	1016.5821852509852	36.926	0.12011	36.928	36.88	37	0.0022469	183	64	1.510409	0.03722298	1.5088896	306.59692	0	7.5558777						185	6	3	NaN	NaN	NaN	0.11467	1	9042	9042		33.698	9.8479	1	16855			28847	5168	16640	17103	23033	23033					0.06709020459379644
VLPIPFPSF	9	Unmodified						0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1016.58153	1015.57425	1.9203	0.0019522	1.159	0.0011783	3.0794	0.0031304	1016.5819487667809	36.928	0.12023	36.928	36.88	37	0	186	67	1.5086359	0.039001822	1.5086359	306.237		7.9169617	-3.832E-05	0.0005541	-0.00012683	NaN	33.698	184	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17803			28848	5168	16640	17103							0.06709020459379644
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	349.89395969210005	3	349.89396	1046.66005	1.8677	0.00065349	-3.1246	-0.0010933	-1.2569	-0.00043979	349.8927457764998	19.756	0.096085	19.756	19.708	19.804	0	1467	34	0.7339432	0.020418286	0.7339432	446.75894	0	12.4288025						78	5	3	NaN	NaN	NaN	0.3106	1	10506	10506		18.233	7.9898	1	8578.2			28849	4641	16641	17104	23034	23034					0.13858605364907817
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.3373013048501	2	524.337301	1046.66005	1.5711	0.00082378	-1.3517	-0.00070877	0.21934	0.00011501	524.3365669422251	19.756	0.072033	19.756	19.708	19.78	0	1212	37	0.8910048	0.0220716	0.8910048	361.58047	0	8.956909						91	4	3	NaN	NaN	NaN	0.05973	1	10507	10507		48.002	19.107	1	15594			28850	4641	16641	17104	23035	23035					0.13858605364907817
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	349.89395969210005	3	349.89396	1046.66005	1.9458	0.00068083	-1.5432	-0.00053994	0.40265	0.00014088	349.8933343740029	19.876	0.12027	19.861	19.813	19.934	-0.014141	1467	34	0.7339432	0.020420492	0.7324238	446.7589	0	12.430176						95	6	2	NaN	NaN	NaN	0.1507	1	10298	10298		28.495	1.4488	1	8259.7			28851	4641	16641	17104	23036	23036					0.13858605364907817
VLPKLLSLLPL	11	Unmodified	_VLPKLLSLLPL_					0	0	0		ENSG00000138074|ENST00000310574|SLC5A6;ENST00000461757.1_1_2:27423306-27424138:-|nuORF	ENSG00000138074|ENST00000310574|SLC5A6	ENSG00000138074|ENST00000310574|SLC5A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.4152172748502	2	603.415217	1204.81588	-0.58758	-0.00035455	2.5347	0.0015295	1.9471	0.0011749	603.4145918620394	57.858	0.023991	57.858	57.858	57.882	-0.00050735	879	76	1.0939503	0.04539454	1.0924308	443.1807	0	18.390228						82	2	3	NaN	NaN	NaN	0.78138	1	15955	15955		0	0	1	7051.4			28852	3134	16642	17105	23037	23037					0.22166631095660705
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.8600779094	2	536.860078	1071.7056	2.4261	0.0013025	-1.8769	-0.0010076	0.5492	0.00029484	536.8593377781424	22.935	0.19256	22.935	22.911	23.103	0	1170	55	0.91673553	0.03306091	0.91673553	371.90942	0	13.412476						338	9	5	NaN	NaN	NaN	0.028404	1	11645	11645		69.782	25.48	1	155840			28853	5727	16643	17106	23038	23038					0.17261830827260383
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	ENST00000444468.1_1_X:128542382-128542532:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.8600779094	2	536.860078	1071.7056	1.6443	0.00088275	-2.1348	-0.0011461	-0.49055	-0.00026336	536.8590308071173	23.079	0.26517	23.065	22.993	23.258	-0.013294	1173	46	0.91489893	0.027552247	0.9133795	371.16434	0	11.177673						425	12	5	NaN	NaN	NaN	0.061945	1	11343	11343		47.482	24.147	1	172130			28854	5727	16643	17106	23039	23039					0.17261830827260383
VLPLMLPSF	9	Unmodified	_VLPLMLPSF_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5849016466002	1	1016.5849	1015.57763	2.0465	0.0020804	-0.034074	-3.4639E-05	2.0124	0.0020458	1016.5853197444021	36.784	0.072147	36.784	36.76	36.832	0	162	82	1.5228153	0.04782784	1.5228153	309.11526	0	9.708527						210	4	3	NaN	NaN	NaN	0.11467	1	9215	9215		33.698	0	1	24852			28855	5099	16644	17107	23040	23040					0.07045947241738304
VLPLMLPSF	9	Unmodified	_VLPLMLPSF_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5849016466002	1	1016.5849	1015.57763	1.6281	0.0016551	-0.63899	-0.00064959	0.98913	0.0010055	1016.5842074399869	36.782	0.072254	36.783	36.759	36.832	0.0016747	162	85	1.5228153	0.049591303	1.5212959	309.11526	0	10.066498						204	4	3	NaN	NaN	NaN	0.17818	1	9043	9043		26.732	4.6052	1	22314			28856	5099	16644	17107	23041	23041					0.07045947241738304
VLPLMLPSF	9	Oxidation (M)	_VLPLM(Oxidation (M))LPSF_		VLPLM(1)LPSF		VLPLM(42)LPSF	0	0	1		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5798162687001	1	1032.57982	1031.57254	1.847	0.0019072	4.2798	0.0044192	6.1268	0.0063264	1032.5850762568937	34.517	0.19304	34.517	34.421	34.614	0	141	97	1.5352125	0.05663371	1.5352125	311.56702	0	11.493652						452	9	3	NaN	NaN	NaN	0.062072	1	9860	9860		41.785	7.3457	1	63572			28857	5099	16644	17108	23042	23042		535			0.058016433791181043
VLPLMLPSF	9	Oxidation (M)	_VLPLM(Oxidation (M))LPSF_		VLPLM(1)LPSF		VLPLM(59)LPSF	0	0	1		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5798162687001	1	1032.57982	1031.57254	1.2273	0.0012673	4.8235	0.0049807	6.0508	0.0062479	1032.5856362468176	34.516	0.19299	34.515	34.419	34.612	-0.0006485	141	121	1.5352125	0.07080722	1.5336931	311.567	0	14.370117						428	9	3	NaN	NaN	NaN	0.030391	1	9651	9651		58.599	8.7663	1	61272			28858	5099	16644	17108	23043	23043		535			0.058016433791181043
VLPLSSSG	8	Unmodified	_VLPLSSSG_					0	0	0		ENST00000373578.6_1_20:36032386-36033025:+|nuORF	ENST00000373578.6_1_20:36032386-36033025:+|nuORF	ENST00000373578.6_1_20:36032386-36033025:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4246958352002	1	759.424696	758.417419	2.1808	0.0016562	4.952	0.0037606	7.1328	0.0054168	759.4282331924584	49.72	0.40726	49.72	49.648	50.056	0	498	751	1.3232021	0.44748247	1.3232021	269.81268	0	91.24567						2613	18	4	NaN	NaN	NaN	0.84727	1	4198	4198		1.2418	0	1	407270			28859	6679	16645	17109	23044	23044					0.02854735569053446
VLPPAPKL	8	Unmodified	_VLPPAPKL_					0	0	0			REV__ENSG00000107554|ENST00000324109|DNMBP	REV__ENSG00000107554|ENST00000324109|DNMBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	834.5447513914002	1	834.544751	833.537475	1.2418	0.0010363	-0.20098	-0.00016773	1.0408	0.00086857	834.5433562140829	35.482	0.048229	35.482	35.458	35.506	0	387	37	1.389409	0.0214324	1.389409	282.85892	0	4.3632812						44	3	2	NaN	NaN	NaN	0.75682	1	5180	5180		15.013	0	1	2725.5	+		28860	9015	16646	17110	23045	23045					0.11404768633474305
VLQSFSFVS	9	Unmodified	_VLQSFSFVS_					0	0	0		ENST00000317868.8_1_1:63249823-63269403:+|nuORF	ENST00000317868.8_1_1:63249823-63269403:+|nuORF	ENST00000317868.8_1_1:63249823-63269403:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.26875000290005	2	507.26875	1012.52295	0.88389	0.00044837	0.72012	0.0003653	1.604	0.00081366	507.26891783440544	30.462	0.14477	30.456	30.432	30.577	-0.0057545	1302	37	0.8357362	0.022143304	0.8342168	339.30026	0	8.989929						124	7	3	NaN	NaN	NaN	0.48181	1	8904	8904		10.36	0.61416	1	11610			28861	6471	16647	17111	23046	23046					0.017186516946708252
VLQSFSFVS	9	Unmodified						0	0	0		ENST00000317868.8_1_1:63249823-63269403:+|nuORF	ENST00000317868.8_1_1:63249823-63269403:+|nuORF	ENST00000317868.8_1_1:63249823-63269403:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	507.26875	1012.52295	1.4881	0.00075484	1.3887	0.00070443	2.8767	0.0014593	507.2694631293924	30.487	0.12066	30.487	30.439	30.56	0	1305	40	0.83389086	0.023989916	0.83389086	338.55106		9.739624	0.015437	0.0003943	-0.00016297	NaN	10.36	105	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10615			28862	6471	16647	17111							0.017186516946708252
VLRQKLADRD	10	Unmodified	_VLRQKLADRD_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.23856613339996	3	405.238566	1212.69387	1.2562	0.00050907	1.7611	0.00071365	3.0173	0.0012227	405.23891837198573	35.239	0.072395	35.239	35.191	35.263	-4.1962E-05	1590	37	0.65766495	0.02237755	0.6561455	399.6163	0	13.5972595						60	4	2	NaN	NaN	NaN	0.77879	1	16137	16137		0.81135	0.095235	1	4392.5	+		28863	11399	16648	17112	23047	23047					0.09602982065962351
VLSAGKGK	8	Unmodified	_VLSAGKGK_					0	0	0		ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1;nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	ENST00000555945.1_1_14:45431624-45465140:+|nuORF	ENST00000555945.1_1_14:45431624-45465140:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.4723147298	1	759.472315	758.465038	0.028464	2.1618E-05	-1.4584	-0.0011076	-1.4299	-0.001086	759.4713310918349	54.21	0.095844	54.209	54.161	54.257	-0.0006218	435	43	1.360811	0.02504456	1.3592916	277.4812	0	5.1068115						75	5	2	NaN	NaN	NaN	0.84727	1	4121	4121		1.2418	0	1	6677.4			28864	5795	16649	17113	23048	23048					0.07614434559889105
VLSAGKGK	8	Unmodified						0	0	0		ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1;nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	ENST00000555945.1_1_14:45431624-45465140:+|nuORF	ENST00000555945.1_1_14:45431624-45465140:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	759.472315	758.465038	1.7099	0.0012986	-4.6351	-0.0035203	-2.9253	-0.0022216	759.4692399559348	54.188	0.071918	54.188	54.164	54.236	0	438	43	1.359022	0.025049925	1.359022	277.11642		5.10791	-0.010683	-0.0010907	-0.00013478	NaN	1.2418	72	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6821.2			28865	5795	16649	17113							0.07614434559889105
VLSAPGPHA	9	Unmodified	_VLSAPGPHA_					0	0	0		ENSG00000133561|ENST00000328902|GIMAP6;nc|ENSG00000133561|Q6P9H5-2|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.73487739579997	2	424.734877	847.455202	0.96372	0.00040933	-9.8815	-0.004197	-8.9178	-0.0037877	424.73068098732307	13.517	0.16797	13.507	13.459	13.627	-0.010098	1407	49	0.77102906	0.029636562	0.7695096	313.84604	0	12.063507						185	8	2	NaN	NaN	NaN	0.29681	1	5226	5226		19.118	1.1486	1	43008			28866	2826	16650	17114	23049	23049					0.025372465545160594
VLSCQHLIRTI	11	Unmodified	_VLSCQHLIRTI_					0	0	0		ENST00000545653.5_1_5:39394498-39425099:-|nuORF	ENST00000545653.5_1_5:39394498-39425099:-|nuORF	ENST00000545653.5_1_5:39394498-39425099:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.8686396105	2	641.86864	1281.72273	0.92746	0.00059531	-9.4301	-0.0060529	-8.5026	-0.0054576	642.363719304573	38.9	0.14415	38.9	38.828	38.972	0	1218	46	0.8873258	0.02759397	0.8873258	359.22876	0	11.171265						238	7	5	NaN	NaN	NaN	0.75376	1	18460	18460		3.9281	0.7165	1	24034			28867	7520	16651	17115	23050	23050					0.09313383370772499
VLSCVFWIF	9	Unmodified	_VLSCVFWIF_					0	0	0			REV__ENSG00000163393|ENST00000369503|SLC22A15	REV__ENSG00000163393|ENST00000369503|SLC22A15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.29371354315	2	557.293714	1112.57287	1.1898	0.00066304	-5.4627	-0.0030443	-4.273	-0.0023813	557.2907676710996	24.526	0.1447	24.526	24.478	24.623	0	1245	88	0.87076044	0.053354144	0.87076044	353.09317	0	21.635101						261	7	3	NaN	NaN	NaN	0.27442	1	13382	13382		20.555	1.4371	1	37803	+		28868	10278	16652	17116	23051	23051					0.021090630989647252
VLSDMAVQ	8	Unmodified	_VLSDMAVQ_					0	0	0			REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1	REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	862.433880313	1	862.43388	861.426604	1.3461	0.0011609	-4.676	-0.0040328	-3.33	-0.0028719	862.4294693484684	28.145	0.048269	28.137	28.112	28.161	-0.0089798	423	46	1.3679651	0.02682054	1.3664457	278.34705	0	5.4573364						66	3	2	NaN	NaN	NaN	0.74229	1	5414	5414		16.417	1.2413	1	5858.4	+		28869	9966	16653	17117	23052	23052					-0.009652391369286306
VLSGVLVTF	9	Unmodified	_VLSGVLVTF_					0	0	0			REV__ENST00000285013.10_2_17:33774341-33775762:-|nuORF	REV__ENST00000285013.10_2_17:33774341-33775762:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5607953861002	1	934.560795	933.553519	1.3682	0.0012787	-0.48467	-0.00045295	0.88352	0.00082571	934.5601024886021	32.297	0.096561	32.297	32.273	32.37	0	288	46	1.4482387	0.026698232	1.4482387	294.32278	0	5.425812						84	5	2	NaN	NaN	NaN	0.45297	1	6700	6700		11.548	0	1	5333.5	+		28870	11614	16654	17118	23053	23053					0.08408430079714435
VLSGVLVTF	9	Unmodified	_VLSGVLVTF_					0	0	0			REV__ENST00000285013.10_2_17:33774341-33775762:-|nuORF	REV__ENST00000285013.10_2_17:33774341-33775762:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5607953861002	1	934.560795	933.553519	1.4081	0.0013159	1.0862	0.0010151	2.4943	0.002331	934.5620509383365	32.177	0.048256	32.177	32.177	32.225	0	291	37	1.446459	0.021357417	1.446459	293.9611	0	4.3404236						50	3	2	NaN	NaN	NaN	0.45297	1	6703	6703		11.548	0	1	3754.3	+		28871	11614	16654	17118	23054	23054					0.08408430079714435
VLSKSATL	8	Unmodified	_VLSKSATL_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	818.4981951293001	1	818.498195	817.490919	1.8403	0.0015063	4.3403	0.0035525	6.1806	0.0050588	818.5020494896723	35.964	0.1687	35.964	35.916	36.085	0	408	100	1.3769034	0.059018016	1.3769034	280.4022	0	12.018829						343	8	3	NaN	NaN	NaN	0.80191	1	4986	4986		8.962	0.67169	1	65613	+		28872	11251	16655	17119	23055	23055					0.07487284011529027
VLSKSRTF	8	Unmodified	_VLSKSRTF_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	937.5465423054002	1	937.546542	936.539266	0.64622	0.00060586	0.23517	0.00022049	0.88139	0.00082635	937.5467199351674	47.826	0.095913	47.832	47.76	47.856	0.0061035	288	34	1.4482387	0.019574523	1.4467193	294.30914	0	3.9779053						59	5	2	NaN	NaN	NaN	0.83211	1	6616	6616		4.9097	0.49665	1	3700	+		28873	13117	16656	17120	23056	23056					0.06845777651426488
VLSNYGLN	8	Unmodified	_VLSNYGLN_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.23216753135	2	440.232168	878.449782	0.80482	0.00035431	-8.9925	-0.0039588	-8.1877	-0.0036045	440.2285319877928	37.504	0.16865	37.506	37.458	37.627	0.0028229	1431	58	0.75620437	0.03521824	0.7546849	307.63864	0	14.327454						229	8	3	NaN	NaN	NaN	0.83582	1	5657	5657		4.4131	0.83987	1	25519	+		28874	10053	16657	17121	23057	23057					0.005695229720458883
VLSNYGLN	8	Unmodified						0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	440.232168	878.449782	0.46605	0.00020517	-8.1812	-0.0036016	-7.7151	-0.0033964	440.2287403376593	37.53	0.21675	37.53	37.458	37.675	0	1434	46	0.75435036	0.027812898	0.75435036	306.8844		11.314819	0.011886	0.00036	-0.00016728	NaN	4.4131	218	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27620	+		28875	10053	16657	17121							0.005695229720458883
VLSNYGLN	8	Unmodified						0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	440.232168	878.449782	0.80482	0.00035431	-8.9925	-0.0039588	-8.1877	-0.0036045	440.2285319877928	37.504	0.16865	37.506	37.458	37.627	0.0028229	1431	58	0.75620437	0.03521824	0.7546849	307.63864		14.327454	-0.011886	-0.00035434	0.00016728	NaN	4.4131	229	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25519	+		28876	10053	16657	17121							0.005695229720458883
VLSSDDSVI	9	Unmodified	_VLSSDDSVI_					0	0	0			REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	REV__tr|U7T8F8|U7T8F8_FUSNU[Citrate[pro-3S]-lyase]ligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00040PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4727682398001	1	934.472768	933.465492	1.4873	0.0013898	-0.045296	-4.2328E-05	1.442	0.0013475	934.4771793789645	24.478	0.21705	24.478	24.406	24.623	0	330	106	1.4233059	0.062375307	1.4233059	289.2561	0	12.676422						454	10	5	NaN	NaN	NaN	0.14301	1	6687	6687		29.598	0	1	70718	+		28877	13636	16658	17122	23058	23058					-0.003902353015632798
VLSTPLPG	8	Unmodified	_VLSTPLPG_					0	0	0			REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.23417890405005	2	392.234179	782.453805	0.78752	0.00030889	-9.2285	-0.0036198	-8.441	-0.0033109	392.2306115288549	39.863	0.43334	39.863	39.742	40.176	0	1410	94	0.76917666	0.05742395	0.76917666	313.50586	0	23.405212						804	19	3	NaN	NaN	NaN	0.82332	1	4532	4532		6.0903	0	1	129200	+		28878	11937	16659	17123	23059	23059					0.05387612465767688
VLSTPLPG	8	Unmodified						0	0	0			REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	REV__ENST00000375946.8_1_10:27443943-27444111:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	392.234179	782.453805	0.78752	0.00030889	-9.2285	-0.0036198	-8.441	-0.0033109	392.2306115288549	39.863	0.43334	39.863	39.742	40.176	0	1410	94	0.76917666	0.05742395	0.76917666	313.50586		23.405212	-0.0019878	0.00019537	-0.00016647	NaN	6.0903	804	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129200	+		28879	11937	16659	17123							0.05387612465767688
VLSVIIKG	8	Unmodified	_VLSVIIKG_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.5553160777002	1	828.555316	827.54804	-0.45042	-0.0003732	4.6353	0.0038406	4.1849	0.0034674	828.5591726151483	54.306	0.11979	54.305	54.257	54.377	-0.00061798	390	49	1.3876231	0.028576732	1.3861036	282.52844	0	5.81839						166	6	3	NaN	NaN	NaN	0.84887	1	4999	4999		0.32989	0	1	17693			28880	974	16660	17124	23060	23060					0.1273675128791183
VLSVIIKG	8	Unmodified						0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	828.555316	827.54804	1.9171	0.0015884	2.7195	0.0022532	4.6365	0.0038416	828.5572311104553	54.308	0.11988	54.308	54.26	54.38	0	393	49	1.3858368	0.028579712	1.3858368	282.1648		5.8190002	0.0013084	-0.0011099	-0.00013335	NaN	0.32989	156	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15615			28881	974	16660	17124							0.1273675128791183
VLSVVLTF	8	Unmodified	_VLSVVLTF_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	877.5393316625	1	877.539332	876.532055	-0.54081	-0.00047458	-4.0487	-0.0035529	-4.5895	-0.0040274	877.5356836367857	56.059	0.096031	56.058	56.01	56.106	-0.00056458	369	97	1.4001206	0.057135105	1.3986012	284.81277	0	11.622437						177	5	3	NaN	NaN	NaN	0.83211	1	5636	5636		4.9097	0	1	46492	+		28882	8680	16661	17125	23061	23061					0.08885045050988083
VLTGSGSS	8	Unmodified	_VLTGSGSS_					0	0	0			REV__nc|ENSG00000175866|Q9UQB8-4|BAIAP2	REV__nc|ENSG00000175866|Q9UQB8-4|BAIAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3570102005001	1	707.35701	706.349734	1.7955	0.00127	4.7226	0.0033405	6.518	0.0046106	707.3605283459748	26.288	0.26546	26.288	26.215	26.481	0	627	85	1.24593	0.05045402	1.24593	254.38863	0	10.301468						476	12	4	NaN	NaN	NaN	0.84876	1	3334	3334		0.39566	0	1	93041	+		28883	13177	16662	17126	23062	23062					-0.015187143617481524
VLTPDSLL	8	Unmodified	_VLTPDSLL_					0	0	0			REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	857.4978607783002	1	857.497861	856.490584	2.2576	0.0019359	0.96929	0.00083116	3.2269	0.0027671	857.4998036408625	30.004	0.072445	30.004	30.004	30.077	0	369	40	1.4001206	0.02320242	1.4001206	284.91568	0	4.7215576						47	4	2	NaN	NaN	NaN	0.54545	1	5495	5495		28.667	0	1	3203.3	+		28884	13232	16663	17127	23063	23063					0.05659864291669692
VLTPDSLL	8	Unmodified						0	0	0			REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	857.497861	856.490584	2.2576	0.0019359	0.96929	0.00083116	3.2269	0.0027671	857.4998036408625	30.004	0.072445	30.004	30.004	30.077	0	369	40	1.4001206	0.02320242	1.4001206	284.91568		4.7215576	0.0036629	0.0014083	-0.00013259	NaN	28.667	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3203.3	+		28885	13232	16663	17127							0.05659864291669692
VLTPDSLL	8	Unmodified						0	0	0			REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	857.497861	856.490584	1.6675	0.0014299	-1.3538	-0.0011609	0.31372	0.00026901	857.4965478509394	30.004	0.072393	29.997	29.973	30.045	-0.0064106	366	34	1.4019053	0.01963079	1.4003859	285.27887		3.9947205	-0.0036629	-0.00058376	0.00013259	NaN	28.667	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3167	+		28886	13232	16663	17127							0.05659864291669692
VLTSLLLL	8	Unmodified	_VLTSLLLL_					0	0	0			REV__ENSG00000104901|ENST00000221498|DKKL1	REV__ENSG00000104901|ENST00000221498|DKKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	871.5862818551003	1	871.586282	870.579005	0.83828	0.00073064	0.33707	0.00029379	1.1754	0.0010244	871.5862833573359	35.023	0.096508	35.023	34.999	35.096	0	303	49	1.4393384	0.028485656	1.4393384	292.82135	0	5.795166						120	5	3	NaN	NaN	NaN	0.27293	1	5671	5671		44.247	0	1	13505	+		28887	8942	16664	17128	23064	23064					0.13853904602160583
VLTSLLLL	8	Unmodified	_VLTSLLLL_					0	0	0			REV__ENSG00000104901|ENST00000221498|DKKL1	REV__ENSG00000104901|ENST00000221498|DKKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	871.5862818551003	1	871.586282	870.579005	0.9024	0.00078652	1.2609	0.001099	2.1633	0.0018855	871.5866611253408	35.022	0.12068	35.022	34.974	35.094	-4.5776E-05	297	49	1.4428991	0.028482556	1.4413797	293.54575	0	5.7945557						111	6	2	NaN	NaN	NaN	0.27293	1	5533	5533		44.247	0	1	13614	+		28888	8942	16664	17128	23065	23065					0.13853904602160583
VLTSLLLL	8	Unmodified						0	0	0			REV__ENSG00000104901|ENST00000221498|DKKL1	REV__ENSG00000104901|ENST00000221498|DKKL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	871.586282	870.579005	0.83828	0.00073064	0.33707	0.00029379	1.1754	0.0010244	871.5862833573359	35.023	0.096508	35.023	34.999	35.096	0	303	49	1.4393384	0.028485656	1.4393384	292.82135		5.795166	0.00073672	-0.00040822	-0.0010206	NaN	44.247	120	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13505	+		28889	8942	16664	17128							0.13853904602160583
VLTSLLLL	8	Unmodified						0	0	0			REV__ENSG00000104901|ENST00000221498|DKKL1	REV__ENSG00000104901|ENST00000221498|DKKL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	871.586282	870.579005	0.9024	0.00078652	1.2609	0.001099	2.1633	0.0018855	871.5866611253408	35.022	0.12068	35.022	34.974	35.094	-4.5776E-05	297	49	1.4428991	0.028482556	1.4413797	293.54575		5.7945557	-0.00073672	0.000397	0.0010206	NaN	44.247	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13614	+		28890	8942	16664	17128							0.13853904602160583
VLTVVFFL	8	Unmodified	_VLTVVFFL_					0	0	0			REV__ENSG00000139133|ENST00000266483|ALG10	REV__ENSG00000139133|ENST00000266483|ALG10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.2914968177001	2	469.291497	936.568441	1.2803	0.00060085	8.2548	0.0038739	9.5351	0.0044748	469.29555189254165	56.061	0.07206	56.061	56.037	56.109	0	1191	40	0.90387505	0.023894131	0.90387505	367.3626	0	9.711304						92	4	3	NaN	NaN	NaN	0.84876	1	6760	6760		0.39566	0	1	19754	+		28891	9751	16665	17129	23066	23066					0.09761921947722385
VLVALGAVI	9	Unmodified	_VLVALGAVI_					0	0	0			REV__ENST00000470363.5_1_6:31237527-31238194:-|nuORF	REV__ENST00000470363.5_1_6:31237527-31238194:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.5709661418999	1	854.570966	853.56369	0.95087	0.00081258	-1.1315	-0.00096693	-0.18062	-0.00015435	854.5711235885377	32.924	0.072395	32.921	32.897	32.969	-0.0024757	342	67	1.4161754	0.039230227	1.4146559	288.19833	0	7.983551						128	4	3	NaN	NaN	NaN	0.10053	1	5306	5306		35.745	0	1	11996	+		28892	11242	16666	17130	23067	23067					0.13105037804928088
VLVALGAVI	9	Unmodified						0	0	0			REV__ENST00000470363.5_1_6:31237527-31238194:-|nuORF	REV__ENST00000470363.5_1_6:31237527-31238194:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	854.570966	853.56369	0.95087	0.00081258	-1.1315	-0.00096693	-0.18062	-0.00015435	854.5711235885377	32.924	0.072395	32.921	32.897	32.969	-0.0024757	342	67	1.4161754	0.039230227	1.4146559	288.19833		7.983551	-0.0017764	-0.00030239	-0.00075972	NaN	35.745	128	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11996	+		28893	11242	16666	17130							0.13105037804928088
VLVDHGGA	8	Unmodified	_VLVDHGGA_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4046290951001	1	767.404629	766.397353	2.9265	0.0022458	-5.3251	-0.0040865	-2.3986	-0.0018407	767.3995728397441	25.901	0.048281	25.89	25.865	25.914	-0.0116	537	43	1.2998781	0.025140882	1.2983587	265.00775	0	5.125519						52	3	2	NaN	NaN	NaN	0.8439	1	4234	4234		3.1533	0	1	3644.5	+		28894	11221	16667	17131	23068	23068					0.004809846290982023
VLVHLDLELI	10	Unmodified	_VLVHLDLELI_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.57266327036666	3	388.572663	1162.69616	0.53315	0.00020717	-0.69038	-0.00026826	-0.15723	-6.1094E-05	388.57218241030375	39.068	0.12068	39.068	39.068	39.189	0	1434	94	0.75435036	0.057436407	0.75435036	458.58655	0	34.91687						310	6	4	NaN	NaN	NaN	0.77318	1	15246	15246		0.81135	0	1	32849			28895	2405	16668	17132	23069	23069					0.12132017751082458
VLVKGLLG	8	Unmodified	_VLVKGLLG_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.5447513914003	1	798.544751	797.537475	1.0835	0.00086525	2.4895	0.001988	3.5731	0.0028532	798.5460249982889	31.332	0.048252	31.332	31.308	31.356	0	396	40	1.3840506	0.02322483	1.3840506	281.9742	0	4.731598						54	3	2	NaN	NaN	NaN	0.84945	1	4728	4728		0	0	1	4861.7	+		28896	9255	16669	17133	23070	23070					0.1306076863348835
VLVKGLLG	8	Unmodified						0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.544751	797.537475	1.0835	0.00086525	2.4895	0.001988	3.5731	0.0028532	798.5460249982889	31.332	0.048252	31.332	31.308	31.356	0	396	40	1.3840506	0.02322483	1.3840506	281.9742		4.731598	0.0030353	-0.00049089	-0.0010265	NaN	0	54	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4861.7	+		28897	9255	16669	17133							0.1306076863348835
VLVKGLLG	8	Unmodified						0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	798.544751	797.537475	1.4675	0.0011718	3.6145	0.0028863	5.082	0.0040582	798.5475101061168	31.331	0.072372	31.326	31.302	31.374	-0.0050716	390	46	1.3876231	0.02679491	1.3861036	282.70203		5.4589844	-0.0030353	0.00040746	0.0010265	NaN	0	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5472.7	+		28898	9255	16669	17133							0.1306076863348835
VLVLGGII	8	Unmodified	_VLVLGGII_					0	0	0		tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	783.5338523541001	1	783.533852	782.526576	0.79987	0.00062673	-0.34166	-0.0002677	0.45821	0.00035903	783.533291385445	33.527	0.1207	33.525	33.501	33.621	-0.0018501	474	58	1.3375392	0.034038067	1.3360198	272.58685	0	6.936859						129	6	2	NaN	NaN	NaN	0.71635	1	4450	4450		18.034	0	1	17326			28899	13929	16670	17134	23071	23071					0.12661366259180795
VLVLLPLP	8	Unmodified	_VLVLLPLP_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.5964526109	1	863.596453	862.589176	1.9246	0.0016621	-3.5438	-0.0030604	-1.6192	-0.0013983	863.5932680672864	58.005	0.072098	58.005	57.981	58.053	0	330	70	1.4233059	0.04100263	1.4233059	289.6014	0	8.342834						138	4	3	NaN	NaN	NaN	0.84945	1	5568	5568		0	0	1	25677			28900	924	16671	17135	23072	23072					0.15238512327357512
VLVLLPLP	8	Unmodified	_VLVLLPLP_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.5964526109	1	863.596453	862.589176	-0.48855	-0.00042191	-0.10378	-8.9628E-05	-0.59233	-0.00051154	863.5964067531175	58.003	0.071972	58.002	57.978	58.05	-0.00051117	327	61	1.425088	0.035641074	1.4235686	289.964	0	7.251953						129	4	3	NaN	NaN	NaN	0.84945	1	5434	5434		0	0	1	25603			28901	924	16671	17135	23073	23073					0.15238512327357512
VLVVPIKL	8	Unmodified	_VLVVPIKL_					0	0	0		ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.6230017124	1	880.623002	879.615725	1.7687	0.0015576	-3.2677	-0.0028776	-1.499	-0.00132	880.6200901101948	58.413	0.12005	58.413	58.317	58.437	0	294	43	1.4446791	0.02491963	1.4446791	293.86093	0	5.068878						129	6	2	NaN	NaN	NaN	0.84945	1	5799	5799		0	0	1	10943			28902	6177	16672	17136	23074	23074					0.1711020121869069
VLVVPIKL	8	Unmodified	_VLVVPIKL_					0	0	0		ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.6230017124	1	880.623002	879.615725	2.0493	0.0018047	-3.3745	-0.0029717	-1.3252	-0.001167	880.6199817553617	58.005	0.12011	58.005	57.957	58.077	0	291	169	1.446459	0.09983778	1.446459	294.223	0	20.307922						333	6	4	NaN	NaN	NaN	0.84945	1	5800	5800		0	0	1	130590			28903	6177	16672	17136	23075	23075					0.1711020121869069
VLWTVFRNP	9	Unmodified	_VLWTVFRNP_					0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF;CA12|p.E248Pfs*41|1|0.14|ENSG00000074410|chr15:63340294-63340295|-/TGGGAAATTTGCACGGGGT|frameshift_variant;nc|ENSG00000074410|O43570-2|CA12;ENSG00000074410|ENST00000178638|CA12	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.3191085517001	2	566.319109	1130.62366	1.5598	0.00088333	-0.99049	-0.00056093	0.56929	0.0003224	566.3187121528172	27.181	0.14474	27.181	27.133	27.277	0	1260	43	0.8615505	0.025794804	0.8615505	349.29025	0	10.457733						161	7	4	NaN	NaN	NaN	0.37272	1	14114	14114		16.584	3.5813	1	18892			28904	73	16673	17137	23076	23076					0.06357728468174173
VLWTVFRNP	9	Unmodified						0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF;CA12|p.E248Pfs*41|1|0.14|ENSG00000074410|chr15:63340294-63340295|-/TGGGAAATTTGCACGGGGT|frameshift_variant;nc|ENSG00000074410|O43570-2|CA12;ENSG00000074410|ENST00000178638|CA12	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	566.319109	1130.62366	0.99755	0.00056493	-1.3656	-0.00077336	-0.36803	-0.00020842	566.3183566094735	27.228	0.12065	27.218	27.17	27.291	-0.010124	1260	43	0.8615505	0.025794804	0.8600311	349.29025		10.457733	0.018686	-0.00029135	-0.00075972	NaN	16.584	145	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16924			28905	73	16673	17137							0.06357728468174173
VLYWINVVFI	10	Unmodified	_VLYWINVVFI_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3682670822501	2	633.368267	1264.72198	0.85509	0.00054159	-0.50745	-0.00032141	0.34764	0.00022018	633.3672226828754	40.056	0.2164	40.056	39.983	40.2	0	1254	49	0.8652351	0.029463828	0.8652351	350.33563	0	11.929932						168	10	2	NaN	NaN	NaN	0.77884	1	18110	18110		0.79988	0	1	17246			28906	4676	16674	17138	23077	23077					0.10020911993365189
VLYWINVVFI	10	Unmodified						0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.368267	1264.72198	1.1981	0.00075887	-1.3558	-0.00085874	-0.15769	-9.9876E-05	633.3669250439233	40.03	0.12038	40.036	39.963	40.084	0.0060501	1251	46	0.8670771	0.027623832	0.8655577	351.08145		11.184937	-0.0099568	-0.00043716	0.00016127	NaN	0.79988	130	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13347			28907	4676	16674	17138							0.10020911993365189
VMAIAGNK	8	Unmodified	_VMAIAGNK_					0	0	0		ENST00000580361.1_1_18:9814067-9815220:+|nuORF;ENST00000578737.5_1_18:9792160-9816141:+|nuORF;ENSG00000168461|ENST00000578921|RAB31	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.4443854198001	1	803.444385	802.437109	1.3686	0.0010996	-0.3299	-0.00026506	1.0387	0.0008345	803.443606715635	33.094	0.16891	33.094	33.045	33.214	0	465	73	1.3429124	0.04298854	1.3429124	273.56485	0	8.757172						302	8	3	NaN	NaN	NaN	0.69631	1	4779	4779		19.285	5.5477	1	38366			28908	4621	16675	17139	23078	23078					0.027987883081664222
VMAIAGNK	8	Unmodified	_VMAIAGNK_					0	0	0		ENST00000580361.1_1_18:9814067-9815220:+|nuORF;ENST00000578737.5_1_18:9792160-9816141:+|nuORF;ENSG00000168461|ENST00000578921|RAB31	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.4443854198001	1	803.444385	802.437109	1.1463	0.00092095	0.06239	5.0127E-05	1.2086	0.00097108	803.444268971365	33.092	0.14473	33.09	33.066	33.21	-0.0024757	465	70	1.3429124	0.041190743	1.341393	273.56485	0	8.390961						272	7	3	NaN	NaN	NaN	0.69631	1	4688	4688		19.285	4.2718	1	33871			28909	4621	16675	17139	23079	23079					0.027987883081664222
VMANSKKLK	9	Unmodified	_VMANSKKLK_					0	0	0		ENST00000314607.10_1_1:35827370-35835672:+|nuORF	ENST00000314607.10_1_1:35827370-35835672:+|nuORF	ENST00000314607.10_1_1:35827370-35835672:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.80751941015	2	509.807519	1017.60049	1.9946	0.0010168	-8.9262	-0.0045506	-6.9316	-0.0035338	509.8027894486551	29.811	0.31377	29.811	29.811	30.125	0	1227	127	0.88180584	0.0772841	0.88180584	357.9801	0	31.37442						450	14	2	NaN	NaN	NaN	0.66529	1	9288	9288		2.1763	0	1	43050			28910	6465	16676	17140	23080	23080					0.09238966359203005
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.3124376125501	2	507.312438	1012.61032	1.6131	0.00081834	-2.1149	-0.0010729	-0.50179	-0.00025456	507.3114841344821	24.454	0.19291	24.454	24.406	24.598	0	1269	70	0.8560222	0.04238403	0.8560222	347.53577	0	17.207458						313	9	5	NaN	NaN	NaN	0.03533	1	9098	9098		53.14	28.578	1	112040			28911	5943	16677	17141	23081	23081					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.3124376125501	2	507.312438	1012.61032	1.268	0.00064329	-1.2246	-0.00062123	0.043489	2.2062E-05	507.31197999485295	24.502	0.21715	24.489	24.417	24.634	-0.012747	1269	67	0.8560222	0.040539026	0.85450274	347.53574	0	16.458405						306	10	5	NaN	NaN	NaN	0.097143	1	8920	8920		36.235	5.6247	1	102390			28912	5943	16677	17141	23082	23082					0.10452154364600119
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.30461258045005	2	500.304613	998.594672	2.2724	0.0011369	-4.3728	-0.0021877	-2.1004	-0.0010508	500.3040539668739	23.176	0.16879	23.176	23.128	23.296	0	1284	82	0.8468043	0.049792826	0.8468043	343.8581	0	20.219147						266	8	3	NaN	NaN	NaN	0.041983	1	8539	8539		50.315	15.876	1	122440			28913	6047	16678	17142	23083	23083					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.30461258045005	2	500.304613	998.594672	1.7419	0.00087147	-4.7357	-0.0023693	-2.9939	-0.0014978	500.30344657473705	23.223	0.16888	23.21	23.162	23.331	-0.013294	1284	67	0.8468043	0.040578544	0.8452849	343.8581	0	16.47754						348	8	5	NaN	NaN	NaN	0.030696	1	8357	8357		58.2	27.589	1	137200			28914	6047	16678	17142	23084	23084					0.09531867847545072
VMDVAFVQF	9	Unmodified	_VMDVAFVQF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1055.5230296713	1	1055.52303	1054.51575	1.7549	0.0018524	-5.7101	-0.0060272	-3.9552	-0.0041748	1055.514677349646	32.321	0.096539	32.321	32.321	32.418	0	114	79	1.5511382	0.045995355	1.5511382	314.70874	0	9.33197						226	5	4	NaN	NaN	NaN	0.089764	1	10831	10831		37.302	13.452	1	32873			28915	1423	16679	17143	23085	23085					-0.009324041774107172
VMDVAFVQF	9	Unmodified	_VMDVAFVQF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.2651530689501	2	528.265153	1054.51575	0.67287	0.00035546	-2.596	-0.0013714	-1.9231	-0.0010159	528.2640083875397	32.32	0.12066	32.316	32.292	32.413	-0.0037613	1284	43	0.8468043	0.025817096	0.8452849	343.61017	0	10.475861						91	6	2	NaN	NaN	NaN	0.39244	1	10605	10605		14.042	2.8713	1	9433.7			28916	1423	16679	17143	23086	23086					-0.009324041774107172
VMDVAFVQF	9	Unmodified						0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.265153	1054.51575	1.2051	0.00063662	-1.5027	-0.00079384	-0.29761	-0.00015722	528.2635465208949	32.345	0.12069	32.345	32.297	32.418	0	1290	49	0.84311575	0.02951163	0.84311575	342.11343		11.975037	0.014504	0.00077316	-0.0010846	NaN	14.042	105	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9380.3			28917	1423	16679	17143							-0.009324041774107172
VMDVAFVQF	9	Unmodified						0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1055.52303	1054.51575	1.0644	0.0011235	-6.1365	-0.0064772	-5.072	-0.0053536	1055.5153813476395	32.32	0.096542	32.316	32.292	32.389	-0.0037613	117	91	1.5493695	0.05307722	1.54785	314.34988		10.768768	-0.0024224	-0.00022758	-0.0016441	NaN	37.302	150	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29936			28918	1423	16679	17143							-0.009324041774107172
VMEALEPLCL	10	Unmodified	_VMEALEPLCL_					0	0	0			REV__ENSG00000081320|ENST00000263955|STK17B	REV__ENSG00000081320|ENST00000263955|STK17B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1117.5631799264997	1	1117.56318	1116.5559	0.71645	0.00080068	0.29083	0.00032502	1.0073	0.0011257	1117.563964038285	33.647	0.21719	33.645	33.597	33.814	-0.0018463	66	52	1.579413	0.030021429	1.5778936	320.21533	0	6.0866394						178	10	2	NaN	NaN	NaN	0.53991	1	13137	13137		17.799	3.7574	1	16681	+		28919	8661	16680	17144	23087	23087					0.0022877443082052196
VMFALKQP	8	Unmodified	_VMFALKQP_					0	0	0			REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	467.2649561037	2	467.264956	932.515359	1.3781	0.00064396	-9.1789	-0.004289	-7.8007	-0.003645	467.2601512795713	16.179	0.14387	16.166	16.07	16.214	-0.012993	1455	31	0.7413668	0.018555045	0.73984736	301.33328	0	7.541809						95	7	2	NaN	NaN	NaN	0.80071	1	6527	6527		9.1232	0	1	6499.7	+		28920	9613	16681	17145	23088	23088					0.04640220893395508
VMFALKQP	8	Unmodified						0	0	0			REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	REV__ENST00000527753.5_1_11:45959861-45986961:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	467.264956	932.515359	1.3781	0.00064396	-9.1789	-0.004289	-7.8007	-0.003645	467.2601512795713	16.179	0.14387	16.166	16.07	16.214	-0.012993	1455	31	0.7413668	0.018555045	0.73984736	301.33328		7.541809	0.11206	0.00030102	0.00016808	NaN	9.1232	95	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6499.7	+		28921	9613	16681	17145							0.04640220893395508
VMGAAGAG	8	Unmodified	_VMGAAGAG_					0	0	0		ENSG00000128313|ENST00000249044|APOL5	ENSG00000128313|ENST00000249044|APOL5	ENSG00000128313|ENST00000249044|APOL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.15487433805004	2	317.154874	632.295196	1.2074	0.00038294	-0.71926	-0.00022812	0.48816	0.00015482	317.1548351616808	41.113	0.2643	41.113	40.873	41.137	0	1533	121	0.6930556	0.07438141	0.6930556	283.6304	0	30.440308						493	12	2	NaN	NaN	NaN	0.84876	1	1522	1522		0.39566	0	1	68774			28922	2564	16682	17146	23089	23089					-0.035660047141618634
VMGIGGFN	8	Unmodified	_VMGIGGFN_					0	0	0			REV__ENSG00000142606|ENST00000378412|MMEL1	REV__ENSG00000142606|ENST00000378412|MMEL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	794.3865361899001	1	794.386536	793.37926	2.3098	0.0018348	-5.5528	-0.004411	-3.243	-0.0025762	794.3818307468888	26.529	0.3138	26.529	26.456	26.77	0	528	148	1.3052634	0.0879792	1.3052634	265.94644	0	17.92569						804	14	4	NaN	NaN	NaN	0.46176	1	4667	4667		33.137	7.3852	1	212100	+		28923	9844	16683	17147	23090	23090					-0.025694736172681587
VMGLCGLL	8	Unmodified	_VMGLCGLL_					0	0	0			REV__ENSG00000101850|ENST00000467482|GPR143	REV__ENSG00000101850|ENST00000467482|GPR143	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.21916000405	2	403.21916	804.423767	2.2178	0.00089427	1.0789	0.00043503	3.2967	0.0013293	403.21978948219186	53.674	0.63409	53.674	53.602	54.236	0	1437	163	0.7524962	0.1000669	0.7524962	306.563	0	40.766724						1788	26	4	NaN	NaN	NaN	0.83849	1	4798	4798		4.0537	1.2685	1	3873000	+		28924	8867	16684	17148	23091	23091					0.013732142045682849
VMGLCGLL	8	Unmodified						0	0	0			REV__ENSG00000101850|ENST00000467482|GPR143	REV__ENSG00000101850|ENST00000467482|GPR143	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	403.21916	804.423767	2.2178	0.00089427	1.0789	0.00043503	3.2967	0.0013293	403.21978948219186	53.674	0.63409	53.674	53.602	54.236	0	1437	163	0.7524962	0.1000669	0.7524962	306.563		40.766724	-0.019158	-0.00045438	0.00075972	NaN	4.0537	1788	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3873000	+		28925	8867	16684	17148							0.013732142045682849
VMGLCGLL	8	Unmodified						0	0	0			REV__ENSG00000101850|ENST00000467482|GPR143	REV__ENSG00000101850|ENST00000467482|GPR143	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	403.21916	804.423767	0.68861	0.00027766	2.5888	0.0010439	3.2774	0.0013215	403.22052719173035	53.713	0.5859	53.712	53.623	54.209	-0.00059128	1437	154	0.7524962	0.09449226	0.75097674	306.56296		38.495636	0.019158	0.0007633	-0.00075972	NaN	4.0537	1800	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3238100	+		28926	8867	16684	17148							0.013732142045682849
VMGWVFKYAW	10	Unmodified	_VMGWVFKYAW_					0	0	0		tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	429.5512051384334	3	429.551205	1285.63179	1.2463	0.00053533	-4.056	-0.0017423	-2.8098	-0.0012069	429.5492712233089	19.058	0.24025	19.044	18.924	19.164	-0.014059	1476	46	0.72837335	0.027858198	0.7268539	442.2986	0	16.916656						141	11	3	NaN	NaN	NaN	0.60059	1	17703	17703		14.854	6.5002	1	13304			28927	13979	16685	17149	23092	23092					0.0003953939331040601
VMGWVFKYAW	10	Unmodified						0	0	0		tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	429.551205	1285.63179	1.7402	0.00074749	-5.0168	-0.002155	-3.2766	-0.0014075	429.5489688784905	18.82	0.14401	18.82	18.772	18.916	0	1479	37	0.72651637	0.022285342	0.72651637	441.171		13.532593	-0.11177	-0.00082386	-0.00016879	NaN	14.854	159	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16515			28928	13979	16685	17149							0.0003953939331040601
VMIIKNLK	8	Unmodified	_VMIIKNLK_					0	0	0		ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567092.1_1_16:58149929-58163019:-|nuORF	ENST00000567092.1_1_16:58149929-58163019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.6117850991	1	958.611785	957.604509	1.5183	0.0014555	-1.6482	-0.00158	-0.12986	-0.00012449	958.6108455798989	53.65	0.15372	53.65	53.626	53.779	0	696	43	1.2044523	0.02527833	1.2044523	244.68915	0	5.135391						102	6	2	NaN	NaN	NaN	0.84945	1	7285	7285		0	0	1	14680			28929	768	16686	17150	23093	23093					0.1240105585289939
VMIKYGMII	9	Unmodified	_VMIKYGMII_					0	0	0			REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.3032239844501	2	534.303224	1066.5919	1.0863	0.00058041	-9.3121	-0.0049755	-8.2258	-0.0043951	534.2980810219128	28.507	0.048241	28.499	28.499	28.547	-0.0083485	1248	28	0.8689189	0.0165779	0.86739945	352.53223	0	6.7258606						44	3	2	NaN	NaN	NaN	0.47587	1	11154	11154		10.605	1.643	1	5501.2	+		28930	13340	16687	17151	23094	23094					0.06126276398367736
VMIKYGMII	9	Unmodified						0	0	0			REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.303224	1066.5919	1.9269	0.0010295	-12.556	-0.0067086	-10.629	-0.0056791	534.2966307291636	28.508	0.048271	28.508	28.484	28.532	0	1251	34	0.8670771	0.020261824	0.8670771	351.785		8.22052	0.0045259	-0.0019996	-0.00016117	NaN	10.605	51	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7411.4	+		28931	13340	16687	17151							0.06126276398367736
VMIKYGMII	9	Unmodified						0	0	0			REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	REV__STAT3|p.D661V|1|0.22|ENSG00000168610|chr17:42322401-42322401|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.303224	1066.5919	1.0863	0.00058041	-9.3121	-0.0049755	-8.2258	-0.0043951	534.2980810219128	28.507	0.048241	28.499	28.499	28.547	-0.0083485	1248	28	0.8689189	0.0165779	0.86739945	352.53223		6.7258606	-0.0045259	0.0014666	0.00016117	NaN	10.605	44	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5501.2	+		28932	13340	16687	17151							0.06126276398367736
VMLAVLCSPF	10	Unmodified	_VMLAVLCSPF_					0	0	0		tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.2850312313001	2	540.285031	1078.55551	1.143	0.00061753	-1.3834	-0.00074746	-0.24047	-0.00012992	540.2849099489941	31.887	0.14482	31.887	31.863	32.008	0	1254	103	0.8652351	0.0626784	0.8652351	350.98798	0	25.425873						222	7	3	NaN	NaN	NaN	0.71736	1	11918	11918		6.8632	0.613	1	22413			28933	13743	16688	17152	23095	23095					0.019373995016621848
VMLAVLCSPF	10	Unmodified						0	0	0		tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	tr|U7SJ49|U7SJ49_FUSNUPhosphonatetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02090PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.285031	1078.55551	0.56154	0.00030339	-0.70404	-0.00038038	-0.1425	-7.6988E-05	540.2849357519874	31.886	0.14477	31.881	31.833	31.978	-0.0044155	1257	94	0.86339295	0.05715102	0.8618735	350.2407		23.183655	-0.0027299	0.00045216	-0.0016808	NaN	6.8632	179	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19901			28934	13743	16688	17152							0.019373995016621848
VMLETFQNL	9	Unmodified	_VMLETFQNL_					0	0	0		nc|ENSG00000186300|Q8NEP9-2|ZNF555;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7811672739001	2	547.781167	1093.54778	1.4641	0.00080198	1.6556	0.00090692	3.1197	0.0017089	548.2858381377366	30.27	0.19306	30.27	30.125	30.318	0	1221	55	0.885486	0.033128858	0.885486	359.14075	0	13.436615						168	9	2	NaN	NaN	NaN	0.44082	1	12556	12556		12.049	1.4437	1	15039			28935	5461	16689	17153	23096	23096					0.004749635057351043
VMLGTQLLYKF	11	Unmodified	_VMLGTQLLYKF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.8703166322	2	656.870317	1311.72608	1.2799	0.00084071	-2.0453	-0.0013435	-0.76545	-0.0005028	656.8692173091293	29.57	0.12067	29.57	29.546	29.667	0	1086	64	0.9680805	0.038452744	0.9680805	391.82623	0	15.563568						243	6	4	NaN	NaN	NaN	0.00427	1	18982	18982		74.865	53.014	1	46773			28936	5436	16690	17154	23097	23097					0.08268633424768268
VMLGTQLLYKF	11	Unmodified	_VMLGTQLLYKF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.8703166322	2	656.870317	1311.72608	0.90757	0.00059616	-2.4347	-0.0015993	-1.5272	-0.0010031	656.8686159519413	29.593	0.16891	29.586	29.562	29.731	-0.0070667	1086	64	0.9680805	0.0384444	0.9665611	391.82623	0	15.560211						258	8	4	NaN	NaN	NaN	0.032697	1	18144	18144		54.991	40.137	1	44479			28937	5436	16690	17154	23098	23098					0.08268633424768268
VMLGTQLLYKF	11	Oxidation (M)	_VM(Oxidation (M))LGTQLLYKF_		VM(1)LGTQLLYKF		VM(110)LGTQLLYKF	0	0	1		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.86777394325	2	664.867774	1327.72099	1.869	0.0012426	-3.5001	-0.0023271	-1.6311	-0.0010845	664.8653205821412	27.929	0.1689	27.929	27.905	28.074	0	1086	52	0.9680805	0.031125009	0.9680805	391.77704	0	12.59613						267	8	4	NaN	NaN	NaN	3.3034E-11	1	19229	19229		106.32	74.641	1	55307			28938	5436	16690	17155	23099	23099		564			0.070243295621367
VMLGTQLLYKF	11	Oxidation (M)	_VM(Oxidation (M))LGTQLLYKF_		VM(1)LGTQLLYKF		VM(86)LGTQLLYKF	0	0	1		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.86777394325	2	664.867774	1327.72099	1.5089	0.0010032	-3.5049	-0.0023303	-1.996	-0.0013271	664.865438673948	28.001	0.1448	27.992	27.919	28.064	-0.0089798	1086	52	0.9680805	0.031125009	0.9665611	391.77704	0	12.59613						326	7	5	NaN	NaN	NaN	0.00012321	1	18368	18368		85.824	67.855	1	59802			28939	5436	16690	17155	23100	23100		564			0.070243295621367
VMLTLPVHS	9	Unmodified	_VMLTLPVHS_					0	0	0		ENST00000396328.5_1_15:53908265-53908352:-|nuORF	ENST00000396328.5_1_15:53908265-53908352:-|nuORF	ENST00000396328.5_1_15:53908265-53908352:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5546641507001	1	996.554664	995.547388	1.479	0.0014739	-9.8027	-0.0097689	-8.3236	-0.008295	996.5451383189495	34.564	0.14469	34.563	34.515	34.66	-0.00064468	183	52	1.510409	0.030139327	1.5088896	306.67957	0	6.119629						124	7	2	NaN	NaN	NaN	0.36492	1	8253	8253		15.175	1.1338	1	12134			28940	6793	16691	17156	23101	23101					0.04943588576543334
VMNEPGERSR	10	Unmodified	_VMNEPGERSR_					0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7853039116001	2	587.785304	1173.55605	2.1605	0.0012699	-4.6084	-0.0027088	-2.4479	-0.0014389	587.7813760925318	18.844	0.072058	18.844	18.772	18.844	0	1218	49	0.8873258	0.029431999	0.8873258	359.5815	0	11.927063						63	4	2	NaN	NaN	NaN	0.74854	1	15597	15597		4.7291	0	1	6023.1	+		28941	10559	16692	17157	23102	23102					-0.02378089524927418
VMPSSFFLL	9	Unmodified	_VMPSSFFLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5485161403	1	1040.54852	1039.54124	2.0111	0.0020927	-0.79237	-0.0008245	1.2188	0.0012682	1040.5481082073236	36.591	0.43339	36.591	36.495	36.928	0	153	166	1.5281296	0.097385764	1.5281296	310.09818	0	19.762177						1886	19	5	NaN	NaN	NaN	0.023074	1	10201	10201		68.108	21.068	1	662260			28942	3400	16693	17158	23103	23103					0.023050703450280707
VMPSSFFLL	9	Unmodified	_VMPSSFFLL_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5485161403	1	1040.54852	1039.54124	2.0459	0.0021289	-0.80216	-0.00083469	1.2438	0.0012942	1040.5481978385703	36.589	0.40922	36.591	36.494	36.904	0.0016747	150	187	1.5299006	0.10982108	1.5283811	310.45758	0	22.285645						1834	18	5	NaN	NaN	NaN	0.02781	1	9984	9984		61.977	14.937	1	637720			28943	3400	16693	17158	23104	23104					0.023050703450280707
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(65)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1056.5434307624	1	1056.54343	1055.53615	2.4819	0.0026222	1.4681	0.0015511	3.95	0.0041733	1056.5459194706311	34.686	0.26535	34.686	34.614	34.879	0	141	136	1.5352125	0.079603314	1.5352125	311.47366	0	16.150421						1106	12	4	NaN	NaN	NaN	0.025843	1	10895	10895		64.55	25.632	1	662070			28944	3400	16693	17159	23105	23105		380			0.010607664823965024
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(78)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1056.5434307624	1	1056.54343	1055.53615	2.1852	0.0023088	1.2024	0.0012703	3.3876	0.0035791	1056.5453728523185	34.685	0.24102	34.684	34.587	34.828	-0.0006485	138	151	1.5369828	0.08846223	1.5354633	311.83282	0	17.947754						1237	11	4	NaN	NaN	NaN	0.014943	1	10668	10668		78.398	25.64	1	697550			28945	3400	16693	17159	23106	23106		380			0.010607664823965024
VMPSSFFLL	9	Oxidation (M)						0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1056.54343	1055.53615	1.9571	0.0020678	-3.6507	-0.0038571	-1.6936	-0.0017894	1056.5384796671653	34.66	0.048229	34.66	34.636	34.684	-0.00064468	219	70	1.4891195	0.04085028	1.4876001	302.12204		8.287964	-0.013092	-0.004799	-0.023806	NaN	64.55	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4321.1			28946	3400	16693	17159				380			0.010607664823965024
VMSLVSHTQ	9	Unmodified	_VMSLVSHTQ_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.25785935310006	2	501.257859	1000.50117	0.95986	0.00048114	-4.9901	-0.0025013	-4.0302	-0.0020202	501.2557042866735	22.187	0.12065	22.173	22.149	22.27	-0.013731	1314	61	0.8283535	0.036925495	0.8268341	336.35715	0	14.993774						178	6	3	NaN	NaN	NaN	0.18779	1	8439	8439		26.115	1.5529	1	28346	+		28947	8797	16694	17160	23107	23107					0.0009352367445671916
VMSLVSHTQ	9	Unmodified						0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.257859	1000.50117	1.7615	0.00088298	-5.2139	-0.0026135	-3.4523	-0.0017305	501.2547002185763	22.163	0.072374	22.163	22.163	22.236	0	1311	58	0.83019954	0.03508115	0.83019954	337.10672		14.244873	-0.0049893	-0.00011552	0.0016827	NaN	26.115	152	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27063	+		28948	8797	16694	17160							0.0009352367445671916
VMSLVSHTQ	9	Unmodified						0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	501.257859	1000.50117	0.95986	0.00048114	-4.9901	-0.0025013	-4.0302	-0.0020202	501.2557042866735	22.187	0.12065	22.173	22.149	22.27	-0.013731	1314	61	0.8283535	0.036925495	0.8268341	336.35715		14.993774	0.0049893	0.00010882	-0.0016827	NaN	26.115	178	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28346	+		28949	8797	16694	17160							0.0009352367445671916
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2969845135999	2	548.296985	1094.57942	1.3995	0.00076732	-1.5225	-0.00083481	-0.12309	-6.7489E-05	548.2967138281826	20.694	0.16868	20.694	20.67	20.838	0	1233	67	0.87812483	0.040499628	0.87812483	356.151	0	16.425873						327	8	5	NaN	NaN	NaN	0.0037187	1	12618	12618		80.24	43.01	1	158380			28950	3961	16695	17161	23108	23108					0.035909562596543765
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2969845135999	2	548.296985	1094.57942	1.2917	0.00070825	-0.88976	-0.00048785	0.40197	0.0002204	548.2965812857192	20.718	0.16861	20.704	20.656	20.825	-0.014086	1233	55	0.87812483	0.03313607	0.8766054	356.151	0	13.439362						306	8	5	NaN	NaN	NaN	8.3231E-06	1	12290	12290		119.59	75.286	1	147650			28951	3961	16695	17161	23109	23109					0.035909562596543765
VMSQALKATF	10	Oxidation (M)	_VM(Oxidation (M))SQALKATF_		VM(1)SQALKATF		VM(100)SQALKATF	0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2944418246499	2	556.294442	1110.57433	2.1329	0.0011865	-3.1378	-0.0017456	-1.0049	-0.00055903	556.2931093858571	18.482	0.192	18.468	18.42	18.612	-0.01395	1245	88	0.87076044	0.05341184	0.869241	353.10092	0	21.658966						424	9	4	NaN	NaN	NaN	0.00019823	1	12931	12931		103.01	64.091	1	135690			28952	3961	16695	17162	23110	23110		428			0.02346652397022808
VMSQALKATF	10	Oxidation (M)						0	0	1		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.294442	1110.57433	1.8573	0.0010332	-0.30489	-0.00016961	1.5524	0.00086359	556.2947996449936	18.772	0.095911	18.772	18.7	18.796	0	1227	46	0.88180584	0.027608931	0.88180584	357.5799		11.195648	0.15224	0.0025237	0.0062824	NaN	103.01	100	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6771.5			28953	3961	16695	17162				428			0.02346652397022808
VMSRVFLIW	9	Unmodified	_VMSRVFLIW_					0	0	0		ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.8257121633001	2	575.825712	1149.63687	1.1081	0.00063806	-2.3789	-0.0013698	-1.2709	-0.00073179	575.8241931023579	30.97	0.16897	30.97	30.922	31.091	0	1221	70	0.885486	0.042301655	0.885486	358.92267	0	17.146515						334	8	3	NaN	NaN	NaN	0.31471	1	14804	14804		17.97	0.18937	1	59727			28954	5944	16696	17163	23111	23111					0.06803843255920583
VMSVGFLL	8	Unmodified	_VMSVGFLL_					0	0	0		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4851876020001	1	865.485188	864.477911	0.97036	0.00083984	-0.80911	-0.00070027	0.16125	0.00013956	865.484217335573	33.842	0.096519	33.842	33.793	33.89	0	363	52	1.4036897	0.030335188	1.4036897	285.60028	0	6.1721497						147	5	3	NaN	NaN	NaN	0.19946	1	5590	5590		50.033	17.163	1	16542			28955	1428	16697	17164	23112	23112					0.040251296277801885
VMSVGFLL	8	Unmodified	_VMSVGFLL_					0	0	0		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.4851876020001	1	865.485188	864.477911	0.67791	0.00058672	0.074239	6.4253E-05	0.75215	0.00065097	865.4852583496944	33.84	0.12064	33.839	33.79	33.911	-0.0018463	363	55	1.4036897	0.032114625	1.4021703	285.60028	0	6.5341797						171	6	3	NaN	NaN	NaN	0.46176	1	5453	5453		33.137	13.852	1	18055			28956	1428	16697	17164	23113	23113					0.040251296277801885
VMSVGFLL	8	Oxidation (M)	_VM(Oxidation (M))SVGFLL_		VM(1)SVGFLL		VM(50)SVGFLL	0	0	1		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.4801022241002	1	881.480102	880.472826	1.1775	0.0010379	-0.19118	-0.00016852	0.98627	0.00086938	881.4802097294956	30.872	0.14484	30.866	30.818	30.963	-0.0057545	357	52	1.407258	0.030325532	1.4057386	286.24484	0	6.168396						185	7	3	NaN	NaN	NaN	0.19946	1	5685	5685		50.033	11.425	1	18734			28957	1428	16697	17165	23114	23114		160			0.027808257651713575
VMTNGPVCR	9	Unmodified	_VMTNGPVCR_					0	0	0		ENST00000578114.1_1_18:29202757-29202883:-|nuORF	ENST00000578114.1_1_18:29202757-29202883:-|nuORF	ENST00000578114.1_1_18:29202757-29202883:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4702825943001	1	976.470283	975.463006	1.2023	0.001174	-7.8396	-0.0076551	-6.6373	-0.0064811	976.4635331050524	31.163	0.07242	31.163	31.139	31.211	0	258	37	1.4660252	0.021336913	1.4660252	297.7514	0	4.3335876						61	4	2	NaN	NaN	NaN	0.55027	1	7754	7754		7.5404	2.0745	1	3549.9			28958	7670	16698	17166	23115	23115					-0.025706855118642125
VMTTILIS	8	Unmodified	_VMTTILIS_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.2567967206	2	439.256797	876.499041	1.2161	0.00053419	3.2246	0.0014164	4.4407	0.0019506	439.2578539470025	22.501	0.072247	22.501	22.453	22.525	0	1398	49	0.77658504	0.029620469	0.77658504	315.94064	0	12.050598						124	4	3	NaN	NaN	NaN	0.76633	1	5760	5760		13.737	1.1492	1	14072	+		28959	10086	16699	17167	23116	23116					0.05585094936634505
VMVLELKL	8	Unmodified	_VMVLELKL_					0	0	0			REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1	REV__tr|U7SQT0|U7SQT0_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01677PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5849016466001	1	944.584902	943.577625	1.8866	0.0017821	-2.6142	-0.0024694	-0.72763	-0.00068731	944.5826223632147	41.52	0.096203	41.529	41.481	41.577	0.0082626	900	25	1.0812234	0.014550447	1.0797039	219.70103	0	2.956604						51	5	2	NaN	NaN	NaN	0.84727	1	6780	6780		1.2418	0	1	2772.9	+		28960	13467	16700	17168	23117	23117					0.10357947241720922
VMWRCIPSW	9	Unmodified	_VMWRCIPSW_					0	0	0		ENST00000462856.6_1_6:112080150-112080267:-|nuORF	ENST00000462856.6_1_6:112080150-112080267:-|nuORF	ENST00000462856.6_1_6:112080150-112080267:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.28589689855	2	589.285897	1176.55724	1.6769	0.00098818	-0.40741	-0.00024008	1.2695	0.0007481	589.2860634975796	23.489	0.12068	23.476	23.403	23.524	-0.013294	1194	79	0.902037	0.047780514	0.9005176	365.53226	0	19.36206						290	6	3	NaN	NaN	NaN	0.41766	1	15125	15125		13.003	0.95414	1	47079			28961	7089	16701	17169	23118	23118					-0.023975466897354636
VNAGAGFI	8	Unmodified	_VNAGAGFI_					0	0	0		tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.3988154356999	1	748.398815	747.391539	1.8692	0.0013989	-10.412	-0.0077926	-8.5432	-0.0063937	748.3910286978189	22.887	0.19291	22.887	22.79	22.983	0	567	88	1.2819146	0.052152634	1.2819146	261.46237	0	10.637192						227	9	2	NaN	NaN	NaN	0.81807	1	4002	4002		6.794	0.70367	1	31051			28962	13766	16702	17170	23119	23119					0.007738861174175327
VNAGAGFI	8	Unmodified						0	0	0		tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	tr|U7SLQ4|U7SLQ4_FUSNUButyrate-acetoacetateCoA-transferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01857PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	748.398815	747.391539	1.6313	0.0012209	-10.367	-0.0077588	-8.7358	-0.0065379	748.3910019310766	22.886	0.19284	22.872	22.776	22.969	-0.01354	564	100	1.2837118	0.059352517	1.2821923	261.82892		12.105698	-0.0071618	1.8934E-05	0.00013889	NaN	6.794	228	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29042			28963	13766	16702	17170							0.007738861174175327
VNAGGGGT	8	Unmodified	_VNAGGGGT_					0	0	0		ENST00000426077.2_1_2:120980801-120980846:-|nuORF	ENST00000426077.2_1_2:120980801-120980846:-|nuORF	ENST00000426077.2_1_2:120980801-120980846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.2998296725999	1	632.29983	631.292553	2.1348	0.0013499	-2.8576	-0.0018069	-0.72275	-0.000457	632.3002440202242	26.094	0.072411	26.083	26.083	26.156	-0.011137	1146	52	0.93142134	0.031185508	0.9299019	190.60315	0	6.381714						85	4	2	NaN	NaN	NaN	0.84945	1	1426	1426		0	0	1	8024.4			28964	6944	16703	17171	23120	23120					-0.037841368474914816
VNDDRHVM	8	Unmodified	_VNDDRHVM_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.2296332299	2	493.229633	984.444714	1.2052	0.00059445	-2.6086	-0.0012866	-1.4034	-0.00069219	493.22819984885837	14.548	0.071876	14.537	14.513	14.585	-0.011218	1515	31	0.7042165	0.018595338	0.70269704	286.01392	0	7.5523987						58	4	2	NaN	NaN	NaN	0.82627	1	7849	7849		5.6942	1.2811	1	4519.9			28965	2601	16704	17172	23121	23121					-0.048131041622241355
VNDDRHVM	8	Oxidation (M)	_VNDDRHVM(Oxidation (M))_		VNDDRHVM(1)		VNDDRHVM(40)	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.22709054095003	2	501.227091	1000.43963	1.3591	0.00068124	-1.4379	-0.00072072	-0.07877	-3.9482E-05	501.226087325179	12.366	0.071925	12.357	12.333	12.405	-0.0088415	1530	46	0.6949163	0.027909696	0.69339687	282.1745	0	11.332855						66	4	2	NaN	NaN	NaN	0.33039	1	8423	8423		40.154	24.978	1	5174.6			28966	2601	16704	17173	23122	23122		298			-0.060574080248329665
VNDDRHVM	8	Oxidation (M)						0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.227091	1000.43963	1.3945	0.00069896	-2.7601	-0.0013835	-1.3656	-0.0006845	501.2254368815947	12.364	0.071911	12.364	12.34	12.412	0	1530	43	0.6949163	0.026050448	0.6949163	282.17453		10.577911	0.0035414	-0.00054867	0.00075972	NaN	40.154	67	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4605			28967	2601	16704	17173				298			-0.060574080248329665
VNDLASPV	8	Unmodified	_VNDLASPV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.4305094946001	1	814.430509	813.423233	1.3283	0.0010818	5.3608	0.004366	6.6891	0.0054478	814.4347088702638	29.497	0.16891	29.49	29.442	29.61	-0.0070648	477	55	1.3357477	0.0322448	1.3342283	272.04346	0	6.567108						164	8	3	NaN	NaN	NaN	0.74229	1	4829	4829		16.417	0	1	17075			28968	13681	16705	17174	23123	23123					0.009058340807200693
VNDLASPV	8	Unmodified						0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	814.430509	813.423233	1.7859	0.0014545	4.0175	0.003272	5.8034	0.0047265	814.4342712824001	29.498	0.096569	29.498	29.474	29.57	0	477	58	1.3357477	0.034038067	1.3357477	272.04346		6.932312	0.003948	-0.00055927	0.00075972	NaN	16.417	144	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14733			28969	13681	16705	17174							0.009058340807200693
VNDLPVIL	8	Unmodified	_VNDLPVIL_					0	0	0		ENSG00000178852|ENST00000331493|EFCAB13;EFCAB13|p.N362Ifs*5|1|0.17|ENSG00000178852|chr17:47374674-47374674|A/-|frameshift_variant	ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	882.5294952577	1	882.529495	881.522219	1.8551	0.0016372	0.15853	0.00013991	2.0136	0.0017771	882.5286978598011	31.235	0.36199	31.235	31.163	31.525	0	336	325	1.419741	0.19316137	1.419741	288.77866	0	39.28946						1901	16	5	NaN	NaN	NaN	0.11528	1	5827	5827		61.271	5.7776	1	3018400			28970	5128	16706	17175	23124	23124					0.07671857045602337
VNDLPVIL	8	Unmodified						0	0	0		ENSG00000178852|ENST00000331493|EFCAB13;EFCAB13|p.N362Ifs*5|1|0.17|ENSG00000178852|chr17:47374674-47374674|A/-|frameshift_variant	ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	882.529495	881.522219	2.3079	0.0020368	0.16167	0.00014268	2.4696	0.0021795	882.5289677087605	31.234	0.45851	31.229	31.157	31.615	-0.0050716	336	319	1.419741	0.18954384	1.4182216	288.77866		38.55365	-0.0030577	1.161E-06	-0.00075972	NaN	61.271	2130	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3140400			28971	5128	16706	17175							0.07671857045602337
VNEFTQGLHP	10	Unmodified	_VNEFTQGLHP_					0	0	0		nc|ENSG00000224795|Q6ZSK4|NTM-AS1	nc|ENSG00000224795|Q6ZSK4|NTM-AS1	nc|ENSG00000224795|Q6ZSK4|NTM-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.2854626996001	2	571.285463	1140.55637	1.716	0.00098031	1.6313	0.00093197	3.3473	0.0019123	571.286699646105	23.851	0.14461	23.851	23.827	23.971	0	1230	61	0.8799654	0.03680587	0.8799654	356.7186	0	14.920288						193	7	3	NaN	NaN	NaN	0.70677	1	14463	14463		7.5876	0.047225	1	28290			28972	8039	16707	17176	23125	23125					-0.008283465334216089
VNEFTQGLHP	10	Unmodified						0	0	0		nc|ENSG00000224795|Q6ZSK4|NTM-AS1	nc|ENSG00000224795|Q6ZSK4|NTM-AS1	nc|ENSG00000224795|Q6ZSK4|NTM-AS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	571.285463	1140.55637	1.3105	0.00074869	1.5455	0.00088294	2.8561	0.0016316	571.2866069146523	23.875	0.16877	23.861	23.789	23.958	-0.013048	1233	76	0.87812483	0.04598999	0.8766054	355.97244		18.64331	0.0054284	-5.1945E-05	-0.00168	NaN	7.5876	208	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25729			28973	8039	16707	17176							-0.008283465334216089
VNELLFIQF	9	Unmodified	_VNELLFIQF_					0	0	0			REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.81332468205	2	561.813325	1121.6121	0.69835	0.00039234	-2.7221	-0.0015293	-2.0238	-0.001137	562.3136852581857	35.217	0.14478	35.217	35.168	35.313	0	1236	40	0.876284	0.023932874	0.876284	355.2979	0	9.703827						147	7	3	NaN	NaN	NaN	0.11656	1	13760	13760		33.425	0.97255	1	14856	+		28974	11685	16708	17177	23126	23126					0.05615486654187407
VNELLFIQF	9	Unmodified						0	0	0			REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.813325	1121.6121	0.69835	0.00039234	-2.7221	-0.0015293	-2.0238	-0.001137	562.3136852581857	35.217	0.14478	35.217	35.168	35.313	0	1236	40	0.876284	0.023932874	0.876284	355.2979		9.703827	0.00071841	-0.00087541	-0.001081	NaN	33.425	147	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14856	+		28975	11685	16708	17177							0.05615486654187407
VNELLFIQF	9	Unmodified						0	0	0			REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	REV__ENST00000310421.4_1_8:67543945-67544044:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.813325	1121.6121	0.94189	0.00052917	-0.81881	-0.00046002	0.12308	6.9148E-05	561.811817830138	35.215	0.14484	35.215	35.167	35.312	-4.5776E-05	1230	46	0.8799654	0.027605891	0.878446	356.79056		11.193085	-0.00071841	0.0012632	0.001081	NaN	33.425	137	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15738	+		28976	11685	16708	17177							0.05615486654187407
VNESIWQII	9	Unmodified	_VNESIWQII_					0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.8694797872334	3	367.86948	1100.58661	1.5974	0.00058765	-0.3211	-0.00011812	1.2763	0.00046953	367.86944381905835	20.141	0.072054	20.141	20.117	20.189	0	1485	43	0.72280174	0.026002407	0.72280174	439.69748	0	15.817871						63	4	2	NaN	NaN	NaN	0.58159	1	12874	12874		3.5794	0	1	8565	+		28977	10989	16709	17178	23127	23127					0.04034012131774034
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.3111461338501	2	635.311146	1268.60774	0.97066	0.00061667	-2.0624	-0.0013103	-1.0917	-0.00069358	635.309554802487	35.313	0.24124	35.313	35.265	35.506	0	1143	70	0.9332562	0.04218763	0.9332562	377.86502	0	17.081299						391	11	4	NaN	NaN	NaN	0.00098176	1	18201	18201		89.374	50.334	1	84997			28978	4814	16710	17179	23128	23128					-0.015820225593643045
VNFEFPEFQL	10	Unmodified	_VNFEFPEFQL_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.3111461338501	2	635.311146	1268.60774	1.1186	0.00071064	-1.9005	-0.0012074	-0.78189	-0.00049675	635.3098273988334	35.312	0.21704	35.312	35.263	35.48	-4.5776E-05	1140	67	0.93509084	0.040355563	0.9335714	378.60785	0	16.339508						395	10	4	NaN	NaN	NaN	0.075094	1	17390	17390		49.394	31.595	1	79319			28979	4814	16710	17179	23129	23129					-0.015820225593643045
VNGNGGAG	8	Unmodified	_VNGNGGAG_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.2950786457001	1	645.295079	644.287802	0.10675	6.8887E-05	-5.5819	-0.0036019	-5.4751	-0.0035331	645.2933687655577	53.264	0.1919	53.264	53.216	53.408	-0.00053787	669	196	1.2206948	0.11740804	1.2191753	249.69244	0	24.015747						896	9	4	NaN	NaN	NaN	0.84887	1	1769	1769		0.32989	0	1	105040	+		28980	10795	16711	17180	23130	23130					-0.04857020990232286
VNHNQKCK	8	Unmodified	_VNHNQKCK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.74799315855	2	485.747993	969.481433	2.1443	0.0010416	-2.7974	-0.0013588	-0.65309	-0.00031724	485.74639890510883	18.868	0.095968	18.868	18.844	18.94	0	1335	34	0.8154261	0.02032113	0.8154261	331.25156	0	8.255066						77	5	2	NaN	NaN	NaN	0.84727	1	7582	7582		1.2418	0	1	6357			28981	1116	16712	17181	23131	23131					-0.004528075456505576
VNIGVSGP	8	Unmodified	_VNIGVSGP_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	742.4093801220001	1	742.40938	741.402104	1.598	0.0011863	3.2621	0.0024218	4.8601	0.0036081	742.4132383490711	55.725	0.14446	55.725	55.677	55.821	0	471	88	1.3393306	0.05196941	1.3393306	273.21274	0	10.601318						206	7	3	NaN	NaN	NaN	0.82797	1	3940	3940		5.4659	0	1	24038	+		28982	10776	16713	17182	23132	23132					0.02105868771866426
VNIGVSGP	8	Unmodified						0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	742.40938	741.402104	1.598	0.0011863	3.2621	0.0024218	4.8601	0.0036081	742.4132383490711	55.725	0.14446	55.725	55.677	55.821	0	471	88	1.3393306	0.05196941	1.3393306	273.21274		10.601318	0	0	0	NaN	5.4659	206	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24038	+		28983	10776	16713	17182							0.02105868771866426
VNILMRPVLCL	11	Unmodified	_VNILMRPVLCL_					0	0	0			REV__ENST00000602169.1_1_19:47109218-47109290:+|nuORF	REV__ENST00000602169.1_1_19:47109218-47109290:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.8723363924001	2	635.872336	1269.73012	1.0593	0.00067356	5.9926	0.0038105	7.0519	0.0044841	636.3770617714138	41.448	0.16836	41.456	41.432	41.601	0.0082588	1248	73	0.8689189	0.044181406	0.86739945	351.8122	0	17.888367						278	8	4	NaN	NaN	NaN	0.77278	1	17417	17417		1.5054	0.32859	1	45698	+		28984	12963	16714	17183	23133	23133					0.1060439964685429
VNIVPKKP	8	Unmodified	_VNIVPKKP_					0	0	0		nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;ENST00000549774.5_1_12:42720030-42749025:+|nuORF;ENST00000550535.5_1_12:42720030-42753098:+|nuORF;PPHLN1-PTPRZ1|1|fusion;PPHLN1-PTPRZ1|4|fusion	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.5771141523	1	894.577114	893.569838	-0.35489	-0.00031748	-5.112	-0.0045731	-5.4669	-0.0048905	894.5718339862761	57.067	0.047981	57.066	57.066	57.114	-0.00053787	201	55	1.4997677	0.031941056	1.4982482	304.99307	0	6.495514						71	3	2	NaN	NaN	NaN	0.84887	1	5867	5867		0.32989	0	1	11547			28985	2859	16715	17184	23134	23134					0.11879556036456052
VNKVIHLT	8	Unmodified	_VNKVIHLT_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.5672777475	1	923.567278	922.560001	-0.69183	-0.00063895	-0.56592	-0.00052266	-1.2577	-0.0011616	923.5664538294025	52.761	0.07185	52.761	52.737	52.809	-0.00045395	237	61	1.4784646	0.0355314	1.4769452	300.51755	0	7.222229						145	4	4	NaN	NaN	NaN	0.8439	1	6330	6330		3.1533	0	1	19666			28986	1636	16716	17185	23135	23135					0.09562368031083679
VNLAATTPLL	10	Unmodified	_VNLAATTPLL_					0	0	0			REV__sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	REV__sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.6037228333001	1	1012.60372	1011.59645	1.4313	0.0014493	-1.3183	-0.001335	0.11291	0.00011433	1012.6030023950096	33.816	0.07243	33.814	33.79	33.863	-0.0018463	174	46	1.5157272	0.026587963	1.5142077	307.69266	0	5.397339						67	4	2	NaN	NaN	NaN	0.5626	1	8892	8892		16.858	4.8096	1	5233.7	+		28987	13332	16717	17186	23136	23136					0.0911120013714708
VNLYGSILFL	10	Unmodified	_VNLYGSILFL_					0	0	0		ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	ENSG00000169860|ENST00000305097|P2RY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.8289747462501	2	569.828975	1137.6434	1.2338	0.00070305	-3.1797	-0.0018119	-1.9459	-0.0011088	569.8272647994905	36.228	0.1687	36.229	36.181	36.349	0.0011024	1245	73	0.87076044	0.04417187	0.869241	352.99792	0	17.90683						211	8	3	NaN	NaN	NaN	0.41164	1	13908	13908		23.118	2.6043	1	25048			28988	4698	16718	17187	23137	23137					0.08008059688290814
VNMPNLMT	8	Unmodified	_VNMPNLMT_					0	0	0		nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1	nc|ENSG00000118473|Q9BQI5-4|SGIP1	nc|ENSG00000118473|Q9BQI5-4|SGIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	919.4375854824001	1	919.437585	918.430309	1.0706	0.00098434	-1.0961	-0.0010078	-0.025522	-2.3466E-05	919.4361322465272	29.449	0.12064	29.442	29.417	29.538	-0.0070667	303	97	1.4393384	0.05700767	1.437819	292.58398	0	11.588318						187	6	3	NaN	NaN	NaN	0.6053	1	6251	6251		24.961	0	1	16308			28989	2177	16719	17188	23138	23138					-0.032168926347253546
VNMYCVSDDQ	10	Unmodified	_VNMYCVSDDQ_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.82321299110004	3	391.823213	1172.44781	1.3753	0.00053887	-10.549	-0.0041334	-9.1739	-0.0035946	392.15322374015756	15.63	0.12007	15.63	15.606	15.726	0	1521	61	0.70049703	0.03720683	0.70049703	425.80646	0	22.6167						171	6	3	NaN	NaN	NaN	0.76991	1	15555	15555		2.9701	0.080602	1	11724			28990	904	16720	17189	23139	23139					-0.13151641890362953
VNNQNEEDDGP	11	Unmodified	_VNNQNEEDDGP_					0	0	0			REV__tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1	REV__tr|U7T5M7|U7T5M7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00018PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.8338225624333	3	410.833823	1229.47964	1.0859	0.00044614	-7.3512	-0.0030201	-6.2653	-0.002574	410.83013042045957	27.977	0.048262	27.968	27.943	27.992	-0.0089798	1467	55	0.7339432	0.033424437	0.7324238	445.89682	0	20.306519						91	3	2	NaN	NaN	NaN	0.73455	1	16526	16526		2.0359	0.18565	1	7310.1	+		28991	13616	16721	17190	23140	23140					-0.1259223461122474
VNPMKKLA	8	Unmodified	_VNPMKKLA_					0	0	0			REV__ENSG00000087095|ENST00000407008|NLK	REV__ENSG00000087095|ENST00000407008|NLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5335347781001	1	900.533535	899.526258	1.2897	0.0011615	7.2033	0.0064868	8.493	0.0076483	900.539995045892	31.959	0.14484	31.959	31.887	32.032	0	339	79	1.4179583	0.04637289	1.4179583	288.3273	0	9.429474						191	7	3	NaN	NaN	NaN	0.8439	1	6070	6070		3.1533	0	1	27523	+		28992	8692	16722	17191	23141	23141					0.07247623267687686
VNRIEGPVQL	10	Unmodified	_VNRIEGPVQL_					0	0	0			REV__ENST00000533482.5_1_5:131892940-131893078:+|nuORF	REV__ENST00000533482.5_1_5:131892940-131893078:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.5522621792667	3	375.552262	1123.63496	2.0243	0.00076023	1.6423	0.00061677	3.6666	0.001377	375.552897061539	19.948	0.24043	19.948	19.876	20.117	0	1458	55	0.7395112	0.033406258	0.7395112	449.74832	0	20.31668						393	11	5	NaN	NaN	NaN	0.507	1	13843	13843		11.561	0	1	174460	+		28993	12659	16723	17192	23142	23142					0.07808505771663476
VNRKAITYVNN	11	Unmodified	_VNRKAITYVNN_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	431.24208769550006	3	431.242088	1290.70443	1.3978	0.00060281	-3.3409	-0.0014407	-1.9431	-0.00083794	431.23954319923433	19.42	0.12	19.42	19.396	19.516	0	1398	52	0.77658504	0.031487107	0.77658504	471.55508	0	19.119476						94	6	2	NaN	NaN	NaN	0.7797	1	18606	18606		0.29401	0.1329	1	6438.3	+		28994	8368	16724	17193	23143	23143					0.07070964720423945
VNRVSLPNK	9	Unmodified	_VNRVSLPNK_					0	0	0			REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.6054541678	1	1026.60545	1025.59818	0.73487	0.00075442	2.2337	0.0022931	2.9685	0.0030475	1026.6076318808769	33.551	0.096565	33.549	33.525	33.621	-0.0018463	153	49	1.5281296	0.028334856	1.5266101	310.15338	0	5.750946						118	5	2	NaN	NaN	NaN	0.64666	1	9418	9418		3.5698	1.1083	1	11983	+		28995	12914	16725	17194	23144	23144					0.08640253945759468
VNSFAKGC	8	Unmodified	_VNSFAKGC_					0	0	0			REV__ZNF583|p.G336V|1|0.27|ENSG00000198440|chr19:56423665-56423665|G/T|missense_variant	REV__ZNF583|p.G336V|1|0.27|ENSG00000198440|chr19:56423665-56423665|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	825.3923498493001	1	825.39235	824.385073	1.9621	0.0016195	-10.669	-0.0088064	-8.7073	-0.0071869	825.3830919492223	22.501	0.096325	22.501	22.453	22.549	0	480	58	1.3339561	0.034048796	1.3339561	271.61862	0	6.9329834						119	5	2	NaN	NaN	NaN	0.80692	1	5084	5084		8.2903	0	1	12047	+		28996	13654	16726	17195	23145	23145					-0.03414375105592171
VNVLRPLL	8	Unmodified	_VNVLRPLL_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.6036632538002	1	923.603663	922.596387	1.8532	0.0017116	-1.3241	-0.0012229	0.52911	0.00048869	923.6039170577317	55.701	0.072357	55.701	55.701	55.773	0	129	85	1.5422925	0.049549222	1.5422925	313.49124	0	10.071564						188	4	3	NaN	NaN	NaN	0.8439	1	6461	6461		3.1533	0	1	18060	+		28997	11998	16727	17196	23146	23146					0.13199244927807285
VNVLRPLL	8	Unmodified						0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	923.603663	922.596387	1.8532	0.0017116	-1.3241	-0.0012229	0.52911	0.00048869	923.6039170577317	55.701	0.072357	55.701	55.701	55.773	0	129	85	1.5422925	0.049549222	1.5422925	313.49124		10.071564	-0.022702	-0.0020676	-0.00012504	NaN	3.1533	188	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18060	+		28998	11998	16727	17196							0.13199244927807285
VNVSVTFK	8	Unmodified	_VNVSVTFK_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.2581853166001	2	447.258185	892.501818	1.0245	0.00045821	2.9647	0.001326	3.9891	0.0017842	447.25939708010003	23.947	0.096493	23.947	23.899	23.995	0	1332	37	0.8172735	0.022167265	0.8172735	332.40213	0	9.0159						84	5	2	NaN	NaN	NaN	0.83211	1	5960	5960		4.9097	0	1	13535	+	+	28999	8269	16728	17197	23147	23147					0.051266863858245415
VNVSVTFK	8	Unmodified	_VNVSVTFK_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.2581853166001	2	447.258185	892.501818	1.2823	0.00057353	3.3231	0.0014863	4.6055	0.0020598	447.2597168298298	23.971	0.072403	23.958	23.934	24.006	-0.01305	1332	34	0.8172735	0.02032113	0.81575406	332.40213	0	8.265015						81	4	2	NaN	NaN	NaN	0.83211	1	5846	5846		4.9097	0	1	12545	+	+	29000	8269	16728	17197	23148	23148					0.051266863858245415
VNVSVTFK	8	Unmodified						0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	447.258185	892.501818	1.0245	0.00045821	2.9647	0.001326	3.9891	0.0017842	447.25939708010003	23.947	0.096493	23.947	23.899	23.995	0	1332	37	0.8172735	0.022167265	0.8172735	332.40213		9.0159	-0.0054376	-0.000157	0.00075972	NaN	4.9097	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13535	+	+	29001	8269	16728	17197							0.051266863858245415
VNVSVTFK	8	Unmodified						0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	447.258185	892.501818	1.2823	0.00057353	3.3231	0.0014863	4.6055	0.0020598	447.2597168298298	23.971	0.072403	23.958	23.934	24.006	-0.01305	1332	34	0.8172735	0.02032113	0.81575406	332.40213		8.265015	0.0054376	0.00016365	-0.00075972	NaN	4.9097	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12545	+	+	29002	8269	16728	17197							0.051266863858245415
VPAALKAL	8	Unmodified	_VPAALKAL_					0	0	0		FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.5134512629999	1	782.513451	781.506175	1.5218	0.0011908	-10.555	-0.0082594	-9.0332	-0.0070686	782.5049109467434	36.181	0.14471	36.181	36.133	36.278	0	591	82	1.26753	0.048587203	1.26753	258.325	0	9.902161						218	7	3	NaN	NaN	NaN	0.84945	1	4515	4515		0	0	1	18700			29003	7803	16729	17198	23149	23149					0.10668195599350838
VPAALKAL	8	Unmodified						0	0	0		FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	FNDC3A|p.P1053L|1|0.16|ENSG00000102531|chr13:49203160-49203160|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	782.513451	781.506175	1.6368	0.0012808	-11.844	-0.0092682	-10.207	-0.0079874	782.5040826971821	36.155	0.12054	36.157	36.132	36.253	0.0011024	588	73	1.2693287	0.043181658	1.2678093	258.69162		8.800507	-0.012327	-0.00059824	0.00013966	NaN	0	182	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15206			29004	7803	16729	17198							0.10668195599350838
VPAEELVEM	9	Unmodified	_VPAEELVEM_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.4968745003	1	1016.49687	1015.4896	2.6435	0.0026871	-0.58364	-0.00059326	2.0598	0.0020938	1016.496560382136	25.515	0.14472	25.515	25.491	25.636	0	210	88	1.4944444	0.051490545	1.4944444	303.35663	0	10.452057						272	7	4	NaN	NaN	NaN	0.023828	1	9188	9188		67.154	32.715	1	35865			29005	2685	16730	17199	23150	23150					-0.017527181395507796
VPAEELVEM	9	Unmodified	_VPAEELVEM_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.4968745003	1	1016.49687	1015.4896	2.2879	0.0023257	-1.1669	-0.0011861	1.121	0.0011395	1016.496188058342	25.515	0.12065	25.503	25.479	25.6	-0.0116	210	61	1.4944444	0.03549373	1.4929249	303.35663	0	7.2048645						267	6	4	NaN	NaN	NaN	0.032764	1	9009	9009		55.494	25.895	1	34852			29006	2685	16730	17199	23151	23151					-0.017527181395507796
VPAEELVEM	9	Oxidation (M)	_VPAEELVEM(Oxidation (M))_		VPAEELVEM(1)		VPAEELVEM(40)	0	0	1		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.4917891224	1	1032.49179	1031.48451	1.4156	0.0014616	-0.35728	-0.00036889	1.0584	0.0010928	1032.4917435460109	20.862	0.12052	20.862	20.79	20.911	0	228	76	1.4837929	0.044412017	1.4837929	301.1319	0	9.013306						163	6	3	NaN	NaN	NaN	0.070055	1	9834	9834		40.154	18.319	1	13531			29007	2685	16730	17200	23152	23152		306			-0.029970220021596106
VPAEELVEM	9	Oxidation (M)	_VPAEELVEM(Oxidation (M))_		VPAEELVEM(1)		VPAEELVEM(79)	0	0	1		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.4917891224	1	1032.49179	1031.48451	0.94373	0.00097439	-0.42858	-0.0004425	0.51515	0.00053189	1032.4906739968824	20.863	0.12035	20.849	20.776	20.897	-0.014088	225	76	1.4855686	0.044412017	1.4840492	301.49228	0	9.013306						179	6	3	NaN	NaN	NaN	0.01452	1	9624	9624		79.199	46.746	1	14977			29008	2685	16730	17200	23153	23153		306			-0.029970220021596106
VPAGFAAS	8	Unmodified	_VPAGFAAS_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3722663341999	1	719.372266	718.36499	1.712	0.0012316	-10.427	-0.0075008	-8.7149	-0.0062692	719.3647861691261	26.263	0.096468	26.252	26.228	26.324	-0.011137	591	55	1.26753	0.03237927	1.2660105	258.71655	0	6.6089478						99	5	2	NaN	NaN	NaN	0.84876	1	3495	3495		0.39566	0	1	9108.7	+		29009	8912	16731	17201	23154	23154					-0.005458027739223326
VPAGHPPF	8	Unmodified	_VPAGHPPF_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4304499151001	1	821.43045	820.423173	1.6883	0.0013869	-0.74629	-0.00061302	0.94206	0.00077384	821.4293937959519	26.36	0.19302	26.349	26.252	26.445	-0.011135	384	55	1.3911947	0.03214538	1.3896753	283.29587	0	6.5458984						233	9	2	NaN	NaN	NaN	0.77734	1	4915	4915		12.26	0	1	32736	+		29010	10904	16732	17202	23155	23155					0.005778788713769245
VPAGPTPL	8	Unmodified	_VPAGPTPL_					0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.4348665910001	1	751.434867	750.42759	1.2123	0.00091097	-2.0999	-0.0015779	-0.88759	-0.00066697	751.4332541673325	31.234	0.12069	31.229	31.181	31.302	-0.0050716	591	121	1.26753	0.07188487	1.2660105	258.50955	0	14.660751						293	6	3	NaN	NaN	NaN	0.72043	1	3992	3992		17.78	0	1	43386	+		29011	10388	16733	17203	23156	23156					0.04239343294284481
VPAGPTPL	8	Unmodified						0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.434867	750.42759	0.7277	0.00054682	-0.52563	-0.00039497	0.20207	0.00015184	751.4338753156766	31.235	0.096497	31.235	31.211	31.308	0	594	55	1.265731	0.03237927	1.265731	258.14267		6.603668	0.0030577	0.00077704	-0.00013975	NaN	17.78	113	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11440	+		29012	10388	16733	17203							0.04239343294284481
VPAGPTPL	8	Unmodified						0	0	0			REV__ENSG00000165655|ENST00000372524|ZNF503	REV__ENSG00000165655|ENST00000372524|ZNF503	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.434867	750.42759	1.2123	0.00091097	-2.0999	-0.0015779	-0.88759	-0.00066697	751.4332541673325	31.234	0.12069	31.229	31.181	31.302	-0.0050716	591	121	1.26753	0.07188487	1.2660105	258.50955		14.660751	-0.0030577	-0.00040592	0.00013975	NaN	17.78	293	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43386	+		29013	10388	16733	17203							0.04239343294284481
VPAGQDPV	8	Unmodified	_VPAGQDPV_					0	0	0		ENST00000461739.1_1_X:153175506-153175857:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000461739.1_1_X:153175506-153175857:-|nuORF	ENST00000461739.1_1_X:153175506-153175857:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4042947441	1	782.404295	781.397018	1.9988	0.0015639	4.7155	0.0036894	6.7143	0.0052533	782.4080544502135	30.439	0.24134	30.439	30.391	30.632	0	522	157	1.3088527	0.0934006	1.3088527	266.74725	0	19.035263						773	11	4	NaN	NaN	NaN	0.62311	1	4508	4508		23.85	1.7241	1	273850			29014	1044	16734	17204	23157	23157					-0.0024243509077450653
VPAKALAA	8	Unmodified	_VPAKALAA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	740.4665010703999	1	740.466501	739.459225	1.7256	0.0012778	-3.8649	-0.0028618	-2.1392	-0.001584	740.4638798910624	30.053	0.26553	30.053	29.956	30.222	0	615	40	1.2531329	0.023403764	1.2531329	255.64136	0	4.774399						134	12	2	NaN	NaN	NaN	0.84945	1	3901	3901		0	0	1	11577	+		29015	10223	16735	17205	23158	23158					0.07907336048208435
VPAKALAA	8	Unmodified	_VPAKALAA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.4665010703999	1	740.466501	739.459225	-0.21872	-0.00016195	-2.7346	-0.0020249	-2.9533	-0.0021868	740.4643774829995	58.003	0.048	58.002	57.978	58.026	-0.00051117	615	55	1.2531329	0.032407045	1.2516136	255.64136	0	6.611084						75	3	2	NaN	NaN	NaN	0.84887	1	3827	3827		0.32989	0	1	14955	+		29016	10223	16735	17205	23159	23159					0.07907336048208435
VPAKRPIA	8	Unmodified	_VPAKRPIA_					0	0	0		nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9|MGA	nc|ENSG00000174197|Q8IWI9|MGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.5461483749	1	851.546148	850.538872	1.9855	0.0016907	-8.4829	-0.0072236	-6.4974	-0.0055329	851.5390679974976	56.924	0.024025	56.924	56.924	56.948	0	366	43	1.4019053	0.024980664	1.4019053	285.31042	0	5.0839844						43	2	2	NaN	NaN	NaN	0.84651	1	5397	5397		1.6704	0	1	3283.2			29017	4929	16736	17206	23160	23160					0.10762402722218667
VPAKRPIA	8	Unmodified						0	0	0		nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9|MGA	nc|ENSG00000174197|Q8IWI9|MGA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.546148	850.538872	-0.073321	-6.2436E-05	-12.065	-0.010274	-12.138	-0.010336	851.5364987555193	56.923	0.023991	56.922	56.922	56.946	-0.00056458	360	37	1.405474	0.02140963	1.4039545	286.0367		4.3572083	-0.0011509	-0.0014805	0.0010246	NaN	1.6704	57	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3972.9			29018	4929	16736	17206							0.10762402722218667
VPALSEGQR	9	Unmodified	_VPALSEGQR_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.76162346255	2	478.761623	955.508694	1.6357	0.00078313	-2.8586	-0.0013686	-1.2229	-0.00058546	478.7602375233652	14.285	0.288	14.285	14.237	14.525	0	1341	70	0.8117308	0.042521834	0.8117308	329.81784	0	17.277222						360	13	2	NaN	NaN	NaN	0.21199	1	7223	7223		24.562	5.3984	1	51083			29019	2427	16737	17207	23161	23161					0.029159992663721823
VPAPAAAAL	9	Unmodified	_VPAPAAAAL_					0	0	0			REV__ENST00000603791.1_1_6:3751383-3751677:+|nuORF	REV__ENST00000603791.1_1_6:3751383-3751677:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	390.7343460795499	2	390.734346	779.454139	1.2333	0.00048189	-4.4311	-0.0017314	-3.1978	-0.0012495	390.7324194141498	28.822	0.14477	28.822	28.75	28.894	0	1329	55	0.81912065	0.033243716	0.81912065	333.8844	0	13.550598						161	7	3	NaN	NaN	NaN	0.6907	1	4481	4481		0	0	1	18035	+		29020	12970	16738	17208	23162	23162					0.0555903218559024
VPAPAAAAL	9	Unmodified						0	0	0			REV__ENST00000603791.1_1_6:3751383-3751677:+|nuORF	REV__ENST00000603791.1_1_6:3751383-3751677:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	390.734346	779.454139	1.2333	0.00048189	-4.4311	-0.0017314	-3.1978	-0.0012495	390.7324194141498	28.822	0.14477	28.822	28.75	28.894	0	1329	55	0.81912065	0.033243716	0.81912065	333.8844		13.550598	0.0045493	-0.00011366	-0.00016377	NaN	0	161	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18035	+		29021	12970	16738	17208							0.0555903218559024
VPAPDGQFAF	10	Unmodified	_VPAPDGQFAF_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5098224480998	1	1048.50982	1047.50255	2.1858	0.0022918	-1.6672	-0.0017481	0.51858	0.00054374	1048.5091114155177	26.674	0.19357	26.674	26.601	26.795	0	165	94	1.5210435	0.054954052	1.5210435	308.62955	0	11.150543						467	9	3	NaN	NaN	NaN	0.00037805	1	10520	10520		92.758	52.604	1	98170			29022	1952	16739	17209	23163	23163					-0.019305189651504406
VPAPDGQFAF	10	Unmodified	_VPAPDGQFAF_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5098224480998	1	1048.50982	1047.50255	1.494	0.0015665	-0.53156	-0.00055734	0.96248	0.0010092	1048.509570038896	26.673	0.21719	26.663	26.59	26.808	-0.010643	162	85	1.5228153	0.04962802	1.5212959	308.98904	0	10.069885						511	10	3	NaN	NaN	NaN	0.00071861	1	10309	10309		90.252	57.799	1	102260			29023	1952	16739	17209	23164	23164					-0.019305189651504406
VPAPPAAK	8	Unmodified	_VPAPPAAK_					0	0	0		nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	375.72906373639995	2	375.729064	749.443575	1.2579	0.00047263	-9.6694	-0.0036331	-8.4114	-0.0031604	375.7257141612611	20.67	0.1687	20.67	20.622	20.79	0	1536	40	0.69119483	0.024193645	0.69119483	281.93478	0	9.868469						131	8	3	NaN	NaN	NaN	0.84945	1	4049	4049		0	0	1	16826			29024	911	16740	17210	23165	23165					0.058830495311781306
VPAPPPAWP	9	Unmodified	_VPAPPPAWP_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	931.5036148582	1	931.503615	930.496338	1.9543	0.0018205	-7.7883	-0.0072548	-5.8339	-0.0054343	931.4983792115866	28.339	0.072376	28.339	28.339	28.412	0	324	58	1.42687	0.033857226	1.42687	289.99393	0	6.881073						71	4	2	NaN	NaN	NaN	0.48931	1	6621	6621		10.052	0	1	6265.1	+		29025	9985	16741	17211	23166	23166					0.028310075939771195
VPAPPPAWP	9	Unmodified						0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	931.503615	930.496338	1.9543	0.0018205	-7.7883	-0.0072548	-5.8339	-0.0054343	931.4983792115866	28.339	0.072376	28.339	28.339	28.412	0	324	58	1.42687	0.033857226	1.42687	289.99393		6.881073	0	0	0	NaN	10.052	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6265.1	+		29026	9985	16741	17211							0.028310075939771195
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.76162346254995	2	478.761623	955.508694	1.3464	0.00064459	-1.7416	-0.00083379	-0.39518	-0.0001892	478.7610642437541	14.308	0.28742	14.297	14.201	14.489	-0.011218	1341	70	0.8117308	0.042521834	0.81021136	329.8178	0	17.277222						348	13	3	NaN	NaN	NaN	0.13999	1	7085	7085		30.035	1.3689	1	44389			29027	1471	16742	17212	23167	23167					0.029159992663721823
VPATITDIF	9	Unmodified	_VPATITDIF_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.5349745661001	1	976.534975	975.527698	1.4267	0.0013932	-2.2792	-0.0022257	-0.85251	-0.0008325	976.5329527186955	30.776	0.14473	30.77	30.698	30.842	-0.0057545	258	55	1.4660252	0.03199196	1.4645058	297.7511	0	6.497589						191	7	3	NaN	NaN	NaN	0.030391	1	7612	7612		58.599	22.013	1	44188			29028	241	16743	17213	23168	23168					0.03895535837432362
VPAWDHTL	8	Unmodified	_VPAWDHTL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	469.74015973895	2	469.74016	937.465767	1.0167	0.00047758	-2.7879	-0.0013096	-1.7712	-0.00083199	469.7384335697833	20.959	0.16839	20.959	20.911	21.079	0	1341	43	0.8117308	0.025870264	0.8117308	329.90784	0	10.514313						188	8	3	NaN	NaN	NaN	0.40747	1	6765	6765		36.036	12.186	1	29950			29029	2494	16744	17214	23169	23169					-0.005467707910497666
VPAWDHTL	8	Unmodified	_VPAWDHTL_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.74015973895	2	469.74016	937.465767	-0.029623	-1.3915E-05	0.16782	7.883E-05	0.13819	6.4915E-05	469.7403661822875	20.983	0.19252	20.969	20.921	21.113	-0.014088	1341	43	0.8117308	0.025867462	0.81021136	329.90784	0	10.513153						198	9	3	NaN	NaN	NaN	0.35353	1	6624	6624		38.918	12.186	1	31052			29030	2494	16744	17214	23170	23170					-0.005467707910497666
VPCAAPCG	8	Unmodified	_VPCAAPCG_					0	0	0			REV__nc|ENSG00000221819|O95177|GAS8-AS1	REV__nc|ENSG00000221819|O95177|GAS8-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.3058430279	1	717.305843	716.298567	1.0621	0.00076183	-7.0477	-0.0050554	-5.9856	-0.0042935	717.3012618508703	22.187	0.096514	22.173	22.149	22.246	-0.013731	1320	49	0.824661	0.029549956	0.8231416	168.3313	0	6.0317993						99	5	3	NaN	NaN	NaN	0.84876	1	3462	3462		0.39566	0	1	10830	+		29031	13234	16745	17215	23171	23171					-0.0709307793182461
VPCGPGAA	8	Unmodified	_VPCGPGAA_					0	0	0		ENST00000375099.3_1_1:20517529-20518051:+|nuORF	ENST00000375099.3_1_1:20517529-20518051:+|nuORF	ENST00000375099.3_1_1:20517529-20518051:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	336.16269937014994	2	336.162699	670.310846	1.2069	0.00040573	6.2859	0.0021131	7.4929	0.0025188	336.16557979397265	42.363	0.19164	42.363	42.315	42.506	0	1530	43	0.6949163	0.026044786	0.6949163	284.05154	0	10.645966						163	9	3	NaN	NaN	NaN	0.84651	1	2600	2600		1.6704	0	1	13843			29032	6693	16746	17216	23172	23172					-0.03749718197138918
VPCGPGAA	8	Unmodified						0	0	0		ENST00000375099.3_1_1:20517529-20518051:+|nuORF	ENST00000375099.3_1_1:20517529-20518051:+|nuORF	ENST00000375099.3_1_1:20517529-20518051:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	336.162699	670.310846	1.4611	0.00049118	6.6412	0.0022325	8.1023	0.0027237	336.1649428975713	42.504	0.071903	42.514	42.514	42.586	0.0097351	1527	40	0.69677675	0.024183095	0.6952573	284.812		9.88501	0.075802	9.2802E-05	0.0001705	NaN	1.6704	46	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4130.7			29033	6693	16746	17216							-0.03749718197138918
VPDDAVEAL	9	Unmodified	_VPDDAVEAL_					0	0	0		ENST00000513666.5_1_5:96073558-96090478:+|nuORF;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	ENST00000513666.5_1_5:96073558-96090478:+|nuORF	ENST00000513666.5_1_5:96073558-96090478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	928.4622035535	1	928.462204	927.454927	2.3982	0.0022267	-0.42886	-0.00039818	1.9693	0.0018285	928.4618180899715	22.983	0.19256	22.983	22.911	23.103	0	363	100	1.4036897	0.05889249	1.4036897	285.29642	0	11.969727						344	9	3	NaN	NaN	NaN	0.04947	1	6538	6538		47.136	17.537	1	56021			29034	3798	16747	17217	23173	23173					-0.011702179559961223
VPDDAVEAL	9	Unmodified	_VPDDAVEAL_					0	0	0		ENST00000513666.5_1_5:96073558-96090478:+|nuORF;nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	ENST00000513666.5_1_5:96073558-96090478:+|nuORF	ENST00000513666.5_1_5:96073558-96090478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	928.4622035535	1	928.462204	927.454927	1.2726	0.0011816	0.66804	0.00062025	1.9407	0.0018018	928.4627439494756	23.007	0.26511	22.993	22.896	23.162	-0.01354	363	73	1.4036897	0.04281938	1.4021703	285.29642	0	8.702942						347	12	3	NaN	NaN	NaN	0.18779	1	6410	6410		26.115	4.28	1	54363			29035	3798	16747	17217	23174	23174					-0.011702179559961223
VPDEAYDLL	9	Unmodified	_VPDEAYDLL_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5040683681998	1	1034.50407	1033.49679	1.2435	0.0012864	1.655	0.0017121	2.8986	0.0029986	1034.5042922395548	27.856	0.28962	27.846	27.75	28.039	-0.009552	144	88	1.533442	0.0513705	1.5319226	311.20007	0	10.425262						677	13	4	NaN	NaN	NaN	0.030391	1	9709	9709		58.599	27.038	1	122290			29036	1148	16748	17218	23175	23175					-0.018616622674926475
VPDEDFFSL	9	Unmodified	_VPDEDFFSL_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.4884183039999	1	1068.48842	1067.48114	1.235	0.0013196	1.0223	0.0010924	2.2573	0.0024119	1069.4932948303815	31.67	0.21723	31.67	31.597	31.815	0	135	109	1.5387528	0.063712955	1.5387528	312.14688	0	12.924622						285	10	2	NaN	NaN	NaN	0.089764	1	11433	11433		37.302	12.74	1	35736			29037	2310	16749	17219	23176	23176					-0.049899487845323165
VPDEDFFSL	9	Unmodified	_VPDEDFFSL_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.4884183039999	1	1068.48842	1067.48114	0.3799	0.00040592	0.96483	0.0010309	1.3447	0.0014368	1068.489243750989	31.693	0.26551	31.688	31.592	31.857	-0.0044174	129	85	1.5422925	0.049575567	1.540773	312.86493	0	10.056763						377	12	2	NaN	NaN	NaN	0.089764	1	11164	11164		37.302	12.341	1	44129			29038	2310	16749	17219	23177	23177					-0.049899487845323165
VPDEDFVL	8	Unmodified	_VPDEDFVL_					0	0	0		ENSG00000176170|ENST00000592299|SPHK1;nc|ENSG00000176170|Q9NYA1-3|SPHK1;nc|ENSG00000176170|Q9NYA1-2|SPHK1	ENSG00000176170|ENST00000592299|SPHK1	ENSG00000176170|ENST00000592299|SPHK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4563898941	1	933.45639	932.449113	1.8965	0.0017703	0.59944	0.00055955	2.4959	0.0023298	933.4567277969649	27.977	0.2413	27.977	27.929	28.17	0	300	64	1.4411188	0.03739333	1.4411188	292.88086	0	7.599518						247	11	2	NaN	NaN	NaN	0.49126	1	6658	6658		31.561	4.8295	1	27598			29039	5015	16750	17220	23178	23178					-0.019813164676747874
VPDEDFVL	8	Unmodified	_VPDEDFVL_					0	0	0		ENSG00000176170|ENST00000592299|SPHK1;nc|ENSG00000176170|Q9NYA1-3|SPHK1;nc|ENSG00000176170|Q9NYA1-2|SPHK1	ENSG00000176170|ENST00000592299|SPHK1	ENSG00000176170|ENST00000592299|SPHK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	933.4563898941	1	933.45639	932.449113	1.1854	0.0011065	1.1831	0.0011044	2.3685	0.0022109	933.4573842210802	28.001	0.26542	27.992	27.919	28.185	-0.0089798	297	70	1.4428991	0.04095471	1.4413797	293.24265	0	8.323273						307	12	3	NaN	NaN	NaN	0.54545	1	6518	6518		28.667	1.935	1	28922			29040	5015	16750	17220	23179	23179					-0.019813164676747874
VPDEELDAL	9	Unmodified	_VPDEELDAL_					0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1000.4833329260999	1	1000.48333	999.476056	1.8473	0.0018482	-0.12329	-0.00012335	1.7241	0.0017249	1000.482583007233	24.791	0.28958	24.791	24.695	24.985	0	213	91	1.4926696	0.053280234	1.4926696	303.06137	0	10.817657						374	13	2	NaN	NaN	NaN	0.014046	1	8563	8563		80.639	27.88	1	56880			29041	5484	16751	17221	23180	23180					-0.02370252647142479
VPDEELDAL	9	Unmodified						0	0	0		ENSG00000186716|ENST00000305877|BCR;nc|ENSG00000186716|P11274-2|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	ENSG00000186716|ENST00000305877|BCR	ENSG00000186716|ENST00000305877|BCR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1000.48333	999.476056	1.5313	0.001532	1.5742	0.001575	3.1055	0.003107	1000.4847292912069	24.815	0.28953	24.803	24.682	24.972	-0.012394	213	73	1.4926696	0.042610645	1.4911501	303.06137		8.651367	0.0057888	0.0008416	-0.00075972	NaN	80.639	348	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47907			29042	5484	16751	17221							-0.02370252647142479
VPDEHGTDI	9	Unmodified	_VPDEHGTDI_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.7274462942	2	491.727446	981.44034	2.1271	0.0010459	5.9598	0.0029306	8.0869	0.0039765	491.72903625418854	28.122	0.024145	28.122	28.098	28.122	0	1320	28	0.824661	0.016619146	0.824661	334.94592	0	6.7500916						32	2	2	NaN	NaN	NaN	0.47587	1	7927	7927		10.605	3.0646	1	2461.9			29043	7995	16752	17222	23181	23181					-0.051122901041367186
VPDGDPST	8	Unmodified	_VPDGDPST_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.3468394447001	1	787.346839	786.339563	2.0171	0.0015882	4.5645	0.0035938	6.5816	0.005182	787.3508768132024	25.298	0.096472	25.298	25.274	25.371	0	525	61	1.3070582	0.03590405	1.3070582	266.35263	0	7.316559						104	5	2	NaN	NaN	NaN	0.84727	1	4580	4580		1.2418	0	1	7238.1	+		29044	10558	16753	17223	23182	23182					-0.06215322086984543
VPDGFLSEL	9	Unmodified	_VPDGFLSEL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	976.4985890597999	1	976.498589	975.491313	1.5405	0.0015043	0.87272	0.00085221	2.4132	0.0023565	976.4982474641076	30.849	0.2896	30.849	30.728	31.018	0	297	151	1.4428991	0.08888543	1.4428991	293.0543	0	18.052734						814	13	4	NaN	NaN	NaN	0.074859	1	7762	7762		39.459	12.163	1	140990			29045	6068	16754	17224	23183	23183					0.0025865894069738715
VPDGFTAVM	9	Oxidation (M)	_VPDGFTAVM(Oxidation (M))_		VPDGFTAVM(1)		VPDGFTAVM(50)	0	0	1		ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	952.4444449993001	1	952.444445	951.437169	1.7913	0.0017061	-0.30147	-0.00028713	1.4898	0.0014189	952.4444235803038	21.874	0.16866	21.874	21.802	21.97	0	315	73	1.4322147	0.042764783	1.4322147	290.98672	0	8.688629						168	8	3	NaN	NaN	NaN	0.043119	1	7114	7114		49.833	29.277	1	11219			29046	5022	16755	17225	23184	23184		527			-0.040492564824944566
VPDGFTAVM	9	Oxidation (M)	_VPDGFTAVM(Oxidation (M))_		VPDGFTAVM(1)		VPDGFTAVM(53)	0	0	1		ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENST00000478617.5_1_1:201952590-201969135:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4444449993001	1	952.444445	951.437169	1.5137	0.0014417	2.1957	0.0020913	3.7093	0.0035329	952.4467858953064	21.874	0.16854	21.86	21.764	21.932	-0.013895	312	46	1.433996	0.02671802	1.4324765	291.3486	0	5.4283752						125	8	2	NaN	NaN	NaN	0.036546	1	6983	6983		52.624	27.663	1	10723			29047	5022	16755	17225	23185	23185		527			-0.040492564824944566
VPDHQDIAF	9	Unmodified	_VPDHQDIAF_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.25363125495	2	521.253631	1040.49271	1.5416	0.00080357	-5.5262	-0.0028805	-3.9845	-0.002077	521.25071355079	19.683	0.24066	19.669	19.549	19.789	-0.014141	1308	103	0.83204526	0.06269193	0.8305259	337.68002	0	25.443115						365	11	2	NaN	NaN	NaN	0.11656	1	10006	10006		33.425	12.87	1	60461			29048	3443	16756	17226	23186	23186					-0.025917069705201357
VPDHQDIAF	9	Unmodified						0	0	0		ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	521.253631	1040.49271	1.8617	0.00097043	-7.4377	-0.003877	-5.576	-0.0029065	521.2502912354437	19.66	0.24013	19.66	19.564	19.804	0	1302	97	0.8357362	0.059004188	0.8357362	339.17798		23.946442	-0.0044029	-0.00085347	0.0026052	NaN	33.425	458	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63182			29049	3443	16756	17226							-0.025917069705201357
VPDHVITRL	9	Unmodified	_VPDHVITRL_					0	0	0		ENSG00000162433|ENST00000327299|AK4	ENSG00000162433|ENST00000327299|AK4	ENSG00000162433|ENST00000327299|AK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.30874083065	2	525.308741	1048.60293	1.6217	0.00085189	-2.4883	-0.0013071	-0.86656	-0.00045521	525.3073077680564	17.285	0.1438	17.285	17.261	17.405	0	1272	43	0.854179	0.025800347	0.854179	346.6278	0	10.469849						119	7	2	NaN	NaN	NaN	0.32672	1	10585	10585		17.198	5.65	1	11792			29050	4133	16757	17227	23187	23187					0.08057138088497595
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5571069917	1	1051.55711	1050.54983	2.4226	0.0025475	-1.2551	-0.0013198	1.1674	0.0012276	1051.556432259241	25.346	0.16889	25.346	25.274	25.443	0	120	73	1.5476005	0.042475224	1.5476005	314.00626	0	8.618195						206	8	2	NaN	NaN	NaN	0.074859	1	10652	10652		39.459	18.506	1	18769			29051	3356	16758	17228	23188	23188					0.026577603058512977
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2821917291501	2	526.282192	1050.54983	2.4669	0.0012983	-1.154	-0.00060731	1.3129	0.00069096	526.2817796664751	25.322	0.43428	25.322	25.202	25.636	0	1275	106	0.85233563	0.06451839	0.85233563	345.87143	0	26.18106						1519	19	5	NaN	NaN	NaN	0.0040938	1	10653	10653		104.71	46.475	1	1594900			29052	3356	16758	17228	23189	23189					0.026577603058512977
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5571069917	1	1051.55711	1050.54983	2.1536	0.0022646	-2.4219	-0.0025468	-0.26833	-0.00028216	1051.5586598555465	25.37	0.096498	25.358	25.358	25.455	-0.012011	123	115	1.5458313	0.067302465	1.5443119	313.6473	0	13.655579						117	5	2	NaN	NaN	NaN	0.12328	1	10431	10431		32.453	0.77731	1	8772			29053	3356	16758	17228	23190	23190					0.026577603058512977
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1051.5571069917	1	1051.55711	1050.54983	2.2016	0.0023151	-0.62501	-0.00065724	1.5766	0.0016579	1051.5556399246825	25.322	0.048233	25.31	25.262	25.31	-0.012011	129	64	1.5422925	0.037167907	1.540773	312.92926	0	7.541321						99	3	3	NaN	NaN	NaN	0.062072	1	10432	10432		41.785	15.67	1	6693.8			29054	3356	16758	17228	23191	23191					0.026577603058512977
VPDHVVWSL	9	Unmodified	_VPDHVVWSL_					0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.2821917291501	2	526.282192	1050.54983	2.5856	0.0013607	-0.65105	-0.00034264	1.9345	0.0010181	526.2818643092688	25.346	0.41015	25.334	25.189	25.6	-0.012011	1275	106	0.85233563	0.06453931	0.8508162	345.87143	0	26.189575						1400	18	4	NaN	NaN	NaN	0.023828	1	10433	10433		67.154	22.907	1	1597800			29055	3356	16758	17228	23192	23192					0.026577603058512977
VPDHVVWSL	9	Unmodified						0	0	0		ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENSG00000142089|ENST00000399808|IFITM3	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENST00000505282.1_1_4:66959972-66960239:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.282192	1050.54983	1.8421	0.00096948	-1.3555	-0.00071335	0.48667	0.00025612	526.2812916253251	25.66	0.072382	25.648	25.648	25.721	-0.011602	1275	70	0.85233563	0.04238403	0.8508162	345.87146		17.199127	0.16294	-0.00019519	-0.00075972	NaN	104.71	102	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11791			29056	3356	16758	17228							0.026577603058512977
VPDIEPAAL	9	Unmodified	_VPDIEPAAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	924.5036744376999	1	924.503674	923.496398	2.2377	0.0020688	0.22933	0.00021202	2.467	0.0022808	924.5034557924134	25.684	0.14478	25.684	25.612	25.757	0	327	76	1.425088	0.04457271	1.425088	289.66373	0	9.0598755						243	7	3	NaN	NaN	NaN	0.043119	1	6475	6475		49.833	5.5305	1	25762			29057	4549	16759	17229	23193	23193					0.031589628033202644
VPDIEPAAL	9	Unmodified	_VPDIEPAAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	924.5036744376999	1	924.503674	923.496398	1.6643	0.0015387	0.26284	0.00024299	1.9272	0.0017817	924.503586506188	25.708	0.14473	25.696	25.6	25.745	-0.0116	324	73	1.42687	0.042783022	1.4253505	290.02594	0	8.696106						232	7	2	NaN	NaN	NaN	0.089764	1	6352	6352		37.302	9.5135	1	26893			29058	4549	16759	17229	23194	23194					0.031589628033202644
VPDPDTGLYM	10	Unmodified	_VPDPDTGLYM_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.5026881596998	1	1107.50269	1106.49541	2.0841	0.0023082	-0.13551	-0.00015008	1.9486	0.0021581	1107.5019472332763	25.419	0.1448	25.419	25.371	25.515	0	129	46	1.5422925	0.026545644	1.5422925	312.72412	0	5.382538						94	7	2	NaN	NaN	NaN	0.16973	1	13117	13117		38.131	26.96	1	5950.3			29059	6143	16760	17230	23195	23195					-0.053576196278982025
VPDPFFVEL	9	Unmodified	_VPDPFFVEL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5506246303	1	1062.55062	1061.54335	1.4127	0.001501	3.6113	0.0038372	5.0239	0.0053382	1062.5510455530882	35.144	0.26546	35.144	35.048	35.313	0	129	142	1.5422925	0.08320296	1.5422925	312.88724	0	16.879486						1319	12	6	NaN	NaN	NaN	0.021751	1	11184	11184		69.782	30.864	1	418080			29060	2053	16761	17231	23196	23196					0.015038223544706852
VPDPFFVEL	9	Unmodified	_VPDPFFVEL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5506246303	1	1062.55062	1061.54335	1.5837	0.0016828	3.4511	0.0036669	5.0348	0.0053497	1062.5507106348293	35.143	0.45837	35.143	34.998	35.456	-4.5776E-05	126	142	1.544062	0.08320296	1.5425426	313.24625	0	16.879486						1495	20	6	NaN	NaN	NaN	8.7755E-05	1	10931	10931		123.66	79.355	1	436220			29061	2053	16761	17231	23197	23197					0.015038223544706852
VPDPKELLL	9	Unmodified	_VPDPKELLL_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.3078751634001	2	512.307875	1022.6012	2.6393	0.0013521	-1.8932	-0.00096989	0.74614	0.00038225	512.3070604404642	26.143	0.19307	26.143	26.046	26.239	0	1215	136	0.8891654	0.08291638	0.8891654	360.94424	0	33.658752						801	9	4	NaN	NaN	NaN	0.040769	1	9472	9472		50.831	6.1923	1	181370			29062	3145	16762	17232	23198	23198					0.09080084279912626
VPDPKELLL	9	Unmodified						0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.307875	1022.6012	1.9721	0.0010103	-1.4932	-0.00076497	0.47896	0.00024538	512.3069762321607	26.143	0.24133	26.131	26.035	26.276	-0.011137	1215	133	0.8891654	0.08106941	0.88764596	360.94424		32.908966	-0.0056852	0.00020535	-0.00075972	NaN	50.831	775	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172910			29063	3145	16762	17232							0.09080084279912626
VPDPNVIKL	9	Unmodified	_VPDPNVIKL_					0	0	0		ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.8002173068	2	497.800217	993.585882	2.2321	0.0011111	-3.222	-0.0016039	-0.98995	-0.0004928	497.79868254003026	22.887	0.33727	22.887	22.766	23.103	0	1329	73	0.81912065	0.04431057	0.81912065	332.6395	0	17.994232						531	15	4	NaN	NaN	NaN	0.03533	1	8352	8352		53.14	23.542	1	165300			29064	7602	16763	17233	23199	23199					0.0888321748270755
VPDPNVIKL	9	Unmodified	_VPDPNVIKL_					0	0	0		ENST00000562140.2_1_16:70398455-70404584:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	ENST00000562140.2_1_16:70398455-70404584:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.8002173068	2	497.800217	993.585882	1.4809	0.00073719	-1.7574	-0.00087484	-0.27653	-0.00013766	497.79941630612456	22.91	0.31323	22.896	22.776	23.089	-0.01354	1329	76	0.81912065	0.046164393	0.8176012	332.6395	0	18.74704						601	14	4	NaN	NaN	NaN	0.013093	1	8189	8189		83.529	44.611	1	178410			29065	7602	16763	17233	23200	23200					0.0888321748270755
VPDSFLVAL	9	Unmodified	_VPDSFLVAL_					0	0	0		ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	960.5400599440001	1	960.54006	959.532783	1.0336	0.00099283	0.64604	0.00062055	1.6797	0.0016134	960.5404799171341	32.949	0.19313	32.949	32.876	33.069	0	228	103	1.4837929	0.060422778	1.4837929	301.42966	0	12.27478						337	9	2	NaN	NaN	NaN	0.030391	1	7332	7332		58.599	24.16	1	57134			29066	4800	16764	17234	23201	23201					0.05139839700041193
VPDSFLVAL	9	Unmodified	_VPDSFLVAL_					0	0	0		ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	960.5400599440001	1	960.54006	959.532783	1.2357	0.0011869	0.88515	0.00085022	2.1208	0.0020371	960.5396873340358	32.948	0.24113	32.945	32.825	33.066	-0.0024757	228	94	1.4837929	0.05508256	1.4822735	301.42966	0	11.189941						558	11	4	NaN	NaN	NaN	0.030391	1	7184	7184		58.599	16.815	1	64310			29067	4800	16764	17234	23202	23202					0.05139839700041193
VPDSPENEL	9	Unmodified	_VPDSPENEL_					0	0	0		nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ	nc|ENSG00000132849|Q8NI35-4|PATJ	nc|ENSG00000132849|Q8NI35-4|PATJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.23510415079994	2	500.235104	998.455655	1.3582	0.00067942	0.10345	5.1752E-05	1.4617	0.00073117	500.23531953517056	19.779	0.096292	19.765	19.717	19.813	-0.014141	1347	61	0.8080346	0.036949456	0.8065152	328.11566	0	15.003937						103	5	2	NaN	NaN	NaN	0.35794	1	8328	8328		15.463	7.9223	1	10150			29068	2797	16765	17235	23203	23203					-0.043634233069496986
VPDSTYEMI	9	Oxidation (M)	_VPDSTYEM(Oxidation (M))I_		VPDSTYEM(1)I		VPDSTYEM(93)I	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4710536802997	1	1070.47105	1069.46378	1.5424	0.0016511	0.98764	0.0010572	2.53	0.0027083	1070.4721062467374	20.622	0.21688	20.622	20.573	20.79	0	192	61	1.5050892	0.0354712	1.5050892	305.31076	0	7.1954346						239	10	2	NaN	NaN	NaN	0.0094682	1	11520	11520		93.472	37.978	1	21855			29069	1003	16766	17236	23204	23204		111			-0.06817612381837534
VPDSTYEMI	9	Oxidation (M)	_VPDSTYEM(Oxidation (M))I_		VPDSTYEM(1)I		VPDSTYEM(83)I	0	0	1		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4710536802997	1	1070.47105	1069.46378	0.95187	0.0010189	1.3681	0.0014645	2.3199	0.0024834	1070.472117022779	20.67	0.24105	20.656	20.535	20.776	-0.014086	192	85	1.5050892	0.04963863	1.5035697	305.31076	0	10.069305						258	11	2	NaN	NaN	NaN	0.013281	1	11237	11237		82.96	50.507	1	20229			29070	1003	16766	17236	23205	23205		111			-0.06817612381837534
VPDSTYEMI	9	Unmodified	_VPDSTYEMI_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.4761390581998	1	1054.47614	1053.46886	1.4519	0.001531	0.51145	0.00053931	1.9634	0.0020703	1054.4752368946706	24.623	0.26524	24.61	24.514	24.779	-0.012394	183	64	1.510409	0.037238836	1.5088896	306.44916	0	7.55542						304	12	3	NaN	NaN	NaN	0.04947	1	10551	10551		47.136	22.175	1	28505			29071	1003	16766	17237	23206	23206					-0.055733085192287035
VPDTESETRIL	11	Unmodified	_VPDTESETRIL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.3275244795501	2	630.327524	1258.6405	1.3609	0.00085779	-2.0291	-0.001279	-0.66825	-0.00042121	630.3260802256978	19.803	0.21656	19.789	19.717	19.934	-0.014141	1170	49	0.91673553	0.029381156	0.9152161	371.20764	0	11.897125						243	10	3	NaN	NaN	NaN	0.53369	1	17200	17200		26.989	16.024	1	20563			29072	2469	16767	17238	23207	23207					0.021521397728292868
VPDVAQFVL	9	Unmodified	_VPDVAQFVL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	987.5509589813001	1	987.550959	986.543683	1.5015	0.0014828	-1.4638	-0.0014456	0.03767	3.7201E-05	987.549523664672	31.839	0.16895	31.839	31.766	31.935	0	246	64	1.4731345	0.037310004	1.4731345	299.14847	0	7.5765076						229	8	3	NaN	NaN	NaN	0.030696	1	8107	8107		58.2	26.524	1	32341			29073	5645	16768	17239	23208	23208					0.049872420743326984
VPDVAQFVL	9	Unmodified	_VPDVAQFVL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.5509589813001	1	987.550959	986.543683	0.89851	0.00088732	-1.2937	-0.0012776	-0.39516	-0.00039024	987.5500401248189	31.813	0.12064	31.809	31.785	31.906	-0.0044155	246	64	1.4731345	0.037310004	1.4716152	299.14847	0	7.5765076						208	6	3	NaN	NaN	NaN	0.024221	1	7941	7941		66.656	34.204	1	31589			29074	5645	16768	17239	23209	23209					0.049872420743326984
VPDVAQFVL	9	Unmodified						0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	987.550959	986.543683	1.4145	0.0013969	-2.5447	-0.002513	-1.1303	-0.0011162	987.5514889275335	31.982	0.096498	31.979	31.93	32.027	-0.0037594	234	37	1.4802408	0.021318913	1.4787214	300.59155		4.3292236	0.069984	-0.00087258	0.0027934	NaN	58.2	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4711.3			29075	5645	16768	17239							0.049872420743326984
VPDVVIDIL	9	Unmodified	_VPDVVIDIL_					0	0	0		nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant;ENSG00000198920|ENST00000361413|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5819247587002	1	982.581925	981.574648	1.4515	0.0014262	-1.622	-0.0015937	-0.17045	-0.00016748	982.5802831860735	34.131	0.12057	34.131	34.107	34.228	0	222	85	1.4873441	0.04970193	1.4873441	302.05505	0	10.093628						247	6	3	NaN	NaN	NaN	0.032764	1	7949	7949		55.494	11.191	1	26875			29076	5839	16769	17240	23210	23210					0.08312395388577443
VPDVVIDIL	9	Unmodified	_VPDVVIDIL_					0	0	0		nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant;ENSG00000198920|ENST00000361413|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5819247587002	1	982.581925	981.574648	1.3628	0.001339	-1.1762	-0.0011557	0.18657	0.00018332	982.5810608332418	34.13	0.14484	34.129	34.08	34.225	-0.0012474	219	67	1.4891195	0.03906393	1.4876001	302.4156	0	7.9332275						233	7	3	NaN	NaN	NaN	0.023828	1	7779	7779		67.154	14.53	1	26649			29077	5839	16769	17240	23211	23211					0.08312395388577443
VPEAAQLAL	9	Unmodified	_VPEAAQLAL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	911.5196588528999	1	911.519659	910.512382	1.964	0.0017902	0.39214	0.00035744	2.3561	0.0021477	911.5205984850171	25.153	0.07238	25.153	25.153	25.226	0	339	46	1.4179583	0.026737928	1.4179583	288.2749	0	5.4358826						87	4	2	NaN	NaN	NaN	0.38313	1	6236	6236		14.425	0.68797	1	6924.2			29078	5177	16770	17241	23212	23212					0.05354669040207227
VPEAAQLAL	9	Unmodified	_VPEAAQLAL_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	911.5196588528999	1	911.519659	910.512382	2.2916	0.0020889	-2.1021	-0.0019161	0.18955	0.00017278	911.5179387793536	25.177	0.072412	25.165	25.141	25.214	-0.012011	336	46	1.419741	0.02674079	1.4182216	288.63736	0	5.436493						75	4	2	NaN	NaN	NaN	0.11656	1	6114	6114		33.425	5.6365	1	5730.5			29079	5177	16770	17241	23213	23213					0.05354669040207227
VPEEKAAEL	9	Unmodified	_VPEEKAAEL_					0	0	0		ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	ENST00000484231.1_1_3:99998514-100002656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.263664625	2	493.263665	984.512776	1.9319	0.00095295	-2.5104	-0.0012383	-0.57851	-0.00028536	493.26216133919723	15.678	0.31198	15.678	15.606	15.918	0	1335	49	0.8154261	0.029559612	0.8154261	331.18082	0	12.005463						372	14	4	NaN	NaN	NaN	0.05973	1	8033	8033		42.779	7.4825	1	102680			29080	509	16771	17242	23214	23214					0.01990043969431099
VPEENLTQLM	10	Unmodified	_VPEENLTQLM_					0	0	0			REV__nc|ENSG00000239264|Q8NBS9-2|TXNDC5	REV__nc|ENSG00000239264|Q8NBS9-2|TXNDC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.2946387899	2	587.294639	1172.57472	2.0936	0.0012296	-5.4385	-0.003194	-3.3449	-0.0019644	587.7906804154051	23.224	0.048218	23.224	23.224	23.272	0	1182	58	0.9093879	0.034907043	0.9093879	368.52557	0	14.145966						67	3	2	NaN	NaN	NaN	0.66626	1	15570	15570		10.36	0	1	8603.8	+		29081	11332	16772	17243	23215	23215					-0.004659726737600067
VPEETKQPSG	10	Unmodified	_VPEETKQPSG_					0	0	0		EPB41L3|p.S787P|1|0.17|ENSG00000082397|chr18:5398134-5398134|A/G|missense_variant	EPB41L3|p.S787P|1|0.17|ENSG00000082397|chr18:5398134-5398134|A/G|missense_variant	EPB41L3|p.S787P|1|0.17|ENSG00000082397|chr18:5398134-5398134|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1071.5316801022	1	1071.53168	1070.5244	1.8047	0.0019338	-0.31806	-0.00034082	1.4867	0.001593	1071.5322481186095	15.51	0.14411	15.51	15.462	15.606	0	165	49	1.5210435	0.028352857	1.5210435	308.54324	0	5.7513733						179	7	3	NaN	NaN	NaN	0.64158	1	11577	11577		12.049	1.6885	1	11524			29082	7794	16773	17244	23216	23216					-0.008037590072262901
VPEKLQPLL	9	Unmodified	_VPEKLQPLL_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8236924031002	2	518.823692	1035.63283	2.2048	0.0011439	-1.8499	-0.00095977	0.35491	0.00018413	518.8225709780527	22.887	0.241	22.887	22.79	23.031	0	1263	55	0.85970795	0.03316474	0.85970795	348.92807	0	13.46048						370	11	4	NaN	NaN	NaN	0.077759	1	10044	10044		39.039	2.8043	1	108090			29083	5175	16774	17245	23217	23217					0.11644077033861322
VPELEEVARVL	11	Unmodified	_VPELEEVARVL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3586276427001	2	627.358628	1252.7027	1.6908	0.0010607	-3.7391	-0.0023458	-2.0484	-0.0012851	627.355973573959	27.977	0.12064	27.977	27.905	28.026	0	1116	58	0.94976085	0.034831822	0.94976085	384.60016	0	14.10495						199	6	3	NaN	NaN	NaN	0.36851	1	17847	17847		23.177	7.3547	1	25631			29084	1499	16775	17246	23218	23218					0.08645910911809551
VPELEEVARVL	11	Unmodified	_VPELEEVARVL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.3586276427001	2	627.358628	1252.7027	0.80845	0.00050719	-2.9182	-0.0018307	-2.1097	-0.0013236	627.3564055225918	28.001	0.14477	27.992	27.895	28.04	-0.0089798	1119	52	0.9479278	0.031161964	0.94640833	383.85785	0	12.618866						166	7	2	NaN	NaN	NaN	0.048526	1	17081	17081		50.211	29.698	1	27518			29085	1499	16775	17246	23219	23219					0.08645910911809551
VPENHSVAL	9	Unmodified	_VPENHSVAL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	483.2561739439	2	483.256174	964.497795	2.3744	0.0011475	-2.0352	-0.00098352	0.33925	0.00016395	483.25526092136005	15.966	0.52782	15.966	15.798	16.326	0	1308	88	0.83204526	0.053562284	0.83204526	338.02722	0	21.760254						1006	23	4	NaN	NaN	NaN	0.04743	1	7468	7468		48.002	20.213	1	493760			29086	4600	16776	17247	23220	23220					0.01412596892100737
VPENHSVAL	9	Unmodified	_VPENHSVAL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.2561739439	2	483.256174	964.497795	3.1572	0.0015257	-2.6566	-0.0012838	0.50053	0.00024188	483.2550127949599	15.987	0.45529	15.975	15.855	16.31	-0.012611	1308	91	0.83204526	0.055406213	0.8305259	338.02722	0	22.5094						1084	20	5	NaN	NaN	NaN	0.04743	1	7316	7316		48.002	16.441	1	544920			29087	4600	16776	17247	23221	23221					0.01412596892100737
VPEPENSAL	9	Unmodified	_VPEPENSAL_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	955.4731025908001	1	955.473103	954.465826	1.6711	0.0015967	-1.7449	-0.0016672	-0.073817	-7.053E-05	955.4718703392854	19.084	0.11993	19.084	19.06	19.18	0	339	52	1.4179583	0.030315995	1.4179583	288.07715	0	6.1590576						117	6	2	NaN	NaN	NaN	0.064504	1	7190	7190		40.957	13.661	1	10484			29088	4983	16777	17248	23222	23222					-0.013228155817046172
VPEPENSAL	9	Unmodified						0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	955.473103	954.465826	1.7824	0.001703	0.41849	0.00039985	2.2009	0.0021029	955.4739387282483	19.106	0.12016	19.092	19.044	19.164	-0.014141	339	46	1.4179583	0.02674079	1.4164388	288.07715		5.43277	0.0037834	0.00099149	-0.00075972	NaN	40.957	127	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10606			29089	4983	16777	17248							-0.013228155817046172
VPEPSQGEI	9	Unmodified	_VPEPSQGEI_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9-4|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9-4|TBC1D30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4731025908001	1	955.473103	954.465826	1.7824	0.001703	0.41849	0.00039985	2.2009	0.0021029	955.4739387282483	19.106	0.12016	19.092	19.044	19.164	-0.014141	339	46	1.4179583	0.02674079	1.4164388	288.07715	0	5.43277						127	6	2	NaN	NaN	NaN	0.21199	1	7043	7043		24.562	1.4444	1	10606	+		29090	9097	16778	17249	23223	23223					-0.013228155817046172
VPEQSAVTL	9	Unmodified	_VPEQSAVTL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.25838228185006	2	472.258382	942.502212	1.1532	0.00054462	-2.178	-0.0010286	-1.0248	-0.00048398	472.2574018112338	21.151	0.16863	21.151	21.055	21.224	0	1338	61	0.81357855	0.036961496	0.81357855	330.6333	0	15.020905						233	8	3	NaN	NaN	NaN	0.12866	1	6878	6878		31.675	6.7144	1	42105			29091	4394	16779	17250	23224	23224					0.028660613150123027
VPEQSAVTL	9	Unmodified	_VPEQSAVTL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.5094880971002	1	943.509488	942.502212	1.6378	0.0015453	-0.65066	-0.0006139	0.98719	0.00093142	943.5088729551982	21.127	0.31307	21.127	21.055	21.368	0	282	112	1.4517976	0.06588364	1.4517976	295.0053	0	13.387543						702	14	3	NaN	NaN	NaN	0.030545	1	6883	6883		58.398	13.233	1	152990			29092	4394	16779	17250	23225	23225					0.028660613150123027
VPEQSAVTL	9	Unmodified	_VPEQSAVTL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5094880971002	1	943.509488	942.502212	1.669	0.0015747	-0.54925	-0.00051822	1.1197	0.0010565	943.5089758912666	21.128	0.33697	21.114	21.017	21.354	-0.014004	282	121	1.4517976	0.07122922	1.4502782	295.0053	0	14.473785						770	15	4	NaN	NaN	NaN	0.03618	1	6750	6750		52.78	7.6148	1	156190			29093	4394	16779	17250	23226	23226					0.028660613150123027
VPEQSAVTL	9	Unmodified						0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	472.258382	942.502212	0.14553	6.8728E-05	-1.5131	-0.00071459	-1.3676	-0.00064586	472.2580318780108	21.128	0.26484	21.114	21.041	21.306	-0.014004	1338	73	0.81357855	0.044368207	0.8120591	330.6333		18.030975	-0.01893	0.00032834	-0.00075972	NaN	31.675	302	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42247			29094	4394	16779	17250							0.028660613150123027
VPERETLFNTL	11	Unmodified	_VPERETLFNTL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.8537094403001	2	659.853709	1317.69287	1.1175	0.00073736	-2.3069	-0.0015222	-1.1895	-0.00078488	659.8526642766518	24.406	0.14473	24.406	24.357	24.502	0	1098	67	0.960755	0.0403077	0.960755	388.84293	0	16.313568						265	7	4	NaN	NaN	NaN	0.349	1	19075	19075		25.694	17.417	1	29149			29095	7939	16780	17251	23227	23227					0.04672722906434501
VPERETLFNTL	11	Unmodified						0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	659.853709	1317.69287	1.395	0.00092052	-1.4678	-0.00096854	-0.072776	-4.8022E-05	659.8526698411673	24.429	0.16891	24.417	24.368	24.537	-0.012749	1098	67	0.960755	0.0403077	0.9592356	388.8429		16.313568	0.0055787	0.00068996	-0.00075972	NaN	25.694	242	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26463			29096	7939	16780	17251							0.04672722906434501
VPETYAVVL	9	Unmodified	_VPETYAVVL_					0	0	0		SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant;nc|ENSG00000144306|Q0VDG4-2|SCRN3;ENSG00000144306|ENST00000272732|SCRN3	SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5506246303001	1	990.550625	989.543348	1.8857	0.0018678	-0.15888	-0.00015738	1.7268	0.0017105	990.5504228678882	27.35	0.14483	27.35	27.302	27.446	0	192	85	1.5050892	0.049685955	1.5050892	305.6247	0	10.089294						269	7	3	NaN	NaN	NaN	0.094712	1	8204	8204		36.586	16.031	1	29457			29097	3470	16781	17252	23228	23228					0.04815822354487409
VPETYAVVL	9	Unmodified	_VPETYAVVL_					0	0	0		SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant;nc|ENSG00000144306|Q0VDG4-2|SCRN3;ENSG00000144306|ENST00000272732|SCRN3	SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5506246303001	1	990.550625	989.543348	1.3541	0.0013413	0.091861	9.0993E-05	1.4459	0.0014323	990.550777848677	27.373	0.16894	27.363	27.291	27.46	-0.010126	192	88	1.5050892	0.051457763	1.5035697	305.6247	0	10.449066						295	8	3	NaN	NaN	NaN	0.043119	1	8035	8035		49.833	23.101	1	31351			29098	3470	16781	17252	23229	23229					0.04815822354487409
VPEVYTPVL	9	Unmodified	_VPEVYTPVL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5662746945001	1	1016.56627	1015.559	2.3855	0.0024251	-1.5074	-0.0015324	0.87809	0.00089263	1016.5647470618703	27.953	0.14476	27.953	27.929	28.074	0	171	97	1.5174994	0.056747913	1.5174994	308.0363	0	11.519226						313	7	3	NaN	NaN	NaN	0.12328	1	9212	9212		32.453	2.8544	1	36473			29099	6112	16782	17253	23230	23230					0.05184108871515036
VPEVYTPVL	9	Unmodified	_VPEVYTPVL_					0	0	0		nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5662746945001	1	1016.56627	1015.559	1.4837	0.0015083	-1.4245	-0.0014481	0.059198	6.0179E-05	1016.5648229044197	27.977	0.1448	27.968	27.919	28.064	-0.0089798	168	79	1.5192716	0.046092987	1.5177522	308.396	0	9.356384						327	7	3	NaN	NaN	NaN	0.055351	1	9039	9039		44.638	15.04	1	36468			29100	6112	16782	17253	23231	23231					0.05184108871515036
VPFDGDDIQL	10	Unmodified	_VPFDGDDIQL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.5364311291	1	1118.53643	1117.52915	1.2123	0.001356	0.1358	0.0001519	1.3481	0.0015079	1118.5368840716244	28.507	0.26544	28.499	28.354	28.62	-0.0083485	90	67	1.5652816	0.03888619	1.5637622	317.3469	0	7.8838196						327	12	3	NaN	NaN	NaN	0.10967	1	13176	13176		44.633	12.181	1	28333			29101	6089	16783	17254	23232	23232					-0.02490874864452053
VPFPEESIV	9	Unmodified	_VPFPEESIV_					0	0	0		ENST00000530859.1_1_11:108029671-108040846:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENST00000530859.1_1_11:108029671-108040846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5298891882001	1	1016.52989	1015.52261	1.5426	0.0015681	1.6295	0.0016565	3.1721	0.0032245	1016.5315222047508	28.749	0.096514	28.74	28.692	28.789	-0.0083504	192	64	1.5050892	0.037250638	1.5035697	305.51724	0	7.561493						124	5	2	NaN	NaN	NaN	0.12945	1	9023	9023		31.561	3.0658	1	15123			29102	3671	16784	17255	23233	23233					0.015472319748141672
VPFRLIWWF	9	Unmodified	_VPFRLIWWF_					0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3554940580001	2	632.355494	1262.69644	0.9747	0.00061636	6.7634	0.0042769	7.7381	0.0048932	632.3600321743859	35.217	0.193	35.217	35.168	35.361	0	1257	82	0.86339295	0.04971218	0.86339295	349.59576	0	20.128906						658	9	6	NaN	NaN	NaN	0.68748	1	18065	18065		0.27539	0.045253	1	176250	+		29103	11298	16785	17256	23234	23234					0.07559482261603989
VPFRLIWWF	9	Unmodified						0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	632.355494	1262.69644	0.9747	0.00061636	6.7634	0.0042769	7.7381	0.0048932	632.3600321743859	35.217	0.193	35.217	35.168	35.361	0	1257	82	0.86339295	0.04971218	0.86339295	349.59576		20.128906	0.00071841	0.00012494	-0.00016137	NaN	0.27539	658	9	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176250	+		29104	11298	16785	17256							0.07559482261603989
VPFSEWLL	8	Unmodified	_VPFSEWLL_					0	0	0		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5294952577002	1	990.529495	989.522219	1.2516	0.0012397	2.4718	0.0024484	3.7234	0.0036881	990.5293428841044	35.41	0.12061	35.41	35.385	35.506	0	189	55	1.5068626	0.03192067	1.5068626	305.9849	0	6.481842						144	6	3	NaN	NaN	NaN	0.40747	1	8197	8197		36.036	7.3698	1	10028			29105	6166	16786	17257	23235	23235					0.027038570456284106
VPFSEWLL	8	Unmodified	_VPFSEWLL_					0	0	0		ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	ENSG00000266412|ENST00000581486|NCOA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	990.5294952577002	1	990.529495	989.522219	1.1022	0.0010917	1.4039	0.0013906	2.5061	0.0024823	990.5318421659223	35.408	0.12046	35.409	35.385	35.505	0.00053024	186	79	1.5086359	0.0461272	1.5071164	306.34497	0	9.366638						119	6	2	NaN	NaN	NaN	0.40747	1	8030	8030		36.036	2.338	1	10178			29106	6166	16786	17257	23236	23236					0.027038570456284106
VPFWADVVL	9	Unmodified	_VPFWADVVL_					0	0	0		ENSG00000203797|ENST00000368924|DDO;nc|ENSG00000203797|Q99489-3|DDO	ENSG00000203797|ENST00000368924|DDO	ENSG00000203797|ENST00000368924|DDO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5716944234	1	1045.57169	1044.56442	1.7668	0.0018474	-6.3697	-0.00666	-4.6029	-0.0048127	1046.565724124343	36.543	0.19289	36.543	36.471	36.663	0	138	133	1.5369828	0.077797174	1.5369828	311.87512	0	15.786133						404	9	3	NaN	NaN	NaN	0.078597	1	10416	10416		38.918	12.803	1	40376			29107	5855	16787	17258	23237	23237					0.04391832454007272
VPGAAERL	8	Unmodified	_VPGAAERL_					0	0	0			REV__ENSG00000105647|ENST00000222254|PIK3R2	REV__ENSG00000105647|ENST00000222254|PIK3R2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.462478325	1	812.462478	811.455202	1.085	0.00088154	-8.9479	-0.0072698	-7.8628	-0.0063883	812.454467233771	33.189	0.12067	33.186	33.138	33.259	-0.0024796	435	61	1.360811	0.03578186	1.3592916	277.15915	0	7.2877502						211	6	3	NaN	NaN	NaN	0.77489	1	4813	4813		12.588	1.9829	1	34659	+		29108	8968	16788	17259	23238	23238					0.04193246554507368
VPGAAERL	8	Unmodified						0	0	0			REV__ENSG00000105647|ENST00000222254|PIK3R2	REV__ENSG00000105647|ENST00000222254|PIK3R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	812.462478	811.455202	1.3716	0.0011144	-9.1037	-0.0073964	-7.7321	-0.006282	812.4553886725099	33.19	0.19306	33.19	33.142	33.335	0	438	73	1.359022	0.042942762	1.359022	276.79477		8.746216	0.0019056	-4.7462E-05	-0.00013478	NaN	12.588	276	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40184	+		29109	8968	16788	17259							0.04193246554507368
VPGAAERL	8	Unmodified						0	0	0			REV__ENSG00000105647|ENST00000222254|PIK3R2	REV__ENSG00000105647|ENST00000222254|PIK3R2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	812.462478	811.455202	1.085	0.00088154	-8.9479	-0.0072698	-7.8628	-0.0063883	812.454467233771	33.189	0.12067	33.186	33.138	33.259	-0.0024796	435	61	1.360811	0.03578186	1.3592916	277.15915		7.2877502	-0.0019056	7.9125E-05	0.00013478	NaN	12.588	211	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34659	+		29110	8968	16788	17259							0.04193246554507368
VPGAGAGA	8	Unmodified	_VPGAGAGA_					0	0	0		TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	300.16101396095	2	300.161014	598.307475	1.4161	0.00042506	5.2574	0.0015781	6.6735	0.0020031	300.16265277509916	40.054	0.096264	40.06	40.036	40.132	0.0060463	1515	43	0.7042165	0.026033461	0.70269704	288.54272	0	10.66687						90	5	2	NaN	NaN	NaN	0.84876	1	577	577		0.39566	0	1	16890			29111	916	16789	17260	23239	23239					-0.007746449794694854
VPGAGAGA	8	Unmodified						0	0	0		TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	TCF7|p.K242Gfs*12|1|0.09|ENSG00000081059|chr5:134142269-134142270|-/GG|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	300.161014	598.307475	0.93933	0.00028195	5.581	0.0016752	6.5203	0.0019571	300.1626090692205	40.008	0.12029	40.008	39.935	40.056	0	1518	46	0.7023569	0.027894557	0.7023569	287.78076		11.429413	-0.026095	0.00013628	-0.0001701	NaN	0.39566	147	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19597			29112	916	16789	17260							-0.007746449794694854
VPGAGVPG	8	Unmodified	_VPGAGVPG_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479001	1	653.361702	652.354425	0.63427	0.00041441	-0.40396	-0.00026393	0.23031	0.00015048	653.3619426487116	39.668	0.096466	39.673	39.673	39.77	0.0053368	777	73	1.1556307	0.043445826	1.1541113	236.32286	0	8.8845215						201	5	3	NaN	NaN	NaN	0.84876	1	2045	2045		0.39566	0	1	26428			29113	566	16790	17261	23240	23240					0.014342145716682353
VPGAKKHI	8	Unmodified	_VPGAKKHI_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.26888738865006	2	425.268887	848.523222	1.5078	0.00064123	0.016934	7.2015E-06	1.5248	0.00064843	425.26875162021827	56.037	0.04797	56.037	56.013	56.061	0	1281	34	0.84864825	0.020283759	0.84864825	345.4338	0	8.256317						50	3	2	NaN	NaN	NaN	0.84876	1	5369	5369		0.39566	0	1	6437.4	+	+	29114	13001;11047	16791	17262	23241	23241					0.09290116205181675
VPGAKKHI	8	Unmodified						0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	425.268887	848.523222	1.5078	0.00064123	0.016934	7.2015E-06	1.5248	0.00064843	425.26875162021827	56.037	0.04797	56.037	56.013	56.061	0	1281	34	0.84864825	0.020283759	0.84864825	345.4338		8.256317	0.0013334	-0.0012822	-0.00016217	NaN	0.39566	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6437.4	+	+	29115	13001;11047	16791	17262							0.09290116205181675
VPGAKKHI	8	Unmodified						0	0	0			REV__ENSG00000188107|ENST00000503581|EYS;REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	425.268887	848.523222	-0.61814	-0.00026288	3.2424	0.0013789	2.6243	0.001116	425.2700003467111	56.035	0.047977	56.034	56.01	56.058	-0.00059128	1278	40	0.85049206	0.02396655	0.8489726	346.18427		9.755341	-0.0013334	0.0014612	0.00016217	NaN	0.39566	59	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9074.6	+	+	29116	13001;11047	16791	17262							0.09290116205181675
VPGALGGLW	9	Unmodified	_VPGALGGLW_					0	0	0			REV__ENSG00000197403|ENST00000641846|OR6N1	REV__ENSG00000197403|ENST00000641846|OR6N1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	869.487964794	1	869.487965	868.480688	0.88892	0.0007729	7.5654	0.006578	8.4543	0.0073509	869.494377514353	27.59	0.28958	27.581	27.388	27.677	-0.009552	447	55	1.3536539	0.032213926	1.3521345	275.39987	0	6.553894						238	13	2	NaN	NaN	NaN	0.65388	1	5506	5506		3.1533	0	1	18302	+		29117	11144	16792	17263	23242	23242					0.04118721076940801
VPGEILEL	8	Unmodified	_VPGEILEL_					0	0	0		tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	tr|U7T655|U7T655_FUSNUDNApolymerasebacteriophage-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00113PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	435.2525686224499	2	435.252569	868.490584	1.4374	0.00062564	8.4713	0.0036872	9.9087	0.0043128	435.2556129291094	22.187	0.072369	22.173	22.173	22.246	-0.013731	1371	34	0.79324204	0.020349741	0.7917226	322.7631	0	8.280121						52	4	2	NaN	NaN	NaN	0.80071	1	5508	5508		9.1232	3.0329	1	3737.2			29118	13998	16793	17264	23243	23243					0.05107864291653641
VPGGEGGG	8	Unmodified	_VPGGEGGG_					0	0	0		ENST00000371224.6_1_10:97413130-97416456:-|nuORF	ENST00000371224.6_1_10:97413130-97416456:-|nuORF	ENST00000371224.6_1_10:97413130-97416456:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.2889306353002	1	629.288931	628.281654	2.5302	0.0015922	5.3951	0.0033951	7.9252	0.0049873	629.2922874993857	22.259	0.024132	22.246	22.246	22.27	-0.013731	1128	37	0.9424274	0.02200979	0.94090796	192.87492	0	4.5044556						32	2	2	NaN	NaN	NaN	0.84945	1	1280	1280		0	0	1	1672.9			29119	6656	16794	17265	23244	23244					-0.04735539221746876
VPGGPAAC	8	Unmodified	_VPGGPAAC_					0	0	0			REV__nc|ENSG00000079432|Q96RK0-2|CIC	REV__nc|ENSG00000079432|Q96RK0-2|CIC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.3181222736999	1	671.318122	670.310846	1.0526	0.00070662	-3.781	-0.0025382	-2.7284	-0.0018316	671.3155694221053	32.248	0.072395	32.244	32.196	32.268	-0.0037613	738	49	1.179155	0.02893591	1.1776356	241.00092	0	5.9140625						66	4	2	NaN	NaN	NaN	0.84945	1	2516	2516		0	0	1	5293.6	+		29120	8642	16795	17266	23245	23245					-0.03749718197138918
VPGGPGQF	8	Unmodified	_VPGGPGQF_					0	0	0		ENST00000589644.1_1_19:38799520-38799736:-|nuORF	ENST00000589644.1_1_19:38799520-38799736:-|nuORF	ENST00000589644.1_1_19:38799520-38799736:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.3831653715	1	758.383165	757.375889	1.0119	0.0007674	7.0288	0.0053305	8.0407	0.0060979	758.3883512524087	33.671	0.12064	33.67	33.645	33.766	-0.0018463	546	46	1.294491	0.026943803	1.2929716	263.9647	0	5.494232						99	6	2	NaN	NaN	NaN	0.79379	1	4109	4109		10.052	0	1	8228.2			29121	7722	16796	17267	23246	23246					-0.012504003996241408
VPGGPGQF	8	Unmodified						0	0	0		ENST00000589644.1_1_19:38799520-38799736:-|nuORF	ENST00000589644.1_1_19:38799520-38799736:-|nuORF	ENST00000589644.1_1_19:38799520-38799736:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	758.383165	757.375889	0.82787	0.00062784	6.6223	0.0050223	7.4502	0.0056501	758.388600254496	33.673	0.12067	33.673	33.648	33.769	0	552	49	1.2908988	0.028741598	1.2908988	263.23218		5.86084	0.0015518	-0.00013638	-0.0010364	NaN	10.052	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9473.2			29122	7722	16796	17267							-0.012504003996241408
VPGGSHAG	8	Unmodified	_VPGGSHAG_					0	0	0		KRT28|p.V253*|1|0.08|ENSG00000173908|chr17:40797215-40797215|C/-|frameshift_variant;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	KRT28|p.V253*|1|0.08|ENSG00000173908|chr17:40797215-40797215|C/-|frameshift_variant	KRT28|p.V253*|1|0.08|ENSG00000173908|chr17:40797215-40797215|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.3314641520001	1	681.331464	680.324188	1.663	0.0011331	-5.9839	-0.004077	-4.3209	-0.002944	681.327309261408	19.372	0.23996	19.372	19.252	19.492	0	717	55	1.1918083	0.032521605	1.1918083	243.51537	0	6.644943						184	11	2	NaN	NaN	NaN	0.84207	1	2850	2850		3.5732	0.41988	1	13627		+	29123	221	16797	17268	23247	23247					-0.028761440935227256
VPGGVGEG	8	Unmodified	_VPGGVGEG_					0	0	0		ENST00000474806.1_1_1:93250535-93250604:-|nuORF	ENST00000474806.1_1_1:93250535-93250604:-|nuORF	ENST00000474806.1_1_1:93250535-93250604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3358808279002	1	671.335881	670.328604	1.8614	0.0012496	7.7353	0.005193	9.5966	0.0064426	671.3409365950114	29.811	0.12067	29.811	29.739	29.86	0	1302	22	0.8357362	0.012916207	0.8357362	170.81133	0	2.639862						41	6	2	NaN	NaN	NaN	0.84876	1	2606	2606		0.39566	0	1	2119.9			29124	7172	16798	17269	23248	23248					-0.019746796706044734
VPGKAALA	8	Unmodified	_VPGKAALA_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.4508510061999	1	726.450851	725.443575	1.2889	0.00093635	-1.7477	-0.0012696	-0.4588	-0.0003333	726.449376655391	29.136	0.04825	29.136	29.112	29.16	0	651	37	1.2315145	0.021632433	1.2315145	251.31947	0	4.4145966						53	3	2	NaN	NaN	NaN	0.84945	1	3699	3699		0	0	1	4079	+		29125	11369	16799	17270	23249	23249					0.06987049531164757
VPGKAALA	8	Unmodified	_VPGKAALA_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.4508510061999	1	726.450851	725.443575	1.1092	0.00080581	-3.0509	-0.0022163	-1.9417	-0.0014105	726.4485440829912	26.939	0.21725	26.928	26.904	27.121	-0.010645	648	52	1.2333171	0.03064096	1.2317977	251.68733	0	6.253006						164	10	2	NaN	NaN	NaN	0.84945	1	3615	3615		0	0	1	14965	+		29126	11369	16799	17270	23250	23250					0.06987049531164757
VPGKAALAL	9	Unmodified	_VPGKAALAL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.5349149865998	1	839.534915	838.527639	1.7856	0.0014991	-1.9183	-0.0016105	-0.13273	-0.00011143	839.5324136410898	58.797	0.048023	58.797	58.797	58.845	0	372	43	1.3983358	0.024988651	1.3983358	284.6488	0	5.0867615						75	3	3	NaN	NaN	NaN	0.6907	1	5255	5255		0	0	1	6601.8	+		29127	11369	16800	17271	23251	23251					0.10191580628054453
VPGKAALAL	9	Unmodified						0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	839.534915	838.527639	1.7856	0.0014991	-1.9183	-0.0016105	-0.13273	-0.00011143	839.5324136410898	58.797	0.048023	58.797	58.797	58.845	0	372	43	1.3983358	0.024988651	1.3983358	284.6488		5.0867615	-0.010669	-0.00071066	-0.001025	NaN	0	75	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6601.8	+		29128	11369	16800	17271							0.10191580628054453
VPGKPAAP	8	Unmodified	_VPGKPAAP_					0	0	0		nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	368.72123870429994	2	368.721239	735.427924	1.5163	0.00055909	-7.1782	-0.0026467	-5.6619	-0.0020877	368.7183022231276	28.049	0.072409	28.04	27.992	28.064	-0.0089779	1368	55	0.7950918	0.0332942	0.79357237	324.42456	0	13.585144						90	4	2	NaN	NaN	NaN	0.84945	1	3760	3760		0	0	1	7005.5			29129	5418	16801	17272	23252	23252					0.04962763014123084
VPGKPAAP	8	Unmodified	_VPGKPAAP_					0	0	0		nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.4352009419999	1	736.435201	735.427924	1.455	0.0010715	-4.8221	-0.0035512	-3.3672	-0.0024797	736.4308360888139	27.06	0.072407	27.049	27.025	27.098	-0.010126	654	43	1.2297117	0.02524054	1.2281922	250.88841	0	5.1496124						77	4	2	NaN	NaN	NaN	0.84945	1	3761	3761		0	0	1	7168.1			29130	5418	16801	17272	23253	23253					0.04962763014123084
VPGKPAAP	8	Unmodified	_VPGKPAAP_					0	0	0		nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	nc|ENSG00000185504|Q0VG06-3|FAAP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	736.4352009419999	1	736.435201	735.427924	1.402	0.0010325	-4.3877	-0.0032313	-2.9857	-0.0021988	736.4317088358166	28.966	0.24132	28.958	28.91	29.151	-0.0077229	660	37	1.2261056	0.021637082	1.2245861	250.15266	0	4.4144287						112	11	2	NaN	NaN	NaN	0.84945	1	3762	3762		0	0	1	8427.8			29131	5418	16801	17272	23254	23254					0.04962763014123084
VPGKPGRV	8	Unmodified	_VPGKPGRV_					0	0	0		ENSG00000143942|ENST00000295304|CHAC2	ENSG00000143942|ENST00000295304|CHAC2	ENSG00000143942|ENST00000295304|CHAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	405.25323732445	2	405.253237	808.491922	1.421	0.00057586	2.3639	0.00095796	3.7848	0.0015338	405.2540940360749	17.069	0.096085	17.069	17.045	17.141	0	1518	55	0.7023569	0.033471584	0.7023569	286.11237	0	13.63501						123	5	2	NaN	NaN	NaN	0.8439	1	4873	4873		3.1533	0	1	13124			29132	3456	16802	17273	23255	23255					0.08001543171087633
VPGPDGKG	8	Unmodified	_VPGPDGKG_					0	0	0		ENSG00000177374|ENST00000619757|HIC1;nc|ENSG00000177374|Q14526|HIC1	ENSG00000177374|ENST00000619757|HIC1	ENSG00000177374|ENST00000619757|HIC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3780799936002	1	726.37808	725.370804	1.1193	0.00081306	5.6198	0.0040821	6.7392	0.0048952	726.3819424421353	26.891	0.16889	26.891	26.843	27.012	0	609	70	1.2567334	0.04140663	1.2567334	256.46643	0	8.450027						216	8	3	NaN	NaN	NaN	0.82797	1	3694	3694		5.4659	0	1	30259			29133	5074	16803	17274	23256	23256					-0.002867042622256122
VPGPPCGG	8	Unmodified	_VPGPPCGG_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.16269937015005	2	342.162699	682.310846	1.7559	0.00060081	7.2483	0.0024801	9.0042	0.0030809	342.1653220717629	28.46	0.19311	28.46	28.412	28.605	0	1503	46	0.711653	0.027885437	0.711653	290.79074	0	11.394348						147	9	3	NaN	NaN	NaN	0.84876	1	2887	2887		0.39566	0	1	16684	+		29134	12093	16804	17275	23257	23257					-0.04301718197109494
VPGPTGPA	8	Unmodified	_VPGPTGPA_					0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.3722663342	1	695.372266	694.36499	1.1172	0.00077687	6.9689	0.004846	8.0861	0.0056228	695.3773356998893	27.157	0.19309	27.157	27.036	27.229	0	636	52	1.2405256	0.030631065	1.2405256	253.36832	0	6.25618						172	9	2	NaN	NaN	NaN	0.84651	1	3135	3135		1.6704	0	1	14138	+		29135	11231	16805	17276	23258	23258					0.005581972260984003
VPGPTGPA	8	Unmodified						0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	695.372266	694.36499	1.1172	0.00077687	6.9689	0.004846	8.0861	0.0056228	695.3773356998893	27.157	0.19309	27.157	27.036	27.229	0	636	52	1.2405256	0.030631065	1.2405256	253.36832		6.25618	-0.042832	-0.0001152	0.00075972	NaN	1.6704	172	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14138	+		29136	11231	16805	17276							0.005581972260984003
VPGPTGPA	8	Unmodified						0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	695.372266	694.36499	0.99015	0.00068852	7.4419	0.0051749	8.4321	0.0058634	695.3771807344107	27.253	0.1931	27.242	27.218	27.411	-0.010126	636	40	1.2405256	0.023423791	1.2390062	253.36832		4.784149	0.042832	0.00021373	-0.00075972	NaN	1.6704	121	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7640.1	+		29137	11231	16805	17276							0.005581972260984003
VPGTDFSL	8	Unmodified	_VPGTDFSL_					0	0	0		ENST00000498841.5_1_21:45739892-45744801:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF;ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45741509-45744801:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF	ENST00000498841.5_1_21:45739892-45744801:+|nuORF	ENST00000498841.5_1_21:45739892-45744801:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	835.4196104573001	1	835.41961	834.412334	2.0066	0.0016764	0.63517	0.00053063	2.6418	0.002207	835.4203832822752	25.756	0.12064	25.745	25.672	25.793	-0.0116	450	58	1.3518641	0.034019947	1.3503447	275.21075	0	6.92572						135	6	3	NaN	NaN	NaN	0.35353	1	5068	5068		38.918	8.1267	1	8170.8			29138	3348	16806	17277	23259	23259					-0.011495682935674267
VPGVGKPT	8	Unmodified	_VPGVGKPT_					0	0	0			REV__ENSG00000180185|ENST00000427358|FAHD1	REV__ENSG00000180185|ENST00000427358|FAHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.4457656282999	1	754.445766	753.438489	1.2789	0.00096487	-2.6232	-0.0019791	-1.3443	-0.0010142	754.4435323793515	29.883	0.14476	29.876	29.828	29.972	-0.0070667	603	52	1.2603331	0.030591846	1.2588136	257.02332	0	6.238678						117	7	2	NaN	NaN	NaN	0.84876	1	4046	4046		0.39566	0	1	14959	+		29139	10825	16807	17278	23260	23260					0.05190745668551244
VPGVPSSG	8	Unmodified	_VPGVPSSG_					0	0	0		ENST00000590891.1_1_16:4660442-4660589:-|nuORF	ENST00000590891.1_1_16:4660442-4660589:-|nuORF	ENST00000590891.1_1_16:4660442-4660589:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3671809563001	1	699.367181	698.359904	1.6827	0.0011768	5.9267	0.0041449	7.6094	0.0053218	699.3713144498013	25.998	0.16895	25.987	25.962	26.131	-0.011137	669	55	1.2206948	0.03247285	1.2191753	249.29045	0	6.6316223						180	8	3	NaN	NaN	NaN	0.84207	1	3131	3131		3.5732	0.41988	1	19304			29140	7726	16808	17279	23261	23261					-0.001341066365171173
VPHDLQLL	8	Unmodified	_VPHDLQLL_					0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.7714598673501	2	467.77146	933.528367	1.3063	0.00061104	-1.4227	-0.00066548	-0.11638	-5.4441E-05	467.77110567536084	25.25	0.096544	25.25	25.202	25.298	0	1356	64	0.8024889	0.03880751	0.8024889	326.17157	0	15.773285						115	5	2	NaN	NaN	NaN	0.57691	1	6696	6696		26.732	1.7706	1	11356	+		29141	11021	16809	17280	23262	23262					0.05894375277148356
VPHDLQLL	8	Unmodified						0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	467.77146	933.528367	1.3063	0.00061104	-1.4227	-0.00066548	-0.11638	-5.4441E-05	467.77110567536084	25.25	0.096544	25.25	25.202	25.298	0	1356	64	0.8024889	0.03880751	0.8024889	326.17157		15.773285	-0.0059383	0.00038834	-0.00016467	NaN	26.732	115	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11356	+		29142	11021	16809	17280							0.05894375277148356
VPHDLQLL	8	Unmodified						0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	467.77146	933.528367	0.82031	0.00038372	-2.2579	-0.0010562	-1.4376	-0.00067248	467.77032741547146	25.274	0.21707	25.262	25.214	25.431	-0.012011	1353	61	0.8043377	0.036957502	0.80281824	326.923		15.021393	0.0059383	-0.0003931	0.00016467	NaN	26.732	175	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14902	+		29143	11021	16809	17280							0.05894375277148356
VPHGGAAA	8	Unmodified	_VPHGGAAA_					0	0	0		nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-2|ZXDC	nc|ENSG00000070476|Q2QGD7-2|ZXDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.3521995941	1	679.3522	678.344923	1.3341	0.00090631	-4.852	-0.0032962	-3.5179	-0.0023899	679.3489111710608	30.463	0.12066	30.463	30.439	30.56	0	636	103	1.2405256	0.06125903	1.2405256	253.48404	0	12.517426						235	6	2	NaN	NaN	NaN	0.84651	1	2800	2800		1.6704	0	1	29044			29144	762	16810	17281	23263	23263					-0.007115537138702166
VPHGSYVE	8	Unmodified	_VPHGSYVE_					0	0	0			REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.21651746714997	2	444.216517	886.418482	1.0888	0.00048365	-1.0479	-0.00046549	0.040887	1.8162E-05	444.21625638527655	22.548	0.14472	22.535	22.511	22.655	-0.01354	1296	49	0.8394264	0.02951163	0.83790696	341.4477	0	12.004242						122	7	2	NaN	NaN	NaN	0.84876	1	5766	5766		0.39566	0	1	10866	+		29145	10716	16811	17282	23264	23264					-0.02927050062055514
VPIEEAGSM	9	Unmodified	_VPIEEAGSM_					0	0	0		ENST00000468403.1_1_1:153747811-153748660:+|nuORF	ENST00000468403.1_1_1:153747811-153748660:+|nuORF	ENST00000468403.1_1_1:153747811-153748660:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	932.4393596214002	1	932.43936	931.432083	2.3347	0.002177	-1.3534	-0.0012619	0.98138	0.00091508	932.43803177173	19.9	0.048035	19.885	19.861	19.909	-0.014141	402	40	1.3804773	0.023227215	1.3789579	280.56104	0	4.720581						46	3	2	NaN	NaN	NaN	0.14301	1	6488	6488		29.598	14.423	1	2853.5			29146	7131	16812	17283	23265	23265					-0.0363756034510061
VPIFTEEFL	9	Unmodified	_VPIFTEEFL_					0	0	0		nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5768393807998	1	1094.57684	1093.56956	0.81646	0.00089368	-0.0658	-7.2023E-05	0.75066	0.00082166	1094.5772982173853	33.671	0.16891	33.67	33.621	33.79	-0.0018463	72	73	1.5758814	0.0423944	1.5743619	319.58133	0	8.597382						256	8	3	NaN	NaN	NaN	0.0047854	1	12239	12239		103.03	50.268	1	33394			29147	676	16813	17284	23266	23266					0.026520915259425237
VPIFTEEFL	9	Unmodified						0	0	0		nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	nc|ENSG00000064961|Q9P0W2-2|HMG20B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1094.57684	1093.56956	1.2626	0.001382	-0.36832	-0.00040316	0.89426	0.00097884	1094.576531219141	33.673	0.14484	33.673	33.6	33.745	0	75	79	1.5741152	0.045932055	1.5741152	319.22314		9.314819	0.0015518	-0.00011969	-0.00012336	NaN	103.03	238	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35412			29148	676	16813	17284							0.026520915259425237
VPIGTEIDL	9	Unmodified	_VPIGTEIDL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	956.5298891882002	1	956.529889	955.522613	1.2894	0.0012334	-1.6896	-0.0016161	-0.40018	-0.00038279	956.529626594392	27.35	0.14483	27.35	27.302	27.446	0	276	55	1.4553556	0.032022476	1.4553556	295.67026	0	6.505707						193	7	3	NaN	NaN	NaN	0.032764	1	7228	7228		55.494	23.933	1	17059			29149	952	16814	17285	23267	23267					0.04307231974826209
VPIGTEIDL	9	Unmodified	_VPIGTEIDL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	956.5298891882002	1	956.529889	955.522613	1.2968	0.0012404	-0.52852	-0.00050554	0.76828	0.00073488	956.5307838829249	27.373	0.12067	27.363	27.315	27.436	-0.010126	276	55	1.4553556	0.032022476	1.4538362	295.67026	0	6.505707						186	6	3	NaN	NaN	NaN	0.10956	1	7089	7089		34.439	4.8405	1	16344			29150	952	16814	17285	23268	23268					0.04307231974826209
VPIKEIVEM	9	Unmodified	_VPIKEIVEM_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.3017355405	2	529.301736	1056.58892	1.9974	0.0010572	-2.636	-0.0013953	-0.63866	-0.00033804	529.3014204556455	23.055	0.12032	23.055	23.007	23.128	0	1269	43	0.8560222	0.025803149	0.8560222	347.34174	0	10.46994						112	6	3	NaN	NaN	NaN	0.41527	1	10954	10954		13.101	0.098334	1	16605			29151	690	16815	17286	23269	23269					0.0628872454519751
VPILFEETF	9	Unmodified	_VPILFEETF_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5768393807998	1	1094.57684	1093.56956	1.2349	0.0013517	0.47197	0.0005166	1.7069	0.0018683	1094.5769232944133	33.359	0.072407	33.359	33.335	33.407	0	90	61	1.5652816	0.035351038	1.5652816	317.43176	0	7.169037						101	4	2	NaN	NaN	NaN	0.049695	1	12563	12563		47.04	20.925	1	11625			29152	1515	16816	17287	23270	23270					0.026520915259425237
VPILFEETF	9	Unmodified						0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1094.57684	1093.56956	0.94104	0.00103	-1.065	-0.0011657	-0.12392	-0.00013564	1094.577049760663	33.358	0.096508	33.355	33.307	33.403	-0.0024796	90	61	1.5652816	0.035347342	1.5637622	317.43176		7.168274	-0.0019127	-0.00067968	-0.00075972	NaN	47.04	114	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12546			29153	1515	16816	17287							0.026520915259425237
VPILSEEEL	9	Unmodified	_VPILSEEEL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5510185608	1	1028.55102	1027.54374	1.7383	0.001788	-0.70925	-0.0007295	1.0291	0.0010585	1028.5505998112278	27.109	0.12068	27.109	27.084	27.205	0	231	130	1.4820169	0.07635629	1.4820169	300.7867	0	15.497101						369	6	4	NaN	NaN	NaN	3.1345E-12	1	9682	9682		151.07	54.825	1	78146			29154	2938	16817	17288	23271	23271					0.031071972836798523
VPILSEEEL	9	Unmodified	_VPILSEEEL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5510185608	1	1028.55102	1027.54374	1.2179	0.0012527	-0.72495	-0.00074565	0.49296	0.00050704	1028.5498910573367	27.132	0.12066	27.122	27.074	27.194	-0.010126	228	121	1.4837929	0.07099521	1.4822735	301.14713	0	14.408997						363	6	4	NaN	NaN	NaN	0.021105	1	9492	9492		70.6	26.297	1	68661			29155	2938	16817	17288	23272	23272					0.031071972836798523
VPIMLGGV	8	Unmodified	_VPIMLGGV_					0	0	0			REV__SATB2|p.E352Rfs*20|1|0.27|ENSG00000119042|chr2:199348820-199348821|-/T|frameshift_variant	REV__SATB2|p.E352Rfs*20|1|0.27|ENSG00000119042|chr2:199348820-199348821|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4589728515002	1	785.458973	784.451696	0.45294	0.00035577	8.5958	0.0067517	9.0488	0.0071075	785.4653781028242	56.947	0.023991	56.946	56.922	56.946	-0.00056458	489	46	1.3285799	0.026889324	1.3270605	270.74948	0	5.4797363						49	2	2	NaN	NaN	NaN	0.84876	1	4473	4473		0.39566	0	1	3526.7	+		29156	9281	16818	17289	23273	23273					0.050848604563157096
VPINVVETL	9	Unmodified	_VPINVVETL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	983.5771737318001	1	983.577174	982.569897	2.563	0.0025209	-0.16609	-0.00016336	2.3969	0.0023575	983.5771637552316	28.001	0.16892	28.001	27.953	28.122	0	258	196	1.4660252	0.11574173	1.4660252	297.72137	0	23.504883						770	8	5	NaN	NaN	NaN	0.0028258	1	7982	7982		108.53	44.573	1	498080			29157	1228	16819	17290	23274	23274					0.07791511245807214
VPINVVETL	9	Unmodified	_VPINVVETL_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	983.5771737318001	1	983.577174	982.569897	2.0312	0.0019978	0.22515	0.00022145	2.2563	0.0022193	983.5775992922203	28.001	0.26549	27.992	27.943	28.209	-0.0089798	255	187	1.4678029	0.110358715	1.4662834	298.08237	0	22.411713						850	12	5	NaN	NaN	NaN	0.0028258	1	7810	7810		108.53	30.242	1	528970			29158	1228	16819	17290	23275	23275					0.07791511245807214
VPIQDTFPFL	10	Unmodified	_VPIQDTFPFL_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8186070252001	2	588.818607	1175.62266	0.96269	0.00056685	-2.3948	-0.0014101	-1.4321	-0.00084327	588.8170641844266	35.506	0.21708	35.506	35.434	35.651	0	1179	64	0.9112251	0.038594007	0.9112251	369.25894	0	15.639587						265	10	4	NaN	NaN	NaN	0.38071	1	15673	15673		24.4	1.0658	1	36130			29159	2150	16820	17291	23276	23276					0.0418746930861289
VPIQSSVVL	9	Unmodified	_VPIQSSVVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-5|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	941.5666090455001	1	941.566609	940.559333	1.7439	0.001642	-0.31313	-0.00029483	1.4308	0.0013472	941.5666202084657	25.371	0.072393	25.371	25.346	25.419	0	246	73	1.4731345	0.042655945	1.4731345	299.34988	0	8.667938						153	4	3	NaN	NaN	NaN	0.097143	1	6834	6834		36.235	4.5594	1	15067			29160	3298	16821	17292	23277	23277					0.0866752859137705
VPIQSSVVL	9	Unmodified	_VPIQSSVVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-5|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	941.5666090455001	1	941.566609	940.559333	2.139	0.002014	0.40351	0.00037993	2.5425	0.002394	941.5671159151552	25.37	0.096489	25.358	25.334	25.431	-0.012011	243	79	1.4749115	0.04622042	1.473392	299.71097	0	9.392242						142	5	2	NaN	NaN	NaN	0.16939	1	6696	6696		27.296	14.293	1	16105			29161	3298	16821	17292	23278	23278					0.0866752859137705
VPITDQHIL	9	Unmodified	_VPITDQHIL_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2952991044001	2	518.295299	1034.57605	1.699	0.00088056	-1.0139	-0.00052551	0.68503	0.00035505	518.2948791230677	21.416	0.12036	21.416	21.368	21.488	0	1212	91	0.8910048	0.055220783	0.8910048	361.6353	0	22.412659						196	6	3	NaN	NaN	NaN	0.33202	1	9989	9989		16.858	5.688	1	36802			29162	4266	16822	17293	23279	23279					0.060140294773418645
VPITDQHIL	9	Unmodified	_VPITDQHIL_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.2952991044001	2	518.295299	1034.57605	1.3721	0.00071115	-0.89799	-0.00046543	0.4741	0.00024572	518.2945749661206	21.44	0.12042	21.426	21.378	21.499	-0.014006	1209	43	0.892844	0.025747418	0.8913246	362.3818	0	10.450195						144	6	3	NaN	NaN	NaN	0.052553	1	9779	9779		45.827	15.035	1	29966			29163	4266	16822	17293	23280	23280					0.060140294773418645
VPKPVPRT	8	Unmodified	_VPKPVPRT_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.28199476390006	2	447.281995	892.549437	1.1644	0.00052083	0.6294	0.00028152	1.7938	0.00080235	447.2821605797301	56.061	0.07206	56.061	56.037	56.109	0	1236	40	0.876284	0.023932874	0.876284	356.40268	0	9.733978						100	4	4	NaN	NaN	NaN	0.84897	1	5963	5963		0.27539	0	1	17850	+		29164	10056	16823	17294	23281	23281					0.098863853766602
VPLCHCLA	8	Unmodified	_VPLCHCLA_					0	0	0			REV__ENSG00000168090|ENST00000303904|COPS6	REV__ENSG00000168090|ENST00000303904|COPS6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	855.4215414876999	1	855.421541	854.414265	1.9019	0.0016269	-2.0515	-0.0017549	-0.14962	-0.00012799	855.4204150239015	22.236	0.072327	22.236	22.187	22.26	0	1302	49	0.8357362	0.029530823	0.8357362	170.07356	0	6.009552						98	4	2	NaN	NaN	NaN	0.84945	1	5456	5456		0	0	1	10303	+		29165	10496	16824	17295	23282	23282					-0.018765540809908998
VPLEEVVL	8	Unmodified	_VPLEEVVL_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	897.5291609067002	1	897.529161	896.521884	1.595	0.0014315	-0.76379	-0.00068552	0.8312	0.00074603	897.5295101739349	28.918	0.072422	28.918	28.894	28.967	0	312	82	1.433996	0.048133373	1.433996	291.60315	0	9.787933						91	4	2	NaN	NaN	NaN	0.80692	1	6014	6014		8.2903	0	1	5987.6	+		29166	10114	16825	17296	23283	23283					0.06948437325775103
VPLEEVVL	8	Unmodified						0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	897.529161	896.521884	1.5744	0.0014131	0.11223	0.00010073	1.6867	0.0015138	897.5299551271798	28.918	0.072426	28.909	28.885	28.958	-0.0083504	315	52	1.4322147	0.030286908	1.4306953	291.24094		6.158844	-0.0045493	0.00041995	-0.0016503	NaN	8.2903	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4972.3	+		29167	10114	16825	17296							0.06948437325775103
VPLIEFIPPL	10	Unmodified	_VPLIEFIPPL_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-3|XRRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3495430128501	2	569.349543	1136.68453	1.9895	0.0011327	-2.72	-0.0015486	-0.7305	-0.00041591	569.3478580693761	43.393	0.071911	43.393	43.369	43.441	0	1161	19	0.9222442	0.011014402	0.9222442	373.8727	0	4.465149						28	4	2	NaN	NaN	NaN	0.66268	1	14354	14354		10.605	0.85897	1	1289.7	+		29168	10433	16826	17297	23284	23284					0.12165820727750543
VPLLPLTP	8	Unmodified	_VPLLPLTP_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	849.5444170403999	1	849.544417	848.537141	1.8142	0.0015412	-4.1776	-0.003549	-2.3634	-0.0020078	849.5407429573031	55.196	0.09626	55.196	55.172	55.268	0	375	64	1.3965509	0.03749287	1.3965509	284.23135	0	7.630707						126	5	3	NaN	NaN	NaN	0.84945	1	5370	5370		0	0	1	25030			29169	5036	16827	17298	23285	23285					0.10681348913601596
VPLLPLTP	8	Unmodified	_VPLLPLTP_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.5444170403999	1	849.544417	848.537141	-0.67989	-0.0005776	-1.3992	-0.0011887	-2.0791	-0.0017662	849.5431890422497	55.194	0.07217	55.193	55.169	55.242	-0.0006218	375	61	1.3965509	0.03570175	1.3950315	284.23135	0	7.2661743						123	4	3	NaN	NaN	NaN	0.84945	1	5237	5237		0	0	1	24240			29170	5036	16827	17298	23286	23286					0.10681348913601596
VPLLSSPV	8	Unmodified	_VPLLSSPV_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.4923814699001	1	811.492381	810.485105	0.48603	0.00039441	-3.6713	-0.0029792	-3.1853	-0.0025848	811.4891471031146	55.338	0.023949	55.338	55.314	55.338	-0.00061798	504	55	1.3196158	0.032275796	1.3180964	268.7742	0	6.5737915						45	2	2	NaN	NaN	NaN	0.84727	1	4801	4801		1.2418	0	1	3448.1			29171	5715	16828	17299	23287	23287					0.07228185499855044
VPLLSSVL	8	Unmodified	_VPLLSSVL_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.5236815983002	1	827.523682	826.516405	0.97827	0.00080954	0.37394	0.00030945	1.3522	0.001119	827.5239780610074	31.596	0.072432	31.592	31.568	31.64	-0.0044174	399	49	1.382264	0.028591871	1.3807446	281.44308	0	5.821594						73	4	2	NaN	NaN	NaN	0.15767	1	4985	4985		53.324	3.2911	1	5255.2			29172	1323	16829	17300	23288	23288					0.09620758533958451
VPLPKALL	8	Unmodified	_VPLPKALL_					0	0	0		TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	TSKU|p.E296K|1|0.13|ENSG00000182704|chr11:76796502-76796502|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.5760515198	1	850.576052	849.568775	-0.34688	-0.00029505	-0.66234	-0.00056337	-1.0092	-0.00085841	850.5751099505834	57.595	0.071999	57.594	57.546	57.618	-0.00051117	345	52	1.4143922	0.030315995	1.4128729	287.85693	0	6.1698914						74	4	2	NaN	NaN	NaN	0.84945	1	5253	5253		0	0	1	5909.6			29173	14015	16830	17301	23289	23289					0.13797341667554974
VPLSEPVTM	9	Unmodified	_VPLSEPVTM_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5070452561001	1	972.507045	971.499769	1.7242	0.0016768	-1.1407	-0.0011093	0.58347	0.00056743	972.5066429081438	24.044	0.096443	24.044	23.995	24.092	0	246	106	1.4731345	0.06224954	1.4731345	299.21228	0	12.643646						191	5	2	NaN	NaN	NaN	0.026295	1	7651	7651		63.958	41.832	1	20683			29174	460	16831	17302	23290	23290					0.012878895856943018
VPLSEPVTM	9	Oxidation (M)	_VPLSEPVTM(Oxidation (M))_		VPLSEPVTM(1)		VPLSEPVTM(87)	0	0	1		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.5019598782002	1	988.50196	987.494683	2.2424	0.0022166	-4.3185	-0.0042688	-2.0761	-0.0020522	988.4960276902824	19.9	0.14428	19.9	19.828	19.972	0	261	94	1.4642475	0.05514109	1.4642475	297.33984	0	11.197327						215	7	3	NaN	NaN	NaN	0.011942	1	8117	8117		87.021	50.434	1	20435			29175	460	16831	17303	23291	23291		41			0.0004358572308547082
VPLSEPVTM	9	Oxidation (M)	_VPLSEPVTM(Oxidation (M))_		VPLSEPVTM(1)		VPLSEPVTM(120)	0	0	1		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	988.5019598782002	1	988.50196	987.494683	1.7468	0.0017267	-3.7288	-0.0036859	-1.982	-0.0019592	988.4978736085844	19.9	0.096268	19.885	19.861	19.958	-0.014141	258	85	1.4660252	0.049802184	1.4645058	297.70084	0	10.113159						203	5	3	NaN	NaN	NaN	8.7755E-05	1	7957	7957		123.66	89.219	1	18931			29176	460	16831	17303	23292	23292		41			0.0004358572308547082
VPLSTEAAL	9	Unmodified	_VPLSTEAAL_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5036744376999	1	900.503674	899.496398	2.1723	0.0019562	-0.078112	-7.034E-05	2.0942	0.0018858	900.5041176015642	23.103	0.19275	23.103	23.031	23.224	0	372	67	1.3983358	0.03927195	1.3983358	284.33746	0	7.985565						244	9	3	NaN	NaN	NaN	0.01047	1	6059	6059		91.429	35.935	1	25199			29177	2740	16832	17304	23293	23293					0.0426296280331826
VPLSTEAAL	9	Unmodified	_VPLSTEAAL_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5036744376999	1	900.503674	899.496398	1.8465	0.0016628	-0.76754	-0.00069117	1.079	0.00097164	900.5034233027839	23.103	0.21694	23.09	23.017	23.234	-0.013294	369	67	1.4001206	0.03926778	1.3986012	284.70038	0	7.9847107						261	10	3	NaN	NaN	NaN	0.043119	1	5946	5946		49.833	0	1	26091			29178	2740	16832	17304	23294	23294					0.0426296280331826
VPLTVELL	8	Unmodified	_VPLTVELL_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.5498963488002	1	883.549896	882.54262	0.78731	0.00069563	-0.52597	-0.00046472	0.26134	0.00023091	883.5494029557376	33.43	0.096512	33.428	33.404	33.501	-0.0018501	339	76	1.4179583	0.044587016	1.4164388	288.41092	0	9.068939						183	5	3	NaN	NaN	NaN	0.15767	1	5718	5718		53.324	9.0768	1	19508	+		29179	10400	16833	17305	23295	23295					0.09665027705432294
VPLVAAGP	8	Unmodified	_VPLVAAGP_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4399519689	1	723.439952	722.432676	1.4665	0.0010609	-5.1034	-0.003692	-3.6369	-0.0026311	723.4363265775972	55.244	0.12025	55.244	55.196	55.316	0	651	70	1.2315145	0.04147315	1.2315145	251.3389	0	8.464233						163	6	3	NaN	NaN	NaN	0.84876	1	3650	3650		0.39566	0	1	28791			29180	517	16834	17306	23296	23296					0.06035647156897994
VPLVAAGP	8	Unmodified						0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	723.439952	722.432676	-0.50001	-0.00036173	-1.9149	-0.0013853	-2.4149	-0.0017471	723.438352048592	55.242	0.072189	55.242	55.217	55.29	-0.00061798	651	73	1.2315145	0.04324639	1.229995	251.33888		8.826096	-0.001402	0.0013535	-0.00075972	NaN	0.39566	131	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26181			29181	517	16834	17306							0.06035647156897994
VPMAYQIVL	9	Unmodified	_VPMAYQIVL_					0	0	0		nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	nc|ENSG00000130714|Q9Y6A1-3|POMT1	nc|ENSG00000130714|Q9Y6A1-3|POMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5750652417998	1	1033.57507	1032.56779	1.1	0.0011369	-0.79961	-0.00082646	0.30034	0.00031043	1033.5747323709747	30.849	0.12065	30.849	30.777	30.897	0	144	67	1.533442	0.038960457	1.533442	311.20377	0	7.9067993						186	6	3	NaN	NaN	NaN	0.062072	1	9896	9896		41.785	19.658	1	20642			29182	2663	16835	17307	23297	23297					0.05280759236325139
VPMAYQIVL	9	Unmodified						0	0	0		nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	nc|ENSG00000130714|Q9Y6A1-3|POMT1	nc|ENSG00000130714|Q9Y6A1-3|POMT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1033.57507	1032.56779	1.0926	0.0011293	-0.83681	-0.0008649	0.25577	0.00026436	1033.5749368862148	30.824	0.14478	30.818	30.746	30.891	-0.0057564	144	64	1.533442	0.03717959	1.5319226	311.20377		7.54541	-0.015499	-2.1511E-05	-0.00075972	NaN	41.785	182	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18677			29183	2663	16835	17307							0.05280759236325139
VPNEEDPSL	9	Unmodified	_VPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	999.462931835	1	999.462932	998.455655	2.0483	0.0020472	0.56605	0.00056574	2.6144	0.002613	999.463197216106	19.012	0.26388	19.012	18.94	19.204	0	282	58	1.4517976	0.03380692	1.4517976	294.7671	0	6.8640137						193	12	2	NaN	NaN	NaN	0.022082	1	8512	8512		69.363	34.067	1	14964			29184	1620	16836	17308	23298	23298					-0.043634233069496986
VPNEEDPSL	9	Unmodified	_VPNEEDPSL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.462931835	1	999.462932	998.455655	1.7932	0.0017922	-0.83628	-0.00083583	0.9569	0.00095639	999.4621568069012	19.058	0.19222	19.044	18.948	19.14	-0.014059	276	46	1.4553556	0.026686788	1.4538362	295.48953	0	5.418396						166	9	2	NaN	NaN	NaN	0.030545	1	8327	8327		58.398	25.945	1	13284			29185	1620	16836	17308	23299	23299					-0.043634233069496986
VPNEEDPSL	9	Unmodified						0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	999.462932	998.455655	2.1946	0.0021934	-0.15926	-0.00015918	2.0353	0.0020342	999.4634704033291	18.842	0.12014	18.828	18.78	18.9	-0.014059	273	43	1.4571344	0.024903774	1.4556149	295.85068		5.056366	-0.09237	-0.00045916	0.0019087	NaN	69.363	88	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5622.2			29186	1620	16836	17308							-0.043634233069496986
VPNFIFDEF	9	Unmodified	_VPNFIFDEF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.27403234605	2	564.274032	1126.53351	1.7945	0.0010126	-3.2495	-0.0018336	-1.455	-0.000821	564.2725985962418	34.638	0.12065	34.638	34.589	34.71	0	1248	61	0.8689189	0.03681785	0.8689189	352.29294	0	14.927338						175	6	3	NaN	NaN	NaN	0.44082	1	13956	13956		12.049	0.87837	1	16124			29187	4362	16837	17309	23300	23300					-0.02469365650904365
VPNFIFDEF	9	Unmodified	_VPNFIFDEF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.27403234605	2	564.274032	1126.53351	1.2187	0.00068769	-1.6924	-0.00095496	-0.47365	-0.00026727	564.2730140698378	34.636	0.12057	34.636	34.587	34.708	-0.0006485	1245	64	0.87076044	0.03865248	0.869241	353.03958	0	15.671204						130	6	3	NaN	NaN	NaN	0.35794	1	13514	13514		15.463	5.4111	1	12403			29188	4362	16837	17309	23301	23301					-0.02469365650904365
VPNLTKLH	8	Unmodified	_VPNLTKLH_					0	0	0			REV__SYT1|p.R200L|1|0.28|ENSG00000067715|chr12:79296193-79296193|G/T|missense_variant	REV__SYT1|p.R200L|1|0.28|ENSG00000067715|chr12:79296193-79296193|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	921.5516276833001	1	921.551628	920.544351	0.16855	0.00015532	0.57909	0.00053366	0.74764	0.00068899	921.5510661414662	51.947	0.095837	51.947	51.947	52.042	-9.9182E-05	342	37	1.4161754	0.02139604	1.4146559	287.86572	0	4.349182						55	5	2	NaN	NaN	NaN	0.84727	1	6302	6302		1.2418	0	1	3254.9	+		29189	13364	16838	17310	23302	23302					0.08090081514046688
VPNPDPVTM	9	Unmodified	_VPNPDPVTM_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.23913528369997	2	485.239135	968.463718	1.9498	0.00094611	1.5395	0.00074703	3.4893	0.0016931	485.23950931335423	21.681	0.04818	21.681	21.633	21.681	0	1365	52	0.7969414	0.031435966	0.7969414	323.74722	0	12.770447						51	3	2	NaN	NaN	NaN	0.27608	1	7558	7558		20.449	8.9002	1	3784.2			29190	4105	16839	17311	23303	23303					-0.021775675911726466
VPNPLPPP	8	Unmodified	_VPNPLPPP_					0	0	0		ENST00000258796.11_1_7:2701400-2702321:+|nuORF	ENST00000258796.11_1_7:2701400-2702321:+|nuORF	ENST00000258796.11_1_7:2701400-2702321:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.74217111164995	2	415.742171	829.469789	2.2372	0.00093011	1.6334	0.00067906	3.8706	0.0016092	415.742639816223	25.949	0.072386	25.938	25.914	25.986	-0.0116	1386	34	0.78399014	0.020360768	0.7824707	319.2319	0	8.29068						57	4	2	NaN	NaN	NaN	0.84651	1	5015	5015		1.6704	0	1	5435.4			29191	6293	16840	17312	23304	23304					0.04823318702653978
VPPGCAAC	8	Unmodified	_VPPGCAAC_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3058430279	1	717.305843	716.298567	1.3972	0.0010022	-5.2796	-0.0037871	-3.8824	-0.0027849	717.3018313487961	22.163	0.096506	22.163	22.139	22.236	0	1320	40	0.824661	0.024008036	0.824661	168.3313	0	4.9005737						103	5	3	NaN	NaN	NaN	0.84876	1	3535	3535		0.39566	0	1	10276			29192	6824	16841	17313	23305	23305					-0.0709307793182461
VPPGCAAC	8	Unmodified						0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	717.305843	716.298567	1.0621	0.00076183	-7.0477	-0.0050554	-5.9856	-0.0042935	717.3012618508703	22.187	0.096514	22.173	22.149	22.246	-0.013731	1320	49	0.824661	0.029549956	0.8231416	168.3313		6.0317993	0.0049893	-0.00077661	-0.00075972	NaN	0.39566	99	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10830			29193	6824	16841	17313							-0.0709307793182461
VPPGVAAL	8	Unmodified	_VPPGVAAL_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4399519688999	1	723.439952	722.432676	1.532	0.0011083	-3.2449	-0.0023475	-1.7129	-0.0012392	723.4385830957276	29.932	0.26552	29.932	29.836	30.101	0	648	37	1.2333171	0.021630168	1.2333171	251.70679	0	4.4144745						170	12	2	NaN	NaN	NaN	0.84876	1	3652	3652		0.39566	0	1	12379			29194	2058	16842	17314	23306	23306					0.060356471568866255
VPPLGGGG	8	Unmodified	_VPPLGGGG_					0	0	0		ENST00000327535.5_1_1:24483462-24483699:-|nuORF	ENST00000327535.5_1_1:24483462-24483699:-|nuORF	ENST00000327535.5_1_1:24483462-24483699:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016479002	1	653.361702	652.354425	0.76709	0.00050119	2.4093	0.0015741	3.1764	0.0020753	653.3631075584701	41.786	0.072182	41.786	41.738	41.811	0	768	58	1.1610622	0.034385324	1.1610622	237.4336	0	7.0316925						81	4	2	NaN	NaN	NaN	0.84876	1	2133	2133		0.39566	0	1	13153			29195	6497	16843	17315	23307	23307					0.01434214571679604
VPPLLIPL	8	Unmodified	_VPPLLIPL_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	861.5808025467	1	861.580803	860.573526	2.0334	0.0017519	-3.5657	-0.0030721	-1.5323	-0.0013202	861.5776990680262	58.773	0.023941	58.773	58.773	58.797	0	312	49	1.433996	0.028503776	1.433996	291.78723	0	5.7999268						50	2	2	NaN	NaN	NaN	0.84945	1	5541	5541		0	0	1	4785	+		29196	9910	16844	17316	23308	23308					0.1376622581032052
VPPLLIPL	8	Unmodified						0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	861.580803	860.573526	2.0334	0.0017519	-3.5657	-0.0030721	-1.5323	-0.0013202	861.5776990680262	58.773	0.023941	58.773	58.773	58.797	0	312	49	1.433996	0.028503776	1.433996	291.78723		5.7999268	-0.010657	-0.0013394	0.00075972	NaN	0	50	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4785	+		29197	9910	16844	17316							0.1376622581032052
VPPLPGGA	8	Unmodified	_VPPLPGGA_					0	0	0			REV__nc|ENSG00000135100|P20823-6|HNF1A	REV__nc|ENSG00000135100|P20823-6|HNF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.4086518405002	1	707.408652	706.401375	-0.46304	-0.00032756	9.0065	0.0063713	8.5435	0.0060437	707.4143535904271	53.336	0.11998	53.336	53.288	53.408	-0.00053406	651	40	1.2315145	0.023433924	1.229995	251.44498	0	4.784607						105	6	2	NaN	NaN	NaN	0.84945	1	3288	3288		0	0	1	6622.1	+		29198	9605	16845	17317	23309	23309					0.03643074122817325
VPPPAAAA	8	Unmodified	_VPPPAAAA_					0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.3930017762999	1	693.393002	692.385725	1.3437	0.0009317	-2.0567	-0.0014261	-0.71305	-0.00049442	693.3920360470929	29.063	0.12063	29.063	29.039	29.16	0	708	55	1.1972283	0.032511115	1.1972283	244.53874	0	6.640518						142	6	3	NaN	NaN	NaN	0.84876	1	3102	3102		0.39566	0	1	18814	+		29199	8148	16846	17318	23310	23310					0.027227876057395406
VPPPAAAA	8	Unmodified	_VPPPAAAA_					0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3930017762999	1	693.393002	692.385725	0.90528	0.00062772	-2.057	-0.0014263	-1.1518	-0.00079862	693.3915923816023	29.087	0.16895	29.079	29.031	29.2	-0.0077229	705	55	1.1990347	0.03251815	1.1975152	244.90767	0	6.6419525						152	8	3	NaN	NaN	NaN	0.84945	1	3032	3032		0	0	1	22002	+		29200	8148	16846	17318	23311	23311					0.027227876057395406
VPPPAAAA	8	Unmodified						0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	693.393002	692.385725	1.3437	0.0009317	-2.0567	-0.0014261	-0.71305	-0.00049442	693.3920360470929	29.063	0.12063	29.063	29.039	29.16	0	708	55	1.1972283	0.032511115	1.1972283	244.53874		6.640518	-0.0078101	1.1546E-07	-0.00014342	NaN	0.39566	142	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18814	+		29201	8148	16846	17318							0.027227876057395406
VPPPAAAA	8	Unmodified						0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	693.393002	692.385725	0.90528	0.00062772	-2.057	-0.0014263	-1.1518	-0.00079862	693.3915923816023	29.087	0.16895	29.079	29.031	29.2	-0.0077229	705	55	1.1990347	0.03251815	1.1975152	244.90767		6.6419525	0.0078101	-9.1418E-08	0.00014342	NaN	0.39566	152	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22002	+		29202	8148	16846	17318							0.027227876057395406
VPPPAGGA	8	Unmodified	_VPPPAGGA_					0	0	0		ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3617016479001	1	665.361702	664.354425	1.3166	0.00087598	-4.0435	-0.0026904	-2.7269	-0.0018144	665.3606742371402	33.044	0.16875	33.042	32.993	33.162	-0.0024757	771	52	1.1592519	0.030782461	1.1577325	236.97551	0	6.292572						182	8	4	NaN	NaN	NaN	0.84651	1	2354	2354		1.6704	0	1	13260			29203	2014	16847	17319	23312	23312					0.008822145716635532
VPPPAGGA	8	Unmodified						0	0	0		ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	665.361702	664.354425	1.0675	0.00071031	-0.96561	-0.00064248	0.10193	6.7824E-05	665.3618502101962	33.045	0.16895	33.045	32.997	33.166	0	774	46	1.1574414	0.027160883	1.1574414	236.6054		5.5522614	0.001871	0.00080548	-0.00014555	NaN	1.6704	140	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12848			29204	2014	16847	17319							0.008822145716635532
VPPPAIKG	8	Unmodified	_VPPPAIKG_					0	0	0			REV__nc|ENSG00000099250|O14786-3|NRP1	REV__nc|ENSG00000099250|O14786-3|NRP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	778.4821511346	1	778.482151	777.474875	1.275	0.00099259	-4.66	-0.0036278	-3.385	-0.0026352	778.477950449653	41.135	0.12037	41.143	41.07	41.191	0.0074921	555	46	1.2891023	0.026946783	1.2875829	262.745	0	5.492279						89	6	2	NaN	NaN	NaN	0.84876	1	4388	4388		0.39566	0	1	7988.2	+		29205	8768	16848	17320	23313	23313					0.07723622565276855
VPPPLLLL	8	Unmodified	_VPPPLLLL_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.5808025467003	1	861.580803	860.573526	-0.15703	-0.00013529	2.1128	0.0018203	1.9558	0.001685	861.5789019958077	58.794	0.023979	58.794	58.77	58.794	-0.00045395	312	58	1.433996	0.033850074	1.4324765	291.7872	0	6.8877563						59	2	2	NaN	NaN	NaN	0.84945	1	5406	5406		0	0	1	5654.2			29206	1513	16849	17321	23314	23314					0.13766225810343258
VPPPSLLK	8	Unmodified	_VPPPSLLK_					0	0	0			REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.5396660135002	1	850.539666	849.53239	-0.66097	-0.00056218	7.7957	0.0066305	7.1347	0.0060684	850.5462594676259	57.043	0.072029	57.042	57.018	57.09	-0.00056458	279	70	1.4535767	0.040928483	1.4520572	295.83188	0	8.329773						127	4	3	NaN	NaN	NaN	0.84876	1	5250	5250		0.39566	0	1	20955	+		29207	12498	16850	17322	23315	23315					0.10160464770865474
VPPPVGHI	8	Unmodified	_VPPPVGHI_					0	0	0			REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.4774001077002	1	815.4774	814.470124	2.0784	0.0016949	0.432	0.00035229	2.5104	0.0020472	815.4774221168245	55.821	0.072052	55.821	55.797	55.869	0	468	55	1.3411216	0.032237887	1.3411216	273.1321	0	6.5655518						117	4	3	NaN	NaN	NaN	0.84876	1	4948	4948		0.39566	0	1	18111	+		29208	8507	16851	17323	23316	23316					0.05546738422526687
VPQPHLPF	8	Unmodified	_VPQPHLPF_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.76089518105005	2	467.760895	933.507237	1.7292	0.00080884	-2.3677	-0.0011075	-0.63854	-0.00029868	467.75934787664846	26.336	0.21719	26.336	26.215	26.432	0	1308	97	0.83204526	0.059112847	0.83204526	338.18488	0	24.026398						572	10	3	NaN	NaN	NaN	0.62311	1	6694	6694		23.85	0	1	90514	+		29209	10876	16852	17324	23317	23317					0.037824099682893575
VPQPHLPF	8	Unmodified						0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	467.760895	933.507237	1.7292	0.00080884	-2.3677	-0.0011075	-0.63854	-0.00029868	467.75934787664846	26.336	0.21719	26.336	26.215	26.432	0	1308	97	0.83204526	0.059112847	0.83204526	338.18488		24.026398	0.0057035	-0.00096798	0.012765	NaN	23.85	572	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90514	+		29210	10876	16852	17324							0.037824099682893575
VPQPHLPF	8	Unmodified						0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	467.760895	933.507237	0.77902	0.0003644	-0.75483	-0.00035308	0.024197	1.1318E-05	467.76003759934525	26.336	0.28955	26.324	26.204	26.493	-0.011137	1347	97	0.8080346	0.059112847	0.8065152	328.42575		24.026398	-0.0057035	0.00054091	-0.012765	NaN	23.85	574	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85350	+		29211	10876	16852	17324							0.037824099682893575
VPQSGVPAL	9	Unmodified	_VPQSGVPAL_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	867.4934441024001	1	867.493444	866.486168	1.8267	0.0015846	-1.0244	-0.00088864	0.80231	0.00069599	867.492553443061	22.139	0.16887	22.139	22.091	22.26	0	426	55	1.3661768	0.03219676	1.3661768	277.95767	0	6.5506287						146	8	2	NaN	NaN	NaN	0.059222	1	5623	5623		42.995	7.6983	1	16705			29212	4625	16853	17325	23318	23318					0.04758399868762808
VPQSGVPAL	9	Unmodified	_VPQSGVPAL_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.4934441024001	1	867.493444	866.486168	0.99346	0.00086182	-0.76154	-0.00066063	0.23193	0.00020119	867.492759331124	22.139	0.19291	22.125	22.053	22.246	-0.013731	426	58	1.3661768	0.03398359	1.3646574	277.95767	0	6.9141846						204	9	2	NaN	NaN	NaN	0.059222	1	5481	5481		42.995	14.099	1	20770			29213	4625	16853	17325	23319	23319					0.04758399868762808
VPRIPGSG	8	Unmodified	_VPRIPGSG_					0	0	0		ENST00000552943.5_1_16:699416-703842:+|nuORF	ENST00000552943.5_1_16:699416-703842:+|nuORF	ENST00000552943.5_1_16:699416-703842:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	782.4519136387001	1	782.451914	781.444637	1.852	0.0014491	-1.243	-0.00097257	0.60902	0.00047653	782.4502146839783	56.828	0.14416	56.828	56.756	56.9	0	534	58	1.3016734	0.03410697	1.3016734	265.28384	0	6.9510803						198	7	2	NaN	NaN	NaN	0.82332	1	4512	4512		6.0903	2.5171	1	18583			29214	7559	16854	17326	23320	23320					0.045172639000952586
VPRKEVAPPVR	11	Unmodified	_VPRKEVAPPVR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1247.7582664154	1	1247.75827	1246.75099	1.8928	0.0023617	-6.2648	-0.007817	-4.3721	-0.0054553	1247.7511654957273	37.506	0.072392	37.506	37.482	37.554	0	102	64	1.5582114	0.037124634	1.5582114	315.51355	0	7.517151						198	4	4	NaN	NaN	NaN	0.77843	1	17700	17700		0.51604	0	1	25631			29215	3883	16855	17327	23321	23321					0.13748449342347158
VPRKPPLQ	8	Unmodified	_VPRKPPLQ_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5832621627002	1	934.583262	933.575986	2.1494	0.0020088	-0.62641	-0.00058544	1.523	0.0014234	934.5831549223219	39.091	0.52971	39.095	39.023	39.553	0.0046806	891	130	1.086679	0.07817948	1.0851595	220.8436	0	15.888245						1296	23	4	NaN	NaN	NaN	0.84727	1	6565	6565		1.2418	0	1	572020			29216	5567	16856	17328	23322	23322					0.10654074267995384
VPRMPMIWL	9	Unmodified	_VPRMPMIWL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23;ENST00000462998.1_1_3:47422574-47437716:+|nuORF	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.5452856203667	3	381.545286	1141.61403	1.8385	0.00070149	5.4734	0.0020883	7.3119	0.0027898	381.8812414969028	13.421	0.095932	13.411	13.363	13.459	-0.010098	1551	40	0.6818875	0.024201572	0.6803681	414.6243	0	14.71582						63	5	2	NaN	NaN	NaN	0.67818	1	14049	14049		0.44583	0	1	4155.6			29217	851	16857	17329	23323	23323					0.048885008667866714
VPRMPMIWL	9	Unmodified						0	0	0		ENSG00000076201|ENST00000265562|PTPN23;ENST00000462998.1_1_3:47422574-47437716:+|nuORF	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	381.545286	1141.61403	1.5345	0.00058546	5.2405	0.0019995	6.775	0.002585	381.8800529181215	13.252	0.096081	13.252	13.228	13.325	0	1551	43	0.6818875	0.026061833	0.6818875	414.6243		15.846954	-0.079412	-0.00014953	0.00075972	NaN	0.44583	76	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5701.6			29218	851	16857	17329							0.048885008667866714
VPSALDNV	8	Unmodified	_VPSALDNV_					0	0	0			REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	814.4305094946001	1	814.430509	813.423233	1.7859	0.0014545	4.0175	0.003272	5.8034	0.0047265	814.4342712824001	29.498	0.096569	29.498	29.474	29.57	0	477	58	1.3357477	0.034038067	1.3357477	272.04346	0	6.932312						144	5	3	NaN	NaN	NaN	0.76633	1	4935	4935		13.737	0	1	14733	+		29219	13325	16858	17330	23324	23324					0.009058340807200693
VPSATVLLI	9	Unmodified	_VPSATVLLI_					0	0	0			REV__ENSG00000121350|ENST00000240651|PYROXD1	REV__ENSG00000121350|ENST00000240651|PYROXD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5764454503002	1	912.576445	911.569169	0.80292	0.00073272	-0.37327	-0.00034064	0.42965	0.00039209	912.57598800914	35.168	0.096527	35.168	35.144	35.241	0	312	64	1.433996	0.037389398	1.433996	291.5304	0	7.601227						132	5	3	NaN	NaN	NaN	0.030391	1	6268	6268		58.599	8.7663	1	11178	+		29220	9331	16859	17331	23325	23325					0.10984716596760791
VPSATVLLI	9	Unmodified						0	0	0			REV__ENSG00000121350|ENST00000240651|PYROXD1	REV__ENSG00000121350|ENST00000240651|PYROXD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.576445	911.569169	0.80292	0.00073272	-0.37327	-0.00034064	0.42965	0.00039209	912.57598800914	35.168	0.096527	35.168	35.144	35.241	0	312	64	1.433996	0.037389398	1.433996	291.5304		7.601227	0.0007591	0.0003463	-0.00013079	NaN	58.599	132	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11178	+		29221	9331	16859	17331							0.10984716596760791
VPSEDGATVL	10	Unmodified	_VPSEDGATVL_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	987.4993173413001	1	987.499317	986.492041	1.7953	0.0017728	0.27751	0.00027404	2.0728	0.0020469	987.4993924550463	21.152	0.12042	21.138	21.114	21.234	-0.014004	279	40	1.4535767	0.023128629	1.4520572	295.17706	0	4.6967163						79	6	2	NaN	NaN	NaN	0.22448	1	7929	7929		33.425	6.1291	1	5743.4			29222	84	16860	17332	23326	23326					-0.0017454641023277873
VPSEIDAAF	9	Unmodified	_VPSEIDAAF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.4672889313999	1	948.467289	947.460012	2.0289	0.0019244	-2.0435	-0.0019382	-0.014558	-1.3807E-05	948.4670622978632	25.057	0.28955	25.057	25.009	25.298	0	354	124	1.4090419	0.073099375	1.4090419	286.29578	0	14.852661						676	13	4	NaN	NaN	NaN	0.028349	1	7012	7012		61.271	26.832	1	148450			29223	1174	16861	17333	23327	23327					-0.01581914093389969
VPSEIDAAF	9	Unmodified	_VPSEIDAAF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4672889313999	1	948.467289	947.460012	1.8091	0.0017159	-1.2794	-0.0012135	0.52972	0.00050243	948.4672601475755	25.057	0.24125	25.045	24.996	25.238	-0.012011	351	115	1.4108255	0.067747	1.409306	286.65817	0	13.765167						619	11	4	NaN	NaN	NaN	0.021105	1	6879	6879		70.6	38.147	1	140820			29224	1174	16861	17333	23328	23328					-0.01581914093389969
VPSGALLG	8	Unmodified	_VPSGALLG_					0	0	0		chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|92	chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|92	chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|92	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.2132464967001	2	357.213246	712.41194	1.5136	0.00054068	1.2423	0.00044378	2.7559	0.00098445	357.21341097848875	20.694	0.24107	20.694	20.67	20.911	0	1407	85	0.77102906	0.051892042	0.77102906	314.7915	0	21.186218						322	11	3	NaN	NaN	NaN	0.84945	1	3469	3469		0	0	1	68574			29225	114	16862	17334	23329	23329					0.04423056777250167
VPSGAPCI	8	Unmodified	_VPSGAPCI_					0	0	0			REV__ENST00000502559.1_1_4:8237989-8238388:+|nuORF	REV__ENST00000502559.1_1_4:8237989-8238388:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3756371526	1	743.375637	742.368361	0.97144	0.00072214	0.072392	5.3815E-05	1.0438	0.00077596	743.3754231944973	33.792	0.24134	33.79	33.694	33.935	-0.0018501	594	88	1.265731	0.05220294	1.2642115	258.19293	0	10.648712						355	11	2	NaN	NaN	NaN	0.75682	1	3870	3870		15.013	0	1	44078	+		29226	12521	16863	17335	23330	23330					-0.013128759915616683
VPSGESAIL	9	Unmodified	_VPSGESAIL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.4723743093001	1	872.472374	871.465098	1.7558	0.0015319	-2.7156	-0.0023693	-0.95976	-0.00083736	872.471865659626	22.115	0.2894	22.115	21.994	22.284	0	426	82	1.3661768	0.04830289	1.3661768	277.93286	0	9.82666						357	13	2	NaN	NaN	NaN	0.16171	1	5678	5678		27.789	1.6739	1	39145			29227	3450;8090	16864	17336	23331	23331					0.024223897692422725
VPSHKLML	8	Unmodified	_VPSHKLML_					0	0	0		nc|ENSG00000143498|Q15573-2|TAF1A;ENSG00000143498|ENST00000352967|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.77040562235	2	462.770406	923.526258	1.3955	0.00064582	-5.9693	-0.0027624	-4.5738	-0.0021166	462.76740662707766	17.093	0.19209	17.093	17.021	17.213	0	1518	70	0.7023569	0.04276699	0.7023569	285.51776	0	17.385376						351	9	4	NaN	NaN	NaN	0.26796	1	6481	6481		44.638	5.7206	1	85773			29228	3429	16865	17337	23332	23332					0.06143623267666953
VPSHKLML	8	Unmodified	_VPSHKLML_					0	0	0		nc|ENSG00000143498|Q15573-2|TAF1A;ENSG00000143498|ENST00000352967|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	462.77040562235	2	462.770406	923.526258	1.1953	0.00055316	-3.9808	-0.0018422	-2.7854	-0.001289	462.76880515507423	17.093	0.096085	17.093	17.045	17.141	0	1251	61	0.8670771	0.036849678	0.8670771	352.47882	0	14.979919						130	5	3	NaN	NaN	NaN	0.72013	1	6483	6483		17.799	2.6236	1	13681			29229	3429	16865	17337	23333	23333					0.06143623267666953
VPSHKLML	8	Unmodified	_VPSHKLML_					0	0	0		nc|ENSG00000143498|Q15573-2|TAF1A;ENSG00000143498|ENST00000352967|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.77040562235	2	462.770406	923.526258	1.2268	0.00056773	-4.7323	-0.00219	-3.5055	-0.0016222	462.7680946226921	17.21	0.23987	17.196	17.124	17.364	-0.013567	1515	64	0.7042165	0.039048076	0.70269704	286.27374	0	15.873596						433	11	3	NaN	NaN	NaN	0.14443	1	6357	6357		55.494	19.749	1	97550			29230	3429	16865	17337	23334	23334					0.06143623267666953
VPSHKLML	8	Unmodified	_VPSHKLML_					0	0	0		nc|ENSG00000143498|Q15573-2|TAF1A;ENSG00000143498|ENST00000352967|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	nc|ENSG00000143498|Q15573-2|TAF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	462.77040562235	2	462.770406	923.526258	1.0912	0.00050495	-4.0965	-0.0018957	-3.0053	-0.0013908	462.7685855075381	17.21	0.16785	17.196	17.149	17.316	-0.013567	1257	46	0.86339295	0.027635753	0.8618735	350.98114	0	11.234314						146	8	2	NaN	NaN	NaN	0.14443	1	6358	6358		55.494	8.3578	1	15342			29231	3429	16865	17337	23335	23335					0.06143623267666953
VPSILQISF	9	Unmodified	_VPSILQISF_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.29476778815	2	502.294768	1002.57498	1.881	0.0009448	-1.633	-0.00082027	0.24793	0.00012453	502.29369657611255	26.456	0.16894	26.456	26.384	26.553	0	1284	73	0.8468043	0.04428184	0.8468043	343.8395	0	17.980377						283	8	4	NaN	NaN	NaN	0.21199	1	8709	8709		24.562	1.2276	1	32304	+		29232	8582	16866	17338	23336	23336					0.07379815108424737
VPSILQISF	9	Unmodified						0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	502.294768	1002.57498	1.881	0.0009448	-1.633	-0.00082027	0.24793	0.00012453	502.29369657611255	26.456	0.16894	26.456	26.384	26.553	0	1284	73	0.8468043	0.04428184	0.8468043	343.8395		17.980377	-0.01866	-0.00055678	0.00075972	NaN	24.562	283	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32304	+		29233	8582	16866	17338							0.07379815108424737
VPSILQISF	9	Unmodified						0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	502.294768	1002.57498	1.2111	0.00060834	-0.63351	-0.00031821	0.57762	0.00029014	502.29455796121033	26.504	0.12064	26.494	26.421	26.542	-0.010645	1284	76	0.8468043	0.046129405	0.8452849	343.8395		18.73053	0.01866	0.00044735	-0.00075972	NaN	24.562	233	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28960	+		29234	8582	16866	17338							0.07379815108424737
VPSLSSWFH	9	Unmodified	_VPSLSSWFH_					0	0	0			REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.5258068633	1	1059.52581	1058.51853	1.648	0.0017461	-6.4387	-0.006822	-4.7907	-0.0050759	1059.5190932092303	32.611	0.14481	32.611	32.563	32.707	0	90	58	1.5652816	0.03357458	1.5652816	317.56277	0	6.8115845						129	7	2	NaN	NaN	NaN	0.62619	1	11022	11022		4.4131	0	1	8928.3	+		29235	9089	16867	17339	23337	23337					-0.008388127282387359
VPSTVQLLP	9	Unmodified	_VPSTVQLLP_					0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.28694275605	2	477.286943	952.559333	0.93707	0.00044725	-0.65365	-0.00031198	0.28342	0.00013527	477.28656539790757	27.566	0.096537	27.557	27.533	27.629	-0.009552	1338	55	0.81357855	0.033247292	0.8120591	330.5831	0	13.50946						128	5	2	NaN	NaN	NaN	0.66196	1	7015	7015		2.4615	0	1	11841	+		29236	8502	16868	17340	23338	23338					0.08115528591372367
VPSTVQLLP	9	Unmodified						0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	477.286943	952.559333	1.3259	0.00063286	-1.9737	-0.00094201	-0.64773	-0.00030915	477.28591253246935	27.543	0.12067	27.543	27.519	27.639	0	1326	55	0.8209676	0.033250928	0.8209676	333.58554		13.510925	-0.0068991	-0.00062181	0.0044543	NaN	2.4615	134	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16597	+		29237	8502	16868	17340							0.08115528591372367
VPSTVQLLP	9	Unmodified						0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	477.286943	952.559333	0.93707	0.00044725	-0.65365	-0.00031198	0.28342	0.00013527	477.28656539790757	27.566	0.096537	27.557	27.533	27.629	-0.009552	1338	55	0.81357855	0.033247292	0.8120591	330.5831		13.50946	0.0068991	0.00063825	-0.0044543	NaN	2.4615	128	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11841	+		29238	8502	16868	17340							0.08115528591372367
VPTASATL	8	Unmodified	_VPTASATL_					0	0	0		ENST00000481651.1_1_7:143510290-143510464:-|nuORF	ENST00000481651.1_1_7:143510290-143510464:-|nuORF	ENST00000481651.1_1_7:143510290-143510464:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4246958352002	1	759.424696	758.417419	1.7348	0.0013174	4.9178	0.0037347	6.6526	0.0050521	759.4287472749984	48.402	0.11975	48.402	48.331	48.45	0	435	37	1.360811	0.021464467	1.360811	277.48148	0	4.3768005						81	6	2	NaN	NaN	NaN	0.84887	1	4197	4197		0.32989	0	1	5566.7			29239	7205	16869	17341	23339	23339					0.02854735569053446
VPTDYVEIL	9	Unmodified	_VPTDYVEIL_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5561039387	1	1048.5561	1047.54883	1.8903	0.0019821	-1.4426	-0.0015127	0.44768	0.00046942	1048.5552456486407	29.401	0.12065	29.401	29.353	29.474	0	141	109	1.5352125	0.063726425	1.5352125	311.50433	0	12.930481						326	6	3	NaN	NaN	NaN	0.056143	1	10535	10535		44.302	7.7159	1	44681			29240	2638	16870	17342	23340	23340					0.02695501146308743
VPTDYVEIL	9	Unmodified	_VPTDYVEIL_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5561039387	1	1048.5561	1047.54883	1.3132	0.0013769	-0.6815	-0.00071459	0.63165	0.00066232	1048.5552368642363	29.4	0.14477	29.393	29.344	29.489	-0.0077209	138	76	1.5369828	0.044266224	1.5354633	311.86353	0	8.981903						249	7	2	NaN	NaN	NaN	0.032764	1	10323	10323		55.494	21.055	1	43602			29241	2638	16870	17342	23341	23341					0.02695501146308743
VPTEENEM	8	Unmodified	_VPTEENEM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.3978887372	1	948.397889	947.390612	1.7931	0.0017006	0.33936	0.00032185	2.1325	0.0020224	948.3978924628924	16.062	0.21594	16.062	15.99	16.206	0	339	55	1.4179583	0.03209412	1.4179583	288.10776	0	6.521057						212	10	2	NaN	NaN	NaN	0.080089	1	7005	7005		69.363	27.579	1	21144			29242	2268	16871	17343	23342	23342					-0.08518741104455785
VPTEENEM	8	Unmodified	_VPTEENEM_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.3978887372	1	948.397889	947.390612	2.0816	0.0019742	-0.7252	-0.00068778	1.3564	0.0012864	948.397559110201	16.035	0.21577	16.023	15.975	16.19	-0.012611	333	52	1.4215236	0.03030622	1.4200041	288.83215	0	6.157776						229	10	3	NaN	NaN	NaN	0.11673	1	6874	6874		60.984	25.687	1	19152			29243	2268	16871	17343	23343	23343					-0.08518741104455785
VPTEENEM	8	Oxidation (M)	_VPTEENEM(Oxidation (M))_		VPTEENEM(1)		VPTEENEM(76)	0	0	1		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.3928033593	1	964.392803	963.385527	1.34	0.0012923	-0.84108	-0.00081113	0.4989	0.00048113	964.3921116084764	13.06	0.16809	13.06	12.988	13.156	0	369	55	1.4001206	0.032128215	1.4001206	284.4157	0	6.526428						186	8	2	NaN	NaN	NaN	0.059364	1	7416	7416		75.698	41.26	1	28600			29244	2268	16871	17344	23344	23344		261			-0.09763044967064616
VPTEENEM	8	Oxidation (M)	_VPTEENEM(Oxidation (M))_		VPTEENEM(1)		VPTEENEM(50)	0	0	1		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.3928033593	1	964.392803	963.385527	1.1582	0.0011169	1.1663	0.0011248	2.3244	0.0022417	964.394201204532	13.062	0.33542	13.052	12.957	13.292	-0.00947	369	55	1.4001206	0.032128215	1.3986012	284.4157	0	6.526428						321	15	2	NaN	NaN	NaN	0.19587	1	7263	7263		50.315	15.876	1	40529			29245	2268	16871	17344	23345	23345		261			-0.09763044967064616
VPTEQAQA	8	Unmodified	_VPTEQAQA_					0	0	0		ENST00000576359.1_1_17:80616295-80616565:-|nuORF;ENSG00000141542|ENST00000571995|RAB40B	ENST00000576359.1_1_17:80616295-80616565:-|nuORF	ENST00000576359.1_1_17:80616295-80616565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	843.4206730898	1	843.420673	842.413397	1.8992	0.0016018	6.0894	0.0051359	7.9885	0.0067377	843.4265302740189	22.573	0.12059	22.573	22.525	22.645	0	414	160	1.3733286	0.09487748	1.3733286	279.5374	0	19.312042						251	6	3	NaN	NaN	NaN	0.78967	1	5298	5298		10.605	0.85897	1	63966			29246	3330	16872	17345	23346	23346					-0.014113539246750406
VPTKKMYE	8	Unmodified	_VPTKKMYE_					0	0	0		ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.26515306895	2	498.265153	994.515753	1.4591	0.00072702	4.6077	0.0022959	6.0668	0.0030229	498.2676158032449	28.29	0.072386	28.281	28.257	28.33	-0.0089779	1314	40	0.8283535	0.023997664	0.8268341	336.38458	0	9.745178						56	4	2	NaN	NaN	NaN	0.82797	1	8209	8209		5.4659	0.27698	1	3645.5			29247	551	16873	17346	23347	23347					0.018275958225899558
VPTTAVTIT	9	Unmodified	_VPTTAVTIT_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	902.5193245019001	1	902.519325	901.512048	1.7635	0.0015916	-3.3712	-0.0030426	-1.6077	-0.001451	902.5161102379342	27.76	0.048258	27.76	27.76	27.808	0	327	70	1.425088	0.041006923	1.425088	289.7675	0	8.338074						78	3	2	NaN	NaN	NaN	0.63698	1	6111	6111		3.9685	0.39873	1	7168.4			29248	2127	16874	17347	23348	23348					0.057352493203779886
VPTTDVSQL	9	Unmodified	_VPTTDVSQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	959.5044027192001	1	959.504403	958.497126	1.3077	0.0012547	-0.21705	-0.00020826	1.0906	0.0010465	959.5043149411656	21.007	0.19248	21.007	20.935	21.127	0	279	73	1.4535767	0.042710304	1.4535767	295.29584	0	8.676636						368	9	3	NaN	NaN	NaN	0.0098181	1	7294	7294		92.758	31.776	1	54018			29249	2713	16875	17348	23349	23349					0.01621757452392103
VPTTDVSQL	9	Unmodified	_VPTTDVSQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	959.5044027192001	1	959.504403	958.497126	1.2469	0.0011965	0.59363	0.00056959	1.8406	0.001766	959.505360108582	21.007	0.24065	20.993	20.921	21.162	-0.014086	279	76	1.4535767	0.044487596	1.4520572	295.29584	0	9.037689						355	11	3	NaN	NaN	NaN	0.024359	1	7155	7155		66.481	2.7507	1	53105			29250	2713	16875	17348	23350	23350					0.01621757452392103
VPTTPMPCPM	10	Unmodified	_VPTTPMPCPM_					0	0	0			REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.2450487910501	2	537.245049	1072.47554	2.1536	0.001157	-3.0954	-0.001663	-0.94172	-0.00050594	537.7447484389564	23.224	0.12053	23.224	23.2	23.32	0	1278	64	0.85049206	0.038698435	0.85049206	345.03204	0	15.699371						92	6	2	NaN	NaN	NaN	0.72631	1	11653	11653		6.2502	0.15988	1	7943.6	+		29251	11733	16876	17349	23351	23351					-0.05779410163836474
VPTTPMPCPM	10	Unmodified						0	0	0			REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.245049	1072.47554	2.1536	0.001157	-3.0954	-0.001663	-0.94172	-0.00050594	537.7447484389564	23.224	0.12053	23.224	23.2	23.32	0	1278	64	0.85049206	0.038698435	0.85049206	345.03204		15.699371	0.006929	0.0016913	-0.0010838	NaN	6.2502	92	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7943.6	+		29252	11733	16876	17349							-0.05779410163836474
VPTTPMPCPM	10	Unmodified						0	0	0			REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	REV__ENST00000324856.11_1_1:27088777-27089541:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	537.245049	1072.47554	1.8717	0.0010056	-6.207	-0.0033347	-4.3352	-0.0023291	537.7438980620598	23.223	0.072399	23.21	23.21	23.283	-0.013294	1272	55	0.854179	0.03317547	0.8526596	346.5278		13.458801	-0.006929	-0.0016521	0.0010838	NaN	6.2502	79	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5125.9	+		29253	11733	16876	17349							-0.05779410163836474
VPTWLFVF	8	Unmodified	_VPTWLFVF_					0	0	0			REV__ENSG00000182544|ENST00000329548|MFSD5	REV__ENSG00000182544|ENST00000329548|MFSD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5553160777001	1	1008.55532	1007.54804	1.1593	0.0011692	-4.4078	-0.0044455	-3.2485	-0.0032763	1008.553961573287	34.999	0.26534	34.999	34.927	35.192	0	198	124	1.5015416	0.07268906	1.5015416	304.8295	0	14.756683						532	12	3	NaN	NaN	NaN	0.46176	1	8895	8895		33.137	1.5759	1	87841	+		29254	10867	16877	17350	23352	23352					0.04456751287898442
VPVDRWPVL	9	Unmodified	_VPVDRWPVL_					0	0	0		ENST00000436309.5_3_9:123636327-123639283:-|nuORF;ENST00000456291.1_3_9:123636327-123638204:-|nuORF;ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000436309.5_3_9:123636327-123639283:-|nuORF	ENST00000436309.5_3_9:123636327-123639283:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.81365903305	2	540.813659	1079.61277	1.7981	0.00097246	6.1426	0.003322	7.9407	0.0042945	540.8172401881675	29.908	0.072367	29.908	29.884	29.956	0	1287	34	0.8449601	0.020285964	0.8449601	342.75903	0	8.229034						62	4	2	NaN	NaN	NaN	0.66529	1	11978	11978		2.1763	0.67093	1	6909.1			29255	6683	16878	17351	23353	23353					0.07614326093880663
VPVDRWPVL	9	Unmodified						0	0	0		ENST00000436309.5_3_9:123636327-123639283:-|nuORF;ENST00000456291.1_3_9:123636327-123638204:-|nuORF;ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000436309.5_3_9:123636327-123639283:-|nuORF	ENST00000436309.5_3_9:123636327-123639283:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.813659	1079.61277	1.3145	0.00071089	8.2083	0.0044392	9.5228	0.0051501	540.8176426312083	29.907	0.07239	29.9	29.876	29.948	-0.0070667	1284	37	0.8468043	0.022124112	0.8452849	343.5071		8.97467	-0.0039928	0.0014964	0.00016237	NaN	2.1763	68	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5868.5			29256	6683	16878	17351							0.07614326093880663
VPVDSAPVM	9	Oxidation (M)	_VPVDSAPVM(Oxidation (M))_		VPVDSAPVM(1)		VPVDSAPVM(61)	0	0	1		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.4600950635001	1	930.460095	929.452819	2.2362	0.0020807	0.2139	0.00019902	2.4501	0.0022797	930.4595670229588	17.621	0.095921	17.621	17.573	17.669	0	357	43	1.407258	0.024972677	1.407258	286.01266	0	5.07547						92	5	2	NaN	NaN	NaN	0.028349	1	6585	6585		61.271	40.716	1	7053.1			29257	2968	16879	17352	23354	23354		340			-0.01472969965448101
VPVEEEEEL	9	Unmodified	_VPVEEEEEL_					0	0	0		ENST00000431180.5_1_3:47122459-47155398:-|nuORF;ENSG00000181555|ENST00000409792|SETD2	ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENST00000431180.5_1_3:47122459-47155398:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5044622987	1	1072.50446	1071.49719	1.4718	0.0015786	1.7375	0.0018635	3.2094	0.0034421	1072.5056848297872	20.862	0.12051	20.862	20.814	20.935	0	204	55	1.4979934	0.03193426	1.4979934	303.864	0	6.477783						148	6	3	NaN	NaN	NaN	0.055351	1	11620	11620		44.638	16.85	1	11469			29258	5230	16880	17353	23355	23355					-0.03570287338266098
VPVEEPLEL	9	Unmodified	_VPVEEPLEL_					0	0	0		ENSG00000177045|ENST00000317578|SIX5;ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5561039386998	1	1024.5561	1023.54883	2.2534	0.0023087	-0.80207	-0.00082176	1.4513	0.0014869	1024.555023427133	27.567	0.19306	27.567	27.495	27.688	0	204	112	1.4979934	0.06568098	1.4979934	304.04495	0	13.331146						532	9	4	NaN	NaN	NaN	0.0018626	1	9515	9515		111.43	40.833	1	116090			29259	5056	16881	17354	23356	23356					0.037995011462726325
VPVEEPLEL	9	Unmodified	_VPVEEPLEL_					0	0	0		ENSG00000177045|ENST00000317578|SIX5;ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.78169020265	2	512.78169	1023.54883	0.88962	0.00045618	-1.2512	-0.00064159	-0.36157	-0.00018541	512.7811162234711	27.566	0.14482	27.557	27.508	27.653	-0.009552	1317	64	0.8265074	0.038757086	0.82498795	335.50497	0	15.732727						169	7	3	NaN	NaN	NaN	0.094712	1	9332	9332		36.586	2.1477	1	15479			29260	5056	16881	17354	23357	23357					0.037995011462726325
VPVEEPLEL	9	Unmodified	_VPVEEPLEL_					0	0	0		ENSG00000177045|ENST00000317578|SIX5;ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5561039386998	1	1024.5561	1023.54883	1.4582	0.001494	-0.30787	-0.00031543	1.1503	0.0011786	1024.5554484579634	27.566	0.21719	27.557	27.508	27.726	-0.009552	201	109	1.4997677	0.06390238	1.4982482	304.40506	0	12.970154						585	10	4	NaN	NaN	NaN	0.013281	1	9334	9334		82.96	12.36	1	116930			29261	5056	16881	17354	23358	23358					0.037995011462726325
VPVEEPLEL	9	Unmodified						0	0	0		ENSG00000177045|ENST00000317578|SIX5;ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.78169	1023.54883	1.7193	0.00088163	-0.93237	-0.0004781	0.78695	0.00040353	512.7813581396917	27.543	0.09654	27.543	27.519	27.615	0	1323	52	0.8228144	0.03137821	0.8228144	334.0059		12.737366	-0.0068991	0.00021004	-0.0010868	NaN	36.586	134	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13362			29262	5056	16881	17354							0.037995011462726325
VPVEEQEEF	9	Unmodified	_VPVEEQEEF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.5047966497	1	1105.5048	1104.49752	1.4643	0.0016188	0.34534	0.00038178	1.8097	0.0020006	1105.5054431728677	20.814	0.14463	20.814	20.766	20.911	0	162	61	1.5228153	0.035429835	1.5228153	308.7817	0	7.1841125						209	7	3	NaN	NaN	NaN	0.00065562	1	13027	13027		115.07	72.752	1	19213			29263	3407	16882	17355	23359	23359					-0.050548676184234864
VPVEEQEEF	9	Unmodified	_VPVEEQEEF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5047966497	1	1105.5048	1104.49752	1.0456	0.001156	-0.85284	-0.00094282	0.19279	0.00021314	1105.503502368443	20.815	0.12036	20.801	20.752	20.873	-0.014088	162	61	1.5228153	0.035429835	1.5212959	308.7817	0	7.1841125						183	6	2	NaN	NaN	NaN	8.9076E-05	1	12681	12681		123.58	68.164	1	19913			29264	3407	16882	17355	23360	23360					-0.050548676184234864
VPVGGGHA	8	Unmodified	_VPVGGGHA_					0	0	0		ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.3678496583	1	693.36785	692.360573	1.2184	0.00084479	-4.3509	-0.0030168	-3.1325	-0.002172	693.3636207239782	24.429	0.096527	24.417	24.393	24.489	-0.012749	678	85	1.2152823	0.050551176	1.213763	248.22653	0	10.325317						131	5	2	NaN	NaN	NaN	0.84876	1	3023	3023		0.39566	0	1	9320.9			29265	6731	16883	17356	23361	23361					0.0020873280317346143
VPVIKVAN	8	Unmodified	_VPVIKVAN_					0	0	0		LAMTOR3|p.G29R|1|0.17|ENSG00000109270|chr4:99887314-99887314|C/T|missense_variant;ENSG00000109270|ENST00000499666|LAMTOR3	LAMTOR3|p.G29R|1|0.17|ENSG00000109270|chr4:99887314-99887314|C/T|missense_variant	LAMTOR3|p.G29R|1|0.17|ENSG00000109270|chr4:99887314-99887314|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.5349149866	1	839.534915	838.527639	-0.46925	-0.00039395	-0.1585	-0.00013306	-0.62775	-0.00052701	839.5341747070373	58.818	0.048008	58.818	58.794	58.842	-0.00045395	366	46	1.4019053	0.026769161	1.4003859	285.3754	0	5.4492188						57	3	2	NaN	NaN	NaN	0.84887	1	5124	5124		0.32989	0	1	7647.4			29266	1718	16884	17357	23362	23362					0.1019158062807719
VPVIRNGG	8	Unmodified	_VPVIRNGG_					0	0	0		ENSG00000120896|ENST00000240123|SORBS3;ENST00000523402.5_1_8:22411983-22419017:+|nuORF;ENST00000517535.5_1_8:22411983-22423386:+|nuORF	ENSG00000120896|ENST00000240123|SORBS3	ENSG00000120896|ENST00000240123|SORBS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.4784627402001	1	811.478463	810.471186	2.1637	0.0017558	4.8608	0.0039444	7.0244	0.0057002	811.4812941795177	58.845	0.048069	58.845	58.82	58.869	0	426	49	1.3661768	0.02860713	1.3661768	278.25757	0	5.826599						52	3	2	NaN	NaN	NaN	0.84887	1	4901	4901		0.32989	0	1	3917.6			29267	2277	16885	17358	23363	23363					0.05836952791423755
VPVKDSWLL	9	Unmodified	_VPVKDSWLL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.8080423389001	2	528.808042	1055.60153	1.6899	0.00089362	-0.93656	-0.00049526	0.75332	0.00039836	528.8077049774969	25.467	0.21715	25.455	25.407	25.624	-0.012011	1275	88	0.85233563	0.053429186	0.8508162	345.85004	0	21.67981						413	10	4	NaN	NaN	NaN	0.077759	1	10688	10688		39.039	3.7426	1	100020			29268	957	16886	17359	23364	23364					0.07595503999755238
VPVKPVIRI	9	Unmodified	_VPVKPVIRI_					0	0	0			REV__ENST00000256689.9_1_12:46752348-46752465:-|nuORF	REV__ENST00000256689.9_1_12:46752348-46752465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.6928126121	1	1020.69281	1019.68554	1.4598	0.00149	-2.2952	-0.0023427	-0.83538	-0.00085267	1020.6898355545668	39.885	0.14463	39.891	39.819	39.963	0.0060463	285	49	1.4500183	0.028470516	1.4484988	294.32236	0	5.7789						229	7	3	NaN	NaN	NaN	0.68801	1	9180	9180		0.23014	0.23014	1	22398	+		29269	11527	16887	17360	23365	23365					0.17648079887305812
VPVLPPAL	8	Unmodified	_VPVLPPAL_					0	0	0		ENST00000588847.5_1_17:76008084-76027788:+|nuORF	ENST00000588847.5_1_17:76008084-76027788:+|nuORF	ENST00000588847.5_1_17:76008084-76027788:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.5182022898999	1	805.518202	804.510926	2.0111	0.0016199	-3.4984	-0.002818	-1.4873	-0.001198	805.5140939130665	55.701	0.26461	55.701	55.556	55.821	0	438	55	1.359022	0.032203674	1.359022	276.83453	0	6.5599365						193	12	2	NaN	NaN	NaN	0.84876	1	4807	4807		0.39566	0	1	19488			29270	7715	16888	17361	23366	23366					0.10085079742123071
VPVLVEEAF	9	Unmodified	_VPVLVEEAF_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000496727.1_1_17:18154365-18154758:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5506246303	1	1002.55062	1001.54335	1.8565	0.0018613	-0.62091	-0.00062249	1.2356	0.0012388	1002.5503790763565	29.787	0.12067	29.787	29.739	29.86	0	216	94	1.4908947	0.055047512	1.4908947	302.6925	0	11.176147						223	6	3	NaN	NaN	NaN	0.27442	1	8660	8660		20.555	9.007	1	21977			29271	5087	16889	17362	23367	23367					0.04263822354471358
VPVPKIKG	8	Unmodified	_VPVPKIKG_					0	0	0		nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR	nc|ENSG00000112964|P10912-4|GHR	nc|ENSG00000112964|P10912-4|GHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.5556504287002	1	837.55565	836.548374	-0.5425	-0.00045438	3.5835	0.0030014	3.041	0.002547	837.5581792713886	59.082	0.19212	59.082	59.01	59.202	-0.00045395	363	79	1.4036897	0.04640746	1.4021703	285.7495	0	9.447174						340	9	3	NaN	NaN	NaN	0.84945	1	5101	5101		0	0	1	66343			29272	1894	16890	17363	23368	23368					0.12356171007763805
VPVPKIKG	8	Unmodified	_VPVPKIKG_					0	0	0		nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR	nc|ENSG00000112964|P10912-4|GHR	nc|ENSG00000112964|P10912-4|GHR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.5556504287002	1	837.55565	836.548374	-0.33855	-0.00028356	3.9305	0.003292	3.5919	0.0030084	837.5583335624061	58.962	0.07198	58.962	58.89	58.962	-0.00045395	369	40	1.4001206	0.023200035	1.3986012	285.02295	0	4.7228394						85	4	2	NaN	NaN	NaN	0.84945	1	5102	5102		0	0	1	6199.5			29273	1894	16890	17363	23369	23369					0.12356171007763805
VPVPLPVI	8	Unmodified	_VPVPLPVI_					0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	833.5495024183	1	833.549502	832.542226	1.8683	0.0015573	-4.8329	-0.0040285	-2.9646	-0.0024712	833.5454344628823	57.165	0.048096	57.165	57.165	57.213	0	375	64	1.3965509	0.03749287	1.3965509	284.3184	0	7.633026						118	3	3	NaN	NaN	NaN	0.84945	1	5172	5172		0	0	1	23240	+		29274	9519	16891	17364	23370	23370					0.11925652776221796
VPVPLPVI	8	Unmodified	_VPVPLPVI_					0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.5495024183	1	833.549502	832.542226	-0.55964	-0.00046649	-1.6514	-0.0013765	-2.211	-0.001843	833.5477511564748	57.163	0.072124	57.162	57.138	57.21	-0.00053787	372	67	1.3983358	0.03927195	1.3968164	284.6818	0	7.9952393						133	4	3	NaN	NaN	NaN	0.84945	1	5058	5058		0	0	1	25868	+		29275	9519	16891	17364	23371	23371					0.11925652776221796
VPVPLPVI	8	Unmodified						0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	833.549502	832.542226	1.8683	0.0015573	-4.8329	-0.0040285	-2.9646	-0.0024712	833.5454344628823	57.165	0.048096	57.165	57.165	57.213	0	375	64	1.3965509	0.03749287	1.3965509	284.3184		7.633026	0.0012796	-0.0015843	-0.00013278	NaN	0	118	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23240	+		29276	9519	16891	17364							0.11925652776221796
VPVPLPVI	8	Unmodified						0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	833.549502	832.542226	-0.55964	-0.00046649	-1.6514	-0.0013765	-2.211	-0.001843	833.5477511564748	57.163	0.072124	57.162	57.138	57.21	-0.00053787	372	67	1.3983358	0.03927195	1.3968164	284.6818		7.9952393	-0.0012796	0.0010676	0.00013278	NaN	0	133	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25868	+		29277	9519	16891	17364							0.11925652776221796
VPVPVLIG	8	Unmodified	_VPVPVLIG_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	793.5182022899003	1	793.518202	792.510926	2.0413	0.0016198	-0.32481	-0.00025774	1.7164	0.001362	793.5191079009821	28.942	0.072407	28.933	28.909	28.982	-0.0083485	486	37	1.3303722	0.021505713	1.3288528	271.06735	0	4.3818665						56	4	2	NaN	NaN	NaN	0.84945	1	4576	4576		0	0	1	3370.1			29278	650	16892	17365	23372	23372					0.1063707974215049
VPVPVLIG	8	Unmodified						0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	793.518202	792.510926	1.8964	0.0015048	-0.11849	-9.4024E-05	1.7779	0.0014108	793.5179697066726	28.967	0.072393	28.967	28.918	28.991	0	483	34	1.3321642	0.019712448	1.3321642	271.4325		4.0164795	0.016619	8.1696E-05	0.0016557	NaN	0	46	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2952.5			29279	650	16892	17365							0.1063707974215049
VPVQRPAA	8	Unmodified	_VPVQRPAA_					0	0	0			REV__ENSG00000187609|ENST00000340951|EXD3	REV__ENSG00000187609|ENST00000340951|EXD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.2506946355	2	419.250695	836.486836	1.7025	0.00071377	3.8404	0.0016101	5.5429	0.0023239	419.25229363229084	17.093	0.096085	17.093	17.045	17.141	0	1509	55	0.70793515	0.033468008	0.70793515	288.22385	0	13.625916						121	5	2	NaN	NaN	NaN	0.84455	1	5227	5227		2.7852	0	1	11673	+		29280	11029	16893	17366	23373	23373					0.06205239308462751
VPVRGGPK	8	Unmodified	_VPVRGGPK_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.2532373244501	2	405.253237	808.491922	1.5847	0.00064222	3.5228	0.0014276	5.1076	0.0020699	405.25443091746183	17.234	0.14383	17.22	17.149	17.292	-0.013569	1515	58	0.7042165	0.035329223	0.70269704	286.8699	0	14.391724						178	7	3	NaN	NaN	NaN	0.8439	1	4779	4779		3.1533	0	1	12947			29281	2601	16894	17367	23374	23374					0.08001543171099001
VPVSSDGH	8	Unmodified	_VPVSSDGH_					0	0	0			REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.19304237085004	2	399.193042	796.371532	0.52618	0.00021005	5.4708	0.0021839	5.997	0.0023939	399.19531762310896	31.597	0.12072	31.597	31.549	31.67	0	1398	40	0.77658504	0.024073124	0.77658504	316.43018	0	9.808929						130	6	3	NaN	NaN	NaN	0.8439	1	4706	4706		3.1533	1.7138	1	18737	+		29282	9585	16895	17368	23375	23375					-0.034799096131791885
VPVSSDGH	8	Unmodified						0	0	0			REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	399.193042	796.371532	0.52618	0.00021005	5.4708	0.0021839	5.997	0.0023939	399.19531762310896	31.597	0.12072	31.597	31.549	31.67	0	1398	40	0.77658504	0.024073124	0.77658504	316.43018		9.808929	0.038949	-8.7769E-05	0.0016856	NaN	3.1533	130	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18737	+		29283	9585	16895	17368							-0.034799096131791885
VPVSSDGH	8	Unmodified						0	0	0			REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	REV__ENST00000394996.2_1_10:120692379-120692769:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	399.193042	796.371532	0.58748	0.00023452	5.7091	0.002279	6.2966	0.0025136	399.19579419368915	31.524	0.096533	31.519	31.471	31.568	-0.0044174	1401	40	0.77473325	0.024073124	0.7732138	315.67563		9.808929	-0.038949	0.0001025	-0.0016856	NaN	3.1533	143	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24911	+		29284	9585	16895	17368							-0.034799096131791885
VPVSSIFL	8	Unmodified	_VPVSSIFL_					0	0	0		L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|11|3|sense	L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|11|3|sense	L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|11|3|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	861.5080315341	1	861.508032	860.500755	2.2101	0.001904	-1.4075	-0.0012126	0.80265	0.00069149	861.5065590052691	37.961	0.048038	37.964	37.94	37.988	0.0034256	336	34	1.419741	0.019607902	1.4182216	288.88705	0	3.9897766						50	3	2	NaN	NaN	NaN	0.76633	1	5404	5404		13.737	0	1	2808.4			29285	7846	16896	17369	23376	23376					0.06492472016896045
VPVVPEPEV	9	Unmodified	_VPVVPEPEV_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5349745661001	1	964.534975	963.527698	1.2595	0.0012149	-2.2844	-0.0022034	-1.0249	-0.00098856	964.5330395531199	24.454	0.096487	24.454	24.406	24.502	0	321	64	1.4286518	0.03740132	1.4286518	290.21085	0	7.5975647						105	5	2	NaN	NaN	NaN	0.49672	1	7443	7443		9.746	0	1	7369.5			29286	5632	16897	17370	23377	23377					0.044475358374370444
VPVVPEPEV	9	Unmodified	_VPVVPEPEV_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.77112551635	2	482.771126	963.527698	1.4397	0.00069506	-0.17691	-8.5405E-05	1.2628	0.00060965	482.770854972819	24.43	0.072355	24.43	24.406	24.478	0	1347	49	0.8080346	0.029582024	0.8080346	328.27725	0	12.018158						71	4	2	NaN	NaN	NaN	0.45297	1	7447	7447		11.548	6.6387	1	4808.3			29287	5632	16897	17370	23378	23378					0.044475358374370444
VPVVPEPEV	9	Unmodified	_VPVVPEPEV_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5349745661001	1	964.534975	963.527698	1.6178	0.0015605	-1.2249	-0.0011814	0.39295	0.00037901	964.5330495418351	24.454	0.072369	24.441	24.417	24.489	-0.012749	321	58	1.4286518	0.033839345	1.4271324	290.21085	0	6.873993						83	4	2	NaN	NaN	NaN	0.10956	1	7292	7292		34.439	2.8777	1	5704.4			29288	5632	16897	17370	23379	23379					0.044475358374370444
VPVVRGRK	8	Unmodified	_VPVVRGRK_					0	0	0			REV__ENSG00000150628|ENST00000280191|SPATA4	REV__ENSG00000150628|ENST00000280191|SPATA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	910.5944955510003	1	910.594496	909.587219	1.9665	0.0017907	0.13728	0.00012501	2.1038	0.0019157	910.5942691037849	55.701	0.096409	55.701	55.677	55.773	0	270	40	1.458913	0.023118854	1.458913	296.6056	0	4.700165						86	5	2	NaN	NaN	NaN	0.84887	1	6224	6224		0.32989	0	1	5965.3	+		29289	10011	16898	17371	23380	23380					0.12880896362139538
VPVWDVEATL	10	Unmodified	_VPVWDVEATL_					0	0	0		nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1128.5935520775	1	1128.59355	1127.58628	1.3652	0.0015408	-0.47959	-0.00054126	0.88561	0.00099949	1128.5930848365958	31.187	0.072392	31.187	31.187	31.259	0	102	43	1.5582114	0.024745703	1.5582114	315.8791	0	5.016449						79	4	2	NaN	NaN	NaN	0.17937	1	14001	14001		37.302	20.718	1	7014.1			29290	2074	16899	17372	23381	23381					0.02758592411896643
VPWTELLSL	9	Unmodified	_VPWTELLSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5928237960002	1	1057.59282	1056.58555	1.9303	0.0020415	-2.9716	-0.0031427	-1.0412	-0.0011012	1057.5882888319254	36.519	0.21701	36.519	36.446	36.663	0	102	76	1.5582114	0.044205308	1.5582114	316.1358	0	8.968536						424	10	4	NaN	NaN	NaN	0.023074	1	10952	10952		68.108	22.943	1	58137			29291	1386	16900	17373	23382	23382					0.05951797762872957
VPWTELLSL	9	Unmodified	_VPWTELLSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.3000501313002	2	529.30005	1056.58555	1.4222	0.00075279	-1.5201	-0.0008046	-0.09787	-5.1802E-05	529.2988691513084	36.519	0.12064	36.519	36.471	36.591	0	1251	34	0.8670771	0.020259678	0.8670771	351.82742	0	8.220612						132	6	3	NaN	NaN	NaN	0.094712	1	10953	10953		36.586	0	1	12008			29292	1386	16900	17373	23383	23383					0.05951797762872957
VPWTELLSL	9	Unmodified	_VPWTELLSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5928237960002	1	1057.59282	1056.58555	1.7325	0.0018323	-5.4044	-0.0057156	-3.6718	-0.0038833	1057.5855826029285	36.517	0.24099	36.519	36.422	36.663	0.0016785	99	76	1.5599792	0.044186592	1.5584598	316.49448	0	8.964722						431	11	3	NaN	NaN	NaN	0.016254	1	10725	10725		76.739	15.468	1	64058			29293	1386	16900	17373	23384	23384					0.05951797762872957
VPWTELLSL	9	Unmodified						0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	529.30005	1056.58555	1.2878	0.00068163	0.91327	0.00048339	2.2011	0.001165	529.3002217418311	36.517	0.12059	36.519	36.47	36.591	0.0016785	1248	34	0.8689189	0.020259678	0.86739945	352.57474		8.220612	-0.00016104	0.001589	0.00016117	NaN	36.586	84	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7372.2			29294	1386	16900	17373							0.05951797762872957
VPYGQCWVF	9	Unmodified	_VPYGQCWVF_					0	0	0		ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5077139580999	1	1098.50771	1097.50044	1.3046	0.0014331	5.4085	0.0059413	6.7131	0.0073744	1098.5122878319826	31.983	0.19309	31.983	31.839	32.032	0	87	67	1.5670487	0.038882017	1.5670487	317.7759	0	7.8847656						210	9	2	NaN	NaN	NaN	0.61413	1	12733	12733		4.9097	1.3365	1	17279			29295	1093	16901	17374	23385	23385					-0.044412709746211476
VPYGQCWVF	9	Unmodified						0	0	0		ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1098.50771	1097.50044	1.2446	0.0013672	5.4299	0.0059648	6.6745	0.007332	1099.516420714952	31.958	0.16891	31.954	31.906	32.075	-0.0037613	87	70	1.5670487	0.04064727	1.5655292	317.7759		8.242706	-0.014495	1.4164E-05	-0.00075972	NaN	4.9097	172	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12307			29296	1093	16901	17374							-0.044412709746211476
VPYSVLEPVL	10	Unmodified	_VPYSVLEPVL_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1115.6346886107	1	1115.63469	1114.62741	1.0956	0.0012223	-0.1522	-0.0001698	0.94344	0.0010525	1115.6354369585147	31.356	0.096535	31.356	31.308	31.404	0	66	61	1.579413	0.03531742	1.579413	320.2221	0	7.1605225						150	5	3	NaN	NaN	NaN	0.088985	1	13475	13475		47.482	12.185	1	16817			29297	398	16902	17375	23386	23386					0.0746835345139516
VPYSVLEPVL	10	Unmodified	_VPYSVLEPVL_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1115.6346886107	1	1115.63469	1114.62741	0.87128	0.00097203	0.012103	1.3503E-05	0.88338	0.00098553	1115.6349927198978	31.331	0.096502	31.326	31.302	31.398	-0.0050716	63	61	1.5811787	0.03531742	1.5796592	320.58008	0	7.1605225						157	5	3	NaN	NaN	NaN	0.013201	1	13086	13086		67.154	32.715	1	17075			29298	398	16902	17375	23387	23387					0.0746835345139516
VPYWPEVGM	9	Unmodified	_VPYWPEVGM_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1077.5073796071	1	1077.50738	1076.5001	1.8774	0.002023	0.77939	0.0008398	2.6568	0.0028628	1077.509503955976	30.029	0.24138	30.029	29.932	30.173	0	147	73	1.5316714	0.042493343	1.5316714	310.67715	0	8.619141						465	11	4	NaN	NaN	NaN	0.03623	1	11817	11817		52.758	34.959	1	65149			29299	1828	16903	17376	23388	23388					-0.03508690694457073
VPYWPEVGM	9	Unmodified	_VPYWPEVGM_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1077.5073796071	1	1077.50738	1076.5001	1.5014	0.0016177	0.67713	0.00072961	2.1785	0.0023473	1077.509358181403	30.028	0.19306	30.021	29.949	30.142	-0.0064106	144	94	1.533442	0.05486095	1.5319226	311.0363	0	11.127747						445	9	4	NaN	NaN	NaN	0.062072	1	11504	11504		41.785	19.658	1	62229			29300	1828	16903	17376	23389	23389					-0.03508690694457073
VPYWPEVGM	9	Oxidation (M)	_VPYWPEVGM(Oxidation (M))_		VPYWPEVGM(1)		VPYWPEVGM(50)	0	0	1		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1093.5022942291998	1	1093.50229	1092.49502	1.8724	0.0020475	0.95239	0.0010414	2.8248	0.0030889	1093.5007603948345	26.891	0.24126	26.891	26.795	27.036	0	165	82	1.5210435	0.047837973	1.5210435	308.46426	0	9.701416						352	11	2	NaN	NaN	NaN	0.043119	1	12491	12491		49.833	35.408	1	59816			29301	1828	16903	17377	23390	23390		207			-0.04752994557088641
VQAAAAAA	8	Unmodified	_VQAAAAAA_					0	0	0		nc|ENSG00000126746|Q8TF68-3|ZNF384;nc|ENSG00000126746|Q8TF68-2|ZNF384;nc|ENSG00000126746|Q8TF68|ZNF384;ENSG00000126746|ENST00000683879|ZNF384	nc|ENSG00000126746|Q8TF68-3|ZNF384	nc|ENSG00000126746|Q8TF68-3|ZNF384	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3675153072999	1	672.367515	671.360239	0.72504	0.00048749	-0.84973	-0.00057133	-0.12469	-8.3838E-05	672.3663164066058	41.015	0.14417	41.022	40.902	41.046	0.0074959	1179	64	0.9112251	0.03857732	0.90970564	186.23438	0	7.884369						137	7	2	NaN	NaN	NaN	0.84945	1	2553	2553		0	0	1	14026			29302	2511	16904	17378	23391	23391					0.011413130833147989
VQAAWKRG	8	Unmodified	_VQAAWKRG_					0	0	0		nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6	nc|ENSG00000140479|P29122-3|PCSK6	nc|ENSG00000140479|P29122-3|PCSK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	915.5159108790001	1	915.515911	914.508634	1.4572	0.0013341	-2.4941	-0.0022834	-1.0369	-0.00094932	915.5133387858862	27.687	0.072376	27.677	27.653	27.726	-0.009552	339	43	1.4179583	0.024959445	1.4164388	288.25616	0	5.0739746						84	4	2	NaN	NaN	NaN	0.84207	1	6194	6194		3.5732	0.41988	1	7095			29303	3270	16905	17379	23392	23392					0.04796044057036397
VQAERNCLL	9	Unmodified	_VQAERNCLL_					0	0	0		ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2765834225	2	523.276583	1044.53861	1.0263	0.00053706	4.256	0.0022271	5.2824	0.0027641	523.2788810614993	31.138	0.072372	31.133	31.133	31.205	-0.0050716	1284	73	0.8468043	0.04422921	0.8452849	343.65244	0	17.949188						140	4	3	NaN	NaN	NaN	0.59509	1	10193	10193		5.6942	0.50528	1	20218			29304	6347	16906	17380	23393	23393					0.018126149400586655
VQAERNCLL	9	Unmodified						0	0	0		ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	ENST00000274629.8_1_5:169812453-169816345:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.276583	1044.53861	0.65817	0.0003444	4.332	0.0022668	4.9902	0.0026113	523.279149891558	31.163	0.07242	31.163	31.139	31.211	0	1287	76	0.8449601	0.04607457	0.8449601	342.90402		18.69809	0.015107	4.2159E-05	-0.00016237	NaN	5.6942	124	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17523			29305	6347	16906	17380							0.018126149400586655
VQAESFPTPM	10	Unmodified	_VQAESFPTPM_					0	0	0			REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF	REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5186725749	1	1106.51867	1105.5114	0.89774	0.00099337	-5.888	-0.0065152	-4.9903	-0.0055218	1106.5129629368234	31.404	0.21719	31.404	31.308	31.525	0	105	61	1.5564433	0.035354853	1.5564433	315.59692	0	7.1688232						169	10	2	NaN	NaN	NaN	0.56921	1	13071	13071		16.584	2.5426	1	15747	+		29306	10959	16907	17381	23394	23394					-0.03713913390970447
VQAESFPTPM	10	Unmodified						0	0	0			REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF	REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1106.51867	1105.5114	0.89774	0.00099337	-5.888	-0.0065152	-4.9903	-0.0055218	1106.5129629368234	31.404	0.21719	31.404	31.308	31.525	0	105	61	1.5564433	0.035354853	1.5564433	315.59692		7.1688232	0	0	0	NaN	16.584	169	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15747	+		29307	10959	16907	17381							-0.03713913390970447
VQAETNRL	8	Unmodified	_VQAETNRL_					0	0	0			REV__nc|ENSG00000182253|O15061-2|SYNM	REV__nc|ENSG00000182253|O15061-2|SYNM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5003203943	1	930.50032	929.493044	1.6145	0.0015023	-10.663	-0.0099224	-9.049	-0.0084201	930.4907481598963	20.766	0.12048	20.766	20.718	20.838	0	330	46	1.4233059	0.026732326	1.4233059	289.27414	0	5.4331055						106	6	2	NaN	NaN	NaN	0.57691	1	6594	6594		26.732	0	1	10456	+		29308	10864	16908	17382	23395	23395					0.025477127493331864
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3;PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.29275641545	2	556.292756	1110.57096	1.4358	0.0007987	-1.2986	-0.00072239	0.13718	7.6312E-05	556.2920569670765	20.188	0.096239	20.174	20.15	20.246	-0.014141	1230	61	0.8799654	0.036793947	0.878446	356.83362	0	14.920258						129	5	2	NaN	NaN	NaN	0.054111	1	12929	12929		45.165	20.204	1	27562			29309	878	16909	17383	23396	23396					0.020097256146982545
VQCLRSIW	8	Unmodified	_VQCLRSIW_					0	0	0			REV__ENST00000335174.5_1_4:186320768-186320810:+|nuORF	REV__ENST00000335174.5_1_4:186320768-186320810:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5345974106	1	1004.5346	1003.52732	1.7589	0.0017669	6.2056	0.0062338	7.9646	0.0080007	1004.5411292319836	29.038	0.24134	29.031	28.958	29.2	-0.0077229	216	148	1.4908947	0.087056875	1.4893752	302.68436	0	17.674438						814	11	4	NaN	NaN	NaN	0.30832	1	8561	8561		41.46	3.3292	1	286200	+		29310	11758	16910	17384	23397	23397					0.025698376365767217
VQCSACDC	8	Unmodified	_VQCSACDC_					0	0	0			REV__ENST00000492143.5_1_7:148504740-148513906:-|nuORF	REV__ENST00000492143.5_1_7:148504740-148513906:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.2684712436	1	828.268471	827.261195	1.1412	0.0009452	-3.1507	-0.0026096	-2.0095	-0.0016644	828.2664653774735	33.238	0.28961	33.238	33.142	33.431	0	561	52	1.2855089	0.03054297	1.2855089	261.7389	0	6.21875						180	13	2	NaN	NaN	NaN	0.84692	1	5107	5107		1.4396	0	1	13380	+		29311	12471	16911	17385	23398	23398					-0.1593453725974996
VQDQHECILPF	11	Unmodified	_VQDQHECILPF_					0	0	0		nc|ENSG00000159374|Q8TC57-2|M1AP;nc|ENSG00000159374|Q8TC57-4|M1AP;ENSG00000159374|ENST00000421985|M1AP	nc|ENSG00000159374|Q8TC57-2|M1AP	nc|ENSG00000159374|Q8TC57-2|M1AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.81881237795	2	664.818812	1327.62307	1.4084	0.00093636	2.0485	0.0013619	3.4569	0.0022982	664.8205162229046	32.996	0.096394	32.993	32.969	33.066	-0.0024757	1137	82	0.9369253	0.04948193	0.93540585	379.16895	0	20.025085						361	5	4	NaN	NaN	NaN	0.50669	1	18360	18360		18.233	1.3752	1	45177			29312	4024	16912	17386	23399	23399					-0.027634790338424864
VQDSYVLRCIP	11	Unmodified	_VQDSYVLRCIP_					0	0	0		tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8370051311001	2	646.837005	1291.65946	1.4173	0.00091674	7.237	0.0046811	8.6542	0.0055979	646.8415282492339	27.47	0.072376	27.46	27.436	27.508	-0.0095501	1119	64	0.9479278	0.038481772	0.94640833	383.73157	0	15.57785						92	4	2	NaN	NaN	NaN	0.65755	1	17790	17790		10.244	3.8138	1	11197			29313	13835	16913	17387	23400	23400					0.02529397862872429
VQEEAFRFLW	10	Unmodified	_VQEEAFRFLW_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.8378624108501	2	662.837862	1323.66117	2.019	0.0013383	4.7622	0.0031566	6.7812	0.0044949	663.3426680106858	22.645	0.072355	22.631	22.583	22.655	-0.01354	1095	34	0.9625867	0.020148396	0.96106726	389.56598	0	8.154205						81	4	3	NaN	NaN	NaN	0.6772	1	18295	18295		9.6116	0.69255	1	6199.6			29314	5267	16914	17388	23401	23401					0.01228774943137978
VQEEAFRFLW	10	Unmodified						0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	662.837862	1323.66117	1.7787	0.001179	8.1341	0.0053916	9.9128	0.0065705	662.8428334707836	22.766	0.12057	22.766	22.718	22.838	0	1092	34	0.9644182	0.020144105	0.9644182	390.3072		8.152466	0.067393	0.0020394	0.0016755	NaN	9.6116	109	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11004			29315	5267	16914	17388							0.01228774943137978
VQEPGAVL	8	Unmodified	_VQEPGAVL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4512449367002	1	812.451245	811.443968	2.0426	0.0016595	0.56764	0.00046118	2.6102	0.0021207	812.4531845124536	46.581	0.095833	46.581	46.509	46.605	0	309	37	1.435777	0.021371007	1.435777	292.42764	0	4.3526917						77	5	2	NaN	NaN	NaN	0.84897	1	4912	4912		0.27539	0	1	4597.6			29316	4508	16915	17389	23402	23402					0.03070424460383947
VQFHSLYEL	9	Unmodified	_VQFHSLYEL_					0	0	0			REV__ENST00000541340.5_1_11:73962668-73964552:+|nuORF	REV__ENST00000541340.5_1_11:73962668-73964552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2927564154501	2	568.292756	1134.57096	1.0778	0.00061253	2.7581	0.0015674	3.8359	0.0021799	568.2950665182639	21.152	0.14446	21.138	21.041	21.186	-0.014004	1257	55	0.86339295	0.033150375	0.8618735	350.02252	0	13.43927						101	7	2	NaN	NaN	NaN	0.12328	1	13802	13802		32.453	0	1	10293	+		29317	12699	16916	17390	23403	23403					0.009057256147116277
VQGQHGVE	8	Unmodified	_VQGQHGVE_					0	0	0			REV__ENST00000487486.5_1_22:30188501-30200764:-|nuORF	REV__ENST00000487486.5_1_22:30188501-30200764:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	853.4162564139001	1	853.416256	852.40898	1.8732	0.0015986	4.6913	0.0040036	6.5644	0.0056022	853.4203096006293	22.26	0.096487	22.26	22.236	22.332	0	396	49	1.3840506	0.028579712	1.3840506	281.6668	0	5.816223						87	5	2	NaN	NaN	NaN	0.82797	1	5416	5416		5.4659	0.55612	1	7914.3	+		29318	12433	16917	17391	23404	23404					-0.023128183475705555
VQGSSAKF	8	Unmodified	_VQGSSAKF_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-4|BANP	REV__nc|ENSG00000172530|Q8N9N5-4|BANP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	823.4308438456001	1	823.430844	822.423567	1.2679	0.001044	7.6777	0.0063221	8.9456	0.0073661	823.4375094535869	32.441	0.14484	32.438	32.39	32.534	-0.0031052	456	157	1.348284	0.0931617	1.3467646	274.54672	0	18.970245						587	7	4	NaN	NaN	NaN	0.528	1	4935	4935		29.598	2.8668	1	182520	+		29319	10656	16918	17392	23405	23405					0.005252538005720453
VQHREVQGFE	10	Unmodified	_VQHREVQGFE_					0	0	0		ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN;CON__Q3SX14	ENSG00000148180|ENST00000432226|GSN	ENSG00000148180|ENST00000432226|GSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.2071545546667	3	410.207155	1227.59963	1.6217	0.00066524	-9.2905	-0.003811	-7.6688	-0.0031458	410.20328088423867	24.092	0.12066	24.079	24.006	24.127	-0.012749	1467	28	0.7339432	0.016707659	0.7324238	445.90442	0	10.150665						64	6	2	NaN	NaN	NaN	0.62092	1	16492	16492		7.8039	5.0149	1	5205.2		+	29320	3621	16919	17393	23406	23406					-0.005061567561369884
VQITLNNVGA	10	Unmodified	_VQITLNNVGA_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5734853374	1	1028.57349	1027.56621	2.2751	0.0023401	-10.114	-0.010404	-7.8394	-0.0080634	1028.5638766184375	25.708	0.048235	25.708	25.684	25.732	0	204	49	1.4979934	0.028388977	1.4979934	304.0292	0	5.7617493						79	3	2	NaN	NaN	NaN	0.69717	1	9683	9683		8.2448	0.65722	1	7402.1	+		29321	9934	16920	17394	23407	23407					0.05352841471949432
VQITLNNVGA	10	Unmodified						0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1028.57349	1027.56621	2.2751	0.0023401	-10.114	-0.010404	-7.8394	-0.0080634	1028.5638766184375	25.708	0.048235	25.708	25.684	25.732	0	204	49	1.4979934	0.028388977	1.4979934	304.0292		5.7617493	0.0059448	0.00068001	-0.00012739	NaN	8.2448	79	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7402.1	+		29322	9934	16920	17394							0.05352841471949432
VQITLNNVGA	10	Unmodified						0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1028.57349	1027.56621	2.2122	0.0022754	-11.295	-0.011617	-9.0826	-0.0093421	1028.5617449396973	25.708	0.048252	25.696	25.672	25.721	-0.0116	201	52	1.4997677	0.03015852	1.4982482	304.38928		6.1209106	-0.0059448	-0.00053396	0.00012739	NaN	8.2448	74	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7337.6	+		29323	9934	16920	17394							0.05352841471949432
VQKAGGGG	8	Unmodified	_VQKAGGGG_					0	0	0			REV__nc|ENSG00000101746|O94818-2|NOL4	REV__nc|ENSG00000101746|O94818-2|NOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3627642804001	1	673.362764	672.355488	0.37651	0.00025353	5.56	0.0037439	5.9365	0.0039974	673.3660918952928	35.192	0.096527	35.192	35.192	35.289	0	753	40	1.1701111	0.023519278	1.1701111	239.13788	0	4.8066864						88	5	2	NaN	NaN	NaN	0.84945	1	2653	2653		0	0	1	8975.3	+		29324	8865	16921	17395	23408	23408					0.006204289405786767
VQKAGGGG	8	Unmodified	_VQKAGGGG_					0	0	0			REV__nc|ENSG00000101746|O94818-2|NOL4	REV__nc|ENSG00000101746|O94818-2|NOL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	673.3627642804001	1	673.362764	672.355488	0.86136	0.00058001	6.337	0.0042671	7.1983	0.0048471	673.3673882794515	35.215	0.072395	35.215	35.191	35.263	-4.5776E-05	744	49	1.1755381	0.02893281	1.1740186	240.247	0	5.9130554						64	4	2	NaN	NaN	NaN	0.84945	1	2576	2576		0	0	1	6831.4	+		29325	8865	16921	17395	23409	23409					0.006204289405786767
VQKAGGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000101746|O94818-2|NOL4	REV__nc|ENSG00000101746|O94818-2|NOL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	673.362764	672.355488	0.37651	0.00025353	5.56	0.0037439	5.9365	0.0039974	673.3660918952928	35.192	0.096527	35.192	35.192	35.289	0	753	40	1.1701111	0.023519278	1.1701111	239.13788		4.8066864	-0.01134	-0.00018359	-0.0019538	NaN	0	88	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8975.3	+		29326	8865	16921	17395							0.006204289405786767
VQKAGGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000101746|O94818-2|NOL4	REV__nc|ENSG00000101746|O94818-2|NOL4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	673.362764	672.355488	0.86136	0.00058001	6.337	0.0042671	7.1983	0.0048471	673.3673882794515	35.215	0.072395	35.215	35.191	35.263	-4.5776E-05	744	49	1.1755381	0.02893281	1.1740186	240.247		5.9130554	0.01134	0.00033957	0.0019538	NaN	0	64	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6831.4	+		29327	8865	16921	17395							0.006204289405786767
VQKSPGDY	8	Unmodified	_VQKSPGDY_					0	0	0		ENSG00000157870|ENST00000419916|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	ENSG00000157870|ENST00000419916|PRXL2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	893.436323154	1	893.436323	892.429047	1.8934	0.0016916	-2.0766	-0.0018553	-0.18316	-0.00016365	893.4340121232162	54.524	0.16853	54.524	54.476	54.644	0	351	73	1.4108255	0.04281497	1.4108255	286.91135	0	8.707001						324	8	4	NaN	NaN	NaN	0.84455	1	5954	5954		2.7852	0	1	35795			29328	3973	16922	17396	23410	23410					-0.021470674076226715
VQLFSAGIAAC	11	Unmodified	_VQLFSAGIAAC_					0	0	0		ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	540.2813344494001	2	540.281334	1078.54812	1.108	0.00059865	-10.836	-0.0058545	-9.7279	-0.0052558	540.2755408082523	34.492	0.12061	34.491	34.467	34.587	-0.0006485	1266	55	0.85786515	0.033171892	0.8563457	347.99838	0	13.45636						161	6	3	NaN	NaN	NaN	0.64343	1	11606	11606		11.17	0.56537	1	17232			29329	1721	16923	17397	23411	23411					0.011983832255964444
VQLFSAGIAAC	11	Unmodified						0	0	0		ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.281334	1078.54812	1.6777	0.00090642	-13.033	-0.0070413	-11.355	-0.0061349	540.2742369677409	34.493	0.096542	34.493	34.469	34.565	0	1269	64	0.8560222	0.038702607	0.8560222	347.2508		15.699951	0.00095991	-0.0014727	-0.00016177	NaN	11.17	140	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17043			29330	1721	16923	17397							0.011983832255964444
VQLGPGPV	8	Unmodified	_VQLGPGPV_					0	0	0		ENST00000507205.5_1_16:89759738-89759876:+|nuORF;ENST00000505733.5_1_16:89758861-89762180:+|nuORF	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	ENST00000507205.5_1_16:89759738-89759876:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	766.4457656283001	1	766.445766	765.438489	2.2932	0.0017576	5.5442	0.0042493	7.8374	0.0060069	766.4505065638957	36.372	0.28912	36.374	36.302	36.591	0.0016747	510	190	1.316029	0.113104105	1.3145095	268.30627	0	23.059189						976	13	4	NaN	NaN	NaN	0.69631	1	4219	4219		19.285	4.2718	1	417790			29331	7331	16924	17398	23412	23412					0.046387456685692996
VQLPQQLSALP	11	Unmodified	_VQLPQQLSALP_					0	0	0		nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	nc|ENSG00000063169|Q9NZM4-2|BICRA	nc|ENSG00000063169|Q9NZM4-2|BICRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3480629564	2	597.348063	1192.68157	1.6758	0.001001	2.1414	0.0012792	3.8172	0.0022802	597.3491252726344	23.296	0.16877	23.296	23.248	23.417	0	1167	43	0.91857195	0.025708497	0.91857195	372.17438	0	10.416229						196	8	4	NaN	NaN	NaN	0.6875	1	16237	16237		8.2775	0.68994	1	33530			29332	657	16925	17399	23413	23413					0.0929394560291712
VQNKERQVSC	10	Unmodified	_VQNKERQVSC_					0	0	0			REV__ENST00000472310.5_1_4:110585526-110603779:+|nuORF	REV__ENST00000472310.5_1_4:110585526-110603779:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.8009539758001	2	595.800954	1189.58736	1.0986	0.00065456	4.0823	0.0024322	5.1809	0.0030868	595.8043742114897	27.495	0.072433	27.495	27.495	27.567	0	1167	61	0.91857195	0.036734402	0.91857195	372.18542	0	14.883972						118	4	3	NaN	NaN	NaN	0.65442	1	16144	16144		11.17	1.5587	1	17657	+		29333	12329	16926	17400	23414	23414					0.0001448350917598873
VQPEPGAA	8	Unmodified	_VQPEPGAA_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	768.3886446799	1	768.388645	767.381368	1.8039	0.0013861	-1.0099	-0.00077596	0.79404	0.00061013	768.3877148407882	22.212	0.096449	22.212	22.187	22.284	0	1302	76	0.8357362	0.046159327	0.8357362	170.37871	0	9.410355						172	5	3	NaN	NaN	NaN	0.84897	1	4320	4320		0.27539	0	1	24666			29334	1790	16927	17401	23415	23415					-0.011627216078068159
VQPGGGGG	8	Unmodified	_VQPGGGGG_					0	0	0			REV__ENSG00000120709|ENST00000239906|FAM53C	REV__ENSG00000120709|ENST00000239906|FAM53C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	314.65609575855007	2	314.656096	627.297639	1.8156	0.0005713	-0.26864	-8.453E-05	1.547	0.00048677	314.6566156886131	55.893	0.096066	55.893	55.869	55.965	0	1545	40	0.68561107	0.02419895	0.68561107	280.63083	0	9.904968						72	5	2	NaN	NaN	NaN	0.84945	1	1340	1340		0	0	1	7120.6	+		29335	9320	16928	17402	23416	23416					-0.03091832984841858
VQPGGGGG	8	Unmodified						0	0	0			REV__ENSG00000120709|ENST00000239906|FAM53C	REV__ENSG00000120709|ENST00000239906|FAM53C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	314.656096	627.297639	1.8156	0.0005713	-0.26864	-8.453E-05	1.547	0.00048677	314.6566156886131	55.893	0.096066	55.893	55.869	55.965	0	1545	40	0.68561107	0.02419895	0.68561107	280.63083		9.904968	0.001427	0.00010677	0.00075972	NaN	0	72	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7120.6	+		29336	9320	16928	17402							-0.03091832984841858
VQPGGGGG	8	Unmodified						0	0	0			REV__ENSG00000120709|ENST00000239906|FAM53C	REV__ENSG00000120709|ENST00000239906|FAM53C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	314.656096	627.297639	0.1292	4.0655E-05	-0.53886	-0.00016956	-0.40966	-0.0001289	314.65655680076867	55.891	0.072014	55.89	55.866	55.938	-0.00059128	1545	43	0.68561107	0.026061833	0.6840916	280.63083		10.66748	-0.001427	-6.3282E-05	-0.00075972	NaN	0	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6823.9	+		29337	9320	16928	17402							-0.03091832984841858
VQPLLGKG	8	Unmodified	_VQPLLGKG_					0	0	0		nc|ENSG00000163218|Q96LB8-2|PGLYRP4;ENSG00000163218|ENST00000359650|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	811.5036148582002	1	811.503615	810.496338	2.044	0.0016587	0.69173	0.00056134	2.7358	0.0022201	811.5034670174742	56.181	0.1919	56.181	56.085	56.277	0	405	76	1.3786905	0.04469633	1.3786905	280.80618	0	9.103546						196	9	2	NaN	NaN	NaN	0.84692	1	4904	4904		1.4396	0	1	16200			29338	4212	16929	17403	23417	23417					0.08351007594001203
VQPLLGKG	8	Unmodified	_VQPLLGKG_					0	0	0		nc|ENSG00000163218|Q96LB8-2|PGLYRP4;ENSG00000163218|ENST00000359650|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	811.5036148582002	1	811.503615	810.496338	-0.19876	-0.00016129	4.0278	0.0032686	3.829	0.0031073	811.5054702746264	56.155	0.19208	56.154	56.058	56.25	-0.00056458	405	73	1.3786905	0.042901635	1.377171	280.80615	0	8.738007						244	9	2	NaN	NaN	NaN	0.84692	1	4804	4804		1.4396	0	1	19546			29339	4212	16929	17403	23418	23418					0.08351007594001203
VQPPHLFLW	9	Unmodified	_VQPPHLFLW_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.8162017220001	2	568.816202	1135.61785	0.99582	0.00056644	-6.7157	-0.00382	-5.7199	-0.0032535	568.8121669514863	30.366	0.26541	30.359	30.214	30.48	-0.0064106	1179	94	0.9112251	0.056984484	0.90970564	369.4098	0	23.10144						591	12	4	NaN	NaN	NaN	0.22308	1	13840	13840		23.85	7.2663	1	110600			29340	4930	16930	17404	23419	23419					0.055466299565068766
VQPPVELFVDW	11	Unmodified	_VQPPVELFVDW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8478957809001	2	664.847896	1327.68124	1.506	0.0010012	-1.9047	-0.0012663	-0.39868	-0.00026506	664.8460184144858	36.374	0.072319	36.374	36.35	36.422	0	1143	55	0.9332562	0.033007503	0.9332562	377.68393	0	13.357941						84	4	2	NaN	NaN	NaN	0.61402	1	19227	19227		13.101	6.6712	1	4954.8			29341	3379	16931	17405	23420	23420					0.030505258830999082
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.8323831024501	2	586.832383	1171.65021	2.1216	0.001245	-1.8039	-0.0010586	0.31777	0.00018648	586.831400117396	29.112	0.26546	29.112	29.015	29.28	0	1158	70	0.92408	0.04223311	0.92408	374.4829	0	17.11496						625	12	4	NaN	NaN	NaN	0.0047854	1	15550	15550		103.03	55.024	1	583700			29342	642	16932	17406	23421	23421					0.07125417359520725
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.8323831024501	2	586.832383	1171.65021	1.7097	0.0010033	-1.2588	-0.00073871	0.45091	0.00026461	586.831576009796	29.159	0.24135	29.151	29.055	29.296	-0.0077209	1158	67	0.92408	0.040394723	0.9225606	374.4829	0	16.369934						697	11	5	NaN	NaN	NaN	0.00050979	1	15003	15003		115.51	60.096	1	578190			29343	642	16932	17406	23422	23422					0.07125417359520725
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.3509399963501	2	622.35094	1242.68733	1.5717	0.00097817	-3.1169	-0.0019398	-1.5452	-0.00096164	622.3491167740425	28.75	0.1931	28.75	28.677	28.87	0	1134	64	0.9387595	0.03851497	0.9387595	380.17862	0	15.597778						278	9	3	NaN	NaN	NaN	0.24484	1	17604	17604		31.675	18.212	1	118920			29344	642	16933	17407	23423	23423					0.07569088905279386
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.3509399963501	2	622.35094	1242.68733	0.86652	0.00053928	-1.1146	-0.00069365	-0.24805	-0.00015438	622.3502797989827	28.773	0.2896	28.765	28.692	28.982	-0.0083504	1134	55	0.9387595	0.03301108	0.93724006	380.17862	0	13.368805						405	13	4	NaN	NaN	NaN	0.20271	1	16862	16862		35.296	20.871	1	124350			29345	642	16933	17407	23424	23424					0.07569088905279386
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.803291312	2	559.803291	1117.59203	1.9397	0.0010859	-1.3679	-0.00076576	0.57182	0.0003201	559.8023837712918	17.834	0.21583	17.82	17.724	17.94	-0.013786	1233	94	0.87812483	0.05702144	0.8766054	356.0598	0	23.12088						496	10	3	NaN	NaN	NaN	0.1507	1	13185	13185		39.459	20.295	1	75950			29346	5075	16934	17408	23425	23425					0.03793735714225477
VQPSKYHFLF	10	Unmodified	_VQPSKYHFLF_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3374982701	2	633.337498	1264.66044	1.7437	0.0011044	-4.1821	-0.0026487	-2.4384	-0.0015443	633.3348434580397	22.477	0.048124	22.477	22.453	22.501	0	1083	46	0.9699114	0.027466238	0.9699114	392.7195	0	11.121155						75	3	3	NaN	NaN	NaN	0.72631	1	18098	18098		6.2502	1.5211	1	5972.4			29347	5075	16935	17409	23426	23426					0.038699802940755035
VQPSKYHFLF	10	Unmodified	_VQPSKYHFLF_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.5607576689333	3	422.560758	1264.66044	1.532	0.00064736	-1.4801	-0.00062543	0.051909	2.1935E-05	422.5597366190716	22.477	0.072247	22.477	22.453	22.525	0	1443	37	0.7487872	0.022256374	0.7487872	454.77475	0	13.5173645						64	4	2	NaN	NaN	NaN	0.74182	1	18100	18100		2.4611	0.61094	1	7907.8			29348	5075	16935	17409	23427	23427					0.038699802940755035
VQPSKYHFLF	10	Unmodified						0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	422.560758	1264.66044	2.3883	0.0010092	-5.7051	-0.0024107	-3.3168	-0.0014015	422.89147971129677	22.669	0.04826	22.655	22.655	22.704	-0.01354	1440	22	0.7506418	0.012983561	0.7491224	455.90115		7.885559	0.089378	-0.0032708	0.00016758	NaN	2.4611	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1886.9			29349	5075	16935	17409							0.038699802940755035
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2978417933501	2	552.297842	1102.58113	2.0594	0.0011374	-1.9741	-0.0010903	0.085346	4.7136E-05	552.2969145894757	25.732	0.26539	25.732	25.684	25.95	0	1179	85	0.9112251	0.051472604	0.9112251	369.5425	0	20.87445						523	12	4	NaN	NaN	NaN	0.098515	1	12953	12953		36.036	9.3048	1	210290			29350	3387	16936	17410	23428	23428					0.03394333339952027
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.2978417933501	2	552.297842	1102.58113	2.3568	0.0013017	-3.9072	-0.002158	-1.5504	-0.00085631	552.2970181912093	25.756	0.26548	25.745	25.696	25.962	-0.0116	1179	97	0.9112251	0.05883217	0.90970564	369.5425	0	23.85907						656	12	4	NaN	NaN	NaN	0.098515	1	12614	12614		36.036	16.873	1	235000			29351	3387	16936	17410	23429	23429					0.03394333339952027
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.76128911154996	2	493.761289	985.508025	2.1385	0.0010559	-1.6414	-0.00081048	0.49708	0.00024544	493.76058902868607	22.212	0.31332	22.212	22.187	22.501	0	1302	115	0.8357362	0.07015091	0.8357362	339.42496	0	28.491028						545	14	5	NaN	NaN	NaN	0.048656	1	8063	8063		47.482	2.8431	1	246580			29352	7688	16937	17411	23430	23430					0.014691598266608707
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5153017565	1	986.515302	985.508025	2.3172	0.002286	-0.86276	-0.00085113	1.4545	0.0014349	986.5140736303737	22.212	0.19296	22.212	22.187	22.38	0	276	100	1.4553556	0.058711052	1.4553556	295.5424	0	11.922607						397	9	4	NaN	NaN	NaN	0.012861	1	8064	8064		84.233	36.23	1	104430			29353	7688	16937	17411	23431	23431					0.014691598266608707
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.76128911154996	2	493.761289	985.508025	1.0695	0.00052806	-0.93109	-0.00045973	0.13838	6.8329E-05	493.76098687267466	22.235	0.19283	22.222	22.173	22.366	-0.013731	1302	97	0.8357362	0.0590744	0.8342168	339.42496	0	23.992401						515	9	4	NaN	NaN	NaN	0.024221	1	7891	7891		66.656	13.898	1	220070			29354	7688	16937	17411	23432	23432					0.014691598266608707
VQPTQDVIS	9	Unmodified	_VQPTQDVIS_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	986.5153017565	1	986.515302	985.508025	1.6368	0.0016147	-0.77205	-0.00076164	0.86471	0.00085305	986.5146273699307	22.211	0.21688	22.197	22.173	22.39	-0.013731	276	100	1.4553556	0.058698654	1.4538362	295.5424	0	11.920044						443	10	4	NaN	NaN	NaN	0.02857	1	7892	7892		60.982	2.782	1	115370			29355	7688	16937	17411	23433	23433					0.014691598266608707
VQQAPAGP	8	Unmodified	_VQQAPAGP_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.20595278085	2	384.205953	766.397353	1.8992	0.00072968	-5.4131	-0.0020797	-3.5139	-0.00135	384.203948282369	26.239	0.12066	26.239	26.215	26.336	0	1437	49	0.7524962	0.029671907	0.7524962	306.81757	0	12.098206						79	6	2	NaN	NaN	NaN	0.84692	1	4305	4305		1.4396	0	1	7316	+		29356	10604	16938	17412	23434	23434					0.004809846290982023
VQQCRSRP	8	Unmodified	_VQQCRSRP_					0	0	0			REV__MLT1B_dup3873|chr3:196322226-196322526:-|2.403722863292409|0.2716452758455918|3.15|516.0|15|2|anti-sense	REV__MLT1B_dup3873|chr3:196322226-196322526:-|2.403722863292409|0.2716452758455918|3.15|516.0|15|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.2534426772	2	487.253443	972.492332	1.074	0.00052331	-5.7815	-0.002817	-4.7075	-0.0022937	487.25040034686464	12.748	0.14414	12.748	12.7	12.844	0	1395	64	0.7784366	0.03886217	0.7784366	316.21158	0	15.786346						111	7	2	NaN	NaN	NaN	0.75561	1	7676	7676		15.175	1.1338	1	8971.9	+		29357	12609	16939	17413	23435	23435					0.004985948286275743
VQQWQPDVE	9	Unmodified	_VQQWQPDVE_					0	0	0		NDUFS2|p.R35Q|1|0.35|ENSG00000158864|chr1:161203445-161203445|G/A|missense_variant	NDUFS2|p.R35Q|1|0.35|ENSG00000158864|chr1:161203445-161203445|G/A|missense_variant	NDUFS2|p.R35Q|1|0.35|ENSG00000158864|chr1:161203445-161203445|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.7696454599001	2	564.769645	1127.52474	1.4513	0.00081963	-0.87414	-0.00049369	0.57712	0.00032594	564.7691619713498	19.37	0.048021	19.356	19.332	19.38	-0.014141	1239	49	0.87444305	0.029460669	0.8729236	354.52887	0	11.944336						105	3	4	NaN	NaN	NaN	0.23112	1	13549	13549		23.334	1.5634	1	15236			29358	8074	16940	17414	23436	23436					-0.03392339287370305
VQRHLYVFVA	10	Unmodified	_VQRHLYVFVA_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.2363854864333	3	411.236385	1230.68733	1.3935	0.00057304	6.5746	0.0027037	7.9681	0.0032768	411.238783826726	15.174	0.04808	15.174	15.15	15.198	0	1419	40	0.76361835	0.02408886	0.76361835	463.9204	0	14.634674						56	3	2	NaN	NaN	NaN	0.77832	1	17284	17284		0.28709	0	1	4952.1	+		29359	11045	16941	17415	23437	23437					0.08121088905249962
VQSLPCFSL	9	Unmodified	_VQSLPCFSL_					0	0	0		ENST00000379441.7_1_12:56991800-56991959:-|nuORF	ENST00000379441.7_1_12:56991800-56991959:-|nuORF	ENST00000379441.7_1_12:56991800-56991959:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.25732803684997	2	497.257328	992.500103	1.7958	0.00089297	-2.49	-0.0012382	-0.69423	-0.00034521	497.25629521991385	25.636	0.072378	25.624	25.552	25.624	-0.0116	1311	61	0.83019954	0.036937475	0.8286801	337.1436	0	15.000275						73	4	2	NaN	NaN	NaN	0.40649	1	8145	8145		13.463	0.89334	1	7796.3			29360	6722	16942	17416	23438	23438					0.00355309305530227
VQSSSVKFHSH	11	Unmodified	_VQSSSVKFHSH_					0	0	0		ENST00000512791.1_1_4:145636196-145636656:+|nuORF	ENST00000512791.1_1_4:145636196-145636656:+|nuORF	ENST00000512791.1_1_4:145636196-145636656:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8149186308001	2	621.814919	1241.61528	1.5565	0.00096784	-7.7392	-0.0048123	-6.1827	-0.0038445	621.8102975762216	28.122	0.096529	28.122	28.05	28.146	0	1134	64	0.9387595	0.038523257	0.9387595	380.18225	0	15.601288						137	5	3	NaN	NaN	NaN	0.56282	1	17568	17568		16.226	2.2771	1	14353			29361	7361	16943	17417	23439	23439					0.004141297609066896
VQTLKEYLE	9	Unmodified	_VQTLKEYLE_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;RGPD2|p.S1721Rfs*7|1|0.18|ENSG00000185304|chr2:87772242-87772243|-/CT|frameshift_variant;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8056966152	2	561.805697	1121.59684	1.4664	0.00082386	-5.916	-0.0033236	-4.4495	-0.0024998	561.801675434131	19.515	0.072227	19.5	19.452	19.524	-0.014141	1224	58	0.883646	0.034963727	0.88212657	358.28296	0	14.176392						84	4	2	NaN	NaN	NaN	0.29341	1	13347	13347		16.584	0	1	25095			29362	3801;444	16944	17418	23440	23440					0.040905750663114304
VQVAVKHL	8	Unmodified	_VQVAVKHL_					0	0	0		RIPK2|p.S214Ifs*26|1|0.21|ENSG00000104312|chr8:89769919-89769920|-/AT|frameshift_variant;ENSG00000104312|ENST00000220751|RIPK2	RIPK2|p.S214Ifs*26|1|0.21|ENSG00000104312|chr8:89769919-89769920|-/AT|frameshift_variant	RIPK2|p.S214Ifs*26|1|0.21|ENSG00000104312|chr8:89769919-89769920|-/AT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.28199476390006	2	447.281995	892.549437	1.2087	0.00054061	0.46734	0.00020903	1.676	0.00074964	447.28185569401575	55.845	0.048023	55.845	55.821	55.869	0	1239	37	0.87444305	0.022093058	0.87444305	355.65393	0	8.985718						49	3	2	NaN	NaN	NaN	0.84876	1	5962	5962		0.39566	0	1	5588			29363	1467	16945	17419	23441	23441					0.098863853766602
VQVGHAGS	8	Unmodified	_VQVGHAGS_					0	0	0			REV__ENSG00000089597|ENST00000356638|GANAB	REV__ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	754.3842280040001	1	754.384228	753.376952	1.8453	0.0013921	-8.1218	-0.0061269	-6.2765	-0.0047349	754.3777965081307	20.213	0.14445	20.198	20.126	20.271	-0.014141	579	61	1.2747238	0.035977006	1.2732043	259.9585	0	7.3368835						125	7	2	NaN	NaN	NaN	0.74229	1	4044	4044		16.417	3.8288	1	8069.1	+		29364	8718	16946	17420	23442	23442					-0.00960186030715704
VQYKEETL	8	Unmodified	_VQYKEETL_					0	0	0			REV__ENST00000407982.6_1_9:125930502-125941310:-|nuORF	REV__ENST00000407982.6_1_9:125930502-125941310:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1009.5200527834	1	1009.52005	1008.51278	2.0337	0.002053	2.3462	0.0023686	4.3799	0.0044216	1009.5218065251327	26.288	0.14483	26.288	26.263	26.408	0	195	58	1.5033154	0.033706546	1.5033154	305.18564	0	6.8427124						146	7	2	NaN	NaN	NaN	0.3042	1	8924	8924		41.785	0	1	16087	+		29365	10373	16947	17421	23443	23443					0.008860439694331035
VQYNRCDI	8	Unmodified	_VQYNRCDI_					0	0	0		nc|ENSG00000078487|Q9H0M4-3|ZCWPW1;ENST00000490089.1_1_7:99998800-100014813:-|nuORF;nc|ENSG00000078487|Q9H0M4-2|ZCWPW1;nc|ENSG00000078487|Q9H0M4-4|ZCWPW1;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1;nc|ENSG00000078487|Q9H0M4|ZCWPW1;ENSG00000078487|ENST00000684423|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.73983377545	2	505.739834	1009.46511	1.7706	0.00089546	-4.6953	-0.0023746	-2.9247	-0.0014792	505.7372354101831	19.516	0.14401	19.516	19.492	19.636	0	1524	40	0.698637	0.024183095	0.698637	283.6509	0	9.818512						140	7	3	NaN	NaN	NaN	0.80692	1	8944	8944		8.2903	0.74991	1	12629			29366	884	16948	17422	23444	23444					-0.03923933502414911
VQYWEIQPSTF	11	Unmodified	_VQYWEIQPSTF_					0	0	0		nc|ENSG00000011465|P07585-4|DCN;nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN;ENSG00000011465|ENST00000052754|DCN	nc|ENSG00000011465|P07585-4|DCN	nc|ENSG00000011465|P07585-4|DCN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.34043488955	2	699.340435	1396.66632	1.1242	0.00078622	-1.7181	-0.0012015	-0.59383	-0.00041529	699.3381788093511	29.739	0.072378	29.739	29.715	29.787	0	1101	82	0.95892316	0.04941255	0.95892316	387.8737	0	19.986847						129	4	3	NaN	NaN	NaN	0.70497	1	20039	20039		7.1304	1.6804	1	9704.2			29367	410	16949	17423	23445	23445					-0.016149659849133968
VQYWEIQPSTF	11	Unmodified						0	0	0		nc|ENSG00000011465|P07585-4|DCN;nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN;ENSG00000011465|ENST00000052754|DCN	nc|ENSG00000011465|P07585-4|DCN	nc|ENSG00000011465|P07585-4|DCN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	699.340435	1396.66632	0.83435	0.00058349	-0.7329	-0.00051255	0.10144	7.0943E-05	699.3399503756184	29.714	0.048285	29.707	29.707	29.755	-0.0070648	1095	58	0.9625867	0.03478682	0.96106726	389.35556		14.070892	-0.01604	0.00071427	0.0010721	NaN	7.1304	97	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8266.9			29368	410	16949	17423							-0.016149659849133968
VRAAIAAA	8	Unmodified	_VRAAIAAA_					0	0	0			REV__ENSG00000134259|ENST00000369512|NGF	REV__ENSG00000134259|ENST00000369512|NGF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.4569990165999	1	742.456999	741.449723	1.1677	0.00086696	-3.9028	-0.0028976	-2.7351	-0.0020307	742.4568937947448	54.186	0.047928	54.185	54.161	54.209	-0.00061798	570	34	1.2801172	0.019771576	1.2785977	261.13342	0	4.033203						35	3	2	NaN	NaN	NaN	0.84945	1	3863	3863		0	0	1	1822.6	+		29369	9584	16950	17424	23446	23446					0.06865567762679348
VRAGQSRV	8	Unmodified	_VRAGQSRV_					0	0	0		ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	ENST00000493544.1_1_2:242054361-242072488:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.7566754704	2	436.756675	871.498798	0.82606	0.00036079	-2.4292	-0.001061	-1.6031	-0.00070017	436.75630369057393	43.585	0.16798	43.585	43.513	43.681	0	1407	34	0.77102906	0.02037406	0.77102906	313.70807	0	8.289581						103	8	2	NaN	NaN	NaN	0.84756	1	5680	5680		1.072	0	1	8581			29370	7277	16951	17425	23447	23447					0.05790856051658011
VRARAPGA	8	Unmodified	_VRARAPGA_					0	0	0		ENST00000520728.5_1_8:94929177-94934336:+|nuORF	ENST00000520728.5_1_8:94929177-94934336:+|nuORF	ENST00000520728.5_1_8:94929177-94934336:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.4740460643001	1	797.474046	796.46677	-0.16045	-0.00012795	-3.7406	-0.002983	-3.9011	-0.003111	797.4708140414215	56.803	0.1442	56.802	56.73	56.874	-0.00056458	489	61	1.3285799	0.035842776	1.3270605	270.6793	0	7.3024597						139	7	2	NaN	NaN	NaN	0.84887	1	4623	4623		0.32989	0	1	13130			29371	7395	16952	17426	23448	23448					0.06039488368514867
VRAVPPTAI	9	Unmodified	_VRAVPPTAI_					0	0	0		nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-3|RBFOX2	nc|ENSG00000100320|O43251-3|RBFOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5672777475	1	923.567278	922.560001	1.8428	0.001702	-2.472	-0.0022831	-0.62918	-0.00058109	923.5647291782504	55.821	0.048061	55.821	55.797	55.845	0	291	61	1.446459	0.03559947	1.446459	294.01202	0	7.236084						72	3	2	NaN	NaN	NaN	0.62619	1	6456	6456		4.4131	0	1	7608.1			29372	1223	16953	17427	23449	23449					0.09562368031083679
VRAVQGVS	8	Unmodified	_VRAVQGVS_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.4733773623002	1	815.473377	814.466101	2.1619	0.001763	4.2272	0.0034472	6.3891	0.0052101	815.4762120532703	56.493	0.095955	56.493	56.445	56.541	0	477	40	1.3357477	0.023291588	1.3357477	272.03766	0	4.743561						69	5	2	NaN	NaN	NaN	0.84756	1	4947	4947		1.072	0	1	4417.6	+		29373	10737	16954	17428	23450	23450					0.05144648928819606
VRFWDSWR	8	Unmodified	_VRFWDSWR_					0	0	0		ENST00000303319.9_1_2:150444183-150444282:-|nuORF	ENST00000303319.9_1_2:150444183-150444282:-|nuORF	ENST00000303319.9_1_2:150444183-150444282:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2908824285	2	576.290882	1150.56721	0.98854	0.00056969	7.7348	0.0044575	8.7233	0.0050272	576.2952085954879	29.183	0.096571	29.175	29.151	29.248	-0.0077209	1188	88	0.90571284	0.053325295	0.9041934	367.11783	0	21.614685						175	5	2	NaN	NaN	NaN	0.84727	1	14327	14327		1.2418	0.31598	1	31315			29374	6416	16955	17429	23451	23451					-0.0020489936848662182
VRFWDSWR	8	Unmodified						0	0	0		ENST00000303319.9_1_2:150444183-150444282:-|nuORF	ENST00000303319.9_1_2:150444183-150444282:-|nuORF	ENST00000303319.9_1_2:150444183-150444282:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.290882	1150.56721	1.457	0.00083967	1.1313	0.00065198	2.5884	0.0014916	576.2919716236073	29.063	0.12065	29.063	29.063	29.184	0	1191	61	0.90387505	0.036770105	0.90387505	366.37292		14.904236	-0.056071	-0.0020251	-0.00015919	NaN	1.2418	131	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16415			29375	6416	16955	17429							-0.0020489936848662182
VRGAAGPGELP	11	Unmodified	_VRGAAGPGELP_					0	0	0			REV__ENST00000360864.8_1_20:62566104-62566302:+|nuORF	REV__ENST00000360864.8_1_20:62566104-62566302:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2827230454001	2	512.282723	1022.55089	1.7381	0.0008904	5.7331	0.002937	7.4712	0.0038274	512.2854774819389	24.502	0.16879	24.502	24.43	24.598	0	1284	73	0.8468043	0.044262707	0.8468043	343.74854	0	17.967834						256	8	2	NaN	NaN	NaN	0.6085	1	9466	9466		13.463	0.46021	1	84479	+		29376	11843	16956	17430	23452	23452					0.0405197467475773
VRGAAGPGELP	11	Unmodified						0	0	0			REV__ENST00000360864.8_1_20:62566104-62566302:+|nuORF	REV__ENST00000360864.8_1_20:62566104-62566302:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.282723	1022.55089	1.7381	0.0008904	5.7331	0.002937	7.4712	0.0038274	512.2854774819389	24.502	0.16879	24.502	24.43	24.598	0	1284	73	0.8468043	0.044262707	0.8468043	343.74854		17.967834	0	0	0	NaN	13.463	256	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84479	+		29377	11843	16956	17430							0.0405197467475773
VRGGGPAL	8	Unmodified	_VRGGGPAL_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-4|ARHGEF40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.4256988881999	1	726.425699	725.418422	1.451	0.0010541	-6.2543	-0.0045433	-4.8033	-0.0034892	726.420640262161	57.117	0.096127	57.117	57.117	57.213	0	396	49	1.3840506	0.028582692	1.3840506	282.44824	0	5.8329773						89	5	3	NaN	NaN	NaN	0.84945	1	3696	3696		0	0	1	9830.6	+		29378	10400	16957	17431	23453	23453					0.04472994728598678
VRGGQGGG	8	Unmodified	_VRGGQGGG_					0	0	0		ENST00000588912.1_1_19:10400815-10401250:+|nuORF	ENST00000588912.1_1_19:10400815-10401250:+|nuORF	ENST00000588912.1_1_19:10400815-10401250:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.3532622266002	1	687.353262	686.345986	2.2962	0.0015783	4.8265	0.0033175	7.1227	0.0048958	687.3572814733836	26.167	0.072411	26.156	26.083	26.156	-0.011135	1077	43	0.9735726	0.025625527	0.9720532	198.89003	0	5.2350006						76	4	2	NaN	NaN	NaN	0.84945	1	2878	2878		0	0	1	6139.5			29379	7717	16958	17432	23454	23454					-0.009733393449437244
VRGGSGGG	8	Unmodified	_VRGGSGGG_					0	0	0			REV__nc|ENSG00000099308|O60307|MAST3	REV__nc|ENSG00000099308|O60307|MAST3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3267131251002	1	646.326713	645.319437	2.3423	0.0015139	5.711	0.0036912	8.0533	0.0052051	646.3294348494962	26.046	0.072414	26.046	26.022	26.094	0	789	43	1.1483859	0.025365114	1.1483859	234.89383	0	5.1882477						65	4	2	NaN	NaN	NaN	0.84945	1	1932	1932		0	0	1	4437.5	+		29380	8769	16959	17433	23455	23455					-0.01741028236267539
VRGGVVIV	8	Unmodified	_VRGGVVIV_					0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	798.5195992734002	1	798.519599	797.512323	-0.020857	-1.6654E-05	2.6688	0.0021311	2.648	0.0021145	798.5209475611274	56.203	0.047935	56.202	56.178	56.226	-0.00056458	453	61	1.3500742	0.03580463	1.3485547	275.0523	0	7.294525						72	3	2	NaN	NaN	NaN	0.84876	1	4639	4639		0.39566	0	1	7885.1	+		29381	10438	16960	17434	23456	23456					0.10546713830910903
VRGGVVIV	8	Unmodified						0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	798.519599	797.512323	1.9639	0.0015682	-0.047933	-3.8276E-05	1.9159	0.0015299	798.5188170031379	56.205	0.047939	56.205	56.181	56.229	0	453	55	1.3500742	0.032224298	1.3500742	275.05234		6.5650635	0.0012933	-0.0010999	0.00075972	NaN	0.39566	65	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7884.7	+		29382	10438	16960	17434							0.10546713830910903
VRGGVVIV	8	Unmodified						0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	798.519599	797.512323	-0.020857	-1.6654E-05	2.6688	0.0021311	2.648	0.0021145	798.5209475611274	56.203	0.047935	56.202	56.178	56.226	-0.00056458	453	61	1.3500742	0.03580463	1.3485547	275.0523		7.294525	-0.0012933	0.0010695	-0.00075972	NaN	0.39566	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7885.1	+		29383	10438	16960	17434							0.10546713830910903
VRGHPVWA	8	Unmodified	_VRGHPVWA_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.5053461927001	1	921.505346	920.49807	1.999	0.0018421	-3.1716	-0.0029227	-1.1726	-0.0010805	921.5020759459607	53.242	0.2161	53.242	53.194	53.41	0	243	124	1.4749115	0.0729053	1.4749115	299.8052	0	14.819489						543	10	4	NaN	NaN	NaN	0.84692	1	6419	6419		1.4396	0.19772	1	101540	+		29384	13211	16961	17435	23457	23457					0.03464061402610241
VRGYGGKG	8	Unmodified	_VRGYGGKG_					0	0	0			REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	793.4315125476003	1	793.431513	792.424236	1.9346	0.001535	2.6179	0.0020771	4.5525	0.0036121	793.4342118759461	55.797	0.072086	55.797	55.773	55.845	0	522	61	1.3088527	0.03589642	1.3088527	266.6832	0	7.314026						73	4	2	NaN	NaN	NaN	0.84945	1	4657	4657		0	0	1	7369.4	+		29385	8688	16962	17436	23458	23458					0.019720932402947255
VRIPLVGK	8	Unmodified	_VRIPLVGK_					0	0	0			REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	881.5930985675002	1	881.593099	880.585822	0.014443	1.2733E-05	-8.4102	-0.0074144	-8.3958	-0.0074017	881.5843827102967	57.955	0.072155	57.954	57.93	58.002	-0.00050735	318	46	1.4304334	0.026723742	1.428914	290.9583	0	5.4357605						56	4	2	NaN	NaN	NaN	0.84692	1	5692	5692		1.4396	0	1	4994.7	+		29386	11625	16963	17437	23459	23459					0.1407526227337712
VRIPLVGK	8	Unmodified						0	0	0			REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	881.593099	880.585822	1.8342	0.001617	-12.003	-0.010582	-10.169	-0.008965	881.5829470917415	57.981	0.12011	57.981	57.885	58.005	0	327	49	1.425088	0.028509855	1.425088	289.87103		5.7990723	0.013388	-0.00089555	-0.0019129	NaN	1.4396	90	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6193.9	+		29387	11625	16963	17437							0.1407526227337712
VRIPLVGK	8	Unmodified						0	0	0			REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	REV__ENST00000291041.5_1_16:67962406-67962595:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	881.593099	880.585822	0.014443	1.2733E-05	-8.4102	-0.0074144	-8.3958	-0.0074017	881.5843827102967	57.955	0.072155	57.954	57.93	58.002	-0.00050735	318	46	1.4304334	0.026723742	1.428914	290.9583		5.4357605	-0.013388	0.002272	0.0019129	NaN	1.4396	56	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4994.7	+		29388	11625	16963	17437							0.1407526227337712
VRKVPVRG	8	Unmodified	_VRKVPVRG_					0	0	0			REV__ENST00000449958.1_1_1:53833732-53833846:-|nuORF	REV__ENST00000449958.1_1_1:53833732-53833846:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	910.5944955510003	1	910.594496	909.587219	0.19509	0.00017765	0.55378	0.00050427	0.74887	0.00068192	910.5943733625508	55.242	0.024101	55.242	55.242	55.266	-0.00061798	270	52	1.458913	0.03023231	1.4573935	296.6056	0	6.146393						55	2	2	NaN	NaN	NaN	0.84945	1	6107	6107		0	0	1	6860.7	+		29389	12229	16964	17438	23460	23460					0.12880896362139538
VRLAGGGGG	9	Unmodified	_VRLAGGGGG_					0	0	0		ENST00000366878.8_1_1:223536770-223537465:-|nuORF	ENST00000366878.8_1_1:223536770-223537465:-|nuORF	ENST00000366878.8_1_1:223536770-223537465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	743.4158624834004	1	743.415862	742.408586	1.5924	0.0011838	4.1528	0.0030872	5.7451	0.004271	743.4188919476197	58.437	0.047962	58.437	58.413	58.461	0	375	70	1.3965509	0.041059256	1.3965509	284.87823	0	8.37558						93	3	2	NaN	NaN	NaN	0.6907	1	3956	3956		0	0	1	21223			29390	6617	16965	17439	23461	23461					0.027078067232650938
VRLAGGGGG	9	Unmodified	_VRLAGGGGG_					0	0	0		ENST00000366878.8_1_1:223536770-223537465:-|nuORF	ENST00000366878.8_1_1:223536770-223537465:-|nuORF	ENST00000366878.8_1_1:223536770-223537465:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.4158624834004	1	743.415862	742.408586	-0.2394	-0.00017797	4.7525	0.0035331	4.5131	0.0033551	743.4191996780639	58.434	0.047932	58.434	58.41	58.458	-0.00048447	372	127	1.3983358	0.075045824	1.3968164	285.24234	0	15.30838						112	3	2	NaN	NaN	NaN	0.6907	1	3875	3875		0	0	1	22230			29391	6617	16965	17439	23462	23462					0.027078067232650938
VRLGVAGG	8	Unmodified	_VRLGVAGG_					0	0	0		ENST00000217173.6_1_20:3104044-3140526:-|nuORF	ENST00000217173.6_1_20:3104044-3140526:-|nuORF	ENST00000217173.6_1_20:3104044-3140526:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	728.4413489524002	1	728.441349	727.434072	1.2728	0.00092717	1.4814	0.0010791	2.7542	0.0020063	728.4421813896249	27.566	0.072414	27.557	27.533	27.605	-0.009552	627	46	1.24593	0.027015924	1.2444105	254.24835	0	5.5129547						75	4	2	NaN	NaN	NaN	0.84876	1	3647	3647		0.39566	0	1	7651.9			29392	6229	16966	17440	23463	23463					0.05945281245669776
VRLGVAGG	8	Unmodified						0	0	0		ENST00000217173.6_1_20:3104044-3140526:-|nuORF	ENST00000217173.6_1_20:3104044-3140526:-|nuORF	ENST00000217173.6_1_20:3104044-3140526:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	728.441349	727.434072	1.2619	0.00091926	0.89958	0.00065529	2.1615	0.0015745	728.442624126543	27.567	0.072409	27.567	27.543	27.615	0	630	40	1.2441287	0.023413777	1.2441287	253.8808		4.777893	0.0051798	-0.00028526	-0.00014091	NaN	0.39566	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7264.6			29393	6229	16966	17440							0.05945281245669776
VRLPAGGG	8	Unmodified	_VRLPAGGG_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	REV__nc|ENSG00000106305|Q13155-2|AIMP2	REV__nc|ENSG00000106305|Q13155-2|AIMP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.4256988882003	1	726.425699	725.418422	1.1862	0.00086169	7.3305	0.0053251	8.5167	0.0061868	726.4310107766036	30.463	0.072372	30.463	30.439	30.511	0	651	43	1.2315145	0.025237799	1.2315145	251.31958	0	5.15036						83	4	2	NaN	NaN	NaN	0.84945	1	3697	3697		0	0	1	8392.6			29394	2825	16967	17441	23464	23464					0.04472994728632784
VRLQLQPQ	8	Unmodified	_VRLQLQPQ_					0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	981.5839904442001	1	981.58399	980.576714	1.6463	0.001616	-7.4572	-0.0073198	-5.8109	-0.0057039	981.5770975190471	29.208	0.072411	29.208	29.184	29.256	0	177	58	1.5139546	0.033681512	1.5139546	307.46356	0	6.840271						135	4	3	NaN	NaN	NaN	0.8439	1	7908	7908		3.1533	0	1	15993	+		29395	10134	16968	17442	23465	23465					0.08564868917039803
VRLQLQPQ	8	Unmodified						0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	981.58399	980.576714	1.6463	0.001616	-7.4572	-0.0073198	-5.8109	-0.0057039	981.5770975190471	29.208	0.072411	29.208	29.184	29.256	0	177	58	1.5139546	0.033681512	1.5139546	307.46356		6.840271	-0.0078234	-4.4586E-06	-0.0010127	NaN	3.1533	135	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15993	+		29396	10134	16968	17442							0.08564868917039803
VRLQLQPQ	8	Unmodified						0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	981.58399	980.576714	1.5127	0.0014849	-7.444	-0.0073069	-5.9313	-0.0058221	981.5768570315144	29.231	0.096518	29.224	29.2	29.296	-0.0077209	171	55	1.5174994	0.031903744	1.51598	308.18347		6.4792175	0.0078234	8.4598E-06	0.0010127	NaN	3.1533	115	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12046	+		29397	10134	16968	17442							0.08564868917039803
VRLYYKKAKRP	11	Unmodified	_VRLYYKKAKRP_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	REV__nc|ENSG00000138119|Q9NZM1-5|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	711.4406206709	2	711.440621	1420.86669	1.3823	0.00098341	-2.9526	-0.0021006	-1.5703	-0.0011172	711.439734765342	19.322	0.072096	19.308	19.284	19.356	-0.014141	1278	37	0.85049206	0.022121787	0.8489726	343.9571	0	8.946503						91	4	3	NaN	NaN	NaN	0.78074	1	19267	19267		0.11306	0	1	9639.6	+		29398	9715	16969	17443	23466	23466					0.17308973193189559
VRNHFYERCFK	11	Unmodified	_VRNHFYERCFK_					0	0	0		ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	749.87224493195	2	749.872245	1497.72994	1.5749	0.001181	-2.1585	-0.0016186	-0.58359	-0.00043762	749.870450915921	19.252	0.096077	19.252	19.228	19.324	0	1023	43	1.0064877	0.025575817	1.0064877	406.8436	0	10.338287						181	5	4	NaN	NaN	NaN	0.74794	1	20576	20576		4.3102	0.38204	1	22085			29399	3087	16970	17444	23467	23467					0.0009811597119551152
VRPASLNL	8	Unmodified	_VRPASLNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.26380201075	2	435.263802	868.513051	0.94841	0.00041281	-1.9822	-0.00086277	-1.0338	-0.00044996	435.2628604439975	14.549	0.095956	14.549	14.525	14.621	0	1479	37	0.72651637	0.022287786	0.72651637	295.61295	0	9.068695						83	5	2	NaN	NaN	NaN	0.75561	1	5649	5649		15.175	0	1	8102.3			29400	2092	16971	17445	23468	23468					0.07353508479945958
VRPNQSRG	8	Unmodified	_VRPNQSRG_					0	0	0			REV__nc|ENSG00000131686|P23280-2|CA6	REV__nc|ENSG00000131686|P23280-2|CA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.25175726800006	2	457.251757	912.488962	1.1234	0.00051366	-9.0322	-0.00413	-7.9089	-0.0036164	457.2475002091625	15.244	0.28799	15.232	15.088	15.376	-0.012201	1572	46	0.6688489	0.027949154	0.66732943	271.94452	0	11.363739						270	13	3	NaN	NaN	NaN	0.6053	1	6157	6157		24.961	7.162	1	40773	+		29401	13119	16972	17446	23469	23469					0.02921668046292325
VRPSCHFLI	9	Unmodified	_VRPSCHFLI_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.2920365214501	2	536.292037	1070.56952	1.7073	0.00091563	-5.3136	-0.0028496	-3.6062	-0.001934	536.2895533527601	21.368	0.072102	21.368	21.344	21.416	0	1242	37	0.87260187	0.022095501	0.87260187	354.00967	0	8.963989						82	4	2	NaN	NaN	NaN	0.49672	1	11587	11587		9.746	0.78402	1	10812	+		29402	8235	16973	17447	23470	23470					0.037058130449622695
VRPSCHFLI	9	Unmodified						0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.292037	1070.56952	1.7073	0.00091563	-5.3136	-0.0028496	-3.6062	-0.001934	536.2895533527601	21.368	0.072102	21.368	21.344	21.416	0	1242	37	0.87260187	0.022095501	0.87260187	354.00967		8.963989	-0.029104	0.00067694	-0.0029221	NaN	9.746	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10812	+		29403	8235	16973	17447							0.037058130449622695
VRPSCHFLI	9	Unmodified						0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|44	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.292037	1070.56952	2.5522	0.0013687	-7.3748	-0.003955	-4.8226	-0.0025863	536.2880526397989	21.44	0.048191	21.426	21.426	21.475	-0.014006	1230	28	0.8799654	0.016565382	0.878446	356.99704		6.720459	0.029104	-0.0015339	0.0029221	NaN	9.746	35	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1854	+		29404	8235	16973	17447							0.037058130449622695
VRSPPGQP	8	Unmodified	_VRSPPGQP_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	837.4577272981002	1	837.457727	836.450451	-0.60399	-0.00050581	4.033	0.0033775	3.429	0.0028717	837.4612825746086	56.035	0.071995	56.034	56.01	56.082	-0.00059128	459	76	1.3464937	0.044772625	1.3449743	274.10663	0	9.11438						119	4	2	NaN	NaN	NaN	0.82797	1	5097	5097		5.4659	0	1	15329			29405	13701	16974	17448	23471	23471					0.02568362411761882
VRSPPGQP	8	Unmodified						0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|11|1|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	837.457727	836.450451	1.7848	0.0014947	2.0572	0.0017228	3.842	0.0032175	837.4593872950169	56.037	0.04797	56.037	56.013	56.061	0	462	70	1.3447032	0.041199565	1.3447032	273.74213		8.386993	0.0013334	-0.00085622	-0.00013554	NaN	5.4659	114	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11443			29406	13701	16974	17448							0.02568362411761882
VRSRGGGK	8	Unmodified	_VRSRGGGK_					0	0	0		ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.7435680951501	2	408.743568	815.472583	1.5439	0.00063104	-1.307	-0.00053424	0.23683	9.6805E-05	408.7433764383137	22.477	0.072247	22.477	22.453	22.525	0	1344	31	0.8098828	0.018480718	0.8098828	329.86713	0	7.527252						50	4	2	NaN	NaN	NaN	0.84945	1	4963	4963		0	0	1	3550.7			29407	6788	16975	17449	23472	23472					0.05746586880206905
VRSRGGGK	8	Unmodified						0	0	0		ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	408.743568	815.472583	1.6896	0.00069062	0.99222	0.00040556	2.6818	0.0010962	408.74478550602544	22.476	0.04817	22.462	22.438	22.486	-0.013733	1341	34	0.8117308	0.020325482	0.81021136	330.6198		8.2786255	-0.0072005	0.0012962	0.00016427	NaN	0	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3683.2			29408	6788	16975	17449							0.05746586880206905
VRVEPHFAH	9	Unmodified	_VRVEPHFAH_					0	0	0			REV__ENST00000588896.1_1_12:1904311-1905086:-|nuORF	REV__ENST00000588896.1_1_12:1904311-1905086:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5744883904001	1	1091.57449	1090.56721	1.0383	0.0011334	1.6416	0.0017919	2.6799	0.0029253	1091.5760812746666	35.432	0.072201	35.433	35.385	35.457	0.00052643	63	49	1.5811787	0.028253913	1.5796592	320.6666	0	5.7299805						77	4	2	NaN	NaN	NaN	0.66196	1	12119	12119		2.4615	1.2197	1	5262.1	+		29409	12903	16976	17450	23473	23473					0.0255510063152542
VRVGALLL	8	Unmodified	_VRVGALLL_					0	0	0		ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.5665494660003	1	840.566549	839.559273	1.7432	0.0014652	1.609	0.0013524	3.3521	0.0028177	840.5677420579887	58.197	0.023983	58.197	58.173	58.197	0	363	46	1.4036897	0.026763558	1.4036897	285.73294	0	5.4479675						69	2	3	NaN	NaN	NaN	0.84945	1	5267	5267		0	0	1	9912.6			29410	1703	16977	17451	23474	23474					0.13307573382053306
VRVGALLL	8	Unmodified	_VRVGALLL_					0	0	0		ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.5665494660003	1	840.566549	839.559273	-0.6264	-0.00052653	3.2245	0.0027104	2.5981	0.0021839	840.5690469843319	52.881	0.095905	52.881	52.833	52.929	-0.00045776	519	52	1.310647	0.030507088	1.3091276	266.79333	0	6.209961						101	5	2	NaN	NaN	NaN	0.84945	1	5136	5136		0	0	1	12302			29411	1703	16977	17451	23475	23475					0.13307573382053306
VRVQLKDGSYH	11	Unmodified	_VRVQLKDGSYH_					0	0	0		ENST00000463750.5_1_12:1025794-1039020:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.3516682778502	2	651.351668	1300.68878	0.80738	0.00052589	7.0029	0.0045614	7.8103	0.0050873	651.3579574006832	41.665	0.14428	41.673	41.601	41.745	0.0082588	1239	34	0.87444305	0.020250916	0.8729236	353.95816	0	8.197174						99	7	3	NaN	NaN	NaN	0.76654	1	17964	17964		2.5994	1.4226	1	5651.7			29412	296	16978	17452	23476	23476					0.0504667820339364
VRVQLKDGSYH	11	Unmodified						0	0	0		ENST00000463750.5_1_12:1025794-1039020:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	651.351668	1300.68878	1.035	0.00067416	6.9881	0.0045517	8.0231	0.0052258	651.3555726925863	41.666	0.096149	41.666	41.618	41.714	0	1239	28	0.87444305	0.016572475	0.87444305	353.95816		6.708252	-0.0033098	-7.6556E-06	0.00075972	NaN	2.5994	56	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3577.3			29413	296	16978	17452							0.0504667820339364
VRYDVQGAW	9	Unmodified	_VRYDVQGAW_					0	0	0			REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2748980133	2	547.274898	1092.53524	1.1742	0.00064261	-5.4106	-0.0029611	-4.2364	-0.0023185	547.2740296374117	29.473	0.12064	29.466	29.417	29.538	-0.0070667	1260	49	0.8615505	0.029476583	0.8600311	349.43692	0	11.955414						133	6	3	NaN	NaN	NaN	0.61413	1	12187	12187		4.9097	0.94122	1	10748	+		29414	11471	16979	17453	23477	23477					-0.007323118423073538
VRYDVQGAW	9	Unmodified						0	0	0			REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	547.274898	1092.53524	1.1742	0.00064261	-5.4106	-0.0029611	-4.2364	-0.0023185	547.2740296374117	29.473	0.12064	29.466	29.417	29.538	-0.0070667	1260	49	0.8615505	0.029476583	0.8600311	349.43692		11.955414	-0.0039165	-0.00049412	0.001083	NaN	4.9097	133	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10748	+		29415	11471	16979	17453							-0.007323118423073538
VSAGGATAQ	9	Unmodified	_VSAGGATAQ_					0	0	0			REV__ENST00000471850.1_1_3:119298364-119306722:+|nuORF	REV__ENST00000471850.1_1_3:119298364-119306722:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	761.3788082751	1	761.378808	760.371532	1.5236	0.00116	-2.1763	-0.001657	-0.65268	-0.00049694	761.3785060383907	43.537	0.33582	43.537	43.441	43.777	0	498	97	1.3232021	0.057397485	1.3232021	269.8004	0	11.703339						888	15	4	NaN	NaN	NaN	0.66196	1	4219	4219		2.4615	0	1	129380	+		29416	12327	16980	17454	23478	23478					-0.018239096131878796
VSAGGATAQ	9	Unmodified						0	0	0			REV__ENST00000471850.1_1_3:119298364-119306722:+|nuORF	REV__ENST00000471850.1_1_3:119298364-119306722:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	761.378808	760.371532	1.5236	0.00116	-2.1763	-0.001657	-0.65268	-0.00049694	761.3785060383907	43.537	0.33582	43.537	43.441	43.777	0	498	97	1.3232021	0.057397485	1.3232021	269.8004		11.703339	0.0074784	-0.00010775	-0.00013669	NaN	2.4615	888	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129380	+		29417	12327	16980	17454							-0.018239096131878796
VSAGGGHP	8	Unmodified	_VSAGGGHP_					0	0	0		ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.331464152	1	681.331464	680.324188	1.8515	0.0012615	-7.285	-0.0049635	-5.4336	-0.0037021	681.3266867599513	26.456	0.072382	26.456	26.456	26.529	0	627	43	1.24593	0.025218964	1.24593	254.5737	0	5.1528473						81	4	3	NaN	NaN	NaN	0.84651	1	2849	2849		1.6704	0.2308	1	5969.2			29418	7262	16981	17455	23479	23479					-0.028761440935340943
VSAPGVLIV	9	Unmodified	_VSAPGVLIV_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.77092855110004	2	427.770929	853.527304	1.3662	0.00058443	-2.8542	-0.0012209	-1.488	-0.00063651	427.76990656768527	20.165	0.14414	20.165	20.117	20.261	0	1398	31	0.77658504	0.018516839	0.77658504	316.07172	0	7.536377						78	7	2	NaN	NaN	NaN	0.39244	1	5443	5443		14.042	0	1	7280.2	+		29419	9113	16982	17456	23480	23480					0.09468160908238588
VSAPGVLIV	9	Unmodified						0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	427.770929	853.527304	1.3662	0.00058443	-2.8542	-0.0012209	-1.488	-0.00063651	427.76990656768527	20.165	0.14414	20.165	20.117	20.261	0	1398	31	0.77658504	0.018516839	0.77658504	316.07172		7.536377	0.0072273	0.00012006	0.0016856	NaN	14.042	78	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7280.2	+		29420	9113	16982	17456							0.09468160908238588
VSAPGVLIV	9	Unmodified						0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	427.770929	853.527304	1.4161	0.00060576	-3.1568	-0.0013504	-1.7407	-0.00074462	427.7700631076297	20.164	0.096367	20.15	20.126	20.222	-0.014143	1401	31	0.77473325	0.018518806	0.7732138	315.31802		7.537201	-0.0072273	-0.00013883	-0.0016856	NaN	14.042	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6316.8	+		29421	9113	16982	17456							0.09468160908238588
VSASCGSK	8	Unmodified	_VSASCGSK_					0	0	0		ENST00000440172.5_1_7:138522453-138522654:-|nuORF	ENST00000440172.5_1_7:138522453-138522654:-|nuORF	ENST00000440172.5_1_7:138522453-138522654:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.3450653057001	1	738.345065	737.337789	2.8185	0.002081	5.9391	0.0043851	8.7576	0.0064661	738.3495423481176	18.194	0.04804	18.18	18.156	18.204	-0.01395	603	55	1.2603331	0.03240347	1.2588136	257.1236	0	6.6107025						55	3	2	NaN	NaN	NaN	0.82797	1	3798	3798		5.4659	0	1	3656.3			29422	7003	16983	17457	23481	23481					-0.041386543765838724
VSATGPLV	8	Unmodified	_VSATGPLV_					0	0	0			REV__ENST00000465160.2_1_9:140287076-140287355:-|nuORF	REV__ENST00000465160.2_1_9:140287076-140287355:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	372.21852883985	2	372.218529	742.422505	1.7974	0.00066903	2.6859	0.00099973	4.4833	0.0016688	372.2194297969031	18.89	0.096144	18.876	18.852	18.948	-0.014061	1389	61	0.7821392	0.037029624	0.78061974	319.0845	0	15.1067505						121	5	2	NaN	NaN	NaN	0.84876	1	3877	3877		0.39566	0	1	15038	+		29423	12289	16984	17458	23482	23482					0.040990394316736456
VSDTSVVL	8	Unmodified	_VSDTSVVL_					0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744;CON__Q8BGZ7	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.4458252078001	1	819.445825	818.438549	2.1573	0.0017678	-1.6543	-0.0013556	0.50301	0.00041219	819.4437318596833	22.236	0.07234	22.236	22.212	22.284	0	474	40	1.3375392	0.0232867	1.3375392	272.3806	0	4.7421875						67	4	2	NaN	NaN	NaN	0.40747	1	5001	5001		36.036	0	1	4619.8		+	29424	219	16985	17459	23483	23483					0.022067008779117714
VSDTSVVL	8	Unmodified						0	0	0		CON__Q5XQN5;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q922U2;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__P07744;CON__Q8BGZ7	CON__Q5XQN5	CON__Q5XQN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.445825	818.438549	1.9765	0.0016197	-1.7915	-0.0014681	0.185	0.0001516	819.4450930425608	22.235	0.048264	22.222	22.197	22.246	-0.013731	474	37	1.3375392	0.02149427	1.3360198	272.3806		4.3771667	-0.0070723	-5.8962E-05	-0.00075972	NaN	36.036	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3442		+	29425	219	16985	17459							0.022067008779117714
VSEAVSLIL	9	Unmodified	_VSEAVSLIL_					0	0	0		nc|ENSG00000128815|Q6ZS81-2|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5506246303001	1	930.550625	929.543348	1.4284	0.0013292	-0.29687	-0.00027625	1.1315	0.0010529	930.5504096925564	33.624	0.048176	33.624	33.576	33.624	0	279	37	1.4535767	0.021350622	1.4535767	295.42612	0	4.3392944						38	3	2	NaN	NaN	NaN	0.14301	1	6605	6605		29.598	4.6373	1	2226.2			29426	2584	16986	17460	23484	23484					0.07575822354476713
VSEAVSLIL	9	Unmodified						0	0	0		nc|ENSG00000128815|Q6ZS81-2|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.550625	929.543348	1.4209	0.0013223	-0.52401	-0.00048761	0.89694	0.00083465	930.5521032846839	33.599	0.04826	33.597	33.597	33.645	-0.0018501	273	37	1.4571344	0.021346092	1.4556149	296.1492		4.338379	-0.013601	-0.00010912	0.0010191	NaN	29.598	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2545.1			29427	2584	16986	17460							0.07575822354476713
VSEGALGLIL	10	Unmodified	_VSEGALGLIL_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.29222509920004	2	486.292225	970.569897	1.8879	0.00091808	-2.2541	-0.0010961	-0.36615	-0.00017806	486.2916347943509	21.994	0.072229	21.994	21.97	22.043	0	1323	46	0.8228144	0.027692616	0.8228144	334.24768	0	11.24942						100	4	3	NaN	NaN	NaN	0.2358	1	7635	7635		32.453	4.6639	1	9168.8	+		29428	11025	16987	17461	23485	23485					0.08343511245811897
VSEGITMTE	9	Unmodified	_VSEGITMTE_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4448389298002	1	966.444839	965.437562	2.0425	0.0019739	-1.7822	-0.0017224	0.26028	0.00025155	966.4431391150076	19.418	0.072113	19.404	19.38	19.452	-0.014141	351	37	1.4108255	0.021402955	1.409306	286.5817	0	4.347595						58	4	2	NaN	NaN	NaN	0.66196	1	7341	7341		2.4615	0	1	3671.6	+		29429	10477	16988	17462	23486	23486					-0.04653881553292649
VSEPVEIGI	9	Unmodified	_VSEPVEIGI_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B;BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.514239124	1	942.514239	941.506963	1.628	0.0015344	1.014	0.00095574	2.6421	0.0024902	942.512443774378	27.953	0.072382	27.953	27.929	28.001	0	297	49	1.4428991	0.028479576	1.4428991	293.2016	0	5.78714						150	4	3	NaN	NaN	NaN	0.056143	1	6850	6850		44.302	0	1	19346			29430	2527	16989	17463	23487	23487					0.033869454577597935
VSETFKDTVL	10	Unmodified	_VSETFKDTVL_					0	0	0			REV__ENST00000591398.1_1_19:19293380-19297824:-|nuORF	REV__ENST00000591398.1_1_19:19293380-19297824:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.80315392625	2	569.803154	1137.59175	2.1703	0.0012366	-10.889	-0.0062047	-8.7189	-0.004968	569.797791804252	23.224	0.21699	23.224	23.176	23.393	0	1224	79	0.883646	0.047827005	0.883646	358.22183	0	19.38861						376	10	4	NaN	NaN	NaN	0.28195	1	14370	14370		28.495	3.9333	1	45758	+		29431	12920	16990	17464	23488	23488					0.028462712037253368
VSETLIFIF	9	Unmodified	_VSETLIFIF_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1;SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4;ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.80242564475	2	534.802426	1067.5903	1.6762	0.00089645	-2.1969	-0.0011749	-0.52064	-0.00027844	535.3026731752549	43.225	0.095791	43.225	43.177	43.273	0	1260	22	0.8615505	0.012899458	0.8615505	349.53857	0	5.233429						60	5	3	NaN	NaN	NaN	0.078597	1	11459	11459		38.918	0	1	2944.5			29432	1049	16991	17465	23489	23489					0.05920681905604397
VSGAASFL	8	Unmodified	_VSGAASFL_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.3984810847002	1	751.398481	750.391205	1.0432	0.00078388	4.5626	0.0034284	5.6059	0.0042122	751.4014317525542	31.839	0.21722	31.839	31.766	31.983	0	570	70	1.2801172	0.041327238	1.2801172	261.07687	0	8.428589						257	10	2	NaN	NaN	NaN	0.69631	1	4058	4058		19.285	0	1	25905	+		29433	9471	16992	17466	23490	23490					0.00602466397583612
VSGAASFL	8	Unmodified						0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.398481	750.391205	1.0432	0.00078388	4.5626	0.0034284	5.6059	0.0042122	751.4014317525542	31.839	0.21722	31.839	31.766	31.983	0	570	70	1.2801172	0.041327238	1.2801172	261.07687		8.428589	0.0027309	-4.3379E-05	0.00075972	NaN	19.285	257	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25905	+		29434	9471	16992	17466							0.00602466397583612
VSGAASFL	8	Unmodified						0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	751.398481	750.391205	0.81737	0.00061417	4.6753	0.003513	5.4927	0.0041272	751.4015515831477	31.838	0.24136	31.833	31.737	31.978	-0.0044155	570	67	1.2801172	0.039532423	1.2785977	261.07687		8.062561	-0.0027309	4.1263E-05	-0.00075972	NaN	19.285	290	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26681	+		29435	9471	16992	17466							0.00602466397583612
VSGAGIVP	8	Unmodified	_VSGAGIVP_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.2054214646	2	350.205421	698.39629	2.4208	0.00084777	1.3694	0.00047957	3.7902	0.0013273	350.2058206400398	18.364	0.21594	18.364	18.292	18.508	0	1419	106	0.76361835	0.06491089	0.76361835	311.88354	0	26.511475						369	10	3	NaN	NaN	NaN	0.84876	1	3198	3198		0.39566	0	1	66641	+		29436	13261	16993	17467	23491	23491					0.035027702601951205
VSGAGIVP	8	Unmodified						0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	350.205421	698.39629	2.4208	0.00084777	1.3694	0.00047957	3.7902	0.0013273	350.2058206400398	18.364	0.21594	18.364	18.292	18.508	0	1419	106	0.76361835	0.06491089	0.76361835	311.88354		26.511475	-0.0036074	1.3021E-06	-0.00016677	NaN	0.39566	369	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66641	+		29437	13261	16993	17467							0.035027702601951205
VSGAGIVP	8	Unmodified						0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	350.205421	698.39629	2.387	0.00083594	1.3659	0.00047835	3.7529	0.0013143	350.2058513950347	18.386	0.21608	18.372	18.324	18.54	-0.01395	1416	82	0.76547134	0.050041497	0.7639519	312.64038		20.438385	0.0036074	-1.1361E-06	0.00016677	NaN	0.39566	345	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64344	+		29438	13261	16993	17467							0.035027702601951205
VSGCNELC	8	Unmodified	_VSGCNELC_					0	0	0			REV__ENSG00000118160|ENST00000236877|SLC8A2	REV__ENSG00000118160|ENST00000236877|SLC8A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.6674885743	2	412.667489	823.320424	1.2403	0.00051183	-0.28229	-0.00011649	0.95801	0.00039534	412.6678256635211	27.012	0.072399	27.012	26.988	27.06	0	1413	37	0.7673241	0.022232234	0.7673241	312.48364	0	9.0538025						60	4	2	NaN	NaN	NaN	0.83211	1	5062	5062		4.9097	0	1	4469.5	+		29439	9261	16994	17468	23492	23492					-0.09830317973899128
VSGCNELC	8	Unmodified						0	0	0			REV__ENSG00000118160|ENST00000236877|SLC8A2	REV__ENSG00000118160|ENST00000236877|SLC8A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	412.667489	823.320424	1.2403	0.00051183	-0.28229	-0.00011649	0.95801	0.00039534	412.6678256635211	27.012	0.072399	27.012	26.988	27.06	0	1413	37	0.7673241	0.022232234	0.7673241	312.48364		9.0538025	-0.0066315	4.9577E-05	0.0016861	NaN	4.9097	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4469.5	+		29440	9261	16994	17468							-0.09830317973899128
VSGEELDVPL	10	Unmodified	_VSGEELDVPL_					0	0	0		ENST00000590689.1_2_16:4779979-4784172:-|nuORF;ENST00000593120.5_1_16:4764228-4784172:-|nuORF;ENST00000592698.5_2_16:4776816-4784259:-|nuORF;ENSG00000168096|ENST00000304283|ANKS3	ENST00000590689.1_2_16:4779979-4784172:-|nuORF	ENST00000590689.1_2_16:4779979-4784172:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5411821559999	1	1057.54118	1056.53391	1.0232	0.0010821	-2.7848	-0.0029451	-1.7616	-0.001863	1057.5389400401582	32.175	0.16888	32.172	32.099	32.268	-0.0037613	165	52	1.5210435	0.030123353	1.5195241	308.59525	0	6.1115417						146	8	2	NaN	NaN	NaN	0.25724	1	10713	10713		30.61	6.2099	1	15960			29441	4597	16995	17469	23493	23493					0.007900092782847423
VSGFYLLKQF	10	Unmodified	_VSGFYLLKQF_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3344242649	2	601.334424	1200.6543	0.90156	0.00054214	8.2994	0.0049907	9.201	0.0055329	601.338990345705	22.042	0.28913	22.029	21.908	22.197	-0.013731	1113	34	0.9515937	0.02016145	0.95007426	385.52435	0	8.168121						131	13	2	NaN	NaN	NaN	0.76892	1	15856	15856		3.2116	1.0353	1	11111	+		29442	10842	16996	17470	23494	23494					0.061994620625455354
VSGGFGFG	8	Unmodified	_VSGGFGFG_					0	0	0			REV__ENSG00000170477|ENST00000551956|KRT4	REV__ENSG00000170477|ENST00000551956|KRT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3409662058002	1	727.340966	726.33369	0.6129	0.00044579	1.4832	0.0010788	2.0961	0.0015246	727.341657387312	35.048	0.072388	35.048	35.023	35.096	0	714	52	1.1936152	0.030719757	1.1936152	243.57968	0	6.2689514						85	4	2	NaN	NaN	NaN	0.84876	1	3707	3707		0.39566	0	1	10410	+	+	29443	8266	16997	17471	23495	23495					-0.04042375807989629
VSGGLLIF	8	Unmodified	_VSGGLLIF_					0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.4818167836002	1	805.481817	804.47454	2.0007	0.0016115	1.3501	0.0010875	3.3508	0.002699	805.4821928792227	56.373	0.07196	56.373	56.349	56.421	0	312	52	1.433996	0.030277252	1.433996	292.107	0	6.1675415						124	4	3	NaN	NaN	NaN	0.84692	1	4805	4805		1.4396	0	1	14728	+		29444	8409	16998	17472	23496	23496					0.0644820284543357
VSGGLLIF	8	Unmodified	_VSGGLLIF_					0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.4818167836002	1	805.481817	804.47454	-0.19394	-0.00015622	3.9517	0.003183	3.7578	0.0030268	805.4847147400009	56.371	0.095894	56.37	56.346	56.442	-0.00056458	309	67	1.435777	0.039188623	1.4342575	292.4698	0	7.9827576						139	5	3	NaN	NaN	NaN	0.84207	1	4714	4714		3.5732	0	1	17525	+		29445	8409	16998	17472	23497	23497					0.0644820284543357
VSGGLLIF	8	Unmodified						0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	805.481817	804.47454	2.0007	0.0016115	1.3501	0.0010875	3.3508	0.002699	805.4821928792227	56.373	0.07196	56.373	56.349	56.421	0	312	52	1.433996	0.030277252	1.433996	292.107		6.1675415	0.001275	-0.0013289	-0.00013079	NaN	3.5732	124	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14728	+		29446	8409	16998	17472							0.0644820284543357
VSGGLLIF	8	Unmodified						0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	805.481817	804.47454	-0.19394	-0.00015622	3.9517	0.003183	3.7578	0.0030268	805.4847147400009	56.371	0.095894	56.37	56.346	56.442	-0.00056458	309	67	1.435777	0.039188623	1.4342575	292.4698		7.9827576	-0.001275	0.00076662	0.00013079	NaN	3.5732	139	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17525	+		29447	8409	16998	17472							0.0644820284543357
VSGPSLLSAL	10	Unmodified	_VSGPSLLSAL_					0	0	0			REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.276575035	2	472.276575	942.538597	1.7055	0.00080547	-0.77249	-0.00036483	0.93302	0.00044064	472.27631912326245	20.213	0.31244	20.213	20.117	20.429	0	1341	76	0.8117308	0.046189368	0.8117308	329.88217	0	18.771088						545	14	4	NaN	NaN	NaN	0.013201	1	6889	6889		67.154	3.1595	1	347500	+		29448	9209	16999	17473	23498	23498					0.06502938211713172
VSGPSLLSAL	10	Unmodified	_VSGPSLLSAL_					0	0	0			REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.276575035	2	472.276575	942.538597	0.95242	0.0004498	-0.15309	-7.23E-05	0.79933	0.0003775	472.27656610380194	20.237	0.33709	20.222	20.102	20.439	-0.014143	1344	52	0.8098828	0.03141558	0.8083634	329.13116	0	12.76709						526	15	4	NaN	NaN	NaN	0.10964	1	6756	6756		44.638	0.86287	1	348380	+		29449	9209	16999	17473	23499	23499					0.06502938211713172
VSGPSLLSAL	10	Unmodified						0	0	0			REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	472.276575	942.538597	1.7055	0.00080547	-0.77249	-0.00036483	0.93302	0.00044064	472.27631912326245	20.213	0.31244	20.213	20.117	20.429	0	1341	76	0.8117308	0.046189368	0.8117308	329.88217		18.771088	-0.0048637	-0.00026499	0.0016837	NaN	67.154	545	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347500	+		29450	9209	16999	17473							0.06502938211713172
VSGPSLLSAL	10	Unmodified						0	0	0			REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	REV__ENST00000498749.1_1_2:73114531-73115553:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	472.276575	942.538597	0.95242	0.0004498	-0.15309	-7.23E-05	0.79933	0.0003775	472.27656610380194	20.237	0.33709	20.222	20.102	20.439	-0.014143	1344	52	0.8098828	0.03141558	0.8083634	329.13116		12.76709	0.0048637	0.00032007	-0.0016837	NaN	67.154	526	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348380	+		29451	9209	16999	17473							0.06502938211713172
VSGVGGGA	8	Unmodified	_VSGVGGGA_					0	0	0		ENST00000580878.1_1_19:40741997-40745051:-|nuORF	ENST00000580878.1_1_19:40741997-40745051:-|nuORF	ENST00000580878.1_1_19:40741997-40745051:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.3096660774	1	603.309666	602.30239	1.6496	0.00099521	-11.061	-0.0066735	-9.4118	-0.0056783	603.3032056557321	25.467	0.19303	25.455	25.334	25.527	-0.012011	1182	91	0.9093879	0.055113494	0.90786844	186.2839	0	11.289749						337	9	2	NaN	NaN	NaN	0.82332	1	628	628		6.0903	2.5171	1	125850			29452	7680	17000	17474	23500	23500					-0.014669488420963717
VSHICVVLI	9	Unmodified	_VSHICVVLI_					0	0	0		ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.79133802970006	2	491.791338	981.568123	0.90631	0.00044572	5.3097	0.0026112	6.216	0.003057	491.7943196515599	34.13	0.072418	34.129	34.105	34.177	-0.0012474	1317	34	0.8265074	0.020310104	0.82498795	335.69525	0	8.249176						63	4	2	NaN	NaN	NaN	0.47587	1	7778	7778		10.605	0.85897	1	5640.2			29453	5040	17001	17475	23501	23501					0.07660178956211894
VSHNGNTI	8	Unmodified	_VSHNGNTI_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	REV__nc|ENSG00000080546|Q9Y6P5-3|SESN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	841.4162564139002	1	841.416256	840.40898	1.4508	0.0012208	4.7117	0.0039645	6.1625	0.0051852	841.420410900621	22.621	0.24114	22.607	22.559	22.8	-0.01354	414	211	1.3733286	0.12543702	1.3718091	279.54813	0	25.533325						677	11	5	NaN	NaN	NaN	0.55996	1	5139	5139		27.789	0	1	262170	+		29454	8649	17002	17476	23502	23502					-0.017608183475545047
VSHRLKNYRQ	10	Unmodified	_VSHRLKNYRQ_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.2459436086	3	434.245944	1299.716	1.3147	0.00057092	8.6002	0.0037346	9.915	0.0043055	434.2496363653592	26.311	0.14472	26.3	26.228	26.373	-0.011135	1392	37	0.780288	0.022215366	0.77876854	473.76877	0	13.488556						130	7	3	NaN	NaN	NaN	0.72095	1	17948	17948		6.6174	0.69763	1	24395	+		29455	8544	17003	17477	23503	23503					0.0781320653441071
VSKKPGEV	8	Unmodified	_VSKKPGEV_					0	0	0		nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	843.4934441024001	1	843.493444	842.486168	-0.32165	-0.00027131	0.6592	0.00055603	0.33756	0.00028473	843.4935143871221	56.083	0.048054	56.082	56.058	56.106	-0.00056458	444	46	1.3554435	0.026843548	1.353924	275.89658	0	5.4638977						52	3	2	NaN	NaN	NaN	0.84562	1	5173	5173		2.1763	0.93449	1	4911.5			29456	5925	17004	17478	23504	23504					0.05862399868760804
VSKKPGEV	8	Unmodified						0	0	0		nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	843.493444	842.486168	1.7464	0.0014731	-2.313	-0.001951	-0.56658	-0.0004779	843.4917613527772	56.085	0.024036	56.085	56.061	56.085	0	450	49	1.3518641	0.028637648	1.3518641	275.16803		5.829132	0.0013502	-0.0010127	-0.0010299	NaN	2.1763	73	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5917.2			29457	5925	17004	17478							0.05862399868760804
VSLMELFF	8	Unmodified	_VSLMELFF_					0	0	0			REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	REV__ENST00000471717.1_1_7:99772169-99774834:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.5063169746	1	985.506317	984.499041	1.6202	0.0015967	-3.0813	-0.0030366	-1.4611	-0.0014399	985.5033535372983	34.781	0.096367	34.78	34.732	34.828	-0.0006485	222	55	1.4873441	0.03196132	1.4858247	302.04263	0	6.49057						122	5	2	NaN	NaN	NaN	0.80692	1	7856	7856		8.2903	0	1	11916	+		29458	11284	17005	17479	23505	23505					0.006170949366378409
VSLSFLVR	8	Unmodified	_VSLSFLVR_					0	0	0			REV__ENST00000515415.5_1_5:57754112-57754961:-|nuORF	REV__ENST00000515415.5_1_5:57754112-57754961:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.5563787102002	1	920.556379	919.549102	-0.47532	-0.00043756	3.2198	0.002964	2.7444	0.0025264	920.5595646522486	56.059	0.12005	56.058	56.034	56.154	-0.00056458	300	67	1.4411188	0.03916776	1.4395994	292.94064	0	7.9617615						212	6	4	NaN	NaN	NaN	0.84455	1	6287	6287		2.7852	0	1	54961	+		29459	12575	17006	17480	23506	23506					0.08610965656805547
VSMDQAPVEC	10	Unmodified	_VSMDQAPVEC_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1078.4543577586	1	1078.45436	1077.44708	1.8926	0.0020411	5.5925	0.0060312	7.485	0.0080723	1078.4603761454994	25.901	0.096508	25.901	25.877	25.974	0	135	49	1.5387528	0.028325915	1.5387528	312.11002	0	5.7454224						94	5	2	NaN	NaN	NaN	0.73444	1	11850	11850		5.6942	0.2283	1	7782.8			29460	2770	17007	17481	23507	23507					-0.0885443653942275
VSNFTKKA	8	Unmodified	_VSNFTKKA_					0	0	0			REV__ENSG00000151834|ENST00000381620|GABRA2	REV__ENSG00000151834|ENST00000381620|GABRA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	447.75580980315	2	447.75581	893.497067	1.7764	0.00079541	-2.9062	-0.0013013	-1.1297	-0.00050584	447.754619905496	23.272	0.048258	23.258	23.234	23.283	-0.013294	1350	49	0.80618626	0.029569209	0.8046668	327.88724	0	12.026184						60	3	2	NaN	NaN	NaN	0.84512	1	5866	5866		2.4615	0	1	5880.2	+		29461	10038	17008	17482	23508	23508					0.046058022430429446
VSNKKKQF	8	Unmodified	_VSNKKKQF_					0	0	0			REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1	REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5730914069002	1	978.573091	977.565815	0.14366	0.00014058	-7.6478	-0.0074839	-7.5041	-0.0073433	978.5655701144022	54.594	0.048237	54.593	54.569	54.617	-0.0006218	171	64	1.5174994	0.037215114	1.51598	308.19662	0	7.5582275						72	3	2	NaN	NaN	NaN	0.84562	1	7667	7667		2.1763	0.2517	1	7595.1	+		29462	9909	17009	17483	23509	23509					0.07613466542761671
VSNLVLGL	8	Unmodified	_VSNLVLGL_					0	0	0			REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	814.5032805072	1	814.503281	813.496004	1.7572	0.0014312	-3.3403	-0.0027207	-1.5832	-0.0012895	814.5007960128115	28.507	0.14477	28.499	28.451	28.596	-0.0083485	504	40	1.3196158	0.023311496	1.3180964	268.7576	0	4.747711						77	7	2	NaN	NaN	NaN	0.84897	1	4831	4831		0.27539	0	1	5013.8	+		29463	13401	17010	17484	23510	23510					0.08179587874133176
VSNVLLFI	8	Unmodified	_VSNVLLFI_					0	0	0		ENST00000541935.5_1_12:13349755-13364597:+|nuORF	ENST00000541935.5_1_12:13349755-13364597:+|nuORF	ENST00000541935.5_1_12:13349755-13364597:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.5502306998002	1	904.550231	903.542954	1.8321	0.0016572	-1.8353	-0.0016601	-0.0032267	-2.9187E-06	904.5486785479704	31.114	0.072365	31.109	31.109	31.181	-0.0050716	324	55	1.42687	0.032080412	1.4253505	290.12003	0	6.5227966						78	4	2	NaN	NaN	NaN	0.75347	1	6031	6031		15.463	0	1	6399.2			29464	7502	17011	17485	23511	23511					0.08732447425290957
VSPAPQSS	8	Unmodified	_VSPAPQSS_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.3835593020001	1	772.383559	771.376283	2.318	0.0017904	1.631	0.0012597	3.9489	0.0030501	772.3856442959732	28.339	0.072376	28.339	28.339	28.412	0	555	34	1.2891023	0.019765139	1.2891023	262.781	0	4.0290833						29	4	2	NaN	NaN	NaN	0.83582	1	4372	4372		4.4131	0	1	1549.8			29465	604	17012	17486	23512	23512					-0.018550254704223335
VSPIPIKP	8	Unmodified	_VSPIPIKP_					0	0	0			REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.77347124005	2	425.773471	849.53239	1.7771	0.00075662	2.1089	0.00089791	3.886	0.0016545	425.7736851671173	17.789	0.1439	17.789	17.765	17.909	0	1359	43	0.8006399	0.025892675	0.8006399	325.88632	0	10.539154						126	7	3	NaN	NaN	NaN	0.84727	1	5379	5379		1.2418	0	1	14274	+		29466	8578	17013	17487	23513	23513					0.10160464770854105
VSPIPIKP	8	Unmodified						0	0	0			REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	425.773471	849.53239	1.7771	0.00075662	2.1089	0.00089791	3.886	0.0016545	425.7736851671173	17.789	0.1439	17.789	17.765	17.909	0	1359	43	0.8006399	0.025892675	0.8006399	325.88632		10.539154	-0.027505	0.00011618	0.0016843	NaN	1.2418	126	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14274	+		29467	8578	17013	17487							0.10160464770854105
VSPIPIKP	8	Unmodified						0	0	0			REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	425.773471	849.53239	1.5419	0.0006565	1.9025	0.00081003	3.4444	0.0014665	425.7742918483128	17.858	0.12	17.844	17.796	17.916	-0.013786	1362	34	0.79879075	0.02034092	0.7972713	325.13364		8.279419	0.027505	-5.9583E-05	-0.0016843	NaN	1.2418	131	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16402	+		29468	8578	17013	17487							0.10160464770854105
VSPLGLAA	8	Unmodified	_VSPLGLAA_					0	0	0		nc|ENSG00000162004|A2IDD5-5|CCDC78;ENST00000482878.5_1_16:774909-776367:-|nuORF	nc|ENSG00000162004|A2IDD5-5|CCDC78	nc|ENSG00000162004|A2IDD5-5|CCDC78	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.4348665910001	1	727.434867	726.42759	1.4755	0.0010733	7.9127	0.005756	9.3882	0.0068293	727.4390648598758	55.725	0.096409	55.725	55.677	55.773	0	456	64	1.348284	0.037608862	1.348284	275.1421	0	7.674774						126	5	3	NaN	NaN	NaN	0.8439	1	3720	3720		3.1533	0	1	7959.9			29469	7215	17014	17488	23514	23514					0.053433432942824766
VSPLGLAA	8	Unmodified	_VSPLGLAA_					0	0	0		nc|ENSG00000162004|A2IDD5-5|CCDC78;ENST00000482878.5_1_16:774909-776367:-|nuORF	nc|ENSG00000162004|A2IDD5-5|CCDC78	nc|ENSG00000162004|A2IDD5-5|CCDC78	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.4348665910001	1	727.434867	726.42759	0.38365	0.00027908	7.6079	0.0055343	7.9916	0.0058134	727.440455910592	55.218	0.33622	55.217	55.169	55.506	-0.00061798	525	1009	1.3070582	0.6033656	1.3055388	266.7292	0	123.12781						2665	15	4	NaN	NaN	NaN	0.84692	1	3633	3633		1.4396	0	1	927630			29470	7215	17014	17488	23515	23515					0.053433432942824766
VSPLGLAA	8	Unmodified						0	0	0		nc|ENSG00000162004|A2IDD5-5|CCDC78;ENST00000482878.5_1_16:774909-776367:-|nuORF	nc|ENSG00000162004|A2IDD5-5|CCDC78	nc|ENSG00000162004|A2IDD5-5|CCDC78	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	727.434867	726.42759	1.4703	0.0010695	6.1617	0.0044822	7.6319	0.0055517	727.439465141304	54.908	0.095959	54.908	54.884	54.98	0	537	91	1.2998781	0.05387914	1.2998781	265.26398		10.995026	-0.15484	-0.00099495	-0.0028303	NaN	1.4396	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18908			29471	7215	17014	17488							0.053433432942824766
VSPLGLAA	8	Unmodified						0	0	0		nc|ENSG00000162004|A2IDD5-5|CCDC78;ENST00000482878.5_1_16:774909-776367:-|nuORF	nc|ENSG00000162004|A2IDD5-5|CCDC78	nc|ENSG00000162004|A2IDD5-5|CCDC78	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	727.434867	726.42759	-0.31987	-0.00023268	10.305	0.0074961	9.9849	0.0072634	727.4418452244261	55.722	0.096333	55.722	55.674	55.77	-0.00059128	456	49	1.348284	0.028646827	1.3467646	275.14206		5.8459167	-0.0014351	0.00063468	-0.00075972	NaN	3.1533	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9563.3			29472	7215	17014	17488							0.053433432942824766
VSPRSGNS	8	Unmodified	_VSPRSGNS_					0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.4006063497002	1	803.400606	802.39333	1.4232	0.0011434	-10.107	-0.0081202	-8.6841	-0.0069768	803.3921985907225	32.9	0.12069	32.9	32.876	32.997	0	522	67	1.3088527	0.03948176	1.3088527	266.6268	0	8.042847						130	6	2	NaN	NaN	NaN	0.72013	1	4774	4774		17.799	3.7574	1	12705			29473	6794	17015	17489	23516	23516					-0.01577104864611556
VSPRSGNS	8	Unmodified						0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	803.400606	802.39333	1.3078	0.0010507	-10.176	-0.0081751	-8.8679	-0.0071245	803.3923390256168	32.899	0.14478	32.897	32.873	33.018	-0.0024757	519	52	1.310647	0.030500531	1.3091276	266.99234		6.213257	-0.0017744	-2.8321E-05	0.00013745	NaN	17.799	138	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14256			29474	6794	17015	17489							-0.01577104864611556
VSQGGELY	8	Unmodified	_VSQGGELY_					0	0	0		ENSG00000136682|ENST00000259199|ZNG1B;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000470192.1_9:69256791-69261296:-|nuORF;ENST00000483817.3_1_9:172072-173358:-|nuORF	ENSG00000136682|ENST00000259199|ZNG1B	ENSG00000136682|ENST00000259199|ZNG1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	852.4097740525001	1	852.409774	851.402498	1.0333	0.00088078	4.6843	0.0039929	5.7176	0.0048737	852.413475121283	31.573	0.14487	31.573	31.525	31.67	0	378	46	1.3947657	0.026783466	1.3947657	283.85275	0	5.4508057						158	7	3	NaN	NaN	NaN	0.80692	1	5403	5403		8.2903	0	1	13580			29475	3032	17016	17490	23517	23517					-0.02914756298946486
VSQGSAAF	8	Unmodified	_VSQGSAAF_					0	0	0			REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	766.3729946157	1	766.372995	765.365718	1.3913	0.0010663	-2.3373	-0.0017913	-0.94599	-0.00072498	766.3712051338599	20.742	0.072346	20.742	20.718	20.79	0	567	115	1.2819146	0.068312526	1.2819146	261.35168	0	13.927292						166	4	2	NaN	NaN	NaN	0.7718	1	4286	4286		13.003	1.4544	1	17183	+		29476	12706	17017	17491	23518	23518					-0.02635008124855176
VSQGSAAF	8	Unmodified						0	0	0			REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	766.372995	765.365718	1.3913	0.0010663	-2.3373	-0.0017913	-0.94599	-0.00072498	766.3712051338599	20.742	0.072346	20.742	20.718	20.79	0	567	115	1.2819146	0.068312526	1.2819146	261.35168		13.927292	-0.0051627	-0.00085604	0.0034561	NaN	13.003	166	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17183	+		29477	12706	17017	17491							-0.02635008124855176
VSQGSAAF	8	Unmodified						0	0	0			REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	REV__ENST00000543304.5_1_11:72492093-72492171:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	766.372995	765.365718	1.2746	0.00097684	0.11069	8.4833E-05	1.3853	0.0010617	766.3735471687494	20.766	0.072304	20.752	20.704	20.776	-0.014086	576	112	1.2765218	0.06651831	1.2750024	260.2522		13.561523	0.0051627	0.0010201	-0.0034561	NaN	13.003	143	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12886	+		29478	12706	17017	17491							-0.02635008124855176
VSRSGSGG	8	Unmodified	_VSRSGSGG_					0	0	0		ENST00000278071.6_1_10:106072491-106072860:-|nuORF	ENST00000278071.6_1_10:106072491-106072860:-|nuORF	ENST00000278071.6_1_10:106072491-106072860:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3478424977001	1	706.347842	705.340566	0.88288	0.00062362	-4.4414	-0.0031371	-3.5585	-0.0025135	706.3443617069214	27.904	0.16891	27.895	27.87	28.039	-0.009552	582	70	1.2729256	0.041380167	1.2714062	259.90762	0	8.449051						131	8	2	NaN	NaN	NaN	0.84727	1	3248	3248		1.2418	0	1	9324			29479	6353	17018	17492	23519	23519					-0.02389062927420582
VSSASGGG	8	Unmodified	_VSSASGGG_					0	0	0			REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.2838452574001	1	621.283845	620.276569	1.3801	0.00085742	5.8015	0.0036044	7.1815	0.0044618	621.2872799304351	21.464	0.21696	21.464	21.416	21.633	0	1242	49	0.87260187	0.029460669	0.87260187	178.63362	0	6.0309906						214	10	3	NaN	NaN	NaN	0.84945	1	1154	1154		0	0	1	38200	+		29480	12414	17019	17493	23520	23520					-0.0487584308436908
VSSASGGG	8	Unmodified	_VSSASGGG_					0	0	0			REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.2838452574001	1	621.283845	620.276569	1.0071	0.0006257	6.6565	0.0041356	7.6636	0.0047613	621.287980246572	21.464	0.19276	21.45	21.426	21.619	-0.014006	1242	46	0.87260187	0.027617872	0.8710824	178.63362	0	5.6537476						173	9	3	NaN	NaN	NaN	0.84945	1	1084	1084		0	0	1	36869	+		29481	12414	17019	17493	23521	23521					-0.0487584308436908
VSSASGGG	8	Unmodified						0	0	0			REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	621.283845	620.276569	1.3801	0.00085742	5.8015	0.0036044	7.1815	0.0044618	621.2872799304351	21.464	0.21696	21.464	21.416	21.633	0	1242	49	0.87260187	0.029460669	0.87260187	178.63362		6.0309906	0.0069912	-0.00034793	0.00075972	NaN	0	214	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38200	+		29482	12414	17019	17493							-0.0487584308436908
VSSASGGG	8	Unmodified						0	0	0			REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	REV__ENST00000485288.6_1_X:48367409-48368014:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	621.283845	620.276569	1.0071	0.0006257	6.6565	0.0041356	7.6636	0.0047613	621.287980246572	21.464	0.19276	21.45	21.426	21.619	-0.014006	1242	46	0.87260187	0.027617872	0.8710824	178.63362		5.6537476	-0.0069912	0.00018328	-0.00075972	NaN	0	173	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36869	+		29483	12414	17019	17493							-0.0487584308436908
VSSATNEA	8	Unmodified	_VSSATNEA_					0	0	0		ENSG00000158955|ENST00000290015|WNT9B	ENSG00000158955|ENST00000290015|WNT9B	ENSG00000158955|ENST00000290015|WNT9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.6825074743	2	389.682507	777.350462	1.1088	0.00043209	6.312	0.0024597	7.4208	0.0028917	389.6853057472307	27.133	0.19303	27.133	27.084	27.277	0	1437	37	0.7524962	0.022251546	0.7524962	306.74164	0	9.070435						152	9	3	NaN	NaN	NaN	0.83211	1	4453	4453		4.9097	0	1	17646			29484	4005	17020	17494	23522	23522					-0.04711919712701729
VSSAVVAVVL	10	Unmodified	_VSSAVVAVVL_					0	0	0			REV__ENSG00000169905|ENST00000609928|TOR1AIP2	REV__ENSG00000169905|ENST00000609928|TOR1AIP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.29476778815007	2	472.294768	942.574983	-0.055441	-2.6184E-05	-0.33559	-0.0001585	-0.39103	-0.00018468	472.2944256533863	20.959	0.072197	20.945	20.897	20.969	-0.014088	1341	67	0.8117308	0.04066646	0.81021136	329.882	0	16.52658						155	4	3	NaN	NaN	NaN	0.56921	1	6759	6759		16.584	2.1591	1	19900	+		29485	10566	17021	17495	23523	23523					0.10139815108436778
VSSGGGGP	8	Unmodified	_VSSGGGGP_					0	0	0			REV__nc|ENSG00000132780|P49321-2|NASP	REV__nc|ENSG00000132780|P49321-2|NASP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	309.14810355095	2	309.148104	616.281654	1.4666	0.0004534	5.6648	0.0017513	7.1314	0.0022047	309.1501581444863	39.765	0.096466	39.77	39.673	39.77	0.0053368	1482	130	0.72465914	0.079946995	0.7231397	296.72635	0	32.73593						239	5	2	NaN	NaN	NaN	0.84692	1	988	988		1.4396	0	1	23388	+		29486	9546	17022	17496	23524	23524					-0.04183539221753563
VSSHSPDLLA	10	Unmodified	_VSSHSPDLLA_					0	0	0			REV__ENSG00000146221|ENST00000371505|TCTE1	REV__ENSG00000146221|ENST00000371505|TCTE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	513.2667386302	2	513.266739	1024.51892	1.259	0.00064623	4.4789	0.0022989	5.738	0.0029451	513.2685217159928	31.718	0.12067	31.718	31.67	31.79	0	1269	43	0.8560222	0.02580595	0.8560222	347.48157	0	10.475281						99	6	3	NaN	NaN	NaN	0.75966	1	9556	9556		3.9685	0	1	9105.5	+		29487	9940	17023	17497	23525	23525					0.007645622009476938
VSSHSPDLLA	10	Unmodified						0	0	0			REV__ENSG00000146221|ENST00000371505|TCTE1	REV__ENSG00000146221|ENST00000371505|TCTE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	513.266739	1024.51892	1.259	0.00064623	4.4789	0.0022989	5.738	0.0029451	513.2685217159928	31.718	0.12067	31.718	31.67	31.79	0	1269	43	0.8560222	0.02580595	0.8560222	347.48157		10.475281	0.014823	0.00010613	0.00075972	NaN	3.9685	99	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9105.5	+		29488	9940	17023	17497							0.007645622009476938
VSSHSPDLLA	10	Unmodified						0	0	0			REV__ENSG00000146221|ENST00000371505|TCTE1	REV__ENSG00000146221|ENST00000371505|TCTE1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	513.266739	1024.51892	0.45295	0.00023248	4.2847	0.0021992	4.7376	0.0024317	513.2691063209555	31.693	0.19312	31.688	31.592	31.785	-0.0044174	1269	52	0.8560222	0.03132391	0.85450274	347.48157		12.715179	-0.014823	-9.3239E-05	-0.00075972	NaN	3.9685	120	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10752	+		29489	9940	17023	17497							0.007645622009476938
VSSPDSLIL	9	Unmodified	_VSSPDSLIL_					0	0	0		ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	930.5142391240003	1	930.514239	929.506963	1.8498	0.0017213	0.85954	0.00079981	2.7094	0.0025211	930.5156421276964	24.96	0.072418	24.96	24.912	24.985	0	300	58	1.4411188	0.033832073	1.4411188	292.89435	0	6.876068						96	4	2	NaN	NaN	NaN	0.62619	1	6599	6599		4.4131	0	1	9520.1			29490	6374	17024	17498	23526	23526					0.03938945457787213
VSSPDSLIL	9	Unmodified						0	0	0		ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	930.514239	929.506963	1.4284	0.0013292	-0.59511	-0.00055376	0.83331	0.00077541	930.5134159096183	24.936	0.072386	24.924	24.9	24.972	-0.012392	300	58	1.4411188	0.03382492	1.4395994	292.89435		6.8746033	-0.018367	-0.00088012	-0.00075972	NaN	4.4131	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8204			29491	6374	17024	17498							0.03938945457787213
VSSSVGGG	8	Unmodified	_VSSSVGGG_					0	0	0		tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	tr|U7SPX1|U7SPX1_FUSNUNucleoid-associatedproteinHMPREF1766_01675OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01675PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	325.16121092620006	2	325.161211	648.307869	2.0078	0.00065284	1.0449	0.00033975	3.0526	0.00099259	325.1623671896035	34.541	0.048275	34.541	34.517	34.565	0	1545	28	0.68561107	0.016753078	0.68561107	280.43756	0	6.8525696						40	3	2	NaN	NaN	NaN	0.84945	1	2008	2008		0	0	1	2808			29492	13805	17025	17499	23527	23527					-0.030352700502703556
VSSTGNSI	8	Unmodified	_VSSTGNSI_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.3784739241001	1	764.378474	763.371197	1.7661	0.00135	4.7797	0.0036535	6.5458	0.0050034	764.3819953916022	23.778	0.096317	23.778	23.754	23.851	0	582	61	1.2729256	0.035957813	1.2729256	259.53094	0	7.3312683						81	5	2	NaN	NaN	NaN	0.84887	1	4258	4258		0.32989	0	1	5464.7	+		29493	8589	17026	17500	23528	23528					-0.01995329333033169
VSSVFLKE	8	Unmodified	_VSSVFLKE_					0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	908.5087598156	1	908.50876	907.501483	1.666	0.0015136	-2.8814	-0.0026178	-1.2154	-0.0011042	908.5068199992975	28.17	0.096577	28.161	28.112	28.209	-0.0089779	333	82	1.4215236	0.048118114	1.4200041	289.01404	0	9.783051						128	5	2	NaN	NaN	NaN	0.84512	1	6077	6077		2.4615	0	1	10073	+		29494	9496	17027	17501	23529	23529					0.04403266665940464
VSSVFLKE	8	Unmodified						0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	908.50876	907.501483	2.0691	0.0018798	-2.6251	-0.002385	-0.55605	-0.00050517	908.5069315689923	28.17	0.072382	28.17	28.122	28.194	0	327	82	1.425088	0.048118114	1.425088	289.73874		9.783051	0.0048665	0.00014958	0.002542	NaN	2.4615	140	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10428	+		29495	9496	17027	17501							0.04403266665940464
VSSVFLKE	8	Unmodified						0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	908.50876	907.501483	1.666	0.0015136	-2.8814	-0.0026178	-1.2154	-0.0011042	908.5068199992975	28.17	0.096577	28.161	28.112	28.209	-0.0089779	333	82	1.4215236	0.048118114	1.4200041	289.01404		9.783051	-0.0048665	-8.3276E-05	-0.002542	NaN	2.4615	128	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10073	+		29496	9496	17027	17501							0.04403266665940464
VSSVSSVS	8	Unmodified	_VSSVSSVS_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2;ENSG00000102076|ENST00000369951|OPN1LW	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	751.3832249510001	1	751.383225	750.375948	2.0311	0.0015262	6.1357	0.0046103	8.1668	0.0061364	751.3881072359034	23.826	0.072309	23.813	23.789	23.861	-0.013048	573	49	1.2783196	0.028760076	1.2768002	260.71036	0	5.8655396						82	4	2	NaN	NaN	NaN	0.84455	1	3983	3983		2.7852	0	1	7152			29497	3994	17028	17502	23530	23530					-0.009224451902696273
VSTLIFFPL	9	Unmodified	_VSTLIFFPL_					0	0	0			REV__ACKR1|p.A61S|1|0.28|ENSG00000213088|chr1:159205620-159205620|G/T|missense_variant	REV__ACKR1|p.A61S|1|0.28|ENSG00000213088|chr1:159205620-159205620|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.6077455787	1	1036.60775	1035.60047	1.0395	0.0010776	-3.4972	-0.0036252	-2.4577	-0.0025476	1036.6038102174537	31.331	0.12065	31.326	31.277	31.398	-0.0050716	159	43	1.5245869	0.024800897	1.5230675	309.3947	0	5.03302						101	6	2	NaN	NaN	NaN	0.60063	1	9822	9822		5.4659	0	1	7461.3	+		29498	8120	17029	17503	23531	23531					0.08409289630844796
VSTLIFFPL	9	Unmodified						0	0	0			REV__ACKR1|p.A61S|1|0.28|ENSG00000213088|chr1:159205620-159205620|G/T|missense_variant	REV__ACKR1|p.A61S|1|0.28|ENSG00000213088|chr1:159205620-159205620|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1036.60775	1035.60047	1.0395	0.0010776	-3.4972	-0.0036252	-2.4577	-0.0025476	1036.6038102174537	31.331	0.12065	31.326	31.277	31.398	-0.0050716	159	43	1.5245869	0.024800897	1.5230675	309.3947		5.03302	-0.015098	0.00063509	0.00012607	NaN	5.4659	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7461.3	+		29499	8120	17029	17503							0.08409289630844796
VSTSSGKG	8	Unmodified	_VSTSSGKG_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3679092378002	1	722.367909	721.360633	1.9264	0.0013916	4.779	0.0034522	6.7054	0.0048438	722.3711138798258	26.07	0.19307	26.059	26.011	26.204	-0.011137	627	82	1.24593	0.048654675	1.2444105	254.28792	0	9.9301605						214	9	2	NaN	NaN	NaN	0.84727	1	3542	3542		1.2418	0	1	36542	+		29500	11210	17030	17504	23532	23532					-0.01119311987463334
VSVASGGG	8	Unmodified	_VSVASGGG_					0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1637536151501	2	317.163754	632.312954	0.9678	0.00030695	3.0966	0.00098213	4.0644	0.0012891	317.1644276600112	35.023	0.14473	35.023	34.975	35.12	0	1521	52	0.70049703	0.03162068	0.70049703	286.67554	0	12.940613						152	7	2	NaN	NaN	NaN	0.84945	1	1528	1528		0	0	1	21568	+		29501	10559	17031	17505	23533	23533					-0.01790966187650156
VSVASGGG	8	Unmodified	_VSVASGGG_					0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	317.1637536151501	2	317.163754	632.312954	0.88121	0.00027949	4.733	0.0015011	5.6142	0.0017806	317.16542588461357	35.217	0.26541	35.217	35.168	35.434	0	1518	67	0.7023569	0.040914237	0.7023569	287.43668	0	16.743958						332	12	4	NaN	NaN	NaN	0.84945	1	1529	1529		0	0	1	56977	+		29502	10559	17031	17505	23534	23534					-0.01790966187650156
VSVASGGG	8	Unmodified	_VSVASGGG_					0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.1637536151501	2	317.163754	632.312954	1.3909	0.00044114	3.9168	0.0012423	5.3077	0.0016834	317.16458658408123	35.022	0.14479	35.022	34.974	35.119	-4.5776E-05	1524	58	0.698637	0.035340786	0.69711757	285.91434	0	14.463043						163	7	2	NaN	NaN	NaN	0.84887	1	1451	1451		0.32989	0	1	25810	+		29503	10559	17031	17505	23535	23535					-0.01790966187650156
VSVASGGG	8	Unmodified	_VSVASGGG_					0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	317.1637536151501	2	317.163754	632.312954	2.2645	0.00071823	3.8544	0.0012225	6.1189	0.0019407	317.16490294581547	38.153	0.048084	38.156	38.132	38.18	0.0034256	1515	43	0.7042165	0.026036322	0.70269704	288.19772	0	10.655243						59	3	2	NaN	NaN	NaN	0.84945	1	1452	1452		0	0	1	4480.2	+		29504	10559	17031	17505	23536	23536					-0.01790966187650156
VSVASGGG	8	Unmodified						0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	317.163754	632.312954	0.9678	0.00030695	3.0966	0.00098213	4.0644	0.0012891	317.1644276600112	35.023	0.14473	35.023	34.975	35.12	0	1521	52	0.70049703	0.03162068	0.70049703	286.67554		12.940613	0.00073672	-0.00024356	0.0016897	NaN	0.32989	152	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21568	+		29505	10559	17031	17505							-0.01790966187650156
VSVASGGG	8	Unmodified						0	0	0			REV__ENSG00000169696|ENST00000306739|ASPSCR1	REV__ENSG00000169696|ENST00000306739|ASPSCR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	317.163754	632.312954	1.3909	0.00044114	3.9168	0.0012423	5.3077	0.0016834	317.16458658408123	35.022	0.14479	35.022	34.974	35.119	-4.5776E-05	1524	58	0.698637	0.035340786	0.69711757	285.91434		14.463043	-0.00073672	0.00027674	-0.0016897	NaN	0.32989	163	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25810	+		29506	10559	17031	17505							-0.01790966187650156
VSVIVEML	8	Unmodified	_VSVIVEML_					0	0	0			REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	REV__tr|U7T2P6|U7T2P6_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00780PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	889.5063169746	1	889.506317	888.499041	1.7741	0.0015781	-2.0531	-0.0018262	-0.27892	-0.0002481	889.5059408931237	31.355	0.024126	31.35	31.35	31.374	-0.0050716	315	52	1.4322147	0.030274034	1.4306953	291.2807	0	6.157074						55	2	2	NaN	NaN	NaN	0.80692	1	5802	5802		8.2903	0	1	2983.4	+		29507	13582	17032	17506	23537	23537					0.05033094936629823
VSVIYVLM	8	Unmodified	_VSVIYVLM_					0	0	0		ENST00000480873.1_1_2:165600108-165630227:-|nuORF;ENST00000483743.5_1_2:165600108-165698476:-|nuORF;ENST00000496396.1_1_2:165600108-165698346:-|nuORF	ENST00000480873.1_1_2:165600108-165630227:-|nuORF	ENST00000480873.1_1_2:165600108-165630227:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.5270524167001	1	923.527052	922.519776	1.4697	0.0013573	0.53308	0.00049232	2.0028	0.0018497	923.5268120756443	32.707	0.072372	32.707	32.659	32.732	0	261	49	1.4642475	0.028452396	1.4642475	297.62793	0	5.7832947						77	4	2	NaN	NaN	NaN	0.50567	1	6452	6452		30.791	6.9407	1	5745.8			29508	7201	17033	17507	23538	23538					0.055416853163023916
VSVLVEPAL	9	Unmodified	_VSVLVEPAL_					0	0	0			REV__nc|ENSG00000183765|O96017-13|CHEK2	REV__nc|ENSG00000183765|O96017-13|CHEK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	926.5557100082	1	926.55571	925.548434	1.691	0.0015668	-0.65414	-0.00060609	1.0368	0.00096068	926.5544740947734	27.012	0.12069	27.012	26.988	27.109	0	312	97	1.433996	0.05702579	1.433996	291.46487	0	11.590698						254	6	4	NaN	NaN	NaN	0.018156	1	6511	6511		74.332	15.733	1	52551	+		29509	8199	17034	17508	23539	23539					0.08268126217080862
VSVLVEPAL	9	Unmodified	_VSVLVEPAL_					0	0	0			REV__nc|ENSG00000183765|O96017-13|CHEK2	REV__nc|ENSG00000183765|O96017-13|CHEK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	926.5557100082	1	926.55571	925.548434	0.75943	0.00070366	-0.29654	-0.00027476	0.46289	0.0004289	926.5549984674383	27.035	0.12069	27.025	26.977	27.098	-0.010124	312	88	1.433996	0.051665902	1.4324765	291.46487	0	10.501282						251	6	3	NaN	NaN	NaN	0.025843	1	6384	6384		64.55	14.717	1	52141	+		29510	8199	17034	17508	23540	23540					0.08268126217080862
VSVLVEPAL	9	Unmodified						0	0	0			REV__nc|ENSG00000183765|O96017-13|CHEK2	REV__nc|ENSG00000183765|O96017-13|CHEK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	926.55571	925.548434	1.691	0.0015668	-0.65414	-0.00060609	1.0368	0.00096068	926.5544740947734	27.012	0.12069	27.012	26.988	27.109	0	312	97	1.433996	0.05702579	1.433996	291.46487		11.590698	-0.0066315	-0.00018199	0.00075972	NaN	74.332	254	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52551	+		29511	8199	17034	17508							0.08268126217080862
VSVLVEPAL	9	Unmodified						0	0	0			REV__nc|ENSG00000183765|O96017-13|CHEK2	REV__nc|ENSG00000183765|O96017-13|CHEK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	926.55571	925.548434	0.75943	0.00070366	-0.29654	-0.00027476	0.46289	0.0004289	926.5549984674383	27.035	0.12069	27.025	26.977	27.098	-0.010124	312	88	1.433996	0.051665902	1.4324765	291.46487		10.501282	0.0066315	0.00014935	-0.00075972	NaN	74.332	251	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52141	+		29512	8199	17034	17508							0.08268126217080862
VSVSALAI	8	Unmodified	_VSVSALAI_					0	0	0			REV__nc|ENSG00000204217|Q13873-2|BMPR2	REV__nc|ENSG00000204217|Q13873-2|BMPR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	759.4610813414998	1	759.461081	758.453805	1.7593	0.0013361	-10.013	-0.0076042	-8.2533	-0.006268	759.4531207034162	55.701	0.048183	55.701	55.677	55.725	0	450	64	1.3518641	0.037576914	1.3518641	275.65698	0	7.662262						63	3	2	NaN	NaN	NaN	0.84945	1	4199	4199		0	0	1	4840.7	+		29513	11228	17035	17509	23541	23541					0.06491612465731578
VSVVPAGSG	9	Unmodified	_VSVVPAGSG_					0	0	0		ENST00000291672.5_1_21:47602711-47602843:-|nuORF	ENST00000291672.5_1_21:47602711-47602843:-|nuORF	ENST00000291672.5_1_21:47602711-47602843:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	772.4199448083001	1	772.419945	771.412668	1.4086	0.001088	7.8249	0.0060441	9.2335	0.0071321	772.4264019309966	28.025	0.072409	28.016	27.992	28.064	-0.0089779	504	49	1.3196158	0.028692722	1.3180964	269.0009	0	5.848938						87	4	2	NaN	NaN	NaN	0.56671	1	4299	4299		6.8632	0	1	9347.7			29514	6388	17036	17510	23542	23542					0.017818514262899043
VSWDPPQF	8	Unmodified	_VSWDPPQF_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.4570585961001	1	975.457059	974.449782	1.6951	0.0016535	-3.4632	-0.0033782	-1.7681	-0.0017247	975.4550049636755	30.608	0.072412	30.608	30.56	30.632	0	270	37	1.458913	0.021339297	1.458913	296.31116	0	4.334076						56	4	2	NaN	NaN	NaN	0.83211	1	7726	7726		4.9097	0	1	2861.3			29515	554	17037	17511	23543	23543					-0.03846477027957462
VSWLQSVEM	9	Unmodified	_VSWLQSVEM_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.7655172097001	2	539.765517	1077.51648	1.202	0.00064881	-0.90691	-0.00048952	0.29511	0.00015929	539.7642790933385	27.277	0.048258	27.267	27.267	27.315	-0.010126	1239	73	0.87444305	0.044176638	0.8729236	354.72754	0	17.920746						93	3	3	NaN	NaN	NaN	0.59509	1	11545	11545		5.6942	0	1	7435	+		29516	10301	17038	17512	23544	23544					-0.019176095283455652
VSWLQSVEM	9	Unmodified						0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.765517	1077.51648	1.419	0.00076593	-3.9463	-0.0021301	-2.5273	-0.0013642	540.2643849047685	27.253	0.16891	27.253	27.181	27.35	0	1227	85	0.88180584	0.05155611	0.88180584	357.71436		20.914307	-0.0066285	-0.0014429	0.0044411	NaN	5.6942	190	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13651	+		29517	10301	17038	17512							-0.019176095283455652
VSWLQSVEM	9	Unmodified						0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.765517	1077.51648	1.202	0.00064881	-0.90691	-0.00048952	0.29511	0.00015929	539.7642790933385	27.277	0.048258	27.267	27.267	27.315	-0.010126	1239	73	0.87444305	0.044176638	0.8729236	354.72754		17.920746	0.0066285	0.0018382	-0.0044411	NaN	5.6942	93	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7435	+		29518	10301	17038	17512							-0.019176095283455652
VSYDFSLL	8	Unmodified	_VSYDFSLL_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4771253362002	1	943.477125	942.469849	1.0472	0.00098796	-0.45518	-0.00042945	0.59198	0.00055852	943.4754681723206	31.934	0.16891	31.93	31.882	32.051	-0.0037613	261	46	1.4642475	0.026666999	1.462728	297.53528	0	5.4187317						104	8	2	NaN	NaN	NaN	0.76633	1	6734	6734		13.737	0	1	8936.3	+		29519	11277	17039	17513	23545	23545					-0.0036872608798148576
VSYLSLLRN	9	Unmodified	_VSYLSLLRN_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	355.5414745923	3	355.541475	1063.60259	2.1488	0.000764	6.6558	0.0023664	8.8046	0.0031304	355.5434831175599	13.925	0.071989	13.925	13.901	13.973	0	1500	31	0.71351165	0.018585265	0.71351165	434.2323	0	11.310699						65	4	3	NaN	NaN	NaN	0.56671	1	11302	11302		3.9281	0	1	4755.2			29520	2542	17040	17514	23546	23546					0.07333718368658992
VSYLSLLRN	9	Unmodified	_VSYLSLLRN_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	355.5414745923	3	355.541475	1063.60259	2.0712	0.00073639	6.8922	0.0024505	8.9634	0.0031869	355.54445063649706	13.949	0.071937	13.938	13.914	13.986	-0.010672	1503	31	0.711653	0.018587232	0.71013355	433.10117	0	11.31192						61	4	2	NaN	NaN	NaN	0.62619	1	11042	11042		2.3381	0	1	5188.2			29521	2542	17040	17514	23547	23547					0.07333718368658992
VSYTSVHQGN	10	Unmodified	_VSYTSVHQGN_					0	0	0		ENST00000309964.8_1_4:56322453-56325104:-|nuORF	ENST00000309964.8_1_4:56322453-56325104:-|nuORF	ENST00000309964.8_1_4:56322453-56325104:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2594449143501	2	546.259445	1090.50434	1.8677	0.0010203	3.2166	0.0017571	5.0843	0.0027774	546.2613635573109	22.887	0.16876	22.887	22.838	23.007	0	1260	88	0.8615505	0.053400338	0.8615505	349.445	0	21.65918						245	8	2	NaN	NaN	NaN	0.62092	1	12420	12420		13.463	1.4144	1	68139			29522	6444	17041	17515	23548	23548					-0.037295099471975846
VTAAAAIRV	9	Unmodified	_VTAAAAIRV_					0	0	0			REV__ENST00000527967.5_1_11:125932492-125932705:-|nuORF	REV__ENST00000527967.5_1_11:125932492-125932705:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	436.27162704284996	2	436.271627	870.528701	1.7379	0.00075819	-1.917	-0.00083635	-0.17914	-7.8154E-05	436.2710763445757	18.724	0.095911	18.724	18.7	18.796	0	1341	52	0.8117308	0.03142917	0.8117308	330.27405	0	12.787811						98	5	2	NaN	NaN	NaN	0.66529	1	5670	5670		2.1763	0	1	7402.7	+		29523	12636	17042	17516	23549	23549					0.0882579499698295
VTAAGHGP	8	Unmodified	_VTAAGHGP_					0	0	0			REV__ENST00000574606.2_1_17:4885017-4886297:-|nuORF	REV__ENST00000574606.2_1_17:4885017-4886297:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3627642804001	1	709.362764	708.355488	1.3427	0.00095245	-1.0279	-0.00072919	0.31473	0.00022326	709.363289908079	46.15	0.43142	46.15	46.03	46.461	0	501	85	1.3214091	0.05021739	1.3214091	269.78513	0	10.252655						543	19	2	NaN	NaN	NaN	0.84876	1	3390	3390		0.39566	0	1	83744	+		29524	12840	17043	17517	23550	23550					-0.010355710594240009
VTAAGHGP	8	Unmodified						0	0	0			REV__ENST00000574606.2_1_17:4885017-4886297:-|nuORF	REV__ENST00000574606.2_1_17:4885017-4886297:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	709.362764	708.355488	1.3427	0.00095245	-1.0279	-0.00072919	0.31473	0.00022326	709.363289908079	46.15	0.43142	46.15	46.03	46.461	0	501	85	1.3214091	0.05021739	1.3214091	269.78513		10.252655	-0.0043499	-0.00043453	-0.0010332	NaN	0.39566	543	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83744	+		29525	12840	17043	17517							-0.010355710594240009
VTAAMVIA	8	Unmodified	_VTAAMVIA_					0	0	0		ENST00000566953.5_1_16:58704043-58709925:-|nuORF;nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	ENST00000566953.5_1_16:58704043-58709925:-|nuORF	ENST00000566953.5_1_16:58704043-58709925:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	388.222756938	2	388.222757	774.430961	1.9267	0.000748	5.8203	0.0022596	7.747	0.0030076	388.22498507502615	25.708	0.072359	25.708	25.684	25.757	0	1440	118	0.7506418	0.0722509	0.7506418	306.0057	0	29.453705						197	4	4	NaN	NaN	NaN	0.62311	1	4426	4426		23.85	3.295	1	55827			29526	1408	17044	17518	23551	23551					0.034722700766337766
VTAAVPPP	8	Unmodified	_VTAAVPPP_					0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	751.4348665910001	1	751.434867	750.42759	0.74666	0.00056107	-2.8964	-0.0021765	-2.1498	-0.0016154	751.4327896066083	31.235	0.072357	31.235	31.211	31.284	0	528	55	1.3052634	0.032313585	1.3052634	266.2052	0	6.5903015						85	4	2	NaN	NaN	NaN	0.80071	1	4071	4071		9.1232	0	1	8053.3	+		29527	11783	17045	17519	23552	23552					0.04239343294284481
VTAAVPPP	8	Unmodified						0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	751.434867	750.42759	0.74666	0.00056107	-2.8964	-0.0021765	-2.1498	-0.0016154	751.4327896066083	31.235	0.072357	31.235	31.211	31.284	0	528	55	1.3052634	0.032313585	1.3052634	266.2052		6.5903015	0	0	0	NaN	9.1232	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8053.3	+		29528	11783	17045	17519							0.04239343294284481
VTAGGVGG	8	Unmodified	_VTAGGVGG_					0	0	0			REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	309.16629630410006	2	309.166296	616.31804	0.83348	0.00025769	5.2994	0.0016384	6.1329	0.0018961	309.16800464978184	39.068	0.19268	39.068	38.972	39.165	0	1518	97	0.7023569	0.059479296	0.7023569	287.59387	0	24.35498						221	9	2	NaN	NaN	NaN	0.84945	1	1049	1049		0	0	1	21357	+		29529	13508	17046	17520	23553	23553					-0.005466623250299563
VTAGGVGG	8	Unmodified	_VTAGGVGG_					0	0	0			REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	309.16629630410006	2	309.166296	616.31804	1.1554	0.00035722	5.3293	0.0016476	6.4847	0.0020049	309.1683480164557	41.738	0.096207	41.738	41.69	41.786	0	1515	34	0.7042165	0.020453751	0.7042165	288.35532	0	8.375183						82	5	2	NaN	NaN	NaN	0.84887	1	1050	1050		0.32989	0	1	6806.2	+		29530	13508	17046	17520	23554	23554					-0.005466623250299563
VTAGGVGG	8	Unmodified						0	0	0			REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	309.166296	616.31804	1.1554	0.00035722	5.3293	0.0016476	6.4847	0.0020049	309.1683480164557	41.738	0.096207	41.738	41.69	41.786	0	1515	34	0.7042165	0.020453751	0.7042165	288.35532		8.375183	0.0086877	0.00039118	0.00075972	NaN	0.32989	82	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6806.2	+		29531	13508	17046	17520							-0.005466623250299563
VTAGGVGG	8	Unmodified						0	0	0			REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	REV__tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	309.166296	616.31804	1.1832	0.00036581	4.2325	0.0013085	5.4157	0.0016743	309.1678113857307	41.713	0.14441	41.721	41.649	41.793	0.0082588	1515	40	0.7042165	0.024172664	0.70269704	288.35535		9.897949	-0.0086877	-0.00028704	-0.00075972	NaN	0.32989	113	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10299	+		29532	13508	17046	17520							-0.005466623250299563
VTAHLLGPP	9	Unmodified	_VTAHLLGPP_					0	0	0		ENST00000464833.1_1_3:184102666-184104037:+|nuORF;ENST00000460627.5_1_3:184101080-184104037:+|nuORF;ENST00000470150.5_1_3:184100608-184105741:+|nuORF;CHRD|p.F806Lfs*3|1|0.12|ENSG00000090539|chr3:184387436-184387436|C/-|frameshift_variant;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	452.7661775242001	2	452.766178	903.517802	1.5559	0.00070445	-0.12173	-5.5116E-05	1.4341	0.00064933	452.7660728833324	25.346	0.21716	25.334	25.286	25.503	-0.012011	1233	55	0.87812483	0.03313607	0.8766054	357.0857	0	13.474609						243	10	3	NaN	NaN	NaN	0.45297	1	6028	6028		11.548	0.94349	1	42324			29533	158	17047	17521	23555	23555					0.062183926227248776
VTAHLLGPP	9	Unmodified						0	0	0		ENST00000464833.1_1_3:184102666-184104037:+|nuORF;ENST00000460627.5_1_3:184101080-184104037:+|nuORF;ENST00000470150.5_1_3:184100608-184105741:+|nuORF;CHRD|p.F806Lfs*3|1|0.12|ENSG00000090539|chr3:184387436-184387436|C/-|frameshift_variant;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	ENST00000464833.1_1_3:184102666-184104037:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	452.766178	903.517802	1.3446	0.00060879	0.062098	2.8116E-05	1.4067	0.00063691	452.76622335430704	25.322	0.19302	25.322	25.274	25.467	0	1233	55	0.87812483	0.033132493	0.87812483	357.0857		13.473175	-0.0059139	6.1517E-05	0.00075972	NaN	11.548	214	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40045			29534	158	17047	17521							0.062183926227248776
VTAHVHKL	8	Unmodified	_VTAHVHKL_					0	0	0			REV__ENSG00000165030|ENST00000297689|NFIL3	REV__ENSG00000165030|ENST00000297689|NFIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.5363119701002	1	904.536312	903.529036	2.3491	0.0021249	-11.595	-0.010488	-9.2458	-0.0083631	904.5253221760196	25.37	0.096497	25.358	25.31	25.407	-0.012011	321	52	1.4286518	0.030290127	1.4271324	290.4824	0	6.158783						87	5	2	NaN	NaN	NaN	0.80692	1	6029	6029		8.2903	3.3806	1	10191	+		29535	10364	17048	17522	23556	23556					0.07341214716859668
VTAQLGGS	8	Unmodified	_VTAQLGGS_					0	0	0			REV__ENST00000263640.7_1_2:158595036-158617444:-|nuORF	REV__ENST00000263640.7_1_2:158595036-158617444:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.3886446799003	1	732.388645	731.381368	0.80935	0.00059276	5.2819	0.0038684	6.0913	0.0044612	732.3928517226057	37.338	0.14427	37.338	37.29	37.434	0	1203	43	0.8965218	0.025741875	0.8965218	182.92877	0	5.2524414						141	7	2	NaN	NaN	NaN	0.84945	1	3770	3770		0	0	1	16403	+		29536	11559	17049	17523	23557	23557					0.0049327839220723035
VTASLAGR	8	Unmodified	_VTASLAGR_					0	0	0			REV__ENST00000491523.5_1_16:89627540-89627606:+|nuORF	REV__ENST00000491523.5_1_16:89627540-89627606:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.4468282608002	1	774.446828	773.439552	1.9887	0.0015401	0.32841	0.00025434	2.3171	0.0017945	774.4476263727744	39.982	0.096375	39.988	39.939	40.036	0.0060463	591	34	1.26753	0.019786358	1.2660105	258.37146	0	4.033203						59	5	2	NaN	NaN	NaN	0.84887	1	4330	4330		0.32989	0	1	3512	+		29537	12468	17050	17524	23558	23558					0.04376960037484423
VTATGEALS	9	Unmodified	_VTATGEALS_					0	0	0			REV__nc|ENSG00000123191|P35670-3|ATP7B	REV__nc|ENSG00000123191|P35670-3|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	848.435988803	1	848.435989	847.428712	1.9941	0.0016919	-0.070661	-5.9951E-05	1.9235	0.001632	848.4355669468355	19.012	0.095922	19.012	18.988	19.084	0	468	52	1.3411216	0.030451775	1.3411216	272.95584	0	6.197815						69	5	3	NaN	NaN	NaN	0.23112	1	5356	5356		23.334	2.8858	1	4563.6	+		29538	9356	17051	17525	23559	23559					-0.0011048712748333855
VTCLVFGVIA	10	Unmodified	_VTCLVFGVIA_					0	0	0		tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	tr|U7SSJ8|U7SSJ8_FUSNUIntegralmembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01291PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.2911708542	2	511.291171	1020.56779	2.4052	0.0012297	6.4525	0.0032991	8.8576	0.0045288	511.2946074478206	25.708	0.12062	25.708	25.684	25.805	0	1281	196	0.84864825	0.11957425	0.84864825	344.50595	0	48.54074						409	6	4	NaN	NaN	NaN	0.53991	1	9404	9404		17.799	0	1	66572			29539	13831	17052	17526	23560	23560					0.058327592363411895
VTCQGSIPTEV	11	Unmodified	_VTCQGSIPTEV_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2789887256998	2	567.278989	1132.54342	2.1255	0.0012058	-2.3782	-0.0013491	-0.25263	-0.00014331	567.2776179969436	25.033	0.24128	25.033	24.985	25.226	0	1056	157	0.9863805	0.09507799	0.9863805	399.89072	0	38.545776						872	11	4	NaN	NaN	NaN	0.78138	1	14172	14172		0	0	1	166130			29540	14025	17053	17527	23561	23561					-0.017545457078767868
VTCQGSIPTEV	11	Unmodified						0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.278989	1132.54342	1.6811	0.00095367	-1.7881	-0.0010143	-0.10694	-6.0667E-05	567.2779270607085	25.033	0.21713	25.021	24.972	25.189	-0.012011	1056	154	0.9863805	0.09323448	0.9848611	399.89072		37.79843	-0.0061222	0.00034017	-0.00075972	NaN	0	908	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179700			29541	14025	17053	17527							-0.017545457078767868
VTCSISIPF	9	Unmodified	_VTCSISIPF_					0	0	0		nc|ENSG00000204290|Q9UIR0-4|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2;nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2	nc|ENSG00000204290|Q9UIR0-4|BTNL2	nc|ENSG00000204290|Q9UIR0-4|BTNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4964805698	1	966.496481	965.489204	0.98203	0.00094913	-3.5112	-0.0033936	-2.5292	-0.0024444	966.4934949438288	32.899	0.14472	32.897	32.849	32.993	-0.0024757	282	91	1.4517976	0.053348184	1.4502782	294.90414	0	10.836639						204	7	3	NaN	NaN	NaN	0.20577	1	7350	7350		24.961	4.4056	1	16799			29542	5874	17054	17528	23562	23562					0.005079069312500906
VTCSISIPF	9	Unmodified						0	0	0		nc|ENSG00000204290|Q9UIR0-4|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2;nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2	nc|ENSG00000204290|Q9UIR0-4|BTNL2	nc|ENSG00000204290|Q9UIR0-4|BTNL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	966.496481	965.489204	1.2174	0.0011767	-2.9722	-0.0028726	-1.7547	-0.001696	966.4934549168172	32.9	0.16897	32.9	32.852	33.021	0	288	88	1.4482387	0.05157268	1.4482387	294.18124		10.475983	0.0017744	0.00027468	-0.0010197	NaN	24.961	206	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20753			29543	5874	17054	17528							0.005079069312500906
VTDAPQSVP	9	Unmodified	_VTDAPQSVP_					0	0	0		ENST00000538118.5_1_12:25047396-25055084:-|nuORF	ENST00000538118.5_1_12:25047396-25055084:-|nuORF	ENST00000538118.5_1_12:25047396-25055084:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	913.4625379045001	1	913.462538	912.455261	2.3139	0.0021136	-2.872	-0.0026235	-0.55813	-0.00050983	913.4597233470215	18.194	0.19197	18.18	18.156	18.348	-0.01395	420	91	1.3697531	0.053609848	1.3682337	278.46585	0	10.898682						385	9	3	NaN	NaN	NaN	0.31737	1	6153	6153		17.799	0.018654	1	40711			29544	7484	17055	17529	23563	23563					-0.004467982361347822
VTDKTGAPVE	10	Unmodified	_VTDKTGAPVE_					0	0	0		ENST00000406381.6_1_17:37851218-37863260:+|nuORF	ENST00000406381.6_1_17:37851218-37863260:+|nuORF	ENST00000406381.6_1_17:37851218-37863260:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.7665714547	2	508.766571	1015.51859	1.8768	0.00095484	-0.047945	-2.4393E-05	1.8288	0.00093045	508.76473947950524	16.014	0.096035	16.014	15.966	16.062	0	1302	34	0.8357362	0.020296931	0.8357362	339.28683	0	8.240021						49	5	2	NaN	NaN	NaN	0.62764	1	9196	9196		13.003	0.95414	1	6385.8			29545	6847	17056	17530	23564	23564					0.011451424810957178
VTDVGELIL	9	Unmodified	_VTDVGELIL_					0	0	0			REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF	REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	958.5455392524003	1	958.545539	957.538263	1.3742	0.0013172	8.291	0.0079473	9.6652	0.0092645	958.55571125052	31.645	0.048275	31.64	31.616	31.664	-0.0044174	264	46	1.4624695	0.026666999	1.46095	297.1066	0	5.417511						55	3	2	NaN	NaN	NaN	0.29681	1	7145	7145		19.118	0	1	3843.2	+		29546	9058	17057	17531	23565	23565					0.05779518491885938
VTDVGELIL	9	Unmodified						0	0	0			REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF	REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	958.545539	957.538263	1.3742	0.0013172	8.291	0.0079473	9.6652	0.0092645	958.55571125052	31.645	0.048275	31.64	31.616	31.664	-0.0044174	264	46	1.4624695	0.026666999	1.46095	297.1066		5.417511	-0.014815	-0.00013513	-0.0025376	NaN	19.118	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3843.2	+		29547	9058	17057	17531							0.05779518491885938
VTDVIATLL	9	Unmodified	_VTDVIATLL_					0	0	0		ENSG00000167286|ENST00000300692|CD3D	ENSG00000167286|ENST00000300692|CD3D	ENSG00000167286|ENST00000300692|CD3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5662746945003	1	944.566275	943.558998	1.6007	0.0015119	-2.708	-0.0025579	-1.1074	-0.001046	944.5647664519909	29.618	0.048227	29.61	29.586	29.635	-0.0070648	276	43	1.4553556	0.024901152	1.4538362	295.72354	0	5.0598145						52	3	2	NaN	NaN	NaN	0.094712	1	6778	6778		36.586	6.9881	1	5750.7			29548	4539	17058	17532	23566	23566					0.08496108871543129
VTEAGELLL	9	Unmodified	_VTEAGELLL_					0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.5298891882002	1	944.529889	943.522613	1.2717	0.0012011	-2.585	-0.0024416	-1.3134	-0.0012405	944.5271480260927	29.69	0.14477	29.683	29.635	29.779	-0.0070648	267	85	1.4606913	0.04979694	1.4591719	296.8079	0	10.118591						167	7	2	NaN	NaN	NaN	0.03623	1	6773	6773		52.758	2.9254	1	18144	+		29549	11315	17059	17533	23567	23567					0.04859231974819522
VTEAGELLL	9	Unmodified						0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	944.529889	943.522613	1.5375	0.0014522	-1.2919	-0.0012202	0.24562	0.000232	944.5282296386382	29.691	0.12066	29.691	29.667	29.787	0	270	73	1.458913	0.042692184	1.458913	296.44653		8.674896	0.0039612	0.00056917	-0.00012946	NaN	52.758	142	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15647	+		29550	11315	17059	17533							0.04859231974819522
VTEAGELLL	9	Unmodified						0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	944.529889	943.522613	1.2717	0.0012011	-2.585	-0.0024416	-1.3134	-0.0012405	944.5271480260927	29.69	0.14477	29.683	29.635	29.779	-0.0070648	267	85	1.4606913	0.04979694	1.4591719	296.8079		10.118591	-0.0039612	-0.00065227	0.00012946	NaN	52.758	167	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18144	+		29551	11315	17059	17533							0.04859231974819522
VTEGVIAVI	9	Unmodified	_VTEGVIAVI_					0	0	0			REV__ENSG00000159248|ENST00000290374|GJD2	REV__ENSG00000159248|ENST00000290374|GJD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	900.5400599440001	1	900.54006	899.532783	1.3906	0.0012523	0.15415	0.00013882	1.5448	0.0013911	900.540255980439	32.297	0.12068	32.297	32.225	32.345	0	339	49	1.4179583	0.028524995	1.4179583	288.3273	0	5.8002625						211	6	3	NaN	NaN	NaN	0.12945	1	6073	6073		31.561	0	1	23665	+		29552	10181	17060	17534	23568	23568					0.07899839700041866
VTELPCSL	8	Unmodified	_VTELPCSL_					0	0	0			REV__nc|ENSG00000013573|Q96FC9|DDX11	REV__nc|ENSG00000013573|Q96FC9|DDX11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	861.4386313399001	1	861.438631	860.431355	1.6847	0.0014513	-9.6531	-0.0083155	-7.9684	-0.0068642	861.4301062439422	20.766	0.21693	20.766	20.718	20.935	0	450	67	1.3518641	0.0393852	1.3518641	275.07593	0	8.014038						271	10	3	NaN	NaN	NaN	0.54545	1	5536	5536		28.667	1.3703	1	33946	+		29553	13079	17061	17535	23569	23569					-0.004443549941697711
VTELPCSL	8	Unmodified						0	0	0			REV__nc|ENSG00000013573|Q96FC9|DDX11	REV__nc|ENSG00000013573|Q96FC9|DDX11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	861.438631	860.431355	1.6847	0.0014513	-9.6531	-0.0083155	-7.9684	-0.0068642	861.4301062439422	20.766	0.21693	20.766	20.718	20.935	0	450	67	1.3518641	0.0393852	1.3518641	275.07593		8.014038	0.0068908	-0.00023289	-0.00013516	NaN	28.667	271	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33946	+		29554	13079	17061	17535							-0.004443549941697711
VTELPCSL	8	Unmodified						0	0	0			REV__nc|ENSG00000013573|Q96FC9|DDX11	REV__nc|ENSG00000013573|Q96FC9|DDX11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	861.438631	860.431355	0.92561	0.00079736	-9.0977	-0.0078371	-8.1721	-0.0070397	861.4305013498132	20.766	0.19266	20.752	20.704	20.897	-0.014086	447	70	1.3536539	0.04117322	1.3521345	275.4401		8.377869	-0.0068908	0.00024555	0.00013516	NaN	28.667	289	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35417	+		29555	13079	17061	17535							-0.004443549941697711
VTEQYEEVDQ	10	Unmodified	_VTEQYEEVDQ_					0	0	0		nc|ENSG00000168334|Q702N8-3|XIRP1;ENSG00000168334|ENST00000340369|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.85070209143333	3	413.850702	1238.53028	1.799	0.00074451	-7.2648	-0.0030065	-5.4658	-0.002262	413.8475330877285	18.988	0.072056	18.988	18.94	19.012	0	1425	31	0.7599118	0.01853484	0.7599118	461.63626	0	11.259705						65	4	3	NaN	NaN	NaN	0.73444	1	17483	17483		2.7042	0	1	5332.1			29556	4614	17062	17536	23570	23570					-0.07944705286217868
VTGDDVLIF	9	Unmodified	_VTGDDVLIF_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	978.5142391240001	1	978.514239	977.506963	1.4137	0.0013833	-3.0514	-0.0029858	-1.6377	-0.0016025	978.5115527693844	32.924	0.096504	32.921	32.897	32.993	-0.0024757	258	49	1.4660252	0.028446317	1.4645058	297.7427	0	5.777313						152	5	3	NaN	NaN	NaN	0.062072	1	7658	7658		41.785	2.3258	1	23837	+		29557	8745	17063	17537	23571	23571					0.017309454577684846
VTGGGSSS	8	Unmodified	_VTGGGSSS_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.2944099437001	1	651.29441	650.287133	0.83085	0.00054113	3.0471	0.0019846	3.878	0.0025257	651.2960698075526	29.207	0.12068	29.2	29.175	29.296	-0.0077209	714	94	1.1936152	0.056042433	1.1920958	244.10649	0	11.461243						171	6	2	NaN	NaN	NaN	0.84455	1	1963	1963		2.7852	0	1	16782	+		29558	8139	17064	17538	23572	23572					-0.05199860429934233
VTGGGSSS	8	Unmodified						0	0	0			REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	651.29441	650.287133	1.2506	0.0008145	1.8212	0.0011861	3.0718	0.0020006	651.2959775371345	29.208	0.12067	29.208	29.16	29.28	0	717	55	1.1918083	0.032525063	1.1918083	243.73698		6.651703	0.0042494	-0.00050455	-0.00014371	NaN	2.7852	174	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13371	+		29559	8139	17064	17538							-0.05199860429934233
VTGGGSSS	8	Unmodified						0	0	0			REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-7|ARHGAP17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	651.29441	650.287133	0.83085	0.00054113	3.0471	0.0019846	3.878	0.0025257	651.2960698075526	29.207	0.12068	29.2	29.175	29.296	-0.0077209	714	94	1.1936152	0.056042433	1.1920958	244.10649		11.461243	-0.0042494	0.00029389	0.00014371	NaN	2.7852	171	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16782	+		29560	8139	17064	17538							-0.05199860429934233
VTGGHGAA	8	Unmodified	_VTGGHGAA_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.331464152	1	669.331464	668.324188	1.111	0.00074361	-8.8703	-0.0059372	-7.7593	-0.0051935	669.3256091510077	40.03	0.2164	40.036	40.036	40.252	0.0060501	759	85	1.1664921	0.05066502	1.1649727	238.42702	0	10.355774						246	10	2	NaN	NaN	NaN	0.84887	1	2459	2459		0.32989	0	1	26583			29561	4663	17065	17539	23573	23573					-0.023241440935294122
VTGGHGAA	8	Unmodified						0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	669.331464	668.324188	0.76959	0.00051511	-9.3795	-0.006278	-8.6099	-0.0057629	669.3251531496411	40.296	0.096249	40.296	40.248	40.344	0	753	58	1.1701111	0.034374356	1.1701111	239.16672		7.026001	0.13023	-0.00021949	0.0025692	NaN	0.32989	106	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9796.2			29562	4663	17065	17539							-0.023241440935294122
VTGISILI	8	Unmodified	_VTGISILI_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.5236815983002	1	815.523682	814.516405	1.9713	0.0016077	-0.74575	-0.00060818	1.2256	0.00099947	815.523099490368	32.225	0.21719	32.225	32.177	32.394	0	426	142	1.3661768	0.084145546	1.3661768	278.2346	0	17.137024						591	10	4	NaN	NaN	NaN	0.09307	1	4953	4953		65.672	0	1	209800	+		29563	10037	17066	17540	23574	23574					0.10172758533963133
VTGLAKRT	8	Unmodified	_VTGLAKRT_					0	0	0			REV__ENST00000524244.5_1_5:159849319-159849927:+|nuORF	REV__ENST00000524244.5_1_5:159849319-159849927:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	845.5203275549001	1	845.520328	844.513051	1.0767	0.00091034	-3.1792	-0.0026881	-2.1025	-0.0017777	845.5179926657266	31.114	0.072426	31.109	31.06	31.133	-0.0050716	387	43	1.389409	0.025001884	1.3878895	282.7993	0	5.088867						76	4	2	NaN	NaN	NaN	0.80071	1	5192	5192		9.1232	0	1	6566.1	+		29564	10343	17067	17541	23575	23575					0.08457508479943954
VTGLIVTL	8	Unmodified	_VTGLIVTL_					0	0	0			REV__nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	REV__nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.5236815983002	1	815.523682	814.516405	1.6989	0.0013855	-0.59482	-0.00048509	1.1041	0.00090043	815.5238987699353	30.56	0.14483	30.56	30.487	30.632	0	450	52	1.3518641	0.03041935	1.3518641	275.31967	0	6.1951904						136	7	2	NaN	NaN	NaN	0.39717	1	4952	4952		36.586	0	1	11492	+		29565	9754	17068	17542	23576	23576					0.10172758533963133
VTGRILLI	8	Unmodified	_VTGRILLI_					0	0	0		tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	884.5927642165003	1	884.592764	883.585488	0.080167	7.0915E-05	3.2837	0.0029047	3.3638	0.0029756	884.5958111806115	58.171	0.047939	58.17	58.146	58.194	-0.00048065	291	49	1.446459	0.028476596	1.4449396	294.2026	0	5.791992						60	3	2	NaN	NaN	NaN	0.84945	1	5732	5732		0	0	1	5653.9			29566	13919	17069	17543	23577	23577					0.1390384255353183
VTGRLPAG	8	Unmodified	_VTGRLPAG_					0	0	0			REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4519136387001	1	770.451914	769.444637	1.0245	0.00078931	6.3087	0.0048606	7.3332	0.0056499	770.4563391714319	31.187	0.048304	31.187	31.163	31.211	0	576	40	1.2765218	0.023371339	1.2765218	260.22787	0	4.7644043						46	3	2	NaN	NaN	NaN	0.84727	1	4351	4351		1.2418	0	1	3905.3	+		29567	12345	17070	17544	23578	23578					0.05069263900099941
VTGRLPAG	8	Unmodified						0	0	0			REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	770.451914	769.444637	1.0245	0.00078931	6.3087	0.0048606	7.3332	0.0056499	770.4563391714319	31.187	0.048304	31.187	31.163	31.211	0	576	40	1.2765218	0.023371339	1.2765218	260.22787		4.7644043	0.015114	0.00034979	-0.00013918	NaN	1.2418	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3905.3	+		29568	12345	17070	17544							0.05069263900099941
VTGRLPAG	8	Unmodified						0	0	0			REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	770.451914	769.444637	1.8552	0.0014293	5.4763	0.0042193	7.3315	0.0056486	770.4560406497654	31.162	0.072372	31.157	31.133	31.205	-0.0050716	573	37	1.2783196	0.021572351	1.2768002	260.59436		4.3976746	-0.015114	-0.00029154	0.00013918	NaN	1.2418	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3823	+		29569	12345	17070	17544							0.05069263900099941
VTGSAVTS	8	Unmodified	_VTGSAVTS_					0	0	0			REV__ENSG00000134697|ENST00000373062|GNL2	REV__ENSG00000134697|ENST00000373062|GNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3726602647001	1	721.37266	720.365384	1.5403	0.0011111	4.5653	0.0032933	6.1056	0.0044044	721.3765556353791	30.993	0.072393	30.988	30.964	31.036	-0.0050716	627	40	1.24593	0.023413777	1.2444105	254.29446	0	4.778763						54	4	2	NaN	NaN	NaN	0.84887	1	3523	3523		0.32989	0	1	4568.5	+		29570	9593	17071	17545	23579	23579					-0.005984278447044744
VTGSSKGS	8	Unmodified	_VTGSSKGS_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3679092378002	1	722.367909	721.360633	1.5804	0.0011416	2.4242	0.0017511	4.0046	0.0028928	722.3712004990296	23.586	0.2168	23.586	23.538	23.754	0	615	94	1.2531329	0.05581498	1.2531329	255.75804	0	11.391571						260	10	3	NaN	NaN	NaN	0.84512	1	3617	3617		2.4615	0	1	37182	+		29571	9728	17072	17546	23580	23580					-0.01119311987463334
VTGSSSLI	8	Unmodified	_VTGSSSLI_					0	0	0		ENST00000371068.10_2_6:52344440-52344485:+|nuORF	ENST00000371068.10_2_6:52344440-52344485:+|nuORF	ENST00000371068.10_2_6:52344440-52344485:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.4196104573001	1	763.41961	762.412334	1.2473	0.00095225	6.114	0.0046676	7.3613	0.0056198	763.4237926556841	30.608	0.09655	30.608	30.584	30.68	0	555	52	1.2891023	0.030539632	1.2891023	262.83496	0	6.2267456						111	5	2	NaN	NaN	NaN	0.82797	1	4247	4247		5.4659	0	1	11813			29572	6653	17073	17547	23581	23581					0.021624317064379284
VTGVHEEAT	9	Unmodified	_VTGVHEEAT_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.72998898315	2	471.729989	941.445425	1.4394	0.000679	0.51592	0.00024337	1.9553	0.00092238	471.73042451631085	19.444	0.12	19.444	19.396	19.516	0	1377	37	0.7895419	0.022198498	0.7895419	320.8701	0	9.021484						71	6	2	NaN	NaN	NaN	0.62619	1	6840	6840		4.4131	2.2368	1	4431.3			29573	6157	17074	17548	23582	23582					-0.027639862415185235
VTHTWSMEE	9	Unmodified	_VTHTWSMEE_					0	0	0		ENST00000361236.7_2_11:102267852-102267975:-|nuORF	ENST00000361236.7_2_11:102267852-102267975:-|nuORF	ENST00000361236.7_2_11:102267852-102267975:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2424062541501	2	560.242406	1118.47026	1.0903	0.00061086	7.4781	0.0041895	8.5684	0.0048004	560.2465253829042	27.325	0.096519	27.315	27.267	27.363	-0.010124	1230	79	0.8799654	0.047873557	0.878446	356.80267	0	19.411469						203	5	3	NaN	NaN	NaN	0.39244	1	13199	13199		14.042	4.2956	1	35722			29574	6603	17075	17549	23583	23583					-0.08423674430446226
VTIRRFKKT	9	Unmodified	_VTIRRFKKT_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6-SPAST|1|fusion;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.86675723605	2	574.866757	1147.71896	0.73755	0.00042399	5.9625	0.0034276	6.7	0.0038516	575.3723426652607	53.85	0.048141	53.849	53.849	53.897	-0.00059509	1143	25	0.9332562	0.0146763325	0.93173677	378.29327	0	5.949005						26	3	2	NaN	NaN	NaN	0.6862	1	14245	14245		0.19249	0	1	1908.2			29575	2037	17076	17550	23584	23584					0.15101081659213378
VTLAFMSVDI	10	Unmodified	_VTLAFMSVDI_					0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.2913678194501	2	548.291368	1094.56818	1.089	0.00059712	-5.2555	-0.0028815	-4.1664	-0.0022844	548.288140628161	28.387	0.072382	28.378	28.33	28.402	-0.0089779	1212	67	0.8910048	0.040473342	0.88948536	361.37494	0	16.415222						163	4	3	NaN	NaN	NaN	0.56921	1	12282	12282		16.584	2.5426	1	22420			29576	3719	17077	17551	23585	23585					0.02468134165542324
VTLAFMSVDI	10	Unmodified						0	0	0		nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF;nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-7|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	nc|ENSG00000150967|Q9NP78-3|ABCB9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.291368	1094.56818	1.3687	0.00075043	-3.6937	-0.0020252	-2.325	-0.0012748	548.7905628703073	28.556	0.096548	28.556	28.508	28.605	0	1218	61	0.8873258	0.03680587	0.8873258	359.8828		14.927765	0.089315	0.00082262	-0.0010798	NaN	16.584	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14116			29577	3719	17077	17551							0.02468134165542324
VTLDFHYN	8	Unmodified	_VTLDFHYN_					0	0	0		ENST00000511084.1_1_5:143901923-143902400:+|nuORF	ENST00000511084.1_1_5:143901923-143902400:+|nuORF	ENST00000511084.1_1_5:143901923-143902400:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.74289939314997	2	504.742899	1007.47125	1.2566	0.00063427	6.5373	0.0032996	7.7939	0.0039339	504.746747800654	24.623	0.16888	24.61	24.489	24.658	-0.012394	1308	34	0.83204526	0.020301342	0.8305259	337.82446	0	8.242676						105	8	2	NaN	NaN	NaN	0.80692	1	8703	8703		8.2903	0	1	8060.4			29578	7354	17078	17552	23586	23586					-0.03219091999244483
VTLNSCSIF	9	Unmodified	_VTLNSCSIF_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.24696031580004	2	492.24696	982.479368	1.7668	0.00086972	-6.3786	-0.0031399	-4.6118	-0.0022701	492.24392096298214	22.236	0.096449	22.236	22.187	22.284	0	1335	37	0.8154261	0.02216971	0.8154261	331.1903	0	9.004364						107	5	3	NaN	NaN	NaN	0.56377	1	7962	7962		6.9844	1.2902	1	9213.1	+		29579	10626	17079	17553	23587	23587					-0.012572810741176
VTLNSCSIF	9	Unmodified						0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	492.24696	982.479368	1.7668	0.00086972	-6.3786	-0.0031399	-4.6118	-0.0022701	492.24392096298214	22.236	0.096449	22.236	22.187	22.284	0	1335	37	0.8154261	0.02216971	0.8154261	331.1903		9.004364	0.019145	-0.0010849	0.00075972	NaN	6.9844	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9213.1	+		29580	10626	17079	17553							-0.012572810741176
VTLNSCSIF	9	Unmodified						0	0	0			REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-4|RXFP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	492.24696	982.479368	0.74084	0.00036467	-4.4793	-0.0022049	-3.7385	-0.0018403	492.2449397636849	22.211	0.16886	22.197	22.149	22.318	-0.013731	1335	34	0.8154261	0.020323336	0.81390667	331.19028		8.254425	-0.019145	0.00078498	-0.00075972	NaN	6.9844	108	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10175	+		29581	10626	17079	17553							-0.012572810741176
VTLSGGNI	8	Unmodified	_VTLSGGNI_					0	0	0		sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	760.4199448083001	1	760.419945	759.412668	0.96691	0.00073526	2.0737	0.0015768	3.0406	0.0023121	760.4215945014555	31.042	0.096556	31.042	30.994	31.091	0	549	49	1.292695	0.028744817	1.292695	263.5859	0	5.861145						71	5	2	NaN	NaN	NaN	0.65542	1	4209	4209		21.835	2.7167	1	5593.9			29582	13686	17080	17554	23588	23588					0.023338514262945864
VTLSRRRQGK	10	Unmodified	_VTLSRRRQGK_					0	0	0			REV__nc|ENSG00000176840|Q8N6C7-2|MIR7-3HG	REV__nc|ENSG00000176840|Q8N6C7-2|MIR7-3HG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.9143054012334	3	400.914305	1199.72109	0.54743	0.00021947	-0.33533	-0.00013444	0.2121	8.5034E-05	400.9143225780459	41.089	0.072075	41.089	41.017	41.089	0	1431	46	0.75620437	0.027809858	0.75620437	459.54755	0	16.900116						87	4	2	NaN	NaN	NaN	0.77514	1	16478	16478		1.6985	0	1	7306.9	+		29583	13179	17081	17555	23589	23589					0.12921510397040947
VTLSRRRQGK	10	Unmodified						0	0	0			REV__nc|ENSG00000176840|Q8N6C7-2|MIR7-3HG	REV__nc|ENSG00000176840|Q8N6C7-2|MIR7-3HG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	400.914305	1199.72109	0.54743	0.00021947	-0.33533	-0.00013444	0.2121	8.5034E-05	400.9143225780459	41.089	0.072075	41.089	41.017	41.089	0	1431	46	0.75620437	0.027809858	0.75620437	459.54755		16.900116	-0.12361	0.00018128	0.00075972	NaN	1.6985	87	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7306.9	+		29584	13179	17081	17555							0.12921510397040947
VTLTHTWL	8	Unmodified	_VTLTHTWL_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.5356432681	1	970.535643	969.528367	0.91231	0.00088543	-0.83531	-0.0008107	0.076996	7.4728E-05	970.5366256110352	51.252	0.047894	51.252	51.228	51.276	0.00017166	219	31	1.4891195	0.01775074	1.4876001	302.46762	0	3.6054993						33	3	2	NaN	NaN	NaN	0.82332	1	7454	7454		6.0903	0	1	1888.8	+		29585	8749	17082	17556	23590	23590					0.04238375277122941
VTLTTGSG	8	Unmodified	_VTLTTGSG_					0	0	0			REV__CON__Q1RMN8	REV__CON__Q1RMN8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.3883103289002	1	735.38831	734.381034	1.3375	0.0009836	5.8341	0.0042903	7.1716	0.0052739	735.3922456587912	36.591	0.19275	36.591	36.543	36.736	0	585	70	1.2711272	0.041380167	1.2711272	259.34482	0	8.442688						270	9	3	NaN	NaN	NaN	0.84727	1	3819	3819		1.2418	0	1	33967	+	+	29586	8271	17083	17557	23591	23591					0.003218586723505723
VTMTENYTF	9	Unmodified	_VTMTENYTF_					0	0	0			REV__nc|ENSG00000143106|P28066-2|PSMA5	REV__nc|ENSG00000143106|P28066-2|PSMA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.2471572810499	2	553.247157	1104.47976	1.0513	0.00058161	-1.9087	-0.001056	-0.85743	-0.00047437	553.2460377758794	28.145	0.14483	28.137	28.112	28.257	-0.0089798	1278	52	0.85049206	0.031334043	0.8489726	344.90524	0	12.707092						185	7	3	NaN	NaN	NaN	0.51576	1	12667	12667		8.962	0	1	17635	+		29587	9859	17084	17558	23592	23592					-0.06829906144957931
VTMTENYTF	9	Unmodified						0	0	0			REV__nc|ENSG00000143106|P28066-2|PSMA5	REV__nc|ENSG00000143106|P28066-2|PSMA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	553.247157	1104.47976	1.4416	0.00079754	-2.4044	-0.0013302	-0.96282	-0.00053268	553.2456575201916	28.146	0.16893	28.146	28.098	28.267	0	1278	55	0.85049206	0.033179045	0.85049206	344.90524		13.455322	0.0048472	-0.00031661	0.00075972	NaN	8.962	147	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12654	+		29588	9859	17084	17558							-0.06829906144957931
VTMTENYTF	9	Unmodified						0	0	0			REV__nc|ENSG00000143106|P28066-2|PSMA5	REV__nc|ENSG00000143106|P28066-2|PSMA5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.247157	1104.47976	1.0513	0.00058161	-1.9087	-0.001056	-0.85743	-0.00047437	553.2460377758794	28.145	0.14483	28.137	28.112	28.257	-0.0089798	1278	52	0.85049206	0.031334043	0.8489726	344.90524		12.707092	-0.0048472	0.00023187	-0.00075972	NaN	8.962	185	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17635	+		29589	9859	17084	17558							-0.06829906144957931
VTNAVDILV	9	Unmodified	_VTNAVDILV_					0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.5458736034002	1	943.545874	942.538597	1.797	0.0016955	0.33941	0.00032025	2.1364	0.0020158	943.5459647424833	27.325	0.24131	27.315	27.267	27.508	-0.010124	285	166	1.4500183	0.097997665	1.4484988	294.6436	0	19.913116						729	11	3	NaN	NaN	NaN	0.024221	1	6757	6757		66.656	5.3852	1	317410	+		29590	11425	17085	17559	23593	23593					0.0650293821172454
VTNAVDILV	9	Unmodified						0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	943.545874	942.538597	1.7787	0.0016783	0.28367	0.00026765	2.0624	0.001946	943.5465208340648	27.302	0.24136	27.302	27.253	27.495	0	288	169	1.4482387	0.09978473	1.4482387	294.28198		20.276245	-0.0066305	-2.5748E-05	-0.00013003	NaN	66.656	772	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329290	+		29591	11425	17085	17559							0.0650293821172454
VTNAVDILV	9	Unmodified						0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	943.545874	942.538597	1.797	0.0016955	0.33941	0.00032025	2.1364	0.0020158	943.5459647424833	27.325	0.24131	27.315	27.267	27.508	-0.010124	285	166	1.4500183	0.097997665	1.4484988	294.6436		19.913116	0.0066305	2.6847E-05	0.00013003	NaN	66.656	729	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317410	+		29592	11425	17085	17559							0.0650293821172454
VTNGPFIM	8	Unmodified	_VTNGPFIM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	878.4440510688	1	878.444051	877.436775	2.0286	0.001782	-1.265	-0.0011112	0.76361	0.00067079	878.4422694049773	26.312	0.12068	26.312	26.263	26.384	0	396	55	1.3840506	0.032162428	1.3840506	281.53928	0	6.542389						150	6	2	NaN	NaN	NaN	0.084194	1	5767	5767		68.108	26.648	1	18663			29593	406	17086	17560	23594	23594					-0.006846314116955909
VTNGPFIM	8	Unmodified	_VTNGPFIM_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	878.4440510688	1	878.444051	877.436775	1.5052	0.0013222	0.030271	2.6591E-05	1.5355	0.0013488	878.4438771066123	26.311	0.16889	26.3	26.252	26.421	-0.011135	396	61	1.3840506	0.035728455	1.3825312	281.53928	0	7.267761						179	8	2	NaN	NaN	NaN	0.27223	1	5642	5642		44.302	0.055481	1	21003			29594	406	17086	17560	23595	23595					-0.006846314116955909
VTNGPFIM	8	Oxidation (M)	_VTNGPFIM(Oxidation (M))_		VTNGPFIM(1)		VTNGPFIM(53)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	894.4389656909001	1	894.438966	893.431689	1.5434	0.0013805	-0.017421	-1.5582E-05	1.526	0.0013649	894.438983146795	21.248	0.14452	21.248	21.175	21.32	0	402	52	1.3804773	0.03037405	1.3804773	280.73483	0	6.17688						172	7	3	NaN	NaN	NaN	0.15767	1	5970	5970		53.324	17.287	1	14253			29595	406	17086	17561	23596	23596		38			-0.019289352743157906
VTNGPFIM	8	Oxidation (M)	_VTNGPFIM(Oxidation (M))_		VTNGPFIM(1)		VTNGPFIM(61)	0	0	1		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4389656909001	1	894.438966	893.431689	1.2725	0.0011382	0.18087	0.00016178	1.4534	0.0013	894.4390377850457	21.248	0.19252	21.234	21.162	21.354	-0.014004	402	52	1.3804773	0.03037405	1.3789579	280.73483	0	6.17688						208	9	3	NaN	NaN	NaN	0.11528	1	5856	5856		61.271	26.832	1	16451			29596	406	17086	17561	23597	23597		38			-0.019289352743157906
VTNVFENFQLR	11	Unmodified	_VTNVFENFQLR_					0	0	0			REV__ENSG00000122644|ENST00000651779|ARL4A	REV__ENSG00000122644|ENST00000651779|ARL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.24197624516665	3	456.241976	1365.7041	0.83691	0.00038183	7.4849	0.0034149	8.3218	0.0037968	456.2447506755091	20.429	0.0721	20.429	20.405	20.477	0	1341	31	0.8117308	0.018476725	0.8117308	492.6098	0	11.21286						87	4	3	NaN	NaN	NaN	0.7072	1	19755	19755		3.0365	0.47597	1	9456.5	+		29597	9348	17087	17562	23598	23598					0.03587545000550563
VTPAGGGG	8	Unmodified	_VTPAGGGG_					0	0	0		ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	ENST00000441740.6_2_19:47920605-47922558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.3096660774002	1	615.309666	614.30239	0.65488	0.00040295	0.85585	0.00052661	1.5107	0.00092956	615.3109854097924	26.625	0.12066	26.614	26.59	26.711	-0.010643	1155	58	0.92591566	0.034876943	0.9243962	189.5874	0	7.1412964						165	6	2	NaN	NaN	NaN	0.84887	1	917	917		0.32989	0	1	18821			29598	7008	17088	17563	23599	23599					-0.020189488420783164
VTPFRHVF	8	Unmodified	_VTPFRHVF_					0	0	0			REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	REV__ENST00000588167.1_1_18:12009921-12028151:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.77961925045	2	501.779619	1001.54469	1.2714	0.00063795	-2.233	-0.0011205	-0.96158	-0.0004825	501.7769542889036	34.805	0.12047	34.804	34.732	34.853	-0.0006485	1299	58	0.8375814	0.03504312	0.83606195	340.09937	0	14.229248						103	6	2	NaN	NaN	NaN	0.84455	1	8487	8487		2.7852	0	1	8409.6	+		29599	9820	17089	17564	23600	23600					0.043975012338933084
VTPGGGGGS	9	Unmodified	_VTPGGGGGS_					0	0	0			REV__ENSG00000146834|ENST00000310512|MEPCE	REV__ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.3260444231001	1	688.326044	687.318768	1.4926	0.0010274	6.2433	0.0042974	7.7359	0.0053248	688.3311919285163	32.056	0.072395	32.056	32.032	32.104	0	684	79	1.2116731	0.046955585	1.2116731	247.52446	0	9.592224						74	4	2	NaN	NaN	NaN	0.63698	1	2976	2976		3.9685	0.81517	1	4951	+		29600	9951	17090	17565	23601	23601					-0.037398676759835325
VTPGGGGGS	9	Unmodified						0	0	0			REV__ENSG00000146834|ENST00000310512|MEPCE	REV__ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	688.326044	687.318768	1.4926	0.0010274	6.2433	0.0042974	7.7359	0.0053248	688.3311919285163	32.056	0.072395	32.056	32.032	32.104	0	684	79	1.2116731	0.046955585	1.2116731	247.52446		9.592224	0.014508	-0.00062428	0.00075972	NaN	3.9685	74	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4951	+		29601	9951	17090	17565							-0.037398676759835325
VTPGGGGGS	9	Unmodified						0	0	0			REV__ENSG00000146834|ENST00000310512|MEPCE	REV__ENSG00000146834|ENST00000310512|MEPCE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	688.326044	687.318768	0.96163	0.00066192	7.6105	0.0052385	8.5721	0.0059004	688.3308505666106	32.031	0.12066	32.027	32.003	32.123	-0.0037613	684	73	1.2116731	0.043329716	1.2101537	247.52446		8.851517	-0.014508	0.00031677	-0.00075972	NaN	3.9685	111	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7235.8	+		29602	9951	17090	17565							-0.037398676759835325
VTPGSGNG	8	Unmodified	_VTPGSGNG_					0	0	0			REV__ENST00000422506.5_1_22:24056493-24059433:-|nuORF	REV__ENST00000422506.5_1_22:24056493-24059433:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	688.3260444231001	1	688.326044	687.318768	0.96163	0.00066192	7.6105	0.0052385	8.5721	0.0059004	688.3308505666106	32.031	0.12066	32.027	32.003	32.123	-0.0037613	684	73	1.2116731	0.043329716	1.2101537	247.52446	0	8.851517						111	6	2	NaN	NaN	NaN	0.84455	1	2896	2896		2.7852	0	1	7235.8	+		29603	12115	17091	17566	23602	23602					-0.037398676759835325
VTPGVGGL	8	Unmodified	_VTPGVGGL_					0	0	0			REV__NOTCH1|p.S647Pfs*123|1|0.56|ENSG00000148400|chr9:136515359-136515365|GGCTGCT/-|frameshift_variant	REV__NOTCH1|p.S647Pfs*123|1|0.56|ENSG00000148400|chr9:136515359-136515365|GGCTGCT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.4035664626002	1	699.403566	698.39629	1.6851	0.0011786	3.9531	0.0027648	5.6382	0.0039434	699.4066187311596	18.125	0.072006	18.125	18.101	18.173	0	648	43	1.2333171	0.025232434	1.2333171	251.86794	0	5.152954						73	4	2	NaN	NaN	NaN	0.84945	1	3200	3200		0	0	1	5988.7	+		29604	13272	17092	17567	23603	23603					0.03502770260206489
VTPLAEDK	8	Unmodified	_VTPLAEDK_					0	0	0			REV__chr1:11957014-11958516|341|10.48|0.15|6.08|+|0|PLOD1,PLOD1|1	REV__chr1:11957014-11958516|341|10.48|0.15|6.08|+|0|PLOD1,PLOD1|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.4723743093	1	872.472374	871.465098	1.3773	0.0012017	-4.5199	-0.0039435	-3.1426	-0.0027418	872.469166939324	27.398	0.072433	27.398	27.374	27.446	0	387	58	1.389409	0.033929467	1.389409	282.65918	0	6.902527						85	4	2	NaN	NaN	NaN	0.75561	1	5677	5677		15.175	1.1338	1	6738	+		29605	8201	17093	17568	23604	23604					0.024223897692309038
VTPLAEDK	8	Unmodified						0	0	0			REV__chr1:11957014-11958516|341|10.48|0.15|6.08|+|0|PLOD1,PLOD1|1	REV__chr1:11957014-11958516|341|10.48|0.15|6.08|+|0|PLOD1,PLOD1|1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.472374	871.465098	1.3773	0.0012017	-4.5199	-0.0039435	-3.1426	-0.0027418	872.469166939324	27.398	0.072433	27.398	27.374	27.446	0	387	58	1.389409	0.033929467	1.389409	282.65918		6.902527	0	0	0	NaN	15.175	85	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6738	+		29606	8201	17093	17568							0.024223897692309038
VTPSPPGN	8	Unmodified	_VTPSPPGN_					0	0	0		nc|ENSG00000172367|Q86UT5-4|NHERF4;nc|ENSG00000172367|Q86UT5|NHERF4	nc|ENSG00000172367|Q86UT5-4|NHERF4	nc|ENSG00000172367|Q86UT5-4|NHERF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	768.3886446799	1	768.388645	767.381368	1.386	0.001065	-0.17595	-0.0001352	1.21	0.00092975	768.3892435608064	22.211	0.0965	22.197	22.173	22.27	-0.013731	576	55	1.2765218	0.032361984	1.2750024	260.24017	0	6.597534						110	5	2	NaN	NaN	NaN	0.76406	1	4247	4247		14.042	3.4366	1	13385			29607	7982	17094	17569	23605	23605					-0.011627216078068159
VTQSKGVI	8	Unmodified	_VTQSKGVI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	831.4934441024001	1	831.493444	830.486168	1.8892	0.0015709	-4.4598	-0.0037083	-2.5705	-0.0021374	831.488780012801	58.389	0.12003	58.389	58.293	58.413	0	438	46	1.359022	0.026832104	1.359022	276.68918	0	5.4628296						105	6	2	NaN	NaN	NaN	0.84512	1	5142	5142		2.4615	0	1	7560.1			29608	4756	17095	17570	23606	23606					0.06414399868754117
VTRGELSVDPP	11	Unmodified	_VTRGELSVDPP_					0	0	0			REV__ENST00000322357.8_1_19:4046144-4046315:-|nuORF	REV__ENST00000322357.8_1_19:4046144-4046315:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3116774501	2	585.311677	1168.6088	0.89982	0.00052668	-9.6644	-0.0056567	-8.7646	-0.00513	585.8091610883423	38.588	0.19225	38.588	38.42	38.612	0	1209	61	0.892844	0.03676611	0.892844	361.83554	0	14.899902						115	9	2	NaN	NaN	NaN	0.76276	1	15447	15447		3.261	0.66155	1	8074.2	+		29609	11725	17096	17571	23607	23607					0.031241918095020083
VTRGELSVDPP	11	Unmodified						0	0	0			REV__ENST00000322357.8_1_19:4046144-4046315:-|nuORF	REV__ENST00000322357.8_1_19:4046144-4046315:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.311677	1168.6088	0.89982	0.00052668	-9.6644	-0.0056567	-8.7646	-0.00513	585.8091610883423	38.588	0.19225	38.588	38.42	38.612	0	1209	61	0.892844	0.03676611	0.892844	361.83554		14.899902	0	0	0	NaN	3.261	115	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8074.2	+		29610	11725	17096	17571							0.031241918095020083
VTRLHSPHFH	10	Unmodified	_VTRLHSPHFH_					0	0	0			REV__nc|ENSG00000133816|O94851-5|MICAL2	REV__nc|ENSG00000133816|O94851-5|MICAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	410.8878677500666	3	410.887868	1229.64177	1.0596	0.00043537	-0.63196	-0.00025967	0.42763	0.00017571	410.887408987107	29.135	0.12068	29.127	29.079	29.2	-0.0077229	1479	34	0.72651637	0.020429373	0.7249969	441.3841	0	12.41156						82	6	2	NaN	NaN	NaN	0.70677	1	16543	16543		3.9087	0	1	8871.4	+		29611	9571	17097	17572	23608	23608					0.03613863442865295
VTSAKEKTS	9	Unmodified	_VTSAKEKTS_					0	0	0			REV__PEAK1|p.R760K|1|0.32|ENSG00000173517|chr15:77179648-77179648|C/T|missense_variant	REV__PEAK1|p.R760K|1|0.32|ENSG00000173517|chr15:77179648-77179648|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	475.76128911154996	2	475.761289	949.508025	0.78341	0.00037272	-1.678	-0.00079833	-0.8946	-0.00042562	475.76032171940795	12.678	0.43204	12.669	12.548	12.98	-0.00947	1368	58	0.7950918	0.035134315	0.79357237	323.08612	0	14.276855						460	19	4	NaN	NaN	NaN	0.33629	1	6949	6949		16.584	1.4088	1	93160	+		29612	13292	17098	17573	23609	23609					0.03125159826663548
VTSALPAL	8	Unmodified	_VTSALPAL_					0	0	0		nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1;nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4610813414998	1	771.461081	770.453805	1.9961	0.0015399	-10.111	-0.0078005	-8.1153	-0.0062606	771.4512487724863	56.013	0.14392	56.013	55.965	56.109	0	546	118	1.294491	0.070098996	1.294491	263.88507	0	14.289856						348	7	4	NaN	NaN	NaN	0.84876	1	4365	4365		0.39566	0	1	101910			29613	803	17099	17574	23610	23610					0.05939612465738264
VTSALPAL	8	Unmodified						0	0	0		nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1;nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	771.461081	770.453805	-0.07136	-5.5052E-05	-9.1242	-0.007039	-9.1955	-0.007094	771.4539666410899	56.011	0.12005	56.01	55.986	56.106	-0.00059128	540	133	1.2980826	0.07909024	1.2965631	264.61722		16.122742	-0.0013578	0.00014186	0.0010361	NaN	0.39566	236	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90427			29614	803	17099	17574							0.05939612465738264
VTSALWLLL	9	Unmodified	_VTSALWLLL_					0	0	0		ENST00000263856.8_1_2:86732371-86732512:-|nuORF	ENST00000263856.8_1_2:86732371-86732512:-|nuORF	ENST00000263856.8_1_2:86732371-86732512:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.3129605413	2	508.312961	1014.61137	1.5028	0.00076389	-7.3303	-0.0037261	-5.8275	-0.0029622	508.309553735534	24.598	0.096478	24.598	24.574	24.671	0	1257	70	0.86339295	0.04235196	0.86339295	350.51895	0	17.19397						133	5	3	NaN	NaN	NaN	0.53206	1	9170	9170		8.2903	0	1	19158			29615	6323	17100	17575	23611	23611					0.10464692005132292
VTSSSGGG	8	Unmodified	_VTSSSGGG_					0	0	0		ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.2944099437002	1	651.29441	650.287133	1.2653	0.00082407	-1.0021	-0.00065265	0.26319	0.00017142	651.2940463513455	20.887	0.096447	20.887	20.838	20.935	0	1158	37	0.92408	0.022028744	0.92408	188.98381	0	4.5050964						68	5	2	NaN	NaN	NaN	0.84945	1	2049	2049		0	0	1	6274.7			29616	3816	17101	17576	23612	23612					-0.051998604299228646
VTTFIWAC	8	Unmodified	_VTTFIWAC_					0	0	0		ENST00000580416.5_1_17:73467944-73485394:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF	ENST00000580416.5_1_17:73467944-73485394:+|nuORF	ENST00000580416.5_1_17:73467944-73485394:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4597011330001	1	940.459701	939.452425	1.6886	0.001588	-9.9923	-0.0093974	-8.3038	-0.0078094	940.4499959300779	22.284	0.12046	22.27	22.246	22.366	-0.013731	1239	61	0.87444305	0.036813855	0.8729236	177.69518	0	7.4809265						124	6	2	NaN	NaN	NaN	0.84692	1	6665	6665		1.4396	0.5137	1	9360.4			29617	7679	17102	17577	23613	23613					-0.01972344894647904
VTTGWTSE	8	Unmodified	_VTTGWTSE_					0	0	0			REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF	REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.4046886746	1	880.404689	879.397412	1.8409	0.0016208	-7.5547	-0.0066512	-5.7138	-0.0050305	880.3976387424892	52.739	0.11982	52.739	52.715	52.835	0	252	43	1.4695803	0.024885178	1.4695803	298.92722	0	5.0618896						79	6	2	NaN	NaN	NaN	0.83211	1	5785	5785		4.9097	0.49665	1	4760.6	+		29618	11519	17103	17578	23614	23614					-0.047110601615713676
VTTGWTSE	8	Unmodified						0	0	0			REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF	REV__ENST00000255078.7_1_11:68707211-68707535:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	880.404689	879.397412	1.8409	0.0016208	-7.5547	-0.0066512	-5.7138	-0.0050305	880.3976387424892	52.739	0.11982	52.739	52.715	52.835	0	252	43	1.4695803	0.024885178	1.4695803	298.92722		5.0618896	-0.010995	-0.00057447	-0.0001289	NaN	4.9097	79	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4760.6	+		29619	11519	17103	17578							-0.047110601615713676
VTVAPAPI	8	Unmodified	_VTVAPAPI_					0	0	0			REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4661667193999	1	767.466167	766.45889	1.44	0.0011052	-4.3805	-0.0033619	-2.9405	-0.0022567	767.4625783156462	29.979	0.21718	29.973	29.925	30.142	-0.0064087	576	124	1.2765218	0.07379627	1.2750024	260.2457	0	15.044907						364	10	4	NaN	NaN	NaN	0.84876	1	4240	4240		0.39566	0	1	111690	+		29620	11449	17104	17579	23615	23615					0.06631916328353782
VTVAPAPI	8	Unmodified						0	0	0			REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.466167	766.45889	2.099	0.0016109	-3.4531	-0.0026502	-1.3541	-0.0010392	767.4635302604198	29.98	0.19312	29.98	29.932	30.125	0	576	97	1.2765218	0.057563186	1.2765218	260.24567		11.735474	0.003666	0.0002171	0.00075972	NaN	0.39566	324	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95871	+		29621	11449	17104	17579							0.06631916328353782
VTVAPAPI	8	Unmodified						0	0	0			REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	REV__ENST00000171111.9_2_19:10610638-10610674:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.466167	766.45889	1.44	0.0011052	-4.3805	-0.0033619	-2.9405	-0.0022567	767.4625783156462	29.979	0.21718	29.973	29.925	30.142	-0.0064087	576	124	1.2765218	0.07379627	1.2750024	260.2457		15.044907	-0.003666	-0.00049465	-0.00075972	NaN	0.39566	364	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111690	+		29622	11449	17104	17579							0.06631916328353782
VTVGGYYP	8	Unmodified	_VTVGGYYP_					0	0	0		nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;ENSG00000184497|ENST00000375353|TMEM255B;nc|ENSG00000125355|Q5JRV8|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	nc|ENSG00000125355|Q5JRV8-4|TMEM255A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4246958351999	1	855.424696	854.417419	1.3709	0.0011727	-2.9637	-0.0025352	-1.5928	-0.0013625	855.4216107432924	22.235	0.0965	22.222	22.173	22.27	-0.013731	477	55	1.3357477	0.032251716	1.3342283	271.82663	0	6.563263						75	5	2	NaN	NaN	NaN	0.82332	1	5317	5317		6.0903	1.1806	1	5106			29623	2451	17105	17580	23616	23616					-0.015612644309612733
VTVSKLIL	8	Unmodified	_VTVSKLIL_					0	0	0			REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.5815308282002	1	872.581531	871.574254	1.7419	0.0015199	-1.0234	-0.00089302	0.71843	0.00062689	872.5822654177979	54.476	0.096207	54.476	54.452	54.548	0	336	37	1.419741	0.021391511	1.419741	288.8293	0	4.3518677						60	5	2	NaN	NaN	NaN	0.84887	1	5691	5691		0.32989	0	1	4063.8	+		29624	11488	17106	17581	23617	23617					0.13333020459390355
VTVSKLIL	8	Unmodified						0	0	0			REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	872.581531	871.574254	1.7419	0.0015199	-1.0234	-0.00089302	0.71843	0.00062689	872.5822654177979	54.476	0.096207	54.476	54.452	54.548	0	336	37	1.419741	0.021391511	1.419741	288.8293		4.3518677	0.0013328	-0.003675	0.00075972	NaN	0.32989	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4063.8	+		29625	11488	17106	17581							0.13333020459390355
VTWFWRMV	8	Unmodified	_VTWFWRMV_					0	0	0			REV__ENST00000557688.1_1_14:75130600-75131628:-|nuORF	REV__ENST00000557688.1_1_14:75130600-75131628:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.78912969175	2	562.78913	1123.56371	1.9896	0.0011197	-9.4055	-0.0052933	-7.4158	-0.0041735	562.7831170340088	15.82	0.23945	15.807	15.735	15.975	-0.012611	1230	49	0.8799654	0.029444695	0.878446	356.78305	0	11.938416						280	11	4	NaN	NaN	NaN	0.82212	1	13400	13400		6.2502	0.55606	1	44707	+		29626	9293	17107	17582	23618	23618					0.006867145332762448
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		ENST00000431088.1_1_2:223591487-223591550:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000431088.1_1_2:223591487-223591550:+|nuORF	ENST00000431088.1_1_2:223591487-223591550:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5506246302998	1	1026.55062	1025.54335	1.8195	0.0018678	-1.4961	-0.0015359	0.32338	0.00033196	1026.5496793992909	27.543	0.12067	27.543	27.519	27.639	0	135	79	1.5387528	0.045995355	1.5387528	312.30975	0	9.335358						167	6	3	NaN	NaN	NaN	0.12328	1	9602	9602		32.453	2.8544	1	13332			29627	773	17108	17583	23619	23619					0.031598223544506254
VTYWGPVDI	9	Unmodified	_VTYWGPVDI_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2687500029001	2	525.26875	1048.52295	1.3792	0.00072444	-7.935	-0.004168	-6.5559	-0.0034436	525.2656533114705	19.394	0.16829	19.38	19.332	19.5	-0.014141	1311	67	0.83019954	0.040591657	0.8286801	336.89722	0	16.472198						342	8	4	NaN	NaN	NaN	0.12945	1	10348	10348		31.561	2.6655	1	49177			29628	1873	17109	17584	23620	23620					0.0006265169467951637
VVAAAAAAA	9	Unmodified	_VVAAAAAAA_					0	0	0		ENST00000262288.7_1_17:55055489-55058452:+|nuORF;ENST00000450536.6_1_6:139308860-139309238:-|nuORF;ENST00000563328.4_1_16:72822270-72822732:+|nuORF;ENST00000482119.5_1_2:121554896-121709026:+|nuORF;ENSG00000164105|ENST00000296504|SAP30;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF;nc|ENSG00000196504|O75400-2|PRPF40A;REV__nc|ENSG00000183955|Q9NQR1|KMT5A	nc|ENSG00000196504|O75400-2|PRPF40A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.7108709832499	2	357.710871	713.407189	2.326	0.00083203	-9.0923	-0.0032524	-6.7663	-0.0024204	357.70760478646787	53.218	0.024006	53.218	53.218	53.242	0	1437	28	0.7524962	0.016689539	0.7524962	307.21698	0	6.813751						28	2	2	NaN	NaN	NaN	0.6907	1	3484	3484		0	0	1	1341.9			29629	5632;11833;13193	17110	17585	23621	23621					0.03902172634445833
VVAAFIIL	8	Unmodified	_VVAAFIIL_					0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	845.5495024183002	1	845.549502	844.542226	1.5777	0.001334	-0.13718	-0.00011599	1.4405	0.001218	845.549242814984	36.471	0.072403	36.471	36.446	36.519	0	366	43	1.4019053	0.024980664	1.4019053	285.34262	0	5.0845337						62	4	2	NaN	NaN	NaN	0.77734	1	5326	5326		12.26	0	1	3730.9	+		29630	8854	17111	17586	23622	23622					0.11373652776239851
VVAAFIIL	8	Unmodified						0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	845.549502	844.542226	1.5777	0.001334	-0.13718	-0.00011599	1.4405	0.001218	845.549242814984	36.471	0.072403	36.471	36.446	36.519	0	366	43	1.4019053	0.024980664	1.4019053	285.34262		5.0845337	0.00012645	-0.00056922	-0.0010246	NaN	12.26	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3730.9	+		29631	8854	17111	17586							0.11373652776239851
VVACAAGL	8	Unmodified	_VVACAAGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.3807225305001	1	703.380723	702.373446	1.5445	0.0010864	0.33303	0.00023425	1.8776	0.0013206	703.381465045737	23.224	0.19291	23.224	23.2	23.393	0	609	76	1.2567334	0.045021653	1.2567334	256.6221	0	9.193329						220	9	3	NaN	NaN	NaN	0.77734	1	3255	3255		12.26	0	1	26884			29632	1675	17112	17587	23623	23623					0.010354278710678955
VVADILGV	8	Unmodified	_VVADILGV_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	785.4767314057002	1	785.476731	784.469455	0.061036	4.7943E-05	1.1481	0.00090185	1.2092	0.00094979	785.4793887375178	55.626	0.14413	55.626	55.554	55.698	-0.00059128	366	55	1.4019053	0.032128215	1.4003859	285.6923	0	6.5473633						100	7	2	NaN	NaN	NaN	0.84692	1	4474	4474		1.4396	0	1	6410.6			29633	13860	17113	17588	23624	23624					0.06859898982816048
VVADLNGL	8	Unmodified	_VVADLNGL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	800.4512449367002	1	800.451245	799.443968	0.19844	0.00015884	3.4535	0.0027643	3.6519	0.0029232	800.4547112510649	56.947	0.095985	56.946	56.946	57.042	-0.00056458	381	43	1.3929803	0.02499926	1.3914609	283.782	0	5.092926						87	5	2	NaN	NaN	NaN	0.84692	1	4653	4653		1.4396	0	1	5051.9			29634	3151	17114	17589	23625	23625					0.03622424460388629
VVAGEATWTT	10	Unmodified	_VVAGEATWTT_					0	0	0			REV__ENST00000533912.1_1_6:131191025-131199321:-|nuORF	REV__ENST00000533912.1_1_6:131191025-131199321:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.76128911155	2	517.761289	1033.50803	1.8369	0.00095105	-6.1018	-0.0031593	-4.2649	-0.0022082	517.7577452228977	15.606	0.09607	15.606	15.582	15.678	0	1344	37	0.8098828	0.022176862	0.8098828	328.7145	0	9.001129						80	5	2	NaN	NaN	NaN	0.75966	1	9918	9918		3.9685	0	1	5933.4	+		29635	12663	17115	17590	23626	23626					-0.007388401733351202
VVAGGSGG	8	Unmodified	_VVAGGSGG_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3096660774002	1	603.309666	602.30239	0.82854	0.00049987	1.7604	0.0010621	2.5889	0.0015619	603.3101935301186	32.973	0.1207	32.973	32.949	33.069	0	825	40	1.1266327	0.023582458	1.1266327	230.78543	0	4.8307343						94	6	2	NaN	NaN	NaN	0.84945	1	660	660		0	0	1	6019.6			29636	4564	17116	17591	23627	23627					-0.01466948842085003
VVAHGGAA	8	Unmodified	_VVAHGGAA_					0	0	0		ENST00000268489.9_1_16:72994068-73081865:-|nuORF	ENST00000268489.9_1_16:72994068-73081865:-|nuORF	ENST00000268489.9_1_16:72994068-73081865:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.3678496583	1	681.36785	680.360573	1.7189	0.0011712	-4.3103	-0.0029369	-2.5914	-0.0017657	681.3669988240632	54.092	0.095921	54.092	54.068	54.164	0	696	73	1.2044523	0.043329716	1.2044523	246.09854	0	8.853287						165	5	4	NaN	NaN	NaN	0.84876	1	2854	2854		0.39566	0	1	11356			29637	6335	17117	17592	23628	23628					0.007607328031781435
VVAHRLST	8	Unmodified	_VVAHRLST_					0	0	0		ENST00000487380.5_1_2:220074662-220075642:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000115657|ENST00000265316|ABCB6;ENSG00000004846|ENST00000404938|ABCB5	ENST00000487380.5_1_2:220074662-220075642:-|nuORF	ENST00000487380.5_1_2:220074662-220075642:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.76142649729996	2	441.761426	881.5083	1.1969	0.00052876	-7.1826	-0.003173	-5.9856	-0.0026442	441.75849060949514	56.565	0.071842	56.565	56.565	56.637	0	1317	31	0.8265074	0.018462718	0.8265074	336.2213	0	7.5105896						63	4	2	NaN	NaN	NaN	0.82332	1	5823	5823		6.0903	0	1	8115.3			29638	311	17118	17593	23629	23629					0.06280624337171048
VVAKAKLV	8	Unmodified	_VVAKAKLV_					0	0	0			REV__ENSG00000170577|ENST00000303077|SIX2	REV__ENSG00000170577|ENST00000303077|SIX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	827.5713004929	1	827.5713	826.564024	2.0825	0.0017235	-9.5041	-0.0078653	-7.4215	-0.0061419	827.5662384795961	55.701	0.072319	55.701	55.677	55.749	0	327	37	1.425088	0.021384716	1.425088	290.16226	0	4.3541565						72	4	3	NaN	NaN	NaN	0.84887	1	5106	5106		0.32989	0	1	3464.7	+		29639	10593	17119	17594	23630	23630					0.1438045752479411
VVAKASKA	8	Unmodified	_VVAKASKA_					0	0	0		ENST00000424528.2_1_1:98454955-98511575:-|nuORF	ENST00000424528.2_1_1:98454955-98511575:-|nuORF	ENST00000424528.2_1_1:98454955-98511575:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.487964794	1	773.487965	772.480688	-0.054178	-4.1906E-05	6.8263	0.0052801	6.7721	0.0052382	773.4932963249641	55.578	0.12019	55.578	55.482	55.602	-0.00059128	444	58	1.3554435	0.034005404	1.353924	276.29758	0	6.9317627						101	6	2	NaN	NaN	NaN	0.84455	1	4317	4317		2.7852	0	1	8336.2			29640	6935	17120	17595	23631	23631					0.08534721076944152
VVAKASKA	8	Unmodified						0	0	0		ENST00000424528.2_1_1:98454955-98511575:-|nuORF	ENST00000424528.2_1_1:98454955-98511575:-|nuORF	ENST00000424528.2_1_1:98454955-98511575:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	773.487965	772.480688	1.909	0.0014766	5.5179	0.004268	7.4269	0.0057446	773.4926675311665	55.725	0.2886	55.725	55.653	55.941	0	444	91	1.3554435	0.053678393	1.3554435	276.29758		10.941956	0.073522	-0.00013532	0.00075972	NaN	2.7852	308	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55810			29641	6935	17120	17595							0.08534721076944152
VVALTPAP	8	Unmodified	_VVALTPAP_					0	0	0		ENST00000532887.5_1_8:145582591-145582844:+|nuORF	ENST00000532887.5_1_8:145582591-145582844:+|nuORF	ENST00000532887.5_1_8:145582591-145582844:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4661667194	1	767.466167	766.45889	-0.092602	-7.1069E-05	-1.255	-0.0009632	-1.3476	-0.0010343	767.464439825899	55.29	0.048023	55.29	55.266	55.314	-0.00061798	576	49	1.2765218	0.028766274	1.2750024	260.24567	0	5.8645935						74	3	2	NaN	NaN	NaN	0.84887	1	4241	4241		0.32989	0	1	9276.2			29642	7456	17121	17596	23632	23632					0.0663191632836515
VVALTPAP	8	Unmodified						0	0	0		ENST00000532887.5_1_8:145582591-145582844:+|nuORF	ENST00000532887.5_1_8:145582591-145582844:+|nuORF	ENST00000532887.5_1_8:145582591-145582844:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.466167	766.45889	1.7416	0.0013366	-3.6006	-0.0027633	-1.859	-0.0014267	767.4643512223951	55.292	0.047993	55.292	55.268	55.316	0	582	49	1.2729256	0.028772473	1.2729256	259.51254		5.8658752	0.0013898	-0.0012404	-0.0010384	NaN	0.32989	72	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9388.5			29643	7456	17121	17596							0.0663191632836515
VVAMAGGS	8	Unmodified	_VVAMAGGS_					0	0	0			REV__nc|ENSG00000100324|Q15750-2|TAB1	REV__nc|ENSG00000100324|Q15750-2|TAB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3443370242002	1	691.344337	690.337061	0.94604	0.00065404	5.3484	0.0036976	6.2944	0.0043516	691.348525938028	31.21	0.19305	31.205	31.109	31.302	-0.0050716	714	109	1.1936152	0.065084934	1.1920958	243.81473	0	13.294647						330	9	3	NaN	NaN	NaN	0.83849	1	2974	2974		4.0537	0	1	53279	+		29644	8806	17122	17597	23633	23633					-0.020494490256396602
VVAMAGGS	8	Unmodified						0	0	0			REV__nc|ENSG00000100324|Q15750-2|TAB1	REV__nc|ENSG00000100324|Q15750-2|TAB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	691.344337	690.337061	0.94604	0.00065404	5.3484	0.0036976	6.2944	0.0043516	691.348525938028	31.21	0.19305	31.205	31.109	31.302	-0.0050716	714	109	1.1936152	0.065084934	1.1920958	243.81473		13.294647	-0.003073	-0.00055384	0.00014371	NaN	4.0537	330	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53279	+		29645	8806	17122	17597							-0.020494490256396602
VVANAKGA	8	Unmodified	_VVANAKGA_					0	0	0		ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENST00000417868.1_1_1:153825491-153825668:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	729.4253645372	1	729.425365	728.418088	-0.29641	-0.00021621	-0.68033	-0.00049625	-0.97674	-0.00071246	729.4251720754669	56.875	0.16812	56.874	56.754	56.922	-0.00056458	483	52	1.3321642	0.03046155	1.3306447	271.83884	0	6.215912						128	8	2	NaN	NaN	NaN	0.84876	1	3666	3666		0.39566	0	1	9608.6			29646	6893	17123	17598	23634	23634					0.04301575008753389
VVANAKGA	8	Unmodified						0	0	0		ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENST00000417868.1_1_1:153825491-153825668:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	729.425365	728.418088	1.4886	0.0010858	-2.0755	-0.0015139	-0.58688	-0.00042809	729.4238273970391	56.828	0.14416	56.828	56.756	56.9	0	480	67	1.3339561	0.039431334	1.3339561	272.20447		8.046265	-0.02286	-0.00073841	0.0016556	NaN	0.39566	123	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7974.7			29647	6893	17123	17598							0.04301575008753389
VVAPSIIA	8	Unmodified	_VVAPSIIA_					0	0	0		nc|ENSG00000205423|Q8N9A8-2|CNEP1R1;ENSG00000205423|ENST00000427478|CNEP1R1;ENST00000566482.5_1_16:50060318-50068094:+|nuORF	nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.4818167836002	1	769.481817	768.47454	-0.014266	-1.0977E-05	8.134	0.006259	8.1198	0.006248	769.4887956508253	58.602	0.048084	58.602	58.578	58.626	-0.00045776	393	61	1.3858368	0.03571713	1.3843174	282.51877	0	7.2813416						85	3	3	NaN	NaN	NaN	0.84727	1	4267	4267		1.2418	0	1	7465.2			29648	5927	17124	17599	23635	23635					0.08104202845436248
VVATARGI	8	Unmodified	_VVATARGI_					0	0	0		ENSG00000104067|ENST00000614355|TJP1;nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1	ENSG00000104067|ENST00000614355|TJP1	ENSG00000104067|ENST00000614355|TJP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	786.4832137671002	1	786.483214	785.475937	2.0006	0.0015734	1.9347	0.0015216	3.9353	0.003095	786.4821931566102	55.893	0.048031	55.893	55.869	55.917	0	390	55	1.3876231	0.032148838	1.3876231	282.7755	0	6.5513916						73	3	2	NaN	NaN	NaN	0.84876	1	4574	4574		0.39566	0	1	3816.9			29649	1461	17125	17600	23636	23636					0.07461836934191979
VVCVAAGG	8	Unmodified	_VVCVAAGG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3494224021001	1	675.349422	674.342146	1.2726	0.00085944	4.9199	0.0033227	6.1925	0.0041821	675.3528826623212	24.092	0.24133	24.092	23.995	24.237	0	756	148	1.1683017	0.08862126	1.1683017	238.75407	0	18.110626						529	11	2	NaN	NaN	NaN	0.83849	1	2713	2713		4.0537	0	1	66422			29650	3145	17126	17601	23637	23637					-0.008051451630194606
VVCVAAGG	8	Unmodified	_VVCVAAGG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021001	1	675.349422	674.342146	1.3017	0.00087913	3.8828	0.0026222	5.1845	0.0035014	675.3519359248116	23.199	0.1448	23.186	23.114	23.258	-0.013294	765	115	1.1628724	0.06875241	1.161353	237.64455	0	14.050232						310	7	2	NaN	NaN	NaN	0.84651	1	2624	2624		1.6704	0	1	21962			29651	3145	17126	17601	23638	23638					-0.008051451630194606
VVCVAAGG	8	Unmodified	_VVCVAAGG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	675.3494224021001	1	675.349422	674.342146	0.78908	0.00053291	4.909	0.0033153	5.6981	0.0038482	675.3526108227102	26.963	0.19308	26.952	26.88	27.073	-0.010645	780	106	1.1538198	0.0633415	1.1523004	235.79454	0	12.944473						374	9	2	NaN	NaN	NaN	0.83849	1	2626	2626		4.0537	0	1	44427			29652	3145	17126	17601	23639	23639					-0.008051451630194606
VVCVAAGG	8	Unmodified						0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.6839	0.0011372	2.0366	0.0013754	3.7205	0.0025127	675.3506497031974	23.2	0.048225	23.2	23.2	23.248	0	768	94	1.1610622	0.056096554	1.1610622	237.27464		11.463882	0.006929	-0.00074426	-0.00014535	NaN	1.6704	106	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8128.9			29653	3145	17126	17601							-0.008051451630194606
VVCVAAGG	8	Unmodified						0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	675.349422	674.342146	1.0867	0.00073392	4.945	0.0033396	6.0318	0.0040735	675.3529301267315	26.915	0.24131	26.915	26.867	27.109	0	783	106	1.1520087	0.06334841	1.1520087	235.42442		12.945862	-0.018407	1.2623E-05	-0.00014584	NaN	4.0537	360	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41762			29654	3145	17126	17601							-0.008051451630194606
VVCVAAGG	8	Unmodified						0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	675.349422	674.342146	1.2022	0.00081189	5.0561	0.0034146	6.2582	0.0042265	675.3526685360713	24.092	0.2895	24.079	23.958	24.248	-0.012749	756	142	1.1683017	0.08500409	1.1667823	238.75407		17.371414	-0.0064666	4.1049E-05	-0.00075972	NaN	4.0537	727	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81423			29655	3145	17126	17601							-0.008051451630194606
VVDAIPVFL	9	Unmodified	_VVDAIPVFL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.5764454503002	1	972.576445	971.569169	1.8259	0.0017758	0.11808	0.00011484	1.944	0.0018907	972.5764665719554	34.638	0.12059	34.638	34.614	34.734	0	213	73	1.4926696	0.042606115	1.4926696	303.17978	0	8.653839						163	6	2	NaN	NaN	NaN	0.094712	1	7663	7663		36.586	13.252	1	27796			29656	3818	17127	17602	23640	23640					0.08224716596760118
VVDAIPVFL	9	Unmodified	_VVDAIPVFL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	972.5764454503002	1	972.576445	971.569169	1.2947	0.0012592	0.88386	0.00085962	2.1786	0.0021188	972.5771823904722	34.636	0.12057	34.636	34.587	34.708	-0.0006485	213	58	1.4926696	0.03372085	1.4911501	303.17978	0	6.849121						156	6	2	NaN	NaN	NaN	0.14301	1	7514	7514		29.598	10.48	1	27773			29657	3818	17127	17602	23641	23641					0.08224716596760118
VVDDTGAY	8	Unmodified	_VVDDTGAY_					0	0	0			REV__nc|ENSG00000109184|Q92564-2|DCUN1D4	REV__nc|ENSG00000109184|Q92564-2|DCUN1D4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.19270801985	2	420.192708	838.370863	0.67061	0.00028179	-3.3488	-0.0014072	-2.6782	-0.0011254	420.19107922919557	35.191	0.16895	35.191	35.119	35.287	-4.5776E-05	1404	58	0.77288127	0.035206795	0.7713618	314.6542	0	14.333313						252	8	2	NaN	NaN	NaN	0.8439	1	5115	5115		3.1533	0.69183	1	28070	+		29658	9055	17128	17603	23642	23642					-0.05478749052895182
VVDEGNHV	8	Unmodified	_VVDEGNHV_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.4159220629001	1	868.415922	867.408646	1.933	0.0016787	-4.8961	-0.0042518	-2.9631	-0.0025732	868.4114537445824	24.96	0.28956	24.96	24.888	25.178	0	435	130	1.360811	0.07694328	1.360811	276.86136	0	15.654327						575	13	4	NaN	NaN	NaN	0.73961	1	5628	5628		16.584	0.16752	1	141820	+		29659	10861	17129	17604	23643	23643					-0.03036238067420527
VVDEGNHV	8	Unmodified	_VVDEGNHV_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.4159220629001	1	868.415922	867.408646	1.4859	0.0012904	-4.2425	-0.0036842	-2.7566	-0.0023939	868.4123993016686	24.96	0.24127	24.948	24.875	25.117	-0.012394	435	115	1.360811	0.0679636	1.3592916	276.86136	0	13.827423						575	11	4	NaN	NaN	NaN	0.65542	1	5485	5485		21.835	5.4184	1	136470	+		29660	10861	17129	17604	23644	23644					-0.03036238067420527
VVDEGNHV	8	Unmodified						0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	868.415922	867.408646	1.933	0.0016787	-4.8961	-0.0042518	-2.9631	-0.0025732	868.4114537445824	24.96	0.28956	24.96	24.888	25.178	0	435	130	1.360811	0.07694328	1.360811	276.86136		15.654327	0.0063002	-0.00036443	0.00075972	NaN	21.835	575	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141820	+		29661	10861	17129	17604							-0.03036238067420527
VVDEGNHV	8	Unmodified						0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	868.415922	867.408646	1.4859	0.0012904	-4.2425	-0.0036842	-2.7566	-0.0023939	868.4123993016686	24.96	0.24127	24.948	24.875	25.117	-0.012394	435	115	1.360811	0.0679636	1.3592916	276.86136		13.827423	-0.0063002	0.00020317	-0.00075972	NaN	21.835	575	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136470	+		29662	10861	17129	17604							-0.03036238067420527
VVDFMTLLA	9	Unmodified	_VVDFMTLLA_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.7753536145001	2	504.775354	1007.53615	1.7337	0.00087511	-8.7013	-0.0043922	-6.9676	-0.0035171	504.77082900339104	22.549	0.14465	22.549	22.477	22.621	0	1281	52	0.84864825	0.031354427	0.84864825	344.5653	0	12.730408						104	7	3	NaN	NaN	NaN	0.47587	1	8886	8886		10.605	2.3147	1	8275.2			29663	3829	17130	17605	23645	23645					0.03268766482415231
VVDGFNAK	8	Unmodified	_VVDGFNAK_					0	0	0			REV__ENST00000565339.5_1_16:67848301-67859829:+|nuORF	REV__ENST00000565339.5_1_16:67848301-67859829:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.22688518819996	2	425.226885	848.439217	1.1563	0.00049171	-8.2207	-0.0034957	-7.0644	-0.003004	425.22356014607254	44.352	0.1678	44.352	44.304	44.472	0	1443	34	0.7487872	0.020400584	0.7487872	304.78687	0	8.303864						91	8	2	NaN	NaN	NaN	0.81251	1	5364	5364		7.5404	3.5719	1	6428.4	+		29664	8897	17131	17606	23646	23646					0.008935403176110412
VVDPNDPQM	9	Unmodified	_VVDPNDPQM_					0	0	0		ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1014.4560723181	1	1014.45607	1013.4488	2.5112	0.0025475	-2.1161	-0.0021467	0.39504	0.00040075	1014.4530136042283	18.074	0.096014	18.06	18.012	18.108	-0.013786	276	52	1.4553556	0.030245066	1.4538362	295.43	0	6.139618						94	5	2	NaN	NaN	NaN	0.13196	1	8930	8930		31.198	4.4665	1	7484.4			29665	3757	17132	17607	23647	23647					-0.05739059459165219
VVDPNDPQM	9	Unmodified						0	0	0		ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1014.45607	1013.4488	2.5575	0.0025945	-1.8621	-0.001889	0.69542	0.00070548	1014.4542942006664	18.029	0.11991	18.029	18.005	18.125	0	282	40	1.4517976	0.023128629	1.4517976	294.7077		4.6950073	-0.015586	9.5563E-05	-0.0010193	NaN	31.198	81	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4859.6			29666	3757	17132	17607							-0.05739059459165219
VVDPNDPQM	9	Oxidation (M)	_VVDPNDPQM(Oxidation (M))_		VVDPNDPQM(1)		VVDPNDPQM(53)	0	0	1		ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	ENSG00000151883|ENST00000281631|PARP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7291317034001	2	515.729132	1029.44371	1.0741	0.00055393	1.979	0.0010206	3.053	0.0015745	515.7308796030189	14.548	0.1677	14.537	14.489	14.657	-0.011218	1332	76	0.8172735	0.046174347	0.81575406	331.7314	0	18.742188						241	8	3	NaN	NaN	NaN	0.03618	1	9542	9542		52.78	30.653	1	38304			29667	3757	17132	17608	23648	23648		414			-0.0698336332177405
VVELIPGG	8	Unmodified	_VVELIPGG_					0	0	0		nc|ENSG00000126107|Q5T447-2|HECTD3;ENSG00000126107|ENST00000372172|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	nc|ENSG00000126107|Q5T447-2|HECTD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.23417890405005	2	392.234179	782.453805	1.3035	0.00051128	-9.6377	-0.0037803	-8.3342	-0.003269	392.23037184185245	39.861	0.38556	39.867	39.722	40.108	0.0060463	1407	88	0.77102906	0.05371332	0.7695096	314.26086	0	21.892822						865	17	3	NaN	NaN	NaN	0.84207	1	4446	4446		3.5732	0	1	124000			29668	2494	17133	17609	23649	23649					0.05387612465767688
VVFLFEKH	8	Unmodified	_VVFLFEKH_					0	0	0		SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5720287744001	1	1018.57203	1017.56475	2.3307	0.002374	6.049	0.0061614	8.3797	0.0085353	1018.5780851605781	36.615	0.048195	36.615	36.591	36.639	0	138	46	1.5369828	0.026551247	1.5369828	311.9829	0	5.3894653						65	3	2	NaN	NaN	NaN	0.83211	1	9284	9284		4.9097	0.49665	1	4005.6			29669	13677	17134	17610	23650	23650					0.056672521738505566
VVGASSVG	8	Unmodified	_VVGASSVG_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant;nc|ENSG00000089101|Q8NHU2-5|CFAP61;nc|ENSG00000089101|Q8NHU2-6|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.3671809563002	1	675.367181	674.359904	0.56603	0.00038228	1.7423	0.0011767	2.3084	0.001559	675.368066807246	35.265	0.096539	35.265	35.217	35.313	0	744	46	1.1755381	0.027143478	1.1755381	240.23277	0	5.5470276						40	5	2	NaN	NaN	NaN	0.84945	1	2717	2717		0	0	1	2756.7			29670	100	17135	17611	23651	23651					0.009698933634922469
VVGDSYGF	8	Unmodified	_VVGDSYGF_					0	0	0			REV__ENST00000544208.1_1_9:37522456-37525129:-|nuORF	REV__ENST00000544208.1_1_9:37522456-37525129:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.19779339775005	2	422.197793	842.381034	0.95157	0.00040175	-0.69536	-0.00029358	0.25622	0.00010817	422.19772530953634	30.922	0.072348	30.922	30.873	30.946	0	1389	31	0.7821392	0.018510759	0.7821392	318.39886	0	7.5355225						42	4	2	NaN	NaN	NaN	0.84876	1	5293	5293		0.39566	0	1	4108.4	+		29671	9970	17136	17612	23652	23652					-0.046461413276574604
VVGEAGVI	8	Unmodified	_VVGEAGVI_					0	0	0			REV__ENSG00000111361|ENST00000424014|EIF2B1	REV__ENSG00000111361|ENST00000424014|EIF2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	372.2185288398501	2	372.218529	742.422505	2.1072	0.00078433	0.43147	0.0001606	2.5386	0.00094493	372.2185442523701	18.748	0.071928	18.748	18.724	18.796	0	1407	40	0.77102906	0.024080992	0.77102906	314.552	0	9.824158						66	4	2	NaN	NaN	NaN	0.84887	1	3957	3957		0.32989	0	1	5274.7	+		29672	9095	17137	17613	23653	23653					0.04099039431685014
VVGGKAGC	8	Unmodified	_VVGGKAGC_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.4771	0.0010197	2.4227	0.0016725	3.8997	0.0026922	690.363211483897	29.425	0.16899	29.425	29.353	29.522	0	759	49	1.1664921	0.028951406	1.1664921	238.28104	0	5.9139557						148	8	2	NaN	NaN	NaN	0.84887	1	3008	3008		0.32989	0	1	10464			29673	6188	17138	17614	23654	23654					-0.004057427887460108
VVGGKAGC	8	Unmodified	_VVGGKAGC_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.5531	0.0010722	3.2032	0.0022113	4.7562	0.0032835	690.3622914412492	35.964	0.28933	35.964	35.892	36.181	0	753	85	1.1701111	0.050643325	1.1701111	239.02028	0	10.345001						380	13	2	NaN	NaN	NaN	0.84887	1	3014	3014		0.32989	0	1	55454			29674	6188	17138	17614	23655	23655					-0.004057427887460108
VVGGKAGC	8	Unmodified	_VVGGKAGC_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	690.3603214394001	1	690.360321	689.353045	1.9887	0.0013729	3.2594	0.0022501	5.2481	0.0036231	690.3629612042679	30.101	0.14485	30.101	30.004	30.149	0	732	85	1.1827712	0.05064881	1.1827712	241.60638	0	10.346115						194	7	2	NaN	NaN	NaN	0.84887	1	3020	3020		0.32989	0	1	17415			29675	6188	17138	17614	23656	23656					-0.004057427887460108
VVGGKAGC	8	Unmodified	_VVGGKAGC_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	0.97163	0.00067077	4.4336	0.0030608	5.4052	0.0037315	690.3636235439116	33.985	0.19309	33.984	33.936	34.129	-0.0012474	753	79	1.1701111	0.04705119	1.1685916	239.02028	0	9.611206						281	9	2	NaN	NaN	NaN	0.84887	1	2942	2942		0.32989	0	1	76584			29676	6188	17138	17614	23657	23657					-0.004057427887460108
VVGGKAGC	8	Unmodified	_VVGGKAGC_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	690.3603214394001	1	690.360321	689.353045	1.1197	0.00077297	4.3484	0.003002	5.4681	0.003775	690.3636513440508	30.559	0.26537	30.553	30.505	30.77	-0.0057564	732	106	1.1827712	0.06328046	1.1812518	241.60638	0	12.926392						550	12	3	NaN	NaN	NaN	0.84887	1	2945	2945		0.32989	0	1	92948			29677	6188	17138	17614	23658	23658					-0.004057427887460108
VVGGLAGI	8	Unmodified	_VVGGLAGI_					0	0	0		ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.4243019047002	1	685.424302	684.417025	1.6084	0.0011024	6.4187	0.0043995	8.0271	0.005502	685.428717501854	32.345	0.16894	32.345	32.297	32.466	0	633	91	1.2423272	0.05407524	1.2423272	253.80759	0	11.047577						279	8	3	NaN	NaN	NaN	0.84651	1	2935	2935		1.6704	0	1	42014			29678	1851	17139	17615	23659	23659					0.0621936063986368
VVGGNKAA	8	Unmodified	_VVGGNKAA_					0	0	0			REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.409714473	1	715.409714	714.402438	-0.56443	-0.0004038	-3.3599	-0.0024037	-3.9243	-0.0028075	715.4085498562632	53.36	0.11998	53.36	53.288	53.408	-0.00053787	618	88	1.2513325	0.052197337	1.2498131	255.43697	0	10.655121						176	6	3	NaN	NaN	NaN	0.84692	1	3437	3437		1.4396	0	1	13568	+		29679	13626	17140	17616	23660	23660					0.03381288491709711
VVGGNKAA	8	Unmodified						0	0	0			REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	715.409714	714.402438	1.3566	0.00097055	-2.2794	-0.0016307	-0.92275	-0.00066014	715.4082477130656	53.338	0.12004	53.338	53.29	53.41	0	618	82	1.2513325	0.048597455	1.2513325	255.43697		9.920319	-0.010883	0.00030372	0.00075972	NaN	1.4396	246	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19099	+		29680	13626	17140	17616							0.03381288491709711
VVGGNKAA	8	Unmodified						0	0	0			REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	REV__tr|U7T6A2|U7T6A2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00182PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	715.409714	714.402438	-0.56443	-0.0004038	-3.3599	-0.0024037	-3.9243	-0.0028075	715.4085498562632	53.36	0.11998	53.36	53.288	53.408	-0.00053787	618	88	1.2513325	0.052197337	1.2498131	255.43697		10.655121	0.010883	-0.00046926	-0.00075972	NaN	1.4396	176	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13568	+		29681	13626	17140	17616							0.03381288491709711
VVGLAFVL	8	Unmodified	_VVGLAFVL_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	817.5182022899002	1	817.518202	816.510926	2.0868	0.001706	0.39454	0.00032254	2.4814	0.0020286	817.5183444298791	34.686	0.193	34.686	34.638	34.831	0	426	88	1.3661768	0.051875353	1.3661768	278.2233	0	10.564453						354	9	4	NaN	NaN	NaN	0.30174	1	4975	4975		41.978	0	1	86332			29682	2863	17141	17617	23661	23661					0.09533079742141126
VVGLAFVL	8	Unmodified						0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	817.518202	816.510926	1.5515	0.0012684	0.24119	0.00019717	1.7927	0.0014656	817.5183452011566	34.66	0.19279	34.66	34.612	34.804	-0.00064468	423	127	1.3679651	0.07515788	1.3664457	278.58746		15.305969	-0.013092	-5.4032E-05	0.0001344	NaN	41.978	360	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89548			29683	2863	17141	17617							0.09533079742141126
VVGSGGGG	8	Unmodified	_VVGSGGGG_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.2940160132001	1	589.294016	588.28674	1.9753	0.001164	2.8495	0.0016792	4.8248	0.0028432	589.2955355328071	17.165	0.048029	17.165	17.117	17.165	0	1215	28	0.8891654	0.016556382	0.8891654	182.23746	0	3.3932953						38	3	2	NaN	NaN	NaN	0.84945	1	555	555		0	0	1	3202	+		29684	10025	17142	17618	23662	23662					-0.02387235359128681
VVGSSTIG	8	Unmodified	_VVGSSTIG_					0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	719.3933957068002	1	719.393396	718.386119	0.73603	0.0005295	3.0305	0.0021801	3.7665	0.0027096	719.3960865277005	35.627	0.12053	35.627	35.578	35.699	0	1260	34	0.8615505	0.02026838	0.8615505	175.85164	0	4.1369934						80	6	2	NaN	NaN	NaN	0.84945	1	3566	3566		0	0	1	5872.1	+		29685	9458	17143	17619	23663	23663					0.01566162534970772
VVGSSTIG	8	Unmodified	_VVGSSTIG_					0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3933957068002	1	719.393396	718.386119	0.97646	0.00070246	4.0834	0.0029376	5.0598	0.00364	719.3968790630178	35.601	0.09647	35.602	35.577	35.674	0.00053024	1260	31	0.8615505	0.018424809	0.8600311	175.85164	0	3.7607117						63	5	2	NaN	NaN	NaN	0.84945	1	3499	3499		0	0	1	5053.7	+		29686	9458	17143	17619	23664	23664					0.01566162534970772
VVGSSTIG	8	Unmodified						0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	719.393396	718.386119	0.73603	0.0005295	3.0305	0.0021801	3.7665	0.0027096	719.3960865277005	35.627	0.12053	35.627	35.578	35.699	0	1260	34	0.8615505	0.02026838	0.8615505	175.85164		4.1369934	0.012551	-0.00033854	0.00075972	NaN	0	80	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5872.1	+		29687	9458	17143	17619							0.01566162534970772
VVGSSTIG	8	Unmodified						0	0	0			REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	REV__VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	719.393396	718.386119	0.97646	0.00070246	4.0834	0.0029376	5.0598	0.00364	719.3968790630178	35.601	0.09647	35.602	35.577	35.674	0.00053024	1260	31	0.8615505	0.018424809	0.8600311	175.85164		3.7607117	-0.012551	0.00041893	-0.00075972	NaN	0	63	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5053.7	+		29688	9458	17143	17619							0.01566162534970772
VVGVSGSG	8	Unmodified	_VVGVSGSG_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.3515308921002	1	661.351531	660.344254	1.569	0.0010377	4.6719	0.0030897	6.2409	0.0041274	661.3544192643503	55.917	0.072067	55.917	55.893	55.965	0	753	58	1.1701111	0.03437066	1.1701111	239.2246	0	7.026947						90	4	2	NaN	NaN	NaN	0.84945	1	2307	2307		0	0	1	14256			29689	4016	17144	17620	23665	23665					0.0004960684644856883
VVGVSGSG	8	Unmodified	_VVGVSGSG_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.3515308921002	1	661.351531	660.344254	1.6108	0.0010653	5.2889	0.0034979	6.8997	0.0045631	661.3544622962637	55.677	0.072319	55.677	55.677	55.749	0	741	49	1.1773466	0.02893281	1.1773466	240.70387	0	5.915207						69	4	2	NaN	NaN	NaN	0.84945	1	2308	2308		0	0	1	6223.3			29690	4016	17144	17620	23666	23666					0.0004960684644856883
VVGVSGSG	8	Unmodified						0	0	0		ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	661.351531	660.344254	-0.13595	-8.9908E-05	9.4854	0.0062732	9.3495	0.0061833	661.3569843856528	55.915	0.14412	55.914	55.89	56.034	-0.00059128	744	73	1.1755381	0.043399334	1.1740186	240.33409		8.872803	-0.0014249	0.0014193	0.0019538	NaN	0	161	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17558			29691	4016	17144	17620							0.0004960684644856883
VVIALAQA	8	Unmodified	_VVIALAQA_					0	0	0		RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant;nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7;nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant	RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	784.4927158208999	1	784.492716	783.485439	1.511	0.0011854	-3.5038	-0.0027487	-1.9928	-0.0015633	784.4895589573673	29.979	0.19304	29.973	29.925	30.118	-0.0064087	540	112	1.2980826	0.066489935	1.2965631	264.54016	0	13.550186						399	9	4	NaN	NaN	NaN	0.84887	1	4457	4457		0.32989	0	1	144190			29692	1169	17145	17621	23667	23667					0.0850360521968696
VVIGPALR	8	Unmodified	_VVIGPALR_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.5352493376001	1	824.535249	823.527973	-0.39128	-0.00032263	2.3259	0.0019178	1.9347	0.0015952	824.537785327942	56.923	0.095886	56.922	56.874	56.97	-0.00056458	402	67	1.3804773	0.039313793	1.3789579	281.09598	0	8.005188						173	5	4	NaN	NaN	NaN	0.84876	1	4955	4955		0.39566	0	1	25484			29693	5585	17146	17622	23668	23668					0.10915000347949899
VVKEIPIT	8	Unmodified	_VVKEIPIT_					0	0	0		nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6	nc|ENSG00000072133|Q9UK32-2|RPS6KA6	nc|ENSG00000072133|Q9UK32-2|RPS6KA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	898.5607953861	1	898.560795	897.553519	1.0285	0.00092418	0.88927	0.00079907	1.9178	0.0017233	898.5620925882174	33.527	0.072411	33.525	33.501	33.573	-0.0018501	303	46	1.4393384	0.026703835	1.437819	292.68445	0	5.4301453						70	4	2	NaN	NaN	NaN	0.74229	1	5917	5917		16.417	2.3751	1	5688.1			29694	788	17147	17623	23669	23669					0.10064430079705744
VVKVLNGI	8	Unmodified	_VVKVLNGI_					0	0	0		ENST00000433165.6_1_6:154727490-154754936:-|nuORF;ENSG00000153721|ENST00000607772|CNKSR3;nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3	ENST00000433165.6_1_6:154727490-154754936:-|nuORF	ENST00000433165.6_1_6:154727490-154754936:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	841.5505650508002	1	841.550565	840.543289	1.7415	0.0014655	-0.79847	-0.00067195	0.94301	0.00079359	841.5494818326067	58.005	0.096104	58.005	57.981	58.077	0	375	55	1.3965509	0.03213501	1.3965509	284.27444	0	6.54126						121	5	3	NaN	NaN	NaN	0.84887	1	5278	5278		0.32989	0	1	19791			29695	3814	17148	17624	23670	23670					0.11663867145136919
VVKVSAAP	8	Unmodified	_VVKVSAAP_					0	0	0		ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	770.4770657567	1	770.477066	769.469789	1.6479	0.0012697	-3.0284	-0.0023333	-1.3805	-0.0010636	770.4744177754391	27.736	0.16892	27.736	27.712	27.881	0	576	43	1.2765218	0.025167823	1.2765218	260.22778	0	5.1306458						116	8	2	NaN	NaN	NaN	0.84887	1	4352	4352		0.32989	0	1	10124			29696	22	17149	17625	23671	23671					0.07583318702654651
VVLAIPALA	9	Unmodified	_VVLAIPALA_					0	0	0			REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.5709661418998	1	866.570966	865.56369	1.8273	0.0015835	-3.8773	-0.00336	-2.05	-0.0017765	866.5674244033586	55.701	0.19254	55.701	55.604	55.797	0	339	55	1.4179583	0.032087207	1.4179583	288.49777	0	6.528473						211	9	3	NaN	NaN	NaN	0.6907	1	5615	5615		0	0	1	23117	+		29697	13532	17150	17626	23672	23672					0.12553037804912037
VVLAIPALA	9	Unmodified						0	0	0			REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	REV__tr|U7SV79|U7SV79_FUSNUUracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01162PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	866.570966	865.56369	1.8273	0.0015835	-3.8773	-0.00336	-2.05	-0.0017765	866.5674244033586	55.701	0.19254	55.701	55.604	55.797	0	339	55	1.4179583	0.032087207	1.4179583	288.49777		6.528473	0	0	0	NaN	0	211	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23117	+		29698	13532	17150	17626							0.12553037804912037
VVLGPPAA	8	Unmodified	_VVLGPPAA_					0	0	0			REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4399519688999	1	723.439952	722.432676	1.417	0.0010251	-4.5108	-0.0032633	-3.0938	-0.0022382	723.4363414283071	58.005	0.072067	58.005	57.957	58.029	0	648	52	1.2333171	0.03064096	1.2333171	251.70679	0	6.2534943						80	4	2	NaN	NaN	NaN	0.84945	1	3651	3651		0	0	1	12572	+		29699	12317	17151	17627	23673	23673					0.060356471568866255
VVLGPPAA	8	Unmodified	_VVLGPPAA_					0	0	0			REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4399519688999	1	723.439952	722.432676	-0.50001	-0.00036173	-1.9149	-0.0013853	-2.4149	-0.0017471	723.438352048592	55.242	0.072189	55.242	55.217	55.29	-0.00061798	651	73	1.2315145	0.04324639	1.229995	251.33888	0	8.826096						131	4	3	NaN	NaN	NaN	0.84945	1	3568	3568		0	0	1	26181	+		29700	12317	17151	17627	23674	23674					0.060356471568866255
VVLGPPAA	8	Unmodified	_VVLGPPAA_					0	0	0			REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.4399519688999	1	723.439952	722.432676	-0.47436	-0.00034317	-1.7853	-0.0012916	-2.2597	-0.0016348	723.438601297763	58.003	0.096161	58.002	57.93	58.026	-0.00051117	645	46	1.2351195	0.027033329	1.2336	252.07463	0	5.5171967						122	5	3	NaN	NaN	NaN	0.84945	1	3569	3569		0	0	1	15551	+		29701	12317	17151	17627	23675	23675					0.060356471568866255
VVLGPPAA	8	Unmodified						0	0	0			REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	723.439952	722.432676	1.417	0.0010251	-4.5108	-0.0032633	-3.0938	-0.0022382	723.4363414283071	58.005	0.072067	58.005	57.957	58.029	0	648	52	1.2333171	0.03064096	1.2333171	251.70679		6.2534943	0.0013901	-0.001073	-0.00014149	NaN	0	80	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12572	+		29702	12317	17151	17627							0.060356471568866255
VVLGPPAA	8	Unmodified						0	0	0			REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	REV__ENST00000481801.5_1_2:134877633-135011843:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	723.439952	722.432676	-0.47436	-0.00034317	-1.7853	-0.0012916	-2.2597	-0.0016348	723.438601297763	58.003	0.096161	58.002	57.93	58.026	-0.00051117	645	46	1.2351195	0.027033329	1.2336	252.07463		5.5171967	-0.0013901	0.00089876	0.00014149	NaN	0	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15551	+		29703	12317	17151	17627							0.060356471568866255
VVLKAAPI	8	Unmodified	_VVLKAAPI_					0	0	0			REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.5447513913999	1	810.544751	809.537475	2.3679	0.0019193	-12.178	-0.0098711	-9.8105	-0.0079518	810.5347812570323	54.524	0.072334	54.524	54.5	54.572	0	576	1033	1.2765218	0.61786574	1.2765218	260.00208	0	125.846954						1634	4	2	NaN	NaN	NaN	0.84945	1	4885	4885		0	0	1	181730	+		29704	12688	17152	17628	23676	23676					0.12508768633449563
VVLKAAPI	8	Unmodified	_VVLKAAPI_					0	0	0			REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	810.5447513913999	1	810.544751	809.537475	0.11739	9.5153E-05	-9.953	-0.0080673	-9.8356	-0.0079722	810.5365019113573	54.522	0.048187	54.521	54.497	54.545	-0.0006218	546	1069	1.294491	0.64003783	1.2929716	263.66205	0	130.36296						1634	3	2	NaN	NaN	NaN	0.84945	1	4790	4790		0	0	1	181420	+		29705	12688	17152	17628	23677	23677					0.12508768633449563
VVLKAAPI	8	Unmodified						0	0	0			REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	810.544751	809.537475	2.3679	0.0019193	-12.178	-0.0098711	-9.8105	-0.0079518	810.5347812570323	54.524	0.072334	54.524	54.5	54.572	0	576	1033	1.2765218	0.61786574	1.2765218	260.00208		125.846954	0.0013694	-0.00092611	-0.0082249	NaN	0	1634	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181730	+		29706	12688	17152	17628							0.12508768633449563
VVLKAAPI	8	Unmodified						0	0	0			REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	810.544751	809.537475	0.11739	9.5153E-05	-9.953	-0.0080673	-9.8356	-0.0079722	810.5365019113573	54.522	0.048187	54.521	54.497	54.545	-0.0006218	546	1069	1.294491	0.64003783	1.2929716	263.66205		130.36296	-0.0013694	0.00087766	0.0082249	NaN	0	1634	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181420	+		29707	12688	17152	17628							0.12508768633449563
VVLKGIVT	8	Unmodified	_VVLKGIVT_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	828.5553160777002	1	828.555316	827.54804	1.9171	0.0015884	2.7195	0.0022532	4.6365	0.0038416	828.5572311104553	54.308	0.11988	54.308	54.26	54.38	0	393	49	1.3858368	0.028579712	1.3858368	282.1648	0	5.8190002						156	6	3	NaN	NaN	NaN	0.84945	1	5120	5120		0	0	1	15615	+		29708	10507	17153	17629	23678	23678					0.1273675128791183
VVLLGPYS	8	Unmodified	_VVLLGPYS_					0	0	0			REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	REV__SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.24982896825	2	424.249829	846.485105	1.445	0.00061303	-2.3327	-0.00098965	-0.88771	-0.00037661	424.2492185131692	35.529	0.38579	35.529	35.481	35.867	0.00053024	1368	316	0.7950918	0.1944176	0.79357237	323.64658	0	79.13876						2420	17	6	NaN	NaN	NaN	0.81807	1	5214	5214		6.794	0	1	2181700	+		29709	9570	17154	17630	23679	23679					0.05572185499852367
VVLLKKHIL	9	Unmodified	_VVLLKKHIL_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.7397628047	1	1062.73976	1061.73249	2.0695	0.0021994	-6.1294	-0.0065139	-4.0598	-0.0043145	1062.7336892490218	39.163	0.6017	39.168	39.071	39.673	0.0046806	201	106	1.4997677	0.0621109	1.4982482	304.25952	0	12.600494						1745	26	5	NaN	NaN	NaN	0.6907	1	10949	10949		0	0	1	799980			29710	1345	17155	17631	23680	23680					0.20408939438448215
VVLLKPPL	8	Unmodified	_VVLLKPPL_					0	0	0		CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	878.6073516482	1	878.607352	877.600075	1.7369	0.0015261	-3.6853	-0.003238	-1.9484	-0.0017119	878.6036558450918	58.773	0.071915	58.773	58.749	58.82	0	285	64	1.4500183	0.03736949	1.4500183	294.9574	0	7.6015625						124	4	3	NaN	NaN	NaN	0.84945	1	5770	5770		0	0	1	22144			29711	86	17156	17632	23681	23681					0.156379147016537
VVLLKPPL	8	Unmodified	_VVLLKPPL_					0	0	0		CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	878.6073516482	1	878.607352	877.600075	-0.52519	-0.00046144	-0.39994	-0.00035139	-0.92513	-0.00081282	878.606635263528	58.77	0.071896	58.77	58.746	58.818	-0.00045395	282	67	1.4517976	0.039151073	1.4502782	295.3193	0	7.9639893						133	4	3	NaN	NaN	NaN	0.84945	1	5645	5645		0	0	1	25651			29712	86	17156	17632	23682	23682					0.156379147016537
VVLLPAGP	8	Unmodified	_VVLLPAGP_					0	0	0			REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	765.4869021615001	1	765.486902	764.479626	-0.13338	-0.0001021	8.7683	0.006712	8.6349	0.0066099	765.495072933176	55.698	0.12041	55.698	55.674	55.794	-0.00059128	426	49	1.3661768	0.02861321	1.3646574	278.53635	0	5.8336487						151	6	3	NaN	NaN	NaN	0.84876	1	4209	4209		0.39566	0	1	10715	+		29713	12547	17157	17633	23683	23683					0.08796506708040397
VVLLPGSY	8	Unmodified	_VVLLPGSY_					0	0	0			REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.24982896825003	2	424.249829	846.485105	1.3981	0.00059314	0.29644	0.00012576	1.6945	0.0007189	424.24955557247426	33.744	0.048264	33.742	33.718	33.766	-0.0018463	1443	31	0.7487872	0.018544972	0.7472678	304.79803	0	7.548828						40	3	2	NaN	NaN	NaN	0.84692	1	5217	5217		1.4396	0	1	2460.9	+		29714	12486	17158	17634	23684	23684					0.055721854998637355
VVLPDTPPG	9	Unmodified	_VVLPDTPPG_					0	0	0			REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	894.4931097514	1	894.49311	893.485833	1.5149	0.0013551	0.29889	0.00026736	1.8138	0.0016224	894.4942847533101	26.818	0.072422	26.808	26.735	26.808	-0.010645	360	46	1.405474	0.026754975	1.4039545	285.81787	0	5.440918						76	4	2	NaN	NaN	NaN	0.47587	1	5864	5864		10.605	0.85897	1	5163.5	+		29715	12787	17159	17635	23685	23685					0.03482980148896786
VVLPDTPPG	9	Unmodified						0	0	0			REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	894.49311	893.485833	1.6188	0.001448	-1.8548	-0.0016591	-0.23596	-0.00021106	894.4910485088953	26.795	0.048677	26.795	26.77	26.819	0	363	46	1.4036897	0.026763558	1.4036897	285.45505		5.4426575	-0.0063293	-0.00098564	-0.0001324	NaN	10.605	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4753.3	+		29716	12787	17159	17635							0.03482980148896786
VVLPDTPPG	9	Unmodified						0	0	0			REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	REV__ENST00000561209.1_1_15:85805028-85805406:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	894.49311	893.485833	1.5149	0.0013551	0.29889	0.00026736	1.8138	0.0016224	894.4942847533101	26.818	0.072422	26.808	26.735	26.808	-0.010645	360	46	1.405474	0.026754975	1.4039545	285.81787		5.440918	0.0063293	0.00094082	0.0001324	NaN	10.605	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5163.5	+		29717	12787	17159	17635							0.03482980148896786
VVLPGAPQ	8	Unmodified	_VVLPGAPQ_					0	0	0		ENST00000597346.1_1_11:2720561-2721134:-|nuORF	ENST00000597346.1_1_11:2720561-2721134:-|nuORF	ENST00000597346.1_1_11:2720561-2721134:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	780.4614156925	1	780.461416	779.454139	1.3781	0.0010756	-3.0944	-0.0024151	-1.7163	-0.0013395	780.4593775208555	28.821	0.16892	28.813	28.74	28.909	-0.0083504	579	73	1.2747238	0.043154	1.2732043	259.80292	0	8.795258						255	8	3	NaN	NaN	NaN	0.84727	1	4404	4404		1.2418	0.84618	1	50975			29718	7758	17160	17636	23686	23686					0.055590321856129776
VVLVGPSL	8	Unmodified	_VVLVGPSL_					0	0	0		ENST00000550483.5_1_12:49218969-49220098:+|nuORF;ENST00000552480.1_1_12:49218912-49220219:+|nuORF;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;ENSG00000182389|ENST00000539935|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;ENSG00000167535|ENST00000301050|CACNB3;nc|ENSG00000167535|P54284-4|CACNB3;nc|ENSG00000167535|P54284-3|CACNB3;nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000167535|P54284-2|CACNB3;nc|ENSG00000167535|P54284-5|CACNB3;ENST00000548860.5_1_12:49218876-49221679:+|nuORF;ENSG00000165995|ENST00000324631|CACNB2	ENST00000550483.5_1_12:49218969-49220098:+|nuORF	ENST00000550483.5_1_12:49218969-49220098:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.4974668478002	1	783.497467	782.49019	1.8654	0.0014615	4.3016	0.0033703	6.167	0.0048318	783.5000953859584	56.373	0.07196	56.373	56.349	56.421	0	360	61	1.405474	0.03568673	1.405474	286.43198	0	7.2728577						130	4	3	NaN	NaN	NaN	0.84876	1	4535	4535		0.39566	0	1	20273			29719	4440	17161	17637	23687	23687					0.09024489362479926
VVLVGPSL	8	Unmodified						0	0	0		ENST00000550483.5_1_12:49218969-49220098:+|nuORF;ENST00000552480.1_1_12:49218912-49220219:+|nuORF;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;ENSG00000182389|ENST00000539935|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;nc|ENSG00000283228|O00305-2|CACNB4;ENSG00000167535|ENST00000301050|CACNB3;nc|ENSG00000167535|P54284-4|CACNB3;nc|ENSG00000167535|P54284-3|CACNB3;nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000167535|P54284-2|CACNB3;nc|ENSG00000167535|P54284-5|CACNB3;ENST00000548860.5_1_12:49218876-49221679:+|nuORF;ENSG00000165995|ENST00000324631|CACNB2	ENST00000550483.5_1_12:49218969-49220098:+|nuORF	ENST00000550483.5_1_12:49218969-49220098:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	783.497467	782.49019	-0.21869	-0.00017134	6.2025	0.0048597	5.9839	0.0046883	783.5021435769328	56.371	0.071926	56.37	56.346	56.418	-0.00056458	354	91	1.4090419	0.0535357	1.4075224	287.15912		10.910431	-0.001275	0.0008161	0.0010242	NaN	0.39566	140	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22420			29720	4440	17161	17637							0.09024489362479926
VVLVVGAK	8	Unmodified	_VVLVVGAK_					0	0	0		ENSG00000076321|ENST00000209884|KLHL20;ENST00000493170.1_1_1:173684720-173703518:+|nuORF	ENSG00000076321|ENST00000209884|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.5291013272001	1	784.529101	783.521825	2.0989	0.0016466	2.5167	0.0019744	4.6156	0.0036211	784.5311676379276	54.068	0.1918	54.068	54.02	54.212	0	438	115	1.359022	0.06804347	1.359022	276.95892	0	13.86676						410	9	4	NaN	NaN	NaN	0.84887	1	4549	4549		0.32989	0	1	110480			29721	855	17162	17638	23688	23688					0.12140482116421936
VVMDQEPAG	9	Unmodified	_VVMDQEPAG_					0	0	0		nc|ENSG00000243772|P43628-2|KIR2DL3;ENSG00000243772|ENST00000342376|KIR2DL3;nc|ENSG00000242019|Q8N743|KIR3DL3;ENSG00000242019|ENST00000291860|KIR3DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	945.4346085945001	1	945.434609	944.427332	2.2209	0.0020997	-8.6815	-0.0082078	-6.4606	-0.0061081	945.4294077783627	26.07	0.16899	26.059	25.987	26.156	-0.011137	333	142	1.4215236	0.0838058	1.4200041	288.84518	0	17.02884						410	8	3	NaN	NaN	NaN	0.16171	1	6785	6785		27.789	1.6739	1	61558			29722	6075	17163	17639	23689	23689					-0.0471044448787552
VVMDQEPAG	9	Unmodified						0	0	0		nc|ENSG00000243772|P43628-2|KIR2DL3;ENSG00000243772|ENST00000342376|KIR2DL3;nc|ENSG00000242019|Q8N743|KIR3DL3;ENSG00000242019|ENST00000291860|KIR3DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	nc|ENSG00000243772|P43628-2|KIR2DL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	945.434609	944.427332	2.1953	0.0020755	-8.2095	-0.0077616	-6.0143	-0.0056861	945.4292314585225	26.07	0.21723	26.07	25.974	26.191	0	333	151	1.4215236	0.089169264	1.4215236	288.84518		18.118683	0.005674	0.00020215	0.00075972	NaN	27.789	451	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65936			29723	6075	17163	17639							-0.0471044448787552
VVNLACLA	8	Unmodified	_VVNLACLA_					0	0	0			REV__ENST00000552816.5_3_12:58138937-58139531:+|nuORF	REV__ENST00000552816.5_3_12:58138937-58139531:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	802.4491364467001	1	802.449136	801.44186	2.2805	0.00183	-5.9443	-0.00477	-3.6638	-0.00294	802.4439985284247	25.322	0.24128	25.322	25.274	25.515	0	492	106	1.3267875	0.06279528	1.3267875	270.2857	0	12.792297						350	11	3	NaN	NaN	NaN	0.62311	1	4763	4763		23.85	1.7241	1	65759	+		29724	9618	17164	17640	23690	23690					0.03319672450925282
VVNLACLA	8	Unmodified						0	0	0			REV__ENST00000552816.5_3_12:58138937-58139531:+|nuORF	REV__ENST00000552816.5_3_12:58138937-58139531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	802.449136	801.44186	2.2805	0.00183	-5.9443	-0.00477	-3.6638	-0.00294	802.4439985284247	25.322	0.24128	25.322	25.274	25.515	0	492	106	1.3267875	0.06279528	1.3267875	270.2857		12.792297	0.0061467	-0.00046327	0.00075972	NaN	23.85	350	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65759	+		29725	9618	17164	17640							0.03319672450925282
VVPEGGGGPAY	11	Unmodified	_VVPEGGGGPAY_					0	0	0		nc|ENSG00000171503|Q16134-3|ETFDH;ENSG00000171503|ENST00000511912|ETFDH	nc|ENSG00000171503|Q16134-3|ETFDH	nc|ENSG00000171503|Q16134-3|ETFDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	501.7481817363	2	501.748182	1001.48181	1.9933	0.0010001	0.88003	0.00044156	2.8733	0.0014417	501.74886391382904	17.741	0.095863	17.741	17.741	17.837	0	1305	67	0.83389086	0.040618062	0.83389086	338.6011	0	16.49292						119	5	2	NaN	NaN	NaN	0.688	1	8645	8645		8.2448	0.70444	1	9163.6			29726	4788	17165	17641	23691	23691					-0.018871093448069587
VVPFVAVLG	9	Unmodified	_VVPFVAVLG_					0	0	0			REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	900.5553160777001	1	900.555316	899.54804	-0.12526	-0.00011281	-5.1801	-0.0046649	-5.3053	-0.0047777	900.5516023400057	56.779	0.096146	56.778	56.754	56.85	-0.00056458	177	70	1.5139546	0.04078102	1.5124352	307.8471	0	8.292419						173	5	3	NaN	NaN	NaN	0.6762	1	5961	5961		1.2418	0.31598	1	12181	+		29727	10085	17166	17642	23692	23692					0.09424751287895106
VVPFVAVLG	9	Unmodified						0	0	0			REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	900.555316	899.54804	1.8206	0.0016396	-9.7187	-0.0087522	-7.8981	-0.0071127	900.5499896851828	56.78	0.072128	56.78	56.756	56.828	0	183	67	1.510409	0.039010048	1.510409	307.12616		7.9322815	0.0011122	-0.0024297	-0.0010131	NaN	1.2418	205	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14621	+		29728	10085	17166	17642							0.09424751287895106
VVPFVAVLG	9	Unmodified						0	0	0			REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	900.555316	899.54804	-0.12526	-0.00011281	-5.1801	-0.0046649	-5.3053	-0.0047777	900.5516023400057	56.779	0.096146	56.778	56.754	56.85	-0.00056458	177	70	1.5139546	0.04078102	1.5124352	307.8471		8.292419	-0.0011122	0.0016577	0.0010131	NaN	1.2418	173	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12181	+		29729	10085	17166	17642							0.09424751287895106
VVPIPVHV	8	Unmodified	_VVPIPVHV_					0	0	0		ENSG00000164900|ENST00000297537|GBX1;ENSG00000168505|ENST00000306318|GBX2	ENSG00000164900|ENST00000297537|GBX1	ENSG00000164900|ENST00000297537|GBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	859.5400003645001	1	859.54	858.532724	2.0531	0.0017647	0.51168	0.00043981	2.5648	0.0022045	859.5407009838696	59.061	0.096088	59.061	59.037	59.133	0	354	40	1.4090419	0.023187757	1.4090419	286.7203	0	4.7183533						67	5	2	NaN	NaN	NaN	0.84876	1	5520	5520		0.39566	0	1	4153.6			29730	4353	17167	17643	23693	23693					0.09779884490706081
VVPLSLIV	8	Unmodified	_VVPLSLIV_					0	0	0			REV__ENST00000456812.6_1_1:173833058-173833262:-|nuORF	REV__ENST00000456812.6_1_1:173833058-173833262:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.5600671046002	1	839.560067	838.552791	1.7773	0.0014921	4.2372	0.0035574	6.0145	0.0050495	839.5628831770852	52.859	0.095764	52.859	52.835	52.93	0	525	73	1.3070582	0.043061852	1.3070582	266.06793	0	8.765778						167	5	3	NaN	NaN	NaN	0.84887	1	5256	5256		0.32989	0	1	21809	+		29731	12066	17168	17644	23694	23694					0.12705635430666007
VVPMAGPG	8	Unmodified	_VVPMAGPG_					0	0	0		ENST00000494697.5_1_20:2633306-2634895:+|nuORF	ENST00000494697.5_1_20:2633306-2634895:+|nuORF	ENST00000494697.5_1_20:2633306-2634895:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.3807225305002	1	727.380723	726.373446	0.65797	0.00047859	-0.44513	-0.00032378	0.21284	0.00015482	727.3800339441628	33.311	0.12067	33.311	33.262	33.383	0	750	37	1.1719203	0.021708965	1.1719203	239.15218	0	4.4301147						89	6	2	NaN	NaN	NaN	0.84945	1	3710	3710		0	0	1	7963.2			29732	7283	17169	17645	23695	23695					-0.0006857212891873132
VVPMLPKRRR	10	Unmodified	_VVPMLPKRRR_					0	0	0		ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7830413779	1	1251.78304	1250.77576	2.0232	0.0025325	-2.0315	-0.002543	-0.0083881	-1.05E-05	1251.7821462325514	39.694	0.096428	39.694	39.694	39.791	0	72	79	1.5758814	0.045912623	1.5758814	319.08017	0	9.296265						504	5	5	NaN	NaN	NaN	0.77884	1	17797	17797		0.79988	0.20265	1	150600			29733	7270	17170	17646	23696	23696					0.16040805944089698
VVPMLPKRRR	10	Unmodified	_VVPMLPKRRR_					0	0	0		ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1251.7830413779	1	1251.78304	1250.77576	2.1145	0.0026469	-1.6064	-0.0020108	0.50818	0.00063613	1251.7809844346743	41.185	0.12018	41.185	41.089	41.209	0	69	85	1.5776473	0.049460053	1.5776473	319.43774	0	10.014526						471	6	4	NaN	NaN	NaN	0.77884	1	17799	17799		0.79988	0.20265	1	98745			29734	7270	17170	17646	23697	23697					0.16040805944089698
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016479002	1	653.361702	652.354425	0.72086	0.00047099	0.81841	0.00053472	1.5393	0.0010057	653.362203084753	41.209	0.14438	41.209	41.185	41.329	0	771	61	1.1592519	0.03620875	1.1592519	237.0634	0	7.4045715						151	7	2	NaN	NaN	NaN	0.84945	1	2130	2130		0	0	1	19151	+		29735	9071	17171	17647	23698	23698					0.01434214571679604
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016479002	1	653.361702	652.354425	0.58489	0.00038214	1.3767	0.00089947	1.9616	0.0012816	653.3623492222277	40.176	0.12022	40.176	40.104	40.224	0	768	55	1.1610622	0.03258431	1.1610622	237.43361	0	6.663391						139	6	2	NaN	NaN	NaN	0.84945	1	2131	2131		0	0	1	18248	+		29736	9071	17171	17647	23699	23699					0.01434214571679604
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.3617016479002	1	653.361702	652.354425	0.73663	0.00048129	1.6626	0.0010863	2.3993	0.0015676	653.3630360337513	41.474	0.12042	41.474	41.377	41.498	0	774	82	1.1574414	0.048915863	1.1574414	236.69315	0	10.003143						206	6	2	NaN	NaN	NaN	0.84945	1	2132	2132		0	0	1	20594	+		29737	9071	17171	17647	23700	23700					0.01434214571679604
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479002	1	653.361702	652.354425	0.37051	0.00024208	2.1368	0.0013961	2.5073	0.0016382	653.3627678840339	41.328	0.12038	41.336	41.24	41.36	0.0082626	771	55	1.1592519	0.032591343	1.1577325	237.06339	0	6.6648254						121	6	2	NaN	NaN	NaN	0.84945	1	2046	2046		0	0	1	12539	+		29738	9071	17171	17647	23701	23701					0.01434214571679604
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479002	1	653.361702	652.354425	0.25692	0.00016786	2.348	0.0015341	2.6049	0.001702	653.3637449916454	41.641	0.21648	41.649	41.577	41.793	0.0082588	765	49	1.1628724	0.028960705	1.161353	237.80377	0	5.9223785						285	10	3	NaN	NaN	NaN	0.84945	1	2047	2047		0	0	1	35349	+		29739	9071	17171	17647	23702	23702					0.01434214571679604
VVPPGAGG	8	Unmodified	_VVPPGAGG_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.3617016479002	1	653.361702	652.354425	0.37435	0.00024459	8.3658	0.0054659	8.7402	0.0057105	653.3671207021322	33.72	0.12068	33.718	33.67	33.79	-0.0018463	675	46	1.2170867	0.027059317	1.2155672	248.89038	0	5.533539						96	6	3	NaN	NaN	NaN	0.84945	1	2048	2048		0	0	1	6941.9	+		29740	9071	17171	17647	23703	23703					0.01434214571679604
VVPPGAGG	8	Unmodified						0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.58489	0.00038214	1.3767	0.00089947	1.9616	0.0012816	653.3623492222277	40.176	0.12022	40.176	40.104	40.224	0	768	55	1.1610622	0.03258431	1.1610622	237.43361		6.663391	0	0	0	NaN	0	139	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18248	+		29741	9071	17171	17647							0.01434214571679604
VVPPGAGG	8	Unmodified						0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	653.361702	652.354425	0.73663	0.00048129	1.6626	0.0010863	2.3993	0.0015676	653.3630360337513	41.474	0.12042	41.474	41.377	41.498	0	774	82	1.1574414	0.048915863	1.1574414	236.69315		10.003143	-0.08753	-0.00023238	-0.0019558	NaN	0	206	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20594	+		29742	9071	17171	17647							0.01434214571679604
VVPPGAGG	8	Unmodified						0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	653.361702	652.354425	0.25692	0.00016786	2.348	0.0015341	2.6049	0.001702	653.3637449916454	41.641	0.21648	41.649	41.577	41.793	0.0082588	765	49	1.1628724	0.028960705	1.161353	237.80377		5.9223785	0.08753	0.00021541	0.0019558	NaN	0	285	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35349	+		29743	9071	17171	17647							0.01434214571679604
VVPPLALP	8	Unmodified	_VVPPLALP_					0	0	0		ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.5182022898999	1	805.518202	804.510926	-0.042839	-3.4507E-05	-1.7664	-0.0014229	-1.8093	-0.0014574	805.5166148201685	55.146	0.14431	55.145	55.121	55.266	-0.00061798	435	133	1.360811	0.07881236	1.3592916	277.19894	0	16.054169						264	7	3	NaN	NaN	NaN	0.84945	1	4715	4715		0	0	1	95334			29744	5035	17172	17648	23704	23704					0.10085079742123071
VVPPPLPATWM	11	Unmodified	_VVPPPLPATWM_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.33082733095	2	604.330827	1206.6471	1.7612	0.0010644	7.2539	0.0043838	9.0152	0.0054481	604.3358417456953	25.781	0.19301	25.781	25.708	25.901	0	1125	34	0.9442611	0.020167947	0.9442611	382.53207	0	8.170288						102	9	2	NaN	NaN	NaN	0.688	1	16654	16654		8.2448	1.8149	1	9414.9			29745	6084	17173	17649	23705	23705					0.05204406190478039
VVPQVLVK	8	Unmodified	_VVPQVLVK_					0	0	0			REV__ENST00000246548.8_1_19:34929650-34934775:+|nuORF	REV__ENST00000246548.8_1_19:34929650-34934775:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.5818651792002	1	881.581865	880.574589	1.8342	0.001617	0.73895	0.00065145	2.5731	0.0022684	881.5829470917415	57.981	0.12011	57.981	57.885	58.005	0	327	49	1.425088	0.028509855	1.425088	289.87103	0	5.7990723						90	6	2	NaN	NaN	NaN	0.84887	1	5816	5816		0.32989	0	1	6193.9	+		29746	11501	17174	17650	23706	23706					0.1295244017924233
VVPRTLLA	8	Unmodified	_VVPRTLLA_					0	0	0			REV__ENSG00000182168|ENST00000453304|UNC5C	REV__ENSG00000182168|ENST00000453304|UNC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	868.5614640881001	1	868.561464	867.554188	1.7368	0.0015085	3.0485	0.0026478	4.7853	0.0041563	868.5635835597186	56.924	0.024025	56.924	56.924	56.948	0	336	58	1.419741	0.03387165	1.419741	288.85007	0	6.8912964						88	2	3	NaN	NaN	NaN	0.84876	1	5637	5637		0.39566	0	1	10953	+		29747	10859	17175	17651	23707	23707					0.11511269519417056
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8054996499501	2	560.8055	1119.59645	0.66704	0.00037408	-5.0514	-0.0028329	-4.3844	-0.0024588	560.8048327482974	31.741	0.1931	31.737	31.64	31.833	-0.0044155	1221	112	0.885486	0.06807989	0.88396657	359.0368	0	27.604279						445	9	3	NaN	NaN	NaN	0.1667	1	13261	13261		33.425	7.3104	1	71316			29748	4568	17176	17652	23708	23708					0.04143200137150416
VVPSGGFFPTI	11	Unmodified						0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.8055	1119.59645	1.148	0.0006438	-4.6037	-0.0025818	-3.4557	-0.001938	560.8034488267015	31.742	0.1448	31.742	31.67	31.815	0	1245	106	0.87076044	0.064413846	0.87076044	353.06604		26.117767	0.0027523	0.00030503	-0.006603	NaN	33.425	357	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61028			29749	4568	17176	17652							0.04143200137150416
VVPTAGGG	8	Unmodified	_VVPTAGGG_					0	0	0			REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.3566162700002	1	657.356616	656.34934	1.2223	0.0008035	4.3871	0.0028839	5.6094	0.0036874	657.3602744941336	36.808	0.072205	36.808	36.784	36.856	0	726	37	1.1863867	0.02169025	1.1863867	242.58203	0	4.4350433						65	4	2	NaN	NaN	NaN	0.84945	1	2201	2201		0	0	1	3950.3	+		29750	8629	17177	17653	23709	23709					0.007419107090640864
VVPTAGGG	8	Unmodified						0	0	0			REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	657.356616	656.34934	1.2223	0.0008035	4.3871	0.0028839	5.6094	0.0036874	657.3602744941336	36.808	0.072205	36.808	36.784	36.856	0	726	37	1.1863867	0.02169025	1.1863867	242.58203		4.4350433	-0.10821	0.0013077	-0.0010476	NaN	0	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3950.3	+		29751	8629	17177	17653							0.007419107090640864
VVPTAGGG	8	Unmodified						0	0	0			REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	657.356616	656.34934	1.8807	0.0012363	0.26078	0.00017142	2.1415	0.0014077	657.3583158501178	37.022	0.048042	37.024	37	37.048	0.0022507	720	37	1.1900014	0.02168572	1.1884819	243.32115		4.4340973	0.10821	-0.0014048	0.0010476	NaN	0	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2587.9	+		29752	8629	17177	17653							0.007419107090640864
VVPTGPPG	8	Unmodified	_VVPTGPPG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.4035664626001	1	723.403566	722.39629	0.70346	0.00050889	6.7091	0.0048534	7.4125	0.0053623	723.4078354019505	35.506	0.072388	35.506	35.482	35.554	0	591	40	1.26753	0.02338636	1.26753	258.68945	0	4.772888						60	4	2	NaN	NaN	NaN	0.84876	1	3647	3647		0.39566	0	1	4673.1	+		29753	10114	17178	17654	23710	23710					0.02398770260197125
VVPVGGGG	8	Unmodified	_VVPVGGGG_					0	0	0		ENSG00000167720|ENST00000344595|SRR	ENSG00000167720|ENST00000344595|SRR	ENSG00000167720|ENST00000344595|SRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3617016479002	1	641.361702	640.354425	0.98275	0.0006303	-0.81058	-0.00051987	0.17217	0.00011043	641.3612068462074	39.694	0.072296	39.694	39.694	39.767	0	810	64	1.1356999	0.038070202	1.1356999	232.3364	0	7.7882233						105	4	2	NaN	NaN	NaN	0.84945	1	1749	1749		0	0	1	8896.6			29754	4565	17179	17655	23711	23711					0.019862145716729174
VVPVGGGG	8	Unmodified	_VVPVGGGG_					0	0	0		ENSG00000167720|ENST00000344595|SRR	ENSG00000167720|ENST00000344595|SRR	ENSG00000167720|ENST00000344595|SRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.3617016479002	1	641.361702	640.354425	0.39755	0.00025497	6.277	0.0040258	6.6745	0.0042808	641.3655926400909	56.371	0.28779	56.37	56.25	56.538	-0.00056458	630	223	1.2441287	0.13365746	1.2426093	254.51822	0	27.343033						687	13	3	NaN	NaN	NaN	0.84945	1	1657	1657		0	0	1	165620			29755	4565	17179	17655	23712	23712					0.019862145716729174
VVPVLLGLL	9	Unmodified	_VVPVLLGLL_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-6|ZAN	REV__nc|ENSG00000146839|Q9Y493-6|ZAN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	922.6335663987003	1	922.633566	921.62629	1.8693	0.0017247	-1.7483	-0.001613	0.12107	0.0001117	922.6318102268779	58.749	0.023987	58.749	58.749	58.773	0	219	40	1.4891195	0.023077011	1.4891195	302.68784	0	4.690796						46	2	2	NaN	NaN	NaN	0.6907	1	6441	6441		0	0	1	4977	+		29756	9952	17180	17656	23713	23713					0.16234183873143593
VVPVLLGLL	9	Unmodified						0	0	0			REV__nc|ENSG00000146839|Q9Y493-6|ZAN	REV__nc|ENSG00000146839|Q9Y493-6|ZAN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	922.633566	921.62629	1.8693	0.0017247	-1.7483	-0.001613	0.12107	0.0001117	922.6318102268779	58.749	0.023987	58.749	58.749	58.773	0	219	40	1.4891195	0.023077011	1.4891195	302.68784		4.690796	0.0013139	-0.00024393	0.00075972	NaN	0	46	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4977	+		29757	9952	17180	17656							0.16234183873143593
VVQDHYVDW	9	Unmodified	_VVQDHYVDW_					0	0	0		nc|ENSG00000161904|Q8NC56-2|LEMD2;ENSG00000161904|ENST00000293760|LEMD2	nc|ENSG00000161904|Q8NC56-2|LEMD2	nc|ENSG00000161904|Q8NC56-2|LEMD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.77218814885	2	580.772188	1159.52982	2.1225	0.0012327	-2.0497	-0.0011904	0.072771	4.2264E-05	580.7709013168225	22.621	0.24123	22.621	22.573	22.814	0	1191	85	0.90387505	0.05146706	0.90387505	366.33942	0	20.859558						335	11	4	NaN	NaN	NaN	0.27608	1	15114	15114		20.449	0	1	75041			29758	4107	17181	17657	23714	23714					-0.043560354247802024
VVQDHYVDW	9	Unmodified						0	0	0		nc|ENSG00000161904|Q8NC56-2|LEMD2;ENSG00000161904|ENST00000293760|LEMD2	nc|ENSG00000161904|Q8NC56-2|LEMD2	nc|ENSG00000161904|Q8NC56-2|LEMD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	580.772188	1159.52982	1.5217	0.00088373	-0.99047	-0.00057524	0.53119	0.0003085	580.7712219743387	22.669	0.21703	22.655	22.583	22.8	-0.01354	1182	70	0.9093879	0.042278767	0.90786844	368.57376		17.135529	0.017053	0.00078593	0.0019967	NaN	20.449	306	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69029			29759	4107	17181	17657							-0.043560354247802024
VVQGPGGG	8	Unmodified	_VVQGPGGG_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-10|HDAC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	670.3518652431002	1	670.351865	669.344589	1.5699	0.0010524	3.7008	0.0024808	5.2707	0.0035332	670.3541051892486	27.301	0.096519	27.291	27.267	27.363	-0.010126	684	43	1.2116731	0.025270224	1.2101537	247.65422	0	5.1649933						67	5	2	NaN	NaN	NaN	0.84945	1	2488	2488		0	0	1	4165.7	+		29760	8520	17182	17658	23715	23715					-0.003309734336994552
VVRAALLL	8	Unmodified	_VVRAALLL_					0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.5821995302002	1	854.5822	853.574923	1.8598	0.0015893	1.092	0.00093323	2.9518	0.0025226	854.5826728945779	58.941	0.071953	58.941	58.893	58.965	0	339	55	1.4179583	0.032087207	1.4179583	288.5611	0	6.529907						112	4	2	NaN	NaN	NaN	0.84876	1	5446	5446		0.39566	0	1	11704	+		29761	9666	17183	17659	23716	23716					0.14227859899096984
VVRAALLL	8	Unmodified	_VVRAALLL_					0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	854.5821995302002	1	854.5822	853.574923	2.1421	0.0018306	1.2181	0.0010409	3.3601	0.0028715	854.5829919606275	59.085	0.24004	59.085	58.965	59.205	0	333	91	1.4215236	0.053495765	1.4215236	289.28665	0	10.886658						515	11	4	NaN	NaN	NaN	0.84876	1	5447	5447		0.39566	0	1	133970	+		29762	9666	17183	17659	23717	23717					0.14227859899096984
VVRAALLL	8	Unmodified	_VVRAALLL_					0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	854.5821995302002	1	854.5822	853.574923	-0.31793	-0.0002717	3.1137	0.0026609	2.7958	0.0023892	854.5846631840639	59.082	0.16814	59.082	59.01	59.178	-0.00045395	330	115	1.4233059	0.06777573	1.4217864	289.64935	0	13.792725						517	8	4	NaN	NaN	NaN	0.84876	1	5308	5308		0.39566	0	1	157380	+		29763	9666	17183	17659	23718	23718					0.14227859899096984
VVRAALLL	8	Unmodified						0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	854.5822	853.574923	1.8598	0.0015893	1.092	0.00093323	2.9518	0.0025226	854.5826728945779	58.941	0.071953	58.941	58.893	58.965	0	339	55	1.4179583	0.032087207	1.4179583	288.5611		6.529907	0.061344	-0.00082726	-0.0019141	NaN	0.39566	112	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11704	+		29764	9666	17183	17659							0.14227859899096984
VVRAALLL	8	Unmodified						0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	854.5822	853.574923	2.1421	0.0018306	1.2181	0.0010409	3.3601	0.0028715	854.5829919606275	59.085	0.24004	59.085	58.965	59.205	0	333	91	1.4215236	0.053495765	1.4215236	289.28665		10.886658	0.0013485	-0.00093894	-0.00013145	NaN	0.39566	515	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133970	+		29765	9666	17183	17659							0.14227859899096984
VVRAALLL	8	Unmodified						0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	854.5822	853.574923	-0.40326	-0.00034462	2.7887	0.0023832	2.3855	0.0020386	854.5842667302732	58.818	0.071987	58.818	58.77	58.842	-0.00045395	330	55	1.4233059	0.032076955	1.4217864	289.64935		6.527832	-0.061344	0.0006227	0.0019141	NaN	0.39566	84	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7627.2	+		29766	9666	17183	17659							0.14227859899096984
VVRAALLL	8	Unmodified						0	0	0			REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	REV__ENST00000486372.1_1_9:132565440-132566668:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	854.5822	853.574923	-0.31793	-0.0002717	3.1137	0.0026609	2.7958	0.0023892	854.5846631840639	59.082	0.16814	59.082	59.01	59.178	-0.00045395	330	115	1.4233059	0.06777573	1.4217864	289.64935		13.792725	-0.0013485	0.00068106	0.00013145	NaN	0.39566	517	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157380	+		29767	9666	17183	17659							0.14227859899096984
VVRAIVVI	8	Unmodified	_VVRAIVVI_					0	0	0			REV__ENSG00000140481|ENST00000398814|CCDC33	REV__ENSG00000140481|ENST00000398814|CCDC33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	434.80256303050004	2	434.802563	867.590573	1.9982	0.00086881	-0.88715	-0.00038574	1.111	0.00048307	434.8022503859351	25.563	0.072386	25.552	25.528	25.6	-0.011602	1362	31	0.79879075	0.018492699	0.7972713	325.02612	0	7.524658						52	4	2	NaN	NaN	NaN	0.77489	1	5498	5498		12.588	0	1	4975.2	+		29768	9799	17184	17660	23719	23719					0.15148146416129293
VVRAIVVI	8	Unmodified						0	0	0			REV__ENSG00000140481|ENST00000398814|CCDC33	REV__ENSG00000140481|ENST00000398814|CCDC33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	434.802563	867.590573	1.6681	0.0007253	-1.7208	-0.0007482	-0.052672	-2.2902E-05	434.80182833984554	25.515	0.048254	25.515	25.491	25.539	0	1365	34	0.7969414	0.020343125	0.7969414	324.27362		8.277588	-0.018179	-0.00016095	-0.00016497	NaN	12.588	43	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4244.6	+		29769	9799	17184	17660							0.15148146416129293
VVRAIVVI	8	Unmodified						0	0	0			REV__ENSG00000140481|ENST00000398814|CCDC33	REV__ENSG00000140481|ENST00000398814|CCDC33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	434.802563	867.590573	1.9982	0.00086881	-0.88715	-0.00038574	1.111	0.00048307	434.8022503859351	25.563	0.072386	25.552	25.528	25.6	-0.011602	1362	31	0.79879075	0.018492699	0.7972713	325.02612		7.524658	0.018179	0.00056397	0.00016497	NaN	12.588	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4975.2	+		29770	9799	17184	17660							0.15148146416129293
VVRKPPSN	8	Unmodified	_VVRKPPSN_					0	0	0			REV__nc|ENSG00000135148|O14545-2|TRAFD1	REV__nc|ENSG00000135148|O14545-2|TRAFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.7692515294	2	448.769252	895.52395	0.84689	0.00038006	-2.5533	-0.0011459	-1.7064	-0.0007658	448.76717876364336	41.329	0.072166	41.329	41.305	41.377	0	1401	28	0.77473325	0.016666055	0.77473325	315.08405	0	6.778076						35	4	2	NaN	NaN	NaN	0.84692	1	5999	5999		1.4396	0	1	1878.2	+		29771	13121	17185	17661	23720	23720					0.07200910854226095
VVRKPPSN	8	Unmodified						0	0	0			REV__nc|ENSG00000135148|O14545-2|TRAFD1	REV__nc|ENSG00000135148|O14545-2|TRAFD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	448.769252	895.52395	0.84689	0.00038006	-2.5533	-0.0011459	-1.7064	-0.0007658	448.76717876364336	41.329	0.072166	41.329	41.305	41.377	0	1401	28	0.77473325	0.016666055	0.77473325	315.08405		6.778076	0.04517	-0.0015769	-0.00016617	NaN	1.4396	35	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1878.2	+		29772	13121	17185	17661							0.07200910854226095
VVRKPPSN	8	Unmodified						0	0	0			REV__nc|ENSG00000135148|O14545-2|TRAFD1	REV__nc|ENSG00000135148|O14545-2|TRAFD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	448.769252	895.52395	1.2536	0.00056259	0.92575	0.00041545	2.1794	0.00097803	448.77070550112387	41.231	0.048183	41.239	41.191	41.239	0.0074959	1398	31	0.77658504	0.018516839	0.7750656	315.83716		7.530792	-0.04517	0.0015457	0.00016617	NaN	1.4396	45	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3605.1	+		29773	13121	17185	17661							0.07200910854226095
VVSALAYII	9	Unmodified	_VVSALAYII_					0	0	0			REV__tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1	REV__tr|U7SHC0|U7SHC0_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02191PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5764454503002	1	948.576445	947.569169	1.7661	0.0016753	0.27372	0.00025965	2.0398	0.0019349	948.5763420833	34.372	0.19296	34.372	34.348	34.541	0	189	121	1.5068626	0.07098758	1.5068626	306.17093	0	14.423584						473	9	4	NaN	NaN	NaN	0.03623	1	7036	7036		52.758	0	1	95329	+		29774	13391	17186	17662	23721	23721					0.09328716596769482
VVSDAIFEL	9	Unmodified	_VVSDAIFEL_					0	0	0		ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827|THRA	ENSG00000126351|ENST00000450525|THRA	ENSG00000126351|ENST00000450525|THRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5298891882002	1	992.529889	991.522613	1.2316	0.0012224	-1.6717	-0.0016592	-0.44018	-0.00043689	992.5286352407066	31.284	0.14481	31.284	31.259	31.404	0	219	76	1.4891195	0.044378996	1.4891195	302.3736	0	9.011383						200	7	3	NaN	NaN	NaN	0.028349	1	8273	8273		61.271	14.135	1	34831			29775	2500	17187	17663	23722	23722					0.026512319748235313
VVSDAIFEL	9	Unmodified	_VVSDAIFEL_					0	0	0		ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827|THRA	ENSG00000126351|ENST00000450525|THRA	ENSG00000126351|ENST00000450525|THRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5298891882002	1	992.529889	991.522613	1.2762	0.0012667	-6.1878	-0.0061416	-4.9116	-0.004875	992.5244950602215	31.258	0.19306	31.253	31.181	31.374	-0.0050716	216	94	1.4908947	0.055018306	1.4893752	302.73407	0	11.171753						381	9	3	NaN	NaN	NaN	0.043119	1	8108	8108		49.833	20.235	1	57357			29776	2500	17187	17663	23723	23723					0.026512319748235313
VVSDPRPW	8	Unmodified	_VVSDPRPW_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.2534342897	2	478.253434	954.492316	1.1005	0.0005263	-10.502	-0.0050226	-9.4016	-0.0044963	478.24900496630613	20.646	0.072323	20.632	20.584	20.656	-0.014086	1359	58	0.8006399	0.0351305	0.7991205	325.3164	0	14.274231						152	4	3	NaN	NaN	NaN	0.67593	1	7046	7046		20.555	1.4371	1	18847	+		29777	11111	17188	17664	23724	23724					0.01324918100283412
VVSDPRPW	8	Unmodified						0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	478.253434	954.492316	1.2422	0.00059408	-9.3119	-0.0044534	-8.0697	-0.0038593	478.24951912524773	20.622	0.072229	20.622	20.573	20.646	0	1359	64	0.8006399	0.038828433	0.8006399	325.3164		15.776794	-0.005122	0.00080386	0.00075972	NaN	20.555	134	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15580	+		29778	11111	17188	17664							0.01324918100283412
VVSDPRPW	8	Unmodified						0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	478.253434	954.492316	1.1005	0.0005263	-10.502	-0.0050226	-9.4016	-0.0044963	478.24900496630613	20.646	0.072323	20.632	20.584	20.656	-0.014086	1359	58	0.8006399	0.0351305	0.7991205	325.3164		14.274231	0.005122	-0.00033458	-0.00075972	NaN	20.555	152	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18847	+		29779	11111	17188	17664							0.01324918100283412
VVSETPHP	8	Unmodified	_VVSETPHP_					0	0	0		ENST00000376387.4_1_13:100153672-100153861:+|nuORF	ENST00000376387.4_1_13:100153672-100153861:+|nuORF	ENST00000376387.4_1_13:100153672-100153861:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.4414085319	1	865.441409	864.434132	1.5998	0.0013845	1.477	0.0012783	3.0768	0.0026628	865.4431194675772	20.742	0.02413	20.742	20.718	20.742	0	399	76	1.382264	0.04464388	1.382264	281.24112	0	9.083435						67	2	2	NaN	NaN	NaN	0.77489	1	5582	5582		12.588	0	1	4280.8			29780	6699	17189	17665	23725	23725					-0.0035076354499778972
VVSLQSFDQM	10	Unmodified	_VVSLQSFDQM_					0	0	0			REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	REV__tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.19011309863333	3	385.190113	1152.54851	1.0931	0.00042104	6.8083	0.0026225	7.9014	0.0030435	385.193092088353	12.774	0.14403	12.765	12.717	12.861	-0.00947	1452	43	0.74322224	0.025977015	0.7417028	451.86798	0	15.79364						208	7	4	NaN	NaN	NaN	0.64611	1	14386	14386		6.8076	1.5229	1	29375	+		29781	13389	17190	17666	23726	23726					-0.021662418452024212
VVSQVTYEI	9	Unmodified	_VVSQVTYEI_					0	0	0		nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5513529118	1	1037.55135	1036.54408	1.0678	0.0011079	0.45863	0.00047585	1.5264	0.0015838	1037.5528552481005	26.794	0.096535	26.783	26.759	26.856	-0.010645	135	76	1.5387528	0.044261456	1.5372335	312.26575	0	8.982178						203	5	3	NaN	NaN	NaN	0.030696	1	9863	9863		58.2	7.3688	1	30620			29782	2244	17191	17667	23727	23727					0.027266170035318282
VVSSKIQA	8	Unmodified	_VVSSKIQA_					0	0	0		FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	831.4934441024	1	831.493444	830.486168	0.18988	0.00015788	-2.9825	-0.0024799	-2.7926	-0.002322	831.4914827806203	58.266	0.023949	58.266	58.266	58.29	-0.00048447	447	40	1.3536539	0.023264408	1.3521345	275.59625	0	4.7364807						39	2	2	NaN	NaN	NaN	0.84887	1	5027	5027		0.32989	0	1	3390.6			29783	5562	17192	17668	23728	23728					0.06414399868742748
VVSTHEQVL	9	Unmodified	_VVSTHEQVL_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;ENST00000417510.5_1_17:16721458-16722199:-|nuORF	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.27710635125	2	506.277106	1010.53966	1.7697	0.00089596	-3.1734	-0.0016066	-1.4037	-0.00071068	506.2747764856695	16.014	0.11998	16.014	15.99	16.11	0	1281	40	0.84864825	0.023971736	0.84864825	344.55148	0	9.732513						92	6	2	NaN	NaN	NaN	0.19268	1	9002	9002		25.801	2.6834	1	10151		+	29784	187	17193	17669	23729	23729					0.034811525806162535
VVSTHEQVL	9	Unmodified						0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENST00000425692.6_1_17:16721458-16722262:-|nuORF;ENST00000417510.5_1_17:16721458-16722199:-|nuORF	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.277106	1010.53966	2.0164	0.0010208	-3.2227	-0.0016316	-1.2063	-0.00061075	506.27568717290325	16.035	0.11979	16.023	15.999	16.118	-0.012611	1284	34	0.8468043	0.020283759	0.8452849	343.80283		8.235199	0.0043469	-1.5518E-05	-0.0016817	NaN	25.801	108	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9287.7		+	29785	187	17193	17669							0.034811525806162535
VVSVLHHL	8	Unmodified	_VVSVLHHL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	903.541062997	1	903.541063	902.533787	1.9583	0.0017694	-9.6326	-0.0087035	-7.6743	-0.006934	903.5317251574979	55.845	0.023991	55.845	55.845	55.869	0	342	46	1.4161754	0.02674079	1.4161754	287.95038	0	5.437195						49	2	2	NaN	NaN	NaN	0.84651	1	6135	6135		1.6704	0	1	4435.7			29786	1780	17194	17670	23730	23730					0.07862098859607158
VVSVLPYS	8	Unmodified	_VVSVLPYS_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.24728627929994	2	432.247286	862.48002	0.63049	0.00027253	-2.9641	-0.0012812	-2.3336	-0.0010087	432.24636107251376	32.344	0.14481	32.341	32.292	32.437	-0.0037613	1416	40	0.76547134	0.024086237	0.7639519	311.49725	0	9.801514						111	7	3	NaN	NaN	NaN	0.82332	1	5429	5429		6.0903	0	1	10132	+		29787	9583	17195	17671	23731	23731					0.043278816372207984
VVSVLPYS	8	Unmodified						0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.247286	862.48002	0.63049	0.00027253	-2.9641	-0.0012812	-2.3336	-0.0010087	432.24636107251376	32.344	0.14481	32.341	32.292	32.437	-0.0037613	1416	40	0.76547134	0.024086237	0.7639519	311.49725		9.801514	-0.0024397	-1.2333E-05	-0.0016861	NaN	6.0903	111	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10132	+		29788	9583	17195	17671							0.043278816372207984
VVTACLRL	8	Unmodified	_VVTACLRL_					0	0	0			REV__TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	REV__TMX3|p.D120Mfs*14|1|0.3|ENSG00000166479|chr18:68700440-68700440|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	874.5178847138999	1	874.517885	873.510608	1.7692	0.0015472	-2.3875	-0.0020879	-0.61834	-0.00054075	874.5157485567684	25.78	0.1931	25.769	25.696	25.89	-0.0116	1245	76	0.87076044	0.046034753	0.869241	177.1397	0	9.364883						338	9	3	NaN	NaN	NaN	0.84945	1	5591	5591		0	0	1	47608	+		29789	10435	17196	17672	23732	23732					0.06879336750614584
VVTGAVVL	8	Unmodified	_VVTGAVVL_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	757.4818167836	1	757.481817	756.47454	1.3147	0.00099583	0.69167	0.00052393	2.0063	0.0015198	757.4822621437346	26.964	0.072361	26.964	26.94	27.012	0	537	46	1.2998781	0.026932359	1.2998781	265.06885	0	5.4920044						77	4	2	NaN	NaN	NaN	0.40747	1	4179	4179		36.036	7.3698	1	7067	+		29790	10772	17197	17673	23733	23733					0.08656202845418193
VVTGAVVL	8	Unmodified	_VVTGAVVL_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	757.4818167836	1	757.481817	756.47454	1.4633	0.0011084	0.8223	0.00062288	2.2856	0.0017313	757.4815432229252	26.987	0.1207	26.977	26.953	27.074	-0.010126	534	55	1.3016734	0.03232062	1.300154	265.43494	0	6.5907593						94	6	2	NaN	NaN	NaN	0.54545	1	4101	4101		28.667	0	1	8645.6	+		29791	10772	17197	17673	23734	23734					0.08656202845418193
VVTGAVVL	8	Unmodified						0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	757.481817	756.47454	1.3147	0.00099583	0.69167	0.00052393	2.0063	0.0015198	757.4822621437346	26.964	0.072361	26.964	26.94	27.012	0	537	46	1.2998781	0.026932359	1.2998781	265.06885		5.4920044	-0.0066031	-4.5943E-05	-0.00013793	NaN	36.036	77	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7067	+		29792	10772	17197	17673							0.08656202845418193
VVTGAVVL	8	Unmodified						0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	757.481817	756.47454	1.4633	0.0011084	0.8223	0.00062288	2.2856	0.0017313	757.4815432229252	26.987	0.1207	26.977	26.953	27.074	-0.010126	534	55	1.3016734	0.03232062	1.300154	265.43494		6.5907593	0.0066031	5.3007E-05	0.00013793	NaN	36.036	94	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8645.6	+		29793	10772	17197	17673							0.08656202845418193
VVTLVLVIL	9	Unmodified	_VVTLVLVIL_					0	0	0		ENSG00000179615|ENST00000641114|OR2AP1;ENSG00000188324|ENST00000358433|OR6C6	ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	968.6754312134	1	968.675431	967.668155	1.8613	0.001803	-2.7179	-0.0026328	-0.85665	-0.00082982	968.672701860736	57.957	0.048027	57.957	57.933	57.981	0	165	64	1.5210435	0.037207246	1.5210435	308.96033	0	7.557678						101	3	3	NaN	NaN	NaN	0.6907	1	7551	7551		0	0	1	16950			29794	5160	17198	17674	23735	23735					0.1830273956164774
VVTPLPAA	8	Unmodified	_VVTPLPAA_					0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4661667193999	1	767.466167	766.45889	1.8408	0.0014127	-4.2722	-0.0032788	-2.4315	-0.0018661	767.4623372976971	57.981	0.048038	57.981	57.957	58.005	0	585	40	1.2711272	0.02337873	1.2711272	259.1459	0	4.766266						52	3	2	NaN	NaN	NaN	0.84945	1	4311	4311		0	0	1	4277	+		29795	9923	17199	17675	23736	23736					0.06631916328353782
VVTPLPAA	8	Unmodified	_VVTPLPAA_					0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4661667193999	1	767.466167	766.45889	1.6293	0.0012505	-3.9264	-0.0030134	-2.2971	-0.0017629	767.4640817496086	30.632	0.048294	30.632	30.608	30.656	0	588	31	1.2693287	0.017986536	1.2693287	258.77924	0	3.6669617						44	3	2	NaN	NaN	NaN	0.84945	1	4312	4312		0	0	1	2036.2	+		29796	9923	17199	17675	23737	23737					0.06631916328353782
VVTPLPAA	8	Unmodified	_VVTPLPAA_					0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4661667193999	1	767.466167	766.45889	1.7416	0.0013366	-3.6006	-0.0027633	-1.859	-0.0014267	767.4643512223951	55.292	0.047993	55.292	55.268	55.316	0	582	49	1.2729256	0.028772473	1.2729256	259.51254	0	5.8658752						72	3	2	NaN	NaN	NaN	0.84945	1	4313	4313		0	0	1	9388.5	+		29797	9923	17199	17675	23738	23738					0.06631916328353782
VVTPLPAA	8	Unmodified	_VVTPLPAA_					0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	767.4661667193999	1	767.466167	766.45889	2.099	0.0016109	-3.4531	-0.0026502	-1.3541	-0.0010392	767.4635302604198	29.98	0.19312	29.98	29.932	30.125	0	576	97	1.2765218	0.057563186	1.2765218	260.24567	0	11.735474						324	9	4	NaN	NaN	NaN	0.84945	1	4314	4314		0	0	1	95871	+		29798	9923	17199	17675	23739	23739					0.06631916328353782
VVTPLPAA	8	Unmodified	_VVTPLPAA_					0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	767.4661667193999	1	767.466167	766.45889	0.14154	0.00010863	-4.0454	-0.0031047	-3.9038	-0.0029961	767.4634265477641	57.979	0.048031	57.978	57.954	58.002	-0.00051117	582	40	1.2729256	0.023373842	1.2714062	259.51254	0	4.765259						53	3	2	NaN	NaN	NaN	0.84945	1	4239	4239		0	0	1	5403.5	+		29799	9923	17199	17675	23740	23740					0.06631916328353782
VVTPLPAA	8	Unmodified						0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	767.466167	766.45889	1.8408	0.0014127	-4.2722	-0.0032788	-2.4315	-0.0018661	767.4623372976971	57.981	0.048038	57.981	57.957	58.005	0	585	40	1.2711272	0.02337873	1.2711272	259.1459		4.766266	0.0013697	-9.3909E-05	-0.00013947	NaN	0	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4277	+		29800	9923	17199	17675							0.06631916328353782
VVTPLPAA	8	Unmodified						0	0	0			REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	767.466167	766.45889	0.14154	0.00010863	-4.0454	-0.0031047	-3.9038	-0.0029961	767.4634265477641	57.979	0.048031	57.978	57.954	58.002	-0.00051117	582	40	1.2729256	0.023373842	1.2714062	259.51254		4.765259	-0.0013697	8.0197E-05	0.00013947	NaN	0	53	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5403.5	+		29801	9923	17199	17675							0.06631916328353782
VVTSGPGG	8	Unmodified	_VVTSGPGG_					0	0	0		ENSG00000125686|ENST00000300651|MED1;MED1|p.P1324Q|1|0.3|ENSG00000125686|chr17:39408250-39408250|G/T|missense_variant	ENSG00000125686|ENST00000300651|MED1	ENSG00000125686|ENST00000300651|MED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	673.3515308921002	1	673.351531	672.344254	1.3248	0.00089209	5.6611	0.0038119	6.9859	0.004704	673.3552350786141	27.664	0.21715	27.664	27.591	27.808	0	1290	43	0.84311575	0.025819898	0.84311575	172.30927	0	5.2768707						185	10	2	NaN	NaN	NaN	0.84945	1	2651	2651		0	0	1	27592			29802	2467	17200	17676	23741	23741					-0.0050239315355611325
VVTTSENV	8	Unmodified	_VVTTSENV_					0	0	0		ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.72163263479996	2	424.721633	847.428712	1.5967	0.00067815	2.4835	0.0010548	4.0802	0.0017329	424.7236158368674	45.694	0.096184	45.694	45.67	45.766	0	1434	28	0.75435036	0.016685963	0.75435036	307.0571	0	6.791992						42	5	2	NaN	NaN	NaN	0.81251	1	5357	5357		7.5404	2.6306	1	2306.2			29803	6007	17201	17677	23742	23742					-0.0011048712748333855
VVVAKPKG	8	Unmodified	_VVVAKPKG_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	797.5243503003002	1	797.52435	796.517074	2.0215	0.0016122	-1.1807	-0.00094165	0.84078	0.00067054	797.5233107157072	58.029	0.096073	58.029	58.005	58.101	0	441	70	1.3572328	0.041159987	1.3572328	276.5166	0	8.385742						165	5	4	NaN	NaN	NaN	0.84945	1	4715	4715		0	0	1	37405			29804	4669	17202	17678	23743	23743					0.11067597973669763
VVVAKPKG	8	Unmodified	_VVVAKPKG_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	797.5243503003002	1	797.52435	796.517074	-0.19505	-0.00015556	1.1606	0.00092561	0.96555	0.00077005	797.5250626054578	58.027	0.095997	58.026	58.002	58.098	-0.00050735	438	67	1.359022	0.03936422	1.3575026	276.88113	0	8.019897						181	5	4	NaN	NaN	NaN	0.84945	1	4626	4626		0	0	1	36733			29805	4669	17202	17678	23744	23744					0.11067597973669763
VVVAVAVL	8	Unmodified	_VVVAVAVL_					0	0	0		ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	769.5182022899002	1	769.518202	768.510926	1.0451	0.00080421	-0.15628	-0.00012026	0.88881	0.00068395	769.5183558813668	31.501	0.16895	31.501	31.452	31.621	0	513	79	1.3142352	0.04665041	1.3142352	267.92175	0	9.510223						272	8	4	NaN	NaN	NaN	0.60626	1	4344	4344		24.901	0	1	57892			29806	4695	17203	17679	23745	23745					0.11741079742137117
VVVAVAVL	8	Unmodified	_VVVAVAVL_					0	0	0		ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	769.5182022899002	1	769.518202	768.510926	0.99069	0.00076236	0.049984	3.8463E-05	1.0407	0.00080082	769.5181154493682	31.5	0.12067	31.495	31.447	31.568	-0.0044174	510	94	1.316029	0.055624604	1.3145095	268.2874	0	11.339722						262	6	4	NaN	NaN	NaN	0.60626	1	4268	4268		24.901	0	1	57882			29807	4695	17203	17679	23746	23746					0.11741079742137117
VVVAVVVV	8	Unmodified	_VVVAVVVV_					0	0	0		ENST00000373504.10_1_X:72783056-72783248:+|nuORF	REV__ENST00000373504.10_1_X:72783056-72783248:+|nuORF	REV__ENST00000373504.10_1_X:72783056-72783248:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	783.5338523541002	1	783.533852	782.526576	1.5979	0.001252	-0.79421	-0.00062229	0.80374	0.00062976	783.5332242502899	29.039	0.096579	29.039	28.991	29.087	0	498	61	1.3232021	0.035865784	1.3232021	269.665	0	7.3093567						105	5	2	NaN	NaN	NaN	0.71635	1	4538	4538		18.034	0	1	12935			29808	6677	17204	17680	23747	23747					0.12661366259192164
VVVGHVVTL	9	Unmodified	_VVVGHVVTL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.7896526205	2	461.789653	921.564752	1.1599	0.00053565	-1.8119	-0.0008367	-0.65192	-0.00030105	461.78941792798366	21.513	0.096466	21.499	21.475	21.571	-0.014006	1332	40	0.8172735	0.024015844	0.81575406	332.24332	0	9.763092						74	5	2	NaN	NaN	NaN	0.42773	1	6320	6320		12.588	5.0475	1	7368.9			29809	7990	17205	17681	23748	23748					0.10083252173853907
VVVGHVVTL	9	Unmodified						0	0	0		nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	461.789653	921.564752	0.98028	0.00045268	-1.3948	-0.0006441	-0.41451	-0.00019141	461.789198555007	21.488	0.096466	21.488	21.464	21.561	0	1335	40	0.8154261	0.024015844	0.8154261	331.4923		9.763092	-0.0050887	0.00019274	-0.00016397	NaN	12.588	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7164.3			29810	7990	17205	17681							0.10083252173853907
VVVGKGRG	8	Unmodified	_VVVGKGRG_					0	0	0		nc|ENSG00000167483|Q86XR2|NIBAN3;ENST00000597887.5_1_19:17638077-17643088:+|nuORF;nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	nc|ENSG00000167483|Q86XR2|NIBAN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4835481181002	1	771.483548	770.476272	1.8573	0.0014329	4.6918	0.0036197	6.5491	0.0050525	771.4871174014042	57.981	0.048027	57.981	57.933	57.981	0	513	46	1.3142352	0.026909351	1.3142352	267.90973	0	5.4855347						64	3	2	NaN	NaN	NaN	0.84945	1	4368	4368		0	0	1	4482.2			29811	7975	17206	17682	23749	23749					0.08185256654053319
VVVLVSSY	8	Unmodified	_VVVLVSSY_					0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562001	1	865.502946	864.49567	1.6083	0.001392	-1.5676	-0.0013568	0.040649	3.5182E-05	865.5005782778355	36.543	0.12055	36.543	36.519	36.639	0	501	49	1.3214091	0.028689504	1.3214091	268.85904	0	5.837311						106	6	2	NaN	NaN	NaN	0.79379	1	5596	5596		10.052	0	1	7167.5	+		29812	10092	17207	17683	23750	23750					0.05800168154280527
VVVLVSSY	8	Unmodified	_VVVLVSSY_					0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562001	1	865.502946	864.49567	2.0688	0.0017906	-0.61153	-0.00052928	1.4573	0.0012613	865.5022926170058	35.53	0.53045	35.53	35.434	35.964	0	501	787	1.3214091	0.47527403	1.3214091	268.85904	0	96.70111						3410	23	6	NaN	NaN	NaN	0.82332	1	5603	5603		6.0903	0	1	4282900	+		29813	10092	17207	17683	23751	23751					0.05800168154280527
VVVLVSSY	8	Unmodified	_VVVLVSSY_					0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562001	1	865.502946	864.49567	1.9012	0.0016455	-0.69711	-0.00060335	1.2041	0.0010422	865.5024635284022	35.529	0.60279	35.529	35.457	36.06	0.00053024	498	421	1.3232021	0.2523005	1.3216827	269.22385	0	51.33403						3024	26	6	NaN	NaN	NaN	0.76633	1	5462	5462		13.737	3.6855	1	4309300	+		29814	10092	17207	17683	23752	23752					0.05800168154280527
VVVLVSSY	8	Unmodified						0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	865.502946	864.49567	2.0688	0.0017906	-0.61153	-0.00052928	1.4573	0.0012613	865.5022926170058	35.53	0.53045	35.53	35.434	35.964	0	501	787	1.3214091	0.47527403	1.3214091	268.85904		96.70111	0.00049464	3.8774E-05	-0.00013678	NaN	13.737	3410	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4282900	+		29815	10092	17207	17683							0.05800168154280527
VVVLVSSY	8	Unmodified						0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	865.502946	864.49567	1.6083	0.001392	-1.5676	-0.0013568	0.040649	3.5182E-05	865.5005782778355	36.543	0.12055	36.543	36.519	36.639	0	501	49	1.3214091	0.028689504	1.3214091	268.85904		5.837311	-0.011908	-0.00080909	-0.0010332	NaN	10.052	106	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7167.5	+		29816	10092	17207	17683							0.05800168154280527
VVVLVSSY	8	Unmodified						0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	865.502946	864.49567	1.9012	0.0016455	-0.69711	-0.00060335	1.2041	0.0010422	865.5024635284022	35.529	0.60279	35.529	35.457	36.06	0.00053024	498	421	1.3232021	0.2523005	1.3216827	269.22385		51.33403	-0.00049464	-3.529E-05	0.00013678	NaN	13.737	3024	26	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4309300	+		29817	10092	17207	17683							0.05800168154280527
VVVLVSSY	8	Unmodified						0	0	0			REV__OBSCN-KRT17|1|fusion	REV__OBSCN-KRT17|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	865.502946	864.49567	1.525	0.0013199	0.2043	0.00017682	1.7293	0.0014967	865.5023755053674	36.565	0.072372	36.567	36.519	36.591	0.0016747	495	49	1.3249949	0.028686523	1.3234755	269.58862		5.83667	0.011908	0.00072454	0.0010332	NaN	10.052	95	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7188.4	+		29818	10092	17207	17683							0.05800168154280527
VVVPAGGS	8	Unmodified	_VVVPAGGS_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	343.19759643250006	2	343.197596	684.38064	1.8203	0.00062471	1.2853	0.0004411	3.1055	0.0010658	343.19803393985717	16.182	0.095959	16.182	16.11	16.206	0	1458	70	0.7395112	0.042655706	0.7395112	302.1561	0	17.42865						135	5	2	NaN	NaN	NaN	0.84945	1	2934	2934		0	0	1	14056			29819	370	17208	17684	23753	23753					0.025824837431514425
VVVPAGGS	8	Unmodified	_VVVPAGGS_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	343.19759643250006	2	343.197596	684.38064	2.3142	0.00079423	1.1122	0.00038169	3.4264	0.0011759	343.1978876280249	16.179	0.14388	16.166	16.094	16.238	-0.012993	1458	70	0.7395112	0.042651057	0.73799175	302.1561	0	17.426758						181	7	2	NaN	NaN	NaN	0.84945	1	2854	2854		0	0	1	16204			29820	370	17208	17684	23754	23754					0.025824837431514425
VVVVAAAA	8	Unmodified	_VVVVAAAA_					0	0	0			REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF	REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	350.2236142177499	2	350.223614	698.432676	2.0051	0.00070224	-9.0452	-0.0031679	-7.0401	-0.0024656	350.22035534635893	53.242	0.048088	53.242	53.218	53.266	0	1437	34	0.7524962	0.020396113	0.7524962	307.3407	0	8.330353						33	3	2	NaN	NaN	NaN	0.84945	1	3203	3203		0	0	1	2520.9			29821	11833	17209	17685	23755	23755					0.07139647156884621
VVVVAAAIC	9	Unmodified	_VVVVAAAIC_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4960866392998	1	844.496087	843.48881	1.7455	0.001474	-3.299	-0.002786	-1.5535	-0.0013119	844.4918622743015	30.56	0.048256	30.56	30.56	30.608	0	1284	31	0.8468043	0.01844281	0.8468043	172.36128	0	3.753891						29	3	2	NaN	NaN	NaN	0.6907	1	5319	5319		0	0	1	1777.3	+		29822	11268	17210	17686	23756	23756					0.060805320020335785
VVVVAAAIC	9	Unmodified	_VVVVAAAIC_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	844.4960866392998	1	844.496087	843.48881	0.67247	0.0005679	-2.6435	-0.0022324	-1.971	-0.0016645	844.4936859539815	30.462	0.12065	30.456	30.432	30.553	-0.0057545	1281	46	0.84864825	0.027656734	0.8471288	172.7366	0	5.6293335						133	6	3	NaN	NaN	NaN	0.6907	1	5185	5185		0	0	1	21139	+		29823	11268	17210	17686	23757	23757					0.060805320020335785
VVVVAAAIC	9	Unmodified						0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	844.496087	843.48881	1.7455	0.001474	-3.299	-0.002786	-1.5535	-0.0013119	844.4918622743015	30.56	0.048256	30.56	30.56	30.608	0	1284	31	0.8468043	0.01844281	0.8468043	172.36128		3.753891	0.051646	-0.00047074	-0.00016227	NaN	0	29	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1777.3	+		29824	11268	17210	17686							0.060805320020335785
VVVVAAAIC	9	Unmodified						0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	844.496087	843.48881	0.67247	0.0005679	-2.6435	-0.0022324	-1.971	-0.0016645	844.4936859539815	30.462	0.12065	30.456	30.432	30.553	-0.0057545	1281	46	0.84864825	0.027656734	0.8471288	172.7366		5.6293335	-0.051646	8.2794E-05	0.00016227	NaN	0	133	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21139	+		29825	11268	17210	17686							0.060805320020335785
VVWRPRRRK	9	Unmodified	_VVWRPRRRK_					0	0	0		ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1252.7861529209	1	1252.78615	1251.77888	1.9886	0.0024913	-2.3269	-0.0029151	-0.33825	-0.00042375	1252.7844500393364	41.377	0.048092	41.377	41.329	41.377	0	72	73	1.5758814	0.04238987	1.5758814	319.07736	0	8.582916						179	3	4	NaN	NaN	NaN	0.68801	1	17826	17826		0.23014	0	1	36933			29826	7416	17211	17687	23758	23758					0.16305817113106968
VVWRPRRRK	9	Unmodified						0	0	0		ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	ENST00000524481.5_1_6:128321419-128841710:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1252.78615	1251.77888	1.1083	0.0013885	-1.6934	-0.0021215	-0.58511	-0.00073301	1252.7848195205174	41.568	0.096172	41.577	41.553	41.649	0.0082588	69	67	1.5776473	0.038853288	1.5761279	319.43494		7.866852	0.099664	0.00033007	0.00012326	NaN	0.23014	178	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46139			29827	7416	17211	17687							0.16305817113106968
VWAFGVLIF	9	Unmodified	_VWAFGVLIF_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.3023958550001	2	526.302396	1050.59024	1.8407	0.00096876	-7.7334	-0.0040701	-5.8927	-0.0031013	526.2986414721835	26.384	0.096527	26.384	26.336	26.432	0	1305	31	0.83389086	0.018456757	0.83389086	338.38657	0	7.489624						59	5	2	NaN	NaN	NaN	0.65388	1	10664	10664		3.1533	1.2287	1	4813.3			29828	5546	17212	17688	23759	23759					0.06696726696281985
VWAFGVLIF	9	Unmodified						0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	526.302396	1050.59024	1.8962	0.00099797	-9.3432	-0.0049174	-7.447	-0.0039194	526.297628597911	26.384	0.048269	26.373	26.349	26.397	-0.011137	1296	28	0.8394264	0.016608357	0.83790696	340.63284		6.739563	-0.0057035	-0.00088953	0.002008	NaN	3.1533	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4013.9			29829	5546	17212	17688							0.06696726696281985
VWAGTAATC	9	Unmodified	_VWAGTAATC_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4029145355998	1	879.402915	878.395638	1.7546	0.001543	-7.3078	-0.0064265	-5.5532	-0.0048835	879.3983048524542	53.266	0.12011	53.266	53.194	53.314	0	342	106	1.4161754	0.062455058	1.4161754	288.06918	0	12.704193						232	6	3	NaN	NaN	NaN	0.62619	1	5776	5776		4.4131	0	1	16618			29830	3507	17213	17689	23760	23760					-0.048423924511894256
VWCGHSCFRY	10	Unmodified	_VWCGHSCFRY_					0	0	0		ENST00000599232.1_1_19:58904459-58904744:+|nuORF	ENST00000599232.1_1_19:58904459-58904744:+|nuORF	ENST00000599232.1_1_19:58904459-58904744:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	419.84791579663334	3	419.847916	1256.52192	1.1149	0.0004681	8.407	0.0035297	9.522	0.0039978	419.8521753413968	28.58	0.096498	28.572	28.547	28.644	-0.0083485	1491	46	0.7190863	0.027864277	0.71756685	436.76642	0	16.9245						69	5	2	NaN	NaN	NaN	0.77318	1	17153	17153		0.81135	0	1	6484.1			29831	7765	17214	17690	23761	23761					-0.09608209217526564
VWDESASF	8	Unmodified	_VWDESASF_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.4046886746	1	940.404689	939.397412	1.5524	0.0014599	1.8333	0.001724	3.3857	0.0031839	940.4063322080209	23.803	0.072184	23.803	23.778	23.851	0	321	49	1.4286518	0.028509855	1.4286518	290.3159	0	5.7934875						71	4	2	NaN	NaN	NaN	0.45125	1	6799	6799		33.698	11.572	1	5935.5			29832	3229	17215	17691	23762	23762					-0.0747106016157204
VWDESASF	8	Unmodified	_VWDESASF_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.4046886746	1	940.404689	939.397412	2.3158	0.0021778	-1.7585	-0.0016537	0.55726	0.00052405	940.4028226073618	23.802	0.12059	23.789	23.765	23.886	-0.013048	324	43	1.42687	0.024948835	1.4253505	289.95383	0	5.0698547						83	6	2	NaN	NaN	NaN	0.77489	1	6661	6661		12.588	2.5363	1	5986.7			29833	3229	17215	17691	23763	23763					-0.0747106016157204
VWDEVSGQW	9	Unmodified	_VWDEVSGQW_					0	0	0		ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.4949006653999	1	1105.4949	1104.48762	2.3059	0.0025492	-1.9736	-0.0021819	0.33228	0.00036733	1105.4930547736515	26.191	0.072397	26.18	26.156	26.228	-0.011137	189	52	1.5068626	0.030142546	1.5053432	305.547	0	6.1119995						80	4	2	NaN	NaN	NaN	0.12866	1	12673	12673		31.675	15.091	1	5058.5			29834	5139	17216	17692	23764	23764					-0.06044010833147695
VWDEVSGQW	9	Unmodified						0	0	0		ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1105.4949	1104.48762	2.326	0.0025714	-0.61952	-0.00068488	1.7065	0.0018865	1105.4946296232451	26.191	0.048271	26.191	26.167	26.215	0	189	55	1.5068626	0.031913996	1.5068626	305.547		6.4711914	0.005674	0.00085209	0.00075972	NaN	31.675	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3249.3			29835	5139	17216	17692							-0.06044010833147695
VWDIVGTEL	9	Unmodified	_VWDIVGTEL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5407882255	1	1031.54079	1030.53351	0.94766	0.00097755	-2.0561	-0.0021209	-1.1084	-0.0011434	1031.5396320462116	31.235	0.096497	31.235	31.211	31.308	0	162	91	1.5228153	0.053156137	1.5228153	309.05518	0	10.787994						257	5	3	NaN	NaN	NaN	0.036546	1	9801	9801		52.624	28.774	1	41053			29836	2718	17217	17693	23765	23765					0.01946634349087617
VWDVGSHF	8	Unmodified	_VWDVGSHF_					0	0	0		nc|ENSG00000228696|Q8IVW1-2|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;ENSG00000185829|ENST00000336125|ARL17A;nc|ENSG00000228696|Q8IVW1-4|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.72450967475004	2	473.72451	945.434466	0.51104	0.00024209	-1.0827	-0.00051291	-0.57169	-0.00027082	473.72442268932656	22.211	0.072369	22.197	22.173	22.246	-0.013731	1356	40	0.8024889	0.024034083	0.8009695	326.112	0	9.766846						88	4	3	NaN	NaN	NaN	0.54545	1	6813	6813		28.667	9.5482	1	8380.4			29837	5439	17218	17694	23766	23766					-0.040433438251398
VWEETIILL	9	Unmodified	_VWEETIILL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.3209825386501	2	558.320983	1114.62741	0.88353	0.00049329	-2.6605	-0.0014854	-1.777	-0.00099213	558.3191523554079	35.746	0.072266	35.746	35.722	35.794	0.00053024	1191	58	0.90387505	0.034929693	0.9023556	366.51282	0	14.163666						146	4	3	NaN	NaN	NaN	0.53206	1	13085	13085		8.2903	0.70269	1	13086			29838	523	17219	17695	23767	23767					0.0746835345139516
VWFCCNYT	8	Unmodified	_VWFCCNYT_					0	0	0			REV__ENST00000531999.5_1_11:834538-836303:+|nuORF	REV__ENST00000531999.5_1_11:834538-836303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.2067809103	2	518.206781	1034.39901	1.5912	0.00082456	1.4335	0.00074285	3.0247	0.0015674	518.7087428703704	29.256	0.19303	29.256	29.208	29.401	0	1320	61	0.824661	0.0369215	0.824661	334.70886	0	14.985504						433	9	6	NaN	NaN	NaN	0.78264	1	9949	9949		11.548	0	1	57707	+		29839	12645	17220	17696	23768	23768					-0.11681465668812052
VWFGTCDFHVM	11	Unmodified	_VWFGTCDFHVM_					0	0	0			REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.29137620695	2	671.291376	1340.5682	1.0677	0.00071677	-3.1644	-0.0021242	-2.0966	-0.0014074	671.2898932438194	32.08	0.16893	32.08	32.032	32.201	0	1086	85	0.9680805	0.051306248	0.9680805	391.73834	0	20.761322						262	8	2	NaN	NaN	NaN	0.63005	1	19412	19412		12.049	0.30984	1	29703	+		29840	9790	17221	17697	23769	23769					-0.08846189106134261
VWFGTCDFHVM	11	Unmodified						0	0	0			REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	REV__ENST00000559816.1_1_15:50534459-50545113:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	671.291376	1340.5682	1.0677	0.00071677	-3.1644	-0.0021242	-2.0966	-0.0014074	671.2898932438194	32.08	0.16893	32.08	32.032	32.201	0	1086	85	0.9680805	0.051306248	0.9680805	391.73834		20.761322	0.14753	0.0014591	0.0080868	NaN	12.049	262	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29703	+		29841	9790	17221	17697							-0.08846189106134261
VWFNIGSVDTF	11	Unmodified	_VWFNIGSVDTF_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.8165956525	2	642.816596	1283.61864	1.8715	0.001203	-3.4176	-0.0021969	-1.5461	-0.00099388	642.8140138334525	34.396	0.21708	34.396	34.348	34.565	0	1158	73	0.92408	0.044038475	0.92408	374.1026	0	17.82846						346	10	4	NaN	NaN	NaN	0.026761	1	18491	18491		58.398	42.576	1	59887			29842	3317	17222	17698	23770	23770					-0.01182620185113592
VWFNIGSVDTF	11	Unmodified	_VWFNIGSVDTF_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.8165956525	2	642.816596	1283.61864	1.825	0.0011731	-2.0497	-0.0013176	-0.22473	-0.00014446	642.8157535984778	34.395	0.21692	34.395	34.322	34.539	-0.0006485	1152	64	0.92775106	0.0385316	0.9262317	375.58878	0	15.59906						353	10	4	NaN	NaN	NaN	0.03165	1	17667	17667		55.592	31.191	1	58117			29843	3317	17222	17698	23771	23771					-0.01182620185113592
VWFPDMMPTW	10	Unmodified	_VWFPDMMPTW_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.2908448907001	2	655.290845	1308.56714	0.85251	0.00055864	-2.2537	-0.0014768	-1.4012	-0.00091821	655.2897156407232	37.265	0.33697	37.265	37.193	37.53	0	1104	82	0.9570911	0.049503207	0.9570911	387.38806	0	20.036713						495	15	4	NaN	NaN	NaN	0.019347	1	18905	18905		63.958	45.989	1	69881			29844	332	17223	17699	23772	23772					-0.07480403475005915
VWFPDMMPTW	10	Unmodified	_VWFPDMMPTW_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.2908448907001	2	655.290845	1308.56714	0.58713	0.00038474	-0.81475	-0.0005339	-0.22762	-0.00014916	655.2903852113116	37.263	0.26472	37.265	37.193	37.458	0.0022469	1104	79	0.9570911	0.047667205	0.95557165	387.38803	0	19.29358						320	12	3	NaN	NaN	NaN	0.040041	1	18070	18070		55.413	42.312	1	43770			29845	332	17223	17699	23773	23773					-0.07480403475005915
VWFPDMMPTW	10	Oxidation (M)	_VWFPDMM(Oxidation (M))PTW_		VWFPDM(0.001)M(0.999)PTW		VWFPDM(-32)M(32)PTW	0	0	1		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.2883022017501	2	663.288302	1324.56205	1.0207	0.00067701	-3.6008	-0.0023884	-2.5801	-0.0017113	663.2858740855196	33.842	0.19303	33.842	33.721	33.914	0	1116	58	0.94976085	0.034831822	0.94976085	384.3726	0	14.096588						460	9	5	NaN	NaN	NaN	0.00036552	1	19165	19165		93.472	74.308	2	100640			29846	332	17223	17700	23774	23774		29;30			-0.08724707337637483
VWFPDMMPTW	10	Oxidation (M)	_VWFPDM(Oxidation (M))MPTW_		VWFPDM(0.939)M(0.061)PTW		VWFPDM(12)M(-12)PTW	0	0	1		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.2883022017501	2	663.288302	1324.56205	1.627	0.0010791	-2.5566	-0.0016958	-0.92967	-0.00061664	663.2871607883847	34.009	0.26555	34.008	33.936	34.201	-0.0012474	1098	85	0.960755	0.051317334	0.9592356	388.822	0	20.768341						650	12	5	NaN	NaN	NaN	0.0085408	1	18310	18310		73.133	55.163	2	134280			29847	332	17223	17700	23775	23775		29;30			-0.08724707337637483
VWFPDMMPTW	10	Oxidation (M)						0	0	1		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	663.288302	1324.56205	1.2384	0.00082143	-2.2438	-0.0014883	-1.0054	-0.00066684	663.2868974275353	34.01	0.21719	34.01	33.962	34.179	0	1101	82	0.95892316	0.049492598	0.95892316	388.08063		20.029846	0.001237	0.00023023	-0.00015622	NaN	73.133	634	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142950			29848	332	17223	17700				29;30			-0.08724707337637483
VWFPDMMPTW	10	2 Oxidation (M)	_VWFPDM(Oxidation (M))M(Oxidation (M))PTW_		VWFPDM(1)M(1)PTW		VWFPDM(83)M(83)PTW	0	0	2		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.2857595128002	2	671.28576	1340.55697	1.8468	0.0012397	-3.4731	-0.0023315	-1.6264	-0.0010918	671.2837884860581	30.366	0.45851	30.366	30.198	30.656	0	1110	76	0.95342636	0.045821548	0.95342636	385.8085	0	18.5419						1152	20	5	NaN	NaN	NaN	0.0029037	1	19409	19409		82.96	57.999	1	395220			29849	332	17223	17701	23776	23776		29;30			-0.09969011200223576
VWFPDMMPTW	10	2 Oxidation (M)	_VWFPDM(Oxidation (M))M(Oxidation (M))PTW_		VWFPDM(1)M(1)PTW		VWFPDM(96)M(96)PTW	0	0	2		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2857595128002	2	671.28576	1340.55697	1.3864	0.00093067	-2.8025	-0.0018813	-1.4161	-0.00095062	671.2845110096463	30.341	0.36192	30.335	30.238	30.6	-0.0064106	1110	76	0.95342636	0.045826435	0.9519069	385.8085	0	18.543884						1129	16	6	NaN	NaN	NaN	0.00032785	1	18545	18545		95.62	75.106	1	401090			29850	332	17223	17701	23777	23777		29;30			-0.09969011200223576
VWFPGGAF	8	Unmodified	_VWFPGGAF_					0	0	0		ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A	ENST00000543561.1_1_16:67034544-67038818:+|nuORF	ENST00000543561.1_1_16:67034544-67038818:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.72123870430005	2	440.721239	879.427924	2.4325	0.001072	-2.0829	-0.00091797	0.34958	0.00015407	440.7209937558693	23.947	0.048265	23.934	23.91	23.958	-0.013048	1320	28	0.824661	0.016620994	0.8231416	335.48233	0	6.7615967						38	3	2	NaN	NaN	NaN	0.83849	1	5667	5667		4.0537	0	1	2132.3			29851	4026	17224	17702	23778	23778					-0.016612369858535203
VWFPGGAF	8	Unmodified						0	0	0		ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000172824|ENST00000648724|CES4A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A	ENST00000543561.1_1_16:67034544-67038818:+|nuORF	ENST00000543561.1_1_16:67034544-67038818:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	440.721239	879.427924	1.3748	0.0006059	-2.2167	-0.00097694	-0.84189	-0.00037104	440.7199925827855	23.851	0.024122	23.851	23.851	23.875	0	1326	28	0.8209676	0.016620994	0.8209676	333.97986		6.7615967	-0.041576	-5.0026E-05	-0.001087	NaN	4.0537	34	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2635.1			29852	4026	17224	17702							-0.016612369858535203
VWGVPIPVF	9	Unmodified	_VWGVPIPVF_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5818651792	1	1013.58187	1012.57459	1.336	0.0013542	0.13625	0.0001381	1.4723	0.0014923	1013.581327156683	37.843	0.19231	37.843	37.795	37.987	0	198	106	1.5015416	0.06209767	1.5015416	304.80905	0	12.605682						500	9	3	NaN	NaN	NaN	0.015198	1	9094	9094		78.076	57.124	1	73927			29853	721	17225	17703	23779	23779					0.06880440179213565
VWGVPIPVF	9	Unmodified	_VWGVPIPVF_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5818651792	1	1013.58187	1012.57459	1.7715	0.0017956	-0.1601	-0.00016228	1.6114	0.0016333	1013.5819356832886	37.84	0.31254	37.844	37.676	37.988	0.0034218	198	106	1.5015416	0.062084436	1.5000222	304.80905	0	12.602997						553	14	3	NaN	NaN	NaN	0.0029866	1	8916	8916		108.05	75.594	1	79378			29854	721	17225	17703	23780	23780					0.06880440179213565
VWIDAGTQIFF	11	Unmodified	_VWIDAGTQIFF_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;nc|ENSG00000130821|P48029-2|SLC6A8	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.83478840565	2	648.834788	1295.65502	0.79922	0.00051856	-3.2221	-0.0020906	-2.4228	-0.001572	648.8321901255817	35.385	0.096504	35.385	35.337	35.434	0	1119	43	0.9479278	0.025666952	0.9479278	383.7191	0	10.389923						109	5	3	NaN	NaN	NaN	0.2154	1	18700	18700		28.896	15.893	1	8944.4			29855	2707	17226	17704	23781	23781					0.019022567116053324
VWILYRIQL	9	Unmodified	_VWILYRIQL_					0	0	0			REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|2|1|sense	REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|2|1|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3660587443001	2	602.366059	1202.71756	1.7778	0.0010709	-3.8995	-0.0023489	-2.1217	-0.001278	602.3633527896337	23.103	0.12051	23.103	23.055	23.176	0	1119	28	0.9479278	0.01649928	0.9479278	384.03174	0	6.684326						74	6	2	NaN	NaN	NaN	0.61413	1	16561	16561		4.9097	2.0203	1	5785.7	+		29856	13031	17227	17705	23782	23782					0.12431447570452292
VWKISCDC	8	Unmodified	_VWKISCDC_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	477.21460594239994	2	477.214606	952.414659	1.5658	0.00074722	1.5527	0.00074097	3.1185	0.0014882	477.2160123231339	55.1	0.048161	55.1	55.076	55.124	0	1329	52	0.81912065	0.0313918	0.81912065	332.83575	0	12.755493						111	3	4	NaN	NaN	NaN	0.82797	1	7142	7142		5.4659	1.4973	1	15127	+		29857	10948	17228	17706	23783	23783					-0.06345179151776392
VWLPASVLF	9	Unmodified	_VWLPASVLF_					0	0	0		nc|ENSG00000134490|Q24JQ0-2|TMEM241;ENST00000577531.5_1_18:20948694-21017816:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241;nc|ENSG00000134490|Q24JQ0-3|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	nc|ENSG00000134490|Q24JQ0-2|TMEM241	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5924298655	1	1031.59243	1030.58515	1.0204	0.0010526	-1.0047	-0.0010364	0.015699	1.6195E-05	1031.591517381399	37.434	0.12038	37.434	37.386	37.506	0	153	61	1.5281296	0.03541863	1.5281296	310.13348	0	7.1881714						122	6	2	NaN	NaN	NaN	0.056143	1	9818	9818		44.302	27.886	1	9540.6			29858	2877	17229	17707	23784	23784					0.07108422833653094
VWLPRYYH	8	Unmodified	_VWLPRYYH_					0	0	0		nc|ENSG00000141644|Q9UIS9-10|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2981761443501	2	567.298176	1132.5818	1.6828	0.00095466	-6.0393	-0.0034261	-4.3565	-0.0024714	567.2948000752001	24.84	0.096518	24.84	24.816	24.912	0	1050	109	0.9900381	0.06578779	0.9900381	401.3734	0	26.671143						167	5	2	NaN	NaN	NaN	0.84876	1	14189	14189		0.39566	0.16553	1	14796			29859	7951	17230	17708	23785	23785					0.020811727796626656
VWLPRYYH	8	Unmodified						0	0	0		nc|ENSG00000141644|Q9UIS9-10|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	nc|ENSG00000141644|Q9UIS9-10|MBD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.298176	1132.5818	1.2379	0.00070227	-4.7221	-0.0026789	-3.4842	-0.0019766	567.2958442329689	24.84	0.096489	24.827	24.803	24.9	-0.012392	1056	94	0.9863805	0.056671858	0.9848611	399.89056		22.975494	-0.0062819	0.00080262	-0.0025885	NaN	0.39566	141	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13078			29860	7951	17230	17708							0.020811727796626656
VWMRSPLSTF	10	Unmodified	_VWMRSPLSTF_					0	0	0		ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.3157085830001	2	612.315709	1222.61686	1.2673	0.00077598	1.1081	0.00067852	2.3754	0.0014545	612.3155988337473	26.577	0.14482	26.577	26.553	26.698	0	1149	73	0.92958635	0.04405272	0.92958635	376.53156	0	17.843689						267	7	3	NaN	NaN	NaN	0.28717	1	17047	17047		40.006	13.891	1	75796			29861	7586	17231	17709	23786	23786					0.014460475252917604
VWMRSPLSTF	10	Unmodified						0	0	0		ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.315709	1222.61686	0.73409	0.00044949	0.2034	0.00012454	0.93749	0.00057404	612.3160360907465	26.601	0.19304	26.59	26.566	26.759	-0.010645	1143	64	0.9332562	0.038539886	0.93173677	378.01804		15.610718	0.0065948	-0.00026115	0.0010752	NaN	40.006	210	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58494			29862	7586	17231	17709							0.014460475252917604
VWNFPIDVTF	10	Unmodified	_VWNFPIDVTF_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.3162315117501	2	619.316232	1236.61791	0.92433	0.00057245	-2.6284	-0.0016278	-1.704	-0.0010553	619.3149840121644	37.024	0.14444	37.024	36.976	37.121	0	1149	64	0.92958635	0.038552344	0.92958635	376.48398	0	15.61377						247	7	3	NaN	NaN	NaN	0.44412	1	17443	17443		21.771	11.411	1	32126			29863	1686	17232	17710	23787	23787					0.009065851658533575
VWNFPIDVTF	10	Unmodified	_VWNFPIDVTF_					0	0	0		ENST00000575403.5_2_17:19241035-19261261:-|nuORF;ENST00000477478.6_2_17:19247025-19261261:-|nuORF;ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	ENST00000575403.5_2_17:19241035-19261261:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.3162315117501	2	619.316232	1236.61791	0.57359	0.00035523	-2.1524	-0.001333	-1.5788	-0.00097776	619.3157923048265	37.022	0.19239	37.024	36.928	37.121	0.0022507	1149	55	0.92958635	0.03303951	0.9280669	376.48398	0	13.381073						220	9	3	NaN	NaN	NaN	0.34693	1	16716	16716		25.801	14.631	1	24162			29864	1686	17232	17710	23788	23788					0.009065851658533575
VWPKKGTAVFW	11	Unmodified	_VWPKKGTAVFW_					0	0	0		ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.8689655740001	2	659.868966	1317.72338	1.8389	0.0012134	-1.4393	-0.00094973	0.39964	0.00026371	660.3688551124746	22.863	0.072392	22.863	22.814	22.887	0	1083	28	0.9699114	0.016476154	0.9699114	392.54865	0	6.668335						57	4	2	NaN	NaN	NaN	0.65755	1	19077	19077		10.244	5.5146	1	3798.3			29865	2347	17233	17711	23789	23789					0.07722546082118242
VWPKKGTAVFW	11	Unmodified	_VWPKKGTAVFW_					0	0	0		ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.8689655740001	2	659.868966	1317.72338	1.7703	0.0011682	-1.241	-0.00081887	0.52936	0.00034931	659.8679418804204	22.959	0.12039	22.959	22.911	23.031	0	1083	34	0.9699114	0.020137608	0.9699114	392.54865	0	8.1502075						110	6	3	NaN	NaN	NaN	0.53563	1	19078	19078		17.198	7.5868	1	9553.1			29866	2347	17233	17711	23790	23790					0.07722546082118242
VWPKKGTAVFW	11	Unmodified						0	0	0		ENST00000464310.2_1_10:74769532-74774020:-|nuORF;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	ENST00000464310.2_1_10:74769532-74774020:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	659.868966	1317.72338	2.2131	0.0014603	-3.1633	-0.0020873	-0.95017	-0.00062699	660.3685632868323	23.103	0.096277	23.09	23.017	23.114	-0.013294	1083	34	0.9699114	0.020139694	0.96839195	392.54865		8.151093	0.06525	-0.0014017	-0.00075972	NaN	17.198	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4224.3			29867	2347	17233	17711							0.07722546082118242
VWRWLVHLR	9	Unmodified	_VWRWLVHLR_					0	0	0		nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2	nc|ENSG00000095383|Q9BYX2-6|TBC1D2	nc|ENSG00000095383|Q9BYX2-6|TBC1D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.2523699016333	3	422.25237	1263.73528	1.1229	0.00047417	-2.9309	-0.0012376	-1.808	-0.00076342	422.25122651822676	27.228	0.14478	27.218	27.074	27.218	-0.010124	1377	31	0.7895419	0.018502772	0.78802246	479.53082	0	11.237701						76	7	2	NaN	NaN	NaN	0.6634	1	17290	17290		2.3381	0.23557	1	5899.2			29868	1127	17234	17712	23791	23791					0.1139620761596234
VWSDIAPLNF	10	Unmodified	_VWSDIAPLNF_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.30058144755	2	581.300581	1160.58661	1.2506	0.000727	-3.1828	-0.0018502	-1.9322	-0.0011232	581.2983803997358	33.021	0.096584	33.021	32.973	33.069	0	1233	46	0.87812483	0.027608931	0.87812483	355.89908	0	11.189728						115	5	3	NaN	NaN	NaN	0.33935	1	15171	15171		26.115	12.073	1	14358			29869	5786	17235	17713	23792	23792					0.012740121317619924
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.80041427205	2	582.800414	1163.58628	1.6399	0.00095571	-1.9032	-0.0011092	-0.26333	-0.00015347	582.7989779536375	32.056	0.2172	32.056	31.959	32.177	0	1245	94	0.87076044	0.057039917	0.87076044	352.90366	0	23.117249						499	10	3	NaN	NaN	NaN	7.9502E-05	1	15269	15269		111.43	66.795	1	105530			29870	1174	17236	17714	23793	23793					0.011025924118939656
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1164.5935520775	1	1164.59355	1163.58628	2.2942	0.0026718	-0.39712	-0.00046249	1.8971	0.0022093	1164.5927620446519	32.056	0.048241	32.056	32.032	32.08	0	585	46	1.2711272	0.026981354	1.2711272	257.5852	0	5.4675903						63	3	2	NaN	NaN	NaN	0.10581	1	15270	15270		45.165	24.716	1	5225.9			29871	1174	17236	17714	23794	23794					0.011025924118939656
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1164.5935520775	1	1164.59355	1163.58628	2.4537	0.0028575	-0.26699	-0.00031094	2.1867	0.0025466	1164.5932805920363	32.056	0.16892	32.056	32.008	32.177	0	57	145	1.5847093	0.08485174	1.5847093	321.13043	0	17.19461						494	8	4	NaN	NaN	NaN	0.00011927	1	15271	15271		108.53	65.536	1	97783			29872	1174	17236	17714	23795	23795					0.011025924118939656
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.80041427205	2	582.800414	1163.58628	1.0579	0.00061656	-1.6791	-0.00097857	-0.62115	-0.00036201	582.7992365309462	32.055	0.21717	32.051	31.979	32.196	-0.0037613	1242	127	0.87260187	0.07730079	0.8710824	353.64993	0	31.328613						557	10	4	NaN	NaN	NaN	3.5243E-06	1	14744	14744		125.02	79.193	1	108310			29873	1174	17236	17714	23796	23796					0.011025924118939656
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1164.5935520775	1	1164.59355	1163.58628	1.7078	0.0019889	-0.38713	-0.00045085	1.3207	0.0015381	1164.5930212274848	32.055	0.048264	32.051	32.027	32.075	-0.0037613	582	88	1.2729256	0.05220294	1.2714062	257.94962	0	10.5785675						77	3	2	NaN	NaN	NaN	0.47601	1	14745	14745		20.449	3.8645	1	6313.9			29874	1174	17236	17714	23797	23797					0.011025924118939656
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	ENST00000465385.5_1_22:24122222-24125728:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1164.5935520775	1	1164.59355	1163.58628	1.5716	0.0018302	0.38023	0.00044281	1.9518	0.0022731	1164.5943580106118	32.031	0.1689	32.027	32.003	32.172	-0.0037613	57	112	1.5847093	0.065368414	1.5831898	321.13043	0	13.24646						535	8	4	NaN	NaN	NaN	5.1495E-19	1	14746	14746		158.81	103.22	1	88864			29875	1174	17236	17714	23798	23798					0.011025924118939656
VWTSVAVVW	9	Unmodified	_VWTSVAVVW_					0	0	0		nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000522325.1_1_8:62593500-62596676:-|nuORF;ENST00000522036.1_1_8:62596574-62602247:-|nuORF;ENST00000517928.1_1_8:62574468-62597059:-|nuORF;nc|ENSG00000198363|Q12797-7|ASPH;nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH;nc|ENSG00000198363|Q12797-11|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5669433965	1	1046.56694	1045.55967	0.97256	0.0010178	-2.486	-0.0026018	-1.5135	-0.0015839	1046.564498978273	32.127	0.096489	32.123	32.099	32.196	-0.0037575	165	70	1.5210435	0.040737867	1.5195241	308.637	0	8.266174						124	5	2	NaN	NaN	NaN	0.056143	1	10245	10245		44.302	22.467	1	10855			29876	5773	17237	17715	23799	23799					0.038709483112370435
VWTSVAVVW	9	Unmodified						0	0	0		nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH;nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000522325.1_1_8:62593500-62596676:-|nuORF;ENST00000522036.1_1_8:62596574-62602247:-|nuORF;ENST00000517928.1_1_8:62574468-62597059:-|nuORF;nc|ENSG00000198363|Q12797-7|ASPH;nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH;nc|ENSG00000198363|Q12797-11|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	nc|ENSG00000198363|Q12797-9|ASPH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1046.56694	1045.55967	1.4852	0.0015543	-3.6954	-0.0038674	-2.2102	-0.0023131	1046.5644661201022	32.128	0.096531	32.128	32.104	32.201	0	168	67	1.5192716	0.038972855	1.5192716	308.27747		7.9080505	0.0024285	-0.00064285	-0.00012626	NaN	44.302	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10352			29877	5773	17237	17715							0.038709483112370435
VWYFHTLPYL	10	Unmodified	_VWYFHTLPYL_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000485912.1_1_3:183960304-183960812:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8476988156501	2	669.847699	1337.68084	0.80797	0.00054122	-2.4924	-0.0016695	-1.6844	-0.0011283	669.8463790449749	31.549	0.19312	31.549	31.477	31.67	0	1062	49	0.9827221	0.02927363	0.9827221	397.67188	0	11.845978						209	9	3	NaN	NaN	NaN	0.032325	1	19370	19370		58.599	39.436	1	29053			29878	5	17238	17716	23800	23800					0.025511509539001054
VWYFHTLPYL	10	Unmodified	_VWYFHTLPYL_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000485912.1_1_3:183960304-183960812:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8476988156501	2	669.847699	1337.68084	0.57173	0.00038297	-2.3651	-0.0015842	-1.7933	-0.0012013	670.3476344734383	31.596	0.19308	31.592	31.544	31.737	-0.0044174	1062	52	0.9827221	0.031101525	0.98120266	397.67188	0	12.585663						276	9	4	NaN	NaN	NaN	0.00017163	1	18505	18505		104.71	75.815	1	30074			29879	5	17238	17716	23801	23801					0.025511509539001054
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.85077282085	2	587.850773	1173.68699	2.1748	0.0012785	-1.7386	-0.001022	0.43621	0.00025642	587.8493831344425	22.838	0.21691	22.838	22.814	23.031	0	1155	61	0.92591566	0.036702693	0.92591566	375.21924	0	14.873474						323	10	4	NaN	NaN	NaN	0.0040309	1	15616	15616		79.199	41.896	1	98399			29880	7990	17239	17717	23802	23802					0.10709669185393977
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.85077282085	2	587.850773	1173.68699	1.4777	0.00086864	-1.7087	-0.0010045	-0.23104	-0.00013582	587.849478696886	22.886	0.19287	22.872	22.824	23.017	-0.01354	1155	73	0.92591566	0.04404801	0.9243962	375.21924	0	17.850067						334	9	4	NaN	NaN	NaN	0.00036552	1	15061	15061		93.472	56.169	1	95315			29881	7990	17239	17717	23803	23803					0.10709669185393977
VYAAPDAYI	9	Unmodified	_VYAAPDAYI_					0	0	0			REV__ENSG00000143850|ENST00000272203|PLEKHA6	REV__ENSG00000143850|ENST00000272203|PLEKHA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4880243734998	1	982.488024	981.480748	2.3818	0.0023401	3.4354	0.0033753	5.8172	0.0057153	982.4919356011994	29.256	0.4826	29.248	29.151	29.634	-0.0077229	225	268	1.4855686	0.15841007	1.4840492	301.69485	0	32.1705						1714	21	5	NaN	NaN	NaN	0.032417	1	7765	7765		55.947	6.1145	1	1337100	+		29882	9882	17240	17718	23804	23804					-0.010733237137401375
VYADGIFD	8	Unmodified	_VYADGIFD_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4145250793999	1	899.414525	898.407249	2.5929	0.0023321	-1.0984	-0.00098796	1.4945	0.0013441	899.413500168779	25.25	0.048185	25.238	25.238	25.286	-0.012011	369	40	1.4001206	0.023200035	1.3986012	284.7056	0	4.71756						50	3	2	NaN	NaN	NaN	0.80692	1	5923	5923		8.2903	2.5961	1	3250.8			29883	4097	17241	17719	23805	23805					-0.04601872156194986
VYADGIFD	8	Unmodified						0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	899.414525	898.407249	2.1019	0.0018905	-1.7766	-0.0015979	0.32529	0.00029257	899.4124824465521	25.274	0.09651	25.274	25.25	25.346	0	372	37	1.3983358	0.021416545	1.3983358	284.34265		4.3549194	0.01819	-0.00040741	-0.00013268	NaN	8.2903	55	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2926.8			29884	4097	17241	17719							-0.04601872156194986
VYADGIFDL	9	Unmodified	_VYADGIFDL_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4985890597999	1	1012.49859	1011.49131	1.4088	0.0014264	1.3114	0.0013277	2.7202	0.0027542	1012.4997273349774	31.983	0.072412	31.983	31.983	32.056	0	159	91	1.5245869	0.053189874	1.5245869	309.4916	0	10.797546						248	4	3	NaN	NaN	NaN	0.10956	1	9036	9036		34.439	11.104	1	20495			29885	4097	17242	17720	23806	23806					-0.013973410593052904
VYADGIFDL	9	Unmodified	_VYADGIFDL_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4985890597999	1	1012.49859	1011.49131	0.98876	0.0010011	0.51146	0.00051786	1.5002	0.001519	1012.4996123554762	31.982	0.072386	31.979	31.979	32.051	-0.0037594	159	94	1.5245869	0.054954052	1.5230675	309.4916	0	11.155701						225	4	3	NaN	NaN	NaN	0.04947	1	8860	8860		47.136	23.801	1	21722			29886	4097	17242	17720	23807	23807					-0.013973410593052904
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1159.5670029759997	1	1159.567	1158.55973	1.8805	0.0021806	-0.23673	-0.00027451	1.6438	0.0019061	1159.566154743104	38.107	0.14418	38.107	38.059	38.203	0	51	100	1.5882392	0.05828297	1.5882392	321.86212	0	11.811249						323	7	3	NaN	NaN	NaN	0.00039182	1	15091	15091		125.02	77.538	1	32027			29887	4097	17243	17721	23808	23808					-0.013210964794552638
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1159.5670029759997	1	1159.567	1158.55973	2.2514	0.0026107	0.043865	5.0865E-05	2.2953	0.0026616	1159.5674451984694	38.081	0.048058	38.084	38.06	38.108	0.0034256	51	85	1.5882392	0.049439073	1.5867198	321.86212	0	10.019012						140	3	3	NaN	NaN	NaN	0.0019419	1	14591	14591		118.2	77.247	1	15184			29888	4097	17243	17721	23809	23809					-0.013210964794552638
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1159.5670029759997	1	1159.567	1158.55973	2.6629	0.0030878	0.47297	0.00054844	3.1359	0.0036363	1159.568010837694	38.153	0.072102	38.156	38.156	38.228	0.0034256	57	52	1.5847093	0.030008674	1.5831898	321.14676	0	6.08136						60	4	2	NaN	NaN	NaN	0.12314	1	14592	14592		60.982	40.468	1	4722.5			29889	4097	17243	17721	23810	23810					-0.013210964794552638
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.7971433016	2	525.797143	1049.57973	1.0316	0.00054239	-2.1404	-0.0011254	-1.1088	-0.00058301	525.7962322902549	37.048	0.14454	37.048	37	37.145	0	1248	49	0.8689189	0.029470205	0.8689189	352.605	0	11.958923						154	7	3	NaN	NaN	NaN	0.062836	1	10628	10628		41.46	12.794	1	13420			29890	4628	17244	17722	23811	23811					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5870101366	1	1050.58701	1049.57973	1.874	0.0019688	-0.19534	-0.00020522	1.6786	0.0017636	1050.5866043534375	37.048	0.19279	37.048	37	37.193	0	75	94	1.5741152	0.05478549	1.5741152	319.3899	0	11.116028						386	9	4	NaN	NaN	NaN	0.024986	1	10631	10631		65.672	24.212	1	46439			29891	4628	17244	17722	23812	23812					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.7971433016	2	525.797143	1049.57973	1.0805	0.0005681	-1.6612	-0.00087347	-0.58077	-0.00030537	525.7965018554346	37.022	0.096161	37.024	37	37.096	0.0022507	1245	43	0.87076044	0.025783658	0.869241	353.35233	0	10.462921						117	5	3	NaN	NaN	NaN	0.062836	1	10409	10409		41.46	12.794	1	7639.5			29892	4628	17244	17722	23813	23813					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5870101366	1	1050.58701	1049.57973	1.285	0.00135	-0.27408	-0.00028795	1.0109	0.0010621	1050.5863737950203	37.022	0.14436	37.024	37	37.145	0.0022507	78	88	1.5723488	0.05124557	1.5708294	319.0315	0	10.397766						328	7	3	NaN	NaN	NaN	0.020004	1	10411	10411		71.993	40.432	1	42299			29893	4628	17244	17722	23814	23814					0.056926992511762364
VYADIPFLLM	10	Oxidation (M)	_VYADIPFLLM(Oxidation (M))_		VYADIPFLLM(1)		VYADIPFLLM(53)	0	0	1		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.31484291575	2	599.314843	1196.61513	1.0684	0.00064028	-8.0754	-0.0048397	-7.007	-0.0041994	599.3092299683748	34.806	0.12063	34.806	34.782	34.903	0	1173	70	0.91489893	0.04222858	0.91489893	370.6723	0	17.108978						249	6	4	NaN	NaN	NaN	0.050657	1	16359	16359		52.758	28.908	1	49843			29894	4628	17245	17723	23815	23815		495			0.024689937166613163
VYADIPFLLM	10	Oxidation (M)	_VYADIPFLLM(Oxidation (M))_		VYADIPFLLM(1)		VYADIPFLLM(42)	0	0	1		nc|ENSG00000168538|Q7Z392-4|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.31484291575	2	599.314843	1196.61513	0.91481	0.00054826	-9.2243	-0.0055283	-8.3095	-0.00498	599.308213782496	34.805	0.12054	34.804	34.78	34.901	-0.0006485	1170	79	0.91673553	0.04772383	0.9152161	371.4164	0	19.335358						263	6	4	NaN	NaN	NaN	0.13037	1	15717	15717		41.785	21.336	1	46784			29895	4628	17245	17723	23816	23816		495			0.024689937166613163
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.80549964995	2	524.8055	1047.59645	1.3098	0.00068739	-0.97175	-0.00050998	0.33805	0.00017741	524.805049958052	24.695	0.19301	24.695	24.647	24.84	0	1269	67	0.8560222	0.040534675	0.8560222	347.3801	0	16.44925						241	9	2	NaN	NaN	NaN	0.12104	1	10548	10548		32.778	11.007	1	56932			29896	3106	17246	17724	23817	23817					0.07455200137110296
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.80549964995	2	524.8055	1047.59645	1.1403	0.00059843	0.50654	0.00026583	1.6468	0.00086426	524.806184109687	24.695	0.21706	24.682	24.634	24.851	-0.012392	1266	58	0.85786515	0.03501284	0.8563457	348.128	0	14.208466						231	10	4	NaN	NaN	NaN	0.022082	1	10332	10332		69.363	19.402	1	47481			29897	3106	17246	17724	23818	23818					0.07455200137110296
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.2718240081	2	545.271824	1088.5291	1.7392	0.00094836	-1.334	-0.00072737	0.40529	0.000221	545.2704781691244	21.561	0.26511	21.561	21.488	21.754	0	1254	163	0.8652351	0.09940827	0.8652351	350.94742	0	40.320953						756	12	4	NaN	NaN	NaN	0.055351	1	12316	12316		44.638	21.304	1	150530			29898	1247	17247	17725	23819	23819					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.2718240081	2	545.271824	1088.5291	1.7674	0.00096373	-0.25981	-0.00014166	1.5076	0.00082206	545.271528692108	21.561	0.19265	21.547	21.499	21.691	-0.013895	1254	139	0.8652351	0.0846445	0.86371565	350.94742	0	34.33261						693	9	4	NaN	NaN	NaN	0.030391	1	12013	12013		58.599	23.303	1	141770			29899	1247	17247	17725	23820	23820					-0.011628300738266262
VYADYGFL	8	Unmodified	_VYADYGFL_					0	0	0			REV__ENSG00000102007|ENST00000376327|PLP2	REV__ENSG00000102007|ENST00000376327|PLP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.4509105857	1	947.450911	946.443634	1.3077	0.0012389	0.47387	0.00044897	1.7815	0.0016879	947.4509354871435	31.766	0.12068	31.766	31.718	31.839	0	279	106	1.4535767	0.062315702	1.4535767	295.34912	0	12.661774						390	6	4	NaN	NaN	NaN	0.064024	1	6989	6989		74.274	2.2813	1	120680	+		29900	8874	17248	17726	23821	23821					-0.03172995259490108
VYADYGFL	8	Unmodified						0	0	0			REV__ENSG00000102007|ENST00000376327|PLP2	REV__ENSG00000102007|ENST00000376327|PLP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	947.450911	946.443634	1.3077	0.0012389	0.47387	0.00044897	1.7815	0.0016879	947.4509354871435	31.766	0.12068	31.766	31.718	31.839	0	279	106	1.4535767	0.062315702	1.4535767	295.34912		12.661774	0.0027513	4.9908E-05	0.00075972	NaN	74.274	390	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120680	+		29901	8874	17248	17726							-0.03172995259490108
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.7753536144999	2	504.775354	1007.53615	1.3392	0.000676	-1.2558	-0.00063391	0.083382	4.2089E-05	504.77472444822644	32.539	0.096508	32.539	32.514	32.611	0	1278	37	0.85049206	0.022124112	0.85049206	345.31387	0	8.982758						124	5	3	NaN	NaN	NaN	0.03623	1	8890	8890		52.758	26.027	1	14748			29902	4973	17249	17727	23822	23822					0.03268766482381125
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5434307623999	1	1008.54343	1007.53615	1.6228	0.0016367	-0.42961	-0.00043328	1.1932	0.0012034	1008.5438231537751	32.539	0.24129	32.539	32.49	32.732	0	156	136	1.5263584	0.079772234	1.5263584	309.86758	0	16.194641						520	11	4	NaN	NaN	NaN	0.03623	1	8892	8892		52.758	27.006	1	117330			29903	4973	17249	17727	23823	23823					0.03268766482381125
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.7753536144999	2	504.775354	1007.53615	0.77121	0.00038929	-3.0109	-0.0015198	-2.2397	-0.0011306	504.77384679138476	32.537	0.16896	32.534	32.486	32.655	-0.0031052	1275	37	0.85233563	0.022121787	0.8508162	346.0624	0	8.981781						139	8	3	NaN	NaN	NaN	0.17818	1	8720	8720		26.732	11.556	1	16616			29904	4973	17249	17727	23824	23824					0.03268766482381125
VYAEIMAVL	9	Unmodified	_VYAEIMAVL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5434307623999	1	1008.54343	1007.53615	1.3366	0.0013481	-1.2511	-0.0012618	0.085574	8.6305E-05	1008.5427491331793	32.537	0.26547	32.534	32.486	32.751	-0.0031052	156	103	1.5263584	0.060243487	1.5248389	309.86758	0	12.230103						578	12	4	NaN	NaN	NaN	0.049695	1	8721	8721		47.04	17.442	1	118650			29905	4973	17249	17727	23825	23825					0.03268766482381125
VYAEIMAVL	9	Oxidation (M)	_VYAEIM(Oxidation (M))AVL_		VYAEIM(1)AVL		VYAEIM(47)AVL	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.77281092555	2	512.772811	1023.53107	0.86174	0.00044188	-1.0827	-0.00055519	-0.22099	-0.00011332	512.7722286310639	28.025	0.048265	28.016	27.992	28.04	-0.0089779	1275	43	0.85233563	0.025811553	0.8508162	345.98953	0	10.477692						113	3	4	NaN	NaN	NaN	0.049695	1	9323	9323		47.04	15.479	1	27528			29906	4973	17249	17728	23826	23826		520			0.020244626197722937
VYAEIMAVL	9	Oxidation (M)	_VYAEIM(Oxidation (M))AVL_		VYAEIM(1)AVL		VYAEIM(53)AVL	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-3|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5383453845	1	1024.53835	1023.53107	1.2826	0.0013141	-0.93368	-0.00095659	0.34893	0.00035749	1024.5375385199168	28.025	0.048265	28.016	27.992	28.04	-0.0089779	144	97	1.533442	0.056693792	1.5319226	311.23996	0	11.507019						124	3	2	NaN	NaN	NaN	0.03623	1	9325	9325		52.758	13.84	1	39074			29907	4973	17249	17728	23827	23827		520			0.020244626197722937
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.8451561267001	2	581.845156	1161.67576	1.5708	0.00091395	-0.7416	-0.00043149	0.82918	0.00048245	581.8448351767507	26.843	0.1448	26.843	26.819	26.964	0	1167	43	0.91857195	0.025708497	0.91857195	372.28796	0	10.419403						162	7	4	NaN	NaN	NaN	0.43797	1	15215	15215		22.026	9.7191	1	23271			29908	1984	17250	17729	23828	23828					0.10138847091275238
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.8451561267001	2	581.845156	1161.67576	1.2549	0.00073015	-1.4103	-0.00082055	-0.15538	-9.0405E-05	581.8444149146706	26.891	0.14484	26.88	26.832	26.976	-0.010643	1167	46	0.91857195	0.027546287	0.9170525	372.28796	0	11.164246						185	7	4	NaN	NaN	NaN	0.14791	1	14698	14698		40.006	24.831	1	25869			29909	1984	17250	17729	23829	23829					0.10138847091275238
VYAFDLLGF	9	Unmodified	_VYAFDLLGF_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.540059944	1	1044.54006	1043.53278	0.90507	0.00094538	0.85769	0.00089589	1.7628	0.0018413	1044.5400361534944	38.179	0.14415	38.179	38.107	38.251	0	93	70	1.5635144	0.04065156	1.5635144	317.26282	0	8.248871						189	7	2	NaN	NaN	NaN	0.12945	1	10357	10357		31.561	11.006	1	17327			29910	402	17251	17730	23830	23830					0.012758397000425248
VYAFDLLGF	9	Unmodified	_VYAFDLLGF_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.540059944	1	1044.54006	1043.53278	1.5649	0.0016346	0.78534	0.00082032	2.3502	0.0024549	1044.540709521916	38.153	0.1442	38.156	38.108	38.252	0.0034256	84	73	1.5688156	0.04241681	1.5672961	318.33853	0	8.607056						220	7	3	NaN	NaN	NaN	0.11467	1	10152	10152		33.698	9.8479	1	17250			29911	402	17251	17730	23831	23831					0.012758397000425248
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1089.5251381612998	1	1089.52514	1088.51786	1.4945	0.0016283	-3.0434	-0.0033159	-1.5489	-0.0016876	1089.5213028405087	31.477	0.21722	31.477	31.428	31.646	0	75	133	1.5741152	0.0778054	1.5741152	319.24164	0	15.7795105						564	10	4	NaN	NaN	NaN	6.1965E-18	1	12309	12309		158.26	71.237	1	117290			29912	1489	17252	17731	23832	23832					-0.02285652167961416
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5251381612998	1	1089.52514	1088.51786	0.74917	0.00081623	-4.0956	-0.0044623	-3.3465	-0.0036461	1089.5227637808389	31.476	0.26548	31.471	31.375	31.64	-0.0044155	75	127	1.5741152	0.07426095	1.5725957	319.24164	0	15.060638						812	12	4	NaN	NaN	NaN	9.7712E-12	1	12004	12004		144.65	67.91	1	138500			29913	1489	17252	17731	23833	23833					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.26620731395	2	545.266207	1088.51786	1.0587	0.00057729	7.5114	0.0040957	8.5701	0.004673	545.2703724182254	30.97	0.3137	30.97	30.849	31.163	0	1263	91	0.85970795	0.055244684	0.85970795	348.70557	0	22.407745						633	14	3	NaN	NaN	NaN	0.23112	1	12314	12314		23.334	1.2081	1	149790			29914	2154	17253	17732	23834	23834					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1089.5251381612998	1	1089.52514	1088.51786	1.1471	0.0012498	0.5615	0.00061176	1.7086	0.0018616	1089.5308018424107	30.969	0.24136	30.964	30.94	31.181	-0.0050716	78	127	1.5723488	0.07426882	1.5708294	318.8834	0	15.062256						722	11	4	NaN	NaN	NaN	3.9799E-05	1	12007	12007		126.58	59.425	1	115930			29915	2154	17253	17732	23835	23835					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.26620731395	2	545.266207	1088.51786	1.4359	0.00078295	5.3783	0.0029326	6.8142	0.0037156	545.269441813957	30.969	0.33792	30.964	30.843	31.181	-0.0050716	1260	97	0.8615505	0.058927655	0.8600311	349.45294	0	23.90158						684	15	4	NaN	NaN	NaN	0.062072	1	12010	12010		41.785	13.996	1	150530			29916	2154	17253	17732	23836	23836					-0.02285652167961416
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	438.88412328729993	3	438.884123	1313.63054	1.0768	0.00047259	-0.48356	-0.00021223	0.59324	0.00026036	438.8837195743299	14.909	0.26428	14.909	14.837	15.101	0	1425	40	0.7599118	0.024094045	0.7599118	461.34564	0	14.6276245						264	12	4	NaN	NaN	NaN	0.2358	1	19010	19010		20.688	9.8262	1	45592			29917	1982	17254	17733	23837	23837					-0.013729586512681635
VYAIFRILL	9	Unmodified	_VYAIFRILL_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.34987736385	2	554.349877	1106.6852	0.50289	0.00027878	-1.7552	-0.00097301	-1.2523	-0.00069424	554.349197210993	33.769	0.072346	33.769	33.745	33.817	0	1194	40	0.902037	0.023894131	0.902037	365.7996	0	9.689667						82	4	3	NaN	NaN	NaN	0.36492	1	13148	13148		15.175	6.8851	1	5723.2			29918	5784	17255	17734	23838	23838					0.13612660167450485
VYAIFRILL	9	Unmodified						0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.349877	1106.6852	1.2003	0.00066537	-1.8789	-0.0010416	-0.67865	-0.00037621	554.3486588017587	33.889	0.096497	33.887	33.839	33.936	-0.0012474	1194	31	0.902037	0.018379092	0.9005176	365.7996		7.453186	0.059091	-5.5048E-05	-0.00075972	NaN	15.175	65	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4882.4			29919	5784	17255	17734							0.13612660167450485
VYAIIMTDL	9	Oxidation (M)	_VYAIIM(Oxidation (M))TDL_		VYAIIM(1)TDL		VYAIIM(56)TDL	0	0	1		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5489100707998	1	1054.54891	1053.54163	2.2432	0.0023655	-0.38731	-0.00040844	1.8559	0.0019571	1054.548603041486	28.219	0.096529	28.219	28.194	28.291	0	102	55	1.5582114	0.03182614	1.5582114	316.14758	0	6.457245						144	5	3	NaN	NaN	NaN	0.032417	1	10799	10799		55.947	17.817	1	15301			29920	3527	17256	17735	23839	23839		394			0.01700445274195772
VYAIIMTDL	9	Oxidation (M)	_VYAIIM(Oxidation (M))TDL_		VYAIIM(1)TDL		VYAIIM(100)TDL	0	0	1		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5489100707998	1	1054.54891	1053.54163	1.3902	0.001466	-0.96848	-0.0010213	0.42172	0.00044472	1054.5476559303136	28.242	0.072388	28.233	28.209	28.281	-0.0089779	102	52	1.5582114	0.030056357	1.556692	316.14758	0	6.098175						87	4	2	NaN	NaN	NaN	0.0055068	1	10577	10577		101.55	67.115	1	11504			29921	3527	17256	17735	23840	23840		394			0.01700445274195772
VYAIIMTDLF	10	Unmodified	_VYAIIMTDLF_					0	0	0		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.31484291575	2	593.314843	1184.61513	1.0127	0.00060084	-1.0076	-0.00059783	0.0050762	3.0118E-06	593.3140640160385	36.952	0.072208	36.952	36.928	37	0	1146	70	0.93142134	0.04221946	0.93142134	377.4099	0	17.107239						114	4	3	NaN	NaN	NaN	0.47445	1	16004	16004		33.698	15.899	1	8573.6			29922	3527	17257	17736	23841	23841					0.03020993716677367
VYAIIMTDLF	10	Unmodified	_VYAIIMTDLF_					0	0	0		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.31484291575	2	593.314843	1184.61513	0.92043	0.0005461	-0.44777	-0.00026567	0.47266	0.00028043	593.3148463752099	36.95	0.096085	36.952	36.928	37.024	0.0022507	1146	52	0.93142134	0.031195581	0.9299019	377.4099	0	12.640381						112	5	3	NaN	NaN	NaN	0.50283	1	15396	15396		31.561	16.386	1	7844.6			29923	3527	17257	17736	23842	23842					0.03020993716677367
VYAIKNHYW	9	Unmodified	_VYAIKNHYW_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.5415860426333	3	398.541586	1192.60293	1.8279	0.0007285	-0.782	-0.00031166	1.0459	0.00041684	398.5411679128775	18.34	0.096073	18.34	18.316	18.412	0	1482	61	0.72465914	0.03714633	0.72465914	440.40726	0	22.575409						155	5	3	NaN	NaN	NaN	0.10363	1	16225	16225		35.296	23.735	1	13960			29924	862	17258	17737	23843	23843					0.01433138088486885
VYAIKNHYW	9	Unmodified	_VYAIKNHYW_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.30874083065	2	597.308741	1192.60293	1.8783	0.0011219	-0.76578	-0.00045741	1.1125	0.00066453	597.3088557252978	18.364	0.14402	18.364	18.316	18.46	0	1176	43	0.9130621	0.02571404	0.9130621	369.94226	0	10.418488						137	7	3	NaN	NaN	NaN	0.2345	1	16226	16226		20.555	7.9676	1	12189			29925	862	17258	17737	23844	23844					0.01433138088486885
VYAIKNHYW	9	Unmodified	_VYAIKNHYW_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.30874083065	2	597.308741	1192.60293	1.5614	0.00093262	0.29161	0.00017418	1.853	0.0011068	597.310595725881	18.506	0.192	18.492	18.42	18.612	-0.01395	1176	43	0.9130621	0.025716841	0.91154265	369.94226	0	10.419617						158	9	3	NaN	NaN	NaN	0.030696	1	15611	15611		49.833	31.599	1	15243			29926	862	17258	17737	23845	23845					0.01433138088486885
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.78710993155	2	493.78711	985.559667	1.9726	0.00097405	-1.5503	-0.00076552	0.42231	0.00020853	493.78635529476026	23.658	0.12053	23.658	23.61	23.73	0	1263	58	0.85970795	0.035016656	0.85970795	349.16055	0	14.221619						265	6	4	NaN	NaN	NaN	0.024986	1	8077	8077		65.672	24.212	1	82743			29927	1352	17259	17738	23846	23846					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	493.78710993155	2	493.78711	985.559667	1.4087	0.00069561	-0.66594	-0.00032883	0.74278	0.00036678	493.7867511796943	23.682	0.26509	23.669	23.621	23.886	-0.013048	1263	55	0.85970795	0.033168256	0.8581885	349.16052	0	13.470947						306	12	4	NaN	NaN	NaN	0.032417	1	7907	7907		55.947	14.487	1	89999			29928	1352	17259	17738	23847	23847					0.06630948311226348
VYAKYWIYV	9	Unmodified	_VYAKYWIYV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.8236924031	2	602.823692	1203.63283	1.2502	0.00075362	-1.6378	-0.00098732	-0.38767	-0.0002337	602.8228479044504	26.94	0.26542	26.94	26.891	27.157	0	1128	58	0.9424274	0.034843147	0.9424274	381.80008	0	14.115784						432	12	4	NaN	NaN	NaN	0.043119	1	16584	16584		49.833	30.669	1	101120			29929	1431	17260	17739	23848	23848					0.039160770338412476
VYAKYWIYV	9	Unmodified	_VYAKYWIYV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.8236924031	2	602.823692	1203.63283	0.88327	0.00053245	-1.6571	-0.00099897	-0.77388	-0.00046651	602.822637822097	26.987	0.28961	26.977	26.88	27.17	-0.010126	1128	58	0.9424274	0.034839332	0.94090796	381.80008	0	14.114258						451	13	4	NaN	NaN	NaN	0.056143	1	15930	15930		44.302	26.503	1	94765			29930	1431	17260	17739	23849	23849					0.039160770338412476
VYALELLTI	9	Unmodified	_VYALELLTI_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.6132248871	1	1034.61322	1033.60595	1.2776	0.0013218	-0.42706	-0.00044184	0.85053	0.00087997	1034.6122357647487	36.107	0.12046	36.108	36.06	36.181	0.0011024	75	55	1.5741152	0.031792402	1.5725957	319.45392	0	6.451996						163	6	3	NaN	NaN	NaN	0.062836	1	9738	9738		41.46	4.8736	1	17347			29931	1801	17261	17740	23850	23850					0.09048968422666803
VYALVVVSY	9	Unmodified	_VYALVVVSY_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5713600724	1	1012.57136	1011.56408	1.8971	0.001921	-1.7328	-0.0017546	0.16434	0.00016641	1012.5712448520212	29.474	0.24137	29.474	29.425	29.667	0	153	124	1.5281296	0.07267356	1.5281296	310.21048	0	14.752777						473	11	3	NaN	NaN	NaN	0.078597	1	9057	9057		38.918	10.251	1	118830			29932	5826	17262	17741	23851	23851					0.05876412734130554
VYALVVVSY	9	Unmodified	_VYALVVVSY_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5713600724	1	1012.57136	1011.56408	1.607	0.0016272	-2.723	-0.0027572	-1.1159	-0.00113	1012.5711439508085	29.473	0.26542	29.466	29.417	29.683	-0.0070667	150	112	1.5299006	0.065562606	1.5283811	310.57	0	13.309204						603	12	4	NaN	NaN	NaN	0.032417	1	8882	8882		55.947	25.156	1	119200			29933	5826	17262	17741	23852	23852					0.05876412734130554
VYALVVVSY	9	Unmodified	_VYALVVVSY_					0	0	0		ENST00000510556.1_1_4:109571811-109578607:+|nuORF;ENSG00000198856|ENST00000361564|OSTC;nc|ENSG00000198856|Q9NRP0-2|OSTC	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	ENST00000510556.1_1_4:109571811-109578607:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	506.7893182695	2	506.789318	1011.56408	1.0488	0.0005315	-2.0587	-0.0010433	-1.01	-0.00051185	506.78852613424726	29.473	0.12064	29.466	29.417	29.538	-0.0070667	1335	31	0.8154261	0.018476725	0.81390667	331.05878	0	7.501465						89	6	3	NaN	NaN	NaN	0.08074	1	8883	8883		38.608	5.4709	1	9016.9			29934	5826	17262	17741	23853	23853					0.05876412734130554
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.28526573435005	2	510.285266	1018.55598	2.1329	0.0010884	-1.3293	-0.00067831	0.8036	0.00041007	510.2845591120683	17.501	0.23965	17.501	17.477	17.717	0	1269	58	0.8560222	0.035009086	0.8560222	347.50854	0	14.212189						208	11	3	NaN	NaN	NaN	0.03623	1	9327	9327		52.758	19.06	1	24288			29935	3518	17263	17742	23854	23854					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	ENSG00000145495|ENST00000274140|MARCHF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.28526573435005	2	510.285266	1018.55598	1.5031	0.00076703	0.20184	0.00010299	1.705	0.00087002	510.28520791538716	17.546	0.16784	17.532	17.508	17.676	-0.013567	1269	61	0.8560222	0.03685367	0.85450274	347.50854	0	14.960999						189	8	3	NaN	NaN	NaN	0.14301	1	9135	9135		29.598	10.314	1	22876			29936	3518	17263	17742	23855	23855					0.047442785373846164
VYAPPVGGFSF	11	Unmodified	_VYAPPVGGFSF_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1140.5724227049	1	1140.57242	1139.56515	2.4018	0.0027394	-0.87889	-0.0010024	1.5229	0.001737	1140.5709428758155	30.415	0.12065	30.415	30.366	30.487	0	66	64	1.579413	0.037085176	1.579413	320.13635	0	7.5169373						214	6	2	NaN	NaN	NaN	0.0086553	1	14429	14429		70.6	42.811	1	35741			29937	3057	17264	17743	23856	23856					0.0009462710304433131
VYAPPVGGFSF	11	Unmodified	_VYAPPVGGFSF_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1140.5724227049	1	1140.57242	1139.56515	1.3375	0.0015255	-0.53345	-0.00060843	0.80402	0.00091704	1140.5713993789916	30.414	0.19306	30.407	30.335	30.528	-0.0064106	69	70	1.5776473	0.0406214	1.5761279	319.77844	0	8.233704						261	9	2	NaN	NaN	NaN	0.0086553	1	13958	13958		70.6	42.811	1	38260			29938	3057	17264	17743	23857	23857					0.0009462710304433131
VYAQHLAFFSR	11	Unmodified	_VYAQHLAFFSR_					0	0	0		ENST00000434555.6_1_1:44446805-44447499:+|nuORF;ENSG00000117411|ENST00000372324|B4GALT2;nc|ENSG00000117411|O60909-3|B4GALT2	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8513041371	2	669.851304	1337.68806	1.4115	0.00094549	3.7178	0.0024903	5.1292	0.0034358	669.8528599979951	29.136	0.072393	29.136	29.112	29.184	0	1074	31	0.9754029	0.018301904	0.9754029	394.71002	0	7.406128						50	4	2	NaN	NaN	NaN	0.73455	1	19371	19371		5.1889	0	1	4188.2			29939	2142	17265	17744	23858	23858					0.032718835542937086
VYAQHLAFFSR	11	Unmodified						0	0	0		ENST00000434555.6_1_1:44446805-44447499:+|nuORF;ENSG00000117411|ENST00000372324|B4GALT2;nc|ENSG00000117411|O60909-3|B4GALT2	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	669.851304	1337.68806	1.7556	0.001176	1.8955	0.0012697	3.6511	0.0024457	670.354703059304	29.159	0.048269	29.151	29.127	29.175	-0.0077209	1077	37	0.9735726	0.02196467	0.9720532	393.9694		8.888336	0.0078081	-0.0012019	-0.0016749	NaN	5.1889	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3549.9			29940	2142	17265	17744							0.032718835542937086
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.80382262825	2	557.803823	1113.59309	1.8666	0.0010412	-1.3372	-0.00074587	0.52943	0.00029532	557.8028982146375	11.548	0.21605	11.548	11.5	11.716	0	1191	34	0.90387505	0.020218074	0.90387505	366.51697	0	8.198334						111	10	2	NaN	NaN	NaN	0.03623	1	13440	13440		52.758	23.16	1	9301.2			29941	5695	17266	17745	23859	23859					0.04083950083122545
VYAQKHQQL	9	Unmodified						0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	557.803823	1113.59309	1.4699	0.00081993	-2.4391	-0.0013606	-0.96921	-0.00054063	557.8025742064935	11.574	0.12001	11.566	11.494	11.614	-0.0075302	1191	34	0.90387505	0.020218074	0.9023556	366.51697		8.198334	0.009245	-0.00059988	-0.00075972	NaN	52.758	89	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8057.1			29942	5695	17266	17745							0.04083950083122545
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5979091739	1	1053.59791	1052.59063	1.8579	0.0019575	-1.8826	-0.0019835	-0.024626	-2.5946E-05	1053.5964086211252	35.82	0.19288	35.82	35.747	35.94	0	72	121	1.5758814	0.070694685	1.5758814	319.7364	0	14.343506						312	9	2	NaN	NaN	NaN	0.017914	1	10756	10756		64.55	17.414	1	77868			29943	5122	17267	17746	23860	23860					0.06644101625465737
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.82114971415	2	568.82115	1135.62775	1.8862	0.0010729	-2.3034	-0.0013102	-0.41721	-0.00023732	568.8203957759274	23.658	0.14461	23.658	23.61	23.754	0	1230	40	0.8799654	0.023925126	0.8799654	356.7371	0	9.699219						145	7	4	NaN	NaN	NaN	0.15916	1	14308	14308		39.039	13.238	1	18666			29944	2377	17268	17747	23861	23861					0.06535773171231085
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.82114971415	2	568.82115	1135.62775	1.5409	0.00087648	-1.1905	-0.0006772	0.35035	0.00019929	568.8205548970977	23.682	0.072254	23.669	23.645	23.717	-0.013048	1224	52	0.883646	0.03128332	0.88212657	358.2292	0	12.68222						120	4	3	NaN	NaN	NaN	0.20007	1	13841	13841		35.523	16.405	1	16958			29945	2377	17268	17747	23862	23862					0.06535773171231085
VYAVLGFSF	9	Unmodified	_VYAVLGFSF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5294952577001	1	1002.5295	1001.52222	0.88397	0.00088621	2.0173	0.0020224	2.9013	0.0029086	1002.5310862037379	35.144	0.24134	35.144	35.096	35.337	0	153	79	1.5281296	0.046039343	1.5281296	310.2523	0	9.347229						283	11	3	NaN	NaN	NaN	0.024986	1	8657	8657		65.672	18.536	1	32078			29946	3415	17269	17748	23863	23863					0.021518570456123598
VYAVLGFSF	9	Unmodified	_VYAVLGFSF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.5294952577001	1	1002.5295	1001.52222	1.1801	0.0011831	1.3807	0.0013842	2.5608	0.0025673	1002.5300304074577	35.143	0.1207	35.143	35.119	35.239	-4.5776E-05	150	73	1.5299006	0.042506814	1.5283811	310.61185	0	8.630066						258	6	3	NaN	NaN	NaN	0.056273	1	8483	8483		44.247	5.639	1	30752			29947	3415	17269	17748	23864	23864					0.021518570456123598
VYAVPILIF	9	Unmodified	_VYAVPILIF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.6284810207999	1	1034.62848	1033.6212	1.043	0.0010791	0.20311	0.00021014	1.2461	0.0012892	1034.6283641711568	38.9	0.24029	38.9	38.828	39.068	0	117	112	1.5493695	0.06546545	1.5493695	314.43192	0	13.285645						675	11	5	NaN	NaN	NaN	0.033463	1	9944	9944		54.579	9.9464	1	173830			29948	2861	17270	17749	23865	23865					0.10573880010497305
VYAVPILIF	9	Unmodified	_VYAVPILIF_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.6284810207999	1	1034.62848	1033.6212	1.6074	0.0016631	0.12758	0.000132	1.735	0.0017951	1034.6281112697109	38.874	0.26443	38.879	38.807	39.071	0.0046844	114	112	1.5511382	0.0654515	1.5496187	314.79086	0	13.282867						692	12	4	NaN	NaN	NaN	0.033463	1	9741	9741		54.579	18.834	1	181810			29949	2861	17270	17749	23866	23866					0.10573880010497305
VYAVVRGLFL	10	Unmodified	_VYAVVRGLFL_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8449591614501	2	568.844959	1135.67537	1.6698	0.00094986	-2.179	-0.0012395	-0.50916	-0.00028963	568.8438506453464	28.918	0.16897	28.918	28.894	29.063	0	1173	49	0.91489893	0.029387534	0.91489893	370.89893	0	11.913666						137	8	2	NaN	NaN	NaN	0.033206	1	14312	14312		58.235	33.274	1	39677			29950	3141	17271	17750	23867	23867					0.11295472162078113
VYAVVRGLFL	10	Unmodified	_VYAVVRGLFL_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.8449591614501	2	568.844959	1135.67537	0.95736	0.00054459	-3.3516	-0.0019066	-2.3943	-0.001362	568.8444203531308	28.966	0.19306	28.958	28.91	29.103	-0.0077229	1173	52	0.91489893	0.031229258	0.9133795	370.89893	0	12.660309						204	9	2	NaN	NaN	NaN	0.14619	1	13845	13845		40.154	19.705	1	41515			29951	3141	17271	17750	23868	23868					0.11295472162078113
VYCDDIDLEDI	11	Unmodified	_VYCDDIDLEDI_					0	0	0		ENSG00000188770|ENST00000367222|OPTC	ENSG00000188770|ENST00000367222|OPTC	ENSG00000188770|ENST00000367222|OPTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.7843008586	2	656.784301	1311.55405	1.4956	0.00098229	-6.6765	-0.004385	-5.1809	-0.0034027	656.7804393409492	21.754	0.14442	21.754	21.705	21.85	0	1146	58	0.93142134	0.034858167	0.93142134	376.98914	0	14.108704						276	7	4	NaN	NaN	NaN	0.48069	1	18970	18970		19.164	7.4247	1	33695			29952	5564	17272	17751	23869	23869					-0.08926607844068712
VYCFYDWR	8	Unmodified	_VYCFYDWR_					0	0	0		ENST00000524302.1_1_6:56716117-56716639:-|nuORF;ENST00000517937.1_1_6:56599965-56716690:-|nuORF	ENST00000524302.1_1_6:56716117-56716639:-|nuORF	ENST00000524302.1_1_6:56716117-56716639:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.25257700995	2	576.252577	1150.4906	0.98841	0.00056957	-10.472	-0.0060346	-9.4838	-0.0054651	576.2446804283256	31.114	0.096512	31.109	31.084	31.181	-0.0050716	1224	73	0.883646	0.044181406	0.88212657	358.1737	0	17.908325						200	5	3	NaN	NaN	NaN	0.76633	1	14310	14310		13.737	3.9911	1	19946			29953	7379	17273	17752	23870	23870					-0.07862458980002884
VYCWPQVDGDP	11	Unmodified	_VYCWPQVDGDP_					0	0	0			REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.77661321225	2	639.776613	1277.53867	2.0099	0.0012859	1.6066	0.0010278	3.6165	0.0023138	639.7778934871799	22.766	0.096466	22.766	22.718	22.814	0	1158	55	0.92408	0.033035994	0.92408	374.12152	0	13.374908						141	5	4	NaN	NaN	NaN	0.48069	1	18364	18364		19.164	0.045272	1	20890	+		29954	8215	17274	17753	23871	23871					-0.0889942985061225
VYCWPQVDGDP	11	Unmodified						0	0	0			REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.776613	1277.53867	2.0099	0.0012859	1.6066	0.0010278	3.6165	0.0023138	639.7778934871799	22.766	0.096466	22.766	22.718	22.814	0	1158	55	0.92408	0.033035994	0.92408	374.12152		13.374908	0.079448	0.0013901	-0.0038284	NaN	19.164	141	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20890	+		29955	8215	17274	17753							-0.0889942985061225
VYCWPQVDGDP	11	Unmodified						0	0	0			REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-6|KREMEN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	639.776613	1277.53867	2.3716	0.0015173	-2.1339	-0.0013652	0.23765	0.00015204	639.7756624620507	22.621	0.048233	22.607	22.607	22.655	-0.01354	1143	37	0.9332562	0.022014499	0.93173677	377.83658		8.91275	-0.079448	-0.0033961	0.0038284	NaN	19.164	39	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3632.7	+		29956	8215	17274	17753							-0.0889942985061225
VYDALNVLM	9	Oxidation (M)	_VYDALNVLM(Oxidation (M))_		VYDALNVLM(1)		VYDALNVLM(53)	0	0	1		ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000114126|Q14188-5|TFDP2;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2;TUBGCP3-TFDP1|1|fusion	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5285089796998	1	1053.52851	1052.52123	1.9381	0.0020418	-0.93487	-0.00098491	1.0032	0.0010569	1053.5274884714179	27.446	0.096556	27.446	27.422	27.519	0	129	64	1.5422925	0.03715992	1.5422925	312.92166	0	7.5395203						188	5	3	NaN	NaN	NaN	0.03618	1	10739	10739		52.78	16.193	1	21063			29957	1943	17275	17754	23872	23872		218			-0.0029272538561144756
VYDALNVLM	9	Oxidation (M)	_VYDALNVLM(Oxidation (M))_		VYDALNVLM(1)		VYDALNVLM(85)	0	0	1		ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000114126|Q14188-5|TFDP2;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2;TUBGCP3-TFDP1|1|fusion	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5285089796998	1	1053.52851	1052.52123	1.3033	0.0013731	-0.4035	-0.0004251	0.89981	0.00094798	1053.527456489081	27.47	0.12063	27.46	27.412	27.533	-0.0095501	129	67	1.5422925	0.03893149	1.540773	312.92166	0	7.898987						188	6	3	NaN	NaN	NaN	0.012495	1	10515	10515		85.344	52.892	1	19944			29958	1943	17275	17754	23873	23873		218			-0.0029272538561144756
VYDALNVLM	9	Unmodified	_VYDALNVLM_					0	0	0		ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-3|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;nc|ENSG00000114126|Q14188-5|TFDP2;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2;ENSG00000114126|ENST00000489671|TFDP2;TUBGCP3-TFDP1|1|fusion	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	ENST00000453595.1_1_X:36980271-36981156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5335943576	1	1037.53359	1036.52632	0.87227	0.00090501	0.39064	0.0004053	1.2629	0.0013103	1037.5342754719074	31.283	0.1448	31.277	31.205	31.35	-0.0050716	123	112	1.5458313	0.06551397	1.5443119	313.7023	0	13.295044						198	7	2	NaN	NaN	NaN	0.11656	1	9857	9857		33.425	4.7588	1	28266			29959	1943	17275	17755	23874	23874					0.009515784770201208
VYDDLKYVW	9	Unmodified	_VYDDLKYVW_					0	0	0		nc|ENSG00000102032|P51606-2|RENBP;nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-2|RENBP	nc|ENSG00000102032|P51606-2|RENBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.80041427205	2	600.800414	1199.58628	1.977	0.0011878	-0.10924	-6.5631E-05	1.8678	0.0011222	600.8006232868946	26.239	0.19308	26.239	26.167	26.36	0	1161	91	0.9222442	0.05508375	0.9222442	373.63766	0	22.31662						306	9	2	NaN	NaN	NaN	0.017558	1	16464	16464		75.089	46.193	1	105590			29960	1359	17276	17756	23875	23875					-0.005534075881087119
VYDDLKYVW	9	Unmodified	_VYDDLKYVW_					0	0	0		nc|ENSG00000102032|P51606-2|RENBP;nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-2|RENBP	nc|ENSG00000102032|P51606-2|RENBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.80041427205	2	600.800414	1199.58628	1.5418	0.0009263	-0.67638	-0.00040637	0.86539	0.00051993	600.7998192510092	26.239	0.24127	26.228	26.18	26.421	-0.011137	1158	85	0.92408	0.051405966	0.9225606	374.38144	0	20.8266						555	11	4	NaN	NaN	NaN	0.040769	1	15815	15815		50.831	31.667	1	125840			29961	1359	17276	17756	23876	23876					-0.005534075881087119
VYDDMAFRYL	10	Unmodified	_VYDDMAFRYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8026309975	2	646.802631	1291.59071	1.4923	0.00096521	0.92791	0.00060018	2.4202	0.0015654	646.8030273154119	27.012	0.12069	27.012	26.988	27.109	0	1104	43	0.9570911	0.025650322	0.9570911	387.44122	0	10.383545						80	6	2	NaN	NaN	NaN	0.5358	1	18614	18614		17.97	7.6095	1	11560			29962	1497	17277	17757	23877	23877					-0.04342266436833597
VYDDMAFRYL	10	Unmodified	_VYDDMAFRYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8026309975	2	646.802631	1291.59071	1.4182	0.00091728	-1.8672	-0.0012077	-0.44901	-0.00029042	646.8024080062231	27.035	0.14482	27.025	26.977	27.122	-0.010124	1107	46	0.9552588	0.02748102	0.9537394	386.69952	0	11.124634						145	7	4	NaN	NaN	NaN	0.50283	1	17784	17784		19.336	8.9763	1	11797			29963	1497	17277	17757	23878	23878					-0.04342266436833597
VYDDQTAEL	9	Unmodified	_VYDDQTAEL_					0	0	0			REV__nc|ENSG00000106278|P23471-3|PTPRZ1	REV__nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.4734965213	1	1053.4735	1052.46622	1.5958	0.0016812	2.2202	0.0023389	3.816	0.0040201	1053.4759738561024	22.814	0.096415	22.8	22.704	22.8	-0.01354	186	52	1.5086359	0.030142546	1.5071164	306.09317	0	6.1157227						143	5	2	NaN	NaN	NaN	0.089764	1	10498	10498		37.302	8.4068	1	17250	+		29964	8984	17278	17758	23879	23879					-0.05791440652524216
VYDGFSFI	8	Unmodified	_VYDGFSFI_					0	0	0		ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	ENSG00000116918|ENST00000366639|TSNAX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.4509105857	1	947.450911	946.443634	0.84808	0.00080351	0.38765	0.00036728	1.2357	0.0011708	947.4512775535314	31.765	0.096586	31.761	31.712	31.809	-0.0044155	279	106	1.4535767	0.06230247	1.4520572	295.34912	0	12.659088						436	5	4	NaN	NaN	NaN	0.12449	1	6857	6857		59.445	20.837	1	123390			29965	2117	17279	17759	23880	23880					-0.03172995259490108
VYDGHAGS	8	Unmodified	_VYDGHAGS_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A;nc|ENSG00000138032|O75688-5|PPM1B;ENST00000409486.6_1_2:44428329-44436483:+|nuORF;nc|ENSG00000138032|O75688-4|PPM1B;ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000138032|O75688-2|PPM1B;nc|ENSG00000100614|P35813-3|PPM1A;ENSG00000138032|ENST00000282412|PPM1B	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	805.3475081467001	1	805.347508	804.340232	1.8682	0.0015046	-4.6035	-0.0037074	-2.7353	-0.0022029	805.3441203185224	19.202	0.14419	19.188	19.14	19.284	-0.014141	498	46	1.3232021	0.026895046	1.3216827	269.5389	0	5.4785767						130	7	2	NaN	NaN	NaN	0.82332	1	4701	4701		6.0903	2.5171	1	9240.3			29966	1265	17280	17760	23881	23881					-0.06976482647280591
VYDIAAKF	8	Unmodified	_VYDIAAKF_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-MOB4|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.75273579795	2	463.752736	925.490919	1.1543	0.00053533	-1.2691	-0.00058855	-0.11476	-5.3221E-05	463.7520020370513	22.043	0.12059	22.043	22.019	22.139	0	1359	37	0.8006399	0.022191346	0.8006399	325.46106	0	9.020782						129	6	4	NaN	NaN	NaN	0.3042	1	6504	6504		41.785	13.118	1	12304			29967	19	17281	17761	23882	23882					0.025192840115209947
VYDIAAKF	8	Unmodified	_VYDIAAKF_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-MOB4|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	463.75273579795	2	463.752736	925.490919	0.58197	0.00026989	0.67239	0.00031183	1.2544	0.00058171	463.7529533595101	22.042	0.12043	22.029	22.005	22.125	-0.013731	1359	40	0.8006399	0.024039328	0.7991205	325.46103	0	9.772003						95	6	2	NaN	NaN	NaN	0.202	1	6377	6377		49.833	21.166	1	12324			29968	19	17281	17761	23883	23883					0.025192840115209947
VYDIPDLL	8	Unmodified	_VYDIPDLL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	947.5084254646	1	947.508425	946.501149	1.3173	0.0012482	0.58389	0.00055324	1.9012	0.0018014	947.5088297748106	32.394	0.14476	32.394	32.37	32.514	0	216	85	1.4908947	0.049738765	1.4908947	302.9314	0	10.106323						160	7	2	NaN	NaN	NaN	0.12876	1	7000	7000		58.599	31.868	1	16679			29969	1022	17282	17762	23884	23884					0.02575846946092497
VYDIPDLL	8	Unmodified	_VYDIPDLL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	947.5084254646	1	947.508425	946.501149	0.91964	0.00087137	0.37984	0.0003599	1.2995	0.0012313	947.5088109169884	32.393	0.14477	32.389	32.341	32.485	-0.0037613	216	85	1.4908947	0.04973352	1.4893752	302.9314	0	10.105255						196	7	3	NaN	NaN	NaN	0.27293	1	6870	6870		44.247	20.396	1	17131			29970	1022	17282	17762	23885	23885					0.02575846946092497
VYDITNQET	9	Unmodified	_VYDITNQET_					0	0	0		ENST00000549034.1_1_12:56383771-56384735:+|nuORF;ENSG00000111540|ENST00000360299|RAB5B	ENST00000549034.1_1_12:56383771-56384735:+|nuORF	ENST00000549034.1_1_12:56383771-56384735:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5000456228	1	1082.50005	1081.49277	1.1601	0.0012558	8.1914	0.0088672	9.3515	0.010123	1082.509034234883	29.377	0.072395	29.377	29.353	29.425	0	126	70	1.544062	0.04071617	1.544062	313.17206	0	8.258209						131	4	2	NaN	NaN	NaN	0.21199	1	12046	12046		24.562	1.4444	1	16986			29971	1812	17283	17763	23886	23886					-0.044717517611843505
VYDKFIDYYL	10	Unmodified	_VYDKFIDYYL_					0	0	0			REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	REV__tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.89206152530005	3	446.892062	1337.65436	1.4278	0.00063807	-1.0572	-0.00047246	0.37059	0.00016561	447.2259400214057	16.278	0.26403	16.278	16.182	16.446	0	1419	58	0.76361835	0.035222054	0.76361835	463.50937	0	21.379456						352	12	4	NaN	NaN	NaN	0.65442	1	19367	19367		6.1406	0	1	94546	+		29972	13514	17284	17764	23887	23887					-0.000965827280879239
VYDKSWSF	8	Unmodified	_VYDKSWSF_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.2452749066	2	516.245275	1030.476	1.2183	0.00062896	-6.2767	-0.0032403	-5.0583	-0.0026113	516.24247242711	26.529	0.096527	26.518	26.47	26.566	-0.010645	1308	61	0.83204526	0.036917448	0.8305259	337.72287	0	14.984619						141	5	3	NaN	NaN	NaN	0.7718	1	9586	9586		13.003	0	1	13290	+		29973	8861	17285	17765	23888	23888					-0.03802207856483619
VYDLITKVQ	9	Unmodified	_VYDLITKVQ_					0	0	0			REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.8107819931	2	539.810782	1077.60701	1.1391	0.00061491	-0.3864	-0.00020858	0.75273	0.00040633	539.8108381079137	24.695	0.096466	24.682	24.658	24.755	-0.012392	1206	43	0.894683	0.025747418	0.89316356	362.9377	0	10.444733						116	5	3	NaN	NaN	NaN	0.026469	1	11569	11569		63.731	5.5309	1	14338	+		29974	13392	17286	17766	23889	23889					0.0713118279156788
VYDLITKVQ	9	Unmodified						0	0	0			REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	REV__tr|U7SHE9|U7SHE9_FUSNUAldehydedehydrogenasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02287PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	539.810782	1077.60701	1.1391	0.00061491	-0.3864	-0.00020858	0.75273	0.00040633	539.8108381079137	24.695	0.096466	24.682	24.658	24.755	-0.012392	1206	43	0.894683	0.025747418	0.89316356	362.9377		10.444733	-0.0062799	0.00085233	0.00015978	NaN	63.731	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14338	+		29975	13392	17286	17766							0.0713118279156788
VYDLLKTNL	9	Unmodified	_VYDLLKTNL_					0	0	0		PSMD1-ATP2C1|1|fusion;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	PSMD1-ATP2C1|1|fusion	PSMD1-ATP2C1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.8107819931	2	539.810782	1077.60701	1.4759	0.00079668	-1.9485	-0.0010518	-0.47262	-0.00025513	539.8098211139345	24.695	0.12065	24.695	24.671	24.791	0	1209	52	0.892844	0.03126979	0.892844	362.1917	0	12.684937						133	6	3	NaN	NaN	NaN	0.38313	1	11873	11873		14.425	2.3763	1	15922			29976	8107	17287	17767	23890	23890					0.0713118279156788
VYDLNINKMA	10	Unmodified	_VYDLNINKMA_					0	0	0			REV__tr|U7SWR4|U7SWR4_FUSNUtRNA(Ile)-lysidine/2-thiocytidinesynthaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01146PE=4SV=1	REV__tr|U7SWR4|U7SWR4_FUSNUtRNA(Ile)-lysidine/2-thiocytidinesynthaseN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01146PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.8051736864501	2	590.805174	1179.59579	1.5305	0.00090423	-3.426	-0.0020241	-1.8955	-0.0011199	590.8034204857507	29.546	0.21719	29.546	29.498	29.715	0	1182	73	0.9093879	0.044095516	0.9093879	368.50006	0	17.868286						427	10	4	NaN	NaN	NaN	0.5358	1	15815	15815		17.97	0	1	81648	+		29977	13544	17288	17768	23891	23891					0.01318037425789953
VYDLSIRGF	9	Unmodified	_VYDLSIRGF_					0	0	0		ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN	ENST00000498545.5_1_2:122513336-122522940:+|nuORF	ENST00000498545.5_1_2:122513336-122522940:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2874740723	2	535.287474	1068.5604	2.1199	0.0011347	0.88521	0.00047384	3.0051	0.0016086	535.2876854010766	25.346	0.16889	25.346	25.298	25.467	0	1194	37	0.902037	0.02205491	0.902037	365.96005	0	8.947784						142	8	3	NaN	NaN	NaN	0.070055	1	11500	11500		40.154	19.598	1	23812			29978	5948	17289	17769	23892	23892					0.028857429602794582
VYDLSIRGF	9	Unmodified	_VYDLSIRGF_					0	0	0		ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN	ENST00000498545.5_1_2:122513336-122522940:+|nuORF	ENST00000498545.5_1_2:122513336-122522940:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2874740723	2	535.287474	1068.5604	1.453	0.00077777	0.8615	0.00046115	2.3145	0.0012389	535.287669291768	25.346	0.072376	25.334	25.334	25.407	-0.012011	1194	34	0.902037	0.020215929	0.9005176	365.96005	0	8.201691						74	4	2	NaN	NaN	NaN	0.40649	1	11220	11220		13.463	1.4144	1	17902			29979	5948	17289	17769	23893	23893					0.028857429602794582
VYDNIGIL	8	Unmodified	_VYDNIGIL_					0	0	0		ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	906.4931097514001	1	906.49311	905.485833	2.0542	0.0018621	0.52613	0.00047693	2.5804	0.0023391	906.4931355710833	28.146	0.072382	28.146	28.122	28.194	0	300	46	1.4411188	0.026706696	1.4411188	293.00775	0	5.4299927						90	4	2	NaN	NaN	NaN	0.55996	1	6175	6175		27.789	4.4544	1	7331			29980	1818	17290	17770	23894	23894					0.029309801489034726
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.28185737815	2	541.281857	1080.54916	1.1968	0.00064779	-1.6182	-0.00087588	-0.42139	-0.00022809	541.2810724009647	31.621	0.26551	31.621	31.573	31.839	0	1221	85	0.885486	0.051550567	0.885486	359.19452	0	20.911285						499	12	4	NaN	NaN	NaN	0.030261	1	12009	12009		75.698	49.584	1	141570			29981	1194	17291	17771	23895	23895					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5564382896998	1	1081.55644	1080.54916	0.75023	0.00081142	-0.95906	-0.0010373	-0.20883	-0.00022586	1081.5552593310795	31.621	0.12068	31.621	31.573	31.694	0	75	82	1.5741152	0.04770124	1.5741152	319.27112	0	9.675018						266	6	3	NaN	NaN	NaN	0.019716	1	12010	12010		89.374	50.334	1	35090			29982	1194	17291	17771	23896	23896					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.28185737815	2	541.281857	1080.54916	0.80203	0.00043413	-1.1651	-0.00063065	-0.36307	-0.00019652	541.2813769390176	31.62	0.21726	31.616	31.568	31.785	-0.0044155	1218	88	0.8873258	0.053388774	0.8858064	359.94083	0	21.656952						487	10	5	NaN	NaN	NaN	0.050761	1	11693	11693		60.982	24.395	1	137740			29983	1194	17291	17771	23897	23897					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1081.5564382896998	1	1081.55644	1080.54916	0.88662	0.00095893	-0.85439	-0.00092407	0.032236	3.4865E-05	1081.5554577016442	31.62	0.16894	31.616	31.592	31.761	-0.0044155	69	88	1.5776473	0.051240087	1.5761279	319.98752	0	10.392792						228	8	2	NaN	NaN	NaN	0.10206	1	11695	11695		47.482	17.883	1	28771			29984	1194	17291	17771	23898	23898					0.012109208661286175
VYDPLRQY	8	Unmodified	_VYDPLRQY_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5363715495998	1	1053.53637	1052.5291	1.2079	0.0012726	-10.827	-0.011406	-9.6189	-0.010134	1053.5260052308467	38.972	0.12013	38.972	38.924	39.044	0	153	52	1.5281296	0.030107379	1.5281296	310.04813	0	6.1085815						128	6	2	NaN	NaN	NaN	0.57691	1	10736	10736		26.732	0	1	9769.2	+		29985	9824	17292	17772	23899	23899					0.004931699261760514
VYDPSLKTLL	10	Unmodified	_VYDPSLKTLL_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8317144004501	2	574.831714	1147.64888	1.8291	0.0010514	-1.6815	-0.00096659	0.14755	8.4817E-05	574.8305122498999	25.371	0.072393	25.371	25.346	25.419	0	1179	43	0.9112251	0.025722384	0.9112251	369.3633	0	10.426544						68	4	2	NaN	NaN	NaN	0.28195	1	14739	14739		28.495	9.377	1	9082.7			29986	619	17293	17773	23900	23900					0.0809573848009677
VYDPSLKTLL	10	Unmodified						0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.831714	1147.64888	1.7273	0.00099288	0.22712	0.00013056	1.9544	0.0011234	574.8322739468477	25.37	0.072376	25.358	25.334	25.407	-0.012011	1179	46	0.9112251	0.027561188	0.90970564	369.3633		11.1719055	-0.0061304	0.00065357	-0.00075972	NaN	28.495	90	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9456.2			29987	619	17293	17773							0.0809573848009677
VYDTMIEKF	9	Unmodified	_VYDTMIEKF_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;PTPRZ1-TSPAN33|2|fusion	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.2810000984	2	573.281	1144.54745	1.4794	0.00084813	-3.4331	-0.0019681	-1.9537	-0.00112	573.2792645198375	23.272	0.048279	23.258	23.21	23.258	-0.013294	1200	88	0.89836043	0.053348422	0.896841	364.16037	0	21.625366						133	3	3	NaN	NaN	NaN	0.34922	1	14128	14128		15.822	2.8191	1	15472			29988	1593	17294	17774	23901	23901					-0.019044562141289134
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.7638318005	2	527.763832	1053.51311	1.8803	0.00099235	-2.3653	-0.0012483	-0.48505	-0.00025599	527.7623270518791	17.621	0.16779	17.621	17.597	17.765	0	1281	67	0.84864825	0.040582895	0.84864825	344.3626	0	16.46762						163	8	3	NaN	NaN	NaN	0.10945	1	10787	10787		34.454	14.005	1	17391			29989	3217	17295	17775	23902	23902					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7638318005	2	527.763832	1053.51311	1.4995	0.0007914	-3.6864	-0.0019455	-2.1869	-0.0011542	528.2629116066266	17.666	0.16777	17.652	17.604	17.772	-0.013786	1281	73	0.84864825	0.044267476	0.8471288	344.3626	0	17.962769						129	8	3	NaN	NaN	NaN	0.2961	1	10563	10563		19.164	5.122	1	15023			29990	3217	17295	17775	23903	23903					-0.011505363107289668
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.8659582251333	3	385.865958	1154.57605	1.2507	0.00048261	-2.0608	-0.0007952	-0.8101	-0.00031259	385.86511218242345	20.742	0.12048	20.742	20.718	20.838	0	1428	82	0.7580582	0.05008495	0.7580582	460.87854	0	30.450287						197	6	4	NaN	NaN	NaN	0.16171	1	14967	14967		36.235	18.653	1	46781			29991	5412	17296	17776	23904	23904					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2952991044	2	578.295299	1154.57605	1.0173	0.00058829	-2.1526	-0.0012448	-1.1353	-0.00065656	578.2931964402433	20.791	0.21678	20.776	20.704	20.921	-0.014086	1182	76	0.9093879	0.045960188	0.90786844	368.59235	0	18.62854						311	10	3	NaN	NaN	NaN	0.030669	1	14473	14473		58.235	13.597	1	57965			29992	5412	17296	17776	23905	23905					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.8659582251333	3	385.865958	1154.57605	1.0378	0.00040045	-1.0592	-0.0004087	-0.021377	-8.2486E-06	385.86554881147026	20.791	0.1686	20.776	20.752	20.921	-0.014086	1428	49	0.7580582	0.029662251	0.75653875	460.8785	0	18.033813						234	8	4	NaN	NaN	NaN	0.25448	1	14475	14475		19.336	4.0255	1	49438			29993	5412	17296	17776	23906	23906					0.004940294773177811
VYDVAMKL	8	Unmodified	_VYDVAMKL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	469.75442120714996	2	469.754421	937.494289	0.58922	0.00027679	-2.8871	-0.0013562	-2.2979	-0.0010794	469.7532256144004	22.163	0.096491	22.149	22.125	22.222	-0.013731	1347	28	0.8080346	0.016637146	0.8065152	328.4055	0	6.76178						61	5	3	NaN	NaN	NaN	0.65542	1	6632	6632		21.835	2.7167	1	4401.3			29994	4974	17297	17777	23907	23907					0.023042107938636036
VYDVAMKL	8	Unmodified						0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	469.754421	937.494289	1.4379	0.00067545	-2.383	-0.0011194	-0.94511	-0.00044397	469.75361649325004	22.163	0.072422	22.163	22.115	22.187	0	1350	31	0.80618626	0.018486738	0.80618626	327.65427		7.5134583	0.0070835	0.00033791	-0.00016447	NaN	21.835	52	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4001.1			29995	4974	17297	17777							0.023042107938636036
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3053324744501	2	556.305332	1110.59611	1.1854	0.00065944	-0.41873	-0.00023294	0.76666	0.0004265	556.3051732357143	27.011	0.19309	27.001	26.977	27.17	-0.010126	1230	106	0.8799654	0.064413846	0.878446	356.83353	0	26.12033						349	9	4	NaN	NaN	NaN	0.0092442	1	12939	12939		93.929	55.798	1	72919			29996	3684	17298	17778	23908	23908					0.0452378041729844
VYEAMVPLF	9	Unmodified	_VYEAMVPLF_					0	0	0		ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5434307623998	1	1068.54343	1067.53615	1.1141	0.0011904	-2.2479	-0.002402	-1.1338	-0.0012115	1068.5450593915757	33.48	0.14475	33.48	33.431	33.576	0	84	121	1.5688156	0.070732236	1.5688156	318.24515	0	14.348511						361	7	4	NaN	NaN	NaN	0.27442	1	11442	11442		20.555	6.5139	1	32398			29997	3128	17299	17779	23909	23909					0.005087664823804516
VYEEILHQI	9	Unmodified	_VYEEILHQI_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.3058637907001	2	572.305864	1142.59717	1.2389	0.00070904	-1.9674	-0.001126	-0.72848	-0.00041691	572.3045812338016	23.971	0.096519	23.958	23.934	24.03	-0.01305	1197	79	0.9001988	0.04777533	0.8986794	364.913	0	19.366669						133	5	2	NaN	NaN	NaN	0.48181	1	14072	14072		10.36	4.4404	1	16407			29998	2968	17300	17780	23910	23910					0.031579947861928304
VYEGIDAQH	9	Unmodified	_VYEGIDAQH_					0	0	0			REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.2432635339	2	516.243264	1030.47197	1.9657	0.0010148	-1.8899	-0.00097564	0.07584	3.9152E-05	516.2421861716555	26.505	0.12068	26.505	26.481	26.601	0	1314	67	0.8283535	0.04060048	0.8283535	336.2244	0	16.479523						145	6	2	NaN	NaN	NaN	0.23112	1	9785	9785		23.334	0	1	14136	+		29999	9540	17301	17781	23911	23911					-0.042042973502020686
VYEGIDAQH	9	Unmodified						0	0	0			REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.243264	1030.47197	1.9657	0.0010148	-1.8899	-0.00097564	0.07584	3.9152E-05	516.2421861716555	26.505	0.12068	26.505	26.481	26.601	0	1314	67	0.8283535	0.04060048	0.8283535	336.2244		16.479523	-0.0065887	0.00034544	-0.0010862	NaN	23.334	145	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14136	+		30000	9540	17301	17781							-0.042042973502020686
VYEGIDAQH	9	Unmodified						0	0	0			REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.243264	1030.47197	1.2183	0.00062896	-2.3805	-0.0012289	-1.1622	-0.00059997	516.24247242711	26.529	0.096527	26.518	26.47	26.566	-0.010645	1308	61	0.83204526	0.036917448	0.8305259	337.72287		14.984619	0.0065887	-0.00016113	0.0010862	NaN	23.334	141	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13290	+		30001	9540	17301	17781							-0.042042973502020686
VYEGPTDII	9	Unmodified	_VYEGPTDII_					0	0	0			REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.75821510634995	2	503.758215	1005.50188	1.2345	0.00062188	-2.3492	-0.0011834	-1.1147	-0.00056153	503.75645013531255	30.172	0.096523	30.166	30.142	30.238	-0.0064106	1356	28	0.8024889	0.016640782	0.8009695	325.8327	0	6.756592						61	5	2	NaN	NaN	NaN	0.36492	1	8622	8622		15.175	1.1338	1	5279.6	+		30002	13566	17302	17782	23912	23912					-0.0006535840486776578
VYEKGLYK	8	Unmodified	_VYEKGLYK_					0	0	0			REV__TF|p.E672K|1|0.25|ENSG00000091513|chr3:133777190-133777190|G/A|missense_variant	REV__TF|p.E672K|1|0.25|ENSG00000091513|chr3:133777190-133777190|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.27911772395004	2	500.279118	998.543683	1.3988	0.0006998	-6.5958	-0.0032998	-5.197	-0.0026	500.2762160686844	30.487	0.12066	30.487	30.439	30.56	0	1293	46	0.84127116	0.027668655	0.84127116	341.6115	0	11.235291						121	6	2	NaN	NaN	NaN	0.67593	1	8531	8531		20.555	4.1388	1	15359	+		30003	13371	17303	17783	23913	23913					0.04435242074339385
VYEKGLYK	8	Unmodified						0	0	0			REV__TF|p.E672K|1|0.25|ENSG00000091513|chr3:133777190-133777190|G/A|missense_variant	REV__TF|p.E672K|1|0.25|ENSG00000091513|chr3:133777190-133777190|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	500.279118	998.543683	1.3988	0.0006998	-6.5958	-0.0032998	-5.197	-0.0026	500.2762160686844	30.487	0.12066	30.487	30.439	30.56	0	1293	46	0.84127116	0.027668655	0.84127116	341.6115		11.235291	0.015437	-0.00052487	-0.0010848	NaN	20.555	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15359	+		30004	13371	17303	17783							0.04435242074339385
VYEKNGYIYF	10	Unmodified	_VYEKNGYIYF_					0	0	0		chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.3189711659501	2	648.318971	1294.62339	1.8804	0.0012191	-1.6569	-0.0010742	0.22343	0.00014485	648.3180248261867	23.754	0.16862	23.754	23.706	23.875	0	1086	76	0.9680805	0.045786977	0.9680805	391.8802	0	18.534607						364	8	4	NaN	NaN	NaN	0.032813	1	18676	18676		58.398	23.944	1	57387			30005	118	17304	17784	23914	23914					-0.012137360423366772
VYEKNGYIYF	10	Unmodified	_VYEKNGYIYF_					0	0	0		chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	chr11:102944366-102945646|492|463.6|0.39|10.22|-|2|MMP13,MMP13|1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.3189711659501	2	648.318971	1294.62339	1.7671	0.0011456	-1.0313	-0.00066859	0.73581	0.00047704	648.3182199993737	23.778	0.26515	23.765	23.693	23.958	-0.013048	1083	88	0.9699114	0.053107142	0.96839195	392.6213	0	21.497833						465	12	4	NaN	NaN	NaN	0.00098176	1	17836	17836		89.374	55.948	1	62890			30006	118	17304	17784	23915	23915					-0.012137360423366772
VYEKTQPSW	9	Unmodified	_VYEKTQPSW_					0	0	0		ENST00000217515.10_2_18:54283496-54285305:-|nuORF	ENST00000217515.10_2_18:54283496-54285305:-|nuORF	ENST00000217515.10_2_18:54283496-54285305:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2823886944001	2	569.282389	1136.55022	1.6908	0.00096251	-10.448	-0.0059481	-8.7577	-0.0049856	569.276627806989	15.246	0.1201	15.246	15.246	15.366	0	1239	43	0.87444305	0.025778055	0.87444305	354.4949	0	10.450287						121	6	2	NaN	NaN	NaN	0.35794	1	14333	14333		15.463	2.4598	1	16142			30007	6231	17305	17785	23916	23916					-0.012588647649408813
VYEKTQPSW	9	Unmodified						0	0	0		ENST00000217515.10_2_18:54283496-54285305:-|nuORF	ENST00000217515.10_2_18:54283496-54285305:-|nuORF	ENST00000217515.10_2_18:54283496-54285305:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.282389	1136.55022	3.2685	0.0018607	-3.8614	-0.0021982	-0.59295	-0.00033756	569.2795344492937	15.652	0.047973	15.639	15.615	15.663	-0.012611	1257	22	0.86339295	0.012896717	0.8618735	350.01523		5.228241	0.19679	0.0042929	-0.0062848	NaN	15.463	26	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1489.4			30008	6231	17305	17785							-0.012588647649408813
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.27710635125	2	554.277106	1106.53966	1.4195	0.00078677	0.29247	0.00016211	1.7119	0.00094889	554.2774008927429	22.91	0.07238	22.896	22.848	22.921	-0.01354	1242	64	0.87260187	0.038664997	0.8710824	353.86343	0	15.6796875						116	4	2	NaN	NaN	NaN	0.070055	1	12762	12762		40.154	19.598	1	34279			30009	4355	17306	17786	23917	23917					-0.009348474193984657
VYEQLQEPQ	9	Unmodified	_VYEQLQEPQ_					0	0	0		nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2773033165	2	567.277303	1132.54005	0.97667	0.00055404	-1.4045	-0.00079673	-0.4278	-0.00024268	567.7794033030417	28.532	0.14474	28.523	28.499	28.644	-0.0083485	1227	73	0.88180584	0.0441671	0.8802864	357.49487	0	17.905884						278	7	3	NaN	NaN	NaN	0.46215	1	13722	13722		11.17	2.2084	1	31934			30010	2316	17307	17787	23918	23918					-0.020914724902013404
VYEQLQEPQ	9	Unmodified						0	0	0		nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	nc|ENSG00000122224|Q9HBG7-3|LY9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.277303	1132.54005	1.6654	0.00094475	1.1947	0.0006777	2.8601	0.0016225	567.278273286728	28.822	0.16893	28.822	28.725	28.894	0	1218	49	0.8873258	0.029431999	0.8873258	359.73273		11.932068	0.14933	0.0010787	0.0035197	NaN	11.17	155	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15715			30011	2316	17307	17787							-0.020914724902013404
VYERAVEFF	9	Unmodified	_VYERAVEFF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2927564154501	2	580.292756	1158.57096	1.3347	0.00077451	-3.1069	-0.0018029	-1.7722	-0.0010284	580.2902538693719	24.502	0.21715	24.489	24.417	24.634	-0.012747	1206	88	0.894683	0.053325295	0.89316356	362.61743	0	21.612915						211	10	2	NaN	NaN	NaN	0.41766	1	14595	14595		13.003	1.8325	1	21207			30012	1316	17308	17788	23919	23919					-0.0019827438529773644
VYERAVEFF	9	Unmodified						0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.292756	1158.57096	1.4416	0.00083657	-2.1476	-0.0012463	-0.70602	-0.0004097	580.2910778250279	24.478	0.072367	24.478	24.454	24.526	0	1209	76	0.892844	0.045970082	0.892844	361.87207		18.631805	-0.0055858	0.00053215	-0.00015978	NaN	13.003	118	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14175			30013	1316	17308	17788							-0.0019827438529773644
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.8009455883	2	592.800946	1183.58734	1.7088	0.001013	-1.8933	-0.0011223	-0.18452	-0.00010939	592.8004021654696	19.828	0.2163	19.828	19.732	19.948	0	1203	70	0.8965218	0.042278767	0.8965218	363.27234	0	17.13144						330	10	4	NaN	NaN	NaN	0.034172	1	15958	15958		53.652	26.355	1	53008			30014	5854	17309	17789	23920	23920					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8009455883	2	592.800946	1183.58734	1.1494	0.00068134	-2.7392	-0.0016238	-1.5898	-0.00094244	592.7998614048164	19.851	0.2166	19.837	19.765	19.982	-0.014141	1206	67	0.894683	0.040451527	0.89316356	362.52725	0	16.391022						387	10	4	NaN	NaN	NaN	0.077759	1	15350	15350		39.039	18.484	1	55708			30015	5854	17309	17789	23921	23921					0.0028880678080440703
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3058637907	2	602.305864	1202.59717	2.1628	0.0013026	-4.5782	-0.0027575	-2.4155	-0.0014548	602.3048540188472	23.2	0.26517	23.2	23.152	23.417	0	1167	85	0.91857195	0.051422596	0.91857195	372.1393	0	20.832764						745	12	6	NaN	NaN	NaN	2.164E-05	1	16549	16549		145.7	94.874	1	355520			30016	2888	17310	17790	23922	23922					0.003979947861580513
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000134744|Q5TAX3|TUT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.3058637907	2	602.305864	1202.59717	1.8477	0.0011129	-3.9134	-0.0023571	-2.0657	-0.0012442	602.3053729076394	23.248	0.28954	23.234	23.162	23.451	-0.013294	1167	85	0.91857195	0.051422596	0.9170525	372.1393	0	20.832764						724	13	4	NaN	NaN	NaN	0.0089217	1	15895	15895		96.341	54.023	1	353130			30017	2888	17310	17790	23923	23923					0.003979947861580513
VYFGDPVSL	9	Unmodified	_VYFGDPVSL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5036744377002	1	996.503674	995.496398	1.9317	0.001925	-0.86862	-0.00086558	1.0631	0.0010594	996.5029202616211	29.063	0.16893	29.063	29.015	29.184	0	201	121	1.4997677	0.07103288	1.4997677	304.51907	0	14.422791						396	8	4	NaN	NaN	NaN	0.011942	1	8409	8409		87.021	54.568	1	84991			30018	2116	17311	17791	23924	23924					-0.001530371966509847
VYFGDPVSL	9	Unmodified	_VYFGDPVSL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.5036744377002	1	996.503674	995.496398	1.4795	0.0014743	-0.53109	-0.00052923	0.94839	0.00094508	996.5039688571662	29.062	0.21722	29.055	29.007	29.224	-0.0077209	198	115	1.5015416	0.06747401	1.5000222	304.87927	0	13.700226						389	10	5	NaN	NaN	NaN	0.0023856	1	8239	8239		109.86	70.94	1	85139			30019	2116	17311	17791	23925	23925					-0.001530371966509847
VYFGGFFI	8	Unmodified	_VYFGGFFI_					0	0	0		ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	949.4818167836	1	949.481817	948.47454	1.5564	0.0014778	-0.97325	-0.00092408	0.58319	0.00055373	949.4811177338444	36.398	0.096489	36.398	36.374	36.471	0	234	34	1.4802408	0.019537091	1.4802408	300.75772	0	3.969574						80	5	2	NaN	NaN	NaN	0.84651	1	7045	7045		1.6704	0	1	5003.5			30020	3974	17312	17792	23926	23926					-0.0017579715457713974
VYFGIAASL	9	Unmodified	_VYFGIAASL_					0	0	0		ENSG00000174886|ENST00000308961|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENSG00000174886|ENST00000308961|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	940.5138451935001	1	940.513845	939.506569	0.92397	0.00086901	0.75526	0.00071033	1.6792	0.0015793	940.5146046042926	30.777	0.12066	30.777	30.753	30.873	0	243	58	1.4749115	0.03376031	1.4749115	299.7158	0	6.8604126						114	6	2	NaN	NaN	NaN	0.22308	1	6816	6816		23.85	7.4338	1	12989			30021	4963	17313	17793	23927	23927					0.03439570528564673
VYFGIAASL	9	Unmodified	_VYFGIAASL_					0	0	0		ENSG00000174886|ENST00000308961|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENSG00000174886|ENST00000308961|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.5138451935001	1	940.513845	939.506569	1.5035	0.0014141	1.0858	0.0010212	2.5893	0.0024353	940.5144417711676	30.776	0.072344	30.77	30.746	30.818	-0.0057545	240	52	1.4766881	0.030200124	1.4751687	300.07684	0	6.136963						132	4	3	NaN	NaN	NaN	0.36886	1	6678	6678		15.013	6.7226	1	14601			30022	4963	17313	17793	23928	23928					0.03439570528564673
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.8608061909	2	649.860806	1297.70706	1.4901	0.00096835	-3.6677	-0.0023835	-2.1776	-0.0014152	649.8585805219578	28.75	0.12067	28.75	28.677	28.798	0	1098	61	0.960755	0.036631525	0.960755	388.90506	0	14.8280945						184	6	3	NaN	NaN	NaN	0.35694	1	18741	18741		37.231	26.061	1	19258			30023	2592	17314	17794	23929	23929					0.07011420125354562
VYFKNFIPF	9	Unmodified	_VYFKNFIPF_					0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.81841005995	2	587.81841	1173.62227	2.1484	0.0012629	-1.816	-0.0010675	0.33233	0.00019535	587.817285408006	30.246	0.19303	30.246	30.198	30.391	0	1146	103	0.93142134	0.06243503	0.93142134	377.45062	0	25.30127						386	9	2	NaN	NaN	NaN	0.062072	1	15612	15612		41.785	12.889	1	226740			30024	7828	17315	17795	23930	23930					0.042400943794064005
VYFKNFIPF	9	Unmodified						0	0	0		ITM2B-RB1|1|fusion;ITM2B-RB1|4|fusion;RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ENSG00000139687|ENST00000267163|RB1;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant	ITM2B-RB1|1|fusion	ITM2B-RB1|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.81841	1173.62227	1.2567	0.00073872	-2.0421	-0.0012004	-0.7854	-0.00046167	587.8171633868735	30.269	0.21714	30.263	30.19	30.407	-0.0064106	1146	100	0.93142134	0.060595453	0.9299019	377.45062		24.555786	0.0083844	-0.00010548	-0.00075972	NaN	41.785	717	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230330			30025	7828	17315	17795							0.042400943794064005
VYFKQQQYL	9	Unmodified	_VYFKQQQYL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.8216810304001	2	608.821681	1215.62881	1.1673	0.00071067	0.1581	9.6256E-05	1.3254	0.00080693	608.8216472919584	20.453	0.072166	20.439	20.415	20.487	-0.014143	1107	31	0.9552588	0.01832366	0.9537394	386.9551	0	7.422516						59	4	2	NaN	NaN	NaN	0.17818	1	16210	16210		26.732	11.269	1	5760.9			30026	5753	17316	17796	23931	23931					0.029619875401522222
VYFKQQQYL	9	Unmodified						0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	608.821681	1215.62881	1.0317	0.00062812	1.4826	0.00090265	2.5143	0.0015308	608.8218329003379	20.429	0.0721	20.429	20.405	20.477	0	1107	31	0.9552588	0.018321693	0.9552588	386.95508		7.4217224	-0.0050245	0.00087302	0.00075972	NaN	26.732	72	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5374.5			30027	5753	17316	17796							0.029619875401522222
VYFNAGEGHII	11	Unmodified	_VYFNAGEGHII_					0	0	0		tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3089377959001	2	610.308938	1218.60332	0.28179	0.00017198	-7.3957	-0.0045137	-7.1139	-0.0043417	610.3041373362753	35.553	0.21712	35.553	35.505	35.722	0.00052643	1146	70	0.93142134	0.04221946	0.9299019	377.28873	0	17.101746						416	10	5	NaN	NaN	NaN	0.51407	1	16266	16266		17.97	4.5066	1	70127			30028	13985	17317	17797	23932	23932					0.0027651301770674763
VYFNAGEGHII	11	Unmodified						0	0	0		tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	tr|U7T4I6|U7T4I6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00353PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	610.308938	1218.60332	0.63441	0.00038719	-7.7316	-0.0047187	-7.0972	-0.0043315	610.304274722916	35.554	0.28942	35.554	35.506	35.795	0	1146	70	0.93142134	0.04222405	0.93142134	377.28876		17.103607	0.0004743	-0.00017603	0.00075972	NaN	17.97	415	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71206			30029	13985	17317	17797							0.0027651301770674763
VYFNKAEIDL	10	Unmodified	_VYFNKAEIDL_					0	0	0			REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.5484062661667	3	404.548406	1210.62339	1.0562	0.00042728	4.3299	0.0017517	5.3861	0.002179	404.5502887777879	14.668	0.11975	14.656	14.56	14.68	-0.011738	1503	37	0.711653	0.022304714	0.71013355	432.42932	0	13.553253						118	6	2	NaN	NaN	NaN	0.5626	1	16064	16064		10.204	1.2622	1	13769	+		30030	13558	17318	17798	23933	23933					0.026502639576619913
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.3089377959001	2	640.308938	1278.60332	1.9189	0.0012287	-2.3821	-0.0015253	-0.46319	-0.00029658	640.3073206504745	25.057	0.19302	25.057	24.985	25.178	0	1140	82	0.93509084	0.049524605	0.93509084	378.576	0	20.050262						255	9	2	NaN	NaN	NaN	0.5626	1	18390	18390		16.858	4.2704	1	43408			30031	2062	17319	17799	23934	23934					-0.024834869822825567
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.3089377959001	2	640.308938	1278.60332	2.015	0.0012902	-2.1925	-0.0014038	-0.1775	-0.00011365	640.3078102319337	25.057	0.14472	25.045	24.996	25.141	-0.012011	1146	79	0.93142134	0.047692895	0.9299019	377.09036	0	19.308716						334	7	4	NaN	NaN	NaN	0.28195	1	17571	17571		28.495	10.526	1	40533			30032	2062	17319	17799	23935	23935					-0.024834869822825567
VYFPWVSQYRF	11	Unmodified	_VYFPWVSQYRF_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	746.3746120579	2	746.374612	1490.73467	0.93256	0.00069604	-1.633	-0.0012188	-0.70047	-0.00052281	746.374323817905	30.897	0.072348	30.897	30.873	30.946	0	1041	37	0.9955231	0.021933973	0.9955231	402.42874	0	8.866547						89	4	3	NaN	NaN	NaN	0.61402	1	20556	20556		13.101	8.3721	1	6843.4			30033	3148	17320	17800	23936	23936					0.00893323385594158
VYFPWVSQYRF	11	Unmodified	_VYFPWVSQYRF_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.3746120579	2	746.374612	1490.73467	1.4876	0.0011103	0.48067	0.00035876	1.9683	0.0014691	746.3755177869921	30.92	0.096529	30.915	30.891	30.988	-0.0050716	1038	43	0.997351	0.025592387	0.9958316	403.16766	0	10.345428						118	5	3	NaN	NaN	NaN	0.61402	1	19548	19548		13.101	7.407	1	8911.1			30034	3148	17320	17800	23937	23937					0.00893323385594158
VYFQARLYHTL	11	Unmodified	_VYFQARLYHTL_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.8800615765501	2	705.880062	1409.74557	1.3155	0.0009286	-0.71829	-0.00050703	0.59723	0.00042157	706.3808314255136	21.802	0.072201	21.802	21.778	21.85	0	996	40	1.0229213	0.023727298	1.0229213	413.72263	0	9.596558						121	4	3	NaN	NaN	NaN	1.7988E-06	1	20147	20147		103.78	83.335	1	16531			30035	1030	17321	17801	23938	23938					0.057087257599050645
VYFQARLYHTL	11	Unmodified	_VYFQARLYHTL_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.92246653990003	3	470.922467	1409.74557	0.13771	6.4853E-05	-0.16603	-7.8189E-05	-0.028319	-1.3336E-05	470.92258425658594	21.97	0.19266	21.956	21.86	22.053	-0.013895	1374	64	0.791392	0.03886217	0.7898726	480.11685	0	23.57666						265	9	3	NaN	NaN	NaN	0.64873	1	19196	19196		10.822	1.8187	1	24256			30036	1030	17321	17801	23939	23939					0.057087257599050645
VYFQARLYHTL	11	Unmodified						0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	470.922467	1409.74557	1.4339	0.00067526	-0.69384	-0.00032675	0.74007	0.00034852	471.2570972335163	21.802	0.14442	21.802	21.705	21.85	0	1374	67	0.791392	0.04071492	0.791392	480.11685		24.700684	-0.077266	-0.00039182	0.00075972	NaN	10.822	223	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32709			30037	1030	17321	17801							0.057087257599050645
VYFRIQDLEMF	11	Unmodified	_VYFRIQDLEMF_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	730.86576257055	2	730.865763	1459.71697	0.96236	0.00070336	-1.2066	-0.00088186	-0.24424	-0.00017851	730.8646872168523	31.911	0.21723	31.911	31.839	32.056	0	1014	49	1.0119673	0.029220164	1.0119673	409.1561	0	11.814209						242	10	4	NaN	NaN	NaN	0.025235	1	20425	20425		59.273	42.415	1	33848			30038	5082	17322	17802	23940	23940					0.005502400684463282
VYFRIQDLEMF	11	Unmodified	_VYFRIQDLEMF_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.86576257055	2	730.865763	1459.71697	0.7105	0.00051928	-2.6896	-0.0019658	-1.9791	-0.0014465	731.3652067477543	31.934	0.19303	31.93	31.858	32.051	-0.0037613	1011	55	1.0137935	0.032872558	1.012274	409.89447	0	13.290955						278	9	4	NaN	NaN	NaN	0.11462	1	19441	19441		38.269	27.909	1	34565			30039	5082	17322	17802	23941	23941					0.005502400684463282
VYFRIQDLEMF	11	Oxidation (M)	_VYFRIQDLEM(Oxidation (M))F_		VYFRIQDLEM(1)F		VYFRIQDLEM(86)F	0	0	1		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	738.8632198816	2	738.86322	1475.71189	1.3626	0.0010068	-2.323	-0.0017164	-0.96043	-0.00070963	738.8624256877465	29.521	0.26541	29.514	29.442	29.707	-0.0070648	1011	73	1.0137935	0.043839514	1.012274	409.85275	0	17.723328						549	12	4	NaN	NaN	NaN	0.00012321	1	19505	19505		85.824	59.093	1	74039			30040	5082	17322	17803	23942	23942		533			-0.006940637941852401
VYFSSVVLF	9	Unmodified	_VYFSSVVLF_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5713600724	1	1060.57136	1059.56408	2.0367	0.00216	-3.5585	-0.0037741	-1.5218	-0.001614	1060.5654371972626	34.662	0.19292	34.662	34.589	34.782	0	78	151	1.5723488	0.0884434	1.5723488	318.9925	0	17.943085						526	9	4	NaN	NaN	NaN	0.020004	1	11075	11075		71.993	43.326	1	98488			30041	2393	17323	17804	23943	23943					0.036684127341459316
VYFSSVVLF	9	Unmodified	_VYFSSVVLF_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5713600724	1	1060.57136	1059.56408	1.5666	0.0016615	-3.8316	-0.0040637	-2.265	-0.0024022	1060.5645366104268	34.636	0.26509	34.636	34.612	34.877	-0.0006485	78	130	1.5723488	0.076033115	1.5708294	318.9925	0	15.4253235						668	12	4	NaN	NaN	NaN	0.024986	1	10838	10838		65.672	26.754	1	107820			30042	2393	17323	17804	23944	23944					0.036684127341459316
VYFTNELKQF	10	Unmodified	_VYFTNELKQF_					0	0	0		ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENST00000466777.1_1_3:172236192-172241222:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.8322457167	2	644.832246	1287.64994	1.7486	0.0011275	-3.8006	-0.0024507	-2.052	-0.0013232	644.8305364605507	24.695	0.16892	24.695	24.671	24.84	0	1119	58	0.9479278	0.03482431	0.9479278	383.74426	0	14.097748						196	8	4	NaN	NaN	NaN	0.24484	1	18563	18563		31.675	4.9439	1	31134			30043	7116	17324	17805	23945	23945					0.017619528489831282
VYFTNELKQF	10	Unmodified	_VYFTNELKQF_					0	0	0		ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENST00000466777.1_1_3:172236192-172241222:-|nuORF	ENST00000466777.1_1_3:172236192-172241222:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.8322457167	2	644.832246	1287.64994	1.7352	0.0011189	-4.6542	-0.0030012	-2.919	-0.0018823	645.329860836251	24.719	0.14478	24.707	24.682	24.827	-0.012392	1116	61	0.94976085	0.036655188	0.9482414	384.48633	0	14.838898						167	7	2	NaN	NaN	NaN	0.24484	1	17735	17735		31.675	8.5579	1	44698			30044	7116	17324	17805	23946	23946					0.017619528489831282
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.29202813395	2	521.292028	1040.5695	1.2925	0.00067377	-1.4879	-0.00077564	-0.19542	-0.00010187	521.2908750466685	24.381	0.24116	24.381	24.357	24.598	0	1251	76	0.8670771	0.046069622	0.8670771	351.89706	0	18.697021						272	11	3	NaN	NaN	NaN	0.062072	1	10245	10245		41.785	22.5	1	58427			30045	621	17325	17806	23947	23947					0.05084136316600052
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		LAMC2-CCDC53|1|fusion;nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	LAMC2-CCDC53|1|fusion	LAMC2-CCDC53|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.29202813395	2	521.292028	1040.5695	1.3816	0.00072019	-1.5552	-0.00081073	-0.17368	-9.0536E-05	521.2909520526028	24.405	0.12065	24.393	24.368	24.489	-0.012747	1251	67	0.8670771	0.040534675	0.8655577	351.89706	0	16.450714						273	6	4	NaN	NaN	NaN	0.062072	1	10032	10032		41.785	18.45	1	57669			30046	621	17325	17806	23948	23948					0.05084136316600052
VYFVWCLA	8	Unmodified	_VYFVWCLA_					0	0	0			REV__ENST00000216068.8_1_22:39174586-39174781:-|nuORF	REV__ENST00000216068.8_1_22:39174586-39174781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.4960866393001	1	1000.49609	999.48881	1.5005	0.0015013	-0.058699	-5.8728E-05	1.4418	0.0014425	1000.4950294335166	26.939	0.096529	26.928	26.856	26.952	-0.010645	219	52	1.4891195	0.030177712	1.4876001	302.34055	0	6.127075						98	5	2	NaN	NaN	NaN	0.81214	1	8381	8381		7.5902	0	1	8108.8	+		30047	11456	17326	17807	23949	23949					-0.010954679979363391
VYGCWNLCVL	10	Unmodified	_VYGCWNLCVL_					0	0	0		ENST00000542851.5_1_6:161494450-161494501:+|nuORF	ENST00000542851.5_1_6:161494450-161494501:+|nuORF	ENST00000542851.5_1_6:161494450-161494501:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	390.5209171658333	3	390.520917	1168.54092	1.3758	0.00053729	8.2745	0.0032314	9.6504	0.0037687	390.52427275270367	11.142	0.1678	11.135	11.087	11.255	-0.0071888	1476	52	0.72837335	0.031565785	0.7268539	442.7686	0	19.188416						221	8	3	NaN	NaN	NaN	0.62764	1	14900	14900		7.1304	2.1135	1	20502			30048	7507	17327	17808	23950	23950					-0.03660672646515195
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.2401895287001	2	538.24019	1074.46583	2.1389	0.0011513	-0.87784	-0.00047249	1.2611	0.00067877	538.2402026487757	26.288	0.16895	26.288	26.263	26.432	0	1317	70	0.8265074	0.042448223	0.8265074	335.2939	0	17.220245						200	8	3	NaN	NaN	NaN	0.18779	1	11735	11735		26.115	14.567	1	21482			30049	1888	17328	17809	23951	23951					-0.06842815581717332
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.4731025908	1	1075.4731	1074.46583	2.056	0.0022111	-0.065322	-7.0252E-05	1.9906	0.0021409	1075.4733205768644	26.288	0.19306	26.288	26.215	26.408	0	156	103	1.5263584	0.060249925	1.5263584	309.6069	0	12.22113						337	9	4	NaN	NaN	NaN	0.011206	1	11736	11736		89.256	46.938	1	39801			30050	1888	17328	17809	23952	23952					-0.06842815581717332
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.4731025908	1	1075.4731	1074.46583	1.8825	0.0020245	-0.24068	-0.00025885	1.6418	0.0017657	1075.472867414543	26.287	0.19302	26.276	26.252	26.445	-0.011137	156	73	1.5263584	0.042511344	1.5248389	309.6069	0	8.623016						332	9	4	NaN	NaN	NaN	0.0073225	1	11431	11431		97.85	49.199	1	38638			30051	1888	17328	17809	23953	23953					-0.06842815581717332
VYGDFQEAF	9	Unmodified						0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	538.24019	1074.46583	1.4378	0.00077388	-0.64258	-0.00034586	0.79522	0.00042802	538.2400566993028	26.287	0.16889	26.276	26.252	26.421	-0.011137	1317	76	0.8265074	0.0461244	0.82498795	335.2939		18.711578	-0.005678	0.00014184	-0.00075972	NaN	26.115	208	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22737			30052	1888	17328	17809							-0.06842815581717332
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.7823589046501	2	536.782359	1071.55016	1.9498	0.0010466	-2.171	-0.0011654	-0.22127	-0.00011877	536.7812934764419	24.623	0.33768	24.623	24.478	24.816	0	1251	82	0.8670771	0.049728274	0.8670771	351.7642	0	20.174225						635	15	4	NaN	NaN	NaN	0.01047	1	11631	11631		91.429	60.637	1	225990			30053	6549	17329	17810	23954	23954					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.7823589046501	2	536.782359	1071.55016	1.3164	0.00070661	-0.78238	-0.00041997	0.53401	0.00028665	536.7821461500839	24.647	0.2412	24.634	24.586	24.827	-0.012394	1251	100	0.8670771	0.06077242	0.8655577	351.7642	0	24.654724						510	11	4	NaN	NaN	NaN	0.03623	1	11330	11330		52.758	20.305	1	199840			30054	6549	17329	17810	23955	23955					0.017251800257099603
VYGFLTFGTEV	11	Unmodified	_VYGFLTFGTEV_					0	0	0		ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8135216473	2	616.813522	1231.61249	0.34941	0.00021552	-8.7873	-0.0054201	-8.4379	-0.0052046	616.8091239034605	33.285	0.096512	33.283	33.235	33.331	-0.0024757	1152	55	0.92775106	0.03303951	0.9262317	375.75757	0	13.381683						108	5	2	NaN	NaN	NaN	0.44477	1	16590	16590		20.449	8.4	1	12156			30055	4493	17330	17811	23956	23956					0.005948615833858639
VYGFPVNQL	9	Unmodified	_VYGFPVNQL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.7767422105001	2	518.776742	1035.53893	1.7054	0.00088472	-3.5345	-0.0018336	-1.8291	-0.00094889	518.7749596586498	28.508	0.1207	28.508	28.46	28.581	0	1284	61	0.8468043	0.036869586	0.8468043	343.6913	0	14.964203						173	6	3	NaN	NaN	NaN	0.36492	1	10015	10015		15.175	6.8851	1	16159			30056	3461	17331	17812	23957	23957					0.022583579315551106
VYGFPVNQL	9	Unmodified	_VYGFPVNQL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.5462079544	1	1036.54621	1035.53893	1.8878	0.0019568	-0.34867	-0.00036141	1.5392	0.0015954	1036.5454199505732	28.508	0.16897	28.508	28.436	28.605	0	177	139	1.5139546	0.08149743	1.5139546	307.23727	0	16.538818						505	8	3	NaN	NaN	NaN	1.0815E-11	1	10017	10017		143.64	104.72	1	116130			30057	3461	17331	17812	23958	23958					0.022583579315551106
VYGFPVNQL	9	Unmodified	_VYGFPVNQL_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5462079544	1	1036.54621	1035.53893	1.2613	0.0013074	-0.24252	-0.00025139	1.0188	0.001056	1036.5461158461428	28.507	0.19301	28.499	28.427	28.62	-0.0083485	177	103	1.5139546	0.060256362	1.5124352	307.23727	0	12.22821						569	9	5	NaN	NaN	NaN	1.433E-07	1	9807	9807		136.23	93.914	1	109020			30058	3461	17331	17812	23959	23959					0.022583579315551106
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.87344715066666	3	413.873447	1238.59851	1.7442	0.00072187	-2.7365	-0.0011325	-0.99228	-0.00041068	413.8724844784657	22.453	0.28922	22.453	22.405	22.694	0	1437	58	0.7524962	0.035237312	0.7524962	457.1311	0	21.406189						340	13	4	NaN	NaN	NaN	0.049695	1	17494	17494		33.425	21.686	1	83610			30059	5046	17332	17813	23960	23960					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.3065324927001	2	620.306532	1238.59851	1.468	0.0009106	-2.1943	-0.0013611	-0.72628	-0.00045052	620.3051847700789	22.453	0.24097	22.453	22.429	22.67	0	1119	79	0.9479278	0.047692895	0.9479278	383.90552	0	19.315369						289	11	4	NaN	NaN	NaN	0.014943	1	17495	17495		78.398	46.722	1	42885			30060	5046	17332	17813	23961	23961					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	413.87344715066666	3	413.873447	1238.59851	1.2078	0.00049986	-2.4738	-0.0010238	-1.266	-0.00052396	413.8723547793411	22.597	0.26538	22.583	22.487	22.752	-0.01354	1437	43	0.7524962	0.025960147	0.75097674	457.1311	0	15.770416						262	12	2	NaN	NaN	NaN	0.056143	1	16759	16759		45.165	27.195	1	83058			30061	5046	17332	17813	23962	23962					-0.011243263343885701
VYGFQWRHF	9	Unmodified	_VYGFQWRHF_					0	0	0		nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF	nc|ENSG00000176890|P04818-2|TYMS	nc|ENSG00000176890|P04818-2|TYMS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.3065324927001	2	620.306532	1238.59851	0.82891	0.00051418	-1.486	-0.00092179	-0.6571	-0.0004076	620.3051689082229	22.573	0.24123	22.559	22.511	22.752	-0.01354	1119	40	0.9479278	0.023832321	0.94640833	383.90552	0	9.651978						241	11	3	NaN	NaN	NaN	0.074859	1	16760	16760		39.459	24.605	1	37493			30062	5046	17332	17813	23963	23963					-0.011243263343885701
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.2900167612501	2	527.290017	1052.56548	2.0131	0.0010615	-1.1444	-0.00060344	0.86865	0.00045803	527.2895154336875	22.814	0.21697	22.814	22.79	23.007	0	1248	58	0.8689189	0.034993947	0.8689189	352.59207	0	14.199951						304	10	4	NaN	NaN	NaN	0.026469	1	10752	10752		63.731	5.4951	1	110050			30063	4558	17333	17814	23964	23964					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.2900167612501	2	527.290017	1052.56548	1.3811	0.00072823	-1.2913	-0.00068089	0.08978	4.734E-05	527.2892998696345	22.886	0.21696	22.872	22.824	23.041	-0.01354	1248	52	0.8689189	0.031313777	0.86739945	352.59207	0	12.7065735						290	10	4	NaN	NaN	NaN	0.030696	1	10524	10524		58.2	18.741	1	109220			30064	4558	17333	17814	23965	23965					0.04130046822888289
VYGGAGGHG	9	Unmodified	_VYGGAGGHG_					0	0	0		CON__Q9D312	CON__Q9D312	CON__Q9D312	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	774.3529278756001	1	774.352928	773.345651	1.8022	0.0013956	1.7307	0.0013402	3.5329	0.0027357	774.3540699438995	29.811	0.096518	29.811	29.739	29.836	0	549	46	1.292695	0.02693808	1.292695	263.50165	0	5.491028						86	5	2	NaN	NaN	NaN	0.58547	1	4402	4402		6.0903	2.937	1	5745.4		+	30065	225	17334	17815	23966	23966					-0.05008759064799051
VYGGSGAG	8	Unmodified	_VYGGSGAG_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.15592858305	2	334.155929	666.297304	1.5507	0.00051818	3.2925	0.0011002	4.8433	0.0016184	334.15722530342225	29.039	0.14478	29.039	29.015	29.16	0	1524	67	0.698637	0.040905297	0.698637	285.60672	0	16.72232						168	7	2	NaN	NaN	NaN	0.84876	1	2475	2475		0.39566	0	1	19993	+		30066	11068	17335	17816	23967	23967					-0.049192527047011936
VYGHGSGL	8	Unmodified	_VYGHGSGL_					0	0	0			REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	789.3889790309	1	789.388979	788.381703	1.6441	0.0012979	-5.4001	-0.0042628	-3.756	-0.0029649	789.3852547549425	26.988	0.24131	26.988	26.94	27.181	0	519	94	1.310647	0.055642366	1.310647	267.07214	0	11.338318						408	11	3	NaN	NaN	NaN	0.50567	1	4605	4605		30.791	9.8386	1	52913	+		30067	11862	17336	17817	23968	23968					-0.02095301887959522
VYGHGSGL	8	Unmodified						0	0	0			REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	789.388979	788.381703	1.6441	0.0012979	-5.4001	-0.0042628	-3.756	-0.0029649	789.3852547549425	26.988	0.24131	26.988	26.94	27.181	0	519	94	1.310647	0.055642366	1.310647	267.07214		11.338318	-0.0066122	2.8906E-05	0.00075972	NaN	30.791	408	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52913	+		30068	11862	17336	17817							-0.02095301887959522
VYGHGSGL	8	Unmodified						0	0	0			REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	REV__ENST00000367137.3_1_1:205759622-205759775:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	789.388979	788.381703	1.3629	0.0010758	-5.4704	-0.0043183	-4.1075	-0.0032425	789.3851765991136	27.011	0.1931	27.001	26.929	27.122	-0.010126	519	88	1.310647	0.05204153	1.3091276	267.07214		10.604553	0.0066122	-2.6601E-05	-0.00075972	NaN	30.791	335	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46642	+		30069	11862	17336	17817							-0.02095301887959522
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		nc|ENSG00000142920|Q96A70-5|AZIN2;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2;ADC-ISOC1|1|fusion	nc|ENSG00000142920|Q96A70-5|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.81332468205	2	579.813325	1157.6121	1.5962	0.00092548	-3.0478	-0.0017672	-1.4516	-0.00084168	579.8111539466635	36.421	0.096352	36.422	36.398	36.494	0.0016747	1173	49	0.91489893	0.029381156	0.9133795	370.8146	0	11.908386						112	5	2	NaN	NaN	NaN	0.66626	1	14575	14575		10.36	1.237	1	12055			30070	10	17337	17818	23969	23969					0.039594866541847296
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3087408306501	2	567.308741	1132.60293	1.8286	0.0010374	-4.6586	-0.0026429	-2.83	-0.0016055	567.3069619779386	21.44	0.16875	21.44	21.416	21.585	0	1179	64	0.9112251	0.038589835	0.9112251	369.42157	0	15.644806						234	8	3	NaN	NaN	NaN	0.048791	1	14195	14195		53.14	29.806	1	51511			30071	3407	17338	17819	23970	23970					0.04193138088521664
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.54158604263336	3	378.541586	1132.60293	1.5965	0.00060435	-3.3092	-0.0012527	-1.7127	-0.00064834	378.5405209721358	21.44	0.16875	21.44	21.416	21.585	0	1455	49	0.7413668	0.029688	0.7413668	450.83368	0	18.05362						210	8	3	NaN	NaN	NaN	0.071077	1	14196	14196		40.006	26.543	1	61291			30072	3407	17338	17819	23971	23971					0.04193138088521664
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3087408306501	2	567.308741	1132.60293	1.4118	0.00080095	-2.1995	-0.0012478	-0.78771	-0.00044688	567.307602957219	21.537	0.19272	21.523	21.475	21.667	-0.014004	1182	73	0.9093879	0.044119358	0.90786844	368.67673	0	17.886536						225	9	2	NaN	NaN	NaN	0.25151	1	13745	13745		24.4	3.9516	1	47918			30073	3407	17338	17819	23972	23972					0.04193138088521664
VYGIRLEHF	9	Unmodified	_VYGIRLEHF_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.54158604263336	3	378.541586	1132.60293	1.6957	0.00064191	-0.55339	-0.00020948	1.1424	0.00043243	378.5407697002657	21.537	0.28906	21.523	21.45	21.739	-0.014004	1455	64	0.7413668	0.03895074	0.73984736	450.83365	0	23.686401						324	13	3	NaN	NaN	NaN	0.10206	1	13746	13746		35.523	15.931	1	64820			30074	3407	17338	17819	23973	23973					0.04193138088521664
VYGLYTSFF	9	Unmodified	_VYGLYTSFF_					0	0	0		SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant;ENSG00000155850|ENST00000286298|SLC26A2	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1096.5349745661	1	1096.53497	1095.5277	1.207	0.0013235	0.020529	2.2511E-05	1.2275	0.001346	1096.5361536249538	33.383	0.14482	33.383	33.335	33.48	0	105	76	1.5564433	0.04419124	1.5564433	315.63235	0	8.961578						346	7	4	NaN	NaN	NaN	0.011687	1	12643	12643		87.795	40.754	1	42700			30075	3891	17339	17820	23974	23974					-0.016244641625689837
VYGLYTSFF	9	Unmodified	_VYGLYTSFF_					0	0	0		SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant;ENSG00000155850|ENST00000286298|SLC26A2	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	SLC26A2|p.I291Kfs*12|1|0.06|ENSG00000155850|chr5:149980463-149980464|-/AAGGAAGGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.5349745661	1	1096.53497	1095.5277	1.0652	0.001168	0.67706	0.00074242	1.7423	0.0019105	1096.5359925092814	33.382	0.19304	33.38	33.259	33.452	-0.0018501	102	82	1.5582114	0.0477165	1.556692	315.9909	0	9.676453						320	9	4	NaN	NaN	NaN	0.014943	1	12319	12319		78.398	36.938	1	39767			30076	3891	17339	17820	23975	23975					-0.016244641625689837
VYGNERFIQYL	11	Unmodified	_VYGNERFIQYL_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.3617016479002	2	701.361702	1400.70885	1.6301	0.0011433	-1.2991	-0.00091113	0.33103	0.00023217	701.3602658078548	25.539	0.26535	25.539	25.515	25.781	0	1047	64	0.99186665	0.03839469	0.99186665	401.18762	0	15.529816						381	12	5	NaN	NaN	NaN	3.3034E-11	1	20069	20069		106.32	61.678	1	56413			30077	818	17340	17821	23976	23976					0.024524291433408507
VYGNERFIQYL	11	Unmodified	_VYGNERFIQYL_					0	0	0		nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-4|PICALM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	701.3617016479002	2	701.361702	1400.70885	1.5846	0.0011114	-2.702	-0.0018951	-1.1174	-0.0007837	701.8608319207759	25.563	0.26539	25.552	25.503	25.769	-0.011602	1047	61	0.99186665	0.036568403	0.9903472	401.18762	0	14.791107						314	12	4	NaN	NaN	NaN	0.025235	1	19125	19125		59.273	28.663	1	52506			30078	818	17340	17821	23977	23977					0.024524291433408507
VYGNGMIA	8	Unmodified	_VYGNGMIA_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.3971008762	1	824.397101	823.389824	1.9276	0.0015891	7.6536	0.0063096	9.5813	0.0078988	824.4039543896416	19.276	0.11999	19.276	19.252	19.372	0	486	58	1.3303722	0.03404522	1.3303722	270.89417	0	6.9324036						121	6	2	NaN	NaN	NaN	0.81807	1	5064	5064		6.794	0	1	9682.4	+		30079	11256	17341	17822	23978	23978					-0.028934909628333116
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.5196588529001	1	1007.51966	1006.51238	2.4015	0.0024196	-0.30268	-0.00030495	2.0989	0.0021146	1007.5192772355481	26.505	0.21721	26.505	26.456	26.674	0	192	211	1.5050892	0.12437379	1.5050892	305.5539	0	25.249603						1202	10	5	NaN	NaN	NaN	7.4733E-08	1	8841	8841		138.77	71.619	1	680420			30080	2692	17342	17823	23979	23979					0.009386690402379827
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.5196588529001	1	1007.51966	1006.51238	2.1805	0.0021969	0.2248	0.00022649	2.4053	0.0024233	1007.5201586607099	26.529	0.19303	26.518	26.47	26.663	-0.010645	189	199	1.5068626	0.11722922	1.5053432	305.91394	0	23.799164						997	9	5	NaN	NaN	NaN	7.4733E-08	1	8669	8669		138.77	69.54	1	661310			30081	2692	17342	17823	23980	23980					0.009386690402379827
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.26346765975	2	486.263468	970.512382	1.8796	0.00091399	-2.5233	-0.001227	-0.64364	-0.00031298	486.262121397365	19.997	0.12017	19.997	19.972	20.093	0	1311	70	0.83019954	0.04247582	0.83019954	337.24796	0	17.25476						157	6	3	NaN	NaN	NaN	0.29341	1	7619	7619		19.336	3.8738	1	22871			30082	3868	17343	17824	23981	23981					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	486.26346765975	2	486.263468	970.512382	1.5764	0.00076656	-2.1552	-0.001048	-0.57873	-0.00028142	486.262485233245	20.02	0.16852	20.006	19.982	20.15	-0.014141	1311	40	0.83019954	0.023997664	0.8286801	337.24796	0	9.748444						183	8	3	NaN	NaN	NaN	0.37272	1	7478	7478		14.854	1.1169	1	24308			30083	3868	17343	17824	23982	23982					0.025946690402406603
VYGSIFSFF	9	Unmodified	_VYGSIFSFF_					0	0	0		ENST00000508453.1_1_4:108852799-108857674:+|nuORF;nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF;ENSG00000155016|ENST00000332884|CYP2U1	ENST00000508453.1_1_4:108852799-108857674:+|nuORF	ENST00000508453.1_1_4:108852799-108857674:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5244098797998	1	1066.52441	1065.51713	0.9728	0.0010375	1.0153	0.0010829	1.9881	0.0021204	1066.5253154190193	38.083	0.12013	38.083	38.059	38.179	0	120	55	1.5476005	0.031842947	1.5476005	313.94907	0	6.459717						154	6	2	NaN	NaN	NaN	0.023074	1	11364	11364		68.108	23.806	1	16145			30084	3865	17344	17825	23983	23983					-0.013004468170265682
VYGSIFSFF	9	Unmodified	_VYGSIFSFF_					0	0	0		ENST00000508453.1_1_4:108852799-108857674:+|nuORF;nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF;ENSG00000155016|ENST00000332884|CYP2U1	ENST00000508453.1_1_4:108852799-108857674:+|nuORF	ENST00000508453.1_1_4:108852799-108857674:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5244098797998	1	1066.52441	1065.51713	1.3628	0.0014535	0.47676	0.00050848	1.8396	0.001962	1066.5252766490667	38.081	0.14425	38.084	38.036	38.18	0.0034256	120	49	1.5476005	0.028301835	1.5460811	313.94907	0	5.7413635						169	7	2	NaN	NaN	NaN	0.023074	1	11101	11101		68.108	23.806	1	16672			30085	3865	17344	17825	23984	23984					-0.013004468170265682
VYGSLSKDYD	10	Unmodified	_VYGSLSKDYD_					0	0	0		tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	tr|U7SNW6|U7SNW6_FUSNUdTDP-glucose4,6-dehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01963PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1146.5313457511998	1	1146.53135	1145.52407	1.7835	0.0020449	-6.7159	-0.0077	-4.9323	-0.0056551	1146.5230976120413	32.175	0.07238	32.172	32.172	32.244	-0.0037613	69	46	1.5776473	0.026489496	1.5761279	319.75854	0	5.3688965						96	4	2	NaN	NaN	NaN	0.47601	1	14155	14155		20.449	2.6497	1	7334			30086	13795	17345	17826	23985	23985					-0.04287178727099672
VYGSSMFVF	9	Unmodified	_VYGSSMFVF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4808305056	1	1036.48083	1035.47355	1.1101	0.0011506	1.3815	0.0014319	2.4916	0.0025825	1036.4818739306595	31.887	0.16895	31.887	31.815	31.983	0	156	58	1.5263584	0.033656597	1.5263584	309.7547	0	6.8301697						205	8	3	NaN	NaN	NaN	0.094712	1	10000	10000		36.586	21.411	1	23346			30087	1173	17346	17827	23986	23986					-0.042763795858036246
VYGSSMFVF	9	Unmodified	_VYGSSMFVF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4808305056	1	1036.48083	1035.47355	0.58841	0.00060987	0.76121	0.00078898	1.3496	0.0013989	1036.4823218777562	31.862	0.1689	31.857	31.833	32.002	-0.0044155	153	52	1.5281296	0.030110598	1.5266101	310.11414	0	6.1105347						172	8	2	NaN	NaN	NaN	0.032417	1	9789	9789		55.947	26.349	1	24636			30088	1173	17346	17827	23987	23987					-0.042763795858036246
VYGSSMFVF	9	Oxidation (M)	_VYGSSM(Oxidation (M))FVF_		VYGSSM(1)FVF		VYGSSM(47)FVF	0	0	1		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4757451276998	1	1052.47575	1051.46847	1.2827	0.00135	2.3456	0.0024687	3.6283	0.0038187	1052.4780259919512	27.952	0.16891	27.943	27.87	28.039	-0.009552	150	70	1.5299006	0.04074216	1.5283811	310.41144	0	8.266449						304	8	3	NaN	NaN	NaN	0.049695	1	10457	10457		47.04	24.914	1	30141			30089	1173	17346	17828	23988	23988		127			-0.055206834484124556
VYGTAFLVL	9	Unmodified	_VYGTAFLVL_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5607953861	1	982.560795	981.553519	1.2572	0.0012353	0.74554	0.00073254	2.0028	0.0019678	982.5616457646846	33.552	0.19293	33.552	33.48	33.673	0	183	88	1.510409	0.051435947	1.510409	306.73923	0	10.445801						320	9	3	NaN	NaN	NaN	0.032417	1	7946	7946		55.947	19.361	1	58139			30090	3252	17347	17829	23989	23989					0.062004300797070755
VYGTAFLVL	9	Unmodified	_VYGTAFLVL_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.5607953861	1	982.560795	981.553519	0.95789	0.00094119	0.14241	0.00013993	1.1003	0.0010811	982.5619216125865	33.551	0.19304	33.549	33.476	33.67	-0.0018463	180	79	1.5121819	0.046102762	1.5106624	307.09927	0	9.362732						328	9	3	NaN	NaN	NaN	0.062836	1	7772	7772		41.46	9.899	1	53751			30091	3252	17347	17829	23990	23990					0.062004300797070755
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5713600723998	1	1060.57136	1059.56408	1.2829	0.0013606	-2.6641	-0.0028255	-1.3813	-0.0014649	1060.5686212846908	35.482	0.19299	35.482	35.434	35.627	0	96	103	1.5617468	0.060135126	1.5617468	316.8416	0	12.200012						444	9	3	NaN	NaN	NaN	0.014943	1	11076	11076		78.398	16.421	1	53333			30092	2393	17348	17830	23991	23991					0.03668412734123194
VYGTIFLTF	9	Unmodified	_VYGTIFLTF_					0	0	0		nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF	nc|ENSG00000124067|Q9UP95-4|SLC12A4	nc|ENSG00000124067|Q9UP95-4|SLC12A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5713600723998	1	1060.57136	1059.56408	0.89232	0.00094637	-2.731	-0.0028964	-1.8387	-0.0019501	1060.568153052568	35.48	0.26537	35.481	35.433	35.698	0.00052643	96	115	1.5617468	0.06720984	1.5602274	316.8416	0	13.635284						369	12	2	NaN	NaN	NaN	0.002833	1	10839	10839		108.51	43.96	1	54744			30093	2393	17348	17830	23992	23992					0.03668412734123194
VYGTLSDLL	9	Unmodified	_VYGTLSDLL_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9;ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000521458.5_1_8:25298091-25315747:-|nuORF	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5298891882002	1	980.529889	979.522613	1.4677	0.0014391	1.4744	0.0014457	2.942	0.0028848	980.5300884305184	30.51	0.19303	30.505	30.432	30.625	-0.0057545	213	103	1.4926696	0.060333133	1.4911501	303.14536	0	12.253021						454	9	4	NaN	NaN	NaN	0.030391	1	7706	7706		58.599	19.681	1	74502			30094	1490	17349	17831	23993	23993					0.03203231974816845
VYHCWHYFELL	11	Unmodified	_VYHCWHYFELL_					0	0	0		ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3528223708	2	755.352822	1508.69109	1.9071	0.0014405	4.4973	0.003397	6.4044	0.0048375	755.8612804387147	25.371	0.072393	25.371	25.346	25.419	0	1011	34	1.0137935	0.020087719	1.0137935	409.76947	0	8.119354						46	4	2	NaN	NaN	NaN	0.73455	1	20612	20612		5.1889	0.45981	1	4494.4			30095	1252	17350	17832	23994	23994					-0.042906093831788894
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.80074862305	2	555.800749	1109.58694	1.5386	0.00085515	-2.1045	-0.0011697	-0.56591	-0.00031453	555.8000631178862	17.261	0.1198	17.261	17.237	17.357	0	1209	49	0.892844	0.02942884	0.892844	362.05994	0	11.933777						146	6	3	NaN	NaN	NaN	0.029744	1	13269	13269		59.445	40.327	1	17131			30096	1180	17351	17833	23995	23995					0.03653431851603273
VYHHWTRS	8	Unmodified	_VYHHWTRS_					0	0	0			REV__ENSG00000168916|ENST00000513986|ZNF608	REV__ENSG00000168916|ENST00000513986|ZNF608	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2674073322	2	543.267407	1084.52026	0.79858	0.00043384	-2.4381	-0.0013245	-1.6395	-0.00089069	543.7671842435016	34.999	0.096485	34.999	34.975	35.072	0	1248	52	0.8689189	0.031306982	0.8689189	352.4579	0	12.699005						174	5	4	NaN	NaN	NaN	0.76633	1	12159	12159		13.737	3.1321	1	14184	+		30097	10528	17352	17834	23996	23996					-0.01861758919631029
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.34987736385	2	566.349877	1130.6852	2.1001	0.0011894	-0.8696	-0.0004925	1.2305	0.0006969	566.3489040942118	26.408	0.048256	26.408	26.36	26.408	0	1179	46	0.9112251	0.027558208	0.9112251	369.42908	0	11.172668						75	3	2	NaN	NaN	NaN	0.030696	1	14118	14118		58.599	34.037	1	16867			30098	755	17353	17835	23997	23997					0.1250866016746386
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.34987736385	2	566.349877	1130.6852	2.0161	0.0011418	0.7687	0.00043535	2.7848	0.0015772	566.3503531540592	26.432	0.12066	26.432	26.432	26.553	0	1170	49	0.91673553	0.029387534	0.91673553	371.66315	0	11.914307						108	6	2	NaN	NaN	NaN	0.030696	1	14119	14119		58.599	34.037	1	15796			30099	755	17353	17835	23998	23998					0.1250866016746386
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.90234373143335	3	377.902344	1130.6852	1.6162	0.00061076	-3.472	-0.0013121	-1.8558	-0.00070131	377.9003257452391	27.928	0.048246	27.919	27.895	27.943	-0.009552	1398	28	0.77658504	0.016666055	0.7750656	472.2599	0	10.13501						41	3	2	NaN	NaN	NaN	0.14787	1	13660	13660		28.896	21.213	1	4755.1			30100	755	17353	17835	23999	23999					0.1250866016746386
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.90234373143335	3	377.902344	1130.6852	2.2474	0.00084931	-2.5221	-0.0009531	-0.27465	-0.00010379	377.9010736777491	28.001	0.048285	27.992	27.968	28.016	-0.0089798	1398	25	0.77658504	0.014815092	0.7750656	472.2599	0	9.009399						30	3	2	NaN	NaN	NaN	0.40649	1	13661	13661		13.463	5.2182	1	2380.1			30101	755	17353	17835	24000	24000					0.1250866016746386
VYHSYDLPWF	10	Unmodified	_VYHSYDLPWF_					0	0	0		ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;ENSG00000163624|ENST00000295887|CDS1	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.81131330935	2	663.811313	1325.60807	1.759	0.0011676	-2.2677	-0.0015053	-0.50878	-0.00033774	663.8103538323087	29.763	0.24131	29.763	29.715	29.956	0	1125	79	0.9442611	0.04766208	0.9442611	382.1437	0	19.28888						378	11	4	NaN	NaN	NaN	0.051632	1	19181	19181		52.624	39.161	1	48802			30102	1311	17354	17836	24001	24001					-0.04170602839531057
VYHSYDLPWF	10	Unmodified	_VYHSYDLPWF_					0	0	0		ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;ENSG00000163624|ENST00000295887|CDS1	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	ENST00000467923.5_1_20:5107766-5163790:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	663.81131330935	2	663.811313	1325.60807	1.5694	0.0010418	-3.266	-0.002168	-1.6965	-0.0011262	663.8097256982606	29.786	0.24129	29.779	29.707	29.948	-0.0070648	1119	67	0.9479278	0.040320754	0.94640833	383.62762	0	16.317871						405	11	4	NaN	NaN	NaN	0.67523	1	18325	18325		9.746	2.8828	1	51864			30103	1311	17354	17836	24002	24002					-0.04170602839531057
VYICTPNNI	9	Unmodified	_VYICTPNNI_					0	0	0		ENST00000374994.8_2_9:101915367-101915715:+|nuORF	ENST00000374994.8_2_9:101915367-101915715:+|nuORF	ENST00000374994.8_2_9:101915367-101915715:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.76023486655	2	518.760235	1035.50592	1.1605	0.00060204	-5.0743	-0.0026323	-3.9138	-0.0020303	518.7571982957071	35.699	0.072395	35.699	35.675	35.747	0	1281	52	0.84864825	0.031347692	0.84864825	344.43988	0	12.723053						95	4	2	NaN	NaN	NaN	0.53317	1	10007	10007		8.2448	0.70444	1	7732.5			30104	6692	17355	17837	24003	24003					-0.010415921827870989
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.8852413017667	3	364.885241	1091.63389	2.1026	0.00076722	-1.3476	-0.00049173	0.75501	0.00027549	364.88443831763396	17.813	0.14386	17.813	17.789	17.933	0	1461	55	0.7376554	0.03341353	0.7376554	448.77875	0	20.328278						180	7	3	NaN	NaN	NaN	0.097143	1	12480	12480		26.96	6.4469	1	51940			30105	1910	17356	17838	24004	24004					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.8242237193501	2	546.824224	1091.63389	1.9548	0.0010689	-0.8462	-0.00046272	1.1086	0.0006062	546.8236508583212	17.813	0.14386	17.813	17.789	17.933	0	1176	73	0.9130621	0.044105053	0.9130621	370.3333	0	17.888794						231	7	4	NaN	NaN	NaN	0.012495	1	12481	12481		85.344	29.397	1	67707			30106	1910	17356	17838	24005	24005					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.8852413017667	3	364.885241	1091.63389	2.1773	0.00079447	-1.8188	-0.00066365	0.35854	0.00013083	364.88450850376853	17.906	0.11996	17.892	17.844	17.964	-0.013786	1461	46	0.7376554	0.027837038	0.73613596	448.77875	0	16.935669						202	6	4	NaN	NaN	NaN	0.041983	1	12165	12165		44.633	9.1105	1	52663			30107	1910	17356	17838	24006	24006					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.8242237193501	2	546.824224	1091.63389	2	0.0010937	-1.6065	-0.00087849	0.3935	0.00021517	546.8228294865116	17.906	0.11996	17.892	17.844	17.964	-0.013786	1176	88	0.9130621	0.05331379	0.91154265	370.33334	0	21.62381						301	6	4	NaN	NaN	NaN	0.012018	1	12166	12166		86.792	39.752	1	79739			30108	1910	17356	17838	24007	24007					0.09174291402769086
VYIDQTMVL	9	Unmodified	_VYIDQTMVL_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.5598091081001	1	1081.55981	1080.55253	1.3317	0.0014403	-2.9355	-0.0031749	-1.6038	-0.0017346	1081.5555493210857	28.677	0.096514	28.677	28.629	28.725	0	63	133	1.5811787	0.077797174	1.5811787	320.70377	0	15.779297						297	5	3	NaN	NaN	NaN	0.026295	1	12011	12011		63.958	13.997	1	25436			30109	1966	17357	17839	24008	24008					0.015478476485213832
VYIDQTMVL	9	Unmodified						0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1081.55981	1080.55253	1.4286	0.0015451	-2.6003	-0.0028124	-1.1717	-0.0012673	1081.5551994659818	28.652	0.072397	28.644	28.644	28.716	-0.0083485	60	130	1.582944	0.07602501	1.5814246	321.06183		15.419861	-0.016612	0.00018976	0.00012298	NaN	63.958	206	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19706			30110	1966	17357	17839							0.015478476485213832
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(84)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.5547237302	1	1097.55472	1096.54745	2.0675	0.0022692	-0.60628	-0.00066542	1.4612	0.0016038	1097.5547685023032	25.298	0.048246	25.298	25.274	25.322	0	66	46	1.579413	0.026486635	1.579413	320.2867	0	5.3711853						74	3	3	NaN	NaN	NaN	0.012861	1	12694	12694		84.233	44.774	1	5689			30111	1966	17357	17840	24009	24009		220			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(45)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.2810000984001	2	549.281	1096.54745	1.7938	0.00098532	-0.97282	-0.00053435	0.82102	0.00045097	549.2806980245916	25.443	0.096519	25.431	25.382	25.479	-0.012011	1251	64	0.8670771	0.038664997	0.8655577	351.6624	0	15.681427						116	5	2	NaN	NaN	NaN	0.055351	1	12362	12362		44.638	18.524	1	25033			30112	1966	17357	17840	24010	24010		220			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)						0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.281	1096.54745	1.6537	0.00090834	-1.0315	-0.00056659	0.62217	0.00034175	549.2806155627446	25.419	0.096544	25.419	25.371	25.467	0	1251	52	0.8670771	0.031306982	0.8670771	351.6624		12.697235	-0.0059078	-2.6064E-05	0.00075972	NaN	44.638	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23699			30113	1966	17357	17840				220			0.003035437858898149
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.22062397190007	3	374.220624	1119.64004	2.5694	0.00096152	-1.1981	-0.00044834	1.3713	0.00051318	374.2202090953056	17.909	0.2878	17.909	17.861	18.149	0	1485	100	0.72280174	0.06130135	0.72280174	439.6051	0	37.283264						745	13	5	NaN	NaN	NaN	0.030696	1	13675	13675		44.633	25.297	1	677530			30114	4077	17358	17841	24011	24011					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8272977245501	2	560.827298	1119.64004	2.5715	0.0014422	-0.4841	-0.0002715	2.0874	0.0011707	560.8271664257202	17.909	0.26383	17.909	17.861	18.125	0	1167	100	0.91857195	0.060628116	0.91857195	372.4519	0	24.582794						527	12	5	NaN	NaN	NaN	0.017791	1	13676	13676		74.794	35.335	1	444100			30115	4077	17358	17841	24012	24012					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.22062397190007	3	374.220624	1119.64004	2.8368	0.0010616	-1.4092	-0.00052735	1.4276	0.00053423	374.22005198127044	18.002	0.38386	17.988	17.916	18.3	-0.013786	1485	94	0.72280174	0.057579875	0.7212823	439.6051	0	35.019867						901	17	5	NaN	NaN	NaN	0.041983	1	13273	13273		38.269	16.419	1	745640			30116	4077	17358	17841	24013	24013					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-3|LMNA	nc|ENSG00000160789|P02545-3|LMNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8272977245501	2	560.827298	1119.64004	2.5564	0.0014337	-0.64475	-0.00036159	1.9117	0.0010721	560.8269844013934	18.002	0.35992	17.988	17.94	18.3	-0.013786	1167	82	0.91857195	0.04959947	0.9170525	372.4519	0	20.111023						624	16	5	NaN	NaN	NaN	0.011167	1	13274	13274		89.374	50.456	1	511350			30117	4077	17358	17841	24014	24014					0.08500809634278994
VYIELFDQI	9	Unmodified	_VYIELFDQI_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;ENSG00000107566|ENST00000421367|ERLIN1	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3027897855001	2	570.30279	1138.59103	0.91403	0.00052127	-0.54338	-0.00030989	0.37064	0.00021138	570.3020648398655	33.697	0.16892	33.697	33.673	33.842	0	1200	40	0.89836043	0.02390188	0.89836043	364.183	0	9.689484						107	8	2	NaN	NaN	NaN	0.33629	1	14406	14406		16.584	5.0357	1	12933			30118	3599	17359	17842	24015	24015					0.02727476554673558
VYIELFDQI	9	Unmodified	_VYIELFDQI_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;ENSG00000107566|ENST00000421367|ERLIN1	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3027897855001	2	570.30279	1138.59103	0.50368	0.00028725	0.20638	0.0001177	0.71006	0.00040495	570.3024194083758	33.72	0.096558	33.718	33.694	33.79	-0.0018463	1197	40	0.9001988	0.02390188	0.8986794	364.92828	0	9.689484						85	5	2	NaN	NaN	NaN	0.16171	1	13936	13936		27.789	14.786	1	12731			30119	3599	17359	17842	24016	24016					0.02727476554673558
VYIGGKTC	8	Unmodified	_VYIGGKTC_					0	0	0		PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	840.4284010045999	1	840.428401	839.421125	1.417	0.0011909	1.3659	0.001148	2.7829	0.0023389	840.4300191861928	32.635	0.19306	32.635	32.611	32.804	0	417	121	1.3715409	0.071533084	1.3715409	279.18954	0	14.561218						307	9	2	NaN	NaN	NaN	0.79379	1	5264	5264		10.052	0.92837	1	31163			30120	8095	17360	17843	24017	24017					-0.005009179287640109
VYIGGKTC	8	Unmodified	_VYIGGKTC_					0	0	0		PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4284010045999	1	840.428401	839.421125	0.73871	0.00062084	0.43732	0.00036754	1.176	0.00098837	840.4287029202006	32.369	0.096519	32.365	32.316	32.413	-0.0037613	459	49	1.3464937	0.028643727	1.3449743	274.09094	0	5.8306885						93	5	2	NaN	NaN	NaN	0.72043	1	5131	5131		17.78	2.7674	1	8918.8			30121	8095	17360	17843	24018	24018					-0.005009179287640109
VYIGGKTC	8	Unmodified	_VYIGGKTC_					0	0	0		PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	PKHD1L1|p.V1277I|1|0.26|ENSG00000205038|chr8:109438965-109438965|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	840.4284010045999	1	840.428401	839.421125	0.75954	0.00063834	1.1112	0.00093389	1.8707	0.0015722	840.4293295643562	32.634	0.2172	32.631	32.583	32.8	-0.0031052	420	115	1.3697531	0.06794202	1.3682337	278.82562	0	13.8302						472	10	2	NaN	NaN	NaN	0.62311	1	5132	5132		23.85	4.5657	1	50109			30122	8095	17360	17843	24019	24019					-0.005009179287640109
VYIGVHVPF	9	Unmodified	_VYIGVHVPF_					0	0	0		ENST00000428005.1_1_3:27465485-27525617:-|nuORF;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENST00000428005.1_1_3:27465485-27525617:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7896526205001	2	515.789653	1029.56475	1.181	0.00060914	-1.7553	-0.00090534	-0.57426	-0.0002962	516.2896075904775	26.939	0.09655	26.928	26.904	27.001	-0.010645	1269	37	0.8560222	0.022114575	0.85450274	347.459	0	8.976288						66	5	2	NaN	NaN	NaN	0.16059	1	9571	9571		27.861	12.398	1	7612.2			30123	502	17361	17844	24020	24020					0.051152521738458745
VYIHHFDRI	9	Unmodified	_VYIHHFDRI_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5488520675	3	400.548852	1198.62473	1.4686	0.00058823	-1.6733	-0.00067025	-0.20476	-8.2018E-05	400.5482408950924	16.422	0.23976	16.422	16.35	16.59	0	1434	49	0.75435036	0.029668689	0.75435036	458.42563	0	18.029938						278	11	3	NaN	NaN	NaN	0.32672	1	16425	16425		17.198	3.2497	1	53968			30124	4825	17362	17845	24021	24021					0.033359428370886235
VYIHHFDRI	9	Unmodified	_VYIHHFDRI_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.3196398679501	2	600.31964	1198.62473	1.4679	0.0008812	-0.51407	-0.0003086	0.95381	0.00057259	600.3190303535093	16.422	0.11988	16.422	16.374	16.494	0	1128	34	0.9424274	0.020172358	0.9424274	381.81815	0	8.172668						106	6	3	NaN	NaN	NaN	0.08308	1	16426	16426		42.995	19.66	1	7274.5			30125	4825	17362	17845	24022	24022					0.033359428370886235
VYIHLYKHYHS	11	Unmodified	_VYIHLYKHYHS_					0	0	0		L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|48|2|anti-sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|48|2|anti-sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|48|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	730.3776860631001	2	730.377686	1458.74082	1.2185	0.00088999	-4.3561	-0.0031816	-3.1375	-0.0022916	730.374182799459	22.259	0.12049	22.246	22.222	22.342	-0.013731	1005	61	1.0174452	0.036521196	1.0159258	411.3735	0	14.766235						260	6	5	NaN	NaN	NaN	0.25335	1	19440	19440		27.296	5.5252	1	46409			30126	7844	17363	17846	24023	24023					0.029798416171388453
VYIIGSSGF	9	Unmodified	_VYIIGSSGF_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	942.4931097514002	1	942.49311	941.485833	1.3824	0.0013029	0.28839	0.0002718	1.6708	0.0015747	942.493822932907	27.495	0.14481	27.495	27.471	27.615	0	255	73	1.4678029	0.042674065	1.4678029	298.2622	0	8.671509						212	7	3	NaN	NaN	NaN	0.0088919	1	6846	6846		94.648	50.401	1	26316			30127	3445	17364	17847	24024	24024					0.012749801489121637
VYIIGSSGF	9	Unmodified	_VYIIGSSGF_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	942.4931097514002	1	942.49311	941.485833	1.3563	0.0012783	0.027903	2.6298E-05	1.3842	0.0013046	942.4933461306637	27.518	0.1448	27.508	27.46	27.605	-0.009552	252	76	1.4695803	0.044449806	1.4680609	298.6234	0	9.032349						199	7	3	NaN	NaN	NaN	0.00011853	1	6709	6709		121.78	74.647	1	24122			30128	3445	17364	17847	24025	24025					0.012749801489121637
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	352.54644851986666	3	352.546449	1054.61752	2.233	0.00078723	-2.8385	-0.0010007	-0.60548	-0.00021346	352.54532116164813	17.093	0.288	17.093	17.021	17.309	0	1515	85	0.7042165	0.052050054	0.7042165	428.62204	0	31.680298						539	13	4	NaN	NaN	NaN	0.03618	1	10858	10858		40.006	22.807	1	238200			30129	1155	17365	17848	24026	24026					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.3160345465001	2	528.316035	1054.61752	2.3351	0.0012337	-0.90638	-0.00047886	1.4287	0.00075482	528.3158878570887	17.093	0.31194	17.093	17.021	17.333	0	1221	79	0.885486	0.047842503	0.885486	359.3057	0	19.413147						701	14	4	NaN	NaN	NaN	0.00065562	1	10859	10859		115.07	62.446	1	591930			30130	1155	17365	17848	24027	24027					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.54644851986666	3	352.546449	1054.61752	2.4018	0.00084673	-1.7266	-0.0006087	0.67517	0.00023803	352.5459041415229	17.21	0.31184	17.196	17.1	17.412	-0.013567	1515	73	0.7042165	0.04462886	0.70269704	428.62204	0	27.163391						618	14	4	NaN	NaN	NaN	0.13602	1	10626	10626		27.046	14.477	1	245400			30131	1155	17365	17848	24028	24028					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.3160345465001	2	528.316035	1054.61752	2.0964	0.0011076	-1.142	-0.00060335	0.95439	0.00050422	528.3154136803145	17.234	0.33585	17.22	17.1	17.436	-0.013569	1221	85	0.885486	0.05153382	0.88396657	359.3057	0	20.91101						870	15	5	NaN	NaN	NaN	0.015029	1	10627	10627		78.289	28.328	1	663710			30132	1155	17365	17848	24029	24029					0.09239210236660256
VYIKYGEK	8	Unmodified	_VYIKYGEK_					0	0	0		tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.27911772395	2	500.279118	998.543683	0.82254	0.0004115	-5.6299	-0.0028165	-4.8073	-0.002405	500.27587181453305	30.462	0.072393	30.456	30.432	30.505	-0.0057545	1287	52	0.8449601	0.031354427	0.84344065	343.10947	0	12.731934						108	4	3	NaN	NaN	NaN	0.75561	1	8348	8348		15.175	1.1338	1	14561			30133	13812	17366	17849	24030	24030					0.04435242074328016
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3034209497	2	601.303421	1200.59229	0.80487	0.00048397	-0.43695	-0.00026274	0.36792	0.00022123	601.3034968636006	33.166	0.19306	33.166	33.142	33.335	0	1167	73	0.91857195	0.044076502	0.91857195	372.14633	0	17.856964						386	9	3	NaN	NaN	NaN	0.59589	1	16497	16497		15.175	2.5875	1	76579	+		30134	10581	17367	17850	24031	24031					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3034209497	2	601.303421	1200.59229	1.668	0.001003	-1.2384	-0.00074463	0.42961	0.00025832	601.3030370103852	32.539	0.28955	32.539	32.442	32.732	0	1161	94	0.9222442	0.056916833	0.9222442	373.6341	0	23.059052						945	13	6	NaN	NaN	NaN	0.13037	1	16498	16498		41.785	15.67	1	810470	+		30135	10581	17367	17850	24032	24032					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3034209497	2	601.303421	1200.59229	1.3349	0.00080267	-2.162	-0.0013	-0.82714	-0.00049736	601.3024705011892	32.537	0.28958	32.534	32.438	32.727	-0.0031052	1158	103	0.92408	0.06240809	0.9225606	374.37787	0	25.283752						880	13	5	NaN	NaN	NaN	0.26902	1	15849	15849		29.598	3.4834	1	852890	+		30136	10581	17367	17850	24033	24033					1.651327556828619E-05
VYILAMVFDM	10	Unmodified						0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.303421	1200.59229	1.668	0.001003	-1.2384	-0.00074463	0.42961	0.00025832	601.3030370103852	32.539	0.28955	32.539	32.442	32.732	0	1161	94	0.9222442	0.056916833	0.9222442	373.6341		23.059052	0.0020672	0.0007135	-0.00015819	NaN	41.785	945	13	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810470	+		30137	10581	17367	17850							1.651327556828619E-05
VYILAMVFDM	10	Unmodified						0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	601.303421	1200.59229	1.3349	0.00080267	-2.162	-0.0013	-0.82714	-0.00049736	601.3024705011892	32.537	0.28958	32.534	32.438	32.727	-0.0031052	1158	103	0.92408	0.06240809	0.9225606	374.37787		25.283752	-0.0020672	-0.00039729	0.00015819	NaN	41.785	880	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852890	+		30138	10581	17367	17850							1.651327556828619E-05
VYILDAMSL	9	Oxidation (M)	_VYILDAM(Oxidation (M))SL_		VYILDAM(1)SL		VYILDAM(81)SL	0	0	1		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5332600066	1	1040.53326	1039.52598	1.7112	0.0017805	0.22618	0.00023535	1.9373	0.0020159	1040.5334700800126	28.339	0.12062	28.339	28.291	28.412	0	120	82	1.5476005	0.04777205	1.5476005	314.0494	0	9.694214						208	6	4	NaN	NaN	NaN	0.014046	1	10194	10194		80.639	30.806	1	23236			30139	3977	17368	17851	24034	24034		430			0.00780158757152094
VYILDAMSL	9	Oxidation (M)	_VYILDAM(Oxidation (M))SL_		VYILDAM(1)SL		VYILDAM(81)SL	0	0	1		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5332600066	1	1040.53326	1039.52598	1.0814	0.0011253	-0.30222	-0.00031447	0.77922	0.0008108	1040.5334401547402	28.339	0.14479	28.33	28.305	28.45	-0.0089779	120	64	1.5476005	0.037152052	1.5460811	314.0494	0	7.539154						208	7	4	NaN	NaN	NaN	0.014046	1	9981	9981		80.639	47.769	1	23896			30140	3977	17368	17851	24035	24035		430			0.00780158757152094
VYILDAMSL	9	Unmodified	_VYILDAMSL_					0	0	0		ENST00000535257.1_1_12:122391860-122397069:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	ENST00000535257.1_1_12:122391860-122397069:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5383453845	1	1024.53835	1023.53107	1.1712	0.0011999	1.1737	0.0012025	2.3449	0.0024024	1024.5388989897322	33.068	0.12057	33.066	33.042	33.162	-0.0024796	114	94	1.5511382	0.05486679	1.5496187	314.83173	0	11.1362						142	6	2	NaN	NaN	NaN	0.014046	1	9326	9326		80.639	27.88	1	13452			30141	3977	17368	17852	24036	24036					0.020244626197836624
VYILDPWFA	9	Unmodified	_VYILDPWFA_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;ENSG00000121671|ENST00000616080|CRY2;ENST00000550633.1_1_12:107466804-107486739:-|nuORF	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.29476778815	2	562.294768	1122.57498	1.535	0.00086312	-7.6647	-0.0043098	-6.1297	-0.0034467	562.2920851517686	22.91	0.19289	22.896	22.848	23.041	-0.01354	1206	100	0.894683	0.06073302	0.89316356	362.75418	0	24.624542						360	9	3	NaN	NaN	NaN	0.14945	1	13378	13378		28.667	0.8777	1	57025			30142	375	17369	17853	24037	24037					0.018598151084233905
VYILKGGYERF	11	Unmodified	_VYILKGGYERF_					0	0	0		nc|ENSG00000127952|Q9Y6J8-2|STYXL1;ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	nc|ENSG00000127952|Q9Y6J8-2|STYXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	448.91520051503335	3	448.915201	1343.72377	0.89568	0.00040209	-0.072861	-3.2708E-05	0.82282	0.00036938	448.91527072113763	20.598	0.16875	20.584	20.535	20.704	-0.014088	1362	52	0.79879075	0.03144282	0.7972713	484.83633	0	19.084625						154	8	3	NaN	NaN	NaN	0.12632	1	18604	18604		37.181	19.212	1	17107			30143	2550	17370	17854	24038	24038					0.06565921011315368
VYILQPEVI	9	Unmodified	_VYILQPEVI_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.6241239244	1	1073.62412	1072.61685	1.7955	0.0019277	0.44609	0.00047893	2.2416	0.0024067	1073.623839563908	30.27	0.12066	30.27	30.246	30.366	0	66	94	1.579413	0.054773927	1.579413	320.37552	0	11.110596						268	6	4	NaN	NaN	NaN	2.9468E-07	1	11682	11682		130.62	47.659	1	42459			30144	5717	17371	17855	24039	24039					0.08344370796953626
VYILQPEVI	9	Unmodified	_VYILQPEVI_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.6241239244	1	1073.62412	1072.61685	1.1136	0.0011956	0.083597	8.9752E-05	1.1972	0.0012853	1073.6239995570627	30.269	0.09651	30.263	30.238	30.335	-0.0064106	66	106	1.579413	0.061848044	1.5778936	320.37552	0	12.545563						257	5	3	NaN	NaN	NaN	0.0052656	1	11381	11381		102.05	25.307	1	39773			30145	5717	17371	17855	24040	24040					0.08344370796953626
VYILWSKW	8	Unmodified	_VYILWSKW_					0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.8053026847	2	547.805303	1093.59605	1.1338	0.00062109	-6.0024	-0.0032882	-4.8686	-0.0026671	547.8036193508328	20.911	0.072218	20.911	20.887	20.959	0	1242	37	0.87260187	0.022095501	0.87260187	353.91498	0	8.961609						60	4	2	NaN	NaN	NaN	0.75561	1	12569	12569		15.175	1.4383	1	9802.8	+		30146	11167	17372	17856	24041	24041					0.05299825207930553
VYILWSKW	8	Unmodified						0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	547.805303	1093.59605	1.1338	0.00062109	-6.0024	-0.0032882	-4.8686	-0.0026671	547.8036193508328	20.911	0.072218	20.911	20.887	20.959	0	1242	37	0.87260187	0.022095501	0.87260187	353.91498		8.961609	0	0	0	NaN	15.175	60	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9802.8	+		30147	11167	17372	17856							0.05299825207930553
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.82422371935	2	552.824224	1103.63389	1.5999	0.00088444	-2.2094	-0.0012214	-0.60959	-0.00033699	552.8226204625487	23.32	0.12058	23.32	23.272	23.393	0	1191	43	0.90387505	0.02573073	0.90387505	366.5574	0	10.434845						117	6	3	NaN	NaN	NaN	0.2961	1	13007	13007		19.164	6.1607	1	18133			30148	4358	17373	17857	24042	24042					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.82422371935	2	552.824224	1103.63389	1.74	0.0009619	-1.8406	-0.0010175	-0.10061	-5.5622E-05	552.8234032213825	23.344	0.096512	23.331	23.307	23.403	-0.013294	1191	46	0.90387505	0.027567148	0.9023556	366.5574	0	11.179596						122	5	3	NaN	NaN	NaN	0.56377	1	12657	12657		6.9844	0.73415	1	17389			30149	4358	17373	17857	24043	24043					0.08622291402753035
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.8080423389	2	516.808042	1031.60153	1.2989	0.00067131	-2.1336	-0.0011027	-0.83465	-0.00043135	516.8071815661702	34.999	0.19294	34.999	34.951	35.144	0	1251	49	0.8670771	0.029470205	0.8670771	351.937	0	11.961639						204	9	3	NaN	NaN	NaN	0.024986	1	9865	9865		65.672	15.639	1	79101			30150	3214	17374	17858	24044	24044					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.6088082111999	1	1032.60881	1031.60153	1.2527	0.0012936	-0.012947	-1.3369E-05	1.2398	0.0012802	1032.6086763495196	34.999	0.19294	34.999	34.951	35.144	0	78	130	1.5723488	0.07601702	1.5723488	319.1036	0	15.427429						589	9	4	NaN	NaN	NaN	0.0081087	1	9866	9866		96.245	34.269	1	140420			30151	3214	17374	17858	24045	24045					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.8080423389	2	516.808042	1031.60153	1.1301	0.00058406	-1.6701	-0.00086312	-0.53996	-0.00027905	516.8072160514624	34.998	0.19302	34.998	34.95	35.143	-4.5776E-05	1248	58	0.8689189	0.03499776	0.86739945	352.68457	0	14.2052						236	9	4	NaN	NaN	NaN	0.024986	1	9657	9657		65.672	12.914	1	71015			30152	3214	17374	17858	24046	24046					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.6088082111999	1	1032.60881	1031.60153	1.346	0.0013899	-0.62114	-0.00064139	0.72482	0.00074846	1032.6077947020558	34.998	0.21716	34.998	34.95	35.167	-4.5776E-05	75	115	1.5741152	0.06716001	1.5725957	319.4621	0	13.629944						554	10	4	NaN	NaN	NaN	0.020004	1	9658	9658		71.993	19.235	1	136380			30153	3214	17374	17858	24047	24047					0.08699503999741864
VYINNKAKI	9	Unmodified	_VYINNKAKI_					0	0	0		ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.8189413762001	2	531.818941	1061.62333	1.2466	0.00066297	-0.40264	-0.00021413	0.84397	0.00044884	531.8188852504761	23.031	0.096354	23.017	22.969	23.065	-0.013294	1227	64	0.88180584	0.03863156	0.8802864	357.78192	0	15.674286						102	5	2	NaN	NaN	NaN	0.56671	1	10947	10947		6.8632	1.3974	1	7987.4			30154	2985	17375	17859	24048	24048					0.09498308748334239
VYINNKAKI	9	Unmodified						0	0	0		ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	531.818941	1061.62333	2.1194	0.0011271	0.7882	0.00041918	2.9076	0.0015463	531.8189726461732	22.983	0.072256	22.983	22.935	23.007	0	1224	64	0.883646	0.038623214	0.883646	358.52856		15.670898	-0.017088	0.00062424	0.0016798	NaN	6.8632	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6602.2			30155	2985	17375	17859							0.09498308748334239
VYINQVEL	8	Unmodified	_VYINQVEL_					0	0	0			REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	489.26875000289994	2	489.26875	976.522947	1.519	0.00074321	-4.9587	-0.0024261	-3.4397	-0.0016829	489.2663813659272	16.994	0.16787	16.981	16.885	17.053	-0.013294	1323	124	0.8228144	0.07566863	0.82129496	334.21924	0	30.7359						140	8	2	NaN	NaN	NaN	0.6053	1	7638	7638		24.961	0.39899	1	12746	+		30156	8310	17376	17860	24049	24049					0.033746516946507654
VYINQVEL	8	Unmodified						0	0	0			REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	489.26875	976.522947	1.8878	0.00092364	-7.6787	-0.003757	-5.7909	-0.0028333	489.2649963992467	16.997	0.11999	16.997	16.949	17.069	0	1326	139	0.8209676	0.08487362	0.8209676	333.4691		34.474823	0.0083242	-0.0014537	-0.00016367	NaN	24.961	151	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12793	+		30157	8310	17376	17860							0.033746516946507654
VYINQVEL	8	Unmodified						0	0	0			REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	REV__DHX34|p.M1010I|1|0.19|ENSG00000134815|chr19:47380863-47380863|G/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	489.26875	976.522947	1.519	0.00074321	-4.9587	-0.0024261	-3.4397	-0.0016829	489.2663813659272	16.994	0.16787	16.981	16.885	17.053	-0.013294	1323	124	0.8228144	0.07566863	0.82129496	334.21924		30.7359	-0.0083242	0.001208	0.00016367	NaN	24.961	140	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12746	+		30158	8310	17376	17860							0.033746516946507654
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5309518206998	1	1084.53095	1083.52368	1.8653	0.0020229	-0.36856	-0.00039972	1.4967	0.0016232	1084.5308558053546	23.441	0.096527	23.441	23.417	23.513	0	111	58	1.5529068	0.033599496	1.5529068	314.9586	0	6.8146057						162	5	3	NaN	NaN	NaN	0.015029	1	12119	12119		78.289	28.328	1	16527			30159	1117	17377	17861	24050	24050					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.76911414365	2	542.769114	1083.52368	1.8943	0.0010282	1.0775	0.00058482	2.9718	0.001613	542.7683651983156	23.441	0.14472	23.441	23.417	23.562	0	1245	67	0.87076044	0.040525913	0.87076044	353.20895	0	16.43863						219	7	2	NaN	NaN	NaN	0.44082	1	12121	12121		12.049	2.4371	1	52653			30160	1117	17377	17861	24051	24051					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1084.5309518206998	1	1084.53095	1083.52368	1.9477	0.0021123	-2.3571	-0.0025563	-0.40941	-0.00044402	1084.5276518288122	23.465	0.096539	23.451	23.427	23.524	-0.013294	108	58	1.5546752	0.03359604	1.5531558	315.31726	0	6.813904						145	5	3	NaN	NaN	NaN	1.2966E-07	1	11809	11809		136.74	78.339	1	15342			30161	1117	17377	17861	24052	24052					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENST00000600510.1_1_19:12786654-12786995:-|nuORF;nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENST00000600510.1_1_19:12786654-12786995:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.76911414365	2	542.769114	1083.52368	1.9216	0.001043	1.976	0.0010725	3.8976	0.0021155	542.7687998953496	23.465	0.21716	23.451	23.403	23.62	-0.013294	1245	70	0.87076044	0.04237026	0.869241	353.20892	0	17.186768						286	10	3	NaN	NaN	NaN	0.10363	1	11812	11812		35.296	9.4955	1	50527			30162	1117	17377	17861	24053	24053					-0.014745536562941197
VYIPCIYVL	9	Unmodified	_VYIPCIYVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.8013713997501	2	541.801371	1081.58819	1.3855	0.00075066	-1.5978	-0.00086572	-0.21235	-0.00011505	541.800855033372	36.302	0.24109	36.302	36.181	36.422	0	1245	79	0.87076044	0.047852874	0.87076044	353.2169	0	19.411102						310	11	3	NaN	NaN	NaN	0.26823	1	12061	12061		20.952	8.3646	1	29011			30163	5430	17378	17862	24054	24054					0.05065929896159105
VYIPCIYVL	9	Unmodified	_VYIPCIYVL_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.8013713997501	2	541.801371	1081.58819	1.4998	0.0008126	-0.096233	-5.2139E-05	1.4036	0.00076046	541.8016229667468	36.276	0.21683	36.277	36.181	36.397	0.0011024	1245	70	0.87076044	0.042329073	0.869241	353.2169	0	17.17044						279	10	3	NaN	NaN	NaN	0.16059	1	11748	11748		27.861	12.685	1	23462			30164	5430	17378	17862	24055	24055					0.05065929896159105
VYIPGSNATL	10	Unmodified	_VYIPGSNATL_					0	0	0		ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000261934|ENST00000573521|PCDHGA9;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000253910|ENST00000522605|PCDHGB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5516872628	1	1034.55169	1033.54441	1.3007	0.0013457	-0.25131	-0.00026	1.0494	0.0010857	1034.5504382881336	24.429	0.12075	24.417	24.393	24.513	-0.012749	189	73	1.5068626	0.042556405	1.5053432	305.8058	0	8.636505						251	6	3	NaN	NaN	NaN	0.00022865	1	9727	9727		101.27	31.912	1	46761			30165	925;5911;6115;6113;6118	17379	17863	24056	24056					0.028980367233771176
VYIPGSNATL	10	Unmodified						0	0	0		ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000261934|ENST00000573521|PCDHGA9;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000253910|ENST00000522605|PCDHGB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.55169	1033.54441	1.4004	0.0014488	0.084558	8.748E-05	1.4849	0.0015363	1034.5514325698548	24.43	0.24119	24.43	24.381	24.623	0	189	64	1.5068626	0.03724277	1.5068626	305.8058		7.558136	0.0064839	0.00016108	0.00075972	NaN	101.27	273	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50835			30166	925;5911;6115;6113;6118	17379	17863							0.028980367233771176
VYIQEMFRF	9	Oxidation (M)	_VYIQEM(Oxidation (M))FRF_		VYIQEM(1)FRF		VYIQEM(40)FRF	0	0	1		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.8077163754	2	624.807716	1247.60088	1.1147	0.00069645	-0.27884	-0.00017422	0.83583	0.00052223	624.8054389045908	24.984	0.096542	24.972	24.9	24.996	-0.012392	1143	61	0.9332562	0.036694765	0.93173677	377.93353	0	14.860016						214	5	4	NaN	NaN	NaN	0.070055	1	16974	16974		40.154	14.039	1	51724			30167	3166	17380	17864	24057	24057		353			-0.01301658711622622
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.58378520833327	3	413.583785	1237.72953	1.869	0.00077297	-2.1527	-0.00089032	-0.28373	-0.00011735	413.58292431562364	16.758	0.19187	16.758	16.686	16.877	0	1413	43	0.7673241	0.025937617	0.7673241	466.14246	0	15.756836						329	9	5	NaN	NaN	NaN	0.019815	1	17480	17480		46.512	36.309	1	103860			30168	1182	17381	17865	24058	24058					0.12017064313636183
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.5172175880999	3	387.517218	1159.52982	1.9269	0.0007467	-1.7905	-0.00069386	0.13635	5.2837E-05	387.51670874317836	16.47	0.21577	16.47	16.422	16.638	0	1449	64	0.74507743	0.038959205	0.74507743	452.96378	0	23.684937						449	10	4	NaN	NaN	NaN	0.049695	1	15115	15115		40.154	23.495	1	239100			30169	1497	17382	17866	24059	24059					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.77218814885	2	580.772188	1159.52982	2.2965	0.0013337	-1.689	-0.00098094	0.60744	0.00035279	580.7712753506634	16.47	0.26382	16.47	16.446	16.71	0	1155	136	0.92591566	0.08269268	0.92591566	375.27246	0	33.51526						544	12	5	NaN	NaN	NaN	0.012648	1	15116	15116		84.879	58.764	1	209720			30170	1497	17382	17866	24060	24060					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.77218814885	2	580.772188	1159.52982	2.2662	0.0013161	-1.4073	-0.00081734	0.85885	0.00049879	580.7712341429018	16.515	0.23975	16.502	16.454	16.693	-0.012993	1152	97	0.92775106	0.058743358	0.9262317	376.01636	0	23.808594						561	11	4	NaN	NaN	NaN	0.014046	1	14610	14610		80.639	41.18	1	225580			30171	1497	17382	17866	24061	24061					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.5172175880999	3	387.517218	1159.52982	2.1981	0.00085181	-1.2864	-0.00049851	0.91171	0.0003533	387.5167041937262	16.515	0.19176	16.502	16.454	16.645	-0.012993	1449	79	0.74507743	0.04824829	0.743558	452.96378	0	29.332123						524	9	5	NaN	NaN	NaN	0.078597	1	14612	14612		27.296	8.7381	1	242420			30172	1497	17382	17866	24062	24062					-0.043560354247802024
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENSG00000113811|ENST00000495461|SELENOK	ENSG00000113811|ENST00000495461|SELENOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5411225765	1	992.541123	991.533846	2.4762	0.0024578	-0.15921	-0.00015803	2.317	0.0022997	992.5405697217194	23.103	0.09647	23.103	23.079	23.176	0	237	76	1.4784646	0.044412017	1.4784646	300.21	0	9.018097						198	5	3	NaN	NaN	NaN	0.011693	1	8281	8281		87.778	23.228	1	32299			30173	1933	17383	17867	24063	24063					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENSG00000113811|ENST00000495461|SELENOK;ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENSG00000113811|ENST00000495461|SELENOK	ENSG00000113811|ENST00000495461|SELENOK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5411225765	1	992.541123	991.533846	1.8717	0.0018577	-1.2792	-0.0012697	0.59242	0.000588	992.5400905069944	23.127	0.12051	23.114	23.065	23.186	-0.013296	234	73	1.4802408	0.042624116	1.4787214	300.57068	0	8.65506						204	6	3	NaN	NaN	NaN	0.012495	1	8116	8116		85.344	40.706	1	32055			30174	1933	17383	17867	24064	24064					0.037740540689469526
VYISNVAQKMF	11	Unmodified	_VYISNVAQKMF_					0	0	0		tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.89704104453324	3	433.897041	1298.66929	2.2595	0.00098039	-6.5002	-0.0028204	-4.2407	-0.00184	433.89430381169893	18.122	0.071991	18.108	18.084	18.156	-0.013948	1425	37	0.7599118	0.022244275	0.75839233	461.40088	0	13.506195						50	4	2	NaN	NaN	NaN	0.76442	1	17924	17924		1.1368	0.25221	1	3914.1			30175	13911	17384	17868	24065	24065					0.031905858682193866
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	978.5870101366	1	978.58701	977.579734	1.9003	0.0018596	0.61327	0.00060013	2.5136	0.0024598	978.587657645653	32.876	0.24139	32.876	32.828	33.069	0	129	223	1.5422925	0.13124382	1.5422925	313.23187	0	26.654968						1049	11	4	NaN	NaN	NaN	0.013314	1	7831	7831		82.858	0	1	507140			30176	2002	17385	17869	24066	24066					0.09004699251181592
VYISYLDSVHF	11	Unmodified	_VYISYLDSVHF_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.8375280598499	2	671.837528	1341.6605	0.99166	0.00066623	-2.9108	-0.0019556	-1.9192	-0.0012894	671.8359508001732	28.821	0.12068	28.813	28.789	28.909	-0.0083504	1065	67	0.9808926	0.04026431	0.97937316	396.91953	0	16.293						129	6	2	NaN	NaN	NaN	0.48069	1	18567	18567		19.164	12.913	1	13206			30177	1240	17386	17870	24067	24067					0.0033393550338587374
VYISYLDSVHF	11	Unmodified						0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;EP300|p.V1393_I1395dup|1|0.23|ENSG00000100393|chr22:41169505-41169506|-/AGTATACAT|inframe_insertion	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	671.837528	1341.6605	1.3033	0.00087564	-3.1239	-0.0020987	-1.8205	-0.0012231	671.8353468603026	28.822	0.096542	28.822	28.798	28.894	0	1065	64	0.9808926	0.03842783	0.9808926	396.91953		15.549896	0.0045493	-0.00017991	0.00075972	NaN	19.164	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10836			30178	1240	17386	17870							0.0033393550338587374
VYITGKEVFSF	11	Unmodified	_VYITGKEVFSF_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.3424462622501	2	645.342446	1288.67034	2	0.0012907	-3.6553	-0.0023589	-1.6553	-0.0010682	645.340106304651	26.601	0.14483	26.601	26.529	26.674	0	1125	82	0.9442611	0.049503207	0.9442611	382.25668	0	20.039948						299	7	5	NaN	NaN	NaN	0.43114	1	18573	18573		20.936	9.3749	1	45762			30179	5745	17387	17871	24068	24068					0.03755123508813085
VYITGKEVFSF	11	Unmodified	_VYITGKEVFSF_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	645.3424462622501	2	645.342446	1288.67034	1.6037	0.0010349	-4.9512	-0.0031952	-3.3475	-0.0021603	645.3399009577134	26.601	0.19304	26.59	26.566	26.759	-0.010645	1125	82	0.9442611	0.049497902	0.94274163	382.25668	0	20.03778						384	9	4	NaN	NaN	NaN	0.063104	1	17745	17745		46.512	22.112	1	49846			30180	5745	17387	17871	24069	24069					0.03755123508813085
VYITHIDDPW	10	Unmodified	_VYITHIDDPW_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.8087706204	2	629.808771	1257.60299	1.7813	0.0011219	6.0434	0.0038062	7.8247	0.004928	629.8132166520774	30.27	0.14476	30.27	30.198	30.342	0	1128	58	0.9424274	0.034843147	0.9424274	381.61426	0	14.108917						267	7	5	NaN	NaN	NaN	0.59589	1	17947	17947		15.175	0.16249	1	58155			30181	5184	17388	17872	24070	24070					-0.015509067021639567
VYITHIDDPW	10	Unmodified	_VYITHIDDPW_					0	0	0		nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	nc|ENSG00000180113|O60522-2|TDRD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8087706204	2	629.808771	1257.60299	0.94047	0.00059232	6.7732	0.0042658	7.7136	0.0048581	629.8137639866854	30.269	0.14477	30.263	30.166	30.311	-0.0064106	1125	55	0.9442611	0.033003926	0.94274163	382.35675	0	13.364197						273	7	5	NaN	NaN	NaN	0.53991	1	17178	17178		17.799	1.9771	1	53930			30182	5184	17388	17872	24071	24071					-0.015509067021639567
VYITNFHVRM	10	Unmodified	_VYITNFHVRM_					0	0	0		POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;ENSG00000047315|ENST00000314595|POLR2B	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.2253805904666	3	427.225381	1278.65431	1.5297	0.00065353	-0.61614	-0.00026323	0.91357	0.0003903	427.22457657470665	21.705	0.048134	21.705	21.705	21.754	0	1407	31	0.77102906	0.018520832	0.77102906	468.22803	0	11.247284						42	3	2	NaN	NaN	NaN	0.52161	1	18393	18393		18.558	10.281	1	4870.8			30183	8101	17389	17873	24072	24072					0.026131387908890247
VYITNYRLYL	10	Unmodified	_VYITNYRLYL_					0	0	0		ENST00000306167.11_1_X:149761076-149807431:+|nuORF;nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1	ENST00000306167.11_1_X:149761076-149807431:+|nuORF	ENST00000306167.11_1_X:149761076-149807431:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.3637130206001	2	659.363713	1316.71287	1.2964	0.00085478	-2.2935	-0.0015123	-0.99718	-0.0006575	659.3622696088822	26.988	0.16893	26.988	26.964	27.133	0	1050	70	0.9900381	0.042078614	0.9900381	400.69766	0	17.030457						303	8	4	NaN	NaN	NaN	0.069158	1	19068	19068		69.363	37.688	1	74919			30184	4765	17390	17874	24073	24073					0.06718518637057969
VYITNYRLYL	10	Unmodified	_VYITNYRLYL_					0	0	0		ENST00000306167.11_1_X:149761076-149807431:+|nuORF;nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1	ENST00000306167.11_1_X:149761076-149807431:+|nuORF	ENST00000306167.11_1_X:149761076-149807431:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.3637130206001	2	659.363713	1316.71287	1.2507	0.00082467	-1.75	-0.0011539	-0.49931	-0.00032922	659.3624627410048	27.011	0.19309	27.001	26.977	27.17	-0.010126	1050	58	0.9900381	0.034753084	0.9885187	400.69766	0	14.065613						336	9	5	NaN	NaN	NaN	0.0037187	1	18221	18221		106.42	76.389	1	64595			30185	4765	17390	17874	24074	24074					0.06718518637057969
VYIYEELVF	9	Unmodified	_VYIYEELVF_					0	0	0		ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	ENST00000436587.6_1_7:7283538-7283649:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.80516529895	2	587.805165	1173.59578	1.7808	0.0010468	6.6241	0.0038937	8.4049	0.0049404	587.8091859607804	29.039	0.31377	29.039	28.894	29.208	0	1200	76	0.89836043	0.04594034	0.89836043	364.053	0	18.616913						466	14	3	NaN	NaN	NaN	0.070055	1	15604	15604		47.04	11.004	1	125610			30186	6994	17391	17875	24075	24075					0.015923606974183713
VYIYGRHLYF	10	Unmodified	_VYIYGRHLYF_					0	0	0		ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.8507728208501	2	665.850773	1329.68699	2.007	0.0013364	-3.6935	-0.0024593	-1.6865	-0.0011229	666.3497212488487	22.863	0.1206	22.863	22.838	22.959	0	1044	31	0.99369496	0.018282235	0.99369496	402.13693	0	7.39859						65	6	2	NaN	NaN	NaN	0.29898	1	19248	19248		27.789	18.827	1	5129.6			30187	978	17392	17876	24076	24076					0.035336691854354285
VYIYGRHLYF	10	Unmodified	_VYIYGRHLYF_					0	0	0		ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	444.23627403610004	3	444.236274	1329.68699	1.3851	0.0006153	-1.8712	-0.00083124	-0.4861	-0.00021594	444.2352461948555	22.863	0.096508	22.863	22.838	22.935	0	1410	37	0.76917666	0.02222979	0.76917666	466.9118	0	13.49411						117	5	3	NaN	NaN	NaN	0.56921	1	19249	19249		9.5705	2.2811	1	9629.4			30188	978	17392	17876	24077	24077					0.035336691854354285
VYIYGRHLYF	10	Unmodified	_VYIYGRHLYF_					0	0	0		ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	ENSG00000085871|ENST00000265498|MGST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.23627403610004	3	444.236274	1329.68699	1.5587	0.00069245	-0.17102	-7.5971E-05	1.3877	0.00061648	444.57049544195775	23.079	0.096277	23.065	23.017	23.114	-0.013294	1410	31	0.76917666	0.018522859	0.7676573	466.9118	0	11.2438965						62	5	2	NaN	NaN	NaN	0.73444	1	18392	18392		7.1304	5.4498	1	6669.8			30189	978	17392	17876	24078	24078					0.035336691854354285
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(99)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	625.80992471335	2	625.809925	1249.6053	1.9313	0.0012086	-2.6972	-0.0016879	-0.76587	-0.00047929	625.8089658756663	22.573	0.21703	22.573	22.477	22.694	0	1152	82	0.92775106	0.04954064	0.92775106	375.69757	0	20.061737						520	10	5	NaN	NaN	NaN	0.0002722	1	17768	17768		98.792	69.896	1	123960			30190	1559	17393	17877	24079	24079		181			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(49)ETF	0	0	1		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.80992471335	2	625.809925	1249.6053	1.204	0.00075348	-2.0995	-0.0013139	-0.89552	-0.00056042	625.8089118987688	22.597	0.26538	22.583	22.487	22.752	-0.01354	1155	85	0.92591566	0.05137825	0.9243962	374.9543	0	20.805878						540	12	5	NaN	NaN	NaN	0.080496	1	17015	17015		48.65	26.879	1	128830			30191	1559	17393	17877	24080	24080		181			-0.00952194288697683
VYKDLLVLF	9	Unmodified	_VYKDLLVLF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.33389294865	2	555.333893	1108.65323	0.79193	0.00043979	-1.6438	-0.00091288	-0.85191	-0.00047309	555.3329030912931	31.477	0.24139	31.477	31.428	31.67	0	1161	91	0.9222442	0.055101573	0.9222442	373.98596	0	22.344635						477	11	4	NaN	NaN	NaN	0.060816	1	13239	13239		42.318	5.7311	1	135420			30192	515	17394	17878	24081	24081					0.10325247693640449
VYKDLLVLF	9	Unmodified	_VYKDLLVLF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.33389294865	2	555.333893	1108.65323	0.89728	0.00049829	-1.267	-0.0007036	-0.36971	-0.00020531	555.3330454072462	31.5	0.21722	31.495	31.447	31.664	-0.0044174	1158	85	0.92408	0.051422596	0.9225606	374.7304	0	20.852753						523	10	4	NaN	NaN	NaN	0.21451	1	12866	12866		24.4	6.4306	1	134770			30193	515	17394	17878	24082	24082					0.10325247693640449
VYKDLVLLL	9	Unmodified	_VYKDLVLLL_					0	0	0		nc|ENSG00000132635|Q9H1Q7-4|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000179715|ENST00000546455|PCED1B;ENSG00000132635|ENST00000360652|PCED1A	nc|ENSG00000132635|Q9H1Q7-4|PCED1A	nc|ENSG00000132635|Q9H1Q7-4|PCED1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.3417179807501	2	538.341718	1074.66888	0.9191	0.00049479	1.486	0.00079997	2.4051	0.0012948	538.3426662494686	30.1	0.12067	30.094	30.045	30.166	-0.0064106	1182	40	0.9093879	0.023888946	0.90786844	368.91562	0	9.691162						118	6	3	NaN	NaN	NaN	0.13999	1	11458	11458		30.035	0	1	11517			30194	2782	17395	17879	24083	24083					0.13453534210702855
VYKDLVLLL	9	Unmodified						0	0	0		nc|ENSG00000132635|Q9H1Q7-4|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000179715|ENST00000546455|PCED1B;ENSG00000132635|ENST00000360652|PCED1A	nc|ENSG00000132635|Q9H1Q7-4|PCED1A	nc|ENSG00000132635|Q9H1Q7-4|PCED1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.341718	1074.66888	1.9972	0.0010752	2.2765	0.0012255	4.2737	0.0023007	538.3428262359075	30.077	0.096579	30.077	30.053	30.149	0	1188	43	0.90571284	0.025725186	0.90571284	367.42477		10.436066	-0.0083813	0.00042826	-0.0010778	NaN	30.035	129	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13120			30195	2782	17395	17879							0.13453534210702855
VYKDSFELKF	10	Unmodified	_VYKDSFELKF_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.33462123015	2	638.334621	1274.65469	1.9166	0.0012235	-5.5953	-0.0035716	-3.6786	-0.0023482	638.8330738246073	22.694	0.12064	22.694	22.645	22.766	0	1113	43	0.9515937	0.025655925	0.9515937	385.27	0	10.387238						122	6	3	NaN	NaN	NaN	0.54523	1	18315	18315		25.694	11.269	1	12915			30196	3240	17396	17880	24084	24084					0.028348369917466698
VYKDSFELKF	10	Unmodified	_VYKDSFELKF_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.8921729756333	3	425.892173	1274.65469	1.5745	0.00067057	-3.7478	-0.0015962	-2.1733	-0.00092559	425.89038530040636	22.694	0.16883	22.694	22.645	22.814	0	1395	40	0.7784366	0.024070561	0.7784366	472.7423	0	14.617981						131	8	3	NaN	NaN	NaN	0.65008	1	18316	18316		11.467	8.4306	1	15992			30197	3240	17396	17880	24085	24085					0.028348369917466698
VYKDSFELKF	10	Unmodified	_VYKDSFELKF_					0	0	0		ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	ENSG00000139842|ENST00000375440|CUL4A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.8921729756333	3	425.892173	1274.65469	1.0231	0.00043573	-1.3194	-0.00056193	-0.29631	-0.0001262	425.8918063606632	22.741	0.14461	22.728	22.68	22.824	-0.01354	1395	43	0.7784366	0.02592069	0.77691716	472.74228	0	15.741608						160	7	3	NaN	NaN	NaN	0.53519	1	17505	17505		17.995	11.638	1	21725			30198	3240	17396	17880	24086	24086					0.028348369917466698
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.83406012415	2	565.83406	1129.65357	1.9424	0.0010991	-1.8112	-0.0010249	0.13114	7.4205E-05	565.8330885373573	22.163	0.096531	22.163	22.115	22.212	0	1131	55	0.94059354	0.03301817	0.94059354	381.33987	0	13.386383						154	5	3	NaN	NaN	NaN	0.40649	1	14086	14086		13.463	3.4115	1	18836			30199	4389	17397	17881	24087	24087					0.09392667413499112
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.83406012415	2	565.83406	1129.65357	1.074	0.0006077	-1.8181	-0.0010288	-0.74414	-0.00042106	565.8331434851484	22.308	0.19264	22.294	22.222	22.414	-0.013731	1134	49	0.9387595	0.029352665	0.93724006	380.5963	0	11.900299						257	9	3	NaN	NaN	NaN	0.31471	1	13632	13632		17.97	8.2237	1	26483			30200	4389	17397	17881	24088	24088					0.09392667413499112
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.5584655716333	3	377.558466	1129.65357	1.5552	0.00058717	-0.50285	-0.00018986	1.0523	0.00039732	377.5586210532684	22.332	0.14451	22.318	22.246	22.39	-0.013731	1485	34	0.72280174	0.020431578	0.7212823	439.5578	0	12.425049						88	7	2	NaN	NaN	NaN	0.36492	1	13633	13633		9.6116	0	1	6537			30201	4389	17397	17881	24089	24089					0.09392667413499112
VYKKSIFVF	9	Unmodified						0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	377.558466	1129.65357	1.6539	0.00062443	-1.67	-0.00063051	-0.016091	-6.0751E-06	377.55788473695446	22.139	0.096531	22.139	22.115	22.212	0	1488	31	0.7209441	0.018577218	0.7209441	438.42813		11.297333	-0.089411	-0.00044843	-0.00016909	NaN	9.6116	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7499.2			30202	4389	17397	17881							0.09392667413499112
VYKLYHPNI	9	Unmodified	_VYKLYHPNI_					0	0	0		ENST00000574215.5_1_3:27203940-27332977:-|nuORF	ENST00000574215.5_1_3:27203940-27332977:-|nuORF	ENST00000574215.5_1_3:27203940-27332977:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.8189413762001	2	573.818941	1145.62333	1.4372	0.00082472	0.091369	5.2429E-05	1.5286	0.00087715	573.8194432950437	19.9	0.12032	19.885	19.861	19.982	-0.014141	1527	37	0.69677675	0.022324085	0.6952573	282.44302	0	9.049225						72	6	2	NaN	NaN	NaN	0.67989	1	14173	14173		0.92586	0.32864	1	7504.1			30203	7654	17398	17882	24090	24090					0.0563430874833557
VYKNNDVRL	9	Unmodified	_VYKNNDVRL_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8091049714001	2	560.809105	1119.60366	1.4965	0.00083926	8.0134	0.004494	9.5099	0.0053333	560.8129792977315	24.212	0.024118	24.199	24.175	24.199	-0.012749	1191	55	0.90387505	0.03308952	0.9023556	366.4929	0	13.416748						108	2	4	NaN	NaN	NaN	0.56671	1	13266	13266		6.8632	1.9535	1	78629			30204	5172	17399	17883	24091	24091					0.04863932737566756
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.77727352675	2	546.777274	1091.53999	1.6009	0.00087533	-0.39531	-0.00021615	1.2056	0.00065918	546.7768999908427	16.23	0.09606	16.23	16.182	16.278	0	1275	91	0.85233563	0.055286467	0.85233563	345.70334	0	22.42395						199	5	3	NaN	NaN	NaN	0.030696	1	12467	12467		58.2	30.411	1	37750			30205	4416	17400	17884	24092	24092					-0.002114276995371256
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.77727352675	2	546.777274	1091.53999	1.9958	0.0010913	-2.6665	-0.001458	-0.67068	-0.00036671	546.7763940438259	16.251	0.19177	16.238	16.166	16.358	-0.012995	1275	58	0.85233563	0.035024226	0.8508162	345.70337	0	14.205658						280	9	3	NaN	NaN	NaN	0.032826	1	12149	12149		55.413	18.111	1	54285			30206	4416	17400	17884	24093	24093					-0.002114276995371256
VYKPPGLKW	9	Unmodified	_VYKPPGLKW_					0	0	0		ENST00000460320.1_1_9:131078140-131084687:-|nuORF;ENSG00000167112|ENST00000372890|TRUB2	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	363.21481031250005	3	363.21481	1086.6226	2.3789	0.00086404	-1.3989	-0.00050811	0.97995	0.00035593	363.21464944096584	19.779	0.072199	19.765	19.741	19.813	-0.014141	1479	31	0.72651637	0.018571138	0.7249969	442.02728	0	11.299042						54	4	2	NaN	NaN	NaN	0.56671	1	11943	11943		6.4299	0	1	3602.7			30207	4527	17401	17885	24094	24094					0.08275514099273096
VYKPPGLKW	9	Unmodified						0	0	0		ENST00000460320.1_1_9:131078140-131084687:-|nuORF;ENSG00000167112|ENST00000372890|TRUB2	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	363.21481	1086.6226	1.93	0.00070101	-2.932	-0.001065	-1.002	-0.00036394	363.21412826108644	19.732	0.072041	19.732	19.684	19.756	0	1476	34	0.72837335	0.020429373	0.72837335	443.15714		12.429657	-0.016499	-0.00083438	0.0016882	NaN	6.4299	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3586.1			30208	4527	17401	17885							0.08275514099273096
VYKPVSIYL	9	Unmodified	_VYKPVSIYL_					0	0	0		ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.31824288445	2	541.318243	1080.62193	1.3922	0.00075361	-1.2226	-0.00066182	0.16957	9.179E-05	541.3170024723161	24.164	0.0966	24.164	24.116	24.213	0	1212	49	0.8910048	0.02942884	0.8910048	361.4329	0	11.937683						139	5	3	NaN	NaN	NaN	0.13999	1	12028	12028		30.035	12.236	1	22102			30209	6622	17402	17886	24095	24095					0.08484674659553093
VYKPVSIYL	9	Unmodified	_VYKPVSIYL_					0	0	0		ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.31824288445	2	541.318243	1080.62193	1.3707	0.00074198	-0.055446	-3.0014E-05	1.3152	0.00071197	541.3187527284074	24.188	0.072372	24.175	24.151	24.224	-0.012749	1212	52	0.8910048	0.03126979	0.88948536	361.4329	0	12.684479						120	4	3	NaN	NaN	NaN	0.16939	1	11709	11709		27.296	8.1326	1	18145			30210	6622	17402	17886	24096	24096					0.08484674659553093
VYKTHIDVI	9	Unmodified	_VYKTHIDVI_					0	0	0		chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;ENSG00000104738|ENST00000649973|MCM4	chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.3109491686	2	544.310949	1086.60735	1.8816	0.0010242	3.219	0.0017521	5.1006	0.0027763	544.3143336866017	17.909	0.071939	17.909	17.885	17.957	0	1221	64	0.885486	0.03865248	0.885486	359.16928	0	15.678131						126	4	4	NaN	NaN	NaN	0.23499	1	12255	12255		23.086	12.481	1	11875			30211	156	17403	17887	24097	24097					0.06750602511419856
VYKTIMEQF	9	Unmodified	_VYKTIMEQF_					0	0	0		BAIAP2-TBCD|1|fusion;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.7968173381	2	579.796817	1157.57908	2.2626	0.0013118	-2.7335	-0.0015849	-0.47092	-0.00027304	579.7952211622961	22.887	0.19271	22.887	22.863	23.055	0	1209	79	0.892844	0.047806323	0.892844	361.8757	0	19.37622						374	9	5	NaN	NaN	NaN	0.00068417	1	15067	15067		114.98	61.844	1	89446			30212	61	17404	17888	24098	24098					0.006595365398197828
VYKTIMEQF	9	Unmodified	_VYKTIMEQF_					0	0	0		BAIAP2-TBCD|1|fusion;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7968173381	2	579.796817	1157.57908	1.6892	0.00097941	-2.2275	-0.0012915	-0.5383	-0.0003121	579.7956017511418	22.934	0.24096	22.921	22.872	23.113	-0.01354	1209	73	0.892844	0.044124186	0.8913246	361.8757	0	17.88382						409	11	4	NaN	NaN	NaN	0.011167	1	14569	14569		89.374	52.071	1	91541			30213	61	17404	17888	24099	24099					0.006595365398197828
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(42)EQF	0	0	1		BAIAP2-TBCD|1|fusion;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.79427464915	2	587.794275	1173.574	2.1528	0.0012654	-2.3221	-0.0013649	-0.16929	-9.9507E-05	587.7928946873478	18.892	0.071999	18.892	18.868	18.94	0	1203	70	0.8965218	0.042292476	0.8965218	363.30804	0	17.138672						284	4	4	NaN	NaN	NaN	0.061945	1	15601	15601		41.839	14.542	1	53645			30214	61	17404	17889	24100	24100		4			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(95)EQF	0	0	1		BAIAP2-TBCD|1|fusion;ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	BAIAP2-TBCD|1|fusion	BAIAP2-TBCD|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.79427464915	2	587.794275	1173.574	1.5441	0.00090764	-2.5077	-0.001474	-0.96354	-0.00056636	587.7927398369706	18.938	0.14419	18.924	18.828	18.972	-0.014059	1200	64	0.89836043	0.03861904	0.896841	364.05313	0	15.650055						302	7	4	NaN	NaN	NaN	0.0085768	1	15048	15048		95.291	53.452	1	64043			30215	61	17404	17889	24101	24101		4			-0.005847673228117856
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3051355092	2	549.305136	1096.59572	1.0967	0.00060244	-3.623	-0.0019901	-2.5263	-0.0013877	549.3041595702855	26.794	0.16894	26.783	26.687	26.856	-0.010645	1278	43	0.85049206	0.025808692	0.8489726	344.9358	0	10.467285						142	8	2	NaN	NaN	NaN	0.030696	1	12376	12376		58.2	30.411	1	27175			30216	5079	17405	17890	24102	24102					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3051355092	2	549.305136	1096.59572	1.1416	0.00062706	-0.79946	-0.00043915	0.3421	0.00018792	549.304615432778	27.204	0.07239	27.194	27.194	27.267	-0.010126	1272	58	0.854179	0.035009086	0.8526596	346.43112	0	14.1987						84	4	2	NaN	NaN	NaN	0.16939	1	12377	12377		27.296	12.871	1	11887			30217	5079	17405	17890	24103	24103					0.05128405488062526
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.8105850278501	2	502.810585	1003.60662	1.8726	0.00094157	-2.5312	-0.0012727	-0.65856	-0.00033113	502.8098670956511	23.489	0.12051	23.489	23.465	23.586	0	1281	70	0.84864825	0.042393148	0.84864825	344.58347	0	17.213226						181	6	3	NaN	NaN	NaN	0.27608	1	8749	8749		20.449	8.189	1	27926			30218	5332	17406	17891	24104	24104					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.8105850278501	2	502.810585	1003.60662	1.6637	0.0008365	-2.8508	-0.0014334	-1.1872	-0.00059692	502.80921265900764	23.537	0.12056	23.524	23.5	23.621	-0.01305	1281	67	0.84864825	0.0405522	0.8471288	344.58347	0	16.465729						221	6	4	NaN	NaN	NaN	0.04947	1	8575	8575		47.136	2.8334	1	31384			30219	5332	17406	17891	24105	24105					0.10495807862389483
VYLAGAKC	8	Unmodified	_VYLAGAKC_					0	0	0		ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.4334863825001	1	824.433486	823.42621	1.5462	0.0012747	0.73103	0.00060269	2.2772	0.0018774	824.4340076466007	35.12	0.3861	35.12	35.048	35.434	0	444	214	1.3554435	0.12724936	1.3554435	275.99908	0	25.910828						1435	17	4	NaN	NaN	NaN	0.69631	1	5069	5069		19.285	4.2718	1	558680			30220	5365	17407	17892	24106	24106					0.007433859338675575
VYLAGAKC	8	Unmodified	_VYLAGAKC_					0	0	0		ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4334863825001	1	824.433486	823.42621	1.4823	0.001222	-1.7217	-0.0014194	-0.23941	-0.00019737	824.4320550893661	36.517	0.1687	36.519	36.446	36.615	0.0016785	438	85	1.359022	0.050083876	1.3575026	276.72775	0	10.198212						243	8	2	NaN	NaN	NaN	0.75682	1	4947	4947		15.013	0	1	20439			30221	5365	17407	17892	24107	24107					0.007433859338675575
VYLAGAKC	8	Unmodified						0	0	0		ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	ENSG00000184697|ENST00000328796|CLDN6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	824.433486	823.42621	1.7287	0.0014252	0.18722	0.00015435	1.916	0.0015796	824.4349344753343	36.567	0.072304	36.567	36.543	36.615	0	444	79	1.3554435	0.0465163	1.3554435	275.99908		9.471771	0.024272	0.00096477	-0.0010296	NaN	15.013	127	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8754.4			30222	5365	17407	17892							0.007433859338675575
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.3291419217501	2	586.329142	1170.64373	1.744	0.0010225	3.7001	0.0021695	5.4441	0.003192	586.3326234571894	28.894	0.14479	28.894	28.846	28.991	0	1170	58	0.91673553	0.034888268	0.91673553	371.51025	0	14.13858						195	7	3	NaN	NaN	NaN	0.64158	1	15514	15514		12.049	1.4437	1	44431			30223	3279	17408	17893	24108	24108					0.06523479408133426
VYLAWILFF	9	Unmodified	_VYLAWILFF_					0	0	0		ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394971.7_1_16:31102457-31105584:-|nuORF	ENST00000394971.7_1_16:31102457-31105584:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3311532944501	2	586.331153	1170.64775	1.1227	0.00065829	-0.85211	-0.00049962	0.27061	0.00015867	586.3318198950471	28.918	0.16895	28.909	28.861	29.03	-0.0083504	1173	61	0.91489893	0.036726475	0.9133795	370.76596	0	14.883514						262	8	3	NaN	NaN	NaN	0.16059	1	14972	14972		27.861	3.2986	1	49479			30224	4545	17409	17894	24109	24109					0.06925568901851875
VYLCWVLFF	9	Unmodified	_VYLCWVLFF_					0	0	0		ENST00000523606.1_1_5:162945344-162945401:+|nuORF	ENST00000523606.1_1_5:162945344-162945401:+|nuORF	ENST00000523606.1_1_5:162945344-162945401:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.30936360735	2	595.309364	1188.60417	0.89036	0.00053004	-7.5297	-0.0044825	-6.6393	-0.0039524	595.3045553904619	27.277	0.16893	27.267	27.267	27.436	-0.010126	1161	67	0.9222442	0.040390372	0.92072475	373.67694	0	16.365479						336	8	4	NaN	NaN	NaN	0.36886	1	15508	15508		15.013	2.425	1	103570			30225	7412	17410	17895	24110	24110					0.01741636133033353
VYLDCLSVL	9	Unmodified	_VYLDCLSVL_					0	0	0		ENST00000271375.6_1_1:168213112-168213319:+|nuORF	ENST00000271375.6_1_1:168213112-168213319:+|nuORF	ENST00000271375.6_1_1:168213112-168213319:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1024.5383453845	1	1024.53835	1023.53107	1.5783	0.001617	2.0314	0.0020812	3.6097	0.0036983	1024.5408716027937	33.069	0.1448	33.069	33.021	33.166	0	117	64	1.5493695	0.037152052	1.5493695	314.47272	0	7.5407104						142	7	2	NaN	NaN	NaN	0.062072	1	9510	9510		41.785	0	1	14806			30226	6339	17411	17896	24111	24111					0.020244626197836624
VYLDDPNI	8	Unmodified	_VYLDDPNI_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.4672889314	1	948.467289	947.460012	1.1297	0.0010715	-9.9398	-0.0094276	-8.8101	-0.0083561	948.4582256339376	27.011	0.1448	27.001	26.88	27.025	-0.010126	318	73	1.4304334	0.042755723	1.428914	290.64224	0	8.687317						191	7	2	NaN	NaN	NaN	0.65542	1	6878	6878		21.835	4.0547	1	30723	+		30227	11358	17412	17897	24112	24112					-0.015819140933786002
VYLDDPNI	8	Unmodified						0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	948.467289	947.460012	1.1297	0.0010715	-9.9398	-0.0094276	-8.8101	-0.0083561	948.4582256339376	27.011	0.1448	27.001	26.88	27.025	-0.010126	318	73	1.4304334	0.042755723	1.428914	290.64224		8.687317	-0.19853	-0.00081446	-0.0052123	NaN	21.835	191	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30723	+		30228	11358	17412	17897							-0.015819140933786002
VYLDFRNNS	9	Unmodified	_VYLDFRNNS_					0	0	0		ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	ENSG00000162494|ENST00000376085|LRRC38	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2776376675001	2	564.277638	1126.54072	2.0331	0.0011472	-4.2004	-0.0023702	-2.1674	-0.001223	564.2751960273762	28.798	0.19307	28.798	28.701	28.894	0	1239	94	0.87444305	0.057033777	0.87444305	354.53262	0	23.123657						516	9	5	NaN	NaN	NaN	0.33629	1	13960	13960		16.584	1.1215	1	163340			30229	4139	17413	17898	24113	24113					-0.01748633050465287
VYLDGILQI	9	Unmodified	_VYLDGILQI_					0	0	0		nc|ENSG00000164542|Q8NCT3-5|MATCAP2;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2;nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5928237960002	1	1033.59282	1032.58555	1.0246	0.001059	1.1147	0.0011522	2.1393	0.0022111	1033.5934168263104	33.456	0.14478	33.456	33.407	33.552	0	66	115	1.579413	0.06716001	1.579413	320.53323	0	13.629761						335	7	3	NaN	NaN	NaN	0.028349	1	9899	9899		61.271	16.969	1	52431			30230	4327	17414	17899	24114	24114					0.07055797762882321
VYLDGILQI	9	Unmodified	_VYLDGILQI_					0	0	0		nc|ENSG00000164542|Q8NCT3-5|MATCAP2;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2;nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	nc|ENSG00000164542|Q8NCT3-5|MATCAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5928237960002	1	1033.59282	1032.58555	0.65819	0.00068031	1.4648	0.001514	2.123	0.0021943	1033.59312994243	33.43	0.19306	33.428	33.38	33.573	-0.0018501	66	112	1.579413	0.06538916	1.5778936	320.53323	0	13.270386						373	9	4	NaN	NaN	NaN	0.043119	1	9694	9694		49.833	12.531	1	48003			30231	4327	17414	17899	24115	24115					0.07055797762882321
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.3134918575502	2	524.313492	1046.61243	1.1951	0.00062662	-3.4277	-0.0017972	-2.2326	-0.0011706	524.8126144957398	26.964	0.24131	26.964	26.867	27.109	0	1239	82	0.87444305	0.04971218	0.87444305	354.85974	0	20.173798						450	11	4	NaN	NaN	NaN	0.042816	1	10504	10504		49.961	22.665	1	55320			30232	5600	17415	17900	24116	24116					0.09098906374060789
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.3134918575502	2	524.313492	1046.61243	1.07	0.00056102	-3.5242	-0.0018478	-2.4542	-0.0012867	524.8129203844728	26.987	0.21725	26.977	26.905	27.122	-0.010126	1239	73	0.87444305	0.044190943	0.8729236	354.85974	0	17.933228						397	10	3	NaN	NaN	NaN	0.11656	1	10295	10295		33.425	17.963	1	53971			30233	5600	17415	17900	24117	24117					0.09098906374060789
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.81131330935	2	603.811313	1205.60807	1.6182	0.00097706	-2.4738	-0.0014937	-0.85567	-0.00051666	603.8100963136739	25.057	0.096516	25.057	25.033	25.129	0	1164	73	0.9204082	0.044071734	0.9204082	372.87265	0	17.854218						220	5	3	NaN	NaN	NaN	0.009927	1	16627	16627		69.363	13.771	1	110700			30234	842	17416	17901	24118	24118					0.013493971604702892
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.81131330935	2	603.811313	1205.60807	1.3265	0.00080096	-2.7065	-0.0016342	-1.38	-0.00083327	603.8100502375607	25.057	0.16884	25.045	24.996	25.165	-0.012011	1167	64	0.91857195	0.038556516	0.9170525	372.12875	0	15.619904						253	8	3	NaN	NaN	NaN	0.00074833	1	15965	15965		78.289	51.558	1	114310			30235	842	17416	17901	24119	24119					0.013493971604702892
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.56925315859996	3	389.569253	1165.68593	1.883	0.00073358	-3.2076	-0.0012496	-1.3245	-0.00051599	389.56814129580334	25.419	0.2171	25.419	25.395	25.612	0	1425	55	0.7599118	0.03336644	0.7599118	461.95358	0	20.2836						307	10	4	NaN	NaN	NaN	0.040769	1	15334	15334		50.831	15.308	1	112540			30236	2624	17417	17902	24120	24120					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.8502415046	2	583.850242	1165.68593	2.3228	0.0013562	-1.8992	-0.0011088	0.42363	0.00024733	583.8492867190396	25.419	0.14477	25.419	25.395	25.539	0	1146	52	0.93142134	0.031195581	0.93142134	377.48047	0	12.642761						224	7	4	NaN	NaN	NaN	0.01564	1	15336	15336		78.289	36.505	1	69156			30237	2624	17417	17902	24121	24121					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.56925315859996	3	389.569253	1165.68593	2.0501	0.00079866	-1.8249	-0.00071093	0.2252	8.7732E-05	389.5686260807371	25.539	0.21716	25.528	25.431	25.648	-0.0116	1425	52	0.7599118	0.03151101	0.75839233	461.95358	0	19.1557						322	10	3	NaN	NaN	NaN	0.10945	1	14805	14805		34.454	11.336	1	110400			30238	2624	17417	17902	24122	24122					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.8502415046	2	583.850242	1165.68593	2.0837	0.0012166	-1.6665	-0.000973	0.41721	0.00024359	583.8493014257091	25.515	0.31366	25.503	25.431	25.745	-0.0116	1155	49	0.92591566	0.02936846	0.9243962	375.24915	0	11.902283						379	14	4	NaN	NaN	NaN	0.022185	1	14806	14806		79.199	36.204	1	75195			30239	2624	17417	17902	24123	24123					0.1097145481651296
VYLDPLVFREF	11	Unmodified	_VYLDPLVFREF_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3768203958499	2	699.37682	1396.73909	0.51138	0.00035765	-2.3096	-0.0016153	-1.7982	-0.0012576	699.3755836755884	31.742	0.072416	31.742	31.718	31.79	0	1023	49	1.0064877	0.02923578	1.0064877	407.11282	0	11.825562						103	4	3	NaN	NaN	NaN	0.2084	1	20043	20043		29.547	16.977	1	8791.2			30240	1575	17418	17903	24124	24124					0.056587878084883414
VYLDPLVFREF	11	Unmodified	_VYLDPLVFREF_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.3768203958499	2	699.37682	1396.73909	0.28212	0.00019731	-0.57929	-0.00040514	-0.29717	-0.00020784	699.3774061124626	31.765	0.096586	31.761	31.712	31.809	-0.0044155	1023	46	1.0064877	0.02740413	1.0049683	407.11282	0	11.084656						116	5	3	NaN	NaN	NaN	0.29813	1	19101	19101		25.694	7.7247	1	10254			30241	1575	17418	17903	24125	24125					0.056587878084883414
VYLDSYAVI	9	Unmodified	_VYLDSYAVI_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5455392524	1	1042.54554	1041.53826	1.6988	0.0017711	1.4225	0.0014831	3.1213	0.0032541	1042.546990450678	29.015	0.048275	29.015	29.015	29.063	0	81	34	1.5705823	0.01943183	1.5705823	318.705	0	3.9431152						45	3	2	NaN	NaN	NaN	0.45297	1	10278	10278		11.548	0.94349	1	2843.9			30242	4943	17419	17904	24126	24126					0.019155184918645318
VYLEENILI	9	Unmodified	_VYLEENILI_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3106148176001	2	553.310615	1104.60668	0.47278	0.00026159	-1.3686	-0.00075724	-0.89579	-0.00049565	553.3105662501486	31.187	0.096525	31.187	31.163	31.259	0	1197	58	0.9001988	0.034937263	0.9001988	365.0626	0	14.168304						107	5	3	NaN	NaN	NaN	0.23112	1	13051	13051		23.334	10.332	1	17662			30243	3804	17420	17905	24127	24127					0.05855763071735964
VYLEKFMTF	9	Oxidation (M)	_VYLEKFM(Oxidation (M))TF_		VYLEKFM(1)TF		VYLEKFM(90)TF	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.2991928515501	2	597.299193	1192.58383	1.1316	0.00067592	-1.4774	-0.00088248	-0.34582	-0.00020656	597.298724327927	24.381	0.24128	24.381	24.285	24.526	0	1179	88	0.9112251	0.053261995	0.9112251	369.19803	0	21.579987						532	11	5	NaN	NaN	NaN	0.010878	1	16218	16218		90.252	57.799	1	97814			30244	1354	17421	17906	24128	24128		150			-0.004755793174126666
VYLEKFMTF	9	Oxidation (M)	_VYLEKFM(Oxidation (M))TF_		VYLEKFM(1)TF		VYLEKFM(58)TF	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.2991928515501	2	597.299193	1192.58383	1.011	0.00060389	-1.1948	-0.00071365	-0.18377	-0.00010976	597.2983635308149	24.405	0.16901	24.393	24.344	24.513	-0.012747	1179	76	0.9112251	0.045915484	0.90970564	369.19803	0	18.603455						274	8	2	NaN	NaN	NaN	0.030696	1	15605	15605		58.2	23.746	1	64681			30245	1354	17421	17906	24129	24129		150			-0.004755793174126666
VYLESDYSKL	10	Unmodified	_VYLESDYSKL_					0	0	0		ENST00000480838.1_1_2:163066458-163099837:-|nuORF;ENSG00000078098|ENST00000188790|FAP	ENST00000480838.1_1_2:163066458-163099837:-|nuORF	ENST00000480838.1_1_2:163066458-163099837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1216.6095960722	1	1216.6096	1215.60232	1.2492	0.0015198	-6.8632	-0.0083498	-5.614	-0.00683	1216.6012868201083	33.913	0.096504	33.911	33.887	33.984	-0.0012474	63	91	1.5811787	0.052998543	1.5796592	320.25406	0	10.7344055						153	5	2	NaN	NaN	NaN	0.65442	1	16204	16204		11.17	0	1	11172			30246	877	17422	17907	24130	24130					0.0031425385814145557
VYLESRSCI	9	Unmodified	_VYLESRSCI_					0	0	0			REV__ENST00000223023.4_1_7:123349191-123389113:-|nuORF	REV__ENST00000223023.4_1_7:123349191-123389113:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	357.18306997443335	3	357.18307	1068.52738	2.8808	0.001029	-6.6927	-0.0023905	-3.8119	-0.0013616	357.18080827646975	16.035	0.047894	16.023	15.999	16.047	-0.012611	1497	31	0.71537006	0.018583238	0.7138506	435.33777	0	11.308807						44	3	2	NaN	NaN	NaN	0.54912	1	11209	11209		4.6175	1.6474	1	4382.9	+		30247	11473	17423	17908	24131	24131					-0.004142071540627512
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.81058502785	2	538.810585	1075.60662	1.7695	0.0009534	0.095546	5.1481E-05	1.865	0.0010049	538.81042400647	26.577	0.072424	26.577	26.553	26.625	0	1200	46	0.89836043	0.027576089	0.89836043	364.43805	0	11.186798						95	4	3	NaN	NaN	NaN	0.58547	1	11806	11806		6.0903	2.937	1	8880.8			30248	5507	17424	17909	24132	24132					0.07183807862361391
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.81058502785	2	538.810585	1075.60662	1.2663	0.00068228	-0.15286	-8.2363E-05	1.1134	0.00059991	539.311525396336	26.601	0.0965	26.59	26.566	26.663	-0.010645	1197	40	0.9001988	0.023899257	0.8986794	365.18384	0	9.695221						68	5	2	NaN	NaN	NaN	0.36886	1	11494	11494		15.013	6.7681	1	6680.6			30249	5507	17424	17909	24133	24133					0.07183807862361391
VYLGLFDINRW	11	Unmodified	_VYLGLFDINRW_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.3746120579	2	698.374612	1394.73467	0.57772	0.00040347	-2.2718	-0.0015866	-1.6941	-0.0011831	698.3727975951225	33.069	0.096504	33.069	33.045	33.142	0	1053	40	0.9882094	0.023773253	0.9882094	399.7251	0	9.61615						153	5	4	NaN	NaN	NaN	0.16151	1	20018	20018		33.907	21.859	1	14980			30250	3802	17425	17910	24134	24134					0.0530932338558614
VYLGLFDINRW	11	Unmodified	_VYLGLFDINRW_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3746120579	2	698.374612	1394.73467	0.4984	0.00034807	-2.4831	-0.0017341	-1.9847	-0.0013861	698.3729268132837	33.14	0.12058	33.138	33.09	33.21	-0.0024757	1047	46	0.99186665	0.027424872	0.9903472	401.2044	0	11.093201						115	6	2	NaN	NaN	NaN	0.16151	1	19081	19081		33.907	13.459	1	15233			30251	3802	17425	17910	24135	24135					0.0530932338558614
VYLGLPIFRF	10	Unmodified	_VYLGLPIFRF_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.86060922565	2	612.860609	1223.70667	1.0643	0.00065224	-1.9668	-0.0012054	-0.9025	-0.00055311	612.8592301251614	34.469	0.16893	34.469	34.421	34.589	0	1125	58	0.9442611	0.034843147	0.9442611	382.4718	0	14.11319						230	8	4	NaN	NaN	NaN	0.33935	1	17072	17072		26.115	10.652	1	27789			30252	1521	17426	17911	24136	24136					0.10376045196153427
VYLGLPIFRF	10	Unmodified	_VYLGLPIFRF_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.86060922565	2	612.860609	1223.70667	0.6819	0.00041791	-1.8381	-0.0011265	-1.1562	-0.0007086	612.8595865721218	34.516	0.12062	34.515	34.491	34.612	-0.0006485	1119	79	0.9479278	0.047682643	0.94640833	383.957	0	19.313782						206	6	3	NaN	NaN	NaN	0.12649	1	16386	16386		42.318	16.203	1	25505			30253	1521	17426	17911	24137	24137					0.10376045196153427
VYLGNPSATL	10	Unmodified	_VYLGNPSATL_					0	0	0			REV__ENSG00000065268|ENST00000585809|WDR18	REV__ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.7794818647001	2	517.779482	1033.54441	1.3937	0.00072163	-2.2731	-0.001177	-0.87943	-0.00045535	517.7779478827221	24.43	0.12063	24.43	24.406	24.526	0	1281	70	0.84864825	0.042411506	0.84864825	344.44846	0	17.213928						159	6	3	NaN	NaN	NaN	0.47445	1	9930	9930		20.513	0	1	19470	+		30254	8536	17427	17912	24138	24138					0.028980367233771176
VYLGNPSATL	10	Unmodified	_VYLGNPSATL_					0	0	0			REV__ENSG00000065268|ENST00000585809|WDR18	REV__ENSG00000065268|ENST00000585809|WDR18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.5516872628	1	1034.55169	1033.54441	1.4004	0.0014488	0.084558	8.748E-05	1.4849	0.0015363	1034.5514325698548	24.43	0.24119	24.43	24.381	24.623	0	189	64	1.5068626	0.03724277	1.5068626	305.8058	0	7.558136						273	11	4	NaN	NaN	NaN	0.19179	1	9934	9934		36.235	7.7395	1	50835	+		30255	8536	17427	17912	24139	24139					0.028980367233771176
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.8768572624333	3	408.876857	1223.60874	1.1674	0.00047734	-1.0391	-0.00042486	0.12835	5.2478E-05	408.87624574323917	20.405	0.096132	20.405	20.381	20.477	0	1434	43	0.75435036	0.025954425	0.75435036	458.31927	0	15.7691345						69	5	2	NaN	NaN	NaN	0.33629	1	17063	17063		10.965	8.1761	1	7214.7			30256	5743	17428	17913	24140	24140					0.005882366001742412
VYLHDFQRF	9	Unmodified						0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	408.876857	1223.60874	1.4187	0.00058005	-0.96989	-0.00039656	0.44877	0.00018349	408.8770814442924	20.477	0.072145	20.463	20.439	20.511	-0.014141	1434	37	0.75435036	0.022249103	0.7528309	458.31927		13.517853	0.029091	3.3E-05	-0.00075972	NaN	10.965	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5732.7			30257	5743	17428	17913							0.005882366001742412
VYLITIIAL	9	Unmodified	_VYLITIIAL_					0	0	0		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.6546957713	1	1018.6547	1017.64742	1.4838	0.0015115	1.6069	0.0016369	3.0908	0.0031484	1018.6558857159749	38.612	0.09613	38.612	38.564	38.66	0	93	46	1.5635144	0.026506305	1.5635144	317.36807	0	5.3803406						76	5	2	NaN	NaN	NaN	0.049695	1	9296	9296		47.04	5.5801	1	5271.2			30258	5503	17429	17914	24141	24141					0.13930149181976503
VYLLDVQGNI	10	Unmodified	_VYLLDVQGNI_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3136888228	2	567.313689	1132.61282	1.3207	0.00074924	6.777	0.0038447	8.0977	0.0045939	567.3182398688567	19.707	0.14438	19.693	19.621	19.765	-0.014141	1206	61	0.894683	0.03678602	0.89316356	362.71512	0	14.913483						168	7	3	NaN	NaN	NaN	0.19179	1	13748	13748		36.235	3.7821	1	20876			30259	352	17430	17915	24142	24142					0.05182281303223135
VYLLEVYRL	9	Unmodified	_VYLLEVYRL_					0	0	0		RLF-SMAP2|1|fusion;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.3422492970001	2	584.342249	1166.66995	1.1825	0.00069097	-2.6743	-0.0015627	-1.4918	-0.00087175	584.3403172261905	29.087	0.12068	29.079	29.055	29.175	-0.0077229	1134	46	0.9387595	0.027513683	0.93724006	380.45068	0	11.150452						160	6	3	NaN	NaN	NaN	0.11656	1	14848	14848		33.425	9.5749	1	25072			30260	13660	17431	17916	24143	24143					0.09327748579607942
VYLLLFLALC	10	Unmodified	_VYLLLFLALC_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3459460789	2	584.345946	1166.67734	1.7305	0.0010112	-8.4596	-0.0049433	-6.7292	-0.0039322	584.3411321118737	29.063	0.12063	29.063	29.039	29.16	0	1134	46	0.9387595	0.027513683	0.9387595	380.45068	0	11.150452						152	6	3	NaN	NaN	NaN	0.54036	1	15383	15383		17.78	0	1	22311			30261	1431	17432	17917	24144	24144					0.10066764855673682
VYLLLSTEQF	10	Unmodified	_VYLLLSTEQF_					0	0	0			REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.8291717115	2	606.829172	1211.64379	1.2592	0.00076409	-0.94063	-0.0005708	0.31853	0.00019329	606.8293257594551	28.556	0.12068	28.556	28.484	28.605	0	1134	46	0.9387595	0.027513683	0.9387595	380.2856	0	11.14563						147	6	3	NaN	NaN	NaN	0.60686	1	16768	16768		14.425	0.38343	1	17101	+		30262	12160	17433	17918	24145	24145					0.046434346174464736
VYLLNSTTL	9	Unmodified	_VYLLNSTTL_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1023.5720883539001	1	1023.57209	1022.56481	2.3208	0.0023755	-0.031256	-3.1993E-05	2.2896	0.0023436	1023.5728699114741	27.857	0.072401	27.857	27.833	27.905	0	126	40	1.544062	0.023003817	1.544062	313.3994	0	4.669098						70	4	2	NaN	NaN	NaN	0.13602	1	9468	9468		30.61	1.7145	1	6625.8			30263	7923	17434	17919	24146	24146					0.05443207383189019
VYLLNSTTL	9	Unmodified						0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1023.57209	1022.56481	1.4923	0.0015275	-1.1825	-0.0012104	0.30976	0.00031706	1023.5730666922766	27.88	0.072432	27.87	27.846	27.919	-0.009552	126	46	1.544062	0.026540041	1.5425426	313.3994		5.386841	0.0069143	-0.00058543	-0.00075972	NaN	30.61	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7424.1			30264	7923	17434	17919							0.05443207383189019
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.6233956428998	1	1062.6234	1061.61612	1.2881	0.0013688	-0.22922	-0.00024357	1.0589	0.0011252	1062.6224188277308	37.338	0.16846	37.338	37.193	37.362	0	57	55	1.5847093	0.03177893	1.5847093	321.49216	0	6.4470215						169	8	2	NaN	NaN	NaN	0.0088919	1	11199	11199		94.648	35.202	1	14490			30265	13695	17435	17920	24147	24147					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.6233956428998	1	1062.6234	1061.61612	1.2184	0.0012947	1.5088	0.0016033	2.7272	0.002898	1062.6243647634988	37.359	0.072174	37.362	37.338	37.41	0.0028229	60	52	1.582944	0.030011892	1.5814246	321.13403	0	6.088562						104	4	2	NaN	NaN	NaN	0.024986	1	10943	10943		65.672	24.212	1	8510.2			30266	13695	17435	17920	24148	24148					0.08777576147872423
VYLLTFPPL	9	Unmodified						0	0	0		SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1062.6234	1061.61612	1.1974	0.0012724	-0.16064	-0.0001707	1.0368	0.0011017	1062.6226113438881	37.455	0.16865	37.458	37.458	37.627	0.0028229	60	55	1.582944	0.03178227	1.5814246	321.13403		6.4477234	0.060288	3.378E-05	-0.0016423	NaN	94.648	168	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14075			30267	13695	17435	17920							0.08777576147872423
VYLMNKVRE	9	Unmodified	_VYLMNKVRE_					0	0	0			REV__ENSG00000109181|ENST00000265403|UGT2B10	REV__ENSG00000109181|ENST00000265403|UGT2B10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	384.54623121086667	3	384.546231	1150.61686	1.8248	0.00070172	-2.5969	-0.00099864	-0.77212	-0.00029692	384.54581681371513	15.628	0.19182	15.616	15.544	15.736	-0.012201	1473	43	0.7302302	0.025991142	0.7287108	443.97787	0	15.802521						169	9	3	NaN	NaN	NaN	0.3947	1	14336	14336		13.949	0	1	15839	+		30268	9053	17436	17921	24149	24149					0.047580475252971155
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.8002173068	2	521.800217	1041.58588	1.4953	0.00078024	-1.8757	-0.00097873	-0.38041	-0.0001985	521.7989898421705	24.985	0.048279	24.985	24.936	24.985	0	1179	37	0.9112251	0.022047758	0.9112251	369.8095	0	8.947815						77	3	3	NaN	NaN	NaN	0.020004	1	10294	10294		71.993	49.866	1	16265			30269	1592	17437	17922	24150	24150					0.0667521748271156
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.8002173068	2	521.800217	1041.58588	1.5378	0.00080242	-1.8335	-0.00095673	-0.29573	-0.00015431	521.7998443368559	25.009	0.048256	25.009	25.009	25.057	0	1170	31	0.91673553	0.018365204	0.91673553	372.04587	0	7.453308						48	3	2	NaN	NaN	NaN	0.020004	1	10295	10295		71.993	49.866	1	7817.8			30270	1592	17437	17922	24151	24151					0.0667521748271156
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENST00000480807.1_1_7:2294693-2297236:-|nuORF;ENSG00000106266|ENST00000222990|SNX8	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENST00000480807.1_1_7:2294693-2297236:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.8002173068	2	521.800217	1041.58588	1.4672	0.00076557	-0.89847	-0.00046882	0.5687	0.00029675	521.7999942178233	25.008	0.096504	24.996	24.948	25.045	-0.012011	1176	43	0.9130621	0.025716841	0.91154265	370.55502	0	10.43689						113	5	3	NaN	NaN	NaN	0.078597	1	10088	10088		38.918	22.501	1	22167			30271	1592	17437	17922	24152	24152					0.0667521748271156
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.3213168896501	2	537.321317	1072.62808	2.0415	0.001097	-1.8966	-0.0010191	0.14497	7.7897E-05	537.3203330542183	23.899	0.12057	23.899	23.851	23.971	0	1248	70	0.8689189	0.042342782	0.8689189	352.5069	0	17.177795						373	6	4	NaN	NaN	NaN	0.030391	1	11684	11684		58.599	29.704	1	142590			30272	794	17438	17923	24153	24153					0.09467192891088416
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.3213168896501	2	537.321317	1072.62808	1.5512	0.00083348	-0.72538	-0.00038976	0.8258	0.00044372	537.3210416491675	23.923	0.16882	23.91	23.861	24.03	-0.013048	1245	73	0.87076044	0.044186175	0.869241	353.254	0	17.925629						372	8	4	NaN	NaN	NaN	0.023074	1	11383	11383		68.108	18.275	1	131230			30273	794	17438	17923	24154	24154					0.09467192891088416
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.30533247445	2	592.305332	1182.59611	1.0987	0.00065077	-1.8856	-0.0011169	-0.78689	-0.00046608	592.3038320183535	32.876	0.24131	32.876	32.756	32.997	0	1176	70	0.9130621	0.042255938	0.9130621	369.97806	0	17.122345						376	11	3	NaN	NaN	NaN	0.17937	1	15925	15925		37.302	19.333	1	70270			30274	2674	17439	17924	24155	24155					0.012117804172703472
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.30533247445	2	592.305332	1182.59611	0.78606	0.00046559	-1.403	-0.00083098	-0.61689	-0.00036539	592.3042103449031	32.924	0.26543	32.921	32.752	33.018	-0.0024757	1173	70	0.91489893	0.042251408	0.9133795	370.72235	0	17.120514						414	12	3	NaN	NaN	NaN	0.21269	1	15322	15322		34.439	19.263	1	75651			30275	2674	17439	17924	24156	24156					0.012117804172703472
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.80751102265	2	518.807511	1035.60047	1.3214	0.00068555	-1.3053	-0.00067719	0.016109	8.3577E-06	518.8069745232939	37	0.12031	37	36.952	37.072	0	1281	49	0.84864825	0.029495716	0.84864825	344.43945	0	11.9713745						124	6	3	NaN	NaN	NaN	0.094712	1	10031	10031		36.586	8.7258	1	15015			30276	5058	17440	17925	24157	24157					0.08409289630844796
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.6077455787	1	1036.60775	1035.60047	1.3684	0.0014185	0.14189	0.00014708	1.5102	0.0015655	1036.6077019138656	37	0.14443	37	36.952	37.097	0	72	82	1.5758814	0.047696114	1.5758814	319.80423	0	9.679321						346	7	4	NaN	NaN	NaN	0.020004	1	10033	10033		71.993	30.533	1	50344			30277	5058	17440	17925	24158	24158					0.08409289630844796
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.6077455787	1	1036.60775	1035.60047	1.0571	0.0010958	-0.45952	-0.00047634	0.59759	0.00061946	1036.6067407243645	36.998	0.14424	37	36.952	37.096	0.0022507	72	85	1.5758814	0.049470544	1.5743619	319.80423	0	10.039398						313	7	3	NaN	NaN	NaN	0.02781	1	9823	9823		61.977	23.059	1	43750			30278	5058	17440	17925	24159	24159					0.08409289630844796
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.7820245536501	2	515.782025	1029.5495	1.6307	0.00084109	0.02332	1.2028E-05	1.654	0.00085312	515.782364109938	20.742	0.096458	20.742	20.694	20.79	0	1290	82	0.84311575	0.049765885	0.84311575	342.22034	0	20.199951						190	5	4	NaN	NaN	NaN	0.03623	1	9762	9762		52.758	16.523	1	29168			30279	366	17441	17926	24160	24160					0.035903405860153725
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.7820245536501	2	515.782025	1029.5495	0.89199	0.00046007	1.2894	0.00066503	2.1814	0.0011251	515.7827820765596	20.742	0.26505	20.728	20.608	20.873	-0.014088	1290	79	0.84311575	0.047925293	0.8415963	342.22034	0	19.45285						220	12	3	NaN	NaN	NaN	0.032764	1	9567	9567		55.494	23.933	1	34418			30280	366	17441	17926	24161	24161					0.035903405860153725
VYLQCRTRSH	10	Unmodified	_VYLQCRTRSH_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	631.8247634231	2	631.824763	1261.63497	1.4595	0.00092212	4.4692	0.0028237	5.9286	0.0037459	631.8287966236248	24.719	0.12065	24.719	24.671	24.791	0	1116	40	0.94976085	0.023827195	0.94976085	384.57043	0	9.647949						74	6	2	NaN	NaN	NaN	0.65442	1	18034	18034		11.17	0.81017	1	7051.6			30281	3364	17442	17927	24162	24162					0.01462182499994924
VYLQCRTRSH	10	Unmodified						0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	631.824763	1261.63497	1.3944	0.00088101	4.922	0.0031098	6.3164	0.0039909	631.8289448815489	24.719	0.096508	24.707	24.682	24.779	-0.012392	1113	40	0.9515937	0.023824632	0.95007426	385.31256		9.646881	-0.0062687	0.00028424	0.00015671	NaN	11.17	78	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7411.8			30282	3364	17442	17927							0.01462182499994924
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3106148176	2	577.310615	1152.60668	1.0067	0.00058121	-1.6668	-0.00096225	-0.66002	-0.00038104	577.309820573279	34.01	0.12073	34.01	33.986	34.107	0	1161	37	0.9222442	0.022028744	0.9222442	373.8108	0	8.928833						110	6	4	NaN	NaN	NaN	0.51576	1	14895	14895		8.962	0.67169	1	12258			30283	2989	17443	17928	24163	24163					0.036477630716944986
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3106148176	2	577.310615	1152.60668	0.94322	0.00054453	-1.635	-0.0009439	-0.69177	-0.00039936	577.310053831322	34.009	0.072426	34.008	33.984	34.056	-0.0012474	1158	34	0.92408	0.020191908	0.9225606	374.5549	0	8.184326						98	4	3	NaN	NaN	NaN	0.27608	1	14397	14397		20.449	2.6497	1	11026			30284	2989	17443	17928	24164	24164					0.036477630716944986
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.8325800677	2	629.83258	1257.65061	1.7344	0.0010924	-3.4674	-0.0021839	-1.733	-0.0010915	629.830039002232	26.215	0.12063	26.204	26.156	26.276	-0.011137	1095	82	0.9625867	0.04948193	0.96106726	389.7772	0	20.03653						260	6	4	NaN	NaN	NaN	0.013726	1	17184	17184		66.481	33.703	1	63541			30285	4688	17444	17929	24165	24165					0.03208792288683071
VYLRETTLI	9	Unmodified	_VYLRETTLI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.32405654385	2	554.324057	1106.63356	1.6026	0.00088834	-2.5887	-0.001435	-0.9861	-0.00054662	554.3222587918733	23.007	0.07213	23.007	22.983	23.055	0	1179	58	0.9112251	0.034918368	0.9112251	369.5258	0	14.160339						110	4	3	NaN	NaN	NaN	0.34922	1	13143	13143		15.822	6.2103	1	10990			30286	715	17445	17930	24166	24166					0.08450871682885008
VYLRETTLI	9	Unmodified						0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.324057	1106.63356	1.6537	0.00091671	-1.1955	-0.00066269	0.45827	0.00025403	554.3238347881647	23.055	0.07221	23.041	23.017	23.09	-0.013294	1179	46	0.9112251	0.027561188	0.90970564	369.5258		11.176819	0.017105	0.00043802	-0.00075972	NaN	15.822	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9523.2			30287	715	17445	17930							0.08450871682885008
VYLRVRPLLP	10	Unmodified	_VYLRVRPLLP_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;ENST00000503417.1_1_5:137515369-137517456:+|nuORF	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1225.777939225	1	1225.77794	1224.77066	1.4642	0.0017948	-7.1808	-0.0088021	-5.7166	-0.0070073	1225.7689971197508	37.504	0.048191	37.506	37.482	37.53	0.0028229	60	70	1.582944	0.040612817	1.5814246	320.58466	0	8.225098						135	3	3	NaN	NaN	NaN	0.77884	1	16423	16423		0.79988	0	1	10784			30288	1896	17446	17931	24167	24167					0.16726825353111963
VYLSLIPII	9	Unmodified	_VYLSLIPII_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1;nc|ENSG00000127526|Q96K37-3|SLC35E1;ENST00000488894.1_1_19:16677303-16683001:-|nuORF	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.6546957713	1	1030.6547	1029.64742	0.89807	0.0009256	0.68913	0.00071025	1.5872	0.0016359	1030.6550255901593	39.767	0.048229	39.767	39.742	39.791	0	87	85	1.5670487	0.04949677	1.5670487	318.03592	0	10.045471						103	3	2	NaN	NaN	NaN	0.056273	1	9779	9779		44.247	10.549	1	7162.2			30289	2537	17447	17932	24168	24168					0.13378149181994559
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.30259282025	2	527.302593	1052.59063	0.76748	0.00040469	-2.3228	-0.0012248	-1.5553	-0.00082012	527.3013114061318	33.311	0.12067	33.311	33.287	33.407	0	1230	40	0.8799654	0.023925126	0.8799654	357.07446	0	9.708405						110	6	3	NaN	NaN	NaN	0.030391	1	10754	10754		58.599	32.484	1	9777.5			30290	3252	17448	17933	24169	24169					0.06644101625443
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.5979091738998	1	1053.59791	1052.59063	1.5582	0.0016417	-1.7093	-0.0018009	-0.15109	-0.00015919	1053.5950587373857	33.311	0.14481	33.311	33.262	33.407	0	63	118	1.5811787	0.06891644	1.5811787	320.8112	0	13.982697						449	7	4	NaN	NaN	NaN	0.019103	1	10755	10755		73.133	14.897	1	79270			30291	3252	17448	17933	24170	24170					0.06644101625443
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.30259282025	2	527.302593	1052.59063	0.60752	0.00032035	-3.245	-0.0017111	-2.6375	-0.0013907	527.300794324473	33.309	0.12064	33.307	33.283	33.403	-0.0024757	1227	37	0.88180584	0.02208358	0.8802864	357.82126	0	8.96109						116	6	3	NaN	NaN	NaN	0.094712	1	10529	10529		36.586	16.138	1	9967.6			30292	3252	17448	17933	24171	24171					0.06644101625443
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.5979091738998	1	1053.59791	1052.59063	1.0726	0.0011301	-0.12798	-0.00013484	0.94464	0.00099527	1053.5974059605212	33.309	0.16888	33.307	33.259	33.428	-0.0024757	60	109	1.582944	0.063611746	1.5814246	321.16937	0	12.906433						389	8	4	NaN	NaN	NaN	0.025843	1	10531	10531		64.55	29.253	1	71406			30293	3252	17448	17933	24172	24172					0.06644101625443
VYLTGYNFTL	10	Unmodified	_VYLTGYNFTL_					0	0	0		ENSG00000124802|ENST00000379715|EEF1E1;nc|ENSG00000124802|O43324-2|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.8082393041501	2	595.808239	1189.60193	0.58016	0.00034566	5.1508	0.0030689	5.731	0.0034146	595.8109367637983	31.331	0.12066	31.326	31.253	31.374	-0.0050716	1128	67	0.9424274	0.040364265	0.94090796	381.8511	0	16.354706						150	6	3	NaN	NaN	NaN	0.44412	1	15532	15532		21.771	9.7224	1	13173			30294	2442	17449	17934	24173	24173					0.014708789289670676
VYLTGYNFTL	10	Unmodified						0	0	0		ENSG00000124802|ENST00000379715|EEF1E1;nc|ENSG00000124802|O43324-2|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	ENSG00000124802|ENST00000379715|EEF1E1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.808239	1189.60193	0.45613	0.00027177	8.4494	0.0050342	8.9056	0.005306	595.8128627612228	31.259	0.048244	31.259	31.235	31.284	0	1128	40	0.9424274	0.023842633	0.9424274	381.85107		9.660522	-0.033166	0.0012572	0.00075972	NaN	21.771	76	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6982.2			30295	2442	17449	17934							0.014708789289670676
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7951319289	2	561.795132	1121.57571	1.7487	0.00098239	-1.3091	-0.00073547	0.43952	0.00024692	561.7937994492382	23.803	0.16862	23.803	23.778	23.947	0	1191	61	0.90387505	0.036770105	0.90387505	366.48508	0	14.908813						167	8	3	NaN	NaN	NaN	0.023828	1	13748	13748		67.154	36.544	1	23487			30296	939	17450	17935	24174	24174					0.01978609757452432
VYLTHLDYV	9	Unmodified						0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.795132	1121.57571	1.5827	0.00088915	-1.9884	-0.0011171	-0.40574	-0.00022794	561.7937305042079	23.85	0.19292	23.837	23.765	23.958	-0.013048	1191	64	0.90387505	0.03861493	0.9023556	366.48508		15.656799	0.017415	-0.00032835	-0.00075972	NaN	67.154	197	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24654			30297	939	17450	17935							0.01978609757452432
VYLVSAMLL	9	Unmodified	_VYLVSAMLL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5798162687	1	1008.57982	1007.57254	1.3846	0.0013965	-0.57279	-0.0005777	0.81178	0.00081875	1008.5788781042962	34.782	0.096527	34.782	34.734	34.831	0	102	67	1.5582114	0.03890264	1.5582114	316.33395	0	7.8976746						150	5	3	NaN	NaN	NaN	0.02781	1	8903	8903		61.977	20.522	1	15312			30298	5340	17451	17936	24175	24175					0.06905643379104731
VYLVSAMLL	9	Unmodified						0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1008.57982	1007.57254	1.4706	0.0014832	-0.89385	-0.00090152	0.57676	0.00058171	1008.5782821489391	34.757	0.096367	34.756	34.732	34.828	-0.0006485	102	58	1.5582114	0.033592463	1.556692	316.33395		6.819641	-0.0131	-0.00014692	-0.00075972	NaN	61.977	162	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15106			30299	5340	17451	17936							0.06905643379104731
VYLWYLPDEFT	11	Unmodified	_VYLWYLPDEFT_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.3530109485499	2	723.353011	1444.69147	1.7845	0.0012908	-3.319	-0.0024008	-1.5345	-0.00111	723.3508758444555	23.103	0.072371	23.103	23.079	23.152	0	1044	70	0.99369496	0.042042315	0.99369496	401.8075	0	17.000122						178	4	3	NaN	NaN	NaN	0.32978	1	20348	20348		24.562	6.3285	1	24886			30300	3471	17452	17937	24176	24176					-0.013089111823546773
VYLWYLPDEFT	11	Unmodified						0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	723.353011	1444.69147	1.5513	0.0011221	-3.705	-0.00268	-2.1537	-0.0015579	723.3497712421402	23.127	0.14473	23.114	23.09	23.234	-0.013296	1041	64	0.9955231	0.03838235	0.99400365	402.54672		15.520172	0.005098	-0.00028481	0.00015434	NaN	24.562	155	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22116			30301	3471	17452	17937							-0.013089111823546773
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.7864496170499	2	640.78645	1279.55835	2.079	0.0013322	-3.4115	-0.0021861	-1.3325	-0.00085385	641.285378702911	28.436	0.3137	28.436	28.315	28.629	0	1125	94	0.9442611	0.05686772	0.9442611	382.28555	0	23.02298						529	14	4	NaN	NaN	NaN	0.12866	1	18407	18407		31.675	21.929	1	101580			30302	3460	17453	17938	24177	24177					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.7864496170499	2	640.78645	1279.55835	2.1507	0.0013782	-2.7278	-0.0017479	-0.57703	-0.00036975	640.7845854646099	28.194	0.26545	28.194	28.026	28.291	0	1125	82	0.9442611	0.04952991	0.9442611	382.28555	0	20.052277						367	12	3	NaN	NaN	NaN	0.16939	1	18408	18408		27.296	10.712	1	85936			30303	3460	17453	17938	24178	24178					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.7864496170499	2	640.78645	1279.55835	2.3264	0.0014907	0.50185	0.00032158	2.8282	0.0018123	640.787240115927	27.012	0.50672	27.012	26.867	27.374	0	1125	112	0.9442611	0.06787437	0.9442611	382.28552	0	27.479034						1481	22	7	NaN	NaN	NaN	8.9076E-05	1	18410	18410		123.58	87.342	1	1823400			30304	3460	17453	17938	24179	24179					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.7864496170499	2	640.78645	1279.55835	1.8631	0.0011939	-3.0542	-0.0019571	-1.1911	-0.00076324	640.7844849471395	28.387	0.36198	28.378	28.161	28.523	-0.0089779	1125	103	0.9442611	0.062367678	0.94274163	382.28555	0	25.249664						589	16	3	NaN	NaN	NaN	0.31471	1	17588	17588		17.97	2.1478	1	149150			30305	3460	17453	17938	24180	24180					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.7864496170499	2	640.78645	1279.55835	1.8389	0.0011784	-2.0121	-0.0012894	-0.17321	-0.00011099	640.784976354624	26.794	0.072412	26.783	26.783	26.856	-0.010645	1107	37	0.9552588	0.021988392	0.9537394	386.738	0	8.902008						52	4	2	NaN	NaN	NaN	0.63698	1	17589	17589		3.9685	0.7569	1	6885.7			30306	3460	17453	17938	24181	24181					-0.0702505383985681
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.7864496170499	2	640.78645	1279.55835	2.638	0.0016904	-0.23628	-0.0001514	2.4018	0.001539	640.7868132270213	27.035	0.55506	27.025	26.88	27.436	-0.010124	1125	121	0.9442611	0.07338959	0.94274163	382.28552	0	29.711884						1421	24	5	NaN	NaN	NaN	0.00012056	1	17591	17591		121.66	87.205	1	1710100			30307	3460	17453	17938	24182	24182					-0.0702505383985681
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(130)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.7839069280999	2	648.783907	1295.55326	2.1357	0.0013856	0.60872	0.00039493	2.7444	0.0017805	648.7843367712297	24.357	0.45828	24.357	24.237	24.695	0	1128	139	0.9424274	0.08436167	0.9424274	381.49286	0	34.149445						1408	20	6	NaN	NaN	NaN	2.212E-07	1	18695	18695		133.34	101.78	1	2278200			30308	3460	17453	17939	24183	24183		388			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(110)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.7839069280999	2	648.783907	1295.55326	2.4131	0.0015656	0.50877	0.00033008	2.9219	0.0018957	648.7842311209408	24.357	0.50672	24.344	24.224	24.73	-0.012747	1128	151	0.9424274	0.09173703	0.94090796	381.49286	0	37.13501						1418	22	6	NaN	NaN	NaN	0.0035249	1	17854	17854		106.42	73.647	1	2177200			30309	3460	17453	17939	24184	24184		388			-0.08269357702488378
VYMELSQKL	9	Unmodified	_VYMELSQKL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.7968173381	2	555.796817	1109.57908	1.7016	0.00094574	-4.2286	-0.0023502	-2.527	-0.0014045	555.7941469300291	21.826	0.19276	21.826	21.778	21.97	0	1224	67	0.883646	0.040495276	0.883646	358.33008	0	16.421326						246	9	2	NaN	NaN	NaN	0.00065562	1	13262	13262		115.07	44.47	1	114160			30310	3242	17454	17940	24185	24185					0.028675365398157737
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(53)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.79427464915	2	563.794275	1125.574	2.7316	0.00154	-2.9385	-0.0016567	-0.20692	-0.00011666	563.7928131809729	18.532	0.19186	18.532	18.484	18.676	0	1206	85	0.894683	0.051494837	0.894683	362.74243	0	20.878204						412	9	4	NaN	NaN	NaN	0.03618	1	13912	13912		52.78	20.327	1	117770			30311	3242	17454	17941	24186	24186		361			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(92)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.79427464915	2	563.794275	1125.574	2.0256	0.001142	-1.5705	-0.00088546	0.45508	0.00025657	563.793957140578	18.554	0.21593	18.54	18.468	18.684	-0.01395	1209	67	0.892844	0.04046464	0.8913246	361.99683	0	16.406067						366	10	4	NaN	NaN	NaN	0.010404	1	13482	13482		91.563	33.328	1	112800			30312	3242	17454	17941	24187	24187		361			0.016232326772069428
VYMGEESGEQR	11	Unmodified	_VYMGEESGEQR_					0	0	0			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.7798841827	2	642.779884	1283.54522	2.1746	0.0013978	5.5883	0.003592	7.7629	0.0049899	642.7820957349824	25.515	0.072374	25.515	25.467	25.539	0	1137	58	0.9369253	0.034861922	0.9369253	379.303	0	14.113434						104	4	3	NaN	NaN	NaN	0.63477	1	18487	18487		11.739	0.56853	1	15344	+		30313	10237	17455	17942	24188	24188					-0.08521536689886489
VYMHPICHF	9	Unmodified	_VYMHPICHF_					0	0	0			REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense	REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1146.5223181648	1	1146.52232	1145.51504	2.2895	0.0026249	0.85908	0.00098495	3.1486	0.0036099	1146.5225049849919	32.201	0.31368	32.201	31.983	32.297	0	69	52	1.5776473	0.030024648	1.5776473	319.75854	0	6.0854187						260	14	2	NaN	NaN	NaN	0.16059	1	14632	14632		27.861	1.7457	1	20876	+		30314	13030	17456	17943	24189	24189					-0.0518952209811232
VYMHPICHF	9	Unmodified						0	0	0			REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense	REV__L1MB3_dup10872|chr11:12959837-12960206:-|1.7237213190969694|0.2100936896188283|3.04|511.0|32|3|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1146.52232	1145.51504	2.2895	0.0026249	0.85908	0.00098495	3.1486	0.0036099	1146.5225049849919	32.201	0.31368	32.201	31.983	32.297	0	69	52	1.5776473	0.030024648	1.5776473	319.75854		6.0854187	0.18374	7.6081E-05	-0.00012317	NaN	27.861	260	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20876	+		30315	13030	17456	17943							-0.0518952209811232
VYMIALVLL	9	Unmodified	_VYMIALVLL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.6318518392	1	1034.63185	1033.62458	0.99949	0.0010341	-1.9896	-0.0020585	-0.99007	-0.0010244	1034.6289688972051	40.657	0.24009	40.657	40.537	40.777	0	96	73	1.5617468	0.04242134	1.5617468	316.94382	0	8.60907						396	11	3	NaN	NaN	NaN	0.16059	1	9945	9945		27.861	0	1	37237	+		30316	9788	17457	17944	24190	24190					0.10910806792867334
VYMIALVLL	9	Unmodified	_VYMIALVLL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.6318518392	1	1034.63185	1033.62458	0.95971	0.00099294	-2.3061	-0.002386	-1.3464	-0.001393	1034.628921751732	40.631	0.24025	40.637	40.493	40.733	0.0067558	90	70	1.5652816	0.040638685	1.5637622	317.66116	0	8.247284						383	11	3	NaN	NaN	NaN	0.10053	1	9742	9742		35.745	7.884	1	35428	+		30317	9788	17457	17944	24191	24191					0.10910806792867334
VYMIALVLL	9	Unmodified						0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.63185	1033.62458	0.99949	0.0010341	-1.9896	-0.0020585	-0.99007	-0.0010244	1034.6289688972051	40.657	0.24009	40.657	40.537	40.777	0	96	73	1.5617468	0.04242134	1.5617468	316.94382		8.60907	0.0096485	0.00019479	-0.0010076	NaN	35.745	396	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37237	+		30318	9788	17457	17944							0.10910806792867334
VYMIALVLL	9	Unmodified						0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1034.63185	1033.62458	0.95971	0.00099294	-2.3061	-0.002386	-1.3464	-0.001393	1034.628921751732	40.631	0.24025	40.637	40.493	40.733	0.0067558	90	70	1.5652816	0.040638685	1.5637622	317.66116		8.247284	-0.0096485	-0.00013273	0.0010076	NaN	35.745	383	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35428	+		30319	9788	17457	17944							0.10910806792867334
VYMIRVYLL	9	Unmodified	_VYMIRVYLL_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.3411950520001	2	585.341195	1168.66784	2.0137	0.0011787	-2.9539	-0.001729	-0.94021	-0.00055034	585.3393641670573	30.246	0.14478	30.246	30.222	30.366	0	1155	46	0.92591566	0.027531445	0.92591566	375.23795	0	11.15744						145	7	3	NaN	NaN	NaN	0.04947	1	15451	15451		47.136	30.552	1	46246			30320	3976	17458	17945	24192	24192					0.09024996570155963
VYMIRVYLL	9	Unmodified	_VYMIRVYLL_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.3411950520001	2	585.341195	1168.66784	1.0577	0.00061914	-2.2212	-0.0013002	-1.1635	-0.00068105	585.339771419656	30.293	0.19304	30.287	30.238	30.431	-0.0064106	1152	49	0.92775106	0.02936846	0.9262317	375.98178	0	11.9019165						157	9	2	NaN	NaN	NaN	0.18779	1	14912	14912		26.115	10.94	1	46785			30321	3976	17458	17945	24193	24193					0.09024996570155963
VYMLAASLL	9	Unmodified	_VYMLAASLL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	980.5485161403002	1	980.548516	979.54124	1.3014	0.0012761	0.41897	0.00041082	1.7204	0.0016869	980.5494461516844	33.311	0.21722	33.311	33.262	33.48	0	141	73	1.5352125	0.042493343	1.5352125	311.78528	0	8.629944						400	10	5	NaN	NaN	NaN	0.056273	1	7876	7876		44.247	10.549	1	87780			30322	3448	17459	17946	24194	24194					0.05065070345028744
VYMLAASLL	9	Unmodified						0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	980.548516	979.54124	1.2192	0.0011955	0.20567	0.00020167	1.4249	0.0013971	980.5486643062047	33.309	0.16888	33.307	33.259	33.428	-0.0024757	138	94	1.5369828	0.054895997	1.5354633	312.1448		11.148773	-0.0018995	-0.00011711	0.00012542	NaN	44.247	352	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80805			30323	3448	17459	17946							0.05065070345028744
VYMLAASLL	9	Oxidation (M)	_VYM(Oxidation (M))LAASLL_		VYM(1)LAASLL		VYM(47)LAASLL	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.5434307624002	1	996.543431	995.536154	2.1423	0.0021349	-0.41282	-0.00041139	1.7295	0.0017235	996.5442954232328	29.932	0.048239	29.932	29.884	29.932	0	156	103	1.5263584	0.060269117	1.5263584	309.918	0	12.237274						231	3	4	NaN	NaN	NaN	0.049695	1	8422	8422		47.04	15.479	1	35724			30324	3448	17459	17947	24195	24195		387			0.03820766482419913
VYMNNVWTN	9	Unmodified	_VYMNNVWTN_					0	0	0			REV__ENSG00000155026|ENST00000404406|RSPH10B	REV__ENSG00000155026|ENST00000404406|RSPH10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.7607661828001	2	570.760766	1139.50698	1.4811	0.00084538	4.2845	0.0024454	5.7656	0.0032908	570.7629248940992	32.514	0.19302	32.514	32.418	32.611	0	1200	97	0.89836043	0.058876753	0.89836043	364.1795	0	23.867584						409	9	3	NaN	NaN	NaN	0.39244	1	14419	14419		14.042	0.092821	1	44992	+		30325	10103	17460	17948	24196	24196					-0.05719377813875326
VYMPDHSYVTI	11	Unmodified	_VYMPDHSYVTI_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.81573837275	2	662.815738	1323.61692	1.8239	0.0012089	-1.5605	-0.0010343	0.26336	0.00017456	662.8154736960373	23.489	0.16869	23.489	23.441	23.61	0	1116	49	0.94976085	0.029327333	0.94976085	384.37543	0	11.868988						201	8	5	NaN	NaN	NaN	0.085722	1	19148	19148		40.957	12.061	1	23597			30326	1674	17461	17949	24197	24197					-0.03193997265361759
VYMPDHSYVTI	11	Unmodified	_VYMPDHSYVTI_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	662.81573837275	2	662.815738	1323.61692	2.2404	0.0014849	-1.9261	-0.0012767	0.31424	0.00020829	662.8138734537857	23.513	0.14474	23.5	23.476	23.62	-0.013294	1116	40	0.94976085	0.023827195	0.9482414	384.37543	0	9.643036						180	7	4	NaN	NaN	NaN	0.085722	1	18294	18294		40.957	24.373	1	22785			30327	1674	17461	17949	24198	24198					-0.03193997265361759
VYMPDHSYVTI	11	Oxidation (M)	_VYM(Oxidation (M))PDHSYVTI_		VYM(1)PDHSYVTI		VYM(58)PDHSYVTI	0	0	1		ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.8131956838	2	670.813196	1339.61184	1.2537	0.00084101	-0.34623	-0.00023226	0.90749	0.00060875	670.8128069884817	21.224	0.12048	21.224	21.127	21.248	0	1119	40	0.9479278	0.023829699	0.9479278	383.58624	0	9.642914						95	6	3	NaN	NaN	NaN	0.027106	1	19402	19402		58.2	42.378	1	10840			30328	1674	17461	17950	24199	24199		188			-0.04438301127993327
VYMPSVLTL	9	Oxidation (M)	_VYM(Oxidation (M))PSVLTL_		VYM(1)PSVLTL		VYM(44)PSVLTL	0	0	1		ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5539954486999	1	1038.554	1037.54672	1.2691	0.001318	-3.3103	-0.003438	-2.0413	-0.00212	1038.5510024834882	34.805	0.2893	34.804	34.732	35.021	-0.0006485	132	97	1.5405227	0.056657672	1.5390033	312.62097	0	11.49765						445	13	3	NaN	NaN	NaN	0.056143	1	9896	9896		44.302	10.604	1	60375			30329	5246	17462	17951	24200	24200		544			0.029447491368273404
VYMQQIGNAKI	11	Unmodified	_VYMQQIGNAKI_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.22879070223337	3	422.228791	1263.66454	1.7967	0.0007586	5.0021	0.002112	6.7988	0.0028706	422.2306904411836	18.05	0.12003	18.036	17.964	18.084	-0.013786	1446	34	0.7469324	0.020404935	0.74541295	453.65207	0	12.393036						82	6	2	NaN	NaN	NaN	0.65577	1	17289	17289		4.9007	0	1	8925			30330	1266	17463	17952	24201	24201					0.04325701725497311
VYMSCFPFFI	10	Unmodified	_VYMSCFPFFI_					0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	627.2903135744501	2	627.290314	1252.56607	0.87227	0.00054717	-1.8186	-0.0011408	-0.94636	-0.00059364	627.289590480731	29.569	0.24129	29.562	29.442	29.683	-0.0070667	1152	73	0.92775106	0.044038475	0.9262317	375.68787	0	17.83316						299	11	2	NaN	NaN	NaN	0.26902	1	17073	17073		29.598	9.085	1	51325	+		30331	13282	17464	17953	24202	24202					-0.050106178439136784
VYMSCFPFFI	10	Unmodified						0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.290314	1252.56607	1.5332	0.00096178	-2.4545	-0.0015397	-0.92124	-0.00057789	627.2877312671228	29.57	0.21724	29.57	29.474	29.691	0	1155	73	0.92591566	0.044043243	0.92591566	374.94464		17.835083	0.0039531	-0.00050362	-0.000158	NaN	29.598	289	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45726	+		30332	13282	17464	17953							-0.050106178439136784
VYMSCFPFFI	10	Unmodified						0	0	0			REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	REV__OR52N4|p.S30F|1|0.2|ENSG00000181074|chr11:5754829-5754829|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.290314	1252.56607	0.87227	0.00054717	-1.8186	-0.0011408	-0.94636	-0.00059364	627.289590480731	29.569	0.24129	29.562	29.442	29.683	-0.0070667	1152	73	0.92775106	0.044038475	0.9262317	375.68787		17.83316	-0.0039531	0.00029409	0.000158	NaN	29.598	299	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51325	+		30333	13282	17464	17953							-0.050106178439136784
VYNEAGVTF	9	Unmodified	_VYNEAGVTF_					0	0	0		nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	999.4781879687	1	999.478188	998.470912	2.0783	0.0020773	-2.4398	-0.0024385	-0.36145	-0.00036126	999.4741365978625	23.272	0.072351	23.258	23.258	23.331	-0.013294	216	52	1.4908947	0.030180931	1.4893752	302.70517	0	6.1278076						89	4	2	NaN	NaN	NaN	0.03618	1	8334	8334		52.78	24.113	1	9356.5			30334	3645	17465	17954	24203	24203					-0.028385117190964593
VYNEKIHDLL	10	Unmodified	_VYNEKIHDLL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.3376952353501	2	622.337695	1242.66084	1.6761	0.0010431	-0.19088	-0.00011879	1.4852	0.00092429	622.3364369274392	19.564	0.04801	19.564	19.54	19.588	0	1098	34	0.960755	0.020150542	0.960755	389.08643	0	8.1605835						58	3	3	NaN	NaN	NaN	0.57672	1	17603	17603		19.592	9.9802	1	3700.1			30335	2167	17466	17955	24204	24204					0.04921355223291357
VYNENLVHMI	10	Unmodified	_VYNENLVHMI_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3106232051001	2	616.310623	1230.60669	1.2113	0.00074655	-1.8155	-0.0011189	-0.60416	-0.00037235	616.3104488029954	24.068	0.193	24.068	23.995	24.188	0	1149	82	0.92958635	0.04955131	0.92958635	376.50427	0	20.069458						385	9	5	NaN	NaN	NaN	0.0049332	1	17270	17270		77.761	35.443	1	142010			30336	2108	17467	17956	24205	24205					0.0006143980008346261
VYNENLVHMI	10	Unmodified	_VYNENLVHMI_					0	0	0		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.3106232051001	2	616.310623	1230.60669	1.1664	0.0007189	-1.7809	-0.0010976	-0.61445	-0.00037869	616.3100851867069	24.092	0.24125	24.079	23.982	24.224	-0.012749	1146	82	0.93142134	0.049562037	0.9299019	377.2475	0	20.073792						349	11	3	NaN	NaN	NaN	0.013678	1	16559	16559		66.544	29.241	1	130540			30337	2108	17467	17956	24206	24206					0.0006143980008346261
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(120)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.3080805161501	2	624.308081	1246.60161	1.7633	0.0011009	-0.38691	-0.00024155	1.3764	0.00085931	624.3084548689079	20.309	0.1923	20.309	20.261	20.453	0	1149	130	0.92958635	0.07883853	0.92958635	376.45068	0	31.92694						463	9	5	NaN	NaN	NaN	2.9664E-05	1	17681	17681		115.07	64.755	1	208610			30338	2108	17467	17957	24207	24207		243			-0.011828640625481057
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(110)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.3080805161501	2	624.308081	1246.60161	1.3674	0.00085368	4.681	0.0029224	6.0484	0.0037761	624.3133761183611	20.333	0.26479	20.319	20.271	20.535	-0.014141	1152	73	0.92775106	0.04405272	0.9262317	375.70743	0	17.839844						364	12	4	NaN	NaN	NaN	9.0848E-05	1	16945	16945		110.61	68.288	1	220050			30339	2108	17467	17957	24208	24208		243			-0.011828640625481057
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3218482059001	2	595.321848	1188.62914	1.5471	0.00092103	0.87076	0.00051838	2.4179	0.0014394	595.3223535290275	26.77	0.12114	26.77	26.722	26.843	0	1170	64	0.91673553	0.038569033	0.91673553	371.4448	0	15.627502						248	6	3	NaN	NaN	NaN	0.0021892	1	16126	16126		85.344	41.042	1	339420			30340	5805	17468	17958	24209	24209					0.04237407260006876
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3218482059001	2	595.321848	1188.62914	2.1832	0.0012997	-1.1381	-0.00067754	1.0451	0.00062216	595.3205424056824	36.493	0.096386	36.494	36.446	36.543	0.0016747	1173	31	0.91489893	0.018367171	0.9133795	370.70065	0	7.4420776						32	5	2	NaN	NaN	NaN	0.5917	1	15515	15515		15.463	2.4598	1	2275.6			30341	5805	17468	17958	24210	24210					0.04237407260006876
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3218482059001	2	595.321848	1188.62914	1.2015	0.0007153	0.21405	0.00012743	1.4156	0.00084273	595.3222624725198	26.77	0.19309	26.759	26.735	26.928	-0.010645	1170	67	0.91673553	0.040412188	0.9152161	371.4448	0	16.374298						358	9	4	NaN	NaN	NaN	0.00032785	1	15516	15516		95.62	62.194	1	296550			30342	5805	17468	17958	24211	24211					0.04237407260006876
VYNIHLAVNFL	11	Unmodified	_VYNIHLAVNFL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.8638801961001	2	651.86388	1301.71321	1.6938	0.0011041	-2.3895	-0.0015576	-0.69572	-0.00045351	651.8619893783793	29.884	0.16891	29.884	29.86	30.029	0	1083	58	0.9699114	0.034798086	0.9699114	392.59875	0	14.08548						243	8	5	NaN	NaN	NaN	0.009927	1	18814	18814		69.363	48.914	1	52231			30343	5805	17469	17959	24212	24212					0.07441938356896571
VYNIHLAVNFL	11	Unmodified	_VYNIHLAVNFL_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8638801961001	2	651.86388	1301.71321	0.73714	0.00048051	-1.5332	-0.00099944	-0.79607	-0.00051893	651.8632079470137	29.907	0.2413	29.9	29.852	30.093	-0.0070667	1083	52	0.9699114	0.031128407	0.96839195	392.59875	0	12.600067						295	11	5	NaN	NaN	NaN	2.932E-07	1	17979	17979		93.929	70.811	1	59310			30344	5805	17469	17959	24213	24213					0.07441938356896571
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8189413762001	2	543.818941	1085.62333	2.0603	0.0011205	-3.2	-0.0017402	-1.1397	-0.00061977	543.8174849283339	18.268	0.095835	18.268	18.245	18.34	0	1209	34	0.892844	0.020231187	0.892844	362.15796	0	8.206238						98	5	3	NaN	NaN	NaN	0.58159	1	12212	12212		6.2502	3.7887	1	7892.7			30345	4459	17470	17960	24214	24214					0.08394308748324875
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	362.88171973966666	3	362.88172	1085.62333	2.2189	0.00080519	-0.94959	-0.00034459	1.2693	0.0004606	362.8816286541491	18.268	0.07185	18.268	18.245	18.316	0	1497	31	0.71537006	0.018583238	0.71537006	435.25064	0	11.306519						55	4	2	NaN	NaN	NaN	0.13602	1	12217	12217		21.85	13.573	1	5371.2			30346	4459	17470	17960	24215	24215					0.08394308748324875
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.5606518102667	3	441.560652	1321.66013	1.3568	0.0005991	-1.5097	-0.00066664	-0.15294	-6.7533E-05	441.56030444638475	20.165	0.26436	20.165	20.117	20.381	0	1407	58	0.77102906	0.03519529	0.77102906	468.06546	0	21.365875						373	12	5	NaN	NaN	NaN	0.013201	1	19132	19132		53.652	29.158	1	115640			30347	2006	17471	17961	24216	24216					0.012162373025830675
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.8373394821001	2	661.837339	1321.66013	1.6306	0.0010792	-1.0235	-0.00067737	0.60709	0.0004018	661.8370318708149	20.165	0.19221	20.165	20.117	20.309	0	1053	46	0.9882094	0.027430713	0.9882094	399.94196	0	11.101624						274	9	4	NaN	NaN	NaN	1.9686E-08	1	19133	19133		130.62	79.152	1	50729			30348	2006	17471	17961	24217	24217					0.012162373025830675
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	441.5606518102667	3	441.560652	1321.66013	1.2864	0.00056803	-1.9144	-0.00084534	-0.62801	-0.00027731	441.5595723055422	20.333	0.31287	20.319	20.222	20.535	-0.014141	1407	43	0.77102906	0.025931954	0.7695096	468.06546	0	15.742432						470	14	4	NaN	NaN	NaN	0.039846	1	18276	18276		43.776	28.816	1	113560			30349	2006	17471	17961	24218	24218					0.012162373025830675
VYNNIMRHYL	10	Unmodified	_VYNNIMRHYL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.8373394821001	2	661.837339	1321.66013	1.742	0.0011529	-1.3547	-0.00089659	0.38732	0.00025634	661.8369585923285	20.357	0.28887	20.343	20.246	20.535	-0.014141	1053	43	0.9882094	0.025603354	0.98669	399.94196	0	10.36203						350	13	4	NaN	NaN	NaN	0.00021511	1	18277	18277		102.05	73.551	1	50104			30350	2006	17471	17961	24219	24219					0.012162373025830675
VYNNIMRHYL	10	Oxidation (M)	_VYNNIM(Oxidation (M))RHYL_		VYNNIM(1)RHYL		VYNNIM(45)RHYL	0	0	1		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	669.8347967931501	2	669.834797	1337.65504	1.7481	0.0011709	-0.87514	-0.0005862	0.87297	0.00058474	669.8345539430476	16.278	0.24	16.278	16.206	16.446	0	1065	43	0.9808926	0.02561444	0.9808926	396.9316	0	10.365234						317	11	4	NaN	NaN	NaN	0.10581	1	19368	19368		45.165	27.366	1	52951			30351	2006	17471	17962	24220	24220		225			-0.00028066560025763465
VYNNIMRHYL	10	Oxidation (M)	_VYNNIM(Oxidation (M))RHYL_		VYNNIM(1)RHYL		VYNNIM(64)RHYL	0	0	1		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.8347967931501	2	669.834797	1337.65504	1.8835	0.0012616	-0.60301	-0.00040392	1.2805	0.0008577	669.8345203907019	16.395	0.28766	16.382	16.286	16.574	-0.012993	1065	46	0.9808926	0.027445495	0.97937316	396.9316	0	11.106201						362	13	4	NaN	NaN	NaN	0.019347	1	18502	18502		63.958	46.159	1	51071			30352	2006	17471	17962	24221	24221		225			-0.00028066560025763465
VYNNSRMLHF	10	Unmodified	_VYNNSRMLHF_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;ATXN2L|p.Q1002Kfs*50|1|0.09|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.8138643858	2	640.813864	1279.61318	2.5208	0.0016154	-3.7265	-0.002388	-1.2057	-0.00077263	640.8103511079265	18.556	0.071993	18.556	18.532	18.604	0	1119	31	0.9479278	0.01832962	0.9479278	383.76984	0	7.4207764						63	4	2	NaN	NaN	NaN	0.28676	1	18414	18414		28.296	18.052	1	5357.7			30353	4625	17472	17963	24222	24222					-0.01544622248570704
VYNNSRMLHF	10	Unmodified	_VYNNSRMLHF_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;ATXN2L|p.Q1002Kfs*50|1|0.09|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.54500174606665	3	427.545002	1279.61318	1.4747	0.00063049	-2.1514	-0.00091983	-0.67675	-0.00028934	427.8787615281161	18.698	0.11992	18.684	18.612	18.731	-0.014059	1425	34	0.7599118	0.020387232	0.75839233	461.47308	0	12.380615						126	6	3	NaN	NaN	NaN	0.41241	1	17596	17596		14.959	9.9425	1	13381			30354	4625	17472	17963	24223	24223					-0.01544622248570704
VYNNSRMLHF	10	Unmodified	_VYNNSRMLHF_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;ATXN2L|p.Q1002Kfs*50|1|0.09|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.8138643858	2	640.813864	1279.61318	2.4626	0.0015781	-1.3201	-0.00084596	1.1425	0.00073214	640.813179095243	18.698	0.16795	18.684	18.612	18.78	-0.014059	1116	28	0.94976085	0.016497552	0.9482414	384.51196	0	6.6790466						95	8	2	NaN	NaN	NaN	0.20007	1	17597	17597		35.523	20.06	1	7300.9			30355	4625	17472	17963	24224	24224					-0.01544622248570704
VYNPMPFEL	9	Oxidation (M)	_VYNPM(Oxidation (M))PFEL_		VYNPM(1)PFEL		VYNPM(40)PFEL	0	0	1		nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	nc|ENSG00000167632|Q96Q05-3|TRAPPC9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1125.5285089796998	1	1125.52851	1124.52123	1.119	0.0012594	-0.56509	-0.00063603	0.55387	0.0006234	1125.5258571101876	27.808	0.072418	27.798	27.774	27.846	-0.009552	102	91	1.5582114	0.053026676	1.556692	315.8895	0	10.749847						146	4	2	NaN	NaN	NaN	0.070055	1	13433	13433		40.154	22.355	1	10018			30356	4556	17473	17964	24225	24225		483			-0.03604725385616803
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5047370701999	1	1004.50474	1003.49746	1.6038	0.001611	-1.3929	-0.0013991	0.21096	0.00021191	1004.502331380466	20.405	0.072104	20.405	20.357	20.429	0	294	43	1.4446791	0.024924874	1.4446791	293.30176	0	5.0603333						72	4	2	NaN	NaN	NaN	0.084037	1	8723	8723		38.131	14.796	1	6932.1			30357	1838	17474	17965	24226	24226					-0.0041482282778133595
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.30259282025	2	557.302593	1112.59063	0.79173	0.00044123	-2.5806	-0.0014382	-1.7889	-0.00099694	557.3009597948748	33.335	0.21721	33.335	33.287	33.504	0	1233	97	0.87812483	0.058908522	0.87812483	356.0793	0	23.88742						350	10	4	NaN	NaN	NaN	0.078597	1	13386	13386		38.918	24.876	1	53891			30358	588	17475	17966	24227	24227					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	ENST00000462265.5_1_1:241755332-241761290:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.30259282025	2	557.302593	1112.59063	0.74952	0.00041771	-1.6909	-0.00094236	-0.94141	-0.00052465	557.3018895321779	33.334	0.14476	33.331	33.283	33.428	-0.0024757	1230	97	0.8799654	0.058902204	0.878446	356.82568	0	23.884827						304	7	4	NaN	NaN	NaN	0.020004	1	13006	13006		71.993	51.544	1	50758			30359	588	17475	17966	24228	24228					0.03884101625453695
VYNPVRAEW	9	Unmodified	_VYNPVRAEW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.2905480775	2	567.290548	1132.56654	1.7193	0.00097534	-2.0294	-0.0011513	-0.31016	-0.00017595	567.2895947974008	21.32	0.14437	21.32	21.248	21.392	0	1239	64	0.87444305	0.038664997	0.87444305	354.50983	0	15.675262						270	7	3	NaN	NaN	NaN	0.05973	1	14186	14186		48.002	16.327	1	43258			30360	4416	17476	17967	24229	24229					0.005562611917866889
VYNPVRAEW	9	Unmodified	_VYNPVRAEW_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.2905480775	2	567.290548	1132.56654	1.2326	0.00069926	-0.51663	-0.00029308	0.71601	0.00040619	567.2903720860558	21.32	0.14427	21.306	21.258	21.402	-0.014006	1239	79	0.87444305	0.04786837	0.8729236	354.50983	0	19.406403						303	7	3	NaN	NaN	NaN	0.094469	1	13738	13738		40.957	14.842	1	47381			30361	4416	17476	17967	24230	24230					0.005562611917866889
VYNQIKEFI	9	Unmodified	_VYNQIKEFI_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3162315117501	2	577.316232	1152.61791	1.6597	0.00095817	-5.6173	-0.003243	-3.9576	-0.0022848	577.8135720180796	23.658	0.19279	23.645	23.621	23.813	-0.013048	1185	64	0.90755045	0.03859818	0.906031	367.85498	0	15.644897						194	9	3	NaN	NaN	NaN	0.090258	1	14401	14401		37.231	18.067	1	35711			30362	3461	17477	17968	24231	24231					0.04770585165852026
VYNQIKEFI	9	Unmodified						0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.316232	1152.61791	2.1144	0.0012207	-2.0256	-0.0011694	0.088719	5.1219E-05	577.3135542863981	23.465	0.048288	23.465	23.417	23.465	0	1197	37	0.9001988	0.022064447	0.9001988	364.87515		8.943329	-0.089752	0.002559	-0.0029161	NaN	37.231	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3077			30363	3461	17477	17968							0.04770585165852026
VYNSAVGLYW	10	Unmodified	_VYNSAVGLYW_					0	0	0		ENST00000577734.1_1_18:46570427-46619646:-|nuORF;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM	ENST00000577734.1_1_18:46570427-46619646:-|nuORF	ENST00000577734.1_1_18:46570427-46619646:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.2927564154501	2	586.292756	1170.57096	1.8056	0.0010586	-2.9513	-0.0017303	-1.1458	-0.00067175	586.291884083638	29.594	0.24133	29.594	29.546	29.787	0	1212	73	0.8910048	0.04414797	0.8910048	361.08307	0	17.891144						395	11	4	NaN	NaN	NaN	0.5917	1	15505	15505		15.463	1.0377	1	58198			30364	3337	17478	17969	24232	24232					-0.007502743852910498
VYNSAVGLYW	10	Unmodified	_VYNSAVGLYW_					0	0	0		ENST00000577734.1_1_18:46570427-46619646:-|nuORF;nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM	ENST00000577734.1_1_18:46570427-46619646:-|nuORF	ENST00000577734.1_1_18:46570427-46619646:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.2927564154501	2	586.292756	1170.57096	1.111	0.00065136	-1.8385	-0.0010779	-0.72751	-0.00042654	586.2920369753627	29.593	0.24129	29.586	29.514	29.755	-0.0070667	1209	73	0.892844	0.04414797	0.8913246	361.82843	0	17.891144						345	11	3	NaN	NaN	NaN	0.047882	1	14963	14963		53.14	23.542	1	58120			30365	3337	17478	17969	24233	24233					-0.007502743852910498
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.26419594125	2	611.264196	1220.51384	1.258	0.00076898	-1.1126	-0.00068012	0.14537	8.8861E-05	611.2633868489761	20.67	0.28922	20.67	20.622	20.911	0	1161	67	0.9222442	0.040399075	0.9222442	373.5648	0	16.364075						668	13	5	NaN	NaN	NaN	0.014943	1	16987	16987		78.398	46.722	1	314860			30366	1881	17479	17970	24234	24234					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.26419594125	2	611.264196	1220.51384	1.0589	0.00064725	-0.70485	-0.00043085	0.35403	0.0002164	611.2638714202476	20.67	0.45768	20.656	20.608	21.065	-0.014086	1161	70	0.9222442	0.0422377	0.92072475	373.5648	0	17.108826						797	20	5	NaN	NaN	NaN	0.030391	1	16301	16301		58.599	30.81	1	319380			30367	1881	17479	17970	24235	24235					-0.08759741661674525
VYNTATNQWF	10	Unmodified	_VYNTATNQWF_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.29074504275	2	622.290745	1242.56694	1.8937	0.0011784	-1.2165	-0.00075703	0.67714	0.00042138	622.7908786696786	26.384	0.19309	26.384	26.288	26.481	0	1146	91	0.93142134	0.055042148	0.93142134	377.2072	0	22.290985						338	9	3	NaN	NaN	NaN	0.16973	1	17588	17588		38.131	17.618	1	83860			30368	7983;1833	17480	17971	24236	24236					-0.04464363879014854
VYNTATNQWF	10	Unmodified	_VYNTATNQWF_					0	0	0		nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	nc|ENSG00000172534|P51610-4|HCFC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.29074504275	2	622.290745	1242.56694	1.1459	0.00071306	1.1096	0.0006905	2.2555	0.0014036	622.7922416362263	26.384	0.19302	26.373	26.252	26.445	-0.011137	1146	109	0.93142134	0.06603634	0.9299019	377.2072	0	26.743439						474	9	4	NaN	NaN	NaN	0.10581	1	16842	16842		45.165	25.828	1	71578			30369	7983;1833	17480	17971	24237	24237					-0.04464363879014854
VYNTATNQWFL	11	Unmodified	_VYNTATNQWFL_					0	0	0		nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.83277703295	2	678.832777	1355.651	1.7688	0.0012007	-2.8806	-0.0019555	-1.1118	-0.00075472	678.8316373833734	30.077	0.19312	30.077	30.029	30.222	0	1095	40	0.9625867	0.023809195	0.9625867	389.471	0	9.633392						196	9	4	NaN	NaN	NaN	0.13649	1	19616	19616		36.235	0	1	23821			30370	1833	17481	17972	24238	24238					-0.012598327821024213
VYNTATNQWFL	11	Unmodified	_VYNTATNQWFL_					0	0	0		nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;ENSG00000111727|ENST00000229330|HCFC2	nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.83277703295	2	678.832777	1355.651	0.88743	0.00060242	-4.5117	-0.0030627	-3.6243	-0.0024603	678.8302416103245	30.076	0.19309	30.07	30.021	30.214	-0.0064087	1092	37	0.9644182	0.02197653	0.96289873	390.21207	0	8.891907						184	9	4	NaN	NaN	NaN	0.25335	1	18726	18726		27.296	0	1	23157			30371	1833	17481	17972	24239	24239					-0.012598327821024213
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5557100082001	1	1022.55571	1021.54843	2.4335	0.0024884	-0.49201	-0.0005031	1.9415	0.0019853	1022.5549367821947	32.587	0.31368	32.587	32.49	32.804	0	129	154	1.5422925	0.09038925	1.5422925	313.0444	0	18.34665						1191	14	4	NaN	NaN	NaN	0.01663	1	9440	9440		76.264	34.804	1	258760			30372	3404	17482	17973	24240	24240					0.038521262170888804
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1022.5557100082001	1	1022.55571	1021.54843	1.625	0.0016617	-0.18528	-0.00018946	1.4397	0.0014722	1022.5554690431978	32.586	0.28963	32.583	32.486	32.776	-0.0031052	129	151	1.5422925	0.08861232	1.540773	313.0444	0	17.985962						1227	13	4	NaN	NaN	NaN	0.013314	1	9243	9243		82.858	38.556	1	267440			30373	3404	17482	17973	24241	24241					0.038521262170888804
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5451453218998	1	1028.54515	1027.53787	1.3229	0.0013607	1.0603	0.0010906	2.3833	0.0024513	1028.5447641397361	31.187	0.33783	31.187	31.091	31.428	0	138	103	1.5369828	0.06020522	1.5369828	311.94244	0	12.219116						683	15	3	NaN	NaN	NaN	0.055365	1	9677	9677		44.632	20.782	1	156060			30374	5	17483	17974	24242	24242					0.025201435626513558
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5451453218998	1	1028.54515	1027.53787	1.3122	0.0013497	0.99188	0.0010202	2.3041	0.0023698	1028.5452496026626	31.186	0.33781	31.181	31.084	31.422	-0.0050716	138	112	1.5369828	0.06551397	1.5354633	311.94244	0	13.29657						721	15	3	NaN	NaN	NaN	0.055365	1	9489	9489		44.632	13.071	1	160240			30375	5	17483	17974	24243	24243					0.025201435626513558
VYPANERFWYF	11	Unmodified	_VYPANERFWYF_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	746.35641930475	2	746.356419	1490.69829	1.5874	0.0011848	-4.2437	-0.0031673	-2.6563	-0.0019825	746.8549976811823	29.667	0.096523	29.667	29.667	29.763	0	993	46	1.0247463	0.027377605	1.0247463	414.242	0	11.067108						67	5	2	NaN	NaN	NaN	0.61402	1	20553	20553		13.101	6.6712	1	4486.3			30376	3762	17484	17975	24244	24244					-0.027435535111180798
VYPANERFWYF	11	Unmodified	_VYPANERFWYF_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	746.35641930475	2	746.356419	1490.69829	1.803	0.0013457	-1.7003	-0.001269	0.10268	7.6637E-05	746.3548345652678	28.701	0.33784	28.701	28.605	28.943	0	987	85	1.0283957	0.051107645	1.0283957	415.71722	0	20.659698						979	15	5	NaN	NaN	NaN	0.00024841	1	20554	20554		80.241	51.745	1	215180			30377	3762	17484	17975	24245	24245					-0.027435535111180798
VYPANERFWYF	11	Unmodified	_VYPANERFWYF_					0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	746.35641930475	2	746.356419	1490.69829	1.6718	0.0012477	-1.3344	-0.00099591	0.33741	0.00025183	746.3553996142277	28.725	0.43435	28.716	28.62	29.054	-0.0083504	984	82	1.03022	0.049274445	1.0287007	416.4547	0	19.91861						1085	19	5	NaN	NaN	NaN	0.14916	1	19546	19546		35.056	17.087	1	210530			30378	3762	17484	17975	24246	24246					-0.027435535111180798
VYPANERFWYF	11	Unmodified						0	0	0		nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	nc|ENSG00000152061|Q5R372-2|RABGAP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	746.356419	1490.69829	1.8324	0.0013677	-1.8725	-0.0013975	-0.040051	-2.9892E-05	746.8561957579288	29.955	0.072378	29.949	29.925	29.997	-0.0064106	981	40	1.0320443	0.023717046	1.0305248	417.1921		9.587372	0.14113	0.002005	0.0028893	NaN	13.101	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3849			30379	3762	17484	17975							-0.027435535111180798
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7929235909501	2	524.792924	1047.57129	1.8832	0.00098831	-1.7015	-0.00089291	0.18178	9.5396E-05	524.7919197444553	15.556	0.31169	15.544	15.496	15.807	-0.012201	1269	49	0.8560222	0.029489279	0.85450274	347.3802	0	11.96698						470	14	4	NaN	NaN	NaN	0.030696	1	10327	10327		58.2	2.706	1	156780			30380	5777	17485	17976	24247	24247					0.049411453345555856
VYPARTQTL	9	Unmodified						0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	524.792924	1047.57129	1.6956	0.00088982	-2.2376	-0.0011743	-0.54201	-0.00028444	524.7918827085886	15.534	0.26413	15.534	15.486	15.75	0	1266	55	0.85786515	0.033171892	0.85786515	348.1281		13.461395	-0.0049027	-0.00036905	0.0016812	NaN	58.2	463	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140510			30381	5777	17485	17976							0.049411453345555856
VYPASKMFPFI	11	Unmodified	_VYPASKMFPFI_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.3439347062	2	650.343935	1298.67332	1.1971	0.00077854	-0.65507	-0.00042602	0.54205	0.00035252	650.3445463065364	30.584	0.072412	30.584	30.56	30.632	0	1086	58	0.9680805	0.03480178	0.9680805	391.86728	0	14.087372						155	4	3	NaN	NaN	NaN	0.37105	1	18756	18756		23.086	15.498	1	16237			30382	4986	17486	17977	24248	24248					0.035926753619605734
VYPASKMFPFI	11	Unmodified						0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	650.343935	1298.67332	0.85147	0.00055375	-0.20736	-0.00013486	0.64411	0.00041889	650.3432470838419	30.607	0.12065	30.601	30.553	30.673	-0.0057545	1089	58	0.96624947	0.034798086	0.96473	391.12607		14.085846	0.0086746	0.00028953	-0.0016753	NaN	23.086	208	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15845			30383	4986	17486	17977							0.035926753619605734
VYPAVMVLL	9	Unmodified	_VYPAVMVLL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	502.7960890566	2	502.796089	1003.57763	0.84527	0.000425	-2.7233	-0.0013693	-1.878	-0.00094426	502.79536688015156	35.482	0.12061	35.482	35.41	35.53	0	1281	67	0.84864825	0.040587306	0.84864825	344.5836	0	16.47998						123	6	3	NaN	NaN	NaN	0.10053	1	8746	8746		35.745	20.569	1	10776			30384	1582	17487	17978	24249	24249					0.07597947241731617
VYPAVMVLL	9	Unmodified	_VYPAVMVLL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5849016466001	1	1004.5849	1003.57763	1.1598	0.0011651	-1.9442	-0.0019531	-0.7844	-0.000788	1004.5839787448067	35.506	0.24125	35.506	35.361	35.603	0	150	94	1.5299006	0.054936647	1.5299006	310.60324	0	11.153351						523	11	3	NaN	NaN	NaN	0.10053	1	8747	8747		35.745	7.0781	1	72598			30385	1582	17487	17978	24250	24250					0.07597947241731617
VYPAVMVLL	9	Unmodified	_VYPAVMVLL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	502.7960890566	2	502.796089	1003.57763	0.67533	0.00033955	-2.7836	-0.0013996	-2.1083	-0.00106	502.7943314265879	35.456	0.12046	35.457	35.385	35.505	0.00053024	1278	37	0.85049206	0.022124112	0.8489726	345.33224	0	8.983246						97	6	2	NaN	NaN	NaN	0.48931	1	8572	8572		10.052	0	1	9397.6			30386	1582	17487	17978	24251	24251					0.07597947241731617
VYPAVMVLL	9	Unmodified	_VYPAVMVLL_					0	0	0		ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	ENSG00000105983|ENST00000353442|LMBR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5849016466001	1	1004.5849	1003.57763	0.98433	0.00098884	-1.466	-0.0014727	-0.48167	-0.00048387	1004.5837616796401	35.456	0.24109	35.457	35.336	35.577	0.00053024	147	109	1.5316714	0.06379402	1.530152	310.96274	0	12.951599						462	11	3	NaN	NaN	NaN	0.055365	1	8573	8573		44.632	8.046	1	69852			30387	1582	17487	17978	24252	24252					0.07597947241731617
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.19781933316665	3	357.197819	1068.57163	2.0237	0.00072286	-2.4653	-0.0008806	-0.44159	-0.00015774	357.19707830760086	16.47	0.21577	16.47	16.422	16.638	0	1473	46	0.7302302	0.027849138	0.7302302	444.3806	0	16.94754						355	10	4	NaN	NaN	NaN	0.062072	1	11502	11502		30.035	21.116	1	115780			30388	5582	17488	17979	24253	24253					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2930907664501	2	535.293091	1068.57163	2.4467	0.0013097	-1.3346	-0.00071438	1.1121	0.00059532	535.2925780979717	16.47	0.38376	16.47	16.422	16.806	0	1191	97	0.90387505	0.058863997	0.90387505	366.70572	0	23.881348						584	17	5	NaN	NaN	NaN	0.024221	1	11503	11503		66.656	27.198	1	304300			30389	5582	17488	17979	24254	24254					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	357.19781933316665	3	357.197819	1068.57163	2.3159	0.00082724	-1.375	-0.00049115	0.94091	0.00033609	357.1975425711656	16.539	0.26368	16.526	16.454	16.717	-0.012995	1473	46	0.7302302	0.027849138	0.7287108	444.3806	0	16.94757						371	12	4	NaN	NaN	NaN	0.14301	1	11222	11222		25.801	6.6826	1	123710			30390	5582	17488	17979	24255	24255					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.2930907664501	2	535.293091	1068.57163	1.947	0.0010422	-0.65215	-0.00034909	1.2948	0.0006931	535.293013073063	16.539	0.28762	16.526	16.454	16.741	-0.012995	1191	73	0.90387505	0.044128895	0.9023556	366.7057	0	17.90329						576	13	5	NaN	NaN	NaN	0.019103	1	11223	11223		73.133	33.674	1	330420			30391	5582	17488	17979	24256	24256					0.04008565054414248
VYPEESLVI	9	Unmodified	_VYPEESLVI_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.5561039386998	1	1048.5561	1047.54883	2.2812	0.002392	-1.4505	-0.001521	0.8307	0.00087104	1048.5544247967498	27.929	0.14478	27.929	27.881	28.026	0	138	109	1.5369828	0.063780546	1.5369828	311.86353	0	12.941467						380	7	2	NaN	NaN	NaN	0.014943	1	10536	10536		78.398	44.7	1	71610			30392	5621	17489	17980	24257	24257					0.026955011462860057
VYPEESLVI	9	Unmodified	_VYPEESLVI_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1048.5561039386998	1	1048.5561	1047.54883	1.3559	0.0014217	-1.2703	-0.001332	0.085585	8.974E-05	1048.5547860191787	27.952	0.21717	27.943	27.87	28.088	-0.009552	135	103	1.5387528	0.060224295	1.5372335	312.2227	0	12.21991						437	10	3	NaN	NaN	NaN	0.043119	1	10320	10320		49.833	24.872	1	70197			30393	5621	17489	17980	24258	24258					0.026955011462860057
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3397066080499	2	598.339707	1194.66486	1.9321	0.001156	-1.7335	-0.0010372	0.19862	0.00011885	598.3386590806781	18.173	0.16784	18.173	18.125	18.292	0	1131	46	0.94059354	0.027510703	0.94059354	381.08957	0	11.146179						230	8	5	NaN	NaN	NaN	0.042793	1	16305	16305		54.277	26.488	1	49380			30394	3044	17490	17981	24259	24259					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.2288965608999	3	399.228897	1194.66486	1.7748	0.00070855	-1.4384	-0.00057425	0.33641	0.00013431	399.228161917062	18.173	0.11992	18.173	18.149	18.268	0	1473	40	0.7302302	0.024135947	0.7302302	443.78427	0	14.668182						134	6	3	NaN	NaN	NaN	0.50283	1	16306	16306		12.15	6.4523	1	22765			30395	3044	17490	17981	24260	24260					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.2288965608999	3	399.228897	1194.66486	1.9623	0.00078342	-1.4013	-0.00055944	0.56103	0.00022398	399.22862944340545	18.29	0.095974	18.276	18.228	18.324	-0.01395	1470	37	0.7320868	0.02227813	0.73056734	444.9126	0	13.539124						127	5	3	NaN	NaN	NaN	0.4422	1	15670	15670		22.269	7.819	1	21451			30396	3044	17490	17981	24261	24261					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.3397066080499	2	598.339707	1194.66486	1.7392	0.0010406	-0.69647	-0.00041673	1.0427	0.0006239	598.3393790591786	18.29	0.16796	18.276	18.204	18.372	-0.01395	1131	43	0.94059354	0.025675297	0.93907416	381.08957	0	10.402557						241	8	4	NaN	NaN	NaN	0.025119	1	15671	15671		61.575	32.679	1	53037			30397	3044	17490	17981	24262	24262					0.07531444716960323
VYPERTPLL	9	Unmodified	_VYPERTPLL_					0	0	0		ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32782088-32784728:-|nuORF	ENSG00000241106|ENST00000438763|HLA-DOB	ENSG00000241106|ENST00000438763|HLA-DOB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.3109491686001	2	544.310949	1086.60735	1.4949	0.0008137	-0.94775	-0.00051587	0.54717	0.00029783	544.3106952609205	21.344	0.096117	21.33	21.306	21.402	-0.014006	1245	64	0.87076044	0.03866917	0.869241	353.19635	0	15.684937						119	5	3	NaN	NaN	NaN	0.60736	1	11942	11942		5.1889	1.6157	1	9883.9			30398	6069	17491	17982	24263	24263					0.06750602511442594
VYPERTPLL	9	Unmodified						0	0	0		ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32782088-32784728:-|nuORF	ENSG00000241106|ENST00000438763|HLA-DOB	ENSG00000241106|ENST00000438763|HLA-DOB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.310949	1086.60735	1.3206	0.00071884	-1.0122	-0.00055097	0.3084	0.00016787	544.3102535599779	21.32	0.14435	21.32	21.272	21.416	0	1245	52	0.87076044	0.031313777	0.87076044	353.19635		12.701416	-0.0050938	-2.8969E-05	0.00075972	NaN	5.1889	133	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11828			30399	6069	17491	17982							0.06750602511442594
VYPFDRLEI	9	Unmodified	_VYPFDRLEI_					0	0	0		VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant;nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1	VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.5413631419666	3	384.541363	1150.60226	1.4751	0.00056724	8.0656	0.0031015	9.5407	0.0036688	384.5441433595075	15.462	0.12011	15.462	15.438	15.558	0	1473	61	0.7302302	0.037126124	0.7302302	443.9779	0	22.572601						130	6	2	NaN	NaN	NaN	0.35794	1	14841	14841		13.949	0.8476	1	18926			30400	4163	17492	17983	24264	24264					0.03298298648792297
VYPFDRLEI	9	Unmodified						0	0	0		VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant;nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1	VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	VCAM1|p.D434Tfs*17|1|0.39|ENSG00000162692|chr1:100731286-100731286|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	384.541363	1150.60226	1.8248	0.00070172	10.062	0.0038694	11.887	0.0045712	384.54581681371513	15.628	0.19182	15.616	15.544	15.736	-0.012201	1473	43	0.7302302	0.025991142	0.7287108	443.97787		15.802521	0.076889	0.00069812	-0.00075972	NaN	13.949	169	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15839			30401	4163	17492	17983							0.03298298648792297
VYPFENFEF	9	Unmodified	_VYPFENFEF_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.2714896571	2	596.27149	1190.52843	0.60407	0.00036019	-0.89144	-0.00053154	-0.28737	-0.00017135	596.2707788983842	33.648	0.16883	33.648	33.552	33.721	0	1194	61	0.902037	0.036778092	0.902037	365.48254	0	14.90152						169	8	2	NaN	NaN	NaN	0.13602	1	16158	16158		30.61	16.185	1	47324			30402	7932	17493	17984	24265	24265					-0.05921669513531924
VYPFENFEF	9	Unmodified	_VYPFENFEF_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.2714896571	2	596.27149	1190.52843	0.27715	0.00016526	-1.4501	-0.00086464	-1.1729	-0.00069938	596.2707844867967	33.647	0.14478	33.645	33.573	33.718	-0.0018463	1191	73	0.90387505	0.04410982	0.9023556	366.22726	0	17.872192						315	7	5	NaN	NaN	NaN	0.10363	1	15544	15544		35.296	19.834	1	50507			30403	7932	17493	17984	24266	24266					-0.05921669513531924
VYPFENFEF	9	Unmodified						0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	596.27149	1190.52843	0.96682	0.00057649	-1.4072	-0.0008391	-0.44041	-0.00026261	596.2723495975417	33.816	0.07243	33.814	33.79	33.863	-0.0018463	1197	40	0.9001988	0.023894131	0.8986794	364.73776		9.681274	0.082926	-0.00053481	-0.0016788	NaN	30.61	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3885.6			30404	7932	17493	17984							-0.05921669513531924
VYPFPTFQPAF	11	Unmodified	_VYPFPTFQPAF_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.33188157595	2	657.331882	1312.64921	1.1467	0.00075376	-1.9328	-0.0012705	-0.78614	-0.00051675	657.3304895034604	34.131	0.28953	34.131	34.01	34.3	0	1134	79	0.9387595	0.047656953	0.9387595	379.9559	0	19.288788						552	13	5	NaN	NaN	NaN	7.9405E-05	1	18998	18998		87.778	48.739	1	159190			30405	2739	17494	17985	24267	24267					0.005391581999219852
VYPFPTFQPAF	11	Unmodified	_VYPFPTFQPAF_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.33188157595	2	657.331882	1312.64921	1.8139	0.0011923	-4.8503	-0.0031883	-3.0364	-0.0019959	657.830968992441	35.07	0.072384	35.07	35.046	35.119	-4.5776E-05	1134	28	0.9387595	0.016504645	0.93724006	379.9559	0	6.6801147						45	4	2	NaN	NaN	NaN	0.44296	1	18157	18157		20.513	9.9084	1	2681.7			30406	2739	17494	17985	24268	24268					0.005391581999219852
VYPFPTFQPAF	11	Unmodified	_VYPFPTFQPAF_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.33188157595	2	657.331882	1312.64921	1.1812	0.00077641	-2.0508	-0.0013481	-0.86967	-0.00057166	657.3304278498796	34.13	0.31366	34.129	34.032	34.346	-0.0012474	1131	82	0.94059354	0.04948193	0.93907416	380.6982	0	20.027405						654	14	5	NaN	NaN	NaN	0.0001589	1	18159	18159		84.233	54.197	1	175050			30407	2739	17494	17985	24269	24269					0.005391581999219852
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5502306998001	1	1012.55023	1011.54295	1.4955	0.0015143	-0.90261	-0.00091394	0.59288	0.00060032	1012.5488154838184	37.169	0.048256	37.169	37.145	37.193	0	153	49	1.5281296	0.028349876	1.5281296	310.21057	0	5.7550354						60	3	2	NaN	NaN	NaN	0.36886	1	9048	9048		15.013	0	1	3685.4			30408	3361	17495	17986	24270	24270					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5502306998001	1	1012.55023	1011.54295	1.9249	0.001949	-0.36753	-0.00037214	1.5573	0.0015769	1012.5499952728669	35.699	0.33747	35.699	35.627	35.964	0	153	169	1.5281296	0.09933007	1.5281296	310.21057	0	20.164032						1184	15	4	NaN	NaN	NaN	0.024982	1	9049	9049		65.676	0	1	625690			30409	3361	17495	17986	24271	24271					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5502306998001	1	1012.55023	1011.54295	1.6164	0.0016366	0.25353	0.00025671	1.8699	0.0018934	1012.549971905998	36.061	0.16891	36.061	36.012	36.181	0	165	82	1.5210435	0.047822714	1.5210435	308.7721	0	9.708008						284	8	2	NaN	NaN	NaN	0.36886	1	9051	9051		15.013	0	1	31409			30410	3361	17495	17986	24272	24272					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5502306998001	1	1012.55023	1011.54295	1.8145	0.0018373	-0.37189	-0.00037656	1.4426	0.0014608	1012.5497808481275	35.698	0.31328	35.698	35.626	35.939	0.00053024	153	166	1.5281296	0.09755111	1.5266101	310.21057	0	19.802917						1267	14	5	NaN	NaN	NaN	0.024982	1	8875	8875		65.676	0	1	632930			30411	3361	17495	17986	24273	24273					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5502306998001	1	1012.55023	1011.54295	1.5385	0.0015578	-0.033844	-3.4268E-05	1.5046	0.0015235	1012.5501839397887	36.782	0.14438	36.783	36.687	36.832	0.0016747	153	67	1.5281296	0.038977027	1.5266101	310.21057	0	7.912323						222	7	3	NaN	NaN	NaN	0.16059	1	8877	8877		27.861	0	1	22847			30412	3361	17495	17986	24274	24274					0.037644474252715554
VYPGLAVFF	9	Unmodified						0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1012.55023	1011.54295	1.5141	0.0015331	2.2161	0.0022439	3.7302	0.003777	1012.5533517418245	36.952	0.072208	36.952	36.928	37	0	156	76	1.5263584	0.04428029	1.5263584	309.85098		8.988892	0.08444	0.0013905	-0.00012589	NaN	27.861	141	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15766			30413	3361	17495	17986							0.037644474252715554
VYPGLAVFF	9	Unmodified						0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1012.55023	1011.54295	4.0593	0.0041102	-7.222	-0.0073127	-3.1628	-0.0032025	1012.5398136567126	37.142	0.024128	37.145	37.145	37.169	0.0022507	183	22	1.510409	0.012411714	1.5088896	306.6133		2.5195618	-0.012167	-0.0032357	-0.00962	NaN	15.013	16	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719.4			30414	3361	17495	17986							0.037644474252715554
VYPGYYLTF	9	Unmodified	_VYPGYYLTF_					0	0	0		ENST00000494760.1_1_2:9002596-9008596:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5506246302998	1	1122.55062	1121.54335	1.2989	0.001458	0.99415	0.001116	2.293	0.002574	1122.5513885213327	31.332	0.14481	31.332	31.308	31.452	0	60	79	1.582944	0.04591751	1.582944	320.9138	0	9.30896						315	7	3	NaN	NaN	NaN	0.023074	1	13739	13739		68.108	45.982	1	38666			30415	3449	17496	17987	24275	24275					-0.012561776455413565
VYPGYYLTF	9	Unmodified	_VYPGYYLTF_					0	0	0		ENST00000494760.1_1_2:9002596-9008596:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.5506246302998	1	1122.55062	1121.54335	0.93069	0.0010447	-0.65886	-0.0007396	0.27183	0.00030514	1122.549696927561	31.331	0.19302	31.326	31.302	31.495	-0.0050716	63	94	1.5811787	0.054756522	1.5796592	320.55588	0	11.100922						356	9	4	NaN	NaN	NaN	0.011118	1	13334	13334		89.521	63.406	1	40640			30416	3449	17496	17987	24276	24276					-0.012561776455413565
VYPLALYGF	9	Unmodified	_VYPLALYGF_					0	0	0		ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1	ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1042.5607953861	1	1042.5608	1041.55352	1.2622	0.0013159	4.2164	0.0043958	5.4785	0.0057117	1042.5655316694877	34.083	0.14481	34.083	34.035	34.179	0	120	124	1.5476005	0.0725044	1.5476005	314.04138	0	14.712677						440	7	3	NaN	NaN	NaN	0.033463	1	10284	10284		54.579	29.618	1	61743			30417	3412	17497	17988	24277	24277					0.03440430079695034
VYPLALYGF	9	Unmodified	_VYPLALYGF_					0	0	0		ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1	ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5607953861	1	1042.5608	1041.55352	1.1085	0.0011556	4.2897	0.0044722	5.3981	0.0056279	1042.5654204922375	34.082	0.16903	34.08	34.032	34.201	-0.0012474	117	112	1.5493695	0.06541693	1.54785	314.40036	0	13.274475						460	8	3	NaN	NaN	NaN	0.0029866	1	10079	10079		108.05	72.01	1	62473			30418	3412	17497	17988	24278	24278					0.03440430079695034
VYPLKFFFL	9	Unmodified	_VYPLKFFFL_					0	0	0		ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.3389783265501	2	587.338978	1172.6634	1.7054	0.0010016	-0.77341	-0.00045426	0.93194	0.00054737	587.3381054316336	34.638	0.12065	34.638	34.589	34.71	0	1158	43	0.92408	0.025705755	0.92408	374.47916	0	10.417145						101	6	2	NaN	NaN	NaN	0.61413	1	15584	15584		4.9097	0.94122	1	7458.3			30419	3248	17498	17989	24279	24279					0.08397855418888867
VYPLKFFFL	9	Unmodified						0	0	0		ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.338978	1172.6634	1.3664	0.00080255	-1.0851	-0.00063734	0.28129	0.00016521	587.338693927082	34.709	0.1446	34.708	34.636	34.78	-0.00064468	1155	43	0.92591566	0.02569741	0.9243962	375.22302		10.413757	0.035187	-0.00018335	0.0001581	NaN	4.9097	114	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7130.1			30420	3248	17498	17989							0.08397855418888867
VYPLLSRLYW	10	Unmodified	_VYPLLSRLYW_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3687983985001	2	655.368798	1308.72304	0.57783	0.00037869	-2.6956	-0.0017666	-2.1178	-0.0013879	655.8686467654325	31.066	0.16897	31.066	30.97	31.139	0	1059	31	0.98455137	0.018294036	0.98455137	398.50226	0	7.4046326						106	8	3	NaN	NaN	NaN	0.69669	1	18913	18913		8.2775	3.0887	1	5964			30421	554	17499	17990	24280	24280					0.08103126362266266
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3017355405	2	595.301736	1188.58892	2.5581	0.0015229	-1.0343	-0.00061574	1.5238	0.00090712	595.8026667116417	26.167	0.38616	26.167	25.95	26.336	0	1158	118	0.92408	0.07164377	0.92408	374.4208	0	29.028778						1711	17	5	NaN	NaN	NaN	0.024221	1	16118	16118		66.656	27.198	1	2190100			30422	1196	17500	17991	24281	24281					0.0021672454518011364
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.3017355405	2	595.301736	1188.58892	1.1601	0.00069063	6.7015	0.0039894	7.8616	0.0046801	595.3067128853359	27.446	0.09659	27.446	27.374	27.471	0	1167	82	0.91857195	0.04958874	0.91857195	372.189	0	20.092499						170	5	3	NaN	NaN	NaN	0.33202	1	16119	16119		16.858	2.8167	1	45361			30423	1196	17500	17991	24282	24282					0.0021672454518011364
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3017355405	2	595.301736	1188.58892	2.6516	0.0015785	-1.5628	-0.00093032	1.0888	0.00064818	595.300862101342	26.191	0.43436	26.18	25.938	26.373	-0.011137	1158	136	0.92408	0.08269268	0.9225606	374.4208	0	33.505585						2092	19	5	NaN	NaN	NaN	0.0073225	1	15505	15505		97.85	62.553	1	2686900			30424	1196	17500	17991	24283	24283					0.0021672454518011364
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(61)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.29919285155	2	603.299193	1204.58383	2.3283	0.0014046	-5.2494	-0.003167	-2.9211	-0.0017623	603.2954897471469	22.814	0.14473	22.814	22.742	22.887	0	1185	139	0.90755045	0.084507465	0.90755045	367.6673	0	34.235687						715	7	7	NaN	NaN	NaN	0.028569	1	16602	16602		60.984	28.531	1	1365400			30425	1196	17500	17992	24284	24284		130			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(64)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.29919285155	2	603.299193	1204.58383	1.9664	0.0011863	-4.9677	-0.002997	-3.0013	-0.0018107	603.2955331221189	22.838	0.1928	22.824	22.752	22.945	-0.01354	1185	127	0.90755045	0.07715064	0.906031	367.6673	0	31.25531						810	9	7	NaN	NaN	NaN	0.026469	1	15943	15943		63.731	11.106	1	1384300			30426	1196	17500	17992	24285	24285		130			-0.010275793174287173
VYPMTTMAY	9	Unmodified	_VYPMTTMAY_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.74319620635	2	538.743196	1075.47184	0.85753	0.00046199	-2.3725	-0.0012781	-1.5149	-0.00081616	538.7421095128976	32.634	0.12061	32.631	32.534	32.655	-0.0031052	1278	46	0.85049206	0.027656734	0.8489726	345.01984	0	11.219513						123	6	2	NaN	NaN	NaN	0.56671	1	11463	11463		6.8632	0.43328	1	11272			30427	1893	17501	17993	24286	24286					-0.06287756666051791
VYPMTTMAY	9	Unmodified						0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	538.743196	1075.47184	1.4355	0.00077337	-3.4963	-0.0018836	-2.0608	-0.0011102	538.7416753051745	32.611	0.12062	32.611	32.49	32.611	0	1281	55	0.84864825	0.03319341	0.84864825	344.27188		13.465607	-0.0099842	-0.00070414	-0.00016217	NaN	6.8632	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10129			30428	1893	17501	17993							-0.06287756666051791
VYPNRMIR	8	Unmodified	_VYPNRMIR_					0	0	0			REV__tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	REV__tr|U7ST79|U7ST79_FUSNUPenicillin-bindingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01252PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.789661008	2	524.789661	1047.56477	1.6956	0.00088982	3.9793	0.0020883	5.6749	0.0029781	524.7918827085886	15.534	0.26413	15.534	15.486	15.75	0	1266	55	0.85786515	0.033171892	0.85786515	348.1281	0	13.461395						463	12	5	NaN	NaN	NaN	0.50567	1	10541	10541		30.791	5.8301	1	140510	+		30429	13486	17502	17994	24287	24287					0.042889289022014054
VYPNSFFRY	9	Unmodified	_VYPNSFFRY_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.7929235909501	2	596.792924	1191.57129	1.2265	0.00073199	-9.1064	-0.0054346	-7.8798	-0.0047026	597.2896660125664	24.213	0.19311	24.213	24.116	24.309	0	1185	139	0.90755045	0.08445275	0.90755045	367.7128	0	34.217773						616	9	4	NaN	NaN	NaN	0.25548	1	16192	16192		21.771	6.3084	1	85619			30430	2066	17503	17995	24288	24288					-0.016828546654323873
VYPNWAIGL	9	Unmodified	_VYPNWAIGL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5512933322998	1	1032.55129	1031.54402	0.95574	0.00098685	-10.654	-0.011	-9.6979	-0.010014	1032.5390144062706	31.21	0.12069	31.205	31.181	31.302	-0.0050716	159	70	1.5245869	0.04074657	1.5230675	309.41074	0	8.269379						146	6	2	NaN	NaN	NaN	0.062072	1	9639	9639		41.785	13.996	1	24828			30431	2707	17504	17996	24289	24289					0.02950661794170628
VYPNWAIGL	9	Unmodified	_VYPNWAIGL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5512933322998	1	1032.55129	1031.54402	0.87095	0.0008993	-3.2179	-0.0033227	-2.347	-0.0024234	1032.546464436997	31.355	0.096502	31.35	31.302	31.398	-0.0050716	147	64	1.5316714	0.037187576	1.530152	310.84848	0	7.5470886						204	5	3	NaN	NaN	NaN	0.062072	1	9642	9642		41.785	13.996	1	45739			30432	2707	17504	17996	24290	24290					0.02950661794170628
VYPNWAIGL	9	Unmodified	_VYPNWAIGL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.77928489945	2	516.779285	1031.54402	0.80093	0.0004139	-0.48308	-0.00024964	0.31785	0.00016426	516.7790077142422	31.331	0.1689	31.326	31.277	31.446	-0.0050716	1266	37	0.85786515	0.022114575	0.8563457	348.19824	0	8.976074						152	8	3	NaN	NaN	NaN	0.55027	1	9643	9643		7.5404	2.8113	1	13182			30433	2707	17504	17996	24291	24291					0.02950661794170628
VYPNWAIGL	9	Unmodified						0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	516.779285	1031.54402	0.9501	0.00049099	-0.98501	-0.00050903	-0.034907	-1.8039E-05	517.2796434199568	31.356	0.12066	31.356	31.308	31.428	0	1269	37	0.8560222	0.022117019	0.8560222	347.4502		8.977051	0.015098	-0.0002929	-0.00016177	NaN	7.5404	82	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7801.7			30434	2707	17504	17996							0.02950661794170628
VYPPGIDLI	9	Unmodified	_VYPPGIDLI_					0	0	0		DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C	DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	986.5557100082002	1	986.55571	985.548434	1.346	0.0013279	-2.3642	-0.0023324	-1.0183	-0.0010046	986.5523333000824	31.018	0.096556	31.018	30.946	31.042	0	195	49	1.5033154	0.028376937	1.5033154	305.28152	0	5.7625732						87	5	2	NaN	NaN	NaN	0.55027	1	8075	8075		7.5404	0.67717	1	6236.5			30435	256	17505	17997	24292	24292					0.055081262171029266
VYPPGIDLI	9	Unmodified						0	0	0		DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C	DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	986.55571	985.548434	1.6366	0.0016146	-2.0399	-0.0020125	-0.40329	-0.00039787	986.5529530856595	31.017	0.096546	31.012	30.94	31.036	-0.0050716	192	46	1.5050892	0.026607633	1.5035697	305.64172		5.40329	-0.0030567	0.00013791	0.00012711	NaN	7.5404	103	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8234.4			30436	256	17505	17997							0.055081262171029266
VYPPPHQVFTW	11	Unmodified	_VYPPPHQVFTW_					0	0	0		ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF	ENSG00000076248|ENST00000242576|UNG	ENSG00000076248|ENST00000242576|UNG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	685.8482301319	2	685.84823	1369.68191	1.5796	0.0010834	-1.3417	-0.00092017	0.23796	0.0001632	685.8473228920841	24.984	0.19301	24.972	24.9	25.093	-0.012392	1041	40	0.9955231	0.023765624	0.99400365	402.75574	0	9.614807						203	9	3	NaN	NaN	NaN	0.19494	1	18869	18869		40.957	21.62	1	22228			30437	853	17506	17998	24293	24293					0.011853653227717587
VYPQPGMQRF	10	Unmodified	_VYPQPGMQRF_					0	0	0		BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant;ENSG00000151929|ENST00000369085|BAG3	BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant	BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.8055080374501	2	611.805508	1221.59646	1.0755	0.00065801	-3.5855	-0.0021936	-2.51	-0.0015356	611.8030590033135	19.25	0.14419	19.236	19.188	19.332	-0.014141	1179	55	0.9112251	0.03306806	0.90970564	369.09775	0	13.39447						148	7	3	NaN	NaN	NaN	0.76991	1	16328	16328		1.7022	0	1	12577			30438	59	17507	17999	24294	24294					-0.005471231345154592
VYPQPGMQRF	10	Unmodified						0	0	0		BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant;ENSG00000151929|ENST00000369085|BAG3	BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant	BAG3|p.R123Q|1|0.11|ENSG00000151929|chr10:119670038-119670038|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.805508	1221.59646	1.0849	0.00066378	-3.6429	-0.0022288	-2.558	-0.001565	612.3050622244874	19.228	0.12	19.228	19.156	19.276	0	1179	52	0.9112251	0.031235993	0.9112251	369.09775		12.652374	-0.0039228	-3.1104E-05	0.00075972	NaN	1.7022	114	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8953.4			30439	59	17507	17999							-0.005471231345154592
VYPSAFVLI	9	Unmodified	_VYPSAFVLI_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5764454503002	1	1008.57645	1007.56917	1.1172	0.0011268	1.0602	0.0010693	2.1774	0.002196	1008.5771292335149	34.059	0.072472	34.059	34.035	34.107	0	159	73	1.5245869	0.042520404	1.5245869	309.5078	0	8.63208						183	4	3	NaN	NaN	NaN	0.12945	1	8902	8902		31.561	1.9627	1	26927			30440	2354	17508	18000	24295	24295					0.06568716596768809
VYPSAFVLI	9	Unmodified	_VYPSAFVLI_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5764454503002	1	1008.57645	1007.56917	1.1636	0.0011735	0.2752	0.00027756	1.4388	0.0014511	1008.5758228430092	34.058	0.072456	34.056	34.032	34.105	-0.0012474	153	70	1.5281296	0.04074216	1.5266101	310.22702	0	8.271118						169	4	3	NaN	NaN	NaN	0.12945	1	8732	8732		31.561	0	1	26064			30441	2354	17508	18000	24296	24296					0.06568716596768809
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.28440006709997	2	497.2844	992.554247	1.7478	0.00086918	-1.0225	-0.00050848	0.72534	0.0003607	497.28411052019726	19.42	0.16797	19.42	19.372	19.54	0	1311	46	0.83019954	0.027689636	0.83019954	337.1433	0	11.24472						182	8	3	NaN	NaN	NaN	0.12866	1	8327	8327		31.675	16.663	1	30497			30442	1811	17509	18001	24297	24297					0.05767224728754172
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.28440006709997	2	497.2844	992.554247	1.1742	0.00058389	-2.2376	-0.0011127	-1.0634	-0.00052883	497.28283545074737	19.442	0.14434	19.428	19.38	19.524	-0.014141	1314	46	0.8283535	0.027689636	0.8268341	336.39368	0	11.24472						189	7	3	NaN	NaN	NaN	0.31471	1	8158	8158		17.97	1.553	1	32083			30443	1811	17509	18001	24298	24298					0.05767224728754172
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8502415046	2	607.850242	1213.68593	0.95152	0.00057838	-0.018226	-1.1079E-05	0.93329	0.0005673	607.8496852667126	20.549	0.12029	20.549	20.501	20.622	0	1122	31	0.9460945	0.018333495	0.9460945	383.24973	0	7.4266357						97	6	3	NaN	NaN	NaN	0.31737	1	16828	16828		17.799	8.837	1	7123.5			30444	5072	17510	18002	24299	24299					0.08763454816494232
VYQDYHTVW	9	Unmodified	_VYQDYHTVW_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8;ENST00000509220.1_1_4:47462124-47465668:-|nuORF	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.78001318095	2	605.780013	1209.54547	0.79476	0.00048145	-0.71969	-0.00043597	0.075069	4.5475E-05	605.780092554019	21.176	0.16856	21.162	21.138	21.306	-0.014004	1167	58	0.91857195	0.034895778	0.9170525	372.11505	0	14.136353						180	8	3	NaN	NaN	NaN	0.44082	1	16037	16037		12.049	0	1	18258			30445	4650	17511	18003	24300	24300					-0.050917489077164646
VYQDYNGTYY	10	Unmodified	_VYQDYNGTYY_					0	0	0			REV__ENSG00000033050|ENST00000287844|ABCF2	REV__ENSG00000033050|ENST00000287844|ABCF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.2722179386001	2	643.272218	1284.52988	2.5757	0.0016568	-8.9101	-0.0057316	-6.3344	-0.0040748	643.2672329722335	25.926	0.19305	25.926	25.877	26.07	0	1131	79	0.94059354	0.04769808	0.94059354	380.78503	0	19.309814						557	9	5	NaN	NaN	NaN	0.72369	1	18502	18502		6.4299	0	1	143320	+		30446	8444	17512	18004	24301	24301					-0.10100080215420348
VYQHGLTGF	9	Unmodified	_VYQHGLTGF_					0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.25871663285005	2	511.258717	1020.50288	1.3563	0.00069343	-1.1792	-0.00060289	0.1771	9.0543E-05	511.2583822495392	19.25	0.09613	19.236	19.212	19.308	-0.014141	1287	58	0.8449601	0.03505075	0.84344065	343.0091	0	14.22876						95	5	2	NaN	NaN	NaN	0.2345	1	9193	9193		23.118	1.2826	1	11693			30447	491	17513	18005	24302	24302					-0.006550992452844184
VYQHGLTGF	9	Unmodified						0	0	0		ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	ENSG00000030110|ENST00000374467|BAK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.258717	1020.50288	1.8344	0.00093784	0.2537	0.0001297	2.0881	0.0010675	511.2589459911638	19.228	0.096024	19.228	19.18	19.276	0	1287	43	0.8449601	0.025819898	0.8449601	343.0091		10.481506	-0.0039228	0.00076124	0.00075972	NaN	23.118	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13655			30448	491	17513	18005							-0.006550992452844184
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.88898576453334	3	392.888986	1175.64513	1.5547	0.00061082	-1.8388	-0.00072244	-0.28411	-0.00011163	392.8883527671052	19.54	0.19204	19.54	19.492	19.684	0	1410	43	0.76917666	0.025934815	0.76917666	467.53952	0	15.764282						225	9	4	NaN	NaN	NaN	0.017076	1	15677	15677		58.769	35.684	1	53786			30449	7290	17514	18006	24303	24303					0.0643311349688247
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8298404135	2	588.82984	1175.64513	1.8056	0.0010632	-1.3398	-0.00078889	0.46581	0.00027428	588.8293424698018	19.54	0.16805	19.54	19.492	19.66	0	1149	40	0.92958635	0.023855448	0.92958635	376.69946	0	9.667023						209	8	4	NaN	NaN	NaN	0.12104	1	15678	15678		32.778	12.265	1	34653			30450	7290	17514	18006	24304	24304					0.0643311349688247
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;ENSG00000242802|ENST00000649063|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	nc|ENSG00000242802|O43299-2|AP5Z1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.88898576453334	3	392.888986	1175.64513	1.4546	0.00057152	-0.97683	-0.00038378	0.47782	0.00018773	392.88849516899944	19.779	0.28875	19.765	19.669	19.958	-0.014141	1410	40	0.76917666	0.024080992	0.7676573	467.53952	0	14.637482						219	13	2	NaN	NaN	NaN	0.070055	1	15108	15108		35.523	14.835	1	47859			30451	7290	17514	18006	24305	24305					0.0643311349688247
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENST00000475908.5_1_5:56205193-56212726:+|nuORF;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.8107819931	2	593.810782	1185.60701	0.75341	0.00044738	0.61304	0.00036403	1.3664	0.00081141	593.8107112146173	28.025	0.14479	28.016	27.943	28.088	-0.0089779	1188	82	0.90571284	0.04958874	0.9041934	366.98935	0	20.093079						275	7	2	NaN	NaN	NaN	0.12328	1	15422	15422		32.453	0.77731	1	54378			30452	3879	17515	18007	24306	24306					0.02163182791559848
VYQKYEPIF	9	Unmodified						0	0	0		ENST00000475908.5_1_5:56205193-56212726:+|nuORF;nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.810782	1185.60701	1.5398	0.00091437	-0.014511	-8.6168E-06	1.5253	0.00090575	593.809700911284	28.001	0.1689	28.001	27.905	28.074	0	1188	85	0.90571284	0.05142814	0.90571284	366.98935		20.838379	-0.0072032	-0.00041086	0.00075972	NaN	32.453	404	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55467			30453	3879	17515	18007							0.02163182791559848
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.34004095905	2	607.340041	1212.66553	1.3935	0.00084634	-2.8376	-0.0017234	-1.444	-0.00087702	607.3384614262261	30.294	0.3379	30.294	30.053	30.391	0	1140	58	0.93509084	0.034850597	0.93509084	378.79587	0	14.117645						249	15	3	NaN	NaN	NaN	0.074859	1	16802	16802		39.459	18.506	1	42833			30454	733	17516	18008	24307	24307					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.34004095905	2	607.340041	1212.66553	1.6384	0.00099507	-1.294	-0.00078588	0.34444	0.00020919	607.3391237435494	29.522	0.24139	29.522	29.474	29.715	0	1140	82	0.93509084	0.049545944	0.93509084	378.79587	0	20.070587						699	11	6	NaN	NaN	NaN	8.7755E-05	1	16804	16804		123.66	57.176	1	612940			30455	733	17516	18008	24308	24308					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.34004095905	2	607.340041	1212.66553	0.57709	0.00035049	-8.1666	-0.0049599	-7.5895	-0.0046094	607.8337474322683	30.197	0.14481	30.19	30.118	30.263	-0.0064106	1131	46	0.94059354	0.027510703	0.93907416	381.025	0	11.144287						112	7	3	NaN	NaN	NaN	0.021105	1	16129	16129		70.6	42.104	1	18333			30456	733	17516	18008	24309	24309					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.34004095905	2	607.340041	1212.66553	1.3268	0.00080579	-0.28865	-0.00017531	1.0381	0.00063049	607.3398595485379	29.545	0.26541	29.538	29.466	29.731	-0.0070648	1140	70	0.93509084	0.04219216	0.9335714	378.79587	0	17.091614						704	12	6	NaN	NaN	NaN	0.016254	1	16131	16131		76.739	30.913	1	599800			30457	733	17516	18008	24310	24310					0.06770284156687012
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.86484021066667	3	379.86484	1136.57269	0.88466	0.00033605	-1.088	-0.00041329	-0.20333	-7.7237E-05	379.8643426547657	12.7	0.096105	12.7	12.676	12.772	0	1476	37	0.72837335	0.022282898	0.72837335	442.91364	0	13.549957						142	5	4	NaN	NaN	NaN	0.16939	1	14342	14342		27.296	13.347	1	20422			30458	1279	17517	18009	24311	24311					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.2936220827	2	569.293622	1136.57269	1.105	0.00062907	-0.051777	-2.9477E-05	1.0532	0.00059959	569.2934973205408	12.7	0.19219	12.7	12.676	12.868	0	1194	58	0.902037	0.034937263	0.902037	365.68124	0	14.163391						209	9	3	NaN	NaN	NaN	0.012861	1	14343	14343		98.041	58.582	1	23504			30459	1279	17517	18009	24312	24312					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	379.86484021066667	3	379.86484	1136.57269	1.15	0.00043683	-1.2332	-0.00046846	-0.083282	-3.1636E-05	379.86472428957893	12.798	0.19197	12.789	12.717	12.909	-0.00947	1476	37	0.72837335	0.022282898	0.7268539	442.91364	0	13.549957						207	9	3	NaN	NaN	NaN	0.29341	1	13871	13871		19.336	9.1327	1	27566			30460	1279	17517	18009	24313	24313					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.2936220827	2	569.293622	1136.57269	0.86277	0.00049117	-0.068746	-3.9137E-05	0.79402	0.00045203	569.2938122804703	12.774	0.21601	12.765	12.693	12.909	-0.00947	1191	37	0.90387505	0.022057295	0.9023556	366.42636	0	8.941925						185	10	3	NaN	NaN	NaN	0.03533	1	13873	13873		61.271	40.716	1	22878			30461	1279	17517	18009	24314	24314					0.009867794233286986
VYQNIFTAM	9	Unmodified	_VYQNIFTAM_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;GNAQ|p.A110Efs*10|1|0.17|ENSG00000156052|chr9:77815763-77815764|-/GAGGTTT|frameshift_variant;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.7680598986501	2	543.76806	1085.52157	1.1679	0.00063507	-0.4303	-0.00023398	0.73761	0.00040109	543.7689431441639	28.966	0.12066	28.958	28.91	29.031	-0.0077229	1245	52	0.87076044	0.031306982	0.869241	353.20078	0	12.698822						110	6	2	NaN	NaN	NaN	0.062072	1	11886	11886		41.785	27.743	1	14823			30462	1015	17518	18010	24315	24315					-0.01777305665723361
VYQPEASMNFT	11	Unmodified	_VYQPEASMNFT_					0	0	0		nc|ENSG00000104415|O95388-3|CCN4;nc|ENSG00000104415|O95388-5|CCN4;nc|ENSG00000104415|O95388-2|CCN4;ENSG00000104415|ENST00000250160|CCN4	nc|ENSG00000104415|O95388-3|CCN4	nc|ENSG00000104415|O95388-3|CCN4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.7897205875	2	643.789721	1285.56489	2.6798	0.0017252	-10.093	-0.006498	-7.4137	-0.0047728	643.7832862927661	25.515	0.072395	25.503	25.455	25.528	-0.0116	1137	49	0.9369253	0.029352665	0.93540585	379.29675	0	11.882874						96	4	3	NaN	NaN	NaN	0.75376	1	17695	17695		3.9281	0.35833	1	7602.8			30463	1473	17519	18011	24316	24316					-0.06647160679131048
VYQSKPATL	9	Unmodified	_VYQSKPATL_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.78202455365005	2	503.782025	1005.5495	1.0759	0.00054204	-1.2374	-0.0006234	-0.16148	-8.1353E-05	503.7811500313693	14.644	0.16767	14.633	14.561	14.728	-0.011219	1290	37	0.84311575	0.022136092	0.8415963	342.3281	0	8.9878845						135	8	3	NaN	NaN	NaN	0.042816	1	8644	8644		49.961	13.925	1	12055			30464	3306	17520	18012	24317	24317					0.04694340586001999
VYQSKPATL	9	Unmodified						0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	503.782025	1005.5495	1.3159	0.00066292	-1.8167	-0.00091522	-0.50082	-0.00025231	503.78112833596293	14.597	0.096068	14.597	14.573	14.669	0	1293	31	0.84127116	0.018446803	0.84127116	341.57913		7.4898987	-0.017748	-0.00030475	-0.00016257	NaN	49.961	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11509			30465	3306	17520	18012							0.04694340586001999
VYQSLANLIRW	11	Unmodified	_VYQSLANLIRW_					0	0	0		ENST00000481260.1_1_9:134504569-134518759:-|nuORF;RAPGEF1|p.K269Sfs*38|1|0.3|ENSG00000107263|chr9:131629140-131629140|G/-|frameshift_variant;nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.88006157655	2	681.880062	1361.74557	1.7715	0.001208	-1.5031	-0.0010249	0.26844	0.00018304	681.8792974522984	30.198	0.096533	30.198	30.173	30.27	0	1083	37	0.9699114	0.021967113	0.9699114	392.41693	0	8.887665						107	5	3	NaN	NaN	NaN	0.065807	1	19707	19707		45.827	30.005	1	11626			30466	1629	17521	18013	24318	24318					0.07916725759878318
VYQSLANLIRW	11	Unmodified	_VYQSLANLIRW_					0	0	0		ENST00000481260.1_1_9:134504569-134518759:-|nuORF;RAPGEF1|p.K269Sfs*38|1|0.3|ENSG00000107263|chr9:131629140-131629140|G/-|frameshift_variant;nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	ENST00000481260.1_1_9:134504569-134518759:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.88006157655	2	681.880062	1361.74557	1.1425	0.00077902	-4.3482	-0.002965	-3.2057	-0.0021859	682.3776346577985	30.221	0.12063	30.214	30.19	30.311	-0.0064106	1080	37	0.9717421	0.02196467	0.97022265	393.15762	0	8.886719						111	6	3	NaN	NaN	NaN	0.05951	1	18796	18796		47.424	32.249	1	10597			30467	1629	17521	18013	24319	24319					0.07916725759878318
VYQVLIQFL	9	Unmodified	_VYQVLIQFL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.8315174352001	2	561.831517	1121.64848	1.1757	0.00066057	-3.9866	-0.0022398	-2.8109	-0.0015792	561.8298949979021	35.723	0.1206	35.723	35.699	35.82	0	1179	40	0.9112251	0.023881197	0.9112251	369.46497	0	9.682861						124	6	3	NaN	NaN	NaN	0.29681	1	13767	13767		19.118	3.6556	1	14733			30468	3764	17522	18014	24320	24320					0.09252363550899645
VYQVLIQFL	9	Unmodified	_VYQVLIQFL_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.8315174352001	2	561.831517	1121.64848	0.89163	0.00050095	-0.94889	-0.00053312	-0.05726	-3.217E-05	561.8310534758014	35.746	0.1205	35.746	35.698	35.819	0.00053024	1176	40	0.9130621	0.02388376	0.91154265	370.20978	0	9.683899						121	6	3	NaN	NaN	NaN	0.20577	1	13357	13357		24.961	7.1807	1	12503			30469	3764	17522	18014	24321	24321					0.09252363550899645
VYRHTFWQF	9	Unmodified	_VYRHTFWQF_					0	0	0		nc|ENSG00000173950|Q8NBI6-2|XXYLT1;ENSG00000173950|ENST00000310380|XXYLT1	nc|ENSG00000173950|Q8NBI6-2|XXYLT1	nc|ENSG00000173950|Q8NBI6-2|XXYLT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	428.5488520674999	3	428.548852	1282.62473	1.4155	0.00060663	-0.58086	-0.00024893	0.83468	0.0003577	428.54871184058607	23.151	0.14473	23.138	23.09	23.234	-0.013294	1482	40	0.72465914	0.024143755	0.7231397	440.05414	0	14.6614685						137	7	3	NaN	NaN	NaN	0.33202	1	17648	17648		11.561	0	1	10756			30470	4921	17523	18015	24322	24322					-0.005280571629327824
VYRKQPFL	8	Unmodified	_VYRKQPFL_					0	0	0			REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF	REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.8083766899001	2	525.808377	1049.6022	1.2772	0.00067156	-7.2759	-0.0038257	-5.9987	-0.0031542	525.8058487714719	24.719	0.072392	24.719	24.719	24.791	0	1218	73	0.8873258	0.044190943	0.8873258	360.07443	0	17.932587						99	4	3	NaN	NaN	NaN	0.80071	1	10634	10634		9.1232	0.83292	1	7327.7	+		30471	12543	17524	18016	24323	24323					0.07938343439468554
VYRNKDALSHF	11	Unmodified	_VYRNKDALSHF_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	450.5702043407666	3	450.570204	1348.68878	1.1462	0.00051646	-0.83802	-0.00037759	0.3082	0.00013887	450.5696272938356	14.237	0.12013	14.237	14.189	14.309	0	1380	52	0.7876915	0.031466663	0.7876915	478.0816	0	19.098389						116	6	3	NaN	NaN	NaN	0.21983	1	19529	19529		17.112	0	1	9412.1			30472	1934	17525	18017	24324	24324					0.02838678203352174
VYRQDCETF	9	Unmodified	_VYRQDCETF_					0	0	0		nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	nc|ENSG00000134283|Q8NEY8-9|PPHLN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7556808049	2	580.755681	1159.49681	1.9445	0.0011293	-0.14212	-8.2538E-05	1.8023	0.0010467	580.7559578108406	16.662	0.096016	16.662	16.638	16.734	0	1230	46	0.8799654	0.027602911	0.8799654	356.649	0	11.187408						86	5	2	NaN	NaN	NaN	0.3106	1	15109	15109		18.233	8.4875	1	9187.1			30473	2859	17526	18018	24325	24325					-0.07655985539145149
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.30566682545	2	559.305667	1116.59678	1.8894	0.0010567	-1.1639	-0.00065098	0.72547	0.00040576	559.3051127351888	23.586	0.16862	23.586	23.538	23.706	0	1206	85	0.894683	0.05152273	0.894683	362.7777	0	20.89151						295	8	3	NaN	NaN	NaN	0.12328	1	13545	13545		32.453	19.45	1	76917			30474	5689	17527	18019	24326	24326					0.04314619856972968
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.30566682545	2	559.305667	1116.59678	1.8586	0.0010395	-1.6262	-0.00090957	0.23237	0.00012997	559.3049594818827	23.609	0.21692	23.596	23.524	23.741	-0.013048	1203	106	0.8965218	0.06442076	0.89500237	363.52332	0	26.12146						355	10	4	NaN	NaN	NaN	0.042816	1	13149	13149		49.961	26.627	1	77147			30475	5689	17527	18019	24327	24327					0.04314619856972968
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.3109491686	2	574.310949	1146.60735	2.048	0.0011762	-2.9626	-0.0017015	-0.91465	-0.00052529	574.3092857063156	23.2	0.14463	23.2	23.152	23.296	0	1194	52	0.902037	0.03125292	0.902037	365.64288	0	12.668457						166	7	2	NaN	NaN	NaN	0.041983	1	14689	14689		50.315	32.345	1	39343			30476	5749	17528	18020	24328	24328					0.03990602511407815
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.3109491686	2	574.310949	1146.60735	1.503	0.0008632	-2.022	-0.0011612	-0.51895	-0.00029804	574.3100117025386	23.248	0.12062	23.234	23.186	23.307	-0.013294	1194	55	0.902037	0.03308952	0.9005176	365.64288	0	13.412933						158	6	2	NaN	NaN	NaN	0.31471	1	14206	14206		17.97	1.1114	1	34107			30477	5749	17528	18020	24329	24329					0.03990602511407815
VYRVYVTTF	9	Unmodified						0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.310949	1146.60735	2.0099	0.0011543	-5.3191	-0.0030548	-3.3092	-0.0019005	574.8088355183492	22.91	0.096512	22.896	22.848	22.945	-0.01354	1158	34	0.92408	0.020196259	0.9225606	374.5781		8.186615	-0.15167	-0.0021855	0.010262	NaN	50.315	51	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3153.6			30478	5749	17528	18020							0.03990602511407815
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1141.6139531686	1	1141.61395	1140.60668	1.7995	0.0020543	-0.71969	-0.0008216	1.0798	0.0012327	1141.6144870504688	33.6	0.12059	33.6	33.576	33.697	0	63	82	1.5811787	0.0476861	1.5811787	320.49072	0	9.665527						235	6	3	NaN	NaN	NaN	0.070973	1	14477	14477		49.961	9.0044	1	29993			30479	1578	17529	18021	24330	24330					0.041997630717105494
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1141.6139531686	1	1141.61395	1140.60668	1.0193	0.0011636	-0.77057	-0.00087969	0.24868	0.0002839	1141.6133460266271	33.623	0.12064	33.621	33.573	33.694	-0.0018501	60	70	1.582944	0.040617228	1.5814246	320.84854	0	8.232758						212	6	3	NaN	NaN	NaN	0.0021892	1	14011	14011		85.344	32.204	1	22920			30480	1578	17529	18021	24331	24331					0.041997630717105494
VYSAGVYRL	9	Unmodified	_VYSAGVYRL_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.28219172915	2	514.282192	1026.54983	2.1203	0.0010905	-6.6414	-0.0034156	-4.5211	-0.0023251	514.2775523444977	20.069	0.19221	20.069	19.997	20.189	0	1275	88	0.85233563	0.0534696	0.85233563	345.97607	0	21.704132						352	9	4	NaN	NaN	NaN	0.10363	1	9633	9633		35.296	13.17	1	60201			30481	5018	17530	18022	24332	24332					0.037617603058379245
VYSAGVYRL	9	Unmodified	_VYSAGVYRL_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.28219172915	2	514.282192	1026.54983	1.3555	0.00069712	-3.5654	-0.0018336	-2.2099	-0.0011365	514.2795842772482	20.092	0.19258	20.078	20.03	20.222	-0.014141	1275	82	0.85233563	0.049782038	0.8508162	345.97604	0	20.207306						277	9	4	NaN	NaN	NaN	0.12328	1	9444	9444		32.453	8.6023	1	54045			30482	5018	17530	18022	24333	24333					0.037617603058379245
VYSEKPSM	8	Unmodified	_VYSEKPSM_					0	0	0			REV__ENST00000373755.6_1_9:124966414-124966600:-|nuORF	REV__ENST00000373755.6_1_9:124966414-124966600:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.72586073295	2	470.725861	939.437169	1.5892	0.00074809	-1.319	-0.0006209	0.2702	0.00012719	470.7254590465322	25.491	0.12064	25.491	25.419	25.539	0	1347	34	0.8080346	0.020329893	0.8080346	328.39566	0	8.262329						78	6	3	NaN	NaN	NaN	0.84455	1	6802	6802		2.7852	0	1	6251.2	+		30483	11924	17531	18023	24334	24334					-0.034972564824897745
VYSEKVMHMF	10	Unmodified	_VYSEKVMHMF_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.2034766572	3	424.203477	1269.5886	1.2394	0.00052574	0.7076	0.00030017	1.947	0.0008259	424.20490584736115	20.67	0.072302	20.67	20.646	20.718	0	1431	37	0.75620437	0.022246659	0.75620437	459.2603	0	13.510925						56	4	2	NaN	NaN	NaN	0.70677	1	18225	18225		3.9087	1.1196	1	4389.9			30484	5636	17532	18024	24335	24335					-0.03541018446298949
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1177.5411821559999	1	1177.54118	1176.53391	3.0911	0.0036399	0.50798	0.00059817	3.5991	0.0042381	1177.5422155457984	26.263	0.1448	26.263	26.239	26.384	0	60	76	1.582944	0.04415381	1.582944	320.7313	0	8.946289						192	7	2	NaN	NaN	NaN	0.00025126	1	15691	15691		99.986	60.527	1	20942			30485	5430	17533	18025	24336	24336					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1177.5411821559999	1	1177.54118	1176.53391	2.2975	0.0027054	-0.72413	-0.00085269	1.5734	0.0018527	1177.540322617041	26.263	0.12062	26.252	26.252	26.373	-0.011137	57	76	1.5847093	0.04414451	1.5831898	321.08896	0	8.944397						225	6	3	NaN	NaN	NaN	0.00909	1	15120	15120		72.428	35.126	1	32042			30486	5430	17533	18025	24337	24337					-0.04729990721716604
VYSFGFERL	9	Unmodified	_VYSFGFERL_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2874740723001	2	559.287474	1116.5604	2.4115	0.0013487	0.19211	0.00010745	2.6036	0.0014562	559.2873471383563	25.757	0.33779	25.757	25.684	26.022	0	1203	64	0.8965218	0.038623214	0.8965218	363.52347	0	15.661041						477	15	6	NaN	NaN	NaN	0.013696	1	13535	13535		81.699	37.061	1	331840			30487	3782	17534	18026	24338	24338					0.006777429603062046
VYSFGFERL	9	Unmodified	_VYSFGFERL_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.2874740723001	2	559.287474	1116.5604	2.4868	0.0013908	-0.36635	-0.00020489	2.1204	0.0011859	559.287550634719	25.78	0.28961	25.769	25.721	26.01	-0.0116	1200	64	0.89836043	0.03861904	0.896841	364.26898	0	15.659332						499	13	5	NaN	NaN	NaN	0.0073225	1	13141	13141		97.85	45.226	1	317510			30488	3782	17534	18026	24339	24339					0.006777429603062046
VYSFPLVL	8	Unmodified	_VYSFPLVL_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	937.5393316625001	1	937.539332	936.532055	0.79251	0.00074301	1.054	0.00098818	1.8465	0.0017312	937.539451920029	35.023	0.072395	35.023	34.999	35.072	0	213	94	1.4926696	0.05508256	1.4926696	303.33835	0	11.193787						138	4	2	NaN	NaN	NaN	0.72043	1	6759	6759		17.78	2.7674	1	9997.4	+		30489	8535	17535	18027	24340	24340					0.061250450509987786
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5349745661	1	1060.53497	1059.5277	2.3161	0.0024563	-1.3668	-0.0014495	0.94937	0.0010068	1060.5331066741858	30.101	0.19311	30.101	30.053	30.246	0	141	97	1.5352125	0.05666375	1.5352125	311.45856	0	11.495728						382	9	3	NaN	NaN	NaN	0.00050979	1	11064	11064		115.51	47.401	1	79357			30490	2677	17536	18028	24341	24341					0.00031535837410956447
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.5349745661	1	1060.53497	1059.5277	1.3267	0.001407	-1.0546	-0.0011184	0.27209	0.00028856	1060.5336544914674	30.1	0.33785	30.094	29.949	30.287	-0.0064106	141	118	1.5352125	0.06907725	1.5336931	311.45856	0	14.01413						510	15	3	NaN	NaN	NaN	0.0072287	1	10829	10829		98.041	42.094	1	87947			30491	2677	17536	18028	24342	24342					0.00031535837410956447
VYSGGVYLF	9	Unmodified	_VYSGGVYLF_					0	0	0		ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.5087598156001	1	1004.50876	1003.50148	2.3027	0.002313	0.95842	0.00096275	3.2611	0.0032758	1004.5083726750545	29.884	0.3379	29.884	29.811	30.149	0	189	145	1.5068626	0.08522141	1.5068626	305.92633	0	17.301819						998	15	4	NaN	NaN	NaN	0.02781	1	8726	8726		61.977	24.674	1	276800			30492	669	17537	18029	24343	24343					-0.00012733334040149202
VYSGGVYLF	9	Unmodified	_VYSGGVYLF_					0	0	0		ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.5087598156001	1	1004.50876	1003.50148	1.6847	0.0016923	1.2357	0.0012413	2.9205	0.0029336	1004.5087473865195	29.883	0.28955	29.876	29.803	30.093	-0.0070667	189	187	1.5068626	0.11015952	1.5053432	305.92633	0	22.364807						975	13	4	NaN	NaN	NaN	0.014943	1	8553	8553		78.398	33.759	1	276930			30493	669	17537	18029	24344	24344					-0.00012733334040149202
VYSHLPDLL	9	Unmodified	_VYSHLPDLL_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7898495857501	2	528.78985	1055.56515	2.0239	0.0010702	-7.8057	-0.0041276	-5.7818	-0.0030573	528.7871841468456	25.612	0.14474	25.612	25.564	25.708	0	1227	88	0.88180584	0.05341184	0.88180584	357.80826	0	21.67279						234	7	3	NaN	NaN	NaN	0.062072	1	10903	10903		41.785	16.823	1	25856			30494	3547	17538	18030	24345	24345					0.03958627103043
VYSHLPDLL	9	Unmodified	_VYSHLPDLL_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.7898495857501	2	528.78985	1055.56515	1.6123	0.00085256	-5.9046	-0.0031223	-4.2923	-0.0022697	528.7877584514284	25.636	0.14471	25.624	25.576	25.721	-0.0116	1227	88	0.88180584	0.053417623	0.8802864	357.80826	0	21.67511						183	7	3	NaN	NaN	NaN	0.31737	1	10681	10681		17.799	6.2505	1	20866			30495	3547	17538	18030	24346	24346					0.03958627103043
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8189413762001	2	543.818941	1085.62333	1.6195	0.00088074	-1.352	-0.00073525	0.26752	0.00014548	543.8180501542867	16.038	0.14394	16.038	16.014	16.158	0	1218	43	0.8873258	0.025755763	0.8873258	359.91965	0	10.447113						162	7	4	NaN	NaN	NaN	0.006197	1	12215	12215		100.15	54.981	1	25966			30496	2917	17539	18031	24347	24347					0.08394308748324875
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.3000501313	2	511.30005	1020.58555	1.2677	0.00064817	-3.1648	-0.0016182	-1.8971	-0.00096999	511.2982901231518	31.163	0.28958	31.163	30.994	31.284	0	1269	64	0.8560222	0.038694263	0.8560222	347.49936	0	15.707825						394	13	4	NaN	NaN	NaN	0.078597	1	9405	9405		38.918	5.2196	1	88438			30497	2976	17540	18032	24348	24348					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	2.0132	0.0020567	-3.0427	-0.0031084	-1.0295	-0.0010517	1021.5902354280511	32.225	0.072403	32.225	32.152	32.225	0	138	52	1.5369828	0.030091405	1.5369828	311.9706	0	6.1078186						99	4	2	NaN	NaN	NaN	0.17818	1	9406	9406		26.732	10.315	1	9921.7			30498	2976	17540	18032	24349	24349					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	1.664	0.0016999	-0.46187	-0.00047185	1.2021	0.0012281	1022.5949359470153	31.573	0.096575	31.573	31.525	31.621	0	135	58	1.5387528	0.033631682	1.5387528	312.32986	0	6.826416						127	5	3	NaN	NaN	NaN	0.29681	1	9410	9410		19.118	8.5134	1	13320			30499	2976	17540	18032	24350	24350					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	1.9502	0.0019923	-0.56727	-0.00057952	1.3829	0.0014128	1021.5923846256017	31.959	0.21723	31.959	31.815	32.032	0	135	49	1.5387528	0.028316855	1.5387528	312.3299	0	5.74765						229	10	3	NaN	NaN	NaN	0.45297	1	9411	9411		11.548	0.94349	1	24340			30500	2976	17540	18032	24351	24351					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	2.2844	0.0023337	-0.25	-0.0002554	2.0344	0.0020783	1021.5924470581828	31.163	0.28958	31.163	30.994	31.284	0	126	229	1.544062	0.13477671	1.544062	313.4075	0	27.356445						993	13	3	NaN	NaN	NaN	0.015029	1	9412	9412		78.289	20.09	1	863630			30501	2976	17540	18032	24352	24352					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	1.6507	0.0016864	1.0943	0.0011179	2.745	0.0028043	1021.5946320627095	31.163	0.024117	31.163	31.139	31.163	0	693	148	1.2062578	0.08831823	1.2062578	244.84135	0	17.926483						154	2	2	NaN	NaN	NaN	0.059222	1	9413	9413		42.995	2.0379	1	12441			30502	2976	17540	18032	24353	24353					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.3000501313	2	511.30005	1020.58555	1.0778	0.00055105	-2.7644	-0.0014135	-1.6867	-0.0008624	511.2986343728802	31.138	0.28962	31.133	30.988	31.277	-0.0050716	1266	64	0.85786515	0.038694263	0.8563457	348.2475	0	15.707825						440	13	4	NaN	NaN	NaN	0.043119	1	9217	9217		49.833	13.246	1	126820			30503	2976	17540	18032	24354	24354					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.5928237960001	1	1021.59282	1020.58555	2.1888	0.0022361	-0.2638	-0.0002695	1.925	0.0019666	1021.5922692154334	31.138	0.62746	31.133	30.964	31.591	-0.0050716	123	229	1.5458313	0.13477671	1.5443119	313.76663	0	27.356445						1032	27	2	NaN	NaN	NaN	0.012495	1	9220	9220		85.344	12.211	1	930510			30504	2976	17540	18032	24355	24355					0.07607797762852897
VYSIISVQL	9	Unmodified						0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1021.59282	1020.58555	1.4138	0.0014444	-0.92547	-0.00094545	0.48837	0.00049892	1021.5924892186896	31.138	0.02412	31.133	31.133	31.157	-0.0050716	693	160	1.2062578	0.095558524	1.2047384	244.84137		19.396088	-0.015107	-0.0011089	-0.00075972	NaN	42.995	168	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14661			30505	2976	17540	18032							0.07607797762852897
VYSILDMME	9	Unmodified	_VYSILDMME_					0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7537608926501	2	550.753761	1099.49297	1.5812	0.00087087	-1.7176	-0.00094597	-0.13637	-7.5108E-05	550.7535175664694	35.167	0.096512	35.167	35.07	35.167	-4.5776E-05	1263	43	0.85970795	0.025803149	0.8581885	348.6621	0	10.464691						59	5	2	NaN	NaN	NaN	0.49672	1	12483	12483		9.746	1.5012	1	3770.7	+		30506	13175	17541	18033	24356	24356					-0.0527979135717942
VYSILDMME	9	Unmodified						0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.753761	1099.49297	0.70345	0.00038743	-1.5273	-0.00084115	-0.82382	-0.00045372	550.7534185618923	35.144	0.048302	35.144	35.12	35.168	0	1266	34	0.85786515	0.020277202	0.85786515	347.91473		8.223572	-0.011318	0.00010479	-0.00016167	NaN	9.746	38	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2281.7	+		30507	13175	17541	18033							-0.0527979135717942
VYSILDMME	9	Unmodified						0	0	0			REV__nc|ENSG00000174844|Q6ZR08|DNAH12	REV__nc|ENSG00000174844|Q6ZR08|DNAH12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.753761	1099.49297	1.5812	0.00087087	-1.7176	-0.00094597	-0.13637	-7.5108E-05	550.7535175664694	35.167	0.096512	35.167	35.07	35.167	-4.5776E-05	1263	43	0.85970795	0.025803149	0.8581885	348.6621		10.464691	0.011318	-0.00010486	0.00016167	NaN	9.746	59	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3770.7	+		30508	13175	17541	18033							-0.0527979135717942
VYSKDNPNLLF	11	Unmodified	_VYSKDNPNLLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3429775785	2	655.342978	1308.6714	1.3466	0.00088251	-1.9712	-0.0012918	-0.62458	-0.00040931	655.3418451867497	23.754	0.14449	23.754	23.706	23.851	0	1107	52	0.9552588	0.031148553	0.9552588	386.64612	0	12.607544						191	7	4	NaN	NaN	NaN	0.14414	1	18910	18910		35.523	18.665	1	21674			30509	4933	17542	18034	24357	24357					0.029413378777007892
VYSKDNPNLLF	11	Unmodified	_VYSKDNPNLLF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3429775785	2	655.342978	1308.6714	1.2488	0.00081836	-0.76667	-0.00050243	0.48208	0.00031593	655.3420911705932	23.778	0.14461	23.765	23.717	23.861	-0.013048	1104	43	0.9570911	0.025650322	0.95557165	387.38773	0	10.382111						175	7	3	NaN	NaN	NaN	0.29813	1	18076	18076		25.694	6.3579	1	24329			30510	4933	17542	18034	24358	24358					0.029413378777007892
VYSKDQLQTF	10	Unmodified	_VYSKDQLQTF_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B	ENSG00000138107|ENST00000369905|ACTR1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.81405296355	2	614.814053	1227.61355	1.3553	0.00083325	-1.6437	-0.0010106	-0.28841	-0.00017732	614.8127387525118	18.794	0.07201	18.78	18.756	18.828	-0.014061	1161	58	0.9222442	0.034892023	0.92072475	373.54065	0	14.132477						72	4	2	NaN	NaN	NaN	0.2055	1	16495	16495		35.056	4.4461	1	8672.2			30511	3140;1987	17543	18035	24359	24359					0.008850759522829321
VYSLFLKQFR	10	Unmodified	_VYSLFLKQFR_					0	0	0		ENST00000429090.5_2_3:69828145-69928374:+|nuORF	ENST00000429090.5_2_3:69828145-69928374:+|nuORF	ENST00000429090.5_2_3:69828145-69928374:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	434.25192410029996	3	434.251924	1299.73394	1.0667	0.00046322	-5.872	-0.0025499	-4.8053	-0.0020867	434.249295931947	24.623	0.096487	24.623	24.598	24.695	0	1392	31	0.780288	0.018512845	0.780288	473.76877	0	11.240448						51	5	2	NaN	NaN	NaN	0.65742	1	18776	18776		10.965	3.2825	1	5010.1			30512	6961	17544	18036	24360	24360					0.0960652873654908
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1087.5306174697	1	1087.53062	1086.52334	2.4796	0.0026966	-1.4728	-0.0016018	1.0067	0.0010948	1087.5285918374282	25.371	0.26533	25.371	25.322	25.588	0	126	127	1.544062	0.07437909	1.544062	313.15384	0	15.08493						669	12	5	NaN	NaN	NaN	3.0773E-07	1	12242	12242		130.13	71.899	1	204710			30513	5359	17545	18037	24361	24361					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.2689469681501	2	544.268947	1086.52334	1.8512	0.0010076	0.27292	0.00014854	2.1241	0.0011561	544.2691922113537	25.371	0.21714	25.371	25.322	25.539	0	1242	73	0.87260187	0.04419577	0.87260187	353.9436	0	17.926636						255	10	2	NaN	NaN	NaN	0.14787	1	12244	12244		28.896	9.7773	1	56417			30514	5359	17545	18037	24362	24362					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1087.5306174697	1	1087.53062	1086.52334	1.9655	0.0021376	-0.0083198	-9.0481E-06	1.9572	0.0021285	1087.5304880034355	25.37	0.31365	25.358	25.31	25.624	-0.012011	129	103	1.5422925	0.060166955	1.540773	312.79495	0	12.202545						678	14	4	NaN	NaN	NaN	0.012861	1	11928	11928		84.233	34.271	1	194470			30515	5359	17545	18037	24363	24363					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2689469681501	2	544.268947	1086.52334	1.8664	0.0010158	0.56216	0.00030597	2.4285	0.0013218	544.2695301777535	25.37	0.2413	25.358	25.286	25.527	-0.012011	1242	73	0.87260187	0.044190943	0.8710824	353.9436	0	17.924652						317	11	3	NaN	NaN	NaN	0.060816	1	11929	11929		42.318	12.719	1	53404			30516	5359	17545	18037	24364	24364					-0.01645973376139409
VYSNSIYELL	10	Unmodified	_VYSNSIYELL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8109789583501	2	600.810979	1199.6074	0.6371	0.00038278	-0.43542	-0.00026161	0.20168	0.00012117	600.8105560239969	31.211	0.12066	31.211	31.163	31.284	0	1149	82	0.92958635	0.049562037	0.92958635	376.61215	0	20.079529						242	6	3	NaN	NaN	NaN	0.26393	1	16466	16466		30.035	17.987	1	55733			30517	5359	17546	18038	24365	24365					0.015585577207730239
VYSPFVLL	8	Unmodified	_VYSPFVLL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	937.5393316625001	1	937.539332	936.532055	1.6211	0.0015199	-1.4739	-0.0013818	0.14724	0.00013804	937.537884237516	35.022	0.072403	35.022	34.998	35.07	-4.5776E-05	213	103	1.4926696	0.060403585	1.4911501	303.33835	0	12.275116						160	4	2	NaN	NaN	NaN	0.69631	1	6615	6615		19.285	0	1	11979			30518	3585	17547	18039	24366	24366					0.061250450509987786
VYSPFVLL	8	Unmodified						0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	937.539332	936.532055	0.79251	0.00074301	1.054	0.00098818	1.8465	0.0017312	937.539451920029	35.023	0.072395	35.023	34.999	35.072	0	213	94	1.4926696	0.05508256	1.4926696	303.33835		11.193787	0.00073672	0.0011071	0.00075972	NaN	19.285	138	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9997.4			30519	3585	17547	18039							0.061250450509987786
VYSPFVLLNTL	11	Unmodified	_VYSPFVLLNTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3606390154001	2	633.360639	1264.70673	0.66645	0.0004221	-1.6527	-0.0010468	-0.98626	-0.00062466	633.3599356748517	38.492	0.12017	38.492	38.444	38.564	0	1110	49	0.95342636	0.029321015	0.95342636	386.04453	0	11.872131						152	6	3	NaN	NaN	NaN	0.026761	1	18107	18107		58.398	31.102	1	14165			30520	3585	17548	18040	24367	24367					0.08496000405534687
VYSPFVLLNTL	11	Unmodified	_VYSPFVLLNTL_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.3606390154001	2	633.360639	1264.70673	1.5129	0.00095824	0.023428	1.4838E-05	1.5364	0.00097308	633.3602374214181	38.489	0.12017	38.493	38.421	38.542	0.0040283	1110	43	0.95342636	0.025653124	0.9519069	386.04453	0	10.387024						143	6	4	NaN	NaN	NaN	1.0973E-07	1	17306	17306		100.15	47.366	1	12954			30521	3585	17548	18040	24368	24368					0.08496000405534687
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.2900167612501	2	521.290017	1040.56548	2.2195	0.001157	-1.6135	-0.00084112	0.60596	0.00031588	521.2893264730825	22.935	0.19256	22.935	22.911	23.103	0	1230	100	0.8799654	0.060759306	0.8799654	357.12772	0	24.658722						456	9	4	NaN	NaN	NaN	0.0052656	1	10244	10244		102.05	40.775	1	207450			30522	269	17549	18041	24369	24369					0.0468204682290434
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2900167612501	2	521.290017	1040.56548	1.8673	0.00097339	-1.3202	-0.00068819	0.54712	0.00028521	521.2892842493118	22.982	0.16864	22.969	22.921	23.089	-0.01354	1227	91	0.88180584	0.055226803	0.8802864	357.87463	0	22.413391						408	8	3	NaN	NaN	NaN	0.0034808	1	10030	10030		106.56	59.076	1	198200			30523	269	17549	18041	24370	24370					0.0468204682290434
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.3558879885001	2	628.355888	1254.69722	1.3241	0.00083203	-1.0433	-0.00065557	0.28082	0.00017646	628.3556077439257	27.133	0.14479	27.133	27.084	27.229	0	1107	46	0.9552588	0.02748698	0.9552588	386.81982	0	11.130493						167	7	3	NaN	NaN	NaN	0.03394	1	17896	17896		54.277	26.981	1	18405			30524	269	17550	18042	24371	24371					0.08006232119987544
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000197959|Q9UQ16-5|DNM3;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-5|DNM1;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.3558879885001	2	628.355888	1254.69722	0.91089	0.00057237	-2.3459	-0.0014741	-1.4351	-0.00090173	628.3538053001907	27.156	0.12065	27.146	27.098	27.218	-0.010126	1107	52	0.9552588	0.03115189	0.9537394	386.81982	0	12.614563						165	6	4	NaN	NaN	NaN	0.19064	1	17129	17129		31.198	22.279	1	17489			30525	269	17550	18042	24372	24372					0.08006232119987544
VYSPLGSAYKL	11	Unmodified	_VYSPLGSAYKL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3293388870001	2	599.329339	1196.64412	1.4128	0.00084673	-0.92267	-0.00055298	0.49013	0.00029375	599.3287662155783	23.706	0.14459	23.706	23.658	23.803	0	1167	52	0.91857195	0.031215787	0.91857195	372.16028	0	12.647125						163	7	3	NaN	NaN	NaN	0.65801	1	16364	16364		10.244	2.5611	1	17919			30526	5059	17551	18043	24373	24373					0.05366854337330551
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.7951319289001	2	549.795132	1097.57571	1.8331	0.0010078	-0.50773	-0.00027915	1.3254	0.00072869	549.7952866419421	28.194	0.31367	28.194	28.098	28.412	0	1206	100	0.894683	0.060719907	0.894683	362.85437	0	24.626007						404	14	4	NaN	NaN	NaN	0.0092442	1	12754	12754		93.929	38.516	1	181740			30527	1918	17552	18044	24374	24374					0.030826097574845335
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5829873912	1	1098.58299	1097.57571	1.9483	0.0021403	-0.33674	-0.00036993	1.6115	0.0017704	1098.5844850049918	28.194	0.072382	28.194	28.17	28.243	0	63	70	1.5811787	0.040617228	1.5811787	320.64102	0	8.236603						153	4	3	NaN	NaN	NaN	0.0040343	1	12755	12755		104.89	46.691	1	14011			30528	1918	17552	18044	24375	24375					0.030826097574845335
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5829873912	1	1098.58299	1097.57571	1.612	0.0017709	-4.0219	-0.0044184	-2.4098	-0.0026474	1098.5829580812697	28.194	0.09656	28.185	28.161	28.257	-0.0089779	60	79	1.582944	0.0459224	1.5814246	320.99902	0	9.312439						177	5	3	NaN	NaN	NaN	0.12866	1	12420	12420		31.675	9.5491	1	14744			30529	1918	17552	18044	24376	24376					0.030826097574845335
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7951319289001	2	549.795132	1097.57571	1.4151	0.00077801	-1.6753	-0.00092106	-0.26018	-0.00014305	549.7949386160275	28.218	0.28961	28.209	28.137	28.426	-0.0089779	1206	100	0.894683	0.06071335	0.89316356	362.85437	0	24.623352						519	13	5	NaN	NaN	NaN	0.04743	1	12422	12422		48.002	10.7	1	203650			30530	1918	17552	18044	24377	24377					0.030826097574845335
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.8529811588	2	594.852981	1187.69141	1.7373	0.0010335	-1.4813	-0.00088116	0.25604	0.00015231	594.8517780192351	23.2	0.096415	23.2	23.176	23.272	0	1176	73	0.9130621	0.04408604	0.9130621	369.95975	0	17.863037						217	5	4	NaN	NaN	NaN	0.03394	1	16091	16091		54.277	21.499	1	43082			30531	1478	17553	18045	24378	24378					0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.8529811588	2	594.852981	1187.69141	1.3548	0.00080593	-1.0634	-0.00063258	0.29141	0.00017335	594.8520718389111	23.223	0.096518	23.21	23.186	23.283	-0.013294	1179	58	0.9112251	0.034899533	0.90970564	369.21542	0	14.140778						178	5	3	NaN	NaN	NaN	0.062807	1	15482	15482		46.588	10.353	1	46231			30532	1478	17553	18045	24379	24379					0.10507133608325603
VYSRTFTW	8	Unmodified	_VYSRTFTW_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.2665416649501	2	530.266542	1058.51853	2.1161	0.0011221	-11.505	-0.0061008	-9.389	-0.0049787	530.2601448219859	21.657	0.28918	21.657	21.464	21.754	0	1287	94	0.8449601	0.05713862	0.8449601	342.84515	0	23.184174						784	13	6	NaN	NaN	NaN	0.38377	1	11018	11018		37.302	10.571	1	260730			30533	5737	17554	18046	24380	24380					-0.008388127282387359
VYSRTFTW	8	Unmodified						0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	530.266542	1058.51853	1.4505	0.00076914	-9.951	-0.0052767	-8.5005	-0.0045075	530.2611201867667	21.657	0.26489	21.643	21.499	21.764	-0.013897	1287	94	0.8449601	0.05715102	0.84344065	342.84515		23.189209	-0.0069844	0.0009336	-0.00075972	NaN	37.302	645	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244470			30534	5737	17554	18046							-0.008388127282387359
VYSRTFTWL	9	Unmodified	_VYSRTFTWL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.8085736551501	2	586.808574	1171.60259	2.7965	0.001641	-2.0687	-0.0012139	0.72789	0.00042713	586.8073161462211	26.046	0.2896	26.046	25.998	26.288	0	1164	100	0.9204082	0.060628116	0.9204082	372.9951	0	24.569519						1053	13	5	NaN	NaN	NaN	0.013959	1	15544	15544		80.901	30.94	1	700410			30535	5737	17555	18047	24381	24381					0.02365718368673697
VYSRTFTWL	9	Unmodified	_VYSRTFTWL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.8085736551501	2	586.808574	1171.60259	2.6111	0.0015322	-1.331	-0.00078104	1.2801	0.00075116	586.8078152050015	26.07	0.43438	26.059	25.987	26.421	-0.011137	1167	133	0.91857195	0.080833256	0.9170525	372.25095	0	32.75763						1106	19	4	NaN	NaN	NaN	0.045904	1	14999	14999		48.65	20.861	1	699010			30536	5737	17555	18047	24382	24382					0.02365718368673697
VYSSDYFSF	9	Unmodified	_VYSSDYFSF_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1114.4727682398	1	1114.47277	1113.46549	1.7993	0.0020053	0.87606	0.00097635	2.6754	0.0029816	1114.4739467392105	28.87	0.12068	28.87	28.822	28.943	0	81	55	1.5705823	0.031799078	1.5705823	318.43576	0	6.447296						139	6	3	NaN	NaN	NaN	0.12945	1	13402	13402		31.561	11.006	1	9162.5			30537	4128	17556	18048	24383	24383					-0.08670235301565299
VYSTLCAPAGI	11	Unmodified	_VYSTLCAPAGI_					0	0	0		ENST00000327359.7_1_14:105695225-105781678:-|nuORF;ENST00000379937.6_3_14:105695225-105767012:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.7811672739	2	547.781167	1093.54778	1.3678	0.00074928	-3.8768	-0.0021237	-2.509	-0.0013744	547.7791941814457	24.333	0.07242	24.32	24.296	24.368	-0.012749	1242	106	0.87260187	0.06437904	0.8710824	353.91516	0	26.111237						209	4	2	NaN	NaN	NaN	0.64343	1	12233	12233		11.17	3.63	1	47957			30538	6496	17557	18049	24384	24384					0.004749635057123669
VYSTNFVYKM	10	Unmodified	_VYSTNFVYKM_					0	0	0			REV__ENST00000465804.5_1_3:149237009-149237057:-|nuORF	REV__ENST00000465804.5_1_3:149237009-149237057:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.3075491999	2	626.307549	1250.60055	1.6182	0.0010135	0.091457	5.728E-05	1.7097	0.0010708	626.3079850439018	25.081	0.096516	25.081	25.033	25.129	0	1146	55	0.93142134	0.033025324	0.93142134	377.18057	0	13.373657						118	5	3	NaN	NaN	NaN	0.63397	1	17783	17783		12.57	3.6077	1	19910	+		30539	12296	17558	18050	24385	24385					-0.014730784314679113
VYSTNFVYKM	10	Unmodified						0	0	0			REV__ENST00000465804.5_1_3:149237009-149237057:-|nuORF	REV__ENST00000465804.5_1_3:149237009-149237057:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.307549	1250.60055	1.6182	0.0010135	0.091457	5.728E-05	1.7097	0.0010708	626.3079850439018	25.081	0.096516	25.081	25.033	25.129	0	1146	55	0.93142134	0.033025324	0.93142134	377.18057		13.373657	0	0	0	NaN	12.57	118	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19910	+		30540	12296	17558	18050							-0.014730784314679113
VYSVFGFSF	9	Unmodified	_VYSVFGFSF_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000509410.1_1_5:33461160-33466106:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5087598156001	1	1052.50876	1051.50148	1.9607	0.0020636	0.27609	0.00029058	2.2368	0.0023542	1052.5096607824264	36.446	0.21706	36.446	36.398	36.615	0	108	64	1.5546752	0.037144184	1.5546752	315.43802	0	7.5364075						220	10	3	NaN	NaN	NaN	0.014046	1	10682	10682		80.639	43.336	1	18767			30541	1915	17559	18051	24386	24386					-0.022207333340247715
VYSVPHFF	8	Unmodified	_VYSVPHFF_					0	0	0		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.25290297345003	2	498.252903	994.491253	2.096	0.0010443	-2.5276	-0.0012594	-0.43162	-0.00021505	498.25183678665246	26.046	0.14482	26.046	25.998	26.143	0	1317	76	0.8265074	0.046129405	0.8265074	335.635	0	18.732605						241	7	3	NaN	NaN	NaN	0.30839	1	8370	8370		41.455	21.006	1	26239			30542	7833	17560	18052	24387	24387					-0.006212962686163337
VYSVPTCVLS	10	Unmodified	_VYSVPTCVLS_					0	0	0			REV__ENSG00000272804|ENST00000609664|KRTAP10-7	REV__ENSG00000272804|ENST00000609664|KRTAP10-7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2757177552501	2	534.275718	1066.53688	1.0484	0.00056014	6.8313	0.0036498	7.8797	0.0042099	534.2798810187937	21.416	0.21679	21.402	21.354	21.571	-0.014004	1278	73	0.85049206	0.044243515	0.8489726	345.05637	0	17.950226						266	10	3	NaN	NaN	NaN	0.5917	1	11141	11141		15.463	1.0377	1	31742	+		30543	11414	17561	18053	24388	24388					0.006275611314549678
VYSVYEEFV	9	Unmodified	_VYSVYEEFV_					0	0	0			REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.7713224816	2	567.771322	1133.52809	1.4804	0.00084055	-9.9473	-0.0056478	-8.4669	-0.0048073	567.7653480150547	33.021	0.24134	33.021	32.949	33.19	0	1236	67	0.876284	0.040495276	0.876284	355.2526	0	16.417084						599	11	6	NaN	NaN	NaN	0.36492	1	14216	14216		15.175	0	1	158840	+		30544	12223	17562	18054	24389	24389					-0.03333089233387909
VYSVYEEFV	9	Unmodified						0	0	0			REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.771322	1133.52809	1.4804	0.00084055	-9.9473	-0.0056478	-8.4669	-0.0048073	567.7653480150547	33.021	0.24134	33.021	32.949	33.19	0	1236	67	0.876284	0.040495276	0.876284	355.2526		16.417084	-0.11877	-5.0973E-05	-0.00016068	NaN	15.175	599	11	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158840	+		30545	12223	17562	18054							-0.03333089233387909
VYSVYEEFV	9	Unmodified						0	0	0			REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	REV__ENST00000448967.1_1_2:202173962-202216133:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.771322	1133.52809	1.0176	0.00057776	-9.2675	-0.0052618	-8.25	-0.0046841	567.767318468443	33.261	0.04826	33.259	33.259	33.307	-0.0024757	1233	37	0.87812483	0.02208358	0.8766054	355.99887		8.95285	0.11877	0.00072093	0.00016068	NaN	15.175	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5220.4	+		30546	12223	17562	18054							-0.03333089233387909
VYTASIPAL	9	Unmodified	_VYTASIPAL_					0	0	0		POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5244098797999	1	934.52441	933.517133	1.3409	0.0012531	0.37302	0.0003486	1.714	0.0016017	934.5250369637046	26.915	0.19312	26.904	26.832	27.025	-0.010645	279	70	1.4535767	0.04092419	1.4520572	295.40778	0	8.316956						268	9	3	NaN	NaN	NaN	0.062836	1	6551	6551		41.46	16.499	1	41358			30547	2463	17563	18055	24390	24390					0.0477155318297946
VYTASIPAL	9	Unmodified						0	0	0		POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	934.52441	933.517133	1.4485	0.0013537	0.55639	0.00051996	2.0049	0.0018736	934.5251213188064	26.915	0.19301	26.915	26.843	27.036	0	282	79	1.4517976	0.046269536	1.4517976	295.0462		9.403259	0.0057333	6.5393E-05	-0.00012984	NaN	41.46	276	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43321			30548	2463	17563	18055							0.0477155318297946
VYTATITEI	9	Unmodified	_VYTATITEI_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1010.5404538745	1	1010.54045	1009.53318	1.7452	0.0017636	-1.2631	-0.0012764	0.48205	0.00048713	1010.5390138719074	25.009	0.096521	25.009	24.985	25.081	0	177	70	1.5139546	0.04077673	1.5139546	307.34128	0	8.277924						199	5	3	NaN	NaN	NaN	0.03623	1	8964	8964		52.758	8.4559	1	33253			30549	3130	17564	18056	24391	24391					0.02879214629240323
VYTATITEI	9	Unmodified	_VYTATITEI_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1010.5404538745	1	1010.54045	1009.53318	1.7265	0.0017447	-0.18259	-0.00018451	1.5439	0.0015602	1010.5408074865618	25.008	0.12062	24.996	24.972	25.093	-0.012011	177	70	1.5139546	0.040772438	1.5124352	307.34128	0	8.277039						213	6	3	NaN	NaN	NaN	0.014943	1	8796	8796		78.398	39.48	1	33756			30550	3130	17564	18056	24392	24392					0.02879214629240323
VYTCNECKHHV	11	Unmodified	_VYTCNECKHHV_					0	0	0		nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;ENSG00000100393|ENST00000263253|EP300;EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.7948143529	2	666.794814	1331.57508	1.8147	0.00121	-1.5607	-0.0010407	0.25398	0.00016935	666.7937228726819	26.384	0.24132	26.373	26.324	26.566	-0.011137	1101	76	0.95892316	0.045821548	0.9574037	388.0595	0	18.543152						356	11	5	NaN	NaN	NaN	0.51407	1	18417	18417		17.97	5.4	1	74154			30551	1240;323	17565	18057	24393	24393					-0.07744876225547159
VYTCTAQNL	9	Unmodified	_VYTCTAQNL_					0	0	0		SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4768077601999	1	1012.47681	1011.46953	1.7165	0.0017379	-2.122	-0.0021485	-0.40551	-0.00041057	1012.4746542546931	20.333	0.096176	20.333	20.309	20.405	0	234	67	1.4802408	0.039084673	1.4802408	300.48947	0	7.934204						91	5	2	NaN	NaN	NaN	0.35794	1	9022	9022		15.463	0.28729	1	6560.2			30552	791	17566	18058	24394	24394					-0.0357446907951271
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.2952991044001	2	566.295299	1130.57605	1.9122	0.0010829	-4.2377	-0.0023998	-2.3254	-0.0013169	566.2941678294798	27.519	0.21718	27.519	27.471	27.688	0	1203	85	0.8965218	0.05150044	0.8965218	363.46854	0	20.879333						342	10	3	NaN	NaN	NaN	0.01452	1	14103	14103		79.199	23.705	1	138130			30553	4129	17567	18059	24395	24395					0.015980294773271453
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.2952991044001	2	566.295299	1130.57605	1.2597	0.00071335	-6.65	-0.0037659	-5.3903	-0.0030525	566.2941084526016	27.542	0.19306	27.533	27.46	27.653	-0.0095501	1203	91	0.8965218	0.05519098	0.89500237	363.46854	0	22.37558						499	9	4	NaN	NaN	NaN	0.030696	1	13649	13649		58.2	30.411	1	169000			30554	4129	17567	18059	24396	24396					0.015980294773271453
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5819247587002	1	1006.58192	1005.57465	1.2178	0.0012259	0.21419	0.0002156	1.432	0.0014415	1006.5820268540949	33.552	0.19296	33.552	33.504	33.697	0	117	133	1.5493695	0.07785487	1.5493695	314.54736	0	15.805817						455	9	3	NaN	NaN	NaN	0.03623	1	8820	8820		52.758	13.84	1	138050			30555	255	17568	18060	24397	24397					0.07208395388579447
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5819247587002	1	1006.58192	1005.57465	0.97898	0.00098542	0.39411	0.00039671	1.3731	0.0013821	1006.582139461073	33.551	0.21719	33.549	33.501	33.718	-0.0018463	114	148	1.5511382	0.08670664	1.5496187	314.90646	0	17.602875						528	10	4	NaN	NaN	NaN	0.020004	1	8654	8654		71.993	16.045	1	125970			30556	255	17568	18060	24398	24398					0.07208395388579447
VYTDILIGL	9	Unmodified						0	0	0		DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant;ENSG00000150990|ENST00000308736|DHX37	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1006.58192	1005.57465	1.4259	0.0014353	-2.8932	-0.0029122	-1.4673	-0.0014769	1006.5794555354256	33.792	0.096581	33.79	33.742	33.838	-0.0018501	120	43	1.5476005	0.024764061	1.5460811	314.18826		5.027527	0.11907	-0.0029278	-0.0016442	NaN	52.758	71	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4326.1			30557	255	17568	18060							0.07208395388579447
VYTDVAYYL	9	Unmodified	_VYTDVAYYL_					0	0	0		ENST00000502854.5_1_5:176829295-176830776:-|nuORF;ENSG00000131187|ENST00000253496|F12;ENST00000504406.5_1_5:176829295-176830555:-|nuORF	ENST00000502854.5_1_5:176829295-176830776:-|nuORF	ENST00000502854.5_1_5:176829295-176830776:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1106.5404538745	1	1106.54045	1105.53318	1.5452	0.0017099	-2.4966	-0.0027626	-0.95133	-0.0010527	1106.536316420175	29.014	0.072392	29.007	28.958	29.031	-0.0077209	60	55	1.582944	0.031785727	1.5814246	320.9703	0	6.445099						72	4	2	NaN	NaN	NaN	0.20577	1	12723	12723		24.961	6.9913	1	5033.4			30558	2697	17569	18061	24399	24399					-0.015367853707630275
VYTDWIMAL	9	Oxidation (M)	_VYTDWIM(Oxidation (M))AL_		VYTDWIM(1)AL		VYTDWIM(68)AL	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2757177552501	2	564.275718	1126.53688	1.6482	0.00093003	-2.5418	-0.0014343	-0.89358	-0.00050422	564.2745091121261	32.297	0.19309	32.297	32.249	32.442	0	1197	88	0.9001988	0.053348422	0.9001988	364.975	0	21.629456						347	9	4	NaN	NaN	NaN	0.023074	1	13957	13957		68.108	35.656	1	74234			30559	4731;8112	17570	18062	24400	24400		503			-0.02132438868557074
VYTDWIMAL	9	Oxidation (M)	_VYTDWIM(Oxidation (M))AL_		VYTDWIM(1)AL		VYTDWIM(62)AL	0	0	1		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.2757177552501	2	564.275718	1126.53688	0.91117	0.00051415	-1.79	-0.00101	-0.87879	-0.00049588	564.2748694685871	32.296	0.26545	32.292	32.244	32.51	-0.0037613	1194	79	0.902037	0.047816634	0.9005176	365.72028	0	19.386688						397	12	4	NaN	NaN	NaN	0.02781	1	13515	13515		61.977	35.245	1	83556			30560	4731;8112	17570	18062	24401	24401		503			-0.02132438868557074
VYTEGERLYLF	11	Unmodified	_VYTEGERLYLF_					0	0	0		nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1	nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-5|ARAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.35608495375	2	695.356085	1388.69762	1.2002	0.00083456	-2.9106	-0.0020239	-1.7104	-0.0011894	695.3543792144101	26.77	0.097002	26.77	26.746	26.843	0	1056	55	0.9863805	0.0329293	0.9863805	399.00232	0	13.320282						142	5	3	NaN	NaN	NaN	0.16517	1	19973	19973		33.567	20.466	1	15458			30561	5480	17571	18063	24402	24402					0.018816070491766368
VYTEYTWEVF	10	Unmodified	_VYTEYTWEVF_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.8084362694	2	668.808436	1335.60232	1.1271	0.00075378	-1.0683	-0.00071451	0.058716	3.927E-05	668.8075531513946	32.128	0.21715	32.128	32.056	32.273	0	1110	49	0.95342636	0.029321015	0.95342636	385.8231	0	11.865326						185	10	3	NaN	NaN	NaN	0.15427	1	19338	19338		39.459	20.122	1	17289			30562	3006	17572	18064	24403	24403					-0.052057461418598905
VYTEYTWEVF	10	Unmodified	_VYTEYTWEVF_					0	0	0		ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	ENST00000493944.5_1_7:6618325-6621932:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.8084362694	2	668.808436	1335.60232	0.82254	0.00055012	-0.71112	-0.0004756	0.11142	7.4521E-05	668.8073710675204	32.127	0.19306	32.123	32.075	32.268	-0.0037575	1107	43	0.9552588	0.025650322	0.9537394	386.56464	0	10.379913						190	9	3	NaN	NaN	NaN	0.1877	1	18471	18471		36.586	22.545	1	18209			30563	3006	17572	18064	24404	24404					-0.052057461418598905
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.77693917575	2	597.776939	1193.53933	0.8914	0.00053286	-1.3194	-0.0007887	-0.42799	-0.00025584	597.7760983201298	30.922	0.33784	30.922	30.849	31.187	0	1188	82	0.90571284	0.04959947	0.90571284	366.9613	0	20.095886						438	15	5	NaN	NaN	NaN	0.10363	1	16250	16250		35.296	18.098	1	114340			30564	1431	17573	18065	24405	24405					-0.049702671392424236
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.77693917575	2	597.776939	1193.53933	0.97968	0.00058563	-2.3112	-0.0013816	-1.3315	-0.00079594	597.7752779154551	30.92	0.19311	30.915	30.867	31.06	-0.0050716	1185	76	0.90755045	0.045915484	0.906031	367.70584	0	18.603271						314	9	3	NaN	NaN	NaN	0.019939	1	15626	15626		72.076	26.25	1	118100			30565	1431	17573	18065	24406	24406					-0.049702671392424236
VYTGFLDYF	9	Unmodified	_VYTGFLDYF_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1124.5298891881998	1	1124.52989	1123.52261	2.1037	0.0023657	-0.81786	-0.00091971	1.2859	0.001446	1124.5288040288108	34.469	0.14479	34.469	34.445	34.589	0	60	64	1.582944	0.03708923	1.582944	320.90692	0	7.5190125						154	7	2	NaN	NaN	NaN	0.27442	1	13815	13815		20.555	0.10679	1	12879			30566	839	17574	18066	24407	24407					-0.034207680251938655
VYTGFLDYF	9	Unmodified						0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1124.52989	1123.52261	1.1975	0.0013466	0.53535	0.00060201	1.7328	0.0019486	1125.5321186643323	34.468	0.19299	34.467	34.419	34.612	-0.0006485	63	58	1.5811787	0.033549786	1.5796592	320.549		6.801483	-0.0009477	0.00076062	-0.0016424	NaN	20.555	157	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13156			30567	839	17574	18066							-0.034207680251938655
VYTGIDHHW	9	Unmodified	_VYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF;CEP135-DCAF13|1|fusion	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2670729812	2	564.267073	1126.51959	2.0366	0.0011492	-1.8195	-0.0010267	0.21709	0.0001225	564.2662652566108	16.997	0.12005	16.997	16.997	17.117	0	1191	49	0.90387505	0.029406548	0.90387505	366.46555	0	11.922546						136	6	2	NaN	NaN	NaN	0.03623	1	13954	13954		52.758	24.969	1	18308			30568	4356	17575	18067	24408	24408					-0.03860598359347023
VYTGIDHHW	9	Unmodified	_VYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF;CEP135-DCAF13|1|fusion	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.51380747633334	3	376.513807	1126.51959	1.8054	0.00067977	-1.9932	-0.00075048	-0.1878	-7.0709E-05	376.51296570559174	17.09	0.14408	17.077	17.029	17.173	-0.013294	1488	40	0.7209441	0.02414906	0.71942466	438.4428	0	14.686249						150	7	3	NaN	NaN	NaN	0.17818	1	13510	13510		17.97	2.1478	1	18043			30569	4356	17575	18067	24409	24409					-0.03860598359347023
VYTGIDHHW	9	Unmodified	_VYTGIDHHW_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF;CEP135-DCAF13|1|fusion	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.2670729812	2	564.267073	1126.51959	1.6194	0.00091379	0.022175	1.2513E-05	1.6416	0.0009263	564.2666914767793	17.066	0.16799	17.053	17.029	17.197	-0.013294	1191	43	0.90387505	0.02573073	0.9023556	366.46555	0	10.43222						195	8	3	NaN	NaN	NaN	0.12945	1	13512	13512		31.561	8.2266	1	21757			30570	4356	17575	18067	24410	24410					-0.03860598359347023
VYTGLFYKL	9	Unmodified	_VYTGLFYKL_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.31041785235	2	552.310418	1102.60628	1.4737	0.00081394	2.3598	0.0013033	3.8335	0.0021173	552.3106812597941	26.505	0.16895	26.505	26.432	26.601	0	1203	103	0.8965218	0.062468708	0.8965218	363.57956	0	25.333862						308	8	4	NaN	NaN	NaN	0.13602	1	12962	12962		30.61	11.492	1	29126			30571	4754	17576	18068	24411	24411					0.059083881425067375
VYTGLFYKL	9	Unmodified						0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.310418	1102.60628	1.209	0.00066774	-3.5176	-0.0019428	-2.3086	-0.0012751	552.3065987187755	26.529	0.19303	26.518	26.494	26.687	-0.010645	1203	82	0.8965218	0.04962623	0.89500237	363.57956		20.125671	0.0065887	-0.0043881	-0.00075972	NaN	30.61	296	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33291			30572	4754	17576	18068							0.059083881425067375
VYTGSQITP	9	Unmodified	_VYTGSQITP_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	483.25055724975	2	483.250557	964.486562	1.6189	0.00078232	7.4163	0.003584	9.0352	0.0043663	483.25524289554215	15.028	0.16827	15.016	14.92	15.088	-0.011737	1326	73	0.8209676	0.04433459	0.81944823	333.52682	0	18.011414						209	8	2	NaN	NaN	NaN	0.51576	1	7315	7315		8.962	0.71716	1	17714			30573	2682	17577	18069	24412	24412					0.002897747979545784
VYTHEVVTL	9	Unmodified	_VYTHEVVTL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.7873068968001	2	530.787307	1059.56006	1.7794	0.00094448	-2.5597	-0.0013587	-0.78032	-0.00041419	530.7856048266958	20.069	0.1201	20.069	20.045	20.165	0	1236	70	0.876284	0.04236573	0.876284	355.5504	0	17.189789						203	6	3	NaN	NaN	NaN	0.41766	1	11072	11072		13.003	0.95414	1	19562			30574	4721	17578	18070	24413	24413					0.032663232404502196
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.3157001955	2	525.3157	1048.61685	1.1759	0.00061771	-1.8117	-0.0009517	-0.6358	-0.000334	525.314361355296	32.394	0.14478	32.394	32.345	32.49	0	1236	58	0.876284	0.034978867	0.876284	355.59802	0	14.194489						233	7	4	NaN	NaN	NaN	0.030391	1	10588	10588		58.599	16.815	1	49812			30575	940	17579	18071	24414	24414					0.09448370796917516
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1049.6241239243998	1	1049.62412	1048.61685	1.9966	0.0020957	-0.54988	-0.00057717	1.4468	0.0015186	1049.6238700488768	32.394	0.21714	32.394	32.345	32.563	0	81	85	1.5705823	0.04947579	1.5705823	318.67685	0	10.038849						443	10	4	NaN	NaN	NaN	0.0094682	1	10589	10589		93.472	37.978	1	94174			30576	940	17579	18071	24415	24415					0.09448370796917516
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3157001955	2	525.3157	1048.61685	0.78777	0.00041383	-1.4399	-0.0007564	-0.65213	-0.00034258	525.3147489709819	32.393	0.1689	32.389	32.341	32.51	-0.0037613	1230	52	0.8799654	0.031290054	0.878446	357.09192	0	12.697601						291	8	4	NaN	NaN	NaN	0.078597	1	10369	10369		38.918	16.792	1	59368			30577	940	17579	18071	24416	24416					0.09448370796917516
VYTILTVQL	9	Unmodified	_VYTILTVQL_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1049.6241239243998	1	1049.62412	1048.61685	1.2317	0.0012928	-0.38682	-0.00040601	0.84487	0.0008868	1049.6239543176196	32.369	0.26545	32.365	32.341	32.606	-0.0037613	78	76	1.5723488	0.044163108	1.5708294	319.0353	0	8.960876						436	12	4	NaN	NaN	NaN	0.0094682	1	10370	10370		93.472	22.872	1	95875			30578	940	17579	18071	24417	24417					0.09448370796917516
VYTILTVQL	9	Unmodified						0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.3157	1048.61685	2.0412	0.0010723	-3.0262	-0.0015897	-0.98499	-0.00051743	525.3143972742662	32.61	0.072323	32.607	32.534	32.607	-0.0031052	1230	28	0.8799654	0.016565382	0.878446	357.09192		6.7222595	0.10649	-0.0011632	0.001081	NaN	58.599	33	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2071.9			30579	940	17579	18071							0.09448370796917516
VYTILTVQLF	10	Unmodified	_VYTILTVQLF_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.8499071535999	2	598.849907	1195.68526	1.152	0.00068987	-3.1473	-0.0018848	-1.9953	-0.0011949	598.848262348595	36.663	0.096424	36.663	36.615	36.712	0	1170	31	0.91673553	0.018365204	0.91673553	371.41968	0	7.4407654						85	5	3	NaN	NaN	NaN	0.37681	1	16344	16344		24.562	15.6	1	7222.8			30580	940	17580	18072	24418	24418					0.09524615376767542
VYTILTVQLF	10	Unmodified	_VYTILTVQLF_					0	0	0		ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	ENSG00000082996|ENST00000392894|RNF13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.8499071535999	2	598.849907	1195.68526	1.23	0.00073659	-2.5244	-0.0015117	-1.2944	-0.00077514	598.8484181650659	36.661	0.12025	36.663	36.615	36.735	0.0016747	1167	37	0.91857195	0.022038221	0.9170525	372.1637	0	8.928894						90	6	3	NaN	NaN	NaN	0.61246	1	15699	15699		14.042	6.454	1	6292.6			30581	940	17580	18072	24419	24419					0.09524615376767542
VYTISNFRDYI	11	Unmodified	_VYTISNFRDYI_					0	0	0		ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	695.8537094403001	2	695.853709	1389.69287	0.99263	0.00069072	3.8608	0.0026865	4.8534	0.0033773	695.8556841293343	26.818	0.16893	26.808	26.759	26.928	-0.010645	1056	37	0.9863805	0.0219481	0.9848611	398.99948	0	8.878204						83	8	2	NaN	NaN	NaN	0.7072	1	19042	19042		6.9844	1.2902	1	7896.9			30582	917	17581	18073	24420	24420					0.01360722906429146
VYTKTISLW	9	Unmodified	_VYTKTISLW_					0	0	0		nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613|MTMR1	nc|ENSG00000063601|Q13613|MTMR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.81332468205	2	555.813325	1109.6121	1.117	0.00062084	-2.1442	-0.0011918	-1.0272	-0.00057093	555.8127869382379	24.671	0.072348	24.671	24.647	24.719	0	1185	43	0.90755045	0.02573073	0.90755045	368.0235	0	10.434174						130	4	4	NaN	NaN	NaN	0.25548	1	13276	13276		21.771	2.4864	1	15783			30583	661	17582	18074	24421	24421					0.061674866541807205
VYTKTISLW	9	Unmodified	_VYTKTISLW_					0	0	0		nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613|MTMR1	nc|ENSG00000063601|Q13613|MTMR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.81332468205	2	555.813325	1109.6121	1.206	0.00067031	-0.7499	-0.0004168	0.4561	0.00025351	555.8126191195532	24.695	0.096466	24.682	24.634	24.731	-0.012392	1188	43	0.90571284	0.025727928	0.9041934	367.27832	0	10.433044						125	5	3	NaN	NaN	NaN	0.54912	1	12899	12899		7.5876	0.72439	1	14895			30584	661	17582	18074	24422	24422					0.061674866541807205
VYTLDIPLL	9	Unmodified	_VYTLDIPLL_					0	0	0		ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.6132248871	1	1046.61322	1045.60595	1.6817	0.0017601	0.052375	5.4817E-05	1.7341	0.001815	1046.6138975531644	36.278	0.096416	36.278	36.229	36.326	0	78	64	1.5723488	0.037097096	1.5723488	319.0472	0	7.527405						165	5	3	NaN	NaN	NaN	0.01663	1	10464	10464		76.264	17.664	1	13555			30585	3204	17583	18075	24423	24423					0.08496968422650752
VYTLDIPLL	9	Unmodified						0	0	0		ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1046.61322	1045.60595	1.5596	0.0016323	-0.072966	-7.6367E-05	1.4867	0.001556	1046.613645138409	35.914	0.12046	35.916	35.843	35.964	0.0011024	126	52	1.544062	0.03007865	1.5425426	313.3075		6.103302	-0.18111	-8.7072E-05	-0.014903	NaN	76.264	86	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5291.1			30586	3204	17583	18075							0.08496968422650752
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.80242564475	2	516.802426	1031.5903	1.5509	0.0008015	-0.63307	-0.00032717	0.91781	0.00047432	516.8008695969279	34.252	0.072365	34.252	34.228	34.3	0	1236	37	0.876284	0.022090733	0.876284	355.67407	0	8.96637						69	4	2	NaN	NaN	NaN	0.3389	1	9863	9863		16.417	2.6796	1	5352			30587	3929	17584	18076	24424	24424					0.07576681905607074
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5975748228998	1	1032.59757	1031.5903	1.5901	0.001642	0.53581	0.00055328	2.126	0.0021953	1032.5977185888967	34.276	0.1206	34.276	34.228	34.348	0	117	112	1.5493695	0.065437675	1.5493695	314.44006	0	13.2803955						426	6	3	NaN	NaN	NaN	0.0088919	1	9864	9864		94.648	38.7	1	100140			30588	3929	17584	18076	24425	24425					0.07576681905607074
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5975748228998	1	1032.59757	1031.5903	1.2603	0.0013013	0.91392	0.00094371	2.1742	0.0022451	1032.5985520123386	34.251	0.16871	34.249	34.201	34.37	-0.0012474	114	118	1.5511382	0.068982124	1.5496187	314.799	0	13.999725						432	8	3	NaN	NaN	NaN	0.020004	1	9656	9656		71.993	27.69	1	102450			30589	3929	17584	18076	24426	24426					0.07576681905607074
VYTLDIPVL	9	Unmodified						0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	516.802426	1031.5903	1.3239	0.00068419	-1.6016	-0.00082772	-0.27772	-0.00014352	516.8012855898631	34.251	0.12051	34.249	34.225	34.346	-0.0012474	1233	34	0.87812483	0.020246506	0.8766054	356.42123		8.217834	-0.001177	-0.0003958	0.00016068	NaN	16.417	75	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5795.8			30590	3929	17584	18076							0.07576681905607074
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	530.80549964995	2	530.8055	1059.59645	1.8551	0.00098471	-2.6353	-0.0013988	-0.7802	-0.00041413	530.8043339787348	25.178	0.0965	25.178	25.153	25.25	0	1167	43	0.91857195	0.025708497	0.91857195	372.7085	0	10.431152						147	5	4	NaN	NaN	NaN	0.043119	1	11085	11085		49.833	34.37	1	25266			30591	4906	17585	18077	24427	24427					0.06903200137116983
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.80549964995	2	530.8055	1059.59645	1.2024	0.00063822	-1.9442	-0.001032	-0.74184	-0.00039377	530.8042783587563	25.201	0.12064	25.189	25.141	25.262	-0.012011	1167	40	0.91857195	0.023873508	0.9170525	372.70847	0	9.686615						143	6	3	NaN	NaN	NaN	0.0047854	1	10847	10847		103.03	66.791	1	24293			30592	4906	17585	18077	24428	24428					0.06903200137116983
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.30024709655	2	578.300247	1154.58594	1.9201	0.0011104	3.0179	0.0017453	4.9381	0.0028557	578.8046769386848	29.86	0.19306	29.86	29.763	29.956	0	1203	79	0.8965218	0.047801137	0.8965218	363.3774	0	19.374725						404	9	3	NaN	NaN	NaN	0.15427	1	14974	14974		39.459	19.01	1	48993			30593	4875	17586	18078	24429	24429					0.014831726920419896
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	nc|ENSG00000173120|Q9Y2K7-3|KDM2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.30024709655	2	578.300247	1154.58594	1.1472	0.00066342	2.4095	0.0013934	3.5567	0.0020568	578.804178006901	29.859	0.19303	29.852	29.779	29.972	-0.0070648	1203	76	0.8965218	0.045965135	0.89500237	363.3774	0	18.630554						372	9	3	NaN	NaN	NaN	0.44258	1	14479	14479		21.835	3.8653	1	70423			30594	4875	17586	18078	24430	24430					0.014831726920419896
VYTPVDSLVF	10	Unmodified	_VYTPVDSLVF_					0	0	0		nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000089094|Q8NHM5-4|KDM2B	nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3027897855001	2	570.30279	1138.59103	1.3471	0.00076825	-4.1598	-0.0023724	-2.8128	-0.0016041	570.301808316217	32.08	0.16893	32.08	32.032	32.201	0	1191	79	0.90387505	0.047806323	0.90387505	366.41858	0	19.380035						336	8	4	NaN	NaN	NaN	0.2358	1	14403	14403		32.453	14.654	1	42551			30595	1032	17587	18079	24431	24431					0.02727476554673558
VYTPVDSLVF	10	Unmodified	_VYTPVDSLVF_					0	0	0		nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000089094|Q8NHM5-4|KDM2B	nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1139.5983031044	1	1139.5983	1138.59103	2.0098	0.0022904	-1.6605	-0.0018923	0.34931	0.00039807	1139.5985840589608	32.08	0.072388	32.08	32.056	32.128	0	66	64	1.579413	0.03708136	1.579413	320.13962	0	7.5162354						138	4	3	NaN	NaN	NaN	0.070973	1	14405	14405		49.961	29.274	1	10063			30596	1032	17587	18079	24432	24432					0.02727476554673558
VYTPVDSLVF	10	Unmodified	_VYTPVDSLVF_					0	0	0		nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000089094|Q8NHM5-4|KDM2B	nc|ENSG00000089094|Q8NHM5-4|KDM2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1139.5983031044	1	1139.5983	1138.59103	1.1373	0.001296	-0.85761	-0.00097733	0.27965	0.00031869	1139.5979604519498	32.079	0.072403	32.075	32.051	32.123	-0.0037613	60	55	1.582944	0.03178227	1.5814246	320.85535	0	6.4421387						88	4	2	NaN	NaN	NaN	0.0085408	1	13935	13935		73.133	45.837	1	8726.7			30597	1032	17587	18079	24433	24433					0.02727476554673558
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7929235909501	2	566.792924	1131.57129	2.0903	0.0011847	-3.0969	-0.0017553	-1.0066	-0.00057055	566.7906354379944	19.828	0.12013	19.828	19.78	19.9	0	1194	100	0.902037	0.060706794	0.902037	365.70062	0	24.611542						290	6	4	NaN	NaN	NaN	0.10363	1	14150	14150		35.296	10.335	1	36809			30598	3029	17588	18080	24434	24434					0.01077145334556917
VYTQVTKFLNW	11	Unmodified	_VYTQVTKFLNW_					0	0	0		nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	nc|ENSG00000148702|Q14520-2|HABP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.8744448824001	2	699.874445	1397.73434	1.309	0.00091616	-2.5896	-0.0018124	-1.2806	-0.00089624	699.8721281819832	28.291	0.12063	28.291	28.267	28.388	0	1053	34	0.9882094	0.020115912	0.9882094	399.71667	0	8.136566						65	6	2	NaN	NaN	NaN	0.65755	1	20054	20054		10.244	4.3239	1	4964.8			30599	3647	17589	18081	24435	24435					0.05137903665763588
VYTRHMTWI	9	Unmodified	_VYTRHMTWI_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.8080507264001	2	603.808051	1205.60155	1.5464	0.00093376	-0.8684	-0.00052434	0.67805	0.00040941	603.8075156978013	19.3	0.28801	19.3	19.228	19.516	0	1134	58	0.9387595	0.034858167	0.9387595	380.3071	0	14.121613						436	13	5	NaN	NaN	NaN	0.026443	1	16625	16625		63.765	37.65	1	79350			30600	4782	17590	18082	24436	24436					0.006971807281161091
VYTRHMTWI	9	Unmodified	_VYTRHMTWI_					0	0	0		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.8080507264001	2	603.808051	1205.60155	1.1187	0.00067547	-1.4959	-0.00090323	-0.3772	-0.00022776	604.3086195713655	19.587	0.28885	19.573	19.452	19.741	-0.014141	1134	55	0.9387595	0.033025324	0.93724006	380.3071	0	13.37912						359	13	4	NaN	NaN	NaN	0.1507	1	15962	15962		28.495	1.1991	1	50996			30601	4782	17590	18082	24437	24437					0.006971807281161091
VYTRHMTWI	9	Oxidation (M)	_VYTRHM(Oxidation (M))TWI_		VYTRHM(1)TWI		VYTRHM(64)TWI	0	0	1		nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF;ENST00000481352.6_1_6:43488011-43488806:+|nuORF	nc|ENSG00000171453|O15160-2|POLR1C	nc|ENSG00000171453|O15160-2|POLR1C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8055080374501	2	611.805508	1221.59646	1.243	0.00076047	-1.2158	-0.00074382	0.027217	1.6651E-05	611.8049954763003	16.614	0.071907	16.614	16.566	16.638	0	1146	55	0.93142134	0.033032417	0.93142134	377.27835	0	13.380005						160	4	4	NaN	NaN	NaN	0.026443	1	17016	17016		63.765	26.462	1	20571			30602	4782	17590	18083	24438	24438		506			-0.005471231345154592
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1029.5251381613	1	1029.52514	1028.51786	1.6927	0.0017427	0.039287	4.0447E-05	1.732	0.0017832	1029.5252118455178	24.767	0.16891	24.767	24.743	24.912	0	138	64	1.5369828	0.03717959	1.5369828	311.9385	0	7.545807						175	8	2	NaN	NaN	NaN	0.060816	1	9716	9716		42.318	5.0152	1	32358			30603	892	17591	18084	24439	24439					0.004743478320506256
VYTSGIYNI	9	Unmodified						0	0	0		TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1029.52514	1028.51786	1.2593	0.0012965	0.5811	0.00059826	1.8404	0.0018948	1029.5255524408635	24.791	0.16885	24.779	24.731	24.9	-0.012394	138	67	1.5369828	0.03894806	1.5354633	311.9385		7.9046936	0.0057857	0.00028488	-0.00075972	NaN	42.318	189	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27806			30604	892	17591	18084							0.004743478320506256
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.7663744894501	2	519.766374	1037.5182	1.8206	0.00094628	-1.9604	-0.001019	-0.13985	-7.269E-05	519.7653498775169	19.348	0.19195	19.348	19.3	19.492	0	1266	55	0.85786515	0.033171892	0.85786515	348.17184	0	13.463074						212	9	2	NaN	NaN	NaN	0.029744	1	10102	10102		59.445	20.527	1	62476			30605	1792	17592	18085	24440	24440					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.7663744894501	2	519.766374	1037.5182	1.5566	0.00080907	-1.6188	-0.00084141	-0.06222	-3.234E-05	519.7655617682177	19.37	0.24048	19.356	19.308	19.549	-0.014141	1269	73	0.8560222	0.044243515	0.85450274	347.42386	0	17.956604						311	11	3	NaN	NaN	NaN	0.042649	1	9893	9893		50.033	25.072	1	68566			30606	1792	17592	18085	24441	24441					0.0009376755190260155
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5353684965999	1	1038.53537	1037.52809	2.1605	0.0022438	-1.0025	-0.0010411	1.158	0.0012026	1038.534488135605	25.926	0.12065	25.926	25.877	25.998	0	147	97	1.5316714	0.056675673	1.5316714	310.82483	0	11.501312						358	6	4	NaN	NaN	NaN	0.025843	1	10104	10104		64.55	14.589	1	60677			30607	423	17593	18086	24442	24442					0.010829107666040727
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5353684965999	1	1038.53537	1037.52809	2.1195	0.0022012	-1.3941	-0.0014478	0.72545	0.0007534	1038.5333161405547	25.925	0.1448	25.914	25.89	26.034	-0.0116	147	97	1.5316714	0.056693792	1.530152	310.82483	0	11.504974						347	7	4	NaN	NaN	NaN	0.0034808	1	9895	9895		106.56	56.243	1	60150			30608	423	17593	18086	24443	24443					0.010829107666040727
VYTSWQIPQKF	11	Unmodified	_VYTSWQIPQKF_					0	0	0		ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.8666198502999	2	698.86662	1395.71869	1.3354	0.00093329	-3.4234	-0.0023925	-2.0879	-0.0014592	698.8643815630337	25.274	0.072403	25.274	25.25	25.322	0	1062	46	0.9827221	0.027439594	0.9827221	397.50275	0	11.09906						119	4	4	NaN	NaN	NaN	0.45017	1	20029	20029		21.85	14.866	1	9438.9			30609	6187	17594	18087	24444	24444					0.03665617148681122
VYTSWQIPQKF	11	Unmodified	_VYTSWQIPQKF_					0	0	0		ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.8666198502999	2	698.86662	1395.71869	1.4999	0.0010482	-2.2506	-0.0015729	-0.75076	-0.00052468	698.8662357771556	25.298	0.072334	25.286	25.238	25.31	-0.012011	1062	40	0.9827221	0.023781002	0.98120266	397.50275	0	9.619202						83	4	3	NaN	NaN	NaN	0.29017	1	19092	19092		33.907	22.168	1	7653.8			30610	6187	17594	18087	24445	24445					0.03665617148681122
VYTTNTILL	9	Unmodified	_VYTTNTILL_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	519.2975074423501	2	519.297507	1036.58046	1.7706	0.00091949	-1.6664	-0.00086537	0.10423	5.4124E-05	519.2968430279481	27.857	0.21715	27.857	27.808	28.026	0	1221	76	0.885486	0.0460248	0.885486	359.38626	0	18.67978						231	10	3	NaN	NaN	NaN	0.27608	1	10075	10075		20.449	1.3303	1	44403			30611	2890	17595	18088	24446	24446					0.06363493900244066
VYTTNTILL	9	Unmodified	_VYTTNTILL_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	519.2975074423501	2	519.297507	1036.58046	1.0537	0.00054717	-1.2667	-0.00065778	-0.21301	-0.00011061	519.29678400614	27.88	0.14483	27.87	27.822	27.967	-0.009552	1221	103	0.885486	0.06261742	0.88396657	359.38626	0	25.414093						224	7	4	NaN	NaN	NaN	0.39244	1	9868	9868		14.042	1.0388	1	45756			30612	2890	17595	18088	24447	24447					0.06363493900244066
VYTTNTILL	9	Unmodified	_VYTTNTILL_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5877384181001	1	1037.58774	1036.58046	1.0331	0.0010719	0.51847	0.00053796	1.5515	0.0016098	1037.587834359496	27.88	0.14483	27.87	27.822	27.967	-0.009552	111	67	1.5529068	0.038910866	1.5513873	315.13794	0	7.8963623						253	7	4	NaN	NaN	NaN	0.016254	1	9869	9869		76.739	4.3108	1	42552			30613	2890	17595	18088	24448	24448					0.06363493900244066
VYTTTVHW	8	Unmodified	_VYTTTVHW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.75326711419996	2	503.753267	1005.49198	1.551	0.0007813	-2.7838	-0.0014023	-1.2328	-0.00062103	503.75161129086996	20.237	0.12016	20.237	20.189	20.309	0	1290	64	0.84311575	0.0387277	0.84311575	342.32837	0	15.724548						139	6	3	NaN	NaN	NaN	0.54545	1	8790	8790		28.667	10.886	1	15764			30614	4933	17596	18089	24449	24449					-0.010545016195806056
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2952991044	2	560.295299	1118.57605	1.9387	0.0010862	-1.1729	-0.00065719	0.76576	0.00042905	560.2945507894813	24.092	0.21718	24.092	23.995	24.213	0	1194	133	0.902037	0.08092928	0.902037	365.75174	0	32.814667						644	10	5	NaN	NaN	NaN	0.02781	1	13624	13624		61.977	25.39	1	469130			30615	4933	17597	18090	24450	24450					0.021500294773204587
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.2952991044	2	560.295299	1118.57605	1.9546	0.0010951	-0.5573	-0.00031225	1.3973	0.00078289	560.2950221288804	24.14	0.24125	24.127	23.982	24.224	-0.012749	1194	133	0.902037	0.08092058	0.9005176	365.75174	0	32.811096						674	11	5	NaN	NaN	NaN	0.0088919	1	13218	13218		94.648	53.187	1	411180			30616	4933	17597	18090	24451	24451					0.021500294773204587
VYTVVDEMF	9	Unmodified	_VYTVVDEMF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5125245645	1	1102.51252	1101.50525	1.9845	0.0021879	0.045952	5.0662E-05	2.0304	0.0022386	1102.5130762629742	30.342	0.362	30.342	30.27	30.632	0	72	157	1.5758814	0.09196162	1.5758814	319.5526	0	18.647705						734	16	3	NaN	NaN	NaN	0.0023856	1	12895	12895		109.86	65.555	1	256400			30617	534	17598	18091	24452	24452					-0.04144431622512457
VYTVVDEMF	9	Unmodified	_VYTVVDEMF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.5125245645	1	1102.51252	1101.50525	1.6697	0.0018408	-0.23872	-0.00026319	1.431	0.0015776	1102.5125520050876	30.341	0.2413	30.335	30.238	30.48	-0.0064106	72	130	1.5758814	0.07601702	1.5743619	319.5526	0	15.41452						829	11	5	NaN	NaN	NaN	0.0047854	1	12558	12558		103.03	50.268	1	257800			30618	534	17598	18091	24453	24453					-0.04144431622512457
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(180)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.5074391865999	1	1118.50744	1117.50016	2.7417	0.0030667	-1.7123	-0.0019153	1.0294	0.0011514	1118.5057770793815	25.419	0.26538	25.419	25.371	25.636	0	84	124	1.5688156	0.072481275	1.5688156	318.0635	0	14.694946						838	12	5	NaN	NaN	NaN	1.5841000000000002E-35	1	13567	13567		182.61	86.362	1	315730			30619	534	17598	18092	24454	24454		50			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(160)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.5074391865999	1	1118.50744	1117.50016	2.4063	0.0026914	-0.72854	-0.00081487	1.6777	0.0018765	1118.507346533901	25.419	0.31364	25.407	25.358	25.672	-0.012011	81	133	1.5705823	0.07778895	1.5690628	318.42166	0	15.771027						935	14	5	NaN	NaN	NaN	6.0019E-18	1	13167	13167		158.52	67.093	1	316260			30620	534	17598	18092	24455	24455		50			-0.053887354851212876
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3019325057501	2	608.301933	1214.58931	0.62947	0.0003829	-1.8937	-0.001152	-1.2643	-0.00076906	608.3011171512866	33.914	0.24131	33.914	33.817	34.059	0	1146	88	0.93142134	0.053221762	0.93142134	377.30267	0	21.559235						482	11	5	NaN	NaN	NaN	0.071906	1	16838	16838		49.833	15.394	1	91350			30621	534	17599	18093	24456	24456					-0.009399005256000237
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1215.5965885449	1	1215.59659	1214.58931	2.0128	0.0024467	0.52679	0.00064036	2.5395	0.0030871	1215.5970223708182	33.914	0.048275	33.914	33.89	33.938	0	510	796	1.316029	0.4740057	1.316029	266.55276	0	96.00665						1022	3	2	NaN	NaN	NaN	0.00014632	1	16840	16840		106.56	13.086	1	101490			30622	534	17599	18093	24457	24457					-0.009399005256000237
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3019325057501	2	608.301933	1214.58931	0.55171	0.00033561	-1.0892	-0.00066259	-0.53754	-0.00032699	608.3013705115658	33.913	0.16888	33.911	33.863	34.032	-0.0012474	1146	67	0.93142134	0.040359855	0.9299019	377.30267	0	16.349121						433	8	4	NaN	NaN	NaN	0.091497	1	16168	16168		47.136	12.697	1	90825			30623	534	17599	18093	24458	24458					-0.009399005256000237
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(160)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.2993898168	2	616.29939	1230.58423	1.5856	0.00097723	-1.0947	-0.00067465	0.49097	0.00030258	616.2988762945384	29.594	0.24138	29.594	29.449	29.691	0	1140	109	0.93509084	0.06605774	0.93509084	378.7338	0	26.754944						978	11	5	NaN	NaN	NaN	5.509900000000001E-19	1	17267	17267		158.26	91.104	1	808400			30624	534	17599	18094	24459	24459		50			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(130)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1231.591503167	1	1231.5915	1230.58423	2.4397	0.0030048	-0.42898	-0.00052833	2.0108	0.0024764	1231.5908291944938	29.57	0.12064	29.57	29.522	29.642	0	69	226	1.5776473	0.1328131	1.5776473	319.49506	0	26.896454						318	6	2	NaN	NaN	NaN	3.5243E-06	1	17268	17268		125.02	42.06	1	26163			30625	534	17599	18094	24460	24460		50			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(61)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1231.591503167	1	1231.5915	1230.58423	2.4427	0.0030084	0.17354	0.00021373	2.6162	0.0032221	1231.5922072565552	29.546	0.072416	29.546	29.546	29.618	0	540	304	1.2980826	0.18115246	1.2980826	262.8794	0	36.685837						398	4	3	NaN	NaN	NaN	0.026555	1	17269	17269		60.982	26.528	1	28115			30626	534	17599	18094	24461	24461		50			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(160)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.2993898168	2	616.29939	1230.58423	1.4488	0.00089289	-0.67604	-0.00041664	0.77275	0.00047625	616.2991515149564	29.593	0.24128	29.586	29.49	29.731	-0.0070667	1137	115	0.9369253	0.06973517	0.93540585	379.47678	0	28.244385						1121	11	6	NaN	NaN	NaN	5.509900000000001E-19	1	16557	16557		158.26	58.272	1	1011200			30627	534	17599	18094	24462	24462		50			-0.021842043882088547
VYVAGAPRF	9	Unmodified	_VYVAGAPRF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.27162704285	2	490.271627	978.528701	1.6683	0.00081792	-2.1406	-0.0010495	-0.47225	-0.00023153	490.27055365807263	20.189	0.12017	20.189	20.165	20.285	0	1344	73	0.8098828	0.044324994	0.8098828	328.95715	0	18.003845						104	6	2	NaN	NaN	NaN	0.47587	1	7846	7846		10.605	0	1	10222			30628	3108	17600	18095	24463	24463					0.03857794996986286
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.2973104771	2	488.29731	974.580068	1.8405	0.00089871	-1.0158	-0.000496	0.82471	0.00040271	488.29691320775845	30.463	0.096506	30.463	30.415	30.511	0	1284	70	0.8468043	0.042420685	0.8468043	343.97318	0	17.231354						236	5	4	NaN	NaN	NaN	0.11467	1	7747	7747		33.698	5.0318	1	174310			30629	3133	17601	18096	24464	24464					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.5873444876	1	975.587344	974.580068	1.2562	0.0012255	0.17895	0.00017458	1.4351	0.0014001	975.587217940086	30.849	0.14475	30.849	30.825	30.97	0	174	55	1.5157272	0.031903744	1.5157272	307.84976	0	6.4797974						167	7	2	NaN	NaN	NaN	0.14945	1	7748	7748		28.667	4.8161	1	22205			30630	3133	17601	18096	24465	24465					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.5873444876	1	975.587344	974.580068	2.2285	0.0021741	0.20061	0.00019571	2.4291	0.0023698	975.58770330255	30.463	0.14479	30.463	30.415	30.56	0	174	244	1.5157272	0.14392602	1.5157272	307.84976	0	29.231903						727	7	5	NaN	NaN	NaN	0.024986	1	7750	7750		65.672	18.536	1	688610			30631	3133	17601	18096	24466	24466					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	488.2973104771	2	488.29731	974.580068	1.314	0.00064164	-0.026362	-1.2873E-05	1.2877	0.00062876	488.297274574577	30.462	0.21717	30.456	30.408	30.625	-0.0057545	1281	70	0.84864825	0.042411506	0.8471288	344.7222	0	17.2276						382	10	5	NaN	NaN	NaN	0.032417	1	7590	7590		55.947	5.9148	1	270650			30632	3133	17601	18096	24467	24467					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5873444876	1	975.587344	974.580068	1.3956	0.0013615	0.15081	0.00014712	1.5464	0.0015086	975.5869526489013	31.138	0.096569	31.133	31.036	31.133	-0.0050716	174	49	1.5157272	0.028361917	1.5142077	307.84976	0	5.7604065						108	5	2	NaN	NaN	NaN	0.062836	1	7591	7591		41.46	10.669	1	14034			30633	3133	17601	18096	24468	24468					0.0917611897103825
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5873444876	1	975.587344	974.580068	2.0036	0.0019547	0.67358	0.00065714	2.6772	0.0026119	975.5882677836064	30.462	0.21717	30.456	30.408	30.625	-0.0057545	174	223	1.5157272	0.1314112	1.5142077	307.84976	0	26.690063						916	10	5	NaN	NaN	NaN	0.03623	1	7592	7592		52.758	11.298	1	750950			30634	3133	17601	18096	24469	24469					0.0917611897103825
VYVAIQAVL	9	Unmodified						0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	975.587344	974.580068	1.3938	0.0013598	-0.4285	-0.00041804	0.96532	0.00094176	975.5862701404028	30.92	0.14484	30.915	30.843	30.988	-0.0050716	174	55	1.5157272	0.0319072	1.5142077	307.84976		6.480438	0.033125	-0.00030881	-0.00075972	NaN	28.667	155	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16023			30635	3133	17601	18096							0.0917611897103825
VYVATFLGF	9	Unmodified	_VYVATFLGF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1016.5451453219001	1	1016.54515	1015.53787	1.9755	0.0020082	-0.060716	-6.172E-05	1.9148	0.0019465	1016.5452701879773	34.927	0.31353	34.927	34.855	35.168	0	93	145	1.5635144	0.084932685	1.5635144	317.3769	0	17.240448						920	14	4	NaN	NaN	NaN	0.01663	1	9205	9205		76.264	20.316	1	181500			30636	5689	17602	18097	24470	24470					0.030721435626674065
VYVATFLGF	9	Unmodified	_VYVATFLGF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1016.5451453219001	1	1016.54515	1015.53787	1.9093	0.0019409	-0.24785	-0.00025195	1.6614	0.0016889	1016.5449053470462	34.926	0.33777	34.926	34.853	35.191	-4.5776E-05	90	145	1.5652816	0.084914684	1.5637622	317.73563	0	17.236755						976	15	4	NaN	NaN	NaN	0.024986	1	9031	9031		65.672	3.6953	1	184350			30637	5689	17602	18097	24471	24471					0.030721435626674065
VYVDDIYVI	9	Unmodified	_VYVDDIYVI_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5717540029	1	1098.57175	1097.56448	1.7538	0.0019267	-9.65	-0.010601	-7.8962	-0.0086745	1098.5607755147078	31.114	0.21721	31.109	31.06	31.277	-0.0050716	90	127	1.5652816	0.07422948	1.5637622	317.4174	0	15.052704						482	10	3	NaN	NaN	NaN	0.11467	1	12416	12416		33.698	11.572	1	103750			30638	3109	17603	18098	24472	24472					0.01959787663327006
VYVDFEGINF	10	Unmodified	_VYVDFEGINF_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.790046551	2	601.790047	1201.56554	1.1901	0.00071617	1.3803	0.00083064	2.5703	0.0015468	601.7906735103489	32.78	0.2172	32.78	32.732	32.949	0	1191	82	0.90387505	0.04959947	0.90387505	366.18872	0	20.09433						621	10	5	NaN	NaN	NaN	1.0552E-05	1	16518	16518		117.07	84.613	1	133160			30639	6174	17604	18099	24473	24473					-0.02717997967761221
VYVDFEGINF	10	Unmodified	_VYVDFEGINF_					0	0	0		KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.790046551	2	601.790047	1201.56554	0.87299	0.00052536	0.34251	0.00020612	1.2155	0.00073147	601.7899478150408	32.779	0.19302	32.776	32.751	32.945	-0.0031052	1188	79	0.90571284	0.04775989	0.9041934	366.93326	0	19.34906						572	9	5	NaN	NaN	NaN	0.13037	1	15870	15870		41.785	22.621	1	131210			30640	6174	17604	18099	24474	24474					-0.02717997967761221
VYVDKLQEL	9	Unmodified	_VYVDKLQEL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.80823930415	2	553.808239	1105.60193	1.3278	0.00073537	-1.3462	-0.00074553	-0.018342	-1.0158E-05	553.8069088584014	21.705	0.072279	21.705	21.681	21.754	0	1215	55	0.8891654	0.033121705	0.8891654	360.58414	0	13.431885						93	4	3	NaN	NaN	NaN	0.1507	1	13096	13096		28.495	6.7242	1	8690.3			30641	4290	17605	18100	24475	24475					0.05334878928942999
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.80348827725	2	596.803488	1191.59242	1.7447	0.0010412	-0.76813	-0.00045842	0.97655	0.00058281	596.8030518182426	24.936	0.31372	24.936	24.816	25.129	0	1173	73	0.91489893	0.04408604	0.91489893	370.69006	0	17.862366						543	14	6	NaN	NaN	NaN	0.00013397	1	16195	16195		85.344	29.931	1	425550			30642	4425	17606	18101	24476	24476					0.004291106434266112
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.80348827725	2	596.803488	1191.59242	1.5818	0.00094402	-0.57676	-0.00034421	1.005	0.00059981	596.8028071562446	24.936	0.26539	24.924	24.875	25.141	-0.012392	1173	79	0.91489893	0.04775989	0.9133795	370.69006	0	19.350891						507	12	6	NaN	NaN	NaN	7.9405E-05	1	15582	15582		87.778	26.797	1	404890			30643	4425	17606	18101	24477	24477					0.004291106434266112
VYVEKISFL	9	Unmodified	_VYVEKISFL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.3157001955001	2	549.3157	1096.61685	1.8911	0.0010388	-0.02909	-1.598E-05	1.862	0.0010228	549.3156776279554	26.36	0.12068	26.36	26.336	26.456	0	1215	70	0.8891654	0.042315364	0.8891654	360.6205	0	17.161896						217	6	2	NaN	NaN	NaN	0.013959	1	12711	12711		80.901	22.665	1	103410			30644	4760	17607	18102	24478	24478					0.07240370796944262
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.30058144755	2	539.300581	1076.58661	1.6056	0.00086593	-1.353	-0.00072969	0.25261	0.00013623	539.3003275457714	19.827	0.33695	19.813	19.741	20.078	-0.014141	1260	85	0.8615505	0.05157286	0.8600311	349.50137	0	20.921326						378	15	5	NaN	NaN	NaN	0.054111	1	11528	11528		45.165	12.712	1	148910			30645	1035	17608	18103	24479	24479					0.05138012131760661
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5775080828	1	1052.57751	1051.57023	1.6259	0.0017114	-2.1492	-0.0022622	-0.52331	-0.00055083	1052.5738041117518	30.777	0.048277	30.777	30.728	30.777	0	99	82	1.5599792	0.04775679	1.5599792	316.51392	0	9.689697						86	3	2	NaN	NaN	NaN	0.45297	1	10701	10701		11.548	0	1	10135			30646	4933	17609	18104	24480	24480					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5775080828	1	1052.57751	1051.57023	1.3934	0.0014666	-0.93193	-0.00098093	0.46145	0.00048571	1052.576404962228	31.284	0.024136	31.284	31.259	31.284	0	96	52	1.5617468	0.030053139	1.5617468	316.87256	0	6.097687						60	2	2	NaN	NaN	NaN	0.66529	1	10702	10702		2.1763	0	1	4747.1			30647	4933	17609	18104	24481	24481					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7923922747001	2	526.792392	1051.57023	1.8084	0.00095265	-0.94609	-0.0004984	0.8623	0.00045425	526.7920665301035	30.366	0.19304	30.366	30.318	30.511	0	1233	91	0.87812483	0.055256605	0.87812483	356.33203	0	22.422424						464	9	5	NaN	NaN	NaN	0.011118	1	10703	10703		89.521	36.741	1	254440			30648	4933	17609	18104	24482	24482					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7923922747001	2	526.792392	1051.57023	0.65448	0.00034477	0.3165	0.00016673	0.97097	0.0005115	527.294430578712	31.235	0.096497	31.235	31.211	31.308	0	1236	43	0.876284	0.025772452	0.876284	355.58505	0	10.45816						87	5	2	NaN	NaN	NaN	0.51184	1	10704	10704		9.1232	0	1	8486.4			30649	4933	17609	18104	24483	24483					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5775080828	1	1052.57751	1051.57023	2.4214	0.0025487	-0.55468	-0.00058384	1.8667	0.0019648	1052.576749833464	30.366	0.19304	30.366	30.318	30.511	0	96	121	1.5617468	0.070739746	1.5617468	316.87256	0	14.352814						390	9	2	NaN	NaN	NaN	0.00050979	1	10707	10707		115.51	45.727	1	188260			30650	4933	17609	18104	24484	24484					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.7923922747001	2	526.792392	1051.57023	1.2609	0.00066425	-1.1409	-0.00060102	0.12003	6.3229E-05	526.7918085947123	30.341	0.2413	30.335	30.287	30.528	-0.0064106	1230	100	0.8799654	0.06078559	0.878446	357.07892	0	24.666016						588	11	5	NaN	NaN	NaN	0.020004	1	10483	10483		71.993	16.58	1	337670			30651	4933	17609	18104	24485	24485					0.046509309656585174
VYVGFQVQL	9	Unmodified	_VYVGFQVQL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.5775080828	1	1052.57751	1051.57023	1.5817	0.0016649	0.10004	0.0001053	1.6817	0.0017702	1052.5774355875153	30.341	0.26541	30.335	30.287	30.552	-0.0064106	93	148	1.5635144	0.08669758	1.5619949	317.23117	0	17.590607						551	12	2	NaN	NaN	NaN	1.433E-07	1	10484	10484		136.23	46.975	1	224160			30652	4933	17609	18104	24486	24486					0.046509309656585174
VYVGSFSWW	9	Unmodified	_VYVGSFSWW_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.5305578902	1	1130.53056	1129.52328	2.1318	0.0024101	0.18358	0.00020754	2.3154	0.0026176	1131.533668374144	34.638	0.096539	34.638	34.614	34.71	0	78	61	1.5723488	0.035328627	1.5723488	318.7384	0	7.1616516						107	5	2	NaN	NaN	NaN	0.056143	1	14058	14058		44.302	17.571	1	9256.9			30653	3684	17610	18105	24487	24487					-0.03629928585473863
VYVGSFSWW	9	Unmodified	_VYVGSFSWW_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1130.5305578902	1	1130.53056	1129.52328	2.2805	0.0025781	1.0819	0.0012231	3.3623	0.0038012	1130.5306366813716	34.179	0.43413	34.179	34.131	34.565	0	78	118	1.5723488	0.068938255	1.5723488	318.7384	0	13.974823						1106	19	5	NaN	NaN	NaN	0.014943	1	14059	14059		78.398	33.233	1	320840			30654	3684	17610	18105	24488	24488					-0.03629928585473863
VYVGSFSWW	9	Unmodified	_VYVGSFSWW_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1130.5305578902	1	1130.53056	1129.52328	1.307	0.0014776	1.6946	0.0019158	3.0017	0.0033935	1130.5317076372692	34.227	0.43406	34.225	34.129	34.563	-0.0012474	75	115	1.5741152	0.06716001	1.5725957	319.09647	0	13.614349						1104	19	5	NaN	NaN	NaN	0.0023856	1	13615	13615		109.86	65.555	1	309640			30655	3684	17610	18105	24489	24489					-0.03629928585473863
VYVGSFSWW	9	Unmodified						0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1130.53056	1129.52328	1.1954	0.0013514	0.53791	0.00060812	1.7333	0.0019595	1130.533667301225	34.588	0.04821	34.587	34.587	34.636	-0.0006485	78	46	1.5723488	0.02649784	1.5708294	318.7384		5.371521	-0.025097	0.00021055	-0.00075972	NaN	44.302	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6767			30656	3684	17610	18105							-0.03629928585473863
VYVGSGGWRF	10	Unmodified	_VYVGSGGWRF_					0	0	0		ENST00000598424.5_1_19:17581379-17594898:+|nuORF;ENSG00000130304|ENST00000252595|SLC27A1	ENST00000598424.5_1_19:17581379-17594898:+|nuORF	ENST00000598424.5_1_19:17581379-17594898:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.2852657343501	2	564.285266	1126.55598	1.5793	0.00089117	-0.5771	-0.00032565	1.0022	0.00056552	564.2852162766411	23.85	0.096369	23.837	23.813	23.91	-0.013048	1272	82	0.854179	0.049728274	0.8526596	346.31674	0	20.161743						118	5	2	NaN	NaN	NaN	0.12158	1	13519	13519		42.995	16.263	1	12739			30657	2634	17611	18106	24490	24490					-0.002237214626120476
VYVGTAVNL	9	Unmodified	_VYVGTAVNL_					0	0	0		MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;ENSG00000108510|ENST00000397786|MED13	MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	935.5196588529001	1	935.519659	934.512382	1.3558	0.0012684	-0.33083	-0.0003095	1.0249	0.00095886	935.5183537082136	24.574	0.12059	24.574	24.55	24.671	0	264	73	1.4624695	0.042692184	1.4624695	297.21042	0	8.676117						149	6	3	NaN	NaN	NaN	0.032826	1	6716	6716		55.413	18.111	1	15472			30658	1680	17612	18107	24491	24491					0.04250669040231969
VYVGTAVNL	9	Unmodified	_VYVGTAVNL_					0	0	0		MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant;ENSG00000108510|ENST00000397786|MED13	MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.5196588529001	1	935.519659	934.512382	1.597	0.001494	0.23777	0.00022244	1.8348	0.0017165	935.5200212054115	24.574	0.096516	24.562	24.538	24.634	-0.012392	261	49	1.4642475	0.028449416	1.462728	297.57175	0	5.781616						99	5	2	NaN	NaN	NaN	0.056143	1	6578	6578		44.302	10.604	1	11475			30659	1680	17612	18107	24492	24492					0.04250669040231969
VYVGTLKLI	9	Unmodified	_VYVGTLKLI_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.3207855734	2	503.320786	1004.62702	2.0753	0.0010446	-3.6634	-0.0018439	-1.5881	-0.00079931	503.31848452195095	26.215	0.12066	26.215	26.215	26.336	0	1284	34	0.8468043	0.020285964	0.8468043	343.83002	0	8.236755						65	6	2	NaN	NaN	NaN	0.35794	1	8780	8780		15.463	4.8577	1	6751.4			30660	4165	17613	18108	24493	24493					0.12488978522173966
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.28185737815	2	529.281857	1056.54916	1.8102	0.00095813	-1.8744	-0.0009921	-0.064189	-3.3974E-05	529.2807849966043	22.067	0.14472	22.067	22.019	22.163	0	1209	40	0.892844	0.023909628	0.892844	362.2828	0	9.70163						129	7	2	NaN	NaN	NaN	0.04743	1	10946	10946		48.002	11.767	1	36791			30661	1318	17614	18109	24494	24494					0.023149208661379816
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.28185737815	2	529.281857	1056.54916	0.85288	0.00045141	-0.47773	-0.00025286	0.37514	0.00019856	529.28165922068	22.066	0.14465	22.053	22.029	22.173	-0.013731	1212	43	0.8910048	0.02575022	0.88948536	361.53653	0	10.448456						149	7	2	NaN	NaN	NaN	0.04743	1	10719	10719		48.002	21.887	1	37957			30662	1318	17614	18109	24495	24495					0.023149208661379816
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.29784179335	2	540.297842	1078.58113	1.8449	0.00099681	-0.77476	-0.0004186	1.0702	0.00057821	540.2973066538051	17.069	0.096085	17.069	17.045	17.141	0	1179	34	0.9112251	0.020209372	0.9112251	369.64398	0	8.198059						98	5	3	NaN	NaN	NaN	0.40649	1	11923	11923		13.463	1.4144	1	8212.9			30663	5384	17615	18110	24496	24496					0.04498333339938654
VYVLNDNKI	9	Unmodified	_VYVLNDNKI_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	539.30058144755	2	539.300581	1076.58661	2.202	0.0011875	-1.0061	-0.0005426	1.1959	0.00064495	539.3001769184369	19.804	0.19229	19.804	19.756	19.948	0	1257	79	0.86339295	0.047878683	0.86339295	350.24878	0	19.42276						291	9	4	NaN	NaN	NaN	0.026295	1	11839	11839		63.958	0	1	147550	+		30664	9129	17616	18111	24497	24497					0.05138012131760661
VYVLNDNKI	9	Unmodified						0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	539.300581	1076.58661	2.202	0.0011875	-1.0061	-0.0005426	1.1959	0.00064495	539.3001769184369	19.804	0.19229	19.804	19.756	19.948	0	1257	79	0.86339295	0.047878683	0.86339295	350.24878		19.42276	-0.0045342	0.00015066	0.0016809	NaN	63.958	291	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147550	+		30665	9129	17616	18111							0.05138012131760661
VYVLSLAG	8	Unmodified	_VYVLSLAG_					0	0	0		MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant;ENSG00000183695|ENST00000329773|MRGPRX2	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4767314057	1	821.476731	820.469455	1.4314	0.0011759	-0.41581	-0.00034158	1.0156	0.00083429	821.4763827826657	27.132	0.072397	27.122	27.098	27.17	-0.010126	393	55	1.3858368	0.032155514	1.3843174	282.20456	0	6.548004						86	4	2	NaN	NaN	NaN	0.84207	1	4922	4922		3.5732	0	1	7231.2			30666	5320	17617	18112	24498	24498					0.05203898982802002
VYVLTVTEL	9	Unmodified	_VYVLTVTEL_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.592489445	1	1036.59249	1035.58521	0.98398	0.00102	0.28214	0.00029246	1.2661	0.0013125	1036.5932789547996	30.486	0.19303	30.48	30.432	30.625	-0.0057545	84	79	1.5688156	0.045951605	1.5672961	318.3704	0	9.325287						287	9	4	NaN	NaN	NaN	0.078597	1	9819	9819		38.918	0	1	44246			30667	2343	17618	18113	24499	24499					0.06884378042991557
VYVLTVTEL	9	Unmodified	_VYVLTVTEL_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.592489445	1	1036.59249	1035.58521	1.2997	0.0013472	0.30456	0.00031571	1.6042	0.0016629	1036.5931571203225	30.004	0.26547	29.997	29.949	30.214	-0.0064106	87	139	1.5670487	0.08135927	1.5655292	318.01184	0	16.510803						605	12	5	NaN	NaN	NaN	0.02781	1	9820	9820		61.977	0	1	177670			30668	2343	17618	18113	24500	24500					0.06884378042991557
VYVLTVTEL	9	Unmodified						0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1036.59249	1035.58521	2.188	0.002268	-0.14892	-0.00015437	2.0391	0.0021137	1036.5922384386195	30.004	0.26553	30.004	29.956	30.222	0	87	127	1.5670487	0.074276686	1.5670487	318.01184		15.073456	0.0036629	-0.00022546	0.00075972	NaN	61.977	570	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177490			30669	2343	17618	18113							0.06884378042991557
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.32405654385	2	560.324057	1118.63356	1.6925	0.00094835	-0.25958	-0.00014545	1.4329	0.0008029	560.3239732754669	21.73	0.096312	21.73	21.705	21.802	0	1197	43	0.9001988	0.02573353	0.9001988	365.00616	0	10.434265						117	5	3	NaN	NaN	NaN	0.052553	1	13629	13629		45.827	21.976	1	16638			30670	1368	17619	18114	24501	24501					0.07898871682891695
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.32405654385	2	560.324057	1118.63356	1.4018	0.00078548	-0.58616	-0.00032844	0.81568	0.00045704	560.3231164102203	21.729	0.072241	21.715	21.691	21.764	-0.013897	1194	52	0.902037	0.03125626	0.9005176	365.75153	0	12.673584						115	4	3	NaN	NaN	NaN	0.024221	1	13224	13224		66.656	28.526	1	18224			30671	1368	17619	18114	24502	24502					0.07898871682891695
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.29784179335	2	552.297842	1102.58113	1.5331	0.00084672	-1.4785	-0.00081655	0.054611	3.0161E-05	552.296867157151	21.657	0.2409	21.657	21.585	21.826	0	1233	61	0.87812483	0.036813855	0.87812483	356.11887	0	14.929657						309	11	3	NaN	NaN	NaN	0.0073225	1	12952	12952		97.85	47.888	1	87078			30672	5581	17620	18115	24503	24503					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.29784179335	2	552.297842	1102.58113	1.5319	0.00084606	-1.3333	-0.00073635	0.19864	0.00010971	552.2973932651073	21.657	0.19257	21.643	21.619	21.812	-0.013897	1236	49	0.876284	0.029447913	0.8747646	355.37234	0	11.942444						242	9	3	NaN	NaN	NaN	0.00015011	1	12615	12615		119.86	61.623	1	83944			30673	5581	17620	18115	24504	24504					0.033943333399292897
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.3447919859501	2	552.344792	1102.67503	1.7539	0.00096877	-1.3033	-0.00071986	0.45064	0.00024891	552.3443170101827	25.853	0.12066	25.853	25.805	25.926	0	1194	61	0.902037	0.036746264	0.902037	365.81595	0	14.902252						188	6	4	NaN	NaN	NaN	0.10956	1	12964	12964		34.439	20.397	1	30786			30674	977	17621	18116	24505	24505					0.127800524422355
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.3447919859501	2	552.344792	1102.67503	2.0214	0.0011165	-2.0371	-0.0011252	-0.015654	-8.6464E-06	552.3435619321233	25.877	0.12067	25.865	25.841	25.962	-0.0116	1191	58	0.90387505	0.034907043	0.9023556	366.56134	0	14.156372						189	6	4	NaN	NaN	NaN	0.023074	1	12621	12621		68.108	45.982	1	26368			30675	977	17621	18116	24506	24506					0.127800524422355
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.3213168896501	2	531.321317	1060.62808	2.2319	0.0011859	-1.8011	-0.00095697	0.43081	0.0002289	531.3203855456551	22.308	0.19281	22.308	22.284	22.477	0	1227	55	0.88180584	0.03311813	0.88180584	357.78622	0	13.437439						336	9	5	NaN	NaN	NaN	0.00020136	1	11149	11149		116.74	72.434	1	273400			30676	677	17622	18117	24507	24507					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3213168896501	2	531.321317	1060.62808	1.1256	0.00059805	-0.65921	-0.00035025	0.46637	0.00024779	531.3209845144827	22.332	0.28901	22.318	22.27	22.559	-0.013731	1224	55	0.883646	0.03311813	0.88212657	358.53287	0	13.4374695						354	13	5	NaN	NaN	NaN	0.0040938	1	10902	10902		104.71	54.878	1	241240			30677	677	17622	18117	24508	24508					0.10019192891104467
VYVSNMTDK	9	Unmodified	_VYVSNMTDK_					0	0	0		IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant;nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant	IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	528.75514948865	2	528.755149	1055.49575	0.81955	0.00043334	-5.1209	-0.0027077	-4.3013	-0.0022743	528.7535276736121	35.408	0.096287	35.409	35.361	35.457	0.00053024	1275	37	0.85233563	0.022121787	0.8508162	345.8505	0	8.976288						67	5	2	NaN	NaN	NaN	0.6532	1	10640	10640		3.2116	0.7501	1	5166.6			30678	4339	17623	18118	24509	24509					-0.029781999080341848
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.5259359784334	3	364.525936	1090.55598	1.6318	0.00059482	-1.3438	-0.00048985	0.28796	0.00010497	364.52542473485653	15.101	0.24023	15.101	15.029	15.27	0	1455	55	0.7413668	0.03340262	0.7413668	451.04227	0	20.32193						343	11	4	NaN	NaN	NaN	0.023828	1	12429	12429		58.398	37.884	1	60211			30679	4737	17624	18119	24510	24510					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2852657343501	2	546.285266	1090.55598	1.4218	0.00077672	-0.45387	-0.00024794	0.96795	0.00052878	546.2850903841908	15.101	0.24023	15.101	15.029	15.27	0	1233	88	0.87812483	0.053417623	0.87812483	356.16733	0	21.666168						288	11	3	NaN	NaN	NaN	0.026443	1	12430	12430		63.765	21.447	1	48790			30680	4737	17624	18119	24511	24511					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.5259359784334	3	364.525936	1090.55598	1.6479	0.00060069	-1.8221	-0.00066419	-0.1742	-6.35E-05	364.5253157644097	15.172	0.26412	15.16	15.064	15.328	-0.012202	1458	61	0.7395112	0.037114084	0.73799175	449.91333	0	22.579926						365	12	4	NaN	NaN	NaN	0.25448	1	12116	12116		24.4	8.9376	1	62250			30681	4737	17624	18119	24512	24512					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2852657343501	2	546.285266	1090.55598	1.3498	0.00073737	-1.4539	-0.00079427	-0.10415	-5.6895E-05	546.2841896395041	15.172	0.24016	15.16	15.064	15.304	-0.012202	1233	55	0.87812483	0.033132493	0.8766054	356.16733	0	13.438507						293	11	4	NaN	NaN	NaN	0.015029	1	12117	12117		78.289	31.154	1	45344			30682	4737	17624	18119	24513	24513					0.0143227853739063
VYVTIDENNIL	11	Unmodified	_VYVTIDENNIL_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8402677140501	2	646.840268	1291.66598	1.772	0.0011462	1.1253	0.00072792	2.8974	0.0018741	647.3435535885056	28.75	0.16894	28.75	28.677	28.846	0	1101	61	0.95892316	0.03664732	0.95892316	388.18262	0	14.835236						287	8	4	NaN	NaN	NaN	0.15564	1	18620	18620		34.454	0	1	48302			30683	1422	17625	18120	24514	24514					0.031816142952493465
VYVTIDENNIL	11	Unmodified	_VYVTIDENNIL_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8402677140501	2	646.840268	1291.66598	1.361	0.00088036	-0.74441	-0.00048151	0.61661	0.00039885	646.8384241787908	28.749	0.19304	28.74	28.692	28.885	-0.0083504	1098	58	0.960755	0.03480935	0.9592356	388.9242	0	14.091187						227	9	4	NaN	NaN	NaN	0.009496	1	17789	17789		69.782	46.665	1	37559			30684	1422	17625	18120	24515	24515					0.031816142952493465
VYVTTFLGF	9	Unmodified	_VYVTTFLGF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5557100082	1	1046.55571	1045.54843	1.4592	0.0015272	0.50148	0.00052482	1.9607	0.002052	1046.5564867540133	34.709	0.12047	34.708	34.684	34.804	-0.00064468	78	97	1.5723488	0.056561828	1.5708294	319.04745	0	11.47702						360	6	3	NaN	NaN	NaN	0.023074	1	10243	10243		68.108	12.615	1	63227			30685	5749	17626	18121	24516	24516					0.027481262171022536
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.76363483525	2	496.763635	991.512717	1.6835	0.00083633	-1.8204	-0.00090432	-0.13687	-6.7993E-05	496.76262024351365	21.224	0.24071	21.224	21.175	21.416	0	1254	118	0.8652351	0.07191521	0.8652351	351.37628	0	29.20514						436	11	4	NaN	NaN	NaN	0.032417	1	8270	8270		55.947	26.349	1	118930			30686	4740	17627	18122	24517	24517					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.76363483525	2	496.763635	991.512717	1.1138	0.00055328	-1.3249	-0.00065815	-0.2111	-0.00010487	496.7630851487391	21.224	0.19246	21.21	21.186	21.378	-0.014004	1254	109	0.8652351	0.066379726	0.86371565	351.37628	0	26.957123						412	9	5	NaN	NaN	NaN	0.032417	1	8106	8106		55.947	26.349	1	112980			30687	4740	17627	18122	24518	24518					0.01662088760087954
VYVYPPWGYS	10	Unmodified	_VYVYPPWGYS_					0	0	0		ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.7951319289001	2	615.795132	1229.57571	0.74448	0.00045844	1.374	0.00084609	2.1185	0.0013045	616.2987126967806	34.636	0.096439	34.636	34.587	34.684	-0.0006485	1149	85	0.92958635	0.051405966	0.9280669	376.50775	0	20.820831						141	4	2	NaN	NaN	NaN	0.67523	1	16532	16532		9.746	1.5012	1	15413			30688	1794	17628	18123	24519	24519					-0.02989390242510126
VYWAPMGL	8	Unmodified	_VYWAPMGL_					0	0	0			REV__nc|ENSG00000139220|O75334-8|PPFIA2	REV__nc|ENSG00000139220|O75334-8|PPFIA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	936.4647865109001	1	936.464787	935.45751	1.9386	0.0018154	-0.97594	-0.00091393	0.96263	0.00090147	936.464263069481	24.719	0.072388	24.707	24.682	24.755	-0.012392	345	52	1.4143922	0.030312777	1.4128729	287.43573	0	6.160187						68	4	2	NaN	NaN	NaN	0.77734	1	6594	6594		12.26	4.7193	1	5334	+		30689	9761	17629	18124	24520	24520					-0.012800410320323863
VYWAPMGL	8	Unmodified						0	0	0			REV__nc|ENSG00000139220|O75334-8|PPFIA2	REV__nc|ENSG00000139220|O75334-8|PPFIA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	936.464787	935.45751	1.433	0.0013419	2.42	0.0022663	3.853	0.0036082	936.4671636384403	24.719	0.072374	24.719	24.695	24.767	0	345	43	1.4143922	0.024962068	1.4143922	287.4357		5.0728455	0.0062687	0.0015472	0.00075972	NaN	12.26	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6032.7	+		30690	9761	17629	18124							-0.012800410320323863
VYWAPMGL	8	Unmodified						0	0	0			REV__nc|ENSG00000139220|O75334-8|PPFIA2	REV__nc|ENSG00000139220|O75334-8|PPFIA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.464787	935.45751	1.9386	0.0018154	-0.97594	-0.00091393	0.96263	0.00090147	936.464263069481	24.719	0.072388	24.707	24.682	24.755	-0.012392	345	52	1.4143922	0.030312777	1.4128729	287.43573		6.160187	-0.0062687	-0.001633	-0.00075972	NaN	12.26	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5334	+		30691	9761	17629	18124							-0.012800410320323863
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.3187742007001	2	593.318774	1184.623	1.6837	0.00099899	-1.9092	-0.0011328	-0.22545	-0.00013376	593.3176994160308	25.129	0.19302	25.129	25.057	25.25	0	1164	76	0.9204082	0.045915484	0.9204082	372.9474	0	18.604858						472	9	3	NaN	NaN	NaN	0.024359	1	16005	16005		66.481	38.621	1	124690			30692	2028	17630	18125	24521	24521					0.03806889028464866
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.3187742007001	2	593.318774	1184.623	1.4303	0.00084863	-1.3544	-0.00080359	0.075921	4.5045E-05	593.3177865970878	25.129	0.21705	25.117	25.069	25.286	-0.012011	1164	73	0.9204082	0.04408127	0.91888875	372.9474	0	17.861664						347	10	2	NaN	NaN	NaN	0.013696	1	15397	15397		81.699	42.241	1	118050			30693	2028	17630	18125	24522	24522					0.03806889028464866
VYWNVGFLKY	10	Unmodified	_VYWNVGFLKY_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.83987378355	2	644.839874	1287.66519	1.7033	0.0010983	-6.9953	-0.0045108	-5.292	-0.0034125	645.336890835783	29.112	0.096527	29.112	29.087	29.184	0	1122	64	0.9460945	0.03849417	0.9460945	383.00208	0	15.583405						111	5	2	NaN	NaN	NaN	0.47601	1	18564	18564		20.449	6.4071	1	18663			30694	639	17631	18126	24523	24523					0.032868644368363675
VYWPLFVLI	9	Unmodified	_VYWPLFVLI_					0	0	0		ENSG00000213625|ENST00000371065|LEPROT;ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENSG00000213625|ENST00000371065|LEPROT	ENSG00000213625|ENST00000371065|LEPROT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.3389783265501	2	575.338978	1148.6634	1.7449	0.0010039	-1.2211	-0.00070253	0.52385	0.00030139	575.3383123991066	47.851	0.11979	47.851	47.779	47.899	0	1215	31	0.8891654	0.018395007	0.8891654	360.41766	0	7.4562683						87	6	3	NaN	NaN	NaN	0.10053	1	14770	14770		35.745	23.157	1	5201.8			30695	5963	17632	18127	24524	24524					0.09501855418898231
VYWPLFVLI	9	Unmodified	_VYWPLFVLI_					0	0	0		ENSG00000213625|ENST00000371065|LEPROT;ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENSG00000213625|ENST00000371065|LEPROT	ENSG00000213625|ENST00000371065|LEPROT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3389783265501	2	575.338978	1148.6634	0.26091	0.00015011	-2.2172	-0.0012756	-1.9563	-0.0011255	575.336930667438	47.802	0.023964	47.808	47.784	47.808	0.0060997	1215	25	0.8891654	0.01471597	0.88764596	360.4177	0	5.9650574						30	2	2	NaN	NaN	NaN	0.055365	1	14269	14269		44.632	32.045	1	2896.3			30696	5963	17632	18127	24525	24525					0.09501855418898231
VYWPLFVLI	9	Unmodified	_VYWPLFVLI_					0	0	0		ENSG00000213625|ENST00000371065|LEPROT;ENST00000484243.1_1_1:65886407-65895881:+|nuORF	ENSG00000213625|ENST00000371065|LEPROT	ENSG00000213625|ENST00000371065|LEPROT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3389783265501	2	575.338978	1148.6634	-0.17148	-9.8662E-05	0.73253	0.00042145	0.56104	0.00032279	575.3399098349771	47.85	0.095829	47.856	47.856	47.952	0.0060997	1215	31	0.8891654	0.01839298	0.88764596	360.41766	0	7.455475						71	5	2	NaN	NaN	NaN	0.10053	1	14270	14270		35.745	23.157	1	4940.8			30697	5963	17632	18127	24526	24526					0.09501855418898231
VYWSDSTLH	9	Unmodified	_VYWSDSTLH_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2589135981001	2	554.258914	1106.50327	1.3751	0.00076217	-9.6194	-0.0053317	-8.2443	-0.0045695	554.253600411449	22.139	0.12065	22.139	22.115	22.236	0	1227	73	0.88180584	0.044186175	0.88180584	357.59607	0	17.91867						171	6	3	NaN	NaN	NaN	0.27442	1	13114	13114		20.555	6.8184	1	21578			30698	2881	17633	18128	24527	24527					-0.04571724316087966
VYWSDSTLH	9	Unmodified	_VYWSDSTLH_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.2589135981001	2	554.258914	1106.50327	1.0929	0.00060575	-10.103	-0.0055994	-9.0096	-0.0049937	554.2541979266372	22.163	0.12061	22.149	22.125	22.246	-0.013731	1230	67	0.8799654	0.04050398	0.878446	356.84973	0	16.425476						150	6	3	NaN	NaN	NaN	0.24994	1	12745	12745		22.126	6.951	1	23177			30699	2881	17633	18128	24528	24528					-0.04571724316087966
VYWTQLNMF	9	Unmodified	_VYWTQLNMF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.2891594815001	2	601.289159	1200.56377	0.88947	0.00053483	5.5447	0.003334	6.4342	0.0038688	601.2939006943809	33.045	0.16896	33.045	32.949	33.118	0	1170	88	0.91673553	0.0532735	0.91673553	371.4024	0	21.583038						362	8	5	NaN	NaN	NaN	0.030669	1	16489	16489		58.235	37.722	1	66425			30700	2190	17634	18129	24529	24529					-0.028493302573679102
VYWTQLNMF	9	Unmodified	_VYWTQLNMF_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2891594815001	2	601.289159	1200.56377	0.64703	0.00038905	3.6026	0.0021662	4.2496	0.0025552	601.7939149800933	33.068	0.12052	33.066	32.993	33.114	-0.0024796	1167	76	0.91857195	0.04592049	0.9170525	372.14642	0	18.604034						327	6	5	NaN	NaN	NaN	0.055351	1	15841	15841		44.638	31.636	1	59246			30701	2190	17634	18129	24530	24530					-0.028493302573679102
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(61)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.28661679255	2	609.286617	1216.55868	1.1746	0.00071564	1.1525	0.00070222	2.3271	0.0014179	609.2870269058178	29.329	0.33786	29.329	29.232	29.57	0	1167	85	0.91857195	0.051405966	0.91857195	372.09082	0	20.823303						602	15	4	NaN	NaN	NaN	0.02857	1	16898	16898		60.982	45.519	1	123780			30702	2190	17634	18130	24531	24531		254			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(92)F	0	0	1		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.28661679255	2	609.286617	1216.55868	0.86288	0.00052574	1.164	0.00070922	2.0269	0.001235	609.2869787234022	29.352	0.26542	29.344	29.248	29.513	-0.0077209	1167	70	0.91857195	0.04222405	0.9170525	372.09082	0	17.103912						534	12	4	NaN	NaN	NaN	0.010404	1	16226	16226		91.563	63.774	1	124690			30703	2190	17634	18130	24532	24532		254			-0.04093634119976741
VYYAKMNKNMN	11	Unmodified	_VYYAKMNKNMN_					0	0	0		nc|ENSG00000164796|Q7Z407-5|CSMD3	nc|ENSG00000164796|Q7Z407-5|CSMD3	nc|ENSG00000164796|Q7Z407-5|CSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	688.32848999475	2	688.32849	1374.64243	2.4828	0.001709	5.0569	0.0034808	7.5397	0.0051898	688.3334253387761	28.291	0.072365	28.291	28.267	28.339	0	1077	25	0.9735726	0.014641583	0.9735726	393.86105	0	5.923279						27	4	2	NaN	NaN	NaN	0.76304	1	19850	19850		3.2116	0	1	1640.2			30704	7972	17635	18131	24533	24533					-0.02990846014586168
VYYEVIQLI	9	Unmodified	_VYYEVIQLI_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	570.3209825386501	2	570.320983	1138.62741	0.91711	0.00052305	-3.1008	-0.0017684	-2.1836	-0.0012454	570.3187649909454	33.745	0.12063	33.745	33.697	33.817	0	1173	34	0.91489893	0.020202816	0.91489893	370.8874	0	8.189941						107	6	2	NaN	NaN	NaN	0.42773	1	14409	14409		12.588	1.0394	1	15672			30705	5844	17636	18132	24534	24534					0.06364353451385796
VYYEVIQLI	9	Unmodified	_VYYEVIQLI_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.3209825386501	2	570.320983	1138.62741	0.4985	0.00028431	-1.2528	-0.0007145	-0.7543	-0.00043019	570.3199335006751	33.744	0.12069	33.742	33.694	33.814	-0.0018463	1170	34	0.91673553	0.02020061	0.9152161	371.63193	0	8.189056						116	6	3	NaN	NaN	NaN	0.12945	1	13940	13940		31.561	13.762	1	13840			30706	5844	17636	18132	24535	24535					0.06364353451385796
VYYGPSDF	8	Unmodified	_VYYGPSDF_					0	0	0		nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	nc|ENSG00000096093|Q5JVL4-3|EFHC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.21090077299993	2	474.210901	946.407249	0.6451	0.00030591	2.2235	0.0010544	2.8686	0.0013603	474.21234534834736	30.993	0.14481	30.988	30.915	31.06	-0.0050716	1311	61	0.83019954	0.03693348	0.8286801	337.36792	0	15.008636						98	7	2	NaN	NaN	NaN	0.84651	1	6849	6849		1.6704	0	1	7593.8			30707	1138	17637	18133	24536	24536					-0.06809872156202346
VYYGSDATL	9	Unmodified	_VYYGSDATL_					0	0	0			REV__nc|ENSG00000179403|Q6PCB0-2|VWA1	REV__nc|ENSG00000179403|Q6PCB0-2|VWA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	988.4622035535	1	988.462204	987.454927	2.0298	0.0020064	-0.30559	-0.00030206	1.7242	0.0017044	988.4619516858629	24.912	0.16894	24.912	24.864	25.033	0	222	58	1.4873441	0.03373158	1.4873441	302.03015	0	6.8497925						205	8	3	NaN	NaN	NaN	0.11467	1	8115	8115		33.698	8.7373	1	29285	+		30708	10807	17638	18134	24537	24537					-0.039302179559967954
VYYPELFVW	9	Unmodified	_VYYPELFVW_					0	0	0		ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion	ENSG00000134986|ENST00000257435|NREP	ENSG00000134986|ENST00000257435|NREP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.3078751634	2	608.307875	1214.6012	1.2527	0.00076205	-1.2473	-0.00075877	0.0054043	3.2875E-06	608.3071008726562	36.928	0.28889	36.928	36.88	37.169	0	1170	52	0.91673553	0.031219184	0.91673553	371.35367	0	12.646362						539	13	5	NaN	NaN	NaN	0.020004	1	16843	16843		71.993	45.261	1	233890			30709	2910	17639	18135	24538	24538					0.0024808427988318726
VYYPELFVW	9	Unmodified	_VYYPELFVW_					0	0	0		ENSG00000134986|ENST00000257435|NREP;ENST00000507742.5_1_5:111066620-111092910:-|nuORF;nc|ENSG00000134986|Q16612-2|NREP;WDR36-NREP|1|fusion	ENSG00000134986|ENST00000257435|NREP	ENSG00000134986|ENST00000257435|NREP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.3078751634	2	608.307875	1214.6012	1.0013	0.00060911	-1.0714	-0.00065176	-0.070111	-4.2649E-05	608.307220530477	36.926	0.31265	36.928	36.856	37.169	0.0022469	1167	64	0.91857195	0.038569033	0.9170525	372.09756	0	15.623627						579	14	5	NaN	NaN	NaN	0.03623	1	16174	16174		52.758	27.797	1	198730			30710	2910	17639	18135	24539	24539					0.0024808427988318726
VYYPVRHHL	9	Unmodified	_VYYPVRHHL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	395.21721386013337	3	395.217214	1182.62981	1.4164	0.0005598	-2.7868	-0.0011014	-1.3704	-0.00054159	395.2157609940542	14.165	0.14415	14.165	14.141	14.285	0	1437	67	0.7524962	0.040807724	0.7524962	457.3691	0	24.80304						170	7	2	NaN	NaN	NaN	0.17818	1	15934	15934		17.97	11.352	1	19937			30711	5616	17640	18136	24540	24540					0.045802466996974545
VYYTYGYF	8	Unmodified	_VYYTYGYF_					0	0	0			REV__ENSG00000164414|ENST00000369552|SLC35A1	REV__ENSG00000164414|ENST00000369552|SLC35A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2422009014	2	538.242201	1074.46985	1.4378	0.00077388	-4.3795	-0.0023572	-2.9417	-0.0015834	538.2400566993028	26.287	0.16889	26.276	26.252	26.421	-0.011137	1317	76	0.8265074	0.0461244	0.82498795	335.2939	0	18.711578						208	8	3	NaN	NaN	NaN	0.62311	1	11430	11430		23.85	0.51602	1	22737	+		30712	10338	17641	18137	24541	24541					-0.06440726087998883
VYYVEEGLRQF	11	Unmodified	_VYYVEEGLRQF_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	701.8537094403	2	701.853709	1401.69287	0.87122	0.00061147	-0.16844	-0.00011822	0.70278	0.00049325	701.8515351336815	27.036	0.14481	27.036	27.012	27.157	0	1047	61	0.99186665	0.03657633	0.99186665	401.18484	0	14.794159						199	7	4	NaN	NaN	NaN	0.17366	1	20076	20076		32.778	9.6604	1	22951			30713	5555	17642	18138	24542	24542					0.008087229064130952
VYYVEEGLRQF	11	Unmodified						0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	701.853709	1401.69287	0.73323	0.00051462	-1.9678	-0.0013811	-1.2346	-0.00086649	701.8524047688603	27.06	0.14481	27.049	27.001	27.146	-0.010126	1050	61	0.9900381	0.036580205	0.9885187	400.44528		14.795776	0.0066336	-0.00092221	-0.001674	NaN	32.778	187	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21162			30714	5555	17642	18138							0.008087229064130952
WAAGKIAI	8	Unmodified	_WAAGKIAI_					0	0	0			REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	REV__tr|U7SX00|U7SX00_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01231PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.2501633192499	2	415.250163	828.485774	2.2351	0.00092812	-3.3571	-0.001394	-1.122	-0.00046593	415.25037597239975	25.708	0.024124	25.708	25.708	25.732	0	1389	37	0.7821392	0.02221781	0.7821392	318.48438	0	9.046997						34	2	2	NaN	NaN	NaN	0.84945	1	5124	5124		0	0	1	2325.2	+		30715	13546	17643	18139	24543	24543					0.06467024939547628
WAAGRPPQ	8	Unmodified	_WAAGRPPQ_					0	0	0			REV__ENST00000473880.5_1_7:102112843-102113359:+|nuORF	REV__ENST00000473880.5_1_7:102112843-102113359:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.73266905785	2	441.732669	881.450785	0.745	0.00032909	1.0895	0.00048125	1.8345	0.00081035	441.73343110282923	30.68	0.072378	30.68	30.656	30.728	0	1377	31	0.7895419	0.018502772	0.7895419	321.1841	0	7.526886						53	4	2	NaN	NaN	NaN	0.84876	1	5821	5821		0.39566	0	1	4477.4	+		30716	12340	17644	18140	24544	24544					0.005317821316111804
WAALEGLSF	9	Unmodified	_WAALEGLSF_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.5040087887	1	993.504009	992.496732	1.3715	0.0013626	-0.061008	-6.0612E-05	1.3105	0.001302	993.5045186120004	32.73	0.12067	32.727	32.703	32.824	-0.0031052	264	55	1.4624695	0.031998634	1.46095	296.95816	0	6.4974365						114	6	2	NaN	NaN	NaN	0.074859	1	8144	8144		39.459	11.67	1	9453.7			30717	13662	17645	18141	24545	24545					0.00018382523182935984
WADPGKYAL	9	Unmodified	_WADPGKYAL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.7610921463	2	510.761092	1019.50763	1.275	0.00065121	-1.1359	-0.00058015	0.13912	7.1059E-05	510.7604809035458	21.657	0.14434	21.643	21.595	21.74	-0.013897	1347	88	0.8080346	0.05355066	0.8065152	328.02356	0	21.739014						173	7	3	NaN	NaN	NaN	0.27608	1	9156	9156		20.449	7.8608	1	14395			30718	1424	17646	18142	24546	24546					-0.0013421510253692759
WADPGKYAL	9	Unmodified						0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	510.761092	1019.50763	1.8573	0.00094866	-3.3789	-0.0017258	-1.5216	-0.00077717	510.75917291750307	21.633	0.14462	21.633	21.609	21.754	0	1347	91	0.8080346	0.055394232	0.8080346	328.02356		22.487427	-0.005064	-0.0016014	0.00075972	NaN	20.449	171	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15670			30719	1424	17646	18142							-0.0013421510253692759
WADTFIVSL	9	Unmodified	_WADTFIVSL_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1051.5458736034	1	1051.54587	1050.5386	1.7652	0.0018562	-1.198	-0.0012597	0.56719	0.00059642	1051.5455996940082	34.179	0.048241	34.179	34.179	34.228	0	141	49	1.5352125	0.028334856	1.5352125	311.4928	0	5.749115						86	3	3	NaN	NaN	NaN	0.043119	1	10650	10650		49.833	13.246	1	10200			30720	1571	17647	18143	24547	24547					0.015349382117165078
WADTFIVSL	9	Unmodified						0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1051.54587	1050.5386	1.3016	0.0013687	3.8195	0.0040163	5.121	0.005385	1051.5497363930428	34.178	0.072441	34.177	34.153	34.225	-0.0012474	141	61	1.5352125	0.035422325	1.5336931	311.49277		7.1871643	-0.0011953	0.001735	-0.00075972	NaN	49.833	134	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15627			30721	1571	17647	18143							0.015349382117165078
WADVSGGGP	9	Unmodified	_WADVSGGGP_					0	0	0		nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-3|SEC61A2	nc|ENSG00000065665|Q9H9S3-3|SEC61A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	845.3788082751003	1	845.378808	844.371532	1.9433	0.0016428	-9.2111	-0.0077868	-7.2677	-0.006144	845.37154402403	26.07	0.048286	26.059	26.035	26.083	-0.011137	501	70	1.3214091	0.041239023	1.3198897	268.95938	0	8.393799						87	3	2	NaN	NaN	NaN	0.56671	1	5189	5189		6.8632	0.613	1	6958.7			30722	693	17648	18144	24548	24548					-0.05687909613163811
WAGAQGAG	8	Unmodified	_WAGAQGAG_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF;ENST00000472301.5_1_3:49027419-49042675:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.3314641520001	1	717.331464	716.324188	1.8962	0.0013602	-6.8121	-0.0048865	-4.9158	-0.0035263	717.3280090110264	26.263	0.072416	26.263	26.239	26.312	0	1074	37	0.9754029	0.02195996	0.9754029	199.10088	0	4.4825134						54	4	2	NaN	NaN	NaN	0.82332	1	3536	3536		6.0903	2.5171	1	3294.9			30723	7162	17649	18145	24549	24549					-0.04532144093525403
WAKFLRDFE	9	Unmodified	_WAKFLRDFE_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.3140231738001	2	606.314023	1210.61349	1.0005	0.00060662	4.1529	0.002518	5.1534	0.0031246	606.3177070503149	27.228	0.096554	27.218	27.146	27.242	-0.010124	1134	52	0.9387595	0.03118217	0.93724006	380.28925	0	12.631805						70	5	2	NaN	NaN	NaN	0.67818	1	16063	16063		1.072	0.14616	1	5794.4			30724	4373	17650	18146	24550	24550					0.0166112074296052
WAMKQFCMI	9	Unmodified	_WAMKQFCMI_					0	0	0			REV__ENST00000566604.5_1_16:8895764-8898668:+|nuORF	REV__ENST00000566604.5_1_16:8895764-8898668:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	386.5149976477667	3	386.514998	1156.52316	1.8267	0.00070604	2.9021	0.0011217	4.7288	0.0018277	386.5162649021134	36.372	0.072258	36.374	36.35	36.422	0.0016747	1491	31	0.7190863	0.018577218	0.71756685	437.176	0	11.294189						53	4	2	NaN	NaN	NaN	0.66196	1	14529	14529		1.1768	0.4607	1	6406.6	+		30725	12807	17651	18147	24551	24551					-0.048837111729881144
WAQQAVYAF	9	Unmodified	_WAQQAVYAF_					0	0	0			REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant	REV__ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.26654166495	2	542.266542	1082.51853	1.7794	0.00096489	-6.702	-0.0036343	-4.9226	-0.0026694	542.7628880546954	19.058	0.096062	19.044	19.02	19.116	-0.014059	1284	58	0.8468043	0.035024226	0.8452849	343.49557	0	14.207153						96	5	2	NaN	NaN	NaN	0.49672	1	11768	11768		9.746	3.8262	1	7088.8	+		30726	8114	17652	18148	24552	24552					-0.019428127282708374
WAQYALQFASQ	11	Unmodified	_WAQYALQFASQ_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.215538594	3	438.215539	1311.62479	0.9217	0.00040391	-2.4746	-0.0010844	-1.5529	-0.00068051	438.5488190023598	20.574	0.19256	20.559	20.439	20.632	-0.014086	1485	52	0.72280174	0.031569242	0.7212823	438.82297	0	19.166107						127	9	2	NaN	NaN	NaN	0.74794	1	18140	18140		1.6806	0	1	16267	+		30727	8915	17653	18149	24553	24553					-0.018561019535809464
WARHEKHG	8	Unmodified	_WARHEKHG_					0	0	0			REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.7597494756	2	510.759749	1019.50495	1.8573	0.00094866	-0.75017	-0.00038316	1.1072	0.0005655	510.75917291750307	21.633	0.14462	21.633	21.609	21.754	0	1347	91	0.8080346	0.055394232	0.8080346	328.02356	0	22.487427						171	7	3	NaN	NaN	NaN	0.78264	1	9344	9344		11.548	0	1	15670	+		30728	12893	17654	18150	24554	24554					-0.004026257168220582
WARWRHMFREQ	11	Unmodified	_WARWRHMFREQ_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.9334826192	3	534.933483	1601.77862	2.2413	0.0011989	-5.3372	-0.002855	-3.0959	-0.0016561	534.9309270970829	23.007	0.096169	23.007	22.983	23.079	0	1374	40	0.791392	0.0240497	0.791392	479.558	0	14.573334						114	5	3	NaN	NaN	NaN	0.78047	1	20752	20752		0.15888	0	1	13430			30729	5391	17655	18151	24555	24555					0.001800293309315748
WAVAELSA	8	Unmodified	_WAVAELSA_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|254|2|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|254|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4355948724999	1	846.435595	845.428318	1.7678	0.0014963	-3.2168	-0.0027228	-1.449	-0.0012265	846.4336516200528	53.674	0.15372	53.674	53.626	53.779	0	396	46	1.3840506	0.026797771	1.3840506	281.70377	0	5.454315						168	6	3	NaN	NaN	NaN	0.84692	1	5330	5330		1.4396	0	1	24967	+		30730	13016	17656	18152	24556	24556					-0.0005786205667845934
WAVAELSA	8	Unmodified						0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|254|2|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|254|2|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	846.435595	845.428318	1.7678	0.0014963	-3.2168	-0.0027228	-1.449	-0.0012265	846.4336516200528	53.674	0.15372	53.674	53.626	53.779	0	396	46	1.3840506	0.026797771	1.3840506	281.70377		5.454315	-0.019158	-0.0017063	-0.00013344	NaN	1.4396	168	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24967	+		30731	13016	17656	18152							-0.0005786205667845934
WAWQDNKFFLH	11	Unmodified	_WAWQDNKFFLH_					0	0	0			REV__ROCK1-DCC|1|fusion	REV__ROCK1-DCC|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	746.3620359989	2	746.362036	1490.70952	0.67336	0.00050257	5.0375	0.0037598	5.7108	0.0042624	746.3655617488773	35.385	0.14476	35.385	35.289	35.434	0	1020	46	1.0083145	0.027392387	1.0083145	407.59955	0	11.073059						109	7	2	NaN	NaN	NaN	0.73455	1	20555	20555		5.1889	0.87873	1	8282.1	+		30732	13306	17657	18153	24557	24557					-0.016207314169832898
WCAPITALGEN	11	Unmodified	_WCAPITALGEN_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7816985901501	2	587.781699	1173.54884	1.4727	0.00086564	-8.8842	-0.0052219	-7.4114	-0.0043563	587.7763762583238	21.007	0.12028	21.007	20.983	21.103	0	1218	85	0.8873258	0.05150044	0.8873258	359.58154	0	20.870117						159	6	2	NaN	NaN	NaN	0.7072	1	15595	15595		6.9844	0.12115	1	16993	+		30733	10128	17658	18154	24558	24558					-0.03098822125366496
WCAPITALGEN	11	Unmodified						0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	587.781699	1173.54884	1.4727	0.00086564	-8.8842	-0.0052219	-7.4114	-0.0043563	587.7763762583238	21.007	0.12028	21.007	20.983	21.103	0	1218	85	0.8873258	0.05150044	0.8873258	359.58154		20.870117	-0.017165	-0.00080738	-0.00016008	NaN	6.9844	159	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16993	+		30734	10128	17658	18154							-0.03098822125366496
WCAPITALGEN	11	Unmodified						0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	587.781699	1173.54884	0.94348	0.00055456	-7.838	-0.004607	-6.8945	-0.0040525	587.778530529066	21.055	0.1204	21.041	20.993	21.113	-0.014086	1215	73	0.8891654	0.04413849	0.88764596	360.32703		17.88675	0.017165	0.00042242	0.00016008	NaN	6.9844	230	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21376	+		30735	10128	17658	18154							-0.03098822125366496
WCLHVVRI	8	Unmodified	_WCLHVVRI_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	342.52862340036666	3	342.528623	1024.56404	1.7737	0.00060755	2.6521	0.00090843	4.4258	0.001516	342.5297577880369	15.582	0.096063	15.582	15.558	15.654	0	1443	37	0.7487872	0.022258759	0.7487872	455.92197	0	13.5529175						63	5	2	NaN	NaN	NaN	0.80071	1	9566	9566		9.746	3.4958	1	7002.5			30736	1209	17659	18155	24559	24559					0.052741342531362534
WCLLMDWTF	9	Unmodified	_WCLLMDWTF_					0	0	0			REV__ENST00000437329.5_2_20:35862459-35865039:+|nuORF	REV__ENST00000437329.5_2_20:35862459-35865039:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.7722879968001	2	607.772288	1213.53002	1.6612	0.0010096	-8.0415	-0.0048874	-6.3803	-0.0038778	607.7671523439436	25.37	0.36188	25.358	25.262	25.624	-0.012011	1212	112	0.8910048	0.06798434	0.88948536	360.9342	0	27.53955						803	16	4	NaN	NaN	NaN	0.20577	1	16143	16143		24.961	0.39899	1	168830	+		30737	12183	17660	18156	24560	24560					-0.06820075020777949
WCLLMDWTF	9	Unmodified						0	0	0			REV__ENST00000437329.5_2_20:35862459-35865039:+|nuORF	REV__ENST00000437329.5_2_20:35862459-35865039:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	607.772288	1213.53002	1.6612	0.0010096	-8.0415	-0.0048874	-6.3803	-0.0038778	607.7671523439436	25.37	0.36188	25.358	25.262	25.624	-0.012011	1212	112	0.8910048	0.06798434	0.88948536	360.9342		27.53955	-0.0061304	0.00058051	-0.00075972	NaN	24.961	803	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168830	+		30738	12183	17660	18156							-0.06820075020777949
WCPMSRLRL	9	Unmodified	_WCPMSRLRL_					0	0	0		TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant;TP53|p.P191Qfs*51|1|0.69|ENSG00000141510|chr17:7674944-7674959|CGGATAAGATGCTGAG/-|frameshift_variant;TP53|p.V173Afs*72|1|0.09|ENSG00000141510|chr17:7675088-7675094|CGCCTCA/-|frameshift_variant;TP53|p.D184Afs*62|1|0.68|ENSG00000141510|chr17:7675058-7675061|CTAT/-|frameshift_variant;TP53|p.V203Gfs*44|1|0.68|ENSG00000141510|chr17:7674923-7674923|A/-|frameshift_variant;TP53|p.N200Ifs*47|1|0.17|ENSG00000141510|chr17:7674932-7674932|T/-|frameshift_variant;TP53|p.L206Wfs*41|1|0.36|ENSG00000141510|chr17:7674914-7674914|A/-|frameshift_variant;TP53|p.H214Qfs*33|1|0.55|ENSG00000141510|chr17:7674889-7674889|A/-|frameshift_variant;TP53|p.H178Tfs*69|1|0.53|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.G199Efs*48|1|0.77|ENSG00000141510|chr17:7674937-7674937|T/-|frameshift_variant;TP53|p.C176Afs*71|1|0.09|ENSG00000141510|chr17:7675086-7675086|A/-|frameshift_variant;TP53|p.I195Lfs*53|1|0.3|ENSG00000141510|chr17:7674949-7674950|-/AG|frameshift_variant;TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant	TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant	TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.3046209679501	2	581.304621	1160.59469	1.613	0.00093765	-10.339	-0.0060102	-8.7262	-0.0050726	581.2986890759701	30.463	0.072372	30.463	30.439	30.511	0	1035	112	0.99917877	0.06756061	0.99917877	404.96155	0	27.381958						191	4	3	NaN	NaN	NaN	0.68748	1	15172	15172		0.27539	0.045253	1	14865			30739	13721	17661	18157	24561	24561					0.02081544575889893
WCPMSRLRL	9	Unmodified						0	0	0		TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant;TP53|p.P191Qfs*51|1|0.69|ENSG00000141510|chr17:7674944-7674959|CGGATAAGATGCTGAG/-|frameshift_variant;TP53|p.V173Afs*72|1|0.09|ENSG00000141510|chr17:7675088-7675094|CGCCTCA/-|frameshift_variant;TP53|p.D184Afs*62|1|0.68|ENSG00000141510|chr17:7675058-7675061|CTAT/-|frameshift_variant;TP53|p.V203Gfs*44|1|0.68|ENSG00000141510|chr17:7674923-7674923|A/-|frameshift_variant;TP53|p.N200Ifs*47|1|0.17|ENSG00000141510|chr17:7674932-7674932|T/-|frameshift_variant;TP53|p.L206Wfs*41|1|0.36|ENSG00000141510|chr17:7674914-7674914|A/-|frameshift_variant;TP53|p.H214Qfs*33|1|0.55|ENSG00000141510|chr17:7674889-7674889|A/-|frameshift_variant;TP53|p.H178Tfs*69|1|0.53|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.G199Efs*48|1|0.77|ENSG00000141510|chr17:7674937-7674937|T/-|frameshift_variant;TP53|p.C176Afs*71|1|0.09|ENSG00000141510|chr17:7675086-7675086|A/-|frameshift_variant;TP53|p.I195Lfs*53|1|0.3|ENSG00000141510|chr17:7674949-7674950|-/AG|frameshift_variant;TP53|p.H178Pfs*70|1|0.48|ENSG00000141510|chr17:7675079-7675080|-/GG|frameshift_variant	TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant	TP53|p.V197Ifs*42|1|0.6|ENSG00000141510|chr17:7674919-7674943|CTCCACACGCAAATTTCCTTCCACT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.304621	1160.59469	1.1981	0.00069644	-9.4499	-0.0054933	-8.2518	-0.0047968	581.2993685527725	30.486	0.12064	30.48	30.456	30.577	-0.0057545	1032	94	1.0010062	0.056616962	0.99948686	405.70224		22.946564	0.0086827	0.00062257	0.00015405	NaN	0.27539	169	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11370			30740	13721	17661	18157							0.02081544575889893
WCSSNNDEPD	10	Unmodified	_WCSSNNDEPD_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.47334874793324	3	389.473349	1165.39822	2.2063	0.0008593	-8.4966	-0.0033092	-6.2903	-0.0024499	389.8048293071594	22.018	0.048082	22.004	21.98	22.028	-0.013895	1485	31	0.72280174	0.018575132	0.7212823	439.39554	0	11.291962						38	3	2	NaN	NaN	NaN	0.77024	1	14782	14782		1.2289	0.59722	1	2541.8	+		30741	11047	17662	18158	24562	24562					-0.17786633574837651
WDDDEGGERF	10	Unmodified	_WDDDEGGERF_					0	0	0			REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.1633915731666	3	409.163392	1224.46835	2.3653	0.00096779	-9.8669	-0.0040372	-7.5016	-0.0030694	409.4936184198233	19.298	0.048082	19.284	19.284	19.332	-0.014141	1539	43	0.68933374	0.026050448	0.6878143	418.814	0	15.827301						40	3	2	NaN	NaN	NaN	0.77421	1	16390	16390		0.71611	0	1	2415.1	+		30742	10596	17663	18159	24563	24563					-0.1349101191472073
WDKYECPPA	9	Unmodified	_WDKYECPPA_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7420421134001	2	554.742042	1107.46953	1.6199	0.00089861	6.0758	0.0033705	7.6957	0.0042691	554.74523658424	25.226	0.14475	25.214	25.165	25.31	-0.012011	1242	67	0.87260187	0.040521502	0.8710824	353.85974	0	16.432373						200	7	2	NaN	NaN	NaN	0.47587	1	12784	12784		10.605	0.85897	1	29476	+		30743	11369	17664	18160	24564	24564					-0.07990469079504692
WDPYGPWEG	9	Unmodified	_WDPYGPWEG_					0	0	0		nc|ENSG00000173157|P59510-2|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1106.4577868775998	1	1106.45779	1105.45051	-0.218	-0.0002412	4.7187	0.005221	4.5007	0.0049798	1106.4626197296143	47.395	0.19166	47.402	47.282	47.474	0.007412	177	46	1.5139546	0.026585102	1.5124352	306.98172	0	5.3905945						130	9	2	NaN	NaN	NaN	0.56671	1	12714	12714		6.8632	1.3974	1	10066			30744	7984	17665	18161	24565	24565					-0.09799682378911712
WDRYEEFV	8	Unmodified	_WDRYEEFV_					0	0	0		ENST00000442740.1_2_3:48475374-48481489:-|nuORF;ENSG00000164051|ENST00000395694|CCDC51	ENST00000442740.1_2_3:48475374-48481489:-|nuORF	ENST00000442740.1_2_3:48475374-48481489:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.84170122093326	3	381.841701	1142.50327	1.7362	0.00066295	6.314	0.002411	8.0502	0.0030739	381.8448303931054	23.441	0.096502	23.441	23.393	23.489	0	1488	55	0.7209441	0.03344977	0.7209441	438.36874	0	20.33908						92	5	2	NaN	NaN	NaN	0.83211	1	14537	14537		3.2116	0	1	8941.7			30745	4286	17666	18162	24566	24566					-0.06227724316113381
WDSSTLSLY	9	Unmodified	_WDSSTLSLY_					0	0	0			REV__CON__Q1RMN8	REV__CON__Q1RMN8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	357.83795675816674	3	357.837957	1070.49204	1.7601	0.00062984	-0.77657	-0.00027788	0.98357	0.00035196	357.83782847675235	19.564	0.096004	19.564	19.54	19.636	0	1494	34	0.7172283	0.020438194	0.7172283	436.45837	0	12.437378						73	5	2	NaN	NaN	NaN	0.66196	1	11571	11571		1.1768	0	1	8891.8	+	+	30746	8271	17667	18163	24567	24567					-0.040385464102200785
WDYHFGKEM	9	Unmodified	_WDYHFGKEM_					0	0	0		ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.7607661828001	2	606.760766	1211.50698	1.6009	0.00097134	-4.6378	-0.002814	-3.0369	-0.0018427	606.7593797737302	25.491	0.2171	25.491	25.395	25.612	0	1209	55	0.892844	0.033093095	0.892844	361.686	0	13.405823						155	10	2	NaN	NaN	NaN	0.58159	1	16752	16752		6.2502	0	1	19005			30747	6	17668	18164	24568	24568					-0.09031377813880681
WDYHFGKEM	9	Unmodified						0	0	0		ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	ACTR6|p.L78H|1|0.28|ENSG00000075089|chr12:100205722-100205722|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	606.760766	1211.50698	1.4399	0.00087369	-3.962	-0.002404	-2.5221	-0.0015303	606.7585141189552	25.491	0.19301	25.479	25.455	25.648	-0.012011	1209	52	0.892844	0.031259656	0.8913246	361.686		12.663116	-0.0061477	0.00038433	-0.00075972	NaN	6.2502	168	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22323			30748	6	17668	18164							-0.09031377813880681
WEAQARVSW	9	Unmodified	_WEAQARVSW_					0	0	0		ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.5534185973	1	1132.55342	1131.54614	2.6514	0.0030029	-10.912	-0.012358	-8.2604	-0.0093554	1132.5407486603299	22.573	0.16887	22.573	22.549	22.718	0	72	235	1.5758814	0.13814759	1.5758814	319.44763	0	28.003967						733	8	5	NaN	NaN	NaN	0.089764	1	14137	14137		37.302	3.877	1	176250			30749	6477	17669	18165	24569	24569					-0.014369094680205308
WEAQARVSW	9	Unmodified	_WEAQARVSW_					0	0	0		ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.78034753195	2	566.780348	1131.54614	1.1399	0.00064609	-10.779	-0.0061094	-9.6391	-0.0054633	567.2760038772606	56.107	0.048058	56.106	56.082	56.13	-0.00056458	1230	31	0.8799654	0.018400967	0.878446	356.75256	0	7.4600525						31	3	2	NaN	NaN	NaN	0.44082	1	13682	13682		12.049	0.30984	1	1471.4			30750	6477	17669	18165	24570	24570					-0.014369094680205308
WEAQARVSW	9	Unmodified	_WEAQARVSW_					0	0	0		ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.78034753195	2	566.780348	1131.54614	0.99861	0.00056599	-5.4452	-0.0030862	-4.4466	-0.0025202	566.7778688573611	28.242	0.09656	28.233	28.161	28.257	-0.0089779	1221	76	0.885486	0.0460099	0.88396657	358.9907	0	18.653168						142	5	3	NaN	NaN	NaN	0.53317	1	13694	13694		8.2448	0	1	14422			30751	6477	17669	18165	24571	24571					-0.014369094680205308
WEAQARVSW	9	Unmodified						0	0	0		ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	566.780348	1131.54614	1.9421	0.0011007	-7.9592	-0.0045111	-6.0171	-0.0034104	567.2782269498122	27.953	0.19304	27.953	27.905	28.098	0	1224	61	0.883646	0.03680587	0.883646	358.24472		14.921722	-0.13995	-0.00093529	-0.00016028	NaN	8.2448	169	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26186			30752	6477	17669	18165							-0.014369094680205308
WEAQARVSW	9	Unmodified						0	0	0		ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	ENST00000319283.7_1_3:39149466-39149664:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1132.55342	1131.54614	1.2903	0.0014614	-9.7632	-0.011057	-8.4729	-0.009596	1132.5420928368785	22.621	0.2652	22.607	22.559	22.824	-0.01354	72	247	1.5758814	0.14526296	1.5743619	319.44763		29.44632	0.017074	0.00055689	-0.00075972	NaN	37.302	723	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133010			30753	6477	17669	18165							-0.014369094680205308
WEEKSWELQ	9	Unmodified	_WEEKSWELQ_					0	0	0		ENST00000398117.1_1_18:60795154-60795277:-|nuORF	ENST00000398117.1_1_18:60795154-60795277:-|nuORF	ENST00000398117.1_1_18:60795154-60795277:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.79057786725	2	617.790578	1233.5666	1.5928	0.00098399	0.69967	0.00043225	2.2924	0.0014162	617.7914508645512	26.022	0.14483	26.022	25.974	26.119	0	1206	55	0.894683	0.033093095	0.894683	362.35794	0	13.403137						160	7	3	NaN	NaN	NaN	0.47587	1	17361	17361		10.605	0.24481	1	15656			30754	6813	17670	18166	24572	24572					-0.0408378359886683
WEENHTEKFL	10	Unmodified	_WEENHTEKFL_					0	0	0		ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	444.8788150087333	3	444.878815	1331.61462	0.88953	0.00039573	-10.336	-0.0045983	-9.4466	-0.0042026	445.20930401968167	35.022	0.096539	35.022	34.998	35.094	-4.5776E-05	1578	49	0.6651217	0.029810846	0.66360223	403.74155	0	18.095734						155	5	4	NaN	NaN	NaN	0.77585	1	18418	18418		1.5256	0.29665	1	11725			30755	5382	17671	18167	24573	24573					-0.03792709678828032
WEFFKKRA	8	Unmodified	_WEFFKKRA_					0	0	0			REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	REV__tr|U7SUS5|U7SUS5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00987PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.3060011764501	2	556.306001	1110.59745	1.7401	0.00096801	-0.3805	-0.00021167	1.3596	0.00075634	556.3061091178678	54.884	0.024006	54.884	54.884	54.908	0	1227	28	0.88180584	0.016563535	0.88180584	357.5798	0	6.7166443						29	2	2	NaN	NaN	NaN	0.84692	1	13314	13314		1.4396	0	1	2185.2	+		30756	13522	17672	18168	24574	24574					0.04657459296709021
WEFTVVQF	8	Unmodified	_WEFTVVQF_					0	0	0			REV__nc|ENSG00000066230|P48764-2|SLC9A3	REV__nc|ENSG00000066230|P48764-2|SLC9A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2634676597501	2	528.263468	1054.51238	1.2051	0.00063662	1.6877	0.00089157	2.8929	0.0015282	528.2635465208949	32.345	0.12069	32.345	32.297	32.418	0	1290	49	0.84311575	0.02951163	0.84311575	342.11343	0	11.975037						105	6	2	NaN	NaN	NaN	0.80692	1	10833	10833		8.2903	0.74991	1	9380.3	+		30757	8543	17673	18169	24575	24575					-0.012693309597580082
WELELVTI	8	Unmodified	_WELELVTI_					0	0	0			REV__nc|ENSG00000170266|P16278-2|GLB1	REV__nc|ENSG00000170266|P16278-2|GLB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1002.5506246303001	1	1002.55062	1001.54335	1.5934	0.0015975	3.3223	0.0033308	4.9158	0.0049283	1002.5539677779188	32.514	0.12063	32.514	32.466	32.587	0	171	97	1.5174994	0.056747913	1.5174994	308.094	0	11.521362						249	6	2	NaN	NaN	NaN	0.40747	1	8664	8664		36.036	4.4753	1	46226	+		30758	10576	17674	18170	24576	24576					0.04263822354482727
WELLVLLL	8	Unmodified	_WELLVLLL_					0	0	0		ENST00000319190.9_1_2:47168484-47168661:+|nuORF	ENST00000319190.9_1_2:47168484-47168661:+|nuORF	ENST00000319190.9_1_2:47168484-47168661:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.6284810208002	1	998.628481	997.621205	1.1845	0.0011829	2.1575	0.0021546	3.342	0.0033374	998.6302629851929	40.585	0.072117	40.585	40.537	40.609	0	141	61	1.5352125	0.035399795	1.5352125	311.70688	0	7.1875						94	4	2	NaN	NaN	NaN	0.65075	1	8501	8501		22.126	0	1	6457.6			30759	6476	17675	18171	24577	24577					0.1222988001052272
WENNKEAL	8	Unmodified	_WENNKEAL_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4843359790999	1	1003.48434	1002.47706	1.5901	0.0015956	-7.8646	-0.007892	-6.2745	-0.0062964	1003.4759170077258	24.864	0.072361	24.851	24.827	24.9	-0.012392	237	79	1.4784646	0.04618597	1.4769452	300.1651	0	9.376892						128	4	2	NaN	NaN	NaN	0.69898	1	8510	8510		19.118	0	1	12764			30760	1610	17676	18172	24578	24578					-0.024079934875885556
WENQNPAVEET	11	Unmodified	_WENQNPAVEET_					0	0	0		ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.7913061487501	2	658.791306	1315.56806	1.0625	0.00069994	6.5088	0.004288	7.5713	0.0049879	658.7961051693518	28.097	0.14482	28.088	28.064	28.209	-0.0089798	1152	76	0.92775106	0.04585117	0.9262317	375.4916	0	18.557495						266	7	3	NaN	NaN	NaN	0.6875	1	18196	18196		8.2775	3.0887	1	22944			30761	6032	17677	18173	24579	24579					-0.07710194300739204
WEPNKVSSNS	10	Unmodified	_WEPNKVSSNS_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2725522896001	2	574.272552	1146.53055	1.6139	0.00092679	-7.9133	-0.0045444	-6.2995	-0.0036176	574.2680326330836	23.32	0.16889	23.307	23.283	23.451	-0.013296	1161	97	0.9222442	0.058806837	0.92072475	373.83426	0	23.837494						238	8	2	NaN	NaN	NaN	0.5917	1	14189	14189		15.463	1.0377	1	51594			30762	2162	17678	18174	24580	24580					-0.03685240775712373
WEPRQNLKC	9	Unmodified	_WEPRQNLKC_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.2953074919001	2	587.295307	1172.57606	1.3778	0.00080918	-11.349	-0.0066654	-9.9714	-0.0058562	587.790563257975	24.381	0.21714	24.381	24.285	24.502	0	1179	55	0.9112251	0.03306806	0.9112251	369.2701	0	13.400696						240	10	4	NaN	NaN	NaN	0.44082	1	15568	15568		12.049	0.30984	1	28064			30763	1353	17679	18175	24581	24581					-0.0033229379432668793
WEPVQESS	8	Unmodified	_WEPVQESS_					0	0	0		nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12	nc|ENSG00000159788|O14924-2|RGS12	nc|ENSG00000159788|O14924-2|RGS12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	961.4261523982001	1	961.426152	960.418876	1.6201	0.0015576	-2.6762	-0.002573	-1.0561	-0.0010153	961.4238154867415	54.572	0.19257	54.572	54.476	54.668	0	309	64	1.435777	0.037397385	1.435777	291.67154	0	7.5970764						219	9	2	NaN	NaN	NaN	0.8439	1	7340	7340		3.1533	0.36816	1	44430			30764	4040	17680	18176	24582	24582					-0.06291675132843011
WEQGFSQSF	9	Unmodified	_WEQGFSQSF_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1115.4792506012	1	1115.47925	1114.47197	1.8146	0.0020242	1.9377	0.0021615	3.7524	0.0041857	1116.4867791237411	24.767	0.096537	24.767	24.743	24.84	0	138	61	1.5369828	0.035399795	1.5369828	311.62	0	7.177246						107	5	2	NaN	NaN	NaN	0.10945	1	13453	13453		34.454	11.336	1	9153.2			30765	4590	17681	18177	24583	24583					-0.08068297350178
WESDQPDNPS	10	Unmodified	_WESDQPDNPS_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7359996078001	2	587.736	1173.45745	1.581	0.0009292	-8.435	-0.0049575	-6.854	-0.0040283	587.730357838911	22.235	0.072395	22.222	22.197	22.27	-0.013731	1218	31	0.8873258	0.018399	0.8858064	359.58188	0	7.456024						50	4	2	NaN	NaN	NaN	0.77024	1	15030	15030		2.8895	0.10428	1	4082.3			30766	399	17682	18178	24584	24584					-0.12234414288991502
WESHEQGCA	9	Unmodified	_WESHEQGCA_					0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.70344826915	2	523.703448	1045.39234	2.2758	0.0011919	6.5248	0.0034171	8.8007	0.0046089	524.2076761321885	26.07	0.096535	26.059	26.035	26.131	-0.011137	1494	34	0.7172283	0.020438194	0.71570885	291.06442	0	8.294189						86	5	3	NaN	NaN	NaN	0.60736	1	10215	10215		5.1889	0.27914	1	5779.6	+		30767	10292	17683	18179	24585	24585					-0.12853687295842064
WESHEQGCA	9	Unmodified						0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	523.703448	1045.39234	1.9091	0.00099982	7.3999	0.0038753	9.309	0.0048752	524.2085347756904	26.07	0.072418	26.07	26.046	26.119	0	1494	31	0.7172283	0.018581212	0.7172283	291.06442		7.5405884	0.005674	0.0004562	0.00075972	NaN	5.1889	69	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4729.8	+		30768	10292	17683	18179							-0.12853687295842064
WESHEQGCA	9	Unmodified						0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	523.703448	1045.39234	2.2758	0.0011919	6.5248	0.0034171	8.8007	0.0046089	524.2076761321885	26.07	0.096535	26.059	26.035	26.131	-0.011137	1494	34	0.7172283	0.020438194	0.71570885	291.06442		8.294189	-0.005674	-0.00046034	-0.00075972	NaN	5.1889	86	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5779.6	+		30769	10292	17683	18179							-0.12853687295842064
WFATSFFW	8	Unmodified	_WFATSFFW_					0	0	0		ENST00000263708.6_1_2:120567469-120620160:+|nuORF	ENST00000263708.6_1_2:120567469-120620160:+|nuORF	ENST00000263708.6_1_2:120567469-120620160:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.50436080450004	3	364.504361	1090.49125	1.7905	0.00065264	-7.3057	-0.002663	-5.5152	-0.0020103	364.50156005815177	19.106	0.1682	19.092	19.02	19.188	-0.014141	1509	37	0.70793515	0.022309542	0.7064157	430.70303	0	13.572968						126	8	2	NaN	NaN	NaN	0.75682	1	12101	12101		15.175	8.7455	1	17100			30770	6320	17684	18180	24586	24586					-0.05037296268619684
WFCYASSPL	9	Unmodified	_WFCYASSPL_					0	0	0			REV__ENST00000419046.1_1_3:50388791-50390684:+|nuORF	REV__ENST00000419046.1_1_3:50388791-50390684:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.24167797265	2	537.241678	1072.4688	2.1314	0.0011451	-2.2158	-0.0011904	-0.08441	-4.5348E-05	537.240697217586	17.597	0.071926	17.597	17.573	17.645	0	1275	37	0.85233563	0.022121787	0.85233563	345.77997	0	8.974457						82	4	3	NaN	NaN	NaN	0.56671	1	11651	11651		6.8632	0	1	6683.9	+		30771	12098	17685	18181	24587	24587					-0.06453263728553793
WFCYASSPL	9	Unmodified						0	0	0			REV__ENST00000419046.1_1_3:50388791-50390684:+|nuORF	REV__ENST00000419046.1_1_3:50388791-50390684:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	537.241678	1072.4688	2.1314	0.0011451	-2.2158	-0.0011904	-0.08441	-4.5348E-05	537.240697217586	17.597	0.071926	17.597	17.573	17.645	0	1275	37	0.85233563	0.022121787	0.85233563	345.77997		8.974457	-0.015531	-0.00084989	0.0016815	NaN	6.8632	82	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6683.9	+		30772	12098	17685	18181							-0.06453263728553793
WFFLIFTLLL	10	Unmodified	_WFFLIFTLLL_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	656.8888353488502	2	656.888835	1311.76312	0.93142	0.00061184	-0.9133	-0.00059994	0.018116	1.19E-05	656.8885242284775	30.848	0.12069	30.842	30.794	30.915	-0.0057545	1050	73	0.9900381	0.043910444	0.9885187	400.71335	0	17.772583						169	6	3	NaN	NaN	NaN	0.62764	1	18145	18145		13.003	1.264	1	15493	+		30773	9072	17686	18182	24588	24588					0.11970673032874402
WFHDRFCQ	8	Unmodified	_WFHDRFCQ_					0	0	0		ENST00000488516.1_1_2:170393692-170394610:-|nuORF;ENSG00000138399|ENST00000453153|FASTKD1	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	ENST00000488516.1_1_2:170393692-170394610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.74799315855	2	569.747993	1137.48143	1.8078	0.00103	-2.5732	-0.0014661	-0.76541	-0.00043609	569.7465687644119	22.236	0.16886	22.236	22.163	22.332	0	1194	61	0.902037	0.036778092	0.902037	365.67776	0	14.909485						160	8	3	NaN	NaN	NaN	0.80692	1	14357	14357		8.2903	3.1014	1	13096			30774	3155	17687	18183	24589	24589					-0.08180807545659263
WFIGKEKE	8	Unmodified	_WFIGKEKE_					0	0	0		nc|ENSG00000109881|Q96HJ3-2|CCDC34;ENSG00000109881|ENST00000328697|CCDC34	nc|ENSG00000109881|Q96HJ3-2|CCDC34	nc|ENSG00000109881|Q96HJ3-2|CCDC34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.7767422105001	2	518.776742	1035.53893	1.4067	0.00072974	-0.12244	-6.3517E-05	1.2842	0.00066622	518.7760366136037	24.574	0.096443	24.562	24.514	24.61	-0.012392	1290	43	0.84311575	0.025819898	0.8415963	342.19424	0	10.479492						86	5	2	NaN	NaN	NaN	0.69898	1	9808	9808		19.118	3.9429	1	7375.9			30775	1738	17688	18184	24590	24590					0.022583579315551106
WFIGKEKE	8	Unmodified						0	0	0		nc|ENSG00000109881|Q96HJ3-2|CCDC34;ENSG00000109881|ENST00000328697|CCDC34	nc|ENSG00000109881|Q96HJ3-2|CCDC34	nc|ENSG00000109881|Q96HJ3-2|CCDC34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	518.776742	1035.53893	1.4147	0.00073391	-1.4687	-0.00076191	-0.053965	-2.7996E-05	518.7755037373668	24.55	0.14463	24.55	24.526	24.671	0	1290	52	0.84311575	0.031347692	0.84311575	342.19424		12.723022	-0.0057949	-0.00062761	0.00075972	NaN	19.118	94	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9376.6			30776	1738	17688	18184							0.022583579315551106
WFIIFWSA	8	Unmodified	_WFIIFWSA_					0	0	0			REV__ENSG00000174667|ENST00000641669|OR7D4	REV__ENSG00000174667|ENST00000641669|OR7D4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.2789207587001	2	535.278921	1068.54329	1.0396	0.00055646	8.0393	0.0043033	9.0789	0.0048597	535.7837342670823	38.035	0.072063	38.035	38.011	38.083	0	1242	49	0.87260187	0.029470205	0.87260187	354.01813	0	11.956177						91	4	2	NaN	NaN	NaN	0.79379	1	11499	11499		10.052	1.8067	1	7189.6	+		30777	10704	17689	18185	24591	24591					0.011758671451389091
WFIIFWSA	8	Unmodified						0	0	0			REV__ENSG00000174667|ENST00000641669|OR7D4	REV__ENSG00000174667|ENST00000641669|OR7D4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.278921	1068.54329	1.0396	0.00055646	8.0393	0.0043033	9.0789	0.0048597	535.7837342670823	38.035	0.072063	38.035	38.011	38.083	0	1242	49	0.87260187	0.029470205	0.87260187	354.01813		11.956177	0	0	0	NaN	10.052	91	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7189.6	+		30778	10704	17689	18185							0.011758671451389091
WFKIQRFRY	9	Unmodified	_WFKIQRFRY_					0	0	0		tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3722067547001	2	672.372207	1342.72986	0.76034	0.00051123	7.8968	0.0053096	8.6571	0.0058208	672.3767428674296	40.464	0.096184	40.464	40.44	40.537	0	1185	28	0.90755045	0.0165385	0.90755045	367.2385	0	6.6922607						55	5	2	NaN	NaN	NaN	0.67989	1	19463	19463		0.92586	0.40982	1	4527.3			30779	13781	17690	18186	24592	24592					0.07220484033496177
WFKIQRFRY	9	Unmodified						0	0	0		tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	tr|U7SNA2|U7SNA2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01871PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.372207	1342.72986	1.2491	0.00083985	7.7444	0.0052071	8.9935	0.006047	672.8793408435563	40.102	0.072208	40.108	40.06	40.132	0.0060463	1182	34	0.9093879	0.020211518	0.90786844	367.982		8.178558	-0.17827	-0.00010212	0.00015899	NaN	0.92586	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5199.7			30780	13781	17690	18186							0.07220484033496177
WFLKNHMKAH	10	Unmodified	_WFLKNHMKAH_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant;ENSG00000101493|ENST00000443185|ZNF516	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.3425920355	2	656.342592	1310.67063	1.5091	0.00099048	-7.8654	-0.0051624	-6.3563	-0.0041719	656.3372524858271	17.261	0.11985	17.261	17.213	17.333	0	1071	37	0.977233	0.021962345	0.977233	395.534	0	8.889252						146	6	3	NaN	NaN	NaN	0.47025	1	18962	18962		11.17	0	1	15310			30781	1335	17691	18187	24593	24593					0.02772264747659392
WFLKNHMKAH	10	Unmodified	_WFLKNHMKAH_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant;ENSG00000101493|ENST00000443185|ZNF516	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.89748684586664	3	437.897487	1310.67063	1.6386	0.00071756	-5.8668	-0.002569	-4.2281	-0.0018515	437.8945779488313	17.882	0.11991	17.868	17.772	17.892	-0.013786	1419	31	0.76361835	0.018530905	0.7620989	463.6068	0	11.250427						113	6	3	NaN	NaN	NaN	0.71345	1	18122	18122		7.1304	0	1	10617			30782	1335	17691	18187	24594	24594					0.02772264747659392
WFLRSEIAQ	9	Unmodified	_WFLRSEIAQ_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.3061981417	2	575.306198	1148.59784	1.9906	0.0011452	-7.6388	-0.0043946	-5.6482	-0.0032494	575.3025184230094	25.998	0.096508	25.987	25.89	25.987	-0.011137	1188	40	0.90571284	0.023886383	0.9041934	367.12537	0	9.68222						95	5	2	NaN	NaN	NaN	0.56671	1	14262	14262		6.8632	0.613	1	14002			30783	1567	17692	18188	24595	24595					0.029488342258673583
WFLRSEIAQ	9	Unmodified						0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.306198	1148.59784	2.0413	0.0011744	-9.7781	-0.0056254	-7.7368	-0.004451	575.3004153261245	25.974	0.12065	25.974	25.877	25.998	0	1188	46	0.90571284	0.027564168	0.90571284	367.12537		11.172974	-0.0063856	-0.0012506	0.00075972	NaN	6.8632	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17823			30784	1567	17692	18188							0.029488342258673583
WFMKLIIV	8	Unmodified	_WFMKLIIV_					0	0	0			REV__ENSG00000115602|ENST00000233954|IL1RL1	REV__ENSG00000115602|ENST00000233954|IL1RL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.3144489852501	2	525.314449	1048.61435	1.1211	0.0005889	-10.759	-0.005652	-9.6382	-0.0050631	525.3083438762206	27.856	0.048311	27.846	27.846	27.895	-0.009552	1242	64	0.87260187	0.03866917	0.8710824	354.10382	0	15.692017						87	3	2	NaN	NaN	NaN	0.76633	1	10364	10364		13.737	2.1886	1	7608.5	+		30785	9197	17693	18189	24596	24596					0.09198243858304522
WFREEEVQ	8	Unmodified	_WFREEEVQ_					0	0	0		ENSG00000107201|ENST00000379883|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF	ENSG00000107201|ENST00000379883|RIGI	ENSG00000107201|ENST00000379883|RIGI	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.76436311675	2	561.764363	1121.51417	2.2658	0.0012729	-11.489	-0.0064543	-9.2235	-0.0051814	561.7576741267699	18.7	0.14386	18.7	18.628	18.772	0	1221	55	0.885486	0.03312534	0.885486	359.02936	0	13.431						184	7	3	NaN	NaN	NaN	0.72013	1	13732	13732		17.799	1.2148	1	27374			30786	1627	17694	18190	24597	24597					-0.04172321941814516
WFREEEVQ	8	Unmodified						0	0	0		ENSG00000107201|ENST00000379883|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF	ENSG00000107201|ENST00000379883|RIGI	ENSG00000107201|ENST00000379883|RIGI	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.764363	1121.51417	1.7777	0.00099864	-10.428	-0.0058579	-8.65	-0.0048593	562.260577164663	18.722	0.14398	18.708	18.564	18.708	-0.014059	1218	55	0.8873258	0.03312534	0.8858064	359.7753		13.431	0.0036271	0.00081155	0.00016018	NaN	17.799	150	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17760			30787	1627	17694	18190							-0.04172321941814516
WFSVASLI	8	Unmodified	_WFSVASLI_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	461.75527848690007	2	461.755278	921.496004	1.1886	0.00054884	-5.7999	-0.0026781	-4.6113	-0.0021293	461.7522462963165	18.722	0.14396	18.708	18.66	18.804	-0.014059	1347	70	0.8080346	0.042535603	0.8065152	328.48785	0	17.2919						152	7	3	NaN	NaN	NaN	0.50567	1	6317	6317		30.791	4.0596	1	17568			30788	2096	17695	18191	24598	24598					0.03211587874147881
WFVDYILLGSL	11	Unmodified	_WFVDYILLGSL_					0	0	0			REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	663.3606390154001	2	663.360639	1324.70673	0.85634	0.00056806	4.3362	0.0028764	5.1925	0.0034445	663.3649100071892	39.983	0.14449	39.983	39.863	40.008	0	1167	58	0.91857195	0.034895778	0.91857195	371.74985	0	14.122467						274	7	3	NaN	NaN	NaN	0.76488	1	19172	19172		2.8895	0	1	37655	+		30789	10158	17696	18192	24599	24599					0.057360004055226455
WFVDYILLGSL	11	Unmodified						0	0	0			REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	663.360639	1324.70673	0.85634	0.00056806	4.3362	0.0028764	5.1925	0.0034445	663.3649100071892	39.983	0.14449	39.983	39.863	40.008	0	1167	58	0.91857195	0.034895778	0.91857195	371.74985		14.122467	0.0099975	0.00075424	-0.00015839	NaN	2.8895	274	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37655	+		30790	10158	17696	18192							0.057360004055226455
WFVDYILLGSL	11	Unmodified						0	0	0			REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	REV__ENST00000392495.7_1_12:121202804-121206971:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	663.360639	1324.70673	1.6031	0.0010635	3.1224	0.0020713	4.7255	0.0031347	663.3632185620212	39.957	0.21703	39.963	39.771	39.988	0.0060501	1164	58	0.9204082	0.034892023	0.91888875	372.49298		14.120941	-0.0099975	-0.00085615	0.00015839	NaN	2.8895	355	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41456	+		30791	10158	17696	18192							0.057360004055226455
WFWPGIVEKEE	11	Unmodified	_WFWPGIVEKEE_					0	0	0			REV__GPRASP1|p.E547K|1|0.21|ENSG00000198932|chrX:102655552-102655552|G/A|missense_variant	REV__GPRASP1|p.E547K|1|0.21|ENSG00000198932|chrX:102655552-102655552|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.90296056259996	3	473.902961	1418.68705	1.6797	0.00079599	-10.458	-0.0049563	-8.7788	-0.0041603	473.8979125449027	18.218	0.07196	18.204	18.18	18.252	-0.01395	1443	34	0.7487872	0.02040279	0.7472678	454.24185	0	12.377045						60	4	2	NaN	NaN	NaN	0.76594	1	19249	19249		2.7042	0.46523	1	4944.2	+		30792	13003	17697	18193	24600	24600					-0.005543756052475146
WGAGLGGK	8	Unmodified	_WGAGLGGK_					0	0	0			REV__ENST00000166139.8_1_19:681766-681907:+|nuORF	REV__ENST00000166139.8_1_19:681766-681907:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	745.3991497867001	1	745.39915	744.391873	1.5364	0.0011452	-1.591	-0.0011859	-0.054654	-4.0739E-05	745.3982446393434	27.977	0.072405	27.968	27.943	28.016	-0.0089798	546	52	1.294491	0.030536413	1.2929716	264.04663	0	6.2287292						98	4	2	NaN	NaN	NaN	0.84207	1	3894	3894		3.5732	0.78803	1	6426.6	+		30793	11448	17698	18194	24601	24601					0.009453058372855594
WGAIIGAVPGF	11	Unmodified	_WGAIIGAVPGF_					0	0	0			REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	REV__tr|U7STF7|U7STF7_FUSNUDUF1576domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01332PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.3003844823	2	544.300384	1086.58622	1.3008	0.000708	-10.268	-0.005589	-8.9674	-0.004881	544.2948624104168	27.977	0.048246	27.968	27.919	27.968	-0.0089798	1242	31	0.87260187	0.018412888	0.8710824	353.9434	0	7.468628						55	3	2	NaN	NaN	NaN	0.65204	1	11936	11936		10.605	1.4818	1	7335.5	+		30794	13492	17699	18195	24602	24602					0.04638637202560858
WGCWGATL	8	Unmodified	_WGCWGATL_					0	0	0		ENST00000573745.1_1_17:7166273-7166435:-|nuORF	ENST00000573745.1_1_17:7166273-7166435:-|nuORF	ENST00000573745.1_1_17:7166273-7166435:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	893.3974352272002	1	893.397435	892.390159	1.4991	0.0013393	4.9474	0.00442	6.4465	0.0057593	893.401727935729	26.577	0.12066	26.566	26.518	26.639	-0.010645	411	55	1.3751161	0.032179594	1.3735967	279.64948	0	6.544159						109	6	2	NaN	NaN	NaN	0.79379	1	5835	5835		10.052	0.92837	1	6748.9			30795	7652	17700	18196	24603	24603					-0.0603407124297064
WGFLTRPWI	9	Unmodified	_WGFLTRPWI_					0	0	0			REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|1|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|8	REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|1|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.3216512406501	2	588.321651	1174.62875	2.133	0.0012549	-4.142	-0.0024368	-2.009	-0.001182	588.3188448791065	25.684	0.072386	25.684	25.66	25.732	0	1374	31	0.791392	0.018500745	0.791392	320.70175	0	7.497223						65	4	2	NaN	NaN	NaN	0.68748	1	15643	15643		0.27539	0	1	5477.2	+		30796	8230	17701	18197	24604	24604					0.048420323307937
WGFLTRPWI	9	Unmodified						0	0	0			REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|1|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|8	REV__chr4:99420793-99426577|128|12.3|0.16|6.26|-|1|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	588.321651	1174.62875	2.133	0.0012549	-4.142	-0.0024368	-2.009	-0.001182	588.3188448791065	25.684	0.072386	25.684	25.66	25.732	0	1374	31	0.791392	0.018500745	0.791392	320.70175		7.497223	0	0	0	NaN	0.27539	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5477.2	+		30797	8230	17701	18197							0.048420323307937
WGGGEAAA	8	Unmodified	_WGGGEAAA_					0	0	0			REV__ENSG00000164040|ENST00000296425|PGRMC2	REV__ENSG00000164040|ENST00000296425|PGRMC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.3154797368	1	718.31548	717.308203	-0.56594	-0.00040652	-3.0636	-0.0022006	-3.6295	-0.0026072	718.3158774393638	55.722	0.072338	55.722	55.698	55.77	-0.00059128	510	88	1.316029	0.052030325	1.3145095	268.6231	0	10.62027						209	4	4	NaN	NaN	NaN	0.84876	1	3478	3478		0.39566	0	1	22717	+		30798	10314	17702	18198	24605	24605					-0.0617585033044179
WGGGGGAP	8	Unmodified	_WGGGGGAP_					0	0	0			REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	658.2943503642	1	658.29435	657.287074	0.89424	0.00058867	-3.3497	-0.0022051	-2.4554	-0.0016164	658.2925560851105	32.997	0.14484	32.997	32.925	33.069	0	1134	40	0.9387595	0.023842633	0.9387595	191.94383	0	4.875						84	7	2	NaN	NaN	NaN	0.84945	1	2223	2223		0	0	1	4958.9	+		30799	12948	17703	18199	24606	24606					-0.05527815639288747
WGGGGGAP	8	Unmodified	_WGGGGGAP_					0	0	0			REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.2943503642	1	658.29435	657.287074	1.1546	0.00076005	-1.6942	-0.0011153	-0.53962	-0.00035523	658.2926502340968	27.47	0.048239	27.46	27.412	27.46	-0.0095501	1113	46	0.9515937	0.02749288	0.95007426	194.56796	0	5.621338						74	3	2	NaN	NaN	NaN	0.84945	1	2142	2142		0	0	1	9096.2	+		30800	12948	17703	18199	24607	24607					-0.05527815639288747
WGGGGGAP	8	Unmodified						0	0	0			REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	REV__ENST00000597244.1_1_19:16688263-16688311:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	658.29435	657.287074	0.89424	0.00058867	-3.3497	-0.0022051	-2.4554	-0.0016164	658.2925560851105	32.997	0.14484	32.997	32.925	33.069	0	1134	40	0.9387595	0.023842633	0.9387595	191.94383		4.875	0	0	0	NaN	0	84	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4958.9	+		30801	12948	17703	18199							-0.05527815639288747
WGGVAFGK	8	Unmodified	_WGGVAFGK_					0	0	0		ZBTB22|p.R553Efs*160|1|0.4|ENSG00000236104|chr6:33315260-33315260|G/-|frameshift_variant	ZBTB22|p.R553Efs*160|1|0.4|ENSG00000236104|chr6:33315260-33315260|G/-|frameshift_variant	ZBTB22|p.R553Efs*160|1|0.4|ENSG00000236104|chr6:33315260-33315260|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4304499151001	1	821.43045	820.423173	1.8041	0.001482	1.2924	0.0010616	3.0965	0.0025436	821.4313404840711	26.336	0.12064	26.324	26.276	26.397	-0.011137	474	55	1.3375392	0.032241344	1.3360198	272.36972	0	6.56546						123	6	2	NaN	NaN	NaN	0.8439	1	4916	4916		3.1533	0	1	9757.1			30802	14027	17704	18200	24608	24608					0.005778788713769245
WGGWHHGRE	9	Unmodified	_WGGWHHGRE_					0	0	0		ENST00000231504.5_1_5:133541817-133561610:-|nuORF	ENST00000231504.5_1_5:133541817-133561610:-|nuORF	ENST00000231504.5_1_5:133541817-133561610:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2548312732	2	561.254831	1120.49511	1.1652	0.000654	-2.9659	-0.0016646	-1.8006	-0.0010106	561.7549951752138	30.922	0.16891	30.922	30.849	31.018	0	1251	88	0.8670771	0.053400338	0.8670771	351.56912	0	21.651917						367	8	4	NaN	NaN	NaN	0.61413	1	13692	13692		4.9097	0.94122	1	50045			30803	6251	17705	18201	24609	24609					-0.060318137222111545
WGIGVRDH	8	Unmodified	_WGIGVRDH_					0	0	0			REV__ENST00000374500.9_1_6:33385885-33386053:-|nuORF	REV__ENST00000374500.9_1_6:33385885-33386053:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	939.4795253727001	1	939.479525	938.472249	0.11133	0.0001046	-1.6817	-0.00158	-1.5704	-0.0014754	939.4813441166411	53.264	0.1919	53.264	53.216	53.408	-0.00053787	213	130	1.4926696	0.07638872	1.4911501	303.32928	0	15.523132						658	9	5	NaN	NaN	NaN	0.84455	1	6648	6648		2.7852	0	1	82380	+		30804	11931	17706	18202	24610	24610					0.0005516716032616387
WGKVYWEV	8	Unmodified	_WGKVYWEV_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.77145986735	2	533.77146	1065.52837	1.0652	0.00056858	6.4856	0.0034618	7.5508	0.0040304	533.7758764153357	33.817	0.12064	33.817	33.793	33.914	0	1251	61	0.8670771	0.036845744	0.8670771	351.7894	0	14.948975						93	6	2	NaN	NaN	NaN	0.77489	1	11366	11366		12.588	1.9829	1	9835.9			30805	6042	17707	18203	24611	24611					-0.0017762472286904085
WGLAQQIFV	9	Unmodified	_WGLAQQIFV_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2925594502001	2	531.292559	1060.57057	0.65989	0.00035059	8.6165	0.0045779	9.2764	0.0049285	531.2969542958627	27.494	0.1448	27.484	27.436	27.581	-0.009552	1260	55	0.8615505	0.033157587	0.8600311	349.568	0	13.45343						224	7	5	NaN	NaN	NaN	0.61413	1	10889	10889		4.9097	0	1	45736	+		30806	9805	17708	18204	24612	24612					0.042703506855104933
WGLEEIGIF	9	Unmodified	_WGLEEIGIF_					0	0	0		tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	tr|U7SJG6|U7SJG6_FUSNURCKC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02133PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2765750350001	2	532.276575	1062.5386	2.0794	0.0011068	-10.137	-0.0053957	-8.0577	-0.0042889	532.271180986974	29.449	0.38615	29.449	29.401	29.787	0	1230	103	0.8799654	0.062583566	0.8799654	357.0313	0	25.392242						885	17	4	NaN	NaN	NaN	0.11467	1	11228	11228		33.698	5.8376	1	462420			30807	13746	17709	18205	24613	24613					0.009829382117231944
WGMSCIDDRW	10	Unmodified	_WGMSCIDDRW_					0	0	0			REV__nc|ENSG00000248099|P51460-2|INSL3	REV__nc|ENSG00000248099|P51460-2|INSL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.76298290825	2	634.762983	1267.51141	1.4092	0.00089449	6.078	0.0038581	7.4872	0.0047526	635.267004344661	36.928	0.07214	36.928	36.904	36.976	0	1149	37	0.92958635	0.022021592	0.92958635	376.3826	0	8.916382						79	4	3	NaN	NaN	NaN	0.69717	1	18169	18169		8.2448	1.9946	1	5053.9	+		30808	13246	17710	18206	24614	24614					-0.11164236662625626
WGPACLVAFRV	11	Unmodified	_WGPACLVAFRV_					0	0	0		ENST00000423485.5_1_17:38573136-38574110:-|nuORF	ENST00000423485.5_1_17:38573136-38574110:-|nuORF	ENST00000423485.5_1_17:38573136-38574110:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.82624347955	2	609.826243	1217.63793	0.99047	0.00060402	-0.1761	-0.00010739	0.81437	0.00049663	610.3259370375871	27.543	0.09654	27.543	27.519	27.615	0	1155	61	0.92591566	0.036726475	0.92591566	375.06186	0	14.876831						93	5	2	NaN	NaN	NaN	0.72685	1	16938	16938		5.6942	1.7256	1	9918.5			30809	6929	17711	18207	24615	24615					0.03782057624812296
WGPACLVAFRV	11	Unmodified						0	0	0		ENST00000423485.5_1_17:38573136-38574110:-|nuORF	ENST00000423485.5_1_17:38573136-38574110:-|nuORF	ENST00000423485.5_1_17:38573136-38574110:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	609.826243	1217.63793	0.68864	0.00041995	-4.0316	-0.0024586	-3.343	-0.0020387	610.323218653303	27.59	0.09656	27.581	27.508	27.605	-0.009552	1152	67	0.92775106	0.040390372	0.9262317	375.80536		16.360992	0.018965	-0.0025486	0.000158	NaN	5.6942	117	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11342			30810	6929	17711	18207							0.03782057624812296
WGRGGGGG	8	Unmodified	_WGRGGGGG_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.3270474761002	1	703.327047	702.319771	1.3221	0.00092987	2.9977	0.0021084	4.3198	0.0030382	703.3293182248419	35.046	0.072399	35.046	35.022	35.094	-4.5776E-05	729	58	1.184579	0.034359694	1.1830596	241.88867	0	7.016159						78	4	2	NaN	NaN	NaN	0.84876	1	3196	3196		0.39566	0	1	3886.8			30811	6127	17712	18208	24616	24616					-0.04329608516411554
WGRGPGEGG	9	Unmodified	_WGRGPGEGG_					0	0	0		ENST00000243878.8_1_16:67700286-67700655:-|nuORF	ENST00000243878.8_1_16:67700286-67700655:-|nuORF	ENST00000243878.8_1_16:67700286-67700655:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	872.4009407007003	1	872.400941	871.393664	1.0084	0.00087974	-0.81726	-0.00071298	0.19115	0.00016676	872.4001698164831	31.839	0.096529	31.839	31.815	31.911	0	1299	97	0.8375814	0.058984995	0.8375814	170.39645	0	11.999832						151	5	2	NaN	NaN	NaN	0.6907	1	5674	5674		0	0	1	14764			30812	6266	17713	18209	24617	24617					-0.04717685144737516
WGRGPGEGG	9	Unmodified						0	0	0		ENST00000243878.8_1_16:67700286-67700655:-|nuORF	ENST00000243878.8_1_16:67700286-67700655:-|nuORF	ENST00000243878.8_1_16:67700286-67700655:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	872.400941	871.393664	0.37466	0.00032685	-1.4162	-0.0012355	-1.0416	-0.00090869	872.3998695963742	31.838	0.096512	31.833	31.809	31.906	-0.0044155	1296	94	0.8394264	0.05714482	0.83790696	170.77179		11.625458	-0.0027309	-0.00017829	0.00016277	NaN	0	195	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15596			30813	6266	17713	18209							-0.04717685144737516
WGSDTCSTSSP	11	Unmodified	_WGSDTCSTSSP_					0	0	0		ENSG00000168925|ENST00000361017|CTRB1	ENSG00000168925|ENST00000361017|CTRB1	ENSG00000168925|ENST00000361017|CTRB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	376.4818442376	3	376.481844	1126.4237	1.314	0.00049469	0.53002	0.00019954	1.844	0.00069423	376.8168650648765	32.345	0.048248	32.345	32.345	32.394	0	1512	34	0.7060759	0.020451546	0.7060759	429.40112	0	12.437622						59	3	3	NaN	NaN	NaN	0.76404	1	13934	13934		3.0365	0.14703	1	3733			30814	4645	17714	18210	24618	24618					-0.134451590523895
WGSGSGFG	8	Unmodified	_WGSGSGFG_					0	0	0		ENSG00000274749|ENST00000621162|KRTAP7-1	ENSG00000274749|ENST00000621162|KRTAP7-1	ENSG00000274749|ENST00000621162|KRTAP7-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	754.3154797368002	1	754.31548	753.308203	0.65774	0.00049614	1.5134	0.0011416	2.1711	0.0016377	754.3168045790379	35.241	0.16888	35.241	35.192	35.361	0	633	118	1.2423272	0.07033908	1.2423272	253.35211	0	14.344513						371	8	3	NaN	NaN	NaN	0.84876	1	4116	4116		0.39566	0	1	31688			30815	6184	17715	18211	24619	24619					-0.07831850330410361
WGVAPGAG	8	Unmodified	_WGVAPGAG_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.3569506210001	1	714.356951	713.349674	0.75045	0.00053609	7.9524	0.0056808	8.7028	0.0062169	714.3624561068513	31.815	0.096537	31.815	31.766	31.863	0	702	40	1.2008407	0.023481488	1.2008407	245.13673	0	4.7934723						73	5	2	NaN	NaN	NaN	0.84651	1	3479	3479		1.6704	0	1	4991.3	+		30816	11234	17716	18212	24620	24620					-0.018466695710912973
WGVAPGAG	8	Unmodified						0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	714.356951	713.349674	0.75045	0.00053609	7.9524	0.0056808	8.7028	0.0062169	714.3624561068513	31.815	0.096537	31.815	31.766	31.863	0	702	40	1.2008407	0.023481488	1.2008407	245.13673		4.7934723	0.002734	0.00065398	0.0016628	NaN	1.6704	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4991.3	+		30817	11234	17716	18212							-0.018466695710912973
WGVAPGAG	8	Unmodified						0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	714.356951	713.349674	0.6777	0.00048412	5.3683	0.0038349	6.046	0.004319	714.3615464497896	31.813	0.16896	31.809	31.761	31.93	-0.0044155	705	37	1.1990347	0.021671772	1.1975152	244.76805		4.424011	-0.002734	-0.001192	-0.0016628	NaN	1.6704	102	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6593.6	+		30818	11234	17716	18212							-0.018466695710912973
WGVDERHFV	9	Unmodified	_WGVDERHFV_					0	0	0			REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.78034753195	2	572.780348	1143.54614	1.4349	0.00082186	2.9656	0.0016987	4.4005	0.0025205	572.7806589780564	32.635	0.072426	32.635	32.611	32.683	0	1242	37	0.87260187	0.022093058	0.87260187	353.7225	0	8.9557495						58	4	2	NaN	NaN	NaN	0.65696	1	14579	14579		2.8895	0.71314	1	4457.2	+		30819	12346	17717	18213	24621	24621					-0.01988909468013844
WGVDERHFV	9	Unmodified						0	0	0			REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.780348	1143.54614	1.4349	0.00082186	2.9656	0.0016987	4.4005	0.0025205	572.7806589780564	32.635	0.072426	32.635	32.611	32.683	0	1242	37	0.87260187	0.022093058	0.87260187	353.7225		8.9557495	0.026225	0.00049901	-0.0020018	NaN	2.8895	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4457.2	+		30820	12346	17717	18213							-0.01988909468013844
WGVDERHFV	9	Unmodified						0	0	0			REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	REV__ENST00000474414.5_1_1:32849477-32859770:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	572.780348	1143.54614	1.0912	0.00062501	2.1848	0.0012514	3.276	0.0018764	572.7823136887818	32.586	0.048248	32.583	32.558	32.607	-0.0031052	1233	49	0.87812483	0.029447913	0.8766054	355.96133		11.937134	-0.026225	-0.00039548	0.0020018	NaN	2.8895	50	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4779.5	+		30821	12346	17717	18213							-0.01988909468013844
WGVEGGGP	8	Unmodified	_WGVEGGGP_					0	0	0		ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	758.3467798652002	1	758.34678	757.339503	1.9026	0.0014428	-0.99842	-0.00075715	0.90413	0.00068564	758.3459775945236	19.756	0.26436	19.756	19.708	19.972	0	1383	58	0.7858409	0.03516102	0.7858409	160.24403	0	7.169815						283	12	3	NaN	NaN	NaN	0.84945	1	4181	4181		0	0	1	42463			30822	6647	17718	18214	24622	24622					-0.04887277296313641
WGVEGGGP	8	Unmodified	_WGVEGGGP_					0	0	0		ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	758.3467798652002	1	758.34678	757.339503	1.6892	0.001281	-1.4184	-0.0010756	0.27088	0.00020542	758.3460497949072	19.803	0.24069	19.789	19.717	19.958	-0.014141	1383	52	0.7858409	0.031459868	0.7843215	160.24403	0	6.4151						268	11	3	NaN	NaN	NaN	0.84945	1	4104	4104		0	0	1	41716			30823	6647	17718	18214	24623	24623					-0.04887277296313641
WGVVKGAG	8	Unmodified	_WGVVKGAG_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.4304499151002	1	773.43045	772.423173	1.4872	0.0011502	-0.54785	-0.00042373	0.93935	0.00072652	773.429929520952	20.862	0.14455	20.862	20.838	20.983	0	1308	97	0.83204526	0.05904883	0.83204526	169.6068	0	12.036697						227	7	3	NaN	NaN	NaN	0.84945	1	4393	4393		0	0	1	25521	+		30824	9069	17719	18215	24624	24624					0.02785878871384284
WGVVKGAG	8	Unmodified	_WGVVKGAG_					0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	773.4304499151002	1	773.43045	772.423173	1.1388	0.00088078	0.30601	0.00023668	1.4448	0.0011175	773.4304250599237	20.911	0.16855	20.897	20.849	21.017	-0.014086	1308	79	0.83204526	0.047966838	0.8305259	169.6068	0	9.777695						242	8	3	NaN	NaN	NaN	0.84945	1	4315	4315		0	0	1	25813	+		30825	9069	17719	18215	24625	24625					0.02785878871384284
WGVVKGAG	8	Unmodified						0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	773.43045	772.423173	1.4872	0.0011502	-0.54785	-0.00042373	0.93935	0.00072652	773.429929520952	20.862	0.14455	20.862	20.838	20.983	0	1308	97	0.83204526	0.05904883	0.83204526	169.6068		12.036697	-0.017162	-0.00031028	0.00075972	NaN	0	227	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25521	+		30826	9069	17719	18215							0.02785878871384284
WGVVKGAG	8	Unmodified						0	0	0			REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	773.43045	772.423173	1.1388	0.00088078	0.30601	0.00023668	1.4448	0.0011175	773.4304250599237	20.911	0.16855	20.897	20.849	21.017	-0.014086	1308	79	0.83204526	0.047966838	0.8305259	169.6068		9.777695	0.017162	0.00035013	-0.00075972	NaN	0	242	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25813	+		30827	9069	17719	18215							0.02785878871384284
WGWTQGRWPKK	11	Unmodified	_WGWTQGRWPKK_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	477.25443909826663	3	477.254439	1428.74149	2.1632	0.0010324	1.0792	0.00051504	3.2423	0.0015474	477.25406460394527	18.17	0.072029	18.156	18.108	18.18	-0.01395	1422	43	0.7617651	0.02594322	0.7602457	462.08334	0	15.73703						68	4	2	NaN	NaN	NaN	0.76276	1	19308	19308		2.3495	1.3618	1	5311.7			30828	6158	17720	18216	24626	24626					0.04426681056816051
WGYLLFLSLVA	11	Unmodified	_WGYLLFLSLVA_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.3657243933001	2	641.365724	1280.7169	1.8965	0.0012164	-10.4	-0.0066704	-8.5038	-0.0054541	641.3613048129589	21.633	0.072252	21.633	21.561	21.633	0	1155	34	0.92591566	0.020191908	0.92591566	374.8548	0	8.174652						70	4	2	NaN	NaN	NaN	0.77039	1	18439	18439		1.9246	0.22244	1	4798	+		30829	9011	17721	18217	24627	24627					0.08776608130756358
WHCHLCPSSEH	11	Unmodified	_WHCHLCPSSEH_					0	0	0		nc|ENSG00000073008|P15151-4|PVR	nc|ENSG00000073008|P15151-4|PVR	nc|ENSG00000073008|P15151-4|PVR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	445.8500964436	3	445.850096	1334.52846	1.2713	0.00056682	-7.4355	-0.0033151	-6.1642	-0.0027483	445.8458819182757	24.357	0.12067	24.344	24.32	24.441	-0.012747	1413	40	0.7673241	0.024086237	0.76580465	465.7699	0	14.620453						82	6	2	NaN	NaN	NaN	0.78061	1	18451	18451		0.023298	0	1	7185.1			30830	7910	17722	18218	24628	24628					-0.12542316056828895
WHETALLI	8	Unmodified	_WHETALLI_					0	0	0		tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.77145986734996	2	491.77146	981.528367	1.4199	0.00069829	1.2038	0.00059199	2.6237	0.0012903	491.77276722473596	27.084	0.1207	27.084	27.012	27.133	0	1287	37	0.8449601	0.022131324	0.8449601	343.19025	0	8.988892						83	6	2	NaN	NaN	NaN	0.76633	1	7942	7942		13.737	2.1886	1	6776.5			30831	13832	17723	18219	24629	24629					0.036863752771296276
WHETALLI	8	Unmodified						0	0	0		tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	tr|U7SSQ5|U7SSQ5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01535PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	491.77146	981.528367	1.0605	0.00052152	-0.095024	-4.673E-05	0.96547	0.00047479	491.7709181831917	27.108	0.096529	27.098	27.074	27.17	-0.010126	1287	34	0.8449601	0.02028817	0.84344065	343.19028		8.240265	0.0066244	-0.00062445	-0.00075972	NaN	13.737	61	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4866.6			30832	13832	17723	18219							0.036863752771296276
WHGDNCYQFY	10	Unmodified	_WHGDNCYQFY_					0	0	0		ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.7587548101001	2	666.758755	1331.50296	2.0861	0.0013909	-11.918	-0.0079464	-9.8318	-0.0065554	666.7505372880113	25.419	0.096519	25.407	25.382	25.479	-0.012011	1134	46	0.9387595	0.027504742	0.93724006	379.8999	0	11.130707						140	5	4	NaN	NaN	NaN	0.69717	1	18413	18413		8.2448	2.5507	1	12120			30833	3704	17724	18220	24630	24630					-0.14953467307600476
WHGDNCYQFY	10	Unmodified						0	0	0		ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	666.758755	1331.50296	1.9132	0.0012757	-13.477	-0.008986	-11.564	-0.0077103	666.7502882193137	25.443	0.14477	25.443	25.395	25.539	0	1131	46	0.94059354	0.027510703	0.94059354	380.64212		11.133118	0.018218	-0.00081641	0.0016767	NaN	8.2448	172	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16316			30834	3704	17724	18220							-0.14953467307600476
WHHPRSGWGR	10	Unmodified	_WHHPRSGWGR_					0	0	0		nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3157545083	2	638.315755	1274.61696	2.081	0.0013283	-2.1989	-0.0014036	-0.11787	-7.5237E-05	638.3144864983066	25.515	0.072376	25.515	25.491	25.564	0	948	109	1.0520974	0.065526366	1.0520974	425.9609	0	26.529572						191	4	3	NaN	NaN	NaN	0.78213	1	18309	18309		0	0	1	20418			30835	3463	17725	18221	24631	24631					-0.009367716398628545
WHIEITTI	8	Unmodified	_WHIEITTI_					0	0	0			REV__LNX2|p.R238W|1|0.19|ENSG00000139517|chr13:27567783-27567783|G/A|missense_variant	REV__LNX2|p.R238W|1|0.19|ENSG00000139517|chr13:27567783-27567783|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.5462079544001	1	1012.54621	1011.53893	1.4137	0.0014315	8.5621	0.0086696	9.9759	0.010101	1012.5528264377893	32.104	0.048264	32.104	32.056	32.104	0	156	82	1.5263584	0.047832847	1.5263584	309.85098	0	9.710083						81	3	2	NaN	NaN	NaN	0.80692	1	9052	9052		8.2903	1.4271	1	8021.1	+		30836	13055	17726	18222	24632	24632					0.03362357931564475
WHIYTMEY	8	Unmodified	_WHIYTMEY_					0	0	0		nc|ENSG999|O00370|L1_ORF2;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|45|1|sense;L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|110|3|sense;ENST00000356189.5_1_10:15120101-15120344:-|nuORF;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|16|1|sense;L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|127|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|161|3|sense;L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|21|3|sense;ENST00000462119.5_1_6:111628768-111636625:-|nuORF	nc|ENSG999|O00370|L1_ORF2	nc|ENSG999|O00370|L1_ORF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.4975432023	1	1142.49754	1141.49027	2.2491	0.0025696	1.1004	0.0012572	3.3495	0.0038268	1142.4993803318073	30.535	0.096542	30.535	30.511	30.608	0	72	46	1.5758814	0.026492357	1.5758814	319.41403	0	5.36969						105	5	3	NaN	NaN	NaN	0.8439	1	14502	14502		3.1533	0.36816	1	8647.5			30837	8068	17727	18223	24633	24633					-0.07481878699832123
WHLLMIKKFYK	11	Unmodified	_WHLLMIKKFYK_					0	0	0			REV__ENSG00000169618|ENST00000303786|PROKR1	REV__ENSG00000169618|ENST00000303786|PROKR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	753.9363252452	2	753.936325	1505.8581	0.87167	0.00065718	-5.1566	-0.0038877	-4.2849	-0.0032305	753.9328878993429	33.72	0.072403	33.718	33.694	33.766	-0.0018463	1005	73	1.0174452	0.043797135	1.0159258	411.25256	0	17.70285						193	4	3	NaN	NaN	NaN	0.76488	1	19584	19584		2.8895	0	1	19721	+		30838	10556	17728	18224	24634	24634					0.12540283232351612
WHPTALHLR	9	Unmodified	_WHPTALHLR_					0	0	0		nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6	nc|ENSG00000129204|P35125-2|USP6	nc|ENSG00000129204|P35125-2|USP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	377.5454419557333	3	377.545442	1129.6145	1.9948	0.00075314	4.257	0.0016072	6.2518	0.0023603	377.54726280856244	13.949	0.071989	13.949	13.901	13.973	0	1491	40	0.7190863	0.024154305	0.7190863	437.2985	0	14.688934						69	4	2	NaN	NaN	NaN	0.55027	1	14077	14077		4.3102	0.38204	1	5887.3			30839	2596	17729	18225	24635	24635					0.05487379902501743
WHRDQATSWG	10	Unmodified	_WHRDQATSWG_					0	0	0		DRD5|p.A186T|1|0.24|ENSG00000169676|chr4:9782585-9782585|G/A|missense_variant	DRD5|p.A186T|1|0.24|ENSG00000169676|chr4:9782585-9782585|G/A|missense_variant	DRD5|p.A186T|1|0.24|ENSG00000169676|chr4:9782585-9782585|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2837856779	2	622.283786	1242.55302	1.5898	0.0009893	3.2122	0.0019989	4.802	0.0029882	622.7881055279588	26.094	0.24134	26.083	26.011	26.252	-0.011137	1086	133	0.9680805	0.08068508	0.9665611	392.0535	0	32.675873						439	11	2	NaN	NaN	NaN	0.47601	1	16839	16839		20.449	3.8645	1	77433			30840	271	17730	18226	24636	24636					-0.05855596587434775
WHREGISFHF	10	Unmodified	_WHREGISFHF_					0	0	0		nc|ENSG00000159322|Q9BRR6-4|ADPGK;nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.215872945	3	439.215873	1314.62579	1.8707	0.00082164	5.1307	0.0022535	7.0013	0.0030751	439.2185259632372	25.008	0.072378	24.996	24.948	25.021	-0.012011	1362	28	0.79879075	0.016644359	0.7972713	484.9454	0	10.104767						45	4	2	NaN	NaN	NaN	0.77318	1	18189	18189		0.81135	0.32058	1	3338.7			30841	4020	17731	18227	24637	24637					-0.018938427940156544
WHTGHTPDQV	10	Unmodified	_WHTGHTPDQV_					0	0	0		nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3	nc|ENSG00000169231|P49746-2|THBS3	nc|ENSG00000169231|P49746-2|THBS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	393.18434991593324	3	393.18435	1176.53122	1.5119	0.00059445	1.4007	0.00055073	2.9126	0.0011452	393.1844947354925	21.97	0.072327	21.956	21.884	21.956	-0.013895	1449	40	0.74507743	0.024117589	0.743558	452.88693	0	14.659607						67	4	2	NaN	NaN	NaN	0.72631	1	15119	15119		2.9701	0.50893	1	6173.6			30842	4664	17732	18228	24638	24638					-0.04998401336024472
WHTGHTPDQV	10	Unmodified						0	0	0		nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3	nc|ENSG00000169231|P49746-2|THBS3	nc|ENSG00000169231|P49746-2|THBS3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	393.18435	1176.53122	1.4508	0.00057044	1.1858	0.00046625	2.6367	0.0010367	393.18483205493806	21.802	0.14453	21.802	21.778	21.922	0	1449	43	0.74507743	0.025971413	0.74507743	452.88693		15.786407	-0.077266	-6.1904E-05	0.00075972	NaN	2.9701	100	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12686			30843	4664	17732	18228							-0.04998401336024472
WHTIIKVV	8	Unmodified	_WHTIIKVV_					0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.6036632538	1	995.603663	994.596387	2.084	0.0020748	-6.0967	-0.0060699	-4.0127	-0.0039951	995.5974895697753	53.242	0.048088	53.242	53.218	53.266	0	135	55	1.5387528	0.031863213	1.5387528	312.4387	0	6.4697266						92	3	3	NaN	NaN	NaN	0.84692	1	8378	8378		1.4396	1.0439	1	4987.8	+		30844	13383	17733	18229	24639	24639					0.09887244927790562
WHYFLVFQK	9	Unmodified	_WHYFLVFQK_					0	0	0		HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.2255978994666	3	423.225598	1266.65496	1.1493	0.0004864	-3.2255	-0.0013651	-2.0762	-0.00087869	423.2241833132455	24.285	0.072393	24.285	24.261	24.333	0	1437	31	0.7524962	0.018542886	0.7524962	457.01965	0	11.261841						60	4	2	NaN	NaN	NaN	0.65388	1	18158	18158		1.5054	0.7136	1	6297.7			30845	7811	17734	18230	24640	24640					0.032303015022534964
WHYFLVFQK	9	Unmodified						0	0	0		HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	HAT1|p.E206Q|1|0.07|ENSG00000128708|chr2:171966413-171966413|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	423.225598	1266.65496	1.6418	0.00069484	-2.7223	-0.0011521	-1.0805	-0.00045729	423.55848195796216	24.429	0.072412	24.417	24.344	24.417	-0.012749	1437	34	0.7524962	0.020398319	0.75097674	457.01965		12.388702	0.065905	0.0003173	-0.00075972	NaN	1.5054	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3653.8			30846	7811	17734	18230							0.032303015022534964
WIGFQSLLRQD	11	Unmodified	_WIGFQSLLRQD_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.8618688234001	2	681.861869	1361.70918	1.526	0.0010405	6.1559	0.0041975	7.6819	0.005238	682.3675200394761	21.633	0.19263	21.619	21.547	21.74	-0.013895	1083	43	0.9699114	0.02563101	0.96839195	392.41702	0	10.370087						221	9	3	NaN	NaN	NaN	0.6085	1	18794	18794		13.463	0.36188	1	17335	+		30847	9575	17735	18231	24641	24641					0.042798488631888176
WIIIALIASFA	11	Unmodified	_WIIIALIASFA_					0	0	0		tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	609.3682670822501	2	609.368267	1216.72198	0.64589	0.00039359	4.4648	0.0027207	5.1107	0.0031143	609.3710762753617	39.093	0.28942	39.093	39.068	39.358	0	1182	103	0.9093879	0.062502444	0.9093879	368.37003	0	25.318176						879	13	6	NaN	NaN	NaN	0.75921	1	16913	16913		3.5698	0.35817	1	238910			30848	13979	17736	18232	24642	24642					0.1222891199336118
WIPCTYRA	8	Unmodified	_WIPCTYRA_					0	0	0		ENST00000602224.5_1_19:35823460-35823868:+|nuORF;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.24983735574995	2	505.249837	1008.48512	0.49482	0.00025001	1.6556	0.00083651	2.1505	0.0010865	505.2509866366184	33.43	0.14478	33.428	33.38	33.525	-0.0018501	1311	70	0.83019954	0.042439044	0.8286801	337.0705	0	17.230743						184	7	4	NaN	NaN	NaN	0.79607	1	8748	8748		9.746	0	1	17693			30849	415	17737	18233	24643	24643					-0.018781377718028125
WIWRYHFEGFF	11	Unmodified	_WIWRYHFEGFF_					0	0	0		nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000105438|ENST00000330720|KDELR1	nc|ENSG00000105438|P24390-2|KDELR1	nc|ENSG00000105438|P24390-2|KDELR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	794.3802287520499	2	794.380229	1586.7459	1.6278	0.0012931	-7.1603	-0.005688	-5.5326	-0.004395	794.3749132116967	24.912	0.072393	24.9	24.875	24.948	-0.012392	999	52	1.0210962	0.03103137	1.0195768	412.5366	0	12.537079						135	4	3	NaN	NaN	NaN	0.74794	1	19717	19717		4.3102	0.38204	1	14304			30850	1539	17738	18234	24644	24644					-0.023998545202857713
WIWRYHFEGFF	11	Unmodified						0	0	0		nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000105438|ENST00000330720|KDELR1	nc|ENSG00000105438|P24390-2|KDELR1	nc|ENSG00000105438|P24390-2|KDELR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	794.380229	1586.7459	1.7942	0.0014253	-6.9319	-0.0055065	-5.1376	-0.0040812	794.3752767306959	24.888	0.072409	24.888	24.888	24.96	0	999	46	1.0210962	0.027377605	1.0210962	412.5366		11.060913	-0.0057725	0.00019843	0.00075972	NaN	4.3102	129	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16275			30851	1539	17738	18234							-0.023998545202857713
WIYISIYH	8	Unmodified	_WIYISIYH_					0	0	0			REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.7871099315502	2	547.78711	1093.55967	1.7156	0.00093977	-6.9825	-0.0038249	-5.2669	-0.0028852	547.7833441443256	22.911	0.14452	22.911	22.887	23.031	0	1284	67	0.8468043	0.0405522	0.8468043	343.452	0	16.447388						123	7	2	NaN	NaN	NaN	0.75682	1	12557	12557		15.013	2.425	1	21667	+		30852	11962	17739	18235	24645	24645					0.016629483112410526
WKDCHGHFA	9	Unmodified	_WKDCHGHFA_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	367.4958709065	3	367.495871	1099.46578	1.5901	0.00058434	5.4006	0.0019847	6.9907	0.0025691	367.49810405561726	14.789	0.047984	14.789	14.789	14.837	0	1515	28	0.7042165	0.016736686	0.7042165	428.397	0	10.181488						37	3	2	NaN	NaN	NaN	0.62619	1	12812	12812		4.3102	1.972	1	2764.3			30853	7593	17740	18236	24646	24646					-0.07997094062693577
WKDCHGHFA	9	Unmodified						0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	367.495871	1099.46578	2.5222	0.00092689	7.2715	0.0026722	9.7937	0.0035991	367.4985622816063	14.788	0.072062	14.776	14.776	14.848	-0.011738	1515	25	0.7042165	0.014876246	0.70269704	428.39697		9.049683	-0.0066428	0.0014769	-0.00075972	NaN	4.3102	38	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2149.3			30854	7593	17740	18236							-0.07997094062693577
WKEMLEEIKNY	11	Unmodified	_WKEMLEEIKNY_					0	0	0		tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	tr|U7SLF7|U7SLF7_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01916PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.9147603053667	3	494.91476	1481.72245	1.9456	0.00096288	-7.558	-0.0037406	-5.6125	-0.0027777	494.91008305246004	25.467	0.048252	25.455	25.455	25.503	-0.012011	1443	28	0.7487872	0.016694963	0.7472678	454.05548	0	10.123627						42	3	2	NaN	NaN	NaN	0.76251	1	19517	19517		3.3044	0.26793	1	4341.8			30855	13763	17741	18237	24647	24647					0.0008591886028170848
WKGHLDALTA	10	Unmodified	_WKGHLDALTA_					0	0	0		nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-3|NUP107	nc|ENSG00000111581|P57740-3|NUP107	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.2983731096	2	556.298373	1110.58219	1.5677	0.00087209	-7.0408	-0.0039168	-5.4732	-0.0030447	556.2946099892151	36.18	0.048203	36.181	36.157	36.205	0.0011024	1272	61	0.854179	0.03685367	0.8526596	346.37698	0	14.944489						100	3	2	NaN	NaN	NaN	0.77421	1	12934	12934		1.9246	0.22244	1	7336.4			30856	1813	17742	18238	24648	24648					0.031325477088330445
WKKPALNLIY	10	Unmodified	_WKKPALNLIY_					0	0	0		nc|ENSG00000064225|Q9Y274-2|ST3GAL6;ENSG00000064225|ENST00000483910|ST3GAL6	nc|ENSG00000064225|Q9Y274-2|ST3GAL6	nc|ENSG00000064225|Q9Y274-2|ST3GAL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.9166528805	3	415.916653	1244.72813	1.7293	0.00071926	-3.7935	-0.0015778	-2.0642	-0.00085853	415.9146928271978	16.662	0.1919	16.662	16.59	16.782	0	1446	43	0.7469324	0.025968552	0.7469324	453.7266	0	15.774689						180	9	3	NaN	NaN	NaN	0.66796	1	17638	17638		10.244	0	1	25466			30857	665	17743	18239	24649	24649					0.11555430224893826
WKLDDQTPYVV	11	Unmodified	_WKLDDQTPYVV_					0	0	0			REV__ENST00000534945.2_1_12:125834026-126068624:+|nuORF	REV__ENST00000534945.2_1_12:125834026-126068624:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	682.34825992165	2	682.34826	1362.68197	1.9086	0.0013023	3.4204	0.0023339	5.329	0.0036362	682.3514587184644	23.875	0.048227	23.875	23.851	23.899	0	1083	46	0.9699114	0.027451396	0.9699114	392.4142	0	11.106506						42	3	2	NaN	NaN	NaN	0.74155	1	19720	19720		4.7291	0.76056	1	2653.9	+		30858	9767	17744	18240	24650	24650					0.015133205321262722
WKLDDQTPYVV	11	Unmodified						0	0	0			REV__ENST00000534945.2_1_12:125834026-126068624:+|nuORF	REV__ENST00000534945.2_1_12:125834026-126068624:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	682.34826	1362.68197	1.9086	0.0013023	3.4204	0.0023339	5.329	0.0036362	682.3514587184644	23.875	0.048227	23.875	23.851	23.899	0	1083	46	0.9699114	0.027451396	0.9699114	392.4142		11.106506	0	0	0	NaN	4.7291	42	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2653.9	+		30859	9767	17744	18240							0.015133205321262722
WKRLTVQIR	9	Unmodified	_WKRLTVQIR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.5838966586666	3	400.583897	1198.72986	0.66641	0.00026695	-10.332	-0.0041389	-9.6657	-0.0038719	400.5798819091093	41.738	0.024075	41.738	41.738	41.762	0	1437	43	0.7524962	0.025957286	0.7524962	457.29843	0	15.774475						52	2	2	NaN	NaN	NaN	0.68801	1	16440	16440		0.079465	0	1	5585.8	+		30860	9503	17745	18241	24651	24651					0.1384448403348415
WKRWDPHWIWF	11	Unmodified	_WKRWDPHWIWF_					0	0	0		ENST00000607388.1_1_6:111345402-111345465:+|nuORF	ENST00000607388.1_1_6:111345402-111345465:+|nuORF	ENST00000607388.1_1_6:111345402-111345465:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	828.9147700611501	2	828.91477	1655.81499	1.8642	0.0015453	-11.384	-0.0094364	-9.5199	-0.0078911	829.407006210218	30.534	0.024113	30.529	30.529	30.553	-0.0057545	921	40	1.0684869	0.023666143	1.0669675	431.52728	0	9.557953						44	2	2	NaN	NaN	NaN	0.77278	1	19784	19784		1.5054	0.17424	1	2825.3			30861	7787	17746	18242	24652	24652					0.01331229499305664
WKRWDPHWIWF	11	Unmodified						0	0	0		ENST00000607388.1_1_6:111345402-111345465:+|nuORF	ENST00000607388.1_1_6:111345402-111345465:+|nuORF	ENST00000607388.1_1_6:111345402-111345465:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	828.91477	1655.81499	1.7096	0.0014171	-13.485	-0.011178	-11.776	-0.0097611	828.9039368788624	30.511	0.072418	30.511	30.487	30.56	0	921	37	1.0684869	0.021846771	1.0684869	431.5273		8.823212	-0.0087031	-0.0010395	0.00075972	NaN	1.5054	64	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3848.6			30862	7787	17746	18242							0.01331229499305664
WKTESRKNTEW	11	Unmodified	_WKTESRKNTEW_					0	0	0		ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.8651397938501	2	732.86514	1463.71573	1.4346	0.0010513	-9.9465	-0.0072894	-8.5119	-0.0062381	733.3588384911246	28.677	0.19304	28.677	28.629	28.822	0	1029	67	1.0028336	0.040190637	1.0028336	405.45282	0	16.24936						391	9	6	NaN	NaN	NaN	0.6011	1	20448	20448		13.949	4.3371	1	36976			30863	7630	17747	18243	24653	24653					0.002417420238998602
WKTESRKNTEW	11	Unmodified						0	0	0		ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	ENST00000567143.1_1_16:58438532-58438703:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	732.86514	1463.71573	1.1991	0.00087875	-11.173	-0.0081884	-9.974	-0.0073096	732.8587279964323	28.701	0.21718	28.692	28.644	28.861	-0.0083504	1020	88	1.0083145	0.05296427	1.006795	407.66876		21.413818	0.0075245	-0.00077601	0.0019807	NaN	13.949	354	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38472			30864	7630	17747	18243							0.002417420238998602
WLAECMGFLL	10	Unmodified	_WLAECMGFLL_					0	0	0			REV__ENST00000492955.1_1_2:160758938-160759124:-|nuORF	REV__ENST00000492955.1_1_2:160758938-160759124:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7879380610001	2	591.787938	1181.56132	1.0378	0.00061414	-9.8859	-0.0058504	-8.8481	-0.0052362	591.7823865275818	30.873	0.33785	30.873	30.801	31.139	0	1197	67	0.9001988	0.040434003	0.9001988	364.7695	0	16.384277						305	15	2	NaN	NaN	NaN	0.61246	1	15872	15872		14.042	0.30454	1	90630	+		30865	12475	17748	18244	24654	24654					-0.022195019866785515
WLALGSSG	8	Unmodified	_WLALGSSG_					0	0	0		ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.4093801220001	1	790.40938	789.402104	1.3512	0.001068	4.4276	0.0034996	5.7789	0.0045677	790.4127027287581	34.106	0.28958	34.105	34.032	34.322	-0.0012474	519	82	1.310647	0.04846275	1.3091276	267.0662	0	9.875092						558	13	3	NaN	NaN	NaN	0.75682	1	4538	4538		15.013	1.2758	1	74811			30866	1776	17749	18245	24655	24655					-0.0010213122814093367
WLDFYTWPNVL	11	Unmodified	_WLDFYTWPNVL_					0	0	0		ENST00000332995.11_1_6:13287586-13287817:+|nuORF	ENST00000332995.11_1_6:13287586-13287817:+|nuORF	ENST00000332995.11_1_6:13287586-13287817:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.2432057099667	3	485.243206	1452.70779	1.3401	0.00065027	2.5196	0.0012226	3.8597	0.0018729	485.2449269422257	29.473	0.28952	29.466	29.345	29.635	-0.0070667	1350	40	0.80618626	0.024028838	0.8046668	488.95175	0	14.573486						244	13	3	NaN	NaN	NaN	0.76304	1	19416	19416		1.1021	0.11437	1	38610			30867	6509	17750	18246	24656	24656					-0.000457852255749458
WLEGRCEVDPD	11	Unmodified	_WLEGRCEVDPD_					0	0	0			REV__ENST00000479448.1_1_7:107591647-107592525:-|nuORF	REV__ENST00000479448.1_1_7:107591647-107592525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.79025190375	2	659.790252	1317.56595	1.4945	0.00098608	-3.9724	-0.002621	-2.4779	-0.0016349	659.7875064730513	34.445	0.14479	34.445	34.421	34.565	0	1128	34	0.9424274	0.020167947	0.9424274	381.42563	0	8.162506						65	7	2	NaN	NaN	NaN	0.75376	1	19071	19071		3.9281	1.0386	1	4160.3	+		30868	12371	17751	18247	24657	24657					-0.0801294631021392
WLEGRCEVDPD	11	Unmodified						0	0	0			REV__ENST00000479448.1_1_7:107591647-107592525:-|nuORF	REV__ENST00000479448.1_1_7:107591647-107592525:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	659.790252	1317.56595	1.4945	0.00098608	-3.9724	-0.002621	-2.4779	-0.0016349	659.7875064730513	34.445	0.14479	34.445	34.421	34.565	0	1128	34	0.9424274	0.020167947	0.9424274	381.42563		8.162506	0	0	0	NaN	3.9281	65	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4160.3	+		30869	12371	17751	18247							-0.0801294631021392
WLELSSLII	9	Unmodified	_WLELSSLII_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.3157001955002	2	537.3157	1072.61685	1.2871	0.00069155	8.5494	0.0045937	9.8365	0.0052853	537.3203407093232	30.704	0.072414	30.704	30.68	30.753	0	1266	49	0.85786515	0.029492497	0.85786515	348.02258	0	11.964661						83	4	2	NaN	NaN	NaN	0.47587	1	11683	11683		10.605	2.3147	1	11558	+		30870	8938	17752	18248	24658	24658					0.08344370796976364
WLENMAMTYFC	11	Unmodified	_WLENMAMTYFC_					0	0	0			REV__ENST00000462086.1_1_X:153207964-153209081:-|nuORF	REV__ENST00000462086.1_1_X:153207964-153209081:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	704.7903517517001	2	704.790352	1407.56615	0.87185	0.00061447	-1.6957	-0.0011951	-0.82389	-0.00058067	704.7897932602082	28.194	0.12067	28.185	28.137	28.257	-0.0089779	1032	37	1.0010062	0.021931589	0.99948686	404.8651	0	8.870422						136	6	4	NaN	NaN	NaN	0.74794	1	19172	19172		4.3102	0.34164	1	9967.6	+		30871	8875	17753	18249	24659	24659					-0.12132985906214344
WLEPSAMFPGT	11	Unmodified	_WLEPSAMFPGT_					0	0	0			REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.53035824599993	3	412.530358	1234.56925	1.6432	0.00067787	-0.65461	-0.00027005	0.98858	0.00040782	412.5301107042231	22.284	0.07239	22.284	22.26	22.332	0	1389	25	0.7821392	0.014808655	0.7821392	475.15585	0	8.996368						54	4	2	NaN	NaN	NaN	0.64343	1	17383	17383		5.2847	0.55559	1	4043.2	+		30872	12987	17754	18250	24660	24660					-0.03865651465571318
WLEPSAMFPGT	11	Unmodified						0	0	0			REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	412.530358	1234.56925	1.6432	0.00067787	-0.65461	-0.00027005	0.98858	0.00040782	412.5301107042231	22.284	0.07239	22.284	22.26	22.332	0	1389	25	0.7821392	0.014808655	0.7821392	475.15585		8.996368	-0.0050066	-0.00060884	-0.00016577	NaN	5.2847	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043.2	+		30873	12987	17754	18250							-0.03865651465571318
WLEPSAMFPGT	11	Unmodified						0	0	0			REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	412.530358	1234.56925	1.7086	0.00070485	0.80126	0.00033054	2.5099	0.0010354	412.53101510121195	22.308	0.072239	22.294	22.27	22.342	-0.013731	1386	31	0.78399014	0.018510759	0.7824707	476.28033		11.245453	0.0050066	0.0011929	0.00016577	NaN	5.2847	43	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3227.4	+		30874	12987	17754	18250							-0.03865651465571318
WLERLSPGA	9	Unmodified	_WLERLSPGA_					0	0	0		ENST00000549478.1_1_12:104350574-104350781:-|nuORF	ENST00000549478.1_1_12:104350574-104350781:-|nuORF	ENST00000549478.1_1_12:104350574-104350781:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5523559648	1	1028.55236	1027.54508	1.6261	0.0016725	-7.1282	-0.0073318	-5.5022	-0.0056593	1028.5452117951436	34.3	0.1929	34.3	34.203	34.396	0	138	88	1.5369828	0.051359773	1.5369828	311.94244	0	10.423828						233	9	2	NaN	NaN	NaN	0.64666	1	9675	9675		3.5698	0	1	23402			30875	7537	17755	18251	24661	24661					0.03240876163090434
WLGPAPLG	8	Unmodified	_WLGPAPLG_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	405.7290637364	2	405.729064	809.443575	1.0693	0.00043384	-2.1235	-0.00086157	-1.0542	-0.00042773	405.72834631157355	27.011	0.09656	27.001	26.977	27.074	-0.010126	1362	37	0.79879075	0.022191346	0.7972713	325.38937	0	9.039703						87	5	2	NaN	NaN	NaN	0.81214	1	4786	4786		7.5902	0.79624	1	9714.9			30876	2526	17756	18252	24662	24662					0.031230495311888262
WLLFEWCRSF	10	Unmodified	_WLLFEWCRSF_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.83680816585	2	693.836808	1385.65906	1.6389	0.0011371	-7.1889	-0.0049879	-5.55	-0.0038508	693.8314620518025	25.202	0.07242	25.202	25.202	25.274	0	1068	52	0.97906286	0.031114936	0.97906286	396.05084	0	12.586639						84	4	2	NaN	NaN	NaN	0.70677	1	19937	19937		7.5876	0.60324	1	14677	+		30877	10760	17757	18253	24663	24663					-0.018339770663260424
WLLHEIIIQL	10	Unmodified	_WLLHEIIIQL_					0	0	0			REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF	REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1277.7616204588	1	1277.76162	1276.75434	1.5867	0.0020274	-1.55	-0.0019805	0.0367	4.6893E-05	1277.7603393182167	39.524	0.12018	39.529	39.529	39.649	0.0053368	582	76	1.2729256	0.044988036	1.2714062	257.68115	0	9.107025						147	6	2	NaN	NaN	NaN	0.78146	1	17542	17542		0.16111	0	1	9708.7	+		30878	12635	17758	18254	24664	24664					0.12703699396365664
WLLHGSEM	8	Unmodified	_WLLHGSEM_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.73402011605003	2	486.73402	971.453487	2.0213	0.00098386	-1.8239	-0.00088777	0.19742	9.6089E-05	486.7330306987931	23.465	0.048239	23.465	23.465	23.513	0	1242	34	0.87260187	0.020253062	0.87260187	354.46808	0	8.227173						63	3	2	NaN	NaN	NaN	0.84876	1	7644	7644		0.39566	0	1	5679.8	+		30879	13091	17759	18255	24665	24665					-0.033381305257421445
WLLHGSEM	8	Unmodified						0	0	0			REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	486.73402	971.453487	2.0213	0.00098386	-1.8239	-0.00088777	0.19742	9.6089E-05	486.7330306987931	23.465	0.048239	23.465	23.465	23.513	0	1242	34	0.87260187	0.020253062	0.87260187	354.46808		8.227173	-0.017297	-0.00023065	0.00075972	NaN	0.39566	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5679.8	+		30880	13091	17759	18255							-0.033381305257421445
WLLHGSEM	8	Unmodified						0	0	0			REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	REV__nc|ENSG00000089472|Q9BQS7-3|HEPH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	486.73402	971.453487	2.3065	0.0011227	-1.0585	-0.00051521	1.248	0.00060746	486.73337465660506	23.513	0.072369	23.5	23.476	23.548	-0.013294	1242	37	0.87260187	0.022095501	0.8710824	354.46808		8.975616	0.017297	0.00051446	-0.00075972	NaN	0.39566	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5080.8	+		30881	13091	17759	18255							-0.033381305257421445
WLLLVLVLVLL	11	Unmodified	_WLLLVLVLVLL_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1293.8908437178	1	1293.89084	1292.88357	3.0995	0.0040104	-4.3934	-0.0056845	-1.2938	-0.0016741	1293.887082624996	25.781	0.048256	25.781	25.757	25.805	0	834	82	1.12119	0.04900503	1.12119	226.93463	0	9.9189						67	3	2	NaN	NaN	NaN	0.78138	1	18635	18635		0	0	1	3814.1			30882	7941	17760	18256	24666	24666					0.24884081026448257
WLLNDEAL	8	Unmodified	_WLLNDEAL_					0	0	0			REV__FBXW7|p.I384Wfs*2|1|0.21|ENSG00000109670|chr4:152329739-152329758|CAAAACTGTAAGCATGTGAT/-|frameshift_variant	REV__FBXW7|p.I384Wfs*2|1|0.21|ENSG00000109670|chr4:152329739-152329758|CAAAACTGTAAGCATGTGAT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.2530999387	2	487.2531	972.491647	2.32	0.0011304	-5.9836	-0.0029155	-3.6636	-0.0017851	487.2499354523051	18.316	0.12005	18.316	18.292	18.412	0	1356	43	0.8024889	0.02588147	0.8024889	325.98196	0	10.513397						122	6	3	NaN	NaN	NaN	0.69825	1	7677	7677		19.164	0.93009	1	15031	+		30883	9061	17761	18257	24667	24667					0.004300786605767826
WLNKVNPHK	9	Unmodified	_WLNKVNPHK_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.21721386013337	3	379.217214	1134.62981	0.85976	0.00032604	5.8835	0.0022311	6.7432	0.0025572	379.2193792994693	12.796	0.1441	12.796	12.748	12.892	0	1518	28	0.7023569	0.016736686	0.7023569	427.10205	0	10.177582						78	7	2	NaN	NaN	NaN	0.47587	1	14276	14276		6.4299	0	1	6924.2			30884	793	17762	18258	24668	24668					0.06788246699693445
WLPDVVLL	8	Unmodified	_WLPDVVLL_					0	0	0		ENST00000573209.1_1_17:7350169-7350494:+|nuORF;nc|ENSG00000170175|P11230-2|CHRNB1;CHRNB1|p.M465Tfs*3|1|0.03|ENSG00000170175|chr17:7456608-7456609|-/AA|frameshift_variant;ENSG00000170175|ENST00000306071|CHRNB1	ENST00000573209.1_1_17:7350169-7350494:+|nuORF	ENST00000573209.1_1_17:7350169-7350494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.5658807640001	1	954.565881	953.558604	0.85855	0.00081954	5.6514	0.0053947	6.51	0.0062142	954.5704518914573	33.383	0.096554	33.383	33.335	33.431	0	291	49	1.446459	0.028476596	1.446459	293.8714	0	5.7854614						85	5	2	NaN	NaN	NaN	0.62311	1	7178	7178		23.85	0	1	6656.9			30885	160	17763	18259	24669	24669					0.07996733942331957
WLPSARGK	8	Unmodified	_WLPSARGK_					0	0	0			REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	914.5206619059002	1	914.520662	913.513385	2.2676	0.0020738	-1.609	-0.0014714	0.65865	0.00060235	914.5199045180005	26.143	0.16895	26.143	26.046	26.215	0	324	106	1.42687	0.062328935	1.42687	290.0725	0	12.6710205						263	8	2	NaN	NaN	NaN	0.84876	1	6302	6302		0.39566	0	1	41937	+		30886	12421	17764	18260	24670	24670					0.05316928199806625
WLPSARGK	8	Unmodified						0	0	0			REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	914.520662	913.513385	2.2676	0.0020738	-1.609	-0.0014714	0.65865	0.00060235	914.5199045180005	26.143	0.16895	26.143	26.046	26.215	0	324	106	1.42687	0.062328935	1.42687	290.0725		12.6710205	0.0056852	0.0005663	-0.001022	NaN	0.39566	263	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41937	+		30887	12421	17764	18260							0.05316928199806625
WLPSARGK	8	Unmodified						0	0	0			REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	REV__ENST00000485631.1_1_22:18189556-18209569:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	914.520662	913.513385	2.1013	0.0019217	-2.9114	-0.0026625	-0.81007	-0.00074082	914.5187238615564	26.143	0.12069	26.131	26.107	26.228	-0.011137	318	100	1.4304334	0.0587672	1.428914	290.7969		11.94696	-0.0056852	-0.00062477	0.001022	NaN	0.39566	291	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41282	+		30888	12421	17764	18260							0.05316928199806625
WLPVADLL	8	Unmodified	_WLPVADLL_					0	0	0			REV__ENST00000520970.5_1_8:22059101-22064847:+|nuORF	REV__ENST00000520970.5_1_8:22059101-22064847:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	463.7709285511	2	463.770929	925.527304	1.059	0.00049114	-7.9259	-0.0036758	-6.8669	-0.0031847	463.7673246843651	25.009	0.096521	25.009	24.96	25.057	0	1329	43	0.81912065	0.02586186	0.81912065	332.97333	0	10.512878						66	5	2	NaN	NaN	NaN	0.8439	1	6507	6507		3.1533	0	1	6927.9	+		30889	12596	17765	18261	24671	24671					0.06156160908221864
WLQEGLEL	8	Unmodified	_WLQEGLEL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	494.2609249708	2	494.260925	986.507297	1.0244	0.0005063	-1.2009	-0.00059355	-0.17651	-8.7243E-05	494.25856383757366	14.237	0.26348	14.225	14.154	14.417	-0.011218	1329	82	0.81912065	0.04986292	0.8176012	332.6721	0	20.250977						394	12	3	NaN	NaN	NaN	0.26796	1	7932	7932		44.638	9.342	1	92740			30890	3115	17766	18262	24672	24672					0.01350365177609092
WLRQQTLLF	9	Unmodified	_WLRQQTLLF_					0	0	0		ENST00000581709.1_1_18:67758841-67776916:-|nuORF	ENST00000581709.1_1_18:67758841-67776916:-|nuORF	ENST00000581709.1_1_18:67758841-67776916:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.8454904777001	2	602.84549	1203.67643	1.2131	0.00073131	-7.5843	-0.0045722	-6.3712	-0.0038409	602.8423895485612	45.095	0.071991	45.095	45.071	45.143	0	1176	40	0.9130621	0.023878634	0.9130621	369.90335	0	9.673828						65	4	2	NaN	NaN	NaN	0.16171	1	16589	16589		27.789	1.0573	1	4849.1			30891	7685	17767	18263	24673	24673					0.08273686530992563
WLRQQTLLF	9	Unmodified						0	0	0		ENST00000581709.1_1_18:67758841-67776916:-|nuORF	ENST00000581709.1_1_18:67758841-67776916:-|nuORF	ENST00000581709.1_1_18:67758841-67776916:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.84549	1203.67643	-0.034998	-2.1098E-05	-6.1971	-0.0037359	-6.2321	-0.003757	602.8415501448604	45.093	0.11982	45.105	45.057	45.177	0.011646	1173	40	0.91489893	0.023878634	0.9133795	370.6475		9.673798	0.0047574	0.00064842	0.00015869	NaN	27.789	90	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6868.5			30892	7685	17767	18263							0.08273686530992563
WLSDRKDKKN	10	Unmodified	_WLSDRKDKKN_					0	0	0			REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	REV__tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	430.5702043407667	3	430.570204	1288.68878	1.3397	0.00057684	2.6204	0.0011283	3.9601	0.0017051	430.5712247809492	19.18	0.07192	19.18	19.156	19.228	0	1395	31	0.7784366	0.018514812	0.7784366	472.68716	0	11.242676						70	4	2	NaN	NaN	NaN	0.5358	1	18575	18575		10.861	0	1	9827.6	+		30893	13425	17768	18264	24674	24674					0.05598678203364216
WLSGASGL	8	Unmodified	_WLSGASGL_					0	0	0			REV__ENSG00000187942|ENST00000344642|LDLRAD2	REV__ENSG00000187942|ENST00000344642|LDLRAD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	790.4093801220002	1	790.40938	789.402104	1.3863	0.0010957	2.9389	0.0023229	4.3252	0.0034186	790.41271744025	31.693	0.072395	31.688	31.616	31.688	-0.0044174	495	40	1.3249949	0.023303986	1.3234755	269.9898	0	4.748596						57	4	2	NaN	NaN	NaN	0.82332	1	4537	4537		6.0903	2.5171	1	3745.4	+		30894	11041	17769	18265	24675	24675					-0.0010213122812956499
WLVLSGGL	8	Unmodified	_WLVLSGGL_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.4927158209003	1	844.492716	843.485439	1.4225	0.0012013	-1.3512	-0.0011411	0.071297	6.0209E-05	844.4908280498802	30.463	0.072372	30.463	30.439	30.511	0	1284	37	0.8468043	0.02212894	0.8468043	172.36128	0	4.504196						104	4	3	NaN	NaN	NaN	0.84945	1	5317	5317		0	0	1	14590			30895	8009	17770	18266	24676	24676					0.05743605219731762
WMGHSDLPYE	10	Unmodified	_WMGHSDLPYE_					0	0	0		ENST00000392054.7_1_2:229889964-229890054:-|nuORF	ENST00000392054.7_1_2:229889964-229890054:-|nuORF	ENST00000392054.7_1_2:229889964-229890054:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.17809604686664	3	412.178096	1233.51246	1.5665	0.00064569	2.9242	0.0012053	4.4907	0.001851	412.1793982634302	19.108	0.14388	19.108	19.012	19.156	0	1518	37	0.7023569	0.022316813	0.7023569	426.69147	0	13.5578						128	7	3	NaN	NaN	NaN	0.70538	1	17357	17357		7.6826	1.9854	1	11419			30896	6751	17771	18267	24677	24677					-0.09495699022090776
WMGHSDLPYE	10	Unmodified						0	0	0		ENST00000392054.7_1_2:229889964-229890054:-|nuORF	ENST00000392054.7_1_2:229889964-229890054:-|nuORF	ENST00000392054.7_1_2:229889964-229890054:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	412.178096	1233.51246	1.9936	0.00082174	3.2792	0.0013516	5.2728	0.0021733	412.17946550235126	19.106	0.024073	19.092	19.068	19.092	-0.014141	1512	31	0.7060759	0.018595338	0.70455647	428.95087		11.296936	-0.0082171	0.00025307	0.0010998	NaN	7.6826	52	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3484.6			30897	6751	17771	18267							-0.09495699022090776
WMIDCSCTF	9	Unmodified	_WMIDCSCTF_					0	0	0			REV__nc|ENSG00000148053|Q16620-2|NTRK2	REV__nc|ENSG00000148053|Q16620-2|NTRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1105.4151354807998	1	1105.41514	1104.40786	1.0936	0.0012089	-3.5787	-0.0039559	-2.4851	-0.002747	1105.4117103322048	33.094	0.1689	33.094	33.069	33.238	0	177	55	1.5139546	0.0319072	1.5139546	306.98532	0	6.469818						195	8	3	NaN	NaN	NaN	0.45297	1	13012	13012		11.548	0.37812	1	18516	+		30898	9971	17772	18268	24678	24678					-0.14016860094670847
WMIHRIMYIF	10	Unmodified	_WMIHRIMYIF_					0	0	0		ENST00000537556.1_1_12:64238596-64474299:+|nuORF	ENST00000537556.1_1_12:64238596-64474299:+|nuORF	ENST00000537556.1_1_12:64238596-64474299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	705.3646785358001	2	705.364679	1408.7148	1.4112	0.00099539	3.9506	0.0027866	5.3618	0.003782	705.3668957381803	29.86	0.072424	29.86	29.836	29.908	0	1041	37	0.9955231	0.021938622	0.9955231	402.64417	0	8.873199						50	4	2	NaN	NaN	NaN	0.64889	1	20136	20136		11.548	2.5865	1	3738.4			30899	7479	17773	18269	24679	24679					0.026795328496291404
WMIHRIMYIF	10	Unmodified	_WMIHRIMYIF_					0	0	0		ENST00000537556.1_1_12:64238596-64474299:+|nuORF	ENST00000537556.1_1_12:64238596-64474299:+|nuORF	ENST00000537556.1_1_12:64238596-64474299:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	705.3646785358001	2	705.364679	1408.7148	1.1338	0.00079977	6.6224	0.0046712	7.7563	0.005471	705.3694006974761	29.859	0.072388	29.852	29.828	29.9	-0.0070648	1041	37	0.9955231	0.021936357	0.99400365	402.64417	0	8.872253						73	4	3	NaN	NaN	NaN	0.66268	1	19187	19187		10.605	3.0174	1	5096.3			30900	7479	17773	18269	24680	24680					0.026795328496291404
WMNEFPGIDFH	11	Unmodified	_WMNEFPGIDFH_					0	0	0			REV__ENSG00000112541|ENST00000539869|PDE10A	REV__ENSG00000112541|ENST00000539869|PDE10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.8057050027	2	696.805705	1391.59686	0.33225	0.00023151	-2.9831	-0.0020786	-2.6508	-0.0018471	696.8035114909273	33.647	0.096489	33.645	33.621	33.718	-0.0018463	1065	55	0.9808926	0.032932818	0.97937316	396.77426	0	13.321472						121	5	2	NaN	NaN	NaN	0.76304	1	19056	19056		3.2116	0.32214	1	11427	+		30901	9122	17774	18270	24681	24681					-0.08327748205329044
WMRWRWSRALW	11	Unmodified	_WMRWRWSRALW_					0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	817.4196966510501	2	817.419697	1632.82484	2.8198	0.0023049	-12.293	-0.010049	-9.4735	-0.0077438	817.9108838894249	24.526	0.024036	24.514	24.514	24.538	-0.012392	945	22	1.0539193	0.01275146	1.0523999	425.6936	0	5.1505127						28	2	2	NaN	NaN	NaN	0.62211	1	19758	19758		12.57	8.6416	1	1871.7	+		30902	13315	17775	18271	24682	24682					0.03374094233049618
WMRWRWSRALW	11	Unmodified						0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	817.419697	1632.82484	2.8198	0.0023049	-12.293	-0.010049	-9.4735	-0.0077438	817.9108838894249	24.526	0.024036	24.514	24.514	24.538	-0.012392	945	22	1.0539193	0.01275146	1.0523999	425.6936		5.1505127	0.0058101	0.0045612	-0.00075972	NaN	12.57	28	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1871.7	+		30903	13315	17775	18271							0.03374094233049618
WMVQGHCFDQ	10	Unmodified	_WMVQGHCFDQ_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.50755919893334	3	417.507559	1249.50085	1.6035	0.00066945	4.0588	0.0016946	5.6623	0.0023641	417.84242853142894	34.589	0.096527	34.589	34.589	34.686	0	1473	61	0.7302302	0.037130177	0.7302302	443.56216	0	22.553894						87	5	2	NaN	NaN	NaN	0.76548	1	17757	17757		1.5256	0.80948	1	6698.5	+		30904	10044	17776	18272	24683	24683					-0.11392219317053787
WNASFAGK	8	Unmodified	_WNASFAGK_					0	0	0		nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	nc|ENSG00000128510|Q9UI42-2|CPA4	nc|ENSG00000128510|Q9UI42-2|CPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.71922733160005	2	440.719227	879.423902	2.1216	0.00093501	2.3526	0.0010369	4.4742	0.0019719	440.72037933491384	23.441	0.38578	23.427	23.379	23.765	-0.013294	1323	79	0.8228144	0.04802394	0.82129496	334.73114	0	19.536743						707	17	5	NaN	NaN	NaN	0.74229	1	5666	5666		16.417	4.8682	1	435850			30905	2568	17777	18273	24684	24684					-0.02063326479560601
WNDLCGYNY	9	Unmodified	_WNDLCGYNY_					0	0	0			REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1147.4513212912	1	1147.45132	1146.44404	2.4756	0.0028407	-3.5799	-0.0041077	-1.1043	-0.0012671	1147.4462043884848	24.695	0.048222	24.682	24.658	24.707	-0.012392	66	61	1.579413	0.03531742	1.5778936	320.11334	0	7.158081						65	3	2	NaN	NaN	NaN	0.31737	1	14178	14178		17.799	3.7574	1	4788.4	+		30906	10619	17778	18274	24685	24685					-0.12331943601930107
WNGAGNKL	8	Unmodified	_WNGAGNKL_					0	0	0			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.22467685025	2	430.224677	858.434801	0.15594	6.7089E-05	-8.788	-0.0037808	-8.6321	-0.0037137	430.2224618844028	55.146	0.024017	55.145	55.145	55.169	-0.00061798	1437	25	0.7524962	0.014835954	0.75097674	306.23984	0	6.0377197						31	2	2	NaN	NaN	NaN	0.84727	1	5381	5381		1.2418	0	1	2732.5	+		30907	8331	17779	18275	24686	24686					-7.92410529584231E-05
WNGPRGIL	8	Unmodified	_WNGPRGIL_					0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5050118417001	1	912.505012	911.497735	1.4407	0.0013147	1.9689	0.0017967	3.4097	0.0031113	912.508177394855	41.137	0.3847	41.137	40.969	41.353	0	396	91	1.3840506	0.053604126	1.3840506	281.37683	0	10.897705						935	17	4	NaN	NaN	NaN	0.82332	1	6257	6257		6.0903	0.62448	1	163210	+		30908	13557	17780	18276	24687	24687					0.03844641682758265
WNGPRGIL	8	Unmodified						0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	912.505012	911.497735	1.4407	0.0013147	1.9689	0.0017967	3.4097	0.0031113	912.508177394855	41.137	0.3847	41.137	40.969	41.353	0	396	91	1.3840506	0.053604126	1.3840506	281.37683		10.897705	0.0091922	7.6632E-05	-0.00013344	NaN	6.0903	935	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163210	+		30909	13557	17780	18276							0.03844641682758265
WNGPRGIL	8	Unmodified						0	0	0			REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	REV__tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	912.505012	911.497735	1.498	0.001367	1.7936	0.0016367	3.2917	0.0030037	912.5080988870525	41.111	0.48143	41.118	40.974	41.456	0.0074959	393	94	1.3858368	0.055393934	1.3843174	281.74		11.261566	-0.0091922	-8.3331E-05	0.00013344	NaN	6.0903	792	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195820	+		30910	13557	17780	18276							0.03844641682758265
WNHMHFQHHAK	11	Unmodified	_WNHMHFQHHAK_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1;ENST00000496123.6_1_11:61571226-61578532:-|nuORF	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.5632782585667	3	491.563278	1471.66801	1.6056	0.00078926	0.77293	0.00037995	2.3785	0.0011692	491.56413060763924	20.333	0.048061	20.333	20.333	20.381	0	1377	34	0.7895419	0.020351946	0.7895419	478.79883	0	12.341949						55	3	2	NaN	NaN	NaN	0.77843	1	20478	20478		0.11792	0.016398	1	4872.7			30911	3681	17781	18277	24688	24688					-0.048961906572912994
WNLKGVAG	8	Unmodified	_WNLKGVAG_					0	0	0		ENST00000494738.5_1_2:241531329-241535404:+|nuORF;nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10	ENST00000494738.5_1_2:241531329-241535404:+|nuORF	ENST00000494738.5_1_2:241531329-241535404:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	422.73742008475006	2	422.73742	843.460287	1.0952	0.00046297	2.9987	0.0012677	4.0939	0.0017306	422.738303155387	26.987	0.096552	26.977	26.953	27.049	-0.010126	1359	34	0.8006399	0.02034092	0.7991205	325.92358	0	8.280365						72	5	2	NaN	NaN	NaN	0.80071	1	5180	5180		9.1232	0	1	6288.5			30912	3369	17782	18278	24689	24689					0.03229550417142946
WNLVLNGRF	9	Unmodified	_WNLVLNGRF_					0	0	0		ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	373.5416974929667	3	373.541697	1117.60326	2.0667	0.00077202	-10.714	-0.0040022	-8.6476	-0.0032302	373.53774337305873	17.834	0.23981	17.82	17.724	17.964	-0.013786	1491	55	0.7190863	0.03343892	0.71756685	437.35513	0	20.33786						371	11	4	NaN	NaN	NaN	0.45297	1	13187	13187		6.9844	0	1	59817			30913	537	17783	18279	24690	24690					0.04916557808383004
WNLVLNGRF	9	Unmodified						0	0	0		ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	373.541697	1117.60326	2.0284	0.00075768	-12.197	-0.0045562	-10.169	-0.0037985	373.53710413699173	17.669	0.21573	17.669	17.597	17.813	0	1491	52	0.7190863	0.03158295	0.7190863	437.35513		19.209045	-0.075435	-0.00070022	0.00075972	NaN	6.9844	302	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58534			30914	537	17783	18279							0.04916557808383004
WNLYHYYKQFF	11	Unmodified	_WNLYHYYKQFF_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.925988102	3	536.925988	1607.75613	0.84849	0.00045558	-3.6724	-0.0019718	-2.8239	-0.0015162	536.9246343399135	28.266	0.19306	28.257	28.137	28.33	-0.0089779	1383	46	0.7858409	0.027755678	0.7843215	476.17905	0	16.818512						297	9	4	NaN	NaN	NaN	0.7686	1	19737	19737		2.239	0.20311	1	29681			30915	1858	17784	18280	24691	24691					-0.023432915857029002
WNLYHYYKQFF	11	Unmodified						0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	536.925988	1607.75613	2.0167	0.0010828	-4.3311	-0.0023255	-2.3144	-0.0012426	536.9233133143641	28.074	0.16892	28.074	28.026	28.194	0	1383	52	0.7858409	0.031459868	0.7858409	476.17905		19.06305	-0.091684	-0.0006495	0.00075972	NaN	2.239	235	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33626			30916	1858	17784	18280							-0.023432915857029002
WNNALLLEQAC	11	Unmodified	_WNNALLLEQAC_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8135300348001	2	637.81353	1273.61251	1.7044	0.0010871	3.7196	0.0023724	5.424	0.0034595	637.81602861158	24.116	0.12062	24.103	24.103	24.224	-0.012749	1143	67	0.9332562	0.040351212	0.93173677	377.849	0	16.337067						173	6	2	NaN	NaN	NaN	0.6085	1	17482	17482		13.463	0	1	22229	+		30917	8672	17785	18281	24692	24692					-0.013354616882679693
WNNALLLEQAC	11	Unmodified						0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	637.81353	1273.61251	1.6833	0.0010736	5.6508	0.0036041	7.3341	0.0046778	637.8173005776362	23.947	0.19294	23.947	23.899	24.092	0	1140	97	0.93509084	0.05870533	0.93509084	378.5918		23.768127	-0.07796	0.0012694	0.001677	NaN	13.463	195	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21447	+		30918	8672	17785	18281							-0.013354616882679693
WNNALLLEQAC	11	Unmodified						0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.81353	1273.61251	1.7044	0.0010871	3.7196	0.0023724	5.424	0.0034595	637.81602861158	24.116	0.12062	24.103	24.103	24.224	-0.012749	1143	67	0.9332562	0.040351212	0.93173677	377.849		16.337067	0.07796	-0.0011941	-0.001677	NaN	13.463	173	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22229	+		30919	8672	17785	18281							-0.013354616882679693
WNPRRWWRWCW	11	Unmodified	_WNPRRWWRWCW_					0	0	0		ENST00000564348.5_1_19:7982609-7983760:+|nuORF;ENST00000566166.1_1_19:7982552-7983971:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	ENST00000564348.5_1_19:7982609-7983760:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.41494562415	2	866.414946	1730.81534	0.97266	0.00084273	0.80479	0.00069729	1.7775	0.00154	866.4153849728851	31.501	0.096523	31.501	31.452	31.549	0	849	34	1.1121149	0.019969344	1.1121149	448.98563	0	8.062042						110	5	3	NaN	NaN	NaN	0.77843	1	20854	20854		0.51604	0	1	8574.2			30920	7620	17786	18282	24693	24693					-0.0208367405248282
WNVQWRKRRRM	11	Unmodified	_WNVQWRKRRRM_					0	0	0			REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	REV__ENST00000546876.1_1_12:114395740-114397707:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.3002768680667	3	539.300277	1614.879	1.3633	0.00073524	1.5924	0.00085875	2.9557	0.001594	539.3011649623566	19.298	0.16826	19.284	19.164	19.332	-0.014141	1332	37	0.8172735	0.022167265	0.81575406	495.2069	0	13.431732						135	8	2	NaN	NaN	NaN	0.77858	1	19740	19740		0.49077	0	1	25341	+		30921	12720	17787	18283	24694	24694					0.09615686384586297
WNYLYLWEFY	10	Unmodified	_WNYLYLWEFY_					0	0	0			REV__tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	REV__tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	748.8478957809001	2	748.847896	1495.68124	1.3866	0.0010383	-1.1887	-0.00089019	0.1978	0.00014812	748.8470996355867	29.16	0.048286	29.16	29.16	29.208	0	858	70	1.1066676	0.041781068	1.1066676	447.34402	0	16.888947						99	3	3	NaN	NaN	NaN	0.78146	1	20569	20569		0.16111	0.026183	1	5355.5	+		30922	13569	17788	18284	24695	24695					-0.04677474116897429
WNYTLQQYQ	9	Unmodified	_WNYTLQQYQ_					0	0	0		ENPEP|p.E805Q|1|0.26|ENSG00000138792|chr4:110549798-110549798|G/C|missense_variant	ENPEP|p.E805Q|1|0.26|ENSG00000138792|chr4:110549798-110549798|G/C|missense_variant	ENPEP|p.E805Q|1|0.26|ENSG00000138792|chr4:110549798-110549798|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.2907450427501	2	622.290745	1242.56694	2.0385	0.0012685	-8.7587	-0.0054505	-6.7202	-0.0041819	622.7875783728564	26.07	0.19309	26.07	25.95	26.143	0	1086	127	0.9680805	0.07700926	0.9680805	392.0535	0	31.187225						538	9	4	NaN	NaN	NaN	0.2961	1	17587	17587		19.164	7.1149	1	77500			30923	288	17789	18285	24696	24696					-0.04464363878992117
WPAAELLL	8	Unmodified	_WPAAELLL_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL-WDR70|1|fusion	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	912.5189305714001	1	912.518931	911.511654	1.0154	0.0009266	-0.30583	-0.00027908	0.7096	0.00064752	912.5189247140544	33.697	0.096531	33.697	33.673	33.769	0	303	73	1.4393384	0.042737603	1.4393384	292.6168	0	8.688507						128	5	2	NaN	NaN	NaN	0.69631	1	6262	6262		19.285	1.5044	1	12077			30924	4305	17790	18286	24697	24697					0.052358743911895544
WPALEDLVL	9	Unmodified	_WPALEDLVL_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1055.5771737317998	1	1055.57717	1054.5699	1.9725	0.0020822	-3.9312	-0.0041497	-1.9587	-0.0020675	1055.5767908674095	36.348	0.16853	36.35	36.302	36.47	0.0016747	126	130	1.544062	0.0760653	1.5425426	313.27283	0	15.4328						625	8	3	NaN	NaN	NaN	0.11656	1	10620	10620		47.04	19.251	1	118260			30925	799	17791	18287	24698	24698					0.044795112457904906
WPALEDLVL	9	Unmodified						0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1055.57717	1054.5699	2.0601	0.0021746	-2.3784	-0.0025106	-0.31832	-0.00033601	1055.576201132543	36.326	0.28939	36.326	36.302	36.591	0	129	142	1.5422925	0.08316767	1.5422925	312.91382		16.87378	-0.012005	0.00054231	-0.00012504	NaN	47.04	596	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106590			30926	799	17791	18287							0.044795112457904906
WPALSIVII	9	Unmodified	_WPALSIVII_					0	0	0		nc|ENSG00000147246|P28335-2|HTR2C;ENSG00000147246|ENST00000276198|HTR2C	nc|ENSG00000147246|P28335-2|HTR2C	nc|ENSG00000147246|P28335-2|HTR2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.6237299938999	1	1011.62373	1010.61645	2.952	0.0029863	-5.9969	-0.0060666	-3.0449	-0.0030803	1011.6181026606124	38.682	0.04805	38.686	38.662	38.71	0.0040245	153	34	1.5281296	0.019485354	1.5266101	310.21442	0	3.955597						40	3	2	NaN	NaN	NaN	0.24994	1	8837	8837		22.126	0	1	1950.2			30927	3590	17792	18288	24699	24699					0.11156995867736441
WPDDLQNHTF	10	Unmodified	_WPDDLQNHTF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.78582684035	2	636.785827	1271.5571	2.2458	0.0014301	-1.6097	-0.001025	0.63617	0.00040511	636.7843878663456	23.2	0.16879	23.2	23.103	23.272	0	1152	73	0.92775106	0.04405272	0.92775106	375.62668	0	17.83603						361	8	4	NaN	NaN	NaN	0.011581	1	18259	18259		69.233	50.115	1	67245			30928	5870	17793	18289	24700	24700					-0.06781551884409964
WPDDLQNHTF	10	Unmodified	_WPDDLQNHTF_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.78582684035	2	636.785827	1271.5571	2.0406	0.0012994	-0.66796	-0.00042535	1.3726	0.00087407	636.7848440334209	23.199	0.16892	23.186	23.114	23.283	-0.013294	1152	70	0.92775106	0.04221493	0.9262317	375.62668	0	17.09195						448	8	4	NaN	NaN	NaN	0.12314	1	17446	17446		42.779	24.545	1	70068			30929	5870	17793	18289	24701	24701					-0.06781551884409964
WPDELLDWL	9	Unmodified	_WPDELLDWL_					0	0	0			REV__nc|ENSG00000176909|Q6ZN01-3|MAMSTR	REV__nc|ENSG00000176909|Q6ZN01-3|MAMSTR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.7925892399501	2	593.792589	1185.57063	1.0889	0.00064661	-1.0839	-0.00064362	0.0050227	2.9824E-06	593.7924940331548	36.18	0.31319	36.181	36.084	36.397	0.0011024	1197	85	0.9001988	0.051455915	0.8986794	364.75522	0	20.84964						398	14	3	NaN	NaN	NaN	0.49999	1	15415	15415		15.175	5.5637	1	49831	+		30930	10759	17794	18290	24702	24702					-0.014736941051296526
WPDWALPRL	9	Unmodified	_WPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.3112835196	2	577.311284	1152.60801	1.0514	0.000607	-0.74818	-0.00043193	0.30326	0.00017507	577.3110327887254	31.308	0.31373	31.308	31.187	31.501	0	1209	85	0.892844	0.05150044	0.892844	361.89407	0	20.874542						562	14	4	NaN	NaN	NaN	0.097143	1	14896	14896		36.235	14.4	1	98201			30931	3765	17795	18291	24703	24703					0.037814419511278174
WPDWALPRL	9	Unmodified						0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.311284	1152.60801	0.98471	0.00056848	-1.3242	-0.0007645	-0.33954	-0.00019602	577.3103504468712	31.355	0.33785	31.35	31.205	31.543	-0.0050716	1206	97	0.894683	0.058851242	0.89316356	362.63947		23.854034	0.021081	-0.00030372	0.00015978	NaN	36.235	633	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104310			30932	3765	17795	18291							0.037814419511278174
WPENATLYQQL	11	Unmodified	_WPENATLYQQL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8380593761	2	681.838059	1361.66157	1.8441	0.0012574	-2.2304	-0.0015208	-0.38632	-0.00026341	681.8365964998197	27.857	0.3137	27.857	27.712	28.026	0	1101	91	0.95892316	0.054935455	0.95892316	387.97144	0	22.22638						586	14	3	NaN	NaN	NaN	0.057233	1	19699	19699		48.002	14.577	1	78607			30933	2577	17796	18292	24704	24704					-0.004798501276809475
WPENATLYQQL	11	Unmodified	_WPENATLYQQL_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.8380593761	2	681.838059	1361.66157	1.2254	0.00083555	-2.0354	-0.0013878	-0.80992	-0.00055223	681.8368754626325	27.856	0.33788	27.846	27.677	28.015	-0.009552	1101	88	0.95892316	0.053107142	0.9574037	387.97144	0	21.486664						618	15	3	NaN	NaN	NaN	0.14414	1	18791	18791		35.523	0	1	78305			30934	2577	17796	18292	24705	24705					-0.004798501276809475
WPFQGTIRL	9	Unmodified	_WPFQGTIRL_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.3112835196001	2	559.311284	1116.60801	1.7065	0.00095449	0.35873	0.00020064	2.0653	0.0011551	559.3127660195822	28.17	0.072416	28.17	28.146	28.219	0	1245	76	0.87076044	0.04600489	0.87076044	353.0775	0	18.654144						108	4	2	NaN	NaN	NaN	0.61852	1	13547	13547		4.7291	1.5175	1	12030			30935	4979	17797	18293	24706	24706					0.05437441951130495
WPFQGTIRL	9	Unmodified	_WPFQGTIRL_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.3112835196001	2	559.311284	1116.60801	1.233	0.00068965	0.65582	0.00036681	1.8889	0.0010565	559.8146167230389	28.194	0.1207	28.185	28.161	28.281	-0.0089779	1242	70	0.87260187	0.042324543	0.8710824	353.82416	0	17.161835						101	6	3	NaN	NaN	NaN	0.57723	1	13151	13151		6.4299	0.3396	1	8528.3			30936	4979	17797	18293	24707	24707					0.05437441951130495
WPHEDAAQF	9	Unmodified	_WPHEDAAQF_					0	0	0		nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	nc|ENSG00000135250|P78362|SRPK2	nc|ENSG00000135250|P78362|SRPK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7434307094	2	550.743431	1099.47231	1.5245	0.00083963	-0.79608	-0.00043844	0.72846	0.0004012	550.7431432446186	20.213	0.096275	20.198	20.174	20.271	-0.014141	1254	82	0.8652351	0.04977131	0.86371565	350.90375	0	20.18518						226	5	2	NaN	NaN	NaN	0.33629	1	12478	12478		16.584	1.1215	1	66338			30937	2925	17798	18294	24708	24708					-0.07344877630362134
WPHFKEIFML	10	Unmodified	_WPHFKEIFML_					0	0	0		ENST00000471992.1_1_17:27185141-27187568:+|nuORF;ENSG00000132591|ENST00000254928|ERAL1	ENST00000471992.1_1_17:27185141-27187568:+|nuORF	ENST00000471992.1_1_17:27185141-27187568:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.34955140035	2	674.349551	1346.68455	1.1673	0.00078715	6.7225	0.0045333	7.8898	0.0053205	674.3544444243806	21.151	0.072281	21.151	21.103	21.175	0	1080	40	0.9717421	0.023801506	0.9717421	393.20175	0	9.630951						56	4	2	NaN	NaN	NaN	0.68669	1	19503	19503		8.962	0.020377	1	5494.3			30938	2774	17799	18295	24709	24709					0.025074974560993724
WPKFFFDI	8	Unmodified	_WPKFFFDI_					0	0	0		XPOT|p.S473Qfs*9|1|0.4|ENSG00000184575|chr12:64425145-64425145|T/-|frameshift_variant;ENSG00000184575|ENST00000332707|XPOT	XPOT|p.S473Qfs*9|1|0.4|ENSG00000184575|chr12:64425145-64425145|T/-|frameshift_variant	XPOT|p.S473Qfs*9|1|0.4|ENSG00000184575|chr12:64425145-64425145|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.28420310185	2	550.284203	1098.55385	1.0392	0.00057188	5.077	0.0027938	6.1163	0.0033657	550.2871632567804	28.025	0.072407	28.016	27.968	28.04	-0.0089779	1248	67	0.8689189	0.04050839	0.86739945	352.40137	0	16.42868						95	4	2	NaN	NaN	NaN	0.75561	1	12458	12458		15.175	0.16249	1	21924			30939	5358	17800	18296	24710	24710					0.008518497995510188
WPLAFGSG	8	Unmodified	_WPLAFGSG_					0	0	0		ENST00000481464.5_1_1:19927449-19952892:+|nuORF;ENST00000486890.5_1_1:19927449-19950128:+|nuORF;ENSG00000173436|ENST00000322753|MICOS10;ENST00000498642.5_1_1:19923539-19952083:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	834.4144654999002	1	834.414465	833.407189	1.7988	0.0015009	-1.4463	-0.0012068	0.3525	0.00029413	834.412932265311	27.952	0.072388	27.943	27.919	27.991	-0.009552	498	31	1.3232021	0.017930984	1.3216827	269.38104	0	3.6504517						47	4	2	NaN	NaN	NaN	0.84727	1	5061	5061		1.2418	0	1	2837.6			30940	4891	17801	18297	24711	24711					-0.016178273655100384
WPLEEVVL	8	Unmodified	_WPLEEVVL_					0	0	0		nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	nc|ENSG00000089159|P49023-3|PXN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	984.5400599440001	1	984.54006	983.532783	1.0972	0.0010802	0.83435	0.00082145	1.9315	0.0019017	984.5406490725454	33.285	0.12064	33.283	33.235	33.355	-0.0024757	201	79	1.4997677	0.04614687	1.4982482	304.56964	0	9.371399						154	6	2	NaN	NaN	NaN	0.40747	1	7840	7840		36.036	11.075	1	18549			30941	7916	17802	18298	24712	24712					0.04035839700043198
WPLGLGIL	8	Unmodified	_WPLGLGIL_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	868.5291013272	1	868.529101	867.521825	1.873	0.0016267	-1.5187	-0.001319	0.35429	0.00030771	868.527632228927	36.517	0.072395	36.519	36.494	36.567	0.0016785	369	34	1.4001206	0.01963079	1.3986012	284.85846	0	3.993927						54	4	2	NaN	NaN	NaN	0.60626	1	5495	5495		24.901	0	1	3703.5	+		30942	10947	17803	18299	24713	24713					0.08276482116411898
WPLKDLTL	8	Unmodified	_WPLKDLTL_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.2894854449999	2	493.289485	984.564418	1.5724	0.00077563	-1.7553	-0.00086586	-0.18291	-9.0229E-05	493.2882227068547	27.639	0.19307	27.639	27.543	27.736	0	1317	43	0.8265074	0.02584505	0.8265074	335.68118	0	10.496796						198	9	3	NaN	NaN	NaN	0.65542	1	8047	8047		21.835	1.3863	1	24392			30943	5099	17804	18300	24714	24714					0.07151832453973839
WPLKDLTL	8	Unmodified						0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000498817.5_1_3:46713372-46716156:-|nuORF;ENST00000473484.1_1_3:46713038-46716081:-|nuORF;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.289485	984.564418	0.60368	0.00029779	-1.1243	-0.00055462	-0.52065	-0.00025683	493.28836381046875	27.663	0.19301	27.653	27.581	27.774	-0.009552	1314	34	0.8283535	0.020307899	0.8268341	336.43097		8.247955	0.0068899	0.00034165	0.00016337	NaN	21.835	184	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24486			30944	5099	17804	18300							0.07151832453973839
WPLLEILLTR	10	Unmodified	_WPLLEILLTR_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.3844484627	2	627.384448	1252.75434	0.92448	0.00058001	-4.5339	-0.0028445	-3.6094	-0.0022645	627.8832252613399	40.561	0.14418	40.561	40.512	40.657	0	1203	64	0.8965218	0.038627446	0.8965218	363.04114	0	15.641937						250	7	4	NaN	NaN	NaN	0.72631	1	17851	17851		6.2502	0.55606	1	39983	+		30945	9538	17805	18301	24715	24715					0.1380769939635229
WPLLEILLTR	10	Unmodified						0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.384448	1252.75434	0.92448	0.00058001	-4.5339	-0.0028445	-3.6094	-0.0022645	627.8832252613399	40.561	0.14418	40.561	40.512	40.657	0	1203	64	0.8965218	0.038627446	0.8965218	363.04114		15.641937	-0.05043	-0.00097218	0.00075972	NaN	6.2502	250	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39983	+		30946	9538	17805	18301							0.1380769939635229
WPLLEILLTR	10	Unmodified						0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	627.384448	1252.75434	0.74075	0.00046473	-2.7572	-0.0017298	-2.0164	-0.0012651	627.3829877916912	40.655	0.14396	40.661	40.637	40.781	0.0067558	1203	67	0.8965218	0.04046464	0.89500237	363.04114		16.385895	0.05043	0.0012571	-0.00075972	NaN	6.2502	210	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43413	+		30947	9538	17805	18301							0.1380769939635229
WPNWRSQPP	9	Unmodified	_WPNWRSQPP_					0	0	0			REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2883397395501	2	584.28834	1166.56213	1.6096	0.00094047	0.060581	3.5397E-05	1.6702	0.00097586	584.2882481785804	26.504	0.19303	26.494	26.47	26.663	-0.010645	987	208	1.0283957	0.12586975	1.0268762	416.77792	0	51.01123						821	9	4	NaN	NaN	NaN	0.67082	1	14826	14826		1.7022	0.19679	1	141690	+		30948	12179	17806	18302	24716	24716					-0.014492032310954528
WPNWRSQPP	9	Unmodified						0	0	0			REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.28834	1166.56213	1.6096	0.00094047	0.060581	3.5397E-05	1.6702	0.00097586	584.2882481785804	26.504	0.19303	26.494	26.47	26.663	-0.010645	987	208	1.0283957	0.12586975	1.0268762	416.77792		51.01123	-0.0054718	0.00078579	0.00015257	NaN	1.7022	821	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141690	+		30949	12179	17806	18302							-0.014492032310954528
WPPGAGGG	8	Unmodified	_WPPGAGGG_					0	0	0		ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3256504926002	1	698.32565	697.318374	1.2642	0.00088282	1.5711	0.0010972	2.8353	0.00198	698.3270158587449	34.685	0.048264	34.684	34.66	34.708	-0.0006485	1083	70	0.9699114	0.042105794	0.96839195	198.08115	0	8.599106						78	3	2	NaN	NaN	NaN	0.84945	1	3108	3108		0	0	1	4626.4			30950	6542	17807	18303	24717	24717					-0.042392426051833354
WPSLCWKI	8	Unmodified	_WPSLCWKI_					0	0	0		ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5335347781	1	1032.53353	1031.52626	1.4694	0.0015172	0.42535	0.00043918	1.8947	0.0019564	1032.531847323189	36.421	0.36123	36.422	36.326	36.687	0.0016747	111	73	1.5529068	0.042466283	1.5513873	315.1582	0	8.618408						398	16	2	NaN	NaN	NaN	0.6053	1	9636	9636		24.961	0	1	34523			30951	2476	17808	18304	24718	24718					0.01175623267681658
WPSLLGDML	9	Unmodified	_WPSLLGDML_					0	0	0		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5230296713	1	1031.52303	1030.51575	1.5696	0.001619	5.9465	0.0061339	7.516	0.007753	1032.533439129678	36.422	0.31349	36.422	36.229	36.543	0	138	94	1.5369828	0.05486679	1.5369828	311.93048	0	11.135223						545	14	3	NaN	NaN	NaN	0.028349	1	9797	9797		61.271	34.54	1	46270			30952	3260	17809	18305	24719	24719					0.0017159582259864692
WPSLLGDML	9	Oxidation (M)	_WPSLLGDM(Oxidation (M))L_		WPSLLGDM(1)L		WPSLLGDM(73)L	0	0	1		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1047.5179442934	1	1047.51794	1046.51067	1.7223	0.0018042	1.9731	0.0020668	3.6954	0.003871	1047.5203225825617	32.345	0.24131	32.345	32.177	32.418	0	132	88	1.5405227	0.05133784	1.5405227	312.58582	0	10.416931						370	11	3	NaN	NaN	NaN	0.019103	1	10478	10478		73.133	31.348	1	44878			30953	3260	17809	18306	24720	24720		363			-0.010727080400329214
WPSLLGDML	9	Oxidation (M)	_WPSLLGDM(Oxidation (M))L_		WPSLLGDM(1)L		WPSLLGDM(98)L	0	0	1		ENST00000559190.5_1_15:50545740-50555509:-|nuORF;ENST00000558679.1_1_15:50546296-50557931:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	ENST00000559190.5_1_15:50545740-50555509:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1047.5179442934	1	1047.51794	1046.51067	1.0215	0.00107	1.6114	0.0016879	2.6329	0.002758	1047.5194490778886	32.32	0.21721	32.316	32.172	32.389	-0.0037613	129	79	1.5422925	0.04602456	1.540773	312.94492	0	9.338806						336	10	3	NaN	NaN	NaN	0.0072287	1	10267	10267		98.041	59.123	1	42771			30954	3260	17809	18306	24721	24721		363			-0.010727080400329214
WPSTQPSAYPY	11	Unmodified	_WPSTQPSAYPY_					0	0	0			REV__nc|ENSG00000131196|O95644-8|NFATC1	REV__nc|ENSG00000131196|O95644-8|NFATC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.7984028993501	2	648.798403	1295.58225	2.3428	0.00152	1.2469	0.00080898	3.5897	0.002329	648.7995218586955	15.724	0.095798	15.711	15.687	15.783	-0.012611	1122	37	0.9460945	0.021997869	0.9445751	382.9772	0	8.904694						75	5	3	NaN	NaN	NaN	0.71564	1	17856	17856		6.4299	0.17972	1	4640.2	+		30955	9512	17810	18307	24722	24722					-0.05371497081796406
WPSTQPSAYPY	11	Unmodified						0	0	0			REV__nc|ENSG00000131196|O95644-8|NFATC1	REV__nc|ENSG00000131196|O95644-8|NFATC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	648.798403	1295.58225	1.7346	0.0011254	2.2045	0.0014303	3.9392	0.0025557	648.7987029030555	15.702	0.14402	15.702	15.678	15.822	0	1119	34	0.9479278	0.020165801	0.9479278	383.7193		8.163086	-0.00459	0.00057695	0.0016763	NaN	6.4299	92	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6796.3	+		30956	9512	17810	18307							-0.05371497081796406
WPSTQPSAYPY	11	Unmodified						0	0	0			REV__nc|ENSG00000131196|O95644-8|NFATC1	REV__nc|ENSG00000131196|O95644-8|NFATC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	648.798403	1295.58225	2.3428	0.00152	1.2469	0.00080898	3.5897	0.002329	648.7995218586955	15.724	0.095798	15.711	15.687	15.783	-0.012611	1122	37	0.9460945	0.021997869	0.9445751	382.9772		8.904694	0.00459	-0.00066566	-0.0016763	NaN	6.4299	75	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4640.2	+		30957	9512	17810	18307							-0.05371497081796406
WPTHEVVL	8	Unmodified	_WPTHEVVL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.76363483525	2	490.763635	979.512717	1.0298	0.00050537	-2.2195	-0.0010893	-1.1898	-0.00058391	490.76288410746525	22.766	0.14454	22.752	22.704	22.848	-0.01354	1320	73	0.824661	0.044301033	0.8231416	334.95508	0	17.993866						296	7	3	NaN	NaN	NaN	0.49126	1	7703	7703		31.561	12.276	1	46307			30958	850	17811	18308	24723	24723					0.022140887600926362
WPTHEVVL	8	Unmodified						0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	490.763635	979.512717	2.0049	0.00098393	-3.9636	-0.0019452	-1.9587	-0.00096126	490.7623700233704	22.742	0.21707	22.742	22.645	22.863	0	1323	79	0.8228144	0.04799795	0.8228144	334.20505		19.495483	-0.0050005	-0.00093681	-0.00016357	NaN	31.561	348	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49985			30959	850	17811	18308							0.022140887600926362
WPVDLVEKL	9	Unmodified	_WPVDLVEKL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.81332468205	2	549.813325	1097.6121	1.7503	0.00096231	0.13431	7.3844E-05	1.8846	0.0010362	549.813514898726	28.701	0.33787	28.701	28.629	28.967	0	1218	67	0.8873258	0.040473342	0.8873258	359.87036	0	16.414673						525	15	4	NaN	NaN	NaN	0.006197	1	12760	12760		100.15	52.144	1	406820			30960	1254	17812	18309	24724	24724					0.06719486654174034
WPVDLVEKL	9	Unmodified	_WPVDLVEKL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.81332468205	2	549.813325	1097.6121	1.6311	0.00089682	-0.1134	-6.2349E-05	1.5177	0.00083447	549.8129094678848	28.701	0.24131	28.692	28.644	28.885	-0.0083504	1218	61	0.8873258	0.036801934	0.8858064	359.8704	0	14.925659						537	11	5	NaN	NaN	NaN	0.0014219	1	12428	12428		112.76	60.003	1	387200			30961	1254	17812	18309	24725	24725					0.06719486654174034
WPVGGDSRF	9	Unmodified	_WPVGGDSRF_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.7485160873	2	510.748516	1019.48248	1.7632	0.00090054	-1.3246	-0.00067656	0.43853	0.00022398	510.74803620637937	21.32	0.26477	21.32	21.151	21.416	0	1296	55	0.8394264	0.033214986	0.8394264	340.76724	0	13.483704						316	12	3	NaN	NaN	NaN	0.059222	1	9338	9338		42.995	3.536	1	48706			30962	3342	17813	18310	24726	24726					-0.026482699051030067
WPVGGDSRF	9	Unmodified	_WPVGGDSRF_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.7485160873	2	510.748516	1019.48248	1.2122	0.00061911	0.27759	0.00014178	1.4898	0.00076089	510.7488644655802	21.368	0.33699	21.354	21.162	21.499	-0.014006	1296	55	0.8394264	0.03321141	0.83790696	340.7672	0	13.482208						344	15	3	NaN	NaN	NaN	0.27507	1	9150	9150		20.513	2.733	1	63534			30963	3342	17813	18310	24727	24727					-0.026482699051030067
WPWSTNYLF	9	Unmodified	_WPWSTNYLF_					0	0	0			REV__ENST00000530831.1_1_11:71208417-71209628:+|nuORF	REV__ENST00000530831.1_1_11:71208417-71209628:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.2874740723	2	607.287474	1212.5604	1.0888	0.00066119	6.7809	0.004118	7.8697	0.0047792	607.2926934451917	29.305	0.12064	29.305	29.232	29.353	0	1158	100	0.92408	0.060588896	0.92408	374.33585	0	24.543976						242	6	3	NaN	NaN	NaN	0.47587	1	16788	16788		10.605	1.643	1	41851	+		30964	10661	17814	18311	24728	24728					-0.03738257039731252
WPYRRPRRP	9	Unmodified	_WPYRRPRRP_					0	0	0			REV__ENST00000526510.5_1_11:67168691-67168991:-|nuORF	REV__ENST00000526510.5_1_11:67168691-67168991:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.36524738985	2	642.365247	1282.71594	1.9023	0.001222	-6.3783	-0.0040972	-4.4759	-0.0028752	642.360935067499	41.039	0.048088	41.046	41.046	41.094	0.0074959	1050	34	0.9900381	0.020113647	0.9885187	400.80792	0	8.142853						73	3	3	NaN	NaN	NaN	0.68748	1	17654	17654		0.27539	0	1	4957.6	+		30965	12626	17815	18312	24729	24729					0.08589251325042824
WQENTGGQ	8	Unmodified	_WQENTGGQ_					0	0	0			REV__ENSG00000074842|ENST00000262947|MYDGF	REV__ENSG00000074842|ENST00000262947|MYDGF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	919.3904355939002	1	919.390436	918.383159	2.0569	0.0018911	1.7412	0.0016008	3.7981	0.003492	919.3911093556579	26.07	0.1207	26.07	26.022	26.143	0	399	58	1.382264	0.033943772	1.382264	280.9823	0	6.899994						145	6	2	NaN	NaN	NaN	0.26128	1	6379	6379		45.165	2.8473	1	16337	+		30966	8606	17816	18313	24730	24730					-0.07929712589839255
WQENTGGQ	8	Unmodified						0	0	0			REV__ENSG00000074842|ENST00000262947|MYDGF	REV__ENSG00000074842|ENST00000262947|MYDGF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	919.390436	918.383159	2.0569	0.0018911	1.7412	0.0016008	3.7981	0.003492	919.3911093556579	26.07	0.1207	26.07	26.022	26.143	0	399	58	1.382264	0.033943772	1.382264	280.9823		6.899994	0.005674	-0.00055186	0.00075972	NaN	45.165	145	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16337	+		30967	8606	17816	18313							-0.07929712589839255
WQENTGGQ	8	Unmodified						0	0	0			REV__ENSG00000074842|ENST00000262947|MYDGF	REV__ENSG00000074842|ENST00000262947|MYDGF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	919.390436	918.383159	1.9805	0.0018208	3.0157	0.0027726	4.9962	0.0045934	919.3924004436936	26.07	0.1207	26.059	26.035	26.156	-0.011137	399	52	1.382264	0.030370712	1.3807446	280.9823		6.1736755	-0.005674	0.0006199	-0.00075972	NaN	45.165	175	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15263	+		30968	8606	17816	18313							-0.07929712589839255
WQGAGGGG	8	Unmodified	_WQGAGGGG_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	689.3001640236002	1	689.300164	688.292888	1.0132	0.00069842	-0.8373	-0.00057715	0.17593	0.00012127	689.299131358695	42.217	0.11994	42.226	42.154	42.274	0.0089951	756	37	1.1683017	0.021713614	1.1667823	238.65785	0	4.4355927						77	6	2	NaN	NaN	NaN	0.84945	1	2917	2917		0	0	1	5500.6	+		30969	12362	17817	18314	24731	24731					-0.0637271712760139
WQHGSGPAL	9	Unmodified	_WQHGSGPAL_					0	0	0			REV__ENST00000533478.5_1_16:81171088-81180967:-|nuORF	REV__ENST00000533478.5_1_16:81171088-81180967:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	952.4635409575002	1	952.463541	951.456264	1.5602	0.001486	3.2603	0.0031053	4.8205	0.0045914	952.4667319734068	24.912	0.096516	24.9	24.875	24.972	-0.012392	279	67	1.4535767	0.039142847	1.4520572	295.32678	0	7.952759						105	5	2	NaN	NaN	NaN	0.31737	1	6986	6986		17.799	1.3823	1	11178	+		30970	12658	17818	18315	24732	24732					-0.02140539076560799
WQHGSGPAL	9	Unmodified						0	0	0			REV__ENST00000533478.5_1_16:81171088-81180967:-|nuORF	REV__ENST00000533478.5_1_16:81171088-81180967:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	952.463541	951.456264	1.5602	0.001486	3.2603	0.0031053	4.8205	0.0045914	952.4667319734068	24.912	0.096516	24.9	24.875	24.972	-0.012392	279	67	1.4535767	0.039142847	1.4520572	295.32678		7.952759	-0.0062901	-0.0004016	-0.00075972	NaN	17.799	105	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11178	+		30971	12658	17818	18315							-0.02140539076560799
WQHKLLAEQ	9	Unmodified	_WQHKLLAEQ_					0	0	0			REV__ENST00000487009.5_1_1:222753140-222761905:-|nuORF	REV__ENST00000487009.5_1_1:222753140-222761905:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	384.87685726243336	3	384.876857	1151.60874	1.1414	0.00043928	-3.9085	-0.0015043	-2.7672	-0.001065	384.8752833039253	12.364	0.11992	12.364	12.292	12.412	0	1446	49	0.7469324	0.029681563	0.7469324	454.12817	0	18.046143						144	6	2	NaN	NaN	NaN	0.56671	1	14868	14868		6.4299	0.98	1	15916	+		30972	9868	17819	18316	24733	24733					0.03900236600179596
WQHKLLAEQ	9	Unmodified						0	0	0			REV__ENST00000487009.5_1_1:222753140-222761905:-|nuORF	REV__ENST00000487009.5_1_1:222753140-222761905:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	384.876857	1151.60874	1.1414	0.00043928	-3.9085	-0.0015043	-2.7672	-0.001065	384.8752833039253	12.364	0.11992	12.364	12.292	12.412	0	1446	49	0.7469324	0.029681563	0.7469324	454.12817		18.046143	0	0	0	NaN	6.4299	144	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15916	+		30973	9868	17819	18316							0.03900236600179596
WQKRSRTCTN	10	Unmodified	_WQKRSRTCTN_					0	0	0		UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	427.21565563600006	3	427.215656	1278.62514	1.0317	0.00044078	6.1942	0.0026463	7.226	0.003087	427.2182282303253	22.621	0.12059	22.607	22.559	22.68	-0.01354	1383	40	0.7858409	0.024062753	0.7843215	477.22302	0	14.612732						117	6	3	NaN	NaN	NaN	0.73444	1	17573	17573		2.7042	0	1	12037			30974	3927	17820	18317	24734	24734					-0.003030055053613978
WQKRYDSL	8	Unmodified	_WQKRYDSL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85;ENST00000468163.1_1_1:26597553-26598598:+|nuORF;nc|ENSG00000130695|Q6P2H3-3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.2827230454001	2	548.282723	1094.55089	0.55405	0.00030378	9.186	0.0050365	9.74	0.0053403	549.2898957192103	31.428	0.14481	31.428	31.356	31.501	0	1224	55	0.883646	0.03312534	0.883646	358.39035	0	13.434998						170	7	3	NaN	NaN	NaN	0.84727	1	12612	12612		1.2418	0	1	8873.8			30975	2657	17821	18318	24735	24735					0.00739974674752375
WQLKLSVQGER	11	Unmodified	_WQLKLSVQGER_					0	0	0			REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.37514337415	2	672.375143	1342.73573	0.84336	0.00056705	3.678	0.002473	4.5214	0.0030401	672.3776910067894	40.198	0.16825	40.204	40.156	40.324	0.0060501	1182	52	0.9093879	0.03122592	0.90786844	367.982	0	12.635498						180	8	3	NaN	NaN	NaN	0.76654	1	18592	18592		2.5994	0.67481	1	18605	+		30976	12885	17822	18319	24736	24736					0.07807537754479199
WQLKLSVQGER	11	Unmodified	_WQLKLSVQGER_					0	0	0			REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.37514337415	2	672.375143	1342.73573	1.2491	0.00083985	3.3768	0.0022705	4.6259	0.0031103	672.8793408435563	40.102	0.072208	40.108	40.06	40.132	0.0060463	1182	34	0.9093879	0.020211518	0.90786844	367.982	0	8.178558						54	4	2	NaN	NaN	NaN	0.76654	1	18593	18593		2.5994	0.67481	1	5199.7	+		30977	12885	17822	18319	24737	24737					0.07807537754479199
WQLKLSVQGER	11	Unmodified						0	0	0			REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	REV__ENST00000586281.1_1_19:5664162-5664471:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	672.375143	1342.73573	0.84336	0.00056705	3.678	0.002473	4.5214	0.0030401	672.3776910067894	40.198	0.16825	40.204	40.156	40.324	0.0060501	1182	52	0.9093879	0.03122592	0.90786844	367.982		12.635498	0.0021302	0.00014084	0.00015899	NaN	2.5994	180	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18605	+		30978	12885	17822	18319							0.07807537754479199
WQNVDEKTWDD	11	Unmodified	_WQNVDEKTWDD_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	718.30986304265	2	718.309863	1434.60517	1.7864	0.0012832	-6.203	-0.0044557	-4.4166	-0.0031725	718.3036349593981	22.958	0.048206	22.945	22.945	22.993	-0.01354	1074	37	0.9754029	0.021962345	0.97388345	394.4373	0	8.881195						52	3	2	NaN	NaN	NaN	0.73057	1	19334	19334		5.4499	1.0368	1	4863.8	+		30979	11263	17823	18320	24738	24738					-0.0947452275499927
WQQGTTTDR	9	Unmodified	_WQQGTTTDR_					0	0	0		ENST00000497048.5_1_9:110250523-110250694:-|nuORF	ENST00000497048.5_1_9:110250523-110250694:-|nuORF	ENST00000497048.5_1_9:110250523-110250694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.84047175613324	3	364.840472	1091.49959	2.2771	0.00083079	3.4467	0.0012575	5.7239	0.0020883	365.1754017642668	25.78	0.1448	25.769	25.696	25.841	-0.0116	1542	52	0.6874725	0.031637847	0.6859531	418.2488	0	19.248047						199	7	4	NaN	NaN	NaN	0.56671	1	12138	12138		3.9281	1.3676	1	16171			30980	7296	17824	18321	24739	24739					-0.04250394089967813
WQTKLSRSR	9	Unmodified	_WQTKLSRSR_					0	0	0			REV__ENST00000318443.9_1_15:73976775-73994724:+|nuORF	REV__ENST00000318443.9_1_15:73976775-73994724:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.8877562997334	3	387.887756	1160.64144	1.3042	0.00050588	8.1097	0.0031457	9.4139	0.0036515	387.89137911926247	15.174	0.16821	15.174	15.077	15.246	0	1461	34	0.7376554	0.020416021	0.7376554	448.44653	0	12.411652						114	8	2	NaN	NaN	NaN	0.51576	1	15185	15185		5.4499	1.201	1	12568	+		30981	11711	17825	18322	24740	24740					0.06754443723048098
WQWGQELLELC	11	Unmodified	_WQWGQELLELC_					0	0	0		ENST00000521746.5_1_8:38758951-38793551:+|nuORF	ENST00000521746.5_1_8:38758951-38793551:+|nuORF	ENST00000521746.5_1_8:38758951-38793551:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	702.8344624421502	2	702.834462	1403.65437	1.1397	0.00080101	-4.2799	-0.003008	-3.1402	-0.002207	702.8315186910752	24.212	0.12064	24.199	24.151	24.272	-0.012749	1092	67	0.9644182	0.040290296	0.96289873	390.07733	0	16.296204						152	6	3	NaN	NaN	NaN	0.64343	1	19147	19147		11.17	1.5587	1	9760.8			30982	7401	17826	18323	24741	24741					-0.03130905999728384
WRALQHDC	8	Unmodified	_WRALQHDC_					0	0	0			REV__ENSG00000177854|ENST00000369982|TMEM187	REV__ENSG00000177854|ENST00000369982|TMEM187	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.74016812645	2	514.740168	1027.46578	1.2329	0.00063462	5.8127	0.002992	7.0456	0.0036266	514.7436344086663	34.733	0.12045	34.732	34.708	34.828	-0.0006485	1296	40	0.8394264	0.02398467	0.83790696	340.73193	0	9.735626						83	6	2	NaN	NaN	NaN	0.77489	1	9462	9462		12.588	0.53918	1	8564.7	+		30983	10777	17827	18324	24742	24742					-0.046850940627109594
WRASCLRIF	9	Unmodified	_WRASCLRIF_					0	0	0		ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.31076059085	2	576.310761	1150.60697	1.591	0.00091693	-5.7965	-0.0033406	-4.2054	-0.0024236	576.3072683338145	38.513	0.096245	38.517	38.493	38.59	0.0040245	1191	31	0.90387505	0.018379092	0.9023556	366.3728	0	7.449707						76	5	2	NaN	NaN	NaN	0.18779	1	14334	14334		26.115	0	1	5949.2			30984	7060	17828	18325	24743	24743					0.03768904310572907
WRKEFKEQWMK	11	Unmodified	_WRKEFKEQWMK_					0	0	0		GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant;nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	798.41120291695	2	798.411203	1594.80785	1.7419	0.0013907	-6.4042	-0.0051132	-4.6623	-0.0037225	798.4052073812085	27.374	0.048311	27.374	27.35	27.398	0	939	37	1.0575624	0.021853805	1.0575624	427.25073	0	8.828857						69	3	3	NaN	NaN	NaN	0.76937	1	20740	20740		2.1026	0.59717	1	4746			30985	1040	17829	18326	24744	24744					0.03424128836559248
WRKWKQLSR	9	Unmodified	_WRKWKQLSR_					0	0	0		ENST00000545096.1_1_9:139981559-139982655:+|nuORF;ENSG00000177239|ENST00000371589|MAN1B1	ENST00000545096.1_1_9:139981559-139982655:+|nuORF	ENST00000545096.1_1_9:139981559-139982655:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1287.7432850532	1	1287.74329	1286.73601	1.2992	0.0016731	5.8143	0.0074873	7.1135	0.0091603	1287.7519299647638	41.665	0.072044	41.673	41.601	41.673	0.0082588	648	103	1.2333171	0.06124592	1.2317977	249.64233	0	12.39711						115	4	2	NaN	NaN	NaN	0.67989	1	17720	17720		0.92586	0.23471	1	6928.5			30986	5069	17830	18327	24745	24745					0.10411002265027491
WRLRKNFFYFY	11	Unmodified	_WRLRKNFFYFY_					0	0	0		ENSG00000184785|ENST00000330288|SMIM10	ENSG00000184785|ENST00000330288|SMIM10	ENSG00000184785|ENST00000330288|SMIM10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	547.2892607887668	3	547.289261	1638.84595	2.4657	0.0013494	-11.257	-0.0061609	-8.7914	-0.0048115	547.6160709352987	17.498	0.072023	17.484	17.46	17.532	-0.013569	1398	43	0.77658504	0.025917947	0.7750656	470.49432	0	15.702393						39	4	2	NaN	NaN	NaN	0.78125	1	19767	19767		0.023298	0	1	3182.8			30987	5372	17831	18328	24746	24746					0.05208382813566459
WRPRGCRLL	9	Unmodified	_WRPRGCRLL_					0	0	0		ENST00000324096.8_1_19:17836915-17837251:+|nuORF	ENST00000324096.8_1_19:17836915-17837251:+|nuORF	ENST00000324096.8_1_19:17836915-17837251:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.8296518357502	2	578.829652	1155.64475	0.94921	0.00054943	-2.0198	-0.0011691	-1.0706	-0.0006197	578.8286006869993	35.458	0.096451	35.458	35.41	35.506	0	1218	37	0.8873258	0.022076428	0.8873258	359.64624	0	8.947876						88	5	2	NaN	NaN	NaN	0.094712	1	15021	15021		36.586	5.9763	1	15746			30988	6487	17832	18329	24747	24747					0.07315415296056926
WRPRGCRLL	9	Unmodified						0	0	0		ENST00000324096.8_1_19:17836915-17837251:+|nuORF	ENST00000324096.8_1_19:17836915-17837251:+|nuORF	ENST00000324096.8_1_19:17836915-17837251:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.829652	1155.64475	0.76014	0.00043999	-2.4056	-0.0013924	-1.6455	-0.00095244	579.3299960867523	35.649	0.217	35.65	35.553	35.77	0.00052643	1215	40	0.8891654	0.023914814	0.88764596	360.39185		9.693024	0.096024	-0.00030326	0.00016008	NaN	36.586	167	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19386			30989	6487	17832	18329							0.07315415296056926
WRPTSSTCCTA	11	Unmodified	_WRPTSSTCCTA_					0	0	0			REV__HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant	REV__HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7604402193	2	606.76044	1211.50633	1.4399	0.00087369	-3.4248	-0.002078	-1.9848	-0.0012043	606.7585141189552	25.491	0.19301	25.479	25.455	25.648	-0.012011	1209	52	0.892844	0.031259656	0.8913246	361.686	0	12.663116						168	9	2	NaN	NaN	NaN	0.76654	1	16080	16080		2.5994	0.13793	1	22323	+		30990	13020	17833	18330	24748	24748					-0.0909654052525184
WRPVVEKLLL	10	Unmodified	_WRPVVEKLLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1252.7776048740002	1	1252.7776	1251.77033	1.9429	0.002434	5.3429	0.0066935	7.2858	0.0091275	1252.7852872044439	40.152	0.19249	40.152	40.104	40.296	0	72	79	1.5758814	0.0459224	1.5758814	319.07736	0	9.298157						342	9	3	NaN	NaN	NaN	0.77928	1	17827	17827		0.69115	0	1	71200			30991	2053	17834	18331	24749	24749					0.15451405633280046
WRPVVEKLLL	10	Unmodified						0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1252.7776	1251.77033	1.3628	0.0017073	5.7823	0.0072439	7.145	0.0089511	1252.785411586004	40.27	0.21632	40.276	40.228	40.444	0.0060463	69	67	1.5776473	0.038853288	1.5761279	319.43494		7.8668213	0.062173	0.00030721	0.00012326	NaN	0.69115	376	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47337			30992	2053	17834	18331							0.15451405633280046
WRRALYNFN	9	Unmodified	_WRRALYNFN_					0	0	0			REV__ENSG00000112293|ENST00000230036|GPLD1	REV__ENSG00000112293|ENST00000230036|GPLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.3227138731501	2	620.322714	1238.63087	1.4673	0.00091017	-8.2268	-0.0051032	-6.7595	-0.0041931	620.3173018571381	21.874	0.16866	21.874	21.802	21.97	0	1125	40	0.9442611	0.02384001	0.9442611	382.4204	0	9.65509						109	8	3	NaN	NaN	NaN	0.61413	1	17496	17496		4.9097	2.0203	1	7623.3	+		30993	9118	17835	18332	24750	24750					0.021104610686052183
WRRALYNFN	9	Unmodified						0	0	0			REV__ENSG00000112293|ENST00000230036|GPLD1	REV__ENSG00000112293|ENST00000230036|GPLD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	620.322714	1238.63087	1.4673	0.00091017	-8.2268	-0.0051032	-6.7595	-0.0041931	620.3173018571381	21.874	0.16866	21.874	21.802	21.97	0	1125	40	0.9442611	0.02384001	0.9442611	382.4204		9.65509	-0.065249	0.0016826	0.00075972	NaN	4.9097	109	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7623.3	+		30994	9118	17835	18332							0.021104610686052183
WRRALYNFN	9	Unmodified						0	0	0			REV__ENSG00000112293|ENST00000230036|GPLD1	REV__ENSG00000112293|ENST00000230036|GPLD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.322714	1238.63087	0.77974	0.00048369	-10.362	-0.0064275	-9.5818	-0.0059438	620.316050462924	22.018	0.16856	22.004	21.908	22.077	-0.013895	1125	70	0.9442611	0.04219216	0.94274163	382.42044		17.087585	0.065249	-0.00096591	-0.00075972	NaN	4.9097	203	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14882	+		30995	9118	17835	18332							0.021104610686052183
WRRDFVYY	8	Unmodified	_WRRDFVYY_					0	0	0			REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	REV__ENST00000474433.5_1_7:105254161-105283525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.7985402851001	2	602.79854	1203.58253	1.2781	0.00077042	-2.2393	-0.0013498	-0.96121	-0.00057941	602.7973615376047	26.311	0.1689	26.3	26.276	26.445	-0.011135	1008	118	1.0156195	0.071174204	1.0141001	411.45215	0	28.834412						460	8	3	NaN	NaN	NaN	0.84876	1	15925	15925		0.39566	0.12027	1	57739	+		30996	9950	17836	18333	24751	24751					-0.011120325712909107
WRRPVPIL	8	Unmodified	_WRRPVPIL_					0	0	0		ENST00000290649.9_2_16:56396705-56396813:-|nuORF	ENST00000290649.9_2_16:56396705-56396813:-|nuORF	ENST00000290649.9_2_16:56396705-56396813:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8243611051001	2	518.824361	1035.63417	1.5956	0.00082784	-2.3283	-0.001208	-0.73271	-0.00038015	518.8232907748281	22.91	0.26508	22.896	22.824	23.089	-0.01354	1263	52	0.85970795	0.03132391	0.8581885	348.92807	0	12.713379						374	12	4	NaN	NaN	NaN	0.30832	1	9833	9833		41.46	5.2252	1	106360			30997	6384	17837	18334	24752	24752					0.11777755913271903
WRRRELWFWWR	11	Unmodified	_WRRRELWFWWR_					0	0	0		ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	888.97094226935	2	888.970942	1775.92733	1.6117	0.0014328	2.2169	0.0019707	3.8286	0.0034035	888.9731964171374	28.701	0.048262	28.692	28.668	28.716	-0.0083504	867	64	1.1012185	0.038164258	1.099699	444.49673	0	15.404663						85	3	3	NaN	NaN	NaN	0.78138	1	19838	19838		0	0	1	5282.9			30998	6272	17838	18335	24753	24753					0.07040503296138922
WRRRLVHMR	9	Unmodified	_WRRRLVHMR_					0	0	0			REV__nc|ENSG00000171004|Q96MM7|HS6ST2	REV__nc|ENSG00000171004|Q96MM7|HS6ST2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3803745253001	2	655.380375	1308.7462	0.65547	0.00042958	1.7435	0.0011427	2.399	0.0015722	655.3812869631281	32.996	0.21703	32.993	32.825	33.042	-0.0024757	1005	49	1.0174452	0.029204369	1.0159258	411.81613	0	11.820618						119	10	2	NaN	NaN	NaN	0.68801	1	18081	18081		0.23014	0	1	13924	+		30999	10608	17839	18336	24754	24754					0.10417286718620744
WRRRLVHMR	9	Unmodified						0	0	0			REV__nc|ENSG00000171004|Q96MM7|HS6ST2	REV__nc|ENSG00000171004|Q96MM7|HS6ST2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	655.380375	1308.7462	0.49951	0.00032737	3.2389	0.0021227	3.7385	0.0024501	655.3824272723378	33.311	0.14481	33.311	33.262	33.407	0	1011	52	1.0137935	0.031038046	1.0137935	410.33807		12.562775	0.15868	0.00093032	-0.0010661	NaN	0.23014	123	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10265	+		31000	10608	17839	18336							0.10417286718620744
WRRRLVHMR	9	Unmodified						0	0	0			REV__nc|ENSG00000171004|Q96MM7|HS6ST2	REV__nc|ENSG00000171004|Q96MM7|HS6ST2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	655.380375	1308.7462	0.65547	0.00042958	1.7435	0.0011427	2.399	0.0015722	655.3812869631281	32.996	0.21703	32.993	32.825	33.042	-0.0024757	1005	49	1.0174452	0.029204369	1.0159258	411.81613		11.820618	-0.15868	-0.0010299	0.0010661	NaN	0.23014	119	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13924	+		31001	10608	17839	18336							0.10417286718620744
WRRWHWVWLLR	11	Unmodified	_WRRWHWVWLLR_					0	0	0			REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.3161442412667	3	565.316144	1692.9266	1.1693	0.00066102	-6.1085	-0.0034532	-4.9392	-0.0027922	565.3126915500101	24.574	0.12055	24.562	24.514	24.634	-0.012392	1326	133	0.8209676	0.08121854	0.81944823	497.25046	0	49.193115						316	6	4	NaN	NaN	NaN	0.7806	1	19804	19804		0.1369	0.11361	1	31540	+		31002	11484	17840	18337	24755	24755					0.10785708647085812
WRWGWFLL	8	Unmodified	_WRWGWFLL_					0	0	0		ENST00000250124.10_1_17:7491195-7491456:+|nuORF	ENST00000250124.10_1_17:7491195-7491456:+|nuORF	ENST00000250124.10_1_17:7491195-7491456:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.3110865543501	2	582.311087	1162.60762	1.242	0.00072325	-4.6582	-0.0027125	-3.4162	-0.0019893	582.3093650237273	37.338	0.16831	37.338	37.265	37.434	0	1203	43	0.8965218	0.025744617	0.8965218	363.34787	0	10.43396						132	8	3	NaN	NaN	NaN	0.84455	1	15237	15237		2.7852	0.18574	1	10361			31003	6274	17841	18338	24756	24756					0.03282067021950752
WRWRRWRKRWR	11	Unmodified	_WRWRRWRKRWR_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	457.7646378882499	4	457.764638	1827.02945	1.3788	0.00063117	0.17342	7.9386E-05	1.5522	0.00071056	457.7649568631688	28.942	0.16896	28.933	28.765	28.933	-0.0083485	1383	22	0.7858409	0.012954056	0.7843215	634.2522	0	10.4552						57	8	2	NaN	NaN	NaN	0.78127	1	19862	19862		0.019562	0.019562	1	3938.2	+		31004	11544	17842	18339	24757	24757					0.149012141583853
WSDINLDA	8	Unmodified	_WSDINLDA_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	467.21925712134987	2	467.219257	932.423961	1.5146	0.00070766	-2.5126	-0.0011739	-0.99796	-0.00046627	467.2181873832086	25.322	0.072348	25.322	25.298	25.371	0	1401	31	0.77473325	0.018518806	0.77473325	314.8957	0	7.5270996						53	4	2	NaN	NaN	NaN	0.84945	1	6647	6647		0	0	1	3272.8	+		31005	11013	17843	18340	24758	24758					-0.04495371270263604
WSESVQSI	8	Unmodified	_WSESVQSI_					0	0	0			REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.22708215345	2	468.227082	934.439611	1.3837	0.00064788	-0.96086	-0.0004499	0.42284	0.00019798	468.2271208975277	26.07	0.048286	26.059	26.035	26.083	-0.011137	1329	34	0.81912065	0.020318925	0.8176012	332.92685	0	8.258514						58	3	2	NaN	NaN	NaN	0.83211	1	6571	6571		4.9097	0.49665	1	5922.7	+		31006	10999	17844	18341	24759	24759					-0.030230847531811378
WSESVQSI	8	Unmodified						0	0	0			REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	468.227082	934.439611	1.6218	0.00075939	-1.5762	-0.000738	0.045689	2.1393E-05	468.22643865015715	26.07	0.096546	26.07	26.046	26.143	0	1332	43	0.8172735	0.025858998	0.8172735	332.1761		10.510254	0.005674	-0.00018127	-0.00016387	NaN	4.9097	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6680.5	+		31007	10999	17844	18341							-0.030230847531811378
WSESVQSI	8	Unmodified						0	0	0			REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	REV__nc|ENSG00000186334|Q495N2-2|SLC36A3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	468.227082	934.439611	1.3837	0.00064788	-0.96086	-0.0004499	0.42284	0.00019798	468.2271208975277	26.07	0.048286	26.059	26.035	26.083	-0.011137	1329	34	0.81912065	0.020318925	0.8176012	332.92685		8.258514	-0.005674	0.00039493	0.00016387	NaN	4.9097	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5922.7	+		31008	10999	17844	18341							-0.030230847531811378
WSFYLGWVS	9	Unmodified	_WSFYLGWVS_					0	0	0		ENST00000595217.1_1_19:51875033-51875395:-|nuORF;ENSG00000105374|ENST00000221978|NKG7	ENST00000595217.1_1_19:51875033-51875395:-|nuORF	ENST00000595217.1_1_19:51875033-51875395:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.7767422105001	2	572.776742	1143.53893	1.9541	0.0011193	-4.606	-0.0026382	-2.6519	-0.001519	572.7739701018407	22.308	0.40965	22.294	22.197	22.607	-0.013731	1236	154	0.876284	0.0939008	0.8747646	355.21518	0	38.064148						1998	18	6	NaN	NaN	NaN	0.032764	1	14091	14091		55.494	9.6671	1	1781600			31009	1532	17845	18342	24760	24760					-0.027096420684301847
WSFYLGWVS	9	Unmodified						0	0	0		ENST00000595217.1_1_19:51875033-51875395:-|nuORF;ENSG00000105374|ENST00000221978|NKG7	ENST00000595217.1_1_19:51875033-51875395:-|nuORF	ENST00000595217.1_1_19:51875033-51875395:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	572.776742	1143.53893	2.5075	0.0014363	-5.6668	-0.0032458	-3.1593	-0.0018096	572.773265257515	22.26	0.38567	22.26	22.163	22.549	0	1236	163	0.876284	0.09940827	0.876284	355.2152		40.29666	-0.017067	-0.0006434	0.00075972	NaN	55.494	1700	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1644600			31010	1532	17845	18342							-0.027096420684301847
WSGNGAQF	8	Unmodified	_WSGNGAQF_					0	0	0			REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.3791426261	1	866.379143	865.371866	1.0327	0.00089472	-5.5037	-0.0047683	-4.471	-0.0038736	866.3731724593767	28.749	0.16891	28.74	28.668	28.837	-0.0083504	402	55	1.3804773	0.032165885	1.3789579	280.87286	0	6.544464						180	8	3	NaN	NaN	NaN	0.78967	1	5466	5466		10.605	0.5534	1	13801	+		31011	8659	17846	18343	24761	24761					-0.06620489893339254
WSGRFYSLW	9	Unmodified	_WSGRFYSLW_					0	0	0		ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.2930907664501	2	601.293091	1200.57163	1.0283	0.00061833	6.7466	0.0040567	7.775	0.004675	601.2973514599129	24.815	0.12062	24.803	24.755	24.875	-0.012394	1128	85	0.9424274	0.051372707	0.94090796	381.8111	0	20.812897						363	6	4	NaN	NaN	NaN	0.042816	1	15845	15845		49.961	21.295	1	77927			31012	4238	17847	18344	24762	24762					-0.020634349455804113
WSGRFYSLW	9	Unmodified						0	0	0		ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B;ENST00000436236.1_1_3:31638325-31661336:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	ENST00000453168.5_1_3:31574490-31661308:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.293091	1200.57163	1.401	0.0008424	6.6322	0.0039879	8.0331	0.0048303	601.2966383946336	24.791	0.19304	24.791	24.719	24.912	0	1125	91	0.9442611	0.055048108	0.9442611	382.55396		22.30194	-0.0057888	-9.4453E-05	0.0016765	NaN	49.961	400	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89928			31013	4238	17847	18344							-0.020634349455804113
WSICCTCTWS	10	Unmodified	_WSICCTCTWS_					0	0	0			REV__ENST00000448213.2_1_1:81968019-81968232:+|nuORF	REV__ENST00000448213.2_1_1:81968019-81968232:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	397.15401705830004	3	397.154017	1188.44022	1.4835	0.00058918	6.0347	0.0023967	7.5182	0.0029859	397.49063970481626	30.173	0.048271	30.173	30.173	30.222	0	1482	58	0.72465914	0.035306215	0.72465914	440.42484	0	21.457977						65	3	2	NaN	NaN	NaN	0.75017	1	16092	16092		4.6175	1.313	1	4815.6	+		31014	12219	17848	18345	24763	24763					-0.1464607269165299
WSLDEAESME	10	Unmodified	_WSLDEAESME_					0	0	0		ENST00000471595.5_1_3:135974803-135980812:+|nuORF	ENST00000471595.5_1_3:135974803-135980812:+|nuORF	ENST00000471595.5_1_3:135974803-135980812:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	399.4973828514667	3	399.497383	1195.47032	1.3528	0.00054043	7.8471	0.0031349	9.1999	0.0036753	399.83485818832514	27.881	0.096518	27.881	27.857	27.953	0	1497	37	0.71537006	0.022299886	0.71537006	434.74994	0	13.552246						87	5	4	NaN	NaN	NaN	0.76548	1	16316	16316		1.5256	0	1	4509.9			31015	7155	17849	18346	24764	24764					-0.11959719221113119
WSLESFWSF	9	Unmodified	_WSLESFWSF_					0	0	0			REV__ENST00000373603.5_1_9:127115319-127115397:+|nuORF	REV__ENST00000373603.5_1_9:127115319-127115397:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.7716568326	2	594.771657	1187.52876	1.0066	0.00059868	-5.1652	-0.0030721	-4.1587	-0.0024735	594.7661150709816	22.091	0.072325	22.077	22.077	22.149	-0.013731	1206	64	0.894683	0.038602352	0.89316356	362.5134	0	15.641174						96	4	2	NaN	NaN	NaN	0.58159	1	15459	15459		6.2502	1.5211	1	7289	+		31016	11923	17850	18347	24765	24765					-0.05750249793686635
WSLGILMYE	9	Unmodified	_WSLGILMYE_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.5492444218	1	1111.54924	1110.54197	0.81642	0.00090749	1.4684	0.0016322	2.2848	0.0025397	1111.5500314742596	37.142	0.14452	37.145	37.096	37.241	0.0022507	63	49	1.5811787	0.028247952	1.5796592	320.59448	0	5.7274475						162	7	2	NaN	NaN	NaN	0.14301	1	12921	12921		29.598	2.8668	1	14517			31017	5420	17851	18348	24766	24766					-0.008881350059255055
WSLHSSLSLC	10	Unmodified	_WSLHSSLSLC_					0	0	0		ENST00000403496.6_1_1:32705729-32705810:-|nuORF	ENST00000403496.6_1_1:32705729-32705810:-|nuORF	ENST00000403496.6_1_1:32705729-32705810:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7764162470002	2	566.776416	1131.53828	2.8128	0.0015942	-4.8943	-0.002774	-2.0816	-0.0011798	566.7731456197049	22.621	0.67491	22.607	22.414	23.089	-0.01354	1221	520	0.885486	0.3204347	0.88396657	358.9907	0	129.90953						3241	29	6	NaN	NaN	NaN	0.15427	1	13686	13686		39.459	5.7604	1	8985300			31018	6838	17852	18349	24767	24767					-0.02222804779762555
WSLRWSARWA	10	Unmodified	_WSLRWSARWA_					0	0	0			REV__ENST00000464499.5_1_16:70502828-70508568:+|nuORF	REV__ENST00000464499.5_1_16:70502828-70508568:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.2316344595333	3	440.231634	1317.67307	2.3385	0.0010295	-4.9333	-0.0021718	-2.5948	-0.0011423	440.2294433867698	16.107	0.071928	16.094	16.07	16.142	-0.012611	1398	34	0.77658504	0.02036959	0.7750656	471.45303	0	12.366089						55	4	2	NaN	NaN	NaN	0.75126	1	18226	18226		4.5433	0	1	3810	+		31019	10147	17853	18350	24768	24768					0.026944364769633466
WSNEYIDQI	9	Unmodified	_WSNEYIDQI_					0	0	0			REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2694782844001	2	584.269478	1166.5244	1.9078	0.0011147	2.7256	0.0015925	4.6334	0.0027071	584.2719700064703	23.947	0.12057	23.947	23.851	23.971	0	1209	70	0.892844	0.042287946	0.892844	361.84302	0	17.138031						229	6	4	NaN	NaN	NaN	0.2961	1	15348	15348		19.164	2.5794	1	35603	+		31020	8789	17854	18351	24769	24769					-0.052197590072410094
WSNEYIDQI	9	Unmodified						0	0	0			REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	584.269478	1166.5244	1.9078	0.0011147	2.7256	0.0015925	4.6334	0.0027071	584.2719700064703	23.947	0.12057	23.947	23.851	23.971	0	1209	70	0.892844	0.042287946	0.892844	361.84302		17.138031	0.0066443	-2.0863E-05	-0.00015978	NaN	19.164	229	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35603	+		31021	8789	17854	18351							-0.052197590072410094
WSNEYIDQI	9	Unmodified						0	0	0			REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	584.269478	1166.5244	1.6004	0.00093504	2.7632	0.0016144	4.3635	0.0025495	584.2701262867303	23.947	0.12057	23.934	23.886	24.006	-0.013048	1206	79	0.894683	0.047827005	0.89316356	362.58832		19.382843	-0.0066443	2.3069E-05	0.00015978	NaN	19.164	237	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37778	+		31022	8789	17854	18351							-0.052197590072410094
WSQPCDVWS	9	Unmodified	_WSQPCDVWS_					0	0	0		ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENST00000461981.5_1_2:201718031-201721754:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000416636.2_1_7:23624683-23625604:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000497188.1_1_1:155234069-155238352:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000013441|P49759-3|CLK1	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.23184156785	2	554.231842	1106.44913	1.6845	0.00093358	-8.3927	-0.0046515	-6.7082	-0.0037179	554.2270127156124	26.191	0.1448	26.191	26.094	26.239	0	1290	40	0.84311575	0.023976922	0.84311575	341.9064	0	9.723297						114	7	3	NaN	NaN	NaN	0.58159	1	13106	13106		6.2502	1.8371	1	9982.8			31023	1905	17855	18352	24770	24770					-0.09983639739334649
WSQPCDVWS	9	Unmodified						0	0	0		ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENST00000461981.5_1_2:201718031-201721754:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000416636.2_1_7:23624683-23625604:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000497188.1_1_1:155234069-155238352:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2;nc|ENSG00000013441|P49759-3|CLK1	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	ENST00000519583.5_1_5:178030620-178044013:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.231842	1106.44913	1.8939	0.0010497	-10.646	-0.0059005	-8.7523	-0.0048508	554.2255139157567	26.191	0.12069	26.18	26.107	26.228	-0.011137	1290	40	0.84311575	0.023976922	0.8415963	341.9064		9.723297	-0.005674	-0.0010734	-0.00075972	NaN	6.2502	101	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10255			31024	1905	17855	18352							-0.09983639739334649
WSSRAKLV	8	Unmodified	_WSSRAKLV_					0	0	0			REV__ENST00000217381.2_1_20:31996371-31996559:-|nuORF	REV__ENST00000217381.2_1_20:31996371-31996559:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.77707656150005	2	473.777077	945.5396	1.0674	0.00050573	7.5149	0.0035604	8.5823	0.0040661	473.7797383060546	15.484	0.095882	15.472	15.448	15.544	-0.012201	1374	31	0.791392	0.018500745	0.7898726	321.60193	0	7.5182495						88	5	3	NaN	NaN	NaN	0.80692	1	6840	6840		8.2903	0	1	7608.8	+		31025	11462	17856	18353	24771	24771					0.06465197371278464
WSSWTRCSCR	10	Unmodified	_WSSWTRCSCR_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	424.51845823623336	3	424.518458	1270.53355	1.1167	0.00047406	6.6996	0.0028441	7.8163	0.0033182	424.5217972139036	35.215	0.048248	35.215	35.215	35.263	-4.5776E-05	1482	46	0.72465914	0.027855158	0.7231397	440.09863	0	16.916962						65	3	2	NaN	NaN	NaN	0.77144	1	17423	17423		1.1021	0.38596	1	4219.8			31026	8009	17857	18354	24772	24772					-0.09090012194201336
WSTPALAAN	9	Unmodified	_WSTPALAAN_					0	0	0			REV__nc|ENSG00000106078|O75128-2|COBL	REV__nc|ENSG00000106078|O75128-2|COBL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	465.7376170499999	2	465.737617	929.460681	0.35749	0.0001665	0.043044	2.0047E-05	0.40053	0.00018654	465.73760370417983	21.103	0.09626	21.089	21.065	21.162	-0.014004	1260	40	0.8615505	0.023953617	0.8600311	350.1994	0	9.736572						112	5	3	NaN	NaN	NaN	0.58159	1	6455	6455		6.2502	0.15988	1	13159	+		31027	13102	17858	18355	24773	24773					-0.006870746536833394
WSTPALAAN	9	Unmodified						0	0	0			REV__nc|ENSG00000106078|O75128-2|COBL	REV__nc|ENSG00000106078|O75128-2|COBL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	465.737617	929.460681	0.85841	0.00039979	-1.3547	-0.00063096	-0.49634	-0.00023116	465.73698571260275	21.079	0.12042	21.079	21.055	21.175	0	1260	43	0.8615505	0.025797546	0.8615505	350.1994		10.486084	-0.0051792	-0.00084007	0.00075972	NaN	6.2502	121	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13854	+		31028	13102	17858	18355							-0.006870746536833394
WSTPALAAN	9	Unmodified						0	0	0			REV__nc|ENSG00000106078|O75128-2|COBL	REV__nc|ENSG00000106078|O75128-2|COBL	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	465.737617	929.460681	0.35749	0.0001665	0.043044	2.0047E-05	0.40053	0.00018654	465.73760370417983	21.103	0.09626	21.089	21.065	21.162	-0.014004	1260	40	0.8615505	0.023953617	0.8600311	350.1994		9.736572	0.0051792	0.00046193	-0.00075972	NaN	6.2502	112	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13159	+		31029	13102	17858	18355							-0.006870746536833394
WSVFTPGPFA	10	Unmodified	_WSVFTPGPFA_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7767422105002	2	554.776742	1107.53893	1.4194	0.00078744	-10.206	-0.005662	-8.7866	-0.0048746	554.7713800340845	19.06	0.14393	19.06	19.036	19.18	0	1233	79	0.87812483	0.047889054	0.87812483	356.09924	0	19.420105						182	7	3	NaN	NaN	NaN	0.62764	1	13165	13165		13.003	1.4544	1	23481	+		31030	12985	17859	18356	24774	24774					-0.010536420684047698
WTAAAAAA	8	Unmodified	_WTAAAAAA_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.3675153072999	1	732.367515	731.360239	1.0071	0.00073759	1.4697	0.0010763	2.4768	0.0018139	732.3681606343596	33.261	0.12066	33.259	33.21	33.331	-0.0024757	669	46	1.2206948	0.027056336	1.2191753	249.07408	0	5.5206604						105	6	2	NaN	NaN	NaN	0.84651	1	3695	3695		1.6704	0	1	8494.1			31031	312	17860	18357	24775	24775					-0.01618686916685874
WTAAAAAA	8	Unmodified						0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	732.367515	731.360239	0.70431	0.00051581	0.84176	0.00061648	1.5461	0.0011323	732.3682262183964	33.238	0.12067	33.238	33.19	33.311	0	669	55	1.2206948	0.032476425	1.2206948	249.07408		6.6265717	-0.010172	-0.00028629	0.00075972	NaN	1.6704	133	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11691			31032	312	17860	18357							-0.01618686916685874
WTEALENV	8	Unmodified	_WTEALENV_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	961.4625379045001	1	961.462538	960.455261	1.9841	0.0019076	7.7618	0.0074626	9.7458	0.0093703	961.4704079152048	36.252	0.096424	36.253	36.205	36.301	0.0011024	318	61	1.4304334	0.035618424	1.428914	290.58582	0	7.235718						77	5	2	NaN	NaN	NaN	0.77489	1	7196	7196		12.588	1.9829	1	5088.9			31033	361	17861	18358	24776	24776					-0.02654798236130773
WTFCSFALL	9	Unmodified	_WTFCSFALL_					0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.2676957579001	2	544.267696	1086.52084	0.95527	0.00051992	-3.9989	-0.0021765	-3.0437	-0.0016566	544.2642770283725	33.092	0.19302	33.09	33.066	33.259	-0.0024757	1224	73	0.883646	0.04413849	0.88212657	358.42334	0	17.903381						290	9	4	NaN	NaN	NaN	0.36492	1	11926	11926		15.175	3.1267	1	45418	+		31034	12024	17862	18359	24777	24777					-0.0189610031477514
WTFCSFALL	9	Unmodified						0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	544.267696	1086.52084	0.96571	0.00052561	-6.7607	-0.0036796	-5.795	-0.003154	544.2638507467259	33.094	0.24131	33.094	33.069	33.311	0	1227	73	0.88180584	0.0441432	0.88180584	357.67694		17.905304	0.0018679	-0.0016739	-0.00016038	NaN	15.175	315	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59408	+		31035	12024	17862	18359							-0.0189610031477514
WTFCSFALL	9	Unmodified						0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	544.267696	1086.52084	0.95527	0.00051992	-3.9989	-0.0021765	-3.0437	-0.0016566	544.2642770283725	33.092	0.19302	33.09	33.066	33.259	-0.0024757	1224	73	0.883646	0.04413849	0.88212657	358.42334		17.903381	-0.0018679	0.0013324	0.00016038	NaN	15.175	290	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45418	+		31036	12024	17862	18359							-0.0189610031477514
WTGEWISK	8	Unmodified	_WTGEWISK_					0	0	0		ENST00000263401.9_1_11:36297688-36300030:-|nuORF	ENST00000263401.9_1_11:36297688-36300030:-|nuORF	ENST00000263401.9_1_11:36297688-36300030:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.4992577618002	1	1006.49926	1005.49198	1.4482	0.0014576	1.2453	0.0012534	2.6935	0.002711	1006.4965002490637	26.697	0.12066	26.687	26.59	26.711	-0.010645	228	115	1.4837929	0.0674597	1.4822735	301.2346	0	13.695465						345	6	4	NaN	NaN	NaN	0.62311	1	8620	8620		23.85	3.295	1	81900			31037	6318	17863	18360	24778	24778					-0.010545016195578683
WTGGEIAY	8	Unmodified	_WTGGEIAY_					0	0	0			REV__KBTBD13|p.L412M|1|0.22|ENSG00000234438|chr15:65078049-65078049|C/A|missense_variant	REV__KBTBD13|p.L412M|1|0.22|ENSG00000234438|chr15:65078049-65078049|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	896.4148594304	1	896.414859	895.407583	1.7936	0.0016078	-2.5953	-0.0023265	-0.80169	-0.00071865	896.4125191543873	56.085	0.072052	56.085	56.061	56.133	0	378	52	1.3947657	0.030348182	1.3947657	283.631	0	6.171417						116	4	3	NaN	NaN	NaN	0.8439	1	5993	5993		3.1533	0	1	17641	+		31038	11320	17864	18361	24779	24779					-0.04430452436338328
WTHWVGMRLE	10	Unmodified	_WTHWVGMRLE_					0	0	0		ENST00000478189.1_1_6:33049883-33051411:+|nuORF	ENST00000478189.1_1_6:33049883-33051411:+|nuORF	ENST00000478189.1_1_6:33049883-33051411:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.8242321068502	2	657.824232	1313.63391	1.0559	0.00069458	-9.3827	-0.0061722	-8.3268	-0.0054776	657.818401820857	26.939	0.072424	26.928	26.904	26.976	-0.010645	1101	52	0.95892316	0.031145215	0.9574037	388.11398	0	12.605682						121	4	3	NaN	NaN	NaN	0.62092	1	18163	18163		13.463	2.4979	1	12698			31039	7189	17865	18362	24780	24780					-0.010360318688753978
WTINNFSF	8	Unmodified	_WTINNFSF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.4836076976	1	1028.48361	1027.47633	1.3004	0.0013374	0.038252	3.9342E-05	1.3386	0.0013768	1028.4832281898018	31.694	0.21724	31.694	31.646	31.863	0	228	112	1.4837929	0.065653086	1.4837929	301.1474	0	13.324799						348	10	3	NaN	NaN	NaN	0.11674	1	9656	9656		60.982	31.383	1	44704			31040	2287	17866	18363	24781	24781					-0.036307881366155925
WTINNFSF	8	Unmodified	_WTINNFSF_					0	0	0		ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL	ENSG00000121067|ENST00000504102|SPOP	ENSG00000121067|ENST00000504102|SPOP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.4836076976	1	1028.48361	1027.47633	0.60068	0.00061779	0.7316	0.00075244	1.3323	0.0013702	1028.4840908136716	31.693	0.26551	31.688	31.592	31.857	-0.0044174	228	115	1.4837929	0.06741679	1.4822735	301.1474	0	13.68277						334	12	3	NaN	NaN	NaN	0.10287	1	9464	9464		63.731	24.272	1	37822			31041	2287	17866	18363	24782	24782					-0.036307881366155925
WTLCVSYFS	9	Unmodified	_WTLCVSYFS_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|74|2|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|74|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5022942292	1	1105.50229	1104.49502	1.4023	0.0015503	-2.9593	-0.0032715	-1.5569	-0.0017212	1105.4994788739057	34.492	0.07235	34.491	34.467	34.539	-0.0006485	105	52	1.5564433	0.030056357	1.5549239	315.6005	0	6.0945435						94	4	2	NaN	NaN	NaN	0.39244	1	12674	12674		14.042	7.9513	1	9192.2	+		31042	13011	17867	18364	24783	24783					-0.05304994557059217
WTLCVSYFS	9	Unmodified	_WTLCVSYFS_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|74|2|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|74|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.5022942292	1	1105.50229	1104.49502	1.5987	0.0017674	-1.4866	-0.0016435	0.11211	0.00012394	1106.5037795984283	34.588	0.072342	34.587	34.563	34.636	-0.0006485	111	52	1.5529068	0.030059576	1.5513873	314.88336	0	6.0951843						82	4	2	NaN	NaN	NaN	0.39244	1	12680	12680		14.042	7.9513	1	5786.3	+		31043	13011	17867	18364	24784	24784					-0.05304994557059217
WTLIGYVVA	9	Unmodified	_WTLIGYVVA_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.289485445	2	511.289485	1020.56442	1.5926	0.00081425	0.036435	1.8629E-05	1.629	0.00083288	511.29014124538315	34.228	0.048267	34.228	34.203	34.252	0	1272	43	0.854179	0.02580595	0.854179	346.7512	0	10.47583						58	3	2	NaN	NaN	NaN	0.6762	1	9400	9400		1.2418	0	1	3788	+		31044	9011	17868	18365	24785	24785					0.054958324539938985
WTQHEFEL	8	Unmodified	_WTQHEFEL_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.25363125495	2	545.253631	1088.49271	0.94495	0.00051524	-9.6266	-0.005249	-8.6817	-0.0047337	545.7495293158632	35.771	0.14474	35.771	35.699	35.844	0	1296	70	0.8394264	0.042402327	0.8394264	340.47934	0	17.198792						163	7	3	NaN	NaN	NaN	0.76406	1	12302	12302		14.042	1.4537	1	9771.3			31045	592	17869	18366	24786	24786					-0.047997069705161266
WTRRRRRQPRR	11	Unmodified	_WTRRRRRQPRR_					0	0	0		ENST00000588173.1_1_19:13264262-13264382:+|nuORF	ENST00000588173.1_1_19:13264262-13264382:+|nuORF	ENST00000588173.1_1_19:13264262-13264382:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	812.4856138036	2	812.485614	1622.95667	2.0737	0.0016849	-3.9786	-0.0032326	-1.9049	-0.0015477	812.4813994571655	54.524	0.072334	54.524	54.5	54.572	0	627	46	1.24593	0.027018785	1.24593	503.27524	0	10.913879						185	4	4	NaN	NaN	NaN	0.78138	1	20774	20774		0	0	1	22964			31046	7711	17870	18367	24787	24787					0.17011460364983577
WTRRRRRQPRR	11	Unmodified	_WTRRRRRQPRR_					0	0	0		ENST00000588173.1_1_19:13264262-13264382:+|nuORF	ENST00000588173.1_1_19:13264262-13264382:+|nuORF	ENST00000588173.1_1_19:13264262-13264382:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	812.4856138036	2	812.485614	1622.95667	-0.12781	-0.00010384	-2.0169	-0.0016387	-2.1447	-0.0017426	812.4840739602867	54.546	0.09642	54.545	54.497	54.593	-0.00061798	867	37	1.1012185	0.021799922	1.099699	444.82117	0	8.805756						113	5	3	NaN	NaN	NaN	0.78138	1	19746	19746		0	0	1	11596			31047	7711	17870	18367	24788	24788					0.17011460364983577
WTSSGHGL	8	Unmodified	_WTSSGHGL_					0	0	0		nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L;nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L	nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L	nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	844.3947926903003	1	844.394793	843.387516	1.7781	0.0015014	-3.9171	-0.0033076	-2.139	-0.0018062	844.3900141840934	20.911	0.024057	20.911	20.911	20.935	0	465	37	1.3429124	0.021487355	1.3429124	273.34128	0	4.3736267						32	2	2	NaN	NaN	NaN	0.80071	1	5307	5307		9.1232	1.5828	1	1909.2			31048	1047	17871	18368	24789	24789					-0.04044203376270161
WTVEPQPRG	9	Unmodified	_WTVEPQPRG_					0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.54251956	1	1069.54252	1068.53524	0.62391	0.0006673	-9.0631	-0.0096933	-8.4392	-0.009026	1069.5328936674641	32.296	0.14479	32.292	32.268	32.413	-0.0037613	117	58	1.5493695	0.033603072	1.54785	314.29663	0	6.8165283						174	7	2	NaN	NaN	NaN	0.66035	1	11211	11211		2.4615	0	1	16719	+		31049	11203	17872	18369	24790	24790					0.0037168815772474773
WTVEPQPRG	9	Unmodified						0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1069.54252	1068.53524	1.4478	0.0015485	-8.3184	-0.0088969	-6.8706	-0.0073484	1069.5346348252967	32.321	0.096561	32.321	32.273	32.37	0	117	55	1.5493695	0.03183961	1.5493695	314.2966		6.4588013	0.01449	0.00034454	0.00075972	NaN	2.4615	136	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13748	+		31050	11203	17872	18369							0.0037168815772474773
WTVEPQPRG	9	Unmodified						0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1069.54252	1068.53524	0.62391	0.0006673	-9.0631	-0.0096933	-8.4392	-0.009026	1069.5328936674641	32.296	0.14479	32.292	32.268	32.413	-0.0037613	117	58	1.5493695	0.033603072	1.54785	314.29663		6.8165283	-0.01449	-0.0004519	-0.00075972	NaN	2.4615	174	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16719	+		31051	11203	17872	18369							0.0037168815772474773
WTYFDTYMR	9	Unmodified	_WTYFDTYMR_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.78169859015	2	641.781699	1281.54884	1.5546	0.00099773	-7.2085	-0.0046263	-5.6539	-0.0036285	641.7773816313512	30.269	0.1689	30.263	30.166	30.335	-0.0064106	1134	73	0.9387595	0.044038475	0.93724006	380.05194	0	17.828766						234	8	4	NaN	NaN	NaN	0.51576	1	17624	17624		8.962	3.2678	1	19933			31052	13690	17873	18370	24791	24791					-0.08066822125374529
WVAYGFKK	8	Unmodified	_WVAYGFKK_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	ENSG00000185313|ENST00000449082|SCN10A;nc|ENSG00000183873|Q14524-5|SCN5A	ENSG00000185313|ENST00000449082|SCN10A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5458140239001	1	998.545814	997.538538	2.1586	0.0021555	-6.2416	-0.0062325	-4.083	-0.0040771	998.5379779651404	30.125	0.096544	30.125	30.077	30.173	0	210	91	1.4944444	0.05327463	1.4944444	303.42978	0	10.816803						234	5	3	NaN	NaN	NaN	0.84651	1	8484	8484		1.6704	0	1	25408			31053	5406;7997	17874	18371	24792	24792					0.03966983002374036
WVAYGFKK	8	Unmodified						0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	ENSG00000185313|ENST00000449082|SCN10A;nc|ENSG00000183873|Q14524-5|SCN5A	ENSG00000185313|ENST00000449082|SCN10A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.545814	997.538538	1.2349	0.0012331	-6.1695	-0.0061606	-4.9347	-0.0049275	998.539247802106	30.1	0.096504	30.094	30.07	30.166	-0.0064106	207	100	1.496219	0.058605194	1.4946996	303.79007		11.899109	-0.015757	3.0105E-05	0.00012758	NaN	1.6704	220	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22912			31054	5406;7997	17874	18371							0.03966983002374036
WVDDDFLF	8	Unmodified	_WVDDDFLF_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7372826989999	2	528.737283	1055.46001	1.3767	0.00072793	-4.3637	-0.0023073	-2.987	-0.0015793	528.7357211935774	29.208	0.16891	29.208	29.184	29.353	0	1281	61	0.84864825	0.036889493	0.84864825	344.35443	0	14.968597						168	8	3	NaN	NaN	NaN	0.76633	1	10864	10864		13.737	1.1492	1	18604			31055	4523	17875	18372	24793	24793					-0.06549914093398002
WVDEMQVQL	9	Unmodified	_WVDEMQVQL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1147.5452216764	1	1147.54522	1146.53795	2.7198	0.0031211	-1.9223	-0.0022059	0.79752	0.00091519	1147.543435466067	28.605	0.21717	28.605	28.556	28.774	0	66	76	1.579413	0.04415381	1.579413	320.11304	0	8.949005						247	10	3	NaN	NaN	NaN	0.022082	1	14680	14680		69.363	38.753	1	25259			31056	3759;7960	17876	18373	24794	24794					-0.029462244996466325
WVDEMQVQL	9	Unmodified	_WVDEMQVQL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.2762490715	2	574.276249	1146.53795	1.938	0.0011129	0.49969	0.00028696	2.4377	0.0013999	574.276223219527	28.605	0.21718	28.605	28.484	28.701	0	1209	70	0.892844	0.042292476	0.892844	361.91672	0	17.143372						375	10	4	NaN	NaN	NaN	0.070055	1	14681	14681		40.154	0.69505	1	217820			31057	3759;7960	17876	18373	24795	24795					-0.029462244996466325
WVDEMQVQL	9	Unmodified	_WVDEMQVQL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1147.5452216764	1	1147.54522	1146.53795	1.9447	0.0022316	0.041086	4.7148E-05	1.9858	0.0022788	1147.5450446011675	28.604	0.14477	28.596	28.547	28.692	-0.0083504	66	55	1.579413	0.031785727	1.5778936	320.11304	0	6.4422607						195	7	3	NaN	NaN	NaN	0.011693	1	14194	14194		87.778	56.103	1	21440			31058	3759;7960	17876	18373	24796	24796					-0.029462244996466325
WVDEMQVQL	9	Unmodified	_WVDEMQVQL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.2762490715	2	574.276249	1146.53795	1.3071	0.00075065	1.0118	0.00058105	2.3189	0.0013317	574.2767925784102	28.604	0.24128	28.596	28.499	28.74	-0.0083504	1206	85	0.894683	0.05150044	0.89316356	362.66217	0	20.875824						458	11	4	NaN	NaN	NaN	0.028349	1	14195	14195		61.271	10.956	1	234430			31059	3759;7960	17876	18373	24797	24797					-0.029462244996466325
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(96)QVQL	0	0	1		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.27370638255	2	582.273706	1162.53286	2.1528	0.0012535	-1.992	-0.0011599	0.16083	9.3645E-05	582.2726321150541	24.767	0.28958	24.767	24.695	24.985	0	1212	88	0.8910048	0.053331077	0.8910048	361.11215	0	21.61435						682	13	6	NaN	NaN	NaN	0.0084155	1	15224	15224		95.62	34.638	1	335110			31060	3759;7960	17876	18374	24798	24798		416			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(53)QVQL	0	0	1		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1163.5401362984999	1	1163.54014	1162.53286	2.5413	0.0029569	-0.83927	-0.00097652	1.702	0.0019804	1163.5398144057697	24.767	0.096523	24.767	24.719	24.816	0	72	61	1.5758814	0.035321116	1.5758814	319.3449	0	7.1576843						157	5	3	NaN	NaN	NaN	0.03618	1	15225	15225		52.78	10.462	1	18289			31061	3759;7960	17876	18374	24799	24799		416			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(89)QVQL	0	0	1		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.27370638255	2	582.273706	1162.53286	1.8769	0.0010929	-0.68003	-0.00039597	1.1969	0.00069692	582.2738500751911	24.767	0.26538	24.755	24.707	24.972	-0.012392	1212	88	0.8910048	0.053331077	0.88948536	361.11215	0	21.61435						584	12	5	NaN	NaN	NaN	0.011206	1	14705	14705		89.256	44.091	1	310470			31062	3759;7960	17876	18374	24800	24800		416			-0.04190528362278201
WVDEMQVQL	9	Oxidation (M)	_WVDEM(Oxidation (M))QVQL_		WVDEM(1)QVQL		WVDEM(72)QVQL	0	0	1		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1163.5401362984999	1	1163.54014	1162.53286	2.0023	0.0023297	-0.22552	-0.0002624	1.7767	0.0020673	1163.5388690955326	24.767	0.096508	24.755	24.707	24.803	-0.012392	72	58	1.5758814	0.03355682	1.5743619	319.3449	0	6.8001404						138	5	3	NaN	NaN	NaN	0.01966	1	14706	14706		72.428	32.275	1	13572			31063	3759;7960	17876	18374	24801	24801		416			-0.04190528362278201
WVDPNSPVL	9	Unmodified	_WVDPNSPVL_					0	0	0		nc|ENSG00000196139|P42330-2|AKR1C3;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2	nc|ENSG00000196139|P42330-2|AKR1C3	nc|ENSG00000196139|P42330-2|AKR1C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1026.5254725123	1	1026.52547	1025.5182	2.4862	0.0025522	-1.4121	-0.0014496	1.0741	0.0011026	1026.52378329671	26.288	0.16895	26.288	26.239	26.408	0	267	91	1.4606913	0.05331421	1.4606913	296.46625	0	10.820801						260	8	4	NaN	NaN	NaN	0.0092442	1	9597	9597		93.929	53.775	1	37907			31064	3747	17877	18375	24802	24802					0.0064576755189591495
WVDPNSPVL	9	Unmodified	_WVDPNSPVL_					0	0	0		nc|ENSG00000196139|P42330-2|AKR1C3;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2	nc|ENSG00000196139|P42330-2|AKR1C3	nc|ENSG00000196139|P42330-2|AKR1C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1026.5254725123	1	1026.52547	1025.5182	1.7746	0.0018216	-0.24916	-0.00025577	1.5254	0.0015659	1026.5245022185507	26.287	0.14472	26.276	26.228	26.373	-0.011137	264	97	1.4624695	0.056868553	1.46095	296.82715	0	11.542175						228	7	3	NaN	NaN	NaN	0.017076	1	9409	9409		75.698	22.94	1	36218			31065	3747	17877	18375	24803	24803					0.0064576755189591495
WVDSPRAA	8	Unmodified	_WVDSPRAA_					0	0	0		ENST00000488907.5_1_2:97276365-97278231:-|nuORF	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.4526419202	1	901.452642	900.445365	1.5694	0.0014147	-9.9002	-0.0089245	-8.3308	-0.0075098	901.4429737760987	31.91	0.048264	31.906	31.882	31.93	-0.0037613	381	40	1.3929803	0.023205042	1.3914609	283.24402	0	4.718445						51	3	2	NaN	NaN	NaN	0.81251	1	5970	5970		7.5404	2.0745	1	3679.9			31066	7254	17878	18376	24804	24804					-0.008839414508656773
WVEMKLCEN	9	Unmodified	_WVEMKLCEN_					0	0	0		ENST00000509352.1_1_5:147302326-147302500:+|nuORF	ENST00000509352.1_1_5:147302326-147302500:+|nuORF	ENST00000509352.1_1_5:147302326-147302500:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2648271054501	2	576.264827	1150.5151	1.5744	0.00090728	-7.6581	-0.0044131	-6.0837	-0.0035058	576.2603020683774	29.594	0.24137	29.594	29.401	29.642	0	1221	55	0.885486	0.03311813	0.885486	358.91943	0	13.42395						343	11	5	NaN	NaN	NaN	0.44082	1	14822	14822		12.049	0.50025	1	42872			31067	7346	17879	18377	24805	24805					-0.054135668887738575
WVFEHCVSCFT	11	Unmodified	_WVFEHCVSCFT_					0	0	0			REV__nc|ENSG00000065675|Q04759-3|PRKCQ	REV__nc|ENSG00000065675|Q04759-3|PRKCQ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	679.288833518	2	679.288834	1356.56311	1.5979	0.0010854	-10.072	-0.006842	-8.4744	-0.0057565	679.2820640383237	28.388	0.14477	28.388	28.243	28.388	0	1083	94	0.9699114	0.056800306	0.9699114	392.43204	0	22.98175						176	7	2	NaN	NaN	NaN	0.32978	1	19623	19623		24.562	7.9779	1	17993	+		31068	8541	17880	18378	24806	24806					-0.10090492968720355
WVFEHCVSCFT	11	Unmodified						0	0	0			REV__nc|ENSG00000065675|Q04759-3|PRKCQ	REV__nc|ENSG00000065675|Q04759-3|PRKCQ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	679.288834	1356.56311	1.5979	0.0010854	-10.072	-0.006842	-8.4744	-0.0057565	679.2820640383237	28.388	0.14477	28.388	28.243	28.388	0	1083	94	0.9699114	0.056800306	0.9699114	392.43204		22.98175	-0.15232	-0.00020381	0.0053379	NaN	24.562	176	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17993	+		31069	8541	17880	18378							-0.10090492968720355
WVGAAAAA	8	Unmodified	_WVGAAAAA_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.68993857589993	2	358.689939	715.365324	1.2103	0.00043414	-6.0714	-0.0021778	-4.8611	-0.0017436	358.6886762615965	55.915	0.048016	55.914	55.866	55.914	-0.00059128	1479	28	0.72651637	0.01671493	0.7249969	296.5951	0	6.8237305						36	3	2	NaN	NaN	NaN	0.84876	1	3447	3447		0.39566	0	1	1933.5	+		31070	13189	17881	18379	24807	24807					-0.003743830540656745
WVGRIMFLLSP	11	Unmodified	_WVGRIMFLLSP_					0	0	0			REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	659.8706509832001	2	659.870651	1317.72675	2.2131	0.0014603	-5.7174	-0.0037727	-3.5043	-0.0023124	660.3685632868323	23.103	0.096277	23.09	23.017	23.114	-0.013294	1083	34	0.9699114	0.020139694	0.96839195	392.54865	0	8.151093						67	5	2	NaN	NaN	NaN	0.65577	1	18229	18229		10.36	0.11644	1	4224.3	+		31071	12854	17882	18380	24808	24808					0.08059472864488271
WVHLDGPG	8	Unmodified	_WVHLDGPG_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4311781966002	1	880.431178	879.423902	1.9593	0.001725	3.911	0.0034434	5.8703	0.0051684	880.4347365267415	23.441	0.24128	23.427	23.379	23.62	-0.013294	378	91	1.3947657	0.05358696	1.3932463	283.709	0	10.900116						464	11	4	NaN	NaN	NaN	0.75682	1	5668	5668		15.013	1.2758	1	80447			31072	2417	17883	18381	24809	24809					-0.02063326479560601
WVHLDVTLFG	10	Unmodified	_WVHLDVTLFG_					0	0	0			REV__ENST00000493891.5_1_1:60103921-60223658:+|nuORF	REV__ENST00000493891.5_1_1:60103921-60223658:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.8163986872501	2	593.816399	1185.61824	1.1331	0.00067288	-1.7692	-0.0010506	-0.63603	-0.00037768	593.8150548953702	20.887	0.19261	20.887	20.838	21.031	0	1158	46	0.92408	0.027537405	0.92408	374.43158	0	11.15802						258	9	4	NaN	NaN	NaN	0.64158	1	16036	16036		12.049	0.87837	1	39317	+		31073	10655	17884	18382	24810	24810					0.03286004885694638
WVHVSFENRY	10	Unmodified	_WVHVSFENRY_					0	0	0			REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.2192830567667	3	446.219283	1335.63602	0.79644	0.00035539	9.1518	0.0040837	9.9482	0.0044391	446.22402485249944	24.237	0.12065	24.237	24.213	24.333	0	1431	34	0.75620437	0.020391703	0.75620437	459.0162	0	12.377747						107	6	3	NaN	NaN	NaN	0.76548	1	19343	19343		1.5256	0	1	9874.8	+		31074	12961	17885	18383	24811	24811					-0.018372798594327833
WVLSSATT	8	Unmodified	_WVLSSATT_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.7267180126999	2	432.726718	863.438883	1.5811	0.00068418	-10.398	-0.0044995	-8.817	-0.0038154	432.7224755950506	26.36	0.16895	26.36	26.336	26.505	0	1365	34	0.7969414	0.020343125	0.7969414	324.29794	0	8.278198						80	8	2	NaN	NaN	NaN	0.82797	1	5575	5575		5.4659	1.0528	1	7770.8	+		31075	11095	17886	18384	24812	24812					0.0017012059774970112
WVLSSATT	8	Unmodified	_WVLSSATT_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.7267180126999	2	432.726718	863.438883	1.4142	0.00061197	-9.9754	-0.0043166	-8.5612	-0.0037047	432.72242050094457	26.384	0.12066	26.373	26.373	26.493	-0.011137	1362	37	0.79879075	0.022191346	0.7972713	325.0505	0	9.030273						78	6	2	NaN	NaN	NaN	0.76633	1	5439	5439		13.737	3.1321	1	6600.4	+		31076	11095	17886	18384	24813	24813					0.0017012059774970112
WVLSSATT	8	Unmodified						0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	432.726718	863.438883	1.5811	0.00068418	-10.398	-0.0044995	-8.817	-0.0038154	432.7224755950506	26.36	0.16895	26.36	26.336	26.505	0	1365	34	0.7969414	0.020343125	0.7969414	324.29794		8.278198	-0.006351	-0.00021474	-0.00016497	NaN	13.737	80	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7770.8	+		31077	11095	17886	18384							0.0017012059774970112
WVLSSATT	8	Unmodified						0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	432.726718	863.438883	1.4142	0.00061197	-9.9754	-0.0043166	-8.5612	-0.0037047	432.72242050094457	26.384	0.12066	26.373	26.373	26.493	-0.011137	1362	37	0.79879075	0.022191346	0.7972713	325.0505		9.030273	0.006351	0.00015109	0.00016497	NaN	13.737	78	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6600.4	+		31078	11095	17886	18384							0.0017012059774970112
WVLYFVSFPW	10	Unmodified	_WVLYFVSFPW_					0	0	0			REV__MOGAT3|p.L52H|1|0.19|ENSG00000106384|chr7:101200470-101200470|A/T|missense_variant	REV__MOGAT3|p.L52H|1|0.19|ENSG00000106384|chr7:101200470-101200470|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3447919859501	2	672.344792	1342.67503	1.0551	0.00070939	-0.27411	-0.00018429	0.781	0.0005251	672.3437409609841	24.526	0.24131	24.514	24.393	24.634	-0.012392	1086	49	0.9680805	0.029292583	0.9665611	391.7321	0	11.85318						169	11	2	NaN	NaN	NaN	0.77318	1	18585	18585		2.1763	0.47414	1	20737	+		31079	8989	17887	18385	24814	24814					0.01740052442232809
WVQDPFRFA	9	Unmodified	_WVQDPFRFA_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2930907664501	2	583.293091	1164.57163	2.4613	0.0014357	0.26284	0.00015331	2.7242	0.001589	583.2925588232423	18.77	0.048029	18.756	18.731	18.78	-0.014059	1242	43	0.87260187	0.025772452	0.8710824	353.64642	0	10.445007						41	3	2	NaN	NaN	NaN	0.56671	1	14769	14769		6.8632	1.1691	1	3704.2	+		31080	10966	17888	18386	24815	24815					-0.004074349455777337
WVRRMFVA	8	Unmodified	_WVRRMFVA_					0	0	0			REV__ENST00000319888.10_1_18:2567627-2571211:-|nuORF	REV__ENST00000319888.10_1_18:2567627-2571211:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.7947463859001	2	532.794746	1063.57494	1.6662	0.00088776	-3.482	-0.0018552	-1.8157	-0.00096741	532.7934030030847	26.022	0.21724	26.011	25.962	26.18	-0.011135	1257	76	0.86339295	0.04605466	0.8618735	350.30292	0	18.685669						165	10	2	NaN	NaN	NaN	0.80071	1	11030	11030		9.1232	2.1388	1	12658	+		31081	11714	17889	18387	24816	24816					0.04569536627445814
WVRTFNVCLS	10	Unmodified	_WVRTFNVCLS_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|60|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|60|1|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|60|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	408.87798086856674	3	408.877981	1223.61211	1.1606	0.00047453	-4.6537	-0.0019028	-3.4931	-0.0014283	408.87583869062416	20.814	0.19268	20.814	20.79	20.983	0	1437	67	0.7524962	0.040812194	0.7524962	457.19272	0	24.796173						252	9	4	NaN	NaN	NaN	0.66626	1	17062	17062		5.6972	0	1	40381			31082	7841	17890	18388	24817	24817					0.009251633825442696
WVSRRRRWSRT	11	Unmodified	_WVSRRRRWSRT_					0	0	0			REV__ENST00000308595.9_1_11:67046736-67046967:+|nuORF	REV__ENST00000308595.9_1_11:67046736-67046967:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	515.9589081145667	3	515.958908	1544.85489	0.94276	0.00048643	0.58123	0.00029989	1.524	0.00078632	516.2934258945339	34.154	0.096569	34.153	34.08	34.177	-0.0012474	1332	52	0.8172735	0.031395137	0.81575406	495.39752	0	19.030457						117	5	2	NaN	NaN	NaN	0.77734	1	19665	19665		0.70822	0.21744	1	13300	+		31083	11680	17891	18389	24818	24818					0.10426169222591852
WVSTDRGSSQ	10	Unmodified	_WVSTDRGSSQ_					0	0	0			REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF	REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.84399331823334	3	374.843993	1121.51015	3.394	0.0012722	4.0425	0.0015153	7.4365	0.0027875	375.18000932374554	18.338	0.024038	18.324	18.3	18.324	-0.01395	1551	40	0.6818875	0.024206758	0.6803681	414.71283	0	14.722168						33	2	2	NaN	NaN	NaN	0.74854	1	13333	13333		2.239	0.55841	1	2130.4	+		31084	12762	17892	18390	24819	24819					-0.04574411435510228
WVTVGSAG	8	Unmodified	_WVTVGSAG_					0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	776.3937300578001	1	776.39373	775.386454	1.0014	0.00077745	5.9952	0.0046547	6.9966	0.0054321	776.3979142388006	31.115	0.14478	31.115	31.091	31.235	0	552	58	1.2908988	0.0341326	1.2908988	263.12338	0	6.957245						214	7	3	NaN	NaN	NaN	0.84207	1	4436	4436		3.5732	0	1	25277			31085	13798	17893	18391	24820	24820					-0.010224177451846117
WVTVGSAG	8	Unmodified						0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	776.39373	775.386454	1.2917	0.0010029	3.959	0.0030737	5.2507	0.0040766	776.3967924041704	31.114	0.24136	31.109	31.06	31.302	-0.0050716	549	55	1.292695	0.032334447	1.2911756	263.48953		6.5906982	-0.0030384	-0.00082483	0.00013841	NaN	3.5732	250	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29127			31086	13798	17893	18391							-0.010224177451846117
WVVQQKNK	8	Unmodified	_WVVQQKNK_					0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2956334554001	2	515.295633	1028.57671	1.944	0.0010017	-3.4327	-0.0017689	-1.4887	-0.00076711	515.2931739005732	15.414	0.072087	15.414	15.39	15.462	0	1272	34	0.854179	0.020277202	0.854179	346.71527	0	8.230591						71	4	2	NaN	NaN	NaN	0.84692	1	9725	9725		1.4396	0	1	6012.4	+		31087	8188	17894	18392	24821	24821					0.06356868917032443
WVVQQKNK	8	Unmodified						0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	515.295633	1028.57671	1.944	0.0010017	-3.4327	-0.0017689	-1.4887	-0.00076711	515.2931739005732	15.414	0.072087	15.414	15.39	15.462	0	1272	34	0.854179	0.020277202	0.854179	346.71527		8.230591	-0.16068	-0.0011304	0.00075972	NaN	1.4396	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6012.4	+		31088	8188	17894	18392							0.06356868917032443
WVVQQKNK	8	Unmodified						0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	515.295633	1028.57671	2.2596	0.0011643	-1.3332	-0.00068701	0.92632	0.00047733	515.2957388759554	15.748	0.071948	15.735	15.663	15.735	-0.012611	1272	28	0.854179	0.016588628	0.8526596	346.71524		6.7333984	0.16068	0.0010333	-0.00075972	NaN	1.4396	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4107.4	+		31089	8188	17894	18392							0.06356868917032443
WWALWPLWLF	10	Unmodified	_WWALWPLWLF_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.37642646535	2	709.376426	1416.7383	0.9695	0.00068774	-0.89606	-0.00063565	0.07344	5.2097E-05	709.3753812246293	27.181	0.16888	27.181	27.109	27.277	0	1053	55	0.9882094	0.032908022	0.9882094	399.66412	0	13.309082						203	8	3	NaN	NaN	NaN	0.6965	1	20200	20200		8.2903	1.8604	1	20690	+		31090	12966	17895	18393	24822	24822					0.04660037950111473
WWALWPLWLF	10	Unmodified						0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	709.376426	1416.7383	0.9695	0.00068774	-0.89606	-0.00063565	0.07344	5.2097E-05	709.3753812246293	27.181	0.16888	27.181	27.109	27.277	0	1053	55	0.9882094	0.032908022	0.9882094	399.66412		13.309082	-0.16376	0.00068872	0.00075972	NaN	8.2903	203	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20690	+		31091	12966	17895	18393							0.04660037950111473
WWALWPLWLF	10	Unmodified						0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	709.376426	1416.7383	1.7595	0.0012481	-3.6524	-0.0025909	-1.8929	-0.0013428	709.3750863067617	27.518	0.072428	27.508	27.508	27.581	-0.009552	1053	22	0.9882094	0.012802362	0.98669	399.66415		5.177704	0.16376	-0.0032218	-0.00075972	NaN	8.2903	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2634.9	+		31092	12966	17895	18393							0.04660037950111473
WWGVPCAA	8	Unmodified	_WWGVPCAA_					0	0	0			REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.4025206050999	1	889.402521	888.395244	2.0015	0.0017802	-6.9134	-0.0061488	-4.9118	-0.0043686	889.3959254812776	22.694	0.16883	22.694	22.645	22.814	0	1311	37	0.83019954	0.022150517	0.83019954	168.84448	0	4.5049286						127	8	3	NaN	NaN	NaN	0.84876	1	5916	5916		0.39566	0.065779	1	10987	+		31093	11561	17896	18394	24823	24823					-0.053417673803892285
WWGVPCAA	8	Unmodified						0	0	0			REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	889.402521	888.395244	2.0015	0.0017802	-6.9134	-0.0061488	-4.9118	-0.0043686	889.3959254812776	22.694	0.16883	22.694	22.645	22.814	0	1311	37	0.83019954	0.022150517	0.83019954	168.84448		4.5049286	0.0070743	-0.00024571	0.00075972	NaN	0.39566	127	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10987	+		31094	11561	17896	18394							-0.053417673803892285
WWGVPCAA	8	Unmodified						0	0	0			REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	REV__ENST00000263856.8_1_2:86732285-86732549:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	889.402521	888.395244	1.5902	0.0014143	-6.2172	-0.0055296	-4.627	-0.0041153	889.3976525569997	22.693	0.14467	22.68	22.655	22.8	-0.01354	1311	34	0.83019954	0.020305753	0.8286801	168.84447		4.1297455	-0.0070743	0.00037343	-0.00075972	NaN	0.39566	105	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9179	+		31095	11561	17896	18394							-0.053417673803892285
WWPCMWCPE	9	Unmodified	_WWPCMWCPE_					0	0	0			REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF	REV__ENST00000487106.5_1_1:156024929-156025058:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.235015421	2	619.235015	1236.45548	1.8105	0.0011211	-0.2691	-0.00016664	1.5414	0.0009545	619.234999151188	17.429	0.45547	17.429	17.285	17.741	0	1200	64	0.89836043	0.038610697	0.89836043	363.83795	0	15.637421						663	20	4	NaN	NaN	NaN	0.58547	1	17426	17426		6.0903	0.39618	1	141580	+		31096	12430	17897	18395	24824	24824					-0.15329161103818478
WWPGLPLL	8	Unmodified	_WWPGLPLL_					0	0	0			REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	981.5556504287002	1	981.55565	980.548374	1.493	0.0014655	3.8031	0.0037329	5.2961	0.0051984	981.5619368723616	28.725	0.12065	28.716	28.668	28.789	-0.0083504	231	55	1.4820169	0.03196132	1.4804975	300.97754	0	6.4909363						159	6	3	NaN	NaN	NaN	0.60626	1	7737	7737		24.901	0.33911	1	14118	+		31097	12838	17898	18396	24825	24825					0.05732171007764464
WWRFWGHLLEG	11	Unmodified	_WWRFWGHLLEG_					0	0	0			REV__nc|ENSG00000183283|Q15038-5|DAZAP2	REV__nc|ENSG00000183283|Q15038-5|DAZAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.2508060858334	3	496.250806	1485.73059	2.1665	0.0010751	3.8957	0.0019332	6.0622	0.0030084	496.25253943251204	14.069	0.28821	14.069	13.997	14.285	0	1398	118	0.77658504	0.07212573	0.77658504	470.89996	0	43.735046						671	13	5	NaN	NaN	NaN	0.74155	1	20535	20535		1.8502	0.32465	1	143800	+		31098	13190	17899	18397	24826	24826					0.007152786825599833
WWRFWGHLLEG	11	Unmodified						0	0	0			REV__nc|ENSG00000183283|Q15038-5|DAZAP2	REV__nc|ENSG00000183283|Q15038-5|DAZAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	496.250806	1485.73059	2.1665	0.0010751	3.8957	0.0019332	6.0622	0.0030084	496.25253943251204	14.069	0.28821	14.069	13.997	14.285	0	1398	118	0.77658504	0.07212573	0.77658504	470.89996		43.735046	-0.19792	-0.0016403	0.00075972	NaN	1.8502	671	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143800	+		31099	13190	17899	18397							0.007152786825599833
WWRFWGHLLEG	11	Unmodified						0	0	0			REV__nc|ENSG00000183283|Q15038-5|DAZAP2	REV__nc|ENSG00000183283|Q15038-5|DAZAP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	496.250806	1485.73059	0.93534	0.00046416	5.828	0.0028921	6.7633	0.0033563	496.5878671726373	14.476	0.26353	14.465	14.345	14.609	-0.011218	1398	46	0.77658504	0.027770698	0.7750656	470.89996		16.839386	0.19792	0.0012364	-0.00075972	NaN	1.8502	208	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61682	+		31100	13190	17899	18397							0.007152786825599833
WWRRQLLP	8	Unmodified	_WWRRQLLP_					0	0	0		ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.5575704578333	3	385.55757	1153.65088	1.1325	0.00043666	1.9011	0.00073298	3.0336	0.0011696	385.558264925412	14.573	0.11998	14.573	14.525	14.645	0	1506	43	0.70979416	0.026022136	0.70979416	431.5394	0	15.820923						96	6	2	NaN	NaN	NaN	0.81756	1	14938	14938		6.8632	4.159	1	9401			31101	6763	17900	18398	24827	24827					0.08020256799227354
WWRRWRARRQP	11	Unmodified	_WWRRWRARRQP_					0	0	0			REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	827.45853338585	2	827.458533	1652.90251	1.3415	0.00111	7.5046	0.0062097	8.8461	0.0073198	827.4638692004517	36.926	0.048004	36.928	36.904	36.952	0.0022469	909	70	1.0757661	0.04183483	1.0742466	434.4734	0	16.895996						94	3	2	NaN	NaN	NaN	0.78074	1	19782	19782		0.11306	0.11306	1	7301.4	+		31102	11893	17901	18399	24828	24828					0.10217868213430847
WWRRWRARRQP	11	Unmodified						0	0	0			REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	827.458533	1652.90251	1.3415	0.00111	7.5046	0.0062097	8.8461	0.0073198	827.4638692004517	36.926	0.048004	36.928	36.904	36.952	0.0022469	909	70	1.0757661	0.04183483	1.0742466	434.4734		16.895996	3.832E-05	-0.00047289	0.00015003	NaN	0.11306	94	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7301.4	+		31103	11893	17901	18399							0.10217868213430847
WYFYPYGLQTF	11	Unmodified	_WYFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	742.8478957809	2	742.847896	1483.68124	1.677	0.0012457	-0.11458	-8.5114E-05	1.5624	0.0011606	742.8474823460043	35.866	0.0723	35.867	35.843	35.916	0.0011024	1008	46	1.0156195	0.027392387	1.0141001	410.57043	0	11.073547						66	4	2	NaN	NaN	NaN	0.67707	1	19522	19522		8.962	5.0339	1	4539.1			31104	1210	17902	18400	24829	24829					-0.04125474116926853
WYGWHFPEL	9	Unmodified	_WYGWHFPEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.7876412478	2	617.787641	1233.56073	0.53044	0.0003277	-0.63342	-0.00039132	-0.10298	-6.3617E-05	617.7871191665052	31.259	0.16891	31.259	31.211	31.38	0	1146	70	0.93142134	0.04221493	0.93142134	377.2375	0	17.097595						377	8	5	NaN	NaN	NaN	0.094712	1	17360	17360		36.586	22.161	1	94794			31105	597	17903	18401	24830	24830					-0.046708373198725894
WYGWHFPEL	9	Unmodified	_WYGWHFPEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.7876412478	2	617.787641	1233.56073	0.66047	0.00040803	2.5475	0.0015738	3.208	0.0019818	617.7872362166933	31.331	0.24131	31.326	31.229	31.47	-0.0050716	1143	97	0.9332562	0.058743358	0.93173677	377.9806	0	23.791779						740	11	5	NaN	NaN	NaN	0.056143	1	16633	16633		44.302	17.256	1	146060			31106	597	17903	18401	24831	24831					-0.046708373198725894
WYGWHFPEL	9	Unmodified						0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.787641	1233.56073	0.42938	0.00026527	-1.8499	-0.0011428	-1.4205	-0.00087757	617.78605807135	31.5	0.048277	31.495	31.495	31.544	-0.0044174	1149	52	0.92958635	0.031198978	0.9280669	376.49426		12.635956	0.11793	-0.0013964	-0.0016772	NaN	36.586	71	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7245.3			31107	597	17903	18401							-0.046708373198725894
WYGYHFPEL	9	Unmodified	_WYGYHFPEL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.2796490402001	2	606.279649	1210.54475	1.5451	0.00093673	2.0748	0.0012579	3.6198	0.0021946	606.2800232707147	27.977	0.19304	27.977	27.929	28.122	0	1155	100	0.92591566	0.06056273	0.92591566	375.0865	0	24.533844						410	9	3	NaN	NaN	NaN	0.078597	1	16731	16731		38.918	22.334	1	69225			31108	1319	17904	18402	24832	24832					-0.052105435567682434
WYGYHFPEL	9	Unmodified	_WYGYHFPEL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.2796490402001	2	606.279649	1210.54475	0.76173	0.00046182	1.3053	0.00079138	2.067	0.0012532	606.2793868041645	28.001	0.21718	27.992	27.943	28.161	-0.0089798	1152	88	0.92775106	0.053221762	0.9262317	375.83002	0	21.560028						434	10	3	NaN	NaN	NaN	0.41766	1	16054	16054		13.003	6.7526	1	75235			31109	1319	17904	18402	24833	24833					-0.052105435567682434
WYIWHFNWHNA	11	Unmodified	_WYIWHFNWHNA_					0	0	0			REV__ENSG00000103375|ENST00000219660|AQP8	REV__ENSG00000103375|ENST00000219660|AQP8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	787.3598276609501	2	787.359828	1572.7051	2.2967	0.0018083	-7.003	-0.0055139	-4.7063	-0.0037056	787.8549797508824	22.958	0.072338	22.945	22.921	22.993	-0.01354	1017	34	1.010141	0.020089984	1.0086216	408.1421	0	8.117218						49	4	2	NaN	NaN	NaN	0.77278	1	19708	19708		1.5054	0	1	3887.5	+		31110	8916	17905	18403	24834	24834					-0.058341958398614224
WYKRMRRLKFM	11	Unmodified	_WYKRMRRLKFM_					0	0	0			REV__ENST00000480568.1_1:147594391-147596156:-|nuORF	REV__ENST00000480568.1_1:147594391-147596156:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.47725456829994	4	404.477255	1613.87991	0.85046	0.00034399	1.8132	0.00073341	2.6637	0.0010774	404.4779698757552	12.484	0.047945	12.484	12.484	12.532	0	1503	31	0.711653	0.018585265	0.711653	574.945	0	15.015015						44	3	2	NaN	NaN	NaN	0.78125	1	20764	20764		0.023298	0	1	4896.4	+		31111	12378	17906	18404	24835	24835					0.09752764709264738
WYLLDDEYDLT	11	Unmodified	_WYLLDDEYDLT_					0	0	0			REV__LRP2|p.E2562D|1|0.1|ENSG00000081479|chr2:169205508-169205508|C/A|missense_variant	REV__LRP2|p.E2562D|1|0.1|ENSG00000081479|chr2:169205508-169205508|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.32719012855	2	723.32719	1444.63983	1.0623	0.00076836	8.0746	0.0058406	9.1369	0.006609	723.332104604019	26.915	0.048246	26.915	26.891	26.94	0	1038	43	0.997351	0.025586784	0.997351	403.28595	0	10.346222						65	3	2	NaN	NaN	NaN	0.7072	1	20346	20346		6.9844	2.2553	1	6269.2	+		31112	13057	17907	18405	24836	24836					-0.06470699666897417
WYLYWHSRLL	10	Unmodified	_WYLYWHSRLL_					0	0	0			REV__ENST00000558506.1_1_14:103801937-103802258:+|nuORF	REV__ENST00000558506.1_1_14:103801937-103802258:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	479.5873067704333	3	479.587307	1435.74009	2.0432	0.0009799	-0.88295	-0.00042345	1.1603	0.00055645	479.58674165115843	17.501	0.071941	17.501	17.453	17.525	0	1371	34	0.79324204	0.020349741	0.79324204	481.15463	0	12.343475						43	4	2	NaN	NaN	NaN	0.77514	1	20308	20308		1.6985	0.5964	1	3265.7	+		31113	12775	17908	18406	24837	24837					0.03965046968073693
WYMDNPQNL	9	Unmodified	_WYMDNPQNL_					0	0	0		nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1;ENSG00000169499|ENST00000617275|PLEKHA2	nc|ENSG00000107679|Q9HB21-2|PLEKHA1	nc|ENSG00000107679|Q9HB21-2|PLEKHA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.7582234938501	2	590.758223	1179.50189	1.627	0.00096119	-1.8074	-0.0010677	-0.18034	-0.00010653	590.7567272473387	25.563	0.193	25.552	25.503	25.696	-0.011602	1209	64	0.892844	0.038610697	0.8913246	361.7965	0	15.645752						257	9	3	NaN	NaN	NaN	0.35794	1	15219	15219		15.463	4.2923	1	37259			31114	1639	17909	18407	24838	24838					-0.08067681676493521
WYMDNPQNL	9	Unmodified						0	0	0		nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1;ENSG00000169499|ENST00000617275|PLEKHA2	nc|ENSG00000107679|Q9HB21-2|PLEKHA1	nc|ENSG00000107679|Q9HB21-2|PLEKHA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.758223	1179.50189	1.9389	0.0011454	-0.68624	-0.0004054	1.2527	0.00074004	590.7570424315809	25.564	0.12061	25.564	25.539	25.66	0	1209	73	0.892844	0.044119358	0.892844	361.7965		17.87796	0.0059387	0.00073954	0.00075972	NaN	15.463	177	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31494			31115	1639	17909	18407							-0.08067681676493521
WYSCSKDTSY	10	Unmodified	_WYSCSKDTSY_					0	0	0			REV__ENST00000485383.1_1_3:96068520-96068997:+|nuORF	REV__ENST00000485383.1_1_3:96068520-96068997:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.25297094045	2	620.252971	1238.49139	1.3584	0.00084253	8.4612	0.0052481	9.8195	0.0060906	620.2582794004226	28.556	0.14482	28.556	28.508	28.653	0	1173	73	0.91489893	0.04408604	0.91489893	370.5293	0	17.854614						204	7	2	NaN	NaN	NaN	0.70677	1	17481	17481		7.5876	0.047225	1	38371	+		31116	12417	17910	18408	24839	24839					-0.11831709121588574
WYYCLIGIISI	11	Unmodified	_WYYCLIGIISI_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	REV__nc|ENSG00000103534|Q6UXY8-4|TMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	672.3570420814501	2	672.357042	1342.69953	1.0273	0.00069074	-6.0228	-0.0040495	-4.9955	-0.0033588	672.3528667222156	40.679	0.095943	40.685	40.685	40.781	0.0067558	1215	31	0.8891654	0.018396974	0.88764596	359.79916	0	7.4443054						82	5	2	NaN	NaN	NaN	0.77166	1	18588	18588		1.7022	0	1	6335.4	+		31117	8920	17911	18409	24840	24840					0.041889445334390984
WYYRRTFGYRR	11	Unmodified	_WYYRRTFGYRR_					0	0	0			REV__RSRP1|p.R106W|1|0.1|ENSG00000117616|chr1:25246648-25246648|G/A|missense_variant	REV__RSRP1|p.R106W|1|0.1|ENSG00000117616|chr1:25246648-25246648|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.9478976269334	3	541.947898	1622.82186	1.4943	0.00080982	5.8441	0.0031672	7.3384	0.003977	541.9507459637596	19.924	0.26475	19.909	19.813	20.078	-0.014141	1395	64	0.7784366	0.03886217	0.77691716	471.655	0	23.5466						152	12	2	NaN	NaN	NaN	0.78125	1	19744	19744		0.023298	0.0037362	1	14351	+		31118	13308	17912	18410	24841	24841					0.03536542379856655
WYYSEERKL	9	Unmodified	_WYYSEERKL_					0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.31422013905	2	637.31422	1272.61389	2.1302	0.0013576	2.3508	0.0014982	4.481	0.0028558	637.3155434498668	17.837	0.14386	17.837	17.789	17.933	0	1125	46	0.9442611	0.027507722	0.9442611	382.3078	0	11.1371765						158	7	3	NaN	NaN	NaN	0.31471	1	18272	18272		17.97	3.1157	1	21278			31119	3229	17913	18411	24842	24842					-0.011515043278677695
WYYSEERKL	9	Unmodified						0	0	0		nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	nc|ENSG00000139641|Q9BSJ8-2|ESYT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.31422	1272.61389	2.139	0.0013632	2.7928	0.0017799	4.9318	0.0031431	637.3164849125309	17.858	0.12	17.844	17.796	17.916	-0.013786	1125	49	0.9442611	0.029343128	0.94274163	382.3078		11.88031	0.0035266	0.00032832	-0.00075972	NaN	17.97	168	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23899			31120	3229	17913	18411							-0.011515043278677695
YAAIQENAL	9	Unmodified	_YAAIQENAL_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;nc|ENSG00000075651|Q13393-3|PLD1;PLD1|p.N772Tfs*14|1|0.18|ENSG00000075651|chr3:171662085-171662085|T/-|frameshift_variant	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5047370701999	1	992.504737	991.497461	2.7358	0.0027153	-1.0604	-0.0010524	1.6754	0.0016629	992.5036314604033	21.537	0.024105	21.523	21.523	21.547	-0.014004	255	43	1.4678029	0.02488792	1.4662834	298.04523	0	5.0536194						40	2	2	NaN	NaN	NaN	0.21199	1	8099	8099		24.562	13.392	1	2620.7			31121	843	17914	18412	24843	24843					0.0013717717222334613
YAAIQENAL	9	Unmodified						0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;nc|ENSG00000075651|Q13393-3|PLD1;PLD1|p.N772Tfs*14|1|0.18|ENSG00000075651|chr3:171662085-171662085|T/-|frameshift_variant	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.504737	991.497461	2.1658	0.0021496	-0.22711	-0.00022541	1.9387	0.0019242	992.5041183719823	21.561	0.072208	21.561	21.537	21.609	0	261	37	1.4642475	0.021330237	1.4642475	297.3233		4.3312073	0.019062	0.00042053	-0.001018	NaN	24.562	50	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3394.9			31122	843	17914	18412							0.0013717717222334613
YAASFINLL	9	Unmodified	_YAASFINLL_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.5509589813001	1	1011.55096	1010.54368	1.0479	0.00106	1.2669	0.0012815	2.3148	0.0023416	1011.5523501090216	31.573	0.1207	31.573	31.501	31.621	0	132	88	1.5405227	0.051316142	1.5405227	312.73053	0	10.417328						211	6	2	NaN	NaN	NaN	0.27442	1	9005	9005		20.555	6.5139	1	23899			31123	857	17915	18413	24844	24844					0.03883242074334703
YAASFINLL	9	Unmodified						0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1011.55096	1010.54368	0.91568	0.00092626	2.898	0.0029315	3.8137	0.0038578	1011.5537224565805	31.572	0.14484	31.568	31.495	31.64	-0.0044155	129	88	1.5422925	0.051316142	1.540773	313.08978		10.417328	-0.0027441	0.00092172	0.00012514	NaN	20.555	241	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21126			31124	857	17915	18413							0.03883242074334703
YAASGPII	8	Unmodified	_YAASGPII_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.4297812131002	1	791.429781	790.422505	1.9507	0.0015438	4.6248	0.0036602	6.5755	0.005204	791.4324064774713	54.236	0.071865	54.236	54.212	54.284	0	393	37	1.3858368	0.021437168	1.3858368	282.38113	0	4.3680725						77	4	2	NaN	NaN	NaN	0.84651	1	4631	4631		1.6704	0	1	5746.2	+		31125	9549	17916	18414	24845	24845					0.018910394316776546
YAAVIEAVL	9	Unmodified	_YAAVIEAVL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5400599440001	1	948.54006	947.532783	1.0804	0.0010248	-1.0719	-0.0010168	0.0085004	8.063E-06	948.538663783126	30.172	0.12067	30.166	30.142	30.263	-0.0064106	315	121	1.4322147	0.07118392	1.4306953	291.0038	0	14.46347						307	6	3	NaN	NaN	NaN	0.042649	1	6899	6899		50.033	5.3941	1	48717			31126	1022	17917	18415	24846	24846					0.056918397000458754
YAAVIEAVL	9	Unmodified						0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	948.54006	947.532783	1.937	0.0018374	-1.2394	-0.0011756	0.69765	0.00066175	948.5385437191087	30.173	0.16893	30.173	30.149	30.318	0	315	112	1.4322147	0.06584859	1.4322147	291.0038		13.379425	0.0036914	-8.1256E-05	0.00075972	NaN	50.033	310	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49165			31127	1022	17917	18415							0.056918397000458754
YAAWIDSVL	9	Unmodified	_YAAWIDSVL_					0	0	0		ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5302235391998	1	1037.53022	1036.52295	0.9602	0.00099624	2.4718	0.0025645	3.432	0.0035608	1037.53222019159	32.73	0.14481	32.727	32.679	32.824	-0.0031052	183	55	1.510409	0.03191054	1.5088896	306.5139	0	6.475769						156	7	2	NaN	NaN	NaN	0.14945	1	9856	9856		28.667	16.618	1	16445			31128	5731	17918	18416	24847	24847					0.006146516946500924
YACNGCSG	8	Unmodified	_YACNGCSG_					0	0	0		nc|ENSG00000278570|Q9Y5X4-2|NR2E3;ENSG00000278570|ENST00000617575|NR2E3	nc|ENSG00000278570|Q9Y5X4-2|NR2E3	nc|ENSG00000278570|Q9Y5X4-2|NR2E3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.2545357389001	1	774.254536	773.247259	-0.052007	-4.0267E-05	-4.4311	-0.0034308	-4.4832	-0.0034711	774.2527767346413	58.482	0.095951	58.482	58.434	58.53	-0.00048065	591	46	1.26753	0.026989937	1.2660105	258.37262	0	5.5016174						112	5	3	NaN	NaN	NaN	0.84876	1	4323	4323		0.39566	0.065779	1	8299.6			31129	6206	17919	18417	24848	24848					-0.14843446696511364
YADAQCCGWP	10	Unmodified	_YADAQCCGWP_					0	0	0			REV__nc|ENSG00000073803|O43283-5|MAP3K13	REV__nc|ENSG00000073803|O43283-5|MAP3K13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.21005188075	2	557.210052	1112.40555	0.98416	0.00054838	7.0621	0.0039351	8.0462	0.0044834	557.7150383208176	37.482	0.072392	37.482	37.482	37.554	0	1272	28	0.854179	0.016590416	0.854179	346.36996	0	6.727417						37	4	2	NaN	NaN	NaN	0.2358	1	13357	13357		32.453	2.8544	1	2510	+		31130	8598	17920	18418	24849	24849					-0.14615572508114383
YADDSFTPAF	10	Unmodified	_YADDSFTPAF_					0	0	0		ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A	ENSG00000105514|ENST00000222120|RAB3D	ENSG00000105514|ENST00000222120|RAB3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1133.4785818992	1	1133.47858	1132.47131	1.9777	0.0022417	1.0664	0.0012087	3.0441	0.0034504	1133.4805617219752	27.302	0.12071	27.302	27.277	27.398	0	114	55	1.5511382	0.031832814	1.5511382	314.4288	0	6.452759						109	6	2	NaN	NaN	NaN	0.10964	1	14163	14163		44.638	22.803	1	10671			31131	1544	17921	18419	24850	24850					-0.08963136789884629
YADDSFTPAF	10	Unmodified	_YADDSFTPAF_					0	0	0		ENSG00000105514|ENST00000222120|RAB3D;ENSG00000105649|ENST00000222256|RAB3A	ENSG00000105514|ENST00000222120|RAB3D	ENSG00000105514|ENST00000222120|RAB3D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.4785818992	1	1133.47858	1132.47131	1.0075	0.001142	4.5922	0.0052052	5.5998	0.0063472	1133.480138195321	27.301	0.12066	27.291	27.267	27.387	-0.010126	114	82	1.5511382	0.047726512	1.5496187	314.42877	0	9.674561						114	6	2	NaN	NaN	NaN	0.2358	1	13716	13716		32.453	18.716	1	9709.3			31132	1544	17921	18419	24851	24851					-0.08963136789884629
YADGIFDLF	9	Unmodified	_YADGIFDLF_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.4985890597998	1	1060.49859	1059.49131	1.5131	0.0016047	0.10637	0.00011281	1.6195	0.0017175	1060.4979712853046	37.434	0.33704	37.434	37.362	37.699	0	156	97	1.5263584	0.056699872	1.5263584	309.66238	0	11.503052						725	15	5	NaN	NaN	NaN	0.0072287	1	11050	11050		98.041	48.08	1	151050			31133	4097	17922	18420	24852	24852					-0.036053410593012813
YADGIFDLF	9	Unmodified	_YADGIFDLF_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1060.4985890597998	1	1060.49859	1059.49131	1.45	0.0015377	-0.14488	-0.00015364	1.3051	0.0013841	1060.4980174521818	37.431	0.33691	37.434	37.362	37.699	0.0028229	153	88	1.5281296	0.0513705	1.5266101	310.0217	0	10.4219055						675	15	4	NaN	NaN	NaN	0.021105	1	10814	10814		70.6	31.141	1	133390			31134	4097	17922	18420	24853	24853					-0.036053410593012813
YADKWTLILR	10	Unmodified	_YADKWTLILR_					0	0	0			REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.8638801961001	2	639.86388	1277.71321	1.3104	0.00083851	-5.3469	-0.0034213	-4.0365	-0.0025828	639.8607677888061	39.093	0.2654	39.093	39.044	39.31	0	1179	100	0.9112251	0.060673952	0.9112251	368.91656	0	24.564362						730	12	3	NaN	NaN	NaN	0.74854	1	18381	18381		4.7291	1.1593	1	302160	+		31135	13533	17923	18421	24854	24854					0.08545938356905936
YADKWTLILR	10	Unmodified						0	0	0			REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.86388	1277.71321	1.3104	0.00083851	-5.3469	-0.0034213	-4.0365	-0.0025828	639.8607677888061	39.093	0.2654	39.093	39.044	39.31	0	1179	100	0.9112251	0.060673952	0.9112251	368.91656		24.564362	0.010748	-2.2698E-05	-0.00015879	NaN	4.7291	730	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302160	+		31136	13533	17923	18421							0.08545938356905936
YADPTKRLEL	10	Unmodified	_YADPTKRLEL_					0	0	0		ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	402.5556722910334	3	402.555672	1204.64519	1.3234	0.00053276	-2.0381	-0.00082045	-0.71467	-0.00028769	402.5548330671765	19.084	0.14388	19.084	19.012	19.156	0	1431	40	0.75620437	0.02409923	0.75620437	459.52625	0	14.644531						137	7	3	NaN	NaN	NaN	0.1802	1	16615	16615		30.798	19.237	1	15221			31137	3626	17924	18422	24855	24855					0.05105068706257043
YADPTKRLEL	10	Unmodified	_YADPTKRLEL_					0	0	0		ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.3298702032502	2	603.32987	1204.64519	1.4909	0.00089951	-0.4565	-0.00027542	1.0344	0.00062409	603.3297963570318	19.06	0.16786	19.06	19.012	19.18	0	1176	52	0.9130621	0.031222522	0.9130621	369.89996	0	12.648895						149	8	3	NaN	NaN	NaN	0.76025	1	16616	16616		3.9281	0	1	14204			31138	3626	17924	18422	24856	24856					0.05105068706257043
YADPTKRLEL	10	Unmodified	_YADPTKRLEL_					0	0	0		ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.3298702032502	2	603.32987	1204.64519	1.1929	0.00071969	-2.9427	-0.0017754	-1.7498	-0.0010557	603.3281812699524	19.13	0.14423	19.116	19.044	19.188	-0.014141	1176	46	0.9130621	0.027546287	0.91154265	369.89996	0	11.159576						129	7	3	NaN	NaN	NaN	0.20007	1	15951	15951		35.523	8.4765	1	12249			31139	3626	17924	18422	24857	24857					0.05105068706257043
YADPTKRLEL	10	Unmodified	_YADPTKRLEL_					0	0	0		ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	ENSG00000148308|ENST00000372097|GTF3C5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.5556722910334	3	402.555672	1204.64519	1.4304	0.00057581	0.16339	6.5773E-05	1.5938	0.00064159	402.55566024803846	19.13	0.12025	19.116	19.068	19.188	-0.014141	1434	37	0.75435036	0.022246659	0.7528309	458.3996	0	13.518738						118	6	3	NaN	NaN	NaN	0.61382	1	15952	15952		11.467	3.6632	1	13904			31140	3626	17924	18422	24858	24858					0.05105068706257043
YADPVADLL	9	Unmodified	_YADPVADLL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL;CTDSP1|p.A156T|1|0.41|ENSG00000144579|chr2:218403122-218403122|G/A|missense_variant	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	976.4985890598001	1	976.498589	975.491313	1.6537	0.0016149	-0.6069	-0.00059264	1.0468	0.0010222	976.4981110262281	30.848	0.28961	30.842	30.722	31.011	-0.0057545	294	151	1.4446791	0.08887601	1.4431597	293.41583	0	18.050812						768	13	3	NaN	NaN	NaN	0.021105	1	7602	7602		70.6	28.815	1	136260			31141	3481	17925	18423	24859	24859					0.002586589407201245
YADPVTDLL	9	Unmodified	_YADPVTDLL_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5091537461002	1	1006.50915	1005.50188	1.9883	0.0020012	1.2566	0.0012648	3.2449	0.003266	1006.5113594353633	30.198	0.24132	30.198	30.149	30.391	0	222	106	1.4873441	0.062137246	1.4873441	301.9555	0	12.614899						442	11	3	NaN	NaN	NaN	0.011942	1	8796	8796		87.021	25.75	1	65286			31142	4985	17926	18424	24860	24860					-0.0006535840484502842
YADPVTDLL	9	Unmodified	_YADPVTDLL_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5091537461002	1	1006.50915	1005.50188	1.2715	0.0012798	2.4324	0.0024482	3.7039	0.003728	1006.5120504217758	30.197	0.19303	30.19	30.118	30.311	-0.0064106	219	109	1.4891195	0.06389558	1.4876001	302.31592	0	12.971893						350	9	2	NaN	NaN	NaN	0.018156	1	8629	8629		74.332	32.547	1	59522			31143	4985	17926	18424	24861	24861					-0.0006535840484502842
YADTLFDIL	9	Unmodified	_YADTLFDIL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5404538745	1	1070.54045	1069.53318	1.4752	0.0015793	0.38995	0.00041746	1.8652	0.0019967	1070.5409680170346	36.372	0.19265	36.374	36.326	36.519	0.0016747	84	103	1.5688156	0.06009686	1.5672961	318.23755	0	12.190796						463	9	4	NaN	NaN	NaN	0.023074	1	11257	11257		68.108	18.275	1	64058			31144	3007	17927	18425	24862	24862					0.001192146292396501
YAEADIVTL	9	Unmodified	_YAEADIVTL_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.5091537461002	1	994.509154	993.501877	1.3707	0.0013631	-10.194	-0.010138	-8.8234	-0.008775	994.5002243638678	26.722	0.14482	26.711	26.614	26.759	-0.010645	255	79	1.4678029	0.046200752	1.4662834	298.03702	0	9.3810425						166	7	2	NaN	NaN	NaN	0.078597	1	8175	8175		38.918	18.362	1	18857			31145	5896	17928	18426	24863	24863					0.004866415951596537
YAEKIIEF	8	Unmodified	_YAEKIIEF_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.7711255163501	2	506.771126	1011.5277	1.002	0.00050776	-2.7401	-0.0013886	-1.7381	-0.00088083	506.76985873912025	33.287	0.1448	33.287	33.238	33.383	0	1332	76	0.8172735	0.046149373	0.8172735	331.80896	0	18.73642						216	7	3	NaN	NaN	NaN	0.75561	1	9044	9044		15.175	1.1338	1	29242	+		31146	9301	17929	18427	24864	24864					0.022395358374410534
YAEKLHRL	8	Unmodified	_YAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2956334554001	2	515.295633	1028.57671	2.3917	0.0012324	-2.6188	-0.0013495	-0.22715	-0.00011705	515.2941501616756	13.565	0.21619	13.565	13.493	13.709	0	1491	43	0.7190863	0.026010871	0.7190863	291.8805	0	10.557953						203	10	3	NaN	NaN	NaN	0.42133	1	9726	9726		35.296	0.85769	1	24231			31147	3759;7960	17930	18428	24865	24865					0.06356868917032443
YAELGVAI	8	Unmodified	_YAELGVAI_					0	0	0		ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.4559959636	1	835.455996	834.448719	1.5882	0.0013269	-0.41228	-0.00034444	1.176	0.00098246	835.4557892193092	30.415	0.12064	30.415	30.391	30.511	0	435	52	1.360811	0.030406475	1.360811	277.03195	0	6.190094						102	6	2	NaN	NaN	NaN	0.62311	1	5192	5192		23.85	3.295	1	10879			31148	2679	17931	18429	24866	24866					0.024873086031334424
YAEQLVVEL	9	Unmodified	_YAEQLVVEL_					0	0	0		ENST00000472829.1_1_3:121448028-121448843:-|nuORF;nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	ENST00000472829.1_1_3:121448028-121448843:-|nuORF	ENST00000472829.1_1_3:121448028-121448843:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1063.567002976	1	1063.567	1062.55973	1.3305	0.0014151	-3.7994	-0.004041	-2.469	-0.0026259	1063.5619196011708	28.918	0.19308	28.909	28.837	29.03	-0.0083504	123	136	1.5458313	0.079603314	1.5443119	313.60135	0	16.149017						502	9	4	NaN	NaN	NaN	0.017076	1	10988	10988		75.698	25.866	1	114580			31149	4881	17932	18430	24867	24867					0.030949035205594555
YAESRLPHF	9	Unmodified	_YAESRLPHF_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.2827230454001	2	560.282723	1118.55089	1.855	0.0010393	-10.827	-0.0060663	-8.9722	-0.005027	560.2763842983576	24.671	0.28953	24.671	24.647	24.936	0	1218	91	0.8873258	0.05519694	0.8873258	359.7869	0	22.38086						616	13	5	NaN	NaN	NaN	0.028349	1	13613	13613		61.271	0.28767	1	318420	+		31150	11188	17933	18431	24868	24868					-0.003640253252342518
YAFAGAAC	8	Unmodified	_YAFAGAAC_					0	0	0			REV__ENSG00000076201|ENST00000265562|PTPN23	REV__ENSG00000076201|ENST00000265562|PTPN23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	773.32868696	1	773.328687	772.32141	1.713	0.0013247	1.356	0.0010486	3.069	0.0023734	773.3292589281946	24.767	0.072397	24.767	24.743	24.816	0	543	40	1.296287	0.023343801	1.296287	264.23993	0	4.758484						59	4	2	NaN	NaN	NaN	0.81214	1	4384	4384		7.5902	0.79624	1	3482.7	+		31151	8620	17934	18432	24869	24869					-0.07385735542698058
YAFSGVEEL	9	Unmodified	_YAFSGVEEL_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4778536177001	1	1014.47785	1013.47058	2.0078	0.0020369	0.13588	0.00013784	2.1437	0.0021747	1014.4761282117187	26.65	0.12068	26.65	26.625	26.746	0	216	49	1.4908947	0.028407097	1.4908947	302.64413	0	5.7664795						122	6	3	NaN	NaN	NaN	0.074859	1	9113	9113		39.459	18.903	1	9239.6			31152	3539	17935	18433	24870	24870					-0.03561931438935062
YAFSNFYYTF	10	Unmodified	_YAFSNFYYTF_					0	0	0		ENSG00000188833|ENST00000371506|ENTPD8	ENSG00000188833|ENST00000371506|ENTPD8	ENSG00000188833|ENST00000371506|ENTPD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	661.7900465509999	2	661.790047	1321.56554	1.0276	0.00068003	-3.7441	-0.0024778	-2.7165	-0.0017978	661.7881647816135	31.524	0.26547	31.519	31.447	31.712	-0.0044174	1122	55	0.9460945	0.03300035	0.9445751	382.89777	0	13.355713						347	12	4	NaN	NaN	NaN	0.73444	1	18268	18268		5.6942	1.7661	1	50571			31153	5568	17936	18434	24871	24871					-0.08237997967785304
YAFYDFEL	8	Unmodified	_YAFYDFEL_					0	0	0		nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1067.4720399583	1	1067.47204	1066.46476	1.1894	0.0012697	0.2217	0.00023665	1.4111	0.0015063	1067.4726740544252	33.214	0.12067	33.214	33.19	33.311	0	138	37	1.5369828	0.021244407	1.5369828	311.79163	0	4.309601						76	6	2	NaN	NaN	NaN	0.69631	1	11388	11388		19.285	4.8597	1	5141.9			31154	1445	17937	18435	24872	24872					-0.0658102995059835
YAFYDFEL	8	Unmodified						0	0	0		nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1067.47204	1066.46476	1.1445	0.0012217	0.51728	0.00055218	1.6617	0.0017739	1067.4726153399008	33.213	0.096539	33.21	33.186	33.283	-0.0024757	135	37	1.5387528	0.021242142	1.5372335	312.1507		4.309143	-0.0019076	0.00020445	0.00012532	NaN	19.285	75	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4378.6			31155	1445	17937	18435							-0.0658102995059835
YAGEPYVAI	9	Unmodified	_YAGEPYVAI_					0	0	0		ENST00000486097.1_1_7:74197824-74199646:+|nuORF;ENST00000398421.6_1_7:74197704-74202433:+|nuORF;ENST00000455062.2_1_7:74197704-74203407:+|nuORF;ENST00000423083.1_1_7:72644023-72649727:+|nuORF;nc|ENSG00000165178|A8MVU1|NCF1C;ENSG00000158517|ENST00000289473|NCF1;nc|ENSG00000290838|A6NI72|NCF1B	ENST00000486097.1_1_7:74197824-74199646:+|nuORF	ENST00000486097.1_1_7:74197824-74199646:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	491.74765042005	2	491.74765	981.480748	0.75582	0.00037167	1.8447	0.00090712	2.6005	0.0012788	491.74879480744846	29.256	0.21716	29.248	29.2	29.417	-0.0077229	1311	61	0.83019954	0.036917448	0.8286801	337.19528	0	14.994476						370	10	4	NaN	NaN	NaN	0.11467	1	7762	7762		33.698	2.1373	1	80862			31156	3992	17938	18436	24873	24873					-0.010733237137174001
YAGGAGEG	8	Unmodified	_YAGGAGEG_					0	0	0			REV__ENST00000462379.1_1_1:2435075-2436649:+|nuORF	REV__ENST00000462379.1_1_1:2435075-2436649:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	341.145560862	2	341.145561	680.276569	1.9523	0.00066602	3.1398	0.0010711	5.092	0.0017371	341.1468962262578	28.436	0.24134	28.436	28.388	28.629	0	1524	103	0.698637	0.063224256	0.698637	285.48898	0	25.835754						425	11	4	NaN	NaN	NaN	0.84692	1	2844	2844		1.4396	0	1	85162	+		31157	9995	17939	18437	24874	24874					-0.07635843084369753
YAHNNYQA	8	Unmodified	_YAHNNYQA_					0	0	0		ENST00000374829.2_1_1:21901133-21904138:+|nuORF;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL;ENSG00000162551|ENST00000374840|ALPL	ENST00000374829.2_1_1:21901133-21904138:+|nuORF	ENST00000374829.2_1_1:21901133-21904138:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.71467326994997	2	490.714673	979.414794	0.91686	0.00044992	-6.3555	-0.0031188	-5.4387	-0.0026688	490.7121178606815	30.221	0.072393	30.214	30.166	30.238	-0.0064106	1350	31	0.80618626	0.018484712	0.8046668	327.4516	0	7.5079956						71	4	2	NaN	NaN	NaN	0.80692	1	7688	7688		8.2903	0	1	6455.5			31158	4145	17940	18438	24875	24875					-0.07573719835909287
YAIDEYYRM	9	Oxidation (M)	_YAIDEYYRM(Oxidation (M))_		YAIDEYYRM(1)		YAIDEYYRM(100)	0	0	1		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.2711636935999	2	620.271164	1238.52777	1.6403	0.0010175	-1.6949	-0.0010513	-0.054526	-3.3821E-05	620.2702448145772	19.78	0.21626	19.78	19.708	19.924	0	1152	70	0.92775106	0.04222858	0.92775106	375.73428	0	17.102356						253	10	2	NaN	NaN	NaN	0.0042638	1	17486	17486		104.2	56.196	1	57527			31159	7833	17941	18439	24876	24876		637			-0.08194832224921811
YAIDEYYRM	9	Oxidation (M)	_YAIDEYYRM(Oxidation (M))_		YAIDEYYRM(1)		YAIDEYYRM(69)	0	0	1		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.2711636935999	2	620.271164	1238.52777	1.037	0.0006432	-1.3565	-0.00084141	-0.31955	-0.00019821	620.7718953621866	19.779	0.19247	19.765	19.741	19.934	-0.014141	1155	73	0.92591566	0.044066966	0.9243962	374.99097	0	17.846924						279	9	4	NaN	NaN	NaN	0.022082	1	16748	16748		69.363	35.938	1	51848			31160	7833	17941	18439	24877	24877		637			-0.08194832224921811
YAIDEYYRM	9	Unmodified	_YAIDEYYRM_					0	0	0		KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion;KIAA0391-FAM177A1|2|fusion;KIAA0391-FAM177A1|4|fusion;nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	KIAA0391-FAM177A1|1|fusion	KIAA0391-FAM177A1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.2737063825499	2	612.273706	1222.53286	0.9356	0.00057285	-1.2707	-0.000778	-0.33507	-0.00020515	612.2731915964736	22.79	0.21692	22.776	22.68	22.896	-0.01354	1152	79	0.92775106	0.047739267	0.9262317	375.78848	0	19.336945						280	10	4	NaN	NaN	NaN	0.070055	1	16342	16342		40.154	20.99	1	46616			31161	7833	17941	18440	24878	24878					-0.06950528362290243
YAIESNLFI	9	Unmodified	_YAIESNLFI_					0	0	0			REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.28185737815	2	535.281857	1068.54916	0.97137	0.00051995	3.1959	0.0017107	4.1673	0.0022307	535.2836345798476	24.574	0.072407	24.562	24.538	24.61	-0.012392	1269	61	0.8560222	0.03685367	0.85450274	347.2917	0	14.951691						121	4	3	NaN	NaN	NaN	0.10956	1	11218	11218		34.439	1.0135	1	13286	+		31162	13418	17942	18441	24879	24879					0.01762920866121931
YAIESNLFI	9	Unmodified						0	0	0			REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	535.281857	1068.54916	1.5678	0.00083922	-1.5506	-0.00083002	0.017178	9.1953E-06	535.2817136806657	24.55	0.096405	24.55	24.454	24.55	0	1266	70	0.85786515	0.04237944	0.85786515	348.03943		17.193512	-0.0057949	-0.0028564	0.0016812	NaN	34.439	89	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13706	+		31163	13418	17942	18441							0.01762920866121931
YAIESNLFI	9	Unmodified						0	0	0			REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	REV__tr|U7SKQ7|U7SKQ7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02109PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	535.281857	1068.54916	0.97137	0.00051995	3.1959	0.0017107	4.1673	0.0022307	535.2836345798476	24.574	0.072407	24.562	24.538	24.61	-0.012392	1269	61	0.8560222	0.03685367	0.85450274	347.2917		14.951691	0.0057949	0.0022251	-0.0016812	NaN	34.439	121	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13286	+		31164	13418	17942	18441							0.01762920866121931
YAIEVDPVL	9	Unmodified	_YAIEVDPVL_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5455392524001	1	1018.54554	1017.53826	2.6178	0.0026663	1.1193	0.00114	3.737	0.0038063	1018.5475725021403	29.353	0.14475	29.353	29.329	29.474	0	201	187	1.4997677	0.11015952	1.4997677	304.42896	0	22.360626						525	7	3	NaN	NaN	NaN	0.0072287	1	9281	9281		98.041	23.709	1	357120			31165	2333	17943	18442	24880	24880					0.030195184918625273
YAIEVDPVL	9	Unmodified	_YAIEVDPVL_					0	0	0		NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	NT5C3A|p.T154Yfs*2|1|0.4|ENSG00000122643|chr7:33019720-33019721|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5455392524001	1	1018.54554	1017.53826	2.0442	0.0020821	1.5133	0.0015414	3.5575	0.0036235	1018.5476170308092	29.352	0.16891	29.344	29.32	29.489	-0.0077209	198	175	1.5015416	0.10299778	1.5000222	304.78906	0	20.906921						554	8	3	NaN	NaN	NaN	0.00010594	1	9101	9101		122.55	48.218	1	367370			31166	2333	17943	18442	24881	24881					0.030195184918625273
YAIGTASG	8	Unmodified	_YAIGTASG_					0	0	0			REV__ENST00000461159.6_1_7:18330122-18868840:+|nuORF	REV__ENST00000461159.6_1_7:18330122-18868840:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	739.3620955784	1	739.362096	738.354819	1.2357	0.00091361	4.7724	0.0035285	6.008	0.0044421	739.3659115461472	27.832	0.12073	27.822	27.774	27.895	-0.009552	546	130	1.294491	0.077329874	1.2929716	264.08563	0	15.775864						326	6	3	NaN	NaN	NaN	0.76633	1	3814	3814		13.737	1.1492	1	31739	+		31167	8479	17944	18443	24882	24882					-0.024824104991353124
YAILIGVIL	9	Unmodified	_YAILIGVIL_					0	0	0			REV__ENSG00000114771|ENST00000232892|AADAC	REV__ENSG00000114771|ENST00000232892|AADAC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.6284810208002	1	974.628481	973.621205	1.5261	0.0014874	0.7043	0.00068643	2.2304	0.0021738	974.6290575891402	38.946	0.12013	38.951	38.879	38.999	0.0046844	126	97	1.544062	0.05662763	1.5425426	313.60898	0	11.501465						297	6	3	NaN	NaN	NaN	0.055365	1	7571	7571		44.632	0	1	37445	+		31168	9169	17945	18444	24883	24883					0.13333880010532084
YAILIGVIL	9	Unmodified						0	0	0			REV__ENSG00000114771|ENST00000232892|AADAC	REV__ENSG00000114771|ENST00000232892|AADAC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.628481	973.621205	1.5261	0.0014874	0.7043	0.00068643	2.2304	0.0021738	974.6290575891402	38.946	0.12013	38.951	38.879	38.999	0.0046844	126	97	1.544062	0.05662763	1.5425426	313.60898		11.501465	-0.01075	6.9605E-05	0.00012504	NaN	44.632	297	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37445	+		31169	9169	17945	18444							0.13333880010532084
YAINQPDVL	9	Unmodified	_YAINQPDVL_					0	0	0		nc|ENSG00000197024|Q8TD17-2|ZNF398;ENSG00000197024|ENST00000475153|ZNF398	nc|ENSG00000197024|Q8TD17-2|ZNF398	nc|ENSG00000197024|Q8TD17-2|ZNF398	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.5360371985998	1	1032.53604	1031.52876	1.4209	0.0014672	0.17792	0.00018371	1.5989	0.0016509	1032.5358681746136	24.598	0.048273	24.598	24.574	24.623	0	192	61	1.5050892	0.035474896	1.5050892	305.45374	0	7.1995544						100	3	2	NaN	NaN	NaN	0.048656	1	9849	9849		47.482	5.1639	1	12350			31170	5671	17946	18445	24884	24884					0.014257502063173888
YAINQPDVL	9	Unmodified	_YAINQPDVL_					0	0	0		nc|ENSG00000197024|Q8TD17-2|ZNF398;ENSG00000197024|ENST00000475153|ZNF398	nc|ENSG00000197024|Q8TD17-2|ZNF398	nc|ENSG00000197024|Q8TD17-2|ZNF398	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7716568326	2	516.771657	1031.52876	1.3743	0.00071021	-3.873	-0.0020014	-2.4987	-0.0012912	516.769776598966	24.623	0.072401	24.61	24.562	24.634	-0.012394	1302	46	0.8357362	0.027680635	0.8342168	339.21643	0	11.235291						70	4	2	NaN	NaN	NaN	0.20577	1	9633	9633		24.961	7.162	1	6812.5			31171	5671	17946	18445	24885	24885					0.014257502063173888
YAIREEIVL	9	Unmodified	_YAIREEIVL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.3162315117501	2	553.316232	1104.61791	1.195	0.00066124	-0.9663	-0.00053467	0.22874	0.00012656	553.3158922953196	24.188	0.072433	24.188	24.14	24.213	0	1194	61	0.902037	0.0367741	0.902037	365.808	0	14.913208						186	4	4	NaN	NaN	NaN	0.048791	1	13054	13054		53.14	28.179	1	76300			31172	5667	17947	18446	24886	24886					0.06978585165848017
YAIREEIVL	9	Unmodified	_YAIREEIVL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3162315117501	2	553.316232	1104.61791	1.3902	0.0007692	-0.45761	-0.0002532	0.93256	0.000516	553.315798458319	24.212	0.096506	24.199	24.151	24.248	-0.012749	1194	73	0.902037	0.044105053	0.9005176	365.808	0	17.88617						153	5	4	NaN	NaN	NaN	0.055363	1	12709	12709		50.315	32.345	1	51685			31173	5667	17947	18446	24887	24887					0.06978585165848017
YAISAGVSL	9	Unmodified	_YAISAGVSL_					0	0	0		ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12	ENSG00000161654|ENST00000293406|LSM12	ENSG00000161654|ENST00000293406|LSM12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.4774596872002	1	880.47746	879.470183	2.0964	0.0018458	-3.3797	-0.0029757	-1.2833	-0.0011299	880.4746112186925	25.467	0.07239	25.467	25.443	25.515	0	381	46	1.3929803	0.026780725	1.3929803	283.34564	0	5.447418						60	4	2	NaN	NaN	NaN	0.20577	1	5792	5792		24.961	3.126	1	4331.8			31174	4101	17948	18447	24888	24888					0.025626936318644766
YAISAGVSL	9	Unmodified	_YAISAGVSL_					0	0	0		ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12	ENSG00000161654|ENST00000293406|LSM12	ENSG00000161654|ENST00000293406|LSM12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4774596872002	1	880.47746	879.470183	2.3824	0.0020976	0.37861	0.00033336	2.761	0.002431	880.4775287914928	25.467	0.048252	25.455	25.455	25.503	-0.012011	378	40	1.3947657	0.023212433	1.3932463	283.7088	0	4.7216187						69	3	3	NaN	NaN	NaN	0.20577	1	5672	5672		24.961	4.4056	1	4109.5			31175	4101	17948	18447	24889	24889					0.025626936318644766
YAKEPVPLYFD	11	Unmodified	_YAKEPVPLYFD_					0	0	0			REV__ENST00000300403.10_1_20:30388876-30389098:+|nuORF	REV__ENST00000300403.10_1_20:30388876-30389098:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.3399035733	2	671.339904	1340.66525	0.73092	0.0004907	6.9553	0.0046694	7.6863	0.0051601	671.8449978053907	37.53	0.096432	37.53	37.482	37.578	0	1200	61	0.89836043	0.036770105	0.89836043	363.52548	0	14.879211						189	5	3	NaN	NaN	NaN	0.76654	1	19421	19421		2.5994	1.094	1	14555	+		31176	11648	17949	18448	24890	24890					0.008548196461788393
YAKEPVPLYFD	11	Unmodified						0	0	0			REV__ENST00000300403.10_1_20:30388876-30389098:+|nuORF	REV__ENST00000300403.10_1_20:30388876-30389098:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	671.339904	1340.66525	0.73092	0.0004907	6.9553	0.0046694	7.6863	0.0051601	671.8449978053907	37.53	0.096432	37.53	37.482	37.578	0	1200	61	0.89836043	0.036770105	0.89836043	363.52548		14.879211	-0.00014816	-0.0010622	-0.0029165	NaN	2.5994	189	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14555	+		31177	11648	17949	18448							0.008548196461788393
YAKLGGPD	8	Unmodified	_YAKLGGPD_					0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	410.71361063745	2	410.713611	819.412668	1.2165	0.00049962	3.2135	0.0013198	4.43	0.0018195	410.714412519196	20.525	0.096207	20.525	20.501	20.597	0	1377	28	0.7895419	0.01665157	0.7895419	321.55664	0	6.7816772						61	5	2	NaN	NaN	NaN	0.80692	1	5013	5013		8.2903	2.8244	1	4061.3	+		31178	9117	17950	18449	24891	24891					-0.004261485737060866
YAKLGGPD	8	Unmodified						0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	410.713611	819.412668	1.2165	0.00049962	3.2135	0.0013198	4.43	0.0018195	410.714412519196	20.525	0.096207	20.525	20.501	20.597	0	1377	28	0.7895419	0.01665157	0.7895419	321.55664		6.7816772	-0.005055	0.00076295	-0.00016537	NaN	8.2903	61	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4061.3	+		31179	9117	17950	18449							-0.004261485737060866
YAKLGGPD	8	Unmodified						0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	410.713611	819.412668	1.848	0.00075899	1.4339	0.00058891	3.2818	0.0013479	410.71421691025165	20.549	0.072231	20.535	20.511	20.584	-0.014141	1374	25	0.791392	0.014800608	0.7898726	322.31018		6.0278625	0.005055	-0.00069891	0.00016537	NaN	8.2903	43	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2905.5	+		31180	9117	17950	18449							-0.004261485737060866
YALASGAS	8	Unmodified	_YALASGAS_					0	0	0			REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	739.3620955784	1	739.362096	738.354819	1.5406	0.0011391	5.6236	0.0041579	7.1642	0.005297	739.365821570243	27.808	0.14479	27.808	27.784	27.929	0	549	133	1.292695	0.07914102	1.292695	263.7192	0	16.14534						316	7	2	NaN	NaN	NaN	0.76633	1	3889	3889		13.737	0	1	34317	+		31181	9811	17951	18450	24892	24892					-0.024824104991353124
YALASGAS	8	Unmodified						0	0	0			REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	739.362096	738.354819	1.5406	0.0011391	5.6236	0.0041579	7.1642	0.005297	739.365821570243	27.808	0.14479	27.808	27.784	27.929	0	549	133	1.292695	0.07914102	1.292695	263.7192		16.14534	-0.0068736	0.00033786	-0.00013831	NaN	13.737	316	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34317	+		31182	9811	17951	18450							-0.024824104991353124
YALASGAS	8	Unmodified						0	0	0			REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	739.362096	738.354819	1.2357	0.00091361	4.7724	0.0035285	6.008	0.0044421	739.3659115461472	27.832	0.12073	27.822	27.774	27.895	-0.009552	546	130	1.294491	0.077329874	1.2929716	264.08563		15.775864	0.0068736	-0.0002915	0.00013831	NaN	13.737	326	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31739	+		31183	9811	17951	18450							-0.024824104991353124
YALDLIDKL	9	Unmodified	_YALDLIDKL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.30533247445	2	532.305332	1062.59611	1.6807	0.00089467	-0.83163	-0.00044268	0.84911	0.00045199	532.3049266221303	28.846	0.16895	28.846	28.774	28.943	0	1230	52	0.8799654	0.031290054	0.8799654	357.03104	0	12.695435						163	8	3	NaN	NaN	NaN	0.064504	1	11250	11250		40.957	13.661	1	24027			31184	3042	17952	18451	24893	24893					0.06731780417271693
YALDLIDKL	9	Unmodified	_YALDLIDKL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.30533247445	2	532.305332	1062.59611	0.63617	0.00033863	-0.60601	-0.00032258	0.030157	1.6053E-05	532.3051344021441	28.869	0.12069	28.861	28.813	28.933	-0.0083504	1227	43	0.88180584	0.02576691	0.8802864	357.77774	0	10.454468						136	6	3	NaN	NaN	NaN	0.10945	1	10995	10995		34.454	13.899	1	21220			31185	3042	17952	18451	24894	24894					0.06731780417271693
YALGAAAA	8	Unmodified	_YALGAAAA_					0	0	0			REV__ENSG00000125533|ENST00000612929|BHLHE23	REV__ENSG00000125533|ENST00000612929|BHLHE23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	707.3722663341999	1	707.372266	706.36499	0.7471	0.00052848	-10.576	-0.007481	-9.8286	-0.0069525	707.3643155307387	20.718	0.16861	20.704	20.656	20.825	-0.014086	639	58	1.2387238	0.034238458	1.2372043	252.91727	0	6.9906616						191	8	2	NaN	NaN	NaN	0.83849	1	3280	3280		4.0537	0	1	27231			31186	9396	17953	18452	24895	24895					6.197226082349516E-05
YALGAAAA	8	Unmodified						0	0	0			REV__ENSG00000125533|ENST00000612929|BHLHE23	REV__ENSG00000125533|ENST00000612929|BHLHE23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	707.372266	706.36499	0.95502	0.00067556	-11.021	-0.0077962	-10.066	-0.0071206	707.3643010254341	20.694	0.19278	20.694	20.646	20.838	0	642	64	1.2369217	0.03785062	1.2369217	252.54935		7.72818	-0.0051932	-0.00015282	-0.00014129	NaN	4.0537	198	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27709			31187	9396	17953	18452							6.197226082349516E-05
YALGAAAA	8	Unmodified						0	0	0			REV__ENSG00000125533|ENST00000612929|BHLHE23	REV__ENSG00000125533|ENST00000612929|BHLHE23	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	707.372266	706.36499	0.7471	0.00052848	-10.576	-0.007481	-9.8286	-0.0069525	707.3643155307387	20.718	0.16861	20.704	20.656	20.825	-0.014086	639	58	1.2387238	0.034238458	1.2372043	252.91727		6.9906616	0.0051932	0.00016238	0.00014129	NaN	4.0537	191	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27231			31188	9396	17953	18452							6.197226082349516E-05
YALGAVSNFMS	11	Unmodified	_YALGAVSNFMS_					0	0	0		ENSG00000269743|ENST00000594199|SLC25A53	ENSG00000269743|ENST00000594199|SLC25A53	ENSG00000269743|ENST00000594199|SLC25A53	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.2762490715	2	580.276249	1158.53795	1.5547	0.00090217	-5.2499	-0.0030464	-3.6952	-0.0021442	580.2736181919023	11.454	0.12004	11.446	11.398	11.518	-0.0075302	1233	37	0.87812483	0.02208829	0.8766054	355.90646	0	8.952454						132	6	3	NaN	NaN	NaN	0.64656	1	14582	14582		10.965	0.36015	1	8811.2			31189	6172	17954	18453	24896	24896					-0.03498224499639946
YALILGGA	8	Unmodified	_YALILGGA_					0	0	0			REV__ENSG00000176076|ENST00000372101|KCNE5	REV__ENSG00000176076|ENST00000372101|KCNE5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	777.4505166552001	1	777.450517	776.44324	1.6917	0.0013152	6.6611	0.0051786	8.3528	0.0064939	777.4557753798986	35.844	0.26514	35.844	35.795	36.061	0	594	118	1.265731	0.07021904	1.265731	257.98734	0	14.312363						644	12	4	NaN	NaN	NaN	0.84651	1	4450	4450		1.6704	0.2308	1	198110	+		31190	10742	17955	18454	24897	24897					0.04607629811334846
YALILGGA	8	Unmodified						0	0	0			REV__ENSG00000176076|ENST00000372101|KCNE5	REV__ENSG00000176076|ENST00000372101|KCNE5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	777.450517	776.44324	1.6917	0.0013152	6.6611	0.0051786	8.3528	0.0064939	777.4557753798986	35.844	0.26514	35.844	35.795	36.061	0	594	118	1.265731	0.07021904	1.265731	257.98734		14.312363	0.00053533	-0.00021085	-0.00013975	NaN	1.6704	644	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198110	+		31191	10742	17955	18454							0.04607629811334846
YALKAKSHV	9	Unmodified	_YALKAKSHV_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;NPFFR2|p.T494Pfs*15|1|0.33|ENSG00000056291|chr4:72147721-72147721|A/-|frameshift_variant;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	508.79800896885	2	508.798009	1015.58147	1.9117	0.00097266	-1.1511	-0.00058566	0.76061	0.000387	508.79514998576633	24.14	0.072433	24.14	24.14	24.213	0	1299	28	0.8375814	0.016608357	0.8375814	340.03564	0	6.7425537						36	4	2	NaN	NaN	NaN	0.36492	1	9216	9216		15.175	4.5704	1	1989.2			31192	611	17956	18455	24898	24898					0.07429753059795985
YALKNVTIL	9	Unmodified	_YALKNVTIL_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.6244582754	1	1034.62446	1033.61718	1.3818	0.0014296	-10.344	-0.010702	-8.9621	-0.0092724	1034.6133989458383	36.109	0.14479	36.109	36.061	36.205	0	78	58	1.5723488	0.03355682	1.5723488	319.09546	0	6.810089						174	7	3	NaN	NaN	NaN	0.056143	1	9943	9943		44.302	1.9848	1	18214			31193	5604	17957	18456	24899	24899					0.10171790516801593
YALLYDPVI	9	Unmodified	_YALLYDPVI_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5819247586999	1	1066.58192	1065.57465	1.6672	0.0017782	-4.5166	-0.0048173	-2.8494	-0.0030391	1066.5744303708282	32.611	0.16895	32.611	32.587	32.756	0	102	94	1.5582114	0.05478549	1.5582114	316.10144	0	11.113892						364	8	3	NaN	NaN	NaN	0.020004	1	11372	11372		71.993	37.554	1	55816			31194	5520	17958	18457	24900	24900					0.044483953885674055
YALLYDPVI	9	Unmodified	_YALLYDPVI_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5819247586999	1	1066.58192	1065.57465	0.89469	0.00095426	-5.3701	-0.0057277	-4.4754	-0.0047734	1066.5744793983092	32.61	0.19305	32.607	32.558	32.751	-0.0031052	105	91	1.5564433	0.053021073	1.5549239	315.74277	0	10.755951						394	9	3	NaN	NaN	NaN	0.0081087	1	11110	11110		96.245	56.787	1	58868			31195	5520	17958	18457	24901	24901					0.044483953885674055
YALMEKDAL	9	Unmodified	_YALMEKDAL_					0	0	0		nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000422279.6_1_17:27041917-27042501:-|nuORF;ENST00000474704.1_1_17:27041945-27042505:-|nuORF;ENST00000484161.5_1_17:27041663-27042501:-|nuORF	nc|ENSG00000109113|Q9BZG1-4|RAB34	nc|ENSG00000109113|Q9BZG1-4|RAB34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.26789272315	2	527.267893	1052.52123	1.3181	0.00069501	-2.4801	-0.0013077	-1.162	-0.00061268	527.2666859628904	21.079	0.1445	21.079	21.031	21.175	0	1260	67	0.8615505	0.040534675	0.8615505	349.60233	0	16.448273						236	7	3	NaN	NaN	NaN	0.51576	1	10737	10737		8.962	0	1	25881			31196	1713	17959	18458	24902	24902					-0.0029272538561144756
YALMEKDAL	9	Unmodified						0	0	0		nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000422279.6_1_17:27041917-27042501:-|nuORF;ENST00000474704.1_1_17:27041945-27042505:-|nuORF;ENST00000484161.5_1_17:27041663-27042501:-|nuORF	nc|ENSG00000109113|Q9BZG1-4|RAB34	nc|ENSG00000109113|Q9BZG1-4|RAB34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.267893	1052.52123	1.0175	0.00053647	-5.0065	-0.0026397	-3.989	-0.0021033	527.2652912208017	21.248	0.072233	21.234	21.186	21.258	-0.014004	1269	88	0.8560222	0.053452313	0.85450274	347.359		21.690002	0.077412	-0.0018336	-0.0035239	NaN	8.962	132	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17351			31197	1713	17959	18458							-0.0029272538561144756
YALMSDNLL	9	Unmodified	_YALMSDNLL_					0	0	0		nc|ENSG00000130487|Q96G42|KLHDC7B;KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B	nc|ENSG00000130487|Q96G42|KLHDC7B	nc|ENSG00000130487|Q96G42|KLHDC7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	520.26006769105	2	520.260068	1038.50558	1.5227	0.00079219	-3.6779	-0.0019135	-2.1552	-0.0011213	520.2579326178609	26.36	0.096529	26.349	26.324	26.421	-0.011135	1275	79	0.85233563	0.047956467	0.8508162	345.92334	0	19.463287						197	5	3	NaN	NaN	NaN	0.42773	1	9922	9922		12.588	0.53918	1	19548			31198	2646	17960	18459	24903	24903					-0.012130119026551256
YALPGGGG	8	Unmodified	_YALPGGGG_					0	0	0		nc|ENSG00000175065|Q86SJ6-2|DSG4	nc|ENSG00000175065|Q86SJ6-2|DSG4	nc|ENSG00000175065|Q86SJ6-2|DSG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3409662058002	1	691.340966	690.33369	1.7926	0.0012393	6.3071	0.0043604	8.0998	0.0055997	691.3449350259199	26.504	0.048248	26.494	26.494	26.542	-0.010645	591	37	1.26753	0.021588564	1.2660105	258.913	0	4.40979						56	3	2	NaN	NaN	NaN	0.84876	1	2969	2969		0.39566	0	1	3801.2			31199	7987	17961	18460	24904	24904					-0.023863758079869513
YALPGGGG	8	Unmodified						0	0	0		nc|ENSG00000175065|Q86SJ6-2|DSG4	nc|ENSG00000175065|Q86SJ6-2|DSG4	nc|ENSG00000175065|Q86SJ6-2|DSG4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	691.340966	690.33369	1.9012	0.0013144	4.6861	0.0032397	6.5873	0.0045541	691.345522172577	26.505	0.048262	26.505	26.481	26.529	0	594	49	1.265731	0.028790832	1.265731	258.54553		5.8809814	0.0054718	-0.00058051	-0.00013975	NaN	0.39566	66	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4462.6			31200	7987	17961	18460							-0.023863758079869513
YALQRRNKKWT	11	Unmodified	_YALQRRNKKWT_					0	0	0			REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.4151342019	2	732.415134	1462.81572	1.5404	0.0011282	5.7884	0.0042395	7.3288	0.0053677	732.4197517708706	22.139	0.072397	22.139	22.091	22.163	0	1011	40	1.0137935	0.02373755	1.0137935	409.88626	0	9.59729						91	4	3	NaN	NaN	NaN	0.73455	1	20445	20445		5.1889	1.6191	1	11217	+		31201	11276	17962	18461	24905	24905					0.10282024148341407
YALQRRNKKWT	11	Unmodified	_YALQRRNKKWT_					0	0	0			REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	732.4151342019	2	732.415134	1462.81572	1.266	0.0009272	5.7369	0.0042018	7.0028	0.005129	732.4190505916936	22.139	0.072351	22.125	22.101	22.173	-0.013731	1008	37	1.0156195	0.021912694	1.0141001	410.6245	0	8.859528						99	4	3	NaN	NaN	NaN	0.75921	1	19458	19458		3.5698	0.68031	1	11970	+		31202	11276	17962	18461	24906	24906					0.10282024148341407
YALQRRNKKWT	11	Unmodified						0	0	0			REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	732.415134	1462.81572	1.5404	0.0011282	5.7884	0.0042395	7.3288	0.0053677	732.4197517708706	22.139	0.072397	22.139	22.091	22.163	0	1011	40	1.0137935	0.02373755	1.0137935	409.88626		9.59729	0.0070652	4.7528E-05	-0.00015326	NaN	5.1889	91	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11217	+		31203	11276	17962	18461							0.10282024148341407
YALQRRNKKWT	11	Unmodified						0	0	0			REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	REV__ENST00000536093.5_3_12:27468169-27475385:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	732.415134	1462.81572	1.266	0.0009272	5.7369	0.0042018	7.0028	0.005129	732.4190505916936	22.139	0.072351	22.125	22.101	22.173	-0.013731	1008	37	1.0156195	0.021912694	1.0141001	410.6245		8.859528	-0.0070652	-2.789E-05	0.00015326	NaN	5.1889	99	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11970	+		31204	11276	17962	18461							0.10282024148341407
YALSGSAS	8	Unmodified	_YALSGSAS_					0	0	0			REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3570102005	1	755.35701	754.349734	1.9171	0.0014481	6.1395	0.0046375	8.0566	0.0060856	755.3620769772924	22.911	0.16856	22.911	22.887	23.055	0	564	64	1.2837118	0.03774953	1.2837118	261.78534	0	7.6982117						173	8	2	NaN	NaN	NaN	0.75682	1	4141	4141		15.013	0	1	19236	+		31205	9627	17963	18462	24907	24907					-0.03726714361766881
YALSGSAS	8	Unmodified						0	0	0			REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	755.35701	754.349734	1.9171	0.0014481	6.1395	0.0046375	8.0566	0.0060856	755.3620769772924	22.911	0.16856	22.911	22.887	23.055	0	564	64	1.2837118	0.03774953	1.2837118	261.78534		7.6982117	-0.0049018	0.0002767	0.00075972	NaN	15.013	173	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19236	+		31206	9627	17963	18462							-0.03726714361766881
YALSGSAS	8	Unmodified						0	0	0			REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	REV__RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	755.35701	754.349734	1.7128	0.0012937	5.1317	0.0038763	6.8444	0.00517	755.3604524391451	22.934	0.16874	22.921	22.896	23.065	-0.01354	564	49	1.2837118	0.028753877	1.2821923	261.78534		5.8637695	0.0049018	-0.00048454	-0.00075972	NaN	15.013	139	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15366	+		31207	9627	17963	18462							-0.03726714361766881
YALSLVLW	8	Unmodified	_YALSLVLW_					0	0	0		ENSG00000184394|ENST00000641086|OR4N5	ENSG00000184394|ENST00000641086|OR4N5	ENSG00000184394|ENST00000641086|OR4N5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5502306998	1	964.550231	963.542954	1.7918	0.0017283	-0.83603	-0.00080639	0.9558	0.00092191	964.5496699933861	32.658	0.04826	32.655	32.631	32.679	-0.0031052	243	34	1.4749115	0.019547462	1.473392	299.6078	0	3.9708252						51	3	2	NaN	NaN	NaN	0.81807	1	7296	7296		6.794	0.70367	1	2919.3			31208	5350	17964	18463	24908	24908					0.059724474252675464
YALYIEWCKNM	11	Unmodified	_YALYIEWCKNM_					0	0	0			REV__ENSG00000155026|ENST00000404406|RSPH10B	REV__ENSG00000155026|ENST00000404406|RSPH10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	717.33324102165	2	717.333241	1432.65193	1.0028	0.00071936	7.0011	0.0050221	8.0039	0.0057415	717.337871889635	28.652	0.28953	28.644	28.499	28.789	-0.0083485	1032	94	1.0010062	0.056678057	0.99948686	404.7961	0	22.919952						485	13	3	NaN	NaN	NaN	0.69656	1	19324	19324		7.6826	0.094995	1	47129	+		31209	10103	17965	18464	24909	24909					-0.04709077729080491
YANELFEIP	9	Unmodified	_YANELFEIP_					0	0	0			REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1095.5357028476	1	1095.5357	1094.52843	1.3296	0.0014566	5.5915	0.0061257	6.9211	0.0075823	1095.5417286330899	31.114	0.16894	31.109	31.06	31.229	-0.0050716	78	76	1.5723488	0.044163108	1.5708294	318.86145	0	8.955963						225	8	2	NaN	NaN	NaN	0.12328	1	12278	12278		32.453	1.8426	1	23594	+		31210	8302	17966	18465	24910	24910					-0.015056695135172049
YANELFEIP	9	Unmodified						0	0	0			REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1095.5357	1094.52843	1.2104	0.001326	6.688	0.007327	7.8984	0.008653	1095.5429298524566	31.115	0.14483	31.115	31.066	31.211	0	78	82	1.5723488	0.047706246	1.5723488	318.86145		9.6744995	0.0030384	0.00073705	0.00075972	NaN	32.453	205	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22236	+		31211	8302	17966	18465							-0.015056695135172049
YANELFEIP	9	Unmodified						0	0	0			REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	REV__CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1095.5357	1094.52843	1.3296	0.0014566	5.5915	0.0061257	6.9211	0.0075823	1095.5417286330899	31.114	0.16894	31.109	31.06	31.229	-0.0050716	78	76	1.5723488	0.044163108	1.5708294	318.86145		8.955963	-0.0030384	-0.00046426	-0.00075972	NaN	32.453	225	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23594	+		31212	8302	17966	18465							-0.015056695135172049
YANIILQII	9	Unmodified	_YANIILQII_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.6401083396001	1	1060.64011	1059.63283	1.3054	0.0013846	-0.38319	-0.00040643	0.92224	0.00097817	1060.640849969884	33.6	0.048153	33.6	33.552	33.6	0	60	43	1.582944	0.024716973	1.582944	321.14175	0	5.0144653						53	3	2	NaN	NaN	NaN	0.66529	1	11091	11091		2.1763	0	1	3237	+		31213	8673	17967	18466	24911	24911					0.10540077033874695
YANLIEITW	9	Unmodified	_YANLIEITW_					0	0	0			REV__nc|ENSG00000204250|B1AMM8|LINC00587	REV__nc|ENSG00000204250|B1AMM8|LINC00587	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7951319289	2	561.795132	1121.57571	1.1179	0.00062803	-4.1876	-0.0023525	-3.0697	-0.0017245	562.2950844953567	28.459	0.14479	28.451	28.403	28.547	-0.0083504	1224	76	0.883646	0.0460099	0.88212657	358.28305	0	18.655151						275	7	4	NaN	NaN	NaN	0.56671	1	13339	13339		6.8632	1.6743	1	34056	+		31214	13217	17968	18467	24912	24912					0.01978609757452432
YANLIEITW	9	Unmodified						0	0	0			REV__nc|ENSG00000204250|B1AMM8|LINC00587	REV__nc|ENSG00000204250|B1AMM8|LINC00587	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.795132	1121.57571	1.8514	0.0010401	-5.9321	-0.0033326	-4.0807	-0.0022925	562.2944069749205	28.46	0.16895	28.46	28.388	28.556	0	1224	67	0.883646	0.040486515	0.883646	358.28305		16.41565	0.0045127	-0.00084977	0.00075972	NaN	6.8632	339	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41944	+		31215	13217	17968	18467							0.01978609757452432
YANLIEITW	9	Unmodified						0	0	0			REV__nc|ENSG00000204250|B1AMM8|LINC00587	REV__nc|ENSG00000204250|B1AMM8|LINC00587	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	561.795132	1121.57571	1.1179	0.00062803	-4.1876	-0.0023525	-3.0697	-0.0017245	562.2950844953567	28.459	0.14479	28.451	28.403	28.547	-0.0083504	1224	76	0.883646	0.0460099	0.88212657	358.28305		18.655151	-0.0045127	0.0011103	-0.00075972	NaN	6.8632	275	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34056	+		31216	13217	17968	18467							0.01978609757452432
YANVDGLTAL	10	Unmodified	_YANVDGLTAL_					0	0	0		nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-4|PPP1R12A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.5309518206998	1	1036.53095	1035.52368	1.4915	0.001546	0.9412	0.00097558	2.4327	0.0025216	1036.5324144767783	26.408	0.12066	26.397	26.349	26.469	-0.011137	174	58	1.5157272	0.03367436	1.5142077	307.59702	0	6.8338013						136	6	3	NaN	NaN	NaN	0.12158	1	9803	9803		42.995	11.434	1	12707			31217	623	17969	18468	24913	24913					0.007334463437018712
YAPAVYLYI	9	Unmodified	_YAPAVYLYI_					0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	536.7893182695	2	536.789318	1071.56408	1.4185	0.00076145	-5.86	-0.0031456	-4.4415	-0.0023841	536.7873259116175	32.828	0.096489	32.828	32.78	32.876	0	1266	40	0.85786515	0.023958802	0.85786515	348.02698	0	9.719818						73	5	2	NaN	NaN	NaN	0.65388	1	11632	11632		3.1533	0.69183	1	6400.7	+		31218	10177	17970	18469	24914	24914					0.03116412734129881
YAPAVYLYI	9	Unmodified						0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	536.789318	1071.56408	1.4185	0.00076145	-5.86	-0.0031456	-4.4415	-0.0023841	536.7873259116175	32.828	0.096489	32.828	32.78	32.876	0	1266	40	0.85786515	0.023958802	0.85786515	348.02698		9.719818	0.014144	-0.0023296	0.00075972	NaN	3.1533	73	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6400.7	+		31219	10177	17970	18469							0.03116412734129881
YAPAVYLYI	9	Unmodified						0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	536.789318	1071.56408	1.0161	0.00054543	-2.7331	-0.0014671	-1.717	-0.00092167	536.787620129499	32.803	0.096485	32.8	32.776	32.872	-0.0031052	1266	34	0.85786515	0.020272791	0.8563457	348.02695		8.224457	-0.014144	0.0010273	-0.00075972	NaN	3.1533	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6784.7	+		31220	10177	17970	18469							0.03116412734129881
YAPNIHLLM	9	Unmodified	_YAPNIHLLM_					0	0	0			REV__nc|ENSG00000168447|P51168-2|SCNN1B	REV__nc|ENSG00000168447|P51168-2|SCNN1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	536.2864198273	2	536.28642	1070.55829	1.1657	0.00062516	6.9589	0.003732	8.1246	0.0043571	536.2902247600916	21.392	0.096117	21.378	21.306	21.402	-0.014006	1248	40	0.8689189	0.023940682	0.86739945	352.5155	0	9.712585						135	5	4	NaN	NaN	NaN	0.47587	1	11294	11294		10.605	1.643	1	12777	+		31221	13167	17971	18470	24915	24915					0.025829909508274795
YAPPIGPG	8	Unmodified	_YAPPIGPG_					0	0	0			REV__ENSG00000161956|ENST00000321337|SENP3	REV__ENSG00000161956|ENST00000321337|SENP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	771.4035664626002	1	771.403566	770.39629	1.5603	0.0012036	-0.38278	-0.00029528	1.1775	0.00090831	771.4032441855012	29.136	0.31376	29.136	28.991	29.305	0	1269	70	0.8560222	0.042406917	0.8560222	174.50235	0	8.64476						318	14	2	NaN	NaN	NaN	0.84945	1	4360	4360		0	0	1	35586	+		31222	10221	17972	18471	24916	24916					0.0019077026020113408
YAPVCTVLE	9	Unmodified	_YAPVCTVLE_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.74933582924996	2	497.749336	993.484119	1.3835	0.00068864	-0.17252	-8.5872E-05	1.211	0.00060277	497.74926679241867	20.525	0.12015	20.525	20.429	20.549	0	1344	49	0.8098828	0.029562771	0.8098828	328.8885	0	12.00528						116	6	2	NaN	NaN	NaN	0.29681	1	8338	8338		19.118	1.3193	1	20793			31223	3951;5191	17973	18472	24917	24917					-0.012883969313634225
YAPVEFFL	8	Unmodified	_YAPVEFFL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.5029461562002	1	985.502946	984.49567	1.6622	0.0016381	-0.47233	-0.00046549	1.1898	0.0011726	985.5020798532777	34.782	0.072433	34.782	34.758	34.831	0	228	49	1.4837929	0.028413057	1.4837929	301.32147	0	5.769989						107	4	3	NaN	NaN	NaN	0.078841	1	8029	8029		69.745	31.137	1	9721.1			31224	2116	17974	18473	24918	24918					0.0028016815430191855
YAPVEFFL	8	Unmodified						0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	985.502946	984.49567	1.6202	0.0015967	0.33911	0.00033419	1.9593	0.0019309	985.5033535372983	34.781	0.096367	34.78	34.732	34.828	-0.0006485	222	55	1.4873441	0.03196132	1.4858247	302.04263		6.49057	-0.0010413	0.00040158	0.0010159	NaN	69.745	122	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11916			31225	2116	17974	18473							0.0028016815430191855
YAQAGSDLV	9	Unmodified	_YAQAGSDLV_					0	0	0			REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.4468878403	1	923.446888	922.439611	1.7633	0.0016283	-7.8631	-0.0072612	-6.0999	-0.0056329	923.4392474059889	29.691	0.048273	29.691	29.691	29.739	0	270	46	1.458913	0.02667272	1.458913	296.54404	0	5.42157						75	3	2	NaN	NaN	NaN	0.46215	1	6442	6442		11.17	0.56537	1	6285.3	+		31226	11087	17975	18474	24919	24919					-0.02471084753199193
YAQAHGLVF	9	Unmodified	_YAQAHGLVF_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.5152421770002	1	1005.51524	1004.50797	1.7056	0.0017151	-8.47	-0.0085168	-6.7644	-0.0068017	1005.5041976492511	29.642	0.048252	29.642	29.618	29.667	0	225	100	1.4855686	0.05857408	1.4855686	301.59912	0	11.891663						139	3	2	NaN	NaN	NaN	0.29681	1	8764	8764		19.118	1.1486	1	34506			31227	4931	17976	18475	24920	24920					0.005892046173471499
YAQHLPYLYSH	11	Unmodified	_YAQHLPYLYSH_					0	0	0			REV__ENST00000237841.5_1_12:3949907-3950609:+|nuORF	REV__ENST00000237841.5_1_12:3949907-3950609:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	464.56293831590006	3	464.562938	1390.66699	0.77194	0.00035861	5.8818	0.0027324	6.6537	0.0030911	464.56617382480925	22.548	0.072363	22.535	22.535	22.607	-0.01354	1401	46	0.77473325	0.027773678	0.7732138	470.0729	0	16.851807						77	4	2	NaN	NaN	NaN	0.77378	1	19051	19051		0.38034	0	1	7258.3	+		31228	10324	17977	18476	24921	24921					-0.012721265451773434
YAQPALFCRQ	10	Unmodified	_YAQPALFCRQ_					0	0	0			REV__ENST00000481145.1_1_1:89726389-89728307:-|nuORF	REV__ENST00000481145.1_1_1:89726389-89728307:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.79768300535	2	598.797683	1195.58081	1.2783	0.00076546	-7.4292	-0.0044486	-6.1509	-0.0036831	598.7935345678007	24.84	0.072378	24.84	24.84	24.912	0	1200	37	0.89836043	0.022059679	0.89836043	363.97528	0	8.937592						57	4	2	NaN	NaN	NaN	0.73444	1	16327	16327		5.6942	0.96509	1	4896.1	+		31229	12383	17978	18477	24922	24922					-0.009154096515658239
YAQTTDGQQI	10	Unmodified	_YAQTTDGQQI_					0	0	0		ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENSG00000118260|ENST00000353267|CREB1	ENSG00000118260|ENST00000353267|CREB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1124.5218436973998	1	1124.52184	1123.51457	2.1814	0.002453	3.6027	0.0040514	5.7841	0.0065044	1124.5279438022135	27.857	0.048262	27.857	27.857	27.905	0	135	79	1.5387528	0.04598558	1.5387528	311.94812	0	9.322571						77	3	2	NaN	NaN	NaN	0.60686	1	13814	13814		14.425	1.4222	1	5639.7			31230	2170	17979	18478	24923	24923					-0.04224947012630764
YAQTTDGQQI	10	Unmodified						0	0	0		ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENSG00000118260|ENST00000353267|CREB1	ENSG00000118260|ENST00000353267|CREB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1124.52184	1123.51457	1.6427	0.0018472	5.0316	0.0056581	6.6742	0.0075053	1124.5259741950795	27.88	0.048311	27.87	27.846	27.895	-0.009552	129	40	1.5422925	0.0230062	1.540773	312.6657		4.6640015	0.0069143	0.00071792	0.0010101	NaN	14.425	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3831.7			31231	2170	17979	18478							-0.04224947012630764
YAQVYQTIP	9	Unmodified	_YAQVYQTIP_					0	0	0			REV__ENSG00000092345|ENST00000399444|DAZL	REV__ENSG00000092345|ENST00000399444|DAZL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7794818647001	2	541.779482	1081.54441	1.1179	0.00060568	4.1224	0.0022334	5.2403	0.0028391	541.782393178682	27.084	0.19305	27.074	27.025	27.218	-0.010124	1248	88	0.8689189	0.053458035	0.86739945	352.47003	0	21.684845						236	9	2	NaN	NaN	NaN	0.36492	1	11737	11737		15.175	1.1338	1	40530	+		31232	8744	17980	18479	24924	24924					0.0069003672338112665
YAREEVAL	8	Unmodified	_YAREEVAL_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4941723839	1	950.494172	949.486896	1.6252	0.0015447	-0.36972	-0.00035142	1.2555	0.0011933	950.4920816774246	28.725	0.096531	28.725	28.701	28.798	0	306	82	1.4375578	0.048041463	1.4375578	292.08084	0	9.760986						118	5	2	NaN	NaN	NaN	0.81756	1	7075	7075		6.8632	0.069206	1	9021.2			31233	1533	17981	18480	24925	24925					0.010131945178045498
YARQLIQEL	9	Unmodified	_YARQLIQEL_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3193055169501	2	567.319306	1132.62406	2.1142	0.0011995	-1.878	-0.0010654	0.23626	0.00013404	567.317968511719	23.417	0.14473	23.417	23.369	23.513	0	1209	46	0.892844	0.02758801	0.892844	361.96957	0	11.184509						219	7	4	NaN	NaN	NaN	0.089764	1	14200	14200		37.302	0	1	37708			31234	4741	17982	18481	24926	24926					0.06305103397380662
YARVNIFF	8	Unmodified	_YARVNIFF_					0	0	0		ENST00000488099.1_1_2:38809156-38812824:-|nuORF	ENST00000488099.1_1_2:38809156-38812824:-|nuORF	ENST00000488099.1_1_2:38809156-38812824:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.2794520749501	2	515.279452	1028.54435	1.9202	0.00098942	-8.393	-0.0043247	-6.4728	-0.0033353	515.7784052166224	29.305	0.28959	29.305	29.256	29.546	0	1293	97	0.84127116	0.05902964	0.84127116	341.47607	0	23.96045						372	13	2	NaN	NaN	NaN	0.72043	1	9720	9720		17.78	1.1962	1	135780			31235	7247	17983	18482	24927	24927					0.03122081514038655
YASASGSG	8	Unmodified	_YASASGSG_					0	0	0		ENSG00000169439|ENST00000302190|SDC2	ENSG00000169439|ENST00000302190|SDC2	ENSG00000169439|ENST00000302190|SDC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	350.15084320515007	2	350.150843	698.287133	1.3584	0.00047564	5.1047	0.0017874	6.4631	0.0022631	350.1524034643732	32.73	0.096554	32.727	32.679	32.776	-0.0031052	1542	49	0.6874725	0.02977842	0.6859531	280.78424	0	12.162384						125	5	3	NaN	NaN	NaN	0.84876	1	3121	3121		0.39566	0	1	12637			31236	4678	17984	18483	24928	24928					-0.07407860429930224
YASASGSG	8	Unmodified						0	0	0		ENSG00000169439|ENST00000302190|SDC2	ENSG00000169439|ENST00000302190|SDC2	ENSG00000169439|ENST00000302190|SDC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	350.150843	698.287133	1.2968	0.00045407	3.2749	0.0011467	4.5717	0.0016008	350.1520701571641	32.732	0.19301	32.732	32.683	32.876	0	1542	64	0.6874725	0.03908205	0.6874725	280.78424		15.96228	0.0020855	-0.00068339	0.00075972	NaN	0.39566	186	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16121			31237	4678	17984	18483							-0.07407860429930224
YASGLCLFPL	10	Unmodified	_YASGLCLFPL_					0	0	0			REV__DUSP5|p.Y187C|1|0.26|ENSG00000138166|chr10:110506966-110506966|A/G|missense_variant	REV__DUSP5|p.Y187C|1|0.26|ENSG00000138166|chr10:110506966-110506966|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.28080313315	2	542.280803	1082.54705	2.0653	0.00112	-1.8042	-0.00097836	0.26113	0.00014161	542.7818924008288	18.602	0.11995	18.588	18.516	18.636	-0.014059	1287	49	0.8449601	0.029502094	0.84344065	342.74738	0	11.967133						79	6	2	NaN	NaN	NaN	0.70746	1	11786	11786		7.5404	0.67717	1	7543.3	+		31238	8335	17985	18484	24929	24929					0.009081688566766388
YASMPDEKND	10	Unmodified	_YASMPDEKND_					0	0	0			REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.2426032194	2	585.242603	1168.47065	1.8362	0.0010746	0.84185	0.00049268	2.678	0.0015673	585.7441961121441	32.514	0.19303	32.514	32.442	32.635	0	1224	91	0.883646	0.05519694	0.883646	358.1084	0	22.369202						596	9	6	NaN	NaN	NaN	0.27719	1	15418	15418		28.896	8.4469	1	152030	+		31239	10139	17986	18485	24930	24930					-0.10684299501258465
YASMPDEKND	10	Unmodified						0	0	0			REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.242603	1168.47065	1.8362	0.0010746	0.84185	0.00049268	2.678	0.0015673	585.7441961121441	32.514	0.19303	32.514	32.442	32.635	0	1224	91	0.883646	0.05519694	0.883646	358.1084		22.369202	0.0021038	8.3213E-05	-0.00016028	NaN	28.896	596	9	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152030	+		31240	10139	17986	18485							-0.10684299501258465
YASMPDEKND	10	Unmodified						0	0	0			REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	REV__nc|ENSG00000157119|Q2TBA0-2|KLHL40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.242603	1168.47065	1.1082	0.00064857	0.69025	0.00040396	1.7985	0.0010525	585.7447027659615	32.513	0.19304	32.51	32.438	32.631	-0.0031052	1221	79	0.885486	0.047827005	0.88396657	358.85406		19.382446	-0.0021038	-9.4231E-05	0.00016028	NaN	28.896	608	9	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112240	+		31241	10139	17986	18485							-0.10684299501258465
YASVEVSKL	9	Unmodified	_YASVEVSKL_					0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.27403234605	2	498.274032	994.533512	1.9983	0.0009957	-1.9477	-0.00097047	0.050641	2.5233E-05	498.27312900249984	18.868	0.071999	18.868	18.868	18.94	0	1311	37	0.83019954	0.022150517	0.83019954	337.13416	0	8.995056						65	4	2	NaN	NaN	NaN	0.25548	1	8374	8374		21.771	3.8014	1	7313.7			31242	1403	17987	18486	24931	24931					0.036026343490902946
YASVEVSKL	9	Unmodified	_YASVEVSKL_					0	0	0		nc|ENSG00000102974|P49711-2|CTCF;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;CTCF|p.C356F|1|0.39|ENSG00000102974|chr16:67616859-67616859|G/T|missense_variant	nc|ENSG00000102974|P49711-2|CTCF	nc|ENSG00000102974|P49711-2|CTCF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.27403234605	2	498.274032	994.533512	1.4441	0.00071958	-0.67013	-0.00033391	0.77402	0.00038567	498.27371259827436	18.914	0.072102	18.9	18.876	18.948	-0.014059	1308	46	0.83204526	0.027689636	0.8305259	337.8837	0	11.244415						89	4	3	NaN	NaN	NaN	0.21451	1	8210	8210		24.4	8.9376	1	9473.4			31243	1403	17987	18486	24932	24932					0.036026343490902946
YATDDDIVF	9	Unmodified	_YATDDDIVF_					0	0	0		nc|ENSG00000141480|P32121-5|ARRB2;nc|ENSG00000141480|P32121-2|ARRB2;ENSG00000141480|ENST00000269260|ARRB2;nc|ENSG00000141480|P32121-3|ARRB2;nc|ENSG00000141480|P32121-4|ARRB2	nc|ENSG00000141480|P32121-5|ARRB2	nc|ENSG00000141480|P32121-5|ARRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.4676828619	1	1058.46768	1057.46041	1.7124	0.0018125	4.1883	0.0044331	5.9006	0.0062456	1058.4728012433031	27.084	0.16898	27.084	27.036	27.205	0	174	85	1.5157272	0.049612284	1.5157272	307.51312	0	10.06543						181	8	2	NaN	NaN	NaN	0.27442	1	10967	10967		20.555	5.3801	1	23438			31244	3324	17988	18487	24933	24933					-0.06602539164191512
YATDDDIVF	9	Unmodified	_YATDDDIVF_					0	0	0		nc|ENSG00000141480|P32121-5|ARRB2;nc|ENSG00000141480|P32121-2|ARRB2;ENSG00000141480|ENST00000269260|ARRB2;nc|ENSG00000141480|P32121-3|ARRB2;nc|ENSG00000141480|P32121-4|ARRB2	nc|ENSG00000141480|P32121-5|ARRB2	nc|ENSG00000141480|P32121-5|ARRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.4676828619	1	1058.46768	1057.46041	1.3442	0.0014228	4.4352	0.0046945	5.7794	0.0061173	1058.4689493784442	27.108	0.14481	27.098	27.049	27.194	-0.010126	171	73	1.5174994	0.042520404	1.51598	307.8727	0	8.626587						156	7	2	NaN	NaN	NaN	0.39244	1	10743	10743		14.042	0.30454	1	19130			31245	3324	17988	18487	24934	24934					-0.06602539164191512
YATEVDVDF	9	Unmodified	_YATEVDVDF_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	nc|ENSG00000006125|P63010-3|AP2B1;ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.4676828619	1	1058.46768	1057.46041	2.3909	0.0025307	-1.0234	-0.0010832	1.3675	0.0014475	1058.4675002850881	25.805	0.12066	25.805	25.757	25.877	0	207	55	1.496219	0.03193772	1.496219	303.5553	0	6.479553						169	6	3	NaN	NaN	NaN	0.021105	1	10966	10966		70.6	39.039	1	18805			31246	340;1213	17989	18488	24935	24935					-0.06602539164191512
YATEVDVDF	9	Unmodified	_YATEVDVDF_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	nc|ENSG00000006125|P63010-3|AP2B1;ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.4676828619	1	1058.46768	1057.46041	2.279	0.0024123	-0.92742	-0.00098165	1.3516	0.0014306	1058.46704719062	25.805	0.096548	25.793	25.769	25.865	-0.0116	204	58	1.4979934	0.03371024	1.496474	303.9153	0	6.8391724						180	5	3	NaN	NaN	NaN	0.023828	1	10742	10742		67.154	37.556	1	16955			31247	340;1213	17989	18488	24936	24936					-0.06602539164191512
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7583524921	2	505.758352	1009.50215	2.3202	0.0011735	-2.1059	-0.0010651	0.21431	0.00010839	505.75722475759477	18.173	0.2158	18.173	18.125	18.34	0	1443	58	0.7487872	0.035241127	0.7487872	304.01205	0	14.308136						267	10	3	NaN	NaN	NaN	0.03528	1	8954	8954		104.71	70.272	1	55237			31248	1845	17990	18489	24937	24937					-0.0022189389434288387
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	505.7583524921	2	505.758352	1009.50215	2.2025	0.0011139	-1.861	-0.00094124	0.34147	0.0001727	505.75798899998716	18.197	0.14386	18.197	18.149	18.292	0	1320	61	0.824661	0.036917448	0.824661	334.81726	0	14.988739						192	7	3	NaN	NaN	NaN	0.7718	1	8955	8955		13.003	4.7126	1	18359			31249	1845	17990	18489	24938	24938					-0.0022189389434288387
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.7583524921	2	505.758352	1009.50215	1.9246	0.00097339	-1.5393	-0.00077853	0.38526	0.00019485	505.7574831842449	18.338	0.21606	18.324	18.228	18.444	-0.01395	1443	55	0.7487872	0.03337723	0.7472678	304.01205	0	13.551392						305	10	4	NaN	NaN	NaN	0.025519	1	8785	8785		89.256	46.938	1	55077			31250	1845	17990	18489	24939	24939					-0.0022189389434288387
YATSSGCS	8	Unmodified	_YATSSGCS_					0	0	0			REV__ENSG00000197683|ENST00000360542|KRTAP26-1	REV__ENSG00000197683|ENST00000360542|KRTAP26-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	775.2926953842001	1	775.292695	774.285419	2.2052	0.0017097	-0.50618	-0.00039244	1.699	0.0013173	775.2920615248479	25.926	0.24132	25.926	25.805	26.046	0	636	94	1.2405256	0.055844903	1.2405256	252.86212	0	11.383133						330	11	2	NaN	NaN	NaN	0.84887	1	4414	4414		0.32989	0	1	33080	+		31251	11155	17991	18490	24940	24940					-0.11075237510203806
YAVATGDAL	9	Unmodified	_YAVATGDAL_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	880.4410741809	1	880.441074	879.433798	1.4891	0.0013111	-1.407	-0.0012388	0.082155	7.2333E-05	880.4397419021143	21.055	0.1445	21.055	21.031	21.175	0	402	76	1.3804773	0.044681907	1.3804773	280.80258	0	9.088745						195	7	3	NaN	NaN	NaN	0.020004	1	5790	5790		71.993	27.69	1	22560			31252	1691	17992	18491	24941	24941					-0.010741832648591298
YAVATGDAL	9	Unmodified	_YAVATGDAL_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	880.4410741809	1	880.441074	879.433798	1.052	0.00092621	-0.091411	-8.0482E-05	0.96058	0.00084573	880.4410170542802	21.055	0.14445	21.041	20.993	21.138	-0.014086	399	73	1.382264	0.042892337	1.3807446	281.16602	0	8.724731						193	7	3	NaN	NaN	NaN	0.013314	1	5670	5670		82.858	32.826	1	23855			31253	1691	17992	18491	24942	24942					-0.010741832648591298
YAVFGTLNL	9	Unmodified	_YAVFGTLNL_					0	0	0			REV__ENSG00000040531|ENST00000046640|CTNS	REV__ENSG00000040531|ENST00000046640|CTNS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5353089171	1	997.535309	996.528032	1.4021	0.0013987	0.31846	0.00031768	1.7206	0.0017163	997.53597684908	34.323	0.14449	34.322	34.274	34.418	-0.0012474	195	82	1.5033154	0.04789877	1.501796	305.23514	0	9.725433						331	7	3	NaN	NaN	NaN	0.062072	1	8279	8279		41.785	0	1	54033	+		31254	8462	17993	18492	24943	24943					0.029629555572796562
YAVGEVEAL	9	Unmodified	_YAVGEVEAL_					0	0	0		ENSG00000259431|ENST00000288014|THTPA	ENSG00000259431|ENST00000288014|THTPA	ENSG00000259431|ENST00000288014|THTPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	950.4829389956	1	950.482939	949.475663	1.3789	0.0013106	-0.60441	-0.00057448	0.77445	0.0007361	950.4818785586525	24.502	0.096405	24.502	24.454	24.55	0	330	58	1.4233059	0.033857226	1.4233059	289.1852	0	6.8790894						117	5	3	NaN	NaN	NaN	0.036546	1	7071	7071		52.624	19.199	1	10744			31255	6139	17994	18493	24944	24944					-0.001096275763416088
YAVLGHFG	8	Unmodified	_YAVLGHFG_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-2|FAM120A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.4410146014002	1	863.441015	862.433738	2.9807	0.0025737	-2.8321	-0.0024453	0.14864	0.00012834	863.4377931459114	23.392	0.04825	23.379	23.355	23.403	-0.013296	879	28	1.0939503	0.01635778	1.0924308	222.58772	0	3.328354						34	3	2	NaN	NaN	NaN	0.84651	1	5421	5421		1.6704	0	1	2100.5	+		31256	8484	17995	18494	24945	24945					-0.0029813847418154182
YAVLLNRFN	9	Unmodified	_YAVLLNRFN_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.3087408306501	2	555.308741	1108.60293	1.4584	0.00080985	-10.984	-0.0060994	-9.5253	-0.0052895	555.3039760352075	24.212	0.072372	24.199	24.151	24.224	-0.012749	1209	49	0.892844	0.029425621	0.8913246	362.0639	0	11.932617						83	4	2	NaN	NaN	NaN	0.62619	1	12862	12862		4.4131	0.44458	1	9865.9			31257	5120	17996	18495	24946	24946					0.05297138088508291
YAVLRFSPIFD	11	Unmodified	_YAVLRFSPIFD_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.3558879885001	2	664.355888	1326.69722	1.336	0.00088756	-10.785	-0.0071653	-9.4494	-0.0062777	664.3488216064533	38.756	0.52861	38.756	38.516	39.044	0	1092	103	0.9644182	0.062287033	0.9644182	390.29803	0	25.207458						1468	23	4	NaN	NaN	NaN	0.11611	1	19210	19210		38.131	5.754	1	826440	+	+	31258	8276	17997	18496	24947	24947					0.04694232119982189
YAVLRFSPIFD	11	Unmodified						0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.355888	1326.69722	1.336	0.00088756	-10.785	-0.0071653	-9.4494	-0.0062777	664.3488216064533	38.756	0.52861	38.756	38.516	39.044	0	1092	103	0.9644182	0.062287033	0.9644182	390.29803		25.207458	0.011096	0.00024351	-0.00015592	NaN	38.131	1468	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	826440	+	+	31259	8276	17997	18496							0.04694232119982189
YAVRDTIAL	9	Unmodified	_YAVRDTIAL_					0	0	0		nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	nc|ENSG00000101974|Q8NB49-2|ATP11C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.2874740723	2	511.287474	1020.5604	1.907	0.00097505	-0.93558	-0.00047835	0.97146	0.00049669	511.2867717335406	21.681	0.12044	21.681	21.657	21.778	0	1239	76	0.87444305	0.04605961	0.87444305	354.97733	0	18.697754						135	6	3	NaN	NaN	NaN	0.29341	1	9396	9396		19.336	4.161	1	16264			31260	1355	17998	18497	24948	24948					0.05093742960275449
YAVYLLDWL	9	Unmodified	_YAVYLLDWL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1155.6084738602	1	1155.60847	1154.6012	1.9466	0.0022495	-1.4949	-0.0017275	0.45174	0.00052204	1155.6066576307385	32.103	0.096535	32.099	32.051	32.148	-0.0037575	66	40	1.579413	0.02295518	1.5778936	320.08643	0	4.65213						75	5	2	NaN	NaN	NaN	0.55027	1	14482	14482		7.5404	0.67717	1	4810.5			31261	5244	17999	18498	24949	24949					0.030080842799179663
YAVYLLDWL	9	Unmodified						0	0	0		ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1155.60847	1154.6012	2.2917	0.0026483	-1.0277	-0.0011876	1.264	0.0014607	1155.6068516368614	32.104	0.096497	32.104	32.056	32.152	0	72	46	1.5758814	0.026489496	1.5758814	319.37067		5.368408	0.0024214	0.00029362	-0.0010062	NaN	7.5404	90	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6846			31262	5244	17999	18498							0.030080842799179663
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2532969039501	2	554.253297	1106.49204	1.4216	0.00078791	-1.8464	-0.0010234	-0.42488	-0.00023549	554.2521751870705	19.516	0.16797	19.516	19.468	19.636	0	1284	70	0.8468043	0.042393148	0.8468043	343.402	0	17.19159						226	8	2	NaN	NaN	NaN	0.1507	1	13113	13113		28.495	0	1	37006			31263	5901	18000	18499	24950	24950					-0.05694546410222756
YAYDGKDYL	9	Unmodified						0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	554.253297	1106.49204	1.4428	0.00079967	-2.0179	-0.0011184	-0.57513	-0.00031877	554.2519666275305	19.515	0.14446	19.5	19.476	19.621	-0.014141	1284	73	0.8468043	0.044238746	0.8452849	343.402		17.940002	-0.0078509	-0.00012003	-0.00075972	NaN	28.495	206	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35604			31264	5901	18000	18499							-0.05694546410222756
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.3138857880501	2	646.313886	1290.61322	1.961	0.0012674	-1.2067	-0.0007799	0.75433	0.00048753	646.3124180833437	23.778	0.16864	23.778	23.754	23.923	0	1113	67	0.9515937	0.040320754	0.9515937	385.21893	0	16.322418						254	8	3	NaN	NaN	NaN	0.29813	1	18600	18600		25.694	0	1	45330			31265	5901	18001	18500	24951	24951					-0.020463437675516616
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.3138857880501	2	646.313886	1290.61322	1.9498	0.0012602	2.2121	0.0014297	4.1619	0.0026899	646.3125658099233	23.802	0.19281	23.789	23.741	23.934	-0.013048	1113	67	0.9515937	0.040333807	0.95007426	385.2189	0	16.327698						313	9	4	NaN	NaN	NaN	0.2084	1	17772	17772		29.547	0	1	51471			31266	5901	18001	18500	24952	24952					-0.020463437675516616
YAYDGQDFL	9	Unmodified	_YAYDGQDFL_					0	0	0		ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;MR1|p.N239Tfs*63|1|0.13|ENSG00000153029|chr1:181052342-181052342|A/-|frameshift_variant;ENSG00000153029|ENST00000367580|MR1	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	ENST00000367578.1_1_1:181003164-181019478:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.4680172129	1	1091.46802	1090.46074	2.2839	0.0024928	3.2877	0.0035884	5.5716	0.0060812	1091.4675865647614	26.553	0.09655	26.553	26.529	26.625	0	168	61	1.5192716	0.035429835	1.5192716	308.11206	0	7.185272						76	5	2	NaN	NaN	NaN	0.46215	1	12403	12403		11.17	2.0471	1	4818.3			31267	3796	18002	18501	24953	24953					-0.08087119444326163
YAYHRNVTICY	11	Unmodified	_YAYHRNVTICY_					0	0	0			REV__ENST00000220562.8_1_8:28573132-28573249:+|nuORF	REV__ENST00000220562.8_1_8:28573132-28573249:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	468.22392822500007	3	468.223928	1401.64996	1.2002	0.00056199	-1.2579	-0.00058897	-0.057639	-2.6988E-05	468.22361719389113	25.588	0.072378	25.576	25.552	25.624	-0.0116	1350	31	0.80618626	0.018484712	0.8046668	489.1195	0	11.214844						67	4	2	NaN	NaN	NaN	0.76488	1	19131	19131		0.9877	0	1	6948.6	+		31268	11467	18003	18502	24954	24954					-0.034803704226305854
YAYIQKLA	8	Unmodified	_YAYIQKLA_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.27383538079994	2	485.273835	968.533118	1.5755	0.00076454	0.82817	0.00040189	2.4036	0.0011664	485.27423460136623	30.148	0.048267	30.142	30.118	30.166	-0.0064106	1329	82	0.81912065	0.049830556	0.8176012	332.75696	0	20.243011						70	3	2	NaN	NaN	NaN	0.8439	1	7425	7425		3.1533	1.2287	1	5896			31269	1537	18004	18503	24955	24955					0.047592594198818006
YAYLYQHV	8	Unmodified	_YAYLYQHV_					0	0	0			REV__nc|ENSG00000243480|P04746-2|AMY2A	REV__nc|ENSG00000243480|P04746-2|AMY2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	352.8431535864	3	352.843154	1055.50763	1.7908	0.00063186	7.8699	0.0027768	9.6607	0.0034087	352.84596213404313	13.997	0.047954	13.986	13.986	14.034	-0.010672	1464	37	0.73579943	0.022275686	0.73428	447.8401	0	13.557953						67	3	2	NaN	NaN	NaN	0.84651	1	10654	10654		0.92586	0.23471	1	10144	+		31270	13245	18005	18504	24956	24956					-0.017902151025282365
YAYMLEVYG	9	Unmodified	_YAYMLEVYG_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5;SLC7A5|p.L213Pfs*11|1|0.38|ENSG00000103257|chr16:87851752-87851753|-/A|frameshift_variant	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7546181724001	2	554.754618	1107.49468	0.94434	0.00052388	2.1153	0.0011735	3.0597	0.0016974	554.7565176135008	35.842	0.14458	35.843	35.77	35.915	0.00053024	1233	52	0.87812483	0.03129351	0.8766054	356.09933	0	12.690186						149	6	3	NaN	NaN	NaN	0.53206	1	12790	12790		8.2903	0	1	21874			31271	1426	18006	18505	24957	24957					-0.05476414276927244
YAYNDKAIL	9	Unmodified	_YAYNDKAIL_					0	0	0		ENST00000469168.1_1_9:2828673-2829902:-|nuORF;ENSG00000080608|ENST00000397885|PUM3	ENST00000469168.1_1_9:2828673-2829902:-|nuORF	ENST00000469168.1_1_9:2828673-2829902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	535.7794818647001	2	535.779482	1069.54441	1.9838	0.0010629	-4.2235	-0.0022629	-2.2397	-0.0012	535.777255078699	19.997	0.09614	19.997	19.972	20.069	0	1269	64	0.8560222	0.038698435	0.8560222	347.2876	0	15.699921						158	5	3	NaN	NaN	NaN	0.27507	1	11544	11544		20.513	1.395	1	23738			31272	907	18007	18506	24958	24958					0.0124203672337444
YAYNDKAIL	9	Unmodified	_YAYNDKAIL_					0	0	0		ENST00000469168.1_1_9:2828673-2829902:-|nuORF;ENSG00000080608|ENST00000397885|PUM3	ENST00000469168.1_1_9:2828673-2829902:-|nuORF	ENST00000469168.1_1_9:2828673-2829902:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	535.7794818647001	2	535.779482	1069.54441	1.1611	0.00062209	-0.6198	-0.00033207	0.5413	0.00029002	535.7792903347474	20.02	0.12035	20.006	19.958	20.078	-0.014141	1275	61	0.85233563	0.03686565	0.8508162	345.79196	0	14.95636						171	6	3	NaN	NaN	NaN	0.29341	1	11258	11258		19.336	1.5561	1	23290			31273	907	18007	18506	24959	24959					0.0124203672337444
YAYTGDTHCSE	11	Unmodified	_YAYTGDTHCSE_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.7376850170002	2	623.737685	1245.46082	0.94883	0.00059182	-6.4859	-0.0040455	-5.5371	-0.0034537	623.7330437128035	26.456	0.19303	26.445	26.397	26.59	-0.011137	1182	73	0.9093879	0.044090807	0.90786844	368.2747	0	17.855469						200	9	3	NaN	NaN	NaN	0.59385	1	16897	16897		14.425	3.8201	1	20467	+		31274	8850	18008	18507	24960	24960					-0.1520948750660409
YAYTGDTHCSE	11	Unmodified						0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.737685	1245.46082	0.94883	0.00059182	-6.4859	-0.0040455	-5.5371	-0.0034537	623.7330437128035	26.456	0.19303	26.445	26.397	26.59	-0.011137	1182	73	0.9093879	0.044090807	0.90786844	368.2747		17.855469	0.0063642	0.0027923	0.00015899	NaN	14.425	200	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20467	+		31275	8850	18008	18507							-0.1520948750660409
YAYVKYSIF	9	Unmodified	_YAYVKYSIF_					0	0	0			REV__tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	REV__tr|U7SSA3|U7SSA3_FUSNUSigma-54factorinteractiondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01556PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.3000501313	2	577.30005	1152.58555	1.5304	0.00088353	-1.9715	-0.0011381	-0.44104	-0.00025461	577.298657046363	23.899	0.16876	23.886	23.813	23.982	-0.01305	1212	67	0.8910048	0.040455878	0.88948536	361.14868	0	16.397858						124	8	2	NaN	NaN	NaN	0.39244	1	14391	14391		14.042	2.8713	1	12982	+		31276	13475	18009	18508	24961	24961					0.015357977628582375
YCDLSALEW	9	Unmodified	_YCDLSALEW_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.2418749379	2	550.241875	1098.4692	1.7995	0.00099014	-0.76993	-0.00042365	1.0295	0.0005665	550.2416976190124	26.094	0.21719	26.094	26.046	26.263	0	1275	55	0.85233563	0.033179045	0.85233563	345.67618	0	13.456238						279	10	4	NaN	NaN	NaN	0.39244	1	12769	12769		14.042	0	1	26214	+		31277	11369	18010	18509	24962	24962					-0.07609888799379405
YCDYFPVI	8	Unmodified	_YCDYFPVI_					0	0	0			REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.23077893535	2	510.230779	1018.447	0.99745	0.00050893	0.93594	0.00047754	1.9334	0.00098648	510.2321248960977	20.525	0.16847	20.511	20.463	20.632	-0.014141	1347	82	0.8080346	0.04987371	0.8065152	328.0281	0	20.246643						281	8	4	NaN	NaN	NaN	0.77489	1	9116	9116		12.588	2.5363	1	30314	+		31278	9701	18011	18510	24963	24963					-0.061480684771254346
YCFSLEWWGE	10	Unmodified	_YCFSLEWWGE_					0	0	0			REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	440.51822974390006	3	440.51823	1318.53286	1.1459	0.00050478	-5.6623	-0.0024943	-4.5164	-0.0019896	440.5161758096119	15.1	0.096178	15.088	15.016	15.112	-0.011738	1392	31	0.780288	0.018512845	0.77876854	473.69785	0	11.23877						68	5	2	NaN	NaN	NaN	0.76892	1	18236	18236		1.3696	0.65351	1	7286.9	+		31279	11890	18012	18511	24964	24964					-0.11366528362259487
YCFSLEWWGE	10	Unmodified						0	0	0			REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	440.51823	1318.53286	1.0399	0.0004581	-7.378	-0.0032502	-6.3381	-0.0027921	440.5154041135987	15.101	0.21622	15.101	15.077	15.294	0	1392	46	0.780288	0.027773678	0.780288	473.69785		16.86087	0.006565	-0.0010319	0.00075972	NaN	1.3696	177	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18338	+		31280	11890	18012	18511							-0.11366528362259487
YCFSLEWWGE	10	Unmodified						0	0	0			REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	REV__ENST00000370751.9_1_1:79110053-79110347:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	440.51823	1318.53286	1.1459	0.00050478	-5.6623	-0.0024943	-4.5164	-0.0019896	440.5161758096119	15.1	0.096178	15.088	15.016	15.112	-0.011738	1392	31	0.780288	0.018512845	0.77876854	473.69785		11.23877	-0.006565	0.0012355	-0.00075972	NaN	1.3696	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7286.9	+		31281	11890	18012	18511							-0.11366528362259487
YCGSCCGF	8	Unmodified	_YCGSCCGF_					0	0	0		ENST00000278612.8_1_11:108068056-108093342:-|nuORF	ENST00000278612.8_1_11:108068056-108093342:-|nuORF	ENST00000278612.8_1_11:108068056-108093342:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	839.2520928979001	1	839.252093	838.244816	1.0385	0.00087159	-1.6704	-0.0014018	-0.63182	-0.00053026	839.2507569512201	11.766	0.096083	11.758	11.71	11.806	-0.0081854	1107	124	0.9552588	0.07503396	0.9537394	194.45596	0	15.274185						183	5	2	NaN	NaN	NaN	0.84876	1	5108	5108		0.39566	0.065779	1	21526			31282	6356	18013	18512	24965	24965					-0.18077618425832043
YCSPCCCG	8	Unmodified	_YCSPCCCG_					0	0	0			REV__ENSG00000186965|ENST00000334055|KRTAP19-2	REV__ENSG00000186965|ENST00000334055|KRTAP19-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.2241635879	1	835.224164	834.216887	2.1477	0.0017938	-8.9312	-0.0074595	-6.7835	-0.0056657	835.2186694055862	59.828	0.04792	59.828	59.828	59.876	0	489	58	1.3285799	0.034067154	1.3285799	270.47165	0	6.9353333						48	3	2	NaN	NaN	NaN	0.84945	1	5183	5183		0	0	1	2209	+		31283	11017	18014	18513	24966	24966					-0.20685264677581472
YCSPCCCG	8	Unmodified	_YCSPCCCG_					0	0	0			REV__ENSG00000186965|ENST00000334055|KRTAP19-2	REV__ENSG00000186965|ENST00000334055|KRTAP19-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.2241635879	1	835.224164	834.216887	1.8227	0.0015223	-8.5068	-0.0071051	-6.6841	-0.0055828	835.2195045674742	58.557	0.095848	58.557	58.485	58.581	0	528	91	1.3052634	0.053821683	1.3052634	265.7249	0	10.95697						170	5	2	NaN	NaN	NaN	0.84945	1	5184	5184		0	0	1	9252	+		31284	11017	18014	18513	24967	24967					-0.20685264677581472
YCSPCCCG	8	Unmodified	_YCSPCCCG_					0	0	0			REV__ENSG00000186965|ENST00000334055|KRTAP19-2	REV__ENSG00000186965|ENST00000334055|KRTAP19-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	835.2241635879	1	835.224164	834.216887	1.8566	0.0015507	-7.1352	-0.0059595	-5.2786	-0.0044088	835.219860462248	59.157	0.047951	59.157	59.133	59.181	0	486	73	1.3303722	0.043038964	1.3303722	270.83652	0	8.761841						106	3	2	NaN	NaN	NaN	0.84945	1	5186	5186		0	0	1	6255.6	+		31285	11017	18014	18513	24968	24968					-0.20685264677581472
YCSRMQLFF	9	Unmodified	_YCSRMQLFF_					0	0	0		ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.775362002	2	597.775362	1193.53617	1.7458	0.0010436	-3.0483	-0.0018222	-1.3025	-0.00077859	597.7733649988638	18.82	0.16797	18.82	18.724	18.892	0	1185	61	0.90755045	0.03675419	0.90755045	367.70584	0	14.891449						202	8	3	NaN	NaN	NaN	0.44082	1	16249	16249		12.049	0.87837	1	22073			31286	7495	18015	18514	24969	24969					-0.0528555678927205
YCTVRTGFYA	10	Unmodified	_YCTVRTGFYA_					0	0	0		ENST00000375946.8_1_10:27443795-27444284:+|nuORF	ENST00000375946.8_1_10:27443795-27444284:+|nuORF	ENST00000375946.8_1_10:27443795-27444284:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.7764162470002	2	590.776416	1179.53828	1.9333	0.0011421	-11.653	-0.0068841	-9.7194	-0.005742	590.7703089514939	19.06	0.14388	19.06	19.012	19.156	0	1200	85	0.89836043	0.051494837	0.89836043	364.03177	0	20.866638						451	7	5	NaN	NaN	NaN	0.5358	1	15806	15806		17.97	1.1114	1	140150			31287	6696	18016	18515	24970	24970					-0.04430804779781283
YDAEFFKKFRN	11	Unmodified	_YDAEFFKKFRN_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	732.86715116655	2	732.867151	1463.71975	1.1501	0.00084284	-6.4237	-0.0047077	-5.2736	-0.0038649	733.3645604898799	24.261	0.096498	24.261	24.237	24.333	0	972	85	1.0375156	0.051096678	1.0375156	419.47498	0	20.658752						313	5	6	NaN	NaN	NaN	0.54514	1	20449	20449		16.858	7.9392	1	22218			31288	3753	18017	18516	24971	24971					0.006438315175955722
YDAFAPYPVPE	11	Unmodified	_YDAFAPYPVPE_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.79532889415	2	634.795329	1267.5761	1.0549	0.00066966	5.329	0.0033828	6.3839	0.0040525	634.8000376157685	31.573	0.24135	31.573	31.452	31.694	0	1143	82	0.9332562	0.049535275	0.9332562	377.86832	0	20.056458						484	11	4	NaN	NaN	NaN	0.59385	1	18178	18178		14.425	0.96197	1	54542			31289	2898	18018	18517	24972	24972					-0.04698015313351789
YDAFIRLWNPF	11	Unmodified	_YDAFIRLWNPF_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	721.3667870258	2	721.366787	1440.71902	0.98346	0.00070943	-2.5232	-0.0018202	-1.5398	-0.0011107	721.3646836543384	28.145	0.14485	28.137	28.088	28.233	-0.0089798	1056	58	0.9863805	0.03474933	0.9848611	398.86026	0	14.051483						211	7	3	NaN	NaN	NaN	0.67772	1	19361	19361		8.9191	1.9347	1	27156			31290	5999	18019	18518	24973	24973					0.016290368685531575
YDEDVECF	8	Unmodified	_YDEDVECF_					0	0	0			REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.3662542578	1	1019.36625	1018.35898	2.7503	0.0028035	-0.49876	-0.00050842	2.2515	0.0022951	1019.3668080424485	22.863	0.14471	22.863	22.838	22.983	0	264	43	1.4624695	0.024893165	1.4624695	296.85483	0	5.052887						127	7	3	NaN	NaN	NaN	0.62311	1	9297	9297		23.85	6.0701	1	8924.1	+		31291	12293	18020	18519	24974	24974					-0.1494673385839178
YDEDVECF	8	Unmodified						0	0	0			REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1019.36625	1018.35898	2.7503	0.0028035	-0.49876	-0.00050842	2.2515	0.0022951	1019.3668080424485	22.863	0.14471	22.863	22.838	22.983	0	264	43	1.4624695	0.024893165	1.4624695	296.85483		5.052887	-0.004913	0.00048323	-0.00012928	NaN	23.85	127	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8924.1	+		31292	12293	18020	18519							-0.1494673385839178
YDEDVECF	8	Unmodified						0	0	0			REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	REV__ENST00000465481.5_1_6:31633906-31635902:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1019.36625	1018.35898	1.9728	0.002011	-1.3779	-0.0014045	0.59493	0.00060645	1019.364265565005	22.886	0.12058	22.872	22.824	22.945	-0.01354	261	43	1.4642475	0.024890542	1.462728	297.21573		5.0523376	0.004913	-0.00041289	0.00012928	NaN	23.85	108	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9230.7	+		31293	12293	18020	18519							-0.1494673385839178
YDEEKCELLD	10	Unmodified	_YDEEKCELLD_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.7711934833501	2	628.771193	1255.52783	1.0571	0.00066469	-10.174	-0.0063973	-9.1171	-0.0057326	629.2643193442833	31.138	0.072365	31.133	31.109	31.181	-0.0050716	1158	58	0.92408	0.034869432	0.9225606	374.1917	0	14.119843						131	4	4	NaN	NaN	NaN	0.77513	1	17133	17133		1.7022	0.19679	1	8957.5			31294	3487	18021	18520	24975	24975					-0.08970877015531187
YDENSDIWLNL	11	Unmodified	_YDENSDIWLNL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	691.3171567585001	2	691.317157	1380.61976	1.2844	0.00088793	1.6381	0.0011324	2.9225	0.0020204	691.8197109905773	31.041	0.096565	31.036	31.012	31.109	-0.0050716	1056	55	0.9863805	0.032932818	0.9848611	399.02533	0	13.322479						112	5	3	NaN	NaN	NaN	0.74794	1	18961	18961		4.3102	0	1	7031.6			31295	4432	18022	18521	24976	24976					-0.055324506068473056
YDENSDIWLNL	11	Unmodified						0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	691.317157	1380.61976	1.0881	0.00075221	0.61269	0.00042357	1.7008	0.0011758	691.3187541432657	31.042	0.048306	31.042	31.042	31.091	0	1059	43	0.98455137	0.02561444	0.98455137	398.2854		10.361938	0.0030557	-0.00076084	-0.00015484	NaN	4.3102	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3794.1			31296	4432	18022	18521							-0.055324506068473056
YDEQTYETYDN	11	Unmodified	_YDEQTYETYDN_					0	0	0		KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.7755186988	2	720.775519	1439.53648	1.3289	0.00095783	-0.43004	-0.00030996	0.89885	0.00064787	721.2770664864257	29.642	0.2413	29.642	29.594	29.836	0	1083	43	0.9699114	0.02563101	0.9699114	392.20377	0	10.36441						287	11	4	NaN	NaN	NaN	0.20314	1	20321	20321		30.035	19.675	1	36050			31297	7832	18023	18522	24977	24977					-0.16570231845366834
YDEQTYETYDN	11	Unmodified	_YDEQTYETYDN_					0	0	0		KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	KHDRBS2|p.D282E|1|0.27|ENSG00000112232|chr6:61732729-61732729|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.7755186988	2	720.775519	1439.53648	0.972	0.00070059	-1.3745	-0.00099073	-0.40253	-0.00029013	720.7742389247557	29.642	0.21715	29.635	29.61	29.828	-0.0070648	1083	43	0.9699114	0.02563101	0.96839195	392.20377	0	10.364441						169	10	2	NaN	NaN	NaN	0.65755	1	19356	19356		10.244	5.5146	1	32826			31298	7832	18023	18522	24978	24978					-0.16570231845366834
YDFGFVNRLC	10	Unmodified	_YDFGFVNRLC_					0	0	0			REV__ENST00000394054.6_1_3:101579486-101579642:+|nuORF	REV__ENST00000394054.6_1_3:101579486-101579642:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.2896907977502	2	617.289691	1232.56483	0.69491	0.00042896	1.3401	0.00082721	2.035	0.0012562	617.7925648995625	31.669	0.07239	31.664	31.664	31.737	-0.0044155	1158	46	0.92408	0.027540386	0.9225606	374.2675	0	11.154327						55	4	2	NaN	NaN	NaN	0.76991	1	16609	16609		6.2502	3.3607	1	3687.6	+		31299	11995	18024	18523	24979	24979					-0.04215115888450782
YDFLPIKASD	10	Unmodified	_YDFLPIKASD_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7978715831001	2	584.797872	1167.58119	1.7661	0.0010328	4.2205	0.0024681	5.9866	0.003501	584.800082237825	29.087	0.16896	29.087	28.991	29.16	0	1146	88	0.93142134	0.053261995	0.93142134	377.47327	0	21.585297						269	8	3	NaN	NaN	NaN	0.65442	1	15397	15397		11.17	0.56537	1	34575			31300	2030	18025	18524	24980	24980					0.004102885493011854
YDFQARMFM	9	Unmodified	_YDFQARMFM_					0	0	0			REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.7649942809501	2	604.764994	1207.51544	1.346	0.00081401	5.5864	0.0033784	6.9323	0.0041924	604.7694003624714	24.985	0.072403	24.985	24.96	25.033	0	1185	58	0.90755045	0.034907043	0.90755045	367.65717	0	14.141174						113	4	3	NaN	NaN	NaN	0.46215	1	16664	16664		11.17	2.2512	1	20751	+		31301	9500	18026	18525	24981	24981					-0.08002147168917872
YDFQARMFM	9	Unmodified						0	0	0			REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	604.764994	1207.51544	1.346	0.00081401	5.5864	0.0033784	6.9323	0.0041924	604.7694003624714	24.985	0.072403	24.985	24.96	25.033	0	1185	58	0.90755045	0.034907043	0.90755045	367.65717		14.141174	-0.0059627	5.3745E-07	0.0016785	NaN	11.17	113	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20751	+		31302	9500	18026	18525							-0.08002147168917872
YDFQARMFM	9	Unmodified						0	0	0			REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	REV__ENST00000462825.5_1_X:154011696-154028031:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.764994	1207.51544	1.0467	0.00063298	5.5856	0.003378	6.6323	0.004011	604.7684800409817	25.008	0.048279	24.996	24.948	24.996	-0.012011	1188	55	0.90571284	0.033071637	0.9041934	366.91272		13.397644	0.0059627	-3.7868E-07	-0.0016785	NaN	11.17	69	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17701	+		31303	9500	18026	18525							-0.08002147168917872
YDGSTERVE	9	Unmodified	_YDGSTERVE_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2356354670501	2	528.235635	1054.45672	1.248	0.00065925	5.779	0.0030527	7.027	0.0037119	528.7406033487459	34.806	0.072418	34.806	34.782	34.855	0	1305	49	0.83389086	0.029518008	0.83389086	338.37045	0	11.9776						68	4	2	NaN	NaN	NaN	0.41766	1	10820	10820		13.003	1.4544	1	6740.3			31304	4079	18027	18526	24982	24982					-0.06833208938041935
YDIEKEVL	8	Unmodified	_YDIEKEVL_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5248038103001	1	1008.5248	1007.51753	0.98779	0.00099622	-5.7346	-0.0057835	-4.7469	-0.0047873	1008.5191664647483	31.163	0.12064	31.163	31.139	31.259	0	159	103	1.5245869	0.06028819	1.5245869	309.50806	0	12.239197						334	6	3	NaN	NaN	NaN	0.43738	1	8881	8881		34.439	0	1	49163	+		31305	10333	18028	18527	24983	24983					0.014069281122033317
YDIKREKS	8	Unmodified	_YDIKREKS_					0	0	0			REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	REV__tr|U7T1Q6|U7T1Q6_FUSNUCelldivisionproteinFtsQOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00535PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.5578352732	1	1038.55784	1037.55056	1.9999	0.002077	-3.6739	-0.0038156	-1.6741	-0.0017386	1038.5533786052024	26.046	0.096535	26.035	26.035	26.131	-0.011135	99	61	1.5599792	0.035362363	1.5584598	316.5693	0	7.176117						101	5	2	NaN	NaN	NaN	0.75561	1	9897	9897		15.175	2.1725	1	15166	+		31306	13575	18029	18528	24984	24984					0.0332855495489639
YDLDHNVEFN	10	Unmodified	_YDLDHNVEFN_					0	0	0		ENST00000491730.5_1_3:113251655-113300327:+|nuORF;ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1	ENST00000491730.5_1_3:113251655-113300327:+|nuORF	ENST00000491730.5_1_3:113251655-113300327:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.2752919438001	2	633.275292	1264.53603	2.0806	0.0013176	-6.2663	-0.0039683	-4.1856	-0.0026507	633.2728477983044	34.781	0.048222	34.78	34.756	34.804	-0.0006485	1149	28	0.92958635	0.016517103	0.9280669	376.3922	0	6.6878357						39	3	2	NaN	NaN	NaN	0.77024	1	17295	17295		2.8895	0.71314	1	3112.4			31307	802	18030	18529	24985	24985					-0.08565561983891712
YDLGHLERYP	10	Unmodified	_YDLGHLERYP_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	631.8118446256001	2	631.811845	1261.60914	0.93856	0.000593	3.3023	0.0020864	4.2409	0.0026794	631.8144736709413	33.334	0.096508	33.331	33.283	33.379	-0.0024757	1128	46	0.9424274	0.027507722	0.94090796	381.60114	0	11.138245						110	5	3	NaN	NaN	NaN	0.74854	1	17251	17251		4.7291	1.4681	1	7247.8			31308	2839	18031	18530	24986	24986					-0.011203884706219469
YDLSPMENYGK	11	Unmodified	_YDLSPMENYGK_					0	0	0			REV__tr|U7T344|U7T344_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00383PE=4SV=1	REV__tr|U7T344|U7T344_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00383PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.53242744263326	3	439.532427	1315.57545	1.4824	0.00065158	0.24047	0.0001057	1.7229	0.00075727	439.53264876415693	24.333	0.26548	24.32	24.272	24.537	-0.012749	1383	55	0.7858409	0.033315837	0.7843215	477.08	0	20.22586						511	12	6	NaN	NaN	NaN	0.4078	1	18195	18195		15.786	2.1482	1	282020	+		31309	13588	18032	18531	24987	24987					-0.06971178024718938
YDLTSLTTD	9	Unmodified	_YDLTSLTTD_					0	0	0		tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	514.7427620074	2	514.742762	1027.47097	1.7209	0.00088582	-10.189	-0.0052449	-8.4685	-0.0043591	514.7373743553661	18.554	0.23991	18.54	18.468	18.708	-0.01395	1284	70	0.8468043	0.042429864	0.8452849	343.72675	0	17.222717						324	11	3	NaN	NaN	NaN	0.17818	1	9459	9459		26.732	0.61661	1	40404			31310	13874	18033	18532	24988	24988					-0.04166556509767361
YDMWWEPR	8	Unmodified	_YDMWWEPR_					0	0	0			REV__ENSG00000181195|ENST00000451791|PENK	REV__ENSG00000181195|ENST00000451791|PENK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1182.5036912126998	1	1182.50369	1181.49641	2.038	0.00241	-2.3562	-0.0027863	-0.31821	-0.00037628	1182.5000390246612	37.506	0.072392	37.506	37.482	37.554	0	156	46	1.5263584	0.026568055	1.5263584	309.25098	0	5.3828735						63	4	2	NaN	NaN	NaN	0.84727	1	15862	15862		1.2418	0.44196	1	4599.2	+		31311	10838	18034	18533	24989	24989					-0.08707360468338265
YDNICVDIH	9	Unmodified	_YDNICVDIH_					0	0	0			REV__ENST00000504941.1_1_5:106762801-107006392:-|nuORF	REV__ENST00000504941.1_1_5:106762801-107006392:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.49905811760004	3	364.499058	1090.47534	1.7413	0.00063469	5.5581	0.0020259	7.2994	0.0026606	364.50114714817045	19.466	0.096214	19.452	19.404	19.5	-0.014141	1503	37	0.711653	0.022304714	0.71013355	432.96497	0	13.570038						137	5	3	NaN	NaN	NaN	0.55027	1	12099	12099		4.3102	0	1	18190	+		31312	10920	18035	18534	24990	24990					-0.06627370567821345
YDNILNFI	8	Unmodified	_YDNILNFI_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5145734750002	1	1011.51457	1010.5073	1.2265	0.0012406	-2.4765	-0.002505	-1.2499	-0.0012643	1011.5108780686365	32.465	0.1689	32.462	32.438	32.607	-0.0031052	180	58	1.5121819	0.03369224	1.5106624	306.97742	0	6.83963						123	8	2	NaN	NaN	NaN	0.78967	1	8821	8821		10.605	2.3147	1	12255	+		31313	9960	18036	18535	24991	24991					0.002463651776338338
YDNILNFI	8	Unmodified						0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1011.51457	1010.5073	1.4274	0.0014438	-4.924	-0.0049806	-3.4966	-0.0035368	1011.510563692265	32.466	0.12064	32.466	32.394	32.514	0	183	58	1.510409	0.033688784	1.510409	306.61752		6.8388977	0.0020967	-0.0013166	-0.00012673	NaN	10.605	124	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10367	+		31314	9960	18036	18535							0.002463651776338338
YDNILNFI	8	Unmodified						0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1011.51457	1010.5073	1.2265	0.0012406	-2.4765	-0.002505	-1.2499	-0.0012643	1011.5108780686365	32.465	0.1689	32.462	32.438	32.607	-0.0031052	180	58	1.5121819	0.03369224	1.5106624	306.97742		6.83963	-0.0020967	0.0011591	0.00012673	NaN	10.605	123	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12255	+		31315	9960	18036	18535							0.002463651776338338
YDQDEEEEEE	10	Unmodified	_YDQDEEEEEE_					0	0	0			REV__nc|ENSG00000183718|Q96A61-2|TRIM52	REV__nc|ENSG00000183718|Q96A61-2|TRIM52	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.7282341552001	2	657.728234	1313.44192	0.8601	0.00056571	6.2758	0.0041278	7.1359	0.0046935	658.2336216297688	35.603	0.24117	35.603	35.53	35.771	0	1140	64	0.93509084	0.0385316	0.93509084	378.46863	0	15.595276						461	11	5	NaN	NaN	NaN	0.71559	1	19001	19001		6.9844	0	1	56069	+		31316	10902	18037	18536	24992	24992					-0.20226790387346227
YDQDGEPIQTF	11	Unmodified	_YDQDGEPIQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.78823214355	2	656.788232	1311.56191	0.37294	0.00024495	-9.7674	-0.0064151	-9.3944	-0.0061701	656.7825976408095	35.144	0.19308	35.144	35.096	35.289	0	1140	61	0.93509084	0.03667897	0.93509084	378.47433	0	14.845673						192	9	2	NaN	NaN	NaN	0.61402	1	18973	18973		13.101	2.1361	1	22017			31317	1210	18038	18537	24993	24993					-0.08140712532281213
YDRAPVPD	8	Unmodified	_YDRAPVPD_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	466.72724932895	2	466.727249	931.439946	1.4818	0.00069157	3.2812	0.0015314	4.7629	0.002223	466.72953554370434	15.844	0.071838	15.831	15.807	15.879	-0.012611	1371	31	0.79324204	0.018498778	0.7917226	322.42365	0	7.5190735						65	4	2	NaN	NaN	NaN	0.80692	1	6490	6490		8.2903	0.045466	1	5547.4	+		31318	9704	18039	18538	24994	24994					-0.028516650333358484
YDRQSMRIE	9	Unmodified	_YDRQSMRIE_					0	0	0		ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENST00000394628.2_1_10:79492006-79493143:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.2876794250502	2	599.287679	1196.56081	1.9367	0.0011607	-1.8961	-0.0011363	0.04068	2.4379E-05	599.2866667149099	25.394	0.072351	25.382	25.358	25.431	-0.012011	1017	40	1.010141	0.023740053	1.0086216	409.25992	0	9.618317						57	4	2	NaN	NaN	NaN	0.6907	1	15710	15710		0	0	1	4276.6			31319	6778	18040	18539	24995	24995					-0.029612053821438167
YDSPSPHV	8	Unmodified	_YDSPSPHV_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	901.4050230256001	1	901.405023	900.397747	1.9218	0.0017323	4.4902	0.0040475	6.412	0.0057798	901.4091778026548	24.261	0.072357	24.261	24.237	24.309	0	342	265	1.4161754	0.15720606	1.4161754	287.96057	0	31.96576						775	4	4	NaN	NaN	NaN	0.35353	1	6087	6087		38.918	2.3314	1	346730	+		31320	9384	18041	18540	24996	24996					-0.056436404417013364
YDSPSPHV	8	Unmodified	_YDSPSPHV_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	901.4050230256001	1	901.405023	900.397747	2.1106	0.0019025	4.7731	0.0043025	6.8837	0.006205	901.4094338017486	24.26	0.072412	24.248	24.224	24.296	-0.012749	342	286	1.4161754	0.16977441	1.4146559	287.96057	0	34.521393						672	4	4	NaN	NaN	NaN	0.57691	1	5968	5968		26.732	0.61661	1	287800	+		31321	9384	18041	18540	24997	24997					-0.056436404417013364
YDSPSPHV	8	Unmodified						0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	901.405023	900.397747	1.9218	0.0017323	4.4902	0.0040475	6.412	0.0057798	901.4091778026548	24.261	0.072357	24.261	24.237	24.309	0	342	265	1.4161754	0.15720606	1.4161754	287.96057		31.96576	0.0065195	-9.8403E-05	0.00075972	NaN	38.918	775	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346730	+		31322	9384	18041	18540							-0.056436404417013364
YDSPSPHV	8	Unmodified						0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	901.405023	900.397747	2.1106	0.0019025	4.7731	0.0043025	6.8837	0.006205	901.4094338017486	24.26	0.072412	24.248	24.224	24.296	-0.012749	342	286	1.4161754	0.16977441	1.4146559	287.96057		34.521393	-0.0065195	0.00015664	-0.00075972	NaN	38.918	672	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287800	+		31323	9384	18041	18540							-0.056436404417013364
YDSPSVNAR	9	Unmodified	_YDSPSVNAR_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	504.74088802045003	2	504.740888	1007.46722	2.0317	0.0010255	-4.1738	-0.0021067	-2.1422	-0.0010812	505.2384141663822	13.541	0.048014	13.531	13.507	13.555	-0.010098	1329	43	0.81912065	0.025853395	0.8176012	332.5769	0	10.496948						48	3	2	NaN	NaN	NaN	0.5168	1	8700	8700		8.9191	1.3315	1	2671.6			31324	786	18042	18541	24998	24998					-0.03621181492940195
YDVEEETT	8	Unmodified	_YDVEEETT_					0	0	0			REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	985.3996628762001	1	985.399663	984.392386	2.6587	0.0026199	-11.356	-0.01119	-8.6969	-0.0085699	985.3857136506599	32.344	0.024147	32.341	32.341	32.365	-0.0037613	315	34	1.4322147	0.019593239	1.4306953	290.8477	0	3.9789124						32	2	2	NaN	NaN	NaN	0.82797	1	7846	7846		5.4659	0	1	1686.4	+		31325	11354	18043	18542	24999	24999					-0.10043408814840404
YDVFVCGK	8	Unmodified	_YDVFVCGK_					0	0	0			REV__ENST00000579991.2_1_17:56167288-56167468:+|nuORF	REV__ENST00000579991.2_1_17:56167288-56167468:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	930.4389656909002	1	930.438966	929.431689	1.0053	0.0009354	-0.67982	-0.00063253	0.32552	0.00030287	930.4386808909112	32.272	0.38617	32.268	32.148	32.534	-0.0037613	1272	100	0.854179	0.060792148	0.8526596	173.60435	0	12.355469						957	17	4	NaN	NaN	NaN	0.84887	1	6446	6446		0.32989	0	1	175910	+		31326	12865	18044	18543	25000	25000					-0.03584935274295731
YDWDCQLAL	9	Unmodified	_YDWDCQLAL_					0	0	0		nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	nc|ENSG00000275395|Q9Y6R7|FCGBP	nc|ENSG00000275395|Q9Y6R7|FCGBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.74732445655	2	563.747324	1125.4801	1.7014	0.00095915	3.7762	0.0021288	5.4775	0.0030879	564.2524263034762	25.226	0.14475	25.214	25.165	25.31	-0.012011	1209	82	0.892844	0.0496853	0.8913246	361.99716	0	20.144562						331	7	5	NaN	NaN	NaN	0.33629	1	13460	13460		16.584	5.9792	1	56735			31327	6188	18045	18544	25001	25001					-0.07762486425076531
YDWILAVI	8	Unmodified	_YDWILAVI_					0	0	0			REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.77621089425	2	496.776211	991.537869	1.3193	0.0006554	-8.462	-0.0042037	-7.1427	-0.0035483	496.77243237168636	22.187	0.04825	22.173	22.149	22.197	-0.013731	1287	49	0.8449601	0.029505253	0.84344065	343.14243	0	11.982239						63	3	2	NaN	NaN	NaN	0.78264	1	8114	8114		11.548	3.2582	1	4206.8	+		31328	9264	18046	18545	25002	25002					0.04176143562665402
YDWILAVI	8	Unmodified						0	0	0			REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	496.776211	991.537869	2.1705	0.0010783	-6.0804	-0.0030206	-3.9099	-0.0019423	496.7744762313149	22.067	0.048246	22.067	22.043	22.091	0	1302	43	0.8357362	0.025828242	0.8357362	339.39655		10.488983	-0.053254	0.0015881	-0.0038522	NaN	11.548	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1870.9	+		31329	9264	18046	18545							0.04176143562665402
YDWILAVI	8	Unmodified						0	0	0			REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	496.776211	991.537869	1.3193	0.0006554	-8.462	-0.0042037	-7.1427	-0.0035483	496.77243237168636	22.187	0.04825	22.173	22.149	22.197	-0.013731	1287	49	0.8449601	0.029505253	0.84344065	343.14243		11.982239	0.053254	-0.00077809	0.0038522	NaN	11.548	63	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4206.8	+		31330	9264	18046	18545							0.04176143562665402
YDYSEEKYK	9	Unmodified	_YDYSEEKYK_					0	0	0		tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1	tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1	tr|U7SKP6|U7SKP6_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02099PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	408.85215445689994	3	408.852154	1223.53463	1.0822	0.00044244	-3.6034	-0.0014733	-2.5212	-0.0010308	408.8507663825799	30.028	0.41024	30.021	29.876	30.287	-0.0064106	1482	67	0.72465914	0.04084319	0.7231397	440.28012	0	24.815063						684	18	4	NaN	NaN	NaN	0.58159	1	16364	16364		3.5794	1.0189	1	131520			31331	13758	18047	18546	25003	25003					-0.06819196072660816
YEAWVRIF	8	Unmodified	_YEAWVRIF_					0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.2847344181	2	542.284734	1082.55492	2.0925	0.0011347	-2.1161	-0.0011475	-0.023543	-1.2767E-05	542.2834777851747	25.829	0.16895	25.817	25.721	25.89	-0.011602	1500	37	0.71351165	0.02230227	0.7119922	289.42694	0	9.046661						130	8	2	NaN	NaN	NaN	0.84756	1	11788	11788		1.072	0	1	14429	+		31332	9978	18048	18547	25004	25004					0.016940641684641378
YECFGGEYR	9	Unmodified	_YECFGGEYR_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2292988789001	2	562.229299	1122.44404	1.9831	0.001115	-9.9079	-0.0055705	-7.9248	-0.0044556	562.7238380440374	17.141	0.12004	17.141	17.117	17.237	0	1248	40	0.8689189	0.023950994	0.8689189	352.3085	0	9.71109						84	6	3	NaN	NaN	NaN	0.64666	1	13771	13771		3.5698	0	1	5325			31333	4128	18049	18548	25005	25005					-0.11227943601920742
YEDTEDEQYF	10	Unmodified	_YEDTEDEQYF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	446.83846213899994	3	446.838462	1337.49356	1.3211	0.00059031	4.0663	0.001817	5.3873	0.0024073	447.1736417332666	23.489	0.07239	23.489	23.465	23.538	0	1506	58	0.70979416	0.035325408	0.70979416	430.8391	0	21.44223						110	4	3	NaN	NaN	NaN	0.76512	1	19361	19361		3.5945	2.3398	1	8469.6	+		31334	10981	18050	18549	25006	25006					-0.16169001902790114
YEEAGVKG	8	Unmodified	_YEEAGVKG_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10;nc|ENSG00000173598|Q9NZJ9-3|NUDT4;ENSG00000173598|ENST00000415493|NUDT4;ENSG00000177144|ENST00000322209|NUDT4B	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	852.4097740525002	1	852.409774	851.402498	0.5006	0.00042672	5.8327	0.0049718	6.3333	0.0053985	852.4145998832108	31.572	0.14482	31.568	31.519	31.664	-0.0044155	378	55	1.3947657	0.032141924	1.3932463	283.85275	0	6.5412903						132	7	2	NaN	NaN	NaN	0.75561	1	5272	5272		15.175	0	1	11164			31335	2343	18051	18550	25007	25007					-0.029147562989351172
YEEKYGHMF	9	Unmodified	_YEEKYGHMF_					0	0	0		VPS53|p.R304H|1|0.27|ENSG00000141252|chr17:627237-627237|C/T|missense_variant	VPS53|p.R304H|1|0.27|ENSG00000141252|chr17:627237-627237|C/T|missense_variant	VPS53|p.R304H|1|0.27|ENSG00000141252|chr17:627237-627237|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.2605990073	2	602.260599	1202.50665	0.74312	0.00044755	4.7941	0.0028873	5.5373	0.0033349	602.2641584962779	28.507	0.16888	28.499	28.427	28.596	-0.0083485	1215	49	0.8891654	0.02942884	0.88764596	360.22617	0	11.922455						163	8	3	NaN	NaN	NaN	0.51184	1	15883	15883		9.1232	0.87838	1	18235			31336	14024	18052	18551	25008	25008					-0.08650797533755394
YEEMEEEEEEE	11	Unmodified	_YEEMEEEEEEE_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.7561343149001	2	737.756134	1473.49772	1.2892	0.00095114	5.056	0.0037301	6.3452	0.0046812	737.7595001660271	24.092	0.096546	24.092	24.068	24.164	0	1059	67	0.98455137	0.040255606	0.98455137	398.03638	0	16.274628						209	5	4	NaN	NaN	NaN	0.76488	1	20486	20486		2.8895	0	1	14127			31337	1763	18053	18552	25009	25009					-0.22009325262024504
YEFNKKDLS	9	Unmodified	_YEFNKKDLS_					0	0	0		tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	tr|U7SMX9|U7SMX9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01741PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.28767103755	2	572.287671	1142.56079	1.7357	0.00099331	8.0936	0.0046319	9.8293	0.0056252	572.7942511233789	28.388	0.12064	28.388	28.339	28.46	0	1203	64	0.8965218	0.03861493	0.8965218	363.42255	0	15.65329						231	6	5	NaN	NaN	NaN	0.51576	1	14549	14549		8.962	0.71716	1	23300			31338	13779	18054	18553	25010	25010					-0.004788821105421448
YEGALIQQF	9	Unmodified	_YEGALIQQF_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.7716568326	2	534.771657	1067.52876	2.0339	0.0010877	2.3906	0.0012784	4.4244	0.0023661	534.7716303796925	22.549	0.14476	22.549	22.549	22.694	0	1275	76	0.85233563	0.046084464	0.85233563	345.80026	0	18.6969						181	7	3	NaN	NaN	NaN	0.51576	1	11441	11441		8.962	2.0988	1	23500	+		31339	9087	18055	18554	25011	25011					-0.0023024979368528875
YEGALIQQF	9	Unmodified						0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.771657	1067.52876	2.0339	0.0010877	2.3906	0.0012784	4.4244	0.0023661	534.7716303796925	22.549	0.14476	22.549	22.549	22.694	0	1275	76	0.85233563	0.046084464	0.85233563	345.80026		18.6969	0	0	0	NaN	8.962	181	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23500	+		31340	9087	18055	18554							-0.0023024979368528875
YEHDGPLV	8	Unmodified	_YEHDGPLV_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	929.4363231540001	1	929.436323	928.429047	1.6141	0.0015002	5.1318	0.0047697	6.7459	0.0062699	929.4405987941442	23.489	0.072409	23.476	23.451	23.524	-0.013294	393	106	1.3858368	0.0624882	1.3843174	281.66354	0	12.700378						227	4	3	NaN	NaN	NaN	0.78605	1	6423	6423		11.091	1.3447	1	19713	+		31341	10517	18056	18555	25012	25012					-0.0380306740761398
YEHDGPLV	8	Unmodified						0	0	0			REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	929.436323	928.429047	1.6141	0.0015002	5.1318	0.0047697	6.7459	0.0062699	929.4405987941442	23.489	0.072409	23.476	23.451	23.524	-0.013294	393	106	1.3858368	0.0624882	1.3843174	281.66354		12.700378	0.0052058	0.00040328	0.00013344	NaN	11.091	227	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19713	+		31342	10517	18056	18555							-0.0380306740761398
YEHMEPFSQ	9	Unmodified	_YEHMEPFSQ_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2424062541501	2	584.242406	1166.47026	1.7362	0.0010144	-11.346	-0.0066287	-9.6097	-0.0056144	584.7374848448741	36.543	0.16874	36.543	36.495	36.663	0	1227	70	0.88180584	0.042315364	0.88180584	357.3698	0	17.14917						323	8	5	NaN	NaN	NaN	0.47587	1	15340	15340		10.605	0.85897	1	23982	+		31343	11190	18057	18556	25013	25013					-0.10631674430442217
YEIWFFFLT	9	Unmodified	_YEIWFFFLT_					0	0	0			REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF	REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.3157001955001	2	633.3157	1264.61685	1.3225	0.00083753	-4.0941	-0.0025928	-2.7716	-0.0017553	633.3131910530997	32.659	0.12066	32.659	32.635	32.756	0	1122	61	0.9460945	0.036682904	0.9460945	383.07614	0	14.852997						134	6	2	NaN	NaN	NaN	0.16171	1	18093	18093		27.789	11.205	1	12972	+		31344	12725	18058	18557	25014	25014					-0.004876292030530749
YEIWFFFLT	9	Unmodified						0	0	0			REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF	REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	633.3157	1264.61685	1.3225	0.00083753	-4.0941	-0.0025928	-2.7716	-0.0017553	633.3131910530997	32.659	0.12066	32.659	32.635	32.756	0	1122	61	0.9460945	0.036682904	0.9460945	383.07614		14.852997	0	0	0	NaN	27.789	134	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12972	+		31345	12725	18058	18557							-0.004876292030530749
YEIYKAFID	9	Unmodified	_YEIYKAFID_					0	0	0			REV__tr|U7T2G2|U7T2G2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00439PE=4SV=1	REV__tr|U7T2G2|U7T2G2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00439PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.2949647534	2	581.294965	1160.57538	1.3876	0.00080658	-1.022	-0.0005941	0.36552	0.00021247	581.2942554133393	35.699	0.096451	35.699	35.651	35.747	0	1179	28	0.9112251	0.016536713	0.9112251	369.31445	0	6.70224						67	5	3	NaN	NaN	NaN	0.55027	1	15168	15168		7.5404	0.67717	1	3709.1	+		31346	13581	18059	18558	25015	25015					0.0015119003760446503
YELDKLTQ	8	Unmodified	_YELDKLTQ_					0	0	0			REV__nc|ENSG00000128849|Q0VF96-2|CGNL1	REV__nc|ENSG00000128849|Q0VF96-2|CGNL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1009.5200527834	1	1009.52005	1008.51278	1.3928	0.001406	7.6673	0.0077403	9.0601	0.0091463	1009.5279829745157	31.041	0.096537	31.036	30.964	31.06	-0.0050716	183	79	1.510409	0.046112657	1.5088896	306.62564	0	9.361237						204	5	3	NaN	NaN	NaN	0.6053	1	8752	8752		24.961	5.8427	1	30021	+		31347	9455	18060	18559	25016	25016					0.008860439694331035
YELFRAKLI	9	Unmodified	_YELFRAKLI_					0	0	0			REV__ENST00000447998.6_1_5:150089722-150089842:-|nuORF	REV__ENST00000447998.6_1_5:150089722-150089842:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8424164725001	2	576.842416	1151.67028	1.835	0.0010585	-2.3778	-0.0013716	-0.54279	-0.0003131	576.8417072330999	19.972	0.048082	19.972	19.948	19.997	0	1197	34	0.9001988	0.02022028	0.9001988	364.8787	0	8.195892						67	3	3	NaN	NaN	NaN	0.63698	1	14871	14871		3.9685	0	1	6200.2	+		31348	12218	18061	18560	25017	25017					0.10051168299469282
YELIQRFT	8	Unmodified	_YELIQRFT_					0	0	0		nc|ENSG00000107736|Q9H251-6|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1069.567671678	1	1069.56767	1068.5604	0.94454	0.0010102	-3.5081	-0.0037522	-2.5636	-0.0027419	1069.5662637279424	31.089	0.14481	31.084	31.036	31.181	-0.0050716	102	73	1.5582114	0.04243481	1.556692	316.09015	0	8.608093						170	7	2	NaN	NaN	NaN	0.50567	1	11219	11219		30.791	6.9407	1	13206			31349	1641	18062	18561	25018	25018					0.028857429602794582
YELQAPQN	8	Unmodified	_YELQAPQN_					0	0	0		ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.4577868776	1	962.457787	961.45051	1.1195	0.0010775	-2.8419	-0.0027352	-1.7223	-0.0016577	962.4548290299226	32.756	0.19301	32.756	32.683	32.876	0	252	76	1.4695803	0.044449806	1.4695803	298.534	0	9.029602						195	9	2	NaN	NaN	NaN	0.72043	1	7358	7358		17.78	0	1	15686			31350	7336	18063	18562	25019	25019					-0.031756823789010014
YELQAPQN	8	Unmodified						0	0	0		ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.457787	961.45051	1.0717	0.0010315	-2.5625	-0.0024663	-1.4908	-0.0014349	962.4558357050387	32.755	0.21715	32.752	32.655	32.872	-0.0031013	252	79	1.4695803	0.046215534	1.4680609	298.534		9.388306	-0.0020956	0.00010768	-0.00075972	NaN	17.78	224	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18693			31351	7336	18063	18562							-0.031756823789010014
YELRQKKWSH	10	Unmodified	_YELRQKKWSH_					0	0	0		ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	687.8674855175501	2	687.867486	1373.72042	1.2686	0.0008726	-2.3507	-0.001617	-1.0822	-0.00074438	687.8656171806198	28.676	0.096542	28.668	28.644	28.74	-0.0083504	1059	52	0.98455137	0.031101525	0.9830319	398.30524	0	12.582306						105	5	3	NaN	NaN	NaN	0.5917	1	18905	18905		15.463	0	1	10283			31352	754	18064	18563	25020	25020					0.04850670957330294
YEMEVSQRL	9	Unmodified	_YEMEVSQRL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7791559012	2	577.779156	1153.54376	2.0203	0.0011673	-6.0905	-0.003519	-4.0702	-0.0023517	577.7751584838016	19.442	0.048063	19.428	19.404	19.452	-0.014141	1215	46	0.8891654	0.02759695	0.88764596	360.3996	0	11.185699						56	3	3	NaN	NaN	NaN	0.44834	1	14422	14422		11.739	4.1985	1	3955.8			31353	1399	18065	18564	25021	25021					-0.026871259879726495
YEMTDSSVPHF	11	Unmodified	_YEMTDSSVPHF_					0	0	0		tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	tr|U7T545|U7T545_FUSNUDUF262domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00305PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.7793528664499	2	656.779353	1311.54415	1.5512	0.0010188	1.8148	0.0011919	3.366	0.0022107	656.780506596497	22.549	0.21682	22.549	22.38	22.597	0	1122	67	0.9460945	0.04034251	0.9460945	382.92804	0	16.32846						344	10	3	NaN	NaN	NaN	0.4078	1	18972	18972		21.771	0	1	63701			31354	13989	18066	18565	25022	25022					-0.09915751058815658
YEPNFIFF	8	Unmodified	_YEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5087598156001	1	1076.50876	1075.50148	2.6454	0.0028478	1.7674	0.0019027	4.4128	0.0047504	1076.5114324333967	37.479	0.072224	37.482	37.434	37.506	0.0028229	135	28	1.5387528	0.015930772	1.5372335	312.1172	0	3.2313538						40	4	2	NaN	NaN	NaN	0.82212	1	11471	11471		6.2502	1.3405	1	1992.7			31355	1008	18067	18566	25023	25023					-0.033247333340341356
YEQEGQARF	9	Unmodified	_YEQEGQARF_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2594449143501	2	564.259445	1126.50434	1.6193	0.00091369	-8.2734	-0.0046684	-6.6542	-0.0037547	564.7564352815281	20.477	0.19242	20.477	20.429	20.622	0	1221	43	0.885486	0.025761366	0.885486	359.01004	0	10.444641						101	9	3	NaN	NaN	NaN	0.33629	1	13945	13945		16.584	1.4088	1	6798.3	+		31356	8873	18068	18567	25024	25024					-0.05385509947177525
YEQEGQARF	9	Unmodified						0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.259445	1126.50434	1.6193	0.00091369	-8.2734	-0.0046684	-6.6542	-0.0037547	564.7564352815281	20.477	0.19242	20.477	20.429	20.622	0	1221	43	0.885486	0.025761366	0.885486	359.01004		10.444641	-0.0050438	0.0022155	0.00075972	NaN	16.584	101	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6798.3	+		31357	8873	18068	18567							-0.05385509947177525
YEQEGQARF	9	Unmodified						0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.259445	1126.50434	1.695	0.0009564	-12.369	-0.0069794	-10.674	-0.006023	564.2525063436627	20.501	0.12029	20.487	20.463	20.584	-0.014143	1221	37	0.885486	0.02208358	0.88396657	359.01004		8.953491	0.0050438	-0.0024066	-0.00075972	NaN	16.584	52	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4345.6	+		31358	8873	18068	18567							-0.05385509947177525
YEQESVVL	8	Unmodified	_YEQESVVL_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4778536177001	1	966.477854	965.470577	1.0677	0.0010319	-0.30075	-0.00029067	0.76697	0.00074126	966.4768792768397	31.67	0.14482	31.67	31.621	31.766	0	327	64	1.425088	0.037421107	1.425088	289.4787	0	7.6013794						245	7	3	NaN	NaN	NaN	0.50906	1	7495	7495		30.61	10.097	1	28417			31359	13823	18069	18568	25025	25025					-0.01353931438939071
YEQESVVL	8	Unmodified	_YEQESVVL_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.4778536177001	1	966.477854	965.470577	0.46627	0.00045064	0.45163	0.00043649	0.9179	0.00088713	966.4777192025198	31.669	0.14481	31.664	31.616	31.761	-0.0044155	324	61	1.42687	0.03563726	1.4253505	289.84067	0	7.2390137						237	7	3	NaN	NaN	NaN	0.5868	1	7343	7343		26.115	1.1539	1	28082			31360	13823	18069	18568	25026	25026					-0.01353931438939071
YEQHPDEYQA	10	Unmodified	_YEQHPDEYQA_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.2649242227501	2	640.264924	1278.5153	1.8249	0.0011684	-4.239	-0.0027141	-2.4141	-0.0015457	640.2621440919368	19.276	0.047998	19.276	19.276	19.324	0	1137	49	0.9369253	0.029355824	0.9369253	379.31894	0	11.884857						80	3	3	NaN	NaN	NaN	0.76053	1	18384	18384		4.7291	1.1593	1	6838.2			31361	5849	18070	18569	25027	25027					-0.11282152363560272
YEQHPDEYQA	10	Unmodified						0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.264924	1278.5153	1.9855	0.0012712	-3.4681	-0.0022205	-1.4826	-0.00094928	640.2623459949926	19.394	0.12017	19.38	19.356	19.476	-0.014141	1137	61	0.9369253	0.036694765	0.93540585	379.31894		14.856079	0.051982	0.00030569	-0.00075972	NaN	4.7291	118	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13588			31362	5849	18070	18569							-0.11282152363560272
YEQRGAQERA	10	Unmodified	_YEQRGAQERA_					0	0	0		nc|ENSG00000068137|Q7Z736-4|PLEKHH3;ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	nc|ENSG00000068137|Q7Z736-4|PLEKHH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.2943503642001	2	604.29435	1206.57415	1.0844	0.00065529	3.1117	0.0018804	4.1961	0.0025357	604.297118335438	24.478	0.096525	24.465	24.441	24.537	-0.012747	1149	79	0.92958635	0.04774952	0.9280669	376.58743	0	19.343964						80	5	2	NaN	NaN	NaN	0.68669	1	15980	15980		8.962	0	1	7491.7			31363	727	18071	18570	25028	25028					-0.020876312785730988
YERFHSFI	8	Unmodified	_YERFHSFI_					0	0	0			REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.7719911836001	2	549.771991	1097.52943	1.1618	0.00063872	-1.1976	-0.00065841	-0.035822	-1.9694E-05	549.771506349772	21.152	0.1686	21.138	21.041	21.21	-0.014004	1242	61	0.87260187	0.036837757	0.8710824	353.89917	0	14.940186						239	8	2	NaN	NaN	NaN	0.5868	1	12408	12408		26.115	1.1539	1	44853	+		31364	9076	18072	18571	25029	25029					-0.015434103539519128
YERFHSFI	8	Unmodified						0	0	0			REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	549.771991	1097.52943	1.1026	0.00060619	-1.7626	-0.00096905	-0.66001	-0.00036285	549.7714685574211	20.959	0.12024	20.959	20.935	21.055	0	1245	58	0.87076044	0.035001516	0.87076044	353.15234		14.195496	-0.089381	-0.00033828	-0.00016098	NaN	26.115	160	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16561	+		31365	9076	18072	18571							-0.015434103539519128
YERFHSFI	8	Unmodified						0	0	0			REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.771991	1097.52943	1.1618	0.00063872	-1.1976	-0.00065841	-0.035822	-1.9694E-05	549.771506349772	21.152	0.1686	21.138	21.041	21.21	-0.014004	1242	61	0.87260187	0.036837757	0.8710824	353.89917		14.940186	0.089381	0.00028299	0.00016098	NaN	26.115	239	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44853	+		31366	9076	18072	18571							-0.015434103539519128
YERSWDVSR	9	Unmodified	_YERSWDVSR_					0	0	0			REV__ENST00000344413.5_1_4:72897830-73003834:+|nuORF	REV__ENST00000344413.5_1_4:72897830-73003834:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.28599401585	2	599.285994	1196.55744	0.6814	0.00040835	0.14562	8.7271E-05	0.82703	0.00049563	599.2858953750742	27.783	0.096535	27.774	27.75	27.846	-0.009552	1182	103	0.9093879	0.062502444	0.90786844	368.43964	0	25.322968						136	5	2	NaN	NaN	NaN	0.36492	1	15708	15708		15.175	2.1725	1	21877	+		31367	11797	18073	18572	25030	25030					-0.0329813216455932
YESLRRDS	8	Unmodified	_YESLRRDS_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5010486758	1	1025.50105	1024.49377	2.5377	0.0026024	6.0515	0.0062058	8.5892	0.0088082	1025.5042633656478	28.219	0.28953	28.219	28.17	28.46	0	261	172	1.4642475	0.10118425	1.4642475	297.19193	0	20.536926						912	13	3	NaN	NaN	NaN	0.528	1	9549	9549		29.598	0.9318	1	176730			31368	708	18074	18573	25031	25031					-0.01749492601629754
YETLSQDIL	9	Unmodified	_YETLSQDIL_					0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2742293113001	2	541.274229	1080.53391	1.2723	0.00068866	-7.1248	-0.0038565	-5.8525	-0.0031678	541.2709256937181	24.333	0.12065	24.333	24.285	24.406	0	1245	61	0.87076044	0.03684169	0.87076044	353.22125	0	14.944702						206	6	3	NaN	NaN	NaN	0.38313	1	11998	11998		14.425	1.4222	1	25230			31369	1252	18075	18574	25032	25032					-0.0031399072170188447
YEVSVSENY	9	Unmodified	_YEVSVSENY_					0	0	0		ENSG00000128045|ENST00000248706|RASL11B	ENSG00000128045|ENST00000248706|RASL11B	ENSG00000128045|ENST00000248706|RASL11B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.24038649395	2	545.240386	1088.46622	2.0682	0.0011277	-5.9624	-0.0032509	-3.8942	-0.0021233	545.2377297358529	18.194	0.11993	18.18	18.156	18.276	-0.01395	1281	67	0.84864825	0.04054779	0.8471288	344.2199	0	16.446594						125	6	2	NaN	NaN	NaN	0.60736	1	11992	11992		5.1889	0	1	16622			31370	2555	18076	18575	25033	25033					-0.07447440652504156
YEWECKQRMR	10	Unmodified	_YEWECKQRMR_					0	0	0		nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1	nc|ENSG00000120658|Q8TC92-2|ENOX1	nc|ENSG00000120658|Q8TC92-2|ENOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	714.8291884864999	2	714.829188	1427.64382	1.2611	0.00090147	-5.3682	-0.0038373	-4.1071	-0.0029359	714.8274634830673	24.14	0.096561	24.14	24.092	24.188	0	1071	40	0.977233	0.023786128	0.977233	395.19574	0	9.619171						43	5	2	NaN	NaN	NaN	0.77421	1	20264	20264		1.9246	0.59347	1	2904.7			31371	2266	18077	18576	25034	25034					-0.05289211925855852
YEWECKQRMR	10	Unmodified						0	0	0		nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1	nc|ENSG00000120658|Q8TC92-2|ENOX1	nc|ENSG00000120658|Q8TC92-2|ENOX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	714.829188	1427.64382	2.7949	0.0019979	-0.34321	-0.00024534	2.4517	0.0017525	714.8286271317739	24.164	0.04825	24.151	24.103	24.151	-0.012749	1068	25	0.97906286	0.014638424	0.9775434	395.93573		5.9198	0.0055736	0.0025868	0.00015523	NaN	1.9246	25	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1590			31372	2266	18077	18576							-0.05289211925855852
YEWYLPKMAKH	11	Unmodified	_YEWYLPKMAKH_					0	0	0		ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	733.3684724350001	2	733.368472	1464.72239	0.1116	8.1842E-05	-2.3084	-0.0016929	-2.1968	-0.0016111	733.366750787958	45.644	0.1921	45.655	45.607	45.8	0.011345	1113	73	0.9515937	0.04395783	0.95007426	384.73364	0	17.77237						137	9	2	NaN	NaN	NaN	0.77278	1	19466	19466		1.5054	0	1	12662			31373	759	18078	18577	25035	25035					0.008619636509138218
YEWYLPKMAKH	11	Unmodified						0	0	0		ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	733.368472	1464.72239	1.332	0.00097683	-3.0596	-0.0022438	-1.7276	-0.001267	733.3661809709467	45.694	0.096092	45.694	45.646	45.742	0	1113	61	0.9515937	0.03665918	0.9515937	384.73364		14.821472	0.0194	-0.00047775	0.00075972	NaN	1.5054	64	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6918.2			31374	759	18078	18577							0.008619636509138218
YEYCMSEYLR	10	Unmodified	_YEYCMSEYLR_					0	0	0		ENST00000489450.1_1_1:76253229-76255866:+|nuORF;ENST00000461653.5_1_1:76253229-76255104:+|nuORF;RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant;ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	ENST00000489450.1_1_1:76253229-76255866:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.7835809646001	2	678.783581	1355.55261	0.99883	0.00067799	5.1859	0.0035201	6.1847	0.0041981	678.7860919080662	27.542	0.28958	27.533	27.508	27.798	-0.0095501	1119	82	0.9479278	0.049487233	0.94640833	383.54013	0	20.02298						377	13	3	NaN	NaN	NaN	0.77884	1	18721	18721		0.79988	0.20265	1	55450			31375	3121	18079	18578	25036	25036					-0.11094520413803366
YFAGAGGGG	9	Unmodified	_YFAGAGGGG_					0	0	0			REV__ENSG00000090470|ENST00000204549|PDCD7	REV__ENSG00000090470|ENST00000204549|PDCD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	756.3311298010002	1	756.33113	755.323853	1.5354	0.0011613	4.4289	0.0033497	5.9643	0.004511	756.3341487021333	26.65	0.09654	26.65	26.625	26.722	0	564	67	1.2837118	0.03954506	1.2837118	261.77933	0	8.064209						128	5	2	NaN	NaN	NaN	0.65388	1	4158	4158		3.1533	0	1	11642	+		31376	8723	18080	18579	25037	25037					-0.06359563813362001
YFAGAGGGG	9	Unmodified						0	0	0			REV__ENSG00000090470|ENST00000204549|PDCD7	REV__ENSG00000090470|ENST00000204549|PDCD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	756.33113	755.323853	1.5354	0.0011613	4.4289	0.0033497	5.9643	0.004511	756.3341487021333	26.65	0.09654	26.65	26.625	26.722	0	564	67	1.2837118	0.03954506	1.2837118	261.77933		8.064209	0.005483	-0.00030834	-0.00013879	NaN	3.1533	128	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11642	+		31377	8723	18080	18579							-0.06359563813362001
YFAIPLRLF	9	Unmodified	_YFAIPLRLF_					0	0	0			REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	REV__tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.55857702196664	3	380.558577	1138.6539	1.8668	0.00071042	3.0064	0.0011441	4.8732	0.0018545	380.5602027891041	16.734	0.071978	16.734	16.734	16.806	0	1548	28	0.6837494	0.016754866	0.6837494	415.7693	0	10.188202						42	4	2	NaN	NaN	NaN	0.45297	1	14415	14415		6.9844	1.0646	1	2976.2	+		31378	13629	18081	18580	25038	25038					0.09012087133351088
YFDAIPVTM	9	Oxidation (M)	_YFDAIPVTM(Oxidation (M))_		YFDAIPVTM(1)		YFDAIPVTM(55)	0	0	1		ENSG00000153395|ENST00000283415|LPCAT1;ENST00000507282.1_1_5:1488500-1495016:-|nuORF	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5019598781998	1	1072.50196	1071.49468	2.1712	0.0023286	-2.715	-0.0029119	-0.54385	-0.00058329	1072.4992419755083	26.046	0.048262	26.046	26.046	26.094	0	102	109	1.5582114	0.063712955	1.5582114	316.0791	0	12.924011						195	3	3	NaN	NaN	NaN	0.032764	1	11618	11618		55.494	18.907	1	18651			31379	3808	18082	18581	25039	25039		421			-0.03820414276947304
YFDAIPVTM	9	Oxidation (M)	_YFDAIPVTM(Oxidation (M))_		YFDAIPVTM(1)		YFDAIPVTM(53)	0	0	1		ENSG00000153395|ENST00000283415|LPCAT1;ENST00000507282.1_1_5:1488500-1495016:-|nuORF	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5019598781998	1	1072.50196	1071.49468	2.0287	0.0021758	-4.6845	-0.0050241	-2.6558	-0.0028483	1072.4954476311834	26.046	0.1207	26.035	26.035	26.156	-0.011135	105	103	1.5564433	0.060160518	1.5549239	315.72046	0	12.20343						223	6	3	NaN	NaN	NaN	0.036546	1	11316	11316		52.624	29.29	1	21687			31380	3808	18082	18581	25040	25040		421			-0.03820414276947304
YFDEPVEL	8	Unmodified	_YFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4669545804	1	1011.46695	1010.45968	1.9481	0.0019705	-0.058424	-5.9094E-05	1.8897	0.0019114	1011.4670922896721	27.519	0.21719	27.519	27.495	27.712	0	183	145	1.510409	0.08521235	1.510409	306.6177	0	17.29837						750	10	5	NaN	NaN	NaN	0.050534	1	8991	8991		78.398	31.358	1	190740			31381	6077	18083	18582	25041	25041					-0.04513333813235931
YFDEPVEL	8	Unmodified	_YFDEPVEL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.4669545804	1	1011.46695	1010.45968	1.6839	0.0017032	-0.29763	-0.00030105	1.3862	0.0014021	1011.4671281368106	27.542	0.26543	27.533	27.484	27.75	-0.0095501	180	136	1.5121819	0.0798738	1.5106624	306.9776	0	16.21463						772	12	4	NaN	NaN	NaN	7.7007E-06	1	8815	8815		128.99	54.659	1	189230			31382	6077	18083	18582	25042	25042					-0.04513333813235931
YFDESLVLL	9	Unmodified	_YFDESLVLL_					0	0	0		GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant;ENSG00000128242|ENST00000406361|GAL3ST1;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENSG00000175229|ENST00000312006|GAL3ST3;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant	GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1098.5717540029	1	1098.57175	1097.56448	1.4046	0.001543	-1.486	-0.0016325	-0.081454	-8.9483E-05	1099.5716821982762	34.203	0.19294	34.203	34.107	34.3	0	63	58	1.5811787	0.033553362	1.5811787	320.64105	0	6.804138						242	9	3	NaN	NaN	NaN	0.12945	1	12751	12751		31.561	16.386	1	28239			31383	2558	18084	18583	25043	25043					0.01959787663327006
YFDESLVLL	9	Unmodified	_YFDESLVLL_					0	0	0		GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant;ENSG00000128242|ENST00000406361|GAL3ST1;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENSG00000175229|ENST00000312006|GAL3ST3;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant	GAL3ST1|p.D264Y|1|0.19|ENSG00000128242|chr22:30555435-30555435|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1098.5717540029	1	1098.57175	1097.56448	1.5717	0.0017266	-1.6539	-0.0018169	-0.082186	-9.0287E-05	1099.5719595340634	34.202	0.19307	34.201	34.105	34.298	-0.0012474	63	58	1.5811787	0.033549786	1.5796592	320.64105	0	6.8034363						220	9	3	NaN	NaN	NaN	0.043119	1	12418	12418		49.833	5.5305	1	23390			31384	2558	18084	18583	25044	25044					0.01959787663327006
YFDLPGAL	8	Unmodified	_YFDLPGAL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1;ENST00000417846.2_1_6:116432031-116439170:+|nuORF;NT5DC1-SEC63|1|fusion	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	895.4559959636	1	895.455996	894.448719	0.90497	0.00081036	-0.072433	-6.486E-05	0.83254	0.0007455	895.4556228056376	31.235	0.096527	31.235	31.187	31.284	0	276	58	1.4553556	0.033803344	1.4553556	295.957	0	6.8741455						125	5	3	NaN	NaN	NaN	0.75682	1	5988	5988		15.013	0	1	12806			31385	5111	18085	18584	25045	25045					-0.0027269139686723065
YFDLPGAL	8	Unmodified	_YFDLPGAL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1;ENST00000417846.2_1_6:116432031-116439170:+|nuORF;NT5DC1-SEC63|1|fusion	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	895.4559959636	1	895.455996	894.448719	0.99426	0.00089031	-0.0049233	-4.4086E-06	0.98934	0.00088591	895.4557024051355	31.21	0.14483	31.205	31.181	31.326	-0.0050716	273	58	1.4571344	0.033796072	1.4556149	296.31873	0	6.8726807						128	7	2	NaN	NaN	NaN	0.27293	1	5873	5873		44.247	5.639	1	15009			31386	5111	18085	18584	25046	25046					-0.0027269139686723065
YFDPANGKF	9	Unmodified	_YFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.75072442525	2	529.750724	1057.4869	1.6369	0.00086713	0.39601	0.00020979	2.0329	0.0010769	529.7518566715024	21.175	0.31299	21.175	21.103	21.416	0	1284	88	0.8468043	0.05348122	0.8468043	343.5977	0	21.70044						536	14	4	NaN	NaN	NaN	0.02857	1	10975	10975		60.982	13.846	1	84504			31387	4557	18086	18585	25047	25047					-0.03954805482203483
YFDPANGKF	9	Unmodified	_YFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.75072442525	2	529.750724	1057.4869	0.93799	0.0004969	0.6185	0.00032765	1.5565	0.00082455	529.7511713403959	21.176	0.24068	21.162	21.089	21.33	-0.014004	1284	97	0.8468043	0.05902964	0.8452849	343.5977	0	23.951782						497	11	5	NaN	NaN	NaN	0.030669	1	10748	10748		58.235	24.537	1	76538			31388	4557	18086	18585	25048	25048					-0.03954805482203483
YFDPQYFEF	9	Unmodified	_YFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	628.26894696815	2	628.268947	1254.52334	1.3275	0.00083405	-1.8708	-0.0011754	-0.5433	-0.00034134	628.26764547318	32.683	0.21719	32.683	32.611	32.828	0	1152	67	0.92775106	0.040390372	0.92775106	375.6815	0	16.35559						207	10	2	NaN	NaN	NaN	0.084037	1	17883	17883		38.131	18.967	1	41218			31389	961	18087	18586	25049	25049					-0.09373973376159483
YFDPQYFEF	9	Unmodified	_YFDPQYFEF_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I;EIF3I|p.E322K|1|0.17|ENSG00000084623|chr1:32231182-32231182|G/A|missense_variant	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	628.26894696815	2	628.268947	1254.52334	0.79349	0.00049853	-1.6595	-0.0010426	-0.86602	-0.00054409	628.2678740732495	32.682	0.16893	32.679	32.631	32.8	-0.0031052	1149	76	0.92958635	0.045895696	0.9280669	376.42462	0	18.58493						216	8	2	NaN	NaN	NaN	0.16939	1	17116	17116		27.296	9.3265	1	40294			31390	961	18087	18586	25050	25050					-0.09373973376159483
YFDSGDYNM	9	Unmodified	_YFDSGDYNM_					0	0	0		ENST00000565288.1_1_15:52844133-52849247:-|nuORF;nc|ENSG00000128989|P56211-2|ARPP19;ENSG00000128989|ENST00000249822|ARPP19;nc|ENSG00000143420|O43768-6|ENSA;nc|ENSG00000143420|O43768-5|ENSA;nc|ENSG00000143420|O43768-2|ENSA;ENSG00000143420|ENST00000369014|ENSA;nc|ENSG00000143420|O43768-9|ENSA;nc|ENSG00000143420|O43768-7|ENSA;nc|ENSG00000143420|O43768-3|ENSA;nc|ENSG00000143420|O43768-4|ENSA	ENST00000565288.1_1_15:52844133-52849247:-|nuORF	ENST00000565288.1_1_15:52844133-52849247:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1111.4037023965998	1	1111.4037	1110.39643	2.1182	0.0023541	1.5235	0.0016932	3.6417	0.0040474	1111.4058218540742	22.718	0.14469	22.718	22.694	22.838	0	114	43	1.5511382	0.024764061	1.5511382	314.5041	0	5.021118						86	7	2	NaN	NaN	NaN	0.059222	1	13283	13283		42.995	27.982	1	5599.3			31391	2589	18088	18587	25051	25051					-0.15435642592797194
YFDSGDYNM	9	Unmodified	_YFDSGDYNM_					0	0	0		ENST00000565288.1_1_15:52844133-52849247:-|nuORF;nc|ENSG00000128989|P56211-2|ARPP19;ENSG00000128989|ENST00000249822|ARPP19;nc|ENSG00000143420|O43768-6|ENSA;nc|ENSG00000143420|O43768-5|ENSA;nc|ENSG00000143420|O43768-2|ENSA;ENSG00000143420|ENST00000369014|ENSA;nc|ENSG00000143420|O43768-9|ENSA;nc|ENSG00000143420|O43768-7|ENSA;nc|ENSG00000143420|O43768-3|ENSA;nc|ENSG00000143420|O43768-4|ENSA	ENST00000565288.1_1_15:52844133-52849247:-|nuORF	ENST00000565288.1_1_15:52844133-52849247:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1111.4037023965998	1	1111.4037	1110.39643	1.7117	0.0019024	1.4457	0.0016068	3.1575	0.0035092	1111.405326760018	22.693	0.096458	22.68	22.68	22.776	-0.01354	114	40	1.5511382	0.022991657	1.5496187	314.5041	0	4.6617126						64	5	2	NaN	NaN	NaN	0.048656	1	12904	12904		47.482	22.521	1	3996.5			31392	2589	18088	18587	25052	25052					-0.15435642592797194
YFDVSHEHL	9	Unmodified	_YFDVSHEHL_					0	0	0		ENST00000478361.6_1_10:94240585-94297282:-|nuORF;ENSG00000119912|ENST00000265986|IDE	ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENST00000478361.6_1_10:94240585-94297282:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7643631167501	2	573.764363	1145.51417	1.6994	0.00097503	-0.4354	-0.00024982	1.264	0.00072522	573.7639476490737	19.202	0.072084	19.188	19.164	19.236	-0.014141	1167	31	0.91857195	0.018363178	0.9170525	372.34958	0	7.4436646						57	4	2	NaN	NaN	NaN	0.51576	1	14151	14151		8.962	3.4961	1	4904.4			31393	2239	18089	18588	25053	25053					-0.05276321941801143
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_		YFEELITM(1)L		YFEELITM(42)L	0	0	1		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.788657955	2	587.788658	1173.56276	1.3712	0.00080598	-2.7087	-0.0015921	-1.3375	-0.00078616	587.7868756023526	32.852	0.0965	32.852	32.804	32.9	0	1191	55	0.90387505	0.033082366	0.90387505	366.2879	0	13.406372						207	5	4	NaN	NaN	NaN	0.062072	1	15598	15598		41.785	23.815	1	55561			31394	170;3312	18090	18589	25054	25054		14			-0.017075894169465755
YFEELITML	9	Oxidation (M)	_YFEELITM(Oxidation (M))L_		YFEELITM(1)L		YFEELITM(44)L	0	0	1		CLTC-VMP1|7|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|12|fusion;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	CLTC-VMP1|7|fusion;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.788657955	2	587.788658	1173.56276	0.98025	0.00057618	-2.0852	-0.0012257	-1.1049	-0.00064947	587.7871684510766	32.851	0.096485	32.848	32.8	32.896	-0.0031052	1185	73	0.90755045	0.044095516	0.906031	367.77734	0	17.869354						221	5	4	NaN	NaN	NaN	0.056143	1	15042	15042		44.302	29.877	1	56939			31395	170;3312	18090	18589	25055	25055		14			-0.017075894169465755
YFEKHRWP	8	Unmodified	_YFEKHRWP_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7932579419501	2	581.793258	1161.57196	1.6754	0.00097471	-2.6429	-0.0015376	-0.96753	-0.0005629	581.7918007864836	23.923	0.12057	23.91	23.886	24.006	-0.013048	1023	127	1.0064877	0.07668632	1.0049683	407.91977	0	31.08023						293	6	3	NaN	NaN	NaN	0.84887	1	14687	14687		0.32989	0	1	29700			31396	381	18091	18590	25056	25056					-0.0023601522573244438
YFELNSVFW	9	Unmodified	_YFELNSVFW_					0	0	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7873068968	2	602.787307	1203.56006	1.2794	0.00077121	2.8357	0.0017093	4.1152	0.0024806	602.7889089599377	21.464	0.12059	21.464	21.44	21.561	0	1179	73	0.9112251	0.044090807	0.9112251	369.1595	0	17.862244						128	6	2	NaN	NaN	NaN	0.41766	1	16572	16572		13.003	0.95414	1	17144	+		31397	10090	18092	18591	25057	25057					-0.03357676759583228
YFENFDKYQ	9	Unmodified	_YFENFDKYQ_					0	0	0		tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	418.5206276998666	3	418.520628	1252.54005	0.8368	0.00035022	2.4714	0.0010344	3.3082	0.0013846	418.85517002588097	37.602	0.14441	37.602	37.554	37.699	0	1431	43	0.75620437	0.025951624	0.75620437	459.32748	0	15.763336						90	7	2	NaN	NaN	NaN	0.59509	1	17836	17836		3.261	0	1	6493.8			31398	13901	18093	18592	25058	25058					-0.07611472490202686
YFENFDKYQ	9	Unmodified						0	0	0		tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	418.520628	1252.54005	1.764	0.00073828	1.8963	0.00079366	3.6604	0.0015319	418.8556618494025	37.6	0.09639	37.603	37.53	37.627	0.0028267	1428	37	0.7580582	0.022239447	0.75653875	460.4535		13.508514	0.00018274	-0.00038545	0.00016718	NaN	3.261	47	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2816.3			31399	13901	18093	18592							-0.07611472490202686
YFFLEVVK	8	Unmodified	_YFFLEVVK_					0	0	0			REV__ENSG00000108960|ENST00000262065|MMD	REV__ENSG00000108960|ENST00000262065|MMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	522.7918609584501	2	522.791861	1043.56917	1.7131	0.0008956	-2.2422	-0.0011722	-0.52909	-0.0002766	522.7909346696754	20.405	0.072325	20.391	20.367	20.439	-0.014141	1203	40	0.8965218	0.023904443	0.89500237	363.83334	0	9.70108						58	4	2	NaN	NaN	NaN	0.84876	1	10160	10160		0.39566	0	1	5261.6	+		31400	9046	18094	18593	25059	25059					0.049127165967547626
YFFLEVVK	8	Unmodified						0	0	0			REV__ENSG00000108960|ENST00000262065|MMD	REV__ENSG00000108960|ENST00000262065|MMD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	522.791861	1043.56917	1.3875	0.00072535	-1.3848	-0.00072396	0.0026677	1.3946E-06	522.791270070804	20.381	0.048059	20.381	20.357	20.405	0	1203	31	0.8965218	0.018389046	0.8965218	363.83334		7.4627686	-0.0049645	0.0002879	0.00075972	NaN	0.39566	52	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4418.2	+		31401	9046	18094	18593							0.049127165967547626
YFFLEVVK	8	Unmodified						0	0	0			REV__ENSG00000108960|ENST00000262065|MMD	REV__ENSG00000108960|ENST00000262065|MMD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	522.791861	1043.56917	1.7131	0.0008956	-2.2422	-0.0011722	-0.52909	-0.0002766	522.7909346696754	20.405	0.072325	20.391	20.367	20.439	-0.014141	1203	40	0.8965218	0.023904443	0.89500237	363.83334		9.70108	0.0049645	-0.00060859	-0.00075972	NaN	0.39566	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5261.6	+		31402	9046	18094	18593							0.049127165967547626
YFGEKALI	8	Unmodified	_YFGEKALI_					0	0	0		nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	940.5138451935001	1	940.513845	939.506569	1.0607	0.00099762	0.43163	0.00040596	1.4923	0.0014036	940.513691358013	31.886	0.0965	31.881	31.857	31.954	-0.0044155	276	55	1.4553556	0.03201568	1.4538362	295.74188	0	6.50589						146	5	3	NaN	NaN	NaN	0.67593	1	6677	6677		20.555	2.7565	1	14005			31403	3177	18095	18594	25060	25060					0.03439570528564673
YFGPDFKL	8	Unmodified	_YFGPDFKL_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;HDAC1|p.E335K|1|0.39|ENSG00000116478|chr1:32331497-32331497|G/A|missense_variant;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	493.75273579795004	2	493.752736	985.490919	2.0807	0.0010274	-2.466	-0.0012176	-0.38525	-0.00019022	493.751214232536	25.998	0.096539	25.998	25.974	26.07	0	1296	34	0.8394264	0.020294726	0.8394264	340.92374	0	8.242462						78	5	2	NaN	NaN	NaN	0.67765	1	8058	8058		20.449	2.6683	1	9057			31404	2083;5644	18096	18595	25061	25061					-0.0024071598846830966
YFGPDFKL	8	Unmodified						0	0	0		ENSG00000116478|ENST00000373548|HDAC1;HDAC1|p.E335K|1|0.39|ENSG00000116478|chr1:32331497-32331497|G/A|missense_variant;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	493.752736	985.490919	1.7499	0.00086402	2.5298	0.0012491	4.2797	0.0021131	493.7536410765511	26.022	0.14483	26.011	25.962	26.107	-0.011135	1296	34	0.8394264	0.020294726	0.83790696	340.92374		8.242493	0.0063917	0.0024754	-0.00075972	NaN	20.449	107	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10232			31405	2083;5644	18096	18595							-0.0024071598846830966
YFGPHASS	8	Unmodified	_YFGPHASS_					0	0	0			REV__ENST00000479155.1_1_17:18144816-18146132:+|nuORF	REV__ENST00000479155.1_1_17:18144816-18146132:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.3838936530001	1	865.383894	864.376617	1.4063	0.001217	-8.7358	-0.0075598	-7.3295	-0.0063428	865.3766586872309	27.88	0.12071	27.87	27.75	27.87	-0.009552	414	37	1.3733286	0.021450758	1.3718091	279.42343	0	4.364441						82	6	2	NaN	NaN	NaN	0.8439	1	5443	5443		3.1533	0	1	4735.5	+		31406	12368	18097	18596	25062	25062					-0.06099605750569026
YFHEALRAF	9	Unmodified	_YFHEALRAF_					0	0	0		nc|ENSG00000132604|Q15554-4|TERF2;ENSG00000132604|ENST00000254942|TERF2	nc|ENSG00000132604|Q15554-4|TERF2	nc|ENSG00000132604|Q15554-4|TERF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.1978193331666	3	385.197819	1152.57163	1.5031	0.00057901	-2.6036	-0.0010029	-1.1005	-0.0004239	385.19658428791246	20.093	0.072056	20.093	20.069	20.141	0	1491	31	0.7190863	0.018579185	0.7190863	437.19366	0	11.295868						65	4	2	NaN	NaN	NaN	0.44082	1	14890	14890		10.965	6.9966	1	6656.7			31407	2777	18098	18597	25063	25063					0.0014456505439284228
YFHSSETAFY	10	Unmodified	_YFHSSETAFY_					0	0	0			REV__ENSG00000111266|ENST00000298573|DUSP16	REV__ENSG00000111266|ENST00000298573|DUSP16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	626.2694782844001	2	626.269478	1250.5244	2.1715	0.00136	-2.2879	-0.0014329	-0.11641	-7.2906E-05	626.2677039873275	14.093	0.048001	14.093	14.093	14.141	0	1230	28	0.8799654	0.016563535	0.8799654	356.34366	0	6.707428						36	3	2	NaN	NaN	NaN	0.77928	1	17778	17778		0.69115	0.093923	1	1932.4	+		31408	9093	18099	18598	25064	25064					-0.09083759007239678
YFHSSETAFY	10	Unmodified						0	0	0			REV__ENSG00000111266|ENST00000298573|DUSP16	REV__ENSG00000111266|ENST00000298573|DUSP16	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	626.269478	1250.5244	2.1715	0.00136	-2.2879	-0.0014329	-0.11641	-7.2906E-05	626.2677039873275	14.093	0.048001	14.093	14.093	14.141	0	1230	28	0.8799654	0.016563535	0.8799654	356.34366		6.707428	0	0	0	NaN	0.69115	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1932.4	+		31409	9093	18099	18598							-0.09083759007239678
YFHTLPYLLW	10	Unmodified	_YFHTLPYLLW_					0	0	0		ACTL6A-ALG3|1|fusion;nc|ENSG00000214160|Q92685-2|ALG3;ACTL6A-ALG3|2|fusion;ENSG00000214160|ENST00000397676|ALG3;ENST00000485912.1_1_3:183960304-183960812:-|nuORF	ACTL6A-ALG3|1|fusion	ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8555238477501	2	676.855524	1351.69649	0.71427	0.00048346	-4.6335	-0.0031362	-3.9193	-0.0026528	677.3546219938781	33.166	0.096531	33.166	33.142	33.238	0	1074	40	0.9754029	0.023793817	0.9754029	394.6682	0	9.627441						107	5	3	NaN	NaN	NaN	0.47601	1	19569	19569		20.449	9.2783	1	7101.5			31410	5	18100	18599	25065	25065					0.034714374709437834
YFIFCRCI	8	Unmodified	_YFIFCRCI_					0	0	0			REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF	REV__ENST00000265870.7_1_10:70248298-70276562:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.5056054681	1	1064.50561	1063.49833	1.0456	0.0011131	-10.32	-0.010985	-9.274	-0.0098723	1064.493572921354	29.811	0.12066	29.803	29.779	29.9	-0.0070648	111	64	1.5529068	0.037152052	1.5513873	315.0332	0	7.5369263						153	6	2	NaN	NaN	NaN	0.66957	1	11009	11009		20.952	1.6678	1	17686	+		31411	11575	18101	18600	25066	25066					-0.030880229840704487
YFIGGSDKTF	10	Unmodified	_YFIGGSDKTF_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1134.5466018849	1	1134.5466	1133.53933	2.0217	0.0022937	2.9657	0.0033648	4.9874	0.0056585	1134.550802243146	36.278	0.024101	36.278	36.278	36.302	0	60	55	1.582944	0.031775594	1.582944	320.87247	0	6.441101						65	2	2	NaN	NaN	NaN	0.22448	1	14221	14221		33.425	0.97255	1	8096.3			31412	13744	18102	18601	25067	25067					-0.02210267139230382
YFILDEFLL	9	Unmodified	_YFILDEFLL_					0	0	0		AP1S2|p.G120V|1|0.2|ENSG00000182287|chrX:15845446-15845446|C/A|missense_variant;nc|ENSG00000182287|P56377|AP1S2;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000182287|P56377-2|AP1S2	AP1S2|p.G120V|1|0.2|ENSG00000182287|chrX:15845446-15845446|C/A|missense_variant	AP1S2|p.G120V|1|0.2|ENSG00000182287|chrX:15845446-15845446|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.8155330200001	2	586.815533	1171.61651	0.75498	0.00044303	-9.9128	-0.005817	-9.1578	-0.0053739	586.8097393746424	33.43	0.19306	33.428	33.38	33.573	-0.0018501	1179	94	0.9112251	0.056972206	0.90970564	369.27362	0	23.087952						504	8	4	NaN	NaN	NaN	0.098515	1	15000	15000		36.036	0	1	100730			31413	34	18103	18602	25068	25068					0.037569510770936176
YFINRSWEW	9	Unmodified	_YFINRSWEW_					0	0	0		ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8091049714001	2	650.809105	1299.60366	1.4185	0.00092317	-1.1482	-0.00074728	0.27026	0.00017589	650.807919471038	26.94	0.19307	26.94	26.915	27.109	0	1158	100	0.92408	0.060517013	0.92408	374.0536	0	24.496368						465	9	4	NaN	NaN	NaN	0.013696	1	18770	18770		81.699	49.247	1	93271			31414	673	18104	18603	25069	25069					-0.03416067262423894
YFINRSWEW	9	Unmodified	_YFINRSWEW_					0	0	0		ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8091049714001	2	650.809105	1299.60366	0.99963	0.00065057	-2.2545	-0.0014673	-1.2549	-0.00081669	650.8075001667654	26.987	0.21722	26.977	26.929	27.146	-0.010126	1158	97	0.92408	0.058686316	0.9225606	374.0536	0	23.75534						483	10	4	NaN	NaN	NaN	0.024221	1	17942	17942		66.656	37.058	1	86357			31415	673	18104	18603	25070	25070					-0.03416067262423894
YFIVYSSYL	9	Unmodified	_YFIVYSSYL_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7920579237001	2	577.792058	1153.56956	1.1345	0.0006555	-2.8678	-0.001657	-1.7333	-0.0010015	577.7908956156048	28.435	0.072426	28.426	28.402	28.474	-0.0089798	1194	55	0.902037	0.033093095	0.9005176	365.61667	0	13.413391						90	4	2	NaN	NaN	NaN	0.51184	1	14433	14433		9.1232	0.16122	1	11749	+		31416	8515	18105	18604	25071	25071					-0.0010790847404678061
YFIVYSSYL	9	Unmodified						0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.792058	1153.56956	1.7447	0.0010081	-7.3349	-0.004238	-5.5902	-0.0032299	577.7883399542566	28.412	0.12067	28.412	28.388	28.508	0	1194	46	0.902037	0.02757907	0.902037	365.6167		11.178436	-0.0072459	-0.0021247	0.00075972	NaN	9.1232	96	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9839.1	+		31417	8515	18105	18604							-0.0010790847404678061
YFIVYSSYL	9	Unmodified						0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	577.792058	1153.56956	1.1345	0.0006555	-2.8678	-0.001657	-1.7333	-0.0010015	577.7908956156048	28.435	0.072426	28.426	28.402	28.474	-0.0089798	1194	55	0.902037	0.033093095	0.9005176	365.61667		13.413391	0.0072459	0.0030374	-0.00075972	NaN	9.1232	90	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11749	+		31418	8515	18105	18604							-0.0010790847404678061
YFIYPGHL	8	Unmodified	_YFIYPGHL_					0	0	0			REV__nc|ENSG00000150347|Q14865-3|ARID5B	REV__nc|ENSG00000150347|Q14865-3|ARID5B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	505.26072800555	2	505.260728	1008.5069	1.3829	0.00069872	-10.721	-0.0054169	-9.3381	-0.0047182	505.25552911525784	13.254	0.047915	13.243	13.196	13.243	-0.010098	1314	79	0.8283535	0.047992766	0.8268341	336.32095	0	19.485596						68	3	2	NaN	NaN	NaN	0.83849	1	8750	8750		4.0537	0.84207	1	5355	+		31419	10007	18106	18605	25072	25072					0.0029899024841597566
YFKDEDIFEYY	11	Unmodified	_YFKDEDIFEYY_					0	0	0		tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1	tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1	tr|U7T237|U7T237_FUSNURibonucleaseGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00457PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	766.33501516065	2	766.335015	1530.65548	1.4213	0.0010892	-1.8799	-0.0014406	-0.45863	-0.00035146	766.3353810323973	27.157	0.096502	27.157	27.133	27.229	0	1002	46	1.0192708	0.027383566	1.0192708	411.92963	0	11.066803						98	5	4	NaN	NaN	NaN	0.75376	1	20663	20663		3.9281	0.7165	1	6932.7			31420	13953	18107	18606	25073	25073					-0.08862413149859094
YFKDIEII	8	Unmodified	_YFKDIEII_					0	0	0		ENST00000434304.2_1_22:17154630-17158220:-|nuORF;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5662746945	1	1040.56627	1039.559	2.1449	0.002232	-3.9879	-0.0041497	-1.843	-0.0019178	1040.5621167204856	25.998	0.16897	25.998	25.95	26.119	0	93	82	1.5635144	0.047736645	1.5635144	317.27866	0	9.687042						342	8	4	NaN	NaN	NaN	0.11528	1	10202	10202		61.271	26.832	1	57789			31421	5232	18108	18607	25074	25074					0.04080108871517041
YFKDIEII	8	Unmodified	_YFKDIEII_					0	0	0		ENST00000434304.2_1_22:17154630-17158220:-|nuORF;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.5662746945	1	1040.56627	1039.559	2.1538	0.0022412	-4.2918	-0.0044659	-2.138	-0.0022247	1040.561606367517	25.998	0.21724	25.987	25.938	26.156	-0.011137	93	97	1.5635144	0.05658567	1.5619949	317.27866	0	11.482758						329	10	4	NaN	NaN	NaN	0.26796	1	9985	9985		44.638	15.04	1	56806			31422	5232	18108	18607	25075	25075					0.04080108871517041
YFKDMKADY	9	Unmodified	_YFKDMKADY_					0	0	0		tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.77079955285	2	590.7708	1179.52705	1.6732	0.00098851	-7.3616	-0.004349	-5.6884	-0.0033605	590.7663727464302	16.758	0.071978	16.758	16.734	16.806	0	1200	76	0.89836043	0.045945227	0.89836043	364.0318	0	18.617859						143	4	2	NaN	NaN	NaN	0.36492	1	15803	15803		15.175	1.7123	1	15039			31423	13859	18109	18608	25076	25076					-0.055536268739388106
YFKKAQKVRT	10	Unmodified	_YFKKAQKVRT_					0	0	0		tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1	tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1	tr|U7ST97|U7ST97_FUSNUGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatAPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.87732192235	2	634.877322	1267.74009	1.7338	0.0011008	-0.89787	-0.00057004	0.83596	0.00053073	634.8776137247288	39.356	0.2883	39.361	39.337	39.625	0.0053368	1248	73	0.8689189	0.044186175	0.86739945	351.81815	0	17.890625						554	13	3	NaN	NaN	NaN	0.77967	1	17377	17377		0.59723	0.081187	1	220370			31424	13848	18110	18609	25077	25077					0.1169304696807103
YFKKKHPSML	10	Unmodified	_YFKKKHPSML_					0	0	0		ENST00000551270.1_1_12:104283206-104309165:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P	ENST00000551270.1_1_12:104283206-104309165:-|nuORF	ENST00000551270.1_1_12:104283206-104309165:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	426.9057594348667	3	426.905759	1277.69545	1.547	0.00066042	-3.7102	-0.0015839	-2.1632	-0.00092347	426.90441107003517	16.901	0.16781	16.901	16.83	16.997	0	1428	37	0.7580582	0.022244275	0.7580582	460.35483	0	13.508545						129	8	3	NaN	NaN	NaN	0.65442	1	18378	18378		6.1406	2.5461	1	13038			31425	7546	18111	18610	25078	25078					0.06770899830394228
YFKKPLNIYF	10	Unmodified	_YFKKPLNIYF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	666.87117391195	2	666.871174	1331.72779	2.5031	0.0016692	-2.1644	-0.0014434	0.33868	0.00022586	666.8701481994544	23.513	0.12061	23.5	23.476	23.596	-0.013294	1065	31	0.9808926	0.018294036	0.97937316	396.9497	0	7.40329						83	6	3	NaN	NaN	NaN	0.75966	1	18426	18426		3.9685	0	1	4546.5			31426	500	18112	18611	25079	25079					0.0752001050502713
YFKRYQVKF	9	Unmodified	_YFKRYQVKF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.9046358287333	3	426.904636	1277.69208	1.9331	0.00082524	0.96806	0.00041327	2.9011	0.0012385	427.2384304765579	17.738	0.095888	17.724	17.724	17.82	-0.013786	1410	37	0.76917666	0.02222979	0.7676573	467.10687	0	13.499756						59	5	2	NaN	NaN	NaN	0.51576	1	17557	17557		8.2775	1.9212	1	4567.5			31427	2321	18113	18612	25080	25080					0.064339730480242
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.3233282623501	2	543.323328	1084.6321	1.3439	0.00073018	-0.46155	-0.00025077	0.88236	0.00047941	543.3230175916262	30.463	0.14478	30.463	30.439	30.584	0	1209	55	0.892844	0.033103883	0.892844	362.1621	0	13.427826						183	7	3	NaN	NaN	NaN	0.20577	1	12182	12182		24.961	11.958	1	27092			31428	494	18114	18613	25081	25081					0.09317282384790815
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.3233282623501	2	543.323328	1084.6321	1.0412	0.00056571	0.29983	0.0001629	1.341	0.00072861	543.3237041738744	30.486	0.19303	30.48	30.432	30.625	-0.0057545	1206	58	0.894683	0.034933507	0.89316356	362.90805	0	14.169983						264	9	3	NaN	NaN	NaN	0.074859	1	11871	11871		39.459	21.678	1	32183			31429	494	18114	18613	25082	25082					0.09317282384790815
YFLKLISMI	9	Unmodified	_YFLKLISMI_					0	0	0			REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3302960147	2	564.330296	1126.64604	1.622	0.00091536	-5.9754	-0.0033721	-4.3533	-0.0024567	564.3271385683694	32.828	0.21718	32.828	32.78	32.997	0	1191	73	0.90387505	0.04410982	0.90387505	366.4651	0	17.88379						351	10	4	NaN	NaN	NaN	0.20577	1	13979	13979		24.961	8.1027	1	93673	+		31430	13448	18115	18614	25083	25083					0.0877819182157964
YFLKLISMI	9	Unmodified						0	0	0			REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	564.330296	1126.64604	1.622	0.00091536	-5.9754	-0.0033721	-4.3533	-0.0024567	564.3271385683694	32.828	0.21718	32.828	32.78	32.997	0	1191	73	0.90387505	0.04410982	0.90387505	366.4651		17.88379	-0.034413	-0.00026772	-0.00015919	NaN	24.961	351	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93673	+		31431	13448	18115	18614							0.0877819182157964
YFLSFLGFFL	10	Unmodified	_YFLSFLGFFL_					0	0	0			REV__OR2A7|p.L26F|1|0.12|ENSG00000243896|chr7:144259553-144259553|G/A|missense_variant	REV__OR2A7|p.L26F|1|0.12|ENSG00000243896|chr7:144259553-144259553|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	627.33389294865	2	627.333893	1252.65323	1.7549	0.0011009	1.3474	0.0008453	3.1024	0.0019462	627.3358212560987	30.198	0.16892	30.198	30.125	30.294	0	1125	52	0.9442611	0.031172097	0.9442611	382.3732	0	12.622955						203	8	3	NaN	NaN	NaN	0.5917	1	17846	17846		15.463	1.4211	1	28379	+		31432	13278	18116	18615	25084	25084					0.03701247693652476
YFLSFLGFFL	10	Unmodified						0	0	0			REV__OR2A7|p.L26F|1|0.12|ENSG00000243896|chr7:144259553-144259553|G/A|missense_variant	REV__OR2A7|p.L26F|1|0.12|ENSG00000243896|chr7:144259553-144259553|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	627.333893	1252.65323	1.7549	0.0011009	1.3474	0.0008453	3.1024	0.0019462	627.3358212560987	30.198	0.16892	30.198	30.125	30.294	0	1125	52	0.9442611	0.031172097	0.9442611	382.3732		12.622955	-0.0083712	-0.00092618	0.00075972	NaN	15.463	203	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28379	+		31433	13278	18116	18615							0.03701247693652476
YFNRFLQW	8	Unmodified	_YFNRFLQW_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6;ENST00000400595.3_1_13:21893667-21894339:+|nuORF	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.2956334554001	2	587.295633	1172.57671	1.4049	0.00082507	6.1138	0.0035906	7.5187	0.0044157	587.2990949402133	22.958	0.12056	22.945	22.896	23.017	-0.01354	1215	70	0.8891654	0.042287946	0.88764596	360.33044	0	17.136993						157	6	3	NaN	NaN	NaN	0.76633	1	15016	15016		13.737	5.4468	1	18611			31434	5752	18117	18616	25085	25085					-0.0026713108295552956
YFPDKVALL	9	Unmodified	_YFPDKVALL_					0	0	0		ENST00000467061.1_1_3:185212881-185213145:-|nuORF;ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3025928202501	2	533.302593	1064.59063	2.2794	0.0012156	-0.60431	-0.00032228	1.6751	0.00089332	533.3020903125898	26.215	0.16894	26.215	26.143	26.312	0	1239	82	0.87444305	0.04971218	0.87444305	354.78192	0	20.169373						247	8	2	NaN	NaN	NaN	0.53317	1	11343	11343		8.2448	0.65722	1	19009			31435	4269	18118	18617	25086	25086					0.060921016254724236
YFPDKVALL	9	Unmodified						0	0	0		ENST00000467061.1_1_3:185212881-185213145:-|nuORF;ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	533.302593	1064.59063	1.3083	0.00069773	-1.0685	-0.00056984	0.23981	0.00012789	533.3014894620397	26.263	0.14474	26.252	26.18	26.324	-0.011137	1239	64	0.87444305	0.038660824	0.8729236	354.78192		15.685608	0.018446	-0.00025966	-0.00075972	NaN	8.2448	184	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14672			31436	4269	18118	18617							0.060921016254724236
YFPMKLIEY	9	Unmodified	_YFPMKLIEY_					0	0	0			REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.3095605726002	2	602.309561	1202.60457	0.76543	0.00046103	-7.6034	-0.0045796	-6.838	-0.0041186	602.3050674496936	31.501	0.28963	31.501	31.404	31.694	0	1167	67	0.91857195	0.040407836	0.91857195	372.13928	0	16.37033						531	13	4	NaN	NaN	NaN	0.60063	1	16551	16551		5.4659	0.55612	1	88618	+		31437	8751	18119	18618	25087	25087					0.011370110622692664
YFPMKLIEY	9	Unmodified						0	0	0			REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.309561	1202.60457	0.76543	0.00046103	-7.6034	-0.0045796	-6.838	-0.0041186	602.3050674496936	31.501	0.28963	31.501	31.404	31.694	0	1167	67	0.91857195	0.040407836	0.91857195	372.13928		16.37033	0.014802	-0.00011078	-0.00015839	NaN	5.4659	531	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88618	+		31438	8751	18119	18618							0.011370110622692664
YFPMKLIEY	9	Unmodified						0	0	0			REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	REV__ENST00000471692.1_1_5:137527956-137534147:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.309561	1202.60457	0.47157	0.00028403	-7.3745	-0.0044417	-6.9029	-0.0041577	602.3057334830318	31.476	0.28956	31.471	31.326	31.616	-0.0044155	1164	67	0.9204082	0.040403485	0.91888875	372.8832		16.368591	-0.014802	0.00016498	0.00015839	NaN	5.4659	521	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86829	+		31439	8751	18119	18618							0.011370110622692664
YFQERQNMIE	10	Unmodified	_YFQERQNMIE_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.31389417555	2	679.313894	1356.61324	2.2652	0.0015388	-6.215	-0.0042219	-3.9498	-0.0026831	679.3095709345372	38.177	0.072102	38.18	38.156	38.228	0.0034218	1107	28	0.9552588	0.016492188	0.9537394	386.50336	0	6.6728516						47	4	2	NaN	NaN	NaN	0.71559	1	18734	18734		6.9844	0.12115	1	2706.5	+		31440	9581	18120	18619	25088	25088					-0.05080667039237596
YFQERQNMIE	10	Unmodified						0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	679.313894	1356.61324	0.89691	0.00060929	-3.9651	-0.0026935	-3.0681	-0.0020842	679.3117739396159	38.155	0.072113	38.155	38.155	38.227	0	1116	28	0.94976085	0.016495764	0.94976085	384.2788		6.674286	-0.012536	0.001366	-0.0019893	NaN	6.9844	38	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385	+		31441	9581	18120	18619							-0.05080667039237596
YFQERQNMIE	10	Unmodified						0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	679.313894	1356.61324	2.2652	0.0015388	-6.215	-0.0042219	-3.9498	-0.0026831	679.3095709345372	38.177	0.072102	38.18	38.156	38.228	0.0034218	1107	28	0.9552588	0.016492188	0.9537394	386.50336		6.6728516	0.012536	-0.0016908	0.0019893	NaN	6.9844	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2706.5	+		31442	9581	18120	18619							-0.05080667039237596
YFQISPCDEF	10	Unmodified	_YFQISPCDEF_					0	0	0			REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	REV__ENST00000587807.5_1_18:54293643-54306011:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.76571417495	2	624.765714	1247.51688	0.96366	0.00060206	1.851	0.0011565	2.8147	0.0017585	624.7673032167614	29.4	0.26543	29.393	29.32	29.586	-0.0077209	1182	64	0.9093879	0.038573205	0.90786844	368.268	0	15.620728						491	12	5	NaN	NaN	NaN	0.12158	1	16964	16964		42.995	14.099	1	135780	+		31443	12896	18121	18620	25089	25089					-0.09698234599181887
YFQLDVTL	8	Unmodified	_YFQLDVTL_					0	0	0		ENST00000432857.2_1_3:9792686-9793638:+|nuORF;nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	ENST00000432857.2_1_3:9792686-9793638:+|nuORF	ENST00000432857.2_1_3:9792686-9793638:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.5193245019001	1	998.519325	997.512048	1.3066	0.0013046	-0.44954	-0.00044888	0.85703	0.00085576	998.5190112403299	33.045	0.14482	33.045	32.997	33.142	0	174	52	1.5157272	0.03013289	1.5157272	307.75107	0	6.1181335						177	7	3	NaN	NaN	NaN	0.76633	1	8477	8477		13.737	0	1	16826			31444	1937	18122	18621	25090	25090					0.013192493203860067
YFQVQCRFH	9	Unmodified	_YFQVQCRFH_					0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.29002514875	2	614.290025	1226.5655	0.85418	0.00052472	6.9513	0.0042701	7.8054	0.0047948	614.29405906323	30.56	0.19309	30.56	30.511	30.704	0	993	136	1.0247463	0.08210641	1.0247463	415.06143	0	33.256287						586	9	4	NaN	NaN	NaN	0.67818	1	17143	17143		1.072	0.14616	1	78525	+		31445	13225	18123	18622	25091	25091					-0.038722764487602035
YFQVQCRFH	9	Unmodified						0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	614.290025	1226.5655	0.85418	0.00052472	6.9513	0.0042701	7.8054	0.0047948	614.29405906323	30.56	0.19309	30.56	30.511	30.704	0	993	136	1.0247463	0.08210641	1.0247463	415.06143		33.256287	0.003385	-8.8236E-05	-0.00015267	NaN	1.072	586	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78525	+		31446	13225	18123	18622							-0.038722764487602035
YFQVQCRFH	9	Unmodified						0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.290025	1226.5655	0.62557	0.00038428	7.0999	0.0043614	7.7254	0.0047457	614.2941337325163	30.559	0.21715	30.553	30.505	30.722	-0.0057564	990	136	1.0265712	0.08208889	1.0250517	415.80054		33.249115	-0.003385	9.4315E-05	0.00015267	NaN	1.072	587	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65545	+		31447	13225	18123	18622							-0.038722764487602035
YFRHFDMGE	9	Unmodified	_YFRHFDMGE_					0	0	0			REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.25839066935	2	601.258391	1200.50223	1.206	0.00072514	0.28453	0.00017108	1.4906	0.00089621	601.259143047402	29.16	0.21721	29.16	29.112	29.329	0	1173	88	0.91489893	0.05327928	0.91489893	370.65857	0	21.585358						313	10	3	NaN	NaN	NaN	0.44082	1	16482	16482		12.049	3.0867	1	46859	+		31448	8513	18124	18623	25092	25092					-0.09000261956657596
YFRHFDMGE	9	Unmodified						0	0	0			REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	601.258391	1200.50223	1.206	0.00072514	0.28453	0.00017108	1.4906	0.00089621	601.259143047402	29.16	0.21721	29.16	29.112	29.329	0	1173	88	0.91489893	0.05327928	0.91489893	370.65857		21.585358	-0.019894	0.00019924	0.00075972	NaN	12.049	313	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46859	+		31449	8513	18124	18623							-0.09000261956657596
YFRHFDMGE	9	Unmodified						0	0	0			REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	601.258391	1200.50223	0.79491	0.00047794	0.015295	9.1962E-06	0.8102	0.00048714	601.2589804107502	29.207	0.24133	29.2	29.127	29.368	-0.0077209	1173	82	0.91489893	0.049620926	0.9133795	370.65857		20.103241	0.019894	-0.00012452	-0.00075972	NaN	12.049	371	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57669	+		31450	8513	18124	18623							-0.09000261956657596
YFRREGVMH	9	Unmodified	_YFRREGVMH_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.7954746674001	2	597.795475	1193.5764	1.3495	0.00080674	-1.8845	-0.0011265	-0.53493	-0.00031978	597.7947644986609	26.65	0.16943	26.65	26.625	26.795	0	1173	64	0.91489893	0.03854823	0.91489893	370.683	0	15.618317						174	8	2	NaN	NaN	NaN	0.35794	1	16259	16259		15.463	0	1	57715			31451	3818	18125	18624	25093	25093					-0.012648740744680254
YFSCLTHTF	9	Unmodified	_YFSCLTHTF_					0	0	0			REV__ENST00000393493.6_1_2:99232993-99234764:+|nuORF	REV__ENST00000393493.6_1_2:99232993-99234764:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.75240983445	2	559.75241	1117.49027	1.7359	0.00097167	-8.4706	-0.0047415	-6.7347	-0.0037698	559.7473810395436	26.529	0.12068	26.529	26.529	26.65	0	1308	31	0.83204526	0.01845473	0.83204526	337.376	0	7.4830017						57	6	2	NaN	NaN	NaN	0.56671	1	13561	13561		6.8632	0.43328	1	4249.6	+		31452	9193	18126	18625	25094	25094					-0.06377878699868234
YFSCLTHTF	9	Unmodified						0	0	0			REV__ENST00000393493.6_1_2:99232993-99234764:+|nuORF	REV__ENST00000393493.6_1_2:99232993-99234764:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	559.75241	1117.49027	1.7359	0.00097167	-8.4706	-0.0047415	-6.7347	-0.0037698	559.7473810395436	26.529	0.12068	26.529	26.529	26.65	0	1308	31	0.83204526	0.01845473	0.83204526	337.376		7.4830017	0	0	0	NaN	6.8632	57	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4249.6	+		31453	9193	18126	18625							-0.06377878699868234
YFSHFIRSGN	10	Unmodified	_YFSHFIRSGN_					0	0	0		ENSG00000042832|ENST00000220616|TG;nc|ENSG00000042832|P01266-2|TG	ENSG00000042832|ENST00000220616|TG	ENSG00000042832|ENST00000220616|TG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.2989044258501	2	614.298904	1226.58326	0.28928	0.0001777	-8.0395	-0.0049387	-7.7502	-0.004761	614.7959184950779	31.115	0.12067	31.115	31.042	31.163	0	1176	79	0.9130621	0.047728956	0.9130621	369.82504	0	19.332062						307	6	3	NaN	NaN	NaN	0.74182	1	17141	17141		5.1889	0.27914	1	29731			31454	536	18127	18626	25095	25095					-0.02097237922248496
YFSHFIRSGN	10	Unmodified						0	0	0		ENSG00000042832|ENST00000220616|TG;nc|ENSG00000042832|P01266-2|TG	ENSG00000042832|ENST00000220616|TG	ENSG00000042832|ENST00000220616|TG	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	614.298904	1226.58326	0.61189	0.00037589	-5.457	-0.0033522	-4.8451	-0.0029763	614.2966967677936	31.138	0.16891	31.133	31.109	31.277	-0.0050716	1176	88	0.9130621	0.05324477	0.91154265	369.82504		21.566162	0.0090232	0.0014905	-0.00075972	NaN	5.1889	349	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59983			31455	536	18127	18626							-0.02097237922248496
YFSLFGSGSFS	11	Unmodified	_YFSLFGSGSFS_					0	0	0			REV__nc|ENSG00000180316|Q8N8W4|PNPLA1	REV__nc|ENSG00000180316|Q8N8W4|PNPLA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.7743964868001	2	599.774396	1197.53424	0.41764	0.00025049	-5.2376	-0.0031414	-4.82	-0.0028909	599.7727558674325	32.127	0.096489	32.123	32.099	32.196	-0.0037575	1209	70	0.892844	0.042278767	0.8913246	361.73355	0	17.12915						133	5	2	NaN	NaN	NaN	0.74155	1	15734	15734		4.7291	0.31598	1	13598	+		31456	10828	18128	18627	25096	25096					-0.05662571001835204
YFSLIPTGF	9	Unmodified	_YFSLIPTGF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1044.540059944	1	1044.54006	1043.53278	1.2215	0.0012759	2.1219	0.0022164	3.3434	0.0034923	1045.5463772590506	35.143	0.07243	35.143	35.119	35.191	-4.5776E-05	129	58	1.5422925	0.033627987	1.540773	312.95654	0	6.8237						102	4	3	NaN	NaN	NaN	0.12945	1	10153	10153		31.561	4.8295	1	9025.8			31457	3201	18129	18628	25097	25097					0.012758397000425248
YFSLLSVIC	9	Unmodified	_YFSLLSVIC_					0	0	0		tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	tr|U7SNG9|U7SNG9_FUSNUS-adenosylmethionineuptaketransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01752PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1044.5434307624	1	1044.54343	1043.53615	0.83206	0.00086913	0.81694	0.00085333	1.649	0.0017225	1044.5443215787845	35.144	0.14478	35.144	35.072	35.217	0	135	55	1.5387528	0.031863213	1.5387528	312.23828	0	6.465576						136	7	2	NaN	NaN	NaN	0.29681	1	10359	10359		19.118	0	1	15405			31458	13785	18130	18629	25098	25098					0.01612766482412553
YFSRTDRF	8	Unmodified	_YFSRTDRF_					0	0	0		ENST00000508798.5_1_4:99392964-99393330:-|nuORF	ENST00000508798.5_1_4:99392964-99393330:-|nuORF	ENST00000508798.5_1_4:99392964-99393330:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.2670729812	2	546.267073	1090.51959	1.6301	0.00089045	-10.706	-0.0058483	-9.076	-0.0049579	546.2611949551892	22.934	0.21696	22.921	22.824	23.041	-0.01354	1260	82	0.8615505	0.04972291	0.8600311	349.445	0	20.167603						361	10	4	NaN	NaN	NaN	0.76406	1	12112	12112		14.042	4.43	1	86545			31459	7344	18131	18630	25099	25099					-0.022045983593443452
YFSTISSSF	9	Unmodified	_YFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.4778536177	1	1038.47785	1037.47058	2.0896	0.00217	3.9671	0.0041198	6.0567	0.0062898	1038.4804472518983	26.143	0.16891	26.143	26.119	26.288	0	183	91	1.510409	0.05322385	1.510409	306.51022	0	10.800781						301	8	3	NaN	NaN	NaN	0.014046	1	10095	10095		80.639	46.2	1	32216			31460	6074	18132	18631	25100	25100					-0.04665931438944426
YFSTISSSF	9	Unmodified	_YFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1038.4778536177	1	1038.47785	1037.47058	1.7924	0.0018614	2.955	0.0030688	4.7475	0.0049301	1038.4786212883641	26.167	0.14479	26.156	26.107	26.252	-0.011135	183	88	1.510409	0.051446915	1.5088896	306.51022	0	10.440216						276	7	3	NaN	NaN	NaN	0.030391	1	9887	9887		58.599	27.038	1	28842			31461	6074	18132	18631	25101	25101					-0.04665931438944426
YFSVAGFKR	9	Unmodified	_YFSVAGFKR_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.79018393675	2	537.790184	1073.56581	1.9413	0.001044	-3.5436	-0.0019057	-1.6023	-0.00086169	537.7880985868651	28.122	0.12067	28.122	28.098	28.219	0	1221	76	0.885486	0.046029747	0.885486	359.22394	0	18.67337						137	6	3	NaN	NaN	NaN	0.53206	1	11717	11717		8.2903	1.4963	1	17356	+		31462	9091	18133	18632	25102	25102					0.03197466542746952
YFTDKAASYT	10	Unmodified	_YFTDKAASYT_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.77185379785	2	583.771854	1165.52915	2.2633	0.0013213	-2.9059	-0.0016964	-0.64254	-0.0003751	584.2709485105771	22.863	0.21684	22.863	22.838	23.055	0	1191	82	0.90387505	0.049653053	0.90387505	366.31723	0	20.123108						167	10	2	NaN	NaN	NaN	0.44258	1	15318	15318		21.835	6.6596	1	41348			31463	541	18134	18633	25103	25103					-0.046988748644935185
YFTMATFEPPN	11	Unmodified	_YFTMATFEPPN_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	659.2946387899001	2	659.294639	1316.57472	1.1107	0.00073225	-1.0233	-0.00067467	0.087335	5.758E-05	659.2945119334591	30.584	0.12069	30.584	30.535	30.656	0	1128	61	0.9424274	0.036671042	0.9424274	381.4286	0	14.841888						216	6	4	NaN	NaN	NaN	0.71564	1	19049	19049		6.4299	0	1	30010	+		31464	10591	18135	18634	25104	25104					-0.07089972673725242
YFTTVSESL	9	Unmodified	_YFTTVSESL_					0	0	0		KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B	KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5040683682	1	1046.50407	1045.49679	1.8075	0.0018915	0.49682	0.00051993	2.3043	0.0024114	1046.5049276248815	24.84	0.096518	24.84	24.816	24.912	0	156	73	1.5263584	0.042520404	1.5263584	309.71567	0	8.627869						134	5	2	NaN	NaN	NaN	0.03623	1	10436	10436		52.758	19.06	1	14026			31465	2272	18136	18635	25105	25105					-0.024136622674632235
YFVDIITWN	9	Unmodified	_YFVDIITWN_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.7951319289001	2	585.795132	1169.57571	1.7519	0.0010262	-11.556	-0.0067693	-9.8038	-0.005743	585.7890344395853	25.081	0.33777	25.069	24.924	25.262	-0.012011	1146	118	0.93142134	0.07165146	0.9299019	377.46582	0	29.037323						718	15	3	NaN	NaN	NaN	0.23112	1	14930	14930		23.334	2.8858	1	124200			31466	4268	18137	18636	25106	25106					-0.0022939024252082163
YFVDIITWN	9	Unmodified						0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.795132	1169.57571	1.8606	0.0010899	-5.292	-0.0031	-3.4315	-0.0020101	585.7939912012024	24.985	0.072409	24.985	24.936	25.009	0	1188	115	0.90571284	0.06981802	0.90571284	367.0472		28.294312	-0.042156	0.0047528	-0.012095	NaN	23.334	154	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30673			31467	4268	18137	18636							-0.0022939024252082163
YFWPPPPTM	9	Unmodified	_YFWPPPPTM_					0	0	0		ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2676957579	2	568.267696	1134.52084	2.0325	0.001155	3.5808	0.0020349	5.6134	0.0031899	568.269043169303	30.198	0.31376	30.198	30.053	30.366	0	1218	76	0.8873258	0.0460099	0.8873258	359.72516	0	18.652557						382	14	3	NaN	NaN	NaN	0.27442	1	14248	14248		20.555	2.521	1	51894			31468	4043	18138	18637	25107	25107					-0.04104100314793868
YFYDGGDNN	9	Unmodified	_YFYDGGDNN_					0	0	0		CSMD3|p.D1994Y|1|0.28|ENSG00000164796|chr8:112383618-112383618|C/A|missense_variant	CSMD3|p.D1994Y|1|0.28|ENSG00000164796|chr8:112383618-112383618|C/A|missense_variant	CSMD3|p.D1994Y|1|0.28|ENSG00000164796|chr8:112383618-112383618|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.70142850895	2	532.701429	1063.3883	0.7339	0.00039095	-9.5677	-0.0050967	-8.8338	-0.0047058	532.6976541583547	27.542	0.09656	27.533	27.508	27.605	-0.0095501	1293	37	0.84127116	0.022136092	0.8397517	341.32828	0	8.981262						128	5	4	NaN	NaN	NaN	0.47587	1	11001	11001		10.605	0.5534	1	10102			31469	231	18139	18638	25108	25108					-0.14085453517895985
YFYWGGLL	8	Unmodified	_YFYWGGLL_					0	0	0			REV__nc|ENSG00000123191|P35670-3|ATP7B	REV__nc|ENSG00000123191|P35670-3|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.75527848690007	2	509.755278	1017.496	1.3228	0.0006743	3.7762	0.0019249	5.099	0.0025992	509.7574005579359	12.508	0.16801	12.508	12.484	12.652	0	1248	46	0.8689189	0.027626812	0.8689189	352.74893	0	11.215485						176	8	3	NaN	NaN	NaN	0.71635	1	9261	9261		18.034	7.4295	1	17304	+		31470	9356	18140	18639	25109	25109					-0.012044121258554696
YFYWGGLL	8	Unmodified						0	0	0			REV__nc|ENSG00000123191|P35670-3|ATP7B	REV__nc|ENSG00000123191|P35670-3|ATP7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.755278	1017.496	1.3228	0.0006743	3.7762	0.0019249	5.099	0.0025992	509.7574005579359	12.508	0.16801	12.508	12.484	12.652	0	1248	46	0.8689189	0.027626812	0.8689189	352.74893		11.215485	-0.0085334	-0.00025021	-0.00016107	NaN	18.034	176	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17304	+		31471	9356	18140	18639							-0.012044121258554696
YFYWGGLL	8	Unmodified						0	0	0			REV__nc|ENSG00000123191|P35670-3|ATP7B	REV__nc|ENSG00000123191|P35670-3|ATP7B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.755278	1017.496	1.1595	0.00059106	4.4839	0.0022857	5.6434	0.0028767	510.258262554437	12.534	0.048078	12.525	12.501	12.549	-0.0088425	1245	37	0.87076044	0.02210027	0.869241	353.49655		8.971863	0.0085334	0.00047126	0.00016107	NaN	18.034	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6624.8	+		31472	9356	18140	18639							-0.012044121258554696
YFYWGGLLQVF	11	Unmodified	_YFYWGGLLQVF_					0	0	0			REV__nc|ENSG00000123191|P35670-3|ATP7B	REV__nc|ENSG00000123191|P35670-3|ATP7B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.8529811588	2	696.852981	1391.69141	1.4533	0.0010128	-4.3895	-0.0030588	-2.9362	-0.0020461	696.848434806665	30.173	0.072392	30.173	30.173	30.246	0	1074	40	0.9754029	0.023793817	0.9754029	394.5534	0	9.624664						101	4	3	NaN	NaN	NaN	0.72685	1	19998	19998		5.6942	0	1	6608	+		31473	9356	18141	18640	25110	25110					0.011231336083255883
YGALDFTL	8	Unmodified	_YGALDFTL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	899.4509105857002	1	899.450911	898.443634	0.85263	0.0007669	0.26103	0.00023478	1.1137	0.0010017	899.4520062445681	31.308	0.12067	31.308	31.284	31.404	0	354	49	1.4090419	0.028543234	1.4090419	286.51947	0	5.8041077						129	6	2	NaN	NaN	NaN	0.10499	1	6037	6037		63.31	27.274	1	15031			31474	7955	18142	18641	25111	25111					-0.009649952594600109
YGALDFTL	8	Unmodified	_YGALDFTL_					0	0	0		nc|ENSG00000148396|O15027-5|SEC16A;nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-5|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	899.4509105857002	1	899.450911	898.443634	1.0853	0.00097614	-1.8822	-0.001693	-0.79696	-0.00071682	899.4493108039726	31.307	0.14478	31.302	31.253	31.398	-0.0050716	354	49	1.4090419	0.028537154	1.4075224	286.51947	0	5.8028564						136	7	2	NaN	NaN	NaN	0.27293	1	5925	5925		44.247	15.58	1	15630			31475	7955	18142	18641	25112	25112					-0.009649952594600109
YGAPEDWEL	9	Unmodified	_YGAPEDWEL_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.4680172129	1	1079.46802	1078.46074	1.2165	0.0013132	1.4863	0.0016044	2.7028	0.0029176	1079.4700645177898	27.374	0.2414	27.374	27.326	27.567	0	219	73	1.4891195	0.042587996	1.4891195	302.03915	0	8.638184						270	11	3	NaN	NaN	NaN	0.04947	1	11893	11893		47.136	7.677	1	22651			31476	7159	18143	18642	25113	25113					-0.0753511944433285
YGAPEDWEL	9	Unmodified	_YGAPEDWEL_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.4680172129	1	1079.46802	1078.46074	1.5384	0.0016607	-1.2556	-0.0013554	0.28283	0.0003053	1079.4666718088993	27.397	0.2172	27.387	27.339	27.556	-0.010126	219	79	1.4891195	0.046132088	1.4876001	302.03918	0	9.356995						252	10	3	NaN	NaN	NaN	0.0081087	1	11587	11587		96.245	58.943	1	21952			31477	7159	18143	18642	25114	25114					-0.0753511944433285
YGARDWAL	8	Unmodified	_YGARDWAL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	476.2377842255	2	476.237784	950.461016	1.4027	0.00066801	-0.15518	-7.3904E-05	1.2475	0.0005941	476.2376634266599	21.488	0.14464	21.488	21.44	21.585	0	1311	40	0.83019954	0.023995101	0.83019954	337.34732	0	9.750275						134	7	3	NaN	NaN	NaN	0.71739	1	7095	7095		17.97	2.9568	1	18117			31478	1327	18144	18643	25115	25115					-0.01619654933813308
YGARDWAL	8	Unmodified	_YGARDWAL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	476.2377842255	2	476.237784	950.461016	1.1338	0.00053994	0.367	0.00017478	1.5008	0.00071472	476.2380446812982	21.489	0.096428	21.475	21.45	21.547	-0.014006	1311	40	0.83019954	0.023997664	0.8286801	337.34732	0	9.751343						122	5	3	NaN	NaN	NaN	0.7612	1	6964	6964		14.425	2.6862	1	18967			31479	1327	18144	18643	25116	25116					-0.01619654933813308
YGCALQKFFF	10	Unmodified	_YGCALQKFFF_					0	0	0		OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.2995272025499	2	612.299527	1222.5845	0.41075	0.0002515	-10.199	-0.0062449	-9.7884	-0.0059934	612.2929971348304	37.41	0.1683	37.41	37.314	37.482	0	1137	64	0.9369253	0.03854406	0.9369253	379.50436	0	15.612396						192	8	3	NaN	NaN	NaN	0.61246	1	17038	17038		14.042	1.0388	1	11233			31480	8082	18145	18644	25117	25117					-0.017887398777247654
YGCALQKFFF	10	Unmodified						0	0	0		OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	OR5AS1|p.M101K|1|0.2|ENSG00000181785|chr11:56030720-56030720|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.299527	1222.5845	0.95819	0.0005867	-11.399	-0.0069798	-10.441	-0.0063931	612.2928199301956	37.359	0.048191	37.362	37.314	37.362	0.0028229	1131	61	0.94059354	0.03669876	0.93907416	380.99023		14.864929	-0.023853	-0.0008553	0.0010744	NaN	14.042	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4592.6			31481	8082	18145	18644							-0.017887398777247654
YGCGGCCN	8	Unmodified	_YGCGGCCN_					0	0	0			REV__ENSG00000187026|ENST00000333892|KRTAP21-2	REV__ENSG00000187026|ENST00000333892|KRTAP21-2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	776.2160417425999	1	776.216042	775.208765	2.8001	0.0021735	-5.3326	-0.0041393	-2.5325	-0.0019658	776.2124302861434	13.781	0.047956	13.77	13.746	13.794	-0.010672	1164	34	0.9204082	0.020191908	0.91888875	187.60722	0	4.115738						40	3	2	NaN	NaN	NaN	0.84945	1	4354	4354		0	0	1	2029.2	+		31482	11019	18146	18645	25118	25118					-0.18783075602709687
YGCSCATG	8	Unmodified	_YGCSCATG_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	761.2592867658	1	761.259287	760.25201	1.352	0.0010292	1.2772	0.00097229	2.6292	0.0020015	761.260188055959	32.344	0.14481	32.341	32.292	32.437	-0.0037613	606	40	1.2585332	0.023398757	1.2570138	256.61517	0	4.7710114						97	7	2	NaN	NaN	NaN	0.84727	1	4139	4139		1.2418	0.91196	1	6002.1			31483	2250	18147	18646	25119	25119					-0.1377056255377056
YGDNSDPAL	9	Unmodified	_YGDNSDPAL_					0	0	0		nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	951.4054169560999	1	951.405417	950.39814	2.2336	0.0021251	0.25933	0.00024673	2.4929	0.0023718	951.4057158846639	18.7	0.11992	18.7	18.652	18.772	0	339	46	1.4179583	0.02674365	1.4179583	288.0947	0	5.433655						103	6	2	NaN	NaN	NaN	0.01966	1	7089	7089		72.428	36.392	1	9805.8			31484	257	18148	18647	25120	25120					-0.07904265512536313
YGDNSDPAL	9	Unmodified	_YGDNSDPAL_					0	0	0		nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	951.4054169560999	1	951.405417	950.39814	1.838	0.0017487	3.0989	0.0029483	4.9369	0.004697	951.4083340490007	18.698	0.192	18.684	18.636	18.828	-0.014059	339	52	1.4179583	0.030309439	1.4164388	288.09467	0	6.158142						174	9	2	NaN	NaN	NaN	0.04743	1	6959	6959		48.002	23.44	1	16840			31485	257	18148	18647	25121	25121					-0.07904265512536313
YGDSLVVLV	9	Unmodified	_YGDSLVVLV_					0	0	0		nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	nc|ENSG00000148110|Q5SR56-2|MFSD14B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.5349745661001	1	964.534975	963.527698	0.91404	0.00088162	-0.67429	-0.00065037	0.23975	0.00023125	964.5339288404672	31.018	0.09656	31.018	30.97	31.066	0	258	46	1.4660252	0.026664138	1.4660252	297.80273	0	5.416443						113	5	3	NaN	NaN	NaN	0.39244	1	7444	7444		14.042	0	1	11845			31486	3615	18149	18648	25122	25122					0.044475358374370444
YGDSLVVVL	9	Unmodified	_YGDSLVVVL_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.5349745661	1	964.534975	963.527698	1.1889	0.0011467	-0.88156	-0.0008503	0.3073	0.0002964	964.5334976405841	30.993	0.072393	30.988	30.964	31.036	-0.0050716	255	49	1.4678029	0.028437257	1.4662834	298.16385	0	5.776642						119	4	3	NaN	NaN	NaN	0.062072	1	7291	7291		41.785	12.186	1	14272			31487	3933	18150	18649	25123	25123					0.04447535837425676
YGDSSLGVN	9	Unmodified	_YGDSSLGVN_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	456.2088894003	2	456.208889	910.403226	1.53	0.00069801	6.1053	0.0027853	7.6353	0.0034833	456.21194005987996	30.053	0.048321	30.053	30.053	30.101	0	1365	40	0.7969414	0.024047077	0.7969414	324.03607	0	9.777527						42	3	2	NaN	NaN	NaN	0.55027	1	6229	6229		7.5404	0.67717	1	2865.1	+		31488	8611	18151	18650	25124	25124					-0.0555596164989538
YGEVAGLL	8	Unmodified	_YGEVAGLL_					0	0	0		ENST00000585044.5_1_17:80407631-80407799:-|nuORF	ENST00000585044.5_1_17:80407631-80407799:-|nuORF	ENST00000585044.5_1_17:80407631-80407799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	821.4403458994001	1	821.440346	820.433069	2.2408	0.0018407	-0.71963	-0.00059113	1.5212	0.0012496	821.4394185884258	25.901	0.16893	25.89	25.817	25.986	-0.0116	477	58	1.3357477	0.03404522	1.3342283	272.00488	0	6.9328003						118	8	2	NaN	NaN	NaN	0.62311	1	4918	4918		23.85	0	1	13134			31489	7692	18152	18651	25125	25125					0.01567022086101133
YGGAEKSA	8	Unmodified	_YGGAEKSA_					0	0	0		nc|ENSG00000148204|Q5IJ48-2|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	782.3679092378001	1	782.367909	781.360633	1.3971	0.001093	4.4006	0.0034429	5.7976	0.0045359	782.3712399546481	28.725	0.072407	28.716	28.668	28.74	-0.0083504	573	94	1.2783196	0.05568397	1.2768002	260.52475	0	11.348541						131	4	2	NaN	NaN	NaN	0.8439	1	4424	4424		3.1533	0	1	11903			31490	7954	18153	18652	25126	25126					-0.038793119874753756
YGGAEKSA	8	Unmodified						0	0	0		nc|ENSG00000148204|Q5IJ48-2|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	nc|ENSG00000148204|Q5IJ48-2|CRB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	782.367909	781.360633	1.7387	0.0013603	3.3935	0.002655	5.1323	0.0040153	782.3702844386361	28.725	0.072399	28.725	28.701	28.774	0	576	46	1.2765218	0.02696693	1.2765218	260.15836		5.4959106	0.0045524	-0.00050633	-0.00013918	NaN	3.1533	76	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5480.8			31491	7954	18153	18652							-0.038793119874753756
YGGFGWSF	8	Unmodified	_YGGFGWSF_					0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.3937300578	1	920.39373	919.386454	1.7042	0.0015685	-2.2901	-0.0021078	-0.58597	-0.00053933	920.3924053676492	28.797	0.096525	28.789	28.765	28.861	-0.0083504	318	40	1.4304334	0.02316308	1.428914	290.76935	0	4.708435						62	5	2	NaN	NaN	NaN	0.80071	1	6261	6261		9.1232	4.2135	1	3530.4	+		31492	10799	18154	18653	25127	25127					-0.07646417745195322
YGGGFGGG	8	Unmodified	_YGGGFGGG_					0	0	0		nc|ENSG00000171401|P13646-2|KRT13;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;CON__P02535-1;ENSG00000186442|ENST00000417996|KRT3;CON__P12035	REV__CON__Q6IFZ6;REV__ENSG00000171403|ENST00000246662|KRT9;ENSG00000185069|ENST00000332411|KRT76;CON__P02535-1;ENSG00000186442|ENST00000417996|KRT3	ENSG00000186442|ENST00000417996|KRT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	671.2783659490002	1	671.278366	670.271089	0.59418	0.00039886	7.9039	0.0053057	8.4981	0.0057046	671.2837902067413	31.982	0.096519	31.979	31.882	31.979	-0.0037594	1116	94	0.94976085	0.056806445	0.9482414	194.1165	0	11.610367						157	5	2	NaN	NaN	NaN	0.84876	1	2511	2511		0.39566	0	1	12263		+	31493	8282;188;197;8267;204	18155	18654	25128	25128					-0.0772352187617571
YGGGFGGGG	9	Unmodified	_YGGGFGGGG_					0	0	0		CON__P02535-1	REV__CON__Q6IFZ6;CON__P02535-1	CON__P02535-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	728.2998296726003	1	728.29983	727.292553	0.69219	0.00050412	1.2984	0.0009456	1.9906	0.0014497	728.3013663737205	34.999	0.16879	34.999	34.951	35.12	0	621	58	1.2495319	0.034212828	1.2495319	254.9843	0	6.981613						144	8	2	NaN	NaN	NaN	0.6907	1	3726	3726		0	0	1	10106		+	31494	8282;188	18156	18655	25129	25129					-0.08200136847449357
YGGGGCSG	8	Unmodified	_YGGGGCSG_					0	0	0			REV__ENST00000432375.1_1_6:32293532-32293889:+|nuORF	REV__ENST00000432375.1_1_6:32293532-32293889:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.2297011969001	1	657.229701	656.222425	1.895	0.0012454	1.7633	0.0011589	3.6583	0.0024043	657.2308140579959	25.901	0.16894	25.89	25.793	25.962	-0.0116	792	103	1.1465741	0.061594486	1.1450547	234.44246	0	12.594345						270	8	2	NaN	NaN	NaN	0.84876	1	2106	2106		0.39566	0	1	33587	+		31495	9772	18157	18656	25130	25130					-0.11943758507584334
YGGGGSAA	8	Unmodified	_YGGGGSAA_					0	0	0		nc|ENSG00000107807|P31314-2|TLX1;ENSG00000107807|ENST00000370196|TLX1	nc|ENSG00000107807|P31314-2|TLX1	nc|ENSG00000107807|P31314-2|TLX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.2732805710999	1	639.273281	638.266004	1.7551	0.001122	-3.8092	-0.0024351	-2.0541	-0.0013131	639.2707132387135	34.493	0.19304	34.493	34.421	34.614	0	1152	52	0.92775106	0.031202316	0.92775106	189.80814	0	6.383667						141	9	2	NaN	NaN	NaN	0.84887	1	1693	1693		0.32989	0	1	11965			31496	1646	18158	18657	25131	25131					-0.06759825738822656
YGGGKGGI	8	Unmodified	_YGGGKGGI_					0	0	0		tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073001	1	708.367515	707.360239	0.41089	0.00029106	5.8989	0.0041786	6.3098	0.0044697	708.3711077361584	33.744	0.24133	33.742	33.645	33.887	-0.0018463	717	115	1.1918083	0.06864941	1.1902889	243.33171	0	14.016159						372	11	3	NaN	NaN	NaN	0.84876	1	3295	3295		0.39566	0	1	31945			31497	13741	18159	18658	25132	25132					-0.005146869166651413
YGGGKGGI	8	Unmodified	_YGGGKGGI_					0	0	0		tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	tr|U7SIW4|U7SIW4_FUSNUGlutamatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02256PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.3675153073001	1	708.367515	707.360239	0.71216	0.00050447	7.1097	0.0050362	7.8218	0.0055407	708.3718813699189	35.143	0.24136	35.143	35.07	35.312	-4.5776E-05	714	103	1.1936152	0.061383605	1.1920958	243.7006	0	12.532715						257	11	2	NaN	NaN	NaN	0.84887	1	3298	3298		0.32989	0	1	27423			31498	13741	18159	18658	25133	25133					-0.005146869166651413
YGGPATYP	8	Unmodified	_YGGPATYP_					0	0	0			REV__ENSG00000149922|ENST00000395224|TBX6	REV__ENSG00000149922|ENST00000395224|TBX6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	413.1925110546	2	413.192511	824.370469	1.7162	0.00070911	-1.1398	-0.00047097	0.57633	0.00023813	413.19227820071643	29.522	0.33791	29.522	29.449	29.787	0	1383	97	0.7858409	0.05927956	0.7858409	320.01773	0	24.14038						649	15	5	NaN	NaN	NaN	0.84207	1	5077	5077		3.5732	0.41988	1	282260	+		31499	10002	18160	18659	25134	25134					-0.04874123982085621
YGGPATYP	8	Unmodified						0	0	0			REV__ENSG00000149922|ENST00000395224|TBX6	REV__ENSG00000149922|ENST00000395224|TBX6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	413.192511	824.370469	1.7162	0.00070911	-1.1398	-0.00047097	0.57633	0.00023813	413.19227820071643	29.522	0.33791	29.522	29.449	29.787	0	1383	97	0.7858409	0.05927956	0.7858409	320.01773		24.14038	-0.032241	-0.00042523	0.0016851	NaN	3.5732	649	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282260	+		31500	10002	18160	18659							-0.04874123982085621
YGGPATYP	8	Unmodified						0	0	0			REV__ENSG00000149922|ENST00000395224|TBX6	REV__ENSG00000149922|ENST00000395224|TBX6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	413.192511	824.370469	1.3759	0.0005685	-0.35804	-0.00014794	1.0178	0.00042056	413.19253344048974	29.593	0.4343	29.586	29.49	29.924	-0.0070667	1386	94	0.78399014	0.05742395	0.7824707	319.264		23.384735	0.032241	0.00022084	-0.0016851	NaN	3.5732	987	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358370	+		31501	10002	18160	18659							-0.04874123982085621
YGHNCSQACAC	11	Unmodified	_YGHNCSQACAC_					0	0	0		ENSG00000162591|ENST00000356575|MEGF6	ENSG00000162591|ENST00000356575|MEGF6	ENSG00000162591|ENST00000356575|MEGF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	386.1371375293	3	386.137138	1155.38958	1.2587	0.00048604	-9.5395	-0.0036836	-8.2808	-0.0031975	386.467941632615	24.237	0.16891	24.237	24.213	24.381	0	1494	67	0.7172283	0.040869772	0.7172283	436.0515	0	24.847504						444	8	6	NaN	NaN	NaN	0.76251	1	14988	14988		3.3044	0.092824	1	61978			31502	4148	18161	18660	25135	25135					-0.18189602016650497
YGHRGSGS	8	Unmodified	_YGHRGSGS_					0	0	0		ENSG00000197915|ENST00000368801|HRNR;CON__Q86YZ3	ENSG00000197915|ENST00000368801|HRNR	ENSG00000197915|ENST00000368801|HRNR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	820.3696405723002	1	820.369641	819.362364	2.0635	0.0016929	-9.8409	-0.0080732	-7.7774	-0.0063803	820.361128102677	26.674	0.048271	26.674	26.65	26.698	0	504	37	1.3196158	0.021519542	1.3196158	268.72568	0	4.382202						53	3	2	NaN	NaN	NaN	0.72043	1	5008	5008		17.78	4.0433	1	3474.7		+	31503	223	18162	18661	25136	25136					-0.05454258178838245
YGIIALVLI	9	Unmodified	_YGIIALVLI_					0	0	0		tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.6284810208	1	974.628481	973.621205	1.3982	0.0013627	2.4476	0.0023855	3.8458	0.0037482	974.6310442114616	40.08	0.048058	40.08	40.056	40.104	0	156	31	1.5263584	0.017714858	1.5263584	310.01324	0	3.5980225						41	3	2	NaN	NaN	NaN	0.26823	1	7721	7721		20.952	5.9396	1	2098.3			31504	13769	18163	18662	25137	25137					0.13333880010509347
YGIIALVLI	9	Unmodified						0	0	0		tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	tr|U7SLU6|U7SLU6_FUSNUSimplesugartransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01897PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	974.628481	973.621205	2.1643	0.0021094	0.37517	0.00036566	2.5395	0.0024751	974.6286053316446	40.174	0.096214	40.18	40.108	40.204	0.0060463	156	34	1.5263584	0.019481182	1.5248389	310.01324		3.9567566	0.05021	-0.00088901	-0.00075972	NaN	20.952	57	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2747.4			31505	13769	18163	18662							0.13333880010509347
YGIKCDKRCP	10	Unmodified	_YGIKCDKRCP_					0	0	0		nc|ENSG00000145794|Q96KG7-2|MEGF10;ENSG00000145794|ENST00000503335|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	nc|ENSG00000145794|Q96KG7-2|MEGF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.8634544105	3	394.863454	1181.56853	1.4316	0.0005653	7.1012	0.002804	8.5328	0.0033693	394.8665133683492	19.298	0.19226	19.284	19.236	19.428	-0.014141	1470	49	0.7320868	0.029707372	0.73056734	444.96878	0	18.056366						140	9	2	NaN	NaN	NaN	0.41164	1	15286	15286		14.45	7.1602	1	21984			31506	3533	18164	18663	25138	25138					-0.014987693862622109
YGIMTGAFYS	10	Unmodified	_YGIMTGAFYS_					0	0	0		ENST00000474693.1_1_1:213037797-213058739:+|nuORF;nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1;ENSG00000162769|ENST00000366971|FLVCR1	ENST00000474693.1_1_1:213037797-213058739:+|nuORF	ENST00000474693.1_1_1:213037797-213058739:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.2522426589501	2	555.252243	1108.48993	0.73205	0.00040647	-3.8291	-0.0021261	-3.0971	-0.0017196	555.2498617694987	31.646	0.12068	31.646	31.621	31.742	0	1260	64	0.8615505	0.03869009	0.8615505	349.37427	0	15.689545						309	6	4	NaN	NaN	NaN	0.67523	1	13209	13209		9.746	0	1	52808			31507	4176	18165	18664	25139	25139					-0.05997298419697472
YGKGGGTV	8	Unmodified	_YGKGGGTV_					0	0	0		ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	ENST00000569839.1_1_16:57608733-57625590:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	738.3780799936001	1	738.37808	737.370804	0.77138	0.00056957	6.2204	0.004593	6.9917	0.0051625	738.3816906166811	31.621	0.12068	31.621	31.573	31.694	0	570	52	1.2801172	0.030559182	1.2801172	261.1596	0	6.234436						134	6	2	NaN	NaN	NaN	0.84692	1	3877	3877		1.4396	0	1	10960			31508	7642	18166	18665	25140	25140					-0.00838704262241663
YGKRYLYFFAF	11	Unmodified	_YGKRYLYFFAF_					0	0	0			REV__ENST00000468037.1_1_6:31660724-31670409:-|nuORF	REV__ENST00000468037.1_1_6:31660724-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.8795302603	2	737.87953	1473.74451	1.3679	0.0010094	-5.8075	-0.0042852	-4.4396	-0.0032759	737.875973374505	29.618	0.12066	29.618	29.594	29.715	0	1002	52	1.0192708	0.031044662	1.0192708	412.0722	0	12.550781						121	6	2	NaN	NaN	NaN	0.64343	1	20493	20493		11.17	4.7404	1	11767	+		31509	11239	18167	18666	25141	25141					0.026585113909732172
YGKRYLYFFAF	11	Unmodified						0	0	0			REV__ENST00000468037.1_1_6:31660724-31670409:-|nuORF	REV__ENST00000468037.1_1_6:31660724-31670409:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	737.87953	1473.74451	1.3679	0.0010094	-5.8075	-0.0042852	-4.4396	-0.0032759	737.875973374505	29.618	0.12066	29.618	29.594	29.715	0	1002	52	1.0192708	0.031044662	1.0192708	412.0722		12.550781	-0.04429	6.1231E-05	0.00075972	NaN	11.17	121	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11767	+		31510	11239	18167	18666							0.026585113909732172
YGKYSTDL	8	Unmodified	_YGKYSTDL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	946.4516388672001	1	946.451639	945.444362	1.7962	0.0017	-1.1713	-0.0011086	0.62494	0.00059148	946.4513257400589	54.5	0.024071	54.5	54.5	54.524	0	294	40	1.4446791	0.023140907	1.4446791	293.5457	0	4.7020264						46	2	2	NaN	NaN	NaN	0.84692	1	6948	6948		1.4396	0	1	4275.4	+		31511	9503	18168	18667	25142	25142					-0.030542006104155917
YGLEKFWAF	9	Unmodified	_YGLEKFWAF_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.7923922747	2	580.792392	1159.57023	2.0216	0.0011741	-3.768	-0.0021884	-1.7464	-0.0010143	580.7897914514001	30.173	0.21719	30.173	30.125	30.342	0	1215	79	0.8891654	0.04783213	0.8891654	360.37747	0	19.386322						276	10	2	NaN	NaN	NaN	0.012861	1	15122	15122		84.233	57.501	1	48343			31512	3876	18169	18668	25143	25143					-0.0031706903434951528
YGLEKFWAF	9	Unmodified	_YGLEKFWAF_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7923922747	2	580.792392	1159.57023	1.1296	0.00065608	-3.2378	-0.0018805	-2.1082	-0.0012244	580.7900664385292	30.197	0.2413	30.19	30.094	30.335	-0.0064106	1212	70	0.8910048	0.042306185	0.88948536	361.123	0	17.146637						331	11	3	NaN	NaN	NaN	0.054111	1	14617	14617		45.165	27.195	1	42757			31513	3876	18169	18668	25144	25144					-0.0031706903434951528
YGLGLGSQQ	9	Unmodified	_YGLGLGSQQ_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	922.4628722555001	1	922.462872	921.455596	1.1851	0.0010932	-3.6431	-0.0033606	-2.458	-0.0022674	922.4599943057013	27.566	0.096521	27.557	27.557	27.653	-0.009552	342	49	1.4161754	0.028528094	1.4146559	287.86154	0	5.7987976						79	5	2	NaN	NaN	NaN	0.46215	1	6313	6313		11.17	0.079644	1	6145.4			31514	3307	18170	18669	25145	25145					-0.008273785162828062
YGPISSRPHI	10	Unmodified	_YGPISSRPHI_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.80382262825	2	563.803823	1125.59309	1.173	0.00066132	-4.3016	-0.0024252	-3.1286	-0.0017639	563.8021627648119	24.671	0.14467	24.658	24.61	24.755	-0.012392	1206	64	0.894683	0.038610697	0.89316356	362.74237	0	15.654419						203	7	4	NaN	NaN	NaN	0.65442	1	13485	13485		11.17	1.5587	1	30920	+		31515	9220	18171	18670	25146	25146					0.035319500831292316
YGPISSRPHI	10	Unmodified						0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.803823	1125.59309	1.173	0.00066132	-4.3016	-0.0024252	-3.1286	-0.0017639	563.8021627648119	24.671	0.14467	24.658	24.61	24.755	-0.012392	1206	64	0.894683	0.038610697	0.89316356	362.74237		15.654419	-0.0062504	0.0010714	-0.00075972	NaN	11.17	203	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30920	+		31516	9220	18171	18670							0.035319500831292316
YGRDLVGYAYP	11	Unmodified	_YGRDLVGYAYP_					0	0	0			REV__ENSG00000222028|ENST00000408907|PSMB11	REV__ENSG00000222028|ENST00000408907|PSMB11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3142201390501	2	637.31422	1272.61389	1.5989	0.001019	-6.6691	-0.0042503	-5.0702	-0.0032313	637.309839288639	20.598	0.1205	20.584	20.535	20.656	-0.014088	1152	49	0.92775106	0.029365301	0.9262317	375.62335	0	11.889282						91	6	2	NaN	NaN	NaN	0.73455	1	17460	17460		5.1889	1.6191	1	8638.4	+		31517	11306	18172	18671	25147	25147					-0.011515043278450321
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.8138559983001	2	577.813856	1153.61316	1.3069	0.00075516	-0.42883	-0.00024779	0.87809	0.00050737	577.8138467396927	26.866	0.24133	26.856	26.759	27.001	-0.010645	1191	64	0.90387505	0.038602352	0.9023556	366.36148	0	15.646423						393	11	5	NaN	NaN	NaN	0.040041	1	14448	14448		55.413	0	1	129260			31518	3531	18173	18672	25148	25148					0.04249701023104535
YGRIEILSGF	10	Unmodified						0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	577.813856	1153.61316	1.7104	0.00098829	-0.44891	-0.00025939	1.2615	0.0007289	577.8137994947812	26.819	0.16892	26.819	26.795	26.964	0	1194	61	0.902037	0.036762178	0.902037	365.6165		14.900543	-0.018408	-1.0884E-05	-0.00015929	NaN	55.413	351	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135320			31519	3531	18173	18672							0.04249701023104535
YGSGFGGY	8	Unmodified	_YGSGFGGY_					0	0	0		ENSG00000186977|ENST00000334151|KRTAP19-5;CON__Q3LI72;ENSG00000244025|ENST00000334063|KRTAP19-3;ENSG00000184351|ENST00000390689|KRTAP19-1	ENSG00000186977|ENST00000334151|KRTAP19-5	ENSG00000186977|ENST00000334151|KRTAP19-5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.1690359583	2	404.169036	806.323519	0.95608	0.00038642	2.289	0.00092515	3.2451	0.0013116	404.17029756656865	29.377	0.096512	29.377	29.353	29.449	0	1446	37	0.7469324	0.022256374	0.7469324	304.2843	0	9.066742						74	5	2	NaN	NaN	NaN	0.84692	1	4836	4836		1.4396	0	1	6926.6		+	31520	215	18174	18673	25149	25149					-0.08738983533226019
YGSGFGGY	8	Unmodified						0	0	0		ENSG00000186977|ENST00000334151|KRTAP19-5;CON__Q3LI72;ENSG00000244025|ENST00000334063|KRTAP19-3;ENSG00000184351|ENST00000390689|KRTAP19-1	ENSG00000186977|ENST00000334151|KRTAP19-5	ENSG00000186977|ENST00000334151|KRTAP19-5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	404.169036	806.323519	1.349	0.00054523	-0.086752	-3.5063E-05	1.2623	0.00051017	404.1687755557056	29.449	0.048267	29.442	29.417	29.466	-0.0070667	1446	37	0.7469324	0.022258759	0.74541295	304.28433		9.067749	0.032275	-0.0011424	-0.00075972	NaN	1.4396	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5086.2		+	31521	215	18174	18673							-0.08738983533226019
YGSGNYNDF	9	Unmodified	_YGSGNYNDF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1036.4006659292	1	1036.40067	1035.39339	1.8229	0.0018893	-0.48601	-0.0005037	1.3369	0.0013856	1037.4027025857524	19.636	0.096025	19.636	19.588	19.684	0	276	43	1.4553556	0.024901152	1.4553556	295.34592	0	5.0533752						87	5	2	NaN	NaN	NaN	0.054111	1	9994	9994		45.165	20.204	1	5600.5			31522	2329	18175	18674	25150	25150					-0.12289149655271103
YGSGNYNDF	9	Unmodified						0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1036.40067	1035.39339	1.5903	0.0016482	-1.1493	-0.0011911	0.44103	0.00045709	1036.3992007228157	19.611	0.14437	19.597	19.573	19.717	-0.014141	276	40	1.4553556	0.023123741	1.4538362	295.34592		4.6926575	-0.019701	-0.00038126	-0.00075972	NaN	45.165	116	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8190.4			31523	2329	18175	18674							-0.12289149655271103
YGSKSNILRF	10	Unmodified	_YGSKSNILRF_					0	0	0		ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.8247550356	2	592.824755	1183.63496	1.2216	0.0007242	0.26232	0.00015551	1.4839	0.0008797	592.825091197646	40.967	0.072063	40.974	40.95	41.022	0.0074959	1161	28	0.9222442	0.016524255	0.92072475	373.69492	0	6.695648						47	4	2	NaN	NaN	NaN	0.71559	1	15366	15366		6.9844	0.12115	1	3462.8			31524	5319	18176	18675	25151	25151					0.05048505771651435
YGSSSGAL	8	Unmodified	_YGSSSGAL_					0	0	0		nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3413601363001	1	741.34136	740.334084	1.0948	0.0008116	4.8453	0.003592	5.9401	0.0044036	741.3449804088899	30.801	0.21715	30.801	30.753	30.97	0	573	121	1.2783196	0.07198477	1.2783196	260.77383	0	14.684708						323	10	2	NaN	NaN	NaN	0.75682	1	3909	3909		15.013	1.2758	1	75123			31525	1229	18177	18676	25152	25152					-0.0464700087879919
YGTDAIIYL	9	Unmodified	_YGTDAIIYL_					0	0	0		ENST00000473796.1_1_7:95214955-95221973:-|nuORF;ENSG00000004799|ENST00000005178|PDK4;ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1028.5298891881998	1	1028.52989	1027.52261	1.7804	0.0018312	-0.41472	-0.00042655	1.3657	0.0014046	1028.5303647407125	30.366	0.12067	30.366	30.318	30.439	0	159	70	1.5245869	0.04074216	1.5245869	309.4267	0	8.268951						244	6	3	NaN	NaN	NaN	0.056143	1	9670	9670		44.302	17.571	1	29184			31526	310	18178	18677	25153	25153					0.009952319747981164
YGTDAIIYL	9	Unmodified	_YGTDAIIYL_					0	0	0		ENST00000473796.1_1_7:95214955-95221973:-|nuORF;ENSG00000004799|ENST00000005178|PDK4;ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	ENST00000473796.1_1_7:95214955-95221973:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1028.5298891881998	1	1028.52989	1027.52261	1.0048	0.0010335	0.90983	0.00093579	1.9147	0.0019693	1028.5308010729714	30.366	0.16889	30.359	30.287	30.456	-0.0064106	153	70	1.5281296	0.04074216	1.5266101	310.1457	0	8.268951						304	8	3	NaN	NaN	NaN	0.094712	1	9480	9480		36.586	9.8549	1	31876			31527	310	18178	18677	25154	25154					0.009952319747981164
YGTVAFAQMV	10	Unmodified	_YGTVAFAQMV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.76805989865	2	543.76806	1085.52157	1.3234	0.00071961	-1.8669	-0.0010151	-0.54348	-0.00029553	543.7674785756633	28.967	0.14483	28.967	28.943	29.087	0	1242	37	0.87260187	0.022097886	0.87260187	353.9477	0	8.963409						112	7	3	NaN	NaN	NaN	0.38071	1	12196	12196		24.4	1.0658	1	12418			31528	4306	18179	18678	25155	25155					-0.017773056657460984
YGVAGSKE	8	Unmodified	_YGVAGSKE_					0	0	0		nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-2|NRCAM	nc|ENSG00000091129|Q92823-2|NRCAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	810.3992093662	1	810.399209	809.391933	2.0094	0.0016284	5.3535	0.0043385	7.363	0.005967	810.403695782619	27.905	0.072401	27.905	27.857	27.929	0	468	58	1.3411216	0.034030676	1.3411216	273.1605	0	6.9313965						134	4	3	NaN	NaN	NaN	0.73961	1	4880	4880		16.584	3.5813	1	13132			31529	1072	18180	18679	25156	25156					-0.020387389533880196
YGVAGSKE	8	Unmodified						0	0	0		nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-2|NRCAM	nc|ENSG00000091129|Q92823-2|NRCAM	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	810.399209	809.391933	1.3224	0.0010717	6.1352	0.0049719	7.4576	0.0060436	810.4043372994101	27.928	0.096504	27.919	27.87	27.967	-0.009552	462	61	1.3447032	0.035819888	1.3431838	273.88998		7.2958374	0.0069123	0.00042541	0.0010311	NaN	16.584	142	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14519			31530	1072	18180	18679							-0.020387389533880196
YGVGAGGF	8	Unmodified	_YGVGAGGF_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.3409662058002	1	727.340966	726.33369	1.1118	0.00080865	1.0145	0.00073789	2.1263	0.0015465	727.3416023276798	37.504	0.1205	37.506	37.482	37.603	0.0028229	669	85	1.2206948	0.050513506	1.2191753	249.10579	0	10.308212						177	6	2	NaN	NaN	NaN	0.84876	1	3624	3624		0.39566	0	1	14692			31531	566	18181	18680	25157	25157					-0.04042375807989629
YGVSLLLS	8	Unmodified	_YGVSLLLS_					0	0	0			REV__ENSG00000243660|ENST00000437590|ZNF487	REV__ENSG00000243660|ENST00000437590|ZNF487	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4872960920003	1	851.487296	850.48002	1.2083	0.0010289	-0.47032	-0.00040047	0.73802	0.00062841	851.4880018378906	35.723	0.12062	35.723	35.675	35.795	0	516	61	1.3124412	0.035877228	1.3124412	267.1033	0	7.301605						170	6	3	NaN	NaN	NaN	0.84876	1	5395	5395		0.39566	0	1	12171	+		31532	11350	18182	18681	25158	25158					0.048798816372595866
YHCGDGSATSI	11	Unmodified	_YHCGDGSATSI_					0	0	0			REV__GNAS|p.R356C|1|0.21|ENSG00000087460|chr20:58910710-58910710|C/T|missense_variant	REV__GNAS|p.R356C|1|0.21|ENSG00000087460|chr20:58910710-58910710|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.72966301965	2	555.729663	1109.44477	1.5405	0.00085608	7.5269	0.0041829	9.0673	0.005039	555.7339446471158	15.87	0.19186	15.87	15.75	15.942	0	1314	94	0.8283535	0.057181895	0.8283535	335.9087	0	23.18805						401	9	3	NaN	NaN	NaN	0.29515	1	13242	13242		25.801	1.2389	1	67750	+		31533	12999	18183	18682	25159	25159					-0.1055714895287565
YHCGDGSATSI	11	Unmodified						0	0	0			REV__GNAS|p.R356C|1|0.21|ENSG00000087460|chr20:58910710-58910710|C/T|missense_variant	REV__GNAS|p.R356C|1|0.21|ENSG00000087460|chr20:58910710-58910710|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	555.729663	1109.44477	1.5405	0.00085608	7.5269	0.0041829	9.0673	0.005039	555.7339446471158	15.87	0.19186	15.87	15.75	15.942	0	1314	94	0.8283535	0.057181895	0.8283535	335.9087		23.18805	-0.0044278	-2.8127E-05	0.00075972	NaN	25.801	401	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67750	+		31534	12999	18183	18682							-0.1055714895287565
YHDLLMTFI	9	Unmodified	_YHDLLMTFI_					0	0	0			REV__ENST00000013125.8_1_14:50949104-50952837:-|nuORF	REV__ENST00000013125.8_1_14:50949104-50952837:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.7915349949501	2	576.791535	1151.56852	1.8411	0.0010619	-4.8284	-0.002785	-2.9873	-0.0017231	577.2883152437486	28.243	0.096529	28.243	28.194	28.291	0	1203	127	0.8965218	0.07715064	0.8965218	363.3887	0	31.271576						219	5	2	NaN	NaN	NaN	0.62619	1	14860	14860		4.4131	0	1	25928	+		31535	11443	18184	18683	25160	25160					-0.0012044611460169108
YHDLLMTFI	9	Unmodified						0	0	0			REV__ENST00000013125.8_1_14:50949104-50952837:-|nuORF	REV__ENST00000013125.8_1_14:50949104-50952837:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.791535	1151.56852	1.8411	0.0010619	-4.8284	-0.002785	-2.9873	-0.0017231	577.2883152437486	28.243	0.096529	28.243	28.194	28.291	0	1203	127	0.8965218	0.07715064	0.8965218	363.3887		31.271576	0.0048299	-0.0015439	-0.0010788	NaN	4.4131	219	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25928	+		31536	11443	18184	18683							-0.0012044611460169108
YHEHAVLIC	9	Unmodified	_YHEHAVLIC_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7658515607002	2	542.765852	1083.51715	1.4776	0.00080201	2.9394	0.0015954	4.417	0.0023974	542.7692099668351	22.139	0.09647	22.125	22.077	22.173	-0.013731	1275	79	0.85233563	0.047909796	0.8508162	345.73523	0	19.433777						69	5	2	NaN	NaN	NaN	0.65388	1	11808	11808		3.1533	0.97701	1	6027.9	+		31537	10312	18185	18684	25161	25161					-0.021267700886255625
YHENKKDFSYI	11	Unmodified	_YHENKKDFSYI_					0	0	0			REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	722.3487912379002	2	722.348791	1442.68303	1.0222	0.00073837	-3.5208	-0.0025433	-2.4986	-0.0018049	722.8480609269066	28.049	0.096529	28.04	27.992	28.088	-0.0089779	1047	55	0.99186665	0.0329116	0.9903472	401.0735	0	13.308197						118	5	2	NaN	NaN	NaN	0.73057	1	19366	19366		5.4499	0	1	14324	+		31538	13438	18186	18685	25162	25162					-0.020604650989298534
YHENKKDFSYI	11	Unmodified						0	0	0			REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	722.348791	1442.68303	1.4508	0.001048	-5.8598	-0.0042328	-4.4091	-0.0031849	722.3451015879683	28.026	0.072355	28.026	27.977	28.05	0	1044	73	0.99369496	0.043882072	0.99369496	401.8128		17.744263	-0.0072042	-0.0017005	0.0016739	NaN	5.4499	126	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11777	+		31539	13438	18186	18685							-0.020604650989298534
YHENKKDFSYI	11	Unmodified						0	0	0			REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	REV__tr|U7SMR1|U7SMR1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01792PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	722.348791	1442.68303	1.0222	0.00073837	-3.5208	-0.0025433	-2.4986	-0.0018049	722.8480609269066	28.049	0.096529	28.04	27.992	28.088	-0.0089779	1047	55	0.99186665	0.0329116	0.9903472	401.0735		13.308197	0.0072042	0.0016787	-0.0016739	NaN	5.4499	118	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14324	+		31540	13438	18186	18685							-0.020604650989298534
YHFINKAKRN	10	Unmodified	_YHFINKAKRN_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	645.85692083125	2	645.856921	1289.69929	1.063	0.00068653	7.0046	0.004524	8.0676	0.0052105	645.8622207574768	39.694	0.096428	39.694	39.694	39.791	0	1197	94	0.9001988	0.057046056	0.9001988	364.41623	0	23.093231						225	5	2	NaN	NaN	NaN	0.77421	1	18597	18597		1.9246	0.41924	1	29026			31541	958	18187	18686	25163	25163					0.06602705648447227
YHFTDLFTA	9	Unmodified	_YHFTDLFTA_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	557.7638318005002	2	557.763832	1113.51311	1.226	0.00068382	-0.66016	-0.00036821	0.56584	0.0003156	557.7629222641864	14.597	0.096043	14.597	14.597	14.693	0	1245	31	0.87076044	0.018412888	0.87076044	353.08948	0	7.466339						58	5	2	NaN	NaN	NaN	0.67989	1	13410	13410		0.92586	0	1	4631.7	+		31542	8348	18188	18687	25164	25164					-0.03910536310695534
YHHERHSQLFP	11	Unmodified	_YHHERHSQLFP_					0	0	0			REV__nc|ENSG00000128254|Q9Y442|YWHAH-AS1	REV__nc|ENSG00000128254|Q9Y442|YWHAH-AS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.8523667696	2	725.852367	1449.69018	0.67919	0.00049299	8.7723	0.0063674	9.4515	0.0068604	726.3602106929109	33.43	0.19306	33.428	33.38	33.573	-0.0018501	1017	49	1.010141	0.029229581	1.0086216	408.44415	0	11.818787						161	9	3	NaN	NaN	NaN	0.57804	1	19406	19406		15.463	3.414	1	11845	+		31543	13116	18189	18688	25165	25165					-0.016676877078680263
YHHERHSQLFP	11	Unmodified						0	0	0			REV__nc|ENSG00000128254|Q9Y442|YWHAH-AS1	REV__nc|ENSG00000128254|Q9Y442|YWHAH-AS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	725.852367	1449.69018	0.67919	0.00049299	8.7723	0.0063674	9.4515	0.0068604	726.3602106929109	33.43	0.19306	33.428	33.38	33.573	-0.0018501	1017	49	1.010141	0.029229581	1.0086216	408.44415		11.818787	-0.0016148	-0.00017721	0.00015356	NaN	15.463	161	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11845	+		31544	13116	18189	18688							-0.016676877078680263
YHHLINCL	8	Unmodified	_YHHLINCL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	506.75528687440004	2	506.755287	1011.49602	1.7564	0.00089007	-3.993	-0.0020234	-2.2365	-0.0011334	506.7522787304681	22.429	0.14449	22.429	22.38	22.525	0	1269	52	0.8560222	0.031340897	0.8560222	347.5409	0	12.724243						134	7	3	NaN	NaN	NaN	0.75682	1	9034	9034		15.013	2.7532	1	12608	+		31545	9741	18190	18689	25166	25166					-0.009267353975019432
YHHLINCL	8	Unmodified						0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	506.755287	1011.49602	1.7564	0.00089007	-3.993	-0.0020234	-2.2365	-0.0011334	506.7522787304681	22.429	0.14449	22.429	22.38	22.525	0	1269	52	0.8560222	0.031340897	0.8560222	347.5409		12.724243	-0.10136	0.00077485	0.017364	NaN	15.013	134	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12608	+		31546	9741	18190	18689							-0.009267353975019432
YHHLINCL	8	Unmodified						0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	506.755287	1011.49602	1.6764	0.00084952	-5.9122	-0.002996	-4.2358	-0.0021465	506.75276625434714	22.645	0.096478	22.631	22.583	22.68	-0.01354	1323	31	0.8228144	0.018468738	0.82129496	334.05872		7.4981995	0.10136	-0.0011703	-0.017364	NaN	15.013	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4106.2	+		31547	9741	18190	18689							-0.009267353975019432
YHIGAEPF	8	Unmodified	_YHIGAEPF_					0	0	0			REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	933.4464939098001	1	933.446494	932.439217	1.7783	0.0016599	-0.27033	-0.00025234	1.508	0.0014076	933.4459894338555	26.674	0.048271	26.674	26.65	26.698	0	279	49	1.4535767	0.028470516	1.4535767	295.41272	0	5.7861023						58	3	2	NaN	NaN	NaN	0.79379	1	6652	6652		10.052	0	1	3976.8	+		31548	9485	18191	18690	25167	25167					-0.029704596823762586
YHIGAEPF	8	Unmodified						0	0	0			REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	933.446494	932.439217	1.7783	0.0016599	-0.27033	-0.00025234	1.508	0.0014076	933.4459894338555	26.674	0.048271	26.674	26.65	26.698	0	279	49	1.4535767	0.028470516	1.4535767	295.41272		5.7861023	0.0054952	0.00030937	-0.00012975	NaN	10.052	58	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3976.8	+		31549	9485	18191	18690							-0.029704596823762586
YHIGAEPF	8	Unmodified						0	0	0			REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	REV__ENST00000497536.1_1_2:240960593-240964718:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	933.446494	932.439217	2.0139	0.0018799	-1.0899	-0.0010174	0.924	0.00086251	933.4465602262429	26.673	0.048265	26.663	26.663	26.711	-0.010643	276	43	1.4553556	0.02490902	1.4538362	295.77426		5.0622864	-0.0054952	-0.00045567	0.00012975	NaN	10.052	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3064	+		31550	9485	18191	18690							-0.029704596823762586
YHKDFSLL	8	Unmodified	_YHKDFSLL_					0	0	0		ENST00000355780.9_1_8:74652059-74659054:-|nuORF	ENST00000355780.9_1_8:74652059-74659054:-|nuORF	ENST00000355780.9_1_8:74652059-74659054:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1022.5305578902002	1	1022.53056	1021.52328	1.3279	0.0013578	-6.5	-0.0066464	-5.1721	-0.0052886	1022.524025716854	35.168	0.096527	35.168	35.144	35.241	0	183	85	1.510409	0.049617648	1.510409	306.57303	0	10.071045						179	5	3	NaN	NaN	NaN	0.57691	1	9436	9436		26.732	0	1	13115			31551	6567	18192	18691	25168	25168					0.013380714145228012
YHLIRHGW	8	Unmodified	_YHLIRHGW_					0	0	0			REV__ENSG00000172967|ENST00000684488|XKR3	REV__ENSG00000172967|ENST00000684488|XKR3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.2881427743001	2	541.288143	1080.56173	1.7018	0.00092117	-6.9032	-0.0037366	-5.2014	-0.0028155	541.2847199404393	26.311	0.072361	26.3	26.252	26.324	-0.011135	1266	46	0.85786515	0.027635753	0.8563457	347.9902	0	11.210358						85	4	2	NaN	NaN	NaN	0.81807	1	11701	11701		6.794	0	1	11251	+		31552	10663	18193	18692	25169	25169					0.024674218397194636
YHLPDLPF	8	Unmodified	_YHLPDLPF_					0	0	0			REV__nc|ENSG00000116539|Q9NR48|ASH1L	REV__nc|ENSG00000116539|Q9NR48|ASH1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2581853166	2	501.258185	1000.50182	1.0292	0.00051592	1.749	0.00087672	2.7783	0.0013926	501.2585491636662	29.955	0.096504	29.949	29.901	29.997	-0.0064106	1269	37	0.8560222	0.022117019	0.85450274	347.59213	0	8.980713						86	5	2	NaN	NaN	NaN	0.79379	1	8441	8441		10.052	0	1	8578.4	+		31553	9219	18194	18693	25170	25170					0.0015868638580514016
YHMVKPSPW	9	Unmodified	_YHMVKPSPW_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	382.1917883647667	3	382.191788	1143.55354	2.1254	0.0008123	4.0704	0.0015557	6.1958	0.002368	382.19329575179717	22.693	0.09651	22.68	22.655	22.752	-0.01354	1455	25	0.7413668	0.014847219	0.73984736	450.7818	0	9.0277405						50	5	2	NaN	NaN	NaN	0.60063	1	14101	14101		2.8895	0	1	3312.7			31554	5842	18195	18694	25171	25171					-0.012498931919253664
YHNVNGHNCE	10	Unmodified	_YHNVNGHNCE_					0	0	0		ENST00000559372.1_1_15:99825225-99825312:-|nuORF	ENST00000559372.1_1_15:99825225-99825312:-|nuORF	ENST00000559372.1_1_15:99825225-99825312:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.738353719	2	593.738354	1185.46215	0.97411	0.00057837	-1.1352	-0.000674	-0.16108	-9.5638E-05	594.2394260626866	24.26	0.09655	24.248	24.224	24.32	-0.012749	1065	115	0.9808926	0.06948751	0.97937316	397.45227	0	28.155975						327	5	3	NaN	NaN	NaN	0.78213	1	15401	15401		0	0	1	25378			31555	7590	18196	18695	25172	25172					-0.12315808627226943
YHPVPGLLW	9	Unmodified	_YHPVPGLLW_					0	0	0		ENST00000475031.5_1_7:89916952-89929393:+|nuORF	ENST00000475031.5_1_7:89916952-89929393:+|nuORF	ENST00000475031.5_1_7:89916952-89929393:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	541.2951021391501	2	541.295102	1080.57565	1.9743	0.0010687	-1.5324	-0.00082947	0.44193	0.00023921	541.2941610897387	26.336	0.1448	26.336	26.239	26.384	0	1098	40	0.960755	0.02381432	0.960755	389.72705	0	9.660187						121	7	3	NaN	NaN	NaN	0.58547	1	12022	12022		6.0903	0	1	11307			31556	7173	18197	18696	25173	25173					0.03858654548139384
YHQYHLAGHYA	11	Unmodified	_YHQYHLAGHYA_					0	0	0		ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	ENSG00000140274|ENST00000323030|DUOXA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1359.622895146	1	1359.6229	1358.61562	1.7744	0.0024126	2.6616	0.0036188	4.4361	0.0060314	1359.6259714803512	38.324	0.12014	38.324	38.299	38.42	0	282	559	1.4517976	0.3314706	1.4517976	293.7007	0	67.056946						914	6	2	NaN	NaN	NaN	0.77378	1	19660	19660		1.3312	0.15435	1	65975			31557	3256	18198	18697	25174	25174					-0.04934450519249367
YHRGLTVL	8	Unmodified	_YHRGLTVL_					0	0	0		ENST00000557880.2_1_15:80236959-80237118:+|nuORF	ENST00000557880.2_1_15:80236959-80237118:+|nuORF	ENST00000557880.2_1_15:80236959-80237118:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	958.5468766564001	1	958.546877	957.5396	1.4651	0.0014043	-1.6534	-0.0015849	-0.18834	-0.00018053	958.5444286630578	29.691	0.072409	29.691	29.667	29.739	0	258	49	1.4660252	0.028446317	1.4660252	297.829	0	5.778961						67	4	2	NaN	NaN	NaN	0.83582	1	7282	7282		4.4131	0.44458	1	5246.8			31558	7580	18199	18698	25175	25175					0.05913197371273782
YHRGSELVGWA	11	Unmodified	_YHRGSELVGWA_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.8174613197501	2	637.817461	1273.62037	1.7928	0.0011435	-0.75072	-0.00047882	1.0421	0.00066468	637.8174273535949	23.778	0.1204	23.778	23.73	23.851	0	1146	55	0.93142134	0.033021748	0.93142134	377.10614	0	13.369568						146	6	3	NaN	NaN	NaN	0.57804	1	18293	18293		15.463	4.8577	1	14710			31559	1023	18200	18699	25176	25176					-0.0054956637648047035
YHRGSELVGWA	11	Unmodified						0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	637.817461	1273.62037	1.8149	0.0011576	-3.5493	-0.0022638	-1.7344	-0.0011062	637.8136664495191	23.971	0.096474	23.958	23.958	24.054	-0.01305	1140	79	0.93509084	0.047718644	0.9335714	378.5918		19.319946	0.08975	-0.0024903	0.001075	NaN	15.463	108	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14185			31560	1023	18200	18699							-0.0054956637648047035
YHSRKIFR	8	Unmodified	_YHSRKIFR_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	369.5454419557334	3	369.545442	1105.6145	1.7001	0.00062825	8.0354	0.0029694	9.7354	0.0035977	369.54853609000963	22.115	0.096542	22.115	22.091	22.187	0	1422	34	0.7617651	0.020387232	0.7617651	463.37378	0	12.401367						59	5	2	NaN	NaN	NaN	0.8439	1	13101	13101		1.9246	0	1	7487.5	+		31561	9891	18201	18700	25177	25177					0.06591379902511108
YHSYMWNNFF	10	Unmodified	_YHSYMWNNFF_					0	0	0		nc|ENSG00000163281|Q8TDQ7-4|GNPDA2;nc|ENSG00000163281|Q8TDQ7-5|GNPDA2;nc|ENSG00000163281|Q8TDQ7-3|GNPDA2;nc|ENSG00000163281|Q8TDQ7-2|GNPDA2;ENSG00000163281|ENST00000295448|GNPDA2	nc|ENSG00000163281|Q8TDQ7-4|GNPDA2	nc|ENSG00000163281|Q8TDQ7-4|GNPDA2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	470.19749057383325	3	470.197491	1407.57064	0.90078	0.00042355	-3.2706	-0.0015378	-2.3698	-0.0011143	470.1962195689141	28.194	0.048307	28.185	28.161	28.209	-0.0089779	1296	28	0.8394264	0.016604781	0.83790696	509.26566	0	10.073822						38	3	2	NaN	NaN	NaN	0.77928	1	19173	19173		0.21374	0	1	2824.7			31562	4215	18202	18701	25178	25178					-0.11684017376819611
YHVCPNYTNF	10	Unmodified	_YHVCPNYTNF_					0	0	0		ENST00000529484.5_1_11:117061404-117064733:+|nuORF;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.2714980446	2	629.271498	1256.52844	1.9416	0.0012218	-3.1975	-0.0020121	-1.2559	-0.00079029	629.2694186481733	18.892	0.16802	18.892	18.82	18.988	0	1164	70	0.9204082	0.04224682	0.9204082	372.7016	0	17.107025						149	8	2	NaN	NaN	NaN	0.56921	1	17920	17920		16.584	3.1211	1	14832			31563	3686	18203	18702	25179	25179					-0.08955992785195122
YHVVDETSPL	10	Unmodified	_YHVVDETSPL_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	387.1925110546	3	387.192511	1158.5557	1.4378	0.00055672	-4.8749	-0.0018875	-3.4371	-0.0013308	387.1912326443773	20.357	0.1204	20.343	20.271	20.391	-0.014141	1452	43	0.74322224	0.025977015	0.7417028	451.8404	0	15.792664						136	6	3	NaN	NaN	NaN	0.69669	1	14584	14584		8.2775	0.59495	1	13848			31564	5089	18204	18703	25180	25180					-0.017231859731282384
YHWWYRWWCVF	11	Unmodified	_YHWWYRWWCVF_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.3875308554	2	866.387531	1730.76051	1.5048	0.0013037	-7.6345	-0.0066144	-6.1297	-0.0053107	866.8825527944196	32.418	0.024128	32.418	32.394	32.418	0	825	46	1.1266327	0.027210474	1.1266327	454.8469	0	10.985474						50	2	2	NaN	NaN	NaN	0.77843	1	20853	20853		0.51604	0.51604	1	4335.1	+		31565	12064	18205	18704	25181	25181					-0.07564105643791663
YHWWYRWWCVF	11	Unmodified	_YHWWYRWWCVF_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.3875308554	2	866.387531	1730.76051	1.2814	0.0011101	-7.2874	-0.0063138	-6.0061	-0.0052036	866.3830003292272	32.417	0.048267	32.414	32.39	32.438	-0.0031052	822	46	1.1284465	0.027210474	1.126927	455.57916	0	10.985474						74	3	3	NaN	NaN	NaN	0.77797	1	19815	19815		0.59723	0.59723	1	4146.2	+		31566	12064	18205	18704	25182	25182					-0.07564105643791663
YHWWYRWWCVF	11	Unmodified						0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	866.387531	1730.76051	1.5048	0.0013037	-7.6345	-0.0066144	-6.1297	-0.0053107	866.8825527944196	32.418	0.024128	32.418	32.394	32.418	0	825	46	1.1266327	0.027210474	1.1266327	454.8469		10.985474	0.0021038	-0.00027188	-0.0001472	NaN	0.59723	50	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4335.1	+		31567	12064	18205	18704							-0.07564105643791663
YHWWYRWWCVF	11	Unmodified						0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	866.387531	1730.76051	1.2814	0.0011101	-7.2874	-0.0063138	-6.0061	-0.0052036	866.3830003292272	32.417	0.048267	32.414	32.39	32.438	-0.0031052	822	46	1.1284465	0.027210474	1.126927	455.57916		10.985474	-0.0021038	0.0003295	0.0001472	NaN	0.59723	74	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4146.2	+		31568	12064	18205	18704							-0.07564105643791663
YHYKEGMSPSE	11	Unmodified	_YHYKEGMSPSE_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.2848023851001	2	664.284802	1326.55505	1.2317	0.00081819	7.1814	0.0047705	8.4131	0.0055887	664.2891020340468	32.201	0.16892	32.201	32.152	32.321	0	1131	52	0.94059354	0.031172097	0.94059354	380.65662	0	12.615265						171	8	4	NaN	NaN	NaN	0.63477	1	19197	19197		11.739	2.1272	1	14378			31569	3840	18206	18705	25183	25183					-0.09516348684496734
YHYKEGMSPSE	11	Unmodified						0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	664.284802	1326.55505	1.2364	0.0008213	7.7722	0.005163	9.0086	0.0059843	664.289903620487	32.2	0.21716	32.196	32.099	32.316	-0.0037613	1128	55	0.9424274	0.033003926	0.94090796	381.39877		13.356628	-0.0024428	0.00030692	0.00015721	NaN	11.739	205	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15032			31570	3840	18206	18705							-0.09516348684496734
YHYLNQDCFT	10	Unmodified	_YHYLNQDCFT_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-2|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	435.1852506214	3	435.185251	1302.53392	1.8984	0.00082617	-4.6194	-0.0020103	-2.7209	-0.0011841	435.1834177876926	18.388	0.1679	18.388	18.364	18.532	0	1473	40	0.7302302	0.024135947	0.7302302	443.36508	0	14.654297						212	8	4	NaN	NaN	NaN	0.77024	1	18817	18817		1.2289	0	1	34562			31571	7613	18207	18706	25184	25184					-0.10524313993369105
YHYVCLWN	8	Unmodified	_YHYVCLWN_					0	0	0		PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.2472946668001	2	549.247295	1096.48004	1.31	0.00071954	-3.1096	-0.001708	-1.7996	-0.00098842	549.245207075716	26.795	0.16943	26.795	26.722	26.891	0	1218	145	0.8873258	0.08842981	0.8873258	359.875	0	35.864716						306	8	2	NaN	NaN	NaN	0.19048	1	12673	12673		50.74	26.178	1	67176			31572	8096	18208	18707	25185	25185					-0.0643444163440563
YHYVCLWN	8	Unmodified						0	0	0		PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	PLCB3|p.R826W|1|0.14|ENSG00000149782|chr11:64263711-64263711|C/T|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	549.247295	1096.48004	1.5413	0.00084656	-3.5723	-0.0019621	-2.0309	-0.0011155	549.2455661708833	26.794	0.072412	26.783	26.783	26.856	-0.010645	1140	52	0.93509084	0.031178772	0.9335714	379.2472		12.645264	-0.0057404	-0.00026403	0.023123	NaN	50.74	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4758.2			31573	8096	18208	18707							-0.0643444163440563
YIALYHDF	8	Unmodified	_YIALYHDF_					0	0	0		ENST00000531716.1_1_11:73996688-73997284:-|nuORF;ENST00000525968.1_1_11:73984627-74015361:-|nuORF;ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	ENST00000531716.1_1_11:73996688-73997284:-|nuORF	ENST00000531716.1_1_11:73996688-73997284:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.25564262765	2	521.255643	1040.49673	1.4337	0.00074735	4.1927	0.0021855	5.6264	0.0029328	521.2566722989071	24.888	0.12062	24.875	24.803	24.924	-0.012394	1296	52	0.8394264	0.031357765	0.83790696	340.6755	0	12.726349						185	6	4	NaN	NaN	NaN	0.80071	1	10009	10009		9.1232	3.0329	1	11015			31574	3676	18209	18708	25186	25186					-0.021896174768244236
YIATDFTL	8	Unmodified	_YIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.4771253362002	1	943.477125	942.469849	1.5473	0.0014598	0.053264	5.0254E-05	1.6005	0.0015101	943.4769667925434	28.798	0.19306	28.798	28.725	28.918	0	288	115	1.4482387	0.06763911	1.4482387	294.2823	0	13.744263						346	9	3	NaN	NaN	NaN	0.028839	1	6873	6873		87.795	46.335	1	50300			31575	885	18210	18709	25187	25187					-0.0036872608798148576
YIATDFTL	8	Unmodified	_YIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	943.4771253362002	1	943.477125	942.469849	1.3884	0.00131	0.85419	0.00080591	2.2426	0.0021159	943.4771984523118	28.797	0.16896	28.789	28.765	28.933	-0.0083504	285	82	1.4500183	0.04803121	1.4484988	294.6439	0	9.759949						328	8	4	NaN	NaN	NaN	0.0253	1	6736	6736		94.648	50.345	1	48655			31576	885	18210	18709	25188	25188					-0.0036872608798148576
YICPWENA	8	Unmodified	_YICPWENA_					0	0	0		GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.21820287634995	2	498.218203	994.421853	1.5457	0.00077009	-5.5425	-0.0027614	-3.9968	-0.0019913	498.21561647526255	28.701	0.12067	28.701	28.677	28.798	0	1344	49	0.8098828	0.029562771	0.8098828	328.88428	0	12.005096						111	6	3	NaN	NaN	NaN	0.82332	1	8357	8357		6.0903	0.39618	1	9573.5			31577	6197	18211	18710	25189	25189					-0.07558123279704887
YICPWENA	8	Unmodified						0	0	0		GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant;nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	498.218203	994.421853	0.9167	0.00045672	-3.9898	-0.0019878	-3.0731	-0.0015311	498.21532865157155	28.725	0.16893	28.716	28.644	28.813	-0.0083504	1344	52	0.8098828	0.031422377	0.8083634	328.88428		12.760284	0.0075184	0.00073322	-0.00075972	NaN	6.0903	133	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11401			31578	6197	18211	18710							-0.07558123279704887
YIDDLVVIL	9	Unmodified	_YIDDLVVIL_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.6081395092	1	1062.60814	1061.60086	1.5052	0.0015995	0.086913	9.2355E-05	1.5921	0.0016918	1062.60779981389	35.892	0.09639	35.892	35.868	35.964	0	84	49	1.5688156	0.028268814	1.5688156	318.26782	0	5.734955						131	5	3	NaN	NaN	NaN	0.078597	1	11197	11197		38.918	18.362	1	10716			31579	3053	18212	18711	25190	25190					0.07252664560064659
YIDDLVVIL	9	Unmodified	_YIDDLVVIL_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.6081395092	1	1062.60814	1061.60086	1.2817	0.001362	0.8144	0.00086538	2.0961	0.0022273	1062.6086907739268	35.89	0.072239	35.891	35.867	35.94	0.0011024	84	46	1.5688156	0.026500702	1.5672961	318.26782	0	5.376251						87	4	2	NaN	NaN	NaN	0.056143	1	10940	10940		44.302	22.176	1	8194.5			31580	3053	18212	18711	25191	25191					0.07252664560064659
YIDHKGPSL	9	Unmodified	_YIDHKGPSL_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5363715496	1	1029.53637	1028.5291	1.2593	0.0012965	-10.33	-0.010635	-9.0707	-0.0093386	1029.5255524408635	24.791	0.16885	24.779	24.731	24.9	-0.012394	138	67	1.5369828	0.03894806	1.5354633	311.9385	0	7.9046936						189	8	2	NaN	NaN	NaN	0.44082	1	9517	9517		12.049	0.50025	1	27806	+		31581	11256	18213	18712	25192	25192					0.01597169926208153
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.3082095144001	2	527.30821	1052.60187	1.7367	0.00091579	-2.2648	-0.0011943	-0.52809	-0.00027847	527.3072045991458	22.79	0.072298	22.79	22.766	22.838	0	1473	58	0.7302302	0.035279393	0.7302302	296.31448	0	14.315735						117	4	3	NaN	NaN	NaN	0.83582	1	10761	10761		4.4131	1.2597	1	11991			31582	477	18214	18713	25193	25193					0.07766923719623264
YIDKVRFL	8	Unmodified	_YIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.3082095144001	2	527.30821	1052.60187	1.23	0.00064861	-1.3467	-0.00071011	-0.11662	-6.1496E-05	527.3070630953666	22.886	0.12058	22.872	22.824	22.945	-0.01354	1476	52	0.72837335	0.031565785	0.7268539	295.56104	0	12.808838						134	6	2	NaN	NaN	NaN	0.81756	1	10534	10534		6.8632	2.4501	1	14423			31583	477	18214	18713	25194	25194					0.07766923719623264
YIDKVRSL	8	Unmodified	_YIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	497.29001676125	2	497.290017	992.565481	1.7223	0.00085649	-1.178	-0.00058581	0.54432	0.00027069	497.28971110557444	17.906	0.095984	17.892	17.844	17.94	-0.013786	1458	40	0.7395112	0.024125457	0.73799175	300.31482	0	9.797333						80	5	2	NaN	NaN	NaN	0.67765	1	8159	8159		20.449	2.6497	1	8364.8			31584	1910	18215	18714	25195	25195					0.06890046822900331
YIDTHTTLL	9	Unmodified	_YIDTHTTLL_					0	0	0		tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	tr|U7T648|U7T648_FUSNUGamma-glutamylcyclotransferaseAIG2-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00103PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.78476420785	2	538.784764	1075.55498	1.8321	0.00098712	-0.34122	-0.00018385	1.4909	0.00080328	538.7845455465314	24.116	0.1931	24.116	24.044	24.237	0	1221	91	0.885486	0.055232704	0.885486	359.2155	0	22.40628						393	9	4	NaN	NaN	NaN	0.03623	1	11796	11796		52.758	5.7181	1	172160			31585	13997	18216	18715	25196	25196					0.02022019377795914
YIEDNEIIYE	10	Unmodified	_YIEDNEIIYE_					0	0	0			REV__tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	REV__tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.80080820255	2	650.800808	1299.58706	0.87549	0.00056977	4.2316	0.002754	5.1071	0.0033237	650.807013358753	31.428	0.14481	31.428	31.356	31.501	0	1098	79	0.960755	0.047651827	0.960755	388.8991	0	19.288727						386	7	4	NaN	NaN	NaN	0.16973	1	18767	18767		38.131	9.2352	1	85836	+		31586	13402	18217	18716	25197	25197					-0.05074657729710452
YIEGSVLVL	9	Unmodified	_YIEGSVLVL_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	992.5662746945001	1	992.566275	991.558998	1.6511	0.0016388	0.2624	0.00026045	1.9135	0.0018993	992.565852437658	29.979	0.048254	29.973	29.949	29.997	-0.0064087	207	49	1.496219	0.028388977	1.4946996	303.81503	0	5.7645264						60	3	2	NaN	NaN	NaN	0.27442	1	8124	8124		20.555	1.4371	1	5482.4	+		31587	10275	18218	18717	25198	25198					0.062881088715244
YIEGSVLVL	9	Unmodified						0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.566275	991.558998	2.2685	0.0022517	-0.59296	-0.00058855	1.6756	0.0016631	992.5657878928407	29.98	0.096531	29.98	29.932	30.029	0	201	43	1.4997677	0.024837732	1.4997677	304.53558		5.0434265	0.003666	-0.00045432	0.002534	NaN	20.555	67	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5632.9	+		31588	10275	18218	18717							0.062881088715244
YIEGSVLVL	9	Unmodified						0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.566275	991.558998	1.6511	0.0016388	0.2624	0.00026045	1.9135	0.0018993	992.565852437658	29.979	0.048254	29.973	29.949	29.997	-0.0064087	207	49	1.496219	0.028388977	1.4946996	303.81503		5.7645264	-0.003666	0.00039469	-0.002534	NaN	20.555	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5482.4	+		31589	10275	18218	18717							0.062881088715244
YIEKLELI	8	Unmodified	_YIEKLELI_					0	0	0		ENST00000218789.9_3_13:111955580-111955631:+|nuORF	ENST00000218789.9_3_13:111955580-111955631:+|nuORF	ENST00000218789.9_3_13:111955580-111955631:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1020.5975748229001	1	1020.59757	1019.5903	1.5354	0.0015671	-1.2619	-0.0012879	0.27353	0.00027916	1020.5964527362322	36.011	0.12061	36.012	35.916	36.036	0.0011024	96	58	1.5617468	0.033588886	1.5602274	317.00125	0	6.8178406						142	6	2	NaN	NaN	NaN	0.14443	1	9171	9171		55.494	5.6607	1	14597			31590	6233	18219	18718	25199	25199					0.08128681905623125
YIEKLELI	8	Unmodified						0	0	0		ENST00000218789.9_3_13:111955580-111955631:+|nuORF	ENST00000218789.9_3_13:111955580-111955631:+|nuORF	ENST00000218789.9_3_13:111955580-111955631:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1020.59757	1019.5903	2.3684	0.0024172	2.3618	0.0024104	4.7302	0.0048276	1020.6004226989384	36.061	0.024124	36.061	36.036	36.061	0	96	37	1.5617468	0.02121067	1.5617468	317.00122		4.305298	0.024321	0.0024655	0.00075972	NaN	55.494	41	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3536			31591	6233	18219	18718							0.08128681905623125
YIEMNIPWLYF	11	Unmodified	_YIEMNIPWLYF_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.9125796584	3	496.91258	1487.71591	1.7628	0.00087598	-0.55749	-0.00027702	1.2054	0.00059896	497.2465581786208	23.778	0.024134	23.778	23.754	23.778	0	1386	46	0.78399014	0.027761698	0.78399014	475.3844	0	16.83371						51	2	2	NaN	NaN	NaN	0.76251	1	20539	20539		3.3044	0.84329	1	5417.4			31592	4915	18220	18719	25200	25200					-0.008439743004601041
YIESSDMRDQ	10	Unmodified	_YIESSDMRDQ_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	415.1801652435	3	415.180165	1242.51867	1.0119	0.00042012	-9.2114	-0.0038244	-8.1995	-0.0034043	415.1764766440625	37.167	0.096313	37.169	37.145	37.241	0.0022507	1458	34	0.7395112	0.020413876	0.73799175	449.22733	0	12.400696						60	5	2	NaN	NaN	NaN	0.75966	1	16835	16835		1.6985	0	1	6209	+		31593	10718	18221	18720	25201	25201					-0.09289225581187566
YIFFAKVLERG	11	Unmodified	_YIFFAKVLERG_					0	0	0		ENST00000471158.1_1_3:53137921-53154019:-|nuORF;ENSG00000163933|ENST00000296292|RFT1	ENST00000471158.1_1_3:53137921-53154019:-|nuORF	ENST00000471158.1_1_3:53137921-53154019:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	448.2554456624	3	448.255446	1341.74451	0.87318	0.00039141	-9.4773	-0.0042482	-8.6041	-0.0038568	448.2511913334921	21.127	0.072281	21.127	21.103	21.175	0	1395	31	0.7784366	0.018516839	0.7784366	472.48926	0	11.239166						82	4	3	NaN	NaN	NaN	0.68478	1	19443	19443		8.4563	1.3259	1	7537.4			31594	4273	18222	18721	25202	25202					0.08730511390990614
YIFIGDGAINY	11	Unmodified	_YIFIGDGAINY_					0	0	0		tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	tr|U7SWJ5|U7SWJ5_FUSNUUniversalbacterialproteinYeaZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01066PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.3111461338501	2	623.311146	1244.60774	0.27371	0.00017061	-3.2757	-0.0020418	-3.002	-0.0018712	623.3091986227548	33.382	0.096527	33.38	33.356	33.452	-0.0018501	1143	49	0.9332562	0.029358983	0.93173677	377.94348	0	11.889618						141	5	3	NaN	NaN	NaN	0.69801	1	16885	16885		7.5876	0.047225	1	13891			31595	13902	18223	18722	25203	25203					-0.004780225593776777
YIFLVVFIM	9	Unmodified	_YIFLVVFIM_					0	0	0		tr|U7SUJ6|U7SUJ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01194PE=4SV=1	tr|U7SUJ6|U7SUJ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01194PE=4SV=1	tr|U7SUJ6|U7SUJ6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01194PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.827389185	2	572.827389	1143.64023	1.6426	0.00094091	-9.6467	-0.0055259	-8.0041	-0.004585	572.8217100325518	26.601	0.048265	26.601	26.601	26.65	0	1197	55	0.9001988	0.03307879	0.9001988	364.90906	0	13.408997						77	3	2	NaN	NaN	NaN	0.48931	1	14595	14595		10.052	0	1	12815			31596	13889	18224	18723	25204	25204					0.07415093309896292
YIFLVYAA	8	Unmodified	_YIFLVYAA_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.26547903244995	2	480.265479	958.516405	2.097	0.0010071	-5.4565	-0.0026206	-3.3595	-0.0016135	480.2624026087531	21.561	0.16863	21.547	21.475	21.643	-0.013895	1323	49	0.8228144	0.029556334	0.82129496	334.3064	0	12.008667						72	8	2	NaN	NaN	NaN	0.84876	1	7157	7157		0.39566	0	1	5910.5			31597	5189	18225	18724	25205	25205					0.03548758533929686
YIFLVYAA	8	Unmodified						0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	480.265479	958.516405	1.6383	0.0007868	0.030008	1.4412E-05	1.6683	0.00080121	480.26511624227413	21.585	0.096344	21.585	21.513	21.609	0	1323	34	0.8228144	0.02031231	0.8228144	334.30637		8.252808	0.018978	0.0019251	0.00075972	NaN	0.39566	87	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6606			31598	5189	18225	18724							0.03548758533929686
YIFTKKRKQ	9	Unmodified	_YIFTKKRKQ_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.3665900605502	2	606.36659	1210.71863	1.3696	0.00083047	0.60141	0.00036468	1.971	0.0011952	606.3674806956349	54.524	0.096409	54.524	54.5	54.596	0	1137	43	0.9369253	0.02568084	0.9369253	379.54584	0	10.403198						210	5	5	NaN	NaN	NaN	0.67818	1	16741	16741		1.072	0	1	24788			31599	1462	18226	18725	25206	25206					0.12169661939378784
YIFTKKRKQ	9	Unmodified	_YIFTKKRKQ_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.3665900605502	2	606.36659	1210.71863	0.67456	0.00040903	3.7877	0.0022967	4.4622	0.0027057	606.3686052600353	31.694	0.12069	31.694	31.694	31.815	0	1131	64	0.94059354	0.038506687	0.94059354	381.03183	0	15.598938						185	6	2	NaN	NaN	NaN	0.66196	1	16742	16742		2.4615	0.28518	1	21281			31600	1462	18226	18725	25207	25207					0.12169661939378784
YIGAALVL	8	Unmodified	_YIGAALVL_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	819.4974668478	1	819.497467	818.49019	2.1547	0.0017658	0.20908	0.00017134	2.3638	0.0019371	819.4969446265783	29.908	0.072367	29.908	29.884	29.956	0	405	46	1.3786905	0.026803493	1.3786905	280.76047	0	5.4583435						69	4	2	NaN	NaN	NaN	0.77734	1	5003	5003		12.26	4.6695	1	6352.1			31601	3057	18227	18726	25208	25208					0.07368489362454511
YIGAALVL	8	Unmodified						0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	819.497467	818.49019	1.4652	0.0012007	0.066231	5.4276E-05	1.5315	0.001255	819.497090089795	29.907	0.048265	29.9	29.876	29.924	-0.0070667	408	46	1.3769034	0.026803493	1.375384	280.39655		5.4583435	-0.0039928	-7.4786E-05	-0.0016533	NaN	12.26	70	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6514.3			31602	3057	18227	18726							0.07368489362454511
YIGDGGSG	8	Unmodified	_YIGDGGSG_					0	0	0			REV__BRSK1|p.G685D|1|0.23|ENSG00000160469|chr19:55306415-55306415|G/A|missense_variant	REV__BRSK1|p.G685D|1|0.23|ENSG00000160469|chr19:55306415-55306415|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	725.3100600079002	1	725.31006	724.302784	1.5122	0.0010968	6.1369	0.0044512	7.6491	0.005548	725.3144773782782	23.923	0.19294	23.91	23.837	24.03	-0.013048	657	61	1.2279087	0.03605783	1.2263893	250.5909	0	7.358658						156	9	2	NaN	NaN	NaN	0.81807	1	3588	3588		6.794	0	1	15935	+		31603	8167	18228	18727	25209	25209					-0.0703957391287986
YIGIGLLIL	9	Unmodified	_YIGIGLLIL_					0	0	0			REV__ENST00000187830.2_1_19:45147391-45165075:+|nuORF	REV__ENST00000187830.2_1_19:45147391-45165075:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.6284810208002	1	974.628481	973.621205	2.1643	0.0021094	0.37517	0.00036566	2.5395	0.0024751	974.6286053316446	40.174	0.096214	40.18	40.108	40.204	0.0060463	156	34	1.5263584	0.019481182	1.5248389	310.01324	0	3.9567566						57	5	2	NaN	NaN	NaN	0.48931	1	7572	7572		10.052	0	1	2747.4	+		31604	8591	18229	18728	25210	25210					0.13333880010532084
YIGLLQQLL	9	Unmodified	_YIGLLQQLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.8236924031002	2	530.823692	1059.63283	0.16079	8.5351E-05	-2.2057	-0.0011708	-2.0449	-0.0010855	530.8226195322356	33.575	0.072422	33.573	33.549	33.621	-0.0018463	1209	52	0.892844	0.03126645	0.8913246	362.26926	0	12.686279						105	4	2	NaN	NaN	NaN	0.48931	1	10850	10850		10.052	0	1	14700			31605	3044	18230	18729	25211	25211					0.10540077033874695
YIGQCMCEGL	10	Unmodified	_YIGQCMCEGL_					0	0	0			REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1116.4522492685999	1	1116.45225	1115.44497	1.0499	0.0011721	-2.9456	-0.0032886	-1.8957	-0.0021165	1116.4493782390007	32.948	0.14468	32.945	32.897	33.042	-0.0024757	81	61	1.5705823	0.035336137	1.5690628	318.42883	0	7.1642456						262	7	4	NaN	NaN	NaN	0.27719	1	13092	13092		28.896	5.5612	1	26195	+		31606	8213	18231	18730	25212	25212					-0.10813188548900143
YIGQCMCEGL	10	Unmodified						0	0	0			REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1116.45225	1115.44497	1.0499	0.0011721	-2.9456	-0.0032886	-1.8957	-0.0021165	1116.4493782390007	32.948	0.14468	32.945	32.897	33.042	-0.0024757	81	61	1.5705823	0.035336137	1.5690628	318.42883		7.1642456	-0.0017998	6.6965E-05	0.00012364	NaN	28.896	262	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26195	+		31607	8213	18231	18730							-0.10813188548900143
YIGRFMPDT	9	Unmodified	_YIGRFMPDT_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1099.5240923038	1	1099.52409	1098.51682	1.8627	0.002048	-10.738	-0.011807	-8.8754	-0.0097587	1099.5116446349534	36.856	0.048138	36.856	36.808	36.856	0	63	34	1.5811787	0.019423604	1.5811787	320.63763	0	3.9387817						41	3	2	NaN	NaN	NaN	0.44082	1	12775	12775		12.049	2.3027	1	2085.8	+		31608	9968	18232	18731	25213	25213					-0.0285018980850964
YIGVSLVL	8	Unmodified	_YIGVSLVL_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;SLC39A9|p.L248Pfs*19|1|0.29|ENSG00000029364|chr14:69458409-69458418|TGCTTTTCTC/-|frameshift_variant;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.5236815983	1	863.523682	862.516405	1.2198	0.0010533	-1.9139	-0.0016527	-0.69414	-0.00059941	863.5222149555755	32.151	0.048248	32.148	32.148	32.196	-0.0037613	339	46	1.4179583	0.026746511	1.4164388	288.5137	0	5.4421387						54	3	2	NaN	NaN	NaN	0.46176	1	5432	5432		33.137	0	1	4340.4			31609	487	18233	18732	25214	25214					0.07964758533933036
YIHKQTEEGG	10	Unmodified	_YIHKQTEEGG_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.85601037	3	387.85601	1160.5462	1.1507	0.0004463	-6.3645	-0.0024685	-5.2138	-0.0020222	387.85353019757525	20.814	0.096386	20.814	20.79	20.887	0	1431	28	0.75620437	0.016684115	0.75620437	459.72363	0	10.142853						59	5	2	NaN	NaN	NaN	0.77318	1	15158	15158		0.81135	0.37917	1	7000.4			31610	1097	18234	18733	25215	25215					-0.027649542586686948
YIHKQTEEGG	10	Unmodified						0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	387.85601	1160.5462	1.339	0.00051933	-5.8413	-0.0022656	-4.5023	-0.0017463	387.85292753107944	20.911	0.14442	20.897	20.897	21.041	-0.014086	1428	25	0.7580582	0.014831126	0.75653875	460.85062		9.016388	0.041256	0.00053071	0.00016718	NaN	0.81135	65	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5372.8			31611	1097	18234	18733							-0.027649542586686948
YIHKYTLY	8	Unmodified	_YIHKYTLY_					0	0	0		ENST00000396981.6_1_17:4175487-4175577:-|nuORF	ENST00000396981.6_1_17:4175487-4175577:-|nuORF	ENST00000396981.6_1_17:4175487-4175577:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.7923922747001	2	550.792392	1099.57023	1.7451	0.0009612	-0.029011	-1.5979E-05	1.7161	0.00094522	550.7930962607164	25.37	0.096497	25.358	25.31	25.407	-0.012011	1242	67	0.87260187	0.040490866	0.8710824	353.89102	0	16.421417						219	5	4	NaN	NaN	NaN	0.84207	1	12501	12501		3.5732	0.41988	1	28817			31612	6801	18235	18734	25216	25216					0.024429309656625264
YIHLAVQFSR	10	Unmodified	_YIHLAVQFSR_					0	0	0			REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	REV__ENST00000511730.2_1_5:40716249-40756023:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.8961403390666	3	411.89614	1232.66659	1.617	0.00066603	0.62806	0.0002587	2.2451	0.00092473	411.8958218936822	16.949	0.071955	16.949	16.949	17.021	0	1416	70	0.76547134	0.04262334	0.76547134	465.03793	0	25.89447						88	4	2	NaN	NaN	NaN	0.75966	1	17353	17353		1.6985	0.46954	1	7689	+		31613	9154	18236	18735	25217	25217					0.059564985255974534
YIIGADTVM	9	Unmodified	_YIIGADTVM_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4913951919001	1	982.491395	981.484119	1.928	0.0018942	0.85318	0.00083824	2.7811	0.0027325	982.4922740966047	26.577	0.096554	26.577	26.553	26.65	0	243	55	1.4749115	0.031985164	1.4749115	299.53055	0	6.4956665						130	5	3	NaN	NaN	NaN	0.14945	1	7939	7939		28.667	1.935	1	11644			31614	2039	18237	18736	25218	25218					-0.007363969313587404
YIIGADTVM	9	Oxidation (M)	_YIIGADTVM(Oxidation (M))_		YIIGADTVM(1)		YIIGADTVM(62)	0	0	1		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	998.4863098140002	1	998.48631	997.479033	2.0584	0.0020553	-0.83513	-0.00083387	1.2233	0.0012214	998.4869297020983	22.67	0.096485	22.67	22.645	22.742	0	243	52	1.4749115	0.030206561	1.4749115	299.46405	0	6.133087						92	5	2	NaN	NaN	NaN	0.02781	1	8473	8473		61.977	37.016	1	10242			31615	2039	18237	18737	25219	25219		233			-0.019807007939675714
YIIGADTVM	9	Oxidation (M)	_YIIGADTVM(Oxidation (M))_		YIIGADTVM(1)		YIIGADTVM(83)	0	0	1		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4863098140002	1	998.48631	997.479033	1.6802	0.0016776	-1.9228	-0.0019199	-0.24264	-0.00024228	998.484529522219	22.693	0.12063	22.68	22.631	22.752	-0.01354	240	52	1.4766881	0.030200124	1.4751687	299.82477	0	6.1318054						117	6	3	NaN	NaN	NaN	0.013314	1	8296	8296		82.858	38.22	1	9201.6			31616	2039	18237	18737	25220	25220		233			-0.019807007939675714
YIIYGMYFCMN	11	Unmodified	_YIIYGMYFCMN_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	709.3030949862001	2	709.303095	1416.59164	1.7228	0.001222	-4.2338	-0.003003	-2.5109	-0.001781	709.3005649425361	23.248	0.072332	23.248	23.224	23.296	0	1044	34	0.99369496	0.020111501	0.99369496	401.8831	0	8.133789						41	4	2	NaN	NaN	NaN	0.68634	1	20195	20195		8.2448	1.8149	1	3399.2			31617	1416	18238	18738	25221	25221					-0.0999951138378492
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	478.78182758840006	2	478.781828	955.549102	1.8794	0.00089983	-2.5624	-0.0012268	-0.68302	-0.00032702	478.7805225939324	17.093	0.14408	17.093	17.045	17.189	0	1515	64	0.7042165	0.039048076	0.7042165	286.13306	0	15.865784						272	7	3	NaN	NaN	NaN	0.13059	1	7239	7239		58.235	24.537	1	58071			31618	1155	18239	18739	25222	25222					0.06954965656814238
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.78182758840006	2	478.781828	955.549102	1.8323	0.00087726	-1.9747	-0.00094546	-0.14245	-6.8201E-05	478.7806949721359	17.234	0.21585	17.22	17.124	17.34	-0.013569	1518	61	0.7023569	0.037190676	0.70083743	285.37747	0	15.1111145						374	10	3	NaN	NaN	NaN	0.10172	1	7100	7100		63.958	30.26	1	65243			31619	1155	18239	18739	25223	25223					0.06954965656814238
YIKQIKTF	8	Unmodified	_YIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	520.81058502785	2	520.810585	1039.60662	1.7345	0.00090336	-2.7949	-0.0014556	-1.0603	-0.00055223	520.8089407207547	19.54	0.096003	19.54	19.516	19.612	0	1449	40	0.74507743	0.024117589	0.74507743	302.38803	0	9.788086						76	5	3	NaN	NaN	NaN	0.73961	1	10212	10212		16.584	6.8382	1	5913.5			31620	1443	18240	18740	25224	25224					0.08839807862364069
YIKQIKTF	8	Unmodified						0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	520.810585	1039.60662	2.0254	0.0010548	-2.5916	-0.0013497	-0.56624	-0.00029491	520.809682659357	19.659	0.048172	19.645	19.597	19.645	-0.014143	1449	31	0.74507743	0.018552959	0.743558	302.38803		7.5296936	0.052387	0.00013754	-0.00075972	NaN	16.584	47	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3965.2			31621	1443	18240	18740							0.08839807862364069
YIKSVSIKA	9	Unmodified	_YIKSVSIKA_					0	0	0		ENST00000220751.4_1_8:90802644-90802779:+|nuORF	ENST00000220751.4_1_8:90802644-90802779:+|nuORF	ENST00000220751.4_1_8:90802644-90802779:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.6088082112002	1	1008.60881	1007.60153	-0.10868	-0.00010962	0.65257	0.00065819	0.54389	0.00054857	1008.6097736707075	56.083	0.048054	56.082	56.058	56.106	-0.00056458	171	52	1.5174994	0.03012979	1.51598	308.06885	0	6.1166687						65	3	2	NaN	NaN	NaN	0.66822	1	8734	8734		1.9246	0.25428	1	9395.6			31622	6235	18241	18741	25225	25225					0.09803503999762597
YIKSVSIKA	9	Unmodified						0	0	0		ENST00000220751.4_1_8:90802644-90802779:+|nuORF	ENST00000220751.4_1_8:90802644-90802779:+|nuORF	ENST00000220751.4_1_8:90802644-90802779:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.60881	1007.60153	1.7472	0.0017623	0.4299	0.0004336	2.1771	0.0021959	1008.6090204314276	56.085	0.048046	56.085	56.061	56.109	0	174	49	1.5157272	0.028358936	1.5157272	307.70905		5.7571716	0.0013502	-0.00012105	-0.00012645	NaN	1.9246	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7954.4			31623	6235	18241	18741							0.09803503999762597
YIKVKPLLV	9	Unmodified	_YIKVKPLLV_					0	0	0		ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	358.24247742846666	3	358.242477	1071.7056	1.9978	0.00071571	-2.8717	-0.0010287	-0.87381	-0.00031303	358.2413638265446	23.079	0.21689	23.065	22.993	23.21	-0.013294	1428	61	0.7580582	0.037065744	0.75653875	461.2982	0	22.555481						323	10	4	NaN	NaN	NaN	0.31471	1	11342	11342		17.97	4.5066	1	71660			31624	5143	18242	18742	25226	25226					0.17261830827260383
YILAVHSD	8	Unmodified	_YILAVHSD_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	917.4727086603001	1	917.472709	916.465432	2.2268	0.002043	3.308	0.003035	5.5347	0.005078	917.47641246704	23.079	0.072191	23.065	23.041	23.114	-0.013294	315	43	1.4322147	0.024938107	1.4306953	291.1451	0	5.069519						58	4	2	NaN	NaN	NaN	0.84207	1	6224	6224		3.5732	0.41988	1	4017.7			31625	329	18243	18743	25227	25227					0.0038580948910293955
YILAVHSD	8	Unmodified						0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	917.472709	916.465432	2.1556	0.0019777	2.5127	0.0023053	4.6683	0.0042831	917.475891514829	23.079	0.072247	23.079	23.055	23.128	0	315	37	1.4322147	0.021375537	1.4322147	291.1451		4.3453064	0.0069087	-0.00040186	0.00075972	NaN	3.5732	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4295.9			31626	329	18243	18743							0.0038580948910293955
YILDKKLL	8	Unmodified	_YILDKKLL_					0	0	0		tr|U7T3G7|U7T3G7_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00271PE=3SV=1	tr|U7T3G7|U7T3G7_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00271PE=3SV=1	tr|U7T3G7|U7T3G7_FUSNUsite-specificDNA-methyltransferase(adenine-specific)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00271PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	503.3207855734001	2	503.320786	1004.62702	1.7763	0.00089406	-3.4984	-0.0017608	-1.722	-0.00086674	503.3195989952622	26.239	0.12063	26.228	26.204	26.324	-0.011137	1284	31	0.8468043	0.018440783	0.8452849	343.83002	0	7.487549						76	6	2	NaN	NaN	NaN	0.74229	1	8607	8607		16.417	1.2413	1	7499.8			31627	13971	18244	18744	25228	25228					0.12488978522196703
YILGLLGLL	9	Unmodified	_YILGLLGLL_					0	0	0		ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.6284810208002	1	974.628481	973.621205	0.96988	0.00094527	0.57482	0.00056023	1.5447	0.0015055	974.6288017858454	38.972	0.096111	38.972	38.924	39.02	0	129	73	1.5422925	0.042470813	1.5422925	313.24957	0	8.626099						225	5	3	NaN	NaN	NaN	0.10053	1	7719	7719		35.745	0	1	31881			31628	4399	18245	18745	25229	25229					0.13333880010532084
YILKSQLYI	9	Unmodified	_YILKSQLYI_					0	0	0		nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	380.89362534110006	3	380.893625	1139.65905	1.4884	0.00056691	-2.1645	-0.00082443	-0.67611	-0.00025753	381.22697581111413	20.573	0.024086	20.573	20.549	20.573	0	1506	34	0.70979416	0.020447075	0.70979416	431.6019	0	12.433197						32	2	2	NaN	NaN	NaN	0.13196	1	14444	14444		31.198	2.7028	1	2381.5			31629	3942	18246	18746	25230	25230					0.09480346205350543
YILKWGNK	8	Unmodified	_YILKWGNK_					0	0	0		tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	tr|U7ST86|U7ST86_FUSNUATP-dependentDNAhelicaseDinGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01328PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.29510213915	2	511.295102	1020.57565	1.7311	0.00088512	-5.1187	-0.0026172	-3.3876	-0.0017321	511.2925818353532	18.002	0.144	17.988	17.94	18.084	-0.013786	1251	43	0.8670771	0.025783658	0.8655577	351.9871	0	10.466797						187	7	3	NaN	NaN	NaN	0.62311	1	9215	9215		23.85	4.5657	1	39505			31630	13845	18247	18747	25231	25231					0.06618654548128688
YILLAMGGLL	10	Unmodified	_YILLAMGGLL_					0	0	0		ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.3146459505001	2	532.314646	1062.61474	2.0065	0.0010681	5.9129	0.0031475	7.9194	0.0042156	532.3180581361652	30.004	0.096531	30.004	29.932	30.029	0	1221	88	0.885486	0.053365707	0.885486	359.27078	0	21.652191						176	5	3	NaN	NaN	NaN	0.772	1	11257	11257		2.4615	1.2197	1	19375			31631	3962	18248	18748	25232	25232					0.08593618787494961
YILPNLMPSLF	11	Unmodified	_YILPNLMPSLF_					0	0	0			REV__ENSG00000255012|ENST00000641076|OR5M1	REV__ENSG00000255012|ENST00000641076|OR5M1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	654.35704208145	2	654.357042	1306.69953	0.55815	0.00036523	2.1234	0.0013895	2.6815	0.0017547	654.8587765616859	30.438	0.21717	30.432	30.408	30.625	-0.0057545	1107	52	0.9552588	0.031145215	0.9537394	386.6522	0	12.606384						142	10	2	NaN	NaN	NaN	0.66717	1	18050	18050		9.6116	0.69255	1	14635	+		31632	11378	18249	18749	25233	25233					0.058449445334190386
YILVMQPIE	9	Unmodified	_YILVMQPIE_					0	0	0			REV__ENST00000223023.4_1_7:123336768-123346405:-|nuORF	REV__ENST00000223023.4_1_7:123336768-123346405:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	553.3017355405001	2	553.301736	1104.58892	1.1414	0.00063156	-0.94091	-0.00052061	0.20052	0.00011095	553.3012691575979	26.891	0.24135	26.88	26.808	27.049	-0.010643	1221	88	0.885486	0.05337143	0.88396657	359.0961	0	21.644012						447	11	4	NaN	NaN	NaN	0.29681	1	12705	12705		19.118	0	1	59015	+		31633	11472	18250	18750	25234	25234					0.040807245452015195
YILWNYHF	8	Unmodified	_YILWNYHF_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2847344181	2	578.284734	1154.55492	1.9781	0.0011439	-10.437	-0.0060358	-8.4592	-0.0048918	578.779266568254	23.393	0.04825	23.393	23.393	23.441	0	1224	79	0.883646	0.04781151	0.883646	358.15878	0	19.378906						76	3	2	NaN	NaN	NaN	0.76633	1	14956	14956		13.737	4.818	1	10158	+		31634	10713	18251	18751	25235	25235					-0.016179358315412173
YIMTRLWIC	9	Unmodified	_YIMTRLWIC_					0	0	0			REV__ENST00000507606.2_1_7:135347283-135358947:+|nuORF	REV__ENST00000507606.2_1_7:135347283-135358947:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8092048193502	2	599.809205	1197.60386	1.4972	0.00089804	-1.3245	-0.00079442	0.17275	0.00010362	599.8089889376589	24.912	0.072393	24.9	24.875	24.948	-0.012392	1011	61	1.0137935	0.036521196	1.012274	410.73566	0	14.796448						63	4	2	NaN	NaN	NaN	0.6907	1	15753	15753		0	0	1	4332.7	+		31635	12542	18252	18752	25236	25236					0.012958931415596453
YINASLIK	8	Unmodified	_YINASLIK_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	921.5403942950002	1	921.540394	920.533118	2.1879	0.0020162	7.4961	0.006908	9.684	0.0089242	921.5486782084342	51.828	0.023979	51.828	51.805	51.828	0	351	31	1.4108255	0.017835736	1.4108255	286.77826	0	3.6254578						30	2	2	NaN	NaN	NaN	0.80692	1	6424	6424		8.2903	0	1	1820.7			31636	5618	18253	18753	25237	25237					0.06967259419911898
YINNIHLTR	9	Unmodified	_YINNIHLTR_					0	0	0		nc|ENSG00000293247|Q96P09|BIRC8	nc|ENSG00000293247|Q96P09|BIRC8	nc|ENSG00000293247|Q96P09|BIRC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	381.88049027486664	3	381.88049	1142.61964	1.8873	0.00072071	-10.127	-0.0038674	-8.24	-0.0031467	381.8769636473798	20.405	0.072325	20.391	20.367	20.439	-0.014141	1473	31	0.7302302	0.018567085	0.7287108	444.01465	0	11.289673						65	4	3	NaN	NaN	NaN	0.58159	1	14076	14076		5.9198	2.3404	1	4480.2			31637	8064	18254	18754	25238	25238					0.0540363897446241
YINVKASEKLD	11	Unmodified	_YINVKASEKLD_					0	0	0		ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENST00000446317.1_1_20:3471092-3471287:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.2345987699667	3	427.234599	1278.68197	1.247	0.00053276	-5.4785	-0.0023406	-4.2315	-0.0018078	427.2319444719934	24.068	0.07235	24.068	24.044	24.116	0	1467	49	0.7339432	0.02971059	0.7339432	445.70657	0	18.042542						68	4	2	NaN	NaN	NaN	0.63477	1	18396	18396		5.9336	0	1	6487.5			31638	7021	18255	18755	25239	25239					0.05377320532147678
YINYKDEEI	9	Unmodified	_YINYKDEEI_					0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.7849611731	2	593.784961	1185.55537	2.0158	0.0011969	-6.4602	-0.003836	-4.4445	-0.0026391	593.7814160151252	22.863	0.50618	22.863	22.67	23.176	0	1200	103	0.89836043	0.062461972	0.89836043	364.01038	0	25.309235						941	22	5	NaN	NaN	NaN	0.12328	1	16023	16023		32.453	3.5572	1	261160	+		31639	9067	18256	18756	25240	25240					-0.029986056930056293
YINYKDEEI	9	Unmodified						0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	593.784961	1185.55537	2.0158	0.0011969	-6.4602	-0.003836	-4.4445	-0.0026391	593.7814160151252	22.863	0.50618	22.863	22.67	23.176	0	1200	103	0.89836043	0.062461972	0.89836043	364.01038		25.309235	-0.016974	-0.00047043	0.00075972	NaN	32.453	941	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261160	+		31640	9067	18256	18756							-0.029986056930056293
YINYKDEEI	9	Unmodified						0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	593.784961	1185.55537	1.3003	0.00077209	-5.5554	-0.0032987	-4.2551	-0.0025266	593.7824031129546	22.91	0.24105	22.896	22.704	22.945	-0.01354	1200	109	0.89836043	0.06613624	0.896841	364.01038		26.798035	0.016974	0.00060418	-0.00075972	NaN	32.453	549	11	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137310	+		31641	9067	18256	18756							-0.029986056930056293
YIPEYEYFYM	10	Unmodified	_YIPEYEYFYM_					0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	473.2055402621666	3	473.20554	1416.59479	0.98692	0.00046702	-8.6368	-0.004087	-7.6499	-0.00362	473.2011778115063	23.272	0.096489	23.258	23.234	23.331	-0.013294	1395	37	0.7784366	0.02221781	0.77691716	472.235	0	13.478302						88	5	3	NaN	NaN	NaN	0.77348	1	19235	19235		2.1026	0.40409	1	9471.9	+		31642	10543	18257	18757	25241	25241					-0.09684221733800769
YIPEYEYFYM	10	Unmodified						0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	473.20554	1416.59479	1.6747	0.00079248	-10.537	-0.0049864	-8.8627	-0.0041939	473.20028356958136	23.248	0.096413	23.248	23.224	23.32	0	1392	40	0.780288	0.024067938	0.780288	473.35812		14.600708	-0.005157	-0.0011084	0.0016854	NaN	2.1026	105	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8943	+		31643	10543	18257	18757							-0.09684221733800769
YIPEYEYFYM	10	Unmodified						0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	473.20554	1416.59479	0.98692	0.00046702	-8.6368	-0.004087	-7.6499	-0.00362	473.2011778115063	23.272	0.096489	23.258	23.234	23.331	-0.013294	1395	37	0.7784366	0.02221781	0.77691716	472.235		13.478302	0.005157	0.0015897	-0.0016854	NaN	2.1026	88	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9471.9	+		31644	10543	18257	18757							-0.09684221733800769
YIPNKYNR	8	Unmodified	_YIPNKYNR_					0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.28526573435	2	534.285266	1066.55598	1.623	0.00086717	-3.2961	-0.0017611	-1.6731	-0.00089389	534.2836186349732	25.66	0.096466	25.648	25.6	25.696	-0.011602	1164	52	0.9204082	0.031222522	0.91888875	373.42227	0	12.667419						139	5	3	NaN	NaN	NaN	0.84692	1	11146	11146		1.4396	0	1	12491	+		31645	11290	18258	18758	25242	25242					0.025362785373545194
YIPNKYNR	8	Unmodified						0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	534.285266	1066.55598	2.296	0.0012267	-1.7272	-0.00092282	0.56883	0.00030392	534.2852118005942	25.636	0.16887	25.636	25.539	25.708	0	1167	124	0.91857195	0.07539916	0.91857195	372.67728		30.590454	-0.0061371	0.0012519	-0.00015839	NaN	1.4396	204	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18602	+		31646	11290	18258	18758							0.025362785373545194
YIPNKYNR	8	Unmodified						0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.285266	1066.55598	1.623	0.00086717	-3.2961	-0.0017611	-1.6731	-0.00089389	534.2836186349732	25.66	0.096466	25.648	25.6	25.696	-0.011602	1164	52	0.9204082	0.031222522	0.91888875	373.42227		12.667419	0.0061371	-0.00042458	0.00015839	NaN	1.4396	139	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12491	+		31647	11290	18258	18758							0.025362785373545194
YIPSDFFDAQ	10	Unmodified	_YIPSDFFDAQ_					0	0	0		ENSG00000060339|ENST00000265872|CCAR1;nc|ENSG00000060339|Q8IX12-2|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.51699468743334	3	401.516995	1201.52915	0.76543	0.00030733	1.4776	0.00059327	2.243	0.0009006	401.51756945658485	32.056	0.096539	32.056	32.008	32.104	0	1470	34	0.7320868	0.020422697	0.7320868	444.8836	0	12.410706						67	5	2	NaN	NaN	NaN	0.70361	1	16512	16512		7.8039	0.99635	1	6844.4			31648	636	18259	18759	25243	25243					-0.06354874864473459
YIPTAILWI	9	Unmodified	_YIPTAILWI_					0	0	0		nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	nc|ENSG00000058799|Q9Y548-2|YIPF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.3207855734001	2	545.320786	1088.62702	1.2393	0.00067583	-1.0263	-0.00055969	0.21298	0.00011614	545.3206441363367	36.832	0.16837	36.832	36.784	36.952	0	1263	46	0.85970795	0.027638733	0.85970795	348.70517	0	11.210541						196	8	3	NaN	NaN	NaN	0.24994	1	12349	12349		22.126	0	1	30551			31649	626	18260	18760	25244	25244					0.08624978522198035
YIPYSTRCF	9	Unmodified	_YIPYSTRCF_					0	0	0			REV__ENST00000457807.5_1_21:33873793-33887497:+|nuORF	REV__ENST00000457807.5_1_21:33873793-33887497:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.85143176706663	3	383.851432	1148.53247	1.912	0.00073391	-10.955	-0.0042051	-9.0431	-0.0034712	383.8476326449453	25.998	0.072399	25.998	25.998	26.07	0	1458	100	0.7395112	0.06116855	0.7395112	449.6304	0	37.19107						83	4	2	NaN	NaN	NaN	0.53206	1	14748	14748		4.7291	0.80096	1	6452.9	+		31650	10454	18261	18761	25245	25245					-0.035859032914686395
YIQASTYVQK	10	Unmodified	_YIQASTYVQK_					0	0	0		ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8165956525	2	600.816596	1199.61864	0.70394	0.00042294	-9.943	-0.0059739	-9.2391	-0.005551	600.8106583473867	31.186	0.21718	31.181	31.133	31.35	-0.0050716	1146	52	0.93142134	0.031188905	0.9299019	377.35562	0	12.635834						275	10	3	NaN	NaN	NaN	0.37681	1	15816	15816		24.562	5.3984	1	61912			31651	1899	18262	18762	25246	25246					0.02681379814907814
YIQEADLHRPL	11	Unmodified	_YIQEADLHRPL_					0	0	0			REV__ENST00000561116.5_1_15:49868913-49903415:-|nuORF	REV__ENST00000561116.5_1_15:49868913-49903415:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	677.85932613445	2	677.859326	1353.7041	1.407	0.00095372	-8.0692	-0.0054698	-6.6622	-0.0045161	678.3557326726913	23.85	0.21704	23.837	23.765	23.982	-0.013048	1086	70	0.9680805	0.042110324	0.9665611	391.6996	0	17.038483						345	10	3	NaN	NaN	NaN	0.4078	1	18710	18710		21.771	1.2577	1	36941	+		31652	10422	18263	18763	25247	25247					0.041395450005666135
YIQEADLHRPL	11	Unmodified						0	0	0			REV__ENST00000561116.5_1_15:49868913-49903415:-|nuORF	REV__ENST00000561116.5_1_15:49868913-49903415:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	677.859326	1353.7041	1.407	0.00095372	-8.0692	-0.0054698	-6.6622	-0.0045161	678.3557326726913	23.85	0.21704	23.837	23.765	23.982	-0.013048	1086	70	0.9680805	0.042110324	0.9665611	391.6996		17.038483	0.017415	-0.00051857	0.00015582	NaN	21.771	345	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36941	+		31653	10422	18263	18763							0.041395450005666135
YIQHMRSKEH	10	Unmodified	_YIQHMRSKEH_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.8300457662501	2	664.830046	1327.64554	3.26	0.0021674	-6.5862	-0.0043787	-3.3262	-0.0022113	664.8255598069053	25.177	0.048262	25.165	25.141	25.189	-0.012011	1047	31	0.99186665	0.018284142	0.9903472	401.40338	0	7.399536						28	3	2	NaN	NaN	NaN	0.76548	1	18361	18361		3.5698	0.30878	1	2061.5			31654	5087	18264	18764	25248	25248					-0.005178348455501691
YIQLDSLM	8	Unmodified	_YIQLDSLM_					0	0	0			REV__nc|ENSG00000158290|Q13620-3|CUL4B	REV__nc|ENSG00000158290|Q13620-3|CUL4B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4913951919002	1	982.491395	981.484119	1.6068	0.0015787	-1.1927	-0.0011719	0.4141	0.00040685	982.4901009250373	26.577	0.072378	26.566	26.566	26.639	-0.010645	240	52	1.4766881	0.030203342	1.4751687	299.8914	0	6.1338196						116	4	3	NaN	NaN	NaN	0.47456	1	7763	7763		32.453	3.7862	1	10559	+		31655	10163	18265	18765	25249	25249					-0.007363969313473717
YIRAVGVP	8	Unmodified	_YIRAVGVP_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.76089518105005	2	437.760895	873.507237	2.227	0.00097489	-3.5396	-0.0015495	-1.3126	-0.00057459	437.75946795290145	25.756	0.28959	25.745	25.648	25.938	-0.0116	1380	106	0.7876915	0.06474924	0.78617203	320.47607	0	26.343536						657	13	4	NaN	NaN	NaN	0.27293	1	5586	5586		44.247	5.329	1	352400			31656	6088	18266	18766	25250	25250					0.06542409968278662
YIRDFGMEKFR	11	Unmodified	_YIRDFGMEKFR_					0	0	0			REV__tr|U7SM78|U7SM78_FUSNUGlutamatemutasesigmasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	REV__tr|U7SM78|U7SM78_FUSNUGlutamatemutasesigmasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	731.36900375125	2	731.369004	1460.72345	1.8303	0.0013386	2.6266	0.001921	4.4568	0.0032596	731.3703913819829	23.561	0.19291	23.548	23.476	23.669	-0.013048	1044	91	0.99369496	0.05482906	0.9921755	401.76566	0	22.168182						347	9	3	NaN	NaN	NaN	0.73057	1	19449	19449		5.4499	1.8801	1	30911	+		31657	13431	18267	18767	25251	25251					0.0115217801981089
YIRDLVPLL	9	Unmodified	_YIRDLVPLL_					0	0	0			REV__ENSG00000115129|ENST00000238721|TP53I3	REV__ENSG00000115129|ENST00000238721|TP53I3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.33696695385	2	551.336967	1100.65938	-0.14924	-8.2281E-05	3.0161	0.0016629	2.8668	0.0015806	551.3385537736864	46.364	0.1438	46.374	46.302	46.446	0.0098152	1194	55	0.902037	0.033100247	0.9005176	365.8242	0	13.42392						188	7	3	NaN	NaN	NaN	0.21199	1	12544	12544		24.562	0.71157	1	14404	+		31658	9178	18268	18768	25252	25252					0.11307765925175772
YIRERLLPIF	10	Unmodified	_YIRERLLPIF_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	660.3953475000001	2	660.395348	1318.77614	1.5366	0.0010147	-2.6901	-0.0017765	-1.1536	-0.00076181	660.3934275181891	27.905	0.14478	27.905	27.857	28.001	0	1059	40	0.98455137	0.023778379	0.98455137	398.47052	0	9.623688						148	7	2	NaN	NaN	NaN	0.43797	1	19101	19101		27.296	11.474	1	20870	+		31659	8903	18269	18769	25253	25253					0.12950504144941988
YIRSCVVII	9	Unmodified	_YIRSCVVII_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.3098949236002	2	533.309895	1064.60524	1.0977	0.00058543	-0.4885	-0.00026052	0.60924	0.00032491	533.3100636740663	23.947	0.12057	23.934	23.886	24.006	-0.013048	1233	73	0.87812483	0.044186175	0.8766054	356.27563	0	17.927368						145	4	3	NaN	NaN	NaN	0.23112	1	11083	11083		23.334	0	1	21594			31660	701	18270	18770	25254	25254					0.07551850501977242
YIRYHERTH	9	Unmodified	_YIRYHERTH_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.5511441648	3	425.551144	1273.6316	1.657	0.00070512	-9.6082	-0.0040888	-7.9513	-0.0033837	425.8818829081513	16.758	0.071978	16.758	16.734	16.806	0	1404	28	0.77288127	0.016669631	0.77288127	469.37262	0	10.123535						44	4	2	NaN	NaN	NaN	0.62619	1	18292	18292		2.3381	0	1	4440.7			31661	2738	18271	18771	25255	25255					0.005732557176543196
YIRYYVCLMI	10	Unmodified	_YIRYYVCLMI_					0	0	0			REV__ENSG00000146399|ENST00000275216|TAAR1	REV__ENSG00000146399|ENST00000275216|TAAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.84324460195	2	668.843245	1335.67194	1.617	0.0010815	-4.8763	-0.0032615	-3.2593	-0.00218	668.839182063362	28.412	0.072376	28.412	28.388	28.46	0	1101	46	0.95892316	0.027484	0.95892316	388.0473	0	11.121948						96	4	2	NaN	NaN	NaN	0.7459	1	19344	19344		4.9097	0.94122	1	8362.7	+		31662	9942	18272	18772	25256	25256					0.017527180015349586
YISSDYVF	8	Unmodified	_YISSDYVF_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	993.4563898941001	1	993.45639	992.449113	2.09	0.0020763	1.2038	0.0011959	3.2937	0.0032722	993.4563495570119	26.577	0.12068	26.577	26.529	26.65	0	243	76	1.4749115	0.044426084	1.4749115	299.4847	0	9.020874						220	6	3	NaN	NaN	NaN	0.40747	1	8299	8299		36.036	2.338	1	29324			31663	518	18273	18773	25257	25257					-0.04741316467664092
YISVMQQDVTV	11	Unmodified	_YISVMQQDVTV_					0	0	0		XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant;ENSG00000047597|ENST00000378616|XK	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	428.21643929946663	3	428.216439	1281.62749	1.5743	0.00067412	-0.92169	-0.00039468	0.65258	0.00027944	428.21594426101353	17.261	0.14379	17.261	17.237	17.381	0	1500	43	0.71351165	0.026019335	0.71351165	433.28833	0	15.800537						167	7	4	NaN	NaN	NaN	0.54514	1	18451	18451		12.15	4.3456	1	16783			31664	550	18274	18774	25258	25258					-0.0020601461094429396
YITDSIDVVQG	11	Unmodified	_YITDSIDVVQG_					0	0	0			REV__ENSG00000101966|ENST00000371199|XIAP	REV__ENSG00000101966|ENST00000371199|XIAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.303518067	2	605.303518	1208.59248	0.54137	0.00032769	-8.01	-0.0048485	-7.4686	-0.0045208	605.2990909534858	33.769	0.12065	33.769	33.721	33.842	0	1143	115	0.9332562	0.06970507	0.9332562	378.06705	0	28.237915						236	6	3	NaN	NaN	NaN	0.70497	1	16690	16690		7.1304	0.26716	1	20063	+		31665	8872	18275	18775	25259	25259					-0.0034693414722823945
YITDSIDVVQG	11	Unmodified						0	0	0			REV__ENSG00000101966|ENST00000371199|XIAP	REV__ENSG00000101966|ENST00000371199|XIAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.303518	1208.59248	0.54137	0.00032769	-8.01	-0.0048485	-7.4686	-0.0045208	605.2990909534858	33.769	0.12065	33.769	33.721	33.842	0	1143	115	0.9332562	0.06970507	0.9332562	378.06705		28.237915	0.0015528	0.0013677	-0.014821	NaN	7.1304	236	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20063	+		31666	8872	18275	18775							-0.0034693414722823945
YITDSIDVVQG	11	Unmodified						0	0	0			REV__ENSG00000101966|ENST00000371199|XIAP	REV__ENSG00000101966|ENST00000371199|XIAP	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	605.303518	1208.59248	1.6973	0.0010274	-10.794	-0.0065339	-9.0972	-0.0055066	605.2973855440213	33.768	0.04829	33.766	33.742	33.79	-0.0018463	1092	28	0.9644182	0.016481519	0.96289873	390.69095		6.676758	-0.0015528	-0.0020033	0.014821	NaN	7.1304	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843.1	+		31667	8872	18275	18775							-0.0034693414722823945
YITEFYGYE	9	Unmodified	_YITEFYGYE_					0	0	0			REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	REV__tr|U7SLV8|U7SLV8_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01907PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.7609547605501	2	592.760955	1183.50736	0.97935	0.00058052	-2.4372	-0.0014447	-1.4578	-0.00086414	592.7578592526752	32.78	0.096497	32.78	32.756	32.852	0	1209	76	0.892844	0.04597509	0.892844	361.78235	0	18.62918						176	5	3	NaN	NaN	NaN	0.62619	1	15945	15945		4.4131	0	1	18708	+		31668	13426	18276	18776	25260	25260					-0.07705679613013672
YITELHSWI	9	Unmodified	_YITELHSWI_					0	0	0		DMD|p.D727Y|1|0.71|ENSG00000198947|chrX:32518121-32518121|C/A|missense_variant	DMD|p.D727Y|1|0.71|ENSG00000198947|chrX:32518121-32518121|C/A|missense_variant	DMD|p.D727Y|1|0.71|ENSG00000198947|chrX:32518121-32518121|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.3005814475501	2	581.300581	1160.58661	1.9533	0.0011355	-0.88221	-0.00051283	1.0711	0.00062265	581.3000534739699	28.001	0.12064	28.001	27.953	28.074	0	1029	100	1.0028336	0.0602957	1.0028336	406.44284	0	24.4375						278	6	3	NaN	NaN	NaN	0.67989	1	15176	15176		0.92586	0.23471	1	28629			31669	258	18277	18777	25261	25261					0.012740121317847297
YIVKEVWP	8	Unmodified	_YIVKEVWP_					0	0	0			REV__nc|ENSG00000116761|P32929-2|CTH	REV__nc|ENSG00000116761|P32929-2|CTH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2894854450001	2	517.289485	1032.56442	0.94654	0.00048964	0.57521	0.00029755	1.5217	0.00078718	517.2909521232338	34.13	0.12069	34.129	34.105	34.225	-0.0012474	1287	64	0.8449601	0.03871101	0.84344065	342.95575	0	15.712189						214	6	3	NaN	NaN	NaN	0.84692	1	9690	9690		1.4396	0	1	19885	+		31670	9227	18278	18778	25262	25262					0.04943832454000585
YIVPPPPCTI	10	Unmodified	_YIVPPPPCTI_					0	0	0			REV__nc|ENSG00000117322|P20023|CR2	REV__nc|ENSG00000117322|P20023|CR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.29645319735	2	550.296453	1098.57835	1.5719	0.00086499	-2.2189	-0.001221	-0.64702	-0.00035605	550.295009878503	16.901	0.16781	16.901	16.83	16.997	0	1245	82	0.87076044	0.049744427	0.87076044	353.1482	0	20.174469						289	8	3	NaN	NaN	NaN	0.40641	1	12796	12796		23.334	4.1708	1	35345	+		31671	9245	18279	18779	25263	25263					0.033007418907800457
YIVPPPPCTI	10	Unmodified						0	0	0			REV__nc|ENSG00000117322|P20023|CR2	REV__nc|ENSG00000117322|P20023|CR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	550.296453	1098.57835	1.5719	0.00086499	-2.2189	-0.001221	-0.64702	-0.00035605	550.295009878503	16.901	0.16781	16.901	16.83	16.997	0	1245	82	0.87076044	0.049744427	0.87076044	353.1482		20.174469	-0.087615	-0.0015447	-0.00016098	NaN	23.334	289	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35345	+		31672	9245	18279	18779							0.033007418907800457
YIVPPPPCTI	10	Unmodified						0	0	0			REV__nc|ENSG00000117322|P20023|CR2	REV__nc|ENSG00000117322|P20023|CR2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	550.296453	1098.57835	1.6389	0.00090188	-0.069594	-3.8297E-05	1.5693	0.00086358	550.2967787044353	17.09	0.21596	17.077	16.981	17.197	-0.013294	1242	82	0.87260187	0.04972291	0.8710824	353.89496		20.165741	0.087615	0.00082076	0.00016098	NaN	23.334	309	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26373	+		31673	9245	18279	18779							0.033007418907800457
YIVREPVQV	9	Unmodified	_YIVREPVQV_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.8163986872501	2	551.816399	1101.61824	1.5627	0.00086233	-3.8762	-0.002139	-2.3135	-0.0012766	551.813944451658	22.838	0.14471	22.838	22.79	22.935	0	1212	61	0.8910048	0.036793947	0.8910048	361.3462	0	14.921753						141	7	3	NaN	NaN	NaN	0.34922	1	12917	12917		15.822	0.80903	1	17059	+		31674	13168	18280	18780	25264	25264					0.07150004885693306
YIVSPRDVA	9	Unmodified	_YIVSPRDVA_					0	0	0		VPS41|p.V355A|1|0.33|ENSG00000006715|chr7:38772586-38772586|A/G|missense_variant	VPS41|p.V355A|1|0.33|ENSG00000006715|chr7:38772586-38772586|A/G|missense_variant	VPS41|p.V355A|1|0.33|ENSG00000006715|chr7:38772586-38772586|A/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	510.2796490402	2	510.279649	1018.54475	1.7408	0.0008883	-2.4042	-0.0012268	-0.66335	-0.00033849	510.2783175896349	20.887	0.33722	20.887	20.67	21.007	0	1305	58	0.83389086	0.03506595	0.83389086	338.52423	0	14.235291						402	15	4	NaN	NaN	NaN	0.25448	1	9324	9324		21.835	2.5503	1	84045			31675	14022	18281	18781	25265	25265					0.03621456443238458
YIWNNKESYL	10	Unmodified	_YIWNNKESYL_					0	0	0			REV__tr|U7T466|U7T466_FUSNURestrictionendonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00272PE=4SV=1	REV__tr|U7T466|U7T466_FUSNURestrictionendonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00272PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.3273275143001	2	665.327328	1328.6401	2.3248	0.0015468	-1.7397	-0.0011574	0.58517	0.00038933	665.3266694216246	26.191	0.16896	26.18	26.059	26.228	-0.011137	1107	46	0.9552588	0.027484	0.9537394	386.5854	0	11.122528						108	8	2	NaN	NaN	NaN	0.71736	1	18384	18384		6.8632	0.94343	1	9849.3	+		31676	13603	18282	18782	25266	25266					-0.011072351563825578
YIYVHFTDW	9	Unmodified	_YIYVHFTDW_					0	0	0			REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.2927564154501	2	622.292756	1242.57096	0.83562	0.00052	-0.64728	-0.0004028	0.18834	0.0001172	622.2925438033443	29.449	0.26541	29.442	29.297	29.562	-0.0070667	1110	106	0.95342636	0.0641709	0.9519069	386.11877	0	25.987946						775	12	4	NaN	NaN	NaN	0.31766	1	16844	16844		17.78	6.2319	1	121950	+		31677	11792	18283	18783	25267	25267					-0.04062274385296405
YKDLQSREE	9	Unmodified	_YKDLQSREE_					0	0	0		ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.8595319320999	3	389.859532	1166.55677	1.9955	0.00077798	-2.4346	-0.00094915	-0.43907	-0.00017118	389.8588858422524	11.62	0.047978	11.62	11.596	11.644	0	1533	31	0.6930556	0.018607497	0.6930556	421.3078	0	11.311462						40	3	2	NaN	NaN	NaN	0.63698	1	15355	15355		2.1026	0	1	2657			31678	5341	18284	18784	25268	25268					-0.01984971604247221
YKDMVGWY	8	Unmodified	_YKDMVGWY_					0	0	0			REV__ENSG00000180008|ENST00000555846|SOCS4	REV__ENSG00000180008|ENST00000555846|SOCS4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.2416779726501	2	531.241678	1060.4688	0.71148	0.00037797	3.2131	0.0017069	3.9246	0.0020849	531.744448322304	34.275	0.12046	34.274	34.249	34.37	-0.0012474	1290	46	0.84311575	0.027668655	0.8415963	342.08865	0	11.226379						141	6	4	NaN	NaN	NaN	0.78264	1	10860	10860		11.548	2.5865	1	12272	+		31679	10818	18285	18785	25269	25269					-0.05901263728537742
YKDVSLLVL	9	Unmodified	_YKDVSLLVL_					0	0	0			REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.3157001955001	2	525.3157	1048.61685	1.5071	0.00079168	-8.8033	-0.0046245	-7.2963	-0.0038329	525.3111911558736	27.736	0.24132	27.736	27.688	27.929	0	1224	91	0.883646	0.05520886	0.883646	358.58554	0	22.40387						458	11	4	NaN	NaN	NaN	0.04947	1	10587	10587		47.136	2.8334	1	61690	+		31680	13499	18286	18786	25270	25270					0.09448370796940253
YKDVSLLVL	9	Unmodified						0	0	0			REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	525.3157	1048.61685	1.5071	0.00079168	-8.8033	-0.0046245	-7.2963	-0.0038329	525.3111911558736	27.736	0.24132	27.736	27.688	27.929	0	1224	91	0.883646	0.05520886	0.883646	358.58554		22.40387	-0.055144	0.0008388	0.0062818	NaN	47.136	458	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61690	+		31681	13499	18286	18786							0.09448370796940253
YKDVSLLVL	9	Unmodified						0	0	0			REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	REV__tr|U7STP4|U7STP4_FUSNUAntitoxinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01138PE=3SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	525.3157	1048.61685	1.121	0.0005889	-13.141	-0.0069032	-12.02	-0.0063143	525.3083438762206	27.856	0.048311	27.846	27.846	27.895	-0.009552	1242	64	0.87260187	0.03866917	0.8710824	354.10382		15.692017	0.055144	-0.0037185	-0.0062818	NaN	47.136	87	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7608.5	+		31682	13499	18286	18786							0.09448370796940253
YKELYYWYNHH	11	Unmodified	_YKELYYWYNHH_					0	0	0		ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	539.2491308197001	3	539.249131	1614.72556	1.2948	0.00069821	-5.2601	-0.0028365	-3.9653	-0.0021383	539.2462432284938	24.309	0.12069	24.296	24.272	24.393	-0.012749	1341	31	0.8117308	0.018478692	0.81021136	491.84885	0	11.196747						121	6	3	NaN	NaN	NaN	0.77858	1	19739	19739		0.49077	0.11043	1	10754			31683	7784	18287	18787	25271	25271					-0.057210699707184176
YKELYYWYNHH	11	Unmodified						0	0	0		ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	ENST00000606851.5_1_6:22194461-22194572:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	539.249131	1614.72556	1.3868	0.00074782	-7.2994	-0.0039362	-5.9126	-0.0031884	539.5795959510178	24.237	0.14479	24.237	24.213	24.357	0	1341	34	0.8117308	0.020325482	0.8117308	491.84888		12.315765	-0.029672	-0.0020543	0.00075972	NaN	0.49077	126	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12061			31684	7784	18287	18787							-0.057210699707184176
YKGAFVFD	8	Unmodified	_YKGAFVFD_					0	0	0			REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	REV__tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.73708573375	2	473.737086	945.459619	1.4224	0.00067384	-6.4184	-0.0030406	-4.996	-0.0023668	473.7337672604571	16.014	0.095984	16.014	15.99	16.086	0	1356	43	0.8024889	0.02588147	0.8024889	326.11188	0	10.517609						95	5	2	NaN	NaN	NaN	0.80071	1	6954	6954		9.1232	0.16122	1	10348	+		31685	13579	18288	18788	25272	25272					-0.01529289022573721
YKHCQQKIKEL	11	Unmodified	_YKHCQQKIKEL_					0	0	0		ENST00000514642.1_1_1:43002254-43055163:+|nuORF;ENST00000471390.5_1_1:43002943-43047151:+|nuORF;nc|ENSG00000186409|Q5VVM6-2|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30;ENSG00000186409|ENST00000657597|CCDC30	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.38465381545	2	709.384654	1416.75475	0.95904	0.00068033	-10.909	-0.0077384	-9.9496	-0.0070581	709.3753474414001	27.422	0.14479	27.411	27.339	27.484	-0.010126	1053	43	0.9882094	0.025600612	0.98669	399.66412	0	10.35376						104	7	2	NaN	NaN	NaN	0.59385	1	19241	19241		14.425	5.463	1	8960.9			31686	5464	18289	18789	25273	25273					0.06304751053880864
YKHHTNTLL	9	Unmodified	_YKHHTNTLL_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.8038226282501	2	563.803823	1125.59309	1.4501	0.00081755	3.9729	0.0022399	5.423	0.0030575	563.8047495606584	21.609	0.14445	21.595	21.547	21.691	-0.013897	1194	73	0.902037	0.04413849	0.9005176	365.72397	0	17.8956						159	7	3	NaN	NaN	NaN	0.46215	1	13489	13489		11.17	1.1188	1	17968	+		31687	10274	18290	18790	25274	25274					0.03531950083151969
YKHHTNTLL	9	Unmodified						0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	563.803823	1125.59309	1.4501	0.00081755	3.9729	0.0022399	5.423	0.0030575	563.8047495606584	21.609	0.14445	21.595	21.547	21.691	-0.013897	1194	73	0.902037	0.04413849	0.9005176	365.72397		17.8956	0.0051657	-0.00046882	-0.00075972	NaN	11.17	159	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17968	+		31688	10274	18290	18790							0.03531950083151969
YKICSLRASH	10	Unmodified	_YKICSLRASH_					0	0	0		ENST00000478380.5_1_9:286487-312499:+|nuORF	ENST00000478380.5_1_9:286487-312499:+|nuORF	ENST00000478380.5_1_9:286487-312499:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3109575561001	2	589.310958	1176.60736	2.1923	0.0012919	-5.2252	-0.0030793	-3.0329	-0.0017873	589.3081859807716	17.933	0.07196	17.933	17.909	17.981	0	1176	31	0.9130621	0.018369138	0.9130621	369.9998	0	7.4437256						46	4	2	NaN	NaN	NaN	0.66626	1	15707	15707		10.36	0	1	3585.2			31689	7190	18291	18791	25275	25275					0.026122792397700323
YKIDQQVFL	9	Unmodified	_YKIDQQVFL_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	385.2132464967	3	385.213246	1152.61791	1.1525	0.00044396	2.0863	0.00080367	3.2388	0.0012476	385.21404574989833	20.549	0.096287	20.549	20.525	20.622	0	1458	31	0.7395112	0.018561065	0.7395112	449.61148	0	11.284851						66	5	2	NaN	NaN	NaN	0.31737	1	14897	14897		11.739	0.77375	1	20991	+		31690	8433	18292	18792	25276	25276					0.04770585165852026
YKILKKFH	8	Unmodified	_YKILKKFH_					0	0	0			REV__tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1	REV__tr|U7SWT4|U7SWT4_FUSNUHADhydrolase,familyIBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01166PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.8343944751501	2	538.834394	1075.65424	1.5126	0.00081502	-2.7432	-0.0014781	-1.2306	-0.00066309	539.3336873825898	21.151	0.21679	21.151	21.079	21.296	0	1242	40	0.87260187	0.02393806	0.87260187	353.9884	0	9.710968						186	10	4	NaN	NaN	NaN	0.78264	1	11810	11810		11.548	0.94349	1	22647	+		31691	13545	18293	18793	25277	25277					0.11943506853231156
YKKDLKDLKE	10	Unmodified	_YKKDLKDLKE_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.3664526747999	2	640.366453	1278.71835	1.2987	0.00083167	-9.8502	-0.0063077	-8.5514	-0.005476	640.3620361218977	41.376	0.12038	41.384	41.384	41.505	0.0082588	1230	76	0.8799654	0.04597509	0.878446	356.25787	0	18.61319						229	6	2	NaN	NaN	NaN	0.77594	1	17581	17581		1.5054	0	1	16984			31692	938	18294	18794	25278	25278					0.09014197428814441
YKKDLKDLKE	10	Unmodified						0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	640.366453	1278.71835	1.1749	0.00075238	-8.0642	-0.0051641	-6.8893	-0.0044117	640.3612870398122	41.474	0.096226	41.474	41.474	41.57	0	1236	64	0.876284	0.03863156	0.876284	354.76746		15.640137	0.04477	0.001241	-0.001081	NaN	1.5054	125	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8004.5			31693	938	18294	18794							0.09014197428814441
YKKDSEDNPQ	10	Unmodified	_YKKDSEDNPQ_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.28057428695	2	612.280574	1222.5466	1.5712	0.000962	-10.986	-0.0067262	-9.4143	-0.0057642	612.77470600393	30.004	0.48269	30.004	29.811	30.294	0	1197	115	0.9001988	0.06980294	0.9001988	364.62833	0	28.273895						690	21	3	NaN	NaN	NaN	0.66626	1	17035	17035		10.36	0.61416	1	161170			31694	250	18295	18795	25279	25279					-0.05577579329474247
YKKDSEDNPQ	10	Unmodified	_YKKDSEDNPQ_					0	0	0		DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.28057428695	2	612.280574	1222.5466	0.78132	0.00047839	-10.417	-0.006378	-9.6354	-0.0058996	612.7748070842893	30.052	0.33783	30.045	29.852	30.19	-0.0064106	1197	112	0.9001988	0.06796235	0.8986794	364.62833	0	27.52835						581	15	3	NaN	NaN	NaN	0.25724	1	16344	16344		30.61	11.492	1	134140			31695	250	18295	18795	25280	25280					-0.05577579329474247
YKLHGILC	8	Unmodified	_YKLHGILC_					0	0	0		nc|ENSG00000095564|O14981-2|BTAF1;ENSG00000095564|ENST00000265990|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	473.76258059024997	2	473.762581	945.510608	1.3918	0.00065937	-9.8673	-0.0046748	-8.4756	-0.0040154	473.7578885216982	13.252	0.096081	13.252	13.228	13.325	0	1548	49	0.6837494	0.029788136	0.6837494	277.85886	0	12.105133						158	5	3	NaN	NaN	NaN	0.69631	1	6965	6965		19.285	4.2718	1	31911			31696	1130	18296	18796	25281	25281					0.03567336750620598
YKLHGILC	8	Unmodified						0	0	0		nc|ENSG00000095564|O14981-2|BTAF1;ENSG00000095564|ENST00000265990|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	nc|ENSG00000095564|O14981-2|BTAF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	473.762581	945.510608	0.43617	0.00020664	-8.7761	-0.0041578	-8.3399	-0.0039511	473.75829414603083	13.397	0.23999	13.387	13.315	13.555	-0.010098	1548	49	0.6837494	0.029791355	0.68222994	277.85886		12.106476	0.067415	0.00068883	-0.00075972	NaN	19.285	218	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31920			31697	1130	18296	18796							0.03567336750620598
YKLKEGSSPHE	11	Unmodified	_YKLKEGSSPHE_					0	0	0			REV__ENST00000514642.1_1_1:43002254-43055163:+|nuORF	REV__ENST00000514642.1_1_1:43002254-43055163:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.8224093119001	2	637.822409	1273.63027	2.0513	0.0013084	-9.0353	-0.0057629	-6.984	-0.0044546	637.8165852995288	16.946	0.16782	16.933	16.861	17.029	-0.013294	1113	55	0.9515937	0.032975495	0.95007426	385.27335	0	13.35083						132	8	2	NaN	NaN	NaN	0.57257	1	17483	17483		15.822	2.3589	1	11309	+		31698	12572	18297	18797	25282	25282					0.004395768382437382
YKLQNLHN	8	Unmodified	_YKLQNLHN_					0	0	0			REV__nc|ENSG00000197302|Q7Z2F6-2|KRBOX5	REV__nc|ENSG00000197302|Q7Z2F6-2|KRBOX5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	515.27744070225	2	515.277441	1028.54033	1.9202	0.00098941	-4.6637	-0.0024031	-2.7436	-0.0014137	515.2775222543438	13.252	0.16815	13.252	13.228	13.397	0	1551	52	0.6818875	0.03164816	0.6818875	276.7815	0	12.846161						200	8	4	NaN	NaN	NaN	0.80692	1	9719	9719		8.2903	0	1	21223	+		31699	12642	18298	18798	25283	25283					0.027199920203202055
YKLRKIIS	8	Unmodified	_YKLRKIIS_					0	0	0		tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.83185178620005	2	510.831852	1019.64915	1.517	0.00077495	-8.6213	-0.004404	-7.1043	-0.0036291	510.8278798247367	20.044	0.12035	20.03	19.958	20.078	-0.014141	1260	34	0.8615505	0.020266235	0.8600311	349.74786	0	8.227112						87	6	2	NaN	NaN	NaN	0.78264	1	9178	9178		11.548	0.94349	1	6517.7			31700	13865	18299	18799	25284	25284					0.14011202990604943
YKLWTLGK	8	Unmodified	_YKLWTLGK_					0	0	0		tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5876788386	1	1008.58768	1007.5804	1.7761	0.0017913	4.5148	0.0045536	6.2909	0.0063449	1009.5939932055433	53.242	0.048088	53.242	53.218	53.266	0	102	61	1.5582114	0.035358667	1.5582114	316.3339	0	7.1781616						72	3	2	NaN	NaN	NaN	0.84455	1	8904	8904		2.7852	0.32367	1	5601.7			31701	13773	18300	18800	25285	25285					0.0769153869089223
YKMFWRFF	8	Unmodified	_YKMFWRFF_					0	0	0			REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.80477975595	2	612.80478	1223.59501	0.80137	0.00049108	2.0248	0.0012408	2.8262	0.0017319	612.8063955024268	24.743	0.072365	24.731	24.707	24.779	-0.012394	1002	94	1.0192708	0.056580484	1.0177513	412.8548	0	22.917877						177	4	3	NaN	NaN	NaN	0.84887	1	16371	16371		0.32989	0.054495	1	11692	+		31702	12080	18301	18801	25286	25286					-0.007847124326190169
YKMFWRFF	8	Unmodified						0	0	0			REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.80478	1223.59501	0.8663	0.00053087	1.6842	0.0010321	2.5505	0.001563	612.805562537546	24.719	0.096512	24.719	24.695	24.791	0	999	103	1.0210962	0.06204599	1.0210962	413.59418		25.131683	-0.005804	-0.00014798	0.0016724	NaN	0.32989	180	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11068	+		31703	12080	18301	18801							-0.007847124326190169
YKMFWRFF	8	Unmodified						0	0	0			REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	REV__ENST00000414118.2_1_7:102743878-102755668:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.80478	1223.59501	0.80137	0.00049108	2.0248	0.0012408	2.8262	0.0017319	612.8063955024268	24.743	0.072365	24.731	24.707	24.779	-0.012394	1002	94	1.0192708	0.056580484	1.0177513	412.8548		22.917877	0.005804	0.00026945	-0.0016724	NaN	0.32989	177	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11692	+		31704	12080	18301	18801							-0.007847124326190169
YKMIFEKPIK	10	Unmodified	_YKMIFEKPIK_					0	0	0			REV__nc|ENSG00000164113|Q96M93-3|ADAD1	REV__nc|ENSG00000164113|Q96M93-3|ADAD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.8728593211501	2	648.872859	1295.73117	1.1401	0.00073978	-9.3787	-0.0060856	-8.2386	-0.0053458	649.3664744422853	39.716	0.16881	39.722	39.673	39.842	0.0053368	1191	70	0.90387505	0.042292476	0.9023556	365.88644	0	17.119904						233	8	3	NaN	NaN	NaN	0.77513	1	17868	17868		1.7022	0.19679	1	19526	+		31705	10321	18302	18802	25287	25287					0.09512937287399836
YKNELLEKF	9	Unmodified	_YKNELLEKF_					0	0	0			REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	REV__tr|U7T0G5|U7T0G5_FUSNUGlucose-6-phosphateisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pgiPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.3215138549	2	592.321514	1182.62847	1.6029	0.00094944	-6.4209	-0.0038032	-4.8179	-0.0028538	592.3192880952349	28.122	0.12067	28.122	28.098	28.219	0	1167	76	0.91857195	0.045900643	0.91857195	372.2106	0	18.599213						134	6	2	NaN	NaN	NaN	0.2961	1	15931	15931		19.164	5.122	1	17892	+		31706	13565	18303	18803	25288	25288					0.04446567820264136
YKNKGDLY	8	Unmodified	_YKNKGDLY_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	500.75854945735	2	500.758549	999.502546	1.6127	0.00080758	7.4316	0.0037215	9.0444	0.004529	500.7625947543677	23.899	0.14472	23.899	23.851	23.995	0	1281	70	0.84864825	0.042425334	0.84864825	344.60254	0	17.227234						172	7	3	NaN	NaN	NaN	0.83582	1	8569	8569		4.4131	0	1	22051		+	31707	208	18304	18804	25289	25289					0.00277481034856919
YKQKYNLGF	9	Unmodified	_YKQKYNLGF_					0	0	0		tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8085736551501	2	580.808574	1159.60259	2.0251	0.0011762	-2.5297	-0.0014693	-0.5046	-0.00029307	580.8071297237534	20.021	0.24027	20.021	19.972	20.213	0	1170	52	0.91673553	0.031219184	0.91673553	371.55148	0	12.653076						309	11	4	NaN	NaN	NaN	0.39244	1	15129	15129		14.042	0.57854	1	60364			31708	13912	18305	18805	25290	25290					0.029177183686670105
YKQVIYMDDF	10	Unmodified	_YKQVIYMDDF_					0	0	0			REV__ENSG00000120440|ENST00000239587|TTLL2	REV__ENSG00000120440|ENST00000239587|TTLL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	441.2092847249333	3	441.209285	1320.60602	1.4525	0.00064085	3.5621	0.0015716	5.0146	0.0022125	441.54605334028344	21.898	0.072281	21.898	21.826	21.898	0	1413	37	0.7673241	0.02222979	0.7673241	465.8201	0	13.495056						62	4	3	NaN	NaN	NaN	0.77918	1	19117	19117		0.71611	0.084388	1	3215	+		31709	9313	18306	18806	25291	25291					-0.041453996396512593
YKTGGGGG	8	Unmodified	_YKTGGGGG_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3311298010002	1	696.33113	695.323853	1.6625	0.0011577	-1.3706	-0.00095438	0.29197	0.00020331	696.3302114483286	18.122	0.16799	18.108	18.084	18.252	-0.013948	1365	82	0.7969414	0.049960196	0.79542196	162.76517	0	10.203735						195	8	2	NaN	NaN	NaN	0.84945	1	3077	3077		0	0	1	25804	+		31710	10138	18307	18807	25292	25292					-0.035995638133613284
YKTGGGGG	8	Unmodified	_YKTGGGGG_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	696.3311298010002	1	696.33113	695.323853	1.06	0.00073812	-0.098957	-6.8907E-05	0.96106	0.00066921	696.3309442750742	14.332	0.2875	14.321	14.249	14.537	-0.011218	1362	76	0.79879075	0.046244442	0.7972713	163.14287	0	9.4448395						479	13	3	NaN	NaN	NaN	0.84945	1	3078	3078		0	0	1	89615	+		31711	10138	18307	18807	25293	25293					-0.035995638133613284
YKTGPFLGGI	10	Unmodified	_YKTGPFLGGI_					0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5775080828	1	1052.57751	1051.57023	1.467	0.0015441	-0.42052	-0.00044263	1.0464	0.0011015	1052.576703683617	31.187	0.02417	31.187	31.187	31.211	0	96	43	1.5617468	0.0247432	1.5617468	316.87256	0	5.020294						48	2	2	NaN	NaN	NaN	0.65442	1	10705	10705		11.17	0	1	4199.3	+		31712	9990	18308	18808	25294	25294					0.046509309656585174
YKVLLEKLLL	10	Unmodified	_YKVLLEKLLL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1231.8024226410002	1	1231.80242	1230.79515	1.7633	0.002172	-0.96634	-0.0011903	0.79697	0.00098171	1231.8025225255983	40.056	0.096161	40.056	40.056	40.152	0	54	58	1.5864743	0.033542633	1.5864743	321.282	0	6.792816						118	5	2	NaN	NaN	NaN	0.77928	1	17286	17286		0.69115	0	1	13871			31713	3598	18309	18809	25295	25295					0.1889804071602157
YKVLQEHMDL	10	Unmodified	_YKVLQEHMDL_					0	0	0		nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-7|SYNE1	nc|ENSG00000131018|Q8NF91-7|SYNE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3237305803501	2	638.323731	1274.63291	1.6411	0.0010476	7.8052	0.0049822	9.4463	0.0060298	638.331412196482	27.639	0.12063	27.639	27.567	27.688	0	1137	55	0.9369253	0.033007503	0.9369253	379.33124	0	13.363678						87	6	2	NaN	NaN	NaN	0.65442	1	18314	18314		11.17	2.2084	1	7851.2			31714	2686	18310	18810	25296	25296					0.006577089715392503
YKVMKNWGV	9	Unmodified	_YKVMKNWGV_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.79969437805	2	562.799694	1123.58484	2.2244	0.0012519	-9.2277	-0.0051933	-7.0033	-0.0039414	563.2961237318826	17.837	0.095934	17.837	17.789	17.885	0	1227	34	0.88180584	0.020242155	0.88180584	357.52917	0	8.207184						57	5	2	NaN	NaN	NaN	0.61413	1	13828	13828		4.9097	0.49665	1	4879.9			31715	2916	18311	18811	25297	25297					0.027986798421579806
YKVYAERIFFP	11	Unmodified	_YKVYAERIFFP_					0	0	0		ENST00000461261.1_1_3:48453511-48454330:-|nuORF;ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	ENST00000461261.1_1_3:48453511-48454330:-|nuORF	ENST00000461261.1_1_3:48453511-48454330:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	716.88481260345	2	716.884813	1431.75507	0.85521	0.00061309	-2.2626	-0.001622	-1.4074	-0.0010089	716.8832311214825	30.076	0.1689	30.07	30.07	30.238	-0.0064087	996	70	1.0229213	0.041997135	1.0214019	413.66083	0	16.983276						218	8	2	NaN	NaN	NaN	0.65755	1	19322	19322		10.244	4.5496	1	28962			31716	4285	18312	18812	25298	25298					0.05646494045390682
YKWKQLEVWFR	11	Unmodified	_YKWKQLEVWFR_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.93008577435	2	791.930086	1581.84562	1.4891	0.0011793	-1.4483	-0.0011469	0.040811	3.2319E-05	791.9293150200099	24.333	0.12065	24.333	24.309	24.43	0	900	49	1.0812234	0.029107213	1.0812234	436.84048	0	11.76001						180	6	4	NaN	NaN	NaN	0.76654	1	20727	20727		2.5994	1.094	1	20627	+		31717	8478	18313	18813	25299	25299					0.07796963093687737
YKWKQLEVWFR	11	Unmodified	_YKWKQLEVWFR_					0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.93008577435	2	791.930086	1581.84562	1.5072	0.0011936	-1.9919	-0.0015775	-0.48477	-0.00038391	791.9291919200208	24.478	0.2172	24.465	24.393	24.61	-0.012747	903	37	1.0794045	0.021828055	1.077885	436.10562	0	8.819061						199	10	4	NaN	NaN	NaN	0.74155	1	19713	19713		4.7291	4.213	1	18803	+		31718	8478	18313	18813	25300	25300					0.07796963093687737
YKWKQLEVWFR	11	Unmodified						0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	791.930086	1581.84562	1.4891	0.0011793	-1.4483	-0.0011469	0.040811	3.2319E-05	791.9293150200099	24.333	0.12065	24.333	24.309	24.43	0	900	49	1.0812234	0.029107213	1.0812234	436.84048		11.76001	-0.065902	0.00049105	0.0016692	NaN	4.7291	180	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20627	+		31719	8478	18313	18813							0.07796963093687737
YKWKQLEVWFR	11	Unmodified						0	0	0			REV__ENSG00000047936|ENST00000368507|ROS1	REV__ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	791.930086	1581.84562	1.5072	0.0011936	-1.9919	-0.0015775	-0.48477	-0.00038391	791.9291919200208	24.478	0.2172	24.465	24.393	24.61	-0.012747	903	37	1.0794045	0.021828055	1.077885	436.10562		8.819061	0.065902	-0.00037003	-0.0016692	NaN	4.7291	199	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18803	+		31720	8478	18313	18813							0.07796963093687737
YKYLAEQGVF	10	Unmodified	_YKYLAEQGVF_					0	0	0			REV__ACTRT1|p.C150Vfs*63|1|0.05|ENSG00000123165|chrX:128051760-128051760|G/-|frameshift_variant	REV__ACTRT1|p.C150Vfs*63|1|0.05|ENSG00000123165|chrX:128051760-128051760|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	609.3136888228	2	609.313689	1216.61282	0.93732	0.00057112	-3.2719	-0.0019936	-2.3345	-0.0014225	609.3115295453612	24.888	0.21713	24.875	24.803	25.02	-0.012394	1131	88	0.94059354	0.053221762	0.93907416	381.01108	0	21.558838						334	10	4	NaN	NaN	NaN	0.70677	1	16230	16230		7.5876	1.3374	1	41962	+		31721	8123	18314	18814	25301	25301					0.013182813032244667
YKYLFNFRG	9	Unmodified	_YKYLFNFRG_					0	0	0		ENST00000486607.5_1_3:119198882-119211282:+|nuORF;ENSG00000163389|ENST00000295588|POGLUT1	ENST00000486607.5_1_3:119198882-119211282:+|nuORF	ENST00000486607.5_1_3:119198882-119211282:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	403.2134693973667	3	403.213469	1206.61858	1.3474	0.00054328	-4.4775	-0.0018054	-3.1302	-0.0012621	403.21187565393416	11.908	0.14414	11.908	11.86	12.004	0	1452	52	0.74322224	0.031538427	0.74322224	451.62897	0	19.164734						218	7	4	NaN	NaN	NaN	0.66196	1	16652	16652		2.5994	1.5594	1	31433			31722	4225	18315	18815	25302	25302					0.023534246055533004
YLAAGASGSLD	11	Unmodified	_YLAAGASGSLD_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.7509213905	2	512.750921	1023.48729	1.626	0.00083373	-8.2711	-0.004241	-6.6451	-0.0034073	512.746459730167	23.127	0.096306	23.114	23.041	23.138	-0.013296	1311	55	0.83019954	0.033225775	0.8286801	337.00403	0	13.487366						78	5	2	NaN	NaN	NaN	0.7072	1	9301	9301		6.9844	0.12115	1	7160			31723	2470	18316	18816	25303	25303					-0.023514305530056845
YLAETTIIQ	9	Unmodified	_YLAETTIIQ_					0	0	0			REV__nc|ENSG00000158486|Q8TD57-3|DNAH3	REV__nc|ENSG00000158486|Q8TD57-3|DNAH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.2871397213	2	526.28714	1050.55973	0.91099	0.00047944	6.9491	0.0036572	7.86	0.0041366	526.7916837751945	35.289	0.072403	35.289	35.265	35.337	0	1293	25	0.84127116	0.014755845	0.84127116	341.3815	0	5.987793						53	4	3	NaN	NaN	NaN	0.56671	1	10657	10657		6.8632	2.4501	1	2022.8	+		31724	10167	18317	18817	25304	25304					0.03646903520575506
YLAGLSPM	8	Unmodified	_YLAGLSPM_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4331520315001	1	851.433152	850.425876	1.6294	0.0013874	-2.9392	-0.0025025	-1.3098	-0.0011152	851.4296940379999	27.639	0.14475	27.639	27.567	27.712	0	465	58	1.3429124	0.03401625	1.3429124	273.305	0	6.9228516						126	7	2	NaN	NaN	NaN	0.55881	1	5391	5391		27.861	0.071837	1	10731	+		31725	10760	18318	18818	25305	25305					-0.005320337859757274
YLAGLSPM	8	Unmodified						0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	851.433152	850.425876	1.6294	0.0013874	-2.9392	-0.0025025	-1.3098	-0.0011152	851.4296940379999	27.639	0.14475	27.639	27.567	27.712	0	465	58	1.3429124	0.03401625	1.3429124	273.305		6.9228516	0	0	0	NaN	27.861	126	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10731	+		31726	10760	18318	18818							-0.005320337859757274
YLAQGGGG	8	Unmodified	_YLAQGGGG_					0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	722.3467798652002	1	722.34678	721.339503	2.0665	0.0014927	7.4768	0.0054009	9.5433	0.0068936	722.3527124535265	26.191	0.072386	26.191	26.167	26.239	0	1053	40	0.9882094	0.023773253	0.9882094	201.68858	0	4.8520203						40	4	2	NaN	NaN	NaN	0.84207	1	3612	3612		3.5732	0.41988	1	2410.5	+		31727	10226	18319	18819	25306	25306					-0.03231277296310964
YLAQGGGG	8	Unmodified						0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	722.34678	721.339503	2.0665	0.0014927	7.4768	0.0054009	9.5433	0.0068936	722.3527124535265	26.191	0.072386	26.191	26.167	26.239	0	1053	40	0.9882094	0.023773253	0.9882094	201.68858		4.8520203	0	0	0	NaN	3.5732	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410.5	+		31728	10226	18319	18819							-0.03231277296310964
YLCEMRGR	8	Unmodified	_YLCEMRGR_					0	0	0		nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-2|OBSL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.2442290491001	2	514.244229	1026.47391	1.7079	0.00087827	-5.1297	-0.0026379	-3.4219	-0.0017597	514.7432697025025	34.734	0.096409	34.734	34.71	34.806	0	1296	43	0.8394264	0.025831044	0.8394264	340.73633	0	10.4852295						160	5	5	NaN	NaN	NaN	0.83582	1	9619	9619		4.4131	0	1	9540.6			31729	2391	18320	18820	25307	25307					-0.03827283137570703
YLCLCSGP	8	Unmodified	_YLCLCSGP_					0	0	0			REV__nc|ENSG00000144045|Q8TE96-2|DQX1	REV__nc|ENSG00000144045|Q8TE96-2|DQX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.3739225931001	1	855.373923	854.366646	1.061	0.00090754	-3.7261	-0.0031872	-2.6651	-0.0022796	855.370672300189	34.588	0.21695	34.587	34.539	34.756	-0.0006485	411	70	1.3751161	0.041116238	1.3735967	279.8384	0	8.367218						276	10	3	NaN	NaN	NaN	0.81214	1	5313	5313		7.5902	0.72703	1	38302	+		31730	9890	18321	18821	25308	25308					-0.06636253071803822
YLDKDLEI	8	Unmodified	_YLDKDLEI_					0	0	0			REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1008.5248038102999	1	1008.5248	1007.51753	1.7898	0.0018051	-2.5384	-0.0025601	-0.7486	-0.00075498	1008.5227442982599	28.677	0.28957	28.677	28.605	28.894	0	201	106	1.4997677	0.06209767	1.4997677	304.46945	0	12.606506						622	13	4	NaN	NaN	NaN	0.16655	1	8882	8882		52.624	0	1	92954	+		31731	8667	18322	18822	25309	25309					0.014069281121805943
YLDKDLEI	8	Unmodified						0	0	0			REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1008.5248	1007.51753	1.7898	0.0018051	-2.5384	-0.0025601	-0.7486	-0.00075498	1008.5227442982599	28.677	0.28957	28.677	28.605	28.894	0	201	106	1.4997677	0.06209767	1.4997677	304.46945		12.606506	0.0045442	0.00014747	-0.0001273	NaN	52.624	622	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92954	+		31732	8667	18322	18822							0.014069281121805943
YLDKDLEI	8	Unmodified						0	0	0			REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	REV__nc|ENSG00000082014|Q6STE5-2|SMARCD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1008.5248	1007.51753	1.4446	0.001457	-2.7836	-0.0028074	-1.339	-0.0013504	1008.5220476367452	28.676	0.28955	28.668	28.596	28.885	-0.0083504	198	91	1.5015416	0.053229332	1.5000222	304.82962		10.806152	-0.0045442	-9.9819E-05	0.0001273	NaN	52.624	546	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82024	+		31733	8667	18322	18822							0.014069281121805943
YLDLFITFI	9	Unmodified	_YLDLFITFI_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.81807570895	2	572.818076	1143.6216	0.77183	0.00044212	8.3647	0.0047915	9.1365	0.0052336	572.8237693577184	29.883	0.12064	29.876	29.828	29.948	-0.0070667	1167	64	0.91857195	0.038569033	0.9170525	372.35687	0	15.6345215						148	6	2	NaN	NaN	NaN	0.55027	1	14115	14115		7.5404	0	1	22955			31734	5639	18323	18823	25310	25310					0.05553254939695762
YLDLSLQELS	10	Unmodified	_YLDLSLQELS_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.8084362694001	2	590.808436	1179.60232	1.1481	0.0006783	-7.4935	-0.0044272	-6.3454	-0.0037489	590.8032580902101	24.767	0.31368	24.755	24.682	24.996	-0.012392	1176	112	0.9130621	0.067999065	0.91154265	369.98892	0	27.554443						343	14	2	NaN	NaN	NaN	0.25724	1	15233	15233		30.61	2.8213	1	87362	+		31735	8150	18324	18824	25311	25311					0.01970253858144133
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.5302235392	1	1025.53022	1024.52295	1.9213	0.0019703	-1.011	-0.0010368	0.91025	0.00093349	1025.5302077559961	29.208	0.072414	29.208	29.16	29.232	0	198	64	1.5015416	0.037250638	1.5015416	304.7613	0	7.560608						169	4	3	NaN	NaN	NaN	0.028349	1	9554	9554		61.271	14.135	1	32197			31736	4583	18325	18825	25312	25312					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1025.5302235392	1	1025.53022	1024.52295	1.2524	0.0012844	-2.8384	-0.0029108	-1.586	-0.0016264	1025.5270546881882	29.207	0.096571	29.2	29.151	29.248	-0.0077209	195	67	1.5033154	0.039022446	1.501796	305.12134	0	7.920227						180	5	3	NaN	NaN	NaN	0.024221	1	9372	9372		66.656	37.058	1	33302			31737	4583	18325	18825	25313	25313					0.011666516946661432
YLDNRQEW	8	Unmodified	_YLDNRQEW_					0	0	0			REV__nc|ENSG00000071794|Q14527-2|HLTF	REV__nc|ENSG00000071794|Q14527-2|HLTF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.2619876033001	2	562.261988	1122.50942	2.1333	0.0011994	3.5956	0.0020217	5.7289	0.0032211	562.2624727853785	25.37	0.048248	25.358	25.334	25.382	-0.012011	1221	40	0.885486	0.02391994	0.88396657	359.02542	0	9.698456						60	3	2	NaN	NaN	NaN	0.80071	1	13370	13370		9.1232	3.429	1	5478.9	+		31738	8581	18326	18826	25314	25314					-0.04693206084562007
YLDNRQEW	8	Unmodified						0	0	0			REV__nc|ENSG00000071794|Q14527-2|HLTF	REV__nc|ENSG00000071794|Q14527-2|HLTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	562.261988	1122.50942	1.9259	0.0010829	4.0374	0.0022701	5.9633	0.0033529	562.2637609489028	25.322	0.0965	25.322	25.298	25.395	0	1221	43	0.885486	0.025758564	0.885486	359.02542		10.443939	-0.017983	0.00023437	0.00075972	NaN	9.1232	86	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8425	+		31739	8581	18326	18826							-0.04693206084562007
YLDNRQEW	8	Unmodified						0	0	0			REV__nc|ENSG00000071794|Q14527-2|HLTF	REV__nc|ENSG00000071794|Q14527-2|HLTF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	562.261988	1122.50942	2.1333	0.0011994	3.5956	0.0020217	5.7289	0.0032211	562.2624727853785	25.37	0.048248	25.358	25.334	25.382	-0.012011	1221	40	0.885486	0.02391994	0.88396657	359.02542		9.698456	0.017983	-0.00026237	-0.00075972	NaN	9.1232	60	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5478.9	+		31740	8581	18326	18826							-0.04693206084562007
YLDPPGPLLAD	11	Unmodified	_YLDPPGPLLAD_					0	0	0			REV__ENSG00000135625|ENST00000436467|EGR4	REV__ENSG00000135625|ENST00000436467|EGR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8056966152001	2	585.805697	1169.59684	2.8334	0.0016598	-7.3802	-0.0043234	-4.5468	-0.0026635	586.3035915251986	18.508	0.047949	18.508	18.46	18.508	0	1182	46	0.9093879	0.027543366	0.9093879	368.53647	0	11.16217						36	3	2	NaN	NaN	NaN	0.73455	1	15471	15471		5.1889	0	1	2056.2	+		31741	9626	18327	18827	25315	25315					0.01882575066338177
YLDPPGPLLAD	11	Unmodified						0	0	0			REV__ENSG00000135625|ENST00000436467|EGR4	REV__ENSG00000135625|ENST00000436467|EGR4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	585.805697	1169.59684	2.8334	0.0016598	-7.3802	-0.0043234	-4.5468	-0.0026635	586.3035915251986	18.508	0.047949	18.508	18.46	18.508	0	1182	46	0.9093879	0.027543366	0.9093879	368.53647		11.16217	0	0	0	NaN	5.1889	36	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2056.2	+		31742	9626	18327	18827							0.01882575066338177
YLDRVRSL	8	Unmodified	_YLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.29309076645	2	511.293091	1020.57163	2.4774	0.0012667	-2.0214	-0.0010335	0.45601	0.00023316	511.2922331317481	17.909	0.19186	17.909	17.885	18.077	0	1488	79	0.7209441	0.04829538	0.7209441	292.6649	0	19.605347						358	9	4	NaN	NaN	NaN	0.6117	1	9403	9403		24.562	0	1	96834			31743	1791;7535	18328	18828	25316	25316					0.06216565054421608
YLDTLFLSN	9	Unmodified	_YLDTLFLSN_					0	0	0			REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2793146892001	2	543.279315	1084.54408	1.0837	0.00058878	-1.4152	-0.00076885	-0.33145	-0.00018007	543.2788782941975	34.13	0.1931	34.129	34.08	34.274	-0.0012474	1209	61	0.892844	0.036793947	0.8913246	362.16248	0	14.924652						256	9	4	NaN	NaN	NaN	0.20577	1	11850	11850		24.961	4.4056	1	42888	+		31744	9033	18329	18829	25317	25317					0.005186170035358373
YLDTLFLSN	9	Unmodified						0	0	0			REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.279315	1084.54408	1.1026	0.00059899	-1.6466	-0.00089458	-0.54408	-0.00029559	543.2786595371502	34.131	0.28944	34.131	34.083	34.372	0	1212	52	0.8910048	0.031273186	0.8910048	361.41644		12.685272	0.001238	-9.2707E-05	-0.00015988	NaN	24.961	228	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41521	+		31745	9033	18329	18829							0.005186170035358373
YLDTLFLSN	9	Unmodified						0	0	0			REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	REV__ENST00000494824.5_1_2:242255375-242275396:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.279315	1084.54408	1.0837	0.00058878	-1.4152	-0.00076885	-0.33145	-0.00018007	543.2788782941975	34.13	0.1931	34.129	34.08	34.274	-0.0012474	1209	61	0.892844	0.036793947	0.8913246	362.16248		14.924652	-0.001238	0.00015876	0.00015988	NaN	24.961	256	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42888	+		31746	9033	18329	18829							0.005186170035358373
YLDTYTDNF	9	Unmodified	_YLDTYTDNF_					0	0	0		tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	tr|U7SL44|U7SL44_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01976PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.24821152605	2	576.248212	1150.48187	0.9063	0.00052226	-4.3958	-0.0025331	-3.4895	-0.0020108	576.2440922012221	31.115	0.0965	31.115	31.091	31.187	0	1242	79	0.87260187	0.04786837	0.87260187	353.69714	0	19.402771						199	4	4	NaN	NaN	NaN	0.45297	1	14818	14818		11.548	1.8025	1	20400			31747	13761	18330	18830	25318	25318					-0.08735154135479206
YLECEVFR	8	Unmodified	_YLECEVFR_					0	0	0		nc|ENSG00000137959|Q53G44-2|IFI44L;ENST00000486882.5_1_1:79093429-79094083:+|nuORF;IFI44L|p.N215Qfs*20|1|0.24|ENSG00000137959|chr1:78629827-78629828|-/T|frameshift_variant;ENSG00000137959|ENST00000370751|IFI44L	nc|ENSG00000137959|Q53G44-2|IFI44L	nc|ENSG00000137959|Q53G44-2|IFI44L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.7524098344501	2	529.75241	1057.49027	1.3262	0.00070255	7.5832	0.0040172	8.9094	0.0047198	529.756326535062	22.934	0.048246	22.921	22.921	22.969	-0.01354	1290	55	0.84311575	0.033196986	0.8415963	342.10098	0	13.46994						85	3	2	NaN	NaN	NaN	0.81251	1	10755	10755		7.5404	1.45	1	7454.7			31748	3122	18331	18831	25319	25319					-0.036178786998334544
YLEDQIMS	8	Unmodified	_YLEDQIMS_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	499.72860038715	2	499.7286	997.442648	1.0256	0.00051251	2.7877	0.0013931	3.8133	0.0019056	500.23075023984285	29.038	0.31373	29.031	28.934	29.248	-0.0077229	1341	85	0.8117308	0.05176294	0.81021136	329.62106	0	21.01944						548	14	3	NaN	NaN	NaN	0.81251	1	8291	8291		7.5404	1.2902	1	80364			31749	5955	18332	18832	25320	25320					-0.05617577690691178
YLEFSSSYWMS	11	Unmodified	_YLEFSSSYWMS_					0	0	0		ENST00000400206.7_2_22:38757512-38776954:-|nuORF	ENST00000400206.7_2_22:38757512-38776954:-|nuORF	ENST00000400206.7_2_22:38757512-38776954:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.2973784441	2	700.297378	1398.5802	1.5093	0.001057	-9.613	-0.0067319	-8.1036	-0.005675	700.7912483517578	24.429	0.072418	24.417	24.393	24.465	-0.012749	1050	31	0.9900381	0.018288136	0.9885187	400.454	0	7.3972473						47	4	2	NaN	NaN	NaN	0.73455	1	19112	19112		5.1889	1.2204	1	3797.6			31750	6827	18333	18833	25321	25321					-0.10314293881947378
YLEGALVVV	9	Unmodified	_YLEGALVVV_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5557100082001	1	962.55571	961.548434	0.82551	0.0007946	2.3714	0.0022826	3.1969	0.0030772	962.5574691310386	31.501	0.072395	31.501	31.477	31.549	0	210	40	1.4944444	0.023072243	1.4944444	303.5845	0	4.68692						61	4	2	NaN	NaN	NaN	0.56671	1	7382	7382		6.8632	2.4501	1	4461	+		31751	10808	18334	18834	25322	25322					0.06612126217089553
YLEGALVVV	9	Unmodified						0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	962.55571	961.548434	0.82551	0.0007946	2.3714	0.0022826	3.1969	0.0030772	962.5574691310386	31.501	0.072395	31.501	31.477	31.549	0	210	40	1.4944444	0.023072243	1.4944444	303.5845		4.68692	0.0027401	0.0006057	0.00075972	NaN	6.8632	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4461	+		31752	10808	18334	18834							0.06612126217089553
YLEGALVVV	9	Unmodified						0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.55571	961.548434	1.4036	0.001351	1.1485	0.0011055	2.5521	0.0024565	962.557392851014	31.5	0.072401	31.495	31.471	31.544	-0.0044174	210	34	1.4944444	0.019520521	1.4929249	303.5845		3.9654236	-0.0027401	-0.00057143	-0.00075972	NaN	6.8632	55	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3691.1	+		31753	10808	18334	18834							0.06612126217089553
YLEKFYGLE	9	Unmodified	_YLEKFYGLE_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.2949647534	2	581.294965	1160.57538	1.3694	0.00079601	-1.7112	-0.00099471	-0.34182	-0.0001987	581.2944279662291	35.698	0.072327	35.698	35.65	35.722	0.00053024	1182	28	0.9093879	0.016534925	0.90786844	368.56985	0	6.701538						53	4	2	NaN	NaN	NaN	0.49672	1	14654	14654		9.746	2.8828	1	4482.9			31754	6152	18335	18835	25323	25323					0.0015119003760446503
YLEKFYGLE	9	Unmodified						0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	581.294965	1160.57538	1.3876	0.00080658	-1.022	-0.0005941	0.36552	0.00021247	581.2942554133393	35.699	0.096451	35.699	35.651	35.747	0	1179	28	0.9112251	0.016536713	0.9112251	369.31445		6.70224	0.00045802	0.00036326	0.0016783	NaN	9.746	67	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3709.1			31755	6152	18335	18835							0.0015119003760446503
YLELHASGRF	10	Unmodified	_YLELHASGRF_					0	0	0		ENSG00000175077|ENST00000312295|RTP1	ENSG00000175077|ENST00000312295|RTP1	ENSG00000175077|ENST00000312295|RTP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.2084954697999	3	398.208495	1191.60366	1.514	0.0006029	0.68117	0.00027125	2.1952	0.00087415	398.2084344016377	19.108	0.11993	19.108	19.084	19.204	0	1464	34	0.73579943	0.020416021	0.73579943	447.18195	0	12.407837						46	6	2	NaN	NaN	NaN	0.74182	1	16201	16201		2.4611	0	1	3409.4			31756	4975	18336	18836	25324	25324					0.015519327375386638
YLELSEQECE	10	Unmodified	_YLELSEQECE_					0	0	0		nc|ENSG00000178209|Q15149-5|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	nc|ENSG00000178209|Q15149-5|PLEC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.8446711230334	3	414.844671	1241.51218	1.0473	0.00043448	-6.5413	-0.0027136	-5.494	-0.0022791	415.1758048021627	37.145	0.26508	37.145	37.072	37.338	0	1461	67	0.7376554	0.04085207	0.7376554	448.10397	0	24.816406						249	12	4	NaN	NaN	NaN	0.65442	1	17556	17556		8.9416	5.9715	1	17489			31757	7990	18337	18837	25325	25325					-0.09891163532574865
YLENEEMCP	9	Unmodified	_YLENEEMCP_					0	0	0			REV__ENSG00000147443|ENST00000276420|DOK2	REV__ENSG00000147443|ENST00000276420|DOK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.222824905	2	564.222825	1126.4311	1.4857	0.00083826	-0.2493	-0.00014066	1.2364	0.0006976	564.2229190026712	34.203	0.072342	34.203	34.155	34.228	0	1218	64	0.8873258	0.038627446	0.8873258	359.7562	0	15.661041						84	4	4	NaN	NaN	NaN	0.6634	1	13937	13937		0.79988	0	1	5643	+		31758	9963	18338	18838	25326	25326					-0.1270614277632376
YLEPLALLTE	10	Unmodified	_YLEPLALLTE_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.3237221928499	2	581.323722	1160.63289	1.2469	0.00072483	-1.5426	-0.00089675	-0.29573	-0.00017192	581.322714917058	28.604	0.12063	28.596	28.572	28.692	-0.0083504	1026	106	1.0046607	0.06394303	1.0031413	407.1832	0	25.915741						201	6	2	NaN	NaN	NaN	0.78213	1	14667	14667		0	0	1	16646	+		31759	9263	18339	18839	25327	25327					0.05900032243152964
YLEYGAAVL	9	Unmodified	_YLEYGAAVL_					0	0	0		ENST00000394964.3_1_14:63416779-63568536:-|nuORF;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5	ENST00000394964.3_1_14:63416779-63568536:-|nuORF	ENST00000394964.3_1_14:63416779-63568536:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5193245019001	1	998.519325	997.512048	1.4825	0.0014803	0.22841	0.00022807	1.7109	0.0017083	998.5198635618727	30.896	0.19311	30.891	30.866	31.06	-0.0057545	210	61	1.4944444	0.03550136	1.4929249	303.42984	0	7.2081604						265	9	2	NaN	NaN	NaN	0.11467	1	8300	8300		33.698	0	1	77896			31760	3245	18340	18840	25328	25328					0.013192493203860067
YLEYNLIKEI	10	Unmodified	_YLEYNLIKEI_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.3555536375001	2	649.355554	1296.69655	0.85835	0.00055737	-2.8396	-0.0018439	-1.9812	-0.0012865	649.3525342075245	40.176	0.14431	40.176	40.128	40.272	0	1236	88	0.876284	0.053359926	0.876284	354.71487	0	21.599792						216	7	2	NaN	NaN	NaN	0.76892	1	18723	18723		3.2116	0	1	20778			31761	5155	18341	18841	25329	25329					0.060073926802715505
YLFADKKKP	9	Unmodified	_YLFADKKKP_					0	0	0			REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.3213168896501	2	555.321317	1108.62808	1.057	0.00058699	-10.647	-0.0059123	-9.5897	-0.0053253	555.3154629189576	27.422	0.21718	27.411	27.242	27.46	-0.010126	1191	85	0.90387505	0.05148375	0.9023556	366.53708	0	20.877563						343	10	3	NaN	NaN	NaN	0.47587	1	12864	12864		10.605	0	1	33578	+		31762	9340	18342	18842	25330	25330					0.07811192891085739
YLFLLPIVF	9	Unmodified	_YLFLLPIVF_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	562.8413538400001	2	562.841354	1123.66815	1.248	0.00070245	-5.7518	-0.0032374	-4.5038	-0.0025349	562.8384212901357	27.639	0.072378	27.629	27.605	27.677	-0.009552	1218	52	0.8873258	0.03126645	0.8858064	359.7669	0	12.676971						74	4	3	NaN	NaN	NaN	0.36886	1	13418	13418		15.013	0	1	7888.1			31763	823	18343	18843	25331	25331					0.11126739561655086
YLFLLPIVF	9	Unmodified						0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	562.841354	1123.66815	1.6302	0.00091752	-8.1575	-0.0045914	-6.5274	-0.0036739	562.8368136648625	27.615	0.072367	27.615	27.591	27.664	0	1218	52	0.8873258	0.03126645	0.8873258	359.76694		12.677002	-0.0068869	-0.0005592	0.00075972	NaN	15.013	98	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9352			31764	823	18343	18843							0.11126739561655086
YLFNFLFP	8	Unmodified	_YLFNFLFP_					0	0	0			REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1060.5502306997998	1	1060.55023	1059.54295	1.1193	0.0011871	-9.6498	-0.010234	-8.5305	-0.009047	1060.5415519675157	35.048	0.14479	35.048	34.999	35.144	0	159	124	1.5245869	0.07256591	1.5245869	309.30286	0	14.721893						182	7	2	NaN	NaN	NaN	0.80071	1	11067	11067		9.1232	0	1	15736	+		31765	9705	18344	18844	25332	25332					0.015564474252641958
YLFNFLFP	8	Unmodified						0	0	0			REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1060.55023	1059.54295	1.1193	0.0011871	-9.6498	-0.010234	-8.5305	-0.009047	1060.5415519675157	35.048	0.14479	35.048	34.999	35.144	0	159	124	1.5245869	0.07256591	1.5245869	309.30286		14.721893	0.00073672	0.0014728	0.00075972	NaN	9.1232	182	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15736	+		31766	9705	18344	18844							0.015564474252641958
YLFNFLFP	8	Unmodified						0	0	0			REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1060.55023	1059.54295	1.2666	0.0013433	-11.868	-0.012587	-10.602	-0.011243	1060.5384835192185	35.046	0.12066	35.046	34.998	35.119	-4.5776E-05	159	76	1.5245869	0.04428029	1.5230675	309.30286		8.983429	-0.00073672	-0.00087983	-0.00075972	NaN	9.1232	192	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16519	+		31767	9705	18344	18844							0.015564474252641958
YLFNQEKV	8	Unmodified	_YLFNQEKV_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.5411225765	1	1040.54112	1039.53385	1.3136	0.0013669	3.441	0.0035805	4.7546	0.0049473	1040.5439567490741	30.825	0.19303	30.825	30.777	30.97	0	141	145	1.5352125	0.08508575	1.5352125	311.53552	0	17.266205						461	9	3	NaN	NaN	NaN	0.45125	1	10199	10199		33.698	0	1	159020	+		31768	8373	18345	18845	25333	25333					0.01566054068939593
YLFPETEFI	9	Unmodified	_YLFPETEFI_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.7895152347501	2	579.789515	1157.56448	0.8351	0.00048418	7.8694	0.0045626	8.7046	0.0050468	580.2952990853175	31.958	0.12064	31.954	31.93	32.051	-0.0037613	1200	64	0.89836043	0.03861904	0.896841	364.11157	0	15.652557						114	6	2	NaN	NaN	NaN	0.58159	1	14566	14566		6.2502	0.55606	1	9904.5			31769	2920	18346	18846	25334	25334					-0.008002123366622982
YLFWVPFL	8	Unmodified	_YLFWVPFL_					0	0	0			REV__ENSG00000100243|ENST00000352397|CYB5R3	REV__ENSG00000100243|ENST00000352397|CYB5R3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	542.7969463363501	2	542.796946	1083.57934	1.4078	0.00076418	-3.5574	-0.001931	-2.1496	-0.0011668	542.7950797091094	24.574	0.19296	24.562	24.489	24.682	-0.012392	1236	79	0.876284	0.047858	0.8747646	355.44928	0	19.41275						389	9	5	NaN	NaN	NaN	0.17057	1	11822	11822		52.308	5.1721	1	81426	+		31770	8798	18347	18847	25335	25335					0.04089324321989807
YLGAIREDRE	10	Unmodified	_YLGAIREDRE_					0	0	0			REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.3147514553001	2	611.314751	1220.61495	0.33379	0.00020405	4.4938	0.0027471	4.8276	0.0029512	611.3175917686551	33.6	0.14471	33.6	33.576	33.721	0	1191	79	0.90387505	0.047770202	0.90387505	366.1238	0	19.349792						205	7	2	NaN	NaN	NaN	0.68669	1	17000	17000		8.962	0.67169	1	18022	+		31771	8153	18348	18848	25336	25336					0.01346710041048027
YLGAIREDRE	10	Unmodified						0	0	0			REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	611.314751	1220.61495	0.33379	0.00020405	4.4938	0.0027471	4.8276	0.0029512	611.3175917686551	33.6	0.14471	33.6	33.576	33.721	0	1191	79	0.90387505	0.047770202	0.90387505	366.1238		19.349792	-0.046716	0.00059456	-0.0047522	NaN	8.962	205	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18022	+		31772	8153	18348	18848							0.01346710041048027
YLGAIREDRE	10	Unmodified						0	0	0			REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	REV__ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	611.314751	1220.61495	0.54058	0.00033046	2.4412	0.0014923	2.9817	0.0018228	611.8184265512414	33.695	0.048267	33.694	33.694	33.742	-0.0018501	1173	64	0.91489893	0.03857732	0.9133795	370.58914		15.62616	0.046716	-0.001915	0.0047522	NaN	8.962	81	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5426.8	+		31773	8153	18348	18848							0.01346710041048027
YLGEKYFYFL	10	Unmodified	_YLGEKYFYFL_					0	0	0			REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	671.83953943255	2	671.839539	1341.66453	1.0739	0.0007215	-5.3807	-0.003615	-4.3068	-0.0028935	671.8347251798629	34.879	0.096382	34.879	34.879	34.975	0	1068	43	0.97906286	0.025625527	0.97906286	396.1791	0	10.369385						55	5	2	NaN	NaN	NaN	0.53991	1	19436	19436		17.799	0.94067	1	3559.6	+		31774	9803	18349	18849	25337	25337					0.007360249971270605
YLGFKEVKE	9	Unmodified	_YLGFKEVKE_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	371.5377301295333	3	371.53773	1111.59136	1.3359	0.00049635	-1.4362	-0.00053362	-0.10029	-3.7262E-05	371.53711321798676	20.983	0.14436	20.983	20.959	21.103	0	1428	43	0.7580582	0.025951624	0.7580582	461.08844	0	15.785095						175	7	4	NaN	NaN	NaN	0.31737	1	13350	13350		11.739	0	1	21643	+		31775	10687	18350	18850	25338	25338					0.040028962745282115
YLGGDIIL	8	Unmodified	_YLGGDIIL_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	863.4872960920001	1	863.487296	862.48002	1.0215	0.00088203	-5.5738	-0.0048129	-4.5524	-0.0039309	863.4827123107341	36.998	0.19244	37	36.952	37.145	0.0022507	354	73	1.4090419	0.04281497	1.4075224	286.69965	0	8.711609						258	9	2	NaN	NaN	NaN	0.50567	1	5428	5428		30.791	0	1	35693	+		31776	8754	18351	18851	25339	25339					0.04327881637232167
YLGGGAGG	8	Unmodified	_YLGGGAGG_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	326.15847127200004	2	326.158471	650.30239	1.4023	0.00045738	4.3894	0.0014317	5.7918	0.001889	326.1598470734665	43.441	0.096046	43.441	43.441	43.537	0	1536	37	0.69119483	0.0223338	0.69119483	282.70364	0	9.134674						71	5	2	NaN	NaN	NaN	0.84876	1	2053	2053		0.39566	0	1	5102.1	+		31777	9694	18352	18852	25340	25340					-0.03674948842080994
YLGILHGATFI	11	Unmodified	_YLGILHGATFI_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.83987378355	2	602.839874	1203.66519	-0.034998	-2.1098E-05	3.1199	0.0018808	3.0849	0.0018597	602.8415501448604	45.093	0.11982	45.105	45.057	45.177	0.011646	1173	40	0.91489893	0.023878634	0.9133795	370.6475	0	9.673798						90	6	2	NaN	NaN	NaN	0.17715	1	15934	15934		32.453	0	1	6868.5	+		31778	10101	18353	18853	25341	25341					0.07150864436835036
YLGLCTSVVF	10	Unmodified	_YLGLCTSVVF_					0	0	0		ENST00000392595.6_1_11:134118193-134118331:-|nuORF	ENST00000392595.6_1_11:134118193-134118331:-|nuORF	ENST00000392595.6_1_11:134118193-134118331:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.2860854763001	2	551.286085	1100.55762	1.4424	0.00079515	-7.2428	-0.0039928	-5.8004	-0.0031977	551.2785743940165	28.291	0.048271	28.291	28.267	28.315	0	1200	88	0.89836043	0.053365707	0.89836043	364.3336	0	21.64264						143	3	4	NaN	NaN	NaN	0.5081	1	12867	12867		19.118	1.338	1	19990			31779	6759	18354	18854	25342	25342					0.011361515111047993
YLGSIMKEFLQ	11	Unmodified	_YLGSIMKEFLQ_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.8495811901001	2	664.849581	1327.68461	1.581	0.0010511	-5.6267	-0.0037409	-4.0456	-0.0026897	664.8457582694705	26.722	0.1453	26.722	26.65	26.795	0	1080	64	0.9717421	0.038456857	0.9717421	393.25897	0	15.563293						213	7	3	NaN	NaN	NaN	0.50669	1	19226	19226		18.233	3.8085	1	27320	+		31780	10129	18355	18855	25343	25343					0.03387452665447199
YLGSIMKEFLQ	11	Unmodified						0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	664.849581	1327.68461	1.581	0.0010511	-5.6267	-0.0037409	-4.0456	-0.0026897	664.8457582694705	26.722	0.1453	26.722	26.65	26.795	0	1080	64	0.9717421	0.038456857	0.9717421	393.25897		15.563293	-0.0065623	9.3351E-05	0.00075972	NaN	18.233	213	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27320	+		31781	10129	18355	18855							0.03387452665447199
YLGSIMKEFLQ	11	Unmodified						0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	664.849581	1327.68461	1.5006	0.00099767	-5.8479	-0.003888	-4.3473	-0.0028903	664.8445333074013	26.746	0.14478	26.735	26.639	26.783	-0.010645	1080	70	0.9717421	0.042114913	0.97022265	393.25897		17.043701	0.0065623	-0.00020077	-0.00075972	NaN	18.233	255	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30038	+		31782	10129	18355	18855							0.03387452665447199
YLGSSPGG	8	Unmodified	_YLGSSPGG_					0	0	0		TRIM17|p.E324G|1|0.25|ENSG00000162931|chr1:228408664-228408664|T/C|missense_variant	TRIM17|p.E324G|1|0.25|ENSG00000162931|chr1:228408664-228408664|T/C|missense_variant	TRIM17|p.E324G|1|0.25|ENSG00000162931|chr1:228408664-228408664|T/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	737.3464455142001	1	737.346446	736.339169	1.3746	0.0010136	5.2678	0.0038842	6.6424	0.0048978	737.3503136100394	32.514	0.31369	32.514	32.418	32.732	0	576	133	1.2765218	0.07916641	1.2765218	260.43277	0	16.151321						498	14	4	NaN	NaN	NaN	0.69631	1	3846	3846		19.285	2.8681	1	94250			31783	14014	18356	18856	25344	25344					-0.039546970161836725
YLHCVLSFP	9	Unmodified	_YLHCVLSFP_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF;AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1078.5390140865	1	1078.53901	1077.53174	2.0865	0.0022504	-3.1921	-0.0034428	-1.1056	-0.0011924	1078.5351572883385	28.725	0.36198	28.716	28.62	28.982	-0.0083504	126	178	1.544062	0.10449052	1.5425426	313.1866	0	21.194122						1142	16	3	NaN	NaN	NaN	0.3389	1	11552	11552		16.417	1.9916	1	372710			31784	6119	18357	18857	25345	25345					-0.003926979405150632
YLHGGSPA	8	Unmodified	_YLHGGSPA_					0	0	0			REV__ENSG00000168916|ENST00000513986|ZNF608	REV__ENSG00000168916|ENST00000513986|ZNF608	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.19812774875	2	401.198128	800.381703	2.1797	0.00087449	-8.8727	-0.0035597	-6.693	-0.0026852	401.1961008414745	29.835	0.024126	29.828	29.828	29.852	-0.0070667	1437	28	0.7524962	0.016685963	0.75097674	306.58896	0	6.7983093						29	2	2	NaN	NaN	NaN	0.84692	1	4656	4656		1.4396	0.19772	1	2073.3	+		31785	10528	18358	18858	25346	25346					-0.026473018879528354
YLHLAFLMT	9	Unmodified	_YLHLAFLMT_					0	0	0		EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant;ENSG00000126860|ENST00000462804|EVI2A;nc|ENSG00000126860|P22794-2|EVI2A	EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant	EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7966203728502	2	554.79662	1107.57869	1.148	0.00063692	8.3942	0.0046571	9.5423	0.005294	554.8001309986344	29.762	0.07239	29.755	29.731	29.803	-0.0070667	1212	52	0.8910048	0.03125292	0.88948536	361.3221	0	12.673737						74	4	2	NaN	NaN	NaN	0.39983	1	12813	12813		13.737	1.1492	1	9693.8			31786	2519	18359	18859	25347	25347					0.02920161610654759
YLHLAFLMT	9	Unmodified						0	0	0		EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant;ENSG00000126860|ENST00000462804|EVI2A;nc|ENSG00000126860|P22794-2|EVI2A	EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant	EVI2A|p.I47Ffs*18|1|0.28|ENSG00000126860|chr17:31318875-31318875|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.79662	1107.57869	1.2768	0.00070835	11.348	0.0062957	12.625	0.0070041	554.8034218920575	29.715	0.072388	29.715	29.691	29.763	0	1209	37	0.892844	0.022066832	0.892844	362.06793		8.948608	-0.020166	0.0015314	0.0016793	NaN	13.737	53	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6070.5			31787	2519	18359	18859							0.02920161610654759
YLHRLESKS	9	Unmodified	_YLHRLESKS_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	378.2084954698	3	378.208495	1131.60366	2.368	0.00089558	-11.059	-0.0041827	-8.6913	-0.0032871	378.20473728071516	15.508	0.047966	15.496	15.472	15.52	-0.012202	1455	31	0.7413668	0.018552959	0.73984736	450.8385	0	11.28241						56	3	3	NaN	NaN	NaN	0.6532	1	13705	13705		3.2116	1.5131	1	3792.6	+		31788	9438	18360	18860	25348	25348					0.04311932737573443
YLHVARWLQFH	11	Unmodified	_YLHVARWLQFH_					0	0	0		ENST00000373318.6_1_2:241465198-241494298:-|nuORF	ENST00000373318.6_1_2:241465198-241494298:-|nuORF	ENST00000373318.6_1_2:241465198-241494298:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	735.3936704783	2	735.39367	1468.77279	0.78379	0.0005764	-9.1965	-0.006763	-8.4127	-0.0061866	735.3883446782359	31.693	0.072372	31.688	31.64	31.712	-0.0044174	1002	37	1.0192708	0.021905541	1.0177513	412.08517	0	8.856323						99	4	3	NaN	NaN	NaN	0.69801	1	19475	19475		7.5876	1.6678	1	9367			31789	6673	18361	18861	25349	25349					0.057152540909100935
YLHVARWLQFH	11	Unmodified						0	0	0		ENST00000373318.6_1_2:241465198-241494298:-|nuORF	ENST00000373318.6_1_2:241465198-241494298:-|nuORF	ENST00000373318.6_1_2:241465198-241494298:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	735.39367	1468.77279	0.77797	0.00057211	-7.3921	-0.0054361	-6.6141	-0.004864	735.3867038636973	31.67	0.072428	31.67	31.646	31.718	0	1002	40	1.0192708	0.023729801	1.0192708	412.08517		9.593842	-0.0093062	0.001299	0.00075972	NaN	7.5876	107	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9805.4			31790	6673	18361	18861							0.057152540909100935
YLIESLEWTQR	11	Unmodified	_YLIESLEWTQR_					0	0	0			REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	719.3722663342	2	719.372266	1436.72998	1.0181	0.00073237	1.6422	0.0011813	2.6602	0.0019137	719.3750189682581	28.652	0.19301	28.644	28.572	28.765	-0.0083485	1029	55	1.0028336	0.032886803	1.0013142	405.52408	0	13.298706						195	9	3	NaN	NaN	NaN	0.57257	1	19346	19346		15.822	4.0831	1	15386	+		31791	13291	18362	18862	25350	25350					0.029083944521744343
YLIESLEWTQR	11	Unmodified						0	0	0			REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	719.372266	1436.72998	1.2951	0.00093166	3.415	0.0024566	4.7101	0.0033883	719.374191599686	28.653	0.24132	28.653	28.484	28.725	0	1032	49	1.0010062	0.02923578	1.0010062	404.78513		11.822327	0.0045666	0.00099763	-0.00015395	NaN	15.822	184	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22223	+		31792	13291	18362	18862							0.029083944521744343
YLIESLEWTQR	11	Unmodified						0	0	0			REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	REV__PDZD8|p.S681L|1|0.13|ENSG00000165650|chr10:117284691-117284691|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	719.372266	1436.72998	1.0181	0.00073237	1.6422	0.0011813	2.6602	0.0019137	719.3750189682581	28.652	0.19301	28.644	28.572	28.765	-0.0083485	1029	55	1.0028336	0.032886803	1.0013142	405.52408		13.298706	-0.0045666	-0.001553	0.00015395	NaN	15.822	195	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15386	+		31793	13291	18362	18862							0.029083944521744343
YLIEYLVAQCV	11	Unmodified	_YLIEYLVAQCV_					0	0	0			REV__nc|ENSG00000101901|Q9NP73-4|ALG13	REV__nc|ENSG00000101901|Q9NP73-4|ALG13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	657.34413167145	2	657.344132	1312.67371	1.5847	0.0010417	2.5442	0.0016724	4.129	0.0027141	657.3459714965967	25.419	0.14476	25.419	25.298	25.443	0	1107	43	0.9552588	0.025653124	0.9552588	386.63376	0	10.382904						90	7	2	NaN	NaN	NaN	0.73455	1	18999	18999		5.1889	0.45981	1	8222.9	+		31794	8869	18363	18863	25351	25351					0.02988050291151012
YLIHHQRFH	9	Unmodified	_YLIHHQRFH_					0	0	0		ZNF530|p.E436Sfs*5|1|0.04|ENSG00000183647|chr19:57606829-57606830|-/CTCCAGTGTGAAC|frameshift_variant;ENSG00000183647|ENST00000597700|ZNF530;ENST00000598297.1_1_19:58116980-58118690:+|nuORF;nc|ENSG00000183647|Q6P9A1|ZNF530	ZNF530|p.E436Sfs*5|1|0.04|ENSG00000183647|chr19:57606829-57606830|-/CTCCAGTGTGAAC|frameshift_variant	ZNF530|p.E436Sfs*5|1|0.04|ENSG00000183647|chr19:57606829-57606830|-/CTCCAGTGTGAAC|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.8307060807501	2	625.830706	1249.64686	1.781	0.0011146	-11.502	-0.0071984	-9.7212	-0.0060838	625.8237119111765	26.022	0.16895	26.011	25.938	26.107	-0.011135	1143	76	0.9332562	0.045866013	0.93173677	377.9268	0	18.57367						285	8	3	NaN	NaN	NaN	0.47587	1	17018	17018		10.605	0.24481	1	47998			31795	5315	18364	18864	25352	25352					0.03202167305516923
YLIKDIRFL	9	Unmodified	_YLIKDIRFL_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.24113651333334	3	394.241137	1179.70158	1.4692	0.00057924	-2.7066	-0.0010671	-1.2374	-0.00048783	394.2402815015973	21.657	0.096388	21.657	21.633	21.73	0	1473	31	0.7302302	0.018565059	0.7302302	443.84845	0	11.284241						56	5	2	NaN	NaN	NaN	0.44834	1	15827	15827		11.739	0.56853	1	4039.1			31796	1183	18365	18865	25353	25353					0.11891741333556638
YLILGAVLG	9	Unmodified	_YLILGAVLG_					0	0	0		tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	tr|U7T8A2|U7T8A2_FUSNU1,4-dihydroxy-2-naphthoateoctaprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00172PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	918.5658807640002	1	918.565881	917.558604	1.1913	0.0010943	0.45178	0.00041499	1.6431	0.0015093	918.5660621961457	34.564	0.12057	34.563	34.539	34.66	-0.00064468	225	67	1.4855686	0.039072156	1.4840492	301.98575	0	7.942566						174	6	3	NaN	NaN	NaN	0.16059	1	6246	6246		27.861	0	1	22764			31797	14008	18366	18866	25354	25354					0.09652733942334635
YLIPDGGG	8	Unmodified	_YLIPDGGG_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	791.3933957068002	1	791.393396	790.386119	2.2547	0.0017844	4.5861	0.0036294	6.8408	0.0054138	791.3970371595408	25.901	0.14477	25.901	25.877	26.022	0	471	49	1.3393306	0.028661966	1.3393306	272.90512	0	5.8402405						117	7	2	NaN	NaN	NaN	0.75682	1	4628	4628		15.013	0	1	10766	+		31798	11191	18367	18867	25355	25355					-0.01745837465034583
YLIPDGGG	8	Unmodified	_YLIPDGGG_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	791.3933957068002	1	791.393396	790.386119	2.4234	0.0019179	5.6959	0.0045077	8.1193	0.0064255	791.3981835309462	25.925	0.12066	25.914	25.89	26.01	-0.0116	471	49	1.3393306	0.028661966	1.3378111	272.90512	0	5.8402405						113	6	2	NaN	NaN	NaN	0.81807	1	4544	4544		6.794	0	1	10148	+		31799	11191	18367	18867	25356	25356					-0.01745837465034583
YLIPDGGG	8	Unmodified						0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	791.393396	790.386119	2.2547	0.0017844	4.5861	0.0036294	6.8408	0.0054138	791.3970371595408	25.901	0.14477	25.901	25.877	26.022	0	471	49	1.3393306	0.028661966	1.3393306	272.90512		5.8402405	-0.0061615	-0.00046213	0.00075972	NaN	15.013	117	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10766	+		31800	11191	18367	18867							-0.01745837465034583
YLIPDGGG	8	Unmodified						0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	791.393396	790.386119	2.4234	0.0019179	5.6959	0.0045077	8.1193	0.0064255	791.3981835309462	25.925	0.12066	25.914	25.89	26.01	-0.0116	471	49	1.3393306	0.028661966	1.3378111	272.90512		5.8402405	0.0061615	0.00041614	-0.00075972	NaN	15.013	113	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10148	+		31801	11191	18367	18867							-0.01745837465034583
YLIQEHWSLG	10	Unmodified	_YLIQEHWSLG_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.316762828	2	623.316763	1244.61897	1.6194	0.0010094	-0.34017	-0.00021203	1.2792	0.00079734	623.3169209820413	28.05	0.1448	28.05	28.026	28.17	0	1080	40	0.9717421	0.023798943	0.9717421	393.52917	0	9.637909						142	7	3	NaN	NaN	NaN	0.67523	1	17630	17630		9.746	0	1	16673	+		31802	8150	18368	18868	25357	25357					0.006447995347571123
YLIQEHWSLG	10	Unmodified						0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	623.316763	1244.61897	1.6194	0.0010094	-0.34017	-0.00021203	1.2792	0.00079734	623.3169209820413	28.05	0.1448	28.05	28.026	28.17	0	1080	40	0.9717421	0.023798943	0.9717421	393.52917		9.637909	-0.019278	-0.001078	0.00075972	NaN	9.746	142	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16673	+		31803	8150	18368	18868							0.006447995347571123
YLIQEHWSLG	10	Unmodified						0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	623.316763	1244.61897	0.63099	0.00039331	1.412	0.00088012	2.043	0.0012734	623.3184119593349	28.097	0.12066	28.088	28.04	28.161	-0.0089798	1080	49	0.9717421	0.029292583	0.97022265	393.52917		11.862701	0.019278	0.0011063	-0.00075972	NaN	9.746	160	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18436	+		31804	8150	18368	18868							0.006447995347571123
YLIQSHHSRRS	11	Unmodified	_YLIQSHHSRRS_					0	0	0		nc|ENSG00000064692|Q9Y6H5-5|SNCAIP;nc|ENSG00000064692|Q9Y6H5-2|SNCAIP	nc|ENSG00000064692|Q9Y6H5-5|SNCAIP	nc|ENSG00000064692|Q9Y6H5-5|SNCAIP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	692.36564132035	2	692.365641	1382.71673	1.899	0.0013148	-7.8464	-0.0054326	-5.9474	-0.0041178	692.8619864560859	25.419	0.24123	25.419	25.346	25.588	0	1053	58	0.9882094	0.034753084	0.9882094	399.75922	0	14.058624						202	11	2	NaN	NaN	NaN	0.63005	1	19917	19917		12.049	0.30984	1	25291			31805	7906	18369	18869	25358	25358					0.04068001183463821
YLKDFYEIIY	10	Unmodified	_YLKDFYEIIY_					0	0	0			REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	683.8501041188501	2	683.850104	1365.68566	1.2437	0.00085047	6.2737	0.0042903	7.5174	0.0051407	683.8541227628876	27.759	0.21722	27.75	27.726	27.943	-0.009552	1068	88	0.97906286	0.053055704	0.9775434	396.108	0	21.46518						362	10	4	NaN	NaN	NaN	0.47601	1	18830	18830		20.449	1.1122	1	37100	+		31806	11845	18370	18870	25359	25359					0.017439903060221695
YLKDFYEIIY	10	Unmodified						0	0	0			REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	683.850104	1365.68566	1.8007	0.0012314	6.7157	0.0045925	8.5164	0.0058239	683.8547752935826	27.736	0.16892	27.736	27.688	27.857	0	1071	85	0.977233	0.05122894	0.977233	395.36768		20.726135	-0.0068767	0.00034212	-0.00015523	NaN	20.449	349	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36779	+		31807	11845	18370	18870							0.017439903060221695
YLKDFYEIIY	10	Unmodified						0	0	0			REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	REV__ENST00000361272.8_2_8:17087834-17087987:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	683.850104	1365.68566	1.2437	0.00085047	6.2737	0.0042903	7.5174	0.0051407	683.8541227628876	27.759	0.21722	27.75	27.726	27.943	-0.009552	1068	88	0.97906286	0.053055704	0.9775434	396.108		21.46518	0.0068767	-0.0002624	0.00015523	NaN	20.449	362	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37100	+		31808	11845	18370	18870							0.017439903060221695
YLKDIYDIE	9	Unmodified	_YLKDIYDIE_					0	0	0		tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	tr|U7STA6|U7STA6_FUSNUDNAmismatchrepairproteinMutSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutSPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.2977044076	2	586.297704	1170.58086	1.0502	0.00061575	8.6923	0.0050963	9.7425	0.005712	586.3003651730662	28.387	0.16891	28.378	28.281	28.45	-0.0089779	1173	58	0.91489893	0.034899533	0.9133795	370.76617	0	14.143188						235	8	5	NaN	NaN	NaN	0.59509	1	14966	14966		5.6942	0.78442	1	22956			31809	13849	18371	18871	25360	25360					0.002388688294331587
YLKFIEEFK	9	Unmodified	_YLKFIEEFK_					0	0	0		tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	tr|U7SNC7|U7SNC7_FUSNUD-aminoacyl-tRNAdeacylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dtdPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	406.2252635484666	3	406.225264	1215.65396	1.5549	0.00063163	6.2706	0.0025473	7.8255	0.0031789	406.2281961250311	21.874	0.048126	21.874	21.826	21.874	0	1407	31	0.77102906	0.018522859	0.77102906	468.48682	0	11.2547						41	3	2	NaN	NaN	NaN	0.51625	1	16884	16884		8.9416	1.8112	1	3679.5			31810	13783	18372	18872	25361	25361					0.05476042342706933
YLKRNQFEVFP	11	Unmodified	_YLKRNQFEVFP_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.8853439197001	2	720.885344	1439.75613	1.0998	0.0007928	-10.473	-0.0075501	-9.3736	-0.0067573	720.8779337148965	26.866	0.1448	26.856	26.808	26.952	-0.010645	1014	52	1.0119673	0.031041265	1.0104479	409.20938	0	12.552185						144	7	3	NaN	NaN	NaN	0.74794	1	19358	19358		4.3102	0.38204	1	10855			31811	5544	18373	18873	25362	25362					0.05384708414317174
YLKRVEIM	8	Unmodified	_YLKRVEIM_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	526.3020698915001	2	526.30207	1050.58959	0.91739	0.00048283	5.268	0.0027726	6.1854	0.0032554	526.3048376571651	27.156	0.16892	27.146	27.098	27.267	-0.010126	1230	43	0.8799654	0.02576691	0.878446	357.0832	0	10.456024						129	8	2	NaN	NaN	NaN	0.57691	1	10442	10442		26.732	0	1	18136			31812	2037	18374	18874	25363	25363					0.06631563984910827
YLKTYYIT	8	Unmodified	_YLKTYYIT_					0	0	0		tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.78677558055	2	532.786776	1063.559	2.3842	0.0012703	-6.5153	-0.0034713	-4.1311	-0.002201	532.7832865502648	18.34	0.047962	18.34	18.292	18.34	0	1254	49	0.8652351	0.029479682	0.8652351	351.0504	0	11.960754						65	3	2	NaN	NaN	NaN	0.74229	1	11285	11285		16.417	0.95397	1	10720			31813	13842	18375	18875	25364	25364					0.02976108871530414
YLKVLQKCFH	10	Unmodified	_YLKVLQKCFH_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.8550009190001	2	639.855001	1277.69545	1.4347	0.000918	8.0029	0.0051207	9.4376	0.0060387	639.8606209764894	39.694	0.45746	39.694	39.646	40.104	0	1179	97	0.9112251	0.058838546	0.9112251	368.91656	0	23.821259						1261	20	3	NaN	NaN	NaN	0.77421	1	18380	18380		1.9246	0.41924	1	374890	+		31814	10536	18376	18876	25365	25365					0.06770899830394228
YLLAEQGG	8	Unmodified	_YLLAEQGG_					0	0	0		ENSG00000269526|ENST00000602168|ERVV-1;ENSG00000268964|ENST00000601417|ERVV-2	ENSG00000269526|ENST00000602168|ERVV-1	ENSG00000269526|ENST00000602168|ERVV-1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	850.4305094946002	1	850.430509	849.423233	0.68203	0.00058002	4.5428	0.0038633	5.2248	0.0044433	850.4346008119595	32.513	0.096535	32.51	32.462	32.558	-0.0031052	411	94	1.3751161	0.055382013	1.3735967	279.86417	0	11.271393						202	5	2	NaN	NaN	NaN	0.55996	1	5242	5242		27.789	2.8278	1	17419			31815	6169	18377	18877	25366	25366					-0.0075016591927123955
YLLAEQGG	8	Unmodified						0	0	0		ENSG00000269526|ENST00000602168|ERVV-1;ENSG00000268964|ENST00000601417|ERVV-2	ENSG00000269526|ENST00000602168|ERVV-1	ENSG00000269526|ENST00000602168|ERVV-1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	850.430509	849.423233	1.4145	0.001203	3.2585	0.0027712	4.6731	0.0039741	850.4328277735877	32.514	0.072399	32.514	32.466	32.539	0	417	88	1.3715409	0.051809072	1.3715409	279.13657		10.544189	0.0021038	-0.0005548	-0.0010278	NaN	27.789	141	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12228			31816	6169	18377	18877							-0.0075016591927123955
YLLENGLNLFL	11	Unmodified	_YLLENGLNLFL_					0	0	0		nc|ENSG00000176986|P53992-2|SEC24C;VCL-SEC24C|1|fusion;ENSG00000176986|ENST00000345254|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	nc|ENSG00000176986|P53992-2|SEC24C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.8635458451	2	654.863546	1307.71254	1.1142	0.00072965	-1.8998	-0.0012441	-0.7856	-0.00051446	654.86220051886	36.928	0.1924	36.928	36.856	37.048	0	1083	55	0.9699114	0.032954156	0.9699114	392.57983	0	13.33847						306	9	3	NaN	NaN	NaN	0.026113	1	18899	18899		58.769	2.8113	1	72708			31817	5052	18378	18878	25367	25367					0.07099098917183255
YLLGGLLIG	9	Unmodified	_YLLGGLLIG_					0	0	0		ENST00000528658.1_1_8:70673979-70744908:-|nuORF;ENST00000532388.5_1_8:70617264-70744908:-|nuORF;nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	ENST00000528658.1_1_8:70673979-70744908:-|nuORF	ENST00000528658.1_1_8:70673979-70744908:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	918.5658807640002	1	918.565881	917.558604	1.7164	0.0015766	-0.042935	-3.9438E-05	1.6735	0.0015372	918.5655699843772	34.565	0.096489	34.565	34.541	34.638	0	228	61	1.4837929	0.035520196	1.4837929	301.62476	0	7.22052						156	5	3	NaN	NaN	NaN	0.26823	1	6377	6377		20.952	0	1	20318			31818	3094	18379	18879	25368	25368					0.09652733942334635
YLLHCMPTDSQ	11	Unmodified	_YLLHCMPTDSQ_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	654.2915731722001	2	654.291573	1306.56859	1.2584	0.00082338	-10.95	-0.0071646	-9.6917	-0.0063412	654.2850015313276	28.701	0.1689	28.701	28.629	28.798	0	1104	61	0.9570911	0.036639452	0.9570911	387.3943	0	14.830261						223	8	4	NaN	NaN	NaN	0.65577	1	18875	18875		10.36	1.237	1	32003			31819	3881	18380	18880	25369	25369					-0.07242814176902357
YLLIRKKT	8	Unmodified	_YLLIRKKT_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.67207717	1	1034.67208	1033.6648	1.7245	0.0017843	-2.175	-0.0022505	-0.45059	-0.00046621	1034.6699852948784	53.803	0.12053	53.803	53.755	53.876	0	111	67	1.5529068	0.038898587	1.5529068	315.14963	0	7.8941345						193	6	3	NaN	NaN	NaN	0.84727	1	9946	9946		1.2418	0	1	17505	+		31820	10272	18381	18881	25370	25370					0.1493148950764862
YLLIRKKT	8	Unmodified	_YLLIRKKT_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.67207717	1	1034.67208	1033.6648	-0.333	-0.00034455	-1.7654	-0.0018266	-2.0984	-0.0021712	1034.6701794783582	53.826	0.096432	53.825	53.777	53.873	-0.00059128	111	55	1.5529068	0.031829476	1.5513873	315.14963	0	6.4595337						110	5	2	NaN	NaN	NaN	0.84727	1	9743	9743		1.2418	0	1	9302.6	+		31821	10272	18381	18881	25371	25371					0.1493148950764862
YLLIRKKT	8	Unmodified						0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1034.67208	1033.6648	1.7245	0.0017843	-2.175	-0.0022505	-0.45059	-0.00046621	1034.6699852948784	53.803	0.12053	53.803	53.755	53.876	0	111	67	1.5529068	0.038898587	1.5529068	315.14963		7.8941345	-0.0109	-0.00012201	0.00075972	NaN	1.2418	193	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17505	+		31822	10272	18381	18881							0.1493148950764862
YLLIRKKT	8	Unmodified						0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1034.67208	1033.6648	-0.333	-0.00034455	-1.7654	-0.0018266	-2.0984	-0.0021712	1034.6701794783582	53.826	0.096432	53.825	53.777	53.873	-0.00059128	111	55	1.5529068	0.031829476	1.5513873	315.14963		6.4595337	0.0109	0.00030184	-0.00075972	NaN	1.2418	110	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9302.6	+		31823	10272	18381	18881							0.1493148950764862
YLLLDMIVQ	9	Unmodified	_YLLLDMIVQ_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000477988.1_1_2:183790432-183791654:-|nuORF	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.3095605726	2	554.309561	1106.60457	1.0326	0.00057236	-3.676	-0.0020376	-2.6434	-0.0014653	554.3078559754772	32.972	0.16879	32.969	32.897	33.066	-0.0024757	1215	46	0.8891654	0.02759397	0.88764596	360.58014	0	11.190094						131	8	3	NaN	NaN	NaN	0.33629	1	12770	12770		16.584	1.4088	1	13386			31824	645	18382	18882	25372	25372					0.05553011062261248
YLLLLAFLQR	10	Unmodified	_YLLLLAFLQR_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1249.7667058366999	1	1249.76671	1248.75943	1.0915	0.0013641	5.5353	0.0069179	6.6268	0.008282	1249.7737823334821	41.568	0.048126	41.577	41.553	41.601	0.0082588	633	142	1.2423272	0.08462286	1.2408078	251.54745	0	17.134521						161	3	2	NaN	NaN	NaN	0.78133	1	17005	17005		0.19249	0	1	16383			31825	4871	18383	18883	25373	25373					0.14500003258967809
YLLLLAFLQR	10	Unmodified						0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1249.76671	1248.75943	1.9782	0.0024723	6.0986	0.0076218	8.0768	0.010094	1249.7747721332323	41.666	0.16837	41.666	41.666	41.835	0	633	112	1.2423272	0.06665361	1.2423272	251.54745		13.496063	0.044725	0.00027561	0.00075972	NaN	0.19249	277	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21744			31826	4871	18383	18883							0.14500003258967809
YLLLLHCP	8	Unmodified	_YLLLLHCP_					0	0	0		ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	971.538285805	1	971.538286	970.531009	1.021	0.0009919	1.9028	0.0018487	2.9238	0.0028406	971.5402130523195	31.211	0.096527	31.211	31.187	31.284	0	240	100	1.4766881	0.05863011	1.4766881	299.93823	0	11.908661						152	5	2	NaN	NaN	NaN	0.83849	1	7628	7628		4.0537	0.48046	1	9650.3			31827	7529	18384	18884	25374	25374					0.04456507410429822
YLLPDRKKK	9	Unmodified	_YLLPDRKKK_					0	0	0		ENSG00000110975|ENST00000228567|SYT10;ENSG00000213023|ENST00000600079|SYT3	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	387.57651918346664	3	387.576519	1159.70773	1.5355	0.00059514	7.9457	0.0030796	9.4812	0.0036747	387.914999667705	28.798	0.096563	28.798	28.774	28.87	0	1494	25	0.7172283	0.014864981	0.7172283	436.0323	0	9.037018						48	5	2	NaN	NaN	NaN	0.68959	1	15144	15144		0.094767	0.015302	1	2564.2			31828	1789	18385	18885	25375	25375					0.13426259565062537
YLLQLQTKS	9	Unmodified	_YLLQLQTKS_					0	0	0		DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	547.31623151175	2	547.316232	1092.61791	0.70804	0.00038752	2.107	0.0011532	2.8151	0.0015407	547.3173105620881	35.53	0.072392	35.53	35.506	35.578	0	1224	94	0.883646	0.05708307	0.883646	358.3983	0	23.152344						165	4	3	NaN	NaN	NaN	0.3389	1	12514	12514		16.417	0	1	21667			31829	265	18386	18886	25376	25376					0.07530585165818593
YLLRSGAG	8	Unmodified	_YLLRSGAG_					0	0	0		CREB3L3|p.P205S|1|0.18|ENSG00000060566|chr19:4164539-4164539|C/T|missense_variant	CREB3L3|p.P205S|1|0.18|ENSG00000060566|chr19:4164539-4164539|C/T|missense_variant	CREB3L3|p.P205S|1|0.18|ENSG00000060566|chr19:4164539-4164539|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	836.4624783250001	1	836.462478	835.455202	1.8995	0.0015888	-0.48654	-0.00040697	1.4129	0.0011819	836.4620941320695	56.277	0.023964	56.277	56.277	56.301	0	474	40	1.3375392	0.0232867	1.3375392	272.289	0	4.74057						44	2	2	NaN	NaN	NaN	0.84876	1	5207	5207		0.39566	0	1	4385.4			31830	229	18387	18887	25377	25377					0.030892465545207415
YLLSFWFFYK	10	Unmodified	_YLLSFWFFYK_					0	0	0		ENST00000489097.5_1_1:6526697-6527309:-|nuORF	ENST00000489097.5_1_1:6526697-6527309:-|nuORF	ENST00000489097.5_1_1:6526697-6527309:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	707.3657243933001	2	707.365724	1412.7169	1.5644	0.0011066	0.13112	9.2749E-05	1.6955	0.0011993	707.3659156720823	26.408	0.07238	26.408	26.36	26.432	0	1062	37	0.9827221	0.021955252	0.9827221	397.4558	0	8.879639						61	4	2	NaN	NaN	NaN	0.77421	1	20166	20166		1.9246	0.22244	1	4491.6			31831	7255	18388	18888	25378	25378					0.027046081307389613
YLLSGRGG	8	Unmodified	_YLLSGRGG_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	822.4468282608002	1	822.446828	821.439552	1.2073	0.00099298	-8.5029	-0.0069931	-7.2955	-0.0060002	822.4394344970666	33.335	0.096554	33.335	33.335	33.431	0	447	58	1.3536539	0.03399098	1.3536539	275.64566	0	6.9216003						108	5	2	NaN	NaN	NaN	0.72043	1	5035	5035		17.78	0	1	7101.4			31832	7320	18389	18889	25379	25379					0.02168960037488432
YLLSGRGG	8	Unmodified						0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	822.446828	821.439552	1.1968	0.00098434	-9.058	-0.0074497	-7.8612	-0.0064654	822.4389357373647	33.358	0.096508	33.355	33.307	33.403	-0.0024796	444	49	1.3554435	0.028628469	1.353924	276.01007		5.829651	0.010162	-0.00028841	0.00013506	NaN	17.78	95	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5141.8			31833	7320	18389	18889							0.02168960037488432
YLLSPANFK	9	Unmodified	_YLLSPANFK_					0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.5775080827998	1	1052.57751	1051.57023	1.3253	0.0013949	-0.029188	-3.0723E-05	1.2961	0.0013642	1052.5770492307713	31.356	0.072407	31.356	31.332	31.404	0	96	73	1.5617468	0.04243481	1.5617468	316.87256	0	8.609863						104	4	2	NaN	NaN	NaN	0.33629	1	10706	10706		16.584	3.5813	1	7196.5	+		31834	10894	18390	18890	25380	25380					0.0465093096563578
YLLSPANFK	9	Unmodified						0	0	0			REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	REV__EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1052.57751	1051.57023	1.3253	0.0013949	-0.029188	-3.0723E-05	1.2961	0.0013642	1052.5770492307713	31.356	0.072407	31.356	31.332	31.404	0	96	73	1.5617468	0.04243481	1.5617468	316.87256		8.609863	0	0	0	NaN	16.584	104	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7196.5	+		31835	10894	18390	18890							0.0465093096563578
YLLYFLSFL	9	Unmodified	_YLLYFLSFL_					0	0	0		ENST00000463718.5_1_12:21428225-21457481:-|nuORF;nc|ENSG00000084453|P46721-2|SLCO1A2;ENSG00000084453|ENST00000683939|SLCO1A2	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	393.5547211088667	3	393.554721	1177.64233	1.6438	0.00064694	-4.2883	-0.0016877	-2.6445	-0.0010407	393.55318624735804	19.012	0.071949	19.012	18.964	19.036	0	1467	34	0.7339432	0.020418286	0.7339432	446.1143	0	12.410858						47	4	2	NaN	NaN	NaN	0.53206	1	15757	15757		7.5876	0	1	4274.9			31836	960	18391	18891	25381	25381					0.06061845319391068
YLMQRKVSI	9	Unmodified	_YLMQRKVSI_					0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	379.8864763582334	3	379.886476	1136.6376	1.8782	0.00071352	-1.1304	-0.00042941	0.74786	0.0002841	379.8858685211231	23.272	0.072332	23.272	23.224	23.296	0	1416	37	0.76547134	0.022234678	0.76547134	465.47205	0	13.520569						84	4	3	NaN	NaN	NaN	0.63698	1	14353	14353		2.1026	0.40409	1	7215	+		31837	8398	18392	18892	25382	25382					0.07474637904988413
YLMQRKVSI	9	Unmodified						0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	379.886476	1136.6376	1.8782	0.00071352	-1.1304	-0.00042941	0.74786	0.0002841	379.8858685211231	23.272	0.072332	23.272	23.224	23.296	0	1416	37	0.76547134	0.022234678	0.76547134	465.47205		13.520569	-0.12593	0.00090344	0.00075972	NaN	2.1026	84	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7215	+		31838	8398	18392	18892							0.07474637904988413
YLMQRKVSI	9	Unmodified						0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	379.886476	1136.6376	2.2248	0.00084519	-3.5268	-0.0013398	-1.302	-0.0004946	380.21933722632025	23.537	0.14476	23.524	23.428	23.572	-0.01305	1416	25	0.76547134	0.014823079	0.7639519	465.47205		9.013702	0.12593	-0.0018277	-0.00075972	NaN	2.1026	89	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5959.7	+		31839	8398	18392	18892							0.07474637904988413
YLMSKTEM	8	Unmodified	_YLMSKTEM_					0	0	0			REV__ENSG00000170145|ENST00000304987|SIK2	REV__ENSG00000170145|ENST00000304987|SIK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.73537117425	2	501.735371	1001.45619	1.4435	0.00072426	-8.9023	-0.0044666	-7.4588	-0.0037424	501.73070290361477	24.26	0.09655	24.248	24.224	24.32	-0.012749	1314	115	0.8283535	0.07015091	0.8268341	336.3528	0	28.484772						301	5	4	NaN	NaN	NaN	0.3434	1	8468	8468		39.459	2.1564	1	131570	+		31840	10572	18393	18893	25383	25383					-0.044480431830947964
YLNDLEDSYRQ	11	Unmodified	_YLNDLEDSYRQ_					0	0	0		ATP1A4|p.G909R|1|0.31|ENSG00000132681|chr1:160177653-160177653|G/A|missense_variant	ATP1A4|p.G909R|1|0.31|ENSG00000132681|chr1:160177653-160177653|G/A|missense_variant	ATP1A4|p.G909R|1|0.31|ENSG00000132681|chr1:160177653-160177653|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.3255131068499	2	708.325513	1414.63647	1.4521	0.0010285	-4.4035	-0.0031191	-2.9514	-0.0020906	708.3230588517971	23.465	0.1688	23.465	23.417	23.586	0	1050	40	0.9900381	0.023775876	0.9900381	400.4095	0	9.615875						81	8	2	NaN	NaN	NaN	0.75376	1	20180	20180		3.9281	0.35833	1	7419.6			31841	52	18394	18894	25384	25384					-0.054259497209159235
YLNKDFRNK	9	Unmodified	_YLNKDFRNK_					0	0	0		tr|U7SZL9|U7SZL9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00793PE=4SV=1	tr|U7SZL9|U7SZL9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00793PE=4SV=1	tr|U7SZL9|U7SZL9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00793PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.3223795221501	2	599.32238	1196.63021	1.5896	0.00095266	-9.2112	-0.0055205	-7.6216	-0.0045678	599.3160677771916	17.405	0.11995	17.405	17.381	17.501	0	1137	31	0.9369253	0.018345416	0.9369253	379.59625	0	7.432678						94	6	3	NaN	NaN	NaN	0.59509	1	16361	16361		5.6942	0.50528	1	7024.6			31842	13931	18395	18895	25385	25385					0.03975621628887893
YLNLAQFLKMT	11	Oxidation (M)	_YLNLAQFLKM(Oxidation (M))T_		YLNLAQFLKM(1)T		YLNLAQFLKM(51)T	0	0	1		RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	679.3628557408499	2	679.362856	1356.71116	1.1342	0.00077056	-1.9289	-0.0013104	-0.79469	-0.00053988	679.3620713676132	29.714	0.24126	29.707	29.659	29.9	-0.0070648	1074	85	0.9754029	0.05122894	0.97388345	394.65344	0	20.727478						515	11	5	NaN	NaN	NaN	0.046084	1	18741	18741		50.831	16.377	1	96022			31843	8112	18396	18896	25386	25386		646			0.0470714155674159
YLNLAQFLKMT	11	Oxidation (M)						0	0	1		RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	679.362856	1356.71116	1.7095	0.0011613	-2.7221	-0.0018493	-1.0127	-0.00068797	679.360973640028	29.691	0.26546	29.691	29.594	29.86	0	1077	94	0.9735726	0.056726873	0.9735726	393.9129		22.951996	-0.0080963	-0.00049591	-0.00015543	NaN	50.831	477	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105570			31844	8112	18396	18896				646			0.0470714155674159
YLNQSTAYHF	10	Unmodified	_YLNQSTAYHF_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.29074504275	2	622.290745	1242.56694	1.3658	0.00084995	4.2871	0.0026678	5.653	0.0035178	622.7953687793545	28.774	0.2413	28.774	28.653	28.894	0	1140	82	0.93509084	0.04951924	0.93509084	378.69327	0	20.054321						288	11	2	NaN	NaN	NaN	0.69717	1	17594	17594		8.2448	0.65458	1	33866			31845	2752	18397	18897	25387	25387					-0.04464363879014854
YLNQSTAYHF	10	Unmodified						0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.290745	1242.56694	0.66611	0.00041451	-1.1857	-0.00073783	-0.51956	-0.00032332	622.2919840219552	28.845	0.048262	28.837	28.837	28.885	-0.0083504	1149	76	0.92958635	0.045880854	0.9280669	376.46405		18.580841	0.031645	-0.0046784	-0.003512	NaN	8.2448	105	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15361			31846	2752	18397	18897							-0.04464363879014854
YLNRIGCFFL	10	Unmodified	_YLNRIGCFFL_					0	0	0		nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ENST00000508548.1_1_6:57016996-57018898:+|nuORF	nc|ENSG00000112200|Q9Y4E5-2|ZNF451	nc|ENSG00000112200|Q9Y4E5-2|ZNF451	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	623.3260763040502	2	623.326076	1244.6376	1.3015	0.00081124	-3.4384	-0.0021432	-2.1369	-0.001332	623.3246547769168	29.232	0.096554	29.232	29.16	29.256	0	1119	28	0.9479278	0.016497552	0.9479278	383.88498	0	6.6810303						82	5	3	NaN	NaN	NaN	0.73444	1	17632	17632		5.6942	0.78442	1	5599.1			31847	1860	18398	18898	25388	25388					0.0250663790498038
YLNYTSHPAD	10	Unmodified	_YLNYTSHPAD_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.76710277095	2	590.767103	1179.51965	1.3812	0.00081599	-0.33539	-0.00019814	1.0458	0.00061785	590.7676463260188	19.274	0.1682	19.26	19.212	19.38	-0.014143	1182	82	0.9093879	0.04963696	0.90786844	368.5003	0	20.1138						237	8	2	NaN	NaN	NaN	0.507	1	15223	15223		19.164	4.7386	1	92860	+		31848	8624	18399	18899	25389	25389					-0.06292643150004551
YLNYTSHPAD	10	Unmodified						0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	590.767103	1179.51965	1.7732	0.0010475	0.62408	0.00036869	2.3972	0.0014162	590.7675685992704	19.228	0.23995	19.228	19.18	19.42	0	1182	79	0.9093879	0.04779601	0.9093879	368.5003		19.367798	-0.015957	0.0003772	0.00075972	NaN	19.164	369	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126710	+		31849	8624	18399	18899							-0.06292643150004551
YLNYTSHPAD	10	Unmodified						0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.767103	1179.51965	1.3812	0.00081599	-0.33539	-0.00019814	1.0458	0.00061785	590.7676463260188	19.274	0.1682	19.26	19.212	19.38	-0.014143	1182	82	0.9093879	0.04963696	0.90786844	368.5003		20.1138	0.015957	-0.00075645	-0.00075972	NaN	19.164	237	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92860	+		31850	8624	18399	18899							-0.06292643150004551
YLPALISRE	9	Unmodified	_YLPALISRE_					0	0	0			REV__ENSG00000116199|ENST00000263733|FAM20B	REV__ENSG00000116199|ENST00000263733|FAM20B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.3031241365001	2	531.303124	1060.5917	0.34887	0.00018536	-2.8938	-0.0015375	-2.545	-0.0013521	531.3018150076947	33.261	0.12064	33.259	33.235	33.355	-0.0024757	1257	40	0.86339295	0.023948371	0.8618735	350.3155	0	9.716888						123	6	3	NaN	NaN	NaN	0.41766	1	10892	10892		13.003	0	1	15733	+		31851	9216	18400	18900	25390	25390					0.06382315994369492
YLPEFLYF	8	Unmodified	_YLPEFLYF_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.2760437187501	2	546.276044	1090.53753	1.5465	0.00084483	-5.4735	-0.0029901	-3.927	-0.0021452	546.2727848567498	20.021	0.09614	20.021	19.972	20.069	0	1266	79	0.85786515	0.04790461	0.85786515	347.9501	0	19.430115						192	5	3	NaN	NaN	NaN	0.69631	1	12424	12424		19.285	3.822	1	24161	+		31852	10723	18401	18901	25391	25391					-0.0041127615718323796
YLPEFLYF	8	Unmodified						0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	546.276044	1090.53753	1.5465	0.00084483	-5.4735	-0.0029901	-3.927	-0.0021452	546.2727848567498	20.021	0.09614	20.021	19.972	20.069	0	1266	79	0.85786515	0.04790461	0.85786515	347.9501		19.430115	0	0	0	NaN	19.285	192	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24161	+		31853	10723	18401	18901							-0.0041127615718323796
YLPEWKENIMK	11	Unmodified	_YLPEWKENIMK_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.25148389063327	3	484.251484	1449.73262	2.5913	0.0012548	-3.222	-0.0015603	-0.63073	-0.00030543	484.24946121066284	16.227	0.047924	16.214	16.19	16.238	-0.012995	1392	31	0.780288	0.018510759	0.77876854	473.25363	0	11.22702						54	3	2	NaN	NaN	NaN	0.76251	1	19407	19407		3.3044	0	1	6317			31854	5776	18402	18902	25392	25392					0.02574526585476633
YLPEWKENIMK	11	Unmodified	_YLPEWKENIMK_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	484.25148389063327	3	484.251484	1449.73262	2.6759	0.0012958	-1.1943	-0.00057835	1.4815	0.00071743	484.2499533743611	16.299	0.047976	16.286	16.286	16.334	-0.012993	1389	28	0.7821392	0.016658783	0.78061974	474.37637	0	10.10376						50	3	2	NaN	NaN	NaN	0.73309	1	19408	19408		5.2847	0.74135	1	4916.3			31855	5776	18402	18902	25393	25393					0.02574526585476633
YLPKQFLN	8	Unmodified	_YLPKQFLN_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.78710993155005	2	511.78711	1021.55967	1.5932	0.00081536	-1.3682	-0.00070022	0.22497	0.00011514	511.7861189465109	20.573	0.096315	20.573	20.549	20.646	0	1443	61	0.7487872	0.037101984	0.7487872	303.9638	0	15.061249						152	5	3	NaN	NaN	NaN	0.80071	1	9443	9443		9.1232	0	1	26324	+		31856	13105	18403	18903	25394	25394					0.04974948311235039
YLPKQFLN	8	Unmodified						0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.78711	1021.55967	1.5932	0.00081536	-1.3682	-0.00070022	0.22497	0.00011514	511.7861189465109	20.573	0.096315	20.573	20.549	20.646	0	1443	61	0.7487872	0.037101984	0.7487872	303.9638		15.061249	-0.041282	-7.3557E-05	0.0016871	NaN	9.1232	152	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26324	+		31857	13105	18403	18903							0.04974948311235039
YLPKQFLN	8	Unmodified						0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	511.78711	1021.55967	0.8672	0.00044382	-1.156	-0.00059164	-0.28883	-0.00014782	511.78642276890224	20.67	0.1206	20.656	20.608	20.728	-0.014086	1446	46	0.7469324	0.027821898	0.74541295	303.21085		11.294098	0.041282	0.0001436	-0.0016871	NaN	9.1232	165	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20313	+		31858	13105	18403	18903							0.04974948311235039
YLPLALFNW	9	Unmodified	_YLPLALFNW_					0	0	0			REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.81058502785	2	568.810585	1135.60662	0.92153	0.00052417	0.31865	0.00018125	1.2402	0.00070543	568.8106540867939	37.963	0.14414	37.963	37.915	38.059	0	1218	55	0.8873258	0.033110976	0.8873258	359.72104	0	13.423157						106	7	2	NaN	NaN	NaN	0.42773	1	14305	14305		12.588	3.6688	1	8449.8	+		31859	12683	18404	18904	25395	25395					0.04423807862372087
YLPLALFNW	9	Unmodified						0	0	0			REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	568.810585	1135.60662	0.92153	0.00052417	0.31865	0.00018125	1.2402	0.00070543	568.8106540867939	37.963	0.14414	37.963	37.915	38.059	0	1218	55	0.8873258	0.033110976	0.8873258	359.72104		13.423157	-0.0004751	0.0020092	0.0016796	NaN	12.588	106	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8449.8	+		31860	12683	18404	18904							0.04423807862372087
YLPLALFNW	9	Unmodified						0	0	0			REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	REV__ENST00000538010.5_1_12:122497565-122497964:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.810585	1135.60662	1.5048	0.00085594	-3.1127	-0.0017705	-1.6079	-0.0009146	568.8083977407315	37.961	0.12019	37.964	37.916	38.036	0.0034256	1221	55	0.885486	0.0331074	0.88396657	358.97522		13.421722	0.0004751	-0.0018944	-0.0016796	NaN	12.588	83	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6356	+		31861	12683	18404	18904							0.04423807862372087
YLPPLFWRF	9	Unmodified	_YLPPLFWRF_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8396768183001	2	619.839677	1237.6648	0.23361	0.0001448	-3.0435	-0.0018865	-2.8098	-0.0017417	619.8375243219948	33.527	0.28956	33.525	33.452	33.742	-0.0018501	1119	79	0.9479278	0.047682643	0.94640833	383.9087	0	19.31137						571	13	4	NaN	NaN	NaN	0.056143	1	16741	16741		44.302	17.571	1	83194			31862	1756	18405	18905	25396	25396					0.055474895076486064
YLPPLFWRF	9	Unmodified						0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.839677	1237.6648	0.6969	0.00043196	-4.2133	-0.0026116	-3.5164	-0.0021796	619.8368294779561	33.456	0.24121	33.456	33.407	33.648	0	1122	73	0.9460945	0.04402423	0.9460945	383.16623		17.829742	-0.034593	-0.00079701	-0.00015691	NaN	44.302	491	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76860			31863	1756	18405	18905							0.055474895076486064
YLPQLFYHL	9	Unmodified	_YLPQLFYHL_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3213168896501	2	597.321317	1192.62808	0.72885	0.00043536	-0.012092	-7.2227E-06	0.71676	0.00042813	597.3204901030456	29.593	0.21718	29.586	29.538	29.755	-0.0070667	1161	97	0.9222442	0.05873698	0.92072475	373.66245	0	23.798248						387	10	3	NaN	NaN	NaN	0.3389	1	15617	15617		16.417	1.2413	1	43108			31864	1729	18406	18906	25397	25397					0.0394719289108707
YLQDKIYEV	9	Unmodified	_YLQDKIYEV_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.8056966152	2	585.805697	1169.59684	2.2171	0.0012988	0.9477	0.00055517	3.1648	0.001854	585.8073840485716	23.055	0.096289	23.055	23.031	23.128	0	1152	70	0.92775106	0.04223311	0.92775106	375.9783	0	17.115326						151	5	3	NaN	NaN	NaN	0.63698	1	15473	15473		3.9685	0.7569	1	13924			31865	4481	18407	18907	25398	25398					0.018825750663154395
YLQDKIYEV	9	Unmodified						0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	585.805697	1169.59684	1.7164	0.0010055	4.776	0.0027978	6.4924	0.0038033	585.8094248651147	23.103	0.12046	23.09	23.041	23.162	-0.013294	1149	52	0.92958635	0.031205654	0.9280669	376.72202		12.646332	0.017129	0.0024349	0.0001579	NaN	3.9685	100	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9356			31866	4481	18407	18907							0.018825750663154395
YLQGVLESQL	10	Unmodified	_YLQGVLESQL_					0	0	0			REV__nc|ENSG00000087470|O00429-7|DNM1L	REV__nc|ENSG00000087470|O00429-7|DNM1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.31114613385	2	575.311146	1148.60774	1.6737	0.00096292	-3.6308	-0.0020888	-1.9571	-0.0011259	575.3089908039584	23.416	0.16893	23.403	23.355	23.524	-0.013294	1191	61	0.90387505	0.036762178	0.9023556	366.38037	0	14.901337						198	8	3	NaN	NaN	NaN	0.507	1	14264	14264		19.164	0.045272	1	27017	+		31867	8699	18408	18908	25399	25399					0.03937977440614304
YLQILWCFTAF	11	Unmodified	_YLQILWCFTAF_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	702.8546665680001	2	702.854667	1403.69478	1.2072	0.00084851	-2.3251	-0.0016342	-1.1179	-0.00078573	703.3541561302039	34.589	0.19303	34.589	34.469	34.662	0	1059	49	0.98455137	0.02926737	0.98455137	398.2205	0	11.837738						142	9	3	NaN	NaN	NaN	0.72685	1	20095	20095		5.6942	1.384	1	9290.2			31868	1020	18409	18909	25400	25400					0.009080603906795659
YLQIRAYRI	9	Unmodified	_YLQIRAYRI_					0	0	0			REV__nc|ENSG00000187257|Q6PCB5-2|RSBN1L	REV__nc|ENSG00000187257|Q6PCB5-2|RSBN1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	399.2363854864334	3	399.236385	1194.68733	1.2985	0.0005184	-9.9877	-0.0039874	-8.6892	-0.003469	399.23249486127713	21.729	0.16849	21.715	21.667	21.836	-0.013897	1449	43	0.74507743	0.025971413	0.743558	452.80737	0	15.78363						205	8	4	NaN	NaN	NaN	0.12945	1	15673	15673		27.296	0.24976	1	33077	+		31869	11023	18410	18910	25401	25401					0.09777088905275377
YLQTICAAF	9	Unmodified	_YLQTICAAF_					0	0	0			REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5073796071	1	1029.50738	1028.5001	1.0647	0.0010961	0.086814	8.9376E-05	1.1515	0.0011854	1029.5082476475854	36.998	0.14424	37	36.952	37.096	0.0022507	87	61	1.5670487	0.035336137	1.5655292	318.04062	0	7.1716614						213	7	3	NaN	NaN	NaN	0.41766	1	9513	9513		13.003	1.4544	1	22935	+		31870	13285	18411	18911	25402	25402					-0.013006906944610819
YLRDFLRYWRI	11	Unmodified	_YLRDFLRYWRI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2964153633001	3	534.296415	1599.86742	1.7018	0.00090926	-5.9559	-0.0031822	-4.2541	-0.002273	534.293274114275	20.525	0.048105	20.525	20.525	20.573	0	1338	31	0.81357855	0.018476725	0.81357855	493.00735	0	11.196442						38	3	2	NaN	NaN	NaN	0.78088	1	20749	20749		0.087362	0.064063	1	4321.2			31871	1260	18412	18912	25403	25403					0.09147767842273424
YLRGQRLG	8	Unmodified	_YLRGQRLG_					0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	962.5530246668002	1	962.553025	961.545748	1.7795	0.0017128	7.7541	0.0074637	9.5335	0.0091765	962.5603724621333	29.884	0.048271	29.884	29.86	29.908	0	237	34	1.4784646	0.019541264	1.4784646	300.33832	0	3.9696655						40	3	2	NaN	NaN	NaN	0.82797	1	7383	7383		5.4659	0	1	3459	+		31872	10259	18413	18913	25404	25404					0.06343715602804423
YLRGQRLG	8	Unmodified						0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	962.553025	961.545748	1.7795	0.0017128	7.7541	0.0074637	9.5335	0.0091765	962.5603724621333	29.884	0.048271	29.884	29.86	29.908	0	237	34	1.4784646	0.019541264	1.4784646	300.33832		3.9696655	0.0039968	0.00076451	0.00075972	NaN	5.4659	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3459	+		31873	10259	18413	18913							0.06343715602804423
YLRGQRLG	8	Unmodified						0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	962.553025	961.545748	1.6207	0.00156	6.1798	0.0059483	7.8004	0.0075083	962.5589459995267	29.883	0.048262	29.876	29.852	29.9	-0.0070667	237	43	1.4784646	0.024872065	1.4769452	300.33832		5.0525513	-0.0039968	-0.00075082	-0.00075972	NaN	5.4659	55	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4335	+		31874	10259	18413	18913							0.06343715602804423
YLRLAEKIC	9	Unmodified	_YLRLAEKIC_					0	0	0			REV__ENSG00000187048|ENST00000310638|CYP4A11	REV__ENSG00000187048|ENST00000310638|CYP4A11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.8128017533	2	554.812802	1107.61105	1.3576	0.0007532	-5.635	-0.0031264	-4.2774	-0.0023732	554.8104403058209	20.069	0.072067	20.069	20.045	20.117	0	1191	31	0.90387505	0.018379092	0.90387505	366.5412	0	7.453125						61	4	2	NaN	NaN	NaN	0.61413	1	13188	13188		4.9097	1.34	1	5887.3	+		31875	10234	18414	18914	25405	25405					0.0615494901362581
YLRLAEKIC	9	Unmodified						0	0	0			REV__ENSG00000187048|ENST00000310638|CYP4A11	REV__ENSG00000187048|ENST00000310638|CYP4A11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.812802	1107.61105	1.3576	0.0007532	-5.635	-0.0031264	-4.2774	-0.0023732	554.8104403058209	20.069	0.072067	20.069	20.045	20.117	0	1191	31	0.90387505	0.018379092	0.90387505	366.5412		7.453125	0	0	0	NaN	4.9097	61	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5887.3	+		31876	10234	18414	18914							0.0615494901362581
YLRRATTPVCV	11	Unmodified	_YLRRATTPVCV_					0	0	0			REV__ENSG00000270885|ENST00000603017|RASL10B	REV__ENSG00000270885|ENST00000603017|RASL10B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	426.9044185197333	3	426.904419	1277.69143	1.6929	0.00072269	1.8583	0.00079332	3.5512	0.001516	426.9059833204859	17.69	0.07184	17.676	17.604	17.676	-0.013786	1410	34	0.76917666	0.02037841	0.7676573	467.10687	0	12.375458						71	4	2	NaN	NaN	NaN	0.688	1	17558	17558		3.5945	0	1	6304.8	+		31877	11411	18415	18915	25406	25406					0.06368810336675779
YLRTLQELI	9	Unmodified	_YLRTLQELI_					0	0	0			REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.8373310946001	2	574.837331	1147.66011	2.1009	0.0012076	-2.7726	-0.0015938	-0.67174	-0.00038614	574.8362879327997	26.239	0.096514	26.239	26.191	26.288	0	1170	46	0.91673553	0.027549326	0.91673553	371.59692	0	11.167053						84	5	2	NaN	NaN	NaN	0.048656	1	14740	14740		47.482	2.3166	1	34412	+		31878	10677	18416	18916	25407	25407					0.0921856057423156
YLRTLQELI	9	Unmodified	_YLRTLQELI_					0	0	0			REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.8373310946001	2	574.837331	1147.66011	1.5081	0.00086691	-8.3874	-0.0048214	-6.8793	-0.0039545	574.8282351756613	26.287	0.16887	26.276	26.228	26.397	-0.011137	1170	61	0.91673553	0.036726475	0.9152161	371.59695	0	14.886993						161	8	3	NaN	NaN	NaN	0.13602	1	14244	14244		30.61	7.4925	1	38895	+		31879	10677	18416	18916	25408	25408					0.0921856057423156
YLRTLQELI	9	Unmodified						0	0	0			REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	574.837331	1147.66011	2.1009	0.0012076	-2.7726	-0.0015938	-0.67174	-0.00038614	574.8362879327997	26.239	0.096514	26.239	26.191	26.288	0	1170	46	0.91673553	0.027549326	0.91673553	371.59692		11.167053	-0.018451	0.0026068	0.00075972	NaN	47.482	84	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34412	+		31880	10677	18416	18916							0.0921856057423156
YLRTLQELI	9	Unmodified						0	0	0			REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	REV__ENST00000509033.1_1_4:140036086-140036467:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	574.837331	1147.66011	1.5081	0.00086691	-8.3874	-0.0048214	-6.8793	-0.0039545	574.8282351756613	26.287	0.16887	26.276	26.228	26.397	-0.011137	1170	61	0.91673553	0.036726475	0.9152161	371.59695		14.886993	0.018451	-0.0038483	-0.00075972	NaN	47.482	161	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38895	+		31881	10677	18416	18916							0.0921856057423156
YLSCERTHPED	11	Unmodified	_YLSCERTHPED_					0	0	0		nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;ENST00000434140.5_2_3:46717393-46723043:-|nuORF	nc|ENSG00000178038|Q60I27-2|ALS2CL	nc|ENSG00000178038|Q60I27-2|ALS2CL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.29315873345	2	675.293159	1348.57176	1.0027	0.00067713	-0.78366	-0.0005292	0.21907	0.00014794	675.2922706047827	32.635	0.19308	32.635	32.563	32.756	0	1110	55	0.95342636	0.032982588	0.95342636	385.7851	0	13.345734						173	9	2	NaN	NaN	NaN	0.69801	1	19522	19522		7.5876	0.60324	1	17140			31882	5099	18417	18917	25409	25409					-0.08857847798549301
YLSFVEICY	9	Unmodified	_YLSFVEICY_					0	0	0		ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.7702682366	2	568.770268	1135.52598	0.98841	0.00056218	-2.2521	-0.0012809	-1.2637	-0.00071874	569.2698273324006	37.915	0.096134	37.915	37.891	37.987	0	1215	37	0.8891654	0.022073984	0.8891654	360.46713	0	8.9487915						86	5	3	NaN	NaN	NaN	0.51184	1	14290	14290		9.1232	0.87838	1	5071.9			31883	5030	18418	18918	25410	25410					-0.03635841242839888
YLSGGGGG	8	Unmodified	_YLSGGGGG_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	334.15592858305007	2	334.155929	666.297304	1.482	0.00049523	1.8892	0.0006313	3.3712	0.0011265	334.157609495875	37.506	0.313	37.506	37.386	37.699	0	1530	109	0.6949163	0.06698692	0.6949163	284.0857	0	27.384644						1140	14	6	NaN	NaN	NaN	0.84945	1	2474	2474		0	0	1	344180	+		31884	10763	18419	18919	25411	25411					-0.04919252704689825
YLSGQGEGKS	10	Unmodified	_YLSGQGEGKS_					0	0	0			REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	REV__ENST00000472524.1_1_11:64122844-64124563:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1025.4898152875	1	1025.48982	1024.48254	1.8389	0.0018857	-11.143	-0.011427	-9.304	-0.0095412	1026.4807189429405	29.232	0.072411	29.232	29.184	29.256	0	207	55	1.496219	0.031947732	1.496219	303.68118	0	6.484314						95	4	3	NaN	NaN	NaN	0.74854	1	9544	9544		4.7291	0.76056	1	11704	+		31885	12330	18420	18920	25412	25412					-0.028723146957418066
YLSHTGGKML	10	Unmodified	_YLSHTGGKML_					0	0	0		nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.7867839680501	2	553.786784	1105.55902	1.0654	0.00059002	2.7328	0.0015134	3.7982	0.0021034	553.7890270445108	21.248	0.096359	21.248	21.175	21.272	0	1173	52	0.91489893	0.031222522	0.91489893	371.02005	0	12.661743						88	5	2	NaN	NaN	NaN	0.67523	1	13085	13085		9.746	0.78402	1	7363.2			31886	7912	18421	18921	25413	25413					0.010457855998993182
YLSIGSLV	8	Unmodified	_YLSIGSLV_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	851.4872960920002	1	851.487296	850.48002	1.8257	0.0015545	-3.3282	-0.0028339	-1.5025	-0.0012794	851.484808161787	30.294	0.072397	30.294	30.246	30.318	0	468	40	1.3411216	0.023284197	1.3411216	272.94025	0	4.7387085						65	4	2	NaN	NaN	NaN	0.8439	1	5394	5394		3.1533	1.483	1	5333.2	+		31887	11050	18422	18922	25414	25414					0.04879881637248218
YLSIGSLV	8	Unmodified						0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	851.487296	850.48002	1.8257	0.0015545	-3.3282	-0.0028339	-1.5025	-0.0012794	851.484808161787	30.294	0.072397	30.294	30.246	30.318	0	468	40	1.3411216	0.023284197	1.3411216	272.94025		4.7387085	0.015747	0.00044082	0.0016553	NaN	3.1533	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5333.2	+		31888	11050	18422	18922							0.04879881637248218
YLSIGSLV	8	Unmodified						0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	851.487296	850.48002	1.2638	0.0010761	-4.3607	-0.0037131	-3.0969	-0.002637	851.4836555592717	30.269	0.072361	30.263	30.263	30.335	-0.0064106	471	49	1.3393306	0.028656006	1.3378111	272.5757		5.83197	-0.015747	-0.00043835	-0.0016553	NaN	3.1533	54	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4440.3	+		31889	11050	18422	18922							0.04879881637248218
YLSKGGYVLI	10	Unmodified	_YLSKGGYVLI_					0	0	0		tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.8211497141501	2	556.82115	1111.62775	2.0407	0.0011363	-0.49879	-0.00027774	1.5419	0.00085854	556.8206393831474	26.094	0.28961	26.094	26.046	26.336	0	1197	64	0.9001988	0.038606524	0.9001988	365.03418	0	15.65509						360	13	4	NaN	NaN	NaN	0.040041	1	13354	13354		55.413	2.6334	1	98781			31890	13913	18423	18923	25415	25415					0.07639773171240449
YLSKTMEL	8	Oxidation (M)	_YLSKTM(Oxidation (M))EL_		YLSKTM(1)EL		YLSKTM(45)EL	0	0	1			REV__CLCN3|p.W116L|1|0.67|ENSG00000109572|chr4:169687686-169687686|G/T|missense_variant	REV__CLCN3|p.W116L|1|0.67|ENSG00000109572|chr4:169687686-169687686|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1000.5019598782003	1	1000.50196	999.494683	1.4859	0.0014867	-4.7213	-0.0047237	-3.2354	-0.003237	1000.4974584028189	32.682	0.36198	32.679	32.558	32.92	-0.0031052	204	109	1.4979934	0.06386173	1.496474	304.14224	0	12.966034						720	16	3	NaN	NaN	NaN	0.26796	1	8382	8382		44.638	15.04	1	167660	+		31891	8243	18424	18924	25416	25416		647			-0.005084142769078426
YLSKTYWWRGI	11	Unmodified	_YLSKTYWWRGI_					0	0	0		ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant;ENSG00000066422|ENST00000312938|ZBTB11	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	736.88788660865	2	736.887887	1471.76122	0.61495	0.00045315	-1.7003	-0.001253	-1.0854	-0.00079981	736.8873915351788	35.361	0.072388	35.361	35.337	35.41	0	990	31	1.0265712	0.018248796	1.0265712	415.02878	0	7.3777466						86	4	3	NaN	NaN	NaN	0.6085	1	20482	20482		13.463	3.8514	1	6813.8			31892	704	18425	18925	25417	25417					0.04421012276930014
YLSLVQKTLY	10	Unmodified	_YLSLVQKTLY_					0	0	0		nc|ENSG00000198182|Q96SK3-3|ZNF607;ENSG00000198182|ENST00000355202|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.9043014777334	3	409.904301	1226.69108	1.6792	0.00068829	-10.101	-0.0041403	-8.4214	-0.003452	410.23494494748337	20.213	0.048065	20.213	20.213	20.261	0	1482	28	0.72465914	0.016716719	0.72465914	440.26755	0	10.1562805						34	3	2	NaN	NaN	NaN	0.75556	1	17158	17158		4.2489	2.8649	1	2038.5			31893	5761	18426	18926	25418	25418					0.08679713888500373
YLSMRLLL	8	Oxidation (M)	_YLSM(Oxidation (M))RLLL_		YLSM(1)RLLL		YLSM(42)RLLL	0	0	1			REV__ENST00000379965.7_1_11:5730878-5731055:+|nuORF	REV__ENST00000379965.7_1_11:5730878-5731055:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1024.5859642791004	1	1024.58596	1023.57869	1.2773	0.0013087	8.2138	0.0084158	9.4911	0.0097245	1024.5946000568022	31.138	0.024122	31.133	31.109	31.133	-0.0050716	123	103	1.5458313	0.06014788	1.5443119	313.75436	0	12.208099						84	2	2	NaN	NaN	NaN	0.3042	1	9352	9352		41.785	9.3317	1	24650	+		31894	11960	18427	18927	25419	25419		654			0.06784161610664796
YLSWLAQIAVY	11	Unmodified	_YLSWLAQIAVY_					0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	442.90793449016667	3	442.907934	1325.70197	1.2928	0.00057258	-10.103	-0.0044749	-8.8106	-0.0039023	442.90304019443784	21.994	0.072239	21.994	21.946	22.019	0	1404	31	0.77288127	0.018520832	0.77288127	469.1751	0	11.243011						64	4	2	NaN	NaN	NaN	0.73455	1	19185	19185		3.5945	1.7044	1	5850.5	+		31895	12099	18428	18928	25420	25420					0.05215116262752417
YLTDGALGLY	10	Unmodified	_YLTDGALGLY_					0	0	0			REV__nc|ENSG00000105219|Q9H8S5-2|CCNP	REV__nc|ENSG00000105219|Q9H8S5-2|CCNP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.2793146892001	2	543.279315	1084.54408	1.1026	0.00059899	-1.6466	-0.00089458	-0.54408	-0.00029559	543.2786595371502	34.131	0.28944	34.131	34.083	34.372	0	1212	52	0.8910048	0.031273186	0.8910048	361.41644	0	12.685272						228	13	4	NaN	NaN	NaN	0.26902	1	12165	12165		29.598	0	1	41521	+		31896	8951	18429	18929	25421	25421					0.005186170035358373
YLTEKYVWRWK	11	Unmodified	_YLTEKYVWRWK_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	786.42209356675	2	786.422094	1570.82963	1.715	0.0013487	4.3471	0.0034186	6.0621	0.0047674	786.9250822293321	27.156	0.048267	27.146	27.122	27.17	-0.010126	945	58	1.0539193	0.034611344	1.0523999	425.83487	0	13.98465						85	3	3	NaN	NaN	NaN	0.76654	1	19707	19707		2.5994	0.89725	1	5091.5			31897	2533	18430	18930	25422	25422					0.06705256856798769
YLTGFALDI	9	Unmodified	_YLTGFALDI_					0	0	0		nc|ENSG00000163393|Q8IZD6-2|SLC22A15;ENSG00000163393|ENST00000369503|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.5349745661	1	1012.53497	1011.5277	1.7101	0.0017316	4.5525	0.0046095	6.2626	0.0063411	1012.5403430287678	29.859	0.072393	29.852	29.779	29.852	-0.0070648	141	49	1.5352125	0.028331876	1.5336931	311.64844	0	5.7513733						78	4	2	NaN	NaN	NaN	0.56671	1	8873	8873		6.8632	1.9535	1	5476.9			31898	4226	18431	18931	25423	25423					0.02239535837418316
YLTIPTARS	9	Unmodified	_YLTIPTARS_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.2874740723	2	511.287474	1020.5604	2.4342	0.0012446	-2.9416	-0.001504	-0.50733	-0.00025939	511.2860271433847	18.53	0.071918	18.516	18.492	18.564	-0.01395	1281	37	0.84864825	0.022121787	0.8471288	344.50604	0	8.980255						45	4	2	NaN	NaN	NaN	0.66822	1	9209	9209		1.9246	0	1	3171.6			31899	6156	18432	18932	25424	25424					0.05093742960275449
YLTIPTARS	9	Unmodified						0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	511.287474	1020.5604	2.7394	0.0014006	-1.7149	-0.00087681	1.0245	0.0005238	511.2823725256605	18.484	0.023998	18.484	18.484	18.508	0	1278	28	0.85049206	0.016590416	0.85049206	345.25452		6.7348022	-0.015655	0.00043143	0.0016816	NaN	1.9246	40	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2625.7			31900	6156	18432	18932							0.05093742960275449
YLTMASLVT	9	Unmodified	_YLTMASLVT_					0	0	0			REV__ENST00000323646.9_1_11:63342359-63342416:-|nuORF	REV__ENST00000323646.9_1_11:63342359-63342416:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.5226953203002	1	998.522695	997.515419	1.2046	0.0012028	-1.9513	-0.0019484	-0.74664	-0.00074553	998.5203702572893	33.02	0.14463	33.018	32.993	33.138	-0.0024796	171	58	1.5174994	0.033678055	1.51598	308.1109	0	6.8379517						175	7	3	NaN	NaN	NaN	0.55027	1	8303	8303		7.5404	1.2902	1	15975	+		31901	11727	18433	18933	25425	25425					0.016561761027446664
YLTMASLVT	9	Unmodified						0	0	0			REV__ENST00000323646.9_1_11:63342359-63342416:-|nuORF	REV__ENST00000323646.9_1_11:63342359-63342416:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	998.522695	997.515419	1.2046	0.0012028	-1.9513	-0.0019484	-0.74664	-0.00074553	998.5203702572893	33.02	0.14463	33.018	32.993	33.138	-0.0024796	171	58	1.5174994	0.033678055	1.51598	308.1109		6.8379517	-0.013881	0.00094928	0.00012645	NaN	7.5404	175	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15975	+		31902	11727	18433	18933							0.016561761027446664
YLTMDIYAFP	10	Unmodified	_YLTMDIYAFP_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.2966501625999	2	617.29665	1232.57875	0.99434	0.0006138	8.2053	0.0050651	9.1997	0.0056789	617.8024152059697	27.422	0.16899	27.422	27.302	27.471	0	1146	73	0.93142134	0.04404801	0.93142134	377.24075	0	17.840149						189	8	2	NaN	NaN	NaN	0.72631	1	17334	17334		6.2502	0.55606	1	36190			31903	4062	18434	18934	25426	25426					-0.02823883180053599
YLTRYCMN	8	Unmodified	_YLTRYCMN_					0	0	0			REV__ENST00000577226.5_1_17:27235747-27235900:-|nuORF	REV__ENST00000577226.5_1_17:27235747-27235900:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.2386123549501	2	532.238612	1062.46267	2.1201	0.0011284	-1.2489	-0.0006647	0.87119	0.00046368	532.2387578077935	26.36	0.072386	26.36	26.312	26.384	0	1299	76	0.8375814	0.04610449	0.8375814	339.835	0	18.706146						158	4	3	NaN	NaN	NaN	0.83211	1	11210	11210		4.9097	0.94122	1	17508	+		31904	9052	18435	18935	25427	25427					-0.06606105231730908
YLTSHALCGLS	11	Unmodified	_YLTSHALCGLS_					0	0	0		ENST00000303924.4_1_8:122625978-122626098:-|nuORF	ENST00000303924.4_1_8:122625978-122626098:-|nuORF	ENST00000303924.4_1_8:122625978-122626098:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	582.78952362225	2	582.789524	1163.56449	0.84419	0.00049199	-2.5237	-0.0014708	-1.6795	-0.00097878	582.7864361329879	35.192	0.0965	35.192	35.168	35.265	0	1221	67	0.885486	0.040451527	0.885486	358.87173	0	16.394287						112	5	2	NaN	NaN	NaN	0.64343	1	15267	15267		11.17	0.56537	1	10249			31905	6418	18436	18936	25428	25428					-0.010745356083134538
YLTVAAVF	8	Unmodified	_YLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.4923814699	1	883.492381	882.485105	1.4119	0.0012474	-1.3141	-0.001161	0.097835	8.6436E-05	883.4893346834017	30.753	0.048277	30.753	30.728	30.777	0	339	43	1.4179583	0.024956703	1.4179583	288.41122	0	5.076172						54	3	2	NaN	NaN	NaN	0.78605	1	5835	5835		11.091	1.0391	1	3510.3			31906	5542;1496	18437	18937	25429	25429					0.03916185499849689
YLTVAAVF	8	Unmodified	_YLTVAAVF_					0	0	0		ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF	ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.4923814699	1	883.492381	882.485105	1.718	0.0015178	0.20868	0.00018436	1.9266	0.0017022	883.492230916423	30.752	0.048225	30.746	30.722	30.77	-0.0057545	333	40	1.4215236	0.023172855	1.4200041	289.13638	0	4.7133484						52	3	2	NaN	NaN	NaN	0.76633	1	5714	5714		13.737	3.6855	1	4309.5			31907	5542;1496	18437	18937	25430	25430					0.03916185499849689
YLTYLQYAR	9	Unmodified	_YLTYLQYAR_					0	0	0			REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.8138559983	2	595.813856	1189.61316	1.4507	0.00086434	-1.0542	-0.00062811	0.39648	0.00023623	595.8126744484011	22.645	0.096493	22.645	22.621	22.718	0	1152	52	0.92775106	0.031205654	0.92775106	375.90454	0	12.64386						109	5	2	NaN	NaN	NaN	0.31737	1	16147	16147		17.799	1.9771	1	22296	+		31908	9609	18438	18938	25431	25431					0.025937010230791202
YLTYLQYAR	9	Unmodified						0	0	0			REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	595.813856	1189.61316	1.4507	0.00086434	-1.0542	-0.00062811	0.39648	0.00023623	595.8126744484011	22.645	0.096493	22.645	22.621	22.718	0	1152	52	0.92775106	0.031205654	0.92775106	375.90454		12.64386	-0.0049872	6.6007E-05	-0.0001579	NaN	17.799	109	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22296	+		31909	9609	18438	18938							0.025937010230791202
YLTYLQYAR	9	Unmodified						0	0	0			REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	REV__ENST00000479572.1_1_6:90331643-90337989:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.813856	1189.61316	0.95008	0.00056607	-1.1615	-0.00069202	-0.2114	-0.00012595	595.8126958737782	22.669	0.1447	22.655	22.631	22.776	-0.01354	1149	40	0.92958635	0.023855448	0.9280669	376.64816		9.66571	0.0049872	-6.1824E-05	0.0001579	NaN	17.799	123	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21090	+		31910	9609	18438	18938							0.025937010230791202
YLVHIEHL	8	Unmodified	_YLVHIEHL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.2847344181	2	512.284734	1022.55492	1.605	0.0008222	-2.3243	-0.0011907	-0.71929	-0.00036848	512.2840437752301	20.814	0.048134	20.814	20.79	20.838	0	1410	40	0.76917666	0.024083614	0.76917666	312.2367	0	9.776398						87	3	3	NaN	NaN	NaN	0.65075	1	9465	9465		22.126	2.8416	1	9715.7			31911	4780	18439	18939	25432	25432					0.04454064168453442
YLVHIEHL	8	Unmodified						0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.284734	1022.55492	0.82589	0.00042309	-0.87801	-0.00044979	-0.052115	-2.6698E-05	512.2845690712327	20.911	0.14447	20.897	20.849	20.993	-0.014086	1410	40	0.76917666	0.024083614	0.7676573	312.2367		9.776398	0.041256	0.0006039	-0.00075972	NaN	22.126	114	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9819.8			31912	4780	18439	18939							0.04454064168453442
YLVKMDKLKE	10	Unmodified	_YLVKMDKLKE_					0	0	0			REV__ENST00000527781.1_1_11:113186979-113196409:+|nuORF	REV__ENST00000527781.1_1_11:113186979-113196409:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.90905809630004	3	422.909058	1265.70534	1.5042	0.00063614	-4.3664	-0.0018466	-2.8622	-0.0012104	422.9067571160759	23.803	0.14453	23.803	23.73	23.875	0	1407	61	0.77102906	0.037065744	0.77102906	468.27917	0	22.511627						168	7	2	NaN	NaN	NaN	0.68669	1	18131	18131		4.6175	0	1	18540	+		31913	9992	18440	18940	25433	25433					0.0831204304511175
YLVPFTLLP	9	Unmodified	_YLVPFTLLP_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.6233956429	1	1062.6234	1061.61612	1.4504	0.0015412	0.26416	0.0002807	1.7145	0.0018219	1062.622605164509	37.287	0.096279	37.289	37.193	37.289	0.0022507	57	52	1.5847093	0.030011892	1.5831898	321.49216	0	6.0885315						70	5	2	NaN	NaN	NaN	0.034898	1	10942	10942		53.324	0	1	4735.2			31914	3972	18441	18941	25434	25434					0.08777576147895161
YLVPYALSVG	10	Unmodified	_YLVPYALSVG_					0	0	0		ENSG00000152779|ENST00000371790|SLC16A12	ENSG00000152779|ENST00000371790|SLC16A12	ENSG00000152779|ENST00000371790|SLC16A12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1081.592823796	1	1081.59282	1080.58555	1.1507	0.0012445	3.6208	0.0039162	4.7714	0.0051608	1082.599568187204	36.278	0.1447	36.278	36.157	36.302	0	60	52	1.582944	0.030014992	1.582944	321.06168	0	6.0878296						118	7	2	NaN	NaN	NaN	0.6337	1	12026	12026		12.588	0	1	9034			31915	3789	18442	18942	25435	25435					0.04847797762840855
YLVYAILWS	9	Unmodified	_YLVYAILWS_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.31041785235	2	564.310418	1126.60628	1.8581	0.0010485	3.6043	0.0020339	5.4624	0.0030825	564.3124258938186	25.033	0.096508	25.033	25.009	25.105	0	1167	49	0.91857195	0.029377997	0.91857195	372.4239	0	11.91098						93	5	3	NaN	NaN	NaN	0.51184	1	13975	13975		9.1232	0.16122	1	16288			31916	5678;276	18443	18943	25436	25436					0.04804388142520111
YLVYAILWS	9	Unmodified						0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	564.310418	1126.60628	1.5299	0.00086335	2.3908	0.0013491	3.9207	0.0022125	564.3117478578308	25.057	0.024126	25.045	25.021	25.045	-0.012011	1167	43	0.91857195	0.025711298	0.9170525	372.4239		10.424316	0.0059414	-0.00082028	-0.00075972	NaN	9.1232	48	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10948			31917	5678;276	18443	18943							0.04804388142520111
YLWLIVLFT	9	Unmodified	_YLWLIVLFT_					0	0	0			REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3442606697	2	584.344261	1166.67397	2.0228	0.001182	-4.9802	-0.0029101	-2.9574	-0.0017281	584.3417437487122	28.508	0.072407	28.508	28.484	28.556	0	1173	31	0.91489893	0.018367171	0.91489893	370.7807	0	7.4436646						66	4	3	NaN	NaN	NaN	0.65818	1	15384	15384		2.7852	0.60885	1	4199.4	+		31918	13226	18444	18944	25437	25437					0.09729838073303654
YLWPVKMGSI	10	Unmodified	_YLWPVKMGSI_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3230022988502	2	597.323002	1192.63145	1.2598	0.00075251	-4.9506	-0.0029571	-3.6908	-0.0022046	597.3197057190195	29.57	0.26552	29.57	29.474	29.739	0	1158	97	0.92408	0.05873698	0.92408	374.40628	0	23.798279						424	12	4	NaN	NaN	NaN	0.27719	1	16230	16230		28.896	2.164	1	46943	+		31919	8411	18445	18945	25438	25438					0.042841196734570985
YLWPVKMGSI	10	Unmodified						0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	597.323002	1192.63145	1.2598	0.00075251	-4.9506	-0.0029571	-3.6908	-0.0022046	597.3197057190195	29.57	0.26552	29.57	29.474	29.739	0	1158	97	0.92408	0.05873698	0.92408	374.40628		23.798279	-0.0081247	-0.001115	0.0016776	NaN	28.896	424	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46943	+		31920	8411	18445	18945							0.042841196734570985
YLWQYMPTW	9	Oxidation (M)	_YLWQYM(Oxidation (M))PTW_		YLWQYM(1)PTW		YLWQYM(44)PTW	0	0	1		nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	nc|ENSG00000100612|Q9Y394-2|DHRS7	nc|ENSG00000100612|Q9Y394-2|DHRS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.29444182465	2	652.294442	1302.57433	2.0717	0.0013514	-11.243	-0.0073335	-9.1709	-0.0059821	652.2884046772846	30.101	0.19311	30.101	30.053	30.246	0	1119	82	0.9479278	0.049492598	0.9479278	383.69763	0	20.033356						605	9	7	NaN	NaN	NaN	0.056143	1	18819	18819		44.302	15.636	1	284520			31921	1264	18446	18946	25439	25439		136			-0.06485347602938418
YLYEHNFAFF	10	Unmodified	_YLYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	675.81131330935	2	675.811313	1349.60807	1.0539	0.00071222	-7.2797	-0.0049197	-6.2258	-0.0042075	676.3088593990738	20.862	0.1686	20.862	20.79	20.959	0	1086	40	0.9680805	0.023804069	0.9680805	391.7116	0	9.631775						163	8	4	NaN	NaN	NaN	0.69717	1	19538	19538		8.2448	1.9946	1	15284			31922	639	18447	18947	25440	25440					-0.05274602839540421
YLYIKSEFY	9	Unmodified	_YLYIKSEFY_					0	0	0			REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	409.2095020339333	3	409.209502	1224.60668	3.2143	0.0013153	1.5776	0.00064557	4.7919	0.0019609	409.21029240377595	17.834	0.047966	17.82	17.772	17.82	-0.013786	1509	25	0.70793515	0.014873028	0.7064157	430.11493	0	9.036316						25	3	2	NaN	NaN	NaN	0.60102	1	16406	16406		5.4499	0.43306	1	1608.7	+		31923	12054	18448	18948	25441	25441					0.003357630717118809
YLYIKSEFY	9	Unmodified						0	0	0			REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	409.209502	1224.60668	1.8378	0.00075204	0.42382	0.00017343	2.2616	0.00092547	409.20893764745466	17.669	0.071917	17.669	17.669	17.741	0	1509	34	0.70793515	0.02044928	0.70793515	430.11493		12.424225	-0.075435	-0.00087285	0.00075972	NaN	5.4499	48	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3608.8	+		31924	12054	18448	18948							0.003357630717118809
YLYIKSEFY	9	Unmodified						0	0	0			REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	REV__ENST00000407997.3_1_22:39483592-39483709:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	409.209502	1224.60668	3.2143	0.0013153	1.5776	0.00064557	4.7919	0.0019609	409.21029240377595	17.834	0.047966	17.82	17.772	17.82	-0.013786	1509	25	0.70793515	0.014873028	0.7064157	430.11493		9.036316	0.075435	0.00054357	-0.00075972	NaN	5.4499	25	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1608.7	+		31925	12054	18448	18948							0.003357630717118809
YLYNTWDLMG	10	Unmodified	_YLYNTWDLMG_					0	0	0		ENST00000450288.3_1_16:15112706-15116561:+|nuORF	ENST00000450288.3_1_16:15112706-15116561:+|nuORF	ENST00000450288.3_1_16:15112706-15116561:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.2893564467499	2	638.289356	1274.56416	1.7113	0.0010923	-2.5453	-0.0016247	-0.83404	-0.00053236	638.2875327906917	27.76	0.14476	27.76	27.736	27.881	0	1134	70	0.9387595	0.04216945	0.9387595	380.07413	0	17.07309						120	7	2	NaN	NaN	NaN	0.507	1	18303	18303		19.164	1.3833	1	15865			31926	7036	18449	18949	25442	25442					-0.06213955328189513
YLYNWNDEY	9	Unmodified	_YLYNWNDEY_					0	0	0		tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.18038255249996	3	427.180383	1278.51932	1.5589	0.00066591	-9.5826	-0.0040935	-8.0238	-0.0034276	427.1775479079694	14.957	0.072073	14.957	14.933	15.005	0	1434	22	0.75435036	0.012976527	0.75435036	458.10004	0	7.880371						40	4	2	NaN	NaN	NaN	0.67696	1	18383	18383		1.1768	0.25801	1	2109.3			31927	13943	18450	18950	25443	25443					-0.1088006286986456
YLYSPLEI	8	Unmodified	_YLYSPLEI_					0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5240755287999	1	997.524076	996.516799	2.3888	0.0023829	-9.0455	-0.0090231	-6.6567	-0.0066402	997.516793154104	25.901	0.072411	25.89	25.865	25.938	-0.0116	237	61	1.4784646	0.0355314	1.4769452	300.18945	0	7.2143555						99	4	2	NaN	NaN	NaN	0.65075	1	8273	8273		22.126	0	1	11029			31928	2835	18451	18951	25444	25444					0.018401334631334976
YLYTSKLSFSS	11	Unmodified	_YLYTSKLSFSS_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19;ENST00000570049.5_1_16:67335149-67360610:-|nuORF;ENST00000566392.5_1_16:67336668-67360655:-|nuORF	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.5554493903667	3	432.555449	1294.64452	1.4857	0.00064266	3.7919	0.0016402	5.2776	0.0022829	432.55762644735773	18.746	0.14396	18.731	18.66	18.804	-0.014059	1407	37	0.77102906	0.022227407	0.7695096	468.16632	0	13.496399						121	7	3	NaN	NaN	NaN	0.54514	1	17839	17839		9.0037	0	1	11560			31929	4633	18452	18952	25445	25445					0.008982292665223213
YLYVDKNFI	9	Unmodified	_YLYVDKNFI_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9-TXN2|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.8107819931	2	587.810782	1173.60701	1.7423	0.0010242	-2.0014	-0.0011765	-0.25909	-0.0001523	587.8091597276133	23.851	0.072218	23.851	23.803	23.875	0	1194	49	0.902037	0.029409707	0.902037	365.5429	0	11.91803						87	4	2	NaN	NaN	NaN	0.38313	1	15605	15605		14.425	1.4222	1	24312			31930	1231	18453	18953	25446	25446					0.027151827915531612
YLYYGGPE	8	Unmodified	_YLYYGGPE_					0	0	0		nc|ENSG00000151136|A6QL63-4|ABTB3;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-4|ABTB3	nc|ENSG00000151136|A6QL63-4|ABTB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	481.2187258051	2	481.218726	960.422899	1.8448	0.00088773	4.4746	0.0021533	6.3193	0.003041	481.2205787089783	34.202	0.096569	34.201	34.153	34.249	-0.0012474	1521	37	0.70049703	0.022319257	0.6989776	284.6013	0	9.067963						67	5	2	NaN	NaN	NaN	0.66957	1	7193	7193		20.952	5.7771	1	6030.4			31931	3723	18454	18954	25447	25447					-0.0588958563913593
YMDLVDGIF	9	Unmodified	_YMDLVDGIF_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5019598781998	1	1072.50196	1071.49468	1.1475	0.0012307	-2.6871	-0.0028819	-1.5396	-0.0016512	1072.4991220286843	41.811	0.19233	41.811	41.762	41.955	0	210	49	1.4944444	0.028392076	1.4944444	303.14413	0	5.759247						172	9	3	NaN	NaN	NaN	0.094712	1	11617	11617		36.586	9.8549	1	11444			31932	439	18455	18955	25448	25448					-0.03820414276947304
YMDPAWMEFER	11	Unmodified	_YMDPAWMEFER_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	737.8101300660999	2	737.81013	1473.60571	1.1751	0.000867	-2.9054	-0.0021436	-1.7303	-0.0012766	737.8082125234021	30.197	0.12067	30.19	30.142	30.263	-0.0064106	1053	55	0.9882094	0.032925725	0.98669	399.51498	0	13.311279						163	6	3	NaN	NaN	NaN	0.72342	1	19493	19493		5.9198	3.3203	1	16116	+		31933	9101	18456	18956	25449	25449					-0.11215142631181152
YMEGVNPFI	9	Unmodified	_YMEGVNPFI_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1069.5022942291998	1	1069.50229	1068.49502	0.86264	0.0009226	-3.2038	-0.0034264	-2.3411	-0.0025038	1069.498778750796	38.396	0.19221	38.396	38.348	38.54	0	210	46	1.4944444	0.026621819	1.4944444	303.15497	0	5.4003296						196	9	3	NaN	NaN	NaN	0.14301	1	11480	11480		29.598	0	1	17059			31934	3526	18457	18957	25450	25450					-0.03648994557079277
YMFSGYGIDF	10	Unmodified	_YMFSGYGIDF_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2575250021	2	600.257525	1198.5005	1.3867	0.00083238	-1.6567	-0.00099446	-0.27002	-0.00016208	600.2559865278967	23.754	0.14449	23.754	23.706	23.851	0	1212	49	0.8910048	0.029438376	0.8910048	360.98505	0	11.926758						153	7	3	NaN	NaN	NaN	0.76892	1	16410	16410		3.2116	0	1	12708	+		31935	8982	18458	18958	25451	25451					-0.09081315765274667
YMLEPWERTVF	11	Unmodified	_YMLEPWERTVF_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	735.85793753845	2	735.857938	1469.70132	1.2339	0.000908	-8.6787	-0.0063863	-7.4448	-0.0054783	736.3529539291543	30.463	0.14478	30.463	30.439	30.584	0	984	40	1.03022	0.023717046	1.03022	416.50946	0	9.588623						119	7	3	NaN	NaN	NaN	0.54514	1	20465	20465		16.858	4.2886	1	10512			31936	4400	18459	18959	25452	25452					-0.014740464486294513
YMRFLFASAGK	11	Unmodified	_YMRFLFASAGK_					0	0	0			REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.89363093276665	3	430.893631	1289.65906	1.0355	0.00044619	7.4958	0.0032299	8.5313	0.0036761	430.8970622772959	22.259	0.072344	22.246	22.246	22.318	-0.013731	1422	31	0.7617651	0.018532872	0.7602457	462.56012	0	11.253571						75	4	3	NaN	NaN	NaN	0.76654	1	17766	17766		0.88464	0.17642	1	7560.7	+		31937	11828	18460	18960	25453	25453					0.025820229336659395
YMSPTDGP	8	Unmodified	_YMSPTDGP_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	867.3552956410001	1	867.355296	866.348019	0.95234	0.00082601	6.2015	0.0053789	7.1538	0.0062049	867.3611731158771	27.035	0.21722	27.025	26.977	27.194	-0.010124	366	73	1.4019053	0.04284215	1.4003859	285.22754	0	8.716553						280	10	3	NaN	NaN	NaN	0.75682	1	5475	5475		15.013	8.2189	1	26725			31938	10973	18461	18961	25454	25454					-0.09050091442009034
YMSPTDGP	8	Unmodified						0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	867.355296	866.348019	1.4577	0.0012643	3.9672	0.003441	5.4249	0.0047053	867.3589056925391	27.036	0.21722	27.036	26.988	27.205	0	366	61	1.4019053	0.03569424	1.4019053	285.22754		7.262268	0.005428	-0.0012328	0.00075972	NaN	15.013	266	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27891			31939	10973	18461	18961							-0.09050091442009034
YMSPTDGP	8	Unmodified						0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	867.355296	866.348019	0.95234	0.00082601	6.2015	0.0053789	7.1538	0.0062049	867.3611731158771	27.035	0.21722	27.025	26.977	27.194	-0.010124	366	73	1.4019053	0.04284215	1.4003859	285.22754		8.716553	-0.005428	0.00070514	-0.00075972	NaN	15.013	280	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26725			31940	10973	18461	18961							-0.09050091442009034
YMSRRFTK	8	Unmodified	_YMSRRFTK_					0	0	0		nc|ENSG00000197050|Q8TAQ5-2|ZNF420	nc|ENSG00000197050|Q8TAQ5-2|ZNF420	nc|ENSG00000197050|Q8TAQ5-2|ZNF420	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.78711831905	2	544.787118	1087.55968	1.9433	0.0010587	-3.0008	-0.0016348	-1.0576	-0.00057614	544.7844269310322	19.588	0.04801	19.588	19.54	19.588	0	1260	31	0.8615505	0.018422842	0.8615505	349.45682	0	7.4725647						30	3	2	NaN	NaN	NaN	0.8439	1	12282	12282		3.1533	0.36816	1	2041.2			31941	8008	18462	18962	25455	25455					0.01940625039560473
YMVRYGQIFQ	10	Unmodified	_YMVRYGQIFQ_					0	0	0			REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.8264404448	2	652.82644	1303.63833	0.33218	0.00021685	-8.3838	-0.0054732	-8.0517	-0.0052563	653.3171195203785	32.079	0.096546	32.075	32.027	32.123	-0.0037613	1134	49	0.9387595	0.029340029	0.93724006	379.98328	0	11.876007						86	5	3	NaN	NaN	NaN	0.70677	1	18000	18000		7.5876	2.6779	1	9755.6	+		31942	10943	18463	18963	25456	25456					-0.0013456744600262027
YNAEIYELTE	10	Unmodified	_YNAEIYELTE_					0	0	0			REV__nc|ENSG00000106692|O75072-2|FKTN	REV__nc|ENSG00000106692|O75072-2|FKTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.7877008273	2	622.787701	1243.56085	1.8609	0.001159	3.2225	0.0020069	5.0835	0.0031659	622.7898694039419	25.177	0.26536	25.165	24.996	25.262	-0.012011	1131	121	0.94059354	0.07336587	0.93907416	380.91843	0	29.711456						1004	12	4	NaN	NaN	NaN	0.27719	1	16872	16872		28.896	3.0946	1	645550	+		31943	8998	18464	18964	25457	25457					-0.05118926901195664
YNAFIVLKV	9	Unmodified	_YNAFIVLKV_					0	0	0			REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.8184100599501	2	533.81841	1065.62227	2.4366	0.0013007	-4.0564	-0.0021654	-1.6198	-0.00086471	533.8158832886438	32.875	0.024101	32.872	32.848	32.872	-0.0031052	1227	28	0.88180584	0.016563535	0.8802864	357.76474	0	6.7201233						23	2	2	NaN	NaN	NaN	0.61413	1	11119	11119		4.9097	0.49665	1	1353.9	+		31944	12282	18465	18965	25458	25458					0.0920809437943717
YNALGMYDQAV	11	Unmodified	_YNALGMYDQAV_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	622.78443824435	2	622.784438	1243.55432	2.1355	0.00133	7.2788	0.0045332	9.4144	0.0058631	622.7892530823965	25.178	0.19304	25.178	25.081	25.274	0	1131	124	0.94059354	0.07519597	0.94059354	380.91843	0	30.452606						912	9	4	NaN	NaN	NaN	0.15564	1	17613	17613		34.454	2.0012	1	597220			31945	1203	18466	18966	25459	25459					-0.057711433335725815
YNALGMYDQAV	11	Unmodified						0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.784438	1243.55432	1.861	0.001159	8.4612	0.0052695	10.322	0.0064285	622.7898694039419	25.177	0.26536	25.165	24.996	25.262	-0.012011	1131	121	0.94059354	0.07336587	0.93907416	380.91843		29.711456	-0.0061263	0.00096491	-0.00075972	NaN	34.454	1004	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645550			31946	1203	18466	18966							-0.057711433335725815
YNALYGLGLL	10	Unmodified	_YNALYGLGLL_					0	0	0		ENSG00000183128|ENST00000369783|CALHM3	ENSG00000183128|ENST00000369783|CALHM3	ENSG00000183128|ENST00000369783|CALHM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.8054996499501	2	548.8055	1095.59645	1.0804	0.00059293	6.768	0.0037143	7.8484	0.0043073	549.3107906790322	27.301	0.12063	27.291	27.242	27.363	-0.010126	1233	91	0.87812483	0.055250645	0.8766054	356.14685	0	22.408356						174	6	3	NaN	NaN	NaN	0.29898	1	12340	12340		27.789	2.8278	1	34149			31947	5296	18467	18967	25460	25460					0.052472001371370425
YNANIMDHIAD	11	Unmodified	_YNANIMDHIAD_					0	0	0		ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	ENSG00000115155|ENST00000272371|OTOF	ENSG00000115155|ENST00000272371|OTOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	638.7849695606001	2	638.78497	1275.55539	1.8797	0.0012007	-3.9821	-0.0025437	-2.1024	-0.001343	638.7819268801748	23.947	0.21706	23.934	23.837	24.054	-0.013048	1137	64	0.9369253	0.038535774	0.93540585	379.32837	0	15.601776						210	10	3	NaN	NaN	NaN	0.62211	1	17515	17515		12.57	1.9647	1	21151			31948	1993	18468	18968	25461	25461					-0.07136928964632716
YNAVTPHDYQ	10	Unmodified	_YNAVTPHDYQ_					0	0	0		HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant;ENSG00000176635|ENST00000336726|HORMAD2	HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant	HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.2725522896001	2	604.272552	1206.53055	0.65902	0.00039822	2.0557	0.0012422	2.7148	0.0016405	604.273127786441	30.655	0.21712	30.649	30.553	30.77	-0.0057545	1170	58	0.91673553	0.034892023	0.9152161	371.38156	0	14.135223						211	10	3	NaN	NaN	NaN	0.65442	1	15977	15977		11.17	0	1	20131			31949	5032	18469	18969	25462	25462					-0.06445240775701677
YNCYEDALF	9	Unmodified	_YNCYEDALF_					0	0	0			REV__nc|ENSG00000196460|Q6ZV50-2|RFX8	REV__nc|ENSG00000196460|Q6ZV50-2|RFX8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.23150721685	2	569.231507	1136.44846	0.93973	0.00053493	0.91716	0.00052208	1.8569	0.001057	569.2322489604555	34.347	0.16862	34.346	34.298	34.466	-0.0012474	1248	46	0.8689189	0.027623832	0.86739945	352.25577	0	11.198547						162	8	4	NaN	NaN	NaN	0.56671	1	13848	13848		6.8632	1.1691	1	18792	+		31950	11104	18470	18970	25463	25463					-0.11430479179034592
YNCYEDALF	9	Unmodified						0	0	0			REV__nc|ENSG00000196460|Q6ZV50-2|RFX8	REV__nc|ENSG00000196460|Q6ZV50-2|RFX8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.231507	1136.44846	0.93973	0.00053493	0.91716	0.00052208	1.8569	0.001057	569.2322489604555	34.347	0.16862	34.346	34.298	34.466	-0.0012474	1248	46	0.8689189	0.027623832	0.86739945	352.25577		11.198547	-0.0012258	0.0008877	-0.00075972	NaN	6.8632	162	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18792	+		31951	11104	18470	18970							-0.11430479179034592
YNDQFWKE	8	Unmodified	_YNDQFWKE_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	565.251088566	2	565.251089	1128.48762	1.176	0.00066472	-6.8027	-0.0038452	-5.6267	-0.0031805	565.2466949922067	12.82	0.12011	12.82	12.748	12.868	0	1260	82	0.8615505	0.049706757	0.8615505	349.29825	0	20.152588						122	6	2	NaN	NaN	NaN	0.80191	1	14016	14016		8.962	1.3744	1	7591	+		31952	10138	18471	18971	25464	25464					-0.07148010833157059
YNDQFWKE	8	Unmodified						0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	565.251089	1128.48762	1.176	0.00066472	-6.8027	-0.0038452	-5.6267	-0.0031805	565.2466949922067	12.82	0.12011	12.82	12.748	12.868	0	1260	82	0.8615505	0.049706757	0.8615505	349.29825		20.152588	0.087474	-0.0010404	0.00075972	NaN	8.962	122	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7591	+		31953	10138	18471	18971							-0.07148010833157059
YNDQFWKE	8	Unmodified						0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.251089	1128.48762	2.515	0.0014216	-4.6496	-0.0026282	-2.1347	-0.0012066	565.2488477847626	12.654	0.024031	12.645	12.621	12.645	-0.0088415	1260	28	0.8615505	0.016583264	0.8600311	349.29825		6.723358	-0.087474	0.0013936	-0.00075972	NaN	8.962	29	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1683.2	+		31954	10138	18471	18971							-0.07148010833157059
YNELVKNL	8	Unmodified	_YNELVKNL_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	992.5411225765	1	992.541123	991.533846	1.3779	0.0013676	-5.7866	-0.0057434	-4.4087	-0.0043758	992.5359549914198	34.01	0.14484	34.01	33.986	34.131	0	183	55	1.510409	0.031903744	1.510409	306.6965	0	6.478241						114	7	2	NaN	NaN	NaN	0.83913	1	8277	8277		3.9685	0	1	9753.4	+		31955	9597	18472	18972	25465	25465					0.037740540689469526
YNELVKNL	8	Unmodified						0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	992.541123	991.533846	1.3779	0.0013676	-5.7866	-0.0057434	-4.4087	-0.0043758	992.5359549914198	34.01	0.14484	34.01	33.986	34.131	0	183	55	1.510409	0.031903744	1.510409	306.6965		6.478241	0.001237	0.0017781	-0.00012673	NaN	3.9685	114	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9753.4	+		31956	9597	18472	18972							0.037740540689469526
YNELVKNL	8	Unmodified						0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	992.541123	991.533846	1.2587	0.0012494	-8.8201	-0.0087543	-7.5614	-0.007505	992.5308190668488	34.009	0.072426	34.008	33.984	34.056	-0.0012474	180	52	1.5121819	0.03013289	1.5106624	307.05652		6.1186523	-0.001237	-0.0012328	0.00012673	NaN	3.9685	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10999	+		31957	9597	18472	18972							0.037740540689469526
YNFEDLSASFR	11	Unmodified	_YNFEDLSASFR_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.8120415908498	2	674.812042	1347.60953	0.71824	0.00048467	-8.8298	-0.0059585	-8.1116	-0.0054738	674.8057832951511	31.549	0.1931	31.549	31.501	31.694	0	1110	70	0.95342636	0.042142153	0.95342636	385.78793	0	17.052094						357	9	3	NaN	NaN	NaN	0.54514	1	19511	19511		16.858	4.2886	1	60688			31958	5812	18473	18973	25466	25466					-0.05037013541459601
YNFRCESSGFL	11	Unmodified	_YNFRCESSGFL_					0	0	0		ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	ENST00000314358.9_1_5:137761200-137762880:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	661.7953372816501	2	661.795337	1321.57612	1.1496	0.0007608	-0.58949	-0.00039012	0.5601	0.00037067	661.7955723310488	32.273	0.072372	32.273	32.225	32.297	0	1128	55	0.9424274	0.032996833	0.9424274	381.4136	0	13.354279						84	4	2	NaN	NaN	NaN	0.69656	1	19126	19126		7.6826	4.1128	1	7423.9			31959	6460	18474	18974	25467	25467					-0.07180338584976198
YNFRWWYSG	9	Unmodified	_YNFRWWYSG_					0	0	0			REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.78817256405	2	639.788173	1277.56179	2.5267	0.0016166	1.4084	0.00090106	3.9351	0.0025176	639.7901723423219	22.67	0.024109	22.67	22.645	22.67	0	1146	28	0.93142134	0.016511738	0.93142134	377.09366	0	6.684906						24	2	2	NaN	NaN	NaN	0.55027	1	18367	18367		7.5404	2.6306	1	1398.1	+		31960	12261	18475	18975	25468	25468					-0.06588622950971512
YNGILIDVK	9	Unmodified	_YNGILIDVK_					0	0	0			REV__tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1	REV__tr|U7SFN1|U7SFN1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02312PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.5880727690999	1	1034.58807	1033.5808	1.0347	0.0010705	5.6807	0.0058772	6.7154	0.0069477	1034.5940901664442	32.827	0.048267	32.824	32.8	32.848	-0.0031052	117	49	1.5493695	0.028298855	1.54785	314.43204	0	5.7430115						64	3	2	NaN	NaN	NaN	0.33629	1	9737	9737		16.584	1.4088	1	13927	+		31961	13381	18476	18976	25469	25469					0.06534913620089355
YNIAFTAMQMA	11	Unmodified	_YNIAFTAMQMA_					0	0	0			REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.7912090314501	2	630.791209	1259.56787	2.0514	0.001294	-6.3958	-0.0040344	-4.3444	-0.0027404	630.787417226766	23.875	0.26513	23.875	23.778	24.044	0	1143	109	0.9332562	0.06607914	0.9332562	377.89426	0	26.756805						656	12	5	NaN	NaN	NaN	0.085722	1	17983	17983		40.957	4.7221	1	336330	+		31962	8972	18477	18977	25470	25470					-0.05153608825958145
YNIAFTAMQMA	11	Unmodified	_YNIAFTAMQMA_					0	0	0			REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.7912090314501	2	630.791209	1259.56787	2.0047	0.0012646	-7.0155	-0.0044253	-5.0108	-0.0031608	630.786772429259	23.899	0.43414	23.886	23.813	24.247	-0.01305	1143	103	0.9332562	0.06239456	0.93173677	377.89426	0	25.264832						778	19	4	NaN	NaN	NaN	0.085722	1	17210	17210		40.957	9.2814	1	380050	+		31963	8972	18477	18977	25471	25471					-0.05153608825958145
YNIAFTAMQMA	11	Unmodified	_YNIAFTAMQMA_					0	0	0			REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.7912090314501	2	630.791209	1259.56787	1.463	0.00092285	-5.9397	-0.0037467	-4.4767	-0.0028238	631.2888135893866	25.081	0.16884	25.069	24.996	25.165	-0.012011	1101	100	0.95892316	0.060517013	0.9574037	388.28732	0	24.504578						306	8	3	NaN	NaN	NaN	0.67772	1	17211	17211		8.9191	0.67428	1	31036	+		31964	8972	18477	18977	25472	25472					-0.05153608825958145
YNIAFTAMQMA	11	Unmodified						0	0	0			REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.791209	1259.56787	2.0514	0.001294	-6.3958	-0.0040344	-4.3444	-0.0027404	630.787417226766	23.875	0.26513	23.875	23.778	24.044	0	1143	109	0.9332562	0.06607914	0.9332562	377.89426		26.756805	-0.0054315	0.00050859	0.00075972	NaN	40.957	656	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336330	+		31965	8972	18477	18977							-0.05153608825958145
YNIAFTAMQMA	11	Unmodified						0	0	0			REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	REV__ENST00000467160.1_1_19:19756233-19756817:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	630.791209	1259.56787	2.0047	0.0012646	-7.0155	-0.0044253	-5.0108	-0.0031608	630.786772429259	23.899	0.43414	23.886	23.813	24.247	-0.01305	1143	103	0.9332562	0.06239456	0.93173677	377.89426		25.264832	0.0054315	-0.00027326	-0.00075972	NaN	40.957	778	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380050	+		31966	8972	18477	18977							-0.05153608825958145
YNICHLNYFTF	11	Unmodified	_YNICHLNYFTF_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	717.8291800989999	2	717.82918	1433.64381	1.1025	0.00079144	-7.1572	-0.0051377	-6.0547	-0.0043462	718.3246228648032	27.495	0.048277	27.495	27.446	27.495	0	1062	43	0.9827221	0.025611699	0.9827221	397.3996	0	10.357025						63	3	2	NaN	NaN	NaN	0.15564	1	20292	20292		34.454	11.368	1	9405.9			31967	1720	18478	18978	25473	25473					-0.0556688865419801
YNICHLNYFTF	11	Unmodified						0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	717.82918	1433.64381	0.92396	0.00066324	-7.0967	-0.0050942	-6.1727	-0.004431	717.8238030325022	27.542	0.14479	27.533	27.533	27.677	-0.0095501	1059	49	0.98455137	0.02927047	0.9830319	398.13934		11.836609	0.018963	2.1404E-05	0.00015493	NaN	34.454	231	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23500			31968	1720	18478	18978							-0.0556688865419801
YNIGTNFEM	9	Unmodified	_YNIGTNFEM_					0	0	0		ENSG00000088451|ENST00000261296|TGDS	ENSG00000088451|ENST00000261296|TGDS	ENSG00000088451|ENST00000261296|TGDS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1088.4717223823	1	1088.47172	1087.46445	0.95862	0.0010434	-8.5004	-0.0092525	-7.5418	-0.008209	1088.4630578056249	28.797	0.28962	28.789	28.644	28.933	-0.0083504	135	79	1.5387528	0.046029568	1.5372335	312.0737	0	9.335205						392	13	3	NaN	NaN	NaN	0.055351	1	11950	11950		44.638	2.3209	1	54311			31969	1018	18479	18979	25474	25474					-0.07578772942110845
YNIKRRYNF	9	Unmodified	_YNIKRRYNF_					0	0	0			REV__tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1	REV__tr|U7SXR4|U7SXR4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00932PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3436462805	2	637.343646	1272.67274	1.211	0.00077181	-0.54242	-0.00034571	0.66856	0.0004261	637.3437138438284	32.441	0.16892	32.438	32.39	32.558	-0.0031052	1116	61	0.94976085	0.036663115	0.9482414	384.53433	0	14.843994						261	8	4	NaN	NaN	NaN	0.18779	1	17463	17463		26.115	4.0892	1	43079	+		31970	13551	18480	18980	25475	25475					0.04731016757114048
YNINFESFLI	10	Unmodified	_YNINFESFLI_					0	0	0			REV__ENSG00000113272|ENST00000231198|THG1L	REV__ENSG00000113272|ENST00000231198|THG1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.3189711659501	2	630.318971	1258.62339	1.6528	0.0010418	-8.1068	-0.0051099	-6.454	-0.0040681	630.3140154628534	29.667	0.24134	29.667	29.57	29.811	0	1161	76	0.9222442	0.0458709	0.9222442	373.43832	0	18.574219						303	11	3	NaN	NaN	NaN	0.507	1	17966	17966		19.164	0.045272	1	41066	+		31971	9146	18481	18981	25476	25476					0.0044226395766600035
YNISLKEVMQ	10	Unmodified	_YNISLKEVMQ_					0	0	0		ENST00000481054.5_1_3:183861194-183861371:+|nuORF;ENST00000484154.1_1_3:183860616-183861371:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENSG00000145191|ENST00000648915|EIF2B5	ENST00000481054.5_1_3:183861194-183861371:+|nuORF	ENST00000481054.5_1_3:183861194-183861371:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8182810617001	2	612.818281	1223.62201	1.1842	0.00072573	5.1726	0.0031699	6.3569	0.0038956	612.821222487029	17.138	0.19193	17.124	17.076	17.268	-0.013569	1158	46	0.92408	0.027537405	0.9225606	374.29776	0	11.153992						181	9	3	NaN	NaN	NaN	0.63397	1	16379	16379		12.57	0.52101	1	21913			31972	3506	18482	18982	25477	25477					0.01914306597268478
YNKFQLDW	8	Unmodified	_YNKFQLDW_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	557.2718240081	2	557.271824	1112.5291	0.71675	0.00039942	-3.8251	-0.0021316	-3.1083	-0.0017322	557.2693756273455	31.476	0.24137	31.471	31.423	31.664	-0.0044155	1218	58	0.8873258	0.034952402	0.8858064	359.81055	0	14.173187						205	11	2	NaN	NaN	NaN	0.80692	1	12991	12991		8.2903	1.4271	1	44676	+		31973	9133	18483	18983	25478	25478					-0.022668300738359903
YNKNRAAFK	9	Unmodified	_YNKNRAAFK_					0	0	0			REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.30398980375	2	556.30399	1110.59343	1.3399	0.00074538	-0.58544	-0.00032568	0.75444	0.0004197	556.3034261238597	26.577	0.12066	26.566	26.518	26.639	-0.010645	1170	88	0.91673553	0.05331379	0.9152161	371.7441	0	21.619202						120	6	2	NaN	NaN	NaN	0.47587	1	12937	12937		10.605	0.85897	1	8142.5	+		31974	13155	18484	18984	25479	25479					0.04255369802990572
YNKNTTAKY	9	Unmodified	_YNKNTTAKY_					0	0	0		ENST00000373425.7_1_9:129850849-129851203:-|nuORF	ENST00000373425.7_1_9:129850849-129851203:-|nuORF	ENST00000373425.7_1_9:129850849-129851203:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.5527498953	1	1102.55275	1101.54547	1.1782	0.001299	0.99153	0.0010932	2.1697	0.0023922	1102.5531164950473	32.465	0.21717	32.462	32.365	32.583	-0.0031052	60	85	1.582944	0.04945481	1.5814246	320.98462	0	10.02832						337	10	3	NaN	NaN	NaN	0.39244	1	12571	12571		14.042	3.4366	1	31551			31975	6675	18485	18985	25480	25480					-0.0012374890770843194
YNKWILYYL	9	Unmodified	_YNKWILYYL_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.89725835353335	3	425.897258	1274.66995	1.4858	0.0006328	-3.8884	-0.001656	-2.4026	-0.0010232	425.8959744466827	21.681	0.072279	21.681	21.681	21.754	0	1431	37	0.75620437	0.022246659	0.75620437	459.2407	0	13.510345						77	4	3	NaN	NaN	NaN	0.46215	1	18317	18317		11.17	4.04	1	6982.6	+		31976	11294	18486	18986	25481	25481					0.043597485796226465
YNLFGFRETP	10	Unmodified	_YNLFGFRETP_					0	0	0			REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.3089377959001	2	622.308938	1242.60332	0.21736	0.00013527	5.6992	0.0035466	5.9165	0.0036819	622.313989734268	31.5	0.12069	31.495	31.495	31.616	-0.0044174	1155	52	0.92591566	0.031205654	0.9243962	374.97736	0	12.637695						128	6	2	NaN	NaN	NaN	0.50283	1	16852	16852		19.336	0.17285	1	15699	+		31977	12586	18487	18987	25482	25482					-0.008274869822798792
YNLFGFRETP	10	Unmodified						0	0	0			REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	622.308938	1242.60332	0.85662	0.00053308	8.9187	0.0055502	9.7753	0.0060833	622.3135413741634	31.742	0.024141	31.742	31.742	31.766	0	1164	49	0.9204082	0.02936846	0.9204082	372.74695		11.893646	0.12343	0.0020461	-0.001994	NaN	19.336	45	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5002.9	+		31978	12586	18487	18987							-0.008274869822798792
YNLFGFRETP	10	Unmodified						0	0	0			REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	REV__ENST00000518547.5_2_8:125740268-125740424:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	622.308938	1242.60332	0.21736	0.00013527	5.6992	0.0035466	5.9165	0.0036819	622.313989734268	31.5	0.12069	31.495	31.495	31.616	-0.0044174	1155	52	0.92591566	0.031205654	0.9243962	374.97736		12.637695	-0.12343	-0.001961	0.001994	NaN	19.336	128	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15699	+		31979	12586	18487	18987							-0.008274869822798792
YNLFIENAFR	10	Unmodified	_YNLFIENAFR_					0	0	0		tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.83003737875	2	643.830037	1285.64552	1.5967	0.001028	-9.955	-0.0064093	-8.3583	-0.0053813	643.822361066989	32.635	0.12069	32.635	32.587	32.707	0	1098	52	0.960755	0.03113848	0.960755	388.9435	0	12.605804						166	6	3	NaN	NaN	NaN	0.63397	1	18533	18533		12.57	4.2922	1	20690			31980	14002	18488	18988	25483	25483					0.014124884260809267
YNLQEVRHWLE	11	Unmodified	_YNLQEVRHWLE_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000422005.7_2_14:80669058-80669397:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.2527638321333	3	496.252764	1485.73646	0.77701	0.0003856	6.2754	0.0031142	7.0524	0.0034998	496.25662359738624	14.692	0.24001	14.68	14.656	14.896	-0.011737	1398	43	0.77658504	0.02592069	0.7750656	470.89993	0	15.717621						170	11	2	NaN	NaN	NaN	0.76276	1	19531	19531		1.2548	0	1	28829			31981	5945	18489	18989	25484	25484					0.013023324035657424
YNLYLQTAP	9	Unmodified	_YNLYLQTAP_					0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7794818647	2	541.779482	1081.54441	1.4925	0.00080859	-2.2616	-0.0012253	-0.76915	-0.00041671	541.7790013412598	21.392	0.096157	21.378	21.33	21.426	-0.014006	1200	37	0.89836043	0.022062063	0.896841	364.41278	0	8.94928						96	5	3	NaN	NaN	NaN	0.47587	1	11734	11734		10.605	0	1	10236	+		31982	8905	18490	18990	25485	25485					0.006900367233583893
YNLYLQTAP	9	Unmodified						0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.779482	1081.54441	1.4597	0.00079086	-1.6379	-0.00088738	-0.17815	-9.6517E-05	541.7790647362476	21.392	0.14441	21.392	21.344	21.488	0	1200	40	0.89836043	0.023904443	0.89836043	364.41275		9.696655	0.0069505	0.00033236	0.00075972	NaN	10.605	97	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9691.6	+		31983	8905	18490	18990							0.006900367233583893
YNLYLQTAP	9	Unmodified						0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	541.779482	1081.54441	1.4925	0.00080859	-2.2616	-0.0012253	-0.76915	-0.00041671	541.7790013412598	21.392	0.096157	21.378	21.33	21.426	-0.014006	1200	37	0.89836043	0.022062063	0.896841	364.41278		8.94928	-0.0069505	-0.00034348	-0.00075972	NaN	10.605	96	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10236	+		31984	8905	18490	18990							0.006900367233583893
YNNDEKFY	8	Unmodified	_YNNDEKFY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1092.463266186	1	1092.46327	1091.45599	1.6944	0.0018511	0.70475	0.00076991	2.3992	0.002621	1092.4637956418321	25.153	0.096529	25.141	25.117	25.214	-0.012011	150	46	1.5299006	0.02655971	1.5283811	310.26413	0	5.3862915						132	5	3	NaN	NaN	NaN	0.80692	1	12129	12129		8.2903	2.0401	1	10790			31985	447	18491	18991	25486	25486					-0.08608003587073654
YNQCQIPQN	9	Unmodified	_YNQCQIPQN_					0	0	0		ENST00000536093.5_3_12:27475116-27475341:+|nuORF	ENST00000536093.5_3_12:27475116-27475341:+|nuORF	ENST00000536093.5_3_12:27475116-27475341:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2480229483001	2	554.248023	1106.48149	1.4401	0.00079815	1.9947	0.0011056	3.4348	0.0019037	554.2501302339506	17.117	0.072042	17.117	17.093	17.165	0	1251	58	0.8670771	0.03498262	0.8670771	351.6232	0	14.186401						96	4	2	NaN	NaN	NaN	0.47587	1	13112	13112		10.605	0.99332	1	8840.8			31986	7470	18492	18992	25487	25487					-0.06748852336295386
YNQILIVP	8	Unmodified	_YNQILIVP_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	480.2816604129	2	480.28166	958.548768	1.698	0.0008155	-2.5854	-0.0012417	-0.88747	-0.00042624	480.2805754135854	36.541	0.26494	36.543	36.422	36.687	0.0016785	1278	37	0.85049206	0.022124112	0.8489726	345.55154	0	8.988953						231	12	3	NaN	NaN	NaN	0.62311	1	7163	7163		23.85	7.4338	1	24110			31987	1274	18493	18993	25488	25488					0.06783545936946211
YNQILIVP	8	Unmodified						0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	480.28166	958.548768	1.375	0.00066038	-4.0903	-0.0019645	-2.7154	-0.0013041	480.2797709762143	36.278	0.21694	36.278	36.205	36.422	0	1281	40	0.84864825	0.023971736	0.84864825	344.80243		9.7395935	-0.13246	-0.00071547	-0.00016217	NaN	23.85	141	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15041			31988	1274	18493	18993							0.06783545936946211
YNQQHPYVP	9	Unmodified	_YNQQHPYVP_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1145.5374341820998	1	1145.53743	1144.53016	2.0922	0.0023967	-11.707	-0.013411	-9.6146	-0.011014	1146.527229939898	31.766	0.1448	31.766	31.742	31.887	0	69	67	1.5776473	0.038853288	1.5776473	319.76187	0	7.874878						235	7	3	NaN	NaN	NaN	0.55027	1	14604	14604		7.5404	0.55601	1	16515	+		31989	10151	18494	18994	25489	25489					-0.03632615704918862
YNQRRYMR	8	Unmodified	_YNQRRYMR_					0	0	0		ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	593.7985486726	2	593.798549	1185.58254	1.3257	0.00078721	-8.0798	-0.0047978	-6.7541	-0.0040106	593.7911859469932	24.888	0.24133	24.888	24.791	25.033	0	1164	100	0.9204082	0.060615063	0.9204082	372.94394	0	24.560852						371	11	3	NaN	NaN	NaN	0.77891	1	16026	16026		11.548	0	1	49171			31990	3611	18495	18995	25490	25490					-0.0028235584297817695
YNRDIAEEQLF	11	Unmodified	_YNRDIAEEQLF_					0	0	0			REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	699.33842351685	2	699.338424	1396.66229	0.83435	0.00058349	2.1432	0.0014988	2.9776	0.0020823	699.3399503756184	29.714	0.048285	29.707	29.707	29.755	-0.0070648	1095	58	0.9625867	0.03478682	0.96106726	389.35556	0	14.070892						97	3	3	NaN	NaN	NaN	0.7072	1	19097	19097		6.9844	0.55443	1	8266.9	+		31991	9959	18496	18996	25491	25491					-0.020170554786318462
YNRQFDLL	8	Unmodified	_YNRQFDLL_					0	0	0		ENST00000432059.6_2_4:147442877-147443087:-|nuORF	ENST00000432059.6_2_4:147442877-147443087:-|nuORF	ENST00000432059.6_2_4:147442877-147443087:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.77727352675	2	534.777274	1067.53999	1.0204	0.00054567	7.0858	0.0037893	8.1061	0.004335	534.7811294937321	32.827	0.072369	32.824	32.8	32.872	-0.0031052	1245	43	0.87076044	0.025780857	0.869241	353.2753	0	10.459503						74	4	2	NaN	NaN	NaN	0.76633	1	11176	11176		13.737	2.1886	1	5573.5			31992	6975	18497	18997	25492	25492					0.008925723004722386
YNTGYDYGYV	10	Unmodified	_YNTGYDYGYV_					0	0	0		RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant;ENSG00000004534|ENST00000266022|RBM6;ENST00000441115.5_1_3:50012785-50103056:+|nuORF	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	RBM6|p.P835Tfs*9|1|0.8|ENSG00000004534|chr3:50062016-50062017|-/A|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.7536610447	2	607.753661	1213.49277	1.3131	0.00079802	-3.3742	-0.0020507	-2.0611	-0.0012526	607.7528346489548	23.706	0.12045	23.693	23.621	23.741	-0.013048	1185	46	0.90755045	0.027567148	0.906031	367.63672	0	11.167084						108	6	2	NaN	NaN	NaN	0.66268	1	16141	16141		10.605	3.6206	1	12936			31993	307	18498	18998	25493	25493					-0.1054375176117901
YNVNKQCEL	9	Unmodified	_YNVNKQCEL_					0	0	0		ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	555.76604852595	2	555.766049	1109.51754	1.8946	0.0010529	-5.0493	-0.0028062	-3.1547	-0.0017533	555.76355688702	18.7	0.095911	18.7	18.7	18.796	0	1233	31	0.87812483	0.01840496	0.87812483	356.0914	0	7.4634705						66	5	2	NaN	NaN	NaN	0.58159	1	13248	13248		6.2502	0.55606	1	5306.1			31994	4248	18499	18999	25494	25494					-0.032833951594511745
YNVRTDKFR	9	Unmodified	_YNVRTDKFR_					0	0	0			REV__ENSG00000142606|ENST00000378412|MMEL1	REV__ENSG00000142606|ENST00000378412|MMEL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8200040087	2	599.820004	1197.62546	1.4077	0.00084438	-11.282	-0.0067674	-9.8746	-0.005923	599.8131704846782	16.086	0.11987	16.086	16.062	16.182	0	1146	37	0.93142134	0.022019207	0.93142134	377.36276	0	8.921051						111	6	3	NaN	NaN	NaN	0.49672	1	16399	16399		9.746	0	1	11539	+		31995	9844	18500	19000	25495	25495					0.03454737486117665
YNYCREDE	8	Unmodified	_YNYCREDE_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.409850407	1	1091.40985	1090.40257	1.2311	0.0013437	8.437	0.0092082	9.6681	0.010552	1091.4210317454083	27.06	0.072412	27.049	27.049	27.122	-0.010126	114	43	1.5511382	0.024758935	1.5496187	314.5749	0	5.0211487						90	4	2	NaN	NaN	NaN	0.55996	1	12094	12094		27.789	5.9538	1	7307.1			31996	2839	18501	19001	25496	25496					-0.1390112436124582
YNYCREDE	8	Unmodified						0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1091.40985	1090.40257	1.8355	0.0020033	7.6371	0.0083352	9.4727	0.010339	1091.41889009817	27.06	0.096586	27.06	27.036	27.133	0	111	49	1.5529068	0.028295875	1.5529068	314.93356		5.7384644	0.0054463	-0.00037117	0.001644	NaN	27.789	136	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9695.3			31997	2839	18501	19001							-0.1390112436124582
YNYVFAPLQD	10	Unmodified	_YNYVFAPLQD_					0	0	0		nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4-6|ABCA13	nc|ENSG00000179869|Q86UQ4-6|ABCA13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	615.2954960696501	2	615.295496	1228.57644	0.53799	0.00033102	3.1067	0.0019115	3.6447	0.0022426	615.2974686098914	30.221	0.096548	30.214	30.118	30.214	-0.0064106	1131	52	0.94059354	0.031178772	0.93907416	380.96942	0	12.628357						137	5	3	NaN	NaN	NaN	0.68669	1	16508	16508		8.962	2.5321	1	16557			31998	5170	18502	19002	25497	25497					-0.028705955934810845
YNYVKQWR	8	Unmodified	_YNYVKQWR_					0	0	0		ENSG00000197635|ENST00000360534|DPP4	ENSG00000197635|ENST00000360534|DPP4	ENSG00000197635|ENST00000360534|DPP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7985402851001	2	578.79854	1155.58253	2.1121	0.0012225	4.0639	0.0023522	6.1759	0.0035746	579.3031080165492	16.326	0.11993	16.326	16.302	16.422	0	1194	25	0.902037	0.014706433	0.902037	365.60913	0	5.960724						46	6	2	NaN	NaN	NaN	0.80071	1	15014	15014		9.1232	2.873	1	2609.9			31999	5719	18503	19003	25498	25498					0.010959674287050802
YNYVKWIKN	9	Unmodified	_YNYVKWIKN_					0	0	0		ENST00000463701.1_1_7:142459574-142460868:+|nuORF;ENSG00000204983|ENST00000311737|PRSS1;CON__P07477	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.329673238	2	614.329673	1226.64479	0.60844	0.00037378	-6.2777	-0.0038566	-5.6693	-0.0034828	614.3259814596787	27.204	0.1448	27.194	27.146	27.291	-0.010126	1164	73	0.9204082	0.04405272	0.91888875	372.80026	0	17.843018						147	7	2	NaN	NaN	NaN	0.49672	1	16465	16465		9.746	2.1584	1	19057		+	32000	195	18504	19004	25499	25499					0.040536937770411896
YPAEWQDFL	9	Unmodified	_YPAEWQDFL_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1168.5309518207	1	1168.53095	1167.52368	2.293	0.0026795	-1.7003	-0.0019868	0.59274	0.00069263	1168.528874581345	32.177	0.21719	32.177	32.128	32.345	0	63	61	1.5811787	0.03531742	1.5811787	320.40228	0	7.156555						273	10	3	NaN	NaN	NaN	0.026469	1	15387	15387		63.731	43.282	1	22311			32001	557	18505	19005	25500	25500					-0.05338553656270051
YPAEWQDFL	9	Unmodified	_YPAEWQDFL_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1168.5309518207	1	1168.53095	1167.52368	1.466	0.001713	0.31901	0.00037277	1.785	0.0020858	1168.5305050819527	32.175	0.19305	32.172	32.123	32.316	-0.0037613	63	58	1.5811787	0.033549786	1.5796592	320.40228	0	6.7983704						249	9	3	NaN	NaN	NaN	0.017558	1	14856	14856		75.089	42.636	1	20470			32002	557	18505	19005	25501	25501					-0.05338553656270051
YPAGAPGP	8	Unmodified	_YPAGAPGP_					0	0	0		ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	729.3566162700001	1	729.356616	728.34934	0.84316	0.00061496	0.40473	0.00029519	1.2479	0.00091016	729.3556522071082	41.738	0.048107	41.738	41.69	41.738	0	672	58	1.2188909	0.034264088	1.2188909	248.72491	0	6.9918823						93	3	2	NaN	NaN	NaN	0.84876	1	3740	3740		0.39566	0	1	6418.6			32003	4396	18506	19006	25502	25502					-0.025700892909412687
YPAGFMDVI	9	Unmodified	_YPAGFMDVI_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1012.4808305056	1	1012.48083	1011.47355	1.2654	0.0012812	0.1255	0.00012707	1.3909	0.0014082	1012.4806632242182	31.477	0.24135	31.477	31.38	31.621	0	228	100	1.4837929	0.058592796	1.4837929	301.21048	0	11.894348						415	11	2	NaN	NaN	NaN	0.021781	1	9026	9026		69.745	31.137	1	93588			32004	2615	18507	19007	25503	25503					-0.031723795857942605
YPAGFMDVI	9	Unmodified	_YPAGFMDVI_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1012.4808305056	1	1012.48083	1011.47355	1.2281	0.0012434	-0.38465	-0.00038945	0.84347	0.000854	1012.4805863375527	31.476	0.31373	31.471	31.35	31.664	-0.0044155	225	115	1.4855686	0.0674454	1.4840492	301.57095	0	13.691437						738	14	4	NaN	NaN	NaN	0.01663	1	8854	8854		76.264	49.532	1	106610			32005	2615	18507	19007	25504	25504					-0.031723795857942605
YPALLGELR	9	Unmodified	_YPALLGELR_					0	0	0		ENST00000583517.1_1_17:26368772-26370155:+|nuORF	ENST00000583517.1_1_17:26368772-26370155:+|nuORF	ENST00000583517.1_1_17:26368772-26370155:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5884071200999	1	1031.58841	1030.58113	1.7651	0.0018209	-11.139	-0.011491	-9.3741	-0.0096702	1031.5765553517333	30.27	0.072397	30.27	30.246	30.318	0	162	43	1.5228153	0.02480352	1.5228153	309.05502	0	5.0338745						74	4	2	NaN	NaN	NaN	0.56671	1	9814	9814		6.8632	0.613	1	6632.4			32006	7689	18508	19008	25505	25505					0.06706333339934645
YPALMELDLD	10	Unmodified	_YPALMELDLD_					0	0	0			REV__nc|ENSG00000100644|Q16665-2|HIF1A	REV__nc|ENSG00000100644|Q16665-2|HIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	590.2837397526	2	590.28374	1178.55293	0.84284	0.00049751	-8.2641	-0.0048782	-7.4213	-0.0043807	590.2784425761322	27.253	0.096527	27.242	27.218	27.315	-0.010126	1197	73	0.9001988	0.044128895	0.8986794	364.78024	0	17.881989						114	5	3	NaN	NaN	NaN	0.64158	1	15198	15198		12.049	3.7584	1	18612	+		32007	8826	18509	19009	25506	25506					-0.02920777422309584
YPASTVQIL	9	Unmodified	_YPASTVQIL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.5458736034001	1	991.545874	990.538597	2.6747	0.0026521	-1.8187	-0.0018033	0.85601	0.00084878	991.5443737223541	25.95	0.26547	25.95	25.877	26.143	0	255	91	1.4678029	0.053325534	1.4678029	298.0492	0	10.828186						468	12	4	NaN	NaN	NaN	0.03618	1	8242	8242		52.78	0	1	94950			32008	1319	18510	19010	25507	25507					0.04294938211717181
YPASTVQIL	9	Unmodified	_YPASTVQIL_					0	0	0		ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF;ENSG00000101361|ENST00000329276|NOP56	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	ENST00000484998.5_1_20:2635830-2636687:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	991.5458736034001	1	991.545874	990.538597	2.5218	0.0025004	-1.6159	-0.0016022	0.90589	0.00089823	991.5444235955878	25.949	0.21724	25.938	25.865	26.083	-0.0116	252	82	1.4695803	0.047985315	1.4680609	298.41013	0	9.743805						465	10	4	NaN	NaN	NaN	0.019103	1	8073	8073		73.133	35.831	1	92872			32009	1319	18510	19010	25508	25508					0.04294938211717181
YPATGADVAF	10	Unmodified	_YPATGADVAF_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|1|0.2|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4781879687	1	1011.47819	1010.47091	1.8015	0.0018222	-0.92468	-0.00093529	0.87685	0.00088691	1011.4772844568595	23.778	0.16863	23.778	23.73	23.899	0	252	52	1.4695803	0.030212998	1.4695803	298.3293	0	6.1333313						192	8	2	NaN	NaN	NaN	0.00036552	1	8993	8993		93.472	54.864	1	18439			32010	4962	18511	19011	25509	25509					-0.033905117191011414
YPATGADVAF	10	Unmodified	_YPATGADVAF_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|1|0.2|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.4781879687	1	1011.47819	1010.47091	1.8978	0.0019196	0.42957	0.0004345	2.3274	0.0023541	1011.4780782836942	23.85	0.14461	23.837	23.717	23.861	-0.013048	252	49	1.4695803	0.028434277	1.4680609	298.3293	0	5.772217						163	7	2	NaN	NaN	NaN	0.10964	1	8817	8817		44.638	21.521	1	16976			32011	4962	18511	19011	25510	25510					-0.033905117191011414
YPATGADVAF	10	Unmodified						0	0	0		ENSG00000174851|ENST00000376901|YIF1A;ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF;YIF1A|p.R131Gfs*50|1|0.2|ENSG00000174851|chr11:66287634-66287634|G/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1011.47819	1010.47091	2.7434	0.0027749	-3.7243	-0.003767	-0.98084	-0.0009921	1011.4744195679782	23.923	0.048265	23.91	23.91	23.958	-0.013048	243	43	1.4749115	0.02487731	1.473392	299.41156		5.050171	0.065617	-0.0020456	0.0019058	NaN	93.472	46	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2650.9			32012	4962	18511	19011							-0.033905117191011414
YPAVDYNL	8	Unmodified	_YPAVDYNL_					0	0	0		ENSG00000198719|ENST00000366756|DLL1;DLL1|p.V644M|1|0.32|ENSG00000198719|chr6:170283349-170283349|C/T|missense_variant	ENSG00000198719|ENST00000366756|DLL1	ENSG00000198719|ENST00000366756|DLL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	954.4567242451	1	954.456724	953.449448	1.2096	0.0011545	0.29861	0.00028501	1.5082	0.0014395	954.4568989396749	24.333	0.09651	24.333	24.333	24.43	0	279	85	1.4535767	0.049844623	1.4535767	295.31796	0	10.1267395						117	5	2	NaN	NaN	NaN	0.528	1	7160	7160		29.598	13.182	1	9385.1			32013	5796	18512	19012	25511	25511					-0.02913896747816125
YPCQDKGRCM	10	Unmodified	_YPCQDKGRCM_					0	0	0			REV__TIMD4|p.W54R|1|0.31|ENSG00000145850|chr5:156954655-156954655|A/T|missense_variant	REV__TIMD4|p.W54R|1|0.31|ENSG00000145850|chr5:156954655-156954655|A/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	400.83679945033333	3	400.836799	1199.48857	1.3055	0.00052329	-3.2642	-0.0013084	-1.9588	-0.00078514	401.1690843599306	16.11	0.11996	16.11	16.086	16.206	0	1536	49	0.69119483	0.029775143	0.69119483	420.042	0	18.094482						159	6	3	NaN	NaN	NaN	0.74854	1	16447	16447		2.239	0.71337	1	11168	+		32014	13375	18513	19013	25512	25512					-0.10319579051747496
YPDATPEEL	9	Unmodified	_YPDATPEEL_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1034.4676828619	1	1034.46768	1033.46041	1.8381	0.0019015	2.5463	0.002634	4.3844	0.0045355	1034.4696524194221	21.922	0.21683	21.922	21.778	21.994	0	246	67	1.4731345	0.03909707	1.4731345	298.96127	0	7.9344788						211	10	2	NaN	NaN	NaN	0.019103	1	9908	9908		73.133	20.375	1	27029			32015	4124	18514	19014	25513	25513					-0.05498539164182148
YPDATPEEL	9	Unmodified	_YPDATPEEL_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1034.4676828619	1	1034.46768	1033.46041	1.2937	0.0013383	0.056122	5.8056E-05	1.3499	0.0013964	1034.4667811672623	21.874	0.12032	21.86	21.764	21.884	-0.013895	249	64	1.4713576	0.03731799	1.4698381	298.60065	0	7.573395						167	6	2	NaN	NaN	NaN	0.013281	1	9703	9703		82.96	48.521	1	21601			32016	4124	18514	19014	25514	25514					-0.05498539164182148
YPDAYTTWNIL	11	Unmodified	_YPDAYTTWNIL_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	678.8271603388001	2	678.82716	1355.63977	1.2975	0.00088081	-2.0756	-0.001409	-0.77802	-0.00052814	678.825394207137	32.732	0.36199	32.732	32.611	32.973	0	1089	61	0.96624947	0.03662759	0.96624947	390.95303	0	14.819824						507	16	4	NaN	NaN	NaN	0.47586	1	19614	19614		19.336	12.206	1	82031			32017	5810	18515	19015	25515	25515					-0.02382654876214474
YPDAYTTWNIL	11	Unmodified	_YPDAYTTWNIL_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	678.8271603388001	2	678.82716	1355.63977	0.97502	0.00066187	-3.3264	-0.002258	-2.3513	-0.0015962	678.8248609133893	32.73	0.28956	32.727	32.607	32.896	-0.0031052	1086	64	0.9680805	0.038456857	0.9665611	391.6939	0	15.559967						479	13	5	NaN	NaN	NaN	0.046084	1	18725	18725		50.831	32.597	1	73954			32018	5810	18515	19015	25516	25516					-0.02382654876214474
YPDAYTTWNIL	11	Unmodified						0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	678.82716	1355.63977	1.0948	0.0007432	-4.0415	-0.0027435	-2.9467	-0.0020003	678.8249669437596	32.972	0.096497	32.969	32.921	33.018	-0.0024757	1083	34	0.9699114	0.020137608	0.96839195	392.4347		8.147827	0.11887	-0.0020478	0.0010713	NaN	19.336	90	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7463.4			32019	5810	18515	19015							-0.02382654876214474
YPDEDRSTFQ	10	Unmodified	_YPDEDRSTFQ_					0	0	0			REV__ENSG00000183386|ENST00000373016|FHL3	REV__ENSG00000183386|ENST00000373016|FHL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	419.8509249921	3	419.850925	1256.53095	1.5347	0.00064435	1.7834	0.00074876	3.3181	0.0013931	419.85185059661615	28.484	0.19308	28.484	28.388	28.581	0	1491	46	0.7190863	0.027864277	0.7190863	436.76642	0	16.924469						150	9	3	NaN	NaN	NaN	0.76892	1	17923	17923		1.3696	0.26755	1	15296	+		32020	10891	18516	19016	25517	25517					-0.08705865846513916
YPDEDRSTFQ	10	Unmodified						0	0	0			REV__ENSG00000183386|ENST00000373016|FHL3	REV__ENSG00000183386|ENST00000373016|FHL3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	419.850925	1256.53095	1.5347	0.00064435	1.7834	0.00074876	3.3181	0.0013931	419.85185059661615	28.484	0.19308	28.484	28.388	28.581	0	1491	46	0.7190863	0.027864277	0.7190863	436.76642		16.924469	-0.043733	0.00018865	0.00075972	NaN	1.3696	150	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15296	+		32021	10891	18516	19016							-0.08705865846513916
YPDEIEYIF	9	Unmodified	_YPDEIEYIF_					0	0	0		nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.77660482475	2	594.776605	1187.53866	1.0902	0.00064843	-0.075748	-4.5053E-05	1.0145	0.00060338	594.7765749441613	32.394	0.2654	32.394	32.345	32.611	0	1188	97	0.90571284	0.058851242	0.90571284	366.98248	0	23.845734						420	12	3	NaN	NaN	NaN	0.47587	1	16074	16074		10.605	3.0174	1	69524			32022	1884	18517	19017	25518	25518					-0.04761106578939689
YPDEIEYIF	9	Unmodified	_YPDEIEYIF_					0	0	0		nc|ENSG00000112715|P15692-14|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	nc|ENSG00000112715|P15692-14|VEGFA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.77660482475	2	594.776605	1187.53866	0.60577	0.0003603	0.15268	9.0811E-05	0.75845	0.00045111	594.7769422960652	32.393	0.2172	32.389	32.341	32.558	-0.0037613	1188	91	0.90571284	0.05516112	0.9041934	366.98248	0	22.350555						444	10	3	NaN	NaN	NaN	0.39244	1	15463	15463		14.042	1.0388	1	74957			32023	1884	18517	19017	25519	25519					-0.04761106578939689
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1174.4687454943999	1	1174.46875	1173.46147	2.8392	0.0033345	-1.1348	-0.0013328	1.7044	0.0020018	1174.467272950072	26.77	0.60381	26.77	26.553	27.157	0	87	79	1.5670487	0.04594183	1.5670487	317.52026	0	9.308868						1039	26	4	NaN	NaN	NaN	0.0019419	1	15585	15585		86.17	54.494	1	194750			32024	885	18518	19018	25520	25520					-0.1183232479529579
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7380109805	2	587.738011	1173.46147	1.7331	0.0010186	1.2139	0.00071343	2.947	0.001732	588.2402585001522	26.65	0.21729	26.65	26.553	26.77	0	1212	70	0.8910048	0.042292476	0.8910048	361.0727	0	17.138702						322	10	4	NaN	NaN	NaN	0.37681	1	15586	15586		24.562	11.559	1	41968			32025	885	18518	19018	25521	25521					-0.1183232479529579
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7380109805	2	587.738011	1173.46147	1.0478	0.00061584	-0.43145	-0.00025358	0.61637	0.00036227	587.7372789190456	26.697	0.14478	26.687	26.542	26.687	-0.010645	1212	76	0.8910048	0.045970082	0.88948536	361.07272	0	18.629028						218	7	2	NaN	NaN	NaN	0.31689	1	15031	15031		27.046	11.584	1	39273			32026	885	18518	19018	25522	25522					-0.1183232479529579
YPDENGFDAF	10	Unmodified	_YPDENGFDAF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1174.4687454943999	1	1174.46875	1173.46147	2.082	0.0024452	-0.95838	-0.0011256	1.1236	0.0013196	1174.467649302322	26.77	0.5068	26.759	26.542	27.049	-0.010645	84	76	1.5688156	0.044167757	1.5672961	317.8783	0	8.949402						669	22	2	NaN	NaN	NaN	1.0378E-05	1	15032	15032		117.26	77.804	1	175610			32027	885	18518	19018	25523	25523					-0.1183232479529579
YPDFSVVVL	9	Unmodified	_YPDFSVVVL_					0	0	0		nc|ENSG00000149474|Q9H8E8|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8|KAT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1038.5506246303	1	1038.55062	1037.54335	0.92195	0.0009575	-0.81324	-0.00084459	0.10872	0.00011291	1038.5504870588786	33.383	0.26543	33.383	33.311	33.576	0	120	109	1.5476005	0.06371963	1.5476005	314.05728	0	12.930756						335	12	3	NaN	NaN	NaN	0.062072	1	10105	10105		41.785	12.186	1	38664			32028	3677	18519	19019	25524	25524					0.026078223544800494
YPDFTNPTM	9	Unmodified	_YPDFTNPTM_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.4608233449999	1	1085.46082	1084.45355	1.5392	0.0016707	1.7652	0.001916	3.3043	0.0035867	1085.463366536132	24.719	0.096512	24.719	24.695	24.791	0	120	43	1.5476005	0.024769425	1.5476005	313.87897	0	5.0236206						106	5	3	NaN	NaN	NaN	0.059222	1	12146	12146		42.995	18.595	1	6570.6			32029	1039	18520	19020	25525	25525					-0.08530175316400346
YPDFTNPTM	9	Unmodified	_YPDFTNPTM_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.4608233449999	1	1085.46082	1084.45355	1.4604	0.0015852	1.4956	0.0016234	2.956	0.0032086	1085.462658614613	24.719	0.096508	24.707	24.682	24.779	-0.012392	123	55	1.5458313	0.031849623	1.5443119	313.52017	0	6.4596252						90	5	2	NaN	NaN	NaN	0.032689	1	11829	11829		55.592	31.191	1	7038.4			32030	1039	18520	19020	25526	25526					-0.08530175316400346
YPDGIRHI	8	Unmodified	_YPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	485.75888380835005	2	485.758884	969.503215	1.9379	0.00094137	-2.2874	-0.0011111	-0.34947	-0.00016976	485.75782704246626	16.47	0.16784	16.47	16.422	16.59	0	1473	40	0.7302302	0.024135947	0.7302302	296.6422	0	9.804749						185	8	3	NaN	NaN	NaN	0.26796	1	7587	7587		44.638	19.677	1	27148			32031	5582	18521	19021	25527	25527					0.017243204745682306
YPDGIRHI	8	Unmodified	_YPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	485.75888380835005	2	485.758884	969.503215	1.9499	0.00094717	-2.0836	-0.0010121	-0.13368	-6.4938E-05	485.75781696134106	16.539	0.1678	16.526	16.478	16.645	-0.012995	1473	40	0.7302302	0.024135947	0.7287108	296.6422	0	9.804749						199	8	3	NaN	NaN	NaN	0.23186	1	7446	7446		47.482	22.521	1	27368			32032	5582	18521	19021	25528	25528					0.017243204745682306
YPDGNEGAIRF	11	Unmodified	_YPDGNEGAIRF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.79365187245	2	619.793652	1237.57275	1.1039	0.00068417	-2.2809	-0.0014137	-1.1771	-0.00072954	619.7925424359869	21.127	0.28901	21.127	21.031	21.32	0	1191	52	0.90387505	0.03123939	0.90387505	366.06772	0	12.651886						257	13	3	NaN	NaN	NaN	0.19358	1	17461	17461		30.925	15.103	1	31997			32033	5053	18522	19022	25529	25529					-0.03653265367347558
YPDGNEGAIRF	11	Unmodified	_YPDGNEGAIRF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.79365187245	2	619.793652	1237.57275	0.63143	0.00039135	-1.0229	-0.00063399	-0.39148	-0.00024264	619.7938135350682	21.128	0.072231	21.114	21.041	21.114	-0.014004	1191	67	0.90387505	0.040412188	0.9023556	366.06772	0	16.366852						156	4	3	NaN	NaN	NaN	0.46001	1	16731	16731		19.904	12.316	1	17909			32034	5053	18522	19022	25530	25530					-0.03653265367347558
YPDGNEGAIRF	11	Unmodified	_YPDGNEGAIRF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.79365187245	2	619.793652	1237.57275	0.76172	0.00047211	-0.64942	-0.00040251	0.1123	6.9602E-05	619.7929978435867	21.176	0.21657	21.162	21.162	21.378	-0.014004	1191	58	0.90387505	0.034914613	0.9023556	366.06772	0	14.14035						234	10	3	NaN	NaN	NaN	0.46001	1	16732	16732		19.904	12.316	1	25335			32035	5053	18522	19022	25531	25531					-0.03653265367347558
YPDINFNRL	9	Unmodified	_YPDINFNRL_					0	0	0		nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG	nc|ENSG00000227345|Q86W56-5|PARG	nc|ENSG00000227345|Q86W56-5|PARG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.2958304206501	2	576.29583	1150.57711	1.8078	0.0010418	-3.134	-0.0018061	-1.3262	-0.00076427	576.2941832936154	24.695	0.28953	24.695	24.574	24.864	0	1194	100	0.902037	0.060673952	0.902037	365.6279	0	24.593353						624	13	4	NaN	NaN	NaN	0.024221	1	14831	14831		66.656	11.065	1	207320			32036	6029	18523	19023	25532	25532					0.007842438462375867
YPDINFNRL	9	Unmodified	_YPDINFNRL_					0	0	0		nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG;nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG	nc|ENSG00000227345|Q86W56-5|PARG	nc|ENSG00000227345|Q86W56-5|PARG	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.2958304206501	2	576.29583	1150.57711	1.4392	0.00082939	-2.2045	-0.0012704	-0.76533	-0.00044106	576.2952891083557	24.695	0.26536	24.682	24.562	24.827	-0.012392	1191	97	0.90387505	0.05883217	0.9023556	366.37292	0	23.846832						641	12	4	NaN	NaN	NaN	0.064504	1	14326	14326		40.957	4.7221	1	187550			32037	6029	18523	19023	25533	25533					0.007842438462375867
YPDIPKEEAF	10	Unmodified	_YPDIPKEEAF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.79532889415	2	604.795329	1207.5761	1.5476	0.00093599	-2.6018	-0.0015736	-1.0542	-0.0006376	604.7931797302693	22.212	0.3136	22.212	22.091	22.405	0	1164	73	0.9204082	0.04408127	0.9204082	372.86575	0	17.857727						323	14	3	NaN	NaN	NaN	0.089401	1	16670	16670		47.424	20.128	1	49778			32038	4630	18524	19024	25534	25534					-0.01938015313339747
YPDIPKEEAF	10	Unmodified	_YPDIPKEEAF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.79532889415	2	604.795329	1207.5761	0.72436	0.00043809	-0.86059	-0.00052048	-0.13623	-8.2393E-05	605.2962986678122	22.187	0.14472	22.173	22.101	22.246	-0.013731	1164	58	0.9204082	0.034884453	0.91888875	372.86575	0	14.132019						210	7	3	NaN	NaN	NaN	0.060038	1	16000	16000		51.467	31.018	1	27666			32039	4630	18524	19024	25535	25535					-0.01938015313339747
YPDLENPPL	9	Unmodified	_YPDLENPPL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1057.5200527834	1	1057.52005	1056.51278	2.437	0.0025772	-1.5049	-0.0015915	0.93208	0.0009857	1057.5186244884615	26.312	0.1448	26.312	26.239	26.384	0	168	43	1.5192716	0.024806142	1.5192716	308.2358	0	5.032776						97	7	2	NaN	NaN	NaN	0.61413	1	10936	10936		4.9097	0.49665	1	5943.6			32040	1925	18525	19025	25536	25536					-0.013219560305742561
YPDLENPPL	9	Unmodified						0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1057.52005	1056.51278	2.0634	0.0021821	-0.68916	-0.0007288	1.3742	0.0014533	1057.5190733874101	26.287	0.16887	26.276	26.228	26.397	-0.011137	159	46	1.5245869	0.026573777	1.5230675	309.3142		5.391388	-0.017757	0.00046794	0.0018979	NaN	4.9097	121	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7838.2			32041	1925	18525	19025							-0.013219560305742561
YPDLSELLM	9	Unmodified	_YPDLSELLM_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5281746286998	1	1080.52817	1079.5209	1.3247	0.0014313	1.5657	0.0016918	2.8904	0.0031231	1080.529931488297	34.469	0.1448	34.469	34.396	34.541	0	63	64	1.5811787	0.03708923	1.5811787	320.7076	0	7.5227356						152	7	2	NaN	NaN	NaN	0.14301	1	11954	11954		29.598	4.6373	1	15183			32042	1922	18526	19026	25537	25537					-0.01568145105466101
YPDLSELLM	9	Unmodified	_YPDLSELLM_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5281746286998	1	1080.52817	1079.5209	1.6435	0.0017759	1.1815	0.0012767	2.825	0.0030525	1080.5300382966934	34.468	0.1206	34.467	34.419	34.539	-0.0006485	60	64	1.582944	0.03708923	1.5814246	321.06567	0	7.5227356						129	6	2	NaN	NaN	NaN	0.10956	1	11650	11650		34.439	9.4778	1	10746			32043	1922	18526	19026	25538	25538					-0.01568145105466101
YPDLSELLM	9	Oxidation (M)	_YPDLSELLM(Oxidation (M))_		YPDLSELLM(1)		YPDLSELLM(71)	0	0	1		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1096.5230892507998	1	1096.52309	1095.51581	1.2126	0.0013297	-0.51349	-0.00056305	0.69915	0.00076663	1096.5249300406874	31.597	0.096575	31.597	31.525	31.621	0	75	94	1.5741152	0.054779768	1.5741152	319.2161	0	11.108826						247	5	4	NaN	NaN	NaN	0.021105	1	12640	12640		70.6	31.682	1	33696			32044	1922	18526	19027	25539	25539		215			-0.02812448968074932
YPDLSELLM	9	Oxidation (M)	_YPDLSELLM(Oxidation (M))_		YPDLSELLM(1)		YPDLSELLM(91)	0	0	1		ENSG00000113569|ENST00000231498|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1096.5230892507998	1	1096.52309	1095.51581	0.97688	0.0010712	0.19717	0.00021621	1.1741	0.0012874	1096.524878221231	31.572	0.072411	31.568	31.544	31.616	-0.0044155	72	100	1.5758814	0.058320045	1.5743619	319.57425	0	11.826752						221	4	3	NaN	NaN	NaN	0.01047	1	12317	12317		91.429	56.132	1	28845			32045	1922	18526	19027	25540	25540		215			-0.02812448968074932
YPDPAIAQF	9	Unmodified	_YPDPAIAQF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1021.4989234108001	1	1021.49892	1020.49165	1.688	0.0017243	-2.6202	-0.0026765	-0.93217	-0.00095221	1021.4984126027786	26.456	0.19303	26.445	26.397	26.59	-0.011137	213	139	1.4926696	0.081679225	1.4911501	302.97647	0	16.578918						290	9	2	NaN	NaN	NaN	0.33629	1	9187	9187		16.584	2.8471	1	23821			32046	4739	18527	19028	25541	25541					-0.01777921339430577
YPDPAIAQF	9	Unmodified	_YPDPAIAQF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.2530999387	2	511.2531	1020.49165	1.2422	0.00063507	-0.39721	-0.00020308	0.84497	0.00043199	511.253840829327	26.456	0.096521	26.445	26.397	26.493	-0.011137	1311	61	0.83019954	0.036905527	0.8286801	337.01712	0	14.981689						129	5	2	NaN	NaN	NaN	0.18779	1	9188	9188		26.115	6.7785	1	12186			32047	4739	18527	19028	25542	25542					-0.01777921339430577
YPDPEVVWF	9	Unmodified	_YPDPEVVWF_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-10|MYLK;nc|ENSG00000065534|Q15746-8|MYLK;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1151.5407882255	1	1151.54079	1150.53351	1.9851	0.0022859	0.091643	0.00010553	2.0767	0.0023914	1151.540093827394	33.697	0.24122	33.697	33.576	33.817	0	60	106	1.582944	0.061848044	1.582944	320.81543	0	12.5347595						363	11	2	NaN	NaN	NaN	0.074859	1	14825	14825		39.459	10.563	1	31401			32048	688	18528	19029	25543	25543					-0.03573365650913729
YPDPEVVWF	9	Unmodified	_YPDPEVVWF_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-10|MYLK;nc|ENSG00000065534|Q15746-8|MYLK;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1151.5407882255	1	1151.54079	1150.53351	1.4467	0.001666	1.6182	0.0018635	3.065	0.0035294	1152.5455658739143	33.671	0.14475	33.67	33.621	33.766	-0.0018463	60	109	1.582944	0.06361854	1.5814246	320.8154	0	12.893555						276	7	3	NaN	NaN	NaN	0.33629	1	14317	14317		16.584	8.3393	1	17380			32049	688	18528	19029	25544	25544					-0.03573365650913729
YPDPNYLQNVL	11	Unmodified	_YPDPNYLQNVL_					0	0	0		ENST00000465488.1_1_7:76132718-76134915:+|nuORF;ENST00000468546.5_1_7:76131596-76134915:+|nuORF;ENST00000479915.5_1_7:76129456-76134915:+|nuORF;nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	ENST00000465488.1_1_7:76132718-76134915:+|nuORF	ENST00000465488.1_1_7:76132718-76134915:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.33260985745	2	668.33261	1334.65067	1.8881	0.0012619	-2.6043	-0.0017405	-0.71611	-0.0004786	668.3310069827454	29.787	0.28959	29.787	29.667	29.956	0	1098	88	0.960755	0.053147197	0.960755	388.79163	0	21.507263						661	13	4	NaN	NaN	NaN	0.40559	1	19327	19327		21.85	2.514	1	132920			32050	1070	18529	19030	25545	25545					-0.003272525019610839
YPDPNYLQNVL	11	Unmodified	_YPDPNYLQNVL_					0	0	0		ENST00000465488.1_1_7:76132718-76134915:+|nuORF;ENST00000468546.5_1_7:76131596-76134915:+|nuORF;ENST00000479915.5_1_7:76129456-76134915:+|nuORF;nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	ENST00000465488.1_1_7:76132718-76134915:+|nuORF	ENST00000465488.1_1_7:76132718-76134915:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.33260985745	2	668.33261	1334.65067	1.4292	0.00095518	-2.9153	-0.0019484	-1.4861	-0.00099323	668.331008827729	29.786	0.36189	29.779	29.659	30.021	-0.0070648	1095	94	0.9625867	0.056800306	0.96106726	389.53287	0	22.985535						784	16	4	NaN	NaN	NaN	0.19064	1	18464	18464		31.198	14.34	1	151550			32051	1070	18529	19030	25546	25546					-0.003272525019610839
YPDPVIQEL	9	Unmodified	_YPDPVIQEL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.5513529118	1	1073.55135	1072.54408	1.5183	0.0016299	-2.3215	-0.0024922	-0.80319	-0.00086227	1073.548690852744	27.543	0.1207	27.543	27.471	27.591	0	123	49	1.5458313	0.028307796	1.5458313	313.56393	0	5.742096						113	6	2	NaN	NaN	NaN	0.077759	1	11666	11666		39.039	7.3637	1	9588.3			32052	1411	18530	19031	25547	25547					0.010706170035291507
YPDPYGGEKL	10	Unmodified	_YPDPYGGEKL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.7743964868001	2	569.774396	1137.53424	2.2338	0.0012728	-1.5757	-0.00089781	0.65806	0.00037495	569.7736356975731	19.468	0.35996	19.468	19.324	19.684	0	1239	88	0.87444305	0.053359926	0.87444305	354.4912	0	21.631622						723	16	3	NaN	NaN	NaN	0.0011471	1	14366	14366		88.822	27.84	1	305190			32053	6143	18531	19032	25548	25548					-0.029025710018458994
YPDPYGGEKL	10	Unmodified	_YPDPYGGEKL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.7743964868001	2	569.774396	1137.53424	1.7363	0.00098927	-2.1385	-0.0012185	-0.40227	-0.0002292	569.7733121564249	19.466	0.28865	19.452	19.332	19.621	-0.014141	1242	91	0.87260187	0.0552029	0.8710824	353.7448	0	22.378754						820	13	5	NaN	NaN	NaN	0.0002722	1	13894	13894		98.792	42.834	1	307590			32054	6143	18531	19032	25549	25549					-0.029025710018458994
YPDPYGGEKL	10	Unmodified						0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	569.774396	1137.53424	2.0369	0.0011606	-6.0877	-0.0034686	-4.0508	-0.002308	569.7705957793625	19.803	0.096277	19.789	19.741	19.837	-0.014141	1242	28	0.87260187	0.016570747	0.8710824	353.7448		6.717621	0.16054	-0.0049848	-0.0016803	NaN	88.822	53	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3112.1			32055	6143	18531	19032							-0.029025710018458994
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.7852955241001	2	584.785296	1167.55604	2.6335	0.00154	-1.8705	-0.0010939	0.76298	0.00044618	584.7838603862858	19.636	0.36016	19.636	19.516	19.876	0	1230	121	0.8799654	0.073556185	0.8799654	356.62006	0	29.809814						1240	16	4	NaN	NaN	NaN	0.0072459	1	15391	15391		74.794	26.792	1	668940			32056	6143	18532	19033	25550	25550					-0.021037662532762624
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7852955241001	2	584.785296	1167.55604	2.1925	0.0012821	-1.0983	-0.00064226	1.0942	0.00063988	584.7845236528311	19.635	0.40907	19.621	19.5	19.909	-0.014141	1233	121	0.87812483	0.07356417	0.8766054	355.8741	0	29.813019						1232	18	4	NaN	NaN	NaN	0.011513	1	14860	14860		69.32	16.54	1	613740			32057	6143	18532	19033	25551	25551					-0.021037662532762624
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.776416247	2	578.776416	1155.53828	2.5629	0.0014833	-1.544	-0.00089362	1.0189	0.0005897	578.775045967439	22.405	0.40979	22.405	22.212	22.621	0	1221	121	0.885486	0.07358003	0.885486	358.90094	0	29.82312						1259	18	6	NaN	NaN	NaN	1.2827E-11	1	15002	15002		141.69	83.493	1	1457700			32058	5542;3078;6137	18533	19034	25552	25552					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.776416247	2	578.776416	1155.53828	2.1162	0.0012248	-0.93716	-0.00054241	1.179	0.00068239	578.775877793513	23.007	0.024054	23.007	22.983	23.007	0	1218	37	0.8873258	0.022076428	0.8873258	359.6466	0	8.947876						47	2	2	NaN	NaN	NaN	0.59509	1	15003	15003		5.6942	0	1	5713.1			32059	5542;3078;6137	18533	19034	25553	25553					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.776416247	2	578.776416	1155.53828	2.2327	0.0012922	-1.874	-0.0010846	0.35873	0.00020763	578.7751268499385	22.428	0.28901	22.414	22.27	22.559	-0.013731	1224	112	0.883646	0.068057835	0.88212657	358.15515	0	27.58487						1277	13	8	NaN	NaN	NaN	1.2827E-11	1	14501	14501		141.69	83.493	1	1526800			32060	5542;3078;6137	18533	19034	25554	25554					-0.033268047797946565
YPDRIMNTF	9	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.776416	1155.53828	1.3917	0.00080548	-2.4805	-0.0014357	-1.0888	-0.0006302	578.7748768495143	22.259	0.072395	22.246	22.197	22.27	-0.013731	1224	52	0.883646	0.031290054	0.88212657	358.15515		12.682343	-0.079426	-0.0010208	-0.0016797	NaN	141.69	81	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6714.3			32061	5542;3078;6137	18533	19034							-0.033268047797946565
YPDRIMNTF	9	Unmodified						0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.776416	1155.53828	1.5444	0.00089385	-0.80944	-0.00046848	0.73494	0.00042536	578.7755765952348	22.958	0.096474	22.945	22.896	22.993	-0.01354	1221	73	0.885486	0.044152796	0.88396657	358.9009		17.895782	-0.031209	6.1297E-05	-0.0016796	NaN	5.6942	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12370			32062	5542;3078;6137	18533	19034							-0.033268047797946565
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(100)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.77387355805	2	586.773874	1171.53319	2.5618	0.0015032	-1.7741	-0.001041	0.78772	0.00046221	586.7728857794821	19.276	0.35994	19.276	19.18	19.54	0	1236	100	0.876284	0.06071335	0.876284	355.11404	0	24.604065						1645	16	6	NaN	NaN	NaN	0.0050453	1	15532	15532		102.5	26.797	1	1670300			32063	5542;3078;6137	18533	19035	25555	25555		348			-0.04571108642426225
YPDRIMNTF	9	Oxidation (M)	_YPDRIM(Oxidation (M))NTF_		YPDRIM(1)NTF		YPDRIM(100)NTF	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.77387355805	2	586.773874	1171.53319	2.4524	0.001439	-2.0795	-0.0012202	0.37297	0.00021885	586.7727248167187	19.298	0.45685	19.284	19.14	19.597	-0.014141	1236	103	0.876284	0.062556505	0.8747646	355.11404	0	25.351013						1782	20	6	NaN	NaN	NaN	0.0040343	1	14986	14986		104.89	49.298	1	1655900			32064	5542;3078;6137	18533	19035	25556	25556		348			-0.04571108642426225
YPDSDAVL	8	Unmodified	_YPDSDAVL_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	879.4094397015	1	879.40944	878.402163	1.7642	0.0015514	-0.013211	-1.1618E-05	1.751	0.0015398	879.409209216873	22.187	0.16887	22.187	22.091	22.26	0	402	52	1.3804773	0.030377269	1.3804773	280.80765	0	6.1791687						126	8	2	NaN	NaN	NaN	0.54545	1	5777	5777		28.667	4.8161	1	9981.2			32065	2052	18534	19036	25557	25557					-0.04190176018812508
YPDSDAVL	8	Unmodified	_YPDSDAVL_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4094397015	1	879.40944	878.402163	1.2311	0.0010826	-0.58654	-0.00051581	0.64455	0.00056682	879.4091536002592	22.187	0.14472	22.173	22.077	22.222	-0.013731	408	55	1.3769034	0.03215897	1.375384	280.08066	0	6.5415955						125	7	2	NaN	NaN	NaN	0.62311	1	5652	5652		23.85	10.113	1	8491.8			32066	2052	18534	19036	25558	25558					-0.04190176018812508
YPDSDAVL	8	Unmodified	_YPDSDAVL_					0	0	0		ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	879.4094397015	1	879.40944	878.402163	1.4049	0.0012355	2.2706	0.0019968	3.6754	0.0032322	879.411700585985	22.284	0.096371	22.27	22.246	22.342	-0.013731	405	40	1.3786905	0.023229599	1.377171	280.44418	0	4.7252197						86	5	2	NaN	NaN	NaN	0.45125	1	5653	5653		33.698	15.918	1	6021.9			32067	2052	18534	19036	25559	25559					-0.04190176018812508
YPDSHLPTL	9	Unmodified	_YPDSHLPTL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	521.7638318005	2	521.763832	1041.51311	1.9416	0.001013	0.056621	2.9543E-05	1.9982	0.0010426	521.7635871370063	22.163	0.2895	22.163	22.091	22.38	0	1275	91	0.85233563	0.05533433	0.85233563	345.91025	0	22.456787						799	13	4	NaN	NaN	NaN	0.25448	1	10270	10270		21.835	11.23	1	172790			32068	2264	18535	19037	25560	25560					-0.00598536310712916
YPDSHLPTL	9	Unmodified						0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	521.763832	1041.51311	1.4696	0.00076678	0.065079	3.3956E-05	1.5347	0.00080073	521.7636795741327	22.163	0.28923	22.149	22.101	22.39	-0.013731	1275	88	0.85233563	0.053492785	0.8508162	345.91025		21.709412	-0.0070835	4.7335E-06	-0.00075972	NaN	21.835	770	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175830			32069	2264	18535	19037							-0.00598536310712916
YPDTDVFL	8	Unmodified	_YPDTDVFL_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4563898941002	1	969.45639	968.449113	2.2526	0.0021838	-0.49011	-0.00047514	1.7625	0.0017086	969.455642159998	28.75	0.65161	28.75	28.484	29.136	0	255	136	1.4678029	0.080069184	1.4678029	298.1425	0	16.263763						1342	28	4	NaN	NaN	NaN	0.09307	1	7556	7556		65.672	37.006	1	487210			32070	1464	18536	19038	25561	25561					-0.03637316467643359
YPDTDVFL	8	Unmodified	_YPDTDVFL_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.4563898941002	1	969.45639	968.449113	1.6865	0.001635	-0.63006	-0.00061082	1.0565	0.0010242	969.4558225883329	28.749	0.4826	28.74	28.572	29.054	-0.0083504	252	133	1.4695803	0.078285694	1.4680609	298.5035	0	15.90152						1485	21	5	NaN	NaN	NaN	0.078841	1	7410	7410		69.745	38.953	1	512300			32071	1464	18536	19038	25562	25562					-0.03637316467643359
YPDTDVFLA	9	Unmodified	_YPDTDVFLA_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1040.4935036819002	1	1040.4935	1039.48623	1.7548	0.0018259	-8.1397	-0.0084693	-6.3849	-0.0066434	1040.4845056885574	28.05	0.12063	28.05	27.977	28.098	0	198	91	1.5015416	0.053235054	1.5015416	304.70303	0	10.802826						198	6	2	NaN	NaN	NaN	0.14301	1	10176	10176		29.598	14.136	1	29489			32072	1464	18537	19039	25563	25563					-0.031936449218846974
YPDTDVFLA	9	Unmodified	_YPDTDVFLA_					0	0	0		ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	ENSG00000104140|ENST00000220507|RHOV	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1040.4935036819002	1	1040.4935	1039.48623	1.0587	0.0011015	-3.3714	-0.0035079	-2.3127	-0.0024064	1040.4892326511122	28.049	0.24138	28.04	27.992	28.233	-0.0089779	195	106	1.5033154	0.062091112	1.501796	305.063	0	12.599945						264	11	2	NaN	NaN	NaN	0.062072	1	9966	9966		49.833	24.872	1	34871			32073	1464	18537	19039	25564	25564					-0.031936449218846974
YPDTDVIL	8	Unmodified	_YPDTDVIL_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	935.4720399583001	1	935.47204	934.464763	1.6712	0.0015634	1.566	0.001465	3.2373	0.0030284	935.4735961562085	26.843	0.3866	26.843	26.722	27.109	0	306	109	1.4375578	0.06414044	1.4375578	292.14795	0	13.034943						945	17	4	NaN	NaN	NaN	0.12449	1	6711	6711		59.445	17.661	1	182780			32074	720	18538	19040	25565	25565					-0.005090299506036899
YPDTDVIL	8	Unmodified	_YPDTDVIL_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	935.4720399583001	1	935.47204	934.464763	1.7267	0.0016153	0.39479	0.00036931	2.1215	0.0019846	935.4724951778425	26.866	0.4103	26.856	26.711	27.121	-0.010645	303	97	1.4393384	0.05700767	1.437819	292.50983	0	11.585388						943	18	4	NaN	NaN	NaN	0.12449	1	6573	6573		59.445	9.6123	1	177470			32075	720	18538	19040	25566	25566					-0.005090299506036899
YPDTDVILM	9	Unmodified	_YPDTDVILM_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1066.5125245645	1	1066.51252	1065.50525	2.1793	0.0023243	-0.55564	-0.0005926	1.6237	0.0017317	1066.512463201507	29.305	0.38614	29.305	29.16	29.546	0	147	163	1.5316714	0.09566069	1.5316714	310.7177	0	19.405914						1614	17	5	NaN	NaN	NaN	0.011118	1	11361	11361		89.521	55.823	1	635560			32076	720	18539	19041	25567	25567					-0.02488431622509779
YPDTDVILM	9	Unmodified	_YPDTDVILM_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1066.5125245645	1	1066.51252	1065.50525	1.6554	0.0017655	-0.91215	-0.00097282	0.74321	0.00079265	1066.5123586604836	29.304	0.50673	29.296	29.127	29.634	-0.0077229	147	169	1.5316714	0.09922469	1.530152	310.7177	0	20.128937						1633	22	4	NaN	NaN	NaN	0.014943	1	11098	11098		78.398	39.48	1	631670			32077	720	18539	19041	25568	25568					-0.02488431622509779
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(120)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5074391865999	1	1082.50744	1081.50016	2.0453	0.002214	-1.0484	-0.0011348	0.99695	0.0010792	1082.5071621362993	24.96	0.4585	24.96	24.816	25.274	0	135	133	1.5387528	0.07792091	1.5387528	312.09525	0	15.804199						1520	20	5	NaN	NaN	NaN	0.00010594	1	12045	12045		122.55	78.247	1	661600			32078	720	18539	19042	25569	25569		75			-0.0373273548511861
YPDTDVILM	9	Oxidation (M)	_YPDTDVILM(Oxidation (M))_		YPDTDVILM(1)		YPDTDVILM(120)	0	0	1		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5074391865999	1	1082.50744	1081.50016	2.3186	0.0025099	-1.2613	-0.0013654	1.0572	0.0011445	1082.5068455917908	24.96	0.41016	24.948	24.803	25.213	-0.012394	132	148	1.5405227	0.08678937	1.5390033	312.45422	0	17.602936						1493	18	5	NaN	NaN	NaN	0.00050979	1	11726	11726		115.51	74.049	1	622400			32079	720	18539	19042	25570	25570		75			-0.0373273548511861
YPDTEEIYKL	10	Unmodified	_YPDTEEIYKL_					0	0	0		ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENST00000483991.5_1_9:138703157-138717996:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	635.81371861255	2	635.813719	1269.61288	2.0567	0.0013077	-2.04	-0.0012971	0.016652	1.0587E-05	636.3151419873521	23.441	0.19303	23.427	23.379	23.572	-0.013294	1146	91	0.93142134	0.055018425	0.9299019	377.1189	0	22.276154						275	9	3	NaN	NaN	NaN	0.66626	1	17408	17408		10.36	0	1	32589			32080	2650	18540	19043	25571	25571					-0.011137634874330615
YPDTPSYPDT	10	Unmodified	_YPDTPSYPDT_					0	0	0		ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.2456688371001	2	578.245669	1154.47678	2.1489	0.0012426	-5.1451	-0.0029751	-2.9962	-0.0017325	578.741112521121	18.029	0.14394	18.029	17.909	18.053	0	1203	61	0.8965218	0.036782026	0.8965218	363.37787	0	14.908478						157	7	2	NaN	NaN	NaN	0.5917	1	14946	14946		15.463	5.7167	1	12256			32081	4824	18541	19044	25572	25572					-0.09427457998071986
YPDVAVGSL	9	Unmodified	_YPDVAVGSL_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.4723743093001	1	920.472374	919.465098	2.1507	0.0019797	-1.4317	-0.0013178	0.71905	0.00066187	920.4714286396833	25.346	0.24129	25.346	25.25	25.491	0	345	118	1.4143922	0.06954825	1.4143922	287.50824	0	14.137329						611	11	4	NaN	NaN	NaN	0.0040938	1	6403	6403		104.71	40.753	1	125210			32082	140	18542	19045	25573	25573					0.002143897692462815
YPDVAVGSL	9	Unmodified	_YPDVAVGSL_					0	0	0		nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	nc|ENSG00000091409|P23229-5|ITGA6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4723743093001	1	920.472374	919.465098	1.8901	0.0017398	-1.3737	-0.0012645	0.51637	0.0004753	920.4720022007422	25.346	0.26534	25.334	25.238	25.503	-0.012011	342	115	1.4161754	0.06776142	1.4146559	287.8707	0	13.774109						631	12	4	NaN	NaN	NaN	0.023828	1	6271	6271		67.154	25.37	1	126830			32083	140	18542	19045	25574	25574					0.002143897692462815
YPDVLKFPDEL	11	Unmodified	_YPDVLKFPDEL_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.3451859164501	2	668.345186	1334.67582	1.3126	0.0008773	-1.1981	-0.00080075	0.11453	7.6544E-05	668.8452777223796	29.329	0.1689	29.329	29.232	29.401	0	1089	49	0.96624947	0.029302001	0.96624947	391.015	0	11.857758						230	8	4	NaN	NaN	NaN	0.045077	1	19330	19330		51.086	30.399	1	17947			32084	2714	18543	19046	25575	25575					0.02186802300616364
YPDVLKFPDEL	11	Unmodified	_YPDVLKFPDEL_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.3451859164501	2	668.345186	1334.67582	1.1968	0.00079985	-1.5127	-0.001011	-0.31592	-0.00021114	668.8457738277938	29.304	0.24129	29.296	29.2	29.441	-0.0077229	1089	61	0.96624947	0.036619663	0.96473	391.015	0	14.819						281	11	3	NaN	NaN	NaN	0.13665	1	18465	18465		36.22	14.385	1	30375			32085	2714	18543	19046	25576	25576					0.02186802300616364
YPDVLTRPSL	10	Unmodified	_YPDVLTRPSL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.8191383414501	2	580.819138	1159.62372	2.2067	0.0012817	-2.5517	-0.0014821	-0.34505	-0.00020041	580.8180768230033	23.272	0.21699	23.272	23.176	23.393	0	1230	55	0.8799654	0.03311813	0.8799654	356.64853	0	13.4227295						262	10	3	NaN	NaN	NaN	0.41022	1	15139	15139		23.177	11.438	1	36947			32086	2440	18544	19047	25577	25577					0.05029683677526009
YPDVLTRPSL	10	Unmodified	_YPDVLTRPSL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.8191383414501	2	580.819138	1159.62372	1.8525	0.001076	-0.90096	-0.00052329	0.95154	0.00055267	580.81835134576	23.32	0.21713	23.307	23.186	23.403	-0.013296	1227	55	0.88180584	0.033121705	0.8802864	357.39444	0	13.424164						250	10	3	NaN	NaN	NaN	0.70538	1	14631	14631		7.6826	2.4937	1	36883			32087	2440	18544	19047	25578	25578					0.05029683677526009
YPDVQAVL	8	Unmodified	_YPDVQAVL_					0	0	0		nc|ENSG00000007341|Q8TDW4-8|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L	nc|ENSG00000007341|Q8TDW4-8|ST7L	nc|ENSG00000007341|Q8TDW4-8|ST7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	904.4774596872002	1	904.47746	903.470183	2.1134	0.0019116	-0.46907	-0.00042426	1.6444	0.0014873	904.4769447320151	26.384	0.096527	26.384	26.336	26.432	0	351	52	1.4108255	0.030319095	1.4108255	286.8581	0	6.164673						100	5	2	NaN	NaN	NaN	0.47456	1	6147	6147		32.453	10.618	1	9195.2			32088	358	18545	19048	25579	25579					0.014586936318664812
YPDVQAVL	8	Unmodified	_YPDVQAVL_					0	0	0		nc|ENSG00000007341|Q8TDW4-8|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L	nc|ENSG00000007341|Q8TDW4-8|ST7L	nc|ENSG00000007341|Q8TDW4-8|ST7L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	904.4774596872002	1	904.47746	903.470183	2.1477	0.0019425	0.7794	0.00070495	2.9271	0.0026475	904.4785749859657	26.384	0.096533	26.373	26.349	26.445	-0.011137	351	58	1.4108255	0.0338825	1.409306	286.8581	0	6.889221						109	5	3	NaN	NaN	NaN	0.55996	1	6022	6022		27.789	2.8278	1	8582			32089	358	18545	19048	25580	25580					0.014586936318664812
YPDYYKIIL	9	Unmodified	_YPDYYKIIL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.3209825386501	2	594.320983	1186.62741	1.4089	0.00083734	-2.0048	-0.0011915	-0.59594	-0.00035418	594.3196831594387	27.881	0.12065	27.881	27.784	27.905	0	1155	85	0.92591566	0.05141151	0.92591566	375.1717	0	20.83142						174	6	2	NaN	NaN	NaN	0.13999	1	16061	16061		30.035	12.066	1	45980			32090	4274	18546	19049	25581	25581					0.04156353451389805
YPDYYKIIL	9	Unmodified						0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	594.320983	1186.62741	0.79761	0.00047403	-3.9352	-0.0023388	-3.1376	-0.0018647	595.3207592129962	27.904	0.16896	27.895	27.798	27.967	-0.009552	1161	88	0.9222442	0.05324477	0.92072475	373.68408		21.57425	0.0069194	-0.001193	-0.0025954	NaN	30.035	501	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75503			32091	4274	18546	19049							0.04156353451389805
YPEDFAIDL	9	Unmodified	_YPEDFAIDL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1082.5040683682	1	1082.50407	1081.49679	1.2998	0.001407	0.73084	0.00079114	2.0306	0.0021982	1082.5050254641512	30.728	0.41023	30.728	30.56	30.97	0	117	118	1.5493695	0.06896031	1.5493695	314.24854	0	13.986786						857	18	4	NaN	NaN	NaN	0.030669	1	12044	12044		58.235	33.274	1	200050			32092	1024	18547	19050	25582	25582					-0.04069662267465901
YPEDFAIDL	9	Unmodified	_YPEDFAIDL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1082.5040683682	1	1082.50407	1081.49679	1.6307	0.0017653	0.379	0.00041027	2.0097	0.0021755	1082.504418948647	30.727	0.33783	30.722	30.577	30.915	-0.0057545	117	121	1.5493695	0.070724726	1.54785	314.24857	0	14.3446045						953	15	5	NaN	NaN	NaN	0.0040938	1	11723	11723		104.71	49.217	1	194580			32093	1024	18547	19050	25583	25583					-0.04069662267465901
YPEDFAIDL	9	Unmodified	_YPEDFAIDL_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7556724174001	2	541.755672	1081.49679	1.1035	0.0005978	1.0241	0.00055479	2.1275	0.0011526	541.7560719233298	30.727	0.26542	30.722	30.601	30.866	-0.0057545	1215	82	0.8891654	0.049701393	0.88764596	360.68307	0	20.16101						432	12	3	NaN	NaN	NaN	0.16171	1	11724	11724		27.789	12.613	1	43055			32094	1024	18547	19050	25584	25584					-0.04069662267465901
YPEDFAIDL	9	Unmodified						0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	541.755672	1081.49679	1.1094	0.00060103	0.20809	0.00011274	1.3175	0.00071377	541.7558735602018	30.704	0.2172	30.704	30.632	30.849	0	1218	70	0.8873258	0.042338252	0.8873258	359.93686		17.174164	-0.0086603	-0.00039714	-0.00016008	NaN	27.789	253	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27752			32095	1024	18547	19050							-0.04069662267465901
YPEDVAEEL	9	Unmodified	_YPEDVAEEL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.4782475482	1	1064.47825	1063.47097	1.8436	0.0019625	-0.050156	-5.339E-05	1.7934	0.0019091	1064.4787249502147	24.019	0.19303	24.019	23.971	24.164	0	195	82	1.5033154	0.04788363	1.5033154	304.97284	0	9.713989						369	9	3	NaN	NaN	NaN	0.036546	1	11266	11266		52.624	2.7912	1	51964			32096	1100	18548	19051	25585	25585					-0.05822556509747301
YPEDVAEEL	9	Unmodified	_YPEDVAEEL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1064.4782475482	1	1064.47825	1063.47097	1.4639	0.0015583	0.30551	0.00032521	1.7694	0.0018835	1064.478618929643	24.019	0.193	24.006	23.958	24.151	-0.012747	195	73	1.5033154	0.042565465	1.501796	304.97284	0	8.635101						323	9	3	NaN	NaN	NaN	0.023074	1	11006	11006		68.108	36.547	1	46067			32097	1100	18548	19051	25586	25586					-0.05822556509747301
YPEDVSEEL	9	Unmodified	_YPEDVSEEL_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.4731621703	1	1080.47316	1079.46589	1.539	0.0016628	1.9783	0.0021375	3.5173	0.0038003	1080.4756062893798	22.549	0.2652	22.549	22.453	22.718	0	189	58	1.5068626	0.03369224	1.5068626	305.6344	0	6.83374						297	12	2	NaN	NaN	NaN	0.055351	1	11937	11937		44.638	16.85	1	34953			32098	3581	18549	19052	25587	25587					-0.07066860372378869
YPEDVSEEL	9	Unmodified	_YPEDVSEEL_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.4731621703	1	1080.47316	1079.46589	1.674	0.0018087	0.76046	0.00082165	2.4345	0.0026304	1080.473758164093	22.548	0.21709	22.535	22.462	22.68	-0.01354	186	61	1.5086359	0.03546369	1.5071164	305.99408	0	7.1930237						243	10	3	NaN	NaN	NaN	0.055351	1	11635	11635		44.638	2.854	1	29572			32099	3581	18549	19052	25588	25588					-0.07066860372378869
YPEEFEKLL	9	Unmodified	_YPEEFEKLL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.30024709655	2	584.300247	1166.58594	2.6306	0.0015371	-0.1074	-6.2754E-05	2.5232	0.0014743	584.3003070437268	26.07	0.28961	26.07	25.95	26.239	0	1194	79	0.902037	0.047790825	0.902037	365.56845	0	19.368195						507	13	4	NaN	NaN	NaN	0.017791	1	15364	15364		74.794	11.064	1	153520			32100	4588	18550	19053	25589	25589					0.009311726920486763
YPEEFEKLL	9	Unmodified	_YPEEFEKLL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.30024709655	2	584.300247	1166.58594	2.3171	0.0013539	-0.34505	-0.00020161	1.9721	0.0011523	584.3010409516836	26.094	0.28961	26.083	25.987	26.276	-0.011137	1194	88	0.902037	0.05331379	0.9005176	365.56845	0	21.606476						565	13	4	NaN	NaN	NaN	0.0014219	1	14833	14833		112.76	39.628	1	164600			32101	4588	18550	19053	25590	25590					0.009311726920486763
YPEEISSMVL	10	Unmodified	_YPEEISSMVL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1167.5602030386	1	1167.5602	1166.55293	2.5219	0.0029445	-3.496	-0.0040818	-0.97406	-0.0011373	1168.5563966087518	28.943	0.096521	28.943	28.894	28.991	0	60	64	1.582944	0.037077427	1.582944	320.76315	0	7.5132446						167	5	3	NaN	NaN	NaN	0.20271	1	15353	15353		35.296	13.461	1	11295			32102	5882	18551	19054	25591	25591					-0.02368777422293533
YPEEISSMVL	10	Unmodified	_YPEEISSMVL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.2837397526001	2	584.28374	1166.55293	1.8006	0.0010521	-1.6259	-0.00094999	0.1747	0.00010208	584.2835577577058	28.918	0.096521	28.918	28.894	28.991	0	1224	88	0.883646	0.053319573	0.883646	358.11526	0	21.608826						245	5	3	NaN	NaN	NaN	0.27719	1	15354	15354		28.896	9.5592	1	32251			32103	5882	18551	19054	25592	25592					-0.02368777422293533
YPEEISSMVL	10	Unmodified	_YPEEISSMVL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.2837397526001	2	584.28374	1166.55293	1.2172	0.0007112	-1.4295	-0.00083521	-0.21225	-0.00012401	584.2840063202059	28.942	0.16893	28.933	28.885	29.054	-0.0083485	1224	88	0.883646	0.053331077	0.88212657	358.11526	0	21.613495						296	8	3	NaN	NaN	NaN	0.25724	1	14823	14823		30.61	18.561	1	44077			32104	5882	18551	19054	25593	25593					-0.02368777422293533
YPEEISSMVL	10	Unmodified	_YPEEISSMVL_					0	0	0		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1167.5602030386	1	1167.5602	1166.55293	1.9426	0.0022682	-1.0782	-0.0012589	0.86441	0.0010092	1168.5610179539701	28.966	0.12069	28.958	28.886	29.007	-0.0077229	60	58	1.582944	0.033549786	1.5814246	320.76315	0	6.7984314						123	6	2	NaN	NaN	NaN	0.17937	1	14824	14824		37.302	21.84	1	9205.4			32105	5882	18551	19054	25594	25594					-0.02368777422293533
YPEEISSMVL	10	Oxidation (M)	_YPEEISSM(Oxidation (M))VL_		YPEEISSM(1)VL		YPEEISSM(45)VL	0	0	1		ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000173110|ENST00000309758|HSPA6	ENSG00000204389|ENST00000375651|HSPA1A	ENSG00000204389|ENST00000375651|HSPA1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2811970636501	2	592.281197	1182.54784	1.2215	0.0007235	-0.98327	-0.00058237	0.23828	0.00014113	592.2816033448554	24.984	0.19306	24.972	24.875	25.068	-0.012392	1206	115	0.894683	0.06987083	0.89316356	362.5309	0	28.312073						470	9	4	NaN	NaN	NaN	0.10964	1	15311	15311		44.638	18.524	1	93980			32106	5882	18551	19055	25595	25595		601			-0.036130812849251015
YPEEMIVAL	9	Unmodified	_YPEEMIVAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1064.5332600066	1	1064.53326	1063.52598	1.9232	0.0020473	1.7287	0.0018403	3.6519	0.0038876	1064.5353040905684	30.415	0.24133	30.415	30.318	30.56	0	99	115	1.5599792	0.067195654	1.5599792	316.46783	0	13.631744						460	11	2	NaN	NaN	NaN	0.062072	1	11282	11282		41.785	22.621	1	86845			32107	4204	18552	19056	25596	25596					-0.0032384124283453275
YPEEMIVAL	9	Unmodified						0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1064.53326	1063.52598	1.0865	0.0011566	2.6075	0.0027757	3.694	0.0039324	1064.5364339614018	30.414	0.16893	30.407	30.311	30.48	-0.0064106	96	100	1.5617468	0.058338642	1.5602274	316.82642		11.83493	-0.0037138	0.00031247	0.0001241	NaN	41.785	377	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81288			32108	4204	18552	19056							-0.0032384124283453275
YPEEMIVAL	9	Oxidation (M)	_YPEEM(Oxidation (M))IVAL_		YPEEM(1)IVAL		YPEEM(96)IVAL	0	0	1		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1080.5281746286998	1	1080.52817	1079.5209	1.1676	0.0012616	0.13639	0.00014737	1.304	0.001409	1080.529545777699	26.891	0.16891	26.891	26.819	26.988	0	111	85	1.5529068	0.04950726	1.5529068	314.97327	0	10.041473						355	8	3	NaN	NaN	NaN	0.0081087	1	11952	11952		96.245	66.647	1	47980			32109	4204	18552	19057	25597	25597		452			-0.01568145105466101
YPEEMIVAL	9	Oxidation (M)	_YPEEM(Oxidation (M))IVAL_		YPEEM(1)IVAL		YPEEM(100)IVAL	0	0	1		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1080.5281746286998	1	1080.52817	1079.5209	1.5051	0.0016263	0.69872	0.00075499	2.2038	0.0023812	1080.5287006091555	26.915	0.19307	26.904	26.808	27.001	-0.010645	108	67	1.5546752	0.03890264	1.5531558	315.33194	0	7.890564						274	9	3	NaN	NaN	NaN	0.0055068	1	11648	11648		101.55	64.968	1	36487			32110	4204	18552	19057	25598	25598		452			-0.01568145105466101
YPEEMIVAL	9	Oxidation (M)						0	0	1		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1080.52817	1079.5209	1.9748	0.0021338	-5.3625	-0.0057943	-3.3877	-0.0036605	1080.5221472356577	26.529	0.0965	26.518	26.518	26.614	-0.010645	135	64	1.5387528	0.03717172	1.5372335	312.10248		7.5394897	-0.18673	-0.0049715	-0.0078367	NaN	96.245	83	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5752			32111	4204	18552	19057				452			-0.01568145105466101
YPEEVSSMVL	10	Unmodified	_YPEEVSSMVL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1153.5445529744	1	1153.54455	1152.53728	2.4912	0.0028737	0.17573	0.00020271	2.6669	0.0030764	1153.5443853740965	27.205	0.19304	27.205	27.157	27.35	0	66	61	1.579413	0.035321116	1.579413	320.0932	0	7.1584167						241	9	3	NaN	NaN	NaN	0.0029037	1	14884	14884		82.96	44.042	1	26192			32112	1743	18553	19058	25599	25599					-0.032890639393599486
YPEEVSSMVL	10	Unmodified	_YPEEVSSMVL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.2759147205	2	577.275915	1152.53728	1.0232	0.00059069	-1.2833	-0.00074079	-0.26002	-0.0001501	577.2749977855829	27.204	0.2172	27.194	27.122	27.339	-0.010126	1233	64	0.87812483	0.038660824	0.8766054	355.92825	0	15.670288						160	10	2	NaN	NaN	NaN	0.29898	1	14380	14380		27.789	12.613	1	19722			32113	1743	18553	19058	25600	25600					-0.032890639393599486
YPEEVSSMVL	10	Unmodified	_YPEEVSSMVL_					0	0	0		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1153.5445529744	1	1153.54455	1152.53728	1.8805	0.0021692	-0.0051225	-5.909E-06	1.8753	0.0021633	1153.5443622674372	27.204	0.14478	27.194	27.17	27.315	-0.010126	66	70	1.579413	0.0406214	1.5778936	320.0932	0	8.232605						217	7	3	NaN	NaN	NaN	0.040041	1	14381	14381		55.413	33.578	1	22419			32114	1743	18553	19058	25601	25601					-0.032890639393599486
YPEEVSSMVL	10	Oxidation (M)	_YPEEVSSM(Oxidation (M))VL_		YPEEVSSM(1)VL		YPEEVSSM(53)VL	0	0	1		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.27337203155	2	585.273372	1168.53219	2.3608	0.0013817	-1.3357	-0.00078175	1.0251	0.00059996	585.2719327495054	23.345	0.24119	23.345	23.248	23.489	0	1227	82	0.88180584	0.04966384	0.88180584	357.36243	0	20.126862						423	11	4	NaN	NaN	NaN	0.051632	1	15431	15431		52.624	24.835	1	91789			32115	1743	18553	19059	25602	25602		196			-0.045333678019687795
YPEEVSSMVL	10	Oxidation (M)	_YPEEVSSM(Oxidation (M))VL_		YPEEVSSM(1)VL		YPEEVSSM(53)VL	0	0	1		ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532780.5_1_11:122930757-122933127:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	ENST00000527983.5_1_11:122930124-122932032:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.27337203155	2	585.273372	1168.53219	1.9779	0.0011576	-1.71	-0.0010008	0.26788	0.00015678	585.2718535730934	23.368	0.26542	23.355	23.258	23.524	-0.013294	1224	79	0.883646	0.047816634	0.88212657	358.1082	0	19.378265						484	12	5	NaN	NaN	NaN	0.051632	1	14897	14897		52.624	29.506	1	98619			32116	1743	18553	19059	25603	25603		196			-0.045333678019687795
YPEFLANAL	9	Unmodified	_YPEFLANAL_					0	0	0		ENSG00000064703|ENST00000369702|DDX20;ENST00000475700.1_1_1:112303127-112303484:+|nuORF	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.5302235391998	1	1037.53022	1036.52295	1.6482	0.0017101	-1.9521	-0.0020253	-0.30386	-0.00031527	1037.5271903893654	30.342	0.14479	30.342	30.246	30.391	0	138	91	1.5369828	0.053133607	1.5369828	311.90665	0	10.782623						243	7	2	NaN	NaN	NaN	0.03618	1	10063	10063		52.78	20.327	1	33498			32117	672	18554	19060	25604	25604					0.006146516946500924
YPEFLANAL	9	Unmodified	_YPEFLANAL_					0	0	0		ENSG00000064703|ENST00000369702|DDX20;ENST00000475700.1_1_1:112303127-112303484:+|nuORF	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.5302235391998	1	1037.53022	1036.52295	0.93641	0.00097155	-2.6593	-0.0027591	-1.7229	-0.0017875	1037.5268478403882	30.317	0.14474	30.311	30.263	30.407	-0.0064087	135	103	1.5387528	0.060224295	1.5372335	312.26587	0	12.221588						222	7	2	NaN	NaN	NaN	0.041983	1	9853	9853		50.315	23.019	1	29406			32118	672	18554	19060	25605	25605					0.006146516946500924
YPEGFEIHSM	10	Unmodified	_YPEGFEIHSM_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.2658813504501	2	605.265881	1208.51721	1.7667	0.0010693	-2.2461	-0.0013595	-0.47942	-0.00029017	605.2644810231477	22.501	0.43395	22.501	22.356	22.79	0	1146	70	0.93142134	0.04221946	0.93142134	377.32397	0	17.103363						757	19	5	NaN	NaN	NaN	0.039609	1	16685	16685		55.592	33.757	1	214100			32119	729	18555	19061	25606	25606					-0.07870814879311183
YPEGFEIHSM	10	Unmodified	_YPEGFEIHSM_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.2658813504501	2	605.265881	1208.51721	1.2059	0.0007299	-1.4863	-0.00089964	-0.28044	-0.00016974	605.2648060995383	22.476	0.38567	22.462	22.366	22.752	-0.013733	1146	79	0.93142134	0.047739267	0.9299019	377.32397	0	19.339447						768	17	5	NaN	NaN	NaN	0.000399	1	16012	16012		91.563	49.246	1	209320			32120	729	18555	19061	25607	25607					-0.07870814879311183
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(72)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2633386615	2	613.263339	1224.51212	1.6461	0.0010095	-1.2564	-0.00077047	0.38978	0.00023904	613.2626901179198	19.828	0.38453	19.828	19.708	20.093	0	1101	88	0.95892316	0.05315298	0.95892316	388.4078	0	21.529388						884	17	5	NaN	NaN	NaN	0.00909	1	17077	17077		72.428	27.263	1	285650			32121	729	18555	19062	25608	25608		76			-0.09115118741942752
YPEGFEIHSM	10	Oxidation (M)	_YPEGFEIHSM(Oxidation (M))_		YPEGFEIHSM(1)		YPEGFEIHSM(82)	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2633386615	2	613.263339	1224.51212	1.3965	0.00085641	-1.9307	-0.001184	-0.5342	-0.00032761	613.2622918014733	19.827	0.40913	19.813	19.693	20.102	-0.014141	1101	88	0.95892316	0.0531587	0.9574037	388.4078	0	21.531708						818	18	5	NaN	NaN	NaN	0.0032815	1	16393	16393		81.699	42.241	1	264340			32122	729	18555	19062	25609	25609		76			-0.09115118741942752
YPEHISNIISL	11	Unmodified	_YPEHISNIISL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	643.3429775785002	2	643.342978	1284.6714	2.7154	0.001747	-3.1998	-0.0020586	-0.48439	-0.00031163	643.3412297238673	25.95	0.21718	25.95	25.853	26.07	0	1122	100	0.9460945	0.06048441	0.9460945	383.01154	0	24.486176						578	10	5	NaN	NaN	NaN	0.1113	1	18516	18516		56.466	24.79	1	290030			32123	2403	18556	19063	25610	25610					0.04045337877732891
YPEHISNIISL	11	Unmodified	_YPEHISNIISL_					0	0	0		nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ENSG00000124201|ENST00000396105|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	nc|ENSG00000124201|Q9P2E3-2|ZNFX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.3429775785002	2	643.342978	1284.6714	3.1782	0.0020447	-2.769	-0.0017814	0.40924	0.00026328	643.3412049726458	25.974	0.19308	25.962	25.89	26.083	-0.0116	1122	109	0.9460945	0.06600791	0.9445751	383.01154	0	26.72226						540	9	5	NaN	NaN	NaN	0.041446	1	17692	17692		74.794	33.837	1	290270			32124	2403	18556	19063	25611	25611					0.04045337877732891
YPEKIQASL	9	Unmodified	_YPEKIQASL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7873068968	2	524.787307	1047.56006	1.7623	0.00092481	-5.2758	-0.0027687	-3.5136	-0.0018439	524.7836752267233	19.012	0.14399	19.012	18.916	19.06	0	1284	64	0.8468043	0.038736105	0.8468043	343.6396	0	15.719421						282	7	4	NaN	NaN	NaN	0.21462	1	10538	10538		24.393	5.057	1	66761			32125	2346	18557	19064	25612	25612					0.038183232404207956
YPEKIQASL	9	Unmodified	_YPEKIQASL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	524.7873068968	2	524.787307	1047.56006	1.5948	0.00083691	-1.2866	-0.00067519	0.30816	0.00016172	524.7861752093802	19.034	0.24025	19.02	18.924	19.164	-0.014059	1287	76	0.8449601	0.04610449	0.84344065	342.89117	0	18.709534						379	11	3	NaN	NaN	NaN	0.034172	1	10324	10324		53.652	12.695	1	102210			32126	2346	18557	19064	25613	25613					0.038183232404207956
YPENGVVQM	9	Oxidation (M)	_YPENGVVQM(Oxidation (M))_		YPENGVVQM(1)		YPENGVVQM(70)	0	0	1		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	526.7394994244501	2	526.739499	1051.46445	1.9398	0.0010218	-2.6412	-0.0013912	-0.70136	-0.00036943	526.7387702832644	16.973	0.33595	16.973	16.877	17.213	0	1314	85	0.8283535	0.051656544	0.8283535	336.13593	0	20.961609						633	15	5	NaN	NaN	NaN	0.021751	1	10672	10672		69.782	38.221	1	126780			32127	135	18558	19065	25614	25614		9			-0.059227729421081676
YPENGVVQM	9	Oxidation (M)	_YPENGVVQM(Oxidation (M))_		YPENGVVQM(1)		YPENGVVQM(72)	0	0	1		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4717223823	1	1052.47172	1051.46445	2.3476	0.0024708	-0.73127	-0.00076965	1.6164	0.0017012	1052.4708405459974	17.021	0.16801	17.021	16.949	17.117	0	237	52	1.4784646	0.030200124	1.4784646	299.97528	0	6.1275024						187	8	2	NaN	NaN	NaN	0.019939	1	10673	10673		72.076	38.651	1	14435			32128	135	18558	19065	25615	25615		9			-0.059227729421081676
YPENGVVQM	9	Oxidation (M)	_YPENGVVQM(Oxidation (M))_		YPENGVVQM(1)		YPENGVVQM(69)	0	0	1		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4717223823	1	1052.47172	1051.46445	1.9184	0.002019	-0.43814	-0.00046113	1.4802	0.0015579	1052.4716916410596	16.994	0.16795	16.981	16.933	17.101	-0.013294	234	67	1.4802408	0.039072156	1.4787214	300.3357	0	7.9276123						177	8	2	NaN	NaN	NaN	0.022082	1	10455	10455		69.363	41.574	1	14030			32129	135	18558	19065	25616	25616		9			-0.059227729421081676
YPENGVVQM	9	Unmodified	_YPENGVVQM_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1036.4768077602	1	1036.47681	1035.46953	1.4785	0.0015324	-10.088	-0.010456	-8.6096	-0.0089236	1036.4660683928491	21.489	0.24096	21.475	21.354	21.595	-0.014006	204	82	1.4979934	0.047919154	1.496474	303.99844	0	9.724579						468	11	3	NaN	NaN	NaN	0.026469	1	9788	9788		63.731	16.249	1	49233			32130	135	18558	19066	25617	25617					-0.04678469079499337
YPENIVPSF	9	Unmodified	_YPENIVPSF_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.5251381613	1	1065.52514	1064.51786	1.0251	0.0010923	-0.097618	-0.00010401	0.92753	0.00098831	1065.5247281073614	28.266	0.1689	28.257	28.209	28.378	-0.0089779	183	82	1.510409	0.04784298	1.5088896	306.40802	0	9.705627						288	8	2	NaN	NaN	NaN	0.061945	1	11066	11066		41.839	2.3798	1	31594			32131	2923	18559	19067	25618	25618					-0.01181652167952052
YPEPFLIKL	9	Unmodified	_YPEPFLIKL_					0	0	0		nc|ENSG00000163714|O15042-3|U2SURP;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-3|U2SURP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.3260679165501	2	560.326068	1118.63758	1.6759	0.00093903	-2.332	-0.0013067	-0.65616	-0.00036766	560.3243465973013	29.474	0.16896	29.474	29.377	29.546	0	1197	79	0.9001988	0.04781151	0.9001988	365.00616	0	19.386261						276	8	3	NaN	NaN	NaN	0.048656	1	13630	13630		47.482	17.883	1	157270			32132	4253	18560	19068	25619	25619					0.08300961176610144
YPEQEIVNL	9	Unmodified	_YPEQEIVNL_					0	0	0		ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.5571665712	1	1104.55717	1103.54989	2.1067	0.0023269	0.99805	0.0011024	3.1047	0.0034293	1104.5577075359847	25.781	0.096519	25.781	25.757	25.853	0	78	55	1.5723488	0.031792402	1.5723488	318.829	0	6.4466248						113	5	2	NaN	NaN	NaN	0.057383	1	12991	12991		43.776	20.658	1	10623			32133	814	18561	19069	25620	25620					0.0022571551519376953
YPEQEIVNL	9	Unmodified	_YPEQEIVNL_					0	0	0		ENST00000550858.1_1_12:42681476-42682067:+|nuORF;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	ENST00000550858.1_1_12:42681476-42682067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.5571665712	1	1104.55717	1103.54989	2.2802	0.0025186	1.0476	0.0011572	3.3278	0.0036758	1104.5549599696856	25.78	0.096539	25.769	25.745	25.841	-0.0116	81	49	1.5705823	0.028262854	1.5690628	318.4708	0	5.730957						123	5	3	NaN	NaN	NaN	0.064504	1	12644	12644		40.957	13.661	1	9566.1			32134	814	18561	19069	25621	25621					0.0022571551519376953
YPEQKVVTV	9	Unmodified	_YPEQKVVTV_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.7951319289	2	531.795132	1061.57571	2.1688	0.0011534	-1.9094	-0.0010154	0.25946	0.00013798	531.7943349844892	17.621	0.14386	17.621	17.597	17.741	0	1212	76	0.8910048	0.0460099	0.8910048	361.51453	0	18.667938						218	7	4	NaN	NaN	NaN	0.028117	1	11194	11194		61.575	26.278	1	38621			32135	1797	18562	19070	25622	25622					0.04738609757464474
YPEQKVVTV	9	Unmodified	_YPEQKVVTV_					0	0	0		ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	ENST00000548259.1_1_12:110930799-110939856:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	531.7951319289	2	531.795132	1061.57571	1.3012	0.00069195	-0.80688	-0.0004291	0.49428	0.00026286	531.7947736386961	17.642	0.14383	17.628	17.604	17.748	-0.013786	1212	88	0.8910048	0.053382993	0.88948536	361.5145	0	21.659485						220	7	3	NaN	NaN	NaN	0.013093	1	10938	10938		83.529	46.226	1	44402			32136	1797	18562	19070	25623	25623					0.04738609757464474
YPESESIMM	9	Unmodified	_YPESESIMM_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.4482097482	1	1086.44821	1085.44093	1.8706	0.0020323	-0.31206	-0.00033904	1.5585	0.0016933	1086.448585603652	24.068	0.38606	24.068	23.899	24.285	0	156	97	1.5263584	0.05666375	1.5263584	309.5672	0	11.492218						771	17	3	NaN	NaN	NaN	0.018156	1	12189	12189		74.332	52.497	1	106700			32137	4158	18563	19071	25624	25624					-0.09836954770935336
YPESESIMM	9	Unmodified	_YPESESIMM_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.4482097482	1	1086.44821	1085.44093	1.5098	0.0016403	0.54214	0.000589	2.052	0.0022293	1086.4488339198285	24.043	0.3619	24.031	23.91	24.272	-0.012749	156	103	1.5263584	0.06021154	1.5248389	309.56717	0	12.211761						734	16	3	NaN	NaN	NaN	0.025843	1	11879	11879		64.55	39.589	1	100710			32138	4158	18563	19071	25625	25625					-0.09836954770935336
YPESESIMM	9	Oxidation (M)	_YPESESIM(Oxidation (M))M_		YPESESIM(0.786)M(0.214)		YPESESIM(5.7)M(-5.7)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7252004184501	2	551.7252	1101.43585	1.4433	0.00079632	-0.35384	-0.00019522	1.0895	0.0006011	551.725048836467	21.585	0.3615	21.585	21.416	21.778	0	1257	67	0.86339295	0.040525913	0.86339295	350.14893	0	16.435272						482	16	3	NaN	NaN	NaN	0.032764	1	12883	12883		55.494	32.159	2	64815			32139	4158	18563	19072	25626	25626		448;449			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIM(Oxidation (M))M_		YPESESIM(0.982)M(0.018)		YPESESIM(17)M(-17)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.4431243703	1	1102.44312	1101.43585	1.7505	0.0019299	0.28187	0.00031074	2.0324	0.0022406	1102.4438320039362	21.561	0.31335	21.561	21.416	21.73	0	150	70	1.5299006	0.040729165	1.5299006	310.229	0	8.258942						532	14	3	NaN	NaN	NaN	0.0072287	1	12884	12884		98.041	77.486	2	52755			32140	4158	18563	19072	25627	25627		448;449			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIMM(Oxidation (M))_		YPESESIM(0.021)M(0.979)		YPESESIM(-17)M(17)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.4431243703	1	1102.44312	1101.43585	1.6392	0.0018072	0.41569	0.00045827	2.0549	0.0022654	1102.442943593315	20.285	0.28844	20.285	20.189	20.477	0	168	82	1.5192716	0.047822714	1.5192716	308.0737	0	9.697357						337	13	2	NaN	NaN	NaN	0.0094682	1	12885	12885		93.472	65.683	2	53813			32141	4158	18563	19072	25628	25628		448;449			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIM(Oxidation (M))M_		YPESESIM(0.96)M(0.04)		YPESESIM(14)M(-14)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.7252004184501	2	551.7252	1101.43585	1.4842	0.00081889	-1.2318	-0.00067961	0.25244	0.00013928	552.2264234752771	21.537	0.28904	21.523	21.402	21.691	-0.014004	1254	61	0.8652351	0.03684169	0.86371565	350.89603	0	14.941162						328	13	4	NaN	NaN	NaN	0.03623	1	12546	12546		52.758	34.959	2	42032			32142	4158	18563	19072	25629	25629		448;449			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIM(Oxidation (M))M_		YPESESIM(0.978)M(0.022)		YPESESIM(16)M(-16)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.4431243703	1	1102.44312	1101.43585	1.8379	0.0020262	-0.75341	-0.00083059	1.0845	0.0011956	1102.4424771407582	21.537	0.31312	21.523	21.402	21.715	-0.014004	147	67	1.5316714	0.038956285	1.530152	310.5881	0	7.8994446						552	14	3	NaN	NaN	NaN	0.011942	1	12547	12547		87.021	70.162	2	54249			32143	4158	18563	19072	25630	25630		448;449			-0.11081258633566904
YPESESIMM	9	Oxidation (M)	_YPESESIMM(Oxidation (M))_		YPESESIM(0.03)M(0.97)		YPESESIM(-15)M(15)	0	0	1		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.4431243703	1	1102.44312	1101.43585	1.7584	0.0019386	-0.18999	-0.00020945	1.5685	0.0017291	1102.4430521488612	20.309	0.28896	20.295	20.174	20.463	-0.014141	165	97	1.5210435	0.05666983	1.5195241	308.433	0	11.491333						490	13	4	NaN	NaN	NaN	0.021105	1	12548	12548		70.6	50.151	2	54177			32144	4158	18563	19072	25631	25631		448;449			-0.11081258633566904
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(100)M(100)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1118.4380389924002	1	1118.43804	1117.43076	2.2233	0.0024866	-1.7438	-0.0019504	0.47948	0.00053627	1118.4365275843147	17.069	0.19209	17.069	16.997	17.189	0	171	55	1.5174994	0.031897068	1.5174994	307.65982	0	6.466858						276	9	3	NaN	NaN	NaN	0.0040938	1	13554	13554		104.71	70.272	1	22783			32145	4158	18563	19073	25632	25632		448;449			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(44)M(44)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.7226577295002	2	559.722658	1117.43076	2.0348	0.0011389	-1.3741	-0.00076911	0.66072	0.00036982	559.7222483417871	17.042	0.35981	17.029	16.933	17.293	-0.013296	1251	94	0.8670771	0.057113945	0.8655577	351.58084	0	23.158447						821	16	5	NaN	NaN	NaN	0.056143	1	13155	13155		44.302	20.968	1	222830			32146	4158	18563	19073	25633	25633		448;449			-0.12325562496152997
YPESESIMM	9	2 Oxidation (M)	_YPESESIM(Oxidation (M))M(Oxidation (M))_		YPESESIM(1)M(1)		YPESESIM(120)M(120)	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1118.4380389924002	1	1118.43804	1117.43076	1.7911	0.0020033	-0.71454	-0.00079917	1.0766	0.0012041	1118.4371703570175	17.066	0.14404	17.053	16.981	17.125	-0.013294	162	55	1.5228153	0.031897068	1.5212959	308.73758	0	6.466858						205	7	3	NaN	NaN	NaN	0.00010594	1	13156	13156		122.55	72.717	1	16180			32147	4158	18563	19073	25634	25634		448;449			-0.12325562496152997
YPESGYSML	9	Unmodified	_YPESGYSML_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.4499243077	1	1046.44992	1045.44265	1.5051	0.001575	1.4171	0.001483	2.9222	0.003058	1046.450242543769	24.502	0.19302	24.489	24.368	24.561	-0.012747	183	46	1.510409	0.026596308	1.5088896	306.47955	0	5.396698						149	9	2	NaN	NaN	NaN	0.062072	1	10216	10216		41.785	4.4821	1	11230			32148	500	18564	19074	25635	25635					-0.07825577690687169
YPESGYSML	9	Oxidation (M)	_YPESGYSM(Oxidation (M))L_		YPESGYSM(1)L		YPESGYSM(67)L	0	0	1		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.4448389298	1	1062.44484	1061.43756	1.5727	0.0016709	-0.55502	-0.00058968	1.0177	0.0010813	1062.444766827225	20.574	0.096283	20.559	20.487	20.584	-0.014086	180	43	1.5121819	0.024821997	1.5106624	306.77908	0	5.035675						89	5	2	NaN	NaN	NaN	0.023828	1	10910	10910		67.154	39.365	1	6282.5			32149	500	18564	19075	25636	25636		44			-0.09069881553296
YPETLGRLLIL	11	Unmodified	_YPETLGRLLIL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.3871881169002	2	644.387188	1286.75982	1.3725	0.00088442	-2.4686	-0.0015907	-1.0961	-0.00070632	644.3854693109913	30.97	0.12066	30.97	30.922	31.042	0	1092	52	0.9644182	0.031131744	0.9644182	390.42285	0	12.602997						231	6	4	NaN	NaN	NaN	2.3748E-09	1	18549	18549		103.78	72.109	1	62570			32150	2610	18565	19076	25637	25637					0.12791378188217095
YPETLGRLLIL	11	Unmodified	_YPETLGRLLIL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.3871881169002	2	644.387188	1286.75982	1.7823	0.0011485	-4.1401	-0.0026678	-2.3577	-0.0015193	644.3842502292624	30.993	0.19312	30.988	30.915	31.109	-0.0050716	1089	43	0.96624947	0.025636494	0.96473	391.16418	0	10.378357						280	9	4	NaN	NaN	NaN	0.016347	1	17722	17722		64.375	42.604	1	63799			32151	2610	18565	19076	25638	25638					0.12791378188217095
YPETLVNL	8	Unmodified	_YPETLVNL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	948.5036744377002	1	948.503674	947.496398	1.5642	0.0014836	0.28473	0.00027007	1.8489	0.0017537	948.5041176886486	27.277	0.24131	27.277	27.205	27.446	0	279	64	1.4535767	0.03735757	1.4535767	295.3444	0	7.5904846						287	11	3	NaN	NaN	NaN	2.9472E-06	1	7022	7022		136.74	49.719	1	52521			32152	1556	18566	19077	25639	25639					0.020549628033450063
YPETLVNL	8	Unmodified	_YPETLVNL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	474.75547545215005	2	474.755475	947.496398	0.68413	0.00032479	-3.3959	-0.0016122	-2.7118	-0.0012874	474.75390075798816	27.277	0.072372	27.267	27.242	27.315	-0.010126	1329	46	0.81912065	0.027701616	0.8176012	332.86035	0	11.256897						96	4	3	NaN	NaN	NaN	0.62311	1	6886	6886		23.85	4.5657	1	7372.6			32153	1556	18566	19077	25640	25640					0.020549628033450063
YPETLVNL	8	Unmodified	_YPETLVNL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	948.5036744377002	1	948.503674	947.496398	1.1597	0.0011	-0.32413	-0.00030743	0.83562	0.00079259	948.5032064983159	27.277	0.2172	27.267	27.218	27.436	-0.010126	276	67	1.4553556	0.039126158	1.4538362	295.70584	0	7.949829						304	10	4	NaN	NaN	NaN	0.023741	1	6888	6888		93.472	37.978	1	47427			32154	1556	18566	19077	25641	25641					0.020549628033450063
YPETLVNL	8	Unmodified						0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	474.755475	947.496398	1.1795	0.00055999	-2.3383	-0.0011101	-1.1588	-0.00055013	474.75478719224907	27.253	0.072376	27.253	27.229	27.302	0	1329	40	0.81912065	0.024010658	0.81912065	332.86035		9.75705	-0.0066285	0.00052399	0.00075972	NaN	23.85	69	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5816.3			32155	1556	18566	19077							0.020549628033450063
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3737463906501	2	637.373746	1272.73294	1.2477	0.00079526	-2.6125	-0.0016652	-1.3648	-0.00086991	637.3718795268214	37.963	0.24028	37.963	37.891	38.131	0	1098	79	0.960755	0.04764664	0.960755	388.9854	0	19.290924						658	11	5	NaN	NaN	NaN	0.036982	1	18280	18280		53.14	19.715	1	208820			32156	1556	18567	19078	25642	25642					0.1074826957701589
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3737463906501	2	637.373746	1272.73294	0.86268	0.00054985	-1.0971	-0.00069928	-0.23445	-0.00014943	637.3743052297073	39.02	0.14417	39.02	38.876	39.02	0	1095	43	0.9625867	0.025644839	0.9625867	389.72702	0	10.382935						75	7	2	NaN	NaN	NaN	0.085722	1	18281	18281		40.957	10.921	1	4992.6			32157	1556	18567	19078	25643	25643					0.1074826957701589
YPETLVNLIVL	11	Unmodified	_YPETLVNLIVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000595984.5_1_19:19010755-19014100:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3737463906501	2	637.373746	1272.73294	2.0359	0.0012976	-2.1164	-0.0013489	-0.080489	-5.1301E-05	637.3721759159492	37.961	0.26441	37.964	37.892	38.156	0.0034256	1098	76	0.960755	0.045806646	0.9592356	388.9854	0	18.54596						663	12	5	NaN	NaN	NaN	0.0001589	1	17467	17467		84.233	26.033	1	187870			32158	1556	18567	19078	25644	25644					0.1074826957701589
YPEVALHF	8	Unmodified	_YPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	488.25036028449995	2	488.25036	974.486168	1.8246	0.00089087	-0.67329	-0.00032873	1.1513	0.00056213	488.25039170019164	25.129	0.12065	25.129	25.105	25.226	0	1323	34	0.8228144	0.020314455	0.8228144	334.2289	0	8.251801						76	6	2	NaN	NaN	NaN	0.54545	1	7735	7735		28.667	10.886	1	7538			32159	2315	18568	19079	25645	25645					-0.0020960013125659316
YPEVALHF	8	Unmodified						0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	488.25036	974.486168	1.8473	0.00090195	-2.7568	-0.001346	-0.90951	-0.00044407	488.24970533712093	25.153	0.09651	25.141	25.093	25.189	-0.012011	1323	34	0.8228144	0.02031231	0.82129496	334.2289		8.250885	0.0059291	-0.0013953	-0.00075972	NaN	28.667	66	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5572.9			32160	2315	18568	19079							-0.0020960013125659316
YPEVEIFRTL	10	Unmodified	_YPEVEIFRTL_					0	0	0		NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8400707488	2	633.840071	1265.66559	1.8772	0.0011898	-2.6777	-0.0016972	-0.80054	-0.00050742	633.839125118731	28.026	0.19303	28.026	27.953	28.146	0	1113	76	0.9515937	0.045846224	0.9515937	385.29932	0	18.56308						340	9	3	NaN	NaN	NaN	0.060038	1	18127	18127		51.467	30.954	1	46540			32161	4419	18569	19080	25646	25646					0.04338239366029484
YPEVEIFRTL	10	Unmodified	_YPEVEIFRTL_					0	0	0		NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8400707488	2	633.840071	1265.66559	1.1882	0.00075313	-2.5489	-0.0016156	-1.3607	-0.00086248	633.8391776232912	28.049	0.16895	28.04	27.968	28.137	-0.0089779	1110	79	0.95342636	0.047677517	0.9519069	386.04135	0	19.304565						325	8	4	NaN	NaN	NaN	0.14791	1	17327	17327		40.006	23.148	1	41179			32162	4419	18569	19080	25647	25647					0.04338239366029484
YPEVEIFRTL	10	Unmodified						0	0	0		NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	633.840071	1265.66559	1.3465	0.00085349	-2.4709	-0.0015661	-1.1243	-0.00071265	633.8392145120208	28.17	0.048225	28.161	28.137	28.185	-0.0089779	1152	79	0.92775106	0.047703207	0.9262317	375.64548		19.314972	0.067532	0.00019703	-0.012681	NaN	51.467	88	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8024.3			32163	4419	18569	19080							0.04338239366029484
YPEVLGSIL	9	Unmodified	_YPEVLGSIL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	990.5506246303001	1	990.550625	989.543348	1.5409	0.0015264	0.02119	2.0989E-05	1.5621	0.0015474	990.5510677030894	31.766	0.12067	31.766	31.67	31.79	0	177	112	1.5139546	0.06563914	1.5139546	307.42493	0	13.328735						264	6	2	NaN	NaN	NaN	0.074859	1	8203	8203		39.459	0.54089	1	46880			32164	2028	18570	19081	25648	25648					0.04815822354487409
YPEVRIVLM	9	Unmodified	_YPEVRIVLM_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.31517726675	2	560.315177	1118.6158	1.7621	0.00098734	-1.9468	-0.0010908	-0.18469	-0.00010348	560.3147095962032	27.253	0.19303	27.253	27.181	27.374	0	1209	85	0.892844	0.051478148	0.892844	362.02408	0	20.873016						503	9	5	NaN	NaN	NaN	0.052553	1	13628	13628		45.827	20.866	1	256140			32165	2966	18571	19082	25649	25649					0.061238331563799875
YPEVRIVLM	9	Unmodified	_YPEVRIVLM_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.31517726675	2	560.315177	1118.6158	1.4602	0.00081818	-1.849	-0.001036	-0.38879	-0.00021784	560.3147030211552	27.277	0.19305	27.267	27.194	27.387	-0.010126	1206	85	0.894683	0.051472604	0.89316356	362.76974	0	20.870758						498	9	5	NaN	NaN	NaN	0.064504	1	13223	13223		40.957	23.158	1	224050			32166	2966	18571	19082	25650	25650					0.061238331563799875
YPEVRIVLM	9	Oxidation (M)	_YPEVRIVLM(Oxidation (M))_		YPEVRIVLM(1)		YPEVRIVLM(46)	0	0	1		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.3126345777999	2	568.312635	1134.61072	1.8469	0.0010496	-1.0764	-0.00061174	0.77053	0.0004379	568.3122087593232	23.995	0.43414	23.982	23.765	24.199	-0.013048	1206	100	0.894683	0.06069368	0.89316356	362.7075	0	24.605408						947	19	4	NaN	NaN	NaN	0.052553	1	13810	13810		45.827	15.035	1	383480			32167	2966	18571	19083	25651	25651		339			0.04879529293748419
YPEYLITF	8	Unmodified	_YPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1045.5240755287998	1	1045.52408	1044.5168	1.5397	0.0016098	0.75003	0.00078418	2.2898	0.002394	1045.5245029262214	32.297	0.28961	32.297	32.152	32.442	0	141	67	1.5352125	0.038952112	1.5352125	311.51608	0	7.9039307						286	13	2	NaN	NaN	NaN	0.23746	1	10398	10398		47.04	20.309	1	32450			32168	4878	18572	19084	25652	25652					-0.0036786653686249338
YPEYLITF	8	Unmodified	_YPEYLITF_					0	0	0		ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;KPNA1-PARP14|1|fusion;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	ENSG00000173193|ENST00000474629|PARP14	ENSG00000173193|ENST00000474629|PARP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1045.5240755287998	1	1045.52408	1044.5168	0.93529	0.00097787	-0.072385	-7.568E-05	0.8629	0.00090219	1045.5237330739712	32.296	0.16897	32.292	32.22	32.389	-0.0037613	138	67	1.5369828	0.038952112	1.5354633	311.87527	0	7.9039307						246	8	2	NaN	NaN	NaN	0.39717	1	10187	10187		36.586	17.423	1	31852			32169	4878	18572	19084	25653	25653					-0.0036786653686249338
YPFDASASDL	10	Unmodified	_YPFDASASDL_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2429291829	2	543.242929	1084.47131	1.801	0.00097836	3.3664	0.0018288	5.1673	0.0028071	543.2440812729727	15.532	0.071899	15.52	15.448	15.52	-0.012202	1278	40	0.85049206	0.02396655	0.8489726	344.9836	0	9.721527						70	4	2	NaN	NaN	NaN	0.29898	1	11835	11835		27.789	1.6739	1	9744.9	+		32170	10698	18573	19085	25654	25654					-0.06755136789911376
YPFDGHNEGTL	11	Unmodified	_YPFDGHNEGTL_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.27783463275	2	625.277835	1248.54112	0.68916	0.00043092	0.095063	5.9441E-05	0.78423	0.00049036	625.2778395789187	20.694	0.14468	20.68	20.632	20.776	-0.014088	1179	52	0.9112251	0.031229258	0.90970564	369.0087	0	12.646606						153	7	2	NaN	NaN	NaN	0.29849	1	16988	16988		25.681	12.218	1	24109			32171	3118	18574	19086	25655	25655					-0.07321258121282881
YPFESAEAQL	10	Unmodified	_YPFESAEAQL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.77185379785	2	577.771854	1153.52915	2.2187	0.0012819	0.93197	0.00053847	3.1507	0.0018204	577.7717768426053	25.491	0.28952	25.491	25.371	25.66	0	1185	91	0.90755045	0.05516708	0.90755045	367.85153	0	22.360535						426	13	4	NaN	NaN	NaN	0.10581	1	14913	14913		45.165	20.765	1	94678			32172	4540	18575	19087	25656	25656					-0.04146874864477468
YPFESAEAQLL	11	Unmodified	_YPFESAEAQLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.31388578805	2	634.313886	1266.61322	1.4612	0.00092687	-9.2634	-0.0058759	-7.8022	-0.0049491	634.3106160521677	29.474	0.24138	29.474	29.377	29.618	0	1113	70	0.9515937	0.042164862	0.9515937	385.29623	0	17.072357						187	11	2	NaN	NaN	NaN	0.1667	1	18148	18148		33.425	8.8633	1	24056			32173	4540	18576	19088	25657	25657					-0.009423437675877722
YPFESAEAQLL	11	Unmodified	_YPFESAEAQLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.31388578805	2	634.313886	1266.61322	1.2047	0.00076419	-9.0595	-0.0057465	-7.8547	-0.0049824	634.3109150818956	29.473	0.19303	29.466	29.393	29.586	-0.0070667	1113	64	0.9515937	0.038490057	0.95007426	385.29623	0	15.584473						246	9	3	NaN	NaN	NaN	0.21983	1	17342	17342		28.495	13.641	1	30386			32174	4540	18576	19088	25658	25658					-0.009423437675877722
YPFGAAGQ	8	Unmodified	_YPFGAAGQ_					0	0	0		ENST00000257868.9_1_12:56143473-56143599:+|nuORF	ENST00000257868.9_1_12:56143473-56143599:+|nuORF	ENST00000257868.9_1_12:56143473-56143599:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	810.3780799936001	1	810.37808	809.370804	-0.17885	-0.00014494	-1.3146	-0.0010654	-1.4935	-0.0012103	810.3775836144256	55.41	0.07198	55.409	55.386	55.458	-0.00061798	486	55	1.3303722	0.03225851	1.3288528	270.9712	0	6.570465						127	4	3	NaN	NaN	NaN	0.8439	1	4784	4784		3.1533	0	1	15558			32175	6290	18577	19089	25659	25659					-0.041507042622356494
YPFGIDPIW	9	Unmodified	_YPFGIDPIW_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENSG00000105929|ENST00000310018|ATP6V0A4;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1107.5509589812998	1	1107.55096	1106.54368	0.92822	0.001028	-0.45681	-0.00050594	0.4714	0.0005221	1107.5493071960711	35.337	0.072388	35.337	35.337	35.41	0	105	58	1.5564433	0.033592463	1.5564433	315.59326	0	6.811371						94	4	2	NaN	NaN	NaN	0.36492	1	13131	13131		15.175	8.3122	1	6393.6			32176	500;1773	18578	19090	25660	25660					-0.005327579256800163
YPFIDVGL	8	Unmodified	_YPFIDVGL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	923.4872960920001	1	923.487296	922.48002	1.6831	0.0015543	-0.31468	-0.0002906	1.3684	0.0012637	923.4868967905916	32.321	0.26546	32.321	32.273	32.539	0	324	118	1.42687	0.06954098	1.42687	290.03064	0	14.135132						488	12	4	NaN	NaN	NaN	0.12449	1	6448	6448		59.445	20.837	1	132530			32177	1561	18579	19091	25661	25661					0.01567881637231494
YPFIDVGL	8	Unmodified	_YPFIDVGL_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	923.4872960920001	1	923.487296	922.48002	0.81958	0.00075687	-0.17443	-0.00016109	0.64515	0.00059579	923.4865546635967	32.32	0.33784	32.316	32.268	32.606	-0.0037613	321	118	1.4286518	0.06954825	1.4271324	290.39282	0	14.136627						505	15	4	NaN	NaN	NaN	0.078841	1	6325	6325		69.745	31.137	1	135000			32178	1561	18579	19091	25662	25662					0.01567881637231494
YPFIIDAHL	9	Unmodified	_YPFIIDAHL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.7923922747	2	544.792392	1087.57023	1.8065	0.00098414	-0.46564	-0.00025368	1.3408	0.00073047	544.7920773603886	28.339	0.14475	28.339	28.291	28.436	0	1218	82	0.8873258	0.04969603	0.8873258	359.91156	0	20.15741						283	7	4	NaN	NaN	NaN	0.00080915	1	12287	12287		114.61	78.571	1	123480			32179	3054	18580	19092	25663	25663					0.029949309656331025
YPFIIDAHL	9	Unmodified	_YPFIIDAHL_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.7923922747	2	544.792392	1087.57023	1.3346	0.00072707	-1.8604	-0.0010135	-0.52577	-0.00028644	544.7913178386528	28.363	0.16893	28.354	28.305	28.474	-0.0089779	1218	70	0.8873258	0.042329073	0.8858064	359.9116	0	17.16925						304	8	4	NaN	NaN	NaN	0.0055068	1	11978	11978		101.55	60.094	1	120540			32180	3054	18580	19092	25664	25664					0.029949309656331025
YPFLLVGDLM	10	Unmodified	_YPFLLVGDLM_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	584.3095605726	2	584.309561	1166.60457	1.002	0.00058545	-2.4956	-0.0014582	-1.4937	-0.00087276	584.3086033385144	38.203	0.14414	38.203	38.131	38.275	0	1185	40	0.90755045	0.023888946	0.90755045	367.80283	0	9.681488						194	7	4	NaN	NaN	NaN	0.24618	1	15365	15365		31.561	20.013	1	16596			32181	3084	18581	19093	25665	25665					0.027930110622492066
YPFLLVGDLM	10	Oxidation (M)	_YPFLLVGDLM(Oxidation (M))_		YPFLLVGDLM(1)		YPFLLVGDLM(68)	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.30701788365	2	592.307018	1182.59948	0.99913	0.00059179	-1.5284	-0.00090526	-0.52923	-0.00031347	592.3056179602145	34.275	0.26518	34.274	34.153	34.418	-0.0012474	1161	100	0.9222442	0.060628116	0.92072475	373.6987	0	24.566895						608	12	5	NaN	NaN	NaN	0.012458	1	15324	15324		68.108	40.32	1	143420			32182	3084	18581	19094	25666	25666		349			0.015487071996176383
YPFPTFQPAF	10	Unmodified	_YPFPTFQPAF_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.79767461785	2	607.797675	1213.5808	0.63423	0.00038548	-1.7697	-0.0010756	-1.1354	-0.00069011	607.7970230178394	33.069	0.16893	33.069	33.021	33.19	0	1185	49	0.90755045	0.02939701	0.90755045	367.6364	0	11.908356						136	8	2	NaN	NaN	NaN	0.62764	1	16815	16815		13.003	0.95414	1	17721			32183	2739	18582	19095	25667	25667					-0.017450863799240324
YPFPTFQPAF	10	Unmodified	_YPFPTFQPAF_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.79767461785	2	607.797675	1213.5808	0.50882	0.00030926	-2.7896	-0.0016955	-2.2808	-0.0013863	607.7952503669571	33.068	0.12057	33.066	33.042	33.162	-0.0024796	1182	79	0.9093879	0.047739267	0.90786844	368.38074	0	19.338531						144	6	2	NaN	NaN	NaN	0.47601	1	16148	16148		20.449	6.4071	1	17380			32184	2739	18582	19095	25668	25668					-0.017450863799240324
YPFPVPPL	8	Unmodified	_YPFPVPPL_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	929.5131169120001	1	929.513117	928.50584	1.4409	0.0013394	0.1324	0.00012307	1.5733	0.0014624	929.5131339847225	32.925	0.16894	32.925	32.828	32.997	0	327	70	1.425088	0.04099822	1.425088	289.64078	0	8.332642						169	8	2	NaN	NaN	NaN	0.17057	1	6563	6563		52.308	17.869	1	13334			32185	2406	18583	19096	25669	25669					0.03872775879517576
YPFPVPPL	8	Unmodified						0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	929.513117	928.50584	1.0528	0.00097861	-0.74534	-0.00069281	0.30748	0.0002858	929.512693027962	32.899	0.072346	32.897	32.825	32.897	-0.0024757	321	73	1.4286518	0.042783022	1.4271324	290.36508		8.695404	-0.013861	-0.00051287	0.0010221	NaN	52.308	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6849.2			32186	2406	18583	19096							0.03872775879517576
YPFSSSNDEEL	11	Unmodified	_YPFSSSNDEEL_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	644.2724149038501	2	644.272415	1286.53028	2.2092	0.0014233	-0.87841	-0.00056594	1.3307	0.00085736	644.271604577272	23.827	0.31335	23.827	23.73	24.044	0	1131	91	0.94059354	0.05505407	0.94059354	380.77872	0	22.287445						848	14	5	NaN	NaN	NaN	0.026113	1	18538	18538		58.769	36.998	1	170240			32187	8073	18584	19097	25670	25670					-0.10152705286213859
YPFSSSNDEEL	11	Unmodified	_YPFSSSNDEEL_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	644.2724149038501	2	644.272415	1286.53028	2.4199	0.0015591	-0.9795	-0.00063106	1.4404	0.00092803	644.2716932816223	23.85	0.31345	23.837	23.741	24.054	-0.013048	1131	91	0.94059354	0.05505407	0.93907416	380.77872	0	22.287445						678	14	3	NaN	NaN	NaN	0.026113	1	17710	17710		58.769	35.435	1	159610			32188	8073	18584	19097	25671	25671					-0.10152705286213859
YPFSTSVKL	9	Unmodified	_YPFSTSVKL_					0	0	0		nc|ENSG00000150687|O95084-2|PRSS23;ENSG00000150687|ENST00000280258|PRSS23	nc|ENSG00000150687|O95084-2|PRSS23	nc|ENSG00000150687|O95084-2|PRSS23	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.2844000671001	2	521.2844	1040.55425	1.8054	0.00094111	-1.2539	-0.00065363	0.5515	0.00028749	521.2843161190174	23.368	0.096512	23.355	23.307	23.403	-0.013294	1266	88	0.85786515	0.05341184	0.8563457	348.15854	0	21.676819						191	5	3	NaN	NaN	NaN	0.097143	1	10025	10025		36.235	22.498	1	19109			32189	3711	18585	19098	25672	25672					0.0355922472876955
YPGAFPGA	8	Unmodified	_YPGAFPGA_					0	0	0			REV__ENST00000409645.5_1_2:135211141-135211372:+|nuORF	REV__ENST00000409645.5_1_2:135211141-135211372:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	779.3722663342	1	779.372266	778.36499	1.2982	0.0010117	-1.7483	-0.0013626	-0.45013	-0.00035082	779.3699937555598	30.052	0.36197	30.045	29.925	30.287	-0.0064106	528	88	1.3052634	0.052069306	1.303744	266.03366	0	10.612549						549	16	2	NaN	NaN	NaN	0.81214	1	4395	4395		7.5902	0	1	55249	+		32190	12059	18586	19099	25673	25673					-0.03305802773911637
YPGCGLVM	8	Unmodified	_YPGCGLVM_					0	0	0			REV__nc|ENSG00000021826|P31327-2|CPS1	REV__nc|ENSG00000021826|P31327-2|CPS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	420.1931422188	2	420.193142	838.371732	1.2445	0.00052292	-7.2532	-0.0030478	-6.0088	-0.0025248	420.18976930588013	34.443	0.072319	34.443	34.395	34.467	-0.0006485	1428	37	0.7580582	0.022249103	0.75653875	308.61945	0	9.058014						58	4	2	NaN	NaN	NaN	0.84651	1	5112	5112		1.6704	0	1	5370.2	+		32191	8430	18587	19100	25674	25674					-0.053919492091949905
YPGCGLVM	8	Unmodified						0	0	0			REV__nc|ENSG00000021826|P31327-2|CPS1	REV__nc|ENSG00000021826|P31327-2|CPS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	420.193142	838.371732	1.2445	0.00052292	-7.2532	-0.0030478	-6.0088	-0.0025248	420.18976930588013	34.443	0.072319	34.443	34.395	34.467	-0.0006485	1428	37	0.7580582	0.022249103	0.75653875	308.61945		9.058014	-0.037137	-0.00099984	0.00016718	NaN	1.6704	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5370.2	+		32192	8430	18587	19100							-0.053919492091949905
YPGLSISL	8	Unmodified	_YPGLSISL_					0	0	0		ENSG00000104823|ENST00000221418|ECH1;ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENST00000600178.5_1_19:39307991-39322412:-|nuORF	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	849.4716460278001	1	849.471646	848.46437	1.6333	0.0013874	-1.4056	-0.001194	0.2277	0.00019342	849.4704071417656	29.618	0.12067	29.618	29.546	29.667	0	396	49	1.3840506	0.028582692	1.3840506	281.68762	0	5.8172913						86	6	2	NaN	NaN	NaN	0.76633	1	5366	5366		13.737	3.6855	1	6046.9			32193	1493	18588	19101	25675	25675					0.03407595120199858
YPGLSISL	8	Unmodified	_YPGLSISL_					0	0	0		ENSG00000104823|ENST00000221418|ECH1;ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENST00000600178.5_1_19:39307991-39322412:-|nuORF	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.4716460278001	1	849.471646	848.46437	1.1069	0.00094027	2.9588	0.0025134	4.0657	0.0034537	849.4731987397228	29.618	0.096546	29.61	29.562	29.659	-0.0070648	393	40	1.3858368	0.023219705	1.3843174	282.05118	0	4.725769						91	5	2	NaN	NaN	NaN	0.35933	1	5232	5232		38.608	5.4709	1	6389.6			32194	1493	18588	19101	25676	25676					0.03407595120199858
YPGPATQL	8	Unmodified	_YPGPATQL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	846.4355948725	1	846.435595	845.428318	1.372	0.0011614	-0.082185	-6.9564E-05	1.2899	0.0010918	846.4356333876556	20.573	0.16852	20.573	20.525	20.694	0	432	49	1.3625998	0.028622389	1.3625998	277.33774	0	5.8256836						102	8	2	NaN	NaN	NaN	0.11528	1	5331	5331		61.271	24.685	1	8647.6			32195	1414	18589	19102	25677	25677					-0.0005786205666709066
YPGPATQL	8	Unmodified	_YPGPATQL_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	846.4355948725	1	846.435595	845.428318	1.0458	0.00088516	1.3324	0.0011278	2.3781	0.0020129	846.4371747664223	20.598	0.096365	20.584	20.535	20.632	-0.014088	432	40	1.3625998	0.02325201	1.3610804	277.33774	0	4.732605						99	5	2	NaN	NaN	NaN	0.030597	1	5198	5198		87.021	45.236	1	8170.4			32196	1414	18589	19102	25678	25678					-0.0005786205666709066
YPGPAVVL	8	Unmodified	_YPGPAVVL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	815.4661667194001	1	815.466167	814.45889	2.3328	0.0019023	-1.5362	-0.0012527	0.79662	0.00064962	815.4646008164198	26.36	0.096533	26.36	26.312	26.408	0	480	46	1.3339561	0.026880741	1.3339561	271.67285	0	5.474518						88	5	2	NaN	NaN	NaN	0.60626	1	4944	4944		24.901	12.313	1	9312.3			32197	1455	18590	19103	25679	25679					0.04423916328380528
YPGPAVVL	8	Unmodified	_YPGPAVVL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4661667194001	1	815.466167	814.45889	1.871	0.0015257	0.99811	0.00081393	2.8691	0.0023396	815.4668072796937	26.36	0.096529	26.349	26.324	26.421	-0.011135	480	49	1.3339561	0.028665066	1.3324367	271.67282	0	5.837921						102	5	2	NaN	NaN	NaN	0.30174	1	4839	4839		41.978	23.944	1	10281			32198	1455	18590	19103	25680	25680					0.04423916328380528
YPGPPGPG	8	Unmodified	_YPGPPGPG_					0	0	0			REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	741.3566162700001	1	741.356616	740.34934	1.7151	0.0012715	4.4754	0.0033179	6.1905	0.0045894	741.3598909153761	29.98	0.19308	29.98	29.884	30.077	0	555	67	1.2891023	0.039511442	1.2891023	262.97336	0	8.060211						238	9	2	NaN	NaN	NaN	0.81214	1	3913	3913		7.5902	0	1	21499	+		32199	12965	18591	19104	25681	25681					-0.031220892909459508
YPGPPGPG	8	Unmodified	_YPGPPGPG_					0	0	0			REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	741.3566162700001	1	741.356616	740.34934	1.2232	0.0009068	5.2093	0.0038619	6.4324	0.0047687	741.3605230684663	30.004	0.26543	29.997	29.852	30.118	-0.0064106	555	82	1.2891023	0.048504233	1.2875829	262.97336	0	9.894714						259	12	2	NaN	NaN	NaN	0.81214	1	3839	3839		7.5902	0	1	24198	+		32200	12965	18591	19104	25682	25682					-0.031220892909459508
YPGPPGPG	8	Unmodified						0	0	0			REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	741.356616	740.34934	1.7151	0.0012715	4.4754	0.0033179	6.1905	0.0045894	741.3598909153761	29.98	0.19308	29.98	29.884	30.077	0	555	67	1.2891023	0.039511442	1.2891023	262.97336		8.060211	-0.0083997	-0.00037605	0.00075972	NaN	7.5902	238	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21499	+		32201	12965	18591	19104							-0.031220892909459508
YPGPPGPG	8	Unmodified						0	0	0			REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	REV__ENST00000602604.1_1_1:1850109-1850501:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	741.356616	740.34934	1.2232	0.0009068	5.2093	0.0038619	6.4324	0.0047687	741.3605230684663	30.004	0.26543	29.997	29.852	30.118	-0.0064106	555	82	1.2891023	0.048504233	1.2875829	262.97336		9.894714	0.0083997	0.00016802	-0.00075972	NaN	7.5902	259	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24198	+		32202	12965	18591	19104							-0.031220892909459508
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.2534342897	2	490.253434	978.492316	2.017	0.00098886	-1.6702	-0.00081881	0.34686	0.00017005	490.25261366159106	16.71	0.23986	16.71	16.614	16.854	0	1359	70	0.8006399	0.042512596	0.8006399	325.20306	0	17.26773						415	11	3	NaN	NaN	NaN	0.078597	1	7841	7841		38.918	23.742	1	68498			32203	1952	18592	19105	25683	25683					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.2534342897	2	490.253434	978.492316	1.4536	0.00071265	-0.95074	-0.0004661	0.50289	0.00024654	490.25278689485674	16.754	0.23967	16.741	16.621	16.861	-0.013294	1362	76	0.79879075	0.046214342	0.7972713	324.45197	0	18.771301						401	11	4	NaN	NaN	NaN	0.20577	1	7680	7680		24.961	4.4056	1	78950			32204	1952	18592	19105	25684	25684					0.002209181002854166
YPGTYRNN	8	Unmodified	_YPGTYRNN_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	492.73032333415	2	492.730323	983.446094	1.4077	0.00069362	-10.703	-0.0052738	-9.2956	-0.0045802	492.72492177386357	24.261	0.048231	24.261	24.237	24.285	0	1311	133	0.83019954	0.081297755	0.83019954	337.18604	0	33.019135						202	3	3	NaN	NaN	NaN	0.83582	1	7994	7994		4.4131	0.83987	1	29714	+		32205	8332	18593	19106	25685	25685					-0.04629146801812567
YPHFPEFFL	9	Unmodified	_YPHFPEFFL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.7923922747001	2	598.792392	1195.57023	0.97659	0.00058478	-3.5446	-0.0021225	-2.5681	-0.0015377	598.7902055690031	32.201	0.28958	32.201	32.056	32.345	0	1203	106	0.8965218	0.064323425	0.8965218	363.23038	0	26.060974						377	13	4	NaN	NaN	NaN	0.42773	1	16325	16325		12.588	1.0394	1	39695			32206	2274	18594	19107	25686	25686					-0.019730690343294555
YPHFPEFFL	9	Unmodified	_YPHFPEFFL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.7923922747001	2	598.792392	1195.57023	0.43553	0.00026079	-2.9803	-0.0017846	-2.5448	-0.0015238	598.7908833864328	32.248	0.19305	32.244	32.123	32.316	-0.0037613	1197	106	0.9001988	0.064288676	0.8986794	364.72012	0	26.046906						383	9	4	NaN	NaN	NaN	0.24994	1	15686	15686		22.126	11.521	1	37832			32207	2274	18594	19107	25687	25687					-0.019730690343294555
YPHIDKQYL	9	Unmodified	_YPHIDKQYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.8060309662001	2	588.806031	1175.59751	2.2886	0.0013475	-2.2004	-0.0012956	0.088162	5.191E-05	589.8090963397069	18.556	0.11995	18.556	18.508	18.628	0	1194	64	0.902037	0.03861904	0.902037	365.53574	0	15.649719						130	6	3	NaN	NaN	NaN	0.16939	1	15669	15669		27.296	9.3265	1	8966.7			32208	8058	18595	19108	25688	25688					0.01673414506035442
YPHQVPLVL	9	Unmodified	_YPHQVPLVL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-4|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	533.3082095144	2	533.30821	1064.60187	1.7201	0.00091735	-2.082	-0.0011103	-0.36184	-0.00019297	533.3066401140859	24.43	0.1688	24.43	24.381	24.55	0	1248	82	0.8689189	0.049706757	0.8689189	352.5406	0	20.167175						393	8	5	NaN	NaN	NaN	0.12945	1	11344	11344		31.561	2.6655	1	110450			32209	738	18596	19109	25689	25689					0.07214923719607214
YPHQVPLVL	9	Unmodified	_YPHQVPLVL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-4|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	533.3082095144	2	533.30821	1064.60187	1.0428	0.00055611	-0.20541	-0.00010955	0.83735	0.00044656	533.308121669018	24.454	0.19307	24.441	24.393	24.586	-0.012749	1248	82	0.8689189	0.04971218	0.86739945	352.5406	0	20.169373						420	9	4	NaN	NaN	NaN	0.12945	1	11081	11081		31.561	9.7261	1	105270			32210	738	18596	19109	25690	25690					0.07214923719607214
YPHWPARIDEM	11	Unmodified	_YPHWPARIDEM_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENSG00000143321|ENST00000357325|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	472.223928225	3	472.223928	1413.64996	1.4302	0.00067537	-2.4218	-0.0011436	-0.99157	-0.00046824	472.5572232178402	22.236	0.14472	22.236	22.187	22.332	0	1458	61	0.7395112	0.037101984	0.7395112	448.6301	0	22.508179						245	7	4	NaN	NaN	NaN	0.65755	1	20171	20171		7.4554	0.6478	1	29488			32211	3411	18597	19110	25691	25691					-0.04032370422646636
YPHWPARIDEM	11	Unmodified	_YPHWPARIDEM_					0	0	0		ENST00000495212.1_1_1:156715087-156721275:-|nuORF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENSG00000143321|ENST00000357325|HDGF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	ENST00000495212.1_1_1:156715087-156721275:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	472.223928225	3	472.223928	1413.64996	0.16596	7.8369E-05	-2.043	-0.00096475	-1.877	-0.00088638	472.2230209422327	22.332	0.21665	22.318	22.246	22.462	-0.013731	1455	55	0.7413668	0.033391774	0.73984736	449.7558	0	20.257385						279	10	4	NaN	NaN	NaN	0.20668	1	19216	19216		18.429	13.885	1	32707			32212	3411	18597	19110	25692	25692					-0.04032370422646636
YPIAEEKTQL	10	Unmodified	_YPIAEEKTQL_					0	0	0		nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.316428477	2	596.316428	1190.6183	1.9341	0.0011534	-1.705	-0.0010167	0.22909	0.00013661	596.3148258516593	18.508	0.14387	18.508	18.436	18.58	0	1182	46	0.9093879	0.027555227	0.9093879	368.4606	0	11.164703						96	7	3	NaN	NaN	NaN	0.44412	1	16167	16167		21.771	5.1869	1	8904			32213	928	18598	19111	25693	25693					0.03061960095055838
YPIAEEKTQL	10	Unmodified						0	0	0		nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	596.316428	1190.6183	1.6162	0.00096375	-2.2398	-0.0013356	-0.62362	-0.00037187	596.3149034644658	18.506	0.071918	18.492	18.492	18.564	-0.01395	1179	52	0.9112251	0.03122592	0.90970564	369.205		12.651947	-0.008328	-0.00020889	0.00015889	NaN	21.771	86	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10365			32214	928	18598	19111							0.03061960095055838
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000143632|ENST00000366684|ACTA1	ENSG00000143632|ENST00000366684|ACTA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.7820245536501	2	521.782025	1041.5495	1.5375	0.00080224	0.043892	2.2902E-05	1.5814	0.00082514	521.7821072610254	19.13	0.14427	19.116	19.068	19.212	-0.014141	1251	58	0.8670771	0.03500533	0.8655577	351.89273	0	14.206482						178	7	4	NaN	NaN	NaN	0.29681	1	10075	10075		19.118	0	1	21000			32215	3442	18599	19112	25694	25694					0.030383405859993218
YPIEPSGVL	9	Unmodified	_YPIEPSGVL_					0	0	0		QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant;nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant	QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	974.5193245019001	1	974.519325	973.512048	2.3466	0.0022868	-1.9361	-0.0018868	0.41046	0.0004	974.5183422734478	26.094	0.16895	26.094	26.046	26.215	0	276	103	1.4553556	0.060448408	1.4553556	295.59262	0	12.277496						244	8	2	NaN	NaN	NaN	0.078597	1	7704	7704		38.918	7.3568	1	38158			32216	1877	18600	19113	25695	25695					0.024232493203840022
YPIEPSGVL	9	Unmodified	_YPIEPSGVL_					0	0	0		QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant;nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant	QKI|p.E302Q|1|0.24|ENSG00000112531|chr6:163563689-163563689|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	974.5193245019001	1	974.519325	973.512048	2.1656	0.0021105	-3.3592	-0.0032736	-1.1936	-0.0011631	974.5164653271227	26.07	0.19307	26.059	26.011	26.204	-0.011137	276	91	1.4553556	0.053348184	1.4538362	295.59262	0	10.835358						254	9	2	NaN	NaN	NaN	0.055351	1	7555	7555		44.638	17.907	1	39752			32217	1877	18600	19113	25696	25696					0.024232493203840022
YPIGQYTFF	9	Unmodified	_YPIGQYTFF_					0	0	0			REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	568.2765750350001	2	568.276575	1134.5386	1.1023	0.00062644	-6.0014	-0.0034104	-4.899	-0.002784	568.2736821989452	21.248	0.12026	21.234	21.21	21.33	-0.014004	1176	70	0.9130621	0.042274177	0.91154265	370.15872	0	17.138153						150	6	2	NaN	NaN	NaN	0.060816	1	13794	13794		42.318	5.0152	1	20440	+		32218	9710	18601	19114	25697	25697					-0.023290617882821607
YPIGQYTFF	9	Unmodified						0	0	0			REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.276575	1134.5386	1.1023	0.00062644	-6.0014	-0.0034104	-4.899	-0.002784	568.2736821989452	21.248	0.12026	21.234	21.21	21.33	-0.014004	1176	70	0.9130621	0.042274177	0.91154265	370.15872		17.138153	-0.0069006	0.00068282	-0.00075972	NaN	42.318	150	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20440	+		32219	9710	18601	19114							-0.023290617882821607
YPILGPAK	8	Unmodified	_YPILGPAK_					0	0	0			REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	858.5083658851	1	858.508366	857.501089	0.21812	0.00018726	-7.1041	-0.0060989	-6.886	-0.0059117	858.5020944258381	57.187	0.024055	57.186	57.162	57.186	-0.00053787	261	43	1.4642475	0.024893165	1.462728	297.95956	0	5.0654907						42	2	2	NaN	NaN	NaN	0.84876	1	5372	5372		0.39566	0	1	3171.6	+		32220	10930	18602	19115	25698	25698					0.06663891736752703
YPILHFQQFIL	11	Unmodified	_YPILHFQQFIL_					0	0	0			REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	709.8951803245001	2	709.89518	1417.77581	0.84624	0.00060074	-6.426	-0.0045618	-5.5797	-0.003961	709.8906728856275	29.28	0.14476	29.272	29.224	29.368	-0.0077229	1053	40	0.9882094	0.023775876	0.98669	399.66132	0	9.615662						178	7	3	NaN	NaN	NaN	0.51407	1	19247	19247		17.97	6.7994	1	19644	+		32221	13444	18603	19116	25699	25699					0.08363084425081979
YPIPSRPH	8	Unmodified	_YPIPSRPH_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	966.5155765280001	1	966.515577	965.5083	0.92143	0.00089058	-4.5246	-0.0043731	-3.6032	-0.0034825	966.5102863221408	30.534	0.1689	30.529	30.456	30.625	-0.0057545	231	88	1.4820169	0.051523328	1.4804975	301.04254	0	10.465973						352	8	3	NaN	NaN	NaN	0.54545	1	7354	7354		28.667	6.5402	1	31077	+		32222	11146	18604	19117	25700	25700					0.02416624337183748
YPIPSRPH	8	Unmodified						0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	966.515577	965.5083	0.92143	0.00089058	-4.5246	-0.0043731	-3.6032	-0.0034825	966.5102863221408	30.534	0.1689	30.529	30.456	30.625	-0.0057545	231	88	1.4820169	0.051523328	1.4804975	301.04254		10.465973	-0.0033717	-0.0015401	0.0010165	NaN	28.667	352	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31077	+		32223	11146	18604	19117							0.02416624337183748
YPIYDVLQM	9	Unmodified	_YPIYDVLQM_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000493271.1_1_2:96945134-96947649:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.28354278735	2	571.283543	1140.55253	0.52912	0.00030228	2.6501	0.001514	3.1792	0.0018162	571.2851568979603	32.151	0.19304	32.148	32.003	32.196	-0.0037613	1212	49	0.8910048	0.02942884	0.88948536	361.19373	0	11.929779						139	9	3	NaN	NaN	NaN	0.39244	1	13998	13998		14.042	5.7513	1	14496			32224	3460	18605	19118	25701	25701					-0.012121523515133958
YPIYDVLQM	9	Unmodified						0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000493271.1_1_2:96945134-96947649:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.283543	1140.55253	1.2786	0.00073044	0.49356	0.00028196	1.7722	0.0010124	571.2840686480075	32.128	0.12066	32.128	32.008	32.128	0	1218	34	0.8873258	0.020235598	0.8873258	359.70233		8.203064	-0.0096361	-0.0014213	-0.0010798	NaN	14.042	51	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6221.2			32225	3460	18605	19118							-0.012121523515133958
YPIYGYDEL	9	Unmodified	_YPIYGYDEL_					0	0	0		nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.5197184324	1	1132.51972	1131.51244	2.1005	0.0023788	0.059253	6.7105E-05	2.1597	0.002446	1132.519523796368	27.229	0.16891	27.229	27.181	27.35	0	63	103	1.5811787	0.06006515	1.5811787	320.5215	0	12.175812						402	8	3	NaN	NaN	NaN	0.00050979	1	14128	14128		115.51	71.207	1	63912			32226	3065	18606	19119	25702	25702					-0.048053757504249006
YPIYGYDEL	9	Unmodified	_YPIYGYDEL_					0	0	0		nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	nc|ENSG00000137073|Q5T6F2-2|UBAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.5197184324	1	1132.51972	1131.51244	0.88582	0.0010032	0.57396	0.00065002	1.4598	0.0016532	1132.5207563237923	27.253	0.21718	27.242	27.17	27.387	-0.010126	69	88	1.5776473	0.05122924	1.5761279	319.8057	0	10.384705						400	10	3	NaN	NaN	NaN	0.0081087	1	13676	13676		96.245	54.461	1	55304			32227	3065	18606	19119	25703	25703					-0.048053757504249006
YPKIQEKIQFF	11	Unmodified	_YPKIQEKIQFF_					0	0	0		tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.8979199787	2	720.89792	1439.78129	0.96573	0.00069619	-7.1719	-0.0051702	-6.2062	-0.004474	720.8933037556722	30.486	0.14482	30.48	30.384	30.529	-0.0057545	1008	46	1.0156195	0.027386427	1.0141001	410.68613	0	11.07428						153	7	3	NaN	NaN	NaN	0.33431	1	19359	19359		24.4	6.1667	1	11541			32228	13726	18607	19120	25704	25704					0.07898763216871885
YPKIQEKIQFF	11	Unmodified						0	0	0		tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	tr|U7SFV5|U7SFV5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02248PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	720.89792	1439.78129	1.086	0.00078292	-7.6622	-0.0055237	-6.5761	-0.0047407	720.892748373784	30.487	0.19305	30.487	30.415	30.608	0	1008	43	1.0156195	0.025562048	1.0156195	410.68613		10.336548	0.0033666	-0.00037585	0.00075972	NaN	24.4	166	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10766			32229	13726	18607	19120							0.07898763216871885
YPLAETILL	9	Unmodified	_YPLAETILL_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1032.5975748229	1	1032.59757	1031.5903	1.0197	0.001053	-7.6929	-0.0079436	-6.6731	-0.0068906	1033.5895843928067	32.972	0.072407	32.969	32.945	33.018	-0.0024757	141	61	1.5352125	0.03540361	1.5336931	311.567	0	7.1850586						88	4	2	NaN	NaN	NaN	0.12945	1	9653	9653		31.561	1.9627	1	16276			32230	3346	18608	19121	25705	25705					0.07576681905629812
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	544.3417179807501	2	544.341718	1086.66888	0.71331	0.00038828	-5.0993	-0.0027758	-4.386	-0.0023875	544.3395971920893	33.528	0.12052	33.528	33.48	33.6	0	1182	58	0.9093879	0.034918368	0.9093879	368.8641	0	14.163544						174	6	3	NaN	NaN	NaN	0.18779	1	12256	12256		26.115	15.51	1	19187			32231	7027	18609	19122	25706	25706					0.12901534210709542
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	544.3417179807501	2	544.341718	1086.66888	0.5983	0.00032568	-3.3688	-0.0018338	-2.7705	-0.0015081	544.3399631444266	33.551	0.096558	33.549	33.501	33.597	-0.0018463	1179	52	0.9112251	0.03123939	0.90970564	369.6093	0	12.671265						173	5	3	NaN	NaN	NaN	0.10363	1	11946	11946		35.296	16.178	1	16936			32232	7027	18609	19122	25707	25707					0.12901534210709542
YPLEDLPSL	9	Unmodified	_YPLEDLPSL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1046.5404538745	1	1046.54045	1045.53318	1.9601	0.0020513	-0.019593	-2.0505E-05	1.9405	0.0020308	1046.5404099445873	30.366	0.16895	30.366	30.294	30.463	0	153	103	1.5281296	0.06023085	1.5281296	310.07492	0	12.221527						345	8	3	NaN	NaN	NaN	0.025843	1	10448	10448		64.55	36.761	1	44903			32233	7911	18610	19123	25708	25708					0.012232146292262769
YPLEDLPSL	9	Unmodified	_YPLEDLPSL_					0	0	0		nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant;ENSG00000073614|ENST00000399788|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	nc|ENSG00000073614|P29375-2|KDM5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1046.5404538745	1	1046.54045	1045.53318	1.1462	0.0011995	0.059122	6.1873E-05	1.2053	0.0012614	1046.5406168874697	30.341	0.14477	30.335	30.287	30.431	-0.0064106	150	97	1.5299006	0.056687713	1.5283811	310.43427	0	11.502594						314	7	3	NaN	NaN	NaN	0.04947	1	10237	10237		47.136	22.175	1	39195			32234	7911	18610	19123	25709	25709					0.012232146292262769
YPLETFVES	9	Unmodified	_YPLETFVES_					0	0	0		nc|ENSG00000174483|Q8NFJ9-3|BBS1;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	nc|ENSG00000174483|Q8NFJ9-3|BBS1	nc|ENSG00000174483|Q8NFJ9-3|BBS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1084.5197184324	1	1084.51972	1083.51244	1.6031	0.0017386	-0.77581	-0.00084138	0.82728	0.0008972	1084.5176958390334	28.605	0.072412	28.605	28.581	28.653	0	150	70	1.5299006	0.040712	1.5299006	310.29254	0	8.257141						90	4	2	NaN	NaN	NaN	0.62619	1	12115	12115		4.4131	0	1	6490.7			32235	4949	18611	19124	25710	25710					-0.025973757504289097
YPLIQEASL	9	Unmodified	_YPLIQEASL_					0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1033.5564382896998	1	1033.55644	1032.54916	1.3862	0.0014327	0.85552	0.00088423	2.2417	0.0023169	1033.5573692195428	26.988	0.096506	26.988	26.964	27.06	0	159	64	1.5245869	0.037203312	1.5245869	309.40674	0	7.5502014						172	5	3	NaN	NaN	NaN	0.032689	1	9890	9890		55.592	21.153	1	23311			32236	5228	18612	19125	25711	25711					0.034189208661246084
YPLIQEASL	9	Unmodified	_YPLIQEASL_					0	0	0		ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	ENSG00000181472|ENST00000325144|ZBTB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1033.5564382896998	1	1033.55644	1032.54916	1.0786	0.0011148	-0.78364	-0.00080993	0.295	0.0003049	1033.5554140302793	27.011	0.096552	27.001	26.953	27.049	-0.010126	156	64	1.5263584	0.037203312	1.5248389	309.76624	0	7.5502014						150	5	3	NaN	NaN	NaN	0.059222	1	9682	9682		42.995	20.868	1	21390			32237	5228	18612	19125	25712	25712					0.034189208661246084
YPLIQQTTLD	10	Unmodified	_YPLIQQTTLD_					0	0	0			REV__ENST00000461020.5_1_3:50386114-50386910:-|nuORF	REV__ENST00000461020.5_1_3:50386114-50386910:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.316428477	2	596.316428	1190.6183	1.6162	0.00096375	-2.2398	-0.0013356	-0.62362	-0.00037187	596.3149034644658	18.506	0.071918	18.492	18.492	18.564	-0.01395	1179	52	0.9112251	0.03122592	0.90970564	369.205	0	12.651947						86	4	2	NaN	NaN	NaN	0.64611	1	15556	15556		11.739	1.4951	1	10365	+		32238	9165	18613	19126	25713	25713					0.03061960095055838
YPLKSMTEK	9	Unmodified	_YPLKSMTEK_					0	0	0		ENSG00000104879|ENST00000221476|CKM	ENSG00000104879|ENST00000221476|CKM	ENSG00000104879|ENST00000221476|CKM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7889923060001	2	548.788992	1095.56343	1.9103	0.0010483	-6.6632	-0.0036567	-4.7529	-0.0026084	548.786140173228	21.874	0.43372	21.874	21.681	22.115	0	1239	82	0.87444305	0.049706757	0.87444305	354.6538	0	20.159882						916	19	6	NaN	NaN	NaN	0.084037	1	12653	12653		38.131	0.89997	1	267810			32239	1498	18614	19127	25714	25714					0.019472500227720957
YPLLLKEIL	9	Unmodified	_YPLLLKEIL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.3495430128501	2	551.349543	1100.68453	1.0399	0.00057335	-0.91122	-0.0005024	0.12868	7.0945E-05	551.3491751732538	30.753	0.33785	30.753	30.56	30.897	0	1185	55	0.90755045	0.03307879	0.90755045	368.0601	0	13.415222						409	15	3	NaN	NaN	NaN	0.010404	1	12881	12881		91.563	0	1	106750			32240	4912	18615	19128	25715	25715					0.1382182072775322
YPLLLKEIL	9	Unmodified	_YPLLLKEIL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	551.3495430128501	2	551.349543	1100.68453	1.2626	0.00069613	-1.8692	-0.0010306	-0.60656	-0.00033443	551.3483601349411	30.776	0.36195	30.77	30.577	30.939	-0.0057545	1182	64	0.9093879	0.038585663	0.90786844	368.80527	0	15.64856						579	16	4	NaN	NaN	NaN	0.011693	1	12545	12545		87.778	0	1	116760			32241	4912	18615	19128	25716	25716					0.1382182072775322
YPLLSISL	8	Unmodified	_YPLLSISL_					0	0	0		ENST00000581453.1_1_17:73492852-73494804:+|nuORF;ENST00000585105.5_1_17:73489877-73495164:+|nuORF;KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94	ENST00000581453.1_1_17:73492852-73494804:+|nuORF	ENST00000581453.1_1_17:73492852-73494804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	905.5342462846	1	905.534246	904.52697	1.7702	0.0016029	-1.19	-0.0010776	0.58018	0.00052537	905.5327489382383	33.285	0.072376	33.283	33.259	33.331	-0.0024757	279	40	1.4535767	0.023126125	1.4520572	295.54535	0	4.7020874						63	4	2	NaN	NaN	NaN	0.23389	1	6043	6043		47.321	5.8613	1	4585.3			32242	5086	18616	19129	25717	25717					0.0708874118837457
YPLPDDPSV	9	Unmodified	_YPLPDDPSV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4778536177	1	1002.47785	1001.47058	1.6592	0.0016633	8.031	0.0080509	9.6902	0.0097143	1004.4940049264629	24.043	0.12062	24.031	23.982	24.103	-0.012749	255	79	1.4678029	0.046195745	1.4662834	298.00452	0	9.379028						222	6	3	NaN	NaN	NaN	0.062072	1	8474	8474		41.785	10.223	1	19095			32243	3142	18617	19130	25718	25718					-0.030099314389531173
YPLPDSQVPM	10	Unmodified	_YPLPDSQVPM_					0	0	0			REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7786245849501	2	573.778625	1145.5427	1.9053	0.0010932	0.63709	0.00036555	2.5424	0.0014588	573.779699704379	17.093	0.1681	17.093	17.021	17.189	0	1206	82	0.894683	0.04966384	0.894683	362.66592	0	20.131561						329	8	4	NaN	NaN	NaN	0.5358	1	14638	14638		17.97	4.8685	1	49505	+		32244	11709	18618	19131	25719	25719					-0.024253403568764043
YPLPDSQVPM	10	Unmodified						0	0	0			REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	573.778625	1145.5427	1.9053	0.0010932	0.63709	0.00036555	2.5424	0.0014588	573.779699704379	17.093	0.1681	17.093	17.021	17.189	0	1206	82	0.894683	0.04966384	0.894683	362.66592		20.131561	0.0083521	-0.0021881	0.00075972	NaN	17.97	329	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49505	+		32245	11709	18618	19131							-0.024253403568764043
YPLQLAELL	9	Unmodified	_YPLQLAELL_					0	0	0		nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1059.6084738602	1	1059.60847	1058.6012	1.7168	0.0018191	-2.1171	-0.0022433	-0.40029	-0.00042415	1059.6062021381513	34.734	0.096409	34.734	34.71	34.806	0	102	67	1.5582114	0.038877964	1.5582114	316.12805	0	7.887512						124	5	2	NaN	NaN	NaN	0.16171	1	11041	11041		27.789	11.372	1	22467			32246	2984	18619	19132	25720	25720					0.07424084279909948
YPLQLAELL	9	Unmodified	_YPLQLAELL_					0	0	0		nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.3078751634001	2	530.307875	1058.6012	0.836	0.00044334	-1.7285	-0.00091663	-0.89249	-0.00047329	530.306447021317	34.757	0.12045	34.756	34.708	34.828	-0.0006485	1248	61	0.8689189	0.036821842	0.86739945	352.5661	0	14.940521						147	6	3	NaN	NaN	NaN	0.25448	1	10804	10804		21.835	4.036	1	20324			32247	2984	18619	19132	25721	25721					0.07424084279909948
YPLQLAELL	9	Unmodified	_YPLQLAELL_					0	0	0		nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4;ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	nc|ENSG00000136002|Q9NR80-3|ARHGEF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1059.6084738602	1	1059.60847	1058.6012	1.4502	0.0015367	-1.575	-0.0016689	-0.1248	-0.00013224	1059.605935037369	34.757	0.096344	34.756	34.708	34.804	-0.0006485	96	64	1.5617468	0.03710878	1.5602274	316.8453	0	7.528595						139	5	3	NaN	NaN	NaN	0.10363	1	10805	10805		35.296	9.1815	1	20720			32248	2984	18619	19132	25722	25722					0.07424084279909948
YPLTIATLL	9	Unmodified	_YPLTIATLL_					0	0	0		ENST00000484027.1_1_1:155108806-155110754:+|nuORF;ENST00000368405.7_1_1:155108359-155110754:+|nuORF;ENST00000490276.5_1_1:155108359-155110646:+|nuORF;nc|ENSG00000169241|Q9BRV3-2|SLC50A1;nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1	ENST00000484027.1_1_1:155108806-155110754:+|nuORF	ENST00000484027.1_1_1:155108806-155110754:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1004.6026602008002	1	1004.60266	1003.59538	1.2589	0.0012647	-0.99998	-0.0010046	0.25893	0.00026012	1004.6011803351942	34.879	0.096443	34.879	34.855	34.951	0	141	58	1.5352125	0.03363514	1.5352125	311.68158	0	6.8286743						167	5	3	NaN	NaN	NaN	0.02781	1	8748	8748		61.977	17.674	1	17190			32249	4665	18620	19133	25723	25723					0.09372985768243325
YPLTIATLL	9	Unmodified	_YPLTIATLL_					0	0	0		ENST00000484027.1_1_1:155108806-155110754:+|nuORF;ENST00000368405.7_1_1:155108359-155110754:+|nuORF;ENST00000490276.5_1_1:155108359-155110646:+|nuORF;nc|ENSG00000169241|Q9BRV3-2|SLC50A1;nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1	ENST00000484027.1_1_1:155108806-155110754:+|nuORF	ENST00000484027.1_1_1:155108806-155110754:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1004.6026602008002	1	1004.60266	1003.59538	1.4387	0.0014454	-0.8633	-0.00086728	0.57544	0.00057809	1004.6017521365825	34.877	0.096436	34.877	34.853	34.95	-4.5776E-05	138	61	1.5369828	0.03540361	1.5354633	312.041	0	7.187683						153	5	3	NaN	NaN	NaN	0.02781	1	8574	8574		61.977	17.674	1	18332			32250	4665	18620	19133	25724	25724					0.09372985768243325
YPLTLEMDL	9	Unmodified	_YPLTLEMDL_					0	0	0		ENSG00000160683|ENST00000292174|CXCR5	ENSG00000160683|ENST00000292174|CXCR5	ENSG00000160683|ENST00000292174|CXCR5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5438246929	1	1094.54382	1093.53655	0.84138	0.00092093	-0.92242	-0.0010096	-0.081041	-8.8703E-05	1094.5425197298323	31.572	0.24133	31.568	31.375	31.616	-0.0044155	78	79	1.5723488	0.045936942	1.5708294	318.86508	0	9.315796						302	11	2	NaN	NaN	NaN	0.17818	1	12227	12227		26.732	3.3971	1	33686			32251	4066	18621	19134	25725	25725					-0.006478585883996857
YPLYDLDL	8	Unmodified	_YPLYDLDL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.5033400867	1	1011.50334	1010.49606	1.3624	0.0013781	-0.13647	-0.00013804	1.226	0.0012401	1011.5030551180898	31.187	0.43436	31.187	31.091	31.525	0	180	145	1.5121819	0.08512199	1.5121819	306.97748	0	17.279999						948	19	3	NaN	NaN	NaN	0.032886	1	8998	8998		100.37	19.371	1	254530			32252	1143	18622	19135	25726	25726					-0.008764569165350622
YPLYDLDL	8	Unmodified	_YPLYDLDL_					0	0	0		nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP	nc|ENSG00000096696|P15924-2|DSP	nc|ENSG00000096696|P15924-2|DSP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.5033400867	1	1011.50334	1010.49606	1.7083	0.0017279	-0.15035	-0.00015207	1.5579	0.0015758	1011.5033070854522	31.21	0.38609	31.205	31.084	31.47	-0.0050716	180	145	1.5121819	0.08512199	1.5106624	306.97748	0	17.279999						903	17	3	NaN	NaN	NaN	5.5958E-05	1	8820	8820		128.85	41.052	1	267200			32253	1143	18622	19135	25727	25727					-0.008764569165350622
YPNERFELL	9	Unmodified	_YPNERFELL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.80348827725	2	590.803488	1179.59242	1.5823	0.00093481	-2.9575	-0.0017473	-1.3752	-0.00081249	591.3026417864712	24.767	0.28958	24.767	24.695	24.985	0	1176	82	0.9130621	0.049604833	0.9130621	369.98892	0	20.100769						434	13	3	NaN	NaN	NaN	0.032689	1	15813	15813		55.592	17.461	1	96173			32254	4279	18623	19136	25728	25728					0.009811106434199246
YPNERFELL	9	Unmodified						0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	590.803488	1179.59242	1.1481	0.0006783	0.88147	0.00052077	2.0296	0.0011991	590.8032580902101	24.767	0.31368	24.755	24.682	24.996	-0.012392	1176	112	0.9130621	0.067999065	0.91154265	369.98892		27.554443	-0.0062738	0.0036484	-0.00075972	NaN	55.592	343	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87362			32255	4279	18623	19136							0.009811106434199246
YPNFLVNEL	9	Unmodified	_YPNFLVNEL_					0	0	0		nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	554.7873068968	2	554.787307	1107.56006	1.0796	0.00059893	-3.423	-0.0018991	-2.3435	-0.0013001	554.7863497972386	31.114	0.16894	31.109	31.036	31.205	-0.0050716	1215	52	0.8891654	0.03127992	0.88764596	360.57632	0	12.684692						167	8	2	NaN	NaN	NaN	0.21451	1	12803	12803		24.4	5.2819	1	16246			32256	3406	18624	19137	25729	25729					0.010583232404314913
YPNFLVNEL	9	Unmodified						0	0	0		nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	nc|ENSG00000143207|Q8NHY2-2|COP1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	554.787307	1107.56006	0.50003	0.00027741	-1.2242	-0.00067915	-0.72413	-0.00040174	554.7868483617924	31.115	0.24131	31.115	31.018	31.259	0	1215	46	0.8891654	0.02759999	0.8891654	360.5763		11.192383	0.0030384	0.00096958	0.00075972	NaN	24.4	217	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16580			32257	3406	18624	19137							0.010583232404314913
YPNKYESII	9	Unmodified	_YPNKYESII_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.7925892399501	2	563.792589	1125.57063	1.6135	0.00090967	-2.3503	-0.0013251	-0.73682	-0.00041541	563.7910781288547	20.766	0.19287	20.766	20.718	20.911	0	1203	46	0.8965218	0.02758205	0.8965218	363.48798	0	11.182953						220	9	4	NaN	NaN	NaN	0.23358	1	13908	13908		25.801	5.2455	1	34385			32258	340	18625	19138	25730	25730					0.012863058948596517
YPNKYESII	9	Unmodified	_YPNKYESII_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.R419H|1|0.23|ENSG00000006125|chr17:35636441-35636441|G/A|missense_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.7925892399501	2	563.792589	1125.57063	0.94433	0.0005324	-0.90043	-0.00050766	0.043896	2.4748E-05	563.7917996686023	20.791	0.24076	20.776	20.728	20.969	-0.014086	1203	58	0.8965218	0.034941077	0.89500237	363.48798	0	14.166595						243	11	4	NaN	NaN	NaN	0.13384	1	13480	13480		34.454	8.339	1	35158			32259	340	18625	19138	25731	25731					0.012863058948596517
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.78476420785	2	556.784764	1111.55498	1.6349	0.0009103	-1.743	-0.00097048	-0.10809	-6.0182E-05	556.7836686086396	19.108	0.23984	19.108	19.012	19.252	0	1221	55	0.885486	0.03312534	0.885486	359.06836	0	13.432465						337	11	4	NaN	NaN	NaN	0.032689	1	13339	13339		55.592	11.289	1	64992			32260	1213	18626	19139	25732	25732					0.0036601937779323634
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.78476420785	2	556.784764	1111.55498	1.5568	0.0008668	-0.78412	-0.00043659	0.77268	0.00043022	556.7840914485596	19.154	0.24028	19.14	19.02	19.26	-0.014141	1221	58	0.885486	0.034971297	0.88396657	359.06836	0	14.181						279	11	4	NaN	NaN	NaN	0.024359	1	12965	12965		66.481	38.692	1	56873			32261	1213	18626	19139	25733	25733					0.0036601937779323634
YPNLSISFR	9	Unmodified	_YPNLSISFR_					0	0	0		ENST00000559040.1_1_15:49448112-49518881:+|nuORF	ENST00000559040.1_1_15:49448112-49518881:+|nuORF	ENST00000559040.1_1_15:49448112-49518881:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	366.19770788283336	3	366.197708	1095.57129	2.4821	0.00090892	-2.8862	-0.0010569	-0.40417	-0.00014801	366.19627350622653	15.987	0.1198	15.975	15.951	16.07	-0.012611	1464	34	0.73579943	0.020418286	0.73428	447.62958	0	12.4216						85	6	2	NaN	NaN	NaN	0.64666	1	12333	12333		1.8901	0	1	8512			32262	7588	18627	19140	25734	25734					0.027331453345595946
YPNMGGVE	8	Unmodified	_YPNMGGVE_					0	0	0		nc|ENSG00000165195|P37287-2|PIGA;ENSG00000165195|ENST00000333590|PIGA	nc|ENSG00000165195|P37287-2|PIGA	nc|ENSG00000165195|P37287-2|PIGA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	866.3712800562001	1	866.37128	865.364004	2.0453	0.001772	4.5886	0.0039755	6.6339	0.0057475	866.3747859135852	26.36	0.1448	26.36	26.336	26.481	0	411	52	1.3751161	0.030386925	1.3751161	279.78204	0	6.182556						130	7	2	NaN	NaN	NaN	0.77489	1	5606	5606		12.588	2.5363	1	12010			32263	4384	18628	19141	25735	25735					-0.07406385205115384
YPNPFARQ	8	Unmodified	_YPNPFARQ_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.75105877625	2	496.751059	991.487565	1.5411	0.00076556	1.7047	0.00084681	3.2458	0.0016124	496.7524843487034	27.229	0.072346	27.229	27.205	27.277	0	1302	34	0.8357362	0.020299077	0.8357362	339.39676	0	8.243561						48	4	2	NaN	NaN	NaN	0.84207	1	8260	8260		3.5732	0	1	3465.7	+		32264	9188	18629	19142	25736	25736					-0.008519660424894937
YPNTYIFDLF	10	Unmodified	_YPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	646.8135216473	2	646.813522	1291.61249	1.0401	0.00067275	-2.8649	-0.001853	-1.8248	-0.0011803	646.811409222931	37.65	0.16851	37.65	37.554	37.723	0	1122	55	0.9460945	0.03298968	0.9460945	382.98965	0	13.354614						164	8	3	NaN	NaN	NaN	0.24484	1	18615	18615		31.675	18.212	1	12284			32265	1292	18630	19143	25737	25737					-0.021651384166261778
YPNTYIFDLF	10	Unmodified	_YPNTYIFDLF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	646.8135216473	2	646.813522	1291.61249	1.5074	0.00097504	-1.561	-0.0010097	-0.0536	-3.4669E-05	646.8118942637326	37.624	0.14431	37.627	37.603	37.747	0.0028229	1122	58	0.9460945	0.03482431	0.9445751	382.98962	0	14.09729						164	7	3	NaN	NaN	NaN	0.039609	1	17785	17785		55.592	35.143	1	11530			32266	1292	18630	19143	25738	25738					-0.021651384166261778
YPNYCSFKS	9	Unmodified	_YPNYCSFKS_					0	0	0		ENSG00000111644|ENST00000229243|ACRBP;ENST00000542357.1_1_12:6747897-6752833:-|nuORF	ENSG00000111644|ENST00000229243|ACRBP	ENSG00000111644|ENST00000229243|ACRBP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.7420421134001	2	554.742042	1107.46953	1.5708	0.00087139	5.1605	0.0028627	6.7313	0.0037341	555.2469382028585	30.077	0.096584	30.077	30.029	30.125	0	1251	43	0.8670771	0.0257864	0.8670771	351.61932	0	10.45697						83	5	2	NaN	NaN	NaN	0.63698	1	13154	13154		3.9685	0.7569	1	5506.3			32267	1822	18631	19144	25739	25739					-0.07990469079504692
YPPLINLWE	9	Unmodified	_YPPLINLWE_					0	0	0		ENSG00000173114|ENST00000308478|LRRN3;ENSG00000175928|ENST00000319331|LRRN1	ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.8054996499501	2	572.8055	1143.59645	1.2138	0.00069527	-5.1483	-0.002949	-3.9345	-0.0022537	572.8034261696993	19.587	0.24075	19.573	19.428	19.669	-0.014141	1215	61	0.8891654	0.03678602	0.88764596	360.43665	0	14.911774						213	11	4	NaN	NaN	NaN	0.13602	1	14103	14103		30.61	1.7145	1	39277			32268	4874	18632	19145	25740	25740					0.030392001371410515
YPPVQVLF	8	Unmodified	_YPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	481.77092855110004	2	481.770929	961.527304	0.93361	0.00044979	-1.5178	-0.00073123	-0.58418	-0.00028144	481.77014974007363	31.115	0.14481	31.115	31.042	31.187	0	1305	70	0.83389086	0.042452812	0.83389086	338.79172	0	17.24765						181	7	2	NaN	NaN	NaN	0.8439	1	7377	7377		3.1533	0.36816	1	16871			32269	2061	18633	19146	25741	25741					0.045001609082419236
YPPYEPVEG	9	Unmodified	_YPPYEPVEG_					0	0	0			REV__nc|ENSG00000064666|Q99439-2|CNN2	REV__nc|ENSG00000064666|Q99439-2|CNN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.4778536177	1	1050.47785	1049.47058	2.3888	0.0025094	2.1884	0.0022989	4.5773	0.0048083	1050.4800741727927	26.553	0.048288	26.553	26.553	26.601	0	144	46	1.533442	0.026562572	1.533442	311.13766	0	5.3895874						57	3	2	NaN	NaN	NaN	0.55027	1	10598	10598		7.5404	0.67717	1	3396.6	+		32270	8531	18634	19147	25742	25742					-0.052179314389377396
YPPYEPVEG	9	Unmodified						0	0	0			REV__nc|ENSG00000064666|Q99439-2|CNN2	REV__nc|ENSG00000064666|Q99439-2|CNN2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1050.47785	1049.47058	2.3888	0.0025094	2.1884	0.0022989	4.5773	0.0048083	1050.4800741727927	26.553	0.048288	26.553	26.553	26.601	0	144	46	1.533442	0.026562572	1.533442	311.13766		5.3895874	0	0	0	NaN	7.5404	57	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3396.6	+		32271	8531	18634	19147							-0.052179314389377396
YPQENIIDTF	10	Unmodified	_YPQENIIDTF_					0	0	0		ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1	ENST00000587014.1_1_17:43180336-43181457:+|nuORF	ENST00000587014.1_1_17:43180336-43181457:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.29823572385	2	620.298236	1238.58192	1.488	0.000923	-1.5001	-0.00093051	-0.012113	-7.5134E-06	620.2974960101652	28.436	0.14481	28.436	28.388	28.532	0	1182	76	0.9093879	0.04590559	0.9093879	368.29712	0	18.591522						321	7	3	NaN	NaN	NaN	0.1802	1	17490	17490		37.231	11.116	1	58410			32272	3018	18635	19148	25743	25743					-0.027829168016751282
YPQENIIDTF	10	Unmodified	_YPQENIIDTF_					0	0	0		ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1	ENST00000587014.1_1_17:43180336-43181457:+|nuORF	ENST00000587014.1_1_17:43180336-43181457:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	620.29823572385	2	620.298236	1238.58192	0.72752	0.00045128	-1.3387	-0.00083039	-0.61117	-0.00037911	620.2989172432825	28.435	0.21717	28.426	28.378	28.595	-0.0089798	1182	91	0.9093879	0.05507785	0.90786844	368.29712	0	22.306244						426	10	4	NaN	NaN	NaN	0.031913	1	16755	16755		58.769	20.639	1	67008			32273	3018	18635	19148	25744	25744					-0.027829168016751282
YPQFCMRT	8	Unmodified	_YPQFCMRT_					0	0	0			REV__ENSG00000085840|ENST00000371568|ORC1	REV__ENSG00000085840|ENST00000371568|ORC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.2333300118	2	523.23333	1044.45211	2.093	0.0010951	7.4701	0.0039086	9.563	0.0050037	523.2374248581116	25.949	0.21722	25.938	25.793	26.01	-0.0116	1293	43	0.84127116	0.02582264	0.8397517	341.40732	0	10.479431						175	10	4	NaN	NaN	NaN	0.8439	1	10177	10177		3.1533	0.36816	1	15018	+		32274	8687	18636	19149	25745	25745					-0.06834087886159068
YPQFLCEP	8	Unmodified	_YPQFLCEP_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.72840342189994	2	498.728403	995.442254	0.86744	0.00043262	-0.58339	-0.00029095	0.28405	0.00014166	498.72855931660905	28.797	0.072395	28.789	28.765	28.837	-0.0083504	1278	103	0.85049206	0.062624216	0.8489726	345.3704	0	25.430603						179	4	3	NaN	NaN	NaN	0.80692	1	8223	8223		8.2903	0.74991	1	17249			32275	746	18637	19150	25746	25746					-0.05564952619897667
YPQFLCEP	8	Unmodified						0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	498.728403	995.442254	1.5096	0.0007529	-1.2842	-0.00064046	0.22544	0.00011243	498.7278043683426	28.798	0.096563	28.798	28.774	28.87	0	1278	106	0.85049206	0.0644626	0.85049206	345.3704		26.177155	0.0045524	-0.0003366	0.00075972	NaN	8.2903	153	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16388			32276	746	18637	19150							-0.05564952619897667
YPQLYVSGEL	10	Unmodified	_YPQLYVSGEL_					0	0	0		ENST00000405027.1_1_6:3978829-3979330:+|nuORF;ENSG00000108010|ENST00000331244|GLRX3	ENST00000405027.1_1_6:3978829-3979330:+|nuORF	ENST00000405027.1_1_6:3978829-3979330:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	584.7978715831001	2	584.797872	1167.58119	0.91059	0.00053251	5.373	0.0031421	6.2836	0.0036746	584.8007084205965	33.43	0.096512	33.428	33.404	33.501	-0.0018501	1188	76	0.90571284	0.04592049	0.9041934	367.05447	0	18.610016						101	5	2	NaN	NaN	NaN	0.33935	1	14867	14867		26.115	4.28	1	7549			32277	1662	18638	19151	25747	25747					0.004102885493011854
YPQNPDHVL	9	Unmodified	_YPQNPDHVL_					0	0	0		nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	nc|ENSG00000126561|P42229-2|STAT5A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	541.7669058057	2	541.766906	1081.51926	1.8197	0.00098583	1.1152	0.00060417	2.9348	0.00159	541.7679703523991	17.81	0.23986	17.796	17.7	17.94	-0.013784	1275	73	0.85233563	0.044219613	0.8508162	345.74326	0	17.937317						270	11	2	NaN	NaN	NaN	0.030696	1	11729	11729		58.2	8.3667	1	30665			32278	2507	18639	19152	25748	25748					-0.018240180791963212
YPQRLQLTW	9	Unmodified	_YPQRLQLTW_					0	0	0		ENST00000448467.1_1_22:30939341-30940067:+|nuORF;nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.82729772455	2	602.827298	1203.64004	1.1614	0.00070011	-1.4822	-0.00089351	-0.32082	-0.0001934	602.8266067948737	24.333	0.12065	24.333	24.309	24.43	0	1164	109	0.9204082	0.06615049	0.9204082	372.87955	0	26.799194						386	6	3	NaN	NaN	NaN	0.27608	1	16585	16585		20.449	6.0236	1	81393			32279	5751	18640	19153	25749	25749					0.04636809634257588
YPQRLQLTW	9	Unmodified						0	0	0		ENST00000448467.1_1_22:30939341-30940067:+|nuORF;nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	602.827298	1203.64004	1.051	0.00063358	-0.72531	-0.00043724	0.32569	0.00019634	602.8267316349824	24.357	0.12067	24.344	24.32	24.441	-0.012747	1179	106	0.9112251	0.06431645	0.90970564	369.15924		26.056152	0.0055654	0.00032062	-0.0053513	NaN	20.449	327	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75333			32280	5751	18640	19153							0.04636809634257588
YPQTDVFL	8	Unmodified	_YPQTDVFL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.4880243735	1	982.488024	981.480748	1.7589	0.0017281	-1.7944	-0.001763	-0.03555	-3.4927E-05	982.485118205875	27.615	0.12063	27.615	27.567	27.688	0	252	52	1.4695803	0.030212998	1.4695803	298.4479	0	6.1357727						134	6	2	NaN	NaN	NaN	0.65644	1	7934	7934		21.771	7.7295	1	12816			32281	3003	18641	19154	25750	25750					-0.010733237137174001
YPQTDVFL	8	Unmodified	_YPQTDVFL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;ENSG00000128340|ENST00000249071|RAC2;nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	982.4880243735	1	982.488024	981.480748	1.4768	0.001451	-0.70313	-0.00069082	0.77371	0.00076016	982.4867736996798	27.639	0.12063	27.629	27.581	27.702	-0.009552	249	52	1.4713576	0.03020978	1.4698381	298.80884	0	6.1351013						127	6	2	NaN	NaN	NaN	0.67765	1	7759	7759		20.449	1.3303	1	11593			32282	3003	18641	19154	25751	25751					-0.010733237137174001
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.36659006055	2	642.36659	1282.71863	1.3094	0.00084112	6.2844	0.0040369	7.5938	0.004878	642.8731242575664	33.768	0.16899	33.766	33.694	33.863	-0.0018463	1095	46	0.9625867	0.027475119	0.96106726	389.6944	0	11.123047						144	8	2	NaN	NaN	NaN	0.40641	1	17661	17661		23.334	1.4994	1	15979			32283	2093	18642	19155	25752	25752					0.08857661939350692
YPRTPAHT	8	Unmodified	_YPRTPAHT_					0	0	0			REV__ENSG00000176472|ENST00000314228|ZNF575	REV__ENSG00000176472|ENST00000314228|ZNF575	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	471.74323374415	2	471.743234	941.471915	1.2846	0.00060601	-8.4686	-0.003995	-7.1839	-0.003389	471.739373172852	14.789	0.072033	14.789	14.765	14.837	0	1344	34	0.8098828	0.020327687	0.8098828	329.13657	0	8.261169						40	4	2	NaN	NaN	NaN	0.78264	1	6844	6844		11.548	0.37812	1	2679.1	+		32284	10749	18643	19156	25753	25753					-0.0011625255953049418
YPRTPAHT	8	Unmodified						0	0	0			REV__ENSG00000176472|ENST00000314228|ZNF575	REV__ENSG00000176472|ENST00000314228|ZNF575	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	471.743234	941.471915	1.2846	0.00060601	-8.4686	-0.003995	-7.1839	-0.003389	471.739373172852	14.789	0.072033	14.789	14.765	14.837	0	1344	34	0.8098828	0.020327687	0.8098828	329.13657		8.261169	0	0	0	NaN	11.548	40	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2679.1	+		32285	10749	18643	19156							-0.0011625255953049418
YPSASVPI	8	Unmodified	_YPSASVPI_					0	0	0		nc|ENSG00000146918|Q86XI2-2|NCAPG2	nc|ENSG00000146918|Q86XI2-2|NCAPG2	nc|ENSG00000146918|Q86XI2-2|NCAPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	833.4403458994001	1	833.440346	832.433069	1.3003	0.0010837	-0.51435	-0.00042868	0.7859	0.000655	833.4404055425799	29.666	0.07239	29.659	29.635	29.707	-0.0070648	474	55	1.3375392	0.0322448	1.3360198	272.305	0	6.5646057						85	4	2	NaN	NaN	NaN	0.79379	1	5052	5052		10.052	0	1	5587.8			32286	7953	18644	19157	25754	25754					0.01015022086096451
YPSEFATYL	9	Unmodified	_YPSEFATYL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENSG00000141551|ENST00000314028|CSNK1D;nc|ENSG00000141551|P48730-2|CSNK1D;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000581108.5_1_17:80207265-80210400:-|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1090.5091537460999	1	1090.50915	1089.50188	2.3644	0.0025784	-0.92175	-0.0010052	1.4427	0.0015733	1090.507676164038	28.363	0.21717	28.363	28.315	28.532	0	114	100	1.5511382	0.05835092	1.5511382	314.5782	0	11.833862						432	10	4	NaN	NaN	NaN	0.014046	1	12363	12363		80.639	44.052	1	84649			32287	13662	18645	19158	25755	25755					-0.03929358404866434
YPSEFATYL	9	Unmodified	_YPSEFATYL_					0	0	0		RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENSG00000141551|ENST00000314028|CSNK1D;nc|ENSG00000141551|P48730-2|CSNK1D;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000581108.5_1_17:80207265-80210400:-|nuORF	RNF213-CSNK1D|2|fusion	RNF213-CSNK1D|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1090.5091537460999	1	1090.50915	1089.50188	1.1165	0.0012176	-0.13087	-0.00014272	0.98563	0.0010748	1090.508551136435	28.387	0.2413	28.378	28.305	28.547	-0.0089779	111	103	1.5529068	0.060141444	1.5513873	314.93686	0	12.19696						557	11	4	NaN	NaN	NaN	0.0023856	1	12057	12057		109.86	65.555	1	89031			32288	13662	18645	19158	25756	25756					-0.03929358404866434
YPSEFSTYL	9	Unmodified	_YPSEFSTYL_					0	0	0		ENSG00000213923|ENST00000396832|CSNK1E;ENST00000442216.1_2_22:38693892-38696026:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF	ENSG00000213923|ENST00000396832|CSNK1E	ENSG00000213923|ENST00000396832|CSNK1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1106.5040683681998	1	1106.50407	1105.49679	1.6306	0.0018043	-0.7222	-0.00079911	0.90841	0.0010052	1106.5043901402864	27.615	0.12061	27.615	27.591	27.712	0	81	91	1.5705823	0.05303228	1.5705823	318.46387	0	10.753235						228	6	3	NaN	NaN	NaN	0.077759	1	13069	13069		52.624	29.29	1	15882			32289	5973	18646	19159	25757	25757					-0.05173662267475265
YPSEFSTYL	9	Unmodified	_YPSEFSTYL_					0	0	0		ENSG00000213923|ENST00000396832|CSNK1E;ENST00000442216.1_2_22:38693892-38696026:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF	ENSG00000213923|ENST00000396832|CSNK1E	ENSG00000213923|ENST00000396832|CSNK1E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1106.5040683681998	1	1106.50407	1105.49679	1.0682	0.001182	0.044566	4.9312E-05	1.1128	0.0012313	1106.5043218413757	27.639	0.14476	27.629	27.605	27.75	-0.009552	84	88	1.5688156	0.051267266	1.5672961	318.10562	0	10.395355						269	7	3	NaN	NaN	NaN	0.064504	1	12720	12720		55.494	23.933	1	19702			32290	5973	18646	19159	25758	25758					-0.05173662267475265
YPSEPESP	8	Unmodified	_YPSEPESP_					0	0	0			REV__SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	REV__SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	905.3887042594	1	905.388704	904.381428	1.718	0.0015555	3.4228	0.003099	5.1409	0.0046545	905.3918352175075	20.309	0.096188	20.309	20.261	20.357	0	417	82	1.3715409	0.048292518	1.3715409	278.86627	0	9.819						167	5	2	NaN	NaN	NaN	0.54545	1	6157	6157		28.667	0	1	17870	+		32291	9318	18647	19160	25759	25759					-0.07458766398474381
YPSEPESP	8	Unmodified						0	0	0			REV__SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	REV__SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	905.388704	904.381428	1.718	0.0015555	3.4228	0.003099	5.1409	0.0046545	905.3918352175075	20.309	0.096188	20.309	20.261	20.357	0	417	82	1.3715409	0.048292518	1.3715409	278.86627		9.819	-0.0049034	0.00034665	-0.00013411	NaN	28.667	167	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17870	+		32292	9318	18647	19160							-0.07458766398474381
YPSEQEKAL	9	Unmodified	_YPSEQEKAL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	532.7665714547	2	532.766571	1063.51859	1.6408	0.00087416	-2.7216	-0.00145	-1.0808	-0.00057582	532.7648348741371	14.861	0.16817	14.861	14.813	14.981	0	1278	58	0.85049206	0.03504312	0.85049206	345.06888	0	14.218018						190	8	2	NaN	NaN	NaN	0.15381	1	11274	11274		28.296	6.4606	1	22115			32293	5078	18648	19161	25760	25760					-0.010628575189002731
YPSEQEKAL	9	Unmodified	_YPSEQEKAL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	532.7665714547	2	532.766571	1063.51859	0.61602	0.0003282	-0.60295	-0.00032123	0.013074	6.9656E-06	532.766147073132	14.884	0.16815	14.872	14.8	14.968	-0.011737	1281	55	0.84864825	0.03319341	0.8471288	344.3208	0	13.467529						179	8	2	NaN	NaN	NaN	0.11323	1	11014	11014		33.907	12.955	1	23016			32294	5078	18648	19161	25761	25761					-0.010628575189002731
YPSEQEKALL	10	Unmodified	_YPSEQEKALL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.3086034449001	2	589.308603	1176.60265	1.9667	0.001159	-1.6099	-0.00094872	0.35686	0.0002103	589.3075626308445	19.06	0.3119	19.06	18.964	19.276	0	1188	64	0.90571284	0.038602352	0.90571284	367.02164	0	15.642853						524	14	3	NaN	NaN	NaN	0.05475	1	15706	15706		52.195	20.519	1	102240			32295	5078	18649	19162	25762	25762					0.0214167357801216
YPSEQEKALL	10	Unmodified	_YPSEQEKALL_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.3086034449001	2	589.308603	1176.60265	1.4982	0.00088288	-1.3762	-0.00081101	0.12194	7.1862E-05	589.3074260208366	19.082	0.28835	19.068	18.972	19.26	-0.014059	1182	76	0.9093879	0.04595518	0.90786844	368.51086	0	18.622406						464	13	2	NaN	NaN	NaN	0.018338	1	15137	15137		64.375	28.852	1	99448			32296	5078	18649	19162	25763	25763					0.0214167357801216
YPSEQEKLSL	10	Unmodified	_YPSEQEKLSL_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.30606075595	2	597.306061	1192.59757	1.5707	0.00093818	-1.6507	-0.00098598	-0.080026	-4.78E-05	597.3052648957259	19.612	0.24009	19.612	19.54	19.78	0	1170	73	0.91673553	0.044095516	0.91673553	371.43063	0	17.866028						485	11	4	NaN	NaN	NaN	0.096025	1	16224	16224		46.512	18.217	1	58690			32297	2191	18650	19163	25764	25764					0.008973697153805915
YPSEQEKLSL	10	Unmodified	_YPSEQEKLSL_					0	0	0		nc|ENSG00000118707|Q9GZN2-2|TGIF2;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	nc|ENSG00000118707|Q9GZN2-2|TGIF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.30606075595	2	597.306061	1192.59757	1.1358	0.0006784	-1.102	-0.00065822	0.033787	2.0181E-05	597.3059518889359	19.635	0.2166	19.621	19.549	19.765	-0.014141	1170	67	0.91673553	0.04041654	0.9152161	371.43063	0	16.375427						390	10	4	NaN	NaN	NaN	0.0020838	1	15609	15609		85.696	46.657	1	51867			32298	2191	18650	19163	25765	25765					0.008973697153805915
YPSESSVL	8	Unmodified	_YPSESSVL_					0	0	0		PPP1R18|p.E561Q|1|0.35|ENSG00000146112|chr6:30679320-30679320|C/G|missense_variant;nc|ENSG00000146112|Q6NYC8-4|PPP1R18;nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	PPP1R18|p.E561Q|1|0.35|ENSG00000146112|chr6:30679320-30679320|C/G|missense_variant	PPP1R18|p.E561Q|1|0.35|ENSG00000146112|chr6:30679320-30679320|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	881.4250897657001	1	881.42509	880.417813	1.5045	0.0013261	2.6471	0.0023332	4.1516	0.0036594	881.4269242330381	21.151	0.12048	21.151	21.127	21.248	0	405	49	1.3786905	0.028594851	1.3786905	280.43427	0	5.8163757						109	6	2	NaN	NaN	NaN	0.14214	1	5805	5805		55.947	5.9148	1	9500.5			32299	3549	18651	19164	25766	25766					-0.027178895017527793
YPSIHPFIL	9	Unmodified	_YPSIHPFIL_					0	0	0		ENSG00000256436|ENST00000390675|TAS2R31;ENSG00000255374|ENST00000531678|TAS2R43	ENSG00000256436|ENST00000390675|TAS2R31	ENSG00000256436|ENST00000390675|TAS2R31	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	543.8027599957501	2	543.80276	1085.59097	1.5923	0.00086591	-4.7321	-0.0025734	-3.1398	-0.0017074	544.3010338383937	22.573	0.096458	22.573	22.525	22.621	0	1167	67	0.91857195	0.040412188	0.91857195	372.59396	0	16.39212						113	5	3	NaN	NaN	NaN	0.62619	1	12210	12210		4.4131	0	1	11565			32300	6124	18652	19165	25767	25767					0.05159521345331086
YPSITINVL	9	Unmodified	_YPSITINVL_					0	0	0		ENSG00000104055|ENST00000220420|TGM5;nc|ENSG00000104055|O43548-2|TGM5	ENSG00000104055|ENST00000220420|TGM5	ENSG00000104055|ENST00000220420|TGM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1019.5771737318001	1	1019.57717	1018.5699	1.9862	0.002025	-1.833	-0.0018689	0.15311	0.00015611	1019.5748083192688	30.873	0.14475	30.873	30.825	30.97	0	150	103	1.5299006	0.060249925	1.5299006	310.54126	0	12.229614						343	7	4	NaN	NaN	NaN	0.0094682	1	9328	9328		93.472	43.639	1	51033			32301	1459	18653	19166	25768	25768					0.061355112458159056
YPSITINVL	9	Unmodified	_YPSITINVL_					0	0	0		ENSG00000104055|ENST00000220420|TGM5;nc|ENSG00000104055|O43548-2|TGM5	ENSG00000104055|ENST00000220420|TGM5	ENSG00000104055|ENST00000220420|TGM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1019.5771737318001	1	1019.57717	1018.5699	1.5612	0.0015918	-2.0856	-0.0021265	-0.52441	-0.00053468	1019.5748486787511	30.872	0.19312	30.866	30.818	31.011	-0.0057545	150	103	1.5299006	0.060249925	1.5283811	310.5413	0	12.229614						338	9	3	NaN	NaN	NaN	0.02857	1	9137	9137		60.982	28.529	1	49779			32302	1459	18653	19166	25769	25769					0.061355112458159056
YPSKQFDVL	9	Unmodified	_YPSKQFDVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	548.7873068968	2	548.787307	1095.56006	1.7483	0.00095946	-2.8959	-0.0015893	-1.1476	-0.0006298	548.7867027267083	21.898	0.36116	21.884	21.691	22.053	-0.013895	1239	100	0.87444305	0.06077242	0.8729236	354.6538	0	24.647858						828	16	5	NaN	NaN	NaN	0.024359	1	12327	12327		66.481	22.179	1	283000			32303	2532	18654	19167	25770	25770					0.016103232404248047
YPSLREAAL	9	Unmodified	_YPSLREAAL_					0	0	0		ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	ENSG00000147381|ENST00000276344|MAGEA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	510.2796490401999	2	510.279649	1018.54475	0.89071	0.00045451	-1.1699	-0.00059696	-0.27916	-0.00014245	510.27904053756305	20.887	0.36117	20.873	20.704	21.065	-0.014088	1305	58	0.83389086	0.035062134	0.8323714	338.52423	0	14.233734						440	16	3	NaN	NaN	NaN	0.12104	1	9133	9133		32.778	6.6631	1	92956			32304	162	18655	19168	25771	25771					0.036214564432157204
YPSLYEEVL	9	Unmodified	_YPSLYEEVL_					0	0	0		ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000267978|ENST00000595065|MAGEA9B	ENSG00000123584|ENST00000243314|MAGEA9	ENSG00000123584|ENST00000243314|MAGEA9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1112.5510185608	1	1112.55102	1111.54374	0.93441	0.0010396	-0.069452	-7.7268E-05	0.86496	0.00096231	1112.5511339963566	29.521	0.19304	29.514	29.417	29.61	-0.0070648	90	70	1.5652816	0.040638685	1.5637622	317.36777	0	8.239655						249	9	2	NaN	NaN	NaN	0.074859	1	12961	12961		39.459	18.903	1	25291			32305	2383	18656	19169	25772	25772					-0.007568027163188162
YPSMSDPYL	9	Unmodified	_YPSMSDPYL_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.4655743719	1	1072.46557	1071.4583	2.1822	0.0023403	1.5948	0.0017103	3.777	0.0040507	1072.4697799445025	25.998	0.072395	25.998	25.95	26.022	0	132	85	1.5405227	0.049570203	1.5405227	312.49112	0	10.055176						199	4	3	NaN	NaN	NaN	0.021105	1	11612	11612		70.6	39.039	1	23983			32306	3692	18657	19170	25773	25773					-0.07457291173636804
YPSMSDPYL	9	Unmodified	_YPSMSDPYL_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.4655743719	1	1072.46557	1071.4583	2.1324	0.0022869	0.34934	0.00037465	2.4817	0.0026615	1072.46537684414	25.998	0.096544	25.987	25.938	26.035	-0.011137	132	82	1.5405227	0.047797322	1.5390033	312.49112	0	9.695587						200	5	3	NaN	NaN	NaN	0.0023856	1	11312	11312		109.86	76.159	1	23614			32307	3692	18657	19170	25774	25774					-0.07457291173636804
YPSNAVEEV	9	Unmodified	_YPSNAVEEV_					0	0	0		ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1007.4680172129	1	1007.46802	1006.46074	1.7712	0.0017844	-0.97119	-0.00097844	0.79998	0.00080595	1007.4674670065815	19.42	0.11997	19.42	19.372	19.492	0	315	49	1.4322147	0.028497696	1.4322147	290.75958	0	5.7854614						119	6	3	NaN	NaN	NaN	0.024221	1	8830	8830		66.656	25.196	1	7383.3			32308	608	18658	19171	25775	25775					-0.042231194443274944
YPSNAVEEV	9	Unmodified	_YPSNAVEEV_					0	0	0		ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	ENST00000468472.1_1_3:52853923-52864679:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1007.4680172129	1	1007.46802	1006.46074	1.8404	0.0018541	-1.5387	-0.0015502	0.30167	0.00030393	1007.466482344135	19.418	0.096165	19.404	19.38	19.476	-0.014141	318	76	1.4304334	0.04450643	1.428914	290.39795	0	9.0354						113	5	2	NaN	NaN	NaN	0.034172	1	8663	8663		53.652	23.041	1	8290.3			32309	608	18658	19171	25776	25776					-0.042231194443274944
YPSNVFDGL	9	Unmodified	_YPSNVFDGL_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68845982-68853340:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4781879687001	1	1011.47819	1010.47091	1.9907	0.0020135	-1.8976	-0.0019194	0.093054	9.4122E-05	1011.4785926640044	28.074	0.12064	28.074	28.026	28.146	0	240	118	1.4766881	0.06928277	1.4766881	299.77222	0	14.064606						304	6	3	NaN	NaN	NaN	0.057383	1	8992	8992		43.776	20.658	1	35972			32310	4125	18659	19172	25777	25777					-0.03390511719089773
YPSNVFDGL	9	Unmodified	_YPSNVFDGL_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2;ENST00000442692.2_1_11:68845982-68853340:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1011.4781879687001	1	1011.47819	1010.47091	1.3652	0.0013808	-0.86481	-0.00087473	0.50036	0.00050611	1011.4778331069889	28.073	0.21724	28.064	28.016	28.233	-0.0089779	234	121	1.4802408	0.07105553	1.4787214	300.49344	0	14.424469						352	10	3	NaN	NaN	NaN	0.013696	1	8816	8816		81.699	44.397	1	38431			32311	4125	18659	19172	25778	25778					-0.03390511719089773
YPSPFFVF	8	Unmodified	_YPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1003.4923814699001	1	1003.49238	1002.48511	1.6651	0.0016709	-0.21533	-0.00021609	1.4498	0.0014548	1003.4916721699425	36.157	0.21704	36.157	36.109	36.326	0	201	94	1.4997677	0.055012465	1.4997677	304.49008	0	11.168915						430	10	3	NaN	NaN	NaN	0.12449	1	8689	8689		59.445	24.149	1	67392			32312	2966	18660	19173	25779	25779					-0.01603814500140288
YPSPFFVF	8	Unmodified	_YPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1003.4923814699001	1	1003.49238	1002.48511	1.6647	0.0016705	0.37715	0.00037847	2.0418	0.002049	1003.4925967413143	36.155	0.21693	36.157	36.084	36.301	0.0011024	198	70	1.5015416	0.0408113	1.5000222	304.85025	0	8.285736						396	10	3	NaN	NaN	NaN	0.10499	1	8516	8516		63.31	27.274	1	64023			32313	2966	18660	19173	25780	25780					-0.01603814500140288
YPSPWPEKF	9	Unmodified	_YPSPWPEKF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.78202455365	2	575.782025	1149.5495	1.5087	0.00086869	-11.353	-0.0065368	-9.8443	-0.0056682	575.7744021792687	24.092	0.14473	24.092	23.971	24.116	0	1230	64	0.8799654	0.038656652	0.8799654	356.6853	0	15.669067						168	7	2	NaN	NaN	NaN	0.37272	1	14779	14779		14.854	4.4938	1	25723			32314	1944	18661	19174	25781	25781					-0.01929659414008711
YPSQDNDRL	9	Unmodified	_YPSQDNDRL_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	554.2569022254	2	554.256902	1106.49925	1.0191	0.00056482	3.5535	0.0019695	4.5725	0.0025343	554.2596114413456	14.645	0.21611	14.645	14.573	14.789	0	1269	49	0.8560222	0.029492497	0.8560222	347.14008	0	11.959991						205	10	2	NaN	NaN	NaN	0.38313	1	13119	13119		14.425	1.8371	1	31471			32315	3546	18662	19175	25782	25782					-0.049738138098064155
YPSSEIQL	8	Unmodified	_YPSSEIQL_					0	0	0		nc|ENSG00000115145|O75886-2|STAM2;ENST00000463854.5_1_2:152988626-153032156:-|nuORF;ENST00000482997.5_1_2:152982712-153032156:-|nuORF;ENSG00000115145|ENST00000263904|STAM2	nc|ENSG00000115145|O75886-2|STAM2	nc|ENSG00000115145|O75886-2|STAM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	936.4672889314	1	936.467289	935.460012	1.807	0.0016922	-0.79597	-0.0007454	1.011	0.00094679	936.4664273712984	23.682	0.26505	23.682	23.61	23.875	0	339	100	1.4179583	0.058879852	1.4179583	288.1604	0	11.965698						443	12	3	NaN	NaN	NaN	0.3042	1	6733	6733		41.785	16.823	1	52012			32316	1992	18663	19176	25783	25783					-0.010299140933739181
YPSSEIQL	8	Unmodified						0	0	0		nc|ENSG00000115145|O75886-2|STAM2;ENST00000463854.5_1_2:152988626-153032156:-|nuORF;ENST00000482997.5_1_2:152982712-153032156:-|nuORF;ENSG00000115145|ENST00000263904|STAM2	nc|ENSG00000115145|O75886-2|STAM2	nc|ENSG00000115145|O75886-2|STAM2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	936.467289	935.460012	2.1199	0.0019852	-0.93656	-0.00087706	1.1833	0.0011081	936.4662698131926	23.682	0.26509	23.669	23.572	23.837	-0.013048	339	106	1.4179583	0.062428355	1.4164388	288.1604		12.686859	-0.0066698	-5.7807E-05	-0.00075972	NaN	41.785	439	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51991			32317	1992	18663	19176							-0.010299140933739181
YPSSGLSFL	9	Unmodified	_YPSSGLSFL_					0	0	0			REV__nc|ENSG00000157404|P10721-4|KIT	REV__nc|ENSG00000157404|P10721-4|KIT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	970.4880243735	1	970.488024	969.480748	1.0918	0.0010596	-8.599	-0.0083453	-7.5072	-0.0072857	970.479309048488	27.47	0.16894	27.46	27.436	27.605	-0.0095501	291	106	1.446459	0.062262774	1.4449396	293.80273	0	12.6467285						358	8	2	NaN	NaN	NaN	0.23112	1	7438	7438		23.334	0	1	48064	+		32318	10148	18664	19177	25784	25784					-0.00521323713712718
YPSVQQHYL	9	Unmodified	_YPSVQQHYL_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7825558699001	2	567.782556	1133.55056	2.1601	0.0012264	-4.1261	-0.0023428	-1.9661	-0.0011163	567.7799075152236	25.539	0.31364	25.528	25.359	25.672	-0.0116	1215	82	0.8891654	0.049669147	0.88764596	360.4747	0	20.136261						540	14	3	NaN	NaN	NaN	0.41766	1	13768	13768		13.003	0	1	269700	+		32319	11003	18665	19178	25785	25785					-0.01087445045095592
YPSVQQHYL	9	Unmodified						0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	567.782556	1133.55056	2.2976	0.0013045	-3.0675	-0.0017416	-0.76986	-0.00043711	568.2823952493078	25.926	0.14478	25.926	25.853	25.998	0	1203	61	0.8965218	0.03678602	0.8965218	363.45703		14.91333	0.19895	0.00092085	0.0044379	NaN	13.003	216	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47747	+		32320	11003	18665	19178							-0.01087445045095592
YPSVQQHYL	9	Unmodified						0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	567.782556	1133.55056	2.1601	0.0012264	-4.1261	-0.0023428	-1.9661	-0.0011163	567.7799075152236	25.539	0.31364	25.528	25.359	25.672	-0.0116	1215	82	0.8891654	0.049669147	0.88764596	360.4747		20.136261	-0.19895	-0.00028135	-0.0044379	NaN	13.003	540	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269700	+		32321	11003	18665	19178							-0.01087445045095592
YPTDSYGVL	9	Unmodified	_YPTDSYGVL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-7|TRPM1;nc|ENSG00000134160|Q7Z4N2-4|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-7|TRPM1	nc|ENSG00000134160|Q7Z4N2-7|TRPM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1014.4778536177001	1	1014.47785	1013.47058	1.2647	0.001283	7.7917	0.0079045	9.0564	0.0091876	1014.4854810838068	31.477	0.16895	31.477	31.477	31.646	0	228	70	1.4837929	0.040828705	1.4837929	301.20248	0	8.288025						197	8	2	NaN	NaN	NaN	0.3389	1	9115	9115		16.417	2.6796	1	17357			32322	2852	18666	19179	25786	25786					-0.03561931438935062
YPTEDYKV	8	Unmodified	_YPTEDYKV_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.74256504215	2	507.742565	1013.47058	1.9194	0.00097458	-4.1296	-0.0020968	-2.2102	-0.0011222	508.2410276051873	17.093	0.19209	17.093	17.021	17.213	0	1326	55	0.8209676	0.033247292	0.8209676	333.3002	0	13.497894						168	9	3	NaN	NaN	NaN	0.42133	1	9111	9111		35.296	20.121	1	14467			32323	4550	18667	19180	25787	25787					-0.03561931438946431
YPTEDYKV	8	Unmodified	_YPTEDYKV_					0	0	0		ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF	ENSG00000167515|ENST00000696289|TRAPPC2L	ENSG00000167515|ENST00000696289|TRAPPC2L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.74256504215	2	507.742565	1013.47058	1.4995	0.00076135	-0.60648	-0.00030793	0.89299	0.00045341	507.74263684444253	17.09	0.21599	17.077	17.029	17.245	-0.013294	1329	49	0.81912065	0.029549956	0.8176012	332.55035	0	11.996857						172	10	3	NaN	NaN	NaN	0.63486	1	8934	8934		23.118	7.9422	1	16646			32324	4550	18667	19180	25788	25788					-0.03561931438946431
YPTEEEEQAL	10	Unmodified	_YPTEEEEQAL_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.76950807415	2	604.769508	1207.52446	1.4907	0.00090151	-1.5181	-0.0009181	-0.02743	-1.6589E-05	604.7690634537641	19.997	0.14425	19.997	19.924	20.069	0	1152	49	0.92775106	0.029365301	0.92775106	375.8406	0	11.896149						88	7	2	NaN	NaN	NaN	0.64158	1	16665	16665		12.049	0.87837	1	7053.2			32325	2979	18668	19181	25789	25789					-0.07099803797882487
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	507.78456724259996	2	507.784567	1013.55458	1.844	0.00093634	-1.414	-0.00071802	0.42995	0.00021832	507.7837450698081	24.888	0.24133	24.888	24.743	24.985	0	1257	67	0.86339295	0.040543437	0.86339295	350.5238	0	16.459991						440	11	4	NaN	NaN	NaN	0.056143	1	9134	9134		44.302	29.127	1	87730			32326	820	18669	19182	25790	25790					0.04834644448601466
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	507.78456724259996	2	507.784567	1013.55458	1.2802	0.00065007	-0.97589	-0.00049554	0.30431	0.00015452	507.7838279224606	24.888	0.28949	24.875	24.731	25.02	-0.012394	1257	70	0.86339295	0.042388618	0.8618735	350.5238	0	17.209106						439	13	4	NaN	NaN	NaN	0.014943	1	8958	8958		78.398	50.609	1	79858			32327	820	18669	19182	25791	25791					0.04834644448601466
YPTLMEPVL	9	Unmodified	_YPTLMEPVL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1062.5539954486999	1	1062.554	1061.54672	1.2433	0.001321	3.8629	0.0041045	5.1061	0.0054255	1062.5576295647409	30.97	0.19304	30.97	30.825	31.018	0	147	76	1.5316714	0.044252038	1.5316714	310.7325	0	8.977478						219	9	2	NaN	NaN	NaN	0.023828	1	11185	11185		67.154	37.556	1	22237			32328	5631	18670	19183	25792	25792					0.018407491368179763
YPTLMEPVL	9	Unmodified	_YPTLMEPVL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1062.5539954486999	1	1062.554	1061.54672	1.2265	0.0013032	3.3594	0.0035695	4.5859	0.0048727	1062.5581830764893	30.945	0.14484	30.94	30.843	30.988	-0.0050716	138	85	1.5369828	0.049575567	1.5354633	311.81006	0	10.057465						199	7	2	NaN	NaN	NaN	0.27442	1	10932	10932		20.555	7.5526	1	20115			32329	5631	18670	19183	25793	25793					0.018407491368179763
YPTNSDFEL	9	Unmodified	_YPTNSDFEL_					0	0	0		ENST00000374308.1_1_9:114355204-114361641:-|nuORF;ENST00000374313.5_1_9:114355204-114361983:-|nuORF;nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	ENST00000374308.1_1_9:114355204-114361641:-|nuORF	ENST00000374308.1_1_9:114355204-114361641:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1085.4785818992	1	1085.47858	1084.47131	2.089	0.0022675	0.10936	0.0001187	2.1983	0.0023862	1086.4814526140974	25.419	0.33773	25.419	25.298	25.636	0	171	79	1.5174994	0.04606366	1.5174994	307.77393	0	9.342468						437	15	3	NaN	NaN	NaN	0.030545	1	12147	12147		58.398	23.101	1	44353			32330	1621	18671	19184	25794	25794					-0.06755136789888638
YPTNSDFEL	9	Unmodified	_YPTNSDFEL_					0	0	0		ENST00000374308.1_1_9:114355204-114361641:-|nuORF;ENST00000374313.5_1_9:114355204-114361983:-|nuORF;nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	ENST00000374308.1_1_9:114355204-114361641:-|nuORF	ENST00000374308.1_1_9:114355204-114361641:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.4785818992	1	1085.47858	1084.47131	1.9223	0.0020867	0.76947	0.00083525	2.6918	0.0029219	1085.4790412969749	25.467	0.33777	25.455	25.31	25.648	-0.012011	168	94	1.5192716	0.054925084	1.5177522	308.13336	0	11.139709						591	15	3	NaN	NaN	NaN	0.0014219	1	11831	11831		112.76	67.596	1	67064			32331	1621	18671	19184	25795	25795					-0.06755136789888638
YPTPSDFGL	9	Unmodified	_YPTPSDFGL_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	996.4672889314	1	996.467289	995.460012	2.3612	0.0023528	-0.47098	-0.00046931	1.8902	0.0018835	996.466852448494	28.653	0.36201	28.653	28.46	28.822	0	261	154	1.4642475	0.09065831	1.4642475	297.30707	0	18.407684						1173	16	4	NaN	NaN	NaN	0.011942	1	8398	8398		87.021	33.697	1	378800			32332	5551	18672	19185	25796	25796					-0.03789914093374591
YPTPSDFGL	9	Unmodified	_YPTPSDFGL_					0	0	0		ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	996.4672889314	1	996.467289	995.460012	1.8666	0.00186	0.036608	3.6479E-05	1.9032	0.0018965	996.4676378757445	28.628	0.31366	28.62	28.451	28.765	-0.0083504	261	178	1.4642475	0.10491276	1.462728	297.30707	0	21.30194						1113	14	5	NaN	NaN	NaN	3.2142E-07	1	8232	8232		129.63	76.304	1	363670			32333	5551	18672	19185	25797	25797					-0.03789914093374591
YPTPYPEDL	9	Unmodified	_YPTPYPEDL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1094.5040683681998	1	1094.50407	1093.49679	2.1483	0.0023513	-0.018606	-2.0364E-05	2.1297	0.0023309	1094.5046792844175	24.96	0.21718	24.96	24.888	25.105	0	105	115	1.5564433	0.06723118	1.5564433	315.63965	0	13.634186						648	10	4	NaN	NaN	NaN	3.2142E-07	1	12529	12529		129.63	5.9701	1	87638			32334	498	18673	19186	25798	25798					-0.04621662267481952
YPTPYPEDL	9	Unmodified	_YPTPYPEDL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1094.5040683681998	1	1094.50407	1093.49679	1.7072	0.0018685	0.5906	0.00064641	2.2978	0.0025149	1094.5046086970772	24.96	0.24127	24.948	24.851	25.093	-0.012394	102	121	1.5582114	0.07077718	1.556692	315.9982	0	14.353302						550	11	3	NaN	NaN	NaN	0.01047	1	12211	12211		91.429	4.4078	1	76815			32335	498	18673	19186	25799	25799					-0.04621662267481952
YPTQGYEQYE	10	Unmodified	_YPTQGYEQYE_					0	0	0			REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.26967524965	2	639.269675	1276.5248	1.6375	0.0010468	3.8036	0.0024315	5.4411	0.0034783	639.2729393635622	24.743	0.14478	24.743	24.695	24.84	0	1173	79	0.91489893	0.047718644	0.91489893	370.4076	0	19.319458						293	7	3	NaN	NaN	NaN	0.66626	1	18348	18348		10.36	1.3982	1	25652	+		32336	12151	18674	19187	25800	25800					-0.10240384078042553
YPTQGYEQYE	10	Unmodified						0	0	0			REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	639.269675	1276.5248	1.6375	0.0010468	3.8036	0.0024315	5.4411	0.0034783	639.2729393635622	24.743	0.14478	24.743	24.695	24.84	0	1173	79	0.91489893	0.047718644	0.91489893	370.4076		19.319458	0.0062585	0.00061932	0.00075972	NaN	10.36	293	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25652	+		32337	12151	18674	19187							-0.10240384078042553
YPTTTISYL	9	Unmodified	_YPTTTISYL_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5404538745	1	1058.54045	1057.53318	1.8205	0.0019271	-1.027	-0.0010872	0.79351	0.00083997	1058.5398606411513	26.336	0.12064	26.324	26.276	26.397	-0.011137	111	61	1.5529068	0.035369754	1.5513873	315.05594	0	7.175873						165	6	3	NaN	NaN	NaN	0.030391	1	10762	10762		58.599	22.013	1	16325			32338	4774	18675	19188	25801	25801					0.006712146292329635
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	498.23764683974997	2	498.237647	994.460741	1.5238	0.00075923	-2.2786	-0.0011353	-0.75479	-0.00037607	498.2368836147442	21.103	0.19269	21.103	21.079	21.272	0	1329	61	0.81912065	0.036937475	0.81912065	332.6355	0	14.999878						254	9	4	NaN	NaN	NaN	0.021105	1	8362	8362		70.6	33.297	1	52507			32339	4581	18676	19189	25802	25802					-0.03671119444334181
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	995.4680172129	1	995.468017	994.460741	1.8493	0.0018409	-0.28084	-0.00027957	1.5684	0.0015613	995.4677917751081	21.103	0.16863	21.103	21.079	21.248	0	258	73	1.4660252	0.042669535	1.4660252	297.67212	0	8.66391						317	8	4	NaN	NaN	NaN	1.1649E-05	1	8366	8366		128.29	70.059	1	54687			32340	4581	18676	19189	25803	25803					-0.03671119444334181
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.23764683974997	2	498.237647	994.460741	0.90357	0.00045019	-1.596	-0.00079518	-0.69241	-0.00034499	498.2367659267669	21.103	0.21667	21.089	21.065	21.282	-0.014004	1329	52	0.81912065	0.031398535	0.8176012	332.6355	0	12.75058						245	10	4	NaN	NaN	NaN	0.036546	1	8197	8197		52.624	29.506	1	50852			32341	4581	18676	19189	25804	25804					-0.03671119444334181
YPTVDSNSL	9	Unmodified	_YPTVDSNSL_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	995.4680172129	1	995.468017	994.460741	1.4325	0.001426	-0.087554	-8.7157E-05	1.345	0.0013389	995.4673317779274	21.103	0.16855	21.089	21.065	21.234	-0.014004	255	103	1.4678029	0.060474157	1.4662834	298.03305	0	12.279083						335	8	4	NaN	NaN	NaN	5.6786E-26	1	8200	8200		173.08	99.944	1	57801			32342	4581	18676	19189	25805	25805					-0.03671119444334181
YPTVGDVAL	9	Unmodified	_YPTVGDVAL_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.4880243735	1	934.488024	933.480748	2.2104	0.0020656	5.8746	0.0054897	8.085	0.0075553	934.4956480412754	26.288	0.1448	26.288	26.239	26.384	0	333	145	1.4215236	0.08548427	1.4215236	288.8938	0	17.372803						356	7	2	NaN	NaN	NaN	0.016254	1	6692	6692		76.739	37.28	1	54736			32343	1332	18677	19190	25806	25806					0.011346762862785909
YPTVGDVAL	9	Unmodified	_YPTVGDVAL_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.4880243735	1	934.488024	933.480748	1.8941	0.00177	1.5388	0.001438	3.4329	0.003208	934.4896172519394	26.287	0.193	26.276	26.228	26.421	-0.011137	330	124	1.4233059	0.07298279	1.4217864	289.25604	0	14.832184						348	9	3	NaN	NaN	NaN	0.014046	1	6543	6543		80.639	48.186	1	43584			32344	1332	18677	19190	25807	25807					0.011346762862785909
YPVDLGDKF	9	Unmodified	_YPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	527.26620731395	2	527.266207	1052.51786	2.2171	0.001169	-2.1052	-0.00111	0.11188	5.8992E-05	527.2653034480522	22.887	0.38555	22.887	22.766	23.152	0	1269	61	0.8560222	0.036869586	0.8560222	347.359	0	14.96106						472	17	3	NaN	NaN	NaN	0.0098181	1	10734	10734		92.758	53.299	1	276160			32345	4267	18678	19191	25808	25808					-0.006296521679814759
YPVDLGDKF	9	Unmodified	_YPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.26620731395	2	527.266207	1052.51786	1.6533	0.00087175	-1.3039	-0.00068751	0.34944	0.00018425	527.2656944963887	22.91	0.2892	22.896	22.776	23.065	-0.01354	1269	49	0.8560222	0.029495716	0.85450274	347.359	0	11.968842						418	13	3	NaN	NaN	NaN	0.015447	1	10512	10512		77.761	33.122	1	277370			32346	4267	18678	19191	25809	25809					-0.006296521679814759
YPVEDFEA	8	Unmodified	_YPVEDFEA_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;ENSG00000075539|ENST00000358350|FRYL	ENSG00000073910|ENST00000542859|FRY;ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	969.4200043878	1	969.420004	968.412728	2.1404	0.002075	-0.56839	-0.00055101	1.572	0.001524	969.4194038220096	22.935	0.12039	22.935	22.911	23.031	0	321	85	1.4286518	0.049902916	1.4286518	290.1902	0	10.136353						180	6	3	NaN	NaN	NaN	0.028839	1	7554	7554		87.795	51.758	1	16055			32347	817;838	18679	19192	25810	25810					-0.07274193364378334
YPVEDFEA	8	Unmodified	_YPVEDFEA_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;ENSG00000075539|ENST00000358350|FRYL	ENSG00000073910|ENST00000542859|FRY;ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	969.4200043878	1	969.420004	968.412728	1.4482	0.0014039	-0.14586	-0.0001414	1.3023	0.0012625	969.4202827815952	22.982	0.14465	22.969	22.896	23.041	-0.01354	321	67	1.4286518	0.039209366	1.4271324	290.1902	0	7.9642944						160	7	2	NaN	NaN	NaN	0.23746	1	7407	7407		47.04	27.755	1	15194			32348	817;838	18679	19192	25811	25811					-0.07274193364378334
YPVEDFEASF	10	Unmodified	_YPVEDFEASF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2638615902499	2	602.263862	1202.51317	1.3478	0.00081172	-0.33337	-0.00020078	1.0144	0.00061094	602.2631446901387	28.484	0.14484	28.484	28.46	28.605	0	1215	52	0.8891654	0.031263053	0.8891654	360.22614	0	12.665558						130	7	3	NaN	NaN	NaN	0.25724	1	16536	16536		30.61	12.811	1	14335			32349	838	18680	19193	25812	25812					-0.07998581101401214
YPVEDYLDL	9	Unmodified	_YPVEDYLDL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1126.5302831186998	1	1126.53028	1125.52301	2.2707	0.002558	-1.1341	-0.0012776	1.1366	0.0012804	1126.529056916941	30.222	0.14479	30.222	30.101	30.246	0	60	67	1.582944	0.038849115	1.582944	320.9	0	7.875641						155	7	2	NaN	NaN	NaN	0.030669	1	13894	13894		58.235	29.34	1	21452			32350	5244	18681	19194	25813	25813					-0.034733930960101134
YPVEDYLDL	9	Unmodified	_YPVEDYLDL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1126.5302831186998	1	1126.53028	1125.52301	0.90302	0.0010173	0.27785	0.000313	1.1809	0.0013303	1126.5305703351255	30.197	0.12066	30.19	30.166	30.287	-0.0064106	60	67	1.582944	0.038845062	1.5814246	320.9	0	7.874817						193	6	3	NaN	NaN	NaN	0.094712	1	13468	13468		36.586	8.7976	1	20879			32351	5244	18681	19194	25814	25814					-0.034733930960101134
YPVEDYLDLF	10	Unmodified	_YPVEDYLDLF_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.3029867507499	2	637.302987	1272.59142	1.1457	0.00073015	-3.1975	-0.0020377	-2.0518	-0.0013076	637.3007788913791	35.603	0.16882	35.603	35.554	35.723	0	1146	52	0.93142134	0.031195581	0.93142134	377.1094	0	12.63031						265	8	4	NaN	NaN	NaN	0.025854	1	18271	18271		61.271	31.673	1	35119			32352	5244	18682	19195	25815	25815					-0.03397148516160087
YPVEDYLDLF	10	Unmodified	_YPVEDYLDLF_					0	0	0		ENSG00000182022|ENST00000435907|CHST15;nc|ENSG00000182022|Q7LFX5-2|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	637.3029867507499	2	637.302987	1272.59142	0.974	0.00062074	-1.2233	-0.0007796	-0.24927	-0.00015886	637.3024229869665	35.601	0.2412	35.602	35.505	35.746	0.00053024	1143	43	0.9332562	0.025686324	0.93173677	377.8523	0	10.39975						235	11	4	NaN	NaN	NaN	0.2358	1	17459	17459		32.453	16.631	1	32022			32353	5244	18682	19195	25816	25816					-0.03397148516160087
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.27710635125	2	566.277106	1130.53966	1.8788	0.0010639	0.73636	0.00041698	2.6152	0.0014809	566.277994604705	15.582	0.21613	15.582	15.51	15.726	0	1251	46	0.8670771	0.027626812	0.8670771	351.53113	0	11.20047						245	10	4	NaN	NaN	NaN	0.3106	1	14096	14096		18.233	3.0581	1	25078			32354	4392	18683	19196	25817	25817					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	377.8538297230333	3	377.85383	1130.53966	1.8544	0.0007007	-0.034453	-1.3018E-05	1.82	0.00068768	377.8530907643656	15.604	0.11987	15.592	15.544	15.664	-0.012201	1446	43	0.7469324	0.025971413	0.74541295	454.22812	0	15.793854						157	6	3	NaN	NaN	NaN	0.1507	1	13640	13640		20.936	9.3749	1	21174			32355	4392	18683	19196	25818	25818					-0.020388474193850925
YPVEHPDKF	9	Unmodified	_YPVEHPDKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.27710635125	2	566.277106	1130.53966	1.6448	0.00093141	0.62356	0.00035311	2.2683	0.0012845	566.2780942839321	15.604	0.1679	15.592	15.544	15.712	-0.012201	1251	55	0.8670771	0.0331468	0.8655577	351.53113	0	13.438385						216	8	3	NaN	NaN	NaN	0.061945	1	13641	13641		41.839	18.721	1	24723			32356	4392	18683	19196	25819	25819					-0.020388474193850925
YPVEIHEYL	9	Unmodified	_YPVEIHEYL_					0	0	0		ENST00000485709.1_1_2:68273401-68290109:-|nuORF;ENSG00000197223|ENST00000410067|C1D	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7925892399501	2	581.792589	1161.57063	2.4063	0.0014	-1.1329	-0.00065913	1.2734	0.00074085	581.7919498118309	23.899	0.28934	23.899	23.827	24.116	0	1203	94	0.8965218	0.056996763	0.8965218	363.35165	0	23.10025						680	13	4	NaN	NaN	NaN	0.0021374	1	15205	15205		143.5	78.95	1	726250			32357	5690	18684	19197	25820	25820					-0.003696941051430258
YPVEIHEYL	9	Unmodified	_YPVEIHEYL_					0	0	0		ENST00000485709.1_1_2:68273401-68290109:-|nuORF;ENSG00000197223|ENST00000410067|C1D	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	ENST00000485709.1_1_2:68273401-68290109:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	581.7925892399501	2	581.792589	1161.57063	2.4135	0.0014041	-0.74913	-0.00043584	1.6643	0.0009683	581.791926986983	23.923	0.28938	23.91	23.813	24.103	-0.013048	1200	94	0.89836043	0.056996763	0.896841	364.0968	0	23.10022						726	13	4	NaN	NaN	NaN	0.0042638	1	14688	14688		136.23	61.899	1	723380			32358	5690	18684	19197	25821	25821					-0.003696941051430258
YPVEVELKL	9	Unmodified	_YPVEVELKL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	545.31315750655	2	545.313158	1088.61176	1.9248	0.0010496	-3.2314	-0.0017621	-1.3066	-0.00071251	545.3125608047976	25.926	0.14482	25.926	25.901	26.046	0	1233	88	0.87812483	0.053382993	0.87812483	356.1753	0	21.652588						263	7	2	NaN	NaN	NaN	0.030696	1	12345	12345		58.2	2.7865	1	33080			32359	431	18685	19198	25822	25822					0.07100066934322058
YPVEVELKL	9	Unmodified	_YPVEVELKL_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	545.31315750655	2	545.313158	1088.61176	2.1203	0.0011562	-3.1011	-0.0016911	-0.9808	-0.00053485	545.3128940076471	25.949	0.16893	25.938	25.89	26.059	-0.0116	1227	79	0.88180584	0.047858	0.8802864	357.66833	0	19.411621						280	8	2	NaN	NaN	NaN	0.026443	1	12036	12036		63.765	21.447	1	29582			32360	431	18685	19198	25823	25823					0.07100066934322058
YPVHLAAQ	8	Unmodified	_YPVHLAAQ_					0	0	0			REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF	REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.7427024278999	2	449.742702	897.470852	1.0984	0.00049402	-4.8568	-0.0021843	-3.7584	-0.0016903	449.741151117051	27.229	0.096502	27.229	27.181	27.277	0	1371	25	0.79324204	0.014798999	0.79324204	322.601	0	6.0185547						43	5	2	NaN	NaN	NaN	0.84876	1	6023	6023		0.39566	0	1	2500.3	+		32361	11283	18686	19199	25824	25824					0.018015330715456912
YPVKEQESI	9	Unmodified	_YPVKEQESI_					0	0	0		ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	546.7822215189001	2	546.782222	1091.54989	1.4807	0.00080963	-2.2736	-0.0012432	-0.79289	-0.00043354	546.7807459972893	15.87	0.19183	15.87	15.822	16.014	0	1248	37	0.8689189	0.022102654	0.8689189	352.4294	0	8.964722						124	9	2	NaN	NaN	NaN	0.27507	1	12469	12469		20.513	2.5436	1	12441			32362	1988	18687	19200	25825	25825					0.007777155151870829
YPVKEQESI	9	Unmodified	_YPVKEQESI_					0	0	0		ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF;ENSG00000115084|ENST00000245680|SLC35F5	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7822215189001	2	546.782222	1091.54989	2.0428	0.0011169	-1.8805	-0.0010282	0.16226	8.8723E-05	546.7811396694942	15.868	0.2155	15.855	15.759	15.975	-0.012611	1251	43	0.8670771	0.0257864	0.8655577	351.68237	0	10.458832						167	10	3	NaN	NaN	NaN	0.041983	1	12153	12153		50.315	15.019	1	15667			32363	1988	18687	19200	25826	25826					0.007777155151870829
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	573.7951319289	2	573.795132	1145.57571	1.8543	0.001064	-2.3033	-0.0013216	-0.44901	-0.00025764	573.7941664100127	19.396	0.19198	19.396	19.372	19.564	0	1224	76	0.883646	0.045980036	0.883646	358.1919	0	18.638336						411	9	4	NaN	NaN	NaN	0.0021374	1	14645	14645		110.61	65.967	1	79923			32364	1871	18688	19201	25827	25827					0.008746097574658052
YPVKYTQTF	9	Unmodified	_YPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	573.7951319289	2	573.795132	1145.57571	1.3769	0.00079006	-3.202	-0.0018373	-1.8251	-0.0010472	573.7943466843708	19.418	0.21641	19.404	19.308	19.524	-0.014141	1221	70	0.885486	0.042310774	0.88396657	358.93774	0	17.15097						431	10	4	NaN	NaN	NaN	0.00015011	1	14161	14161		119.86	67.079	1	76435			32365	1871	18688	19201	25828	25828					0.008746097574658052
YPVNSVNIL	9	Unmodified	_YPVNSVNIL_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENSG00000120438|ENST00000321394|TCP1	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1018.5567726407002	1	1018.55677	1017.5495	2.1255	0.002165	-0.36085	-0.00036754	1.7647	0.0017974	1018.5560453051573	26.867	0.14477	26.867	26.843	26.988	0	177	58	1.5139546	0.033678055	1.5139546	307.30865	0	6.83609						216	7	3	NaN	NaN	NaN	0.017558	1	9282	9282		75.089	34.935	1	23222			32366	2260	18689	19202	25829	25829					0.04142340586008686
YPVNSVNIL	9	Unmodified	_YPVNSVNIL_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF;ENSG00000120438|ENST00000321394|TCP1	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5567726407002	1	1018.55677	1017.5495	1.5389	0.0015675	-0.34288	-0.00034924	1.196	0.0012182	1018.5571136735322	26.915	0.16896	26.904	26.832	27.001	-0.010645	177	58	1.5139546	0.033678055	1.5124352	307.30865	0	6.83609						194	8	2	NaN	NaN	NaN	0.048656	1	9103	9103		47.482	15.806	1	23856			32367	2260	18689	19202	25830	25830					0.04142340586008686
YPVQEYFL	8	Unmodified	_YPVQEYFL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1058.5193245019	1	1058.51932	1057.51205	1.9937	0.0021103	-0.10798	-0.0001143	1.8857	0.0019961	1058.5186273364693	29.474	0.16899	29.474	29.425	29.594	0	93	166	1.5635144	0.09735477	1.5635144	317.2081	0	19.751495						696	8	4	NaN	NaN	NaN	0.076044	1	10981	10981		70.6	20.767	1	119700			32368	2966	18690	19203	25831	25831					-0.01440750679626035
YPVQEYFL	8	Unmodified	_YPVQEYFL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1058.5193245019	1	1058.51932	1057.51205	1.5385	0.0016286	-0.13788	-0.00014595	1.4007	0.0014826	1058.518796433621	29.497	0.26542	29.49	29.393	29.659	-0.0070648	90	136	1.5652816	0.079603314	1.5637622	317.56665	0	16.150024						764	12	4	NaN	NaN	NaN	0.024916	1	10756	10756		89.521	30.922	1	123660			32369	2966	18690	19203	25832	25832					-0.01440750679626035
YPVRDWLL	8	Unmodified	_YPVRDWLL_					0	0	0		ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;SLC26A6|p.L94Q|1|0.53|ENSG00000225697|chr3:48633292-48633292|A/T|missense_variant	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	ENST00000489483.5_1_3:48670389-48671049:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	531.2925594502001	2	531.292559	1060.57057	1.464	0.00077782	-6.537	-0.0034731	-5.073	-0.0026953	531.2890386013399	26.988	0.12065	26.988	26.964	27.084	0	1257	85	0.86339295	0.051544964	0.86339295	350.3156	0	20.914001						241	6	3	NaN	NaN	NaN	0.78546	1	11136	11136		11.17	3.5801	1	26400			32370	6025	18691	19204	25833	25833					0.042703506855104933
YPVSSSIEL	9	Unmodified	_YPVSSSIEL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5091537461	1	994.509154	993.501877	2.3824	0.0023693	5.7955	0.0057637	8.1779	0.008133	994.518077001876	25.443	0.21715	25.443	25.298	25.515	0	252	118	1.4695803	0.06926811	1.4695803	298.39786	0	14.06485						487	10	3	NaN	NaN	NaN	0.030391	1	8342	8342		58.599	24.16	1	63651			32371	3239	18692	19205	25834	25834					0.004866415951369163
YPVSSSIEL	9	Unmodified	_YPVSSSIEL_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.5091537461	1	994.509154	993.501877	2.1662	0.0021543	5.4325	0.0054027	7.5987	0.007557	994.5156344383735	25.443	0.24124	25.431	25.262	25.503	-0.012011	252	112	1.4695803	0.065708876	1.4680609	298.39786	0	13.342163						453	11	2	NaN	NaN	NaN	0.032764	1	8177	8177		55.494	18.907	1	76969			32372	3239	18692	19205	25835	25835					0.004866415951369163
YPVTHFKRE	9	Unmodified	_YPVTHFKRE_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	392.87685726243336	3	392.876857	1175.60874	1.7954	0.00070535	-8.2678	-0.0032482	-6.4725	-0.0025429	392.8735120146734	15.7	0.21578	15.687	15.591	15.807	-0.012612	1389	40	0.7821392	0.024062753	0.78061974	475.41888	0	14.626404						221	10	3	NaN	NaN	NaN	0.61413	1	15101	15101		2.5994	0.49688	1	24894	+		32373	12112	18693	19206	25836	25836					0.027962366001929695
YPVTHFKRE	9	Unmodified						0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	392.876857	1175.60874	1.7954	0.00070535	-8.2678	-0.0032482	-6.4725	-0.0025429	392.8735120146734	15.7	0.21578	15.687	15.591	15.807	-0.012612	1389	40	0.7821392	0.024062753	0.78061974	475.41888		14.626404	0.07666	0.00039498	0.00016587	NaN	2.5994	221	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24894	+		32374	12112	18693	19206							0.027962366001929695
YPVVEIREL	9	Unmodified	_YPVVEIREL_					0	0	0		ENST00000378037.9_1_13:53030708-53035053:+|nuORF	ENST00000378037.9_1_13:53030708-53035053:+|nuORF	ENST00000378037.9_1_13:53030708-53035053:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.3162315117501	2	559.316232	1116.61791	1.3599	0.00076061	1.4144	0.00079108	2.7743	0.0015517	559.3157100074664	24.357	0.1448	24.344	24.296	24.441	-0.012747	1185	100	0.90755045	0.060687065	0.906031	367.99515	0	24.607544						326	7	3	NaN	NaN	NaN	0.27507	1	13152	13152		20.513	1.395	1	52758			32375	6712	18694	19207	25837	25837					0.06426585165854704
YPVVYVDDSAI	11	Unmodified	_YPVVYVDDSAI_					0	0	0		nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.8084362694001	2	620.808436	1239.60232	1.1672	0.00072461	6.7757	0.0042064	7.9429	0.004931	620.81317124871	24.044	0.21718	24.044	23.995	24.213	0	1191	82	0.90387505	0.049594104	0.90387505	366.0611	0	20.085175						209	10	2	NaN	NaN	NaN	0.7072	1	17513	17513		6.9844	4.0949	1	19962			32376	2363	18695	19208	25838	25838					-0.007897461418451712
YPVVYVDDSAI	11	Unmodified						0	0	0		nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	620.808436	1239.60232	0.9646	0.00059883	8.7401	0.005426	9.7047	0.0060248	620.8131012445518	24.116	0.16887	24.103	24.006	24.175	-0.012749	1191	76	0.90387505	0.04592049	0.9023556	366.06107		18.597382	0.029706	0.0014352	-0.00075972	NaN	6.9844	177	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15259			32377	2363	18695	19208							-0.007897461418451712
YPVWEDFIN	9	Unmodified	_YPVWEDFIN_					0	0	0		nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1;ENST00000524243.5_1_8:125710354-125740196:-|nuORF;ENST00000472084.2_1_8:125711737-125740196:-|nuORF	nc|ENSG00000170873|O43312-4|MTSS1	nc|ENSG00000170873|O43312-4|MTSS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.8537182727	3	394.853718	1181.53933	1.0817	0.00042711	-0.73505	-0.00029024	0.34663	0.00013687	395.1867761865332	36.398	0.048206	36.398	36.35	36.398	0	1479	37	0.72651637	0.022285342	0.72651637	441.5832	0	13.545227						50	3	2	NaN	NaN	NaN	0.61413	1	15868	15868		2.5994	0	1	7764.2			32378	4750	18696	19209	25839	25839					-0.0441826713924911
YPYAEEVM	8	Unmodified	_YPYAEEVM_					0	0	0		ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1001.4284605841001	1	1001.42846	1000.42118	2.2242	0.0022273	-0.43334	-0.00043396	1.7908	0.0017934	1001.4286297760559	23.103	0.12051	23.103	23.055	23.176	0	252	46	1.4695803	0.026658535	1.4695803	298.36966	0	5.412506						117	6	2	NaN	NaN	NaN	0.54545	1	8593	8593		28.667	9.3818	1	10498			32379	4702	18697	19210	25840	25840					-0.07900962719395466
YPYAEEVM	8	Unmodified	_YPYAEEVM_					0	0	0		ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1001.4284605841001	1	1001.42846	1000.42118	1.9135	0.0019162	1.0591	0.0010606	2.9725	0.0029768	1001.4299531887369	23.127	0.14462	23.114	23.065	23.21	-0.013296	249	49	1.4713576	0.028434277	1.4698381	298.73047	0	5.7730103						133	7	2	NaN	NaN	NaN	0.40747	1	8418	8418		36.036	21.023	1	11035			32380	4702	18697	19210	25841	25841					-0.07900962719395466
YPYAEEVM	8	Oxidation (M)	_YPYAEEVM(Oxidation (M))_		YPYAEEVM(1)		YPYAEEVM(76)	0	0	1		ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1017.4233752062001	1	1017.42338	1016.4161	2.3163	0.0023567	0.32221	0.00032782	2.6385	0.0026845	1017.4241249520323	19.3	0.12004	19.3	19.228	19.348	0	276	55	1.4553556	0.032012343	1.4553556	295.4184	0	6.4980774						119	6	2	NaN	NaN	NaN	0.057516	1	9222	9222		76.264	49.532	1	7452.2			32381	4702	18697	19211	25842	25842		501			-0.09145266582004297
YPYAEEVM	8	Oxidation (M)	_YPYAEEVM(Oxidation (M))_		YPYAEEVM(1)		YPYAEEVM(70)	0	0	1		ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1017.4233752062001	1	1017.42338	1016.4161	2.1018	0.0021384	0.043331	4.4086E-05	2.1451	0.0021825	1017.4241847305146	19.322	0.12019	19.308	19.236	19.356	-0.014141	279	55	1.4535767	0.032012343	1.4520572	295.0573	0	6.4980774						126	6	2	NaN	NaN	NaN	0.078841	1	9048	9048		69.745	43.993	1	7994.1			32382	4702	18697	19211	25843	25843		501			-0.09145266582004297
YPYDGIHPDDL	11	Unmodified	_YPYDGIHPDDL_					0	0	0		LYN-TGS1|1|fusion;LYN-TGS1|2|fusion;LYN|p.E110Kfs*15|1|0.39|ENSG00000254087|chr8:55950495-55950495|A/-|frameshift_variant;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN;LYN-NTRK3|1|fusion;LYN-NTRK3|2|fusion	LYN-TGS1|1|fusion	LYN-TGS1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.79331752145	2	652.793318	1303.57208	1.803	0.001177	-2.5904	-0.001691	-0.78748	-0.00051406	652.7911318636529	22.718	0.24122	22.718	22.645	22.887	0	1134	61	0.9387595	0.036686838	0.9387595	379.98346	0	14.8497925						422	11	5	NaN	NaN	NaN	0.036982	1	18826	18826		53.14	27.339	1	101800			32383	7868	18698	19212	25844	25844					-0.06756104807050178
YPYDGIHPDDL	11	Unmodified	_YPYDGIHPDDL_					0	0	0		LYN-TGS1|1|fusion;LYN-TGS1|2|fusion;LYN|p.E110Kfs*15|1|0.39|ENSG00000254087|chr8:55950495-55950495|A/-|frameshift_variant;nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN;LYN-NTRK3|1|fusion;LYN-NTRK3|2|fusion	LYN-TGS1|1|fusion	LYN-TGS1|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.79331752145	2	652.793318	1303.57208	1.0484	0.00068438	-2.5784	-0.0016832	-1.53	-0.0009988	652.791030553019	22.741	0.28928	22.728	22.583	22.872	-0.01354	1134	73	0.9387595	0.044028997	0.93724006	379.98346	0	17.821716						482	13	5	NaN	NaN	NaN	0.022256	1	17998	17998		60.984	37.807	1	108120			32384	7868	18698	19212	25845	25845					-0.06756104807050178
YPYEHSYGL	9	Unmodified	_YPYEHSYGL_					0	0	0		nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-3|ATL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.75346407945	2	564.753464	1127.49238	2.1865	0.0012348	0.082258	4.6455E-05	2.2688	0.0012813	564.7529285189145	19.828	0.31248	19.828	19.732	20.045	0	1212	76	0.8910048	0.045960188	0.8910048	361.24368	0	18.63382						379	14	3	NaN	NaN	NaN	0.018156	1	13987	13987		74.332	47.036	1	54993			32385	2236	18699	19213	25846	25846					-0.06627126690386831
YPYHYAPFL	9	Unmodified	_YPYHYAPFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	585.7845672426	2	585.784567	1169.55458	2.3162	0.0013568	-0.39937	-0.00023394	1.9168	0.0011228	585.7841085763338	25.829	0.24129	25.829	25.732	25.974	0	1182	76	0.9093879	0.045930386	0.9093879	368.53662	0	18.613647						314	11	4	NaN	NaN	NaN	0.16059	1	15468	15468		27.861	8.7423	1	37288			32386	1944	18700	19214	25847	25847					-0.023413555514025575
YPYHYAPFL	9	Unmodified	_YPYHYAPFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.7845672426	2	585.784567	1169.55458	2.0899	0.0012243	-0.027818	-1.6295E-05	2.0621	0.001208	586.285989468636	25.853	0.19308	25.841	25.769	25.962	-0.0116	1182	76	0.9093879	0.045930386	0.90786844	368.53662	0	18.613647						417	9	4	NaN	NaN	NaN	0.16059	1	14928	14928		27.861	11.002	1	47504			32387	1944	18700	19214	25848	25848					-0.023413555514025575
YPYPGELTM	9	Unmodified	_YPYPGELTM_					0	0	0		PRDM1|p.H209Q|1|0.8|ENSG00000057657|chr6:106099515-106099515|C/G|missense_variant;ENST00000481163.1_1_6:106546960-106547465:+|nuORF;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1	PRDM1|p.H209Q|1|0.8|ENSG00000057657|chr6:106099515-106099515|C/G|missense_variant	PRDM1|p.H209Q|1|0.8|ENSG00000057657|chr6:106099515-106099515|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.486309814	1	1070.48631	1069.47903	1.753	0.0018765	1.9189	0.0020542	3.6718	0.0039307	1070.4885869930902	26.239	0.096506	26.228	26.204	26.3	-0.011137	171	49	1.5174994	0.028349876	1.51598	307.82816	0	5.750824						98	5	2	NaN	NaN	NaN	0.094712	1	11245	11245		36.586	18.806	1	7828.6			32388	615	18701	19215	25849	25849					-0.05292700793984295
YPYQLISL	8	Unmodified	_YPYQLISL_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	498.7736682053001	2	498.773668	995.532783	1.869	0.0009322	-5.8625	-0.0029241	-3.9935	-0.0019919	498.7709412198089	26.046	0.1207	26.035	25.987	26.107	-0.011135	1356	43	0.8024889	0.02588147	0.8009695	325.87674	0	10.51001						116	6	3	NaN	NaN	NaN	0.45125	1	8245	8245		33.698	0	1	11244	+		32389	8339	18702	19216	25850	25850					0.03483839700061253
YPYVAVML	8	Unmodified	_YPYVAVML_					0	0	0		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	955.4957522883002	1	955.495752	954.488476	1.4513	0.0013867	1.6172	0.0015452	3.0685	0.0029319	955.4971760909118	31.162	0.072372	31.157	31.133	31.205	-0.0050716	246	49	1.4731345	0.028431177	1.4716152	299.28683	0	5.776184						75	4	2	NaN	NaN	NaN	0.30174	1	7050	7050		41.978	9.1089	1	6945.9			32390	5543	18703	19217	25851	25851					0.009411122822143625
YPYVAVML	8	Oxidation (M)	_YPYVAVM(Oxidation (M))L_		YPYVAVM(1)L		YPYVAVM(52)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	971.4906669104003	1	971.490667	970.48339	1.2004	0.0011662	-0.28916	-0.00028091	0.91127	0.00088529	971.4902372755652	28.145	0.048269	28.137	28.112	28.161	-0.0089798	240	79	1.4766881	0.046215534	1.4751687	299.93845	0	9.387085						134	3	3	NaN	NaN	NaN	0.17057	1	7471	7471		52.308	10.33	1	11248			32391	5543	18703	19218	25852	25852		570			-0.0030319158039446847
YPYYGEKSAAM	11	Unmodified	_YPYYGEKSAAM_					0	0	0		ENST00000493703.1_1_1:120465142-120466525:-|nuORF;NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2	ENST00000493703.1_1_1:120465142-120466525:-|nuORF	ENST00000493703.1_1_1:120465142-120466525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.1936346607334	3	427.193635	1278.55907	1.7876	0.00076367	-0.27592	-0.00011787	1.5117	0.0006458	427.1931191974648	17.861	0.21578	17.861	17.741	17.957	0	1425	28	0.7599118	0.016680479	0.7599118	461.4771	0	10.1297						95	10	2	NaN	NaN	NaN	0.72685	1	18389	18389		2.239	0	1	7440.3			32392	2857	18704	19219	25853	25853					-0.06906259190782293
YQCKYDKVNRI	11	Unmodified	_YQCKYDKVNRI_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	715.3664610623	2	715.366461	1428.71837	1.1558	0.00082682	6.8525	0.004902	8.0083	0.0057289	715.3707537302976	28.918	0.072426	28.909	28.885	28.958	-0.0083504	1026	43	1.0046607	0.025578558	1.0031413	406.28464	0	10.343964						79	4	2	NaN	NaN	NaN	0.76654	1	19307	19307		2.5994	0.26131	1	7183.7	+		32393	10687	18705	19220	25854	25854					0.0211587415719805
YQCQTSFR	8	Unmodified	_YQCQTSFR_					0	0	0			REV__ENSG00000203786|ENST00000606109|KPRP	REV__ENSG00000203786|ENST00000606109|KPRP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7320087433501	2	516.732009	1031.44946	1.6838	0.00087009	-8.8013	-0.0045479	-7.1175	-0.0036778	516.7273751079811	14.909	0.19217	14.909	14.885	15.077	0	1338	76	0.81357855	0.046179354	0.81357855	330.22324	0	18.743744						329	9	3	NaN	NaN	NaN	0.80692	1	9830	9830		8.2903	0	1	31164	+		32394	11217	18706	19221	25855	25855					-0.0650022001943853
YQDGSCTPC	9	Unmodified	_YQDGSCTPC_					0	0	0		LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1	LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	973.3389936497999	1	973.338994	972.331717	1.7765	0.0017291	2.8352	0.0027596	4.6116	0.0044887	973.3425040328071	24.405	0.072384	24.393	24.368	24.441	-0.012747	279	40	1.4535767	0.023126125	1.4520572	295.23627	0	4.6971436						72	4	2	NaN	NaN	NaN	0.53317	1	7517	7517		8.2448	0.70444	1	5508.5			32395	1344	18707	19222	25856	25856					-0.15555540670436585
YQEENQGN	8	Unmodified	_YQEENQGN_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	491.1990529955	2	491.199053	980.383553	2.1531	0.0010576	4.9921	0.0024521	7.1452	0.0035097	491.2015910450596	18.844	0.14401	18.844	18.748	18.892	0	1383	43	0.7858409	0.02590388	0.7858409	319.18344	0	10.521332						80	7	2	NaN	NaN	NaN	0.76406	1	7888	7888		14.042	4.43	1	5747.5			32396	1618	18708	19223	25857	25857					-0.10742337660656176
YQELKSTDMK	10	Unmodified	_YQELKSTDMK_					0	0	0		ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	ENSG00000204219|ENST00000450454|TCEA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.8053706517	2	621.805371	1241.59619	1.5597	0.00096982	7.916	0.0049222	9.4757	0.005892	621.8105501192972	23.899	0.12057	23.899	23.851	23.971	0	1155	103	0.92591566	0.062428296	0.92591566	374.9807	0	25.28244						367	6	5	NaN	NaN	NaN	0.49667	1	17569	17569		19.164	0.93009	1	87023			32397	5867	18709	19224	25858	25858					-0.014945876450383366
YQFLDDTF	8	Unmodified	_YQFLDDTF_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1048.4622035534996	1	1048.4622	1047.45493	2.5556	0.0026795	1.5877	0.0016647	4.1434	0.0043442	1048.4655549734932	25.66	0.04829	25.66	25.636	25.684	0	183	46	1.510409	0.026590705	1.510409	306.4719	0	5.3954163						58	3	2	NaN	NaN	NaN	0.78967	1	10511	10511		10.605	0	1	4038.8	+		32398	8571	18710	19225	25859	25859					-0.06690217956020206
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.3109491686001	2	574.310949	1146.60735	1.7657	0.0010141	-5.8957	-0.003386	-4.13	-0.0023719	574.3073138980494	16.71	0.071901	16.71	16.71	16.782	0	1239	43	0.87444305	0.025775313	0.87444305	354.4576	0	10.448059						96	4	3	NaN	NaN	NaN	0.070055	1	14688	14688		40.154	19.598	1	18244			32399	4918	18711	19226	25860	25860					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	383.20972493460005	3	383.209725	1146.60735	1.6217	0.00062146	-0.80295	-0.0003077	0.81877	0.00031376	383.2095019796598	16.71	0.14393	16.71	16.686	16.83	0	1431	34	0.75620437	0.020391703	0.75620437	459.78912	0	12.398621						86	7	2	NaN	NaN	NaN	0.33629	1	14691	14691		14.854	12.393	1	9903.8			32400	4918	18711	19226	25861	25861					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.3109491686001	2	574.310949	1146.60735	1.4642	0.00084092	-2.6649	-0.0015305	-1.2006	-0.00068954	574.30995774166	16.802	0.14375	16.789	16.741	16.885	-0.013294	1242	31	0.87260187	0.018410921	0.8710824	353.71127	0	7.4628906						127	7	3	NaN	NaN	NaN	0.19268	1	14205	14205		25.801	13.213	1	16952			32401	4918	18711	19226	25862	25862					0.03990602511430552
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	383.20972493460005	3	383.209725	1146.60735	1.7923	0.00068683	-0.27465	-0.00010525	1.5176	0.00058158	383.2093712410546	16.802	0.11982	16.789	16.741	16.861	-0.013294	1428	34	0.7580582	0.020391703	0.75653875	460.91626	0	12.39859						107	6	3	NaN	NaN	NaN	0.18779	1	14207	14207		18.233	13.923	1	10856			32402	4918	18711	19226	25863	25863					0.03990602511430552
YQHGEHPPCFP	11	Unmodified	_YQHGEHPPCFP_					0	0	0		ENST00000439174.6_1_17:63010426-63010525:-|nuORF	ENST00000439174.6_1_17:63010426-63010525:-|nuORF	ENST00000439174.6_1_17:63010426-63010525:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	656.2823970819001	2	656.282397	1310.55024	1.4666	0.00096249	-5.7596	-0.0037799	-4.293	-0.0028175	656.7806181860783	21.97	0.096485	21.97	21.874	21.97	0	1119	67	0.9479278	0.04034251	0.9479278	383.6731	0	16.328613						141	5	2	NaN	NaN	NaN	0.64343	1	18951	18951		11.17	0.20522	1	23334			32403	6999	18712	19227	25864	25864					-0.09261188036612111
YQISMEMLED	10	Unmodified	_YQISMEMLED_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.77013923835	2	629.770139	1257.52573	1.65	0.0010391	1.1725	0.00073837	2.8224	0.0017775	630.2730437616815	18.914	0.12015	18.9	18.828	18.948	-0.014059	1164	49	0.9204082	0.029377997	0.91888875	372.69836	0	11.895966						96	6	2	NaN	NaN	NaN	0.69717	1	17170	17170		8.2448	0.65722	1	8312.5			32404	3805	18713	19228	25865	25865					-0.09273629025005903
YQKGALKL	8	Unmodified	_YQKGALKL_					0	0	0		ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	920.5563787102	1	920.556379	919.549102	1.8254	0.0016804	1.2359	0.0011377	3.0614	0.0028182	920.5570132464917	56.061	0.07206	56.061	56.037	56.109	0	306	70	1.4375578	0.04095471	1.4375578	292.21677	0	8.324951						181	4	4	NaN	NaN	NaN	0.8439	1	6414	6414		3.1533	0	1	41073			32405	14026	18714	19229	25866	25866					0.0861096565678281
YQKGALKL	8	Unmodified						0	0	0		ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	ZBBX|p.H162Y|1|0.05|ENSG00000169064|chr3:167350464-167350464|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	920.556379	919.549102	-0.47532	-0.00043756	3.2198	0.002964	2.7444	0.0025264	920.5595646522486	56.059	0.12005	56.058	56.034	56.154	-0.00056458	300	67	1.4411188	0.03916776	1.4395994	292.94064		7.9617615	-0.0013401	0.00096167	0.0010208	NaN	3.1533	212	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54961			32406	14026	18714	19229							0.0861096565678281
YQLCVQLLSSA	11	Unmodified	_YQLCVQLLSSA_					0	0	0		ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	ENSG00000132879|ENST00000251547|FBXO44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.8182810617002	2	612.818281	1223.62201	0.69229	0.00042425	-8.6817	-0.0053203	-7.9895	-0.0048961	612.8137632910093	31.041	0.16895	31.036	30.988	31.157	-0.0050716	1143	79	0.9332562	0.04772383	0.93173677	378.01462	0	19.330475						191	8	2	NaN	NaN	NaN	0.66717	1	16376	16376		9.6116	0	1	46549			32407	2799	18715	19230	25867	25867					0.019143065972912154
YQLDGVEFL	9	Unmodified	_YQLDGVEFL_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1083.5357028476	1	1083.5357	1082.52843	1.3249	0.0014356	-11.257	-0.012197	-9.9317	-0.010761	1083.5216728494015	29.087	0.096504	29.087	29.039	29.136	0	93	52	1.5635144	0.030040503	1.5635144	317.1137	0	6.0928345						77	5	2	NaN	NaN	NaN	0.29681	1	12083	12083		19.118	2.26	1	7783.4	+		32408	8318	18716	19231	25868	25868					-0.009536695135011541
YQLDGVEFL	9	Unmodified						0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1083.5357	1082.52843	1.3249	0.0014356	-11.257	-0.012197	-9.9317	-0.010761	1083.5216728494015	29.087	0.096504	29.087	29.039	29.136	0	93	52	1.5635144	0.030040503	1.5635144	317.1137		6.0928345	0.0042535	0.0025133	0.00075972	NaN	19.118	77	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7783.4	+		32409	8318	18716	19231							-0.009536695135011541
YQLIMSVFE	9	Unmodified	_YQLIMSVFE_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000146216|Q5TCY1-2|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.28354278735	2	565.283543	1128.55253	1.1613	0.00065648	5.4803	0.0030979	6.6416	0.0037544	565.2866244383325	24.598	0.19287	24.586	24.514	24.707	-0.012394	1236	73	0.876284	0.044157505	0.8747646	355.27133	0	17.90274						206	9	3	NaN	NaN	NaN	0.56671	1	13584	13584		6.8632	2.4501	1	19344			32410	3553	18717	19232	25869	25869					-0.0066015235152008245
YQLVGLKCR	9	Unmodified	_YQLVGLKCR_					0	0	0			REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	540.3051438967	2	540.305144	1078.59573	1.8105	0.00097822	-5.1425	-0.0027785	-3.332	-0.0018003	540.3026968150867	23.947	0.19293	23.947	23.875	24.068	0	1212	91	0.8910048	0.05519098	0.8910048	361.44147	0	22.38855						513	9	4	NaN	NaN	NaN	0.29681	1	11925	11925		19.118	1.338	1	103650	+		32411	10325	18718	19233	25870	25870					0.05958082216420735
YQLVGLKCR	9	Unmodified						0	0	0			REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	540.305144	1078.59573	1.8105	0.00097822	-5.1425	-0.0027785	-3.332	-0.0018003	540.3026968150867	23.947	0.19293	23.947	23.875	24.068	0	1212	91	0.8910048	0.05519098	0.8910048	361.44147		22.38855	-0.0054376	-0.00011812	-0.00015988	NaN	19.118	513	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103650	+		32412	10325	18718	19233							0.05958082216420735
YQLVGLKCR	9	Unmodified						0	0	0			REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	540.305144	1078.59573	1.605	0.00086718	-4.9062	-0.0026508	-3.3012	-0.0017836	540.3025228288624	23.971	0.19294	23.958	23.886	24.079	-0.01305	1209	91	0.892844	0.05519098	0.8913246	362.18753		22.38855	0.0054376	0.00013723	0.00015988	NaN	19.118	513	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103120	+		32413	10325	18718	19233							0.05958082216420735
YQPWSYMAHT	10	Unmodified	_YQPWSYMAHT_					0	0	0		nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.2793230767	2	642.279323	1282.54409	1.6637	0.0010686	-3.4567	-0.0022201	-1.7929	-0.0011516	642.2771120315111	29.16	0.072393	29.16	29.112	29.184	0	1131	37	0.94059354	0.022007346	0.94059354	380.7913	0	8.909515						63	4	2	NaN	NaN	NaN	0.69717	1	18467	18467		8.2448	3.0559	1	5959.1			32414	5828	18719	19234	25871	25871					-0.0858770626812202
YQQLFDYMN	9	Unmodified	_YQQLFDYMN_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.2658813504501	2	611.265881	1220.51721	1.2632	0.00077218	-2.7623	-0.0016885	-1.4991	-0.00091632	611.2645458361973	28.363	0.04826	28.354	28.354	28.402	-0.0089779	1182	28	0.9093879	0.016542077	0.90786844	368.35718	0	6.7005615						25	3	2	NaN	NaN	NaN	0.51576	1	16302	16302		8.962	2.5321	1	3668.1			32415	1893	18720	19235	25872	25872					-0.08422814879304497
YQQLLEEMS	9	Unmodified	_YQQLLEEMS_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	570.7657141749501	2	570.765714	1139.51688	0.68404	0.00039043	-3.509	-0.0020028	-2.825	-0.0016124	570.763471153228	32.513	0.1689	32.51	32.438	32.607	-0.0031052	1194	97	0.902037	0.058870375	0.9005176	365.66992	0	23.86499						320	8	3	NaN	NaN	NaN	0.14301	1	13948	13948		29.598	9.1497	1	38242	+		32416	8651	18721	19236	25873	25873					-0.04730234599173855
YQQLLEEMS	9	Unmodified						0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	570.765714	1139.51688	1.4811	0.00084538	-4.3846	-0.0025026	-2.9035	-0.0016572	570.7629248940992	32.514	0.19302	32.514	32.418	32.611	0	1200	97	0.89836043	0.058876753	0.89836043	364.1795		23.867584	0.0021038	-0.00045321	-0.0010786	NaN	29.598	409	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44992	+		32417	8651	18721	19236							-0.04730234599173855
YQQLLEEMS	9	Unmodified						0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	570.765714	1139.51688	0.68404	0.00039043	-3.509	-0.0020028	-2.825	-0.0016124	570.763471153228	32.513	0.1689	32.51	32.438	32.607	-0.0031052	1194	97	0.902037	0.058870375	0.9005176	365.66992		23.86499	-0.0021038	0.00054627	0.0010786	NaN	29.598	320	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38242	+		32418	8651	18721	19236							-0.04730234599173855
YQQMSDAKA	9	Unmodified	_YQQMSDAKA_					0	0	0		ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	ENSG00000013293|ENST00000231706|SLC7A14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.237123911	2	521.237124	1040.45969	1.1495	0.00059918	4.3879	0.0022872	5.5375	0.0028863	521.2405301939417	30.148	0.072403	30.142	30.118	30.19	-0.0064106	1302	85	0.8357362	0.051712513	0.8342168	339.17804	0	20.987183						120	4	3	NaN	NaN	NaN	0.64666	1	10001	10001		3.5698	0.35817	1	9416.3			32419	424	18722	19237	25874	25874					-0.058916570848850824
YQRDPLKL	8	Unmodified	_YQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	516.7954662799	2	516.795466	1031.57638	2.4131	0.0012471	-3.2158	-0.0016619	-0.80276	-0.00041486	516.7936829712122	18.221	0.071922	18.221	18.197	18.268	0	1500	34	0.71351165	0.020442665	0.71351165	289.6066	0	8.297455						62	4	2	NaN	NaN	NaN	0.7612	1	9859	9859		14.425	4.679	1	5204			32420	4512	18723	19238	25875	25875					0.061854491971644165
YQRDPLKL	8	Unmodified	_YQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	516.7954662799	2	516.795466	1031.57638	2.2867	0.0011818	-3.1737	-0.0016402	-0.88699	-0.00045839	516.7936426709299	18.314	0.072041	18.3	18.276	18.348	-0.01395	1494	37	0.7172283	0.022299886	0.71570885	291.11514	0	9.05127						73	4	2	NaN	NaN	NaN	0.84562	1	9650	9650		2.1763	0	1	5564.9			32421	4512	18723	19238	25876	25876					0.061854491971644165
YQRDYSLI	8	Unmodified	_YQRDYSLI_					0	0	0		nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1057.5312861717	1	1057.53129	1056.52401	1.269	0.001342	8.2711	0.0087469	9.5401	0.010089	1057.5433843370122	34.033	0.072384	34.032	33.96	34.032	-0.0012474	168	181	1.5192716	0.10622227	1.5177522	308.23575	0	21.550781						333	4	3	NaN	NaN	NaN	0.39717	1	10715	10715		36.586	2.1477	1	71939			32422	4852	18724	19239	25877	25877					-0.0019913393641672883
YQSIYLRS	8	Unmodified	_YQSIYLRS_					0	0	0			REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1029.5363715495998	1	1029.53637	1028.5291	1.1251	0.0011584	-9.7862	-0.010075	-8.6611	-0.0089169	1029.5246573370223	29.497	0.14476	29.49	29.417	29.562	-0.0070648	219	103	1.4891195	0.060307503	1.4876001	302.22443	0	12.239716						163	7	2	NaN	NaN	NaN	0.82332	1	9518	9518		6.0903	0	1	13784	+		32423	13162	18725	19240	25878	25878					0.015971699261854155
YQSIYLRS	8	Unmodified						0	0	0			REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1029.53637	1028.5291	1.5753	0.0016218	-11.898	-0.012249	-10.322	-0.010627	1029.5233648223234	29.498	0.14487	29.498	29.449	29.594	0	222	88	1.4873441	0.051457763	1.4873441	301.8641		10.443634	0.003948	-0.00065746	-0.00012796	NaN	6.0903	202	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16520	+		32424	13162	18725	19240							0.015971699261854155
YQSIYLRS	8	Unmodified						0	0	0			REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	REV__nc|ENSG00000166471|Q5BJD5-2|TMEM41B	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1029.53637	1028.5291	1.1251	0.0011584	-9.7862	-0.010075	-8.6611	-0.0089169	1029.5246573370223	29.497	0.14476	29.49	29.417	29.562	-0.0070648	219	103	1.4891195	0.060307503	1.4876001	302.22443		12.239716	-0.003948	0.0015162	0.00012796	NaN	6.0903	163	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13784	+		32425	13162	18725	19240							0.015971699261854155
YQSSVWLGTED	11	Unmodified	_YQSSVWLGTED_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.7907748325	2	642.790775	1283.567	2.7346	0.0017578	2.6235	0.0016864	5.3581	0.0034441	643.2945084501465	18.458	0.096012	18.444	18.42	18.516	-0.01395	1176	49	0.9130621	0.029384315	0.91154265	369.64224	0	11.895905						89	5	2	NaN	NaN	NaN	0.74794	1	17666	17666		4.3102	0.34164	1	7888.9			32426	1757	18726	19241	25879	25879					-0.06344408669679069
YQSSVWLGTED	11	Unmodified						0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	642.790775	1283.567	2.51	0.0016134	-1.0061	-0.00064673	1.5039	0.00096668	642.7905682796852	18.46	0.071928	18.46	18.436	18.508	0	1176	34	0.9130621	0.020204961	0.9130621	369.64224		8.179749	0.0083717	-0.002197	0.00075972	NaN	4.3102	80	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6337.4			32427	1757	18726	19241							-0.06344408669679069
YQTEDLFHF	9	Unmodified	_YQTEDLFHF_					0	0	0		tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.2720209733501	2	600.272021	1198.52949	1.3056	0.00078372	-5.7078	-0.0034262	-4.4022	-0.0026425	600.2687950162912	28.677	0.19304	28.677	28.629	28.822	0	1218	58	0.8873258	0.034952402	0.8873258	359.49445	0	14.160736						297	9	4	NaN	NaN	NaN	0.53317	1	16413	16413		8.2448	0.65722	1	37810			32428	13797	18727	19242	25880	25880					-0.06183455144605432
YQTLQFNCAT	10	Unmodified	_YQTLQFNCAT_					0	0	0			REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781	REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.7713308691	2	594.771331	1187.52811	0.97526	0.00058006	-5.9487	-0.0035381	-4.9734	-0.0029581	594.7667356256829	36.012	0.16891	36.012	35.988	36.157	0	1188	64	0.90571284	0.038602352	0.90571284	366.98254	0	15.641144						137	8	2	NaN	NaN	NaN	0.73444	1	16072	16072		5.6942	0.78442	1	16025	+		32429	13259	18728	19243	25881	25881					-0.05815412505035056
YQTPRLWLF	9	Unmodified	_YQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.33221592695	2	612.332216	1222.64988	0.88959	0.00054473	-1.9676	-0.0012048	-1.078	-0.00066011	612.3310466298642	30.849	0.21715	30.849	30.753	30.97	0	1131	85	0.94059354	0.05137825	0.94059354	380.98996	0	20.810913						639	10	5	NaN	NaN	NaN	0.0073225	1	17048	17048		97.85	61.615	1	281480			32430	3496	18729	19244	25882	25882					0.0474599763963397
YQTPRLWLF	9	Unmodified	_YQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.33221592695	2	612.332216	1222.64988	1.0868	0.0006655	-2.0048	-0.0012276	-0.918	-0.00056212	612.3310613484531	30.872	0.21724	30.866	30.794	31.011	-0.0057545	1131	82	0.94059354	0.04954064	0.93907416	380.98996	0	20.06659						695	10	5	NaN	NaN	NaN	0.006197	1	16352	16352		100.15	64.849	1	285090			32431	3496	18729	19244	25883	25883					0.0474599763963397
YQTQGLWTF	9	Unmodified	_YQTQGLWTF_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1143.5469362358997	1	1143.54694	1142.53966	1.6777	0.0019185	-3.5817	-0.0040959	-1.9041	-0.0021774	1143.5430441267674	30.824	0.14478	30.818	30.746	30.891	-0.0057564	63	91	1.5811787	0.052998543	1.5796592	320.48422	0	10.742096						172	7	2	NaN	NaN	NaN	0.35794	1	14061	14061		15.463	0.28729	1	16498	+		32432	10073	18730	19245	25884	25884					-0.025908474194011433
YQWQHRLNQ	9	Unmodified	_YQWQHRLNQ_					0	0	0			REV__ENST00000412193.1_1_2:242967508-242967694:-|nuORF	REV__ENST00000412193.1_1_2:242967508-242967694:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	424.8792608100667	3	424.879261	1271.61595	2.0171	0.000857	6.6543	0.0028273	8.6714	0.0036843	424.8819280244127	13.421	0.072062	13.421	13.373	13.445	0	1443	43	0.7487872	0.025971413	0.7487872	454.7479	0	15.772736						37	4	2	NaN	NaN	NaN	0.66196	1	18263	18263		1.1768	0.4607	1	2022.1	+		32433	12067	18731	19246	25885	25885					-0.008990307993826718
YQYTGPPCAWL	11	Unmodified	_YQYTGPPCAWL_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.79734865435	2	649.797349	1297.58014	2.246	0.0014595	3.6865	0.0023955	5.9325	0.0038549	650.3017980773707	13.469	0.048052	13.469	13.469	13.517	0	1170	37	0.91673553	0.02204299	0.91673553	371.0867	0	8.922821						33	3	2	NaN	NaN	NaN	0.76654	1	18729	18729		2.5994	0.13793	1	2206	+		32434	8439	18732	19247	25886	25886					-0.05674249091271122
YQYTGPPCAWL	11	Unmodified						0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	649.797349	1297.58014	2.246	0.0014595	3.6865	0.0023955	5.9325	0.0038549	650.3017980773707	13.469	0.048052	13.469	13.469	13.517	0	1170	37	0.91673553	0.02204299	0.91673553	371.0867		8.922821	0.00469	0.0026538	-0.00015849	NaN	2.5994	33	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2206	+		32435	8439	18732	19247							-0.05674249091271122
YQYTGPPCAWL	11	Unmodified						0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	649.797349	1297.58014	2.0058	0.0013033	-0.2101	-0.00013652	1.7957	0.0011668	649.7980138625052	13.469	0.048001	13.459	13.435	13.483	-0.010098	1167	34	0.91857195	0.02020061	0.9170525	371.8301		8.177063	-0.00469	-0.0024102	0.00015849	NaN	2.5994	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2848.2	+		32436	8439	18732	19247							-0.05674249091271122
YRAAAAAA	8	Unmodified	_YRAAAAAA_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	382.7061199563499	2	382.70612	763.397687	1.2736	0.0004874	-5.7484	-0.0022	-4.4749	-0.0017126	382.7036346908338	29.449	0.1207	29.449	29.425	29.546	0	1371	31	0.79324204	0.018500745	0.79324204	323.45328	0	7.5438843						74	6	2	NaN	NaN	NaN	0.84945	1	4262	4262		0	0	1	5774			32437	593	18733	19248	25887	25887					0.006524043489207543
YRCRAVNCV	9	Unmodified	_YRCRAVNCV_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.2629531185	2	542.262953	1082.51135	1.7394	0.0009432	1.6787	0.0009103	3.4181	0.0018535	542.2639831952208	16.901	0.11987	16.901	16.877	16.997	0	1530	46	0.6949163	0.027903616	0.6949163	281.8841	0	11.318756						101	6	2	NaN	NaN	NaN	0.62619	1	12082	12082		4.4131	0	1	9429.9			32438	7967	18734	19249	25888	25888					-0.026601918719734385
YRDFSMWTLFF	11	Unmodified	_YRDFSMWTLFF_					0	0	0			REV__ENSG00000164850|ENST00000397088|GPER1	REV__ENSG00000164850|ENST00000397088|GPER1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	756.8526551953	2	756.852655	1511.69076	1.6223	0.0012278	-8.3408	-0.0063128	-6.7186	-0.005085	757.3469108206999	27.952	0.12065	27.943	27.895	28.015	-0.009552	1002	46	1.0192708	0.027377605	1.0177513	411.97598	0	11.065674						72	6	2	NaN	NaN	NaN	0.75376	1	19599	19599		3.9281	0.7165	1	5491.3	+		32439	10353	18735	19250	25889	25889					-0.04462029103046916
YRDLRSLYK	9	Unmodified	_YRDLRSLYK_					0	0	0		ENSG00000169862|ENST00000304623|CTNND2;nc|ENSG00000169862|Q9UQB3-2|CTNND2	ENSG00000169862|ENST00000304623|CTNND2	ENSG00000169862|ENST00000304623|CTNND2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.33802958635	2	607.33803	1212.66151	0.66558	0.00040423	2.1757	0.0013214	2.8413	0.0017256	607.339031525862	29.545	0.0965	29.538	29.514	29.61	-0.0070648	966	106	1.0411623	0.0638262	1.0396428	421.76434	0	25.855377						226	5	3	NaN	NaN	NaN	0.68263	1	16130	16130		0.69115	0	1	16391			32440	4699	18736	19251	25890	25890					0.06368194662968563
YRDTTKWMYYF	11	Unmodified	_YRDTTKWMYYF_					0	0	0			REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	787.3608443681501	2	787.360844	1572.70714	2.212	0.0017416	-11.873	-0.0093481	-9.6608	-0.0076065	787.3504576944528	22.911	0.048225	22.911	22.887	22.935	0	1017	31	1.010141	0.018264532	1.010141	408.1421	0	7.379669						61	3	3	NaN	NaN	NaN	0.7072	1	20723	20723		6.9844	4.3849	1	4160.7	+		32441	9994	18737	19252	25891	25891					-0.05630947936924713
YRDTTKWMYYF	11	Unmodified						0	0	0			REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	787.360844	1572.70714	2.212	0.0017416	-11.873	-0.0093481	-9.6608	-0.0076065	787.3504576944528	22.911	0.048225	22.911	22.887	22.935	0	1017	31	1.010141	0.018264532	1.010141	408.1421		7.379669	-0.016967	-0.003167	0.00075972	NaN	6.9844	61	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4160.7	+		32442	9994	18737	19252							-0.05630947936924713
YRDTTKWMYYF	11	Unmodified						0	0	0			REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	REV__MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	787.360844	1572.70714	2.2967	0.0018083	-8.2943	-0.0065306	-5.9976	-0.0047223	787.8549797508824	22.958	0.072338	22.945	22.921	22.993	-0.01354	1017	34	1.010141	0.020089984	1.0086216	408.1421		8.117218	0.016967	0.0024682	-0.00075972	NaN	6.9844	49	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3887.5	+		32443	9994	18737	19252							-0.05630947936924713
YREGPIPEPC	10	Unmodified	_YREGPIPEPC_					0	0	0		ENSG00000206260|ENST00000383163|PRR23A;ENSG00000184814|ENST00000329447|PRR23B	ENSG00000206260|ENST00000383163|PRR23A	ENSG00000206260|ENST00000383163|PRR23A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	580.7738735580501	2	580.773874	1159.53319	1.8538	0.0010766	-3.88	-0.0022534	-2.0262	-0.0011767	580.7718021394724	23.754	0.21688	23.741	23.693	23.91	-0.013048	1209	82	0.892844	0.049669147	0.8913246	361.86853	0	20.130829						303	10	2	NaN	NaN	NaN	0.62764	1	14611	14611		13.003	1.8325	1	80876			32444	5942	18738	19253	25892	25892					-0.04019108642387437
YREIGRRLKFW	11	Unmodified	_YREIGRRLKFW_					0	0	0		nc|ENSG00000186431|P24071-9|FCAR;nc|ENSG00000186431|P24071-3|FCAR;nc|ENSG00000186431|P24071-8|FCAR;nc|ENSG00000186431|P24071-5|FCAR;nc|ENSG00000186431|P24071-4|FCAR;nc|ENSG00000186431|P24071-11|FCAR;nc|ENSG00000186431|P24071-2|FCAR;nc|ENSG00000186431|P24071-10|FCAR;ENSG00000186431|ENST00000355524|FCAR;nc|ENSG00000186431|P24071-6|FCAR	nc|ENSG00000186431|P24071-9|FCAR	nc|ENSG00000186431|P24071-9|FCAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	762.43332695505	2	762.433327	1522.8521	1.4046	0.0010709	1.6039	0.0012228	3.0084	0.0022937	762.4337155723308	35.963	0.1447	35.964	35.891	36.036	0.0011024	975	46	1.0356921	0.027354121	1.0341727	418.58536	0	11.05542						176	7	4	NaN	NaN	NaN	0.7072	1	19625	19625		6.9844	1.2902	1	11427			32445	5467	18739	19254	25893	25893					0.1115890104506434
YRFDCETNQW	10	Unmodified	_YRFDCETNQW_					0	0	0		KLHL25|p.T519M|1|0.21|ENSG00000183655|chr15:85768255-85768255|G/A|missense_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.T519M|1|0.21|ENSG00000183655|chr15:85768255-85768255|G/A|missense_variant	KLHL25|p.T519M|1|0.21|ENSG00000183655|chr15:85768255-85768255|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	454.5241548536333	3	454.524155	1360.55064	2.5008	0.0011367	-0.27079	-0.00012308	2.23	0.0010136	454.5241625289609	18.026	0.095936	18.012	17.916	18.012	-0.013786	1362	22	0.79879075	0.012945652	0.7972713	484.7754	0	7.8565063						45	5	2	NaN	NaN	NaN	0.76548	1	18783	18783		1.5256	0	1	2979.6			32446	5316	18740	19255	25894	25894					-0.11521813107401613
YRFRQERS	8	Unmodified	_YRFRQERS_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	381.20022288079997	3	381.200223	1140.57884	1.7589	0.00067049	6.2268	0.0023736	7.9857	0.0030441	381.20333739956095	27.881	0.024134	27.881	27.881	27.905	0	1515	28	0.7042165	0.016734898	0.7042165	428.20612	0	10.175842						33	2	2	NaN	NaN	NaN	0.82332	1	14471	14471		3.9685	1.3691	1	2779.4			32447	4549	18741	19256	25895	25895					0.01417297654847971
YRFSASRRS	9	Unmodified	_YRFSASRRS_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3;nc|ENSG00000182077|Q3KNS1-2|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2966960879	2	565.296696	1128.57884	1.2779	0.00072238	5.5944	0.0031625	6.8723	0.0038849	565.2998698693611	22.741	0.14461	22.728	22.68	22.824	-0.01354	1200	82	0.89836043	0.049658418	0.896841	364.22165	0	20.132996						176	7	2	NaN	NaN	NaN	0.18779	1	13590	13590		26.115	6.9966	1	20508			32448	7995	18742	19257	25896	25896					0.019692976548412844
YRFSSSLN	8	Unmodified	_YRFSSSLN_					0	0	0			REV__ENSG00000196757|ENST00000254321|ZNF700	REV__ENSG00000196757|ENST00000254321|ZNF700	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	487.24052387970005	2	487.240524	972.466495	1.8648	0.00090859	-1.3573	-0.00066131	0.50752	0.00024728	487.2398408063014	16.326	0.16797	16.326	16.278	16.446	0	1338	43	0.81357855	0.025867462	0.81357855	330.48685	0	10.507721						149	8	3	NaN	NaN	NaN	0.75561	1	7672	7672		15.175	2.1725	1	13270	+		32449	11120	18743	19258	25897	25897					-0.020839761419892966
YRFVKGCENC	10	Unmodified	_YRFVKGCENC_					0	0	0			REV__ZNF841|p.C766_G767insY|1|0.14|ENSG00000197608|chr19:52065235-52065236|-/ATA|inframe_insertion	REV__ZNF841|p.C766_G767insY|1|0.14|ENSG00000197608|chr19:52065235-52065236|-/ATA|inframe_insertion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	406.85132590840004	3	406.851326	1217.53215	3.1349	0.0012754	-8.3111	-0.0033814	-5.1762	-0.0021059	406.8497918813813	16.011	0.047894	15.999	15.999	16.047	-0.012611	1410	22	0.76917666	0.012966692	0.7676573	467.35327	0	7.8785706						33	3	2	NaN	NaN	NaN	0.68669	1	16247	16247		4.6175	2.5816	1	2091.8	+		32450	10606	18744	19259	25898	25898					-0.06791646282954389
YRFWILPQL	9	Unmodified	_YRFWILPQL_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3504086801001	2	618.350409	1234.68626	0.42316	0.00026166	-2.5478	-0.0015755	-2.1247	-0.0013138	618.3483512765364	33.769	0.14478	33.769	33.697	33.842	0	1140	76	0.93509084	0.04589075	0.93509084	378.71985	0	18.586151						185	7	2	NaN	NaN	NaN	0.29681	1	17403	17403		19.118	4.6933	1	23698			32451	1272	18745	19260	25899	25899					0.07830874536375632
YRGLFVII	8	Unmodified	_YRGLFVII_					0	0	0			REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5927642165001	1	980.592764	979.585488	0.44562	0.00043697	0.62324	0.00061115	1.0689	0.0010481	980.5936200287741	58.314	0.071968	58.314	58.266	58.338	-0.00048447	201	49	1.4997677	0.028385997	1.4982482	304.5866	0	5.7648926						59	4	2	NaN	NaN	NaN	0.84887	1	7718	7718		0.32989	0	1	4238.3	+		32452	12651	18746	19261	25900	25900					0.09487842553505743
YRGRPSWQGT	10	Unmodified	_YRGRPSWQGT_					0	0	0		ENSG00000171136|ENST00000431365|RLN3	ENSG00000171136|ENST00000431365|RLN3	ENSG00000171136|ENST00000431365|RLN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.20374444289996	3	403.203744	1206.5894	1.1802	0.00047586	5.8373	0.0023536	7.0175	0.0028295	403.2061612496921	14.332	0.19163	14.321	14.249	14.441	-0.011218	1470	58	0.7320868	0.03526789	0.73056734	444.86246	0	21.43103						174	9	2	NaN	NaN	NaN	0.6772	1	15983	15983		7.8039	2.1067	1	13217			32453	4768	18747	19262	25901	25901					-0.005627196907425969
YRIAKKVG	8	Unmodified	_YRIAKKVG_					0	0	0			REV__tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	REV__tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	934.5832621627002	1	934.583262	933.575986	1.3227	0.0012362	-1.1255	-0.0010519	0.19721	0.00018431	934.5829354785991	41.087	0.072128	41.094	41.022	41.094	0.0074959	885	49	1.090315	0.029091477	1.0887955	221.58255	0	5.912216						98	4	2	NaN	NaN	NaN	0.84727	1	6562	6562		1.2418	0	1	7319.7	+		32454	13439	18748	19263	25902	25902					0.10654074267995384
YRKGVIKA	8	Unmodified	_YRKGVIKA_					0	0	0		ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	934.5832621627002	1	934.583262	933.575986	0.9507	0.00088851	-0.45109	-0.00042158	0.49962	0.00046693	934.5840820796535	40.296	0.07209	40.296	40.296	40.368	0	888	49	1.088497	0.029091477	1.088497	221.21309	0	5.9122314						84	4	2	NaN	NaN	NaN	0.84727	1	6706	6706		1.2418	0	1	6003.9			32455	4843	18749	19264	25903	25903					0.10654074267995384
YRKGYLSLSK	10	Unmodified	_YRKGYLSLSK_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.8482301319001	2	607.84823	1213.68191	1.5583	0.00094723	-4.0943	-0.0024887	-2.5359	-0.0015415	607.8457697136558	22.983	0.096291	22.983	22.935	23.031	0	1134	37	0.9387595	0.02200979	0.9387595	380.27844	0	8.9158325						105	5	3	NaN	NaN	NaN	0.77144	1	16827	16827		2.5994	0	1	11911			32456	5884	18750	19265	25904	25904					0.0836136532279852
YRKINTLKNMA	11	Unmodified	_YRKINTLKNMA_					0	0	0			REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.3793714723001	2	676.379371	1350.74419	1.3025	0.00088102	3.7884	0.0025624	5.091	0.0034434	676.3834577983789	27.567	0.048306	27.567	27.543	27.591	0	1071	37	0.977233	0.02195996	0.977233	395.4115	0	8.885529						48	3	2	NaN	NaN	NaN	0.76654	1	19551	19551		2.5994	0	1	3749.2	+		32457	10583	18751	19266	25905	25905					0.08284768399494169
YRKINTLKNMA	11	Unmodified						0	0	0			REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	676.379371	1350.74419	1.3025	0.00088102	3.7884	0.0025624	5.091	0.0034434	676.3834577983789	27.567	0.048306	27.567	27.543	27.591	0	1071	37	0.977233	0.02195996	0.977233	395.4115		8.885529	-0.0068858	-0.00093211	0.0025899	NaN	2.5994	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3749.2	+		32458	10583	18751	19266							0.08284768399494169
YRKINTLKNMA	11	Unmodified						0	0	0			REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	676.379371	1350.74419	1.478	0.00099969	5.1319	0.0034711	6.6099	0.0044708	676.3825404435667	27.59	0.048264	27.581	27.557	27.605	-0.009552	1077	37	0.9735726	0.021962345	0.9720532	393.93042		8.886475	0.0068858	0.00088524	-0.0025899	NaN	2.5994	48	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3423.9	+		32459	10583	18751	19266							0.08284768399494169
YRKRGFQEVV	10	Unmodified	_YRKRGFQEVV_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	427.9069279260333	3	427.906928	1280.69895	1.4974	0.00064073	-4.0072	-0.0017147	-2.5098	-0.001074	428.2394631043	19.612	0.072012	19.612	19.54	19.612	0	1407	46	0.77102906	0.027791798	0.77102906	468.2201	0	16.877014						64	4	2	NaN	NaN	NaN	0.65442	1	18438	18438		8.9416	3.008	1	7866.6			32460	1915	18752	19267	25906	25906					0.06983285928595251
YRKRLFVF	8	Unmodified	_YRKRLFVF_					0	0	0			REV__ENSG00000253710|ENST00000521508|ALG11	REV__ENSG00000253710|ENST00000521508|ALG11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	376.8940711424333	3	376.894071	1127.66038	2.4067	0.00090709	0.29435	0.00011094	2.7011	0.001018	376.89499197656994	14.021	0.071925	14.01	13.962	14.034	-0.010672	1452	25	0.74322224	0.014842391	0.7417028	451.98572	0	9.026306						34	4	2	NaN	NaN	NaN	0.78967	1	13566	13566		10.605	3.6206	1	2736.3	+		32461	11368	18753	19268	25907	25907					0.101660250847317
YRLGQGPLCA	10	Unmodified	_YRLGQGPLCA_					0	0	0			REV__nc|nan|Q8NAV2-2|C8orf58	REV__nc|nan|Q8NAV2-2|C8orf58	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	359.8551762298333	3	359.855176	1076.5437	2.4207	0.0008711	-12.007	-0.0043206	-9.5859	-0.0034495	359.85075662560024	25.78	0.096533	25.769	25.721	25.817	-0.0116	1548	34	0.6837494	0.020478249	0.68222994	416.05573	0	12.460815						100	5	3	NaN	NaN	NaN	0.70538	1	11510	11510		7.6826	0.094995	1	10061	+		32462	11343	18754	19269	25908	25908					0.008489188026715055
YRLLNDYANG	10	Unmodified	_YRLLNDYANG_					0	0	0		nc|ENSG00000292336|P46597-2|ASMT;nc|ENSG00000292336|P46597|ASMT;ENSG00000196433|ENST00000381241|ASMT	nc|ENSG00000292336|P46597-2|ASMT	nc|ENSG00000292336|P46597-2|ASMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	400.1998885298	3	400.199889	1197.57784	1.7856	0.0007146	-6.9218	-0.0027701	-5.1362	-0.0020555	400.19730548925384	18.938	0.096136	18.924	18.876	18.972	-0.014059	1431	31	0.75620437	0.01853484	0.7546849	459.55692	0	11.263947						58	5	2	NaN	NaN	NaN	0.77421	1	15743	15743		0.71611	0	1	5982.7			32463	5622	18755	19270	25909	25909					-0.013049615047066254
YRLQTLGMRI	10	Unmodified	_YRLQTLGMRI_					0	0	0		ENST00000418833.2_1_1:1335129-1335381:+|nuORF	ENST00000418833.2_1_1:1335129-1335381:+|nuORF	ENST00000418833.2_1_1:1335129-1335381:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	417.57278031236666	3	417.57278	1249.69651	1.373	0.00057331	5.8405	0.0024388	7.2135	0.0030122	417.57489995033825	19.202	0.072096	19.188	19.14	19.212	-0.014141	1428	31	0.7580582	0.018536866	0.75653875	460.46487	0	11.259827						61	4	2	NaN	NaN	NaN	0.43797	1	17020	17020		22.026	2.7057	1	9844.8			32464	6899	18756	19271	25910	25910					0.08165114199277923
YRLRYRRFCYW	11	Unmodified	_YRLRYRRFCYW_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.2892663804334	3	561.289266	1680.84597	1.9799	0.0011113	-1.1723	-0.00065801	0.80759	0.00045329	561.2886357275099	26.625	0.1207	26.625	26.553	26.674	0	1203	130	0.8965218	0.079102814	0.8965218	543.0444	0	47.91443						159	6	2	NaN	NaN	NaN	0.78071	1	20826	20826		0.11792	0.11792	1	174630	+		32465	12936	18757	19272	25911	25911					0.032780595418898884
YRNEFRAWTDI	11	Unmodified	_YRNEFRAWTDI_					0	0	0		nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	490.9089971226666	3	490.908997	1469.70516	2.1489	0.0010549	2.8887	0.0014181	5.0375	0.002473	490.91039790992846	18.005	0.095919	18.005	17.981	18.077	0	1401	37	0.77473325	0.022225022	0.77473325	469.8243	0	13.477966						100	5	4	NaN	NaN	NaN	0.77168	1	20466	20466		0.56539	0	1	9115.1			32466	4791	18758	19273	25912	25912					-0.010902406305376644
YRNEFRAWTDI	11	Unmodified	_YRNEFRAWTDI_					0	0	0		nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	490.9089971226666	3	490.908997	1469.70516	1.7085	0.00083869	4.6839	0.0022994	6.3924	0.0031381	490.9114297362624	18.146	0.096033	18.132	18.084	18.18	-0.013948	1404	34	0.77288127	0.020371795	0.7713618	468.70117	0	12.3541565						120	5	3	NaN	NaN	NaN	0.75376	1	19477	19477		1.5256	0	1	10595			32467	4791	18758	19273	25913	25913					-0.010902406305376644
YRNLTRHQN	9	Unmodified	_YRNLTRHQN_					0	0	0		nc|ENSG00000189144|Q86YE8-2|ZNF573;nc|ENSG00000189144|Q86YE8-4|ZNF573;nc|ENSG00000189144|Q86YE8-3|ZNF573;ENSG00000189144|ENST00000536220|ZNF573	nc|ENSG00000189144|Q86YE8-2|ZNF573	nc|ENSG00000189144|Q86YE8-2|ZNF573	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	401.21101046776664	3	401.21101	1200.6112	1.1176	0.0004484	2.4715	0.0009916	3.5892	0.00144	401.2119904656659	15.029	0.12014	15.029	14.933	15.053	0	1404	34	0.77288127	0.02037406	0.77288127	469.67816	0	12.381226						64	6	2	NaN	NaN	NaN	0.45297	1	16500	16500		6.9844	2.2553	1	5218.3			32468	5583	18759	19274	25914	25914					0.01892085057852455
YRNYLDIMY	9	Unmodified	_YRNYLDIMY_					0	0	0			REV__ENSG00000263761|ENST00000581492|GDF2	REV__ENSG00000263761|ENST00000581492|GDF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	417.5339912584333	3	417.533991	1249.58014	2.1292	0.000889	-3.2101	-0.0013403	-1.081	-0.00045133	417.53222318590986	18.676	0.071974	18.676	18.652	18.724	0	1458	58	0.7395112	0.035256445	0.7395112	449.19946	0	21.415741						85	4	2	NaN	NaN	NaN	0.67989	1	17766	17766		0.38509	0.20078	1	11929	+		32469	11404	18760	19275	25915	25915					-0.03466249091275131
YRPFCREEL	9	Unmodified	_YRPFCREEL_					0	0	0			REV__ENST00000474120.5_1_7:100895302-100895431:-|nuORF	REV__ENST00000474120.5_1_7:100895302-100895431:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.7951403164001	2	606.79514	1211.57573	1.213	0.00073602	4.0692	0.0024692	5.2822	0.0032052	606.7978600196184	23.778	0.14461	23.765	23.717	23.861	-0.013048	1026	91	1.0046607	0.054799497	1.0031413	406.98206	0	22.198944						295	7	3	NaN	NaN	NaN	0.67989	1	16091	16091		0.92586	0.12598	1	27975	+		32470	12343	18761	19276	25916	25916					-0.02159713514174655
YRPFCREEL	9	Unmodified						0	0	0			REV__ENST00000474120.5_1_7:100895302-100895431:-|nuORF	REV__ENST00000474120.5_1_7:100895302-100895431:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	606.79514	1211.57573	1.213	0.00073602	4.0692	0.0024692	5.2822	0.0032052	606.7978600196184	23.778	0.14461	23.765	23.717	23.861	-0.013048	1026	91	1.0046607	0.054799497	1.0031413	406.98206		22.198944	0.029444	7.9078E-05	0.0010675	NaN	0.92586	295	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27975	+		32471	12343	18761	19276							-0.02159713514174655
YRPLCRLNF	9	Unmodified	_YRPLCRLNF_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF;ENST00000478773.5_1_11:3829798-3845998:+|nuORF;ENST00000532017.5_1_11:3832520-3846091:+|nuORF;nc|ENSG00000148985|Q9UHJ9-4|PGAP2;nc|ENSG00000148985|Q9UHJ9-3|PGAP2;nc|ENSG00000148985|Q9UHJ9|PGAP2;nc|ENSG00000148985|Q9UHJ9-5|PGAP2;ENSG00000148985|ENST00000278243|PGAP2	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.316042934	2	591.316043	1180.61753	1.6152	0.00095511	7.505	0.0044378	9.1202	0.0053929	591.3210623034914	28.653	0.21717	28.653	28.581	28.798	0	1137	85	0.9369253	0.051389337	0.9369253	379.65485	0	20.823639						422	10	3	NaN	NaN	NaN	0.23112	1	15851	15851		23.334	8.9094	1	89374			32472	3657	18762	19277	25917	25917					0.03444886965007754
YRRQLQAR	8	Unmodified	_YRRQLQAR_					0	0	0		ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	364.21246283323336	3	364.212463	1089.61556	1.9884	0.00072422	-9.0886	-0.0033102	-7.1002	-0.002586	364.2089543761441	17.741	0.095879	17.741	17.717	17.813	0	1455	37	0.7413668	0.02226597	0.7413668	451.04715	0	13.546631						69	5	2	NaN	NaN	NaN	0.84645	1	12386	12386		1.7022	0.89085	1	6971			32473	1215;3649	18763	19278	25918	25918					0.07433594271424226
YRRQTELQD	9	Unmodified	_YRRQTELQD_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.80455090975	2	604.804551	1207.59455	1.4346	0.00086765	1.572	0.00095076	3.0066	0.0018184	605.3049893766812	27.905	0.14478	27.905	27.857	28.001	0	1149	85	0.92958635	0.051383734	0.92958635	376.58383	0	20.81604						234	7	3	NaN	NaN	NaN	0.46215	1	16671	16671		11.17	1.5587	1	27428			32474	542	18764	19279	25919	25919					-0.0009446061878861656
YRRWFEDT	8	Unmodified	_YRRWFEDT_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.777804843	2	586.777805	1171.54106	0.88841	0.0005213	-2.3852	-0.0013996	-1.4967	-0.00087825	586.7765165986931	20.911	0.24081	20.897	20.825	21.065	-0.014086	1212	82	0.8910048	0.049658418	0.88948536	361.0796	0	20.124084						332	11	4	NaN	NaN	NaN	0.78967	1	14991	14991		10.605	1.4818	1	27590	+		32475	9413	18765	19280	25920	25920					-0.03785213330638726
YRTCFKTMA	9	Unmodified	_YRTCFKTMA_					0	0	0		NAA25-SLC25A21|1|fusion;NAA25-SLC25A21|2|fusion;nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	NAA25-SLC25A21|1|fusion	NAA25-SLC25A21|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	374.18078346880003	3	374.180783	1119.52052	2.2274	0.00083346	-4.4689	-0.0016722	-2.2415	-0.00083871	374.51370407653695	16.035	0.095818	16.023	15.999	16.094	-0.012611	1416	43	0.76547134	0.02594322	0.7639519	465.5572	0	15.778595						124	5	3	NaN	NaN	NaN	0.45297	1	13239	13239		14.425	10.176	1	16282			32476	5290	18766	19281	25921	25921					-0.03445843306280949
YRTCFKTMA	9	Unmodified						0	0	0		NAA25-SLC25A21|1|fusion;NAA25-SLC25A21|2|fusion;nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	NAA25-SLC25A21|1|fusion	NAA25-SLC25A21|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	374.180783	1119.52052	1.6553	0.00061939	-2.8972	-0.0010841	-1.2419	-0.00046468	374.17958482523767	16.086	0.047943	16.086	16.062	16.11	0	1419	46	0.76361835	0.027797818	0.76361835	464.4302		16.906525	0.031652	0.0010045	-0.00016677	NaN	14.425	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8257.4			32477	5290	18766	19281							-0.03445843306280949
YRTDIGLPHC	10	Unmodified	_YRTDIGLPHC_					0	0	0		ENST00000532654.5_1_11:78775723-78781043:-|nuORF;ENSG00000149256|ENST00000278550|TENM4	ENST00000532654.5_1_11:78775723-78781043:-|nuORF	ENST00000532654.5_1_11:78775723-78781043:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	392.1939690117334	3	392.193969	1173.56008	1.6355	0.00064145	2.2679	0.00088946	3.9035	0.0015309	392.1950161954354	13.445	0.09604	13.445	13.421	13.517	0	1467	31	0.7339432	0.018563092	0.7339432	446.1322	0	11.283691						73	5	2	NaN	NaN	NaN	0.5081	1	15599	15599		10.965	0.72139	1	8068.3			32478	3664	18767	19282	25922	25922					-0.019760000312089687
YRVTPCRV	8	Unmodified	_YRVTPCRV_					0	0	0			REV__ENST00000563749.1_1_16:89627605-89627911:+|nuORF	REV__ENST00000563749.1_1_16:89627605-89627911:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	497.26856142515	2	497.268561	992.52257	1.8932	0.00094144	-5.7483	-0.0028584	-3.8551	-0.001917	497.26585437145513	17.165	0.14397	17.165	17.141	17.285	0	1539	142	0.68933374	0.08737451	0.68933374	279.938	0	35.482727						345	7	2	NaN	NaN	NaN	0.83582	1	8320	8320		4.4131	1.9516	1	33856	+		32479	10464	18768	19283	25923	25923					0.026009534938111756
YRWGHAWKW	9	Unmodified	_YRWGHAWKW_					0	0	0			REV__ENST00000409887.3_1_17:16346566-16346632:-|nuORF	REV__ENST00000409887.3_1_17:16346566-16346632:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	430.5490749681667	3	430.549075	1288.6254	1.1739	0.00050544	4.9396	0.0021268	6.1136	0.0026322	430.55141515199	13.325	0.071912	13.315	13.267	13.339	-0.010098	1374	31	0.791392	0.018500745	0.7898726	480.5543	0	11.234161						60	4	2	NaN	NaN	NaN	0.47587	1	17742	17742		6.4299	2.181	1	6105.2	+		32480	12062	18769	19284	25924	25924					-0.007372177232127797
YSADSAQEASP	11	Unmodified	_YSADSAQEASP_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	563.23837512125	2	563.238375	1124.4622	1.0115	0.00056973	-4.6846	-0.0026386	-3.6731	-0.0020688	563.2355137296086	32.948	0.096504	32.945	32.897	32.993	-0.0024757	1236	58	0.876284	0.034971297	0.8747646	355.287	0	14.179016						154	5	3	NaN	NaN	NaN	0.54514	1	13428	13428		16.858	2.8167	1	27172			32481	3767	18770	19285	25925	25925					-0.0950553014624802
YSASDSCSPPQ	11	Unmodified	_YSASDSCSPPQ_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.2269531552	2	571.226953	1140.43935	0.92056	0.00052585	-9.0698	-0.0051809	-8.1492	-0.0046551	571.2228503399733	32.948	0.21706	32.945	32.873	33.09	-0.0024757	1236	82	0.876284	0.049706757	0.8747646	355.2267	0	20.150055						457	10	5	NaN	NaN	NaN	0.50669	1	13984	13984		18.233	4.1919	1	90183			32482	4463	18771	19286	25926	25926					-0.1252487253534582
YSATSIDLS	9	Unmodified	_YSATSIDLS_					0	0	0		ENST00000507005.1_1_6:146350692-146480734:+|nuORF;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	478.73219732109993	2	478.732197	955.449842	1.2094	0.000579	-1.6981	-0.00081293	-0.48866	-0.00023394	478.731766297377	22.163	0.16867	22.149	22.005	22.173	-0.013731	1299	43	0.8375814	0.025831044	0.83606195	340.3216	0	10.495544						154	8	2	NaN	NaN	NaN	0.29681	1	7067	7067		19.118	8.5134	1	45041			32483	3791	18772	19287	25927	25927					-0.02966521818621004
YSATSIDLS	9	Unmodified						0	0	0		ENST00000507005.1_1_6:146350692-146480734:+|nuORF;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	ENST00000507005.1_1_6:146350692-146480734:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	478.732197	955.449842	1.7172	0.00082208	-0.88807	-0.00042515	0.82913	0.00039693	478.73228550950574	22.139	0.12059	22.139	22.019	22.139	0	1299	49	0.8375814	0.029521227	0.8375814	340.3216		11.994904	-0.0049822	0.00051968	0.00075972	NaN	19.118	133	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30817			32484	3791	18772	19287							-0.02966521818621004
YSCRYYDFSI	10	Unmodified	_YSCRYYDFSI_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.78443824435	2	658.784438	1315.55432	1.0725	0.00070657	1.2403	0.00081707	2.3128	0.0015236	658.784775805055	29.424	0.24129	29.417	29.2	29.441	-0.0077209	1140	37	0.93509084	0.022016883	0.9335714	378.4623	0	8.91095						170	11	2	NaN	NaN	NaN	0.62092	1	18193	18193		13.463	0	1	26129			32485	3592	18773	19288	25928	25928					-0.09083143333555199
YSDCATQHEF	10	Unmodified	_YSDCATQHEF_					0	0	0			REV__nc|ENSG00000135374|Q9UKW6-3|ELF5	REV__nc|ENSG00000135374|Q9UKW6-3|ELF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.7349453628	2	600.734945	1199.45534	0.50865	0.00030557	-9.086	-0.0054583	-8.5774	-0.0051527	601.2306669009225	33.961	0.21724	33.96	33.911	34.129	-0.0012474	1212	61	0.8910048	0.036778092	0.88948536	360.9818	0	14.900269						240	10	4	NaN	NaN	NaN	0.70677	1	15792	15792		7.5876	0.72439	1	25306	+		32486	9614	18774	19289	25929	25929					-0.13641166298452845
YSDFRISDL	9	Unmodified	_YSDFRISDL_					0	0	0		tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.2720209733501	2	558.272021	1114.52949	2.1423	0.001196	6.4695	0.0036118	8.6118	0.0048077	558.2757982319938	24.26	0.19311	24.248	24.224	24.417	-0.012749	1227	229	0.88180584	0.13989317	0.8802864	357.5643	0	56.725403						889	9	6	NaN	NaN	NaN	0.03618	1	13071	13071		52.78	2.8184	1	874630			32487	14009	18775	19290	25930	25930					-0.023194551446067635
YSDKIKSYM	9	Unmodified	_YSDKIKSYM_					0	0	0		tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.77862458495	2	567.778625	1133.5427	1.8455	0.0010478	3.5613	0.002022	5.4068	0.0030699	567.7808683339895	24.671	0.072342	24.671	24.623	24.695	0	1218	61	0.8873258	0.03679794	0.8873258	359.72888	0	14.918182						141	4	2	NaN	NaN	NaN	0.35794	1	14222	14222		15.463	1.0377	1	145850			32488	13861	18776	19291	25931	25931					-0.018733403569058282
YSDLAEFLETE	11	Unmodified	_YSDLAEFLETE_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.53460249793335	3	439.534602	1315.58198	1.2275	0.00053951	-4.9275	-0.0021658	-3.7001	-0.0016263	439.532763125133	24.285	0.26537	24.285	24.237	24.502	0	1383	58	0.7858409	0.03516102	0.7858409	477.08	0	21.34607						530	12	6	NaN	NaN	NaN	0.48069	1	19037	19037		10.204	0	1	283300			32489	2241	18777	19292	25932	25932					-0.06318961592319283
YSDPESYLTEL	11	Unmodified	_YSDPESYLTEL_					0	0	0			REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.7982655136001	2	658.798266	1315.58198	2.1067	0.0013879	-4.4505	-0.002932	-2.3438	-0.0015441	658.7955870556073	26.215	0.28956	26.204	26.131	26.421	-0.011137	1119	73	0.9479278	0.04399103	0.94640833	383.65778	0	17.804626						596	13	5	NaN	NaN	NaN	0.059285	1	18198	18198		47.482	5.1639	1	213150	+		32490	10120	18778	19293	25933	25933					-0.06318961592319283
YSDPESYLTEL	11	Unmodified						0	0	0			REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	REV__PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	658.798266	1315.58198	2.1067	0.0013879	-4.4505	-0.002932	-2.3438	-0.0015441	658.7955870556073	26.215	0.28956	26.204	26.131	26.421	-0.011137	1119	73	0.9479278	0.04399103	0.94640833	383.65778		17.804626	-0.0056872	3.1871E-05	-0.00075972	NaN	47.482	596	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213150	+		32491	10120	18778	19293							-0.06318961592319283
YSDQPEIAL	9	Unmodified	_YSDQPEIAL_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1035.4993173412997	1	1035.49932	1034.49204	1.5	0.0015532	0.64045	0.00066319	2.1404	0.0022164	1035.5004816319915	24.767	0.16891	24.767	24.695	24.864	0	216	52	1.4908947	0.030177712	1.4908947	302.56158	0	6.1242676						121	8	2	NaN	NaN	NaN	0.42817	1	9963	9963		12.57	1.9647	1	9828.9			32492	7973	18779	19294	25934	25934					-0.023825464102628757
YSDQPEIAL	9	Unmodified	_YSDQPEIAL_					0	0	0		nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2|TTC8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.4993173412997	1	1035.49932	1034.49204	1.3663	0.0014148	0.10597	0.00010974	1.4723	0.0015245	1035.499335424666	24.767	0.096489	24.755	24.731	24.827	-0.012392	216	58	1.4908947	0.03373158	1.4893752	302.56158	0	6.8454895						105	5	2	NaN	NaN	NaN	0.070055	1	9754	9754		40.154	18.319	1	8916.7			32493	7973	18779	19294	25935	25935					-0.023825464102628757
YSDSYLVF	8	Unmodified	_YSDSYLVF_					0	0	0		ENSG00000198121|ENST00000683809|LPAR1;nc|ENSG00000198121|Q92633-2|LPAR1	ENSG00000198121|ENST00000683809|LPAR1	ENSG00000198121|ENST00000683809|LPAR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	993.4563898941	1	993.45639	992.449113	1.4374	0.001428	1.4934	0.0014836	2.9308	0.0029117	993.457402270156	26.577	0.14478	26.566	26.518	26.663	-0.010645	243	70	1.4749115	0.040863395	1.473392	299.4847	0	8.297424						227	7	3	NaN	NaN	NaN	0.14214	1	8132	8132		55.947	11.7	1	30708			32494	5757	18780	19295	25936	25936					-0.047413164676754604
YSELREDIQ	9	Unmodified	_YSELREDIQ_					0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|76|2|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.7802101462	2	576.78021	1151.54587	1.8772	0.0010828	-8.7028	-0.0050196	-6.8256	-0.0039369	576.7750917376371	18.53	0.16792	18.516	18.468	18.636	-0.01395	1236	40	0.876284	0.023930311	0.8747646	355.1858	0	9.699707						110	8	2	NaN	NaN	NaN	0.35794	1	14350	14350		15.463	2.893	1	10783			32495	7853	18781	19296	25937	25937					-0.023843739785206708
YSELREDIQ	9	Unmodified						0	0	0		nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|76|2|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense	nc|ENSG1000|Q9UN81|L1_ORF1	nc|ENSG1000|Q9UN81|L1_ORF1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.78021	1151.54587	2.2999	0.0013265	-9.6133	-0.0055448	-7.3134	-0.0042182	576.7747789567019	18.508	0.1438	18.508	18.412	18.556	0	1239	64	0.87444305	0.038639963	0.87444305	354.43958		15.661987	-0.0036552	-0.00053107	-0.00016078	NaN	15.463	133	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14563			32496	7853	18781	19296							-0.023843739785206708
YSEQAPLL	8	Unmodified	_YSEQAPLL_					0	0	0			REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	920.4723743093001	1	920.472374	919.465098	1.0706	0.0009855	0.19227	0.00017698	1.2629	0.0011625	920.4729561267181	28.918	0.16893	28.909	28.885	29.054	-0.0083504	327	88	1.425088	0.051687837	1.4235686	289.6824	0	10.506744						341	8	3	NaN	NaN	NaN	0.528	1	6272	6272		29.598	0	1	52171	+		32497	12927	18782	19297	25938	25938					0.002143897692462815
YSERFCERS	9	Unmodified	_YSERFCERS_					0	0	0			REV__ENST00000357039.8_1_8:77912226-77912337:-|nuORF	REV__ENST00000357039.8_1_8:77912226-77912337:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7587548101001	2	588.758755	1175.50296	1.3713	0.00080737	-3.9456	-0.002323	-2.5743	-0.0015156	588.7567336876646	32.563	0.14481	32.563	32.514	32.659	0	1227	70	0.88180584	0.042333663	0.88180584	357.3377	0	17.15503						193	7	2	NaN	NaN	NaN	0.53317	1	15650	15650		8.2448	1.2605	1	20738	+		32498	11822	18783	19298	25939	25939					-0.07777467307596453
YSETLKKADG	10	Unmodified	_YSETLKKADG_					0	0	0			REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	556.2851283486	2	556.285128	1110.5557	1.2031	0.00066926	1.5746	0.00087594	2.7777	0.0015452	556.285260688139	24.647	0.14474	24.647	24.574	24.719	0	1230	73	0.8799654	0.044181406	0.8799654	356.83365	0	17.915955						256	7	2	NaN	NaN	NaN	0.60686	1	13304	13304		14.425	2.3763	1	41961	+		32499	8351	18784	19299	25940	25940					0.004848140268450152
YSETLKKADG	10	Unmodified						0	0	0			REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.285128	1110.5557	1.2031	0.00066926	1.5746	0.00087594	2.7777	0.0015452	556.285260688139	24.647	0.14474	24.647	24.574	24.719	0	1230	73	0.8799654	0.044181406	0.8799654	356.83365		17.915955	-0.13847	0.0045428	0.0053622	NaN	14.425	256	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41961	+		32500	8351	18784	19299							0.004848140268450152
YSETLKKADG	10	Unmodified						0	0	0			REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	REV__PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	556.285128	1110.5557	2.2343	0.0012429	-5.6285	-0.003131	-3.3942	-0.0018881	556.2840783518093	24.936	0.072393	24.924	24.875	24.948	-0.012392	1245	37	0.87076044	0.022104979	0.869241	353.101		8.963776	0.13847	-0.0034711	-0.0053622	NaN	14.425	36	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2857.4	+		32501	8351	18784	19299							0.004848140268450152
YSFAYPYGIF	10	Unmodified	_YSFAYPYGIF_					0	0	0		tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	tr|U7SQI1|U7SQI1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01647PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.28968241025	2	614.289682	1226.56481	1.2028	0.00073887	5.7408	0.0035265	6.9436	0.0042654	614.7931972923279	30.125	0.02413	30.125	30.125	30.149	0	1128	52	0.9424274	0.03118217	0.9424274	381.71912	0	12.629974						47	2	2	NaN	NaN	NaN	0.53991	1	17140	17140		17.799	4.7961	1	9602.8			32502	13809	18785	19300	25941	25941					-0.03940792616822364
YSFGRWNL	8	Unmodified	_YSFGRWNL_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	521.75888380835	2	521.758884	1041.50321	1.1253	0.00058715	7.2493	0.0037824	8.3746	0.0043695	521.7628370063592	28.314	0.16887	28.305	28.233	28.402	-0.0089779	1293	64	0.84127116	0.038719356	0.8397517	341.4199	0	15.713776						182	8	3	NaN	NaN	NaN	0.65542	1	10065	10065		21.835	4.036	1	18116	+		32503	8891	18786	19301	25942	25942					-0.01587679525459862
YSFLDYVM	8	Unmodified	_YSFLDYVM_					0	0	0		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1037.4648460903998	1	1037.46485	1036.45757	1.6596	0.0017218	0.57003	0.00059139	2.2296	0.0023132	1037.4653311512739	34.348	0.21703	34.348	34.3	34.517	0	171	70	1.5174994	0.040763736	1.5174994	307.95306	0	8.272369						441	10	4	NaN	NaN	NaN	0.09307	1	10051	10051		65.672	36.776	1	100730			32504	5979	18787	19302	25943	25943					-0.05920085822708643
YSFLDYVM	8	Unmodified	_YSFLDYVM_					0	0	0		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1037.4648460903998	1	1037.46485	1036.45757	1.2642	0.0013116	1.0406	0.0010795	2.3048	0.0023911	1037.4661805026872	34.347	0.28923	34.346	34.298	34.587	-0.0012474	168	70	1.5192716	0.040755033	1.5177522	308.31268	0	8.27063						486	13	4	NaN	NaN	NaN	0.27293	1	9842	9842		44.247	18.495	1	103930			32505	5979	18787	19302	25944	25944					-0.05920085822708643
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(110)	0	0	1		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1053.4597607124997	1	1053.45976	1052.45248	2.7033	0.0028479	-1.533	-0.0016149	1.1704	0.001233	1053.4576872709654	29.98	0.31376	29.98	29.908	30.222	0	180	133	1.5121819	0.078069806	1.5121819	306.81268	0	15.839905						899	14	5	NaN	NaN	NaN	0.025282	1	10718	10718		108.51	55.186	1	230670			32506	5979	18787	19303	25945	25945		609			-0.07164389685340211
YSFLDYVM	8	Oxidation (M)	_YSFLDYVM(Oxidation (M))_		YSFLDYVM(1)		YSFLDYVM(68)	0	0	1		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1053.4597607124997	1	1053.45976	1052.45248	1.6584	0.001747	-1.0248	-0.0010795	0.63362	0.00066749	1053.4588292175	29.955	0.26544	29.949	29.901	30.166	-0.0064106	177	133	1.5139546	0.07806146	1.5124352	307.17236	0	15.838226						957	12	5	NaN	NaN	NaN	0.084194	1	10497	10497		68.108	8.6632	1	240570			32507	5979	18787	19303	25946	25946		609			-0.07164389685340211
YSFRHISF	8	Unmodified	_YSFRHISF_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7667088404501	2	528.766709	1055.51886	1.4784	0.00078174	-4.9902	-0.0026386	-3.5117	-0.0018569	529.267249194616	28.967	0.096582	28.967	28.943	29.039	0	1275	43	0.85233563	0.025808692	0.85233563	345.8504	0	10.472351						82	5	2	NaN	NaN	NaN	0.83913	1	10882	10882		3.9685	1.1833	1	5590.5			32508	5261	18788	19304	25947	25947					-0.006673930083934465
YSFRHISF	8	Unmodified						0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.766709	1055.51886	1.331	0.00070381	-4.2789	-0.0022626	-2.9479	-0.0015587	529.2652503051667	28.942	0.048271	28.933	28.909	28.958	-0.0083485	1275	49	0.85233563	0.029492497	0.8508162	345.8504		11.967102	-0.016619	0.00035542	-0.00075972	NaN	3.9685	64	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4147.5			32509	5261	18788	19304							-0.006673930083934465
YSFSHVHML	9	Unmodified	_YSFSHVHML_					0	0	0			REV__ENSG00000198198|ENST00000634258|SZT2	REV__ENSG00000198198|ENST00000634258|SZT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	374.17965986266665	3	374.17966	1119.51715	2.3562	0.00088165	-1.5456	-0.00057832	0.81064	0.00030332	374.1794313855162	15.63	0.3599	15.63	15.606	15.966	0	1413	244	0.7673241	0.15001124	0.7673241	466.68405	0	91.23636						1417	16	6	NaN	NaN	NaN	0.55027	1	13641	13641		4.3102	0.73073	1	1458900	+		32510	11170	18789	19305	25948	25948					-0.037827700886509774
YSFYYGNHCS	10	Unmodified	_YSFYYGNHCS_					0	0	0			REV__ENSG00000237038|ENST00000527080|USP17L8	REV__ENSG00000237038|ENST00000527080|USP17L8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	620.7400307407	2	620.740031	1239.46551	1.2111	0.00075175	4.5754	0.0028401	5.7864	0.0035919	620.7427843871676	20.333	0.096176	20.333	20.309	20.405	0	1155	67	0.92591566	0.04038602	0.92591566	374.9878	0	16.356018						220	5	3	NaN	NaN	NaN	0.66626	1	17503	17503		10.36	1.3982	1	23574	+		32511	11329	18790	19306	25949	25949					-0.144645585732178
YSGFICEMYI	10	Unmodified	_YSGFICEMYI_					0	0	0		ENST00000485407.1_1_13:39616195-39618420:+|nuORF	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2670354434	2	613.267035	1224.51952	0.80668	0.00049471	0.057649	3.5354E-05	0.86433	0.00053006	613.2675543782286	34.709	0.096367	34.708	34.684	34.78	-0.00064468	1161	67	0.9222442	0.040372968	0.92072475	373.55112	0	16.352905						147	5	3	NaN	NaN	NaN	0.64158	1	16396	16396		12.049	4.4611	1	11831			32512	7234	18791	19307	25950	25950					-0.08376102465877011
YSGGGGGC	8	Unmodified	_YSGGGGGC_					0	0	0			REV__ENSG00000189182|ENST00000341809|KRT77	REV__ENSG00000189182|ENST00000341809|KRT77	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	657.2297011969	1	657.229701	656.222425	1.3419	0.00088191	-2.8934	-0.0019016	-1.5515	-0.0010197	657.2269921385019	26.311	0.24128	26.3	26.276	26.517	-0.011135	795	70	1.1447623	0.0416646	1.1432428	234.07199	0	8.519257						243	11	2	NaN	NaN	NaN	0.84945	1	2105	2105		0	0	1	18331	+	+	32513	8285	18792	19308	25951	25951					-0.11943758507595703
YSGKGGGA	8	Unmodified	_YSGKGGGA_					0	0	0			REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	696.331129801	1	696.33113	695.323853	1.4315	0.00099682	-1.4731	-0.0010257	-0.041529	-2.8918E-05	696.3301268395351	14.333	0.28797	14.333	14.261	14.549	0	1362	73	0.79879075	0.044397056	0.79879075	163.14287	0	9.067535						463	13	3	NaN	NaN	NaN	0.84945	1	3143	3143		0	0	1	78863	+		32514	12916	18793	19309	25952	25952					-0.03599563813384066
YSGKGGGA	8	Unmodified						0	0	0			REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	696.33113	695.323853	1.4315	0.00099682	-1.4731	-0.0010257	-0.041529	-2.8918E-05	696.3301268395351	14.333	0.28797	14.333	14.261	14.549	0	1362	73	0.79879075	0.044397056	0.79879075	163.14287		9.067535	0.0060496	-0.00049335	0.00075972	NaN	0	463	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78863	+		32515	12916	18793	19309							-0.03599563813384066
YSGKGGGA	8	Unmodified						0	0	0			REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	696.33113	695.323853	1.06	0.00073812	-0.098957	-6.8907E-05	0.96106	0.00066921	696.3309442750742	14.332	0.2875	14.321	14.249	14.537	-0.011218	1362	76	0.79879075	0.046244442	0.7972713	163.14287		9.4448395	-0.0060496	0.00046349	-0.00075972	NaN	0	479	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89615	+		32516	12916	18793	19309							-0.03599563813384066
YSGTALLNF	9	Unmodified	_YSGTALLNF_					0	0	0		nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-3|TMEM245	nc|ENSG00000106771|Q9H330-3|TMEM245	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	985.4989234108001	1	985.498923	984.491647	1.8113	0.001785	-1.4103	-0.0013899	0.40095	0.00039513	985.498693875908	29.546	0.12066	29.546	29.498	29.618	0	285	64	1.4500183	0.037353635	1.4500183	294.4627	0	7.585602						98	6	2	NaN	NaN	NaN	0.25448	1	8026	8026		21.835	4.036	1	6836.8			32517	1617	18794	19310	25953	25953					-0.0012192133942789951
YSGTALLNF	9	Unmodified						0	0	0		nc|ENSG00000106771|Q9H330-3|TMEM245;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-3|TMEM245	nc|ENSG00000106771|Q9H330-3|TMEM245	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	985.498923	984.491647	1.7423	0.001717	-2.0671	-0.0020372	-0.32488	-0.00032017	985.4952016304017	29.521	0.072384	29.514	29.514	29.586	-0.0070648	282	46	1.4517976	0.026689649	1.4502782	294.82404		5.4200134	-0.016002	-0.00038443	0.00012994	NaN	21.835	68	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5524			32518	1617	18794	19310							-0.0012192133942789951
YSGVLITL	8	Unmodified	_YSGVLITL_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562	1	865.502946	864.49567	2.0189	0.0017474	-0.70658	-0.00061155	1.3123	0.0011358	865.5014987248795	30.125	0.1207	30.125	30.077	30.198	0	411	61	1.3751161	0.0357399	1.3751161	279.78647	0	7.271759						181	6	3	NaN	NaN	NaN	0.14214	1	5602	5602		55.947	14.487	1	24272			32519	6014	18795	19311	25954	25954					0.058001681542691585
YSGVLITL	8	Unmodified	_YSGVLITL_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562	1	865.502946	864.49567	0.9082	0.00078605	-0.13392	-0.00011591	0.77429	0.00067015	865.5023279710979	30.124	0.14478	30.118	30.07	30.214	-0.0064106	408	58	1.3769034	0.03395474	1.375384	280.15012	0	6.908539						186	7	3	NaN	NaN	NaN	0.14214	1	5461	5461		55.947	5.9148	1	24256			32520	6014	18795	19311	25955	25955					0.058001681542691585
YSICYLKKPSF	11	Unmodified	_YSICYLKKPSF_					0	0	0		ENST00000379997.7_1_9:27561302-27561452:-|nuORF	ENST00000379997.7_1_9:27561302-27561452:-|nuORF	ENST00000379997.7_1_9:27561302-27561452:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	674.85212387905	2	674.852124	1347.68969	1.395	0.00094142	3.2862	0.0022177	4.6812	0.0031591	674.8543460755453	22.525	0.12058	22.525	22.501	22.621	0	1077	34	0.9735726	0.020133197	0.9735726	393.93948	0	8.146576						128	6	3	NaN	NaN	NaN	0.71279	1	19516	19516		6.6174	1.6005	1	13375			32521	6728	18796	19312	25956	25956					0.029757565280533527
YSIKNIEEGA	10	Unmodified	_YSIKNIEEGA_					0	0	0			REV__PTPN13|p.E2016K|1|0.09|ENSG00000163629|chr4:86784486-86784486|G/A|missense_variant	REV__PTPN13|p.E2016K|1|0.09|ENSG00000163629|chr4:86784486-86784486|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	562.2851283486	2	562.285128	1122.5557	2.1538	0.0012111	2.4857	0.0013976	4.6395	0.0026087	562.2858246051654	26.215	0.16891	26.215	26.119	26.288	0	1200	67	0.89836043	0.040455878	0.89836043	364.24524	0	16.403046						141	8	3	NaN	NaN	NaN	0.64611	1	13792	13792		11.739	1.6873	1	14067	+		32522	13302	18797	19313	25957	25957					-0.0006718597314829822
YSIKNIEEGA	10	Unmodified						0	0	0			REV__PTPN13|p.E2016K|1|0.09|ENSG00000163629|chr4:86784486-86784486|G/A|missense_variant	REV__PTPN13|p.E2016K|1|0.09|ENSG00000163629|chr4:86784486-86784486|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	562.285128	1122.5557	2.1538	0.0012111	2.4857	0.0013976	4.6395	0.0026087	562.2858246051654	26.215	0.16891	26.215	26.119	26.288	0	1200	67	0.89836043	0.040455878	0.89836043	364.24524		16.403046	0.0056872	0.0026969	0.00075972	NaN	11.739	141	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14067	+		32523	13302	18797	19313							-0.0006718597314829822
YSILEGQPYF	10	Unmodified	_YSILEGQPYF_					0	0	0		ENST00000569128.1_1_16:65025665-65032510:-|nuORF;nc|ENSG00000140937|P55287-2|CDH11;ENSG00000140937|ENST00000268603|CDH11;ENSG00000150394|ENST00000577390|CDH8	ENST00000569128.1_1_16:65025665-65032510:-|nuORF	ENST00000569128.1_1_16:65025665-65032510:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.7978715831	2	608.797872	1215.58119	1.304	0.00079389	-10.406	-0.0063351	-9.1018	-0.0055412	608.7917437439581	26.529	0.14483	26.529	26.529	26.674	0	1110	97	0.95342636	0.058692634	0.95342636	386.213	0	23.775146						154	7	3	NaN	NaN	NaN	0.44412	1	16867	16867		21.771	3.8014	1	23821			32524	3294	18798	19314	25958	25958					-0.01797711450717543
YSIQPFFPS	9	Unmodified	_YSIQPFFPS_					0	0	0		ENSG00000164893|ENST00000297524|SLC7A13;nc|ENSG00000164893|Q8TCU3-2|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1085.5302235391998	1	1085.53022	1084.52295	1.1665	0.0012662	2.8253	0.003067	3.9918	0.0043332	1085.5331827384807	32.755	0.24133	32.752	32.679	32.92	-0.0031013	69	103	1.5776473	0.060077786	1.5761279	319.97272	0	12.184753						568	11	4	NaN	NaN	NaN	0.030696	1	11847	11847		58.2	8.2383	1	108780			32525	4352	18799	19315	25959	25959					-0.015933483053458986
YSIYVDLV	8	Unmodified	_YSIYVDLV_					0	0	0			REV__ENST00000306602.2_1_4:76942454-76942529:-|nuORF	REV__ENST00000306602.2_1_4:76942454-76942529:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	486.2578509656	2	486.257851	970.501149	1.8207	0.00088531	7.7105	0.0037493	9.5311	0.0046346	486.2606350235519	22.405	0.0963	22.405	22.38	22.477	0	1359	70	0.8006399	0.042508066	0.8006399	325.24014	0	17.267822						150	5	3	NaN	NaN	NaN	0.72043	1	7618	7618		17.78	0	1	16457	+		32526	11677	18800	19316	25960	25960					0.014718469461058703
YSKTCVRLS	9	Unmodified	_YSKTCVRLS_					0	0	0			REV__ENST00000301068.10_1_12:49460047-49460429:-|nuORF	REV__ENST00000301068.10_1_12:49460047-49460429:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7789589359501	2	528.778959	1055.54336	1.7423	0.0009213	-8.9724	-0.0047444	-7.2301	-0.0038231	528.7736435917666	23.875	0.072319	23.875	23.851	23.923	0	1287	25	0.8449601	0.014751017	0.8449601	342.85757	0	5.9854736						33	4	2	NaN	NaN	NaN	0.39244	1	10892	10892		14.042	0	1	3433.3	+		32527	11653	18801	19317	25961	25961					0.017814990828355803
YSLDPQYGSA	10	Unmodified	_YSLDPQYGSA_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1100.4894809365	1	1100.48948	1099.4822	1.4324	0.0015763	1.5775	0.001736	3.0099	0.0033123	1100.4910697873768	27.084	0.19305	27.084	27.06	27.253	0	114	67	1.5511382	0.038915038	1.5511382	314.54245	0	7.891266						161	9	2	NaN	NaN	NaN	0.41164	1	12814	12814		23.118	6.2593	1	18564	+		32528	11115	18802	19318	25962	25962					-0.06355734415592451
YSLEGSGN	8	Unmodified	_YSLEGSGN_					0	0	0			REV__ENSG00000165821|ENST00000537235|SALL2	REV__ENSG00000165821|ENST00000537235|SALL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	826.3577384820001	1	826.357738	825.350462	1.6518	0.0013649	3.6691	0.003032	5.3208	0.0043969	826.3608926467643	24.598	0.14474	24.598	24.574	24.719	0	516	43	1.3124412	0.02511406	1.3124412	267.2326	0	5.1135864						94	7	2	NaN	NaN	NaN	0.69898	1	5090	5090		19.118	0	1	7191.1	+		32529	10402	18803	19319	25963	25963					-0.06919919712709088
YSLIDKGRL	9	Unmodified	_YSLIDKGRL_					0	0	0			REV__nc|ENSG00000113269|Q86XS8-2|RNF130	REV__nc|ENSG00000113269|Q86XS8-2|RNF130	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	355.5414745923	3	355.541475	1063.60259	1.5956	0.00056731	-1.6274	-0.00057862	-0.0318	-1.1306E-05	355.5411109809375	20.477	0.12027	20.463	20.415	20.535	-0.014141	1470	55	0.7320868	0.033417165	0.73056734	445.5369	0	20.337158						196	6	4	NaN	NaN	NaN	0.18779	1	11038	11038		23.086	3.7494	1	36253	+		32530	9145	18804	19320	25964	25964					0.07333718368658992
YSLIPDLSF	9	Unmodified	_YSLIPDLSF_					0	0	0		ENST00000486234.1_1_2:74754275-74754965:-|nuORF	ENST00000486234.1_1_2:74754275-74754965:-|nuORF	ENST00000486234.1_1_2:74754275-74754965:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5455392523997	1	1054.54554	1053.53826	1.8822	0.0019848	-8.9586	-0.0094472	-7.0764	-0.0074624	1054.5358510810843	32.804	0.26543	32.804	32.659	32.925	0	105	130	1.5564433	0.0760895	1.5564433	315.7889	0	15.437897						380	12	3	NaN	NaN	NaN	0.094712	1	10793	10793		36.586	5.0254	1	86107			32531	7238	18805	19321	25965	25965					0.013635184918257437
YSLLEHWCA	9	Unmodified	_YSLLEHWCA_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.2578593531001	2	561.257859	1120.50117	1.2082	0.0006781	-5.5592	-0.0031202	-4.3511	-0.0024421	561.2542563671634	29.545	0.21714	29.538	29.514	29.731	-0.0070648	1218	73	0.8873258	0.04417187	0.8858064	359.77924	0	17.910095						391	10	4	NaN	NaN	NaN	0.31737	1	13290	13290		17.799	3.7574	1	82249	+		32532	11211	18806	19322	25966	25966					-0.05426476325533258
YSLLGVSK	8	Unmodified	_YSLLGVSK_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	866.4981951293001	1	866.498195	865.490919	1.3417	0.0011626	7.7708	0.0067333	9.1124	0.0078959	866.5054127856598	36.974	0.096085	36.976	36.904	37	0.0022507	501	40	1.3214091	0.023311496	1.3198897	268.85416	0	4.742981						79	5	2	NaN	NaN	NaN	0.84562	1	5471	5471		2.1763	0	1	5480			32533	865	18807	19323	25967	25967					0.052792840115330364
YSLLYDGFP	9	Unmodified	_YSLLYDGFP_					0	0	0		nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.514239124	1	1074.51424	1073.50696	0.82557	0.00088709	-1.0955	-0.0011771	-0.26989	-0.00029	1075.5146804131032	33.43	0.048267	33.428	33.404	33.452	-0.0018501	135	103	1.5387528	0.060198903	1.5372335	312.12454	0	12.210876						164	3	2	NaN	NaN	NaN	0.49672	1	11397	11397		9.746	2.8828	1	17759			32534	710	18808	19324	25968	25968					-0.02685054542234866
YSLLYDGFP	9	Unmodified	_YSLLYDGFP_					0	0	0		nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1074.514239124	1	1074.51424	1073.50696	0.90119	0.00096834	-0.25521	-0.00027423	0.64597	0.00069411	1074.5149073082653	33.358	0.16892	33.355	33.186	33.355	-0.0024796	144	112	1.533442	0.06553483	1.5319226	311.04727	0	13.293243						244	8	2	NaN	NaN	NaN	0.49672	1	11398	11398		9.746	2.8828	1	22183			32535	710	18808	19324	25969	25969					-0.02685054542234866
YSLLYDGFP	9	Unmodified						0	0	0		nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1074.51424	1073.50696	0.88944	0.00095571	-0.72077	-0.00077447	0.16867	0.00018124	1075.5152526111638	33.383	0.09655	33.383	33.383	33.48	0	141	103	1.5352125	0.06021154	1.5352125	311.4064		12.21347	-0.022527	0.00018788	-0.0010105	NaN	9.746	213	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19241			32536	710	18808	19324							-0.02685054542234866
YSLLYDGFP	9	Unmodified						0	0	0		nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98-3|STAG3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1074.51424	1073.50696	0.88999	0.00095631	0.063666	6.841E-05	0.95365	0.0010247	1075.516726284973	33.311	0.096527	33.311	33.238	33.335	0	150	106	1.5299006	0.06198585	1.5299006	310.32892		12.573364	-0.022224	0.00018268	-0.001011	NaN	9.746	256	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18530			32537	710	18808	19324							-0.02685054542234866
YSLMHDVYGML	11	Unmodified	_YSLMHDVYGML_					0	0	0		SIK3-MRPS9|1|fusion;ENSG00000135972|ENST00000258455|MRPS9;MRPS9|p.T189Nfs*14|1|0.22|ENSG00000135972|chr2:105089053-105089054|-/A|frameshift_variant	SIK3-MRPS9|1|fusion	SIK3-MRPS9|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	443.5386364266666	3	443.538636	1327.59408	1.132	0.0005021	-4.2221	-0.0018727	-3.0901	-0.0013706	443.87056749896544	28.556	0.14475	28.547	28.475	28.62	-0.0083504	1437	46	0.7524962	0.027821898	0.75097674	456.7937	0	16.888977						88	7	2	NaN	NaN	NaN	0.69801	1	18359	18359		3.3044	0	1	6160.2			32538	2982	18809	19325	25970	25970					-0.05661339654511721
YSLMRSHDSYF	11	Unmodified	_YSLMRSHDSYF_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.31389417555	2	703.313894	1404.61324	0.88229	0.00062052	-7.3302	-0.0051555	-6.448	-0.0045349	703.3098856090688	29.401	0.096512	29.401	29.353	29.449	0	1071	46	0.977233	0.027445495	0.977233	395.2579	0	11.1008						128	5	3	NaN	NaN	NaN	0.6678	1	20098	20098		9.5705	2.5861	1	11110	+		32539	13237	18810	19326	25971	25971					-0.07288667039233587
YSLSKQCNTH	10	Unmodified	_YSLSKQCNTH_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.7744048743	2	590.774405	1179.53426	2.0274	0.0011977	-9.8374	-0.0058117	-7.81	-0.004614	590.7674489870642	18.125	0.21582	18.125	18.077	18.292	0	1197	43	0.9001988	0.025739074	0.9001988	364.77673	0	10.429932						165	10	3	NaN	NaN	NaN	0.68669	1	15805	15805		8.962	1.2794	1	19045			32540	7895	18811	19327	25972	25972					-0.0483289427352247
YSLSLQILF	9	Unmodified	_YSLSLQILF_					0	0	0		ENST00000558020.1_1_15:101828356-101835383:-|nuORF	ENST00000558020.1_1_15:101828356-101835383:-|nuORF	ENST00000558020.1_1_15:101828356-101835383:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	542.3078751634	2	542.307875	1082.6012	0.88071	0.00047762	-1.828	-0.00099132	-0.94725	-0.0005137	542.3067150546806	37.915	0.24028	37.915	37.843	38.083	0	1212	64	0.8910048	0.038623214	0.8910048	361.4246	0	15.667023						360	11	4	NaN	NaN	NaN	0.01452	1	12107	12107		79.199	3.5003	1	62211			32541	7582	18812	19328	25973	25973					0.06320084279900584
YSLTIFIFDL	10	Unmodified	_YSLTIFIFDL_					0	0	0			REV__nc|ENSG00000205494|A6NMU1|OR52A4P	REV__nc|ENSG00000205494|A6NMU1|OR52A4P	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	616.3340899139001	2	616.33409	1230.65363	0.89129	0.00054933	1.937	0.0011938	2.8283	0.0017431	616.3353849125464	20.573	0.096287	20.573	20.525	20.622	0	1101	25	0.95892316	0.01465416	0.95892316	388.3862	0	5.9353027						50	5	2	NaN	NaN	NaN	0.76548	1	17280	17280		3.5698	0	1	3938	+		32542	13220	18813	19329	25974	25974					0.0475262262286833
YSLTYGVH	8	Unmodified	_YSLTYGVH_					0	0	0			REV__ENSG00000196684|ENST00000613986|HSH2D	REV__ENSG00000196684|ENST00000613986|HSH2D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	470.23216753135	2	470.232168	938.449782	0.8802	0.0004139	2.364	0.0011116	3.2442	0.0015255	470.23256898971454	24.357	0.072393	24.357	24.309	24.381	0	1305	34	0.83389086	0.020301342	0.83389086	338.9091	0	8.2508545						76	4	3	NaN	NaN	NaN	0.8439	1	6781	6781		3.1533	0	1	6904.1	+		32543	11116	18814	19330	25975	25975					-0.021904770279547847
YSNPIKMSLL	10	Unmodified	_YSNPIKMSLL_					0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.3179169209501	2	583.317917	1164.62128	2.0135	0.0011745	4.1325	0.0024106	6.146	0.0035851	583.3200754155234	27.76	0.19306	27.76	27.712	27.905	0	1167	73	0.91857195	0.044095516	0.91857195	372.2769	0	17.870941						299	9	3	NaN	NaN	NaN	0.19179	1	15307	15307		36.235	10.553	1	72243	+		32544	10465	18815	19331	25976	25976					0.045555119482060036
YSNPIKMSLL	10	Unmodified	_YSNPIKMSLL_					0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.3179169209501	2	583.317917	1164.62128	1.2869	0.00075066	3.7655	0.0021965	5.0524	0.0029472	583.3200030196816	27.808	0.16897	27.798	27.75	27.919	-0.009552	1167	73	0.91857195	0.044095516	0.9170525	372.2769	0	17.870941						319	8	3	NaN	NaN	NaN	0.068403	1	14779	14779		50.315	5.6766	1	68942	+		32545	10465	18815	19331	25977	25977					0.045555119482060036
YSNPIKMSLL	10	Unmodified						0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	583.317917	1164.62128	2.0135	0.0011745	4.1325	0.0024106	6.146	0.0035851	583.3200754155234	27.76	0.19306	27.76	27.712	27.905	0	1167	73	0.91857195	0.044095516	0.91857195	372.2769		17.870941	-0.01894	0.00022236	0.00075972	NaN	50.315	299	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72243	+		32546	10465	18815	19331							0.045555119482060036
YSNPIKMSLL	10	Unmodified						0	0	0			REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	REV__KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	583.317917	1164.62128	1.2869	0.00075066	3.7655	0.0021965	5.0524	0.0029472	583.3200030196816	27.808	0.16897	27.798	27.75	27.919	-0.009552	1167	73	0.91857195	0.044095516	0.9170525	372.2769		17.870941	0.01894	-0.00020575	-0.00075972	NaN	50.315	319	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68942	+		32547	10465	18815	19331							0.045555119482060036
YSPEYPGP	8	Unmodified	_YSPEYPGP_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000515251.1_1_4:120376278-120381900:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	909.3988750152	1	909.398875	908.391599	2.4605	0.0022376	-10.628	-0.0096649	-8.1672	-0.0074273	909.3904893618471	19.587	0.072226	19.573	19.573	19.645	-0.014141	1071	43	0.977233	0.025619924	0.97571355	198.68115	0	5.208786						66	4	2	NaN	NaN	NaN	0.84727	1	6085	6085		1.2418	0	1	4014			32548	2326	18816	19332	25978	25978					-0.0662615867323666
YSPFSFPAS	9	Unmodified	_YSPFSFPAS_					0	0	0		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1002.4567242451001	1	1002.45672	1001.44945	2.0853	0.0020904	0.17962	0.00018006	2.2649	0.0022705	1002.45699391916	24.26	0.048265	24.248	24.224	24.272	-0.012749	222	421	1.4873441	0.24909389	1.4858247	301.97205	0	50.572937						766	3	5	NaN	NaN	NaN	0.10956	1	8470	8470		34.439	0.74048	1	366950			32549	4587	18817	19333	25979	25979					-0.05121896747800747
YSPFSFPAS	9	Unmodified						0	0	0		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1002.45672	1001.44945	2.0095	0.0020144	0.58684	0.00058828	2.5963	0.0026027	1002.4573940693755	24.261	0.048231	24.261	24.237	24.285	0	222	463	1.4873441	0.27420795	1.4873441	301.97205		55.671814	0.0065195	0.00023312	0.00075972	NaN	34.439	970	3	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454320			32550	4587	18817	19333							-0.05121896747800747
YSPPPAAT	8	Unmodified	_YSPPPAAT_					0	0	0		ENSG00000136738|ENST00000377524|STAM	ENSG00000136738|ENST00000377524|STAM	ENSG00000136738|ENST00000377524|STAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	803.3933957067999	1	803.393396	802.386119	1.4468	0.0011623	-1.4959	-0.0012018	-0.049125	-3.9467E-05	803.3921753201236	32.9	0.16897	32.9	32.852	33.021	0	1260	67	0.8615505	0.040539026	0.8615505	175.50674	0	8.2582245						186	8	3	NaN	NaN	NaN	0.84945	1	4773	4773		0	0	1	21820			32551	3037	18818	19334	25980	25980					-0.022978374650620026
YSPPPAAT	8	Unmodified	_YSPPPAAT_					0	0	0		ENSG00000136738|ENST00000377524|STAM	ENSG00000136738|ENST00000377524|STAM	ENSG00000136738|ENST00000377524|STAM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	803.3933957067999	1	803.393396	802.386119	1.2794	0.0010278	-1.8073	-0.0014519	-0.5279	-0.00042411	803.3917268993922	32.899	0.12062	32.897	32.873	32.993	-0.0024757	1257	61	0.86339295	0.03685367	0.8618735	175.88205	0	7.507477						163	6	3	NaN	NaN	NaN	0.84945	1	4682	4682		0	0	1	19389			32552	3037	18818	19334	25981	25981					-0.022978374650620026
YSPVGYSA	8	Unmodified	_YSPVGYSA_					0	0	0			REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	REV__CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.19779339775	2	422.197793	842.381034	1.0294	0.00043463	1.8503	0.00078118	2.8797	0.0012158	422.19803816061426	31.863	0.09654	31.863	31.863	31.959	0	1380	34	0.7876915	0.020356357	0.7876915	320.65912	0	8.286804						53	5	2	NaN	NaN	NaN	0.84727	1	5296	5296		1.2418	0.16982	1	4461.4	+		32553	8188	18819	19335	25982	25982					-0.04646141327668829
YSPYFKTI	8	Unmodified	_YSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	509.76584317320004	2	509.765843	1017.51713	1.7675	0.000901	1.2086	0.00061613	2.9761	0.0015171	509.764858614863	21.368	0.19256	21.368	21.296	21.488	0	1290	58	0.84311575	0.035046935	0.84311575	342.2737	0	14.227783						209	9	3	NaN	NaN	NaN	0.63486	1	9274	9274		23.118	8.6926	1	43751		+	32554	187	18820	19336	25983	25983					0.009075531830035288
YSPYFKTI	8	Unmodified	_YSPYFKTI_					0	0	0		ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8	ENSG00000186847|ENST00000167586|KRT14	ENSG00000186847|ENST00000167586|KRT14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.76584317320004	2	509.765843	1017.51713	1.2354	0.00062977	1.7856	0.00091025	3.021	0.00154	509.76565706200785	21.392	0.16849	21.378	21.33	21.499	-0.014006	1290	55	0.84311575	0.03320414	0.8415963	342.2737	0	13.479675						210	8	3	NaN	NaN	NaN	0.54116	1	9095	9095		28.896	3.9346	1	49286		+	32555	187	18820	19336	25984	25984					0.009075531830035288
YSRILNYLF	9	Unmodified	_YSRILNYLF_					0	0	0		ENST00000482131.1_1_1:35827333-35836274:+|nuORF	ENST00000482131.1_1_1:35827333-35836274:+|nuORF	ENST00000482131.1_1_1:35827333-35836274:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.82422371935	2	594.824224	1187.63389	1.0178	0.00060541	2.1017	0.0012502	3.1196	0.0018556	594.8258793494879	28.797	0.2896	28.789	28.668	28.958	-0.0083504	1152	100	0.92775106	0.06058234	0.9262317	375.9117	0	24.54712						677	13	4	NaN	NaN	NaN	0.030696	1	15476	15476		58.2	7.8845	1	155860			32556	7211	18821	19337	25985	25985					0.04758291402731629
YSRVKRRRK	9	Unmodified	_YSRVKRRRK_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1248.7759821651	1	1248.77598	1247.76871	2.4835	0.0031013	-6.4962	-0.0081123	-4.0127	-0.005011	1249.7692846278576	40.008	0.04805	40.008	40.008	40.056	0	531	31	1.3034686	0.017950177	1.3034686	263.92975	0	3.6345825						26	3	2	NaN	NaN	NaN	0.68801	1	17729	17729		0.23014	0.037651	1	1185.6			32557	2235	18822	19338	25986	25986					0.15473209387869247
YSSAGSDDVYK	11	Unmodified	_YSSAGSDDVYK_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;PCYT1B|p.D247Afs*3|1|0.47|ENSG00000102230|chrX:24575287-24575287|T/-|frameshift_variant;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	596.26185021755	2	596.26185	1190.50915	1.059	0.00063143	-4.2361	-0.0025258	-3.1771	-0.0018944	596.7623245107966	29.256	0.096508	29.256	29.208	29.305	0	1185	79	0.90755045	0.047801137	0.90755045	367.71652	0	19.367828						194	5	2	NaN	NaN	NaN	0.69801	1	16156	16156		7.5876	0	1	20800			32558	4097	18823	19339	25987	25987					-0.07848670595103613
YSSCPLFK	8	Unmodified	_YSSCPLFK_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	944.4546157551	1	944.454616	943.447339	1.6989	0.0016045	1.1724	0.0011073	2.8713	0.0027118	944.4553513811643	22.766	0.12047	22.752	22.704	22.824	-0.01354	351	52	1.4108255	0.030315995	1.409306	286.67563	0	6.160095						114	6	2	NaN	NaN	NaN	0.76633	1	6762	6762		13.737	0	1	8899.6	+		32559	9269	18824	19340	25988	25988					-0.0266464875727479
YSSDDEEQ	8	Unmodified	_YSSDDEEQ_					0	0	0		SAAL1|p.S54Y|1|0.2|ENSG00000166788|chr11:18103321-18103321|G/T|missense_variant	SAAL1|p.S54Y|1|0.2|ENSG00000166788|chr11:18103321-18103321|G/T|missense_variant	SAAL1|p.S54Y|1|0.2|ENSG00000166788|chr11:18103321-18103321|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	972.3428762788	1	972.342876	971.3356	1.4635	0.001423	-1.8667	-0.0018151	-0.40323	-0.00039208	972.3411124309379	24.406	0.14473	24.406	24.357	24.502	0	279	52	1.4535767	0.030241847	1.4535767	295.24054	0	6.142517						149	7	3	NaN	NaN	NaN	0.80071	1	7638	7638		9.1232	0	1	13400			32560	13670	18825	19341	25989	25989					-0.15121456371366548
YSSDKFYKQTV	11	Unmodified	_YSSDKFYKQTV_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	455.89435362259997	3	455.894354	1364.66123	1.7166	0.0007826	-6.8203	-0.0031093	-5.1036	-0.0023267	455.891651133003	18.532	0.071938	18.532	18.508	18.58	0	1530	49	0.6949163	0.029762268	0.6949163	421.72263	0	18.061768						89	4	2	NaN	NaN	NaN	0.76229	1	19738	19738		3.3436	0.039165	1	7837.3			32561	38	18826	19342	25990	25990					-0.006512698475489742
YSSGGGGG	8	Unmodified	_YSSGGGGG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	641.2525451290002	1	641.252545	640.245269	1.2828	0.00082259	4.5221	0.0028998	5.8049	0.0037224	641.2548480030894	31.887	0.14482	31.887	31.863	32.008	0	1224	37	0.883646	0.022081137	0.883646	180.77296	0	4.517273						102	7	2	NaN	NaN	NaN	0.84945	1	1733	1733		0	0	1	10181	+	+	32562	8282	18827	19343	25991	25991					-0.08924416118452427
YSSGGGGG	8	Unmodified	_YSSGGGGG_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	641.2525451290002	1	641.252545	640.245269	1.2375	0.00079356	4.6289	0.0029683	5.8665	0.0037619	641.2550963124869	31.886	0.14477	31.881	31.833	31.978	-0.0044155	1224	40	0.883646	0.023917377	0.88212657	180.77296	0	4.892914						107	7	2	NaN	NaN	NaN	0.84945	1	1638	1638		0	0	1	11482	+	+	32563	8282	18827	19343	25992	25992					-0.08924416118452427
YSSGGGGG	8	Unmodified						0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	641.252545	640.245269	1.2828	0.00082259	4.5221	0.0028998	5.8049	0.0037224	641.2548480030894	31.887	0.14482	31.887	31.863	32.008	0	1224	37	0.883646	0.022081137	0.883646	180.77296		4.517273	0.0027299	-4.1856E-05	0.00075972	NaN	0	102	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10181	+	+	32564	8282	18827	19343							-0.08924416118452427
YSSGGGGG	8	Unmodified						0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	641.252545	640.245269	1.2375	0.00079356	4.6289	0.0029683	5.8665	0.0037619	641.2550963124869	31.886	0.14477	31.881	31.833	31.978	-0.0044155	1224	40	0.883646	0.023917377	0.88212657	180.77296		4.892914	-0.0027299	2.6658E-05	-0.00075972	NaN	0	107	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11482	+	+	32565	8282	18827	19343							-0.08924416118452427
YSSGGKGA	8	Unmodified	_YSSGGKGA_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	726.3416944873001	1	726.341694	725.334418	1.5183	0.0011028	5.51	0.0040021	7.0283	0.0051049	726.3456366598548	23.778	0.19276	23.778	23.754	23.947	0	669	64	1.2206948	0.037883043	1.2206948	249.11212	0	7.730942						303	9	3	NaN	NaN	NaN	0.80071	1	3689	3689		9.1232	0	1	45070			32566	4783	18828	19344	25993	25993					-0.03923581158949219
YSSGGKGA	8	Unmodified	_YSSGGKGA_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	726.3416944873001	1	726.341694	725.334418	1.6094	0.001169	6.0161	0.0043697	7.6255	0.0055387	726.3456576666437	23.802	0.16871	23.789	23.741	23.91	-0.013048	666	76	1.2224985	0.04510367	1.2209791	249.48022	0	9.204483						276	8	3	NaN	NaN	NaN	0.78264	1	3608	3608		11.548	0	1	41640			32567	4783	18828	19344	25994	25994					-0.03923581158949219
YSSKSPNH	8	Unmodified	_YSSKSPNH_					0	0	0			REV__ENST00000481328.7_1_11:76890894-76905079:+|nuORF	REV__ENST00000481328.7_1_11:76890894-76905079:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	460.2170487834	2	460.217049	918.419545	0.98793	0.00045466	-5.8558	-0.0026949	-4.8678	-0.0022403	460.2155437563285	35.529	0.38582	35.529	35.457	35.843	0.00053024	1416	85	0.76547134	0.0518865	0.7639519	311.20004	0	21.094269						1221	17	9	NaN	NaN	NaN	0.75561	1	6248	6248		15.175	4.5704	1	910830	+		32568	9681	18829	19345	25995	25995					-0.04292835693138386
YSSKSPNH	8	Unmodified						0	0	0			REV__ENST00000481328.7_1_11:76890894-76905079:+|nuORF	REV__ENST00000481328.7_1_11:76890894-76905079:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	460.217049	918.419545	0.98793	0.00045466	-5.8558	-0.0026949	-4.8678	-0.0022403	460.2155437563285	35.529	0.38582	35.529	35.457	35.843	0.00053024	1416	85	0.76547134	0.0518865	0.7639519	311.20004		21.094269	-0.00049464	-0.00012254	-0.00075972	NaN	15.175	1221	17	9	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910830	+		32569	9681	18829	19345							-0.04292835693138386
YSSPAILL	8	Unmodified	_YSSPAILL_					0	0	0		ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	863.4872960920001	1	863.487296	862.48002	1.497	0.0012926	-0.76578	-0.00066124	0.73121	0.00063139	863.4864567356061	32.345	0.19308	32.345	32.297	32.49	0	516	52	1.3124412	0.030497313	1.3124412	267.04416	0	6.2053223						219	9	3	NaN	NaN	NaN	0.84207	1	5565	5565		3.5732	0	1	23713			32570	2018	18830	19346	25996	25996					0.04327881637232167
YSSPAILL	8	Unmodified						0	0	0		ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	863.487296	862.48002	0.78649	0.00067912	-0.9905	-0.00085528	-0.20401	-0.00017616	863.4862102255041	32.344	0.16893	32.341	32.292	32.461	-0.0037613	513	55	1.3142352	0.032289624	1.3127158	267.40918		6.5700073	-0.0024397	-7.4703E-05	0.00013726	NaN	3.5732	252	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24160			32571	2018	18830	19346							0.04327881637232167
YSSSVSDPHVT	11	Unmodified	_YSSSVSDPHVT_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.76984242515	2	589.769842	1177.52513	0.71987	0.00042456	-4.1938	-0.0024733	-3.4739	-0.0020488	590.2666586051258	32.586	0.193	32.583	32.534	32.727	-0.0031052	1170	76	0.91673553	0.045935333	0.9152161	371.48502	0	18.614197						192	9	2	NaN	NaN	NaN	0.69801	1	15159	15159		7.5876	0.047225	1	18521	+		32572	9976	18831	19347	25997	25997					-0.05652964358182544
YSSVPEAS	8	Unmodified	_YSSVPEAS_					0	0	0		ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;ACAD10|p.H646Q|1|0.28|ENSG00000111271|chr12:111744866-111744866|T/A|missense_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	839.3781395731	1	839.37814	838.370863	0.94254	0.00079115	-6.6603	-0.0055905	-5.7177	-0.0047993	839.3712521876606	33.504	0.12052	33.504	33.48	33.6	0	471	64	1.3393306	0.037624955	1.3393306	272.63834	0	7.6590576						115	6	2	NaN	NaN	NaN	0.80692	1	5239	5239		8.2903	0.74991	1	7580			32573	2	18832	19348	25998	25998					-0.05478749052895182
YSTFLSIL	8	Unmodified	_YSTFLSIL_					0	0	0		ENST00000274311.2_1_5:52097677-52097773:+|nuORF	ENST00000274311.2_1_5:52097677-52097773:+|nuORF	ENST00000274311.2_1_5:52097677-52097773:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	943.5135108425001	1	943.513511	942.506234	1.2996	0.0012262	-3.3976	-0.0032057	-2.098	-0.0019795	943.5093834831922	24.164	0.12069	24.164	24.14	24.261	0	285	58	1.4500183	0.03381765	1.4500183	294.64374	0	6.871765						121	6	2	NaN	NaN	NaN	0.62311	1	6885	6885		23.85	0	1	10029			32574	6346	18833	19349	25999	25999					0.03268150808708015
YSTGGAGA	8	Unmodified	_YSTGGAGA_					0	0	0		ENST00000265350.8_2_6:41874562-41874799:-|nuORF	ENST00000265350.8_2_6:41874562-41874799:-|nuORF	ENST00000265350.8_2_6:41874562-41874799:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	683.2994953216	1	683.299495	682.292219	1.5087	0.0010309	5.3983	0.0036887	6.907	0.0047195	683.3034991694119	24.526	0.12057	24.526	24.502	24.623	0	723	46	1.1881942	0.02711153	1.1881942	242.76302	0	5.539215						84	6	2	NaN	NaN	NaN	0.84207	1	2882	2882		3.5732	0.41988	1	4908.9			32575	6329	18834	19350	26000	26000					-0.06163556567332762
YSTGVHNI	8	Unmodified	_YSTGVHNI_					0	0	0		nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	nc|ENSG00000048342|Q9P2K1-2|CC2D2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	890.436657505	1	890.436658	889.429381	1.417	0.0012617	-9.7891	-0.0087166	-8.3721	-0.0074548	890.4297092901347	27.422	0.072403	27.411	27.387	27.46	-0.010126	405	52	1.3786905	0.030377269	1.377171	280.39062	0	6.1779785						80	4	2	NaN	NaN	NaN	0.67593	1	5806	5806		20.555	4.1388	1	6842.1			32576	558	18835	19351	26001	26001					-0.01975647687777382
YSTLSPTHI	9	Unmodified	_YSTLSPTHI_					0	0	0			REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1018.5203871344	1	1018.52039	1017.51311	1.6152	0.0016452	-10.042	-0.010228	-8.4263	-0.0085823	1018.5115523736064	29.762	0.07239	29.755	29.731	29.803	-0.0070667	231	61	1.4820169	0.035512567	1.4804975	300.82602	0	7.208496						94	4	2	NaN	NaN	NaN	0.23112	1	9085	9085		23.334	4.2161	1	9626.6	+		32577	9316	18836	19352	26002	26002					0.0050546368928507945
YSTLSPTHI	9	Unmodified						0	0	0			REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1018.52039	1017.51311	2.4225	0.0024674	-12.037	-0.01226	-9.6147	-0.0097928	1018.5069747729206	29.763	0.072392	29.763	29.739	29.811	0	234	46	1.4802408	0.02664435	1.4802408	300.46548		5.408386	0.0039562	-0.00099449	-0.00012833	NaN	23.334	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9246.7	+		32578	9316	18836	19352							0.0050546368928507945
YSTLSPTHI	9	Unmodified						0	0	0			REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	REV__ENST00000396445.5_2_10:24834749-24835250:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1018.52039	1017.51311	1.6152	0.0016452	-10.042	-0.010228	-8.4263	-0.0085823	1018.5115523736064	29.762	0.07239	29.755	29.731	29.803	-0.0070667	231	61	1.4820169	0.035512567	1.4804975	300.82602		7.208496	-0.0039562	0.0010382	0.00012833	NaN	23.334	94	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9626.6	+		32579	9316	18836	19352							0.0050546368928507945
YSTSFNWPN	9	Unmodified	_YSTSFNWPN_					0	0	0			REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.2432635339001	2	558.243264	1114.47197	1.5358	0.00085737	-3.8064	-0.0021249	-2.2706	-0.0012675	558.2408037401019	28.774	0.28957	28.774	28.629	28.918	0	1254	85	0.8652351	0.051600754	0.8652351	350.8453	0	20.923645						550	13	4	NaN	NaN	NaN	0.49672	1	13452	13452		9.746	1.5012	1	72796	+		32580	12590	18837	19353	26003	26003					-0.08068297350178
YSTSFNWPN	9	Unmodified						0	0	0			REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	558.243264	1114.47197	1.5358	0.00085737	-3.8064	-0.0021249	-2.2706	-0.0012675	558.2408037401019	28.774	0.28957	28.774	28.629	28.918	0	1254	85	0.8652351	0.051600754	0.8652351	350.8453		20.923645	0.016608	2.8011E-05	-0.00016127	NaN	9.746	550	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72796	+		32581	12590	18837	19353							-0.08068297350178
YSTSFNWPN	9	Unmodified						0	0	0			REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	REV__ENST00000519722.1_1_8:30107100-30107226:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	558.243264	1114.47197	1.1508	0.00064242	-3.8695	-0.0021601	-2.7187	-0.0015177	558.2410994050215	28.749	0.2654	28.74	28.572	28.837	-0.0083504	1251	79	0.8670771	0.047920167	0.8655577	351.59222		19.431213	-0.016608	-4.2451E-05	0.00016127	NaN	9.746	406	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52765	+		32582	12590	18837	19353							-0.08068297350178
YSTVEECFQ	9	Unmodified	_YSTVEECFQ_					0	0	0		ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2;ENST00000511416.1_2_4:36211020-36212325:-|nuORF;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	553.2289645279	2	553.228965	1104.44338	0.95035	0.00052576	-2.7032	-0.0014955	-1.7528	-0.00096971	553.7283896647464	32.804	0.16892	32.804	32.756	32.925	0	1269	55	0.8560222	0.033179045	0.8560222	347.14804	0	13.455292						327	8	6	NaN	NaN	NaN	0.25448	1	13013	13013		21.835	5.2508	1	46704			32583	41	18838	19354	26004	26004					-0.10466783041647432
YSTVEECFQ	9	Unmodified						0	0	0		ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENSG00000047365|ENST00000303965|ARAP2;ENST00000511416.1_2_4:36211020-36212325:-|nuORF;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	553.228965	1104.44338	0.98247	0.00054353	-2.181	-0.0012066	-1.1986	-0.00066308	553.7289619537394	32.803	0.14476	32.8	32.751	32.896	-0.0031052	1266	52	0.85786515	0.031330705	0.8563457	347.89545		12.7057495	-0.0020814	0.00019616	0.00016177	NaN	21.835	308	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33787			32584	41	18838	19354							-0.10466783041647432
YSVIAVTL	8	Unmodified	_YSVIAVTL_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	865.5029461562002	1	865.502946	864.49567	0.83203	0.00072012	-0.21867	-0.00018926	0.61335	0.00053086	865.5020528809338	35.265	0.096504	35.265	35.265	35.361	0	513	46	1.3142352	0.026909351	1.3142352	267.3994	0	5.4750977						122	5	3	NaN	NaN	NaN	0.84692	1	5598	5598		1.4396	0	1	9143.7	+		32585	8716	18839	19355	26005	26005					0.05800168154291896
YSVIAVTL	8	Unmodified	_YSVIAVTL_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562002	1	865.502946	864.49567	1.268	0.0010974	-0.55683	-0.00048194	0.71115	0.0006155	865.5024400969337	36.107	0.14463	36.108	36.108	36.253	0.0011024	504	49	1.3196158	0.028692722	1.3180964	268.4942	0	5.837921						152	7	2	NaN	NaN	NaN	0.8439	1	5460	5460		3.1533	0	1	17529	+		32586	8716	18839	19355	26006	26006					0.05800168154291896
YSVIAVTL	8	Unmodified	_YSVIAVTL_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562002	1	865.502946	864.49567	1.525	0.0013199	0.2043	0.00017682	1.7293	0.0014967	865.5023755053674	36.565	0.072372	36.567	36.519	36.591	0.0016747	495	49	1.3249949	0.028686523	1.3234755	269.58862	0	5.83667						95	4	2	NaN	NaN	NaN	0.8439	1	5463	5463		3.1533	0	1	7188.4	+		32587	8716	18839	19355	26007	26007					0.05800168154291896
YSVIAVTL	8	Unmodified						0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	865.502946	864.49567	0.83203	0.00072012	-0.21867	-0.00018926	0.61335	0.00053086	865.5020528809338	35.265	0.096504	35.265	35.265	35.361	0	513	46	1.3142352	0.026909351	1.3142352	267.3994		5.4750977	-0.011336	0.00039903	-0.00013716	NaN	1.4396	122	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9143.7	+		32588	8716	18839	19355							0.05800168154291896
YSVQRDLH	8	Unmodified	_YSVQRDLH_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	509.25924794910003	2	509.259248	1016.50394	0.76301	0.00038857	-9.0482	-0.0046079	-8.2852	-0.0042193	509.254891504165	32.586	0.14473	32.583	32.534	32.679	-0.0031052	1296	40	0.8394264	0.02398467	0.83790696	340.78058	0	9.73703						145	7	3	NaN	NaN	NaN	0.72013	1	9053	9053		17.799	2.6236	1	14821	+		32589	9746	18840	19356	26008	26008					-0.0036488487637598155
YSVQRDLH	8	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	509.259248	1016.50394	1.4852	0.00075634	-7.7764	-0.0039602	-6.2912	-0.0032039	509.25580084038415	32.587	0.12067	32.587	32.539	32.659	0	1302	43	0.8357362	0.025831044	0.8357362	339.28247		10.486572	0.0020814	0.00066123	-0.0010854	NaN	17.799	120	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12531	+		32590	9746	18840	19356							-0.0036488487637598155
YSVQRDLH	8	Unmodified						0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	509.259248	1016.50394	0.76301	0.00038857	-9.0482	-0.0046079	-8.2852	-0.0042193	509.254891504165	32.586	0.14473	32.583	32.534	32.679	-0.0031052	1296	40	0.8394264	0.02398467	0.83790696	340.78058		9.73703	-0.0020814	-0.00063411	0.0010854	NaN	17.799	145	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14821	+		32591	9746	18840	19356							-0.0036488487637598155
YSVSLALL	8	Unmodified	_YSVSLALL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	865.5029461562	1	865.502946	864.49567	0.88128	0.00076275	-1.2133	-0.0010501	-0.332	-0.00028734	865.5021252866843	35.288	0.14481	35.287	35.239	35.384	-4.5776E-05	510	43	1.316029	0.025111318	1.3145095	267.76437	0	5.109253						123	7	3	NaN	NaN	NaN	0.84692	1	5457	5457		1.4396	0	1	9364.1			32592	817	18841	19357	26009	26009					0.058001681542691585
YSYGAGSK	8	Unmodified	_YSYGAGSK_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	832.3835593020001	1	832.383559	831.376283	1.8288	0.0015223	4.1493	0.0034538	5.9781	0.0049761	832.386435860615	28.532	0.21719	28.532	28.508	28.725	0	486	85	1.3303722	0.050174594	1.3303722	270.85147	0	10.215088						297	10	3	NaN	NaN	NaN	0.62311	1	5148	5148		23.85	10.113	1	30843	+		32593	10279	18842	19358	26010	26010					-0.046150254704230065
YSYGSYQSETD	11	Unmodified	_YSYGSYQSETD_					0	0	0			REV__VANGL2|p.G38Afs*7|1|0.3|ENSG00000162738|chr1:160416099-160416099|G/-|frameshift_variant	REV__VANGL2|p.G38Afs*7|1|0.3|ENSG00000162738|chr1:160416099-160416099|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.2542221507	2	650.254222	1298.49389	1.3776	0.0008958	7.2408	0.0047084	8.6184	0.0056042	650.2592935229188	21.224	0.12041	21.224	21.2	21.32	0	1158	43	0.92408	0.025700212	0.92408	374.05692	0	10.403168						143	6	3	NaN	NaN	NaN	0.72342	1	18748	18748		5.9198	0.7309	1	23930	+		32594	10252	18843	19359	26011	26011					-0.14341582182942147
YSYLERATIGR	11	Unmodified	_YSYLERATIGR_					0	0	0			REV__ENSG00000143536|ENST00000271835|CRNN	REV__ENSG00000143536|ENST00000271835|CRNN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.85150110235	2	664.851501	1327.68845	1.5006	0.00099767	-8.7356	-0.0058079	-7.235	-0.0048102	664.8445333074013	26.746	0.14478	26.735	26.639	26.783	-0.010645	1080	70	0.9717421	0.042114913	0.97022265	393.25897	0	17.043701						255	7	3	NaN	NaN	NaN	0.50669	1	18364	18364		18.233	1.0351	1	30038	+		32595	9869	18844	19360	26012	26012					0.037712584834935114
YSYLETLFC	9	Unmodified	_YSYLETLFC_					0	0	0		ENSG00000135249|ENST00000257700|RINT1;RINT1|p.E409Tfs*12|1|0.04|ENSG00000135249|chr7:105550377-105550387|TGAAAGGGAGC/-|frameshift_variant	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.5125245645	1	1138.51252	1137.50525	2.5418	0.0028939	-1.7709	-0.0020162	0.77092	0.00087771	1138.5106301008202	28.291	0.096529	28.291	28.194	28.291	0	60	52	1.582944	0.030011892	1.582944	320.859	0	6.0833435						123	5	2	NaN	NaN	NaN	0.66529	1	14361	14361		2.1763	0	1	11735			32596	2924	18845	19361	26013	26013					-0.05800431622492397
YSYVIRID	8	Unmodified	_YSYVIRID_					0	0	0		ENST00000475809.1_1_13:111552980-111553058:-|nuORF	ENST00000475809.1_1_13:111552980-111553058:-|nuORF	ENST00000475809.1_1_13:111552980-111553058:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.77419952155	2	514.7742	1027.53385	1.8185	0.0009361	-8.5174	-0.0043845	-6.6989	-0.0034484	514.7696709385112	34.421	0.096432	34.421	34.372	34.469	0	1275	49	0.85233563	0.029492497	0.85233563	345.97168	0	11.971313						112	5	3	NaN	NaN	NaN	0.81251	1	9671	9671		7.5404	0.67717	1	15806			32597	7177	18846	19362	26014	26014					0.021180540689329064
YTAAIYIFNEY	11	Unmodified	_YTAAIYIFNEY_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3295358522499	2	684.329536	1366.64452	1.2753	0.00087273	3.5482	0.0024281	4.8235	0.0033009	684.8347902938413	33.913	0.072392	33.911	33.887	33.96	-0.0012474	1077	46	0.9735726	0.027460277	0.9720532	393.884	0	11.109802						105	4	3	NaN	NaN	NaN	0.76488	1	18837	18837		2.8895	0.96483	1	6794.5	+		32598	8482	18847	19363	26015	26015					-0.024137707335057712
YTAAIYIFNEY	11	Unmodified						0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	684.329536	1366.64452	1.0123	0.00069276	6.6137	0.004526	7.6261	0.0052187	684.3326621252234	33.89	0.096535	33.89	33.842	33.938	0	1080	55	0.9717421	0.03295064	0.9717421	393.14343		13.331024	-0.010822	0.0019768	-0.00015553	NaN	2.8895	116	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7874.2	+		32599	8482	18847	19363							-0.024137707335057712
YTAAIYIFNEY	11	Unmodified						0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	684.329536	1366.64452	1.2753	0.00087273	3.5482	0.0024281	4.8235	0.0033009	684.8347902938413	33.913	0.072392	33.911	33.887	33.96	-0.0012474	1077	46	0.9735726	0.027460277	0.9720532	393.884		11.109802	0.010822	-0.0022189	0.00015553	NaN	2.8895	105	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6794.5	+		32600	8482	18847	19363							-0.024137707335057712
YTAGAGTG	8	Unmodified	_YTAGAGTG_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	697.3151453858002	1	697.315145	696.307869	0.91905	0.00064087	6.4422	0.0044923	7.3613	0.0051331	697.3195363912296	39.066	0.24126	39.071	39.023	39.264	0.0046806	696	79	1.2044523	0.04695058	1.2029328	245.98735	0	9.588791						181	11	2	NaN	NaN	NaN	0.84945	1	3097	3097		0	0	1	15259			32601	2575	18848	19364	26016	26016					-0.052432700502663465
YTARDYYHD	9	Unmodified	_YTARDYYHD_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.2569022254	2	602.256902	1202.49925	1.1685	0.00070375	-5.5485	-0.0033416	-4.38	-0.0026379	602.7545291679368	36.036	0.21701	36.036	35.94	36.157	0	1188	70	0.90571284	0.042269647	0.90571284	366.93005	0	17.124664						406	10	5	NaN	NaN	NaN	0.5168	1	16534	16534		6.2502	0	1	55635			32602	2780	18849	19365	26017	26017					-0.09389813809798397
YTAYGTAC	8	Unmodified	_YTAYGTAC_					0	0	0		nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.3447309546999	1	849.344731	848.337454	2.9261	0.0024853	-2.884	-0.0024495	0.042106	3.5763E-05	849.3414353452234	28.869	0.024132	28.861	28.861	28.885	-0.0083504	936	25	1.0593836	0.014567614	1.0578642	215.61061	0	2.9648895						22	2	2	NaN	NaN	NaN	0.82797	1	5229	5229		5.4659	1.0528	1	1137.4			32603	6085	18850	19366	26018	26018					-0.09278074096459932
YTCFLVFNGE	10	Unmodified	_YTCFLVFNGE_					0	0	0			REV__ENST00000491515.5_1_1:40432335-40433413:+|nuORF	REV__ENST00000491515.5_1_1:40432335-40433413:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	596.77079955285	2	596.7708	1191.52705	0.80932	0.00048298	-1.9302	-0.0011519	-1.1209	-0.00066889	596.7694388233946	27.977	0.16892	27.968	27.919	28.088	-0.0089798	1044	148	0.99369496	0.08951074	0.9921755	402.61615	0	36.26715						670	8	4	NaN	NaN	NaN	0.77928	1	15569	15569		0.69115	0.36126	1	77567	+		32604	10509	18851	19367	26019	26019					-0.06105626873932124
YTCIVRRYY	9	Unmodified	_YTCIVRRYY_					0	0	0		ENST00000463990.1_1_2:102953760-102955562:+|nuORF	ENST00000463990.1_1_2:102953760-102955562:+|nuORF	ENST00000463990.1_1_2:102953760-102955562:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.87798086856674	3	412.877981	1235.61211	2.3974	0.00098982	7.0413	0.0029072	9.4386	0.003897	412.88163590504365	18.7	0.023983	18.7	18.7	18.724	0	1482	25	0.72465914	0.014858484	0.72465914	440.23215	0	9.026581						25	2	2	NaN	NaN	NaN	0.66196	1	17421	17421		1.1768	0.36547	1	1906.4			32605	7095	18852	19368	26020	26020					0.0037316338255095616
YTCMCAGRLSE	11	Unmodified	_YTCMCAGRLSE_					0	0	0		ENST00000509996.1_1_4:110902073-110932465:+|nuORF;nc|ENSG00000138798|P01133-2|EGF;ENSG00000138798|ENST00000265171|EGF	ENST00000509996.1_1_4:110902073-110932465:+|nuORF	ENST00000509996.1_1_4:110902073-110932465:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	411.8402095621	3	411.84021	1232.4988	1.8879	0.00077753	1.6501	0.00067958	3.5381	0.0014571	411.84105657873	26.167	0.072392	26.167	26.119	26.191	0	1449	31	0.74507743	0.018550932	0.74507743	452.64893	0	11.270081						81	4	3	NaN	NaN	NaN	0.76488	1	17329	17329		0.9877	0.10307	1	6603.4			32606	3192	18853	19369	26021	26021					-0.10815016117180676
YTDIILYAS	9	Unmodified	_YTDIILYAS_					0	0	0		ENST00000508139.1_1_5:176518793-176520368:+|nuORF;ENSG00000160867|ENST00000292408|FGFR4	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	529.77386517055	2	529.773865	1057.53318	1.973	0.0010452	-6.8172	-0.0036116	-4.8442	-0.0025663	529.7705321975368	28.098	0.24132	28.098	28.026	28.267	0	1257	82	0.86339295	0.049739003	0.86339295	350.3285	0	20.182007						332	11	3	NaN	NaN	NaN	0.58159	1	10985	10985		6.2502	0	1	65948			32607	4081	18854	19370	26022	26022					0.006712146292329635
YTDIILYAS	9	Unmodified	_YTDIILYAS_					0	0	0		ENST00000508139.1_1_5:176518793-176520368:+|nuORF;ENSG00000160867|ENST00000292408|FGFR4	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	529.77386517055	2	529.773865	1057.53318	0.79929	0.00042344	-5.9307	-0.0031419	-5.1314	-0.0027185	529.7705372658655	28.121	0.24133	28.112	28.064	28.305	-0.0089779	1257	79	0.86339295	0.047889054	0.8618735	350.3285	0	19.431366						393	11	4	NaN	NaN	NaN	0.36492	1	10760	10760		15.175	3.6269	1	67877			32608	4081	18854	19370	26023	26023					0.006712146292329635
YTEEHHLRDYF	11	Unmodified	_YTEEHHLRDYF_					0	0	0		ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.34149752205	2	755.341498	1508.66844	1.7718	0.0013383	-8.955	-0.0067641	-7.1832	-0.0054258	755.3356213073791	28.17	0.048262	28.17	28.122	28.17	0	1002	64	1.0192708	0.038336873	1.0192708	411.98346	0	15.495575						115	3	3	NaN	NaN	NaN	0.7072	1	20611	20611		6.9844	2.6742	1	11012			32609	6942	18855	19371	26024	26024					-0.06554537247120606
YTEMAIQQF	9	Unmodified	_YTEMAIQQF_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.76297452075	2	565.762975	1129.5114	1.0117	0.00057238	-2.1631	-0.0012238	-1.1514	-0.00065144	565.7611895565897	27.108	0.19308	27.098	27.049	27.242	-0.010126	1251	49	0.8670771	0.029470205	0.8655577	351.535	0	11.947968						143	9	2	NaN	NaN	NaN	0.39244	1	13612	13612		14.042	0	1	19554	+		32610	9964	18856	19372	26025	26025					-0.04817913390979811
YTEMAIQQF	9	Unmodified						0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	565.762975	1129.5114	1.0117	0.00057238	-2.1631	-0.0012238	-1.1514	-0.00065144	565.7611895565897	27.108	0.19308	27.098	27.049	27.242	-0.010126	1251	49	0.8670771	0.029470205	0.8655577	351.535		11.947968	0.0066244	0.0012111	-0.00075972	NaN	14.042	143	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19554	+		32611	9964	18856	19372							-0.04817913390979811
YTEQLCFPSF	10	Unmodified	_YTEQLCFPSF_					0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	617.776081896	2	617.776082	1233.53761	1.3089	0.00080858	-6.7427	-0.0041655	-5.4338	-0.0033569	617.7723579093819	21.874	0.19273	21.874	21.802	21.994	0	1173	70	0.91489893	0.04223311	0.91489893	370.54578	0	17.10498						191	9	2	NaN	NaN	NaN	0.76025	1	17359	17359		3.9281	0.7165	1	17517	+		32612	11789	18857	19373	26026	26026					-0.06981644219513328
YTEQLCFPSF	10	Unmodified						0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	617.776082	1233.53761	1.3089	0.00080858	-6.7427	-0.0041655	-5.4338	-0.0033569	617.7723579093819	21.874	0.19273	21.874	21.802	21.994	0	1173	70	0.91489893	0.04223311	0.91489893	370.54578		17.10498	0.0070169	0.00086692	0.00075972	NaN	3.9281	191	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17517	+		32613	11789	18857	19373							-0.06981644219513328
YTEQLCFPSF	10	Unmodified						0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	617.776082	1233.53761	1.0886	0.0006725	-8.4519	-0.0052214	-7.3633	-0.0045489	618.2725964179302	21.874	0.048141	21.86	21.836	21.884	-0.013895	1173	61	0.91489893	0.03672248	0.9133795	370.54578		14.873077	-0.0070169	-0.0012449	-0.00075972	NaN	3.9281	68	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6743.1	+		32614	11789	18857	19373							-0.06981644219513328
YTFVVVQK	8	Unmodified	_YTFVVVQK_					0	0	0		ENST00000395246.5_1_5:130694918-130695191:+|nuORF	ENST00000395246.5_1_5:130694918-130695191:+|nuORF	ENST00000395246.5_1_5:130694918-130695191:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	492.28166041290007	2	492.28166	982.548768	1.7538	0.00086335	0.37988	0.00018701	2.1336	0.0010504	492.2814301106454	35.119	0.024117	35.119	35.119	35.143	-4.5776E-05	1326	28	0.8209676	0.016622722	0.81944823	333.44067	0	6.7514343						27	2	2	NaN	NaN	NaN	0.82332	1	7806	7806		6.0903	0	1	2055.3			32615	6783	18858	19374	26027	26027					0.056795459369595847
YTFVWKCFAKF	11	Unmodified	_YTFVWKCFAKF_					0	0	0			REV__sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	REV__sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	720.3626587756	2	720.362659	1438.71076	1.3931	0.0010035	1.9644	0.0014151	3.3575	0.0024186	720.3644605237282	25.033	0.072392	25.033	25.009	25.081	0	1020	52	1.0083145	0.031058133	1.0083145	407.73505	0	12.5590515						79	4	3	NaN	NaN	NaN	0.71564	1	20320	20320		6.4299	1.5202	1	5321.9	+		32616	13328	18859	19375	26028	26028					0.008957666275819065
YTFYSISQER	10	Unmodified	_YTFYSISQER_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.3091347611501	2	647.309135	1292.60372	1.5379	0.00099551	-1.6307	-0.0010556	-0.092767	-6.0049E-05	647.3090048347199	20.79	0.048182	20.79	20.766	20.814	0	1095	40	0.9625867	0.023811758	0.9625867	389.6627	0	9.639191						53	3	2	NaN	NaN	NaN	0.5544	1	18626	18626		17.198	8.2364	1	5552.5			32617	5337	18860	19376	26029	26029					-0.03088112053092118
YTFYSISQER	10	Unmodified						0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	647.309135	1292.60372	1.4746	0.00095454	-2.1486	-0.0013908	-0.67398	-0.00043627	647.3072515929038	20.791	0.072184	20.776	20.752	20.825	-0.014086	1095	58	0.9625867	0.034813106	0.96106726	389.6627		14.09259	-0.0068836	-0.00041151	-0.00075972	NaN	17.198	78	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6178			32618	5337	18860	19376							-0.03088112053092118
YTGAGGGG	8	Unmodified	_YTGAGGGG_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	639.2732805711001	1	639.273281	638.266004	1.231	0.00078693	3.8748	0.0024771	5.1058	0.003264	639.275817807332	34.903	0.16871	34.903	34.855	35.023	0	1272	40	0.854179	0.023961365	0.854179	174.75604	0	4.902237						133	8	2	NaN	NaN	NaN	0.84945	1	1694	1694		0	0	1	18533	+		32619	10676	18861	19377	26030	26030					-0.06759825738799918
YTGAPPVT	8	Unmodified	_YTGAPPVT_					0	0	0		ENST00000585615.5_1_19:45571485-45574100:+|nuORF	ENST00000585615.5_1_19:45571485-45574100:+|nuORF	ENST00000585615.5_1_19:45571485-45574100:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	403.2081611188	2	403.208161	804.401769	1.3048	0.00052611	-1.6115	-0.00064975	-0.30666	-0.00012365	403.20720120006405	29.979	0.072378	29.973	29.949	30.021	-0.0064087	1521	31	0.70049703	0.018599331	0.6989776	285.37894	0	7.5772705						50	4	2	NaN	NaN	NaN	0.84727	1	4702	4702		1.2418	0	1	5083.4			32620	7695	18862	19378	26031	26031					-0.008255509480022738
YTGLYAVIK	9	Unmodified	_YTGLYAVIK_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.29476778815	2	514.294768	1026.57498	2.0488	0.0010537	-2.2491	-0.0011567	-0.20028	-0.000103	514.2940750824964	23.73	0.096397	23.73	23.706	23.803	0	1284	64	0.8468043	0.038715184	0.8468043	343.73068	0	15.715088						198	5	4	NaN	NaN	NaN	0.47587	1	9637	9637		10.605	0.85897	1	24545	+		32621	9137	18863	19379	26032	26032					0.06275815108415372
YTGLYAVIK	9	Unmodified						0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.294768	1026.57498	2.0488	0.0010537	-2.2491	-0.0011567	-0.20028	-0.000103	514.2940750824964	23.73	0.096397	23.73	23.706	23.803	0	1284	64	0.8468043	0.038715184	0.8468043	343.73068		15.715088	-0.017398	-0.00017128	0.00075972	NaN	10.605	198	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24545	+		32622	9137	18863	19379							0.06275815108415372
YTHEEYISL	9	Unmodified	_YTHEEYISL_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.7718537978501	2	577.771854	1153.52915	1.6955	0.00097959	0.90571	0.00052329	2.6012	0.0015029	577.7720441151174	21.2	0.28895	21.2	21.103	21.392	0	1194	103	0.902037	0.062556505	0.902037	365.6168	0	25.355621						627	13	4	NaN	NaN	NaN	0.16171	1	14912	14912		27.789	7.2334	1	92274			32623	3244	18864	19380	26033	26033					-0.041468748644547304
YTHEEYISL	9	Unmodified	_YTHEEYISL_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.7718537978501	2	577.771854	1153.52915	1.3415	0.00077506	0.70045	0.0004047	2.0419	0.0011798	577.7718310840943	21.224	0.24068	21.21	21.089	21.33	-0.014004	1191	109	0.90387505	0.066229165	0.9023556	366.3618	0	26.844238						648	11	4	NaN	NaN	NaN	0.043119	1	14417	14417		49.833	23.718	1	96463			32624	3244	18864	19380	26034	26034					-0.041468748644547304
YTIPIDHIGFE	11	Unmodified	_YTIPIDHIGFE_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.82970302775	2	652.829703	1303.64485	0.62448	0.00040768	7.845	0.0051215	8.4695	0.0055291	652.8351433123788	20.959	0.072121	20.945	20.921	20.993	-0.014088	1164	43	0.9204082	0.025702953	0.91888875	372.55508	0	10.403839						75	4	2	NaN	NaN	NaN	0.74155	1	18003	18003		4.7291	0.11162	1	8686			32625	3991	18865	19381	26035	26035					0.005176489863742972
YTKGAGSG	8	Unmodified	_YTKGAGSG_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	740.3573445515002	1	740.357345	739.350068	1.2457	0.00092225	5.6738	0.0042007	6.9195	0.0051229	740.3621904479172	24.237	0.19308	24.237	24.188	24.381	0	603	100	1.2603331	0.059422374	1.2603331	257.1108	0	12.122314						298	9	3	NaN	NaN	NaN	0.82797	1	3897	3897		5.4659	0	1	32097			32626	5664	18866	19382	26036	26036					-0.030032946418828033
YTKGAGSG	8	Unmodified	_YTKGAGSG_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	740.3573445515002	1	740.357345	739.350068	1.5437	0.0011429	3.9968	0.0029591	5.5405	0.004102	740.3607915977552	24.236	0.21721	24.224	24.175	24.393	-0.012747	600	88	1.2621325	0.052214026	1.2606131	257.47794	0	10.651779						288	10	3	NaN	NaN	NaN	0.81251	1	3823	3823		7.5404	0	1	29599			32627	5664	18866	19382	26037	26037					-0.030032946418828033
YTKYNNFF	8	Unmodified	_YTKYNNFF_					0	0	0			REV__nc|ENSG00000073849|P15907-2|ST6GAL1	REV__nc|ENSG00000073849|P15907-2|ST6GAL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.75854945735	2	548.758549	1095.50255	1.1957	0.00065617	-9.0129	-0.0049459	-7.8172	-0.0042898	548.7546259835466	29.474	0.096596	29.474	29.425	29.522	0	1209	34	0.892844	0.020231187	0.892844	362.11707	0	8.205322						68	5	2	NaN	NaN	NaN	0.80692	1	12634	12634		8.2903	0.045466	1	5123	+		32628	8599	18867	19383	26038	26038					-0.041385189651464316
YTKYNNFF	8	Unmodified						0	0	0			REV__nc|ENSG00000073849|P15907-2|ST6GAL1	REV__nc|ENSG00000073849|P15907-2|ST6GAL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	548.758549	1095.50255	1.1957	0.00065617	-9.0129	-0.0049459	-7.8172	-0.0042898	548.7546259835466	29.474	0.096596	29.474	29.425	29.522	0	1209	34	0.892844	0.020231187	0.892844	362.11707		8.205322	0.015986	-0.00062603	-0.00015978	NaN	8.2903	68	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5123	+		32629	8599	18867	19383							-0.041385189651464316
YTKYNNFF	8	Unmodified						0	0	0			REV__nc|ENSG00000073849|P15907-2|ST6GAL1	REV__nc|ENSG00000073849|P15907-2|ST6GAL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	548.758549	1095.50255	1.2195	0.0006692	-7.9346	-0.0043542	-6.7151	-0.003685	548.7542988099096	29.449	0.14475	29.442	29.393	29.538	-0.0070667	1206	40	0.894683	0.023907006	0.89316356	362.8629		9.696136	-0.015986	0.00055751	0.00015978	NaN	8.2903	103	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8850.5	+		32630	8599	18867	19383							-0.041385189651464316
YTLASTVTL	9	Unmodified	_YTLASTVTL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	968.5298891882002	1	968.529889	967.522613	0.5262	0.00050964	-0.068201	-6.6055E-05	0.458	0.00044359	968.5302381214591	35.529	0.14479	35.529	35.505	35.65	0.00053024	261	145	1.4642475	0.08542073	1.462728	297.4243	0	17.351013						301	7	2	NaN	NaN	NaN	0.27442	1	7398	7398		20.555	0	1	38982	+		32631	9116	18868	19384	26039	26039					0.03755231974821527
YTLASTVTL	9	Unmodified						0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	968.529889	967.522613	0.5262	0.00050964	-0.068201	-6.6055E-05	0.458	0.00044359	968.5302381214591	35.529	0.14479	35.529	35.505	35.65	0.00053024	261	145	1.4642475	0.08542073	1.462728	297.4243		17.351013	-0.012545	0.00055429	-0.0016486	NaN	20.555	301	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38982	+		32632	9116	18868	19384							0.03755231974821527
YTLDLGPQPG	10	Unmodified	_YTLDLGPQPG_					0	0	0		ENSG00000165188|ENST00000489339|RNF183	ENSG00000165188|ENST00000489339|RNF183	ENSG00000165188|ENST00000489339|RNF183	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7691141436501	2	530.769114	1059.52368	0.94252	0.00050026	-9.5503	-0.005069	-8.6078	-0.0045688	530.764092717627	26.625	0.21719	26.614	26.542	26.759	-0.010643	1320	91	0.824661	0.05534631	0.8231416	334.60464	0	22.456665						427	10	3	NaN	NaN	NaN	0.47445	1	10823	10823		20.513	0.064659	1	122710			32633	4383	18869	19385	26040	26040					-0.0037055365628475556
YTLLKRRCR	9	Unmodified	_YTLLKRRCR_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.85586658625	2	604.855867	1207.69718	0.79093	0.0004784	-2.9318	-0.0017733	-2.1409	-0.0012949	604.8539854063314	28.387	0.096548	28.378	28.33	28.426	-0.0089779	1140	40	0.93509084	0.023847759	0.9335714	378.81342	0	9.660919						105	5	3	NaN	NaN	NaN	0.56671	1	16008	16008		6.8632	1.1691	1	10685	+		32634	10035	18870	19386	26041	26041					0.10163953638993917
YTLLKRRCR	9	Unmodified						0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	604.855867	1207.69718	0.79093	0.0004784	-2.9318	-0.0017733	-2.1409	-0.0012949	604.8539854063314	28.387	0.096548	28.378	28.33	28.426	-0.0089779	1140	40	0.93509084	0.023847759	0.9335714	378.81342		9.660919	0.01929	0.00089472	0.0001576	NaN	6.8632	105	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10685	+		32635	10035	18870	19386							0.10163953638993917
YTLRFLALF	9	Unmodified	_YTLRFLALF_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.3316846107	2	572.331685	1142.64882	1.7416	0.0009968	-1.1702	-0.00066976	0.57142	0.00032704	572.3311026593235	29.836	0.072418	29.836	29.811	29.884	0	1224	49	0.883646	0.029431999	0.883646	358.2028	0	11.930817						103	4	3	NaN	NaN	NaN	0.38313	1	14563	14563		14.425	2.3763	1	8677.1			32636	5610	18871	19387	26042	26042					0.0831978327073557
YTLRNSDLQ	9	Unmodified	_YTLRNSDLQ_					0	0	0			REV__ENSG00000162951|ENST00000295057|LRRTM1	REV__ENSG00000162951|ENST00000295057|LRRTM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	555.2829200106501	2	555.28292	1108.55129	1.6012	0.00088914	1.4959	0.00083066	3.0971	0.0017198	555.2837320929634	23.103	0.19285	23.09	23.041	23.234	-0.013294	1242	94	0.87260187	0.057101607	0.8710824	353.85553	0	23.1557						308	9	2	NaN	NaN	NaN	0.37272	1	12851	12851		8.2448	0	1	40845	+		32637	10262	18872	19388	26043	26043					0.001353496039428137
YTLSETSLKM	10	Unmodified	_YTLSETSLKM_					0	0	0		tr|U7T624|U7T624_FUSNUPeptidaseM15Cdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00073PE=4SV=1	tr|U7T624|U7T624_FUSNUPeptidaseM15Cdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00073PE=4SV=1	tr|U7T624|U7T624_FUSNUPeptidaseM15Cdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00073PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.79701430335	2	586.797014	1171.57948	1.1337	0.00066524	-4.3339	-0.0025431	-3.2002	-0.0018779	586.7944431523379	22.38	0.12037	22.366	22.27	22.39	-0.013733	1200	55	0.89836043	0.033085942	0.896841	364.06033	0	13.408051						146	6	2	NaN	NaN	NaN	0.41164	1	14997	14997		23.118	1.3465	1	27259			32638	13995	18873	19389	26044	26044					0.0005491146901022148
YTLSISSATQ	10	Unmodified	_YTLSISSATQ_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5364311291	1	1070.53643	1069.52915	1.5791	0.0016905	6.5615	0.0070243	8.1406	0.0087148	1070.5429541757676	30.535	0.14483	30.535	30.487	30.632	0	132	115	1.5405227	0.0671885	1.5405227	312.49826	0	13.6293335						276	7	2	NaN	NaN	NaN	0.4422	1	11542	11542		21.85	2.7321	1	28845			32639	3278	18874	19390	26045	26045					-0.002828748644560619
YTLSQEGGPA	10	Unmodified	_YTLSQEGGPA_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.7430963584	2	511.743096	1021.47164	0.96839	0.00049557	-0.90789	-0.00046461	0.060504	3.0963E-05	511.7425674866145	20.598	0.24098	20.584	20.511	20.752	-0.014088	1311	88	0.83019954	0.05350429	0.8286801	337.01282	0	21.719666						335	11	4	NaN	NaN	NaN	0.20271	1	9231	9231		35.296	5.6982	1	47045			32640	5186	18875	19391	26046	26046					-0.03823717070042676
YTLSYTAGPQ	10	Unmodified	_YTLSYTAGPQ_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	550.7665714547	2	550.766571	1099.51859	0.80098	0.00044115	-4.8665	-0.0026803	-4.0655	-0.0022391	550.76445185085	34.107	0.12067	34.107	34.059	34.179	0	1218	82	0.8873258	0.049701393	0.8873258	359.86267	0	20.15683						138	6	2	NaN	NaN	NaN	0.62764	1	12822	12822		13.003	0	1	15605			32641	3389	18876	19392	26047	26047					-0.027188575189029507
YTLVFPIVG	9	Unmodified	_YTLVFPIVG_					0	0	0		tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1008.5764454503002	1	1008.57645	1007.56917	2.0616	0.0020793	-1.622	-0.0016359	0.43968	0.00044346	1008.5745595146612	38.033	0.09613	38.036	37.988	38.084	0.0034256	105	37	1.5564433	0.021217346	1.5549239	315.97504	0	4.307373						74	5	2	NaN	NaN	NaN	0.42773	1	8731	8731		12.588	1.0394	1	4947.3			32642	13744	18877	19393	26048	26048					0.06568716596768809
YTMDTSSSC	9	Unmodified	_YTMDTSSSC_					0	0	0		ENST00000561536.5_1_16:89789452-89804651:+|nuORF;nc|ENSG00000158805|Q8N554-2|ZNF276;ENSG00000158805|ENST00000443381|ZNF276	ENST00000561536.5_1_16:89789452-89804651:+|nuORF	ENST00000561536.5_1_16:89789452-89804651:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	994.3492239851	1	994.349224	993.341948	2.114	0.0021021	-3.0684	-0.0030511	-0.95441	-0.00094902	994.3462123451327	38.297	0.14425	38.301	38.252	38.397	0.0034256	309	40	1.435777	0.023150682	1.4342575	291.5348	0	4.7007446						83	7	2	NaN	NaN	NaN	0.55027	1	8161	8161		7.5404	2.6306	1	4843.3			32643	4002	18878	19394	26049	26049					-0.15498977735853714
YTMDTSSSC	9	Unmodified						0	0	0		ENST00000561536.5_1_16:89789452-89804651:+|nuORF;nc|ENSG00000158805|Q8N554-2|ZNF276;ENSG00000158805|ENST00000443381|ZNF276	ENST00000561536.5_1_16:89789452-89804651:+|nuORF	ENST00000561536.5_1_16:89789452-89804651:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	994.349224	993.341948	1.1108	0.0011045	-1.7988	-0.0017886	-0.68797	-0.00068409	994.3487244596577	38.299	0.096127	38.299	38.275	38.372	0	315	43	1.4322147	0.024935484	1.4322147	290.81146		5.0631714	-0.00055038	0.000781	-0.0010214	NaN	7.5404	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5418.5			32644	4002	18878	19394							-0.15498977735853714
YTMLTGYTPF	10	Unmodified	_YTMLTGYTPF_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.2810000984	2	597.281	1192.54745	1.3358	0.00079785	6.5034	0.0038844	7.8392	0.0046822	597.2863488246804	34.493	0.19304	34.493	34.421	34.614	0	1155	82	0.92591566	0.04956734	0.92591566	375.15027	0	20.083069						224	9	2	NaN	NaN	NaN	0.56921	1	16216	16216		16.584	1.4088	1	28048			32645	5066	18879	19395	26050	26050					-0.041124562141249044
YTMLTGYTPF	10	Unmodified						0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	597.281	1192.54745	1.0074	0.00060171	6.5666	0.0039221	7.574	0.0045238	597.2834849488689	34.468	0.024113	34.467	34.443	34.467	-0.0006485	1149	49	0.92958635	0.02936846	0.9280669	376.63748		11.899139	-0.013014	3.9981E-05	0.0010756	NaN	16.584	74	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7134.3			32646	5066	18879	19395							-0.041124562141249044
YTPTISRER	9	Unmodified	_YTPTISRER_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	561.7987372503501	2	561.798737	1121.58292	1.1257	0.0006324	0.86029	0.00048331	1.986	0.0011157	561.799546211376	12.82	0.024014	12.82	12.796	12.82	0	1197	34	0.9001988	0.02022028	0.9001988	364.99448	0	8.198517						38	2	2	NaN	NaN	NaN	0.21451	1	13753	13753		24.4	5.2367	1	3705.6			32647	2492	18880	19396	26051	26051					0.026993423579142473
YTQGVYGSCK	10	Unmodified	_YTQGVYGSCK_					0	0	0		ENST00000231061.8_1_5:151041803-151041914:-|nuORF	ENST00000231061.8_1_5:151041803-151041914:-|nuORF	ENST00000231061.8_1_5:151041803-151041914:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1105.4982714838	1	1105.49827	1104.491	1.4255	0.0015759	-10.587	-0.011704	-9.1615	-0.010128	1105.4879237480877	28.145	0.048269	28.137	28.112	28.161	-0.0089798	72	55	1.5758814	0.03179586	1.5743619	319.54196	0	6.447235						74	3	2	NaN	NaN	NaN	0.6772	1	12669	12669		9.6116	0.64966	1	6685.7			32648	6250	18881	19397	26052	26052					-0.057070840507776666
YTQLKSGLEV	10	Unmodified	_YTQLKSGLEV_					0	0	0		ENST00000259339.6_1_9:132572399-132572609:+|nuORF	ENST00000259339.6_1_9:132572399-132572609:+|nuORF	ENST00000259339.6_1_9:132572399-132572609:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.31114613385	2	569.311146	1136.60774	1.8074	0.001029	-6.1519	-0.0035024	-4.3446	-0.0024734	569.8089358303051	14.909	0.09609	14.909	14.885	14.981	0	1197	25	0.9001988	0.014706433	0.9001988	364.93594	0	5.9619446						43	5	2	NaN	NaN	NaN	0.66626	1	14347	14347		10.36	0	1	2569.2			32649	6294	18882	19398	26053	26053					0.044899774406076176
YTSGPNPSMH	10	Unmodified	_YTSGPNPSMH_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	364.1589244205667	3	364.158924	1089.45494	2.4376	0.00088769	3.5719	0.0013007	6.0095	0.0021884	364.1602146151011	18.074	0.144	18.06	18.012	18.156	-0.013786	1512	31	0.7060759	0.018593311	0.70455647	429.5769	0	11.312195						95	7	2	NaN	NaN	NaN	0.5626	1	12043	12043		10.204	6.2951	1	7372.4	+		32650	9679	18883	19399	26054	26054					-0.08620541227628564
YTSIIWELK	9	Unmodified	_YTSIIWELK_					0	0	0		ENST00000230538.11_1_6:112462098-112462671:-|nuORF	ENST00000230538.11_1_6:112462098-112462671:-|nuORF	ENST00000230538.11_1_6:112462098-112462671:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8186070252	2	576.818607	1151.62266	2.0577	0.0011869	-1.7008	-0.00098103	0.35696	0.0002059	576.8177426701698	25.756	0.21722	25.745	25.696	25.914	-0.0116	1182	43	0.9093879	0.025719583	0.90786844	368.6035	0	10.424957						263	10	4	NaN	NaN	NaN	0.060816	1	14365	14365		42.318	0.53309	1	81925			32651	6249	18884	19400	26055	26055					0.05291469308599517
YTSIIWELK	9	Unmodified						0	0	0		ENST00000230538.11_1_6:112462098-112462671:-|nuORF	ENST00000230538.11_1_6:112462098-112462671:-|nuORF	ENST00000230538.11_1_6:112462098-112462671:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	576.818607	1151.62266	2.2803	0.0013153	-1.7267	-0.00099599	0.55363	0.00031935	576.8175219747365	25.757	0.24128	25.757	25.708	25.95	0	1182	58	0.9093879	0.034914613	0.9093879	368.6035		14.151978	0.0059367	-1.7093E-05	0.00075972	NaN	42.318	301	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88584			32652	6249	18884	19400							0.05291469308599517
YTSSNKFIKI	10	Unmodified	_YTSSNKFIKI_					0	0	0			REV__nc|ENSG00000185418|A2RTX5-2|TARS3	REV__nc|ENSG00000185418|A2RTX5-2|TARS3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8347884056501	2	600.834788	1199.65502	1.4769	0.00088738	3.1575	0.0018972	4.6344	0.0027845	600.8364580963715	22.67	0.12062	22.67	22.621	22.742	0	1152	37	0.92775106	0.022023976	0.92775106	375.86847	0	8.922791						89	6	2	NaN	NaN	NaN	0.75966	1	16475	16475		3.9685	0.39873	1	9611.9	+		32653	10962	18885	19401	26056	26056					0.06318256711620052
YTSSPHIDIIT	11	Unmodified	_YTSSPHIDIIT_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	623.8193353067	2	623.819335	1245.62412	0.86834	0.00054169	-9.1837	-0.005729	-8.3154	-0.0051873	624.315465541529	24.719	0.21714	24.707	24.682	24.9	-0.012392	1161	73	0.9222442	0.04405749	0.92072475	373.48062	0	17.84195						257	10	2	NaN	NaN	NaN	0.51407	1	16910	16910		17.97	3.1157	1	57318	+		32654	8330	18886	19402	26057	26057					0.011130586067110926
YTSYPDPIL	9	Unmodified	_YTSYPDPIL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1068.5248038103	1	1068.5248	1067.51753	1.7229	0.001841	-0.035006	-3.7405E-05	1.6879	0.0018036	1068.524388082195	27.012	0.096506	27.012	26.964	27.06	0	177	118	1.5139546	0.06912124	1.5139546	307.11627	0	14.0217285						337	5	3	NaN	NaN	NaN	0.0023856	1	11438	11438		109.86	68.073	1	87604			32655	2303	18887	19403	26058	26058					-0.013530718877973413
YTSYPDPIL	9	Unmodified	_YTSYPDPIL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1068.5248038103	1	1068.5248	1067.51753	1.0551	0.0011274	-0.84922	-0.00090741	0.20588	0.00021998	1068.5248772473396	27.011	0.16896	27.001	26.953	27.122	-0.010126	177	112	1.5139546	0.065597415	1.5124352	307.11627	0	13.306885						424	8	3	NaN	NaN	NaN	0.0018626	1	11169	11169		111.43	58.654	1	96423			32656	2303	18887	19403	26059	26059					-0.013530718877973413
YTVFLTSFEGR	11	Unmodified	_YTVFLTSFEGR_					0	0	0		ENST00000377474.3_1_13:77458706-77458946:-|nuORF	ENST00000377474.3_1_13:77458706-77458946:-|nuORF	ENST00000377474.3_1_13:77458706-77458946:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	660.3351525464	2	660.335153	1318.65575	1.4284	0.00094321	-8.6704	-0.0057254	-7.2421	-0.0047822	660.3293005528642	34.612	0.16882	34.612	34.515	34.684	-0.00064468	1101	61	0.95892316	0.03663546	0.9574037	388.0986	0	14.827209						166	8	2	NaN	NaN	NaN	0.75907	1	18246	18246		3.5794	0	1	10935			32657	6707	18888	19404	26060	26060					0.00917051360647747
YTVGHWLEL	9	Unmodified	_YTVGHWLEL_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-2|THNSL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.2874740723	2	559.287474	1116.5604	1.9511	0.0010912	4.728	0.0026443	6.6791	0.0037355	559.2903929086474	22.983	0.14437	22.983	22.935	23.079	0	1200	97	0.89836043	0.058876753	0.89836043	364.26895	0	23.873444						324	7	3	NaN	NaN	NaN	0.49672	1	13537	13537		9.746	1.5012	1	37003	+		32658	13134	18889	19405	26061	26061					0.0067774296028346726
YTVIMPKRL	9	Unmodified	_YTVIMPKRL_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	560.8309945064501	2	560.830995	1119.64744	1.1272	0.00063217	-3.6148	-0.0020273	-2.4876	-0.0013951	561.3299653406267	31.959	0.14482	31.959	31.863	32.008	0	1239	58	0.87444305	0.034963727	0.87444305	354.55902	0	14.176666						120	7	2	NaN	NaN	NaN	0.64666	1	13677	13677		3.5698	0.68031	1	12605			32659	5236	18890	19406	26062	26062					0.09239825910344734
YTVIMPKRL	9	Unmodified						0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	560.830995	1119.64744	0.71286	0.0003998	-7.194	-0.0040346	-6.4812	-0.0036348	561.3278248003096	31.838	0.096575	31.833	31.761	31.857	-0.0044155	1233	55	0.87812483	0.033121705	0.8766054	356.05188		13.42981	-0.063067	-0.002593	0.0010812	NaN	3.5698	107	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10048			32660	5236	18890	19406							0.09239825910344734
YTVSGSTSA	9	Unmodified	_YTVSGSTSA_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	872.3996032967002	1	872.399603	871.392327	0.37466	0.00032685	0.11677	0.00010187	0.49142	0.00042872	872.3998695963742	31.838	0.096512	31.833	31.809	31.906	-0.0044155	1296	94	0.8394264	0.05714482	0.83790696	170.77179	0	11.625458						195	5	4	NaN	NaN	NaN	0.6907	1	5535	5535		0	0	1	15596	+		32661	11218	18891	19407	26063	26063					-0.048513640241708345
YTVTALPI	8	Unmodified	_YTVTALPI_					0	0	0		ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.25511131140007	2	439.255111	876.49567	0.92607	0.00040678	0.65981	0.00028982	1.5859	0.00069661	439.2553412285702	35.167	0.07243	35.167	35.119	35.191	-4.5776E-05	1452	52	0.74322224	0.031538427	0.7417028	302.36755	0	12.830872						81	4	2	NaN	NaN	NaN	0.84692	1	5632	5632		1.4396	0	1	6845.1			32662	1102	18892	19408	26064	26064					0.052481681542985825
YTWRNEEFR	9	Unmodified	_YTWRNEEFR_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8070935987	2	650.807094	1299.59963	1.8599	0.0012104	-11.458	-0.0074567	-9.5977	-0.0062463	650.7991721363726	17.501	0.095915	17.501	17.453	17.549	0	1122	64	0.9460945	0.038523257	0.9460945	382.96478	0	15.593658						89	5	3	NaN	NaN	NaN	0.51576	1	18766	18766		8.962	2.5321	1	5561			32663	5233	18893	19409	26065	26065					-0.03818156756165081
YTWRNEEFR	9	Unmodified						0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	650.807094	1299.59963	2.4324	0.001583	-10.557	-0.0068706	-8.1247	-0.0052876	650.8009620981047	17.81	0.071903	17.796	17.748	17.82	-0.013784	1122	34	0.9460945	0.020165801	0.9445751	382.96475		8.162811	0.14733	0.00082431	-0.00075972	NaN	8.962	53	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2912.1			32664	5233	18893	19409							-0.03818156756165081
YTYDDMEV	8	Unmodified	_YTYDDMEV_					0	0	0		ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2	ENSG00000104435|ENST00000220876|STMN2	ENSG00000104435|ENST00000220876|STMN2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1035.3975543861998	1	1035.39755	1034.39028	1.0907	0.0011293	-8.6436	-0.0089496	-7.5529	-0.0078203	1035.388916573132	30.752	0.24129	30.746	30.698	30.939	-0.0057545	207	49	1.496219	0.028395057	1.4946996	303.64252	0	5.7624817						166	11	2	NaN	NaN	NaN	0.82797	1	9744	9744		5.4659	0	1	14542			32665	1476	18894	19410	26066	26066					-0.1255416082431111
YTYEHDPITK	10	Unmodified	_YTYEHDPITK_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	633.8036852424999	2	633.803685	1265.59282	1.4787	0.00093721	-0.31374	-0.00019885	1.165	0.00073836	633.802840223973	14.501	0.11995	14.501	14.477	14.597	0	1137	28	0.9369253	0.01651001	0.9369253	379.36032	0	6.6848755						69	6	2	NaN	NaN	NaN	0.43797	1	18117	18117		22.026	14.895	1	4889.4			32666	2022	18895	19411	26067	26067					-0.02935514427417729
YTYEHDPITK	10	Unmodified	_YTYEHDPITK_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	633.8036852424999	2	633.803685	1265.59282	1.7861	0.001132	-2.888	-0.0018304	-1.1019	-0.00069837	633.8013685444627	14.524	0.071893	14.513	14.489	14.561	-0.011218	1140	28	0.93509084	0.01651001	0.9335714	378.61755	0	6.6848755						61	4	3	NaN	NaN	NaN	0.61382	1	17317	17317		13.949	8.7599	1	4346.3			32667	2022	18895	19411	26068	26068					-0.02935514427417729
YTYINQVL	8	Unmodified	_YTYINQVL_					0	0	0		ENST00000382004.7_1_9:3221866-3221968:-|nuORF	ENST00000382004.7_1_9:3221866-3221968:-|nuORF	ENST00000382004.7_1_9:3221866-3221968:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1013.5302235392002	1	1013.53022	1012.52295	2.0801	0.0021083	-2.7691	-0.0028066	-0.689	-0.00069832	1013.5269483959855	26.287	0.12062	26.276	26.252	26.373	-0.011137	201	43	1.4997677	0.024837732	1.4982482	304.44913	0	5.041992						112	6	2	NaN	NaN	NaN	0.63138	1	8902	8902		23.334	2.8858	1	9429.1			32668	6741	18896	19412	26069	26069					0.017186516946708252
YTYQWRQTI	9	Unmodified	_YTYQWRQTI_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.81438731455	2	629.814387	1257.61422	1.2428	0.00078275	-5.0508	-0.0031811	-3.808	-0.0023983	629.8118293473243	22.79	0.24104	22.776	22.655	22.896	-0.01354	1152	46	0.92775106	0.027528465	0.9262317	375.67145	0	11.147034						150	11	2	NaN	NaN	NaN	0.47587	1	17176	17176		10.605	0.24481	1	18314			32669	2119	18897	19413	26070	26070					-0.004280846080291667
YTYQWRQTI	9	Unmodified	_YTYQWRQTI_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	629.81438731455	2	629.814387	1257.61422	1.196	0.00075326	-2.909	-0.0018321	-1.713	-0.0010789	629.8123915687488	24.502	0.14479	24.489	24.393	24.537	-0.012747	1143	52	0.9332562	0.03118217	0.93173677	377.9006	0	12.626465						130	7	2	NaN	NaN	NaN	0.41766	1	17177	17177		13.003	0.95414	1	13079			32670	2119	18897	19413	26071	26071					-0.004280846080291667
YTYQWRQTI	9	Unmodified						0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	629.814387	1257.61422	1.7983	0.0011326	-4.1251	-0.0025981	-2.3268	-0.0014655	629.8121145647758	22.742	0.16883	22.742	22.67	22.838	0	1155	43	0.92591566	0.02569741	0.92591566	374.92822		10.405579	-0.017036	0.00064609	-0.000158	NaN	10.605	133	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12869			32671	2119	18897	19413							-0.004280846080291667
YTYRDYDW	8	Unmodified	_YTYRDYDW_					0	0	0		ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.24854587705	2	591.248546	1180.48254	0.95511	0.00056471	-5.4025	-0.0031942	-4.4474	-0.0026295	591.245885916869	22.452	0.14463	22.438	22.414	22.559	-0.013733	1185	76	0.90755045	0.045960188	0.906031	367.75232	0	18.623688						209	7	4	NaN	NaN	NaN	0.72043	1	15250	15250		17.78	3.3553	1	40587			32672	2899	18898	19414	26072	26072					-0.10048314695768568
YTYRDYDW	8	Unmodified						0	0	0		ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	591.248546	1180.48254	1.6366	0.00096766	-6.0289	-0.0035646	-4.3922	-0.0025969	591.2450298823096	22.453	0.14447	22.453	22.405	22.549	0	1188	76	0.90571284	0.045960188	0.90571284	367.0077		18.623688	0.0072106	-0.00032258	-0.00015909	NaN	17.78	160	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43292			32673	2899	18898	19414							-0.10048314695768568
YTYYEYDKNFY	11	Unmodified	_YTYYEYDKNFY_					0	0	0		tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.8326396472	2	784.83264	1567.65073	1.9596	0.001538	-9.5215	-0.0074728	-7.5618	-0.0059348	785.3267264309608	26.505	0.096519	26.505	26.481	26.577	0	981	37	1.0320443	0.02188909	1.0320443	417.00372	0	8.844452						62	5	2	NaN	NaN	NaN	0.76488	1	20716	20716		2.8895	1.1873	1	6711.2			32674	13855	18899	19415	26073	26073					-0.11039297292609263
YTYYEYDKNFY	11	Unmodified						0	0	0		tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	784.83264	1567.65073	1.8513	0.001453	-12.249	-0.0096134	-10.398	-0.0081604	784.824529214144	26.504	0.04825	26.494	26.47	26.518	-0.010645	981	37	1.0320443	0.02188909	1.0305248	417.00372		8.844452	-0.0054718	-0.0025167	-0.00075972	NaN	2.8895	49	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5791.5			32675	13855	18899	19415							-0.11039297292609263
YVAAGGVK	8	Unmodified	_YVAAGGVK_					0	0	0			REV__ENST00000333891.13_1_7:82580025-82580196:-|nuORF	REV__ENST00000333891.13_1_7:82580025-82580196:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	764.4301155641	1	764.430116	763.422839	1.0243	0.00078298	4.3448	0.0033213	5.369	0.0041043	764.4335452596902	31.718	0.14483	31.718	31.694	31.839	0	555	52	1.2891023	0.030539632	1.2891023	262.82883	0	6.226593						125	7	2	NaN	NaN	NaN	0.81807	1	4265	4265		6.794	1.8843	1	10524	+		32676	11753	18900	19416	26074	26074					0.03166459151509571
YVAAGGVK	8	Unmodified						0	0	0			REV__ENST00000333891.13_1_7:82580025-82580196:-|nuORF	REV__ENST00000333891.13_1_7:82580025-82580196:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	764.430116	763.422839	1.0243	0.00078298	4.3448	0.0033213	5.369	0.0041043	764.4335452596902	31.718	0.14483	31.718	31.694	31.839	0	555	52	1.2891023	0.030539632	1.2891023	262.82883		6.226593	0.0027574	-0.00043182	-0.0010366	NaN	6.794	125	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10524	+		32677	11753	18900	19416							0.03166459151509571
YVADQPGD	8	Unmodified	_YVADQPGD_					0	0	0		CON__P00735	CON__P00735	CON__P00735	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	864.3733885462	1	864.373389	863.366112	1.4924	0.00129	-4.2863	-0.0037049	-2.7938	-0.0024149	864.3697230791988	26.94	0.14478	26.94	26.915	27.06	0	408	52	1.3769034	0.030386925	1.3769034	280.15588	0	6.1828003						111	7	2	NaN	NaN	NaN	0.75561	1	5573	5573		15.175	6.0522	1	10002		+	32678	183	18901	19417	26075	26075					-0.07103633195663406
YVAGAFGA	8	Unmodified	_YVAGAFGA_					0	0	0			REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	REV__SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	755.3722663342	1	755.372266	754.36499	1.7502	0.001322	-9.7958	-0.0073995	-8.0456	-0.0060775	755.3651424702896	22.115	0.1689	22.115	22.067	22.236	0	555	82	1.2891023	0.048524976	1.2891023	262.88458	0	9.895599						283	8	3	NaN	NaN	NaN	0.83849	1	4142	4142		4.0537	1.2685	1	29615	+		32679	10138	18902	19418	26076	26076					-0.022018027739022727
YVAGSKGC	8	Unmodified	_YVAGSKGC_					0	0	0		ENST00000549185.5_3_14:31803609-31872202:-|nuORF;nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	ENST00000549185.5_3_14:31803609-31872202:-|nuORF	ENST00000549185.5_3_14:31803609-31872202:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	784.3658007478	1	784.365801	783.358524	1.8007	0.0014124	-2.4395	-0.0019134	-0.63879	-0.00050105	784.3643784087459	25.009	0.1448	25.009	24.936	25.081	0	552	43	1.2908988	0.02515161	1.2908988	263.07687	0	5.1257324						106	7	2	NaN	NaN	NaN	0.82332	1	4541	4541		6.0903	2.937	1	7403.2			32680	2605	18903	19419	26077	26077					-0.04182063996938723
YVARGNLFE	9	Unmodified	_YVARGNLFE_					0	0	0			REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.77727352675	2	534.777274	1067.53999	0.97329	0.00052049	-0.2128	-0.0001138	0.76049	0.00040669	534.7771492774777	24.671	0.12057	24.658	24.61	24.731	-0.012392	1269	91	0.8560222	0.055298448	0.85450274	347.2959	0	22.43509						322	6	4	NaN	NaN	NaN	0.36492	1	11174	11174		15.175	3.1267	1	74597	+		32681	8893	18904	19420	26078	26078					0.008925723004722386
YVARGNLFE	9	Unmodified						0	0	0			REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	REV__MGRN1|p.K152Qfs*28|1|0.09|ENSG00000102858|chr16:4657251-4657252|-/C|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	534.777274	1067.53999	0.97329	0.00052049	-0.2128	-0.0001138	0.76049	0.00040669	534.7771492774777	24.671	0.12057	24.658	24.61	24.731	-0.012392	1269	91	0.8560222	0.055298448	0.85450274	347.2959		22.43509	0.0057939	0.0015114	-0.00075972	NaN	15.175	322	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74597	+		32682	8893	18904	19420							0.008925723004722386
YVASNREDMEG	11	Unmodified	_YVASNREDMEG_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	635.7720591506001	2	635.772059	1269.52957	1.4939	0.00094977	-5.5299	-0.0035157	-4.036	-0.002566	635.7693705977747	32.804	0.21717	32.804	32.756	32.973	0	1134	112	0.9387595	0.067947686	0.9387595	380.0903	0	27.511047						649	10	6	NaN	NaN	NaN	0.47586	1	18217	18217		19.336	5.8734	1	104520			32683	4496	18905	19421	26079	26079					-0.09441823206930167
YVASNREDMEG	11	Unmodified						0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	635.772059	1269.52957	1.4108	0.00089694	-5.2083	-0.0033113	-3.7975	-0.0024143	635.7699427306953	32.803	0.21714	32.8	32.727	32.945	-0.0031052	1131	112	0.94059354	0.067940354	0.93907416	380.8329		27.508057	-0.0020814	0.00019273	0.0001573	NaN	19.336	661	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101900			32684	4496	18905	19421							-0.09441823206930167
YVCLIFLK	8	Unmodified	_YVCLIFLK_					0	0	0			REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	499.79080671345	2	499.790807	997.56706	1.7317	0.00086548	-11.663	-0.0058289	-9.9311	-0.0049635	499.7840972072071	21.681	0.096361	21.681	21.657	21.754	0	1320	31	0.824661	0.018466711	0.824661	334.87115	0	7.49881						60	5	2	NaN	NaN	NaN	0.83849	1	8493	8493		4.0537	0.4839	1	6132.3	+		32685	11819	18906	19422	26080	26080					0.06817964587298775
YVCLIFLK	8	Unmodified						0	0	0			REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	499.790807	997.56706	1.7317	0.00086548	-11.663	-0.0058289	-9.9311	-0.0049635	499.7840972072071	21.681	0.096361	21.681	21.657	21.754	0	1320	31	0.824661	0.018466711	0.824661	334.87115		7.49881	-0.0050518	-0.00034665	0.00075972	NaN	4.0537	60	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6132.3	+		32686	11819	18906	19422							0.06817964587298775
YVCLIFLK	8	Unmodified						0	0	0			REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	499.790807	997.56706	1.5132	0.00075629	-10.972	-0.0054837	-9.4588	-0.0047274	500.2854857338251	21.705	0.072254	21.691	21.667	21.74	-0.013897	1320	31	0.824661	0.018466711	0.8231416	334.87115		7.49881	0.0050518	0.00034388	-0.00075972	NaN	4.0537	71	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5993.3	+		32687	11819	18906	19422							0.06817964587298775
YVCTGLGVS	9	Unmodified	_YVCTGLGVS_					0	0	0			REV__ENSG00000105325|ENST00000441788|FZR1	REV__ENSG00000105325|ENST00000441788|FZR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	449.7205783898	2	449.720578	897.426604	0.60368	0.00027149	-1.3692	-0.00061577	-0.76555	-0.00034428	449.72041671543934	30.68	0.072378	30.68	30.656	30.728	0	1377	40	0.7895419	0.024054885	0.7895419	321.09644	0	9.782806						115	4	3	NaN	NaN	NaN	0.56671	1	6019	6019		6.8632	0	1	12924	+		32688	8954	18907	19423	26081	26081					-0.02621239136931308
YVCTGLGVS	9	Unmodified						0	0	0			REV__ENSG00000105325|ENST00000441788|FZR1	REV__ENSG00000105325|ENST00000441788|FZR1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	449.720578	897.426604	0.60368	0.00027149	-1.3692	-0.00061577	-0.76555	-0.00034428	449.72041671543934	30.68	0.072378	30.68	30.656	30.728	0	1377	40	0.7895419	0.024054885	0.7895419	321.09644		9.782806	0.0033941	-0.0001255	0.00075972	NaN	6.8632	115	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12924	+		32689	8954	18907	19423							-0.02621239136931308
YVDDGLISL	9	Unmodified	_YVDDGLISL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF;nc|ENSG00000067225|P14618-2|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	994.5091537461002	1	994.509154	993.501877	1.8099	0.0018	-0.91716	-0.00091212	0.89277	0.00088787	994.5094726212468	29.474	0.21723	29.474	29.425	29.642	0	234	70	1.4802408	0.0408417	1.4802408	300.56253	0	8.292908						253	10	3	NaN	NaN	NaN	0.10956	1	8339	8339		34.439	0	1	32890			32690	714	18908	19424	26082	26082					0.004866415951596537
YVDISIIAL	9	Unmodified	_YVDISIIAL_					0	0	0		nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1006.5819247587	1	1006.58192	1005.57465	1.2858	0.0012942	-0.75794	-0.00076293	0.52784	0.00053131	1006.5812877744577	34.202	0.21712	34.201	34.105	34.322	-0.0012474	162	97	1.5228153	0.056711793	1.5212959	309.15646	0	11.513428						249	10	2	NaN	NaN	NaN	0.056143	1	8652	8652		44.302	2.8423	1	36522			32691	394	18909	19425	26083	26083					0.0720839538855671
YVDISIIAL	9	Unmodified						0	0	0		nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200;ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	nc|ENSG00000010539|P98182-2|ZNF200	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1006.58192	1005.57465	1.3887	0.0013979	0.38448	0.00038702	1.7732	0.0017849	1006.5818362645799	34.203	0.16882	34.203	34.131	34.3	0	165	91	1.5210435	0.05316174	1.5210435	308.79675		10.792694	0.0011668	0.00088709	-0.00012617	NaN	44.302	236	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35702			32692	394	18909	19425							0.0720839538855671
YVDNSYKWAG	10	Unmodified	_YVDNSYKWAG_					0	0	0		ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	401.5207391502	3	401.520739	1201.54039	0.8302	0.00033334	-5.6714	-0.0022772	-4.8412	-0.0019438	401.51850830854374	32.031	0.072376	32.027	32.003	32.075	-0.0037613	1470	31	0.7320868	0.018565059	0.73056734	444.8836	0	11.28186						60	4	2	NaN	NaN	NaN	0.72792	1	15862	15862		6.1406	0.69068	1	6916.3			32693	1452	18910	19426	26084	26084					-0.05232052770338669
YVDPLDPSF	9	Unmodified	_YVDPLDPSF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1052.4935036818997	1	1052.4935	1051.48623	1.9814	0.0020854	0.47608	0.00050107	2.4575	0.0025865	1052.4942393493448	29.16	0.1448	29.16	29.112	29.256	0	141	103	1.5352125	0.060249925	1.5352125	311.48917	0	12.224487						243	7	2	NaN	NaN	NaN	0.089764	1	10679	10679		37.302	19.333	1	24401			32694	2805	18911	19427	26085	26085					-0.037456449219234855
YVDPLDPSF	9	Unmodified	_YVDPLDPSF_					0	0	0		ENST00000472446.1_1_17:17412858-17494940:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;nc|ENSG00000133027|Q9UBM1-3|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	ENST00000472446.1_1_17:17412858-17494940:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1052.4935036818997	1	1052.4935	1051.48623	1.3263	0.001396	1.6648	0.0017522	2.9912	0.0031482	1052.4953982088282	29.159	0.14482	29.151	29.103	29.248	-0.0077209	144	85	1.533442	0.049601793	1.5319226	311.12994	0	10.064026						223	7	2	NaN	NaN	NaN	0.58159	1	10462	10462		6.2502	1.3405	1	21239			32695	2805	18911	19427	26086	26086					-0.037456449219234855
YVDPVIGYP	9	Unmodified	_YVDPVIGYP_					0	0	0			REV__ENSG00000276023|ENST00000617516|DUSP14	REV__ENSG00000276023|ENST00000617516|DUSP14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	511.76330048425	2	511.7633	1021.51205	1.2485	0.00063895	-0.25443	-0.00013021	0.9941	0.00050874	511.76465930371825	24.888	0.2654	24.875	24.779	25.044	-0.012394	1302	91	0.8357362	0.05532837	0.8342168	339.26022	0	22.460114						505	12	4	NaN	NaN	NaN	0.23112	1	9237	9237		23.334	0	1	77742	+		32696	11424	18912	19428	26087	26087					0.0021524932037664257
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	523.79767461785	2	523.797675	1045.5808	1.7407	0.00091176	-1.0186	-0.00053354	0.72208	0.00037822	523.7969902053898	21.561	0.19283	21.561	21.513	21.705	0	1260	70	0.8615505	0.042388618	0.8615505	349.63226	0	17.202026						367	9	4	NaN	NaN	NaN	0.0021374	1	10459	10459		110.61	65.967	1	199340			32697	3298	18913	19429	26088	26088					0.059829136200733046
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	523.79767461785	2	523.797675	1045.5808	1.7902	0.00093768	-1.27	-0.00066524	0.52012	0.00027244	523.7969851416779	21.561	0.24079	21.547	21.523	21.764	-0.013895	1260	79	0.8615505	0.04793048	0.8600311	349.6323	0	19.45102						408	11	4	NaN	NaN	NaN	0.0021374	1	10250	10250		110.61	68.288	1	204900			32698	3298	18913	19429	26089	26089					0.059829136200733046
YVDRGYFSIEG	11	Unmodified	_YVDRGYFSIEG_					0	0	0		ENST00000492351.6_1_4:102029270-102092253:-|nuORF	ENST00000492351.6_1_4:102029270-102092253:-|nuORF	ENST00000492351.6_1_4:102029270-102092253:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.30913476115	2	653.309135	1304.60372	0.9239	0.00060359	6.3614	0.004156	7.2853	0.0047596	653.3126360218494	19.611	0.14442	19.597	19.549	19.693	-0.014141	1125	67	0.9442611	0.040355563	0.94274163	382.20712	0	16.334656						262	7	4	NaN	NaN	NaN	0.65577	1	18014	18014		10.36	1.4411	1	33788			32699	7271	18914	19430	26090	26090					-0.03640112053108169
YVEDLKVNW	9	Unmodified	_YVEDLKVNW_					0	0	0		nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.2980387586	2	583.298039	1164.58152	1.8784	0.0010957	7.5125	0.004382	9.3909	0.0054777	583.3028620484607	21.609	0.096252	21.595	21.571	21.667	-0.013897	1170	64	0.91673553	0.038585663	0.9152161	371.53278	0	15.637939						94	5	2	NaN	NaN	NaN	0.51184	1	14772	14772		9.1232	0.87838	1	6559.8			32700	1339	18915	19431	26091	26091					0.005817082691237374
YVEDLKVNW	9	Unmodified						0	0	0		nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	583.298039	1164.58152	1.7766	0.0010363	8.9354	0.005212	10.712	0.0062483	583.3026974682576	21.248	0.024084	21.248	21.224	21.248	0	1164	58	0.9204082	0.034907043	0.9204082	373.0212		14.147095	-0.17375	0.00083026	0.002596	NaN	9.1232	50	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4053.8			32701	1339	18915	19431							0.005817082691237374
YVEIFPFIF	9	Unmodified	_YVEIFPFIF_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|98|2|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|98|2|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|98|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.8127933658001	2	587.812793	1173.61103	1.2108	0.00071171	-5.5776	-0.0032786	-4.3668	-0.0025669	587.8099799957968	29.038	0.28961	29.031	28.91	29.2	-0.0077229	1200	79	0.89836043	0.047770202	0.896841	364.053	0	19.35846						469	13	3	NaN	NaN	NaN	0.14945	1	15051	15051		28.667	0	1	121670			32702	7848	18916	19432	26092	26092					0.031172722852716106
YVEKISFLV	9	Unmodified	_YVEKISFLV_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	549.3157001955	2	549.3157	1096.61685	1.6531	0.00090807	0.31828	0.00017484	1.9714	0.0010829	549.3157064981558	26.384	0.16892	26.373	26.324	26.493	-0.011137	1215	76	0.8891654	0.045999944	0.88764596	360.6205	0	18.65625						238	8	2	NaN	NaN	NaN	0.03533	1	12379	12379		53.14	5.1381	1	99297			32703	4760	18917	19433	26093	26093					0.07240370796921525
YVELQELVMD	10	Unmodified	_YVELQELVMD_					0	0	0		SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant;ENSG00000004939|ENST00000262418|SLC4A1	SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.8022966465	2	619.802297	1237.59004	1.2143	0.00075264	-0.31692	-0.00019643	0.8974	0.00055621	619.801743219367	17.066	0.096031	17.053	17.005	17.101	-0.013294	1179	61	0.9112251	0.03674233	0.90970564	369.04443	0	14.880554						134	5	2	NaN	NaN	NaN	0.74854	1	16733	16733		4.7291	0	1	15449			32704	315	18918	19434	26094	26094					-0.01925105876557609
YVEMVSLEEWI	11	Unmodified	_YVEMVSLEEWI_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.3365036046001	2	699.336504	1396.65845	1.4927	0.0010439	-4.3608	-0.0030497	-2.8682	-0.0020058	699.3313999048182	23.272	0.072306	23.272	23.248	23.32	0	1044	49	0.99369496	0.029257834	0.99369496	401.93854	0	11.834503						62	4	2	NaN	NaN	NaN	0.65577	1	20038	20038		10.36	2.7726	1	7009.2	+		32705	11180	18919	19435	26095	26095					-0.024008612966781584
YVEMVSLEEWI	11	Unmodified						0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	699.336504	1396.65845	1.4927	0.0010439	-4.3608	-0.0030497	-2.8682	-0.0020058	699.3313999048182	23.272	0.072306	23.272	23.248	23.32	0	1044	49	0.99369496	0.029257834	0.99369496	401.93854		11.834503	-0.005161	-0.0031659	0.00075972	NaN	10.36	62	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7009.2	+		32706	11180	18919	19435							-0.024008612966781584
YVEMVSLEEWI	11	Unmodified						0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	699.336504	1396.65845	1.5605	0.0010913	-0.94689	-0.0006622	0.6136	0.00042911	699.3364630470033	23.296	0.14474	23.283	23.258	23.403	-0.013294	1044	34	0.99369496	0.020109355	0.9921755	401.93854		8.134003	0.005161	0.0016091	-0.00075972	NaN	10.36	78	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7261.6	+		32707	11180	18919	19435							-0.024008612966781584
YVERKFVD	8	Unmodified	_YVERKFVD_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000475905.5_1_3:195016371-195022834:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.2796490402001	2	528.279649	1054.54475	1.5917	0.00084087	2.9517	0.0015593	4.5434	0.0024002	528.2821485683213	24.357	0.26532	24.357	24.285	24.55	0	1257	154	0.86339295	0.09409398	0.86339295	350.34122	0	38.180756						927	12	4	NaN	NaN	NaN	0.63138	1	10844	10844		23.334	0.21685	1	246400			32708	1954	18920	19436	26096	26096					0.0196545644323578
YVESEKWN	8	Unmodified	_YVESEKWN_					0	0	0			REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	527.7456390473501	2	527.745639	1053.47673	0.96467	0.0005091	7.7553	0.0040928	8.72	0.0046019	527.7508863907402	29.545	0.16888	29.538	29.466	29.635	-0.0070648	1365	40	0.7969414	0.024041891	0.79542196	323.3812	0	9.755646						126	8	3	NaN	NaN	NaN	0.80692	1	10553	10553		8.2903	1.4271	1	8699.5	+		32709	10872	18921	19437	26097	26097					-0.04787413207418467
YVESEKWN	8	Unmodified						0	0	0			REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	527.745639	1053.47673	1.7592	0.00092841	6.5744	0.0034696	8.3336	0.004398	528.2507156622319	29.691	0.048279	29.691	29.667	29.715	0	1371	31	0.79324204	0.018496752	0.79324204	321.8801		7.5055847	0.076351	-0.00065044	-0.00109	NaN	8.2903	40	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2579.1	+		32710	10872	18921	19437							-0.04787413207418467
YVESEKWN	8	Unmodified						0	0	0			REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	REV__TTC3|p.E1646Q|1|0.34|ENSG00000182670|chr21:37188507-37188507|G/C|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	527.745639	1053.47673	0.96467	0.0005091	7.7553	0.0040928	8.72	0.0046019	527.7508863907402	29.545	0.16888	29.538	29.466	29.635	-0.0070648	1365	40	0.7969414	0.024041891	0.79542196	323.3812		9.755646	-0.076351	0.00059599	0.00109	NaN	8.2903	126	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8699.5	+		32711	10872	18921	19437							-0.04787413207418467
YVETLSSYSDM	11	Unmodified	_YVETLSSYSDM_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.7790185154499	2	647.779019	1293.54348	1.8266	0.0011832	-6.4377	-0.0041702	-4.6111	-0.002987	647.7751645670734	25.153	0.14477	25.153	25.105	25.25	0	1098	43	0.960755	0.025642037	0.960755	388.91824	0	10.380035						129	7	2	NaN	NaN	NaN	0.64343	1	18641	18641		11.17	0	1	13815			32712	4173	18922	19438	26098	26098					-0.0915459049851961
YVEYFIEQV	9	Unmodified	_YVEYFIEQV_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.29242206445	2	595.292422	1188.57029	1.4009	0.00083397	-6.9836	-0.0041573	-5.5827	-0.0033233	595.2873086407745	26.408	0.12066	26.397	26.373	26.493	-0.011137	1146	97	0.93142134	0.05876237	0.9299019	377.39548	0	23.809479						421	6	4	NaN	NaN	NaN	0.18779	1	15494	15494		26.115	1.1539	1	182210			32713	1572	18923	19439	26099	26099					-0.016451138250204167
YVFGAPYVL	9	Unmodified	_YVFGAPYVL_					0	0	0			REV__ACTL6A-ALG3|1|fusion	REV__ACTL6A-ALG3|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	514.7762108942501	2	514.776211	1027.53787	1.7882	0.00092054	1.7972	0.00092515	3.5854	0.0018457	514.7766388202604	21.296	0.072247	21.296	21.272	21.344	0	1305	58	0.83389086	0.03505075	0.83389086	338.4847	0	14.2274475						65	4	2	NaN	NaN	NaN	0.36886	1	9679	9679		15.013	4.4079	1	6766.3	+		32714	8121	18924	19440	26100	26100					0.02520143562674093
YVFGAPYVL	9	Unmodified						0	0	0			REV__ACTL6A-ALG3|1|fusion	REV__ACTL6A-ALG3|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	514.776211	1027.53787	1.7882	0.00092054	1.7972	0.00092515	3.5854	0.0018457	514.7766388202604	21.296	0.072247	21.296	21.272	21.344	0	1305	58	0.83389086	0.03505075	0.83389086	338.4847		14.2274475	-0.0051172	-0.00253	0.00075972	NaN	15.013	65	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6766.3	+		32715	8121	18924	19440							0.02520143562674093
YVFGAPYVL	9	Unmodified						0	0	0			REV__ACTL6A-ALG3|1|fusion	REV__ACTL6A-ALG3|1|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	514.776211	1027.53787	1.372	0.00070629	6.2242	0.0032041	7.5962	0.0039104	514.7790820565433	21.32	0.096157	21.306	21.282	21.378	-0.014006	1305	40	0.83389086	0.023989916	0.8323714	338.48468		9.737732	0.0051172	0.0020278	-0.00075972	NaN	15.013	79	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7570.2	+		32716	8121	18924	19440							0.02520143562674093
YVFHDYFFYLL	11	Unmodified	_YVFHDYFFYLL_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	763.8713708772001	2	763.871371	1525.72819	1.57	0.0011993	4.8955	0.0037395	6.4655	0.0049388	763.8755980180553	26.722	0.048326	26.722	26.722	26.77	0	951	37	1.0502754	0.021865606	1.0502754	424.47217	0	8.837036						65	3	3	NaN	NaN	NaN	0.61551	1	20656	20656		13.003	4.758	1	5230.4	+		32717	10957	18925	19441	26101	26101					-0.013646145657730813
YVFHDYFFYLL	11	Unmodified						0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	763.871371	1525.72819	1.57	0.0011993	4.8955	0.0037395	6.4655	0.0049388	763.8755980180553	26.722	0.048326	26.722	26.722	26.77	0	951	37	1.0502754	0.021865606	1.0502754	424.47217		8.837036	-0.0065623	0.0010786	0.00075972	NaN	13.003	65	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5230.4	+		32718	10957	18925	19441							-0.013646145657730813
YVFIASGLI	9	Unmodified	_YVFIASGLI_					0	0	0		ENSG00000026652|ENST00000320285|AGPAT4;nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	ENSG00000026652|ENST00000320285|AGPAT4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	982.5607953861003	1	982.560795	981.553519	1.4426	0.0014174	1.0728	0.0010541	2.5154	0.0024715	982.5613993393071	32.9	0.12069	32.9	32.876	32.997	0	156	73	1.5263584	0.042511344	1.5263584	309.97827	0	8.633362						206	6	3	NaN	NaN	NaN	0.12945	1	7947	7947		31.561	0	1	28358			32719	479	18926	19442	26102	26102					0.06200430079729813
YVFRGDEL	8	Unmodified	_YVFRGDEL_					0	0	0			REV__nc|ENSG00000074219|Q15562-3|TEAD2	REV__nc|ENSG00000074219|Q15562-3|TEAD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	998.4941723839	1	998.494172	997.486896	2.7886	0.0027844	-8.3864	-0.0083738	-5.5978	-0.0055894	998.486372515069	25.491	0.31364	25.479	25.455	25.768	-0.012011	249	241	1.4713576	0.14233804	1.4698381	298.74246	0	28.900116						1340	14	5	NaN	NaN	NaN	0.67593	1	8297	8297		20.555	3.9713	1	644480	+		32720	8604	18927	19443	26103	26103					-0.011948054821914411
YVGFSNATF	9	Unmodified	_YVGFSNATF_					0	0	0		ENSG00000115419|ENST00000320717|GLS;nc|ENSG00000115419|O94925-3|GLS;ENST00000495444.1_1_2:191785873-191789325:+|nuORF;ENST00000461965.5_1_2:191775005-191792247:+|nuORF	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	503.23744987449993	2	503.23745	1004.46035	1.4516	0.00073049	-1.6943	-0.00085264	-0.24274	-0.00012216	503.2362251490463	27.374	0.21724	27.374	27.326	27.543	0	1296	46	0.8394264	0.027674615	0.8394264	340.8351	0	11.236816						230	10	3	NaN	NaN	NaN	0.25448	1	8755	8755		21.835	1.3863	1	31067			32721	2023	18928	19444	26104	26104					-0.04170494373533984
YVGFSNATF	9	Unmodified						0	0	0		ENSG00000115419|ENST00000320717|GLS;nc|ENSG00000115419|O94925-3|GLS;ENST00000495444.1_1_2:191785873-191789325:+|nuORF;ENST00000461965.5_1_2:191775005-191792247:+|nuORF	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	503.23745	1004.46035	0.93396	0.00047	-1.3802	-0.00069455	-0.4462	-0.00022454	503.2366278010518	27.373	0.1689	27.363	27.339	27.508	-0.010126	1299	46	0.8375814	0.027677655	0.83606195	340.08597		11.238037	-0.0054371	0.00013174	-0.0016822	NaN	21.835	198	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29124			32722	2023	18928	19444							-0.04170494373533984
YVGIALTL	8	Unmodified	_YVGIALTL_					0	0	0		ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	849.5080315341	1	849.508032	848.500755	0.98965	0.00084071	-0.96288	-0.00081798	0.026766	2.2738E-05	849.5070007562462	31.115	0.19303	31.115	31.091	31.284	0	372	64	1.3983358	0.037484884	1.3983358	284.59482	0	7.629059						223	9	3	NaN	NaN	NaN	0.19048	1	5368	5368		50.74	9.2851	1	26103			32723	1186	18929	19445	26105	26105					0.07044472016900727
YVGIALTL	8	Unmodified	_YVGIALTL_					0	0	0		ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	ENSG00000100036|ENST00000343605|SLC35E4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	849.5080315341	1	849.508032	848.500755	0.85407	0.00072554	0.026582	2.2582E-05	0.88065	0.00074812	849.5077970370348	31.114	0.24136	31.109	31.06	31.302	-0.0050716	372	67	1.3983358	0.03927195	1.3968164	284.59482	0	7.992798						243	11	3	NaN	NaN	NaN	0.30839	1	5235	5235		41.455	13.594	1	30494			32724	1186	18929	19445	26106	26106					0.07044472016900727
YVGLVLIV	8	Unmodified	_YVGLVLIV_					0	0	0		ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	875.5600671046002	1	875.560067	874.552791	0.87012	0.00076184	0.16987	0.00014873	1.04	0.00091057	875.5604916804592	35.554	0.07235	35.554	35.53	35.603	0	303	64	1.4393384	0.03739333	1.4393384	292.80066	0	7.6068115						119	4	2	NaN	NaN	NaN	0.60626	1	5734	5734		24.901	0	1	10813			32725	6786	18930	19446	26107	26107					0.1104963543066333
YVGNGSIF	8	Unmodified	_YVGNGSIF_					0	0	0		tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	856.4199448083	1	856.419945	855.412668	1.0741	0.00091988	5.1946	0.0044488	6.2687	0.0053687	856.4244921599333	30.438	0.096518	30.432	30.36	30.456	-0.0057545	408	70	1.3769034	0.04108548	1.375384	280.19666	0	8.360809						111	5	2	NaN	NaN	NaN	0.81251	1	5332	5332		7.5404	2.0745	1	6958.5			32726	13922	18931	19447	26108	26108					-0.02082148573720133
YVGPKSDL	8	Unmodified	_YVGPKSDL_					0	0	0			REV__ENSG00000174839|ENST00000311128|DENND6A	REV__ENSG00000174839|ENST00000311128|DENND6A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	439.7345430448	2	439.734543	877.454533	1.285	0.00056504	-11.025	-0.0048479	-9.7396	-0.0042828	439.7295517368349	15.244	0.14396	15.232	15.208	15.352	-0.012201	1521	40	0.70049703	0.024177909	0.6989776	284.98077	0	9.836212						96	7	2	NaN	NaN	NaN	0.77489	1	5644	5644		12.588	1.0394	1	8309.2	+		32727	10709	18932	19448	26109	26109					0.010904071148047478
YVGPVALA	8	Unmodified	_YVGPVALA_					0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	395.2288965608999	2	395.228897	788.44324	1.765	0.00069757	-2.0556	-0.00081244	-0.29064	-0.00011487	395.2283284573226	23.875	0.072304	23.861	23.813	23.886	-0.013048	1317	43	0.8265074	0.02584505	0.82498795	336.829	0	10.532715						71	4	2	NaN	NaN	NaN	0.84945	1	4519	4519		0	0	1	6698.7	+		32728	9037	18933	19449	26110	26110					0.04055629811307426
YVGPVALA	8	Unmodified						0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	395.228897	788.44324	1.3573	0.00053645	-2.4894	-0.0009839	-1.1321	-0.00044744	395.22747630739394	23.851	0.096323	23.851	23.803	23.899	0	1317	43	0.8265074	0.02584505	0.8265074	336.829		10.532715	-0.0054284	-0.0002246	0.00075972	NaN	0	75	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5443.4	+		32729	9037	18933	19449							0.04055629811307426
YVGPVALA	8	Unmodified						0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	395.228897	788.44324	1.765	0.00069757	-2.0556	-0.00081244	-0.29064	-0.00011487	395.2283284573226	23.875	0.072304	23.861	23.813	23.886	-0.013048	1317	43	0.8265074	0.02584505	0.82498795	336.829		10.532715	0.0054284	0.00011832	-0.00075972	NaN	0	71	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6698.7	+		32730	9037	18933	19449							0.04055629811307426
YVGPVALH	8	Unmodified	_YVGPVALH_					0	0	0			REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	855.4723147297999	1	855.472315	854.465038	1.1964	0.0010235	-10.178	-0.0087067	-8.9813	-0.0076833	855.4634033717327	24.26	0.14483	24.248	24.224	24.368	-0.012749	1206	88	0.894683	0.053331077	0.89316356	182.06917	0	10.852936						225	7	2	NaN	NaN	NaN	0.84876	1	5322	5322		0.39566	0	1	18497	+		32731	10471	18934	19450	26111	26111					0.031984345598857544
YVGRQTSYR	9	Unmodified	_YVGRQTSYR_					0	0	0			REV__RBP3|p.P529A|1|0.16|ENSG00000265203|chr10:47350069-47350069|C/G|missense_variant	REV__RBP3|p.P529A|1|0.16|ENSG00000265203|chr10:47350069-47350069|C/G|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.29107939375	2	565.291079	1128.56761	0.80479	0.00045494	8.4342	0.0047678	9.239	0.0052227	565.2966941821172	31.355	0.12065	31.35	31.277	31.398	-0.0050716	1206	52	0.894683	0.031263053	0.89316356	362.73074	0	12.674957						101	6	2	NaN	NaN	NaN	0.49672	1	13588	13588		9.746	0.13435	1	14626	+		32732	11405	18935	19451	26112	26112					0.008464755607064944
YVHAGGGGG	9	Unmodified	_YVHAGGGGG_					0	0	0		ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000466835.5_1_2:74685568-74686813:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	774.3529278756002	1	774.352928	773.345651	1.4899	0.0011537	-1.333	-0.0010322	0.15685	0.00012146	774.3510167055476	29.786	0.12064	29.779	29.731	29.852	-0.0070648	552	61	1.2908988	0.035934687	1.2893794	263.1355	0	7.3249207						102	6	2	NaN	NaN	NaN	0.58547	1	4328	4328		6.0903	1.6772	1	7330.9			32733	7117	18936	19452	26113	26113					-0.05008759064787682
YVHDGSAG	8	Unmodified	_YVHDGSAG_					0	0	0			REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	805.3475081467001	1	805.347508	804.340232	1.9494	0.0015699	-5.1944	-0.0041833	-3.245	-0.0026134	805.3432178372481	19.204	0.14397	19.204	19.156	19.3	0	498	46	1.3232021	0.026895046	1.3232021	269.53894	0	5.4785767						107	7	2	NaN	NaN	NaN	0.76633	1	4792	4792		13.737	5.4468	1	9457.3	+		32734	11151	18937	19453	26114	26114					-0.06976482647280591
YVHDGSAG	8	Unmodified						0	0	0			REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	805.347508	804.340232	1.9494	0.0015699	-5.1944	-0.0041833	-3.245	-0.0026134	805.3432178372481	19.204	0.14397	19.204	19.156	19.3	0	498	46	1.3232021	0.026895046	1.3232021	269.53894		5.4785767	0.008094	-0.00031229	0.00075972	NaN	13.737	107	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9457.3	+		32735	11151	18937	19453							-0.06976482647280591
YVHEKHRPHK	10	Unmodified	_YVHEKHRPHK_					0	0	0		PRDM14|p.H453Y|1|0.3|ENSG00000147596|chr8:70058669-70058669|G/A|missense_variant	PRDM14|p.H453Y|1|0.3|ENSG00000147596|chr8:70058669-70058669|G/A|missense_variant	PRDM14|p.H453Y|1|0.3|ENSG00000147596|chr8:70058669-70058669|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	665.85999483645	2	665.859995	1329.70544	0.70993	0.00047272	-10.119	-0.0067377	-9.4089	-0.006265	665.853384564279	38.684	0.096146	38.684	38.588	38.684	0	1092	52	0.9644182	0.031131744	0.9644182	390.2889	0	12.598663						125	5	3	NaN	NaN	NaN	0.61246	1	19250	19250		14.042	0.57854	1	13960			32736	8103	18938	19454	26115	26115					0.05377223879963822
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.2498373557501	2	517.249837	1032.48512	2.4262	0.001255	-2.0529	-0.0010619	0.37332	0.0001931	517.2488972391516	18.94	0.21595	18.94	18.892	19.108	0	1401	85	0.77473325	0.051858366	0.77473325	314.45212	0	21.048492						525	10	4	NaN	NaN	NaN	0.057516	1	9876	9876		76.264	37.656	1	213890			32737	3230	18939	19455	26116	26116					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	517.2498373557501	2	517.249837	1032.48512	2.4159	0.0012496	-1.8558	-0.00095993	0.56003	0.00028967	517.2490024018923	18.94	0.26392	18.94	18.868	19.132	0	1260	64	0.8615505	0.038702607	0.8615505	349.6899	0	15.708801						371	12	5	NaN	NaN	NaN	7.4335E-06	1	9877	9877		129.43	69.982	1	193150			32738	3230	18939	19455	26117	26117					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2498373557501	2	517.249837	1032.48512	1.8213	0.00094208	-1.0699	-0.0005534	0.75143	0.00038868	517.2494322428022	19.058	0.24028	19.044	18.972	19.212	-0.014059	1404	85	0.77288127	0.051858366	0.7713618	313.70044	0	21.048492						625	11	5	NaN	NaN	NaN	0.12449	1	9668	9668		59.445	26.992	1	229330			32739	3230	18939	19455	26118	26118					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.2498373557501	2	517.249837	1032.48512	1.6631	0.00086022	-0.28517	-0.0001475	1.3779	0.00071271	517.2497704611494	19.058	0.1922	19.044	18.972	19.164	-0.014059	1263	70	0.85970795	0.042402327	0.8581885	348.94202	0	17.21045						276	9	2	NaN	NaN	NaN	0.078841	1	9669	9669		69.745	33.708	1	128950			32740	3230	18939	19455	26119	26119					-0.02982137771800808
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(41)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2472946668	2	525.247295	1048.48004	1.605	0.00084303	-2.7043	-0.0014204	-1.0993	-0.0005774	525.2459311987758	15.63	0.21605	15.63	15.606	15.822	0	1281	52	0.84864825	0.031347692	0.84864825	344.38394	0	12.720978						283	10	3	NaN	NaN	NaN	0.30832	1	10559	10559		41.46	28.872	1	67921			32741	3230	18939	19456	26120	26120		358			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(81)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	525.2472946668	2	525.247295	1048.48004	1.5826	0.00083127	-1.058	-0.00055572	0.52462	0.00027555	525.2469191390323	15.558	0.048009	15.558	15.51	15.558	0	1422	70	0.7617651	0.04262799	0.7617651	309.1265	0	17.298553						198	3	4	NaN	NaN	NaN	0.044274	1	10560	10560		81.001	55.249	1	62881			32742	3230	18939	19456	26121	26121		358			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(50)VTHF	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	525.2472946668	2	525.247295	1048.48004	1.9043	0.0010002	-1.4914	-0.00078335	0.4129	0.00021688	525.246489644732	15.724	0.31156	15.711	15.567	15.879	-0.012611	1281	49	0.84864825	0.029502094	0.8471288	344.38394	0	11.972046						450	14	4	NaN	NaN	NaN	0.19946	1	10342	10342		50.033	35.02	1	108140			32743	3230	18939	19456	26122	26122		358			-0.04226441634409639
YVHTPCLRHGN	11	Unmodified	_YVHTPCLRHGN_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.8169383910001	2	648.816938	1295.61932	1.6262	0.0010551	0.9758	0.00063312	2.602	0.0016882	648.8171018617171	24.816	0.24133	24.816	24.767	25.009	0	1140	61	0.93509084	0.036682904	0.93509084	378.52283	0	14.849152						247	11	2	NaN	NaN	NaN	0.7072	1	18699	18699		6.9844	1.2902	1	33843	+		32744	9415	18940	19457	26123	26123					-0.016661040170220076
YVHTPCLRHGN	11	Unmodified						0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	648.816938	1295.61932	1.6262	0.0010551	0.9758	0.00063312	2.602	0.0016882	648.8171018617171	24.816	0.24133	24.816	24.767	25.009	0	1140	61	0.93509084	0.036682904	0.93509084	378.52283		14.849152	-0.12662	0.0009707	0.001677	NaN	6.9844	247	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33843	+		32745	9415	18940	19457							-0.016661040170220076
YVHTPCLRHGN	11	Unmodified						0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	648.816938	1295.61932	2.3708	0.0015382	-1.5788	-0.0010243	0.79201	0.00051387	648.8155372310066	25.081	0.048243	25.069	25.045	25.093	-0.012011	1143	31	0.9332562	0.018343449	0.93173677	377.78018		7.4253845	0.12662	-0.0023442	-0.001677	NaN	6.9844	34	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3007.4	+		32746	9415	18940	19457							-0.016661040170220076
YVIASCLISDT	11	Unmodified	_YVIASCLISDT_					0	0	0		nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	592.79701430335	2	592.797014	1183.57948	0.80952	0.00047988	7.8659	0.0046629	8.6754	0.0051428	592.8017357703301	33.721	0.19305	33.721	33.624	33.817	0	1239	103	0.87444305	0.06253624	0.87444305	354.32596	0	25.339783						422	9	5	NaN	NaN	NaN	0.32978	1	15962	15962		24.562	1.2276	1	100970			32747	7937	18941	19458	26124	26124					-0.004970885309830919
YVIASCLISDT	11	Unmodified						0	0	0		nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	nc|ENSG00000124780|Q96T54-4|KCNK17	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.797014	1183.57948	0.46619	0.00027636	8.8696	0.0052579	9.3358	0.0055342	592.8017502791107	33.72	0.31369	33.718	33.621	33.935	-0.0018463	1236	106	0.876284	0.064358115	0.8747646	355.07193		26.078064	-0.0015528	0.00066123	0.00016078	NaN	24.562	485	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101100			32748	7937	18941	19458							-0.004970885309830919
YVICWLPY	8	Unmodified	_YVICWLPY_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.7647889282001	2	528.764789	1055.51502	1.9695	0.0010414	-3.3663	-0.00178	-1.3969	-0.00073863	528.7638171564411	22.983	0.096352	22.983	22.911	23.007	0	1299	79	0.8375814	0.047946036	0.8375814	339.86362	0	19.454956						202	5	4	NaN	NaN	NaN	0.77734	1	10880	10880		12.26	0	1	26024			32749	4648	18942	19459	26125	26125					-0.010511988264397587
YVIEPHWYNF	10	Unmodified	_YVIEPHWYNF_					0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	684.3245878601001	2	684.324588	1366.63462	0.85382	0.00058429	-6.0667	-0.0041516	-5.2129	-0.0035673	684.3187118238275	33.671	0.16891	33.67	33.621	33.79	-0.0018463	1080	43	0.9717421	0.02562821	0.97022265	393.1435	0	10.368591						147	8	3	NaN	NaN	NaN	0.507	1	18834	18834		19.164	4.7386	1	13691	+		32750	9977	18943	19460	26126	26126					-0.03402913948184505
YVIEPHWYNF	10	Unmodified						0	0	0			REV__ENSG00000148399|ENST00000277540|DPH7	REV__ENSG00000148399|ENST00000277540|DPH7	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	684.324588	1366.63462	0.85382	0.00058429	-6.0667	-0.0041516	-5.2129	-0.0035673	684.3187118238275	33.671	0.16891	33.67	33.621	33.79	-0.0018463	1080	43	0.9717421	0.02562821	0.97022265	393.1435		10.368591	0.010518	0.00012869	-0.00075972	NaN	19.164	147	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13691	+		32751	9977	18943	19460							-0.03402913948184505
YVIGGWTP	8	Unmodified	_YVIGGWTP_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	892.4563303146	1	892.45633	891.449054	1.6281	0.001453	5.8553	0.0052256	7.4834	0.0066786	892.4625813829921	36.228	0.19275	36.229	36.157	36.349	0.0011024	369	43	1.4001206	0.024988651	1.3986012	284.73907	0	5.0818787						145	9	2	NaN	NaN	NaN	0.66957	1	5829	5829		20.952	0.39703	1	8983.3			32752	5516	18944	19461	26127	26127					-0.001012716770105726
YVIGLLVV	8	Unmodified	_YVIGLLVV_					0	0	0		ENSG00000176547|ENST00000319856|OR4C3	ENSG00000176547|ENST00000319856|OR4C3	ENSG00000176547|ENST00000319856|OR4C3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	875.5600671046001	1	875.560067	874.552791	0.53862	0.00047159	2.1765	0.0019057	2.7151	0.0023773	875.5621567343247	35.553	0.096497	35.553	35.529	35.626	0.00052643	300	52	1.4411188	0.030261159	1.4395994	293.16284	0	6.155945						95	5	2	NaN	NaN	NaN	0.60626	1	5602	5602		24.901	6.8666	1	8605.7			32753	5029	18945	19462	26128	26128					0.1104963543065196
YVKEHGGEL	9	Unmodified	_YVKEHGGEL_					0	0	0			REV__ENST00000295112.13_1_2:55509501-55511570:+|nuORF	REV__ENST00000295112.13_1_2:55509501-55511570:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1031.5156361075	1	1031.51564	1030.50836	0.9189	0.00094786	6.6715	0.0068818	7.5904	0.0078296	1031.5252708826383	31.187	0.04825	31.187	31.139	31.187	0	144	82	1.533442	0.047817588	1.533442	311.2119	0	9.70459						157	3	3	NaN	NaN	NaN	0.45297	1	9795	9795		11.548	1.4969	1	19223	+		32754	11631	18946	19463	26129	26129					-0.005674204534670935
YVKNHPTIM	9	Unmodified	_YVKNHPTIM_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	551.7893266570001	2	551.789327	1101.5641	1.4681	0.00081011	-11.403	-0.0062918	-9.9344	-0.0054817	551.7838646097545	29.932	0.0965	29.932	29.908	30.004	0	1242	58	0.87260187	0.034986377	0.87260187	353.88315	0	14.18869						130	5	3	NaN	NaN	NaN	0.58159	1	12909	12909		6.2502	0.55606	1	12698	+		32755	11148	18947	19464	26130	26130					0.017380894624920984
YVKNHPTIM	9	Unmodified						0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	551.789327	1101.5641	1.4681	0.00081011	-11.403	-0.0062918	-9.9344	-0.0054817	551.7838646097545	29.932	0.0965	29.932	29.908	30.004	0	1242	58	0.87260187	0.034986377	0.87260187	353.88315		14.18869	0.0036548	-0.0019344	-0.00016088	NaN	6.2502	130	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12698	+		32756	11148	18947	19464							0.017380894624920984
YVKNHPTIM	9	Unmodified						0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	551.789327	1101.5641	1.0786	0.00059518	-7.7905	-0.0042987	-6.7118	-0.0037035	551.7843061748785	29.931	0.096504	29.925	29.901	29.997	-0.0064087	1239	49	0.87444305	0.02945429	0.8729236	354.62982		11.945129	-0.0036548	0.0020518	0.00016088	NaN	6.2502	115	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11448	+		32757	11148	18947	19464							0.017380894624920984
YVKQGPQFAVQ	11	Unmodified	_YVKQGPQFAVQ_					0	0	0			REV__ZNF395|p.S231Rfs*46|1|0.35|ENSG00000186918|chr8:28353302-28353302|G/-|frameshift_variant	REV__ZNF395|p.S231Rfs*46|1|0.35|ENSG00000186918|chr8:28353302-28353302|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.22766709610005	3	422.227667	1263.66117	1.8842	0.00079556	6.532	0.002758	8.4162	0.0035535	422.22979792848554	17.909	0.047926	17.909	17.885	17.933	0	1446	40	0.7469324	0.024109721	0.7469324	453.65207	0	14.643127						77	3	3	NaN	NaN	NaN	0.57804	1	18085	18085		10.861	0	1	8685.2	+		32758	11014	18948	19465	26131	26131					0.0398877494315002
YVKQGPQFAVQ	11	Unmodified						0	0	0			REV__ZNF395|p.S231Rfs*46|1|0.35|ENSG00000186918|chr8:28353302-28353302|G/-|frameshift_variant	REV__ZNF395|p.S231Rfs*46|1|0.35|ENSG00000186918|chr8:28353302-28353302|G/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	422.227667	1263.66117	1.8842	0.00079556	6.532	0.002758	8.4162	0.0035535	422.22979792848554	17.909	0.047926	17.909	17.885	17.933	0	1446	40	0.7469324	0.024109721	0.7469324	453.65207		14.643127	-0.063529	-0.00058335	0.00075972	NaN	10.861	77	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8685.2	+		32759	11014	18948	19465							0.0398877494315002
YVKYYEYQ	8	Unmodified	_YVKYYEYQ_					0	0	0			REV__ENSG00000125266|ENST00000646441|EFNB2	REV__ENSG00000125266|ENST00000646441|EFNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.2714896571	2	578.27149	1154.52843	0.93981	0.00054347	-1.8436	-0.0010661	-0.90377	-0.00052262	578.7727912523607	32.61	0.24135	32.607	32.486	32.727	-0.0031052	1257	115	0.86339295	0.0699237	0.8618735	349.9499	0	28.3414						376	11	3	NaN	NaN	NaN	0.69898	1	14460	14460		19.118	7.948	1	38500	+		32760	9391	18949	19466	26132	26132					-0.042656695135292466
YVLAKRARRC	10	Unmodified	_YVLAKRARRC_					0	0	0		ENSG00000066654|ENST00000396083|THUMPD1;ENST00000569768.1_1_16:20750201-20753061:-|nuORF	ENSG00000066654|ENST00000396083|THUMPD1	ENSG00000066654|ENST00000396083|THUMPD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.3613161049001	2	618.361316	1234.70808	1.1853	0.00073295	-1.9252	-0.0011905	-0.73993	-0.00045755	618.3606795039616	23.875	0.12048	23.875	23.827	23.947	0	1113	52	0.9515937	0.031158626	0.9515937	385.40356	0	12.619507						121	6	3	NaN	NaN	NaN	0.6778	1	17405	17405		8.2448	4.675	1	9839.6			32761	707	18950	19467	26133	26133					0.1001135601329679
YVLCGSLIL	9	Unmodified	_YVLCGSLIL_					0	0	0			REV__nc|ENSG00000166881|O14524-2|NEMP1	REV__nc|ENSG00000166881|O14524-2|NEMP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	980.5485161403002	1	980.548516	979.54124	1.2192	0.0011955	0.20567	0.00020167	1.4249	0.0013971	980.5486643062047	33.309	0.16888	33.307	33.259	33.428	-0.0024757	138	94	1.5369828	0.054895997	1.5354633	312.1448	0	11.148773						352	8	4	NaN	NaN	NaN	0.14945	1	7710	7710		28.667	2.9147	1	80805	+		32762	10451	18951	19468	26134	26134					0.05065070345028744
YVLDATVW	8	Unmodified	_YVLDATVW_					0	0	0			REV__GDPD5|p.S507Y|1|0.22|ENSG00000158555|chr11:75439915-75439915|G/T|missense_variant	REV__GDPD5|p.S507Y|1|0.22|ENSG00000158555|chr11:75439915-75439915|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	966.4931097514	1	966.49311	965.485833	1.2174	0.0011767	0.51548	0.00049821	1.7329	0.0016749	966.4934549168172	32.9	0.16897	32.9	32.852	33.021	0	288	88	1.4482387	0.05157268	1.4482387	294.18124	0	10.475983						206	8	2	NaN	NaN	NaN	0.50567	1	7500	7500		30.791	1.1928	1	20753	+		32763	12997	18952	19469	26135	26135					0.0017098014889143087
YVLGAQLLV	9	Unmodified	_YVLGAQLLV_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	975.5873444876001	1	975.587344	974.580068	1.0137	0.00098898	0.75725	0.00073876	1.771	0.0017277	975.5882319837816	31.259	0.072357	31.259	31.211	31.284	0	177	49	1.5139546	0.028365016	1.5139546	307.48975	0	5.761017						88	4	2	NaN	NaN	NaN	0.61413	1	7749	7749		4.9097	0	1	8178.5	+		32764	13088	18953	19470	26136	26136					0.09176118971049618
YVLGAQLLV	9	Unmodified	_YVLGAQLLV_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	975.5873444876001	1	975.587344	974.580068	1.3938	0.0013598	-0.4285	-0.00041804	0.96532	0.00094176	975.5862701404028	30.92	0.14484	30.915	30.843	30.988	-0.0050716	174	55	1.5157272	0.0319072	1.5142077	307.84976	0	6.480438						155	7	2	NaN	NaN	NaN	0.42773	1	7589	7589		12.588	0	1	16023	+		32765	13088	18953	19470	26137	26137					0.09176118971049618
YVLGAQLLV	9	Unmodified						0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	975.587344	974.580068	1.0137	0.00098898	0.75725	0.00073876	1.771	0.0017277	975.5882319837816	31.259	0.072357	31.259	31.211	31.284	0	177	49	1.5139546	0.028365016	1.5139546	307.48975		5.761017	0.015112	9.5187E-05	-0.00012654	NaN	4.9097	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8178.5	+		32766	13088	18953	19470							0.09176118971049618
YVLGAQLLV	9	Unmodified						0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	975.587344	974.580068	1.3117	0.0012797	0.58878	0.0005744	1.9005	0.0018541	975.5883877154786	31.234	0.072405	31.229	31.181	31.253	-0.0050716	174	52	1.5157272	0.030136228	1.5142077	307.84976		6.120758	-0.015112	-6.9172E-05	0.00012654	NaN	4.9097	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11464	+		32767	13088	18953	19470							0.09176118971049618
YVLGLKKG	8	Unmodified	_YVLGLKKG_					0	0	0		ENST00000460276.5_1_17:16075166-16075322:-|nuORF	ENST00000460276.5_1_17:16075166-16075322:-|nuORF	ENST00000460276.5_1_17:16075166-16075322:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	439.2789207587	2	439.278921	876.543289	1.4353	0.0006305	-3.9846	-0.0017503	-2.5493	-0.0011199	439.27715575136006	19.54	0.024008	19.54	19.54	19.564	0	1452	34	0.74322224	0.02040714	0.74322224	302.36734	0	8.302338						39	2	2	NaN	NaN	NaN	0.84876	1	5762	5762		0.39566	0	1	3285.5			32768	7071	18954	19471	26138	26138					0.10007867145134242
YVLGSVLA	8	Unmodified	_YVLGSVLA_					0	0	0		ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	821.4767314057001	1	821.476731	820.469455	1.6842	0.0013835	2.0852	0.001713	3.7694	0.0030965	821.4782836183055	27.109	0.096525	27.109	27.084	27.181	0	393	61	1.3858368	0.0357399	1.3858368	282.20456	0	7.277893						98	5	2	NaN	NaN	NaN	0.81214	1	5030	5030		7.5902	0	1	7879.5			32769	2386	18955	19472	26139	26139					0.05203898982813371
YVLGYLLTW	9	Unmodified	_YVLGYLLTW_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.31041785235	2	564.310418	1126.60628	1.1741	0.00066255	3.3426	0.0018862	4.5167	0.0025488	564.3125670361392	26.553	0.26544	26.542	26.494	26.759	-0.010645	1173	73	0.91489893	0.044095516	0.9133795	370.9347	0	17.87799						256	12	2	NaN	NaN	NaN	0.3389	1	13528	13528		16.417	4.8682	1	38010			32770	8012	18956	19473	26140	26140					0.04804388142520111
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	412.72038142455006	2	412.720381	823.42621	0.54311	0.00022415	-0.091183	-3.7633E-05	0.45193	0.00018652	412.72018934924444	35.12	0.12067	35.12	35.096	35.217	0	1401	40	0.77473325	0.024073124	0.77473325	315.50024	0	9.803497						162	6	3	NaN	NaN	NaN	0.79379	1	5068	5068		10.052	0	1	23490			32771	4261	18957	19474	26141	26141					0.0074338593387892615
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	824.4334863825002	1	824.433486	823.42621	1.6661	0.0013736	0.64992	0.00053581	2.316	0.0019094	824.4335386959921	36.278	0.096481	36.278	36.181	36.278	0	444	76	1.3554435	0.04472959	1.3554435	275.99908	0	9.107971						131	5	2	NaN	NaN	NaN	0.79379	1	5070	5070		10.052	0	1	8242.2			32772	4261	18957	19474	26142	26142					0.0074338593387892615
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	412.72038142455006	2	412.720381	823.42621	0.7991	0.0003298	-0.17304	-7.1418E-05	0.62606	0.00025839	412.72009492754466	35.119	0.12069	35.119	35.094	35.215	-4.5776E-05	1398	40	0.77658504	0.024070561	0.7750656	316.25436	0	9.802429						132	6	3	NaN	NaN	NaN	0.79379	1	4948	4948		10.052	0	1	18172			32773	4261	18957	19474	26143	26143					0.0074338593387892615
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4334863825002	1	824.433486	823.42621	1.5815	0.0013038	0.46146	0.00038044	2.0429	0.0016843	824.4339465750903	36.348	0.14445	36.35	36.254	36.398	0.0016747	441	85	1.3572328	0.050083876	1.3557134	276.36343	0	10.198212						251	7	2	NaN	NaN	NaN	0.75682	1	4949	4949		15.013	0	1	19833			32774	4261	18957	19474	26144	26144					0.0074338593387892615
YVLKGGGM	8	Unmodified	_YVLKGGGM_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	824.4334863825002	1	824.433486	823.42621	1.7121	0.0014115	0.45888	0.00037832	2.171	0.0017898	824.4339293198742	35.119	0.38597	35.119	35.046	35.432	-4.5776E-05	441	208	1.3572328	0.12363851	1.3557134	276.36343	0	25.175598						1452	17	4	NaN	NaN	NaN	0.75682	1	4950	4950		15.013	0	1	578900			32775	4261	18957	19474	26145	26145					0.0074338593387892615
YVLLEVNGQ	9	Unmodified	_YVLLEVNGQ_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	517.7794818647001	2	517.779482	1033.54441	1.2369	0.00064044	-1.134	-0.00058717	0.10288	5.327E-05	517.7791045257867	24.429	0.072418	24.417	24.393	24.465	-0.012749	1278	49	0.85049206	0.029505253	0.8489726	345.19678	0	11.975555						92	4	2	NaN	NaN	NaN	0.14301	1	9725	9725		29.598	2.8668	1	15490			32776	4964	18958	19475	26146	26146					0.028980367233771176
YVLLEVNGQ	9	Unmodified						0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	517.779482	1033.54441	1.3937	0.00072163	-2.2731	-0.001177	-0.87943	-0.00045535	517.7779478827221	24.43	0.12063	24.43	24.406	24.526	0	1281	70	0.84864825	0.042411506	0.84864825	344.44846		17.213928	0.0064839	-0.00067838	-0.00016217	NaN	29.598	159	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19470			32777	4964	18958	19475							0.028980367233771176
YVLQLHPW	8	Unmodified	_YVLQLHPW_					0	0	0			REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	528.28727710705	2	528.287277	1054.56	1.6372	0.00086491	7.332	0.0038734	8.9692	0.0047383	528.2905181181417	21.633	0.07234	21.633	21.609	21.681	0	1266	40	0.85786515	0.023953617	0.85786515	348.0981	0	9.719696						58	4	2	NaN	NaN	NaN	0.8439	1	10849	10849		3.1533	0	1	6046.1	+		32778	8559	18959	19476	26147	26147					0.034903680310890195
YVLQLHPW	8	Unmodified						0	0	0			REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	528.287277	1054.56	1.6372	0.00086491	7.332	0.0038734	8.9692	0.0047383	528.2905181181417	21.633	0.07234	21.633	21.609	21.681	0	1266	40	0.85786515	0.023953617	0.85786515	348.0981		9.719696	0.0069691	0.00035606	-0.00016167	NaN	3.1533	58	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6046.1	+		32779	8559	18959	19476							0.034903680310890195
YVLQLHPW	8	Unmodified						0	0	0			REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	REV__ENST00000467447.1_1_6:42974755-42975804:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	528.287277	1054.56	1.3801	0.0007291	6.7421	0.0035618	8.1222	0.0042909	528.2905078454133	21.633	0.072222	21.619	21.619	21.691	-0.013895	1263	40	0.85970795	0.023958802	0.8581885	348.8459		9.721802	-0.0069691	-0.0002672	0.00016167	NaN	3.1533	66	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7312.6	+		32780	8559	18959	19476							0.034903680310890195
YVLRLEPLL	9	Unmodified	_YVLRLEPLL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.34479198595	2	558.344792	1114.67503	1.4269	0.00079672	-0.6055	-0.00033808	0.82143	0.00045864	558.344201723146	29.208	0.21718	29.208	29.136	29.353	0	1179	49	0.9112251	0.02939701	0.9112251	369.493	0	11.920227						275	10	4	NaN	NaN	NaN	0.03618	1	13478	13478		52.78	0	1	71632			32781	4436	18960	19477	26148	26148					0.1222805244221945
YVLRLEPLL	9	Unmodified	_YVLRLEPLL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.34479198595	2	558.344792	1114.67503	1.1525	0.00064352	-2.3538	-0.0013142	-1.2013	-0.00067073	558.3437875064582	29.231	0.2172	29.224	29.151	29.368	-0.0077209	1179	58	0.9112251	0.034910858	0.90970564	369.493	0	14.156006						172	10	2	NaN	NaN	NaN	0.10945	1	13088	13088		34.454	0	1	57510			32782	4436	18960	19477	26149	26149					0.1222805244221945
YVMNDYGFIY	10	Oxidation (M)	_YVM(Oxidation (M))NDYGFIY_		YVM(1)NDYGFIY		YVM(40)NDYGFIY	0	0	1		ENSG00000104055|ENST00000220420|TGM5;nc|ENSG00000104055|O43548-2|TGM5;TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	ENSG00000104055|ENST00000220420|TGM5	ENSG00000104055|ENST00000220420|TGM5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.7813642391501	2	650.781364	1299.54818	2.1493	0.0013987	-2.1466	-0.001397	0.0027048	1.7602E-06	650.7799496372551	22.621	0.33773	22.621	22.549	22.887	0	1131	82	0.94059354	0.04954064	0.94059354	380.7382	0	20.053314						707	15	4	NaN	NaN	NaN	0.14619	1	18763	18763		40.154	7.701	1	387200			32783	1459	18961	19478	26150	26150		165			-0.08961661565058421
YVMNDYGFIY	10	Oxidation (M)						0	0	1		ENSG00000104055|ENST00000220420|TGM5;nc|ENSG00000104055|O43548-2|TGM5;TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	ENSG00000104055|ENST00000220420|TGM5	ENSG00000104055|ENST00000220420|TGM5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	650.781364	1299.54818	1.5996	0.001041	-1.6798	-0.0010932	-0.080206	-5.2197E-05	650.7803727342965	22.645	0.40989	22.631	22.511	22.921	-0.01354	1131	64	0.94059354	0.038519144	0.93907416	380.7382		15.59198	0.0049913	0.00038255	-0.00075972	NaN	40.154	638	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373870			32784	1459	18961	19478				165			-0.08961661565058421
YVNATGNQIL	10	Unmodified	_YVNATGNQIL_					0	0	0			REV__HCAR3|p.C177Y|1|0.36|ENSG00000255398|chr12:122716208-122716208|C/T|missense_variant	REV__HCAR3|p.C177Y|1|0.36|ENSG00000255398|chr12:122716208-122716208|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	546.7878382130501	2	546.787838	1091.56112	1.235	0.0006753	-3.6562	-0.0019991	-2.4211	-0.0013238	546.7860145655824	22.018	0.16858	22.004	21.956	22.125	-0.013895	1275	46	0.85233563	0.027650714	0.8508162	345.70328	0	11.214996						104	8	2	NaN	NaN	NaN	0.47445	1	12154	12154		20.513	0	1	37134	+		32785	13005	18962	19479	26151	26151					0.019005376093446102
YVNVFTISSCC	11	Unmodified	_YVNVFTISSCC_					0	0	0			REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.2753917917502	2	618.275392	1234.53623	1.6584	0.0010253	-1.4217	-0.00087898	0.23674	0.00014637	618.2747435066217	25.901	0.12067	25.89	25.841	25.962	-0.0116	1179	55	0.9112251	0.033075213	0.90970564	369.0545	0	13.395752						223	6	4	NaN	NaN	NaN	0.57257	1	16653	16653		15.822	1.3969	1	54368	+		32786	9112	18963	19480	26152	26152					-0.0716560157989079
YVPACMCAFV	10	Unmodified	_YVPACMCAFV_					0	0	0			REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2397664479	2	552.239766	1102.46498	0.57543	0.00031778	0.54433	0.0003006	1.1198	0.00061838	552.7399520002056	31.091	0.096529	31.091	31.018	31.115	0	1281	58	0.84864825	0.03502047	0.84864825	344.16525	0	14.202393						131	5	3	NaN	NaN	NaN	0.7459	1	12920	12920		4.9097	0.18066	1	6992.3	+		32787	11526	18964	19481	26153	26153					-0.08215392818283362
YVPACMCAFV	10	Unmodified						0	0	0			REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	REV__ENST00000256682.8_1_12:49332075-49332474:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	552.239766	1102.46498	0.57543	0.00031778	0.54433	0.0003006	1.1198	0.00061838	552.7399520002056	31.091	0.096529	31.091	31.018	31.115	0	1281	58	0.84864825	0.03502047	0.84864825	344.16525		14.202393	0	0	0	NaN	4.9097	131	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6992.3	+		32788	11526	18964	19481							-0.08215392818283362
YVPCEPQGL	9	Unmodified	_YVPCEPQGL_					0	0	0		ENSG00000161850|ENST00000257974|KRT82;CON__Q9NSB4	ENSG00000161850|ENST00000257974|KRT82	ENSG00000161850|ENST00000257974|KRT82	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.4709941008001	1	1005.47099	1004.46372	2.2278	0.00224	-6.1478	-0.0061815	-3.9201	-0.0039415	1005.4650123210643	25.877	0.19304	25.877	25.732	25.926	0	264	79	1.4624695	0.04622042	1.4624695	296.90973	0	9.383636						297	9	2	NaN	NaN	NaN	0.16171	1	8754	8754		27.789	5.9538	1	37779		+	32789	226	18965	19482	26154	26154					-0.038335675911639555
YVPCEPQGL	9	Unmodified						0	0	0		ENSG00000161850|ENST00000257974|KRT82;CON__Q9NSB4	ENSG00000161850|ENST00000257974|KRT82	ENSG00000161850|ENST00000257974|KRT82	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1005.47099	1004.46372	2.3168	0.0023295	-4.4946	-0.0045192	-2.1778	-0.0021897	1005.4676266561056	25.877	0.048281	25.865	25.865	25.914	-0.0116	249	70	1.4713576	0.0408895	1.4698381	298.71417		8.301331	-0.0059265	0.00094571	0.0036843	NaN	27.789	107	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13255		+	32790	226	18965	19482							-0.038335675911639555
YVPFRYVR	8	Unmodified	_YVPFRYVR_					0	0	0			REV__ENST00000605788.5_1_10:103911961-103912120:+|nuORF	REV__ENST00000605788.5_1_10:103911961-103912120:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	550.3060011764501	2	550.306001	1098.59745	1.9586	0.0010778	-9.9223	-0.0054603	-7.9636	-0.0043824	550.3005566295567	26.36	0.38601	26.349	26.228	26.614	-0.011135	1215	115	0.8891654	0.06996906	0.88764596	360.6125	0	28.376831						1350	17	5	NaN	NaN	NaN	0.76633	1	12469	12469		13.737	0.73422	1	307360	+		32791	12973	18966	19483	26155	26155					0.052094592967023345
YVPHQELF	8	Unmodified	_YVPHQELF_					0	0	0			REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1032.514907826	1	1032.51491	1031.50763	0.82447	0.00085128	-5.8973	-0.006089	-5.0728	-0.0052378	1032.5073732327319	31.308	0.072403	31.308	31.259	31.332	0	138	61	1.5369828	0.035414815	1.5369828	311.92657	0	7.187317						93	4	2	NaN	NaN	NaN	0.57691	1	9840	9840		26.732	2.8811	1	17425	+		32792	11897	18967	19484	26156	26156					-0.006862151025416097
YVPHQELF	8	Unmodified						0	0	0			REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1032.51491	1031.50763	0.82447	0.00085128	-5.8973	-0.006089	-5.0728	-0.0052378	1032.5073732327319	31.308	0.072403	31.308	31.259	31.332	0	138	61	1.5369828	0.035414815	1.5369828	311.92657		7.187317	0.015114	-0.00032672	0.00075972	NaN	26.732	93	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17425	+		32793	11897	18967	19484							-0.006862151025416097
YVPHQELF	8	Unmodified						0	0	0			REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	REV__ENST00000371224.6_1_10:97402857-97416365:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1032.51491	1031.50763	0.97649	0.0010082	-5.3117	-0.0054844	-4.3352	-0.0044762	1032.509679267926	31.283	0.024143	31.277	31.277	31.302	-0.0050716	138	67	1.5369828	0.038960457	1.5354633	311.92657		7.906891	-0.015114	0.00027791	-0.00075972	NaN	26.732	57	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11741	+		32794	11897	18967	19484							-0.006862151025416097
YVQDYEDFM	9	Oxidation (M)	_YVQDYEDFM(Oxidation (M))_		YVQDYEDFM(1)		YVQDYEDFM(43)	0	0	1		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;nc|ENSG00000104131|O75822-2|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2395292141999	2	613.239529	1224.46451	1.3287	0.00081481	2.8462	0.0017454	4.1748	0.0025602	613.2431382779123	21.826	0.19275	21.826	21.754	21.946	0	1200	94	0.89836043	0.05695367	0.89836043	363.87726	0	23.068848						473	9	5	NaN	NaN	NaN	0.059222	1	17076	17076		42.995	22.546	1	71083			32795	234	18968	19485	26157	26157		18			-0.1387481773278978
YVQFEEPEM	9	Unmodified	_YVQFEEPEM_					0	0	0		nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.2524396242	2	586.25244	1170.49033	1.6949	0.00099364	0.59788	0.00035051	2.2928	0.0013441	586.2532933195304	24.816	0.096523	24.816	24.791	24.888	0	1224	49	0.883646	0.029438376	0.883646	358.10117	0	11.929993						130	5	3	NaN	NaN	NaN	0.33629	1	15494	15494		16.584	5.4138	1	17799			32796	2761	18969	19486	26158	26158					-0.08809923490525762
YVQFEEPEM	9	Unmodified	_YVQFEEPEM_					0	0	0		nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.2524396242	2	586.25244	1170.49033	1.2811	0.00075107	3.1085	0.0018224	4.3897	0.0025735	586.2533849261083	24.815	0.12063	24.803	24.779	24.9	-0.012394	1224	55	0.883646	0.03311813	0.88212657	358.10117	0	13.421265						145	6	4	NaN	NaN	NaN	0.27608	1	14954	14954		20.449	4.986	1	15525			32797	2761	18969	19486	26159	26159					-0.08809923490525762
YVQFEEPEM	9	Oxidation (M)	_YVQFEEPEM(Oxidation (M))_		YVQFEEPEM(1)		YVQFEEPEM(67)	0	0	1		nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.2498969352499	2	594.249897	1186.48524	1.1301	0.00067159	1.0625	0.00063137	2.1926	0.001303	594.2508219699974	20.935	0.19261	20.935	20.838	21.031	0	1230	100	0.8799654	0.06068057	0.8799654	356.5536	0	24.587189						314	9	4	NaN	NaN	NaN	0.024221	1	16046	16046		66.656	42.094	1	44713			32798	2761	18969	19487	26160	26160		323			-0.10054227353134593
YVQQENFWI	9	Unmodified	_YVQQENFWI_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	409.5328676523	3	409.532868	1225.57677	2.4144	0.00098876	-3.7161	-0.0015219	-1.3017	-0.0005331	409.8661269835733	10.972	0.16775	10.972	10.9	11.068	0	1470	55	0.7320868	0.03341353	0.7320868	444.78467	0	20.300598						78	8	2	NaN	NaN	NaN	0.46215	1	17115	17115		7.1304	3.2297	1	5633.9			32799	360	18970	19488	26161	26161					-0.026991758736130578
YVRAQQKQI	9	Unmodified	_YVRAQQKQI_					0	0	0			REV__ENSG00000178971|ENST00000651323|CTC1	REV__ENSG00000178971|ENST00000651323|CTC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	378.5523736296	3	378.552374	1132.63529	1.6811	0.00063638	0.5984	0.00022653	2.2795	0.0008629	378.5526771779876	21.85	0.096334	21.85	21.802	21.898	0	1410	43	0.76917666	0.025934815	0.76917666	467.745	0	15.77124						103	5	3	NaN	NaN	NaN	0.53206	1	14201	14201		7.5876	3.2775	1	9049.6	+		32800	10798	18971	19489	26162	26162					0.07427925491515452
YVRELHEFKTS	11	Unmodified	_YVRELHEFKTS_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	704.8646084776	2	704.864608	1407.71466	0.52728	0.00037166	-6.9897	-0.0049268	-6.4624	-0.0045551	704.8589691218758	33.142	0.07238	33.142	33.118	33.19	0	1008	37	1.0156195	0.021910429	1.0156195	410.77515	0	8.861816						99	4	4	NaN	NaN	NaN	0.71564	1	20124	20124		6.4299	0	1	7567.9	+		32801	10517	18972	19490	26163	26163					0.02711527654969359
YVRELHEFKTS	11	Unmodified						0	0	0			REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	704.864608	1407.71466	0.52728	0.00037166	-6.9897	-0.0049268	-6.4624	-0.0045551	704.8589691218758	33.142	0.07238	33.142	33.118	33.19	0	1008	37	1.0156195	0.021910429	1.0156195	410.77515		8.861816	-0.058438	-0.0024896	-0.00015316	NaN	6.4299	99	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7567.9	+		32802	10517	18972	19490							0.02711527654969359
YVRHWFTPT	9	Unmodified	_YVRHWFTPT_					0	0	0			REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	402.8733357003333	3	402.873336	1205.59818	1.4825	0.00059726	1.0483	0.00042231	2.5308	0.0010196	402.8736356427659	19.587	0.36101	19.573	19.428	19.789	-0.014141	1482	58	0.72465914	0.035290897	0.7231397	440.35306	0	21.44516						411	16	3	NaN	NaN	NaN	0.39244	1	15963	15963		16.858	6.6545	1	89318	+		32803	12257	18973	19491	26164	26164					0.003602539457460807
YVRHWFTPT	9	Unmodified						0	0	0			REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	402.873336	1205.59818	1.4825	0.00059726	1.0483	0.00042231	2.5308	0.0010196	402.8736356427659	19.587	0.36101	19.573	19.428	19.789	-0.014141	1482	58	0.72465914	0.035290897	0.7231397	440.35306		21.44516	0.13625	7.5994E-05	-0.00075972	NaN	16.858	411	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89318	+		32804	12257	18973	19491							0.003602539457460807
YVRRLVDF	8	Unmodified	_YVRRLVDF_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.3034584875	2	534.303458	1066.59236	2.032	0.0010857	-10.012	-0.0053495	-7.9802	-0.0042639	534.2987929195541	25.226	0.0965	25.226	25.153	25.25	0	1248	61	0.8689189	0.036845744	0.8689189	352.53223	0	14.9487915						74	5	2	NaN	NaN	NaN	0.78264	1	11422	11422		11.548	3.2582	1	8329.7	+		32805	11412	18974	19492	26165	26165					0.061731554340894945
YVSDGNFSNYY	11	Unmodified	_YVSDGNFSNYY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	664.7751247683001	2	664.775125	1327.5357	1.5655	0.0010407	3.8157	0.0025366	5.3812	0.0035773	664.7781292342357	20.598	0.1205	20.584	20.535	20.656	-0.014088	1119	46	0.9479278	0.027495861	0.94640833	383.62186	0	11.127441						230	6	5	NaN	NaN	NaN	0.40559	1	18353	18353		21.85	3.8807	1	42558			32806	5310	18975	19493	26166	26166					-0.11496981703749043
YVSILSNIL	9	Unmodified	_YVSILSNIL_					0	0	0		OR8H3|p.T224N|1|0.08|ENSG00000181761|chr11:56123043-56123043|C/A|missense_variant	OR8H3|p.T224N|1|0.08|ENSG00000181761|chr11:56123043-56123043|C/A|missense_variant	OR8H3|p.T224N|1|0.08|ENSG00000181761|chr11:56123043-56123043|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1021.5928237960001	1	1021.59282	1020.58555	2.0718	0.0021165	-2.8519	-0.0029135	-0.78011	-0.00079695	1021.5905184065809	32.273	0.096561	32.273	32.273	32.37	0	129	46	1.5422925	0.026542783	1.5422925	313.04834	0	5.3875732						98	5	2	NaN	NaN	NaN	0.29681	1	9407	9407		19.118	0	1	9495.2			32807	8086	18976	19494	26167	26167					0.07607797762852897
YVSLSMGCMMF	11	Unmodified	_YVSLSMGCMMF_					0	0	0		TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant	TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant	TMEM244|p.V37M|1|0.11|ENSG00000203756|chr6:129845777-129845777|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.51092442566664	3	423.510924	1267.51094	0.5396	0.00022853	-2.6486	-0.0011217	-2.109	-0.00089317	423.84356239633377	33.913	0.16888	33.911	33.863	34.032	-0.0012474	1449	55	0.74507743	0.033391774	0.743558	452.51065	0	20.279938						287	8	5	NaN	NaN	NaN	0.69801	1	17356	17356		3.3044	0.33436	1	33092			32808	13718	18977	19495	26168	26168					-0.11211115698370122
YVSRPSHF	8	Unmodified	_YVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	496.75105877625003	2	496.751059	991.487565	1.5287	0.00075937	0.28663	0.00014239	1.8153	0.00090175	496.75091284768354	15.101	0.14419	15.101	15.077	15.222	0	1455	46	0.7413668	0.027833998	0.7413668	301.07285	0	11.303528						136	7	3	NaN	NaN	NaN	0.29743	1	8259	8259		42.318	17.357	1	12794			32809	4737	18978	19496	26169	26169					-0.00851966042478125
YVSRPSHF	8	Unmodified	_YVSRPSHF_					0	0	0		ENSG00000170581|ENST00000314128|STAT2;nc|ENSG00000170581|P52630-4|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENSG00000170581|ENST00000314128|STAT2	ENSG00000170581|ENST00000314128|STAT2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	496.75105877625003	2	496.751059	991.487565	1.0171	0.00050527	-0.61457	-0.00030529	0.40257	0.00019998	496.7509042055501	15.172	0.12008	15.16	15.112	15.232	-0.012202	1455	49	0.7413668	0.02969122	0.73984736	301.07285	0	12.05777						149	6	3	NaN	NaN	NaN	0.36826	1	8093	8093		38.131	19.013	1	14111			32810	4737	18978	19496	26170	26170					-0.00851966042478125
YVSSPDPQL	9	Unmodified	_YVSSPDPQL_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1005.488752655	1	1005.48875	1004.48148	1.4476	0.0014555	-0.96381	-0.0009691	0.48377	0.00048643	1005.487232576966	20.622	0.096323	20.622	20.597	20.694	0	252	64	1.4695803	0.037333846	1.4695803	298.35327	0	7.579468						104	5	2	NaN	NaN	NaN	0.013093	1	8757	8757		83.529	47.294	1	10245			32811	3668	18979	19497	26171	26171					-0.020585290646749854
YVSSPDPQL	9	Unmodified	_YVSSPDPQL_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1005.488752655	1	1005.48875	1004.48148	1.3949	0.0014026	1.1758	0.0011822	2.5707	0.0025848	1005.4898749272066	20.646	0.12053	20.632	20.559	20.68	-0.014086	255	70	1.4678029	0.040893793	1.4662834	297.9924	0	8.302216						135	6	2	NaN	NaN	NaN	0.097143	1	8584	8584		36.235	12.9	1	11492			32812	3668	18979	19497	26172	26172					-0.020585290646749854
YVSSTIPNM	9	Unmodified	_YVSSTIPNM_					0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1011.4815587871002	1	1011.48156	1010.47428	1.66	0.0016791	-0.6882	-0.0006961	0.9718	0.00098296	1011.4797425028978	28.798	0.096504	28.798	28.75	28.846	0	192	70	1.5050892	0.04080701	1.5050892	305.53772	0	8.283936						118	5	3	NaN	NaN	NaN	0.49672	1	8994	8994		9.746	0	1	8005.8			32813	5017	18980	19498	26173	26173					-0.03053584936731113
YVSSTIPNM	9	Unmodified						0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1011.48156	1010.47428	1.6232	0.0016419	-0.17783	-0.00017987	1.4454	0.001462	1011.481332321206	28.797	0.072395	28.789	28.765	28.837	-0.0083504	189	61	1.5068626	0.035474896	1.5053432	305.89774		7.2015076	-0.0045524	0.00030102	0.00012701	NaN	9.746	82	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6930.9			32814	5017	18980	19498							-0.03053584936731113
YVTECQGGYYS	11	Unmodified	_YVTECQGGYYS_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	423.8412610112667	3	423.841261	1268.50195	0.70522	0.0002989	5.9437	0.0025192	6.6489	0.0028181	423.8441262295328	33.914	0.14476	33.914	33.866	34.01	0	1449	70	0.74507743	0.04268813	0.74507743	452.5068	0	25.92569						208	7	4	NaN	NaN	NaN	0.73455	1	18190	18190		2.0359	0	1	32406	+		32815	10140	18981	19499	26174	26174					-0.12155726467153727
YVVDDAAVL	9	Unmodified	_YVVDDAAVL_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	964.4985890597999	1	964.498589	963.491313	2.3158	0.0022336	-0.58276	-0.00056207	1.733	0.0016715	964.4981036665581	25.636	0.26545	25.636	25.588	25.853	0	282	100	1.4517976	0.058729887	1.4517976	294.91275	0	11.930145						512	12	4	NaN	NaN	NaN	0.078597	1	7437	7437		38.918	12.186	1	155410			32816	5821	18982	19500	26175	26175					0.008106589407020692
YVVDDAAVL	9	Unmodified	_YVVDDAAVL_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	964.4985890597999	1	964.498589	963.491313	2.211	0.0021325	-0.3447	-0.00033246	1.8663	0.0018001	964.4980254689121	25.636	0.28951	25.624	25.576	25.865	-0.0116	279	124	1.4535767	0.07297504	1.4520572	295.27414	0	14.823883						541	13	4	NaN	NaN	NaN	0.049695	1	7287	7287		47.04	10.454	1	161580			32817	5821	18982	19500	26176	26176					0.008106589407020692
YVVDLSNERAM	11	Unmodified	_YVVDLSNERAM_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.87993861486666	3	432.879939	1295.61799	1.7174	0.00074344	-10.257	-0.0044402	-8.54	-0.0036968	432.87597579775564	16.107	0.16783	16.094	16.047	16.214	-0.012611	1443	40	0.7487872	0.024109721	0.7472678	454.6576	0	14.639252						163	8	3	NaN	NaN	NaN	0.69656	1	17860	17860		3.6122	0	1	16553			32818	4260	18983	19501	26177	26177					-0.017997828964553264
YVVEKVLDR	9	Unmodified	_YVVEKVLDR_					0	0	0		ENSG00000108468|ENST00000225603|CBX1;ENSG00000094916|ENST00000209875|CBX5	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.8216810304	2	560.821681	1119.62881	1.9273	0.0010809	-0.87008	-0.00048796	1.0572	0.00059289	560.8215801483418	17.45	0.072041	17.436	17.412	17.484	-0.013569	1197	40	0.9001988	0.023899257	0.8986794	365.00223	0	9.690399						68	4	2	NaN	NaN	NaN	0.3947	1	13268	13268		13.949	4.2028	1	7097			32819	1113	18984	19502	26178	26178					0.07377987540121467
YVVEKVLDR	9	Unmodified						0	0	0		ENSG00000108468|ENST00000225603|CBX1;ENSG00000094916|ENST00000209875|CBX5	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.821681	1119.62881	1.9193	0.0010764	-0.57343	-0.00032159	1.3458	0.00075478	560.8210790317555	17.357	0.071985	17.357	17.357	17.429	0	1197	40	0.9001988	0.023899257	0.9001988	365.00223		9.690399	-0.039527	0.00018617	0.00075972	NaN	13.949	57	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5891.9			32820	1113	18984	19502							0.07377987540121467
YVVGNQSTFL	10	Unmodified	_YVVGNQSTFL_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.2902137265	2	564.290214	1126.56587	1.8584	0.0010487	-8.7988	-0.0049651	-6.9404	-0.0039164	564.2861188923995	23.851	0.072218	23.851	23.803	23.875	0	1275	85	0.85233563	0.051567256	0.85233563	345.56937	0	20.907349						101	4	2	NaN	NaN	NaN	0.4422	1	13962	13962		21.85	0.079341	1	12698			32821	1762	18985	19503	26179	26179					0.007654217520894235
YVVHVSENN	9	Unmodified	_YVVHVSENN_					0	0	0		ENSG00000254221|ENST00000523390|PCDHGB1;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000254221|ENST00000523390|PCDHGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	530.7565380846501	2	530.756538	1059.49852	0.43655	0.0002317	-1.6467	-0.00087398	-1.2101	-0.00064227	531.2601757214902	31.572	0.096563	31.568	31.544	31.64	-0.0044155	1287	49	0.8449601	0.029495716	0.84344065	342.84103	0	11.967834						76	5	2	NaN	NaN	NaN	0.51576	1	10816	10816		8.962	0.042884	1	7153.4			32822	6118	18986	19504	26180	26180					-0.028846084588622034
YVVKETAFTVS	11	Unmodified	_YVVKETAFTVS_					0	0	0		sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	415.22381118299995	3	415.223811	1242.6496	1.6995	0.00070565	4.4652	0.001854	6.1646	0.0025597	415.22534800066813	19.564	0.072012	19.564	19.54	19.612	0	1458	46	0.7395112	0.027837038	0.7395112	449.22675	0	16.910004						75	4	3	NaN	NaN	NaN	0.77278	1	17601	17601		0.43218	0	1	5481.6			32823	13692	18987	19505	26181	26181					0.037985331291110924
YVVNEGRPNAN	11	Unmodified	_YVVNEGRPNAN_					0	0	0			REV__ENSG00000143297|ENST00000361835|FCRL5	REV__ENSG00000143297|ENST00000361835|FCRL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	616.8045509097502	2	616.804551	1231.59455	1.4339	0.00088441	-7.2871	-0.0044947	-5.8533	-0.0036103	616.7991168743132	25.491	0.19304	25.479	25.431	25.624	-0.012011	1143	100	0.9332562	0.06060195	0.93173677	377.9873	0	24.545013						332	9	2	NaN	NaN	NaN	0.21983	1	16585	16585		28.495	6.6603	1	51166	+		32824	9862	18988	19506	26182	26182					-0.011984606187297686
YVVNEGRPNAN	11	Unmodified						0	0	0			REV__ENSG00000143297|ENST00000361835|FCRL5	REV__ENSG00000143297|ENST00000361835|FCRL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	616.804551	1231.59455	1.3305	0.00082063	-3.4991	-0.0021583	-2.1687	-0.0013377	616.8014027743669	25.346	0.12062	25.346	25.274	25.395	0	1137	91	0.9369253	0.05505997	0.9369253	379.47336		22.300415	-0.066244	0.0029155	0.0025943	NaN	28.495	170	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17937	+		32825	9862	18988	19506							-0.011984606187297686
YVVNEGRPNAN	11	Unmodified						0	0	0			REV__ENSG00000143297|ENST00000361835|FCRL5	REV__ENSG00000143297|ENST00000361835|FCRL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	616.804551	1231.59455	1.4339	0.00088441	-7.2871	-0.0044947	-5.8533	-0.0036103	616.7991168743132	25.491	0.19304	25.479	25.431	25.624	-0.012011	1143	100	0.9332562	0.06060195	0.93173677	377.9873		24.545013	0.066244	-0.0017574	-0.0025943	NaN	28.495	332	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51166	+		32826	9862	18988	19506							-0.011984606187297686
YVVSEVYEF	9	Unmodified	_YVVSEVYEF_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.7713224816	2	567.771322	1133.52809	1.062	0.00060296	-9.1787	-0.0052114	-8.1167	-0.0046085	567.7658927673992	33.02	0.26527	33.018	32.969	33.235	-0.0024796	1233	67	0.87812483	0.040495276	0.8766054	355.99887	0	16.417084						671	12	6	NaN	NaN	NaN	0.12945	1	13765	13765		31.561	13.762	1	153350	+		32827	9694	18989	19507	26183	26183					-0.03333089233387909
YVVTLGELL	9	Unmodified	_YVVTLGELL_					0	0	0			REV__ENST00000551412.5_1_12:54718935-54741629:+|nuORF	REV__ENST00000551412.5_1_12:54718935-54741629:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1006.5819247587002	1	1006.58192	1005.57465	1.3887	0.0013979	0.38448	0.00038702	1.7732	0.0017849	1006.5818362645799	34.203	0.16882	34.203	34.131	34.3	0	165	91	1.5210435	0.05316174	1.5210435	308.79675	0	10.792694						236	8	2	NaN	NaN	NaN	0.11467	1	8821	8821		33.698	2.1373	1	35702	+		32828	9096	18990	19508	26184	26184					0.07208395388579447
YVVVDPQHE	9	Unmodified	_YVVVDPQHE_					0	0	0			REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	543.2667386302	2	543.266739	1084.51892	1.2403	0.00067379	-1.1954	-0.00064944	0.044826	2.4353E-05	543.7672815076043	34.998	0.12065	34.998	34.95	35.07	-4.5776E-05	1248	55	0.8689189	0.033150375	0.86739945	352.4579	0	13.446716						166	6	4	NaN	NaN	NaN	0.47587	1	11844	11844		10.605	0	1	11055	+		32829	13007	18991	19509	26185	26185					-0.019954377990416106
YVVVDPQHE	9	Unmodified						0	0	0			REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	543.266739	1084.51892	0.79858	0.00043384	-1.2072	-0.00065583	-0.40862	-0.00022199	543.7671842435016	34.999	0.096485	34.999	34.975	35.072	0	1248	52	0.8689189	0.031306982	0.8689189	352.4579		12.699005	0.00074486	-7.9415E-06	0.00075972	NaN	10.605	174	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14184	+		32830	13007	18991	19509							-0.019954377990416106
YVVVDPQHE	9	Unmodified						0	0	0			REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	REV__HDAC11|p.L250Q|1|0.41|ENSG00000163517|chr3:13504193-13504193|T/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	543.266739	1084.51892	1.2403	0.00067379	-1.1954	-0.00064944	0.044826	2.4353E-05	543.7672815076043	34.998	0.12065	34.998	34.95	35.07	-4.5776E-05	1248	55	0.8689189	0.033150375	0.86739945	352.4579		13.446716	-0.00074486	4.8314E-06	-0.00075972	NaN	10.605	166	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11055	+		32831	13007	18991	19509							-0.019954377990416106
YVWPFTNFPID	11	Unmodified	_YVWPFTNFPID_					0	0	0		nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	699.8400707488	2	699.840071	1397.66559	0.84592	0.00059201	-10.174	-0.0071198	-9.3276	-0.0065278	699.8328741620022	27.012	0.16893	27.012	26.94	27.109	0	1056	37	0.9863805	0.021950483	0.9863805	398.9771	0	8.878662						93	8	2	NaN	NaN	NaN	0.73455	1	20048	20048		5.1889	1.6191	1	6553			32832	7988	18992	19510	26186	26186					-0.017337606339651757
YVWYLLVW	8	Unmodified	_YVWYLLVW_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|259|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|259|2|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.30767819815	2	571.307678	1140.6008	1.1163	0.00063777	6.4591	0.0036901	7.5754	0.0043279	571.8117361451531	31.718	0.048271	31.718	31.718	31.766	0	1218	46	0.8873258	0.02758801	0.8873258	359.70212	0	11.183563						50	3	2	NaN	NaN	NaN	0.81214	1	14478	14478		7.5902	0.049862	1	4780	+		32833	13039	18993	19511	26187	26187					0.0361270935070479
YVYMLTDS	8	Unmodified	_YVYMLTDS_					0	0	0			REV__IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	REV__IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	991.4441106482999	1	991.444111	990.436834	2.3952	0.0023747	-6.4221	-0.0063671	-4.0269	-0.0039924	991.436578363433	23.778	0.072308	23.778	23.73	23.803	0	303	43	1.4393384	0.024935484	1.4393384	292.26968	0	5.063385						47	4	2	NaN	NaN	NaN	0.84692	1	8224	8224		1.4396	0	1	2475.3	+		32834	9246	18994	19512	26188	26188					-0.058766762023765295
YVYMLTDS	8	Unmodified						0	0	0			REV__IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	REV__IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	991.444111	990.436834	2.3952	0.0023747	-6.4221	-0.0063671	-4.0269	-0.0039924	991.436578363433	23.778	0.072308	23.778	23.73	23.803	0	303	43	1.4393384	0.024935484	1.4393384	292.26968		5.063385	0	0	0	NaN	1.4396	47	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2475.3	+		32835	9246	18994	19512							-0.058766762023765295
YVYQRASRF	9	Unmodified	_YVYQRASRF_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.3092721469	2	595.309272	1188.60399	0.82136	0.00048896	4.4055	0.0026227	5.2269	0.0031116	595.3133113060729	27.494	0.16894	27.484	27.436	27.605	-0.009552	1167	58	0.91857195	0.034888268	0.9170525	372.18896	0	14.136108						175	8	2	NaN	NaN	NaN	0.27608	1	15511	15511		20.449	7.4458	1	78362	+		32836	10911	18995	19513	26189	26189					0.017233524574066905
YVYRLQVSSI	10	Unmodified	_YVYRLQVSSI_					0	0	0		PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB;nc|ENSG00000113721|P09619-2|PDGFRB	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.3402379243	2	614.340238	1226.66592	1.5177	0.00093239	-8.7371	-0.0053676	-7.2194	-0.0044352	614.3343723486006	19.37	0.048021	19.356	19.332	19.38	-0.014141	1161	52	0.9222442	0.031209052	0.92072475	373.54388	0	12.640869						55	3	2	NaN	NaN	NaN	0.72631	1	16466	16466		6.2502	0.55606	1	4270			32837	1929	18996	19514	26190	26190					0.06165659085900188
YVYSGVETL	9	Unmodified	_YVYSGVETL_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1030.5091537461	1	1030.50915	1029.50188	1.4754	0.0015204	-2.2562	-0.002325	-0.78079	-0.00080462	1030.5087215883145	24.237	0.16891	24.237	24.213	24.381	0	240	73	1.4766881	0.042628646	1.4766881	299.69763	0	8.651611						268	8	3	NaN	NaN	NaN	0.014046	1	9749	9749		80.639	38.854	1	36360			32838	1728	18997	19515	26191	26191					-0.011693584048316552
YVYSGVETL	9	Unmodified	_YVYSGVETL_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1030.5091537461	1	1030.50915	1029.50188	1.3518	0.0013931	-2.2001	-0.0022672	-0.84824	-0.00087412	1030.5088034988573	24.26	0.16898	24.248	24.199	24.368	-0.012749	237	73	1.4784646	0.042624116	1.4769452	300.05817	0	8.650696						254	8	3	NaN	NaN	NaN	0.0072287	1	9552	9552		98.041	59.002	1	31553			32839	1728	18997	19515	26192	26192					-0.011693584048316552
YVYVSNFSW	9	Unmodified	_YVYVSNFSW_					0	0	0		ENST00000424738.1_1_10:117226695-117357303:+|nuORF;ENSG00000107518|ENST00000355044|ATRNL1	ENST00000424738.1_1_10:117226695-117357303:+|nuORF	ENST00000424738.1_1_10:117226695-117357303:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	582.7716568326001	2	582.771657	1163.52876	1.2496	0.0007282	-3.4245	-0.0019957	-2.1749	-0.0012675	582.7694062412086	29.424	0.12066	29.417	29.368	29.489	-0.0077209	1221	76	0.885486	0.045970082	0.88396657	358.87186	0	18.63086						208	6	4	NaN	NaN	NaN	0.16171	1	14734	14734		27.789	0	1	31254			32840	6936	18998	19516	26193	26193					-0.04646249793654533
YWELCTNEK	9	Unmodified	_YWELCTNEK_					0	0	0		tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1	tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1	tr|U7T765|U7T765_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00131PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	593.26588135045	2	593.265881	1184.51721	2.0471	0.0012145	2.3766	0.00141	4.4237	0.0026245	593.2674800582555	16.515	0.071863	16.502	16.478	16.55	-0.012993	1191	37	0.90387505	0.022057295	0.9023556	366.24854	0	8.937592						54	4	2	NaN	NaN	NaN	0.63698	1	15381	15381		3.9685	0.39529	1	3696.1			32841	14007	18999	19517	26194	26194					-0.06766814879324556
YWENKIVRI	9	Unmodified	_YWENKIVRI_					0	0	0		ENSG00000089234|ENST00000419234|BRAP;nc|ENSG00000089234|Q7Z569-2|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	407.5643906813667	3	407.564391	1219.67134	1.2639	0.0005151	-1.4176	-0.00057778	-0.15379	-6.2681E-05	407.5630637898753	20.838	0.048187	20.838	20.814	20.862	0	1407	28	0.77102906	0.016671479	0.77102906	468.46954	0	10.129395						35	3	2	NaN	NaN	NaN	0.67989	1	16980	16980		0.38509	0.12685	1	2804.1			32842	1035	19000	19518	26195	26195					0.07029382668383732
YWFENTRNGLF	11	Unmodified	_YWFENTRNGLF_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.84367607025	2	723.843676	1445.6728	1.5354	0.0011114	-2.1321	-0.0015433	-0.59675	-0.00043195	723.8424048784897	28.146	0.12066	28.146	28.074	28.194	0	1035	61	0.99917877	0.03656441	0.99917877	404.0223	0	14.785004						157	6	3	NaN	NaN	NaN	0.3345	1	20366	20366		24.393	11.824	1	12284			32843	3257	19001	19519	26196	26196					-0.03221028033544826
YWFTVEFG	8	Unmodified	_YWFTVEFG_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000171759|ENST00000553106|PAH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	524.7423680769001	2	524.742368	1047.47018	1.0765	0.00056486	5.0186	0.0026335	6.095	0.0031983	524.7443855614121	33.094	0.024117	33.094	33.069	33.094	0	1296	34	0.8394264	0.02029252	0.8394264	340.6459	0	8.234894						35	2	2	NaN	NaN	NaN	0.8439	1	10513	10513		3.1533	0.36816	1	2235.6			32844	4804	19002	19520	26197	26197					-0.05165306368144229
YWFYTTASS	9	Unmodified	_YWFYTTASS_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	563.2480145607999	2	563.248015	1124.48148	1.8234	0.001027	3.3253	0.001873	5.1487	0.0029	563.2495757631086	19.372	0.19195	19.372	19.3	19.492	0	1257	55	0.86339295	0.033150375	0.86339295	350.0602	0	13.440735						134	9	2	NaN	NaN	NaN	0.55027	1	13860	13860		7.5404	0.55601	1	11943	+		32845	11132	19003	19521	26198	26198					-0.07578529064699069
YWGEWNSYY	9	Unmodified	_YWGEWNSYY_					0	0	0		nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1	nc|ENSG00000271271|P0DTE5-2|UGT2A2	nc|ENSG00000271271|P0DTE5-2|UGT2A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	423.1733394283	3	423.173339	1266.49819	1.0062	0.0004258	2.011	0.000851	3.0172	0.0012768	423.1732710369591	32.344	0.072392	32.341	32.341	32.413	-0.0037613	1452	34	0.74322224	0.02040714	0.7417028	451.3878	0	12.3940735						62	4	2	NaN	NaN	NaN	0.64666	1	17332	17332		3.5794	0.36781	1	4648.1			32846	6173	19004	19522	26199	26199					-0.12440028178707507
YWGEWNSYY	9	Unmodified						0	0	0		nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1	nc|ENSG00000271271|P0DTE5-2|UGT2A2	nc|ENSG00000271271|P0DTE5-2|UGT2A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		3	423.173339	1266.49819	1.2248	0.00051832	-0.28108	-0.00011895	0.94375	0.00039937	423.17393310764675	32.37	0.072411	32.37	32.321	32.394	0	1455	31	0.7413668	0.018555045	0.7413668	450.26096		11.269196	0.014504	-0.0013214	-0.00016798	NaN	3.5794	51	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3778.4			32847	6173	19004	19522							-0.12440028178707507
YWGLLDSED	9	Unmodified	_YWGLLDSED_					0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1097.4785818992	1	1097.47858	1096.47131	1.0046	0.0011025	-5.3318	-0.0058515	-4.3272	-0.0047491	1098.4726728027154	31.38	0.096537	31.38	31.332	31.428	0	96	106	1.5617468	0.061900496	1.5617468	316.7045	0	12.552734						270	5	3	NaN	NaN	NaN	0.29681	1	12670	12670		19.118	0	1	25366		+	32848	220	19005	19523	26200	26200					-0.07307136789881952
YWGLLDSED	9	Unmodified						0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1097.47858	1096.47131	1.2742	0.0013984	-6.3895	-0.0070123	-5.1153	-0.0056139	1098.4719648960042	31.379	0.12062	31.374	31.326	31.446	-0.0050716	93	109	1.5635144	0.06366575	1.5619949	317.06293		12.910706	-0.0030618	-0.00053441	0.00012401	NaN	19.118	307	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27793		+	32849	220	19005	19523							-0.07307136789881952
YWGSAPMKML	10	Unmodified	_YWGSAPMKML_					0	0	0			REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	592.2855625475501	2	592.285563	1182.55657	1.1349	0.00067217	4.3929	0.0026019	5.5278	0.003274	592.2891037142948	19.274	0.19225	19.26	19.212	19.404	-0.014143	1176	94	0.9130621	0.056959867	0.91154265	369.97818	0	23.080475						257	9	3	NaN	NaN	NaN	0.60686	1	15316	15316		14.425	2.3763	1	26152	+		32850	10084	19006	19524	26201	26201					-0.027403861294487797
YWGSAPMKML	10	Unmodified						0	0	0			REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	592.285563	1182.55657	1.4158	0.00083858	2.104	0.0012462	3.5198	0.0020847	592.2852204168286	19.252	0.12006	19.252	19.204	19.324	0	1200	67	0.89836043	0.040438354	0.89836043	364.02097		16.385864	-0.003937	-0.0016913	-0.0065911	NaN	14.425	193	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15911	+		32851	10084	19006	19524							-0.027403861294487797
YWGSAPMKML	10	Unmodified						0	0	0			REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	REV__ENST00000284384.6_1_17:64637544-64770230:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	592.285563	1182.55657	1.1349	0.00067217	4.3929	0.0026019	5.5278	0.003274	592.2891037142948	19.274	0.19225	19.26	19.212	19.404	-0.014143	1176	94	0.9130621	0.056959867	0.91154265	369.97818		23.080475	0.003937	0.0010202	0.0065911	NaN	14.425	257	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26152	+		32852	10084	19006	19524							-0.027403861294487797
YWKIYNSIYI	10	Unmodified	_YWKIYNSIYI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	681.8582635019501	2	681.858264	1361.70197	2.0264	0.0013817	-3.3465	-0.0022819	-1.3202	-0.00090017	681.8560445028546	28.46	0.33786	28.46	28.388	28.725	0	1068	79	0.97906286	0.047564566	0.97906286	396.11966	0	19.244171						728	15	4	NaN	NaN	NaN	0.047882	1	19702	19702		53.14	24.645	1	191860			32853	2028	19007	19525	26202	26202					0.0355911626274974
YWKIYNSIYI	10	Unmodified	_YWKIYNSIYI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	681.8582635019501	2	681.858264	1361.70197	1.4809	0.0010098	-2.8398	-0.0019363	-1.3589	-0.00092655	681.856287258288	28.507	0.31369	28.499	28.403	28.716	-0.0083485	1068	73	0.97906286	0.043905735	0.9775434	396.11966	0	17.763855						713	14	5	NaN	NaN	NaN	0.080496	1	18793	18793		48.65	28.137	1	176130			32854	2028	19007	19525	26203	26203					0.0355911626274974
YWKIYNSIYI	10	Unmodified						0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	681.858264	1361.70197	1.5375	0.0010484	-4.6154	-0.0031471	-3.0779	-0.0020987	682.3568248505768	28.773	0.096504	28.765	28.74	28.837	-0.0083504	1065	49	0.9808926	0.02927363	0.97937316	396.85995		11.843842	0.15232	-0.0015905	0.00015513	NaN	53.14	98	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5262.9			32855	2028	19007	19525							0.0355911626274974
YWLFVYECL	9	Unmodified	_YWLFVYECL_					0	0	0		tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	tr|U7SKT8|U7SKT8_FUSNUReversetranscriptasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01930PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.2939105084001	2	618.293911	1234.57327	0.27484	0.00016993	8.8427	0.0054674	9.1176	0.0056373	618.2995268074623	38.227	0.12012	38.227	38.203	38.324	0	1161	79	0.9222442	0.047708333	0.9222442	373.51718	0	19.322327						184	6	2	NaN	NaN	NaN	0.51184	1	17386	17386		9.1232	0.16122	1	15022			32856	13759	19008	19526	26204	26204					-0.034635619718301314
YWLHAFPELYF	11	Unmodified	_YWLHAFPELYF_					0	0	0		ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	ENSG00000067167|ENST00000262213|TRAM1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	743.3637130206001	2	743.363713	1484.71287	2.1065	0.0015659	-2.6722	-0.0019864	-0.56572	-0.00042054	743.864263483012	33.961	0.048252	33.96	33.936	33.984	-0.0012474	963	31	1.0429853	0.018231153	1.0414659	421.63055	0	7.3700256						36	3	2	NaN	NaN	NaN	0.688	1	19525	19525		8.2448	3.5157	1	2463.9			32857	713	19009	19527	26205	26205					-0.010094813629393684
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2765834225	2	613.276583	1224.53861	0.72594	0.0004452	-7.0953	-0.0043514	-6.3694	-0.0039062	613.7737333477106	24.526	0.16879	24.526	24.43	24.598	0	1176	76	0.9130621	0.04592544	0.9130621	369.8319	0	18.601929						100	3	3	NaN	NaN	NaN	0.3389	1	17081	17081		16.417	0	1	19513			32858	1974	19010	19528	26206	26206					-0.06467385059931985
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.2765834225	2	613.276583	1224.53861	1.7605	0.0010797	-0.37137	-0.00022775	1.3891	0.0008519	613.2761974333091	23.393	0.43396	23.393	23.248	23.682	0	1170	91	0.91673553	0.055089712	0.91673553	371.3198	0	22.313843						863	19	5	NaN	NaN	NaN	2.6074E-07	1	17088	17088		131.88	92.838	1	370130			32859	1974	19010	19528	26207	26207					-0.06467385059931985
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2765834225	2	613.276583	1224.53861	0.84254	0.00051671	-5.0699	-0.0031093	-4.2274	-0.0025925	613.2743729811158	24.526	0.072378	24.514	24.489	24.562	-0.012392	1176	49	0.9130621	0.029390633	0.91154265	369.8319	0	11.904572						112	4	3	NaN	NaN	NaN	0.23112	1	16398	16398		23.334	7.5125	1	11665			32860	1974	19010	19528	26208	26208					-0.06467385059931985
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.2765834225	2	613.276583	1224.53861	1.8527	0.0011362	0.38898	0.00023855	2.2417	0.0013748	613.2766693597297	23.416	0.48228	23.403	23.283	23.765	-0.013294	1170	109	0.91673553	0.06611484	0.9152161	371.3198	0	26.779541						826	21	4	NaN	NaN	NaN	0.0094682	1	16404	16404		93.472	70.137	1	356320			32861	1974	19010	19528	26209	26209					-0.06467385059931985
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(120)HVQNTF	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.27404073355	2	621.274041	1240.53353	2.0788	0.0012915	-2.6052	-0.0016185	-0.52643	-0.00032706	621.2734161240089	19.9	0.38455	19.9	19.78	20.165	0	1170	103	0.91673553	0.062468708	0.91673553	371.26645	0	25.299072						1037	17	6	NaN	NaN	NaN	0.00017726	1	17536	17536		118.2	87.006	1	474130			32862	1974	19010	19529	26210	26210		222			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(81)HVQNTF	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.27404073355	2	621.274041	1240.53353	1.5538	0.00096532	-2.2335	-0.0013876	-0.67975	-0.00042231	621.2734675306261	19.924	0.33693	19.909	19.837	20.174	-0.014141	1176	97	0.9130621	0.05879408	0.91154265	369.77875	0	23.810883						949	15	6	NaN	NaN	NaN	0.014046	1	16794	16794		80.639	50.603	1	417680			32863	1974	19010	19529	26211	26211		222			-0.07711688922563553
YWMIMIVL	8	Unmodified	_YWMIMIVL_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.78466709055	2	534.784667	1067.55478	0.8726	0.00046665	8.7704	0.0046902	9.6429	0.0051569	534.7897596274596	33.044	0.12047	33.042	33.018	33.138	-0.0024757	1281	58	0.84864825	0.035031855	0.8471288	344.3041	0	14.2127075						88	6	2	NaN	NaN	NaN	0.83849	1	11186	11186		4.0537	0.90034	1	6447.3	+		32864	9077	19011	19530	26212	26212					0.02370604852580982
YWMTGYPQQL	10	Unmodified	_YWMTGYPQQL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	643.7973486543501	2	643.797349	1285.58014	1.6715	0.0010761	-3.5134	-0.0022619	-1.842	-0.0011858	643.7960092223755	27.808	0.12071	27.798	27.75	27.87	-0.009552	1137	73	0.9369253	0.044033706	0.93540585	379.29666	0	17.826233						188	6	3	NaN	NaN	NaN	0.088985	1	17697	17697		47.482	25.647	1	20706			32865	5114	19012	19531	26213	26213					-0.05122249091255071
YWSTVKDKF	9	Unmodified	_YWSTVKDKF_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	391.8694797872332	3	391.86948	1172.58661	1.7094	0.00066987	-2.6078	-0.0010219	-0.89839	-0.00035205	391.8679485504707	17.765	0.11987	17.765	17.741	17.861	0	1392	31	0.780288	0.018512845	0.780288	474.30777	0	11.253235						89	6	2	NaN	NaN	NaN	0.31471	1	15572	15572		12.307	7.9965	1	11261			32866	1758	19013	19532	26214	26214					0.007220121317232042
YWSTVKDKF	9	Unmodified	_YWSTVKDKF_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.3005814475499	2	587.300581	1172.58661	2.1014	0.0012342	0.23042	0.00013533	2.3318	0.0013695	587.3010961528638	17.765	0.16783	17.765	17.741	17.909	0	1188	37	0.90571284	0.022050142	0.90571284	367.03622	0	8.93573						136	8	3	NaN	NaN	NaN	0.061945	1	15573	15573		41.839	22.72	1	13157			32867	1758	19013	19532	26215	26215					0.007220121317232042
YWSTVKDKF	9	Unmodified	_YWSTVKDKF_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.3005814475499	2	587.300581	1172.58661	1.7932	0.0010531	-0.41099	-0.00024137	1.3822	0.00081177	587.3004124658697	17.858	0.19189	17.844	17.772	17.964	-0.013786	1185	37	0.90755045	0.022050142	0.906031	367.78088	0	8.93573						169	9	3	NaN	NaN	NaN	0.064504	1	15018	15018		40.957	20.401	1	15967			32868	1758	19013	19532	26216	26216					0.007220121317232042
YWSTVKDKF	9	Unmodified	_YWSTVKDKF_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	391.8694797872332	3	391.86948	1172.58661	1.9318	0.00075703	0.40546	0.00015889	2.3373	0.00091591	391.86951935132385	17.858	0.11995	17.844	17.82	17.94	-0.013786	1392	43	0.780288	0.02592069	0.77876854	474.30777	0	15.756226						81	6	2	NaN	NaN	NaN	0.48181	1	15019	15019		6.6174	2.6893	1	9793.9			32869	1758	19013	19532	26217	26217					0.007220121317232042
YWTGLPFYGTV	11	Unmodified	_YWTGLPFYGTV_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.3215138549	2	652.321514	1302.62847	1.1282	0.00073598	4.0713	0.0026558	5.1996	0.0033918	652.3232470099141	32.611	0.12069	32.611	32.587	32.707	0	1134	61	0.9387595	0.036694765	0.9387595	379.98633	0	14.853119						136	6	3	NaN	NaN	NaN	0.7072	1	18823	18823		6.9844	3.0159	1	11620	+		32870	10618	19014	19533	26218	26218					-0.010734321797372104
YWTGLPFYGTV	11	Unmodified						0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	652.321514	1302.62847	1.1282	0.00073598	4.0713	0.0026558	5.1996	0.0033918	652.3232470099141	32.611	0.12069	32.611	32.587	32.707	0	1134	61	0.9387595	0.036694765	0.9387595	379.98633		14.853119	0	0	0	NaN	6.9844	136	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11620	+		32871	10618	19014	19533							-0.010734321797372104
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	572.28767103755	2	572.287671	1142.56079	1.9132	0.0010949	-2.1048	-0.0012045	-0.19161	-0.00010966	572.2853093997602	19.492	0.216	19.492	19.444	19.66	0	1194	91	0.902037	0.05518502	0.902037	365.6583	0	22.3703						297	10	3	NaN	NaN	NaN	0.059222	1	14546	14546		42.995	16.88	1	69865			32872	1882	19015	19534	26219	26219					-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.28767103755	2	572.287671	1142.56079	1.3213	0.00075619	-4.1261	-0.0023613	-2.8048	-0.0016051	572.2846334759424	19.515	0.26476	19.5	19.404	19.669	-0.014141	1194	88	0.902037	0.053348422	0.9005176	365.6583	0	21.625793						424	12	3	NaN	NaN	NaN	0.030696	1	14064	14064		58.2	25.747	1	79990			32873	1882	19015	19534	26220	26220					-0.004788821105421448
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1154.5404538745	1	1154.54045	1153.53318	2.3406	0.0027023	-8.6543	-0.0099917	-6.3137	-0.0072894	1154.527733906778	32.321	0.16895	32.321	32.273	32.442	0	63	67	1.5811787	0.038849115	1.5811787	320.44778	0	7.873352						161	8	2	NaN	NaN	NaN	0.39244	1	14911	14911		14.042	2.8713	1	12481			32874	2283	19016	19535	26221	26221					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1154.5404538745	1	1154.54045	1153.53318	2.043	0.0023588	-0.60956	-0.00070376	1.4335	0.001655	1154.5402097582546	30.97	0.09656	30.97	30.97	31.066	0	579	118	1.2747238	0.07018137	1.2747238	258.34042	0	14.223221						185	5	3	NaN	NaN	NaN	0.043119	1	14914	14914		49.833	24.872	1	17056			32875	2283	19016	19535	26222	26222					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1154.5404538745	1	1154.54045	1153.53318	2.3446	0.002707	-0.27867	-0.00032173	2.066	0.0023852	1154.5395881092038	30.97	0.16897	30.97	30.946	31.115	0	57	169	1.5847093	0.09903574	1.5847093	321.16327	0	20.070953						620	8	3	NaN	NaN	NaN	0.012648	1	14915	14915		84.879	52.426	1	164520			32876	2283	19016	19535	26223	26223					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1154.5404538745	1	1154.54045	1153.53318	2.2631	0.0026129	-0.88479	-0.0010215	1.3783	0.0015914	1154.5392637524599	30.969	0.28961	30.964	30.915	31.205	-0.0050716	57	178	1.5847093	0.10435784	1.5831898	321.16327	0	21.149536						802	13	4	NaN	NaN	NaN	0.023074	1	14418	14418		68.108	33.67	1	184030			32877	2283	19016	19535	26224	26224					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1154.5404538745	1	1154.54045	1153.53318	1.9726	0.0022774	-0.51255	-0.00059176	1.46	0.0016857	1154.5391436422801	30.969	0.096546	30.964	30.94	31.036	-0.0050716	576	118	1.2765218	0.07016647	1.2750024	258.7048	0	14.2202						183	5	3	NaN	NaN	NaN	0.018156	1	14419	14419		74.332	52.561	1	14918			32878	2283	19016	19535	26225	26225					-0.037447853707590184
YYASAFSMM	9	Unmodified	_YYASAFSMM_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.4321657535	1	1070.43217	1069.42489	1.9725	0.0021115	-0.33905	-0.00036293	1.6335	0.0017485	1070.4311072196617	28.219	0.16889	28.219	28.17	28.339	0	105	52	1.5564433	0.030056357	1.5564433	315.7282	0	6.0970154						202	8	3	NaN	NaN	NaN	0.02781	1	11516	11516		61.977	38.126	1	20013			32879	6089	19017	19536	26226	26226					-0.10704616217185503
YYASAFSMM	9	Unmodified	_YYASAFSMM_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.4321657535	1	1070.43217	1069.42489	0.94725	0.001014	1.4823	0.0015867	2.4295	0.0026006	1070.433706631494	28.218	0.16895	28.209	28.161	28.33	-0.0089779	99	55	1.5599792	0.03182268	1.5584598	316.44547	0	6.4553223						214	8	3	NaN	NaN	NaN	0.094712	1	11232	11232		36.586	17.302	1	21209			32880	6089	19017	19536	26227	26227					-0.10704616217185503
YYASAFSMM	9	Oxidation (M)	_YYASAFSM(Oxidation (M))M_		YYASAFSM(0.989)M(0.011)		YYASAFSM(20)M(-20)	0	0	1		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1086.4270803755999	1	1086.42708	1085.4198	1.4045	0.0015259	1.5611	0.001696	2.9656	0.0032219	1086.4283583562226	24.357	0.09651	24.357	24.333	24.43	0	105	52	1.5564433	0.030059576	1.5564433	315.66895	0	6.0964966						117	5	3	NaN	NaN	NaN	0.00010594	1	12187	12187		122.55	100.71	2	8296.8			32881	6089	19017	19537	26228	26228		617;618			-0.11948920079817071
YYASAFSMM	9	Oxidation (M)	_YYASAFSM(Oxidation (M))M_		YYASAFSM(0.5)M(0.5)		YYASAFSM(0)M(0)	0	0	1		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1086.4270803755999	1	1086.42708	1085.4198	1.3737	0.0014924	0.88484	0.00096132	2.2585	0.0024537	1086.4301079817355	24.357	0.09656	24.344	24.32	24.417	-0.012747	105	46	1.5564433	0.026520252	1.5549239	315.66895	0	5.378723						123	5	3	NaN	NaN	NaN	0.012648	1	11877	11877		84.879	64.323	2	9231.6			32882	6089	19017	19537	26229	26229		617;618			-0.11948920079817071
YYASDVWSF	9	Unmodified	_YYASDVWSF_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1137.4887526549999	1	1137.48875	1136.48148	2.5519	0.0029028	0.48478	0.00055144	3.0367	0.0034542	1137.4894770693431	30.246	0.16891	30.246	30.222	30.391	0	105	67	1.5564433	0.038898587	1.5564433	315.49078	0	7.8847046						348	8	4	NaN	NaN	NaN	0.030391	1	14321	14321		58.599	27.808	1	58134			32883	1534	19018	19538	26230	26230					-0.08130529064669645
YYASDVWSF	9	Unmodified	_YYASDVWSF_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1137.4887526549999	1	1137.48875	1136.48148	1.1946	0.0013588	1.2449	0.001416	2.4394	0.0027748	1137.4903998886236	30.245	0.21714	30.238	30.19	30.407	-0.0064106	105	73	1.5564433	0.04243934	1.5549239	315.49078	0	8.602417						373	10	4	NaN	NaN	NaN	0.014046	1	13851	13851		80.639	54.524	1	61421			32884	1534	19018	19538	26231	26231					-0.08130529064669645
YYASFLEVL	9	Unmodified	_YYASFLEVL_					0	0	0		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;ENST00000558053.1_1_15:44846774-44849853:+|nuORF;ENST00000451571.1_1_9:79607732-79607996:+|nuORF	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1104.5611893166001	1	1104.56119	1103.55391	1.6715	0.0018462	6.8409	0.0075562	8.5124	0.0094025	1105.5737352390654	34.758	0.26526	34.758	34.686	34.951	0	66	97	1.579413	0.056531787	1.579413	320.26138	0	11.463104						549	12	5	NaN	NaN	NaN	0.17818	1	12994	12994		26.732	8.9326	1	95836			32885	234	19019	19539	26232	26232					0.006278050089122189
YYASFLEVL	9	Unmodified	_YYASFLEVL_					0	0	0		nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion;ENST00000558053.1_1_15:44846774-44849853:+|nuORF;ENST00000451571.1_1_9:79607732-79607996:+|nuORF	nc|ENSG00000104131|O75822-3|EIF3J	nc|ENSG00000104131|O75822-3|EIF3J	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1104.5611893166001	1	1104.56119	1103.55391	1.5181	0.0016768	4.8747	0.0053844	6.3928	0.0070612	1104.5606474829424	34.757	0.26512	34.756	34.684	34.949	-0.0006485	66	94	1.579413	0.054756522	1.5778936	320.2614	0	11.103119						485	12	4	NaN	NaN	NaN	0.24994	1	12646	12646		22.126	2.9628	1	95282			32886	234	19019	19539	26233	26233					0.006278050089122189
YYDANQSMYVF	11	Unmodified	_YYDANQSMYVF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42;ENST00000478089.1_1_1:16621266-16641853:-|nuORF	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	700.79500293065	2	700.795003	1399.57545	1.3706	0.00096049	-1.948	-0.0013652	-0.57746	-0.00040468	700.792655244224	28.146	0.21721	28.146	28.05	28.267	0	1074	64	0.9754029	0.038436174	0.9754029	394.53152	0	15.546692						216	10	3	NaN	NaN	NaN	0.036982	1	20062	20062		53.14	41.97	1	33718			32887	515	19020	19540	26234	26234					-0.10835178024717607
YYDANQSMYVF	11	Unmodified	_YYDANQSMYVF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42;ENST00000478089.1_1_1:16621266-16641853:-|nuORF	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	700.79500293065	2	700.795003	1399.57545	0.70552	0.00049443	-1.0543	-0.00073881	-0.34873	-0.00024439	700.7948147723004	28.145	0.14483	28.137	28.112	28.257	-0.0089798	1071	55	0.977233	0.032943487	0.97571355	395.27176	0	13.325012						251	7	4	NaN	NaN	NaN	0.065807	1	19117	19117		45.827	35.466	1	32286			32888	515	19020	19540	26235	26235					-0.10835178024717607
YYDANQSMYVF	11	Oxidation (M)	_YYDANQSM(Oxidation (M))YVF_		YYDANQSM(1)YVF		YYDANQSM(44)YVF	0	0	1		ENSG00000037637|ENST00000375592|FBXO42;ENST00000478089.1_1_1:16621266-16641853:-|nuORF	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	708.7924602416999	2	708.79246	1415.57037	1.4363	0.001018	-0.84865	-0.00060152	0.58764	0.00041651	708.7912928500858	25.178	0.1689	25.178	25.129	25.298	0	1074	52	0.9754029	0.031114936	0.9754029	394.4879	0	12.584015						346	8	4	NaN	NaN	NaN	0.073891	1	20188	20188		43.776	24.439	1	47860			32889	515	19020	19541	26236	26236		46			-0.12079481887326438
YYDANQSMYVF	11	Oxidation (M)	_YYDANQSM(Oxidation (M))YVF_		YYDANQSM(1)YVF		YYDANQSM(43)YVF	0	0	1		ENSG00000037637|ENST00000375592|FBXO42;ENST00000478089.1_1_1:16621266-16641853:-|nuORF	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	708.7924602416999	2	708.79246	1415.57037	1.3865	0.00098278	-1.0766	-0.00076312	0.3099	0.00021966	708.7913294967901	25.177	0.19299	25.165	25.117	25.31	-0.012011	1074	52	0.9754029	0.031114936	0.97388345	394.4879	0	12.584015						324	9	4	NaN	NaN	NaN	0.076968	1	19229	19229		42.995	26.136	1	43574			32890	515	19020	19541	26237	26237		46			-0.12079481887326438
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	482.5627154152333	3	482.562715	1444.66632	1.8559	0.00089557	-4.1793	-0.0020168	-2.3234	-0.0011212	482.5610198802504	22.043	0.096512	22.043	22.043	22.139	0	1323	46	0.8228144	0.027704597	0.8228144	499.06293	0	16.80371						109	5	3	NaN	NaN	NaN	0.77513	1	20347	20347		1.5256	0.64096	1	7848.6			32891	1919	19021	19542	26238	26238					-0.03822965984909388
YYDDQTRQNI	10	Unmodified	_YYDDQTRQNI_					0	0	0		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	658.29929835635	2	658.299298	1314.58404	1.738	0.0011441	-3.7876	-0.0024933	-2.0495	-0.0013492	658.7985016922383	15.268	0.11993	15.256	15.232	15.352	-0.012202	1134	34	0.9387595	0.020174503	0.93724006	379.95007	0	8.165344						88	6	3	NaN	NaN	NaN	0.15566	1	18184	18184		39.34	30.378	1	5327.7			32892	2038	19022	19543	26239	26239					-0.06066488063856923
YYDDQTRQNI	10	Unmodified						0	0	0		nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	nc|ENSG00000115762|Q96CS7-5|PLEKHB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	658.299298	1314.58404	1.4237	0.00093721	-2.0648	-0.0013593	-0.64111	-0.00042204	658.2976627575373	15.27	0.072061	15.27	15.27	15.342	0	1134	34	0.9387595	0.020176709	0.9387595	379.95007		8.166229	0.0068292	0.0010981	0.00075972	NaN	39.34	59	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4455.3			32893	2038	19022	19543							-0.06066488063856923
YYDDYRVQL	9	Unmodified	_YYDDYRVQL_					0	0	0		ENST00000580285.1_1_17:62529306-62530930:+|nuORF;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	617.79057786725	2	617.790578	1233.5666	0.75012	0.00046342	-0.30967	-0.00019131	0.44045	0.00027211	617.7898194257085	22.428	0.12039	22.414	22.39	22.511	-0.013731	1149	49	0.92958635	0.029365301	0.9280669	376.49423	0	11.893311						156	6	3	NaN	NaN	NaN	0.41766	1	16634	16634		13.003	0	1	17950			32894	6136	19023	19544	26240	26240					-0.0408378359886683
YYDDYRVQL	9	Unmodified						0	0	0		ENST00000580285.1_1_17:62529306-62530930:+|nuORF;ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	617.790578	1233.5666	1.2311	0.00076056	-1.8085	-0.0011173	-0.57741	-0.00035672	617.788364357614	22.405	0.21684	22.405	22.308	22.525	0	1149	52	0.92958635	0.031202316	0.92958635	376.49423		12.637329	-0.0048326	-0.0010553	0.00075972	NaN	13.003	178	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18047			32895	6136	19023	19544							-0.0408378359886683
YYDEFFKEK	9	Unmodified	_YYDEFFKEK_					0	0	0			REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.7953288941501	2	634.795329	1267.5761	1.3623	0.00086479	-0.2269	-0.00014403	1.1354	0.00072076	634.7947955088331	24.237	0.12069	24.237	24.188	24.309	0	1113	64	0.9515937	0.038502514	0.9515937	385.29303	0	15.589355						107	6	2	NaN	NaN	NaN	0.56671	1	18175	18175		6.8632	0.613	1	11292	+		32896	8147	19024	19545	26241	26241					-0.046980153133290514
YYDGDKRIH	9	Unmodified	_YYDGDKRIH_					0	0	0			REV__nc|ENSG00000173157|P59510|ADAMTS20	REV__nc|ENSG00000173157|P59510|ADAMTS20	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	583.78308718615	2	583.783087	1165.55162	1.6435	0.00095945	6.8409	0.0039936	8.4844	0.0049531	584.2884618944231	24.285	0.14475	24.285	24.237	24.381	0	1158	70	0.92408	0.04222405	0.92408	374.50568	0	17.112305						322	7	5	NaN	NaN	NaN	0.31737	1	15320	15320		17.799	4.0619	1	41624	+		32897	10667	19025	19546	26242	26242					-0.024532306762012013
YYDGKVMKL	9	Unmodified	_YYDGKVMKL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	558.7915349949501	2	558.791535	1115.56852	1.7989	0.0010052	-2.1083	-0.0011781	-0.30944	-0.00017291	558.7905571623311	17.453	0.16779	17.453	17.429	17.597	0	1224	43	0.883646	0.025761366	0.883646	358.30646	0	10.445862						161	8	3	NaN	NaN	NaN	0.21306	1	13503	13503		32.778	16.361	1	19404			32898	5834	19026	19547	26243	26243					0.015355538854009865
YYDGKVMKL	9	Unmodified	_YYDGKVMKL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	558.7915349949501	2	558.791535	1115.56852	1.6988	0.00094928	0.34996	0.00019556	2.0488	0.0011448	558.7917711836545	17.546	0.19193	17.532	17.46	17.652	-0.013567	1221	49	0.885486	0.029438376	0.88396657	359.05252	0	11.936829						169	9	3	NaN	NaN	NaN	0.094469	1	13114	13114		28.495	15.032	1	20279			32899	5834	19026	19547	26244	26244					0.015355538854009865
YYDGKVMKL	9	Oxidation (M)	_YYDGKVM(Oxidation (M))KL_		YYDGKVM(1)KL		YYDGKVM(53)KL	0	0	1		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7889923060001	2	566.788992	1131.56343	1.6787	0.00095148	-2.5725	-0.0014581	-0.89379	-0.00050659	566.787562806057	14.405	0.16789	14.405	14.357	14.525	0	1215	46	0.8891654	0.02759397	0.8891654	360.4823	0	11.187042						190	8	3	NaN	NaN	NaN	0.03618	1	14147	14147		52.78	24.991	1	20507			32900	5834	19026	19548	26245	26245		598			0.002912500227921555
YYDGKVMKL	9	Oxidation (M)	_YYDGKVM(Oxidation (M))KL_		YYDGKVM(1)KL		YYDGKVM(48)KL	0	0	1		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	566.7889923060001	2	566.788992	1131.56343	1.1189	0.00063417	-1.0128	-0.00057403	0.10611	6.014E-05	566.7881388861286	14.452	0.16772	14.441	14.369	14.537	-0.011218	1215	49	0.8891654	0.029425621	0.88764596	360.48227	0	11.929626						162	8	3	NaN	NaN	NaN	0.04743	1	13700	13700		48.002	21.271	1	16463			32901	5834	19026	19548	26246	26246		598			0.002912500227921555
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	625.2798460054499	2	625.279846	1248.54514	1.7078	0.0010679	-8.4891	-0.0053081	-6.7813	-0.0042402	625.2745959665035	18.674	0.36008	18.66	18.54	18.9	-0.014059	1155	97	0.92591566	0.05876869	0.9243962	374.95782	0	23.79892						1014	16	6	NaN	NaN	NaN	0.33202	1	16987	16987		16.858	1.6829	1	156410			32902	1965	19027	19549	26247	26247					-0.06919168627587169
YYDLQEVLL	9	Unmodified	_YYDLQEVLL_					0	0	0		SETX-EIF3B|1|fusion;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX-EIF3B|1|fusion	SETX-EIF3B|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.3002470965502	2	578.300247	1154.58594	1.4213	0.00082197	-1.4774	-0.00085436	-0.056024	-3.2399E-05	578.2992780941674	32.539	0.096508	32.539	32.514	32.611	0	1143	58	0.9332562	0.034873188	0.9332562	378.2666	0	14.134796						116	5	3	NaN	NaN	NaN	0.61413	1	14970	14970		4.9097	2.0203	1	8611.7			32903	1630	19028	19550	26248	26248					0.01483172692064727
YYDLVRTEI	9	Unmodified	_YYDLVRTEI_					0	0	0		ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2	ENSG00000100485|ENST00000216373|SOS2	ENSG00000100485|ENST00000216373|SOS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.3033211017502	2	586.303321	1170.59209	1.8197	0.0010669	-0.68296	-0.00040042	1.1368	0.00066649	586.3027553146845	23.416	0.09654	23.403	23.379	23.476	-0.013294	1149	73	0.92958635	0.044076502	0.9280669	376.7183	0	17.862183						110	5	2	NaN	NaN	NaN	0.46713	1	14967	14967		10.965	3.3775	1	16137			32904	1252	19029	19551	26249	26249					0.01361690923590686
YYDNADKL	8	Unmodified	_YYDNADKL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	501.2323644965999	2	501.232364	1000.45018	2.1025	0.0010538	0.02996	1.5017E-05	2.1325	0.0010689	501.2319899210717	15.939	0.11974	15.927	15.903	16.023	-0.012611	1317	43	0.8265074	0.025853395	0.82498795	335.60773	0	10.497925						111	6	3	NaN	NaN	NaN	0.75347	1	8426	8426		15.463	2.4598	1	7939.2			32905	4444	19030	19552	26250	26250					-0.050031020987717056
YYDNADKL	8	Unmodified						0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	501.232364	1000.45018	1.7231	0.00086367	-1.0907	-0.00054667	0.63244	0.000317	501.23216600765585	15.942	0.19185	15.942	15.894	16.086	0	1314	52	0.8283535	0.031395137	0.8283535	336.35736		12.748169	0.0075788	-0.00059028	0.0016828	NaN	15.463	106	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7256			32906	4444	19030	19552							-0.050031020987717056
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.251088566	2	571.251089	1140.48762	1.8185	0.0010388	2.3523	0.0013437	4.1708	0.0023826	571.7549007087761	18.314	0.14411	18.3	18.276	18.42	-0.01395	1227	58	0.88180584	0.034971297	0.8802864	357.4649	0	14.176605						148	7	3	NaN	NaN	NaN	0.29341	1	13990	13990		19.336	7.2877	1	14696			32907	1272	19031	19553	26251	26251					-0.07700010833150372
YYDPHQATF	9	Unmodified						0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	571.251089	1140.48762	2.2532	0.0012871	-0.29238	-0.00016702	1.9608	0.0011201	571.7536587533582	18.292	0.16796	18.292	18.268	18.436	0	1230	46	0.8799654	0.027605891	0.8799654	356.71884		11.190826	-0.0035637	-0.0013127	-0.00016048	NaN	19.336	135	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13586			32908	1272	19031	19553							-0.07700010833150372
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	394.53784157986667	3	394.537842	1180.5917	1.0353	0.00040846	-0.50792	-0.00020039	0.52736	0.00020806	394.5380316834687	20.838	0.096451	20.838	20.814	20.911	0	1464	37	0.73579943	0.022273242	0.73579943	447.2296	0	13.538025						90	5	3	NaN	NaN	NaN	0.49672	1	15848	15848		12.57	10.331	1	9542.3			32909	4096	19032	19554	26252	26252					0.008623159943681458
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	394.53784157986667	3	394.537842	1180.5917	0.96928	0.00038242	-2.0273	-0.00079983	-1.058	-0.00041741	394.87132965174607	20.887	0.096373	20.873	20.849	20.945	-0.014088	1464	31	0.73579943	0.018561065	0.73428	447.22964	0	11.281677						79	5	2	NaN	NaN	NaN	0.38313	1	15262	15262		21.85	14.72	1	9820.6			32910	4096	19032	19554	26253	26253					0.008623159943681458
YYDSEDDAQA	10	Unmodified	_YYDSEDDAQA_					0	0	0			REV__nc|ENSG00000211638|A0A075B6I0|IGLV8-61	REV__nc|ENSG00000211638|A0A075B6I0|IGLV8-61	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.7200151926	2	588.720015	1175.42548	0.85927	0.00050587	3.3305	0.0019607	4.1898	0.0024666	588.7222230902601	32.827	0.14477	32.824	32.776	32.92	-0.0031052	1197	40	0.9001988	0.023899257	0.8986794	364.7914	0	9.684814						180	7	5	NaN	NaN	NaN	0.68669	1	15083	15083		8.962	0.67169	1	18951	+		32911	13223	19033	19555	26254	26254					-0.15521826762801538
YYDVAKILI	9	Unmodified	_YYDVAKILI_					0	0	0		ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	549.3157001955001	2	549.3157	1096.61685	1.4694	0.00080719	-1.6378	-0.00089966	-0.16835	-9.2477E-05	549.314266503359	28.001	0.072355	28.001	27.977	28.05	0	1221	46	0.885486	0.02759695	0.885486	359.12827	0	11.192566						92	4	3	NaN	NaN	NaN	0.46215	1	12710	12710		11.17	0.079644	1	16057			32912	31	19034	19556	26255	26255					0.07240370796944262
YYDVAKQLL	9	Unmodified	_YYDVAKQLL_					0	0	0		ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.8029569610001	2	556.802957	1111.59136	1.392	0.00077505	-1.4596	-0.0008127	-0.06763	-3.7656E-05	556.8027025735578	24.092	0.07242	24.079	24.055	24.127	-0.012749	1206	58	0.894683	0.034948587	0.89316356	362.79764	0	14.171783						137	4	3	NaN	NaN	NaN	0.084037	1	12971	12971		38.131	20.332	1	20759			32913	30	19035	19557	26256	26256					0.040028962745282115
YYDVAKQLL	9	Unmodified						0	0	0		ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF;ANKRD11|p.T278Hfs*71|1|0.25|ENSG00000167522|chr16:89286099-89286100|-/G|frameshift_variant;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	ENST00000378332.6_1_16:89353515-89371640:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.802957	1111.59136	1.2324	0.0006862	-3.7638	-0.0020957	-2.5314	-0.0014095	556.8005828849817	24.068	0.14478	24.068	24.044	24.188	0	1209	61	0.892844	0.036790013	0.892844	362.05194		14.918488	-0.0055878	-0.0018147	-0.00015978	NaN	38.131	172	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22627			32914	30	19035	19557							0.040028962745282115
YYDVPIATL	9	Unmodified	_YYDVPIATL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1054.5455392524	1	1054.54554	1053.53826	1.958	0.0020648	0.11366	0.00011986	2.0716	0.0021846	1054.5475952719448	29.594	0.072407	29.594	29.57	29.642	0	102	85	1.5582114	0.04952824	1.5582114	316.14758	0	10.048859						153	4	3	NaN	NaN	NaN	0.074859	1	10798	10798		39.459	27.91	1	13600			32915	655	19036	19558	26257	26257					0.01363518491848481
YYDVPIATL	9	Unmodified	_YYDVPIATL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1054.5455392524	1	1054.54554	1053.53826	1.3389	0.001412	-0.31182	-0.00032883	1.0271	0.0010831	1054.5459647596624	29.593	0.096546	29.586	29.562	29.659	-0.0070667	102	79	1.5582114	0.045990467	1.556692	316.14758	0	9.331055						171	5	3	NaN	NaN	NaN	0.026295	1	10575	10575		63.958	48.783	1	14320			32916	655	19036	19558	26258	26258					0.01363518491848481
YYDYNFINF	9	Unmodified	_YYDYNFINF_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	629.7743964868	2	629.774396	1257.53424	1.1873	0.00074775	-1.4197	-0.00089406	-0.23233	-0.00014631	629.7727020473434	32.056	0.14478	32.056	32.032	32.177	0	1110	91	0.95342636	0.055018425	0.95342636	386.0683	0	22.278442						245	7	3	NaN	NaN	NaN	0.41766	1	17939	17939		13.003	2.0377	1	24848			32917	3015	19037	19559	26259	26259					-0.08422571001869983
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	604.26693559545	2	604.266936	1206.51932	2.2246	0.0013443	-1.7387	-0.0010506	0.48591	0.00029362	604.265890446093	17.405	0.38355	17.405	17.261	17.645	0	1203	175	0.8965218	0.106507	0.8965218	363.19275	0	43.1474						1673	17	6	NaN	NaN	NaN	0.0080618	1	16636	16636		96.341	56.882	1	722800			32918	378	19038	19560	26260	26260					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-3|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32	nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-3|IL32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	604.26693559545	2	604.266936	1206.51932	2.0762	0.0012546	-1.2019	-0.00072629	0.87429	0.0005283	604.266314271881	17.426	0.40783	17.412	17.268	17.676	-0.013567	1203	172	0.8965218	0.104676306	0.89500237	363.19275	0	42.40576						1710	18	5	NaN	NaN	NaN	0.006197	1	15970	15970		100.15	67.693	1	789540			32919	378	19038	19560	26261	26261					-0.07568062869859205
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.7796788299501	2	614.779679	1227.5448	1.3225	0.00081307	-0.95248	-0.00058557	0.37006	0.0002275	614.7789664872956	23.61	0.14459	23.61	23.586	23.73	0	1143	79	0.9332562	0.04772383	0.9332562	378.0011	0	19.329803						295	7	4	NaN	NaN	NaN	0.10956	1	17175	17175		34.439	17.855	1	75087			32920	4474	19039	19561	26262	26262					-0.05986588347423094
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	614.7796788299501	2	614.779679	1227.5448	1.3287	0.00081685	-1.9924	-0.0012249	-0.66368	-0.00040801	615.2797880978682	23.634	0.19276	23.621	23.572	23.765	-0.013048	1143	73	0.9332562	0.04404801	0.93173677	378.0011	0	17.840973						258	9	5	NaN	NaN	NaN	0.094712	1	16476	16476		36.586	16.031	1	63946			32921	4474	19039	19561	26263	26263					-0.05986588347423094
YYEHRAPDM	9	Unmodified	_YYEHRAPDM_					0	0	0		RSPO2|p.G84E|1|0.05|ENSG00000147655|chr8:107989088-107989088|C/T|missense_variant	RSPO2|p.G84E|1|0.05|ENSG00000147655|chr8:107989088-107989088|C/T|missense_variant	RSPO2|p.G84E|1|0.05|ENSG00000147655|chr8:107989088-107989088|C/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.2558479804001	2	591.255848	1180.49714	0.99099	0.00058593	-9.0036	-0.0053235	-8.0127	-0.0047375	591.2518418505276	35.651	0.048149	35.651	35.627	35.675	0	1194	37	0.902037	0.022057295	0.902037	365.51816	0	8.937958						57	3	2	NaN	NaN	NaN	0.44082	1	15832	15832		12.049	1.6885	1	4023.2			32922	13668	19040	19562	26264	26264					-0.08588565819263749
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	404.8768572624333	3	404.876857	1211.60874	1.6987	0.00068775	-1.9243	-0.00077909	-0.22561	-9.1345E-05	404.8756174572874	13.853	0.12001	13.853	13.853	13.973	0	1422	28	0.7617651	0.01667869	0.7617651	462.87527	0	10.134552						81	6	2	NaN	NaN	NaN	0.41766	1	16763	16763		11.739	9.0347	1	8867.7			32923	2032	19041	19563	26265	26265					0.011402366001675546
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	421.8730013493333	3	421.873001	1262.59717	1.9794	0.00083504	-2.1344	-0.00090044	-0.15504	-6.5407E-05	421.8720150155799	19.66	0.21617	19.66	19.636	19.852	0	1428	73	0.7580582	0.044474125	0.7580582	460.41357	0	27.01175						547	10	5	NaN	NaN	NaN	0.02857	1	18048	18048		53.652	37.83	1	190300			32924	2764	19042	19564	26266	26266					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.3058637907001	2	632.305864	1262.59717	2.1314	0.0013477	-1.4433	-0.00091259	0.68809	0.00043508	632.3049171815888	19.66	0.26421	19.66	19.636	19.9	0	1092	70	0.9644182	0.042137563	0.9644182	390.50217	0	17.06189						468	12	5	NaN	NaN	NaN	0.0050453	1	18049	18049		102.5	54.494	1	178070			32925	2764	19042	19564	26267	26267					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.3058637907001	2	632.305864	1262.59717	1.7809	0.0011261	-1.9507	-0.0012335	-0.16982	-0.00010738	632.3047866365114	19.755	0.33696	19.741	19.693	20.03	-0.014141	1095	64	0.9625867	0.038469315	0.96106726	389.7606	0	15.576599						571	15	5	NaN	NaN	NaN	8.9076E-05	1	17264	17264		123.58	82.62	1	175610			32926	2764	19042	19564	26268	26268					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;ITGB4-SAP30BP|2|fusion;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4-SAP30BP|1|fusion	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	421.8730013493333	3	421.873001	1262.59717	1.4922	0.00062953	-0.96976	-0.00040912	0.52247	0.00022042	421.8724850876542	19.755	0.24051	19.741	19.669	19.909	-0.014141	1428	73	0.7580582	0.044474125	0.75653875	460.41357	0	27.01175						512	11	5	NaN	NaN	NaN	0.03618	1	17265	17265		61.199	50.955	1	182650			32927	2764	19042	19564	26269	26269					-0.023620052138085157
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	608.7978715831001	2	608.797872	1215.58119	1.5595	0.00094944	-1.5232	-0.00092731	0.03636	2.2136E-05	608.7967364600906	21.994	0.14456	21.994	21.946	22.091	0	1161	112	0.9222442	0.06792569	0.9222442	373.58176	0	27.515259						383	7	3	NaN	NaN	NaN	0.002766	1	16870	16870		108.71	75.013	1	108730			32928	5631;3301	19043	19565	26270	26270					-0.017977114506948055
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	608.7978715831001	2	608.797872	1215.58119	0.98712	0.00060096	-1.3918	-0.00084732	-0.40467	-0.00024636	608.7969003474437	22.018	0.24092	22.004	21.932	22.173	-0.013895	1161	109	0.9222442	0.066093385	0.92072475	373.58176	0	26.77304						587	11	4	NaN	NaN	NaN	2.553E-07	1	16202	16202		132.08	88.303	1	122320			32929	5631;3301	19043	19565	26271	26271					-0.017977114506948055
YYELAQVLL	9	Unmodified	_YYELAQVLL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	556.3053324744501	2	556.305332	1110.59611	0.95684	0.0005323	-4.654	-0.002589	-3.6971	-0.0020567	556.3022348448693	33.14	0.12058	33.138	33.09	33.21	-0.0024757	1200	40	0.89836043	0.023899257	0.896841	364.29285	0	9.691345						125	6	3	NaN	NaN	NaN	0.33629	1	12936	12936		16.584	4.5355	1	10370			32930	2713;2763	19044	19566	26272	26272					0.0452378041729844
YYELAQVLL	9	Unmodified						0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-6|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	556.305332	1110.59611	0.69256	0.00038528	-3.2483	-0.001807	-2.5557	-0.0014217	556.3033334344365	33.142	0.1689	33.142	33.069	33.238	0	1200	40	0.89836043	0.023899257	0.89836043	364.29285		9.691345	0.0018964	0.00070264	0.00075972	NaN	16.584	113	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11652			32931	2713;2763	19044	19566							0.0452378041729844
YYELYRRQ	8	Unmodified	_YYELYRRQ_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	397.53661211506665	3	397.536612	1189.58801	2.8791	0.0011446	-11.285	-0.0044861	-8.4057	-0.0033416	397.5312141135132	18.41	0.096075	18.396	18.348	18.444	-0.013948	1410	28	0.76917666	0.016669631	0.7676573	467.4761	0	10.131165						42	5	2	NaN	NaN	NaN	0.84756	1	15529	15529		0.59723	0.31014	1	2577.9			32932	535	19045	19567	26273	26273					0.0007964622050167236
YYENSYAL	8	Unmodified	_YYENSYAL_					0	0	0		nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;ENSG00000146648|ENST00000275493|EGFR;EGFR|p.A289Rfs*9|1|0.03|ENSG00000146648|chr7:55154126-55154138|GTGCCACCTGCGT/-|frameshift_variant	nc|ENSG00000146648|P00533-2|EGFR	nc|ENSG00000146648|P00533-2|EGFR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	511.72691497795	2	511.726915	1021.43928	2.1052	0.0010773	-4.3047	-0.0022028	-2.1995	-0.0011255	511.7247669462341	25.419	0.072414	25.419	25.371	25.443	0	1356	94	0.8024889	0.05725622	0.8024889	325.76407	0	23.242706						94	4	2	NaN	NaN	NaN	0.78967	1	9419	9419		10.605	1.643	1	10036			32933	3569	19046	19568	26274	26274					-0.07058504473036464
YYESLRLFL	9	Unmodified	_YYESLRLFL_					0	0	0		ENST00000567728.1_1_16:50770259-50770406:-|nuORF	ENST00000567728.1_1_16:50770259-50770406:-|nuORF	ENST00000567728.1_1_16:50770259-50770406:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.32405654385	2	602.324057	1202.63356	1.35	0.00081317	-5.0776	-0.0030584	-3.7276	-0.0022452	602.321407101163	21.537	0.096489	21.523	21.499	21.595	-0.014004	1203	31	0.8965218	0.01838702	0.89500237	363.20605	0	7.4490967						69	5	2	NaN	NaN	NaN	0.53206	1	15910	15910		8.2903	1.8604	1	7391.1			32934	7635	19047	19569	26275	26275					0.040348716828930264
YYESLRLFL	9	Unmodified						0	0	0		ENST00000567728.1_1_16:50770259-50770406:-|nuORF	ENST00000567728.1_1_16:50770259-50770406:-|nuORF	ENST00000567728.1_1_16:50770259-50770406:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	602.324057	1202.63356	1.3348	0.00080397	-3.4171	-0.0020582	-2.0823	-0.0012542	602.3220637782402	21.537	0.096344	21.537	21.513	21.609	0	1203	31	0.8965218	0.018385053	0.8965218	363.20602		7.448303	0.0070034	0.0011993	0.00075972	NaN	8.2903	70	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6542.8			32935	7635	19047	19569							0.040348716828930264
YYEVHKELF	9	Unmodified	_YYEVHKELF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	614.3058637907001	2	614.305864	1226.59717	1.2528	0.00076963	-1.3657	-0.00083897	-0.11287	-6.9336E-05	614.3054452690492	18.988	0.071949	18.988	18.964	19.036	0	1146	34	0.93142134	0.020183206	0.93142134	377.26117	0	8.174988						79	4	3	NaN	NaN	NaN	0.40649	1	17151	17151		13.463	4.5011	1	6793.4			32936	5835	19048	19570	26276	26276					-0.007060052138058381
YYEYEFMEL	9	Oxidation (M)	_YYEYEFM(Oxidation (M))EL_		YYEYEFM(1)EL		YYEYEFM(61)EL	0	0	1		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.7653798239501	2	651.76538	1301.51621	0.68128	0.00044403	-1.0506	-0.00068473	-0.36931	-0.0002407	651.7652413086455	27.808	0.12071	27.798	27.75	27.87	-0.009552	1119	55	0.9479278	0.033003926	0.94640833	383.70087	0	13.359283						245	6	4	NaN	NaN	NaN	0.028349	1	17967	17967		61.271	44.687	1	27810			32937	596	19049	19571	26277	26277		60			-0.12249074038868457
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.2694782844	2	632.269478	1262.5244	2.2643	0.0014316	-1.6397	-0.0010367	0.62463	0.00039494	632.2682786038703	22.863	0.28908	22.863	22.814	23.103	0	1149	91	0.92958635	0.055048108	0.92958635	376.39865	0	22.28952						659	13	4	NaN	NaN	NaN	0.026443	1	18041	18041		63.765	45.795	1	190280			32938	3752	19050	19572	26278	26278					-0.09635759007255729
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.2694782844	2	632.269478	1262.5244	1.7843	0.0011282	-0.75989	-0.00048046	1.0245	0.00064773	632.2689766474508	22.886	0.28914	22.872	22.8	23.089	-0.01354	1149	94	0.92958635	0.056886137	0.9280669	376.39865	0	23.033752						630	13	4	NaN	NaN	NaN	0.015447	1	17260	17260		77.761	48.162	1	179460			32939	3752	19050	19572	26279	26279					-0.09635759007255729
YYFAVKTLI	9	Unmodified	_YYFAVKTLI_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	559.3182428844501	2	559.318243	1116.62193	1.4155	0.00079171	-4.2979	-0.0024039	-2.8824	-0.0016122	559.3172226331949	27.374	0.096561	27.374	27.35	27.446	0	1212	58	0.8910048	0.034941077	0.8910048	361.2862	0	14.167938						200	5	3	NaN	NaN	NaN	0.33202	1	13549	13549		16.858	5.8932	1	39249			32940	766	19051	19573	26280	26280					0.06828674659573153
YYFAVKTLI	9	Unmodified	_YYFAVKTLI_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	559.3182428844501	2	559.318243	1116.62193	1.0749	0.00060122	-1.6542	-0.00092523	-0.57929	-0.00032401	559.317569714186	27.422	0.12068	27.411	27.363	27.484	-0.010126	1212	55	0.8910048	0.033103883	0.88948536	361.2862	0	13.423004						169	6	2	NaN	NaN	NaN	0.060816	1	13153	13153		42.318	21.804	1	33758			32941	766	19051	19573	26281	26281					0.06828674659573153
YYFDAAEAEAW	11	Unmodified	_YYFDAAEAEAW_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.2800429707	2	668.280043	1334.54553	1.2582	0.00084084	-1.0991	-0.00073454	0.15907	0.0001063	668.2794745693643	29.207	0.26548	29.2	29.127	29.393	-0.0077209	1155	91	0.92591566	0.055018425	0.9243962	374.6934	0	22.264496						473	12	4	NaN	NaN	NaN	0.009496	1	18455	18455		69.782	50.619	1	50798			32942	2015	19052	19574	26282	26282					-0.10835793698379348
YYFDSYAHF	9	Unmodified	_YYFDSYAHF_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	606.75346407945	2	606.753464	1211.49238	1.6667	0.0010113	0.2253	0.0001367	1.892	0.001148	606.7533202024664	25.443	0.19296	25.443	25.395	25.588	0	1143	55	0.9332562	0.03302884	0.9332562	378.0568	0	13.379791						252	9	5	NaN	NaN	NaN	0.03623	1	16751	16751		52.758	43.012	1	47098			32943	2503	19053	19575	26283	26283					-0.104911266903855
YYFDSYAHF	9	Unmodified	_YYFDSYAHF_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	606.75346407945	2	606.753464	1211.49238	1.4446	0.00087652	0.20916	0.00012691	1.6538	0.0010034	606.7533453253425	25.443	0.21715	25.431	25.407	25.624	-0.012011	1143	52	0.9332562	0.031192243	0.93173677	378.0568	0	12.635803						282	10	4	NaN	NaN	NaN	0.078597	1	16078	16078		38.918	22.501	1	44201			32944	2503	19053	19575	26284	26284					-0.104911266903855
YYFDYKEQL	9	Unmodified	_YYFDYKEQL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.7953288941501	2	634.795329	1267.5761	1.4435	0.00091631	-3.8886	-0.0024685	-2.4451	-0.0015522	634.7931313994022	24.623	0.21703	24.623	24.502	24.719	0	1152	73	0.92775106	0.044033706	0.92775106	375.63937	0	17.828918						269	10	4	NaN	NaN	NaN	0.47587	1	18173	18173		10.605	1.643	1	24929			32945	1155	19054	19576	26285	26285					-0.046980153133290514
YYFDYKEQL	9	Unmodified						0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	634.795329	1267.5761	1.3689	0.00086898	-3.4973	-0.0022201	-2.1284	-0.0013511	634.7925102609249	24.647	0.12056	24.634	24.586	24.707	-0.012394	1152	46	0.92775106	0.027528465	0.9262317	375.63937		11.146088	0.005802	0.00026215	-0.00075972	NaN	10.605	158	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19533			32946	1155	19054	19576							-0.046980153133290514
YYFEEVQR	8	Unmodified	_YYFEEVQR_					0	0	0		nc|ENSG00000178773|Q9UBL6|CPNE7;ENSG00000178773|ENST00000319518|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1133.5262007938	1	1133.5262	1132.51892	1.745	0.001978	-8.2273	-0.0093258	-6.4823	-0.0073479	1133.5172874553512	29.907	0.07239	29.9	29.876	29.948	-0.0070667	60	64	1.582944	0.037097096	1.5814246	320.87598	0	7.5198975						51	4	2	NaN	NaN	NaN	0.39717	1	13720	13720		36.586	2.8882	1	2713.4			32947	5127	19055	19577	26286	26286					-0.042034377990376015
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.31897116595	2	648.318971	1294.62339	2.0709	0.0013426	-8.3668	-0.0054243	-6.2959	-0.0040817	648.316978830052	25.467	0.096529	25.467	25.419	25.515	0	1140	79	0.93509084	0.047682643	0.93509084	378.52594	0	19.302002						238	5	4	NaN	NaN	NaN	0.47445	1	18674	18674		20.513	9.343	1	44677			32948	1259	19056	19578	26287	26287					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	648.31897116595	2	648.318971	1294.62339	2.1685	0.0014059	-0.1385	-8.9794E-05	2.03	0.0013161	648.3188021606379	24.574	0.3618	24.574	24.526	24.888	0	1137	133	0.9369253	0.08068508	0.9369253	379.2685	0	32.661407						1052	16	6	NaN	NaN	NaN	9.6115E-09	1	18677	18677		136.21	97.171	1	1407700			32949	1259	19056	19578	26288	26288					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	648.31897116595	2	648.318971	1294.62339	2.2542	0.0014614	0.18029	0.00011689	2.4345	0.0015783	648.3193010839846	24.574	0.3377	24.562	24.538	24.875	-0.012392	1140	151	0.93509084	0.0917173	0.9335714	378.5259	0	37.12729						1035	15	6	NaN	NaN	NaN	6.2336E-13	1	17837	17837		147.08	91.126	1	1389800			32950	1259	19056	19578	26289	26289					-0.012137360423594146
YYFKANVFF	9	Unmodified	_YYFKANVFF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8002173068	2	599.800217	1197.58588	1.5338	0.00091999	-1.9589	-0.0011749	-0.42503	-0.00025493	599.7999847757791	28.074	0.21716	28.074	27.977	28.194	0	1137	79	0.9369253	0.047718644	0.9369253	379.59277	0	19.333069						393	10	5	NaN	NaN	NaN	0.39244	1	16391	16391		14.042	6.454	1	38968			32951	1795	19057	19579	26290	26290					-0.00500782517292464
YYFKANVFF	9	Unmodified	_YYFKANVFF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8002173068	2	599.800217	1197.58588	0.70774	0.0004245	-3.3037	-0.0019816	-2.596	-0.0015571	599.7976505997434	28.097	0.26552	28.088	27.968	28.233	-0.0089798	1137	121	0.9369253	0.07346094	0.93540585	379.59277	0	29.762512						334	12	4	NaN	NaN	NaN	0.14301	1	15747	15747		29.598	18.05	1	34460			32952	1795	19057	19579	26291	26291					-0.00500782517292464
YYFLLDLCL	9	Unmodified	_YYFLLDLCL_					0	0	0		GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant;ENSG00000184194|ENST00000332582|GPR173	GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant	GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	581.7962860218502	2	581.796286	1161.57802	1.5328	0.00089179	1.0235	0.00059547	2.5563	0.0014873	581.7968570123085	20.622	0.072233	20.622	20.597	20.67	0	1185	49	0.90755045	0.029403389	0.90755045	367.8214	0	11.916901						120	4	3	NaN	NaN	NaN	0.20577	1	15208	15208		24.961	2.8347	1	13291			32953	5342	19058	19580	26292	26292					0.0036932217094545194
YYFLLDLCL	9	Unmodified						0	0	0		GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant;ENSG00000184194|ENST00000332582|GPR173	GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant	GPR173|p.D68N|1|0.4|ENSG00000184194|chrX:53076823-53076823|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	581.796286	1161.57802	1.3329	0.00077548	0.92052	0.00053555	2.2534	0.001311	581.7973733844622	20.622	0.096508	20.608	20.608	20.704	-0.014088	1188	49	0.90571284	0.029406548	0.9041934	367.07666		11.918213	-0.0069426	-6.1081E-05	-0.0016785	NaN	24.961	98	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11781			32954	5342	19058	19580							0.0036932217094545194
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.8158673710001	2	571.815867	1141.61718	2.3291	0.0013318	-2.5462	-0.001456	-0.21716	-0.00012417	571.8146194026258	25.684	0.14477	25.684	25.66	25.805	0	1194	43	0.902037	0.025736272	0.902037	365.6619	0	10.432831						225	7	4	NaN	NaN	NaN	0.0081087	1	14528	14528		96.245	75.69	1	123810			32955	5582	19059	19581	26293	26293					0.052037905167935605
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.8158673710001	2	571.815867	1141.61718	1.9491	0.0011145	-2.0531	-0.001174	-0.10404	-5.9491E-05	571.8144999993132	25.708	0.14478	25.696	25.672	25.817	-0.0116	1197	49	0.9001988	0.029416084	0.8986794	364.91672	0	11.9244995						244	7	4	NaN	NaN	NaN	0.0081087	1	14048	14048		96.245	76.909	1	134710			32956	5582	19059	19581	26294	26294					0.052037905167935605
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.31315750655	2	605.313158	1208.61176	1.6886	0.0010222	-4.0288	-0.0024387	-2.3402	-0.0014165	605.3128420033594	29.522	0.38619	29.522	29.474	29.86	0	1152	94	0.92775106	0.056916833	0.92775106	375.83682	0	23.057312						780	17	4	NaN	NaN	NaN	0.0092442	1	16695	16695		93.929	45.927	1	513990			32957	418	19060	19582	26295	26295					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.31315750655	2	605.313158	1208.61176	0.57647	0.00034894	-2.7089	-0.0016397	-2.1324	-0.0012908	605.8131384861817	30.438	0.16892	30.432	30.336	30.505	-0.0057545	1146	40	0.93142134	0.023852885	0.9299019	377.32364	0	9.662933						115	8	2	NaN	NaN	NaN	0.17328	1	16022	16022		27.046	11.584	1	25905			32958	418	19060	19582	26296	26296					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.31315750655	2	605.313158	1208.61176	1.2345	0.00074728	0.40176	0.00024319	1.6363	0.00099047	605.3131869876394	29.569	0.33782	29.562	29.417	29.755	-0.0070667	1149	88	0.92958635	0.053239048	0.9280669	376.58026	0	21.567413						473	15	2	NaN	NaN	NaN	0.0080618	1	16025	16025		96.341	48.339	1	418710			32959	418	19060	19582	26297	26297					0.01580066934320712
YYFSKLIEF	9	Unmodified						0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	605.313158	1208.61176	1.0665	0.00064559	-7.3319	-0.0044381	-6.2654	-0.0037925	605.8091127887897	30.801	0.072403	30.801	30.753	30.825	0	1149	31	0.92958635	0.018351316	0.92958635	376.5803		7.434204	0.18438	-0.0037565	-0.0001578	NaN	27.046	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2322.1			32960	418	19060	19582							0.01580066934320712
YYFSSRDMSSP	11	Unmodified	_YYFSSRDMSSP_					0	0	0		PTPRT|p.R114M|1|0.29|ENSG00000196090|chr20:42791340-42791340|C/A|missense_variant	PTPRT|p.R114M|1|0.29|ENSG00000196090|chr20:42791340-42791340|C/A|missense_variant	PTPRT|p.R114M|1|0.29|ENSG00000196090|chr20:42791340-42791340|C/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	670.2848023851001	2	670.284802	1338.55505	1.4339	0.00096109	-10.886	-0.0072967	-9.4521	-0.0063356	670.2772134408526	27.736	0.12067	27.736	27.688	27.808	0	1116	58	0.94976085	0.03482431	0.94976085	384.33112	0	14.092041						149	5	3	NaN	NaN	NaN	0.7072	1	19382	19382		6.9844	0.12115	1	15289			32961	8108	19061	19583	26298	26298					-0.10068348684490047
YYFVFDHAL	9	Unmodified	_YYFVFDHAL_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	587.7820245536501	2	587.782025	1173.5495	1.8429	0.0010832	-0.86053	-0.00050581	0.9824	0.00057744	587.7813461803755	28.339	0.12062	28.339	28.291	28.412	0	1158	76	0.92408	0.04592544	0.92408	374.47586	0	18.6109						189	6	2	NaN	NaN	NaN	0.17818	1	15596	15596		26.732	8.9326	1	27237			32962	1742	19062	19584	26299	26299					-0.030336594139953377
YYFVFDHAL	9	Unmodified	_YYFVFDHAL_					0	0	0		ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	587.7820245536501	2	587.782025	1173.5495	0.98689	0.00058008	-3.4739	-0.0020419	-2.487	-0.0014618	587.7798035643583	28.339	0.12067	28.33	28.305	28.426	-0.0089779	1158	82	0.92408	0.04959947	0.9225606	374.4759	0	20.099792						187	6	2	NaN	NaN	NaN	0.11467	1	15041	15041		33.698	20.695	1	24833			32963	1742	19062	19584	26300	26300					-0.030336594139953377
YYFVGWLWTYF	11	Unmodified	_YYFVGWLWTYF_					0	0	0			REV__ENSG00000099194|ENST00000370355|SCD	REV__ENSG00000099194|ENST00000370355|SCD	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	772.86608853405	2	772.866089	1543.71762	1.5315	0.0011836	0.37112	0.00028682	1.9026	0.0014704	773.3692774220167	29.498	0.072439	29.498	29.474	29.546	0	999	40	1.0210962	0.023727298	1.0210962	412.63605	0	9.58847						88	4	3	NaN	NaN	NaN	0.73455	1	20689	20689		5.1889	1.2608	1	6474.8	+		32964	8766	19063	19585	26301	26301					-0.03248597220203919
YYGDVIWVI	9	Unmodified	_YYGDVIWVI_					0	0	0		ENST00000453101.1_1_2:106961501-106961627:+|nuORF;ENSG00000196821|ENST00000374023|ILRUN	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	ENST00000453101.1_1_2:106961501-106961627:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1127.5771737318	1	1127.57717	1126.5699	1.5699	0.0017702	-0.094418	-0.00010646	1.4755	0.0016638	1127.5768553361695	35.627	0.12057	35.627	35.603	35.723	0	60	61	1.582944	0.035313725	1.582944	320.89636	0	7.158844						231	6	3	NaN	NaN	NaN	0.049695	1	13964	13964		47.04	17.442	1	25146			32965	5658	19064	19586	26302	26302					0.011675112458078729
YYGEHLFML	9	Unmodified	_YYGEHLFML_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	586.7758849307502	2	586.775885	1171.53722	1.9461	0.0011419	1.8879	0.0011078	3.834	0.0022497	586.7759366229445	28.339	0.21717	28.339	28.291	28.508	0	1194	79	0.902037	0.04777533	0.902037	365.55038	0	19.360962						196	10	2	NaN	NaN	NaN	0.16171	1	15535	15535		27.789	13.747	1	41482			32966	2680	19065	19587	26303	26303					-0.04169019148662301
YYGEHLFML	9	Unmodified	_YYGEHLFML_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	586.7758849307502	2	586.775885	1171.53722	1.0579	0.00062075	0.46101	0.00027051	1.5189	0.00089126	586.7756009427553	28.363	0.12066	28.354	28.33	28.45	-0.0089779	1194	70	0.902037	0.042283356	0.9005176	365.5504	0	17.135345						147	6	2	NaN	NaN	NaN	0.29681	1	14990	14990		19.118	4.6933	1	34994			32967	2680	19065	19587	26304	26304					-0.04169019148662301
YYGGQWFLF	9	Unmodified	_YYGGQWFLF_					0	0	0		ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	590.7767422105001	2	590.776742	1179.53893	1.3215	0.00078071	0.15657	9.2498E-05	1.4781	0.00087321	590.777172723341	36.567	0.12049	36.567	36.543	36.663	0	1209	40	0.892844	0.023904443	0.892844	361.79636	0	9.686493						181	6	4	NaN	NaN	NaN	0.3389	1	15807	15807		16.417	10.166	1	15354			32968	7056	19066	19588	26305	26305					-0.04365642068432862
YYGLDGHEKK	10	Unmodified	_YYGLDGHEKK_					0	0	0		tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	tr|U7SPW4|U7SPW4_FUSNURNApolymerasesporulation-specificsigmafactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01725PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.29857007485	2	605.29857	1208.58259	1.2078	0.00073105	-0.39406	-0.00023852	0.8137	0.00049253	605.2994363709448	27.374	0.19311	27.374	27.326	27.519	0	1152	64	0.92775106	0.038552344	0.92775106	375.83688	0	15.617767						187	9	2	NaN	NaN	NaN	0.5358	1	16691	16691		17.97	2.1478	1	46442			32969	13804	19067	19589	26306	26306					-0.013360773619751853
YYGLYRDLF	9	Unmodified	_YYGLYRDLF_					0	0	0		ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	605.30058144755	2	605.300581	1208.58661	0.69384	0.00041998	-3.374	-0.0020423	-2.6802	-0.0016223	605.3001174057762	27.397	0.16893	27.387	27.363	27.532	-0.010126	1152	70	0.92775106	0.04222405	0.9262317	375.83688	0	17.105194						155	8	2	NaN	NaN	NaN	0.27507	1	16019	16019		20.513	7.5105	1	40365			32970	5878	19068	19590	26307	26307					-0.00933987868256736
YYGNSLVEF	9	Unmodified	_YYGNSLVEF_					0	0	0		nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1091.5044027192	1	1091.5044	1090.49713	2.2198	0.0024229	-0.6718	-0.00073327	1.548	0.0016897	1091.504338986332	27.857	0.16892	27.857	27.833	28.001	0	93	58	1.5635144	0.033578157	1.5635144	317.0845	0	6.8097534						196	8	2	NaN	NaN	NaN	0.01966	1	12415	12415		72.428	41.818	1	33356			32971	5422	19069	19591	26308	26308					-0.04450242547613925
YYGNSLVEF	9	Unmodified	_YYGNSLVEF_					0	0	0		nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1091.5044027192	1	1091.5044	1090.49713	1.0072	0.0010993	1.4184	0.0015482	2.4256	0.0026475	1091.506806547406	27.88	0.19312	27.87	27.822	28.015	-0.009552	90	64	1.5652816	0.037112713	1.5637622	317.4429	0	7.5265503						287	9	3	NaN	NaN	NaN	0.026469	1	12110	12110		63.731	31.278	1	36809			32972	5422	19069	19591	26309	26309					-0.04450242547613925
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	600.8186070252	2	600.818607	1199.62266	1.087	0.00065311	-2.5419	-0.0015272	-1.4548	-0.00087408	600.8170444787908	37.602	0.43324	37.602	37.434	37.867	0	1158	58	0.92408	0.034876943	0.92408	374.38132	0	14.130035						814	19	5	NaN	NaN	NaN	0.019815	1	16468	16468		91.429	43.426	1	408560			32973	3448	19070	19592	26310	26310					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8186070252	2	600.818607	1199.62266	1.2992	0.00078061	-2.492	-0.0014972	-1.1928	-0.00071664	600.8171784264688	37.6	0.50532	37.603	37.458	37.963	0.0028267	1155	58	0.92591566	0.034876943	0.9243962	375.125	0	14.130035						801	22	5	NaN	NaN	NaN	0.025119	1	15817	15817		85.344	44.388	1	358000			32974	3448	19070	19592	26311	26311					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	600.8186070252	2	600.818607	1199.62266	1.5969	0.00095942	1.0035	0.00060291	2.6003	0.0015623	601.3202223624623	38.634	0.048008	38.638	38.614	38.662	0.0040245	1158	34	0.92408	0.020194113	0.9225606	374.3813	0	8.181427						47	3	2	NaN	NaN	NaN	0.1802	1	15819	15819		55.494	28.197	1	3819.5			32975	3448	19070	19592	26312	26312					0.03083469308603526
YYGPLNLLTF	10	Unmodified						0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	600.818607	1199.62266	0.43229	0.00025973	-2.4671	-0.0014823	-2.0348	-0.0012226	600.8164159456657	38.804	0.048069	38.804	38.78	38.828	0	1158	37	0.92408	0.022028744	0.92408	374.38132		8.924713	0.083154	-0.002066	0.00075972	NaN	55.494	66	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5413.8			32976	3448	19070	19592							0.03083469308603526
YYGPSLFLL	9	Unmodified	_YYGPSLFLL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1072.5713600724	1	1072.57136	1071.56408	1.5549	0.0016678	-1.0263	-0.0011008	0.52863	0.00056699	1072.5703172656536	36.495	0.16883	36.495	36.446	36.615	0	60	76	1.582944	0.04415381	1.582944	321.0958	0	8.956482						244	8	3	NaN	NaN	NaN	0.011118	1	11635	11635		89.521	33.574	1	23934			32977	995	19071	19593	26313	26313					0.031164127341526182
YYGPSLFLL	9	Unmodified	_YYGPSLFLL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1072.5713600724	1	1072.57136	1071.56408	1.4508	0.0015561	-0.56112	-0.00060184	0.88966	0.00095422	1072.5711651895338	36.493	0.14464	36.494	36.446	36.591	0.0016747	60	79	1.582944	0.04591751	1.5814246	321.0958	0	9.3142395						250	7	3	NaN	NaN	NaN	0.030391	1	11334	11334		58.599	26.146	1	25561			32978	995	19071	19593	26314	26314					0.031164127341526182
YYGQGFPSF	9	Unmodified	_YYGQGFPSF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1065.4676232824	1	1065.46762	1064.46035	1.0322	0.0010998	0.73094	0.00077879	1.7631	0.0018785	1065.4676401789482	27.735	0.19304	27.726	27.653	27.846	-0.009552	189	121	1.5068626	0.07088232	1.5053432	305.6888	0	14.379486						471	9	3	NaN	NaN	NaN	0.041983	1	11049	11049		50.315	28.48	1	47987			32979	2879;7410;3598	19072	19594	26315	26315					-0.06930494373523288
YYGQGFPSF	9	Unmodified						0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	1065.46762	1064.46035	1.9033	0.0020279	-1.5232	-0.0016229	0.38019	0.00040508	1065.4655470869573	27.712	0.2413	27.712	27.615	27.857	0	189	118	1.5068626	0.06911385	1.5068626	305.6888		14.020752	-0.006893	-0.0011485	0.00075972	NaN	50.315	473	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52248			32980	2879;7410;3598	19072	19594							-0.06930494373523288
YYGQGFPTF	9	Unmodified	_YYGQGFPTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1079.4832733465998	1	1079.48327	1078.476	1.5756	0.0017008	1.4668	0.0015834	3.0423	0.0032842	1079.4846214436934	28.098	0.072388	28.098	28.074	28.146	0	180	70	1.5121819	0.040759444	1.5121819	306.71686	0	8.267242						165	4	3	NaN	NaN	NaN	0.23112	1	11897	11897		23.334	13.588	1	15848			32981	3714	19073	19595	26316	26316					-0.0601020785647961
YYGQGFPTF	9	Unmodified	_YYGQGFPTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1079.4832733465998	1	1079.48327	1078.476	1.5458	0.0016687	-0.38954	-0.0004205	1.1563	0.0012482	1079.482591206688	28.121	0.072393	28.112	28.088	28.161	-0.0089779	177	67	1.5139546	0.038985133	1.5124352	307.07645	0	7.9074097						163	4	3	NaN	NaN	NaN	0.041983	1	11590	11590		50.315	28.48	1	15619			32982	3714	19073	19595	26317	26317					-0.0601020785647961
YYGTGETFL	9	Unmodified	_YYGTGETFL_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.4778536177	1	1050.47785	1049.47058	2.6072	0.0027388	0.021633	2.2725E-05	2.6288	0.0027615	1050.4788580614997	26.215	0.1448	26.215	26.167	26.312	0	138	67	1.5369828	0.038952112	1.5369828	311.8561	0	7.9034424						189	7	3	NaN	NaN	NaN	0.012648	1	10597	10597		84.879	53.318	1	15447			32983	1845	19074	19596	26318	26318					-0.052179314389377396
YYGTGETFL	9	Unmodified	_YYGTGETFL_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.4778536177	1	1050.47785	1049.47058	1.9986	0.0020995	0.051977	5.4601E-05	2.0506	0.0021541	1050.4778621786033	26.215	0.12062	26.204	26.18	26.3	-0.011137	132	76	1.5405227	0.044270873	1.5390033	312.57437	0	8.9826355						145	6	2	NaN	NaN	NaN	0.0094682	1	10377	10377		93.472	61.911	1	15513			32984	1845	19074	19596	26319	26319					-0.052179314389377396
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	416.53297910263336	3	416.532979	1246.57711	2.2384	0.00093235	-2.8511	-0.0011876	-0.61272	-0.00025522	416.5321854393773	18.197	0.19183	18.197	18.149	18.34	0	1473	52	0.7302302	0.03156233	0.7302302	443.57355	0	19.172333						275	9	4	NaN	NaN	NaN	0.16939	1	17676	17676		27.296	20.166	1	61832			32985	1673	19075	19597	26320	26320					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.2958304206501	2	624.29583	1246.57711	2.1958	0.0013708	-0.46133	-0.000288	1.7345	0.0010828	624.2953130856375	18.197	0.26391	18.197	18.149	18.412	0	1170	88	0.91673553	0.05325049	0.91673553	371.2466	0	21.564667						424	12	4	NaN	NaN	NaN	0.17462	1	17677	17677		30.035	15.61	1	55022			32986	1673	19075	19597	26321	26321					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.2958304206501	2	624.29583	1246.57711	1.6441	0.0010264	-1.8886	-0.0011791	-0.24454	-0.00015266	624.295009817396	18.386	0.26408	18.372	18.3	18.564	-0.01395	1167	67	0.91857195	0.040403485	0.9170525	371.99033	0	16.36203						424	12	3	NaN	NaN	NaN	0.19435	1	16941	16941		34.454	26.771	1	59674			32987	1673	19075	19597	26322	26322					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	416.53297910263336	3	416.532979	1246.57711	1.8342	0.000764	-1.1489	-0.00047857	0.68525	0.00028543	416.5325360063911	18.386	0.36003	18.372	18.252	18.612	-0.01395	1470	58	0.7320868	0.03527558	0.73056734	444.70132	0	21.427917						432	16	5	NaN	NaN	NaN	0.17328	1	16942	16942		27.046	19.916	1	68519			32988	1673	19075	19597	26323	26323					-0.03631756153754395
YYHGGDAT	8	Unmodified	_YYHGGDAT_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	883.3580728330002	1	883.358073	882.350796	2.2109	0.0019531	-4.2622	-0.003765	-2.0512	-0.001812	883.3542791368723	23.128	0.19281	23.128	23.055	23.248	0	375	82	1.3965509	0.04818976	1.3965509	284.05765	0	9.801788						267	9	2	NaN	NaN	NaN	0.76633	1	5830	5830		13.737	3.6855	1	25513	+		32989	9194	19076	19598	26324	26324					-0.09508499992841735
YYHGGDAT	8	Unmodified	_YYHGGDAT_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	883.3580728330002	1	883.358073	882.350796	1.7436	0.0015402	-4.7421	-0.004189	-2.9985	-0.0026488	883.3543458406465	23.127	0.24111	23.114	23.041	23.283	-0.013296	372	82	1.3983358	0.048179507	1.3968164	284.42072	0	9.799683						334	11	3	NaN	NaN	NaN	0.82332	1	5708	5708		6.0903	0.62448	1	26072	+		32990	9194	19076	19598	26325	26325					-0.09508499992841735
YYHGGDAT	8	Unmodified						0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		1	883.358073	882.350796	2.2109	0.0019531	-4.2622	-0.003765	-2.0512	-0.001812	883.3542791368723	23.128	0.19281	23.128	23.055	23.248	0	375	82	1.3965509	0.04818976	1.3965509	284.05765		9.801788	0.0069616	0.00021946	-0.00013278	NaN	13.737	267	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25513	+		32991	9194	19076	19598							-0.09508499992841735
YYHGGDAT	8	Unmodified						0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	883.358073	882.350796	1.7436	0.0015402	-4.7421	-0.004189	-2.9985	-0.0026488	883.3543458406465	23.127	0.24111	23.114	23.041	23.283	-0.013296	372	82	1.3983358	0.048179507	1.3968164	284.42072		9.799683	-0.0069616	-0.0002045	0.00013278	NaN	13.737	334	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26072	+		32992	9194	19076	19598							-0.09508499992841735
YYHHDWFIF	9	Unmodified	_YYHHDWFIF_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	664.2983731096	2	664.298373	1326.58219	1.8621	0.001237	0.43761	0.0002907	2.2997	0.0015277	664.8004531075323	28.17	0.16893	28.17	28.098	28.267	0	1095	64	0.9625867	0.0384776	0.9625867	389.55713	0	15.571838						244	8	4	NaN	NaN	NaN	0.20577	1	19201	19201		24.961	16.671	1	29371			32993	7923	19077	19599	26326	26326					-0.06803452291160283
YYHPPNLLELF	11	Unmodified	_YYHPPNLLELF_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	703.36117033165	2	703.36117	1404.70779	0.63847	0.00044907	-3.4231	-0.0024077	-2.7846	-0.0019586	703.357743058839	32.925	0.14484	32.925	32.876	33.021	0	1059	58	0.98455137	0.03474933	0.98455137	398.21768	0	14.054932						136	7	2	NaN	NaN	NaN	0.37105	1	20103	20103		23.086	14.808	1	14539			32994	3682	19078	19600	26327	26327					0.021622147743983078
YYHPPNLLELF	11	Unmodified	_YYHPPNLLELF_					0	0	0		ENSG00000149503|ENST00000394818|INCENP;nc|ENSG00000149503|Q9NQS7-2|INCENP	ENSG00000149503|ENST00000394818|INCENP	ENSG00000149503|ENST00000394818|INCENP	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	703.36117033165	2	703.36117	1404.70779	0.71748	0.00050464	-2.1924	-0.001542	-1.4749	-0.0010374	703.3597325929413	33.02	0.14468	33.018	32.945	33.09	-0.0024796	1056	61	0.9863805	0.036572397	0.9848611	398.9575	0	14.792297						144	7	3	NaN	NaN	NaN	0.54514	1	19154	19154		16.858	8.568	1	11315			32995	3682	19078	19600	26328	26328					0.021622147743983078
YYIAWFVSS	9	Unmodified	_YYIAWFVSS_					0	0	0			REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	REV__NIPA1|p.G261W|1|0.32|ENSG00000170113|chr15:22824030-22824030|G/T|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.2765750350001	2	568.276575	1134.5386	1.7575	0.00099875	-2.2141	-0.0012582	-0.45663	-0.00025949	568.2757972195711	20.189	0.19229	20.189	20.141	20.333	0	1260	94	0.8615505	0.057052255	0.8615505	349.27576	0	23.12918						245	9	3	NaN	NaN	NaN	0.45297	1	14255	14255		11.548	0.94349	1	22989	+		32996	13271	19079	19601	26329	26329					-0.023290617882821607
YYICLRRRA	9	Unmodified	_YYICLRRRA_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	607.3347670034001	2	607.334767	1212.65498	1.0664	0.00064765	6.4869	0.0039397	7.5533	0.0045874	607.3384916803439	29.522	0.072376	29.522	29.498	29.57	0	972	109	1.0375156	0.065653324	1.0375156	420.28714	0	26.59552						217	4	3	NaN	NaN	NaN	0.68748	1	16803	16803		0.27539	0.045253	1	19357			32997	1862	19080	19602	26330	26330					0.057159782306143825
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3158971607501	2	610.315897	1218.61724	1.0174	0.00062096	-8.0278	-0.0048995	-7.0104	-0.0042785	610.310474277569	27.06	0.24133	27.06	26.964	27.205	0	1149	97	0.92958635	0.058756053	0.92958635	376.54538	0	23.80017						461	10	3	NaN	NaN	NaN	0.16939	1	16950	16950		27.296	5.4612	1	74584			32998	4912	19081	19603	26331	26331					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3158971607501	2	610.315897	1218.61724	2.1595	0.001318	-0.95717	-0.00058418	1.2024	0.00073383	610.3150377220393	26.167	0.26545	26.167	26.119	26.384	0	1131	130	0.94059354	0.07894915	0.94059354	381.00403	0	31.979767						725	12	5	NaN	NaN	NaN	7.355E-12	1	16955	16955		146.99	86.006	1	652480			32999	4912	19081	19603	26332	26332					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3158971607501	2	610.315897	1218.61724	0.65048	0.000397	-7.395	-0.0045133	-6.7445	-0.0041163	610.3119850902249	26.939	0.1448	26.928	26.856	27.001	-0.010645	1140	82	0.93509084	0.04955131	0.9335714	378.7751	0	20.071655						325	7	3	NaN	NaN	NaN	0.25548	1	16270	16270		21.771	5.9491	1	34818			33000	4912	19081	19603	26333	26333					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.3158971607501	2	610.315897	1218.61724	2.0687	0.0012625	-2.1061	-0.0012854	-0.037484	-2.2877E-05	610.3144008374403	26.167	0.33783	26.156	26.059	26.397	-0.011135	1131	133	0.94059354	0.08079833	0.93907416	381.00403	0	32.72879						802	15	5	NaN	NaN	NaN	8.9076E-05	1	16273	16273		123.58	65.341	1	666870			33001	4912	19081	19603	26334	26334					0.016677457261494055
YYIDKLEYL	9	Unmodified						0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	610.315897	1218.61724	0.92851	0.00056668	-5.7431	-0.0035051	-4.8146	-0.0029384	610.3119622774178	26.456	0.072378	26.445	26.445	26.517	-0.011137	1134	52	0.9387595	0.03118217	0.93724006	380.26114		12.63089	0.13909	-0.0054456	-0.0016767	NaN	146.99	98	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13727			33002	4912	19081	19603							0.016677457261494055
YYIEGIENSVF	11	Unmodified	_YYIEGIENSVF_					0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	667.3191681312	2	667.319168	1332.62378	1.2153	0.00081097	-1.8355	-0.0012248	-0.62021	-0.00041388	667.3178657636088	30.486	0.24129	30.48	30.432	30.673	-0.0057545	1128	73	0.9424274	0.04398626	0.94090796	381.3809	0	17.800354						327	11	4	NaN	NaN	NaN	0.20314	1	18434	18434		30.035	15.61	1	45318			33003	5745	19082	19604	26335	26335					-0.029223611131556027
YYIEGIENSVF	11	Unmodified						0	0	0		nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	nc|ENSG00000197969|Q96RL7-3|VPS13A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	667.319168	1332.62378	1.4398	0.0009608	-1.4122	-0.0009424	0.027573	1.84E-05	667.3176869207631	30.487	0.14477	30.487	30.463	30.608	0	1128	64	0.9424274	0.03849417	0.9424274	381.3809		15.57782	0.0033666	0.00022692	0.00075972	NaN	30.035	268	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38465			33004	5745	19082	19604							-0.029223611131556027
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.31824288445	2	589.318243	1176.62193	1.7874	0.0010534	-1.9804	-0.0011671	-0.19299	-0.00011373	589.3167580888854	29.425	0.48268	29.425	29.16	29.642	0	1179	70	0.9112251	0.0422377	0.9112251	369.2553	0	17.115997						626	21	4	NaN	NaN	NaN	0.024221	1	15712	15712		66.656	48.687	1	281320			33005	5970	19083	19605	26336	26336					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.31824288445	2	589.318243	1176.62193	2.3541	0.0013873	-0.63775	-0.00037584	1.7163	0.0010114	589.3174819840611	28.653	0.50681	28.653	28.605	29.112	0	1164	160	0.9204082	0.09739363	0.9204082	372.97656	0	39.466766						1304	22	4	NaN	NaN	NaN	0.0052656	1	15714	15714		102.05	75	1	1980700			33006	5970	19083	19605	26337	26337					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.31824288445	2	589.318243	1176.62193	0.96997	0.00057162	-2.9965	-0.0017659	-2.0265	-0.0011943	589.3165849767904	28.99	0.14478	28.982	28.982	29.127	-0.0077229	1179	76	0.9112251	0.04592544	0.90970564	369.2553	0	18.610352						263	7	3	NaN	NaN	NaN	0.16939	1	15140	15140		27.296	2.3352	1	53431			33007	5970	19083	19605	26338	26338					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000542123.5_1_12:12966301-12976268:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.31824288445	2	589.318243	1176.62193	1.999	0.0011781	-0.4385	-0.00025841	1.5605	0.00091965	589.3176207671786	28.676	0.31373	28.668	28.62	28.933	-0.0083504	1164	163	0.9204082	0.09922594	0.91888875	372.97656	0	40.20926						1192	14	4	NaN	NaN	NaN	0.0062755	1	15142	15142		99.986	60.527	1	2007200			33008	5970	19083	19605	26339	26339					0.04068674659561111
YYIFVALEAL	10	Unmodified	_YYIFVALEAL_					0	0	0			REV__nc|ENSG00000158315|Q9NX52-3|RHBDL2	REV__nc|ENSG00000158315|Q9NX52-3|RHBDL2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.3288075707501	2	601.328808	1200.64306	0.85289	0.00051287	-6.0033	-0.0036099	-5.1504	-0.0030971	601.3234227514737	22.018	0.096277	22.004	21.956	22.053	-0.013895	1170	79	0.91673553	0.047765017	0.9152161	371.4022	0	19.351318						141	5	3	NaN	NaN	NaN	0.56921	1	15854	15854		16.584	5.9792	1	17781	+		33009	10165	19084	19606	26340	26340					0.05076639968433483
YYIFVALEAL	10	Unmodified						0	0	0			REV__nc|ENSG00000158315|Q9NX52-3|RHBDL2	REV__nc|ENSG00000158315|Q9NX52-3|RHBDL2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	601.328808	1200.64306	0.85289	0.00051287	-6.0033	-0.0036099	-5.1504	-0.0030971	601.3234227514737	22.018	0.096277	22.004	21.956	22.053	-0.013895	1170	79	0.91673553	0.047765017	0.9152161	371.4022		19.351318	0.0049745	-0.00039578	-0.00075972	NaN	16.584	141	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17781	+		33010	10165	19084	19606							0.05076639968433483
YYIGTRYQVG	10	Unmodified	_YYIGTRYQVG_					0	0	0			REV__tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	REV__tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.3089377959	2	610.308938	1218.60332	0.86262	0.00052647	4.0241	0.0024559	4.8867	0.0029824	610.3121699012047	26.94	0.12067	26.94	26.819	26.94	0	1134	88	0.9387595	0.053210318	0.9387595	380.26114	0	21.553772						277	6	3	NaN	NaN	NaN	0.67523	1	16951	16951		9.746	1.4557	1	28531	+		33011	13490	19085	19607	26341	26341					0.0027651301768401026
YYIHCLKY	8	Unmodified	_YYIHCLKY_					0	0	0			REV__nc|ENSG00000125207|Q96J94-3|PIWIL1	REV__nc|ENSG00000125207|Q96J94-3|PIWIL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1102.5390140865	1	1102.53901	1101.53174	1.8872	0.0020807	2.1495	0.0023699	4.0366	0.0044505	1102.5420208071835	19.588	0.072042	19.588	19.588	19.66	0	1125	31	0.9442611	0.018335521	0.9442611	191.47444	0	3.7180176						55	4	2	NaN	NaN	NaN	0.84692	1	12901	12901		1.4396	0.36755	1	4026.8	+		33012	9389	19086	19608	26342	26342					-0.0149669794050169
YYIKYNTIETF	11	Unmodified	_YYIKYNTIETF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	727.8637428103499	2	727.863743	1453.71293	1.2339	0.00089809	-0.76875	-0.00055954	0.46512	0.00033855	727.8627151456034	24.695	0.14478	24.695	24.671	24.816	0	1017	67	1.010141	0.04019493	1.010141	408.4335	0	16.252136						217	7	3	NaN	NaN	NaN	1.7568E-11	1	20394	20394		111.05	81.013	1	23767			33013	1863	19087	19609	26343	26343					0.0042247384635629714
YYIKYNTIETF	11	Unmodified	_YYIKYNTIETF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	727.8637428103499	2	727.863743	1453.71293	1.2	0.00087341	-0.49272	-0.00035864	0.70724	0.00051478	727.8630199808072	24.695	0.14473	24.682	24.658	24.803	-0.012392	1020	70	1.0083145	0.042024195	1.006795	407.69498	0	16.99179						221	7	5	NaN	NaN	NaN	0.016347	1	19419	19419		64.375	47.516	1	22063			33014	1863	19087	19609	26344	26344					0.0042247384635629714
YYILIQIV	8	Unmodified	_YYILIQIV_					0	0	0			REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	512.80751102265	2	512.807511	1023.60047	1.3065	0.00066999	-6.5677	-0.003368	-5.2612	-0.002698	512.804828343833	34.083	0.096588	34.083	34.035	34.131	0	1269	46	0.8560222	0.027650714	0.8560222	347.48575	0	11.224274						92	5	3	NaN	NaN	NaN	0.74197	1	9531	9531		16.436	8.8489	1	9368.5	+		33015	12627	19088	19610	26345	26345					0.08961289630849478
YYILIQIV	8	Unmodified	_YYILIQIV_					0	0	0			REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	512.80751102265	2	512.807511	1023.60047	0.82692	0.00042405	-4.4381	-0.0022759	-3.6112	-0.0018519	512.8051343624664	34.082	0.072456	34.08	34.032	34.105	-0.0012474	1269	61	0.8560222	0.03687364	0.85450274	347.48572	0	14.968109						107	4	2	NaN	NaN	NaN	0.74197	1	9353	9353		16.436	3.4336	1	12046	+		33016	12627	19088	19610	26346	26346					0.08961289630849478
YYILIQIV	8	Unmodified						0	0	0			REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	512.807511	1023.60047	1.3065	0.00066999	-6.5677	-0.003368	-5.2612	-0.002698	512.804828343833	34.083	0.096588	34.083	34.035	34.131	0	1269	46	0.8560222	0.027650714	0.8560222	347.48575		11.224274	0.0012309	-0.0015793	0.00075972	NaN	16.436	92	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9368.5	+		33017	12627	19088	19610							0.08961289630849478
YYILIQIV	8	Unmodified						0	0	0			REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	REV__ENST00000533761.5_2_11:82985654-82991222:-|nuORF	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	512.807511	1023.60047	0.82692	0.00042405	-4.4381	-0.0022759	-3.6112	-0.0018519	512.8051343624664	34.082	0.072456	34.08	34.032	34.105	-0.0012474	1269	61	0.8560222	0.03687364	0.85450274	347.48572		14.968109	-0.0012309	0.00060484	-0.00075972	NaN	16.436	107	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12046	+		33018	12627	19088	19610							0.08961289630849478
YYINYTTIELF	11	Unmodified	_YYINYTTIELF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	720.3582932917001	2	720.358293	1438.70203	1.428	0.0010287	-2.9515	-0.0021261	-1.5234	-0.0010974	720.3553540735592	34.853	0.096432	34.853	34.828	34.925	-0.0006485	1017	43	1.010141	0.025575817	1.0086216	408.4737	0	10.342163						92	5	3	NaN	NaN	NaN	0.47586	1	19353	19353		19.336	10.374	1	6278.9			33019	3460	19089	19611	26347	26347					0.0002307147210558469
YYINYTTIELF	11	Unmodified						0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	720.358293	1438.70203	0.98199	0.00070739	-1.8417	-0.0013267	-0.8597	-0.00061929	720.3568514570114	34.855	0.096432	34.855	34.831	34.927	0	1023	31	1.0064877	0.01826644	1.0064877	406.9964		7.3864746	0.0010922	0.00097084	-0.0010669	NaN	19.336	57	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4194.5			33020	3460	19089	19611							0.0002307147210558469
YYISPLVGVFF	11	Unmodified	_YYISPLVGVFF_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.8499071536	2	652.849907	1303.68526	0.81135	0.00052969	-2.7497	-0.0017952	-1.9384	-0.0012655	652.8488230406276	40.753	0.11995	40.753	40.681	40.801	0	1089	28	0.96624947	0.01647973	0.96624947	391.11026	0	6.670532						65	6	2	NaN	NaN	NaN	0.51407	1	18836	18836		17.97	12.05	1	3791.8			33021	2990	19090	19612	26348	26348					0.045566153768049844
YYISPLVGVFF	11	Unmodified	_YYISPLVGVFF_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.8499071536	2	652.849907	1303.68526	0.906	0.00059149	-6.7677	-0.0044183	-5.8617	-0.0038268	652.8455791159124	40.727	0.071983	40.733	40.685	40.757	0.0067558	1086	40	0.9680805	0.023804069	0.9665611	391.85144	0	9.635223						72	4	2	NaN	NaN	NaN	0.19696	1	18004	18004		30.61	20.005	1	4821.2			33022	2990	19090	19612	26349	26349					0.045566153768049844
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.7953288941501	2	610.795329	1219.5761	1.3337	0.00081463	-2.8353	-0.0017318	-1.5016	-0.00091715	610.7945522585148	28.46	0.19311	28.46	28.412	28.605	0	1191	94	0.90387505	0.05692911	0.90387505	366.12732	0	23.059937						415	9	4	NaN	NaN	NaN	0.14619	1	16967	16967		40.154	25.729	1	82244			33023	1079	19091	19613	26350	26350					-0.024900153133330605
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.7953288941501	2	610.795329	1219.5761	0.79912	0.0004881	-4.7336	-0.0028913	-3.9345	-0.0024032	611.2921611017406	28.459	0.24129	28.451	28.403	28.644	-0.0083504	1191	88	0.90387505	0.053256273	0.9023556	366.12732	0	21.572205						429	11	3	NaN	NaN	NaN	0.0017553	1	16283	16283		86.792	59.496	1	94467			33024	1079	19091	19613	26351	26351					-0.024900153133330605
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	595.8138559983	2	595.813856	1189.61316	1.5963	0.00095108	-1.9215	-0.0011448	-0.32519	-0.00019375	595.8132590964128	23.393	0.12056	23.393	23.345	23.465	0	1173	52	0.91489893	0.031219184	0.91489893	370.69714	0	12.6493225						161	6	3	NaN	NaN	NaN	0.34922	1	16146	16146		15.822	1.3969	1	30934			33025	290	19092	19614	26352	26352					0.025937010230791202
YYIYSQTYF	9	Unmodified	_YYIYSQTYF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	624.2845970323501	2	624.284597	1246.55464	1.9375	0.0012095	-2.6105	-0.0016297	-0.67306	-0.00042018	624.2826610379061	28.05	0.26542	28.05	27.977	28.243	0	1143	85	0.9332562	0.051372707	0.9332562	377.937	0	20.8042						552	12	6	NaN	NaN	NaN	0.043119	1	17674	17674		49.833	5.1944	1	125650			33026	2303	19093	19615	26353	26353					-0.05877400342023975
YYIYSQTYF	9	Unmodified	_YYIYSQTYF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	624.2845970323501	2	624.284597	1246.55464	0.89467	0.00055853	-1.2628	-0.00078835	-0.36814	-0.00022983	624.2836872329183	28.049	0.19307	28.04	27.943	28.137	-0.0089779	1143	91	0.9332562	0.05505407	0.93173677	377.937	0	22.295044						431	9	5	NaN	NaN	NaN	0.014046	1	16939	16939		80.639	16.68	1	121170			33027	2303	19093	19615	26354	26354					-0.05877400342023975
YYKEYWERYKR	11	Unmodified	_YYKEYWERYKR_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	842.4175395051	2	842.41754	1682.82053	1.9253	0.0016219	-6.3953	-0.0053875	-4.47	-0.0037656	842.412176362771	23.393	0.072372	23.393	23.369	23.441	0	909	40	1.0757661	0.023653388	1.0757661	434.4092	0	9.551575						106	4	3	NaN	NaN	NaN	0.77466	1	20827	20827		1.1768	1.1768	1	13926	+		33028	9339	19094	19616	26355	26355					0.006428635004340322
YYKEYWERYKR	11	Unmodified						0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	842.41754	1682.82053	1.9253	0.0016219	-6.3953	-0.0053875	-4.47	-0.0037656	842.412176362771	23.393	0.072372	23.393	23.369	23.441	0	909	40	1.0757661	0.023653388	1.0757661	434.4092		9.551575	-0.0051804	-0.0012576	0.00075972	NaN	1.1768	106	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13926	+		33029	9339	19094	19616							0.006428635004340322
YYKNIGLGF	9	Unmodified	_YYKNIGLGF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	537.7845672426001	2	537.784567	1073.55458	2.0223	0.0010876	-1.5881	-0.00085408	0.43419	0.0002335	537.7836044512084	23.586	0.2168	23.586	23.538	23.754	0	1173	46	0.91489893	0.027552247	0.91489893	371.15622	0	11.177399						251	10	4	NaN	NaN	NaN	0.12945	1	11715	11715		31.561	5.4461	1	45165			33030	3377	19095	19617	26356	26356					0.02074644448634899
YYKNIGLGF	9	Unmodified	_YYKNIGLGF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	537.7845672426001	2	537.784567	1073.55458	1.5848	0.00085228	-1.2309	-0.00066198	0.35387	0.0001903	537.7836403113879	23.609	0.24103	23.596	23.548	23.789	-0.013048	1173	46	0.91489893	0.027549326	0.9133795	371.15622	0	11.1762085						275	11	4	NaN	NaN	NaN	0.025843	1	11413	11413		64.55	44.101	1	46109			33031	3377	19095	19617	26357	26357					0.02074644448634899
YYKSRFWLL	9	Unmodified	_YYKSRFWLL_					0	0	0		ENSG00000143324|ENST00000367590|XPR1;nc|ENSG00000143324|Q9UBH6-2|XPR1	ENSG00000143324|ENST00000367590|XPR1	ENSG00000143324|ENST00000367590|XPR1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	638.3478659911501	2	638.347866	1274.68118	2.0731	0.0013234	-2.0173	-0.0012878	0.0558	3.562E-05	638.3464000733486	25.515	0.1447	25.515	25.467	25.612	0	1062	37	0.9827221	0.021952868	0.9827221	397.8728	0	8.8880005						126	7	3	NaN	NaN	NaN	0.19455	1	18321	18321		25.681	11.256	1	9932.2			33032	3412	19096	19618	26358	26358					0.054825706737574365
YYKVIISYIY	10	Unmodified	_YYKVIISYIY_					0	0	0		ENST00000349820.10_1_3:121526236-121527765:-|nuORF;ENST00000498104.1_2_3:121526239-121545017:-|nuORF	ENST00000349820.10_1_3:121526236-121527765:-|nuORF	ENST00000349820.10_1_3:121526236-121527765:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	662.8630145288503	2	662.863015	1323.71148	0.89178	0.00059113	-0.98594	-0.00065354	-0.094156	-6.2412E-05	663.3638151942881	40.104	0.26459	40.104	40.032	40.296	0	1173	67	0.91489893	0.040412188	0.91489893	370.26627	0	16.355103						455	12	3	NaN	NaN	NaN	0.77884	1	19157	19157		0.79988	0	1	46272			33033	6559	19097	19619	26359	26359					0.06256884548315611
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.7685828274001	2	538.768583	1075.52261	1.1326	0.00061022	-2.4656	-0.0013284	-1.333	-0.00071818	538.7668024926323	31.79	0.12066	31.79	31.766	31.887	0	1281	49	0.84864825	0.029508412	0.84864825	344.27167	0	11.970703						123	6	3	NaN	NaN	NaN	0.47587	1	11784	11784		10.605	0.85897	1	10229			33034	793	19098	19620	26360	26360					-0.012127680251751372
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1076.5298891882	1	1076.52989	1075.52261	1.2412	0.0013362	0.63956	0.0006885	1.8808	0.0020247	1076.53021142003	31.79	0.19309	31.79	31.742	31.935	0	78	115	1.5723488	0.067174196	1.5723488	318.93164	0	13.625458						574	9	4	NaN	NaN	NaN	0.028349	1	11788	11788		61.271	39.145	1	147690			33035	793	19098	19620	26361	26361					-0.012127680251751372
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.7685828274001	2	538.768583	1075.52261	0.46831	0.00025231	-1.3327	-0.000718	-0.86435	-0.00046568	538.7679272888934	31.789	0.14482	31.785	31.761	31.906	-0.0044174	1278	43	0.85049206	0.025808692	0.8489726	345.01965	0	10.469818						159	7	3	NaN	NaN	NaN	0.49672	1	11473	11473		9.746	4.0518	1	16560			33036	793	19098	19620	26362	26362					-0.012127680251751372
YYLDAVVSF	9	Unmodified	_YYLDAVVSF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1076.5298891882	1	1076.52989	1075.52261	1.1809	0.0012713	0.22446	0.00024163	1.4054	0.001513	1076.5303742098724	31.789	0.19311	31.785	31.737	31.93	-0.0044174	78	109	1.5723488	0.06362522	1.5708294	318.93164	0	12.905609						629	9	5	NaN	NaN	NaN	0.043119	1	11478	11478		49.833	18.272	1	139190			33037	793	19098	19620	26363	26363					-0.012127680251751372
YYLDHSILL	9	Unmodified	_YYLDHSILL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	568.8029569610002	2	568.802957	1135.59136	1.4847	0.00084447	-1.1277	-0.00064144	0.35695	0.00020303	568.8024301982092	27.157	0.096502	27.157	27.133	27.229	0	1146	37	0.93142134	0.022019207	0.93142134	377.5974	0	8.926575						92	5	2	NaN	NaN	NaN	0.062072	1	14303	14303		41.785	26.322	1	16664			33038	2990	19099	19621	26364	26364					0.028988962745415847
YYLDHSILL	9	Unmodified						0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	568.802957	1135.59136	0.94492	0.00053747	-1.6109	-0.0009163	-0.666	-0.00037882	568.802002412116	27.18	0.12067	27.17	27.146	27.267	-0.010124	1146	43	0.93142134	0.025691867	0.9299019	377.5974		10.415466	0.0066295	-0.0003514	-0.00075972	NaN	41.785	128	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14543			33039	2990	19099	19621							0.028988962745415847
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	437.20486245736674	3	437.204862	1308.59276	1.1207	0.00048998	-2.6949	-0.0011782	-1.5742	-0.00068826	437.20373457888485	24.598	0.21713	24.598	24.574	24.791	0	1392	79	0.780288	0.048107207	0.780288	473.73508	0	29.207275						340	10	4	NaN	NaN	NaN	0.13602	1	18907	18907		30.61	10.706	1	75024			33040	8104	19100	19622	26365	26365					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	655.3036554527501	2	655.303655	1308.59276	1.2245	0.00080239	-1.0219	-0.00066966	0.20255	0.00013273	655.3029322634676	24.598	0.2654	24.598	24.574	24.84	0	1077	115	0.9735726	0.06963748	0.9735726	394.05896	0	28.186157						547	12	4	NaN	NaN	NaN	0.12866	1	18908	18908		36.586	24.538	1	86097			33041	8104	19100	19622	26366	26366					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	437.20486245736674	3	437.204862	1308.59276	1.0245	0.00044791	-1.3683	-0.00059823	-0.34382	-0.00015032	437.20420110500385	24.647	0.28943	24.634	24.586	24.875	-0.012394	1389	67	0.7821392	0.04071051	0.78061974	474.85898	0	24.716522						412	13	4	NaN	NaN	NaN	0.12328	1	18072	18072		32.453	16.667	1	71456			33042	8104	19100	19622	26367	26367					-0.04919469636706708
YYLDWIHHY	9	Unmodified	_YYLDWIHHY_					0	0	0		PRSS27-TPSB2|1|fusion;nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	PRSS27-TPSB2|1|fusion	PRSS27-TPSB2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	655.3036554527501	2	655.303655	1308.59276	0.94363	0.00061836	-0.80027	-0.00052442	0.14336	9.3945E-05	655.3030505585972	24.647	0.21707	24.634	24.586	24.803	-0.012394	1077	100	0.9735726	0.06046486	0.9720532	394.05896	0	24.47348						401	10	4	NaN	NaN	NaN	0.032826	1	18073	18073		55.947	12.953	1	69575			33043	8104	19100	19622	26368	26368					-0.04919469636706708
YYLEVNQLEKF	11	Unmodified	_YYLEVNQLEKF_					0	0	0		ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	723.369192329	2	723.369192	1444.72383	1.3336	0.0009647	-3.1391	-0.0022707	-1.8054	-0.001306	723.8674336281573	26.65	0.048279	26.65	26.625	26.674	0	1002	49	1.0192708	0.029207587	1.0192708	412.14917	0	11.810242						97	3	3	NaN	NaN	NaN	0.029054	1	20358	20358		57.081	37.745	1	9055.4		+	33044	3215	19101	19623	26369	26369					0.019258762206618485
YYLEVNQLEKF	11	Unmodified	_YYLEVNQLEKF_					0	0	0		ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	723.369192329	2	723.369192	1444.72383	1.1894	0.0008604	-2.2599	-0.0016348	-1.0705	-0.00077436	723.3679804970703	26.649	0.096542	26.639	26.614	26.711	-0.010645	1002	52	1.0192708	0.031034708	1.0177513	412.14917	0	12.549072						125	5	3	NaN	NaN	NaN	0.066897	1	19387	19387		45.55	29.728	1	9313.8		+	33045	3215	19101	19623	26370	26370					0.019258762206618485
YYLEYNTPMSG	11	Unmodified	_YYLEYNTPMSG_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	669.2895534119999	2	669.289553	1336.56455	1.1002	0.00073637	1.5079	0.0010092	2.6081	0.0017456	669.290742845084	29.569	0.193	29.562	29.514	29.707	-0.0070667	1104	55	0.9570911	0.03297907	0.95557165	387.30325	0	13.345551						222	9	3	NaN	NaN	NaN	0.63477	1	18484	18484		11.739	1.3787	1	30684	+		33046	8637	19102	19624	26371	26371					-0.09026580398995065
YYLFDSLWE	9	Unmodified	_YYLFDSLWE_					0	0	0			REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.28459703235	2	618.284597	1234.55464	1.2506	0.00077324	-8.1682	-0.0050503	-6.9176	-0.004277	618.7824111533341	34.589	0.072414	34.589	34.517	34.589	0	1161	82	0.9222442	0.04954064	0.9222442	373.5173	0	20.064423						101	4	2	NaN	NaN	NaN	0.51184	1	17378	17378		9.1232	1.5356	1	11537	+		33047	8172	19103	19625	26372	26372					-0.05325400342053399
YYLFDSLWE	9	Unmodified						0	0	0			REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	618.284597	1234.55464	1.2506	0.00077324	-8.1682	-0.0050503	-6.9176	-0.004277	618.7824111533341	34.589	0.072414	34.589	34.517	34.589	0	1161	82	0.9222442	0.04954064	0.9222442	373.5173		20.064423	0.00098229	0.0036662	-0.001076	NaN	9.1232	101	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11537	+		33048	8172	19103	19625							-0.05325400342053399
YYLFDSLWE	9	Unmodified						0	0	0			REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	REV__CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	618.284597	1234.55464	0.74131	0.00045834	-13.541	-0.0083719	-12.799	-0.0079136	618.7791331411104	34.588	0.19294	34.587	34.491	34.684	-0.0006485	1155	52	0.92591566	0.031205654	0.9243962	375.0043		12.638611	-0.00098229	-0.0029771	0.001076	NaN	9.1232	169	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15201	+		33049	8172	19103	19625							-0.05325400342053399
YYLFFRCLP	9	Unmodified	_YYLFFRCLP_					0	0	0		ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.3098949236	2	611.309895	1220.60524	1.4861	0.0009085	-1.3662	-0.00083519	0.11992	7.3309E-05	611.3084045481953	22.67	0.24124	22.67	22.549	22.79	0	1167	82	0.91857195	0.04956734	0.91857195	372.077	0	20.077759						456	11	4	NaN	NaN	NaN	0.31766	1	16997	16997		17.78	0	1	100770			33050	6774	19104	19626	26373	26373					0.0037585050195048098
YYLFKRATE	9	Unmodified	_YYLFKRATE_					0	0	0			REV__ENSG00000115159|ENST00000438166|GPD2	REV__ENSG00000115159|ENST00000438166|GPD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	595.8138559983	2	595.813856	1189.61316	1.4708	0.00087632	-0.29401	-0.00017517	1.1768	0.00070114	595.8141731411964	23.441	0.14481	23.427	23.379	23.524	-0.013294	1170	61	0.91673553	0.03672248	0.9152161	371.44128	0	14.87915						209	7	3	NaN	NaN	NaN	0.13602	1	15534	15534		30.61	3.3139	1	34619	+		33051	9180	19105	19627	26374	26374					0.025937010230791202
YYLFKRATE	9	Unmodified						0	0	0			REV__ENSG00000115159|ENST00000438166|GPD2	REV__ENSG00000115159|ENST00000438166|GPD2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	595.813856	1189.61316	1.4708	0.00087632	-0.29401	-0.00017517	1.1768	0.00070114	595.8141731411964	23.441	0.14481	23.427	23.379	23.524	-0.013294	1170	61	0.91673553	0.03672248	0.9152161	371.44128		14.87915	0.017253	0.00094447	0.00015859	NaN	30.61	209	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34619	+		33052	9180	19105	19627							0.025937010230791202
YYLFWYKQ	8	Unmodified	_YYLFWYKQ_					0	0	0		nc|ENSG00000211817|A0JD32|TRAV38-2DV8;nc|ENSG00000211816|A0A0B4J264|TRAV38-1;nc|ENSG00000211799|A0A0A6YYK7|TRAV19	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	nc|ENSG00000211817|A0JD32|TRAV38-2DV8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	404.20257036006666	3	404.20257	1209.58588	2.0193	0.00081622	7.1226	0.002879	9.142	0.0036952	404.2048889150371	18.146	0.096033	18.132	18.084	18.18	-0.013948	1470	55	0.7320868	0.03340262	0.73056734	444.85	0	20.296997						102	5	3	NaN	NaN	NaN	0.79607	1	16047	16047		9.746	0	1	8590.4			33053	8028	19106	19628	26375	26375					-0.010527825172857774
YYLGNPAEF	9	Unmodified	_YYLGNPAEF_					0	0	0		nc|ENSG00000049449|Q15293-2|RCN1;ENSG00000049449|ENST00000054950|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1073.4938380329	1	1073.49384	1072.48656	1.9519	0.0020953	-1.0767	-0.0011559	0.87517	0.00093949	1073.4924698816612	26.456	0.19307	26.456	26.384	26.577	0	135	109	1.5387528	0.06377375	1.5387528	312.1283	0	12.936188						330	9	4	NaN	NaN	NaN	0.010404	1	11655	11655		91.563	41.73	1	40620			33054	565	19107	19629	26376	26376					-0.046782252020420856
YYLGNPAEF	9	Unmodified	_YYLGNPAEF_					0	0	0		nc|ENSG00000049449|Q15293-2|RCN1;ENSG00000049449|ENST00000054950|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1073.4938380329	1	1073.49384	1072.48656	1.4823	0.0015913	-0.60218	-0.00064644	0.88014	0.00094483	1073.493174327702	26.456	0.21714	26.445	26.397	26.614	-0.011137	132	106	1.5405227	0.061998963	1.5390033	312.4873	0	12.576172						383	10	3	NaN	NaN	NaN	0.012495	1	11354	11354		85.344	40.706	1	45554			33055	565	19107	19629	26377	26377					-0.046782252020420856
YYLGNPAEF	9	Unmodified						0	0	0		nc|ENSG00000049449|Q15293-2|RCN1;ENSG00000049449|ENST00000054950|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	nc|ENSG00000049449|Q15293-2|RCN1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1073.49384	1072.48656	2.536	0.0027223	-2.7856	-0.0029904	-0.24967	-0.00026802	1074.4943486535692	26.336	0.072378	26.324	26.3	26.373	-0.011137	120	34	1.5476005	0.019458652	1.5460811	313.923		3.947052	-0.066046	-0.0015128	0.0036641	NaN	91.563	45	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2891.6			33056	565	19107	19629							-0.046782252020420856
YYLHVQSML	9	Unmodified	_YYLHVQSML_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	577.2891594815002	2	577.289159	1152.56377	1.6227	0.00093674	-2.1749	-0.0012555	-0.55224	-0.0003188	577.7878029868309	24.791	0.19304	24.791	24.719	24.912	0	1170	82	0.91673553	0.04962623	0.91673553	371.57816	0	20.114899						298	9	4	NaN	NaN	NaN	0.38313	1	14889	14889		22.126	8.0848	1	37278			33057	5053	19108	19630	26378	26378					-0.006413302573491819
YYLHVQSML	9	Unmodified	_YYLHVQSML_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	577.2891594815002	2	577.289159	1152.56377	1.2326	0.00071157	-3.0818	-0.0017791	-1.8492	-0.0010675	577.289440496704	24.815	0.12063	24.803	24.779	24.9	-0.012394	1170	79	0.91673553	0.04778564	0.9152161	371.57816	0	19.368835						263	6	4	NaN	NaN	NaN	0.37272	1	14387	14387		21.835	9.2471	1	29303			33058	5053	19108	19630	26379	26379					-0.006413302573491819
YYLHVQSML	9	Oxidation (M)	_YYLHVQSM(Oxidation (M))L_		YYLHVQSM(1)L		YYLHVQSM(50)L	0	0	1		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	585.2866167925501	2	585.286617	1168.55868	1.4585	0.00085366	-2.439	-0.0014275	-0.98047	-0.00057385	585.2850350744644	21.44	0.048092	21.426	21.378	21.426	-0.014006	1179	64	0.9112251	0.03859818	0.90970564	369.28482	0	15.6423645						97	3	3	NaN	NaN	NaN	0.041983	1	14902	14902		50.315	24.2	1	16392			33059	5053	19108	19631	26380	26380		529			-0.01885634119958013
YYLKDYSAIA	10	Unmodified	_YYLKDYSAIA_					0	0	0			REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	REV__tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	603.8056966152001	2	603.805697	1205.59684	1.5694	0.00094762	3.7527	0.0022659	5.3221	0.0032135	603.8080215197447	19.804	0.072035	19.804	19.804	19.876	0	1167	73	0.91857195	0.044066966	0.91857195	372.12875	0	17.852264						111	4	2	NaN	NaN	NaN	0.63397	1	16626	16626		12.57	2.326	1	18473	+		33060	13472	19109	19632	26381	26381					0.002265750663354993
YYLKFDPLT	9	Unmodified	_YYLKFDPLT_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	580.30533247445	2	580.305332	1158.59611	2.3526	0.0013652	-9.1219	-0.0052935	-6.7693	-0.0039282	580.2974271950544	25.781	0.14479	25.781	25.781	25.926	0	1182	64	0.9093879	0.03859818	0.9093879	368.57727	0	15.643951						211	7	3	NaN	NaN	NaN	0.44082	1	15101	15101		12.049	1.4437	1	69009	+		33061	13037	19110	19633	26382	26382					0.02315780417256974
YYLKFDPLT	9	Unmodified						0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	580.305332	1158.59611	2.3526	0.0013652	-9.1219	-0.0052935	-6.7693	-0.0039282	580.2974271950544	25.781	0.14479	25.781	25.781	25.926	0	1182	64	0.9093879	0.03859818	0.9093879	368.57727		15.643951	-0.018209	0.00024416	0.0016784	NaN	12.049	211	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69009	+		33062	13037	19110	19633							0.02315780417256974
YYLKRFFEV	9	Unmodified	_YYLKRFFEV_					0	0	0		ENST00000543425.1_1_12:124075023-124081273:+|nuORF;ENSG00000086598|ENST00000262225|TMED2	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	ENST00000543425.1_1_12:124075023-124081273:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	422.22900801123325	3	422.229008	1263.66519	1.316	0.00055565	-1.8593	-0.00078506	-0.54334	-0.00022942	422.2278635219841	24.068	0.12064	24.068	24.019	24.14	0	1419	34	0.76361835	0.020382881	0.76361835	463.78635	0	12.379608						97	6	3	NaN	NaN	NaN	0.31737	1	18083	18083		11.739	5.1215	1	7730.7			33063	991	19111	19634	26383	26383					0.04390864436822994
YYLKTYNVY	9	Unmodified	_YYLKTYNVY_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	613.80823930415	2	613.808239	1225.60193	1.2035	0.00073873	7.0459	0.0043248	8.2494	0.0050636	613.8142478605538	25.25	0.072334	25.238	25.238	25.31	-0.012011	1140	91	0.93509084	0.055048108	0.9335714	378.75085	0	22.296783						162	4	3	NaN	NaN	NaN	0.31737	1	16443	16443		17.799	2.3363	1	21419	+		33064	9524	19112	19635	26384	26384					-0.001851210710583473
YYLLADYHF	9	Unmodified	_YYLLADYHF_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	602.7873068968	2	602.787307	1203.56006	1.5828	0.00095412	-1.8515	-0.001116	-0.26862	-0.00016192	602.7859885503518	28.291	0.16888	28.291	28.243	28.412	0	1122	70	0.9460945	0.04217851	0.9460945	383.28598	0	17.087555						297	8	4	NaN	NaN	NaN	0.03623	1	16570	16570		52.758	26.027	1	56653			33065	1178	19113	19636	26385	26385					-0.03357676759583228
YYLLADYHF	9	Unmodified	_YYLLADYHF_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.7873068968	2	602.787307	1203.56006	0.75638	0.00045594	-2.3144	-0.0013951	-1.558	-0.00093915	602.7851856160954	28.29	0.16893	28.281	28.257	28.426	-0.0089779	1122	67	0.9460945	0.0403468	0.9445751	383.28598	0	16.34549						264	8	4	NaN	NaN	NaN	0.032417	1	15920	15920		55.947	5.9148	1	47933			33066	1178	19113	19636	26386	26386					-0.03357676759583228
YYLLESLL	8	Unmodified	_YYLLESLL_					0	0	0			REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF	REV__ENST00000480136.1_1_1:171303670-171311201:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1013.5553756572002	1	1013.55538	1012.5481	1.7837	0.0018078	-4.8705	-0.0049366	-3.0869	-0.0031287	1013.5506893424861	27.567	0.096539	27.567	27.543	27.639	0	213	52	1.4926696	0.030174494	1.4926696	303.00818	0	6.125366						127	5	2	NaN	NaN	NaN	0.79379	1	9087	9087		10.052	0	1	12726	+		33067	12375	19114	19637	26387	26387					0.04232706497248273
YYLLLLPGSY	10	Unmodified	_YYLLLLPGSY_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.3288075707501	2	601.328808	1200.64306	1.4734	0.00088599	-5.4863	-0.0032991	-4.0129	-0.0024131	601.3257191369503	21.994	0.1446	21.994	21.97	22.115	0	1170	73	0.91673553	0.044090807	0.91673553	371.4022	0	17.862732						170	7	3	NaN	NaN	NaN	0.71736	1	16504	16504		6.8632	0.94343	1	21595			33068	2953	19115	19638	26388	26388					0.05076639968433483
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	599.8087706204001	2	599.808771	1197.60299	1.7101	0.0010257	-1.2081	-0.00072461	0.50203	0.00030112	599.8083669178542	24.888	0.21718	24.888	24.84	25.057	0	1146	103	0.93142134	0.062414765	0.93142134	377.3628	0	25.2872						424	10	4	NaN	NaN	NaN	0.00019594	1	16396	16396		117.07	61.474	1	343600			33069	7930	19116	19639	26389	26389					0.01209093297848085
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-2|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ	nc|ENSG00000114353|P04899-2|GNAI2	nc|ENSG00000114353|P04899-2|GNAI2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	599.8087706204001	2	599.808771	1197.60299	1.4963	0.00089748	-1.7598	-0.0010555	-0.26349	-0.00015804	599.8078338052162	24.912	0.2895	24.9	24.827	25.117	-0.012392	1149	97	0.92958635	0.05873698	0.9280669	376.61935	0	23.79715						449	13	4	NaN	NaN	NaN	0.0092442	1	15752	15752		93.929	46.793	1	331420			33070	7930	19116	19639	26390	26390					0.01209093297848085
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	588.7822215189001	2	588.782222	1175.54989	2.0762	0.0012225	0.28414	0.00016729	2.3604	0.0013897	588.7823902469436	27.953	0.28956	27.953	27.905	28.194	0	1200	115	0.89836043	0.0698784	0.89836043	364.046	0	28.317078						552	13	3	NaN	NaN	NaN	0.013696	1	15657	15657		81.699	17.969	1	190860			33071	4057	19117	19640	26391	26391					-0.030862844848115856
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	588.7822215189001	2	588.782222	1175.54989	1.2414	0.00073093	0.33044	0.00019456	1.5719	0.00092549	588.7823883655964	27.977	0.28957	27.968	27.871	28.161	-0.0089798	1200	112	0.89836043	0.06802839	0.896841	364.046	0	27.567413						685	13	4	NaN	NaN	NaN	0.0062755	1	15086	15086		99.986	18.286	1	202790			33072	4057	19117	19640	26392	26392					-0.030862844848115856
YYLNFISAI	9	Unmodified	_YYLNFISAI_					0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.2922250992001	2	552.292225	1102.5699	1.2859	0.00071018	-0.94256	-0.00052057	0.34332	0.00018961	552.2916927290488	34.445	0.1448	34.445	34.396	34.541	0	1209	67	0.892844	0.040477753	0.892844	362.0882	0	16.415558						242	7	4	NaN	NaN	NaN	0.14945	1	12948	12948		28.667	10.886	1	32380			33073	1088	19118	19641	26393	26393					0.02271511245817237
YYLNFISAI	9	Unmodified						0	0	0		nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	nc|ENSG00000092108|Q8WVM8-2|SCFD1	nc|ENSG00000092108|Q8WVM8-2|SCFD1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	552.292225	1102.5699	1.1191	0.0006181	-1.504	-0.00083062	-0.3848	-0.00021252	552.2918552639243	34.443	0.1688	34.443	34.395	34.563	-0.0006485	1206	64	0.894683	0.03863573	0.89316356	362.83398		15.668549	-0.00094974	-0.00042837	0.00015978	NaN	28.667	247	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33145			33074	1088	19118	19641							0.02271511245817237
YYLNLIELF	9	Unmodified	_YYLNLIELF_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	594.32098253865	2	594.320983	1186.62741	0.76019	0.0004518	-3.3006	-0.0019616	-2.5404	-0.0015098	594.3187510868084	40.777	0.28808	40.777	40.705	40.993	0	1179	58	0.9112251	0.034895778	0.9112251	369.21924	0	14.139435						435	13	4	NaN	NaN	NaN	0.030391	1	16059	16059		58.599	20.468	1	80739			33075	4073	19119	19642	26394	26394					0.041563534513670675
YYLNLIELF	9	Unmodified	_YYLNLIELF_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	594.32098253865	2	594.320983	1186.62741	0.6938	0.00041234	-3.4671	-0.0020606	-2.7733	-0.0016482	594.3191057275487	40.751	0.31216	40.757	40.661	40.974	0.0067558	1176	61	0.9130621	0.036726475	0.91154265	369.96356	0	14.881195						414	14	4	NaN	NaN	NaN	0.032764	1	15447	15447		55.494	17.363	1	75905			33076	4073	19119	19642	26395	26395					0.041563534513670675
YYLNRTHML	9	Unmodified	_YYLNRTHML_					0	0	0		ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	605.8055080374501	2	605.805508	1209.59646	1.7253	0.0010452	-1.5892	-0.00096274	0.13612	8.2459E-05	605.8053112924889	17.933	0.095959	17.933	17.909	18.005	0	1107	37	0.9552588	0.021988392	0.9552588	386.97678	0	8.907501						105	5	3	NaN	NaN	NaN	0.041983	1	16721	16721		50.315	17.862	1	10308			33077	3543	19120	19643	26396	26396					4.876865477854153E-05
YYLNRTHML	9	Oxidation (M)	_YYLNRTHM(Oxidation (M))L_		YYLNRTHM(1)L		YYLNRTHM(46)L	0	0	1		ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.8029653485	2	613.802965	1225.59138	0.97117	0.00059611	-2.2366	-0.0013729	-1.2655	-0.00077674	613.8021550336971	15.294	0.19217	15.294	15.222	15.414	0	1140	34	0.93509084	0.02018106	0.93509084	378.75092	0	8.174164						122	9	2	NaN	NaN	NaN	0.052553	1	17119	17119		45.827	23.992	1	10926			33078	3543	19120	19644	26397	26397		397			-0.012394269971309768
YYLPANGGVPK	11	Unmodified	_YYLPANGGVPK_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.8138559983001	2	589.813856	1177.61316	0.92215	0.0005439	8.6443	0.0050985	9.5665	0.0056424	589.819604279615	29.449	0.12066	29.442	29.369	29.49	-0.0070667	1176	46	0.9130621	0.027552247	0.91154265	369.99606	0	11.164886						174	6	4	NaN	NaN	NaN	0.72685	1	15182	15182		5.6942	0.78442	1	54898	+		33079	10117	19121	19645	26398	26398					0.03145701023095171
YYLPHLFPSF	10	Unmodified	_YYLPHLFPSF_					0	0	0		ENST00000424981.1_1_20:20616022-20621447:-|nuORF;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	ENST00000424981.1_1_20:20616022-20621447:-|nuORF	ENST00000424981.1_1_20:20616022-20621447:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	642.3265992328002	2	642.326599	1282.63865	1.2448	0.00079956	-4.3154	-0.0027719	-3.0706	-0.0019723	642.8240754583685	31.79	0.19307	31.79	31.718	31.911	0	1125	61	0.9442611	0.036674976	0.9442611	382.27576	0	14.847565						191	9	3	NaN	NaN	NaN	0.091497	1	18471	18471		47.136	34.548	1	15596			33080	5554	19122	19646	26399	26399					0.008631755455326129
YYLPHLFPSF	10	Unmodified	_YYLPHLFPSF_					0	0	0		ENST00000424981.1_1_20:20616022-20621447:-|nuORF;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	ENST00000424981.1_1_20:20616022-20621447:-|nuORF	ENST00000424981.1_1_20:20616022-20621447:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	642.3265992328002	2	642.326599	1282.63865	1.2053	0.0007742	-3.4743	-0.0022316	-2.2689	-0.0014574	642.8248657911265	31.838	0.24136	31.833	31.712	31.954	-0.0044155	1122	64	0.9460945	0.0385108	0.9445751	383.018	0	15.59079						178	11	2	NaN	NaN	NaN	0.15427	1	17650	17650		39.459	26.871	1	18854			33081	5554	19122	19646	26400	26400					0.008631755455326129
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.8060309662001	2	618.806031	1235.59751	1.8813	0.0011642	-1.0204	-0.00063143	0.8609	0.00053273	618.8056638143635	23.32	0.2653	23.32	23.224	23.489	0	1152	73	0.92775106	0.04405749	0.92775106	375.7441	0	17.843536						450	12	4	NaN	NaN	NaN	0.0021892	1	17418	17418		85.344	45.886	1	196700			33082	4292	19123	19647	26401	26401					-0.010865854939538622
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.8060309662001	2	618.806031	1235.59751	0.85788	0.00053086	-7.0926	-0.004389	-6.2348	-0.0038581	618.8009936748025	24.526	0.096539	24.514	24.489	24.586	-0.012392	1152	58	0.92775106	0.034869432	0.9262317	375.74414	0	14.122314						132	5	2	NaN	NaN	NaN	0.5917	1	16686	16686		15.463	4.8577	1	11249			33083	4292	19123	19647	26402	26402					-0.010865854939538622
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.8060309662001	2	618.806031	1235.59751	1.6431	0.0010167	-0.37213	-0.00023028	1.2709	0.00078646	618.8058512718535	23.344	0.2413	23.331	23.283	23.524	-0.013294	1152	73	0.92775106	0.04405272	0.9262317	375.7441	0	17.841583						373	11	3	NaN	NaN	NaN	5.552E-05	1	16687	16687		113.18	68.881	1	191120			33084	4292	19123	19647	26403	26403					-0.010865854939538622
YYLQGGFSRF	10	Unmodified	_YYLQGGFSRF_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.30365545275	2	619.303655	1236.59276	1.4573	0.00090252	-2.7381	-0.0016957	-1.2807	-0.00079316	619.3015743677122	23.923	0.2653	23.923	23.851	24.116	0	1149	100	0.92958635	0.060588896	0.92958635	376.48404	0	24.538605						606	12	4	NaN	NaN	NaN	0.02603	1	17442	17442		61.199	24.612	1	137100			33085	2678	19124	19648	26404	26404					-0.016074696367240904
YYLQGGFSRF	10	Unmodified	_YYLQGGFSRF_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	619.30365545275	2	619.303655	1236.59276	1.2359	0.00076541	-3.1065	-0.0019239	-1.8706	-0.0011584	619.3016392890581	23.947	0.28938	23.934	23.813	24.103	-0.013048	1149	103	0.92958635	0.06242156	0.9280669	376.48407	0	25.280853						489	13	4	NaN	NaN	NaN	0.044307	1	16713	16713		53.652	25.863	1	116160			33086	2678	19124	19648	26405	26405					-0.016074696367240904
YYLQGGFSRF	10	Unmodified						0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	619.303655	1236.59276	0.91554	0.000567	-2.4399	-0.0015111	-1.5244	-0.00094407	619.3030700796801	24.14	0.12062	24.127	24.103	24.224	-0.012749	1173	76	0.91489893	0.045895696	0.9133795	370.5356		18.58783	0.1021	0.00029604	-0.0081034	NaN	61.199	212	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31096			33087	2678	19124	19648							-0.016074696367240904
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		VPS53-ABR|1|fusion;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;EWSR1-ABR|1|fusion;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	VPS53-ABR|1|fusion	VPS53-ABR|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.8216810304	2	632.821681	1263.62881	1.9464	0.0012317	-2.648	-0.0016757	-0.70161	-0.00044399	632.8205200727774	25.588	0.19301	25.576	25.479	25.672	-0.0116	1128	64	0.9424274	0.038506687	0.94090796	381.59454	0	15.591583						291	9	3	NaN	NaN	NaN	0.63397	1	17286	17286		12.57	5.5854	1	34497			33088	14023	19125	19649	26406	26406					0.007539875401107565
YYLSDSPLL	9	Unmodified	_YYLSDSPLL_					0	0	0		ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1070.5404538745	1	1070.54045	1069.53318	1.5673	0.0016778	-0.17131	-0.00018339	1.396	0.0014944	1070.5410292660886	29.474	0.072479	29.474	29.449	29.522	0	75	61	1.5741152	0.035336137	1.5741152	319.31256	0	7.1679993						115	4	3	NaN	NaN	NaN	0.062072	1	11540	11540		41.785	20.013	1	10012			33089	832	19126	19650	26407	26407					0.001192146292396501
YYLSDSPLL	9	Unmodified	_YYLSDSPLL_					0	0	0		ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1070.5404538745	1	1070.54045	1069.53318	1.0959	0.0011732	-1.2491	-0.0013372	-0.15316	-0.00016397	1070.5390793237857	29.473	0.072407	29.466	29.442	29.514	-0.0070667	81	61	1.5705823	0.035328627	1.5690628	318.59592	0	7.1664734						95	4	2	NaN	NaN	NaN	0.018156	1	11256	11256		74.332	50.998	1	8489.7			33090	832	19126	19650	26408	26408					0.001192146292396501
YYLSHDGRR	9	Unmodified	_YYLSHDGRR_					0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;ENST00000517734.5_1_19:15784518-15794591:+|nuORF;ENST00000550627.5_1_19:15793132-15807110:+|nuORF;ENST00000518629.7_2_19:15791179-15807110:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	ENSG00000186204|ENST00000550308|CYP4F12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.7887038803001	2	583.788704	1165.56285	1.4527	0.00084806	-5.3179	-0.0031046	-3.8653	-0.0022565	584.2869467694111	24.333	0.072401	24.32	24.32	24.393	-0.012749	1170	55	0.91673553	0.03306806	0.9152161	371.52917	0	13.401642						107	4	3	NaN	NaN	NaN	0.23112	1	14791	14791		23.334	1.4994	1	14866			33091	5458	19127	19651	26409	26409					-0.01330408582043674
YYLSHDGRR	9	Unmodified	_YYLSHDGRR_					0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;ENST00000517734.5_1_19:15784518-15794591:+|nuORF;ENST00000550627.5_1_19:15793132-15807110:+|nuORF;ENST00000518629.7_2_19:15791179-15807110:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	ENSG00000186204|ENST00000550308|CYP4F12	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	583.7887038803001	2	583.788704	1165.56285	1.4418	0.00084173	-2.1848	-0.0012755	-0.743	-0.00043375	584.2902040988861	24.309	0.072412	24.296	24.224	24.296	-0.012749	1158	52	0.92408	0.031205654	0.9225606	374.50568	0	12.646851						123	4	3	NaN	NaN	NaN	0.23112	1	14792	14792		23.334	1.4994	1	21636			33092	5458	19127	19651	26410	26410					-0.01330408582043674
YYLSHDGRR	9	Unmodified						0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;ENST00000517734.5_1_19:15784518-15794591:+|nuORF;ENST00000550627.5_1_19:15793132-15807110:+|nuORF;ENST00000518629.7_2_19:15791179-15807110:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	ENSG00000186204|ENST00000550308|CYP4F12	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	583.788704	1165.56285	1.6435	0.00095945	-2.7803	-0.0016231	-1.1368	-0.00066364	584.2884618944231	24.285	0.14475	24.285	24.237	24.381	0	1158	70	0.92408	0.04222405	0.92408	374.50568		17.112305	-0.017625	0.0016998	0.004432	NaN	23.334	322	7	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41624			33093	5458	19127	19651							-0.01330408582043674
YYLSHLERI	9	Unmodified	_YYLSHLERI_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.3193055169501	2	597.319306	1192.62406	1.3669	0.00081646	-0.76057	-0.0004543	0.60631	0.00036216	597.319074802735	20.045	0.14419	20.045	19.972	20.117	0	1146	49	0.93142134	0.029362142	0.93142134	377.38074	0	11.896545						122	7	2	NaN	NaN	NaN	0.064504	1	16228	16228		40.957	7.2586	1	12462			33094	638	19128	19652	26411	26411					0.03545103397368621
YYLSHLERI	9	Unmodified	_YYLSHLERI_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	398.54862916683334	3	398.548629	1192.62406	1.3278	0.00052918	-0.6357	-0.00025336	0.69207	0.00027582	398.54883144991226	20.045	0.12016	20.045	19.997	20.117	0	1398	40	0.77658504	0.024073124	0.77658504	471.9648	0	14.63031						143	6	4	NaN	NaN	NaN	0.097143	1	16229	16229		32.377	14.143	1	16441			33095	638	19128	19652	26412	26412					0.03545103397368621
YYLSHLERI	9	Unmodified	_YYLSHLERI_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.3193055169501	2	597.319306	1192.62406	1.2105	0.00072304	-1.6463	-0.00098339	-0.43587	-0.00026035	597.3180081878126	20.188	0.096367	20.174	20.126	20.222	-0.014141	1158	37	0.92408	0.022028744	0.9225606	374.40628	0	8.9253235						110	5	3	NaN	NaN	NaN	0.21451	1	15613	15613		24.4	7.8161	1	9637			33096	638	19128	19652	26413	26413					0.03545103397368621
YYLSHLERI	9	Unmodified	_YYLSHLERI_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	398.54862916683334	3	398.548629	1192.62406	1.3872	0.00055287	-1.2418	-0.00049492	0.14541	5.7951E-05	398.5484425216979	20.188	0.19257	20.174	20.102	20.295	-0.014141	1401	37	0.77473325	0.022222579	0.7732138	470.8394	0	13.505646						145	9	2	NaN	NaN	NaN	0.14787	1	15614	15614		25.681	5.1681	1	16238			33097	638	19128	19652	26414	26414					0.03545103397368621
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	579.3080721286501	2	579.308072	1156.60159	1.8721	0.0010845	-1.5923	-0.00092244	0.27976	0.00016207	579.306836684643	23.947	0.16884	23.947	23.923	24.092	0	1179	58	0.9112251	0.034907043	0.9112251	369.32938	0	14.148224						279	8	3	NaN	NaN	NaN	3.0773E-07	1	15041	15041		130.13	76.995	1	88269			33098	1003	19129	19653	26415	26415					0.029554592091017184
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.3080721286501	2	579.308072	1156.60159	1.6673	0.00096586	-2.1064	-0.0012203	-0.43918	-0.00025442	579.3068582486455	23.971	0.14474	23.958	23.91	24.054	-0.01305	1179	55	0.9112251	0.03306806	0.90970564	369.32938	0	13.402863						275	7	4	NaN	NaN	NaN	0.028569	1	14541	14541		60.984	24.397	1	85813			33099	1003	19129	19653	26416	26416					0.029554592091017184
YYLSPPESF	9	Unmodified	_YYLSPPESF_					0	0	0		nc|ENSG00000058262|P61619-3|SEC61A1;ENSG00000058262|ENST00000243253|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	nc|ENSG00000058262|P61619-3|SEC61A1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1102.5091537460999	1	1102.50915	1101.50188	1.3797	0.0015211	-0.97262	-0.0010723	0.40705	0.00044877	1102.508321039822	27.108	0.16893	27.098	27.025	27.194	-0.010126	96	70	1.5617468	0.040660262	1.5602274	316.6865	0	8.244965						302	8	3	NaN	NaN	NaN	0.0047854	1	12555	12555		103.03	55.705	1	26015			33100	622	19130	19654	26417	26417					-0.04481358404859748
YYLSRLQDW	9	Unmodified	_YYLSRLQDW_					0	0	0			REV__ENSG00000125434|ENST00000577745|SLC25A35	REV__ENSG00000125434|ENST00000577745|SLC25A35	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	622.3089377959001	2	622.308938	1242.60332	0.28441	0.00017699	-5.8834	-0.0036613	-5.599	-0.0034843	622.305437854019	32.103	0.16893	32.099	32.027	32.196	-0.0037575	1152	64	0.92775106	0.038552344	0.9262317	375.72073	0	15.612946						161	8	2	NaN	NaN	NaN	0.62619	1	16850	16850		4.4131	1.8136	1	16180	+		33101	9394	19131	19655	26418	26418					-0.008274869822798792
YYLTDNLTF	9	Unmodified	_YYLTDNLTF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.2767720002499	2	575.276772	1148.53899	0.82955	0.00047722	1.1177	0.000643	1.9473	0.0011202	575.2765200046146	30.269	0.14475	30.263	30.214	30.359	-0.0064106	1197	55	0.9001988	0.033093095	0.8986794	364.89047	0	13.414093						161	7	2	NaN	NaN	NaN	0.13602	1	14255	14255		30.61	15.147	1	23825			33102	5743	19132	19656	26419	26419					-0.029336868591144594
YYLTDNLTF	9	Unmodified						0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	575.276772	1148.53899	1.6676	0.00095935	1.6683	0.00095971	3.3359	0.0019191	575.2763415933969	30.27	0.14479	30.27	30.246	30.391	0	1200	70	0.89836043	0.042292476	0.89836043	364.14526		17.143036	0.0036863	0.00032523	-0.00015948	NaN	30.61	228	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22190			33103	5743	19132	19656							-0.029336868591144594
YYLTDVDRI	9	Unmodified	_YYLTDVDRI_					0	0	0		ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	579.2954960696501	2	579.295496	1156.57644	1.8229	0.001056	3.5638	0.0020645	5.3867	0.0031205	579.2986467440153	23.537	0.33764	23.524	23.379	23.717	-0.01305	1185	49	0.90755045	0.02940017	0.906031	367.84006	0	11.916199						263	15	3	NaN	NaN	NaN	0.2345	1	14539	14539		23.118	5.0831	1	31946			33104	1015	19133	19657	26420	26420					0.004414044065242706
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	571.7976746178501	2	571.797675	1141.5808	2.3891	0.0013661	-1.3114	-0.00074987	1.0777	0.00061624	571.7968474471855	25.708	0.41023	25.708	25.636	26.046	0	1167	112	0.91857195	0.06796235	0.91857195	372.36484	0	27.55014						438	18	4	NaN	NaN	NaN	1.433E-07	1	14523	14523		136.23	83.473	1	168440			33105	1332	19134	19658	26421	26421					0.0156691362010406
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU	ENSG00000101464|ENST00000217446|PIGU	ENSG00000101464|ENST00000217446|PIGU	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	571.7976746178501	2	571.797675	1141.5808	2.0132	0.0011511	-0.59478	-0.00034009	1.4184	0.00081105	571.7973514071267	25.732	0.26546	25.721	25.672	25.938	-0.0116	1167	130	0.91857195	0.079025984	0.9170525	372.36484	0	32.035034						323	12	3	NaN	NaN	NaN	0.014943	1	14045	14045		78.398	39.48	1	161390			33106	1332	19134	19658	26422	26422					0.0156691362010406
YYLWPAVQL	9	Unmodified	_YYLWPAVQL_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	576.8080423389001	2	576.808042	1151.60153	1.4588	0.00084145	-1.3442	-0.00077536	0.11457	6.6087E-05	576.8071523161981	34.734	0.12053	34.734	34.686	34.806	0	1170	58	0.91673553	0.034899533	0.91673553	371.58182	0	14.145905						184	6	3	NaN	NaN	NaN	0.13477	1	14867	14867		30.791	19.621	1	19041			33107	1996	19135	19659	26423	26423					0.03179503999763256
YYLWPAVQL	9	Unmodified	_YYLWPAVQL_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	576.8080423389001	2	576.808042	1151.60153	1.1475	0.00066189	-0.83747	-0.00048306	0.31004	0.00017883	576.8075937880732	34.733	0.14458	34.732	34.684	34.828	-0.0006485	1164	55	0.9204082	0.033053815	0.91888875	373.07047	0	13.397736						215	7	3	NaN	NaN	NaN	0.034898	1	14362	14362		53.324	40.754	1	23020			33108	1996	19135	19659	26424	26424					0.03179503999763256
YYLYSGYKQE	10	Unmodified	_YYLYSGYKQE_					0	0	0		nc|ENSG00000164100|O95803-2|NDST3;nc|ENSG00000164100|O95803-3|NDST3;NDST3|p.I621Sfs*97|1|0.24|ENSG00000164100|chr4:118233051-118233051|C/-|frameshift_variant;ENSG00000164100|ENST00000296499|NDST3	nc|ENSG00000164100|O95803-2|NDST3	nc|ENSG00000164100|O95803-2|NDST3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	438.53979932616676	3	438.539799	1312.59757	1.5849	0.00069506	-7.7949	-0.0034184	-6.2099	-0.0027233	438.5355706522185	23.175	0.096548	23.162	23.138	23.234	-0.013294	1431	34	0.75620437	0.020393908	0.7546849	459.09866	0	12.381317						93	5	3	NaN	NaN	NaN	0.75017	1	18151	18151		4.6175	2.9369	1	7265			33109	4294	19136	19660	26425	26425					-0.04622630284598017
YYMDQAESF	9	Unmodified	_YYMDQAESF_					0	0	0			REV__ENSG00000137502|ENST00000527633|RAB30	REV__ENSG00000137502|ENST00000527633|RAB30	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	385.1550685074667	3	385.155069	1152.44338	2.5353	0.00097649	0.98266	0.00037848	3.518	0.001355	385.15666113057887	28.556	0.024143	28.547	28.547	28.572	-0.0083504	1458	31	0.7395112	0.018559039	0.73799175	449.61227	0	11.28363						30	2	2	NaN	NaN	NaN	0.66196	1	14374	14374		1.1768	0.13678	1	1851.5	+		33110	9686	19137	19661	26426	26426					-0.12674783041643423
YYMDYLAAL	9	Unmodified	_YYMDYLAAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1122.5176099424	1	1122.51761	1121.51033	1.7557	0.0019708	-0.29358	-0.00032955	1.4621	0.0016413	1123.5198442999358	32.804	0.19306	32.804	32.732	32.925	0	60	109	1.582944	0.06360507	1.582944	320.9139	0	12.894806						398	9	3	NaN	NaN	NaN	0.29681	1	13733	13733		19.118	2.7017	1	43594			33111	2492	19138	19662	26427	26427					-0.04556127759883566
YYMDYLAAL	9	Unmodified	_YYMDYLAAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	561.7624432045001	2	561.762443	1121.51033	1.0985	0.00061711	-0.79065	-0.00044416	0.30788	0.00017296	561.761481854748	32.827	0.1206	32.824	32.776	32.896	-0.0031052	1185	58	0.90755045	0.034922183	0.906031	367.9756	0	14.159546						129	6	3	NaN	NaN	NaN	0.47587	1	13330	13330		10.605	2.3147	1	11579			33112	2492	19138	19662	26428	26428					-0.04556127759883566
YYMDYLAAL	9	Unmodified	_YYMDYLAAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.5176099424	1	1122.51761	1121.51033	1.0773	0.0012092	0.21862	0.0002454	1.2959	0.0014546	1122.5178415460243	32.827	0.048256	32.824	32.776	32.824	-0.0031052	60	94	1.582944	0.054762244	1.5814246	320.9139	0	11.102081						176	3	3	NaN	NaN	NaN	0.29681	1	13331	13331		19.118	2.7017	1	18720			33113	2492	19138	19662	26429	26429					-0.04556127759883566
YYMDYLAAL	9	Unmodified	_YYMDYLAAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1122.5176099424	1	1122.51761	1121.51033	1.1903	0.0013361	1.4247	0.0015992	2.6149	0.0029353	1122.5177678910218	32.875	0.072376	32.872	32.872	32.945	-0.0031052	60	76	1.582944	0.04415381	1.5814246	320.9139	0	8.9513855						117	4	2	NaN	NaN	NaN	0.29681	1	13332	13332		19.118	2.7017	1	11561			33114	2492	19138	19662	26430	26430					-0.04556127759883566
YYMDYLAAL	9	Unmodified						0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	561.762443	1121.51033	1.2613	0.00070856	-2.2599	-0.0012695	-0.99853	-0.00056094	561.7602483287204	32.804	0.12061	32.804	32.78	32.9	0	1188	46	0.90571284	0.027567148	0.90571284	367.2305		11.177399	-0.0099893	-0.00095756	-0.00015909	NaN	10.605	119	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10318			33115	2492	19138	19662							-0.04556127759883566
YYMDYLAAL	9	Oxidation (M)	_YYM(Oxidation (M))DYLAAL_		YYM(1)DYLAAL		YYM(47)DYLAAL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1138.5125245645	1	1138.51252	1137.50525	2.2561	0.0025686	1.3846	0.0015763	3.6407	0.0041449	1138.514764184177	29.522	0.12073	29.522	29.474	29.594	0	63	106	1.5811787	0.061841488	1.5811787	320.50116	0	12.535126						274	6	3	NaN	NaN	NaN	0.049695	1	14362	14362		47.04	29.07	1	25509			33116	2492	19138	19663	26431	26431		289			-0.05800431622492397
YYMELTKLLL	10	Oxidation (M)	_YYM(Oxidation (M))ELTKLLL_		YYM(1)ELTKLLL		YYM(47)ELTKLLL	0	0	1		ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.8543322170001	2	651.854332	1301.69411	0.782	0.00050975	-3.3162	-0.0021617	-2.5342	-0.0016519	652.3541726818588	28.99	0.14479	28.982	28.958	29.103	-0.0077229	1083	46	0.9699114	0.027463317	0.96839195	392.59882	0	11.116547						143	7	3	NaN	NaN	NaN	0.095478	1	17977	17977		46.588	33.125	1	13169			33117	2694	19139	19664	26432	26432		310			0.055332209509742825
YYMIGEQKF	9	Unmodified	_YYMIGEQKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.7811672739	2	589.781167	1177.54778	1.768	0.0010427	-1.5204	-0.00089669	0.24762	0.00014604	589.7807552486948	22.356	0.16875	22.356	22.284	22.453	0	1200	73	0.89836043	0.04410982	0.89836043	364.03885	0	17.87445						194	8	5	NaN	NaN	NaN	0.012495	1	15737	15737		85.344	48.758	1	59474			33118	4505	19140	19665	26433	26433					-0.033890364942863016
YYMIGEQKF	9	Unmodified	_YYMIGEQKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7811672739	2	589.781167	1177.54778	1.1063	0.00065246	-0.96575	-0.00056958	0.14053	8.2882E-05	589.7810374456766	22.356	0.24077	22.342	22.27	22.511	-0.013731	1200	58	0.89836043	0.034929693	0.896841	364.03885	0	14.154449						383	11	5	NaN	NaN	NaN	0.015029	1	15166	15166		78.289	48.691	1	86315			33119	4505	19140	19665	26434	26434					-0.033890364942863016
YYMIGEQKF	9	Unmodified	_YYMIGEQKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.7811672739	2	589.781167	1177.54778	0.88664	0.00052293	2.1924	0.0012931	3.0791	0.001816	590.28447191425	29.376	0.19305	29.368	29.272	29.465	-0.0077229	1194	82	0.902037	0.04962623	0.9005176	365.5287	0	20.109863						156	9	2	NaN	NaN	NaN	0.49672	1	15167	15167		9.746	0.13435	1	16274			33120	4505	19140	19665	26435	26435					-0.033890364942863016
YYMIGEQKF	9	Unmodified						0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	589.781167	1177.54778	1.315	0.00077558	0.60943	0.00035943	1.9245	0.001135	590.2837796228717	29.329	0.14477	29.329	29.305	29.449	0	1200	67	0.89836043	0.040451527	0.89836043	364.03882		16.391998	-0.019867	-0.00098149	-0.0010786	NaN	9.746	162	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17092			33121	4505	19140	19665							-0.033890364942863016
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(64)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	597.77862458495	2	597.778625	1193.5427	1.3876	0.00082945	-1.6274	-0.00097285	-0.23988	-0.00014339	597.7777743218448	20.333	0.16825	20.333	20.285	20.453	0	1197	73	0.9001988	0.044119358	0.9001988	364.7272	0	17.87555						462	8	5	NaN	NaN	NaN	0.026469	1	16251	16251		63.731	36.434	1	110260			33122	4505	19140	19666	26436	26436		477			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(110)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	597.77862458495	2	597.778625	1193.5427	1.1897	0.00071116	-1.3449	-0.00080397	-0.15526	-9.2811E-05	597.7782604781343	20.357	0.31287	20.343	20.222	20.535	-0.014141	1197	67	0.9001988	0.040451527	0.8986794	364.7272	0	16.389465						512	14	5	NaN	NaN	NaN	0.0028258	1	15627	15627		108.53	78.933	1	111870			33123	4505	19140	19666	26437	26437		477			-0.046333403568951326
YYMKDLPTSF	10	Unmodified	_YYMKDLPTSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	632.7995569923	2	632.799557	1263.58456	1.5677	0.00099205	-1.9529	-0.0012358	-0.38516	-0.00024373	632.7988051619776	24.502	0.24113	24.502	24.454	24.695	0	1080	121	0.9717421	0.07333422	0.9717421	393.4644	0	29.693481						630	11	4	NaN	NaN	NaN	0.0011471	1	18075	18075		88.822	43.657	1	114030			33124	6074	19141	19667	26438	26438					-0.03668784668366243
YYMKDLPTSF	10	Unmodified	_YYMKDLPTSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	632.7995569923	2	632.799557	1263.58456	1.4564	0.00092162	-1.4019	-0.00088713	0.054511	3.4495E-05	632.7987506770149	24.502	0.12065	24.489	24.465	24.586	-0.012747	1083	124	0.9699114	0.07517165	0.96839195	392.7231	0	30.43747						470	6	3	NaN	NaN	NaN	0.00039182	1	17282	17282		91.973	48.978	1	94828			33125	6074	19141	19667	26439	26439					-0.03668784668366243
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(80)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.79701430335	2	640.797014	1279.57948	1.9036	0.0012198	-2.7234	-0.0017452	-0.81987	-0.00052537	640.7949177609432	21.344	0.19256	21.344	21.296	21.488	0	1158	79	0.92408	0.047703207	0.92408	374.11514	0	19.312744						540	9	4	NaN	NaN	NaN	0.0037187	1	18411	18411		80.241	51.345	1	110190			33126	6074	19141	19668	26440	26440		614			-0.04913088530997811
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(56)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	640.79701430335	2	640.797014	1279.57948	2.0515	0.0013146	-2.3133	-0.0014824	-0.26182	-0.00016778	640.7957075714332	21.344	0.24068	21.33	21.282	21.523	-0.014006	1158	76	0.92408	0.0458709	0.9225606	374.11514	0	18.570923						591	11	5	NaN	NaN	NaN	0.037492	1	17592	17592		56.466	23.04	1	108960			33127	6074	19141	19668	26441	26441		614			-0.04913088530997811
YYMPHTEYT	9	Unmodified	_YYMPHTEYT_					0	0	0			REV__ENSG00000144410|ENST00000272852|CPO	REV__ENSG00000144410|ENST00000272852|CPO	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	602.7526067997001	2	602.752607	1203.49066	0.85513	0.00051543	2.9437	0.0017744	3.7989	0.0022898	602.7541942176255	36.035	0.19281	36.036	35.988	36.181	0.0011024	1182	58	0.9093879	0.034914613	0.90786844	368.41544	0	14.144775						269	8	3	NaN	NaN	NaN	0.49672	1	15917	15917		9.746	0.78402	1	41608	+		33128	9897	19142	19669	26442	26442					-0.10294503770637675
YYMTPRDFLF	10	Unmodified	_YYMTPRDFLF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	676.8208237506501	2	676.820824	1351.62709	1.583	0.0010714	-0.65449	-0.00044298	0.92851	0.00062843	676.8212368387105	29.956	0.19304	29.956	29.86	30.053	0	1092	49	0.9644182	0.029302001	0.9644182	390.2238	0	11.856232						255	9	4	NaN	NaN	NaN	0.28195	1	19562	19562		28.495	16.756	1	23668			33129	4406	19143	19670	26443	26443					-0.03465389540110664
YYMTPRDFLF	10	Unmodified	_YYMTPRDFLF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	676.8208237506501	2	676.820824	1351.62709	0.77901	0.00052725	-1.4554	-0.00098502	-0.67636	-0.00045777	676.8196201366604	29.979	0.21717	29.973	29.901	30.118	-0.0064087	1089	46	0.96624947	0.027466238	0.96473	390.96475	0	11.113434						232	10	3	NaN	NaN	NaN	0.38087	1	18684	18684		24.393	14.033	1	22267			33130	4406	19143	19670	26444	26444					-0.03465389540110664
YYNGKWEFL	9	Unmodified	_YYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	610.2927564154501	2	610.292756	1218.57096	1.7326	0.0010574	-2.3344	-0.0014247	-0.60182	-0.00036729	610.2910323555105	26.07	0.096571	26.07	26.022	26.119	0	1146	73	0.93142134	0.04405272	0.93142134	377.28882	0	17.84433						306	5	4	NaN	NaN	NaN	0.028569	1	16944	16944		60.984	36.583	1	72985			33131	3495	19144	19671	26445	26445					-0.029582743852870408
YYNGKWEFL	9	Unmodified	_YYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	610.2927564154501	2	610.292756	1218.57096	1.6221	0.00098995	-1.0492	-0.00064032	0.57288	0.00034962	610.2916671450085	26.094	0.14482	26.083	25.987	26.131	-0.011137	1143	88	0.9332562	0.053239048	0.93173677	378.03207	0	21.56543						328	7	4	NaN	NaN	NaN	0.097143	1	16264	16264		36.235	9.5033	1	72877			33132	3495	19144	19671	26446	26446					-0.029582743852870408
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	560.7873068968001	2	560.787307	1119.56006	1.4252	0.00079926	-4.6068	-0.0025834	-3.1816	-0.0017842	560.7850292249888	20.309	0.24074	20.295	20.198	20.439	-0.014141	1209	85	0.892844	0.051505983	0.8913246	362.02036	0	20.884064						311	11	3	NaN	NaN	NaN	0.03618	1	13252	13252		52.78	27.819	1	39676			33133	1635	19145	19672	26447	26447					0.005063232404381779
YYNKVSTVF	9	Unmodified						0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	560.787307	1119.56006	1.6283	0.00091315	-4.184	-0.0023463	-2.5556	-0.0014332	560.7859547526821	20.285	0.21636	20.285	20.213	20.429	0	1209	79	0.892844	0.047816634	0.892844	362.02036		19.388153	-0.0048841	0.00023461	0.00075972	NaN	52.78	355	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41938			33134	1635	19145	19672							0.005063232404381779
YYNKVSTVFW	10	Unmodified	_YYNKVSTVFW_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	653.8269633735501	2	653.826963	1305.63937	1.6347	0.0010688	-3.9601	-0.0025892	-2.3253	-0.0015204	653.8248208726733	25.371	0.14478	25.371	25.346	25.491	0	1110	55	0.95342636	0.032986104	0.95342636	385.9138	0	13.351654						195	7	3	NaN	NaN	NaN	0.31689	1	18867	18867		27.046	17.3	1	35944			33135	1635	19146	19673	26448	26448					-0.0012202980542497244
YYNKVSTVFW	10	Unmodified	_YYNKVSTVFW_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	653.8269633735501	2	653.826963	1305.63937	1.2832	0.00083902	-3.4564	-0.0022599	-2.1732	-0.0014209	653.8241190750954	25.394	0.14477	25.382	25.334	25.479	-0.012011	1110	61	0.95342636	0.036655188	0.9519069	385.9138	0	14.836761						246	7	3	NaN	NaN	NaN	0.1159	1	18033	18033		43.776	18.815	1	36845			33136	1635	19146	19673	26449	26449					-0.0012202980542497244
YYNPHLLLNTL	11	Unmodified	_YYNPHLLLNTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	680.8666198503001	2	680.86662	1359.71869	1.4376	0.0009788	-2.0407	-0.0013894	-0.60311	-0.00041064	680.8652126695865	27.036	0.14482	27.036	26.988	27.133	0	1020	94	1.0083145	0.056678057	1.0083145	407.96054	0	22.931732						305	7	4	NaN	NaN	NaN	6.0621E-36	1	19681	19681		167.71	122.55	1	57368			33137	5923	19147	19674	26450	26450					0.05321617148729274
YYNPHLLLNTL	11	Unmodified	_YYNPHLLLNTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	680.8666198503001	2	680.86662	1359.71869	1.1334	0.00077169	-1.942	-0.0013222	-0.80858	-0.00055054	680.8653825075874	27.06	0.16893	27.049	27.025	27.194	-0.010126	1020	88	1.0083145	0.05301571	1.006795	407.96054	0	21.449951						285	8	5	NaN	NaN	NaN	0.01741	1	18780	18780		63.765	37.964	1	47977			33138	5923	19147	19674	26451	26451					0.05321617148729274
YYNQEWTLW	9	Unmodified	_YYNQEWTLW_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	651.7931205562	2	651.793121	1301.57169	1.0891	0.00070989	-0.88794	-0.00057875	0.2012	0.00013114	651.792390197202	32.201	0.19303	32.201	32.128	32.321	0	1158	67	0.92408	0.040368617	0.92408	374.04764	0	16.340332						282	9	3	NaN	NaN	NaN	0.21451	1	18802	18802		27.789	15.74	1	27948			33139	2684	19148	19675	26452	26452					-0.0670347973623393
YYNQEWTLW	9	Unmodified	_YYNQEWTLW_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	651.7931205562	2	651.793121	1301.57169	0.43129	0.00028111	-0.0081102	-5.2862E-06	0.42318	0.00027583	651.7937378530971	32.2	0.19302	32.196	32.099	32.292	-0.0037613	1158	73	0.92408	0.044033706	0.9225606	374.04764	0	17.823883						242	9	2	NaN	NaN	NaN	0.13196	1	17970	17970		42.318	21.804	1	28576			33140	2684	19148	19675	26453	26453					-0.0670347973623393
YYNYSIIGTFT	11	Unmodified	_YYNYSIIGTFT_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	447.88356603563335	3	447.883566	1340.62887	1.2616	0.00056505	7.157	0.0032055	8.4186	0.0037705	447.88681318916883	19.708	0.072041	19.708	19.684	19.756	0	1368	34	0.7950918	0.020347536	0.7950918	482.6025	0	12.350494						100	4	4	NaN	NaN	NaN	0.73455	1	19416	19416		3.5945	1.7443	1	9930.7			33141	4482	19149	19676	26454	26454					-0.02782057250510661
YYNYSIIGTFT	11	Unmodified						0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		3	447.883566	1340.62887	1.349	0.00060418	8.0345	0.0035985	9.3834	0.0042027	447.8868935588328	19.755	0.096292	19.741	19.717	19.813	-0.014141	1371	34	0.79324204	0.020347536	0.7917226	481.47974		12.350494	0.016478	0.00062589	-0.0016846	NaN	3.5945	108	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8681.1			33142	4482	19149	19676							-0.02782057250510661
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	534.2922250992001	2	534.292225	1066.5699	1.7609	0.00094081	-2.9404	-0.001571	-1.1795	-0.00063021	534.2903030971125	20.983	0.14436	20.983	20.959	21.103	0	1245	43	0.87076044	0.025783658	0.87076044	353.27945	0	10.460754						235	7	4	NaN	NaN	NaN	0.25548	1	11415	11415		21.771	6.5957	1	50319			33143	2599	19150	19677	26455	26455					0.039275112458199146
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	534.2922250992001	2	534.292225	1066.5699	0.71511	0.00038208	0.25475	0.00013611	0.96986	0.00051819	534.2925192056844	21.007	0.19258	20.993	20.969	21.162	-0.014086	1245	61	0.87076044	0.036821842	0.869241	353.27942	0	14.939117						234	9	4	NaN	NaN	NaN	0.25548	1	11149	11149		21.771	5.1869	1	55361			33144	2599	19150	19677	26456	26456					0.039275112458199146
YYPDHIKGLIL	11	Unmodified	_YYPDHIKGLIL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	666.3715380527002	2	666.371538	1330.72852	1.554	0.0010356	-0.80988	-0.00053968	0.74416	0.00049589	666.872198724044	23.971	0.12063	23.971	23.923	24.044	0	1071	37	0.977233	0.021962345	0.977233	395.47177	0	8.887817						141	6	4	NaN	NaN	NaN	0.60894	1	19271	19271		13.949	11.349	1	11601			33145	3214	19151	19678	26457	26457					0.07638805154101647
YYPDLAII	8	Unmodified	_YYPDLAII_					0	0	0			REV__SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	REV__SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	967.5135108425001	1	967.513511	966.506234	0.60967	0.00058987	-4.6956	-0.004543	-4.0859	-0.0039532	967.5084154878789	33.551	0.072422	33.549	33.525	33.597	-0.0018463	273	67	1.4571344	0.03913033	1.4556149	295.98383	0	7.9484253						111	4	2	NaN	NaN	NaN	0.8439	1	7373	7373		3.1533	0	1	8365.6	+		33146	10907	19152	19679	26458	26458					0.021641508087100192
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.7951319289001	2	591.795132	1181.57571	1.9552	0.0011571	1.35	0.0007989	3.3052	0.001956	591.7950745575185	26.36	0.28961	26.36	26.312	26.601	0	1161	82	0.9222442	0.04957807	0.9222442	373.70242	0	20.089539						483	13	4	NaN	NaN	NaN	0.094712	1	15879	15879		36.586	5.0254	1	102810			33147	1188	19153	19680	26459	26459					-0.00781390242514135
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	591.7951319289001	2	591.795132	1181.57571	1.3259	0.00078468	0.71031	0.00042036	2.0362	0.001205	591.7954566875902	26.384	0.31366	26.373	26.3	26.614	-0.011137	1158	79	0.92408	0.04774952	0.9225606	374.44632	0	19.348602						542	14	4	NaN	NaN	NaN	0.078597	1	15285	15285		38.918	11.129	1	109930			33148	1188	19153	19680	26460	26460					-0.00781390242514135
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	589.28185737815	2	589.281857	1176.54916	1.0522	0.00062004	-2.8143	-0.0016584	-1.7621	-0.0010384	589.2797610996449	33.142	0.21719	33.142	33.094	33.311	0	1200	64	0.89836043	0.038602352	0.89836043	364.04242	0	15.642822						249	10	2	NaN	NaN	NaN	0.35794	1	15693	15693		15.463	9.0327	1	48286			33149	1369	19154	19681	26461	26461					-0.032050791338633644
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	589.28185737815	2	589.281857	1176.54916	0.71975	0.00042413	-2.2049	-0.0012993	-1.4851	-0.00087515	589.2808003929157	33.14	0.21712	33.138	33.09	33.307	-0.0024757	1200	76	0.89836043	0.04595518	0.896841	364.04242	0	18.622406						269	10	2	NaN	NaN	NaN	0.25448	1	15123	15123		21.835	10.287	1	47586			33150	1369	19154	19681	26462	26462					-0.032050791338633644
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	618.32098253865	2	618.320983	1234.62741	2.0303	0.0012554	-2.0702	-0.0012801	-0.039891	-2.4665E-05	618.3198373871736	28.122	0.38608	28.122	27.953	28.339	0	1149	94	0.92958635	0.056879938	0.92958635	376.49066	0	23.036896						1170	17	6	NaN	NaN	NaN	0.0052656	1	17395	17395		102.05	67.592	1	880490			33151	4038	19155	19682	26463	26463					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	618.32098253865	2	618.320983	1234.62741	1.4031	0.00086757	-1.6552	-0.0010234	-0.25206	-0.00015585	618.3201441241927	28.145	0.33785	28.137	28.016	28.354	-0.0089798	1146	121	0.93142134	0.07338166	0.9299019	377.2339	0	29.720215						1000	15	4	NaN	NaN	NaN	0.064504	1	16668	16668		40.957	16.395	1	859370			33152	4038	19155	19682	26464	26464					0.019483534513710765
YYPKTNALYF	10	Unmodified	_YYPKTNALYF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	640.3215138549001	2	640.321514	1278.62847	2.0324	0.0013014	-2.1272	-0.0013621	-0.094817	-6.0713E-05	640.320462987395	23.562	0.33747	23.562	23.393	23.73	0	1122	61	0.9460945	0.03666711	0.9460945	383.0308	0	14.844849						334	15	4	NaN	NaN	NaN	0.47025	1	18391	18391		20.688	4.271	1	33017			33153	515	19156	19683	26465	26465					0.00030567820294891135
YYPKTNALYF	10	Unmodified						0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	640.321514	1278.62847	2.2696	0.0014532	-2.0762	-0.0013294	0.1934	0.00012384	640.8215623675718	23.537	0.28933	23.524	23.452	23.741	-0.01305	1119	52	0.9479278	0.031161964	0.94640833	383.77298		12.616089	-0.018753	2.408E-05	0.00015691	NaN	20.688	262	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33647			33154	515	19156	19683							0.00030567820294891135
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.29476778815	2	538.294768	1074.57498	2.0043	0.0010789	-1.9161	-0.0010314	0.088205	4.748E-05	538.2937349063724	29.908	0.16892	29.908	29.836	30.004	0	1221	94	0.885486	0.05708927	0.885486	359.21967	0	23.159668						396	8	3	NaN	NaN	NaN	0.12945	1	11754	11754		31.561	22.438	1	52739			33155	5111	19157	19684	26466	26466					0.040678151084193814
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1075.5822591096999	1	1075.58226	1074.57498	1.7761	0.0019103	-0.97222	-0.0010457	0.80384	0.00086459	1075.5814439211904	29.908	0.14477	29.908	29.86	30.004	0	90	61	1.5652816	0.035347342	1.5652816	317.50168	0	7.169861						272	7	4	NaN	NaN	NaN	0.04947	1	11755	11755		47.136	26.58	1	29179			33156	5111	19157	19684	26467	26467					0.040678151084193814
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1075.5822591096999	1	1075.58226	1074.57498	1.2854	0.0013825	-0.9177	-0.00098706	0.3677	0.00039549	1075.5819223229491	29.907	0.14477	29.9	29.852	29.996	-0.0070667	87	61	1.5670487	0.035339832	1.5655292	317.86014	0	7.1683655						232	7	3	NaN	NaN	NaN	0.018156	1	11449	11449		74.332	47.6	1	24396			33157	5111	19157	19684	26468	26468					0.040678151084193814
YYPSFLPYF	9	Unmodified	_YYPSFLPYF_					0	0	0		ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF	ENSG00000146083|ENST00000274811|RNF44	ENSG00000146083|ENST00000274811|RNF44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.78677558055	2	598.786776	1195.559	1.0661	0.00063835	0.20452	0.00012246	1.2706	0.00076081	599.2891405854058	36.254	0.072338	36.254	36.229	36.302	0	1179	70	0.9112251	0.04224682	0.9112251	369.1875	0	17.116516						219	4	4	NaN	NaN	NaN	0.24994	1	16323	16323		22.126	6.6637	1	19286			33158	3548	19158	19685	26469	26469					-0.030958911284869828
YYPSFLPYF	9	Unmodified	_YYPSFLPYF_					0	0	0		ENSG00000146083|ENST00000274811|RNF44;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF	ENSG00000146083|ENST00000274811|RNF44	ENSG00000146083|ENST00000274811|RNF44	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	598.78677558055	2	598.786776	1195.559	1.1216	0.00067163	1.4896	0.00089193	2.6112	0.0015636	598.7870529386009	36.252	0.16858	36.253	36.229	36.397	0.0011024	1173	76	0.91489893	0.045915484	0.9133795	370.67596	0	18.602905						278	8	3	NaN	NaN	NaN	0.14945	1	15684	15684		28.667	12.082	1	22050			33159	3548	19158	19685	26470	26470					-0.030958911284869828
YYPSTPGRYSI	11	Unmodified	_YYPSTPGRYSI_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	652.3195024822002	2	652.319502	1302.62445	1.6613	0.0010837	-1.6625	-0.0010845	-0.0011987	-7.8191E-07	652.3190360610668	19.924	0.19238	19.924	19.876	20.069	0	1116	55	0.94976085	0.03300035	0.94976085	384.43942	0	13.357727						303	9	4	NaN	NaN	NaN	0.58035	1	18821	18821		15.311	1.8479	1	40809			33160	2992	19159	19686	26471	26471					-0.01475521673410185
YYPSTPGRYSI	11	Unmodified	_YYPSTPGRYSI_					0	0	0		nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-7|FLNB	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	652.3195024822002	2	652.319502	1302.62445	1.0479	0.00068354	-0.47761	-0.00031156	0.57025	0.00037199	652.319159097626	19.948	0.1685	19.934	19.861	20.03	-0.014141	1119	55	0.9479278	0.033003926	0.94640833	383.69742	0	13.359161						217	8	3	NaN	NaN	NaN	0.29515	1	17989	17989		25.801	2.4665	1	35040			33161	2992	19159	19686	26472	26472					-0.01475521673410185
YYPVMLTL	8	Unmodified	_YYPVMLTL_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	500.26462175270007	2	500.264622	998.514691	1.1333	0.00056695	-0.067121	-3.3578E-05	1.0662	0.00053338	500.2645861976789	21.344	0.19236	21.33	21.21	21.402	-0.014006	1311	67	0.83019954	0.04061365	0.8286801	337.11578	0	16.491821						177	9	3	NaN	NaN	NaN	0.81214	1	8343	8343		7.5902	1.8961	1	18768	+		33162	8413	19160	19687	26473	26473					0.015373814536928876
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	636.32098253865	2	636.320983	1270.62741	1.6987	0.0010809	-3.7239	-0.0023696	-2.0252	-0.0012887	636.3201261991472	24.888	0.19307	24.888	24.816	25.009	0	1116	85	0.94976085	0.051300764	0.94976085	384.541	0	20.770752						257	9	3	NaN	NaN	NaN	0.23112	1	18244	18244		23.334	8.9094	1	36404			33163	3869	19161	19688	26474	26474					0.0029235345136839896
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	636.32098253865	2	636.320983	1270.62741	1.611	0.0010251	-3.208	-0.0020413	-1.5971	-0.0010162	636.3192232643678	24.888	0.21719	24.875	24.851	25.068	-0.012394	1113	82	0.9515937	0.049487233	0.95007426	385.28308	0	20.036499						257	10	3	NaN	NaN	NaN	0.049695	1	17432	17432		47.04	26.485	1	31740			33164	3869	19161	19688	26475	26475					0.0029235345136839896
YYQDTPKQI	9	Unmodified	_YYQDTPKQI_					0	0	0		ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	ENSG00000048162|ENST00000614830|NOP16	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.28767103755	2	578.287671	1154.56079	2.0808	0.0012033	-1.8584	-0.0010747	0.22236	0.00012859	578.2864674449906	16.011	0.21559	15.999	15.903	16.118	-0.012611	1212	58	0.8910048	0.034952402	0.88948536	361.1414	0	14.16687						316	10	3	NaN	NaN	NaN	0.033694	1	14469	14469		69.363	34.924	1	41944			33165	557	19162	19689	26476	26476					-0.010308821105354582
YYQEMQHM	8	Unmodified	_YYQEMQHM_					0	0	0			REV__CON__Q9TT36	REV__CON__Q9TT36	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	565.2257019449501	2	565.225702	1128.43685	0.558	0.0003154	4.8384	0.0027348	5.3964	0.0030502	565.7299857092651	31.789	0.14482	31.785	31.761	31.906	-0.0044174	1236	64	0.876284	0.038644075	0.8747646	355.2718	0	15.66748						149	7	4	NaN	NaN	NaN	0.81251	1	13569	13569		7.5404	0.74637	1	13450	+	+	33166	8290	19163	19690	26477	26477					-0.12222999474010976
YYQFDYGSCD	10	Unmodified	_YYQFDYGSCD_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	630.72932866865	2	630.729329	1259.4441	1.8748	0.0011825	-4.1995	-0.0026488	-2.3248	-0.0014663	631.2277959139201	17.429	0.1679	17.429	17.357	17.525	0	1188	58	0.90571284	0.034918368	0.90571284	366.74176	0	14.139191						194	8	3	NaN	NaN	NaN	0.62764	1	17976	17976		13.003	1.4544	1	12078	+		33167	13049	19164	19691	26478	26478					-0.1752398839257694
YYQFDYGSCD	10	Unmodified	_YYQFDYGSCD_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	630.72932866865	2	630.729329	1259.4441	1.6973	0.0010705	-5.4367	-0.0034291	-3.7394	-0.0023586	631.226182557641	17.426	0.16802	17.412	17.364	17.532	-0.013567	1182	64	0.9093879	0.038594007	0.90786844	368.22986	0	15.627502						171	8	3	NaN	NaN	NaN	0.73444	1	17204	17204		5.6942	2.1244	1	12118	+		33168	13049	19164	19691	26479	26479					-0.1752398839257694
YYQFDYGSCD	10	Unmodified						0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	630.729329	1259.4441	1.8748	0.0011825	-4.1995	-0.0026488	-2.3248	-0.0014663	631.2277959139201	17.429	0.1679	17.429	17.357	17.525	0	1188	58	0.90571284	0.034918368	0.90571284	366.74176		14.139191	0.0084725	0.00102	-0.0010778	NaN	13.003	194	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12078	+		33169	13049	19164	19691							-0.1752398839257694
YYQFDYGSCD	10	Unmodified						0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|100|1|anti-sense	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	630.729329	1259.4441	1.6973	0.0010705	-5.4367	-0.0034291	-3.7394	-0.0023586	631.226182557641	17.426	0.16802	17.412	17.364	17.532	-0.013567	1182	64	0.9093879	0.038594007	0.90786844	368.22986		15.627502	-0.0084725	-0.00054063	0.0010778	NaN	13.003	171	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12118	+		33170	13049	19164	19691							-0.1752398839257694
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	569.3005814475501	2	569.300581	1136.58661	1.8549	0.001056	-1.0051	-0.00057218	0.84987	0.00048383	569.3002515	20.79	0.096369	20.79	20.766	20.862	0	1179	73	0.9112251	0.04410982	0.9112251	369.40598	0	17.881927						417	5	4	NaN	NaN	NaN	0.017558	1	14344	14344		75.089	34.132	1	248220			33171	2056	19165	19692	26480	26480					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	569.3005814475501	2	569.300581	1136.58661	1.1645	0.00066297	-0.44868	-0.00025543	0.71585	0.00040753	569.3006432016657	20.815	0.14447	20.801	20.752	20.897	-0.014088	1182	100	0.9093879	0.06068057	0.90786844	368.6612	0	24.59961						498	7	5	NaN	NaN	NaN	0.0073225	1	13874	13874		97.85	45.07	1	255260			33172	2056	19165	19692	26481	26481					0.023780121317713565
YYQNFNLIEWK	11	Unmodified	_YYQNFNLIEWK_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-2|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-2|ACSBG2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	759.37480902315	2	759.374809	1516.73507	1.2201	0.00092655	4.4048	0.0033449	5.625	0.0042715	759.3777108347753	32.803	0.14476	32.8	32.751	32.896	-0.0031052	984	70	1.03022	0.041956425	1.0287007	416.38892	0	16.957733						263	7	4	NaN	NaN	NaN	0.64656	1	19610	19610		10.965	2.6876	1	30215	+		33173	9483	19166	19693	26482	26482					-0.0026330168520871666
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.30332110175	2	634.303321	1266.59209	1.5129	0.00095961	-1.7993	-0.0011413	-0.28645	-0.0001817	634.3010000859477	24.791	0.096537	24.791	24.743	24.84	0	1104	43	0.9570911	0.025655925	0.9570911	387.52216	0	10.387939						112	5	3	NaN	NaN	NaN	0.064504	1	18144	18144		40.957	14.842	1	10961			33174	4513	19167	19694	26483	26483					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	634.30332110175	2	634.303321	1266.59209	2.5153	0.0015954	-0.12885	-8.1729E-05	2.3864	0.0015137	634.3038574492214	23.296	0.36163	23.296	23.248	23.61	0	1098	106	0.960755	0.06416392	0.960755	389.00565	0	25.979706						901	16	5	NaN	NaN	NaN	1.7723E-07	1	18145	18145		134.97	96.842	1	529360			33175	4513	19167	19694	26484	26484					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.30332110175	2	634.303321	1266.59209	1.5554	0.00098658	-2.4972	-0.001584	-0.94188	-0.00059744	634.301397919115	24.84	0.096489	24.827	24.803	24.9	-0.012392	1107	49	0.9552588	0.029324174	0.9537394	386.78027	0	11.8732605						110	5	3	NaN	NaN	NaN	0.12866	1	17336	17336		31.675	13.706	1	9726.9			33176	4513	19167	19694	26485	26485					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	634.30332110175	2	634.303321	1266.59209	2.5229	0.0016003	0.59055	0.00037459	3.1134	0.0019749	634.3041209133648	23.32	0.41018	23.307	23.21	23.62	-0.013296	1095	106	0.9625867	0.06416392	0.96106726	389.74728	0	25.979736						885	18	4	NaN	NaN	NaN	1.1649E-05	1	17339	17339		128.29	80.813	1	502580			33177	4513	19167	19694	26486	26486					-0.030543090764240333
YYQNYFEKL	9	Unmodified						0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	634.303321	1266.59209	1.9887	0.0012614	-1.5607	-0.00098996	0.42797	0.00027146	634.3020093225825	23.706	0.072227	23.693	23.693	23.765	-0.013048	1107	55	0.9552588	0.032996833	0.9537394	386.78027		13.360291	0.19825	-0.0015213	-0.0035078	NaN	134.97	88	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7421			33178	4513	19167	19694							-0.030543090764240333
YYQSNYVFVF	10	Unmodified	_YYQSNYVFVF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	665.31114613385	2	665.311146	1328.60774	1.3131	0.00087362	1.07	0.0007119	2.3831	0.0015855	665.3092301546727	32.537	0.16896	32.534	32.486	32.655	-0.0031052	1068	43	0.97906286	0.025622725	0.9775434	396.21878	0	10.369293						158	8	3	NaN	NaN	NaN	0.60686	1	18380	18380		14.425	9.696	1	12434			33179	7769	19168	19695	26487	26487					-0.043420225593990835
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	575.7743964868001	2	575.774396	1149.53424	2.1968	0.0012649	-1.5278	-0.00087969	0.669	0.00038519	575.7741946728949	23.272	0.28936	23.272	23.176	23.465	0	1215	106	0.8891654	0.06434423	0.8891654	360.41443	0	26.08133						634	13	4	NaN	NaN	NaN	0.097143	1	14778	14778		36.235	11.673	1	104010			33180	4346	19169	19696	26488	26488					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-3|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-3|DNAAF5	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	575.7743964868001	2	575.774396	1149.53424	1.7908	0.0010311	-1.5759	-0.00090737	0.21487	0.00012371	575.7745513213578	23.272	0.24128	23.258	23.186	23.427	-0.013294	1218	109	0.8873258	0.06618625	0.8858064	359.66876	0	26.827942						579	11	4	NaN	NaN	NaN	0.026295	1	14276	14276		63.958	37.843	1	102230			33181	4346	19169	19696	26489	26489					-0.03454571001839213
YYQTPRLWLF	10	Unmodified	_YYQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	693.8638801961	2	693.86388	1385.71321	0.67129	0.00046578	-0.57001	-0.00039551	0.10127	7.027E-05	694.3649418284763	31.332	0.24132	31.332	31.235	31.477	0	1059	76	0.98455137	0.04572779	0.98455137	398.27087	0	18.497803						373	11	5	NaN	NaN	NaN	0.52943	1	19939	19939		18.233	5.1323	1	33712			33182	3496	19170	19697	26490	26490					0.035779383568751655
YYQTPRLWLF	10	Unmodified	_YYQTPRLWLF_					0	0	0		ENST00000467275.1_1_3:112256557-112257010:-|nuORF;nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	ENST00000467275.1_1_3:112256557-112257010:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	693.8638801961	2	693.86388	1385.71321	0.62023	0.00043036	0.23968	0.00016631	0.85992	0.00059667	694.3652678917489	31.355	0.16889	31.35	31.302	31.47	-0.0050716	1056	73	0.9863805	0.04389155	0.9848611	399.0108	0	17.755035						454	8	5	NaN	NaN	NaN	0.38087	1	19015	19015		24.393	8.5715	1	39302			33183	3496	19170	19697	26491	26491					0.035779383568751655
YYRDARSYNRF	11	Unmodified	_YYRDARSYNRF_					0	0	0		ENST00000493673.1_1_1:151373717-151374107:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	504.2443797928	3	504.24438	1509.71131	1.9809	0.00099883	-2.2529	-0.001136	-0.27203	-0.00013717	504.5783371932218	14.117	0.072032	14.117	14.069	14.141	0	1368	25	0.7950918	0.01479578	0.7950918	482.05142	0	8.970459						49	4	2	NaN	NaN	NaN	0.77686	1	20615	20615		0.7918	0.23483	1	3714.9			33184	4025	19171	19698	26492	26492					-0.023157223990210696
YYRGNYMTF	9	Unmodified	_YYRGNYMTF_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	607.7685912149001	2	607.768591	1213.52263	0.87962	0.00053461	-0.22526	-0.00013691	0.65436	0.0003977	607.7678436331836	21.296	0.14428	21.282	21.234	21.378	-0.014006	1176	58	0.9130621	0.034903347	0.91154265	369.8693	0	14.1388855						197	7	3	NaN	NaN	NaN	0.53317	1	16144	16144		8.2448	3.3351	1	19134			33185	5895	19172	19699	26493	26493					-0.0755909129684369
YYRIIIPV	8	Unmodified	_YYRIIIPV_					0	0	0		nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8131277168001	2	518.813128	1035.6117	1.785	0.00092606	-8.1961	-0.0042523	-6.4112	-0.0033262	518.8092955727129	36.302	0.24109	36.302	36.229	36.471	0	1215	76	0.8891654	0.045980036	0.8891654	360.88403	0	18.661835						560	11	5	NaN	NaN	NaN	0.76633	1	10037	10037		13.737	2.1886	1	188120			33186	484	19173	19700	26494	26494					0.09532111724979586
YYRIIIPV	8	Unmodified	_YYRIIIPV_					0	0	0		nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	518.8131277168001	2	518.813128	1035.6117	1.7018	0.00088291	-7.3027	-0.0037887	-5.6009	-0.0029058	518.809626440208	36.541	0.40931	36.543	36.374	36.783	0.0016785	1215	76	0.8891654	0.045980036	0.88764596	360.88403	0	18.661835						762	18	5	NaN	NaN	NaN	0.76633	1	9831	9831		13.737	2.1886	1	208480			33187	484	19173	19700	26495	26495					0.09532111724979586
YYRIIIPV	8	Unmodified						0	0	0		nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	nc|ENSG00000028116|Q86Y07-3|VRK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	518.813128	1035.6117	1.9601	0.0010169	-8.6439	-0.0044846	-6.6838	-0.0034676	518.8091055130204	36.324	0.12052	36.325	36.205	36.325	0.0011024	1227	31	0.88180584	0.018402934	0.8802864	357.89703		7.4691772	0.011741	-0.00043272	-0.0044395	NaN	13.737	69	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4342.5			33188	484	19173	19700							0.09532111724979586
YYRIPIVL	8	Unmodified	_YYRIPIVL_					0	0	0			REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8131277168001	2	518.813128	1035.6117	1.4316	0.00074274	-8.1165	-0.004211	-6.6849	-0.0034682	518.8091606752839	35.699	0.28936	35.699	35.627	35.916	0	1233	82	0.87812483	0.04967457	0.87812483	356.403	0	20.161316						449	13	5	NaN	NaN	NaN	0.80071	1	10036	10036		9.1232	0	1	144150	+		33189	9442	19174	19701	26496	26496					0.09532111724979586
YYRIPIVL	8	Unmodified	_YYRIPIVL_					0	0	0			REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	518.8131277168001	2	518.813128	1035.6117	1.0099	0.00052395	-7.1024	-0.0036848	-6.0925	-0.0031609	518.8094066251525	35.458	0.14471	35.458	35.41	35.554	0	1227	70	0.88180584	0.042329073	0.88180584	357.897	0	17.180023						265	7	4	NaN	NaN	NaN	0.80071	1	10038	10038		9.1232	2.873	1	42969	+		33190	9442	19174	19701	26497	26497					0.09532111724979586
YYRKFFYG	8	Unmodified	_YYRKFFYG_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	572.2847344181001	2	572.284734	1142.55492	0.82011	0.00046934	7.5306	0.0043097	8.3508	0.004779	572.288948623908	27.904	0.21724	27.895	27.822	28.039	-0.009552	1053	115	0.9882094	0.06944263	0.98669	400.5899	0	28.149933						434	10	3	NaN	NaN	NaN	0.84876	1	14066	14066		0.39566	0.065779	1	46248			33191	2123	19175	19702	26498	26498					-0.010659358315251666
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	637.8558581987502	2	637.855858	1273.69716	1.942	0.0012387	-4.4249	-0.0028225	-2.4829	-0.0015838	637.8529114064046	26.601	0.21723	26.601	26.529	26.746	0	1104	88	0.9570911	0.05312431	0.9570911	387.49884	0	21.508514						530	10	4	NaN	NaN	NaN	0.17818	1	18297	18297		26.732	12.69	1	82526			33192	2674	19176	19703	26499	26499					0.07126276910662455
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	425.57299762136677	3	425.572998	1273.69716	1.6545	0.0007041	-2.2576	-0.00096078	-0.60314	-0.00025668	425.5717821261653	26.577	0.19309	26.577	26.529	26.722	0	1407	109	0.77102906	0.066740155	0.77102906	468.2475	0	40.531433						593	9	4	NaN	NaN	NaN	0.062072	1	18298	18298		30.035	22.746	1	103540			33193	2674	19176	19703	26500	26500					0.07126276910662455
YYRPRFFLL	9	Unmodified	_YYRPRFFLL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	425.57299762136677	3	425.572998	1273.69716	1.2182	0.00051844	-0.47721	-0.00020309	0.741	0.00031535	425.57315795357715	27.735	0.09651	27.726	27.726	27.822	-0.009552	1404	34	0.77288127	0.020371795	0.7713618	469.3723	0	12.371857						64	5	2	NaN	NaN	NaN	0.39244	1	17490	17490		8.9191	3.6344	1	4479.4			33194	2674	19176	19703	26501	26501					0.07126276910662455
YYRRRHRHERT	11	Unmodified	_YYRRRHRHERT_					0	0	0		ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18	ENST00000507405.5_1_5:138755893-138773164:-|nuORF	ENST00000507405.5_1_5:138755893-138773164:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	815.4327125658501	2	815.432713	1628.85087	1.5936	0.0012994	-2.5713	-0.0020967	-0.9777	-0.00079725	815.9314297242112	32.73	0.072395	32.727	32.679	32.751	-0.0031052	903	34	1.0794045	0.020005822	1.077885	435.99637	0	8.080811						62	4	2	NaN	NaN	NaN	0.77843	1	19751	19751		0.51604	0.07021	1	5261.1			33195	4729	19177	19704	26502	26502					0.061600797288747344
YYRWHQER	8	Unmodified	_YYRWHQER_					0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	619.2966960879	2	619.296696	1236.57884	1.1338	0.00070213	7.9937	0.0049504	9.1274	0.0056526	619.3018602000526	28.822	0.096542	28.822	28.798	28.894	0	975	58	1.0356921	0.034659743	1.0356921	419.45706	0	14.037231						107	5	2	NaN	NaN	NaN	0.84887	1	17441	17441		0.32989	0.054495	1	6969.3	+		33196	10668	19178	19705	26503	26503					-0.029987023451667483
YYRWHQER	8	Unmodified						0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	619.296696	1236.57884	1.1338	0.00070213	7.9937	0.0049504	9.1274	0.0056526	619.3018602000526	28.822	0.096542	28.822	28.798	28.894	0	975	58	1.0356921	0.034659743	1.0356921	419.45706		14.037231	-0.019576	0.0013203	-0.0019754	NaN	0.32989	107	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6969.3	+		33197	10668	19178	19705							-0.029987023451667483
YYRWHQER	8	Unmodified						0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	619.296696	1236.57884	0.87768	0.00054354	6.1211	0.0037908	6.9988	0.0043343	619.8022054574969	28.869	0.12069	28.861	28.813	28.933	-0.0083504	966	61	1.0411623	0.036477923	1.0396428	421.67252		14.773651	0.019576	-0.00099902	0.0019754	NaN	0.32989	112	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6894.8	+		33198	10668	19178	19705							-0.029987023451667483
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	621.7987372503501	2	621.798737	1241.58292	1.6248	0.0010103	-1.007	-0.00062616	0.61776	0.00038412	621.7986434422304	17.141	0.12004	17.141	17.117	17.237	0	1152	61	0.92775106	0.03672248	0.92775106	375.7241	0	14.872009						204	6	4	NaN	NaN	NaN	0.0049332	1	17563	17563		77.761	57.312	1	27018			33199	3364	19179	19706	26504	26504					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	414.86825032243337	3	414.86825	1241.58292	1.7926	0.00074369	-1.0731	-0.00044518	0.71952	0.00029851	414.86776831066817	17.141	0.16801	17.141	17.117	17.285	0	1398	55	0.77658504	0.03333026	0.77658504	471.75226	0	20.247131						215	8	3	NaN	NaN	NaN	0.13684	1	17564	17564		28.236	19.317	1	41309			33200	3364	19179	19706	26505	26505					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	414.86825032243337	3	414.86825	1241.58292	1.5047	0.00062425	-1.0179	-0.00042228	0.48682	0.00020197	414.8678624194812	17.234	0.23981	17.22	17.172	17.412	-0.013569	1401	64	0.77473325	0.038900077	0.7732138	470.62735	0	23.630615						340	11	3	NaN	NaN	NaN	0.26393	1	16816	16816		19.904	12.1	1	50546			33201	3364	19179	19706	26506	26506					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	621.7987372503501	2	621.798737	1241.58292	1.2129	0.00075415	-0.53158	-0.00033053	0.68127	0.00042362	621.798374669111	17.258	0.19186	17.244	17.172	17.364	-0.013567	1155	49	0.92591566	0.02937162	0.9243962	374.98077	0	11.89505						230	9	3	NaN	NaN	NaN	0.02603	1	16817	16817		61.199	39.428	1	29036			33202	3364	19179	19706	26507	26507					-0.028206576420870988
YYSIISHTL	9	Unmodified	_YYSIISHTL_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	548.7873068968001	2	548.787307	1095.56006	1.7393	0.00095451	-3.761	-0.002064	-2.0216	-0.0011095	548.7847634731218	23.2	0.072304	23.2	23.176	23.248	0	1194	37	0.902037	0.02205491	0.902037	365.84528	0	8.944977						92	4	3	NaN	NaN	NaN	0.17818	1	12651	12651		26.732	4.6052	1	10629			33203	554	19180	19707	26508	26508					0.01610323240447542
YYSKGYFLR	9	Unmodified	_YYSKGYFLR_					0	0	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.8085736551501	2	598.808574	1195.60259	1.1608	0.00069507	-10.144	-0.0060741	-8.9829	-0.0053791	598.801760350724	24.767	0.072397	24.767	24.743	24.816	0	1206	79	0.894683	0.047780514	0.894683	362.4853	0	19.35852						133	4	2	NaN	NaN	NaN	0.51576	1	16332	16332		8.962	0.71716	1	17964	+		33204	10858	19181	19708	26509	26509					0.01261718368664333
YYSKGYFLR	9	Unmodified						0	0	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	598.808574	1195.60259	1.1608	0.00069507	-10.144	-0.0060741	-8.9829	-0.0053791	598.801760350724	24.767	0.072397	24.767	24.743	24.816	0	1206	79	0.894683	0.047780514	0.894683	362.4853		19.35852	0	0	0	NaN	8.962	133	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17964	+		33205	10858	19181	19708							0.01261718368664333
YYSKSVGFMQW	11	Unmodified	_YYSKSVGFMQW_					0	0	0		nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	698.3237305803501	2	698.323731	1394.63291	1.6111	0.0011251	-3.2073	-0.0022397	-1.5962	-0.0011146	698.3218713310249	25.636	0.19299	25.636	25.564	25.757	0	1074	49	0.9754029	0.029283106	0.9754029	394.5452	0	11.844849						195	9	3	NaN	NaN	NaN	0.14916	1	20017	20017		35.056	15.893	1	19284			33206	5580	19182	19709	26510	26510					-0.04862291028439358
YYSKSVGFMQW	11	Unmodified	_YYSKSVGFMQW_					0	0	0		nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	698.3237305803501	2	698.323731	1394.63291	1.5515	0.0010835	-1.4808	-0.0010341	0.070707	4.9376E-05	698.8237132265272	25.66	0.0965	25.648	25.624	25.721	-0.011602	1074	43	0.9754029	0.025622725	0.97388345	394.5452	0	10.364258						100	5	2	NaN	NaN	NaN	0.43809	1	19080	19080		20.688	10.083	1	15498			33207	5580	19182	19709	26511	26511					-0.04862291028439358
YYSKSVGFMQW	11	Oxidation (M)	_YYSKSVGFM(Oxidation (M))QW_		YYSKSVGFM(1)QW		YYSKSVGFM(83)QW	0	0	1		nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	706.3211878914001	2	706.321188	1410.62782	1.3472	0.00095157	-1.5291	-0.00108	-0.18187	-0.00012846	706.3197035760182	21.85	0.14458	21.85	21.802	21.946	0	1062	52	0.9827221	0.031104922	0.9827221	397.46152	0	12.580383						217	7	4	NaN	NaN	NaN	0.00018674	1	20150	20150		82.991	62.478	1	19927			33208	5580	19182	19710	26512	26512		571			-0.06106594891070927
YYSKSVGFMQW	11	Oxidation (M)	_YYSKSVGFM(Oxidation (M))QW_		YYSKSVGFM(1)QW		YYSKSVGFM(140)QW	0	0	1		nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	706.3211878914001	2	706.321188	1410.62782	1.0075	0.00071162	-0.58915	-0.00041613	0.41835	0.00029549	706.3206376078311	21.85	0.19267	21.836	21.788	21.98	-0.013895	1065	55	0.9808926	0.032936394	0.97937316	396.7216	0	13.321106						259	9	4	NaN	NaN	NaN	2.8531E-18	1	19198	19198		136.64	110.84	1	22587			33209	5580	19182	19710	26513	26513		571			-0.06106594891070927
YYSPDGALCDV	11	Unmodified	_YYSPDGALCDV_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.7553464539001	2	601.755346	1201.49614	1.1944	0.00071875	3.9163	0.0023566	5.1107	0.0030754	601.7577087226604	35.866	0.096355	35.867	35.843	35.94	0.0011024	1170	43	0.91673553	0.02571404	0.9152161	371.39914	0	10.417603						50	5	2	NaN	NaN	NaN	0.73455	1	15860	15860		5.1889	0.77579	1	3943.1			33210	44	19183	19711	26514	26514					-0.09654824978815668
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	433.5679122434667	3	433.567912	1297.68191	1.1829	0.00051289	-2.165	-0.00093868	-0.98207	-0.0004258	433.56723596497636	21.272	0.2648	21.272	21.224	21.488	0	1392	64	0.780288	0.03886217	0.780288	473.77664	0	23.596375						280	12	3	NaN	NaN	NaN	0.75405	1	18736	18736		3.9087	0	1	46784			33211	3498	19184	19712	26515	26515					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	649.8482301319001	2	649.84823	1297.68191	1.4286	0.00092839	0.069865	4.5402E-05	1.4985	0.00097379	649.8484136528039	21.272	0.16846	21.272	21.224	21.392	0	1053	37	0.9882094	0.02194339	0.9882094	400.0184	0	8.882507						173	8	4	NaN	NaN	NaN	0.14916	1	18737	18737		47.482	37.121	1	24078			33212	3498	19184	19712	26516	26516					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	433.5679122434667	3	433.567912	1297.68191	1.1984	0.0005196	-1.4793	-0.00064138	-0.28087	-0.00012178	433.56706716799954	21.513	0.289	21.499	21.378	21.667	-0.014006	1392	55	0.780288	0.033315837	0.77876854	473.77664	0	20.22876						372	13	4	NaN	NaN	NaN	0.59348	1	17899	17899		14.45	7.642	1	43645			33213	3498	19184	19712	26517	26517					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	649.8482301319001	2	649.84823	1297.68191	1.3345	0.00086723	-0.95784	-0.00062245	0.37668	0.00024478	650.3484286715842	21.489	0.21691	21.475	21.378	21.595	-0.014006	1056	40	0.9863805	0.023778379	0.9848611	399.27808	0	9.625305						192	10	4	NaN	NaN	NaN	0.073935	1	17900	17900		66.656	51.194	1	18650			33214	3498	19184	19712	26518	26518					0.04497365322799851
YYSTAVDIW	9	Unmodified	_YYSTAVDIW_					0	0	0		ENSG00000123374|ENST00000266970|CDK2;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000554619.5_1_12:56361683-56363594:+|nuORF	ENSG00000123374|ENST00000266970|CDK2	ENSG00000123374|ENST00000266970|CDK2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1117.5200527834	1	1117.52005	1116.51278	1.8954	0.0021181	1.0028	0.0011207	2.8982	0.0032388	1117.5205089752335	28.822	0.12067	28.822	28.798	28.918	0	72	43	1.5758814	0.024727464	1.5758814	319.49945	0	5.0133057						110	6	3	NaN	NaN	NaN	0.094712	1	13520	13520		36.586	23.584	1	6734.2			33215	2373	19185	19713	26519	26519					-0.040819560305635605
YYSTAVDIW	9	Unmodified						0	0	0		ENSG00000123374|ENST00000266970|CDK2;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000554619.5_1_12:56361683-56363594:+|nuORF	ENSG00000123374|ENST00000266970|CDK2	ENSG00000123374|ENST00000266970|CDK2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		1	1117.52005	1116.51278	1.4705	0.0016433	-1.5397	-0.0017206	-0.069183	-7.7313E-05	1118.522167582683	28.821	0.096521	28.813	28.789	28.885	-0.0083504	72	55	1.5758814	0.031799078	1.5743619	319.49945		6.4470825	-0.0045493	-0.001597	-0.00075972	NaN	36.586	85	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6173.6			33216	2373	19185	19713							-0.040819560305635605
YYTDFLITL	9	Unmodified	_YYTDFLITL_					0	0	0		ENST00000462731.1_1_7:94229956-94232691:-|nuORF;ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	ENST00000462731.1_1_7:94229956-94232691:-|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	574.7973402668501	2	574.79734	1147.58013	0.9774	0.00056181	-1.2531	-0.0007203	-0.27574	-0.0001585	574.796182281046	35.866	0.14455	35.867	35.819	35.964	0.0011024	1176	43	0.9130621	0.025719583	0.91154265	370.10822	0	10.425415						98	7	3	NaN	NaN	NaN	0.094712	1	14230	14230		36.586	25.621	1	8701.2			33217	2553	19186	19714	26520	26520					0.01224074180390744
YYTDIMHTL	9	Unmodified	_YYTDIMHTL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	578.7707995528501	2	578.7708	1155.52705	1.988	0.0011506	2.5732	0.0014893	4.5611	0.0026399	579.2748091746679	25.153	0.28951	25.153	25.081	25.371	0	1188	115	0.90571284	0.0698784	0.90571284	367.09918	0	28.322754						449	13	4	NaN	NaN	NaN	0.043119	1	14999	14999		49.833	28.062	1	61535			33218	5642	19187	19715	26521	26521					-0.044496268739294464
YYTDIMHTL	9	Unmodified	_YYTDIMHTL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	578.7707995528501	2	578.7708	1155.52705	1.7206	0.00099584	3.5502	0.0020547	5.2708	0.0030506	579.2741615080083	25.177	0.19297	25.165	25.093	25.286	-0.012011	1185	124	0.90755045	0.07536656	0.906031	367.844	0	30.547241						482	9	4	NaN	NaN	NaN	0.043119	1	14498	14498		49.833	30.669	1	65571			33219	5642	19187	19715	26522	26522					-0.044496268739294464
YYTDIMHTL	9	Unmodified						0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	578.7708	1155.52705	1.8434	0.0010669	9.2324	0.0053434	11.076	0.0064104	578.7759290997991	25.491	0.12064	25.479	25.382	25.503	-0.012011	1185	85	0.90755045	0.051489294	0.906031	367.84396		20.869415	0.16275	0.0054116	0.00015909	NaN	49.833	129	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17867			33220	5642	19187	19715							-0.044496268739294464
YYTEFPTVL	9	Unmodified	_YYTEFPTVL_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	566.7816902026501	2	566.78169	1131.54883	1.4139	0.00080139	-1.7656	-0.0010007	-0.3517	-0.00019934	567.2820853579002	30.656	0.21723	30.656	30.608	30.825	0	1224	43	0.883646	0.025764108	0.883646	358.2447	0	10.44519						211	10	4	NaN	NaN	NaN	0.17818	1	14142	14142		26.732	9.8733	1	42398			33221	2578	19188	19716	26523	26523					-0.011684988537126628
YYTEFPTVL	9	Unmodified	_YYTEFPTVL_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1132.5561039387	1	1132.5561	1131.54883	1.8154	0.0020561	-0.68604	-0.00077697	1.1294	0.0012791	1132.555801248714	30.656	0.16895	30.656	30.608	30.777	0	57	79	1.5847093	0.045912623	1.5847093	321.2371	0	9.306976						279	8	4	NaN	NaN	NaN	0.0040938	1	14143	14143		104.71	59.546	1	34410			33222	2578	19188	19716	26524	26524					-0.011684988537126628
YYTEFPTVL	9	Unmodified	_YYTEFPTVL_					0	0	0		ENSG00000128708|ENST00000264108|HAT1;ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1	ENSG00000128708|ENST00000264108|HAT1	ENSG00000128708|ENST00000264108|HAT1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1132.5561039387	1	1132.5561	1131.54883	0.79905	0.00090496	1.4938	0.0016918	2.2929	0.0025968	1132.5582921193143	30.655	0.21715	30.649	30.601	30.818	-0.0057545	57	73	1.5847093	0.04238093	1.5831898	321.2371	0	8.591064						274	10	3	NaN	NaN	NaN	0.0023856	1	13697	13697		109.86	62.376	1	32195			33223	2578	19188	19716	26525	26525					-0.011684988537126628
YYTFDCLYRGA	11	Unmodified	_YYTFDCLYRGA_					0	0	0			REV__nc|ENSG00000130517|Q9NXJ5-2|PGPEP1	REV__nc|ENSG00000130517|Q9NXJ5-2|PGPEP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	686.3055378272	2	686.305538	1370.59652	2.143	0.0014707	-3.937	-0.002702	-1.794	-0.0012313	686.3029877308223	25.346	0.31369	25.334	25.286	25.6	-0.012011	1074	88	0.9754029	0.05306703	0.97388345	394.61313	0	21.469055						667	14	4	NaN	NaN	NaN	0.47586	1	18874	18874		19.336	0	1	132600	+		33224	9487	19189	19717	26526	26526					-0.0739516792516497
YYTFHFLYF	9	Unmodified	_YYTFHFLYF_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	650.8054996499501	2	650.8055	1299.59645	1.085	0.00070613	-1.5189	-0.00098852	-0.43391	-0.00028239	650.8047349296942	32.997	0.24134	32.997	32.949	33.19	0	1104	73	0.9570911	0.043967307	0.9570911	387.416	0	17.797302						283	11	3	NaN	NaN	NaN	0.03623	1	18769	18769		52.758	32.31	1	58796			33225	1763	19190	19718	26527	26527					-0.04136799862862972
YYTFHFLYF	9	Unmodified	_YYTFHFLYF_					0	0	0		ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	ENSG00000110429|ENST00000265651|FBXO3	ENSG00000110429|ENST00000265651|FBXO3	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	650.8054996499501	2	650.8055	1299.59645	0.75521	0.0004915	-1.5754	-0.0010253	-0.82015	-0.00053376	650.8040978496929	33.068	0.2653	33.066	32.993	33.259	-0.0024796	1101	70	0.95892316	0.042142153	0.9574037	388.15756	0	17.058502						247	12	2	NaN	NaN	NaN	0.056143	1	17940	17940		44.302	33.132	1	54492			33226	1763	19190	19718	26528	26528					-0.04136799862862972
YYTGTQGLIF	10	Unmodified	_YYTGTQGLIF_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1162.5779020133	1	1162.5779	1161.57063	2.4344	0.0028302	-2.2836	-0.0026549	0.15075	0.00017525	1162.577556189049	29.305	0.12065	29.305	29.28	29.401	0	69	55	1.5776473	0.031789064	1.5776473	319.70587	0	6.441986						147	6	3	NaN	NaN	NaN	0.20888	1	15204	15204		48.65	20.861	1	11588			33227	4414	19191	19719	26529	26529					-0.003696941051430258
YYTGTQGLIF	10	Unmodified	_YYTGTQGLIF_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1162.5779020133	1	1162.5779	1161.57063	1.9291	0.0022427	0.60935	0.00070842	2.5384	0.0029511	1162.5780400991755	29.328	0.096533	29.32	29.296	29.393	-0.0077209	69	64	1.5776473	0.037093043	1.5761279	319.70587	0	7.516815						113	5	2	NaN	NaN	NaN	0.17424	1	14689	14689		53.14	26.409	1	10296			33228	4414	19191	19719	26530	26530					-0.003696941051430258
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	538.2947677881501	2	538.294768	1074.57498	2.4159	0.0013005	-0.10978	-5.9096E-05	2.3062	0.0012414	538.2948898709568	25.443	0.24123	25.443	25.395	25.636	0	1227	64	0.88180584	0.038648307	0.88180584	357.72668	0	15.678619						422	11	4	NaN	NaN	NaN	0.013696	1	11757	11757		81.699	48.83	1	237150			33229	3795	19192	19720	26531	26531					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;PLOD2|p.N650Rfs*4|1|0.12|ENSG00000152952|chr3:146071153-146071154|-/TA|frameshift_variant	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	538.2947677881501	2	538.294768	1074.57498	2.0701	0.0011143	0.28078	0.00015114	2.3509	0.0012655	538.2949839115115	25.467	0.28951	25.455	25.407	25.696	-0.012011	1227	61	0.88180584	0.03680587	0.8802864	357.72668	0	14.931213						455	13	5	NaN	NaN	NaN	0.021751	1	11451	11451		69.782	39.747	1	239320			33230	3795	19192	19720	26532	26532					0.04067815108442119
YYTKGFALLNF	11	Unmodified	_YYTKGFALLNF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	668.8504384698501	2	668.850438	1335.68632	1.9244	0.0012871	-5.1089	-0.0034171	-3.1846	-0.00213	668.8462973727333	29.86	0.2655	29.86	29.811	30.077	0	1059	127	0.98455137	0.07690966	0.98455137	398.41824	0	31.123016						533	12	5	NaN	NaN	NaN	2.7378E-07	1	19346	19346		94.587	72.736	1	131970			33231	3795	19193	19721	26533	26533					0.031908297457221124
YYTKGFALLNF	11	Unmodified	_YYTKGFALLNF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	668.8504384698501	2	668.850438	1335.68632	1.3091	0.00087557	-2.5582	-0.001711	-1.2491	-0.00083546	668.8483235534081	29.883	0.26544	29.876	29.803	30.069	-0.0070667	1056	88	0.9863805	0.05307275	0.9848611	399.15842	0	21.47696						448	12	5	NaN	NaN	NaN	0.0099716	1	18477	18477		69.32	43.519	1	117320			33232	3795	19193	19721	26534	26534					0.031908297457221124
YYTKVYQEI	9	Unmodified	_YYTKVYQEI_					0	0	0		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	603.8056966152001	2	603.805697	1205.59684	1.0888	0.00065743	3.449	0.0020826	4.5379	0.00274	603.8076342681991	19.827	0.096281	19.813	19.765	19.861	-0.014141	1170	79	0.91673553	0.047744393	0.9152161	371.3848	0	19.342041						106	5	2	NaN	NaN	NaN	0.37272	1	15964	15964		14.854	0.40445	1	15957			33233	3916	19194	19722	26535	26535					0.002265750663354993
YYTKVYQEI	9	Unmodified						0	0	0		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	603.805697	1205.59684	1.5694	0.00094762	3.7527	0.0022659	5.3221	0.0032135	603.8080215197447	19.804	0.072035	19.804	19.804	19.876	0	1167	73	0.91857195	0.044066966	0.91857195	372.12875		17.852264	-0.0045342	0.00019137	0.0016779	NaN	14.854	111	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18473			33234	3916	19194	19722							0.002265750663354993
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		PTBP3-SUSD1|8|fusion;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;PTBP3-SUSD1|6|fusion;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;PTBP3-SUSD1|7|fusion;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;nc|ENSG00000119314|O95758-5|PTBP3;PTBP3-SUSD1|9|fusion;nc|ENSG00000119314|O95758-4|PTBP3	PTBP3-SUSD1|8|fusion	PTBP3-SUSD1|8|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	552.7898495857501	2	552.78985	1103.56515	1.9126	0.0010572	-2.3961	-0.0013245	-0.48352	-0.00026728	552.7884683672416	23.224	0.24109	23.224	23.152	23.393	0	1164	130	0.9204082	0.07906866	0.9204082	373.26254	0	32.06549						500	11	4	NaN	NaN	NaN	0.020004	1	12996	12996		71.993	50.158	1	137990			33235	2209	19195	19723	26536	26536					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		PTBP3-SUSD1|8|fusion;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;PTBP3-SUSD1|6|fusion;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;PTBP3-SUSD1|7|fusion;nc|ENSG00000119314|O95758|PTBP3;PTBP3-SUSD1|5|fusion;nc|ENSG00000119314|O95758-5|PTBP3;PTBP3-SUSD1|9|fusion;nc|ENSG00000119314|O95758-4|PTBP3	PTBP3-SUSD1|8|fusion	PTBP3-SUSD1|8|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	552.7898495857501	2	552.78985	1103.56515	1.923	0.001063	-2.5434	-0.001406	-0.62039	-0.00034294	552.7882568052485	23.272	0.24128	23.258	23.186	23.427	-0.013294	1164	118	0.9204082	0.07169789	0.91888875	373.26254	0	29.076416						470	11	4	NaN	NaN	NaN	0.020004	1	12648	12648		71.993	38.856	1	137760			33236	2209	19195	19723	26537	26537					0.01750627103047009
YYTRTTMCYAV	11	Unmodified	_YYTRTTMCYAV_					0	0	0			REV__ENSG00000180155|ENST00000652477|LYNX1	REV__ENSG00000180155|ENST00000652477|LYNX1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	686.3072232364001	2	686.307223	1370.59989	2.4412	0.0016754	-7.3181	-0.0050224	-4.8769	-0.003347	686.3019654467605	25.322	0.28956	25.322	25.202	25.491	0	1074	100	0.9754029	0.060386717	0.9754029	394.61313	0	24.430298						607	13	4	NaN	NaN	NaN	0.25335	1	19800	19800		27.296	2.7342	1	130610	+		33237	10823	19196	19724	26538	26538					-0.07058241142817678
YYTRTTMCYAV	11	Unmodified						0	0	0			REV__ENSG00000180155|ENST00000652477|LYNX1	REV__ENSG00000180155|ENST00000652477|LYNX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	686.307223	1370.59989	2.4412	0.0016754	-7.3181	-0.0050224	-4.8769	-0.003347	686.3019654467605	25.322	0.28956	25.322	25.202	25.491	0	1074	100	0.9754029	0.060386717	0.9754029	394.61313		24.430298	-0.0059139	-0.000404	0.00075972	NaN	27.296	607	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130610	+		33238	10823	19196	19724							-0.07058241142817678
YYTRTTMCYAV	11	Unmodified						0	0	0			REV__ENSG00000180155|ENST00000652477|LYNX1	REV__ENSG00000180155|ENST00000652477|LYNX1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	686.307223	1370.59989	2.143	0.0014707	-6.3928	-0.0043874	-4.2498	-0.0029167	686.3029877308223	25.346	0.31369	25.334	25.286	25.6	-0.012011	1074	88	0.9754029	0.05306703	0.97388345	394.61313		21.469055	0.0059139	0.00086606	-0.00075972	NaN	27.296	667	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132600	+		33239	10823	19196	19724							-0.07058241142817678
YYTSVTPVL	9	Unmodified	_YYTSVTPVL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1042.5455392524	1	1042.54554	1041.53826	1.641	0.0017108	-11.557	-0.012049	-9.9159	-0.010338	1042.5296321770556	26.36	0.21716	26.349	26.204	26.421	-0.011135	150	97	1.5299006	0.056687713	1.5283811	310.44983	0	11.503174						308	10	3	NaN	NaN	NaN	0.023074	1	10068	10068		68.108	27.955	1	62775			33240	406	19197	19725	26539	26539					0.019155184918645318
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	612.30840647965	2	612.308406	1222.60226	1.1289	0.00069125	-3.1495	-0.0019285	-2.0206	-0.0012372	612.3074856076877	23.803	0.1445	23.803	23.778	23.923	0	1158	73	0.92408	0.04408127	0.92408	374.30127	0	17.855255						211	7	3	NaN	NaN	NaN	0.41766	1	17041	17041		13.003	3.2568	1	25789			33241	1504	19198	19726	26540	26540					-0.00013701351213057933
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.30840647965	2	612.308406	1222.60226	1.1141	0.00068219	-3.6343	-0.0022253	-2.5202	-0.0015431	612.3085242749952	23.826	0.1928	23.813	23.717	23.91	-0.013048	1161	67	0.9222442	0.040403485	0.92072475	373.55768	0	16.36554						248	9	3	NaN	NaN	NaN	0.13602	1	16348	16348		30.61	14.026	1	29930			33242	1504	19198	19726	26541	26541					-0.00013701351213057933
YYVDFFKTL	9	Unmodified	_YYVDFFKTL_					0	0	0		nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	nc|ENSG00000132406|Q5BJH2-2|TMEM128	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	598.3053324744501	2	598.305332	1194.59611	1.4977	0.00089608	4.6584	0.0027871	6.1561	0.0036832	598.3081403285291	29.86	0.072424	29.86	29.836	29.908	0	1155	64	0.92591566	0.038556516	0.92591566	375.1429	0	15.621521						107	4	2	NaN	NaN	NaN	0.040769	1	16299	16299		50.831	27.713	1	45180			33243	2757	19199	19727	26542	26542					0.006597804172997712
YYVFKVVHL	9	Unmodified	_YYVFKVVHL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	389.89021522933336	3	389.890215	1166.64882	1.2921	0.00050378	-2.4724	-0.00096396	-1.1803	-0.00046017	389.88979186305795	23.971	0.072388	23.971	23.947	24.019	0	1392	37	0.780288	0.022212982	0.780288	474.3358	0	13.503235						65	4	2	NaN	NaN	NaN	0.42773	1	15378	15378		11.17	8.2809	1	7785.8			33244	5681	19200	19728	26543	26543					0.07215783270748943
YYVFKVVHL	9	Unmodified	_YYVFKVVHL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	389.89021522933336	3	389.890215	1166.64882	1.5006	0.00058508	-2.3591	-0.0009198	-0.85848	-0.00033471	389.8895737261055	24.164	0.14475	24.151	24.055	24.199	-0.012749	1386	31	0.78399014	0.018508792	0.7824707	476.58633	0	11.251465						102	7	2	NaN	NaN	NaN	0.31766	1	14845	14845		11.17	9.3201	1	9999.7			33245	5681	19200	19728	26544	26544					0.07215783270748943
YYVGETTG	8	Unmodified	_YYVGETTG_					0	0	0			REV__ENSG00000101680|ENST00000389658|LAMA1	REV__ENSG00000101680|ENST00000389658|LAMA1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	889.3937896373	1	889.39379	888.386513	2.3675	0.0021056	-11.604	-0.010321	-9.2365	-0.0082149	889.3832975472479	49.744	0.023956	49.744	49.72	49.744	0	366	31	1.4019053	0.017845154	1.4019053	285.11703	0	3.6293335						30	2	2	NaN	NaN	NaN	0.8439	1	5915	5915		3.1533	0	1	1661.4	+		33246	8864	19201	19729	26545	26545					-0.062144625358541816
YYVLLIIT	8	Unmodified	_YYVLLIIT_					0	0	0		nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9	nc|ENSG00000144550|Q8IYJ1-2|CPNE9	nc|ENSG00000144550|Q8IYJ1-2|CPNE9	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	997.5968465414002	1	997.596847	996.58957	1.5809	0.0015771	-4.6441	-0.0046329	-3.0632	-0.0030558	997.5931225069961	28.194	0.048307	28.185	28.161	28.209	-0.0089779	204	79	1.4979934	0.046161532	1.496474	304.1543	0	9.372681						95	3	2	NaN	NaN	NaN	0.84651	1	8285	8285		1.6704	0.42852	1	6480			33247	3479	19202	19730	26546	26546					0.09113887256569342
YYVLWDDNRF	10	Unmodified	_YYVLWDDNRF_					0	0	0		ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	695.82495200085	2	695.824952	1389.63535	1.1402	0.0007934	0.4507	0.00031361	1.5909	0.001107	695.8248472706631	27.35	0.16897	27.35	27.326	27.495	0	1077	43	0.9735726	0.02562821	0.9735726	393.81876	0	10.366852						167	8	3	NaN	NaN	NaN	0.28195	1	19979	19979		28.495	18.135	1	13606			33248	1102	19203	19731	26547	26547					-0.04388119299164828
YYVLWDDNRF	10	Unmodified						0	0	0		ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	ENSG00000092847|ENST00000373204|AGO1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	695.824952	1389.63535	0.8822	0.00061385	-2.2169	-0.0015426	-1.3347	-0.00092874	695.8211015835055	27.397	0.12066	27.387	27.339	27.46	-0.010126	1077	46	0.9735726	0.027457356	0.9720532	393.81876		11.10672	0.018699	-0.0021313	-0.00075972	NaN	28.495	113	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9637.9			33249	1102	19203	19731							-0.04388119299164828
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	574.7903809020002	2	574.790381	1147.56621	1.6728	0.0009615	-3.6149	-0.0020778	-1.9421	-0.0011163	574.7894113817161	20.069	0.14419	20.069	19.972	20.117	0	1218	43	0.8873258	0.025753021	0.8873258	359.6761	0	10.438934						127	7	3	NaN	NaN	NaN	0.11656	1	14720	14720		33.425	3.827	1	17880			33250	3536	19204	19732	26548	26548					-0.0016715852802917652
YYVNTKYLY	9	Unmodified	_YYVNTKYLY_					0	0	0		tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	613.8082393041501	2	613.808239	1225.60193	1.1621	0.00071329	5.4932	0.0033718	6.6553	0.0040851	613.8120661480577	25.226	0.07242	25.226	25.202	25.274	0	1140	70	0.93509084	0.04220128	0.93509084	378.75085	0	17.093262						96	4	2	NaN	NaN	NaN	0.31737	1	17126	17126		17.799	7.5553	1	14482			33251	13935	19205	19733	26549	26549					-0.0018512107103560993
YYVNTKYLY	9	Unmodified						0	0	0		tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	613.808239	1225.60193	1.9037	0.0011685	-0.42928	-0.00026349	1.4744	0.00090502	613.8091954773927	25.033	0.072386	25.021	24.996	25.069	-0.012011	1152	37	0.92775106	0.022019207	0.9262317	375.77798		8.918732	-0.10263	-0.003696	-0.0044296	NaN	17.799	42	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2741.3			33252	13935	19205	19733							-0.0018512107103560993
YYVPRGFWKQF	11	Unmodified	_YYVPRGFWKQF_					0	0	0		USP9X-BLVRB|1|fusion;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y	USP9X-BLVRB|1|fusion	USP9X-BLVRB|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	745.8826042655	2	745.882604	1489.75066	1.4004	0.0010446	-0.088435	-6.5962E-05	1.312	0.0009786	745.8817318225771	24.598	0.096424	24.598	24.526	24.623	0	954	28	1.0484532	0.016400099	1.0484532	423.8277	0	6.6295776						54	5	3	NaN	NaN	NaN	0.024178	1	20549	20549		69.363	44.963	1	3622.9			33253	2416	19206	19734	26550	26550					0.025370296224991762
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	567.3269335838002	2	567.326934	1132.63931	2.1638	0.0012276	-2.3728	-0.0013462	-0.20904	-0.00011859	567.3255558715906	21.85	0.26499	21.85	21.778	22.043	0	1146	46	0.93142134	0.027525544	0.93142134	377.60922	0	11.15918						356	12	5	NaN	NaN	NaN	0.0052656	1	14203	14203		108.51	81.778	1	104320			33254	576	19207	19735	26551	26551					0.07830014985233902
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	567.3269335838002	2	567.326934	1132.63931	1.1862	0.00067298	-1.2216	-0.00069303	-0.035352	-2.0056E-05	567.3260836010369	22.091	0.31329	22.077	21.932	22.246	-0.013731	1137	64	0.9369253	0.038535774	0.93540585	379.84058	0	15.622833						425	14	4	NaN	NaN	NaN	0.013696	1	13750	13750		96.245	57.328	1	89623			33255	576	19207	19735	26552	26552					0.07830014985233902
YYVRAWVVF	9	Unmodified	_YYVRAWVVF_					0	0	0		DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	601.82148406515	2	601.821484	1201.62842	1.4425	0.00086812	-6.0195	-0.0036227	-4.577	-0.0027546	602.3188053813263	29.112	0.1448	29.112	29.063	29.208	0	1155	76	0.92591566	0.045895696	0.92591566	375.1179	0	18.593811						387	7	3	NaN	NaN	NaN	0.062072	1	16524	16524		41.785	28.782	1	169240			33256	254	19208	19736	26553	26553					0.03566612610916309
YYVRAWVVF	9	Unmodified	_YYVRAWVVF_					0	0	0		DHCR24-PCNXL2|1|fusion;ENSG00000116133|ENST00000371269|DHCR24	DHCR24-PCNXL2|1|fusion	DHCR24-PCNXL2|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	601.82148406515	2	601.821484	1201.62842	1.095	0.00065899	-7.1909	-0.0043276	-6.0959	-0.0036686	602.3183364430648	29.159	0.33789	29.151	29.055	29.393	-0.0077209	1155	82	0.92591566	0.04956734	0.9243962	375.1179	0	20.08133						779	15	5	NaN	NaN	NaN	0.043119	1	15877	15877		49.833	29.32	1	214880			33257	254	19208	19736	26554	26554					0.03566612610916309
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	564.3265992328002	2	564.326599	1126.63865	2.3529	0.0013278	-1.5806	-0.00089198	0.77234	0.00043585	564.3256648812953	25.974	0.12066	25.974	25.926	26.046	0	1179	55	0.9112251	0.03306806	0.9112251	369.44507	0	13.407074						149	6	2	NaN	NaN	NaN	0.010404	1	13978	13978		91.563	67.001	1	40432			33258	422	19209	19737	26555	26555					0.08039175545536636
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	564.3265992328002	2	564.326599	1126.63865	2.0495	0.0011566	-0.95176	-0.0005371	1.0977	0.00061947	564.3258668939732	26.022	0.096552	26.011	25.962	26.059	-0.011135	1176	55	0.9130621	0.03306806	0.91154265	370.18988	0	13.407074						141	5	2	NaN	NaN	NaN	0.024221	1	13532	13532		66.656	46.208	1	34747			33259	422	19209	19737	26556	26556					0.08039175545536636
YYVRKVLEL	9	Unmodified	_YYVRKVLEL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	591.8476988156502	2	591.847699	1181.68084	1.1479	0.00067937	-0.52891	-0.00031304	0.61896	0.00036633	591.8471515921195	20.525	0.096207	20.525	20.501	20.597	0	1128	37	0.9424274	0.022005022	0.9424274	381.88046	0	8.916626						122	5	3	NaN	NaN	NaN	0.2345	1	15894	15894		23.118	12.757	1	12465			33260	66	19210	19738	26557	26557					0.09727150953926866
YYVSSAFTL	9	Unmodified	_YYVSSAFTL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1050.5142391240001	1	1050.51424	1049.50696	2.062	0.0021661	-0.67634	-0.00071051	1.3856	0.0014556	1050.5138346714905	28.798	0.12066	28.798	28.75	28.87	0	111	64	1.5529068	0.037144184	1.5529068	315.08698	0	7.536621						196	6	3	NaN	NaN	NaN	0.056143	1	10607	10607		44.302	11.85	1	19840			33261	3868	19211	19739	26558	26558					-0.015810545422255018
YYVSSAFTL	9	Unmodified	_YYVSSAFTL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1050.5142391240001	1	1050.51424	1049.50696	1.3304	0.0013976	-0.22326	-0.00023453	1.1071	0.0011631	1050.5138019793862	28.797	0.16892	28.789	28.74	28.909	-0.0083504	108	55	1.5546752	0.031832814	1.5531558	315.44577	0	6.4589233						194	8	3	NaN	NaN	NaN	0.056143	1	10386	10386		44.302	25.184	1	19121			33262	3868	19211	19739	26559	26559					-0.015810545422255018
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1;nc|ENSG00000117226|Q9H0R5-4|GBP3	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	432.2311886582	3	432.231189	1293.67174	1.2895	0.00055736	-2.2491	-0.00097213	-0.95961	-0.00041477	432.23061488490276	20.213	0.16827	20.213	20.165	20.333	0	1404	43	0.77288127	0.025929153	0.77288127	469.2947	0	15.744232						184	8	4	NaN	NaN	NaN	0.064658	1	18655	18655		48.319	17.394	1	31777			33263	2134;2133	19212	19740	26560	26560					0.036647575975621294
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1;nc|ENSG00000117226|Q9H0R5-4|GBP3	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	647.843144754	2	647.843145	1293.67174	1.7182	0.0011131	-2.267	-0.0014686	-0.54879	-0.00035553	647.841785333288	20.213	0.16827	20.213	20.165	20.333	0	1089	49	0.96624947	0.029295743	0.96624947	391.142	0	11.859039						183	8	4	NaN	NaN	NaN	0.080496	1	18656	18656		48.65	10.519	1	30770			33264	2134;2133	19212	19740	26561	26561					0.036647575975621294
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1;nc|ENSG00000117226|Q9H0R5-4|GBP3	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	647.843144754	2	647.843145	1293.67174	1.5515	0.0010051	-1.1544	-0.00074785	0.39714	0.00025729	647.842358215446	20.285	0.1926	20.271	20.222	20.415	-0.014141	1089	52	0.96624947	0.031135082	0.96473	391.142	0	12.603638						225	9	4	NaN	NaN	NaN	0.0027333	1	17823	17823		83.529	45.398	1	33363			33265	2134;2133	19212	19740	26562	26562					0.036647575975621294
YYVTELTHRI	10	Unmodified	_YYVTELTHRI_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3	ENSG00000117228|ENST00000370473|GBP1;nc|ENSG00000117226|Q9H0R5-4|GBP3	ENSG00000117228|ENST00000370473|GBP1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	432.2311886582	3	432.231189	1293.67174	1.1204	0.00048429	-0.65718	-0.00028405	0.46325	0.00020023	432.23130615289773	20.285	0.16848	20.271	20.222	20.391	-0.014141	1401	46	0.77473325	0.027779698	0.7732138	470.41922	0	16.86792						216	8	4	NaN	NaN	NaN	0.13684	1	17824	17824		33.567	10.391	1	33368			33266	2134;2133	19212	19740	26563	26563					0.036647575975621294
YYVVLYYGAL	10	Unmodified	_YYVVLYYGAL_					0	0	0			REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	612.3209825386501	2	612.320983	1222.62741	0.87226	0.0005341	6.55	0.0040107	7.4222	0.0045448	612.3250150314248	26.504	0.04825	26.494	26.47	26.518	-0.010645	1131	52	0.94059354	0.031178772	0.93907416	380.99	0	12.629059						87	3	2	NaN	NaN	NaN	0.54036	1	16351	16351		17.78	1.9584	1	44959	+		33267	13314	19213	19741	26564	26564					0.025003534513871273
YYVVLYYGAL	10	Unmodified						0	0	0			REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	612.320983	1222.62741	1.3505	0.00082697	4.9107	0.0030069	6.2613	0.0038339	612.3236229527678	26.481	0.048265	26.481	26.456	26.505	0	1131	52	0.94059354	0.031185508	0.94059354	380.99002		12.631775	-0.0066009	-0.0010994	0.00075972	NaN	17.78	96	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48379	+		33268	13314	19213	19741							0.025003534513871273
YYVVLYYGAL	10	Unmodified						0	0	0			REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	REV__SLC19A1|p.S278L|1|0.38|ENSG00000173638|chr21:45531505-45531505|G/A|missense_variant	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	612.320983	1222.62741	0.87226	0.0005341	6.55	0.0040107	7.4222	0.0045448	612.3250150314248	26.504	0.04825	26.494	26.47	26.518	-0.010645	1131	52	0.94059354	0.031178772	0.93907416	380.99		12.629059	0.0066009	0.00090803	-0.00075972	NaN	17.78	87	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44959	+		33269	13314	19213	19741							0.025003534513871273
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	611.8163986872501	2	611.816399	1221.61824	1.6666	0.0010196	-0.94422	-0.00057769	0.72235	0.00044195	611.8158765043406	26.36	0.21724	26.36	26.288	26.505	0	1143	61	0.9332562	0.036694765	0.9332562	378.02148	0	14.863464						287	10	3	NaN	NaN	NaN	0.026295	1	17021	17021		63.958	37.227	1	140730			33270	302	19214	19742	26565	26565					0.016300048857146976
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	611.8163986872501	2	611.816399	1221.61824	1.2512	0.00076548	-1.7736	-0.0010851	-0.52247	-0.00031966	611.8154528452193	26.384	0.24132	26.373	26.324	26.566	-0.011137	1143	70	0.9332562	0.04220581	0.93173677	378.0215	0	17.095734						303	11	3	NaN	NaN	NaN	0.01452	1	16334	16334		79.199	47.523	1	138790			33271	302	19214	19742	26566	26566					0.016300048857146976
YYYFLFNKIV	10	Unmodified	_YYYFLFNKIV_					0	0	0			REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	685.36318170435	2	685.363182	1368.71181	2.2642	0.0015518	-1.8174	-0.0012456	0.44679	0.00030621	685.3616857690764	26.336	0.048277	26.336	26.312	26.36	0	858	127	1.1066676	0.0763818	1.1066676	447.7243	0	30.901794						247	3	3	NaN	NaN	NaN	0.78133	1	19789	19789		0.19249	0	1	28249	+		33272	13552	19215	19743	26567	26567					0.04220304268119435
YYYFLFNKIV	10	Unmodified						0	0	0			REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1		2	685.363182	1368.71181	2.2642	0.0015518	-1.8174	-0.0012456	0.44679	0.00030621	685.3616857690764	26.336	0.048277	26.336	26.312	26.36	0	858	127	1.1066676	0.0763818	1.1066676	447.7243		30.901794	-0.0063622	-0.0011058	0.00075972	NaN	0.19249	247	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28249	+		33273	13552	19215	19743							0.04220304268119435
YYYFLFNKIV	10	Unmodified						0	0	0			REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	REV__tr|U7SXY6|U7SXY6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00926PE=4SV=1	TIMS-MULTI-MATCH	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2		2	685.363182	1368.71181	1.7282	0.0011844	-0.42774	-0.00029315	1.3004	0.00089128	685.3630798881381	26.36	0.12065	26.349	26.3	26.421	-0.011135	858	118	1.1066676	0.070907	1.1051482	447.72427		28.686798	0.0063622	0.00079895	-0.00075972	NaN	0.19249	315	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28470	+		33274	13552	19215	19743							0.04220304268119435
YYYGDSVEF	9	Unmodified	_YYYGDSVEF_					0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	1142.4676828619	1	1142.46768	1141.46041	2.9672	0.0033899	-0.0089657	-1.0243E-05	2.9582	0.0033796	1142.4677191296214	25.708	0.096481	25.708	25.684	25.781	0	60	46	1.582944	0.026483893	1.582944	320.84567	0	5.3680115						96	5	2	NaN	NaN	NaN	0.049695	1	14493	14493		47.04	29.07	1	8246.3			33275	291	19216	19744	26568	26568					-0.1046653916419018
YYYGDSVEF	9	Unmodified	_YYYGDSVEF_					0	0	0		nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	nc|ENSG00000000971|P08603|CFH	nc|ENSG00000000971|P08603|CFH	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#2	2	1142.4676828619	1	1142.46768	1141.46041	2.6945	0.0030783	0.72393	0.00082707	3.4184	0.0039054	1142.467459578733	25.708	0.12064	25.696	25.672	25.793	-0.0116	60	40	1.582944	0.022950292	1.5814246	320.84567	0	4.651764						96	6	2	NaN	NaN	NaN	0.020004	1	14021	14021		71.993	49.866	1	6981.9			33276	291	19216	19744	26569	26569					-0.1046653916419018
YYYGGQWFLF	10	Unmodified	_YYYGGQWFLF_					0	0	0		ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENST00000455359.5_2_22:35653519-35659991:+|nuORF	TIMS-MULTI-MSMS	211113_SS_malignant_HNSCC_W6-32_20%_DDA_Rep#1	1	672.3084064796501	2	672.308406	1342.60226	1.0908	0.00073338	-2.8388	-0.0019086	-1.748	-0.0011752	672.3049838388649	37.048	0.072151	37.048	37	37.072	0	1107	34	0.9552588	0.020154953	0.9552588	386.544	0	8.15567						82	4	3	NaN	NaN	NaN	0.40641	1	19449	19449		23.334	14.415	1	4836.9			33277	7056	19217	19745	26570	26570					-0.055337013511916666